sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-2W-A8YY-01 10 100010932 100010932 A G LOXL4 Missense_Mutation p.V697A 0.39 deleterious(0.01) benign(0.384) TCGA-2W-A8YY-01 10 100013428 100013428 C T LOXL4 Missense_Mutation p.D573N 0.37 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 10 100150651 100150651 C T PYROXD2 Intron 0.48 TCGA-2W-A8YY-01 10 100152744 100152744 G A PYROXD2 Silent p.I294I 0.35 TCGA-2W-A8YY-01 10 100155207 100155207 G A PYROXD2 Missense_Mutation p.R210C 0.34 tolerated(0.18) benign(0.014) TCGA-2W-A8YY-01 10 100167384 100167384 C T PYROXD2 Silent p.L90L 0.11 TCGA-2W-A8YY-01 10 100190932 100190932 A G HPS1 Silent p.H208H 0.29 TCGA-2W-A8YY-01 10 100195159 100195159 G T HPS1 Missense_Mutation p.L90M 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 100195489 100195489 G A HPS1 Missense_Mutation p.P53L 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 100202908 100202908 G A HPS1 Silent p.F30F 0.35 TCGA-2W-A8YY-01 10 100219429 100219429 G A HPSE2 Missense_Mutation p.R561C 0.38 deleterious(0) possibly_damaging(0.891) TCGA-2W-A8YY-01 10 101152923 101152923 C T CNNM1 3'UTR 0.64 TCGA-2W-A8YY-01 10 101163230 101163230 C T GOT1 Missense_Mutation p.E319K 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-2W-A8YY-01 10 101165923 101165923 C T GOT1 Missense_Mutation p.D170N 0.19 tolerated(0.17) benign(0.054) TCGA-2W-A8YY-01 10 101421270 101421270 C T ENTPD7 Missense_Mutation p.R26C 0.43 tolerated(0.11) benign(0.037) TCGA-2W-A8YY-01 10 101515387 101515387 C T CUTC Missense_Mutation p.S238L 0.36 tolerated(0.19) benign(0.003) TCGA-2W-A8YY-01 10 101567195 101567195 C T ABCC2 Missense_Mutation p.R529W 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 101590081 101590081 G T ABCC2 Nonsense_Mutation p.E880* 0.28 TCGA-2W-A8YY-01 10 101645587 101645587 C T DNMBP Missense_Mutation p.A1219T 0.12 tolerated(0.07) possibly_damaging(0.656) TCGA-2W-A8YY-01 10 101654743 101654743 G T DNMBP Missense_Mutation p.S1039Y 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 10 101814184 101814184 C T CPN1 Missense_Mutation p.G344E 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 101841375 101841375 T C CPN1 Missense_Mutation p.D3G 0.32 tolerated(0.24) probably_damaging(0.977) TCGA-2W-A8YY-01 10 101978521 101978521 C T CHUK Missense_Mutation p.E251K 0.23 tolerated(0.08) possibly_damaging(0.63) TCGA-2W-A8YY-01 10 102005615 102005615 C T CWF19L1 Missense_Mutation p.R302H 0.38 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 10 102055998 102055998 G A PKD2L1 Missense_Mutation p.R413W 0.39 deleterious(0.01) probably_damaging(0.932) TCGA-2W-A8YY-01 10 102107215 102107215 C T SCD 5'UTR 0.58 TCGA-2W-A8YY-01 10 102112173 102112173 C T SCD Missense_Mutation p.R121C 0.29 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 10 102116423 102116423 C A SCD Missense_Mutation p.T261N 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 10 102120886 102120886 C T SCD 3'UTR 0.53 TCGA-2W-A8YY-01 10 102300483 102300483 A G HIF1AN Missense_Mutation p.Q174R 0.33 tolerated(0.09) probably_damaging(0.931) TCGA-2W-A8YY-01 10 102588752 102588752 C A PAX2 3'UTR 0.40 TCGA-2W-A8YY-01 10 102676719 102676719 A G FAM178A Missense_Mutation p.T193A 0.61 tolerated(0.48) benign(0.002) TCGA-2W-A8YY-01 10 102684170 102684170 C T FAM178A Missense_Mutation p.T471I 0.39 tolerated(0.51) benign(0.006) TCGA-2W-A8YY-01 10 102684394 102684394 C T FAM178A Missense_Mutation p.R546C 0.52 tolerated(0.2) benign(0.002) TCGA-2W-A8YY-01 10 102722731 102722731 G A FAM178A 3'Flank 0.52 TCGA-2W-A8YY-01 10 102724261 102724261 G A FAM178A 3'Flank 0.34 TCGA-2W-A8YY-01 10 102738278 102738278 C T SEMA4G Intron 0.46 TCGA-2W-A8YY-01 10 102738952 102738952 C T SEMA4G Missense_Mutation p.R303C 0.50 deleterious(0) probably_damaging(0.949) TCGA-2W-A8YY-01 10 102738988 102738988 C T SEMA4G Missense_Mutation p.R315C 0.26 deleterious(0.03) possibly_damaging(0.493) TCGA-2W-A8YY-01 10 102739066 102739066 A G MRPL43 3'Flank 0.41 TCGA-2W-A8YY-01 10 102739897 102739897 C T SEMA4G Missense_Mutation p.R383C 0.12 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 102740364 102740364 C A SEMA4G Missense_Mutation p.L461M 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 10 102747012 102747012 A G MRPL43 Intron 0.44 TCGA-2W-A8YY-01 10 102748342 102748342 C A C10orf2 Missense_Mutation p.F125L 0.40 tolerated(0.93) benign(0.012) TCGA-2W-A8YY-01 10 102748373 102748373 G A C10orf2 Missense_Mutation p.A136T 0.11 tolerated(0.62) benign(0.002) TCGA-2W-A8YY-01 10 102749001 102749001 C G C10orf2 Missense_Mutation p.A345G 0.42 deleterious(0.05) probably_damaging(0.98) TCGA-2W-A8YY-01 10 102763798 102763798 C T LZTS2 Missense_Mutation p.P315S 0.44 tolerated(0.3) probably_damaging(0.957) TCGA-2W-A8YY-01 10 102778671 102778671 G A PDZD7 Missense_Mutation p.A411V 0.44 tolerated_low_confidence(0.18) benign(0.002) TCGA-2W-A8YY-01 10 102778807 102778807 C T PDZD7 Missense_Mutation p.A366T 0.29 tolerated(0.42) benign(0.021) TCGA-2W-A8YY-01 10 102778910 102778910 G A PDZD7 Silent p.C331C 0.47 TCGA-2W-A8YY-01 10 102778948 102778948 A G PDZD7 Missense_Mutation p.S319P 0.29 deleterious(0.01) benign(0.013) TCGA-2W-A8YY-01 10 102849209 102849209 G T TLX1NB 3'UTR 0.39 TCGA-2W-A8YY-01 10 102987247 102987247 G A LBX1 Missense_Mutation p.A209V 0.22 tolerated(0.14) benign(0.011) TCGA-2W-A8YY-01 10 103343123 103343123 G A POLL Intron 0.32 TCGA-2W-A8YY-01 10 103534553 103534553 C T FGF8 Silent p.G91G 0.50 TCGA-2W-A8YY-01 10 103609538 103609538 C A C10orf76 Nonsense_Mutation p.E658* 0.33 TCGA-2W-A8YY-01 10 103766327 103766327 G A C10orf76 Missense_Mutation p.P340S 0.45 tolerated(0.35) benign(0.006) TCGA-2W-A8YY-01 10 103869748 103869748 C T LDB1 Missense_Mutation p.R193Q 0.30 deleterious(0) probably_damaging(0.957) TCGA-2W-A8YY-01 10 104121625 104121625 T A GBF1 Missense_Mutation p.Y547N 0.26 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 10 104136073 104136073 G A GBF1 Missense_Mutation p.V1310M 0.39 tolerated(0.16) benign(0.012) TCGA-2W-A8YY-01 10 104156053 104156053 C A NFKB2 Missense_Mutation p.S22Y 0.53 tolerated(0.05) benign(0.089) TCGA-2W-A8YY-01 10 104176265 104176265 C T PSD Silent p.P177P 0.58 TCGA-2W-A8YY-01 10 104180590 104180590 T A FBXL15 5'UTR 0.47 TCGA-2W-A8YY-01 10 1042113 1042113 C T GTPBP4 Missense_Mutation p.R131C 0.10 deleterious(0) possibly_damaging(0.836) TCGA-2W-A8YY-01 10 1042177 1042177 A G GTPBP4 Missense_Mutation p.E152G 0.44 deleterious(0) possibly_damaging(0.57) TCGA-2W-A8YY-01 10 104417123 104417123 C T TRIM8 3'UTR 0.40 TCGA-2W-A8YY-01 10 104572834 104572834 C T WBP1L Missense_Mutation p.R280W 0.30 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 10 105063520 105063520 G A PCGF6 3'UTR 0.12 TCGA-2W-A8YY-01 10 105127860 105127860 C T TAF5 Silent p.G38G 0.29 TCGA-2W-A8YY-01 10 105147783 105147783 C T TAF5 Nonsense_Mutation p.R736* 0.41 TCGA-2W-A8YY-01 10 105181227 105181227 G A PDCD11 Silent p.S800S 0.33 TCGA-2W-A8YY-01 10 105201969 105201969 G T PDCD11 Splice_Site p.X1570_splice 0.38 TCGA-2W-A8YY-01 10 105205517 105205518 - T PDCD11 3'UTR 0.25 TCGA-2W-A8YY-01 10 105209167 105209167 G A CALHM2 Missense_Mutation p.R178C 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 10 105218360 105218360 G A CALHM1 Missense_Mutation p.A50V 0.29 tolerated(0.5) benign(0.001) TCGA-2W-A8YY-01 10 105238576 105238576 G A CALHM3 Missense_Mutation p.R72W 0.50 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 1052963 1052963 C T GTPBP4 Silent p.C336C 0.50 TCGA-2W-A8YY-01 10 105363194 105363194 G A SH3PXD2A Missense_Mutation p.P566L 0.45 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-2W-A8YY-01 10 105664854 105664854 A G OBFC1 Missense_Mutation p.V97A 0.33 tolerated(0.77) benign(0) TCGA-2W-A8YY-01 10 105832979 105832979 C T COL17A1 Missense_Mutation p.S135N 0.40 unknown(0) TCGA-2W-A8YY-01 10 105881844 105881844 G A SFR1 5'Flank 0.36 TCGA-2W-A8YY-01 10 105938840 105938840 A G WDR96 Missense_Mutation p.F803L 0.39 deleterious(0) possibly_damaging(0.853) TCGA-2W-A8YY-01 10 106019501 106019501 C A GSTO1 Missense_Mutation p.P104Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 106075563 106075563 G A ITPRIP Missense_Mutation p.R83C 0.23 tolerated(0.09) possibly_damaging(0.517) TCGA-2W-A8YY-01 10 106401667 106401667 G A SORCS3 Silent p.S194S 0.21 TCGA-2W-A8YY-01 10 106960993 106960993 C T SORCS3 Missense_Mutation p.A748V 0.41 tolerated(0.18) benign(0.065) TCGA-2W-A8YY-01 10 107024578 107024578 T C SORCS3 3'UTR 0.39 TCGA-2W-A8YY-01 10 108338987 108338987 A - SORCS1 Frame_Shift_Del p.Y1132Mfs*12 0.31 TCGA-2W-A8YY-01 10 108339193 108339193 G A SORCS1 Missense_Mutation p.A1102V 0.27 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 10 108357161 108357161 G A SORCS1 Silent p.F1071F 0.21 TCGA-2W-A8YY-01 10 108412196 108412196 C T SORCS1 Missense_Mutation p.G807R 0.47 deleterious(0.02) probably_damaging(0.962) TCGA-2W-A8YY-01 10 108432710 108432710 C T SORCS1 Nonsense_Mutation p.W658* 0.48 TCGA-2W-A8YY-01 10 108447976 108447976 T - SORCS1 Frame_Shift_Del p.R512Gfs*18 0.26 TCGA-2W-A8YY-01 10 108459113 108459113 G A SORCS1 Silent p.F424F 0.29 TCGA-2W-A8YY-01 10 108923952 108923952 G A SORCS1 Silent p.S111S 0.28 TCGA-2W-A8YY-01 10 1089867 1089867 G A IDI1 Intron 0.35 TCGA-2W-A8YY-01 10 111637549 111637549 C T XPNPEP1 Missense_Mutation p.A440T 0.34 tolerated(0.54) benign(0.001) TCGA-2W-A8YY-01 10 111967763 111967763 T C MXI1 Missense_Mutation p.I66T 0.45 deleterious(0) benign(0.368) TCGA-2W-A8YY-01 10 112063318 112063318 C T SMNDC1 Missense_Mutation p.A10T 0.39 tolerated(0.56) benign(0.018) TCGA-2W-A8YY-01 10 11207157 11207157 T C CELF2 Intron 0.31 TCGA-2W-A8YY-01 10 11207450 11207450 A G CELF2 Missense_Mutation p.N26D 0.09 tolerated(0.08) benign(0.005) TCGA-2W-A8YY-01 10 112266815 112266815 G A DUSP5 Silent p.E217E 0.35 TCGA-2W-A8YY-01 10 112760194 112760194 G A SHOC2 Missense_Mutation p.R288H 0.31 deleterious(0.03) possibly_damaging(0.812) TCGA-2W-A8YY-01 10 112769557 112769557 G T SHOC2 Missense_Mutation p.E503D 0.42 deleterious(0.05) benign(0.008) TCGA-2W-A8YY-01 10 114901004 114901004 C T TCF7L2 Missense_Mutation p.T205M 0.29 tolerated(0.12) probably_damaging(0.999) TCGA-2W-A8YY-01 10 11504810 11504810 C A USP6NL Missense_Mutation p.G723V 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.586) TCGA-2W-A8YY-01 10 11505660 11505660 C T USP6NL Missense_Mutation p.G440R 0.42 deleterious(0.05) benign(0.208) TCGA-2W-A8YY-01 10 11527070 11527070 C T USP6NL Splice_Site p.X293_splice 0.26 TCGA-2W-A8YY-01 10 115392934 115392934 G A NRAP Missense_Mutation p.A514V 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 115609744 115609744 C T DCLRE1A Missense_Mutation p.G374R 0.53 deleterious(0.02) benign(0.003) TCGA-2W-A8YY-01 10 115609848 115609848 T C DCLRE1A Missense_Mutation p.D339G 0.40 tolerated(0.06) benign(0.002) TCGA-2W-A8YY-01 10 115614574 115614574 C A NHLRC2 5'UTR 0.29 TCGA-2W-A8YY-01 10 115636669 115636669 G T NHLRC2 Missense_Mutation p.A241S 0.62 tolerated(0.66) possibly_damaging(0.598) TCGA-2W-A8YY-01 10 115804702 115804702 C T ADRB1 Missense_Mutation p.R271W 0.23 deleterious(0.01) possibly_damaging(0.711) TCGA-2W-A8YY-01 10 115805879 115805879 G A ADRB1 3'UTR 0.10 TCGA-2W-A8YY-01 10 115882763 115882763 T C C10orf118 3'UTR 0.54 TCGA-2W-A8YY-01 10 115882821 115882821 A - C10orf118 3'UTR 0.25 TCGA-2W-A8YY-01 10 115910910 115910910 C T C10orf118 Missense_Mutation p.V277I 0.42 tolerated(0.32) benign(0.002) TCGA-2W-A8YY-01 10 115947747 115947747 T G TDRD1 Missense_Mutation p.F53V 0.36 tolerated(0.1) possibly_damaging(0.765) TCGA-2W-A8YY-01 10 115959068 115959068 G A TDRD1 Missense_Mutation p.G174D 0.29 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 10 115970508 115970508 G A TDRD1 Splice_Site p.X518_splice 0.41 TCGA-2W-A8YY-01 10 116037796 116037796 C T VWA2 Silent p.S230S 0.18 TCGA-2W-A8YY-01 10 116062142 116062142 G A AFAP1L2 Silent p.A462A 0.41 TCGA-2W-A8YY-01 10 116620591 116620591 G A FAM160B1 Silent p.L677L 0.35 TCGA-2W-A8YY-01 10 116623368 116623368 G A FAM160B1 3'UTR 0.14 TCGA-2W-A8YY-01 10 116624079 116624079 G A FAM160B1 3'UTR 0.42 TCGA-2W-A8YY-01 10 116735954 116735954 C T TRUB1 3'UTR 0.60 TCGA-2W-A8YY-01 10 116889196 116889196 C A ATRNL1 Missense_Mutation p.A243D 0.50 tolerated(0.11) probably_damaging(0.937) TCGA-2W-A8YY-01 10 117823935 117823935 G T GFRA1 Missense_Mutation p.L458I 0.36 tolerated(0.3) unknown(0) TCGA-2W-A8YY-01 10 118318665 118318665 G A PNLIP Splice_Site p.X311_splice 0.38 TCGA-2W-A8YY-01 10 118394447 118394447 G A PNLIPRP2 Missense_Mutation p.A305T 0.35 tolerated(0.35) benign(0.009) TCGA-2W-A8YY-01 10 118423363 118423363 G A C10orf82 3'UTR 0.29 TCGA-2W-A8YY-01 10 118451928 118451928 C T HSPA12A Nonsense_Mutation p.W199* 0.49 TCGA-2W-A8YY-01 10 118451955 118451955 C T HSPA12A Silent p.S190S 0.27 TCGA-2W-A8YY-01 10 118644681 118644681 C T KIAA1598 3'UTR 0.59 TCGA-2W-A8YY-01 10 118674895 118674895 C T KIAA1598 Silent p.P432P 0.38 TCGA-2W-A8YY-01 10 119029945 119029945 C T SLC18A2 Nonsense_Mutation p.R471* 0.40 TCGA-2W-A8YY-01 10 119049749 119049749 C T PDZD8 Silent p.S403S 0.48 TCGA-2W-A8YY-01 10 11997318 11997318 G A UPF2 Silent p.L921L 0.34 TCGA-2W-A8YY-01 10 11997436 11997436 C T UPF2 Missense_Mutation p.R882Q 0.52 deleterious(0.04) benign(0.079) TCGA-2W-A8YY-01 10 120095078 120095078 G A FAM204A Missense_Mutation p.R104C 0.25 deleterious(0.05) benign(0.048) TCGA-2W-A8YY-01 10 120443644 120443644 C T CACUL1 3'UTR 0.21 TCGA-2W-A8YY-01 10 120445285 120445286 - A CACUL1 3'UTR 0.50 TCGA-2W-A8YY-01 10 120450781 120450781 T C CACUL1 Missense_Mutation p.T341A 0.39 tolerated(1) benign(0) TCGA-2W-A8YY-01 10 120513993 120513993 G A CACUL1 Silent p.C94C 0.43 TCGA-2W-A8YY-01 10 1205711 1205711 G A LINC00200 RNA 0.13 TCGA-2W-A8YY-01 10 1205852 1205852 G A LINC00200 RNA 0.36 TCGA-2W-A8YY-01 10 120790438 120790438 G C NANOS1 3'UTR 0.18 TCGA-2W-A8YY-01 10 120792479 120792479 C T NANOS1 3'UTR 0.33 TCGA-2W-A8YY-01 10 120795766 120795766 G A EIF3A Missense_Mutation p.R1312C 0.32 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 10 120802166 120802166 G A EIF3A Missense_Mutation p.R956W 0.29 deleterious(0.04) probably_damaging(0.992) TCGA-2W-A8YY-01 10 120816312 120816312 G A EIF3A Silent p.S712S 0.35 TCGA-2W-A8YY-01 10 120877051 120877051 G A FAM45A Missense_Mutation p.S118N 0.37 tolerated(0.47) benign(0.007) TCGA-2W-A8YY-01 10 120900675 120900675 T C SFXN4 3'UTR 0.30 TCGA-2W-A8YY-01 10 12126559 12126559 G A DHTKD1 Missense_Mutation p.E111K 0.40 tolerated(0.48) benign(0.004) TCGA-2W-A8YY-01 10 121336174 121336174 G A TIAL1 Missense_Mutation p.P334L 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 121340208 121340208 G T TIAL1 Intron 0.29 TCGA-2W-A8YY-01 10 121429548 121429548 C T BAG3 Silent p.F122F 0.10 TCGA-2W-A8YY-01 10 121429559 121429559 C T BAG3 Missense_Mutation p.A126V 0.45 deleterious(0.04) possibly_damaging(0.84) TCGA-2W-A8YY-01 10 12143154 12143154 G T DHTKD1 Missense_Mutation p.D624Y 0.10 deleterious(0.03) benign(0.014) TCGA-2W-A8YY-01 10 121431896 121431896 G A BAG3 Missense_Mutation p.E213K 0.34 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 10 121436157 121436157 T C BAG3 Missense_Mutation p.V364A 0.47 tolerated(0.15) unknown(0) TCGA-2W-A8YY-01 10 12148287 12148287 G A DHTKD1 Missense_Mutation p.E647K 0.36 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 10 121565994 121565994 T C INPP5F Splice_Site p.X480_splice 0.31 TCGA-2W-A8YY-01 10 121588608 121588608 C T INPP5F 3'UTR 0.37 TCGA-2W-A8YY-01 10 121691718 121691718 G A SEC23IP Nonsense_Mutation p.W882* 0.47 TCGA-2W-A8YY-01 10 122334761 122334761 C T PPAPDC1A Silent p.C188C 0.24 TCGA-2W-A8YY-01 10 122624689 122624689 A G WDR11 Missense_Mutation p.I282V 0.46 tolerated(0.27) benign(0.005) TCGA-2W-A8YY-01 10 122646267 122646267 A G WDR11 Silent p.V680V 0.26 TCGA-2W-A8YY-01 10 123988987 123988987 G A TACC2 Missense_Mutation p.A2675T 0.28 probably_damaging(1) TCGA-2W-A8YY-01 10 124094412 124094412 C T BTBD16 Missense_Mutation p.S394L 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 124345801 124345801 G A DMBT1 Missense_Mutation p.R562H 0.39 tolerated(0.14) unknown(0) TCGA-2W-A8YY-01 10 124376764 124376764 G T DMBT1 Missense_Mutation p.A1498S 0.35 tolerated(0.75) benign(0.186) TCGA-2W-A8YY-01 10 124402727 124402727 G A DMBT1 Missense_Mutation p.R2352H 0.29 tolerated(0.08) probably_damaging(0.995) TCGA-2W-A8YY-01 10 124648075 124648075 C T RP11-564D11.3 RNA 0.31 TCGA-2W-A8YY-01 10 124739964 124739964 G A PSTK 5'UTR 0.53 TCGA-2W-A8YY-01 10 124742271 124742271 G A PSTK Missense_Mutation p.R80Q 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 10 124749851 124749851 G T PSTK 3'UTR 0.08 TCGA-2W-A8YY-01 10 124752839 124752839 G A IKZF5 3'UTR 0.40 TCGA-2W-A8YY-01 10 124753424 124753424 G T IKZF5 Missense_Mutation p.L378I 0.33 deleterious(0.04) probably_damaging(0.952) TCGA-2W-A8YY-01 10 124753905 124753905 G A IKZF5 Silent p.H217H 0.27 TCGA-2W-A8YY-01 10 124921890 124921890 G A BUB3 Missense_Mutation p.A239T 0.32 tolerated(0.05) benign(0.381) TCGA-2W-A8YY-01 10 125447531 125447531 A C GPR26 Missense_Mutation p.D290A 0.44 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 10 125506488 125506488 A C CPXM2 Missense_Mutation p.V688G 0.29 tolerated(0.29) benign(0.122) TCGA-2W-A8YY-01 10 125804291 125804291 C T CHST15 Missense_Mutation p.A231T 0.25 tolerated(0.72) benign(0.001) TCGA-2W-A8YY-01 10 126086586 126086586 C T OAT Silent p.A415A 0.40 TCGA-2W-A8YY-01 10 126089457 126089457 C T OAT Missense_Mutation p.V371I 0.51 tolerated(0.11) possibly_damaging(0.475) TCGA-2W-A8YY-01 10 126138349 126138349 G A NKX1-2 Missense_Mutation p.A55V 0.08 tolerated(0.11) possibly_damaging(0.75) TCGA-2W-A8YY-01 10 126186675 126186675 C T LHPP Missense_Mutation p.A201V 0.43 tolerated(0.07) benign(0.005) TCGA-2W-A8YY-01 10 126205781 126205781 C T LHPP Silent p.D219D 0.37 TCGA-2W-A8YY-01 10 126308869 126308869 G A FAM53B 3'UTR 0.32 TCGA-2W-A8YY-01 10 126631682 126631682 G A ZRANB1 Missense_Mutation p.C207Y 0.29 tolerated(0.06) benign(0.272) TCGA-2W-A8YY-01 10 126676881 126676881 G A CTBP2 3'Flank 0.47 TCGA-2W-A8YY-01 10 126683237 126683237 G A CTBP2 Missense_Mutation p.A734V 0.33 deleterious(0.02) benign(0.179) TCGA-2W-A8YY-01 10 126686645 126686645 C T CTBP2 Nonsense_Mutation p.W691* 0.41 TCGA-2W-A8YY-01 10 126715349 126715349 G A CTBP2 Missense_Mutation p.A327V 0.50 tolerated_low_confidence(0.25) benign(0.026) TCGA-2W-A8YY-01 10 127350461 127350461 C T TEX36 Missense_Mutation p.R46Q 0.31 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 10 127429178 127429178 G A EDRF1 Missense_Mutation p.G710R 0.47 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 10 127486648 127486648 G A UROS Missense_Mutation p.A154V 0.48 tolerated(1) benign(0.005) TCGA-2W-A8YY-01 10 127491344 127491344 G A UROS Intron 0.38 TCGA-2W-A8YY-01 10 127548281 127548281 T C DHX32 Missense_Mutation p.Y247C 0.10 deleterious(0) possibly_damaging(0.806) TCGA-2W-A8YY-01 10 127677708 127677708 G A FANK1 Intron 0.62 TCGA-2W-A8YY-01 10 127789742 127789742 G A ADAM12 Silent p.C273C 0.29 TCGA-2W-A8YY-01 10 128114629 128114630 - T C10orf90 Frame_Shift_Ins p.K665Efs*14 0.19 TCGA-2W-A8YY-01 10 128153498 128153498 G A C10orf90 Missense_Mutation p.T434I 0.29 deleterious(0.03) benign(0.375) TCGA-2W-A8YY-01 10 1284337 1284337 G A ADARB2 Silent p.V406V 0.48 TCGA-2W-A8YY-01 10 128934290 128934290 G A FAM196A 3'UTR 0.48 TCGA-2W-A8YY-01 10 128935168 128935168 G A FAM196A 3'UTR 0.36 TCGA-2W-A8YY-01 10 128936194 128936194 C T FAM196A Silent p.S449S 0.22 TCGA-2W-A8YY-01 10 129207382 129207382 G A DOCK1 Missense_Mutation p.A1381T 0.12 deleterious(0) possibly_damaging(0.658) TCGA-2W-A8YY-01 10 129209144 129209144 C T DOCK1 Missense_Mutation p.R1441W 0.53 deleterious(0.01) probably_damaging(0.975) TCGA-2W-A8YY-01 10 129839226 129839226 C T PTPRE Silent p.A27A 0.55 TCGA-2W-A8YY-01 10 129899708 129899708 G A MKI67 Silent p.S3173S 0.21 TCGA-2W-A8YY-01 10 129901089 129901089 G A MKI67 Silent p.S3005S 0.38 TCGA-2W-A8YY-01 10 129901575 129901575 C T MKI67 Silent p.R2843R 0.30 TCGA-2W-A8YY-01 10 129904627 129904627 G T MKI67 Missense_Mutation p.A1826D 0.21 deleterious(0.02) probably_damaging(0.951) TCGA-2W-A8YY-01 10 129906770 129906770 G A MKI67 Missense_Mutation p.P1112S 0.33 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 10 129909983 129909983 A G MKI67 Missense_Mutation p.V729A 0.35 tolerated(0.69) benign(0.012) TCGA-2W-A8YY-01 10 129913994 129913994 A G MKI67 Silent p.C226C 0.39 TCGA-2W-A8YY-01 10 129921152 129921152 A G MKI67 Missense_Mutation p.S94P 0.41 deleterious(0.01) possibly_damaging(0.897) TCGA-2W-A8YY-01 10 131634655 131634655 A - EBF3 3'UTR 0.38 TCGA-2W-A8YY-01 10 13169877 13169877 G A OPTN Missense_Mutation p.E459K 0.33 deleterious(0) possibly_damaging(0.455) TCGA-2W-A8YY-01 10 131943545 131943545 G T GLRX3 Nonsense_Mutation p.E55* 0.31 TCGA-2W-A8YY-01 10 13213101 13213101 G A MCM10 Missense_Mutation p.E63K 0.36 tolerated(0.06) benign(0.341) TCGA-2W-A8YY-01 10 13213187 13213187 C T MCM10 Silent p.P91P 0.32 TCGA-2W-A8YY-01 10 132902575 132902575 C T TCERG1L Missense_Mutation p.V480M 0.08 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 132944831 132944831 C T TCERG1L Missense_Mutation p.R376H 0.29 deleterious(0.01) possibly_damaging(0.699) TCGA-2W-A8YY-01 10 13337519 13337519 A G PHYH Silent p.P74P 0.33 TCGA-2W-A8YY-01 10 13378248 13378248 C T SEPHS1 Missense_Mutation p.D134N 0.36 deleterious(0.02) benign(0.035) TCGA-2W-A8YY-01 10 133930703 133930703 G A JAKMIP3 Silent p.E86E 0.67 TCGA-2W-A8YY-01 10 133948547 133948547 A C JAKMIP3 Missense_Mutation p.E284D 0.27 tolerated(0.47) benign(0.014) TCGA-2W-A8YY-01 10 133954068 133954068 C T JAKMIP3 Silent p.D486D 0.35 TCGA-2W-A8YY-01 10 134014424 134014424 G A DPYSL4 Silent p.A349A 0.12 TCGA-2W-A8YY-01 10 134041526 134041526 A G STK32C Missense_Mutation p.L142P 0.33 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 10 134218249 134218249 C T PWWP2B Missense_Mutation p.S82F 0.50 tolerated(0.09) benign(0.002) TCGA-2W-A8YY-01 10 134219765 134219765 G A PWWP2B Silent p.Q587Q 0.15 TCGA-2W-A8YY-01 10 134591367 134591367 C T INPP5A Intron 0.47 TCGA-2W-A8YY-01 10 134598446 134598446 C T NKX6-2 Missense_Mutation p.G270S 0.47 tolerated_low_confidence(0.83) benign(0) TCGA-2W-A8YY-01 10 134622241 134622241 G A TTC40 Missense_Mutation p.A2611V 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.682) TCGA-2W-A8YY-01 10 134712495 134712495 C T TTC40 Missense_Mutation p.G1063S 0.35 tolerated(1) benign(0.005) TCGA-2W-A8YY-01 10 134731997 134731997 G A TTC40 Missense_Mutation p.S629L 0.29 tolerated(0.14) benign(0.014) TCGA-2W-A8YY-01 10 134732013 134732013 G A TTC40 Nonsense_Mutation p.R624* 0.34 TCGA-2W-A8YY-01 10 134896172 134896172 C A GPR123-AS1 3'Flank 0.42 TCGA-2W-A8YY-01 10 134981792 134981792 C T KNDC1 Silent p.F112F 0.45 TCGA-2W-A8YY-01 10 135012744 135012744 A G KNDC1 Missense_Mutation p.D911G 0.34 deleterious(0) benign(0.271) TCGA-2W-A8YY-01 10 135026386 135026386 G A KNDC1 Missense_Mutation p.S1468N 0.44 deleterious(0.01) probably_damaging(0.965) TCGA-2W-A8YY-01 10 135082264 135082264 C T ADAM8 Missense_Mutation p.R684H 0.36 tolerated(0.2) benign(0.03) TCGA-2W-A8YY-01 10 135084467 135084467 G A ADAM8 Silent p.N494N 0.27 TCGA-2W-A8YY-01 10 135086473 135086473 C A ADAM8 Silent p.V208V 0.38 TCGA-2W-A8YY-01 10 135095769 135095769 G A TUBGCP2 Silent p.P817P 0.12 TCGA-2W-A8YY-01 10 135106677 135106677 C T TUBGCP2 Missense_Mutation p.R325H 0.39 tolerated(0.06) possibly_damaging(0.479) TCGA-2W-A8YY-01 10 135137858 135137858 C T CALY 3'Flank 0.17 TCGA-2W-A8YY-01 10 135202512 135202512 G A PAOX Missense_Mutation p.E392K 0.33 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 10 135269785 135269785 G A SPRN Intron 0.47 TCGA-2W-A8YY-01 10 135271165 135271165 G A SPRN Intron 0.47 TCGA-2W-A8YY-01 10 135272543 135272543 G A SPRN Intron 0.28 TCGA-2W-A8YY-01 10 135272564 135272564 G A SPRN Intron 0.37 TCGA-2W-A8YY-01 10 135278506 135278506 G A SPRN Intron 0.27 TCGA-2W-A8YY-01 10 135350692 135350692 C T CYP2E1 Missense_Mutation p.P365S 0.35 deleterious(0.03) possibly_damaging(0.905) TCGA-2W-A8YY-01 10 13685932 13685932 T - FRMD4A 3'UTR 0.19 TCGA-2W-A8YY-01 10 13688370 13688370 C T FRMD4A 3'UTR 0.41 TCGA-2W-A8YY-01 10 13698821 13698821 G A FRMD4A Missense_Mutation p.A923V 0.45 tolerated(0.19) benign(0.004) TCGA-2W-A8YY-01 10 13698910 13698910 C A FRMD4A Silent p.T893T 0.34 TCGA-2W-A8YY-01 10 13708147 13708147 C T FRMD4A Missense_Mutation p.R518H 0.28 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 10 14885878 14885878 G A HSPA14 Intron 0.40 TCGA-2W-A8YY-01 10 14939446 14939446 G A SUV39H2 Missense_Mutation p.G260E 0.36 deleterious(0) possibly_damaging(0.712) TCGA-2W-A8YY-01 10 14950350 14950350 C A DCLRE1C 3'UTR 0.32 TCGA-2W-A8YY-01 10 14995940 14995940 G T DCLRE1C Missense_Mutation p.L24M 0.37 deleterious(0.02) probably_damaging(0.988) TCGA-2W-A8YY-01 10 15115347 15115347 C T OLAH 3'UTR 0.31 TCGA-2W-A8YY-01 10 15154813 15154813 C T NMT2 Silent p.A440A 0.27 TCGA-2W-A8YY-01 10 15154922 15154922 G A NMT2 Missense_Mutation p.T404M 0.33 deleterious(0.01) probably_damaging(0.953) TCGA-2W-A8YY-01 10 15255433 15255433 A G FAM171A1 Silent p.A718A 0.41 TCGA-2W-A8YY-01 10 15258106 15258106 G T FAM171A1 Missense_Mutation p.P292H 0.50 tolerated(0.54) possibly_damaging(0.868) TCGA-2W-A8YY-01 10 15600151 15600151 G A ITGA8 Silent p.N896N 0.33 TCGA-2W-A8YY-01 10 15648306 15648306 C A ITGA8 Missense_Mutation p.R627I 0.36 tolerated(0.08) benign(0.281) TCGA-2W-A8YY-01 10 15761590 15761590 C T ITGA8 Missense_Mutation p.V61M 0.32 deleterious(0) possibly_damaging(0.716) TCGA-2W-A8YY-01 10 16526649 16526649 C A PTER Missense_Mutation p.A89D 0.39 tolerated(0.35) possibly_damaging(0.507) TCGA-2W-A8YY-01 10 16555007 16555008 - A PTER 3'UTR 0.29 TCGA-2W-A8YY-01 10 16563524 16563524 C T C1QL3 5'UTR 0.38 TCGA-2W-A8YY-01 10 16955919 16955919 C T CUBN Missense_Mutation p.G2475D 0.36 tolerated(0.22) benign(0) TCGA-2W-A8YY-01 10 16967283 16967283 A G CUBN Silent p.N2201N 0.07 TCGA-2W-A8YY-01 10 17061870 17061870 C T CUBN Missense_Mutation p.R1377H 0.33 tolerated(0.31) benign(0) TCGA-2W-A8YY-01 10 17061966 17061966 C T CUBN Missense_Mutation p.R1345Q 0.36 tolerated(0.68) benign(0.001) TCGA-2W-A8YY-01 10 17085902 17085902 A G CUBN Silent p.S1251S 0.27 TCGA-2W-A8YY-01 10 17127691 17127691 G A CUBN Missense_Mutation p.P672L 0.37 deleterious(0.02) benign(0.327) TCGA-2W-A8YY-01 10 17127725 17127725 G A CUBN Missense_Mutation p.L661F 0.30 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 10 17195536 17195536 C T TRDMT1 Missense_Mutation p.A349T 0.47 deleterious(0) probably_damaging(0.923) TCGA-2W-A8YY-01 10 17450197 17450197 G A ST8SIA6 Intron 0.23 TCGA-2W-A8YY-01 10 1779263 1779263 G A ADARB2 Missense_Mutation p.R28W 0.35 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-2W-A8YY-01 10 18332046 18332047 - A SLC39A12 3'UTR 0.29 TCGA-2W-A8YY-01 10 18829056 18829056 G T CACNB2 3'UTR 0.41 TCGA-2W-A8YY-01 10 18829101 18829101 C T CACNB2 3'UTR 0.28 TCGA-2W-A8YY-01 10 18830223 18830223 A C CACNB2 3'Flank 0.09 TCGA-2W-A8YY-01 10 18834968 18834968 T C NSUN6 Missense_Mutation p.D435G 0.36 deleterious(0.04) benign(0.15) TCGA-2W-A8YY-01 10 18965925 18965925 C T ARL5B 3'UTR 0.25 TCGA-2W-A8YY-01 10 20105742 20105742 C T PLXDC2 5'UTR 0.28 TCGA-2W-A8YY-01 10 20500651 20500651 C A PLXDC2 Missense_Mutation p.P372H 0.48 tolerated(0.06) probably_damaging(0.983) TCGA-2W-A8YY-01 10 21070020 21070020 G A NEBL 3'UTR 0.24 TCGA-2W-A8YY-01 10 21074101 21074101 A G NEBL 3'UTR 0.41 TCGA-2W-A8YY-01 10 21134283 21134283 C T NEBL Silent p.E377E 0.40 TCGA-2W-A8YY-01 10 21415027 21415027 C T C10orf113 Missense_Mutation p.E65K 0.33 tolerated_low_confidence(1) benign(0.101) TCGA-2W-A8YY-01 10 21808013 21808013 C T SKIDA1 5'UTR 0.44 TCGA-2W-A8YY-01 10 21940692 21940692 G T MLLT10 Nonsense_Mutation p.E264* 0.40 TCGA-2W-A8YY-01 10 22002713 22002713 G A MLLT10 Missense_Mutation p.S571N 0.32 deleterious(0.03) benign(0.003) TCGA-2W-A8YY-01 10 22048372 22048372 C A DNAJC1 Silent p.R441R 0.27 TCGA-2W-A8YY-01 10 22048455 22048455 G A DNAJC1 Nonsense_Mutation p.R414* 0.43 TCGA-2W-A8YY-01 10 22607622 22607622 C T COMMD3 Missense_Mutation p.R131C 0.45 deleterious(0.05) benign(0.027) TCGA-2W-A8YY-01 10 22700092 22700092 G A SPAG6 Missense_Mutation p.E483K 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 10 22862249 22862249 G A PIP4K2A Silent p.Y210Y 0.28 TCGA-2W-A8YY-01 10 22862335 22862335 A G PIP4K2A Missense_Mutation p.Y182H 0.26 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 10 22880556 22880556 A G PIP4K2A Splice_Site p.X164_splice 0.09 TCGA-2W-A8YY-01 10 22880590 22880590 C T PIP4K2A Missense_Mutation p.E154K 0.48 tolerated(0.1) possibly_damaging(0.523) TCGA-2W-A8YY-01 10 23270320 23270320 C T ARMC3 Missense_Mutation p.A323V 0.30 tolerated(0.14) benign(0.014) TCGA-2W-A8YY-01 10 23730339 23730339 T C OTUD1 3'UTR 0.39 TCGA-2W-A8YY-01 10 24836366 24836366 G A KIAA1217 3'UTR 0.60 TCGA-2W-A8YY-01 10 24873560 24873560 G A ARHGAP21 Silent p.T1886T 0.31 TCGA-2W-A8YY-01 10 24959258 24959258 G A ARHGAP21 Silent p.S44S 0.23 TCGA-2W-A8YY-01 10 25273811 25273811 C A ENKUR Missense_Mutation p.E206D 0.33 tolerated(0.11) benign(0.049) TCGA-2W-A8YY-01 10 25284621 25284621 T C ENKUR Missense_Mutation p.H134R 0.38 deleterious(0.02) benign(0.096) TCGA-2W-A8YY-01 10 25313489 25313489 G T THNSL1 Missense_Mutation p.R446I 0.29 deleterious(0.04) benign(0.098) TCGA-2W-A8YY-01 10 25314255 25314255 A T THNSL1 Missense_Mutation p.L701F 0.49 tolerated(0.24) probably_damaging(0.999) TCGA-2W-A8YY-01 10 25464308 25464308 T G GPR158 5'UTR 0.45 TCGA-2W-A8YY-01 10 26286161 26286161 A G MYO3A Missense_Mutation p.E161G 0.36 deleterious(0.01) benign(0.072) TCGA-2W-A8YY-01 10 26463006 26463006 G A MYO3A Silent p.V1271V 0.23 TCGA-2W-A8YY-01 10 26508094 26508094 T C GAD2 Missense_Mutation p.Y137H 0.27 tolerated(1) probably_damaging(0.99) TCGA-2W-A8YY-01 10 26800766 26800766 T C APBB1IP Missense_Mutation p.F208L 0.08 tolerated(0.2) benign(0.418) TCGA-2W-A8YY-01 10 27012762 27012762 T C PDSS1 Missense_Mutation p.S213P 0.09 deleterious(0.01) probably_damaging(0.974) TCGA-2W-A8YY-01 10 27350077 27350077 G A ANKRD26 Silent p.H486H 0.25 TCGA-2W-A8YY-01 10 27400778 27400778 A G YME1L1 3'UTR 0.39 TCGA-2W-A8YY-01 10 27420832 27420832 C A YME1L1 Missense_Mutation p.D329Y 0.08 tolerated(0.06) probably_damaging(0.984) TCGA-2W-A8YY-01 10 27425221 27425221 G A YME1L1 Missense_Mutation p.A232V 0.29 tolerated(0.57) benign(0.069) TCGA-2W-A8YY-01 10 27458907 27458907 G A MASTL Missense_Mutation p.S340N 0.45 tolerated(0.14) benign(0.033) TCGA-2W-A8YY-01 10 27506906 27506906 T C ACBD5 Intron 0.19 TCGA-2W-A8YY-01 10 27687493 27687493 G A PTCHD3 Silent p.N678N 0.37 TCGA-2W-A8YY-01 10 27692213 27692213 C T PTCHD3 Missense_Mutation p.G429S 0.19 tolerated(0.76) benign(0.067) TCGA-2W-A8YY-01 10 27702286 27702286 G A PTCHD3 Silent p.T298T 0.11 TCGA-2W-A8YY-01 10 27827180 27827180 T - RAB18 3'UTR 0.31 TCGA-2W-A8YY-01 10 27962705 27962705 G A MKX 3'UTR 0.19 TCGA-2W-A8YY-01 10 28023390 28023390 C T MKX Missense_Mutation p.R278H 0.38 tolerated(0.3) probably_damaging(0.998) TCGA-2W-A8YY-01 10 28030398 28030398 C T MKX Missense_Mutation p.R75Q 0.34 deleterious(0.01) benign(0.173) TCGA-2W-A8YY-01 10 28273124 28273124 T G ARMC4 Missense_Mutation p.E224A 0.48 deleterious(0.02) benign(0.04) TCGA-2W-A8YY-01 10 28409179 28409179 G A MPP7 Silent p.H277H 0.43 TCGA-2W-A8YY-01 10 28971068 28971068 G T BAMBI Missense_Mutation p.R174M 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 29811393 29811393 G A SVIL Missense_Mutation p.P1112L 0.32 deleterious(0.02) benign(0.002) TCGA-2W-A8YY-01 10 29822347 29822347 G A SVIL Nonsense_Mutation p.R317* 0.38 TCGA-2W-A8YY-01 10 29839623 29839623 G A SVIL Missense_Mutation p.R244W 0.41 tolerated(0.11) possibly_damaging(0.556) TCGA-2W-A8YY-01 10 299974 299974 A G ZMYND11 3'UTR 0.36 TCGA-2W-A8YY-01 10 300120 300120 C T ZMYND11 3'UTR 0.19 TCGA-2W-A8YY-01 10 30317522 30317522 G A KIAA1462 Missense_Mutation p.R519C 0.43 tolerated(0.05) possibly_damaging(0.729) TCGA-2W-A8YY-01 10 30625906 30625906 C A MTPAP Missense_Mutation p.E202D 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-2W-A8YY-01 10 30986437 30986437 C T SVILP1 RNA 0.47 TCGA-2W-A8YY-01 10 31133939 31133939 G A ZNF438 Missense_Mutation p.T813M 0.42 tolerated(0.13) possibly_damaging(0.799) TCGA-2W-A8YY-01 10 3147341 3147341 C T PFKP Nonsense_Mutation p.R219* 0.41 TCGA-2W-A8YY-01 10 3150968 3150968 G A PFKP Missense_Mutation p.A316T 0.48 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 10 3155672 3155672 G A PFKP Missense_Mutation p.A445T 0.38 tolerated(0.08) possibly_damaging(0.529) TCGA-2W-A8YY-01 10 3180452 3180452 C T PITRM1 Missense_Mutation p.D1000N 0.30 tolerated(0.15) possibly_damaging(0.533) TCGA-2W-A8YY-01 10 3187856 3187856 C T PITRM1 Missense_Mutation p.E798K 0.17 tolerated(0.09) possibly_damaging(0.647) TCGA-2W-A8YY-01 10 3187893 3187893 C T PITRM1 Silent p.A785A 0.24 TCGA-2W-A8YY-01 10 3207489 3207489 C T PITRM1 Missense_Mutation p.D191N 0.33 tolerated(0.09) benign(0.081) TCGA-2W-A8YY-01 10 32095351 32095351 T C ARHGAP12 3'UTR 0.38 TCGA-2W-A8YY-01 10 32150475 32150475 G A ARHGAP12 Nonsense_Mutation p.Q266* 0.44 TCGA-2W-A8YY-01 10 32308784 32308784 A G KIF5B Splice_Site p.X769_splice 0.40 TCGA-2W-A8YY-01 10 32310050 32310050 C T KIF5B Missense_Mutation p.E702K 0.14 deleterious(0.04) probably_damaging(0.985) TCGA-2W-A8YY-01 10 32582573 32582573 G A EPC1 Missense_Mutation p.P136S 0.32 tolerated(0.06) benign(0.007) TCGA-2W-A8YY-01 10 32760133 32760133 G A CCDC7 Missense_Mutation p.V218M 0.51 tolerated(0.24) benign(0.001) TCGA-2W-A8YY-01 10 32872182 32872182 G A C10ORF68 5'UTR 0.42 TCGA-2W-A8YY-01 10 329381 329381 C T DIP2C Nonsense_Mutation p.W1375* 0.32 TCGA-2W-A8YY-01 10 32983830 32983830 A C C10ORF68 Missense_Mutation p.N97H 0.44 deleterious(0.01) probably_damaging(0.983) TCGA-2W-A8YY-01 10 33067946 33067946 A C C10ORF68 Intron 0.33 TCGA-2W-A8YY-01 10 33134820 33134820 C A C10ORF68 Missense_Mutation p.F422L 0.38 tolerated(0.79) benign(0.002) TCGA-2W-A8YY-01 10 33467101 33467101 C T NRP1 3'UTR 0.28 TCGA-2W-A8YY-01 10 33469254 33469254 T G NRP1 Missense_Mutation p.K841T 0.08 tolerated(0.62) benign(0.002) TCGA-2W-A8YY-01 10 33491867 33491867 C T NRP1 Missense_Mutation p.D606N 0.36 tolerated(0.16) possibly_damaging(0.595) TCGA-2W-A8YY-01 10 33495124 33495124 C T NRP1 Intron 0.35 TCGA-2W-A8YY-01 10 33545303 33545303 G A NRP1 Missense_Mutation p.A252V 0.27 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 33545355 33545355 G A NRP1 Nonsense_Mutation p.R235* 0.37 TCGA-2W-A8YY-01 10 33559652 33559652 G A NRP1 Silent p.Y127Y 0.31 TCGA-2W-A8YY-01 10 34408605 34408605 G A PARD3 Missense_Mutation p.R1205W 0.26 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-2W-A8YY-01 10 34601218 34601219 - A PARD3 Intron 0.39 TCGA-2W-A8YY-01 10 34606224 34606224 G T PARD3 Missense_Mutation p.S962Y 0.35 deleterious(0) probably_damaging(0.961) TCGA-2W-A8YY-01 10 34663822 34663822 C A PARD3 Missense_Mutation p.A550S 0.47 tolerated(0.65) benign(0.003) TCGA-2W-A8YY-01 10 35300856 35300856 G A CUL2 Missense_Mutation p.R695W 0.41 deleterious(0) possibly_damaging(0.799) TCGA-2W-A8YY-01 10 35327865 35327865 C T CUL2 Missense_Mutation p.R306Q 0.32 tolerated(0.39) benign(0.002) TCGA-2W-A8YY-01 10 35351960 35351960 A G CUL2 Silent p.P69P 0.41 TCGA-2W-A8YY-01 10 35415962 35415962 C T CREM 5'Flank 0.46 TCGA-2W-A8YY-01 10 35501611 35501611 T C CREM 3'UTR 0.43 TCGA-2W-A8YY-01 10 35805523 35805523 C T CCNY Nonsense_Mutation p.Q113* 0.12 TCGA-2W-A8YY-01 10 35842023 35842023 C T CCNY Missense_Mutation p.A219V 0.39 deleterious(0.01) benign(0.025) TCGA-2W-A8YY-01 10 37442533 37442533 T C ANKRD30A Missense_Mutation p.C525R 0.10 deleterious(0.04) possibly_damaging(0.831) TCGA-2W-A8YY-01 10 37442546 37442546 C T ANKRD30A Missense_Mutation p.A529V 0.08 tolerated(0.08) possibly_damaging(0.739) TCGA-2W-A8YY-01 10 37442570 37442570 A C ANKRD30A Missense_Mutation p.K537T 0.08 tolerated(0.71) benign(0.001) TCGA-2W-A8YY-01 10 37478428 37478428 T C ANKRD30A Missense_Mutation p.C763R 0.26 tolerated(0.27) probably_damaging(0.962) TCGA-2W-A8YY-01 10 37478441 37478441 C T ANKRD30A Missense_Mutation p.A767V 0.28 tolerated(0.09) benign(0.118) TCGA-2W-A8YY-01 10 37482173 37482173 A G ANKRD30A Silent p.Q811Q 0.06 TCGA-2W-A8YY-01 10 38120748 38120748 C A ZNF248 Missense_Mutation p.R512I 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 38121593 38121593 A - ZNF248 Frame_Shift_Del p.F230Lfs*8 0.29 TCGA-2W-A8YY-01 10 3824115 3824115 C T KLF6 Missense_Mutation p.E132K 0.38 tolerated(0.22) benign(0.114) TCGA-2W-A8YY-01 10 38246454 38246454 A T ZNF25 Missense_Mutation p.D12E 0.41 deleterious(0.02) possibly_damaging(0.901) TCGA-2W-A8YY-01 10 38344111 38344111 A G ZNF33A Silent p.G353G 0.23 TCGA-2W-A8YY-01 10 38406334 38406334 T C ZNF37A Silent p.S85S 0.11 TCGA-2W-A8YY-01 10 410321 410321 G A DIP2C Missense_Mutation p.R824W 0.36 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 10 412221 412221 G T DIP2C Silent p.T754T 0.42 TCGA-2W-A8YY-01 10 42833255 42833255 C A RP11-313J2.1 RNA 0.30 TCGA-2W-A8YY-01 10 42833432 42833432 C T RP11-313J2.1 RNA 0.07 TCGA-2W-A8YY-01 10 430538 430538 C T DIP2C Silent p.S568S 0.38 TCGA-2W-A8YY-01 10 43089568 43089568 A C ZNF33B Missense_Mutation p.F277C 0.52 tolerated(0.44) possibly_damaging(0.713) TCGA-2W-A8YY-01 10 43292067 43292067 G A BMS1 Missense_Mutation p.G459S 0.40 tolerated(0.36) benign(0.003) TCGA-2W-A8YY-01 10 43316049 43316049 C T BMS1 Missense_Mutation p.P955S 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-2W-A8YY-01 10 43318580 43318580 T A BMS1 Silent p.S1049S 0.09 TCGA-2W-A8YY-01 10 43610125 43610125 C T RET Missense_Mutation p.R693C 0.32 deleterious(0.01) probably_damaging(0.986) TCGA-2W-A8YY-01 10 43624012 43624012 G T RET 3'UTR 0.47 TCGA-2W-A8YY-01 10 43659455 43659455 C T CSGALNACT2 Silent p.A374A 0.29 TCGA-2W-A8YY-01 10 43678751 43678751 C T CSGALNACT2 Nonsense_Mutation p.R464* 0.45 TCGA-2W-A8YY-01 10 43692548 43692548 C T RASGEF1A Splice_Site p.X409_splice 0.23 TCGA-2W-A8YY-01 10 43869205 43869205 T C FXYD4 Missense_Mutation p.V4A 0.35 tolerated(0.13) benign(0.153) TCGA-2W-A8YY-01 10 43882901 43882901 A G HNRNPF Silent p.P144P 0.25 TCGA-2W-A8YY-01 10 44873239 44873239 C T CXCL12 Nonsense_Mutation p.W127* 0.42 TCGA-2W-A8YY-01 10 45479395 45479395 C T RASSF4 Intron 0.38 TCGA-2W-A8YY-01 10 45480374 45480374 C T RASSF4 Missense_Mutation p.R163W 0.28 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 10 454880 454880 G A DIP2C Missense_Mutation p.R379W 0.34 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 10 45498983 45498983 A C ZNF22 Missense_Mutation p.K56T 0.41 tolerated(0.06) probably_damaging(0.998) TCGA-2W-A8YY-01 10 45499337 45499337 A C ZNF22 Missense_Mutation p.K174T 0.38 deleterious(0) possibly_damaging(0.819) TCGA-2W-A8YY-01 10 45602526 45602526 G A RSU1P2 RNA 0.16 TCGA-2W-A8YY-01 10 45877942 45877942 C T ALOX5 Silent p.Y54Y 0.24 TCGA-2W-A8YY-01 10 45891384 45891384 G A ALOX5 Missense_Mutation p.R144Q 0.41 deleterious(0.03) benign(0.407) TCGA-2W-A8YY-01 10 45938587 45938587 G A ALOX5 Silent p.R458R 0.43 TCGA-2W-A8YY-01 10 45952878 45952878 A - MARCH8 3'UTR 0.50 TCGA-2W-A8YY-01 10 45958757 45958757 G A MARCH8 Intron 0.34 TCGA-2W-A8YY-01 10 45958947 45958947 G A MARCH8 Intron 0.54 TCGA-2W-A8YY-01 10 459873 459873 G A DIP2C Missense_Mutation p.P346L 0.41 tolerated(0.36) benign(0.1) TCGA-2W-A8YY-01 10 459960 459960 G A DIP2C Missense_Mutation p.P317L 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 10 46028665 46028665 C T MARCH8 5'UTR 0.32 TCGA-2W-A8YY-01 10 46122159 46122159 A - ZFAND4 Frame_Shift_Del p.L371* 0.31 TCGA-2W-A8YY-01 10 46246274 46246274 G A FAM21C Missense_Mutation p.E307K 0.30 tolerated(0.06) benign(0.087) TCGA-2W-A8YY-01 10 46280071 46280071 T C FAM21C Missense_Mutation p.L846P 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 46322466 46322466 C T AGAP4 Missense_Mutation p.G297S 0.65 tolerated(0.28) possibly_damaging(0.848) TCGA-2W-A8YY-01 10 46587353 46587353 C T PTPN20A Silent p.Q161Q 0.37 TCGA-2W-A8YY-01 10 46587376 46587376 T - PTPN20A Frame_Shift_Del p.T154Qfs*13 0.20 TCGA-2W-A8YY-01 10 46914620 46914620 T C RP11-38L15.8 RNA 0.50 TCGA-2W-A8YY-01 10 46959810 46959810 G T SYT15 3'Flank 0.22 TCGA-2W-A8YY-01 10 46967494 46967494 G A SYT15 Missense_Mutation p.R195C 0.15 tolerated(0.06) benign(0.052) TCGA-2W-A8YY-01 10 46969292 46969292 G A SYT15 Missense_Mutation p.R57W 0.20 tolerated(0.06) benign(0) TCGA-2W-A8YY-01 10 46969383 46969383 G T SYT15 Nonsense_Mutation p.C26* 0.19 TCGA-2W-A8YY-01 10 46969415 46969416 - C SYT15 Frame_Shift_Ins p.L16Afs*24 0.12 TCGA-2W-A8YY-01 10 47769209 47769209 G A AL603965.1 Silent p.P10P 0.16 TCGA-2W-A8YY-01 10 48370474 48370474 T C ZNF488 5'UTR 0.58 TCGA-2W-A8YY-01 10 48373559 48373559 C T ZNF488 3'UTR 0.25 TCGA-2W-A8YY-01 10 48389283 48389283 C T RBP3 Missense_Mutation p.S532N 0.38 deleterious(0.04) benign(0.002) TCGA-2W-A8YY-01 10 48389643 48389643 G T RBP3 Missense_Mutation p.A412D 0.40 tolerated(0.46) possibly_damaging(0.791) TCGA-2W-A8YY-01 10 48438438 48438438 C T GDF10 Silent p.A91A 0.35 TCGA-2W-A8YY-01 10 49203519 49203519 G T FAM25C Silent p.A54A 0.07 TCGA-2W-A8YY-01 10 49365230 49365230 C T FRMPD2 3'UTR 0.37 TCGA-2W-A8YY-01 10 49376666 49376666 G A FRMPD2 Missense_Mutation p.A1170V 0.13 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 10 49937499 49937499 G A WDFY4 Missense_Mutation p.E332K 0.38 deleterious(0.03) benign(0.028) TCGA-2W-A8YY-01 10 49942064 49942064 C A WDFY4 Silent p.G557G 0.49 TCGA-2W-A8YY-01 10 49985025 49985025 T C WDFY4 Missense_Mutation p.Y1032H 0.09 deleterious(0.02) benign(0.078) TCGA-2W-A8YY-01 10 50030470 50030470 C A WDFY4 Missense_Mutation p.S1957Y 0.47 tolerated(0.07) possibly_damaging(0.713) TCGA-2W-A8YY-01 10 5009393 5009393 C T AKR1C1 Intron 0.17 TCGA-2W-A8YY-01 10 50121915 50121915 T C LRRC18 Missense_Mutation p.T96A 0.39 tolerated(0.78) benign(0.014) TCGA-2W-A8YY-01 10 50165186 50165186 G A WDFY4 Missense_Mutation p.D2664N 0.28 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 50375043 50375043 C T C10orf128 Missense_Mutation p.A37T 0.44 deleterious(0.01) probably_damaging(0.99) TCGA-2W-A8YY-01 10 50594536 50594536 C T DRGX Missense_Mutation p.A177T 0.35 tolerated(0.08) benign(0.05) TCGA-2W-A8YY-01 10 50599275 50599275 C A DRGX Missense_Mutation p.D28Y 0.35 deleterious(0) benign(0.101) TCGA-2W-A8YY-01 10 50678363 50678363 C T ERCC6 Missense_Mutation p.A1215T 0.41 tolerated(0.06) possibly_damaging(0.578) TCGA-2W-A8YY-01 10 50678699 50678699 T C ERCC6 Missense_Mutation p.S1103G 0.28 tolerated(0.24) benign(0.005) TCGA-2W-A8YY-01 10 50686426 50686426 G T ERCC6 Missense_Mutation p.L754I 0.08 tolerated(0.2) possibly_damaging(0.573) TCGA-2W-A8YY-01 10 50725153 50725153 C T ERCC6-PGBD3 Missense_Mutation p.R471Q 0.33 tolerated_low_confidence(0.35) unknown(0) TCGA-2W-A8YY-01 10 50732662 50732662 C T ERCC6-PGBD3 Missense_Mutation p.E272K 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 10 50738877 50738877 C T ERCC6-PGBD3 Silent p.T144T 0.28 TCGA-2W-A8YY-01 10 50819414 50819414 C T SLC18A3 Missense_Mutation p.R210C 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 50819472 50819472 C A SLC18A3 Missense_Mutation p.P229Q 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 50819911 50819911 C T SLC18A3 Silent p.P375P 0.25 TCGA-2W-A8YY-01 10 50820647 50820647 C T SLC18A3 3'UTR 0.34 TCGA-2W-A8YY-01 10 50822252 50822252 C T CHAT Missense_Mutation p.A6V 0.43 unknown(0) TCGA-2W-A8YY-01 10 50958937 50958937 C T OGDHL Missense_Mutation p.D282N 0.39 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 10 51582851 51582851 A C NCOA4 Missense_Mutation p.K225T 0.45 deleterious(0.01) probably_damaging(0.948) TCGA-2W-A8YY-01 10 51585466 51585466 A G NCOA4 Missense_Mutation p.K538R 0.21 tolerated(0.09) benign(0.223) TCGA-2W-A8YY-01 10 51623316 51623316 G A TIMM23 5'UTR 0.22 TCGA-2W-A8YY-01 10 51769931 51769931 C T AGAP6 Silent p.P682P 0.37 TCGA-2W-A8YY-01 10 51838435 51838435 C T FAM21A Missense_Mutation p.R98C 0.69 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 52066407 52066407 G A SGMS1 3'UTR 0.48 TCGA-2W-A8YY-01 10 52391057 52391057 C T RP11-50E11.3 RNA 0.26 TCGA-2W-A8YY-01 10 52566634 52566634 G T A1CF Missense_Mutation p.A547D 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.877) TCGA-2W-A8YY-01 10 52619625 52619625 G A A1CF 5'UTR 0.22 TCGA-2W-A8YY-01 10 52751178 52751178 C T PRKG1 Missense_Mutation p.L14F 0.39 tolerated(0.16) possibly_damaging(0.587) TCGA-2W-A8YY-01 10 53457535 53457535 G A CSTF2T Missense_Mutation p.A592V 0.08 deleterious(0.04) unknown(0) TCGA-2W-A8YY-01 10 53459047 53459047 C T CSTF2T Missense_Mutation p.R88Q 0.40 deleterious(0.02) probably_damaging(0.945) TCGA-2W-A8YY-01 10 54054059 54054059 T G PRKG1 3'UTR 0.27 TCGA-2W-A8YY-01 10 5494837 5494837 C - NET1 Frame_Shift_Del p.R184Efs*6 0.24 TCGA-2W-A8YY-01 10 5498735 5498735 G - NET1 Frame_Shift_Del p.N525Tfs*23 0.27 TCGA-2W-A8YY-01 10 55591228 55591228 C T PCDH15 Missense_Mutation p.R1350H 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 10 5568041 5568041 C T CALML3 3'UTR 0.39 TCGA-2W-A8YY-01 10 55955536 55955536 G A PCDH15 Silent p.I404I 0.26 TCGA-2W-A8YY-01 10 56367711 56367711 A G PCDH15 Intron 0.43 TCGA-2W-A8YY-01 10 5682071 5682071 G A ASB13 3'UTR 0.36 TCGA-2W-A8YY-01 10 5768869 5768869 G A FAM208B Missense_Mutation p.D125N 0.16 deleterious(0.03) benign(0.376) TCGA-2W-A8YY-01 10 5782149 5782149 G T FAM208B Missense_Mutation p.E672D 0.47 deleterious(0.01) benign(0.247) TCGA-2W-A8YY-01 10 5920105 5920105 G A ANKRD16 Silent p.S358S 0.54 TCGA-2W-A8YY-01 10 5979090 5979090 C T FBXO18 Silent p.N1044N 0.31 TCGA-2W-A8YY-01 10 6002335 6002335 G A IL15RA Missense_Mutation p.P193L 0.38 tolerated(0.09) possibly_damaging(0.878) TCGA-2W-A8YY-01 10 60148462 60148462 G A TFAM Silent p.Q108Q 0.47 TCGA-2W-A8YY-01 10 60154825 60154825 G T TFAM Missense_Mutation p.E244D 0.13 tolerated_low_confidence(0.11) benign(0.003) TCGA-2W-A8YY-01 10 60588589 60588589 G T BICC1 Missense_Mutation p.A955S 0.36 deleterious(0.01) benign(0.278) TCGA-2W-A8YY-01 10 61014160 61014160 C T FAM13C Missense_Mutation p.R427Q 0.39 deleterious(0.01) possibly_damaging(0.511) TCGA-2W-A8YY-01 10 61112180 61112180 G A FAM13C Silent p.H58H 0.40 TCGA-2W-A8YY-01 10 61592332 61592332 A G CCDC6 Missense_Mutation p.I178T 0.21 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 10 61719612 61719612 C T C10orf40 5'UTR 0.31 TCGA-2W-A8YY-01 10 61823960 61823960 T C ANK3 Missense_Mutation p.M4136V 0.35 probably_damaging(0.952) TCGA-2W-A8YY-01 10 61830419 61830419 G A ANK3 Missense_Mutation p.T3407M 0.48 probably_damaging(0.991) TCGA-2W-A8YY-01 10 61848030 61848030 G A ANK3 Missense_Mutation p.R1139W 0.49 probably_damaging(1) TCGA-2W-A8YY-01 10 62038554 62038554 G A ANK3 Missense_Mutation p.A131V 0.43 probably_damaging(0.999) TCGA-2W-A8YY-01 10 6262798 6262798 C T PFKFB3 Silent p.G267G 0.50 TCGA-2W-A8YY-01 10 62652633 62652633 C T RHOBTB1 Silent p.G139G 0.22 TCGA-2W-A8YY-01 10 6273234 6273234 T G PFKFB3 Intron 0.48 TCGA-2W-A8YY-01 10 6277249 6277249 G T PFKFB3 3'UTR 0.48 TCGA-2W-A8YY-01 10 63173301 63173301 A G TMEM26 Intron 0.33 TCGA-2W-A8YY-01 10 63810750 63810750 C T ARID5B Silent p.A279A 0.42 TCGA-2W-A8YY-01 10 63850741 63850741 C T ARID5B Missense_Mutation p.P507S 0.41 tolerated(0.68) benign(0.038) TCGA-2W-A8YY-01 10 63851224 63851224 G A ARID5B Missense_Mutation p.E668K 0.35 tolerated(0.53) probably_damaging(0.955) TCGA-2W-A8YY-01 10 63851570 63851570 C T ARID5B Missense_Mutation p.P783L 0.46 deleterious(0.02) benign(0.039) TCGA-2W-A8YY-01 10 63957572 63957572 A G RTKN2 3'UTR 0.15 TCGA-2W-A8YY-01 10 64136322 64136322 T C ZNF365 Missense_Mutation p.S124P 0.38 tolerated_low_confidence(0.14) benign(0.103) TCGA-2W-A8YY-01 10 64566025 64566025 C T ADO 3'UTR 0.38 TCGA-2W-A8YY-01 10 64572077 64572077 A G EGR2 3'UTR 0.15 TCGA-2W-A8YY-01 10 64572582 64572582 G A EGR2 3'UTR 0.41 TCGA-2W-A8YY-01 10 64573219 64573219 G A EGR2 Silent p.T393T 0.23 TCGA-2W-A8YY-01 10 64573268 64573268 C T EGR2 Missense_Mutation p.R377H 0.38 deleterious(0) probably_damaging(0.954) TCGA-2W-A8YY-01 10 64573743 64573743 G A EGR2 Missense_Mutation p.L219F 0.40 deleterious(0.02) benign(0.124) TCGA-2W-A8YY-01 10 64927020 64927020 C G JMJD1C 3'UTR 0.28 TCGA-2W-A8YY-01 10 64945390 64945390 C A JMJD1C Nonsense_Mutation p.E2255* 0.31 TCGA-2W-A8YY-01 10 64946091 64946091 G A JMJD1C Missense_Mutation p.A2208V 0.39 deleterious(0.05) benign(0.331) TCGA-2W-A8YY-01 10 64967506 64967506 C T JMJD1C Missense_Mutation p.R1308H 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 64974582 64974582 G A JMJD1C Missense_Mutation p.R449W 0.35 tolerated_low_confidence(0.19) benign(0) TCGA-2W-A8YY-01 10 64974905 64974905 G T JMJD1C Missense_Mutation p.P341H 0.37 deleterious(0.02) possibly_damaging(0.642) TCGA-2W-A8YY-01 10 64975086 64975086 C A JMJD1C Missense_Mutation p.D318Y 0.32 deleterious(0) probably_damaging(0.946) TCGA-2W-A8YY-01 10 6525560 6525560 G A PRKCQ Missense_Mutation p.P341S 0.34 tolerated(0.58) benign(0.01) TCGA-2W-A8YY-01 10 6539185 6539185 G A PRKCQ Nonsense_Mutation p.R191* 0.44 TCGA-2W-A8YY-01 10 6549443 6549443 G A PRKCQ Nonsense_Mutation p.Q112* 0.36 TCGA-2W-A8YY-01 10 6557009 6557009 G A PRKCQ Missense_Mutation p.A30V 0.40 deleterious(0.03) possibly_damaging(0.801) TCGA-2W-A8YY-01 10 68040302 68040302 T C CTNNA3 Missense_Mutation p.N604D 0.35 tolerated(0.14) unknown(0) TCGA-2W-A8YY-01 10 68687204 68687204 T C LRRTM3 Missense_Mutation p.F177S 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 68858237 68858237 G A LRRTM3 3'UTR 0.36 TCGA-2W-A8YY-01 10 68940115 68940115 C T CTNNA3 Missense_Mutation p.R336H 0.33 deleterious(0.02) possibly_damaging(0.812) TCGA-2W-A8YY-01 10 68979501 68979501 G A CTNNA3 Missense_Mutation p.A236V 0.30 tolerated(0.17) possibly_damaging(0.787) TCGA-2W-A8YY-01 10 69647195 69647195 G A SIRT1 Missense_Mutation p.E151K 0.10 deleterious_low_confidence(0.02) benign(0.298) TCGA-2W-A8YY-01 10 69918265 69918265 C A MYPN Missense_Mutation p.S447Y 0.38 deleterious(0.03) probably_damaging(0.984) TCGA-2W-A8YY-01 10 69934181 69934181 C T MYPN Missense_Mutation p.L778F 0.22 tolerated(0.94) benign(0) TCGA-2W-A8YY-01 10 70105572 70105572 A T RUFY2 Missense_Mutation p.S627T 0.38 tolerated(0.84) benign(0.002) TCGA-2W-A8YY-01 10 70123399 70123399 T - RUFY2 Frame_Shift_Del p.I535Yfs*26 0.21 TCGA-2W-A8YY-01 10 70154127 70154127 G A RUFY2 Silent p.I195I 0.33 TCGA-2W-A8YY-01 10 70229802 70229802 G A DNA2 Missense_Mutation p.R151C 0.34 tolerated(0.18) possibly_damaging(0.764) TCGA-2W-A8YY-01 10 70266342 70266342 C T SLC25A16 Silent p.T119T 0.24 TCGA-2W-A8YY-01 10 70287014 70287014 A C SLC25A16 Missense_Mutation p.F40C 0.36 deleterious(0.01) probably_damaging(0.956) TCGA-2W-A8YY-01 10 70405426 70405426 A G TET1 Silent p.S980S 0.38 TCGA-2W-A8YY-01 10 70451415 70451415 C T TET1 Silent p.D2085D 0.42 TCGA-2W-A8YY-01 10 70451541 70451541 C T TET1 Silent p.H2127H 0.37 TCGA-2W-A8YY-01 10 70525661 70525661 G A CCAR1 Missense_Mutation p.R708H 0.48 deleterious(0.01) possibly_damaging(0.749) TCGA-2W-A8YY-01 10 70661054 70661054 C T DDX50 5'UTR 0.29 TCGA-2W-A8YY-01 10 70721864 70721864 C T DDX21 Silent p.G186G 0.37 TCGA-2W-A8YY-01 10 70863730 70863730 G T SRGN Missense_Mutation p.G111C 0.46 deleterious(0.01) possibly_damaging(0.905) TCGA-2W-A8YY-01 10 71020998 71020998 C T HKDC1 Missense_Mutation p.R774C 0.09 tolerated(0.16) benign(0.014) TCGA-2W-A8YY-01 10 71139711 71139711 C T HK1 Silent p.C379C 0.08 TCGA-2W-A8YY-01 10 71142379 71142379 C T HK1 Missense_Mutation p.R472W 0.38 deleterious(0.01) probably_damaging(0.941) TCGA-2W-A8YY-01 10 71175818 71175818 C T TACR2 Missense_Mutation p.A88T 0.08 tolerated(0.4) benign(0.001) TCGA-2W-A8YY-01 10 71175871 71175871 T C TACR2 Missense_Mutation p.Y70C 0.53 deleterious(0.01) probably_damaging(0.916) TCGA-2W-A8YY-01 10 71266623 71266623 G A TSPAN15 Silent p.R258R 0.37 TCGA-2W-A8YY-01 10 71684742 71684742 A G COL13A1 Silent p.E425E 0.52 TCGA-2W-A8YY-01 10 71873908 71873908 G A AIFM2 3'UTR 0.55 TCGA-2W-A8YY-01 10 71873968 71873968 G A AIFM2 Missense_Mutation p.T363M 0.28 tolerated(0.06) benign(0.047) TCGA-2W-A8YY-01 10 71883277 71883277 C T AIFM2 Splice_Site p.X60_splice 0.33 TCGA-2W-A8YY-01 10 71902533 71902533 C T TYSND1 Silent p.S458S 0.32 TCGA-2W-A8YY-01 10 71974313 71974313 T C PPA1 Silent p.K109K 0.36 TCGA-2W-A8YY-01 10 71977664 71977664 G A PPA1 Silent p.N67N 0.09 TCGA-2W-A8YY-01 10 72014725 72014725 G A NPFFR1 Silent p.A427A 0.34 TCGA-2W-A8YY-01 10 72015326 72015326 G A NPFFR1 Missense_Mutation p.A227V 0.31 tolerated(0.15) benign(0.125) TCGA-2W-A8YY-01 10 7205220 7205220 G A SFMBT2 3'UTR 0.40 TCGA-2W-A8YY-01 10 72083709 72083709 G T LRRC20 Missense_Mutation p.L104M 0.36 deleterious(0) possibly_damaging(0.887) TCGA-2W-A8YY-01 10 72285765 72285765 G A PALD1 Missense_Mutation p.G20S 0.32 tolerated(0.43) benign(0.187) TCGA-2W-A8YY-01 10 72298677 72298677 G A PALD1 Silent p.A494A 0.43 TCGA-2W-A8YY-01 10 72326345 72326345 G A PALD1 Silent p.S809S 0.39 TCGA-2W-A8YY-01 10 72326419 72326419 C T PALD1 Missense_Mutation p.S834F 0.47 deleterious(0.01) probably_damaging(0.966) TCGA-2W-A8YY-01 10 72327172 72327172 G A PALD1 3'UTR 0.43 TCGA-2W-A8YY-01 10 72511315 72511315 G A ADAMTS14 Missense_Mutation p.G840R 0.45 deleterious(0.03) probably_damaging(0.989) TCGA-2W-A8YY-01 10 72517795 72517795 C T ADAMTS14 Silent p.C1008C 0.35 TCGA-2W-A8YY-01 10 72604388 72604388 G T SGPL1 Missense_Mutation p.Q62H 0.47 tolerated(0.07) benign(0.099) TCGA-2W-A8YY-01 10 72614489 72614489 A G SGPL1 Missense_Mutation p.K96E 0.33 tolerated(0.96) benign(0.104) TCGA-2W-A8YY-01 10 72633252 72633252 G A SGPL1 Missense_Mutation p.A402T 0.39 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 10 73046569 73046569 G A UNC5B Missense_Mutation p.V226M 0.33 tolerated(0.17) possibly_damaging(0.737) TCGA-2W-A8YY-01 10 73047433 73047433 G A UNC5B Missense_Mutation p.R271Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 10 73048747 73048747 C T UNC5B Silent p.L367L 0.34 TCGA-2W-A8YY-01 10 73050782 73050782 C T UNC5B Missense_Mutation p.R404C 0.42 deleterious(0.01) possibly_damaging(0.893) TCGA-2W-A8YY-01 10 73082518 73082518 G A SLC29A3 Missense_Mutation p.V3I 0.33 tolerated_low_confidence(1) benign(0) TCGA-2W-A8YY-01 10 73115851 73115851 C T SLC29A3 Silent p.G208G 0.12 TCGA-2W-A8YY-01 10 73122312 73122312 T G SLC29A3 Missense_Mutation p.L459V 0.53 tolerated(0.19) benign(0.075) TCGA-2W-A8YY-01 10 7327880 7327880 A T SFMBT2 Missense_Mutation p.L158H 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 10 73442209 73442209 C T CDH23 Silent p.S214S 0.49 TCGA-2W-A8YY-01 10 73475878 73475878 C T C10orf105 Missense_Mutation p.E73K 0.34 deleterious(0.02) benign(0.127) TCGA-2W-A8YY-01 10 73501476 73501476 T C CDH23 Missense_Mutation p.V1553A 0.33 tolerated(0.27) probably_damaging(0.916) TCGA-2W-A8YY-01 10 73565665 73565665 C A CDH23 Silent p.R419R 0.40 TCGA-2W-A8YY-01 10 73574897 73574897 C T CDH23 Silent p.G1069G 0.36 TCGA-2W-A8YY-01 10 73767011 73767011 C T CHST3 Silent p.N74N 0.42 TCGA-2W-A8YY-01 10 73822593 73822593 C T SPOCK2 Silent p.T400T 0.37 TCGA-2W-A8YY-01 10 73846676 73846676 G A SPOCK2 Intron 0.44 TCGA-2W-A8YY-01 10 73887888 73887888 T - ASCC1 Frame_Shift_Del p.K331Nfs*16 0.32 TCGA-2W-A8YY-01 10 74093645 74093645 G A DNAJB12 3'UTR 0.50 TCGA-2W-A8YY-01 10 74451919 74451919 G A MCU Missense_Mutation p.A4T 0.24 tolerated_low_confidence(0.61) unknown(0) TCGA-2W-A8YY-01 10 74690334 74690334 G A OIT3 Missense_Mutation p.R469Q 0.38 tolerated(0.16) possibly_damaging(0.612) TCGA-2W-A8YY-01 10 74884784 74884784 C T NUDT13 Intron 0.41 TCGA-2W-A8YY-01 10 74885045 74885045 G A NUDT13 Intron 0.36 TCGA-2W-A8YY-01 10 74885175 74885175 C T NUDT13 Missense_Mutation p.T204M 0.30 tolerated(0.29) probably_damaging(0.984) TCGA-2W-A8YY-01 10 75010464 75010464 C T MRPS16 3'UTR 0.26 TCGA-2W-A8YY-01 10 75029413 75029413 T C TTC18 Missense_Mutation p.N1066D 0.30 tolerated(0.23) possibly_damaging(0.521) TCGA-2W-A8YY-01 10 75082786 75082786 C A TTC18 Missense_Mutation p.G353C 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 75108251 75108251 T G TTC18 Missense_Mutation p.E93D 0.56 tolerated(0.13) probably_damaging(0.987) TCGA-2W-A8YY-01 10 75148118 75148118 C T ANXA7 Missense_Mutation p.D186N 0.37 tolerated(0.33) benign(0.178) TCGA-2W-A8YY-01 10 75184282 75184282 C T MSS51 3'UTR 0.11 TCGA-2W-A8YY-01 10 75188016 75188016 C T MSS51 Silent p.R9R 0.38 TCGA-2W-A8YY-01 10 75197488 75197488 T C PPP3CB 3'UTR 0.47 TCGA-2W-A8YY-01 10 75283454 75283454 C A USP54 Missense_Mutation p.R750M 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 10 75404811 75404811 G T SYNPO2L 3'UTR 0.42 TCGA-2W-A8YY-01 10 75435261 75435261 C T AGAP5 Missense_Mutation p.S386N 0.43 tolerated(0.09) benign(0.016) TCGA-2W-A8YY-01 10 75520511 75520511 A G SEC24C Silent p.G297G 0.46 TCGA-2W-A8YY-01 10 75529148 75529148 G A SEC24C Missense_Mutation p.R823H 0.34 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 10 75531401 75531401 G A SEC24C 3'UTR 0.24 TCGA-2W-A8YY-01 10 75556963 75556963 G A ZSWIM8 Missense_Mutation p.G1123S 0.35 deleterious_low_confidence(0.04) probably_damaging(0.988) TCGA-2W-A8YY-01 10 75558011 75558011 G A ZSWIM8 Missense_Mutation p.A1326T 0.30 tolerated(0.05) probably_damaging(0.996) TCGA-2W-A8YY-01 10 75561146 75561146 C T ZSWIM8 Missense_Mutation p.R1800C 0.17 deleterious(0) probably_damaging(0.942) TCGA-2W-A8YY-01 10 75563405 75563405 G A NDST2 Missense_Mutation p.A690V 0.36 tolerated(0.26) possibly_damaging(0.587) TCGA-2W-A8YY-01 10 75574106 75574106 G A CAMK2G 3'UTR 0.12 TCGA-2W-A8YY-01 10 75673132 75673132 C T PLAU Silent p.C151C 0.23 TCGA-2W-A8YY-01 10 75864962 75864962 G A VCL Missense_Mutation p.R762Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 10 75873970 75873970 G A VCL Missense_Mutation p.R993H 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 10 75882901 75882901 G A AP3M1 3'UTR 0.30 TCGA-2W-A8YY-01 10 7608027 7608027 G A ITIH5 Silent p.S831S 0.39 TCGA-2W-A8YY-01 10 7608295 7608295 C T ITIH5 Missense_Mutation p.R742H 0.44 tolerated(0.27) benign(0.008) TCGA-2W-A8YY-01 10 76602923 76602923 G A KAT6B Missense_Mutation p.R103H 0.45 probably_damaging(0.968) TCGA-2W-A8YY-01 10 76602983 76602983 G T KAT6B Missense_Mutation p.G123V 0.47 probably_damaging(0.995) TCGA-2W-A8YY-01 10 76737141 76737141 C T KAT6B Silent p.V687V 0.47 TCGA-2W-A8YY-01 10 76788767 76788767 C T KAT6B Silent p.I1395I 0.40 TCGA-2W-A8YY-01 10 76789857 76789857 C T KAT6B Missense_Mutation p.P1759S 0.32 probably_damaging(0.998) TCGA-2W-A8YY-01 10 76790387 76790387 C T KAT6B Silent p.A1935A 0.29 TCGA-2W-A8YY-01 10 76791589 76791589 T C KAT6B 3'UTR 0.42 TCGA-2W-A8YY-01 10 7679251 7679251 C T ITIH5 Missense_Mutation p.A198T 0.39 tolerated(0.94) benign(0.004) TCGA-2W-A8YY-01 10 76865447 76865447 G A DUSP13 Intron 0.33 TCGA-2W-A8YY-01 10 76928313 76928313 G A SAMD8 Missense_Mutation p.R230Q 0.45 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 10 76982127 76982127 T C VDAC2 Silent p.A249A 0.39 TCGA-2W-A8YY-01 10 76991061 76991061 G A VDAC2 3'Flank 0.45 TCGA-2W-A8YY-01 10 76993907 76993907 C T COMTD1 Missense_Mutation p.R238H 0.33 deleterious(0.02) possibly_damaging(0.514) TCGA-2W-A8YY-01 10 77158443 77158443 C T ZNF503 3'UTR 0.48 TCGA-2W-A8YY-01 10 7755190 7755190 G C ITIH2 Missense_Mutation p.V137L 0.38 tolerated(0.06) benign(0.084) TCGA-2W-A8YY-01 10 7762845 7762845 G T ITIH2 Missense_Mutation p.Q219H 0.27 deleterious(0) possibly_damaging(0.832) TCGA-2W-A8YY-01 10 7762890 7762890 C T ITIH2 Silent p.F234F 0.34 TCGA-2W-A8YY-01 10 7763618 7763618 G A ITIH2 Missense_Mutation p.V249I 0.49 tolerated(0.3) benign(0.008) TCGA-2W-A8YY-01 10 78316985 78316985 G A C10orf11 Missense_Mutation p.R179H 0.39 tolerated(0.14) benign(0.038) TCGA-2W-A8YY-01 10 79595509 79595509 G A DLG5 Missense_Mutation p.R537C 0.38 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 10 79601787 79601787 C T DLG5 Missense_Mutation p.S430N 0.23 tolerated(0.43) benign(0.064) TCGA-2W-A8YY-01 10 79628974 79628974 C T AL391421.1 3'UTR 0.21 TCGA-2W-A8YY-01 10 79784792 79784792 T C POLR3A Missense_Mutation p.K143E 0.11 tolerated(0.27) benign(0.043) TCGA-2W-A8YY-01 10 79814863 79814863 G A RPS24 3'UTR 0.27 TCGA-2W-A8YY-01 10 8005960 8005960 G T TAF3 Nonsense_Mutation p.E163* 0.36 TCGA-2W-A8YY-01 10 8006435 8006435 C T TAF3 Missense_Mutation p.P321L 0.35 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-2W-A8YY-01 10 8007561 8007561 G A TAF3 Silent p.V696V 0.33 TCGA-2W-A8YY-01 10 81036971 81036971 G A ZMIZ1 Missense_Mutation p.R105H 0.31 probably_damaging(0.994) TCGA-2W-A8YY-01 10 81053154 81053154 C T ZMIZ1 Missense_Mutation p.A325V 0.08 benign(0.178) TCGA-2W-A8YY-01 10 81053247 81053247 C T ZMIZ1 Missense_Mutation p.T356M 0.40 possibly_damaging(0.614) TCGA-2W-A8YY-01 10 81073936 81073936 A G ZMIZ1 3'UTR 0.33 TCGA-2W-A8YY-01 10 81074095 81074095 C A ZMIZ1 3'UTR 0.42 TCGA-2W-A8YY-01 10 81075351 81075351 T G ZMIZ1 3'UTR 0.42 TCGA-2W-A8YY-01 10 81075506 81075506 C T ZMIZ1 3'UTR 0.37 TCGA-2W-A8YY-01 10 81075690 81075690 C T ZMIZ1 3'UTR 0.43 TCGA-2W-A8YY-01 10 81113687 81113687 C T PPIF 3'UTR 0.38 TCGA-2W-A8YY-01 10 81143681 81143681 C T ZCCHC24 3'UTR 0.37 TCGA-2W-A8YY-01 10 81154094 81154094 A T ZCCHC24 Missense_Mutation p.S184T 0.27 deleterious(0.02) possibly_damaging(0.695) TCGA-2W-A8YY-01 10 8116733 8116733 G A GATA3 3'UTR 0.40 TCGA-2W-A8YY-01 10 81192320 81192320 G A ZCCHC24 Silent p.C147C 0.32 TCGA-2W-A8YY-01 10 81274697 81274697 T C EIF5AL1 3'UTR 0.42 TCGA-2W-A8YY-01 10 81275408 81275408 G A EIF5AL1 3'UTR 0.38 TCGA-2W-A8YY-01 10 81275753 81275753 G A EIF5AL1 3'UTR 0.39 TCGA-2W-A8YY-01 10 81275800 81275800 A T EIF5AL1 3'UTR 0.45 TCGA-2W-A8YY-01 10 81682477 81682477 C T MBL1P RNA 0.35 TCGA-2W-A8YY-01 10 81917489 81917489 G A ANXA11 Missense_Mutation p.R456C 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 81928925 81928925 G A ANXA11 Missense_Mutation p.P121S 0.33 tolerated(0.07) unknown(0) TCGA-2W-A8YY-01 10 82034399 82034399 G A MAT1A Missense_Mutation p.A321V 0.27 deleterious(0.02) benign(0.129) TCGA-2W-A8YY-01 10 82111654 82111654 C T DYDC1 Intron 0.20 TCGA-2W-A8YY-01 10 82112258 82112258 C A DYDC1 Missense_Mutation p.A34S 0.31 deleterious(0.02) possibly_damaging(0.872) TCGA-2W-A8YY-01 10 83926549 83926549 G A NRG3 Intron 0.35 TCGA-2W-A8YY-01 10 84738868 84738868 T G NRG3 Silent p.P525P 0.13 TCGA-2W-A8YY-01 10 858246 858246 G A LARP4B 3'UTR 0.31 TCGA-2W-A8YY-01 10 85912497 85912497 C T GHITM 3'UTR 0.35 TCGA-2W-A8YY-01 10 85973020 85973020 G A CDHR1 Nonsense_Mutation p.W652* 0.38 TCGA-2W-A8YY-01 10 85992291 85992291 G A LRIT1 Missense_Mutation p.R422W 0.36 deleterious(0.01) benign(0.28) TCGA-2W-A8YY-01 10 85997019 85997019 C A LRIT1 Missense_Mutation p.E182D 0.33 tolerated(0.19) benign(0.003) TCGA-2W-A8YY-01 10 86018263 86018263 G T RGR Splice_Site p.X253_splice 0.33 TCGA-2W-A8YY-01 10 86131302 86131302 C T CCSER2 Missense_Mutation p.S165L 0.27 deleterious(0.04) possibly_damaging(0.826) TCGA-2W-A8YY-01 10 86131989 86131989 T C CCSER2 Missense_Mutation p.V394A 0.39 tolerated(0.09) probably_damaging(0.995) TCGA-2W-A8YY-01 10 86278243 86278243 G T CCSER2 3'UTR 0.40 TCGA-2W-A8YY-01 10 871703 871703 C T LARP4B Splice_Site p.X411_splice 0.44 TCGA-2W-A8YY-01 10 87373336 87373336 C T GRID1 Missense_Mutation p.R810H 0.11 tolerated(0.06) probably_damaging(0.952) TCGA-2W-A8YY-01 10 87898663 87898663 C T GRID1 Silent p.K213K 0.38 TCGA-2W-A8YY-01 10 88024517 88024517 C T GRID1 Intron 0.47 TCGA-2W-A8YY-01 10 88195846 88195846 A G WAPAL 3'UTR 0.45 TCGA-2W-A8YY-01 10 88259878 88259878 C T WAPAL Silent p.Q374Q 0.28 TCGA-2W-A8YY-01 10 88260490 88260490 C A WAPAL Missense_Mutation p.E170D 0.10 tolerated_low_confidence(0.41) benign(0.001) TCGA-2W-A8YY-01 10 88681341 88681341 G A BMPR1A Missense_Mutation p.E411K 0.48 deleterious(0) probably_damaging(0.948) TCGA-2W-A8YY-01 10 88703053 88703053 C T MMRN2 Silent p.K496K 0.30 TCGA-2W-A8YY-01 10 88703145 88703145 G A MMRN2 Missense_Mutation p.R466W 0.40 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 10 88730009 88730009 G A ADIRF Silent p.A38A 0.26 TCGA-2W-A8YY-01 10 88761489 88761489 A C RP11-96C23.14 RNA 0.40 TCGA-2W-A8YY-01 10 88761494 88761494 G A RP11-96C23.14 Splice_Site 0.41 TCGA-2W-A8YY-01 10 88768544 88768544 G A RP11-96C23.10 3'Flank 0.07 TCGA-2W-A8YY-01 10 88768663 88768663 G A RP11-96C23.10 3'Flank 0.31 TCGA-2W-A8YY-01 10 88768888 88768888 G T RP11-96C23.10 3'Flank 0.35 TCGA-2W-A8YY-01 10 89473801 89473801 G A PAPSS2 Missense_Mutation p.D128N 0.61 deleterious(0) possibly_damaging(0.884) TCGA-2W-A8YY-01 10 89473817 89473817 G A PAPSS2 Missense_Mutation p.R133H 0.32 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 10 89507291 89507291 G A PAPSS2 3'UTR 0.40 TCGA-2W-A8YY-01 10 89685269 89685269 G A PTEN Splice_Site p.X55_splice 0.32 TCGA-2W-A8YY-01 10 89692940 89692940 C T PTEN Missense_Mutation p.R142W 0.37 deleterious(0.01) probably_damaging(0.935) TCGA-2W-A8YY-01 10 89711899 89711899 C T PTEN Missense_Mutation p.R173C 0.11 deleterious(0.02) probably_damaging(0.913) TCGA-2W-A8YY-01 10 89717712 89717712 C T PTEN Missense_Mutation p.P246L 0.36 tolerated(0.06) benign(0.132) TCGA-2W-A8YY-01 10 89720870 89720870 T G PTEN Missense_Mutation p.F341V 0.20 deleterious(0) possibly_damaging(0.862) TCGA-2W-A8YY-01 10 90698179 90698179 C A ACTA2 Intron 0.31 TCGA-2W-A8YY-01 10 90773982 90773982 G T FAS Missense_Mutation p.E261D 0.34 tolerated(0.24) benign(0.07) TCGA-2W-A8YY-01 10 909690 909690 G A LARP4B Silent p.S141S 0.30 TCGA-2W-A8YY-01 10 91172641 91172641 C T IFIT5 5'Flank 0.33 TCGA-2W-A8YY-01 10 91190563 91190563 C G SLC16A12 3'UTR 0.39 TCGA-2W-A8YY-01 10 91343648 91343648 A - PANK1 3'UTR 0.30 TCGA-2W-A8YY-01 10 91470748 91470748 G A KIF20B Missense_Mutation p.R174Q 0.11 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 10 92645619 92645619 G T RPP30 Missense_Mutation p.E131D 0.38 tolerated(0.13) possibly_damaging(0.838) TCGA-2W-A8YY-01 10 93000334 93000334 T C PCGF5 Missense_Mutation p.L69S 0.38 deleterious(0) probably_damaging(0.972) TCGA-2W-A8YY-01 10 93038376 93038376 C T PCGF5 3'UTR 0.62 TCGA-2W-A8YY-01 10 930385 930385 A G LARP4B Splice_Site p.X47_splice 0.26 TCGA-2W-A8YY-01 10 93041316 93041316 A T PCGF5 3'UTR 0.31 TCGA-2W-A8YY-01 10 93042232 93042232 C A PCGF5 3'UTR 0.55 TCGA-2W-A8YY-01 10 93253251 93253251 C T HECTD2 Nonsense_Mutation p.R503* 0.13 TCGA-2W-A8YY-01 10 93373 93373 C T TUBB8 Missense_Mutation p.R320H 0.12 tolerated_low_confidence(0.1) benign(0.015) TCGA-2W-A8YY-01 10 93622975 93622975 C T TNKS2 3'UTR 0.32 TCGA-2W-A8YY-01 10 93623322 93623322 C A TNKS2 3'UTR 0.50 TCGA-2W-A8YY-01 10 93667889 93667889 G A FGFBP3 3'UTR 0.28 TCGA-2W-A8YY-01 10 93711190 93711190 G A BTAF1 Missense_Mutation p.R144H 0.33 deleterious(0.03) benign(0.043) TCGA-2W-A8YY-01 10 93786890 93786890 C T BTAF1 Missense_Mutation p.R1747C 0.35 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 10 93786901 93786901 C T BTAF1 Silent p.N1750N 0.35 TCGA-2W-A8YY-01 10 93809217 93809217 G A CPEB3 3'Flank 0.28 TCGA-2W-A8YY-01 10 93810242 93810242 A - CPEB3 3'UTR 0.27 TCGA-2W-A8YY-01 10 93811275 93811275 G A CPEB3 3'UTR 0.22 TCGA-2W-A8YY-01 10 94234712 94234712 G A IDE Nonsense_Mutation p.R668* 0.40 TCGA-2W-A8YY-01 10 94246968 94246968 G A IDE Silent p.Y547Y 0.39 TCGA-2W-A8YY-01 10 94250249 94250249 C T IDE Splice_Site p.X511_splice 0.37 TCGA-2W-A8YY-01 10 94834975 94834975 C T CYP26A1 Missense_Mutation p.R259W 0.36 tolerated(0.1) benign(0.269) TCGA-2W-A8YY-01 10 94835066 94835066 T C CYP26A1 Splice_Site p.X288_splice 0.29 TCGA-2W-A8YY-01 10 95076568 95076568 C T MYOF Silent p.E1867E 0.42 TCGA-2W-A8YY-01 10 95115478 95115478 C T MYOF Missense_Mutation p.E1104K 0.47 tolerated(0.18) benign(0.029) TCGA-2W-A8YY-01 10 95127 95127 C T TUBB8 Missense_Mutation p.A18T 0.42 tolerated_low_confidence(0.25) benign(0.036) TCGA-2W-A8YY-01 10 95129435 95129435 G A MYOF Silent p.F852F 0.39 TCGA-2W-A8YY-01 10 95163825 95163825 A G MYOF Silent p.Y266Y 0.38 TCGA-2W-A8YY-01 10 95185895 95185895 G A MYOF Silent p.I122I 0.27 TCGA-2W-A8YY-01 10 95259877 95259877 C T CEP55 Silent p.S23S 0.42 TCGA-2W-A8YY-01 10 95326481 95326481 T C FFAR4 Missense_Mutation p.S2P 0.42 deleterious_low_confidence(0.01) benign(0.265) TCGA-2W-A8YY-01 10 95335850 95335850 A C FFAR4 Missense_Mutation p.E190D 0.43 tolerated(0.15) benign(0.05) TCGA-2W-A8YY-01 10 95381 95381 A C TUBB8 5'Flank 0.29 TCGA-2W-A8YY-01 10 95415598 95415598 G A PDE6C Missense_Mutation p.D673N 0.32 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 10 95662405 95662405 T C SLC35G1 3'UTR 0.08 TCGA-2W-A8YY-01 10 95791937 95791937 A G PLCE1 Silent p.V378V 0.15 TCGA-2W-A8YY-01 10 96058245 96058245 G A PLCE1 Silent p.S1759S 0.29 TCGA-2W-A8YY-01 10 96094438 96094438 C T NOC3L Missense_Mutation p.E743K 0.41 tolerated(0.64) benign(0.147) TCGA-2W-A8YY-01 10 96281778 96281778 G A TBC1D12 Missense_Mutation p.A610T 0.46 tolerated(0.11) possibly_damaging(0.62) TCGA-2W-A8YY-01 10 96305691 96305691 C T HELLS Missense_Mutation p.R5W 0.26 deleterious_low_confidence(0.01) benign(0.28) TCGA-2W-A8YY-01 10 96361386 96361386 G A HELLS 3'UTR 0.25 TCGA-2W-A8YY-01 10 96702125 96702125 A G CYP2C9 Intron 0.38 TCGA-2W-A8YY-01 10 96829161 96829161 G A CYP2C8 5'UTR 0.19 TCGA-2W-A8YY-01 10 97007086 97007086 C T PDLIM1 Missense_Mutation p.D191N 0.29 tolerated(0.08) benign(0.005) TCGA-2W-A8YY-01 10 97031521 97031521 C T PDLIM1 Silent p.A39A 0.40 TCGA-2W-A8YY-01 10 97453612 97453612 C T TCTN3 Silent p.V15V 0.35 TCGA-2W-A8YY-01 10 97698235 97698235 T C C10orf131 3'UTR 0.33 TCGA-2W-A8YY-01 10 97916453 97916453 G A ZNF518A RNA 0.45 TCGA-2W-A8YY-01 10 97917758 97917758 T C ZNF518A RNA 0.21 TCGA-2W-A8YY-01 10 97918252 97918252 G A ZNF518A RNA 0.26 TCGA-2W-A8YY-01 10 98129947 98129947 C T TLL2 Missense_Mutation p.G930S 0.43 tolerated(0.27) benign(0.219) TCGA-2W-A8YY-01 10 98355109 98355109 C T PIK3AP1 3'UTR 0.41 TCGA-2W-A8YY-01 10 98363756 98363756 C T PIK3AP1 Missense_Mutation p.G741R 0.14 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 98376461 98376461 A C PIK3AP1 Missense_Mutation p.L650R 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 10 98380170 98380170 A G PIK3AP1 Missense_Mutation p.L627P 0.14 deleterious(0.03) probably_damaging(0.942) TCGA-2W-A8YY-01 10 98708894 98708894 G A LCOR Missense_Mutation p.S27N 0.44 deleterious(0.05) possibly_damaging(0.827) TCGA-2W-A8YY-01 10 98716403 98716403 C T LCOR 3'UTR 0.33 TCGA-2W-A8YY-01 10 98717674 98717674 A G LCOR 3'UTR 0.40 TCGA-2W-A8YY-01 10 98742250 98742250 C T C10orf12 Missense_Mutation p.S368F 0.43 tolerated(0.09) possibly_damaging(0.865) TCGA-2W-A8YY-01 10 98744874 98744874 C T C10orf12 Missense_Mutation p.R1243W 0.62 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 98744973 98744973 C T C10orf12 3'UTR 0.13 TCGA-2W-A8YY-01 10 98760933 98760933 T C SLIT1 Missense_Mutation p.D1514G 0.28 deleterious(0) benign(0.345) TCGA-2W-A8YY-01 10 98762587 98762587 C T SLIT1 Missense_Mutation p.R1343H 0.30 tolerated(0.47) benign(0.048) TCGA-2W-A8YY-01 10 98764566 98764566 C A SLIT1 Missense_Mutation p.E1198D 0.37 deleterious(0.03) possibly_damaging(0.906) TCGA-2W-A8YY-01 10 98802734 98802734 C T SLIT1 Silent p.P696P 0.35 TCGA-2W-A8YY-01 10 98807554 98807554 G A SLIT1 Silent p.S509S 0.45 TCGA-2W-A8YY-01 10 99019221 99019221 T G ARHGAP19 Missense_Mutation p.N260H 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 10 99080381 99080381 C T FRAT1 3'UTR 0.38 TCGA-2W-A8YY-01 10 99130884 99130884 T C RRP12 Intron 0.18 TCGA-2W-A8YY-01 10 99160262 99160262 T G RRP12 Missense_Mutation p.K57Q 0.29 tolerated(0.09) benign(0.025) TCGA-2W-A8YY-01 10 99213413 99213413 C T ZDHHC16 Missense_Mutation p.A228V 0.41 deleterious(0.04) benign(0.444) TCGA-2W-A8YY-01 10 99374462 99374462 G A MORN4 3'UTR 0.17 TCGA-2W-A8YY-01 10 99374805 99374805 T - MORN4 3'UTR 0.14 TCGA-2W-A8YY-01 10 99435388 99435388 C T PI4K2A 3'UTR 0.38 TCGA-2W-A8YY-01 10 99437742 99437742 C T AVPI1 Missense_Mutation p.A110T 0.47 tolerated(0.35) benign(0.008) TCGA-2W-A8YY-01 10 99661353 99661353 G A CRTAC1 Missense_Mutation p.T347M 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 10 99664428 99664428 G A CRTAC1 Missense_Mutation p.R332W 0.31 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 10 99770960 99770960 C A CRTAC1 Missense_Mutation p.Q53H 0.62 deleterious(0.01) probably_damaging(0.979) TCGA-2W-A8YY-01 11 100169952 100169952 C A CNTN5 Missense_Mutation p.P815H 0.36 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 11 100845194 100845194 T C ARHGAP42 Missense_Mutation p.F572S 0.27 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 11 1016333 1016333 C T MUC6 Silent p.S2156S 0.24 TCGA-2W-A8YY-01 11 101786093 101786093 C T KIAA1377 Silent p.A26A 0.09 TCGA-2W-A8YY-01 11 1017910 1017910 C T MUC6 Missense_Mutation p.V1631I 0.09 unknown(0) TCGA-2W-A8YY-01 11 101834474 101834474 C T KIAA1377 Missense_Mutation p.A903V 0.32 deleterious(0.04) benign(0.005) TCGA-2W-A8YY-01 11 102033254 102033254 G A YAP1 Missense_Mutation p.A214T 0.45 tolerated(0.16) benign(0.004) TCGA-2W-A8YY-01 11 102076648 102076648 G A YAP1 Missense_Mutation p.S276N 0.27 tolerated(0.1) benign(0.019) TCGA-2W-A8YY-01 11 102221577 102221577 C T BIRC2 Missense_Mutation p.R300C 0.34 tolerated(0.07) benign(0.02) TCGA-2W-A8YY-01 11 102480641 102480641 G A MMP20 Missense_Mutation p.T215M 0.28 tolerated(0.33) benign(0.034) TCGA-2W-A8YY-01 11 102495952 102495952 G A MMP20 Silent p.T33T 0.30 TCGA-2W-A8YY-01 11 1025011 1025011 C T MUC6 Missense_Mutation p.V1020M 0.38 unknown(0) TCGA-2W-A8YY-01 11 102567170 102567170 G T MMP27 Silent p.A278A 0.38 TCGA-2W-A8YY-01 11 102822802 102822802 G A MMP13 Silent p.Y246Y 0.36 TCGA-2W-A8YY-01 11 103070102 103070102 G A DYNC2H1 Missense_Mutation p.R2662Q 0.43 possibly_damaging(0.9) TCGA-2W-A8YY-01 11 103091509 103091509 A G DYNC2H1 Missense_Mutation p.K3035R 0.09 possibly_damaging(0.598) TCGA-2W-A8YY-01 11 103102018 103102018 G A DYNC2H1 Missense_Mutation p.R3128K 0.56 benign(0.001) TCGA-2W-A8YY-01 11 10327621 10327621 G A ADM Missense_Mutation p.G75D 0.43 tolerated(0.97) benign(0.017) TCGA-2W-A8YY-01 11 103306760 103306760 G T DYNC2H1 Missense_Mutation p.Q4159H 0.33 benign(0.086) TCGA-2W-A8YY-01 11 103908146 103908146 G A DDI1 Missense_Mutation p.R199H 0.25 deleterious(0.01) benign(0.015) TCGA-2W-A8YY-01 11 103908577 103908577 G A DDI1 Missense_Mutation p.D343N 0.28 deleterious(0) probably_damaging(0.914) TCGA-2W-A8YY-01 11 103909363 103909363 G A DDI1 3'UTR 0.10 TCGA-2W-A8YY-01 11 104817888 104817888 G A CASP4 Silent p.G319G 0.31 TCGA-2W-A8YY-01 11 104821669 104821669 C T CASP4 Missense_Mutation p.E177K 0.30 tolerated(0.28) benign(0.06) TCGA-2W-A8YY-01 11 104872858 104872858 T C CASP5 Missense_Mutation p.H218R 0.11 deleterious(0.01) possibly_damaging(0.864) TCGA-2W-A8YY-01 11 104897048 104897048 C T CASP1 Silent p.A384A 0.25 TCGA-2W-A8YY-01 11 104897076 104897076 A G CASP1 Missense_Mutation p.F375S 0.25 tolerated(0.43) possibly_damaging(0.504) TCGA-2W-A8YY-01 11 104897684 104897684 G A CASP1 Intron 0.52 TCGA-2W-A8YY-01 11 104905086 104905086 C A CASP1 Missense_Mutation p.E41D 0.33 tolerated(0.07) possibly_damaging(0.814) TCGA-2W-A8YY-01 11 10508889 10508889 G A AMPD3 Missense_Mutation p.R315Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 10514973 10514973 G A AMPD3 Silent p.T348T 0.30 TCGA-2W-A8YY-01 11 10516498 10516499 - G AMPD3 Frame_Shift_Ins p.A407Gfs*3 0.21 TCGA-2W-A8YY-01 11 10523046 10523046 G C AMPD3 Missense_Mutation p.R593P 0.42 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 11 10533863 10533863 T C RNF141 3'UTR 0.29 TCGA-2W-A8YY-01 11 10533875 10533875 C A RNF141 3'UTR 0.27 TCGA-2W-A8YY-01 11 105795406 105795406 C T GRIA4 Silent p.S586S 0.42 TCGA-2W-A8YY-01 11 105845096 105845096 C T GRIA4 Silent p.G823G 0.28 TCGA-2W-A8YY-01 11 105851097 105851097 T G GRIA4 3'UTR 0.12 TCGA-2W-A8YY-01 11 105851149 105851149 C T GRIA4 3'UTR 0.35 TCGA-2W-A8YY-01 11 105950193 105950193 G T AASDHPPT Splice_Site p.X62_splice 0.33 TCGA-2W-A8YY-01 11 105967615 105967615 G A AASDHPPT Missense_Mutation p.R304Q 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.758) TCGA-2W-A8YY-01 11 10647770 10647770 C A MRVI1 Missense_Mutation p.G371W 0.47 deleterious(0) possibly_damaging(0.819) TCGA-2W-A8YY-01 11 106579369 106579369 G A GUCY1A2 Silent p.G651G 0.45 TCGA-2W-A8YY-01 11 107299650 107299650 C T CWF19L2 Silent p.S436S 0.39 TCGA-2W-A8YY-01 11 107420542 107420542 G A ALKBH8 Silent p.P236P 0.42 TCGA-2W-A8YY-01 11 107501287 107501287 C T ELMOD1 Silent p.I54I 0.27 TCGA-2W-A8YY-01 11 107537359 107537359 T C ELMOD1 3'UTR 0.08 TCGA-2W-A8YY-01 11 107676138 107676138 C A SLC35F2 Missense_Mutation p.Q226H 0.40 deleterious(0.02) benign(0.094) TCGA-2W-A8YY-01 11 107677570 107677570 C T SLC35F2 Missense_Mutation p.M149I 0.25 tolerated(0.3) benign(0.088) TCGA-2W-A8YY-01 11 10786256 10786256 C T CTR9 Silent p.R525R 0.17 TCGA-2W-A8YY-01 11 10791868 10791868 C T CTR9 Silent p.L741L 0.28 TCGA-2W-A8YY-01 11 107944202 107944202 G A CUL5 Missense_Mutation p.R364Q 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 11 108043103 108043103 T C NPAT Missense_Mutation p.T870A 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 11 108043499 108043499 C T NPAT Missense_Mutation p.V738I 0.23 tolerated(0.08) possibly_damaging(0.801) TCGA-2W-A8YY-01 11 108093302 108093302 C T NPAT 5'UTR 0.28 TCGA-2W-A8YY-01 11 108115727 108115727 C T ATM Missense_Mutation p.P292L 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 108122573 108122573 A G ATM Silent p.V539V 0.31 TCGA-2W-A8YY-01 11 108138041 108138041 C T ATM Silent p.N870N 0.35 TCGA-2W-A8YY-01 11 108236256 108236256 C A ATM 3'UTR 0.41 TCGA-2W-A8YY-01 11 108302559 108302559 C T C11orf65 Missense_Mutation p.A30T 0.53 tolerated(0.47) benign(0.016) TCGA-2W-A8YY-01 11 108381192 108381192 C A EXPH5 Missense_Mutation p.R1681I 0.42 deleterious(0.02) possibly_damaging(0.606) TCGA-2W-A8YY-01 11 108383172 108383172 G A EXPH5 Missense_Mutation p.T1021I 0.28 deleterious(0.04) benign(0.151) TCGA-2W-A8YY-01 11 108385275 108385275 G A EXPH5 Missense_Mutation p.S320L 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 108549103 108549103 G A DDX10 Missense_Mutation p.R200Q 0.24 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 108712168 108712168 G T DDX10 Nonsense_Mutation p.E738* 0.59 TCGA-2W-A8YY-01 11 108811288 108811288 G A DDX10 3'UTR 0.35 TCGA-2W-A8YY-01 11 110030117 110030117 T C ZC3H12C Silent p.I350I 0.36 TCGA-2W-A8YY-01 11 110102640 110102640 C T RDX Missense_Mutation p.R569Q 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 110104180 110104180 C T RDX Missense_Mutation p.E457K 0.37 tolerated(0.46) possibly_damaging(0.507) TCGA-2W-A8YY-01 11 110134947 110134947 C A RDX Missense_Mutation p.D69Y 0.13 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 11 1104232 1104232 G A MUC2 Missense_Mutation p.R2808Q 0.38 unknown(0) TCGA-2W-A8YY-01 11 110461391 110461391 A G ARHGAP20 Missense_Mutation p.V429A 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 111167086 111167086 C T COLCA1 Missense_Mutation p.D40N 0.41 possibly_damaging(0.741) TCGA-2W-A8YY-01 11 111168093 111168093 C A COLCA1 5'UTR 0.50 TCGA-2W-A8YY-01 11 111168594 111168594 C T COLCA1 5'UTR 0.52 TCGA-2W-A8YY-01 11 111168782 111168782 C T COLCA1 5'UTR 0.44 TCGA-2W-A8YY-01 11 111169126 111169126 C T COLCA1 5'UTR 0.43 TCGA-2W-A8YY-01 11 111169251 111169251 C T COLCA1 5'UTR 0.40 TCGA-2W-A8YY-01 11 111407549 111407549 C T C11orf88 Silent p.D196D 0.36 TCGA-2W-A8YY-01 11 111596349 111596349 G A SIK2 3'UTR 0.41 TCGA-2W-A8YY-01 11 111597478 111597478 C T SIK2 3'UTR 0.39 TCGA-2W-A8YY-01 11 111611801 111611801 G A PPP2R1B Intron 0.25 TCGA-2W-A8YY-01 11 111635571 111635571 G T PPP2R1B Missense_Mutation p.F88L 0.51 tolerated(0.17) possibly_damaging(0.454) TCGA-2W-A8YY-01 11 111636992 111636992 G A PPP2R1B Missense_Mutation p.L32F 0.35 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 11 111779516 111779516 G A CRYAB Missense_Mutation p.P167L 0.37 deleterious(0) possibly_damaging(0.9) TCGA-2W-A8YY-01 11 111845687 111845687 G A DIXDC1 Silent p.P212P 0.26 TCGA-2W-A8YY-01 11 111864410 111864410 G A DIXDC1 Silent p.E460E 0.25 TCGA-2W-A8YY-01 11 111896027 111896027 G T DLAT 5'UTR 0.37 TCGA-2W-A8YY-01 11 113078059 113078059 C T NCAM1 Silent p.C294C 0.47 TCGA-2W-A8YY-01 11 113078702 113078702 G A NCAM1 Silent p.A357A 0.39 TCGA-2W-A8YY-01 11 113103033 113103033 G A NCAM1 Missense_Mutation p.S510N 0.45 deleterious(0.01) benign(0.104) TCGA-2W-A8YY-01 11 11314732 11314732 G A GALNT18 Silent p.Y507Y 0.20 TCGA-2W-A8YY-01 11 113186971 113186971 C T TTC12 5'UTR 0.26 TCGA-2W-A8YY-01 11 113270891 113270891 C T ANKK1 Missense_Mutation p.R734C 0.31 tolerated(0.06) benign(0.049) TCGA-2W-A8YY-01 11 113283492 113283492 G T DRD2 Silent p.P308P 0.26 TCGA-2W-A8YY-01 11 113560963 113560963 T G TMPRSS5 Missense_Mutation p.D399A 0.11 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 11 113577061 113577061 C A TMPRSS5 5'UTR 0.16 TCGA-2W-A8YY-01 11 113700038 113700038 C T USP28 Missense_Mutation p.G314S 0.32 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 11 113701609 113701609 A G USP28 Missense_Mutation p.L297P 0.23 deleterious(0) possibly_damaging(0.759) TCGA-2W-A8YY-01 11 113711432 113711432 C T USP28 Missense_Mutation p.R141H 0.32 tolerated(0.28) probably_damaging(0.999) TCGA-2W-A8YY-01 11 113725042 113725042 A G USP28 Silent p.L25L 0.12 TCGA-2W-A8YY-01 11 11373823 11373823 C T CSNK2A3 Missense_Mutation p.E282K 0.25 tolerated(0.16) benign(0.087) TCGA-2W-A8YY-01 11 113813888 113813888 G A HTR3B Missense_Mutation p.R294Q 0.42 tolerated(0.15) benign(0.099) TCGA-2W-A8YY-01 11 113816904 113816904 G T HTR3B 3'UTR 0.31 TCGA-2W-A8YY-01 11 113853966 113853966 G A HTR3A Missense_Mutation p.D173N 0.35 deleterious(0.02) probably_damaging(0.969) TCGA-2W-A8YY-01 11 113857257 113857257 G A HTR3A Silent p.R247R 0.35 TCGA-2W-A8YY-01 11 114027127 114027127 G A ZBTB16 Missense_Mutation p.R446Q 0.35 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 11 114168825 114168825 G T NNMT Nonsense_Mutation p.E103* 0.48 TCGA-2W-A8YY-01 11 114270917 114270917 G A C11orf71 Missense_Mutation p.P46L 0.29 tolerated_low_confidence(0.07) possibly_damaging(0.824) TCGA-2W-A8YY-01 11 114441613 114441613 A G NXPE4 3'Flank 0.47 TCGA-2W-A8YY-01 11 114453085 114453085 G T NXPE4 Missense_Mutation p.A252D 0.33 tolerated(0.37) benign(0.392) TCGA-2W-A8YY-01 11 115046406 115046406 A G CADM1 3'UTR 0.19 TCGA-2W-A8YY-01 11 116629840 116629840 C T BUD13 Missense_Mutation p.R437Q 0.46 tolerated(0.11) benign(0.01) TCGA-2W-A8YY-01 11 116633684 116633684 C T BUD13 Silent p.Q207Q 0.36 TCGA-2W-A8YY-01 11 116649650 116649650 C T ZNF259 Silent p.P457P 0.32 TCGA-2W-A8YY-01 11 116661041 116661041 C T APOA5 Missense_Mutation p.A302T 0.38 tolerated(0.25) benign(0.231) TCGA-2W-A8YY-01 11 116692257 116692257 C T APOA4 Missense_Mutation p.D173N 0.48 tolerated(0.21) benign(0.139) TCGA-2W-A8YY-01 11 116707001 116707001 C A APOA1 Missense_Mutation p.E109D 0.12 tolerated(0.07) possibly_damaging(0.491) TCGA-2W-A8YY-01 11 116707769 116707769 C T APOA1 Missense_Mutation p.G50S 0.51 tolerated(0.08) possibly_damaging(0.684) TCGA-2W-A8YY-01 11 116717147 116717147 C T SIK3 Missense_Mutation p.E1253K 0.13 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-2W-A8YY-01 11 117052657 117052657 G A SIDT2 Missense_Mutation p.R147Q 0.29 tolerated(0.32) benign(0.046) TCGA-2W-A8YY-01 11 117060969 117060969 C T SIDT2 Silent p.H527H 0.35 TCGA-2W-A8YY-01 11 117063357 117063357 G A SIDT2 Silent p.P683P 0.24 TCGA-2W-A8YY-01 11 117064614 117064614 G A SIDT2 Missense_Mutation p.V753I 0.59 tolerated(0.6) benign(0.003) TCGA-2W-A8YY-01 11 117073880 117073880 G A TAGLN Missense_Mutation p.G51S 0.29 tolerated(0.15) benign(0.434) TCGA-2W-A8YY-01 11 117097877 117097877 G A PCSK7 Silent p.I255I 0.47 TCGA-2W-A8YY-01 11 117109566 117109566 G - RNF214 Frame_Shift_Del p.D121Tfs*40 0.30 TCGA-2W-A8YY-01 11 117164719 117164719 G A BACE1 Silent p.D191D 0.48 TCGA-2W-A8YY-01 11 117241911 117241911 G T CEP164 Missense_Mutation p.S294I 0.42 deleterious(0) possibly_damaging(0.841) TCGA-2W-A8YY-01 11 117261578 117261578 C T CEP164 Nonsense_Mutation p.R674* 0.46 TCGA-2W-A8YY-01 11 117265669 117265669 G A CEP164 Missense_Mutation p.E932K 0.39 deleterious(0.01) probably_damaging(0.909) TCGA-2W-A8YY-01 11 117279660 117279660 G A CEP164 Missense_Mutation p.D1222N 0.33 deleterious(0) benign(0.263) TCGA-2W-A8YY-01 11 117301616 117301616 G T DSCAML1 Silent p.I1896I 0.26 TCGA-2W-A8YY-01 11 117307888 117307888 G A DSCAML1 Missense_Mutation p.A1617V 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 11 117308027 117308027 T C DSCAML1 Missense_Mutation p.T1571A 0.50 deleterious(0.02) benign(0.089) TCGA-2W-A8YY-01 11 117710392 117710392 C T FXYD6 Intron 0.33 TCGA-2W-A8YY-01 11 117774484 117774484 G A TMPRSS13 Silent p.N521N 0.42 TCGA-2W-A8YY-01 11 117864791 117864791 G A IL10RA Silent p.V205V 0.26 TCGA-2W-A8YY-01 11 117985880 117985880 C T TMPRSS4 Missense_Mutation p.A346V 0.38 deleterious(0) possibly_damaging(0.864) TCGA-2W-A8YY-01 11 118015783 118015783 C T SCN4B Missense_Mutation p.A75T 0.08 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 11 118065133 118065133 C T AMICA1 Splice_Site p.X365_splice 0.40 TCGA-2W-A8YY-01 11 118124595 118124596 - A MPZL2 3'UTR 0.28 TCGA-2W-A8YY-01 11 118250210 118250210 G T UBE4A Missense_Mutation p.V548F 0.49 deleterious(0.05) possibly_damaging(0.555) TCGA-2W-A8YY-01 11 118305582 118305582 C A RP11-770J1.4 Missense_Mutation p.R80I 0.39 possibly_damaging(0.506) TCGA-2W-A8YY-01 11 118348802 118348802 C T KMT2A Missense_Mutation p.S1152L 0.29 probably_damaging(0.99) TCGA-2W-A8YY-01 11 118353168 118353168 T C KMT2A Silent p.A1348A 0.24 TCGA-2W-A8YY-01 11 118355584 118355584 G A KMT2A Missense_Mutation p.C1409Y 0.17 probably_damaging(0.996) TCGA-2W-A8YY-01 11 118372418 118372418 T C KMT2A Silent p.A2117A 0.29 TCGA-2W-A8YY-01 11 118473629 118473629 C T ARCN1 3'UTR 0.44 TCGA-2W-A8YY-01 11 118495706 118495706 G A PHLDB1 Missense_Mutation p.A138T 0.44 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 11 118499092 118499092 G A PHLDB1 Missense_Mutation p.S518N 0.31 deleterious(0) possibly_damaging(0.877) TCGA-2W-A8YY-01 11 118499134 118499134 G A PHLDB1 Missense_Mutation p.G532D 0.35 deleterious(0.02) probably_damaging(0.968) TCGA-2W-A8YY-01 11 118516093 118516093 G A PHLDB1 Silent p.E1047E 0.17 TCGA-2W-A8YY-01 11 118528573 118528573 G T TREH 3'Flank 0.52 TCGA-2W-A8YY-01 11 118622247 118622247 A C DDX6 3'UTR 0.50 TCGA-2W-A8YY-01 11 118651874 118651874 T C DDX6 Missense_Mutation p.K74E 0.29 tolerated(0.46) benign(0.002) TCGA-2W-A8YY-01 11 118754697 118754697 A G CXCR5 Missense_Mutation p.D16G 0.45 deleterious(0.04) benign(0) TCGA-2W-A8YY-01 11 118765121 118765121 G A CXCR5 Missense_Mutation p.V290M 0.36 tolerated(0.23) benign(0.023) TCGA-2W-A8YY-01 11 118767381 118767381 G A BCL9L 3'UTR 0.41 TCGA-2W-A8YY-01 11 118768114 118768114 C T BCL9L 3'UTR 0.27 TCGA-2W-A8YY-01 11 118773197 118773197 G A BCL9L Nonsense_Mutation p.R419* 0.41 TCGA-2W-A8YY-01 11 118779232 118779232 G A BCL9L Silent p.G53G 0.52 TCGA-2W-A8YY-01 11 118888700 118888700 C T RPS25 Missense_Mutation p.V23M 0.28 tolerated(0.06) possibly_damaging(0.816) TCGA-2W-A8YY-01 11 118917342 118917342 C T HYOU1 Missense_Mutation p.G923E 0.10 tolerated(0.49) benign(0.001) TCGA-2W-A8YY-01 11 118919004 118919004 C T HYOU1 Missense_Mutation p.A778T 0.32 tolerated(0.25) benign(0.013) TCGA-2W-A8YY-01 11 118923438 118923438 G A HYOU1 Missense_Mutation p.R300W 0.32 tolerated(0.13) possibly_damaging(0.849) TCGA-2W-A8YY-01 11 118963866 118963866 C T HMBS Missense_Mutation p.A320V 0.46 deleterious(0.04) probably_damaging(0.98) TCGA-2W-A8YY-01 11 118968657 118968657 C T DPAGT1 Missense_Mutation p.M275I 0.10 deleterious(0.03) probably_damaging(0.991) TCGA-2W-A8YY-01 11 119002645 119002645 A G HINFP Missense_Mutation p.N210S 0.19 tolerated(0.25) possibly_damaging(0.714) TCGA-2W-A8YY-01 11 119032910 119032910 T C ABCG4 3'UTR 0.34 TCGA-2W-A8YY-01 11 119032919 119032919 G A ABCG4 3'UTR 0.39 TCGA-2W-A8YY-01 11 119052824 119052824 G A NLRX1 Silent p.T792T 0.31 TCGA-2W-A8YY-01 11 119054263 119054263 G T NLRX1 3'UTR 0.47 TCGA-2W-A8YY-01 11 119059779 119059779 C T PDZD3 Silent p.N451N 0.47 TCGA-2W-A8YY-01 11 119155973 119155973 G A CBL Silent p.P546P 0.49 TCGA-2W-A8YY-01 11 119181161 119181161 A G MCAM Silent p.S603S 0.40 TCGA-2W-A8YY-01 11 119209649 119209649 T C RNF26 3'Flank 0.37 TCGA-2W-A8YY-01 11 119216607 119216607 G T MFRP Silent p.S101S 0.30 TCGA-2W-A8YY-01 11 119226863 119226863 G A USP2 3'UTR 0.50 TCGA-2W-A8YY-01 11 119243828 119243828 G T USP2 Nonsense_Mutation p.C121* 0.32 TCGA-2W-A8YY-01 11 119291041 119291041 G A THY1 Silent p.D31D 0.43 TCGA-2W-A8YY-01 11 11941916 11941916 C A USP47 Missense_Mutation p.L297M 0.29 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 11 11964232 11964232 C T USP47 Silent p.I820I 0.19 TCGA-2W-A8YY-01 11 11990030 11990030 C T DKK3 Missense_Mutation p.C147Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 119996547 119996547 G T TRIM29 Silent p.T395T 0.11 TCGA-2W-A8YY-01 11 120008025 120008025 C T TRIM29 Missense_Mutation p.D239N 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 120096501 120096501 G A OAF Silent p.R121R 0.33 TCGA-2W-A8YY-01 11 120097623 120097623 C T OAF Silent p.S155S 0.33 TCGA-2W-A8YY-01 11 120190413 120190413 G A POU2F3 3'UTR 0.24 TCGA-2W-A8YY-01 11 120201164 120201164 G A TMEM136 Nonsense_Mutation p.W248* 0.48 TCGA-2W-A8YY-01 11 12023948 12023948 C A DKK3 Nonsense_Mutation p.E84* 0.32 TCGA-2W-A8YY-01 11 120302484 120302484 G A ARHGEF12 Missense_Mutation p.G263E 0.14 deleterious(0.04) possibly_damaging(0.493) TCGA-2W-A8YY-01 11 120327896 120327896 C T ARHGEF12 Missense_Mutation p.T709I 0.45 deleterious(0.05) benign(0.081) TCGA-2W-A8YY-01 11 120346164 120346164 G A ARHGEF12 Silent p.T1075T 0.29 TCGA-2W-A8YY-01 11 120346202 120346202 G A ARHGEF12 Missense_Mutation p.R1088Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 120745869 120745869 G A GRIK4 Missense_Mutation p.G361S 0.38 deleterious(0.01) benign(0.163) TCGA-2W-A8YY-01 11 120976603 120976603 A G TECTA Missense_Mutation p.D43G 0.36 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 11 120980006 120980006 C T TECTA Silent p.F95F 0.34 TCGA-2W-A8YY-01 11 120989345 120989345 C T TECTA Missense_Mutation p.A374V 0.33 tolerated(0.35) benign(0.158) TCGA-2W-A8YY-01 11 121000715 121000715 C T TECTA Silent p.C912C 0.47 TCGA-2W-A8YY-01 11 121008167 121008167 C T TECTA Silent p.C993C 0.26 TCGA-2W-A8YY-01 11 121016793 121016793 C T TECTA Missense_Mutation p.T1358M 0.31 tolerated(0.19) benign(0.023) TCGA-2W-A8YY-01 11 121023624 121023624 C T TECTA Silent p.S1380S 0.34 TCGA-2W-A8YY-01 11 121466439 121466439 G A SORL1 Missense_Mutation p.G1493S 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 11 121490565 121490565 C T SORL1 Missense_Mutation p.T1943M 0.39 tolerated(0.14) benign(0.04) TCGA-2W-A8YY-01 11 12183773 12183773 C T MICAL2 Missense_Mutation p.T24M 0.44 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 121970474 121970474 C T MIR125B1 RNA 0.55 TCGA-2W-A8YY-01 11 12263915 12263915 C T MICAL2 Missense_Mutation p.P831L 0.41 deleterious_low_confidence(0.01) benign(0.049) TCGA-2W-A8YY-01 11 122681155 122681155 C A UBASH3B 3'UTR 0.27 TCGA-2W-A8YY-01 11 122738737 122738737 A G CRTAM Silent p.E327E 0.21 TCGA-2W-A8YY-01 11 122805177 122805177 T C C11orf63 Missense_Mutation p.V343A 0.39 tolerated(0.75) benign(0.228) TCGA-2W-A8YY-01 11 122805276 122805276 T C C11orf63 Missense_Mutation p.L376P 0.41 tolerated(0.36) benign(0.005) TCGA-2W-A8YY-01 11 122850126 122850126 G A BSX Missense_Mutation p.A101V 0.33 tolerated(0.05) benign(0.024) TCGA-2W-A8YY-01 11 122931921 122931921 T C HSPA8 Missense_Mutation p.T38A 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-2W-A8YY-01 11 12315858 12315858 G A MICALCL Missense_Mutation p.A294T 0.23 tolerated(0.35) benign(0.024) TCGA-2W-A8YY-01 11 123301683 123301683 C T AP000783.1 Silent p.A61A 0.37 TCGA-2W-A8YY-01 11 123524531 123524531 A G SCN3B 5'UTR 0.42 TCGA-2W-A8YY-01 11 123598852 123598852 A C ZNF202 Missense_Mutation p.V274G 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 11 123810752 123810752 C T OR4D5 Silent p.L143L 0.50 TCGA-2W-A8YY-01 11 123814126 123814126 G T OR6T1 Silent p.V140V 0.40 TCGA-2W-A8YY-01 11 123847485 123847485 C T OR10S1 Missense_Mutation p.R305Q 0.33 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 11 12399218 12399218 G A PARVA Silent p.S48S 0.42 TCGA-2W-A8YY-01 11 124121261 124121261 T C OR8G1 Intron 0.26 TCGA-2W-A8YY-01 11 124180548 124180548 C A OR8D1 Missense_Mutation p.V39L 0.35 tolerated(0.06) benign(0.005) TCGA-2W-A8YY-01 11 124413105 124413105 C T OR8B12 Missense_Mutation p.G149E 0.32 tolerated_low_confidence(0.08) possibly_damaging(0.58) TCGA-2W-A8YY-01 11 124440748 124440748 G A OR8A1 Missense_Mutation p.A262T 0.52 tolerated(0.53) benign(0.042) TCGA-2W-A8YY-01 11 124502153 124502153 C T TBRG1 3'UTR 0.23 TCGA-2W-A8YY-01 11 124507044 124507044 C T SIAE Missense_Mutation p.V459I 0.27 tolerated(0.33) benign(0.004) TCGA-2W-A8YY-01 11 124508580 124508580 C T SIAE Missense_Mutation p.R393H 0.37 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 11 124543553 124543553 C T SIAE Missense_Mutation p.A18T 0.43 deleterious(0.04) possibly_damaging(0.548) TCGA-2W-A8YY-01 11 124564351 124564351 G C SPA17 3'UTR 0.38 TCGA-2W-A8YY-01 11 124616451 124616451 G A NRGN 3'UTR 0.29 TCGA-2W-A8YY-01 11 124616774 124616774 C T NRGN 3'UTR 0.26 TCGA-2W-A8YY-01 11 124623638 124623638 G A ESAM Silent p.S359S 0.33 TCGA-2W-A8YY-01 11 124738876 124738876 G A ROBO3 Silent p.A113A 0.41 TCGA-2W-A8YY-01 11 124743977 124743977 G T ROBO3 Missense_Mutation p.G599V 0.54 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 124747997 124747997 G A ROBO3 Missense_Mutation p.A1051T 0.29 deleterious(0.04) possibly_damaging(0.636) TCGA-2W-A8YY-01 11 124767695 124767695 T C ROBO4 5'UTR 0.55 TCGA-2W-A8YY-01 11 124789221 124789221 A T HEPACAM 3'UTR 0.50 TCGA-2W-A8YY-01 11 124824660 124824660 G A CCDC15 Missense_Mutation p.R11Q 0.09 tolerated(0.12) benign(0.22) TCGA-2W-A8YY-01 11 124955487 124955487 C T SLC37A2 Missense_Mutation p.P448S 0.32 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 11 124967565 124967565 G A TMEM218 Silent p.L95L 0.29 TCGA-2W-A8YY-01 11 1252173 1252173 G A MUC5B Missense_Mutation p.R493Q 0.29 unknown(0) TCGA-2W-A8YY-01 11 125465900 125465900 T C STT3A Splice_Site p.X30_splice 0.35 TCGA-2W-A8YY-01 11 125476300 125476300 C A STT3A Nonsense_Mutation p.Y240* 0.30 TCGA-2W-A8YY-01 11 125478121 125478121 C T STT3A Missense_Mutation p.R300W 0.39 tolerated(0.19) probably_damaging(0.927) TCGA-2W-A8YY-01 11 125765145 125765145 C A PUS3 Missense_Mutation p.E306D 0.24 deleterious(0.03) benign(0.04) TCGA-2W-A8YY-01 11 125765545 125765545 C T PUS3 Missense_Mutation p.R173H 0.46 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 11 1257792 1257792 G T MUC5B Missense_Mutation p.K1019N 0.45 unknown(0) TCGA-2W-A8YY-01 11 125851121 125851121 G A CDON Silent p.H1033H 0.21 TCGA-2W-A8YY-01 11 125864229 125864229 C T CDON Missense_Mutation p.R867Q 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 125864792 125864792 C T CDON Missense_Mutation p.D840N 0.28 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 11 125891159 125891159 C T CDON Silent p.A111A 0.28 TCGA-2W-A8YY-01 11 126126634 126126634 G A FAM118B Missense_Mutation p.R290Q 0.44 tolerated(0.89) possibly_damaging(0.764) TCGA-2W-A8YY-01 11 126133463 126133463 G A SRPR 3'UTR 0.36 TCGA-2W-A8YY-01 11 126137205 126137205 G A SRPR Missense_Mutation p.R131C 0.42 deleterious(0) probably_damaging(0.93) TCGA-2W-A8YY-01 11 126137453 126137453 C T SRPR Missense_Mutation p.R119Q 0.25 tolerated(0.33) benign(0.002) TCGA-2W-A8YY-01 11 126143249 126143249 G A FOXRED1 Missense_Mutation p.D146N 0.39 tolerated(0.85) benign(0.008) TCGA-2W-A8YY-01 11 126147335 126147335 G T FOXRED1 Missense_Mutation p.Q404H 0.34 deleterious(0.04) benign(0.033) TCGA-2W-A8YY-01 11 126283467 126283467 G A ST3GAL4 Missense_Mutation p.G280D 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 126284330 126284330 C T ST3GAL4 3'UTR 0.29 TCGA-2W-A8YY-01 11 126306743 126306743 G A KIRREL3 Silent p.F505F 0.46 TCGA-2W-A8YY-01 11 1263382 1263382 G A MUC5B Missense_Mutation p.A1758T 0.58 unknown(0) TCGA-2W-A8YY-01 11 126343242 126343242 G A KIRREL3 Nonsense_Mutation p.R185* 0.09 TCGA-2W-A8YY-01 11 1265019 1265019 G A MUC5B Silent p.S2303S 0.27 TCGA-2W-A8YY-01 11 1265184 1265184 C T MUC5B Silent p.L2358L 0.28 TCGA-2W-A8YY-01 11 1265608 1265608 G A MUC5B Missense_Mutation p.A2500T 0.36 unknown(0) TCGA-2W-A8YY-01 11 1266189 1266189 G A MUC5B Silent p.T2693T 0.37 TCGA-2W-A8YY-01 11 126870433 126870433 G T KIRREL3 5'UTR 0.57 TCGA-2W-A8YY-01 11 1270371 1270371 G A MUC5B Silent p.P4087P 0.34 TCGA-2W-A8YY-01 11 1270637 1270637 C T MUC5B Missense_Mutation p.A4176V 0.22 unknown(0) TCGA-2W-A8YY-01 11 1271681 1271681 C T MUC5B Missense_Mutation p.A4524V 0.22 unknown(0) TCGA-2W-A8YY-01 11 1272168 1272168 G A MUC5B Silent p.T4686T 0.32 TCGA-2W-A8YY-01 11 1275496 1275496 G A MUC5B Missense_Mutation p.R5131H 0.41 unknown(0) TCGA-2W-A8YY-01 11 128638067 128638067 C T FLI1 Silent p.G95G 0.40 TCGA-2W-A8YY-01 11 128681664 128681664 C T FLI1 3'UTR 0.31 TCGA-2W-A8YY-01 11 128708981 128708981 C T KCNJ1 3'UTR 0.13 TCGA-2W-A8YY-01 11 128773319 128773319 C T C11orf45 Missense_Mutation p.R75K 0.44 deleterious_low_confidence(0) benign(0.14) TCGA-2W-A8YY-01 11 128840012 128840012 G T ARHGAP32 Missense_Mutation p.P1685H 0.40 tolerated(0.09) possibly_damaging(0.606) TCGA-2W-A8YY-01 11 128842433 128842433 G A ARHGAP32 Missense_Mutation p.P1309L 0.18 tolerated_low_confidence(0.09) probably_damaging(0.999) TCGA-2W-A8YY-01 11 128843919 128843919 G A ARHGAP32 Intron 0.38 TCGA-2W-A8YY-01 11 12951760 12951760 C T TEAD1 Nonsense_Mutation p.R352* 0.37 TCGA-2W-A8YY-01 11 129744182 129744182 G T NFRKB Missense_Mutation p.P727H 0.09 deleterious(0.02) unknown(0) TCGA-2W-A8YY-01 11 129752425 129752425 C T NFRKB Missense_Mutation p.E360K 0.38 tolerated(0.07) unknown(0) TCGA-2W-A8YY-01 11 129754643 129754643 C T NFRKB Missense_Mutation p.A272T 0.29 tolerated(0.29) unknown(0) TCGA-2W-A8YY-01 11 129756337 129756337 C T NFRKB Missense_Mutation p.G127R 0.33 deleterious(0) unknown(0) TCGA-2W-A8YY-01 11 129795019 129795019 G A PRDM10 Missense_Mutation p.R550C 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 11 129805068 129805068 C T PRDM10 Missense_Mutation p.R362H 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 11 129980558 129980558 T C APLP2 Splice_Site p.X135_splice 0.32 TCGA-2W-A8YY-01 11 129993558 129993558 G A APLP2 Missense_Mutation p.R325H 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 130059748 130059748 G A ST14 Silent p.A185A 0.45 TCGA-2W-A8YY-01 11 130278438 130278438 G A ADAMTS8 Missense_Mutation p.R674W 0.30 deleterious(0) possibly_damaging(0.462) TCGA-2W-A8YY-01 11 130340895 130340895 G A ADAMTS15 Missense_Mutation p.V601M 0.46 tolerated(0.05) benign(0.144) TCGA-2W-A8YY-01 11 130779988 130779988 C A SNX19 Missense_Mutation p.Q653H 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 130785251 130785251 G A SNX19 Missense_Mutation p.A195V 0.40 tolerated(0.72) benign(0.009) TCGA-2W-A8YY-01 11 1311593 1311593 C T TOLLIP Missense_Mutation p.C77Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 132180083 132180083 G T NTM Missense_Mutation p.A247S 0.32 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 11 132206572 132206572 T G NTM 3'Flank 0.41 TCGA-2W-A8YY-01 11 133402366 133402366 C T OPCML 5'UTR 0.43 TCGA-2W-A8YY-01 11 133794715 133794715 C A IGSF9B Missense_Mutation p.D707Y 0.36 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 11 133801565 133801565 C T IGSF9B Silent p.A412A 0.53 TCGA-2W-A8YY-01 11 134073941 134073941 C T NCAPD3 Silent p.K405K 0.26 TCGA-2W-A8YY-01 11 134113185 134113185 C T VPS26B Nonsense_Mutation p.R240* 0.39 TCGA-2W-A8YY-01 11 134115393 134115393 C T VPS26B Missense_Mutation p.A307V 0.47 tolerated(0.19) benign(0.042) TCGA-2W-A8YY-01 11 134116625 134116625 C T VPS26B 3'UTR 0.45 TCGA-2W-A8YY-01 11 134127134 134127134 C T ACAD8 Silent p.A121A 0.42 TCGA-2W-A8YY-01 11 134239724 134239724 C T GLB1L2 Silent p.A351A 0.18 TCGA-2W-A8YY-01 11 134250475 134250475 C T B3GAT1 3'Flank 0.38 TCGA-2W-A8YY-01 11 13438712 13438712 G A BTBD10 Missense_Mutation p.A227V 0.26 tolerated(0.08) possibly_damaging(0.742) TCGA-2W-A8YY-01 11 14482815 14482815 C T COPB1 Missense_Mutation p.D825N 0.43 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 11 14515775 14515775 A G COPB1 Missense_Mutation p.V101A 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 14520476 14520476 G A COPB1 5'UTR 0.30 TCGA-2W-A8YY-01 11 1478272 1478272 G A BRSK2 Intron 0.12 TCGA-2W-A8YY-01 11 1491447 1491447 G A MOB2 Silent p.A254A 0.16 TCGA-2W-A8YY-01 11 1491619 1491619 G A MOB2 Missense_Mutation p.T197M 0.45 tolerated(0.2) probably_damaging(0.963) TCGA-2W-A8YY-01 11 14989296 14989296 G A CALCA 3'Flank 0.48 TCGA-2W-A8YY-01 11 14992735 14992735 C T CALCA Missense_Mutation p.G2S 0.35 tolerated(0.16) benign(0.138) TCGA-2W-A8YY-01 11 15199918 15199918 C T INSC Silent p.C215C 0.31 TCGA-2W-A8YY-01 11 15243146 15243146 C A INSC Missense_Mutation p.L362I 0.41 tolerated(0.15) possibly_damaging(0.456) TCGA-2W-A8YY-01 11 1577565 1577565 C T DUSP8 3'UTR 0.47 TCGA-2W-A8YY-01 11 1577953 1577953 C T DUSP8 Missense_Mutation p.R558Q 0.33 tolerated(0.07) benign(0.036) TCGA-2W-A8YY-01 11 15994229 15994229 G A SOX6 3'UTR 0.34 TCGA-2W-A8YY-01 11 1629388 1629388 G T KRTAP5-3 Silent p.G76G 0.25 TCGA-2W-A8YY-01 11 1642812 1642812 C A KRTAP5-4 Missense_Mutation p.G171V 0.32 tolerated_low_confidence(0.44) unknown(0) TCGA-2W-A8YY-01 11 1643177 1643177 G A KRTAP5-4 Silent p.C49C 0.43 TCGA-2W-A8YY-01 11 16774392 16774392 G T C11orf58 Missense_Mutation p.S90I 0.26 tolerated(0.16) probably_damaging(0.981) TCGA-2W-A8YY-01 11 16774431 16774431 G A C11orf58 Missense_Mutation p.G103D 0.20 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 16809825 16809825 G A PLEKHA7 3'UTR 0.29 TCGA-2W-A8YY-01 11 16811422 16811422 A G PLEKHA7 Missense_Mutation p.L1019P 0.34 tolerated(0.18) probably_damaging(0.934) TCGA-2W-A8YY-01 11 16848118 16848118 G A PLEKHA7 Missense_Mutation p.R298W 0.20 tolerated(0.08) benign(0.002) TCGA-2W-A8YY-01 11 17124238 17124238 T C PIK3C2A Silent p.G1274G 0.39 TCGA-2W-A8YY-01 11 17158101 17158101 C T PIK3C2A Silent p.E592E 0.41 TCGA-2W-A8YY-01 11 1718655 1718655 T C KRTAP5-6 Silent p.C60C 0.11 TCGA-2W-A8YY-01 11 17417420 17417420 G A ABCC8 Missense_Mutation p.R1393C 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 17426184 17426184 G A ABCC8 Silent p.R1144R 0.55 TCGA-2W-A8YY-01 11 17482153 17482153 C T ABCC8 Missense_Mutation p.R298H 0.39 deleterious(0.02) possibly_damaging(0.508) TCGA-2W-A8YY-01 11 17522604 17522604 G A USH1C Missense_Mutation p.R792W 0.50 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-2W-A8YY-01 11 17542910 17542910 G A USH1C Silent p.Y356Y 0.27 TCGA-2W-A8YY-01 11 17547986 17547986 G A USH1C Silent p.G194G 0.38 TCGA-2W-A8YY-01 11 17565827 17565827 G A USH1C Missense_Mutation p.R10W 0.38 deleterious(0) possibly_damaging(0.482) TCGA-2W-A8YY-01 11 17618396 17618396 A G OTOG Splice_Site p.X1188_splice 0.18 TCGA-2W-A8YY-01 11 17629961 17629961 G A OTOG Splice_Site p.X1437_splice 0.41 TCGA-2W-A8YY-01 11 17631372 17631372 C A OTOG Missense_Mutation p.L1521M 0.42 benign(0.08) TCGA-2W-A8YY-01 11 17633809 17633809 G A OTOG Missense_Mutation p.R2087H 0.31 benign(0.003) TCGA-2W-A8YY-01 11 1769134 1769134 C T RP11-295K3.1 Silent p.A300A 0.41 TCGA-2W-A8YY-01 11 1774474 1774474 G A CTSD 3'UTR 0.24 TCGA-2W-A8YY-01 11 17757991 17757991 G A KCNC1 Missense_Mutation p.E148K 0.51 tolerated(0.07) benign(0.08) TCGA-2W-A8YY-01 11 17793947 17793947 G A KCNC1 Missense_Mutation p.V436M 0.18 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 17803215 17803215 A G KCNC1 Splice_Site p.X565_splice 0.29 TCGA-2W-A8YY-01 11 18103046 18103046 G A SAAL1 Missense_Mutation p.T415M 0.41 tolerated(0.07) benign(0.033) TCGA-2W-A8YY-01 11 18158872 18158872 G A MRGPRX3 Silent p.A41A 0.33 TCGA-2W-A8YY-01 11 18158912 18158912 C T MRGPRX3 Missense_Mutation p.R55C 0.17 tolerated(0.24) benign(0.047) TCGA-2W-A8YY-01 11 18313474 18313474 G A HPS5 Missense_Mutation p.A652V 0.33 tolerated(0.06) benign(0.02) TCGA-2W-A8YY-01 11 18388051 18388051 G A GTF2H1 3'UTR 0.28 TCGA-2W-A8YY-01 11 18388061 18388061 C T GTF2H1 3'UTR 0.40 TCGA-2W-A8YY-01 11 18388148 18388148 G A GTF2H1 3'UTR 0.31 TCGA-2W-A8YY-01 11 18388190 18388190 C T GTF2H1 3'UTR 0.29 TCGA-2W-A8YY-01 11 18418066 18418066 C T LDHA 5'UTR 0.24 TCGA-2W-A8YY-01 11 18478306 18478306 G A LDHAL6A Missense_Mutation p.G27R 0.51 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 11 1857312 1857312 A G SYT8 Intron 0.38 TCGA-2W-A8YY-01 11 18637412 18637412 C T SPTY2D1 Missense_Mutation p.A137T 0.49 tolerated(1) possibly_damaging(0.499) TCGA-2W-A8YY-01 11 18725867 18725867 G A TMEM86A 3'UTR 0.33 TCGA-2W-A8YY-01 11 18737264 18737264 C A IGSF22 Splice_Site p.X416_splice 0.48 TCGA-2W-A8YY-01 11 18745800 18745800 G A IGSF22 5'UTR 0.28 TCGA-2W-A8YY-01 11 1887709 1887709 C T LSP1 Missense_Mutation p.A2V 0.27 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 11 18955772 18955772 A - MRGPRX1 Frame_Shift_Del p.L187Yfs*13 0.23 TCGA-2W-A8YY-01 11 1902717 1902717 G A LSP1 Missense_Mutation p.D211N 0.50 tolerated_low_confidence(0.18) possibly_damaging(0.797) TCGA-2W-A8YY-01 11 1905727 1905727 C A LSP1 Intron 0.31 TCGA-2W-A8YY-01 11 19170829 19170829 T C ZDHHC13 Missense_Mutation p.V157A 0.40 tolerated(0.45) benign(0.326) TCGA-2W-A8YY-01 11 197365 197365 G A ODF3 Missense_Mutation p.A21T 0.45 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 11 1974070 1974070 C T MRPL23 Silent p.V94V 0.41 TCGA-2W-A8YY-01 11 199380 199380 C T ODF3 Silent p.P182P 0.43 TCGA-2W-A8YY-01 11 20070671 20070671 G A NAV2 Missense_Mutation p.A1457T 0.45 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 11 20077420 20077420 G A NAV2 Missense_Mutation p.R1606H 0.24 tolerated(0.34) probably_damaging(0.997) TCGA-2W-A8YY-01 11 20089886 20089886 G A NAV2 Missense_Mutation p.R1698Q 0.28 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 11 20140274 20140274 G A NAV2 3'Flank 0.24 TCGA-2W-A8YY-01 11 20178095 20178095 G A DBX1 Missense_Mutation p.R272C 0.28 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 11 205555 205555 C A BET1L Intron 0.45 TCGA-2W-A8YY-01 11 20621127 20621127 T C SLC6A5 5'UTR 0.37 TCGA-2W-A8YY-01 11 20805312 20805312 G A NELL1 Missense_Mutation p.A91T 0.34 deleterious(0.04) possibly_damaging(0.721) TCGA-2W-A8YY-01 11 20939761 20939761 C T NELL1 Missense_Mutation p.P213S 0.38 deleterious(0.02) possibly_damaging(0.893) TCGA-2W-A8YY-01 11 21392457 21392457 C A NELL1 Silent p.V536V 0.47 TCGA-2W-A8YY-01 11 2156625 2156625 G A IGF2 Silent p.F99F 0.33 TCGA-2W-A8YY-01 11 2167566 2167566 C T INS-IGF2 3'Flank 0.09 TCGA-2W-A8YY-01 11 2181076 2181076 C T INS 3'UTR 0.45 TCGA-2W-A8YY-01 11 2190978 2190978 C T TH Missense_Mutation p.A103T 0.48 tolerated(0.31) benign(0.002) TCGA-2W-A8YY-01 11 22364835 22364835 C T SLC17A6 Missense_Mutation p.H128Y 0.47 deleterious(0.01) possibly_damaging(0.864) TCGA-2W-A8YY-01 11 22399158 22399158 A G SLC17A6 Missense_Mutation p.T541A 0.39 tolerated(0.79) benign(0.001) TCGA-2W-A8YY-01 11 224091 224091 C A SIRT3 Missense_Mutation p.G319V 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 22833389 22833389 G A GAS2 Missense_Mutation p.E257K 0.14 deleterious(0) possibly_damaging(0.867) TCGA-2W-A8YY-01 11 2292072 2292072 C T ASCL2 5'UTR 0.09 TCGA-2W-A8YY-01 11 2329989 2329989 G A TSPAN32 Silent p.A101A 0.40 TCGA-2W-A8YY-01 11 2337527 2337527 C T TSPAN32 Silent p.I204I 0.44 TCGA-2W-A8YY-01 11 24936062 24936062 G A LUZP2 Missense_Mutation p.G167E 0.54 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 2591864 2591864 G A KCNQ1 Missense_Mutation p.V162M 0.57 deleterious(0) possibly_damaging(0.863) TCGA-2W-A8YY-01 11 27017289 27017289 C A FIBIN 3'UTR 0.31 TCGA-2W-A8YY-01 11 27387708 27387708 G A LGR4 3'UTR 0.40 TCGA-2W-A8YY-01 11 27387722 27387722 C T LGR4 3'UTR 0.24 TCGA-2W-A8YY-01 11 27406919 27406919 C T LGR4 Silent p.T166T 0.10 TCGA-2W-A8YY-01 11 27680766 27680766 T C BDNF Intron 0.37 TCGA-2W-A8YY-01 11 289927 289927 C T ATHL1 Silent p.H37H 0.36 TCGA-2W-A8YY-01 11 2924524 2924524 G A SLC22A18 5'UTR 0.11 TCGA-2W-A8YY-01 11 2943693 2943693 T C SLC22A18 Missense_Mutation p.C332R 0.43 deleterious(0) probably_damaging(0.972) TCGA-2W-A8YY-01 11 299403 299403 G A IFITM5 Missense_Mutation p.H30Y 0.33 deleterious(0.03) benign(0.001) TCGA-2W-A8YY-01 11 299404 299404 C T IFITM5 Silent p.P29P 0.37 TCGA-2W-A8YY-01 11 2997281 2997281 G T NAP1L4 Missense_Mutation p.P49H 0.15 deleterious(0.04) benign(0.336) TCGA-2W-A8YY-01 11 3041463 3041463 C T CARS Missense_Mutation p.C418Y 0.09 deleterious(0) possibly_damaging(0.722) TCGA-2W-A8YY-01 11 3041561 3041561 A G CARS Silent p.G385G 0.46 TCGA-2W-A8YY-01 11 30432473 30432473 T G MPPED2 3'UTR 0.35 TCGA-2W-A8YY-01 11 30902756 30902756 G A DCDC1 Nonsense_Mutation p.R1725* 0.25 TCGA-2W-A8YY-01 11 30946923 30946923 G A DCDC1 Missense_Mutation p.A977V 0.44 deleterious(0) possibly_damaging(0.682) TCGA-2W-A8YY-01 11 31113041 31113041 G A DCDC1 Silent p.S712S 0.41 TCGA-2W-A8YY-01 11 3114271 3114271 T C OSBPL5 Missense_Mutation p.H653R 0.54 tolerated(0.14) benign(0.029) TCGA-2W-A8YY-01 11 3115507 3115507 G A OSBPL5 Missense_Mutation p.A560V 0.28 deleterious(0) benign(0.275) TCGA-2W-A8YY-01 11 31329364 31329364 C T DCDC1 Missense_Mutation p.A86T 0.31 tolerated(0.17) benign(0.057) TCGA-2W-A8YY-01 11 31805016 31805016 C T ELP4 Missense_Mutation p.R407W 0.49 tolerated(0.06) possibly_damaging(0.72) TCGA-2W-A8YY-01 11 31805146 31805146 T - ELP4 3'UTR 0.33 TCGA-2W-A8YY-01 11 31811092 31811092 C T PAX6 3'UTR 0.48 TCGA-2W-A8YY-01 11 319719 319719 G A IFITM3 3'UTR 0.09 TCGA-2W-A8YY-01 11 32125943 32125943 G A RCN1 Silent p.E307E 0.49 TCGA-2W-A8YY-01 11 32125983 32125983 G A RCN1 Missense_Mutation p.G321R 0.15 deleterious(0) probably_damaging(0.928) TCGA-2W-A8YY-01 11 32452214 32452214 G A WT1 Intron 0.39 TCGA-2W-A8YY-01 11 32616544 32616544 C T EIF3M Silent p.G234G 0.38 TCGA-2W-A8YY-01 11 32705007 32705007 A G CCDC73 Intron 0.25 TCGA-2W-A8YY-01 11 32955087 32955087 A G QSER1 Silent p.E632E 0.33 TCGA-2W-A8YY-01 11 32955935 32955935 A G QSER1 Missense_Mutation p.N915S 0.73 tolerated(0.48) benign(0.009) TCGA-2W-A8YY-01 11 32979607 32979607 C A QSER1 Silent p.I1519I 0.32 TCGA-2W-A8YY-01 11 32998358 32998358 A C QSER1 3'UTR 0.71 TCGA-2W-A8YY-01 11 33079519 33079519 G T TCP11L1 Nonsense_Mutation p.E158* 0.41 TCGA-2W-A8YY-01 11 33309057 33309057 G T HIPK3 Missense_Mutation p.R366I 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 33362656 33362656 G A HIPK3 Missense_Mutation p.G586R 0.34 tolerated(0.25) possibly_damaging(0.874) TCGA-2W-A8YY-01 11 33375287 33375287 G A HIPK3 3'UTR 0.33 TCGA-2W-A8YY-01 11 33565078 33565078 G A KIAA1549L Missense_Mutation p.D360N 0.09 tolerated_low_confidence(0.31) benign(0.002) TCGA-2W-A8YY-01 11 33612914 33612914 C T KIAA1549L Silent p.V1269V 0.32 TCGA-2W-A8YY-01 11 33667426 33667426 C T KIAA1549L Silent p.G1571G 0.47 TCGA-2W-A8YY-01 11 33795999 33795999 C T FBXO3 Silent p.S15S 0.36 TCGA-2W-A8YY-01 11 3380156 3380156 T G ZNF195 3'UTR 0.36 TCGA-2W-A8YY-01 11 33880825 33880825 C A LMO2 3'UTR 0.28 TCGA-2W-A8YY-01 11 33891527 33891527 C A LMO2 5'UTR 0.11 TCGA-2W-A8YY-01 11 34121641 34121641 G A CAPRIN1 3'UTR 0.41 TCGA-2W-A8YY-01 11 34163359 34163359 G A NAT10 Missense_Mutation p.D936N 0.11 deleterious(0.03) benign(0.361) TCGA-2W-A8YY-01 11 34473659 34473659 C T CAT Missense_Mutation p.P129S 0.24 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 34680407 34680407 C T EHF Missense_Mutation p.R300C 0.46 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 34904168 34904168 T C APIP 3'UTR 0.21 TCGA-2W-A8YY-01 11 35274325 35274325 C A SLC1A2 3'UTR 0.50 TCGA-2W-A8YY-01 11 35453779 35453779 T C PAMR1 3'UTR 0.23 TCGA-2W-A8YY-01 11 35454215 35454215 G A PAMR1 Missense_Mutation p.R635C 0.36 deleterious(0) possibly_damaging(0.884) TCGA-2W-A8YY-01 11 35828123 35828123 C A TRIM44 3'UTR 0.35 TCGA-2W-A8YY-01 11 36292976 36292976 C T COMMD9 3'Flank 0.50 TCGA-2W-A8YY-01 11 36467869 36467869 G A PRR5L Missense_Mutation p.R155H 0.29 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 3647729 3647729 C T TRPC2 RNA 0.52 TCGA-2W-A8YY-01 11 36483898 36483898 G A PRR5L Missense_Mutation p.R240Q 0.39 deleterious(0.03) possibly_damaging(0.781) TCGA-2W-A8YY-01 11 36511792 36511792 G A TRAF6 Silent p.L389L 0.45 TCGA-2W-A8YY-01 11 36597804 36597804 T A RAG1 Missense_Mutation p.C984S 0.26 tolerated_low_confidence(0.25) benign(0.029) TCGA-2W-A8YY-01 11 3681533 3681533 G A ART1 Missense_Mutation p.A262T 0.40 tolerated(0.48) benign(0.004) TCGA-2W-A8YY-01 11 3716707 3716707 C T NUP98 Missense_Mutation p.R1380H 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 11 3726519 3726519 C T NUP98 Missense_Mutation p.R998H 0.52 tolerated(0.49) benign(0.006) TCGA-2W-A8YY-01 11 40135896 40135897 - T LRRC4C 3'UTR 0.15 TCGA-2W-A8YY-01 11 405844 405844 G A SIGIRR 3'UTR 0.23 TCGA-2W-A8YY-01 11 4139638 4139638 G A RRM1 Missense_Mutation p.G247R 0.09 deleterious_low_confidence(0) possibly_damaging(0.704) TCGA-2W-A8YY-01 11 428756 428756 C T ANO9 Missense_Mutation p.R329H 0.28 tolerated(0.06) benign(0.175) TCGA-2W-A8YY-01 11 430322 430322 C T ANO9 Silent p.T207T 0.26 TCGA-2W-A8YY-01 11 432001 432001 C T ANO9 Missense_Mutation p.G135D 0.46 tolerated(0.23) benign(0.172) TCGA-2W-A8YY-01 11 43345004 43345004 G T API5 Nonsense_Mutation p.E190* 0.31 TCGA-2W-A8YY-01 11 43365287 43365287 T G API5 3'Flank 0.26 TCGA-2W-A8YY-01 11 43365893 43365893 T G API5 3'Flank 0.29 TCGA-2W-A8YY-01 11 43471750 43471750 C T TTC17 Nonsense_Mutation p.R969* 0.51 TCGA-2W-A8YY-01 11 43472747 43472747 G A TTC17 Missense_Mutation p.G988S 0.41 tolerated(0.06) possibly_damaging(0.566) TCGA-2W-A8YY-01 11 43511863 43511863 C T TTC17 Silent p.I1035I 0.30 TCGA-2W-A8YY-01 11 43515440 43515440 C T TTC17 Missense_Mutation p.R1138W 0.15 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-2W-A8YY-01 11 43602965 43602965 C T MIR129-2 RNA 0.38 TCGA-2W-A8YY-01 11 43923158 43923158 G A ALKBH3 Silent p.E184E 0.39 TCGA-2W-A8YY-01 11 44077870 44077870 A G ACCSL Missense_Mutation p.N441D 0.48 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 11 44079868 44079868 A T ACCSL Missense_Mutation p.E443D 0.50 tolerated(0.94) benign(0.057) TCGA-2W-A8YY-01 11 44104718 44104718 G A ACCS Splice_Site p.X371_splice 0.56 TCGA-2W-A8YY-01 11 44228434 44228434 C T EXT2 Silent p.I562I 0.40 TCGA-2W-A8YY-01 11 44331156 44331156 G A ALX4 Missense_Mutation p.P153S 0.41 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 11 44636880 44636880 G A CD82 Missense_Mutation p.R132H 0.46 tolerated(0.31) benign(0.005) TCGA-2W-A8YY-01 11 44959881 44959881 C T TP53I11 Silent p.A2A 0.41 TCGA-2W-A8YY-01 11 4510855 4510855 C T OR52K1 Missense_Mutation p.T242I 0.29 deleterious(0) benign(0.247) TCGA-2W-A8YY-01 11 45241218 45241218 G A PRDM11 Missense_Mutation p.G218R 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-2W-A8YY-01 11 45246174 45246174 G T PRDM11 Missense_Mutation p.E383D 0.41 tolerated_low_confidence(0.23) probably_damaging(0.986) TCGA-2W-A8YY-01 11 45246346 45246346 G A PRDM11 Missense_Mutation p.V441I 0.30 tolerated_low_confidence(0.21) benign(0.006) TCGA-2W-A8YY-01 11 45265871 45265871 C T SYT13 Missense_Mutation p.R338Q 0.39 tolerated(0.53) benign(0.001) TCGA-2W-A8YY-01 11 45267974 45267974 C T SYT13 Silent p.K312K 0.40 TCGA-2W-A8YY-01 11 45671225 45671225 C T CHST1 3'UTR 0.29 TCGA-2W-A8YY-01 11 45671848 45671848 C T CHST1 Missense_Mutation p.R209H 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 45832456 45832456 C T SLC35C1 Missense_Mutation p.A222V 0.33 tolerated(0.53) benign(0.005) TCGA-2W-A8YY-01 11 45891311 45891311 C T CRY2 Silent p.A400A 0.56 TCGA-2W-A8YY-01 11 45902999 45902999 G A CRY2 3'UTR 0.27 TCGA-2W-A8YY-01 11 45927520 45927520 G T MAPK8IP1 3'UTR 0.29 TCGA-2W-A8YY-01 11 45947661 45947661 C T GYLTL1B Missense_Mutation p.R281W 0.41 deleterious(0.01) possibly_damaging(0.901) TCGA-2W-A8YY-01 11 45948904 45948904 G A GYLTL1B Missense_Mutation p.G455D 0.22 deleterious(0) probably_damaging(0.944) TCGA-2W-A8YY-01 11 45949527 45949527 C T GYLTL1B Missense_Mutation p.P554L 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 46389578 46389578 C T DGKZ Silent p.C319C 0.29 TCGA-2W-A8YY-01 11 46400643 46400643 C T DGKZ Missense_Mutation p.R1029C 0.46 deleterious(0) benign(0.177) TCGA-2W-A8YY-01 11 46689338 46689338 C T ATG13 Silent p.T384T 0.23 TCGA-2W-A8YY-01 11 46694333 46694333 A G ATG13 3'Flank 0.39 TCGA-2W-A8YY-01 11 46727257 46727257 C T ZNF408 Silent p.P669P 0.28 TCGA-2W-A8YY-01 11 4674354 4674354 G A OR51E1 Missense_Mutation p.V200I 0.16 tolerated(1) benign(0.028) TCGA-2W-A8YY-01 11 46751085 46751085 G A F2 Missense_Mutation p.R543H 0.44 deleterious(0.03) benign(0.067) TCGA-2W-A8YY-01 11 4675795 4675795 C T OR51E1 3'UTR 0.32 TCGA-2W-A8YY-01 11 46774920 46774920 C T CKAP5 Missense_Mutation p.R1666H 0.33 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 11 46802022 46802022 C A CKAP5 Missense_Mutation p.A755S 0.31 tolerated(0.49) benign(0.028) TCGA-2W-A8YY-01 11 46907941 46907941 C T LRP4 Missense_Mutation p.V787M 0.09 deleterious(0.03) benign(0.104) TCGA-2W-A8YY-01 11 4701863 4701863 C A OR51E2 3'UTR 0.42 TCGA-2W-A8YY-01 11 4703319 4703319 A G OR51E2 Missense_Mutation p.V208A 0.51 deleterious(0) benign(0.16) TCGA-2W-A8YY-01 11 47185770 47185770 G A C11orf49 3'Flank 0.20 TCGA-2W-A8YY-01 11 47204064 47204064 C T PACSIN3 Missense_Mutation p.R34Q 0.26 tolerated(0.06) probably_damaging(0.945) TCGA-2W-A8YY-01 11 47204094 47204094 C T PACSIN3 Missense_Mutation p.R24H 0.38 deleterious(0.01) possibly_damaging(0.542) TCGA-2W-A8YY-01 11 47256193 47256193 C T DDB2 Silent p.N224N 0.38 TCGA-2W-A8YY-01 11 47264370 47264370 G A ACP2 Missense_Mutation p.R348C 0.29 tolerated(0.18) possibly_damaging(0.556) TCGA-2W-A8YY-01 11 47280612 47280612 G A NR1H3 5'UTR 0.45 TCGA-2W-A8YY-01 11 47297476 47297476 G A MADD Missense_Mutation p.G229E 0.35 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 11 47304435 47304435 C T MADD Missense_Mutation p.R593C 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-2W-A8YY-01 11 47330546 47330546 C T MADD Missense_Mutation p.S1295F 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-2W-A8YY-01 11 47367763 47367763 C T MYBPC3 Missense_Mutation p.S362N 0.31 deleterious(0) probably_damaging(0.911) TCGA-2W-A8YY-01 11 47381509 47381509 G A SPI1 Silent p.S76S 0.48 TCGA-2W-A8YY-01 11 47493893 47493893 G A CELF1 Silent p.D476D 0.35 TCGA-2W-A8YY-01 11 47600662 47600662 G A NDUFS3 Missense_Mutation p.A7T 0.18 tolerated(0.6) benign(0.001) TCGA-2W-A8YY-01 11 47753739 47753739 G A FNBP4 Intron 0.43 TCGA-2W-A8YY-01 11 47774586 47774586 T C FNBP4 Silent p.P173P 0.32 TCGA-2W-A8YY-01 11 47776176 47776176 G A FNBP4 Silent p.D118D 0.40 TCGA-2W-A8YY-01 11 47861508 47861508 G T NUP160 Missense_Mutation p.P212H 0.11 tolerated(0.17) possibly_damaging(0.895) TCGA-2W-A8YY-01 11 47861846 47861846 T C NUP160 Intron 0.12 TCGA-2W-A8YY-01 11 47861860 47861860 G A NUP160 Intron 0.30 TCGA-2W-A8YY-01 11 48157769 48157769 G A PTPRJ Silent p.P598P 0.39 TCGA-2W-A8YY-01 11 48161228 48161228 G A PTPRJ Silent p.T781T 0.59 TCGA-2W-A8YY-01 11 48185933 48185933 G A PTPRJ Missense_Mutation p.A1241T 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 4824767 4824767 G A OR52R1 Missense_Mutation p.L282F 0.47 tolerated(0.05) benign(0.068) TCGA-2W-A8YY-01 11 4825522 4825522 A C OR52R1 Missense_Mutation p.I30S 0.43 deleterious(0) possibly_damaging(0.883) TCGA-2W-A8YY-01 11 48346581 48346581 T C OR4C3 Missense_Mutation p.I30T 0.32 tolerated(0.56) benign(0.006) TCGA-2W-A8YY-01 11 48511042 48511042 A C OR4A47 Missense_Mutation p.K233T 0.42 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-2W-A8YY-01 11 489419 489419 G A PTDSS2 Missense_Mutation p.A292T 0.32 tolerated(0.18) benign(0.311) TCGA-2W-A8YY-01 11 49197480 49197480 C T FOLH1 Missense_Mutation p.S317N 0.10 tolerated(0.37) benign(0) TCGA-2W-A8YY-01 11 49228383 49228383 T C FOLH1 Intron 0.28 TCGA-2W-A8YY-01 11 4976118 4976118 G A OR51A2 Missense_Mutation p.L276F 0.26 tolerated(0.07) benign(0.443) TCGA-2W-A8YY-01 11 49830120 49830120 G T RP11-707M1.1 RNA 0.33 TCGA-2W-A8YY-01 11 49974516 49974516 C T OR4C13 Missense_Mutation p.T181I 0.45 deleterious_low_confidence(0.01) benign(0.009) TCGA-2W-A8YY-01 11 50003649 50003649 T C OR4C12 Missense_Mutation p.Y130C 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 500566 500566 G A RNH1 Missense_Mutation p.R64C 0.34 tolerated(0.11) benign(0.004) TCGA-2W-A8YY-01 11 5013462 5013462 A G MMP26 Missense_Mutation p.D259G 0.44 tolerated_low_confidence(0.23) benign(0.001) TCGA-2W-A8YY-01 11 5020769 5020769 T C OR51L1 Missense_Mutation p.V186A 0.39 tolerated(0.14) benign(0.422) TCGA-2W-A8YY-01 11 5068339 5068339 G A OR52J3 Missense_Mutation p.R195H 0.38 tolerated(0.1) benign(0.02) TCGA-2W-A8YY-01 11 51411601 51411601 A G OR4A5 Silent p.D265D 0.45 TCGA-2W-A8YY-01 11 51411866 51411866 T C OR4A5 Missense_Mutation p.D177G 0.29 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-2W-A8YY-01 11 5142650 5142650 G T OR52A4 RNA 0.38 TCGA-2W-A8YY-01 11 5221088 5221088 G A OR51V1 Silent p.A281A 0.35 TCGA-2W-A8YY-01 11 5373215 5373215 C T OR51B6 Missense_Mutation p.R160C 0.38 tolerated(0.18) benign(0.013) TCGA-2W-A8YY-01 11 5475314 5475314 G A OR51I2 Missense_Mutation p.G199E 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 550113 550113 A G LRRC56 Silent p.P155P 0.26 TCGA-2W-A8YY-01 11 550195 550195 C A LRRC56 Missense_Mutation p.L183M 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 55033109 55033109 G A TRIM48 Missense_Mutation p.E165K 0.10 tolerated(0.28) benign(0.007) TCGA-2W-A8YY-01 11 55065595 55065595 G A TRIM51HP RNA 0.42 TCGA-2W-A8YY-01 11 55135816 55135816 G T OR4A15 Missense_Mutation p.A153S 0.30 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-2W-A8YY-01 11 5530147 5530147 C T UBQLN3 Silent p.P214P 0.27 TCGA-2W-A8YY-01 11 55433099 55433099 C T OR4C6 Missense_Mutation p.H153Y 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-2W-A8YY-01 11 55541446 55541446 A C OR5D13 Missense_Mutation p.N178T 0.10 deleterious(0) possibly_damaging(0.904) TCGA-2W-A8YY-01 11 55588015 55588015 G A OR5D18 Missense_Mutation p.E304K 0.38 tolerated(1) benign(0) TCGA-2W-A8YY-01 11 55606455 55606455 C A OR5D16 Silent p.S76S 0.36 TCGA-2W-A8YY-01 11 5566381 5566381 C T OR52H1 Missense_Mutation p.A125T 0.22 deleterious(0.02) benign(0.007) TCGA-2W-A8YY-01 11 55703497 55703497 G A OR5I1 Missense_Mutation p.A127V 0.42 deleterious(0) benign(0.197) TCGA-2W-A8YY-01 11 55735358 55735358 C T OR10AG1 Silent p.A194A 0.42 TCGA-2W-A8YY-01 11 55761619 55761619 G A OR5F1 Silent p.S161S 0.30 TCGA-2W-A8YY-01 11 558658 558658 C T C11orf35 Silent p.R89R 0.34 TCGA-2W-A8YY-01 11 56043170 56043170 C T OR5T1 Missense_Mutation p.T19I 0.25 deleterious(0) probably_damaging(0.948) TCGA-2W-A8YY-01 11 56237926 56237926 C T OR5M3 Silent p.T16T 0.15 TCGA-2W-A8YY-01 11 5624571 5624571 G A TRIM6 Missense_Mutation p.R38Q 0.35 tolerated(0.7) benign(0.002) TCGA-2W-A8YY-01 11 56310670 56310670 C T OR5M11 Missense_Mutation p.E22K 0.40 deleterious(0.02) benign(0.128) TCGA-2W-A8YY-01 11 56380195 56380195 G A OR5M1 Missense_Mutation p.P262S 0.24 tolerated(0.05) benign(0.033) TCGA-2W-A8YY-01 11 56587095 56587095 G A OR5G5P RNA 0.42 TCGA-2W-A8YY-01 11 5686077 5686077 A G TRIM5 Missense_Mutation p.C482R 0.14 deleterious(0) possibly_damaging(0.529) TCGA-2W-A8YY-01 11 5687209 5687209 A G TRIM5 Splice_Site p.X290_splice 0.09 TCGA-2W-A8YY-01 11 56949887 56949887 G A LRRC55 Missense_Mutation p.D174N 0.41 tolerated(0.42) benign(0.007) TCGA-2W-A8YY-01 11 5700352 5700352 T G TRIM5 Missense_Mutation p.E155D 0.12 tolerated(0.08) benign(0.216) TCGA-2W-A8YY-01 11 57069415 57069415 G A TNKS1BP1 Missense_Mutation p.P1613S 0.46 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 57070017 57070017 G A TNKS1BP1 Silent p.S1533S 0.22 TCGA-2W-A8YY-01 11 57076711 57076711 C T TNKS1BP1 Silent p.S1158S 0.48 TCGA-2W-A8YY-01 11 57081128 57081128 T C TNKS1BP1 Missense_Mutation p.D345G 0.40 tolerated(0.34) benign(0.083) TCGA-2W-A8YY-01 11 57087812 57087812 C T TNKS1BP1 Missense_Mutation p.A157T 0.35 tolerated(0.06) benign(0.115) TCGA-2W-A8YY-01 11 57095845 57095845 C T SSRP1 Missense_Mutation p.D513N 0.33 tolerated(0.12) benign(0.143) TCGA-2W-A8YY-01 11 57155304 57155304 C A PRG2 Missense_Mutation p.S178I 0.08 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 11 57177517 57177517 C T SLC43A3 Missense_Mutation p.A380T 0.13 deleterious(0.04) benign(0.002) TCGA-2W-A8YY-01 11 5717792 5717792 G A TRIM22 Silent p.E110E 0.33 TCGA-2W-A8YY-01 11 57185284 57185284 C T SLC43A3 Missense_Mutation p.R203H 0.36 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 11 57193170 57193170 C T SLC43A3 Intron 0.19 TCGA-2W-A8YY-01 11 57428529 57428529 G A CLP1 Missense_Mutation p.R300H 0.33 deleterious(0.02) possibly_damaging(0.903) TCGA-2W-A8YY-01 11 57564282 57564282 G A CTNND1 Silent p.G258G 0.49 TCGA-2W-A8YY-01 11 57572164 57572164 G A CTNND1 Missense_Mutation p.R545H 0.29 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 57575764 57575764 G A CTNND1 Silent p.T697T 0.38 TCGA-2W-A8YY-01 11 57584830 57584830 G A CTNND1 3'UTR 0.49 TCGA-2W-A8YY-01 11 57958767 57958767 G A OR9Q2 Missense_Mutation p.E269K 0.30 tolerated(0.07) benign(0.072) TCGA-2W-A8YY-01 11 57995915 57995915 A G OR10Q1 Missense_Mutation p.C145R 0.30 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 11 5809250 5809250 A G OR52N1 Missense_Mutation p.F266S 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 58206868 58206868 C T OR5B12 Missense_Mutation p.G253R 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.529) TCGA-2W-A8YY-01 11 58295534 58295534 T C LPXN Silent p.P296P 0.39 TCGA-2W-A8YY-01 11 58384781 58384781 T - ZFP91 Frame_Shift_Del p.F439Lfs*7 0.11 TCGA-2W-A8YY-01 11 5841962 5841962 C T OR52N2 Missense_Mutation p.R133C 0.34 deleterious(0.02) benign(0.028) TCGA-2W-A8YY-01 11 5842000 5842000 G T OR52N2 Missense_Mutation p.K145N 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-2W-A8YY-01 11 5842064 5842064 C T OR52N2 Missense_Mutation p.R167C 0.36 deleterious(0.03) benign(0.052) TCGA-2W-A8YY-01 11 58477597 58477597 G A GLYAT Missense_Mutation p.A178V 0.27 deleterious(0.04) possibly_damaging(0.651) TCGA-2W-A8YY-01 11 5905658 5905658 A G OR52E4 Missense_Mutation p.T46A 0.43 tolerated(0.19) benign(0.059) TCGA-2W-A8YY-01 11 59271506 59271506 T G OR4D11 Missense_Mutation p.F153C 0.40 deleterious(0.02) probably_damaging(0.986) TCGA-2W-A8YY-01 11 59343785 59343785 T C OSBP 3'UTR 0.41 TCGA-2W-A8YY-01 11 59344304 59344304 G A OSBP Missense_Mutation p.A752V 0.35 tolerated(0.07) possibly_damaging(0.772) TCGA-2W-A8YY-01 11 59361611 59361611 C T OSBP Missense_Mutation p.A477T 0.34 deleterious(0.03) probably_damaging(0.993) TCGA-2W-A8YY-01 11 59424026 59424026 A G PATL1 Silent p.R223R 0.28 TCGA-2W-A8YY-01 11 59558036 59558036 G A STX3 Missense_Mutation p.D112N 0.42 deleterious(0.02) possibly_damaging(0.905) TCGA-2W-A8YY-01 11 59610010 59610010 G A GIF Silent p.I139I 0.35 TCGA-2W-A8YY-01 11 59814524 59814524 C A OOSP2 Missense_Mutation p.S152Y 0.30 deleterious(0.04) benign(0.295) TCGA-2W-A8YY-01 11 59814576 59814576 G A OOSP2 3'UTR 0.38 TCGA-2W-A8YY-01 11 59940483 59940483 G A MS4A6A Silent p.G251G 0.38 TCGA-2W-A8YY-01 11 6007209 6007209 G A OR52L1 Missense_Mutation p.R318C 0.38 deleterious(0) possibly_damaging(0.863) TCGA-2W-A8YY-01 11 6007365 6007365 T C OR52L1 Missense_Mutation p.I266V 0.35 deleterious(0.01) possibly_damaging(0.578) TCGA-2W-A8YY-01 11 60231288 60231288 G A MS4A1 Intron 0.17 TCGA-2W-A8YY-01 11 60296923 60296923 G A MS4A13 Missense_Mutation p.C131Y 0.37 deleterious(0.04) possibly_damaging(0.6) TCGA-2W-A8YY-01 11 60428225 60428225 C T LINC00301 RNA 0.31 TCGA-2W-A8YY-01 11 60468359 60468359 C T MS4A8 Missense_Mutation p.P9L 0.44 deleterious(0.02) benign(0.155) TCGA-2W-A8YY-01 11 60468497 60468497 C T MS4A8 Missense_Mutation p.S55L 0.45 tolerated(0.11) benign(0.003) TCGA-2W-A8YY-01 11 60470906 60470906 C T MS4A8 Missense_Mutation p.T92M 0.08 tolerated(0.09) possibly_damaging(0.672) TCGA-2W-A8YY-01 11 60482512 60482512 T C MS4A8 Missense_Mutation p.S185P 0.22 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 60609923 60609923 A G CCDC86 Missense_Mutation p.Y109C 0.31 deleterious(0.03) benign(0.009) TCGA-2W-A8YY-01 11 60617927 60617927 C T CCDC86 3'UTR 0.33 TCGA-2W-A8YY-01 11 60658560 60658560 C - PRPF19 3'UTR 0.25 TCGA-2W-A8YY-01 11 60669885 60669885 A G PRPF19 Missense_Mutation p.I172T 0.28 deleterious(0) benign(0.339) TCGA-2W-A8YY-01 11 60687194 60687194 G - TMEM109 Frame_Shift_Del p.G11Efs*9 0.32 TCGA-2W-A8YY-01 11 60689590 60689590 C T TMEM109 Missense_Mutation p.R229C 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 60689688 60689688 C T TMEM109 3'UTR 0.14 TCGA-2W-A8YY-01 11 60689822 60689822 C T TMEM109 3'UTR 0.44 TCGA-2W-A8YY-01 11 60704105 60704105 C T TMEM132A Missense_Mutation p.A934V 0.23 tolerated(0.15) benign(0.281) TCGA-2W-A8YY-01 11 60704389 60704389 G A TMEM132A 3'UTR 0.12 TCGA-2W-A8YY-01 11 607560 607560 C T PHRF1 Nonsense_Mutation p.Q701* 0.24 TCGA-2W-A8YY-01 11 60781393 60781393 C A CD6 Missense_Mutation p.L432I 0.35 deleterious(0.03) benign(0.06) TCGA-2W-A8YY-01 11 60900756 60900756 C T VPS37C Missense_Mutation p.E107K 0.47 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 11 60906242 60906242 C T VPS37C Silent p.E20E 0.42 TCGA-2W-A8YY-01 11 61042039 61042039 C T VWCE Missense_Mutation p.G505S 0.29 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 11 61058985 61058985 C T VWCE Silent p.A58A 0.37 TCGA-2W-A8YY-01 11 61081572 61081572 C T DDB1 Missense_Mutation p.R567H 0.38 tolerated(0.22) benign(0.085) TCGA-2W-A8YY-01 11 61081668 61081668 T C DDB1 Missense_Mutation p.E535G 0.36 deleterious(0.03) benign(0.254) TCGA-2W-A8YY-01 11 61090508 61090508 C T DDB1 Missense_Mutation p.R327H 0.36 tolerated(0.08) benign(0.189) TCGA-2W-A8YY-01 11 61102099 61102099 T C DAK 5'UTR 0.45 TCGA-2W-A8YY-01 11 612161 612161 G A PHRF1 3'Flank 0.40 TCGA-2W-A8YY-01 11 61283478 61283478 G A SYT7 3'Flank 0.36 TCGA-2W-A8YY-01 11 61286143 61286143 G A SYT7 Missense_Mutation p.R465C 0.48 deleterious(0) possibly_damaging(0.88) TCGA-2W-A8YY-01 11 61290642 61290642 C T SYT7 Missense_Mutation p.A413T 0.21 tolerated(0.46) benign(0.013) TCGA-2W-A8YY-01 11 61295537 61295537 T A SYT7 Nonsense_Mutation p.K233* 0.50 TCGA-2W-A8YY-01 11 613552 613552 G A IRF7 Silent p.G310G 0.33 TCGA-2W-A8YY-01 11 613858 613858 G A IRF7 Silent p.A271A 0.64 TCGA-2W-A8YY-01 11 61543837 61543837 C T MYRF Missense_Mutation p.R478W 0.26 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 11 61545147 61545147 C T MYRF Intron 0.51 TCGA-2W-A8YY-01 11 61547380 61547380 C T MYRF Silent p.L772L 0.41 TCGA-2W-A8YY-01 11 61563610 61563610 C T FEN1 Silent p.I259I 0.50 TCGA-2W-A8YY-01 11 61570386 61570386 C T FADS1 Silent p.T447T 0.39 TCGA-2W-A8YY-01 11 61584165 61584165 C T FADS1 Nonsense_Mutation p.W79* 0.43 TCGA-2W-A8YY-01 11 61607911 61607911 G A FADS2 Missense_Mutation p.A142T 0.38 deleterious(0.04) benign(0.012) TCGA-2W-A8YY-01 11 61608179 61608179 C T FADS2 Silent p.F200F 0.19 TCGA-2W-A8YY-01 11 61646078 61646078 C T FADS3 Missense_Mutation p.R218H 0.38 tolerated(0.15) probably_damaging(1) TCGA-2W-A8YY-01 11 616726 616726 C T CDHR5 3'UTR 0.33 TCGA-2W-A8YY-01 11 616914 616914 G A CDHR5 3'UTR 0.44 TCGA-2W-A8YY-01 11 61734884 61734884 G A FTH1 Missense_Mutation p.S5F 0.41 tolerated(0.09) benign(0.004) TCGA-2W-A8YY-01 11 6191096 6191096 C A OR52B2 Missense_Mutation p.S154I 0.46 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 11 61959693 61959693 G A SCGB1D1 Missense_Mutation p.R74K 0.26 tolerated(0.25) benign(0.165) TCGA-2W-A8YY-01 11 62040558 62040558 T C SCGB2A2 3'UTR 0.39 TCGA-2W-A8YY-01 11 62159730 62159730 G A ASRGL1 Missense_Mutation p.D301N 0.41 deleterious(0.01) benign(0.125) TCGA-2W-A8YY-01 11 62159859 62159859 C T ASRGL1 3'UTR 0.38 TCGA-2W-A8YY-01 11 62287005 62287005 C A AHNAK Missense_Mutation p.D4962Y 0.29 probably_damaging(0.998) TCGA-2W-A8YY-01 11 62294296 62294296 G A AHNAK Silent p.D2531D 0.40 TCGA-2W-A8YY-01 11 6231467 6231467 C T C11orf42 Nonsense_Mutation p.R154* 0.47 TCGA-2W-A8YY-01 11 62327247 62327247 G A EEF1G Silent p.S406S 0.36 TCGA-2W-A8YY-01 11 6236065 6236065 C T FAM160A2 Silent p.T778T 0.33 TCGA-2W-A8YY-01 11 62363530 62363530 T C MTA2 Missense_Mutation p.M356V 0.29 tolerated(1) benign(0) TCGA-2W-A8YY-01 11 62370075 62370075 C T EML3 Missense_Mutation p.V855I 0.38 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 11 62373584 62373584 C T EML3 Missense_Mutation p.R536H 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 11 62392666 62392666 C T GANAB 3'UTR 0.41 TCGA-2W-A8YY-01 11 62397730 62397730 T C GANAB Missense_Mutation p.D533G 0.25 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 11 6243809 6243809 C T FAM160A2 Missense_Mutation p.A352T 0.23 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 11 62460180 62460180 C T BSCL2 Silent p.K240K 0.38 TCGA-2W-A8YY-01 11 62502922 62502922 C T TTC9C Nonsense_Mutation p.R103* 0.37 TCGA-2W-A8YY-01 11 62520108 62520108 C T ZBTB3 Silent p.Q393Q 0.31 TCGA-2W-A8YY-01 11 62521014 62521014 C A ZBTB3 Silent p.V91V 0.45 TCGA-2W-A8YY-01 11 62554126 62554126 C T TAF6L Silent p.G409G 0.35 TCGA-2W-A8YY-01 11 62606825 62606825 G A WDR74 Missense_Mutation p.A47V 0.47 tolerated(0.13) benign(0.005) TCGA-2W-A8YY-01 11 62649490 62649490 G A SLC3A2 Missense_Mutation p.G286S 0.49 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 62652677 62652677 G A SLC3A2 Missense_Mutation p.D385N 0.38 tolerated(0.28) benign(0.006) TCGA-2W-A8YY-01 11 62677485 62677485 G A CHRM1 Missense_Mutation p.A363V 0.42 tolerated(0.57) probably_damaging(0.923) TCGA-2W-A8YY-01 11 62678322 62678322 G A CHRM1 Missense_Mutation p.T84M 0.39 deleterious(0.03) benign(0.37) TCGA-2W-A8YY-01 11 62744825 62744825 G A SLC22A6 Nonsense_Mutation p.R466* 0.38 TCGA-2W-A8YY-01 11 62863555 62863555 C A SLC22A24 Missense_Mutation p.K326N 0.40 deleterious(0.04) benign(0.025) TCGA-2W-A8YY-01 11 62995963 62995963 C A SLC22A25 Missense_Mutation p.G159V 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 63325889 63325889 C T HRASLS2 Missense_Mutation p.R121H 0.42 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 11 63342389 63342389 T A PLA2G16 3'UTR 0.30 TCGA-2W-A8YY-01 11 63342404 63342404 C T PLA2G16 3'UTR 0.17 TCGA-2W-A8YY-01 11 6340391 6340391 C A PRKCDBP 3'UTR 0.25 TCGA-2W-A8YY-01 11 6340527 6340527 C T PRKCDBP Missense_Mutation p.A218T 0.34 tolerated_low_confidence(0.23) benign(0.054) TCGA-2W-A8YY-01 11 6340547 6340547 C T PRKCDBP Missense_Mutation p.R211H 0.39 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 11 6341407 6341407 C T PRKCDBP Silent p.V100V 0.50 TCGA-2W-A8YY-01 11 63486438 63486438 G A RTN3 Missense_Mutation p.R155H 0.41 tolerated(0.57) benign(0.001) TCGA-2W-A8YY-01 11 63586327 63586327 C T C11orf84 Nonsense_Mutation p.R263* 0.26 TCGA-2W-A8YY-01 11 63676796 63676796 C T MARK2 3'UTR 0.37 TCGA-2W-A8YY-01 11 63679910 63679910 C T RCOR2 Missense_Mutation p.R375H 0.15 deleterious(0) benign(0.313) TCGA-2W-A8YY-01 11 63681544 63681544 C T RCOR2 Missense_Mutation p.R258H 0.38 deleterious(0) benign(0.216) TCGA-2W-A8YY-01 11 63682150 63682150 A G RCOR2 Missense_Mutation p.C153R 0.33 deleterious(0) benign(0.265) TCGA-2W-A8YY-01 11 63884908 63884908 C T FLRT1 Missense_Mutation p.A390V 0.40 tolerated(0.35) benign(0.001) TCGA-2W-A8YY-01 11 63885517 63885517 G A FLRT1 Missense_Mutation p.G593D 0.30 deleterious(0) probably_damaging(0.954) TCGA-2W-A8YY-01 11 63885973 63885973 G A FLRT1 3'UTR 0.10 TCGA-2W-A8YY-01 11 63964965 63964965 C T STIP1 Missense_Mutation p.A267V 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 64064437 64064437 G A KCNK4 Missense_Mutation p.A93T 0.18 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 11 64084035 64084035 G A ESRRA 3'UTR 0.37 TCGA-2W-A8YY-01 11 6412127 6412127 C T SMPD1 Missense_Mutation p.A100V 0.38 tolerated(0.98) benign(0.009) TCGA-2W-A8YY-01 11 64124580 64124580 G A CCDC88B 3'UTR 0.41 TCGA-2W-A8YY-01 11 64128692 64128692 C T RPS6KA4 Silent p.S183S 0.27 TCGA-2W-A8YY-01 11 6413195 6413195 C T SMPD1 Silent p.T300T 0.42 TCGA-2W-A8YY-01 11 64135964 64135964 G A RPS6KA4 Missense_Mutation p.E409K 0.36 tolerated(0.11) benign(0.062) TCGA-2W-A8YY-01 11 6415557 6415557 A G SMPD1 Missense_Mutation p.Y539C 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 6422898 6422898 C T APBB1 Missense_Mutation p.R468H 0.44 deleterious(0) benign(0.206) TCGA-2W-A8YY-01 11 6423916 6423916 C T APBB1 Missense_Mutation p.E382K 0.40 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 11 6424911 6424911 G A APBB1 Missense_Mutation p.P288L 0.47 tolerated(0.08) benign(0.101) TCGA-2W-A8YY-01 11 64360883 64360883 G A SLC22A12 Silent p.G171G 0.29 TCGA-2W-A8YY-01 11 64427939 64427939 C T NRXN2 Missense_Mutation p.E752K 0.30 deleterious(0) benign(0.001) TCGA-2W-A8YY-01 11 64506848 64506848 C T RASGRP2 Missense_Mutation p.S266N 0.42 tolerated(0.05) possibly_damaging(0.723) TCGA-2W-A8YY-01 11 64514080 64514080 C T PYGM 3'UTR 0.48 TCGA-2W-A8YY-01 11 64518847 64518847 C T PYGM Missense_Mutation p.R640H 0.31 deleterious(0.02) possibly_damaging(0.894) TCGA-2W-A8YY-01 11 64519437 64519437 C T PYGM Missense_Mutation p.R576Q 0.41 deleterious(0) possibly_damaging(0.733) TCGA-2W-A8YY-01 11 64522266 64522266 C T PYGM Missense_Mutation p.V300M 0.44 tolerated(0.16) possibly_damaging(0.835) TCGA-2W-A8YY-01 11 64526135 64526135 C T PYGM Silent p.T95T 0.27 TCGA-2W-A8YY-01 11 64533059 64533059 C T SF1 Intron 0.33 TCGA-2W-A8YY-01 11 64557383 64557383 C T MAP4K2 Missense_Mutation p.G766D 0.39 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 11 64564314 64564314 C T MAP4K2 Missense_Mutation p.A487T 0.33 deleterious(0.04) benign(0.001) TCGA-2W-A8YY-01 11 64597260 64597260 C T CDC42BPG Missense_Mutation p.R1217H 0.38 tolerated(0.21) benign(0.021) TCGA-2W-A8YY-01 11 64606129 64606129 A G CDC42BPG Silent p.H374H 0.29 TCGA-2W-A8YY-01 11 64607676 64607676 C T CDC42BPG Missense_Mutation p.R166H 0.45 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 11 64663953 64663953 C T ATG2A Missense_Mutation p.R1803Q 0.12 deleterious(0) probably_damaging(0.932) TCGA-2W-A8YY-01 11 64665599 64665599 G A ATG2A Missense_Mutation p.A1606V 0.33 deleterious(0.02) benign(0.168) TCGA-2W-A8YY-01 11 64702252 64702252 C T GPHA2 Missense_Mutation p.R128H 0.54 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 64702261 64702261 C T GPHA2 Missense_Mutation p.R125H 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 11 64707227 64707227 C A C11orf85 Missense_Mutation p.D187Y 0.33 deleterious_low_confidence(0.03) benign(0.146) TCGA-2W-A8YY-01 11 64811866 64811866 C T SAC3D1 Silent p.C248C 0.23 TCGA-2W-A8YY-01 11 64815653 64815653 G A NAALADL1 Missense_Mutation p.A440V 0.33 deleterious(0) possibly_damaging(0.71) TCGA-2W-A8YY-01 11 64850965 64850965 C T CDCA5 Missense_Mutation p.A67T 0.33 tolerated(0.46) benign(0.008) TCGA-2W-A8YY-01 11 64864548 64864548 G A VPS51 Missense_Mutation p.D103N 0.25 tolerated(0.06) probably_damaging(0.982) TCGA-2W-A8YY-01 11 64877193 64877193 C T VPS51 Missense_Mutation p.T559M 0.37 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 11 64881005 64881005 C A TM7SF2 Missense_Mutation p.P181H 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 64895778 64895778 C A SYVN1 3'UTR 0.13 TCGA-2W-A8YY-01 11 64948397 64948397 C A AP003068.23 Nonsense_Mutation p.G201* 0.44 TCGA-2W-A8YY-01 11 64972278 64972278 C T CAPN1 Silent p.R430R 0.35 TCGA-2W-A8YY-01 11 64981532 64981532 C T CAPN1 3'Flank 0.32 TCGA-2W-A8YY-01 11 6503279 6503279 C T TIMM10B Missense_Mutation p.A47V 0.12 tolerated(0.2) benign(0.053) TCGA-2W-A8YY-01 11 65161121 65161121 G A FRMD8 Missense_Mutation p.A111T 0.14 deleterious(0.01) possibly_damaging(0.776) TCGA-2W-A8YY-01 11 65168210 65168210 C A FRMD8 Missense_Mutation p.L315M 0.31 deleterious(0.04) probably_damaging(0.974) TCGA-2W-A8YY-01 11 65270143 65270143 G A MALAT1 RNA 0.10 TCGA-2W-A8YY-01 11 65271542 65271542 A G MALAT1 RNA 0.40 TCGA-2W-A8YY-01 11 65294291 65294291 G A SCYL1 Missense_Mutation p.E214K 0.38 deleterious(0) probably_damaging(0.932) TCGA-2W-A8YY-01 11 65320384 65320384 C T LTBP3 Missense_Mutation p.R378H 0.13 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 11 65346592 65346592 C T EHBP1L1 Missense_Mutation p.R50C 0.45 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 11 65361075 65361075 C T KCNK7 Missense_Mutation p.C197Y 0.30 tolerated(0.14) benign(0.011) TCGA-2W-A8YY-01 11 65367130 65367130 G A MAP3K11 Silent p.R647R 0.46 TCGA-2W-A8YY-01 11 65385603 65385603 C T PCNXL3 Missense_Mutation p.T257I 0.30 tolerated(0.06) benign(0.047) TCGA-2W-A8YY-01 11 65385650 65385650 C T PCNXL3 Missense_Mutation p.R273C 0.24 deleterious(0.01) possibly_damaging(0.764) TCGA-2W-A8YY-01 11 65385887 65385887 G A PCNXL3 Missense_Mutation p.G352R 0.34 tolerated(0.06) possibly_damaging(0.514) TCGA-2W-A8YY-01 11 65388357 65388357 G A PCNXL3 Missense_Mutation p.G719S 0.47 tolerated(1) benign(0.179) TCGA-2W-A8YY-01 11 65388369 65388369 C T PCNXL3 Silent p.L723L 0.47 TCGA-2W-A8YY-01 11 65391965 65391965 G A PCNXL3 Missense_Mutation p.V914I 0.40 tolerated(1) benign(0.029) TCGA-2W-A8YY-01 11 65396113 65396113 G A PCNXL3 Silent p.A1250A 0.10 TCGA-2W-A8YY-01 11 65402802 65402802 C T PCNXL3 Silent p.S1689S 0.40 TCGA-2W-A8YY-01 11 65402912 65402912 T C PCNXL3 Missense_Mutation p.V1726A 0.50 deleterious(0) probably_damaging(0.963) TCGA-2W-A8YY-01 11 65427624 65427624 C T RELA Missense_Mutation p.R133H 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 65429450 65429450 G A RELA Silent p.G48G 0.45 TCGA-2W-A8YY-01 11 65546930 65546930 G A AP5B1 Missense_Mutation p.A345V 0.28 tolerated(0.12) benign(0.259) TCGA-2W-A8YY-01 11 65562620 65562620 G A OVOL1 Silent p.A204A 0.29 TCGA-2W-A8YY-01 11 65622454 65622454 C T CFL1 3'UTR 0.47 TCGA-2W-A8YY-01 11 65632215 65632215 C T MUS81 Missense_Mutation p.R401C 0.31 deleterious(0.01) probably_damaging(0.943) TCGA-2W-A8YY-01 11 65632775 65632775 C T MUS81 Nonsense_Mutation p.R496* 0.28 TCGA-2W-A8YY-01 11 65638093 65638093 C T EFEMP2 Missense_Mutation p.R135H 0.24 deleterious(0.05) possibly_damaging(0.908) TCGA-2W-A8YY-01 11 65649959 65649959 G A CTSW Missense_Mutation p.R167H 0.44 tolerated(0.54) benign(0.009) TCGA-2W-A8YY-01 11 6566303 6566303 C T DNHD1 Silent p.C1378C 0.33 TCGA-2W-A8YY-01 11 6569229 6569229 T C DNHD1 Silent p.L2288L 0.20 TCGA-2W-A8YY-01 11 65746134 65746134 C T SART1 Missense_Mutation p.R746W 0.35 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 11 65746354 65746354 G A SART1 Missense_Mutation p.V785M 0.27 deleterious(0) probably_damaging(0.945) TCGA-2W-A8YY-01 11 65792870 65792870 G A CATSPER1 Silent p.I327I 0.54 TCGA-2W-A8YY-01 11 65810909 65810909 G A GAL3ST3 Missense_Mutation p.P122L 0.44 deleterious(0.05) probably_damaging(0.98) TCGA-2W-A8YY-01 11 65820145 65820145 T C SF3B2 Silent p.G45G 0.29 TCGA-2W-A8YY-01 11 65827356 65827356 G A SF3B2 Missense_Mutation p.R502H 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 11 65836232 65836232 C T SF3B2 3'UTR 0.37 TCGA-2W-A8YY-01 11 65836339 65836339 T C SF3B2 3'UTR 0.63 TCGA-2W-A8YY-01 11 6585203 6585203 A C DNHD1 Missense_Mutation p.N3378T 0.45 benign(0.012) TCGA-2W-A8YY-01 11 6587937 6587937 G A DNHD1 Missense_Mutation p.R3776H 0.48 benign(0.004) TCGA-2W-A8YY-01 11 6591961 6591961 C T DNHD1 Nonsense_Mutation p.R4407* 0.33 TCGA-2W-A8YY-01 11 6592054 6592054 C A DNHD1 Silent p.R4438R 0.50 TCGA-2W-A8YY-01 11 6592510 6592510 C T DNHD1 Missense_Mutation p.R4590C 0.25 probably_damaging(0.97) TCGA-2W-A8YY-01 11 66029166 66029166 C T KLC2 Intron 0.42 TCGA-2W-A8YY-01 11 66033624 66033624 C T KLC2 Missense_Mutation p.R555C 0.31 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-2W-A8YY-01 11 66039847 66039847 G A RAB1B Silent p.A65A 0.47 TCGA-2W-A8YY-01 11 66051110 66051110 G A CNIH2 3'UTR 0.48 TCGA-2W-A8YY-01 11 66101624 66101624 G A RIN1 Missense_Mutation p.R453W 0.58 deleterious(0.01) benign(0.022) TCGA-2W-A8YY-01 11 66131826 66131826 G A SLC29A2 Silent p.L377L 0.23 TCGA-2W-A8YY-01 11 66193582 66193582 C T NPAS4 3'UTR 0.09 TCGA-2W-A8YY-01 11 66193757 66193757 G A NPAS4 3'UTR 0.23 TCGA-2W-A8YY-01 11 66204653 66204653 A G MRPL11 Missense_Mutation p.L132P 0.23 deleterious(0) benign(0.039) TCGA-2W-A8YY-01 11 6621765 6621765 C T RRP8 Missense_Mutation p.R401Q 0.40 tolerated(0.11) benign(0.047) TCGA-2W-A8YY-01 11 6622161 6622161 C T RRP8 Missense_Mutation p.A348T 0.31 deleterious(0.05) probably_damaging(0.947) TCGA-2W-A8YY-01 11 66238786 66238786 G A PELI3 Missense_Mutation p.A100T 0.31 deleterious(0.01) possibly_damaging(0.595) TCGA-2W-A8YY-01 11 66240861 66240861 C G PELI3 Silent p.R202R 0.33 TCGA-2W-A8YY-01 11 66243561 66243561 G A PELI3 Missense_Mutation p.A445T 0.31 tolerated(0.14) probably_damaging(0.994) TCGA-2W-A8YY-01 11 66255407 66255407 G A DPP3 Missense_Mutation p.R199Q 0.30 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 11 66276735 66276735 G A CTD-3074O7.11 Nonsense_Mutation p.W36* 0.43 TCGA-2W-A8YY-01 11 66293635 66293635 G A BBS1 Silent p.E384E 0.38 TCGA-2W-A8YY-01 11 6629425 6629425 G A ILK Missense_Mutation p.R80H 0.35 tolerated(0.49) benign(0.016) TCGA-2W-A8YY-01 11 66298425 66298425 C T BBS1 Missense_Mutation p.R512C 0.42 deleterious(0.04) possibly_damaging(0.894) TCGA-2W-A8YY-01 11 6630012 6630012 T C ILK Missense_Mutation p.L147P 0.45 tolerated(0.27) benign(0.214) TCGA-2W-A8YY-01 11 66322091 66322091 C T CTD-3074O7.2 3'Flank 0.29 TCGA-2W-A8YY-01 11 66325513 66325513 T C CTD-3074O7.2 3'Flank 0.09 TCGA-2W-A8YY-01 11 66334787 66334787 C T CTSF Silent p.L179L 0.11 TCGA-2W-A8YY-01 11 6634141 6634141 C T TPP1 3'UTR 0.55 TCGA-2W-A8YY-01 11 6635031 6635031 G A TPP1 3'UTR 0.39 TCGA-2W-A8YY-01 11 6638244 6638244 C T TPP1 Missense_Mutation p.G217S 0.42 tolerated(0.06) probably_damaging(0.974) TCGA-2W-A8YY-01 11 6638329 6638329 C T TPP1 Silent p.P188P 0.26 TCGA-2W-A8YY-01 11 66407107 66407107 T A RBM4 5'UTR 0.30 TCGA-2W-A8YY-01 11 66413555 66413555 C T RBM14-RBM4 3'UTR 0.40 TCGA-2W-A8YY-01 11 66432715 66432715 G A RBM4B 3'UTR 0.39 TCGA-2W-A8YY-01 11 66436539 66436539 G A RBM4B Silent p.N212N 0.52 TCGA-2W-A8YY-01 11 6644816 6644816 C A DCHS1 Missense_Mutation p.Q2697H 0.27 tolerated(0.06) possibly_damaging(0.722) TCGA-2W-A8YY-01 11 6645358 6645358 C T DCHS1 Missense_Mutation p.A2517T 0.44 tolerated(0.55) benign(0.008) TCGA-2W-A8YY-01 11 66468140 66468140 G A SPTBN2 Nonsense_Mutation p.R1144* 0.36 TCGA-2W-A8YY-01 11 66478387 66478387 C T SPTBN2 Splice_Site p.X295_splice 0.24 TCGA-2W-A8YY-01 11 66481562 66481562 C T SPTBN2 Missense_Mutation p.R219Q 0.20 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 11 66526546 66526546 G A C11orf80 Missense_Mutation p.V168I 0.40 tolerated(0.14) benign(0.198) TCGA-2W-A8YY-01 11 6655175 6655175 C T DCHS1 Missense_Mutation p.R688Q 0.36 tolerated(0.63) benign(0.069) TCGA-2W-A8YY-01 11 66613421 66613421 G A RCE1 Missense_Mutation p.R282Q 0.44 tolerated(0.3) benign(0.028) TCGA-2W-A8YY-01 11 6661446 6661446 C T DCHS1 Missense_Mutation p.D467N 0.41 deleterious(0) probably_damaging(0.949) TCGA-2W-A8YY-01 11 66627399 66627399 C T LRFN4 Silent p.G547G 0.31 TCGA-2W-A8YY-01 11 66638661 66638661 G A PC Silent p.P165P 0.36 TCGA-2W-A8YY-01 11 66838918 66838918 G A RHOD Missense_Mutation p.A160T 0.48 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 11 67017970 67017970 G A KDM2A Silent p.T823T 0.36 TCGA-2W-A8YY-01 11 67049146 67049146 C T ADRBK1 Missense_Mutation p.S258L 0.20 deleterious(0.01) probably_damaging(0.913) TCGA-2W-A8YY-01 11 67051373 67051373 G A ADRBK1 Missense_Mutation p.A482T 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-2W-A8YY-01 11 67053961 67053961 G A ADRBK1 3'UTR 0.43 TCGA-2W-A8YY-01 11 67068589 67068589 G A ANKRD13D Missense_Mutation p.R401H 0.39 deleterious(0.03) possibly_damaging(0.868) TCGA-2W-A8YY-01 11 67072452 67072452 C A SSH3 Missense_Mutation p.L105M 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 11 67079246 67079246 A G SSH3 Missense_Mutation p.E623G 0.10 tolerated_low_confidence(0.2) benign(0.001) TCGA-2W-A8YY-01 11 67120247 67120247 G A POLD4 Missense_Mutation p.R72W 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 67186654 67186654 G A CARNS1 Silent p.T264T 0.33 TCGA-2W-A8YY-01 11 67201717 67201717 C T RPS6KB2 Missense_Mutation p.R340C 0.34 deleterious(0) possibly_damaging(0.696) TCGA-2W-A8YY-01 11 67202152 67202152 C T RPS6KB2 Missense_Mutation p.R419W 0.26 deleterious(0.02) probably_damaging(0.952) TCGA-2W-A8YY-01 11 67223088 67223088 A G CABP4 Missense_Mutation p.E65G 0.46 tolerated(0.08) benign(0.255) TCGA-2W-A8YY-01 11 67260944 67260944 G A PITPNM1 Silent p.C1093C 0.32 TCGA-2W-A8YY-01 11 67262631 67262631 C T PITPNM1 Missense_Mutation p.A850T 0.13 tolerated(0.07) benign(0.028) TCGA-2W-A8YY-01 11 67262951 67262951 C T PITPNM1 Missense_Mutation p.A814T 0.40 tolerated(0.58) benign(0.009) TCGA-2W-A8YY-01 11 67267448 67267448 G A PITPNM1 Missense_Mutation p.R334C 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-2W-A8YY-01 11 67274847 67274847 C T CDK2AP2 Missense_Mutation p.R101H 0.30 deleterious(0.02) probably_damaging(0.957) TCGA-2W-A8YY-01 11 6736953 6736953 G A GVINP1 RNA 0.43 TCGA-2W-A8YY-01 11 67379004 67379004 C T NDUFV1 Silent p.G348G 0.32 TCGA-2W-A8YY-01 11 6740329 6740329 G A GVINP1 RNA 0.15 TCGA-2W-A8YY-01 11 6742639 6742639 G T GVINP1 RNA 0.56 TCGA-2W-A8YY-01 11 67431887 67431887 C T ALDH3B2 Missense_Mutation p.A285T 0.34 tolerated(0.1) benign(0.127) TCGA-2W-A8YY-01 11 67564257 67564257 G A FAM86C2P RNA 0.08 TCGA-2W-A8YY-01 11 67759136 67759136 C T UNC93B1 Missense_Mutation p.G558S 0.35 tolerated(0.39) benign(0.005) TCGA-2W-A8YY-01 11 67795331 67795331 C T ALDH3B1 Missense_Mutation p.P442L 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 67795536 67795536 C T ALDH3B1 3'UTR 0.33 TCGA-2W-A8YY-01 11 67842204 67842204 G A CHKA Nonsense_Mutation p.R204* 0.30 TCGA-2W-A8YY-01 11 68181289 68181289 G A LRP5 Missense_Mutation p.R879H 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-2W-A8YY-01 11 68181375 68181375 C T LRP5 Missense_Mutation p.H908Y 0.30 tolerated(1) benign(0) TCGA-2W-A8YY-01 11 68205969 68205969 C T LRP5 Silent p.P1389P 0.34 TCGA-2W-A8YY-01 11 68483320 68483320 C T MTL5 Silent p.R335R 0.34 TCGA-2W-A8YY-01 11 68517816 68517816 C T MTL5 Missense_Mutation p.A105T 0.44 deleterious(0.04) benign(0.085) TCGA-2W-A8YY-01 11 68571499 68571499 G A CPT1A Missense_Mutation p.P175L 0.27 deleterious(0.01) probably_damaging(0.978) TCGA-2W-A8YY-01 11 6867520 6867520 G A OR10A5 Missense_Mutation p.G203R 0.43 tolerated(0.4) benign(0.365) TCGA-2W-A8YY-01 11 68703858 68703858 G A IGHMBP2 Missense_Mutation p.R637H 0.09 deleterious(0.04) possibly_damaging(0.833) TCGA-2W-A8YY-01 11 68704131 68704131 A G IGHMBP2 Missense_Mutation p.H728R 0.59 tolerated(0.77) benign(0.001) TCGA-2W-A8YY-01 11 68747646 68747646 G A MRGPRD Silent p.S270S 0.41 TCGA-2W-A8YY-01 11 68747845 68747845 C T MRGPRD Nonsense_Mutation p.W204* 0.44 TCGA-2W-A8YY-01 11 68847332 68847332 C T TPCN2 Nonsense_Mutation p.R524* 0.31 TCGA-2W-A8YY-01 11 6891320 6891320 C A OR10A2 Missense_Mutation p.A112D 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-2W-A8YY-01 11 6891550 6891550 G A OR10A2 Missense_Mutation p.G189R 0.20 tolerated(0.39) benign(0.365) TCGA-2W-A8YY-01 11 69062759 69062759 G A MYEOV Intron 0.29 TCGA-2W-A8YY-01 11 691524 691524 C T DEAF1 Missense_Mutation p.A122T 0.35 tolerated(0.12) benign(0.194) TCGA-2W-A8YY-01 11 6942493 6942493 C T OR2D3 Silent p.L87L 0.32 TCGA-2W-A8YY-01 11 69468366 69468366 G A CCND1 3'UTR 0.44 TCGA-2W-A8YY-01 11 69488073 69488073 A G ORAOV1 Missense_Mutation p.Y23H 0.52 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 11 69588047 69588047 C T FGF4 3'UTR 0.34 TCGA-2W-A8YY-01 11 69625079 69625079 C T FGF3 Silent p.A238A 0.25 TCGA-2W-A8YY-01 11 69625316 69625316 G A FGF3 Silent p.G159G 0.32 TCGA-2W-A8YY-01 11 6977415 6977415 G A ZNF215 Missense_Mutation p.G403R 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 69978057 69978057 C T ANO1 Missense_Mutation p.T377I 0.35 tolerated(0.18) benign(0.248) TCGA-2W-A8YY-01 11 70028614 70028614 G A ANO1 Missense_Mutation p.V804M 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 70034022 70034022 C T ANO1 Missense_Mutation p.P958L 0.27 tolerated(0.26) benign(0.001) TCGA-2W-A8YY-01 11 70035468 70035468 C T ANO1 3'UTR 0.40 TCGA-2W-A8YY-01 11 70049601 70049601 G A FADD Silent p.S12S 0.44 TCGA-2W-A8YY-01 11 70052441 70052441 G A FADD Silent p.G163G 0.29 TCGA-2W-A8YY-01 11 7021660 7021660 G A ZNF214 Silent p.D418D 0.39 TCGA-2W-A8YY-01 11 70229425 70229425 C A PPFIA1 3'UTR 0.10 TCGA-2W-A8YY-01 11 70229562 70229562 G A PPFIA1 3'UTR 0.50 TCGA-2W-A8YY-01 11 70253459 70253459 C T CTTN Missense_Mutation p.A19V 0.25 tolerated(0.07) possibly_damaging(0.772) TCGA-2W-A8YY-01 11 70265949 70265949 C T CTTN Silent p.H222H 0.36 TCGA-2W-A8YY-01 11 70277322 70277322 C T CTTN Missense_Mutation p.T364M 0.38 deleterious(0.01) possibly_damaging(0.855) TCGA-2W-A8YY-01 11 70279290 70279290 C A CTTN Silent p.A413A 0.46 TCGA-2W-A8YY-01 11 70281206 70281206 C T CTTN Missense_Mutation p.R494C 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 11 70331703 70331703 G A SHANK2 Silent p.D1566D 0.16 TCGA-2W-A8YY-01 11 70332270 70332270 G A SHANK2 Silent p.V1377V 0.28 TCGA-2W-A8YY-01 11 70348945 70348945 G A SHANK2 Missense_Mutation p.T719M 0.34 tolerated(0.75) benign(0.015) TCGA-2W-A8YY-01 11 7063679 7063679 A G NLRP14 Missense_Mutation p.K141R 0.48 tolerated(0.24) benign(0.055) TCGA-2W-A8YY-01 11 7063741 7063741 T A NLRP14 Missense_Mutation p.L162M 0.47 deleterious(0.03) possibly_damaging(0.452) TCGA-2W-A8YY-01 11 7064263 7064263 G A NLRP14 Missense_Mutation p.E336K 0.24 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 11 70666648 70666648 C T SHANK2 Silent p.T439T 0.53 TCGA-2W-A8YY-01 11 70858220 70858220 C A SHANK2 Missense_Mutation p.E51D 0.53 tolerated(1) benign(0.009) TCGA-2W-A8YY-01 11 7111140 7111140 C T RBMXL2 Silent p.Y263Y 0.36 TCGA-2W-A8YY-01 11 71146615 71146615 G A DHCR7 Silent p.L412L 0.47 TCGA-2W-A8YY-01 11 71152358 71152358 G A DHCR7 Silent p.L181L 0.18 TCGA-2W-A8YY-01 11 71169579 71169579 C T NADSYN1 Silent p.C84C 0.37 TCGA-2W-A8YY-01 11 71188404 71188404 G T NADSYN1 Intron 0.32 TCGA-2W-A8YY-01 11 71188431 71188431 G T NADSYN1 Intron 0.39 TCGA-2W-A8YY-01 11 71192995 71192995 C T NADSYN1 Silent p.G358G 0.36 TCGA-2W-A8YY-01 11 71208552 71208552 G A NADSYN1 Silent p.A596A 0.28 TCGA-2W-A8YY-01 11 71510780 71510780 C T FAM86C1 3'UTR 0.43 TCGA-2W-A8YY-01 11 71706597 71706597 C T RNF121 Missense_Mutation p.P288L 0.38 deleterious(0.03) probably_damaging(0.982) TCGA-2W-A8YY-01 11 71712365 71712365 C T IL18BP Silent p.S118S 0.22 TCGA-2W-A8YY-01 11 71715814 71715814 C T NUMA1 Missense_Mutation p.D1960N 0.56 probably_damaging(0.999) TCGA-2W-A8YY-01 11 71725778 71725778 C T NUMA1 Missense_Mutation p.R924H 0.38 possibly_damaging(0.888) TCGA-2W-A8YY-01 11 71808754 71808754 C A LAMTOR1 3'UTR 0.48 TCGA-2W-A8YY-01 11 71821637 71821637 C T ANAPC15 Missense_Mutation p.A45T 0.17 tolerated(0.19) benign(0.008) TCGA-2W-A8YY-01 11 71850759 71850759 C T FOLR3 Missense_Mutation p.R250C 0.40 deleterious(0.03) benign(0.398) TCGA-2W-A8YY-01 11 71932038 71932038 G A FOLR2 Missense_Mutation p.R92H 0.38 tolerated(0.1) benign(0.117) TCGA-2W-A8YY-01 11 71932634 71932634 G A FOLR2 Missense_Mutation p.G199E 0.30 deleterious(0) probably_damaging(0.93) TCGA-2W-A8YY-01 11 71941483 71941483 C T INPPL1 Missense_Mutation p.R390C 0.42 deleterious(0) possibly_damaging(0.893) TCGA-2W-A8YY-01 11 71942551 71942551 C T INPPL1 Nonsense_Mutation p.Q503* 0.33 TCGA-2W-A8YY-01 11 71944160 71944160 C T INPPL1 Missense_Mutation p.R665W 0.37 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 721626 721626 C T EPS8L2 Missense_Mutation p.A277V 0.69 deleterious(0) possibly_damaging(0.753) TCGA-2W-A8YY-01 11 721978 721978 C T EPS8L2 Missense_Mutation p.A324V 0.42 deleterious(0) possibly_damaging(0.803) TCGA-2W-A8YY-01 11 72385266 72385266 C A PDE2A 5'UTR 0.28 TCGA-2W-A8YY-01 11 72396529 72396529 C A ARAP1 3'UTR 0.35 TCGA-2W-A8YY-01 11 72397228 72397228 G A ARAP1 Silent p.G1398G 0.25 TCGA-2W-A8YY-01 11 72408970 72408970 T G ARAP1 Missense_Mutation p.K908T 0.24 deleterious(0) possibly_damaging(0.666) TCGA-2W-A8YY-01 11 72415345 72415345 C T ARAP1 Missense_Mutation p.R615H 0.41 tolerated(0.18) benign(0.003) TCGA-2W-A8YY-01 11 72466051 72466051 T C STARD10 Missense_Mutation p.H256R 0.41 tolerated(0.68) possibly_damaging(0.84) TCGA-2W-A8YY-01 11 72528883 72528883 C T ATG16L2 Missense_Mutation p.R101W 0.44 deleterious(0) possibly_damaging(0.79) TCGA-2W-A8YY-01 11 73007726 73007726 C T P2RY6 Missense_Mutation p.R55C 0.33 tolerated(0.11) probably_damaging(0.976) TCGA-2W-A8YY-01 11 73020664 73020664 T C ARHGEF17 Silent p.P327P 0.12 TCGA-2W-A8YY-01 11 73117624 73117624 G A FAM168A 3'UTR 0.18 TCGA-2W-A8YY-01 11 73429936 73429936 C A RAB6A Splice_Site p.X62_splice 0.09 TCGA-2W-A8YY-01 11 73571014 73571014 T C MRPL48 Missense_Mutation p.L145P 0.30 tolerated(0.18) benign(0.027) TCGA-2W-A8YY-01 11 73625464 73625464 G A PAAF1 Missense_Mutation p.R245Q 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-2W-A8YY-01 11 73680333 73680333 C T DNAJB13 Missense_Mutation p.R255C 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 73681198 73681198 G A DNAJB13 3'UTR 0.46 TCGA-2W-A8YY-01 11 73686595 73686595 G A UCP2 Silent p.S252S 0.44 TCGA-2W-A8YY-01 11 73712517 73712517 G T UCP3 Silent p.T293T 0.46 TCGA-2W-A8YY-01 11 73717220 73717220 C T UCP3 Missense_Mutation p.A111T 0.50 tolerated(0.49) benign(0.001) TCGA-2W-A8YY-01 11 73745137 73745137 G T C2CD3 3'Flank 0.33 TCGA-2W-A8YY-01 11 73768561 73768561 C T C2CD3 Silent p.S1660S 0.32 TCGA-2W-A8YY-01 11 73796909 73796909 C T C2CD3 Missense_Mutation p.A1222T 0.47 tolerated(0.2) benign(0.031) TCGA-2W-A8YY-01 11 73965556 73965556 C T PPME1 3'UTR 0.29 TCGA-2W-A8YY-01 11 74168410 74168410 G A KCNE3 Silent p.L67L 0.37 TCGA-2W-A8YY-01 11 74203302 74203302 C T LIPT2 Missense_Mutation p.V192I 0.52 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 11 7437387 7437387 G A SYT9 Missense_Mutation p.A387T 0.32 tolerated(0.41) possibly_damaging(0.816) TCGA-2W-A8YY-01 11 74547764 74547764 G A RNF169 Missense_Mutation p.G706R 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 74563080 74563080 G T XRRA1 Silent p.L398L 0.43 TCGA-2W-A8YY-01 11 74660335 74660335 C T SPCS2 Missense_Mutation p.A2V 0.38 deleterious_low_confidence(0) benign(0.194) TCGA-2W-A8YY-01 11 7488480 7488480 T G SYT9 3'UTR 0.39 TCGA-2W-A8YY-01 11 7507024 7507024 G A OLFML1 5'UTR 0.51 TCGA-2W-A8YY-01 11 75115738 75115738 G A RPS3 Silent p.K203K 0.40 TCGA-2W-A8YY-01 11 75115932 75115932 G A RPS3 Intron 0.33 TCGA-2W-A8YY-01 11 75148074 75148074 G A GDPD5 Missense_Mutation p.R526W 0.28 deleterious(0) possibly_damaging(0.656) TCGA-2W-A8YY-01 11 75277625 75277625 G A SERPINH1 Silent p.S77S 0.38 TCGA-2W-A8YY-01 11 75314066 75314066 C T MAP6 Intron 0.40 TCGA-2W-A8YY-01 11 75314431 75314431 G A MAP6 Intron 0.38 TCGA-2W-A8YY-01 11 75907557 75907557 C T WNT11 Missense_Mutation p.A97T 0.27 deleterious(0.04) benign(0.05) TCGA-2W-A8YY-01 11 76061014 76061014 A G PRKRIR 3'UTR 0.45 TCGA-2W-A8YY-01 11 76062283 76062283 C T PRKRIR Silent p.T637T 0.35 TCGA-2W-A8YY-01 11 76063719 76063719 C A PRKRIR Nonsense_Mutation p.E159* 0.47 TCGA-2W-A8YY-01 11 76164466 76164466 A G C11orf30 Intron 0.23 TCGA-2W-A8YY-01 11 76256987 76256987 C T C11orf30 Silent p.A1140A 0.45 TCGA-2W-A8YY-01 11 76257265 76257265 C T C11orf30 Missense_Mutation p.A1233V 0.48 tolerated_low_confidence(0.58) benign(0) TCGA-2W-A8YY-01 11 763814 763814 C T TALDO1 Silent p.G235G 0.29 TCGA-2W-A8YY-01 11 763836 763836 G A TALDO1 Missense_Mutation p.E243K 0.32 deleterious(0) probably_damaging(0.915) TCGA-2W-A8YY-01 11 7647095 7647095 C T PPFIBP2 Missense_Mutation p.L267F 0.29 tolerated(0.7) benign(0.012) TCGA-2W-A8YY-01 11 76508670 76508670 G A TSKU 3'UTR 0.53 TCGA-2W-A8YY-01 11 7652221 7652221 G A PPFIBP2 Missense_Mutation p.A344T 0.20 tolerated(0.65) benign(0.001) TCGA-2W-A8YY-01 11 76731807 76731807 C T ACER3 3'UTR 0.27 TCGA-2W-A8YY-01 11 76827339 76827339 G A CAPN5 Missense_Mutation p.G321S 0.18 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 11 76867764 76867764 G A MYO7A Missense_Mutation p.A177T 0.32 tolerated(0.4) probably_damaging(0.982) TCGA-2W-A8YY-01 11 76869412 76869412 C T MYO7A Silent p.T313T 0.49 TCGA-2W-A8YY-01 11 76871308 76871308 G A MYO7A Missense_Mutation p.V394M 0.45 tolerated(0.24) possibly_damaging(0.704) TCGA-2W-A8YY-01 11 76873352 76873352 C T MYO7A Silent p.I510I 0.50 TCGA-2W-A8YY-01 11 76877203 76877203 G A MYO7A Missense_Mutation p.A598T 0.37 tolerated(0.48) probably_damaging(0.981) TCGA-2W-A8YY-01 11 76885835 76885835 C T MYO7A Missense_Mutation p.R657W 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 76910699 76910699 C T MYO7A Missense_Mutation p.A1563V 0.33 tolerated(0.41) benign(0.01) TCGA-2W-A8YY-01 11 76914164 76914164 G A MYO7A Missense_Mutation p.R1743Q 0.35 tolerated(0.39) benign(0.165) TCGA-2W-A8YY-01 11 770891 770891 G T PDDC1 3'UTR 0.35 TCGA-2W-A8YY-01 11 771040 771040 G T PDDC1 Missense_Mutation p.S203R 0.31 tolerated(0.33) benign(0.003) TCGA-2W-A8YY-01 11 7712493 7712493 T G OVCH2 Missense_Mutation p.K549T 0.15 tolerated(0.44) benign(0.079) TCGA-2W-A8YY-01 11 7716310 7716310 G A OVCH2 Silent p.A464A 0.46 TCGA-2W-A8YY-01 11 77348774 77348774 G A CLNS1A 5'UTR 0.31 TCGA-2W-A8YY-01 11 774043 774043 G A PDDC1 Missense_Mutation p.A71V 0.50 tolerated(0.08) benign(0.091) TCGA-2W-A8YY-01 11 77605364 77605365 - T INTS4 Frame_Shift_Ins p.F754Ifs*15 0.31 TCGA-2W-A8YY-01 11 77728126 77728126 C T KCTD14 Missense_Mutation p.R94H 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 11 77884098 77884098 C T KCTD21 3'UTR 0.36 TCGA-2W-A8YY-01 11 77917010 77917010 G A USP35 Silent p.K440K 0.41 TCGA-2W-A8YY-01 11 77924694 77924694 G A USP35 Silent p.E964E 0.32 TCGA-2W-A8YY-01 11 7817766 7817766 T C OR5P2 Missense_Mutation p.T242A 0.38 deleterious(0) possibly_damaging(0.521) TCGA-2W-A8YY-01 11 78285396 78285396 G T NARS2 Silent p.I46I 0.42 TCGA-2W-A8YY-01 11 78369202 78369202 G A TENM4 Silent p.Y2737Y 0.19 TCGA-2W-A8YY-01 11 78369639 78369639 G A TENM4 Nonsense_Mutation p.R2592* 0.55 TCGA-2W-A8YY-01 11 78413244 78413244 C T TENM4 Missense_Mutation p.A1472T 0.15 tolerated(0.05) possibly_damaging(0.508) TCGA-2W-A8YY-01 11 78498124 78498124 G A TENM4 Silent p.I728I 0.41 TCGA-2W-A8YY-01 11 78600933 78600933 G A TENM4 Silent p.A327A 0.41 TCGA-2W-A8YY-01 11 7949348 7949348 G A OR10A6 Missense_Mutation p.L288F 0.46 tolerated(0.07) benign(0.078) TCGA-2W-A8YY-01 11 7961060 7961060 C A OR10A3 Missense_Mutation p.R3I 0.45 tolerated(0.09) benign(0.019) TCGA-2W-A8YY-01 11 799447 799447 C T PIDD Missense_Mutation p.V865M 0.49 deleterious(0.02) benign(0.281) TCGA-2W-A8YY-01 11 799538 799538 G A PIDD Silent p.H834H 0.29 TCGA-2W-A8YY-01 11 8009216 8009216 A G EIF3F Missense_Mutation p.Y106C 0.40 deleterious(0.05) benign(0.429) TCGA-2W-A8YY-01 11 803346 803346 T C PIDD Silent p.T179T 0.20 TCGA-2W-A8YY-01 11 8122138 8122138 G A TUB Missense_Mutation p.R457H 0.11 deleterious(0.04) possibly_damaging(0.72) TCGA-2W-A8YY-01 11 8123123 8123123 C T TUB Missense_Mutation p.A548V 0.10 deleterious(0) possibly_damaging(0.756) TCGA-2W-A8YY-01 11 812868 812868 A G RPLP2 3'UTR 0.23 TCGA-2W-A8YY-01 11 823788 823788 G A PNPLA2 Silent p.A284A 0.27 TCGA-2W-A8YY-01 11 8252049 8252049 C T LMO1 Missense_Mutation p.V10M 0.44 tolerated(0.08) possibly_damaging(0.668) TCGA-2W-A8YY-01 11 82564267 82564267 T C PRCP Silent p.E142E 0.25 TCGA-2W-A8YY-01 11 82644407 82644407 C A C11orf82 Missense_Mutation p.S676Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 11 8284991 8284991 G A LMO1 5'UTR 0.47 TCGA-2W-A8YY-01 11 828763 828763 C T EFCAB4A Silent p.H52H 0.43 TCGA-2W-A8YY-01 11 82896060 82896060 A G PCF11 3'UTR 0.30 TCGA-2W-A8YY-01 11 82909527 82909527 G T ANKRD42 Missense_Mutation p.R22M 0.28 deleterious(0) possibly_damaging(0.625) TCGA-2W-A8YY-01 11 82959146 82959146 A C ANKRD42 3'UTR 0.33 TCGA-2W-A8YY-01 11 83344296 83344296 G A DLG2 Missense_Mutation p.S633F 0.27 deleterious(0) probably_damaging(0.921) TCGA-2W-A8YY-01 11 83984224 83984224 A G DLG2 Intron 0.38 TCGA-2W-A8YY-01 11 84028176 84028176 G T DLG2 Intron 0.20 TCGA-2W-A8YY-01 11 8496411 8496411 G A STK33 Silent p.P14P 0.18 TCGA-2W-A8YY-01 11 84996352 84996352 T G DLG2 Missense_Mutation p.K33T 0.37 deleterious_low_confidence(0.01) benign(0.023) TCGA-2W-A8YY-01 11 85416056 85416056 G A SYTL2 Nonsense_Mutation p.Q1045* 0.29 TCGA-2W-A8YY-01 11 85435841 85435841 T G SYTL2 Silent p.T553T 0.15 TCGA-2W-A8YY-01 11 85437441 85437441 T G SYTL2 Missense_Mutation p.K20T 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.647) TCGA-2W-A8YY-01 11 85622377 85622377 G T CCDC83 Silent p.L242L 0.36 TCGA-2W-A8YY-01 11 85714415 85714415 G A PICALM Missense_Mutation p.A296V 0.26 deleterious(0.02) possibly_damaging(0.694) TCGA-2W-A8YY-01 11 85961419 85961419 A G EED Missense_Mutation p.K66E 0.41 deleterious(0.04) benign(0.13) TCGA-2W-A8YY-01 11 85967458 85967458 G A EED Nonsense_Mutation p.W152* 0.25 TCGA-2W-A8YY-01 11 85989333 85989333 C A EED Intron 0.43 TCGA-2W-A8YY-01 11 86017477 86017477 C T C11orf73 Missense_Mutation p.T74M 0.10 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 11 86086142 86086142 A G CCDC81 5'UTR 0.32 TCGA-2W-A8YY-01 11 862579 862579 C T TSPAN4 Silent p.G31G 0.34 TCGA-2W-A8YY-01 11 8646322 8646322 T C TRIM66 Missense_Mutation p.T775A 0.75 tolerated(1) benign(0) TCGA-2W-A8YY-01 11 86518850 86518850 C T PRSS23 Silent p.A55A 0.38 TCGA-2W-A8YY-01 11 8661993 8661993 G A TRIM66 Silent p.G496G 0.14 TCGA-2W-A8YY-01 11 8662025 8662025 G A TRIM66 Silent p.L486L 0.36 TCGA-2W-A8YY-01 11 8667413 8667413 G A TRIM66 Missense_Mutation p.R180W 0.50 deleterious(0) possibly_damaging(0.667) TCGA-2W-A8YY-01 11 87033834 87033834 G T TMEM135 3'Flank 0.46 TCGA-2W-A8YY-01 11 8752549 8752549 G A ST5 Silent p.T96T 0.44 TCGA-2W-A8YY-01 11 87847244 87847244 T C RAB38 Missense_Mutation p.D183G 0.39 tolerated(0.21) benign(0.031) TCGA-2W-A8YY-01 11 88027551 88027551 G A CTSC Missense_Mutation p.R339C 0.46 deleterious(0.03) possibly_damaging(0.661) TCGA-2W-A8YY-01 11 88027635 88027635 C T CTSC Missense_Mutation p.A311T 0.12 deleterious(0.03) benign(0.418) TCGA-2W-A8YY-01 11 88241349 88241349 G T GRM5 3'UTR 0.45 TCGA-2W-A8YY-01 11 88258552 88258552 G A GRM5 Missense_Mutation p.A884V 0.35 tolerated(0.4) benign(0.001) TCGA-2W-A8YY-01 11 88300698 88300698 T C GRM5 Missense_Mutation p.D718G 0.47 tolerated(0.14) benign(0.253) TCGA-2W-A8YY-01 11 88301032 88301032 T C GRM5 Missense_Mutation p.T607A 0.35 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 11 89028353 89028353 A G TYR Missense_Mutation p.Q470R 0.32 tolerated(0.16) probably_damaging(0.993) TCGA-2W-A8YY-01 11 89070639 89070639 G A NOX4 Silent p.Y497Y 0.36 TCGA-2W-A8YY-01 11 89450703 89450703 G A TRIM77 Missense_Mutation p.G339D 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 89924740 89924740 C A NAALAD2 Missense_Mutation p.A683D 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 899342 899342 G A CHID1 Silent p.R227R 0.12 TCGA-2W-A8YY-01 11 904848 904848 G A CHID1 5'UTR 0.29 TCGA-2W-A8YY-01 11 9082046 9082046 G A SCUBE2 Silent p.G292G 0.34 TCGA-2W-A8YY-01 11 9187483 9187483 C A DENND5A Missense_Mutation p.S728I 0.40 tolerated(0.06) benign(0.067) TCGA-2W-A8YY-01 11 92086552 92086552 G A FAT3 Missense_Mutation p.R425Q 0.67 benign(0.001) TCGA-2W-A8YY-01 11 92086948 92086948 G A FAT3 Missense_Mutation p.R557H 0.33 probably_damaging(1) TCGA-2W-A8YY-01 11 9225770 9225770 C T DENND5A Missense_Mutation p.R129Q 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 11 92620272 92620272 C T FAT3 Silent p.D4348D 0.09 TCGA-2W-A8YY-01 11 92895871 92895871 C T SLC36A4 Splice_Site p.X346_splice 0.33 TCGA-2W-A8YY-01 11 92896014 92896014 C A SLC36A4 Nonsense_Mutation p.E299* 0.31 TCGA-2W-A8YY-01 11 93141496 93141496 G A CCDC67 Missense_Mutation p.V476I 0.47 tolerated(0.2) benign(0.005) TCGA-2W-A8YY-01 11 93412684 93412684 G A KIAA1731 Missense_Mutation p.G244E 0.21 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 11 93416834 93416834 A C KIAA1731 Missense_Mutation p.K292T 0.26 deleterious(0) possibly_damaging(0.617) TCGA-2W-A8YY-01 11 93458865 93458865 A C KIAA1731 Missense_Mutation p.S2123R 0.40 tolerated(0.12) benign(0.081) TCGA-2W-A8YY-01 11 93469408 93469408 C A TAF1D Missense_Mutation p.E252D 0.37 tolerated_low_confidence(0.07) benign(0.225) TCGA-2W-A8YY-01 11 93471395 93471395 T G TAF1D Missense_Mutation p.R113S 0.44 deleterious(0.01) benign(0.295) TCGA-2W-A8YY-01 11 93517870 93517870 A C MED17 Missense_Mutation p.E64A 0.28 tolerated(0.09) benign(0.062) TCGA-2W-A8YY-01 11 93839261 93839261 A G HEPHL1 Missense_Mutation p.T1004A 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 11 93911564 93911564 G A PANX1 Silent p.A117A 0.31 TCGA-2W-A8YY-01 11 94134116 94134116 G A GPR83 Nonsense_Mutation p.Q100* 0.50 TCGA-2W-A8YY-01 11 94230115 94230115 C T ANKRD49 Missense_Mutation p.R86W 0.38 tolerated(0.08) benign(0.035) TCGA-2W-A8YY-01 11 94279213 94279213 C T FUT4 3'UTR 0.37 TCGA-2W-A8YY-01 11 94280461 94280461 A C FUT4 3'UTR 0.23 TCGA-2W-A8YY-01 11 94281143 94281143 T C FUT4 3'UTR 0.15 TCGA-2W-A8YY-01 11 94282711 94282711 T G FUT4 3'UTR 0.33 TCGA-2W-A8YY-01 11 94301942 94301942 G A PIWIL4 Missense_Mutation p.G45D 0.47 tolerated(0.18) benign(0.001) TCGA-2W-A8YY-01 11 94335056 94335056 C T PIWIL4 Silent p.S492S 0.32 TCGA-2W-A8YY-01 11 9442053 9442053 G A IPO7 Splice_Site p.X274_splice 0.42 TCGA-2W-A8YY-01 11 94554798 94554798 G A AMOTL1 Silent p.P408P 0.39 TCGA-2W-A8YY-01 11 94554930 94554930 C T AMOTL1 Silent p.N452N 0.29 TCGA-2W-A8YY-01 11 94563235 94563235 G A AMOTL1 Missense_Mutation p.R478K 0.37 tolerated(0.08) benign(0.075) TCGA-2W-A8YY-01 11 94730559 94730559 C T KDM4D Missense_Mutation p.A8V 0.29 tolerated(0.3) benign(0.008) TCGA-2W-A8YY-01 11 94730922 94730922 G A KDM4D Missense_Mutation p.R129H 0.39 deleterious(0.03) possibly_damaging(0.527) TCGA-2W-A8YY-01 11 94731900 94731900 G A KDM4D Missense_Mutation p.R455H 0.36 deleterious_low_confidence(0.04) probably_damaging(0.977) TCGA-2W-A8YY-01 11 94802090 94802090 T C SRSF8 3'UTR 0.52 TCGA-2W-A8YY-01 11 94922974 94922974 C T SESN3 Missense_Mutation p.R165Q 0.31 deleterious(0.04) probably_damaging(0.994) TCGA-2W-A8YY-01 11 9494252 9494252 C T ZNF143 Silent p.G47G 0.53 TCGA-2W-A8YY-01 11 95503737 95503737 T A FAM76B 3'UTR 0.31 TCGA-2W-A8YY-01 11 95504198 95504198 A G FAM76B 3'UTR 0.17 TCGA-2W-A8YY-01 11 95532460 95532460 T C CEP57 Missense_Mutation p.V37A 0.41 tolerated(0.58) probably_damaging(0.986) TCGA-2W-A8YY-01 11 95532480 95532480 C T CEP57 Missense_Mutation p.P44S 0.40 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 11 95551020 95551020 C A CEP57 Missense_Mutation p.L192I 0.45 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 11 95656921 95656921 G A MTMR2 Intron 0.37 TCGA-2W-A8YY-01 11 96123966 96123966 G T JRKL Missense_Mutation p.K51N 0.46 deleterious(0.02) possibly_damaging(0.88) TCGA-2W-A8YY-01 11 977105 977105 G A AP2A2 Missense_Mutation p.D162N 0.35 tolerated(0.27) benign(0.028) TCGA-2W-A8YY-01 12 100043307 100043307 C T FAM71C 3'UTR 0.44 TCGA-2W-A8YY-01 12 100048923 100048923 C T ANKS1B Silent p.T398T 0.31 TCGA-2W-A8YY-01 12 100169361 100169361 G T ANKS1B Nonsense_Mutation p.S309* 0.40 TCGA-2W-A8YY-01 12 100452349 100452349 A G UHRF1BP1L Silent p.N902N 0.15 TCGA-2W-A8YY-01 12 100598740 100598740 C T ACTR6 Missense_Mutation p.R31W 0.36 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 100707282 100707282 C T SCYL2 Missense_Mutation p.P312L 0.35 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 12 100774691 100774691 A G SLC17A8 Missense_Mutation p.N105S 0.37 deleterious(0.04) possibly_damaging(0.547) TCGA-2W-A8YY-01 12 101133863 101133863 C T ANO4 Missense_Mutation p.T113I 0.33 deleterious_low_confidence(0) benign(0.033) TCGA-2W-A8YY-01 12 10124282 10124282 A G CLEC12A Silent p.E39E 0.39 TCGA-2W-A8YY-01 12 10133323 10133323 A C CLEC12A Missense_Mutation p.K184N 0.33 tolerated(0.08) benign(0.291) TCGA-2W-A8YY-01 12 101381342 101381342 C T ANO4 Missense_Mutation p.R175W 0.39 tolerated(0.24) possibly_damaging(0.761) TCGA-2W-A8YY-01 12 101477552 101477552 A G ANO4 Missense_Mutation p.K463E 0.46 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 101491679 101491679 G A ANO4 Missense_Mutation p.M619I 0.35 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 12 101505452 101505452 A G ANO4 Missense_Mutation p.Y770C 0.37 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 12 101520705 101520705 C A ANO4 Missense_Mutation p.L874I 0.46 tolerated(0.08) benign(0.03) TCGA-2W-A8YY-01 12 101520726 101520726 C T ANO4 Nonsense_Mutation p.R881* 0.34 TCGA-2W-A8YY-01 12 101588871 101588871 A G SLC5A8 Splice_Site p.X179_splice 0.31 TCGA-2W-A8YY-01 12 101701981 101701981 C T UTP20 Missense_Mutation p.R672W 0.38 tolerated(0.19) benign(0.003) TCGA-2W-A8YY-01 12 101794920 101794920 C A ARL1 Missense_Mutation p.D86Y 0.27 deleterious(0) possibly_damaging(0.819) TCGA-2W-A8YY-01 12 102122603 102122603 G T SYCP3 3'UTR 0.59 TCGA-2W-A8YY-01 12 102161839 102161839 C T GNPTAB Missense_Mutation p.D462N 0.25 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 12 1022526 1022526 A G RAD52 3'UTR 0.40 TCGA-2W-A8YY-01 12 102291646 102291646 C T DRAM1 Missense_Mutation p.T46M 0.37 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 10233861 10233861 A G CLEC1A Silent p.C122C 0.31 TCGA-2W-A8YY-01 12 102558380 102558381 - T PARPBP Frame_Shift_Ins p.L222Ffs*8 0.20 TCGA-2W-A8YY-01 12 102569424 102569424 A C PARPBP Missense_Mutation p.T329P 0.33 deleterious(0.03) benign(0.039) TCGA-2W-A8YY-01 12 10277908 10277908 G T CLEC7A Missense_Mutation p.S160R 0.41 deleterious(0) possibly_damaging(0.756) TCGA-2W-A8YY-01 12 102869570 102869570 A G IGF1 Missense_Mutation p.M24T 0.29 deleterious(0) benign(0.097) TCGA-2W-A8YY-01 12 1035973 1035973 G A RAD52 Intron 0.48 TCGA-2W-A8YY-01 12 1036020 1036020 G A RAD52 Intron 0.49 TCGA-2W-A8YY-01 12 103695766 103695766 C A C12orf42 3'UTR 0.59 TCGA-2W-A8YY-01 12 10374515 10374515 C T GABARAPL1 3'UTR 0.53 TCGA-2W-A8YY-01 12 104042529 104042529 C T STAB2 Nonsense_Mutation p.R368* 0.38 TCGA-2W-A8YY-01 12 104138993 104138993 C T STAB2 Missense_Mutation p.T2025M 0.41 tolerated(0.1) benign(0.23) TCGA-2W-A8YY-01 12 104153033 104153033 C T STAB2 Silent p.S2410S 0.42 TCGA-2W-A8YY-01 12 104337626 104337626 C T HSP90B1 Silent p.Y667Y 0.40 TCGA-2W-A8YY-01 12 104388244 104388244 C T GLT8D2 Silent p.K212K 0.32 TCGA-2W-A8YY-01 12 104496946 104496946 G A HCFC2 Silent p.R758R 0.47 TCGA-2W-A8YY-01 12 104512987 104512987 A - NFYB 3'UTR 0.36 TCGA-2W-A8YY-01 12 104517055 104517055 G A NFYB Silent p.G126G 0.42 TCGA-2W-A8YY-01 12 104698762 104698762 A T EID3 3'UTR 0.44 TCGA-2W-A8YY-01 12 104728112 104728112 T C TXNRD1 Splice_Site p.X582_splice 0.36 TCGA-2W-A8YY-01 12 10530764 10530764 T C KLRK1 Missense_Mutation p.Q167R 0.22 tolerated(0.07) possibly_damaging(0.651) TCGA-2W-A8YY-01 12 105451872 105451872 C T ALDH1L2 Silent p.E422E 0.40 TCGA-2W-A8YY-01 12 107078653 107078653 C T RFX4 Intron 0.37 TCGA-2W-A8YY-01 12 107144501 107144501 C T RFX4 Missense_Mutation p.P631L 0.33 deleterious_low_confidence(0) benign(0.308) TCGA-2W-A8YY-01 12 107177780 107177780 G A RIC8B Silent p.R30R 0.11 TCGA-2W-A8YY-01 12 10772903 10772903 C T STYK1 Missense_Mutation p.R370H 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 10777286 10777286 C T STYK1 Missense_Mutation p.R297Q 0.38 tolerated(0.28) probably_damaging(0.999) TCGA-2W-A8YY-01 12 108090290 108090290 A G PWP1 Missense_Mutation p.D181G 0.44 deleterious(0.01) possibly_damaging(0.669) TCGA-2W-A8YY-01 12 108634278 108634278 C T WSCD2 Silent p.G434G 0.73 TCGA-2W-A8YY-01 12 108910710 108910710 C T FICD 5'UTR 0.28 TCGA-2W-A8YY-01 12 108912293 108912293 G A FICD Missense_Mutation p.V140M 0.29 tolerated(0.08) possibly_damaging(0.564) TCGA-2W-A8YY-01 12 108913103 108913103 G A FICD Missense_Mutation p.D410N 0.37 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 12 108918092 108918092 C T SART3 Splice_Site p.X905_splice 0.45 TCGA-2W-A8YY-01 12 108938916 108938916 C T SART3 Missense_Mutation p.R243Q 0.26 tolerated(1) benign(0.006) TCGA-2W-A8YY-01 12 108961001 108961001 C T ISCU Silent p.I125I 0.48 TCGA-2W-A8YY-01 12 108985507 108985507 T G TMEM119 Missense_Mutation p.E218A 0.40 tolerated(0.17) benign(0.225) TCGA-2W-A8YY-01 12 108985571 108985571 C A TMEM119 Missense_Mutation p.A197S 0.33 tolerated(0.18) possibly_damaging(0.689) TCGA-2W-A8YY-01 12 109017215 109017215 G T SELPLG Missense_Mutation p.S306Y 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 12 109096667 109096667 C T CORO1C Intron 0.41 TCGA-2W-A8YY-01 12 109185965 109185965 G A SSH1 Intron 0.35 TCGA-2W-A8YY-01 12 109205076 109205076 G A SSH1 Nonsense_Mutation p.R144* 0.46 TCGA-2W-A8YY-01 12 109281238 109281238 A G DAO Silent p.Q69Q 0.35 TCGA-2W-A8YY-01 12 109616920 109616920 A G ACACB Missense_Mutation p.I489V 0.38 tolerated(0.24) benign(0.019) TCGA-2W-A8YY-01 12 109629710 109629710 C T ACACB Missense_Mutation p.A785V 0.38 tolerated(0.47) benign(0.002) TCGA-2W-A8YY-01 12 109670543 109670543 C T ACACB Silent p.S1357S 0.38 TCGA-2W-A8YY-01 12 109702935 109702935 C A ACACB Silent p.T2321T 0.31 TCGA-2W-A8YY-01 12 109725262 109725262 G T FOXN4 Missense_Mutation p.A179D 0.47 deleterious(0) benign(0.033) TCGA-2W-A8YY-01 12 10978441 10978441 T C TAS2R10 Missense_Mutation p.N143S 0.37 tolerated(1) benign(0.01) TCGA-2W-A8YY-01 12 10978489 10978489 A G TAS2R10 Missense_Mutation p.M127T 0.35 tolerated(0.54) benign(0) TCGA-2W-A8YY-01 12 109862613 109862613 A C MYO1H Missense_Mutation p.N553H 0.37 deleterious(0.02) possibly_damaging(0.531) TCGA-2W-A8YY-01 12 109936104 109936104 C T UBE3B Nonsense_Mutation p.R296* 0.37 TCGA-2W-A8YY-01 12 109940839 109940839 C T UBE3B Missense_Mutation p.R432C 0.50 deleterious(0.04) benign(0.007) TCGA-2W-A8YY-01 12 109940855 109940855 C T UBE3B Missense_Mutation p.S437L 0.47 tolerated(0.2) benign(0.034) TCGA-2W-A8YY-01 12 109947503 109947503 C A UBE3B Silent p.I575I 0.27 TCGA-2W-A8YY-01 12 109972460 109972460 G A UBE3B Missense_Mutation p.G1027D 0.09 tolerated(0.2) benign(0.216) TCGA-2W-A8YY-01 12 110017677 110017677 C T MVK Silent p.D99D 0.37 TCGA-2W-A8YY-01 12 110028633 110028633 C T MVK Silent p.A245A 0.26 TCGA-2W-A8YY-01 12 110205823 110205823 C T FAM222A Missense_Mutation p.A30V 0.36 tolerated(0.53) benign(0.004) TCGA-2W-A8YY-01 12 110206056 110206056 G A FAM222A Missense_Mutation p.A108T 0.35 tolerated(0.06) probably_damaging(0.991) TCGA-2W-A8YY-01 12 110288870 110288870 T G GLTP 3'UTR 0.36 TCGA-2W-A8YY-01 12 110290383 110290383 C T GLTP Missense_Mutation p.A203T 0.31 tolerated(0.08) benign(0.3) TCGA-2W-A8YY-01 12 110353317 110353317 C T TCHP Missense_Mutation p.A477V 0.45 deleterious(0.04) benign(0.103) TCGA-2W-A8YY-01 12 110385244 110385244 C T GIT2 Silent p.V486V 0.09 TCGA-2W-A8YY-01 12 110456186 110456186 G A ANKRD13A Missense_Mutation p.C146Y 0.37 tolerated(1) probably_damaging(0.999) TCGA-2W-A8YY-01 12 110457030 110457030 C T ANKRD13A Missense_Mutation p.L211F 0.44 tolerated(0.24) possibly_damaging(0.843) TCGA-2W-A8YY-01 12 110584757 110584757 G T IFT81 Splice_Site p.X316_splice 0.31 TCGA-2W-A8YY-01 12 110643473 110643473 G T IFT81 Missense_Mutation p.R597I 0.39 deleterious(0) benign(0.354) TCGA-2W-A8YY-01 12 110655953 110655953 G A IFT81 Silent p.Q651Q 0.11 TCGA-2W-A8YY-01 12 110927904 110927904 T C FAM216A Missense_Mutation p.S262P 0.52 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 111080117 111080117 G A TCTN1 Silent p.E418E 0.41 TCGA-2W-A8YY-01 12 111348813 111348813 G A MYL2 3'UTR 0.29 TCGA-2W-A8YY-01 12 111356965 111356965 G A MYL2 Silent p.G12G 0.22 TCGA-2W-A8YY-01 12 11139318 11139318 G A TAS2R50 Missense_Mutation p.L48F 0.38 deleterious(0.02) possibly_damaging(0.873) TCGA-2W-A8YY-01 12 11149931 11149931 G A TAS2R20 Silent p.L182L 0.45 TCGA-2W-A8YY-01 12 11150407 11150407 G A TAS2R20 Missense_Mutation p.A23V 0.24 tolerated(0.12) possibly_damaging(0.777) TCGA-2W-A8YY-01 12 111733167 111733167 G A CUX2 Silent p.A197A 0.40 TCGA-2W-A8YY-01 12 111744797 111744797 C T CUX2 Silent p.L311L 0.28 TCGA-2W-A8YY-01 12 111758450 111758450 C T CUX2 Silent p.T879T 0.30 TCGA-2W-A8YY-01 12 111786804 111786804 T C CUX2 3'UTR 0.50 TCGA-2W-A8YY-01 12 111798656 111798656 C A FAM109A 3'UTR 0.30 TCGA-2W-A8YY-01 12 111885606 111885606 C T SH2B3 Silent p.Y461Y 0.47 TCGA-2W-A8YY-01 12 111891585 111891585 G A ATXN2 Missense_Mutation p.T1270M 0.33 probably_damaging(0.978) TCGA-2W-A8YY-01 12 111893840 111893840 A G ATXN2 Missense_Mutation p.V1246A 0.15 possibly_damaging(0.489) TCGA-2W-A8YY-01 12 112098436 112098436 C A BRAP Nonsense_Mutation p.E314* 0.39 TCGA-2W-A8YY-01 12 112117112 112117112 C T BRAP Missense_Mutation p.R159H 0.38 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 112123605 112123605 C T BRAP 5'UTR 0.50 TCGA-2W-A8YY-01 12 112150353 112150353 A G ACAD10 Missense_Mutation p.T279A 0.26 tolerated(0.15) possibly_damaging(0.876) TCGA-2W-A8YY-01 12 112187005 112187005 C T ACAD10 Silent p.H922H 0.28 TCGA-2W-A8YY-01 12 112220980 112220980 G T RP11-162P23.2 Missense_Mutation p.V77L 0.49 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 12 112590287 112590287 G A TRAFD1 Missense_Mutation p.R559H 0.18 tolerated(0.13) benign(0.033) TCGA-2W-A8YY-01 12 112632776 112632776 G A HECTD4 Missense_Mutation p.R2742C 0.42 probably_damaging(0.989) TCGA-2W-A8YY-01 12 112646328 112646328 G A HECTD4 Silent p.S2512S 0.33 TCGA-2W-A8YY-01 12 112688877 112688877 G A HECTD4 Missense_Mutation p.S1059F 0.32 probably_damaging(0.949) TCGA-2W-A8YY-01 12 112844106 112844106 A C RPL6 Missense_Mutation p.L174R 0.45 deleterious(0) possibly_damaging(0.822) TCGA-2W-A8YY-01 12 112945479 112945479 G A PTPN11 3'UTR 0.33 TCGA-2W-A8YY-01 12 113357329 113357329 G A OAS1 Missense_Mutation p.R359K 0.39 tolerated(0.91) benign(0.004) TCGA-2W-A8YY-01 12 113369932 113369932 G A RP1-71H24.1 Intron 0.36 TCGA-2W-A8YY-01 12 113379553 113379553 C T OAS3 Missense_Mutation p.T119M 0.40 deleterious(0.04) benign(0.062) TCGA-2W-A8YY-01 12 113382354 113382354 C T OAS3 Silent p.G178G 0.39 TCGA-2W-A8YY-01 12 11338832 11338832 A G TAS2R42 Missense_Mutation p.S238P 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 12 113398982 113398982 G A OAS3 Silent p.R588R 0.39 TCGA-2W-A8YY-01 12 113402179 113402179 G A OAS3 Missense_Mutation p.R790Q 0.16 tolerated(0.51) benign(0.037) TCGA-2W-A8YY-01 12 113403591 113403591 G A OAS3 Missense_Mutation p.D816N 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 113442852 113442852 C T OAS2 Silent p.I431I 0.31 TCGA-2W-A8YY-01 12 113444380 113444380 G A OAS2 Missense_Mutation p.R544H 0.45 deleterious(0.01) probably_damaging(0.988) TCGA-2W-A8YY-01 12 113532677 113532677 C T DTX1 Silent p.L437L 0.44 TCGA-2W-A8YY-01 12 113534852 113534852 G A DTX1 3'UTR 0.45 TCGA-2W-A8YY-01 12 113539724 113539724 C T RASAL1 Missense_Mutation p.R733Q 0.33 tolerated(0.17) possibly_damaging(0.565) TCGA-2W-A8YY-01 12 113573333 113573333 C T RASAL1 5'UTR 0.36 TCGA-2W-A8YY-01 12 113596825 113596825 G A DDX54 Missense_Mutation p.R836W 0.29 deleterious(0) possibly_damaging(0.828) TCGA-2W-A8YY-01 12 113614685 113614685 G T DDX54 Missense_Mutation p.L238M 0.50 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 113624560 113624560 C T RITA1 Silent p.T3T 0.37 TCGA-2W-A8YY-01 12 113624645 113624645 T C RITA1 Missense_Mutation p.S32P 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 113698196 113698196 G A TPCN1 Missense_Mutation p.D118N 0.43 tolerated(0.38) benign(0.006) TCGA-2W-A8YY-01 12 113711416 113711416 G A TPCN1 Nonsense_Mutation p.W367* 0.47 TCGA-2W-A8YY-01 12 1137279 1137279 C T ERC1 Silent p.G70G 0.38 TCGA-2W-A8YY-01 12 113735090 113735090 C T TPCN1 3'UTR 0.45 TCGA-2W-A8YY-01 12 113735495 113735495 C A TPCN1 3'UTR 0.38 TCGA-2W-A8YY-01 12 113830839 113830839 G A SDS Silent p.L298L 0.38 TCGA-2W-A8YY-01 12 114792367 114792367 G A TBX5 3'UTR 0.45 TCGA-2W-A8YY-01 12 115108311 115108311 A G TBX3 3'UTR 0.33 TCGA-2W-A8YY-01 12 115109663 115109663 G A TBX3 Missense_Mutation p.R739C 0.34 deleterious_low_confidence(0.01) benign(0.001) TCGA-2W-A8YY-01 12 116396526 116396526 G A MED13L 3'UTR 0.27 TCGA-2W-A8YY-01 12 116397185 116397185 G T MED13L 3'UTR 0.39 TCGA-2W-A8YY-01 12 116397759 116397759 T C MED13L 3'UTR 0.52 TCGA-2W-A8YY-01 12 116401285 116401285 C T MED13L Missense_Mutation p.E2143K 0.48 deleterious(0.01) probably_damaging(0.967) TCGA-2W-A8YY-01 12 116403927 116403927 G A MED13L Missense_Mutation p.S2116L 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-2W-A8YY-01 12 116408404 116408404 T C MED13L Missense_Mutation p.N2021S 0.09 tolerated(0.51) benign(0.219) TCGA-2W-A8YY-01 12 116429696 116429696 G A MED13L Silent p.P1021P 0.49 TCGA-2W-A8YY-01 12 117014076 117014076 A G MAP1LC3B2 Missense_Mutation p.Y110C 0.42 deleterious(0.02) possibly_damaging(0.756) TCGA-2W-A8YY-01 12 117154263 117154263 G A C12orf49 3'UTR 0.42 TCGA-2W-A8YY-01 12 117583724 117583724 G A FBXO21 3'UTR 0.62 TCGA-2W-A8YY-01 12 117595739 117595739 G A FBXO21 Missense_Mutation p.R493C 0.31 deleterious(0) possibly_damaging(0.891) TCGA-2W-A8YY-01 12 117657958 117657958 G A NOS1 Silent p.L1398L 0.48 TCGA-2W-A8YY-01 12 117669884 117669884 G A NOS1 Silent p.F1130F 0.26 TCGA-2W-A8YY-01 12 117672442 117672442 G A NOS1 Missense_Mutation p.R1089W 0.37 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 12 117907513 117907513 G A KSR2 Nonsense_Mutation p.R934* 0.08 TCGA-2W-A8YY-01 12 118588508 118588508 G C TAOK3 3'UTR 0.35 TCGA-2W-A8YY-01 12 119419752 119419752 C T SRRM4 Missense_Mutation p.A22V 0.36 deleterious_low_confidence(0.05) unknown(0) TCGA-2W-A8YY-01 12 119599585 119599585 C T SRRM4 3'UTR 0.21 TCGA-2W-A8YY-01 12 119978545 119978545 C A CCDC60 3'UTR 0.43 TCGA-2W-A8YY-01 12 120156195 120156195 C T CIT Silent p.T1341T 0.42 TCGA-2W-A8YY-01 12 120156642 120156642 C T CIT Missense_Mutation p.D1289N 0.55 tolerated(0.37) possibly_damaging(0.735) TCGA-2W-A8YY-01 12 120172048 120172048 C T CIT Missense_Mutation p.V1091I 0.18 tolerated(0.11) benign(0.003) TCGA-2W-A8YY-01 12 12022629 12022629 C T ETV6 Silent p.C245C 0.26 TCGA-2W-A8YY-01 12 120313948 120313948 G A CIT Missense_Mutation p.R9W 0.19 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-2W-A8YY-01 12 12044320 12044320 C T ETV6 3'UTR 0.25 TCGA-2W-A8YY-01 12 12047851 12047851 C T ETV6 3'UTR 0.38 TCGA-2W-A8YY-01 12 120574439 120574439 C T GCN1L1 Missense_Mutation p.R2292H 0.50 benign(0.24) TCGA-2W-A8YY-01 12 120589000 120589000 C T GCN1L1 Missense_Mutation p.A1420T 0.38 benign(0.001) TCGA-2W-A8YY-01 12 120600651 120600651 C A GCN1L1 Missense_Mutation p.Q721H 0.36 benign(0.444) TCGA-2W-A8YY-01 12 120616557 120616557 G T GCN1L1 Silent p.P177P 0.43 TCGA-2W-A8YY-01 12 120649833 120649833 C T PXN 3'UTR 0.13 TCGA-2W-A8YY-01 12 120760037 120760037 C T PLA2G1B Missense_Mutation p.A136T 0.30 tolerated(0.07) benign(0.052) TCGA-2W-A8YY-01 12 120779592 120779592 G T MSI1 3'UTR 0.48 TCGA-2W-A8YY-01 12 120806056 120806056 C T MSI1 Missense_Mutation p.G41S 0.12 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 12 120878364 120878364 G A COX6A1 3'UTR 0.31 TCGA-2W-A8YY-01 12 120941637 120941637 C T COQ5 Missense_Mutation p.E312K 0.37 tolerated(0.09) benign(0.126) TCGA-2W-A8YY-01 12 121003293 121003293 C T RNF10 Missense_Mutation p.R616C 0.42 deleterious(0) benign(0.14) TCGA-2W-A8YY-01 12 121013632 121013632 C T RNF10 Silent p.S746S 0.27 TCGA-2W-A8YY-01 12 121134327 121134327 C A MLEC Silent p.L286L 0.28 TCGA-2W-A8YY-01 12 121138239 121138239 G A MLEC 3'UTR 0.38 TCGA-2W-A8YY-01 12 121161244 121161244 T - UNC119B 3'UTR 0.39 TCGA-2W-A8YY-01 12 121201487 121201487 G T SPPL3 3'UTR 0.57 TCGA-2W-A8YY-01 12 121202552 121202552 C T SPPL3 3'UTR 0.09 TCGA-2W-A8YY-01 12 121432032 121432032 C T HNF1A Missense_Mutation p.T260M 0.19 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 12 121432208 121432208 G A HNF1A Missense_Mutation p.G319S 0.40 deleterious(0.04) probably_damaging(0.995) TCGA-2W-A8YY-01 12 121437335 121437335 C T HNF1A Missense_Mutation p.P558L 0.29 deleterious_low_confidence(0) benign(0.213) TCGA-2W-A8YY-01 12 121437401 121437401 C T HNF1A Missense_Mutation p.P580L 0.40 tolerated_low_confidence(0.1) benign(0.002) TCGA-2W-A8YY-01 12 121442283 121442283 A G C12orf43 Silent p.S154S 0.38 TCGA-2W-A8YY-01 12 121655012 121655012 C T P2RX4 Silent p.G86G 0.15 TCGA-2W-A8YY-01 12 121670858 121670858 G A P2RX4 Missense_Mutation p.R384Q 0.09 deleterious(0.04) probably_damaging(0.996) TCGA-2W-A8YY-01 12 121675684 121675684 C T CAMKK2 3'UTR 0.34 TCGA-2W-A8YY-01 12 121675895 121675895 C A CAMKK2 3'UTR 0.50 TCGA-2W-A8YY-01 12 121711928 121711928 C T CAMKK2 Silent p.P134P 0.38 TCGA-2W-A8YY-01 12 121747526 121747526 G A ANAPC5 Silent p.Y678Y 0.34 TCGA-2W-A8YY-01 12 121758209 121758209 C T ANAPC5 Silent p.P498P 0.25 TCGA-2W-A8YY-01 12 121854125 121854125 G A RNF34 Missense_Mutation p.G58E 0.26 tolerated(1) possibly_damaging(0.804) TCGA-2W-A8YY-01 12 121867889 121867889 G A KDM2B 3'UTR 0.15 TCGA-2W-A8YY-01 12 121868295 121868295 T C KDM2B Intron 0.36 TCGA-2W-A8YY-01 12 121868314 121868314 G A KDM2B Intron 0.26 TCGA-2W-A8YY-01 12 121879011 121879011 G A KDM2B Missense_Mutation p.R1104C 0.33 deleterious(0.05) possibly_damaging(0.809) TCGA-2W-A8YY-01 12 121890923 121890923 C T KDM2B Silent p.A653A 0.29 TCGA-2W-A8YY-01 12 121951170 121951170 C T KDM2B Silent p.E361E 0.45 TCGA-2W-A8YY-01 12 122188309 122188309 G A TMEM120B Missense_Mutation p.G110D 0.37 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 12 122218930 122218930 G A TMEM120B 3'UTR 0.39 TCGA-2W-A8YY-01 12 122247782 122247782 C T SETD1B Missense_Mutation p.R311W 0.38 probably_damaging(1) TCGA-2W-A8YY-01 12 122252602 122252602 C T SETD1B Silent p.G827G 0.53 TCGA-2W-A8YY-01 12 122252780 122252780 G A SETD1B Missense_Mutation p.V887M 0.34 unknown(0) TCGA-2W-A8YY-01 12 122255000 122255000 A G SETD1B Missense_Mutation p.D926G 0.40 unknown(0) TCGA-2W-A8YY-01 12 122296877 122296877 G A HPD 5'Flank 0.50 TCGA-2W-A8YY-01 12 122354312 122354312 G A PSMD9 3'UTR 0.46 TCGA-2W-A8YY-01 12 122359381 122359381 C T WDR66 Missense_Mutation p.T57M 0.17 tolerated_low_confidence(0.11) benign(0.001) TCGA-2W-A8YY-01 12 122359388 122359388 G T WDR66 Missense_Mutation p.E59D 0.69 tolerated_low_confidence(0.36) benign(0.018) TCGA-2W-A8YY-01 12 122380493 122380493 C T WDR66 Missense_Mutation p.A351V 0.50 deleterious(0.02) possibly_damaging(0.842) TCGA-2W-A8YY-01 12 122389390 122389390 A T WDR66 Missense_Mutation p.E425V 0.36 deleterious(0.01) benign(0.033) TCGA-2W-A8YY-01 12 122392242 122392242 T C WDR66 Splice_Site p.X512_splice 0.32 TCGA-2W-A8YY-01 12 122618134 122618134 G A MLXIP Silent p.P444P 0.35 TCGA-2W-A8YY-01 12 122623076 122623076 G A MLXIP Missense_Mutation p.E788K 0.37 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 12 122626308 122626308 G T MLXIP Missense_Mutation p.E903D 0.31 tolerated(0.07) benign(0.37) TCGA-2W-A8YY-01 12 122674757 122674757 G A LRRC43 Missense_Mutation p.R248Q 0.34 tolerated(1) benign(0.029) TCGA-2W-A8YY-01 12 122675945 122675945 C T LRRC43 Missense_Mutation p.A307V 0.38 deleterious(0.05) probably_damaging(0.988) TCGA-2W-A8YY-01 12 122692440 122692440 G A DIABLO 3'UTR 0.42 TCGA-2W-A8YY-01 12 122729263 122729263 G A VPS33A Silent p.G274G 0.36 TCGA-2W-A8YY-01 12 122735567 122735567 G A VPS33A Missense_Mutation p.T188M 0.34 tolerated(0.09) possibly_damaging(0.75) TCGA-2W-A8YY-01 12 122756784 122756784 G A CLIP1 3'Flank 0.40 TCGA-2W-A8YY-01 12 122794330 122794330 G A CLIP1 Silent p.D1191D 0.09 TCGA-2W-A8YY-01 12 122964855 122964855 C T ZCCHC8 Missense_Mutation p.G341D 0.48 tolerated(0.7) benign(0.001) TCGA-2W-A8YY-01 12 122992836 122992836 C T RSRC2 Missense_Mutation p.A322T 0.26 deleterious(0.04) unknown(0) TCGA-2W-A8YY-01 12 123058846 123058846 C T KNTC1 Silent p.C767C 0.29 TCGA-2W-A8YY-01 12 123071288 123071288 C T KNTC1 Silent p.Y1238Y 0.30 TCGA-2W-A8YY-01 12 123214524 123214524 G A HCAR1 Silent p.H121H 0.32 TCGA-2W-A8YY-01 12 123214833 123214833 C T HCAR1 Missense_Mutation p.M18I 0.35 deleterious(0.01) probably_damaging(0.979) TCGA-2W-A8YY-01 12 123259208 123259208 G A CCDC62 5'UTR 0.33 TCGA-2W-A8YY-01 12 123341643 123341643 C T HIP1R Missense_Mutation p.R566W 0.40 deleterious(0.01) possibly_damaging(0.677) TCGA-2W-A8YY-01 12 123344323 123344323 T C HIP1R Missense_Mutation p.M804T 0.10 deleterious(0) benign(0.35) TCGA-2W-A8YY-01 12 123344342 123344342 C T HIP1R Silent p.H810H 0.44 TCGA-2W-A8YY-01 12 123345496 123345496 C T HIP1R Missense_Mutation p.R934C 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-2W-A8YY-01 12 123433332 123433332 C T ABCB9 Missense_Mutation p.D298N 0.31 tolerated(0.1) probably_damaging(0.918) TCGA-2W-A8YY-01 12 123463399 123463399 G A OGFOD2 Missense_Mutation p.G151R 0.41 deleterious(0) benign(0.414) TCGA-2W-A8YY-01 12 123463446 123463446 G A OGFOD2 Silent p.P166P 0.47 TCGA-2W-A8YY-01 12 123463714 123463714 G A OGFOD2 Missense_Mutation p.A232T 0.39 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 12 123465831 123465831 G A ARL6IP4 Missense_Mutation p.A172T 0.24 tolerated_low_confidence(0.24) benign(0.018) TCGA-2W-A8YY-01 12 123469816 123469816 G A PITPNM2 3'UTR 0.27 TCGA-2W-A8YY-01 12 123469990 123469990 G A PITPNM2 3'UTR 0.76 TCGA-2W-A8YY-01 12 123470032 123470032 G A PITPNM2 3'UTR 0.35 TCGA-2W-A8YY-01 12 123471054 123471054 C T PITPNM2 Missense_Mutation p.A1219T 0.38 deleterious(0.04) benign(0.169) TCGA-2W-A8YY-01 12 123641295 123641295 A G MPHOSPH9 3'UTR 0.40 TCGA-2W-A8YY-01 12 123646712 123646712 C T MPHOSPH9 Missense_Mutation p.R876H 0.40 tolerated(0.81) benign(0.023) TCGA-2W-A8YY-01 12 123679039 123679039 C T MPHOSPH9 Missense_Mutation p.R560Q 0.33 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 12 123789230 123789230 C A SBNO1 Nonsense_Mutation p.E1223* 0.43 TCGA-2W-A8YY-01 12 123829936 123829936 C T SBNO1 Missense_Mutation p.R140Q 0.41 tolerated_low_confidence(0.24) benign(0.003) TCGA-2W-A8YY-01 12 123892510 123892510 G A SETD8 3'UTR 0.32 TCGA-2W-A8YY-01 12 123893279 123893279 G A SETD8 3'UTR 0.42 TCGA-2W-A8YY-01 12 123968731 123968731 G A RILPL1 Nonsense_Mutation p.R355* 0.49 TCGA-2W-A8YY-01 12 124158359 124158359 C T TCTN2 Splice_Site p.X155_splice 0.35 TCGA-2W-A8YY-01 12 124171406 124171406 G A TCTN2 Silent p.T196T 0.36 TCGA-2W-A8YY-01 12 124192362 124192362 G A TCTN2 3'UTR 0.45 TCGA-2W-A8YY-01 12 124218553 124218553 T C ATP6V0A2 Silent p.D243D 0.29 TCGA-2W-A8YY-01 12 124317806 124317806 G A DNAH10 Missense_Mutation p.S1446N 0.30 probably_damaging(0.987) TCGA-2W-A8YY-01 12 124323134 124323134 G A DNAH10 Silent p.S1560S 0.46 TCGA-2W-A8YY-01 12 124323204 124323204 G A DNAH10 Missense_Mutation p.D1584N 0.33 benign(0.126) TCGA-2W-A8YY-01 12 124330340 124330340 G A DNAH10 Missense_Mutation p.D1734N 0.21 benign(0.177) TCGA-2W-A8YY-01 12 124399078 124399078 G A DNAH10 Missense_Mutation p.D3401N 0.53 benign(0.06) TCGA-2W-A8YY-01 12 124399470 124399470 G A DNAH10 Missense_Mutation p.R3431H 0.27 probably_damaging(0.999) TCGA-2W-A8YY-01 12 124403487 124403487 G A DNAH10 Missense_Mutation p.G3715S 0.16 benign(0.133) TCGA-2W-A8YY-01 12 124411329 124411329 C T DNAH10 Missense_Mutation p.R3905C 0.08 probably_damaging(0.969) TCGA-2W-A8YY-01 12 124419939 124419939 G A DNAH10 Missense_Mutation p.G4443S 0.40 probably_damaging(1) TCGA-2W-A8YY-01 12 124421862 124421862 G T CCDC92 Missense_Mutation p.L247M 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 124798894 124798894 C T FAM101A Silent p.R77R 0.48 TCGA-2W-A8YY-01 12 12483009 12483009 A G MANSC1 Silent p.R416R 0.42 TCGA-2W-A8YY-01 12 124839425 124839425 C T NCOR2 Missense_Mutation p.V1148I 0.31 benign(0.016) TCGA-2W-A8YY-01 12 125262972 125262972 G A SCARB1 3'UTR 0.29 TCGA-2W-A8YY-01 12 125292327 125292327 T C SCARB1 Missense_Mutation p.N330S 0.40 deleterious(0.02) probably_damaging(0.99) TCGA-2W-A8YY-01 12 125398035 125398035 G A UBC Missense_Mutation p.P95S 0.39 tolerated(1) benign(0.009) TCGA-2W-A8YY-01 12 125465262 125465262 G A DHX37 Missense_Mutation p.S171L 0.41 tolerated(0.2) benign(0.001) TCGA-2W-A8YY-01 12 125473532 125473532 G A DHX37 Missense_Mutation p.R13C 0.37 deleterious(0) possibly_damaging(0.689) TCGA-2W-A8YY-01 12 125570981 125570981 G A AACS Missense_Mutation p.R155Q 0.31 deleterious(0) possibly_damaging(0.824) TCGA-2W-A8YY-01 12 125621341 125621341 T C AACS Silent p.R604R 0.24 TCGA-2W-A8YY-01 12 12629280 12629280 G A DUSP16 3'UTR 0.53 TCGA-2W-A8YY-01 12 126947290 126947290 C T RP5-944M2.3 RNA 0.48 TCGA-2W-A8YY-01 12 12795017 12795017 C A CREBL2 3'UTR 0.39 TCGA-2W-A8YY-01 12 128900115 128900115 G A TMEM132C Silent p.T308T 0.31 TCGA-2W-A8YY-01 12 129283934 129283934 G A SLC15A4 Silent p.P481P 0.10 TCGA-2W-A8YY-01 12 129299319 129299319 C T SLC15A4 Splice_Site p.X281_splice 0.46 TCGA-2W-A8YY-01 12 129373190 129373190 G A GLT1D1 Missense_Mutation p.R75Q 0.36 tolerated(0.54) benign(0) TCGA-2W-A8YY-01 12 129822361 129822361 C T TMEM132D Missense_Mutation p.A373T 0.19 tolerated(0.53) benign(0.005) TCGA-2W-A8YY-01 12 130185151 130185151 C T TMEM132D Missense_Mutation p.V58I 0.41 tolerated(0.55) benign(0.009) TCGA-2W-A8YY-01 12 13061697 13061697 C T GPRC5A Missense_Mutation p.R172C 0.49 deleterious(0.01) possibly_damaging(0.863) TCGA-2W-A8YY-01 12 130648820 130648820 G A FZD10 Missense_Mutation p.G445R 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 130648917 130648917 C T FZD10 Missense_Mutation p.A477V 0.39 tolerated(0.25) benign(0.003) TCGA-2W-A8YY-01 12 130831536 130831536 G A PIWIL1 Silent p.T194T 0.34 TCGA-2W-A8YY-01 12 130834471 130834471 G T PIWIL1 Missense_Mutation p.A335S 0.45 tolerated(0.76) benign(0.009) TCGA-2W-A8YY-01 12 130855826 130855826 G T PIWIL1 Missense_Mutation p.Q809H 0.22 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 130856262 130856262 G A PIWIL1 3'UTR 0.58 TCGA-2W-A8YY-01 12 130926404 130926404 G A RIMBP2 Missense_Mutation p.T481M 0.30 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 130929702 130929702 G T RIMBP2 Intron 0.50 TCGA-2W-A8YY-01 12 130935855 130935855 G A RIMBP2 Missense_Mutation p.A113V 0.37 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 12 130963467 130963467 A C RIMBP2 Missense_Mutation p.L31R 0.08 tolerated(0.17) benign(0.016) TCGA-2W-A8YY-01 12 13102469 13102469 C T GPRC5D Missense_Mutation p.A284T 0.42 tolerated(0.48) benign(0.001) TCGA-2W-A8YY-01 12 131274154 131274154 T C STX2 3'Flank 0.34 TCGA-2W-A8YY-01 12 131590393 131590393 C T GPR133 Missense_Mutation p.R624C 0.36 tolerated(0.22) benign(0.008) TCGA-2W-A8YY-01 12 131616291 131616291 G A GPR133 Missense_Mutation p.A733T 0.36 tolerated(0.21) benign(0.124) TCGA-2W-A8YY-01 12 132199457 132199457 C T SFSWAP Missense_Mutation p.P160L 0.43 deleterious(0.01) probably_damaging(0.96) TCGA-2W-A8YY-01 12 132237711 132237711 C T SFSWAP Silent p.D375D 0.43 TCGA-2W-A8YY-01 12 132237879 132237879 C T SFSWAP Silent p.S431S 0.34 TCGA-2W-A8YY-01 12 132262735 132262736 - A SFSWAP Frame_Shift_Ins p.K759Efs*25 0.28 TCGA-2W-A8YY-01 12 132262781 132262781 C T SFSWAP Missense_Mutation p.P772S 0.43 tolerated_low_confidence(0.13) possibly_damaging(0.803) TCGA-2W-A8YY-01 12 132334477 132334477 C T MMP17 Silent p.F445F 0.32 TCGA-2W-A8YY-01 12 132334585 132334585 C T MMP17 Silent p.D481D 0.38 TCGA-2W-A8YY-01 12 13237672 13237672 G A GSG1 3'Flank 0.25 TCGA-2W-A8YY-01 12 132401014 132401014 C T ULK1 Silent p.G650G 0.38 TCGA-2W-A8YY-01 12 132401112 132401112 A G ULK1 Missense_Mutation p.E683G 0.37 tolerated(0.13) benign(0.146) TCGA-2W-A8YY-01 12 132407208 132407208 G A ULK1 3'UTR 0.44 TCGA-2W-A8YY-01 12 132445358 132445358 G A EP400 Missense_Mutation p.S65N 0.10 unknown(0) TCGA-2W-A8YY-01 12 132472277 132472277 G A EP400 Missense_Mutation p.E751K 0.08 unknown(0) TCGA-2W-A8YY-01 12 132504643 132504643 G T EP400 Missense_Mutation p.A1443S 0.41 unknown(0) TCGA-2W-A8YY-01 12 132514360 132514360 C T EP400 Silent p.H1832H 0.45 TCGA-2W-A8YY-01 12 132514674 132514674 G A EP400 Missense_Mutation p.D1909N 0.51 unknown(0) TCGA-2W-A8YY-01 12 13256441 13256441 G A GSG1 Silent p.S2S 0.45 TCGA-2W-A8YY-01 12 132606104 132606104 C T RP13-977J11.5 3'Flank 0.50 TCGA-2W-A8YY-01 12 132625896 132625896 C T DDX51 Missense_Mutation p.A392T 0.45 tolerated(0.1) benign(0.234) TCGA-2W-A8YY-01 12 132626084 132626084 C T DDX51 Missense_Mutation p.D355N 0.33 tolerated(0.73) benign(0.006) TCGA-2W-A8YY-01 12 132626101 132626101 C T DDX51 Missense_Mutation p.R349H 0.12 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 132630169 132630169 C T NOC4L Missense_Mutation p.R102C 0.33 tolerated(0.24) benign(0.002) TCGA-2W-A8YY-01 12 132837611 132837611 C T GALNT9 Silent p.A228A 0.46 TCGA-2W-A8YY-01 12 132852887 132852887 G A RP13-895J2.2 RNA 0.43 TCGA-2W-A8YY-01 12 132862834 132862834 A G GALNT9 Splice_Site p.X140_splice 0.25 TCGA-2W-A8YY-01 12 132862860 132862860 C T GALNT9 Missense_Mutation p.S132N 0.27 tolerated(0.26) benign(0.003) TCGA-2W-A8YY-01 12 133151083 133151083 C T FBRSL1 Missense_Mutation p.P588L 0.40 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 12 133196160 133196160 G T P2RX2 Missense_Mutation p.E103D 0.31 tolerated(0.06) possibly_damaging(0.673) TCGA-2W-A8YY-01 12 133201355 133201355 C T POLE Silent p.Q2263Q 0.51 TCGA-2W-A8YY-01 12 133202306 133202306 G A POLE Silent p.Y2194Y 0.39 TCGA-2W-A8YY-01 12 133235904 133235904 G A POLE Silent p.P1084P 0.35 TCGA-2W-A8YY-01 12 133237729 133237729 G A POLE Silent p.D962D 0.32 TCGA-2W-A8YY-01 12 133241979 133241979 G A POLE Missense_Mutation p.R793C 0.36 deleterious(0.01) probably_damaging(0.935) TCGA-2W-A8YY-01 12 133244146 133244146 G A POLE Silent p.Y754Y 0.36 TCGA-2W-A8YY-01 12 133245474 133245474 G A POLE Missense_Mutation p.R616C 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 133250289 133250289 C A POLE Missense_Mutation p.V411L 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 133253989 133253989 G A POLE Missense_Mutation p.P254L 0.55 deleterious(0.03) benign(0.125) TCGA-2W-A8YY-01 12 133257208 133257208 G A POLE Silent p.D90D 0.32 TCGA-2W-A8YY-01 12 133306335 133306335 G A ANKLE2 Missense_Mutation p.P805S 0.41 tolerated(0.47) benign(0.043) TCGA-2W-A8YY-01 12 133327393 133327393 G A ANKLE2 Missense_Mutation p.A228V 0.28 tolerated(0.08) probably_damaging(0.998) TCGA-2W-A8YY-01 12 133363283 133363283 G A GOLGA3 Missense_Mutation p.R968W 0.21 deleterious(0.01) possibly_damaging(0.84) TCGA-2W-A8YY-01 12 133378493 133378493 G A GOLGA3 Missense_Mutation p.R554W 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 133384558 133384558 T C GOLGA3 Missense_Mutation p.Q366R 0.15 tolerated_low_confidence(0.08) benign(0.05) TCGA-2W-A8YY-01 12 133384710 133384710 G A GOLGA3 Silent p.S315S 0.38 TCGA-2W-A8YY-01 12 133393316 133393316 C T GOLGA3 Silent p.T72T 0.08 TCGA-2W-A8YY-01 12 133435659 133435659 G A CHFR Silent p.C314C 0.46 TCGA-2W-A8YY-01 12 133438075 133438075 G A CHFR Silent p.P255P 0.29 TCGA-2W-A8YY-01 12 133779086 133779086 G A ZNF268 Missense_Mutation p.G272S 0.26 deleterious(0.01) benign(0.166) TCGA-2W-A8YY-01 12 133810821 133810821 G T ANHX Missense_Mutation p.P41H 0.37 tolerated(0.11) benign(0.229) TCGA-2W-A8YY-01 12 13715885 13715885 C T GRIN2B Silent p.P1429P 0.24 TCGA-2W-A8YY-01 12 13716065 13716065 G A GRIN2B Silent p.G1369G 0.21 TCGA-2W-A8YY-01 12 13769402 13769402 G A GRIN2B Missense_Mutation p.R439C 0.45 deleterious(0.05) benign(0.409) TCGA-2W-A8YY-01 12 14576748 14576748 C A ATF7IP Intron 0.35 TCGA-2W-A8YY-01 12 14576880 14576880 G A ATF7IP Missense_Mutation p.V11I 0.47 tolerated_low_confidence(0.08) possibly_damaging(0.559) TCGA-2W-A8YY-01 12 14577965 14577965 G T ATF7IP Missense_Mutation p.E372D 0.56 tolerated_low_confidence(0.1) benign(0.388) TCGA-2W-A8YY-01 12 14634153 14634153 A G ATF7IP Intron 0.36 TCGA-2W-A8YY-01 12 14651187 14651187 C A ATF7IP 3'UTR 0.37 TCGA-2W-A8YY-01 12 14664554 14664554 T C PLBD1 Silent p.L312L 0.35 TCGA-2W-A8YY-01 12 14769629 14769629 C T GUCY2C Missense_Mutation p.A970T 0.27 tolerated(0.51) benign(0.008) TCGA-2W-A8YY-01 12 14778829 14778829 T - GUCY2C Frame_Shift_Del p.N757Mfs*8 0.08 TCGA-2W-A8YY-01 12 14929773 14929773 A C H2AFJ 3'UTR 0.26 TCGA-2W-A8YY-01 12 15038742 15038742 T C MGP 5'UTR 0.24 TCGA-2W-A8YY-01 12 15654781 15654781 C T PTPRO Missense_Mutation p.P297S 0.24 tolerated_low_confidence(0.19) benign(0.064) TCGA-2W-A8YY-01 12 15654839 15654839 T G PTPRO Missense_Mutation p.V316G 0.40 tolerated_low_confidence(0.15) benign(0.001) TCGA-2W-A8YY-01 12 15713129 15713129 G A PTPRO Missense_Mutation p.R877H 0.40 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 15713202 15713202 T C PTPRO Silent p.I901I 0.50 TCGA-2W-A8YY-01 12 15777217 15777217 G A EPS8 Silent p.Y723Y 0.45 TCGA-2W-A8YY-01 12 1599469 1599469 C T ERC1 3'UTR 0.43 TCGA-2W-A8YY-01 12 16036521 16036521 A G STRAP Silent p.G53G 0.49 TCGA-2W-A8YY-01 12 16115789 16115789 G A DERA Missense_Mutation p.R139Q 0.35 deleterious(0) possibly_damaging(0.871) TCGA-2W-A8YY-01 12 16703481 16703481 A T LMO3 3'Flank 0.30 TCGA-2W-A8YY-01 12 1675288 1675288 T G FBXL14 3'UTR 0.39 TCGA-2W-A8YY-01 12 1749023 1749023 G A WNT5B Missense_Mutation p.G168S 0.28 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 12 18443944 18443944 G A PIK3C2G Missense_Mutation p.C306Y 0.21 tolerated(1) benign(0) TCGA-2W-A8YY-01 12 18478034 18478034 T C PIK3C2G Splice_Site p.X424_splice 0.40 TCGA-2W-A8YY-01 12 18801064 18801064 C T PIK3C2G 3'UTR 0.44 TCGA-2W-A8YY-01 12 18836135 18836135 C T PLCZ1 3'UTR 0.43 TCGA-2W-A8YY-01 12 18847936 18847936 A G PLCZ1 Missense_Mutation p.Y457H 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 1889750 1889750 G A ADIPOR2 Nonsense_Mutation p.W199* 0.12 TCGA-2W-A8YY-01 12 1890209 1890209 T C ADIPOR2 Missense_Mutation p.F269L 0.24 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 19410452 19410452 G A PLEKHA5 Missense_Mutation p.R173Q 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-2W-A8YY-01 12 19427794 19427794 G A PLEKHA5 Missense_Mutation p.R397H 0.44 tolerated(0.46) benign(0) TCGA-2W-A8YY-01 12 1945719 1945719 G A LRTM2 3'UTR 0.44 TCGA-2W-A8YY-01 12 19522707 19522707 T G PLEKHA5 Missense_Mutation p.F1279V 0.43 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 12 19646766 19646766 T C AEBP2 Silent p.A340A 0.27 TCGA-2W-A8YY-01 12 19646911 19646911 C T AEBP2 Missense_Mutation p.R389C 0.47 tolerated_low_confidence(0.13) benign(0.006) TCGA-2W-A8YY-01 12 1993987 1993987 C T CACNA2D4 Missense_Mutation p.A407T 0.38 deleterious(0) probably_damaging(0.934) TCGA-2W-A8YY-01 12 1994179 1994179 T G CACNA2D4 Silent p.R378R 0.08 TCGA-2W-A8YY-01 12 20523141 20523141 A G PDE3A Missense_Mutation p.H308R 0.23 tolerated(0.2) benign(0.247) TCGA-2W-A8YY-01 12 2055309 2055309 T C DCP1B 3'UTR 0.14 TCGA-2W-A8YY-01 12 2061592 2061592 G A DCP1B Missense_Mutation p.P505L 0.33 deleterious(0.03) benign(0.033) TCGA-2W-A8YY-01 12 20769205 20769205 T G PDE3A Silent p.V437V 0.37 TCGA-2W-A8YY-01 12 20801633 20801633 T C PDE3A Silent p.Y859Y 0.42 TCGA-2W-A8YY-01 12 20806929 20806929 C T PDE3A Missense_Mutation p.R992C 0.35 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 12 21011481 21011481 C T LST3 Missense_Mutation p.S112F 0.29 deleterious(0) possibly_damaging(0.74) TCGA-2W-A8YY-01 12 21015448 21015448 A G SLCO1B3 Missense_Mutation p.Y195C 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 21392110 21392110 A - SLCO1B1 Frame_Shift_Del p.T689Hfs*? 0.15 TCGA-2W-A8YY-01 12 21428319 21428319 T C SLCO1A2 Silent p.L550L 0.40 TCGA-2W-A8YY-01 12 21453406 21453406 A G SLCO1A2 Silent p.P262P 0.36 TCGA-2W-A8YY-01 12 21598304 21598304 C T PYROXD1 Silent p.F63F 0.32 TCGA-2W-A8YY-01 12 21620476 21620476 C T PYROXD1 Missense_Mutation p.A393V 0.27 tolerated(0.26) benign(0.011) TCGA-2W-A8YY-01 12 21622612 21622612 T G PYROXD1 3'UTR 0.27 TCGA-2W-A8YY-01 12 21668683 21668683 T G GOLT1B 3'UTR 0.36 TCGA-2W-A8YY-01 12 21788422 21788422 G A LDHB 3'UTR 0.32 TCGA-2W-A8YY-01 12 21795056 21795056 T C LDHB Missense_Mutation p.D142G 0.38 deleterious(0.04) benign(0.222) TCGA-2W-A8YY-01 12 21796870 21796870 T C LDHB Silent p.P140P 0.42 TCGA-2W-A8YY-01 12 21799873 21799873 C T LDHB Silent p.G69G 0.42 TCGA-2W-A8YY-01 12 21998745 21998745 T A ABCC9 Missense_Mutation p.E963V 0.26 deleterious(0) benign(0.042) TCGA-2W-A8YY-01 12 22065963 22065963 A G ABCC9 Missense_Mutation p.I285T 0.12 deleterious(0) possibly_damaging(0.601) TCGA-2W-A8YY-01 12 22078946 22078946 G A ABCC9 Silent p.F112F 0.40 TCGA-2W-A8YY-01 12 2224541 2224541 C T CACNA1C Silent p.S67S 0.11 TCGA-2W-A8YY-01 12 2224645 2224645 G A CACNA1C Missense_Mutation p.R102Q 0.39 deleterious(0.01) probably_damaging(0.973) TCGA-2W-A8YY-01 12 22601704 22601704 C T C2CD5 3'UTR 0.33 TCGA-2W-A8YY-01 12 22622712 22622712 C T C2CD5 Missense_Mutation p.E822K 0.37 tolerated(0.07) benign(0.004) TCGA-2W-A8YY-01 12 22665582 22665582 C T C2CD5 Intron 0.52 TCGA-2W-A8YY-01 12 22697176 22697176 C T C2CD5 Intron 0.38 TCGA-2W-A8YY-01 12 22697450 22697450 C A C2CD5 5'UTR 0.40 TCGA-2W-A8YY-01 12 22797278 22797278 G A ETNK1 Intron 0.16 TCGA-2W-A8YY-01 12 22839096 22839096 T C ETNK1 3'UTR 0.36 TCGA-2W-A8YY-01 12 22840218 22840218 G A ETNK1 3'UTR 0.33 TCGA-2W-A8YY-01 12 23893966 23893966 G A SOX5 Silent p.P192P 0.29 TCGA-2W-A8YY-01 12 247931 247931 G A IQSEC3 Missense_Mutation p.A468T 0.39 tolerated(0.4) benign(0.002) TCGA-2W-A8YY-01 12 25254190 25254190 G A LRMP Missense_Mutation p.A274T 0.42 tolerated(0.09) possibly_damaging(0.723) TCGA-2W-A8YY-01 12 2558185 2558185 C T CACNA1C Missense_Mutation p.A174V 0.08 deleterious(0.02) benign(0.236) TCGA-2W-A8YY-01 12 2595358 2595358 C T CACNA1C Silent p.Y282Y 0.50 TCGA-2W-A8YY-01 12 2613703 2613703 C T CACNA1C Intron 0.41 TCGA-2W-A8YY-01 12 26217625 26217625 A G RASSF8 Missense_Mutation p.T100A 0.24 tolerated(0.21) probably_damaging(0.956) TCGA-2W-A8YY-01 12 26218104 26218104 G T RASSF8 Missense_Mutation p.K259N 0.36 tolerated(0.45) benign(0.001) TCGA-2W-A8YY-01 12 26218280 26218280 C T RASSF8 Missense_Mutation p.A318V 0.36 deleterious(0.03) probably_damaging(0.978) TCGA-2W-A8YY-01 12 26277661 26277661 C A BHLHE41 Missense_Mutation p.D18Y 0.42 deleterious(0) probably_damaging(0.972) TCGA-2W-A8YY-01 12 26596475 26596475 C A ITPR2 Splice_Site p.X2150_splice 0.25 TCGA-2W-A8YY-01 12 266295 266295 G A IQSEC3 Missense_Mutation p.R753Q 0.31 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 12 26639127 26639127 C T ITPR2 Silent p.E1907E 0.35 TCGA-2W-A8YY-01 12 2666122 2666122 G A CACNA1C Missense_Mutation p.R496Q 0.36 tolerated(0.2) benign(0.392) TCGA-2W-A8YY-01 12 27066938 27066938 T C ASUN Missense_Mutation p.T515A 0.38 tolerated(0.15) benign(0.1) TCGA-2W-A8YY-01 12 27118168 27118168 G T FGFR1OP2 3'UTR 0.41 TCGA-2W-A8YY-01 12 27118275 27118275 C T FGFR1OP2 3'UTR 0.54 TCGA-2W-A8YY-01 12 27126976 27126976 G T TM7SF3 Silent p.L545L 0.10 TCGA-2W-A8YY-01 12 27235146 27235146 C T C12orf71 Missense_Mutation p.A91T 0.35 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 12 27235438 27235438 C A C12orf71 5'UTR 0.30 TCGA-2W-A8YY-01 12 27540192 27540192 G A ARNTL2 Missense_Mutation p.C199Y 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 2778153 2778153 G A CACNA1C Missense_Mutation p.A1608T 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 2800746 2800746 T C CACNA1C 3'Flank 0.20 TCGA-2W-A8YY-01 12 2909599 2909599 C A FKBP4 Silent p.I296I 0.23 TCGA-2W-A8YY-01 12 29446251 29446251 G A FAR2 Missense_Mutation p.E70K 0.40 tolerated(0.27) possibly_damaging(0.856) TCGA-2W-A8YY-01 12 29470737 29470737 A G FAR2 Intron 0.37 TCGA-2W-A8YY-01 12 29494034 29494035 - A ERGIC2 3'UTR 0.36 TCGA-2W-A8YY-01 12 29607810 29607810 G A OVCH1 Missense_Mutation p.P832S 0.38 tolerated(0.08) possibly_damaging(0.906) TCGA-2W-A8YY-01 12 29628007 29628007 G A OVCH1 Silent p.T529T 0.33 TCGA-2W-A8YY-01 12 29630324 29630324 C A OVCH1 Missense_Mutation p.S399I 0.31 deleterious(0.03) benign(0.02) TCGA-2W-A8YY-01 12 29650591 29650591 A G OVCH1 Missense_Mutation p.L10S 0.33 tolerated_low_confidence(0.11) unknown(0) TCGA-2W-A8YY-01 12 2968260 2968260 C T FOXM1 Silent p.P650P 0.49 TCGA-2W-A8YY-01 12 2968468 2968468 C T FOXM1 Missense_Mutation p.R581Q 0.43 deleterious(0.03) possibly_damaging(0.46) TCGA-2W-A8YY-01 12 2968626 2968626 C T FOXM1 Silent p.P528P 0.30 TCGA-2W-A8YY-01 12 3047451 3047451 C T TULP3 Missense_Mutation p.P399S 0.30 deleterious(0.04) benign(0.073) TCGA-2W-A8YY-01 12 3048600 3048600 C T TULP3 Intron 0.29 TCGA-2W-A8YY-01 12 30827667 30827667 C T IPO8 Silent p.E250E 0.35 TCGA-2W-A8YY-01 12 3104038 3104038 G A TEAD4 Missense_Mutation p.D36N 0.52 tolerated(0.08) benign(0.013) TCGA-2W-A8YY-01 12 31244796 31244796 C T DDX11 Silent p.S411S 0.33 TCGA-2W-A8YY-01 12 31478329 31478329 C T AC024940.1 3'UTR 0.32 TCGA-2W-A8YY-01 12 32446991 32446991 C T BICD1 Missense_Mutation p.R164W 0.11 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 32734916 32734916 T C FGD4 Silent p.L39L 0.47 TCGA-2W-A8YY-01 12 3310358 3310358 A G TSPAN9 5'UTR 0.46 TCGA-2W-A8YY-01 12 3392571 3392571 G A TSPAN9 3'UTR 0.37 TCGA-2W-A8YY-01 12 3392829 3392829 C T TSPAN9 3'UTR 0.35 TCGA-2W-A8YY-01 12 3407227 3407227 G A RP5-1063M23.1 RNA 0.57 TCGA-2W-A8YY-01 12 3407323 3407323 T C RP5-1063M23.1 RNA 0.50 TCGA-2W-A8YY-01 12 34179396 34179396 G T ALG10 Missense_Mutation p.R323I 0.31 tolerated(0.4) benign(0.027) TCGA-2W-A8YY-01 12 3742800 3742800 G A EFCAB4B Missense_Mutation p.R569W 0.31 deleterious(0) possibly_damaging(0.843) TCGA-2W-A8YY-01 12 38714861 38714861 T C ALG10B Missense_Mutation p.V423A 0.30 deleterious(0) benign(0.142) TCGA-2W-A8YY-01 12 393043 393043 A G KDM5A 3'UTR 0.45 TCGA-2W-A8YY-01 12 393600 393600 C T KDM5A 3'UTR 0.34 TCGA-2W-A8YY-01 12 394472 394472 G A KDM5A 3'UTR 0.42 TCGA-2W-A8YY-01 12 39701472 39701472 G A KIF21A Missense_Mutation p.A1446V 0.31 deleterious(0.02) benign(0.04) TCGA-2W-A8YY-01 12 39711918 39711918 G A KIF21A Missense_Mutation p.R1289C 0.34 tolerated(0.05) possibly_damaging(0.849) TCGA-2W-A8YY-01 12 39740280 39740280 C T KIF21A Missense_Mutation p.R567Q 0.41 tolerated(0.62) benign(0.001) TCGA-2W-A8YY-01 12 40037709 40037709 G T C12orf40 Missense_Mutation p.K64N 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-2W-A8YY-01 12 40258584 40258584 G A SLC2A13 Silent p.N433N 0.36 TCGA-2W-A8YY-01 12 40637421 40637421 C A LRRK2 Missense_Mutation p.A259E 0.43 tolerated(0.11) benign(0.021) TCGA-2W-A8YY-01 12 40702979 40702979 C T LRRK2 Missense_Mutation p.L1421F 0.54 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 12 40919340 40919340 T A MUC19 Intron 0.42 TCGA-2W-A8YY-01 12 40939159 40939159 C T MUC19 3'UTR 0.21 TCGA-2W-A8YY-01 12 42707696 42707696 A G ZCRB1 Silent p.A142A 0.43 TCGA-2W-A8YY-01 12 42729687 42729687 G A PPHLN1 Intron 0.39 TCGA-2W-A8YY-01 12 42729721 42729721 G A PPHLN1 Missense_Mutation p.R6Q 0.29 tolerated(0.08) probably_damaging(0.998) TCGA-2W-A8YY-01 12 42842190 42842190 T C PPHLN1 3'Flank 0.50 TCGA-2W-A8YY-01 12 42858760 42858760 T C PRICKLE1 Missense_Mutation p.K359R 0.24 tolerated(0.35) benign(0.039) TCGA-2W-A8YY-01 12 42860125 42860125 A T PRICKLE1 Missense_Mutation p.F216I 0.33 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 12 43750389 43750389 T C ADAMTS20 Silent p.G1847G 0.14 TCGA-2W-A8YY-01 12 43770347 43770347 T - ADAMTS20 Frame_Shift_Del p.K1702Rfs*19 0.28 TCGA-2W-A8YY-01 12 43792981 43792981 T C ADAMTS20 Missense_Mutation p.Q1447R 0.32 tolerated(0.51) benign(0.012) TCGA-2W-A8YY-01 12 43846462 43846462 C T ADAMTS20 Silent p.R599R 0.36 TCGA-2W-A8YY-01 12 4409583 4409583 T C CCND2 3'UTR 0.36 TCGA-2W-A8YY-01 12 4409879 4409879 T C CCND2 3'UTR 0.38 TCGA-2W-A8YY-01 12 4410571 4410571 G A CCND2 3'UTR 0.10 TCGA-2W-A8YY-01 12 44165129 44165129 C T IRAK4 Nonsense_Mutation p.Q90* 0.33 TCGA-2W-A8YY-01 12 44180581 44180582 - T IRAK4 3'UTR 0.35 TCGA-2W-A8YY-01 12 44180624 44180624 G A IRAK4 3'UTR 0.55 TCGA-2W-A8YY-01 12 45108433 45108433 C T NELL2 Silent p.K412K 0.26 TCGA-2W-A8YY-01 12 45429866 45429866 C T DBX2 Silent p.P145P 0.10 TCGA-2W-A8YY-01 12 4543367 4543367 T C FGF6 3'UTR 0.41 TCGA-2W-A8YY-01 12 45568415 45568415 A G PLEKHA8P1 RNA 0.46 TCGA-2W-A8YY-01 12 45810604 45810604 C T ANO6 Missense_Mutation p.R733C 0.35 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 12 4599003 4599003 T C C12orf4 Silent p.S543S 0.52 TCGA-2W-A8YY-01 12 4628037 4628037 A G C12orf4 Silent p.I246I 0.40 TCGA-2W-A8YY-01 12 46299285 46299285 C T ARID2 3'UTR 0.25 TCGA-2W-A8YY-01 12 46342230 46342230 T G SCAF11 Missense_Mutation p.S130R 0.31 tolerated(0.18) benign(0.003) TCGA-2W-A8YY-01 12 4645183 4645184 - T C12orf4 Frame_Shift_Ins p.D60Rfs*19 0.24 TCGA-2W-A8YY-01 12 4645224 4645224 C T C12orf4 Missense_Mutation p.R46H 0.42 deleterious(0) possibly_damaging(0.608) TCGA-2W-A8YY-01 12 46754517 46754517 T - SLC38A2 3'UTR 0.10 TCGA-2W-A8YY-01 12 4708330 4708330 C T DYRK4 Missense_Mutation p.P233S 0.32 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 12 4708907 4708907 C T DYRK4 Missense_Mutation p.S245F 0.24 deleterious(0) probably_damaging(0.93) TCGA-2W-A8YY-01 12 4736387 4736387 C T AKAP3 Missense_Mutation p.A561T 0.50 tolerated(0.38) benign(0.026) TCGA-2W-A8YY-01 12 4763547 4763547 G A NDUFA9 Missense_Mutation p.G47R 0.43 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 12 48061634 48061634 G A RPAP3 Nonsense_Mutation p.Q572* 0.37 TCGA-2W-A8YY-01 12 48110149 48110149 C T ENDOU Missense_Mutation p.A229T 0.26 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 12 48133975 48133975 C T RAPGEF3 Splice_Site p.X775_splice 0.10 TCGA-2W-A8YY-01 12 48145600 48145600 G A RAPGEF3 Missense_Mutation p.R96W 0.39 deleterious(0) possibly_damaging(0.677) TCGA-2W-A8YY-01 12 48172923 48172923 C T SLC48A1 Silent p.A83A 0.52 TCGA-2W-A8YY-01 12 48179606 48179606 C T HDAC7 Missense_Mutation p.E879K 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 48185748 48185748 G A HDAC7 Missense_Mutation p.S573F 0.27 deleterious(0.01) possibly_damaging(0.883) TCGA-2W-A8YY-01 12 48272677 48272677 G T VDR Intron 0.44 TCGA-2W-A8YY-01 12 4835873 4835873 C T GALNT8 Silent p.G129G 0.08 TCGA-2W-A8YY-01 12 4835937 4835937 G A GALNT8 Missense_Mutation p.A151T 0.27 deleterious(0.05) benign(0.054) TCGA-2W-A8YY-01 12 48366811 48366811 T G COL2A1 3'UTR 0.38 TCGA-2W-A8YY-01 12 48372179 48372179 A G COL2A1 Silent p.G966G 0.33 TCGA-2W-A8YY-01 12 48377498 48377498 C T COL2A1 Missense_Mutation p.E655K 0.53 benign(0.364) TCGA-2W-A8YY-01 12 48458951 48458951 C T SENP1 Missense_Mutation p.R391H 0.44 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 4853732 4853732 G T GALNT8 Missense_Mutation p.K242N 0.13 tolerated(0.16) benign(0.109) TCGA-2W-A8YY-01 12 48538996 48538996 G A PFKM Missense_Mutation p.R770Q 0.42 tolerated(0.09) benign(0.022) TCGA-2W-A8YY-01 12 48543244 48543244 C T ASB8 Missense_Mutation p.V258M 0.13 deleterious(0) benign(0.273) TCGA-2W-A8YY-01 12 48736822 48736822 C T ZNF641 Silent p.R417R 0.28 TCGA-2W-A8YY-01 12 48737045 48737045 G C ZNF641 Missense_Mutation p.A343G 0.43 tolerated(0.11) benign(0.13) TCGA-2W-A8YY-01 12 48737275 48737275 G A ZNF641 Silent p.C266C 0.50 TCGA-2W-A8YY-01 12 48888663 48888663 C A C12orf54 Missense_Mutation p.R109S 0.59 tolerated(0.64) benign(0.014) TCGA-2W-A8YY-01 12 49062971 49062971 C T KANSL2 Missense_Mutation p.R265H 0.35 tolerated(0.73) benign(0.01) TCGA-2W-A8YY-01 12 49087011 49087011 A G CCNT1 Silent p.N662N 0.45 TCGA-2W-A8YY-01 12 49087044 49087044 C T CCNT1 Silent p.T651T 0.48 TCGA-2W-A8YY-01 12 49108266 49108266 C T CCNT1 Missense_Mutation p.R68Q 0.18 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 49161068 49161068 C T ADCY6 3'UTR 0.41 TCGA-2W-A8YY-01 12 49176607 49176607 C T ADCY6 Missense_Mutation p.R204H 0.37 tolerated(1) benign(0) TCGA-2W-A8YY-01 12 4919375 4919375 G A KCNA6 Silent p.L56L 0.47 TCGA-2W-A8YY-01 12 4919470 4919470 G A KCNA6 Missense_Mutation p.R88H 0.41 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 12 4919771 4919771 A G KCNA6 Missense_Mutation p.I188M 0.33 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 12 49218085 49218085 C T CACNB3 Silent p.G112G 0.10 TCGA-2W-A8YY-01 12 49360217 49360217 C T WNT10B Silent p.E277E 0.42 TCGA-2W-A8YY-01 12 49391735 49391735 C T DDN Silent p.E308E 0.29 TCGA-2W-A8YY-01 12 49413789 49413789 G T KMT2D 3'UTR 0.34 TCGA-2W-A8YY-01 12 49415580 49415580 G A KMT2D Missense_Mutation p.R5533W 0.39 unknown(0) TCGA-2W-A8YY-01 12 49420063 49420063 C T KMT2D Missense_Mutation p.R5229H 0.35 unknown(0) TCGA-2W-A8YY-01 12 49421039 49421039 G A KMT2D Nonsense_Mutation p.R4904* 0.37 TCGA-2W-A8YY-01 12 49431002 49431002 C T KMT2D Silent p.Q3379Q 0.39 TCGA-2W-A8YY-01 12 49436917 49436917 C T KMT2D Silent p.K1862K 0.08 TCGA-2W-A8YY-01 12 49436953 49436953 G A KMT2D Silent p.G1850G 0.44 TCGA-2W-A8YY-01 12 49444688 49444688 C T KMT2D Silent p.S926S 0.40 TCGA-2W-A8YY-01 12 49458684 49458684 G A RHEBL1 3'UTR 0.12 TCGA-2W-A8YY-01 12 49491751 49491751 G A LMBR1L Missense_Mutation p.R460W 0.59 deleterious(0) possibly_damaging(0.794) TCGA-2W-A8YY-01 12 49498544 49498544 C T LMBR1L Missense_Mutation p.G106S 0.38 tolerated(0.59) probably_damaging(0.91) TCGA-2W-A8YY-01 12 495088 495088 C A KDM5A Missense_Mutation p.R73I 0.27 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 12 495126 495126 T C KDM5A Silent p.P60P 0.47 TCGA-2W-A8YY-01 12 49522710 49522710 G A TUBA1B Silent p.C129C 0.44 TCGA-2W-A8YY-01 12 49580217 49580217 C T TUBA1A Missense_Mutation p.R84H 0.37 deleterious_low_confidence(0.02) benign(0.012) TCGA-2W-A8YY-01 12 49690737 49690737 G A PRPH Silent p.T256T 0.27 TCGA-2W-A8YY-01 12 49724485 49724485 C T TROAP Silent p.P619P 0.42 TCGA-2W-A8YY-01 12 49729833 49729833 C T C1QL4 Missense_Mutation p.S143N 0.12 deleterious(0.01) possibly_damaging(0.491) TCGA-2W-A8YY-01 12 49942823 49942823 C T KCNH3 Silent p.G445G 0.33 TCGA-2W-A8YY-01 12 49982236 49982236 C T FAM186B Splice_Site p.X845_splice 0.48 TCGA-2W-A8YY-01 12 50026808 50026808 G A PRPF40B Nonsense_Mutation p.W120* 0.42 TCGA-2W-A8YY-01 12 50041506 50041506 G A FMNL3 Nonsense_Mutation p.R920* 0.40 TCGA-2W-A8YY-01 12 50050932 50050932 C T FMNL3 Missense_Mutation p.R216H 0.33 deleterious(0.05) probably_damaging(0.956) TCGA-2W-A8YY-01 12 50189416 50189416 G C NCKAP5L Missense_Mutation p.L743V 0.34 tolerated(0.51) benign(0.018) TCGA-2W-A8YY-01 12 50196938 50196938 G A NCKAP5L Missense_Mutation p.S45L 0.12 tolerated(0.08) benign(0.104) TCGA-2W-A8YY-01 12 5021602 5021602 A G KCNA1 Missense_Mutation p.E353G 0.50 tolerated(0.23) benign(0.003) TCGA-2W-A8YY-01 12 5024242 5024242 G A KCNA1 3'UTR 0.57 TCGA-2W-A8YY-01 12 5025661 5025661 G A KCNA1 3'UTR 0.38 TCGA-2W-A8YY-01 12 50367155 50367155 G T AQP6 Missense_Mutation p.A67S 0.39 deleterious(0.03) probably_damaging(0.989) TCGA-2W-A8YY-01 12 50452661 50452661 C T ASIC1 Missense_Mutation p.R38W 0.43 deleterious(0.04) possibly_damaging(0.827) TCGA-2W-A8YY-01 12 50452783 50452783 C T ASIC1 Silent p.D78D 0.47 TCGA-2W-A8YY-01 12 50477327 50477327 G A ASIC1 3'UTR 0.51 TCGA-2W-A8YY-01 12 50504107 50504107 G A GPD1 3'UTR 0.39 TCGA-2W-A8YY-01 12 50570504 50570504 T C LIMA1 3'UTR 0.35 TCGA-2W-A8YY-01 12 50570517 50570517 C T LIMA1 3'UTR 0.33 TCGA-2W-A8YY-01 12 50586312 50586312 G A LIMA1 Missense_Mutation p.P356S 0.51 tolerated(0.3) benign(0.009) TCGA-2W-A8YY-01 12 50856384 50856384 C T LARP4 Nonsense_Mutation p.R452* 0.40 TCGA-2W-A8YY-01 12 50867286 50867286 G A LARP4 Missense_Mutation p.S545N 0.30 tolerated(0.11) benign(0.197) TCGA-2W-A8YY-01 12 50870528 50870528 C T LARP4 3'UTR 0.45 TCGA-2W-A8YY-01 12 51141736 51141736 G T DIP2B 3'UTR 0.38 TCGA-2W-A8YY-01 12 51252570 51252570 A G TMPRSS12 Missense_Mutation p.D129G 0.50 deleterious(0.02) benign(0.024) TCGA-2W-A8YY-01 12 51398635 51398635 G A SLC11A2 Missense_Mutation p.A151V 0.33 deleterious(0) probably_damaging(0.918) TCGA-2W-A8YY-01 12 51457434 51457434 G T CSRNP2 3'UTR 0.37 TCGA-2W-A8YY-01 12 51495740 51495740 G A TFCP2 Missense_Mutation p.L377F 0.17 deleterious(0.02) probably_damaging(0.988) TCGA-2W-A8YY-01 12 51501100 51501100 C T TFCP2 Silent p.T249T 0.39 TCGA-2W-A8YY-01 12 5154858 5154858 C T KCNA5 Silent p.I515I 0.36 TCGA-2W-A8YY-01 12 5155010 5155010 C T KCNA5 Missense_Mutation p.A566V 0.30 tolerated_low_confidence(0.15) benign(0.002) TCGA-2W-A8YY-01 12 51598095 51598095 G A POU6F1 5'UTR 0.34 TCGA-2W-A8YY-01 12 51637309 51637309 A C DAZAP2 3'Flank 0.42 TCGA-2W-A8YY-01 12 51639331 51639331 T C SMAGP 3'UTR 0.26 TCGA-2W-A8YY-01 12 51865113 51865113 A T SLC4A8 Silent p.G567G 0.30 TCGA-2W-A8YY-01 12 52168072 52168072 C A SCN8A Missense_Mutation p.L1249I 0.49 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 12 52200146 52200146 C T SCN8A Missense_Mutation p.R1626C 0.12 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 12 52200945 52200945 G A SCN8A Missense_Mutation p.R1892H 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-2W-A8YY-01 12 52309237 52309237 G A ACVRL1 Missense_Mutation p.R334H 0.45 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 12 52380962 52380962 C T ACVR1B Intron 0.38 TCGA-2W-A8YY-01 12 52387870 52387870 C T ACVR1B Silent p.S539S 0.46 TCGA-2W-A8YY-01 12 52388933 52388933 C T ACVR1B 3'Flank 0.30 TCGA-2W-A8YY-01 12 52403022 52403022 C T GRASP Missense_Mutation p.R99W 0.22 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 52451148 52451148 C T NR4A1 Silent p.G471G 0.29 TCGA-2W-A8YY-01 12 52501826 52501826 A G AC078864.1 3'Flank 0.25 TCGA-2W-A8YY-01 12 52567468 52567468 G A KRT80 Silent p.S249S 0.32 TCGA-2W-A8YY-01 12 52585404 52585404 C T KRT80 Missense_Mutation p.A95T 0.28 deleterious(0.01) benign(0.301) TCGA-2W-A8YY-01 12 52631316 52631316 G A KRT7 Missense_Mutation p.R187H 0.48 deleterious(0.02) benign(0.081) TCGA-2W-A8YY-01 12 52635363 52635363 G T KRT7 Missense_Mutation p.Q267H 0.33 deleterious(0.01) benign(0.093) TCGA-2W-A8YY-01 12 52647529 52647529 C T KRT7 3'Flank 0.26 TCGA-2W-A8YY-01 12 52648127 52648127 G A KRT121P RNA 0.50 TCGA-2W-A8YY-01 12 52648150 52648150 T C KRT121P Splice_Site 0.36 TCGA-2W-A8YY-01 12 52711552 52711552 G A KRT83 Silent p.D221D 0.31 TCGA-2W-A8YY-01 12 52793814 52793814 G A KRT82 Silent p.I299I 0.36 TCGA-2W-A8YY-01 12 52797516 52797516 G T KRT82 Missense_Mutation p.L197I 0.55 tolerated(0.09) benign(0.009) TCGA-2W-A8YY-01 12 52799858 52799858 G A KRT82 Silent p.A68A 0.47 TCGA-2W-A8YY-01 12 52881499 52881499 G A KRT6A 3'UTR 0.54 TCGA-2W-A8YY-01 12 52883807 52883807 G A KRT6A Missense_Mutation p.R375C 0.09 deleterious(0.01) possibly_damaging(0.478) TCGA-2W-A8YY-01 12 52940108 52940108 G A KRT71 Silent p.I429I 0.40 TCGA-2W-A8YY-01 12 52946439 52946439 G A KRT71 Silent p.F141F 0.37 TCGA-2W-A8YY-01 12 53039165 53039165 C A KRT2 Missense_Mutation p.G520C 0.25 deleterious(0.02) unknown(0) TCGA-2W-A8YY-01 12 53204566 53204566 C T KRT4 Missense_Mutation p.E238K 0.28 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 12 53207602 53207602 C T KRT4 Missense_Mutation p.G81S 0.36 tolerated(0.07) benign(0.067) TCGA-2W-A8YY-01 12 53232772 53232772 T - KRT78 3'UTR 0.38 TCGA-2W-A8YY-01 12 53292500 53292500 C T KRT8 Missense_Mutation p.A417T 0.12 tolerated(0.09) benign(0.026) TCGA-2W-A8YY-01 12 53400066 53400066 A G EIF4B 5'UTR 0.38 TCGA-2W-A8YY-01 12 53412689 53412689 C T EIF4B Missense_Mutation p.R87W 0.15 tolerated(0.06) possibly_damaging(0.689) TCGA-2W-A8YY-01 12 53458452 53458452 G A SPRYD3 3'UTR 0.36 TCGA-2W-A8YY-01 12 53584272 53584272 C A ZNF740 3'UTR 0.45 TCGA-2W-A8YY-01 12 53604663 53604663 A G RARG 3'UTR 0.37 TCGA-2W-A8YY-01 12 53607386 53607386 G A RARG Silent p.F304F 0.31 TCGA-2W-A8YY-01 12 53664173 53664173 C A ESPL1 Silent p.G385G 0.21 TCGA-2W-A8YY-01 12 53675330 53675330 G A ESPL1 Missense_Mutation p.D847N 0.51 tolerated(0.07) benign(0.019) TCGA-2W-A8YY-01 12 53680613 53680613 T - ESPL1 Frame_Shift_Del p.F1365Lfs*29 0.17 TCGA-2W-A8YY-01 12 53701416 53701416 G A AAAS Missense_Mutation p.R500W 0.30 deleterious_low_confidence(0.03) benign(0.006) TCGA-2W-A8YY-01 12 53805641 53805641 C A SP1 3'Flank 0.40 TCGA-2W-A8YY-01 12 53806878 53806878 G A SP1 3'Flank 0.45 TCGA-2W-A8YY-01 12 53810124 53810125 - T SP1 3'Flank 0.16 TCGA-2W-A8YY-01 12 53819586 53819586 A G AMHR2 Silent p.A245A 0.38 TCGA-2W-A8YY-01 12 53875892 53875892 T C MAP3K12 Missense_Mutation p.T805A 0.36 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-2W-A8YY-01 12 54105030 54105030 C - CALCOCO1 3'Flank 0.10 TCGA-2W-A8YY-01 12 54379327 54379327 C T HOXC10 Missense_Mutation p.P95L 0.36 tolerated(0.08) benign(0.123) TCGA-2W-A8YY-01 12 54403042 54403042 G A HOXC8 5'UTR 0.42 TCGA-2W-A8YY-01 12 54403161 54403161 C T HOXC8 Silent p.S31S 0.12 TCGA-2W-A8YY-01 12 54403347 54403347 G A HOXC8 Silent p.A93A 0.25 TCGA-2W-A8YY-01 12 54423443 54423443 C T HOXC6 Silent p.V135V 0.12 TCGA-2W-A8YY-01 12 54447901 54447901 C T HOXC4 Silent p.R65R 0.55 TCGA-2W-A8YY-01 12 54449097 54449097 G T HOXC4 3'UTR 0.55 TCGA-2W-A8YY-01 12 54625137 54625137 C T CBX5 3'UTR 0.31 TCGA-2W-A8YY-01 12 54677742 54677742 C T HNRNPA1 Nonsense_Mutation p.R352* 0.44 TCGA-2W-A8YY-01 12 54686453 54686453 T - NFE2 Frame_Shift_Del p.N276Tfs*26 0.32 TCGA-2W-A8YY-01 12 54687050 54687050 G A NFE2 Missense_Mutation p.P77L 0.35 tolerated(0.3) benign(0.014) TCGA-2W-A8YY-01 12 54744391 54744391 C A COPZ1 3'UTR 0.34 TCGA-2W-A8YY-01 12 54763388 54763388 G A ZNF385A 3'UTR 0.44 TCGA-2W-A8YY-01 12 54763925 54763925 G A ZNF385A 3'UTR 0.37 TCGA-2W-A8YY-01 12 54795831 54795831 C T ITGA5 Missense_Mutation p.R727H 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-2W-A8YY-01 12 55615224 55615224 C T OR10A7 Missense_Mutation p.S139F 0.29 deleterious(0) benign(0.041) TCGA-2W-A8YY-01 12 55641144 55641144 A G OR6C74 Missense_Mutation p.I25V 0.38 tolerated_low_confidence(0.14) benign(0.001) TCGA-2W-A8YY-01 12 55688214 55688214 A G OR6C6 Missense_Mutation p.V268A 0.39 deleterious_low_confidence(0) benign(0.008) TCGA-2W-A8YY-01 12 55846637 55846637 C T OR6C2 Silent p.L214L 0.35 TCGA-2W-A8YY-01 12 55863341 55863341 T C OR6C70 Silent p.E194E 0.43 TCGA-2W-A8YY-01 12 55887058 55887058 T G OR6C68 Missense_Mutation p.F299L 0.38 tolerated_low_confidence(0.08) benign(0.021) TCGA-2W-A8YY-01 12 56075498 56075498 G A METTL7B 5'UTR 0.33 TCGA-2W-A8YY-01 12 56094820 56094820 C T ITGA7 Missense_Mutation p.G178D 0.32 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 12 56119309 56119309 A G CD63 3'UTR 0.41 TCGA-2W-A8YY-01 12 56230768 56230768 G T MMP19 3'UTR 0.78 TCGA-2W-A8YY-01 12 56234539 56234539 G A MMP19 Silent p.F144F 0.49 TCGA-2W-A8YY-01 12 56351096 56351096 C T PMEL Missense_Mutation p.E331K 0.37 tolerated(0.65) benign(0.03) TCGA-2W-A8YY-01 12 56397597 56397597 G A SUOX Missense_Mutation p.V142I 0.29 tolerated(0.34) benign(0.004) TCGA-2W-A8YY-01 12 56415243 56415243 C T IKZF4 5'UTR 0.29 TCGA-2W-A8YY-01 12 56481660 56481660 C T ERBB3 Missense_Mutation p.A232V 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 56491617 56491617 G A ERBB3 Missense_Mutation p.A837T 0.15 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 12 56496142 56496142 C T ERBB3 3'UTR 0.24 TCGA-2W-A8YY-01 12 56531397 56531397 C T ESYT1 Nonsense_Mutation p.R695* 0.27 TCGA-2W-A8YY-01 12 56537690 56537690 G A ESYT1 3'UTR 0.38 TCGA-2W-A8YY-01 12 56551546 56551546 G A MYL6B 3'UTR 0.23 TCGA-2W-A8YY-01 12 56552278 56552278 G A MYL6 Intron 0.43 TCGA-2W-A8YY-01 12 56565490 56565490 C T SMARCC2 Missense_Mutation p.A689T 0.39 deleterious(0) possibly_damaging(0.499) TCGA-2W-A8YY-01 12 56631081 56631081 G A SLC39A5 Missense_Mutation p.G479E 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-2W-A8YY-01 12 56631537 56631537 G A SLC39A5 3'UTR 0.36 TCGA-2W-A8YY-01 12 56662871 56662871 G A COQ10A Missense_Mutation p.V104M 0.37 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 56709808 56709808 G A CNPY2 5'UTR 0.42 TCGA-2W-A8YY-01 12 56722286 56722286 G A PAN2 Missense_Mutation p.A141V 0.45 tolerated(0.33) benign(0.024) TCGA-2W-A8YY-01 12 56755201 56755201 C T APOF Silent p.Q263Q 0.26 TCGA-2W-A8YY-01 12 56847453 56847453 G A MIP Silent p.Y149Y 0.30 TCGA-2W-A8YY-01 12 56848301 56848301 G A MIP Missense_Mutation p.R33C 0.46 deleterious(0.02) probably_damaging(0.926) TCGA-2W-A8YY-01 12 56862822 56862822 G T SPRYD4 Splice_Site p.X29_splice 0.34 TCGA-2W-A8YY-01 12 5687597 5687597 C T ANO2 Missense_Mutation p.R774Q 0.33 deleterious(0) possibly_damaging(0.823) TCGA-2W-A8YY-01 12 56981362 56981362 G A RBMS2 Missense_Mutation p.D326N 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 56982089 56982089 G A RBMS2 Silent p.T358T 0.49 TCGA-2W-A8YY-01 12 57009195 57009195 G A BAZ2A Silent p.L113L 0.09 TCGA-2W-A8YY-01 12 57059834 57059834 A - PTGES3 Intron 0.40 TCGA-2W-A8YY-01 12 57110185 57110185 G T NACA Intron 0.43 TCGA-2W-A8YY-01 12 57114652 57114652 G A NACA Missense_Mutation p.A221V 0.45 deleterious_low_confidence(0.03) benign(0.001) TCGA-2W-A8YY-01 12 57167640 57167640 T C HSD17B6 Missense_Mutation p.W2R 0.22 deleterious(0) possibly_damaging(0.635) TCGA-2W-A8YY-01 12 57178753 57178753 C T HSD17B6 Missense_Mutation p.A230V 0.35 tolerated(0.28) benign(0.008) TCGA-2W-A8YY-01 12 57328002 57328002 T G SDR9C7 Missense_Mutation p.K15T 0.55 deleterious(0) possibly_damaging(0.711) TCGA-2W-A8YY-01 12 57397979 57397979 C T ZBTB39 Silent p.T241T 0.40 TCGA-2W-A8YY-01 12 57430619 57430619 C A MYO1A Missense_Mutation p.K737N 0.47 deleterious(0.01) benign(0.273) TCGA-2W-A8YY-01 12 57454573 57454573 C T TMEM194A Missense_Mutation p.R379Q 0.42 deleterious(0.01) probably_damaging(0.968) TCGA-2W-A8YY-01 12 57486277 57486277 C T NAB2 Missense_Mutation p.T335M 0.40 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 12 57493625 57493625 C T STAT6 Missense_Mutation p.G557R 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 57498554 57498554 C T STAT6 Silent p.E348E 0.49 TCGA-2W-A8YY-01 12 57570936 57570936 C T LRP1 Silent p.I1368I 0.30 TCGA-2W-A8YY-01 12 57570965 57570965 G A LRP1 Missense_Mutation p.R1378Q 0.19 probably_damaging(0.997) TCGA-2W-A8YY-01 12 57571352 57571352 C T LRP1 Missense_Mutation p.R1447C 0.33 probably_damaging(0.994) TCGA-2W-A8YY-01 12 57573610 57573610 A G LRP1 Missense_Mutation p.N1671S 0.52 probably_damaging(0.993) TCGA-2W-A8YY-01 12 57600444 57600444 C T LRP1 Missense_Mutation p.R3927C 0.36 benign(0.003) TCGA-2W-A8YY-01 12 57603882 57603882 C A LRP1 Silent p.T4170T 0.39 TCGA-2W-A8YY-01 12 57604515 57604515 C T LRP1 Missense_Mutation p.R4257W 0.58 probably_damaging(0.965) TCGA-2W-A8YY-01 12 57604635 57604635 G A LRP1 Missense_Mutation p.G4297S 0.26 benign(0.003) TCGA-2W-A8YY-01 12 57606395 57606395 C A LRP1 3'UTR 0.39 TCGA-2W-A8YY-01 12 57619525 57619525 G A NXPH4 Missense_Mutation p.G308R 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-2W-A8YY-01 12 57628916 57628916 C T NDUFA4L2 3'UTR 0.22 TCGA-2W-A8YY-01 12 57864108 57864108 G A GLI1 Missense_Mutation p.V529M 0.30 tolerated(0.49) benign(0.323) TCGA-2W-A8YY-01 12 57870234 57870234 C A ARHGAP9 Missense_Mutation p.K343N 0.28 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 57873594 57873594 G T ARHGAP9 5'UTR 0.29 TCGA-2W-A8YY-01 12 57894225 57894225 T C MARS Missense_Mutation p.C405R 0.30 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 57910065 57910065 T G MARS Missense_Mutation p.V834G 0.50 tolerated(0.27) benign(0) TCGA-2W-A8YY-01 12 57910667 57910667 G A DDIT3 Silent p.I168I 0.32 TCGA-2W-A8YY-01 12 57919920 57919920 G A MBD6 Missense_Mutation p.R390Q 0.51 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 12 57921401 57921401 C - MBD6 Frame_Shift_Del p.Q734Nfs*18 0.31 TCGA-2W-A8YY-01 12 57923314 57923314 G T MBD6 3'UTR 0.33 TCGA-2W-A8YY-01 12 57928127 57928127 G T DCTN2 Missense_Mutation p.L163M 0.48 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 57972051 57972051 G A KIF5A Missense_Mutation p.G822R 0.50 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 57974896 57974896 G A KIF5A Missense_Mutation p.R899H 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 12 57995445 57995445 G A PIP4K2C 3'UTR 0.50 TCGA-2W-A8YY-01 12 58001257 58001257 G A DTX3 Missense_Mutation p.R204H 0.50 deleterious(0.04) benign(0.036) TCGA-2W-A8YY-01 12 58001381 58001381 G A DTX3 Silent p.P245P 0.40 TCGA-2W-A8YY-01 12 58002412 58002412 A G DTX3 Missense_Mutation p.D287G 0.37 deleterious(0.01) benign(0.29) TCGA-2W-A8YY-01 12 58002939 58002939 A G DTX3 3'UTR 0.41 TCGA-2W-A8YY-01 12 58014797 58014797 C T SLC26A10 Silent p.S104S 0.35 TCGA-2W-A8YY-01 12 58018375 58018375 C A SLC26A10 Intron 0.45 TCGA-2W-A8YY-01 12 58023826 58023826 C A B4GALNT1 Intron 0.07 TCGA-2W-A8YY-01 12 58090074 58090074 G A OS9 Missense_Mutation p.R166H 0.42 deleterious(0) benign(0.251) TCGA-2W-A8YY-01 12 58113937 58113937 C T OS9 Silent p.G552G 0.37 TCGA-2W-A8YY-01 12 58114212 58114212 C T OS9 Missense_Mutation p.R597C 0.26 deleterious(0.01) probably_damaging(0.962) TCGA-2W-A8YY-01 12 58121275 58121275 A G AGAP2 Missense_Mutation p.V983A 0.32 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 12 58121550 58121550 C T AGAP2 Missense_Mutation p.R924H 0.21 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 12 58127894 58127894 C A AGAP2 Missense_Mutation p.Q488H 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-2W-A8YY-01 12 58138905 58138905 C A TSPAN31 5'UTR 0.37 TCGA-2W-A8YY-01 12 58139583 58139583 T C TSPAN31 Missense_Mutation p.V40A 0.55 deleterious(0) possibly_damaging(0.676) TCGA-2W-A8YY-01 12 58141884 58141884 C T TSPAN31 3'UTR 0.62 TCGA-2W-A8YY-01 12 58144780 58144780 T G CDK4 Missense_Mutation p.S150R 0.14 tolerated(0.23) benign(0.028) TCGA-2W-A8YY-01 12 58191530 58191530 C A AVIL 3'Flank 0.64 TCGA-2W-A8YY-01 12 58340779 58340779 G A XRCC6BP1 Missense_Mutation p.A79T 0.27 tolerated(0.57) benign(0.034) TCGA-2W-A8YY-01 12 5915250 5915250 C T ANO2 Missense_Mutation p.D316N 0.44 tolerated(0.28) benign(0.02) TCGA-2W-A8YY-01 12 59271575 59271575 C T LRIG3 Missense_Mutation p.V715I 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 12 6125360 6125360 C A VWF Nonsense_Mutation p.E1784* 0.31 TCGA-2W-A8YY-01 12 62785104 62785104 C T USP15 Nonsense_Mutation p.R710* 0.26 TCGA-2W-A8YY-01 12 63225929 63225929 G A PPM1H Missense_Mutation p.P126S 0.22 tolerated(0.12) probably_damaging(0.997) TCGA-2W-A8YY-01 12 63544080 63544080 G A AVPR1A Silent p.F179F 0.30 TCGA-2W-A8YY-01 12 63991635 63991635 G T DPY19L2 Missense_Mutation p.T472N 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 64173902 64173902 C T TMEM5 Silent p.R54R 0.15 TCGA-2W-A8YY-01 12 6439024 6439024 G A TNFRSF1A Missense_Mutation p.A326V 0.40 tolerated(0.5) benign(0.053) TCGA-2W-A8YY-01 12 6442641 6442641 C A TNFRSF1A Missense_Mutation p.D122Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 6451163 6451163 C T TNFRSF1A 5'UTR 0.28 TCGA-2W-A8YY-01 12 6457134 6457134 C T SCNN1A Missense_Mutation p.A698T 0.35 tolerated_low_confidence(0.19) possibly_damaging(0.682) TCGA-2W-A8YY-01 12 64588361 64588361 G A C12orf66 Missense_Mutation p.A200V 0.39 deleterious(0.01) benign(0.169) TCGA-2W-A8YY-01 12 6465023 6465023 G A SCNN1A Missense_Mutation p.P359L 0.33 deleterious(0.01) benign(0.233) TCGA-2W-A8YY-01 12 64823918 64823918 G A XPOT Silent p.P609P 0.35 TCGA-2W-A8YY-01 12 65226009 65226009 G A TBC1D30 Silent p.G173G 0.16 TCGA-2W-A8YY-01 12 65514244 65514244 G A WIF1 Missense_Mutation p.P81S 0.29 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 65563371 65563371 G A LEMD3 5'UTR 0.25 TCGA-2W-A8YY-01 12 65641149 65641149 C A LEMD3 3'UTR 0.10 TCGA-2W-A8YY-01 12 66152339 66152339 C T RPSAP52 RNA 0.39 TCGA-2W-A8YY-01 12 66275738 66275738 G A RP11-366L20.2 Silent p.Y9Y 0.43 TCGA-2W-A8YY-01 12 6634767 6634767 A G NCAPD2 Missense_Mutation p.K745E 0.50 deleterious(0.02) benign(0.074) TCGA-2W-A8YY-01 12 6635644 6635644 C T NCAPD2 Missense_Mutation p.P866L 0.28 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 12 66357328 66357328 G A HMGA2 3'UTR 0.29 TCGA-2W-A8YY-01 12 6638750 6638750 G A NCAPD2 Missense_Mutation p.R1215H 0.42 deleterious(0.01) possibly_damaging(0.466) TCGA-2W-A8YY-01 12 6646123 6646123 G A GAPDH Missense_Mutation p.A92T 0.11 deleterious_low_confidence(0.03) benign(0.022) TCGA-2W-A8YY-01 12 66517686 66517686 C T LLPH Silent p.K108K 0.32 TCGA-2W-A8YY-01 12 66704161 66704161 G A HELB Missense_Mutation p.V485I 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 66725278 66725278 G A HELB Silent p.S1005S 0.33 TCGA-2W-A8YY-01 12 6679253 6679253 T A CHD4 3'UTR 0.29 TCGA-2W-A8YY-01 12 668589 668589 T C B4GALNT3 Splice_Site p.X963_splice 0.35 TCGA-2W-A8YY-01 12 6692028 6692028 C T CHD4 Missense_Mutation p.G1408S 0.65 deleterious(0.02) probably_damaging(0.982) TCGA-2W-A8YY-01 12 66932920 66932920 C T GRIP1 Missense_Mutation p.S119N 0.37 tolerated(0.24) benign(0.026) TCGA-2W-A8YY-01 12 6701911 6701911 G A CHD4 Silent p.L909L 0.35 TCGA-2W-A8YY-01 12 6703789 6703789 C T CHD4 Missense_Mutation p.E717K 0.38 tolerated(0.5) benign(0.003) TCGA-2W-A8YY-01 12 6753656 6753656 C T ACRBP Silent p.Q197Q 0.13 TCGA-2W-A8YY-01 12 6759852 6759852 G A ING4 3'UTR 0.38 TCGA-2W-A8YY-01 12 6760280 6760280 G A ING4 3'UTR 0.30 TCGA-2W-A8YY-01 12 67698914 67698914 G A CAND1 Missense_Mutation p.S489N 0.46 tolerated(0.16) benign(0.091) TCGA-2W-A8YY-01 12 67699383 67699383 G A CAND1 Silent p.R645R 0.33 TCGA-2W-A8YY-01 12 67707708 67707708 C T CAND1 3'UTR 0.40 TCGA-2W-A8YY-01 12 6776898 6776898 C T ZNF384 Silent p.E572E 0.35 TCGA-2W-A8YY-01 12 6778258 6778258 G A ZNF384 Missense_Mutation p.T424M 0.27 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 12 68051053 68051053 G A DYRK2 Silent p.V122V 0.38 TCGA-2W-A8YY-01 12 68052241 68052241 G A DYRK2 Nonsense_Mutation p.W518* 0.36 TCGA-2W-A8YY-01 12 68053565 68053566 - A DYRK2 3'UTR 0.42 TCGA-2W-A8YY-01 12 68054262 68054262 A - DYRK2 3'UTR 0.31 TCGA-2W-A8YY-01 12 68055709 68055709 T C DYRK2 3'UTR 0.29 TCGA-2W-A8YY-01 12 68358 68358 C T RP11-598F7.1 RNA 0.17 TCGA-2W-A8YY-01 12 6838452 6838452 C T COPS7A Missense_Mutation p.R123C 0.08 deleterious(0) possibly_damaging(0.773) TCGA-2W-A8YY-01 12 68549202 68549202 C T IFNG Silent p.S144S 0.31 TCGA-2W-A8YY-01 12 68595645 68595645 A T IL26 Missense_Mutation p.L166I 0.41 deleterious(0.02) benign(0.119) TCGA-2W-A8YY-01 12 68707253 68707253 A G MDM1 Silent p.C563C 0.40 TCGA-2W-A8YY-01 12 68719884 68719884 A G MDM1 Intron 0.42 TCGA-2W-A8YY-01 12 68721146 68721146 C T MDM1 Intron 0.40 TCGA-2W-A8YY-01 12 6879376 6879376 G A PTMS Missense_Mutation p.E84K 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-2W-A8YY-01 12 6880105 6880105 G A PTMS 3'UTR 0.33 TCGA-2W-A8YY-01 12 6887526 6887526 C T LAG3 Silent p.P516P 0.46 TCGA-2W-A8YY-01 12 69042548 69042548 G A RAP1B Missense_Mutation p.G15E 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 12 69053722 69053722 T - RAP1B 3'UTR 0.24 TCGA-2W-A8YY-01 12 69125467 69125467 C A NUP107 Missense_Mutation p.L656M 0.37 tolerated(0.11) benign(0.089) TCGA-2W-A8YY-01 12 69129082 69129082 C T NUP107 Silent p.V820V 0.40 TCGA-2W-A8YY-01 12 6928024 6928024 G A CD4 Silent p.E430E 0.31 TCGA-2W-A8YY-01 12 6933241 6933241 C T GPR162 Silent p.H59H 0.26 TCGA-2W-A8YY-01 12 6936471 6936471 C T GPR162 3'UTR 0.35 TCGA-2W-A8YY-01 12 6958071 6958071 C T CDCA3 3'UTR 0.31 TCGA-2W-A8YY-01 12 6958729 6958729 C A CDCA3 Missense_Mutation p.G182C 0.10 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 12 69667110 69667110 T G CPSF6 3'UTR 0.33 TCGA-2W-A8YY-01 12 6981453 6981453 C T SPSB2 Missense_Mutation p.A205T 0.42 tolerated(0.09) probably_damaging(0.999) TCGA-2W-A8YY-01 12 6993426 6993426 C T RPL13P5 RNA 0.15 TCGA-2W-A8YY-01 12 70087547 70087547 G A BEST3 Missense_Mutation p.R130C 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-2W-A8YY-01 12 7025042 7025042 G A ENO2 Missense_Mutation p.G16R 0.37 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-2W-A8YY-01 12 7025873 7025873 G A ENO2 Missense_Mutation p.A74T 0.18 deleterious_low_confidence(0.01) benign(0.385) TCGA-2W-A8YY-01 12 7044762 7044762 G A ATN1 Missense_Mutation p.R111Q 0.38 possibly_damaging(0.819) TCGA-2W-A8YY-01 12 7045211 7045211 T C ATN1 Missense_Mutation p.S261P 0.12 benign(0) TCGA-2W-A8YY-01 12 7046472 7046472 G A ATN1 Missense_Mutation p.G681D 0.33 benign(0.319) TCGA-2W-A8YY-01 12 7051014 7051014 G A ATN1 3'UTR 0.47 TCGA-2W-A8YY-01 12 70760669 70760669 C T KCNMB4 Missense_Mutation p.A52V 0.42 deleterious(0.01) possibly_damaging(0.666) TCGA-2W-A8YY-01 12 7087504 7087504 G A LPCAT3 Missense_Mutation p.R347C 0.11 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 12 70932752 70932752 G A PTPRB Missense_Mutation p.L1941F 0.39 deleterious(0.01) probably_damaging(0.955) TCGA-2W-A8YY-01 12 70948979 70948979 C A PTPRB Missense_Mutation p.A1702S 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 70954707 70954707 G A PTPRB Silent p.A1392A 0.48 TCGA-2W-A8YY-01 12 71029746 71029746 C T PTPRB Nonsense_Mutation p.W52* 0.33 TCGA-2W-A8YY-01 12 71032885 71032885 A T PTPRR 3'UTR 0.48 TCGA-2W-A8YY-01 12 71526580 71526580 C A TSPAN8 Nonsense_Mutation p.G157* 0.34 TCGA-2W-A8YY-01 12 7177698 7177698 A G C1S Missense_Mutation p.T604A 0.31 tolerated(0.61) benign(0.021) TCGA-2W-A8YY-01 12 7178004 7178004 C T C1S 3'UTR 0.19 TCGA-2W-A8YY-01 12 72004537 72004537 C T ZFC3H1 Missense_Mutation p.V1924I 0.32 deleterious(0.04) probably_damaging(0.926) TCGA-2W-A8YY-01 12 72020065 72020065 G T ZFC3H1 Missense_Mutation p.A1431D 0.10 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 12 72030686 72030686 G T ZFC3H1 Missense_Mutation p.L627M 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 12 72056815 72056815 C A ZFC3H1 Missense_Mutation p.E192D 0.39 tolerated(0.23) benign(0.217) TCGA-2W-A8YY-01 12 72289743 72289743 G A TBC1D15 Missense_Mutation p.R308H 0.37 deleterious(0) possibly_damaging(0.87) TCGA-2W-A8YY-01 12 72289826 72289826 G A TBC1D15 Missense_Mutation p.D336N 0.08 tolerated(0.14) benign(0.003) TCGA-2W-A8YY-01 12 72317355 72317355 G A TBC1D15 3'UTR 0.29 TCGA-2W-A8YY-01 12 72317406 72317407 - A TBC1D15 3'UTR 0.22 TCGA-2W-A8YY-01 12 7249174 7249174 G A C1RL Missense_Mutation p.T426M 0.42 tolerated(0.44) benign(0.124) TCGA-2W-A8YY-01 12 72667108 72667108 G A TRHDE Missense_Mutation p.A184T 0.09 tolerated(0.09) benign(0.092) TCGA-2W-A8YY-01 12 72667199 72667199 C T TRHDE Missense_Mutation p.T214I 0.27 deleterious(0) benign(0.013) TCGA-2W-A8YY-01 12 7277248 7277248 G A RBP5 Silent p.L111L 0.35 TCGA-2W-A8YY-01 12 7295873 7295873 G A CLSTN3 Missense_Mutation p.G605S 0.42 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 12 73057020 73057020 G T TRHDE 3'UTR 0.37 TCGA-2W-A8YY-01 12 7309094 7309094 G A CLSTN3 Intron 0.22 TCGA-2W-A8YY-01 12 7310670 7310670 G A CLSTN3 Missense_Mutation p.R955H 0.44 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-2W-A8YY-01 12 7362628 7362628 G A PEX5 Missense_Mutation p.E592K 0.38 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 12 7362957 7362957 G A PEX5 3'UTR 0.40 TCGA-2W-A8YY-01 12 7363632 7363632 G A PEX5 3'Flank 0.57 TCGA-2W-A8YY-01 12 7457055 7457055 G A ACSM4 Missense_Mutation p.R43H 0.33 tolerated(0.13) benign(0.015) TCGA-2W-A8YY-01 12 74932699 74932699 C T ATXN7L3B 3'UTR 0.36 TCGA-2W-A8YY-01 12 74933350 74933350 G T ATXN7L3B 3'UTR 0.31 TCGA-2W-A8YY-01 12 7556173 7556173 G A CD163L1 Nonsense_Mutation p.R456* 0.45 TCGA-2W-A8YY-01 12 75816917 75816917 G A GLIPR1L2 Intron 0.20 TCGA-2W-A8YY-01 12 75874826 75874826 C A GLIPR1 Missense_Mutation p.L56I 0.37 deleterious(0.01) possibly_damaging(0.844) TCGA-2W-A8YY-01 12 75900676 75900676 G A KRR1 Silent p.D93D 0.46 TCGA-2W-A8YY-01 12 76442092 76442093 - A NAP1L1 3'UTR 0.42 TCGA-2W-A8YY-01 12 7647894 7647894 G A CD163 Silent p.G401G 0.46 TCGA-2W-A8YY-01 12 7649443 7649443 G A CD163 Silent p.C355C 0.26 TCGA-2W-A8YY-01 12 76740200 76740200 G A BBS10 Missense_Mutation p.T522M 0.37 tolerated(0.1) benign(0.02) TCGA-2W-A8YY-01 12 76746945 76746945 G A OSBPL8 3'UTR 0.37 TCGA-2W-A8YY-01 12 77245648 77245648 C A ZDHHC17 3'UTR 0.46 TCGA-2W-A8YY-01 12 77415283 77415283 G T E2F7 3'UTR 0.45 TCGA-2W-A8YY-01 12 77417761 77417761 G A E2F7 3'UTR 0.15 TCGA-2W-A8YY-01 12 78225073 78225073 G A NAV3 5'UTR 0.31 TCGA-2W-A8YY-01 12 78400663 78400663 C T NAV3 Missense_Mutation p.P449S 0.38 tolerated_low_confidence(0.81) benign(0.136) TCGA-2W-A8YY-01 12 7842648 7842648 G T GDF3 Missense_Mutation p.S307R 0.45 deleterious(0.01) possibly_damaging(0.649) TCGA-2W-A8YY-01 12 78511864 78511864 G A NAV3 Missense_Mutation p.E943K 0.31 deleterious(0.01) benign(0.236) TCGA-2W-A8YY-01 12 78513063 78513063 A - NAV3 Frame_Shift_Del p.G1031Dfs*43 0.30 TCGA-2W-A8YY-01 12 78513124 78513124 A - NAV3 Frame_Shift_Del p.K1051Sfs*23 0.26 TCGA-2W-A8YY-01 12 78522573 78522573 C T NAV3 Silent p.G1456G 0.45 TCGA-2W-A8YY-01 12 78569178 78569178 G A NAV3 Missense_Mutation p.D1692N 0.36 deleterious(0.01) possibly_damaging(0.642) TCGA-2W-A8YY-01 12 78605391 78605391 G A NAV3 3'Flank 0.45 TCGA-2W-A8YY-01 12 7945667 7945667 C T NANOG Silent p.V91V 0.38 TCGA-2W-A8YY-01 12 7947736 7947736 C A NANOG 3'UTR 0.08 TCGA-2W-A8YY-01 12 7980269 7980269 C T SLC2A14 Missense_Mutation p.R252Q 0.52 tolerated(0.13) benign(0.049) TCGA-2W-A8YY-01 12 79844328 79844328 C T SYT1 3'UTR 0.40 TCGA-2W-A8YY-01 12 79986043 79986043 C G PAWR 3'UTR 0.39 TCGA-2W-A8YY-01 12 79986096 79986096 C T PAWR 3'UTR 0.15 TCGA-2W-A8YY-01 12 79990431 79990431 T G PAWR Missense_Mutation p.S231R 0.24 tolerated(0.53) benign(0.037) TCGA-2W-A8YY-01 12 80169455 80169498 ATCTTCTCAGCAGCTGCATTAACATGAAACAATGGTCTTGATTA TCTTCTCAGCAGCTGCATTAACATGAAACAATGGTCTTGATT PPP1R12A 3'UTR 0.19 TCGA-2W-A8YY-01 12 80226179 80226179 G A PPP1R12A Missense_Mutation p.R194W 0.26 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 12 80623122 80623122 G A OTOGL Missense_Mutation p.R183Q 0.34 tolerated(0.21) benign(0.004) TCGA-2W-A8YY-01 12 80696551 80696551 G A OTOGL Silent p.G1058G 0.44 TCGA-2W-A8YY-01 12 8082458 8082458 C T SLC2A3 Missense_Mutation p.R228Q 0.19 tolerated(0.14) benign(0.014) TCGA-2W-A8YY-01 12 80839437 80839437 G A PTPRQ Silent p.K110K 0.40 TCGA-2W-A8YY-01 12 80862578 80862578 G A PTPRQ Missense_Mutation p.G330R 0.51 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 81102338 81102338 C T MYF6 Silent p.S185S 0.31 TCGA-2W-A8YY-01 12 81102382 81102382 C T MYF6 Missense_Mutation p.T200M 0.31 deleterious(0.01) benign(0.197) TCGA-2W-A8YY-01 12 81111115 81111115 C T MYF5 Silent p.R91R 0.42 TCGA-2W-A8YY-01 12 81111152 81111152 G A MYF5 Missense_Mutation p.E104K 0.40 deleterious(0) benign(0.446) TCGA-2W-A8YY-01 12 81111203 81111203 G A MYF5 Missense_Mutation p.V121M 0.41 deleterious(0) benign(0.096) TCGA-2W-A8YY-01 12 81647107 81647107 G A ACSS3 Missense_Mutation p.V581M 0.30 deleterious(0) possibly_damaging(0.736) TCGA-2W-A8YY-01 12 81660765 81660765 A C PPFIA2 Missense_Mutation p.L1174R 0.22 deleterious(0) probably_damaging(0.946) TCGA-2W-A8YY-01 12 8197503 8197503 C T FOXJ2 Missense_Mutation p.R256C 0.47 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 12 8206045 8206045 C T FOXJ2 3'UTR 0.14 TCGA-2W-A8YY-01 12 8211566 8211566 C A C3AR1 Nonsense_Mutation p.E406* 0.39 TCGA-2W-A8YY-01 12 8211876 8211876 G A C3AR1 Silent p.S302S 0.31 TCGA-2W-A8YY-01 12 8325204 8325204 G T ZNF705A 5'UTR 0.42 TCGA-2W-A8YY-01 12 8330125 8330125 A G ZNF705A Silent p.P283P 0.42 TCGA-2W-A8YY-01 12 8374435 8374435 C T FAM90A1 Missense_Mutation p.D460N 0.12 tolerated(0.27) unknown(0) TCGA-2W-A8YY-01 12 8375192 8375192 C T FAM90A1 Silent p.A207A 0.24 TCGA-2W-A8YY-01 12 8376700 8376700 T C FAM90A1 Missense_Mutation p.K79E 0.31 deleterious(0.01) probably_damaging(0.984) TCGA-2W-A8YY-01 12 8376758 8376758 G A FAM90A1 Silent p.C59C 0.07 TCGA-2W-A8YY-01 12 85255643 85255643 G A SLC6A15 Missense_Mutation p.S654F 0.29 deleterious(0) benign(0.229) TCGA-2W-A8YY-01 12 85264434 85264434 C T SLC6A15 Missense_Mutation p.G440S 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-2W-A8YY-01 12 85266965 85266965 A G SLC6A15 Missense_Mutation p.V337A 0.39 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 12 85408197 85408197 G A TSPAN19 3'UTR 0.31 TCGA-2W-A8YY-01 12 85449404 85449404 C A LRRIQ1 Missense_Mutation p.S278Y 0.47 deleterious(0.02) benign(0.027) TCGA-2W-A8YY-01 12 8549031 8549031 G A LINC00937 RNA 0.15 TCGA-2W-A8YY-01 12 85521657 85521657 G A LRRIQ1 Missense_Mutation p.R1352H 0.22 tolerated(0.05) benign(0.299) TCGA-2W-A8YY-01 12 85638671 85638671 C G LRRIQ1 Missense_Mutation p.H1707Q 0.28 deleterious(0.01) possibly_damaging(0.649) TCGA-2W-A8YY-01 12 85674170 85674170 C T ALX1 Missense_Mutation p.A44V 0.35 deleterious_low_confidence(0.02) benign(0.015) TCGA-2W-A8YY-01 12 85695196 85695196 C T ALX1 Silent p.I308I 0.29 TCGA-2W-A8YY-01 12 86373676 86373677 - A MGAT4C Frame_Shift_Ins p.L276Ffs*11 0.27 TCGA-2W-A8YY-01 12 8667865 8667865 C T CLEC4D Missense_Mutation p.S21L 0.37 deleterious(0.01) benign(0.006) TCGA-2W-A8YY-01 12 8759609 8759609 C T AICDA Splice_Site p.X3_splice 0.11 TCGA-2W-A8YY-01 12 88465149 88465149 C T CEP290 Missense_Mutation p.R1978Q 0.35 benign(0.021) TCGA-2W-A8YY-01 12 88470999 88470999 C A CEP290 Missense_Mutation p.K1903N 0.42 probably_damaging(0.992) TCGA-2W-A8YY-01 12 88478408 88478408 T G CEP290 Missense_Mutation p.E1553D 0.12 probably_damaging(0.998) TCGA-2W-A8YY-01 12 88482983 88482984 - T CEP290 Frame_Shift_Ins p.F1286Vfs*11 0.11 TCGA-2W-A8YY-01 12 88505097 88505097 A G CEP290 Missense_Mutation p.L750S 0.32 probably_damaging(0.979) TCGA-2W-A8YY-01 12 88512507 88512507 C A CEP290 Missense_Mutation p.K512N 0.46 benign(0.1) TCGA-2W-A8YY-01 12 88547113 88547113 C T TMTC3 Missense_Mutation p.R79C 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 12 88586555 88586555 T C TMTC3 Silent p.N627N 0.33 TCGA-2W-A8YY-01 12 88886774 88886774 C T KITLG 3'Flank 0.37 TCGA-2W-A8YY-01 12 88974043 88974043 G A KITLG Nonsense_Mutation p.Q5* 0.15 TCGA-2W-A8YY-01 12 88974070 88974070 C T KITLG 5'UTR 0.47 TCGA-2W-A8YY-01 12 8906597 8906597 G A RIMKLB Missense_Mutation p.R202Q 0.34 deleterious(0.01) benign(0.42) TCGA-2W-A8YY-01 12 8906603 8906603 T G RIMKLB Missense_Mutation p.V204G 0.36 deleterious(0.01) probably_damaging(0.93) TCGA-2W-A8YY-01 12 8906626 8906626 C T RIMKLB Missense_Mutation p.R212C 0.36 deleterious(0.05) benign(0.009) TCGA-2W-A8YY-01 12 89915778 89915778 A C POC1B-GALNT4 3'UTR 0.35 TCGA-2W-A8YY-01 12 89916982 89916982 G A GALNT4 Missense_Mutation p.R449C 0.43 deleterious(0) probably_damaging(0.961) TCGA-2W-A8YY-01 12 89917022 89917022 T C GALNT4 Silent p.L435L 0.28 TCGA-2W-A8YY-01 12 89918322 89918322 G A GALNT4 Missense_Mutation p.A2V 0.58 tolerated_low_confidence(0.18) benign(0.223) TCGA-2W-A8YY-01 12 89918442 89918442 G T GALNT4 5'UTR 0.34 TCGA-2W-A8YY-01 12 8994047 8994047 A G A2ML1 Missense_Mutation p.N388S 0.15 tolerated(0.64) benign(0.004) TCGA-2W-A8YY-01 12 89992376 89992376 T C ATP2B1 Intron 0.41 TCGA-2W-A8YY-01 12 89992941 89992941 G A ATP2B1 Missense_Mutation p.R1102C 0.36 deleterious(0) possibly_damaging(0.711) TCGA-2W-A8YY-01 12 9009847 9009847 C T A2ML1 Missense_Mutation p.A979V 0.36 deleterious(0.01) possibly_damaging(0.841) TCGA-2W-A8YY-01 12 9009896 9009896 G A A2ML1 Silent p.T995T 0.33 TCGA-2W-A8YY-01 12 9074236 9074236 C T PHC1 Nonsense_Mutation p.R116* 0.41 TCGA-2W-A8YY-01 12 9089846 9089846 C T PHC1 Missense_Mutation p.A851V 0.16 tolerated(0.14) unknown(0) TCGA-2W-A8YY-01 12 91347109 91347109 G A CCER1 3'UTR 0.43 TCGA-2W-A8YY-01 12 91347828 91347828 G T CCER1 Missense_Mutation p.S231Y 0.55 deleterious(0.05) probably_damaging(0.919) TCGA-2W-A8YY-01 12 91444335 91444335 G T KERA 3'UTR 0.23 TCGA-2W-A8YY-01 12 9254075 9254075 G A A2M Silent p.L488L 0.33 TCGA-2W-A8YY-01 12 9265976 9265976 G A A2M Missense_Mutation p.L84F 0.50 tolerated(1) benign(0) TCGA-2W-A8YY-01 12 9303243 9303243 T C PZP Missense_Mutation p.T1461A 0.36 deleterious(0) benign(0.108) TCGA-2W-A8YY-01 12 9307367 9307367 C T PZP Missense_Mutation p.A1207T 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 12 93157965 93157965 T C PLEKHG7 Missense_Mutation p.V310A 0.36 tolerated(0.73) benign(0.001) TCGA-2W-A8YY-01 12 93173032 93173032 C T EEA1 Silent p.Q1171Q 0.38 TCGA-2W-A8YY-01 12 93226565 93226565 T G EEA1 Missense_Mutation p.N326T 0.32 tolerated(0.71) benign(0.003) TCGA-2W-A8YY-01 12 93251057 93251057 C T EEA1 Silent p.Q120Q 0.13 TCGA-2W-A8YY-01 12 9354959 9354959 G A PZP Missense_Mutation p.R146C 0.35 deleterious(0.01) possibly_damaging(0.517) TCGA-2W-A8YY-01 12 93803227 93803227 A C UBE2N 3'UTR 0.39 TCGA-2W-A8YY-01 12 93805041 93805041 C T UBE2N Missense_Mutation p.G22D 0.27 deleterious(0.03) benign(0.216) TCGA-2W-A8YY-01 12 95656781 95656781 C A VEZT Missense_Mutation p.L120M 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 12 95879723 95879723 G T METAP2 Nonsense_Mutation p.G132* 0.49 TCGA-2W-A8YY-01 12 96059646 96059646 G A NTN4 Nonsense_Mutation p.R564* 0.21 TCGA-2W-A8YY-01 12 96104366 96104366 C T NTN4 Missense_Mutation p.V345I 0.29 tolerated(0.5) benign(0.001) TCGA-2W-A8YY-01 12 96180820 96180820 G A NTN4 Missense_Mutation p.A161V 0.27 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 12 96402907 96402907 T G LTA4H Missense_Mutation p.N467H 0.10 tolerated(0.09) possibly_damaging(0.682) TCGA-2W-A8YY-01 12 96673534 96673534 A C CDK17 3'UTR 0.29 TCGA-2W-A8YY-01 12 96717891 96717891 C A CDK17 Splice_Site p.X40_splice 0.27 TCGA-2W-A8YY-01 12 97078823 97078823 T C C12orf55 Missense_Mutation p.W1941R 0.35 deleterious(0) benign(0) TCGA-2W-A8YY-01 12 97137282 97137282 T C C12orf55 Missense_Mutation p.V2441A 0.42 tolerated(0.72) benign(0) TCGA-2W-A8YY-01 12 97328891 97328891 G A NEDD1 Silent p.A216A 0.47 TCGA-2W-A8YY-01 12 98849775 98849775 T G SLC9A7P1 RNA 0.32 TCGA-2W-A8YY-01 12 98926799 98926799 C A TMPO Missense_Mutation p.P255H 0.50 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-2W-A8YY-01 12 98927185 98927185 C A TMPO Missense_Mutation p.L384M 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-2W-A8YY-01 12 98993808 98993808 T C SLC25A3 Silent p.R240R 0.41 TCGA-2W-A8YY-01 12 98995248 98995248 G A SLC25A3 Missense_Mutation p.R344H 0.19 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 12 99061290 99061290 G T APAF1 Splice_Site p.X455_splice 0.30 TCGA-2W-A8YY-01 12 993836 993836 G A WNK1 Missense_Mutation p.S1289N 0.60 deleterious(0.02) benign(0.191) TCGA-2W-A8YY-01 13 100215022 100215022 G A TM9SF2 3'UTR 0.33 TCGA-2W-A8YY-01 13 100544698 100544698 C T CLYBL 3'UTR 0.19 TCGA-2W-A8YY-01 13 100634890 100634890 C T ZIC2 Missense_Mutation p.S191L 0.26 deleterious(0.01) benign(0.06) TCGA-2W-A8YY-01 13 101184367 101184367 C A GGACT 3'UTR 0.38 TCGA-2W-A8YY-01 13 101184619 101184619 C T GGACT Missense_Mutation p.R76H 0.35 tolerated(0.13) benign(0.006) TCGA-2W-A8YY-01 13 101707739 101707739 C T NALCN Missense_Mutation p.A1709T 0.42 tolerated_low_confidence(0.7) benign(0.001) TCGA-2W-A8YY-01 13 101910797 101910797 C T NALCN Silent p.A421A 0.33 TCGA-2W-A8YY-01 13 101997677 101997677 C T NALCN Missense_Mutation p.D247N 0.36 tolerated(0.23) possibly_damaging(0.636) TCGA-2W-A8YY-01 13 102029099 102029099 A G NALCN Missense_Mutation p.M199T 0.33 deleterious(0.01) possibly_damaging(0.707) TCGA-2W-A8YY-01 13 102368044 102368044 G A ITGBL1 3'UTR 0.49 TCGA-2W-A8YY-01 13 103266469 103266469 A C TPP2 Missense_Mutation p.N105H 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 103286332 103286332 C T TPP2 Missense_Mutation p.A426V 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 103290664 103290664 A C TPP2 Missense_Mutation p.K638Q 0.31 tolerated(0.24) benign(0.01) TCGA-2W-A8YY-01 13 103301294 103301294 G A TPP2 Missense_Mutation p.R889Q 0.38 deleterious(0.01) possibly_damaging(0.908) TCGA-2W-A8YY-01 13 103316061 103316061 C T TPP2 Silent p.Y1056Y 0.32 TCGA-2W-A8YY-01 13 103317195 103317195 T G TPP2 Missense_Mutation p.I1084M 0.34 deleterious(0.03) benign(0.047) TCGA-2W-A8YY-01 13 103338613 103338613 T C METTL21C Missense_Mutation p.D188G 0.36 deleterious(0) possibly_damaging(0.771) TCGA-2W-A8YY-01 13 103339297 103339297 A G METTL21C Silent p.S131S 0.49 TCGA-2W-A8YY-01 13 103384650 103384650 C T CCDC168 Missense_Mutation p.A1504T 0.49 tolerated(0.44) unknown(0) TCGA-2W-A8YY-01 13 103384807 103384807 G A CCDC168 Silent p.G1451G 0.27 TCGA-2W-A8YY-01 13 103387112 103387112 G T CCDC168 Missense_Mutation p.S683Y 0.25 tolerated(0.07) possibly_damaging(0.781) TCGA-2W-A8YY-01 13 103421851 103421851 G A TEX30 Missense_Mutation p.A19V 0.48 deleterious(0.01) probably_damaging(0.96) TCGA-2W-A8YY-01 13 103492201 103492201 G A BIVM Missense_Mutation p.D500N 0.40 tolerated_low_confidence(0.37) benign(0.003) TCGA-2W-A8YY-01 13 103547813 103547813 G A METTL21EP RNA 0.48 TCGA-2W-A8YY-01 13 103547860 103547860 C T METTL21EP RNA 0.29 TCGA-2W-A8YY-01 13 107209953 107209953 C T ARGLU1 Intron 0.33 TCGA-2W-A8YY-01 13 108881750 108881750 G A ABHD13 Missense_Mutation p.D62N 0.49 deleterious(0) possibly_damaging(0.507) TCGA-2W-A8YY-01 13 109472756 109472756 G A MYO16 Silent p.A291A 0.53 TCGA-2W-A8YY-01 13 109617152 109617152 T G MYO16 Missense_Mutation p.F735L 0.24 tolerated(0.69) benign(0.05) TCGA-2W-A8YY-01 13 109792687 109792687 G T MYO16 Missense_Mutation p.S1354I 0.30 deleterious(0) possibly_damaging(0.888) TCGA-2W-A8YY-01 13 110408300 110408300 C T IRS2 3'UTR 0.38 TCGA-2W-A8YY-01 13 110408590 110408590 C T IRS2 3'UTR 0.28 TCGA-2W-A8YY-01 13 110435021 110435021 G A IRS2 Missense_Mutation p.P1127L 0.42 tolerated(0.23) benign(0.148) TCGA-2W-A8YY-01 13 110802042 110802042 T G COL4A1 3'UTR 0.34 TCGA-2W-A8YY-01 13 110807679 110807679 G A COL4A1 Missense_Mutation p.P1569L 0.38 unknown(0) TCGA-2W-A8YY-01 13 110847441 110847441 C A COL4A1 Missense_Mutation p.G437V 0.45 probably_damaging(0.988) TCGA-2W-A8YY-01 13 111077311 111077311 C T COL4A2 Silent p.G109G 0.45 TCGA-2W-A8YY-01 13 111077332 111077332 C T COL4A2 Silent p.A116A 0.37 TCGA-2W-A8YY-01 13 111099182 111099182 C T COL4A2 Missense_Mutation p.A350V 0.32 benign(0.345) TCGA-2W-A8YY-01 13 111158808 111158808 C T COL4A2 Silent p.G1483G 0.41 TCGA-2W-A8YY-01 13 111164304 111164304 C T COL4A2 Silent p.G1635G 0.31 TCGA-2W-A8YY-01 13 111164475 111164475 G A COL4A2 Silent p.T1692T 0.28 TCGA-2W-A8YY-01 13 111176167 111176167 C T RAB20 Missense_Mutation p.A184T 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 111893665 111893665 G A ARHGEF7 Intron 0.40 TCGA-2W-A8YY-01 13 111935623 111935623 G T ARHGEF7 Missense_Mutation p.E642D 0.38 deleterious(0.02) possibly_damaging(0.84) TCGA-2W-A8YY-01 13 111944497 111944497 G A ARHGEF7 Missense_Mutation p.V744I 0.47 tolerated(0.07) probably_damaging(0.93) TCGA-2W-A8YY-01 13 111944642 111944642 G A ARHGEF7 Missense_Mutation p.R792H 0.49 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-2W-A8YY-01 13 112723300 112723300 G A SOX1 3'UTR 0.38 TCGA-2W-A8YY-01 13 113210464 113210464 G A TUBGCP3 Missense_Mutation p.T208I 0.12 tolerated(0.25) benign(0.004) TCGA-2W-A8YY-01 13 113212634 113212634 T C TUBGCP3 Missense_Mutation p.S142G 0.39 tolerated(0.37) benign(0.001) TCGA-2W-A8YY-01 13 113337733 113337733 G A C13orf35 3'UTR 0.32 TCGA-2W-A8YY-01 13 113744415 113744415 C A MCF2L Intron 0.42 TCGA-2W-A8YY-01 13 113765029 113765029 C T F7 Silent p.H52H 0.12 TCGA-2W-A8YY-01 13 113803380 113803380 C T F10 Missense_Mutation p.A339V 0.53 tolerated(1) probably_damaging(0.956) TCGA-2W-A8YY-01 13 113826077 113826077 C T PROZ Silent p.F309F 0.36 TCGA-2W-A8YY-01 13 113838693 113838693 G A PCID2 Missense_Mutation p.R272C 0.13 deleterious(0.05) possibly_damaging(0.531) TCGA-2W-A8YY-01 13 113849413 113849413 G A PCID2 Missense_Mutation p.A166V 0.14 tolerated(0.27) benign(0.024) TCGA-2W-A8YY-01 13 113960865 113960865 A C LAMP1 Missense_Mutation p.M43L 0.35 tolerated(0.42) benign(0.003) TCGA-2W-A8YY-01 13 113973791 113973791 C A LAMP1 Silent p.R190R 0.11 TCGA-2W-A8YY-01 13 113976792 113976792 A G LAMP1 3'UTR 0.35 TCGA-2W-A8YY-01 13 114009749 114009749 C T GRTP1 Missense_Mutation p.V77I 0.10 tolerated(0.29) benign(0.08) TCGA-2W-A8YY-01 13 114018212 114018212 C T GRTP1 Missense_Mutation p.G16R 0.37 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 13 114076936 114076936 G A ADPRHL1 3'Flank 0.37 TCGA-2W-A8YY-01 13 114078637 114078637 G A ADPRHL1 Nonsense_Mutation p.R268* 0.12 TCGA-2W-A8YY-01 13 114134942 114134942 T C DCUN1D2 Missense_Mutation p.T113A 0.41 deleterious(0.04) benign(0.051) TCGA-2W-A8YY-01 13 114193747 114193747 G A TMCO3 Missense_Mutation p.V539M 0.39 tolerated(0.32) benign(0.008) TCGA-2W-A8YY-01 13 114193787 114193787 G A TMCO3 Missense_Mutation p.R552H 0.35 tolerated(0.14) benign(0.178) TCGA-2W-A8YY-01 13 114202735 114202735 C T TMCO3 Missense_Mutation p.R630W 0.26 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 13 114203789 114203789 C A TMCO3 Missense_Mutation p.P657Q 0.29 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 114292192 114292192 G A TFDP1 Missense_Mutation p.G356S 0.12 tolerated(0.15) benign(0.055) TCGA-2W-A8YY-01 13 114295225 114295225 C T TFDP1 3'UTR 0.27 TCGA-2W-A8YY-01 13 114321864 114321864 A G GRK1 Missense_Mutation p.S55G 0.50 tolerated(0.15) benign(0) TCGA-2W-A8YY-01 13 114438241 114438241 G A GRK1 Missense_Mutation p.V533M 0.31 deleterious(0.02) possibly_damaging(0.803) TCGA-2W-A8YY-01 13 114504770 114504770 G A TMEM255B Silent p.G218G 0.41 TCGA-2W-A8YY-01 13 114523953 114523953 G A GAS6 Missense_Mutation p.R641C 0.32 deleterious(0.01) probably_damaging(0.916) TCGA-2W-A8YY-01 13 114526474 114526474 G A GAS6 Silent p.V509V 0.12 TCGA-2W-A8YY-01 13 114531531 114531531 G T GAS6 Missense_Mutation p.L433I 0.43 deleterious(0.03) probably_damaging(0.993) TCGA-2W-A8YY-01 13 114531665 114531665 G A GAS6 Missense_Mutation p.A388V 0.47 deleterious(0.01) benign(0.018) TCGA-2W-A8YY-01 13 114538522 114538522 C A GAS6 Missense_Mutation p.G226C 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 114624097 114624097 T C LINC00452 RNA 0.41 TCGA-2W-A8YY-01 13 114762115 114762115 C T RASA3 Missense_Mutation p.C678Y 0.12 tolerated(0.1) benign(0.309) TCGA-2W-A8YY-01 13 114778628 114778628 G A RASA3 Missense_Mutation p.P501L 0.30 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 13 114786951 114786951 A G RASA3 Silent p.F238F 0.33 TCGA-2W-A8YY-01 13 115037740 115037740 C T CDC16 Missense_Mutation p.P562L 0.35 deleterious_low_confidence(0.02) benign(0.016) TCGA-2W-A8YY-01 13 19753522 19753522 A G TUBA3C Missense_Mutation p.V62A 0.39 deleterious_low_confidence(0) benign(0.404) TCGA-2W-A8YY-01 13 20398620 20398620 C T ZMYM5 Silent p.T669T 0.46 TCGA-2W-A8YY-01 13 20426304 20426304 A G ZMYM5 Missense_Mutation p.V6A 0.55 tolerated_low_confidence(0.08) benign(0.017) TCGA-2W-A8YY-01 13 20579215 20579215 G T ZMYM2 Missense_Mutation p.D379Y 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 20600784 20600784 C A ZMYM2 Nonsense_Mutation p.C539* 0.38 TCGA-2W-A8YY-01 13 20716890 20716890 G A GJA3 Missense_Mutation p.R180C 0.33 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 13 21331596 21331596 A G N6AMT2 Missense_Mutation p.W48R 0.48 deleterious(0) probably_damaging(0.94) TCGA-2W-A8YY-01 13 21383303 21383303 C T XPO4 Missense_Mutation p.R471Q 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-2W-A8YY-01 13 21383304 21383304 G A XPO4 Nonsense_Mutation p.R471* 0.49 TCGA-2W-A8YY-01 13 21436893 21436893 G A XPO4 Nonsense_Mutation p.R94* 0.20 TCGA-2W-A8YY-01 13 21436902 21436902 C T XPO4 Missense_Mutation p.E91K 0.20 tolerated(0.58) benign(0.026) TCGA-2W-A8YY-01 13 21548949 21548949 G A LATS2 3'UTR 0.26 TCGA-2W-A8YY-01 13 21549401 21549401 G T LATS2 Missense_Mutation p.L959M 0.32 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 13 21553847 21553847 T C LATS2 Missense_Mutation p.T919A 0.33 tolerated(0.65) probably_damaging(0.998) TCGA-2W-A8YY-01 13 21557682 21557682 G A LATS2 Silent p.A721A 0.52 TCGA-2W-A8YY-01 13 21562118 21562118 C T LATS2 Missense_Mutation p.A601T 0.38 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 13 21562336 21562336 G A LATS2 Missense_Mutation p.S528L 0.31 tolerated(0.12) benign(0.052) TCGA-2W-A8YY-01 13 21721465 21721465 G A SAP18 Missense_Mutation p.R168H 0.38 tolerated(0.1) benign(0.002) TCGA-2W-A8YY-01 13 21742377 21742377 G A SKA3 Missense_Mutation p.R165W 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 13 21742415 21742415 G A SKA3 Missense_Mutation p.S152F 0.50 tolerated(0.28) benign(0.397) TCGA-2W-A8YY-01 13 23907623 23907623 C T SACS Silent p.E3464E 0.22 TCGA-2W-A8YY-01 13 23911738 23911738 G A SACS Missense_Mutation p.R2093C 0.29 benign(0.003) TCGA-2W-A8YY-01 13 23915452 23915453 - T SACS Frame_Shift_Ins p.L855Ifs*11 0.24 TCGA-2W-A8YY-01 13 23939315 23939315 C T SACS Silent p.A149A 0.36 TCGA-2W-A8YY-01 13 24384014 24384014 C T MIPEP Missense_Mutation p.C568Y 0.35 tolerated(0.34) benign(0.158) TCGA-2W-A8YY-01 13 24465795 24465795 C T C1QTNF9B Missense_Mutation p.S212N 0.14 tolerated(0.18) benign(0.022) TCGA-2W-A8YY-01 13 24798292 24798292 G A SPATA13 Missense_Mutation p.V409I 0.49 tolerated_low_confidence(0.05) benign(0.446) TCGA-2W-A8YY-01 13 24895539 24895539 G A AL359736.1 Missense_Mutation p.L10F 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-2W-A8YY-01 13 25008530 25008530 T C PARP4 Intron 0.35 TCGA-2W-A8YY-01 13 25077813 25077813 G A PARP4 Silent p.G34G 0.42 TCGA-2W-A8YY-01 13 25352465 25352465 C A RNF17 Missense_Mutation p.T117N 0.38 tolerated_low_confidence(0.09) probably_damaging(0.95) TCGA-2W-A8YY-01 13 25378481 25378481 C A RNF17 Missense_Mutation p.H669N 0.47 tolerated(0.5) benign(0) TCGA-2W-A8YY-01 13 25482206 25482206 C A CENPJ Missense_Mutation p.K308N 0.31 tolerated(0.51) benign(0.005) TCGA-2W-A8YY-01 13 25486145 25486145 C T CENPJ Silent p.Q169Q 0.38 TCGA-2W-A8YY-01 13 25671552 25671552 G T PABPC3 Missense_Mutation p.A406S 0.38 tolerated(0.11) benign(0.111) TCGA-2W-A8YY-01 13 25744260 25744260 G T AMER2 Missense_Mutation p.P500T 0.36 tolerated(0.6) benign(0.257) TCGA-2W-A8YY-01 13 25840368 25840368 G A MTMR6 Nonsense_Mutation p.R121* 0.11 TCGA-2W-A8YY-01 13 25861423 25861423 G A MTMR6 5'UTR 0.30 TCGA-2W-A8YY-01 13 25887879 25887879 A G NUPL1 Silent p.T188T 0.31 TCGA-2W-A8YY-01 13 25910225 25910225 G A NUPL1 Intron 0.59 TCGA-2W-A8YY-01 13 26043227 26043227 G A ATP8A2 Silent p.P63P 0.13 TCGA-2W-A8YY-01 13 26133894 26133894 A G ATP8A2 Missense_Mutation p.D463G 0.41 tolerated(0.09) benign(0.003) TCGA-2W-A8YY-01 13 26413741 26413741 C T ATP8A2 Missense_Mutation p.P979S 0.57 tolerated(0.36) probably_damaging(1) TCGA-2W-A8YY-01 13 26594498 26594498 C T ATP8A2 3'UTR 0.33 TCGA-2W-A8YY-01 13 26620797 26620797 C T SHISA2 Missense_Mutation p.V248M 0.16 deleterious(0.01) possibly_damaging(0.685) TCGA-2W-A8YY-01 13 26792715 26792715 C T RNF6 Silent p.Q74Q 0.39 TCGA-2W-A8YY-01 13 27254252 27254252 G A WASF3 Intron 0.32 TCGA-2W-A8YY-01 13 27332778 27332778 G A GPR12 3'UTR 0.38 TCGA-2W-A8YY-01 13 27645219 27645219 C T USP12 Missense_Mutation p.D334N 0.27 tolerated(0.06) possibly_damaging(0.529) TCGA-2W-A8YY-01 13 28141847 28141847 A C LNX2 Missense_Mutation p.I262S 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 28197244 28197244 C T POLR1D Nonsense_Mutation p.R87* 0.55 TCGA-2W-A8YY-01 13 28240046 28240046 C T POLR1D Missense_Mutation p.R109W 0.30 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-2W-A8YY-01 13 28578274 28578274 G T FLT3 Missense_Mutation p.P966H 0.46 tolerated(0.23) benign(0.008) TCGA-2W-A8YY-01 13 28626756 28626756 G A FLT3 Silent p.D180D 0.17 TCGA-2W-A8YY-01 13 28813832 28813832 G A PAN3 Intron 0.19 TCGA-2W-A8YY-01 13 28830630 28830630 C T PAN3 Missense_Mutation p.T401M 0.10 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 13 28834604 28834604 T A PAN3 Silent p.I423I 0.34 TCGA-2W-A8YY-01 13 28834652 28834652 C T PAN3 Silent p.N439N 0.16 TCGA-2W-A8YY-01 13 28867949 28867949 G T PAN3 3'Flank 0.42 TCGA-2W-A8YY-01 13 28868296 28868296 C T PAN3 3'Flank 0.14 TCGA-2W-A8YY-01 13 28875763 28875763 G A FLT1 3'UTR 0.58 TCGA-2W-A8YY-01 13 28877407 28877407 C T FLT1 Missense_Mutation p.R1305H 0.48 tolerated(0.2) possibly_damaging(0.66) TCGA-2W-A8YY-01 13 28896991 28896991 G A FLT1 Silent p.S963S 0.40 TCGA-2W-A8YY-01 13 28963964 28963964 T C FLT1 Silent p.E646E 0.28 TCGA-2W-A8YY-01 13 29287225 29287225 G T SLC46A3 Missense_Mutation p.L218I 0.37 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 13 29292010 29292010 T C SLC46A3 Silent p.S42S 0.08 TCGA-2W-A8YY-01 13 29598941 29598941 A G MTUS2 Missense_Mutation p.N46D 0.40 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 13 29608082 29608082 C T MTUS2 Missense_Mutation p.P766S 0.35 tolerated(0.06) probably_damaging(1) TCGA-2W-A8YY-01 13 30061737 30061737 C T MTUS2 Intron 0.12 TCGA-2W-A8YY-01 13 30087823 30087823 G A SLC7A1 3'UTR 0.71 TCGA-2W-A8YY-01 13 30097578 30097578 C T SLC7A1 Missense_Mutation p.A292T 0.30 tolerated(0.29) possibly_damaging(0.861) TCGA-2W-A8YY-01 13 30098324 30098324 C T SLC7A1 Silent p.S257S 0.47 TCGA-2W-A8YY-01 13 30110155 30110155 C T SLC7A1 Silent p.V57V 0.11 TCGA-2W-A8YY-01 13 30110248 30110248 C T SLC7A1 Silent p.T26T 0.37 TCGA-2W-A8YY-01 13 30341225 30341225 G A UBL3 3'UTR 0.38 TCGA-2W-A8YY-01 13 31034179 31034179 C T HMGB1 3'UTR 0.30 TCGA-2W-A8YY-01 13 31231886 31231886 C T USPL1 Missense_Mutation p.R558C 0.31 tolerated(0.05) benign(0.151) TCGA-2W-A8YY-01 13 31232715 31232715 C T USPL1 Missense_Mutation p.S834L 0.21 tolerated(0.44) benign(0.004) TCGA-2W-A8YY-01 13 31897911 31897911 T G B3GALTL Missense_Mutation p.V403G 0.48 deleterious(0) possibly_damaging(0.892) TCGA-2W-A8YY-01 13 32360720 32360720 C A RXFP2 Missense_Mutation p.P340H 0.12 deleterious(0) possibly_damaging(0.906) TCGA-2W-A8YY-01 13 32527276 32527276 C T EEF1DP3 RNA 0.09 TCGA-2W-A8YY-01 13 32527313 32527313 C T EEF1DP3 RNA 0.20 TCGA-2W-A8YY-01 13 32605930 32605930 G A FRY 5'UTR 0.27 TCGA-2W-A8YY-01 13 32705839 32705839 G A FRY Silent p.A249A 0.36 TCGA-2W-A8YY-01 13 32729647 32729647 G A FRY Missense_Mutation p.R500Q 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 32758747 32758747 G A FRY Missense_Mutation p.R1022H 0.31 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 13 32768410 32768410 C T FRY Missense_Mutation p.A1241V 0.08 deleterious(0) possibly_damaging(0.736) TCGA-2W-A8YY-01 13 32870061 32870061 C T FRY 3'UTR 0.37 TCGA-2W-A8YY-01 13 32905116 32905116 G A BRCA2 Missense_Mutation p.A248T 0.39 tolerated(0.17) benign(0) TCGA-2W-A8YY-01 13 32914066 32914066 A C BRCA2 Silent p.T1858T 0.32 TCGA-2W-A8YY-01 13 32914477 32914477 C T BRCA2 Silent p.N1995N 0.40 TCGA-2W-A8YY-01 13 32914512 32914512 C T BRCA2 Missense_Mutation p.T2007I 0.16 deleterious(0.01) benign(0.283) TCGA-2W-A8YY-01 13 32929049 32929049 T C BRCA2 Silent p.G2353G 0.44 TCGA-2W-A8YY-01 13 32929343 32929343 C T BRCA2 Silent p.D2451D 0.10 TCGA-2W-A8YY-01 13 32930716 32930716 C T BRCA2 Silent p.G2529G 0.36 TCGA-2W-A8YY-01 13 32972574 32972574 C T BRCA2 Silent p.Y3308Y 0.43 TCGA-2W-A8YY-01 13 32972674 32972674 G A BRCA2 Missense_Mutation p.E3342K 0.28 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 13 33002142 33002142 G A N4BP2L1 Silent p.P26P 0.47 TCGA-2W-A8YY-01 13 33016813 33016813 C T N4BP2L2 Missense_Mutation p.E621K 0.45 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 13 33016973 33016974 - G N4BP2L2 Frame_Shift_Ins p.L568Ffs*4 0.19 TCGA-2W-A8YY-01 13 33309466 33309466 G A PDS5B Missense_Mutation p.R802Q 0.47 tolerated(0.11) benign(0.011) TCGA-2W-A8YY-01 13 33350428 33350428 G - PDS5B 3'UTR 0.31 TCGA-2W-A8YY-01 13 33591218 33591218 G A KL Missense_Mutation p.D214N 0.38 tolerated(0.06) benign(0.029) TCGA-2W-A8YY-01 13 33629245 33629245 C T KL Silent p.F464F 0.09 TCGA-2W-A8YY-01 13 33635125 33635125 C A KL Missense_Mutation p.L637M 0.43 deleterious(0.02) probably_damaging(0.986) TCGA-2W-A8YY-01 13 33635866 33635866 G A KL Missense_Mutation p.D884N 0.47 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 13 33679470 33679470 G A STARD13 3'UTR 0.58 TCGA-2W-A8YY-01 13 34404868 34404868 T C RFC3 Silent p.L196L 0.29 TCGA-2W-A8YY-01 13 34410259 34410259 T C RFC3 Silent p.L300L 0.48 TCGA-2W-A8YY-01 13 35782962 35782962 C T NBEA Missense_Mutation p.A1831V 0.37 tolerated(0.06) benign(0.043) TCGA-2W-A8YY-01 13 35806667 35806667 C T NBEA Missense_Mutation p.A1896V 0.42 tolerated(0.09) possibly_damaging(0.734) TCGA-2W-A8YY-01 13 36167522 36167522 C T NBEA Nonsense_Mutation p.R2412* 0.41 TCGA-2W-A8YY-01 13 36886516 36886516 C A SPG20 Missense_Mutation p.D528Y 0.43 deleterious(0.05) probably_damaging(0.99) TCGA-2W-A8YY-01 13 37006671 37006671 C T CCNA1 5'UTR 0.33 TCGA-2W-A8YY-01 13 37598525 37598525 G A SUPT20H Nonsense_Mutation p.R462* 0.31 TCGA-2W-A8YY-01 13 37602351 37602351 A G SUPT20H Missense_Mutation p.L362P 0.41 tolerated(0.1) benign(0.062) TCGA-2W-A8YY-01 13 37605944 37605944 A C SUPT20H Missense_Mutation p.F266V 0.43 tolerated(0.1) benign(0.011) TCGA-2W-A8YY-01 13 38160369 38160369 G A POSTN Missense_Mutation p.H268Y 0.38 tolerated(0.06) benign(0.029) TCGA-2W-A8YY-01 13 39262157 39262157 G A FREM2 Missense_Mutation p.A226T 0.38 tolerated(0.41) benign(0.001) TCGA-2W-A8YY-01 13 39266384 39266384 G A FREM2 Missense_Mutation p.V1635M 0.46 tolerated(0.08) benign(0.321) TCGA-2W-A8YY-01 13 39450455 39450455 G A FREM2 Missense_Mutation p.R2827H 0.30 tolerated(0.1) benign(0.212) TCGA-2W-A8YY-01 13 39541105 39541105 G A STOML3 Missense_Mutation p.L245F 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 13 39588476 39588476 C A PROSER1 Nonsense_Mutation p.G305* 0.33 TCGA-2W-A8YY-01 13 39952623 39952623 G A LHFP Silent p.G142G 0.34 TCGA-2W-A8YY-01 13 40235010 40235010 C T COG6 Missense_Mutation p.R121C 0.31 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 13 40239236 40239236 G A COG6 Missense_Mutation p.A125T 0.18 tolerated(0.8) benign(0.01) TCGA-2W-A8YY-01 13 40261762 40261762 C T COG6 Missense_Mutation p.P304L 0.19 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 13 40362488 40362488 C T RNY4P14 5'Flank 0.44 TCGA-2W-A8YY-01 13 41382629 41382629 G A SLC25A15 Silent p.A226A 0.24 TCGA-2W-A8YY-01 13 41507949 41507949 G A ELF1 Missense_Mutation p.A491V 0.27 tolerated(0.34) benign(0.009) TCGA-2W-A8YY-01 13 41524100 41524100 A G ELF1 Missense_Mutation p.I124T 0.35 tolerated(0.05) benign(0.001) TCGA-2W-A8YY-01 13 41706082 41706082 C T KBTBD6 Missense_Mutation p.R189Q 0.45 tolerated(0.06) benign(0.168) TCGA-2W-A8YY-01 13 41706599 41706599 G A KBTBD6 Missense_Mutation p.R17C 0.45 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-2W-A8YY-01 13 41767684 41767684 C T KBTBD7 Missense_Mutation p.R237Q 0.43 tolerated(0.44) benign(0.008) TCGA-2W-A8YY-01 13 41767978 41767978 G A KBTBD7 Missense_Mutation p.A139V 0.26 deleterious(0.05) possibly_damaging(0.72) TCGA-2W-A8YY-01 13 41932539 41932539 A G NAA16 Missense_Mutation p.Y396C 0.47 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 13 42144625 42144625 G T VWA8 Missense_Mutation p.S1863Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 13 42189119 42189119 G A VWA8 Silent p.G1571G 0.09 TCGA-2W-A8YY-01 13 42872885 42872885 G A AKAP11 Missense_Mutation p.A190T 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 42873910 42873910 A C AKAP11 Missense_Mutation p.D343A 0.23 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 13 42875284 42875284 C T AKAP11 Missense_Mutation p.A801V 0.42 tolerated(0.25) benign(0.041) TCGA-2W-A8YY-01 13 42875743 42875743 G A AKAP11 Missense_Mutation p.S954N 0.35 deleterious(0.03) benign(0.169) TCGA-2W-A8YY-01 13 42893582 42893582 A G AKAP11 3'UTR 0.38 TCGA-2W-A8YY-01 13 43469149 43469149 C T EPSTI1 Missense_Mutation p.S315N 0.33 deleterious(0.02) possibly_damaging(0.661) TCGA-2W-A8YY-01 13 43986185 43986185 G A ENOX1 Silent p.A25A 0.34 TCGA-2W-A8YY-01 13 44456465 44456465 C T LACC1 Missense_Mutation p.A236V 0.29 deleterious(0.03) benign(0.12) TCGA-2W-A8YY-01 13 44734865 44734865 C T SMIM2 Missense_Mutation p.A43T 0.31 tolerated(0.89) benign(0) TCGA-2W-A8YY-01 13 45767782 45767782 C T KCTD4 3'UTR 0.14 TCGA-2W-A8YY-01 13 45965211 45965211 G A SLC25A30 3'Flank 0.35 TCGA-2W-A8YY-01 13 45965467 45965467 C T SLC25A30 3'Flank 0.32 TCGA-2W-A8YY-01 13 46288066 46288066 C T SPERT Silent p.S302S 0.80 TCGA-2W-A8YY-01 13 46531142 46531142 G A ZC3H13 3'UTR 0.33 TCGA-2W-A8YY-01 13 46531202 46531203 - A ZC3H13 3'UTR 0.23 TCGA-2W-A8YY-01 13 46543084 46543084 G A ZC3H13 Missense_Mutation p.R1199C 0.28 unknown(0) TCGA-2W-A8YY-01 13 46543962 46543962 T C ZC3H13 Missense_Mutation p.E906G 0.40 unknown(0) TCGA-2W-A8YY-01 13 46549530 46549530 G A ZC3H13 Missense_Mutation p.R786C 0.39 unknown(0) TCGA-2W-A8YY-01 13 46562940 46562940 G A ZC3H13 Missense_Mutation p.R413C 0.42 unknown(0) TCGA-2W-A8YY-01 13 46700125 46700125 A G LCP1 3'UTR 0.25 TCGA-2W-A8YY-01 13 46919684 46919684 G T KIAA0226L Missense_Mutation p.H561Q 0.43 deleterious(0) possibly_damaging(0.728) TCGA-2W-A8YY-01 13 47011909 47011909 C A PPP1R2P4 RNA 0.39 TCGA-2W-A8YY-01 13 47262088 47262088 A G LRCH1 Silent p.P308P 0.41 TCGA-2W-A8YY-01 13 47466693 47466693 C T HTR2A Missense_Mutation p.A149T 0.32 deleterious(0) possibly_damaging(0.849) TCGA-2W-A8YY-01 13 48570990 48570990 C T SUCLA2 Missense_Mutation p.A87T 0.40 deleterious(0.01) probably_damaging(0.951) TCGA-2W-A8YY-01 13 48986988 48986988 A C LPAR6 5'UTR 0.57 TCGA-2W-A8YY-01 13 49710509 49710509 C T FNDC3A Nonsense_Mutation p.R178* 0.35 TCGA-2W-A8YY-01 13 49782933 49782933 C T FNDC3A 3'UTR 0.48 TCGA-2W-A8YY-01 13 49783734 49783734 C T FNDC3A 3'UTR 0.38 TCGA-2W-A8YY-01 13 49795156 49795156 C T MLNR Missense_Mutation p.A228V 0.31 tolerated(0.08) possibly_damaging(0.688) TCGA-2W-A8YY-01 13 49795349 49795349 C T MLNR Silent p.G292G 0.42 TCGA-2W-A8YY-01 13 49796434 49796434 C T MLNR Missense_Mutation p.A387V 0.31 tolerated(0.27) benign(0.002) TCGA-2W-A8YY-01 13 50062591 50062591 T C SETDB2 Missense_Mutation p.I593T 0.41 tolerated(0.72) benign(0.023) TCGA-2W-A8YY-01 13 50106581 50106581 A G RCBTB1 3'UTR 0.45 TCGA-2W-A8YY-01 13 50118921 50118921 C T RCBTB1 Missense_Mutation p.R375Q 0.43 tolerated(0.63) benign(0.002) TCGA-2W-A8YY-01 13 50273714 50273714 G A KPNA3 3'UTR 0.50 TCGA-2W-A8YY-01 13 50586248 50586248 C T TRIM13 Missense_Mutation p.R61C 0.43 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 13 51517478 51517478 A C RNASEH2B Missense_Mutation p.K153T 0.10 tolerated(0.08) possibly_damaging(0.471) TCGA-2W-A8YY-01 13 51578454 51578454 G T GUCY1B2 RNA 0.36 TCGA-2W-A8YY-01 13 51590462 51590462 A G GUCY1B2 Intron 0.43 TCGA-2W-A8YY-01 13 51825802 51825802 C T FAM124A Missense_Mutation p.A136V 0.48 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 13 51854889 51854889 C T FAM124A Nonsense_Mutation p.Q416* 0.31 TCGA-2W-A8YY-01 13 51936199 51936199 C T SERPINE3 3'UTR 0.70 TCGA-2W-A8YY-01 13 51943074 51943074 C T INTS6 Splice_Site p.X826_splice 0.42 TCGA-2W-A8YY-01 13 52373789 52373789 G A DHRS12 Missense_Mutation p.S24F 0.41 deleterious(0) possibly_damaging(0.603) TCGA-2W-A8YY-01 13 52439534 52439534 G A CCDC70 Missense_Mutation p.R7Q 0.14 tolerated_low_confidence(0.36) benign(0.002) TCGA-2W-A8YY-01 13 52439592 52439592 C T CCDC70 Silent p.F26F 0.13 TCGA-2W-A8YY-01 13 52603114 52603114 G A UTP14C Silent p.R58R 0.35 TCGA-2W-A8YY-01 13 52604083 52604083 C T UTP14C Silent p.D381D 0.30 TCGA-2W-A8YY-01 13 52605865 52605865 C T UTP14C 3'UTR 0.40 TCGA-2W-A8YY-01 13 52639514 52639514 C A NEK5 3'UTR 0.22 TCGA-2W-A8YY-01 13 52639540 52639540 C A NEK5 3'UTR 0.21 TCGA-2W-A8YY-01 13 52676254 52676254 G T NEK5 Missense_Mutation p.L262I 0.42 deleterious(0.04) possibly_damaging(0.792) TCGA-2W-A8YY-01 13 52676358 52676358 C T NEK5 Missense_Mutation p.G227E 0.46 deleterious(0.02) benign(0.045) TCGA-2W-A8YY-01 13 52796510 52796510 T C TPTE2P2 RNA 0.42 TCGA-2W-A8YY-01 13 52960256 52960256 G A THSD1 Missense_Mutation p.R363C 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 53048029 53048029 G T CKAP2 Missense_Mutation p.G539C 0.12 deleterious(0.01) possibly_damaging(0.874) TCGA-2W-A8YY-01 13 53217013 53217013 G A HNRNPA1L2 Missense_Mutation p.G129E 0.48 deleterious(0.04) possibly_damaging(0.829) TCGA-2W-A8YY-01 13 53419648 53419648 G A PCDH8 Silent p.S917S 0.17 TCGA-2W-A8YY-01 13 58206778 58206778 C T PCDH17 Missense_Mutation p.T33M 0.41 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 13 58207239 58207239 G A PCDH17 Missense_Mutation p.G187S 0.37 tolerated(0.41) probably_damaging(1) TCGA-2W-A8YY-01 13 58207439 58207439 C T PCDH17 Silent p.P253P 0.28 TCGA-2W-A8YY-01 13 58207617 58207617 G A PCDH17 Missense_Mutation p.E313K 0.26 tolerated(0.27) probably_damaging(0.93) TCGA-2W-A8YY-01 13 58209228 58209228 C T PCDH17 Missense_Mutation p.R850W 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-2W-A8YY-01 13 58299238 58299238 C T PCDH17 Missense_Mutation p.A1097V 0.26 tolerated_low_confidence(0.07) benign(0.009) TCGA-2W-A8YY-01 13 58299242 58299242 G T PCDH17 Missense_Mutation p.R1098S 0.14 tolerated_low_confidence(0.33) benign(0.001) TCGA-2W-A8YY-01 13 58299534 58299534 G A PCDH17 3'UTR 0.35 TCGA-2W-A8YY-01 13 61060009 61060009 A G TDRD3 Missense_Mutation p.K215R 0.29 deleterious(0.04) probably_damaging(0.97) TCGA-2W-A8YY-01 13 66878332 66878332 C T PCDH9 3'UTR 0.25 TCGA-2W-A8YY-01 13 67205541 67205541 C T PCDH9 Silent p.S1047S 0.30 TCGA-2W-A8YY-01 13 67802341 67802341 C T PCDH9 Missense_Mutation p.V78I 0.53 tolerated(1) possibly_damaging(0.557) TCGA-2W-A8YY-01 13 70275008 70275008 G A KLHL1 3'UTR 0.23 TCGA-2W-A8YY-01 13 70456553 70456553 G A KLHL1 Silent p.A363A 0.21 TCGA-2W-A8YY-01 13 72131182 72131182 T C DACH1 Missense_Mutation p.E517G 0.35 benign(0.089) TCGA-2W-A8YY-01 13 73336146 73336146 A G DIS3 Missense_Mutation p.Y753H 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 73547805 73547805 C A PIBF1 Missense_Mutation p.H681N 0.33 tolerated(0.08) probably_damaging(0.986) TCGA-2W-A8YY-01 13 73649964 73649964 C T KLF5 Silent p.C438C 0.47 TCGA-2W-A8YY-01 13 74569157 74569157 C T KLF12 Translation_Start_Site p.M1? 0.31 tolerated_low_confidence(1) benign(0) TCGA-2W-A8YY-01 13 75860491 75860491 A G TBC1D4 3'UTR 0.47 TCGA-2W-A8YY-01 13 76143643 76143643 G T UCHL3 Missense_Mutation p.E158D 0.18 tolerated(0.17) benign(0.013) TCGA-2W-A8YY-01 13 76195911 76195911 G A RP11-173B14.5 Intron 0.38 TCGA-2W-A8YY-01 13 77454351 77454351 A G KCTD12 3'UTR 0.09 TCGA-2W-A8YY-01 13 77655625 77655625 G T MYCBP2 Missense_Mutation p.N3747K 0.25 benign(0.116) TCGA-2W-A8YY-01 13 77671535 77671535 C T MYCBP2 Missense_Mutation p.V3214M 0.44 probably_damaging(0.993) TCGA-2W-A8YY-01 13 77692576 77692576 G T MYCBP2 Intron 0.27 TCGA-2W-A8YY-01 13 78182199 78182199 G A SCEL Missense_Mutation p.S389N 0.33 tolerated_low_confidence(0.07) possibly_damaging(0.894) TCGA-2W-A8YY-01 13 78318606 78318606 C T SLAIN1 Intron 0.24 TCGA-2W-A8YY-01 13 79154313 79154313 G A RNF219-AS1 RNA 0.32 TCGA-2W-A8YY-01 13 79174207 79174207 C A POU4F1 3'UTR 0.42 TCGA-2W-A8YY-01 13 79174916 79174916 C T POU4F1 3'UTR 0.36 TCGA-2W-A8YY-01 13 79175263 79175263 G A POU4F1 3'UTR 0.28 TCGA-2W-A8YY-01 13 79175935 79175935 G A POU4F1 Missense_Mutation p.A292V 0.35 deleterious(0) unknown(0) TCGA-2W-A8YY-01 13 79189945 79189945 A G RNF219 Missense_Mutation p.S651P 0.31 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 13 79233294 79233294 G A RNF219 5'UTR 0.67 TCGA-2W-A8YY-01 13 79945262 79945262 C T RBM26 Missense_Mutation p.R151H 0.35 deleterious(0.01) unknown(0) TCGA-2W-A8YY-01 13 84452504 84452504 G A SLITRK1 3'UTR 0.42 TCGA-2W-A8YY-01 13 84455761 84455762 - A SLITRK1 5'UTR 0.35 TCGA-2W-A8YY-01 13 84455822 84455822 G A SLITRK1 5'UTR 0.30 TCGA-2W-A8YY-01 13 86368721 86368722 - T SLITRK6 Frame_Shift_Ins p.K642Efs*5 0.41 TCGA-2W-A8YY-01 13 94197522 94197522 A G GPC6 Missense_Mutation p.H56R 0.08 deleterious(0.02) possibly_damaging(0.752) TCGA-2W-A8YY-01 13 95095776 95095776 A G DCT Missense_Mutation p.M465T 0.40 deleterious(0) possibly_damaging(0.756) TCGA-2W-A8YY-01 13 95104874 95104874 G A DCT Missense_Mutation p.L408F 0.38 deleterious_low_confidence(0) benign(0) TCGA-2W-A8YY-01 13 95271497 95271497 G A GPR180 Missense_Mutation p.G200E 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 13 95279546 95279546 T C GPR180 3'UTR 0.24 TCGA-2W-A8YY-01 13 95280606 95280606 C T GPR180 3'UTR 0.33 TCGA-2W-A8YY-01 13 95715010 95715010 G A ABCC4 Missense_Mutation p.T1105I 0.42 tolerated(0.32) benign(0.107) TCGA-2W-A8YY-01 13 96443252 96443252 G A DNAJC3 Missense_Mutation p.G495R 0.34 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 13 96508469 96508469 G A UGGT2 Silent p.F1317F 0.31 TCGA-2W-A8YY-01 13 96511919 96511919 G A UGGT2 Missense_Mutation p.L1251F 0.28 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 13 96665587 96665587 G T UGGT2 Missense_Mutation p.L212M 0.44 tolerated(0.11) benign(0.094) TCGA-2W-A8YY-01 13 97639968 97639968 C T OXGR1 Missense_Mutation p.D16N 0.41 tolerated(0.48) benign(0.002) TCGA-2W-A8YY-01 13 97995307 97995307 C T MBNL2 Missense_Mutation p.T126M 0.26 tolerated(0.05) benign(0.026) TCGA-2W-A8YY-01 13 98045498 98045498 C A MBNL2 3'UTR 0.26 TCGA-2W-A8YY-01 13 98045819 98045819 G T MBNL2 3'UTR 0.27 TCGA-2W-A8YY-01 13 98655210 98655210 C A IPO5 Missense_Mutation p.D490E 0.18 tolerated(0.22) benign(0.365) TCGA-2W-A8YY-01 13 98829094 98829094 G A RNF113B Missense_Mutation p.R133W 0.15 deleterious(0) possibly_damaging(0.821) TCGA-2W-A8YY-01 13 98829117 98829117 G A RNF113B Missense_Mutation p.P125L 0.18 deleterious(0) benign(0) TCGA-2W-A8YY-01 13 98829267 98829267 G A RNF113B Missense_Mutation p.A75V 0.35 tolerated(0.3) benign(0.001) TCGA-2W-A8YY-01 13 99037076 99037076 G A FARP1 Missense_Mutation p.V197M 0.39 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 13 99100935 99100935 C A FARP1 3'UTR 0.31 TCGA-2W-A8YY-01 13 99101898 99101898 A G FARP1 3'UTR 0.44 TCGA-2W-A8YY-01 13 99115958 99115958 C T STK24 Missense_Mutation p.E318K 0.25 tolerated(0.11) benign(0.148) TCGA-2W-A8YY-01 13 99378417 99378417 G T SLC15A1 Missense_Mutation p.L69I 0.12 tolerated(0.18) benign(0.316) TCGA-2W-A8YY-01 13 99481711 99481711 G A DOCK9 Silent p.T1582T 0.38 TCGA-2W-A8YY-01 13 99505700 99505700 A C DOCK9 Missense_Mutation p.L1303R 0.11 deleterious(0) probably_damaging(0.94) TCGA-2W-A8YY-01 13 99532845 99532845 G T DOCK9 Missense_Mutation p.L943I 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 13 99907895 99907895 G A GPR18 Nonsense_Mutation p.R78* 0.47 TCGA-2W-A8YY-01 14 100138710 100138710 G A HHIPL1 Missense_Mutation p.R596H 0.14 tolerated(0.06) benign(0.006) TCGA-2W-A8YY-01 14 100182253 100182253 G T CYP46A1 Missense_Mutation p.R267M 0.33 tolerated(0.05) possibly_damaging(0.829) TCGA-2W-A8YY-01 14 100188333 100188333 G A CYP46A1 Missense_Mutation p.G369D 0.41 deleterious(0) possibly_damaging(0.898) TCGA-2W-A8YY-01 14 100551165 100551165 C T EVL Silent p.V51V 0.36 TCGA-2W-A8YY-01 14 100612911 100612911 G A DEGS2 3'UTR 0.27 TCGA-2W-A8YY-01 14 100613226 100613226 C T DEGS2 Missense_Mutation p.E282K 0.43 deleterious(0) possibly_damaging(0.875) TCGA-2W-A8YY-01 14 100615323 100615323 C T DEGS2 Silent p.P269P 0.35 TCGA-2W-A8YY-01 14 100615945 100615945 C T DEGS2 Missense_Mutation p.R62H 0.59 tolerated(0.19) benign(0.002) TCGA-2W-A8YY-01 14 100795074 100795074 G A SLC25A47 Silent p.T113T 0.35 TCGA-2W-A8YY-01 14 100795774 100795774 T C SLC25A47 Missense_Mutation p.V240A 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 100801201 100801201 T C WARS 3'UTR 0.52 TCGA-2W-A8YY-01 14 100835431 100835431 G A WARS Missense_Mutation p.A31V 0.55 tolerated_low_confidence(0.08) benign(0.091) TCGA-2W-A8YY-01 14 100847361 100847361 G A WDR25 Missense_Mutation p.G34S 0.41 tolerated(0.28) benign(0.052) TCGA-2W-A8YY-01 14 100848414 100848414 G A WDR25 Intron 0.25 TCGA-2W-A8YY-01 14 100995442 100995442 G A WDR25 Missense_Mutation p.R437K 0.46 tolerated(0.69) benign(0.135) TCGA-2W-A8YY-01 14 101005218 101005218 G A BEGAIN Silent p.Y290Y 0.38 TCGA-2W-A8YY-01 14 101005488 101005488 G A BEGAIN Silent p.S200S 0.38 TCGA-2W-A8YY-01 14 101195349 101195349 G T DLK1 Nonsense_Mutation p.E70* 0.49 TCGA-2W-A8YY-01 14 101200861 101200861 C T DLK1 Silent p.S260S 0.27 TCGA-2W-A8YY-01 14 101341416 101341416 G T MIR665 RNA 0.40 TCGA-2W-A8YY-01 14 101348302 101348302 C T RTL1 Missense_Mutation p.E942K 0.36 tolerated(0.12) probably_damaging(0.996) TCGA-2W-A8YY-01 14 101348623 101348623 G A RTL1 Missense_Mutation p.R835W 0.27 deleterious(0) probably_damaging(0.948) TCGA-2W-A8YY-01 14 101348653 101348653 G A RTL1 Missense_Mutation p.R825C 0.41 deleterious(0.01) benign(0.402) TCGA-2W-A8YY-01 14 101449322 101449322 C T SNORD114-22 RNA 0.26 TCGA-2W-A8YY-01 14 101515931 101515931 G A MIR655 RNA 0.24 TCGA-2W-A8YY-01 14 101532277 101532277 A T MIR410 RNA 0.41 TCGA-2W-A8YY-01 14 102323078 102323078 C T PPP2R5C Silent p.C81C 0.30 TCGA-2W-A8YY-01 14 102394143 102394143 G A PPP2R5C 3'UTR 0.47 TCGA-2W-A8YY-01 14 102452221 102452221 C T DYNC1H1 Silent p.Y553Y 0.49 TCGA-2W-A8YY-01 14 102466474 102466474 G A DYNC1H1 Missense_Mutation p.R1318H 0.36 benign(0.168) TCGA-2W-A8YY-01 14 102495897 102495897 C T DYNC1H1 Nonsense_Mutation p.R3164* 0.48 TCGA-2W-A8YY-01 14 102504848 102504848 C T DYNC1H1 Missense_Mutation p.R3654W 0.49 probably_damaging(0.999) TCGA-2W-A8YY-01 14 102507955 102507955 T G DYNC1H1 Missense_Mutation p.F3996V 0.09 benign(0.248) TCGA-2W-A8YY-01 14 102507957 102507957 C A DYNC1H1 Missense_Mutation p.F3996L 0.41 benign(0.02) TCGA-2W-A8YY-01 14 102510230 102510230 C T DYNC1H1 Missense_Mutation p.R4178C 0.30 probably_damaging(1) TCGA-2W-A8YY-01 14 102514966 102514966 G A DYNC1H1 Silent p.Q4444Q 0.38 TCGA-2W-A8YY-01 14 102516473 102516473 G A DYNC1H1 Missense_Mutation p.A4584T 0.31 benign(0.01) TCGA-2W-A8YY-01 14 102516528 102516528 C T DYNC1H1 Missense_Mutation p.A4602V 0.27 benign(0.01) TCGA-2W-A8YY-01 14 102516871 102516871 C T DYNC1H1 Missense_Mutation p.R4638W 0.51 probably_damaging(0.978) TCGA-2W-A8YY-01 14 102548455 102548455 A G HSP90AA1 Silent p.L816L 0.27 TCGA-2W-A8YY-01 14 102695193 102695193 C A MOK 3'UTR 0.36 TCGA-2W-A8YY-01 14 102700072 102700072 G A MOK Silent p.H215H 0.23 TCGA-2W-A8YY-01 14 102891381 102891381 C T TECPR2 Missense_Mutation p.A235V 0.19 deleterious(0) possibly_damaging(0.7) TCGA-2W-A8YY-01 14 102965124 102965124 T C TECPR2 3'UTR 0.41 TCGA-2W-A8YY-01 14 102965409 102965409 C T TECPR2 3'UTR 0.18 TCGA-2W-A8YY-01 14 103196645 103196645 C T RCOR1 3'UTR 0.50 TCGA-2W-A8YY-01 14 103400145 103400145 C T CDC42BPB Silent p.S1680S 0.13 TCGA-2W-A8YY-01 14 103406212 103406212 C T CDC42BPB Missense_Mutation p.R1555Q 0.45 deleterious(0) benign(0.07) TCGA-2W-A8YY-01 14 103574038 103574038 G A EXOC3L4 Missense_Mutation p.R591Q 0.23 deleterious(0.02) probably_damaging(0.984) TCGA-2W-A8YY-01 14 103601797 103601797 G A TNFAIP2 3'UTR 0.27 TCGA-2W-A8YY-01 14 103969924 103969924 G A MARK3 3'UTR 0.26 TCGA-2W-A8YY-01 14 103996409 103996409 C T TRMT61A Missense_Mutation p.R32C 0.39 deleterious(0.02) possibly_damaging(0.892) TCGA-2W-A8YY-01 14 103996618 103996618 T C TRMT61A Silent p.L101L 0.42 TCGA-2W-A8YY-01 14 104025855 104025855 C T BAG5 3'Flank 0.44 TCGA-2W-A8YY-01 14 104026209 104026209 C T BAG5 Silent p.A472A 0.39 TCGA-2W-A8YY-01 14 104026648 104026648 C A BAG5 Missense_Mutation p.R326I 0.17 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-2W-A8YY-01 14 104145811 104145811 G A KLC1 Missense_Mutation p.V527M 0.45 tolerated_low_confidence(0.23) benign(0.01) TCGA-2W-A8YY-01 14 104169661 104169661 G A XRCC3 Missense_Mutation p.A137V 0.36 tolerated(0.08) benign(0.122) TCGA-2W-A8YY-01 14 104173349 104173349 G T XRCC3 Missense_Mutation p.L133M 0.40 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 14 104199663 104199663 G A ZFYVE21 3'UTR 0.30 TCGA-2W-A8YY-01 14 104202500 104202500 G A PPP1R13B Missense_Mutation p.A1024V 0.38 tolerated(1) benign(0) TCGA-2W-A8YY-01 14 104492438 104492438 G T TDRD9 Nonsense_Mutation p.E996* 0.17 TCGA-2W-A8YY-01 14 104571051 104571051 G A ASPG Silent p.L343L 0.38 TCGA-2W-A8YY-01 14 104571062 104571062 T C ASPG Missense_Mutation p.V347A 0.33 tolerated(0.54) benign(0.012) TCGA-2W-A8YY-01 14 104583834 104583834 C T ASPG 3'Flank 0.14 TCGA-2W-A8YY-01 14 104640552 104640552 G A KIF26A Missense_Mutation p.A700T 0.09 tolerated(0.05) benign(0.127) TCGA-2W-A8YY-01 14 104642296 104642296 C T KIF26A Silent p.F1057F 0.28 TCGA-2W-A8YY-01 14 105169679 105169679 C A INF2 Silent p.L185L 0.33 TCGA-2W-A8YY-01 14 105173643 105173643 C T INF2 Nonsense_Mutation p.R347* 0.36 TCGA-2W-A8YY-01 14 105246526 105246526 C T AKT1 Missense_Mutation p.R25H 0.32 deleterious(0) probably_damaging(0.967) TCGA-2W-A8YY-01 14 105269038 105269038 C T ZBTB42 3'UTR 0.46 TCGA-2W-A8YY-01 14 105270215 105270215 C T ZBTB42 3'UTR 0.67 TCGA-2W-A8YY-01 14 105346670 105346670 C T CEP170B Missense_Mutation p.A127V 0.33 tolerated(0.13) benign(0.021) TCGA-2W-A8YY-01 14 105353796 105353796 G A CEP170B Missense_Mutation p.G1074R 0.29 tolerated(0.1) possibly_damaging(0.887) TCGA-2W-A8YY-01 14 105360002 105360002 A G CEP170B Missense_Mutation p.E1394G 0.25 deleterious(0) possibly_damaging(0.897) TCGA-2W-A8YY-01 14 105393534 105393534 G A PLD4 Silent p.P19P 0.39 TCGA-2W-A8YY-01 14 105398404 105398404 C T PLD4 Missense_Mutation p.R372C 0.29 deleterious(0) possibly_damaging(0.849) TCGA-2W-A8YY-01 14 105408304 105408304 G A AHNAK2 Missense_Mutation p.A4495V 0.31 possibly_damaging(0.542) TCGA-2W-A8YY-01 14 105409971 105409971 C T AHNAK2 Silent p.E3939E 0.29 TCGA-2W-A8YY-01 14 105412235 105412235 C T AHNAK2 Missense_Mutation p.D3185N 0.36 possibly_damaging(0.649) TCGA-2W-A8YY-01 14 105415798 105415798 G A AHNAK2 Missense_Mutation p.S1997L 0.38 probably_damaging(0.99) TCGA-2W-A8YY-01 14 105416239 105416239 G A AHNAK2 Missense_Mutation p.A1850V 0.35 benign(0.003) TCGA-2W-A8YY-01 14 105417443 105417443 C T AHNAK2 Missense_Mutation p.A1449T 0.34 benign(0.162) TCGA-2W-A8YY-01 14 105418922 105418922 C T AHNAK2 Missense_Mutation p.D956N 0.23 possibly_damaging(0.58) TCGA-2W-A8YY-01 14 105421944 105421944 C T AHNAK2 Silent p.T114T 0.33 TCGA-2W-A8YY-01 14 105518055 105518055 C T GPR132 Missense_Mutation p.R140H 0.13 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 14 105608561 105608561 T C JAG2 3'UTR 0.67 TCGA-2W-A8YY-01 14 105612135 105612135 C T JAG2 Missense_Mutation p.R962H 0.09 tolerated(0.08) benign(0.002) TCGA-2W-A8YY-01 14 105683971 105683971 G A BRF1 Missense_Mutation p.P561L 0.31 tolerated(0.08) benign(0.002) TCGA-2W-A8YY-01 14 105693079 105693079 G A BRF1 Silent p.D269D 0.09 TCGA-2W-A8YY-01 14 105707626 105707626 G A BRF1 Missense_Mutation p.R224C 0.10 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 105716606 105716606 G A BTBD6 Missense_Mutation p.R352Q 0.42 tolerated(0.08) benign(0.382) TCGA-2W-A8YY-01 14 105865714 105865714 C T TEX22 Silent p.L13L 0.44 TCGA-2W-A8YY-01 14 105927198 105927198 G A MTA1 Missense_Mutation p.E284K 0.38 deleterious(0.03) probably_damaging(0.994) TCGA-2W-A8YY-01 14 105936295 105936295 G A MTA1 Missense_Mutation p.D655N 0.43 tolerated(0.26) probably_damaging(0.989) TCGA-2W-A8YY-01 14 105936469 105936469 G A MTA1 Missense_Mutation p.A689T 0.43 tolerated(0.63) benign(0.04) TCGA-2W-A8YY-01 14 105939711 105939711 G A CRIP2 Missense_Mutation p.A43T 0.47 deleterious_low_confidence(0) benign(0.003) TCGA-2W-A8YY-01 14 105995772 105995772 G A TMEM121 Missense_Mutation p.E201K 0.33 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 14 106303783 106303783 T C IGHD Missense_Mutation p.I427V 0.32 tolerated_low_confidence(0.56) benign(0.12) TCGA-2W-A8YY-01 14 106321138 106321138 G A IGHM Missense_Mutation p.A284V 0.36 tolerated(0.89) benign(0.022) TCGA-2W-A8YY-01 14 106322202 106322202 G A IGHM Missense_Mutation p.S41F 0.31 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 14 106346905 106346905 C T IGHD1-26 Missense_Mutation p.V3M 0.08 probably_damaging(0.999) TCGA-2W-A8YY-01 14 106436326 106436326 G A ADAM6 RNA 0.19 TCGA-2W-A8YY-01 14 106471419 106471419 G A IGHV1-3 Missense_Mutation p.P60S 0.33 deleterious(0.04) benign(0.361) TCGA-2W-A8YY-01 14 106691739 106691739 C A IGHV3-21 Missense_Mutation p.K95N 0.28 deleterious_low_confidence(0.04) benign(0.308) TCGA-2W-A8YY-01 14 106757861 106757861 C T IGHV2-26 Missense_Mutation p.S49N 0.41 deleterious(0.02) benign(0.008) TCGA-2W-A8YY-01 14 106757893 106757893 C T IGHV2-26 Silent p.T38T 0.28 TCGA-2W-A8YY-01 14 106791136 106791136 C T IGHV3-30 Missense_Mutation p.G74R 0.07 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-2W-A8YY-01 14 106877718 106877718 C A IGHV4-39 Missense_Mutation p.K92N 0.33 deleterious(0.01) benign(0.099) TCGA-2W-A8YY-01 14 106963181 106963181 C T IGHV1-45 Missense_Mutation p.G34E 0.28 deleterious(0) probably_damaging(0.928) TCGA-2W-A8YY-01 14 107179117 107179117 C A IGHV2-70 Missense_Mutation p.Q20H 0.20 deleterious(0) possibly_damaging(0.756) TCGA-2W-A8YY-01 14 19553786 19553786 G A POTEG Missense_Mutation p.D124N 0.08 deleterious(0.03) benign(0.233) TCGA-2W-A8YY-01 14 19558727 19558727 C T POTEG Missense_Mutation p.H178Y 0.09 deleterious(0.01) benign(0.348) TCGA-2W-A8YY-01 14 20249162 20249162 A G OR4M1 Silent p.K227K 0.18 TCGA-2W-A8YY-01 14 20344650 20344650 C A OR4K2 Missense_Mutation p.S75Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 20666109 20666109 C A OR11G2 Silent p.S205S 0.28 TCGA-2W-A8YY-01 14 20692122 20692122 C T OR11H6 Missense_Mutation p.A85V 0.35 deleterious(0) benign(0.323) TCGA-2W-A8YY-01 14 20764579 20764579 G A TTC5 Silent p.S222S 0.47 TCGA-2W-A8YY-01 14 20767555 20767555 C T TTC5 Missense_Mutation p.R150Q 0.35 tolerated(0.61) benign(0.004) TCGA-2W-A8YY-01 14 20781662 20781662 A G CCNB1IP1 Missense_Mutation p.M199T 0.29 tolerated_low_confidence(0.43) benign(0) TCGA-2W-A8YY-01 14 20851363 20851363 C T TEP1 Silent p.K1339K 0.32 TCGA-2W-A8YY-01 14 20852363 20852363 G A TEP1 Missense_Mutation p.S1123F 0.11 deleterious(0.01) possibly_damaging(0.778) TCGA-2W-A8YY-01 14 20854701 20854701 C T TEP1 Silent p.L922L 0.52 TCGA-2W-A8YY-01 14 20869165 20869165 C T TEP1 Silent p.A509A 0.31 TCGA-2W-A8YY-01 14 20871889 20871889 C A TEP1 Missense_Mutation p.R396L 0.46 tolerated(0.06) benign(0.133) TCGA-2W-A8YY-01 14 20897503 20897503 G A KLHL33 Silent p.G369G 0.35 TCGA-2W-A8YY-01 14 20916117 20916117 G A OSGEP Nonsense_Mutation p.R247* 0.42 TCGA-2W-A8YY-01 14 20925551 20925551 C T APEX1 Missense_Mutation p.R281C 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 20927887 20927887 C A TMEM55B Missense_Mutation p.R156I 0.30 deleterious(0) probably_damaging(0.974) TCGA-2W-A8YY-01 14 21024674 21024674 G A RNASE9 Silent p.L190L 0.31 TCGA-2W-A8YY-01 14 21024719 21024719 C A RNASE9 Missense_Mutation p.W175C 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 21108978 21108978 G A OR6S1 Silent p.F291F 0.31 TCGA-2W-A8YY-01 14 21490822 21490822 A G NDRG2 Intron 0.45 TCGA-2W-A8YY-01 14 21542718 21542718 G A ARHGEF40 Missense_Mutation p.A277T 0.43 tolerated(0.66) benign(0.001) TCGA-2W-A8YY-01 14 21560530 21560530 C T ZNF219 Missense_Mutation p.R309H 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 14 21560633 21560633 G A ZNF219 Missense_Mutation p.R275C 0.39 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 14 21679225 21679225 G A HNRNPC 3'UTR 0.35 TCGA-2W-A8YY-01 14 21679332 21679332 C T HNRNPC 3'UTR 0.39 TCGA-2W-A8YY-01 14 21789490 21789490 G A RPGRIP1 Missense_Mutation p.E514K 0.44 deleterious(0) probably_damaging(0.967) TCGA-2W-A8YY-01 14 21792935 21792935 G A RPGRIP1 Missense_Mutation p.A641T 0.40 deleterious(0) probably_damaging(0.911) TCGA-2W-A8YY-01 14 21793078 21793078 G A RPGRIP1 Silent p.S688S 0.57 TCGA-2W-A8YY-01 14 21794062 21794062 C T RPGRIP1 Nonsense_Mutation p.R814* 0.37 TCGA-2W-A8YY-01 14 21819791 21819791 G A SUPT16H 3'UTR 0.36 TCGA-2W-A8YY-01 14 21821653 21821653 G A SUPT16H Nonsense_Mutation p.R998* 0.40 TCGA-2W-A8YY-01 14 21827659 21827659 T C SUPT16H Missense_Mutation p.D762G 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 14 21831070 21831070 A T SUPT16H Silent p.S516S 0.38 TCGA-2W-A8YY-01 14 21852123 21852123 C A SUPT16H 5'UTR 0.29 TCGA-2W-A8YY-01 14 21853623 21853623 A G CHD8 3'UTR 0.15 TCGA-2W-A8YY-01 14 21860707 21860707 G A CHD8 Nonsense_Mutation p.R2244* 0.42 TCGA-2W-A8YY-01 14 21863210 21863210 G A CHD8 Missense_Mutation p.R1751C 0.12 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 14 21868725 21868725 G A CHD8 Missense_Mutation p.R1473C 0.35 deleterious(0.01) possibly_damaging(0.676) TCGA-2W-A8YY-01 14 21871793 21871793 G A CHD8 Missense_Mutation p.R1113C 0.35 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 14 21876913 21876913 C A CHD8 Silent p.R812R 0.42 TCGA-2W-A8YY-01 14 21897397 21897397 A G CHD8 Missense_Mutation p.I314T 0.38 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-2W-A8YY-01 14 21927263 21927263 C T RAB2B 3'UTR 0.44 TCGA-2W-A8YY-01 14 21967473 21967473 C T METTL3 Missense_Mutation p.D499N 0.35 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 14 21969094 21969094 G A METTL3 Silent p.V359V 0.49 TCGA-2W-A8YY-01 14 21992580 21992580 G T SALL2 Missense_Mutation p.P428T 0.45 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 14 22192168 22192168 G T TRAV3 Missense_Mutation p.M11I 0.14 tolerated(0.93) benign(0.002) TCGA-2W-A8YY-01 14 22356673 22356673 G A TRAV12-2 Missense_Mutation p.A111T 0.36 deleterious(0.02) probably_damaging(0.911) TCGA-2W-A8YY-01 14 22471801 22471801 C T TRAV18 Missense_Mutation p.T75M 0.48 tolerated(0.13) benign(0.025) TCGA-2W-A8YY-01 14 22471905 22471905 C T TRAV18 Silent p.L110L 0.38 TCGA-2W-A8YY-01 14 22508904 22508904 C A TRAV20 5'UTR 0.37 TCGA-2W-A8YY-01 14 22592174 22592174 T C TRAV26-1 Missense_Mutation p.S87P 0.38 deleterious(0.01) possibly_damaging(0.773) TCGA-2W-A8YY-01 14 22694997 22694997 C T TRAV36DV7 Missense_Mutation p.A63V 0.54 tolerated(0.08) benign(0.038) TCGA-2W-A8YY-01 14 22997503 22997503 G T TRAJ16 Missense_Mutation p.Q6H 0.27 unknown(0) TCGA-2W-A8YY-01 14 23236563 23236563 C T OXA1L Missense_Mutation p.A117V 0.25 tolerated(0.22) benign(0.04) TCGA-2W-A8YY-01 14 23316675 23316675 G - MMP14 3'UTR 0.45 TCGA-2W-A8YY-01 14 23342592 23342592 G A LRP10 Missense_Mutation p.R51H 0.49 tolerated(0.31) benign(0.006) TCGA-2W-A8YY-01 14 23345044 23345044 G A LRP10 Missense_Mutation p.R296H 0.46 tolerated(0.16) probably_damaging(0.987) TCGA-2W-A8YY-01 14 23346312 23346312 C T LRP10 Missense_Mutation p.A573V 0.12 tolerated(0.1) benign(0.007) TCGA-2W-A8YY-01 14 23346661 23346661 C T LRP10 Silent p.D689D 0.16 TCGA-2W-A8YY-01 14 23395460 23395460 C T PRMT5 Missense_Mutation p.R220H 0.37 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 14 23396014 23396014 G A PRMT5 Missense_Mutation p.R154W 0.44 deleterious(0.01) possibly_damaging(0.613) TCGA-2W-A8YY-01 14 23512012 23512012 G A PSMB11 Missense_Mutation p.R193H 0.46 tolerated(0.21) benign(0.008) TCGA-2W-A8YY-01 14 23527909 23527909 G T ACIN1 3'UTR 0.38 TCGA-2W-A8YY-01 14 23549624 23549624 G T ACIN1 Missense_Mutation p.S365Y 0.39 benign(0.074) TCGA-2W-A8YY-01 14 23562691 23562691 G A ACIN1 Silent p.S125S 0.30 TCGA-2W-A8YY-01 14 23587802 23587802 G A CEBPE Missense_Mutation p.R167C 0.53 tolerated(0.22) probably_damaging(0.985) TCGA-2W-A8YY-01 14 23588136 23588136 G A CEBPE Silent p.S55S 0.36 TCGA-2W-A8YY-01 14 23594765 23594765 A C SLC7A8 3'UTR 0.25 TCGA-2W-A8YY-01 14 23595101 23595101 G A SLC7A8 3'UTR 0.59 TCGA-2W-A8YY-01 14 23597276 23597276 G A SLC7A8 Silent p.L465L 0.44 TCGA-2W-A8YY-01 14 23743498 23743498 A C HOMEZ 3'UTR 0.21 TCGA-2W-A8YY-01 14 23743535 23743535 G T HOMEZ 3'UTR 0.43 TCGA-2W-A8YY-01 14 23777152 23777152 G A BCL2L2-PABPN1 Missense_Mutation p.R59H 0.33 tolerated_low_confidence(0.1) possibly_damaging(0.568) TCGA-2W-A8YY-01 14 23778190 23778190 T C BCL2L2 3'UTR 0.41 TCGA-2W-A8YY-01 14 23794746 23794746 G A PABPN1 3'UTR 0.37 TCGA-2W-A8YY-01 14 23816921 23816921 G A SLC22A17 Missense_Mutation p.R322C 0.50 tolerated(0.18) benign(0.002) TCGA-2W-A8YY-01 14 23818628 23818628 G A SLC22A17 Missense_Mutation p.R127C 0.27 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 14 23846530 23846530 G A CMTM5 Missense_Mutation p.A24T 0.38 tolerated(0.24) benign(0.027) TCGA-2W-A8YY-01 14 23847691 23847691 G A CMTM5 Missense_Mutation p.R87Q 0.30 tolerated(0.14) benign(0.045) TCGA-2W-A8YY-01 14 23857867 23857867 C T MYH6 Intron 0.42 TCGA-2W-A8YY-01 14 23868035 23868035 T - MYH6 Frame_Shift_Del p.N598Tfs*63 0.19 TCGA-2W-A8YY-01 14 23869930 23869930 G A MYH6 Silent p.F466F 0.39 TCGA-2W-A8YY-01 14 23873529 23873529 G A MYH6 Silent p.V237V 0.36 TCGA-2W-A8YY-01 14 23873951 23873951 C T MYH6 Missense_Mutation p.R204H 0.46 tolerated(0.05) possibly_damaging(0.807) TCGA-2W-A8YY-01 14 23895180 23895180 G A MYH7 Missense_Mutation p.R719W 0.15 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 14 23897050 23897050 G A MYH7 Silent p.T544T 0.47 TCGA-2W-A8YY-01 14 23898260 23898260 G T MYH7 Missense_Mutation p.N437K 0.38 tolerated(1) possibly_damaging(0.47) TCGA-2W-A8YY-01 14 23901074 23901074 C A MYH7 Nonsense_Mutation p.E179* 0.37 TCGA-2W-A8YY-01 14 23944783 23944783 G A NGDN Missense_Mutation p.R100H 0.36 deleterious(0.05) benign(0.28) TCGA-2W-A8YY-01 14 23992127 23992127 G A ZFHX2 Missense_Mutation p.L2255F 0.42 unknown(0) TCGA-2W-A8YY-01 14 23993501 23993501 G A ZFHX2 Missense_Mutation p.R1884C 0.43 probably_damaging(1) TCGA-2W-A8YY-01 14 23994449 23994449 G A ZFHX2 Nonsense_Mutation p.R1568* 0.19 TCGA-2W-A8YY-01 14 24000821 24000821 C T ZFHX2 Missense_Mutation p.R890H 0.25 benign(0.386) TCGA-2W-A8YY-01 14 24031553 24031553 T G AP1G2 Silent p.R524R 0.16 TCGA-2W-A8YY-01 14 24035499 24035499 G A AP1G2 Silent p.Y153Y 0.41 TCGA-2W-A8YY-01 14 24035677 24035678 - T AP1G2 Intron 0.15 TCGA-2W-A8YY-01 14 24114434 24114434 C T DHRS2 Missense_Mutation p.R276W 0.44 tolerated_low_confidence(0.08) benign(0) TCGA-2W-A8YY-01 14 24422856 24422856 G A DHRS4 5'UTR 0.23 TCGA-2W-A8YY-01 14 24436681 24436681 C T DHRS4 Intron 0.44 TCGA-2W-A8YY-01 14 24459406 24459406 C T DHRS4L2 Silent p.I48I 0.44 TCGA-2W-A8YY-01 14 24532374 24532374 C T LRRC16B Missense_Mutation p.P918S 0.27 deleterious(0) possibly_damaging(0.554) TCGA-2W-A8YY-01 14 24533457 24533457 G A LRRC16B Missense_Mutation p.M994I 0.17 tolerated(0.39) benign(0) TCGA-2W-A8YY-01 14 24534947 24534947 T C LRRC16B Silent p.D1171D 0.31 TCGA-2W-A8YY-01 14 24566228 24566228 C T PCK2 Missense_Mutation p.R53C 0.25 deleterious(0.01) possibly_damaging(0.536) TCGA-2W-A8YY-01 14 24592386 24592386 G A DCAF11 Nonsense_Mutation p.W503* 0.41 TCGA-2W-A8YY-01 14 24607567 24607567 C T PSME1 Missense_Mutation p.R181C 0.53 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 14 24607911 24607911 G A PSME1 3'UTR 0.33 TCGA-2W-A8YY-01 14 24649257 24649257 C T REC8 Missense_Mutation p.P533S 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 14 24656721 24656721 C T IPO4 Missense_Mutation p.R158Q 0.25 tolerated(0.31) benign(0.002) TCGA-2W-A8YY-01 14 24662185 24662185 T C TM9SF1 Silent p.S212S 0.12 TCGA-2W-A8YY-01 14 24779938 24779938 G A LTB4R2 Missense_Mutation p.G23D 0.50 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 24785904 24785904 C T LTB4R Silent p.N349N 0.36 TCGA-2W-A8YY-01 14 24787894 24787894 C T ADCY4 Missense_Mutation p.R1016H 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 14 24798374 24798374 G A ADCY4 Missense_Mutation p.R473C 0.32 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 14 24807714 24807714 C A RIPK3 Silent p.G177G 0.36 TCGA-2W-A8YY-01 14 24845782 24845782 T C NFATC4 Missense_Mutation p.V843A 0.37 deleterious_low_confidence(0.02) benign(0.027) TCGA-2W-A8YY-01 14 24846858 24846858 G A NFATC4 3'UTR 0.26 TCGA-2W-A8YY-01 14 24879171 24879171 G A NYNRIN Missense_Mutation p.G724D 0.40 deleterious_low_confidence(0.03) benign(0.027) TCGA-2W-A8YY-01 14 24896898 24896898 G T CBLN3 3'UTR 0.32 TCGA-2W-A8YY-01 14 24896942 24896942 G A CBLN3 3'UTR 0.31 TCGA-2W-A8YY-01 14 24902030 24902030 G A KHNYN Nonsense_Mutation p.W484* 0.50 TCGA-2W-A8YY-01 14 24909613 24909613 G A SDR39U1 Silent p.G186G 0.32 TCGA-2W-A8YY-01 14 26917043 26917043 G A NOVA1 3'UTR 0.53 TCGA-2W-A8YY-01 14 28733952 28733952 G A BNIP3P1 RNA 0.29 TCGA-2W-A8YY-01 14 29237511 29237511 C T FOXG1 Silent p.S342S 0.34 TCGA-2W-A8YY-01 14 29237628 29237628 C T FOXG1 Silent p.A381A 0.13 TCGA-2W-A8YY-01 14 29237762 29237762 T C FOXG1 Missense_Mutation p.M426T 0.24 tolerated_low_confidence(0.11) benign(0.056) TCGA-2W-A8YY-01 14 31070984 31070984 A G G2E3 Missense_Mutation p.E254G 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 31077152 31077152 C T G2E3 Silent p.H459H 0.38 TCGA-2W-A8YY-01 14 31355193 31355193 C T COCH Silent p.R384R 0.46 TCGA-2W-A8YY-01 14 31380316 31380316 C A STRN3 Missense_Mutation p.G551C 0.45 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 14 31405831 31405831 C T STRN3 Splice_Site p.X239_splice 0.47 TCGA-2W-A8YY-01 14 31416305 31416305 T G STRN3 Missense_Mutation p.E236A 0.41 tolerated(0.63) benign(0.001) TCGA-2W-A8YY-01 14 31416438 31416438 T C STRN3 Missense_Mutation p.I192V 0.50 tolerated(0.05) probably_damaging(0.97) TCGA-2W-A8YY-01 14 31425409 31425409 C A STRN3 Nonsense_Mutation p.E108* 0.33 TCGA-2W-A8YY-01 14 31483891 31483891 T G STRN3 Intron 0.37 TCGA-2W-A8YY-01 14 31562153 31562153 A G AP4S1 Missense_Mutation p.E116G 0.10 deleterious(0) possibly_damaging(0.901) TCGA-2W-A8YY-01 14 31578739 31578739 A G HECTD1 Missense_Mutation p.V2115A 0.31 tolerated(0.48) possibly_damaging(0.9) TCGA-2W-A8YY-01 14 31578757 31578757 G A HECTD1 Missense_Mutation p.T2109M 0.38 deleterious(0.03) benign(0.271) TCGA-2W-A8YY-01 14 31583261 31583261 C T HECTD1 Missense_Mutation p.C1893Y 0.43 tolerated_low_confidence(0.78) benign(0.011) TCGA-2W-A8YY-01 14 31598609 31598609 C T HECTD1 Missense_Mutation p.R1323H 0.53 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 14 31762657 31762657 C T RP11-596D21.1 Intron 0.33 TCGA-2W-A8YY-01 14 32560366 32560366 A G ARHGAP5 Missense_Mutation p.D164G 0.22 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 32561779 32561779 G A ARHGAP5 Missense_Mutation p.R635Q 0.51 tolerated(0.05) benign(0.036) TCGA-2W-A8YY-01 14 32562652 32562652 G A ARHGAP5 Missense_Mutation p.R926Q 0.28 tolerated(0.26) possibly_damaging(0.536) TCGA-2W-A8YY-01 14 33205005 33205005 A G AKAP6 Missense_Mutation p.T1097A 0.21 deleterious(0) probably_damaging(0.974) TCGA-2W-A8YY-01 14 33290978 33290978 T C AKAP6 Missense_Mutation p.L1320S 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 33299334 33299334 C T AKAP6 3'UTR 0.41 TCGA-2W-A8YY-01 14 34269435 34269435 A G NPAS3 Missense_Mutation p.N641S 0.19 tolerated_low_confidence(0.34) benign(0.025) TCGA-2W-A8YY-01 14 34269649 34269649 C T NPAS3 Silent p.P712P 0.40 TCGA-2W-A8YY-01 14 34270874 34270874 T G NPAS3 3'Flank 0.30 TCGA-2W-A8YY-01 14 34903909 34903909 T G SPTSSA 3'UTR 0.12 TCGA-2W-A8YY-01 14 35066770 35066770 C T SNX6 Missense_Mutation p.V212I 0.26 tolerated(0.41) benign(0.005) TCGA-2W-A8YY-01 14 35077293 35077293 C T SNX6 Silent p.E83E 0.28 TCGA-2W-A8YY-01 14 35179739 35179739 C T CFL2 3'UTR 0.43 TCGA-2W-A8YY-01 14 35179874 35179874 G A CFL2 3'UTR 0.22 TCGA-2W-A8YY-01 14 35222335 35222335 G A BAZ1A 3'UTR 0.33 TCGA-2W-A8YY-01 14 35234063 35234063 C T BAZ1A Missense_Mutation p.R1209K 0.54 deleterious(0.01) possibly_damaging(0.745) TCGA-2W-A8YY-01 14 35240738 35240738 G A BAZ1A Missense_Mutation p.R1094C 0.35 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 14 35245131 35245131 A C BAZ1A Missense_Mutation p.F943V 0.49 tolerated(0.39) possibly_damaging(0.879) TCGA-2W-A8YY-01 14 35579082 35579082 G A PPP2R3C Missense_Mutation p.A116V 0.39 tolerated(0.25) benign(0.145) TCGA-2W-A8YY-01 14 36041833 36041833 T C RALGAPA1 Missense_Mutation p.D1928G 0.27 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 14 36295676 36295676 T C BRMS1L 5'UTR 0.37 TCGA-2W-A8YY-01 14 36789694 36789694 A G MBIP Missense_Mutation p.F34S 0.38 tolerated(0.1) benign(0.015) TCGA-2W-A8YY-01 14 36840972 36840972 G A DPPA3P2 RNA 0.36 TCGA-2W-A8YY-01 14 38061520 38061520 C T FOXA1 Missense_Mutation p.G157S 0.28 tolerated(0.74) benign(0.19) TCGA-2W-A8YY-01 14 38061800 38061800 G T FOXA1 Silent p.S63S 0.48 TCGA-2W-A8YY-01 14 38091781 38091781 G A TTC6 Missense_Mutation p.R171Q 0.42 deleterious_low_confidence(0.05) benign(0.001) TCGA-2W-A8YY-01 14 38165968 38165968 G A TTC6 Missense_Mutation p.R435Q 0.36 tolerated(0.25) benign(0.032) TCGA-2W-A8YY-01 14 38275590 38275590 G A TTC6 Missense_Mutation p.V1397M 0.11 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 38678903 38678903 T C SSTR1 Silent p.A103A 0.35 TCGA-2W-A8YY-01 14 38679189 38679189 G A SSTR1 Missense_Mutation p.A199T 0.50 tolerated(0.59) probably_damaging(0.989) TCGA-2W-A8YY-01 14 38679857 38679857 C T SSTR1 3'UTR 0.25 TCGA-2W-A8YY-01 14 38680046 38680046 G A SSTR1 3'UTR 0.28 TCGA-2W-A8YY-01 14 38682118 38682118 C T SSTR1 3'UTR 0.32 TCGA-2W-A8YY-01 14 38724565 38724565 C T CLEC14A Silent p.P221P 0.42 TCGA-2W-A8YY-01 14 38724579 38724579 G A CLEC14A Missense_Mutation p.R217W 0.45 deleterious(0) benign(0.021) TCGA-2W-A8YY-01 14 38724853 38724853 G A CLEC14A Silent p.S125S 0.19 TCGA-2W-A8YY-01 14 38725514 38725514 C T CLEC14A 5'UTR 0.27 TCGA-2W-A8YY-01 14 39531076 39531076 C T SEC23A Splice_Site p.X467_splice 0.47 TCGA-2W-A8YY-01 14 39565126 39565126 C T SEC23A Missense_Mutation p.C66Y 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 39650860 39650860 C T PNN Silent p.S649S 0.26 TCGA-2W-A8YY-01 14 39651035 39651035 C T PNN Nonsense_Mutation p.R708* 0.52 TCGA-2W-A8YY-01 14 39651289 39651289 A C PNN 3'UTR 0.29 TCGA-2W-A8YY-01 14 39819311 39819311 T C CTAGE5 Missense_Mutation p.V758A 0.35 tolerated(0.23) benign(0.073) TCGA-2W-A8YY-01 14 39819466 39819466 T C CTAGE5 Nonstop_Mutation p.*810Rext*9 0.08 TCGA-2W-A8YY-01 14 39867264 39867264 T C FBXO33 3'UTR 0.38 TCGA-2W-A8YY-01 14 42355895 42355895 C A LRFN5 Missense_Mutation p.R23S 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 14 42361140 42361140 G A LRFN5 Silent p.T691T 0.35 TCGA-2W-A8YY-01 14 44974005 44974005 A G FSCB Missense_Mutation p.F729S 0.37 tolerated(0.15) unknown(0) TCGA-2W-A8YY-01 14 44974441 44974441 T C FSCB Missense_Mutation p.T584A 0.42 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 14 44974442 44974442 C T FSCB Silent p.E583E 0.43 TCGA-2W-A8YY-01 14 45374574 45374574 T A C14orf28 Missense_Mutation p.L252M 0.42 deleterious_low_confidence(0.05) benign(0.196) TCGA-2W-A8YY-01 14 45376350 45376350 C T C14orf28 3'UTR 0.32 TCGA-2W-A8YY-01 14 45396853 45396853 C T KLHL28 3'UTR 0.46 TCGA-2W-A8YY-01 14 45396855 45396855 A C KLHL28 3'UTR 0.46 TCGA-2W-A8YY-01 14 45403535 45403535 G A KLHL28 Nonsense_Mutation p.R376* 0.29 TCGA-2W-A8YY-01 14 45432550 45432550 G A FAM179B Missense_Mutation p.R309H 0.35 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 14 45473395 45473395 C T FAM179B Nonsense_Mutation p.R824* 0.44 TCGA-2W-A8YY-01 14 45475277 45475277 G A FAM179B Missense_Mutation p.R904Q 0.34 deleterious(0.04) benign(0.044) TCGA-2W-A8YY-01 14 45478264 45478264 T C FAM179B Missense_Mutation p.I1018T 0.42 tolerated(0.38) benign(0.005) TCGA-2W-A8YY-01 14 45584648 45584648 G A PRPF39 3'UTR 0.35 TCGA-2W-A8YY-01 14 45642264 45642264 G A FANCM Missense_Mutation p.E723K 0.19 deleterious(0.05) benign(0.009) TCGA-2W-A8YY-01 14 45642407 45642407 C T FANCM Silent p.H770H 0.27 TCGA-2W-A8YY-01 14 45665555 45665555 C T FANCM Missense_Mutation p.H1841Y 0.17 deleterious(0.04) probably_damaging(0.976) TCGA-2W-A8YY-01 14 45716457 45716457 A C MIS18BP1 Missense_Mutation p.I11M 0.30 deleterious(0.01) probably_damaging(0.921) TCGA-2W-A8YY-01 14 47311085 47311085 C A MDGA2 3'UTR 0.11 TCGA-2W-A8YY-01 14 47343401 47343401 C A MDGA2 Nonsense_Mutation p.E814* 0.44 TCGA-2W-A8YY-01 14 50065651 50065651 C T LRR1 5'UTR 0.45 TCGA-2W-A8YY-01 14 50141075 50141076 - T POLE2 Frame_Shift_Ins p.F106Ifs*21 0.38 TCGA-2W-A8YY-01 14 50246315 50246315 T C KLHDC2 Silent p.G212G 0.25 TCGA-2W-A8YY-01 14 50272768 50272768 T C NEMF Missense_Mutation p.T610A 0.43 tolerated(0.13) possibly_damaging(0.836) TCGA-2W-A8YY-01 14 50281519 50281519 C T NEMF Missense_Mutation p.R545Q 0.08 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 50312961 50312961 C T NEMF Missense_Mutation p.R85Q 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-2W-A8YY-01 14 50312979 50312979 C T NEMF Missense_Mutation p.R79Q 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 50625284 50625284 G A SOS2 Missense_Mutation p.R645W 0.13 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 50713791 50713791 T G L2HGDH Missense_Mutation p.Q459H 0.29 tolerated(0.17) benign(0.005) TCGA-2W-A8YY-01 14 50824819 50824819 G A CDKL1 Intron 0.29 TCGA-2W-A8YY-01 14 50952848 50952848 G A MAP4K5 Silent p.I77I 0.27 TCGA-2W-A8YY-01 14 51098988 51098988 T G ATL1 Missense_Mutation p.H536Q 0.33 tolerated_low_confidence(0.55) benign(0.004) TCGA-2W-A8YY-01 14 51101709 51101709 G A SAV1 3'UTR 0.43 TCGA-2W-A8YY-01 14 51227045 51227045 G A NIN Silent p.T643T 0.37 TCGA-2W-A8YY-01 14 51352483 51352483 G A ABHD12B Splice_Site p.X178_splice 0.41 TCGA-2W-A8YY-01 14 51382124 51382124 G T PYGL Missense_Mutation p.L445I 0.26 deleterious(0.01) probably_damaging(0.92) TCGA-2W-A8YY-01 14 51383806 51383806 C A PYGL Missense_Mutation p.E291D 0.10 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 14 51489622 51489622 G A TRIM9 Silent p.I324I 0.38 TCGA-2W-A8YY-01 14 51561232 51561232 G T TRIM9 Silent p.L142L 0.39 TCGA-2W-A8YY-01 14 52187071 52187071 C T FRMD6 Silent p.G441G 0.35 TCGA-2W-A8YY-01 14 52194859 52194859 C A FRMD6 3'UTR 0.34 TCGA-2W-A8YY-01 14 52458111 52458111 G A C14orf166 Silent p.G46G 0.50 TCGA-2W-A8YY-01 14 52472502 52472502 C T NID2 Missense_Mutation p.R1357Q 0.59 tolerated(0.06) probably_damaging(0.998) TCGA-2W-A8YY-01 14 52505695 52505695 G A NID2 Missense_Mutation p.T676I 0.41 tolerated(0.23) benign(0.013) TCGA-2W-A8YY-01 14 52520418 52520418 G A NID2 Silent p.P436P 0.15 TCGA-2W-A8YY-01 14 52735155 52735155 C T PTGDR Missense_Mutation p.A208V 0.42 tolerated(0.11) possibly_damaging(0.756) TCGA-2W-A8YY-01 14 52781138 52781138 G T PTGER2 5'UTR 0.42 TCGA-2W-A8YY-01 14 52905989 52905989 C T TXNDC16 Silent p.Q709Q 0.43 TCGA-2W-A8YY-01 14 53238046 53238046 C T STYX 3'UTR 0.25 TCGA-2W-A8YY-01 14 53239137 53239137 C A STYX 3'UTR 0.30 TCGA-2W-A8YY-01 14 53529661 53529661 C T DDHD1 Missense_Mutation p.R589Q 0.38 deleterious(0.03) possibly_damaging(0.777) TCGA-2W-A8YY-01 14 53529697 53529697 C T DDHD1 Missense_Mutation p.R577Q 0.47 tolerated(0.39) benign(0.017) TCGA-2W-A8YY-01 14 53619335 53619335 G A DDHD1 Missense_Mutation p.T161M 0.32 deleterious(0.02) possibly_damaging(0.587) TCGA-2W-A8YY-01 14 54416754 54416754 C T BMP4 Missense_Mutation p.R408H 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 54417493 54417493 G A BMP4 Missense_Mutation p.R162W 0.49 deleterious(0) benign(0.336) TCGA-2W-A8YY-01 14 54944680 54944681 - T GMFB 3'UTR 0.21 TCGA-2W-A8YY-01 14 54948136 54948136 C T GMFB Missense_Mutation p.R64Q 0.25 tolerated(0.37) benign(0.061) TCGA-2W-A8YY-01 14 54989263 54989263 A C CGRRF1 Missense_Mutation p.N66H 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 55169438 55169438 T G SAMD4A Intron 0.45 TCGA-2W-A8YY-01 14 55251146 55251146 C T SAMD4A Intron 0.41 TCGA-2W-A8YY-01 14 55310390 55310390 C T GCH1 3'UTR 0.41 TCGA-2W-A8YY-01 14 55312551 55312551 T G GCH1 Missense_Mutation p.K187N 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 14 55369271 55369271 C A GCH1 Missense_Mutation p.E37D 0.25 tolerated(0.37) benign(0.001) TCGA-2W-A8YY-01 14 55423880 55423880 C T WDHD1 Missense_Mutation p.A930T 0.21 tolerated(0.51) benign(0.001) TCGA-2W-A8YY-01 14 55510977 55510977 C T SOCS4 Silent p.I406I 0.53 TCGA-2W-A8YY-01 14 55513827 55513827 G A SOCS4 3'UTR 0.44 TCGA-2W-A8YY-01 14 55625286 55625286 G A DLGAP5 Silent p.F609F 0.46 TCGA-2W-A8YY-01 14 56085927 56085927 T G KTN1 Missense_Mutation p.F287C 0.34 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 14 56096730 56096730 G A KTN1 Missense_Mutation p.R379Q 0.41 tolerated(0.56) benign(0.403) TCGA-2W-A8YY-01 14 57088387 57088387 G A TMEM260 Silent p.G455G 0.14 TCGA-2W-A8YY-01 14 57673641 57673641 T C EXOC5 3'UTR 0.22 TCGA-2W-A8YY-01 14 57676375 57676375 C T EXOC5 Silent p.E616E 0.37 TCGA-2W-A8YY-01 14 57748872 57748872 C T AP5M1 Silent p.T338T 0.24 TCGA-2W-A8YY-01 14 58063448 58063448 T C SLC35F4 Missense_Mutation p.I56M 0.11 tolerated_low_confidence(0.06) benign(0.01) TCGA-2W-A8YY-01 14 58599805 58599805 G T C14orf37 Intron 0.40 TCGA-2W-A8YY-01 14 58604928 58604928 C T C14orf37 Silent p.A383A 0.30 TCGA-2W-A8YY-01 14 58674726 58674726 C T ACTR10 Silent p.L75L 0.30 TCGA-2W-A8YY-01 14 58833742 58833742 G T ARID4A Missense_Mutation p.R1222M 0.40 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 14 58839780 58839780 T C ARID4A 3'UTR 0.56 TCGA-2W-A8YY-01 14 58894784 58894784 T C KIAA0586 Intron 0.55 TCGA-2W-A8YY-01 14 58924591 58924591 G T KIAA0586 Nonsense_Mutation p.G546* 0.62 TCGA-2W-A8YY-01 14 59107467 59107467 G A DACT1 Missense_Mutation p.R120Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 59113062 59113062 G T DACT1 Missense_Mutation p.R574M 0.33 deleterious(0) possibly_damaging(0.878) TCGA-2W-A8YY-01 14 59113781 59113781 G T DACT1 Missense_Mutation p.A814S 0.41 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 14 59113824 59113824 G A DACT1 Missense_Mutation p.G828D 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 59792383 59792383 C T DAAM1 Missense_Mutation p.H331Y 0.34 deleterious(0) unknown(0) TCGA-2W-A8YY-01 14 59930347 59930347 T C GPR135 3'UTR 0.33 TCGA-2W-A8YY-01 14 59930927 59930927 C T GPR135 Missense_Mutation p.V340I 0.31 tolerated(0.89) benign(0.058) TCGA-2W-A8YY-01 14 59931110 59931110 C T GPR135 Missense_Mutation p.V279M 0.49 tolerated(0.12) possibly_damaging(0.826) TCGA-2W-A8YY-01 14 60193997 60193997 C T RTN1 Missense_Mutation p.E469K 0.35 deleterious(0.04) possibly_damaging(0.536) TCGA-2W-A8YY-01 14 60433332 60433332 C A LRRC9 Missense_Mutation p.L413M 0.23 deleterious(0.04) possibly_damaging(0.684) TCGA-2W-A8YY-01 14 60465866 60465866 C T LRRC9 Silent p.T817T 0.42 TCGA-2W-A8YY-01 14 60582463 60582463 C A PCNXL4 Missense_Mutation p.L228I 0.36 deleterious(0.04) possibly_damaging(0.893) TCGA-2W-A8YY-01 14 60601003 60601003 C A PCNXL4 3'UTR 0.37 TCGA-2W-A8YY-01 14 60619893 60619893 C T DHRS7 Missense_Mutation p.D133N 0.12 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 60749912 60749912 A G PPM1A Missense_Mutation p.H237R 0.30 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 60758166 60758166 C T PPM1A Silent p.D444D 0.38 TCGA-2W-A8YY-01 14 61115568 61115568 T G SIX1 Missense_Mutation p.K114Q 0.37 deleterious(0) probably_damaging(0.938) TCGA-2W-A8YY-01 14 61179780 61179780 T A SIX4 3'UTR 0.28 TCGA-2W-A8YY-01 14 61187115 61187115 A G SIX4 Silent p.H304H 0.36 TCGA-2W-A8YY-01 14 61190369 61190369 G A SIX4 Silent p.L142L 0.47 TCGA-2W-A8YY-01 14 61201499 61201499 C A MNAT1 5'UTR 0.28 TCGA-2W-A8YY-01 14 61346446 61346446 A G MNAT1 Silent p.S234S 0.43 TCGA-2W-A8YY-01 14 61438717 61438717 C A TRMT5 3'UTR 0.35 TCGA-2W-A8YY-01 14 61746824 61746824 C T TMEM30B Missense_Mutation p.D348N 0.21 tolerated(0.15) benign(0.126) TCGA-2W-A8YY-01 14 61747626 61747626 G A TMEM30B Silent p.A80A 0.17 TCGA-2W-A8YY-01 14 62203829 62203829 T C HIF1A Splice_Site p.X441_splice 0.42 TCGA-2W-A8YY-01 14 62233656 62233656 G A SNAPC1 Missense_Mutation p.R64Q 0.32 tolerated(1) benign(0.009) TCGA-2W-A8YY-01 14 62233995 62233995 G A SNAPC1 Silent p.Q118Q 0.40 TCGA-2W-A8YY-01 14 62462902 62462902 G A SYT16 Silent p.Q55Q 0.11 TCGA-2W-A8YY-01 14 62550979 62550979 G A SYT16 Silent p.S500S 0.34 TCGA-2W-A8YY-01 14 62595174 62595174 G T LINC00643 RNA 0.46 TCGA-2W-A8YY-01 14 63174303 63174303 G - KCNH5 Frame_Shift_Del p.Q964Rfs*59 0.34 TCGA-2W-A8YY-01 14 63174447 63174447 C T KCNH5 Missense_Mutation p.E916K 0.31 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-2W-A8YY-01 14 64407394 64407394 G A SYNE2 Splice_Site p.X47_splice 0.30 TCGA-2W-A8YY-01 14 64408437 64408437 G A SYNE2 Missense_Mutation p.D56N 0.40 probably_damaging(0.999) TCGA-2W-A8YY-01 14 64447384 64447385 - A SYNE2 Frame_Shift_Ins p.E530Rfs*7 0.30 TCGA-2W-A8YY-01 14 64447743 64447743 T C SYNE2 Missense_Mutation p.V563A 0.30 benign(0.107) TCGA-2W-A8YY-01 14 64457705 64457705 G A SYNE2 Missense_Mutation p.V840I 0.45 benign(0.006) TCGA-2W-A8YY-01 14 64497864 64497864 G C SYNE2 Missense_Mutation p.C2337S 0.38 benign(0.135) TCGA-2W-A8YY-01 14 64516577 64516577 C T SYNE2 Silent p.D2542D 0.42 TCGA-2W-A8YY-01 14 64529566 64529566 T G SYNE2 Missense_Mutation p.L3389V 0.41 probably_damaging(0.998) TCGA-2W-A8YY-01 14 64542509 64542509 C A SYNE2 Intron 0.46 TCGA-2W-A8YY-01 14 64547265 64547265 C T SYNE2 Missense_Mutation p.A3752V 0.09 benign(0.176) TCGA-2W-A8YY-01 14 64596942 64596942 A G SYNE2 Silent p.L4772L 0.27 TCGA-2W-A8YY-01 14 64598998 64598998 C T SYNE2 Missense_Mutation p.L4786F 0.27 probably_damaging(0.999) TCGA-2W-A8YY-01 14 64604522 64604522 T C SYNE2 Silent p.I4888I 0.24 TCGA-2W-A8YY-01 14 64676723 64676723 C T SYNE2 Missense_Mutation p.R6202W 0.32 probably_damaging(0.95) TCGA-2W-A8YY-01 14 64688334 64688334 C T SYNE2 Missense_Mutation p.A6701V 0.36 probably_damaging(0.994) TCGA-2W-A8YY-01 14 64694572 64694572 C A SYNE2 3'Flank 0.25 TCGA-2W-A8YY-01 14 64908871 64908871 G T MTHFD1 Nonsense_Mutation p.E662* 0.38 TCGA-2W-A8YY-01 14 64909040 64909040 C T MTHFD1 Missense_Mutation p.R686W 0.36 deleterious(0.02) benign(0.046) TCGA-2W-A8YY-01 14 64939038 64939038 A G AKAP5 3'UTR 0.42 TCGA-2W-A8YY-01 14 64940350 64940350 G T AKAP5 3'UTR 0.22 TCGA-2W-A8YY-01 14 65197595 65197595 G T PLEKHG3 Missense_Mutation p.Q159H 0.09 deleterious(0.01) benign(0.026) TCGA-2W-A8YY-01 14 65208678 65208678 G A PLEKHG3 Missense_Mutation p.V759M 0.32 deleterious(0.01) benign(0.192) TCGA-2W-A8YY-01 14 65213345 65213345 C T SPTB 3'UTR 0.45 TCGA-2W-A8YY-01 14 65216376 65216376 T C SPTB Missense_Mutation p.D2272G 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 65220350 65220350 C T SPTB Silent p.L2169L 0.28 TCGA-2W-A8YY-01 14 65237683 65237683 G A SPTB Silent p.F1906F 0.50 TCGA-2W-A8YY-01 14 65237694 65237694 C T SPTB Missense_Mutation p.A1903T 0.30 tolerated(0.41) benign(0.329) TCGA-2W-A8YY-01 14 65241964 65241964 G A SPTB Missense_Mutation p.A1574V 0.36 tolerated(0.12) benign(0.008) TCGA-2W-A8YY-01 14 66136006 66136006 A G FUT8 Missense_Mutation p.N215D 0.36 deleterious(0.01) probably_damaging(0.975) TCGA-2W-A8YY-01 14 66190879 66190879 G A FUT8 Missense_Mutation p.R366H 0.52 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 14 66209073 66209073 T C FUT8 Missense_Mutation p.V558A 0.33 tolerated(0.2) probably_damaging(0.996) TCGA-2W-A8YY-01 14 66209800 66209800 T G FUT8 3'UTR 0.33 TCGA-2W-A8YY-01 14 66975279 66975279 G A GPHN Missense_Mutation p.D12N 0.35 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-2W-A8YY-01 14 67576919 67576919 C T GPHN Silent p.C452C 0.45 TCGA-2W-A8YY-01 14 67647553 67647553 C T GPHN Missense_Mutation p.R737C 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 14 67647560 67647560 C T GPHN Missense_Mutation p.A739V 0.24 deleterious(0.02) probably_damaging(0.991) TCGA-2W-A8YY-01 14 67843213 67843213 C T EIF2S1 Silent p.L127L 0.40 TCGA-2W-A8YY-01 14 67850063 67850063 A G EIF2S1 Missense_Mutation p.E285G 0.37 deleterious(0.05) possibly_damaging(0.792) TCGA-2W-A8YY-01 14 67939577 67939577 G T TMEM229B 3'UTR 0.38 TCGA-2W-A8YY-01 14 68028951 68028951 C A PLEKHH1 Silent p.G201G 0.46 TCGA-2W-A8YY-01 14 68041007 68041007 C A PLEKHH1 Missense_Mutation p.L659M 0.47 deleterious(0.01) possibly_damaging(0.756) TCGA-2W-A8YY-01 14 68042571 68042571 C T PLEKHH1 Missense_Mutation p.A734V 0.37 tolerated(0.06) benign(0.148) TCGA-2W-A8YY-01 14 68045332 68045332 C T PLEKHH1 Missense_Mutation p.R945C 0.20 deleterious(0) possibly_damaging(0.899) TCGA-2W-A8YY-01 14 68213760 68213760 G A ZFYVE26 3'UTR 0.46 TCGA-2W-A8YY-01 14 68251866 68251866 C A ZFYVE26 Missense_Mutation p.G1145C 0.28 deleterious(0.01) possibly_damaging(0.77) TCGA-2W-A8YY-01 14 69256791 69256791 C T ZFP36L1 Missense_Mutation p.R159H 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 69256975 69256975 G T ZFP36L1 Missense_Mutation p.L98M 0.37 tolerated(0.09) benign(0.311) TCGA-2W-A8YY-01 14 69521765 69521765 G A DCAF5 Silent p.L546L 0.34 TCGA-2W-A8YY-01 14 69522147 69522149 AAG - DCAF5 In_Frame_Del p.F419del 0.29 TCGA-2W-A8YY-01 14 69697274 69697274 C T EXD2 Missense_Mutation p.R226C 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 14 70125248 70125248 G A KIAA0247 5'UTR 0.40 TCGA-2W-A8YY-01 14 70235668 70235668 G T SRSF5 Intron 0.46 TCGA-2W-A8YY-01 14 70236000 70236000 A G SRSF5 Intron 0.29 TCGA-2W-A8YY-01 14 70245198 70245198 G T SLC10A1 Silent p.L265L 0.36 TCGA-2W-A8YY-01 14 70418990 70418990 C A SMOC1 Missense_Mutation p.L79M 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 70512578 70512578 G A SLC8A3 3'UTR 0.32 TCGA-2W-A8YY-01 14 70839797 70839797 C T SYNJ2BP Missense_Mutation p.G117S 0.41 tolerated(0.55) benign(0.009) TCGA-2W-A8YY-01 14 70925399 70925399 C T ADAM21 Missense_Mutation p.H395Y 0.30 tolerated(1) benign(0.006) TCGA-2W-A8YY-01 14 70925529 70925529 G A ADAM21 Missense_Mutation p.C438Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 14 71059650 71059650 C T MED6 Missense_Mutation p.R138Q 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-2W-A8YY-01 14 71209239 71209239 G A MAP3K9 Missense_Mutation p.R466W 0.33 deleterious(0) possibly_damaging(0.885) TCGA-2W-A8YY-01 14 71443673 71443673 C T PCNX Missense_Mutation p.R207W 0.31 deleterious(0.01) possibly_damaging(0.582) TCGA-2W-A8YY-01 14 71502783 71502783 G A PCNX Missense_Mutation p.S1259N 0.31 tolerated(0.47) benign(0.001) TCGA-2W-A8YY-01 14 71577986 71577986 G T PCNX 3'UTR 0.33 TCGA-2W-A8YY-01 14 72055596 72055596 T C SIPA1L1 Missense_Mutation p.V336A 0.54 tolerated(0.12) benign(0.251) TCGA-2W-A8YY-01 14 72165784 72165784 C A SIPA1L1 Missense_Mutation p.S1154Y 0.16 deleterious(0.05) benign(0.424) TCGA-2W-A8YY-01 14 72176159 72176159 C A SIPA1L1 Missense_Mutation p.P1350H 0.24 deleterious(0.05) possibly_damaging(0.541) TCGA-2W-A8YY-01 14 72176186 72176186 T C SIPA1L1 Missense_Mutation p.V1359A 0.26 tolerated(0.77) benign(0.001) TCGA-2W-A8YY-01 14 72205763 72205763 C T SIPA1L1 Missense_Mutation p.A1767V 0.29 tolerated(0.12) probably_damaging(0.972) TCGA-2W-A8YY-01 14 72205780 72205780 C T SIPA1L1 Nonsense_Mutation p.R1773* 0.28 TCGA-2W-A8YY-01 14 73029310 73029310 G A RGS6 3'Flank 0.41 TCGA-2W-A8YY-01 14 73442389 73442389 C T ZFYVE1 Missense_Mutation p.R559H 0.42 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 14 73459882 73459882 C T ZFYVE1 Missense_Mutation p.R391Q 0.47 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 14 73544127 73544127 G T RBM25 Missense_Mutation p.K69N 0.40 probably_damaging(0.918) TCGA-2W-A8YY-01 14 73678558 73678558 G A PSEN1 Missense_Mutation p.S346N 0.22 tolerated(0.45) benign(0.001) TCGA-2W-A8YY-01 14 73718470 73718470 C T PAPLN Missense_Mutation p.R230W 0.40 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 14 73727419 73727419 A G PAPLN Missense_Mutation p.Y636C 0.41 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 14 73729265 73729265 C T PAPLN Missense_Mutation p.A791V 0.42 tolerated(0.06) benign(0.22) TCGA-2W-A8YY-01 14 73732165 73732165 G A PAPLN Silent p.P1044P 0.36 TCGA-2W-A8YY-01 14 74009861 74009861 C T ACOT1 Silent p.G256G 0.22 TCGA-2W-A8YY-01 14 74036181 74036181 A G ACOT2 Silent p.E79E 0.35 TCGA-2W-A8YY-01 14 74041719 74041719 C T ACOT2 Silent p.G318G 0.43 TCGA-2W-A8YY-01 14 74182387 74182387 C T ELMSAN1 3'UTR 0.47 TCGA-2W-A8YY-01 14 74185863 74185863 C T ELMSAN1 3'UTR 0.47 TCGA-2W-A8YY-01 14 74196649 74196649 C T ELMSAN1 Missense_Mutation p.V597M 0.22 tolerated(0.09) benign(0.013) TCGA-2W-A8YY-01 14 74398687 74398687 T C FAM161B 3'Flank 0.36 TCGA-2W-A8YY-01 14 74454672 74454672 G A ENTPD5 Missense_Mutation p.A45V 0.44 tolerated(0.27) benign(0.003) TCGA-2W-A8YY-01 14 74512767 74512767 G A CCDC176 Missense_Mutation p.R194Q 0.33 deleterious(0) probably_damaging(0.95) TCGA-2W-A8YY-01 14 74514718 74514718 G A CCDC176 Missense_Mutation p.A245T 0.37 tolerated(0.3) benign(0.003) TCGA-2W-A8YY-01 14 74761872 74761872 G A ABCD4 Missense_Mutation p.A233V 0.36 tolerated(0.05) probably_damaging(0.924) TCGA-2W-A8YY-01 14 74823806 74823806 G A VRTN Missense_Mutation p.R107H 0.50 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 14 74961627 74961627 G T ISCA2 Missense_Mutation p.S130I 0.10 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 14 74976028 74976028 C T LTBP2 Missense_Mutation p.G1106R 0.45 deleterious(0.02) possibly_damaging(0.894) TCGA-2W-A8YY-01 14 75022245 75022245 G A LTBP2 Nonsense_Mutation p.Q328* 0.33 TCGA-2W-A8YY-01 14 75022277 75022277 G A LTBP2 Missense_Mutation p.P317L 0.32 tolerated(0.08) benign(0) TCGA-2W-A8YY-01 14 75248218 75248218 C A YLPM1 Missense_Mutation p.A491D 0.27 unknown(0) TCGA-2W-A8YY-01 14 75248767 75248767 C T YLPM1 Missense_Mutation p.P674L 0.36 probably_damaging(0.998) TCGA-2W-A8YY-01 14 75265595 75265595 C T YLPM1 Nonsense_Mutation p.R1199* 0.32 TCGA-2W-A8YY-01 14 75287789 75287789 C T YLPM1 Silent p.I2020I 0.22 TCGA-2W-A8YY-01 14 75323504 75323504 C T PROX2 Silent p.E309E 0.38 TCGA-2W-A8YY-01 14 75357759 75357759 A C DLST Missense_Mutation p.T111P 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 14 75376346 75376346 C T RPS6KL1 Silent p.K390K 0.32 TCGA-2W-A8YY-01 14 75385288 75385288 G A RPS6KL1 Silent p.L137L 0.18 TCGA-2W-A8YY-01 14 75388162 75388162 A G RPS6KL1 Missense_Mutation p.V28A 0.50 tolerated(0.16) benign(0.004) TCGA-2W-A8YY-01 14 75516343 75516343 A G MLH3 Missense_Mutation p.S6P 0.48 tolerated(0.37) benign(0.074) TCGA-2W-A8YY-01 14 75568402 75568402 G A NEK9 Missense_Mutation p.R600C 0.42 tolerated(0.09) possibly_damaging(0.719) TCGA-2W-A8YY-01 14 75936087 75936087 G A JDP2 Missense_Mutation p.R145Q 0.37 tolerated(0.3) benign(0.141) TCGA-2W-A8YY-01 14 76114071 76114071 T G FLVCR2 3'UTR 0.16 TCGA-2W-A8YY-01 14 76175631 76175631 G T TTLL5 Intron 0.40 TCGA-2W-A8YY-01 14 76424578 76424578 C T TGFB3 3'UTR 0.35 TCGA-2W-A8YY-01 14 76957873 76957873 C T ESRRB Missense_Mutation p.R291C 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 76965120 76965120 C A ESRRB Intron 0.34 TCGA-2W-A8YY-01 14 77492006 77492006 G A IRF2BPL Silent p.S710S 0.38 TCGA-2W-A8YY-01 14 77492069 77492069 G A IRF2BPL Silent p.S689S 0.41 TCGA-2W-A8YY-01 14 77492108 77492108 G A IRF2BPL Silent p.N676N 0.36 TCGA-2W-A8YY-01 14 77492112 77492112 C T IRF2BPL Missense_Mutation p.R675H 0.33 tolerated(0.07) unknown(0) TCGA-2W-A8YY-01 14 77492181 77492181 G A IRF2BPL Missense_Mutation p.S652L 0.47 tolerated(0.07) unknown(0) TCGA-2W-A8YY-01 14 77492184 77492184 G A IRF2BPL Missense_Mutation p.A651V 0.26 tolerated(0.13) unknown(0) TCGA-2W-A8YY-01 14 77492689 77492689 G A IRF2BPL Missense_Mutation p.R483C 0.55 deleterious(0) unknown(0) TCGA-2W-A8YY-01 14 77580263 77580263 G A CIPC Missense_Mutation p.A268T 0.34 tolerated(0.3) benign(0.04) TCGA-2W-A8YY-01 14 77709361 77709361 G A TMEM63C Missense_Mutation p.D435N 0.30 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 77712359 77712359 G A TMEM63C Missense_Mutation p.G509R 0.27 deleterious(0.04) probably_damaging(0.962) TCGA-2W-A8YY-01 14 77715122 77715122 G A TMEM63C Missense_Mutation p.D593N 0.14 deleterious(0) possibly_damaging(0.639) TCGA-2W-A8YY-01 14 77742306 77742306 G A POMT2 3'UTR 0.57 TCGA-2W-A8YY-01 14 77809673 77809673 C T TMED8 Missense_Mutation p.R203H 0.33 tolerated(0.13) probably_damaging(0.965) TCGA-2W-A8YY-01 14 77809722 77809722 G A TMED8 Missense_Mutation p.R187C 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 77843826 77843826 G A SAMD15 Missense_Mutation p.R22K 0.33 tolerated(1) benign(0.005) TCGA-2W-A8YY-01 14 77846730 77846730 G A SAMD15 Missense_Mutation p.C565Y 0.16 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 14 77908918 77908918 A C VIPAS39 Missense_Mutation p.L240R 0.31 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 77924536 77924536 G A AHSA1 Missense_Mutation p.A2T 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 77945025 77945025 G A ISM2 Missense_Mutation p.S336F 0.10 deleterious(0.02) probably_damaging(0.951) TCGA-2W-A8YY-01 14 77949006 77949006 G A ISM2 Missense_Mutation p.T211I 0.47 deleterious(0) unknown(0) TCGA-2W-A8YY-01 14 77951093 77951093 G A ISM2 Missense_Mutation p.P104L 0.42 deleterious_low_confidence(0) benign(0.348) TCGA-2W-A8YY-01 14 77984461 77984461 C T SPTLC2 Missense_Mutation p.G497R 0.34 deleterious(0) possibly_damaging(0.803) TCGA-2W-A8YY-01 14 78021653 78021653 C T SPTLC2 Missense_Mutation p.G389E 0.32 deleterious(0) benign(0.285) TCGA-2W-A8YY-01 14 78021677 78021677 A C SPTLC2 Missense_Mutation p.F381C 0.28 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 78140295 78140295 G A ALKBH1 Nonsense_Mutation p.R344* 0.54 TCGA-2W-A8YY-01 14 79175831 79175831 G A NRXN3 Missense_Mutation p.R125Q 0.37 tolerated(0.13) probably_damaging(0.959) TCGA-2W-A8YY-01 14 79433558 79433558 C T NRXN3 Missense_Mutation p.H556Y 0.67 tolerated(0.14) possibly_damaging(0.908) TCGA-2W-A8YY-01 14 79746762 79746762 C T NRXN3 Intron 0.33 TCGA-2W-A8YY-01 14 80327620 80327620 C A NRXN3 Intron 0.36 TCGA-2W-A8YY-01 14 80963748 80963748 C A CEP128 3'UTR 0.41 TCGA-2W-A8YY-01 14 81227952 81227952 T - CEP128 Frame_Shift_Del p.K794Nfs*3 0.20 TCGA-2W-A8YY-01 14 81259427 81259427 C - CEP128 Frame_Shift_Del p.E413Kfs*35 0.29 TCGA-2W-A8YY-01 14 81606026 81606026 C T TSHR Silent p.D232D 0.33 TCGA-2W-A8YY-01 14 81610184 81610184 C T TSHR Silent p.F594F 0.38 TCGA-2W-A8YY-01 14 81610608 81610608 G A TSHR Missense_Mutation p.E736K 0.25 tolerated(0.08) benign(0.062) TCGA-2W-A8YY-01 14 81646651 81646651 C T GTF2A1 Nonsense_Mutation p.W349* 0.33 TCGA-2W-A8YY-01 14 81943024 81943024 G A SEL1L 3'UTR 0.40 TCGA-2W-A8YY-01 14 81945992 81945992 G A SEL1L Silent p.G713G 0.29 TCGA-2W-A8YY-01 14 81972565 81972565 T C SEL1L Missense_Mutation p.T121A 0.26 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-2W-A8YY-01 14 85996069 85996069 A C FLRT2 5'Flank 0.38 TCGA-2W-A8YY-01 14 85996755 85996755 G A FLRT2 5'UTR 0.28 TCGA-2W-A8YY-01 14 86088873 86088873 T C FLRT2 Missense_Mutation p.C339R 0.27 deleterious(0) possibly_damaging(0.889) TCGA-2W-A8YY-01 14 86089457 86089457 G A FLRT2 Silent p.T533T 0.46 TCGA-2W-A8YY-01 14 86089988 86089988 C T FLRT2 3'UTR 0.32 TCGA-2W-A8YY-01 14 86092297 86092297 G A FLRT2 3'UTR 0.38 TCGA-2W-A8YY-01 14 86092667 86092667 A G FLRT2 3'UTR 0.31 TCGA-2W-A8YY-01 14 86093581 86093581 A - FLRT2 3'UTR 0.23 TCGA-2W-A8YY-01 14 88414127 88414127 C T GALC Silent p.P478P 0.43 TCGA-2W-A8YY-01 14 88416255 88416255 C T GALC Silent p.Q424Q 0.35 TCGA-2W-A8YY-01 14 88431920 88431920 C T GALC Missense_Mutation p.R321K 0.13 tolerated(0.19) benign(0.137) TCGA-2W-A8YY-01 14 88450776 88450776 C T GALC Missense_Mutation p.A182T 0.35 deleterious(0) possibly_damaging(0.843) TCGA-2W-A8YY-01 14 88651626 88651626 T C KCNK10 3'UTR 0.41 TCGA-2W-A8YY-01 14 88651638 88651638 C T KCNK10 3'UTR 0.26 TCGA-2W-A8YY-01 14 88934128 88934128 C A PTPN21 3'UTR 0.32 TCGA-2W-A8YY-01 14 88945322 88945322 G A PTPN21 Missense_Mutation p.P818L 0.32 deleterious(0.01) benign(0.152) TCGA-2W-A8YY-01 14 88946368 88946368 G A PTPN21 Silent p.S469S 0.41 TCGA-2W-A8YY-01 14 89060998 89060998 C A ZC3H14 Intron 0.33 TCGA-2W-A8YY-01 14 89172706 89172706 A G EML5 Silent p.D574D 0.39 TCGA-2W-A8YY-01 14 89623850 89623850 G A FOXN3 3'UTR 0.30 TCGA-2W-A8YY-01 14 89624949 89624949 G A FOXN3 3'UTR 0.26 TCGA-2W-A8YY-01 14 89625347 89625347 T C FOXN3 3'UTR 0.29 TCGA-2W-A8YY-01 14 89628970 89628970 G A FOXN3 Missense_Mutation p.R421C 0.44 tolerated(0.08) possibly_damaging(0.841) TCGA-2W-A8YY-01 14 90420957 90420957 A G EFCAB11 Silent p.S16S 0.29 TCGA-2W-A8YY-01 14 90455335 90455335 C T TDP1 Silent p.A406A 0.35 TCGA-2W-A8YY-01 14 90459745 90459745 C T TDP1 Missense_Mutation p.R487C 0.54 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 14 90736626 90736626 C T PSMC1 Missense_Mutation p.T373M 0.47 tolerated(0.14) benign(0.042) TCGA-2W-A8YY-01 14 90744453 90744453 A G NRDE2 3'UTR 0.27 TCGA-2W-A8YY-01 14 90756653 90756653 C T NRDE2 Missense_Mutation p.R714H 0.34 tolerated(0.17) benign(0.016) TCGA-2W-A8YY-01 14 90798202 90798202 C T NRDE2 Missense_Mutation p.G16D 0.37 tolerated(0.49) benign(0.002) TCGA-2W-A8YY-01 14 90872524 90872524 T - CALM1 3'UTR 0.25 TCGA-2W-A8YY-01 14 90872708 90872708 T - CALM1 3'UTR 0.33 TCGA-2W-A8YY-01 14 90873518 90873519 - G CALM1 3'UTR 0.26 TCGA-2W-A8YY-01 14 90874008 90874008 C T CALM1 3'UTR 0.57 TCGA-2W-A8YY-01 14 91007561 91007561 G A TTC7B 3'UTR 0.32 TCGA-2W-A8YY-01 14 91123585 91123585 C T TTC7B Missense_Mutation p.R425H 0.23 tolerated(0.06) benign(0.018) TCGA-2W-A8YY-01 14 91389530 91389530 G A RPS6KA5 Missense_Mutation p.A210V 0.38 deleterious(0.03) possibly_damaging(0.837) TCGA-2W-A8YY-01 14 91626615 91626615 C A C14orf159 5'UTR 0.39 TCGA-2W-A8YY-01 14 91626637 91626637 C T C14orf159 5'UTR 0.36 TCGA-2W-A8YY-01 14 91662771 91662771 A C C14orf159 Missense_Mutation p.E416D 0.35 tolerated(0.66) benign(0.018) TCGA-2W-A8YY-01 14 91700491 91700491 C T GPR68 Missense_Mutation p.G302R 0.29 tolerated(0.75) benign(0.001) TCGA-2W-A8YY-01 14 91738950 91738950 G A CCDC88C 3'UTR 0.23 TCGA-2W-A8YY-01 14 91747847 91747847 G A CCDC88C Silent p.L1551L 0.47 TCGA-2W-A8YY-01 14 91779815 91779815 G A CCDC88C Missense_Mutation p.T782M 0.31 tolerated(0.06) benign(0.172) TCGA-2W-A8YY-01 14 91927925 91927925 G A SMEK1 Missense_Mutation p.L718F 0.42 tolerated(0.16) probably_damaging(0.991) TCGA-2W-A8YY-01 14 92413566 92413566 C T FBLN5 Missense_Mutation p.G3E 0.33 tolerated_low_confidence(0.15) benign(0.001) TCGA-2W-A8YY-01 14 92588113 92588113 G A NDUFB1 Silent p.C3C 0.34 TCGA-2W-A8YY-01 14 93151399 93151399 G A RIN3 Silent p.V845V 0.49 TCGA-2W-A8YY-01 14 93199001 93199001 C A LGMN Missense_Mutation p.R44M 0.09 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 14 93653352 93653352 A - TMEM251 3'UTR 0.19 TCGA-2W-A8YY-01 14 93676188 93676188 G T RP11-371E8.4 Missense_Mutation p.A76S 0.25 tolerated(0.18) possibly_damaging(0.614) TCGA-2W-A8YY-01 14 93706635 93706635 C T BTBD7 3'UTR 0.20 TCGA-2W-A8YY-01 14 93708880 93708880 A G BTBD7 Silent p.N1046N 0.26 TCGA-2W-A8YY-01 14 93760291 93760291 C T BTBD7 Missense_Mutation p.A359T 0.11 tolerated(0.43) benign(0.348) TCGA-2W-A8YY-01 14 93762483 93762483 G A BTBD7 5'UTR 0.35 TCGA-2W-A8YY-01 14 93962809 93962809 G T UNC79 Missense_Mutation p.W78C 0.37 tolerated(0.26) probably_damaging(0.997) TCGA-2W-A8YY-01 14 93998915 93998915 T C UNC79 Silent p.C194C 0.52 TCGA-2W-A8YY-01 14 94008990 94008990 G A UNC79 Missense_Mutation p.R391H 0.50 tolerated(1) probably_damaging(0.998) TCGA-2W-A8YY-01 14 94089033 94089033 G A UNC79 Silent p.K1641K 0.26 TCGA-2W-A8YY-01 14 94139711 94139711 C A UNC79 Missense_Mutation p.F2079L 0.29 tolerated(0.62) benign(0.007) TCGA-2W-A8YY-01 14 94156602 94156602 G A UNC79 Missense_Mutation p.A2271T 0.11 tolerated(0.05) possibly_damaging(0.705) TCGA-2W-A8YY-01 14 94173515 94173515 T - UNC79 3'UTR 0.19 TCGA-2W-A8YY-01 14 94404079 94404079 C T ASB2 Missense_Mutation p.S579N 0.42 tolerated(0.06) benign(0.411) TCGA-2W-A8YY-01 14 94405570 94405570 C T ASB2 Missense_Mutation p.D501N 0.22 tolerated(0.14) benign(0.113) TCGA-2W-A8YY-01 14 94503789 94503789 C G OTUB2 Missense_Mutation p.P23A 0.24 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 14 94568867 94568867 G A IFI27L1 Missense_Mutation p.A90T 0.32 tolerated(0.32) possibly_damaging(0.787) TCGA-2W-A8YY-01 14 94696972 94696972 T C PPP4R4 Missense_Mutation p.S115P 0.45 deleterious(0.01) possibly_damaging(0.746) TCGA-2W-A8YY-01 14 94711006 94711006 T C PPP4R4 Missense_Mutation p.I434T 0.39 deleterious(0) probably_damaging(0.963) TCGA-2W-A8YY-01 14 94752499 94752499 G T SERPINA10 Silent p.P363P 0.43 TCGA-2W-A8YY-01 14 94845789 94845789 G A SERPINA1 Intron 0.35 TCGA-2W-A8YY-01 14 94914820 94914820 G A SERPINA11 Silent p.L98L 0.34 TCGA-2W-A8YY-01 14 94914942 94914942 A C SERPINA11 Missense_Mutation p.F57C 0.24 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 14 94962899 94962899 G A SERPINA12 Missense_Mutation p.P239L 0.30 deleterious(0.01) probably_damaging(0.923) TCGA-2W-A8YY-01 14 94964350 94964350 C T SERPINA12 Missense_Mutation p.D129N 0.32 tolerated(0.18) benign(0.046) TCGA-2W-A8YY-01 14 95030153 95030153 C T SERPINA4 Silent p.L112L 0.25 TCGA-2W-A8YY-01 14 95054153 95054153 C T SERPINA5 Silent p.L152L 0.46 TCGA-2W-A8YY-01 14 95081333 95081333 G A SERPINA3 Silent p.K185K 0.41 TCGA-2W-A8YY-01 14 95111311 95111312 - C SERPINA13P RNA 0.34 TCGA-2W-A8YY-01 14 95555249 95555249 C A DICER1 3'UTR 0.39 TCGA-2W-A8YY-01 14 95556937 95556937 T - DICER1 Frame_Shift_Del p.K1889Nfs*39 0.32 TCGA-2W-A8YY-01 14 95569899 95569899 C T DICER1 Silent p.E1278E 0.38 TCGA-2W-A8YY-01 14 95577730 95577730 T C DICER1 Missense_Mutation p.D727G 0.42 deleterious(0.03) probably_damaging(0.998) TCGA-2W-A8YY-01 14 95884214 95884214 G A SYNE3 Silent p.F959F 0.30 TCGA-2W-A8YY-01 14 95899701 95899701 G T SYNE3 Missense_Mutation p.L862I 0.30 deleterious(0.02) possibly_damaging(0.589) TCGA-2W-A8YY-01 14 95910731 95910731 T C SYNE3 Intron 0.34 TCGA-2W-A8YY-01 14 95916417 95916417 G A SYNE3 Missense_Mutation p.R434C 0.28 tolerated(0.25) benign(0) TCGA-2W-A8YY-01 14 96751969 96751969 A - ATG2B 3'UTR 0.39 TCGA-2W-A8YY-01 14 96788458 96788458 A C ATG2B Missense_Mutation p.L957R 0.19 deleterious(0) possibly_damaging(0.77) TCGA-2W-A8YY-01 14 97018879 97018879 C T PAPOLA Silent p.D528D 0.56 TCGA-2W-A8YY-01 14 99637385 99637385 G A BCL11B 3'UTR 0.30 TCGA-2W-A8YY-01 14 99639853 99639853 C T BCL11B 3'UTR 0.23 TCGA-2W-A8YY-01 14 99640479 99640479 C T BCL11B 3'UTR 0.47 TCGA-2W-A8YY-01 14 99723904 99723904 C T BCL11B Missense_Mutation p.E111K 0.35 tolerated(0.42) benign(0) TCGA-2W-A8YY-01 14 99864616 99864616 G A SETD3 3'UTR 0.38 TCGA-2W-A8YY-01 14 99929858 99929858 C T SETD3 Missense_Mutation p.R54Q 0.47 tolerated(0.09) possibly_damaging(0.472) TCGA-2W-A8YY-01 14 99929904 99929904 G A SETD3 Missense_Mutation p.P39S 0.31 tolerated(0.15) possibly_damaging(0.462) TCGA-2W-A8YY-01 14 99976602 99976603 - A CCNK Frame_Shift_Ins p.V410Cfs*174 0.22 TCGA-2W-A8YY-01 14 99976687 99976687 C A CCNK Silent p.S437S 0.42 TCGA-2W-A8YY-01 14 99977128 99977128 T - CCNK 3'UTR 0.26 TCGA-2W-A8YY-01 14 99977217 99977217 C T CCNK 3'UTR 0.31 TCGA-2W-A8YY-01 15 100211858 100211858 T C MEF2A Missense_Mutation p.I131T 0.35 tolerated(0.08) benign(0.025) TCGA-2W-A8YY-01 15 100256647 100256647 T G DKFZP779J2370 Missense_Mutation p.K119T 0.15 unknown(0) TCGA-2W-A8YY-01 15 100533337 100533337 G A ADAMTS17 Silent p.C955C 0.38 TCGA-2W-A8YY-01 15 100692904 100692904 C T ADAMTS17 Silent p.P462P 0.40 TCGA-2W-A8YY-01 15 100695488 100695488 C T ADAMTS17 Missense_Mutation p.A407T 0.42 tolerated(0.13) possibly_damaging(0.503) TCGA-2W-A8YY-01 15 101109894 101109894 C T LINS Missense_Mutation p.G608E 0.10 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 15 101152486 101152486 T C ASB7 Missense_Mutation p.V22A 0.26 tolerated(0.98) possibly_damaging(0.575) TCGA-2W-A8YY-01 15 101169786 101169786 C T ASB7 Missense_Mutation p.T119I 0.24 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 15 101170334 101170334 C T ASB7 Intron 0.38 TCGA-2W-A8YY-01 15 101523782 101523782 G A LRRK1 Missense_Mutation p.R104H 0.36 tolerated(0.17) possibly_damaging(0.647) TCGA-2W-A8YY-01 15 101523870 101523870 G A LRRK1 Silent p.T133T 0.75 TCGA-2W-A8YY-01 15 101528966 101528966 G A LRRK1 Silent p.K187K 0.41 TCGA-2W-A8YY-01 15 101569172 101569172 C T LRRK1 Missense_Mutation p.L900F 0.31 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 15 101605701 101605701 C T LRRK1 Missense_Mutation p.R1687W 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 101606928 101606928 G A LRRK1 Missense_Mutation p.R1951Q 0.38 tolerated(0.49) benign(0.406) TCGA-2W-A8YY-01 15 101717122 101717122 A G CHSY1 3'UTR 0.33 TCGA-2W-A8YY-01 15 101717569 101717569 C T CHSY1 3'UTR 0.48 TCGA-2W-A8YY-01 15 101718845 101718845 G A CHSY1 Missense_Mutation p.S386L 0.40 deleterious(0) benign(0.4) TCGA-2W-A8YY-01 15 101775430 101775430 C T CHSY1 Missense_Mutation p.V225M 0.51 tolerated(0.87) benign(0.041) TCGA-2W-A8YY-01 15 101775630 101775630 T C CHSY1 Missense_Mutation p.D158G 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 101835305 101835305 G A SNRPA1 Missense_Mutation p.R27W 0.34 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 15 102300714 102300714 C T DNM1P47 RNA 0.11 TCGA-2W-A8YY-01 15 102304860 102304860 T G DNM1P47 RNA 0.53 TCGA-2W-A8YY-01 15 102506351 102506351 G A MIR1302-11 5'Flank 0.10 TCGA-2W-A8YY-01 15 102516510 102516510 C T WASH3P 3'Flank 0.07 TCGA-2W-A8YY-01 15 20645763 20645763 C T HERC2P3 RNA 0.11 TCGA-2W-A8YY-01 15 22855283 22855283 G A TUBGCP5 Missense_Mutation p.A582T 0.32 tolerated(0.65) benign(0.088) TCGA-2W-A8YY-01 15 22993100 22993100 A T CYFIP1 Missense_Mutation p.N996I 0.14 tolerated(0.08) benign(0.083) TCGA-2W-A8YY-01 15 23000099 23000099 G A CYFIP1 Silent p.Q1151Q 0.40 TCGA-2W-A8YY-01 15 23000103 23000103 T G CYFIP1 Missense_Mutation p.F1153V 0.09 deleterious(0.02) benign(0.163) TCGA-2W-A8YY-01 15 23002965 23002965 C T CYFIP1 Silent p.G1229G 0.30 TCGA-2W-A8YY-01 15 23261793 23261793 T C GOLGA8I Missense_Mutation p.V302A 0.17 tolerated(0.95) possibly_damaging(0.769) TCGA-2W-A8YY-01 15 23311821 23311821 G A HERC2P2 RNA 0.10 TCGA-2W-A8YY-01 15 23326076 23326076 G T HERC2P2 RNA 0.33 TCGA-2W-A8YY-01 15 23439179 23439179 C T RN7SL106P 5'Flank 0.21 TCGA-2W-A8YY-01 15 23811877 23811877 G A MKRN3 Silent p.E316E 0.34 TCGA-2W-A8YY-01 15 23890764 23890764 C T MAGEL2 Missense_Mutation p.G106D 0.21 tolerated_low_confidence(0.09) benign(0.225) TCGA-2W-A8YY-01 15 23891106 23891106 G A MAGEL2 5'UTR 0.46 TCGA-2W-A8YY-01 15 24924576 24924576 C T NPAP1 3'UTR 0.61 TCGA-2W-A8YY-01 15 24925562 24925562 G A NPAP1 3'UTR 0.39 TCGA-2W-A8YY-01 15 25207298 25207298 G A SNURF Missense_Mutation p.V18I 0.43 tolerated_low_confidence(0.6) benign(0.004) TCGA-2W-A8YY-01 15 25213186 25213186 G T SNRPN 5'UTR 0.12 TCGA-2W-A8YY-01 15 25225154 25225154 G T SNRPN 3'Flank 0.30 TCGA-2W-A8YY-01 15 25322259 25322259 C A SNORD116-12 RNA 0.28 TCGA-2W-A8YY-01 15 25448250 25448250 G A SNORD115-20 5'Flank 0.48 TCGA-2W-A8YY-01 15 25615854 25615854 T C UBE3A Silent p.G492G 0.32 TCGA-2W-A8YY-01 15 25616065 25616065 C T UBE3A Missense_Mutation p.G422D 0.39 tolerated(0.58) benign(0.032) TCGA-2W-A8YY-01 15 25620768 25620768 C A UBE3A Missense_Mutation p.A72S 0.32 tolerated(0.08) possibly_damaging(0.831) TCGA-2W-A8YY-01 15 25932915 25932915 G T ATP10A Missense_Mutation p.L1076I 0.49 deleterious(0) benign(0) TCGA-2W-A8YY-01 15 25939999 25939999 G A ATP10A Missense_Mutation p.R1019W 0.41 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 15 25953414 25953414 C T ATP10A Missense_Mutation p.R793Q 0.10 tolerated(0.36) benign(0.03) TCGA-2W-A8YY-01 15 26026292 26026292 G T ATP10A Silent p.I176I 0.30 TCGA-2W-A8YY-01 15 26793122 26793122 G A GABRB3 Nonsense_Mutation p.R414* 0.34 TCGA-2W-A8YY-01 15 26825472 26825472 C T GABRB3 Missense_Mutation p.A226T 0.43 tolerated(0.49) benign(0.037) TCGA-2W-A8YY-01 15 27017608 27017608 C T GABRB3 Missense_Mutation p.V61I 0.11 tolerated(0.07) benign(0.345) TCGA-2W-A8YY-01 15 27018095 27018095 C T GABRB3 Silent p.A5A 0.43 TCGA-2W-A8YY-01 15 27128335 27128335 C T GABRA5 Silent p.T77T 0.34 TCGA-2W-A8YY-01 15 27193212 27193212 C A GABRA5 Silent p.P407P 0.46 TCGA-2W-A8YY-01 15 27271921 27271921 G A GABRG3 Missense_Mutation p.V75I 0.31 deleterious(0.04) benign(0.02) TCGA-2W-A8YY-01 15 27772656 27772656 G A GABRG3 Missense_Mutation p.A315T 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 15 28090140 28090140 C T OCA2 Silent p.Q799Q 0.31 TCGA-2W-A8YY-01 15 28116384 28116384 G A OCA2 Silent p.R720R 0.33 TCGA-2W-A8YY-01 15 28259996 28259996 G A OCA2 Missense_Mutation p.R324C 0.28 deleterious(0.03) possibly_damaging(0.582) TCGA-2W-A8YY-01 15 28356811 28356811 G A HERC2 3'UTR 0.29 TCGA-2W-A8YY-01 15 28356851 28356851 G T HERC2 3'UTR 0.46 TCGA-2W-A8YY-01 15 28370177 28370177 G A HERC2 Missense_Mutation p.A4322V 0.46 benign(0.007) TCGA-2W-A8YY-01 15 28389080 28389080 A G HERC2 Missense_Mutation p.F3786S 0.31 benign(0.009) TCGA-2W-A8YY-01 15 28389292 28389292 C T HERC2 Missense_Mutation p.A3744T 0.41 benign(0.05) TCGA-2W-A8YY-01 15 28447379 28447379 G A HERC2 Silent p.V2499V 0.08 TCGA-2W-A8YY-01 15 28447586 28447586 C T HERC2 Missense_Mutation p.V2463M 0.27 benign(0.031) TCGA-2W-A8YY-01 15 28473434 28473434 G A HERC2 Silent p.G1798G 0.31 TCGA-2W-A8YY-01 15 29346116 29346116 G A APBA2 Missense_Mutation p.G10E 0.25 deleterious_low_confidence(0.02) benign(0.04) TCGA-2W-A8YY-01 15 29409511 29409511 G A APBA2 3'UTR 0.33 TCGA-2W-A8YY-01 15 29415586 29415586 C T FAM189A1 Missense_Mutation p.E526K 0.40 deleterious(0) benign(0.031) TCGA-2W-A8YY-01 15 29416943 29416943 G A FAM189A1 Missense_Mutation p.P417L 0.30 tolerated(0.41) benign(0.002) TCGA-2W-A8YY-01 15 29992416 29992416 A C TJP1 3'UTR 0.41 TCGA-2W-A8YY-01 15 29993499 29993499 G A TJP1 3'UTR 0.41 TCGA-2W-A8YY-01 15 29996437 29996437 C T TJP1 Missense_Mutation p.R1714H 0.09 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 30008888 30008888 C T TJP1 Missense_Mutation p.A1377T 0.46 tolerated_low_confidence(0.27) benign(0.002) TCGA-2W-A8YY-01 15 30008906 30008906 G A TJP1 Missense_Mutation p.P1371S 0.23 tolerated_low_confidence(0.11) possibly_damaging(0.722) TCGA-2W-A8YY-01 15 30008951 30008951 G A TJP1 Nonsense_Mutation p.R1356* 0.09 TCGA-2W-A8YY-01 15 30018681 30018681 T C TJP1 Missense_Mutation p.T772A 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-2W-A8YY-01 15 30019169 30019169 T C TJP1 Silent p.T709T 0.08 TCGA-2W-A8YY-01 15 30029527 30029527 C T TJP1 Missense_Mutation p.V450I 0.41 tolerated(0.1) possibly_damaging(0.844) TCGA-2W-A8YY-01 15 30034980 30034980 C T TJP1 Missense_Mutation p.R339Q 0.28 deleterious(0.01) possibly_damaging(0.475) TCGA-2W-A8YY-01 15 30053396 30053396 C T TJP1 Missense_Mutation p.R319Q 0.39 deleterious(0.05) benign(0.086) TCGA-2W-A8YY-01 15 31196838 31196838 G A FAN1 5'UTR 0.33 TCGA-2W-A8YY-01 15 31198077 31198077 T C FAN1 Missense_Mutation p.V404A 0.20 deleterious(0) benign(0.242) TCGA-2W-A8YY-01 15 31214459 31214459 A C FAN1 Missense_Mutation p.S692R 0.37 tolerated(0.29) benign(0.014) TCGA-2W-A8YY-01 15 31235141 31235141 G A MTMR10 Silent p.S561S 0.34 TCGA-2W-A8YY-01 15 31245780 31245780 C T MTMR10 Nonsense_Mutation p.W374* 0.42 TCGA-2W-A8YY-01 15 31245831 31245831 G A MTMR10 Missense_Mutation p.P357L 0.27 tolerated(0.16) benign(0.394) TCGA-2W-A8YY-01 15 31283506 31283506 C T MTMR10 Intron 0.43 TCGA-2W-A8YY-01 15 31294402 31294402 G A TRPM1 Missense_Mutation p.R1518C 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.794) TCGA-2W-A8YY-01 15 31294470 31294470 A G TRPM1 Missense_Mutation p.V1495A 0.37 tolerated_low_confidence(1) benign(0) TCGA-2W-A8YY-01 15 31318377 31318377 C T TRPM1 Silent p.S1215S 0.47 TCGA-2W-A8YY-01 15 31323354 31323354 C T TRPM1 Missense_Mutation p.D1004N 0.37 tolerated(1) probably_damaging(0.932) TCGA-2W-A8YY-01 15 31355482 31355482 G A TRPM1 Silent p.G285G 0.36 TCGA-2W-A8YY-01 15 31360173 31360173 C T TRPM1 Missense_Mutation p.M151I 0.47 deleterious(0.03) benign(0.094) TCGA-2W-A8YY-01 15 31362019 31362019 G A TRPM1 Intron 0.45 TCGA-2W-A8YY-01 15 31666581 31666581 C T KLF13 3'UTR 0.62 TCGA-2W-A8YY-01 15 31669422 31669422 C T KLF13 3'UTR 0.50 TCGA-2W-A8YY-01 15 31669620 31669620 C T KLF13 3'UTR 0.44 TCGA-2W-A8YY-01 15 31776844 31776844 G A OTUD7A Silent p.R478R 0.28 TCGA-2W-A8YY-01 15 32323114 32323114 C T CHRNA7 Silent p.G52G 0.10 TCGA-2W-A8YY-01 15 32815214 32815214 C T RP11-632K20.7 RNA 0.43 TCGA-2W-A8YY-01 15 32935923 32935923 C T SCG5 Missense_Mutation p.L44F 0.53 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-2W-A8YY-01 15 32976851 32976851 A G SCG5 Missense_Mutation p.Y157C 0.22 tolerated(0.11) probably_damaging(0.968) TCGA-2W-A8YY-01 15 33023482 33023482 G A GREM1 3'UTR 0.27 TCGA-2W-A8YY-01 15 33023906 33023906 C T GREM1 3'UTR 0.43 TCGA-2W-A8YY-01 15 33023949 33023949 G A GREM1 3'UTR 0.35 TCGA-2W-A8YY-01 15 33024703 33024703 G A GREM1 3'UTR 0.34 TCGA-2W-A8YY-01 15 33091138 33091138 G A FMN1 Nonsense_Mutation p.R1110* 0.57 TCGA-2W-A8YY-01 15 33261033 33261033 G T FMN1 Missense_Mutation p.P734T 0.33 deleterious_low_confidence(0.02) unknown(0) TCGA-2W-A8YY-01 15 33359773 33359773 C T FMN1 Missense_Mutation p.E105K 0.20 tolerated_low_confidence(0.21) unknown(0) TCGA-2W-A8YY-01 15 33878221 33878221 C T RYR3 Silent p.C564C 0.42 TCGA-2W-A8YY-01 15 33926811 33926811 C T RYR3 Missense_Mutation p.R1018C 0.41 probably_damaging(0.987) TCGA-2W-A8YY-01 15 33944966 33944966 C T RYR3 Missense_Mutation p.A1397V 0.31 benign(0.007) TCGA-2W-A8YY-01 15 34078036 34078036 C T RYR3 Missense_Mutation p.R3148W 0.33 benign(0.001) TCGA-2W-A8YY-01 15 34078175 34078175 G A RYR3 Missense_Mutation p.R3194H 0.39 probably_damaging(0.986) TCGA-2W-A8YY-01 15 34130480 34130480 C T RYR3 Missense_Mutation p.S4100F 0.42 possibly_damaging(0.905) TCGA-2W-A8YY-01 15 34158136 34158136 T C RYR3 3'UTR 0.25 TCGA-2W-A8YY-01 15 34295343 34295343 C A AVEN Missense_Mutation p.R112I 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 34434311 34434311 C A KATNBL1 3'UTR 0.42 TCGA-2W-A8YY-01 15 34445217 34445217 C T KATNBL1 Missense_Mutation p.R71H 0.47 tolerated(0.61) benign(0) TCGA-2W-A8YY-01 15 34548433 34548433 G A SLC12A6 Missense_Mutation p.P248S 0.29 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 15 34551142 34551142 C A SLC12A6 Nonsense_Mutation p.E139* 0.37 TCGA-2W-A8YY-01 15 34634040 34634040 C T NOP10 3'UTR 0.36 TCGA-2W-A8YY-01 15 34642970 34642970 C T NUTM1 Missense_Mutation p.A264V 0.30 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 34651143 34651143 G T LPCAT4 3'UTR 0.08 TCGA-2W-A8YY-01 15 34655909 34655909 C T LPCAT4 Missense_Mutation p.A222T 0.10 deleterious(0.03) possibly_damaging(0.713) TCGA-2W-A8YY-01 15 34657216 34657216 G A LPCAT4 Silent p.V157V 0.20 TCGA-2W-A8YY-01 15 34671634 34671634 G A GOLGA8A 3'UTR 0.71 TCGA-2W-A8YY-01 15 34673785 34673785 C T GOLGA8A Missense_Mutation p.V547M 0.61 tolerated(0.33) benign(0.21) TCGA-2W-A8YY-01 15 35044792 35044792 G A GJD2 Nonsense_Mutation p.R285* 0.29 TCGA-2W-A8YY-01 15 35044825 35044825 G T GJD2 Missense_Mutation p.H274N 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 35189760 35189760 C T AQR Missense_Mutation p.R797H 0.35 deleterious(0.01) possibly_damaging(0.648) TCGA-2W-A8YY-01 15 35189837 35189837 G A AQR Silent p.T771T 0.51 TCGA-2W-A8YY-01 15 35198758 35198758 C T AQR Missense_Mutation p.V607I 0.35 tolerated(0.12) benign(0.172) TCGA-2W-A8YY-01 15 35240585 35240585 G A AQR Silent p.S70S 0.22 TCGA-2W-A8YY-01 15 35273759 35273759 C T ZNF770 Missense_Mutation p.R626Q 0.38 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 15 35275166 35275166 T G ZNF770 Missense_Mutation p.K157T 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 15 35529965 35529965 G A ANP32AP1 RNA 0.35 TCGA-2W-A8YY-01 15 35664175 35664175 G A DPH6 3'UTR 0.33 TCGA-2W-A8YY-01 15 37109402 37109402 C T CSNK1A1P1 RNA 0.39 TCGA-2W-A8YY-01 15 37385841 37385841 C T MEIS2 Missense_Mutation p.G194S 0.40 tolerated(0.12) benign(0.206) TCGA-2W-A8YY-01 15 37390199 37390199 C T MEIS2 Missense_Mutation p.A72T 0.36 tolerated(0.09) benign(0.02) TCGA-2W-A8YY-01 15 37391452 37391452 C T MEIS2 Intron 0.23 TCGA-2W-A8YY-01 15 37391840 37391840 G A MEIS2 5'UTR 0.18 TCGA-2W-A8YY-01 15 38632079 38632079 C A SPRED1 Missense_Mutation p.Q189K 0.41 tolerated(0.69) benign(0.008) TCGA-2W-A8YY-01 15 38643282 38643282 G A SPRED1 Missense_Mutation p.R251Q 0.33 deleterious(0.03) benign(0.354) TCGA-2W-A8YY-01 15 38644621 38644621 C A SPRED1 3'UTR 0.39 TCGA-2W-A8YY-01 15 38756314 38756314 C T FAM98B Silent p.L51L 0.44 TCGA-2W-A8YY-01 15 38805125 38805125 G T RASGRP1 Missense_Mutation p.S236R 0.53 deleterious(0.03) benign(0.014) TCGA-2W-A8YY-01 15 38990488 38990488 C T C15orf53 Silent p.V94V 0.35 TCGA-2W-A8YY-01 15 39545432 39545432 T G C15orf54 3'UTR 0.33 TCGA-2W-A8YY-01 15 39874833 39874833 C T THBS1 Silent p.I169I 0.40 TCGA-2W-A8YY-01 15 39885202 39885202 C T THBS1 Silent p.G923G 0.36 TCGA-2W-A8YY-01 15 39885650 39885650 C T THBS1 Silent p.T1016T 0.37 TCGA-2W-A8YY-01 15 39886363 39886363 C T THBS1 Missense_Mutation p.R1111C 0.42 deleterious(0.02) probably_damaging(0.914) TCGA-2W-A8YY-01 15 39910264 39910264 T G FSIP1 Missense_Mutation p.E457D 0.37 tolerated(0.25) benign(0.211) TCGA-2W-A8YY-01 15 40093847 40093847 C T GPR176 Missense_Mutation p.R345H 0.42 tolerated(0.07) probably_damaging(0.999) TCGA-2W-A8YY-01 15 40318214 40318214 C T EIF2AK4 Missense_Mutation p.R1476C 0.38 deleterious(0.02) benign(0.112) TCGA-2W-A8YY-01 15 40358313 40358313 C T SRP14-AS1 RNA 0.41 TCGA-2W-A8YY-01 15 40476035 40476035 G A BUB1B Silent p.G234G 0.32 TCGA-2W-A8YY-01 15 40558504 40558504 T C PAK6 Silent p.H222H 0.30 TCGA-2W-A8YY-01 15 40568669 40568669 G A PAK6 3'UTR 0.11 TCGA-2W-A8YY-01 15 40585873 40585873 A G PLCB2 Missense_Mutation p.V705A 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 40586505 40586505 G A PLCB2 Missense_Mutation p.R675C 0.29 tolerated(0.05) possibly_damaging(0.849) TCGA-2W-A8YY-01 15 40629960 40629960 C T C15orf52 Nonsense_Mutation p.W260* 0.30 TCGA-2W-A8YY-01 15 40659263 40659263 G A DISP2 Missense_Mutation p.R317H 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 40660890 40660890 C T DISP2 Silent p.C859C 0.33 TCGA-2W-A8YY-01 15 40710473 40710473 C A IVD 3'UTR 0.30 TCGA-2W-A8YY-01 15 40751177 40751177 C T BAHD1 Missense_Mutation p.R172W 0.44 deleterious(0) possibly_damaging(0.76) TCGA-2W-A8YY-01 15 40759708 40759708 G A BAHD1 3'UTR 0.45 TCGA-2W-A8YY-01 15 40764970 40764970 T C CHST14 3'UTR 0.41 TCGA-2W-A8YY-01 15 40913523 40913523 G A CASC5 Missense_Mutation p.G380E 0.42 tolerated(0.41) benign(0.031) TCGA-2W-A8YY-01 15 40916492 40916492 G A CASC5 Missense_Mutation p.D1370N 0.20 tolerated(0.74) benign(0.004) TCGA-2W-A8YY-01 15 41037243 41037243 C T RMDN3 Missense_Mutation p.E247K 0.32 tolerated(0.77) benign(0.071) TCGA-2W-A8YY-01 15 41191908 41191908 G A VPS18 Missense_Mutation p.D298N 0.36 tolerated(0.11) possibly_damaging(0.53) TCGA-2W-A8YY-01 15 41195117 41195117 C T VPS18 Missense_Mutation p.R834W 0.38 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 15 41482238 41482238 C T EXD1 Missense_Mutation p.R260H 0.34 tolerated(0.19) possibly_damaging(0.788) TCGA-2W-A8YY-01 15 41663759 41663759 C T NUSAP1 Missense_Mutation p.R295C 0.27 deleterious(0.05) benign(0.121) TCGA-2W-A8YY-01 15 41763470 41763470 C T RTF1 Missense_Mutation p.P376S 0.21 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 41769445 41769445 C T RTF1 Missense_Mutation p.A548V 0.30 tolerated(0.09) benign(0.395) TCGA-2W-A8YY-01 15 41774903 41774903 G A RTF1 3'UTR 0.53 TCGA-2W-A8YY-01 15 41812651 41812651 G A RPAP1 Missense_Mutation p.R1245C 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 41815064 41815064 G A RPAP1 Missense_Mutation p.R881C 0.40 deleterious(0.03) benign(0.163) TCGA-2W-A8YY-01 15 41816140 41816140 G A RPAP1 Silent p.T755T 0.17 TCGA-2W-A8YY-01 15 41819230 41819230 G A RPAP1 Nonsense_Mutation p.R595* 0.32 TCGA-2W-A8YY-01 15 41821677 41821677 C A RPAP1 Missense_Mutation p.E383D 0.40 tolerated(0.14) possibly_damaging(0.704) TCGA-2W-A8YY-01 15 41862823 41862823 A G TYRO3 Missense_Mutation p.D502G 0.14 deleterious(0.01) benign(0.271) TCGA-2W-A8YY-01 15 41865995 41865995 C T TYRO3 Missense_Mutation p.P755L 0.36 tolerated(0.15) benign(0.081) TCGA-2W-A8YY-01 15 41961214 41961214 T G MGA Missense_Mutation p.L41W 0.32 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 15 41988727 41988727 T G MGA Missense_Mutation p.Y507D 0.28 tolerated(0.24) possibly_damaging(0.696) TCGA-2W-A8YY-01 15 41988997 41988997 G A MGA Missense_Mutation p.A597T 0.33 tolerated(0.6) benign(0) TCGA-2W-A8YY-01 15 42034750 42034750 G A MGA Missense_Mutation p.R1531Q 0.42 tolerated(0.11) benign(0.27) TCGA-2W-A8YY-01 15 42042025 42042025 C T MGA Missense_Mutation p.R2074C 0.29 tolerated_low_confidence(0.05) benign(0.029) TCGA-2W-A8YY-01 15 42105923 42105923 C T MAPKBP1 Silent p.S314S 0.44 TCGA-2W-A8YY-01 15 42115399 42115399 G C MAPKBP1 Missense_Mutation p.V1199L 0.24 tolerated(0.08) benign(0.008) TCGA-2W-A8YY-01 15 42117497 42117497 G A MAPKBP1 Missense_Mutation p.A1470T 0.21 tolerated(0.15) benign(0.005) TCGA-2W-A8YY-01 15 42117713 42117713 C T MAPKBP1 3'UTR 0.27 TCGA-2W-A8YY-01 15 42118563 42118563 G A MAPKBP1 3'UTR 0.50 TCGA-2W-A8YY-01 15 42129387 42129387 C T JMJD7 3'UTR 0.53 TCGA-2W-A8YY-01 15 42138985 42138985 C T PLA2G4B Silent p.D864D 0.27 TCGA-2W-A8YY-01 15 42145134 42145134 C T SPTBN5 Missense_Mutation p.R3412H 0.30 benign(0.023) TCGA-2W-A8YY-01 15 42192957 42192957 G A EHD4 Silent p.F504F 0.33 TCGA-2W-A8YY-01 15 42235354 42235354 C T EHD4 Missense_Mutation p.C141Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 15 42279516 42279516 G A PLA2G4E Missense_Mutation p.T630M 0.24 tolerated(0.21) probably_damaging(0.94) TCGA-2W-A8YY-01 15 42433458 42433458 G A PLA2G4F 3'UTR 0.46 TCGA-2W-A8YY-01 15 42481358 42481358 G A VPS39 Missense_Mutation p.T99M 0.26 tolerated(0.1) benign(0.064) TCGA-2W-A8YY-01 15 42618562 42618562 G A GANC Missense_Mutation p.D454N 0.33 benign(0.102) TCGA-2W-A8YY-01 15 42717173 42717173 G A ZNF106 Silent p.S1660S 0.39 TCGA-2W-A8YY-01 15 42730854 42730854 G A ZNF106 Missense_Mutation p.T1496I 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-2W-A8YY-01 15 42764452 42764452 G A ZNF106 Silent p.I12I 0.44 TCGA-2W-A8YY-01 15 42858876 42858876 G A HAUS2 Nonsense_Mutation p.W190* 0.24 TCGA-2W-A8YY-01 15 42983437 42983437 G A STARD9 Missense_Mutation p.G3221S 0.33 benign(0.406) TCGA-2W-A8YY-01 15 42984483 42984483 C T STARD9 Silent p.P3569P 0.32 TCGA-2W-A8YY-01 15 43258382 43258386 AAGTA - UBR1 Frame_Shift_Del p.L1519Wfs*6 0.44 TCGA-2W-A8YY-01 15 43262779 43262779 C A UBR1 Missense_Mutation p.D1466Y 0.25 deleterious(0.03) benign(0.002) TCGA-2W-A8YY-01 15 43330421 43330421 A G UBR1 Missense_Mutation p.V620A 0.28 tolerated(0.1) benign(0.063) TCGA-2W-A8YY-01 15 43501522 43501522 C T EPB42 Missense_Mutation p.R291Q 0.30 tolerated(0.41) benign(0.103) TCGA-2W-A8YY-01 15 43577148 43577148 T C TGM7 Missense_Mutation p.M290V 0.38 deleterious(0) benign(0.422) TCGA-2W-A8YY-01 15 43661295 43661295 G A ZSCAN29 Missense_Mutation p.R117C 0.41 tolerated(0.11) benign(0.001) TCGA-2W-A8YY-01 15 43675524 43675524 T C TUBGCP4 Missense_Mutation p.V182A 0.28 tolerated(0.11) benign(0.071) TCGA-2W-A8YY-01 15 43675643 43675643 G A TUBGCP4 Missense_Mutation p.E222K 0.09 deleterious(0.03) benign(0.01) TCGA-2W-A8YY-01 15 43701248 43701248 C T TP53BP1 Missense_Mutation p.R1816Q 0.26 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 15 43815177 43815177 C T MAP1A Silent p.P502P 0.32 TCGA-2W-A8YY-01 15 43816462 43816462 G A MAP1A Missense_Mutation p.G931S 0.27 benign(0.094) TCGA-2W-A8YY-01 15 43821124 43821124 C T MAP1A Missense_Mutation p.P2485S 0.33 benign(0.008) TCGA-2W-A8YY-01 15 44028197 44028197 G A RNU6-354P 5'Flank 0.31 TCGA-2W-A8YY-01 15 44058195 44058195 A G PDIA3 Missense_Mutation p.N277S 0.12 deleterious(0.03) possibly_damaging(0.788) TCGA-2W-A8YY-01 15 44097324 44097324 G A MFAP1 Missense_Mutation p.R430W 0.30 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 15 44216405 44216405 G A FRMD5 Missense_Mutation p.R69W 0.51 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 44581283 44581283 T G CASC4 Missense_Mutation p.V19G 0.40 deleterious(0) benign(0.301) TCGA-2W-A8YY-01 15 44862773 44862773 G A SPG11 Missense_Mutation p.H2143Y 0.33 deleterious(0.02) benign(0.005) TCGA-2W-A8YY-01 15 44876279 44876279 C T SPG11 Missense_Mutation p.E1867K 0.31 tolerated(0.19) benign(0) TCGA-2W-A8YY-01 15 44905628 44905628 C T SPG11 Missense_Mutation p.D1049N 0.38 deleterious(0.03) possibly_damaging(0.908) TCGA-2W-A8YY-01 15 44944454 44944454 C A SPG11 Nonsense_Mutation p.G294* 0.52 TCGA-2W-A8YY-01 15 45047562 45047562 C T TRIM69 Silent p.V157V 0.09 TCGA-2W-A8YY-01 15 45048611 45048611 G T TRIM69 Nonsense_Mutation p.E177* 0.09 TCGA-2W-A8YY-01 15 45248913 45248913 C T C15orf43 5'UTR 0.43 TCGA-2W-A8YY-01 15 45365739 45365739 C A SORD 3'UTR 0.09 TCGA-2W-A8YY-01 15 45404040 45404040 C T DUOX2 Missense_Mutation p.D147N 0.27 tolerated(0.28) benign(0.057) TCGA-2W-A8YY-01 15 45428554 45428554 G A DUOX1 Missense_Mutation p.A291T 0.24 tolerated(0.07) benign(0.009) TCGA-2W-A8YY-01 15 45434241 45434241 C T DUOX1 Missense_Mutation p.R585C 0.30 deleterious(0.04) benign(0.058) TCGA-2W-A8YY-01 15 45436370 45436370 C T DUOX1 Silent p.F691F 0.13 TCGA-2W-A8YY-01 15 45460190 45460190 G A SHF Silent p.A409A 0.35 TCGA-2W-A8YY-01 15 45697675 45697675 C T SPATA5L1 Missense_Mutation p.A416V 0.33 deleterious(0.01) possibly_damaging(0.882) TCGA-2W-A8YY-01 15 45803443 45803443 G A SLC30A4 Missense_Mutation p.A144V 0.43 deleterious(0) possibly_damaging(0.866) TCGA-2W-A8YY-01 15 48065758 48065758 G A SEMA6D 3'UTR 0.42 TCGA-2W-A8YY-01 15 48433329 48433329 C T SLC24A5 Silent p.P366P 0.26 TCGA-2W-A8YY-01 15 48443700 48443700 G A MYEF2 Nonsense_Mutation p.Q426* 0.40 TCGA-2W-A8YY-01 15 48495065 48495065 G T CTXN2 3'UTR 0.39 TCGA-2W-A8YY-01 15 48633501 48633501 A C DUT Missense_Mutation p.E191A 0.35 tolerated(0.32) benign(0.413) TCGA-2W-A8YY-01 15 48634134 48634134 C T DUT Intron 0.41 TCGA-2W-A8YY-01 15 48700554 48700554 T C FBN1 3'UTR 0.36 TCGA-2W-A8YY-01 15 48702092 48702092 C T FBN1 3'UTR 0.45 TCGA-2W-A8YY-01 15 48766566 48766566 C T FBN1 Missense_Mutation p.E1366K 0.45 possibly_damaging(0.782) TCGA-2W-A8YY-01 15 48777620 48777620 A G FBN1 Silent p.C1221C 0.27 TCGA-2W-A8YY-01 15 48780352 48780352 C T FBN1 Missense_Mutation p.E1099K 0.41 benign(0.446) TCGA-2W-A8YY-01 15 48780430 48780430 C T FBN1 Missense_Mutation p.E1073K 0.46 probably_damaging(0.95) TCGA-2W-A8YY-01 15 48829826 48829826 G A FBN1 Missense_Mutation p.R240C 0.40 probably_damaging(0.997) TCGA-2W-A8YY-01 15 49117945 49117945 C A SHC4 3'UTR 0.34 TCGA-2W-A8YY-01 15 49254707 49254707 C T SHC4 Missense_Mutation p.G169E 0.44 tolerated(0.44) benign(0.004) TCGA-2W-A8YY-01 15 49281313 49281313 A G SECISBP2L 3'UTR 0.21 TCGA-2W-A8YY-01 15 49308894 49308894 G T SECISBP2L Missense_Mutation p.A475D 0.39 deleterious(0.01) possibly_damaging(0.451) TCGA-2W-A8YY-01 15 49420051 49420051 C T COPS2 3'UTR 0.13 TCGA-2W-A8YY-01 15 49493447 49493447 G A GALK2 Missense_Mutation p.G48R 0.33 deleterious(0.01) probably_damaging(0.948) TCGA-2W-A8YY-01 15 49584701 49584701 C T GALK2 Nonsense_Mutation p.R312* 0.20 TCGA-2W-A8YY-01 15 49620946 49620946 T C GALK2 3'Flank 0.44 TCGA-2W-A8YY-01 15 49882159 49882159 A T FAM227B Missense_Mutation p.S51T 0.34 tolerated(0.58) benign(0.007) TCGA-2W-A8YY-01 15 50152399 50152399 T A ATP8B4 Nonsense_Mutation p.K1191* 0.42 TCGA-2W-A8YY-01 15 50193323 50193323 C T ATP8B4 Missense_Mutation p.G752E 0.29 tolerated(0.1) possibly_damaging(0.585) TCGA-2W-A8YY-01 15 50193361 50193361 C T ATP8B4 Silent p.Q739Q 0.24 TCGA-2W-A8YY-01 15 50209220 50209220 G A ATP8B4 Silent p.I684I 0.35 TCGA-2W-A8YY-01 15 50273411 50273411 C T ATP8B4 Missense_Mutation p.V277I 0.25 tolerated(0.2) probably_damaging(0.997) TCGA-2W-A8YY-01 15 50494752 50494752 G A SLC27A2 Missense_Mutation p.G253R 0.40 deleterious(0.04) benign(0.365) TCGA-2W-A8YY-01 15 50534366 50534366 T C HDC 3'UTR 0.48 TCGA-2W-A8YY-01 15 50763856 50763856 A G USP8 Missense_Mutation p.H238R 0.31 tolerated(0.36) benign(0) TCGA-2W-A8YY-01 15 50763898 50763898 A G USP8 Missense_Mutation p.N252S 0.31 tolerated(0.63) benign(0) TCGA-2W-A8YY-01 15 50785014 50785014 A C USP8 Missense_Mutation p.N784T 0.46 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 15 50786277 50786277 T C USP8 Silent p.L820L 0.30 TCGA-2W-A8YY-01 15 50853045 50853045 A G TRPM7 3'UTR 0.34 TCGA-2W-A8YY-01 15 50873077 50873077 C A TRPM7 Missense_Mutation p.R1529I 0.35 tolerated(0.19) benign(0.015) TCGA-2W-A8YY-01 15 50881788 50881788 C T TRPM7 Splice_Site p.X1463_splice 0.29 TCGA-2W-A8YY-01 15 50999832 50999832 C T SPPL2A 3'UTR 0.40 TCGA-2W-A8YY-01 15 51039782 51039782 C T SPPL2A Nonsense_Mutation p.W165* 0.08 TCGA-2W-A8YY-01 15 51242322 51242322 G A AP4E1 Missense_Mutation p.E502K 0.12 tolerated(0.15) benign(0.259) TCGA-2W-A8YY-01 15 51260522 51260522 G A AP4E1 Silent p.A638A 0.10 TCGA-2W-A8YY-01 15 51289532 51289532 G A AP4E1 Missense_Mutation p.A786T 0.43 tolerated(0.28) benign(0.003) TCGA-2W-A8YY-01 15 51297052 51297052 T A AP4E1 3'UTR 0.33 TCGA-2W-A8YY-01 15 51350215 51350215 G A TNFAIP8L3 Missense_Mutation p.R248C 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 51748318 51748318 C T DMXL2 Missense_Mutation p.R2803H 0.26 deleterious(0) probably_damaging(0.939) TCGA-2W-A8YY-01 15 51757072 51757072 C A DMXL2 Missense_Mutation p.E2536D 0.33 tolerated(0.47) benign(0.007) TCGA-2W-A8YY-01 15 51773769 51773769 C T DMXL2 Missense_Mutation p.R1845Q 0.55 deleterious(0) possibly_damaging(0.821) TCGA-2W-A8YY-01 15 51783796 51783796 C T DMXL2 Silent p.T1644T 0.32 TCGA-2W-A8YY-01 15 51830464 51830464 C T DMXL2 Missense_Mutation p.E431K 0.49 tolerated(0.32) benign(0.1) TCGA-2W-A8YY-01 15 51975316 51975316 C T SCG3 Missense_Mutation p.P59L 0.29 tolerated_low_confidence(0.08) benign(0.002) TCGA-2W-A8YY-01 15 52101373 52101373 C T TMOD2 3'UTR 0.41 TCGA-2W-A8YY-01 15 52254608 52254608 A G LEO1 Silent p.D299D 0.39 TCGA-2W-A8YY-01 15 52416828 52416828 G A GNB5 Silent p.L340L 0.52 TCGA-2W-A8YY-01 15 52427860 52427860 G T GNB5 Missense_Mutation p.L241I 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 15 52476769 52476769 G T GNB5 Nonsense_Mutation p.Y35* 0.13 TCGA-2W-A8YY-01 15 52497275 52497275 C T MYO5C Missense_Mutation p.R1536H 0.31 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 52498085 52498085 G T MYO5C Missense_Mutation p.L1489I 0.14 deleterious(0.05) benign(0.117) TCGA-2W-A8YY-01 15 52534405 52534405 G T MYO5C Missense_Mutation p.A799D 0.35 tolerated(0.21) possibly_damaging(0.501) TCGA-2W-A8YY-01 15 52620201 52620201 G T MYO5A Missense_Mutation p.L1495M 0.37 tolerated(0.1) probably_damaging(0.911) TCGA-2W-A8YY-01 15 52874458 52874458 G A FAM214A Missense_Mutation p.R1042W 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 52901411 52901411 G A FAM214A Missense_Mutation p.S567F 0.24 deleterious(0.01) benign(0.031) TCGA-2W-A8YY-01 15 52903441 52903441 C T FAM214A Missense_Mutation p.R139Q 0.48 deleterious(0.01) probably_damaging(0.994) TCGA-2W-A8YY-01 15 53081709 53081709 G A ONECUT1 Missense_Mutation p.H125Y 0.38 tolerated(0.68) possibly_damaging(0.806) TCGA-2W-A8YY-01 15 53809840 53809840 G A WDR72 3'UTR 0.28 TCGA-2W-A8YY-01 15 53997209 53997209 G T WDR72 Missense_Mutation p.L442M 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 54860129 54860129 T C UNC13C Silent p.D2030D 0.10 TCGA-2W-A8YY-01 15 55497772 55497772 C T RAB27A Missense_Mutation p.R200Q 0.31 tolerated(0.64) benign(0.006) TCGA-2W-A8YY-01 15 55967735 55967735 G A PRTG Nonsense_Mutation p.Q510* 0.24 TCGA-2W-A8YY-01 15 56155188 56155188 C T NEDD4 Silent p.E546E 0.48 TCGA-2W-A8YY-01 15 56385263 56385263 G A RFX7 3'UTR 0.33 TCGA-2W-A8YY-01 15 56388001 56388001 C T RFX7 Missense_Mutation p.G642D 0.33 deleterious_low_confidence(0) benign(0.081) TCGA-2W-A8YY-01 15 56686962 56686962 A G TEX9 Missense_Mutation p.Y253C 0.50 deleterious(0) possibly_damaging(0.896) TCGA-2W-A8YY-01 15 56719918 56719918 A G TEX9 Missense_Mutation p.D360G 0.36 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 15 56735953 56735953 C A MNS1 Missense_Mutation p.E262D 0.33 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 15 56748710 56748710 T C MNS1 Missense_Mutation p.N79D 0.44 tolerated(0.5) benign(0.411) TCGA-2W-A8YY-01 15 56970878 56970878 C T ZNF280D Silent p.T382T 0.41 TCGA-2W-A8YY-01 15 57545637 57545637 C T TCF12 Missense_Mutation p.L480F 0.39 tolerated(0.06) probably_damaging(1) TCGA-2W-A8YY-01 15 57745947 57745947 C T CGNL1 Silent p.L707L 0.48 TCGA-2W-A8YY-01 15 57999155 57999155 T C POLR2M Splice_Site p.X38_splice 0.42 TCGA-2W-A8YY-01 15 58004256 58004256 G A POLR2M Missense_Mutation p.R278Q 0.43 deleterious(0.04) benign(0.22) TCGA-2W-A8YY-01 15 58257949 58257949 G A ALDH1A2 Missense_Mutation p.P292L 0.41 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 15 58855909 58855909 G T LIPC Nonsense_Mutation p.E459* 0.39 TCGA-2W-A8YY-01 15 58936173 58936173 G A ADAM10 Missense_Mutation p.S247F 0.40 deleterious(0) possibly_damaging(0.474) TCGA-2W-A8YY-01 15 59080118 59080118 C T FAM63B Missense_Mutation p.P285L 0.40 deleterious(0.02) probably_damaging(0.984) TCGA-2W-A8YY-01 15 59148411 59148411 A C FAM63B 3'UTR 0.43 TCGA-2W-A8YY-01 15 59179437 59179437 T C SLTM Missense_Mutation p.K893R 0.44 tolerated(0.15) possibly_damaging(0.791) TCGA-2W-A8YY-01 15 59186309 59186310 - T SLTM Frame_Shift_Ins p.N487Kfs*4 0.40 TCGA-2W-A8YY-01 15 59225655 59225655 C T SLTM Missense_Mutation p.R37Q 0.26 deleterious(0) unknown(0) TCGA-2W-A8YY-01 15 59384781 59384781 G A RNF111 Missense_Mutation p.D938N 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-2W-A8YY-01 15 59387056 59387056 T C RNF111 Missense_Mutation p.I982T 0.34 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 15 59428686 59428687 - A MYO1E 3'UTR 0.34 TCGA-2W-A8YY-01 15 59466038 59466038 C T MYO1E Silent p.G747G 0.45 TCGA-2W-A8YY-01 15 59480369 59480369 C A MYO1E Missense_Mutation p.V618L 0.47 deleterious(0) benign(0.445) TCGA-2W-A8YY-01 15 59500332 59500332 A G LDHAL6B 3'UTR 0.24 TCGA-2W-A8YY-01 15 59516910 59516910 C T MYO1E Missense_Mutation p.R252K 0.13 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 15 59815051 59815051 C T FAM81A 3'UTR 0.36 TCGA-2W-A8YY-01 15 60745750 60745750 A - NARG2 Intron 0.22 TCGA-2W-A8YY-01 15 62202413 62202413 C T VPS13C Missense_Mutation p.R2936Q 0.40 tolerated(0.31) benign(0.023) TCGA-2W-A8YY-01 15 62204184 62204184 A G VPS13C Missense_Mutation p.M2857T 0.41 tolerated(0.12) possibly_damaging(0.889) TCGA-2W-A8YY-01 15 62209577 62209577 C T VPS13C Missense_Mutation p.R2673Q 0.59 deleterious(0.03) benign(0.087) TCGA-2W-A8YY-01 15 62219413 62219413 C T VPS13C Silent p.S2131S 0.53 TCGA-2W-A8YY-01 15 62256052 62256052 C T VPS13C Missense_Mutation p.A1105T 0.40 tolerated(0.11) probably_damaging(0.988) TCGA-2W-A8YY-01 15 62266517 62266517 C A VPS13C Missense_Mutation p.Q836H 0.32 tolerated(0.06) possibly_damaging(0.823) TCGA-2W-A8YY-01 15 62361294 62361294 C A C2CD4A 3'UTR 0.38 TCGA-2W-A8YY-01 15 62361638 62361638 C T C2CD4A 3'UTR 0.44 TCGA-2W-A8YY-01 15 62539284 62539284 G A AC126323.1 5'Flank 0.39 TCGA-2W-A8YY-01 15 62939540 62939540 C T TLN2 Missense_Mutation p.R11C 0.33 tolerated(0.05) possibly_damaging(0.608) TCGA-2W-A8YY-01 15 63000854 63000854 G A TLN2 Missense_Mutation p.V776M 0.52 tolerated(0.1) benign(0.132) TCGA-2W-A8YY-01 15 63132819 63132819 C T TLN2 3'UTR 0.39 TCGA-2W-A8YY-01 15 63338945 63338945 C T TPM1 Intron 0.52 TCGA-2W-A8YY-01 15 63363548 63363548 C T TPM1 3'UTR 0.39 TCGA-2W-A8YY-01 15 63481756 63481756 C T RAB8B 5'UTR 0.45 TCGA-2W-A8YY-01 15 63556087 63556087 C T RAB8B 3'UTR 0.54 TCGA-2W-A8YY-01 15 63558883 63558883 T C RAB8B 3'UTR 0.43 TCGA-2W-A8YY-01 15 63618305 63618305 C T CA12 3'UTR 0.27 TCGA-2W-A8YY-01 15 63618382 63618382 G A CA12 3'UTR 0.47 TCGA-2W-A8YY-01 15 63880591 63880592 - A USP3 Frame_Shift_Ins p.F398Vfs*26 0.24 TCGA-2W-A8YY-01 15 63882888 63882888 G A USP3 Missense_Mutation p.A476T 0.31 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 15 63889898 63889898 C T FBXL22 Missense_Mutation p.R103W 0.46 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-2W-A8YY-01 15 63932382 63932382 G T HERC1 Missense_Mutation p.P3957H 0.51 probably_damaging(0.999) TCGA-2W-A8YY-01 15 63955326 63955326 C A HERC1 Missense_Mutation p.A2920S 0.44 benign(0.257) TCGA-2W-A8YY-01 15 63978726 63978726 G A HERC1 Silent p.G2019G 0.30 TCGA-2W-A8YY-01 15 63986977 63986977 G A HERC1 Silent p.H1746H 0.47 TCGA-2W-A8YY-01 15 63987044 63987044 G T HERC1 Missense_Mutation p.A1724D 0.30 benign(0.132) TCGA-2W-A8YY-01 15 64005742 64005742 G A HERC1 Nonsense_Mutation p.R1425* 0.42 TCGA-2W-A8YY-01 15 64021717 64021717 G A HERC1 Silent p.C1000C 0.33 TCGA-2W-A8YY-01 15 64067490 64067490 C T HERC1 Silent p.Q111Q 0.40 TCGA-2W-A8YY-01 15 64218180 64218180 C T DAPK2 Missense_Mutation p.A258T 0.54 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 15 64410320 64410320 C T SNX1 Silent p.A92A 0.26 TCGA-2W-A8YY-01 15 64426941 64426941 G A SNX1 Missense_Mutation p.E434K 0.26 tolerated(0.6) probably_damaging(0.991) TCGA-2W-A8YY-01 15 64429928 64429928 C T SNX1 Intron 0.32 TCGA-2W-A8YY-01 15 64448777 64448777 G T SNX22 3'UTR 0.36 TCGA-2W-A8YY-01 15 64459673 64459673 G A CSNK1G1 3'UTR 0.42 TCGA-2W-A8YY-01 15 64496735 64496735 G A CSNK1G1 Missense_Mutation p.P302S 0.34 deleterious(0.03) benign(0.163) TCGA-2W-A8YY-01 15 64687622 64687622 C T TRIP4 Silent p.G99G 0.34 TCGA-2W-A8YY-01 15 64966213 64966213 C T ZNF609 Missense_Mutation p.A387V 0.47 deleterious(0.04) benign(0.1) TCGA-2W-A8YY-01 15 65108398 65108398 C T PIF1 3'UTR 0.35 TCGA-2W-A8YY-01 15 65298504 65298504 G A MTFMT Missense_Mutation p.A280V 0.47 deleterious(0.05) benign(0.017) TCGA-2W-A8YY-01 15 65489783 65489783 C T CILP Silent p.K947K 0.35 TCGA-2W-A8YY-01 15 65772592 65772592 T C DPP8 Missense_Mutation p.I438V 0.31 tolerated(0.36) probably_damaging(0.986) TCGA-2W-A8YY-01 15 65793117 65793117 C A DPP8 Missense_Mutation p.A141S 0.35 tolerated(0.34) benign(0.16) TCGA-2W-A8YY-01 15 65930471 65930471 C T SLC24A1 Silent p.G632G 0.54 TCGA-2W-A8YY-01 15 65983601 65983601 G A DENND4A Missense_Mutation p.L1110F 0.09 deleterious(0.03) probably_damaging(0.976) TCGA-2W-A8YY-01 15 65993496 65993496 C T DENND4A Missense_Mutation p.R865H 0.26 deleterious(0.03) benign(0.099) TCGA-2W-A8YY-01 15 65994218 65994218 C T DENND4A Missense_Mutation p.R814H 0.64 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 15 66180163 66180163 C T RAB11A Silent p.C212C 0.48 TCGA-2W-A8YY-01 15 66191207 66191207 C T MEGF11 Missense_Mutation p.A945T 0.33 tolerated(0.06) benign(0.385) TCGA-2W-A8YY-01 15 66206094 66206094 G A MEGF11 Silent p.S897S 0.56 TCGA-2W-A8YY-01 15 66621739 66621739 T C DIS3L Splice_Site p.X845_splice 0.39 TCGA-2W-A8YY-01 15 66793791 66793791 G A RPL4 Missense_Mutation p.R200C 0.42 deleterious(0.01) benign(0.292) TCGA-2W-A8YY-01 15 66793794 66793794 G A RPL4 Missense_Mutation p.R199C 0.42 deleterious(0.04) benign(0.381) TCGA-2W-A8YY-01 15 66795421 66795421 C T RPL4 Missense_Mutation p.R86H 0.46 deleterious(0.03) benign(0.295) TCGA-2W-A8YY-01 15 66795429 66795429 C T RPL4 Silent p.G83G 0.44 TCGA-2W-A8YY-01 15 66821885 66821885 C T ZWILCH Silent p.L377L 0.17 TCGA-2W-A8YY-01 15 66844422 66844422 C A LCTL Missense_Mutation p.R428I 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 66857685 66857685 C T LCTL Missense_Mutation p.A7T 0.36 tolerated_low_confidence(0.14) benign(0.001) TCGA-2W-A8YY-01 15 67457692 67457692 G A SMAD3 Missense_Mutation p.A168T 0.46 tolerated(0.47) benign(0.002) TCGA-2W-A8YY-01 15 67473648 67473648 G A SMAD3 Missense_Mutation p.R243H 0.47 deleterious(0) possibly_damaging(0.481) TCGA-2W-A8YY-01 15 67473791 67473791 G A SMAD3 Missense_Mutation p.G291R 0.41 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 15 67885288 67885289 - A MAP2K5 Frame_Shift_Ins p.I155Nfs*9 0.33 TCGA-2W-A8YY-01 15 68118704 68118704 G A SKOR1 Missense_Mutation p.A366T 0.47 deleterious_low_confidence(0) benign(0.245) TCGA-2W-A8YY-01 15 68118940 68118940 C T SKOR1 Silent p.D444D 0.10 TCGA-2W-A8YY-01 15 68457113 68457113 A C PIAS1 Missense_Mutation p.T327P 0.51 deleterious(0) probably_damaging(0.972) TCGA-2W-A8YY-01 15 68480286 68480286 T - PIAS1 3'UTR 0.33 TCGA-2W-A8YY-01 15 68582399 68582399 G A FEM1B Missense_Mutation p.V235I 0.22 deleterious(0.01) possibly_damaging(0.772) TCGA-2W-A8YY-01 15 68603670 68603670 G A ITGA11 Silent p.S1015S 0.41 TCGA-2W-A8YY-01 15 68612563 68612563 G A ITGA11 Missense_Mutation p.S859L 0.30 tolerated(0.09) possibly_damaging(0.871) TCGA-2W-A8YY-01 15 68624298 68624298 A C ITGA11 Missense_Mutation p.Y557D 0.43 deleterious(0) possibly_damaging(0.653) TCGA-2W-A8YY-01 15 68937508 68937508 C T CORO2B Missense_Mutation p.R9C 0.16 tolerated(0.06) benign(0.009) TCGA-2W-A8YY-01 15 68937661 68937661 G A CORO2B Missense_Mutation p.A60T 0.36 deleterious(0.05) possibly_damaging(0.615) TCGA-2W-A8YY-01 15 69003091 69003091 C T CORO2B Silent p.P118P 0.12 TCGA-2W-A8YY-01 15 69238007 69238007 G A SPESP1 Missense_Mutation p.R45Q 0.41 deleterious(0.05) benign(0.001) TCGA-2W-A8YY-01 15 69238209 69238210 - A SPESP1 Frame_Shift_Ins p.H115Tfs*27 0.35 TCGA-2W-A8YY-01 15 69324054 69324054 C T NOX5 Silent p.F174F 0.51 TCGA-2W-A8YY-01 15 69339796 69339796 T C NOX5 Missense_Mutation p.F579S 0.41 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 15 69562263 69562263 A C GLCE 3'UTR 0.44 TCGA-2W-A8YY-01 15 69563470 69563470 C T GLCE 3'UTR 0.14 TCGA-2W-A8YY-01 15 69714744 69714744 C T KIF23 Missense_Mutation p.A178V 0.48 tolerated(0.48) benign(0.008) TCGA-2W-A8YY-01 15 69727847 69727847 G A KIF23 Silent p.T366T 0.33 TCGA-2W-A8YY-01 15 69737222 69737222 G A KIF23 Missense_Mutation p.A825T 0.31 tolerated(0.33) benign(0.02) TCGA-2W-A8YY-01 15 70346978 70346978 C T TLE3 Missense_Mutation p.R545H 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 15 70349819 70349819 C T TLE3 Silent p.S413S 0.37 TCGA-2W-A8YY-01 15 70350574 70350574 G A TLE3 Silent p.D325D 0.43 TCGA-2W-A8YY-01 15 70351035 70351035 G A TLE3 Silent p.S295S 0.47 TCGA-2W-A8YY-01 15 70959332 70959332 C T UACA Missense_Mutation p.A1231T 0.50 tolerated(0.46) benign(0.011) TCGA-2W-A8YY-01 15 70960427 70960427 C T UACA Missense_Mutation p.E866K 0.09 deleterious(0.02) possibly_damaging(0.614) TCGA-2W-A8YY-01 15 71125176 71125176 G A LARP6 Missense_Mutation p.R231W 0.42 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 15 71184500 71184500 G A THAP10 Missense_Mutation p.R38W 0.12 deleterious(0) possibly_damaging(0.664) TCGA-2W-A8YY-01 15 71300936 71300936 T C LRRC49 Missense_Mutation p.I468T 0.17 tolerated(0.37) benign(0.001) TCGA-2W-A8YY-01 15 71479857 71479857 T C THSD4 Intron 0.35 TCGA-2W-A8YY-01 15 72020955 72020955 C T THSD4 Silent p.Y475Y 0.21 TCGA-2W-A8YY-01 15 72039252 72039252 C T THSD4 Silent p.R704R 0.23 TCGA-2W-A8YY-01 15 72185474 72185474 C T MYO9A Intron 0.13 TCGA-2W-A8YY-01 15 72260396 72260396 C T MYO9A Missense_Mutation p.E639K 0.25 tolerated(0.4) benign(0.23) TCGA-2W-A8YY-01 15 72260450 72260450 T C MYO9A Missense_Mutation p.N621D 0.17 tolerated(0.29) benign(0.267) TCGA-2W-A8YY-01 15 72455658 72455658 G T GRAMD2 Missense_Mutation p.T302N 0.50 tolerated(0.55) benign(0.001) TCGA-2W-A8YY-01 15 72462212 72462212 C A GRAMD2 Missense_Mutation p.R37I 0.26 deleterious(0.01) benign(0.042) TCGA-2W-A8YY-01 15 72492049 72492049 G A PKM Missense_Mutation p.T513I 0.39 deleterious(0.03) benign(0.386) TCGA-2W-A8YY-01 15 72499193 72499193 C T PKM Missense_Mutation p.R339H 0.42 deleterious(0.04) benign(0.309) TCGA-2W-A8YY-01 15 72577640 72577640 T A CELF6 3'UTR 0.25 TCGA-2W-A8YY-01 15 72578511 72578511 G A CELF6 3'UTR 0.33 TCGA-2W-A8YY-01 15 72578642 72578642 G A CELF6 3'UTR 0.41 TCGA-2W-A8YY-01 15 72691081 72691081 C T TMEM202 Nonsense_Mutation p.R57* 0.38 TCGA-2W-A8YY-01 15 72874471 72874471 G A ARIH1 Missense_Mutation p.R511Q 0.30 tolerated(0.18) possibly_damaging(0.652) TCGA-2W-A8YY-01 15 73002098 73002098 G A BBS4 Missense_Mutation p.R45Q 0.48 deleterious(0.04) benign(0.03) TCGA-2W-A8YY-01 15 73028165 73028165 G T BBS4 Splice_Site p.X369_splice 0.26 TCGA-2W-A8YY-01 15 73595576 73595576 T - NEO1 3'UTR 0.27 TCGA-2W-A8YY-01 15 73615011 73615011 G T HCN4 Silent p.P1141P 0.31 TCGA-2W-A8YY-01 15 73624593 73624593 C T HCN4 Missense_Mutation p.R417H 0.31 deleterious(0) unknown(0) TCGA-2W-A8YY-01 15 73832902 73832902 C T C15orf60 Missense_Mutation p.T109M 0.33 deleterious(0.02) possibly_damaging(0.808) TCGA-2W-A8YY-01 15 73853274 73853274 G T NPTN 3'UTR 0.33 TCGA-2W-A8YY-01 15 73879898 73879898 C T NPTN Missense_Mutation p.A225T 0.36 tolerated(0.42) benign(0.009) TCGA-2W-A8YY-01 15 74006133 74006133 C T CD276 3'UTR 0.37 TCGA-2W-A8YY-01 15 74006526 74006526 G A CD276 3'UTR 0.37 TCGA-2W-A8YY-01 15 74032532 74032532 T C C15orf59 Missense_Mutation p.E203G 0.12 tolerated(0.26) possibly_damaging(0.892) TCGA-2W-A8YY-01 15 74032915 74032915 C T C15orf59 Silent p.T75T 0.37 TCGA-2W-A8YY-01 15 74177399 74177399 C T TBC1D21 Silent p.H178H 0.26 TCGA-2W-A8YY-01 15 74277036 74277036 C T STOML1 Missense_Mutation p.G323S 0.49 tolerated(0.06) benign(0.358) TCGA-2W-A8YY-01 15 74326811 74326811 C T PML Intron 0.45 TCGA-2W-A8YY-01 15 74327536 74327536 C T PML Intron 0.47 TCGA-2W-A8YY-01 15 74327744 74327744 C T PML Intron 0.42 TCGA-2W-A8YY-01 15 74327842 74327842 G A PML Intron 0.48 TCGA-2W-A8YY-01 15 74336921 74336921 C T PML Missense_Mutation p.R741C 0.12 deleterious(0.03) possibly_damaging(0.487) TCGA-2W-A8YY-01 15 74337106 74337106 C T PML Silent p.N802N 0.35 TCGA-2W-A8YY-01 15 74472461 74472461 C T STRA6 Missense_Mutation p.R694H 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 15 74702923 74702923 C A SEMA7A 3'UTR 0.38 TCGA-2W-A8YY-01 15 74709956 74709956 C T SEMA7A Missense_Mutation p.E176K 0.45 tolerated(0.3) benign(0.158) TCGA-2W-A8YY-01 15 74741677 74741677 G T UBL7 Silent p.P244P 0.40 TCGA-2W-A8YY-01 15 74744685 74744685 G T UBL7 Missense_Mutation p.F113L 0.09 tolerated(0.51) benign(0.066) TCGA-2W-A8YY-01 15 74919743 74919743 C A CLK3 Missense_Mutation p.L438M 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 74924019 74924019 C T EDC3 3'UTR 0.46 TCGA-2W-A8YY-01 15 74927900 74927900 C - EDC3 Frame_Shift_Del p.A348Lfs*10 0.29 TCGA-2W-A8YY-01 15 75012966 75012966 A G CYP1A1 Missense_Mutation p.F468S 0.41 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 15 75091055 75091055 G C CSK Missense_Mutation p.V39L 0.46 tolerated(0.52) benign(0.004) TCGA-2W-A8YY-01 15 75118043 75118043 G A LMAN1L 3'UTR 0.38 TCGA-2W-A8YY-01 15 75118053 75118053 G A LMAN1L 3'UTR 0.31 TCGA-2W-A8YY-01 15 75190200 75190200 G - MPI 3'UTR 0.24 TCGA-2W-A8YY-01 15 75198755 75198755 G A FAM219B Intron 0.33 TCGA-2W-A8YY-01 15 75310760 75310760 G A SCAMP5 Missense_Mutation p.G133S 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 75310841 75310841 G A SCAMP5 Missense_Mutation p.V160M 0.11 tolerated(0.27) benign(0.113) TCGA-2W-A8YY-01 15 75311889 75311889 G A SCAMP5 3'UTR 0.28 TCGA-2W-A8YY-01 15 75312016 75312016 T C SCAMP5 3'UTR 0.27 TCGA-2W-A8YY-01 15 75499531 75499531 C T C15orf39 Missense_Mutation p.A381V 0.26 deleterious(0.05) possibly_damaging(0.682) TCGA-2W-A8YY-01 15 75500464 75500464 G A C15orf39 Missense_Mutation p.R692Q 0.33 tolerated(1) unknown(0) TCGA-2W-A8YY-01 15 75556423 75556423 G T GOLGA6C Missense_Mutation p.R188M 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-2W-A8YY-01 15 75586790 75586790 C A GOLGA6D Missense_Mutation p.L686M 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 75651977 75651977 G A MAN2C1 Silent p.G644G 0.50 TCGA-2W-A8YY-01 15 75663253 75663253 A C SIN3A 3'UTR 0.40 TCGA-2W-A8YY-01 15 75693199 75693199 G A SIN3A Nonsense_Mutation p.R537* 0.47 TCGA-2W-A8YY-01 15 75702244 75702244 G A SIN3A Missense_Mutation p.P417L 0.43 tolerated(0.09) benign(0.007) TCGA-2W-A8YY-01 15 75761265 75761265 C T PTPN9 Missense_Mutation p.V543M 0.40 deleterious(0) probably_damaging(0.934) TCGA-2W-A8YY-01 15 75931527 75931527 C G IMP3 3'UTR 0.10 TCGA-2W-A8YY-01 15 75941448 75941448 C T SNX33 Missense_Mutation p.A2V 0.13 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 15 75974705 75974705 G - CSPG4 Frame_Shift_Del p.Q1627Sfs*2 0.10 TCGA-2W-A8YY-01 15 75979817 75979817 C T CSPG4 Missense_Mutation p.V1197I 0.28 tolerated(1) benign(0.013) TCGA-2W-A8YY-01 15 75979930 75979930 C T CSPG4 Missense_Mutation p.R1159H 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 75981284 75981284 G A CSPG4 Nonsense_Mutation p.Q708* 0.49 TCGA-2W-A8YY-01 15 75981486 75981486 G A CSPG4 Silent p.F640F 0.34 TCGA-2W-A8YY-01 15 76031534 76031534 G T AC019294.1 3'UTR 0.17 TCGA-2W-A8YY-01 15 76171500 76171500 G A UBE2Q2 Missense_Mutation p.E266K 0.38 deleterious(0) possibly_damaging(0.631) TCGA-2W-A8YY-01 15 76206511 76206511 G C FBXO22 Missense_Mutation p.C143S 0.44 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 15 76632717 76632717 C G ISL2 Missense_Mutation p.H204Q 0.29 tolerated(0.09) possibly_damaging(0.781) TCGA-2W-A8YY-01 15 77150151 77150151 T C SCAPER Missense_Mutation p.Q65R 0.31 tolerated(0.44) benign(0.287) TCGA-2W-A8YY-01 15 77338949 77338949 A G TSPAN3 3'UTR 0.50 TCGA-2W-A8YY-01 15 77348565 77348565 G A TSPAN3 Silent p.A32A 0.38 TCGA-2W-A8YY-01 15 77471218 77471218 C A PEAK1 Missense_Mutation p.K1017N 0.35 tolerated(0.1) benign(0.001) TCGA-2W-A8YY-01 15 77473476 77473476 G A PEAK1 Missense_Mutation p.R265C 0.25 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 78212603 78212603 T C RP11-114H24.7 Intron 0.39 TCGA-2W-A8YY-01 15 78288075 78288075 C T TBC1D2B 3'UTR 0.28 TCGA-2W-A8YY-01 15 78294014 78294014 C T TBC1D2B Silent p.S881S 0.35 TCGA-2W-A8YY-01 15 78403609 78403609 C T CIB2 Silent p.S32S 0.27 TCGA-2W-A8YY-01 15 78466040 78466040 C T ACSBG1 Missense_Mutation p.E662K 0.25 deleterious(0.02) benign(0.194) TCGA-2W-A8YY-01 15 78474942 78474942 C T ACSBG1 Missense_Mutation p.E254K 0.38 tolerated(0.2) benign(0.103) TCGA-2W-A8YY-01 15 78575732 78575732 C T WDR61 3'UTR 0.25 TCGA-2W-A8YY-01 15 78578381 78578381 A G WDR61 Splice_Site p.X250_splice 0.65 TCGA-2W-A8YY-01 15 78588056 78588056 G A WDR61 5'UTR 0.22 TCGA-2W-A8YY-01 15 78633483 78633483 A G CRABP1 Missense_Mutation p.T57A 0.28 deleterious(0.01) possibly_damaging(0.787) TCGA-2W-A8YY-01 15 78841246 78841246 G A PSMA4 Missense_Mutation p.R249H 0.16 tolerated(0.1) unknown(0) TCGA-2W-A8YY-01 15 78893800 78893800 T C CHRNA3 Missense_Mutation p.Y395C 0.33 tolerated(0.19) benign(0.004) TCGA-2W-A8YY-01 15 78894282 78894282 C T CHRNA3 Silent p.S234S 0.29 TCGA-2W-A8YY-01 15 78921549 78921549 G A CHRNB4 Silent p.C366C 0.09 TCGA-2W-A8YY-01 15 78922286 78922286 C T CHRNB4 Missense_Mutation p.A121T 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 79060558 79060558 C T ADAMTS7 Silent p.G854G 0.36 TCGA-2W-A8YY-01 15 79066580 79066580 C T ADAMTS7 Missense_Mutation p.A647T 0.40 deleterious(0.02) benign(0.171) TCGA-2W-A8YY-01 15 79069829 79069829 C T ADAMTS7 Missense_Mutation p.R475H 0.11 deleterious(0.02) possibly_damaging(0.534) TCGA-2W-A8YY-01 15 79178501 79178501 G A MORF4L1 Silent p.P97P 0.35 TCGA-2W-A8YY-01 15 79189775 79189775 G A MORF4L1 3'UTR 0.36 TCGA-2W-A8YY-01 15 79189985 79189985 G A MORF4L1 3'UTR 0.39 TCGA-2W-A8YY-01 15 79227364 79227364 C T CTSH Missense_Mutation p.D121N 0.16 tolerated(0.05) probably_damaging(0.988) TCGA-2W-A8YY-01 15 79298607 79298607 G A RASGRF1 Missense_Mutation p.R679C 0.48 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 15 79590061 79590061 G A ANKRD34C 3'UTR 0.14 TCGA-2W-A8YY-01 15 79590506 79590506 G T ANKRD34C 3'UTR 0.27 TCGA-2W-A8YY-01 15 79749865 79749865 G T KIAA1024 Missense_Mutation p.S459I 0.45 deleterious(0.01) benign(0.333) TCGA-2W-A8YY-01 15 79760658 79760658 C T KIAA1024 Silent p.L895L 0.44 TCGA-2W-A8YY-01 15 79762202 79762202 T C KIAA1024 3'UTR 0.23 TCGA-2W-A8YY-01 15 79763778 79763778 G A KIAA1024 3'UTR 0.38 TCGA-2W-A8YY-01 15 80216667 80216667 C A C15ORF37 3'UTR 0.10 TCGA-2W-A8YY-01 15 80478528 80478528 C A FAH Missense_Mutation p.L413M 0.42 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 15 80883944 80883944 C T ARNT2 Missense_Mutation p.R652W 0.25 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-2W-A8YY-01 15 80890202 80890202 T C ARNT2 3'UTR 0.30 TCGA-2W-A8YY-01 15 81046578 81046578 C T ABHD17C Missense_Mutation p.A286V 0.35 tolerated(0.14) benign(0.255) TCGA-2W-A8YY-01 15 81046607 81046607 G A ABHD17C Missense_Mutation p.E296K 0.25 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 15 81201583 81201583 G T KIAA1199 Missense_Mutation p.R578M 0.20 deleterious(0.03) possibly_damaging(0.541) TCGA-2W-A8YY-01 15 81274463 81274463 C T MESDC2 Missense_Mutation p.D92N 0.15 deleterious(0.02) probably_damaging(0.984) TCGA-2W-A8YY-01 15 81296260 81296260 T C MESDC1 3'UTR 0.28 TCGA-2W-A8YY-01 15 81571228 81571228 C T IL16 Silent p.F287F 0.40 TCGA-2W-A8YY-01 15 81572070 81572070 G A IL16 Missense_Mutation p.A346T 0.52 tolerated(0.77) benign(0.006) TCGA-2W-A8YY-01 15 81625553 81625553 G A TMC3 Missense_Mutation p.S837L 0.39 tolerated_low_confidence(0.38) benign(0.006) TCGA-2W-A8YY-01 15 82334158 82334158 A - MEX3B 3'UTR 0.26 TCGA-2W-A8YY-01 15 82334451 82334451 T C MEX3B 3'UTR 0.08 TCGA-2W-A8YY-01 15 82335212 82335212 C T MEX3B 3'UTR 0.32 TCGA-2W-A8YY-01 15 82431023 82431023 T C EFTUD1 Silent p.P1050P 0.28 TCGA-2W-A8YY-01 15 83333597 83333597 G A AP3B2 Silent p.S690S 0.44 TCGA-2W-A8YY-01 15 83437649 83437649 T C FSD2 Silent p.E512E 0.31 TCGA-2W-A8YY-01 15 83481945 83481945 G A WHAMM Missense_Mutation p.V234M 0.40 tolerated(0.53) benign(0.021) TCGA-2W-A8YY-01 15 83673667 83673667 G A C15orf40 Intron 0.45 TCGA-2W-A8YY-01 15 83924906 83924907 - T BNC1 3'UTR 0.18 TCGA-2W-A8YY-01 15 83932666 83932666 G A BNC1 Missense_Mutation p.T446M 0.33 tolerated(0.09) benign(0.003) TCGA-2W-A8YY-01 15 83935615 83935615 C A BNC1 Missense_Mutation p.Q136H 0.36 deleterious(0.02) probably_damaging(0.987) TCGA-2W-A8YY-01 15 84286946 84286946 A T SH3GL3 Missense_Mutation p.Q317H 0.49 deleterious(0.03) probably_damaging(0.963) TCGA-2W-A8YY-01 15 84659951 84659951 C T ADAMTSL3 Nonsense_Mutation p.R1320* 0.49 TCGA-2W-A8YY-01 15 84868574 84868574 G A AC136698.1 3'Flank 0.11 TCGA-2W-A8YY-01 15 85113029 85113029 A G UBE2Q2P1 RNA 0.33 TCGA-2W-A8YY-01 15 85149900 85149900 G T ZSCAN2 Intron 0.30 TCGA-2W-A8YY-01 15 85327883 85327883 C T ZNF592 Silent p.D659D 0.35 TCGA-2W-A8YY-01 15 85345706 85345706 C T ZNF592 3'UTR 0.43 TCGA-2W-A8YY-01 15 85348821 85348821 T C ZNF592 3'UTR 0.31 TCGA-2W-A8YY-01 15 85383387 85383387 C T ALPK3 Silent p.L495L 0.38 TCGA-2W-A8YY-01 15 85402485 85402485 A G ALPK3 Missense_Mutation p.I1479V 0.40 tolerated(0.06) probably_damaging(0.997) TCGA-2W-A8YY-01 15 85411755 85411755 G A ALPK3 3'UTR 0.35 TCGA-2W-A8YY-01 15 85681407 85681407 A G PDE8A 3'UTR 0.42 TCGA-2W-A8YY-01 15 86122233 86122233 G T AKAP13 Nonsense_Mutation p.E312* 0.40 TCGA-2W-A8YY-01 15 86122826 86122826 G T AKAP13 Missense_Mutation p.E509D 0.48 deleterious_low_confidence(0.03) benign(0.288) TCGA-2W-A8YY-01 15 86122915 86122915 C T AKAP13 Missense_Mutation p.A539V 0.38 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-2W-A8YY-01 15 86125060 86125060 G A AKAP13 Missense_Mutation p.R1254H 0.33 tolerated_low_confidence(0.16) benign(0.003) TCGA-2W-A8YY-01 15 86189126 86189126 A G AKAP13 Missense_Mutation p.S1439G 0.38 deleterious(0) benign(0.423) TCGA-2W-A8YY-01 15 86259037 86259037 G A AKAP13 Missense_Mutation p.R1877H 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-2W-A8YY-01 15 88521293 88521293 C T NTRK3 Intron 0.50 TCGA-2W-A8YY-01 15 88524477 88524477 A G NTRK3 Intron 0.45 TCGA-2W-A8YY-01 15 88726680 88726680 C T NTRK3 Missense_Mutation p.A122T 0.14 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 15 89020237 89020237 C T MRPS11 Silent p.G143G 0.11 TCGA-2W-A8YY-01 15 89172590 89172590 G A AEN Missense_Mutation p.G225D 0.53 tolerated(0.1) benign(0.358) TCGA-2W-A8YY-01 15 89174211 89174211 T C AEN 3'UTR 0.40 TCGA-2W-A8YY-01 15 89400367 89400367 C T ACAN Silent p.T1517T 0.24 TCGA-2W-A8YY-01 15 89417156 89417156 C A ACAN Silent p.R2473R 0.15 TCGA-2W-A8YY-01 15 89421211 89421211 C T HAPLN3 Missense_Mutation p.R358H 0.24 deleterious(0.04) benign(0.017) TCGA-2W-A8YY-01 15 89421319 89421319 C T HAPLN3 Missense_Mutation p.R322H 0.14 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 15 89738980 89738980 C T ABHD2 3'UTR 0.11 TCGA-2W-A8YY-01 15 89740403 89740403 G A ABHD2 3'UTR 0.36 TCGA-2W-A8YY-01 15 89745059 89745059 C T ABHD2 3'UTR 0.47 TCGA-2W-A8YY-01 15 89790923 89790923 C T FANCI Silent p.D15D 0.35 TCGA-2W-A8YY-01 15 89862559 89862559 C T POLG Missense_Mutation p.E1002K 0.52 tolerated(0.12) probably_damaging(0.984) TCGA-2W-A8YY-01 15 90014860 90014860 C T RHCG 3'UTR 0.36 TCGA-2W-A8YY-01 15 90015951 90015951 A G RHCG 3'UTR 0.13 TCGA-2W-A8YY-01 15 90023500 90023500 G A RHCG Missense_Mutation p.A221V 0.18 deleterious(0) probably_damaging(0.955) TCGA-2W-A8YY-01 15 90196004 90196004 C T KIF7 Missense_Mutation p.R53Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 90245149 90245149 C T WDR93 Nonsense_Mutation p.R58* 0.44 TCGA-2W-A8YY-01 15 90281426 90281426 A G WDR93 Silent p.A640A 0.44 TCGA-2W-A8YY-01 15 90328240 90328240 G A ANPEP 3'UTR 0.31 TCGA-2W-A8YY-01 15 90623425 90623425 C T ZNF710 3'UTR 0.39 TCGA-2W-A8YY-01 15 90623567 90623567 G A ZNF710 3'UTR 0.25 TCGA-2W-A8YY-01 15 90628072 90628072 G A IDH2 Missense_Mutation p.A416V 0.44 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 15 90768957 90768957 A G SEMA4B Missense_Mutation p.Y529C 0.08 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 15 90799378 90799378 G A TTLL13 Missense_Mutation p.G185E 0.43 tolerated(0.06) benign(0.036) TCGA-2W-A8YY-01 15 90807018 90807018 T C TTLL13 3'Flank 0.52 TCGA-2W-A8YY-01 15 90903852 90903852 C T ZNF774 Silent p.Y263Y 0.29 TCGA-2W-A8YY-01 15 90904176 90904176 T C ZNF774 Silent p.G371G 0.40 TCGA-2W-A8YY-01 15 91333904 91333904 G A BLM Missense_Mutation p.G950E 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 91419128 91419128 G A FURIN Missense_Mutation p.G53E 0.36 deleterious(0) possibly_damaging(0.533) TCGA-2W-A8YY-01 15 91422111 91422111 G A FURIN Missense_Mutation p.A320T 0.35 tolerated(1) benign(0.008) TCGA-2W-A8YY-01 15 91424890 91424890 G A FURIN Missense_Mutation p.A723T 0.22 tolerated(0.16) benign(0.002) TCGA-2W-A8YY-01 15 91430429 91430429 A C FES Missense_Mutation p.D166A 0.38 deleterious(0.02) benign(0.22) TCGA-2W-A8YY-01 15 91430452 91430452 C T FES Missense_Mutation p.R174C 0.39 deleterious(0) possibly_damaging(0.684) TCGA-2W-A8YY-01 15 91449165 91449165 G A MAN2A2 Missense_Mutation p.R209Q 0.25 deleterious(0) possibly_damaging(0.717) TCGA-2W-A8YY-01 15 91450114 91450114 G A MAN2A2 Missense_Mutation p.S327N 0.34 tolerated(0.54) benign(0.026) TCGA-2W-A8YY-01 15 91452691 91452691 G A MAN2A2 Missense_Mutation p.R444Q 0.29 tolerated(0.24) benign(0.364) TCGA-2W-A8YY-01 15 91452692 91452692 G A MAN2A2 Silent p.R444R 0.34 TCGA-2W-A8YY-01 15 91453424 91453424 C A MAN2A2 Missense_Mutation p.F493L 0.37 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 91454772 91454772 G A MAN2A2 Missense_Mutation p.V701I 0.48 deleterious(0.02) benign(0.104) TCGA-2W-A8YY-01 15 91475000 91475000 C T HDDC3 Missense_Mutation p.A115T 0.40 deleterious(0.01) possibly_damaging(0.537) TCGA-2W-A8YY-01 15 91490040 91490040 G A UNC45A Missense_Mutation p.G466S 0.26 tolerated(1) benign(0.044) TCGA-2W-A8YY-01 15 91543196 91543196 G A VPS33B Missense_Mutation p.R531W 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 15 92459493 92459493 G A SLCO3A1 Missense_Mutation p.A151T 0.51 tolerated(0.42) benign(0.207) TCGA-2W-A8YY-01 15 93545519 93545519 G T CHD2 Missense_Mutation p.R1417I 0.43 tolerated(0.1) benign(0.031) TCGA-2W-A8YY-01 15 93563245 93563245 G A CHD2 Missense_Mutation p.R1637Q 0.28 tolerated(0.1) benign(0.138) TCGA-2W-A8YY-01 15 93570464 93570464 A G CHD2 3'UTR 0.36 TCGA-2W-A8YY-01 15 93587812 93587812 G A RGMA 3'Flank 0.38 TCGA-2W-A8YY-01 15 93588750 93588750 G A RGMA Silent p.I285I 0.40 TCGA-2W-A8YY-01 15 93609418 93609418 G A RGMA Intron 0.42 TCGA-2W-A8YY-01 15 94858861 94858861 G A MCTP2 Missense_Mutation p.R211H 0.12 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 15 95022241 95022241 G A MCTP2 Missense_Mutation p.R872Q 0.38 deleterious(0.01) possibly_damaging(0.801) TCGA-2W-A8YY-01 15 96869416 96869416 G A NR2F2 5'Flank 0.32 TCGA-2W-A8YY-01 15 98514378 98514378 C T ARRDC4 Silent p.S406S 0.38 TCGA-2W-A8YY-01 15 98982975 98982975 C T FAM169B Missense_Mutation p.R155K 0.15 tolerated(0.09) benign(0.085) TCGA-2W-A8YY-01 15 98995099 98995099 C T FAM169B Missense_Mutation p.A109T 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 15 99442842 99442842 G A IGF1R Silent p.Q413Q 0.41 TCGA-2W-A8YY-01 15 99456414 99456414 C T IGF1R Silent p.Y577Y 0.08 TCGA-2W-A8YY-01 15 99500303 99500303 C T IGF1R Missense_Mutation p.R1246C 0.28 tolerated(0.05) probably_damaging(0.918) TCGA-2W-A8YY-01 15 99501107 99501107 C T IGF1R 3'UTR 0.31 TCGA-2W-A8YY-01 15 99501128 99501128 C T IGF1R 3'UTR 0.33 TCGA-2W-A8YY-01 15 99501355 99501355 A G IGF1R 3'UTR 0.54 TCGA-2W-A8YY-01 15 99502320 99502320 A G IGF1R 3'UTR 0.36 TCGA-2W-A8YY-01 15 99502470 99502470 C T IGF1R 3'UTR 0.43 TCGA-2W-A8YY-01 15 99507721 99507721 A G IGF1R 3'UTR 0.57 TCGA-2W-A8YY-01 15 99512766 99512766 C T PGPEP1L Missense_Mutation p.V87M 0.38 tolerated(0.05) possibly_damaging(0.843) TCGA-2W-A8YY-01 15 99512804 99512804 C T PGPEP1L Missense_Mutation p.R74Q 0.34 tolerated(0.44) benign(0.037) TCGA-2W-A8YY-01 15 99715298 99715298 G A TTC23 Silent p.I274I 0.42 TCGA-2W-A8YY-01 15 99715357 99715357 G A TTC23 Missense_Mutation p.H255Y 0.42 deleterious(0.02) benign(0.069) TCGA-2W-A8YY-01 15 99903329 99903329 C T LRRC28 Missense_Mutation p.P297L 0.21 deleterious(0.01) benign(0.014) TCGA-2W-A8YY-01 16 10567843 10567843 A G ATF7IP2 Missense_Mutation p.T516A 0.40 tolerated(0.09) benign(0.019) TCGA-2W-A8YY-01 16 10641447 10641447 C T EMP2 Missense_Mutation p.A10T 0.49 tolerated(0.08) benign(0.196) TCGA-2W-A8YY-01 16 10855244 10855244 G A NUBP1 Silent p.R210R 0.33 TCGA-2W-A8YY-01 16 10864155 10864155 C T TVP23A Missense_Mutation p.E206K 0.24 tolerated_low_confidence(0.73) benign(0.003) TCGA-2W-A8YY-01 16 11000740 11000740 G A CIITA Missense_Mutation p.G464D 0.36 tolerated(0.31) benign(0.063) TCGA-2W-A8YY-01 16 11001527 11001527 C T CIITA Silent p.G726G 0.46 TCGA-2W-A8YY-01 16 11001528 11001528 G A CIITA Missense_Mutation p.E727K 0.11 deleterious(0) benign(0.069) TCGA-2W-A8YY-01 16 11051652 11051652 G A CLEC16A Missense_Mutation p.V32I 0.33 tolerated(0.32) benign(0.009) TCGA-2W-A8YY-01 16 11051761 11051761 T C CLEC16A Missense_Mutation p.V68A 0.36 deleterious(0) probably_damaging(0.963) TCGA-2W-A8YY-01 16 11056362 11056362 A G CLEC16A Missense_Mutation p.Q87R 0.33 tolerated(0.07) probably_damaging(0.922) TCGA-2W-A8YY-01 16 11096979 11096979 C T CLEC16A Missense_Mutation p.R374W 0.13 deleterious(0) probably_damaging(0.918) TCGA-2W-A8YY-01 16 1115629 1115629 G A SSTR5-AS1 RNA 0.52 TCGA-2W-A8YY-01 16 1115730 1115730 G A SSTR5-AS1 RNA 0.35 TCGA-2W-A8YY-01 16 11272473 11272473 C T CLEC16A Missense_Mutation p.P1030S 0.27 tolerated_low_confidence(0.18) benign(0.031) TCGA-2W-A8YY-01 16 11275743 11275743 T G CLEC16A 3'UTR 0.42 TCGA-2W-A8YY-01 16 11275874 11275874 C T CLEC16A 3'UTR 0.43 TCGA-2W-A8YY-01 16 1129417 1129417 C T SSTR5 Silent p.G183G 0.28 TCGA-2W-A8YY-01 16 11369692 11369692 G A PRM2 3'UTR 0.35 TCGA-2W-A8YY-01 16 114701 114701 G A RHBDF1 Missense_Mutation p.R82C 0.28 deleterious(0) possibly_damaging(0.614) TCGA-2W-A8YY-01 16 11554395 11554395 C T CTD-3088G3.8 Missense_Mutation p.A1180T 0.29 tolerated(1) unknown(0) TCGA-2W-A8YY-01 16 11585563 11585563 T C CTD-3088G3.8 Missense_Mutation p.T540A 0.41 deleterious(0.04) unknown(0) TCGA-2W-A8YY-01 16 11650260 11650260 A G LITAF Intron 0.77 TCGA-2W-A8YY-01 16 11650508 11650508 C T LITAF Missense_Mutation p.V27M 0.45 tolerated(0.34) benign(0.031) TCGA-2W-A8YY-01 16 11769907 11769907 G T SNN 5'UTR 0.11 TCGA-2W-A8YY-01 16 11770317 11770317 G A SNN 3'UTR 0.33 TCGA-2W-A8YY-01 16 11773238 11773238 A G TXNDC11 Missense_Mutation p.L897P 0.28 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 11785820 11785820 G A TXNDC11 Missense_Mutation p.P409L 0.15 tolerated(0.24) benign(0.021) TCGA-2W-A8YY-01 16 11824606 11824606 G A TXNDC11 Silent p.G198G 0.30 TCGA-2W-A8YY-01 16 11855302 11855302 C T ZC3H7A Missense_Mutation p.R760H 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 11941643 11941643 C T RSL1D1 Missense_Mutation p.R89Q 0.20 tolerated(0.06) possibly_damaging(0.611) TCGA-2W-A8YY-01 16 11990599 11990599 C T GSPT1 Silent p.E160E 0.38 TCGA-2W-A8YY-01 16 12059292 12059292 T C TNFRSF17 Silent p.C37C 0.41 TCGA-2W-A8YY-01 16 12142329 12142329 G A SNX29 Silent p.T200T 0.42 TCGA-2W-A8YY-01 16 12145848 12145848 G A SNX29 Missense_Mutation p.R298H 0.34 deleterious_low_confidence(0.03) benign(0.118) TCGA-2W-A8YY-01 16 12146024 12146024 G A SNX29 Missense_Mutation p.V357M 0.49 tolerated_low_confidence(0.16) benign(0.051) TCGA-2W-A8YY-01 16 12146071 12146071 G A SNX29 Silent p.S372S 0.17 TCGA-2W-A8YY-01 16 1250339 1250339 A G CACNA1H Missense_Mutation p.D296G 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-2W-A8YY-01 16 1260936 1260936 C T CACNA1H Silent p.R1396R 0.30 TCGA-2W-A8YY-01 16 1261503 1261503 A G CACNA1H Missense_Mutation p.Y1458C 0.29 deleterious(0.01) probably_damaging(0.954) TCGA-2W-A8YY-01 16 1261772 1261772 C T CACNA1H Silent p.Y1511Y 0.38 TCGA-2W-A8YY-01 16 1265083 1265083 T C CACNA1H Splice_Site p.X1680_splice 0.24 TCGA-2W-A8YY-01 16 1292185 1292185 A G TPSAB1 Missense_Mutation p.T258A 0.32 tolerated(0.59) probably_damaging(0.941) TCGA-2W-A8YY-01 16 13002548 13002548 C T SHISA9 Intron 0.37 TCGA-2W-A8YY-01 16 13002615 13002615 C T SHISA9 Intron 0.27 TCGA-2W-A8YY-01 16 13329164 13329164 G A SHISA9 Silent p.T391T 0.35 TCGA-2W-A8YY-01 16 1394313 1394313 C A BAIAP3 Missense_Mutation p.L568M 0.41 tolerated(0.05) possibly_damaging(0.685) TCGA-2W-A8YY-01 16 1398001 1398001 C T BAIAP3 Silent p.Y1079Y 0.36 TCGA-2W-A8YY-01 16 1398426 1398426 G A BAIAP3 Silent p.A1169A 0.28 TCGA-2W-A8YY-01 16 139864 139864 G A NPRL3 Missense_Mutation p.R400C 0.34 deleterious(0) possibly_damaging(0.59) TCGA-2W-A8YY-01 16 14026147 14026147 C A ERCC4 Intron 0.38 TCGA-2W-A8YY-01 16 14042247 14042247 C T ERCC4 3'UTR 0.38 TCGA-2W-A8YY-01 16 1412218 1412218 G A GNPTG Silent p.A141A 0.46 TCGA-2W-A8YY-01 16 14294317 14294317 T C MKL2 Intron 0.06 TCGA-2W-A8YY-01 16 1470719 1470719 A G C16orf91 Intron 0.41 TCGA-2W-A8YY-01 16 14742388 14742388 C T BFAR Missense_Mutation p.A136V 0.31 tolerated(0.29) benign(0) TCGA-2W-A8YY-01 16 14755881 14755881 C T BFAR Nonsense_Mutation p.Q306* 0.46 TCGA-2W-A8YY-01 16 14980716 14980716 C T NOMO1 Silent p.G1107G 0.39 TCGA-2W-A8YY-01 16 15027019 15027019 C T NPIPA1 5'Flank 0.35 TCGA-2W-A8YY-01 16 15027052 15027052 C T NPIPA1 5'Flank 0.33 TCGA-2W-A8YY-01 16 1504452 1504452 C T CLCN7 Silent p.T371T 0.30 TCGA-2W-A8YY-01 16 15100380 15100380 G T PDXDC1 Missense_Mutation p.K173N 0.19 tolerated(0.16) benign(0.005) TCGA-2W-A8YY-01 16 15133887 15133887 G T NTAN1 Missense_Mutation p.S193Y 0.39 deleterious(0) possibly_damaging(0.853) TCGA-2W-A8YY-01 16 15141718 15141718 G A NTAN1 Missense_Mutation p.H82Y 0.35 deleterious(0) possibly_damaging(0.628) TCGA-2W-A8YY-01 16 15159118 15159118 G A RRN3 Missense_Mutation p.P555L 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 16 15166892 15166892 A G RRN3 Missense_Mutation p.I348T 0.24 deleterious(0.01) possibly_damaging(0.731) TCGA-2W-A8YY-01 16 15166901 15166901 C T RRN3 Missense_Mutation p.R345H 0.72 deleterious(0.01) probably_damaging(0.991) TCGA-2W-A8YY-01 16 15224596 15224596 C T RP11-1186N24.5 RNA 0.32 TCGA-2W-A8YY-01 16 15225335 15225335 G A RP11-1186N24.5 RNA 0.29 TCGA-2W-A8YY-01 16 1550153 1550153 G A TELO2 Silent p.P330P 0.28 TCGA-2W-A8YY-01 16 1550644 1550644 G A TELO2 Missense_Mutation p.V409M 0.44 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 16 15675129 15675129 C T C16orf45 Silent p.I120I 0.40 TCGA-2W-A8YY-01 16 15729925 15729925 C T KIAA0430 Missense_Mutation p.S140N 0.42 deleterious_low_confidence(0.02) benign(0.004) TCGA-2W-A8YY-01 16 1576692 1576692 C T IFT140 Silent p.A835A 0.27 TCGA-2W-A8YY-01 16 15808819 15808819 C T MYH11 Silent p.T1918T 0.11 TCGA-2W-A8YY-01 16 15811011 15811011 G A MYH11 Silent p.V1837V 0.43 TCGA-2W-A8YY-01 16 15815539 15815539 C T NDE1 Intron 0.64 TCGA-2W-A8YY-01 16 15829332 15829332 C T MYH11 Missense_Mutation p.A1140T 0.38 benign(0.313) TCGA-2W-A8YY-01 16 15841757 15841757 C T MYH11 Missense_Mutation p.D749N 0.24 probably_damaging(0.999) TCGA-2W-A8YY-01 16 16138326 16138326 T C ABCC1 Missense_Mutation p.Y277H 0.33 tolerated(0.36) benign(0.414) TCGA-2W-A8YY-01 16 1614059 1614059 G A IFT140 Missense_Mutation p.T669M 0.54 tolerated(0.11) benign(0.139) TCGA-2W-A8YY-01 16 16146584 16146584 C T ABCC1 Silent p.L462L 0.43 TCGA-2W-A8YY-01 16 16165568 16165568 C T ABCC1 Nonsense_Mutation p.R632* 0.16 TCGA-2W-A8YY-01 16 16235070 16235070 G A ABCC1 Missense_Mutation p.A1510T 0.49 tolerated(0.29) benign(0.002) TCGA-2W-A8YY-01 16 16251616 16251616 G A ABCC6 Silent p.G1262G 0.41 TCGA-2W-A8YY-01 16 16256899 16256899 G A ABCC6 Missense_Mutation p.R1153C 0.31 deleterious(0) possibly_damaging(0.502) TCGA-2W-A8YY-01 16 16363990 16363990 T C NOMO3 Missense_Mutation p.V636A 0.34 deleterious(0.01) possibly_damaging(0.683) TCGA-2W-A8YY-01 16 1637288 1637288 C T IFT140 Missense_Mutation p.R307Q 0.36 tolerated(0.21) benign(0.004) TCGA-2W-A8YY-01 16 16418712 16418712 G A PKD1P1 RNA 0.22 TCGA-2W-A8YY-01 16 1702523 1702523 G A CRAMP1L Missense_Mutation p.R285Q 0.30 deleterious(0.03) benign(0.314) TCGA-2W-A8YY-01 16 1709973 1709973 C A CRAMP1L Silent p.T774T 0.38 TCGA-2W-A8YY-01 16 17201917 17201917 G T XYLT1 3'UTR 0.26 TCGA-2W-A8YY-01 16 17353088 17353088 C T XYLT1 Missense_Mutation p.A224T 0.32 tolerated_low_confidence(0.25) benign(0.003) TCGA-2W-A8YY-01 16 1750595 1750595 T C HN1L 3'UTR 0.46 TCGA-2W-A8YY-01 16 1751159 1751159 C T HN1L 3'UTR 0.50 TCGA-2W-A8YY-01 16 1814378 1814378 C T MAPK8IP3 Missense_Mutation p.A732V 0.43 tolerated(0.33) benign(0.001) TCGA-2W-A8YY-01 16 1816337 1816337 C T MAPK8IP3 Missense_Mutation p.R915W 0.33 deleterious(0) possibly_damaging(0.901) TCGA-2W-A8YY-01 16 1817268 1817268 C T MAPK8IP3 Silent p.H1068H 0.39 TCGA-2W-A8YY-01 16 1817614 1817614 C T MAPK8IP3 Missense_Mutation p.A1095V 0.49 deleterious(0) possibly_damaging(0.846) TCGA-2W-A8YY-01 16 1817858 1817858 G T MAPK8IP3 Silent p.A1153A 0.32 TCGA-2W-A8YY-01 16 1820091 1820091 C T MAPK8IP3 3'UTR 0.25 TCGA-2W-A8YY-01 16 1825360 1825360 C T EME2 Missense_Mutation p.P205L 0.44 tolerated(0.17) benign(0.009) TCGA-2W-A8YY-01 16 1838178 1838178 C A NUBP2 Missense_Mutation p.L214M 0.49 tolerated(0.49) probably_damaging(0.996) TCGA-2W-A8YY-01 16 1841350 1841350 C T IGFALS Missense_Mutation p.A395T 0.43 tolerated(0.13) benign(0.166) TCGA-2W-A8YY-01 16 1841424 1841424 C T IGFALS Missense_Mutation p.R370H 0.31 deleterious(0.05) benign(0.081) TCGA-2W-A8YY-01 16 1841486 1841486 C A IGFALS Missense_Mutation p.K349N 0.47 tolerated(0.09) possibly_damaging(0.579) TCGA-2W-A8YY-01 16 18433420 18433420 C T NPIPA8 5'Flank 0.43 TCGA-2W-A8YY-01 16 18584340 18584340 C T RP11-457I16.2 5'Flank 0.45 TCGA-2W-A8YY-01 16 18806820 18806820 C T ARL6IP1 Missense_Mutation p.R125H 0.18 deleterious(0.04) possibly_damaging(0.594) TCGA-2W-A8YY-01 16 18820467 18820467 C T SMG1 3'UTR 0.27 TCGA-2W-A8YY-01 16 18869491 18869491 C T SMG1 Splice_Site p.X1412_splice 0.43 TCGA-2W-A8YY-01 16 18880551 18880551 C T SMG1 Missense_Mutation p.R903H 0.25 deleterious(0.03) probably_damaging(0.977) TCGA-2W-A8YY-01 16 19056322 19056322 C T TMC7 Missense_Mutation p.P485L 0.33 deleterious(0.03) benign(0.187) TCGA-2W-A8YY-01 16 19087089 19087089 C T COQ7 Silent p.T138T 0.38 TCGA-2W-A8YY-01 16 19126324 19126324 C T ITPRIPL2 Missense_Mutation p.R181C 0.40 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 16 19126343 19126343 C T ITPRIPL2 Missense_Mutation p.A187V 0.27 tolerated(0.07) benign(0.002) TCGA-2W-A8YY-01 16 19126565 19126565 G A ITPRIPL2 Missense_Mutation p.R261H 0.15 deleterious(0.04) probably_damaging(0.964) TCGA-2W-A8YY-01 16 19129224 19129224 T C ITPRIPL2 3'UTR 0.38 TCGA-2W-A8YY-01 16 19129422 19129422 C T ITPRIPL2 3'UTR 0.46 TCGA-2W-A8YY-01 16 19131568 19131568 G A ITPRIPL2 3'UTR 0.60 TCGA-2W-A8YY-01 16 19132718 19132718 G A ITPRIPL2 3'UTR 0.38 TCGA-2W-A8YY-01 16 19195310 19195310 C T SYT17 Silent p.I264I 0.31 TCGA-2W-A8YY-01 16 19474623 19474623 A C TMC5 Missense_Mutation p.K390N 0.31 deleterious(0.03) possibly_damaging(0.881) TCGA-2W-A8YY-01 16 19547728 19547728 G A CCP110 Missense_Mutation p.R246H 0.18 tolerated(0.08) benign(0.007) TCGA-2W-A8YY-01 16 19721873 19721873 G A KNOP1 Silent p.R341R 0.18 TCGA-2W-A8YY-01 16 19870524 19870524 G A GPRC5B 3'UTR 0.44 TCGA-2W-A8YY-01 16 19871677 19871677 G A GPRC5B 3'UTR 0.47 TCGA-2W-A8YY-01 16 19873221 19873221 C T GPRC5B Missense_Mutation p.A369T 0.41 tolerated(0.11) benign(0.359) TCGA-2W-A8YY-01 16 2028641 2028641 C T TBL3 Silent p.A794A 0.41 TCGA-2W-A8YY-01 16 2028708 2028708 C T TBL3 3'UTR 0.43 TCGA-2W-A8YY-01 16 20335392 20335392 C T GP2 Missense_Mutation p.R94H 0.53 deleterious(0) probably_damaging(0.966) TCGA-2W-A8YY-01 16 20387484 20387484 C T PDILT Missense_Mutation p.R150Q 0.32 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 16 20439148 20439148 C T ACSM5 Silent p.V320V 0.50 TCGA-2W-A8YY-01 16 20451707 20451707 G T ACSM5 Missense_Mutation p.K566N 0.38 deleterious(0) possibly_damaging(0.875) TCGA-2W-A8YY-01 16 20552054 20552054 G A ACSM2B Silent p.S517S 0.42 TCGA-2W-A8YY-01 16 20696652 20696652 C A ACSM1 Missense_Mutation p.R89I 0.38 deleterious(0.02) benign(0.409) TCGA-2W-A8YY-01 16 2079698 2079698 G A SLC9A3R2 Missense_Mutation p.R110Q 0.34 tolerated(0.52) benign(0.002) TCGA-2W-A8YY-01 16 20809545 20809545 G A ERI2 Missense_Mutation p.P526L 0.36 tolerated(0.06) benign(0.007) TCGA-2W-A8YY-01 16 20860853 20860853 G T AC004381.6 3'UTR 0.32 TCGA-2W-A8YY-01 16 2087936 2087936 C T SLC9A3R2 Missense_Mutation p.A322V 0.11 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 16 2088484 2088484 C A SLC9A3R2 3'UTR 0.36 TCGA-2W-A8YY-01 16 2089906 2089906 G A NTHL1 3'UTR 0.40 TCGA-2W-A8YY-01 16 20970575 20970575 G A DNAH3 Silent p.A3584A 0.42 TCGA-2W-A8YY-01 16 20975118 20975118 C T DNAH3 Missense_Mutation p.R3363H 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 20975335 20975335 G A DNAH3 Missense_Mutation p.R3291W 0.49 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 20975574 20975574 G A DNAH3 Missense_Mutation p.A3211V 0.45 deleterious(0) possibly_damaging(0.864) TCGA-2W-A8YY-01 16 20975582 20975582 G A DNAH3 Silent p.I3208I 0.42 TCGA-2W-A8YY-01 16 20981212 20981212 G A DNAH3 Missense_Mutation p.S2787L 0.43 deleterious(0) possibly_damaging(0.869) TCGA-2W-A8YY-01 16 21053360 21053360 C T DNAH3 Missense_Mutation p.D1543N 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 2106226 2106226 C T TSC2 Missense_Mutation p.A210V 0.35 tolerated(0.46) benign(0.003) TCGA-2W-A8YY-01 16 2106645 2106645 G A TSC2 Missense_Mutation p.V217I 0.28 tolerated(0.24) benign(0.022) TCGA-2W-A8YY-01 16 21156687 21156687 C T DNAH3 Missense_Mutation p.R88H 0.46 tolerated_low_confidence(0.17) benign(0.001) TCGA-2W-A8YY-01 16 21185398 21185398 C T TMEM159 Silent p.L111L 0.33 TCGA-2W-A8YY-01 16 2121587 2121587 G A TSC2 Missense_Mutation p.R639Q 0.35 deleterious(0.05) benign(0.296) TCGA-2W-A8YY-01 16 21289406 21289406 C A CRYM Missense_Mutation p.R56M 0.14 tolerated(0.07) benign(0.335) TCGA-2W-A8YY-01 16 2129296 2129296 C A TSC2 Missense_Mutation p.L1051I 0.43 deleterious(0.05) probably_damaging(0.997) TCGA-2W-A8YY-01 16 2133802 2133802 G A TSC2 Silent p.T1330T 0.42 TCGA-2W-A8YY-01 16 2134620 2134620 C T TSC2 Missense_Mutation p.S1466L 0.36 tolerated(0.09) possibly_damaging(0.595) TCGA-2W-A8YY-01 16 2150565 2150565 T C PKD1 Missense_Mutation p.T3134A 0.25 probably_damaging(0.975) TCGA-2W-A8YY-01 16 2152116 2152116 G A PKD1 Missense_Mutation p.R3115W 0.61 benign(0.052) TCGA-2W-A8YY-01 16 2154516 2154516 C T PKD1 Missense_Mutation p.S2715N 0.09 benign(0.007) TCGA-2W-A8YY-01 16 2159285 2159285 C T PKD1 Silent p.A1961A 0.38 TCGA-2W-A8YY-01 16 2160109 2160109 C T PKD1 Missense_Mutation p.V1687M 0.43 possibly_damaging(0.667) TCGA-2W-A8YY-01 16 2160401 2160401 C T PKD1 Silent p.T1589T 0.21 TCGA-2W-A8YY-01 16 21652854 21652854 T C IGSF6 3'UTR 0.44 TCGA-2W-A8YY-01 16 2166622 2166622 G T PKD1 Missense_Mutation p.L544I 0.27 benign(0.002) TCGA-2W-A8YY-01 16 21726368 21726368 C T OTOA Silent p.A461A 0.20 TCGA-2W-A8YY-01 16 21811089 21811089 C T RP11-645C24.5 5'Flank 0.41 TCGA-2W-A8YY-01 16 21979965 21979965 A G UQCRC2 Missense_Mutation p.Q210R 0.44 tolerated(0.07) benign(0.044) TCGA-2W-A8YY-01 16 21980007 21980007 G A UQCRC2 Splice_Site p.X224_splice 0.38 TCGA-2W-A8YY-01 16 22000053 22000053 A C PDZD9 Missense_Mutation p.L31V 0.34 tolerated(0.37) probably_damaging(0.999) TCGA-2W-A8YY-01 16 2203428 2203428 G T RAB26 3'UTR 0.41 TCGA-2W-A8YY-01 16 2222368 2222368 G A TRAF7 Missense_Mutation p.A218T 0.43 tolerated(0.6) benign(0.014) TCGA-2W-A8YY-01 16 22237231 22237231 A G EEF2K Missense_Mutation p.S61G 0.20 tolerated_low_confidence(0.14) benign(0.002) TCGA-2W-A8YY-01 16 2226103 2226103 C T TRAF7 Silent p.G600G 0.32 TCGA-2W-A8YY-01 16 2228167 2228167 C A CASKIN1 3'UTR 0.42 TCGA-2W-A8YY-01 16 22335716 22335716 G A POLR3E Silent p.E370E 0.47 TCGA-2W-A8YY-01 16 22337112 22337112 G A POLR3E Missense_Mutation p.R460Q 0.40 deleterious(0.02) possibly_damaging(0.861) TCGA-2W-A8YY-01 16 22545967 22545967 C T NPIPB5 Missense_Mutation p.R555C 0.18 tolerated_low_confidence(0.06) probably_damaging(0.978) TCGA-2W-A8YY-01 16 22580509 22580509 C T RP11-368J21.3 RNA 0.23 TCGA-2W-A8YY-01 16 2283137 2283137 G A E4F1 Missense_Mutation p.V337I 0.28 tolerated(0.17) benign(0.234) TCGA-2W-A8YY-01 16 2305701 2305701 C T RNPS1 Missense_Mutation p.A235T 0.27 deleterious(0.02) probably_damaging(0.914) TCGA-2W-A8YY-01 16 23079150 23079150 C T USP31 3'UTR 0.31 TCGA-2W-A8YY-01 16 23085199 23085199 A G USP31 Missense_Mutation p.Y727H 0.25 tolerated(0.16) benign(0.015) TCGA-2W-A8YY-01 16 23113747 23113747 C T USP31 Missense_Mutation p.R376H 0.35 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 16 23200701 23200701 C T SCNN1G Silent p.T109T 0.32 TCGA-2W-A8YY-01 16 23364372 23364372 G A SCNN1B Missense_Mutation p.G188R 0.37 tolerated(0.5) benign(0.013) TCGA-2W-A8YY-01 16 23453813 23453813 T C COG7 Missense_Mutation p.T197A 0.18 tolerated(0.11) benign(0.003) TCGA-2W-A8YY-01 16 23585655 23585655 G T UBFD1 3'UTR 0.39 TCGA-2W-A8YY-01 16 23614987 23614987 G T PALB2 Missense_Mutation p.F1118L 0.22 deleterious(0.02) benign(0.391) TCGA-2W-A8YY-01 16 23654329 23654329 C T DCTN5 Silent p.I34I 0.09 TCGA-2W-A8YY-01 16 23692284 23692284 G A PLK1 Silent p.K209K 0.53 TCGA-2W-A8YY-01 16 23706242 23706242 C T ERN2 Missense_Mutation p.R684Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 2373673 2373673 C T ABCA3 Missense_Mutation p.R155Q 0.36 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 16 239976 239976 G A LUC7L Missense_Mutation p.A322V 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-2W-A8YY-01 16 24226645 24226645 T G PRKCB 3'UTR 0.46 TCGA-2W-A8YY-01 16 24226846 24226846 A T PRKCB 3'UTR 0.21 TCGA-2W-A8YY-01 16 24373714 24373714 T - CACNG3 3'UTR 0.25 TCGA-2W-A8YY-01 16 24570885 24570885 C A RBBP6 Missense_Mutation p.S245Y 0.35 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-2W-A8YY-01 16 24572985 24572985 T C RBBP6 Silent p.H300H 0.22 TCGA-2W-A8YY-01 16 24800941 24800941 C A TNRC6A Silent p.V326V 0.15 TCGA-2W-A8YY-01 16 24817584 24817584 C T TNRC6A Missense_Mutation p.R1437W 0.24 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 24826572 24826572 G A TNRC6A Missense_Mutation p.G1593S 0.44 tolerated(1) possibly_damaging(0.786) TCGA-2W-A8YY-01 16 24835615 24835615 G A TNRC6A 3'UTR 0.35 TCGA-2W-A8YY-01 16 24888592 24888592 C T SLC5A11 Missense_Mutation p.A164V 0.28 deleterious(0) probably_damaging(0.96) TCGA-2W-A8YY-01 16 24918457 24918457 G A SLC5A11 Missense_Mutation p.R409Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 24920333 24920333 C A SLC5A11 Silent p.L522L 0.57 TCGA-2W-A8YY-01 16 2510964 2510964 C T C16orf59 Missense_Mutation p.S115F 0.13 deleterious(0.01) benign(0.351) TCGA-2W-A8YY-01 16 25239791 25239791 G A AQP8 Missense_Mutation p.R255H 0.31 deleterious(0.02) benign(0.308) TCGA-2W-A8YY-01 16 25250349 25250349 G A ZKSCAN2 3'UTR 0.18 TCGA-2W-A8YY-01 16 25255596 25255596 G A ZKSCAN2 Silent p.G497G 0.40 TCGA-2W-A8YY-01 16 25266548 25266548 G A ZKSCAN2 Missense_Mutation p.R189C 0.55 deleterious(0.04) benign(0.255) TCGA-2W-A8YY-01 16 256059 256059 A G LUC7L Missense_Mutation p.S152P 0.42 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 16 2581130 2581130 C T CEMP1 5'UTR 0.44 TCGA-2W-A8YY-01 16 26147209 26147209 G A HS3ST4 Silent p.A337A 0.31 TCGA-2W-A8YY-01 16 2647998 2647998 C A PDPK1 3'UTR 0.18 TCGA-2W-A8YY-01 16 2652978 2652978 A G PDPK1 3'UTR 0.18 TCGA-2W-A8YY-01 16 2653013 2653013 T - PDPK1 3'UTR 0.12 TCGA-2W-A8YY-01 16 2672732 2672732 G A PDPK2 RNA 0.42 TCGA-2W-A8YY-01 16 27078578 27078578 A G C16orf82 RNA 0.29 TCGA-2W-A8YY-01 16 27080102 27080102 G A C16orf82 RNA 0.41 TCGA-2W-A8YY-01 16 27245526 27245526 C T NSMCE1 Missense_Mutation p.D107N 0.50 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 27356334 27356334 C T IL4R Silent p.S118S 0.10 TCGA-2W-A8YY-01 16 27373640 27373640 G A IL4R Missense_Mutation p.D323N 0.40 tolerated(0.11) benign(0.073) TCGA-2W-A8YY-01 16 27374348 27374348 C A IL4R Missense_Mutation p.L559I 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 16 27374415 27374415 C T IL4R Missense_Mutation p.A581V 0.43 tolerated(0.07) benign(0.191) TCGA-2W-A8YY-01 16 27448918 27448918 T G IL21R Missense_Mutation p.F88V 0.44 deleterious(0.01) possibly_damaging(0.804) TCGA-2W-A8YY-01 16 27460292 27460292 C T IL21R Silent p.S435S 0.34 TCGA-2W-A8YY-01 16 27460548 27460548 C T IL21R Missense_Mutation p.R521C 0.16 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 16 27473639 27473639 G A GTF3C1 Silent p.P2031P 0.57 TCGA-2W-A8YY-01 16 27476595 27476595 C T GTF3C1 Missense_Mutation p.A1781T 0.36 tolerated(0.63) benign(0.001) TCGA-2W-A8YY-01 16 27476681 27476681 G A GTF3C1 Missense_Mutation p.T1752M 0.56 deleterious(0.01) benign(0.386) TCGA-2W-A8YY-01 16 27481514 27481514 G T GTF3C1 Missense_Mutation p.L1577M 0.24 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 27499904 27499904 G A GTF3C1 Missense_Mutation p.S1161F 0.25 deleterious(0) possibly_damaging(0.723) TCGA-2W-A8YY-01 16 27499945 27499945 G A GTF3C1 Silent p.A1147A 0.43 TCGA-2W-A8YY-01 16 27504562 27504562 C T GTF3C1 Missense_Mutation p.R945H 0.19 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 16 27518325 27518325 C T GTF3C1 Silent p.S465S 0.32 TCGA-2W-A8YY-01 16 27519976 27519976 A G GTF3C1 Missense_Mutation p.I376T 0.31 deleterious(0) possibly_damaging(0.717) TCGA-2W-A8YY-01 16 27523100 27523100 G A GTF3C1 Missense_Mutation p.R366W 0.29 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 2758184 2758184 C T KCTD5 3'UTR 0.38 TCGA-2W-A8YY-01 16 27642394 27642394 C T KIAA0556 Nonsense_Mutation p.R107* 0.41 TCGA-2W-A8YY-01 16 27760988 27760988 C A KIAA0556 Missense_Mutation p.L903I 0.21 deleterious(0.03) probably_damaging(0.919) TCGA-2W-A8YY-01 16 27763077 27763077 C T KIAA0556 Silent p.T1128T 0.27 TCGA-2W-A8YY-01 16 27781217 27781217 C T KIAA0556 Silent p.C1337C 0.39 TCGA-2W-A8YY-01 16 27781235 27781235 C T KIAA0556 Silent p.G1343G 0.38 TCGA-2W-A8YY-01 16 27786322 27786322 C T KIAA0556 Missense_Mutation p.R1456C 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 27786370 27786370 C T KIAA0556 Missense_Mutation p.R1472W 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 27789204 27789204 A G KIAA0556 Missense_Mutation p.N1572S 0.09 deleterious(0.05) benign(0.031) TCGA-2W-A8YY-01 16 27802677 27802677 G A GSG1L 3'UTR 0.37 TCGA-2W-A8YY-01 16 27895877 27895877 G T GSG1L Silent p.L160L 0.20 TCGA-2W-A8YY-01 16 2807867 2807867 G A SRRM2 Missense_Mutation p.V146I 0.36 unknown(0) TCGA-2W-A8YY-01 16 28109783 28109783 G A XPO6 3'UTR 0.45 TCGA-2W-A8YY-01 16 28118870 28118870 G T XPO6 Missense_Mutation p.L824I 0.40 tolerated(0.25) benign(0.037) TCGA-2W-A8YY-01 16 2812312 2812312 C T SRRM2 Nonsense_Mutation p.R595* 0.32 TCGA-2W-A8YY-01 16 2814278 2814278 G A SRRM2 Missense_Mutation p.G1250D 0.43 unknown(0) TCGA-2W-A8YY-01 16 28145227 28145227 G A XPO6 Missense_Mutation p.R491W 0.56 deleterious(0.03) possibly_damaging(0.762) TCGA-2W-A8YY-01 16 2815146 2815146 G A SRRM2 Silent p.S1539S 0.51 TCGA-2W-A8YY-01 16 2816356 2816356 C T SRRM2 Missense_Mutation p.R1943C 0.33 unknown(0) TCGA-2W-A8YY-01 16 2817977 2817977 C T SRRM2 Missense_Mutation p.T2483I 0.43 benign(0.118) TCGA-2W-A8YY-01 16 28374273 28374273 G T NPIPB6 5'UTR 0.11 TCGA-2W-A8YY-01 16 28489096 28489096 C T CLN3 Missense_Mutation p.A387T 0.17 deleterious(0) probably_damaging(0.957) TCGA-2W-A8YY-01 16 28506979 28506979 C T APOBR Missense_Mutation p.T206M 0.24 deleterious(0.01) benign(0.053) TCGA-2W-A8YY-01 16 28511091 28511091 G A IL27 Missense_Mutation p.R205C 0.41 deleterious(0) possibly_damaging(0.653) TCGA-2W-A8YY-01 16 28602190 28602190 C T CCDC101 Silent p.L233L 0.46 TCGA-2W-A8YY-01 16 28602910 28602910 G T CCDC101 Splice_Site p.X256_splice 0.18 TCGA-2W-A8YY-01 16 28607757 28607757 T C SULT1A2 5'UTR 0.32 TCGA-2W-A8YY-01 16 28617197 28617197 G A SULT1A1 Missense_Mutation p.A278V 0.08 tolerated(0.15) benign(0.013) TCGA-2W-A8YY-01 16 28841330 28841330 G A ATXN2L Missense_Mutation p.A329T 0.30 deleterious(0.01) possibly_damaging(0.547) TCGA-2W-A8YY-01 16 28845896 28845896 C T ATXN2L Missense_Mutation p.A772V 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-2W-A8YY-01 16 28854356 28854356 G A TUFM Silent p.T436T 0.45 TCGA-2W-A8YY-01 16 28878215 28878215 G A SH2B1 Missense_Mutation p.G267E 0.29 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-2W-A8YY-01 16 28883291 28883291 G A SH2B1 Silent p.P500P 0.40 TCGA-2W-A8YY-01 16 28884870 28884870 C T SH2B1 Missense_Mutation p.A667V 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.499) TCGA-2W-A8YY-01 16 28884918 28884918 C T SH2B1 Missense_Mutation p.A683V 0.16 tolerated_low_confidence(0.17) possibly_damaging(0.499) TCGA-2W-A8YY-01 16 28884949 28884949 C A SH2B1 Silent p.V693V 0.13 TCGA-2W-A8YY-01 16 28890000 28890000 C T ATP2A1 Missense_Mutation p.A3V 0.28 deleterious(0.04) benign(0.035) TCGA-2W-A8YY-01 16 28898844 28898844 A G ATP2A1 Silent p.E243E 0.37 TCGA-2W-A8YY-01 16 28909751 28909751 T C ATP2A1 Silent p.S581S 0.34 TCGA-2W-A8YY-01 16 28915619 28915619 T C ATP2A1 3'UTR 0.32 TCGA-2W-A8YY-01 16 28992799 28992799 G A SPNS1 Silent p.P224P 0.31 TCGA-2W-A8YY-01 16 29001142 29001142 G T LAT Missense_Mutation p.A238S 0.46 tolerated_low_confidence(0.51) benign(0.047) TCGA-2W-A8YY-01 16 2904015 2904015 G T PRSS22 Missense_Mutation p.P190T 0.29 deleterious(0) possibly_damaging(0.622) TCGA-2W-A8YY-01 16 29086404 29086404 G A RRN3P2 RNA 0.52 TCGA-2W-A8YY-01 16 29415139 29415140 - T NPIPB11 5'UTR 0.14 TCGA-2W-A8YY-01 16 29677468 29677468 C T SPN 3'UTR 0.35 TCGA-2W-A8YY-01 16 29756110 29756110 G A C16orf54 Missense_Mutation p.R55C 0.34 tolerated_low_confidence(0.07) probably_damaging(0.942) TCGA-2W-A8YY-01 16 29791580 29791580 G A ZG16 Missense_Mutation p.G115D 0.32 deleterious(0.02) possibly_damaging(0.619) TCGA-2W-A8YY-01 16 29808252 29808252 C T KIF22 Missense_Mutation p.R37C 0.30 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 16 29808316 29808316 C T KIF22 Missense_Mutation p.A58V 0.30 tolerated(0.26) benign(0.183) TCGA-2W-A8YY-01 16 29816223 29816223 G A KIF22 Missense_Mutation p.R589H 0.46 tolerated(0.07) probably_damaging(0.998) TCGA-2W-A8YY-01 16 29816671 29816671 A G KIF22 3'UTR 0.10 TCGA-2W-A8YY-01 16 29820871 29820871 G A MAZ Silent p.T430T 0.32 TCGA-2W-A8YY-01 16 29821825 29821825 G A MAZ 3'UTR 0.36 TCGA-2W-A8YY-01 16 29826572 29826572 G T PRRT2 3'Flank 0.36 TCGA-2W-A8YY-01 16 2983875 2983875 C T FLYWCH1 Missense_Mutation p.R469W 0.34 deleterious(0) benign(0.438) TCGA-2W-A8YY-01 16 29856191 29856191 C T MVP Missense_Mutation p.A671V 0.21 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 16 2988367 2988367 C T FLYWCH1 Missense_Mutation p.R653C 0.32 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 29884637 29884637 C A SEZ6L2 Missense_Mutation p.E804D 0.30 tolerated(0.07) possibly_damaging(0.89) TCGA-2W-A8YY-01 16 29888733 29888733 C T SEZ6L2 Missense_Mutation p.A590T 0.43 tolerated(0.12) possibly_damaging(0.642) TCGA-2W-A8YY-01 16 29906660 29906660 C T SEZ6L2 Missense_Mutation p.R258Q 0.28 deleterious(0) probably_damaging(0.937) TCGA-2W-A8YY-01 16 29934517 29934517 C T KCTD13 Silent p.A136A 0.14 TCGA-2W-A8YY-01 16 29996576 29996576 C T TAOK2 Missense_Mutation p.R489W 0.34 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 16 29997963 29997963 C T TAOK2 Silent p.G790G 0.50 TCGA-2W-A8YY-01 16 29999162 29999162 G A TAOK2 Missense_Mutation p.R1190Q 0.19 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-2W-A8YY-01 16 30006422 30006422 A G HIRIP3 Splice_Site p.X101_splice 0.58 TCGA-2W-A8YY-01 16 30018504 30018504 C T DOC2A Missense_Mutation p.R215H 0.36 tolerated(0.31) benign(0.001) TCGA-2W-A8YY-01 16 30064720 30064720 G A ALDOA Intron 0.42 TCGA-2W-A8YY-01 16 30081525 30081525 G A ALDOA Missense_Mutation p.A417T 0.53 tolerated(0.18) benign(0.056) TCGA-2W-A8YY-01 16 30102259 30102259 C T TBX6 Missense_Mutation p.R58H 0.43 tolerated(0.17) benign(0.001) TCGA-2W-A8YY-01 16 30103694 30103694 C T YPEL3 3'UTR 0.33 TCGA-2W-A8YY-01 16 30119560 30119560 G A GDPD3 Nonsense_Mutation p.R265* 0.27 TCGA-2W-A8YY-01 16 30125803 30125803 G A MAPK3 3'UTR 0.08 TCGA-2W-A8YY-01 16 30133187 30133187 C T MAPK3 Missense_Mutation p.R104Q 0.41 tolerated(0.33) benign(0.009) TCGA-2W-A8YY-01 16 3021374 3021374 C T PAQR4 Missense_Mutation p.T128I 0.32 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 16 3022712 3022712 C T PKMYT1 3'Flank 0.26 TCGA-2W-A8YY-01 16 3026824 3026824 G A PKMYT1 Silent p.G73G 0.13 TCGA-2W-A8YY-01 16 3029766 3029766 C T PKMYT1 5'UTR 0.34 TCGA-2W-A8YY-01 16 30441257 30441257 C A DCTPP1 Missense_Mutation p.E15D 0.35 tolerated(0.25) benign(0.001) TCGA-2W-A8YY-01 16 30456319 30456319 C T SEPHS2 Missense_Mutation p.V244I 0.32 benign(0.103) TCGA-2W-A8YY-01 16 30485517 30485517 C T ITGAL Missense_Mutation p.A21V 0.35 tolerated(0.08) benign(0.003) TCGA-2W-A8YY-01 16 30505572 30505572 C T ITGAL Missense_Mutation p.S418L 0.50 tolerated(0.21) benign(0.002) TCGA-2W-A8YY-01 16 30567266 30567266 C T ZNF764 Missense_Mutation p.R159H 0.43 tolerated(0.45) benign(0.02) TCGA-2W-A8YY-01 16 30583582 30583582 C T ZNF688 5'UTR 0.25 TCGA-2W-A8YY-01 16 30593753 30593753 A G ZNF785 3'UTR 0.50 TCGA-2W-A8YY-01 16 30594104 30594104 C T ZNF785 Missense_Mutation p.R332H 0.38 tolerated(0.06) benign(0.003) TCGA-2W-A8YY-01 16 30594395 30594395 C T ZNF785 Missense_Mutation p.R235H 0.39 deleterious(0) possibly_damaging(0.616) TCGA-2W-A8YY-01 16 30616117 30616117 C T ZNF689 Missense_Mutation p.R324Q 0.45 tolerated(0.07) probably_damaging(0.957) TCGA-2W-A8YY-01 16 30616192 30616192 C T ZNF689 Missense_Mutation p.R299H 0.37 tolerated(0.06) probably_damaging(0.98) TCGA-2W-A8YY-01 16 30621410 30621410 C T ZNF689 5'UTR 0.44 TCGA-2W-A8YY-01 16 3063522 3063522 C A CLDN9 Silent p.S53S 0.07 TCGA-2W-A8YY-01 16 3065251 3065252 - A CLDN6 3'UTR 0.22 TCGA-2W-A8YY-01 16 3065768 3065768 G T CLDN6 Silent p.V85V 0.25 TCGA-2W-A8YY-01 16 30680251 30680251 C T FBRS Missense_Mutation p.R773W 0.21 possibly_damaging(0.844) TCGA-2W-A8YY-01 16 30731484 30731484 G A SRCAP Missense_Mutation p.R940Q 0.30 unknown(0) TCGA-2W-A8YY-01 16 30732119 30732119 C T SRCAP Nonsense_Mutation p.R1025* 0.36 TCGA-2W-A8YY-01 16 3073477 3073477 C T HCFC1R1 Silent p.E50E 0.42 TCGA-2W-A8YY-01 16 3074209 3074209 G A HCFC1R1 5'UTR 0.41 TCGA-2W-A8YY-01 16 30749523 30749523 G A SRCAP Missense_Mutation p.R2721Q 0.48 unknown(0) TCGA-2W-A8YY-01 16 3076273 3076273 C T THOC6 Missense_Mutation p.R116C 0.39 tolerated(0.15) benign(0.009) TCGA-2W-A8YY-01 16 30768434 30768434 G A PHKG2 3'UTR 0.44 TCGA-2W-A8YY-01 16 30792605 30792605 G T ZNF629 3'UTR 0.28 TCGA-2W-A8YY-01 16 30794477 30794477 C T ZNF629 Missense_Mutation p.R391Q 0.43 tolerated(0.53) probably_damaging(0.998) TCGA-2W-A8YY-01 16 3081450 3081450 G A CCDC64B Intron 0.35 TCGA-2W-A8YY-01 16 30934310 30934310 A - FBXL19 5'Flank 0.29 TCGA-2W-A8YY-01 16 30975962 30975962 G A SETD1A Missense_Mutation p.R300Q 0.48 possibly_damaging(0.885) TCGA-2W-A8YY-01 16 30990579 30990579 C A SETD1A Missense_Mutation p.L1158M 0.29 unknown(0) TCGA-2W-A8YY-01 16 30995662 30995662 G T SETD1A 3'UTR 0.54 TCGA-2W-A8YY-01 16 30997059 30997059 G A HSD3B7 Missense_Mutation p.R27Q 0.30 tolerated(0.11) benign(0.037) TCGA-2W-A8YY-01 16 30999537 30999537 G A HSD3B7 3'UTR 0.26 TCGA-2W-A8YY-01 16 31072369 31072369 G A ZNF668 3'UTR 0.09 TCGA-2W-A8YY-01 16 31073214 31073214 G A ZNF668 Silent p.F368F 0.46 TCGA-2W-A8YY-01 16 31073589 31073589 G A ZNF668 Silent p.G243G 0.34 TCGA-2W-A8YY-01 16 3107531 3107531 G A MMP25 Splice_Site p.X308_splice 0.09 TCGA-2W-A8YY-01 16 3107574 3107574 C T MMP25 Silent p.D322D 0.46 TCGA-2W-A8YY-01 16 31087818 31087818 G A ZNF646 Missense_Mutation p.R58H 0.42 tolerated(0.05) benign(0.016) TCGA-2W-A8YY-01 16 31089663 31089663 G A ZNF646 Missense_Mutation p.R673Q 0.22 tolerated(0.12) possibly_damaging(0.485) TCGA-2W-A8YY-01 16 31090352 31090352 G A ZNF646 Missense_Mutation p.A903T 0.41 deleterious(0.02) benign(0.201) TCGA-2W-A8YY-01 16 31092325 31092325 G A ZNF646 Silent p.L1560L 0.21 TCGA-2W-A8YY-01 16 31097732 31097732 G A PRSS53 Nonsense_Mutation p.R197* 0.42 TCGA-2W-A8YY-01 16 31121058 31121058 G A BCKDK Missense_Mutation p.R110H 0.36 tolerated(0.07) possibly_damaging(0.806) TCGA-2W-A8YY-01 16 31121780 31121780 G A BCKDK Missense_Mutation p.R201H 0.33 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 16 31143856 31143856 G A PRSS8 Missense_Mutation p.T200M 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-2W-A8YY-01 16 31154788 31154788 G A PRSS36 Silent p.C325C 0.36 TCGA-2W-A8YY-01 16 31157218 31157218 G A PRSS36 Silent p.A204A 0.48 TCGA-2W-A8YY-01 16 312481 312481 C T ITFG3 Silent p.G300G 0.45 TCGA-2W-A8YY-01 16 31367278 31367278 C T ITGAX Silent p.S34S 0.54 TCGA-2W-A8YY-01 16 31368808 31368808 G A ITGAX Intron 0.52 TCGA-2W-A8YY-01 16 31372439 31372439 C T ITGAX Missense_Mutation p.S306L 0.22 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 31382502 31382502 C T ITGAX Missense_Mutation p.A603V 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-2W-A8YY-01 16 31392286 31392286 G A ITGAX Silent p.G1115G 0.46 TCGA-2W-A8YY-01 16 3139797 3139797 G A ZSCAN10 Silent p.G491G 0.27 TCGA-2W-A8YY-01 16 3140194 3140194 C T ZSCAN10 Missense_Mutation p.R359H 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 3140344 3140344 G A ZSCAN10 Missense_Mutation p.A309V 0.11 deleterious(0.04) benign(0.114) TCGA-2W-A8YY-01 16 31405625 31405625 G A ITGAD Missense_Mutation p.G34S 0.35 tolerated(0.26) benign(0.039) TCGA-2W-A8YY-01 16 31418981 31418981 G A ITGAD Missense_Mutation p.A284T 0.36 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 31429659 31429659 C T ITGAD Missense_Mutation p.A885V 0.29 deleterious(0.01) possibly_damaging(0.897) TCGA-2W-A8YY-01 16 31429689 31429689 C T ITGAD Missense_Mutation p.A895V 0.31 deleterious(0.02) possibly_damaging(0.834) TCGA-2W-A8YY-01 16 31434754 31434754 G T ITGAD Missense_Mutation p.D981Y 0.42 deleterious(0) possibly_damaging(0.876) TCGA-2W-A8YY-01 16 31439673 31439673 G A COX6A2 5'UTR 0.39 TCGA-2W-A8YY-01 16 31447428 31447428 A G ZNF843 Missense_Mutation p.L248P 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.883) TCGA-2W-A8YY-01 16 314662 314662 C T ITFG3 Missense_Mutation p.P465L 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 31485205 31485205 C T TGFB1I1 Missense_Mutation p.P78S 0.44 tolerated(0.15) possibly_damaging(0.825) TCGA-2W-A8YY-01 16 31498732 31498732 G A SLC5A2 Intron 0.50 TCGA-2W-A8YY-01 16 31500062 31500062 G A SLC5A2 Missense_Mutation p.A417T 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 31501536 31501536 G A SLC5A2 Missense_Mutation p.A593T 0.30 tolerated(0.53) benign(0.001) TCGA-2W-A8YY-01 16 31501786 31501786 C T SLC5A2 Missense_Mutation p.A650V 0.44 deleterious(0) benign(0.001) TCGA-2W-A8YY-01 16 3169366 3169366 C T ZNF205 Silent p.C235C 0.24 TCGA-2W-A8YY-01 16 31765268 31765268 T C ZNF720 Intron 0.44 TCGA-2W-A8YY-01 16 3187240 3187240 C T ZNF213 5'UTR 0.09 TCGA-2W-A8YY-01 16 3191247 3191247 C T ZNF213 Missense_Mutation p.R427W 0.24 deleterious(0) benign(0.419) TCGA-2W-A8YY-01 16 31926879 31926879 A C ZNF267 Missense_Mutation p.K437Q 0.48 deleterious(0.04) probably_damaging(0.981) TCGA-2W-A8YY-01 16 3197359 3197359 G A CASP16 Missense_Mutation p.R7Q 0.37 tolerated(1) benign(0.005) TCGA-2W-A8YY-01 16 3197820 3197820 T G CASP16 Silent p.G53G 0.44 TCGA-2W-A8YY-01 16 32266288 32266288 G A TP53TG3D 3'UTR 0.24 TCGA-2W-A8YY-01 16 32890853 32890853 C A SLC6A10P Splice_Site 0.26 TCGA-2W-A8YY-01 16 3299650 3299650 G A MEFV Silent p.S347S 0.34 TCGA-2W-A8YY-01 16 332305 332305 G A ARHGDIG Missense_Mutation p.A116T 0.32 tolerated(0.34) benign(0.023) TCGA-2W-A8YY-01 16 334698 334698 G A PDIA2 Missense_Mutation p.R149Q 0.38 deleterious(0.03) possibly_damaging(0.826) TCGA-2W-A8YY-01 16 335526 335526 C T PDIA2 Silent p.D314D 0.33 TCGA-2W-A8YY-01 16 3406510 3406510 C T OR2C1 Silent p.G190G 0.14 TCGA-2W-A8YY-01 16 3433177 3433177 G A ZSCAN32 Missense_Mutation p.S378F 0.29 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 16 3452365 3452365 G A ZNF174 Missense_Mutation p.V121M 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 3458623 3458623 C T ZNF174 Missense_Mutation p.R310C 0.22 deleterious(0.03) benign(0.001) TCGA-2W-A8YY-01 16 34712490 34712490 T C RP11-80F22.9 RNA 0.88 TCGA-2W-A8YY-01 16 3535688 3535688 A G NAA60 3'UTR 0.15 TCGA-2W-A8YY-01 16 3536020 3536020 C T NAA60 3'UTR 0.33 TCGA-2W-A8YY-01 16 3536928 3536928 G A NAA60 3'UTR 0.15 TCGA-2W-A8YY-01 16 3543710 3543710 C A C16orf90 3'UTR 0.41 TCGA-2W-A8YY-01 16 3550986 3550986 C T CLUAP1 5'UTR 0.41 TCGA-2W-A8YY-01 16 3551087 3551087 G A CLUAP1 Missense_Mutation p.R7H 0.34 deleterious(0) probably_damaging(0.957) TCGA-2W-A8YY-01 16 3573181 3573181 A G CLUAP1 Missense_Mutation p.E246G 0.41 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 3613907 3613907 C T NLRC3 Missense_Mutation p.R391H 0.50 tolerated(0.25) benign(0.004) TCGA-2W-A8YY-01 16 3614686 3614686 C T NLRC3 Nonsense_Mutation p.W131* 0.41 TCGA-2W-A8YY-01 16 3647563 3647563 C T SLX4 Silent p.T500T 0.36 TCGA-2W-A8YY-01 16 3658809 3658809 C A SLX4 Nonsense_Mutation p.E53* 0.40 TCGA-2W-A8YY-01 16 3706127 3706127 C T DNASE1 Silent p.Y87Y 0.30 TCGA-2W-A8YY-01 16 3706171 3706171 A G DNASE1 Missense_Mutation p.Y102C 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 3775214 3775214 C T CREBBP 3'UTR 0.41 TCGA-2W-A8YY-01 16 3778767 3778767 G A CREBBP Missense_Mutation p.P2094L 0.58 unknown(0) TCGA-2W-A8YY-01 16 3779095 3779095 G A CREBBP Missense_Mutation p.R1985C 0.36 unknown(0) TCGA-2W-A8YY-01 16 3900775 3900775 C T CREBBP Silent p.P107P 0.33 TCGA-2W-A8YY-01 16 4014069 4014069 G A ADCY9 3'UTR 0.50 TCGA-2W-A8YY-01 16 4163952 4163952 C T ADCY9 Missense_Mutation p.G498S 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 4163961 4163961 C T ADCY9 Missense_Mutation p.V495I 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 16 419116 419116 G A MRPL28 Silent p.T131T 0.38 TCGA-2W-A8YY-01 16 425361 425361 C T TMEM8A Silent p.S433S 0.47 TCGA-2W-A8YY-01 16 4312594 4312594 C T TFAP4 Silent p.A66A 0.43 TCGA-2W-A8YY-01 16 4384870 4384870 C T GLIS2 Silent p.S138S 0.45 TCGA-2W-A8YY-01 16 4407212 4407212 G A CORO7 Missense_Mutation p.A881V 0.22 tolerated(0.32) benign(0.005) TCGA-2W-A8YY-01 16 4432694 4432694 G A VASN Missense_Mutation p.A606T 0.33 tolerated(0.18) benign(0.014) TCGA-2W-A8YY-01 16 4432984 4432984 C A VASN 3'UTR 0.44 TCGA-2W-A8YY-01 16 4437992 4437992 C T CORO7 Silent p.S260S 0.34 TCGA-2W-A8YY-01 16 4457557 4457557 G A CORO7 Silent p.S144S 0.59 TCGA-2W-A8YY-01 16 4463375 4463375 C T CORO7 Missense_Mutation p.A31T 0.37 tolerated(0.42) benign(0.003) TCGA-2W-A8YY-01 16 4498812 4498812 G A DNAJA3 Missense_Mutation p.G402R 0.33 deleterious(0.01) possibly_damaging(0.75) TCGA-2W-A8YY-01 16 456385 456385 G A DECR2 Silent p.P63P 0.27 TCGA-2W-A8YY-01 16 4626407 4626407 C T C16orf96 Silent p.S642S 0.48 TCGA-2W-A8YY-01 16 46534376 46534376 C T ANKRD26P1 RNA 0.13 TCGA-2W-A8YY-01 16 4659070 4659070 T C UBALD1 3'UTR 0.29 TCGA-2W-A8YY-01 16 46629469 46629469 C T SHCBP1 Missense_Mutation p.A487T 0.16 deleterious(0) probably_damaging(0.941) TCGA-2W-A8YY-01 16 46629513 46629513 C T SHCBP1 Missense_Mutation p.R472Q 0.24 tolerated(0.06) benign(0.354) TCGA-2W-A8YY-01 16 46696173 46696173 C T VPS35 Silent p.T683T 0.47 TCGA-2W-A8YY-01 16 46729544 46729544 C T ORC6 Nonsense_Mutation p.R174* 0.40 TCGA-2W-A8YY-01 16 46737641 46737641 C T MYLK3 3'Flank 0.39 TCGA-2W-A8YY-01 16 46774049 46774049 C T MYLK3 Missense_Mutation p.R163Q 0.36 tolerated(0.28) benign(0) TCGA-2W-A8YY-01 16 47116088 47116088 G A NETO2 3'UTR 0.61 TCGA-2W-A8YY-01 16 47120160 47120160 G T NETO2 Missense_Mutation p.P325H 0.50 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 16 47347697 47347697 A G ITFG1 Silent p.C280C 0.13 TCGA-2W-A8YY-01 16 4739016 4739016 G A MGRN1 3'UTR 0.53 TCGA-2W-A8YY-01 16 4739443 4739443 C T MGRN1 3'UTR 0.10 TCGA-2W-A8YY-01 16 47622965 47622965 A G PHKB Silent p.T340T 0.39 TCGA-2W-A8YY-01 16 48167717 48167717 C T ABCC12 Missense_Mutation p.E337K 0.09 tolerated(0.07) benign(0.073) TCGA-2W-A8YY-01 16 48180238 48180238 A G ABCC12 Missense_Mutation p.I33T 0.38 deleterious(0.03) benign(0.099) TCGA-2W-A8YY-01 16 48180283 48180283 C T ABCC12 Missense_Mutation p.R18Q 0.44 tolerated(0.23) benign(0.006) TCGA-2W-A8YY-01 16 48204854 48204854 A G ABCC11 Silent p.R1241R 0.50 TCGA-2W-A8YY-01 16 48221146 48221146 C A ABCC11 Missense_Mutation p.A967S 0.37 tolerated(0.14) benign(0.378) TCGA-2W-A8YY-01 16 4829704 4829704 C A SEPT12 Missense_Mutation p.W270C 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 16 4829783 4829783 C T SEPT12 Missense_Mutation p.R244Q 0.31 tolerated(0.56) benign(0.06) TCGA-2W-A8YY-01 16 4837499 4837499 A C SEPT12 Missense_Mutation p.F50V 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 48381601 48381601 G A LONP2 Missense_Mutation p.A708T 0.08 deleterious(0.03) probably_damaging(0.921) TCGA-2W-A8YY-01 16 48399453 48399453 T C SIAH1 5'UTR 0.40 TCGA-2W-A8YY-01 16 48576971 48576971 C T N4BP1 Missense_Mutation p.M845I 0.37 tolerated(0.89) benign(0.001) TCGA-2W-A8YY-01 16 4920221 4920221 C T UBN1 Missense_Mutation p.A397V 0.19 tolerated(0.32) benign(0.002) TCGA-2W-A8YY-01 16 4934887 4934887 C T PPL Missense_Mutation p.D1257N 0.46 deleterious(0.04) possibly_damaging(0.786) TCGA-2W-A8YY-01 16 4935090 4935090 G A PPL Missense_Mutation p.A1189V 0.37 deleterious(0.03) probably_damaging(0.995) TCGA-2W-A8YY-01 16 49412407 49412407 C T C16orf78 Silent p.D99D 0.47 TCGA-2W-A8YY-01 16 49412410 49412410 C T C16orf78 Silent p.A100A 0.47 TCGA-2W-A8YY-01 16 49670417 49670417 C T ZNF423 Silent p.S882S 0.19 TCGA-2W-A8YY-01 16 49671193 49671193 C T ZNF423 Missense_Mutation p.A624T 0.27 tolerated(0.58) benign(0.002) TCGA-2W-A8YY-01 16 49671644 49671644 C T ZNF423 Silent p.Q473Q 0.09 TCGA-2W-A8YY-01 16 50112703 50112703 T G HEATR3 Missense_Mutation p.I272S 0.48 tolerated(0.25) benign(0.007) TCGA-2W-A8YY-01 16 50264455 50264455 T C PAPD5 3'UTR 0.26 TCGA-2W-A8YY-01 16 50326729 50326729 G A ADCY7 Missense_Mutation p.R227H 0.39 tolerated(0.19) possibly_damaging(0.847) TCGA-2W-A8YY-01 16 50339437 50339437 C T ADCY7 Missense_Mutation p.S540L 0.35 tolerated(0.69) benign(0.007) TCGA-2W-A8YY-01 16 50341006 50341006 G A ADCY7 Missense_Mutation p.A600T 0.31 tolerated(0.17) possibly_damaging(0.748) TCGA-2W-A8YY-01 16 5050739 5050739 C T SEC14L5 Missense_Mutation p.R352W 0.40 deleterious(0.02) benign(0.052) TCGA-2W-A8YY-01 16 50707693 50707693 G T SNX20 Missense_Mutation p.A192D 0.43 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 50744508 50744508 C T NOD2 Missense_Mutation p.T229M 0.25 tolerated(0.12) benign(0.063) TCGA-2W-A8YY-01 16 50750851 50750851 C T NOD2 Missense_Mutation p.L866F 0.39 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 5077289 5077289 G A NAGPA Silent p.S422S 0.37 TCGA-2W-A8YY-01 16 5078187 5078187 C T NAGPA Splice_Site p.X307_splice 0.34 TCGA-2W-A8YY-01 16 50810100 50810100 G A CYLD Silent p.T311T 0.39 TCGA-2W-A8YY-01 16 5106088 5106088 G A C16orf89 Silent p.Y243Y 0.33 TCGA-2W-A8YY-01 16 51171162 51171162 G A SALL1 Missense_Mutation p.T1279M 0.19 deleterious(0.03) probably_damaging(0.962) TCGA-2W-A8YY-01 16 51172990 51172990 A G SALL1 Missense_Mutation p.M1048T 0.29 deleterious(0.01) benign(0.131) TCGA-2W-A8YY-01 16 51173736 51173736 G A SALL1 Silent p.P799P 0.55 TCGA-2W-A8YY-01 16 51173739 51173739 G A SALL1 Silent p.V798V 0.24 TCGA-2W-A8YY-01 16 51175542 51175542 G A SALL1 Silent p.I197I 0.47 TCGA-2W-A8YY-01 16 51176034 51176034 C T SALL1 Silent p.P33P 0.31 TCGA-2W-A8YY-01 16 5123019 5123019 G T ALG1 Missense_Mutation p.Q92H 0.33 deleterious(0.04) benign(0.009) TCGA-2W-A8YY-01 16 5127506 5127506 A G ALG1 Silent p.R200R 0.10 TCGA-2W-A8YY-01 16 5127518 5127518 G A ALG1 Silent p.A204A 0.21 TCGA-2W-A8YY-01 16 5135024 5135024 G T FAM86A 3'UTR 0.51 TCGA-2W-A8YY-01 16 5135476 5135476 G A FAM86A 3'UTR 0.30 TCGA-2W-A8YY-01 16 52472252 52472252 G A TOX3 3'UTR 0.36 TCGA-2W-A8YY-01 16 52472412 52472412 A G TOX3 3'UTR 0.31 TCGA-2W-A8YY-01 16 52553420 52553420 A G TOX3 Intron 0.37 TCGA-2W-A8YY-01 16 53190576 53190576 C T CHD9 Missense_Mutation p.S192F 0.31 possibly_damaging(0.642) TCGA-2W-A8YY-01 16 53269193 53269193 T G CHD9 Missense_Mutation p.W870G 0.53 probably_damaging(0.999) TCGA-2W-A8YY-01 16 53326775 53326775 A G CHD9 Missense_Mutation p.Y1774C 0.54 probably_damaging(0.973) TCGA-2W-A8YY-01 16 53348747 53348747 T G CHD9 Missense_Mutation p.L2443V 0.11 unknown(0) TCGA-2W-A8YY-01 16 53360037 53360037 C A CHD9 3'UTR 0.08 TCGA-2W-A8YY-01 16 53361109 53361109 A G CHD9 3'UTR 0.34 TCGA-2W-A8YY-01 16 53526658 53526658 G A AKTIP Missense_Mutation p.P240S 0.45 tolerated(0.17) benign(0.007) TCGA-2W-A8YY-01 16 53720403 53720403 C T RPGRIP1L Missense_Mutation p.E240K 0.40 tolerated(0.07) possibly_damaging(0.566) TCGA-2W-A8YY-01 16 53913822 53913822 G A FTO Missense_Mutation p.D348N 0.45 tolerated(0.11) benign(0.004) TCGA-2W-A8YY-01 16 54966468 54966468 C T IRX5 Missense_Mutation p.A103V 0.44 deleterious(0) possibly_damaging(0.619) TCGA-2W-A8YY-01 16 54967380 54967380 C T IRX5 Silent p.D349D 0.14 TCGA-2W-A8YY-01 16 54968098 54968098 C T IRX5 3'UTR 0.11 TCGA-2W-A8YY-01 16 55358887 55358887 C T IRX6 5'UTR 0.56 TCGA-2W-A8YY-01 16 55360349 55360349 C T IRX6 Silent p.C49C 0.29 TCGA-2W-A8YY-01 16 55601019 55601019 C T CAPNS2 Silent p.D117D 0.56 TCGA-2W-A8YY-01 16 55727974 55727974 G A SLC6A2 Missense_Mutation p.G324E 0.12 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 16 55734099 55734099 G A SLC6A2 Missense_Mutation p.D547N 0.42 tolerated(0.32) benign(0.014) TCGA-2W-A8YY-01 16 56390120 56390120 C T RP11-441F2.5 5'Flank 0.37 TCGA-2W-A8YY-01 16 56423276 56423276 C T AMFR Missense_Mutation p.R366H 0.38 deleterious(0) possibly_damaging(0.686) TCGA-2W-A8YY-01 16 56540049 56540049 G T BBS2 Silent p.R234R 0.44 TCGA-2W-A8YY-01 16 56652541 56652541 C T MT1L RNA 0.29 TCGA-2W-A8YY-01 16 56669924 56669924 T C MT1M 3'Flank 0.39 TCGA-2W-A8YY-01 16 56672671 56672671 C T MT1A Silent p.C7C 0.39 TCGA-2W-A8YY-01 16 56673953 56673953 T - MT1A 3'UTR 0.30 TCGA-2W-A8YY-01 16 56857737 56857737 C T NUP93 Missense_Mutation p.A258V 0.41 deleterious(0.01) probably_damaging(0.927) TCGA-2W-A8YY-01 16 56864599 56864599 T C NUP93 Splice_Site p.X362_splice 0.29 TCGA-2W-A8YY-01 16 56865835 56865835 C T NUP93 Silent p.A389A 0.41 TCGA-2W-A8YY-01 16 56868102 56868102 C A NUP93 Missense_Mutation p.L534M 0.38 tolerated(0.25) benign(0.244) TCGA-2W-A8YY-01 16 56913052 56913052 C T SLC12A3 Silent p.C416C 0.44 TCGA-2W-A8YY-01 16 56976088 56976088 A C HERPUD1 Missense_Mutation p.N317T 0.26 tolerated(0.17) benign(0.129) TCGA-2W-A8YY-01 16 57063916 57063916 C T NLRC5 Silent p.S779S 0.32 TCGA-2W-A8YY-01 16 57068127 57068127 C T NLRC5 Missense_Mutation p.A864V 0.37 deleterious(0.03) benign(0.022) TCGA-2W-A8YY-01 16 57115026 57115026 C A NLRC5 Missense_Mutation p.L1780I 0.31 deleterious(0.03) probably_damaging(0.954) TCGA-2W-A8YY-01 16 57158331 57158331 G A CPNE2 Intron 0.40 TCGA-2W-A8YY-01 16 57181531 57181531 G A CPNE2 Silent p.K536K 0.18 TCGA-2W-A8YY-01 16 57186676 57186676 C T FAM192A 3'UTR 0.44 TCGA-2W-A8YY-01 16 57220496 57220496 C T RSPRY1 5'UTR 0.36 TCGA-2W-A8YY-01 16 57416473 57416473 G A CX3CL1 Silent p.P241P 0.26 TCGA-2W-A8YY-01 16 57449694 57449694 G A CCL17 Missense_Mutation p.G69D 0.23 tolerated(0.21) benign(0.376) TCGA-2W-A8YY-01 16 57503154 57503154 G A POLR2C Silent p.T112T 0.14 TCGA-2W-A8YY-01 16 57509424 57509424 C T DOK4 Missense_Mutation p.D95N 0.38 deleterious(0) benign(0.435) TCGA-2W-A8YY-01 16 57559919 57559919 G A CCDC102A Missense_Mutation p.R236W 0.36 deleterious(0) benign(0.006) TCGA-2W-A8YY-01 16 57559921 57559921 C T CCDC102A Missense_Mutation p.S235N 0.24 tolerated(0.47) benign(0.003) TCGA-2W-A8YY-01 16 57608834 57608834 G A GPR114 Missense_Mutation p.R439H 0.08 tolerated(0.13) benign(0.11) TCGA-2W-A8YY-01 16 57693375 57693375 C T GPR56 Missense_Mutation p.A452V 0.69 deleterious(0) possibly_damaging(0.892) TCGA-2W-A8YY-01 16 57693581 57693581 G A GPR56 Missense_Mutation p.A521T 0.31 deleterious(0.04) benign(0.015) TCGA-2W-A8YY-01 16 57694721 57694721 G A GPR56 Missense_Mutation p.V539M 0.09 tolerated(0.24) benign(0.152) TCGA-2W-A8YY-01 16 57697363 57697363 G T GPR56 Splice_Site p.X651_splice 0.38 TCGA-2W-A8YY-01 16 57714469 57714469 C T GPR97 Missense_Mutation p.A274V 0.47 tolerated(0.26) benign(0.277) TCGA-2W-A8YY-01 16 57758666 57758666 C A CCDC135 Silent p.L559L 0.45 TCGA-2W-A8YY-01 16 57787136 57787136 C T KATNB1 Missense_Mutation p.R335C 0.24 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 16 57794830 57794830 G A KIFC3 Silent p.R680R 0.41 TCGA-2W-A8YY-01 16 57805499 57805499 G A KIFC3 Missense_Mutation p.R161C 0.36 tolerated(0.06) benign(0.006) TCGA-2W-A8YY-01 16 57822552 57822552 G A KIFC3 Intron 0.34 TCGA-2W-A8YY-01 16 58018568 58018568 G A TEPP Missense_Mutation p.R160H 0.38 tolerated(0.14) benign(0.023) TCGA-2W-A8YY-01 16 58018644 58018644 C T TEPP Silent p.R185R 0.39 TCGA-2W-A8YY-01 16 58030663 58030663 G A ZNF319 Missense_Mutation p.R503W 0.50 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 58032066 58032066 G A ZNF319 Missense_Mutation p.T35M 0.35 deleterious(0.03) benign(0.019) TCGA-2W-A8YY-01 16 58076195 58076195 G A MMP15 Missense_Mutation p.G409R 0.38 deleterious(0.02) benign(0.068) TCGA-2W-A8YY-01 16 58078951 58078951 C T MMP15 Silent p.F537F 0.46 TCGA-2W-A8YY-01 16 58079385 58079385 C T MMP15 3'UTR 0.44 TCGA-2W-A8YY-01 16 58080423 58080423 G A MMP15 3'UTR 0.35 TCGA-2W-A8YY-01 16 58080663 58080663 G A MMP15 3'UTR 0.34 TCGA-2W-A8YY-01 16 58313614 58313614 G A CCDC113 Missense_Mutation p.R356H 0.36 tolerated(0.05) benign(0.197) TCGA-2W-A8YY-01 16 58528900 58528900 C G NDRG4 Missense_Mutation p.D55E 0.26 tolerated(0.22) benign(0.008) TCGA-2W-A8YY-01 16 58545894 58545894 G A NDRG4 3'UTR 0.37 TCGA-2W-A8YY-01 16 58550170 58550170 G A SETD6 Silent p.L133L 0.41 TCGA-2W-A8YY-01 16 58554859 58554859 C T CNOT1 3'UTR 0.32 TCGA-2W-A8YY-01 16 58580382 58580382 G A CNOT1 Silent p.I1283I 0.08 TCGA-2W-A8YY-01 16 58587733 58587733 A T CNOT1 Missense_Mutation p.L975M 0.24 deleterious(0.01) possibly_damaging(0.809) TCGA-2W-A8YY-01 16 58615308 58615308 C A CNOT1 Missense_Mutation p.G386C 0.46 deleterious(0.02) possibly_damaging(0.706) TCGA-2W-A8YY-01 16 58621723 58621723 C T CNOT1 Silent p.T90T 0.36 TCGA-2W-A8YY-01 16 58705075 58705075 G A SLC38A7 Missense_Mutation p.R369W 0.38 tolerated(0.19) probably_damaging(0.997) TCGA-2W-A8YY-01 16 58705078 58705078 G A SLC38A7 Missense_Mutation p.R368W 0.37 tolerated(0.25) probably_damaging(0.994) TCGA-2W-A8YY-01 16 58711316 58711316 G A SLC38A7 Silent p.V208V 0.26 TCGA-2W-A8YY-01 16 58712681 58712681 G A SLC38A7 Silent p.L130L 0.29 TCGA-2W-A8YY-01 16 58712707 58712707 G A SLC38A7 Missense_Mutation p.A121V 0.30 tolerated(0.28) benign(0.116) TCGA-2W-A8YY-01 16 58713930 58713930 G A SLC38A7 Missense_Mutation p.A34V 0.47 tolerated(0.39) benign(0) TCGA-2W-A8YY-01 16 596989 596989 G A CAPN15 Missense_Mutation p.A51T 0.26 tolerated_low_confidence(0.36) benign(0.007) TCGA-2W-A8YY-01 16 599752 599752 G A CAPN15 Silent p.A660A 0.31 TCGA-2W-A8YY-01 16 601650 601650 C T CAPN15 Silent p.Y777Y 0.39 TCGA-2W-A8YY-01 16 61687687 61687687 T C CDH8 Missense_Mutation p.D742G 0.37 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 16 61760919 61760919 C T CDH8 Intron 0.39 TCGA-2W-A8YY-01 16 61935315 61935315 A C CDH8 Silent p.A105A 0.27 TCGA-2W-A8YY-01 16 626108 626108 C T PIGQ Intron 0.38 TCGA-2W-A8YY-01 16 632923 632923 G A PIGQ Silent p.P524P 0.38 TCGA-2W-A8YY-01 16 65006824 65006824 A G CDH11 Missense_Mutation p.V458A 0.33 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 16 66424451 66424451 G A CDH5 Silent p.E309E 0.41 TCGA-2W-A8YY-01 16 66583925 66583925 G T TK2 Missense_Mutation p.L14M 0.44 tolerated_low_confidence(0.05) possibly_damaging(0.779) TCGA-2W-A8YY-01 16 66643390 66643390 C T CMTM3 Missense_Mutation p.T119M 0.36 tolerated(0.21) probably_damaging(0.991) TCGA-2W-A8YY-01 16 66755497 66755497 C A DYNC1LI2 3'UTR 0.35 TCGA-2W-A8YY-01 16 66785182 66785182 C T DYNC1LI2 Missense_Mutation p.V59I 0.45 tolerated(0.07) benign(0.009) TCGA-2W-A8YY-01 16 66820137 66820137 C T CCDC79 Missense_Mutation p.R151Q 0.42 tolerated(1) benign(0) TCGA-2W-A8YY-01 16 66842466 66842466 G A NAE1 Missense_Mutation p.R430W 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 66887482 66887482 C T CA7 3'UTR 0.34 TCGA-2W-A8YY-01 16 66956094 66956094 C T RRAD Missense_Mutation p.R271Q 0.25 deleterious(0.02) probably_damaging(0.941) TCGA-2W-A8YY-01 16 66957488 66957488 C T RRAD Missense_Mutation p.D194N 0.47 tolerated(0.07) benign(0.157) TCGA-2W-A8YY-01 16 67132838 67132838 T C CBFB 3'UTR 0.30 TCGA-2W-A8YY-01 16 67183209 67183209 C T B3GNT9 Missense_Mutation p.A394T 0.37 tolerated(0.81) benign(0.019) TCGA-2W-A8YY-01 16 67183841 67183841 C T B3GNT9 Missense_Mutation p.R183Q 0.41 tolerated(0.39) benign(0.017) TCGA-2W-A8YY-01 16 67183893 67183893 C T B3GNT9 Missense_Mutation p.G166R 0.42 tolerated(0.21) benign(0.013) TCGA-2W-A8YY-01 16 67183995 67183995 G A B3GNT9 Missense_Mutation p.R132C 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 67201791 67201791 C T HSF4 Silent p.P341P 0.39 TCGA-2W-A8YY-01 16 67222961 67222961 C T EXOC3L1 Missense_Mutation p.E57K 0.20 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 67227044 67227044 G A E2F4 Silent p.R126R 0.37 TCGA-2W-A8YY-01 16 67228323 67228323 G A E2F4 Silent p.R158R 0.50 TCGA-2W-A8YY-01 16 67267996 67267996 G T FHOD1 Missense_Mutation p.P537H 0.28 deleterious(0.02) possibly_damaging(0.606) TCGA-2W-A8YY-01 16 67296265 67296265 G A SLC9A5 Intron 0.25 TCGA-2W-A8YY-01 16 67305361 67305361 G T SLC9A5 3'UTR 0.16 TCGA-2W-A8YY-01 16 67314354 67314354 C T PLEKHG4 Missense_Mutation p.A136V 0.28 tolerated(0.58) benign(0.001) TCGA-2W-A8YY-01 16 67316159 67316159 C T PLEKHG4 Missense_Mutation p.S387L 0.41 deleterious(0) benign(0.217) TCGA-2W-A8YY-01 16 67319380 67319380 C T PLEKHG4 Missense_Mutation p.R795C 0.51 deleterious(0) possibly_damaging(0.901) TCGA-2W-A8YY-01 16 67320731 67320731 G A PLEKHG4 Missense_Mutation p.R945H 0.48 tolerated(0.94) benign(0.115) TCGA-2W-A8YY-01 16 67322249 67322249 C T PLEKHG4 Missense_Mutation p.P1134S 0.65 tolerated(0.49) benign(0.002) TCGA-2W-A8YY-01 16 67424177 67424177 T G TPPP3 Missense_Mutation p.K144T 0.47 deleterious(0) possibly_damaging(0.768) TCGA-2W-A8YY-01 16 67440152 67440152 C T ZDHHC1 Missense_Mutation p.G68E 0.42 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 16 67471215 67471215 A G HSD11B2 3'UTR 0.28 TCGA-2W-A8YY-01 16 67478544 67478544 G A ATP6V0D1 Missense_Mutation p.A123V 0.29 tolerated(0.14) benign(0.063) TCGA-2W-A8YY-01 16 67578324 67578324 G A FAM65A Missense_Mutation p.R928H 0.39 tolerated(0.32) benign(0.031) TCGA-2W-A8YY-01 16 676049 676049 G A RAB40C Missense_Mutation p.E165K 0.25 tolerated(0.06) probably_damaging(0.988) TCGA-2W-A8YY-01 16 67662413 67662413 G A CTCF Silent p.A553A 0.48 TCGA-2W-A8YY-01 16 67683860 67683860 G A RLTPR Missense_Mutation p.A691T 0.50 deleterious(0.01) possibly_damaging(0.674) TCGA-2W-A8YY-01 16 67688297 67688297 G A RLTPR Missense_Mutation p.R1095Q 0.50 deleterious(0.01) probably_damaging(0.99) TCGA-2W-A8YY-01 16 67695886 67695886 G A PARD6A Missense_Mutation p.R126H 0.38 deleterious(0.01) probably_damaging(0.962) TCGA-2W-A8YY-01 16 67709762 67709762 T C GFOD2 Missense_Mutation p.I152V 0.54 tolerated(1) benign(0) TCGA-2W-A8YY-01 16 67859941 67859941 G A TSNAXIP1 Missense_Mutation p.R315H 0.38 tolerated(0.24) benign(0.077) TCGA-2W-A8YY-01 16 67860601 67860601 A G TSNAXIP1 Missense_Mutation p.T416A 0.42 tolerated(0.25) benign(0.02) TCGA-2W-A8YY-01 16 67913572 67913572 C T EDC4 Silent p.I572I 0.50 TCGA-2W-A8YY-01 16 67917844 67917844 C - EDC4 Intron 0.24 TCGA-2W-A8YY-01 16 67917918 67917918 T C EDC4 Missense_Mutation p.M1358T 0.45 deleterious(0.01) possibly_damaging(0.796) TCGA-2W-A8YY-01 16 67919696 67919696 G A NRN1L Missense_Mutation p.E51K 0.29 tolerated(0.16) benign(0.163) TCGA-2W-A8YY-01 16 67920119 67920119 C T NRN1L Missense_Mutation p.A152V 0.31 tolerated(0.51) unknown(0) TCGA-2W-A8YY-01 16 67961406 67961406 C T PSKH1 Missense_Mutation p.A379V 0.30 tolerated(0.11) benign(0.265) TCGA-2W-A8YY-01 16 67981583 67981583 G A SLC12A4 Silent p.I654I 0.42 TCGA-2W-A8YY-01 16 68014079 68014079 G A DPEP3 Missense_Mutation p.L94F 0.35 tolerated(0.25) benign(0.091) TCGA-2W-A8YY-01 16 68056576 68056576 C T DDX28 Missense_Mutation p.G177D 0.29 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 16 68112356 68112356 C T DUS2 Silent p.R393R 0.37 TCGA-2W-A8YY-01 16 68156094 68156094 C T NFATC3 Missense_Mutation p.P103L 0.31 deleterious(0.02) benign(0.002) TCGA-2W-A8YY-01 16 68160443 68160443 G A NFATC3 Missense_Mutation p.R444Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 68225289 68225289 C T NFATC3 Missense_Mutation p.P906L 0.50 tolerated_low_confidence(0.09) benign(0.001) TCGA-2W-A8YY-01 16 68293061 68293061 G A PLA2G15 Missense_Mutation p.R247Q 0.22 tolerated(0.24) probably_damaging(0.948) TCGA-2W-A8YY-01 16 68294328 68294328 C T PLA2G15 3'UTR 0.55 TCGA-2W-A8YY-01 16 68328627 68328627 C T SLC7A6 Missense_Mutation p.R348W 0.37 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 68386168 68386168 C T PRMT7 Silent p.G477G 0.35 TCGA-2W-A8YY-01 16 68729723 68729723 C T CDH3 Missense_Mutation p.P726L 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 68846059 68846059 G A CDH1 Missense_Mutation p.V344M 0.42 tolerated(0.07) benign(0.171) TCGA-2W-A8YY-01 16 68846136 68846136 C T CDH1 Silent p.N369N 0.36 TCGA-2W-A8YY-01 16 68849513 68849513 C T CDH1 Silent p.T472T 0.29 TCGA-2W-A8YY-01 16 68849 68849 C T WASH4P 5'UTR 0.10 TCGA-2W-A8YY-01 16 69143390 69143390 C T HAS3 Missense_Mutation p.T31M 0.26 tolerated(0.24) benign(0.066) TCGA-2W-A8YY-01 16 69143425 69143425 C A HAS3 Missense_Mutation p.L43M 0.40 tolerated(0.08) benign(0.133) TCGA-2W-A8YY-01 16 69150007 69150007 G T HAS3 3'UTR 0.36 TCGA-2W-A8YY-01 16 69345413 69345413 A C VPS4A 5'UTR 0.37 TCGA-2W-A8YY-01 16 69354156 69354156 C T VPS4A Missense_Mutation p.R245W 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 69355046 69355046 C T VPS4A Missense_Mutation p.T315M 0.31 deleterious(0) benign(0.112) TCGA-2W-A8YY-01 16 69369085 69369085 C T COG8 Missense_Mutation p.R251Q 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 69373160 69373160 C T COG8 Missense_Mutation p.R99H 0.15 tolerated(0.12) benign(0.009) TCGA-2W-A8YY-01 16 69373390 69373390 C T COG8 Silent p.E22E 0.48 TCGA-2W-A8YY-01 16 69406198 69406199 - T TERF2 Frame_Shift_Ins p.H181Tfs*14 0.30 TCGA-2W-A8YY-01 16 69727146 69727146 A G NFAT5 Missense_Mutation p.T1140A 0.53 benign(0.001) TCGA-2W-A8YY-01 16 69727853 69727853 G T NFAT5 Missense_Mutation p.Q1375H 0.31 probably_damaging(0.993) TCGA-2W-A8YY-01 16 69730705 69730705 C T NFAT5 3'UTR 0.48 TCGA-2W-A8YY-01 16 69731737 69731737 T C NFAT5 3'UTR 0.45 TCGA-2W-A8YY-01 16 69732213 69732213 C T NFAT5 3'UTR 0.13 TCGA-2W-A8YY-01 16 69732290 69732290 T C NFAT5 3'UTR 0.32 TCGA-2W-A8YY-01 16 69737247 69737247 T A NFAT5 3'UTR 0.27 TCGA-2W-A8YY-01 16 69738081 69738081 G A NFAT5 3'UTR 0.47 TCGA-2W-A8YY-01 16 698303 698303 C T FAM195A 3'UTR 0.33 TCGA-2W-A8YY-01 16 69833190 69833190 G A WWP2 Missense_Mutation p.G111E 0.43 tolerated(0.23) benign(0.024) TCGA-2W-A8YY-01 16 69975357 69975357 G A WWP2 3'UTR 0.43 TCGA-2W-A8YY-01 16 69975509 69975509 C T WWP2 3'UTR 0.33 TCGA-2W-A8YY-01 16 70016313 70016313 A G PDXDC2P RNA 0.35 TCGA-2W-A8YY-01 16 70020324 70020324 C T PDXDC2P RNA 0.37 TCGA-2W-A8YY-01 16 70030011 70030011 G A PDXDC2P RNA 0.37 TCGA-2W-A8YY-01 16 70177537 70177537 G A PDPR Missense_Mutation p.S577N 0.16 deleterious(0.02) probably_damaging(0.993) TCGA-2W-A8YY-01 16 70191824 70191824 G A PDPR 3'UTR 0.25 TCGA-2W-A8YY-01 16 70219844 70219844 G A CLEC18C Missense_Mutation p.R423H 0.43 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-2W-A8YY-01 16 702509 702509 G A WDR90 Missense_Mutation p.G366S 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 70286473 70286473 C T AARS 3'UTR 0.50 TCGA-2W-A8YY-01 16 70287690 70287690 G A AARS Missense_Mutation p.T845M 0.34 deleterious(0.03) benign(0.086) TCGA-2W-A8YY-01 16 70292010 70292010 G T AARS Silent p.V701V 0.36 TCGA-2W-A8YY-01 16 70367522 70367522 G A DDX19B 3'UTR 0.34 TCGA-2W-A8YY-01 16 705050 705050 G A WDR90 Missense_Mutation p.G487S 0.31 tolerated(0.75) benign(0.005) TCGA-2W-A8YY-01 16 70513200 70513200 T C FUK Missense_Mutation p.V1016A 0.12 tolerated(0.12) benign(0.052) TCGA-2W-A8YY-01 16 70590179 70590179 G A SF3B3 Missense_Mutation p.R603H 0.32 tolerated(0.08) possibly_damaging(0.832) TCGA-2W-A8YY-01 16 70595608 70595608 G A SF3B3 Missense_Mutation p.E737K 0.47 tolerated(0.07) benign(0.361) TCGA-2W-A8YY-01 16 70606112 70606112 C T SF3B3 3'UTR 0.42 TCGA-2W-A8YY-01 16 706307 706307 G A WDR90 Missense_Mutation p.E658K 0.18 deleterious(0) benign(0.269) TCGA-2W-A8YY-01 16 706391 706391 G A WDR90 Missense_Mutation p.D686N 0.27 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 16 70893975 70893975 G A HYDIN Missense_Mutation p.A4042V 0.44 benign(0.019) TCGA-2W-A8YY-01 16 70906025 70906025 G A HYDIN Missense_Mutation p.A3669V 0.48 benign(0) TCGA-2W-A8YY-01 16 71004455 71004455 C A HYDIN Nonsense_Mutation p.E1863* 0.28 TCGA-2W-A8YY-01 16 71008110 71008110 G A HYDIN Missense_Mutation p.P1668L 0.22 possibly_damaging(0.752) TCGA-2W-A8YY-01 16 71012868 71012868 G A HYDIN Silent p.L1529L 0.33 TCGA-2W-A8YY-01 16 71212932 71212932 C T HYDIN Missense_Mutation p.D94N 0.37 probably_damaging(0.981) TCGA-2W-A8YY-01 16 71318271 71318272 - T CMTR2 Frame_Shift_Ins p.T518Nfs*3 0.37 TCGA-2W-A8YY-01 16 71488014 71488014 G T ZNF23 5'UTR 0.08 TCGA-2W-A8YY-01 16 71610134 71610134 T C TAT Missense_Mutation p.N62S 0.49 tolerated(1) benign(0) TCGA-2W-A8YY-01 16 716744 716744 C T WDR90 Silent p.G1652G 0.29 TCGA-2W-A8YY-01 16 71681852 71681852 C T PHLPP2 3'UTR 0.33 TCGA-2W-A8YY-01 16 71692653 71692653 G T PHLPP2 Missense_Mutation p.P684H 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 716958 716958 C T WDR90 Silent p.P1686P 0.45 TCGA-2W-A8YY-01 16 71763434 71763434 T G AP1G1 3'Flank 0.35 TCGA-2W-A8YY-01 16 71765177 71765177 C T AP1G1 3'Flank 0.39 TCGA-2W-A8YY-01 16 71783877 71783877 C T AP1G1 Missense_Mutation p.V476I 0.24 tolerated(0.08) benign(0.1) TCGA-2W-A8YY-01 16 71884658 71884658 C T ATXN1L Missense_Mutation p.R339W 0.40 deleterious(0) possibly_damaging(0.482) TCGA-2W-A8YY-01 16 71884754 71884754 G A ATXN1L Missense_Mutation p.D371N 0.55 tolerated(0.15) benign(0.01) TCGA-2W-A8YY-01 16 71884772 71884772 C T ATXN1L Nonsense_Mutation p.R377* 0.40 TCGA-2W-A8YY-01 16 71885127 71885127 G A ATXN1L Missense_Mutation p.R495H 0.42 tolerated(0.05) benign(0.028) TCGA-2W-A8YY-01 16 71887156 71887156 C T ATXN1L 3'UTR 0.35 TCGA-2W-A8YY-01 16 71887884 71887884 C A ATXN1L 3'UTR 0.41 TCGA-2W-A8YY-01 16 71962492 71962492 C T IST1 3'Flank 0.34 TCGA-2W-A8YY-01 16 71967387 71967387 C T RP11-498D10.6 3'Flank 0.42 TCGA-2W-A8YY-01 16 72032222 72032222 A G PKD1L3 RNA 0.12 TCGA-2W-A8YY-01 16 72091318 72091318 A C HP Missense_Mutation p.Q73P 0.31 tolerated(0.17) benign(0.343) TCGA-2W-A8YY-01 16 72094792 72094792 C T HP 3'UTR 0.45 TCGA-2W-A8YY-01 16 72130789 72130789 G A DHX38 Missense_Mutation p.R131H 0.10 deleterious(0.04) possibly_damaging(0.84) TCGA-2W-A8YY-01 16 72137597 72137597 G A DHX38 Silent p.G578G 0.46 TCGA-2W-A8YY-01 16 72141386 72141386 G A DHX38 Silent p.P916P 0.32 TCGA-2W-A8YY-01 16 72141565 72141565 G A DHX38 Missense_Mutation p.R944Q 0.09 tolerated(0.05) probably_damaging(0.937) TCGA-2W-A8YY-01 16 72164464 72164464 G T PMFBP1 Silent p.S535S 0.38 TCGA-2W-A8YY-01 16 72184664 72184664 G A PMFBP1 Missense_Mutation p.A160V 0.46 deleterious(0.04) probably_damaging(0.997) TCGA-2W-A8YY-01 16 72818396 72818396 C A ZFHX3 3'UTR 0.11 TCGA-2W-A8YY-01 16 72822687 72822687 C T ZFHX3 Missense_Mutation p.G3163D 0.30 unknown(0) TCGA-2W-A8YY-01 16 728226 728226 G A RHBDL1 3'UTR 0.25 TCGA-2W-A8YY-01 16 72827538 72827538 T G ZFHX3 Missense_Mutation p.N3015H 0.34 unknown(0) TCGA-2W-A8YY-01 16 72827673 72827673 T C ZFHX3 Missense_Mutation p.T2970A 0.22 unknown(0) TCGA-2W-A8YY-01 16 72827695 72827695 C A ZFHX3 Missense_Mutation p.K2962N 0.11 unknown(0) TCGA-2W-A8YY-01 16 72829120 72829120 C T ZFHX3 Silent p.A2487A 0.23 TCGA-2W-A8YY-01 16 72829797 72829797 C T ZFHX3 Missense_Mutation p.D2262N 0.57 probably_damaging(0.995) TCGA-2W-A8YY-01 16 72829895 72829895 G - ZFHX3 Frame_Shift_Del p.P2229Lfs*26 0.45 TCGA-2W-A8YY-01 16 72829973 72829973 C T ZFHX3 Missense_Mutation p.R2203H 0.30 probably_damaging(0.992) TCGA-2W-A8YY-01 16 72830690 72830690 T G ZFHX3 Missense_Mutation p.K1964T 0.44 probably_damaging(0.968) TCGA-2W-A8YY-01 16 72830878 72830878 G A ZFHX3 Silent p.G1901G 0.34 TCGA-2W-A8YY-01 16 72830931 72830931 C A ZFHX3 Nonsense_Mutation p.E1884* 0.41 TCGA-2W-A8YY-01 16 72923628 72923628 A G ZFHX3 Splice_Site p.X1150_splice 0.38 TCGA-2W-A8YY-01 16 72991734 72991734 C T ZFHX3 Missense_Mutation p.G771R 0.46 probably_damaging(0.91) TCGA-2W-A8YY-01 16 73127035 73127035 C T HCCAT5 RNA 0.21 TCGA-2W-A8YY-01 16 731491 731491 G A STUB1 Missense_Mutation p.A138T 0.36 tolerated(0.15) possibly_damaging(0.578) TCGA-2W-A8YY-01 16 731835 731835 C T STUB1 Silent p.D189D 0.29 TCGA-2W-A8YY-01 16 732770 732770 C T JMJD8 3'UTR 0.21 TCGA-2W-A8YY-01 16 735713 735713 G A WDR24 Silent p.D548D 0.08 TCGA-2W-A8YY-01 16 739436 739436 G A WDR24 Missense_Mutation p.R69C 0.22 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 16 74343 74343 C T WASH4P 5'Flank 0.27 TCGA-2W-A8YY-01 16 74442863 74442863 C A CLEC18B 3'UTR 0.29 TCGA-2W-A8YY-01 16 74485916 74485916 A T GLG1 3'UTR 0.08 TCGA-2W-A8YY-01 16 74490588 74490588 G A GLG1 Missense_Mutation p.R1111C 0.49 deleterious(0.01) possibly_damaging(0.862) TCGA-2W-A8YY-01 16 74923670 74923670 G A WDR59 Missense_Mutation p.P709L 0.38 tolerated(0.08) benign(0.233) TCGA-2W-A8YY-01 16 74949768 74949768 C T WDR59 Silent p.E408E 0.21 TCGA-2W-A8YY-01 16 74951882 74951882 G A WDR59 Missense_Mutation p.T304M 0.35 deleterious(0) probably_damaging(0.937) TCGA-2W-A8YY-01 16 75142043 75142043 C T ZNRF1 3'UTR 0.11 TCGA-2W-A8YY-01 16 75147500 75147500 C T LDHD Missense_Mutation p.R363H 0.32 deleterious(0.01) benign(0.276) TCGA-2W-A8YY-01 16 75276519 75276519 G A BCAR1 Missense_Mutation p.A207V 0.34 tolerated(0.15) benign(0.027) TCGA-2W-A8YY-01 16 75512934 75512934 G A CHST6 Missense_Mutation p.R265C 0.36 deleterious(0) possibly_damaging(0.846) TCGA-2W-A8YY-01 16 75563296 75563296 G A CHST5 Silent p.T329T 0.50 TCGA-2W-A8YY-01 16 75563984 75563984 G A CHST5 Missense_Mutation p.T100I 0.46 deleterious(0.03) benign(0.1) TCGA-2W-A8YY-01 16 75579258 75579258 G A TMEM231 Nonsense_Mutation p.R221* 0.43 TCGA-2W-A8YY-01 16 75646354 75646354 G A ADAT1 Missense_Mutation p.A277V 0.48 tolerated(0.25) probably_damaging(0.921) TCGA-2W-A8YY-01 16 75678245 75678245 G A KARS Nonsense_Mutation p.R28* 0.32 TCGA-2W-A8YY-01 16 7645563 7645563 G A RBFOX1 Missense_Mutation p.V181I 0.50 deleterious(0.01) possibly_damaging(0.745) TCGA-2W-A8YY-01 16 7647415 7647415 G A RBFOX1 Missense_Mutation p.V222I 0.27 deleterious(0.03) benign(0.103) TCGA-2W-A8YY-01 16 76569662 76569662 A C CNTNAP4 Silent p.T919T 0.11 TCGA-2W-A8YY-01 16 76572086 76572086 C T CNTNAP4 Silent p.N950N 0.44 TCGA-2W-A8YY-01 16 77353954 77353954 C T ADAMTS18 Missense_Mutation p.R775Q 0.47 tolerated(0.09) benign(0.183) TCGA-2W-A8YY-01 16 77465326 77465326 G C ADAMTS18 Missense_Mutation p.H121D 0.22 tolerated(0.07) benign(0.006) TCGA-2W-A8YY-01 16 774978 774978 C T CCDC78 Missense_Mutation p.G191D 0.26 deleterious(0.04) probably_damaging(0.986) TCGA-2W-A8YY-01 16 7762486 7762486 T C RBFOX1 3'UTR 0.13 TCGA-2W-A8YY-01 16 78065931 78065931 A G CLEC3A 3'UTR 0.28 TCGA-2W-A8YY-01 16 78466547 78466547 G A WWOX Silent p.S318S 0.36 TCGA-2W-A8YY-01 16 80718435 80718435 C T CDYL2 Missense_Mutation p.G206S 0.48 tolerated(0.08) possibly_damaging(0.536) TCGA-2W-A8YY-01 16 81030973 81030973 C T CMC2 Silent p.L9L 0.38 TCGA-2W-A8YY-01 16 81062226 81062226 A C CENPN Intron 0.35 TCGA-2W-A8YY-01 16 81078506 81078506 G A ATMIN Silent p.T801T 0.45 TCGA-2W-A8YY-01 16 81134712 81134712 C T GCSH 5'Flank 0.35 TCGA-2W-A8YY-01 16 81145782 81145782 C G PKD1L2 RNA 0.42 TCGA-2W-A8YY-01 16 81180961 81180961 C A PKD1L2 RNA 0.45 TCGA-2W-A8YY-01 16 81204319 81204319 G T PKD1L2 3'Flank 0.28 TCGA-2W-A8YY-01 16 81301557 81301557 T C BCMO1 Missense_Mutation p.F222L 0.31 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 16 81319192 81319192 C T BCMO1 Nonsense_Mutation p.R419* 0.56 TCGA-2W-A8YY-01 16 81388216 81388216 C T GAN Silent p.D163D 0.35 TCGA-2W-A8YY-01 16 81411319 81411319 C T GAN 3'UTR 0.25 TCGA-2W-A8YY-01 16 81411490 81411490 C T GAN 3'UTR 0.44 TCGA-2W-A8YY-01 16 81411717 81411717 A G GAN 3'UTR 0.62 TCGA-2W-A8YY-01 16 81712103 81712103 G A CMIP Missense_Mutation p.A420T 0.39 tolerated_low_confidence(0.36) benign(0) TCGA-2W-A8YY-01 16 81735348 81735348 C T CMIP Silent p.D613D 0.53 TCGA-2W-A8YY-01 16 81740677 81740677 C T CMIP Silent p.Y752Y 0.50 TCGA-2W-A8YY-01 16 81744109 81744109 T - CMIP 3'UTR 0.31 TCGA-2W-A8YY-01 16 818481 818481 C T MSLN Missense_Mutation p.R575W 0.26 deleterious(0.03) benign(0.064) TCGA-2W-A8YY-01 16 81904527 81904527 A G PLCG2 Missense_Mutation p.E212G 0.31 deleterious(0.01) benign(0.268) TCGA-2W-A8YY-01 16 83214581 83214581 C T CDH13 Intron 0.43 TCGA-2W-A8YY-01 16 84031825 84031825 C T NECAB2 Missense_Mutation p.R289W 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 16 84093018 84093018 C T MBTPS1 Missense_Mutation p.R907Q 0.42 tolerated(0.08) benign(0.178) TCGA-2W-A8YY-01 16 841258 841258 C T CHTF18 Missense_Mutation p.P331L 0.42 tolerated(0.18) benign(0.013) TCGA-2W-A8YY-01 16 84126882 84126882 C T MBTPS1 Missense_Mutation p.V253M 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 84163716 84163716 C T HSDL1 Missense_Mutation p.A181T 0.40 tolerated(0.12) possibly_damaging(0.507) TCGA-2W-A8YY-01 16 84188289 84188289 C T DNAAF1 Missense_Mutation p.R154C 0.46 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 16 84199561 84199561 C T DNAAF1 Intron 0.14 TCGA-2W-A8YY-01 16 84212758 84212758 G A TAF1C Missense_Mutation p.P800L 0.48 deleterious(0.03) benign(0.405) TCGA-2W-A8YY-01 16 84229955 84229955 C T ADAD2 Missense_Mutation p.A584V 0.33 deleterious(0.01) benign(0.209) TCGA-2W-A8YY-01 16 84270329 84270329 C T KCNG4 Intron 0.18 TCGA-2W-A8YY-01 16 843011 843011 G A CHTF18 Missense_Mutation p.A540T 0.27 deleterious(0.04) possibly_damaging(0.677) TCGA-2W-A8YY-01 16 84494120 84494120 C T ATP2C2 Intron 0.09 TCGA-2W-A8YY-01 16 84691070 84691070 G A KLHL36 Silent p.T219T 0.54 TCGA-2W-A8YY-01 16 84695623 84695623 G A KLHL36 Missense_Mutation p.V579I 0.29 tolerated(0.12) benign(0.002) TCGA-2W-A8YY-01 16 84801888 84801888 G A USP10 Missense_Mutation p.R641H 0.35 tolerated(0.25) benign(0.053) TCGA-2W-A8YY-01 16 84872301 84872301 G A CRISPLD2 Missense_Mutation p.R67Q 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 84942900 84942900 G A CRISPLD2 3'UTR 0.28 TCGA-2W-A8YY-01 16 85009364 85009364 G A ZDHHC7 3'Flank 0.35 TCGA-2W-A8YY-01 16 85010116 85010116 G A ZDHHC7 Nonsense_Mutation p.R291* 0.46 TCGA-2W-A8YY-01 16 85667588 85667588 G A GSE1 Missense_Mutation p.V26I 0.26 deleterious(0) unknown(0) TCGA-2W-A8YY-01 16 85667724 85667724 C T GSE1 Missense_Mutation p.A71V 0.58 deleterious(0.01) unknown(0) TCGA-2W-A8YY-01 16 85682307 85682307 A G GSE1 Missense_Mutation p.I126V 0.30 deleterious(0.02) unknown(0) TCGA-2W-A8YY-01 16 85690025 85690025 G A GSE1 Missense_Mutation p.E356K 0.28 tolerated(0.17) unknown(0) TCGA-2W-A8YY-01 16 85694974 85694974 G A GSE1 Silent p.P621P 0.40 TCGA-2W-A8YY-01 16 85697032 85697032 G A GSE1 Missense_Mutation p.R819Q 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 16 85813161 85813161 G A EMC8 3'UTR 0.29 TCGA-2W-A8YY-01 16 85839345 85839345 G A COX4I1 Missense_Mutation p.R83H 0.39 tolerated(0.25) benign(0.032) TCGA-2W-A8YY-01 16 8619742 8619742 C T TMEM114 3'UTR 0.33 TCGA-2W-A8YY-01 16 86544653 86544653 G A FOXF1 Missense_Mutation p.G160R 0.33 deleterious(0.04) benign(0.135) TCGA-2W-A8YY-01 16 86546683 86546683 G A FOXF1 Missense_Mutation p.V378M 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 86585848 86585848 C T MTHFSD Intron 0.28 TCGA-2W-A8YY-01 16 86602449 86602449 G A FOXC2 3'UTR 0.40 TCGA-2W-A8YY-01 16 86614983 86614983 C T FOXL1 3'UTR 0.41 TCGA-2W-A8YY-01 16 87336536 87336536 C A C16orf95 3'UTR 0.41 TCGA-2W-A8YY-01 16 87339389 87339389 G A C16orf95 Missense_Mutation p.R213C 0.40 tolerated(0.08) benign(0) TCGA-2W-A8YY-01 16 87443900 87443900 C A ZCCHC14 Missense_Mutation p.D946Y 0.48 deleterious(0) unknown(0) TCGA-2W-A8YY-01 16 87446059 87446059 G A ZCCHC14 Silent p.S619S 0.35 TCGA-2W-A8YY-01 16 87446353 87446353 C T ZCCHC14 Silent p.A521A 0.48 TCGA-2W-A8YY-01 16 87525430 87525430 C T ZCCHC14 Missense_Mutation p.A2T 0.35 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 16 87678130 87678130 C T JPH3 Missense_Mutation p.R217C 0.36 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 16 87723544 87723544 C T JPH3 Silent p.C526C 0.53 TCGA-2W-A8YY-01 16 87730468 87730468 C A JPH3 3'UTR 0.42 TCGA-2W-A8YY-01 16 87731557 87731557 C T JPH3 3'UTR 0.31 TCGA-2W-A8YY-01 16 87734560 87734560 C T FLJ00104 3'UTR 0.28 TCGA-2W-A8YY-01 16 87735256 87735256 C T FLJ00104 Missense_Mutation p.E289K 0.48 unknown(0) TCGA-2W-A8YY-01 16 87735321 87735321 G A FLJ00104 Missense_Mutation p.A267V 0.44 unknown(0) TCGA-2W-A8YY-01 16 87738589 87738589 C T FLJ00104 5'UTR 0.29 TCGA-2W-A8YY-01 16 87788854 87788854 G A KLHDC4 Silent p.D105D 0.37 TCGA-2W-A8YY-01 16 87871468 87871468 G A SLC7A5 Missense_Mutation p.P375S 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 87873379 87873379 C T SLC7A5 Missense_Mutation p.V290M 0.29 deleterious(0.02) probably_damaging(0.975) TCGA-2W-A8YY-01 16 87885445 87885445 C T SLC7A5 Silent p.T183T 0.37 TCGA-2W-A8YY-01 16 87921721 87921721 T C CA5A 3'UTR 0.40 TCGA-2W-A8YY-01 16 87925408 87925408 G A CA5A Silent p.S257S 0.39 TCGA-2W-A8YY-01 16 88008770 88008770 G T BANP Missense_Mutation p.D17Y 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 88037932 88037932 A G BANP Missense_Mutation p.N124D 0.37 tolerated_low_confidence(0.29) benign(0.046) TCGA-2W-A8YY-01 16 88061236 88061236 C T BANP Missense_Mutation p.S340L 0.36 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-2W-A8YY-01 16 88110402 88110402 C T BANP 3'UTR 0.33 TCGA-2W-A8YY-01 16 88497925 88497925 C A ZNF469 Silent p.I1321I 0.39 TCGA-2W-A8YY-01 16 88499968 88499968 C T ZNF469 Silent p.T2002T 0.41 TCGA-2W-A8YY-01 16 88580859 88580859 G T ZFPM1 Silent p.T111T 0.23 TCGA-2W-A8YY-01 16 88598631 88598631 C T ZFPM1 Missense_Mutation p.R312C 0.39 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 16 8862722 8862722 C T ABAT Silent p.I236I 0.18 TCGA-2W-A8YY-01 16 88688753 88688753 C T ZC3H18 Missense_Mutation p.R542W 0.28 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 16 88697681 88697681 C T ZC3H18 Missense_Mutation p.R946W 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 88705397 88705397 C T IL17C Silent p.P5P 0.54 TCGA-2W-A8YY-01 16 88722620 88722620 C T MVD Missense_Mutation p.G166S 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 88763910 88763910 G A RNF166 3'UTR 0.11 TCGA-2W-A8YY-01 16 88781678 88781678 C T CTU2 3'UTR 0.33 TCGA-2W-A8YY-01 16 88782637 88782637 G A PIEZO1 Silent p.P2366P 0.85 TCGA-2W-A8YY-01 16 88786878 88786878 C T PIEZO1 Missense_Mutation p.R1955H 0.50 tolerated(0.1) possibly_damaging(0.777) TCGA-2W-A8YY-01 16 88786924 88786924 G A PIEZO1 Missense_Mutation p.R1940W 0.11 tolerated(0.2) benign(0.009) TCGA-2W-A8YY-01 16 88791868 88791868 C T PIEZO1 Missense_Mutation p.R1373H 0.13 tolerated(0.2) benign(0.001) TCGA-2W-A8YY-01 16 88792089 88792089 G A PIEZO1 Silent p.G1324G 0.36 TCGA-2W-A8YY-01 16 88792708 88792708 C T PIEZO1 Missense_Mutation p.A1318T 0.28 tolerated(0.16) possibly_damaging(0.74) TCGA-2W-A8YY-01 16 88792984 88792984 A C PIEZO1 Missense_Mutation p.L1256R 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 88798802 88798802 C T PIEZO1 Missense_Mutation p.D978N 0.08 deleterious(0.05) benign(0.282) TCGA-2W-A8YY-01 16 88804736 88804736 G A PIEZO1 Silent p.C249C 0.53 TCGA-2W-A8YY-01 16 88871286 88871286 G T CDT1 Missense_Mutation p.E156D 0.33 tolerated(0.13) benign(0.014) TCGA-2W-A8YY-01 16 88872894 88872894 G T CDT1 Missense_Mutation p.A312S 0.18 tolerated(0.06) benign(0.03) TCGA-2W-A8YY-01 16 88873500 88873500 G A CDT1 Silent p.A388A 0.43 TCGA-2W-A8YY-01 16 88876875 88876875 G A APRT Missense_Mutation p.P93S 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 16 88929865 88929865 G A PABPN1L 3'UTR 0.36 TCGA-2W-A8YY-01 16 88930703 88930703 G A PABPN1L Missense_Mutation p.P247S 0.43 tolerated(0.51) benign(0.005) TCGA-2W-A8YY-01 16 88942001 88942001 C T CBFA2T3 3'UTR 0.40 TCGA-2W-A8YY-01 16 88942682 88942682 A T CBFA2T3 3'UTR 0.50 TCGA-2W-A8YY-01 16 88945739 88945739 G A CBFA2T3 Missense_Mutation p.A534V 0.29 deleterious(0.04) possibly_damaging(0.691) TCGA-2W-A8YY-01 16 89167309 89167309 C T ACSF3 Missense_Mutation p.R74C 0.10 deleterious(0.05) probably_damaging(0.932) TCGA-2W-A8YY-01 16 89294057 89294057 G A ZNF778 Missense_Mutation p.C426Y 0.42 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 16 89334412 89334412 A G ANKRD11 3'UTR 0.38 TCGA-2W-A8YY-01 16 89341577 89341577 G A ANKRD11 Missense_Mutation p.A2498V 0.12 possibly_damaging(0.842) TCGA-2W-A8YY-01 16 89347360 89347360 C T ANKRD11 Missense_Mutation p.A1864T 0.10 benign(0.004) TCGA-2W-A8YY-01 16 89348019 89348019 C T ANKRD11 Missense_Mutation p.G1644E 0.09 benign(0.347) TCGA-2W-A8YY-01 16 89350691 89350691 C T ANKRD11 Silent p.P753P 0.31 TCGA-2W-A8YY-01 16 89351890 89351890 C T ANKRD11 Missense_Mutation p.E354K 0.31 possibly_damaging(0.905) TCGA-2W-A8YY-01 16 89357087 89357087 G A ANKRD11 Missense_Mutation p.R183C 0.30 probably_damaging(0.993) TCGA-2W-A8YY-01 16 8948701 8948701 G T CARHSP1 3'UTR 0.39 TCGA-2W-A8YY-01 16 8948959 8948959 C A CARHSP1 3'UTR 0.11 TCGA-2W-A8YY-01 16 89627403 89627403 C T RPL13 Silent p.P12P 0.61 TCGA-2W-A8YY-01 16 89628158 89628158 C T RPL13 Missense_Mutation p.S140F 0.24 deleterious(0) possibly_damaging(0.447) TCGA-2W-A8YY-01 16 89702763 89702763 G A DPEP1 Missense_Mutation p.R110Q 0.52 tolerated(0.72) benign(0) TCGA-2W-A8YY-01 16 89704369 89704369 C T DPEP1 Missense_Mutation p.A352V 0.36 deleterious(0.04) benign(0.011) TCGA-2W-A8YY-01 16 89735928 89735928 C T SPATA33 3'UTR 0.41 TCGA-2W-A8YY-01 16 89760633 89760633 G A CDK10 Missense_Mutation p.D221N 0.37 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 16 89774864 89774864 G A VPS9D1 Silent p.C591C 0.37 TCGA-2W-A8YY-01 16 89789814 89789814 G A ZNF276 Missense_Mutation p.D235N 0.35 tolerated(0.49) benign(0.01) TCGA-2W-A8YY-01 16 89805287 89805287 T C FANCA Intron 0.70 TCGA-2W-A8YY-01 16 89811396 89811396 C A FANCA Missense_Mutation p.K1199N 0.42 deleterious(0.05) benign(0.403) TCGA-2W-A8YY-01 16 8995007 8995007 C T USP7 Missense_Mutation p.C711Y 0.34 tolerated(0.25) benign(0.184) TCGA-2W-A8YY-01 16 8995080 8995080 A G USP7 Silent p.L687L 0.16 TCGA-2W-A8YY-01 16 89975468 89975468 C A TCF25 Intron 0.29 TCGA-2W-A8YY-01 16 90001799 90001799 G A TUBB3 Missense_Mutation p.A314T 0.08 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-2W-A8YY-01 16 90025468 90025468 G A DEF8 Missense_Mutation p.R201H 0.38 tolerated(0.68) benign(0.105) TCGA-2W-A8YY-01 16 90030592 90030592 G T DEF8 Missense_Mutation p.Q400H 0.36 deleterious(0.04) possibly_damaging(0.838) TCGA-2W-A8YY-01 16 90071354 90071354 G T DBNDD1 3'UTR 0.33 TCGA-2W-A8YY-01 16 9009194 9009194 A G USP7 Missense_Mutation p.I332T 0.48 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 16 90102912 90102912 G A GAS8 Missense_Mutation p.R225H 0.25 tolerated(0.24) possibly_damaging(0.575) TCGA-2W-A8YY-01 16 90109951 90109951 G A GAS8 3'UTR 0.43 TCGA-2W-A8YY-01 16 90124522 90124522 G A PRDM7 3'UTR 0.48 TCGA-2W-A8YY-01 16 90124915 90124915 G A PRDM7 Missense_Mutation p.P421S 0.39 tolerated_low_confidence(0.47) possibly_damaging(0.857) TCGA-2W-A8YY-01 16 90127015 90127015 G A PRDM7 Missense_Mutation p.R323W 0.37 deleterious(0.03) probably_damaging(0.993) TCGA-2W-A8YY-01 16 9196862 9196862 G A C16orf72 Missense_Mutation p.R110Q 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-2W-A8YY-01 16 9210759 9210759 G T C16orf72 Missense_Mutation p.R273I 0.41 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 16 97463 97463 G A POLR3K Silent p.C98C 0.33 TCGA-2W-A8YY-01 16 9856868 9856868 G A GRIN2A 3'UTR 0.42 TCGA-2W-A8YY-01 17 10216067 10216068 - T MYH13 Frame_Shift_Ins p.L1397Tfs*74 0.18 TCGA-2W-A8YY-01 17 10216533 10216533 A G MYH13 Missense_Mutation p.W1375R 0.12 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 10248895 10248895 G A MYH13 Silent p.Y434Y 0.33 TCGA-2W-A8YY-01 17 10296152 10296152 G A MYH8 Missense_Mutation p.A1820V 0.32 tolerated(0.07) benign(0.201) TCGA-2W-A8YY-01 17 10297597 10297597 G A MYH8 Missense_Mutation p.A1712V 0.10 tolerated(0.16) benign(0.019) TCGA-2W-A8YY-01 17 10399305 10399305 G T MYH1 Missense_Mutation p.L1711M 0.29 tolerated(0.15) benign(0.171) TCGA-2W-A8YY-01 17 10416973 10416973 C T MYH1 Missense_Mutation p.G259R 0.38 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 17 10430350 10430350 C A MYH2 Nonsense_Mutation p.E1299* 0.25 TCGA-2W-A8YY-01 17 10542627 10542627 C T MYH3 Silent p.Q1030Q 0.44 TCGA-2W-A8YY-01 17 10545870 10545870 C T MYH3 Silent p.A584A 0.42 TCGA-2W-A8YY-01 17 10549132 10549132 C A MYH3 Nonsense_Mutation p.E345* 0.55 TCGA-2W-A8YY-01 17 10614295 10614295 C A ADPRM Missense_Mutation p.P288H 0.09 tolerated(0.08) benign(0.003) TCGA-2W-A8YY-01 17 10618625 10618625 G A TMEM220 3'UTR 0.53 TCGA-2W-A8YY-01 17 10707201 10707201 G A LINC00675 RNA 0.24 TCGA-2W-A8YY-01 17 10728806 10728806 G A PIRT Missense_Mutation p.R53C 0.42 deleterious(0.03) possibly_damaging(0.855) TCGA-2W-A8YY-01 17 11461933 11461933 C T SHISA6 3'UTR 0.31 TCGA-2W-A8YY-01 17 11568191 11568191 C A DNAH9 Silent p.I879I 0.38 TCGA-2W-A8YY-01 17 11687708 11687708 G A DNAH9 Missense_Mutation p.G2638E 0.11 benign(0.02) TCGA-2W-A8YY-01 17 11757458 11757458 G A DNAH9 Missense_Mutation p.A3216T 0.08 benign(0.033) TCGA-2W-A8YY-01 17 11757691 11757691 C T DNAH9 Silent p.T3293T 0.18 TCGA-2W-A8YY-01 17 11872937 11872937 C T DNAH9 3'UTR 0.43 TCGA-2W-A8YY-01 17 12642597 12642597 G A MYOCD Silent p.Q223Q 0.23 TCGA-2W-A8YY-01 17 1264466 1264466 C T YWHAE Silent p.T166T 0.45 TCGA-2W-A8YY-01 17 12666636 12666636 A C MYOCD Missense_Mutation p.E879A 0.24 deleterious(0) possibly_damaging(0.702) TCGA-2W-A8YY-01 17 12666757 12666757 T G MYOCD Silent p.S919S 0.42 TCGA-2W-A8YY-01 17 12908340 12908340 T C ELAC2 Missense_Mutation p.I317V 0.13 tolerated(0.68) benign(0.005) TCGA-2W-A8YY-01 17 1303503 1303503 C T YWHAE 5'UTR 0.24 TCGA-2W-A8YY-01 17 1326025 1326025 G A CRK 3'UTR 0.50 TCGA-2W-A8YY-01 17 1367864 1367864 C T MYO1C 3'UTR 0.30 TCGA-2W-A8YY-01 17 1421477 1421477 T G PITPNA 3'UTR 0.32 TCGA-2W-A8YY-01 17 14248368 14248368 A C HS3ST3B1 Missense_Mutation p.D193A 0.30 tolerated(0.1) benign(0.002) TCGA-2W-A8YY-01 17 1442245 1442245 A G PITPNA Missense_Mutation p.V125A 0.30 tolerated(0.27) probably_damaging(0.978) TCGA-2W-A8YY-01 17 1478734 1478734 C T SLC43A2 3'UTR 0.33 TCGA-2W-A8YY-01 17 15217464 15217464 T C TEKT3 Missense_Mutation p.H273R 0.31 tolerated(0.13) benign(0.018) TCGA-2W-A8YY-01 17 1538596 1538596 G T SCARF1 Missense_Mutation p.A650D 0.14 tolerated(0.07) possibly_damaging(0.641) TCGA-2W-A8YY-01 17 15406175 15406175 T - TVP23C 3'UTR 0.25 TCGA-2W-A8YY-01 17 15458637 15458637 C T TVP23C-CDRT4 Silent p.A18A 0.41 TCGA-2W-A8YY-01 17 1548968 1548968 C T SCARF1 Silent p.P8P 0.38 TCGA-2W-A8YY-01 17 1549017 1549017 G A SCARF1 5'UTR 0.40 TCGA-2W-A8YY-01 17 15526936 15526936 G A RP11-385D13.1 Missense_Mutation p.R432C 0.15 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-2W-A8YY-01 17 15532509 15532509 G A TRIM16 Missense_Mutation p.A372V 0.24 tolerated(0.13) benign(0.063) TCGA-2W-A8YY-01 17 15620458 15620458 G A ZNF286A Missense_Mutation p.A474T 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 1584844 1584844 G A PRPF8 Missense_Mutation p.T265M 0.08 deleterious(0) probably_damaging(0.981) TCGA-2W-A8YY-01 17 1585166 1585166 C T PRPF8 Missense_Mutation p.A201T 0.31 tolerated(0.11) benign(0.046) TCGA-2W-A8YY-01 17 1585245 1585245 C T PRPF8 Silent p.P174P 0.38 TCGA-2W-A8YY-01 17 15942812 15942812 G A NCOR1 Missense_Mutation p.A2297V 0.26 benign(0.002) TCGA-2W-A8YY-01 17 15943792 15943792 T G NCOR1 Silent p.G2232G 0.47 TCGA-2W-A8YY-01 17 15968195 15968195 G A NCOR1 Missense_Mutation p.S1697F 0.42 probably_damaging(0.996) TCGA-2W-A8YY-01 17 15971278 15971278 G A NCOR1 Silent p.G1557G 0.17 TCGA-2W-A8YY-01 17 15995334 15995334 T C NCOR1 Silent p.P953P 0.29 TCGA-2W-A8YY-01 17 16062121 16062121 C T NCOR1 Missense_Mutation p.E229K 0.30 probably_damaging(0.993) TCGA-2W-A8YY-01 17 1630747 1630747 G A WDR81 Missense_Mutation p.E832K 0.41 tolerated(0.68) benign(0.004) TCGA-2W-A8YY-01 17 16329505 16329505 G A TRPV2 Silent p.S339S 0.29 TCGA-2W-A8YY-01 17 1633673 1633673 G T WDR81 Splice_Site p.X1223_splice 0.13 TCGA-2W-A8YY-01 17 16342483 16342483 C T TRPV2 3'Flank 0.36 TCGA-2W-A8YY-01 17 1640890 1640890 C T WDR81 Missense_Mutation p.R1913C 0.15 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 17 1640930 1640930 G A WDR81 Missense_Mutation p.R1926H 0.12 deleterious(0.03) probably_damaging(0.947) TCGA-2W-A8YY-01 17 16455253 16455253 G A ZNF287 Missense_Mutation p.R735C 0.31 deleterious(0.04) probably_damaging(0.938) TCGA-2W-A8YY-01 17 16455255 16455255 C T ZNF287 Missense_Mutation p.C734Y 0.45 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 16456720 16456720 C T ZNF287 Missense_Mutation p.A246T 0.44 tolerated(0.48) benign(0.001) TCGA-2W-A8YY-01 17 16525989 16525989 T C ZNF624 Silent p.V737V 0.23 TCGA-2W-A8YY-01 17 16527722 16527722 G A ZNF624 Silent p.L160L 0.11 TCGA-2W-A8YY-01 17 16553000 16553000 G T ZNF624 Missense_Mutation p.A20D 0.43 tolerated_low_confidence(0.06) benign(0.18) TCGA-2W-A8YY-01 17 16612234 16612234 A T CCDC144A Missense_Mutation p.K288I 0.13 deleterious(0) possibly_damaging(0.902) TCGA-2W-A8YY-01 17 16612323 16612323 G A CCDC144A Missense_Mutation p.E318K 0.38 tolerated(0.12) possibly_damaging(0.636) TCGA-2W-A8YY-01 17 16612371 16612371 C T CCDC144A Missense_Mutation p.P334S 0.07 tolerated(0.26) possibly_damaging(0.857) TCGA-2W-A8YY-01 17 16612608 16612608 C G CCDC144A Missense_Mutation p.H413D 0.27 deleterious(0.02) possibly_damaging(0.507) TCGA-2W-A8YY-01 17 16703480 16703480 C T CCDC144A 3'UTR 0.26 TCGA-2W-A8YY-01 17 1674380 1674380 G A SERPINF1 Missense_Mutation p.S114N 0.18 tolerated(0.92) benign(0) TCGA-2W-A8YY-01 17 1686739 1686739 C A SMYD4 Missense_Mutation p.Q684H 0.46 tolerated(0.2) benign(0.052) TCGA-2W-A8YY-01 17 1690119 1690119 G A SMYD4 Silent p.C623C 0.32 TCGA-2W-A8YY-01 17 1703698 1703698 G A SMYD4 Silent p.Y330Y 0.24 TCGA-2W-A8YY-01 17 17046886 17046886 C - MPRIP Frame_Shift_Del p.P353Qfs*30 0.14 TCGA-2W-A8YY-01 17 17061824 17061824 G T MPRIP Missense_Mutation p.E518D 0.22 tolerated(0.38) benign(0.004) TCGA-2W-A8YY-01 17 17088781 17088781 C T MPRIP 3'UTR 0.12 TCGA-2W-A8YY-01 17 17150241 17150241 C A COPS3 3'UTR 0.28 TCGA-2W-A8YY-01 17 17394993 17394993 C T MED9 3'UTR 0.42 TCGA-2W-A8YY-01 17 17696565 17696565 C T RAI1 Silent p.G101G 0.49 TCGA-2W-A8YY-01 17 17696594 17696594 G T RAI1 Missense_Mutation p.R111L 0.41 deleterious(0.01) benign(0.041) TCGA-2W-A8YY-01 17 17696746 17696746 G A RAI1 Missense_Mutation p.A162T 0.35 tolerated(0.39) benign(0.003) TCGA-2W-A8YY-01 17 17696934 17696934 C A RAI1 Silent p.S224S 0.28 TCGA-2W-A8YY-01 17 17697075 17697075 G A RAI1 Silent p.S271S 0.47 TCGA-2W-A8YY-01 17 17699620 17699620 G A RAI1 Missense_Mutation p.D1120N 0.30 tolerated(0.58) benign(0.004) TCGA-2W-A8YY-01 17 17701752 17701752 G A RAI1 Silent p.V1830V 0.38 TCGA-2W-A8YY-01 17 17714083 17714083 G A RAI1 3'UTR 0.09 TCGA-2W-A8YY-01 17 17714383 17714383 G A RAI1 3'UTR 0.30 TCGA-2W-A8YY-01 17 17900802 17900802 G A LRRC48 Missense_Mutation p.V285M 0.39 tolerated(0.12) benign(0.001) TCGA-2W-A8YY-01 17 17910824 17910824 G A LRRC48 Intron 0.25 TCGA-2W-A8YY-01 17 17968814 17968814 G A GID4 3'UTR 0.38 TCGA-2W-A8YY-01 17 18001652 18001652 G A DRG2 Silent p.T98T 0.54 TCGA-2W-A8YY-01 17 18022920 18022920 C T MYO15A Missense_Mutation p.P269L 0.36 possibly_damaging(0.882) TCGA-2W-A8YY-01 17 18023604 18023604 T C MYO15A Missense_Mutation p.L497P 0.24 possibly_damaging(0.766) TCGA-2W-A8YY-01 17 18039777 18039777 C T MYO15A Missense_Mutation p.A1548V 0.30 unknown(0) TCGA-2W-A8YY-01 17 18039974 18039974 G A MYO15A Missense_Mutation p.A1585T 0.41 unknown(0) TCGA-2W-A8YY-01 17 18049388 18049388 C T MYO15A Missense_Mutation p.A2159V 0.52 unknown(0) TCGA-2W-A8YY-01 17 18058634 18058634 G A MYO15A Missense_Mutation p.V2783M 0.52 unknown(0) TCGA-2W-A8YY-01 17 18061097 18061097 C T MYO15A Silent p.P2950P 0.42 TCGA-2W-A8YY-01 17 18140990 18140990 G A LLGL1 Missense_Mutation p.A603T 0.38 deleterious(0) possibly_damaging(0.851) TCGA-2W-A8YY-01 17 18141843 18141843 G A LLGL1 Missense_Mutation p.R709H 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 17 18151069 18151069 G A FLII Missense_Mutation p.R797C 0.48 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 18151141 18151141 G A FLII Missense_Mutation p.R773C 0.33 deleterious(0) possibly_damaging(0.893) TCGA-2W-A8YY-01 17 18152162 18152162 T C FLII Missense_Mutation p.Y657C 0.53 deleterious(0.04) probably_damaging(0.923) TCGA-2W-A8YY-01 17 18167268 18167268 G A MIEF2 Silent p.G196G 0.54 TCGA-2W-A8YY-01 17 18181488 18181488 G A TOP3A Silent p.D776D 0.35 TCGA-2W-A8YY-01 17 18285884 18285884 G A EVPLL Missense_Mutation p.R135H 0.16 tolerated(0.3) benign(0.068) TCGA-2W-A8YY-01 17 18315250 18315250 C T RP1-37N7.3 RNA 0.13 TCGA-2W-A8YY-01 17 18430136 18430136 G A FAM106A 5'UTR 0.86 TCGA-2W-A8YY-01 17 18445226 18445226 A G CTD-2303H24.2 RNA 0.31 TCGA-2W-A8YY-01 17 18651273 18651273 A C FBXW10 Silent p.T175T 0.32 TCGA-2W-A8YY-01 17 18880287 18880287 C T SLC5A10 Missense_Mutation p.R323C 0.20 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 18880290 18880290 G A SLC5A10 Missense_Mutation p.A324T 0.13 deleterious(0.05) possibly_damaging(0.49) TCGA-2W-A8YY-01 17 19246947 19246947 C T B9D1 Intron 0.41 TCGA-2W-A8YY-01 17 19247157 19247157 G A B9D1 Missense_Mutation p.R140W 0.55 deleterious(0) probably_damaging(0.952) TCGA-2W-A8YY-01 17 19284024 19284024 C T MAPK7 Missense_Mutation p.R168W 0.27 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 17 19316373 19316373 A G RNF112 Silent p.P168P 0.29 TCGA-2W-A8YY-01 17 19316668 19316668 G A RNF112 Missense_Mutation p.A222T 0.28 tolerated(1) benign(0.005) TCGA-2W-A8YY-01 17 19319419 19319419 C T RNF112 Silent p.G609G 0.42 TCGA-2W-A8YY-01 17 1943110 1943110 G A DPH1 Missense_Mutation p.A253T 0.44 deleterious(0.04) benign(0.117) TCGA-2W-A8YY-01 17 1946174 1946174 C A OVCA2 Silent p.R154R 0.27 TCGA-2W-A8YY-01 17 1960252 1960252 G A HIC1 Missense_Mutation p.G109S 0.14 tolerated(0.54) probably_damaging(0.961) TCGA-2W-A8YY-01 17 1961952 1961952 G A HIC1 Silent p.A675A 0.43 TCGA-2W-A8YY-01 17 19685320 19685320 G T ULK2 Missense_Mutation p.L841M 0.35 tolerated(0.78) possibly_damaging(0.633) TCGA-2W-A8YY-01 17 19809169 19809169 G A AKAP10 3'UTR 0.28 TCGA-2W-A8YY-01 17 19809305 19809305 A G AKAP10 3'UTR 0.32 TCGA-2W-A8YY-01 17 20140304 20140304 G A SPECC1 Intron 0.36 TCGA-2W-A8YY-01 17 20217547 20217547 C T SPECC1 3'UTR 0.78 TCGA-2W-A8YY-01 17 20239197 20239197 G T RN7SL17P 5'Flank 0.46 TCGA-2W-A8YY-01 17 20841478 20841478 C A RP11-381P6.1 5'Flank 0.41 TCGA-2W-A8YY-01 17 20884897 20884897 C T RP11-381P6.1 RNA 0.35 TCGA-2W-A8YY-01 17 20919147 20919147 C T USP22 Silent p.A252A 0.22 TCGA-2W-A8YY-01 17 20931943 20931943 C T USP22 Silent p.R72R 0.32 TCGA-2W-A8YY-01 17 21319129 21319129 G A KCNJ12 Missense_Mutation p.V159I 0.10 tolerated(1) benign(0.015) TCGA-2W-A8YY-01 17 21319232 21319232 C T KCNJ12 Missense_Mutation p.T193M 0.16 deleterious(0.02) probably_damaging(0.945) TCGA-2W-A8YY-01 17 21319364 21319364 T C KCNJ12 Missense_Mutation p.V237A 0.11 tolerated(0.1) benign(0.217) TCGA-2W-A8YY-01 17 21319540 21319540 G A KCNJ12 Missense_Mutation p.V296M 0.17 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 17 21320423 21320423 A C KCNJ12 3'UTR 0.18 TCGA-2W-A8YY-01 17 21322319 21322319 C T KCNJ12 3'UTR 0.33 TCGA-2W-A8YY-01 17 21322464 21322464 G T KCNJ12 3'UTR 0.29 TCGA-2W-A8YY-01 17 21438792 21438792 A G C17orf51 Silent p.S145S 0.29 TCGA-2W-A8YY-01 17 21477580 21477580 T C AC138710.1 5'Flank 0.21 TCGA-2W-A8YY-01 17 21477681 21477681 G A AC138710.1 5'Flank 0.54 TCGA-2W-A8YY-01 17 21911546 21911546 C T RP11-744K17.9 RNA 0.23 TCGA-2W-A8YY-01 17 2196172 2196172 C A SMG6 Missense_Mutation p.A751S 0.29 tolerated(0.12) probably_damaging(0.98) TCGA-2W-A8YY-01 17 22024651 22024651 C T MTRNR2L1 3'Flank 0.38 TCGA-2W-A8YY-01 17 2202910 2202910 G A SMG6 Silent p.D379D 0.20 TCGA-2W-A8YY-01 17 2265041 2265041 G A SGSM2 Missense_Mutation p.A82T 0.39 deleterious(0.02) benign(0.101) TCGA-2W-A8YY-01 17 2266855 2266855 C T SGSM2 Missense_Mutation p.R257W 0.45 deleterious(0.01) possibly_damaging(0.663) TCGA-2W-A8YY-01 17 2279974 2279974 C T SGSM2 Intron 0.38 TCGA-2W-A8YY-01 17 2288120 2288120 C T MNT 3'UTR 0.29 TCGA-2W-A8YY-01 17 2290542 2290542 C T MNT Missense_Mutation p.A468T 0.46 tolerated(0.19) unknown(0) TCGA-2W-A8YY-01 17 2541601 2541601 C G PAFAH1B1 Missense_Mutation p.Q7E 0.38 deleterious(0) possibly_damaging(0.718) TCGA-2W-A8YY-01 17 25634993 25634993 T G WSB1 Intron 0.35 TCGA-2W-A8YY-01 17 25635822 25635823 - T WSB1 Intron 0.21 TCGA-2W-A8YY-01 17 25637134 25637134 A G WSB1 Missense_Mutation p.D311G 0.44 tolerated(0.44) benign(0.028) TCGA-2W-A8YY-01 17 25910117 25910117 C T KSR1 Silent p.D185D 0.40 TCGA-2W-A8YY-01 17 25919419 25919419 C T KSR1 Missense_Mutation p.A251V 0.41 tolerated(0.05) benign(0.242) TCGA-2W-A8YY-01 17 2593029 2593029 C T CLUH 3'UTR 0.41 TCGA-2W-A8YY-01 17 2593859 2593859 G A CLUH 3'UTR 0.48 TCGA-2W-A8YY-01 17 2594971 2594971 C T CLUH Silent p.T1226T 0.34 TCGA-2W-A8YY-01 17 2596101 2596101 G A CLUH Silent p.T1056T 0.10 TCGA-2W-A8YY-01 17 25976115 25976115 G A LGALS9 3'UTR 0.37 TCGA-2W-A8YY-01 17 2604658 2604658 A G CLUH Splice_Site p.X262_splice 0.36 TCGA-2W-A8YY-01 17 2605218 2605218 G A CLUH Silent p.G165G 0.42 TCGA-2W-A8YY-01 17 26084265 26084265 T C NOS2 3'UTR 0.26 TCGA-2W-A8YY-01 17 26087700 26087700 C T NOS2 Missense_Mutation p.A987T 0.38 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 17 26096035 26096035 C T NOS2 Missense_Mutation p.A668T 0.29 deleterious(0.04) probably_damaging(0.916) TCGA-2W-A8YY-01 17 26109980 26109980 G A NOS2 Missense_Mutation p.S207F 0.48 deleterious(0) probably_damaging(0.949) TCGA-2W-A8YY-01 17 26369825 26369825 G A NLK 5'UTR 0.40 TCGA-2W-A8YY-01 17 26370248 26370248 G A NLK Missense_Mutation p.A117T 0.30 tolerated(0.39) benign(0.068) TCGA-2W-A8YY-01 17 26370286 26370286 G A NLK Silent p.S129S 0.42 TCGA-2W-A8YY-01 17 26459658 26459658 C A NLK Missense_Mutation p.L201I 0.12 tolerated(0.26) benign(0.248) TCGA-2W-A8YY-01 17 26652656 26652656 C T TMEM97 Missense_Mutation p.T85M 0.12 deleterious(0.02) probably_damaging(0.946) TCGA-2W-A8YY-01 17 26655588 26655588 G A IFT20 3'UTR 0.30 TCGA-2W-A8YY-01 17 26677487 26677487 G A POLDIP2 Nonsense_Mutation p.R296* 0.26 TCGA-2W-A8YY-01 17 26731672 26731672 A G SLC46A1 Missense_Mutation p.V348A 0.50 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 17 26732272 26732272 C T SLC46A1 Missense_Mutation p.R148H 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 26732480 26732480 C A SLC46A1 Nonsense_Mutation p.E79* 0.41 TCGA-2W-A8YY-01 17 26733020 26733020 A G SLC46A1 Missense_Mutation p.L38P 0.50 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 26900760 26900760 C T ALDOC Missense_Mutation p.R331Q 0.37 deleterious(0) probably_damaging(0.94) TCGA-2W-A8YY-01 17 26901547 26901547 G A ALDOC Missense_Mutation p.H197Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 26958544 26958544 A C KIAA0100 Missense_Mutation p.L1418V 0.40 tolerated(0.71) possibly_damaging(0.852) TCGA-2W-A8YY-01 17 27211302 27211302 G A FLOT2 Missense_Mutation p.R55C 0.60 deleterious(0.02) probably_damaging(0.914) TCGA-2W-A8YY-01 17 27382135 27382135 G A PIPOX Missense_Mutation p.A288T 0.24 tolerated(0.44) benign(0.007) TCGA-2W-A8YY-01 17 27424909 27424909 G A MYO18A Silent p.Y1333Y 0.36 TCGA-2W-A8YY-01 17 27425968 27425968 C T MYO18A Missense_Mutation p.R1219H 0.42 deleterious(0.04) benign(0.176) TCGA-2W-A8YY-01 17 27437610 27437610 G A MYO18A Silent p.R977R 0.42 TCGA-2W-A8YY-01 17 27590891 27590891 G A NUFIP2 3'UTR 0.37 TCGA-2W-A8YY-01 17 27870183 27870183 C T TAOK1 3'UTR 0.33 TCGA-2W-A8YY-01 17 27878013 27878013 T - TAOK1 3'UTR 0.27 TCGA-2W-A8YY-01 17 27899563 27899563 G A TP53I13 Missense_Mutation p.R306H 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 27903994 27903994 G A GIT1 Missense_Mutation p.R381W 0.13 deleterious(0.01) possibly_damaging(0.789) TCGA-2W-A8YY-01 17 27939213 27939213 G A ANKRD13B Missense_Mutation p.A394T 0.26 deleterious(0) possibly_damaging(0.615) TCGA-2W-A8YY-01 17 27939426 27939426 C T ANKRD13B Missense_Mutation p.P422L 0.50 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 17 27939815 27939815 G A ANKRD13B Silent p.A519A 0.38 TCGA-2W-A8YY-01 17 27941219 27941219 C T ANKRD13B 3'UTR 0.33 TCGA-2W-A8YY-01 17 27948329 27948329 G T CORO6 Missense_Mutation p.S37R 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 17 27953743 27953743 G A SSH2 3'UTR 0.39 TCGA-2W-A8YY-01 17 27957980 27957980 C T SSH2 Missense_Mutation p.C1384Y 0.52 tolerated_low_confidence(0.17) benign(0.105) TCGA-2W-A8YY-01 17 2808587 2808587 G A RAP1GAP2 Silent p.E30E 0.46 TCGA-2W-A8YY-01 17 28088297 28088297 G T SSH2 Intron 0.40 TCGA-2W-A8YY-01 17 28576105 28576105 A G BLMH Missense_Mutation p.V433A 0.21 deleterious(0.01) possibly_damaging(0.897) TCGA-2W-A8YY-01 17 28618496 28618496 A G BLMH Missense_Mutation p.I15T 0.45 tolerated(0.76) benign(0.001) TCGA-2W-A8YY-01 17 28747952 28747952 G A CPD Missense_Mutation p.R363Q 0.42 tolerated(0.68) benign(0.004) TCGA-2W-A8YY-01 17 28773005 28773005 T C CPD Missense_Mutation p.V947A 0.29 tolerated(0.52) benign(0.403) TCGA-2W-A8YY-01 17 28849322 28849322 C T GOSR1 Missense_Mutation p.R227W 0.09 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 17 29258972 29258972 C T ADAP2 Missense_Mutation p.T128I 0.40 tolerated(0.13) benign(0.001) TCGA-2W-A8YY-01 17 29325710 29325710 G T RNF135 Missense_Mutation p.S267I 0.11 deleterious(0) possibly_damaging(0.852) TCGA-2W-A8YY-01 17 2936793 2936793 G A RAP1GAP2 3'UTR 0.26 TCGA-2W-A8YY-01 17 2937644 2937644 G A RAP1GAP2 3'UTR 0.40 TCGA-2W-A8YY-01 17 29553667 29553667 T C NF1 Missense_Mutation p.M739T 0.38 tolerated(0.51) benign(0.016) TCGA-2W-A8YY-01 17 29562747 29562747 G A NF1 Missense_Mutation p.R1276Q 0.45 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 17 29622487 29622487 G A OMG Missense_Mutation p.T288I 0.43 tolerated(0.06) benign(0.095) TCGA-2W-A8YY-01 17 29622755 29622755 G A OMG Missense_Mutation p.H199Y 0.13 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 17 29645590 29645590 T C EVI2A Missense_Mutation p.I171V 0.33 tolerated(0.06) possibly_damaging(0.636) TCGA-2W-A8YY-01 17 2966074 2966074 C T OR1D5 Missense_Mutation p.M276I 0.23 tolerated(0.14) benign(0.012) TCGA-2W-A8YY-01 17 29664504 29664504 C A NF1 Nonsense_Mutation p.Y2182* 0.38 TCGA-2W-A8YY-01 17 29667632 29667632 C T NF1 Missense_Mutation p.T2344I 0.32 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 17 29687686 29687686 C T NF1 Missense_Mutation p.S2781F 0.31 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-2W-A8YY-01 17 29701330 29701330 C T NF1 3'UTR 0.41 TCGA-2W-A8YY-01 17 29704125 29704125 T C NF1 3'UTR 0.36 TCGA-2W-A8YY-01 17 29704195 29704195 T - NF1 3'UTR 0.30 TCGA-2W-A8YY-01 17 29855756 29855756 G A RAB11FIP4 Missense_Mutation p.R538H 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 29859431 29859431 G A RAB11FIP4 3'UTR 0.37 TCGA-2W-A8YY-01 17 29864566 29864566 G A RAB11FIP4 3'UTR 0.28 TCGA-2W-A8YY-01 17 29864862 29864862 C T RAB11FIP4 3'UTR 0.43 TCGA-2W-A8YY-01 17 3030602 3030602 G T OR1G1 Missense_Mutation p.L82M 0.31 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 17 30377107 30377107 T C LRRC37B Missense_Mutation p.I921T 0.36 deleterious(0) benign(0.152) TCGA-2W-A8YY-01 17 30552504 30552504 C T RHOT1 3'UTR 0.28 TCGA-2W-A8YY-01 17 30664919 30664919 A G C17orf75 Silent p.C182C 0.42 TCGA-2W-A8YY-01 17 30817704 30817704 A - CDK5R1 3'UTR 0.21 TCGA-2W-A8YY-01 17 30819747 30819747 G A MYO1D 3'UTR 0.42 TCGA-2W-A8YY-01 17 3101040 3101040 A G OR1A2 Silent p.V76V 0.39 TCGA-2W-A8YY-01 17 31350983 31350983 G T ASIC2 Nonsense_Mutation p.C415* 0.33 TCGA-2W-A8YY-01 17 32598229 32598229 G T CCL7 Missense_Mutation p.R47S 0.26 deleterious(0) possibly_damaging(0.77) TCGA-2W-A8YY-01 17 32953265 32953265 C T TMEM132E Missense_Mutation p.P63S 0.53 tolerated(0.13) benign(0.008) TCGA-2W-A8YY-01 17 32956082 32956082 C T TMEM132E Silent p.N309N 0.51 TCGA-2W-A8YY-01 17 32959817 32959817 C A TMEM132E Missense_Mutation p.A436D 0.33 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 17 3301374 3301374 C T OR1E1 Missense_Mutation p.E111K 0.38 deleterious(0) possibly_damaging(0.786) TCGA-2W-A8YY-01 17 3324558 3324558 G A OR3A3 Missense_Mutation p.A233T 0.43 deleterious(0.04) benign(0.367) TCGA-2W-A8YY-01 17 33266229 33266229 G A CCT6B Missense_Mutation p.R396C 0.42 deleterious(0.02) possibly_damaging(0.893) TCGA-2W-A8YY-01 17 33281471 33281471 C T CCT6B Missense_Mutation p.A162T 0.38 tolerated(0.29) benign(0.016) TCGA-2W-A8YY-01 17 33428251 33428251 C T RAD51L3-RFFL Missense_Mutation p.R132H 0.53 tolerated(0.16) benign(0.049) TCGA-2W-A8YY-01 17 33443999 33443999 C T RAD51D Missense_Mutation p.A68T 0.40 tolerated(0.42) possibly_damaging(0.716) TCGA-2W-A8YY-01 17 33444045 33444045 C T RAD51D Silent p.A52A 0.34 TCGA-2W-A8YY-01 17 33448343 33448343 G T RAD51L3-RFFL 5'UTR 0.30 TCGA-2W-A8YY-01 17 33482383 33482383 G A UNC45B Silent p.E236E 0.34 TCGA-2W-A8YY-01 17 33501295 33501295 G A UNC45B Missense_Mutation p.R624Q 0.27 deleterious(0.04) benign(0.155) TCGA-2W-A8YY-01 17 33520845 33520845 C A SLC35G3 Missense_Mutation p.G161V 0.33 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 17 33585815 33585815 C T SLFN5 Missense_Mutation p.R36W 0.23 deleterious(0.02) benign(0.051) TCGA-2W-A8YY-01 17 33591589 33591589 C T SLFN5 Missense_Mutation p.S509L 0.36 tolerated(0.07) benign(0) TCGA-2W-A8YY-01 17 33592719 33592719 G A SLFN5 Missense_Mutation p.G830S 0.52 tolerated(0.97) benign(0.016) TCGA-2W-A8YY-01 17 3365849 3365849 C T SPATA22 Missense_Mutation p.R86H 0.29 tolerated(0.59) benign(0.002) TCGA-2W-A8YY-01 17 33679748 33679748 C T SLFN11 Missense_Mutation p.R778Q 0.32 tolerated(0.08) benign(0) TCGA-2W-A8YY-01 17 33690337 33690337 C A SLFN11 Nonsense_Mutation p.G164* 0.23 TCGA-2W-A8YY-01 17 33690753 33690753 G T SLFN11 Missense_Mutation p.T25N 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 3372612 3372612 C T SPATA22 Missense_Mutation p.R3Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 33749900 33749900 C T SLFN12 Missense_Mutation p.A50T 0.26 tolerated(0.09) benign(0.091) TCGA-2W-A8YY-01 17 33772698 33772698 A G SLFN13 Translation_Start_Site p.M1? 0.59 deleterious(0) possibly_damaging(0.636) TCGA-2W-A8YY-01 17 33849828 33849828 C T SLFN12L 5'UTR 0.50 TCGA-2W-A8YY-01 17 3386795 3386795 T C ASPA Silent p.T145T 0.35 TCGA-2W-A8YY-01 17 33875444 33875444 C T SLFN14 Silent p.P851P 0.39 TCGA-2W-A8YY-01 17 33904210 33904210 A G PEX12 Missense_Mutation p.V176A 0.09 tolerated(0.63) benign(0.078) TCGA-2W-A8YY-01 17 33905026 33905026 C T PEX12 Silent p.G5G 0.36 TCGA-2W-A8YY-01 17 34044223 34044223 C T AP2B1 Missense_Mutation p.S879F 0.38 tolerated(0.07) possibly_damaging(0.673) TCGA-2W-A8YY-01 17 34069038 34069038 C T RASL10B 3'UTR 0.32 TCGA-2W-A8YY-01 17 34074928 34074928 C T GAS2L2 Missense_Mutation p.G258S 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 34106033 34106033 G A MMP28 Missense_Mutation p.R80C 0.46 tolerated(0.05) possibly_damaging(0.62) TCGA-2W-A8YY-01 17 34171549 34171549 G A TAF15 Missense_Mutation p.G416S 0.46 deleterious_low_confidence(0.05) unknown(0) TCGA-2W-A8YY-01 17 34183736 34183736 G A C17orf66 Missense_Mutation p.A409V 0.22 tolerated(0.13) benign(0.14) TCGA-2W-A8YY-01 17 34192330 34192330 G A C17orf66 Missense_Mutation p.P70L 0.45 deleterious(0) possibly_damaging(0.864) TCGA-2W-A8YY-01 17 3422008 3422008 C A TRPV3 Missense_Mutation p.K649N 0.28 deleterious(0.02) benign(0.017) TCGA-2W-A8YY-01 17 34233812 34233812 T G AC015849.16 RNA 0.24 TCGA-2W-A8YY-01 17 34233997 34233997 C T AC015849.16 RNA 0.52 TCGA-2W-A8YY-01 17 34261765 34261765 C A LYZL6 3'UTR 0.42 TCGA-2W-A8YY-01 17 34308477 34308477 G A CCL16 5'UTR 0.54 TCGA-2W-A8YY-01 17 3432147 3432147 C T TRPV3 Missense_Mutation p.R462H 0.58 tolerated(0.1) benign(0.048) TCGA-2W-A8YY-01 17 3435971 3435971 C T TRPV3 Missense_Mutation p.A349T 0.35 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 17 3448564 3448564 C T TRPV3 Missense_Mutation p.A41T 0.33 deleterious(0.04) benign(0.026) TCGA-2W-A8YY-01 17 3483822 3483822 C A SHPK Splice_Site p.X493_splice 0.32 TCGA-2W-A8YY-01 17 34856677 34856677 G A MYO19 Silent p.I790I 0.38 TCGA-2W-A8YY-01 17 34856694 34856694 G A MYO19 Missense_Mutation p.R785W 0.44 tolerated(0.17) benign(0.002) TCGA-2W-A8YY-01 17 34859011 34859011 T C MYO19 Missense_Mutation p.Y669C 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 34862401 34862401 T C MYO19 Missense_Mutation p.D564G 0.30 tolerated(0.25) probably_damaging(0.954) TCGA-2W-A8YY-01 17 34862858 34862858 C T MYO19 Missense_Mutation p.V530M 0.40 tolerated(0.14) benign(0.17) TCGA-2W-A8YY-01 17 34870989 34870989 C T MYO19 Missense_Mutation p.R195H 0.83 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 34894680 34894680 G A PIGW 3'UTR 0.31 TCGA-2W-A8YY-01 17 3491490 3491490 C T SHPK Missense_Mutation p.E406K 0.46 tolerated(0.65) benign(0.037) TCGA-2W-A8YY-01 17 3491521 3491521 C T SHPK Silent p.S395S 0.22 TCGA-2W-A8YY-01 17 34923605 34923605 C T GGNBP2 Nonsense_Mutation p.R211* 0.36 TCGA-2W-A8YY-01 17 34942565 34942565 C T GGNBP2 Silent p.N526N 0.23 TCGA-2W-A8YY-01 17 34945824 34945824 A G GGNBP2 Missense_Mutation p.T693A 0.47 tolerated_low_confidence(0.13) possibly_damaging(0.801) TCGA-2W-A8YY-01 17 34945960 34945960 C T GGNBP2 3'UTR 0.39 TCGA-2W-A8YY-01 17 34954651 34954651 G A DHRS11 Silent p.R139R 0.41 TCGA-2W-A8YY-01 17 34964423 34964423 A G MRM1 Silent p.G286G 0.38 TCGA-2W-A8YY-01 17 3518742 3518742 C T SHPK Missense_Mutation p.A305T 0.38 tolerated(0.61) benign(0.003) TCGA-2W-A8YY-01 17 35295407 35295407 G T LHX1 5'UTR 0.33 TCGA-2W-A8YY-01 17 35300338 35300338 G A LHX1 Silent p.P377P 0.13 TCGA-2W-A8YY-01 17 35346585 35346585 G A AATF Missense_Mutation p.D397N 0.28 deleterious(0) possibly_damaging(0.475) TCGA-2W-A8YY-01 17 35506889 35506889 G A ACACA Missense_Mutation p.R1860W 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 3552213 3552213 G A CTNS Silent p.E71E 0.29 TCGA-2W-A8YY-01 17 35549065 35549065 C T ACACA Missense_Mutation p.R1461H 0.37 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 3559991 3559991 C T CTNS Missense_Mutation p.P195S 0.33 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 17 35615241 35615241 C T ACACA Missense_Mutation p.V519I 0.41 tolerated(0.46) benign(0.067) TCGA-2W-A8YY-01 17 3564100 3564100 C T CTNS 3'UTR 0.55 TCGA-2W-A8YY-01 17 35872341 35872341 C T DUSP14 5'UTR 0.41 TCGA-2W-A8YY-01 17 35873585 35873585 C T DUSP14 3'UTR 0.50 TCGA-2W-A8YY-01 17 35960424 35960424 A G SYNRG Missense_Mutation p.I35T 0.46 deleterious_low_confidence(0) benign(0.121) TCGA-2W-A8YY-01 17 3629371 3629371 C T GSG2 Silent p.D714D 0.35 TCGA-2W-A8YY-01 17 36485581 36485581 C A GPR179 Missense_Mutation p.G1291W 0.17 deleterious(0.01) possibly_damaging(0.599) TCGA-2W-A8YY-01 17 36499426 36499426 G A GPR179 Missense_Mutation p.R83C 0.30 deleterious(0.03) possibly_damaging(0.462) TCGA-2W-A8YY-01 17 36551661 36551661 T C SOCS7 Missense_Mutation p.V530A 0.33 deleterious(0.01) possibly_damaging(0.722) TCGA-2W-A8YY-01 17 36619615 36619615 C A ARHGAP23 Missense_Mutation p.L159I 0.32 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 17 36623336 36623336 C T ARHGAP23 Missense_Mutation p.P471L 0.59 deleterious(0.01) benign(0.173) TCGA-2W-A8YY-01 17 36626089 36626089 C T ARHGAP23 Missense_Mutation p.R640C 0.49 deleterious(0.01) benign(0.055) TCGA-2W-A8YY-01 17 36687786 36687786 T - SRCIN1 3'UTR 0.41 TCGA-2W-A8YY-01 17 36687962 36687962 C T SRCIN1 3'UTR 0.48 TCGA-2W-A8YY-01 17 36734788 36734788 C T SRCIN1 Silent p.Q93Q 0.44 TCGA-2W-A8YY-01 17 36865798 36865798 C T MLLT6 Silent p.C174C 0.50 TCGA-2W-A8YY-01 17 36868962 36868962 C T MLLT6 Missense_Mutation p.R247C 0.32 deleterious(0) unknown(0) TCGA-2W-A8YY-01 17 36873833 36873833 C A MLLT6 Silent p.L600L 0.39 TCGA-2W-A8YY-01 17 36881211 36881211 C T MLLT6 Silent p.G1074G 0.36 TCGA-2W-A8YY-01 17 36882261 36882261 G - MLLT6 3'UTR 0.16 TCGA-2W-A8YY-01 17 36884899 36884899 G A MLLT6 3'UTR 0.43 TCGA-2W-A8YY-01 17 36891731 36891731 G A PCGF2 Silent p.S260S 0.31 TCGA-2W-A8YY-01 17 36927519 36927519 C T PIP4K2B Missense_Mutation p.A272T 0.37 tolerated(0.35) benign(0.052) TCGA-2W-A8YY-01 17 36936839 36936839 C T PIP4K2B Missense_Mutation p.A125T 0.31 tolerated(0.17) benign(0.42) TCGA-2W-A8YY-01 17 36963163 36963163 C T CWC25 Missense_Mutation p.G253R 0.23 tolerated(0.6) benign(0.001) TCGA-2W-A8YY-01 17 36963225 36963225 C T CWC25 Missense_Mutation p.R232Q 0.54 deleterious(0.04) benign(0.308) TCGA-2W-A8YY-01 17 36966765 36966765 C T CWC25 Silent p.S194S 0.39 TCGA-2W-A8YY-01 17 37006701 37006701 C T RPL23 Missense_Mutation p.R85Q 0.47 tolerated(0.07) benign(0.1) TCGA-2W-A8YY-01 17 3716327 3716327 C T C17orf85 3'UTR 0.31 TCGA-2W-A8YY-01 17 37186388 37186388 G T CTD-2206N4.2 5'Flank 0.43 TCGA-2W-A8YY-01 17 37264469 37264469 G A PLXDC1 Missense_Mutation p.R167W 0.47 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 17 37265553 37265553 C T PLXDC1 Missense_Mutation p.R116Q 0.45 tolerated(0.44) benign(0.004) TCGA-2W-A8YY-01 17 37322051 37322051 C T ARL5C 5'UTR 0.14 TCGA-2W-A8YY-01 17 37334246 37334246 C T CACNB1 Silent p.Q379Q 0.33 TCGA-2W-A8YY-01 17 37360380 37360380 G A RPL19 Missense_Mutation p.R136Q 0.50 tolerated(0.09) benign(0.013) TCGA-2W-A8YY-01 17 37360933 37360933 C T RPL19 3'UTR 0.32 TCGA-2W-A8YY-01 17 37371242 37371242 C T STAC2 Missense_Mutation p.G245D 0.34 tolerated(0.1) benign(0.19) TCGA-2W-A8YY-01 17 3743465 3743465 C T C17orf85 Missense_Mutation p.R95H 0.42 deleterious(0) possibly_damaging(0.828) TCGA-2W-A8YY-01 17 37566591 37566591 G A MED1 Missense_Mutation p.T628M 0.44 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-2W-A8YY-01 17 3775891 3775891 G T CAMKK1 Missense_Mutation p.L399I 0.45 deleterious(0.03) probably_damaging(0.994) TCGA-2W-A8YY-01 17 37825953 37825953 A G PNMT Missense_Mutation p.S92G 0.10 deleterious(0.02) benign(0.025) TCGA-2W-A8YY-01 17 37829796 37829796 C A PGAP3 Missense_Mutation p.G222V 0.39 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 17 3785558 3785558 C T CAMKK1 Silent p.A264A 0.40 TCGA-2W-A8YY-01 17 37899533 37899533 C T GRB7 Silent p.Y211Y 0.29 TCGA-2W-A8YY-01 17 37903268 37903268 C T GRB7 3'UTR 0.43 TCGA-2W-A8YY-01 17 37922111 37922111 G A IKZF3 Nonsense_Mutation p.R488* 0.28 TCGA-2W-A8YY-01 17 38064479 38064479 C T GSDMB Intron 0.38 TCGA-2W-A8YY-01 17 38073461 38073461 A G GSDMB Missense_Mutation p.F37L 0.44 tolerated(0.3) benign(0.042) TCGA-2W-A8YY-01 17 38131236 38131236 C T GSDMA Silent p.G330G 0.39 TCGA-2W-A8YY-01 17 38146392 38146392 C T PSMD3 Missense_Mutation p.T308M 0.32 deleterious(0.01) benign(0.115) TCGA-2W-A8YY-01 17 38171930 38171930 C T CSF3 Intron 0.09 TCGA-2W-A8YY-01 17 38176535 38176535 G A MED24 Nonsense_Mutation p.R899* 0.37 TCGA-2W-A8YY-01 17 38182510 38182510 G A MED24 Silent p.V628V 0.33 TCGA-2W-A8YY-01 17 38186077 38186077 G A MED24 Missense_Mutation p.S397L 0.37 tolerated(0.17) possibly_damaging(0.452) TCGA-2W-A8YY-01 17 38189352 38189352 G A MED24 Missense_Mutation p.T260M 0.45 tolerated(0.16) benign(0.015) TCGA-2W-A8YY-01 17 38240996 38240996 C T THRA Silent p.I168I 0.33 TCGA-2W-A8YY-01 17 38244737 38244737 G A THRA Silent p.V322V 0.55 TCGA-2W-A8YY-01 17 38289323 38289323 G A MSL1 Missense_Mutation p.R243Q 0.50 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 17 3831957 3831957 C T ATP2A3 Missense_Mutation p.A994T 0.41 tolerated_low_confidence(0.1) benign(0.072) TCGA-2W-A8YY-01 17 3839621 3839621 G A ATP2A3 Missense_Mutation p.R822W 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 3844786 3844786 G A ATP2A3 Missense_Mutation p.P570S 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-2W-A8YY-01 17 38510673 38510673 C T RARA Silent p.V309V 0.40 TCGA-2W-A8YY-01 17 38511547 38511547 G T RARA Missense_Mutation p.D349Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 38511564 38511564 G A RARA Silent p.P354P 0.44 TCGA-2W-A8YY-01 17 38545864 38545864 G A TOP2A Silent p.D1501D 0.28 TCGA-2W-A8YY-01 17 38643407 38643407 C T TNS4 Missense_Mutation p.R390Q 0.36 tolerated(0.41) benign(0.007) TCGA-2W-A8YY-01 17 38711187 38711187 G T CCR7 Missense_Mutation p.A315D 0.43 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 17 38787108 38787108 C T SMARCE1 Silent p.Q295Q 0.39 TCGA-2W-A8YY-01 17 38788542 38788542 G A SMARCE1 Missense_Mutation p.L207F 0.37 tolerated(0.8) possibly_damaging(0.86) TCGA-2W-A8YY-01 17 38813666 38813666 G T KRT222 Silent p.T199T 0.29 TCGA-2W-A8YY-01 17 38922791 38922791 T C KRT26 Silent p.Q461Q 0.10 TCGA-2W-A8YY-01 17 38936678 38936678 G A KRT27 Silent p.S186S 0.42 TCGA-2W-A8YY-01 17 38975882 38975882 C T KRT10 Silent p.Q420Q 0.44 TCGA-2W-A8YY-01 17 39114809 39114809 G A KRT39 3'UTR 0.48 TCGA-2W-A8YY-01 17 3912207 3912207 C T ZZEF1 Silent p.T2925T 0.36 TCGA-2W-A8YY-01 17 3919651 3919651 G A ZZEF1 Missense_Mutation p.S2704L 0.29 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 39240725 39240725 C A KRTAP4-7 Nonsense_Mutation p.C89* 0.41 TCGA-2W-A8YY-01 17 39316749 39316749 G A KRTAP4-4 Silent p.C65C 0.08 TCGA-2W-A8YY-01 17 39323918 39323918 G T KRTAP4-3 Nonsense_Mutation p.C169* 0.09 TCGA-2W-A8YY-01 17 3935533 3935533 C T ZZEF1 Missense_Mutation p.R2260H 0.40 tolerated(0.07) probably_damaging(0.96) TCGA-2W-A8YY-01 17 3935534 3935534 G A ZZEF1 Missense_Mutation p.R2260C 0.44 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 17 39406501 39406501 G A KRTAP9-4 3'UTR 0.39 TCGA-2W-A8YY-01 17 39553667 39553667 C A KRT31 Missense_Mutation p.S42I 0.35 deleterious(0.01) benign(0.282) TCGA-2W-A8YY-01 17 39580267 39580267 G A KRT37 Intron 0.10 TCGA-2W-A8YY-01 17 39657428 39657428 C T KRT13 3'UTR 0.36 TCGA-2W-A8YY-01 17 39674719 39674719 C T KRT15 Missense_Mutation p.D121N 0.47 deleterious(0.02) possibly_damaging(0.854) TCGA-2W-A8YY-01 17 39681228 39681228 C T KRT19 Missense_Mutation p.R176H 0.45 deleterious(0.03) benign(0.086) TCGA-2W-A8YY-01 17 39872177 39872177 C A GAST 3'UTR 0.38 TCGA-2W-A8YY-01 17 39880988 39880988 C T HAP1 Missense_Mutation p.A609T 0.32 tolerated_low_confidence(0.08) possibly_damaging(0.695) TCGA-2W-A8YY-01 17 39883360 39883360 C T HAP1 Missense_Mutation p.E438K 0.36 deleterious(0.04) possibly_damaging(0.801) TCGA-2W-A8YY-01 17 39911280 39911280 T C JUP 3'UTR 0.26 TCGA-2W-A8YY-01 17 39913738 39913738 C T JUP Missense_Mutation p.D659N 0.39 tolerated(0.09) benign(0.002) TCGA-2W-A8YY-01 17 39925679 39925679 G A JUP Silent p.D153D 0.12 TCGA-2W-A8YY-01 17 40123948 40123948 G A CNP Missense_Mutation p.V239I 0.43 tolerated(0.18) benign(0.002) TCGA-2W-A8YY-01 17 40126215 40126215 G A CNP 3'UTR 0.33 TCGA-2W-A8YY-01 17 40128335 40128335 C T CNP 3'UTR 0.43 TCGA-2W-A8YY-01 17 40262825 40262825 C T DHX58 Silent p.P159P 0.09 TCGA-2W-A8YY-01 17 40262927 40262927 G T DHX58 Missense_Mutation p.F125L 0.16 tolerated(0.16) probably_damaging(0.98) TCGA-2W-A8YY-01 17 40263750 40263750 A G DHX58 Missense_Mutation p.V54A 0.22 deleterious(0.03) probably_damaging(0.98) TCGA-2W-A8YY-01 17 40269819 40269819 C T KAT2A Silent p.T435T 0.11 TCGA-2W-A8YY-01 17 4027223 4027223 T C ZZEF1 Silent p.L159L 0.10 TCGA-2W-A8YY-01 17 40312142 40312142 T C KCNH4 Silent p.G990G 0.39 TCGA-2W-A8YY-01 17 40322233 40322233 C T KCNH4 Missense_Mutation p.A428T 0.33 tolerated(1) benign(0.005) TCGA-2W-A8YY-01 17 40370324 40370324 A T STAT5B Silent p.P338P 0.50 TCGA-2W-A8YY-01 17 40371809 40371809 T A STAT5B Missense_Mutation p.E201V 0.10 tolerated(0.06) probably_damaging(0.991) TCGA-2W-A8YY-01 17 40466456 40466456 G A STAT3 3'UTR 0.28 TCGA-2W-A8YY-01 17 40467299 40467299 G T STAT3 3'UTR 0.21 TCGA-2W-A8YY-01 17 40556937 40556937 G A PTRF Missense_Mutation p.A314V 0.18 deleterious(0) benign(0.105) TCGA-2W-A8YY-01 17 4070159 4070159 C T ANKFY1 3'UTR 0.50 TCGA-2W-A8YY-01 17 40705558 40705558 C A HSD17B1 Missense_Mutation p.L123M 0.36 deleterious(0.04) possibly_damaging(0.512) TCGA-2W-A8YY-01 17 4071196 4071196 G A ANKFY1 Silent p.C1171C 0.21 TCGA-2W-A8YY-01 17 40716155 40716155 C T COASY Missense_Mutation p.R322C 0.37 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 40719340 40719340 T C MLX Silent p.C66C 0.38 TCGA-2W-A8YY-01 17 40724720 40724720 T C PSMC3IP 3'UTR 0.49 TCGA-2W-A8YY-01 17 40725023 40725023 G A PSMC3IP Missense_Mutation p.T206M 0.46 deleterious(0.03) possibly_damaging(0.908) TCGA-2W-A8YY-01 17 40733613 40733613 C T FAM134C 3'UTR 0.29 TCGA-2W-A8YY-01 17 40734274 40734274 T G FAM134C Missense_Mutation p.S320R 0.19 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 4077312 4077312 G A ANKFY1 Missense_Mutation p.R981C 0.33 deleterious(0.04) benign(0.052) TCGA-2W-A8YY-01 17 40823095 40823095 G A PLEKHH3 Silent p.F446F 0.42 TCGA-2W-A8YY-01 17 40825471 40825471 G A PLEKHH3 Silent p.I198I 0.10 TCGA-2W-A8YY-01 17 40832489 40832489 G A CCR10 Silent p.A57A 0.33 TCGA-2W-A8YY-01 17 40911839 40911841 GAG - RAMP2 5'Flank 0.42 TCGA-2W-A8YY-01 17 4092706 4092706 C T ANKFY1 Missense_Mutation p.G523S 0.16 tolerated(0.29) probably_damaging(0.975) TCGA-2W-A8YY-01 17 40939300 40939300 C T WNK4 Missense_Mutation p.A494V 0.39 tolerated(0.46) unknown(0) TCGA-2W-A8YY-01 17 40962542 40962542 A G BECN1 3'UTR 0.29 TCGA-2W-A8YY-01 17 40995163 40995163 C T PSME3 3'UTR 0.10 TCGA-2W-A8YY-01 17 4100730 4100730 C T ANKFY1 Silent p.A389A 0.40 TCGA-2W-A8YY-01 17 41019395 41019395 C A AOC4P RNA 0.53 TCGA-2W-A8YY-01 17 4109714 4109714 C T ANKFY1 Missense_Mutation p.R309Q 0.39 tolerated(0.08) benign(0.04) TCGA-2W-A8YY-01 17 41165868 41165868 C T IFI35 Missense_Mutation p.P215L 0.32 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 17 41180684 41180684 G A RND2 Missense_Mutation p.C224Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 41347050 41347050 C T NBR1 Missense_Mutation p.P582S 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 41376401 41376401 G A TMEM106A 3'Flank 0.39 TCGA-2W-A8YY-01 17 41477422 41477422 C T ARL4D Missense_Mutation p.R108W 0.15 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 41569585 41569585 T C DHX8 Missense_Mutation p.V143A 0.45 tolerated(0.78) unknown(0) TCGA-2W-A8YY-01 17 41605926 41605926 G A ETV4 Silent p.P472P 0.40 TCGA-2W-A8YY-01 17 41606049 41606049 G A ETV4 Silent p.A431A 0.39 TCGA-2W-A8YY-01 17 41606988 41606988 G A ETV4 Missense_Mutation p.R338W 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 41607294 41607294 G A ETV4 Missense_Mutation p.P305S 0.30 tolerated(0.44) benign(0.446) TCGA-2W-A8YY-01 17 41607485 41607485 G A ETV4 Silent p.D292D 0.36 TCGA-2W-A8YY-01 17 4174823 4174823 A G UBE2G1 3'UTR 0.38 TCGA-2W-A8YY-01 17 41859214 41859214 C T C17orf105 Missense_Mutation p.R90C 0.08 deleterious(0.02) benign(0.175) TCGA-2W-A8YY-01 17 41931207 41931207 G T CD300LG Missense_Mutation p.A172S 0.44 tolerated(0.18) benign(0.097) TCGA-2W-A8YY-01 17 41935120 41935120 G T CD300LG Intron 0.45 TCGA-2W-A8YY-01 17 41958148 41958148 A G MPP2 Missense_Mutation p.V354A 0.58 tolerated(0.17) possibly_damaging(0.478) TCGA-2W-A8YY-01 17 41958884 41958884 C T MPP2 Missense_Mutation p.R252H 0.30 deleterious(0.04) benign(0.056) TCGA-2W-A8YY-01 17 41959866 41959866 C T MPP2 Missense_Mutation p.R156H 0.37 deleterious(0.03) probably_damaging(0.986) TCGA-2W-A8YY-01 17 41960402 41960402 C T MPP2 Missense_Mutation p.D108N 0.25 deleterious(0.01) possibly_damaging(0.825) TCGA-2W-A8YY-01 17 42089518 42089518 G A TMEM101 Silent p.F184F 0.23 TCGA-2W-A8YY-01 17 42158177 42158177 C T HDAC5 Missense_Mutation p.R895H 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 42162507 42162507 C T HDAC5 Silent p.T690T 0.52 TCGA-2W-A8YY-01 17 42168723 42168723 G A HDAC5 Silent p.G435G 0.28 TCGA-2W-A8YY-01 17 42170065 42170065 C T HDAC5 Missense_Mutation p.D252N 0.36 deleterious(0.02) probably_damaging(0.992) TCGA-2W-A8YY-01 17 42194944 42194944 C T HDAC5 5'UTR 0.59 TCGA-2W-A8YY-01 17 42254876 42254876 C T ASB16 Intron 0.49 TCGA-2W-A8YY-01 17 42268487 42268487 A G TMUB2 3'UTR 0.27 TCGA-2W-A8YY-01 17 42272199 42272199 C T ATXN7L3 Missense_Mutation p.R232H 0.42 deleterious(0.05) benign(0.187) TCGA-2W-A8YY-01 17 42284136 42284136 C A UBTF 3'UTR 0.33 TCGA-2W-A8YY-01 17 42284869 42284869 C T UBTF Missense_Mutation p.D708N 0.22 tolerated_low_confidence(0.09) unknown(0) TCGA-2W-A8YY-01 17 42333106 42333106 C T SLC4A1 Missense_Mutation p.A579T 0.39 tolerated(0.09) possibly_damaging(0.772) TCGA-2W-A8YY-01 17 42395477 42395477 G A RUNDC3A Silent p.T404T 0.14 TCGA-2W-A8YY-01 17 42395487 42395487 C T RUNDC3A Silent p.L408L 0.37 TCGA-2W-A8YY-01 17 42432308 42432308 C T FAM171A2 Missense_Mutation p.R425H 0.30 tolerated(0.08) possibly_damaging(0.806) TCGA-2W-A8YY-01 17 42432360 42432360 A C FAM171A2 Missense_Mutation p.L408V 0.27 deleterious(0.01) benign(0.412) TCGA-2W-A8YY-01 17 42432525 42432525 T C FAM171A2 Missense_Mutation p.K353E 0.36 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 17 42433840 42433840 G A FAM171A2 Missense_Mutation p.R186W 0.11 deleterious(0.01) benign(0.019) TCGA-2W-A8YY-01 17 42455104 42455104 G A ITGA2B Silent p.L717L 0.36 TCGA-2W-A8YY-01 17 42476477 42476477 G A GPATCH8 Missense_Mutation p.R990W 0.31 deleterious(0) unknown(0) TCGA-2W-A8YY-01 17 42635825 42635825 G A FZD2 Missense_Mutation p.A257T 0.44 tolerated(0.07) benign(0.059) TCGA-2W-A8YY-01 17 42635944 42635944 G A FZD2 Silent p.A296A 0.25 TCGA-2W-A8YY-01 17 42635951 42635951 G A FZD2 Missense_Mutation p.V299M 0.52 tolerated(0.06) benign(0.166) TCGA-2W-A8YY-01 17 42636266 42636266 G A FZD2 Missense_Mutation p.V404I 0.38 deleterious(0.02) probably_damaging(0.918) TCGA-2W-A8YY-01 17 42636290 42636290 C G FZD2 Missense_Mutation p.L412V 0.33 deleterious(0.04) probably_damaging(0.996) TCGA-2W-A8YY-01 17 42828053 42828053 C T DBF4B Missense_Mutation p.A427V 0.51 tolerated_low_confidence(0.18) possibly_damaging(0.514) TCGA-2W-A8YY-01 17 42927690 42927690 T A EFTUD2 3'UTR 0.46 TCGA-2W-A8YY-01 17 42937387 42937387 G A EFTUD2 Silent p.F582F 0.38 TCGA-2W-A8YY-01 17 43003607 43003607 G A KIF18B Intron 0.25 TCGA-2W-A8YY-01 17 43102025 43102025 G A DCAKD Missense_Mutation p.R158C 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 43183681 43183681 G T NMT1 3'UTR 0.50 TCGA-2W-A8YY-01 17 43183746 43183746 C A NMT1 3'UTR 0.17 TCGA-2W-A8YY-01 17 43190892 43190892 A G PLCD3 Missense_Mutation p.V636A 0.13 deleterious(0.01) possibly_damaging(0.61) TCGA-2W-A8YY-01 17 43190906 43190906 C T PLCD3 Silent p.G631G 0.17 TCGA-2W-A8YY-01 17 43198399 43198399 C T PLCD3 Missense_Mutation p.A142T 0.50 tolerated(0.07) benign(0.007) TCGA-2W-A8YY-01 17 43213389 43213389 A G ACBD4 Intron 0.33 TCGA-2W-A8YY-01 17 43221121 43221121 C T ACBD4 3'UTR 0.53 TCGA-2W-A8YY-01 17 43228590 43228590 C T HEXIM1 3'UTR 0.49 TCGA-2W-A8YY-01 17 43247131 43247131 G A HEXIM2 Missense_Mutation p.M272I 0.72 tolerated(0.11) benign(0.113) TCGA-2W-A8YY-01 17 43313523 43313523 G A FMNL1 Missense_Mutation p.R212K 0.41 tolerated(0.1) unknown(0) TCGA-2W-A8YY-01 17 43341787 43341787 G A SPATA32 5'Flank 0.50 TCGA-2W-A8YY-01 17 43472600 43472600 G A ARHGAP27 3'UTR 0.53 TCGA-2W-A8YY-01 17 43473377 43473377 C T ARHGAP27 Silent p.S445S 0.40 TCGA-2W-A8YY-01 17 43507010 43507010 C T ARHGAP27 5'Flank 0.36 TCGA-2W-A8YY-01 17 43585610 43585610 C G LRRC37A4P Intron 0.20 TCGA-2W-A8YY-01 17 43713684 43713684 G A CRHR1-IT1 RNA 0.38 TCGA-2W-A8YY-01 17 4389636 4389636 C T SPNS3 Intron 0.38 TCGA-2W-A8YY-01 17 43923216 43923216 G A SPPL2C Missense_Mutation p.S315N 0.50 tolerated(0.61) benign(0.003) TCGA-2W-A8YY-01 17 44117070 44117070 G A KANSL1 Missense_Mutation p.A734V 0.42 tolerated(0.28) benign(0.104) TCGA-2W-A8YY-01 17 44249479 44249479 C T KANSL1 Missense_Mutation p.A11T 0.24 deleterious(0) unknown(0) TCGA-2W-A8YY-01 17 44269888 44269888 G A KANSL1 5'UTR 0.14 TCGA-2W-A8YY-01 17 4428451 4428451 C T SPNS2 Missense_Mutation p.S179L 0.42 deleterious(0.03) probably_damaging(0.992) TCGA-2W-A8YY-01 17 4451345 4451345 G A MYBBP1A Nonsense_Mutation p.Q578* 0.36 TCGA-2W-A8YY-01 17 4455269 4455269 C T MYBBP1A Missense_Mutation p.G310D 0.40 deleterious(0.02) possibly_damaging(0.493) TCGA-2W-A8YY-01 17 44626386 44626386 C T LRRC37A2 Missense_Mutation p.T1294M 0.20 deleterious(0.01) benign(0.379) TCGA-2W-A8YY-01 17 44846085 44846085 C T WNT3 Silent p.A223A 0.23 TCGA-2W-A8YY-01 17 44847372 44847372 C T WNT3 Missense_Mutation p.G122D 0.11 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 44952554 44952554 A T WNT9B Missense_Mutation p.E141V 0.28 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 4511133 4511133 G A SMTNL2 3'UTR 0.48 TCGA-2W-A8YY-01 17 45214630 45214630 C T CDC27 Missense_Mutation p.A607T 0.13 tolerated(0.3) possibly_damaging(0.761) TCGA-2W-A8YY-01 17 45360835 45360835 C T ITGB3 Missense_Mutation p.P94L 0.42 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 17 45699348 45699348 G A NPEPPS 3'UTR 0.37 TCGA-2W-A8YY-01 17 45745774 45745774 C T KPNB1 Nonsense_Mutation p.Q408* 0.44 TCGA-2W-A8YY-01 17 4576243 4576243 G A PELP1 Silent p.G681G 0.43 TCGA-2W-A8YY-01 17 4578632 4578632 C T PELP1 Missense_Mutation p.R365Q 0.49 possibly_damaging(0.796) TCGA-2W-A8YY-01 17 45788660 45788660 G T TBKBP1 3'UTR 0.21 TCGA-2W-A8YY-01 17 45891102 45891102 G A OSBPL7 Missense_Mutation p.R484C 0.25 deleterious(0) probably_damaging(0.937) TCGA-2W-A8YY-01 17 45895691 45895691 C T OSBPL7 Missense_Mutation p.R181Q 0.38 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 17 45924908 45924908 C T SP6 Silent p.T296T 0.33 TCGA-2W-A8YY-01 17 45992756 45992756 C T SP2 Splice_Site p.X28_splice 0.35 TCGA-2W-A8YY-01 17 46059000 46059000 G A CDK5RAP3 3'UTR 0.40 TCGA-2W-A8YY-01 17 46103726 46103726 G A COPZ2 3'UTR 0.34 TCGA-2W-A8YY-01 17 46128759 46128759 C A NFE2L1 Missense_Mutation p.F93L 0.50 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 17 46134840 46134840 T C NFE2L1 Silent p.D316D 0.19 TCGA-2W-A8YY-01 17 46154355 46154355 T - CBX1 Frame_Shift_Del p.K4Nfs*11 0.28 TCGA-2W-A8YY-01 17 46190705 46190705 C T SNX11 Missense_Mutation p.R58C 0.43 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 17 4648640 4648640 G A ZMYND15 Missense_Mutation p.R684H 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-2W-A8YY-01 17 46626857 46626857 G T HOXB3 3'UTR 0.33 TCGA-2W-A8YY-01 17 46627826 46627826 G A HOXB3 Missense_Mutation p.A389V 0.09 deleterious(0.01) benign(0.262) TCGA-2W-A8YY-01 17 46627943 46627943 G A HOXB3 Missense_Mutation p.P350L 0.23 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 17 46673975 46673975 G A HOXB6 Silent p.L159L 0.20 TCGA-2W-A8YY-01 17 46688174 46688174 G A HOXB7 Missense_Mutation p.S36F 0.11 deleterious(0.01) possibly_damaging(0.808) TCGA-2W-A8YY-01 17 46700475 46700475 C T HOXB9 Silent p.L180L 0.44 TCGA-2W-A8YY-01 17 46805506 46805506 C T HOXB13 Silent p.Q150Q 0.34 TCGA-2W-A8YY-01 17 4684157 4684157 G A TM4SF5 Missense_Mutation p.R84H 0.31 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 17 4688922 4688922 C T VMO1 Missense_Mutation p.R115H 0.57 deleterious(0.04) possibly_damaging(0.677) TCGA-2W-A8YY-01 17 4693229 4693229 C G GLTPD2 Missense_Mutation p.R172G 0.26 tolerated(0.16) benign(0.027) TCGA-2W-A8YY-01 17 46973152 46973152 G A ATP5G1 3'UTR 0.44 TCGA-2W-A8YY-01 17 46988214 46988214 T C UBE2Z Missense_Mutation p.V121A 0.33 deleterious(0.03) possibly_damaging(0.867) TCGA-2W-A8YY-01 17 47006313 47006313 A G UBE2Z 3'UTR 0.33 TCGA-2W-A8YY-01 17 4721303 4721303 C T PLD2 Nonsense_Mutation p.R608* 0.57 TCGA-2W-A8YY-01 17 47218641 47218641 T C B4GALNT2 Missense_Mutation p.V76A 0.44 tolerated(0.06) possibly_damaging(0.539) TCGA-2W-A8YY-01 17 47300892 47300892 C T PHOSPHO1 3'UTR 0.18 TCGA-2W-A8YY-01 17 47394394 47394394 C T ZNF652 Missense_Mutation p.A232T 0.56 deleterious(0.01) benign(0.079) TCGA-2W-A8YY-01 17 47394929 47394929 C T ZNF652 Silent p.R53R 0.19 TCGA-2W-A8YY-01 17 47486737 47486737 G A PHB Missense_Mutation p.R117C 0.40 deleterious(0.02) benign(0.04) TCGA-2W-A8YY-01 17 47590626 47590626 C T NGFR 3'UTR 0.46 TCGA-2W-A8YY-01 17 47590758 47590758 G A NGFR 3'UTR 0.38 TCGA-2W-A8YY-01 17 47653564 47653564 C T NXPH3 5'UTR 0.36 TCGA-2W-A8YY-01 17 47656034 47656034 C T NXPH3 Missense_Mutation p.P44L 0.41 tolerated(0.08) benign(0.007) TCGA-2W-A8YY-01 17 47696461 47696461 C T SPOP Missense_Mutation p.R121Q 0.38 tolerated(0.17) probably_damaging(0.989) TCGA-2W-A8YY-01 17 47787742 47787743 - A FAM117A 3'UTR 0.26 TCGA-2W-A8YY-01 17 47810017 47810017 G A FAM117A Missense_Mutation p.R88C 0.15 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 17 4784509 4784509 C T MINK1 Missense_Mutation p.A88V 0.08 deleterious(0.02) possibly_damaging(0.82) TCGA-2W-A8YY-01 17 4789868 4789868 G A MINK1 Missense_Mutation p.R299H 0.44 deleterious(0.05) benign(0.381) TCGA-2W-A8YY-01 17 47906390 47906390 C T KAT7 3'UTR 0.44 TCGA-2W-A8YY-01 17 4793038 4793038 C T MINK1 Missense_Mutation p.R443W 0.32 deleterious(0) possibly_damaging(0.689) TCGA-2W-A8YY-01 17 4794923 4794923 G A MINK1 Missense_Mutation p.R638H 0.08 deleterious(0) probably_damaging(0.925) TCGA-2W-A8YY-01 17 4794996 4794996 C T MINK1 Silent p.N662N 0.08 TCGA-2W-A8YY-01 17 48068198 48068198 G A DLX3 3'UTR 0.31 TCGA-2W-A8YY-01 17 48072186 48072186 C T DLX3 Silent p.T59T 0.38 TCGA-2W-A8YY-01 17 48145650 48145650 C T ITGA3 Silent p.P215P 0.47 TCGA-2W-A8YY-01 17 48186076 48186076 C T PDK2 Missense_Mutation p.T321M 0.36 deleterious(0) probably_damaging(0.92) TCGA-2W-A8YY-01 17 48248018 48248018 C T SGCA Missense_Mutation p.A325V 0.42 tolerated(0.18) benign(0.008) TCGA-2W-A8YY-01 17 48258156 48258156 G A SGCA 3'Flank 0.42 TCGA-2W-A8YY-01 17 48264274 48264274 C T COL1A1 Missense_Mutation p.G1181S 0.34 unknown(0) TCGA-2W-A8YY-01 17 48271329 48271329 C T COL1A1 Missense_Mutation p.G581E 0.44 unknown(0) TCGA-2W-A8YY-01 17 48272620 48272620 G A COL1A1 Silent p.G424G 0.41 TCGA-2W-A8YY-01 17 48453092 48453092 A G EME1 Missense_Mutation p.T175A 0.46 tolerated(0.72) benign(0.008) TCGA-2W-A8YY-01 17 48465441 48465441 C T LRRC59 Missense_Mutation p.R161Q 0.21 tolerated(0.18) benign(0.033) TCGA-2W-A8YY-01 17 48540879 48540879 G A ACSF2 Missense_Mutation p.G338S 0.09 tolerated(0.15) possibly_damaging(0.562) TCGA-2W-A8YY-01 17 48542708 48542708 C T CHAD Missense_Mutation p.R344H 0.12 deleterious(0.02) possibly_damaging(0.607) TCGA-2W-A8YY-01 17 48543190 48543190 G A CHAD Silent p.H272H 0.08 TCGA-2W-A8YY-01 17 48546086 48546086 T C CHAD Missense_Mutation p.H30R 0.41 tolerated(0.28) probably_damaging(0.966) TCGA-2W-A8YY-01 17 4857018 4857018 G A ENO3 Missense_Mutation p.A108T 0.40 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 17 4858439 4858439 C T ENO3 Missense_Mutation p.P172S 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-2W-A8YY-01 17 48614436 48614436 C T EPN3 Silent p.G173G 0.32 TCGA-2W-A8YY-01 17 48615453 48615453 A G EPN3 Silent p.S192S 0.45 TCGA-2W-A8YY-01 17 48615529 48615529 C T EPN3 Missense_Mutation p.L218F 0.20 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 48627923 48627923 C T SPATA20 Silent p.D375D 0.49 TCGA-2W-A8YY-01 17 48628576 48628576 G A SPATA20 Intron 0.24 TCGA-2W-A8YY-01 17 48652909 48652909 C T CACNA1G Silent p.G382G 0.29 TCGA-2W-A8YY-01 17 48680413 48680413 A G CACNA1G Missense_Mutation p.Y1341C 0.24 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 17 48703788 48703788 C T CACNA1G Silent p.I2270I 0.38 TCGA-2W-A8YY-01 17 48734463 48734463 G A ABCC3 Silent p.G135G 0.23 TCGA-2W-A8YY-01 17 48744941 48744941 G A ABCC3 Silent p.S486S 0.23 TCGA-2W-A8YY-01 17 48755478 48755478 C T ABCC3 Silent p.F1201F 0.45 TCGA-2W-A8YY-01 17 48828189 48828189 G A LUC7L3 3'UTR 0.24 TCGA-2W-A8YY-01 17 4883833 4883833 T C CAMTA2 Missense_Mutation p.T285A 0.39 tolerated_low_confidence(0.37) benign(0.002) TCGA-2W-A8YY-01 17 48913399 48913399 C T WFIKKN2 Missense_Mutation p.A34V 0.38 tolerated(0.15) benign(0.006) TCGA-2W-A8YY-01 17 4923308 4923308 C T KIF1C Missense_Mutation p.P562S 0.32 deleterious(0.01) probably_damaging(0.96) TCGA-2W-A8YY-01 17 49237383 49237383 G T NME1 Missense_Mutation p.D82Y 0.50 deleterious(0) possibly_damaging(0.889) TCGA-2W-A8YY-01 17 49244306 49244306 A C NME1-NME2 Missense_Mutation p.K154Q 0.48 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 17 4936869 4936869 A C SLC52A1 Missense_Mutation p.C305W 0.50 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 49708185 49708185 T C CA10 3'UTR 0.28 TCGA-2W-A8YY-01 17 49708264 49708264 G - CA10 3'UTR 0.25 TCGA-2W-A8YY-01 17 4996068 4996068 T C ZFP3 Silent p.C423C 0.10 TCGA-2W-A8YY-01 17 4997273 4997273 C T ZFP3 3'UTR 0.30 TCGA-2W-A8YY-01 17 4998659 4998659 G A ZFP3 3'UTR 0.46 TCGA-2W-A8YY-01 17 5009148 5009148 C T ZNF232 Missense_Mutation p.V436I 0.31 tolerated(1) benign(0.198) TCGA-2W-A8YY-01 17 5009518 5009518 G T ZNF232 Missense_Mutation p.F312L 0.40 deleterious(0.02) benign(0.19) TCGA-2W-A8YY-01 17 5023967 5023967 A G USP6 5'UTR 0.26 TCGA-2W-A8YY-01 17 5039994 5039994 G A USP6 Missense_Mutation p.V242I 0.10 deleterious_low_confidence(0.02) benign(0.299) TCGA-2W-A8YY-01 17 5049450 5049450 T C USP6 Missense_Mutation p.V767A 0.37 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-2W-A8YY-01 17 5077140 5077140 A C USP6 3'UTR 0.40 TCGA-2W-A8YY-01 17 5087176 5087176 T C ZNF594 Missense_Mutation p.T126A 0.28 deleterious(0.04) probably_damaging(0.97) TCGA-2W-A8YY-01 17 5290059 5290059 G A NUP88 Nonsense_Mutation p.R711* 0.39 TCGA-2W-A8YY-01 17 53016373 53016373 G T TOM1L1 Missense_Mutation p.E374D 0.41 tolerated(0.07) benign(0.013) TCGA-2W-A8YY-01 17 5308494 5308494 A G NUP88 Silent p.Y309Y 0.27 TCGA-2W-A8YY-01 17 5336721 5336721 G A C1QBP Silent p.D197D 0.10 TCGA-2W-A8YY-01 17 53392779 53392779 C T HLF Missense_Mutation p.R215C 0.08 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 53398188 53398188 G A HLF Missense_Mutation p.G279D 0.39 deleterious(0) possibly_damaging(0.662) TCGA-2W-A8YY-01 17 53398906 53398906 T C HLF 3'UTR 0.26 TCGA-2W-A8YY-01 17 53471807 53471807 G A MMD Missense_Mutation p.P202L 0.34 deleterious(0.02) possibly_damaging(0.766) TCGA-2W-A8YY-01 17 5347654 5347654 G A DHX33 Silent p.C665C 0.47 TCGA-2W-A8YY-01 17 53797392 53797392 C T TMEM100 3'UTR 0.35 TCGA-2W-A8YY-01 17 5433807 5433807 G T NLRP1 Missense_Mutation p.L1172I 0.41 tolerated(0.05) possibly_damaging(0.817) TCGA-2W-A8YY-01 17 54450057 54450057 G A ANKFN1 Missense_Mutation p.A221T 0.17 deleterious(0.02) benign(0.02) TCGA-2W-A8YY-01 17 55184306 55184306 G A AKAP1 Missense_Mutation p.S494N 0.28 tolerated(0.72) benign(0.001) TCGA-2W-A8YY-01 17 55189877 55189877 G A AKAP1 Silent p.A667A 0.29 TCGA-2W-A8YY-01 17 55339535 55339535 T C MSI2 Silent p.P98P 0.30 TCGA-2W-A8YY-01 17 55693418 55693418 G A MSI2 Missense_Mutation p.A209T 0.36 tolerated(0.12) benign(0.006) TCGA-2W-A8YY-01 17 55752388 55752388 C T MSI2 Silent p.V282V 0.33 TCGA-2W-A8YY-01 17 55950210 55950210 C T CUEDC1 Missense_Mutation p.A200T 0.38 tolerated(0.59) benign(0.001) TCGA-2W-A8YY-01 17 56082633 56082633 G A SRSF1 3'UTR 0.32 TCGA-2W-A8YY-01 17 56166532 56166532 G A DYNLL2 Nonsense_Mutation p.W54* 0.35 TCGA-2W-A8YY-01 17 56233238 56233238 A G OR4D1 Missense_Mutation p.T242A 0.26 tolerated(0.81) benign(0.12) TCGA-2W-A8YY-01 17 56247207 56247207 G A OR4D2 Missense_Mutation p.R64Q 0.45 tolerated(0.39) benign(0.024) TCGA-2W-A8YY-01 17 56271376 56271376 G A EPX Missense_Mutation p.A173T 0.33 deleterious(0.01) probably_damaging(0.987) TCGA-2W-A8YY-01 17 56355263 56355263 G A MPO Silent p.L377L 0.40 TCGA-2W-A8YY-01 17 56381697 56381697 A G BZRAP1 Splice_Site 0.33 TCGA-2W-A8YY-01 17 56389260 56389260 G A BZRAP1 Silent p.L974L 0.39 TCGA-2W-A8YY-01 17 56389372 56389372 G A BZRAP1 Missense_Mutation p.P937L 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 56389555 56389555 G A BZRAP1 Missense_Mutation p.A876V 0.39 tolerated(0.32) benign(0.002) TCGA-2W-A8YY-01 17 56389688 56389688 G A BZRAP1 Nonsense_Mutation p.R832* 0.11 TCGA-2W-A8YY-01 17 56399758 56399758 C T BZRAP1 Missense_Mutation p.A445T 0.30 deleterious(0.03) benign(0.128) TCGA-2W-A8YY-01 17 56435483 56435483 G A RNF43 Missense_Mutation p.R552C 0.47 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-2W-A8YY-01 17 56435979 56435979 C G RNF43 Silent p.R386R 0.14 TCGA-2W-A8YY-01 17 56440737 56440737 C A RNF43 Missense_Mutation p.V161L 0.15 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 17 56498447 56498447 G A HSF5 3'UTR 0.38 TCGA-2W-A8YY-01 17 56557346 56557346 A G HSF5 Missense_Mutation p.V278A 0.45 tolerated(0.07) benign(0.114) TCGA-2W-A8YY-01 17 56567784 56567785 - A MTMR4 3'UTR 0.37 TCGA-2W-A8YY-01 17 56572338 56572338 G T MTMR4 Nonsense_Mutation p.C1055* 0.55 TCGA-2W-A8YY-01 17 56573385 56573385 A G MTMR4 Silent p.N706N 0.38 TCGA-2W-A8YY-01 17 56582237 56582237 C T MTMR4 Missense_Mutation p.R401Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 56588872 56588872 C T MTMR4 Missense_Mutation p.V71I 0.23 tolerated(0.1) probably_damaging(0.989) TCGA-2W-A8YY-01 17 56597783 56597783 C T SEPT4 3'UTR 0.34 TCGA-2W-A8YY-01 17 56620176 56620176 A C C17orf47 Missense_Mutation p.L458V 0.34 tolerated(0.19) benign(0.024) TCGA-2W-A8YY-01 17 56621636 56621636 T C C17orf47 5'UTR 0.46 TCGA-2W-A8YY-01 17 57047012 57047012 C T PPM1E Missense_Mutation p.P299L 0.36 tolerated(0.22) benign(0.255) TCGA-2W-A8YY-01 17 57058220 57058220 A G PPM1E Missense_Mutation p.K699R 0.31 tolerated_low_confidence(0.23) benign(0.006) TCGA-2W-A8YY-01 17 57466752 57466752 C T YPEL2 Nonsense_Mutation p.R65* 0.42 TCGA-2W-A8YY-01 17 57476664 57476664 C T YPEL2 3'UTR 0.53 TCGA-2W-A8YY-01 17 57776815 57776815 G A PTRH2 5'UTR 0.37 TCGA-2W-A8YY-01 17 58008986 58008986 T C RPS6KB1 Silent p.F197F 0.38 TCGA-2W-A8YY-01 17 58026840 58026840 T - RPS6KB1 3'UTR 0.22 TCGA-2W-A8YY-01 17 58123477 58123477 A G HEATR6 Silent p.I961I 0.39 TCGA-2W-A8YY-01 17 58137347 58137347 G A HEATR6 Silent p.S509S 0.50 TCGA-2W-A8YY-01 17 58153537 58153537 A G HEATR6 Missense_Mutation p.V94A 0.19 deleterious(0) possibly_damaging(0.449) TCGA-2W-A8YY-01 17 58292120 58292120 G A USP32 Missense_Mutation p.P628L 0.22 tolerated(0.06) possibly_damaging(0.735) TCGA-2W-A8YY-01 17 58511559 58511559 G A C17orf64 3'Flank 0.36 TCGA-2W-A8YY-01 17 58521981 58521981 G T APPBP2 3'UTR 0.30 TCGA-2W-A8YY-01 17 59155853 59155853 G A BCAS3 Missense_Mutation p.D779N 0.27 tolerated(0.1) possibly_damaging(0.87) TCGA-2W-A8YY-01 17 59445848 59445848 C T BCAS3 Silent p.S877S 0.14 TCGA-2W-A8YY-01 17 59482967 59482967 G A TBX2 Missense_Mutation p.G486S 0.48 deleterious(0.03) benign(0.206) TCGA-2W-A8YY-01 17 59483024 59483024 G A TBX2 Missense_Mutation p.A505T 0.46 tolerated(0.27) benign(0.392) TCGA-2W-A8YY-01 17 59483099 59483099 G A TBX2 Missense_Mutation p.A530T 0.41 tolerated(0.52) benign(0) TCGA-2W-A8YY-01 17 59543214 59543214 G T TBX4 Missense_Mutation p.G106C 0.51 deleterious(0) probably_damaging(0.956) TCGA-2W-A8YY-01 17 59668091 59668091 C T NACA2 Missense_Mutation p.G151R 0.40 tolerated(0.06) benign(0.011) TCGA-2W-A8YY-01 17 5991404 5991404 C T WSCD1 Silent p.C174C 0.11 TCGA-2W-A8YY-01 17 59944964 59944964 T C INTS2 Missense_Mutation p.E1190G 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 60003927 60003927 C T INTS2 Missense_Mutation p.A35T 0.29 deleterious(0.03) probably_damaging(0.98) TCGA-2W-A8YY-01 17 60021305 60021305 C T MED13 3'UTR 0.37 TCGA-2W-A8YY-01 17 60038242 60038242 G A MED13 Silent p.I1822I 0.30 TCGA-2W-A8YY-01 17 60059814 60059814 A T MED13 Missense_Mutation p.L1184I 0.44 tolerated(0.39) benign(0.002) TCGA-2W-A8YY-01 17 60088446 60088446 G A MED13 Missense_Mutation p.H478Y 0.36 deleterious(0.02) probably_damaging(0.993) TCGA-2W-A8YY-01 17 60598179 60598179 G A TLK2 Missense_Mutation p.G43R 0.37 deleterious_low_confidence(0) possibly_damaging(0.54) TCGA-2W-A8YY-01 17 60631050 60631050 T C TLK2 Silent p.S218S 0.30 TCGA-2W-A8YY-01 17 60650729 60650729 G A TLK2 Splice_Site p.X374_splice 0.35 TCGA-2W-A8YY-01 17 6069 6069 G A DOC2B Missense_Mutation p.R289W 0.55 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 60749094 60749094 G A MRC2 Missense_Mutation p.R401H 0.18 tolerated(0.09) benign(0.022) TCGA-2W-A8YY-01 17 60749514 60749514 G T MRC2 Splice_Site p.X487_splice 0.12 TCGA-2W-A8YY-01 17 60766223 60766223 C T MRC2 Missense_Mutation p.A1079V 0.10 tolerated(0.99) benign(0.009) TCGA-2W-A8YY-01 17 60788611 60788611 T C MARCH10 Missense_Mutation p.N770S 0.41 tolerated(0.76) benign(0.002) TCGA-2W-A8YY-01 17 61278247 61278247 C T TANC2 Missense_Mutation p.A159V 0.32 tolerated(0.31) benign(0.007) TCGA-2W-A8YY-01 17 61498312 61498312 C T TANC2 Missense_Mutation p.R1657W 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.791) TCGA-2W-A8YY-01 17 61557164 61557164 C T ACE Silent p.Y182Y 0.46 TCGA-2W-A8YY-01 17 61564359 61564359 C A ACE Missense_Mutation p.L744M 0.44 deleterious(0.03) possibly_damaging(0.697) TCGA-2W-A8YY-01 17 61596341 61596341 C T ACE 3'UTR 0.31 TCGA-2W-A8YY-01 17 61607463 61607463 C T KCNH6 Missense_Mutation p.R107C 0.42 tolerated(0.18) probably_damaging(0.985) TCGA-2W-A8YY-01 17 61613572 61613572 A T KCNH6 Intron 0.22 TCGA-2W-A8YY-01 17 61666833 61666833 T C DCAF7 3'UTR 0.50 TCGA-2W-A8YY-01 17 61685296 61685296 C T TACO1 Silent p.A276A 0.36 TCGA-2W-A8YY-01 17 61772794 61772794 G A MAP3K3 3'UTR 0.50 TCGA-2W-A8YY-01 17 61829288 61829288 A C CCDC47 Intron 0.09 TCGA-2W-A8YY-01 17 61843365 61843365 G A CCDC47 Silent p.V57V 0.31 TCGA-2W-A8YY-01 17 61898421 61898421 G A FTSJ3 Silent p.D647D 0.30 TCGA-2W-A8YY-01 17 61950685 61950685 G A CSH2 Silent p.L9L 0.09 TCGA-2W-A8YY-01 17 61958142 61958142 G A GH2 Missense_Mutation p.T149M 0.45 tolerated(0.08) probably_damaging(0.91) TCGA-2W-A8YY-01 17 61972409 61972409 G T CSH1 Silent p.R209R 0.09 TCGA-2W-A8YY-01 17 61972804 61972804 G A CSH1 Intron 0.46 TCGA-2W-A8YY-01 17 62007575 62007575 C T CD79B Missense_Mutation p.E98K 0.44 tolerated(0.34) benign(0.039) TCGA-2W-A8YY-01 17 62009612 62009612 G A CD79B Silent p.L4L 0.32 TCGA-2W-A8YY-01 17 62038612 62038612 C A SCN4A Missense_Mutation p.A596S 0.41 deleterious(0.03) possibly_damaging(0.725) TCGA-2W-A8YY-01 17 62041054 62041054 G A SCN4A Silent p.S528S 0.45 TCGA-2W-A8YY-01 17 62045666 62045666 C T SCN4A Silent p.S251S 0.35 TCGA-2W-A8YY-01 17 62082538 62082538 T C ICAM2 Missense_Mutation p.D86G 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 17 62122246 62122246 C A ERN1 Missense_Mutation p.D899Y 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 62122766 62122766 A G ERN1 Missense_Mutation p.V869A 0.53 deleterious(0) possibly_damaging(0.66) TCGA-2W-A8YY-01 17 62125279 62125279 G A ERN1 Missense_Mutation p.A823V 0.09 deleterious(0) possibly_damaging(0.801) TCGA-2W-A8YY-01 17 62489028 62489028 G A POLG2 Nonsense_Mutation p.R225* 0.11 TCGA-2W-A8YY-01 17 62530774 62530774 C T CEP95 Silent p.I663I 0.52 TCGA-2W-A8YY-01 17 62796989 62796989 C T PLEKHM1P RNA 0.29 TCGA-2W-A8YY-01 17 62892824 62892824 A C LRRC37A3 Nonsense_Mutation p.Y184* 0.33 TCGA-2W-A8YY-01 17 62893086 62893086 G A LRRC37A3 Missense_Mutation p.A97V 0.13 tolerated(0.21) benign(0.041) TCGA-2W-A8YY-01 17 6329899 6329899 C T AIPL1 Intron 0.34 TCGA-2W-A8YY-01 17 63530068 63530068 G A AXIN2 Silent p.G789G 0.16 TCGA-2W-A8YY-01 17 6358851 6358851 T C PITPNM3 Missense_Mutation p.H911R 0.40 tolerated(0.07) benign(0.171) TCGA-2W-A8YY-01 17 6377833 6377833 C T PITPNM3 Missense_Mutation p.D393N 0.27 deleterious(0.01) benign(0.009) TCGA-2W-A8YY-01 17 63848009 63848009 G A CEP112 Silent p.V769V 0.36 TCGA-2W-A8YY-01 17 64179375 64179375 C T CEP112 Missense_Mutation p.A15T 0.38 tolerated(0.35) possibly_damaging(0.671) TCGA-2W-A8YY-01 17 644588 644588 G A FAM57A Silent p.T184T 0.31 TCGA-2W-A8YY-01 17 644830 644830 G A FAM57A 3'UTR 0.34 TCGA-2W-A8YY-01 17 64800030 64800030 C T PRKCA Nonsense_Mutation p.R632* 0.38 TCGA-2W-A8YY-01 17 649639 649639 G A GEMIN4 Silent p.S548S 0.26 TCGA-2W-A8YY-01 17 65067178 65067178 A C HELZ 3'UTR 0.36 TCGA-2W-A8YY-01 17 65068001 65068001 T G HELZ 3'UTR 0.45 TCGA-2W-A8YY-01 17 65104657 65104657 A G HELZ Missense_Mutation p.W1559R 0.62 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 17 65144705 65144705 G A HELZ Silent p.R867R 0.18 TCGA-2W-A8YY-01 17 65157116 65157116 C T HELZ Missense_Mutation p.A658T 0.39 tolerated(0.23) benign(0.017) TCGA-2W-A8YY-01 17 6544388 6544388 C A TXNDC17 5'UTR 0.56 TCGA-2W-A8YY-01 17 65900914 65900914 C T BPTF Missense_Mutation p.P924S 0.37 benign(0.237) TCGA-2W-A8YY-01 17 65955690 65955690 G A BPTF Missense_Mutation p.E2654K 0.40 probably_damaging(0.979) TCGA-2W-A8YY-01 17 6604366 6604366 G T SLC13A5 Missense_Mutation p.L266M 0.33 deleterious(0.03) benign(0.089) TCGA-2W-A8YY-01 17 6606325 6606325 G A SLC13A5 Missense_Mutation p.T227M 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 66274329 66274329 A C SLC16A6 Missense_Mutation p.F45V 0.26 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 66303602 66303602 G A ARSG 5'UTR 0.40 TCGA-2W-A8YY-01 17 66416491 66416491 G A ARSG Missense_Mutation p.V489I 0.28 tolerated(0.52) benign(0.001) TCGA-2W-A8YY-01 17 66899015 66899015 A G ABCA8 Missense_Mutation p.L828S 0.37 deleterious(0) possibly_damaging(0.555) TCGA-2W-A8YY-01 17 66925333 66925333 A G ABCA8 Missense_Mutation p.F328L 0.10 tolerated(0.62) benign(0.029) TCGA-2W-A8YY-01 17 67085662 67085662 C A ABCA6 Nonsense_Mutation p.E1184* 0.32 TCGA-2W-A8YY-01 17 67107017 67107017 C T ABCA6 Missense_Mutation p.D733N 0.42 tolerated(0.29) possibly_damaging(0.887) TCGA-2W-A8YY-01 17 67218733 67218733 C T ABCA10 Missense_Mutation p.R47H 0.34 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 17 673172 673172 G A GLOD4 Silent p.V256V 0.45 TCGA-2W-A8YY-01 17 67501925 67501925 G T MAP2K6 Missense_Mutation p.K7N 0.41 deleterious(0.03) benign(0.082) TCGA-2W-A8YY-01 17 67522794 67522794 G A MAP2K6 Silent p.S275S 0.33 TCGA-2W-A8YY-01 17 679015 679015 C A GLOD4 Missense_Mutation p.D136Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 17 6797738 6797738 G A AC027763.2 Intron 0.26 TCGA-2W-A8YY-01 17 6798256 6798256 C T AC027763.2 Intron 0.33 TCGA-2W-A8YY-01 17 68129350 68129350 T C KCNJ16 Silent p.F374F 0.29 TCGA-2W-A8YY-01 17 68130048 68130048 G A KCNJ16 3'UTR 0.33 TCGA-2W-A8YY-01 17 68171433 68171433 C T KCNJ2 Silent p.L85L 0.31 TCGA-2W-A8YY-01 17 68171524 68171524 C T KCNJ2 Missense_Mutation p.A115V 0.40 tolerated(0.28) benign(0.006) TCGA-2W-A8YY-01 17 68173590 68173590 C T KCNJ2 3'UTR 0.34 TCGA-2W-A8YY-01 17 68174115 68174115 G A KCNJ2 3'UTR 0.38 TCGA-2W-A8YY-01 17 68176045 68176045 G A KCNJ2 3'UTR 0.34 TCGA-2W-A8YY-01 17 6919973 6919973 C T C17orf49 Silent p.A126A 0.11 TCGA-2W-A8YY-01 17 6927092 6927092 C T BCL6B Silent p.R34R 0.37 TCGA-2W-A8YY-01 17 6927161 6927161 C T BCL6B Silent p.I57I 0.29 TCGA-2W-A8YY-01 17 6930825 6930825 G A BCL6B Missense_Mutation p.D443N 0.41 deleterious(0) benign(0.052) TCGA-2W-A8YY-01 17 70117712 70117714 GAA - SOX9 In_Frame_Del p.K62del 0.39 TCGA-2W-A8YY-01 17 70119968 70119968 A G SOX9 Missense_Mutation p.T324A 0.33 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 17 704292 704292 G A NXN Missense_Mutation p.A402V 0.38 tolerated(0.12) possibly_damaging(0.779) TCGA-2W-A8YY-01 17 70642178 70642178 A G SLC39A11 3'UTR 0.33 TCGA-2W-A8YY-01 17 71197664 71197664 G A COG1 Silent p.V566V 0.30 TCGA-2W-A8YY-01 17 71205450 71205450 G T FAM104A 3'UTR 0.35 TCGA-2W-A8YY-01 17 71232570 71232570 A G C17orf80 Missense_Mutation p.M317V 0.41 tolerated(1) benign(0) TCGA-2W-A8YY-01 17 71238469 71238469 C T C17orf80 Missense_Mutation p.L534F 0.08 tolerated(0.16) benign(0.005) TCGA-2W-A8YY-01 17 7126059 7126059 C T ACADVL Missense_Mutation p.P341S 0.36 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 17 7127657 7127657 G A ACADVL Missense_Mutation p.S540N 0.37 tolerated(0.23) benign(0.006) TCGA-2W-A8YY-01 17 71282031 71282031 C T CDC42EP4 Silent p.A203A 0.38 TCGA-2W-A8YY-01 17 7130478 7130478 C T DVL2 Missense_Mutation p.V492I 0.25 deleterious(0.02) possibly_damaging(0.844) TCGA-2W-A8YY-01 17 71357915 71357915 G A SDK2 Missense_Mutation p.A1792V 0.41 tolerated(0.14) probably_damaging(0.928) TCGA-2W-A8YY-01 17 71380118 71380118 G A SDK2 Silent p.L1534L 0.26 TCGA-2W-A8YY-01 17 7139689 7139689 C T PHF23 Missense_Mutation p.R186Q 0.52 tolerated_low_confidence(0.05) possibly_damaging(0.885) TCGA-2W-A8YY-01 17 71412002 71412002 G A SDK2 Silent p.S772S 0.38 TCGA-2W-A8YY-01 17 71431777 71431777 G A SDK2 Missense_Mutation p.P336L 0.31 deleterious(0.01) benign(0.243) TCGA-2W-A8YY-01 17 71434257 71434257 G A SDK2 Silent p.D254D 0.38 TCGA-2W-A8YY-01 17 7188225 7188225 T C SLC2A4 Silent p.A329A 0.39 TCGA-2W-A8YY-01 17 7188435 7188435 G A SLC2A4 Missense_Mutation p.R350Q 0.45 deleterious(0.01) probably_damaging(0.984) TCGA-2W-A8YY-01 17 7194437 7194437 T G YBX2 Missense_Mutation p.E145A 0.52 deleterious(0) possibly_damaging(0.621) TCGA-2W-A8YY-01 17 7222523 7222523 C T NEURL4 Missense_Mutation p.R1177Q 0.47 tolerated(0.34) benign(0.001) TCGA-2W-A8YY-01 17 72240160 72240160 C A TTYH2 Missense_Mutation p.S259Y 0.39 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 17 72257963 72257963 C T TTYH2 3'UTR 0.30 TCGA-2W-A8YY-01 17 7226158 7226158 C T NEURL4 Missense_Mutation p.G874D 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 7230218 7230218 C A NEURL4 Nonsense_Mutation p.G302* 0.38 TCGA-2W-A8YY-01 17 7230493 7230493 A G NEURL4 Missense_Mutation p.S262P 0.09 tolerated(0.28) benign(0.001) TCGA-2W-A8YY-01 17 72324590 72324590 C T KIF19 Silent p.S22S 0.21 TCGA-2W-A8YY-01 17 72338843 72338843 C T KIF19 Silent p.A102A 0.45 TCGA-2W-A8YY-01 17 72351587 72351587 C T KIF19 3'UTR 0.46 TCGA-2W-A8YY-01 17 72356254 72356254 C T BTBD17 Silent p.A72A 0.14 TCGA-2W-A8YY-01 17 72357959 72357959 C T BTBD17 5'UTR 0.45 TCGA-2W-A8YY-01 17 72363839 72363839 C T GPR142 Silent p.S65S 0.55 TCGA-2W-A8YY-01 17 72428144 72428144 G A GPRC5C 5'UTR 0.09 TCGA-2W-A8YY-01 17 7250481 7250481 C T ACAP1 Silent p.C421C 0.41 TCGA-2W-A8YY-01 17 72589093 72589093 C T C17orf77 3'UTR 0.38 TCGA-2W-A8YY-01 17 72758195 72758195 T C SLC9A3R1 Silent p.S162S 0.46 TCGA-2W-A8YY-01 17 72842935 72842935 C T GRIN2C Missense_Mutation p.R709H 0.24 deleterious(0.01) probably_damaging(0.975) TCGA-2W-A8YY-01 17 72843476 72843476 C T GRIN2C Missense_Mutation p.D658N 0.39 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 17 7286796 7286796 G T TNK1 Missense_Mutation p.S96I 0.45 deleterious(0.02) benign(0.229) TCGA-2W-A8YY-01 17 7287876 7287876 T C TNK1 Missense_Mutation p.W314R 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 7287878 7287878 G A TNK1 Nonsense_Mutation p.W314* 0.34 TCGA-2W-A8YY-01 17 72915640 72915640 C T USH1G Missense_Mutation p.V431I 0.35 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 17 7291815 7291815 C A TNK1 Missense_Mutation p.A528D 0.44 tolerated(0.43) benign(0.007) TCGA-2W-A8YY-01 17 72937558 72937558 C T OTOP3 Silent p.N48N 0.41 TCGA-2W-A8YY-01 17 72947657 72947657 C T HID1 3'UTR 0.32 TCGA-2W-A8YY-01 17 73094212 73094212 C T SLC16A5 Silent p.G93G 0.27 TCGA-2W-A8YY-01 17 73096372 73096372 C T SLC16A5 Missense_Mutation p.P205L 0.46 tolerated(0.22) benign(0.031) TCGA-2W-A8YY-01 17 7319258 7319258 C T NLGN2 Missense_Mutation p.A489V 0.24 tolerated(0.1) benign(0.069) TCGA-2W-A8YY-01 17 73221256 73221256 A G NUP85 Missense_Mutation p.E219G 0.50 deleterious(0.04) benign(0.063) TCGA-2W-A8YY-01 17 73235878 73235878 C A GGA3 Missense_Mutation p.E525D 0.52 tolerated(0.2) benign(0.007) TCGA-2W-A8YY-01 17 7324799 7324799 C T SPEM1 Missense_Mutation p.R269W 0.34 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 17 73265551 73265551 C T MIF4GD Splice_Site p.X28_splice 0.42 TCGA-2W-A8YY-01 17 7348634 7348634 T G CHRNB1 Missense_Mutation p.F35C 0.41 deleterious(0.02) possibly_damaging(0.693) TCGA-2W-A8YY-01 17 73494786 73494786 C T KIAA0195 Silent p.A1270A 0.38 TCGA-2W-A8YY-01 17 73498338 73498338 C T CASKIN2 Silent p.T939T 0.26 TCGA-2W-A8YY-01 17 73500325 73500325 C T CASKIN2 Missense_Mutation p.V480M 0.37 tolerated(0.08) possibly_damaging(0.477) TCGA-2W-A8YY-01 17 73509886 73509886 A G CASKIN2 5'UTR 0.18 TCGA-2W-A8YY-01 17 73564564 73564564 C T LLGL2 Silent p.D348D 0.35 TCGA-2W-A8YY-01 17 73565137 73565137 C T LLGL2 Silent p.R467R 0.42 TCGA-2W-A8YY-01 17 73570694 73570694 C T LLGL2 Silent p.S1000S 0.10 TCGA-2W-A8YY-01 17 73612521 73612521 A G MYO15B 3'Flank 0.42 TCGA-2W-A8YY-01 17 73615490 73615490 G T MYO15B RNA 0.43 TCGA-2W-A8YY-01 17 73624396 73624396 A C RECQL5 Missense_Mutation p.F903V 0.28 tolerated(1) benign(0) TCGA-2W-A8YY-01 17 73625816 73625816 T C RECQL5 Missense_Mutation p.D640G 0.32 tolerated(0.17) benign(0.075) TCGA-2W-A8YY-01 17 73626769 73626769 G A RECQL5 Missense_Mutation p.R550W 0.30 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 17 73627684 73627684 C T RECQL5 Missense_Mutation p.D432N 0.18 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 17 7363026 7363026 C T ZBTB4 3'UTR 0.13 TCGA-2W-A8YY-01 17 73643848 73643848 A G SMIM6 3'UTR 0.41 TCGA-2W-A8YY-01 17 7366455 7366455 G A ZBTB4 Missense_Mutation p.R616C 0.33 probably_damaging(0.994) TCGA-2W-A8YY-01 17 73723339 73723339 C T ITGB4 Silent p.C48C 0.33 TCGA-2W-A8YY-01 17 73736071 73736071 G A ITGB4 Missense_Mutation p.V789M 0.15 tolerated(0.22) benign(0.004) TCGA-2W-A8YY-01 17 73754402 73754402 C T GALK1 Silent p.A332A 0.38 TCGA-2W-A8YY-01 17 73774005 73774005 C T H3F3B 3'UTR 0.47 TCGA-2W-A8YY-01 17 73812971 73812971 C T UNK Missense_Mutation p.P361L 0.28 tolerated(0.15) possibly_damaging(0.478) TCGA-2W-A8YY-01 17 73823962 73823962 G A UNC13D 3'UTR 0.50 TCGA-2W-A8YY-01 17 73826129 73826129 C T UNC13D Silent p.L978L 0.11 TCGA-2W-A8YY-01 17 73915810 73915810 G A FBF1 Missense_Mutation p.R678C 0.36 deleterious(0) possibly_damaging(0.736) TCGA-2W-A8YY-01 17 73942792 73942792 G A ACOX1 3'UTR 0.27 TCGA-2W-A8YY-01 17 7399887 7399887 C T POLR2A Silent p.F164F 0.35 TCGA-2W-A8YY-01 17 74003046 74003046 C T EVPL 3'UTR 0.50 TCGA-2W-A8YY-01 17 74003503 74003503 C T EVPL Missense_Mutation p.R1928Q 0.35 tolerated(0.63) benign(0.008) TCGA-2W-A8YY-01 17 74004744 74004744 C T EVPL Silent p.S1514S 0.51 TCGA-2W-A8YY-01 17 74018533 74018533 G A EVPL Silent p.I189I 0.35 TCGA-2W-A8YY-01 17 74042250 74042250 T C SRP68 Missense_Mutation p.T390A 0.38 tolerated(0.15) benign(0.142) TCGA-2W-A8YY-01 17 74072807 74072807 G A GALR2 Silent p.S153S 0.25 TCGA-2W-A8YY-01 17 74079821 74079821 C T EXOC7 Missense_Mutation p.V706M 0.24 tolerated(0.12) benign(0.095) TCGA-2W-A8YY-01 17 74082182 74082182 G A EXOC7 Missense_Mutation p.R543W 0.48 deleterious(0.01) probably_damaging(0.966) TCGA-2W-A8YY-01 17 74086444 74086444 G A EXOC7 Silent p.S340S 0.24 TCGA-2W-A8YY-01 17 74134073 74134073 A C FOXJ1 Silent p.A209A 0.67 TCGA-2W-A8YY-01 17 74141387 74141387 G A RNF157 Missense_Mutation p.R657W 0.50 tolerated_low_confidence(0.06) benign(0.002) TCGA-2W-A8YY-01 17 7415290 7415290 G A POLR2A Missense_Mutation p.R1421H 0.19 probably_damaging(0.999) TCGA-2W-A8YY-01 17 7415795 7415795 G A POLR2A Splice_Site p.X1498_splice 0.16 TCGA-2W-A8YY-01 17 74157965 74157965 G A RNF157 Missense_Mutation p.T304M 0.27 deleterious(0.01) probably_damaging(0.953) TCGA-2W-A8YY-01 17 7416201 7416201 C T POLR2A Missense_Mutation p.P1572L 0.39 benign(0.004) TCGA-2W-A8YY-01 17 7416391 7416391 G A POLR2A Missense_Mutation p.R1603H 0.12 possibly_damaging(0.531) TCGA-2W-A8YY-01 17 7417826 7417826 C A POLR2A 3'UTR 0.31 TCGA-2W-A8YY-01 17 74273259 74273259 G A QRICH2 Silent p.I1584I 0.14 TCGA-2W-A8YY-01 17 74273281 74273281 C T QRICH2 Missense_Mutation p.G1577D 0.40 deleterious(0.01) probably_damaging(0.983) TCGA-2W-A8YY-01 17 74383066 74383066 G A SPHK1 Missense_Mutation p.R271Q 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 74385877 74385877 T - UBE2O 3'UTR 0.56 TCGA-2W-A8YY-01 17 74388166 74388166 G A UBE2O Missense_Mutation p.P992L 0.49 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 17 74394955 74394955 G A UBE2O Silent p.N582N 0.42 TCGA-2W-A8YY-01 17 74475320 74475321 - A RHBDF2 Frame_Shift_Ins p.E133Dfs*29 0.53 TCGA-2W-A8YY-01 17 7453497 7453497 C T TNFSF12 Missense_Mutation p.R90W 0.39 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-2W-A8YY-01 17 74536618 74536618 G A PRCD Missense_Mutation p.G36S 0.36 tolerated_low_confidence(0.12) benign(0.019) TCGA-2W-A8YY-01 17 74622155 74622155 G A ST6GALNAC1 Missense_Mutation p.R480W 0.28 benign(0.081) TCGA-2W-A8YY-01 17 7464210 7464210 G T TNFSF12-TNFSF13 3'UTR 0.45 TCGA-2W-A8YY-01 17 7466578 7466578 G A SENP3 Missense_Mutation p.R62H 0.33 deleterious_low_confidence(0.05) possibly_damaging(0.522) TCGA-2W-A8YY-01 17 74673663 74673663 G A MXRA7 3'UTR 0.43 TCGA-2W-A8YY-01 17 74681182 74681182 T C MXRA7 Missense_Mutation p.T158A 0.31 benign(0.047) TCGA-2W-A8YY-01 17 7468141 7468141 G T SENP3 Missense_Mutation p.Q305H 0.37 deleterious(0) possibly_damaging(0.549) TCGA-2W-A8YY-01 17 74684225 74684225 G A MXRA7 Missense_Mutation p.P126S 0.39 unknown(0) TCGA-2W-A8YY-01 17 74714716 74714716 G A JMJD6 Intron 0.21 TCGA-2W-A8YY-01 17 74731488 74731488 A G SRSF2 3'UTR 0.45 TCGA-2W-A8YY-01 17 74771115 74771115 G A MFSD11 Missense_Mutation p.R304H 0.37 deleterious(0.03) benign(0.033) TCGA-2W-A8YY-01 17 7478559 7478559 C T EIF4A1 Nonsense_Mutation p.R110* 0.32 TCGA-2W-A8YY-01 17 7479881 7479881 G A EIF4A1 Missense_Mutation p.A129T 0.44 deleterious(0.02) possibly_damaging(0.493) TCGA-2W-A8YY-01 17 7481371 7481371 G A EIF4A1 Intron 0.52 TCGA-2W-A8YY-01 17 7483519 7483519 G A CD68 Silent p.P147P 0.32 TCGA-2W-A8YY-01 17 74865160 74865160 G A MGAT5B 5'Flank 0.31 TCGA-2W-A8YY-01 17 74898651 74898651 C T MGAT5B Missense_Mutation p.A126V 0.44 tolerated(0.1) benign(0.012) TCGA-2W-A8YY-01 17 7490031 7490031 C T MPDU1 Silent p.F108F 0.27 TCGA-2W-A8YY-01 17 7491033 7491033 C T MPDU1 3'UTR 0.26 TCGA-2W-A8YY-01 17 7491775 7491775 G A SOX15 Missense_Mutation p.T208I 0.43 deleterious_low_confidence(0.01) benign(0.001) TCGA-2W-A8YY-01 17 74944128 74944128 T C MGAT5B Missense_Mutation p.S723P 0.44 deleterious(0.01) possibly_damaging(0.522) TCGA-2W-A8YY-01 17 75196681 75196681 A G SEC14L1 Missense_Mutation p.Y312C 0.39 tolerated(0.17) benign(0.022) TCGA-2W-A8YY-01 17 75209558 75209558 G A SEC14L1 Missense_Mutation p.G676S 0.36 tolerated(0.57) possibly_damaging(0.655) TCGA-2W-A8YY-01 17 7534979 7534979 G A SHBG Missense_Mutation p.A210T 0.47 tolerated(0.19) benign(0.002) TCGA-2W-A8YY-01 17 75471826 75471826 C T SEPT9 Intron 0.44 TCGA-2W-A8YY-01 17 7574030 7574030 G A TP53 Missense_Mutation p.R333C 0.38 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.49 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.45 TCGA-2W-A8YY-01 17 76045286 76045286 C T TNRC6C Missense_Mutation p.A48V 0.42 tolerated(0.98) benign(0.005) TCGA-2W-A8YY-01 17 76045706 76045706 A T TNRC6C Missense_Mutation p.N188I 0.43 deleterious(0) possibly_damaging(0.867) TCGA-2W-A8YY-01 17 76046577 76046577 C T TNRC6C Silent p.A478A 0.33 TCGA-2W-A8YY-01 17 76071287 76071287 C T TNRC6C Silent p.A993A 0.29 TCGA-2W-A8YY-01 17 76089710 76089710 C T TNRC6C Missense_Mutation p.P1388L 0.57 deleterious(0) possibly_damaging(0.863) TCGA-2W-A8YY-01 17 76117687 76117687 C T TMC6 Missense_Mutation p.A445T 0.53 tolerated(0.7) benign(0.003) TCGA-2W-A8YY-01 17 76134461 76134461 C T TMC8 Missense_Mutation p.S522L 0.33 tolerated(0.17) benign(0.002) TCGA-2W-A8YY-01 17 7614104 7614104 C T EFNB3 3'UTR 0.32 TCGA-2W-A8YY-01 17 76167797 76167797 A G SYNGR2 Intron 0.39 TCGA-2W-A8YY-01 17 76167812 76167812 C T SYNGR2 Intron 0.42 TCGA-2W-A8YY-01 17 76181247 76181247 C T TK1 Splice_Site p.X33_splice 0.41 TCGA-2W-A8YY-01 17 76198828 76198828 G A AFMID Missense_Mutation p.G102R 0.51 deleterious(0.04) probably_damaging(0.981) TCGA-2W-A8YY-01 17 76353020 76353020 G T SOCS3 3'UTR 0.33 TCGA-2W-A8YY-01 17 76354792 76354792 G A SOCS3 Missense_Mutation p.P129S 0.30 tolerated(0.35) benign(0.031) TCGA-2W-A8YY-01 17 76355259 76355259 G - SOCS3 5'UTR 0.46 TCGA-2W-A8YY-01 17 76400146 76400147 - T PGS1 Frame_Shift_Ins p.R460Mfs*29 0.20 TCGA-2W-A8YY-01 17 76422661 76422661 G A AC061992.1 Missense_Mutation p.G85S 0.20 unknown(0) TCGA-2W-A8YY-01 17 76425309 76425309 G A DNAH17 Missense_Mutation p.R4094C 0.38 probably_damaging(0.998) TCGA-2W-A8YY-01 17 76450649 76450649 G A DNAH17 Missense_Mutation p.R3423W 0.36 probably_damaging(0.999) TCGA-2W-A8YY-01 17 76451753 76451753 G T DNAH17 Missense_Mutation p.F3367L 0.49 benign(0) TCGA-2W-A8YY-01 17 76471363 76471363 G A DNAH17 Silent p.L2822L 0.33 TCGA-2W-A8YY-01 17 76495251 76495251 G A DNAH17-AS1 5'UTR 0.42 TCGA-2W-A8YY-01 17 76497363 76497363 G A DNAH17 Nonsense_Mutation p.R1782* 0.23 TCGA-2W-A8YY-01 17 76503374 76503374 C T DNAH17 Silent p.E1550E 0.27 TCGA-2W-A8YY-01 17 76562739 76562739 C T DNAH17 Missense_Mutation p.C509Y 0.37 benign(0.005) TCGA-2W-A8YY-01 17 7662386 7662386 G A DNAH2 Missense_Mutation p.D798N 0.35 benign(0.003) TCGA-2W-A8YY-01 17 7678157 7678157 C T DNAH2 Nonsense_Mutation p.R1528* 0.41 TCGA-2W-A8YY-01 17 76795028 76795028 C T USP36 Missense_Mutation p.V1068M 0.22 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 17 76803712 76803712 C T USP36 Missense_Mutation p.D472N 0.31 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 17 76818144 76818144 G A USP36 Intron 0.22 TCGA-2W-A8YY-01 17 76823323 76823323 G A USP36 Intron 0.32 TCGA-2W-A8YY-01 17 76849732 76849732 C T TIMP2 3'UTR 0.47 TCGA-2W-A8YY-01 17 76869986 76869986 G A TIMP2 Missense_Mutation p.A49V 0.37 tolerated(1) benign(0.009) TCGA-2W-A8YY-01 17 7689542 7689542 G A DNAH2 Missense_Mutation p.R2077H 0.50 probably_damaging(0.97) TCGA-2W-A8YY-01 17 7690245 7690245 T C DNAH2 Missense_Mutation p.F2166S 0.42 probably_damaging(1) TCGA-2W-A8YY-01 17 7696378 7696378 G A DNAH2 Missense_Mutation p.G2475D 0.42 probably_damaging(0.929) TCGA-2W-A8YY-01 17 76967791 76967791 G A LGALS3BP Missense_Mutation p.A542V 0.56 tolerated(0.06) possibly_damaging(0.543) TCGA-2W-A8YY-01 17 76968549 76968549 G T LGALS3BP Silent p.A289A 0.33 TCGA-2W-A8YY-01 17 76991127 76991127 G A CANT1 Missense_Mutation p.R270W 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 17 7699832 7699832 G T DNAH2 Missense_Mutation p.Q2575H 0.12 benign(0.188) TCGA-2W-A8YY-01 17 7701546 7701546 C T DNAH2 Missense_Mutation p.R2768C 0.42 probably_damaging(1) TCGA-2W-A8YY-01 17 77044162 77044162 G A C1QTNF1 Missense_Mutation p.E280K 0.42 deleterious(0) possibly_damaging(0.716) TCGA-2W-A8YY-01 17 77073797 77073797 G A ENGASE Silent p.S89S 0.46 TCGA-2W-A8YY-01 17 77082534 77082534 C T ENGASE 3'UTR 0.42 TCGA-2W-A8YY-01 17 77086696 77086696 A G RBFOX3 3'UTR 0.08 TCGA-2W-A8YY-01 17 7749772 7749772 C T KDM6B Missense_Mutation p.P171S 0.29 unknown(0) TCGA-2W-A8YY-01 17 7750893 7750893 G A KDM6B Silent p.A429A 0.44 TCGA-2W-A8YY-01 17 7754866 7754866 C T KDM6B Missense_Mutation p.R1339W 0.34 probably_damaging(0.99) TCGA-2W-A8YY-01 17 7756621 7756621 G A KDM6B Missense_Mutation p.A1611T 0.44 benign(0.243) TCGA-2W-A8YY-01 17 7756658 7756658 G A KDM6B Missense_Mutation p.R1623H 0.31 possibly_damaging(0.516) TCGA-2W-A8YY-01 17 7757304 7757304 C T KDM6B 3'UTR 0.39 TCGA-2W-A8YY-01 17 7757512 7757512 C T KDM6B 3'UTR 0.40 TCGA-2W-A8YY-01 17 7760739 7760739 C T LSMD1 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0) benign(0.216) TCGA-2W-A8YY-01 17 77709383 77709383 C T ENPP7 Missense_Mutation p.A314V 0.31 deleterious(0.01) benign(0.109) TCGA-2W-A8YY-01 17 77755930 77755930 G T CBX2 Intron 0.45 TCGA-2W-A8YY-01 17 77758700 77758700 C T CBX2 Silent p.S486S 0.31 TCGA-2W-A8YY-01 17 77769009 77769009 G A CBX8 Nonsense_Mutation p.R199* 0.38 TCGA-2W-A8YY-01 17 77807902 77807902 C T CBX4 Silent p.T513T 0.32 TCGA-2W-A8YY-01 17 77808738 77808738 G T CBX4 Missense_Mutation p.P235T 0.52 tolerated(0.13) benign(0.299) TCGA-2W-A8YY-01 17 77924640 77924640 G A TBC1D16 Intron 0.43 TCGA-2W-A8YY-01 17 78013825 78013825 C T CCDC40 Missense_Mutation p.P103L 0.55 tolerated(0.13) benign(0.056) TCGA-2W-A8YY-01 17 7806641 7806641 C T CHD3 Missense_Mutation p.R1242W 0.33 possibly_damaging(0.689) TCGA-2W-A8YY-01 17 78069245 78069245 C T CCDC40 Missense_Mutation p.R1006C 0.36 deleterious(0) possibly_damaging(0.608) TCGA-2W-A8YY-01 17 78073592 78073592 G A CCDC40 3'UTR 0.46 TCGA-2W-A8YY-01 17 7807890 7807890 G A CHD3 Missense_Mutation p.R1401Q 0.34 possibly_damaging(0.553) TCGA-2W-A8YY-01 17 78092477 78092477 G A GAA Missense_Mutation p.R891H 0.33 tolerated(1) benign(0) TCGA-2W-A8YY-01 17 78109127 78109127 G A EIF4A3 3'UTR 0.33 TCGA-2W-A8YY-01 17 78120716 78120716 C A EIF4A3 Missense_Mutation p.K15N 0.16 tolerated_low_confidence(0.15) benign(0.001) TCGA-2W-A8YY-01 17 7815068 7815068 C A CHD3 3'UTR 0.47 TCGA-2W-A8YY-01 17 78172351 78172351 G A CARD14 Silent p.A604A 0.34 TCGA-2W-A8YY-01 17 78177680 78177680 G A CARD14 Missense_Mutation p.R760H 0.45 deleterious(0.01) benign(0.073) TCGA-2W-A8YY-01 17 78182097 78182097 G A CARD14 Missense_Mutation p.A990T 0.36 tolerated(0.49) benign(0.015) TCGA-2W-A8YY-01 17 78184463 78184463 G A SGSH Missense_Mutation p.R433W 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 78195506 78195506 G A SLC26A11 Silent p.K49K 0.37 TCGA-2W-A8YY-01 17 78210773 78210773 C A SLC26A11 Silent p.S261S 0.42 TCGA-2W-A8YY-01 17 78226455 78226455 G T SLC26A11 Missense_Mutation p.Q587H 0.43 deleterious(0.01) benign(0.002) TCGA-2W-A8YY-01 17 78261659 78261659 G A RNF213 Missense_Mutation p.A103T 0.31 benign(0.002) TCGA-2W-A8YY-01 17 78272319 78272319 G A RNF213 Splice_Site p.X737_splice 0.29 TCGA-2W-A8YY-01 17 7828441 7828441 C T KCNAB3 Missense_Mutation p.R200H 0.36 deleterious(0.01) possibly_damaging(0.886) TCGA-2W-A8YY-01 17 78291044 78291044 G A RNF213 Silent p.S956S 0.46 TCGA-2W-A8YY-01 17 7830681 7830681 C T KCNAB3 Missense_Mutation p.E129K 0.24 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 17 78313918 78313918 G A RNF213 Silent p.T1917T 0.24 TCGA-2W-A8YY-01 17 78320061 78320061 G T RNF213 Missense_Mutation p.E2642D 0.35 probably_damaging(0.919) TCGA-2W-A8YY-01 17 78321684 78321684 G A RNF213 Nonsense_Mutation p.W3183* 0.08 TCGA-2W-A8YY-01 17 78326929 78326929 G A RNF213 Intron 0.36 TCGA-2W-A8YY-01 17 78356854 78356854 T C RNF213 Missense_Mutation p.I4685T 0.42 possibly_damaging(0.529) TCGA-2W-A8YY-01 17 78359348 78359348 G A RNF213 Silent p.R4822R 0.11 TCGA-2W-A8YY-01 17 78399371 78399371 G A ENDOV Missense_Mutation p.R222H 0.34 deleterious(0.04) benign(0.052) TCGA-2W-A8YY-01 17 78403874 78403874 G A ENDOV Intron 0.56 TCGA-2W-A8YY-01 17 78919552 78919552 C T RPTOR Silent p.C1037C 0.41 TCGA-2W-A8YY-01 17 78936277 78936277 C T RPTOR Missense_Mutation p.R1237C 0.32 deleterious(0) possibly_damaging(0.667) TCGA-2W-A8YY-01 17 78972979 78972979 G A CHMP6 3'UTR 0.30 TCGA-2W-A8YY-01 17 79006835 79006835 G A BAIAP2 5'Flank 0.09 TCGA-2W-A8YY-01 17 79031767 79031767 G A BAIAP2 Missense_Mutation p.G73R 0.18 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 79060351 79060351 C T BAIAP2 Missense_Mutation p.P154S 0.39 tolerated(0.08) benign(0.108) TCGA-2W-A8YY-01 17 79077763 79077763 C T BAIAP2 Silent p.G307G 0.50 TCGA-2W-A8YY-01 17 7909861 7909861 G A GUCY2D Missense_Mutation p.V403M 0.40 deleterious(0.01) probably_damaging(0.976) TCGA-2W-A8YY-01 17 79139455 79139455 C A AATK Intron 0.11 TCGA-2W-A8YY-01 17 79140636 79140636 C T AATK 5'Flank 0.35 TCGA-2W-A8YY-01 17 79163447 79163447 C T AZI1 3'Flank 0.50 TCGA-2W-A8YY-01 17 79205640 79205640 C T ENTHD2 Intron 0.39 TCGA-2W-A8YY-01 17 79205782 79205782 T G ENTHD2 Missense_Mutation p.D189A 0.42 deleterious(0.01) possibly_damaging(0.521) TCGA-2W-A8YY-01 17 79206307 79206307 C T ENTHD2 Intron 0.46 TCGA-2W-A8YY-01 17 79207233 79207233 C T ENTHD2 Silent p.T175T 0.41 TCGA-2W-A8YY-01 17 79207237 79207237 C T ENTHD2 Missense_Mutation p.R174H 0.42 tolerated(0.39) benign(0.002) TCGA-2W-A8YY-01 17 79210572 79210572 G A ENTHD2 Silent p.S81S 0.53 TCGA-2W-A8YY-01 17 79220099 79220099 G A SLC38A10 Missense_Mutation p.R873C 0.43 tolerated(0.06) possibly_damaging(0.453) TCGA-2W-A8YY-01 17 79429817 79429817 C T RP11-1055B8.7 Missense_Mutation p.R2479W 0.37 probably_damaging(0.99) TCGA-2W-A8YY-01 17 79429821 79429821 G A RP11-1055B8.7 Missense_Mutation p.G2480D 0.36 probably_damaging(0.917) TCGA-2W-A8YY-01 17 79431594 79431594 C T RP11-1055B8.7 3'UTR 0.45 TCGA-2W-A8YY-01 17 79432620 79432620 C A RP11-1055B8.7 3'UTR 0.83 TCGA-2W-A8YY-01 17 79433123 79433123 C T RP11-1055B8.7 3'UTR 0.41 TCGA-2W-A8YY-01 17 79477402 79477402 G A ACTG1 3'UTR 0.37 TCGA-2W-A8YY-01 17 79477972 79477972 G A ACTG1 Missense_Mutation p.P322L 0.15 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 17 79514561 79514561 C T C17orf70 Missense_Mutation p.R516H 0.35 tolerated(0.16) benign(0.07) TCGA-2W-A8YY-01 17 79518201 79518201 C T C17orf70 Missense_Mutation p.E107K 0.36 tolerated(0.19) benign(0.014) TCGA-2W-A8YY-01 17 79573789 79573789 G A NPLOC4 Silent p.C194C 0.45 TCGA-2W-A8YY-01 17 79575842 79575842 C T NPLOC4 Missense_Mutation p.D148N 0.38 deleterious(0.05) benign(0.385) TCGA-2W-A8YY-01 17 79577274 79577274 C T NPLOC4 Missense_Mutation p.G133S 0.24 tolerated(0.06) benign(0.382) TCGA-2W-A8YY-01 17 79653381 79653381 C T HGS Silent p.N54N 0.25 TCGA-2W-A8YY-01 17 79655752 79655752 G A HGS Missense_Mutation p.V104I 0.23 deleterious(0.03) possibly_damaging(0.893) TCGA-2W-A8YY-01 17 79663698 79663698 G A HGS Missense_Mutation p.R543Q 0.45 tolerated(0.21) probably_damaging(0.921) TCGA-2W-A8YY-01 17 79664023 79664023 C T HGS Missense_Mutation p.A626V 0.37 tolerated(0.34) benign(0) TCGA-2W-A8YY-01 17 79668134 79668134 C T HGS Silent p.I732I 0.30 TCGA-2W-A8YY-01 17 79674215 79674215 C T SLC25A10 Missense_Mutation p.A181V 0.40 deleterious(0.01) benign(0.167) TCGA-2W-A8YY-01 17 79682621 79682621 C T SLC25A10 Silent p.S109S 0.37 TCGA-2W-A8YY-01 17 7976583 7976583 C T ALOX12B Silent p.P603P 0.26 TCGA-2W-A8YY-01 17 79769313 79769313 G A GCGR Silent p.A178A 0.38 TCGA-2W-A8YY-01 17 79771466 79771466 C T GCGR Silent p.S445S 0.33 TCGA-2W-A8YY-01 17 79781154 79781154 C T FAM195B Missense_Mutation p.R88H 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-2W-A8YY-01 17 79792507 79792507 G A PPP1R27 Silent p.A71A 0.25 TCGA-2W-A8YY-01 17 79827106 79827106 G A ARHGDIA Nonsense_Mutation p.R120* 0.55 TCGA-2W-A8YY-01 17 79867460 79867460 G A PCYT2 Silent p.Y36Y 0.46 TCGA-2W-A8YY-01 17 79880329 79880329 G A MAFG 3'UTR 0.31 TCGA-2W-A8YY-01 17 79880796 79880796 C T MAFG Silent p.T58T 0.09 TCGA-2W-A8YY-01 17 79892230 79892230 C T PYCR1 Missense_Mutation p.A257T 0.09 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 17 79892801 79892801 C T PYCR1 Splice_Site p.X180_splice 0.35 TCGA-2W-A8YY-01 17 79943387 79943387 G A ASPSCR1 Missense_Mutation p.R93H 0.36 deleterious(0) unknown(0) TCGA-2W-A8YY-01 17 79954583 79954583 C A ASPSCR1 Missense_Mutation p.S265Y 0.35 deleterious(0.03) unknown(0) TCGA-2W-A8YY-01 17 79986492 79986492 G A LRRC45 Missense_Mutation p.R414H 0.38 tolerated(0.06) benign(0.027) TCGA-2W-A8YY-01 17 80014792 80014792 G A GPS1 Missense_Mutation p.R484H 0.10 tolerated(0.09) benign(0.233) TCGA-2W-A8YY-01 17 80014816 80014816 G A GPS1 Missense_Mutation p.R492Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 80022047 80022047 C T DUS1L Missense_Mutation p.A101T 0.21 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 80044266 80044266 G A FASN Missense_Mutation p.A1199V 0.50 tolerated(0.25) benign(0.012) TCGA-2W-A8YY-01 17 80046435 80046435 G A FASN Silent p.I808I 0.29 TCGA-2W-A8YY-01 17 80049405 80049405 G A FASN Silent p.F395F 0.21 TCGA-2W-A8YY-01 17 80071402 80071402 G A CCDC57 Missense_Mutation p.R293C 0.35 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 17 80071427 80071427 G A CCDC57 Silent p.S284S 0.31 TCGA-2W-A8YY-01 17 8007498 8007498 C T ALOXE3 Missense_Mutation p.V706M 0.35 deleterious(0) possibly_damaging(0.615) TCGA-2W-A8YY-01 17 80146123 80146123 C T CCDC57 Missense_Mutation p.A342T 0.36 tolerated(0.35) benign(0.024) TCGA-2W-A8YY-01 17 80195579 80195579 G A SLC16A3 Silent p.A311A 0.44 TCGA-2W-A8YY-01 17 80196979 80196979 C T SLC16A3 3'UTR 0.14 TCGA-2W-A8YY-01 17 80207939 80207939 A C CSNK1D Intron 0.21 TCGA-2W-A8YY-01 17 80273479 80273479 C T CD7 Intron 0.36 TCGA-2W-A8YY-01 17 80274249 80274249 G A CD7 Missense_Mutation p.A145V 0.29 tolerated(0.36) benign(0.017) TCGA-2W-A8YY-01 17 80373482 80373482 C T OGFOD3 Silent p.P32P 0.31 TCGA-2W-A8YY-01 17 80382303 80382303 G A HEXDC Missense_Mutation p.G40S 0.52 deleterious(0.03) probably_damaging(0.922) TCGA-2W-A8YY-01 17 80393711 80393711 C T HEXDC Silent p.D198D 0.33 TCGA-2W-A8YY-01 17 80395116 80395116 C T HEXDC Missense_Mutation p.T259M 0.35 deleterious(0.02) possibly_damaging(0.694) TCGA-2W-A8YY-01 17 80438415 80438415 T C NARF Intron 0.30 TCGA-2W-A8YY-01 17 80541983 80541984 - C FOXK2 Frame_Shift_Ins p.L402Pfs*4 0.19 TCGA-2W-A8YY-01 17 80542007 80542007 G A FOXK2 Missense_Mutation p.A408T 0.23 tolerated(0.37) benign(0.008) TCGA-2W-A8YY-01 17 80574462 80574462 A C WDR45B Missense_Mutation p.F289C 0.16 deleterious(0) benign(0.104) TCGA-2W-A8YY-01 17 80585090 80585090 G A WDR45B Missense_Mutation p.R108W 0.23 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 17 80601890 80601890 G A WDR45B Missense_Mutation p.A26V 0.39 deleterious(0.04) benign(0.124) TCGA-2W-A8YY-01 17 80721882 80721882 A G TBCD Missense_Mutation p.T93A 0.09 tolerated(0.83) benign(0.001) TCGA-2W-A8YY-01 17 80890589 80890589 G A TBCD Missense_Mutation p.D1057N 0.43 deleterious(0.04) probably_damaging(0.939) TCGA-2W-A8YY-01 17 80914579 80914579 C T B3GNTL1 Missense_Mutation p.V333M 0.44 tolerated(0.07) possibly_damaging(0.623) TCGA-2W-A8YY-01 17 81042827 81042827 G A METRNL Missense_Mutation p.E62K 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 17 81052043 81052043 G A METRNL Missense_Mutation p.R220Q 0.42 tolerated(0.95) benign(0.006) TCGA-2W-A8YY-01 17 8110127 8110127 C T AURKB Missense_Mutation p.G160R 0.43 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 17 8131903 8131903 T C CTC1 Silent p.T1144T 0.53 TCGA-2W-A8YY-01 17 8136344 8136344 G A CTC1 Missense_Mutation p.L609F 0.38 deleterious(0.01) possibly_damaging(0.905) TCGA-2W-A8YY-01 17 8158936 8158936 G A PFAS Silent p.P167P 0.26 TCGA-2W-A8YY-01 17 8159700 8159700 G A PFAS Missense_Mutation p.V266I 0.27 tolerated(0.27) benign(0.008) TCGA-2W-A8YY-01 17 8167126 8167127 - G PFAS Frame_Shift_Ins p.A557Gfs*2 0.16 TCGA-2W-A8YY-01 17 8169325 8169325 G A PFAS Silent p.G897G 0.25 TCGA-2W-A8YY-01 17 8216387 8216387 G A ARHGEF15 Missense_Mutation p.R250H 0.31 deleterious(0.03) benign(0.439) TCGA-2W-A8YY-01 17 8219101 8219101 C T ARHGEF15 Missense_Mutation p.R484C 0.31 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 17 8272769 8272769 G A KRBA2 Missense_Mutation p.L388F 0.29 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 17 8370549 8370549 G A NDEL1 3'UTR 0.29 TCGA-2W-A8YY-01 17 8371051 8371051 G A NDEL1 3'UTR 0.52 TCGA-2W-A8YY-01 17 8393762 8393762 G A MYH10 Missense_Mutation p.L1594F 0.37 probably_damaging(0.998) TCGA-2W-A8YY-01 17 8445499 8445499 G A MYH10 Missense_Mutation p.R511C 0.29 possibly_damaging(0.901) TCGA-2W-A8YY-01 17 8638828 8638828 G A CCDC42 Silent p.R198R 0.43 TCGA-2W-A8YY-01 17 8644966 8644966 G A CCDC42 Silent p.R106R 0.29 TCGA-2W-A8YY-01 17 8646998 8646998 G A CCDC42 Silent p.G80G 0.35 TCGA-2W-A8YY-01 17 8658913 8658913 G A SPDYE4 Missense_Mutation p.A137V 0.33 deleterious(0.04) possibly_damaging(0.524) TCGA-2W-A8YY-01 17 8701592 8701592 G A MFSD6L Nonsense_Mutation p.R283* 0.15 TCGA-2W-A8YY-01 17 8722438 8722438 A G PIK3R6 Missense_Mutation p.V652A 0.28 tolerated(0.08) possibly_damaging(0.661) TCGA-2W-A8YY-01 17 8738667 8738667 G A PIK3R6 Missense_Mutation p.R190C 0.50 tolerated(0.28) probably_damaging(0.949) TCGA-2W-A8YY-01 17 8789794 8789794 C A PIK3R5 Missense_Mutation p.E678D 0.34 deleterious(0.01) probably_damaging(0.977) TCGA-2W-A8YY-01 17 907977 907977 C T ABR 3'UTR 0.30 TCGA-2W-A8YY-01 17 908943 908943 G A ABR 3'UTR 0.26 TCGA-2W-A8YY-01 17 925740 925740 G A ABR Intron 0.15 TCGA-2W-A8YY-01 17 9503411 9503411 C A WDR16 Missense_Mutation p.L222I 0.35 tolerated(0.1) benign(0.003) TCGA-2W-A8YY-01 17 9545044 9545044 G T WDR16 Missense_Mutation p.A527S 0.23 tolerated(0.44) benign(0.009) TCGA-2W-A8YY-01 17 9545058 9545058 A G WDR16 Silent p.V531V 0.20 TCGA-2W-A8YY-01 17 970347 970347 G T ABR Silent p.I384I 0.44 TCGA-2W-A8YY-01 17 970423 970423 G A ABR Missense_Mutation p.S359F 0.41 tolerated(0.17) benign(0.378) TCGA-2W-A8YY-01 17 9816736 9816736 C A GAS7 3'Flank 0.33 TCGA-2W-A8YY-01 17 9820029 9820029 C T GAS7 3'UTR 0.31 TCGA-2W-A8YY-01 18 10485487 10485487 G A APCDD1 Missense_Mutation p.R268Q 0.12 tolerated(0.51) probably_damaging(0.981) TCGA-2W-A8YY-01 18 10742530 10742530 C G PIEZO2 Missense_Mutation p.G1508A 0.22 tolerated(0.09) benign(0.025) TCGA-2W-A8YY-01 18 10750089 10750089 G A PIEZO2 Missense_Mutation p.P1397S 0.30 tolerated(0.09) benign(0.11) TCGA-2W-A8YY-01 18 11752539 11752539 G A GNAL Intron 0.33 TCGA-2W-A8YY-01 18 11752900 11752900 T C GNAL Missense_Mutation p.L142P 0.24 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 18 11851964 11851964 C T CHMP1B Silent p.L152L 0.28 TCGA-2W-A8YY-01 18 11876686 11876686 T C GNAL Missense_Mutation p.L410S 0.27 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 18 11884349 11884349 G A MPPE1 3'UTR 0.10 TCGA-2W-A8YY-01 18 12126201 12126201 G A ANKRD62 Missense_Mutation p.R794H 0.37 tolerated(0.71) benign(0) TCGA-2W-A8YY-01 18 12127838 12127838 G A ANKRD62 Missense_Mutation p.R885H 0.29 tolerated(0.21) benign(0.001) TCGA-2W-A8YY-01 18 12325217 12325217 G A TUBB6 Silent p.T143T 0.33 TCGA-2W-A8YY-01 18 12329154 12329154 A G TUBB6 3'Flank 0.27 TCGA-2W-A8YY-01 18 12429391 12429391 G A SLMO1 Missense_Mutation p.A170T 0.45 tolerated(0.23) benign(0.011) TCGA-2W-A8YY-01 18 12454420 12454420 G A SPIRE1 Silent p.R567R 0.34 TCGA-2W-A8YY-01 18 12479752 12479752 C T SPIRE1 Silent p.R450R 0.40 TCGA-2W-A8YY-01 18 12506615 12506615 C A SPIRE1 Missense_Mutation p.R278M 0.38 deleterious(0) probably_damaging(0.917) TCGA-2W-A8YY-01 18 12535549 12535549 C T SPIRE1 Missense_Mutation p.A219T 0.29 deleterious(0) probably_damaging(0.922) TCGA-2W-A8YY-01 18 12546731 12546731 C T SPIRE1 Missense_Mutation p.G182E 0.10 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 18 12674547 12674547 G A CEP76 Missense_Mutation p.A610V 0.13 tolerated(0.15) benign(0.028) TCGA-2W-A8YY-01 18 12793280 12793280 G A PTPN2 3'UTR 0.67 TCGA-2W-A8YY-01 18 12793689 12793689 G A PTPN2 3'UTR 0.56 TCGA-2W-A8YY-01 18 12794471 12794471 G A PTPN2 Missense_Mutation p.R352C 0.49 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 18 13049596 13049596 C T CEP192 Nonsense_Mutation p.Q936* 0.41 TCGA-2W-A8YY-01 18 13612569 13612569 A G LDLRAD4 Intron 0.38 TCGA-2W-A8YY-01 18 13884957 13884957 G T MC2R Silent p.V187V 0.48 TCGA-2W-A8YY-01 18 14478086 14478086 A G CXADRP3 RNA 0.52 TCGA-2W-A8YY-01 18 14478156 14478156 G A CXADRP3 RNA 0.47 TCGA-2W-A8YY-01 18 14479251 14479251 G A CXADRP3 RNA 0.38 TCGA-2W-A8YY-01 18 14542990 14542990 G T POTEC Silent p.S52S 0.37 TCGA-2W-A8YY-01 18 14543055 14543055 G A POTEC Missense_Mutation p.R31C 0.32 tolerated_low_confidence(1) possibly_damaging(0.689) TCGA-2W-A8YY-01 18 14543108 14543108 G A POTEC Missense_Mutation p.A13V 0.45 deleterious_low_confidence(0.01) benign(0.017) TCGA-2W-A8YY-01 18 14748357 14748357 G A ANKRD30B 5'UTR 0.53 TCGA-2W-A8YY-01 18 14763787 14763787 G A ANKRD30B Missense_Mutation p.R308H 0.44 tolerated(0.13) benign(0.005) TCGA-2W-A8YY-01 18 14787093 14787093 T A ANKRD30B Missense_Mutation p.D576E 0.21 deleterious(0.03) probably_damaging(0.98) TCGA-2W-A8YY-01 18 14803777 14803777 G A ANKRD30B Silent p.K746K 0.11 TCGA-2W-A8YY-01 18 14831397 14831397 G A ANKRD30B Silent p.P811P 0.61 TCGA-2W-A8YY-01 18 18530134 18530134 C T ROCK1 3'UTR 0.36 TCGA-2W-A8YY-01 18 18530769 18530769 A G ROCK1 3'UTR 0.24 TCGA-2W-A8YY-01 18 18534790 18534790 G A ROCK1 Silent p.H1269H 0.46 TCGA-2W-A8YY-01 18 18549163 18549163 C A ROCK1 Nonsense_Mutation p.E943* 0.49 TCGA-2W-A8YY-01 18 19057269 19057269 C T GREB1L Silent p.S836S 0.28 TCGA-2W-A8YY-01 18 19079939 19079939 C T GREB1L Missense_Mutation p.P1214L 0.23 deleterious(0.05) benign(0.018) TCGA-2W-A8YY-01 18 19080072 19080072 C A GREB1L Silent p.P1258P 0.08 TCGA-2W-A8YY-01 18 19096634 19096634 C T GREB1L Silent p.C1730C 0.12 TCGA-2W-A8YY-01 18 19098108 19098108 C T GREB1L Silent p.H1795H 0.47 TCGA-2W-A8YY-01 18 19283682 19283682 C A ABHD3 Missense_Mutation p.E63D 0.11 tolerated(0.3) benign(0.004) TCGA-2W-A8YY-01 18 198131 198131 A G USP14 Missense_Mutation p.T254A 0.12 tolerated(0.36) benign(0.014) TCGA-2W-A8YY-01 18 198133 198133 G A USP14 Splice_Site p.X254_splice 0.32 TCGA-2W-A8YY-01 18 19996564 19996564 C T CTAGE1 Missense_Mutation p.R404Q 0.38 tolerated(0.15) benign(0.032) TCGA-2W-A8YY-01 18 20833767 20833767 T C CABLES1 Missense_Mutation p.V543A 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 18 21109251 21109251 G A C18orf8 Missense_Mutation p.V469M 0.21 tolerated(0.07) benign(0.155) TCGA-2W-A8YY-01 18 21136548 21136548 C T NPC1 Missense_Mutation p.A329T 0.23 tolerated(0.08) benign(0.003) TCGA-2W-A8YY-01 18 21355807 21355807 G A LAMA3 Missense_Mutation p.R442H 0.12 benign(0.262) TCGA-2W-A8YY-01 18 21474930 21474930 C T LAMA3 Missense_Mutation p.R1841C 0.45 possibly_damaging(0.901) TCGA-2W-A8YY-01 18 21494725 21494725 C T LAMA3 Silent p.P2515P 0.28 TCGA-2W-A8YY-01 18 21898588 21898588 G A OSBPL1A Nonsense_Mutation p.R237* 0.25 TCGA-2W-A8YY-01 18 22007976 22007976 G A IMPACT Missense_Mutation p.D44N 0.19 tolerated(0.43) benign(0.024) TCGA-2W-A8YY-01 18 22040691 22040691 T C HRH4 5'UTR 0.49 TCGA-2W-A8YY-01 18 22048793 22048793 G A HRH4 Missense_Mutation p.E79K 0.11 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 18 22057076 22057076 G A HRH4 Silent p.S241S 0.31 TCGA-2W-A8YY-01 18 22804733 22804733 G T ZNF521 Missense_Mutation p.S1050Y 0.31 deleterious(0) possibly_damaging(0.851) TCGA-2W-A8YY-01 18 22807504 22807504 C T ZNF521 Silent p.S126S 0.17 TCGA-2W-A8YY-01 18 23637565 23637565 C T SS18 Missense_Mutation p.G125S 0.35 tolerated_low_confidence(0.06) probably_damaging(0.962) TCGA-2W-A8YY-01 18 23895293 23895293 C A TAF4B Missense_Mutation p.L645I 0.27 tolerated(0.09) probably_damaging(0.942) TCGA-2W-A8YY-01 18 24039731 24039731 C T KCTD1 Silent p.T156T 0.38 TCGA-2W-A8YY-01 18 24435643 24435643 G A AQP4 3'UTR 0.30 TCGA-2W-A8YY-01 18 24510633 24510633 G T CHST9 Intron 0.32 TCGA-2W-A8YY-01 18 247950 247950 G T THOC1 Missense_Mutation p.P229T 0.32 tolerated(0.08) benign(0.227) TCGA-2W-A8YY-01 18 25563000 25563000 G A CDH2 Missense_Mutation p.R753C 0.51 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 18 2606503 2606503 T C NDC80 Silent p.I518I 0.32 TCGA-2W-A8YY-01 18 2667031 2667031 G A SMCHD1 Splice_Site p.X142_splice 0.39 TCGA-2W-A8YY-01 18 2688429 2688429 C T SMCHD1 Missense_Mutation p.R226C 0.40 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 18 2700798 2700798 C T SMCHD1 Missense_Mutation p.S510F 0.29 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 18 2729379 2729379 A G SMCHD1 Missense_Mutation p.Q1007R 0.20 tolerated(0.12) benign(0.219) TCGA-2W-A8YY-01 18 2732355 2732355 A C SMCHD1 Missense_Mutation p.Q1047H 0.45 deleterious(0.02) possibly_damaging(0.83) TCGA-2W-A8YY-01 18 2796497 2796497 C T SMCHD1 Nonsense_Mutation p.R1991* 0.33 TCGA-2W-A8YY-01 18 2802579 2802579 C A SMCHD1 3'UTR 0.33 TCGA-2W-A8YY-01 18 28574133 28574133 C A DSC3 3'UTR 0.32 TCGA-2W-A8YY-01 18 28581681 28581681 C T DSC3 Missense_Mutation p.G713E 0.18 tolerated(0.22) probably_damaging(0.911) TCGA-2W-A8YY-01 18 28672143 28672143 C A DSC2 Missense_Mutation p.R92I 0.58 deleterious(0) probably_damaging(0.932) TCGA-2W-A8YY-01 18 28672144 28672144 T C DSC2 Missense_Mutation p.R92G 0.28 deleterious(0) possibly_damaging(0.742) TCGA-2W-A8YY-01 18 28913615 28913615 T C DSG1 Missense_Mutation p.S250P 0.31 deleterious(0) possibly_damaging(0.588) TCGA-2W-A8YY-01 18 2892357 2892357 G T EMILIN2 Missense_Mutation p.M744I 0.43 tolerated(0.18) possibly_damaging(0.471) TCGA-2W-A8YY-01 18 28934953 28934953 G A DSG1 Missense_Mutation p.G932S 0.51 tolerated(0.18) benign(0.309) TCGA-2W-A8YY-01 18 28991081 28991081 C T DSG4 Silent p.S694S 0.52 TCGA-2W-A8YY-01 18 29110998 29110998 G A DSG2 Missense_Mutation p.A355T 0.39 tolerated(1) benign(0) TCGA-2W-A8YY-01 18 29126723 29126723 A G DSG2 3'UTR 0.33 TCGA-2W-A8YY-01 18 29178548 29178548 C T TTR Silent p.N118N 0.17 TCGA-2W-A8YY-01 18 29204926 29204926 G T B4GALT6 3'UTR 0.20 TCGA-2W-A8YY-01 18 29205685 29205685 G A B4GALT6 Silent p.I347I 0.39 TCGA-2W-A8YY-01 18 29206283 29206283 G T B4GALT6 Missense_Mutation p.P322T 0.17 deleterious(0.03) possibly_damaging(0.759) TCGA-2W-A8YY-01 18 2938019 2938019 C T LPIN2 Missense_Mutation p.R280Q 0.41 tolerated(0.18) benign(0.195) TCGA-2W-A8YY-01 18 29496337 29496337 C T TRAPPC8 Missense_Mutation p.R172Q 0.29 tolerated(0.57) benign(0.025) TCGA-2W-A8YY-01 18 29522714 29522714 A G TRAPPC8 Missense_Mutation p.V5A 0.17 tolerated(0.4) benign(0.031) TCGA-2W-A8YY-01 18 29787328 29787328 G T MEP1B Nonsense_Mutation p.E221* 0.14 TCGA-2W-A8YY-01 18 29790535 29790535 A G MEP1B Missense_Mutation p.T331A 0.42 deleterious(0) benign(0.04) TCGA-2W-A8YY-01 18 29847792 29847792 G T GAREM 3'UTR 0.34 TCGA-2W-A8YY-01 18 30092486 30092486 C T WBP11P1 RNA 0.21 TCGA-2W-A8YY-01 18 3083852 3083852 C A MYOM1 Missense_Mutation p.E1473D 0.35 tolerated(0.05) benign(0.198) TCGA-2W-A8YY-01 18 31250713 31250713 C T ASXL3 Missense_Mutation p.T185I 0.45 probably_damaging(0.999) TCGA-2W-A8YY-01 18 3126825 3126825 C A MYOM1 Missense_Mutation p.K955N 0.42 deleterious(0.04) possibly_damaging(0.644) TCGA-2W-A8YY-01 18 31319710 31319710 C T ASXL3 Missense_Mutation p.P781L 0.28 benign(0.025) TCGA-2W-A8YY-01 18 31323757 31323757 A G ASXL3 Silent p.S1315S 0.42 TCGA-2W-A8YY-01 18 3164323 3164323 C T MYOM1 Missense_Mutation p.R485Q 0.15 tolerated(0.68) benign(0.015) TCGA-2W-A8YY-01 18 319402 319403 - A COLEC12 3'UTR 0.39 TCGA-2W-A8YY-01 18 32418111 32418111 C A DTNA Intron 0.33 TCGA-2W-A8YY-01 18 32471180 32471180 A - DTNA 3'Flank 0.36 TCGA-2W-A8YY-01 18 32837991 32837991 C T ZSCAN30 Intron 0.30 TCGA-2W-A8YY-01 18 32890489 32890489 A G ZNF271 RNA 0.49 TCGA-2W-A8YY-01 18 32912808 32912808 T C ZNF24 3'UTR 0.62 TCGA-2W-A8YY-01 18 33234583 33234584 - TA GALNT1 5'UTR 0.35 TCGA-2W-A8YY-01 18 33234597 33234597 T A GALNT1 5'UTR 0.09 TCGA-2W-A8YY-01 18 33290887 33290887 A G GALNT1 3'UTR 0.31 TCGA-2W-A8YY-01 18 33558955 33558955 G T C18orf21 Nonsense_Mutation p.G217* 0.38 TCGA-2W-A8YY-01 18 33691205 33691205 A G SLC39A6 Silent p.F644F 0.31 TCGA-2W-A8YY-01 18 33694268 33694268 G A SLC39A6 Silent p.H545H 0.33 TCGA-2W-A8YY-01 18 33754609 33754609 C T ELP2 3'UTR 0.43 TCGA-2W-A8YY-01 18 34156500 34156500 G A FHOD3 Missense_Mutation p.G200R 0.36 deleterious(0) possibly_damaging(0.9) TCGA-2W-A8YY-01 18 34267121 34267121 A G FHOD3 Silent p.Q492Q 0.41 TCGA-2W-A8YY-01 18 34297818 34297818 G T FHOD3 Missense_Mutation p.D678Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 18 34340722 34340722 G A FHOD3 Missense_Mutation p.R1351H 0.12 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 18 3447681 3447681 G T TGIF1 5'Flank 0.32 TCGA-2W-A8YY-01 18 34824116 34824125 TCCTTTTTTA CCTTTTTTAT CELF4 3'UTR 0.11 TCGA-2W-A8YY-01 18 3499243 3499243 C T DLGAP1 Silent p.S958S 0.18 TCGA-2W-A8YY-01 18 3874767 3874767 C T DLGAP1 Intron 0.44 TCGA-2W-A8YY-01 18 39609350 39609350 G A PIK3C3 Missense_Mutation p.R551Q 0.44 tolerated(0.4) benign(0.072) TCGA-2W-A8YY-01 18 40323232 40323233 - A RIT2 3'UTR 0.33 TCGA-2W-A8YY-01 18 40848094 40848094 A G SYT4 3'UTR 0.35 TCGA-2W-A8YY-01 18 40853691 40853691 C A SYT4 Nonsense_Mutation p.E235* 0.46 TCGA-2W-A8YY-01 18 42531366 42531366 C T SETBP1 Silent p.S687S 0.29 TCGA-2W-A8YY-01 18 43253776 43253776 G A SLC14A2 Missense_Mutation p.A836T 0.40 tolerated(0.25) benign(0.063) TCGA-2W-A8YY-01 18 43420192 43420192 G A SIGLEC15 Silent p.P297P 0.44 TCGA-2W-A8YY-01 18 43437840 43437840 G A EPG5 Missense_Mutation p.R2474W 0.19 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 18 43446947 43446947 C T EPG5 Missense_Mutation p.G2146E 0.33 tolerated(0.33) probably_damaging(0.998) TCGA-2W-A8YY-01 18 43492283 43492283 A G EPG5 Missense_Mutation p.Y1319H 0.44 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 18 43526730 43526730 G A EPG5 Nonsense_Mutation p.R526* 0.30 TCGA-2W-A8YY-01 18 43529504 43529504 G A EPG5 Silent p.N481N 0.38 TCGA-2W-A8YY-01 18 43570718 43570718 C T PSTPIP2 Missense_Mutation p.G309R 0.23 deleterious(0.03) benign(0.049) TCGA-2W-A8YY-01 18 43667430 43667430 C T ATP5A1 Silent p.S276S 0.32 TCGA-2W-A8YY-01 18 43795987 43795987 G A C18orf25 Silent p.A47A 0.25 TCGA-2W-A8YY-01 18 43843233 43843233 T - C18orf25 3'UTR 0.19 TCGA-2W-A8YY-01 18 43844445 43844445 G A C18orf25 3'UTR 0.67 TCGA-2W-A8YY-01 18 43846300 43846300 C A C18orf25 3'UTR 0.44 TCGA-2W-A8YY-01 18 44037387 44037387 A G RNF165 3'UTR 0.34 TCGA-2W-A8YY-01 18 44038273 44038273 A G RNF165 3'UTR 0.55 TCGA-2W-A8YY-01 18 44039914 44039914 G A RNF165 3'UTR 0.09 TCGA-2W-A8YY-01 18 44065080 44065080 G A LOXHD1 Silent p.G917G 0.55 TCGA-2W-A8YY-01 18 44190785 44190785 A G LOXHD1 Missense_Mutation p.V238A 0.35 deleterious(0.03) benign(0.025) TCGA-2W-A8YY-01 18 44272197 44272197 G A ST8SIA5 Silent p.F82F 0.37 TCGA-2W-A8YY-01 18 44409746 44409746 C T PIAS2 Silent p.P429P 0.23 TCGA-2W-A8YY-01 18 44426790 44426790 C T PIAS2 Silent p.P247P 0.32 TCGA-2W-A8YY-01 18 44555064 44555064 C T TCEB3C Missense_Mutation p.A384T 0.05 tolerated(0.39) possibly_damaging(0.813) TCGA-2W-A8YY-01 18 44555097 44555097 C T TCEB3C Missense_Mutation p.D373N 0.07 deleterious(0) benign(0.342) TCGA-2W-A8YY-01 18 44559432 44559432 A G TCEB3B Missense_Mutation p.V735A 0.35 deleterious(0) possibly_damaging(0.525) TCGA-2W-A8YY-01 18 44560209 44560209 G A TCEB3B Missense_Mutation p.P476L 0.31 tolerated(0.17) benign(0) TCGA-2W-A8YY-01 18 44634068 44634068 G A HDHD2 3'UTR 0.44 TCGA-2W-A8YY-01 18 44639375 44639375 C T HDHD2 Missense_Mutation p.G217S 0.51 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 18 44656691 44656691 T - HDHD2 Frame_Shift_Del p.T107Qfs*21 0.23 TCGA-2W-A8YY-01 18 44702585 44702585 G A IER3IP1 Silent p.L22L 0.17 TCGA-2W-A8YY-01 18 44774926 44774926 C T SKOR2 Missense_Mutation p.R210H 0.34 probably_damaging(0.999) TCGA-2W-A8YY-01 18 45422965 45422965 T C SMAD2 Missense_Mutation p.T55A 0.44 tolerated(0.14) possibly_damaging(0.644) TCGA-2W-A8YY-01 18 45555782 45555782 G A ZBTB7C Missense_Mutation p.A570V 0.34 tolerated_low_confidence(0.08) possibly_damaging(0.599) TCGA-2W-A8YY-01 18 46287938 46287938 A G CTIF Missense_Mutation p.I419V 0.17 tolerated(0.17) benign(0.024) TCGA-2W-A8YY-01 18 46386057 46386057 C T CTIF 3'UTR 0.24 TCGA-2W-A8YY-01 18 46446303 46446303 A - SMAD7 3'UTR 0.29 TCGA-2W-A8YY-01 18 46448138 46448138 G T SMAD7 Silent p.G295G 0.30 TCGA-2W-A8YY-01 18 46570361 46570361 C T DYM 3'UTR 0.16 TCGA-2W-A8YY-01 18 46570409 46570409 G A DYM 3'UTR 0.35 TCGA-2W-A8YY-01 18 47014862 47014862 T G RPL17 3'UTR 0.46 TCGA-2W-A8YY-01 18 47088647 47088647 C A LIPG 5'UTR 0.42 TCGA-2W-A8YY-01 18 47107935 47107935 G A LIPG Missense_Mutation p.R315H 0.12 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 18 47329170 47329170 G A ACAA2 Silent p.L24L 0.19 TCGA-2W-A8YY-01 18 47329180 47329180 G A ACAA2 Silent p.Y20Y 0.11 TCGA-2W-A8YY-01 18 47352513 47352513 G T MYO5B 3'UTR 0.44 TCGA-2W-A8YY-01 18 47369687 47369687 G A MYO5B Missense_Mutation p.A1512V 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 18 47753689 47753689 A G CCDC11 3'UTR 0.45 TCGA-2W-A8YY-01 18 47753730 47753730 G A CCDC11 3'UTR 0.44 TCGA-2W-A8YY-01 18 47795874 47795874 C T MBD1 3'UTR 0.33 TCGA-2W-A8YY-01 18 47800098 47800098 G A MBD1 Missense_Mutation p.R428C 0.49 tolerated(0.16) benign(0.003) TCGA-2W-A8YY-01 18 47802322 47802322 G A MBD1 Silent p.C182C 0.37 TCGA-2W-A8YY-01 18 47803297 47803297 C A MBD1 Missense_Mutation p.Q99H 0.39 tolerated(0.14) benign(0.012) TCGA-2W-A8YY-01 18 47806308 47806308 C T MBD1 Missense_Mutation p.E19K 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 18 47810907 47810907 C T CXXC1 Missense_Mutation p.R353Q 0.32 deleterious(0.01) benign(0.091) TCGA-2W-A8YY-01 18 47810908 47810908 G A CXXC1 Missense_Mutation p.R353W 0.45 deleterious(0) possibly_damaging(0.802) TCGA-2W-A8YY-01 18 47811527 47811527 G A CXXC1 Missense_Mutation p.R253C 0.12 deleterious(0.01) possibly_damaging(0.649) TCGA-2W-A8YY-01 18 47902265 47902265 A C SKA1 Missense_Mutation p.K22T 0.25 tolerated(0.06) benign(0.208) TCGA-2W-A8YY-01 18 47917654 47917654 G A SKA1 Missense_Mutation p.D204N 0.39 deleterious(0) possibly_damaging(0.708) TCGA-2W-A8YY-01 18 48248385 48248385 C T MAPK4 Missense_Mutation p.L257F 0.49 deleterious(0.04) probably_damaging(0.994) TCGA-2W-A8YY-01 18 48256802 48256802 C T MAPK4 3'UTR 0.48 TCGA-2W-A8YY-01 18 48604668 48604668 G A SMAD4 Missense_Mutation p.R497H 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 18 49867231 49867231 C T DCC Missense_Mutation p.A25V 0.38 tolerated(0.14) benign(0.001) TCGA-2W-A8YY-01 18 50683800 50683800 C T DCC Missense_Mutation p.R446C 0.31 deleterious(0) probably_damaging(0.969) TCGA-2W-A8YY-01 18 50683837 50683837 A G DCC Missense_Mutation p.N458S 0.10 tolerated(0.21) benign(0.001) TCGA-2W-A8YY-01 18 51013309 51013309 C T DCC Silent p.F1293F 0.47 TCGA-2W-A8YY-01 18 51057009 51057009 G A DCC Missense_Mutation p.G1444S 0.12 tolerated(0.32) benign(0.191) TCGA-2W-A8YY-01 18 51818367 51818367 C T POLI Missense_Mutation p.P455S 0.29 tolerated(0.17) benign(0.009) TCGA-2W-A8YY-01 18 52596070 52596070 T C CCDC68 Missense_Mutation p.K215R 0.42 tolerated(0.16) possibly_damaging(0.736) TCGA-2W-A8YY-01 18 52894744 52894744 C T TCF4 3'Flank 0.36 TCGA-2W-A8YY-01 18 52895161 52895162 - A TCF4 3'Flank 0.12 TCGA-2W-A8YY-01 18 52901847 52901847 G T TCF4 Missense_Mutation p.P575Q 0.44 deleterious(0.03) possibly_damaging(0.588) TCGA-2W-A8YY-01 18 5291046 5291046 C A ZBTB14 Missense_Mutation p.K387N 0.22 deleterious(0) probably_damaging(0.951) TCGA-2W-A8YY-01 18 5292161 5292161 C T ZBTB14 Missense_Mutation p.D16N 0.35 tolerated(0.06) benign(0.002) TCGA-2W-A8YY-01 18 52937148 52937148 G A TCF4 Missense_Mutation p.P381L 0.38 deleterious(0) probably_damaging(0.952) TCGA-2W-A8YY-01 18 5393103 5393103 T - EPB41L3 3'UTR 0.34 TCGA-2W-A8YY-01 18 5393317 5393317 C T EPB41L3 3'UTR 0.35 TCGA-2W-A8YY-01 18 5396233 5396233 G A EPB41L3 Silent p.T980T 0.21 TCGA-2W-A8YY-01 18 5396261 5396261 G A EPB41L3 Missense_Mutation p.S971F 0.53 deleterious(0) possibly_damaging(0.857) TCGA-2W-A8YY-01 18 5397336 5397336 C T EPB41L3 Silent p.E854E 0.44 TCGA-2W-A8YY-01 18 5415934 5415934 C T EPB41L3 Silent p.V650V 0.26 TCGA-2W-A8YY-01 18 5419784 5419784 G A EPB41L3 Missense_Mutation p.R478W 0.39 deleterious(0) possibly_damaging(0.677) TCGA-2W-A8YY-01 18 54339849 54339849 G A WDR7 Missense_Mutation p.V35I 0.39 tolerated(0.39) benign(0.023) TCGA-2W-A8YY-01 18 5434080 5434080 C T EPB41L3 Missense_Mutation p.G216R 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 18 54424311 54424311 C T WDR7 Silent p.P829P 0.33 TCGA-2W-A8YY-01 18 54591331 54591331 A G WDR7 Silent p.Q1235Q 0.51 TCGA-2W-A8YY-01 18 55020236 55020236 C T ST8SIA3 Silent p.Y53Y 0.43 TCGA-2W-A8YY-01 18 55103543 55103543 C T ONECUT2 Missense_Mutation p.R199C 0.31 deleterious(0) probably_damaging(0.951) TCGA-2W-A8YY-01 18 55103659 55103659 C T ONECUT2 Silent p.G237G 0.10 TCGA-2W-A8YY-01 18 55143847 55143847 C T ONECUT2 Silent p.T469T 0.26 TCGA-2W-A8YY-01 18 55145332 55145332 C T ONECUT2 3'UTR 0.16 TCGA-2W-A8YY-01 18 55150452 55150452 C T ONECUT2 3'UTR 0.20 TCGA-2W-A8YY-01 18 55154181 55154181 T C ONECUT2 3'UTR 0.29 TCGA-2W-A8YY-01 18 55218566 55218566 C T FECH Missense_Mutation p.G379E 0.48 tolerated(0.07) possibly_damaging(0.727) TCGA-2W-A8YY-01 18 55268890 55268890 C T NARS Silent p.T547T 0.12 TCGA-2W-A8YY-01 18 55269712 55269712 C T NARS Missense_Mutation p.V464M 0.24 deleterious(0.01) benign(0.105) TCGA-2W-A8YY-01 18 55317712 55317712 G T ATP8B1 Missense_Mutation p.L1140M 0.39 tolerated(0.21) probably_damaging(0.999) TCGA-2W-A8YY-01 18 55322459 55322459 G A ATP8B1 Silent p.F966F 0.39 TCGA-2W-A8YY-01 18 55352338 55352338 C T ATP8B1 Missense_Mutation p.R480Q 0.36 tolerated(0.31) benign(0.002) TCGA-2W-A8YY-01 18 55365040 55365040 T - ATP8B1 Frame_Shift_Del p.N205Mfs*33 0.33 TCGA-2W-A8YY-01 18 55816757 55816757 T C NEDD4L Intron 0.46 TCGA-2W-A8YY-01 18 56010283 56010283 C T NEDD4L Missense_Mutation p.A508V 0.29 deleterious(0) benign(0.053) TCGA-2W-A8YY-01 18 56203664 56203664 C T ALPK2 Missense_Mutation p.R1252Q 0.14 tolerated(0.17) benign(0.406) TCGA-2W-A8YY-01 18 56205107 56205107 G T ALPK2 Missense_Mutation p.P771H 0.09 deleterious(0.04) benign(0.133) TCGA-2W-A8YY-01 18 56246131 56246131 C T ALPK2 Missense_Mutation p.G626D 0.21 tolerated(0.06) probably_damaging(0.947) TCGA-2W-A8YY-01 18 56247024 56247024 C A ALPK2 Missense_Mutation p.E328D 0.31 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 18 56377207 56377207 G A MALT1 Splice_Site p.X277_splice 0.40 TCGA-2W-A8YY-01 18 56390436 56390436 G A MALT1 Missense_Mutation p.R392H 0.16 tolerated(0.17) probably_damaging(0.945) TCGA-2W-A8YY-01 18 56651603 56651603 A C ZNF532 Missense_Mutation p.K1271Q 0.29 deleterious(0.02) probably_damaging(0.986) TCGA-2W-A8YY-01 18 56652853 56652853 G A ZNF532 3'UTR 0.19 TCGA-2W-A8YY-01 18 56985540 56985540 A G CPLX4 Missense_Mutation p.M52T 0.38 deleterious(0) benign(0.075) TCGA-2W-A8YY-01 18 57103356 57103356 G A CCBE1 Silent p.F335F 0.50 TCGA-2W-A8YY-01 18 58039945 58039945 A G MC4R 5'UTR 0.35 TCGA-2W-A8YY-01 18 5891628 5891628 G T TMEM200C Silent p.S145S 0.31 TCGA-2W-A8YY-01 18 5891948 5891948 C T TMEM200C Missense_Mutation p.V39M 0.38 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 18 59167718 59167718 C T CDH20 Missense_Mutation p.S215F 0.53 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 18 59221508 59221508 C T CDH20 Silent p.I662I 0.28 TCGA-2W-A8YY-01 18 59483633 59483633 G A RNF152 Missense_Mutation p.R22W 0.57 deleterious(0.04) probably_damaging(0.998) TCGA-2W-A8YY-01 18 59947059 59947059 C A KIAA1468 Intron 0.33 TCGA-2W-A8YY-01 18 60015414 60015414 T C TNFRSF11A Missense_Mutation p.I30T 0.13 deleterious(0) benign(0.372) TCGA-2W-A8YY-01 18 60209792 60209792 G A ZCCHC2 Nonsense_Mutation p.W371* 0.38 TCGA-2W-A8YY-01 18 60241483 60241483 C T ZCCHC2 Silent p.H723H 0.44 TCGA-2W-A8YY-01 18 60242682 60242682 C T ZCCHC2 Missense_Mutation p.S1123L 0.29 tolerated(0.07) probably_damaging(0.937) TCGA-2W-A8YY-01 18 60243793 60243793 C T ZCCHC2 Missense_Mutation p.T1173M 0.42 deleterious(0.01) possibly_damaging(0.902) TCGA-2W-A8YY-01 18 60630649 60630649 C T PHLPP1 Silent p.S1168S 0.31 TCGA-2W-A8YY-01 18 60642776 60642776 C T PHLPP1 Missense_Mutation p.P1301L 0.48 deleterious(0.01) probably_damaging(0.962) TCGA-2W-A8YY-01 18 60645689 60645689 C T PHLPP1 Silent p.P1393P 0.45 TCGA-2W-A8YY-01 18 60645909 60645909 C A PHLPP1 Missense_Mutation p.P1467T 0.36 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 18 60646446 60646446 C T PHLPP1 Nonsense_Mutation p.R1646* 0.31 TCGA-2W-A8YY-01 18 60985367 60985367 G T BCL2 Missense_Mutation p.T178N 0.15 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 18 60998083 60998083 A G KDSR 3'UTR 0.30 TCGA-2W-A8YY-01 18 60998914 60998914 G A KDSR 3'UTR 0.48 TCGA-2W-A8YY-01 18 61006104 61006104 G A KDSR Nonsense_Mutation p.R236* 0.09 TCGA-2W-A8YY-01 18 61232688 61232688 A C SERPINB12 Missense_Mutation p.K219T 0.27 tolerated(0.28) possibly_damaging(0.633) TCGA-2W-A8YY-01 18 61305269 61305269 C T SERPINB4 Missense_Mutation p.R286Q 0.30 tolerated(0.13) benign(0.364) TCGA-2W-A8YY-01 18 61309010 61309010 G A SERPINB4 Missense_Mutation p.T112M 0.20 deleterious(0.02) benign(0.044) TCGA-2W-A8YY-01 18 61322920 61322920 G T SERPINB3 Missense_Mutation p.L382I 0.44 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 18 61377583 61377583 G A SERPINB11 Silent p.E52E 0.44 TCGA-2W-A8YY-01 18 61390289 61390289 G A SERPINB11 Missense_Mutation p.E279K 0.28 tolerated(0.52) benign(0.359) TCGA-2W-A8YY-01 18 61569076 61569076 A G SERPINB2 Missense_Mutation p.E213G 0.40 tolerated(0.3) possibly_damaging(0.688) TCGA-2W-A8YY-01 18 61602349 61602349 G T SERPINB10 Missense_Mutation p.G356V 0.39 tolerated(0.08) probably_damaging(0.921) TCGA-2W-A8YY-01 18 61637261 61637261 C T SERPINB8 5'UTR 0.36 TCGA-2W-A8YY-01 18 64172205 64172205 G A CDH19 Silent p.Y721Y 0.30 TCGA-2W-A8YY-01 18 64172239 64172239 G A CDH19 Missense_Mutation p.P710L 0.29 tolerated(0.16) possibly_damaging(0.896) TCGA-2W-A8YY-01 18 64211295 64211295 A G CDH19 Missense_Mutation p.V376A 0.18 tolerated(0.15) benign(0.009) TCGA-2W-A8YY-01 18 65179227 65179228 - A DSEL Frame_Shift_Ins p.N884Qfs*3 0.47 TCGA-2W-A8YY-01 18 65179429 65179429 A G DSEL Missense_Mutation p.I816T 0.44 tolerated(0.26) benign(0.003) TCGA-2W-A8YY-01 18 65180404 65180404 C A DSEL Missense_Mutation p.G491V 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 18 65181574 65181574 C T DSEL Missense_Mutation p.R101K 0.42 tolerated(0.11) benign(0.023) TCGA-2W-A8YY-01 18 65181581 65181581 C T DSEL Missense_Mutation p.A99T 0.33 tolerated(0.27) benign(0.016) TCGA-2W-A8YY-01 18 66504556 66504556 G T CCDC102B Nonsense_Mutation p.E186* 0.42 TCGA-2W-A8YY-01 18 66542002 66542002 A G CCDC102B Missense_Mutation p.I345V 0.11 tolerated(0.14) benign(0.046) TCGA-2W-A8YY-01 18 67755330 67755330 G A RTTN Silent p.G1399G 0.39 TCGA-2W-A8YY-01 18 67843974 67843974 C A RTTN Missense_Mutation p.M471I 0.48 tolerated(0.08) possibly_damaging(0.447) TCGA-2W-A8YY-01 18 67992744 67992744 C T SOCS6 Silent p.F280F 0.42 TCGA-2W-A8YY-01 18 67994942 67994942 C A SOCS6 3'UTR 0.33 TCGA-2W-A8YY-01 18 690585 690585 G A ENOSF1 Silent p.C215C 0.27 TCGA-2W-A8YY-01 18 6956310 6956310 A G LAMA1 Intron 0.45 TCGA-2W-A8YY-01 18 70205574 70205574 G A CBLN2 Missense_Mutation p.S171L 0.26 deleterious(0) probably_damaging(0.972) TCGA-2W-A8YY-01 18 7049114 7049114 C T LAMA1 Missense_Mutation p.R244Q 0.39 deleterious(0.03) possibly_damaging(0.46) TCGA-2W-A8YY-01 18 7050864 7050864 A C LAMA1 Silent p.R139R 0.30 TCGA-2W-A8YY-01 18 70532814 70532814 G T NETO1 Intron 0.54 TCGA-2W-A8YY-01 18 71740773 71740773 C T FBXO15 Missense_Mutation p.E486K 0.33 tolerated(0.45) benign(0.096) TCGA-2W-A8YY-01 18 71930597 71930597 C T CYB5A Missense_Mutation p.G82E 0.27 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 18 72103862 72103862 C T FAM69C Silent p.A378A 0.37 TCGA-2W-A8YY-01 18 72173240 72173240 C T CNDP2 Nonsense_Mutation p.R121* 0.36 TCGA-2W-A8YY-01 18 72180860 72180860 C T CNDP2 Missense_Mutation p.T270M 0.12 deleterious(0.01) benign(0.415) TCGA-2W-A8YY-01 18 72187353 72187353 C A CNDP2 3'UTR 0.25 TCGA-2W-A8YY-01 18 72228167 72228167 T C CNDP1 Missense_Mutation p.V127A 0.34 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 18 722438 722438 T G YES1 3'UTR 0.33 TCGA-2W-A8YY-01 18 72250814 72250814 G T CNDP1 Missense_Mutation p.D443Y 0.51 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 18 72251743 72251743 T C CNDP1 Missense_Mutation p.I490T 0.34 deleterious(0.01) probably_damaging(0.969) TCGA-2W-A8YY-01 18 72251747 72251747 G A CNDP1 Silent p.E491E 0.46 TCGA-2W-A8YY-01 18 72344810 72344810 A C ZNF407 Missense_Mutation p.N612T 0.30 tolerated(0.21) benign(0.084) TCGA-2W-A8YY-01 18 72346684 72346684 G A ZNF407 Missense_Mutation p.A1237T 0.33 tolerated(0.59) benign(0.001) TCGA-2W-A8YY-01 18 72346734 72346734 G A ZNF407 Silent p.T1253T 0.64 TCGA-2W-A8YY-01 18 72776105 72776105 C T ZNF407 Missense_Mutation p.S2143L 0.38 deleterious(0) probably_damaging(0.92) TCGA-2W-A8YY-01 18 72776375 72776375 C T ZNF407 Missense_Mutation p.A2233V 0.38 deleterious(0) benign(0.147) TCGA-2W-A8YY-01 18 72910953 72910953 A - ZADH2 3'UTR 0.23 TCGA-2W-A8YY-01 18 72998010 72998010 G C TSHZ1 Silent p.L171L 0.50 TCGA-2W-A8YY-01 18 72998182 72998182 G A TSHZ1 Missense_Mutation p.D229N 0.09 tolerated(0.11) benign(0.044) TCGA-2W-A8YY-01 18 72999929 72999929 C T TSHZ1 Missense_Mutation p.S811F 0.27 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 18 74074343 74074343 C T ZNF516 3'UTR 0.35 TCGA-2W-A8YY-01 18 74092131 74092131 C T ZNF516 Missense_Mutation p.A647T 0.39 tolerated(0.53) benign(0.015) TCGA-2W-A8YY-01 18 74208360 74208360 C T RP11-17M16.1 Silent p.G68G 0.30 TCGA-2W-A8YY-01 18 74607062 74607062 G A ZNF236 Missense_Mutation p.R502H 0.13 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 18 74635111 74635111 T C ZNF236 Silent p.C1212C 0.35 TCGA-2W-A8YY-01 18 74649151 74649151 C T ZNF236 Missense_Mutation p.P1543L 0.33 deleterious(0) benign(0.184) TCGA-2W-A8YY-01 18 74668092 74668092 G A ZNF236 Missense_Mutation p.G1687D 0.17 tolerated(0.19) benign(0.191) TCGA-2W-A8YY-01 18 74672644 74672644 C T ZNF236 Missense_Mutation p.P1749L 0.38 deleterious(0) possibly_damaging(0.898) TCGA-2W-A8YY-01 18 74681238 74681238 G A ZNF236 3'UTR 0.35 TCGA-2W-A8YY-01 18 74681958 74681958 C T ZNF236 3'UTR 0.14 TCGA-2W-A8YY-01 18 74681959 74681959 G A ZNF236 3'UTR 0.39 TCGA-2W-A8YY-01 18 74817168 74817168 G A MBP Missense_Mutation p.T17M 0.25 deleterious_low_confidence(0.03) benign(0.003) TCGA-2W-A8YY-01 18 74962888 74962888 G A GALR1 Silent p.A128A 0.42 TCGA-2W-A8YY-01 18 76752145 76752145 G A SALL3 Missense_Mutation p.V52M 0.19 deleterious(0) unknown(0) TCGA-2W-A8YY-01 18 76753494 76753494 G A SALL3 Missense_Mutation p.M501I 0.37 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 18 76754385 76754385 C T SALL3 Silent p.D798D 0.33 TCGA-2W-A8YY-01 18 76754592 76754592 C T SALL3 Silent p.N867N 0.15 TCGA-2W-A8YY-01 18 76953186 76953187 - T ATP9B Frame_Shift_Ins p.S295Ffs*28 0.32 TCGA-2W-A8YY-01 18 77104323 77104323 G A ATP9B Missense_Mutation p.C814Y 0.46 tolerated(0.06) benign(0.222) TCGA-2W-A8YY-01 18 77137342 77137342 C T ATP9B Missense_Mutation p.R1135C 0.43 deleterious(0) possibly_damaging(0.899) TCGA-2W-A8YY-01 18 77211119 77211119 C T NFATC1 Silent p.I572I 0.23 TCGA-2W-A8YY-01 18 77227472 77227472 C T NFATC1 Missense_Mutation p.P648L 0.09 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 18 77227581 77227581 C T NFATC1 Silent p.N684N 0.45 TCGA-2W-A8YY-01 18 77227602 77227602 C T NFATC1 Intron 0.44 TCGA-2W-A8YY-01 18 77288765 77288765 C T NFATC1 3'UTR 0.38 TCGA-2W-A8YY-01 18 77474639 77474639 G T CTDP1 Silent p.R393R 0.46 TCGA-2W-A8YY-01 18 77477892 77477892 G A CTDP1 Missense_Mutation p.A765T 0.08 tolerated(0.21) benign(0.057) TCGA-2W-A8YY-01 18 77488928 77488928 G A CTDP1 Silent p.P813P 0.28 TCGA-2W-A8YY-01 18 77728107 77728107 G A HSBP1L1 Missense_Mutation p.R46H 0.33 tolerated(0.05) benign(0.11) TCGA-2W-A8YY-01 18 77733681 77733681 C T TXNL4A 3'UTR 0.50 TCGA-2W-A8YY-01 18 77806209 77806209 G A RBFA 3'UTR 0.44 TCGA-2W-A8YY-01 18 77894380 77894380 C T ADNP2 Missense_Mutation p.P362S 0.37 tolerated(0.16) benign(0.114) TCGA-2W-A8YY-01 18 77917915 77917915 G A PARD6G Silent p.P290P 0.41 TCGA-2W-A8YY-01 18 77917944 77917944 C T PARD6G Missense_Mutation p.A281T 0.37 tolerated(0.27) benign(0.004) TCGA-2W-A8YY-01 18 77918196 77918196 G A PARD6G Missense_Mutation p.R197C 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 18 77918320 77918320 C T PARD6G Silent p.T155T 0.14 TCGA-2W-A8YY-01 18 77960682 77960682 C T PARD6G Missense_Mutation p.G69E 0.43 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 18 77960687 77960687 C T PARD6G Silent p.V67V 0.37 TCGA-2W-A8YY-01 18 7949290 7949290 C T PTPRM Missense_Mutation p.R259C 0.31 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 18 8378278 8378278 A G PTPRM Missense_Mutation p.I1160V 0.36 tolerated(0.35) benign(0.024) TCGA-2W-A8YY-01 18 8638193 8638193 C T RAB12 Missense_Mutation p.S223L 0.43 tolerated(0.08) possibly_damaging(0.885) TCGA-2W-A8YY-01 18 8786032 8786032 C T SOGA2 Silent p.R610R 0.45 TCGA-2W-A8YY-01 18 9126907 9126907 T C NDUFV2 Splice_Site p.X219_splice 0.37 TCGA-2W-A8YY-01 18 9211680 9211680 C T ANKRD12 Missense_Mutation p.R184C 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 18 9256122 9256123 - A ANKRD12 Frame_Shift_Ins p.D955Rfs*6 0.28 TCGA-2W-A8YY-01 18 9282283 9282283 T G ANKRD12 3'UTR 0.11 TCGA-2W-A8YY-01 18 9283685 9283685 T C ANKRD12 3'UTR 0.33 TCGA-2W-A8YY-01 18 9396280 9396280 A G TWSG1 Missense_Mutation p.M76V 0.39 deleterious(0.01) benign(0.315) TCGA-2W-A8YY-01 18 9512988 9512988 G A RALBP1 Splice_Site 0.13 TCGA-2W-A8YY-01 18 9513090 9513090 G A RALBP1 Missense_Mutation p.R16H 0.20 tolerated_low_confidence(0.16) benign(0.028) TCGA-2W-A8YY-01 18 9525743 9525743 G A RALBP1 Missense_Mutation p.R414Q 0.09 tolerated(0.32) benign(0.004) TCGA-2W-A8YY-01 18 9530832 9530832 G C RALBP1 Missense_Mutation p.E450Q 0.17 tolerated(0.16) benign(0.011) TCGA-2W-A8YY-01 18 9887873 9887873 C T TXNDC2 Missense_Mutation p.A466V 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 18 9956542 9956542 G A VAPA 3'Flank 0.25 TCGA-2W-A8YY-01 19 10070337 10070337 G C COL5A3 3'UTR 0.12 TCGA-2W-A8YY-01 19 10116374 10116374 C T COL5A3 Missense_Mutation p.V152I 0.38 unknown(0) TCGA-2W-A8YY-01 19 10153932 10153932 C T MIR5589 3'Flank 0.31 TCGA-2W-A8YY-01 19 10165957 10165957 C T C3P1 RNA 0.39 TCGA-2W-A8YY-01 19 10221768 10221768 G A PPAN Intron 0.41 TCGA-2W-A8YY-01 19 10221877 10221877 G A PPAN Intron 0.53 TCGA-2W-A8YY-01 19 10247856 10247856 C T DNMT1 Missense_Mutation p.G1465D 0.16 deleterious(0.02) probably_damaging(0.957) TCGA-2W-A8YY-01 19 10252856 10252856 C T DNMT1 Missense_Mutation p.A1053T 0.43 tolerated(0.3) benign(0.013) TCGA-2W-A8YY-01 19 10265363 10265363 C T DNMT1 Silent p.V577V 0.28 TCGA-2W-A8YY-01 19 10265690 10265690 G A DNMT1 Missense_Mutation p.A512V 0.34 deleterious(0.01) possibly_damaging(0.559) TCGA-2W-A8YY-01 19 10335002 10335002 C T S1PR2 Missense_Mutation p.V194M 0.64 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 19 10369315 10369315 G A MRPL4 Silent p.V231V 0.14 TCGA-2W-A8YY-01 19 10395832 10395832 G A ICAM1 Missense_Mutation p.A490T 0.31 tolerated(0.16) benign(0.029) TCGA-2W-A8YY-01 19 10405156 10405156 C T ICAM5 Silent p.C690C 0.39 TCGA-2W-A8YY-01 19 10426974 10426974 T C RAVER1 3'UTR 0.34 TCGA-2W-A8YY-01 19 1043338 1043338 G A ABCA7 Missense_Mutation p.A266T 0.38 tolerated(0.08) benign(0.007) TCGA-2W-A8YY-01 19 10433866 10433866 G A RAVER1 Silent p.L362L 0.41 TCGA-2W-A8YY-01 19 10433941 10433941 G A RAVER1 Missense_Mutation p.R337W 0.46 deleterious(0) benign(0.022) TCGA-2W-A8YY-01 19 10449623 10449623 A G ICAM3 Silent p.G26G 0.40 TCGA-2W-A8YY-01 19 1045055 1045055 C T ABCA7 Missense_Mutation p.R424W 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 19 1050984 1050984 C T ABCA7 Missense_Mutation p.R873C 0.36 tolerated(0.06) benign(0.15) TCGA-2W-A8YY-01 19 1054631 1054631 C T ABCA7 Silent p.F1263F 0.33 TCGA-2W-A8YY-01 19 1054671 1054671 G A ABCA7 Missense_Mutation p.G1277S 0.41 deleterious(0.03) probably_damaging(0.911) TCGA-2W-A8YY-01 19 10663660 10663660 G A ATG4D Missense_Mutation p.A448T 0.32 tolerated(0.56) benign(0.002) TCGA-2W-A8YY-01 19 10668484 10668484 C T KRI1 Missense_Mutation p.A489T 0.34 tolerated(0.06) possibly_damaging(0.581) TCGA-2W-A8YY-01 19 10668662 10668662 C T KRI1 Missense_Mutation p.D455N 0.51 deleterious(0.01) probably_damaging(0.954) TCGA-2W-A8YY-01 19 10748590 10748590 T C SLC44A2 Missense_Mutation p.M585T 0.39 deleterious(0) benign(0.102) TCGA-2W-A8YY-01 19 10748729 10748729 C T SLC44A2 Silent p.F600F 0.43 TCGA-2W-A8YY-01 19 10753942 10753942 C T SLC44A2 Intron 0.26 TCGA-2W-A8YY-01 19 10795534 10795534 G T ILF3 Intron 0.12 TCGA-2W-A8YY-01 19 1080047 1080047 C T HMHA1 Missense_Mutation p.R561C 0.36 deleterious(0) benign(0.144) TCGA-2W-A8YY-01 19 10812379 10812379 G A QTRT1 Silent p.P81P 0.42 TCGA-2W-A8YY-01 19 10818006 10818006 C T QTRT1 Silent p.D160D 0.37 TCGA-2W-A8YY-01 19 10818274 10818274 G A QTRT1 Missense_Mutation p.R210Q 0.47 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 19 10887850 10887850 G A DNM2 Missense_Mutation p.A216T 0.40 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 19 11031170 11031170 C T CARM1 Missense_Mutation p.R419W 0.23 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 19 11033259 11033259 C T CARM1 3'UTR 0.47 TCGA-2W-A8YY-01 19 11040303 11040303 C A C19orf52 Silent p.V236V 0.39 TCGA-2W-A8YY-01 19 11100004 11100004 G A SMARCA4 Missense_Mutation p.R377H 0.24 possibly_damaging(0.832) TCGA-2W-A8YY-01 19 11101830 11101830 G A SMARCA4 Missense_Mutation p.R417H 0.41 probably_damaging(0.993) TCGA-2W-A8YY-01 19 1112211 1112211 C T SBNO2 Missense_Mutation p.V869M 0.41 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 19 11132437 11132437 C T SMARCA4 Missense_Mutation p.R885C 0.41 probably_damaging(0.998) TCGA-2W-A8YY-01 19 11132514 11132514 G A SMARCA4 Silent p.T910T 0.11 TCGA-2W-A8YY-01 19 1113611 1113611 G A SBNO2 Missense_Mutation p.R724W 0.10 deleterious(0.01) possibly_damaging(0.462) TCGA-2W-A8YY-01 19 11144076 11144076 G A SMARCA4 Silent p.K1219K 0.42 TCGA-2W-A8YY-01 19 11200086 11200086 C A LDLR 5'UTR 0.41 TCGA-2W-A8YY-01 19 11213463 11213463 G A LDLR Splice_Site p.X105_splice 0.21 TCGA-2W-A8YY-01 19 1122937 1122937 C T SBNO2 Missense_Mutation p.A246T 0.33 tolerated(0.36) benign(0.005) TCGA-2W-A8YY-01 19 11258760 11258760 C T SPC24 Silent p.E113E 0.41 TCGA-2W-A8YY-01 19 11289103 11289103 G A KANK2 Nonsense_Mutation p.R488* 0.41 TCGA-2W-A8YY-01 19 11303820 11303820 G A KANK2 Silent p.D312D 0.33 TCGA-2W-A8YY-01 19 11304520 11304520 G A KANK2 Missense_Mutation p.S79F 0.41 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 19 11311438 11311438 G A DOCK6 Missense_Mutation p.R1965W 0.32 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 19 11323993 11323993 C A DOCK6 Silent p.L1450L 0.34 TCGA-2W-A8YY-01 19 11326109 11326109 G A DOCK6 Missense_Mutation p.R1354W 0.47 deleterious(0) possibly_damaging(0.762) TCGA-2W-A8YY-01 19 11332567 11332567 C T DOCK6 Silent p.S1170S 0.43 TCGA-2W-A8YY-01 19 11342896 11342896 G A DOCK6 Intron 0.35 TCGA-2W-A8YY-01 19 11348221 11348221 G T DOCK6 Missense_Mutation p.L662M 0.35 tolerated(0.12) possibly_damaging(0.513) TCGA-2W-A8YY-01 19 11354044 11354044 T G DOCK6 Missense_Mutation p.T426P 0.10 tolerated(0.12) benign(0.001) TCGA-2W-A8YY-01 19 11354056 11354056 G A DOCK6 Missense_Mutation p.R422W 0.29 deleterious(0) benign(0.011) TCGA-2W-A8YY-01 19 11354269 11354269 C T DOCK6 Missense_Mutation p.A408T 0.31 tolerated(0.12) benign(0.012) TCGA-2W-A8YY-01 19 11408971 11408971 G A TSPAN16 Missense_Mutation p.G75R 0.15 tolerated(0.1) benign(0.391) TCGA-2W-A8YY-01 19 11411814 11411814 C T TSPAN16 Intron 0.36 TCGA-2W-A8YY-01 19 11426494 11426494 C A TSPAN16 Intron 0.09 TCGA-2W-A8YY-01 19 11461536 11461536 C T CCDC159 Silent p.G93G 0.34 TCGA-2W-A8YY-01 19 11488578 11488578 C T EPOR 3'UTR 0.14 TCGA-2W-A8YY-01 19 11505000 11505000 G - RGL3 3'Flank 0.25 TCGA-2W-A8YY-01 19 11537558 11537558 G A CCDC151 Missense_Mutation p.A220V 0.34 tolerated(0.25) benign(0.077) TCGA-2W-A8YY-01 19 11548779 11548779 C T PRKCSH Silent p.N93N 0.26 TCGA-2W-A8YY-01 19 11559086 11559086 G A PRKCSH Silent p.K385K 0.48 TCGA-2W-A8YY-01 19 11594402 11594402 G A ZNF653 3'UTR 0.43 TCGA-2W-A8YY-01 19 11594434 11594434 C T ZNF653 3'UTR 0.30 TCGA-2W-A8YY-01 19 11594585 11594585 G A ZNF653 Missense_Mutation p.T587M 0.12 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 19 11618639 11618639 C T ECSIT Missense_Mutation p.A275T 0.60 tolerated(0.05) possibly_damaging(0.842) TCGA-2W-A8YY-01 19 11618855 11618855 C T ECSIT Silent p.L249L 0.30 TCGA-2W-A8YY-01 19 11688037 11688037 A G ACP5 Silent p.G32G 0.49 TCGA-2W-A8YY-01 19 11728467 11728467 A C ZNF627 Missense_Mutation p.R383S 0.37 deleterious(0.03) possibly_damaging(0.62) TCGA-2W-A8YY-01 19 11728523 11728523 G A ZNF627 Missense_Mutation p.R402H 0.34 tolerated(0.53) benign(0.141) TCGA-2W-A8YY-01 19 11728621 11728621 C T ZNF627 Nonsense_Mutation p.R435* 0.42 TCGA-2W-A8YY-01 19 11892369 11892369 A G ZNF441 Missense_Mutation p.H577R 0.27 deleterious(0) possibly_damaging(0.824) TCGA-2W-A8YY-01 19 11917460 11917460 A G ZNF491 Missense_Mutation p.H231R 0.35 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 19 11917976 11917976 G T ZNF491 Missense_Mutation p.R403I 0.91 deleterious(0.02) probably_damaging(0.956) TCGA-2W-A8YY-01 19 11942235 11942235 G T ZNF440 Nonsense_Mutation p.E82* 0.09 TCGA-2W-A8YY-01 19 11943653 11943654 - CC ZNF440 Frame_Shift_Ins p.H556Pfs*8 0.38 TCGA-2W-A8YY-01 19 11944915 11944915 C T ZNF440 3'UTR 0.38 TCGA-2W-A8YY-01 19 11977044 11977044 G A ZNF439 Missense_Mutation p.A25T 0.26 tolerated(0.11) probably_damaging(0.999) TCGA-2W-A8YY-01 19 12060110 12060110 G A ZNF700 Missense_Mutation p.G424E 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-2W-A8YY-01 19 12125872 12125872 G A ZNF433 Nonsense_Mutation p.R604* 0.20 TCGA-2W-A8YY-01 19 12244656 12244656 C T ZNF20 Silent p.T115T 0.38 TCGA-2W-A8YY-01 19 12256283 12256283 C T ZNF625 Silent p.S316S 0.16 TCGA-2W-A8YY-01 19 12256942 12256942 G T ZNF625 Missense_Mutation p.P97T 0.08 tolerated(0.59) benign(0.002) TCGA-2W-A8YY-01 19 1230989 1230989 G A C19orf26 Missense_Mutation p.S422L 0.31 tolerated_low_confidence(0.34) benign(0) TCGA-2W-A8YY-01 19 1235042 1235042 G A C19orf26 Missense_Mutation p.A138V 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 19 12384053 12384053 A T ZNF44 Nonsense_Mutation p.C387* 0.38 TCGA-2W-A8YY-01 19 12384420 12384420 C A ZNF44 Missense_Mutation p.R265I 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 19 12542023 12542023 G A ZNF443 Silent p.S321S 0.42 TCGA-2W-A8YY-01 19 1255457 1255457 G A MIDN Missense_Mutation p.R298Q 0.44 deleterious(0) benign(0.007) TCGA-2W-A8YY-01 19 12637619 12637619 T G ZNF564 Silent p.R435R 0.37 TCGA-2W-A8YY-01 19 12637949 12637949 G A ZNF564 Nonsense_Mutation p.R325* 0.42 TCGA-2W-A8YY-01 19 12691234 12691234 C T ZNF490 3'UTR 0.18 TCGA-2W-A8YY-01 19 12721395 12721395 C A ZNF490 Missense_Mutation p.G34W 0.23 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-2W-A8YY-01 19 12739771 12739771 C T ZNF791 Silent p.A476A 0.41 TCGA-2W-A8YY-01 19 12769085 12769085 G A MAN2B1 Missense_Mutation p.R395W 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 12786696 12786696 C T DHPS Missense_Mutation p.A356T 0.30 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 19 12788112 12788112 G A DHPS Silent p.I259I 0.21 TCGA-2W-A8YY-01 19 12867015 12867015 T C BEST2 Missense_Mutation p.Y337H 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-2W-A8YY-01 19 12874397 12874397 C A HOOK2 Missense_Mutation p.S652I 0.42 tolerated(0.1) benign(0.062) TCGA-2W-A8YY-01 19 12878708 12878708 C T HOOK2 Missense_Mutation p.A409T 0.44 tolerated(0.71) benign(0.008) TCGA-2W-A8YY-01 19 12880790 12880790 G A HOOK2 Missense_Mutation p.R337C 0.27 tolerated(0.07) benign(0.032) TCGA-2W-A8YY-01 19 12885472 12885472 C T HOOK2 Intron 0.39 TCGA-2W-A8YY-01 19 12903588 12903588 G A JUNB Missense_Mutation p.G335S 0.31 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 19 12911818 12911818 C T PRDX2 Missense_Mutation p.A57T 0.26 deleterious(0.01) possibly_damaging(0.462) TCGA-2W-A8YY-01 19 12937235 12937235 C T RTBDN Intron 0.32 TCGA-2W-A8YY-01 19 12980027 12980027 G A MAST1 Missense_Mutation p.G974D 0.28 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 12985699 12985699 G A MAST1 3'UTR 0.27 TCGA-2W-A8YY-01 19 13034966 13034966 G A FARSA Missense_Mutation p.R463C 0.09 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 13041256 13041256 C T FARSA Missense_Mutation p.R124Q 0.37 tolerated(0.44) benign(0.128) TCGA-2W-A8YY-01 19 13059951 13059951 G A RAD23A Silent p.S219S 0.47 TCGA-2W-A8YY-01 19 13207874 13207874 A - NFIX 3'Flank 0.45 TCGA-2W-A8YY-01 19 13210379 13210379 G A LYL1 Silent p.I199I 0.22 TCGA-2W-A8YY-01 19 13319580 13319580 G A CACNA1A Missense_Mutation p.A2257V 0.67 benign(0.008) TCGA-2W-A8YY-01 19 13873434 13873434 C T CCDC130 Missense_Mutation p.T248I 0.57 tolerated(0.11) possibly_damaging(0.653) TCGA-2W-A8YY-01 19 13873592 13873592 C T CCDC130 Missense_Mutation p.R301W 0.44 deleterious(0.02) probably_damaging(0.94) TCGA-2W-A8YY-01 19 13883083 13883083 A G MRI1 Silent p.G366G 0.42 TCGA-2W-A8YY-01 19 13923943 13923943 G A ZSWIM4 Missense_Mutation p.G382D 0.53 tolerated(0.64) probably_damaging(0.969) TCGA-2W-A8YY-01 19 1393171 1393171 C T NDUFS7 Intron 0.52 TCGA-2W-A8YY-01 19 13936494 13936494 G A ZSWIM4 Silent p.T665T 0.49 TCGA-2W-A8YY-01 19 13985801 13985801 G A NANOS3 5'Flank 0.44 TCGA-2W-A8YY-01 19 13993742 13993742 C T C19orf57 Missense_Mutation p.R596Q 0.36 deleterious(0) probably_damaging(0.947) TCGA-2W-A8YY-01 19 14023343 14023343 G A CC2D1A Silent p.A105A 0.25 TCGA-2W-A8YY-01 19 14024306 14024306 G A CC2D1A Silent p.P201P 0.35 TCGA-2W-A8YY-01 19 14074023 14074023 G A RFX1 Missense_Mutation p.R879W 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 14074805 14074805 G A RFX1 Silent p.G742G 0.50 TCGA-2W-A8YY-01 19 14079674 14079674 C T RFX1 Missense_Mutation p.R510H 0.40 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 19 14094308 14094308 C T RFX1 Missense_Mutation p.G140D 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.603) TCGA-2W-A8YY-01 19 14164726 14164726 C A PALM3 Missense_Mutation p.E571D 0.14 deleterious(0.01) benign(0.416) TCGA-2W-A8YY-01 19 14199591 14199591 G A SAMD1 Silent p.P344P 0.36 TCGA-2W-A8YY-01 19 14208433 14208433 G A PRKACA Silent p.C200C 0.34 TCGA-2W-A8YY-01 19 14232460 14232460 G A ASF1B Missense_Mutation p.L96F 0.37 deleterious(0.03) possibly_damaging(0.682) TCGA-2W-A8YY-01 19 14262299 14262299 C T LPHN1 Missense_Mutation p.G1271S 0.12 deleterious(0.01) benign(0.082) TCGA-2W-A8YY-01 19 14268195 14268195 G A LPHN1 Silent p.A876A 0.14 TCGA-2W-A8YY-01 19 1430343 1430343 G A DAZAP1 Missense_Mutation p.G285S 0.29 tolerated(0.24) unknown(0) TCGA-2W-A8YY-01 19 1435035 1435035 C T DAZAP1 3'UTR 0.34 TCGA-2W-A8YY-01 19 14517356 14517356 G A CD97 Missense_Mutation p.G679S 0.21 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 19 14520191 14520191 C T DDX39A Missense_Mutation p.R348Q 0.39 deleterious(0.05) benign(0.177) TCGA-2W-A8YY-01 19 14520763 14520763 C T DDX39A Intron 0.29 TCGA-2W-A8YY-01 19 14521941 14521941 T G DDX39A Missense_Mutation p.E158A 0.43 tolerated(0.28) benign(0.006) TCGA-2W-A8YY-01 19 1460800 1460800 G A APC2 Missense_Mutation p.G489S 0.32 possibly_damaging(0.86) TCGA-2W-A8YY-01 19 1462052 1462052 G A APC2 Missense_Mutation p.A577T 0.21 possibly_damaging(0.861) TCGA-2W-A8YY-01 19 14655985 14655985 G A TECR Intron 0.09 TCGA-2W-A8YY-01 19 14674700 14674700 G T TECR Missense_Mutation p.Q84H 0.36 deleterious(0) probably_damaging(0.954) TCGA-2W-A8YY-01 19 14674818 14674818 C T TECR Missense_Mutation p.P98S 0.40 deleterious(0.01) benign(0.323) TCGA-2W-A8YY-01 19 14675044 14675044 C T TECR Missense_Mutation p.T145M 0.38 deleterious(0) possibly_damaging(0.849) TCGA-2W-A8YY-01 19 14675086 14675086 G A TECR Missense_Mutation p.R159H 0.31 tolerated(0.09) probably_damaging(0.956) TCGA-2W-A8YY-01 19 14675622 14675622 G A TECR Missense_Mutation p.A172T 0.32 tolerated(0.26) benign(0.365) TCGA-2W-A8YY-01 19 14682780 14682780 G A NDUFB7 Silent p.G11G 0.39 TCGA-2W-A8YY-01 19 14819230 14819230 G A ZNF333 Intron 0.19 TCGA-2W-A8YY-01 19 14866522 14866522 T C EMR2 Missense_Mutation p.S454G 0.50 deleterious(0.01) benign(0.016) TCGA-2W-A8YY-01 19 14938562 14938562 T C OR7A5 Silent p.V164V 0.25 TCGA-2W-A8YY-01 19 15218298 15218298 A G SYDE1 Silent p.K18K 0.47 TCGA-2W-A8YY-01 19 15220152 15220152 C A SYDE1 Missense_Mutation p.P125H 0.40 deleterious(0.01) benign(0.332) TCGA-2W-A8YY-01 19 15228808 15228808 C T ILVBL Missense_Mutation p.R357H 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 15229992 15229992 C T ILVBL Missense_Mutation p.V346I 0.43 deleterious(0.05) possibly_damaging(0.733) TCGA-2W-A8YY-01 19 15233830 15233830 C T ILVBL Silent p.A159A 0.37 TCGA-2W-A8YY-01 19 15281256 15281256 C T NOTCH3 Missense_Mutation p.R1667H 0.29 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 15285186 15285186 C T NOTCH3 Missense_Mutation p.D1477N 0.47 deleterious(0.04) probably_damaging(0.969) TCGA-2W-A8YY-01 19 15288417 15288417 C T NOTCH3 Missense_Mutation p.R1441H 0.44 tolerated(0.36) benign(0.021) TCGA-2W-A8YY-01 19 15291600 15291600 C T NOTCH3 Missense_Mutation p.G1012R 0.46 deleterious(0.04) possibly_damaging(0.67) TCGA-2W-A8YY-01 19 15292520 15292520 C T NOTCH3 Missense_Mutation p.D887N 0.40 tolerated(0.07) possibly_damaging(0.838) TCGA-2W-A8YY-01 19 15292526 15292526 C T NOTCH3 Missense_Mutation p.A885T 0.46 tolerated(0.06) benign(0.037) TCGA-2W-A8YY-01 19 15292590 15292590 C T NOTCH3 Silent p.S863S 0.36 TCGA-2W-A8YY-01 19 15298719 15298719 C T NOTCH3 Missense_Mutation p.D527N 0.43 tolerated(1) benign(0.085) TCGA-2W-A8YY-01 19 15300096 15300096 C T NOTCH3 Missense_Mutation p.E394K 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 15303199 15303199 C T NOTCH3 Missense_Mutation p.R110H 0.35 tolerated(0.44) probably_damaging(0.95) TCGA-2W-A8YY-01 19 15349885 15349885 C T BRD4 Missense_Mutation p.R1256Q 0.38 benign(0.238) TCGA-2W-A8YY-01 19 15350532 15350532 G A BRD4 Missense_Mutation p.S1128L 0.35 benign(0.177) TCGA-2W-A8YY-01 19 15379729 15379729 T C BRD4 Missense_Mutation p.Y137C 0.43 unknown(0) TCGA-2W-A8YY-01 19 15491161 15491161 C T AKAP8L Silent p.A571A 0.45 TCGA-2W-A8YY-01 19 15514356 15514356 G A AKAP8L Missense_Mutation p.R98C 0.35 deleterious(0) probably_damaging(0.912) TCGA-2W-A8YY-01 19 15536221 15536221 C T WIZ Silent p.T480T 0.40 TCGA-2W-A8YY-01 19 15538261 15538261 C T WIZ Missense_Mutation p.A205T 0.28 deleterious(0) possibly_damaging(0.889) TCGA-2W-A8YY-01 19 15540594 15540594 G A WIZ Intron 0.35 TCGA-2W-A8YY-01 19 15540853 15540853 G A WIZ Intron 0.33 TCGA-2W-A8YY-01 19 15547742 15547742 C T WIZ Missense_Mutation p.S135N 0.41 tolerated(0.38) benign(0.148) TCGA-2W-A8YY-01 19 1555145 1555145 C T MEX3D 3'UTR 0.21 TCGA-2W-A8YY-01 19 1556546 1556546 G A MEX3D Silent p.P324P 0.35 TCGA-2W-A8YY-01 19 15728898 15728898 A C AD000091.2 5'Flank 0.40 TCGA-2W-A8YY-01 19 1574972 1574972 A G MBD3 3'Flank 0.39 TCGA-2W-A8YY-01 19 1575199 1575199 C T MBD3 3'Flank 0.27 TCGA-2W-A8YY-01 19 15758046 15758046 G A CYP4F3 Missense_Mutation p.R146H 0.37 tolerated(0.25) benign(0.117) TCGA-2W-A8YY-01 19 15784476 15784476 G A CYP4F12 Missense_Mutation p.R46H 0.18 tolerated(0.18) benign(0.022) TCGA-2W-A8YY-01 19 15839092 15839092 G A OR10H2 Missense_Mutation p.R80H 0.14 deleterious(0.03) benign(0.046) TCGA-2W-A8YY-01 19 15918609 15918609 C T OR10H1 Missense_Mutation p.R80H 0.39 deleterious(0.03) benign(0.021) TCGA-2W-A8YY-01 19 16060750 16060750 C A OR10H4 Missense_Mutation p.F311L 0.47 tolerated(0.83) benign(0.002) TCGA-2W-A8YY-01 19 16137001 16137001 C T LINC00661 RNA 0.35 TCGA-2W-A8YY-01 19 16146382 16146382 C T LINC00905 RNA 0.26 TCGA-2W-A8YY-01 19 1615786 1615786 G A TCF3 Silent p.S495S 0.39 TCGA-2W-A8YY-01 19 1619208 1619208 C T TCF3 Missense_Mutation p.G451D 0.26 deleterious(0) possibly_damaging(0.493) TCGA-2W-A8YY-01 19 16198856 16198856 T C TPM4 Missense_Mutation p.I171T 0.38 deleterious(0.03) possibly_damaging(0.744) TCGA-2W-A8YY-01 19 16243222 16243222 C T RAB8A 3'UTR 0.25 TCGA-2W-A8YY-01 19 16263984 16263984 C T HSH2D 3'UTR 0.25 TCGA-2W-A8YY-01 19 16318922 16318922 C T AP1M1 Silent p.F120F 0.29 TCGA-2W-A8YY-01 19 16338969 16338969 G A AP1M1 Missense_Mutation p.E292K 0.23 deleterious(0.01) possibly_damaging(0.904) TCGA-2W-A8YY-01 19 16339620 16339620 G A AP1M1 Missense_Mutation p.V322M 0.39 deleterious(0.02) probably_damaging(0.993) TCGA-2W-A8YY-01 19 16345333 16345333 C T AP1M1 3'UTR 0.21 TCGA-2W-A8YY-01 19 16437717 16437717 C T KLF2 Missense_Mutation p.R315C 0.11 deleterious(0) unknown(0) TCGA-2W-A8YY-01 19 16437818 16437818 G A KLF2 Silent p.A348A 0.46 TCGA-2W-A8YY-01 19 16438229 16438229 G A KLF2 3'UTR 0.56 TCGA-2W-A8YY-01 19 16472760 16472760 C A EPS15L1 Missense_Mutation p.D806Y 0.31 deleterious(0.03) benign(0.336) TCGA-2W-A8YY-01 19 1650264 1650264 C T TCF3 5'UTR 0.08 TCGA-2W-A8YY-01 19 16594908 16594908 G A CALR3 Silent p.L171L 0.40 TCGA-2W-A8YY-01 19 16611911 16611911 G A C19orf44 Missense_Mutation p.R103Q 0.27 deleterious(0.01) benign(0.31) TCGA-2W-A8YY-01 19 16630990 16630990 C T CHERP Missense_Mutation p.R811H 0.36 tolerated(0.2) unknown(0) TCGA-2W-A8YY-01 19 16633934 16633934 C T CHERP Missense_Mutation p.D637N 0.31 tolerated(0.09) benign(0.058) TCGA-2W-A8YY-01 19 16643452 16643452 G A CHERP Missense_Mutation p.R211W 0.36 deleterious(0) probably_damaging(0.913) TCGA-2W-A8YY-01 19 16678892 16678892 G A SLC35E1 Missense_Mutation p.A194V 0.37 deleterious(0.03) probably_damaging(0.982) TCGA-2W-A8YY-01 19 16685814 16685814 G A MED26 3'UTR 0.10 TCGA-2W-A8YY-01 19 16687135 16687135 C T MED26 Silent p.A502A 0.40 TCGA-2W-A8YY-01 19 16687703 16687703 G A MED26 Missense_Mutation p.P313L 0.28 tolerated(0.14) possibly_damaging(0.656) TCGA-2W-A8YY-01 19 16790932 16790932 C A TMEM38A Missense_Mutation p.L88M 0.19 deleterious(0.04) probably_damaging(0.971) TCGA-2W-A8YY-01 19 16798980 16798980 A G TMEM38A Missense_Mutation p.H233R 0.38 tolerated(0.41) possibly_damaging(0.661) TCGA-2W-A8YY-01 19 16799269 16799269 C A TMEM38A 3'UTR 0.45 TCGA-2W-A8YY-01 19 16842058 16842058 C T NWD1 Missense_Mutation p.T17I 0.19 deleterious(0.01) benign(0.28) TCGA-2W-A8YY-01 19 16855479 16855479 G A NWD1 Missense_Mutation p.R149Q 0.42 tolerated(0.48) benign(0.002) TCGA-2W-A8YY-01 19 16861197 16861197 G A NWD1 Missense_Mutation p.V582M 0.28 deleterious(0.05) benign(0.092) TCGA-2W-A8YY-01 19 16890214 16890214 G A NWD1 Missense_Mutation p.G890D 0.29 deleterious(0.01) benign(0.273) TCGA-2W-A8YY-01 19 16918598 16918598 G A NWD1 Missense_Mutation p.R1313H 0.10 tolerated(0.33) benign(0.013) TCGA-2W-A8YY-01 19 16942424 16942424 G A SIN3B Missense_Mutation p.G116D 0.31 tolerated(0.62) benign(0.003) TCGA-2W-A8YY-01 19 16957807 16957807 G T SIN3B Silent p.R203R 0.34 TCGA-2W-A8YY-01 19 16973351 16973351 G A SIN3B Missense_Mutation p.R416K 0.50 deleterious(0) probably_damaging(0.91) TCGA-2W-A8YY-01 19 16974584 16974584 C T SIN3B Missense_Mutation p.R486C 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 19 16976349 16976349 G A SIN3B Silent p.S536S 0.35 TCGA-2W-A8YY-01 19 16980287 16980287 C T SIN3B Missense_Mutation p.S640L 0.48 deleterious(0.02) benign(0.155) TCGA-2W-A8YY-01 19 16988409 16988409 G A SIN3B Silent p.S1003S 0.20 TCGA-2W-A8YY-01 19 17000010 17000010 C T F2RL3 Nonsense_Mutation p.R4* 0.32 TCGA-2W-A8YY-01 19 17001254 17001254 C T F2RL3 Missense_Mutation p.A327V 0.52 tolerated(0.05) probably_damaging(0.954) TCGA-2W-A8YY-01 19 17062850 17062850 C T CPAMD8 Missense_Mutation p.A860T 0.50 tolerated(0.3) benign(0.009) TCGA-2W-A8YY-01 19 17170368 17170368 G A HAUS8 Missense_Mutation p.P140L 0.56 tolerated(0.08) benign(0.286) TCGA-2W-A8YY-01 19 17270248 17270248 C T MYO9B Missense_Mutation p.T458M 0.32 deleterious(0.03) probably_damaging(0.982) TCGA-2W-A8YY-01 19 17313014 17313014 C T MYO9B Missense_Mutation p.R1580C 0.33 deleterious(0.01) possibly_damaging(0.841) TCGA-2W-A8YY-01 19 17317061 17317061 C T MYO9B Silent p.P1754P 0.50 TCGA-2W-A8YY-01 19 17321642 17321642 C T MYO9B Missense_Mutation p.S1972F 0.44 deleterious(0) probably_damaging(0.933) TCGA-2W-A8YY-01 19 17342844 17342844 G A NR2F6 3'UTR 0.40 TCGA-2W-A8YY-01 19 17366252 17366252 C T USHBP1 Missense_Mutation p.S545N 0.42 tolerated(0.09) possibly_damaging(0.711) TCGA-2W-A8YY-01 19 17375058 17375058 T C USHBP1 Silent p.P17P 0.30 TCGA-2W-A8YY-01 19 17384980 17384980 C T BABAM1 Missense_Mutation p.S177F 0.35 tolerated(0.05) benign(0.111) TCGA-2W-A8YY-01 19 17389918 17389918 C A BABAM1 3'UTR 0.40 TCGA-2W-A8YY-01 19 17405231 17405231 G A ABHD8 Missense_Mutation p.R339W 0.38 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 19 17434267 17434267 C T ANO8 3'UTR 0.56 TCGA-2W-A8YY-01 19 17441741 17441741 G A ANO8 Silent p.L297L 0.38 TCGA-2W-A8YY-01 19 17476561 17476561 C T PLVAP Missense_Mutation p.R238H 0.47 tolerated(0.08) possibly_damaging(0.85) TCGA-2W-A8YY-01 19 17476738 17476738 C T PLVAP Missense_Mutation p.C179Y 0.59 deleterious(0.01) probably_damaging(0.972) TCGA-2W-A8YY-01 19 17476941 17476941 C A PLVAP Missense_Mutation p.D145Y 0.12 deleterious(0) possibly_damaging(0.575) TCGA-2W-A8YY-01 19 17628154 17628154 G A PGLS Missense_Mutation p.D152N 0.41 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 19 17660311 17660311 G T FAM129C Missense_Mutation p.E606D 0.37 tolerated(0.24) benign(0.001) TCGA-2W-A8YY-01 19 17691561 17691561 G A COLGALT1 Missense_Mutation p.R483H 0.41 tolerated(0.09) benign(0.005) TCGA-2W-A8YY-01 19 17716084 17716084 G A UNC13A 3'UTR 0.31 TCGA-2W-A8YY-01 19 17751422 17751422 G A UNC13A Silent p.A895A 0.46 TCGA-2W-A8YY-01 19 17845098 17845099 - T MAP1S Frame_Shift_Ins p.D1016Rfs*35 0.26 TCGA-2W-A8YY-01 19 1787167 1787167 A G ATP8B3 Missense_Mutation p.F1030L 0.30 deleterious(0) possibly_damaging(0.69) TCGA-2W-A8YY-01 19 17922653 17922653 G A B3GNT3 Missense_Mutation p.A281T 0.38 tolerated(0.65) benign(0.007) TCGA-2W-A8YY-01 19 17950432 17950432 C T JAK3 Missense_Mutation p.R432H 0.46 tolerated(0.08) benign(0.23) TCGA-2W-A8YY-01 19 1796083 1796083 C T ATP8B3 Silent p.S645S 0.51 TCGA-2W-A8YY-01 19 17988671 17988671 C A SLC5A5 Missense_Mutation p.L280M 0.38 tolerated(0.21) possibly_damaging(0.758) TCGA-2W-A8YY-01 19 18054151 18054151 C T CCDC124 Missense_Mutation p.A144V 0.45 deleterious(0) possibly_damaging(0.7) TCGA-2W-A8YY-01 19 1811539 1811539 C T ATP8B3 Missense_Mutation p.R66K 0.50 tolerated(0.13) benign(0.003) TCGA-2W-A8YY-01 19 1811573 1811573 C T ATP8B3 Missense_Mutation p.G55R 0.29 deleterious(0.03) probably_damaging(0.92) TCGA-2W-A8YY-01 19 18119820 18119820 C T ARRDC2 Missense_Mutation p.R128C 0.23 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 19 18121509 18121509 C T ARRDC2 Missense_Mutation p.R381C 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 1815991 1815991 G A REXO1 3'UTR 0.35 TCGA-2W-A8YY-01 19 1817736 1817736 G A REXO1 Silent p.A1020A 0.28 TCGA-2W-A8YY-01 19 18182939 18182939 G T IL12RB1 Missense_Mutation p.P335H 0.48 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 19 18187135 18187135 G A IL12RB1 Silent p.G184G 0.35 TCGA-2W-A8YY-01 19 18252725 18252725 C T MAST3 Missense_Mutation p.P718S 0.34 tolerated_low_confidence(0.8) benign(0.002) TCGA-2W-A8YY-01 19 18260120 18260120 C T MAST3 Missense_Mutation p.R1172C 0.42 deleterious(0.02) probably_damaging(0.964) TCGA-2W-A8YY-01 19 18260170 18260170 G A MAST3 Silent p.P1188P 0.38 TCGA-2W-A8YY-01 19 18266888 18266888 C T PIK3R2 Nonsense_Mutation p.R67* 0.14 TCGA-2W-A8YY-01 19 1827171 1827171 C T REXO1 Nonsense_Mutation p.W539* 0.43 TCGA-2W-A8YY-01 19 1827517 1827517 C T REXO1 Missense_Mutation p.R424Q 0.44 tolerated(0.18) benign(0.011) TCGA-2W-A8YY-01 19 18375986 18375986 G A KIAA1683 Silent p.L788L 0.13 TCGA-2W-A8YY-01 19 18418116 18418116 C T LSM4 3'UTR 0.25 TCGA-2W-A8YY-01 19 18453700 18453700 C T PGPEP1 Silent p.N22N 0.32 TCGA-2W-A8YY-01 19 18499182 18499182 C T GDF15 Missense_Mutation p.R122W 0.35 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 19 18538757 18538757 G A SSBP4 Missense_Mutation p.E82K 0.30 deleterious(0.01) possibly_damaging(0.746) TCGA-2W-A8YY-01 19 18546115 18546115 G A ISYNA1 Missense_Mutation p.A478V 0.46 deleterious(0.01) probably_damaging(0.952) TCGA-2W-A8YY-01 19 18561479 18561479 G T ELL Missense_Mutation p.L425I 0.12 tolerated(0.16) benign(0.219) TCGA-2W-A8YY-01 19 18562388 18562388 G A ELL Missense_Mutation p.R314C 0.55 deleterious(0.05) benign(0.39) TCGA-2W-A8YY-01 19 18680084 18680084 G A KXD1 3'UTR 0.38 TCGA-2W-A8YY-01 19 1877048 1877048 C T ABHD17A 3'UTR 0.27 TCGA-2W-A8YY-01 19 18779939 18779939 G A KLHL26 Missense_Mutation p.V578I 0.11 deleterious(0.03) possibly_damaging(0.63) TCGA-2W-A8YY-01 19 1881437 1881437 C T ABHD17A Silent p.P43P 0.28 TCGA-2W-A8YY-01 19 18898394 18898394 C T COMP Silent p.A347A 0.27 TCGA-2W-A8YY-01 19 18968235 18968235 G A UPF1 Missense_Mutation p.G692D 0.57 deleterious(0.02) possibly_damaging(0.707) TCGA-2W-A8YY-01 19 18974253 18974253 C T UPF1 Silent p.G869G 0.29 TCGA-2W-A8YY-01 19 19016677 19016677 G A COPE Intron 0.26 TCGA-2W-A8YY-01 19 19035478 19035478 G A DDX49 Missense_Mutation p.R300Q 0.46 tolerated(0.21) benign(0.065) TCGA-2W-A8YY-01 19 1913009 1913009 C T ADAT3 Silent p.R321R 0.28 TCGA-2W-A8YY-01 19 19162915 19162915 T C ARMC6 Missense_Mutation p.I255T 0.30 deleterious(0) possibly_damaging(0.694) TCGA-2W-A8YY-01 19 19166667 19166667 T C ARMC6 Missense_Mutation p.I408T 0.35 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 19 19221668 19221668 C T SLC25A42 Missense_Mutation p.R314W 0.30 deleterious(0) possibly_damaging(0.719) TCGA-2W-A8YY-01 19 19230873 19230873 C T TMEM161A Missense_Mutation p.G436R 0.34 tolerated(0.35) probably_damaging(0.952) TCGA-2W-A8YY-01 19 19245618 19245618 C T TMEM161A Missense_Mutation p.A28T 0.13 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 19 19302892 19302892 T C MEF2BNB Missense_Mutation p.K12R 0.34 tolerated(0.35) benign(0.022) TCGA-2W-A8YY-01 19 19313296 19313296 C T NR2C2AP Missense_Mutation p.R73H 0.28 tolerated(0.06) benign(0.021) TCGA-2W-A8YY-01 19 19359613 19359613 T C NCAN Missense_Mutation p.F1248L 0.33 tolerated(0.13) probably_damaging(0.992) TCGA-2W-A8YY-01 19 19360740 19360740 C T NCAN 3'UTR 0.50 TCGA-2W-A8YY-01 19 19369385 19369385 C T HAPLN4 Missense_Mutation p.R255H 0.10 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 19 19371704 19371704 C T HAPLN4 Silent p.T134T 0.11 TCGA-2W-A8YY-01 19 19381121 19381121 C T TM6SF2 Intron 0.42 TCGA-2W-A8YY-01 19 19576298 19576298 G A GATAD2A Silent p.V48V 0.44 TCGA-2W-A8YY-01 19 19616783 19616783 T - GATAD2A 3'UTR 0.33 TCGA-2W-A8YY-01 19 19638931 19638931 C T NDUFA13 Missense_Mutation p.T144M 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.73) TCGA-2W-A8YY-01 19 19640231 19640231 G T NDUFA13 3'Flank 0.30 TCGA-2W-A8YY-01 19 19651928 19651928 G A CILP2 Nonsense_Mutation p.W155* 0.40 TCGA-2W-A8YY-01 19 19680364 19680364 G A PBX4 Missense_Mutation p.A221V 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 19 19734777 19734777 G A LPAR2 3'UTR 0.33 TCGA-2W-A8YY-01 19 19740742 19740742 G A GMIP 3'UTR 0.29 TCGA-2W-A8YY-01 19 19740975 19740975 G A GMIP Missense_Mutation p.P904S 0.17 tolerated(0.2) benign(0.003) TCGA-2W-A8YY-01 19 19744938 19744938 G A GMIP Missense_Mutation p.P716S 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 19751150 19751150 G A GMIP Silent p.S128S 0.17 TCGA-2W-A8YY-01 19 19756331 19756331 A G ATP13A1 Missense_Mutation p.V1172A 0.37 tolerated(0.63) benign(0.013) TCGA-2W-A8YY-01 19 19760397 19760397 C T ATP13A1 Missense_Mutation p.A871T 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 19766913 19766913 G A ATP13A1 Missense_Mutation p.T388I 0.19 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 19767842 19767842 C T ATP13A1 Silent p.S289S 0.33 TCGA-2W-A8YY-01 19 1979005 1979005 G A CSNK1G2 Missense_Mutation p.E199K 0.31 tolerated(0.42) probably_damaging(0.995) TCGA-2W-A8YY-01 19 19790449 19790449 A C ZNF101 Missense_Mutation p.K217N 0.40 deleterious(0.02) benign(0.052) TCGA-2W-A8YY-01 19 19790728 19790728 C T ZNF101 Silent p.Y310Y 0.28 TCGA-2W-A8YY-01 19 19822809 19822809 G A ZNF14 Silent p.T427T 0.41 TCGA-2W-A8YY-01 19 19823586 19823586 G T ZNF14 Silent p.P168P 0.08 TCGA-2W-A8YY-01 19 19905663 19905663 C T ZNF506 Missense_Mutation p.E345K 0.12 deleterious(0.05) benign(0.068) TCGA-2W-A8YY-01 19 19990898 19990898 G T ZNF253 Nonsense_Mutation p.E57* 0.36 TCGA-2W-A8YY-01 19 20044762 20044762 G A ZNF93 Missense_Mutation p.R333K 0.55 tolerated(0.26) benign(0.026) TCGA-2W-A8YY-01 19 20235921 20235921 G A CTC-260E6.2 RNA 0.33 TCGA-2W-A8YY-01 19 2038172 2038172 G A MKNK2 3'UTR 0.49 TCGA-2W-A8YY-01 19 2078261 2078261 C T MOB3A Missense_Mutation p.R100H 0.41 tolerated(0.74) probably_damaging(0.99) TCGA-2W-A8YY-01 19 20959174 20959174 G A ZNF66 5'Flank 0.22 TCGA-2W-A8YY-01 19 20975391 20975391 G A ZNF66 Missense_Mutation p.R26Q 0.28 tolerated(1) possibly_damaging(0.477) TCGA-2W-A8YY-01 19 2098292 2098292 G A IZUMO4 Silent p.S160S 0.43 TCGA-2W-A8YY-01 19 2120886 2120886 C T AP3D1 Missense_Mutation p.A486T 0.28 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 19 2123367 2123367 G A AP3D1 Silent p.S315S 0.45 TCGA-2W-A8YY-01 19 21240031 21240031 C T ZNF430 Missense_Mutation p.T306I 0.26 tolerated(0.15) benign(0.045) TCGA-2W-A8YY-01 19 21300065 21300065 C T ZNF714 Missense_Mutation p.P199S 0.52 tolerated(0.06) probably_damaging(0.995) TCGA-2W-A8YY-01 19 21300255 21300255 G A ZNF714 Missense_Mutation p.G262D 0.36 deleterious(0.05) probably_damaging(0.998) TCGA-2W-A8YY-01 19 21365965 21365965 C T ZNF431 Missense_Mutation p.P287S 0.37 deleterious(0.04) probably_damaging(0.965) TCGA-2W-A8YY-01 19 21477343 21477343 C T ZNF708 Missense_Mutation p.C142Y 0.32 deleterious(0.04) benign(0.113) TCGA-2W-A8YY-01 19 21561402 21561402 A C ZNF738 3'UTR 0.39 TCGA-2W-A8YY-01 19 21719655 21719655 G A ZNF429 Missense_Mutation p.S267N 0.39 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 19 21720181 21720181 A G ZNF429 Silent p.R442R 0.53 TCGA-2W-A8YY-01 19 2189776 2189776 C T DOT1L Silent p.I82I 0.34 TCGA-2W-A8YY-01 19 2207577 2207577 C T DOT1L Silent p.I287I 0.29 TCGA-2W-A8YY-01 19 2213877 2213877 C T DOT1L Silent p.D563D 0.13 TCGA-2W-A8YY-01 19 2214377 2214377 C A DOT1L Intron 0.43 TCGA-2W-A8YY-01 19 22156707 22156707 C A ZNF208 Missense_Mutation p.A377S 0.39 tolerated(0.15) probably_damaging(0.994) TCGA-2W-A8YY-01 19 2216391 2216391 C A DOT1L Missense_Mutation p.L679M 0.11 tolerated_low_confidence(0.17) probably_damaging(0.994) TCGA-2W-A8YY-01 19 2216456 2216456 G A DOT1L Silent p.S700S 0.33 TCGA-2W-A8YY-01 19 22271326 22271326 A C ZNF257 Missense_Mutation p.K258N 0.35 deleterious(0.01) possibly_damaging(0.547) TCGA-2W-A8YY-01 19 22271355 22271355 G A ZNF257 Missense_Mutation p.R268Q 0.30 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 19 2229970 2229970 A G DOT1L 3'UTR 0.39 TCGA-2W-A8YY-01 19 22363986 22363986 A C ZNF676 Missense_Mutation p.F178C 0.10 deleterious(0) possibly_damaging(0.842) TCGA-2W-A8YY-01 19 22364195 22364195 T C ZNF676 Silent p.T108T 0.11 TCGA-2W-A8YY-01 19 2249571 2249571 G A AMH Silent p.E80E 0.37 TCGA-2W-A8YY-01 19 22574381 22574381 G A ZNF98 Silent p.N552N 0.32 TCGA-2W-A8YY-01 19 23329018 23329018 C T ZNF730 Missense_Mutation p.T391I 0.47 deleterious(0.01) benign(0.155) TCGA-2W-A8YY-01 19 23329343 23329343 G T ZNF730 Missense_Mutation p.K499N 0.23 deleterious(0.03) benign(0.022) TCGA-2W-A8YY-01 19 23541637 23541637 C T ZNF91 3'UTR 0.33 TCGA-2W-A8YY-01 19 23545162 23545162 C A ZNF91 Nonsense_Mutation p.E207* 0.37 TCGA-2W-A8YY-01 19 23545336 23545336 C G ZNF91 Missense_Mutation p.A149P 0.24 tolerated(0.1) possibly_damaging(0.709) TCGA-2W-A8YY-01 19 23837031 23837031 C T ZNF675 Missense_Mutation p.R235K 0.50 tolerated(1) benign(0) TCGA-2W-A8YY-01 19 23837079 23837079 T G ZNF675 Missense_Mutation p.K219T 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 19 23837144 23837144 C T ZNF675 Silent p.V197V 0.28 TCGA-2W-A8YY-01 19 23928110 23928110 A C ZNF681 Missense_Mutation p.F81C 0.24 deleterious(0.03) possibly_damaging(0.869) TCGA-2W-A8YY-01 19 24010841 24010841 A G RPSAP58 Missense_Mutation p.D293G 0.25 deleterious(0.01) benign(0) TCGA-2W-A8YY-01 19 2413713 2413713 C - TMPRSS9 Frame_Shift_Del p.L391Wfs*16 0.09 TCGA-2W-A8YY-01 19 2422093 2422093 C T TMPRSS9 Missense_Mutation p.P765L 0.32 tolerated(0.63) benign(0.001) TCGA-2W-A8YY-01 19 2425209 2425209 G A TMPRSS9 Missense_Mutation p.R942Q 0.44 tolerated(0.7) possibly_damaging(0.817) TCGA-2W-A8YY-01 19 24310289 24310289 G A ZNF254 Missense_Mutation p.G496D 0.16 tolerated(0.06) benign(0.249) TCGA-2W-A8YY-01 19 2512211 2512211 G A GNG7 3'UTR 0.41 TCGA-2W-A8YY-01 19 2512223 2512223 A T GNG7 3'UTR 0.34 TCGA-2W-A8YY-01 19 2716756 2716756 C T DIRAS1 3'UTR 0.43 TCGA-2W-A8YY-01 19 2717713 2717713 G A DIRAS1 Missense_Mutation p.T31M 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 19 2737307 2737307 G A SLC39A3 5'UTR 0.27 TCGA-2W-A8YY-01 19 2790602 2790602 C T THOP1 Missense_Mutation p.A67V 0.50 tolerated(0.24) benign(0.006) TCGA-2W-A8YY-01 19 2794781 2794781 C T THOP1 Silent p.D83D 0.35 TCGA-2W-A8YY-01 19 2796108 2796108 C T THOP1 Silent p.P136P 0.21 TCGA-2W-A8YY-01 19 2933568 2933568 C T ZNF77 Silent p.P519P 0.21 TCGA-2W-A8YY-01 19 2933704 2933704 C T ZNF77 Missense_Mutation p.S474N 0.43 tolerated(0.25) benign(0.406) TCGA-2W-A8YY-01 19 2934638 2934638 G T ZNF77 Missense_Mutation p.P163T 0.15 deleterious(0.04) benign(0.11) TCGA-2W-A8YY-01 19 2934713 2934713 C T ZNF77 Missense_Mutation p.E138K 0.27 tolerated(0.27) benign(0.01) TCGA-2W-A8YY-01 19 29698872 29698872 G A UQCRFS1 Silent p.F136F 0.48 TCGA-2W-A8YY-01 19 29698883 29698883 C T UQCRFS1 Missense_Mutation p.V133I 0.28 tolerated(0.09) benign(0.049) TCGA-2W-A8YY-01 19 3006492 3006492 C T TLE2 Missense_Mutation p.G476S 0.35 deleterious(0.02) probably_damaging(0.95) TCGA-2W-A8YY-01 19 3015680 3015680 C T TLE2 Missense_Mutation p.A217T 0.48 tolerated(0.47) benign(0.001) TCGA-2W-A8YY-01 19 30165042 30165042 G A PLEKHF1 Missense_Mutation p.R99H 0.38 deleterious(0.04) probably_damaging(0.983) TCGA-2W-A8YY-01 19 30193703 30193703 G A C19orf12 Silent p.S125S 0.42 TCGA-2W-A8YY-01 19 3027857 3027857 C T TLE2 Silent p.S67S 0.33 TCGA-2W-A8YY-01 19 30312662 30312662 T C CCNE1 Missense_Mutation p.Y215H 0.51 deleterious(0.02) benign(0.153) TCGA-2W-A8YY-01 19 30500173 30500173 T C URI1 Silent p.D316D 0.11 TCGA-2W-A8YY-01 19 30503191 30503191 G A URI1 Splice_Site p.X393_splice 0.30 TCGA-2W-A8YY-01 19 307413 307413 G A MIER2 Missense_Mutation p.P441L 0.31 deleterious(0.01) benign(0.027) TCGA-2W-A8YY-01 19 30936132 30936132 G A ZNF536 Missense_Mutation p.A555T 0.52 deleterious(0.04) benign(0.01) TCGA-2W-A8YY-01 19 30936576 30936576 G A ZNF536 Missense_Mutation p.G703S 0.50 deleterious(0.01) possibly_damaging(0.719) TCGA-2W-A8YY-01 19 31038892 31038892 C T ZNF536 Missense_Mutation p.T789M 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 3157747 3157747 G A GNA15 Missense_Mutation p.A256T 0.40 tolerated(0.29) benign(0.185) TCGA-2W-A8YY-01 19 31766111 31766111 G A TSHZ3 3'UTR 0.44 TCGA-2W-A8YY-01 19 31766492 31766492 G A TSHZ3 3'UTR 0.42 TCGA-2W-A8YY-01 19 31766506 31766506 C T TSHZ3 3'UTR 0.30 TCGA-2W-A8YY-01 19 31766577 31766577 T C TSHZ3 3'UTR 0.40 TCGA-2W-A8YY-01 19 31767106 31767106 G A TSHZ3 3'UTR 0.37 TCGA-2W-A8YY-01 19 31770427 31770427 C T TSHZ3 Missense_Mutation p.G91D 0.54 tolerated(0.44) benign(0.022) TCGA-2W-A8YY-01 19 3282428 3282428 T G CELF5 Missense_Mutation p.V324G 0.48 tolerated(0.11) benign(0) TCGA-2W-A8YY-01 19 32877494 32877494 A G ZNF507 3'UTR 0.38 TCGA-2W-A8YY-01 19 32930716 32930716 T C DPY19L3 Missense_Mutation p.F252S 0.45 deleterious(0.02) benign(0.261) TCGA-2W-A8YY-01 19 32974520 32974520 C T DPY19L3 3'UTR 0.57 TCGA-2W-A8YY-01 19 32974812 32974812 G A DPY19L3 3'UTR 0.50 TCGA-2W-A8YY-01 19 33222743 33222743 C T TDRD12 Missense_Mutation p.T46M 0.33 tolerated(0.4) benign(0.006) TCGA-2W-A8YY-01 19 33293911 33293911 C T TDRD12 Silent p.V805V 0.24 TCGA-2W-A8YY-01 19 33353095 33353095 G A SLC7A9 Silent p.F211F 0.26 TCGA-2W-A8YY-01 19 33353113 33353113 C A SLC7A9 Missense_Mutation p.K205N 0.37 deleterious(0.03) benign(0.102) TCGA-2W-A8YY-01 19 33355593 33355593 C T SLC7A9 Silent p.T59T 0.38 TCGA-2W-A8YY-01 19 33481510 33481510 C T RHPN2 Silent p.T570T 0.43 TCGA-2W-A8YY-01 19 33609929 33609929 A G GPATCH1 Silent p.A809A 0.46 TCGA-2W-A8YY-01 19 33666433 33666433 G A WDR88 Silent p.S458S 0.27 TCGA-2W-A8YY-01 19 33695549 33695549 G A LRP3 Missense_Mutation p.R89H 0.41 tolerated(0.14) benign(0.028) TCGA-2W-A8YY-01 19 33696659 33696659 G A LRP3 Missense_Mutation p.R328H 0.50 tolerated(0.63) benign(0.01) TCGA-2W-A8YY-01 19 33697063 33697063 G A LRP3 Missense_Mutation p.G463S 0.43 tolerated(0.05) possibly_damaging(0.761) TCGA-2W-A8YY-01 19 3381723 3381723 C T NFIC Missense_Mutation p.P15L 0.28 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 33870674 33870674 G A CEBPG 3'UTR 0.41 TCGA-2W-A8YY-01 19 33870977 33870977 G T CEBPG 3'UTR 0.47 TCGA-2W-A8YY-01 19 33871139 33871139 C T CEBPG 3'UTR 0.21 TCGA-2W-A8YY-01 19 33873075 33873075 G A CEBPG 3'UTR 0.41 TCGA-2W-A8YY-01 19 33882297 33882297 G A PEPD Silent p.D352D 0.31 TCGA-2W-A8YY-01 19 34263499 34263499 G A CHST8 Missense_Mutation p.R269H 0.08 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 3474610 3474610 A C C19orf77 3'UTR 0.60 TCGA-2W-A8YY-01 19 34810998 34810998 C T KIAA0355 Missense_Mutation p.R228W 0.27 deleterious(0.01) benign(0.335) TCGA-2W-A8YY-01 19 34843674 34843674 C T KIAA0355 Silent p.N1009N 0.36 TCGA-2W-A8YY-01 19 34890197 34890197 C T GPI Missense_Mutation p.A463V 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.509) TCGA-2W-A8YY-01 19 3494096 3494096 G A DOHH Missense_Mutation p.A94V 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 3496831 3496831 C T DOHH 5'UTR 0.37 TCGA-2W-A8YY-01 19 34991072 34991072 T C WTIP Silent p.R397R 0.29 TCGA-2W-A8YY-01 19 34991891 34991891 C T WTIP 3'UTR 0.37 TCGA-2W-A8YY-01 19 3522984 3522984 C T FZR1 5'Flank 0.29 TCGA-2W-A8YY-01 19 35231813 35231813 T A ZNF181 Missense_Mutation p.I176N 0.40 tolerated(0.09) benign(0.001) TCGA-2W-A8YY-01 19 35232538 35232538 T C ZNF181 Missense_Mutation p.S418P 0.13 tolerated(0.07) probably_damaging(0.958) TCGA-2W-A8YY-01 19 35233154 35233154 G T ZNF181 3'Flank 0.60 TCGA-2W-A8YY-01 19 35250427 35250427 C T ZNF599 Missense_Mutation p.E427K 0.32 deleterious(0.02) benign(0.381) TCGA-2W-A8YY-01 19 35251194 35251194 C T ZNF599 Missense_Mutation p.R171Q 0.40 tolerated(1) benign(0) TCGA-2W-A8YY-01 19 35251436 35251436 C T ZNF599 Silent p.E90E 0.34 TCGA-2W-A8YY-01 19 3531814 3531814 G A FZR1 Missense_Mutation p.G275R 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 3539242 3539242 C T C19orf71 Missense_Mutation p.P23S 0.36 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 19 3543921 3543921 C T C19orf71 Silent p.T181T 0.44 TCGA-2W-A8YY-01 19 3543996 3543996 C T C19orf71 Silent p.P206P 0.34 TCGA-2W-A8YY-01 19 35449298 35449298 A G ZNF792 Silent p.F487F 0.30 TCGA-2W-A8YY-01 19 35449500 35449500 C T ZNF792 Missense_Mutation p.R420K 0.48 tolerated(0.14) benign(0.011) TCGA-2W-A8YY-01 19 35486992 35486992 G A GRAMD1A 5'Flank 0.43 TCGA-2W-A8YY-01 19 35487178 35487178 G T GRAMD1A 5'Flank 0.27 TCGA-2W-A8YY-01 19 35523557 35523557 G A SCN1B Missense_Mutation p.E56K 0.31 tolerated(0.07) probably_damaging(0.92) TCGA-2W-A8YY-01 19 35524562 35524562 G A SCN1B Missense_Mutation p.V123I 0.28 tolerated(0.16) benign(0.427) TCGA-2W-A8YY-01 19 35530545 35530545 A G HPN 5'Flank 0.42 TCGA-2W-A8YY-01 19 35532769 35532769 A G HPN 5'UTR 0.33 TCGA-2W-A8YY-01 19 35550622 35550622 C T HPN Missense_Mutation p.T69M 0.30 deleterious(0.04) possibly_damaging(0.667) TCGA-2W-A8YY-01 19 35550894 35550894 C T HPN Missense_Mutation p.S136F 0.49 tolerated(0.68) benign(0.002) TCGA-2W-A8YY-01 19 35556544 35556544 T G HPN Missense_Mutation p.F337V 0.11 deleterious(0.01) possibly_damaging(0.784) TCGA-2W-A8YY-01 19 35557392 35557392 T C HPN 3'UTR 0.55 TCGA-2W-A8YY-01 19 35614884 35614884 G A FXYD3 3'Flank 0.34 TCGA-2W-A8YY-01 19 35649293 35649293 G A FXYD5 Nonsense_Mutation p.W63* 0.35 TCGA-2W-A8YY-01 19 35716084 35716084 G - FAM187B Frame_Shift_Del p.L252* 0.10 TCGA-2W-A8YY-01 19 35752846 35752846 C T LSR Missense_Mutation p.A246V 0.31 tolerated(0.11) benign(0.162) TCGA-2W-A8YY-01 19 3576900 3576900 G A HMG20B Silent p.A201A 0.49 TCGA-2W-A8YY-01 19 35770029 35770029 C T USF2 Intron 0.26 TCGA-2W-A8YY-01 19 35770352 35770352 G A USF2 3'UTR 0.36 TCGA-2W-A8YY-01 19 35775852 35775852 G T HAMP Missense_Mutation p.Q54H 0.40 tolerated(0.19) probably_damaging(0.961) TCGA-2W-A8YY-01 19 35801015 35801015 G A MAG Silent p.A490A 0.31 TCGA-2W-A8YY-01 19 35804247 35804247 C A MAG Missense_Mutation p.P591T 0.36 tolerated(0.54) benign(0.002) TCGA-2W-A8YY-01 19 35826964 35826964 G A CD22 Silent p.Q146Q 0.44 TCGA-2W-A8YY-01 19 35849932 35849932 C T FFAR3 Missense_Mutation p.P47L 0.24 tolerated(0.07) possibly_damaging(0.595) TCGA-2W-A8YY-01 19 35851386 35851386 G A FFAR3 3'UTR 0.56 TCGA-2W-A8YY-01 19 3586493 3586493 A G GIPC3 Missense_Mutation p.I76V 0.08 tolerated(0.1) probably_damaging(0.965) TCGA-2W-A8YY-01 19 35899440 35899440 T C AC002511.1 RNA 0.33 TCGA-2W-A8YY-01 19 35899660 35899660 T G AC002511.1 RNA 0.27 TCGA-2W-A8YY-01 19 3592893 3592893 G T GIPC3 3'UTR 0.54 TCGA-2W-A8YY-01 19 36003990 36003990 C T DMKN Missense_Mutation p.G130S 0.55 tolerated(1) benign(0.425) TCGA-2W-A8YY-01 19 36042471 36042471 C T ATP4A Silent p.Q921Q 0.08 TCGA-2W-A8YY-01 19 36106201 36106201 C T HAUS5 Missense_Mutation p.A133V 0.45 deleterious(0.03) possibly_damaging(0.731) TCGA-2W-A8YY-01 19 36111099 36111099 C T HAUS5 Silent p.A507A 0.40 TCGA-2W-A8YY-01 19 36113601 36113601 C T HAUS5 Nonsense_Mutation p.R584* 0.32 TCGA-2W-A8YY-01 19 3618919 3618919 G A CACTIN Silent p.D372D 0.53 TCGA-2W-A8YY-01 19 3620243 3620243 G A CACTIN Missense_Mutation p.R256W 0.31 deleterious(0) probably_damaging(0.936) TCGA-2W-A8YY-01 19 36206346 36206346 G A ZBTB32 Missense_Mutation p.G273D 0.39 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-2W-A8YY-01 19 36216441 36216441 G A KMT2B Missense_Mutation p.R1235Q 0.29 benign(0.441) TCGA-2W-A8YY-01 19 36221447 36221447 C T KMT2B Missense_Mutation p.R1736C 0.26 probably_damaging(0.993) TCGA-2W-A8YY-01 19 36223854 36223854 C T KMT2B Missense_Mutation p.S2135L 0.29 benign(0) TCGA-2W-A8YY-01 19 36223863 36223863 C T KMT2B Missense_Mutation p.P2138L 0.27 benign(0.184) TCGA-2W-A8YY-01 19 36224664 36224664 G T KMT2B Silent p.G2350G 0.44 TCGA-2W-A8YY-01 19 36228767 36228767 A G KMT2B Missense_Mutation p.T2556A 0.26 benign(0.27) TCGA-2W-A8YY-01 19 36229010 36229010 C T KMT2B Missense_Mutation p.A2597V 0.13 possibly_damaging(0.876) TCGA-2W-A8YY-01 19 36230718 36230718 C T IGFLR1 Missense_Mutation p.G205E 0.18 tolerated(0.87) benign(0.002) TCGA-2W-A8YY-01 19 36231299 36231299 G A IGFLR1 Silent p.T108T 0.45 TCGA-2W-A8YY-01 19 36237618 36237618 G A PSENEN Missense_Mutation p.R59H 0.39 tolerated(0.54) benign(0.022) TCGA-2W-A8YY-01 19 3623936 3623936 G A CACTIN Missense_Mutation p.A131V 0.28 deleterious(0.02) unknown(0) TCGA-2W-A8YY-01 19 36243688 36243688 A G LIN37 Intron 0.22 TCGA-2W-A8YY-01 19 36257779 36257779 C T C19orf55 Missense_Mutation p.R294W 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 36259061 36259061 C T C19orf55 Nonsense_Mutation p.R409* 0.51 TCGA-2W-A8YY-01 19 36268768 36268768 C T ARHGAP33 Silent p.C49C 0.24 TCGA-2W-A8YY-01 19 36278820 36278820 C T ARHGAP33 Missense_Mutation p.S957F 0.55 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-2W-A8YY-01 19 3630508 3630508 G A PIP5K1C 3'UTR 0.32 TCGA-2W-A8YY-01 19 36339289 36339289 C T NPHS1 Missense_Mutation p.G394D 0.37 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 19 36339659 36339659 G A NPHS1 Silent p.S350S 0.40 TCGA-2W-A8YY-01 19 36351279 36351279 G T KIRREL2 Missense_Mutation p.A252S 0.24 deleterious(0.05) probably_damaging(0.985) TCGA-2W-A8YY-01 19 36362202 36362202 G A APLP1 Missense_Mutation p.R163H 0.30 deleterious(0.01) benign(0.013) TCGA-2W-A8YY-01 19 36379231 36379231 G A NFKBID 3'UTR 0.39 TCGA-2W-A8YY-01 19 36389658 36389658 C T NFKBID 5'UTR 0.45 TCGA-2W-A8YY-01 19 36398647 36398647 C T TYROBP Missense_Mutation p.A27T 0.49 deleterious(0.02) benign(0.167) TCGA-2W-A8YY-01 19 36501882 36501882 C T ALKBH6 Missense_Mutation p.D112N 0.26 tolerated(0.09) probably_damaging(0.945) TCGA-2W-A8YY-01 19 36507740 36507740 G A CLIP3 Intron 0.33 TCGA-2W-A8YY-01 19 36530896 36530896 G T THAP8 Missense_Mutation p.L76M 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 3653428 3653428 G A PIP5K1C Missense_Mutation p.R261W 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 36593650 36593650 G A WDR62 Missense_Mutation p.A1078T 0.45 tolerated(0.46) benign(0.001) TCGA-2W-A8YY-01 19 3660998 3660998 C T PIP5K1C Missense_Mutation p.R145Q 0.44 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 19 36616654 36616654 G A TBCB Silent p.P235P 0.08 TCGA-2W-A8YY-01 19 36632014 36632014 G A CAPNS1 Missense_Mutation p.S34N 0.30 tolerated_low_confidence(0.08) benign(0.213) TCGA-2W-A8YY-01 19 36634019 36634019 G A CAPNS1 Missense_Mutation p.A149T 0.15 deleterious(0.03) probably_damaging(0.954) TCGA-2W-A8YY-01 19 36640712 36640712 C T CAPNS1 Intron 0.26 TCGA-2W-A8YY-01 19 36674000 36674000 G A ZNF565 Missense_Mutation p.R290C 0.29 tolerated(0.27) benign(0.243) TCGA-2W-A8YY-01 19 36674031 36674031 G A ZNF565 Silent p.Y279Y 0.40 TCGA-2W-A8YY-01 19 37038616 37038616 A C ZNF529 Missense_Mutation p.F282V 0.48 deleterious(0) benign(0.116) TCGA-2W-A8YY-01 19 37098481 37098481 T C ZNF382 5'UTR 0.38 TCGA-2W-A8YY-01 19 37117276 37117276 G T ZNF382 Missense_Mutation p.E159D 0.22 tolerated(0.17) benign(0.002) TCGA-2W-A8YY-01 19 37239385 37239385 G A ZNF850 Missense_Mutation p.R853C 0.33 tolerated(0.19) benign(0.136) TCGA-2W-A8YY-01 19 37239572 37239572 A G ZNF850 Silent p.C790C 0.34 TCGA-2W-A8YY-01 19 37240308 37240308 C T ZNF850 Missense_Mutation p.R545H 0.42 tolerated(0.62) probably_damaging(0.939) TCGA-2W-A8YY-01 19 37241162 37241162 C T ZNF850 Silent p.K260K 0.49 TCGA-2W-A8YY-01 19 37241537 37241537 C A ZNF850 Missense_Mutation p.E135D 0.29 tolerated(0.25) benign(0.096) TCGA-2W-A8YY-01 19 3730582 3730582 G A TJP3 Missense_Mutation p.S173N 0.47 deleterious(0.03) possibly_damaging(0.57) TCGA-2W-A8YY-01 19 37369566 37369566 A C ZNF345 3'UTR 0.27 TCGA-2W-A8YY-01 19 37369625 37369625 C T ZNF345 3'UTR 0.32 TCGA-2W-A8YY-01 19 3739077 3739077 C T TJP3 Missense_Mutation p.R535C 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 3746849 3746849 G T TJP3 Missense_Mutation p.R775L 0.07 deleterious(0.01) probably_damaging(0.954) TCGA-2W-A8YY-01 19 37482182 37482182 C T ZNF568 Silent p.Y106Y 0.53 TCGA-2W-A8YY-01 19 3759920 3759920 G T APBA3 Missense_Mutation p.L115I 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-2W-A8YY-01 19 37643723 37643723 C T ZNF585A Missense_Mutation p.G305R 0.28 deleterious(0.02) probably_damaging(0.972) TCGA-2W-A8YY-01 19 37676674 37676674 G A ZNF585B Missense_Mutation p.R589C 0.22 tolerated(0.12) probably_damaging(0.928) TCGA-2W-A8YY-01 19 3778380 3778380 C T MATK Missense_Mutation p.R443H 0.09 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 19 3785202 3785202 G A MATK Intron 0.33 TCGA-2W-A8YY-01 19 37880847 37880847 C T ZNF527 3'UTR 0.23 TCGA-2W-A8YY-01 19 37880901 37880901 G A ZNF527 3'UTR 0.55 TCGA-2W-A8YY-01 19 37903984 37903984 C T ZNF569 Missense_Mutation p.E526K 0.44 tolerated(0.2) benign(0.002) TCGA-2W-A8YY-01 19 37904983 37904983 T G ZNF569 Missense_Mutation p.K193Q 0.39 tolerated(0.08) benign(0.021) TCGA-2W-A8YY-01 19 37935810 37935810 T C ZNF569 Missense_Mutation p.Q5R 0.39 tolerated(0.07) benign(0) TCGA-2W-A8YY-01 19 37958673 37958673 C T ZNF569 5'Flank 0.57 TCGA-2W-A8YY-01 19 38028122 38028122 C T ZNF793 Missense_Mutation p.R188W 0.33 tolerated(0.4) benign(0) TCGA-2W-A8YY-01 19 38040028 38040028 C T ZNF540 5'Flank 0.26 TCGA-2W-A8YY-01 19 38046853 38046853 G T ZNF540 Intron 0.52 TCGA-2W-A8YY-01 19 38055513 38055513 C A ZNF571 Missense_Mutation p.R606M 0.39 deleterious(0) benign(0.068) TCGA-2W-A8YY-01 19 3808891 3808891 C T ZFR2 Missense_Mutation p.A842T 0.23 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 19 38103610 38103610 C T ZNF540 Nonsense_Mutation p.R477* 0.37 TCGA-2W-A8YY-01 19 38103949 38103949 C T ZNF540 Missense_Mutation p.R590C 0.36 tolerated(0.2) possibly_damaging(0.847) TCGA-2W-A8YY-01 19 38159580 38159580 G A ZNF781 3'UTR 0.47 TCGA-2W-A8YY-01 19 38189626 38189626 C A ZNF607 Missense_Mutation p.R469I 0.22 deleterious(0.03) possibly_damaging(0.829) TCGA-2W-A8YY-01 19 38190233 38190233 C T ZNF607 Missense_Mutation p.G267S 0.41 tolerated(1) benign(0.012) TCGA-2W-A8YY-01 19 38230267 38230267 C T ZNF573 Missense_Mutation p.R375Q 0.41 tolerated(0.88) benign(0.005) TCGA-2W-A8YY-01 19 38315295 38315295 T C AC016582.2 RNA 0.47 TCGA-2W-A8YY-01 19 38315817 38315817 C A AC016582.2 RNA 0.25 TCGA-2W-A8YY-01 19 38376635 38376635 A G WDR87 Missense_Mutation p.V2520A 0.38 unknown(0) TCGA-2W-A8YY-01 19 38385727 38385727 G A WDR87 Missense_Mutation p.P167S 0.33 possibly_damaging(0.869) TCGA-2W-A8YY-01 19 38386875 38386875 C T WDR87 Intron 0.25 TCGA-2W-A8YY-01 19 38572322 38572322 C A SIPA1L3 Missense_Mutation p.F39L 0.28 tolerated(0.07) possibly_damaging(0.542) TCGA-2W-A8YY-01 19 38692625 38692625 C T SIPA1L3 Missense_Mutation p.T1703I 0.43 tolerated(0.27) possibly_damaging(0.864) TCGA-2W-A8YY-01 19 38698455 38698455 C T SIPA1L3 3'UTR 0.12 TCGA-2W-A8YY-01 19 38698621 38698621 G - SIPA1L3 3'UTR 0.35 TCGA-2W-A8YY-01 19 38702378 38702379 - A DPF1 3'UTR 0.34 TCGA-2W-A8YY-01 19 38706885 38706885 C T DPF1 Missense_Mutation p.D292N 0.31 tolerated(0.15) probably_damaging(0.918) TCGA-2W-A8YY-01 19 38708509 38708509 C T DPF1 Missense_Mutation p.G202D 0.49 deleterious(0.03) probably_damaging(0.958) TCGA-2W-A8YY-01 19 38741989 38741989 A G PPP1R14A Missense_Mutation p.L138P 0.19 tolerated_low_confidence(0.31) benign(0.266) TCGA-2W-A8YY-01 19 38798066 38798066 A G YIF1B Splice_Site p.X263_splice 0.30 TCGA-2W-A8YY-01 19 38870006 38870006 G T PSMD8 Missense_Mutation p.Q221H 0.49 tolerated(0.09) possibly_damaging(0.519) TCGA-2W-A8YY-01 19 38876256 38876256 C T GGN Missense_Mutation p.R549H 0.44 deleterious_low_confidence(0.04) benign(0.284) TCGA-2W-A8YY-01 19 38877869 38877869 G A GGN Silent p.G11G 0.32 TCGA-2W-A8YY-01 19 38897549 38897549 G T FAM98C Splice_Site p.X251_splice 0.45 TCGA-2W-A8YY-01 19 38911742 38911742 G A RASGRP4 Silent p.L103L 0.24 TCGA-2W-A8YY-01 19 38966058 38966058 G A RYR1 Missense_Mutation p.D1421N 0.34 benign(0.366) TCGA-2W-A8YY-01 19 38976338 38976338 G A RYR1 Silent p.A1681A 0.48 TCGA-2W-A8YY-01 19 38981327 38981327 C T RYR1 Nonsense_Mutation p.R2028* 0.24 TCGA-2W-A8YY-01 19 38985135 38985135 C T RYR1 Missense_Mutation p.R2140W 0.24 benign(0.317) TCGA-2W-A8YY-01 19 38991314 38991314 G T RYR1 Missense_Mutation p.E2464D 0.42 benign(0) TCGA-2W-A8YY-01 19 39071056 39071056 C T RYR1 Missense_Mutation p.T4853I 0.58 possibly_damaging(0.472) TCGA-2W-A8YY-01 19 39191708 39191708 C T ACTN4 Missense_Mutation p.A115V 0.42 deleterious(0.05) probably_damaging(0.989) TCGA-2W-A8YY-01 19 39214269 39214269 C T ACTN4 Silent p.Y486Y 0.42 TCGA-2W-A8YY-01 19 39219976 39219976 C T ACTN4 Silent p.I880I 0.28 TCGA-2W-A8YY-01 19 39226164 39226164 C A CAPN12 Missense_Mutation p.S535I 0.48 deleterious(0.04) probably_damaging(0.996) TCGA-2W-A8YY-01 19 39228164 39228164 T G CAPN12 Missense_Mutation p.Q360H 0.44 tolerated(0.11) benign(0.016) TCGA-2W-A8YY-01 19 39292738 39292738 C T LGALS4 Missense_Mutation p.R240H 0.46 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 19 39303600 39303600 G A LGALS4 5'UTR 0.35 TCGA-2W-A8YY-01 19 39306531 39306531 C T ECH1 Missense_Mutation p.R283H 0.38 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 19 39390317 39390317 A C SIRT2 5'UTR 0.32 TCGA-2W-A8YY-01 19 39395911 39395911 G A NFKBIB Missense_Mutation p.G119R 0.52 tolerated(0.09) benign(0.08) TCGA-2W-A8YY-01 19 39410774 39410774 G A SARS2 Missense_Mutation p.P204L 0.33 tolerated(0.23) possibly_damaging(0.82) TCGA-2W-A8YY-01 19 39423118 39423118 G A MRPS12 Silent p.T65T 0.39 TCGA-2W-A8YY-01 19 3959351 3959351 G A DAPK3 Silent p.S371S 0.18 TCGA-2W-A8YY-01 19 3961086 3961086 C T DAPK3 Missense_Mutation p.D235N 0.36 tolerated(0.07) benign(0.014) TCGA-2W-A8YY-01 19 39660352 39660352 C T PAK4 Silent p.L53L 0.43 TCGA-2W-A8YY-01 19 39663743 39663743 G A PAK4 Silent p.G130G 0.53 TCGA-2W-A8YY-01 19 39669912 39669912 T C PAK4 3'UTR 0.39 TCGA-2W-A8YY-01 19 39694603 39694603 C T SYCN Missense_Mutation p.G98S 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 39798882 39798882 G A LRFN1 Silent p.R569R 0.31 TCGA-2W-A8YY-01 19 3984321 3984321 C T EEF2 Missense_Mutation p.A11T 0.37 tolerated(0.32) benign(0.002) TCGA-2W-A8YY-01 19 39871236 39871236 C T SAMD4B Silent p.F553F 0.26 TCGA-2W-A8YY-01 19 39874278 39874278 C A SAMD4B 3'UTR 0.28 TCGA-2W-A8YY-01 19 39875264 39875264 C T SAMD4B 3'UTR 0.32 TCGA-2W-A8YY-01 19 39913458 39913458 C T PLEKHG2 Silent p.S588S 0.36 TCGA-2W-A8YY-01 19 39914037 39914037 G A PLEKHG2 Silent p.R781R 0.30 TCGA-2W-A8YY-01 19 39960882 39960882 G A SUPT5H Missense_Mutation p.V500I 0.27 tolerated(0.18) possibly_damaging(0.572) TCGA-2W-A8YY-01 19 39980444 39980444 G A TIMM50 Missense_Mutation p.R452H 0.37 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-2W-A8YY-01 19 39989632 39989632 G A DLL3 Missense_Mutation p.M6I 0.30 tolerated_low_confidence(0.08) benign(0.006) TCGA-2W-A8YY-01 19 40006557 40006557 G A SELV Silent p.G235G 0.54 TCGA-2W-A8YY-01 19 40030313 40030313 G A EID2 Missense_Mutation p.A136V 0.33 deleterious(0.02) possibly_damaging(0.695) TCGA-2W-A8YY-01 19 40318038 40318038 C T DYRK1B Missense_Mutation p.V328M 0.29 tolerated(0.1) probably_damaging(0.991) TCGA-2W-A8YY-01 19 40318948 40318948 G A DYRK1B Missense_Mutation p.L266F 0.33 tolerated(0.15) benign(0.181) TCGA-2W-A8YY-01 19 40325370 40325370 C T FBL Silent p.P293P 0.09 TCGA-2W-A8YY-01 19 40363919 40363919 T C FCGBP Missense_Mutation p.Q4908R 0.21 benign(0.241) TCGA-2W-A8YY-01 19 40366170 40366170 C T FCGBP Silent p.A4688A 0.35 TCGA-2W-A8YY-01 19 40368684 40368684 G A FCGBP Missense_Mutation p.R4222C 0.24 possibly_damaging(0.898) TCGA-2W-A8YY-01 19 40380239 40380239 C T FCGBP Silent p.R3692R 0.22 TCGA-2W-A8YY-01 19 40384020 40384020 C T FCGBP Missense_Mutation p.S3197N 0.17 possibly_damaging(0.517) TCGA-2W-A8YY-01 19 40424150 40424150 C T FCGBP Missense_Mutation p.A685T 0.38 possibly_damaging(0.692) TCGA-2W-A8YY-01 19 4046681 4046681 G A ZBTB7A 3'UTR 0.22 TCGA-2W-A8YY-01 19 4047595 4047595 C T ZBTB7A 3'UTR 0.36 TCGA-2W-A8YY-01 19 4047821 4047821 C T ZBTB7A Missense_Mutation p.G562S 0.26 tolerated_low_confidence(0.71) possibly_damaging(0.862) TCGA-2W-A8YY-01 19 40480650 40480650 C T PSMC4 Silent p.I196I 0.38 TCGA-2W-A8YY-01 19 40521033 40521033 G A ZNF546 Missense_Mutation p.R619Q 0.33 tolerated(0.17) possibly_damaging(0.553) TCGA-2W-A8YY-01 19 40539607 40539607 G A ZNF780B 3'UTR 0.32 TCGA-2W-A8YY-01 19 40542375 40542375 G A ZNF780B Nonsense_Mutation p.R131* 0.34 TCGA-2W-A8YY-01 19 4054531 4054531 C T ZBTB7A Missense_Mutation p.G234R 0.14 tolerated(0.18) benign(0.313) TCGA-2W-A8YY-01 19 4054658 4054658 G A ZBTB7A Silent p.S191S 0.44 TCGA-2W-A8YY-01 19 4054943 4054943 C T ZBTB7A Silent p.T96T 0.33 TCGA-2W-A8YY-01 19 40580649 40580649 C T ZNF780A Missense_Mutation p.R568Q 0.25 tolerated(0.2) benign(0.089) TCGA-2W-A8YY-01 19 40738308 40738308 C T AKT2 3'UTR 0.31 TCGA-2W-A8YY-01 19 40741996 40741996 C T AKT2 Missense_Mutation p.D326N 0.34 deleterious(0.04) possibly_damaging(0.895) TCGA-2W-A8YY-01 19 40828215 40828215 G A C19orf47 Silent p.D281D 0.33 TCGA-2W-A8YY-01 19 40872584 40872584 C T PLD3 Missense_Mutation p.A32V 0.25 deleterious_low_confidence(0.04) benign(0.028) TCGA-2W-A8YY-01 19 40883976 40883976 C T PLD3 Missense_Mutation p.R457W 0.19 deleterious(0) probably_damaging(0.917) TCGA-2W-A8YY-01 19 40887002 40887002 A G HIPK4 Missense_Mutation p.V299A 0.30 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 19 40889978 40889978 C T HIPK4 Silent p.S178S 0.27 TCGA-2W-A8YY-01 19 40900560 40900560 C T PRX Silent p.A1233A 0.30 TCGA-2W-A8YY-01 19 40964133 40964133 G T BLVRB Missense_Mutation p.S88Y 0.43 deleterious(0.03) probably_damaging(0.989) TCGA-2W-A8YY-01 19 40978534 40978534 G A SPTBN4 Silent p.A2A 0.40 TCGA-2W-A8YY-01 19 40998928 40998928 C A SPTBN4 Missense_Mutation p.A185D 0.36 deleterious(0) benign(0) TCGA-2W-A8YY-01 19 41019261 41019261 C T SPTBN4 Silent p.R855R 0.59 TCGA-2W-A8YY-01 19 41040115 41040115 G A SPTBN4 Silent p.E1408E 0.27 TCGA-2W-A8YY-01 19 41086803 41086803 C T SHKBP1 Silent p.L269L 0.36 TCGA-2W-A8YY-01 19 41105158 41105158 C T LTBP4 Nonsense_Mutation p.R68* 0.39 TCGA-2W-A8YY-01 19 41112393 41112393 G A LTBP4 Missense_Mutation p.D385N 0.47 tolerated(0.2) possibly_damaging(0.776) TCGA-2W-A8YY-01 19 41119045 41119045 C T LTBP4 Missense_Mutation p.R859C 0.28 deleterious(0.02) possibly_damaging(0.873) TCGA-2W-A8YY-01 19 41128325 41128325 G T LTBP4 Missense_Mutation p.Q1145H 0.44 tolerated(0.09) benign(0.017) TCGA-2W-A8YY-01 19 41132969 41132969 C T LTBP4 Missense_Mutation p.P1425S 0.46 tolerated(0.08) possibly_damaging(0.757) TCGA-2W-A8YY-01 19 41135382 41135382 G A LTBP4 Missense_Mutation p.R1600H 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 19 41223573 41223573 C T ITPKC Missense_Mutation p.T178M 0.24 tolerated_low_confidence(0.07) benign(0.058) TCGA-2W-A8YY-01 19 41223864 41223864 G A ITPKC Missense_Mutation p.G275D 0.35 tolerated_low_confidence(0.13) benign(0.028) TCGA-2W-A8YY-01 19 41246317 41246317 G A ITPKC 3'UTR 0.34 TCGA-2W-A8YY-01 19 41268834 41268834 G A SNRPA Missense_Mutation p.R152H 0.10 tolerated(0.06) benign(0.198) TCGA-2W-A8YY-01 19 41292813 41292813 A G RAB4B Missense_Mutation p.Q196R 0.17 tolerated(0.55) benign(0.001) TCGA-2W-A8YY-01 19 41302678 41302678 C T RAB4B 3'Flank 0.32 TCGA-2W-A8YY-01 19 41307130 41307130 G A EGLN2 Missense_Mutation p.R218H 0.14 tolerated(0.12) possibly_damaging(0.572) TCGA-2W-A8YY-01 19 41312507 41312507 C T EGLN2 Silent p.H297H 0.29 TCGA-2W-A8YY-01 19 41351994 41351994 C A CYP2A6 Missense_Mutation p.K280N 0.44 benign(0.008) TCGA-2W-A8YY-01 19 41352870 41352870 G A CYP2A6 Silent p.F247F 0.37 TCGA-2W-A8YY-01 19 41354250 41354250 G A CYP2A6 Silent p.R176R 0.10 TCGA-2W-A8YY-01 19 41383828 41383828 G A CYP2A7 Missense_Mutation p.A301V 0.37 deleterious(0) possibly_damaging(0.639) TCGA-2W-A8YY-01 19 41386078 41386078 C T CYP2A7 Missense_Mutation p.D189N 0.38 tolerated(0.44) benign(0.015) TCGA-2W-A8YY-01 19 41406056 41406056 G A CYP2G1P RNA 0.38 TCGA-2W-A8YY-01 19 41631404 41631404 G A CYP2F1 Missense_Mutation p.D387N 0.17 tolerated(0.44) benign(0.009) TCGA-2W-A8YY-01 19 41700499 41700499 G A CYP2S1 Silent p.R76R 0.13 TCGA-2W-A8YY-01 19 41725307 41725307 C T AXL Missense_Mutation p.R4W 0.47 deleterious_low_confidence(0) possibly_damaging(0.531) TCGA-2W-A8YY-01 19 41811749 41811749 C T HNRNPUL1 Missense_Mutation p.P811S 0.37 tolerated_low_confidence(0.08) unknown(0) TCGA-2W-A8YY-01 19 41829678 41829678 C T CCDC97 3'UTR 0.27 TCGA-2W-A8YY-01 19 41860636 41860636 C T B9D2 Missense_Mutation p.R166H 0.36 deleterious(0) possibly_damaging(0.586) TCGA-2W-A8YY-01 19 41860696 41860696 C T B9D2 Missense_Mutation p.R146H 0.14 deleterious(0.03) probably_damaging(0.983) TCGA-2W-A8YY-01 19 41889738 41889738 T C TMEM91 Missense_Mutation p.V160A 0.41 tolerated(0.07) probably_damaging(0.967) TCGA-2W-A8YY-01 19 41892519 41892519 C T EXOSC5 3'UTR 0.33 TCGA-2W-A8YY-01 19 41897803 41897803 C T EXOSC5 Silent p.T109T 0.35 TCGA-2W-A8YY-01 19 41897823 41897823 C T EXOSC5 Missense_Mutation p.E103K 0.32 deleterious(0) probably_damaging(0.926) TCGA-2W-A8YY-01 19 419041 419041 C T SHC2 Missense_Mutation p.V546M 0.30 tolerated(0.31) possibly_damaging(0.54) TCGA-2W-A8YY-01 19 41925081 41925081 G A BCKDHA Missense_Mutation p.A176T 0.30 deleterious(0.02) benign(0.116) TCGA-2W-A8YY-01 19 41925120 41925120 C T BCKDHA Missense_Mutation p.R189C 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 19 41930550 41930550 C T BCKDHA 3'UTR 0.36 TCGA-2W-A8YY-01 19 41932039 41932039 G A B3GNT8 Silent p.L215L 0.35 TCGA-2W-A8YY-01 19 41932112 41932112 G T B3GNT8 Missense_Mutation p.A191E 0.46 tolerated(0.33) benign(0.005) TCGA-2W-A8YY-01 19 41932380 41932380 C T B3GNT8 Missense_Mutation p.A102T 0.39 tolerated(0.33) probably_damaging(0.996) TCGA-2W-A8YY-01 19 42083678 42083678 G A CEACAM21 Missense_Mutation p.S64N 0.44 deleterious(0) possibly_damaging(0.786) TCGA-2W-A8YY-01 19 42191067 42191067 C A CEACAM7 Missense_Mutation p.E50D 0.45 tolerated(1) possibly_damaging(0.859) TCGA-2W-A8YY-01 19 422406 422406 C T SHC2 Missense_Mutation p.V454M 0.10 tolerated(0.21) benign(0.008) TCGA-2W-A8YY-01 19 42265941 42265941 C T CEACAM6 Silent p.N256N 0.41 TCGA-2W-A8YY-01 19 42270126 42270126 G A CEACAM6 Missense_Mutation p.G332S 0.29 tolerated(0.75) benign(0.013) TCGA-2W-A8YY-01 19 42301745 42301745 G A CEACAM3 Missense_Mutation p.G97S 0.40 deleterious(0.03) possibly_damaging(0.481) TCGA-2W-A8YY-01 19 42355812 42355812 T C DMRTC2 3'UTR 0.40 TCGA-2W-A8YY-01 19 42398576 42398576 G A ARHGEF1 Missense_Mutation p.S281N 0.41 tolerated(0.38) benign(0.357) TCGA-2W-A8YY-01 19 42411579 42411579 T G ARHGEF1 3'UTR 0.44 TCGA-2W-A8YY-01 19 42492732 42492732 G A ATP1A3 Missense_Mutation p.R10C 0.49 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-2W-A8YY-01 19 42584982 42584982 G A ZNF574 Missense_Mutation p.E742K 0.24 tolerated(0.35) benign(0.425) TCGA-2W-A8YY-01 19 42585244 42585244 A C ZNF574 Missense_Mutation p.K829T 0.26 deleterious(0.01) probably_damaging(0.925) TCGA-2W-A8YY-01 19 42594262 42594262 G A POU2F2 3'Flank 0.41 TCGA-2W-A8YY-01 19 42729207 42729207 A G ZNF526 Missense_Mutation p.T218A 0.27 tolerated(0.15) probably_damaging(0.985) TCGA-2W-A8YY-01 19 42730218 42730218 G A ZNF526 Missense_Mutation p.A555T 0.53 tolerated(0.28) probably_damaging(0.996) TCGA-2W-A8YY-01 19 42730231 42730231 C T ZNF526 Missense_Mutation p.A559V 0.27 tolerated(0.26) probably_damaging(0.994) TCGA-2W-A8YY-01 19 42730535 42730535 C T ZNF526 Silent p.G660G 0.22 TCGA-2W-A8YY-01 19 42730931 42730931 C T ZNF526 3'UTR 0.53 TCGA-2W-A8YY-01 19 42738710 42738710 C T GSK3A Missense_Mutation p.D263N 0.37 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 19 42751760 42751760 C A ERF 3'UTR 0.08 TCGA-2W-A8YY-01 19 42752268 42752268 C T ERF 3'UTR 0.33 TCGA-2W-A8YY-01 19 42791757 42791757 C T CIC Missense_Mutation p.R215W 0.56 probably_damaging(1) TCGA-2W-A8YY-01 19 42801404 42801404 G A PAFAH1B3 Silent p.A174A 0.25 TCGA-2W-A8YY-01 19 42813883 42813883 T G PRR19 Missense_Mutation p.I49M 0.11 tolerated(0.26) benign(0.243) TCGA-2W-A8YY-01 19 42840214 42840214 C A MEGF8 Silent p.L320L 0.45 TCGA-2W-A8YY-01 19 42848136 42848136 G A MEGF8 Missense_Mutation p.D567N 0.48 tolerated(0.28) possibly_damaging(0.653) TCGA-2W-A8YY-01 19 42848145 42848145 G A MEGF8 Missense_Mutation p.V570I 0.50 tolerated(0.21) benign(0.031) TCGA-2W-A8YY-01 19 42854324 42854324 C T MEGF8 Missense_Mutation p.P775S 0.42 deleterious(0.01) probably_damaging(0.98) TCGA-2W-A8YY-01 19 42873862 42873862 G A MEGF8 Missense_Mutation p.R2207H 0.39 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 19 42910448 42910448 G A LIPE Missense_Mutation p.R744W 0.49 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 19 42911800 42911800 G A LIPE Silent p.P600P 0.44 TCGA-2W-A8YY-01 19 43016546 43016546 T C CEACAM1 Missense_Mutation p.I444M 0.55 tolerated(0.08) probably_damaging(0.924) TCGA-2W-A8YY-01 19 43025433 43025433 G A CEACAM1 Missense_Mutation p.T315M 0.40 tolerated(0.21) benign(0.027) TCGA-2W-A8YY-01 19 4323555 4323555 C T FSD1 Missense_Mutation p.T469M 0.38 tolerated(0.21) possibly_damaging(0.564) TCGA-2W-A8YY-01 19 4323683 4323683 G A FSD1 3'UTR 0.55 TCGA-2W-A8YY-01 19 43236948 43236948 G T PSG3 Missense_Mutation p.L233M 0.34 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 19 4323701 4323701 C T FSD1 3'UTR 0.29 TCGA-2W-A8YY-01 19 4323779 4323779 G A FSD1 3'UTR 0.37 TCGA-2W-A8YY-01 19 4326955 4326955 G - STAP2 Frame_Shift_Del p.S272Pfs*40 0.25 TCGA-2W-A8YY-01 19 43420328 43420328 G A PSG6 Nonsense_Mutation p.R126* 0.38 TCGA-2W-A8YY-01 19 43528935 43528935 G A PSG11 Missense_Mutation p.T113I 0.34 deleterious(0.05) probably_damaging(0.997) TCGA-2W-A8YY-01 19 4352918 4352918 G A MPND Missense_Mutation p.E186K 0.39 tolerated(0.13) benign(0.138) TCGA-2W-A8YY-01 19 4362613 4362613 G A SH3GL1 Silent p.I283I 0.44 TCGA-2W-A8YY-01 19 43674239 43674239 C A PSG5 3'UTR 0.32 TCGA-2W-A8YY-01 19 43690572 43690572 C T PSG5 5'UTR 0.45 TCGA-2W-A8YY-01 19 43699306 43699306 C A PSG4 Missense_Mutation p.G277C 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-2W-A8YY-01 19 43708129 43708129 C T PSG4 Silent p.T113T 0.40 TCGA-2W-A8YY-01 19 43762387 43762387 C A PSG9 Nonsense_Mutation p.E404* 0.39 TCGA-2W-A8YY-01 19 43766225 43766225 G A PSG9 Missense_Mutation p.R166C 0.35 deleterious(0.05) possibly_damaging(0.505) TCGA-2W-A8YY-01 19 43864511 43864511 C T CD177 3'UTR 0.43 TCGA-2W-A8YY-01 19 43864520 43864520 G A CD177 3'UTR 0.42 TCGA-2W-A8YY-01 19 43910597 43910597 C T TEX101 5'UTR 0.36 TCGA-2W-A8YY-01 19 43922520 43922520 C T TEX101 Silent p.L259L 0.31 TCGA-2W-A8YY-01 19 43965031 43965031 G A LYPD3 3'UTR 0.29 TCGA-2W-A8YY-01 19 43999407 43999407 C T PHLDB3 Splice_Site p.X345_splice 0.50 TCGA-2W-A8YY-01 19 44056181 44056181 C T XRCC1 Missense_Mutation p.S357N 0.39 deleterious(0.01) probably_damaging(0.96) TCGA-2W-A8YY-01 19 44086222 44086222 G A PINLYP 3'UTR 0.53 TCGA-2W-A8YY-01 19 44171737 44171737 C T PLAUR Nonsense_Mutation p.W54* 0.40 TCGA-2W-A8YY-01 19 44222980 44222980 G T IRGC Missense_Mutation p.M90I 0.25 tolerated(0.23) benign(0) TCGA-2W-A8YY-01 19 4432122 4432122 C T CHAF1A Silent p.F707F 0.29 TCGA-2W-A8YY-01 19 4433068 4433068 C A CHAF1A Silent p.I735I 0.09 TCGA-2W-A8YY-01 19 44351703 44351703 A C ZNF283 Missense_Mutation p.K317T 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 19 44419323 44419323 G T ZNF45 Missense_Mutation p.L89I 0.30 tolerated(0.37) benign(0.028) TCGA-2W-A8YY-01 19 4445509 4445509 C T UBXN6 Missense_Mutation p.E438K 0.11 tolerated(0.15) benign(0.019) TCGA-2W-A8YY-01 19 44512983 44512983 G A ZNF230 Silent p.E19E 0.40 TCGA-2W-A8YY-01 19 44516697 44516697 T C ZNF230 3'UTR 0.40 TCGA-2W-A8YY-01 19 44570820 44570820 G T ZNF223 Missense_Mutation p.R280I 0.43 deleterious(0.02) benign(0.041) TCGA-2W-A8YY-01 19 44589908 44589908 G T ZNF284 Nonsense_Mutation p.G93* 0.26 TCGA-2W-A8YY-01 19 44590835 44590835 G A ZNF284 Missense_Mutation p.D402N 0.46 tolerated(0.05) possibly_damaging(0.479) TCGA-2W-A8YY-01 19 44612007 44612007 A - ZNF224 Frame_Shift_Del p.K566Nfs*47 0.19 TCGA-2W-A8YY-01 19 44635342 44635342 G A ZNF225 Missense_Mutation p.R192H 0.44 tolerated(0.74) benign(0.007) TCGA-2W-A8YY-01 19 44660443 44660443 G T ZNF234 Missense_Mutation p.A92S 0.36 tolerated(0.36) benign(0.034) TCGA-2W-A8YY-01 19 44662402 44662403 - T ZNF234 3'UTR 0.37 TCGA-2W-A8YY-01 19 44680168 44680168 G A ZNF226 Silent p.S251S 0.13 TCGA-2W-A8YY-01 19 44681382 44681382 C T ZNF226 Missense_Mutation p.A656V 0.46 deleterious(0.03) benign(0.03) TCGA-2W-A8YY-01 19 44740830 44740830 T G ZNF227 Missense_Mutation p.C749W 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 44778102 44778102 T C ZNF233 Missense_Mutation p.V430A 0.41 tolerated(0.76) benign(0.001) TCGA-2W-A8YY-01 19 44831716 44831716 C T ZNF112 Missense_Mutation p.R871H 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 19 44834048 44834048 T C ZNF112 Missense_Mutation p.T94A 0.50 tolerated(0.52) benign(0) TCGA-2W-A8YY-01 19 4488693 4488693 C T HDGFRP2 Silent p.S103S 0.42 TCGA-2W-A8YY-01 19 4488729 4488729 C T HDGFRP2 Silent p.D115D 0.42 TCGA-2W-A8YY-01 19 44980992 44980992 C A ZNF180 Missense_Mutation p.R569I 0.17 tolerated(0.2) probably_damaging(1) TCGA-2W-A8YY-01 19 4501930 4501930 C T HDGFRP2 Missense_Mutation p.R647W 0.14 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-2W-A8YY-01 19 45026899 45026899 G A CEACAM20 RNA 0.27 TCGA-2W-A8YY-01 19 4511738 4511738 T C PLIN4 Missense_Mutation p.K731R 0.17 tolerated(0.13) possibly_damaging(0.88) TCGA-2W-A8YY-01 19 45260362 45260362 G A BCL3 Missense_Mutation p.R203H 0.45 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 19 45260374 45260374 C T BCL3 Missense_Mutation p.T207M 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 4529095 4529095 C A PLIN5 Missense_Mutation p.E170D 0.47 tolerated(0.67) benign(0.058) TCGA-2W-A8YY-01 19 45316531 45316531 G A BCAM Missense_Mutation p.G177R 0.09 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 19 45377250 45377250 G A PVRL2 Missense_Mutation p.V285I 0.31 tolerated(0.1) benign(0.227) TCGA-2W-A8YY-01 19 45381698 45381698 G A PVRL2 Intron 0.36 TCGA-2W-A8YY-01 19 45404577 45404577 T C TOMM40 Intron 0.42 TCGA-2W-A8YY-01 19 45465299 45465299 A C CLPTM1 Missense_Mutation p.N51T 0.10 deleterious(0.02) probably_damaging(0.913) TCGA-2W-A8YY-01 19 45494505 45494505 C T CLPTM1 Missense_Mutation p.R477W 0.41 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 19 45495514 45495514 C T CLPTM1 Missense_Mutation p.L527F 0.47 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 19 45496011 45496011 G A CLPTM1 Silent p.T622T 0.44 TCGA-2W-A8YY-01 19 45525367 45525367 G T RELB Missense_Mutation p.K187N 0.35 tolerated(0.05) probably_damaging(0.998) TCGA-2W-A8YY-01 19 45543550 45543550 G A CLASRP Missense_Mutation p.R27Q 0.32 tolerated(0.16) possibly_damaging(0.488) TCGA-2W-A8YY-01 19 45555397 45555397 C T CLASRP Silent p.V56V 0.17 TCGA-2W-A8YY-01 19 4556039 4556039 G A SEMA6B Silent p.C144C 0.18 TCGA-2W-A8YY-01 19 45567681 45567681 G A CLASRP Missense_Mutation p.R401H 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-2W-A8YY-01 19 45641785 45641785 C T PPP1R37 Silent p.T72T 0.33 TCGA-2W-A8YY-01 19 45648688 45648688 G A PPP1R37 Silent p.A458A 0.64 TCGA-2W-A8YY-01 19 45649712 45649712 C T PPP1R37 Silent p.S686S 0.44 TCGA-2W-A8YY-01 19 45655895 45655895 C T NKPD1 Silent p.A600A 0.56 TCGA-2W-A8YY-01 19 45655999 45655999 C T NKPD1 Missense_Mutation p.A566T 0.41 tolerated(0.47) benign(0.031) TCGA-2W-A8YY-01 19 45683643 45683643 A G BLOC1S3 3'UTR 0.56 TCGA-2W-A8YY-01 19 45716260 45716260 C T EXOC3L2 3'UTR 0.10 TCGA-2W-A8YY-01 19 45806451 45806451 C T MARK4 3'UTR 0.34 TCGA-2W-A8YY-01 19 45818813 45818813 C T CKM Missense_Mutation p.V131I 0.12 tolerated(0.28) benign(0.178) TCGA-2W-A8YY-01 19 45851953 45851953 C T KLC3 Nonsense_Mutation p.Q277* 0.46 TCGA-2W-A8YY-01 19 45854872 45854872 C T ERCC2 3'UTR 0.40 TCGA-2W-A8YY-01 19 45855588 45855588 C T ERCC2 Missense_Mutation p.R690Q 0.08 deleterious(0.03) probably_damaging(0.96) TCGA-2W-A8YY-01 19 45901317 45901317 C T PPP1R13L Silent p.S48S 0.51 TCGA-2W-A8YY-01 19 45913060 45913060 T C CD3EAP 3'UTR 0.33 TCGA-2W-A8YY-01 19 45916967 45916967 G T ERCC1 Missense_Mutation p.L271M 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 19 45976114 45976114 A C FOSB Missense_Mutation p.Q287H 0.36 tolerated(0.09) benign(0.004) TCGA-2W-A8YY-01 19 45978378 45978378 G A FOSB 3'UTR 0.33 TCGA-2W-A8YY-01 19 45998093 45998093 G A RTN2 Missense_Mutation p.R84C 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-2W-A8YY-01 19 46002322 46002322 G A PPM1N Missense_Mutation p.E198K 0.25 tolerated(0.13) benign(0.192) TCGA-2W-A8YY-01 19 46002392 46002392 G A PPM1N Missense_Mutation p.R221H 0.24 tolerated(0.07) possibly_damaging(0.703) TCGA-2W-A8YY-01 19 46094165 46094165 C T GPR4 Silent p.S320S 0.32 TCGA-2W-A8YY-01 19 46095422 46095422 G A GPR4 5'UTR 0.36 TCGA-2W-A8YY-01 19 46095913 46095913 C A GPR4 5'UTR 0.21 TCGA-2W-A8YY-01 19 46119810 46119810 G A EML2 Missense_Mutation p.A674V 0.09 tolerated(0.16) benign(0.145) TCGA-2W-A8YY-01 19 46173918 46173918 G A GIPR Missense_Mutation p.G33E 0.54 tolerated(0.3) benign(0.002) TCGA-2W-A8YY-01 19 46215177 46215177 C T FBXO46 Missense_Mutation p.R526H 0.40 deleterious(0) probably_damaging(0.936) TCGA-2W-A8YY-01 19 46288973 46288973 T C DMWD Missense_Mutation p.E594G 0.31 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 19 46290008 46290008 G A DMWD Missense_Mutation p.S249L 0.38 tolerated(0.21) benign(0.004) TCGA-2W-A8YY-01 19 46308177 46308177 G A RSPH6A Missense_Mutation p.A329V 0.35 deleterious(0) probably_damaging(0.937) TCGA-2W-A8YY-01 19 46329611 46329611 C T SYMPK Silent p.L734L 0.33 TCGA-2W-A8YY-01 19 46357673 46357673 G A SYMPK Silent p.I27I 0.27 TCGA-2W-A8YY-01 19 46375663 46375663 C T FOXA3 Missense_Mutation p.P134S 0.27 tolerated(0.13) benign(0.421) TCGA-2W-A8YY-01 19 46375886 46375886 G A FOXA3 Missense_Mutation p.R208H 0.40 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 19 46394217 46394217 G A MYPOP Silent p.S288S 0.36 TCGA-2W-A8YY-01 19 46404899 46404899 G A MYPOP Missense_Mutation p.R45C 0.28 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 19 46405023 46405023 C T MYPOP Silent p.S3S 0.16 TCGA-2W-A8YY-01 19 46405065 46405065 C T MYPOP 5'UTR 0.32 TCGA-2W-A8YY-01 19 4652121 4652121 C T TNFAIP8L1 Silent p.G80G 0.42 TCGA-2W-A8YY-01 19 4676417 4676417 C T DPP9 3'UTR 0.30 TCGA-2W-A8YY-01 19 46806905 46806905 A G HIF3A Intron 0.39 TCGA-2W-A8YY-01 19 46828851 46828851 C T HIF3A Silent p.S465S 0.26 TCGA-2W-A8YY-01 19 46890429 46890429 C T PPP5C Silent p.Y328Y 0.34 TCGA-2W-A8YY-01 19 46890692 46890692 C T PPP5C Nonsense_Mutation p.R373* 0.43 TCGA-2W-A8YY-01 19 46893360 46893360 C T PPP5C Missense_Mutation p.R470W 0.31 deleterious(0) possibly_damaging(0.804) TCGA-2W-A8YY-01 19 46894035 46894035 T C PPP5C 3'UTR 0.53 TCGA-2W-A8YY-01 19 46915858 46915858 G - CCDC8 Frame_Shift_Del p.K72Sfs*7 0.41 TCGA-2W-A8YY-01 19 46916678 46916678 C T CCDC8 5'UTR 0.32 TCGA-2W-A8YY-01 19 46999099 46999099 G T PNMAL2 5'UTR 0.33 TCGA-2W-A8YY-01 19 47155973 47155973 C T DACT3 Missense_Mutation p.R148H 0.56 tolerated(0.25) probably_damaging(0.984) TCGA-2W-A8YY-01 19 47155985 47155985 C T DACT3 Missense_Mutation p.S144N 0.48 tolerated(0.14) benign(0.011) TCGA-2W-A8YY-01 19 47225319 47225319 C T STRN4 Silent p.V679V 0.35 TCGA-2W-A8YY-01 19 47258744 47258744 G A FKRP Missense_Mutation p.A13T 0.29 tolerated(0.09) probably_damaging(0.996) TCGA-2W-A8YY-01 19 47422062 47422062 C T ARHGAP35 Missense_Mutation p.R44C 0.46 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 47422554 47422554 C T ARHGAP35 Missense_Mutation p.R208W 0.29 tolerated(0.06) probably_damaging(1) TCGA-2W-A8YY-01 19 47423942 47423942 G A ARHGAP35 Silent p.S670S 0.30 TCGA-2W-A8YY-01 19 47503930 47503930 C T ARHGAP35 Silent p.A1495A 0.09 TCGA-2W-A8YY-01 19 47567571 47567571 G A ZC3H4 3'UTR 0.49 TCGA-2W-A8YY-01 19 47570411 47570411 G T ZC3H4 Silent p.A1038A 0.09 TCGA-2W-A8YY-01 19 47570677 47570677 G A ZC3H4 Missense_Mutation p.R950W 0.49 unknown(0) TCGA-2W-A8YY-01 19 47725081 47725081 G A BBC3 Silent p.S221S 0.08 TCGA-2W-A8YY-01 19 47823428 47823428 G A C5AR1 Missense_Mutation p.A132T 0.28 deleterious(0.01) probably_damaging(0.97) TCGA-2W-A8YY-01 19 47880427 47880427 G A DHX34 Silent p.P890P 0.32 TCGA-2W-A8YY-01 19 47906587 47906587 G A MEIS3 3'UTR 0.30 TCGA-2W-A8YY-01 19 47910806 47910806 C T MEIS3 Silent p.P292P 0.27 TCGA-2W-A8YY-01 19 47932173 47932173 G T SLC8A2 3'UTR 0.44 TCGA-2W-A8YY-01 19 4794906 4794906 G A FEM1A 3'UTR 0.47 TCGA-2W-A8YY-01 19 47991634 47991634 C T NAPA Missense_Mutation p.D267N 0.11 tolerated(0.05) probably_damaging(0.923) TCGA-2W-A8YY-01 19 48048703 48048703 G A ZNF541 Silent p.G361G 0.47 TCGA-2W-A8YY-01 19 4817498 4817498 T C TICAM1 Missense_Mutation p.T298A 0.40 tolerated(0.53) benign(0.001) TCGA-2W-A8YY-01 19 48220127 48220127 C T EHD2 Silent p.S86S 0.09 TCGA-2W-A8YY-01 19 48221818 48221818 G A EHD2 Missense_Mutation p.D153N 0.39 deleterious(0.01) probably_damaging(0.911) TCGA-2W-A8YY-01 19 48229089 48229089 C T EHD2 Silent p.L175L 0.36 TCGA-2W-A8YY-01 19 48257821 48257821 G A GLTSCR2 Missense_Mutation p.R268Q 0.37 deleterious(0.01) possibly_damaging(0.83) TCGA-2W-A8YY-01 19 48386959 48386959 G A SULT2A1 Nonsense_Mutation p.R74* 0.45 TCGA-2W-A8YY-01 19 48581040 48581040 G A PLA2G4C Missense_Mutation p.P306S 0.30 tolerated(0.74) benign(0.013) TCGA-2W-A8YY-01 19 48631199 48631199 G A LIG1 Missense_Mutation p.P634S 0.42 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 19 48637322 48637322 C T LIG1 Missense_Mutation p.E509K 0.46 deleterious(0) probably_damaging(0.936) TCGA-2W-A8YY-01 19 48675187 48675187 C T C19orf68 Missense_Mutation p.A43V 0.40 tolerated(0.59) benign(0.068) TCGA-2W-A8YY-01 19 48800515 48800515 C T CCDC114 Silent p.T577T 0.53 TCGA-2W-A8YY-01 19 48821985 48821985 C T CCDC114 Missense_Mutation p.R15H 0.54 tolerated(0.09) benign(0.394) TCGA-2W-A8YY-01 19 48869072 48869072 C T SYNGR4 5'UTR 0.21 TCGA-2W-A8YY-01 19 48953925 48953925 C T GRWD1 Missense_Mutation p.R229C 0.40 tolerated(0.14) possibly_damaging(0.772) TCGA-2W-A8YY-01 19 48967845 48967845 C T KCNJ14 Silent p.S374S 0.41 TCGA-2W-A8YY-01 19 48989001 48989001 G A LMTK3 3'UTR 0.49 TCGA-2W-A8YY-01 19 49012181 49012181 C T LMTK3 Missense_Mutation p.V191M 0.49 probably_damaging(0.997) TCGA-2W-A8YY-01 19 49013724 49013724 C T LMTK3 Missense_Mutation p.G97S 0.45 probably_damaging(0.946) TCGA-2W-A8YY-01 19 49107038 49107038 G - FAM83E Frame_Shift_Del p.Q297Rfs*6 0.33 TCGA-2W-A8YY-01 19 49132048 49132048 G A SPHK2 Missense_Mutation p.R328H 0.38 deleterious(0.05) probably_damaging(0.932) TCGA-2W-A8YY-01 19 49132135 49132135 G A SPHK2 Missense_Mutation p.R357H 0.43 deleterious(0) probably_damaging(0.953) TCGA-2W-A8YY-01 19 49132664 49132664 G A SPHK2 Silent p.T533T 0.36 TCGA-2W-A8YY-01 19 49133816 49133816 C T SPHK2 3'Flank 0.10 TCGA-2W-A8YY-01 19 49134056 49134056 C T DBP 3'UTR 0.52 TCGA-2W-A8YY-01 19 49140248 49140248 C T DBP Missense_Mutation p.A2T 0.42 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-2W-A8YY-01 19 49142616 49142616 G A CA11 Silent p.S247S 0.40 TCGA-2W-A8YY-01 19 49164851 49164851 C T NTN5 3'UTR 0.14 TCGA-2W-A8YY-01 19 49170687 49170687 G T NTN5 Intron 0.43 TCGA-2W-A8YY-01 19 49183331 49183331 C T RN7SL345P 5'Flank 0.29 TCGA-2W-A8YY-01 19 49208609 49208609 G A FUT2 3'UTR 0.40 TCGA-2W-A8YY-01 19 49244178 49244178 G A IZUMO1 Missense_Mutation p.S347L 0.33 tolerated_low_confidence(0.2) benign(0.005) TCGA-2W-A8YY-01 19 49245490 49245490 G A IZUMO1 Silent p.G192G 0.23 TCGA-2W-A8YY-01 19 49247725 49247725 G A IZUMO1 Nonsense_Mutation p.R128* 0.38 TCGA-2W-A8YY-01 19 49254155 49254155 C T FUT1 Silent p.L128L 0.25 TCGA-2W-A8YY-01 19 49261363 49261363 C T FGF21 Silent p.P172P 0.26 TCGA-2W-A8YY-01 19 49299524 49299524 G T BCAT2 Intron 0.44 TCGA-2W-A8YY-01 19 4930863 4930863 G A MIR4747 5'Flank 0.44 TCGA-2W-A8YY-01 19 49363622 49363622 G A PLEKHA4 Missense_Mutation p.A154V 0.44 tolerated(0.42) possibly_damaging(0.696) TCGA-2W-A8YY-01 19 49398313 49398313 T G TULP2 Silent p.P152P 0.11 TCGA-2W-A8YY-01 19 49425106 49425106 G A NUCB1 Missense_Mutation p.R399Q 0.56 tolerated(0.13) possibly_damaging(0.564) TCGA-2W-A8YY-01 19 49469847 49469847 A G FTL Missense_Mutation p.D128G 0.36 deleterious(0.02) possibly_damaging(0.832) TCGA-2W-A8YY-01 19 49473901 49473901 G T GYS1 Missense_Mutation p.L571I 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-2W-A8YY-01 19 49481184 49481184 C T GYS1 Silent p.T435T 0.37 TCGA-2W-A8YY-01 19 49481246 49481246 C T GYS1 Missense_Mutation p.D415N 0.44 tolerated(0.13) probably_damaging(0.997) TCGA-2W-A8YY-01 19 4950964 4950964 A G UHRF1 RNA 0.37 TCGA-2W-A8YY-01 19 49510397 49510397 C T RUVBL2 Missense_Mutation p.R130C 0.33 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 19 49519463 49551121 19:49519463-49551121 - CGB1 large deletion 0.14 TCGA-2W-A8YY-01 19 49519473 49519473 G A LHB Missense_Mutation p.P93L 0.40 tolerated(0.26) benign(0.017) TCGA-2W-A8YY-01 19 49539456 49539456 C A CGB1 Missense_Mutation p.K38N 0.32 tolerated(0.13) benign(0.409) TCGA-2W-A8YY-01 19 4954449 4954449 G A UHRF1 RNA 0.48 TCGA-2W-A8YY-01 19 49560402 49560402 G A NTF4 3'Flank 0.39 TCGA-2W-A8YY-01 19 49573383 49573383 C A KCNA7 Missense_Mutation p.E436D 0.12 tolerated_low_confidence(0.18) benign(0.002) TCGA-2W-A8YY-01 19 49573763 49573763 G A KCNA7 Missense_Mutation p.R310C 0.21 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 49611072 49611072 C T SNRNP70 Missense_Mutation p.P229L 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-2W-A8YY-01 19 49611646 49611646 C T SNRNP70 Silent p.G420G 0.12 TCGA-2W-A8YY-01 19 49636391 49636391 C T PPFIA3 Missense_Mutation p.S338L 0.47 deleterious(0) benign(0.073) TCGA-2W-A8YY-01 19 49646104 49646104 C A PPFIA3 Missense_Mutation p.A863D 0.35 deleterious(0) possibly_damaging(0.817) TCGA-2W-A8YY-01 19 49671918 49671918 G A TRPM4 Missense_Mutation p.G241S 0.33 deleterious(0.01) possibly_damaging(0.707) TCGA-2W-A8YY-01 19 49674847 49674847 G A TRPM4 Missense_Mutation p.A291T 0.41 deleterious(0) possibly_damaging(0.781) TCGA-2W-A8YY-01 19 49686337 49686337 G A TRPM4 Missense_Mutation p.M537I 0.38 tolerated(0.28) benign(0.002) TCGA-2W-A8YY-01 19 49699701 49699701 G A TRPM4 Missense_Mutation p.A739T 0.16 tolerated(0.63) benign(0.001) TCGA-2W-A8YY-01 19 49700056 49700056 G A TRPM4 Missense_Mutation p.R857H 0.40 tolerated(0.4) benign(0.002) TCGA-2W-A8YY-01 19 49842700 49842700 G A CD37 Intron 0.10 TCGA-2W-A8YY-01 19 49843662 49843662 T G CD37 3'UTR 0.50 TCGA-2W-A8YY-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.45 TCGA-2W-A8YY-01 19 49863308 49863308 C T TEAD2 Missense_Mutation p.A9T 0.38 tolerated_low_confidence(0.78) benign(0.01) TCGA-2W-A8YY-01 19 49902312 49902312 C A CCDC155 Silent p.A220A 0.32 TCGA-2W-A8YY-01 19 49937876 49937876 G A SLC17A7 Missense_Mutation p.A207V 0.18 deleterious(0.03) benign(0.031) TCGA-2W-A8YY-01 19 49965914 49965914 C T ALDH16A1 Nonsense_Mutation p.R334* 0.42 TCGA-2W-A8YY-01 19 49967485 49967485 C T ALDH16A1 Silent p.S432S 0.44 TCGA-2W-A8YY-01 19 49971773 49971773 G A ALDH16A1 Missense_Mutation p.V692I 0.13 tolerated(0.16) benign(0.436) TCGA-2W-A8YY-01 19 50031802 50031802 G A RCN3 Missense_Mutation p.D25N 0.22 deleterious(0.05) benign(0.015) TCGA-2W-A8YY-01 19 50093682 50093682 C T PRRG2 3'UTR 0.38 TCGA-2W-A8YY-01 19 50096611 50096611 G A PRR12 Silent p.S38S 0.22 TCGA-2W-A8YY-01 19 50098071 50098071 G A PRR12 Missense_Mutation p.R160H 0.33 possibly_damaging(0.715) TCGA-2W-A8YY-01 19 50099858 50099858 C T PRR12 Silent p.L756L 0.43 TCGA-2W-A8YY-01 19 50099864 50099864 G A PRR12 Missense_Mutation p.A758T 0.36 possibly_damaging(0.682) TCGA-2W-A8YY-01 19 50128735 50128735 C T PRR12 Silent p.G1994G 0.35 TCGA-2W-A8YY-01 19 50155978 50155978 C T SCAF1 Missense_Mutation p.R778W 0.10 unknown(0) TCGA-2W-A8YY-01 19 50213683 50213683 G A CPT1C Missense_Mutation p.R558H 0.11 deleterious(0.04) benign(0.007) TCGA-2W-A8YY-01 19 50302079 50302079 C T AP2A1 Missense_Mutation p.R279W 0.32 deleterious(0.01) probably_damaging(0.989) TCGA-2W-A8YY-01 19 50302734 50302734 C T AP2A1 Silent p.T372T 0.38 TCGA-2W-A8YY-01 19 50306246 50306246 G A AP2A1 Missense_Mutation p.D741N 0.20 tolerated(0.09) benign(0.011) TCGA-2W-A8YY-01 19 50308759 50308759 G A AP2A1 Silent p.A820A 0.47 TCGA-2W-A8YY-01 19 50309944 50309944 C T AP2A1 Missense_Mutation p.R955W 0.35 deleterious(0) possibly_damaging(0.762) TCGA-2W-A8YY-01 19 50310129 50310129 G A AP2A1 3'UTR 0.48 TCGA-2W-A8YY-01 19 5032971 5032971 G T KDM4B Nonsense_Mutation p.E24* 0.27 TCGA-2W-A8YY-01 19 50387586 50387586 C T TBC1D17 Silent p.N401N 0.29 TCGA-2W-A8YY-01 19 50393174 50393174 G A IL4I1 Missense_Mutation p.P508L 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 50393207 50393207 C T IL4I1 Missense_Mutation p.R497H 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 19 50412928 50412928 G T NUP62 Missense_Mutation p.A46D 0.41 deleterious(0) unknown(0) TCGA-2W-A8YY-01 19 50434254 50434254 C T ATF5 Silent p.G49G 0.39 TCGA-2W-A8YY-01 19 50436176 50436176 C T ATF5 Missense_Mutation p.R226C 0.11 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 19 50475323 50475323 G A VRK3 3'Flank 0.32 TCGA-2W-A8YY-01 19 50498097 50498097 A T VRK3 Missense_Mutation p.S282T 0.20 tolerated(0.14) benign(0.048) TCGA-2W-A8YY-01 19 50519346 50519346 G T VRK3 Missense_Mutation p.S25Y 0.44 deleterious(0.04) possibly_damaging(0.683) TCGA-2W-A8YY-01 19 50534290 50534290 G A ZNF473 5'UTR 0.35 TCGA-2W-A8YY-01 19 50812981 50812981 G T MYH14 Missense_Mutation p.E2015D 0.34 tolerated(0.8) unknown(0) TCGA-2W-A8YY-01 19 50826666 50826666 G A KCNC3 Missense_Mutation p.S515L 0.14 tolerated(0.34) probably_damaging(0.914) TCGA-2W-A8YY-01 19 50826924 50826924 C T KCNC3 Missense_Mutation p.R429Q 0.25 tolerated(0.07) probably_damaging(0.998) TCGA-2W-A8YY-01 19 50831751 50831751 C T KCNC3 Missense_Mutation p.E197K 0.51 deleterious(0.01) possibly_damaging(0.594) TCGA-2W-A8YY-01 19 50861776 50861776 C T NAPSA 3'UTR 0.43 TCGA-2W-A8YY-01 19 50881477 50881477 G A NR1H2 Missense_Mutation p.E85K 0.44 deleterious(0) possibly_damaging(0.901) TCGA-2W-A8YY-01 19 50882299 50882299 G A NR1H2 Missense_Mutation p.R263H 0.35 tolerated(0.1) probably_damaging(0.913) TCGA-2W-A8YY-01 19 50885265 50885265 G A NR1H2 Missense_Mutation p.R357Q 0.41 deleterious(0.01) benign(0.333) TCGA-2W-A8YY-01 19 50885389 50885389 C T NR1H2 Silent p.Y398Y 0.11 TCGA-2W-A8YY-01 19 50905097 50905097 G A POLD1 Missense_Mutation p.A127T 0.43 deleterious(0) benign(0.349) TCGA-2W-A8YY-01 19 50905585 50905585 C T POLD1 Missense_Mutation p.T238M 0.13 tolerated(0.34) benign(0.096) TCGA-2W-A8YY-01 19 50905630 50905630 G A POLD1 Missense_Mutation p.R253Q 0.43 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 19 50906366 50906366 C T POLD1 Missense_Mutation p.R343C 0.41 tolerated(0.09) possibly_damaging(0.479) TCGA-2W-A8YY-01 19 50916685 50916685 C T POLD1 Silent p.S719S 0.11 TCGA-2W-A8YY-01 19 50926190 50926190 G A SPIB Missense_Mutation p.E79K 0.38 tolerated(0.91) benign(0.009) TCGA-2W-A8YY-01 19 50939375 50939375 C T MYBPC2 Silent p.G101G 0.12 TCGA-2W-A8YY-01 19 50939380 50939380 G A MYBPC2 Missense_Mutation p.R103H 0.42 tolerated(1) benign(0.016) TCGA-2W-A8YY-01 19 50949190 50949190 G A MYBPC2 Missense_Mutation p.R396H 0.50 deleterious(0.01) probably_damaging(0.99) TCGA-2W-A8YY-01 19 50955207 50955207 G A MYBPC2 Missense_Mutation p.V566M 0.28 deleterious(0.02) probably_damaging(0.989) TCGA-2W-A8YY-01 19 50955237 50955237 G A MYBPC2 Missense_Mutation p.A576T 0.30 deleterious(0.02) benign(0.021) TCGA-2W-A8YY-01 19 50986267 50986268 - C EMC10 3'UTR 0.28 TCGA-2W-A8YY-01 19 51016028 51016028 G A ASPDH Missense_Mutation p.R108W 0.37 deleterious(0.01) possibly_damaging(0.72) TCGA-2W-A8YY-01 19 51021814 51021814 G A LRRC4B Missense_Mutation p.R386C 0.29 deleterious(0) probably_damaging(0.974) TCGA-2W-A8YY-01 19 51051966 51051966 T C LRRC4B Missense_Mutation p.T44A 0.31 tolerated_low_confidence(0.45) benign(0.217) TCGA-2W-A8YY-01 19 51132636 51132636 C T SYT3 Missense_Mutation p.G399D 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 51201120 51201120 C T SHANK1 Missense_Mutation p.R614H 0.34 benign(0.277) TCGA-2W-A8YY-01 19 51301229 51301229 C T C19orf48 3'UTR 0.50 TCGA-2W-A8YY-01 19 51301616 51301616 G C C19orf48 Silent p.G30G 0.42 TCGA-2W-A8YY-01 19 51329173 51329173 C T KLK15 Missense_Mutation p.G217D 0.26 tolerated(0.1) probably_damaging(0.995) TCGA-2W-A8YY-01 19 51329939 51329939 C A KLK15 Missense_Mutation p.G186W 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 51330355 51330355 C T KLK15 Missense_Mutation p.R87Q 0.45 tolerated(0.32) benign(0.106) TCGA-2W-A8YY-01 19 51330410 51330410 T A KLK15 Nonsense_Mutation p.R69* 0.57 TCGA-2W-A8YY-01 19 5133945 5133945 G T KDM4B Missense_Mutation p.R653M 0.44 benign(0.099) TCGA-2W-A8YY-01 19 51361381 51361381 C T KLK3 Silent p.Y101Y 0.33 TCGA-2W-A8YY-01 19 51451907 51451907 C A KLK5 Missense_Mutation p.D239Y 0.29 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 51512505 51512505 C T KLK9 Missense_Mutation p.R45Q 0.35 tolerated(0.11) possibly_damaging(0.542) TCGA-2W-A8YY-01 19 51518160 51518160 G T KLK10 Missense_Mutation p.L243I 0.43 tolerated(0.48) benign(0.06) TCGA-2W-A8YY-01 19 51532448 51532448 C T KLK12 Missense_Mutation p.G243E 0.40 tolerated_low_confidence(0.17) probably_damaging(0.969) TCGA-2W-A8YY-01 19 51532449 51532449 C T KLK12 Missense_Mutation p.G243R 0.35 tolerated_low_confidence(0.58) probably_damaging(0.979) TCGA-2W-A8YY-01 19 51581381 51581381 C T KLK14 Silent p.Q229Q 0.32 TCGA-2W-A8YY-01 19 51628372 51628372 G A SIGLEC9 Silent p.S47S 0.37 TCGA-2W-A8YY-01 19 51738445 51738445 G A CD33 Missense_Mutation p.G260E 0.10 deleterious(0) probably_damaging(0.951) TCGA-2W-A8YY-01 19 51837448 51837448 G A VSIG10L Missense_Mutation p.R806C 0.23 deleterious(0) possibly_damaging(0.847) TCGA-2W-A8YY-01 19 51841275 51841275 G A VSIG10L Silent p.I639I 0.35 TCGA-2W-A8YY-01 19 51844985 51844985 G A VSIG10L Missense_Mutation p.P106L 0.40 tolerated_low_confidence(0.34) benign(0) TCGA-2W-A8YY-01 19 51857488 51857488 G A ETFB Silent p.I135I 0.33 TCGA-2W-A8YY-01 19 51857950 51857950 G T ETFB 5'UTR 0.26 TCGA-2W-A8YY-01 19 51883372 51883372 G A LIM2 3'UTR 0.44 TCGA-2W-A8YY-01 19 51892601 51892601 G A C19orf84 Silent p.C66C 0.35 TCGA-2W-A8YY-01 19 51892752 51892752 G A C19orf84 Missense_Mutation p.S16F 0.30 tolerated(0.15) benign(0.006) TCGA-2W-A8YY-01 19 51916975 51916975 A G SIGLEC10 Silent p.A604A 0.11 TCGA-2W-A8YY-01 19 51919939 51919939 G A SIGLEC10 Silent p.T229T 0.35 TCGA-2W-A8YY-01 19 51958773 51958773 C T SIGLEC8 Missense_Mutation p.R317Q 0.43 tolerated(0.57) benign(0.049) TCGA-2W-A8YY-01 19 51961647 51961647 G A SIGLEC8 5'UTR 0.29 TCGA-2W-A8YY-01 19 51961657 51961657 C T SIGLEC8 5'UTR 0.29 TCGA-2W-A8YY-01 19 51984648 51984648 G A CEACAM18 Silent p.E195E 0.48 TCGA-2W-A8YY-01 19 52003489 52003489 G T SIGLEC12 Missense_Mutation p.L165M 0.40 deleterious(0.01) probably_damaging(0.985) TCGA-2W-A8YY-01 19 52034110 52034110 G A SIGLEC6 Silent p.P177P 0.39 TCGA-2W-A8YY-01 19 52034444 52034444 T C SIGLEC6 Missense_Mutation p.T133A 0.53 tolerated(0.75) benign(0.026) TCGA-2W-A8YY-01 19 52034451 52034451 G A SIGLEC6 Silent p.Y130Y 0.53 TCGA-2W-A8YY-01 19 52115622 52115622 A G SIGLEC5 Silent p.P506P 0.29 TCGA-2W-A8YY-01 19 5211707 5211707 G A PTPRS Missense_Mutation p.R1710C 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 5212088 5212088 G A PTPRS Missense_Mutation p.A1648V 0.42 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 19 52132636 52132636 C T SIGLEC5 Silent p.E225E 0.46 TCGA-2W-A8YY-01 19 52195950 52195950 C T SPACA6P-AS RNA 0.08 TCGA-2W-A8YY-01 19 5221085 5221085 G A PTPRS Silent p.S1127S 0.28 TCGA-2W-A8YY-01 19 52217192 52217192 C T HAS1 Missense_Mutation p.G409S 0.10 deleterious(0.03) possibly_damaging(0.701) TCGA-2W-A8YY-01 19 52217221 52217221 G A HAS1 Missense_Mutation p.A399V 0.37 tolerated(0.18) benign(0.008) TCGA-2W-A8YY-01 19 52222534 52222534 C T HAS1 Silent p.A209A 0.36 TCGA-2W-A8YY-01 19 52272471 52272472 - A FPR2 Frame_Shift_Ins p.E188* 0.29 TCGA-2W-A8YY-01 19 52394602 52394602 C T ZNF649 Missense_Mutation p.G263R 0.26 tolerated(0.63) benign(0.002) TCGA-2W-A8YY-01 19 52443899 52443899 T G ZNF613 Missense_Mutation p.F58V 0.38 deleterious(0.03) benign(0.03) TCGA-2W-A8YY-01 19 52448668 52448668 C T ZNF613 Missense_Mutation p.P511L 0.30 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 19 52469108 52469108 G A ZNF350 Nonsense_Mutation p.R200* 0.38 TCGA-2W-A8YY-01 19 52496650 52496650 C T ZNF615 Missense_Mutation p.R571H 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 52537396 52537396 C T ZNF432 Silent p.P512P 0.45 TCGA-2W-A8YY-01 19 52619230 52619230 A C ZNF616 Missense_Mutation p.L396R 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 52723068 52723068 G A PPP2R1A Missense_Mutation p.R418Q 0.33 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 19 52795316 52795316 C T ZNF766 3'UTR 0.73 TCGA-2W-A8YY-01 19 52824896 52824896 C A ZNF480 Silent p.S131S 0.42 TCGA-2W-A8YY-01 19 52856960 52856960 C T ZNF610 Missense_Mutation p.A30V 0.08 deleterious(0.01) probably_damaging(0.971) TCGA-2W-A8YY-01 19 52856965 52856965 G A ZNF610 Missense_Mutation p.E32K 0.49 deleterious(0.04) probably_damaging(0.99) TCGA-2W-A8YY-01 19 52869218 52869218 A G ZNF610 Missense_Mutation p.Y196C 0.32 deleterious(0.04) benign(0.394) TCGA-2W-A8YY-01 19 52869651 52869651 G A ZNF610 Silent p.A340A 0.45 TCGA-2W-A8YY-01 19 52942307 52942307 C T ZNF534 Missense_Mutation p.R545C 0.40 tolerated(0.07) benign(0.383) TCGA-2W-A8YY-01 19 52954813 52954813 G A ZNF578 5'Flank 0.30 TCGA-2W-A8YY-01 19 53014461 53014461 G A ZNF578 Missense_Mutation p.R276H 0.54 tolerated(0.54) benign(0.006) TCGA-2W-A8YY-01 19 53057649 53057649 C T ZNF808 Missense_Mutation p.R494C 0.40 tolerated(0.14) possibly_damaging(0.889) TCGA-2W-A8YY-01 19 53086619 53086619 A C ZNF701 Missense_Mutation p.K502T 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 19 53116357 53116357 A G ZNF83 Silent p.C487C 0.11 TCGA-2W-A8YY-01 19 53116705 53116705 T C ZNF83 Silent p.K371K 0.31 TCGA-2W-A8YY-01 19 53117568 53117568 C T ZNF83 Missense_Mutation p.E84K 0.50 deleterious(0.05) probably_damaging(0.952) TCGA-2W-A8YY-01 19 53209512 53209512 T G ZNF611 Missense_Mutation p.K266Q 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-2W-A8YY-01 19 53269459 53269459 C T ZNF600 Missense_Mutation p.R517H 0.38 tolerated(0.26) benign(0.008) TCGA-2W-A8YY-01 19 53303134 53303134 C A ZNF28 Missense_Mutation p.R655M 0.24 deleterious(0.03) probably_damaging(0.941) TCGA-2W-A8YY-01 19 53343380 53343380 T A ZNF468 3'UTR 0.40 TCGA-2W-A8YY-01 19 53344366 53344366 C T ZNF468 Missense_Mutation p.R394H 0.41 tolerated(0.31) benign(0.091) TCGA-2W-A8YY-01 19 53344465 53344465 C T ZNF468 Missense_Mutation p.G361D 0.27 tolerated(0.06) probably_damaging(0.973) TCGA-2W-A8YY-01 19 53384349 53384349 G T ZNF320 Missense_Mutation p.L344I 0.28 deleterious(0.02) probably_damaging(0.944) TCGA-2W-A8YY-01 19 53384377 53384377 G A ZNF320 Silent p.C334C 0.51 TCGA-2W-A8YY-01 19 53431673 53431673 G A ZNF321P 3'Flank 0.48 TCGA-2W-A8YY-01 19 53473201 53473201 G A ZNF702P RNA 0.37 TCGA-2W-A8YY-01 19 53512782 53512782 T C ERVV-1 5'Flank 0.42 TCGA-2W-A8YY-01 19 53513021 53513021 C T ERVV-1 5'Flank 0.25 TCGA-2W-A8YY-01 19 53572715 53572715 T C ZNF160 Missense_Mutation p.T358A 0.46 tolerated(0.98) benign(0.079) TCGA-2W-A8YY-01 19 535840 535840 C T CDC34 Missense_Mutation p.R61C 0.35 tolerated(0.08) benign(0.026) TCGA-2W-A8YY-01 19 535885 535885 C T CDC34 Missense_Mutation p.R76W 0.33 deleterious(0.01) probably_damaging(0.952) TCGA-2W-A8YY-01 19 53625796 53625796 T C ZNF415 5'UTR 0.45 TCGA-2W-A8YY-01 19 53770393 53770393 C T VN1R4 Missense_Mutation p.A176T 0.33 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 19 53855972 53855972 C T ZNF845 Missense_Mutation p.R682C 0.21 deleterious(0) probably_damaging(0.947) TCGA-2W-A8YY-01 19 53856828 53856828 G A ZNF845 Missense_Mutation p.G967E 0.39 tolerated(0.08) probably_damaging(0.947) TCGA-2W-A8YY-01 19 53857344 53857344 A G ZNF845 3'UTR 0.50 TCGA-2W-A8YY-01 19 53886044 53886044 G A ZNF525 3'UTR 0.39 TCGA-2W-A8YY-01 19 53886370 53886370 C T ZNF525 3'UTR 0.27 TCGA-2W-A8YY-01 19 53886614 53886614 G T ZNF525 3'UTR 0.37 TCGA-2W-A8YY-01 19 53913219 53913219 T G ZNF765 3'UTR 0.25 TCGA-2W-A8YY-01 19 53913554 53913554 C T ZNF765 3'UTR 0.50 TCGA-2W-A8YY-01 19 53950474 53950474 C T ZNF761 RNA 0.36 TCGA-2W-A8YY-01 19 53957946 53957946 C T ZNF761 RNA 0.32 TCGA-2W-A8YY-01 19 53994850 53994850 T C ZNF813 Missense_Mutation p.V455A 0.27 tolerated(1) benign(0.009) TCGA-2W-A8YY-01 19 54006941 54006941 T C CTD-2224J9.8 RNA 0.47 TCGA-2W-A8YY-01 19 54082704 54082704 G A ZNF331 3'UTR 0.28 TCGA-2W-A8YY-01 19 54105336 54105336 G A CTB-167G5.5 Silent p.S40S 0.30 TCGA-2W-A8YY-01 19 54140019 54140019 G A DPRX Missense_Mutation p.G118D 0.33 tolerated(0.07) benign(0.08) TCGA-2W-A8YY-01 19 54224371 54224371 G T MIR517B RNA 0.35 TCGA-2W-A8YY-01 19 54291978 54291978 C T NLRP12 3'Flank 0.39 TCGA-2W-A8YY-01 19 54297342 54297342 C T NLRP12 Silent p.A1049A 0.33 TCGA-2W-A8YY-01 19 54314084 54314084 C T NLRP12 Missense_Mutation p.A277T 0.19 tolerated(0.12) benign(0.028) TCGA-2W-A8YY-01 19 54377182 54377182 G A MYADM Silent p.S133S 0.37 TCGA-2W-A8YY-01 19 54378647 54378647 C T MYADM 3'UTR 0.40 TCGA-2W-A8YY-01 19 54378731 54378731 G A MYADM 3'UTR 0.36 TCGA-2W-A8YY-01 19 54379254 54379254 G A MYADM 3'UTR 0.39 TCGA-2W-A8YY-01 19 54418716 54418716 G A CACNG7 Silent p.R127R 0.41 TCGA-2W-A8YY-01 19 5455652 5455652 G A ZNRF4 Silent p.K50K 0.34 TCGA-2W-A8YY-01 19 5456007 5456007 G A ZNRF4 Missense_Mutation p.D169N 0.09 deleterious(0.03) possibly_damaging(0.616) TCGA-2W-A8YY-01 19 5456668 5456668 A G ZNRF4 Missense_Mutation p.Q389R 0.46 tolerated(1) benign(0) TCGA-2W-A8YY-01 19 54584636 54584636 C T TARM1 5'Flank 0.35 TCGA-2W-A8YY-01 19 54598293 54598293 G A OSCAR 3'UTR 0.40 TCGA-2W-A8YY-01 19 54598609 54598609 G A OSCAR 3'UTR 0.47 TCGA-2W-A8YY-01 19 54604059 54604059 G A OSCAR Silent p.L9L 0.39 TCGA-2W-A8YY-01 19 54609282 54609282 G A NDUFA3 Missense_Mutation p.V43I 0.36 tolerated(0.33) benign(0.003) TCGA-2W-A8YY-01 19 54627246 54627246 G A PRPF31 Missense_Mutation p.A216T 0.24 deleterious(0.03) probably_damaging(0.968) TCGA-2W-A8YY-01 19 54632680 54632680 G A PRPF31 Missense_Mutation p.G437R 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 54646665 54646665 C T CNOT3 5'UTR 0.36 TCGA-2W-A8YY-01 19 54648059 54648059 C T CNOT3 Silent p.G158G 0.38 TCGA-2W-A8YY-01 19 54649652 54649652 C T CNOT3 Missense_Mutation p.A237V 0.26 tolerated(0.11) benign(0.389) TCGA-2W-A8YY-01 19 54659117 54659117 G A CNOT3 Missense_Mutation p.R745H 0.36 deleterious(0) possibly_damaging(0.812) TCGA-2W-A8YY-01 19 54659253 54659253 C - LENG1 3'UTR 0.41 TCGA-2W-A8YY-01 19 54659360 54659361 - T LENG1 3'UTR 0.28 TCGA-2W-A8YY-01 19 54662031 54662031 G A LENG1 Nonsense_Mutation p.R101* 0.34 TCGA-2W-A8YY-01 19 54662181 54662181 G A LENG1 Missense_Mutation p.R51W 0.08 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 54664730 54664730 A G TMC4 Missense_Mutation p.S626P 0.17 tolerated(0.3) benign(0.003) TCGA-2W-A8YY-01 19 54665929 54665929 G A TMC4 Missense_Mutation p.A538V 0.33 deleterious(0) probably_damaging(0.921) TCGA-2W-A8YY-01 19 54668307 54668307 C T TMC4 Missense_Mutation p.R331H 0.08 deleterious(0.03) benign(0.017) TCGA-2W-A8YY-01 19 54677199 54677199 C T MBOAT7 3'UTR 0.27 TCGA-2W-A8YY-01 19 54677941 54677941 C T MBOAT7 Missense_Mutation p.A406T 0.46 deleterious(0) possibly_damaging(0.876) TCGA-2W-A8YY-01 19 54682606 54682606 C T MBOAT7 Missense_Mutation p.D303N 0.48 tolerated(0.1) benign(0.061) TCGA-2W-A8YY-01 19 54684671 54684671 G A MBOAT7 Missense_Mutation p.R225C 0.60 deleterious(0) probably_damaging(0.964) TCGA-2W-A8YY-01 19 54687461 54687461 C T MBOAT7 Missense_Mutation p.V146M 0.36 tolerated(0.18) benign(0.081) TCGA-2W-A8YY-01 19 54744436 54744436 G A LILRA6 Silent p.T324T 0.12 TCGA-2W-A8YY-01 19 54758761 54758761 C T LILRB5 Silent p.P364P 0.31 TCGA-2W-A8YY-01 19 54759276 54759276 G A LILRB5 Silent p.L275L 0.42 TCGA-2W-A8YY-01 19 54778495 54778495 G A LILRB2 3'UTR 0.40 TCGA-2W-A8YY-01 19 54780740 54780740 G A LILRB2 Silent p.A468A 0.51 TCGA-2W-A8YY-01 19 54849322 54849322 G A LILRA4 Silent p.F180F 0.28 TCGA-2W-A8YY-01 19 54930393 54930393 G A TTYH1 Missense_Mutation p.R73Q 0.45 tolerated(0.05) benign(0.178) TCGA-2W-A8YY-01 19 54962533 54962533 C T LENG8 Silent p.N4N 0.45 TCGA-2W-A8YY-01 19 54967962 54967962 G A LENG8 Silent p.L531L 0.42 TCGA-2W-A8YY-01 19 54969008 54969008 C T LENG8 Missense_Mutation p.S605L 0.10 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 19 55146744 55146744 C A LILRB1 Missense_Mutation p.L533I 0.38 tolerated(0.06) benign(0.271) TCGA-2W-A8YY-01 19 55221929 55221929 C T AC098784.2 3'Flank 0.09 TCGA-2W-A8YY-01 19 55263939 55263939 G A KIR2DL3 Missense_Mutation p.V332M 0.80 tolerated(0.14) benign(0.01) TCGA-2W-A8YY-01 19 55281263 55281263 C A KIR2DL1 5'UTR 0.79 TCGA-2W-A8YY-01 19 55349174 55349174 C A KIR2DS4 Missense_Mutation p.L72I 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.67) TCGA-2W-A8YY-01 19 55418123 55418123 C A NCR1 Missense_Mutation p.L105I 0.23 tolerated(0.49) possibly_damaging(0.707) TCGA-2W-A8YY-01 19 55434925 55434925 C T NLRP7 3'UTR 0.54 TCGA-2W-A8YY-01 19 55451739 55451739 C T NLRP7 Missense_Mutation p.V150I 0.25 tolerated(0.36) benign(0.025) TCGA-2W-A8YY-01 19 55501534 55501534 C T NLRP2 Silent p.H837H 0.47 TCGA-2W-A8YY-01 19 55526352 55526352 C - GP6 Frame_Shift_Del p.E321Kfs*21 0.40 TCGA-2W-A8YY-01 19 55556291 55556291 C T RDH13 3'UTR 0.55 TCGA-2W-A8YY-01 19 55603262 55603262 C T PPP1R12C Missense_Mutation p.A726T 0.12 tolerated(0.39) probably_damaging(0.99) TCGA-2W-A8YY-01 19 55606041 55606041 C T PPP1R12C Missense_Mutation p.R527Q 0.45 tolerated(0.12) benign(0.008) TCGA-2W-A8YY-01 19 55607520 55607520 C T PPP1R12C Missense_Mutation p.R351H 0.43 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 19 55614829 55614829 C T PPP1R12C Missense_Mutation p.G227S 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 55672079 55672079 C T DNAAF3 Missense_Mutation p.R394H 0.28 tolerated(0.12) benign(0.014) TCGA-2W-A8YY-01 19 55672679 55672679 G A DNAAF3 Silent p.S325S 0.42 TCGA-2W-A8YY-01 19 55710062 55710062 C T PTPRH Missense_Mutation p.A547T 0.31 possibly_damaging(0.893) TCGA-2W-A8YY-01 19 55740104 55740104 G A TMEM86B Silent p.D2D 0.40 TCGA-2W-A8YY-01 19 55741593 55741593 T C PPP6R1 3'UTR 0.23 TCGA-2W-A8YY-01 19 55742993 55742993 C T PPP6R1 Missense_Mutation p.E784K 0.27 tolerated_low_confidence(0.32) benign(0.001) TCGA-2W-A8YY-01 19 55756873 55756873 C T PPP6R1 Missense_Mutation p.R134H 0.27 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 19 55757028 55757028 G A PPP6R1 Silent p.C82C 0.35 TCGA-2W-A8YY-01 19 55805460 55805460 G A BRSK1 Silent p.A178A 0.36 TCGA-2W-A8YY-01 19 55831924 55831924 A G TMEM150B Splice_Site p.X43_splice 0.53 TCGA-2W-A8YY-01 19 55855211 55855211 G A SUV420H2 Missense_Mutation p.D184N 0.34 deleterious(0.04) probably_damaging(0.93) TCGA-2W-A8YY-01 19 55856022 55856022 G A AC020922.1 5'UTR 0.44 TCGA-2W-A8YY-01 19 55857661 55857661 C T SUV420H2 Silent p.Y217Y 0.40 TCGA-2W-A8YY-01 19 55866446 55866446 G A FAM71E2 3'UTR 0.78 TCGA-2W-A8YY-01 19 55871204 55871204 C T FAM71E2 Silent p.T344T 0.31 TCGA-2W-A8YY-01 19 55872393 55872393 C T FAM71E2 Missense_Mutation p.V245I 0.47 tolerated(0.28) benign(0.055) TCGA-2W-A8YY-01 19 55874331 55874331 T C FAM71E2 Missense_Mutation p.Y35C 0.13 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 19 55903027 55903027 C T RPL28 Missense_Mutation p.R144C 0.40 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 19 55944170 55944170 A T SHISA7 3'UTR 0.56 TCGA-2W-A8YY-01 19 56005072 56005072 C T SSC5D Nonsense_Mutation p.R336* 0.37 TCGA-2W-A8YY-01 19 56028864 56028864 C T SSC5D Missense_Mutation p.P1074L 0.39 benign(0.297) TCGA-2W-A8YY-01 19 56089121 56089121 G A ZNF579 3'UTR 0.39 TCGA-2W-A8YY-01 19 56103354 56103354 G T FIZ1 3'UTR 0.43 TCGA-2W-A8YY-01 19 56109134 56109134 C T FIZ1 Missense_Mutation p.R33H 0.29 deleterious(0) unknown(0) TCGA-2W-A8YY-01 19 56132592 56132592 C T ZNF784 3'UTR 0.56 TCGA-2W-A8YY-01 19 56160635 56160635 G A CCDC106 Silent p.Q32Q 0.36 TCGA-2W-A8YY-01 19 56162697 56162697 G A CCDC106 Missense_Mutation p.S121N 0.39 tolerated(0.12) benign(0.002) TCGA-2W-A8YY-01 19 56189958 56189958 G A EPN1 Missense_Mutation p.G100R 0.44 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 19 56319292 56319292 C T NLRP11 Missense_Mutation p.D644N 0.28 tolerated(0.16) possibly_damaging(0.888) TCGA-2W-A8YY-01 19 56321644 56321644 T C NLRP11 Missense_Mutation p.H111R 0.50 tolerated(0.29) benign(0) TCGA-2W-A8YY-01 19 56363545 56363545 G A NLRP4 Missense_Mutation p.M33I 0.38 deleterious(0) benign(0.1) TCGA-2W-A8YY-01 19 56379149 56379149 C T NLRP4 Missense_Mutation p.T754M 0.47 deleterious(0.02) benign(0.321) TCGA-2W-A8YY-01 19 56379186 56379186 C T NLRP4 Silent p.G766G 0.43 TCGA-2W-A8YY-01 19 5641861 5641861 C T SAFB Silent p.D150D 0.37 TCGA-2W-A8YY-01 19 56423639 56423639 G A NLRP13 Missense_Mutation p.S515F 0.55 tolerated(0.7) benign(0.02) TCGA-2W-A8YY-01 19 56600200 56600200 C T ZNF787 Missense_Mutation p.R114H 0.38 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 19 5661797 5661797 C T SAFB Missense_Mutation p.R711W 0.51 deleterious(0) unknown(0) TCGA-2W-A8YY-01 19 56672169 56672169 G T ZNF444 3'UTR 0.26 TCGA-2W-A8YY-01 19 56736305 56736305 G A ZSCAN5A Silent p.D37D 0.33 TCGA-2W-A8YY-01 19 5684877 5684877 C A HSD11B1L Missense_Mutation p.L12M 0.09 tolerated(0.09) probably_damaging(0.996) TCGA-2W-A8YY-01 19 56895409 56895409 G T ZNF582 Silent p.T459T 0.25 TCGA-2W-A8YY-01 19 56953294 56953294 G A ZNF667 Missense_Mutation p.P357L 0.49 deleterious(0.04) benign(0.003) TCGA-2W-A8YY-01 19 57035753 57035753 C T ZNF471 Missense_Mutation p.A106V 0.32 tolerated(1) benign(0) TCGA-2W-A8YY-01 19 57036704 57036704 G T ZNF471 Missense_Mutation p.R423I 0.43 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 19 57326922 57326922 C T PEG3 Missense_Mutation p.R963H 0.45 tolerated(0.7) benign(0.005) TCGA-2W-A8YY-01 19 57328870 57328870 T C PEG3 Missense_Mutation p.I314V 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-2W-A8YY-01 19 57640831 57640831 G A USP29 Missense_Mutation p.S263N 0.37 tolerated(0.35) possibly_damaging(0.831) TCGA-2W-A8YY-01 19 57646264 57646264 T - ZIM3 3'UTR 0.48 TCGA-2W-A8YY-01 19 57723203 57723203 C T ZNF264 Silent p.L246L 0.37 TCGA-2W-A8YY-01 19 57742667 57742667 C T AURKC Silent p.G17G 0.30 TCGA-2W-A8YY-01 19 57742675 57742675 G A AURKC Splice_Site p.X20_splice 0.40 TCGA-2W-A8YY-01 19 57746652 57746652 C T AURKC Missense_Mutation p.A266V 0.47 deleterious(0.02) probably_damaging(0.949) TCGA-2W-A8YY-01 19 57765233 57765233 G A ZNF805 Missense_Mutation p.G349D 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 57803565 57803565 C T ZNF460 Silent p.N552N 0.40 TCGA-2W-A8YY-01 19 57869131 57869131 C T ZNF304 Missense_Mutation p.R632C 0.22 deleterious(0) probably_damaging(0.939) TCGA-2W-A8YY-01 19 57888663 57888663 G A ZNF547 Missense_Mutation p.G107R 0.36 tolerated(0.14) benign(0.236) TCGA-2W-A8YY-01 19 57888766 57888766 C T ZNF547 Missense_Mutation p.P141L 0.45 tolerated(0.06) benign(0.002) TCGA-2W-A8YY-01 19 57889008 57889008 C A ZNF547 Missense_Mutation p.L222I 0.33 tolerated(0.31) benign(0.012) TCGA-2W-A8YY-01 19 5789664 5789664 C T DUS3L Missense_Mutation p.E152K 0.28 tolerated(0.69) benign(0.002) TCGA-2W-A8YY-01 19 57966915 57966915 C T VN1R1 Missense_Mutation p.A314T 0.39 tolerated(0.45) benign(0.324) TCGA-2W-A8YY-01 19 57985371 57985371 C T ZNF772 Nonsense_Mutation p.W247* 0.32 TCGA-2W-A8YY-01 19 57985697 57985697 A G ZNF772 Missense_Mutation p.S139P 0.50 tolerated(0.06) benign(0.391) TCGA-2W-A8YY-01 19 57999082 57999082 C T ZNF419 5'Flank 0.42 TCGA-2W-A8YY-01 19 58019896 58019896 C T ZNF773 3'Flank 0.37 TCGA-2W-A8YY-01 19 58048626 58048626 C T ZNF549 Missense_Mutation p.A85V 0.47 tolerated(1) benign(0) TCGA-2W-A8YY-01 19 58099912 58099912 T C ZIK1 Silent p.C26C 0.18 TCGA-2W-A8YY-01 19 58099984 58099984 C T ZIK1 Silent p.L50L 0.28 TCGA-2W-A8YY-01 19 58115721 58115721 G A ZNF530 Missense_Mutation p.R36K 0.42 tolerated(0.1) possibly_damaging(0.841) TCGA-2W-A8YY-01 19 58198418 58198418 G A ZNF551 Missense_Mutation p.A259T 0.27 tolerated(0.57) benign(0.029) TCGA-2W-A8YY-01 19 58213008 58213008 G A ZNF154 Nonsense_Mutation p.R437* 0.37 TCGA-2W-A8YY-01 19 58213940 58213940 C A ZNF154 Missense_Mutation p.S126I 0.36 tolerated(0.16) benign(0.021) TCGA-2W-A8YY-01 19 58220417 58220417 G T ZNF154 5'UTR 0.46 TCGA-2W-A8YY-01 19 582310 582310 C T BSG Silent p.D358D 0.40 TCGA-2W-A8YY-01 19 5824135 5824135 G T NRTN 5'UTR 0.31 TCGA-2W-A8YY-01 19 582828 582828 T G BSG 3'UTR 0.09 TCGA-2W-A8YY-01 19 582982 582982 C T BSG 3'UTR 0.37 TCGA-2W-A8YY-01 19 58319643 58319643 C T ZNF552 Missense_Mutation p.G330E 0.15 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 19 58353162 58353162 C T ZNF587B Missense_Mutation p.R374C 0.30 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 19 58384299 58384299 C A ZNF814 Missense_Mutation p.R820I 0.39 deleterious(0.02) benign(0.371) TCGA-2W-A8YY-01 19 58419112 58419112 C A ZNF417 3'UTR 0.30 TCGA-2W-A8YY-01 19 58420623 58420623 T C ZNF417 Silent p.Q341Q 0.40 TCGA-2W-A8YY-01 19 58420849 58420849 C T ZNF417 Missense_Mutation p.G266E 0.35 deleterious(0) benign(0.07) TCGA-2W-A8YY-01 19 5843511 5843511 C A FUT3 3'UTR 0.35 TCGA-2W-A8YY-01 19 5844264 5844264 G A FUT3 Missense_Mutation p.A196V 0.33 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 19 58455374 58455374 G T ZNF256 Missense_Mutation p.L30I 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-2W-A8YY-01 19 58469957 58469957 C A C19orf18 3'UTR 0.41 TCGA-2W-A8YY-01 19 58491345 58491345 C A ZNF606 Nonsense_Mutation p.E235* 0.37 TCGA-2W-A8YY-01 19 58514335 58514335 G A CTD-2368P22.1 Missense_Mutation p.S286N 0.33 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 19 58514594 58514594 C T CTD-2368P22.1 Nonsense_Mutation p.R318* 0.46 TCGA-2W-A8YY-01 19 58598321 58598321 C T ZSCAN18 Missense_Mutation p.D289N 0.13 tolerated(0.38) possibly_damaging(0.634) TCGA-2W-A8YY-01 19 58639596 58639596 C T ZNF329 Silent p.K425K 0.34 TCGA-2W-A8YY-01 19 58639615 58639615 C T ZNF329 Missense_Mutation p.R419K 0.57 deleterious(0.03) possibly_damaging(0.624) TCGA-2W-A8YY-01 19 58723892 58723892 C T ZNF274 Nonsense_Mutation p.R448* 0.31 TCGA-2W-A8YY-01 19 58724395 58724395 G A ZNF274 Silent p.E615E 0.53 TCGA-2W-A8YY-01 19 58772313 58772313 C T ZNF544 Missense_Mutation p.P114L 0.37 tolerated(0.81) benign(0) TCGA-2W-A8YY-01 19 58805616 58805616 C T ZNF8 Silent p.L148L 0.24 TCGA-2W-A8YY-01 19 58806423 58806423 C T ZNF8 Missense_Mutation p.R417W 0.29 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 58879910 58879910 C T ZNF837 Missense_Mutation p.D264N 0.30 tolerated(0.54) benign(0) TCGA-2W-A8YY-01 19 58904446 58904446 G A RPS5 Missense_Mutation p.R71H 0.51 deleterious(0.02) benign(0) TCGA-2W-A8YY-01 19 5894694 5894694 G A NDUFA11 Intron 0.16 TCGA-2W-A8YY-01 19 58967481 58967481 G A ZNF324B Silent p.T390T 0.48 TCGA-2W-A8YY-01 19 58967663 58967663 G A ZNF324B Missense_Mutation p.R451Q 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 19 58967728 58967728 C T ZNF324B Missense_Mutation p.R473C 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 58983290 58983290 C T ZNF324 Silent p.G477G 0.40 TCGA-2W-A8YY-01 19 58991924 58991924 A G ZNF446 Missense_Mutation p.Y395C 0.36 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 19 59028729 59028729 C T ZBTB45 Silent p.T104T 0.08 TCGA-2W-A8YY-01 19 59060431 59060431 G A TRIM28 Missense_Mutation p.D496N 0.35 tolerated(0.82) probably_damaging(0.994) TCGA-2W-A8YY-01 19 59062964 59062964 T G CHMP2A 3'UTR 0.37 TCGA-2W-A8YY-01 19 59068157 59068157 C T UBE2M Missense_Mutation p.V82M 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-2W-A8YY-01 19 59074575 59074575 G A MZF1 Missense_Mutation p.R357C 0.25 tolerated(0.11) benign(0.003) TCGA-2W-A8YY-01 19 59080626 59080626 A G MZF1 Intron 0.39 TCGA-2W-A8YY-01 19 59093396 59093396 G A CENPBD1P1 Intron 0.39 TCGA-2W-A8YY-01 19 5917919 5917919 C A RANBP3 Nonsense_Mutation p.E516* 0.23 TCGA-2W-A8YY-01 19 6013045 6013045 T C RFX2 Missense_Mutation p.D284G 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 607993 607993 C T HCN2 Silent p.F416F 0.46 TCGA-2W-A8YY-01 19 613292 613292 G A HCN2 Silent p.P543P 0.26 TCGA-2W-A8YY-01 19 616912 616912 G A HCN2 3'UTR 0.33 TCGA-2W-A8YY-01 19 6182923 6182923 C T ACSBG2 Silent p.V356V 0.39 TCGA-2W-A8YY-01 19 619291 619291 G A POLRMT Silent p.F1024F 0.30 TCGA-2W-A8YY-01 19 621606 621606 C T POLRMT Missense_Mutation p.A698T 0.44 tolerated(0.23) benign(0.053) TCGA-2W-A8YY-01 19 6217981 6217981 G A MLLT1 Silent p.S394S 0.37 TCGA-2W-A8YY-01 19 6222135 6222135 G A MLLT1 Silent p.S369S 0.35 TCGA-2W-A8YY-01 19 6222313 6222313 C T MLLT1 Missense_Mutation p.S310N 0.43 tolerated(0.24) benign(0.213) TCGA-2W-A8YY-01 19 6375601 6375601 G A PSPN Missense_Mutation p.R59C 0.28 deleterious(0.01) possibly_damaging(0.794) TCGA-2W-A8YY-01 19 6413647 6413647 G A KHSRP 3'UTR 0.38 TCGA-2W-A8YY-01 19 6414030 6414030 G A KHSRP 3'UTR 0.29 TCGA-2W-A8YY-01 19 6427500 6427500 G A SLC25A41 Missense_Mutation p.R213W 0.50 deleterious(0.01) benign(0.212) TCGA-2W-A8YY-01 19 6430151 6430151 A C SLC25A41 Missense_Mutation p.F129V 0.42 tolerated(0.44) benign(0.17) TCGA-2W-A8YY-01 19 6440210 6440210 C - SLC25A23 3'UTR 0.34 TCGA-2W-A8YY-01 19 6452395 6452395 G T SLC25A23 Silent p.A333A 0.38 TCGA-2W-A8YY-01 19 6467193 6467193 T G CRB3 3'UTR 0.40 TCGA-2W-A8YY-01 19 6467292 6467292 G A DENND1C 3'UTR 0.25 TCGA-2W-A8YY-01 19 6468904 6468904 A G DENND1C Missense_Mutation p.S490P 0.08 deleterious(0.01) probably_damaging(0.921) TCGA-2W-A8YY-01 19 6679175 6679175 C A C3 Nonsense_Mutation p.E1531* 0.34 TCGA-2W-A8YY-01 19 6693087 6693087 C T C3 Missense_Mutation p.A1080T 0.46 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 19 6697782 6697782 C T C3 Missense_Mutation p.E822K 0.58 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 19 6719308 6719308 C T C3 Missense_Mutation p.D61N 0.42 tolerated(0.15) benign(0.137) TCGA-2W-A8YY-01 19 6719332 6719332 C T C3 Missense_Mutation p.V53I 0.37 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 19 6730136 6730136 C T GPR108 3'UTR 0.33 TCGA-2W-A8YY-01 19 6732325 6732325 G A GPR108 Silent p.Y358Y 0.29 TCGA-2W-A8YY-01 19 6733022 6733022 C T GPR108 Silent p.K303K 0.37 TCGA-2W-A8YY-01 19 6750419 6750419 C T TRIP10 Silent p.S448S 0.44 TCGA-2W-A8YY-01 19 6753476 6753476 G A SH2D3A Missense_Mutation p.R521C 0.53 tolerated(0.09) probably_damaging(0.977) TCGA-2W-A8YY-01 19 6754314 6754314 G A SH2D3A Missense_Mutation p.A407V 0.43 tolerated(0.62) benign(0.034) TCGA-2W-A8YY-01 19 6755190 6755190 C T SH2D3A Silent p.T211T 0.33 TCGA-2W-A8YY-01 19 6755277 6755277 C T SH2D3A Silent p.P182P 0.34 TCGA-2W-A8YY-01 19 6763708 6763708 C T SH2D3A Missense_Mutation p.G18S 0.38 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 19 6772918 6772918 G A VAV1 Missense_Mutation p.A34T 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 19 681420 681420 C T FSTL3 Missense_Mutation p.A198V 0.35 tolerated(0.21) possibly_damaging(0.515) TCGA-2W-A8YY-01 19 6832207 6832207 G A VAV1 Missense_Mutation p.A502T 0.35 deleterious(0) possibly_damaging(0.803) TCGA-2W-A8YY-01 19 6848012 6848012 C T VAV1 Silent p.Y672Y 0.24 TCGA-2W-A8YY-01 19 6904062 6904062 G A EMR1 Missense_Mutation p.R273H 0.31 tolerated(0.58) benign(0.003) TCGA-2W-A8YY-01 19 6913826 6913826 C T EMR1 Missense_Mutation p.R429W 0.39 deleterious(0.01) possibly_damaging(0.776) TCGA-2W-A8YY-01 19 6926512 6926512 A G EMR1 Missense_Mutation p.I708V 0.36 tolerated(0.29) benign(0.173) TCGA-2W-A8YY-01 19 7117206 7117206 C A INSR Missense_Mutation p.R1337M 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-2W-A8YY-01 19 746868 746868 G A PALM 3'UTR 0.50 TCGA-2W-A8YY-01 19 747645 747645 G A PALM 3'UTR 0.38 TCGA-2W-A8YY-01 19 7523412 7523412 C T ARHGEF18 Silent p.P544P 0.51 TCGA-2W-A8YY-01 19 7528733 7528733 C T ARHGEF18 Nonsense_Mutation p.Q701* 0.40 TCGA-2W-A8YY-01 19 7537216 7537216 A G ARHGEF18 3'UTR 0.27 TCGA-2W-A8YY-01 19 7537292 7537292 C T ARHGEF18 3'UTR 0.30 TCGA-2W-A8YY-01 19 7584327 7584327 G A ZNF358 Missense_Mutation p.V67I 0.27 tolerated(0.21) benign(0) TCGA-2W-A8YY-01 19 7585428 7585428 C T ZNF358 Nonsense_Mutation p.Q434* 0.27 TCGA-2W-A8YY-01 19 7593806 7593806 G A MCOLN1 Missense_Mutation p.D362N 0.35 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 19 7594484 7594484 C T MCOLN1 Silent p.I415I 0.30 TCGA-2W-A8YY-01 19 7614869 7614869 G A PNPLA6 Missense_Mutation p.C571Y 0.39 tolerated(0.29) benign(0.023) TCGA-2W-A8YY-01 19 7615521 7615521 G A PNPLA6 Missense_Mutation p.G698S 0.28 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 19 7622088 7622088 G A PNPLA6 Silent p.T1115T 0.39 TCGA-2W-A8YY-01 19 7677238 7677238 G A CAMSAP3 Missense_Mutation p.R647Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 7685331 7685331 G A XAB2 Missense_Mutation p.T699M 0.38 deleterious(0.01) benign(0.046) TCGA-2W-A8YY-01 19 7687426 7687426 C T XAB2 Missense_Mutation p.G498D 0.52 deleterious(0) probably_damaging(0.937) TCGA-2W-A8YY-01 19 7707353 7707353 C T STXBP2 Missense_Mutation p.A278V 0.41 deleterious(0.03) benign(0.004) TCGA-2W-A8YY-01 19 7761716 7761716 G A FCER2 Missense_Mutation p.S155F 0.36 deleterious(0.04) possibly_damaging(0.823) TCGA-2W-A8YY-01 19 7806912 7806912 G A CD209 3'UTR 0.50 TCGA-2W-A8YY-01 19 7833850 7833850 C T CLEC4M Silent p.P392P 0.43 TCGA-2W-A8YY-01 19 7928084 7928084 G A EVI5L Missense_Mutation p.R686H 0.60 tolerated(0.55) benign(0.178) TCGA-2W-A8YY-01 19 7928717 7928717 C T EVI5L 3'Flank 0.08 TCGA-2W-A8YY-01 19 7963994 7963994 G T LRRC8E Missense_Mutation p.G196V 0.48 tolerated(0.28) probably_damaging(0.997) TCGA-2W-A8YY-01 19 7976142 7976142 G A MAP2K7 Missense_Mutation p.R288H 0.50 deleterious(0) possibly_damaging(0.795) TCGA-2W-A8YY-01 19 7977856 7977856 G A MAP2K7 3'UTR 0.38 TCGA-2W-A8YY-01 19 7978376 7978376 C T MAP2K7 3'UTR 0.54 TCGA-2W-A8YY-01 19 7979135 7979135 C A MAP2K7 3'UTR 0.35 TCGA-2W-A8YY-01 19 7989853 7989853 C T CTXN1 3'UTR 0.29 TCGA-2W-A8YY-01 19 8027020 8027020 G A ELAVL1 3'UTR 0.26 TCGA-2W-A8YY-01 19 803601 803601 G A PTBP1 Missense_Mutation p.G27E 0.27 deleterious(0.02) possibly_damaging(0.517) TCGA-2W-A8YY-01 19 804543 804543 G A PTBP1 Silent p.A149A 0.15 TCGA-2W-A8YY-01 19 8056582 8056582 A G ELAVL1 Missense_Mutation p.F40L 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 19 808620 808620 C T PTBP1 Nonsense_Mutation p.Q441* 0.12 TCGA-2W-A8YY-01 19 810598 810598 G A PTBP1 Missense_Mutation p.V507I 0.08 tolerated(0.07) possibly_damaging(0.71) TCGA-2W-A8YY-01 19 811129 811129 C T PTBP1 3'UTR 0.53 TCGA-2W-A8YY-01 19 8122781 8122781 C T CCL25 Missense_Mutation p.S141F 0.36 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 19 8137059 8137059 A T FBN3 Missense_Mutation p.F2654Y 0.35 tolerated(0.1) possibly_damaging(0.581) TCGA-2W-A8YY-01 19 813806 813806 C A LPPR3 Silent p.T335T 0.44 TCGA-2W-A8YY-01 19 8152832 8152832 C A FBN3 Splice_Site p.X2166_splice 0.35 TCGA-2W-A8YY-01 19 8326869 8326869 C T CERS4 Missense_Mutation p.A354V 0.33 tolerated(0.24) benign(0.003) TCGA-2W-A8YY-01 19 8367846 8367846 G A CD320 Missense_Mutation p.P174L 0.36 tolerated(0.26) benign(0) TCGA-2W-A8YY-01 19 8386384 8386384 C A RPS28 5'UTR 0.37 TCGA-2W-A8YY-01 19 8399234 8399234 C T KANK3 Missense_Mutation p.S466N 0.39 deleterious(0.04) benign(0.085) TCGA-2W-A8YY-01 19 8495661 8495661 G A MARCH2 Silent p.Q164Q 0.48 TCGA-2W-A8YY-01 19 8503333 8503333 G A MARCH2 Missense_Mutation p.R215H 0.36 tolerated(0.16) benign(0.015) TCGA-2W-A8YY-01 19 8548066 8548066 G T HNRNPM Missense_Mutation p.R382I 0.39 tolerated(0.1) benign(0.039) TCGA-2W-A8YY-01 19 8550798 8550798 C T HNRNPM Missense_Mutation p.R496C 0.24 tolerated(0.05) probably_damaging(0.993) TCGA-2W-A8YY-01 19 8550981 8550981 C T HNRNPM Missense_Mutation p.R557C 0.37 deleterious(0) probably_damaging(0.924) TCGA-2W-A8YY-01 19 8551958 8551958 C T HNRNPM Silent p.C676C 0.29 TCGA-2W-A8YY-01 19 856181 856181 C T ELANE 3'UTR 0.45 TCGA-2W-A8YY-01 19 8577925 8577925 G A ZNF414 Missense_Mutation p.R102C 0.44 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 19 8590378 8590378 G T MYO1F Missense_Mutation p.P947T 0.44 deleterious(0.04) benign(0.005) TCGA-2W-A8YY-01 19 8656961 8656961 G T ADAMTS10 Silent p.P538P 0.34 TCGA-2W-A8YY-01 19 8670602 8670602 C T ADAMTS10 5'UTR 0.29 TCGA-2W-A8YY-01 19 877121 877121 C T MED16 Silent p.L471L 0.34 TCGA-2W-A8YY-01 19 8807814 8807814 C T ACTL9 Missense_Mutation p.R413H 0.40 deleterious(0.05) benign(0.012) TCGA-2W-A8YY-01 19 890238 890238 G A MED16 Missense_Mutation p.T59I 0.45 deleterious(0.04) benign(0.05) TCGA-2W-A8YY-01 19 9001882 9001882 T C MUC16 Missense_Mutation p.T13456A 0.48 probably_damaging(0.969) TCGA-2W-A8YY-01 19 902118 902118 G T R3HDM4 Missense_Mutation p.S28R 0.25 tolerated_low_confidence(0.13) benign(0.003) TCGA-2W-A8YY-01 19 9048081 9048081 C T MUC16 Missense_Mutation p.V11184I 0.35 benign(0.016) TCGA-2W-A8YY-01 19 9056618 9056618 G A MUC16 Silent p.G10276G 0.40 TCGA-2W-A8YY-01 19 9057326 9057326 C T MUC16 Silent p.P10040P 0.42 TCGA-2W-A8YY-01 19 9062281 9062281 C T MUC16 Missense_Mutation p.G8389R 0.38 unknown(0) TCGA-2W-A8YY-01 19 9062795 9062795 C T MUC16 Silent p.V8217V 0.41 TCGA-2W-A8YY-01 19 9084574 9084574 T G MUC16 Missense_Mutation p.Q2414P 0.25 unknown(0) TCGA-2W-A8YY-01 19 9086981 9086981 C A MUC16 Missense_Mutation p.D1612Y 0.38 unknown(0) TCGA-2W-A8YY-01 19 9087533 9087533 C T MUC16 Missense_Mutation p.G1428R 0.36 unknown(0) TCGA-2W-A8YY-01 19 9088046 9088046 C T MUC16 Missense_Mutation p.A1257T 0.33 unknown(0) TCGA-2W-A8YY-01 19 9090666 9090666 C A MUC16 Missense_Mutation p.K383N 0.42 unknown(0) TCGA-2W-A8YY-01 19 9204266 9204266 G A OR1M1 Missense_Mutation p.A116T 0.33 tolerated(0.57) benign(0.103) TCGA-2W-A8YY-01 19 9213878 9213878 G T OR7G2 Silent p.L35L 0.09 TCGA-2W-A8YY-01 19 9237591 9237591 G T OR7G3 Missense_Mutation p.F12L 0.42 deleterious(0.02) benign(0.007) TCGA-2W-A8YY-01 19 9298235 9298235 T C OR7D2 3'UTR 0.38 TCGA-2W-A8YY-01 19 9407256 9407256 C T ZNF699 Missense_Mutation p.G275E 0.33 tolerated(0.05) benign(0.02) TCGA-2W-A8YY-01 19 9577998 9577998 C A ZNF560 Missense_Mutation p.R542I 0.24 deleterious(0) probably_damaging(0.928) TCGA-2W-A8YY-01 19 9578594 9578594 A G ZNF560 Silent p.I343I 0.40 TCGA-2W-A8YY-01 19 972067 972067 C T ARID3A 3'UTR 0.41 TCGA-2W-A8YY-01 19 9721754 9721754 G C ZNF561 Missense_Mutation p.Q195E 0.41 tolerated(0.11) benign(0.051) TCGA-2W-A8YY-01 19 9801213 9801213 T C ZNF812 Missense_Mutation p.I322M 0.41 tolerated(0.11) probably_damaging(0.914) TCGA-2W-A8YY-01 19 9929573 9929573 C T FBXL12 5'UTR 0.37 TCGA-2W-A8YY-01 19 9949309 9949309 C A PIN1 Missense_Mutation p.L86M 0.08 tolerated(0.25) benign(0.306) TCGA-2W-A8YY-01 19 9964955 9964955 G T OLFM2 Silent p.P424P 0.29 TCGA-2W-A8YY-01 19 9965407 9965407 A G OLFM2 Missense_Mutation p.Y274H 0.08 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 1 100155235 100155235 C T PALMD Silent p.Y473Y 0.35 TCGA-2W-A8YY-01 1 100488101 100488101 G T SLC35A3 3'UTR 0.50 TCGA-2W-A8YY-01 1 100503841 100503841 C T HIAT1 Missense_Mutation p.A18V 0.41 tolerated(0.38) benign(0) TCGA-2W-A8YY-01 1 100741234 100741234 T G RTCA Missense_Mutation p.V245G 0.39 deleterious(0.01) possibly_damaging(0.522) TCGA-2W-A8YY-01 1 101007234 101007234 G T GPR88 3'UTR 0.53 TCGA-2W-A8YY-01 1 101198030 101198030 A C VCAM1 Missense_Mutation p.S528R 0.40 tolerated(0.05) benign(0.169) TCGA-2W-A8YY-01 1 101479282 101479282 C T DPH5 Missense_Mutation p.G118D 0.12 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 1 101705579 101705579 G A S1PR1 Missense_Mutation p.G347S 0.46 tolerated(0.54) benign(0.126) TCGA-2W-A8YY-01 1 1017466 1017466 A G C1orf159 3'UTR 0.53 TCGA-2W-A8YY-01 1 10192518 10192518 A T UBE4B Missense_Mutation p.N668I 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 10197221 10197221 G A UBE4B Missense_Mutation p.R774H 0.43 tolerated(0.08) benign(0.273) TCGA-2W-A8YY-01 1 102290699 102290699 T G OLFM3 Missense_Mutation p.N159H 0.38 deleterious(0.01) possibly_damaging(0.656) TCGA-2W-A8YY-01 1 10231330 10231330 G A UBE4B Silent p.T1156T 0.14 TCGA-2W-A8YY-01 1 10240375 10240375 C T UBE4B 3'UTR 0.56 TCGA-2W-A8YY-01 1 103345441 103345441 A G COL11A1 Missense_Mutation p.I1691T 0.38 unknown(0) TCGA-2W-A8YY-01 1 103548359 103548359 A G COL11A1 Splice_Site p.X92_splice 0.42 TCGA-2W-A8YY-01 1 103548440 103548440 C A COL11A1 Missense_Mutation p.K65N 0.28 probably_damaging(0.914) TCGA-2W-A8YY-01 1 104077410 104077410 T C RNPC3 Missense_Mutation p.V125A 0.49 tolerated(0.34) benign(0.01) TCGA-2W-A8YY-01 1 104114287 104114287 A G AMY2B Silent p.T21T 0.19 TCGA-2W-A8YY-01 1 104162332 104162332 G A AMY2A Missense_Mutation p.A224T 0.17 tolerated(0.16) possibly_damaging(0.639) TCGA-2W-A8YY-01 1 104203237 104203237 C T AMY1A Missense_Mutation p.P347L 0.14 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 10431222 10431222 A G KIF1B Silent p.G1570G 0.35 TCGA-2W-A8YY-01 1 10440272 10440272 T - KIF1B 3'Flank 0.31 TCGA-2W-A8YY-01 1 10471591 10471591 G A PGD Silent p.A212A 0.21 TCGA-2W-A8YY-01 1 10523109 10523109 G A DFFA Intron 0.44 TCGA-2W-A8YY-01 1 10696827 10696827 T C CASZ1 3'UTR 0.41 TCGA-2W-A8YY-01 1 10697242 10697242 C T CASZ1 3'UTR 0.32 TCGA-2W-A8YY-01 1 10699667 10699667 C T CASZ1 Missense_Mutation p.G1538S 0.43 tolerated(0.79) probably_damaging(1) TCGA-2W-A8YY-01 1 10699887 10699887 G A CASZ1 Silent p.C1464C 0.46 TCGA-2W-A8YY-01 1 10700049 10700049 C T CASZ1 Silent p.S1410S 0.32 TCGA-2W-A8YY-01 1 10716775 10716775 G A CASZ1 Silent p.H476H 0.10 TCGA-2W-A8YY-01 1 10720136 10720136 G A CASZ1 Silent p.T321T 0.36 TCGA-2W-A8YY-01 1 10725190 10725190 T C CASZ1 Missense_Mutation p.D152G 0.09 tolerated_low_confidence(0.05) benign(0.008) TCGA-2W-A8YY-01 1 107691101 107691101 C A NTNG1 5'UTR 0.53 TCGA-2W-A8YY-01 1 108307782 108307782 C T VAV3 Silent p.G279G 0.43 TCGA-2W-A8YY-01 1 108926128 108926128 C T NBPF6 Intron 0.42 TCGA-2W-A8YY-01 1 109191118 109191119 - A HENMT1 3'UTR 0.37 TCGA-2W-A8YY-01 1 109191309 109191309 C T HENMT1 Missense_Mutation p.R354H 0.43 tolerated(0.51) benign(0.008) TCGA-2W-A8YY-01 1 109241280 109241280 C T PRPF38B Nonsense_Mutation p.R205* 0.43 TCGA-2W-A8YY-01 1 109243911 109243911 T C PRPF38B 3'UTR 0.42 TCGA-2W-A8YY-01 1 109321941 109321941 C T STXBP3 Missense_Mutation p.R240C 0.08 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 109395114 109395114 G A AKNAD1 Missense_Mutation p.A58V 0.38 tolerated(0.08) benign(0.105) TCGA-2W-A8YY-01 1 109465123 109465123 T C GPSM2 Missense_Mutation p.C509R 0.37 deleterious(0) probably_damaging(0.963) TCGA-2W-A8YY-01 1 109524435 109524435 G A WDR47 Missense_Mutation p.S781F 0.53 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 109560141 109560141 T - WDR47 Frame_Shift_Del p.R81Gfs*7 0.29 TCGA-2W-A8YY-01 1 109704581 109704581 G A KIAA1324 Silent p.P73P 0.38 TCGA-2W-A8YY-01 1 109794792 109794792 G T CELSR2 Missense_Mutation p.Q697H 0.47 tolerated(0.36) benign(0.188) TCGA-2W-A8YY-01 1 109795229 109795229 A G CELSR2 Missense_Mutation p.D843G 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 109801432 109801432 A G CELSR2 Missense_Mutation p.N1230S 0.46 deleterious(0) benign(0.09) TCGA-2W-A8YY-01 1 109805495 109805495 C T CELSR2 Nonsense_Mutation p.R1538* 0.29 TCGA-2W-A8YY-01 1 109808748 109808748 G A CELSR2 Missense_Mutation p.R1978Q 0.44 tolerated(0.09) benign(0.14) TCGA-2W-A8YY-01 1 109813890 109813890 C T CELSR2 Missense_Mutation p.R2550W 0.28 deleterious(0) possibly_damaging(0.773) TCGA-2W-A8YY-01 1 109817066 109817066 G A CELSR2 3'UTR 0.39 TCGA-2W-A8YY-01 1 109817284 109817284 A G CELSR2 3'UTR 0.11 TCGA-2W-A8YY-01 1 109853339 109853339 A T SORT1 3'UTR 0.55 TCGA-2W-A8YY-01 1 110029708 110029708 C T ATXN7L2 Silent p.C126C 0.48 TCGA-2W-A8YY-01 1 110031626 110031626 T C ATXN7L2 Missense_Mutation p.L314P 0.32 tolerated(0.3) benign(0) TCGA-2W-A8YY-01 1 110033712 110033712 C T ATXN7L2 Silent p.Y509Y 0.39 TCGA-2W-A8YY-01 1 110050908 110050908 C T AMIGO1 Silent p.P209P 0.38 TCGA-2W-A8YY-01 1 110087242 110087242 G A GPR61 3'UTR 0.25 TCGA-2W-A8YY-01 1 110134668 110134668 C A GNAI3 Missense_Mutation p.S293Y 0.37 deleterious(0.02) benign(0.308) TCGA-2W-A8YY-01 1 110134776 110134776 C T GNAI3 Missense_Mutation p.T329M 0.58 deleterious(0.01) probably_damaging(0.99) TCGA-2W-A8YY-01 1 110135265 110135265 T - GNAI3 3'UTR 0.31 TCGA-2W-A8YY-01 1 110146722 110146722 C T GNAT2 Missense_Mutation p.R242H 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 110170415 110170415 C T AMPD2 Missense_Mutation p.R378W 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 110170898 110170898 C T AMPD2 Missense_Mutation p.A479V 0.21 deleterious(0) probably_damaging(0.945) TCGA-2W-A8YY-01 1 11017760 11017760 G A C1orf127 Silent p.D202D 0.38 TCGA-2W-A8YY-01 1 110199921 110199921 C T GSTM4 Intron 0.59 TCGA-2W-A8YY-01 1 110236038 110236038 C T GSTM1 3'UTR 0.33 TCGA-2W-A8YY-01 1 110254896 110254896 C T GSTM5 5'UTR 0.46 TCGA-2W-A8YY-01 1 110256348 110256348 A G GSTM5 Missense_Mutation p.M109V 0.33 tolerated(0.16) benign(0.002) TCGA-2W-A8YY-01 1 110301990 110301990 C T EPS8L3 Missense_Mutation p.R92H 0.32 tolerated(0.2) benign(0.087) TCGA-2W-A8YY-01 1 1103312 1103312 C T MIR200A RNA 0.35 TCGA-2W-A8YY-01 1 110456949 110456949 G A CSF1 Silent p.S36S 0.32 TCGA-2W-A8YY-01 1 110566004 110566004 C T AHCYL1 3'UTR 0.32 TCGA-2W-A8YY-01 1 110566073 110566073 G A AHCYL1 3'UTR 0.15 TCGA-2W-A8YY-01 1 110597061 110597061 G T STRIP1 3'UTR 0.43 TCGA-2W-A8YY-01 1 110716634 110716634 G A SLC6A17 Missense_Mutation p.G162R 0.30 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 1 110765921 110765921 G A KCNC4 Silent p.A338A 0.15 TCGA-2W-A8YY-01 1 110775547 110775547 G A KCNC4 3'UTR 0.15 TCGA-2W-A8YY-01 1 11078911 11078911 G A TARDBP Missense_Mutation p.C175Y 0.23 tolerated(0.06) benign(0.003) TCGA-2W-A8YY-01 1 11087488 11087488 T C MASP2 Silent p.L505L 0.38 TCGA-2W-A8YY-01 1 110882423 110882423 A C RBM15 Missense_Mutation p.K132N 0.47 tolerated_low_confidence(0.68) benign(0) TCGA-2W-A8YY-01 1 110883433 110883433 C T RBM15 Missense_Mutation p.A469V 0.16 deleterious(0) possibly_damaging(0.869) TCGA-2W-A8YY-01 1 110884144 110884144 G A RBM15 Missense_Mutation p.R706Q 0.55 tolerated(0.25) benign(0.005) TCGA-2W-A8YY-01 1 1111412 1111412 G A TTLL10 Intron 0.43 TCGA-2W-A8YY-01 1 111216692 111216692 G A KCNA3 Missense_Mutation p.S247F 0.38 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 1 111217087 111217087 G A KCNA3 Silent p.F115F 0.36 TCGA-2W-A8YY-01 1 111439333 111439333 G A CD53 Missense_Mutation p.C161Y 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 111495234 111495234 G A LRIF1 Missense_Mutation p.A91V 0.49 deleterious(0.01) benign(0.008) TCGA-2W-A8YY-01 1 111668903 111668903 C T DRAM2 Missense_Mutation p.V49I 0.42 tolerated(0.67) benign(0.008) TCGA-2W-A8YY-01 1 111690484 111690484 C T CEPT1 Missense_Mutation p.R50W 0.25 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 1 111690485 111690485 G A CEPT1 Missense_Mutation p.R50Q 0.16 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 1 111826699 111826699 A C CHIAP2 RNA 0.30 TCGA-2W-A8YY-01 1 111828639 111828639 C T CHIA 5'Flank 0.27 TCGA-2W-A8YY-01 1 111857983 111857983 G T CHIA Missense_Mutation p.D136Y 0.39 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 111965606 111965606 G T OVGP1 Missense_Mutation p.A184D 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 111969720 111969720 G A OVGP1 Intron 0.28 TCGA-2W-A8YY-01 1 111985364 111985364 G A WDR77 Silent p.V237V 0.43 TCGA-2W-A8YY-01 1 111990078 111990078 A G WDR77 Missense_Mutation p.V141A 0.36 tolerated(0.06) benign(0.059) TCGA-2W-A8YY-01 1 111996864 111996864 G T ATP5F1 Missense_Mutation p.G37W 0.44 deleterious(0.01) possibly_damaging(0.901) TCGA-2W-A8YY-01 1 112042895 112042895 A C ADORA3 Intron 0.32 TCGA-2W-A8YY-01 1 112303700 112303700 C T DDX20 Silent p.S305S 0.12 TCGA-2W-A8YY-01 1 112305470 112305470 G A DDX20 Intron 0.34 TCGA-2W-A8YY-01 1 112309448 112309448 G T DDX20 Missense_Mutation p.R801I 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 112319762 112319762 C T KCND3 Missense_Mutation p.S551N 0.40 tolerated_low_confidence(0.56) benign(0.011) TCGA-2W-A8YY-01 1 112524809 112524809 C T KCND3 Silent p.T180T 0.35 TCGA-2W-A8YY-01 1 112999666 112999666 C T CTTNBP2NL Missense_Mutation p.P518S 0.41 tolerated(0.44) benign(0.004) TCGA-2W-A8YY-01 1 112999767 112999767 T C CTTNBP2NL Silent p.T551T 0.39 TCGA-2W-A8YY-01 1 112999907 112999907 C A CTTNBP2NL Missense_Mutation p.P598Q 0.39 deleterious(0) benign(0.024) TCGA-2W-A8YY-01 1 113000539 113000539 T G CTTNBP2NL 3'UTR 0.41 TCGA-2W-A8YY-01 1 113058948 113058948 G A WNT2B Missense_Mutation p.R197H 0.21 tolerated(0.1) benign(0.022) TCGA-2W-A8YY-01 1 113212992 113212992 T C CAPZA1 3'UTR 0.41 TCGA-2W-A8YY-01 1 113231760 113231760 G A MOV10 Missense_Mutation p.R114K 0.45 tolerated(0.13) benign(0.189) TCGA-2W-A8YY-01 1 113238869 113238869 G A MOV10 Missense_Mutation p.G627S 0.30 tolerated(0.3) benign(0.08) TCGA-2W-A8YY-01 1 113239131 113239131 G T MOV10 Missense_Mutation p.E652D 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 113246352 113246352 C T RHOC Missense_Mutation p.V24I 0.24 deleterious(0.03) benign(0.179) TCGA-2W-A8YY-01 1 113246353 113246353 G A RHOC Silent p.I23I 0.10 TCGA-2W-A8YY-01 1 113254636 113254636 C T PPM1J Missense_Mutation p.R295Q 0.39 tolerated(0.45) benign(0.015) TCGA-2W-A8YY-01 1 113255058 113255058 G A PPM1J Missense_Mutation p.R251W 0.37 deleterious(0.02) benign(0.025) TCGA-2W-A8YY-01 1 113255575 113255575 G A PPM1J Missense_Mutation p.H174Y 0.44 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 1 113255583 113255583 C T PPM1J Missense_Mutation p.R171Q 0.44 deleterious(0.04) benign(0.229) TCGA-2W-A8YY-01 1 113662077 113662077 C T LRIG2 Missense_Mutation p.P968L 0.41 tolerated(0.32) benign(0) TCGA-2W-A8YY-01 1 114184875 114184875 C T MAGI3 Missense_Mutation p.S568L 0.41 deleterious(0.02) probably_damaging(0.922) TCGA-2W-A8YY-01 1 114189176 114189176 T - MAGI3 Frame_Shift_Del p.P691Hfs*19 0.28 TCGA-2W-A8YY-01 1 114193727 114193727 C A MAGI3 Missense_Mutation p.P780H 0.18 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 1 114247342 114247342 T C PHTF1 Silent p.R583R 0.38 TCGA-2W-A8YY-01 1 114256053 114256053 T G PHTF1 Silent p.R211R 0.47 TCGA-2W-A8YY-01 1 114305793 114305793 T G RSBN1 3'UTR 0.38 TCGA-2W-A8YY-01 1 114308655 114308655 G A RSBN1 Silent p.L786L 0.47 TCGA-2W-A8YY-01 1 114309815 114309815 C T RSBN1 Missense_Mutation p.R614H 0.43 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 114380853 114380853 T - PTPN22 Frame_Shift_Del p.N390Mfs*6 0.23 TCGA-2W-A8YY-01 1 114380917 114380917 A C PTPN22 Missense_Mutation p.L369V 0.09 tolerated(0.4) benign(0.119) TCGA-2W-A8YY-01 1 114437904 114437904 G A AP4B1 Missense_Mutation p.T668I 0.22 deleterious(0.02) possibly_damaging(0.794) TCGA-2W-A8YY-01 1 114445390 114445390 G A AP4B1 Silent p.L70L 0.34 TCGA-2W-A8YY-01 1 114450676 114450676 C T DCLRE1B Missense_Mutation p.T134I 0.25 tolerated(0.19) benign(0.005) TCGA-2W-A8YY-01 1 114455647 114455647 C T DCLRE1B 3'UTR 0.25 TCGA-2W-A8YY-01 1 114455940 114455940 G A DCLRE1B 3'UTR 0.42 TCGA-2W-A8YY-01 1 114504986 114504986 G A HIPK1 Missense_Mutation p.D677N 0.38 deleterious(0.01) benign(0.131) TCGA-2W-A8YY-01 1 114506117 114506117 C T HIPK1 Silent p.L738L 0.27 TCGA-2W-A8YY-01 1 114511254 114511254 A G HIPK1 Missense_Mutation p.K919E 0.11 deleterious(0.03) benign(0.298) TCGA-2W-A8YY-01 1 114514527 114514527 G A HIPK1 Missense_Mutation p.R1032Q 0.36 deleterious(0.02) benign(0.336) TCGA-2W-A8YY-01 1 114517665 114517665 G A HIPK1 3'UTR 0.19 TCGA-2W-A8YY-01 1 114518795 114518795 G A HIPK1 3'UTR 0.27 TCGA-2W-A8YY-01 1 114520236 114520236 A G HIPK1 3'UTR 0.26 TCGA-2W-A8YY-01 1 114523298 114523298 G A OLFML3 Intron 0.29 TCGA-2W-A8YY-01 1 114633625 114633625 G A SYT6 3'UTR 0.39 TCGA-2W-A8YY-01 1 114646246 114646246 G A SYT6 Missense_Mutation p.A305V 0.18 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 114942193 114942193 A G TRIM33 Silent p.D1002D 0.36 TCGA-2W-A8YY-01 1 115161059 115161059 C T DENND2C Silent p.K424K 0.29 TCGA-2W-A8YY-01 1 115251235 115251235 C T NRAS Missense_Mutation p.R164H 0.49 deleterious(0.01) benign(0) TCGA-2W-A8YY-01 1 115252204 115252204 C A NRAS Missense_Mutation p.A146S 0.08 deleterious(0.02) possibly_damaging(0.462) TCGA-2W-A8YY-01 1 115260319 115260319 G A CSDE1 3'UTR 0.28 TCGA-2W-A8YY-01 1 115321800 115321800 G A SIKE1 Missense_Mutation p.A128V 0.51 tolerated(0.17) benign(0.189) TCGA-2W-A8YY-01 1 115400095 115400095 G T SYCP1 Nonsense_Mutation p.G90* 0.43 TCGA-2W-A8YY-01 1 11575538 11575538 C T PTCHD2 Silent p.A522A 0.48 TCGA-2W-A8YY-01 1 116237945 116237945 C T VANGL1 3'UTR 0.32 TCGA-2W-A8YY-01 1 116283407 116283407 C T CASQ2 Missense_Mutation p.R121H 0.49 tolerated(0.29) benign(0.118) TCGA-2W-A8YY-01 1 116283450 116283450 C A CASQ2 Splice_Site p.X107_splice 0.41 TCGA-2W-A8YY-01 1 116383012 116383012 T C NHLH2 5'UTR 0.42 TCGA-2W-A8YY-01 1 116941625 116941625 G A ATP1A1 Silent p.P789P 0.48 TCGA-2W-A8YY-01 1 117120135 117120135 G A IGSF3 Silent p.F1148F 0.08 TCGA-2W-A8YY-01 1 117146547 117146547 C T IGSF3 Silent p.Q461Q 0.45 TCGA-2W-A8YY-01 1 11716037 11716037 C T FBXO44 Missense_Mutation p.R49C 0.37 deleterious(0.03) probably_damaging(0.916) TCGA-2W-A8YY-01 1 11716146 11716146 C T FBXO44 Missense_Mutation p.P85L 0.40 deleterious(0.01) benign(0.031) TCGA-2W-A8YY-01 1 11718849 11718849 C T FBXO44 Missense_Mutation p.S182L 0.39 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 117214382 117214382 C T IGSF3 5'Flank 0.38 TCGA-2W-A8YY-01 1 117487347 117487347 G A PTGFRN Silent p.P155P 0.42 TCGA-2W-A8YY-01 1 117529548 117529548 C T PTGFRN Missense_Mutation p.R867W 0.24 deleterious(0.01) unknown(0) TCGA-2W-A8YY-01 1 117552674 117552674 C T CD101 Silent p.Y82Y 0.44 TCGA-2W-A8YY-01 1 117556395 117556395 G A CD101 Silent p.V403V 0.33 TCGA-2W-A8YY-01 1 117631444 117631444 C T TTF2 Nonsense_Mutation p.R728* 0.28 TCGA-2W-A8YY-01 1 117631503 117631503 G A TTF2 Silent p.V747V 0.34 TCGA-2W-A8YY-01 1 117663668 117663668 A G TRIM45 Silent p.C52C 0.08 TCGA-2W-A8YY-01 1 11772483 11772483 C A DRAXIN Missense_Mutation p.P282T 0.28 deleterious(0) possibly_damaging(0.885) TCGA-2W-A8YY-01 1 117945061 117945061 G A MAN1A2 Missense_Mutation p.E186K 0.37 tolerated(0.1) possibly_damaging(0.51) TCGA-2W-A8YY-01 1 1179609 1179609 G A FAM132A Missense_Mutation p.A114V 0.40 tolerated(0.06) benign(0.003) TCGA-2W-A8YY-01 1 118168867 118168867 G T FAM46C 3'UTR 0.23 TCGA-2W-A8YY-01 1 118170957 118170957 G T FAM46C 3'UTR 0.38 TCGA-2W-A8YY-01 1 118412121 118412121 A C GDAP2 3'UTR 0.26 TCGA-2W-A8YY-01 1 118429224 118429224 G T GDAP2 Missense_Mutation p.P361H 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 118462938 118462938 T C GDAP2 Missense_Mutation p.T15A 0.37 tolerated(0.16) benign(0) TCGA-2W-A8YY-01 1 11848018 11848018 G A C1orf167 Nonsense_Mutation p.W1278* 0.22 TCGA-2W-A8YY-01 1 11848446 11848446 G A MTHFR 3'UTR 0.28 TCGA-2W-A8YY-01 1 11848688 11848688 C A MTHFR 3'UTR 0.40 TCGA-2W-A8YY-01 1 11848738 11848738 G A C1orf167 Missense_Mutation p.A1394T 0.29 deleterious(0.01) unknown(0) TCGA-2W-A8YY-01 1 11848763 11848763 C T C1orf167 Missense_Mutation p.A1402V 0.28 deleterious(0) unknown(0) TCGA-2W-A8YY-01 1 11849173 11849173 G A MTHFR 3'UTR 0.36 TCGA-2W-A8YY-01 1 118527345 118527345 G T SPAG17 Silent p.P1910P 0.12 TCGA-2W-A8YY-01 1 11854111 11854111 C T MTHFR Silent p.A461A 0.38 TCGA-2W-A8YY-01 1 11854134 11854134 G T MTHFR Missense_Mutation p.P454T 0.29 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 1 118583426 118583426 G T SPAG17 Silent p.I1031I 0.30 TCGA-2W-A8YY-01 1 118583454 118583454 T C SPAG17 Missense_Mutation p.Y1022C 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 118634279 118634279 G A SPAG17 Nonsense_Mutation p.R437* 0.34 TCGA-2W-A8YY-01 1 11887244 11887244 C T CLCN6 Missense_Mutation p.S269L 0.40 deleterious(0) probably_damaging(0.949) TCGA-2W-A8YY-01 1 1190143 1190143 C T UBE2J2 3'Flank 0.50 TCGA-2W-A8YY-01 1 12009832 12009832 G A PLOD1 Silent p.A57A 0.38 TCGA-2W-A8YY-01 1 12014920 12014920 C T PLOD1 Missense_Mutation p.R205C 0.39 deleterious(0) possibly_damaging(0.587) TCGA-2W-A8YY-01 1 120165523 120165523 C T ZNF697 Silent p.T481T 0.35 TCGA-2W-A8YY-01 1 120299897 120299897 C T HMGCS2 Missense_Mutation p.G339R 0.34 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 1 120311439 120311439 C T HMGCS2 Missense_Mutation p.R10H 0.48 tolerated_low_confidence(0.08) benign(0.004) TCGA-2W-A8YY-01 1 120455485 120455485 C T NOTCH2 3'UTR 0.52 TCGA-2W-A8YY-01 1 120459226 120459226 T C NOTCH2 Missense_Mutation p.D2040G 0.34 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 1 120462968 120462968 G A NOTCH2 Missense_Mutation p.P1788L 0.35 deleterious(0.01) benign(0.075) TCGA-2W-A8YY-01 1 120469133 120469133 G A NOTCH2 Missense_Mutation p.R1332C 0.48 deleterious(0.01) possibly_damaging(0.806) TCGA-2W-A8YY-01 1 120480041 120480041 G A NOTCH2 Missense_Mutation p.A1129V 0.45 tolerated(0.5) benign(0.004) TCGA-2W-A8YY-01 1 120491155 120491155 G A NOTCH2 Silent p.I878I 0.13 TCGA-2W-A8YY-01 1 12052746 12052746 C T MFN2 Missense_Mutation p.R104W 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 120547972 120547972 G A NOTCH2 Missense_Mutation p.T132I 0.52 tolerated(0.21) benign(0.004) TCGA-2W-A8YY-01 1 1222541 1222541 C T SCNN1D Missense_Mutation p.A391V 0.26 tolerated(0.49) benign(0.007) TCGA-2W-A8YY-01 1 1223170 1223170 G A SCNN1D Missense_Mutation p.S506N 0.33 deleterious(0) benign(0.428) TCGA-2W-A8YY-01 1 1225872 1225872 G A SCNN1D Missense_Mutation p.R599H 0.25 tolerated(0.08) benign(0.023) TCGA-2W-A8YY-01 1 12262054 12262054 A G TNFRSF1B Missense_Mutation p.T311A 0.32 tolerated(1) benign(0) TCGA-2W-A8YY-01 1 12336171 12336171 C T VPS13D Silent p.D842D 0.29 TCGA-2W-A8YY-01 1 12336228 12336228 A C VPS13D Silent p.R861R 0.42 TCGA-2W-A8YY-01 1 12337609 12337609 G T VPS13D Missense_Mutation p.A1322S 0.53 possibly_damaging(0.78) TCGA-2W-A8YY-01 1 12342879 12342879 C T VPS13D Missense_Mutation p.P1574S 0.47 possibly_damaging(0.611) TCGA-2W-A8YY-01 1 1250797 1250797 C A CPSF3L Missense_Mutation p.D190Y 0.38 deleterious(0) probably_damaging(0.975) TCGA-2W-A8YY-01 1 12639335 12639335 G T DHRS3 Missense_Mutation p.L149M 0.29 tolerated(0.78) benign(0.249) TCGA-2W-A8YY-01 1 1269249 1269249 C T TAS1R3 Missense_Mutation p.A655V 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 1 1269329 1269329 T C TAS1R3 Missense_Mutation p.W682R 0.48 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 1274774 1274774 G A DVL1 Missense_Mutation p.T367M 0.45 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 1 1274808 1274808 G A DVL1 Missense_Mutation p.R356W 0.34 deleterious(0) probably_damaging(0.942) TCGA-2W-A8YY-01 1 1277066 1277066 C T DVL1 Missense_Mutation p.E196K 0.36 deleterious(0.01) possibly_damaging(0.81) TCGA-2W-A8YY-01 1 12856103 12856103 C T PRAMEF1 Silent p.G461G 0.24 TCGA-2W-A8YY-01 1 12908160 12908160 T A HNRNPCL1 5'UTR 0.17 TCGA-2W-A8YY-01 1 12919659 12919659 G A PRAMEF2 Silent p.Q133Q 0.18 TCGA-2W-A8YY-01 1 1296775 1296775 T A MXRA8 5'Flank 0.36 TCGA-2W-A8YY-01 1 12979682 12979682 G A PRAMEF7 Missense_Mutation p.A292T 0.20 benign(0.048) TCGA-2W-A8YY-01 1 1323434 1323434 T C CCNL2 Missense_Mutation p.K340E 0.25 tolerated(0.06) benign(0.256) TCGA-2W-A8YY-01 1 1325928 1325928 G A CCNL2 Missense_Mutation p.R259C 0.40 deleterious(0.02) probably_damaging(0.995) TCGA-2W-A8YY-01 1 1326769 1326769 G A CCNL2 Intron 0.32 TCGA-2W-A8YY-01 1 1326873 1326873 C T CCNL2 Intron 0.32 TCGA-2W-A8YY-01 1 1334008 1334008 T C CCNL2 Missense_Mutation p.Y111C 0.36 deleterious(0) probably_damaging(0.975) TCGA-2W-A8YY-01 1 13839519 13839519 G A LRRC38 Silent p.C190C 0.26 TCGA-2W-A8YY-01 1 1386075 1386075 C T ATAD3C Silent p.D4D 0.41 TCGA-2W-A8YY-01 1 14104926 14104926 C T PRDM2 Silent p.D212D 0.44 TCGA-2W-A8YY-01 1 14105582 14105582 C T PRDM2 Missense_Mutation p.A431V 0.32 possibly_damaging(0.778) TCGA-2W-A8YY-01 1 14107221 14107221 C T PRDM2 Silent p.P977P 0.37 TCGA-2W-A8YY-01 1 14142960 14142960 C T PRDM2 Missense_Mutation p.A1692V 0.23 unknown(0) TCGA-2W-A8YY-01 1 14149785 14149785 C T PRDM2 3'UTR 0.09 TCGA-2W-A8YY-01 1 14151481 14151481 T G PRDM2 3'UTR 0.35 TCGA-2W-A8YY-01 1 142697721 142697721 G A RP11-417J8.6 RNA 0.10 TCGA-2W-A8YY-01 1 142713414 142713414 T C RP11-417J8.6 RNA 0.10 TCGA-2W-A8YY-01 1 143663736 143663736 C A RP6-206I17.1 RNA 0.55 TCGA-2W-A8YY-01 1 144520913 144520913 G A AL592284.1 3'UTR 0.08 TCGA-2W-A8YY-01 1 144816573 144816573 C T NBPF9 Missense_Mutation p.P235S 0.18 deleterious(0.05) probably_damaging(0.991) TCGA-2W-A8YY-01 1 144873931 144873931 T C PDE4DIP Missense_Mutation p.I1676V 0.35 tolerated(0.67) benign(0.005) TCGA-2W-A8YY-01 1 144873939 144873939 C T PDE4DIP Missense_Mutation p.S1673N 0.15 tolerated(0.06) benign(0.041) TCGA-2W-A8YY-01 1 144882746 144882746 C T PDE4DIP Silent p.E1091E 0.17 TCGA-2W-A8YY-01 1 144917533 144917533 C T PDE4DIP Missense_Mutation p.R524H 0.16 tolerated(0.07) benign(0.289) TCGA-2W-A8YY-01 1 144931490 144931490 C T PDE4DIP Intron 0.15 TCGA-2W-A8YY-01 1 144951972 144951972 C T PDE4DIP Intron 0.11 TCGA-2W-A8YY-01 1 145039703 145039704 - A RN7SKP88 5'Flank 0.10 TCGA-2W-A8YY-01 1 145074848 145074848 C T PDE4DIP 3'UTR 0.29 TCGA-2W-A8YY-01 1 145293199 145293199 C T NBPF10 5'Flank 0.10 TCGA-2W-A8YY-01 1 145296415 145296415 T C NBPF10 Silent p.L113L 0.21 TCGA-2W-A8YY-01 1 145417410 145417411 - A HFE2 3'UTR 0.31 TCGA-2W-A8YY-01 1 145457083 145457083 C A POLR3GL Nonsense_Mutation p.E160* 0.31 TCGA-2W-A8YY-01 1 145473585 145473585 C T ANKRD34A Missense_Mutation p.A86V 0.34 tolerated(0.53) benign(0.043) TCGA-2W-A8YY-01 1 145487462 145487462 T G LIX1L Missense_Mutation p.F151V 0.29 deleterious(0) possibly_damaging(0.542) TCGA-2W-A8YY-01 1 145498701 145498701 C T LIX1L Missense_Mutation p.R313C 0.40 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 1 145498728 145498728 C A LIX1L Missense_Mutation p.L322I 0.45 deleterious(0) benign(0.3) TCGA-2W-A8YY-01 1 145498819 145498819 T G LIX1L 3'UTR 0.25 TCGA-2W-A8YY-01 1 145525057 145525057 C T ITGA10 5'UTR 0.35 TCGA-2W-A8YY-01 1 145533539 145533539 C T ITGA10 Silent p.A474A 0.35 TCGA-2W-A8YY-01 1 145561860 145561860 G A ANKRD35 Silent p.P516P 0.29 TCGA-2W-A8YY-01 1 145578207 145578207 T C PIAS3 Missense_Mutation p.I57T 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 1 145578386 145578386 C A PIAS3 Missense_Mutation p.P117T 0.24 tolerated(0.12) benign(0.232) TCGA-2W-A8YY-01 1 145696724 145696724 G A CD160 Intron 0.50 TCGA-2W-A8YY-01 1 145756482 145756482 C A PDZK1 Missense_Mutation p.L287M 0.42 tolerated(0.16) possibly_damaging(0.866) TCGA-2W-A8YY-01 1 145931975 145931975 G T PDZK1P1 RNA 0.59 TCGA-2W-A8YY-01 1 1459332 1459332 G A ATAD3A Silent p.T407T 0.29 TCGA-2W-A8YY-01 1 1461877 1461877 G A ATAD3A Missense_Mutation p.A483T 0.40 tolerated(0.06) benign(0.211) TCGA-2W-A8YY-01 1 146626925 146626925 C A PRKAB2 3'UTR 0.42 TCGA-2W-A8YY-01 1 146639497 146639497 C A PRKAB2 Nonsense_Mutation p.E58* 0.45 TCGA-2W-A8YY-01 1 146643615 146643615 C T PRKAB2 Missense_Mutation p.V37M 0.37 tolerated(1) benign(0.022) TCGA-2W-A8YY-01 1 146656022 146656022 C A FMO5 3'Flank 0.34 TCGA-2W-A8YY-01 1 146737590 146737590 G A CHD1L Splice_Site p.X247_splice 0.21 TCGA-2W-A8YY-01 1 146742597 146742597 C T CHD1L Missense_Mutation p.H364Y 0.36 deleterious(0.05) probably_damaging(0.998) TCGA-2W-A8YY-01 1 147086368 147086368 G A BCL9 Silent p.K171K 0.42 TCGA-2W-A8YY-01 1 147097970 147097970 G A BCL9 3'UTR 0.42 TCGA-2W-A8YY-01 1 147381379 147381379 G A GJA8 Missense_Mutation p.V433I 0.54 tolerated(0.51) unknown(0) TCGA-2W-A8YY-01 1 14925524 14925524 C T KAZN Missense_Mutation p.R11C 0.42 deleterious(0) possibly_damaging(0.876) TCGA-2W-A8YY-01 1 149857651 149857651 C T HIST2H2BE 3'UTR 0.36 TCGA-2W-A8YY-01 1 149875278 149875278 C T SV2A 3'UTR 0.29 TCGA-2W-A8YY-01 1 149877284 149877284 C A SV2A Intron 0.41 TCGA-2W-A8YY-01 1 149884905 149884905 C T SV2A Missense_Mutation p.R163H 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-2W-A8YY-01 1 149904211 149904211 C T MTMR11 Missense_Mutation p.A333T 0.35 tolerated(0.4) benign(0.009) TCGA-2W-A8YY-01 1 149906106 149906106 C T MTMR11 Missense_Mutation p.E221K 0.34 deleterious(0.01) probably_damaging(0.957) TCGA-2W-A8YY-01 1 149907203 149907203 C T MTMR11 Missense_Mutation p.R105Q 0.53 tolerated(0.19) benign(0.023) TCGA-2W-A8YY-01 1 149915840 149915840 G A OTUD7B Silent p.N816N 0.34 TCGA-2W-A8YY-01 1 149982465 149982465 C T OTUD7B 5'UTR 0.38 TCGA-2W-A8YY-01 1 150049843 150049843 C T VPS45 Missense_Mutation p.P225S 0.20 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 1 150054906 150054906 T G VPS45 Missense_Mutation p.L348R 0.39 deleterious(0) probably_damaging(0.961) TCGA-2W-A8YY-01 1 150065705 150065705 A G VPS45 Missense_Mutation p.N485S 0.41 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 1 150121791 150121791 C T PLEKHO1 5'Flank 0.54 TCGA-2W-A8YY-01 1 150131488 150131488 C T PLEKHO1 Nonsense_Mutation p.R334* 0.44 TCGA-2W-A8YY-01 1 150190863 150190863 C T ANP32E 3'UTR 0.34 TCGA-2W-A8YY-01 1 150232553 150232553 C T CA14 Silent p.H21H 0.46 TCGA-2W-A8YY-01 1 150241173 150241173 G A APH1A Missense_Mutation p.A13V 0.28 deleterious(0) possibly_damaging(0.852) TCGA-2W-A8YY-01 1 150241227 150241228 - G C1orf54 Intron 0.20 TCGA-2W-A8YY-01 1 150297542 150297542 G A PRPF3 Missense_Mutation p.A48T 0.10 tolerated(0.59) benign(0.016) TCGA-2W-A8YY-01 1 150300846 150300846 G A PRPF3 Missense_Mutation p.R115H 0.36 deleterious(0.04) benign(0.002) TCGA-2W-A8YY-01 1 150527944 150527944 G A ADAMTSL4 Missense_Mutation p.R425H 0.45 deleterious(0.02) probably_damaging(0.987) TCGA-2W-A8YY-01 1 150532583 150532583 G A ADAMTSL4 Missense_Mutation p.A1046T 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 150795690 150795690 G A ARNT Silent p.I458I 0.28 TCGA-2W-A8YY-01 1 150957101 150957101 G A ANXA9 Missense_Mutation p.A141T 0.43 deleterious(0.03) probably_damaging(0.92) TCGA-2W-A8YY-01 1 151016202 151016202 C T BNIPL Missense_Mutation p.R284W 0.35 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 151028177 151028177 G A CDC42SE1 Silent p.C10C 0.47 TCGA-2W-A8YY-01 1 151131454 151131454 T C TNFAIP8L2 Missense_Mutation p.L94P 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 1 151149257 151149257 G A VPS72 Missense_Mutation p.R331C 0.60 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 1 151239742 151239742 C T PSMD4 Nonsense_Mutation p.R353* 0.30 TCGA-2W-A8YY-01 1 151266594 151266594 G A PI4KB Silent p.G735G 0.31 TCGA-2W-A8YY-01 1 151338767 151338767 C T SELENBP1 Missense_Mutation p.R276H 0.38 tolerated(0.49) benign(0.021) TCGA-2W-A8YY-01 1 151340748 151340748 G T SELENBP1 Silent p.L136L 0.29 TCGA-2W-A8YY-01 1 151372581 151372581 C T PSMB4 Nonsense_Mutation p.R89* 0.32 TCGA-2W-A8YY-01 1 151377083 151377083 G A POGZ 3'UTR 0.28 TCGA-2W-A8YY-01 1 151378898 151378898 C A POGZ Missense_Mutation p.K871N 0.43 deleterious(0.03) benign(0.231) TCGA-2W-A8YY-01 1 151397480 151397480 C T POGZ Missense_Mutation p.R379Q 0.42 deleterious(0.04) benign(0.012) TCGA-2W-A8YY-01 1 151491117 151491117 G A CGN Missense_Mutation p.R41H 0.47 tolerated(0.54) possibly_damaging(0.884) TCGA-2W-A8YY-01 1 151491789 151491789 G A CGN Missense_Mutation p.R265H 0.31 tolerated(0.2) benign(0.006) TCGA-2W-A8YY-01 1 151641057 151641057 A C SNX27 Missense_Mutation p.E365D 0.34 tolerated(0.57) benign(0.049) TCGA-2W-A8YY-01 1 151670048 151670048 C T SNX27 3'UTR 0.33 TCGA-2W-A8YY-01 1 151677576 151677576 C T CELF3 Missense_Mutation p.G447S 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 151734923 151734923 G A MRPL9 Nonsense_Mutation p.R122* 0.27 TCGA-2W-A8YY-01 1 151735857 151735857 T C MRPL9 Silent p.R33R 0.34 TCGA-2W-A8YY-01 1 151742675 151742675 A C OAZ3 Missense_Mutation p.E124D 0.08 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 1 151747203 151747203 G A TDRKH Missense_Mutation p.S539F 0.33 deleterious(0) possibly_damaging(0.775) TCGA-2W-A8YY-01 1 151774178 151774178 C T LINGO4 Missense_Mutation p.A335T 0.27 tolerated(0.72) benign(0.027) TCGA-2W-A8YY-01 1 151774384 151774384 G A LINGO4 Missense_Mutation p.S266L 0.13 deleterious(0.01) benign(0.002) TCGA-2W-A8YY-01 1 151787773 151787773 C T RORC Missense_Mutation p.G143R 0.19 tolerated(0.37) benign(0.002) TCGA-2W-A8YY-01 1 151811381 151811381 G A C2CD4D Missense_Mutation p.R29C 0.32 deleterious(0.02) possibly_damaging(0.719) TCGA-2W-A8YY-01 1 151811680 151811680 C T C2CD4D 5'UTR 0.35 TCGA-2W-A8YY-01 1 151826159 151826159 G T THEM5 5'UTR 0.25 TCGA-2W-A8YY-01 1 152081396 152081396 G A TCHH Missense_Mutation p.R1433C 0.45 unknown(0) TCGA-2W-A8YY-01 1 152081814 152081814 G A TCHH Silent p.F1293F 0.17 TCGA-2W-A8YY-01 1 152082527 152082527 G T TCHH Missense_Mutation p.L1056M 0.16 unknown(0) TCGA-2W-A8YY-01 1 152084055 152084055 G A TCHH Silent p.R546R 0.39 TCGA-2W-A8YY-01 1 152084894 152084894 G A TCHH Missense_Mutation p.R267W 0.37 unknown(0) TCGA-2W-A8YY-01 1 152187520 152187520 G T HRNR Silent p.S2195S 0.11 TCGA-2W-A8YY-01 1 152187647 152187647 G A HRNR Missense_Mutation p.S2153L 0.06 unknown(0) TCGA-2W-A8YY-01 1 152191195 152191195 G A HRNR Silent p.S970S 0.45 TCGA-2W-A8YY-01 1 152191773 152191773 G A HRNR Missense_Mutation p.R778C 0.43 unknown(0) TCGA-2W-A8YY-01 1 152276824 152276824 G A FLG Missense_Mutation p.A3513V 0.28 unknown(0) TCGA-2W-A8YY-01 1 152278721 152278722 - T FLG Frame_Shift_Ins p.S2881Ifs*16 0.19 TCGA-2W-A8YY-01 1 152279068 152279068 G A FLG Missense_Mutation p.S2765F 0.24 possibly_damaging(0.546) TCGA-2W-A8YY-01 1 152281922 152281922 G A FLG Missense_Mutation p.R1814C 0.32 possibly_damaging(0.689) TCGA-2W-A8YY-01 1 152285184 152285184 C T FLG Silent p.G726G 0.37 TCGA-2W-A8YY-01 1 152285562 152285562 G T FLG Missense_Mutation p.H600Q 0.36 probably_damaging(0.932) TCGA-2W-A8YY-01 1 152328347 152328347 T C FLG2 Missense_Mutation p.T639A 0.35 unknown(0) TCGA-2W-A8YY-01 1 152484333 152484333 C A LCE5A Missense_Mutation p.S108Y 0.45 tolerated_low_confidence(1) unknown(0) TCGA-2W-A8YY-01 1 152538349 152538349 G A LCE3E 3'UTR 0.11 TCGA-2W-A8YY-01 1 152692130 152692130 A G C1orf68 Missense_Mutation p.T45A 0.40 tolerated(0.39) benign(0.002) TCGA-2W-A8YY-01 1 152692253 152692253 C T C1orf68 Nonsense_Mutation p.Q86* 0.42 TCGA-2W-A8YY-01 1 152733572 152733572 G A KPRP Missense_Mutation p.G503D 0.30 tolerated_low_confidence(0.08) probably_damaging(0.982) TCGA-2W-A8YY-01 1 152734043 152734043 G A KPRP 3'UTR 0.41 TCGA-2W-A8YY-01 1 152777820 152777820 A G LCE1C Silent p.S45S 0.42 TCGA-2W-A8YY-01 1 152884142 152884142 C T IVL 3'UTR 0.26 TCGA-2W-A8YY-01 1 152975617 152975617 T C SPRR3 Missense_Mutation p.C41R 0.08 tolerated(0.05) possibly_damaging(0.5) TCGA-2W-A8YY-01 1 153085012 153085012 C T SPRR2F Silent p.K66K 0.12 TCGA-2W-A8YY-01 1 153234432 153234432 C T LOR 3'UTR 0.40 TCGA-2W-A8YY-01 1 153617730 153617730 C T CHTOP Silent p.P244P 0.49 TCGA-2W-A8YY-01 1 153636884 153636884 G A ILF2 Missense_Mutation p.A215V 0.36 deleterious(0.04) possibly_damaging(0.513) TCGA-2W-A8YY-01 1 153654211 153654211 G A NPR1 Missense_Mutation p.G356E 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 153659558 153659558 G A NPR1 Missense_Mutation p.V644I 0.49 tolerated(0.06) possibly_damaging(0.787) TCGA-2W-A8YY-01 1 153730145 153730145 A G INTS3 Missense_Mutation p.Y352C 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 153732865 153732865 G A INTS3 Missense_Mutation p.R439H 0.41 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 1 153745527 153745527 C T INTS3 Silent p.A1007A 0.44 TCGA-2W-A8YY-01 1 153781131 153781131 G A GATAD2B 3'UTR 0.42 TCGA-2W-A8YY-01 1 153782580 153782580 G A GATAD2B 3'UTR 0.48 TCGA-2W-A8YY-01 1 153916735 153916735 C T DENND4B Missense_Mutation p.R39H 0.32 deleterious(0.01) possibly_damaging(0.8) TCGA-2W-A8YY-01 1 153920635 153920635 G T CRTC2 Missense_Mutation p.L678M 0.38 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 153920786 153920786 G T CRTC2 Missense_Mutation p.F627L 0.38 tolerated(1) probably_damaging(0.977) TCGA-2W-A8YY-01 1 153925790 153925790 T C CRTC2 Missense_Mutation p.T187A 0.40 tolerated(0.83) benign(0.089) TCGA-2W-A8YY-01 1 153999993 153999993 G A NUP210L Silent p.L1312L 0.45 TCGA-2W-A8YY-01 1 154029405 154029405 G A NUP210L Silent p.D1042D 0.32 TCGA-2W-A8YY-01 1 154090343 154090343 C A NUP210L Missense_Mutation p.S493I 0.36 deleterious(0) probably_damaging(0.955) TCGA-2W-A8YY-01 1 154184757 154184757 T C C1orf43 Intron 0.33 TCGA-2W-A8YY-01 1 154309885 154309885 A G ATP8B2 Missense_Mutation p.H333R 0.39 tolerated(0.44) benign(0) TCGA-2W-A8YY-01 1 154310027 154310027 G A ATP8B2 Intron 0.34 TCGA-2W-A8YY-01 1 154310183 154310183 C T ATP8B2 Intron 0.39 TCGA-2W-A8YY-01 1 154321479 154321479 C T ATP8B2 Missense_Mutation p.A1186V 0.17 tolerated(0.13) unknown(0) TCGA-2W-A8YY-01 1 154458462 154458462 G A SHE Nonsense_Mutation p.R420* 0.28 TCGA-2W-A8YY-01 1 154474139 154474139 T G SHE Missense_Mutation p.N122H 0.25 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 1 154522586 154522586 G T UBE2Q1 3'UTR 0.37 TCGA-2W-A8YY-01 1 154523465 154523465 T A UBE2Q1 Missense_Mutation p.T396S 0.38 tolerated(0.17) benign(0.004) TCGA-2W-A8YY-01 1 154525613 154525613 C A UBE2Q1 Missense_Mutation p.E208D 0.32 tolerated(0.13) benign(0.272) TCGA-2W-A8YY-01 1 154573520 154573520 G T ADAR Missense_Mutation p.P533H 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 154930254 154930254 C A PYGO2 3'UTR 0.45 TCGA-2W-A8YY-01 1 154931574 154931574 C T PYGO2 Missense_Mutation p.G301D 0.29 deleterious(0.02) benign(0.043) TCGA-2W-A8YY-01 1 154934799 154934799 G T SHC1 3'UTR 0.46 TCGA-2W-A8YY-01 1 154999117 154999117 A C DCST2 Missense_Mutation p.F473V 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 155001811 155001811 G A DCST2 Nonsense_Mutation p.R414* 0.36 TCGA-2W-A8YY-01 1 155005648 155005648 C T DCST2 Missense_Mutation p.E121K 0.42 tolerated(0.36) benign(0.004) TCGA-2W-A8YY-01 1 155018626 155018626 G A DCST1 Missense_Mutation p.R433H 0.44 tolerated(0.05) benign(0.164) TCGA-2W-A8YY-01 1 155020610 155020610 C T DCST1 Silent p.A611A 0.46 TCGA-2W-A8YY-01 1 155103948 155103948 G T EFNA1 Nonsense_Mutation p.E76* 0.16 TCGA-2W-A8YY-01 1 155104004 155104004 G A EFNA1 Silent p.R94R 0.61 TCGA-2W-A8YY-01 1 155154518 155154518 C T TRIM46 Silent p.Y593Y 0.44 TCGA-2W-A8YY-01 1 155167708 155167708 G A THBS3 Silent p.I755I 0.52 TCGA-2W-A8YY-01 1 155175066 155175066 C T THBS3 Missense_Mutation p.V110M 0.39 deleterious(0) possibly_damaging(0.908) TCGA-2W-A8YY-01 1 155182299 155182299 C T MTX1 Missense_Mutation p.R299W 0.29 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 1 155186315 155186315 A G MTX1 3'Flank 0.44 TCGA-2W-A8YY-01 1 155217174 155217174 C T FAM189B 3'UTR 0.61 TCGA-2W-A8YY-01 1 155217211 155217211 C T FAM189B 3'UTR 0.49 TCGA-2W-A8YY-01 1 155220482 155220482 G A FAM189B Silent p.R365R 0.33 TCGA-2W-A8YY-01 1 155220886 155220886 C T FAM189B Missense_Mutation p.V322M 0.33 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 1 155290668 155290668 G A RUSC1 5'Flank 0.41 TCGA-2W-A8YY-01 1 155291065 155291065 G A RUSC1 Intron 0.41 TCGA-2W-A8YY-01 1 155300386 155300386 G A RUSC1 3'UTR 0.44 TCGA-2W-A8YY-01 1 155348300 155348300 G A ASH1L Missense_Mutation p.R2073C 0.41 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-2W-A8YY-01 1 155448287 155448287 A C ASH1L Silent p.T1458T 0.27 TCGA-2W-A8YY-01 1 155451750 155451750 G A ASH1L Missense_Mutation p.S304F 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.468) TCGA-2W-A8YY-01 1 155491162 155491162 C T ASH1L Missense_Mutation p.R50H 0.39 tolerated_low_confidence(0.12) benign(0.002) TCGA-2W-A8YY-01 1 155582702 155582702 G A MSTO1 Missense_Mutation p.R345H 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 155629650 155629650 A G YY1AP1 Missense_Mutation p.V822A 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-2W-A8YY-01 1 155734999 155734999 A G GON4L Missense_Mutation p.V1422A 0.23 tolerated_low_confidence(0.79) benign(0.001) TCGA-2W-A8YY-01 1 155764843 155764843 G A GON4L Missense_Mutation p.T582I 0.12 deleterious(0) possibly_damaging(0.702) TCGA-2W-A8YY-01 1 155883756 155883756 G A KIAA0907 3'UTR 0.56 TCGA-2W-A8YY-01 1 155917226 155917226 G A ARHGEF2 3'UTR 0.33 TCGA-2W-A8YY-01 1 156006746 156006746 G T UBQLN4 3'UTR 0.44 TCGA-2W-A8YY-01 1 156013939 156013939 G A UBQLN4 Nonsense_Mutation p.R326* 0.49 TCGA-2W-A8YY-01 1 156038179 156038179 G A RAB25 Missense_Mutation p.V120I 0.28 tolerated_low_confidence(1) benign(0.026) TCGA-2W-A8YY-01 1 156046206 156046206 G A MEX3A 3'UTR 0.34 TCGA-2W-A8YY-01 1 156047384 156047384 G A MEX3A Nonsense_Mutation p.R182* 0.44 TCGA-2W-A8YY-01 1 1560526 1560526 G T MIB2 Missense_Mutation p.A343S 0.30 tolerated(0.71) benign(0.023) TCGA-2W-A8YY-01 1 156108331 156108331 G A LMNA Missense_Mutation p.R584H 0.33 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-2W-A8YY-01 1 156145401 156145401 T C SEMA4A Silent p.S549S 0.31 TCGA-2W-A8YY-01 1 156169763 156169763 G A SLC25A44 Missense_Mutation p.R42H 0.45 deleterious(0.02) benign(0.271) TCGA-2W-A8YY-01 1 156170065 156170065 G T SLC25A44 Missense_Mutation p.G143C 0.33 deleterious(0) probably_damaging(0.975) TCGA-2W-A8YY-01 1 156180795 156180795 G A SLC25A44 3'UTR 0.25 TCGA-2W-A8YY-01 1 156236111 156236111 G T SMG5 Missense_Mutation p.P439H 0.53 tolerated(0.09) benign(0.305) TCGA-2W-A8YY-01 1 156236369 156236369 G A SMG5 Silent p.G406G 0.40 TCGA-2W-A8YY-01 1 1562716 1562716 C A MIB2 Missense_Mutation p.A587D 0.21 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 1 156377223 156377223 C A C1orf61 Intron 0.32 TCGA-2W-A8YY-01 1 156434246 156434246 G A MEF2D 3'UTR 0.44 TCGA-2W-A8YY-01 1 156504379 156504379 G A IQGAP3 Silent p.H1218H 0.43 TCGA-2W-A8YY-01 1 156552075 156552075 G A TTC24 Silent p.P253P 0.41 TCGA-2W-A8YY-01 1 156552863 156552863 C T TTC24 Missense_Mutation p.R314W 0.42 deleterious(0.04) benign(0.14) TCGA-2W-A8YY-01 1 156553191 156553191 G T TTC24 Silent p.G367G 0.50 TCGA-2W-A8YY-01 1 15655705 15655705 C A FHAD1 Intron 0.35 TCGA-2W-A8YY-01 1 156562457 156562457 G A APOA1BP Missense_Mutation p.A171T 0.61 tolerated(0.61) benign(0.006) TCGA-2W-A8YY-01 1 156563422 156563422 A C APOA1BP Intron 0.35 TCGA-2W-A8YY-01 1 156568247 156568247 G A GPATCH4 Missense_Mutation p.A45V 0.38 deleterious(0) possibly_damaging(0.817) TCGA-2W-A8YY-01 1 156618451 156618451 G A BCAN Silent p.T287T 0.25 TCGA-2W-A8YY-01 1 156627988 156627988 G T BCAN Missense_Mutation p.V788L 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 1 156640823 156640823 G T NES Missense_Mutation p.L1053I 0.38 deleterious(0.05) benign(0.209) TCGA-2W-A8YY-01 1 156641687 156641687 G A NES Nonsense_Mutation p.R765* 0.33 TCGA-2W-A8YY-01 1 156641710 156641710 G A NES Missense_Mutation p.T757I 0.10 tolerated(0.25) benign(0.002) TCGA-2W-A8YY-01 1 156696806 156696806 G A ISG20L2 Silent p.D213D 0.11 TCGA-2W-A8YY-01 1 156707446 156707446 G A MRPL24 Missense_Mutation p.T169M 0.12 tolerated(0.27) benign(0.018) TCGA-2W-A8YY-01 1 156707525 156707525 G A MRPL24 Missense_Mutation p.R143W 0.31 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 1 156712558 156712558 G A HDGF 3'Flank 0.39 TCGA-2W-A8YY-01 1 156843501 156843501 G A NTRK1 Silent p.P309P 0.39 TCGA-2W-A8YY-01 1 156875127 156875127 G A PEAR1 Missense_Mutation p.R73Q 0.32 deleterious(0.01) possibly_damaging(0.768) TCGA-2W-A8YY-01 1 156890619 156890619 G A LRRC71 Silent p.P8P 0.52 TCGA-2W-A8YY-01 1 156890694 156890694 G A LRRC71 Silent p.A33A 0.31 TCGA-2W-A8YY-01 1 156909590 156909590 G A ARHGEF11 Silent p.S1282S 0.49 TCGA-2W-A8YY-01 1 156914894 156914894 G A ARHGEF11 Missense_Mutation p.R970C 0.49 deleterious(0.01) benign(0.015) TCGA-2W-A8YY-01 1 157103827 157103827 C T ETV3 Intron 0.37 TCGA-2W-A8YY-01 1 157104016 157104016 G A ETV3 Silent p.Y96Y 0.43 TCGA-2W-A8YY-01 1 15714587 15714587 C T FHAD1 Silent p.I1429I 0.44 TCGA-2W-A8YY-01 1 1571788 1571788 A G CDK11B Missense_Mutation p.V661A 0.29 unknown(0) TCGA-2W-A8YY-01 1 15723866 15723866 C T FHAD1 Missense_Mutation p.S634F 0.30 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-2W-A8YY-01 1 157494216 157494216 C T FCRL5 Missense_Mutation p.V698I 0.31 tolerated(0.09) possibly_damaging(0.861) TCGA-2W-A8YY-01 1 157545235 157545235 G A FCRL4 3'UTR 0.33 TCGA-2W-A8YY-01 1 157666136 157666136 G A FCRL3 Intron 0.46 TCGA-2W-A8YY-01 1 15769995 15769995 C T CTRC Silent p.D146D 0.43 TCGA-2W-A8YY-01 1 15772173 15772173 C T CTRC Missense_Mutation p.R241W 0.32 tolerated(0.06) benign(0.003) TCGA-2W-A8YY-01 1 157737485 157737485 T C FCRL2 Intron 0.42 TCGA-2W-A8YY-01 1 157737561 157737561 C T FCRL2 Intron 0.55 TCGA-2W-A8YY-01 1 157899369 157899369 G A RP11-451O13.1 RNA 0.46 TCGA-2W-A8YY-01 1 158063453 158063453 G A KIRREL Silent p.V540V 0.45 TCGA-2W-A8YY-01 1 158064144 158064144 C T KIRREL Silent p.C587C 0.48 TCGA-2W-A8YY-01 1 158064804 158064804 C T KIRREL Missense_Mutation p.A723V 0.43 tolerated(0.28) benign(0.022) TCGA-2W-A8YY-01 1 15807675 15807675 C A CELA2B Missense_Mutation p.A71D 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 158153768 158153768 T C CD1D Missense_Mutation p.L310P 0.39 tolerated(0.07) possibly_damaging(0.897) TCGA-2W-A8YY-01 1 15817940 15817940 C A CASP9 3'Flank 0.28 TCGA-2W-A8YY-01 1 158224506 158224506 G A CD1A Missense_Mutation p.G16D 0.32 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 1 158225049 158225049 G T CD1A Missense_Mutation p.E78D 0.37 deleterious(0.05) benign(0.006) TCGA-2W-A8YY-01 1 158324221 158324221 G A CD1E Missense_Mutation p.R38H 0.40 tolerated(1) benign(0.01) TCGA-2W-A8YY-01 1 158532812 158532812 C T OR6P1 Missense_Mutation p.A195T 0.29 tolerated(0.17) benign(0.092) TCGA-2W-A8YY-01 1 158548917 158548917 G A OR10X1 Missense_Mutation p.A258V 0.22 tolerated(0.08) benign(0.248) TCGA-2W-A8YY-01 1 158609683 158609683 C T SPTA1 Missense_Mutation p.D1618N 0.42 deleterious(0) probably_damaging(0.937) TCGA-2W-A8YY-01 1 158612286 158612286 C T SPTA1 Missense_Mutation p.R1551Q 0.09 tolerated(0.07) benign(0.161) TCGA-2W-A8YY-01 1 158735577 158735577 T A OR6N1 Missense_Mutation p.E299V 0.35 tolerated(0.05) benign(0.13) TCGA-2W-A8YY-01 1 158736147 158736147 G A OR6N1 Missense_Mutation p.A109V 0.38 tolerated(0.81) benign(0.431) TCGA-2W-A8YY-01 1 158747100 158747100 G A OR6N2 Missense_Mutation p.A109V 0.42 tolerated(0.5) benign(0.302) TCGA-2W-A8YY-01 1 158813902 158813902 C T MNDA Missense_Mutation p.S187L 0.32 tolerated(0.38) benign(0.101) TCGA-2W-A8YY-01 1 15898093 15898093 C T DNAJC16 3'UTR 0.30 TCGA-2W-A8YY-01 1 158985756 158985756 A G IFI16 Silent p.A120A 0.52 TCGA-2W-A8YY-01 1 159161773 159161773 G A CADM3 Missense_Mutation p.V80M 0.42 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 159176199 159176199 G T DARC Nonsense_Mutation p.G326* 0.47 TCGA-2W-A8YY-01 1 15944204 15944204 C T DDI2 Silent p.S13S 0.34 TCGA-2W-A8YY-01 1 159779419 159779419 G C FCRL6 Missense_Mutation p.A278P 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 1 159807800 159807801 - T C1orf204 Frame_Shift_Ins p.L206Tfs*7 0.23 TCGA-2W-A8YY-01 1 159846371 159846371 G A CCDC19 Missense_Mutation p.R443W 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 159898159 159898159 G A IGSF9 Missense_Mutation p.R1007W 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 159904035 159904035 G T IGSF9 Missense_Mutation p.P350H 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 159922147 159922147 C T SLAMF9 Missense_Mutation p.R190K 0.57 tolerated(0.27) benign(0.249) TCGA-2W-A8YY-01 1 160012216 160012216 C T KCNJ10 Missense_Mutation p.R36H 0.39 tolerated(1) benign(0.015) TCGA-2W-A8YY-01 1 160053847 160053847 G A KCNJ9 Silent p.S9S 0.38 TCGA-2W-A8YY-01 1 160064840 160064840 G T IGSF8 Silent p.S87S 0.37 TCGA-2W-A8YY-01 1 160277017 160277017 G A COPA Missense_Mutation p.S413F 0.52 deleterious(0) benign(0.059) TCGA-2W-A8YY-01 1 160321892 160321892 G A NCSTN Missense_Mutation p.A298T 0.15 tolerated(0.54) benign(0.009) TCGA-2W-A8YY-01 1 160385959 160385959 G A VANGL2 Missense_Mutation p.R60Q 0.34 tolerated(0.13) possibly_damaging(0.778) TCGA-2W-A8YY-01 1 160395250 160395250 T C VANGL2 3'UTR 0.59 TCGA-2W-A8YY-01 1 16051961 16051961 G A PLEKHM2 Missense_Mutation p.V288M 0.42 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-2W-A8YY-01 1 16053880 16053880 G A PLEKHM2 Missense_Mutation p.R438Q 0.34 deleterious_low_confidence(0.03) benign(0.133) TCGA-2W-A8YY-01 1 16055178 16055178 C T PLEKHM2 Missense_Mutation p.P646S 0.41 deleterious(0.04) probably_damaging(0.95) TCGA-2W-A8YY-01 1 16074095 16074095 G A TMEM82 Missense_Mutation p.A334T 0.29 tolerated(0.25) unknown(0) TCGA-2W-A8YY-01 1 160783523 160783523 G T LY9 Missense_Mutation p.E184D 0.10 tolerated(0.32) possibly_damaging(0.796) TCGA-2W-A8YY-01 1 160788111 160788111 T G LY9 Splice_Site p.X482_splice 0.21 TCGA-2W-A8YY-01 1 160851920 160851920 C T ITLN1 Missense_Mutation p.G78S 0.22 deleterious(0.04) possibly_damaging(0.828) TCGA-2W-A8YY-01 1 161022147 161022147 T C ARHGAP30 Missense_Mutation p.K316R 0.19 deleterious(0.01) benign(0.347) TCGA-2W-A8YY-01 1 161042643 161042643 C T PVRL4 Silent p.T447T 0.32 TCGA-2W-A8YY-01 1 161049378 161049378 A G PVRL4 Splice_Site p.X147_splice 0.35 TCGA-2W-A8YY-01 1 161132171 161132171 C A USP21 Missense_Mutation p.L258I 0.09 tolerated(0.07) probably_damaging(0.963) TCGA-2W-A8YY-01 1 161132817 161132817 C T USP21 Silent p.P334P 0.10 TCGA-2W-A8YY-01 1 161138793 161138793 A C PPOX Silent p.P209P 0.42 TCGA-2W-A8YY-01 1 161140922 161140922 C T PPOX Missense_Mutation p.R464C 0.28 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 1 161146837 161146837 G A B4GALT3 Intron 0.41 TCGA-2W-A8YY-01 1 161161237 161161237 G T ADAMTS4 Silent p.S735S 0.65 TCGA-2W-A8YY-01 1 161166529 161166529 G A ADAMTS4 Missense_Mutation p.R259C 0.29 deleterious(0.01) benign(0.015) TCGA-2W-A8YY-01 1 161172000 161172000 C T NDUFS2 5'UTR 0.22 TCGA-2W-A8YY-01 1 161198596 161198596 T C TOMM40L Missense_Mutation p.M259T 0.17 deleterious(0) possibly_damaging(0.52) TCGA-2W-A8YY-01 1 161199442 161199442 G A TOMM40L 3'UTR 0.52 TCGA-2W-A8YY-01 1 161202718 161202718 T C NR1I3 Missense_Mutation p.I143V 0.27 tolerated(0.65) benign(0) TCGA-2W-A8YY-01 1 161203022 161203022 C T NR1I3 Silent p.R115R 0.13 TCGA-2W-A8YY-01 1 161275030 161275030 G A MPZ 3'UTR 0.40 TCGA-2W-A8YY-01 1 161279717 161279717 C T MPZ 5'UTR 0.35 TCGA-2W-A8YY-01 1 161332409 161332409 C T SDHC 3'UTR 0.21 TCGA-2W-A8YY-01 1 161332448 161332448 T - SDHC 3'UTR 0.12 TCGA-2W-A8YY-01 1 161496177 161496177 C T HSPA6 Missense_Mutation p.R577W 0.36 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-2W-A8YY-01 1 161518213 161518213 A G FCGR3A Missense_Mutation p.I142T 0.15 tolerated(0.4) benign(0.001) TCGA-2W-A8YY-01 1 161518271 161518271 A G FCGR3A Missense_Mutation p.Y123H 0.16 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 161761277 161761277 C T ATF6 Missense_Mutation p.A145V 0.37 tolerated(0.61) benign(0.001) TCGA-2W-A8YY-01 1 161953807 161953807 G A OLFML2B Silent p.D637D 0.46 TCGA-2W-A8YY-01 1 161970059 161970059 G A OLFML2B Nonsense_Mutation p.R265* 0.16 TCGA-2W-A8YY-01 1 162346489 162346489 G A C1orf111 Missense_Mutation p.T31I 0.38 deleterious(0) possibly_damaging(0.687) TCGA-2W-A8YY-01 1 162351571 162351571 G A C1orf226 Intron 0.52 TCGA-2W-A8YY-01 1 162353174 162353174 G A C1orf226 Missense_Mutation p.A217T 0.50 tolerated(0.57) benign(0.012) TCGA-2W-A8YY-01 1 162354491 162354491 C T C1orf226 3'Flank 0.63 TCGA-2W-A8YY-01 1 16247466 16247466 G A SPEN Silent p.G579G 0.36 TCGA-2W-A8YY-01 1 162492709 162492709 A T UHMK1 3'UTR 0.44 TCGA-2W-A8YY-01 1 16256144 16256144 C T SPEN Missense_Mutation p.R1137C 0.28 possibly_damaging(0.847) TCGA-2W-A8YY-01 1 16261878 16261878 C T SPEN Missense_Mutation p.T3048M 0.53 possibly_damaging(0.684) TCGA-2W-A8YY-01 1 16265793 16265793 T C SPEN Silent p.P3622P 0.44 TCGA-2W-A8YY-01 1 16269947 16269947 G A ZBTB17 Silent p.H548H 0.08 TCGA-2W-A8YY-01 1 162725037 162725037 C T DDR2 Missense_Mutation p.T170I 0.47 deleterious(0.03) probably_damaging(0.94) TCGA-2W-A8YY-01 1 162745624 162745624 G A DDR2 Missense_Mutation p.R680H 0.22 tolerated(0.06) benign(0.013) TCGA-2W-A8YY-01 1 16274791 16274791 G A ZBTB17 Missense_Mutation p.A67V 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.604) TCGA-2W-A8YY-01 1 162769599 162769599 C T HSD17B7 Missense_Mutation p.R172C 0.38 deleterious(0.03) benign(0.056) TCGA-2W-A8YY-01 1 162773303 162773303 T C HSD17B7 Missense_Mutation p.L242P 0.28 deleterious(0) probably_damaging(0.966) TCGA-2W-A8YY-01 1 16350407 16350407 C T CLCNKA Silent p.I71I 0.37 TCGA-2W-A8YY-01 1 16388649 16388649 G A FAM131C Silent p.S71S 0.24 TCGA-2W-A8YY-01 1 1638926 1638926 G A CDK11A Silent p.G389G 0.25 TCGA-2W-A8YY-01 1 16451684 16451684 G A EPHA2 3'UTR 0.48 TCGA-2W-A8YY-01 1 16456809 16456809 G A EPHA2 Missense_Mutation p.R861C 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 165171240 165171240 G A LMX1A 3'UTR 0.62 TCGA-2W-A8YY-01 1 165172948 165172948 C A LMX1A 3'UTR 0.36 TCGA-2W-A8YY-01 1 165177318 165177318 T C LMX1A Missense_Mutation p.T267A 0.22 tolerated(0.55) benign(0.007) TCGA-2W-A8YY-01 1 165218804 165218804 T C LMX1A Missense_Mutation p.S113G 0.38 tolerated(0.36) benign(0.142) TCGA-2W-A8YY-01 1 165322389 165322389 C T LMX1A Missense_Mutation p.A63T 0.34 tolerated(0.2) benign(0.027) TCGA-2W-A8YY-01 1 16532809 16532809 C A ARHGEF19 Missense_Mutation p.E388D 0.41 deleterious(0) possibly_damaging(0.877) TCGA-2W-A8YY-01 1 165513595 165513595 T C LRRC52 Missense_Mutation p.V21A 0.45 tolerated(0.39) benign(0.008) TCGA-2W-A8YY-01 1 165551018 165551018 C T RP11-280O1.2 RNA 0.21 TCGA-2W-A8YY-01 1 165624721 165624721 G A MGST3 Missense_Mutation p.G147R 0.20 deleterious_low_confidence(0.04) benign(0.106) TCGA-2W-A8YY-01 1 165632079 165632079 G A ALDH9A1 3'UTR 0.48 TCGA-2W-A8YY-01 1 165649803 165649803 G T ALDH9A1 Missense_Mutation p.A237D 0.46 deleterious(0.03) benign(0.368) TCGA-2W-A8YY-01 1 16577343 16577343 C T FBXO42 Missense_Mutation p.R659Q 0.33 deleterious_low_confidence(0.04) benign(0.001) TCGA-2W-A8YY-01 1 16577745 16577745 C - FBXO42 Frame_Shift_Del p.G525Efs*3 0.32 TCGA-2W-A8YY-01 1 165877308 165877308 G A UCK2 3'UTR 0.32 TCGA-2W-A8YY-01 1 1663958 1663958 G A SLC35E2 Missense_Mutation p.P246L 0.35 tolerated_low_confidence(0.12) benign(0) TCGA-2W-A8YY-01 1 166818191 166818191 C T POGK Silent p.D125D 0.42 TCGA-2W-A8YY-01 1 166819505 166819505 C T POGK Silent p.I563I 0.50 TCGA-2W-A8YY-01 1 166822545 166822545 A G POGK 3'UTR 0.12 TCGA-2W-A8YY-01 1 166845413 166845413 C T TADA1 Missense_Mutation p.G20R 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 166958583 166958583 C T MAEL 5'UTR 0.46 TCGA-2W-A8YY-01 1 167095768 167095768 G A DUSP27 Missense_Mutation p.R467H 0.38 deleterious(0.02) benign(0.035) TCGA-2W-A8YY-01 1 167095879 167095879 C T DUSP27 Missense_Mutation p.A504V 0.50 tolerated(0.43) benign(0.1) TCGA-2W-A8YY-01 1 16731518 16731518 C T SPATA21 Missense_Mutation p.G252D 0.33 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 1 167382311 167382311 C A POU2F1 Missense_Mutation p.S650R 0.36 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 1 16774445 16774445 G A NECAP2 Missense_Mutation p.V92M 0.50 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 1 167745341 167745341 C T MPZL1 Missense_Mutation p.P216S 0.36 tolerated(0.05) benign(0.027) TCGA-2W-A8YY-01 1 167757561 167757561 T C MPZL1 3'UTR 0.47 TCGA-2W-A8YY-01 1 167757667 167757667 T - MPZL1 3'UTR 0.69 TCGA-2W-A8YY-01 1 167780017 167780017 C T ADCY10 Missense_Mutation p.R1539Q 0.64 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 1 167780057 167780057 C A ADCY10 Missense_Mutation p.D1526Y 0.29 tolerated(0.09) possibly_damaging(0.643) TCGA-2W-A8YY-01 1 167787390 167787390 C T ADCY10 Missense_Mutation p.E1468K 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 167793962 167793962 G A ADCY10 Silent p.I1294I 0.33 TCGA-2W-A8YY-01 1 168054972 168054972 C T GPR161 Missense_Mutation p.A483T 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 16810847 16810847 G A CROCCP3 RNA 0.36 TCGA-2W-A8YY-01 1 16817726 16817726 C T CROCCP3 RNA 0.46 TCGA-2W-A8YY-01 1 168250442 168250442 G A TBX19 Silent p.E38E 0.50 TCGA-2W-A8YY-01 1 168281983 168281983 G A TBX19 Missense_Mutation p.G364R 0.39 deleterious(0.02) possibly_damaging(0.748) TCGA-2W-A8YY-01 1 168283469 168283469 T C TBX19 3'UTR 0.12 TCGA-2W-A8YY-01 1 1683797 1683797 G A NADK 3'UTR 0.59 TCGA-2W-A8YY-01 1 168510129 168510129 C T XCL2 3'UTR 0.58 TCGA-2W-A8YY-01 1 168513178 168513178 G T XCL2 Missense_Mutation p.L9I 0.40 deleterious(0.04) possibly_damaging(0.636) TCGA-2W-A8YY-01 1 1685759 1685759 G T NADK Missense_Mutation p.L448M 0.45 deleterious(0.01) probably_damaging(0.968) TCGA-2W-A8YY-01 1 1688614 1688614 G A NADK Silent p.R237R 0.40 TCGA-2W-A8YY-01 1 16895639 16895639 G A NBPF1 Missense_Mutation p.S848L 0.12 tolerated(0.12) possibly_damaging(0.507) TCGA-2W-A8YY-01 1 16935094 16935094 G A NBPF1 5'UTR 0.12 TCGA-2W-A8YY-01 1 169434005 169434005 A - SLC19A2 3'UTR 0.30 TCGA-2W-A8YY-01 1 169435042 169435042 G A SLC19A2 3'UTR 0.18 TCGA-2W-A8YY-01 1 169446549 169446549 A G SLC19A2 Silent p.F217F 0.40 TCGA-2W-A8YY-01 1 169497216 169497216 C T F5 Missense_Mutation p.G1846S 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 169500238 169500238 G A F5 Missense_Mutation p.S1665F 0.29 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 1 169505824 169505824 G A F5 Missense_Mutation p.R1631C 0.10 deleterious(0.03) possibly_damaging(0.886) TCGA-2W-A8YY-01 1 169511692 169511692 C T F5 Missense_Mutation p.R879K 0.25 tolerated(0.26) benign(0.009) TCGA-2W-A8YY-01 1 16953650 16953650 G A CROCCP2 3'Flank 0.10 TCGA-2W-A8YY-01 1 16957436 16957436 G A CROCCP2 RNA 0.10 TCGA-2W-A8YY-01 1 169582924 169582924 G A SELP Silent p.C163C 0.25 TCGA-2W-A8YY-01 1 169677818 169677818 G A SELL Missense_Mutation p.A84V 0.31 deleterious(0.05) benign(0.232) TCGA-2W-A8YY-01 1 1696793 1696793 G A NADK Missense_Mutation p.A18V 0.27 deleterious_low_confidence(0.02) benign(0.022) TCGA-2W-A8YY-01 1 169762046 169762046 C T METTL18 Missense_Mutation p.R264Q 0.25 deleterious(0.03) benign(0.189) TCGA-2W-A8YY-01 1 169776981 169776981 G T C1orf112 Missense_Mutation p.D205Y 0.38 deleterious(0.01) probably_damaging(0.97) TCGA-2W-A8YY-01 1 169822000 169822000 G T C1orf112 Missense_Mutation p.A812S 0.39 tolerated(0.23) benign(0.005) TCGA-2W-A8YY-01 1 170024521 170024521 T C KIFAP3 Missense_Mutation p.H30R 0.47 deleterious(0.01) benign(0.035) TCGA-2W-A8YY-01 1 17046552 17046552 G A ESPNP RNA 0.14 TCGA-2W-A8YY-01 1 17084504 17084504 G A MST1L RNA 0.09 TCGA-2W-A8YY-01 1 17085031 17085031 G A MST1L RNA 0.10 TCGA-2W-A8YY-01 1 170961391 170961391 G T MROH9 Missense_Mutation p.G372V 0.47 deleterious(0) probably_damaging(0.945) TCGA-2W-A8YY-01 1 171236771 171236771 C T FMO1 Silent p.F74F 0.36 TCGA-2W-A8YY-01 1 171254641 171254641 C T FMO1 Silent p.S519S 0.34 TCGA-2W-A8YY-01 1 171254649 171254649 C T FMO1 Missense_Mutation p.A522V 0.41 tolerated(0.53) unknown(0) TCGA-2W-A8YY-01 1 171519254 171519254 G A PRRC2C Missense_Mutation p.V1666I 0.40 unknown(0) TCGA-2W-A8YY-01 1 171526996 171526996 C T PRRC2C Silent p.A1913A 0.50 TCGA-2W-A8YY-01 1 171765717 171765717 C T METTL13 Nonsense_Mutation p.R641* 0.35 TCGA-2W-A8YY-01 1 172520731 172520731 G A SUCO Missense_Mutation p.A48T 0.33 deleterious_low_confidence(0.01) benign(0.251) TCGA-2W-A8YY-01 1 17265564 17265564 C T CROCC Missense_Mutation p.S512F 0.27 probably_damaging(0.994) TCGA-2W-A8YY-01 1 17266467 17266467 C T CROCC Missense_Mutation p.R563W 0.21 probably_damaging(0.999) TCGA-2W-A8YY-01 1 17272857 17272857 G A CROCC Missense_Mutation p.S747N 0.29 benign(0.083) TCGA-2W-A8YY-01 1 17295622 17295622 C T CROCC Silent p.S1696S 0.47 TCGA-2W-A8YY-01 1 17301803 17301803 A C MFAP2 Missense_Mutation p.C137G 0.26 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 17320184 17320184 C T ATP13A2 Silent p.R563R 0.31 TCGA-2W-A8YY-01 1 17330869 17330869 C T ATP13A2 Missense_Mutation p.R172H 0.17 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 173430036 173430036 G A RP11-296O14.3 RNA 0.10 TCGA-2W-A8YY-01 1 173490475 173490475 G A SLC9C2 Nonsense_Mutation p.Q902* 0.33 TCGA-2W-A8YY-01 1 173567075 173567075 C T SLC9C2 Missense_Mutation p.E109K 0.52 deleterious(0) benign(0.122) TCGA-2W-A8YY-01 1 173702899 173702899 G A KLHL20 Missense_Mutation p.R24H 0.39 deleterious(0.04) benign(0.069) TCGA-2W-A8YY-01 1 17371320 17371320 G A SDHB Nonsense_Mutation p.R46* 0.34 TCGA-2W-A8YY-01 1 173726116 173726116 T C KLHL20 Silent p.V323V 0.08 TCGA-2W-A8YY-01 1 173808581 173808581 C T DARS2 Missense_Mutation p.P306L 0.33 deleterious(0) possibly_damaging(0.692) TCGA-2W-A8YY-01 1 173855070 173855070 C A ZBTB37 Missense_Mutation p.F440L 0.39 deleterious(0) possibly_damaging(0.833) TCGA-2W-A8YY-01 1 173878723 173878723 C T SERPINC1 Missense_Mutation p.D374N 0.38 tolerated(0.05) possibly_damaging(0.67) TCGA-2W-A8YY-01 1 173906054 173906054 T C RC3H1 3'UTR 0.20 TCGA-2W-A8YY-01 1 173941664 173941665 - T RC3H1 Frame_Shift_Ins p.G402Rfs*11 0.22 TCGA-2W-A8YY-01 1 17394440 17394440 C T PADI2 3'UTR 0.20 TCGA-2W-A8YY-01 1 173951993 173951993 C T RC3H1 Missense_Mutation p.G214S 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 174190232 174190232 G A RABGAP1L Silent p.S87S 0.42 TCGA-2W-A8YY-01 1 174976327 174976327 A - CACYBP Frame_Shift_Del p.V145Sfs*22 0.25 TCGA-2W-A8YY-01 1 175086149 175086149 C T TNN Missense_Mutation p.R732W 0.31 deleterious(0) possibly_damaging(0.67) TCGA-2W-A8YY-01 1 175092547 175092547 C T TNN Missense_Mutation p.P888S 0.24 deleterious(0.03) possibly_damaging(0.822) TCGA-2W-A8YY-01 1 175092594 175092594 C T TNN Silent p.V903V 0.16 TCGA-2W-A8YY-01 1 17603046 17603046 G A PADI3 Missense_Mutation p.R447Q 0.19 tolerated(0.4) benign(0.167) TCGA-2W-A8YY-01 1 176118202 176118202 A G RFWD2 Silent p.H257H 0.45 TCGA-2W-A8YY-01 1 176526097 176526097 C T PAPPA2 Silent p.S213S 0.25 TCGA-2W-A8YY-01 1 176661379 176661379 C A PAPPA2 Missense_Mutation p.P850H 0.11 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 1 176681105 176681105 G T PAPPA2 Missense_Mutation p.E1262D 0.43 tolerated(0.41) benign(0.039) TCGA-2W-A8YY-01 1 176738795 176738795 G A PAPPA2 Missense_Mutation p.C1459Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 176826585 176826585 G T ASTN1 3'Flank 0.31 TCGA-2W-A8YY-01 1 176826736 176826736 C T ASTN1 3'Flank 0.28 TCGA-2W-A8YY-01 1 176830459 176830459 C A ASTN1 3'UTR 0.46 TCGA-2W-A8YY-01 1 176838112 176838112 T C ASTN1 Missense_Mutation p.E1172G 0.38 deleterious(0) probably_damaging(0.96) TCGA-2W-A8YY-01 1 176926937 176926937 G A ASTN1 Silent p.F588F 0.38 TCGA-2W-A8YY-01 1 177250291 177250291 C T BRINP2 Missense_Mutation p.T660I 0.24 deleterious(0) possibly_damaging(0.905) TCGA-2W-A8YY-01 1 17735596 17735596 C T RCC2 Missense_Mutation p.R520Q 0.40 tolerated(0.08) benign(0.032) TCGA-2W-A8YY-01 1 17740192 17740192 G A RCC2 Nonsense_Mutation p.R350* 0.37 TCGA-2W-A8YY-01 1 17749225 17749225 G A RCC2 Missense_Mutation p.R211W 0.33 deleterious(0.03) benign(0.028) TCGA-2W-A8YY-01 1 177934199 177934199 A G SEC16B Silent p.N172N 0.33 TCGA-2W-A8YY-01 1 178408561 178408561 C T RASAL2 Missense_Mutation p.R227C 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 1 178490188 178490188 G A TEX35 Intron 0.44 TCGA-2W-A8YY-01 1 179033620 179033620 T C FAM20B Silent p.D309D 0.42 TCGA-2W-A8YY-01 1 179079557 179079557 G A ABL2 Missense_Mutation p.S562L 0.51 tolerated(0.14) benign(0.242) TCGA-2W-A8YY-01 1 179292598 179292598 G A SOAT1 Missense_Mutation p.A49T 0.29 tolerated(0.74) benign(0.004) TCGA-2W-A8YY-01 1 179437835 179437835 A G AXDND1 Intron 0.47 TCGA-2W-A8YY-01 1 17944972 17944972 G A ARHGEF10L Intron 0.47 TCGA-2W-A8YY-01 1 179503864 179503864 G T AXDND1 Splice_Site p.X933_splice 0.50 TCGA-2W-A8YY-01 1 17952517 17952517 T C ARHGEF10L Missense_Mutation p.F462L 0.38 deleterious(0.02) possibly_damaging(0.868) TCGA-2W-A8YY-01 1 179660194 179660194 T G TDRD5 3'UTR 0.75 TCGA-2W-A8YY-01 1 179966065 179966065 C T CEP350 Missense_Mutation p.S258F 0.36 benign(0.078) TCGA-2W-A8YY-01 1 179983353 179983353 C T CEP350 Missense_Mutation p.R589C 0.37 probably_damaging(1) TCGA-2W-A8YY-01 1 179990100 179990100 G A CEP350 Missense_Mutation p.S1064N 0.33 probably_damaging(0.999) TCGA-2W-A8YY-01 1 180199678 180199678 C T LHX4 Missense_Mutation p.A5V 0.09 deleterious_low_confidence(0.02) benign(0.002) TCGA-2W-A8YY-01 1 180793942 180793942 C T XPR1 Missense_Mutation p.R273W 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 180849213 180849213 C T XPR1 Nonsense_Mutation p.R604* 0.45 TCGA-2W-A8YY-01 1 180885398 180885398 G T KIAA1614 Missense_Mutation p.W53C 0.29 tolerated(0.06) benign(0.027) TCGA-2W-A8YY-01 1 180945335 180945335 G A STX6 3'UTR 0.46 TCGA-2W-A8YY-01 1 18152526 18152526 G A ACTL8 Missense_Mutation p.A205T 0.10 tolerated(0.22) benign(0.008) TCGA-2W-A8YY-01 1 181689469 181689469 G A CACNA1E Missense_Mutation p.G627S 0.39 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 1 181706750 181706750 C T CACNA1E Missense_Mutation p.A1171V 0.59 deleterious(0) possibly_damaging(0.835) TCGA-2W-A8YY-01 1 181707536 181707536 G A CACNA1E Missense_Mutation p.V1196M 0.29 deleterious(0.01) benign(0.141) TCGA-2W-A8YY-01 1 182369635 182369635 C T TEDDM1 5'UTR 0.21 TCGA-2W-A8YY-01 1 182555524 182555524 C A RNASEL Missense_Mutation p.A140S 0.14 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 1 182568014 182568014 A G RGS16 3'UTR 0.42 TCGA-2W-A8YY-01 1 182783988 182783988 C T NPL Missense_Mutation p.T120I 0.44 deleterious(0.01) benign(0.367) TCGA-2W-A8YY-01 1 182798551 182798551 C T NPL 3'UTR 0.50 TCGA-2W-A8YY-01 1 183072700 183072700 A G LAMC1 Missense_Mutation p.N219S 0.20 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 183083802 183083802 C T LAMC1 Silent p.F386F 0.56 TCGA-2W-A8YY-01 1 183101563 183101563 C T LAMC1 Nonsense_Mutation p.R1199* 0.39 TCGA-2W-A8YY-01 1 183105704 183105704 C T LAMC1 Missense_Mutation p.A1433V 0.26 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 1 183111907 183111907 G A LAMC1 Silent p.P1604P 0.31 TCGA-2W-A8YY-01 1 183206609 183206609 G A LAMC2 Silent p.Q908Q 0.30 TCGA-2W-A8YY-01 1 183221857 183221857 G A NMNAT2 Silent p.D281D 0.54 TCGA-2W-A8YY-01 1 183230167 183230167 G T NMNAT2 Missense_Mutation p.P264H 0.35 deleterious(0.02) possibly_damaging(0.853) TCGA-2W-A8YY-01 1 183255812 183255812 T C NMNAT2 Missense_Mutation p.T145A 0.40 tolerated(0.79) benign(0.001) TCGA-2W-A8YY-01 1 183471415 183471415 G T SMG7 Intron 0.40 TCGA-2W-A8YY-01 1 183519934 183519934 G A SMG7 Missense_Mutation p.S1015N 0.46 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-2W-A8YY-01 1 183521095 183521095 C T SMG7 Intron 0.16 TCGA-2W-A8YY-01 1 183617370 183617370 G A APOBEC4 Missense_Mutation p.R183W 0.33 tolerated(0.07) possibly_damaging(0.803) TCGA-2W-A8YY-01 1 183852974 183852974 G A RGL1 Missense_Mutation p.G257D 0.40 tolerated(0.66) benign(0.003) TCGA-2W-A8YY-01 1 183881285 183881285 C T RGL1 Silent p.S579S 0.43 TCGA-2W-A8YY-01 1 184588704 184588704 A G C1orf21 3'UTR 0.46 TCGA-2W-A8YY-01 1 184589185 184589185 G A C1orf21 3'UTR 0.40 TCGA-2W-A8YY-01 1 184590035 184590035 G A C1orf21 3'UTR 0.26 TCGA-2W-A8YY-01 1 184592830 184592830 C T C1orf21 3'UTR 0.48 TCGA-2W-A8YY-01 1 184662466 184662466 T C EDEM3 3'UTR 0.36 TCGA-2W-A8YY-01 1 184761675 184761675 T C FAM129A 3'UTR 0.39 TCGA-2W-A8YY-01 1 185109172 185109172 G A TRMT1L Missense_Mutation p.L348F 0.37 tolerated(0.33) benign(0.014) TCGA-2W-A8YY-01 1 185114612 185114612 C T TRMT1L Missense_Mutation p.R205H 0.37 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-2W-A8YY-01 1 185171901 185171901 C T SWT1 Missense_Mutation p.P547S 0.17 tolerated(0.2) probably_damaging(0.915) TCGA-2W-A8YY-01 1 185278274 185278274 C A IVNS1ABP Missense_Mutation p.A48S 0.29 deleterious(0.03) possibly_damaging(0.897) TCGA-2W-A8YY-01 1 185902765 185902765 C T HMCN1 Missense_Mutation p.A546V 0.40 benign(0.02) TCGA-2W-A8YY-01 1 185958672 185958672 G A HMCN1 Missense_Mutation p.G1034D 0.13 probably_damaging(1) TCGA-2W-A8YY-01 1 186039861 186039861 C T HMCN1 Missense_Mutation p.A2704V 0.46 probably_damaging(0.997) TCGA-2W-A8YY-01 1 186097231 186097231 A G HMCN1 Missense_Mutation p.T4238A 0.47 probably_damaging(0.994) TCGA-2W-A8YY-01 1 186099111 186099111 T C HMCN1 Silent p.S4306S 0.30 TCGA-2W-A8YY-01 1 186276299 186276299 C T PRG4 Missense_Mutation p.A483V 0.39 unknown(0) TCGA-2W-A8YY-01 1 186314780 186314780 C A TPR Nonsense_Mutation p.E1049* 0.08 TCGA-2W-A8YY-01 1 186325481 186325481 G A TPR Missense_Mutation p.R609C 0.30 possibly_damaging(0.689) TCGA-2W-A8YY-01 1 186643735 186643735 C T PTGS2 Missense_Mutation p.G522D 0.41 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 1 186644428 186644428 C T PTGS2 Missense_Mutation p.R453H 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 186909165 186909165 C T PLA2G4A Silent p.C324C 0.38 TCGA-2W-A8YY-01 1 186946803 186946803 G A PLA2G4A Missense_Mutation p.E615K 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 187610908 187610908 C A ERVMER61-1 RNA 0.63 TCGA-2W-A8YY-01 1 18960877 18960877 C T PAX7 Missense_Mutation p.R56C 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 190067578 190067578 G A BRINP3 Missense_Mutation p.T624I 0.30 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 190423861 190423861 A C BRINP3 Missense_Mutation p.F54V 0.28 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 1 19062346 19062346 G A PAX7 Missense_Mutation p.G459D 0.35 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-2W-A8YY-01 1 19166715 19166715 C T TAS1R2 Missense_Mutation p.R633H 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 192153619 192153619 C T RGS18 Nonsense_Mutation p.R215* 0.50 TCGA-2W-A8YY-01 1 192312170 192312170 C T RGS21 Missense_Mutation p.P2S 0.09 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 1 192780608 192780608 C T RGS2 Missense_Mutation p.A173V 0.26 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 1 192780959 192780959 G A RGS2 3'UTR 0.36 TCGA-2W-A8YY-01 1 192998707 192998707 C T UCHL5 Silent p.E109E 0.27 TCGA-2W-A8YY-01 1 193038516 193038516 C T TROVE2 Missense_Mutation p.A111V 0.49 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 193060681 193060681 G A GLRX2 3'Flank 0.31 TCGA-2W-A8YY-01 1 193105631 193105631 G A CDC73 Intron 0.50 TCGA-2W-A8YY-01 1 193150204 193150204 T C B3GALT2 Silent p.Q163Q 0.27 TCGA-2W-A8YY-01 1 19426979 19426979 G A UBR4 Missense_Mutation p.P4371L 0.38 probably_damaging(0.995) TCGA-2W-A8YY-01 1 19431394 19431394 A G UBR4 Intron 0.36 TCGA-2W-A8YY-01 1 19447920 19447920 A G UBR4 Missense_Mutation p.Y3302H 0.48 possibly_damaging(0.887) TCGA-2W-A8YY-01 1 19473339 19473339 C T UBR4 Silent p.K2595K 0.42 TCGA-2W-A8YY-01 1 19487608 19487608 T A UBR4 Missense_Mutation p.S1737C 0.35 benign(0.379) TCGA-2W-A8YY-01 1 19549300 19549300 C T EMC1 Missense_Mutation p.R802H 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 19550005 19550005 C T EMC1 Missense_Mutation p.R754H 0.22 deleterious(0.01) probably_damaging(0.962) TCGA-2W-A8YY-01 1 19564568 19564568 C T EMC1 Silent p.R385R 0.38 TCGA-2W-A8YY-01 1 1961481 1961481 G A GABRD Silent p.E373E 0.24 TCGA-2W-A8YY-01 1 196311320 196311320 T C KCNT2 Missense_Mutation p.Y481C 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 19632583 19632583 C T AKR7A2 Missense_Mutation p.A283T 0.17 tolerated(0.37) benign(0.004) TCGA-2W-A8YY-01 1 196438166 196438166 G A KCNT2 Silent p.P139P 0.45 TCGA-2W-A8YY-01 1 196716390 196716390 C T CFH Nonsense_Mutation p.R1215* 0.39 TCGA-2W-A8YY-01 1 196920153 196920153 C T CFHR2 Missense_Mutation p.S142F 0.25 tolerated(0.1) benign(0.003) TCGA-2W-A8YY-01 1 197019993 197019993 G A F13B Silent p.C524C 0.35 TCGA-2W-A8YY-01 1 197021780 197021780 A C F13B Silent p.P513P 0.46 TCGA-2W-A8YY-01 1 197059458 197059458 G A ASPM Nonsense_Mutation p.R3233* 0.36 TCGA-2W-A8YY-01 1 197070312 197070312 C T ASPM Missense_Mutation p.R2690Q 0.10 tolerated(0.35) benign(0.013) TCGA-2W-A8YY-01 1 197097649 197097649 G A ASPM Silent p.A969A 0.32 TCGA-2W-A8YY-01 1 197097780 197097780 G T ASPM Missense_Mutation p.L926I 0.32 deleterious(0) possibly_damaging(0.45) TCGA-2W-A8YY-01 1 197123335 197123335 G A ZBTB41 3'UTR 0.41 TCGA-2W-A8YY-01 1 197124487 197124487 C T ZBTB41 3'UTR 0.48 TCGA-2W-A8YY-01 1 197125319 197125319 T G ZBTB41 3'UTR 0.23 TCGA-2W-A8YY-01 1 197150119 197150119 T C ZBTB41 Missense_Mutation p.R559G 0.41 deleterious(0.01) possibly_damaging(0.873) TCGA-2W-A8YY-01 1 197160904 197160904 C A ZBTB41 Nonsense_Mutation p.E416* 0.10 TCGA-2W-A8YY-01 1 197160977 197160977 A G ZBTB41 Silent p.C391C 0.37 TCGA-2W-A8YY-01 1 197168631 197168631 C T ZBTB41 Missense_Mutation p.E325K 0.39 tolerated(0.29) benign(0.002) TCGA-2W-A8YY-01 1 197237456 197237456 G A CRB1 5'UTR 0.36 TCGA-2W-A8YY-01 1 197298000 197298000 C T CRB1 Silent p.F173F 0.34 TCGA-2W-A8YY-01 1 197390220 197390220 G A CRB1 Missense_Mutation p.C421Y 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 197411090 197411090 G A CRB1 Intron 0.44 TCGA-2W-A8YY-01 1 197564456 197564456 G A DENND1B Missense_Mutation p.A310V 0.44 tolerated(0.53) benign(0.126) TCGA-2W-A8YY-01 1 197885716 197885716 G A LHX9 5'Flank 0.26 TCGA-2W-A8YY-01 1 197885820 197885820 C A LHX9 5'Flank 0.31 TCGA-2W-A8YY-01 1 197890501 197890501 G A LHX9 Missense_Mutation p.A149T 0.32 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 1 197890781 197890781 A G LHX9 Missense_Mutation p.Y242C 0.26 deleterious(0.05) possibly_damaging(0.775) TCGA-2W-A8YY-01 1 198222307 198222307 G A NEK7 Silent p.V65V 0.08 TCGA-2W-A8YY-01 1 198247190 198247190 A G NEK7 Missense_Mutation p.M158V 0.30 deleterious(0) possibly_damaging(0.626) TCGA-2W-A8YY-01 1 198678928 198678928 T C PTPRC Silent p.S382S 0.37 TCGA-2W-A8YY-01 1 198725237 198725237 C T PTPRC Missense_Mutation p.P1283L 0.28 deleterious(0.02) benign(0.133) TCGA-2W-A8YY-01 1 19981679 19981679 G A MINOS1-NBL1 Silent p.K52K 0.26 TCGA-2W-A8YY-01 1 19984098 19984100 CGG TGGC MINOS1-NBL1 3'UTR 0.35 TCGA-2W-A8YY-01 1 19984288 19984288 C A MINOS1-NBL1 3'UTR 0.34 TCGA-2W-A8YY-01 1 199996897 199996897 G A NR5A2 5'UTR 0.24 TCGA-2W-A8YY-01 1 200090049 200090049 C T NR5A2 Silent p.F448F 0.36 TCGA-2W-A8YY-01 1 200144876 200144876 T C NR5A2 3'UTR 0.30 TCGA-2W-A8YY-01 1 200375664 200375664 C T ZNF281 3'UTR 0.38 TCGA-2W-A8YY-01 1 200376118 200376118 G T ZNF281 3'UTR 0.35 TCGA-2W-A8YY-01 1 200376187 200376187 T C ZNF281 Missense_Mutation p.S883G 0.51 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 1 200376348 200376348 T C ZNF281 Missense_Mutation p.E829G 0.28 tolerated(0.06) probably_damaging(0.994) TCGA-2W-A8YY-01 1 200522333 200522333 G A KIF14 3'UTR 0.43 TCGA-2W-A8YY-01 1 200558452 200558452 T C KIF14 Missense_Mutation p.K1003E 0.31 tolerated(0.09) benign(0.026) TCGA-2W-A8YY-01 1 200561242 200561242 C T KIF14 Missense_Mutation p.A927T 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 200587135 200587135 A G KIF14 Silent p.P239P 0.27 TCGA-2W-A8YY-01 1 200613460 200613460 C T DDX59 Silent p.Q594Q 0.21 TCGA-2W-A8YY-01 1 200730211 200730211 G T CAMSAP2 Missense_Mutation p.K128N 0.36 tolerated(0.08) possibly_damaging(0.843) TCGA-2W-A8YY-01 1 200819054 200819054 C T CAMSAP2 Missense_Mutation p.R1053C 0.39 tolerated(0.09) benign(0) TCGA-2W-A8YY-01 1 200824011 200824011 C T CAMSAP2 Missense_Mutation p.T1297M 0.44 deleterious(0) possibly_damaging(0.707) TCGA-2W-A8YY-01 1 200829078 200829078 C T CAMSAP2 3'UTR 0.50 TCGA-2W-A8YY-01 1 200843051 200843051 G C GPR25 Missense_Mutation p.A296P 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 200881156 200881156 G A C1orf106 Missense_Mutation p.R512H 0.27 deleterious(0.04) benign(0.025) TCGA-2W-A8YY-01 1 200939511 200939511 G T KIF21B 3'Flank 0.24 TCGA-2W-A8YY-01 1 200940032 200940032 G A KIF21B 3'Flank 0.29 TCGA-2W-A8YY-01 1 200940389 200940389 G A KIF21B 3'Flank 0.42 TCGA-2W-A8YY-01 1 200941843 200941843 C A KIF21B 3'Flank 0.45 TCGA-2W-A8YY-01 1 200942331 200942331 G T KIF21B 3'Flank 0.35 TCGA-2W-A8YY-01 1 200954051 200954051 G A KIF21B Missense_Mutation p.R1247C 0.48 deleterious(0.04) possibly_damaging(0.513) TCGA-2W-A8YY-01 1 200957893 200957893 C T KIF21B Splice_Site p.X1100_splice 0.34 TCGA-2W-A8YY-01 1 200959778 200959778 G A KIF21B Nonsense_Mutation p.R921* 0.43 TCGA-2W-A8YY-01 1 200961421 200961421 G A KIF21B Missense_Mutation p.R792W 0.36 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 1 200961478 200961478 G A KIF21B Missense_Mutation p.R773W 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-2W-A8YY-01 1 200974536 200974536 C T KIF21B Missense_Mutation p.R211H 0.23 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 201061210 201061210 A G CACNA1S Missense_Mutation p.V144A 0.31 tolerated(0.78) benign(0.005) TCGA-2W-A8YY-01 1 201063150 201063150 C T CACNA1S Splice_Site p.X87_splice 0.29 TCGA-2W-A8YY-01 1 201168480 201168480 G A IGFN1 Missense_Mutation p.R129Q 0.15 benign(0.017) TCGA-2W-A8YY-01 1 201181808 201181808 G A IGFN1 Missense_Mutation p.G2596D 0.37 benign(0.39) TCGA-2W-A8YY-01 1 201252927 201252927 A G PKP1 Missense_Mutation p.T33A 0.41 tolerated(0.12) possibly_damaging(0.625) TCGA-2W-A8YY-01 1 201435205 201435205 C T PHLDA3 3'UTR 0.62 TCGA-2W-A8YY-01 1 201618426 201618426 G A NAV1 Silent p.A210A 0.09 TCGA-2W-A8YY-01 1 201751652 201751652 G A NAV1 Missense_Mutation p.R671H 0.20 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 201838732 201838732 C T IPO9 Silent p.I673I 0.32 TCGA-2W-A8YY-01 1 201926494 201926494 C T TIMM17A Missense_Mutation p.R38C 0.40 deleterious(0) possibly_damaging(0.837) TCGA-2W-A8YY-01 1 202097731 202097731 G A GPR37L1 3'UTR 0.29 TCGA-2W-A8YY-01 1 202146311 202146311 G A PTPRVP RNA 0.41 TCGA-2W-A8YY-01 1 202152745 202152745 G T PTPRVP RNA 0.47 TCGA-2W-A8YY-01 1 202156147 202156147 G A PTPRVP Intron 0.14 TCGA-2W-A8YY-01 1 20216925 20216925 G A OTUD3 Missense_Mutation p.R90Q 0.51 deleterious(0.02) possibly_damaging(0.841) TCGA-2W-A8YY-01 1 202287653 202287653 C T LGR6 Missense_Mutation p.S741F 0.33 deleterious(0) possibly_damaging(0.673) TCGA-2W-A8YY-01 1 20234130 20234130 G A OTUD3 Missense_Mutation p.R363H 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 202418288 202418288 G A PPP1R12B Silent p.R613R 0.41 TCGA-2W-A8YY-01 1 202702704 202702704 C T KDM5B Missense_Mutation p.R1245H 0.56 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 202863367 202863367 G A KLHL12 Silent p.Y446Y 0.27 TCGA-2W-A8YY-01 1 202864808 202864808 G A KLHL12 Missense_Mutation p.S326F 0.23 deleterious(0.02) probably_damaging(0.942) TCGA-2W-A8YY-01 1 202914293 202914293 G A ADIPOR1 Silent p.F145F 0.31 TCGA-2W-A8YY-01 1 202931669 202931669 G A CYB5R1 Nonsense_Mutation p.R302* 0.22 TCGA-2W-A8YY-01 1 202991994 202991994 T G TMEM183A Missense_Mutation p.N319K 0.38 tolerated(0.09) benign(0.026) TCGA-2W-A8YY-01 1 202992154 202992154 T C TMEM183A Missense_Mutation p.S373P 0.40 deleterious(0.03) benign(0.072) TCGA-2W-A8YY-01 1 203017750 203017750 C T PPFIA4 5'Flank 0.27 TCGA-2W-A8YY-01 1 203017820 203017820 G A PPFIA4 5'Flank 0.22 TCGA-2W-A8YY-01 1 203025914 203025914 C G PPFIA4 Missense_Mutation p.A242G 0.44 tolerated(0.23) benign(0.001) TCGA-2W-A8YY-01 1 203036858 203036858 G T PPFIA4 Missense_Mutation p.R523M 0.55 deleterious(0) benign(0.094) TCGA-2W-A8YY-01 1 203098165 203098165 G A ADORA1 Missense_Mutation p.A66T 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 203148684 203148684 C T CHI3L1 Silent p.A347A 0.58 TCGA-2W-A8YY-01 1 203191393 203191393 C A CHIT1 Silent p.T222T 0.21 TCGA-2W-A8YY-01 1 203276492 203276492 C A BTG2 Missense_Mutation p.L135I 0.11 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 1 203317115 203317115 C T FMOD Missense_Mutation p.R95H 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 203317176 203317176 C T FMOD Missense_Mutation p.D75N 0.39 tolerated(0.25) benign(0.116) TCGA-2W-A8YY-01 1 203456652 203456652 G A PRELP 3'UTR 0.30 TCGA-2W-A8YY-01 1 203465247 203465247 C T OPTC Silent p.G38G 0.32 TCGA-2W-A8YY-01 1 203677201 203677201 C A ATP2B4 Missense_Mutation p.S509Y 0.29 deleterious(0) possibly_damaging(0.776) TCGA-2W-A8YY-01 1 203689683 203689683 G A ATP2B4 Missense_Mutation p.A805T 0.43 deleterious(0.03) probably_damaging(0.947) TCGA-2W-A8YY-01 1 203690445 203690445 C T ATP2B4 Nonsense_Mutation p.R907* 0.45 TCGA-2W-A8YY-01 1 203743704 203743704 G T LAX1 Missense_Mutation p.E364D 0.35 deleterious(0.03) probably_damaging(0.971) TCGA-2W-A8YY-01 1 203797515 203797515 G A ZC3H11A Missense_Mutation p.R88Q 0.37 deleterious(0.01) probably_damaging(0.94) TCGA-2W-A8YY-01 1 203822112 203822112 T G ZC3H11A 3'UTR 0.22 TCGA-2W-A8YY-01 1 204091110 204091110 G A SOX13 Silent p.L286L 0.35 TCGA-2W-A8YY-01 1 204131263 204131263 G A REN Nonsense_Mutation p.R43* 0.47 TCGA-2W-A8YY-01 1 20416367 20416367 G A PLA2G5 Missense_Mutation p.A91T 0.37 tolerated(0.71) benign(0.003) TCGA-2W-A8YY-01 1 204183150 204183150 G C GOLT1A 5'UTR 0.23 TCGA-2W-A8YY-01 1 204188189 204188189 T - PLEKHA6 3'UTR 0.24 TCGA-2W-A8YY-01 1 204191498 204191498 C A PLEKHA6 3'UTR 0.35 TCGA-2W-A8YY-01 1 204197335 204197335 G A PLEKHA6 Silent p.I969I 0.35 TCGA-2W-A8YY-01 1 204373602 204373602 G A PPP1R15B 3'UTR 0.44 TCGA-2W-A8YY-01 1 204373748 204373748 G T PPP1R15B 3'UTR 0.12 TCGA-2W-A8YY-01 1 204373919 204373919 G A PPP1R15B 3'UTR 0.27 TCGA-2W-A8YY-01 1 204380131 204380131 T C PPP1R15B Missense_Mutation p.T137A 0.34 tolerated(1) benign(0) TCGA-2W-A8YY-01 1 204393206 204393206 C T PIK3C2B 3'UTR 0.36 TCGA-2W-A8YY-01 1 204399155 204399155 C T PIK3C2B Missense_Mutation p.R1431H 0.12 deleterious(0.02) probably_damaging(0.91) TCGA-2W-A8YY-01 1 204410612 204410612 C T PIK3C2B Missense_Mutation p.R1079H 0.56 tolerated(0.08) probably_damaging(0.931) TCGA-2W-A8YY-01 1 204588071 204588071 C T LRRN2 Silent p.L350L 0.34 TCGA-2W-A8YY-01 1 204588157 204588157 G A LRRN2 Missense_Mutation p.R322W 0.26 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 1 204943850 204943850 T C NFASC Missense_Mutation p.L486P 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 204948687 204948687 C T NFASC Missense_Mutation p.P726S 0.42 tolerated(0.4) benign(0.173) TCGA-2W-A8YY-01 1 204966444 204966444 G A NFASC Missense_Mutation p.V977I 0.37 tolerated(0.42) unknown(0) TCGA-2W-A8YY-01 1 205031103 205031103 C T CNTN2 Missense_Mutation p.R362W 0.36 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 20517156 20517156 G A UBXN10 Missense_Mutation p.M34I 0.46 deleterious(0) possibly_damaging(0.56) TCGA-2W-A8YY-01 1 20519410 20519410 G A UBXN10 3'UTR 0.30 TCGA-2W-A8YY-01 1 205197652 205197652 G A TMCC2 5'UTR 0.35 TCGA-2W-A8YY-01 1 205210854 205210854 C T TMCC2 Silent p.A143A 0.32 TCGA-2W-A8YY-01 1 205238260 205238260 C T TMCC2 Silent p.R310R 0.17 TCGA-2W-A8YY-01 1 205273609 205273609 C T NUAK2 Missense_Mutation p.V286M 0.55 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 1 205498796 205498796 C T CDK18 Intron 0.46 TCGA-2W-A8YY-01 1 205549973 205549973 C T MFSD4 Missense_Mutation p.T205M 0.44 deleterious(0.01) possibly_damaging(0.832) TCGA-2W-A8YY-01 1 205571766 205571766 G A MFSD4 3'UTR 0.45 TCGA-2W-A8YY-01 1 205589019 205589019 G A ELK4 Intron 0.38 TCGA-2W-A8YY-01 1 205589082 205589082 C T ELK4 Intron 0.29 TCGA-2W-A8YY-01 1 205589923 205589923 A G ELK4 Missense_Mutation p.F84S 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 205633635 205633637 CTC - SLC45A3 In_Frame_Del p.E50del 0.33 TCGA-2W-A8YY-01 1 205687064 205687064 C T NUCKS1 3'UTR 0.32 TCGA-2W-A8YY-01 1 205688746 205688746 G A NUCKS1 Silent p.G147G 0.33 TCGA-2W-A8YY-01 1 205719102 205719102 G A NUCKS1 5'UTR 0.33 TCGA-2W-A8YY-01 1 205760656 205760656 C T SLC41A1 3'UTR 0.38 TCGA-2W-A8YY-01 1 205766079 205766079 T C SLC41A1 Missense_Mutation p.M349V 0.41 tolerated(0.19) benign(0.003) TCGA-2W-A8YY-01 1 205896677 205896677 G A SLC26A9 Silent p.V386V 0.13 TCGA-2W-A8YY-01 1 206224565 206224565 C T AVPR1B Missense_Mutation p.A42V 0.28 tolerated(0.08) possibly_damaging(0.662) TCGA-2W-A8YY-01 1 206628230 206628230 C T SRGAP2 Silent p.D703D 0.39 TCGA-2W-A8YY-01 1 206634609 206634609 C T SRGAP2 Silent p.C934C 0.31 TCGA-2W-A8YY-01 1 206649631 206649631 A G IKBKE Missense_Mutation p.T156A 0.21 deleterious(0.02) possibly_damaging(0.782) TCGA-2W-A8YY-01 1 206764987 206764987 A - EIF2D 3'UTR 0.27 TCGA-2W-A8YY-01 1 206773635 206773635 C A EIF2D Missense_Mutation p.K310N 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 206907559 206907559 G T MAPKAPK2 3'UTR 0.57 TCGA-2W-A8YY-01 1 206943235 206943235 C T IL10 Missense_Mutation p.R128Q 0.29 deleterious(0.03) benign(0.254) TCGA-2W-A8YY-01 1 207013232 207013232 C T IL19 Missense_Mutation p.A121V 0.36 tolerated(0.09) benign(0.316) TCGA-2W-A8YY-01 1 207107896 207107896 C T PIGR Missense_Mutation p.R525Q 0.44 tolerated(1) benign(0.016) TCGA-2W-A8YY-01 1 207134499 207134499 G A FCAMR Missense_Mutation p.A241V 0.33 tolerated(0.19) benign(0.3) TCGA-2W-A8YY-01 1 207140441 207140441 G A FCAMR Missense_Mutation p.A42V 0.24 deleterious(0.01) probably_damaging(0.938) TCGA-2W-A8YY-01 1 207194667 207194667 G A C1orf116 3'UTR 0.36 TCGA-2W-A8YY-01 1 207198314 207198314 G A C1orf116 Silent p.S67S 0.15 TCGA-2W-A8YY-01 1 207222463 207222463 T C YOD1 Missense_Mutation p.T317A 0.48 tolerated(0.14) benign(0.015) TCGA-2W-A8YY-01 1 207222862 207222862 G A YOD1 Missense_Mutation p.R184C 0.26 deleterious(0.01) benign(0.004) TCGA-2W-A8YY-01 1 207224084 207224084 G A YOD1 Silent p.L98L 0.41 TCGA-2W-A8YY-01 1 207245737 207245737 T C PFKFB2 3'UTR 0.33 TCGA-2W-A8YY-01 1 207252397 207252397 C T PFKFB2 3'Flank 0.30 TCGA-2W-A8YY-01 1 207718753 207718753 C T CR1 Silent p.G779G 0.37 TCGA-2W-A8YY-01 1 207785133 207785133 G T CR1 Missense_Mutation p.R2136I 0.39 tolerated(0.09) possibly_damaging(0.488) TCGA-2W-A8YY-01 1 207818516 207818516 C T CR1L 5'Flank 0.18 TCGA-2W-A8YY-01 1 207857221 207857221 C T CR1L Nonsense_Mutation p.R128* 0.36 TCGA-2W-A8YY-01 1 207925600 207925600 C T CD46 Missense_Mutation p.R15C 0.27 tolerated(0.13) benign(0.044) TCGA-2W-A8YY-01 1 208061371 208061371 G A CD34 Intron 0.44 TCGA-2W-A8YY-01 1 20809890 20809891 - T CAMK2N1 3'UTR 0.37 TCGA-2W-A8YY-01 1 208200384 208200384 G A PLXNA2 3'UTR 0.37 TCGA-2W-A8YY-01 1 208201501 208201501 G T PLXNA2 Nonsense_Mutation p.Y1814* 0.45 TCGA-2W-A8YY-01 1 208202425 208202425 G A PLXNA2 Intron 0.31 TCGA-2W-A8YY-01 1 208218010 208218010 G A PLXNA2 Silent p.I1239I 0.17 TCGA-2W-A8YY-01 1 208224638 208224638 G A PLXNA2 Missense_Mutation p.R1042W 0.39 deleterious(0.02) possibly_damaging(0.664) TCGA-2W-A8YY-01 1 208227865 208227865 G A PLXNA2 Silent p.G919G 0.43 TCGA-2W-A8YY-01 1 20827341 20827341 C T MUL1 Missense_Mutation p.A301T 0.29 tolerated(0.21) benign(0.009) TCGA-2W-A8YY-01 1 20829791 20829791 T - MUL1 Frame_Shift_Del p.V45Ffs*7 0.23 TCGA-2W-A8YY-01 1 208390272 208390272 G A PLXNA2 Silent p.D332D 0.42 TCGA-2W-A8YY-01 1 208390749 208390749 C T PLXNA2 Silent p.V173V 0.09 TCGA-2W-A8YY-01 1 208390866 208390866 C T PLXNA2 Silent p.Q134Q 0.11 TCGA-2W-A8YY-01 1 20975057 20975057 G A PINK1 Missense_Mutation p.G395S 0.33 tolerated(0.15) possibly_damaging(0.895) TCGA-2W-A8YY-01 1 209784816 209784816 C T CAMK1G Silent p.D278D 0.11 TCGA-2W-A8YY-01 1 20981190 20981190 C T DDOST Missense_Mutation p.D205N 0.35 tolerated(0.26) benign(0.426) TCGA-2W-A8YY-01 1 209824327 209824327 C A LAMB3 5'UTR 0.35 TCGA-2W-A8YY-01 1 209878291 209878291 G A HSD11B1 Missense_Mutation p.A2T 0.26 deleterious(0.01) possibly_damaging(0.623) TCGA-2W-A8YY-01 1 209878327 209878327 C T HSD11B1 Missense_Mutation p.L14F 0.29 tolerated(0.14) benign(0.027) TCGA-2W-A8YY-01 1 209953931 209953931 C A TRAF3IP3 Missense_Mutation p.L477I 0.12 deleterious(0) possibly_damaging(0.819) TCGA-2W-A8YY-01 1 20996951 20996951 C T KIF17 Missense_Mutation p.R919H 0.44 deleterious(0.05) benign(0.022) TCGA-2W-A8YY-01 1 210010362 210010362 C T DIEXF Missense_Mutation p.R290W 0.44 deleterious(0.02) possibly_damaging(0.556) TCGA-2W-A8YY-01 1 210016887 210016887 G A DIEXF Missense_Mutation p.V625M 0.47 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 210024595 210024595 A C DIEXF Missense_Mutation p.T692P 0.33 deleterious(0.01) possibly_damaging(0.448) TCGA-2W-A8YY-01 1 21011457 21011457 G A KIF17 Silent p.G692G 0.14 TCGA-2W-A8YY-01 1 21036173 21036173 G A KIF17 Missense_Mutation p.S210L 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 210411338 210411338 C T SERTAD4 Silent p.C11C 0.36 TCGA-2W-A8YY-01 1 210416072 210416072 C T SERTAD4 3'UTR 0.32 TCGA-2W-A8YY-01 1 210416297 210416297 C A SERTAD4 3'UTR 0.42 TCGA-2W-A8YY-01 1 21042048 21042048 C T KIF17 Missense_Mutation p.D106N 0.24 tolerated(0.2) benign(0.013) TCGA-2W-A8YY-01 1 21042076 21042076 C T KIF17 Silent p.G96G 0.41 TCGA-2W-A8YY-01 1 21048302 21048302 G T SH2D5 Missense_Mutation p.L419M 0.29 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 1 2105423 2105423 C T PRKCZ Missense_Mutation p.P458L 0.33 deleterious(0.02) possibly_damaging(0.563) TCGA-2W-A8YY-01 1 210591561 210591561 C T HHAT Missense_Mutation p.R251C 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 21071564 21071564 G A HP1BP3 Missense_Mutation p.A463V 0.33 tolerated_low_confidence(0.18) possibly_damaging(0.679) TCGA-2W-A8YY-01 1 21072051 21072051 G A HP1BP3 Missense_Mutation p.P451L 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-2W-A8YY-01 1 210977474 210977474 C T KCNH1 Silent p.T499T 0.44 TCGA-2W-A8YY-01 1 21103110 21103110 A C HP1BP3 Silent p.S110S 0.37 TCGA-2W-A8YY-01 1 2113342 2113342 C T PRKCZ Intron 0.25 TCGA-2W-A8YY-01 1 21133985 21133985 G A EIF4G3 Missense_Mutation p.R1535W 0.50 deleterious(0) possibly_damaging(0.528) TCGA-2W-A8YY-01 1 211546013 211546013 C T TRAF5 Missense_Mutation p.A548V 0.26 tolerated(1) benign(0.02) TCGA-2W-A8YY-01 1 2116039 2116039 G A PRKCZ Silent p.A531A 0.40 TCGA-2W-A8YY-01 1 2116108 2116108 C T PRKCZ Silent p.S554S 0.37 TCGA-2W-A8YY-01 1 211749172 211749172 C T SLC30A1 Missense_Mutation p.R361Q 0.32 tolerated(0.28) benign(0.037) TCGA-2W-A8YY-01 1 211836258 211836258 G T NEK2 3'UTR 0.35 TCGA-2W-A8YY-01 1 211918229 211918229 G A LPGAT1 3'UTR 0.28 TCGA-2W-A8YY-01 1 211918565 211918565 G T LPGAT1 3'UTR 0.37 TCGA-2W-A8YY-01 1 211919560 211919560 G A LPGAT1 3'UTR 0.22 TCGA-2W-A8YY-01 1 211921184 211921184 G T LPGAT1 3'UTR 0.53 TCGA-2W-A8YY-01 1 212209216 212209216 C T DTL 5'UTR 0.36 TCGA-2W-A8YY-01 1 21268704 21268704 T C EIF4G3 Missense_Mutation p.I265V 0.37 tolerated_low_confidence(1) benign(0) TCGA-2W-A8YY-01 1 21276508 21276508 C T EIF4G3 Missense_Mutation p.D221N 0.48 tolerated_low_confidence(0.17) benign(0.347) TCGA-2W-A8YY-01 1 212791506 212791506 G A ATF3 Missense_Mutation p.R93Q 0.32 tolerated(0.08) probably_damaging(0.947) TCGA-2W-A8YY-01 1 212792806 212792806 C T ATF3 Missense_Mutation p.T152M 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-2W-A8YY-01 1 212912914 212912915 - A NSL1 Frame_Shift_Ins p.G177Wfs*10 0.25 TCGA-2W-A8YY-01 1 213058690 213058690 T C FLVCR1 Missense_Mutation p.V383A 0.32 tolerated(0.17) benign(0.062) TCGA-2W-A8YY-01 1 213134597 213134597 G A VASH2 Splice_Site p.X122_splice 0.29 TCGA-2W-A8YY-01 1 213146178 213146178 G A VASH2 Missense_Mutation p.V208I 0.48 tolerated(0.08) probably_damaging(0.997) TCGA-2W-A8YY-01 1 213414397 213414397 A G RPS6KC1 Silent p.P526P 0.24 TCGA-2W-A8YY-01 1 214170612 214170612 A G PROX1 Missense_Mutation p.D245G 0.29 tolerated(0.17) possibly_damaging(0.76) TCGA-2W-A8YY-01 1 214491482 214491482 C T SMYD2 Missense_Mutation p.H137Y 0.36 deleterious(0) probably_damaging(0.946) TCGA-2W-A8YY-01 1 214638031 214638031 A G PTPN14 Missense_Mutation p.V39A 0.57 tolerated(0.18) probably_damaging(0.997) TCGA-2W-A8YY-01 1 214787117 214787117 A G CENPF Missense_Mutation p.E7G 0.52 probably_damaging(0.997) TCGA-2W-A8YY-01 1 214788316 214788316 G A CENPF Missense_Mutation p.G102R 0.28 probably_damaging(1) TCGA-2W-A8YY-01 1 214813270 214813270 A C CENPF Missense_Mutation p.N530T 0.46 benign(0.015) TCGA-2W-A8YY-01 1 214814444 214814444 A C CENPF Missense_Mutation p.E921D 0.20 benign(0.09) TCGA-2W-A8YY-01 1 214814906 214814906 G A CENPF Silent p.K1075K 0.37 TCGA-2W-A8YY-01 1 214815768 214815768 G T CENPF Missense_Mutation p.D1363Y 0.36 benign(0.243) TCGA-2W-A8YY-01 1 214819649 214819649 G T CENPF Missense_Mutation p.A2246S 0.20 benign(0.085) TCGA-2W-A8YY-01 1 215345350 215345350 T C KCNK2 Missense_Mutation p.V216A 0.48 deleterious(0.02) benign(0.278) TCGA-2W-A8YY-01 1 215409863 215409864 - T KCNK2 3'UTR 0.12 TCGA-2W-A8YY-01 1 215793444 215793444 C T KCTD3 Silent p.Y644Y 0.43 TCGA-2W-A8YY-01 1 215813903 215813903 T C USH2A Missense_Mutation p.K4989E 0.32 benign(0.314) TCGA-2W-A8YY-01 1 215813992 215813992 C T USH2A Missense_Mutation p.G4959D 0.44 probably_damaging(0.957) TCGA-2W-A8YY-01 1 215990538 215990538 C A USH2A Splice_Site p.X3124_splice 0.28 TCGA-2W-A8YY-01 1 216262366 216262366 C T USH2A Missense_Mutation p.G1625E 0.44 benign(0.062) TCGA-2W-A8YY-01 1 216595593 216595593 G T USH2A Missense_Mutation p.S29Y 0.31 possibly_damaging(0.646) TCGA-2W-A8YY-01 1 216679686 216679686 T C ESRRG 3'UTR 0.39 TCGA-2W-A8YY-01 1 216692759 216692759 G T ESRRG Missense_Mutation p.F301L 0.46 deleterious(0.04) probably_damaging(0.99) TCGA-2W-A8YY-01 1 217783443 217783443 G A GPATCH2 Intron 0.21 TCGA-2W-A8YY-01 1 217947747 217947747 G T SPATA17 Missense_Mutation p.K197N 0.35 deleterious(0) probably_damaging(0.917) TCGA-2W-A8YY-01 1 21795052 21795052 C T NBPF3 Intron 0.40 TCGA-2W-A8YY-01 1 21801430 21801430 G A NBPF3 Silent p.G326G 0.25 TCGA-2W-A8YY-01 1 218607517 218607517 G A TGFB2 Missense_Mutation p.D230N 0.38 deleterious(0) probably_damaging(0.924) TCGA-2W-A8YY-01 1 218610805 218610805 G A TGFB2 Silent p.P379P 0.33 TCGA-2W-A8YY-01 1 218614940 218614940 T C TGFB2 3'UTR 0.36 TCGA-2W-A8YY-01 1 21890562 21890562 G A ALPL Silent p.T167T 0.42 TCGA-2W-A8YY-01 1 21930240 21930240 C T RAP1GAP Intron 0.42 TCGA-2W-A8YY-01 1 21932569 21932569 G A RAP1GAP Missense_Mutation p.A537V 0.11 tolerated(0.38) benign(0.143) TCGA-2W-A8YY-01 1 21945544 21945544 G A RAP1GAP Missense_Mutation p.R78C 0.17 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 22005774 22005774 G A USP48 3'UTR 0.37 TCGA-2W-A8YY-01 1 220088928 220088928 C T SLC30A10 Missense_Mutation p.G441R 0.42 tolerated(0.95) benign(0) TCGA-2W-A8YY-01 1 220142159 220142159 G A EPRS Missense_Mutation p.R1510C 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 220151934 220151934 C T EPRS Missense_Mutation p.R1346Q 0.47 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 1 220320888 220320888 A G IARS2 Missense_Mutation p.K984E 0.40 tolerated(0.25) benign(0.314) TCGA-2W-A8YY-01 1 220323791 220323791 G A RAB3GAP2 3'UTR 0.27 TCGA-2W-A8YY-01 1 220359073 220359073 C A RAB3GAP2 Missense_Mutation p.S597I 0.10 tolerated(0.09) possibly_damaging(0.513) TCGA-2W-A8YY-01 1 220379266 220379266 C T RAB3GAP2 Missense_Mutation p.R232Q 0.25 deleterious(0) possibly_damaging(0.844) TCGA-2W-A8YY-01 1 220406170 220406170 C T RAB3GAP2 Missense_Mutation p.A51T 0.38 deleterious_low_confidence(0.01) benign(0.009) TCGA-2W-A8YY-01 1 22050764 22050764 A G USP48 Intron 0.33 TCGA-2W-A8YY-01 1 220702020 220702020 G A MARK1 5'UTR 0.50 TCGA-2W-A8YY-01 1 220824028 220824028 C T MARK1 Nonsense_Mutation p.R513* 0.12 TCGA-2W-A8YY-01 1 220826496 220826496 C T MARK1 Missense_Mutation p.A597V 0.42 tolerated(0.08) benign(0.014) TCGA-2W-A8YY-01 1 220837195 220837195 C T MARK1 3'Flank 0.39 TCGA-2W-A8YY-01 1 220837366 220837366 C A MARK1 3'Flank 0.31 TCGA-2W-A8YY-01 1 220964832 220964832 G A MARC1 Splice_Site p.X92_splice 0.33 TCGA-2W-A8YY-01 1 221057950 221057950 C T HLX Silent p.G457G 0.23 TCGA-2W-A8YY-01 1 221058274 221058274 G A HLX 3'UTR 0.27 TCGA-2W-A8YY-01 1 22150071 22150071 G A LDLRAD2 3'UTR 0.28 TCGA-2W-A8YY-01 1 22154534 22154534 C T HSPG2 Missense_Mutation p.R4174H 0.40 benign(0.013) TCGA-2W-A8YY-01 1 22157753 22157753 C T HSPG2 Silent p.A3839A 0.33 TCGA-2W-A8YY-01 1 22158285 22158285 C T HSPG2 Missense_Mutation p.D3738N 0.44 probably_damaging(1) TCGA-2W-A8YY-01 1 22169833 22169833 A C HSPG2 Silent p.S2905S 0.38 TCGA-2W-A8YY-01 1 22172741 22172741 C T HSPG2 Missense_Mutation p.G2775D 0.35 possibly_damaging(0.521) TCGA-2W-A8YY-01 1 22172742 22172742 C T HSPG2 Missense_Mutation p.G2775S 0.40 probably_damaging(0.957) TCGA-2W-A8YY-01 1 22186364 22186364 G A HSPG2 Missense_Mutation p.R1716W 0.46 probably_damaging(0.993) TCGA-2W-A8YY-01 1 221874774 221874774 A G DUSP10 3'UTR 0.41 TCGA-2W-A8YY-01 1 221875771 221875771 C T DUSP10 Missense_Mutation p.V478M 0.53 deleterious(0) benign(0.053) TCGA-2W-A8YY-01 1 22201401 22201401 G A HSPG2 Missense_Mutation p.R1133C 0.39 probably_damaging(0.996) TCGA-2W-A8YY-01 1 22207276 22207276 C T HSPG2 Missense_Mutation p.R624H 0.27 probably_damaging(0.999) TCGA-2W-A8YY-01 1 22211130 22211130 G A HSPG2 Silent p.S515S 0.50 TCGA-2W-A8YY-01 1 22217146 22217146 A G HSPG2 Missense_Mutation p.Y96H 0.27 probably_damaging(0.987) TCGA-2W-A8YY-01 1 222717501 222717501 C T HHIPL2 Missense_Mutation p.D118N 0.43 deleterious(0) probably_damaging(0.941) TCGA-2W-A8YY-01 1 222721237 222721237 G A HHIPL2 Silent p.P50P 0.40 TCGA-2W-A8YY-01 1 222736543 222736543 C A TAF1A Missense_Mutation p.A353S 0.39 deleterious(0.04) benign(0.135) TCGA-2W-A8YY-01 1 222802739 222802739 C T MIA3 Missense_Mutation p.P726L 0.46 tolerated(0.29) benign(0.001) TCGA-2W-A8YY-01 1 222904759 222904759 C T BROX Silent p.L350L 0.51 TCGA-2W-A8YY-01 1 22303554 22303554 T C CELA3B Missense_Mutation p.S8P 0.32 tolerated(0.11) benign(0.001) TCGA-2W-A8YY-01 1 22310221 22310221 G A CELA3B Missense_Mutation p.A133T 0.38 deleterious(0.02) possibly_damaging(0.805) TCGA-2W-A8YY-01 1 2235336 2235336 G A SKI Silent p.P423P 0.42 TCGA-2W-A8YY-01 1 2238789 2238789 G A SKI 3'UTR 0.25 TCGA-2W-A8YY-01 1 223934745 223934745 G A CAPN2 Missense_Mutation p.G203S 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 223951858 223951858 G A CAPN2 Missense_Mutation p.E547K 0.29 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 224005932 224005932 C T TP53BP2 Intron 0.37 TCGA-2W-A8YY-01 1 22417994 22417994 G T CDC42 Missense_Mutation p.R187M 0.29 deleterious_low_confidence(0.01) benign(0.098) TCGA-2W-A8YY-01 1 22418603 22418603 G T CDC42 3'UTR 0.38 TCGA-2W-A8YY-01 1 224377410 224377410 G T DEGS1 Missense_Mutation p.G72W 0.36 tolerated(1) benign(0) TCGA-2W-A8YY-01 1 224424223 224424223 C T NVL Missense_Mutation p.R784H 0.22 deleterious(0.04) benign(0.017) TCGA-2W-A8YY-01 1 22446855 22446855 G A WNT4 Silent p.R248R 0.31 TCGA-2W-A8YY-01 1 22446858 22446858 G A WNT4 Silent p.R247R 0.46 TCGA-2W-A8YY-01 1 224481991 224481991 G T NVL Missense_Mutation p.P435T 0.08 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 1 22456134 22456134 G A WNT4 Silent p.P96P 0.52 TCGA-2W-A8YY-01 1 224577400 224577400 G A WDR26 3'UTR 0.52 TCGA-2W-A8YY-01 1 225147866 225147866 G T DNAH14 Nonsense_Mutation p.E77* 0.37 TCGA-2W-A8YY-01 1 225195192 225195192 A G DNAH14 Silent p.Q351Q 0.09 TCGA-2W-A8YY-01 1 225230580 225230580 A G DNAH14 Missense_Mutation p.Y530C 0.41 tolerated(0.16) benign(0.002) TCGA-2W-A8YY-01 1 225239431 225239431 C T DNAH14 Silent p.N786N 0.44 TCGA-2W-A8YY-01 1 225438368 225438368 C G DNAH14 Missense_Mutation p.H2231Q 0.36 benign(0) TCGA-2W-A8YY-01 1 225594435 225594435 C T LBR Missense_Mutation p.A472T 0.45 tolerated(0.07) probably_damaging(1) TCGA-2W-A8YY-01 1 225682551 225682551 G A ENAH 3'UTR 0.52 TCGA-2W-A8YY-01 1 225683512 225683512 G A ENAH 3'UTR 0.25 TCGA-2W-A8YY-01 1 225707069 225707069 C T ENAH Silent p.E211E 0.14 TCGA-2W-A8YY-01 1 226016576 226016576 G A EPHX1 Missense_Mutation p.R49H 0.10 tolerated(0.1) benign(0.022) TCGA-2W-A8YY-01 1 226044401 226044401 A G TMEM63A Missense_Mutation p.I508T 0.40 tolerated(0.47) benign(0.297) TCGA-2W-A8YY-01 1 226108103 226108103 G A PYCR2 3'UTR 0.46 TCGA-2W-A8YY-01 1 226125018 226125018 C T LEFTY2 3'UTR 0.25 TCGA-2W-A8YY-01 1 226332803 226332803 A C ACBD3 3'UTR 0.33 TCGA-2W-A8YY-01 1 226333445 226333445 T - ACBD3 3'UTR 0.32 TCGA-2W-A8YY-01 1 226340052 226340052 G A ACBD3 Silent p.D453D 0.42 TCGA-2W-A8YY-01 1 226552706 226552706 G A PARP1 Silent p.P885P 0.32 TCGA-2W-A8YY-01 1 227152860 227152860 G A ADCK3 Missense_Mutation p.E113K 0.43 tolerated_low_confidence(0.16) benign(0.003) TCGA-2W-A8YY-01 1 227204674 227204674 G A CDC42BPA Missense_Mutation p.R1530C 0.10 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 1 227441823 227441823 C T CDC42BPA Missense_Mutation p.R71Q 0.40 tolerated(0.31) benign(0.202) TCGA-2W-A8YY-01 1 227843226 227843226 A C ZNF678 Missense_Mutation p.R425S 0.44 deleterious(0.05) possibly_damaging(0.895) TCGA-2W-A8YY-01 1 227920610 227920610 G A JMJD4 Missense_Mutation p.S360F 0.57 deleterious(0.01) benign(0.222) TCGA-2W-A8YY-01 1 228238617 228238617 C T WNT3A Missense_Mutation p.R192C 0.36 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 1 228248696 228248696 G A WNT3A 3'UTR 0.35 TCGA-2W-A8YY-01 1 228284870 228284870 C T ARF1 Missense_Mutation p.R19C 0.41 tolerated_low_confidence(0.06) benign(0.184) TCGA-2W-A8YY-01 1 228285620 228285620 G A ARF1 Missense_Mutation p.R151K 0.25 deleterious_low_confidence(0.04) benign(0.084) TCGA-2W-A8YY-01 1 228286518 228286518 G A ARF1 3'UTR 0.32 TCGA-2W-A8YY-01 1 228289087 228289087 C T C1orf35 Silent p.E207E 0.35 TCGA-2W-A8YY-01 1 228335227 228335227 G A GUK1 Silent p.P145P 0.42 TCGA-2W-A8YY-01 1 228346177 228346177 C T GJC2 Nonsense_Mutation p.R240* 0.19 TCGA-2W-A8YY-01 1 22837769 22837769 G A ZBTB40 Missense_Mutation p.C644Y 0.16 deleterious(0.01) unknown(0) TCGA-2W-A8YY-01 1 228400308 228400308 G A OBSCN Missense_Mutation p.G275D 0.47 probably_damaging(1) TCGA-2W-A8YY-01 1 228400354 228400354 G A OBSCN Silent p.A290A 0.43 TCGA-2W-A8YY-01 1 228456491 228456491 C T OBSCN Missense_Mutation p.R1892C 0.41 possibly_damaging(0.796) TCGA-2W-A8YY-01 1 228466543 228466543 T C OBSCN Missense_Mutation p.V2767A 0.36 benign(0.368) TCGA-2W-A8YY-01 1 228468436 228468436 C T OBSCN Silent p.D3141D 0.33 TCGA-2W-A8YY-01 1 228475423 228475423 G T OBSCN Silent p.L3620L 0.34 TCGA-2W-A8YY-01 1 228475896 228475896 G A OBSCN Missense_Mutation p.D3745N 0.13 benign(0.056) TCGA-2W-A8YY-01 1 228481310 228481310 C T OBSCN Silent p.T4137T 0.22 TCGA-2W-A8YY-01 1 228482522 228482522 G A OBSCN Missense_Mutation p.A4242T 0.33 probably_damaging(0.997) TCGA-2W-A8YY-01 1 22848895 22848895 G T ZBTB40 Missense_Mutation p.Q1079H 0.39 tolerated(0.07) benign(0.003) TCGA-2W-A8YY-01 1 228504416 228504416 G A OBSCN Missense_Mutation p.R5388H 0.40 probably_damaging(0.998) TCGA-2W-A8YY-01 1 228505292 228505292 G A OBSCN Silent p.E5520E 0.54 TCGA-2W-A8YY-01 1 228505618 228505618 C T OBSCN Silent p.P5582P 0.50 TCGA-2W-A8YY-01 1 228526054 228526054 G A OBSCN Missense_Mutation p.E6646K 0.48 probably_damaging(0.997) TCGA-2W-A8YY-01 1 228539130 228539130 C T OBSCN Silent p.D7133D 0.08 TCGA-2W-A8YY-01 1 228564898 228564898 G A OBSCN Missense_Mutation p.A8686T 0.12 probably_damaging(0.987) TCGA-2W-A8YY-01 1 228582605 228582605 C T TRIM11 Missense_Mutation p.R403H 0.40 tolerated(0.48) benign(0.046) TCGA-2W-A8YY-01 1 228588692 228588692 G A TRIM11 Silent p.C236C 0.54 TCGA-2W-A8YY-01 1 2286775 2286775 G A MORN1 Intron 0.27 TCGA-2W-A8YY-01 1 22902839 22902839 G A EPHA8 Missense_Mutation p.V97I 0.34 tolerated(1) benign(0.106) TCGA-2W-A8YY-01 1 229440908 229440908 T C SPHAR Silent p.C9C 0.37 TCGA-2W-A8YY-01 1 229588306 229588306 G A NUP133 Missense_Mutation p.A1022V 0.26 tolerated(0.3) benign(0.335) TCGA-2W-A8YY-01 1 229600383 229600383 A G NUP133 Silent p.L847L 0.19 TCGA-2W-A8YY-01 1 229730076 229730076 T C TAF5L Missense_Mutation p.T580A 0.38 tolerated(0.96) benign(0.026) TCGA-2W-A8YY-01 1 229738360 229738360 G T TAF5L Missense_Mutation p.T185N 0.37 tolerated(0.58) benign(0.004) TCGA-2W-A8YY-01 1 229745959 229745959 T C TAF5L Splice_Site p.X48_splice 0.27 TCGA-2W-A8YY-01 1 230371767 230371767 C T GALNT2 Missense_Mutation p.R128W 0.32 deleterious(0.02) benign(0.173) TCGA-2W-A8YY-01 1 230410254 230410254 C T GALNT2 Missense_Mutation p.R502W 0.25 tolerated(0.18) possibly_damaging(0.709) TCGA-2W-A8YY-01 1 230458496 230458498 TAG ATAGCAT PGBD5 3'Flank 0.33 TCGA-2W-A8YY-01 1 2305982 2305982 G A MORN1 Silent p.S184S 0.38 TCGA-2W-A8YY-01 1 230795234 230795234 G C COG2 Missense_Mutation p.V33L 0.39 deleterious(0.01) probably_damaging(0.98) TCGA-2W-A8YY-01 1 230829521 230829521 C T COG2 3'UTR 0.56 TCGA-2W-A8YY-01 1 230883424 230883424 C T CAPN9 Missense_Mutation p.P61L 0.46 tolerated(0.11) benign(0.358) TCGA-2W-A8YY-01 1 230895260 230895260 G A CAPN9 Missense_Mutation p.D96N 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-2W-A8YY-01 1 230907777 230907777 G T CAPN9 Missense_Mutation p.Q269H 0.33 tolerated(0.17) possibly_damaging(0.501) TCGA-2W-A8YY-01 1 230923314 230923314 G A CAPN9 Missense_Mutation p.R522Q 0.54 tolerated(1) benign(0) TCGA-2W-A8YY-01 1 230974263 230974263 A T C1orf198 3'UTR 0.19 TCGA-2W-A8YY-01 1 231051963 231051963 A C TTC13 Missense_Mutation p.F690C 0.36 tolerated(0.07) probably_damaging(0.971) TCGA-2W-A8YY-01 1 23110958 23110958 C T EPHB2 Missense_Mutation p.S67L 0.24 deleterious(0.03) benign(0.003) TCGA-2W-A8YY-01 1 23111274 23111274 C T EPHB2 Silent p.S172S 0.17 TCGA-2W-A8YY-01 1 231114909 231114909 G A ARV1 Missense_Mutation p.A20T 0.26 tolerated_low_confidence(0.55) benign(0.001) TCGA-2W-A8YY-01 1 231298687 231298687 G A TRIM67 5'Flank 0.50 TCGA-2W-A8YY-01 1 231337208 231337208 C T TRIM67 Silent p.S493S 0.33 TCGA-2W-A8YY-01 1 231374419 231374419 T C C1orf131 Intron 0.45 TCGA-2W-A8YY-01 1 231386772 231386772 G A GNPAT Silent p.L48L 0.30 TCGA-2W-A8YY-01 1 231406695 231406695 C T GNPAT Missense_Mutation p.R491C 0.36 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 1 231502089 231502089 C T EGLN1 3'UTR 0.31 TCGA-2W-A8YY-01 1 231678260 231678260 A G TSNAX Silent p.S90S 0.57 TCGA-2W-A8YY-01 1 23191538 23191538 T C EPHB2 Missense_Mutation p.V379A 0.19 deleterious(0.04) probably_damaging(0.934) TCGA-2W-A8YY-01 1 2322912 2322912 G A MORN1 Missense_Mutation p.R21W 0.40 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 1 23233304 23233304 C T EPHB2 Missense_Mutation p.R665C 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 23240463 23240463 A G EPHB2 3'UTR 0.50 TCGA-2W-A8YY-01 1 23241236 23241236 C T EPHB2 3'Flank 0.25 TCGA-2W-A8YY-01 1 232534936 232534936 G A SIPA1L2 Silent p.T1702T 0.29 TCGA-2W-A8YY-01 1 232596759 232596759 C T SIPA1L2 Missense_Mutation p.R990H 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 232945501 232945501 C A MAP10 3'UTR 0.09 TCGA-2W-A8YY-01 1 233091311 233091311 A G NTPCR Missense_Mutation p.K15E 0.29 deleterious(0) possibly_damaging(0.732) TCGA-2W-A8YY-01 1 233122078 233122078 G A PCNXL2 Silent p.P2000P 0.44 TCGA-2W-A8YY-01 1 233134148 233134148 G A PCNXL2 Silent p.G1880G 0.44 TCGA-2W-A8YY-01 1 233394057 233394057 C T PCNXL2 Silent p.S517S 0.50 TCGA-2W-A8YY-01 1 233395012 233395012 G A PCNXL2 Missense_Mutation p.A199V 0.41 tolerated_low_confidence(0.57) benign(0.004) TCGA-2W-A8YY-01 1 233431446 233431446 G A PCNXL2 5'UTR 0.43 TCGA-2W-A8YY-01 1 233497915 233497915 G A MLK4 Silent p.E476E 0.57 TCGA-2W-A8YY-01 1 2335020 2335020 G A RER1 3'UTR 0.36 TCGA-2W-A8YY-01 1 233807959 233807959 T C KCNK1 3'UTR 0.48 TCGA-2W-A8YY-01 1 2340015 2340015 G A PEX10 Missense_Mutation p.A159V 0.17 tolerated(0.38) benign(0.005) TCGA-2W-A8YY-01 1 234367298 234367298 C T SLC35F3 Missense_Mutation p.A140V 0.34 tolerated(0.94) benign(0.012) TCGA-2W-A8YY-01 1 234510111 234510111 C T COA6 Silent p.F86F 0.45 TCGA-2W-A8YY-01 1 234565383 234565383 T - TARBP1 Frame_Shift_Del p.I884* 0.31 TCGA-2W-A8YY-01 1 234593415 234593415 C T TARBP1 Missense_Mutation p.E574K 0.41 deleterious(0.05) benign(0.288) TCGA-2W-A8YY-01 1 234743027 234743027 C T IRF2BP2 Silent p.Q540Q 0.43 TCGA-2W-A8YY-01 1 23519705 23519705 C T HTR1D Silent p.A336A 0.54 TCGA-2W-A8YY-01 1 235416062 235416062 G A ARID4B Missense_Mutation p.H113Y 0.38 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 1 235491757 235491757 C T GGPS1 5'Flank 0.23 TCGA-2W-A8YY-01 1 235506611 235506611 C T GGPS1 3'UTR 0.29 TCGA-2W-A8YY-01 1 235652540 235652540 G A B3GALNT2 Silent p.G98G 0.41 TCGA-2W-A8YY-01 1 235657992 235657992 G A B3GALNT2 Missense_Mutation p.R87C 0.30 deleterious(0.01) possibly_damaging(0.836) TCGA-2W-A8YY-01 1 235827315 235827315 T C LYST Missense_Mutation p.T3746A 0.50 tolerated(0.1) benign(0.004) TCGA-2W-A8YY-01 1 235875444 235875444 G A LYST Nonsense_Mutation p.R3280* 0.41 TCGA-2W-A8YY-01 1 235884002 235884002 G A LYST Silent p.Y3173Y 0.47 TCGA-2W-A8YY-01 1 235922304 235922304 C T LYST Silent p.E2283E 0.43 TCGA-2W-A8YY-01 1 235938374 235938374 T C LYST Missense_Mutation p.S1825G 0.29 deleterious(0.02) probably_damaging(0.942) TCGA-2W-A8YY-01 1 235972369 235972369 G A LYST Silent p.C583C 0.35 TCGA-2W-A8YY-01 1 235973568 235973568 T G LYST Silent p.R184R 0.35 TCGA-2W-A8YY-01 1 235993704 235993704 C T LYST Missense_Mutation p.S5N 0.47 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-2W-A8YY-01 1 236371463 236371463 A G GPR137B 3'UTR 0.20 TCGA-2W-A8YY-01 1 236646628 236646628 C T EDARADD 3'Flank 0.35 TCGA-2W-A8YY-01 1 236702220 236702220 G A LGALS8 Missense_Mutation p.R59Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 236702329 236702329 G A LGALS8 Silent p.T95T 0.46 TCGA-2W-A8YY-01 1 236702360 236702360 G A LGALS8 Missense_Mutation p.V106M 0.17 tolerated(0.06) benign(0.143) TCGA-2W-A8YY-01 1 236716971 236716971 G A HEATR1 Silent p.I2049I 0.37 TCGA-2W-A8YY-01 1 236723139 236723139 T C HEATR1 Splice_Site p.X1549_splice 0.33 TCGA-2W-A8YY-01 1 236758888 236758888 G A HEATR1 Missense_Mutation p.H348Y 0.31 deleterious(0.03) possibly_damaging(0.507) TCGA-2W-A8YY-01 1 237015887 237015887 G T MTR Nonsense_Mutation p.E588* 0.43 TCGA-2W-A8YY-01 1 23710907 23710907 G A TCEA3 Nonsense_Mutation p.Q324* 0.42 TCGA-2W-A8YY-01 1 23743761 23743761 G A TCEA3 Nonsense_Mutation p.R121* 0.07 TCGA-2W-A8YY-01 1 23763768 23763768 G A ASAP3 Silent p.S399S 0.46 TCGA-2W-A8YY-01 1 23767882 23767882 C A ASAP3 Nonsense_Mutation p.E278* 0.45 TCGA-2W-A8YY-01 1 237732444 237732444 G T RYR2 Splice_Site p.X1142_splice 0.36 TCGA-2W-A8YY-01 1 237777991 237777991 G A RYR2 Missense_Mutation p.A1855T 0.29 benign(0.001) TCGA-2W-A8YY-01 1 237806681 237806681 C T RYR2 Missense_Mutation p.L2426F 0.38 probably_damaging(0.999) TCGA-2W-A8YY-01 1 237831225 237831225 G T RYR2 Missense_Mutation p.A2853S 0.42 benign(0.262) TCGA-2W-A8YY-01 1 237863596 237863596 G A RYR2 Missense_Mutation p.E3066K 0.45 benign(0.009) TCGA-2W-A8YY-01 1 237905650 237905650 G A RYR2 Splice_Site p.X3715_splice 0.43 TCGA-2W-A8YY-01 1 237947482 237947482 G A RYR2 Missense_Mutation p.R4157Q 0.53 probably_damaging(0.957) TCGA-2W-A8YY-01 1 237948043 237948043 G A RYR2 Missense_Mutation p.G4344E 0.33 benign(0.012) TCGA-2W-A8YY-01 1 237996454 237996455 - A RYR2 3'UTR 0.24 TCGA-2W-A8YY-01 1 238045833 238045833 C T ZP4 Silent p.S504S 0.21 TCGA-2W-A8YY-01 1 238048530 238048530 G A ZP4 Missense_Mutation p.R416C 0.39 deleterious(0.03) probably_damaging(0.932) TCGA-2W-A8YY-01 1 23956006 23956006 G A MDS2 5'UTR 0.42 TCGA-2W-A8YY-01 1 240286549 240286549 C T FMN2 Silent p.C562C 0.12 TCGA-2W-A8YY-01 1 240370340 240370340 C T FMN2 Missense_Mutation p.S743L 0.41 unknown(0) TCGA-2W-A8YY-01 1 240370504 240370504 C T FMN2 Missense_Mutation p.L798F 0.29 unknown(0) TCGA-2W-A8YY-01 1 240371504 240371504 C A FMN2 Missense_Mutation p.P1131H 0.33 unknown(0) TCGA-2W-A8YY-01 1 240653846 240653846 A C GREM2 3'UTR 0.10 TCGA-2W-A8YY-01 1 241032122 241032122 C T RGS7 Missense_Mutation p.A161T 0.45 deleterious(0.02) probably_damaging(0.994) TCGA-2W-A8YY-01 1 24122719 24122719 C T GALE Missense_Mutation p.V304M 0.42 deleterious(0) probably_damaging(0.911) TCGA-2W-A8YY-01 1 24122731 24122731 G A GALE Missense_Mutation p.R300W 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 241672016 241672016 G A FH Missense_Mutation p.P209S 0.10 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 1 241718933 241718933 G T KMO Nonsense_Mutation p.E112* 0.36 TCGA-2W-A8YY-01 1 241753558 241753558 A - KMO Frame_Shift_Del p.K420Rfs*2 0.31 TCGA-2W-A8YY-01 1 241797307 241797307 G A CHML Missense_Mutation p.H588Y 0.33 tolerated(0.61) benign(0.005) TCGA-2W-A8YY-01 1 241797533 241797533 A C CHML Missense_Mutation p.C512W 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 241798756 241798756 C T CHML Missense_Mutation p.A105T 0.23 tolerated(0.13) benign(0.015) TCGA-2W-A8YY-01 1 241958571 241958571 C T WDR64 Silent p.G1010G 0.50 TCGA-2W-A8YY-01 1 241959637 241959637 G T WDR64 Nonsense_Mutation p.G1043* 0.36 TCGA-2W-A8YY-01 1 24201032 24201032 T C CNR2 Missense_Mutation p.D359G 0.34 tolerated_low_confidence(0.05) benign(0.007) TCGA-2W-A8YY-01 1 242030310 242030310 G A EXO1 Missense_Mutation p.G407E 0.42 deleterious(0.02) possibly_damaging(0.461) TCGA-2W-A8YY-01 1 2426952 2426952 C T PLCH2 Missense_Mutation p.A566V 0.40 tolerated(0.59) benign(0.008) TCGA-2W-A8YY-01 1 2428431 2428431 A G PLCH2 Missense_Mutation p.N673D 0.10 deleterious(0) probably_damaging(0.954) TCGA-2W-A8YY-01 1 243260568 243260568 C A RP11-261C10.3 RNA 0.44 TCGA-2W-A8YY-01 1 243303268 243303268 T C CEP170 Missense_Mutation p.T1401A 0.37 tolerated(0.17) benign(0.085) TCGA-2W-A8YY-01 1 243480114 243480114 G A SDCCAG8 Silent p.T329T 0.27 TCGA-2W-A8YY-01 1 243493994 243493994 G A SDCCAG8 Silent p.K407K 0.36 TCGA-2W-A8YY-01 1 243504398 243504398 A G SDCCAG8 Missense_Mutation p.K427E 0.32 deleterious(0) benign(0.209) TCGA-2W-A8YY-01 1 2435508 2435508 G A PLCH2 3'UTR 0.24 TCGA-2W-A8YY-01 1 243716119 243716119 A G AKT3 Silent p.L359L 0.08 TCGA-2W-A8YY-01 1 24409086 24409086 G A MYOM3 Silent p.L697L 0.36 TCGA-2W-A8YY-01 1 24419510 24419510 G A MYOM3 Silent p.D339D 0.34 TCGA-2W-A8YY-01 1 244217254 244217254 C A ZBTB18 Missense_Mutation p.L60I 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 1 244218342 244218342 G A ZBTB18 Silent p.S422S 0.36 TCGA-2W-A8YY-01 1 24433664 24433664 G A MYOM3 Missense_Mutation p.R101W 0.34 tolerated(0.07) benign(0.013) TCGA-2W-A8YY-01 1 2445471 2445471 G A PANK4 Silent p.N515N 0.09 TCGA-2W-A8YY-01 1 244572034 244572034 C T ADSS 3'UTR 0.39 TCGA-2W-A8YY-01 1 244574633 244574633 G A ADSS Missense_Mutation p.A425V 0.40 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 1 244662365 244662365 C T C1orf101 Missense_Mutation p.A138V 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 244868914 244868914 C T DESI2 Silent p.S136S 0.46 TCGA-2W-A8YY-01 1 244870121 244870121 C T DESI2 3'UTR 0.36 TCGA-2W-A8YY-01 1 244871663 244871663 C T DESI2 3'UTR 0.36 TCGA-2W-A8YY-01 1 244872076 244872076 C T DESI2 3'UTR 0.26 TCGA-2W-A8YY-01 1 245016670 245016670 C T HNRNPU 3'Flank 0.38 TCGA-2W-A8YY-01 1 245016920 245016920 G A HNRNPU 3'UTR 0.18 TCGA-2W-A8YY-01 1 245019775 245019775 C T HNRNPU Silent p.A632A 0.38 TCGA-2W-A8YY-01 1 245022668 245022668 C A HNRNPU Missense_Mutation p.E342D 0.35 deleterious(0.01) unknown(0) TCGA-2W-A8YY-01 1 2452234 2452234 C T PANK4 Silent p.R178R 0.43 TCGA-2W-A8YY-01 1 245530451 245530451 G A KIF26B Missense_Mutation p.A261T 0.27 tolerated(0.2) unknown(0) TCGA-2W-A8YY-01 1 245927376 245927376 G A SMYD3 Silent p.G384G 0.30 TCGA-2W-A8YY-01 1 246707921 246707921 T C TFB2M Silent p.L307L 0.36 TCGA-2W-A8YY-01 1 247012932 247012932 G A AHCTF1 Missense_Mutation p.P2135S 0.30 tolerated(0.4) benign(0.133) TCGA-2W-A8YY-01 1 247025439 247025439 G A AHCTF1 Missense_Mutation p.A1195V 0.56 tolerated(0.1) benign(0.056) TCGA-2W-A8YY-01 1 247055167 247055167 G A AHCTF1 Missense_Mutation p.S629F 0.26 tolerated(0.05) possibly_damaging(0.789) TCGA-2W-A8YY-01 1 247079678 247079678 G T AHCTF1 Nonsense_Mutation p.C56* 0.31 TCGA-2W-A8YY-01 1 247263755 247263755 C G ZNF669 Missense_Mutation p.S439T 0.29 tolerated(1) benign(0.162) TCGA-2W-A8YY-01 1 247264313 247264313 G A ZNF669 Missense_Mutation p.T253M 0.40 tolerated(0.05) benign(0.086) TCGA-2W-A8YY-01 1 247264368 247264368 G A ZNF669 Missense_Mutation p.P235S 0.46 tolerated(1) possibly_damaging(0.531) TCGA-2W-A8YY-01 1 247264604 247264604 C T ZNF669 Missense_Mutation p.R156K 0.30 tolerated(0.14) benign(0) TCGA-2W-A8YY-01 1 24727934 24727934 T C STPG1 5'UTR 0.39 TCGA-2W-A8YY-01 1 247320277 247320277 C T ZNF124 Missense_Mutation p.R154H 0.34 tolerated(0.09) benign(0.005) TCGA-2W-A8YY-01 1 247492883 247492883 T C ZNF496 5'UTR 0.44 TCGA-2W-A8YY-01 1 247875765 247875765 A G OR6F1 Missense_Mutation p.L98P 0.11 deleterious(0) possibly_damaging(0.864) TCGA-2W-A8YY-01 1 247875927 247875927 G A OR6F1 Missense_Mutation p.A44V 0.41 tolerated(1) possibly_damaging(0.493) TCGA-2W-A8YY-01 1 248020791 248020791 C T TRIM58 Silent p.S81S 0.30 TCGA-2W-A8YY-01 1 248028201 248028201 G A TRIM58 Silent p.Q237Q 0.30 TCGA-2W-A8YY-01 1 248039615 248039615 G A TRIM58 Missense_Mutation p.D429N 0.30 tolerated(0.45) benign(0.003) TCGA-2W-A8YY-01 1 248084490 248084490 G A OR2T8 Missense_Mutation p.M57I 0.24 deleterious(0.01) benign(0.378) TCGA-2W-A8YY-01 1 248129543 248129543 A G OR2AK2 Missense_Mutation p.I304V 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 1 248343927 248343927 A T OR2M2 Missense_Mutation p.I214F 0.53 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 1 248344068 248344068 C T OR2M2 Missense_Mutation p.R261W 0.42 deleterious(0.05) benign(0.104) TCGA-2W-A8YY-01 1 248436237 248436237 C T OR2T33 Missense_Mutation p.E294K 0.30 deleterious(0.01) possibly_damaging(0.881) TCGA-2W-A8YY-01 1 248436840 248436840 C T OR2T33 Missense_Mutation p.A93T 0.26 tolerated(0.26) benign(0.048) TCGA-2W-A8YY-01 1 248437101 248437101 T C OR2T33 Missense_Mutation p.T6A 0.11 tolerated(0.52) benign(0.001) TCGA-2W-A8YY-01 1 248685722 248685722 T C OR2G6 Missense_Mutation p.Y259H 0.32 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 1 248801868 248801868 G T OR2T35 Missense_Mutation p.A231D 0.71 deleterious(0.01) benign(0.421) TCGA-2W-A8YY-01 1 248813879 248813879 G A OR2T27 Missense_Mutation p.L103F 0.15 tolerated(0.44) benign(0.065) TCGA-2W-A8YY-01 1 249119038 249119038 C T SH3BP5L Missense_Mutation p.A33T 0.40 tolerated_low_confidence(0.54) benign(0.015) TCGA-2W-A8YY-01 1 249142542 249142542 C T ZNF672 Missense_Mutation p.H357Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 249142976 249142976 C T ZNF672 3'UTR 0.10 TCGA-2W-A8YY-01 1 249211854 249211854 T C PGBD2 Silent p.V357V 0.43 TCGA-2W-A8YY-01 1 249212402 249212402 G A PGBD2 Missense_Mutation p.R540Q 0.31 tolerated(0.11) benign(0.154) TCGA-2W-A8YY-01 1 2492133 2492133 G T TNFRSF14 Missense_Mutation p.E177D 0.40 tolerated(0.23) benign(0.032) TCGA-2W-A8YY-01 1 24981354 24981354 G A SRRM1 Missense_Mutation p.R350H 0.39 unknown(0) TCGA-2W-A8YY-01 1 24995680 24995680 G A SRRM1 Silent p.R602R 0.47 TCGA-2W-A8YY-01 1 25168493 25168493 T C CLIC4 3'UTR 0.12 TCGA-2W-A8YY-01 1 25170679 25170679 T G CLIC4 3'UTR 0.36 TCGA-2W-A8YY-01 1 2520387 2520387 G A FAM213B Missense_Mutation p.V193I 0.27 tolerated(0.56) benign(0.006) TCGA-2W-A8YY-01 1 25228935 25228935 G A RUNX3 Missense_Mutation p.P323L 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 25549517 25549517 C T SYF2 3'UTR 0.32 TCGA-2W-A8YY-01 1 25558401 25558401 G T SYF2 Intron 0.36 TCGA-2W-A8YY-01 1 25785021 25785021 A C TMEM57 Missense_Mutation p.K264N 0.48 tolerated(0.16) benign(0.306) TCGA-2W-A8YY-01 1 26136204 26136204 G A SEPN1 Silent p.P301P 0.39 TCGA-2W-A8YY-01 1 26159076 26159076 C T MTFR1L 3'UTR 0.42 TCGA-2W-A8YY-01 1 26190020 26190020 G A PAQR7 Missense_Mutation p.A104V 0.38 deleterious(0.01) possibly_damaging(0.898) TCGA-2W-A8YY-01 1 26190045 26190045 C T PAQR7 Missense_Mutation p.V96M 0.09 deleterious(0.04) possibly_damaging(0.87) TCGA-2W-A8YY-01 1 26349627 26349627 C T EXTL1 Missense_Mutation p.L164F 0.49 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 1 26357079 26357079 C T EXTL1 Missense_Mutation p.T365I 0.47 deleterious(0) benign(0.391) TCGA-2W-A8YY-01 1 26362561 26362561 C T EXTL1 3'UTR 0.17 TCGA-2W-A8YY-01 1 26365752 26365752 G A SLC30A2 Missense_Mutation p.R340C 0.57 tolerated(0.21) benign(0.005) TCGA-2W-A8YY-01 1 26369172 26369172 G T SLC30A2 Silent p.G200G 0.30 TCGA-2W-A8YY-01 1 26370830 26370830 C T SLC30A2 Missense_Mutation p.R126Q 0.30 deleterious(0) possibly_damaging(0.828) TCGA-2W-A8YY-01 1 26448530 26448530 G A PDIK1L Missense_Mutation p.R163Q 0.49 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 26524226 26524226 G A CATSPER4 Missense_Mutation p.R170Q 0.30 deleterious(0) benign(0.288) TCGA-2W-A8YY-01 1 26570743 26570743 C T CEP85 Missense_Mutation p.R48C 0.32 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 1 26604510 26604510 C A CEP85 3'UTR 0.38 TCGA-2W-A8YY-01 1 26648741 26648741 C T AIM1L Missense_Mutation p.S730N 0.29 deleterious(0.04) benign(0.04) TCGA-2W-A8YY-01 1 26658088 26658088 C T AIM1L Silent p.T528T 0.38 TCGA-2W-A8YY-01 1 26688508 26688508 G A ZNF683 Silent p.C383C 0.24 TCGA-2W-A8YY-01 1 26752894 26752894 G A LIN28A Missense_Mutation p.R192Q 0.17 tolerated_low_confidence(0.48) benign(0.001) TCGA-2W-A8YY-01 1 27056351 27056351 G A ARID1A Silent p.Q449Q 0.25 TCGA-2W-A8YY-01 1 27106861 27106861 C T ARID1A Nonsense_Mutation p.R2158* 0.42 TCGA-2W-A8YY-01 1 27107403 27107403 C T ARID1A 3'UTR 0.46 TCGA-2W-A8YY-01 1 27107763 27107763 C T ARID1A 3'UTR 0.29 TCGA-2W-A8YY-01 1 27108115 27108115 G A ARID1A 3'UTR 0.46 TCGA-2W-A8YY-01 1 27216492 27216492 G A GPN2 Silent p.F32F 0.65 TCGA-2W-A8YY-01 1 27220773 27220773 G A GPATCH3 Silent p.G335G 0.36 TCGA-2W-A8YY-01 1 27223847 27223847 C T GPATCH3 Missense_Mutation p.G274E 0.41 tolerated(0.55) benign(0.001) TCGA-2W-A8YY-01 1 27326783 27326783 C T TRNP1 3'UTR 0.30 TCGA-2W-A8YY-01 1 27326829 27326829 C T TRNP1 3'UTR 0.24 TCGA-2W-A8YY-01 1 27426631 27426631 C T SLC9A1 3'UTR 0.43 TCGA-2W-A8YY-01 1 27428938 27428938 G A SLC9A1 Silent p.I586I 0.35 TCGA-2W-A8YY-01 1 27429747 27429747 C T SLC9A1 Silent p.T514T 0.48 TCGA-2W-A8YY-01 1 27432240 27432240 G A SLC9A1 Intron 0.30 TCGA-2W-A8YY-01 1 27440608 27440608 G A SLC9A1 Silent p.G174G 0.33 TCGA-2W-A8YY-01 1 27480692 27480692 G A SLC9A1 Missense_Mutation p.T45I 0.42 deleterious_low_confidence(0.03) benign(0) TCGA-2W-A8YY-01 1 27630213 27630213 T C WDTC1 Missense_Mutation p.Y523H 0.23 tolerated(0.41) benign(0.003) TCGA-2W-A8YY-01 1 27631522 27631522 C T WDTC1 Silent p.D557D 0.41 TCGA-2W-A8YY-01 1 27632871 27632871 C T WDTC1 Silent p.S676S 0.30 TCGA-2W-A8YY-01 1 27632925 27632925 T C WDTC1 3'UTR 0.10 TCGA-2W-A8YY-01 1 27633913 27633913 C T WDTC1 3'UTR 0.43 TCGA-2W-A8YY-01 1 27634101 27634101 C T WDTC1 3'UTR 0.33 TCGA-2W-A8YY-01 1 27676964 27676964 C T SYTL1 Silent p.N331N 0.22 TCGA-2W-A8YY-01 1 27679830 27679830 G A SYTL1 Missense_Mutation p.R467H 0.59 tolerated(0.32) benign(0.044) TCGA-2W-A8YY-01 1 27685051 27685051 C A MAP3K6 Missense_Mutation p.A879S 0.29 deleterious(0) possibly_damaging(0.622) TCGA-2W-A8YY-01 1 27689504 27689504 C A MAP3K6 Missense_Mutation p.R327M 0.26 tolerated(0.12) probably_damaging(0.95) TCGA-2W-A8YY-01 1 27720701 27720701 C T GPR3 Silent p.D133D 0.41 TCGA-2W-A8YY-01 1 27720959 27720959 C T GPR3 Silent p.I219I 0.51 TCGA-2W-A8YY-01 1 27732458 27732458 C T WASF2 3'UTR 0.23 TCGA-2W-A8YY-01 1 27734757 27734757 G A WASF2 Missense_Mutation p.R475C 0.27 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 27876743 27876743 G A AHDC1 Silent p.C628C 0.36 TCGA-2W-A8YY-01 1 27941996 27941996 C T FGR Missense_Mutation p.A323T 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 1 28527719 28527719 G T DNAJC8 3'UTR 0.35 TCGA-2W-A8YY-01 1 28661200 28661200 G A MED18 Missense_Mutation p.D116N 0.28 tolerated(0.16) benign(0.005) TCGA-2W-A8YY-01 1 28792231 28792231 T C PHACTR4 Silent p.L113L 0.24 TCGA-2W-A8YY-01 1 28800570 28800570 C T PHACTR4 Missense_Mutation p.S453L 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 28823053 28823053 C T PHACTR4 Missense_Mutation p.R711C 0.60 deleterious(0) probably_damaging(0.919) TCGA-2W-A8YY-01 1 28835203 28835203 C T SNORA73B RNA 0.29 TCGA-2W-A8YY-01 1 28893908 28893908 C T TRNAU1AP Silent p.S171S 0.34 TCGA-2W-A8YY-01 1 28893912 28893912 G A TRNAU1AP Missense_Mutation p.A173T 0.34 deleterious(0) probably_damaging(0.931) TCGA-2W-A8YY-01 1 28897701 28897701 C T TRNAU1AP Missense_Mutation p.P182S 0.13 tolerated(0.37) benign(0.002) TCGA-2W-A8YY-01 1 28920640 28920640 G A RAB42 3'UTR 0.38 TCGA-2W-A8YY-01 1 29023455 29023455 G A GMEB1 Missense_Mutation p.G163R 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 29070390 29070390 G T YTHDF2 Missense_Mutation p.K536N 0.33 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 1 29189684 29189684 C T OPRD1 Silent p.P336P 0.25 TCGA-2W-A8YY-01 1 29365899 29365899 C T EPB41 Missense_Mutation p.R533C 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 29533300 29533300 A G MECR Missense_Mutation p.L175S 0.13 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 29630479 29630479 G A PTPRU Silent p.A873A 0.31 TCGA-2W-A8YY-01 1 29649951 29649951 G A PTPRU Silent p.S1309S 0.37 TCGA-2W-A8YY-01 1 2979320 2979320 G A LINC00982 RNA 0.34 TCGA-2W-A8YY-01 1 2979414 2979414 C T LINC00982 RNA 0.34 TCGA-2W-A8YY-01 1 2983950 2983950 C T PRDM16 5'Flank 0.30 TCGA-2W-A8YY-01 1 31189164 31189164 C A MATN1 Missense_Mutation p.G267C 0.36 tolerated(0.12) benign(0.015) TCGA-2W-A8YY-01 1 31189691 31189691 T C MATN1 Missense_Mutation p.T246A 0.37 tolerated(0.49) benign(0.012) TCGA-2W-A8YY-01 1 31194488 31194488 C T MATN1 Missense_Mutation p.E69K 0.12 tolerated(0.09) benign(0.048) TCGA-2W-A8YY-01 1 31196320 31196320 C T MATN1 Missense_Mutation p.A27T 0.33 tolerated(0.21) benign(0.02) TCGA-2W-A8YY-01 1 31230526 31230526 C T LAPTM5 Missense_Mutation p.A23T 0.50 tolerated(0.48) benign(0.046) TCGA-2W-A8YY-01 1 31405847 31405847 A - PUM1 3'UTR 0.54 TCGA-2W-A8YY-01 1 31409640 31409640 C A PUM1 Missense_Mutation p.E1095D 0.44 deleterious(0.03) benign(0.068) TCGA-2W-A8YY-01 1 31452917 31452917 G A PUM1 Missense_Mutation p.A449V 0.37 deleterious(0) possibly_damaging(0.592) TCGA-2W-A8YY-01 1 31901856 31901856 C T SERINC2 Missense_Mutation p.A280V 0.48 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 1 32098866 32098866 C T PEF1 Silent p.S125S 0.12 TCGA-2W-A8YY-01 1 32151332 32151332 G A COL16A1 Nonsense_Mutation p.Q642* 0.40 TCGA-2W-A8YY-01 1 32161725 32161725 C T COL16A1 Silent p.T294T 0.33 TCGA-2W-A8YY-01 1 32162681 32162682 - G COL16A1 Frame_Shift_Ins p.E250Rfs*13 0.30 TCGA-2W-A8YY-01 1 32200941 32200941 G T BAI2 Intron 0.09 TCGA-2W-A8YY-01 1 32222151 32222151 C T BAI2 Missense_Mutation p.R96H 0.44 tolerated(0.08) possibly_damaging(0.715) TCGA-2W-A8YY-01 1 32374325 32374325 G A PTP4A2 3'UTR 0.44 TCGA-2W-A8YY-01 1 32646878 32646878 C T TXLNA Missense_Mutation p.R69C 0.33 tolerated(0.21) benign(0) TCGA-2W-A8YY-01 1 32655696 32655696 G A TXLNA Missense_Mutation p.R270H 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 1 32660533 32660533 C A TXLNA Missense_Mutation p.L460M 0.13 deleterious(0.01) possibly_damaging(0.823) TCGA-2W-A8YY-01 1 32660801 32660801 C T TXLNA 3'UTR 0.33 TCGA-2W-A8YY-01 1 32828389 32828390 - A TSSK3 Frame_Shift_Ins p.H32Tfs*8 0.09 TCGA-2W-A8YY-01 1 33060685 33060685 C A ZBTB8A Missense_Mutation p.P285Q 0.35 possibly_damaging(0.866) TCGA-2W-A8YY-01 1 33147594 33147594 A G RBBP4 3'UTR 0.23 TCGA-2W-A8YY-01 1 33231393 33231393 G A KIAA1522 Intron 0.41 TCGA-2W-A8YY-01 1 33236712 33236712 C T KIAA1522 Silent p.D644D 0.45 TCGA-2W-A8YY-01 1 33238866 33238866 A G KIAA1522 3'UTR 0.34 TCGA-2W-A8YY-01 1 3328280 3328280 T G PRDM16 Missense_Mutation p.F507V 0.47 tolerated(0.07) possibly_damaging(0.698) TCGA-2W-A8YY-01 1 33330169 33330169 G A FNDC5 Intron 0.50 TCGA-2W-A8YY-01 1 33360098 33360098 G T HPCA 3'UTR 0.38 TCGA-2W-A8YY-01 1 33361553 33361553 G A TMEM54 Silent p.I76I 0.39 TCGA-2W-A8YY-01 1 33402066 33402066 A G RNF19B 3'UTR 0.36 TCGA-2W-A8YY-01 1 33402276 33402276 G A RNF19B 3'UTR 0.50 TCGA-2W-A8YY-01 1 3342248 3342248 C T PRDM16 Missense_Mutation p.R1015C 0.41 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 1 3342703 3342703 C T PRDM16 Silent p.D1066D 0.38 TCGA-2W-A8YY-01 1 3347576 3347576 C A PRDM16 Missense_Mutation p.T1142N 0.36 tolerated(0.16) benign(0.019) TCGA-2W-A8YY-01 1 3350389 3350389 C T PRDM16 3'UTR 0.29 TCGA-2W-A8YY-01 1 33586064 33586064 C A ADC 3'Flank 0.39 TCGA-2W-A8YY-01 1 33764619 33764619 G T ZNF362 Missense_Mutation p.G412V 0.29 deleterious_low_confidence(0.01) benign(0.058) TCGA-2W-A8YY-01 1 33764660 33764660 C T ZNF362 3'UTR 0.31 TCGA-2W-A8YY-01 1 33765622 33765622 C T ZNF362 3'UTR 0.33 TCGA-2W-A8YY-01 1 33790533 33790533 G A PHC2 Missense_Mutation p.A837V 0.35 deleterious(0.02) possibly_damaging(0.874) TCGA-2W-A8YY-01 1 33794483 33794483 G A PHC2 Missense_Mutation p.R804C 0.52 tolerated(0.14) probably_damaging(0.985) TCGA-2W-A8YY-01 1 33795742 33795742 G T PHC2 Missense_Mutation p.A692D 0.39 tolerated(0.19) benign(0.04) TCGA-2W-A8YY-01 1 3379641 3379641 C T ARHGEF16 5'UTR 0.43 TCGA-2W-A8YY-01 1 3379700 3379700 C T ARHGEF16 Missense_Mutation p.R18C 0.38 deleterious(0.01) probably_damaging(0.935) TCGA-2W-A8YY-01 1 3395140 3395140 G A ARHGEF16 Missense_Mutation p.G593D 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 1 33954159 33954159 G A ZSCAN20 Missense_Mutation p.G171E 0.32 tolerated(1) benign(0.008) TCGA-2W-A8YY-01 1 3424358 3424358 C T MEGF6 Splice_Site p.X597_splice 0.46 TCGA-2W-A8YY-01 1 3428207 3428207 C T MEGF6 Missense_Mutation p.G341S 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 3432002 3432002 C T MEGF6 Missense_Mutation p.G232R 0.37 tolerated(0.23) benign(0.148) TCGA-2W-A8YY-01 1 34666455 34666455 C A C1orf94 Silent p.A364A 0.28 TCGA-2W-A8YY-01 1 34684291 34684291 G A C1orf94 Missense_Mutation p.G576S 0.51 tolerated(0.46) benign(0.061) TCGA-2W-A8YY-01 1 3519068 3519068 G A MEGF6 Silent p.G76G 0.38 TCGA-2W-A8YY-01 1 35223464 35223464 C T GJB5 Missense_Mutation p.S178F 0.38 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 1 35227136 35227136 A G GJB4 Missense_Mutation p.H94R 0.48 deleterious(0.04) benign(0.441) TCGA-2W-A8YY-01 1 35251928 35251928 G A GJB3 3'UTR 0.41 TCGA-2W-A8YY-01 1 35320955 35320955 G A SMIM12 3'UTR 0.26 TCGA-2W-A8YY-01 1 35321548 35321548 T C SMIM12 Missense_Mutation p.T11A 0.45 tolerated(0.12) benign(0.002) TCGA-2W-A8YY-01 1 35370086 35370086 C A DLGAP3 Missense_Mutation p.S300I 0.34 deleterious(0) benign(0.157) TCGA-2W-A8YY-01 1 3545092 3545092 C T TPRG1L Silent p.Y248Y 0.40 TCGA-2W-A8YY-01 1 35580332 35580332 C T ZMYM1 Silent p.I967I 0.31 TCGA-2W-A8YY-01 1 35654658 35654658 C T SFPQ Missense_Mutation p.R548H 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 1 35865124 35865124 C T ZMYM4 Missense_Mutation p.R1159C 0.32 deleterious(0.01) possibly_damaging(0.61) TCGA-2W-A8YY-01 1 35915520 35915520 G A KIAA0319L Silent p.T767T 0.38 TCGA-2W-A8YY-01 1 36023662 36023662 T G NCDN 5'UTR 0.50 TCGA-2W-A8YY-01 1 36026624 36026624 C T NCDN Missense_Mutation p.A291V 0.33 tolerated(1) benign(0.083) TCGA-2W-A8YY-01 1 36028136 36028136 C T NCDN Silent p.Y429Y 0.37 TCGA-2W-A8YY-01 1 36028876 36028876 C T NCDN Missense_Mutation p.P487S 0.12 deleterious(0.02) probably_damaging(0.951) TCGA-2W-A8YY-01 1 36029420 36029420 G A NCDN Missense_Mutation p.A555T 0.43 tolerated(0.35) benign(0.004) TCGA-2W-A8YY-01 1 36031353 36031355 CCT - NCDN 3'UTR 0.43 TCGA-2W-A8YY-01 1 36032283 36032283 C T NCDN 3'UTR 0.22 TCGA-2W-A8YY-01 1 3607478 3607478 C T TP73 Intron 0.45 TCGA-2W-A8YY-01 1 36181489 36181489 G A C1orf216 Missense_Mutation p.P145L 0.25 deleterious(0.02) benign(0.084) TCGA-2W-A8YY-01 1 36181728 36181728 G A C1orf216 Silent p.P65P 0.22 TCGA-2W-A8YY-01 1 36202012 36202012 C T CLSPN 3'UTR 0.35 TCGA-2W-A8YY-01 1 36203017 36203017 G A CLSPN Missense_Mutation p.R1224C 0.56 tolerated(0.13) benign(0.022) TCGA-2W-A8YY-01 1 36319100 36319100 C T AGO4 Missense_Mutation p.A827V 0.29 deleterious(0.01) benign(0.118) TCGA-2W-A8YY-01 1 36386016 36386016 A G AGO1 3'UTR 0.40 TCGA-2W-A8YY-01 1 36470005 36470005 T C AGO3 Missense_Mutation p.I241T 0.48 tolerated(0.1) benign(0.188) TCGA-2W-A8YY-01 1 36563385 36563385 C T COL8A2 Missense_Mutation p.V633M 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 36563643 36563643 G A COL8A2 Missense_Mutation p.P547S 0.33 deleterious(0.03) probably_damaging(0.992) TCGA-2W-A8YY-01 1 36643530 36643530 C - MAP7D1 Frame_Shift_Del p.C481Afs*94 0.29 TCGA-2W-A8YY-01 1 36805818 36805818 G A STK40 3'UTR 0.38 TCGA-2W-A8YY-01 1 36888368 36888368 C T OSCP1 Splice_Site p.X250_splice 0.28 TCGA-2W-A8YY-01 1 3692043 3692043 C T SMIM1 Missense_Mutation p.R36C 0.35 deleterious(0.03) benign(0.292) TCGA-2W-A8YY-01 1 36937097 36937097 G T CSF3R Missense_Mutation p.L408I 0.47 tolerated(0.06) possibly_damaging(0.775) TCGA-2W-A8YY-01 1 37307496 37307496 G A GRIK3 Silent p.Y457Y 0.33 TCGA-2W-A8YY-01 1 3731798 3731798 G A CEP104 3'UTR 0.29 TCGA-2W-A8YY-01 1 3731963 3731963 G A CEP104 3'UTR 0.30 TCGA-2W-A8YY-01 1 3754080 3754080 G A CEP104 Nonsense_Mutation p.R299* 0.28 TCGA-2W-A8YY-01 1 3761480 3761480 G A CEP104 Missense_Mutation p.T186M 0.39 deleterious(0) possibly_damaging(0.885) TCGA-2W-A8YY-01 1 3765182 3765182 G A CEP104 Nonsense_Mutation p.R93* 0.39 TCGA-2W-A8YY-01 1 37941416 37941416 C T ZC3H12A Missense_Mutation p.P107S 0.48 tolerated(0.21) benign(0.085) TCGA-2W-A8YY-01 1 37948385 37948385 C T ZC3H12A Missense_Mutation p.R325W 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 37958263 37958263 C T MEAF6 3'UTR 0.36 TCGA-2W-A8YY-01 1 38006293 38006293 C A SNIP1 Nonsense_Mutation p.E131* 0.49 TCGA-2W-A8YY-01 1 38047863 38047863 G A GNL2 Silent p.G290G 0.27 TCGA-2W-A8YY-01 1 38181572 38181572 C T EPHA10 3'Flank 0.67 TCGA-2W-A8YY-01 1 38265660 38265660 G A MANEAL Missense_Mutation p.A387T 0.41 deleterious(0.01) possibly_damaging(0.701) TCGA-2W-A8YY-01 1 38265825 38265825 C T MANEAL Missense_Mutation p.R442C 0.34 deleterious(0.02) probably_damaging(0.938) TCGA-2W-A8YY-01 1 38275473 38275473 C T MTF1 3'UTR 0.30 TCGA-2W-A8YY-01 1 38280745 38280745 A G MTF1 3'UTR 0.20 TCGA-2W-A8YY-01 1 38341371 38341371 G A INPP5B Silent p.D565D 0.38 TCGA-2W-A8YY-01 1 38344060 38344060 C T INPP5B Intron 0.11 TCGA-2W-A8YY-01 1 38462689 38462689 G A FHL3 3'UTR 0.40 TCGA-2W-A8YY-01 1 38463125 38463125 C T FHL3 Silent p.P265P 0.42 TCGA-2W-A8YY-01 1 38484210 38484210 C T UTP11L Silent p.D101D 0.23 TCGA-2W-A8YY-01 1 38484942 38484942 G A UTP11L Missense_Mutation p.A152T 0.48 deleterious(0) probably_damaging(0.969) TCGA-2W-A8YY-01 1 39800046 39800046 G A MACF1 Intron 0.32 TCGA-2W-A8YY-01 1 39838399 39838399 T C MACF1 Intron 0.36 TCGA-2W-A8YY-01 1 39851255 39851255 G A MACF1 Silent p.E2604E 0.38 TCGA-2W-A8YY-01 1 39853293 39853293 T G MACF1 Missense_Mutation p.S2865A 0.33 benign(0.006) TCGA-2W-A8YY-01 1 39905063 39905063 A G MACF1 Missense_Mutation p.D4054G 0.43 probably_damaging(0.964) TCGA-2W-A8YY-01 1 39913463 39913463 C T MACF1 Silent p.L4562L 0.42 TCGA-2W-A8YY-01 1 39920712 39920712 T C MACF1 Silent p.D4947D 0.44 TCGA-2W-A8YY-01 1 39945559 39945559 C T MACF1 Nonsense_Mutation p.R5262* 0.44 TCGA-2W-A8YY-01 1 39945682 39945682 G A MACF1 Splice_Site p.X5302_splice 0.29 TCGA-2W-A8YY-01 1 39952549 39952549 C T MACF1 3'UTR 0.48 TCGA-2W-A8YY-01 1 40129063 40129063 C T NT5C1A Silent p.P159P 0.10 TCGA-2W-A8YY-01 1 40228862 40228862 C T BMP8B Missense_Mutation p.A321T 0.23 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 1 40235372 40235372 C T OXCT2 3'UTR 0.42 TCGA-2W-A8YY-01 1 40235534 40235534 C T OXCT2 Missense_Mutation p.R465H 0.37 deleterious(0.03) benign(0.189) TCGA-2W-A8YY-01 1 40236735 40236735 C T OXCT2 Missense_Mutation p.G65R 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 40435387 40435387 C A MFSD2A 3'UTR 0.14 TCGA-2W-A8YY-01 1 40703042 40703042 G T RLF Nonsense_Mutation p.E890* 0.26 TCGA-2W-A8YY-01 1 40733501 40733501 C A ZMPSTE24 Missense_Mutation p.S105Y 0.31 deleterious(0) possibly_damaging(0.873) TCGA-2W-A8YY-01 1 40734184 40734184 G T ZMPSTE24 Nonsense_Mutation p.E151* 0.08 TCGA-2W-A8YY-01 1 40747071 40747071 C T ZMPSTE24 Nonsense_Mutation p.R276* 0.44 TCGA-2W-A8YY-01 1 40767021 40767021 C T COL9A2 Missense_Mutation p.G635S 0.36 deleterious(0.02) probably_damaging(0.949) TCGA-2W-A8YY-01 1 40767538 40767538 G A COL9A2 Missense_Mutation p.P606S 0.29 deleterious(0.01) benign(0.348) TCGA-2W-A8YY-01 1 40769280 40769280 G A COL9A2 Silent p.G490G 0.26 TCGA-2W-A8YY-01 1 40881858 40881858 C T SMAP2 Missense_Mutation p.S231F 0.48 tolerated(0.05) possibly_damaging(0.768) TCGA-2W-A8YY-01 1 40961442 40961442 G T ZFP69 Missense_Mutation p.R431I 0.17 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 1 41006329 41006329 G T ZNF684 Missense_Mutation p.E29D 0.33 deleterious(0.04) benign(0.004) TCGA-2W-A8YY-01 1 41218920 41218920 T C NFYC Splice_Site p.X129_splice 0.50 TCGA-2W-A8YY-01 1 41978491 41978491 G A HIVEP3 Missense_Mutation p.P2134L 0.42 benign(0) TCGA-2W-A8YY-01 1 42693619 42693619 C T FOXJ3 Missense_Mutation p.D155N 0.30 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 42870257 42870257 G A RIMKLA Missense_Mutation p.R157Q 0.50 tolerated(0.06) benign(0.206) TCGA-2W-A8YY-01 1 42898848 42898848 A G ZMYND12 Missense_Mutation p.V314A 0.40 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 1 42925531 42925531 G A PPCS Silent p.E290E 0.40 TCGA-2W-A8YY-01 1 43125219 43125219 A G PPIH Missense_Mutation p.K61R 0.17 deleterious(0.01) possibly_damaging(0.502) TCGA-2W-A8YY-01 1 43133054 43133054 G A PPIH Silent p.K166K 0.22 TCGA-2W-A8YY-01 1 43200902 43200902 G A CLDN19 Intron 0.41 TCGA-2W-A8YY-01 1 43296571 43296571 G A ERMAP Missense_Mutation p.R73H 0.42 tolerated(0.6) possibly_damaging(0.594) TCGA-2W-A8YY-01 1 43308273 43308273 G A ERMAP Silent p.R266R 0.42 TCGA-2W-A8YY-01 1 43308871 43308871 G T ERMAP Missense_Mutation p.A466S 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 43315015 43315015 G A ZNF691 5'UTR 0.43 TCGA-2W-A8YY-01 1 43315150 43315150 C T ZNF691 5'UTR 0.55 TCGA-2W-A8YY-01 1 43317859 43317859 C A ZNF691 3'Flank 0.35 TCGA-2W-A8YY-01 1 43394923 43394923 G A SLC2A1 Silent p.T310T 0.31 TCGA-2W-A8YY-01 1 43630162 43630162 C A EBNA1BP2 Missense_Mutation p.K346N 0.33 deleterious(0) possibly_damaging(0.607) TCGA-2W-A8YY-01 1 43637296 43637296 T C EBNA1BP2 Silent p.E114E 0.33 TCGA-2W-A8YY-01 1 43647264 43647264 G A WDR65 Missense_Mutation p.A73T 0.69 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 43652526 43652526 G A WDR65 Missense_Mutation p.S373N 0.22 tolerated(0.41) benign(0.012) TCGA-2W-A8YY-01 1 43665104 43665104 G A WDR65 Missense_Mutation p.G491E 0.25 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 43739108 43739108 C T TMEM125 3'UTR 0.40 TCGA-2W-A8YY-01 1 43739219 43739219 C T TMEM125 3'UTR 0.33 TCGA-2W-A8YY-01 1 43770698 43770698 C T TIE1 Missense_Mutation p.R79C 0.34 deleterious(0.01) benign(0.208) TCGA-2W-A8YY-01 1 43773473 43773473 C T TIE1 Missense_Mutation p.A307V 0.46 tolerated(0.1) benign(0.069) TCGA-2W-A8YY-01 1 43785180 43785180 C A TIE1 Silent p.V1029V 0.37 TCGA-2W-A8YY-01 1 43787164 43787164 G C TIE1 Splice_Site p.X1082_splice 0.29 TCGA-2W-A8YY-01 1 43854125 43854125 A G MED8 Intron 0.39 TCGA-2W-A8YY-01 1 43881724 43881724 C T SZT2 Missense_Mutation p.R242C 0.45 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 1 43889900 43889900 G A SZT2 Silent p.L756L 0.40 TCGA-2W-A8YY-01 1 43889991 43889991 G A SZT2 Missense_Mutation p.A787T 0.30 tolerated(0.52) possibly_damaging(0.78) TCGA-2W-A8YY-01 1 43892785 43892785 G T SZT2 Missense_Mutation p.R1066L 0.24 deleterious(0) benign(0.082) TCGA-2W-A8YY-01 1 43893266 43893266 C T SZT2 Missense_Mutation p.R1165C 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 1 43902848 43902848 C T SZT2 Missense_Mutation p.A1957V 0.39 tolerated(0.11) probably_damaging(0.93) TCGA-2W-A8YY-01 1 43908155 43908155 G A SZT2 Missense_Mutation p.A2616T 0.24 tolerated(0.87) benign(0.005) TCGA-2W-A8YY-01 1 43908278 43908278 C T SZT2 Nonsense_Mutation p.R2657* 0.45 TCGA-2W-A8YY-01 1 43917447 43917447 C T SZT2 3'UTR 0.38 TCGA-2W-A8YY-01 1 44010824 44010824 C T PTPRF Silent p.G26G 0.43 TCGA-2W-A8YY-01 1 44054594 44054594 T C PTPRF Missense_Mutation p.V291A 0.32 tolerated(0.09) benign(0.027) TCGA-2W-A8YY-01 1 44056757 44056757 G A PTPRF Missense_Mutation p.R355H 0.38 deleterious(0.02) benign(0.066) TCGA-2W-A8YY-01 1 44063699 44063699 G A PTPRF Silent p.P698P 0.41 TCGA-2W-A8YY-01 1 44071017 44071017 G A PTPRF Missense_Mutation p.D1098N 0.38 tolerated(0.57) benign(0.081) TCGA-2W-A8YY-01 1 44075145 44075145 C T PTPRF Missense_Mutation p.R1317W 0.33 deleterious(0) possibly_damaging(0.807) TCGA-2W-A8YY-01 1 44085062 44085062 C T PTPRF Nonsense_Mutation p.R1584* 0.38 TCGA-2W-A8YY-01 1 44086820 44086820 C T PTPRF Missense_Mutation p.R1858C 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 44086881 44086881 G A PTPRF Missense_Mutation p.R1878H 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 44089061 44089061 C T PTPRF 3'UTR 0.33 TCGA-2W-A8YY-01 1 44149410 44149410 G A KDM4A Missense_Mutation p.R597H 0.34 deleterious(0.01) probably_damaging(0.964) TCGA-2W-A8YY-01 1 44169370 44169370 C T KDM4A Missense_Mutation p.A975V 0.46 deleterious(0) possibly_damaging(0.739) TCGA-2W-A8YY-01 1 44438171 44438171 G A DPH2 Missense_Mutation p.R477Q 0.10 deleterious(0.03) benign(0.01) TCGA-2W-A8YY-01 1 44447428 44447428 C T B4GALT2 Silent p.G156G 0.40 TCGA-2W-A8YY-01 1 44447564 44447564 C T B4GALT2 Missense_Mutation p.R202W 0.33 deleterious(0) probably_damaging(0.94) TCGA-2W-A8YY-01 1 44461304 44461304 G A CCDC24 Missense_Mutation p.C195Y 0.48 tolerated(1) benign(0.01) TCGA-2W-A8YY-01 1 44462014 44462014 C T CCDC24 3'UTR 0.58 TCGA-2W-A8YY-01 1 44466439 44466439 G A SLC6A9 Silent p.F585F 0.21 TCGA-2W-A8YY-01 1 44468260 44468260 C T SLC6A9 Missense_Mutation p.G334E 0.24 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 1 44595290 44595290 G T KLF17 Missense_Mutation p.R116I 0.31 tolerated(0.22) benign(0.005) TCGA-2W-A8YY-01 1 44687310 44687310 C T ERI3 Missense_Mutation p.D312N 0.41 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 1 44804940 44804940 C T ERI3 Missense_Mutation p.R89Q 0.37 tolerated_low_confidence(0.13) benign(0.002) TCGA-2W-A8YY-01 1 44871062 44871062 C T RNF220 5'UTR 0.35 TCGA-2W-A8YY-01 1 45079916 45079916 G A RNF220 Silent p.E235E 0.35 TCGA-2W-A8YY-01 1 45091970 45091970 C A RNF220 Missense_Mutation p.S269Y 0.22 deleterious(0) possibly_damaging(0.862) TCGA-2W-A8YY-01 1 45225990 45225990 G A KIF2C Missense_Mutation p.R469H 0.64 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 45253247 45253247 G T BEST4 Missense_Mutation p.A44D 0.16 tolerated(0.14) possibly_damaging(0.685) TCGA-2W-A8YY-01 1 45253276 45253276 C A BEST4 Missense_Mutation p.K34N 0.45 deleterious(0.05) probably_damaging(0.938) TCGA-2W-A8YY-01 1 45253344 45253344 C T BEST4 Missense_Mutation p.A12T 0.35 tolerated(0.06) possibly_damaging(0.755) TCGA-2W-A8YY-01 1 45269602 45269602 G A PLK3 Splice_Site p.X389_splice 0.27 TCGA-2W-A8YY-01 1 45270359 45270359 T C PLK3 Missense_Mutation p.S515P 0.34 tolerated(0.1) possibly_damaging(0.828) TCGA-2W-A8YY-01 1 45272199 45272199 C T TCTEX1D4 Missense_Mutation p.A48T 0.40 tolerated(0.74) possibly_damaging(0.647) TCGA-2W-A8YY-01 1 45272261 45272261 C T TCTEX1D4 Missense_Mutation p.R27Q 0.37 tolerated(0.21) benign(0.002) TCGA-2W-A8YY-01 1 45469216 45469216 G A HECTD3 Missense_Mutation p.A845V 0.37 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 45470438 45470438 G A HECTD3 Missense_Mutation p.T659M 0.40 deleterious(0.02) benign(0.379) TCGA-2W-A8YY-01 1 45478929 45478929 C A UROD Intron 0.27 TCGA-2W-A8YY-01 1 45479334 45479334 G T UROD Missense_Mutation p.E115D 0.48 deleterious(0.02) benign(0.078) TCGA-2W-A8YY-01 1 45479684 45479684 G A UROD Missense_Mutation p.R193H 0.62 tolerated(0.08) benign(0.002) TCGA-2W-A8YY-01 1 45810813 45810813 A G TESK2 Missense_Mutation p.V472A 0.41 tolerated_low_confidence(0.57) benign(0.001) TCGA-2W-A8YY-01 1 45821070 45821070 G A TESK2 Missense_Mutation p.P149S 0.42 tolerated(1) benign(0.005) TCGA-2W-A8YY-01 1 45821096 45821096 T C TESK2 Missense_Mutation p.Q140R 0.37 tolerated(0.06) probably_damaging(0.992) TCGA-2W-A8YY-01 1 45887508 45887508 C T TESK2 Missense_Mutation p.R78Q 0.36 deleterious(0.02) possibly_damaging(0.453) TCGA-2W-A8YY-01 1 45984661 45984661 C T PRDX1 Missense_Mutation p.A19T 0.40 deleterious(0.02) probably_damaging(0.975) TCGA-2W-A8YY-01 1 46072179 46072179 G A NASP Missense_Mutation p.A109T 0.32 deleterious(0.01) probably_damaging(0.986) TCGA-2W-A8YY-01 1 46072990 46072990 T C NASP Intron 0.51 TCGA-2W-A8YY-01 1 46081000 46081000 G T NASP Nonsense_Mutation p.E627* 0.42 TCGA-2W-A8YY-01 1 46093249 46093249 C T GPBP1L1 3'UTR 0.08 TCGA-2W-A8YY-01 1 46105926 46105926 C T GPBP1L1 Missense_Mutation p.V234I 0.29 tolerated(0.09) probably_damaging(0.995) TCGA-2W-A8YY-01 1 46472008 46472008 C T MAST2 Silent p.S281S 0.38 TCGA-2W-A8YY-01 1 46476461 46476461 C T MAST2 Silent p.S346S 0.41 TCGA-2W-A8YY-01 1 46489619 46489619 C T MAST2 Missense_Mutation p.R583C 0.32 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-2W-A8YY-01 1 46497149 46497149 C T MAST2 Missense_Mutation p.R1027C 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 46497199 46497199 T C MAST2 Silent p.P1043P 0.17 TCGA-2W-A8YY-01 1 46498353 46498353 G A MAST2 Missense_Mutation p.G1167D 0.15 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-2W-A8YY-01 1 46500459 46500459 C T MAST2 Missense_Mutation p.A1373V 0.55 deleterious_low_confidence(0.04) possibly_damaging(0.574) TCGA-2W-A8YY-01 1 46500814 46500814 G A MAST2 Silent p.S1491S 0.41 TCGA-2W-A8YY-01 1 46500978 46500978 C A MAST2 Missense_Mutation p.P1546H 0.36 deleterious_low_confidence(0.01) benign(0.004) TCGA-2W-A8YY-01 1 46505909 46505909 C T PIK3R3 3'UTR 0.37 TCGA-2W-A8YY-01 1 46509427 46509427 G A PIK3R3 Missense_Mutation p.T435I 0.32 deleterious(0.01) possibly_damaging(0.735) TCGA-2W-A8YY-01 1 46543187 46543187 C T PIK3R3 Missense_Mutation p.R105Q 0.39 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 1 46661591 46661591 G A POMGNT1 Silent p.H142H 0.09 TCGA-2W-A8YY-01 1 46669167 46669167 C T LURAP1 Silent p.T23T 0.39 TCGA-2W-A8YY-01 1 46685581 46685581 G A LURAP1 Missense_Mutation p.D137N 0.09 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 46744249 46744253 AGGGG - LRRC41 3'UTR 0.40 TCGA-2W-A8YY-01 1 46744261 46744261 C A LRRC41 3'UTR 0.25 TCGA-2W-A8YY-01 1 46745018 46745018 C A LRRC41 Intron 0.36 TCGA-2W-A8YY-01 1 46745238 46745238 A G LRRC41 Missense_Mutation p.F690S 0.38 deleterious(0.01) possibly_damaging(0.504) TCGA-2W-A8YY-01 1 46782246 46782246 A G UQCRH Missense_Mutation p.N89S 0.32 tolerated(0.81) benign(0.001) TCGA-2W-A8YY-01 1 46808296 46808296 C T NSUN4 Intron 0.37 TCGA-2W-A8YY-01 1 46808838 46808838 C T NSUN4 Intron 0.36 TCGA-2W-A8YY-01 1 46976192 46976192 C T DMBX1 Missense_Mutation p.R67C 0.15 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 1 46977802 46977802 G A DMBX1 Missense_Mutation p.S257N 0.36 tolerated(0.13) probably_damaging(0.918) TCGA-2W-A8YY-01 1 46978153 46978153 C T DMBX1 Missense_Mutation p.T374M 0.44 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-2W-A8YY-01 1 46978399 46978399 C A DMBX1 3'UTR 0.45 TCGA-2W-A8YY-01 1 47023361 47023361 G A MKNK1 3'UTR 0.38 TCGA-2W-A8YY-01 1 47078619 47078619 G A MOB3C Silent p.I177I 0.34 TCGA-2W-A8YY-01 1 47118262 47118262 G T ATPAF1 Silent p.S216S 0.39 TCGA-2W-A8YY-01 1 47501706 47501706 C T CYP4X1 Missense_Mutation p.A213V 0.40 tolerated(0.32) benign(0) TCGA-2W-A8YY-01 1 47533272 47533272 G T CYP4Z1 Missense_Mutation p.R37I 0.38 deleterious(0) possibly_damaging(0.766) TCGA-2W-A8YY-01 1 47611945 47611945 T C CYP4A22 Intron 0.31 TCGA-2W-A8YY-01 1 47649511 47649511 G T PDZK1IP1 3'UTR 0.50 TCGA-2W-A8YY-01 1 47685157 47685157 G A TAL1 3'UTR 0.40 TCGA-2W-A8YY-01 1 4772547 4772547 T C AJAP1 Missense_Mutation p.V206A 0.32 tolerated(0.12) possibly_damaging(0.866) TCGA-2W-A8YY-01 1 47842573 47842573 T - CMPK1 3'UTR 0.29 TCGA-2W-A8YY-01 1 47882509 47882509 G A FOXE3 Silent p.A174A 0.29 TCGA-2W-A8YY-01 1 47906210 47906210 G A FOXD2 3'UTR 0.10 TCGA-2W-A8YY-01 1 48694519 48694519 C T SLC5A9 Intron 0.35 TCGA-2W-A8YY-01 1 48703520 48703520 G A SLC5A9 Splice_Site p.X512_splice 0.42 TCGA-2W-A8YY-01 1 48705037 48705037 T C SLC5A9 Missense_Mutation p.L527P 0.11 deleterious(0.03) benign(0.397) TCGA-2W-A8YY-01 1 48999939 48999939 T C AGBL4 Missense_Mutation p.H473R 0.46 tolerated_low_confidence(1) benign(0.012) TCGA-2W-A8YY-01 1 49227082 49227082 G A BEND5 Missense_Mutation p.S96F 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.598) TCGA-2W-A8YY-01 1 50659501 50659501 C T ELAVL4 Missense_Mutation p.P157L 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 51061865 51061865 G T FAF1 Silent p.L256L 0.43 TCGA-2W-A8YY-01 1 51436039 51436039 G T CDKN2C 5'UTR 0.46 TCGA-2W-A8YY-01 1 51439963 51439963 C T CDKN2C 3'UTR 0.33 TCGA-2W-A8YY-01 1 51611426 51611426 A G C1orf185 Missense_Mutation p.I97V 0.34 tolerated(0.4) benign(0.005) TCGA-2W-A8YY-01 1 51738119 51738119 G A RNF11 3'UTR 0.46 TCGA-2W-A8YY-01 1 51820218 51820218 G T EPS15 3'UTR 0.35 TCGA-2W-A8YY-01 1 51822495 51822495 G A EPS15 Silent p.I856I 0.55 TCGA-2W-A8YY-01 1 51871620 51871620 C T EPS15 Missense_Mutation p.G545D 0.42 tolerated(0.13) benign(0.038) TCGA-2W-A8YY-01 1 52082602 52082602 G A OSBPL9 5'Flank 0.38 TCGA-2W-A8YY-01 1 52250247 52250247 G A OSBPL9 Missense_Mutation p.E618K 0.27 tolerated(0.08) possibly_damaging(0.86) TCGA-2W-A8YY-01 1 52254984 52254984 C T NRD1 Missense_Mutation p.C1195Y 0.43 deleterious(0.01) benign(0.02) TCGA-2W-A8YY-01 1 52385671 52385671 C T RAB3B Silent p.S196S 0.37 TCGA-2W-A8YY-01 1 52442653 52442653 G A RAB3B Missense_Mutation p.T46M 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-2W-A8YY-01 1 52498835 52498835 G T KTI12 Missense_Mutation p.S200Y 0.10 tolerated(0.07) possibly_damaging(0.736) TCGA-2W-A8YY-01 1 52552842 52552842 T G BTF3L4 3'UTR 0.24 TCGA-2W-A8YY-01 1 52703747 52703747 A G ZFYVE9 Missense_Mutation p.K220E 0.36 tolerated_low_confidence(0.34) benign(0.017) TCGA-2W-A8YY-01 1 52811887 52811887 C T ZFYVE9 Silent p.I1424I 0.41 TCGA-2W-A8YY-01 1 52824964 52824964 G A CC2D1B Nonsense_Mutation p.R362* 0.31 TCGA-2W-A8YY-01 1 52826775 52826775 G A CC2D1B Silent p.D116D 0.43 TCGA-2W-A8YY-01 1 52850274 52850274 A G ORC1 Missense_Mutation p.V568A 0.50 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 1 52854139 52854139 G A ORC1 Missense_Mutation p.T453I 0.40 deleterious(0.02) benign(0.078) TCGA-2W-A8YY-01 1 52880504 52880504 C T PRPF38A Missense_Mutation p.R274W 0.33 deleterious(0) unknown(0) TCGA-2W-A8YY-01 1 52882777 52882777 G T PRPF38A 3'UTR 0.47 TCGA-2W-A8YY-01 1 52891130 52891130 C T ZCCHC11 Silent p.P1587P 0.48 TCGA-2W-A8YY-01 1 52947216 52947216 C T ZCCHC11 Missense_Mutation p.S576N 0.44 tolerated(0.51) probably_damaging(0.914) TCGA-2W-A8YY-01 1 53153573 53153573 C T COA7 Missense_Mutation p.C172Y 0.31 tolerated(0.11) benign(0.003) TCGA-2W-A8YY-01 1 53236849 53236849 T C ZYG11B Silent p.D118D 0.47 TCGA-2W-A8YY-01 1 53237067 53237067 T C ZYG11B Missense_Mutation p.L191S 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 53237429 53237429 G A ZYG11B Missense_Mutation p.G312S 0.39 tolerated(0.55) benign(0.439) TCGA-2W-A8YY-01 1 53347166 53347166 G A ZYG11A Silent p.E591E 0.35 TCGA-2W-A8YY-01 1 53516364 53516364 C T SCP2 Silent p.N544N 0.30 TCGA-2W-A8YY-01 1 53544106 53544106 G A PODN Silent p.P356P 0.10 TCGA-2W-A8YY-01 1 53558364 53558364 A C SLC1A7 Missense_Mutation p.V298G 0.42 deleterious(0) benign(0.154) TCGA-2W-A8YY-01 1 53712273 53712273 A G LRP8 3'UTR 0.43 TCGA-2W-A8YY-01 1 53715081 53715081 G A LRP8 Missense_Mutation p.L942F 0.27 tolerated_low_confidence(0.09) probably_damaging(0.976) TCGA-2W-A8YY-01 1 53736900 53736900 G A LRP8 Silent p.G375G 0.30 TCGA-2W-A8YY-01 1 53904416 53904416 G A SLC25A3P1 RNA 0.25 TCGA-2W-A8YY-01 1 53980366 53980366 C T GLIS1 Silent p.P430P 0.33 TCGA-2W-A8YY-01 1 53990557 53990557 G A GLIS1 Missense_Mutation p.P321S 0.35 deleterious(0) benign(0.061) TCGA-2W-A8YY-01 1 54534444 54534444 G A TCEANC2 Missense_Mutation p.E40K 0.32 deleterious(0) possibly_damaging(0.831) TCGA-2W-A8YY-01 1 54562639 54562639 C T TCEANC2 3'UTR 0.23 TCGA-2W-A8YY-01 1 54649861 54649861 G A CYB5RL Silent p.F171F 0.35 TCGA-2W-A8YY-01 1 54675804 54675804 G A MRPL37 Missense_Mutation p.G278R 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 54690982 54690982 G A SSBP3 3'Flank 0.43 TCGA-2W-A8YY-01 1 54692514 54692514 A G SSBP3 3'UTR 0.44 TCGA-2W-A8YY-01 1 54694497 54694497 G A SSBP3 Silent p.F310F 0.37 TCGA-2W-A8YY-01 1 54870307 54870307 G A SSBP3 Nonsense_Mutation p.R45* 0.35 TCGA-2W-A8YY-01 1 54871700 54871700 C T SSBP3 5'UTR 0.37 TCGA-2W-A8YY-01 1 55096499 55096499 C T ACOT11 Silent p.S574S 0.51 TCGA-2W-A8YY-01 1 55223663 55223663 C T PARS2 Missense_Mutation p.G391E 0.35 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 1 55224209 55224209 A G PARS2 Missense_Mutation p.M209T 0.34 deleterious(0) possibly_damaging(0.903) TCGA-2W-A8YY-01 1 55252699 55252699 G T TTC22 Missense_Mutation p.F263L 0.39 tolerated(0.1) benign(0.365) TCGA-2W-A8YY-01 1 55280604 55280604 T C C1orf177 Silent p.S314S 0.38 TCGA-2W-A8YY-01 1 55337163 55337163 G A DHCR24 Missense_Mutation p.R246W 0.30 tolerated(0.17) possibly_damaging(0.586) TCGA-2W-A8YY-01 1 55457634 55457634 C T TMEM61 Missense_Mutation p.A164V 0.45 deleterious(0.03) probably_damaging(0.971) TCGA-2W-A8YY-01 1 55472684 55472684 C T BSND Missense_Mutation p.P96L 0.26 deleterious(0.04) benign(0.374) TCGA-2W-A8YY-01 1 55527158 55527158 G A PCSK9 Missense_Mutation p.A598T 0.39 deleterious(0.01) benign(0.213) TCGA-2W-A8YY-01 1 55534656 55534656 T C USP24 3'UTR 0.43 TCGA-2W-A8YY-01 1 55613409 55613409 G A USP24 Silent p.I677I 0.28 TCGA-2W-A8YY-01 1 56977797 56977797 G A PPAP2B Nonsense_Mutation p.R221* 0.43 TCGA-2W-A8YY-01 1 57372377 57372377 C T C8A Silent p.G378G 0.40 TCGA-2W-A8YY-01 1 57411641 57411641 T G C8B Silent p.R320R 0.24 TCGA-2W-A8YY-01 1 59137602 59137603 - T MYSM1 Frame_Shift_Ins p.R534Kfs*11 0.33 TCGA-2W-A8YY-01 1 59249682 59249682 G A JUN 5'UTR 0.31 TCGA-2W-A8YY-01 1 5935076 5935076 C T NPHP4 Missense_Mutation p.A968T 0.31 tolerated(0.55) benign(0.007) TCGA-2W-A8YY-01 1 6007258 6007258 C T NPHP4 Missense_Mutation p.R342H 0.17 tolerated(0.14) benign(0.071) TCGA-2W-A8YY-01 1 60228394 60228394 C T FGGY 3'UTR 0.50 TCGA-2W-A8YY-01 1 6038434 6038434 G A NPHP4 Nonsense_Mutation p.R59* 0.35 TCGA-2W-A8YY-01 1 60476095 60476095 A C C1orf87 Silent p.A387A 0.36 TCGA-2W-A8YY-01 1 6111756 6111756 C T KCNAB2 Missense_Mutation p.R54C 0.44 deleterious_low_confidence(0.02) benign(0.003) TCGA-2W-A8YY-01 1 6142328 6142328 C T KCNAB2 Missense_Mutation p.A125V 0.12 deleterious(0.01) benign(0.114) TCGA-2W-A8YY-01 1 61553906 61553906 G A NFIA Missense_Mutation p.R83Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 6166746 6166746 C T CHD5 Missense_Mutation p.R1891Q 0.54 deleterious(0.01) probably_damaging(0.951) TCGA-2W-A8YY-01 1 6172981 6172981 C T CHD5 Missense_Mutation p.E1664K 0.44 tolerated(0.4) benign(0.001) TCGA-2W-A8YY-01 1 6204182 6204182 G A CHD5 Silent p.I612I 0.13 TCGA-2W-A8YY-01 1 62234986 62234986 G A INADL Missense_Mutation p.R139Q 0.41 deleterious(0.01) probably_damaging(0.924) TCGA-2W-A8YY-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.35 TCGA-2W-A8YY-01 1 62613980 62613980 G A INADL Missense_Mutation p.A1766T 0.35 deleterious(0.02) benign(0.082) TCGA-2W-A8YY-01 1 6266732 6266732 C T RNF207 Missense_Mutation p.A46V 0.38 deleterious(0) possibly_damaging(0.772) TCGA-2W-A8YY-01 1 62672311 62672311 T C L1TD1 Missense_Mutation p.V4A 0.42 tolerated_low_confidence(0.06) unknown(0) TCGA-2W-A8YY-01 1 6267565 6267565 C T RNF207 Silent p.S106S 0.42 TCGA-2W-A8YY-01 1 62676613 62676613 G T L1TD1 Nonsense_Mutation p.E723* 0.38 TCGA-2W-A8YY-01 1 6272396 6272396 C T RNF207 Silent p.L468L 0.52 TCGA-2W-A8YY-01 1 62739285 62739285 A G KANK4 Silent p.T497T 0.33 TCGA-2W-A8YY-01 1 62740120 62740120 C T KANK4 Missense_Mutation p.R219Q 0.36 tolerated(0.96) benign(0) TCGA-2W-A8YY-01 1 62747267 62747267 C T KANK4 5'UTR 0.37 TCGA-2W-A8YY-01 1 6279434 6279434 C T RNF207 Silent p.G624G 0.33 TCGA-2W-A8YY-01 1 62910599 62910599 G A USP1 Missense_Mutation p.E250K 0.48 tolerated(0.21) benign(0.155) TCGA-2W-A8YY-01 1 62913034 62913034 G A USP1 Silent p.E424E 0.14 TCGA-2W-A8YY-01 1 6292072 6292072 C T ICMT Missense_Mutation p.V188M 0.27 deleterious(0.03) benign(0.227) TCGA-2W-A8YY-01 1 62960035 62960035 A G DOCK7 Missense_Mutation p.C1679R 0.42 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 1 62993910 62993910 C T DOCK7 Missense_Mutation p.S1252N 0.39 tolerated(0.29) benign(0.004) TCGA-2W-A8YY-01 1 63063539 63063539 G T ANGPTL3 Missense_Mutation p.R101I 0.31 deleterious(0.02) benign(0.005) TCGA-2W-A8YY-01 1 63069662 63069662 G T ANGPTL3 Missense_Mutation p.E318D 0.41 tolerated(0.07) possibly_damaging(0.643) TCGA-2W-A8YY-01 1 63070426 63070426 T C ANGPTL3 Silent p.L441L 0.28 TCGA-2W-A8YY-01 1 63090975 63090975 C T DOCK7 Silent p.T460T 0.33 TCGA-2W-A8YY-01 1 6313990 6313990 C T GPR153 Missense_Mutation p.A192T 0.32 deleterious(0.04) possibly_damaging(0.849) TCGA-2W-A8YY-01 1 6314833 6314833 G T GPR153 Missense_Mutation p.L45M 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 6324567 6324567 G A ACOT7 3'UTR 0.45 TCGA-2W-A8YY-01 1 63307219 63307219 G A ATG4C Splice_Site p.X403_splice 0.38 TCGA-2W-A8YY-01 1 63788792 63788792 G T FOXD3 Missense_Mutation p.E21D 0.42 tolerated(0.23) benign(0.217) TCGA-2W-A8YY-01 1 63790018 63790018 C T FOXD3 Missense_Mutation p.A430V 0.40 tolerated_low_confidence(0.2) unknown(0) TCGA-2W-A8YY-01 1 63836582 63836582 G A ALG6 5'UTR 0.37 TCGA-2W-A8YY-01 1 63998360 63998360 G A EFCAB7 Missense_Mutation p.R140Q 0.35 tolerated(0.62) benign(0.002) TCGA-2W-A8YY-01 1 64022787 64022787 C A EFCAB7 Missense_Mutation p.S406Y 0.31 deleterious(0.03) possibly_damaging(0.615) TCGA-2W-A8YY-01 1 64125913 64125913 A G PGM1 3'Flank 0.50 TCGA-2W-A8YY-01 1 64515582 64515582 A G ROR1 Missense_Mutation p.Y128C 0.35 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 1 64605901 64605901 C T ROR1 Silent p.S240S 0.25 TCGA-2W-A8YY-01 1 64624824 64624824 C T ROR1 Silent p.H445H 0.45 TCGA-2W-A8YY-01 1 64643318 64643318 C T ROR1 Missense_Mutation p.H532Y 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 65047897 65047897 A C CACHD1 Missense_Mutation p.K56T 0.11 deleterious(0.01) possibly_damaging(0.85) TCGA-2W-A8YY-01 1 65098292 65098292 G A CACHD1 Missense_Mutation p.V168I 0.29 tolerated(0.25) benign(0.02) TCGA-2W-A8YY-01 1 65129452 65129452 C T CACHD1 Missense_Mutation p.R625C 0.21 deleterious(0.01) possibly_damaging(0.893) TCGA-2W-A8YY-01 1 6520830 6520830 G A ESPN 3'UTR 0.41 TCGA-2W-A8YY-01 1 6521553 6521553 G A TNFRSF25 Missense_Mutation p.R408C 0.52 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 1 6521716 6521716 C T TNFRSF25 Silent p.A353A 0.44 TCGA-2W-A8YY-01 1 6527269 6527269 T C PLEKHG5 3'Flank 0.43 TCGA-2W-A8YY-01 1 6528317 6528317 C T PLEKHG5 Missense_Mutation p.R939H 0.39 deleterious_low_confidence(0.02) benign(0.191) TCGA-2W-A8YY-01 1 6528571 6528571 G A PLEKHG5 Silent p.F854F 0.46 TCGA-2W-A8YY-01 1 65303763 65303763 G A JAK1 Nonsense_Mutation p.Q998* 0.22 TCGA-2W-A8YY-01 1 6531132 6531132 C T PLEKHG5 Missense_Mutation p.R516H 0.49 tolerated(0.07) probably_damaging(0.984) TCGA-2W-A8YY-01 1 65312354 65312354 G A JAK1 Silent p.G655G 0.26 TCGA-2W-A8YY-01 1 65325833 65325833 G - JAK1 Frame_Shift_Del p.P430Rfs*2 0.31 TCGA-2W-A8YY-01 1 65332695 65332695 C T JAK1 Missense_Mutation p.G282S 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 1 65334992 65334992 A G JAK1 Splice_Site p.X216_splice 0.19 TCGA-2W-A8YY-01 1 65335064 65335064 C T JAK1 Missense_Mutation p.A193T 0.27 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 65775426 65775426 C T DNAJC6 5'UTR 0.29 TCGA-2W-A8YY-01 1 6579660 6579660 G A NOL9 3'Flank 0.33 TCGA-2W-A8YY-01 1 65864556 65864556 C T DNAJC6 Missense_Mutation p.A700V 0.51 tolerated(0.13) benign(0.029) TCGA-2W-A8YY-01 1 66083806 66083806 C A LEPR Missense_Mutation p.S791Y 0.30 deleterious(0) benign(0.211) TCGA-2W-A8YY-01 1 66723334 66723334 G A PDE4B Missense_Mutation p.G161S 0.36 deleterious(0.04) benign(0.271) TCGA-2W-A8YY-01 1 6681476 6681476 G A PHF13 Missense_Mutation p.D228N 0.28 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 1 6683542 6683542 G A PHF13 3'UTR 0.49 TCGA-2W-A8YY-01 1 6688693 6688693 G A THAP3 Missense_Mutation p.R70H 0.33 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 1 6695643 6695643 A C DNAJC11 3'UTR 0.40 TCGA-2W-A8YY-01 1 67194953 67194953 C T SGIP1 Silent p.I583I 0.38 TCGA-2W-A8YY-01 1 67199531 67199531 A G SGIP1 Missense_Mutation p.T667A 0.50 deleterious(0.01) benign(0.127) TCGA-2W-A8YY-01 1 67243157 67243157 C T TCTEX1D1 3'UTR 0.25 TCGA-2W-A8YY-01 1 67243271 67243271 T - TCTEX1D1 3'UTR 0.29 TCGA-2W-A8YY-01 1 67288122 67288122 G A WDR78 Silent p.C806C 0.48 TCGA-2W-A8YY-01 1 67648624 67648624 A G IL23R Missense_Mutation p.Y158C 0.26 deleterious(0) probably_damaging(0.966) TCGA-2W-A8YY-01 1 67816690 67816690 T G IL12RB2 Missense_Mutation p.N392K 0.32 tolerated(0.4) benign(0.028) TCGA-2W-A8YY-01 1 67845723 67845723 G A IL12RB2 Missense_Mutation p.R591Q 0.41 tolerated(0.5) benign(0.015) TCGA-2W-A8YY-01 1 68171040 68171040 A G GNG12 3'UTR 0.38 TCGA-2W-A8YY-01 1 68171151 68171151 T - GNG12 Frame_Shift_Del p.T68Lfs*22 0.32 TCGA-2W-A8YY-01 1 68512645 68512645 G A DIRAS3 Silent p.F112F 0.38 TCGA-2W-A8YY-01 1 68564363 68564363 G A WLS Silent p.S528S 0.29 TCGA-2W-A8YY-01 1 68949654 68949654 C T DEPDC1 Missense_Mutation p.E297K 0.39 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 1 68954173 68954173 A G DEPDC1 Missense_Mutation p.L202S 0.46 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 70646893 70646893 C T LRRC40 Splice_Site p.X180_splice 0.12 TCGA-2W-A8YY-01 1 70697485 70697485 C T SRSF11 Intron 0.38 TCGA-2W-A8YY-01 1 70716375 70716375 G A SRSF11 Missense_Mutation p.G448S 0.26 tolerated_low_confidence(0.7) benign(0.294) TCGA-2W-A8YY-01 1 70716669 70716669 C T SRSF11 3'UTR 0.54 TCGA-2W-A8YY-01 1 71512482 71512482 C G PTGER3 Missense_Mutation p.C260S 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 1 74649280 74649280 A G LRRIQ3 Missense_Mutation p.F30S 0.11 deleterious(0) probably_damaging(0.925) TCGA-2W-A8YY-01 1 74670817 74670817 C T FPGT Silent p.T362T 0.42 TCGA-2W-A8YY-01 1 74671093 74671093 T C FPGT Silent p.C454C 0.11 TCGA-2W-A8YY-01 1 74819697 74819697 G A FPGT-TNNI3K Missense_Mutation p.R468H 0.15 tolerated(0.18) probably_damaging(0.997) TCGA-2W-A8YY-01 1 74929125 74929125 C T TNNI3K Missense_Mutation p.A772V 0.38 tolerated(0.21) possibly_damaging(0.508) TCGA-2W-A8YY-01 1 74957786 74957786 G A TNNI3K Missense_Mutation p.M830I 0.45 tolerated_low_confidence(0.07) benign(0.004) TCGA-2W-A8YY-01 1 75037397 75037397 C A C1orf173 Nonsense_Mutation p.G1333* 0.37 TCGA-2W-A8YY-01 1 75107031 75107031 G A C1orf173 Missense_Mutation p.S143F 0.40 deleterious(0) possibly_damaging(0.898) TCGA-2W-A8YY-01 1 75114988 75114988 G A C1orf173 Missense_Mutation p.A12V 0.33 deleterious(0) probably_damaging(0.963) TCGA-2W-A8YY-01 1 75602303 75602303 T C LHX8 Missense_Mutation p.S12P 0.28 deleterious_low_confidence(0.05) benign(0.037) TCGA-2W-A8YY-01 1 76215180 76215180 T G ACADM Missense_Mutation p.V266G 0.33 deleterious(0) probably_damaging(0.946) TCGA-2W-A8YY-01 1 76254856 76254856 T C RABGGTB Missense_Mutation p.S42P 0.42 deleterious(0) possibly_damaging(0.474) TCGA-2W-A8YY-01 1 76257235 76257235 T C RABGGTB Silent p.G186G 0.29 TCGA-2W-A8YY-01 1 76384750 76384750 G A ASB17 Missense_Mutation p.L259F 0.39 deleterious(0.02) probably_damaging(0.961) TCGA-2W-A8YY-01 1 76387896 76387896 T C ASB17 Missense_Mutation p.T184A 0.47 tolerated(0.12) benign(0) TCGA-2W-A8YY-01 1 77516031 77516031 G A ST6GALNAC5 Missense_Mutation p.V254M 0.41 probably_damaging(0.995) TCGA-2W-A8YY-01 1 77528784 77528784 C T ST6GALNAC5 Nonsense_Mutation p.R302* 0.44 TCGA-2W-A8YY-01 1 78181484 78181484 A G USP33 Missense_Mutation p.V694A 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 78201823 78201823 A G USP33 Silent p.N155N 0.31 TCGA-2W-A8YY-01 1 7827958 7827958 T C CAMTA1 3'UTR 0.10 TCGA-2W-A8YY-01 1 7839729 7839729 C A VAMP3 3'UTR 0.32 TCGA-2W-A8YY-01 1 7844913 7844913 C T PER3 5'UTR 0.32 TCGA-2W-A8YY-01 1 78560669 78560669 A - GIPC2 Frame_Shift_Del p.T155Qfs*11 0.34 TCGA-2W-A8YY-01 1 78601341 78601341 G A GIPC2 Missense_Mutation p.E288K 0.22 tolerated(0.22) benign(0.019) TCGA-2W-A8YY-01 1 7880657 7880657 C T PER3 Silent p.C630C 0.40 TCGA-2W-A8YY-01 1 7903921 7903921 T C UTS2 3'Flank 0.43 TCGA-2W-A8YY-01 1 79125147 79125147 C T IFI44 Nonsense_Mutation p.R331* 0.38 TCGA-2W-A8YY-01 1 79129529 79129529 T C IFI44 3'UTR 0.30 TCGA-2W-A8YY-01 1 8045017 8045017 C A PARK7 Missense_Mutation p.P158H 0.18 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 8073831 8073831 G A ERRFI1 Silent p.S276S 0.38 TCGA-2W-A8YY-01 1 8073984 8073984 C T ERRFI1 Silent p.V225V 0.40 TCGA-2W-A8YY-01 1 809815 809815 T G FAM41C 5'Flank 0.36 TCGA-2W-A8YY-01 1 82372776 82372776 C T LPHN2 Nonsense_Mutation p.R50* 0.25 TCGA-2W-A8YY-01 1 82452656 82452656 T C LPHN2 Intron 0.24 TCGA-2W-A8YY-01 1 82456341 82456341 G T LPHN2 Missense_Mutation p.D1242Y 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.894) TCGA-2W-A8YY-01 1 82456363 82456363 C A LPHN2 Missense_Mutation p.A1249D 0.40 tolerated_low_confidence(0.36) benign(0.438) TCGA-2W-A8YY-01 1 82456821 82456821 A G LPHN2 Missense_Mutation p.S1402G 0.31 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-2W-A8YY-01 1 82457701 82457701 G T LPHN2 3'UTR 0.30 TCGA-2W-A8YY-01 1 8384485 8384485 G A SLC45A1 Silent p.S32S 0.48 TCGA-2W-A8YY-01 1 8384590 8384590 G A SLC45A1 Silent p.P67P 0.31 TCGA-2W-A8YY-01 1 8386070 8386070 A C SLC45A1 Missense_Mutation p.D228A 0.54 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 1 8414181 8414181 G T RERE 3'UTR 0.35 TCGA-2W-A8YY-01 1 84372133 84372133 C T TTLL7 Missense_Mutation p.R669Q 0.38 tolerated(0.62) benign(0.002) TCGA-2W-A8YY-01 1 84701346 84701346 T C PRKACB 3'UTR 0.32 TCGA-2W-A8YY-01 1 84701668 84701668 C T PRKACB 3'UTR 0.43 TCGA-2W-A8YY-01 1 84810756 84810756 C A SAMD13 Intron 0.61 TCGA-2W-A8YY-01 1 84850359 84850360 - T UOX RNA 0.25 TCGA-2W-A8YY-01 1 84956156 84956156 G A RPF1 Splice_Site p.X206_splice 0.24 TCGA-2W-A8YY-01 1 84961998 84961998 C A RPF1 Missense_Mutation p.S318Y 0.35 deleterious(0.02) possibly_damaging(0.775) TCGA-2W-A8YY-01 1 85112994 85112994 C T SSX2IP 3'UTR 0.10 TCGA-2W-A8YY-01 1 85331150 85331150 G A LPAR3 Silent p.N218N 0.33 TCGA-2W-A8YY-01 1 85397065 85397065 C A MCOLN2 Missense_Mutation p.D508Y 0.37 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 1 85484838 85484838 G A MCOLN3 Missense_Mutation p.P544S 0.36 tolerated(1) benign(0) TCGA-2W-A8YY-01 1 8555174 8555174 G A RERE Silent p.D351D 0.42 TCGA-2W-A8YY-01 1 85587455 85587455 G T WDR63 Missense_Mutation p.D647Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 1 85656422 85656422 A G SYDE2 Silent p.N253N 0.41 TCGA-2W-A8YY-01 1 85666192 85666192 C T SYDE2 Missense_Mutation p.G163E 0.40 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-2W-A8YY-01 1 86196251 86196251 C T COL24A1 Missense_Mutation p.S1708N 0.41 deleterious(0.02) benign(0.331) TCGA-2W-A8YY-01 1 86200585 86200585 G A COL24A1 Silent p.T1615T 0.28 TCGA-2W-A8YY-01 1 86848042 86848042 C T ODF2L Splice_Site p.X170_splice 0.30 TCGA-2W-A8YY-01 1 86890055 86890055 G A CLCA2 Missense_Mutation p.G42E 0.33 deleterious(0.03) benign(0.257) TCGA-2W-A8YY-01 1 86894167 86894167 G A CLCA2 Missense_Mutation p.G131R 0.27 tolerated(0.18) probably_damaging(0.945) TCGA-2W-A8YY-01 1 86934685 86934685 T C CLCA1 Silent p.L11L 0.37 TCGA-2W-A8YY-01 1 86942163 86942163 C T CLCA1 Nonsense_Mutation p.R162* 0.45 TCGA-2W-A8YY-01 1 87029441 87029441 C T CLCA4 Silent p.I182I 0.28 TCGA-2W-A8YY-01 1 87120291 87120291 T C RP4-651E10.4 Intron 0.22 TCGA-2W-A8YY-01 1 87209420 87209420 T G SH3GLB1 3'Flank 0.41 TCGA-2W-A8YY-01 1 87212860 87212860 T C SH3GLB1 3'Flank 0.37 TCGA-2W-A8YY-01 1 87212904 87212904 T C SH3GLB1 3'Flank 0.11 TCGA-2W-A8YY-01 1 874450 874450 C - SAMD11 Frame_Shift_Del p.R156Vfs*44 0.16 TCGA-2W-A8YY-01 1 87538658 87538658 C T HS2ST1 Nonsense_Mutation p.R56* 0.11 TCGA-2W-A8YY-01 1 87569268 87569268 C T HS2ST1 Silent p.R280R 0.09 TCGA-2W-A8YY-01 1 87598330 87598330 C A RP5-1052I5.2 Intron 0.25 TCGA-2W-A8YY-01 1 87810858 87810858 A G LMO4 3'UTR 0.25 TCGA-2W-A8YY-01 1 883871 883871 C T NOC2L Missense_Mutation p.R519Q 0.39 deleterious(0.02) benign(0.109) TCGA-2W-A8YY-01 1 89236122 89236122 G A PKN2 Missense_Mutation p.V198I 0.30 tolerated(0.19) benign(0.033) TCGA-2W-A8YY-01 1 89250336 89250336 C T PKN2 Missense_Mutation p.R334C 0.39 tolerated(0.12) benign(0.134) TCGA-2W-A8YY-01 1 89270151 89270151 T - PKN2 Frame_Shift_Del p.L455* 0.23 TCGA-2W-A8YY-01 1 89273214 89273214 C T PKN2 Missense_Mutation p.S646F 0.33 tolerated(0.06) benign(0.003) TCGA-2W-A8YY-01 1 89448585 89448585 G A RBMXL1 Missense_Mutation p.R309C 0.36 tolerated(0.12) benign(0.003) TCGA-2W-A8YY-01 1 89448944 89448944 C T RBMXL1 Missense_Mutation p.S189N 0.37 tolerated(0.77) benign(0.013) TCGA-2W-A8YY-01 1 89520858 89520858 G A GBP1 Missense_Mutation p.S470F 0.30 deleterious(0.03) possibly_damaging(0.905) TCGA-2W-A8YY-01 1 89583276 89583276 C T GBP2 Silent p.S203S 0.46 TCGA-2W-A8YY-01 1 89651021 89651021 C T GBP4 Missense_Mutation p.M613I 0.32 tolerated(0.23) benign(0) TCGA-2W-A8YY-01 1 89727991 89727991 C A GBP5 Missense_Mutation p.R520I 0.41 deleterious(0.02) benign(0.105) TCGA-2W-A8YY-01 1 897371 897371 C A KLHL17 Missense_Mutation p.Q219K 0.41 tolerated(0.14) possibly_damaging(0.743) TCGA-2W-A8YY-01 1 897410 897410 C T KLHL17 Silent p.L232L 0.23 TCGA-2W-A8YY-01 1 89847347 89847347 G T GBP6 Missense_Mutation p.E322D 0.22 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 1 89849833 89849833 G T GBP6 Missense_Mutation p.E550D 0.35 tolerated(0.23) benign(0.072) TCGA-2W-A8YY-01 1 90049861 90049861 G A LRRC8B Missense_Mutation p.R551Q 0.36 deleterious(0.01) benign(0.273) TCGA-2W-A8YY-01 1 90058620 90058620 C T LRRC8B 3'UTR 0.33 TCGA-2W-A8YY-01 1 90178656 90178656 C T LRRC8C Missense_Mutation p.S176F 0.10 deleterious(0) possibly_damaging(0.694) TCGA-2W-A8YY-01 1 9030962 9030962 A G CA6 Missense_Mutation p.N256D 0.23 tolerated(0.09) benign(0.095) TCGA-2W-A8YY-01 1 9034687 9034687 C T CA6 3'Flank 0.44 TCGA-2W-A8YY-01 1 905909 905909 C T PLEKHN1 Silent p.S113S 0.48 TCGA-2W-A8YY-01 1 9070246 9070246 A G SLC2A7 Missense_Mutation p.C358R 0.49 deleterious(0.01) probably_damaging(0.976) TCGA-2W-A8YY-01 1 908603 908603 G A PLEKHN1 Missense_Mutation p.R397Q 0.09 tolerated(0.69) benign(0.024) TCGA-2W-A8YY-01 1 91182630 91182630 C T BARHL2 Silent p.A41A 0.37 TCGA-2W-A8YY-01 1 91406800 91406800 A G ZNF644 Silent p.G37G 0.47 TCGA-2W-A8YY-01 1 915593 915593 G A C1orf170 Missense_Mutation p.R179C 0.30 deleterious(0.03) benign(0.004) TCGA-2W-A8YY-01 1 9164566 9164566 G A GPR157 Missense_Mutation p.P307L 0.14 tolerated(0.17) benign(0.005) TCGA-2W-A8YY-01 1 9165667 9165667 C T GPR157 Missense_Mutation p.D224N 0.33 tolerated(0.11) benign(0.143) TCGA-2W-A8YY-01 1 91841220 91841220 C A HFM1 Missense_Mutation p.R487I 0.11 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 91851222 91851222 C T HFM1 Missense_Mutation p.A222T 0.28 tolerated_low_confidence(0.2) benign(0.016) TCGA-2W-A8YY-01 1 92174267 92174267 G A TGFBR3 Missense_Mutation p.T747M 0.34 deleterious(0.03) probably_damaging(0.966) TCGA-2W-A8YY-01 1 92200395 92200395 C T TGFBR3 Missense_Mutation p.G169E 0.41 tolerated(0.33) benign(0.103) TCGA-2W-A8YY-01 1 92441858 92441858 G T BRDT Nonsense_Mutation p.E161* 0.33 TCGA-2W-A8YY-01 1 92515885 92515885 C T EPHX4 Nonsense_Mutation p.R206* 0.40 TCGA-2W-A8YY-01 1 92515935 92515935 A G EPHX4 Missense_Mutation p.I222M 0.27 tolerated(0.22) benign(0.008) TCGA-2W-A8YY-01 1 92573538 92573538 A - BTBD8 Frame_Shift_Del p.K215Nfs*10 0.25 TCGA-2W-A8YY-01 1 92737168 92737168 A C GLMN Missense_Mutation p.I259M 0.38 tolerated(0.11) benign(0.305) TCGA-2W-A8YY-01 1 92940353 92940353 C A GFI1 3'UTR 0.31 TCGA-2W-A8YY-01 1 92979505 92979506 - T EVI5 Frame_Shift_Ins p.R714Kfs*10 0.32 TCGA-2W-A8YY-01 1 93070916 93070916 C T EVI5 Missense_Mutation p.S657N 0.36 tolerated(0.28) benign(0.276) TCGA-2W-A8YY-01 1 93101846 93101846 C A EVI5 Missense_Mutation p.E464D 0.36 deleterious(0.01) possibly_damaging(0.53) TCGA-2W-A8YY-01 1 93168973 93168973 C A EVI5 Missense_Mutation p.E225D 0.13 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 1 9322144 9322144 G A H6PD Missense_Mutation p.G258S 0.50 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 1 9323704 9323704 G T H6PD Missense_Mutation p.K384N 0.31 tolerated(0.52) benign(0.005) TCGA-2W-A8YY-01 1 9324203 9324203 C T H6PD Nonsense_Mutation p.R551* 0.40 TCGA-2W-A8YY-01 1 93302908 93302908 C T RPL5 Intron 0.44 TCGA-2W-A8YY-01 1 93307481 93307481 A G RPL5 3'UTR 0.20 TCGA-2W-A8YY-01 1 93594890 93594890 C T MTF2 Missense_Mutation p.R349C 0.41 deleterious(0.03) benign(0.181) TCGA-2W-A8YY-01 1 93704927 93704927 A G CCDC18 Missense_Mutation p.I941M 0.45 deleterious(0.01) benign(0.127) TCGA-2W-A8YY-01 1 94020035 94020035 C T FNBP1L 3'UTR 0.49 TCGA-2W-A8YY-01 1 94668094 94668094 C T ARHGAP29 Intron 0.42 TCGA-2W-A8YY-01 1 94685945 94685945 C T ARHGAP29 Missense_Mutation p.C70Y 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 1 94955309 94955309 C T ABCD3 Nonsense_Mutation p.Q396* 0.37 TCGA-2W-A8YY-01 1 94994950 94994950 C T F3 3'UTR 0.31 TCGA-2W-A8YY-01 1 95657191 95657191 G A TMEM56 Missense_Mutation p.V187M 0.35 deleterious(0.03) possibly_damaging(0.605) TCGA-2W-A8YY-01 1 95710303 95710303 A G RWDD3 Intron 0.35 TCGA-2W-A8YY-01 1 95712345 95712345 G A TMEM56-RWDD3 3'Flank 0.33 TCGA-2W-A8YY-01 1 9640021 9640021 C A SLC25A33 Silent p.G164G 0.47 TCGA-2W-A8YY-01 1 9640107 9640107 C T SLC25A33 Missense_Mutation p.S193L 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 1 9661280 9661280 C T TMEM201 Missense_Mutation p.P242S 0.35 tolerated(0.32) possibly_damaging(0.661) TCGA-2W-A8YY-01 1 97279305 97279306 - A PTBP2 3'UTR 0.21 TCGA-2W-A8YY-01 1 97279909 97279910 - T PTBP2 3'UTR 0.27 TCGA-2W-A8YY-01 1 97279937 97279937 C T PTBP2 3'UTR 0.40 TCGA-2W-A8YY-01 1 97280452 97280452 G A PTBP2 3'Flank 0.26 TCGA-2W-A8YY-01 1 9775808 9775808 C T PIK3CD Silent p.I117I 0.38 TCGA-2W-A8YY-01 1 9787445 9787445 G A PIK3CD 3'UTR 0.35 TCGA-2W-A8YY-01 1 9790325 9790325 C T CLSTN1 3'UTR 0.20 TCGA-2W-A8YY-01 1 9809912 9809912 C T CLSTN1 Missense_Mutation p.V237I 0.22 tolerated(0.07) benign(0.081) TCGA-2W-A8YY-01 1 98144674 98144674 T C DPYD Missense_Mutation p.Y276C 0.43 deleterious(0.03) benign(0.181) TCGA-2W-A8YY-01 1 981952 981952 C T AGRN Silent p.S1029S 0.39 TCGA-2W-A8YY-01 1 984412 984412 C T AGRN Missense_Mutation p.A1424V 0.37 deleterious(0.02) benign(0.252) TCGA-2W-A8YY-01 1 9910210 9910210 G A CTNNBIP1 3'UTR 0.39 TCGA-2W-A8YY-01 1 9910330 9910330 C T CTNNBIP1 3'UTR 0.33 TCGA-2W-A8YY-01 1 99380378 99380378 T C LPPR5 Silent p.R299R 0.08 TCGA-2W-A8YY-01 1 99387566 99387566 G A LPPR5 Missense_Mutation p.P224S 0.39 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 1 998520 998520 C T RP11-54O7.18 RNA 0.31 TCGA-2W-A8YY-01 20 10033898 10033898 A C ANKEF1 Missense_Mutation p.E670A 0.47 tolerated(0.47) benign(0.02) TCGA-2W-A8YY-01 20 10287611 10287612 - A SNAP25 3'UTR 0.41 TCGA-2W-A8YY-01 20 10388370 10388370 G A MKKS Missense_Mutation p.T389M 0.22 deleterious(0.01) possibly_damaging(0.903) TCGA-2W-A8YY-01 20 10622325 10622325 C T JAG1 Missense_Mutation p.R900Q 0.26 tolerated(0.11) benign(0.002) TCGA-2W-A8YY-01 20 10630929 10630929 G A JAG1 Silent p.C400C 0.57 TCGA-2W-A8YY-01 20 10633208 10633208 C T JAG1 Missense_Mutation p.C265Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 10644651 10644651 C T JAG1 Silent p.T133T 0.42 TCGA-2W-A8YY-01 20 1161887 1161887 C T TMEM74B Missense_Mutation p.A126T 0.43 deleterious(0) probably_damaging(0.974) TCGA-2W-A8YY-01 20 1161909 1161909 C T TMEM74B Silent p.P118P 0.33 TCGA-2W-A8YY-01 20 1184260 1184260 C T C20orf202 Missense_Mutation p.L34F 0.37 deleterious(0.05) benign(0.13) TCGA-2W-A8YY-01 20 11903784 11903784 G A BTBD3 Missense_Mutation p.D347N 0.38 tolerated(0.59) benign(0.008) TCGA-2W-A8YY-01 20 11905694 11905694 G A BTBD3 3'UTR 0.43 TCGA-2W-A8YY-01 20 1286130 1286130 C T SNPH Missense_Mutation p.A306V 0.34 tolerated(0.35) benign(0.011) TCGA-2W-A8YY-01 20 13029682 13029682 A G SPTLC3 Silent p.G69G 0.30 TCGA-2W-A8YY-01 20 13134785 13134785 C T SPTLC3 Missense_Mutation p.A472V 0.32 tolerated(0.26) benign(0.055) TCGA-2W-A8YY-01 20 13260370 13260370 C T ISM1 Silent p.P156P 0.42 TCGA-2W-A8YY-01 20 13370303 13370303 G T TASP1 3'UTR 0.19 TCGA-2W-A8YY-01 20 13370944 13370944 A - TASP1 3'UTR 0.11 TCGA-2W-A8YY-01 20 1350388 1350388 C T FKBP1A 3'UTR 0.47 TCGA-2W-A8YY-01 20 13765860 13765860 G A NDUFAF5 Missense_Mutation p.R49Q 0.40 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 20 1433236 1433236 T C NSFL1C Silent p.G231G 0.42 TCGA-2W-A8YY-01 20 1435630 1435630 T G NSFL1C Silent p.G144G 0.27 TCGA-2W-A8YY-01 20 1459054 1459054 G A SIRPB2 Missense_Mutation p.A217V 0.45 tolerated(0.13) probably_damaging(0.993) TCGA-2W-A8YY-01 20 1460526 1460526 G T SIRPB2 Silent p.G90G 0.46 TCGA-2W-A8YY-01 20 15480475 15480475 G A MACROD2 Missense_Mutation p.A210T 0.38 tolerated(0.34) benign(0.011) TCGA-2W-A8YY-01 20 16252851 16252851 G A KIF16B 3'UTR 0.39 TCGA-2W-A8YY-01 20 16253754 16253754 G A KIF16B 3'UTR 0.18 TCGA-2W-A8YY-01 20 16316609 16316609 G A KIF16B Nonsense_Mutation p.R410* 0.22 TCGA-2W-A8YY-01 20 16359927 16359927 C T KIF16B Missense_Mutation p.R907H 0.39 tolerated_low_confidence(0.07) benign(0.105) TCGA-2W-A8YY-01 20 16409635 16409635 G A KIF16B Silent p.Y479Y 0.37 TCGA-2W-A8YY-01 20 16486393 16486393 C T KIF16B Missense_Mutation p.G325E 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 17446044 17446044 G A PCSK2 Missense_Mutation p.V426I 0.20 tolerated(0.1) possibly_damaging(0.835) TCGA-2W-A8YY-01 20 17475018 17475018 C T BFSP1 Missense_Mutation p.E567K 0.31 tolerated(0.36) benign(0.015) TCGA-2W-A8YY-01 20 17594605 17594605 G A RRBP1 3'UTR 0.35 TCGA-2W-A8YY-01 20 17600943 17600943 C T RRBP1 Splice_Site p.X760_splice 0.33 TCGA-2W-A8YY-01 20 17602410 17602410 G A RRBP1 Silent p.T650T 0.37 TCGA-2W-A8YY-01 20 17639497 17639497 C T RRBP1 Intron 0.14 TCGA-2W-A8YY-01 20 17639744 17639744 T C RRBP1 Intron 0.45 TCGA-2W-A8YY-01 20 17922812 17922812 T C SNX5 3'UTR 0.50 TCGA-2W-A8YY-01 20 17934664 17934664 G A SNX5 Missense_Mutation p.A122V 0.32 tolerated(0.14) benign(0.001) TCGA-2W-A8YY-01 20 18123028 18123028 G A CSRP2BP 5'UTR 0.53 TCGA-2W-A8YY-01 20 18131559 18131559 A G CSRP2BP Missense_Mutation p.K158R 0.35 tolerated(0.72) benign(0.006) TCGA-2W-A8YY-01 20 18143181 18143181 C T CSRP2BP Silent p.P421P 0.38 TCGA-2W-A8YY-01 20 18162446 18162446 T C CSRP2BP Silent p.S588S 0.54 TCGA-2W-A8YY-01 20 18168067 18168067 G T CSRP2BP Missense_Mutation p.E771D 0.55 deleterious(0.02) benign(0.168) TCGA-2W-A8YY-01 20 18462334 18462334 G A POLR3F Silent p.T251T 0.48 TCGA-2W-A8YY-01 20 18464200 18464200 T C POLR3F Nonstop_Mutation p.*317Qext*1 0.15 TCGA-2W-A8YY-01 20 18496352 18496352 A G SEC23B Missense_Mutation p.Q113R 0.25 deleterious(0.01) benign(0.197) TCGA-2W-A8YY-01 20 18576707 18576707 G A DTD1 Silent p.S64S 0.27 TCGA-2W-A8YY-01 20 18724844 18724844 G A DTD1 Missense_Mutation p.R193H 0.43 tolerated_low_confidence(0.21) benign(0.082) TCGA-2W-A8YY-01 20 19666004 19666004 C A SLC24A3 Silent p.P441P 0.49 TCGA-2W-A8YY-01 20 20013291 20013291 G A NAA20 Missense_Mutation p.A149T 0.41 deleterious(0) possibly_damaging(0.907) TCGA-2W-A8YY-01 20 20152567 20152567 G A C20orf26 Intron 0.30 TCGA-2W-A8YY-01 20 20152574 20152574 G A C20orf26 Intron 0.28 TCGA-2W-A8YY-01 20 20350483 20350483 C T INSM1 3'UTR 0.22 TCGA-2W-A8YY-01 20 20351197 20351197 T C INSM1 3'UTR 0.34 TCGA-2W-A8YY-01 20 20351219 20351219 T C INSM1 3'UTR 0.34 TCGA-2W-A8YY-01 20 20453526 20453526 C T RALGAPA2 Silent p.T1814T 0.43 TCGA-2W-A8YY-01 20 20596685 20596685 A G RALGAPA2 Splice_Site p.X563_splice 0.40 TCGA-2W-A8YY-01 20 20599980 20599980 C T RALGAPA2 Missense_Mutation p.G494R 0.21 deleterious(0.05) probably_damaging(0.984) TCGA-2W-A8YY-01 20 2097530 2097530 C T STK35 Missense_Mutation p.R371W 0.32 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 20 2097591 2097591 T C STK35 Missense_Mutation p.L391P 0.57 deleterious(0.04) benign(0.03) TCGA-2W-A8YY-01 20 2125370 2125370 G A STK35 3'UTR 0.35 TCGA-2W-A8YY-01 20 2127089 2127089 C T STK35 3'UTR 0.54 TCGA-2W-A8YY-01 20 21327079 21327079 G A XRN2 Missense_Mutation p.R519Q 0.40 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 20 21346295 21346295 T C XRN2 Silent p.R803R 0.26 TCGA-2W-A8YY-01 20 21362639 21362639 G A XRN2 Silent p.R864R 0.31 TCGA-2W-A8YY-01 20 21367591 21367591 C T XRN2 Silent p.L912L 0.38 TCGA-2W-A8YY-01 20 21370103 21370103 T C XRN2 3'UTR 0.33 TCGA-2W-A8YY-01 20 21491742 21491742 G A NKX2-2 3'UTR 0.23 TCGA-2W-A8YY-01 20 22562595 22562595 C T FOXA2 Missense_Mutation p.A429T 0.41 tolerated(0.14) benign(0.34) TCGA-2W-A8YY-01 20 23016582 23016582 G A SSTR4 Silent p.A154A 0.50 TCGA-2W-A8YY-01 20 23016838 23016838 G A SSTR4 Missense_Mutation p.A240T 0.50 tolerated(0.12) probably_damaging(0.975) TCGA-2W-A8YY-01 20 23060733 23060733 G A CD93 3'UTR 0.41 TCGA-2W-A8YY-01 20 23334859 23334859 T C NXT1 Missense_Mutation p.F61L 0.14 deleterious(0) possibly_damaging(0.735) TCGA-2W-A8YY-01 20 23346080 23346080 G A GZF1 Missense_Mutation p.G354S 0.33 tolerated(0.54) benign(0.023) TCGA-2W-A8YY-01 20 23346376 23346376 G A GZF1 Silent p.T452T 0.34 TCGA-2W-A8YY-01 20 23351890 23351890 G A GZF1 3'UTR 0.38 TCGA-2W-A8YY-01 20 23351929 23351929 C T GZF1 3'UTR 0.35 TCGA-2W-A8YY-01 20 23420974 23420974 C T CSTL1 Missense_Mutation p.H24Y 0.36 tolerated(0.18) benign(0.006) TCGA-2W-A8YY-01 20 23473643 23473643 G A CST8 Missense_Mutation p.D94N 0.22 tolerated(0.45) benign(0.001) TCGA-2W-A8YY-01 20 23476530 23476531 - A CST8 Frame_Shift_Ins p.C139Vfs*2 0.27 TCGA-2W-A8YY-01 20 23545509 23545509 G A CST9L 3'UTR 0.27 TCGA-2W-A8YY-01 20 23860255 23860255 G A CST5 Missense_Mutation p.A20V 0.32 deleterious(0.02) possibly_damaging(0.722) TCGA-2W-A8YY-01 20 2464194 2464194 G A ZNF343 Silent p.G471G 0.46 TCGA-2W-A8YY-01 20 2464233 2464233 C T ZNF343 Silent p.T458T 0.40 TCGA-2W-A8YY-01 20 24949713 24949713 C T APMAP Missense_Mutation p.V286I 0.37 tolerated(0.13) benign(0.008) TCGA-2W-A8YY-01 20 24988366 24988366 C T ACSS1 3'UTR 0.14 TCGA-2W-A8YY-01 20 24994686 24994686 G C ACSS1 Missense_Mutation p.P455A 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 20 25053263 25053263 G A VSX1 3'Flank 0.10 TCGA-2W-A8YY-01 20 25239910 25239910 G A PYGB Missense_Mutation p.R94H 0.34 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 20 25257336 25257336 G A PYGB Missense_Mutation p.V239I 0.39 deleterious(0.05) possibly_damaging(0.843) TCGA-2W-A8YY-01 20 25259003 25259003 G A PYGB Missense_Mutation p.A302T 0.10 deleterious(0.02) probably_damaging(0.981) TCGA-2W-A8YY-01 20 25275581 25275581 C T ABHD12 3'UTR 0.38 TCGA-2W-A8YY-01 20 25282973 25282973 T C ABHD12 Missense_Mutation p.I347V 0.28 tolerated(0.06) benign(0.129) TCGA-2W-A8YY-01 20 25426634 25426634 G A GINS1 3'UTR 0.38 TCGA-2W-A8YY-01 20 25457530 25457530 G A NINL Silent p.C799C 0.43 TCGA-2W-A8YY-01 20 25477343 25477343 G A NINL Silent p.D422D 0.25 TCGA-2W-A8YY-01 20 25484646 25484646 G A NINL Missense_Mutation p.A268V 0.41 tolerated(0.61) benign(0.001) TCGA-2W-A8YY-01 20 25493563 25493563 G A NINL Silent p.D119D 0.47 TCGA-2W-A8YY-01 20 256608 256608 C T C20orf96 Splice_Site p.X344_splice 0.26 TCGA-2W-A8YY-01 20 25755801 25755801 G A FAM182B Missense_Mutation p.S52L 0.40 tolerated_low_confidence(0.36) possibly_damaging(0.514) TCGA-2W-A8YY-01 20 259848 259848 C T C20orf96 Missense_Mutation p.V144M 0.50 deleterious(0.04) probably_damaging(0.926) TCGA-2W-A8YY-01 20 2637177 2637177 C T NOP56 Nonsense_Mutation p.R381* 0.36 TCGA-2W-A8YY-01 20 2686860 2686860 C T EBF4 Missense_Mutation p.R118W 0.29 deleterious(0) probably_damaging(0.963) TCGA-2W-A8YY-01 20 271241 271241 A G C20orf96 Missense_Mutation p.V4A 0.37 tolerated(0.88) benign(0.011) TCGA-2W-A8YY-01 20 271248 271248 C T C20orf96 Missense_Mutation p.A2T 0.32 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 20 2778813 2778813 C A CPXM1 Missense_Mutation p.R192M 0.42 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 20 2842302 2842302 C T VPS16 Missense_Mutation p.A284V 0.41 tolerated(0.48) benign(0.173) TCGA-2W-A8YY-01 20 2843565 2843565 C T VPS16 Missense_Mutation p.P439L 0.25 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 20 29845518 29845518 C A DEFB115 Missense_Mutation p.L18M 0.37 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 20 29965104 29965104 C T DEFB118 3'Flank 0.35 TCGA-2W-A8YY-01 20 30070204 30070204 C T REM1 Missense_Mutation p.R180W 0.78 deleterious(0) probably_damaging(0.925) TCGA-2W-A8YY-01 20 30132747 30132747 C T HM13 Intron 0.40 TCGA-2W-A8YY-01 20 30132765 30132766 - T HM13 Frame_Shift_Ins p.P130Sfs*28 0.24 TCGA-2W-A8YY-01 20 30155921 30155921 C T HM13 Missense_Mutation p.L359F 0.46 tolerated(0.07) possibly_damaging(0.653) TCGA-2W-A8YY-01 20 30193731 30193731 C T ID1 Intron 0.31 TCGA-2W-A8YY-01 20 3026884 3026884 T C MRPS26 Missense_Mutation p.M57T 0.56 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 20 3028563 3028563 C T MRPS26 3'UTR 0.38 TCGA-2W-A8YY-01 20 30584708 30584708 C T XKR7 Silent p.A396A 0.34 TCGA-2W-A8YY-01 20 30662495 30662495 C T HCK Silent p.V133V 0.13 TCGA-2W-A8YY-01 20 30753967 30753967 G A TM9SF4 3'UTR 0.20 TCGA-2W-A8YY-01 20 30777488 30777488 G A PLAGL2 3'Flank 0.20 TCGA-2W-A8YY-01 20 30783128 30783128 C A PLAGL2 3'UTR 0.30 TCGA-2W-A8YY-01 20 30784306 30784306 C T PLAGL2 Silent p.T480T 0.37 TCGA-2W-A8YY-01 20 30818828 30818828 T C POFUT1 Silent p.S314S 0.12 TCGA-2W-A8YY-01 20 30898532 30898532 G A KIF3B Missense_Mutation p.G318R 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 3090766 3090766 G A UBOX5 Missense_Mutation p.R538W 0.47 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 30919145 30919145 G A KIF3B 3'UTR 0.40 TCGA-2W-A8YY-01 20 309518 309518 C A SOX12 3'UTR 0.23 TCGA-2W-A8YY-01 20 3102943 3102943 C T UBOX5 Silent p.A114A 0.48 TCGA-2W-A8YY-01 20 3103026 3103026 C T UBOX5 Missense_Mutation p.A87T 0.50 tolerated(0.83) benign(0.002) TCGA-2W-A8YY-01 20 31108636 31108636 G A C20orf112 Silent p.N95N 0.38 TCGA-2W-A8YY-01 20 31238546 31238546 G A C20orf203 RNA 0.39 TCGA-2W-A8YY-01 20 3127480 3127480 C T FASTKD5 Missense_Mutation p.R746Q 0.36 tolerated(0.06) benign(0.297) TCGA-2W-A8YY-01 20 3127658 3127658 C T FASTKD5 Missense_Mutation p.A687T 0.19 tolerated(0.55) benign(0.003) TCGA-2W-A8YY-01 20 3129005 3129005 C A FASTKD5 Nonsense_Mutation p.E238* 0.35 TCGA-2W-A8YY-01 20 31367779 31367779 G A DNMT3B Intron 0.11 TCGA-2W-A8YY-01 20 31375172 31375172 G A DNMT3B Missense_Mutation p.R190H 0.31 tolerated(0.06) benign(0.002) TCGA-2W-A8YY-01 20 31393175 31393175 G A DNMT3B Missense_Mutation p.E755K 0.34 tolerated(0.07) probably_damaging(0.948) TCGA-2W-A8YY-01 20 31395652 31395652 C T DNMT3B Silent p.S835S 0.39 TCGA-2W-A8YY-01 20 31413783 31413783 G A MAPRE1 Missense_Mutation p.R17Q 0.53 deleterious(0.03) possibly_damaging(0.665) TCGA-2W-A8YY-01 20 3144031 3144031 C T LZTS3 3'UTR 0.37 TCGA-2W-A8YY-01 20 31600673 31600673 C T BPIFB2 Missense_Mutation p.R90C 0.35 deleterious(0.01) probably_damaging(0.912) TCGA-2W-A8YY-01 20 31671202 31671202 C A BPIFB4 Missense_Mutation p.H67N 0.39 deleterious_low_confidence(0.01) benign(0.114) TCGA-2W-A8YY-01 20 31756984 31756984 C T BPIFA2 Silent p.C11C 0.50 TCGA-2W-A8YY-01 20 31829894 31829894 C T BPIFA1 Silent p.G233G 0.43 TCGA-2W-A8YY-01 20 31998055 31998055 C T SNTA1 Missense_Mutation p.G375S 0.12 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 31998072 31998072 C T SNTA1 Missense_Mutation p.R369H 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 32000135 32000135 C T SNTA1 Missense_Mutation p.R336Q 0.44 tolerated(0.16) benign(0.007) TCGA-2W-A8YY-01 20 32005636 32005636 C T SNTA1 Missense_Mutation p.R197Q 0.39 tolerated(0.56) benign(0.003) TCGA-2W-A8YY-01 20 32228282 32228282 G A CBFA2T2 Missense_Mutation p.R487Q 0.29 deleterious(0.03) possibly_damaging(0.67) TCGA-2W-A8YY-01 20 32232207 32232207 G A CBFA2T2 Missense_Mutation p.A524T 0.13 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 32232574 32232574 G A CBFA2T2 3'UTR 0.41 TCGA-2W-A8YY-01 20 32237229 32237229 T C CBFA2T2 3'UTR 0.32 TCGA-2W-A8YY-01 20 32246570 32246570 C T NECAB3 Missense_Mutation p.R317H 0.27 tolerated(0.07) possibly_damaging(0.871) TCGA-2W-A8YY-01 20 32263981 32263981 G A E2F1 3'UTR 0.30 TCGA-2W-A8YY-01 20 32265324 32265324 C T E2F1 Missense_Mutation p.D250N 0.10 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 20 32371590 32371590 G A ZNF341 Missense_Mutation p.G584E 0.37 tolerated(0.41) benign(0.047) TCGA-2W-A8YY-01 20 32436284 32436284 G A CHMP4B Missense_Mutation p.A68T 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 20 32436436 32436436 G A CHMP4B Silent p.A118A 0.32 TCGA-2W-A8YY-01 20 32848299 32848299 C A ASIP Missense_Mutation p.S40Y 0.21 tolerated(0.14) probably_damaging(0.99) TCGA-2W-A8YY-01 20 32873386 32873386 G A AHCY Missense_Mutation p.R343W 0.35 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-2W-A8YY-01 20 32883240 32883240 C T AHCY Silent p.T60T 0.31 TCGA-2W-A8YY-01 20 32957208 32957208 C T ITCH 5'UTR 0.24 TCGA-2W-A8YY-01 20 33059285 33059285 A G ITCH Missense_Mutation p.T553A 0.52 deleterious(0.04) benign(0.004) TCGA-2W-A8YY-01 20 33225685 33225685 G T PIGU Silent p.A141A 0.39 TCGA-2W-A8YY-01 20 33296623 33296623 C T TP53INP2 Missense_Mutation p.S27L 0.33 deleterious(0.01) probably_damaging(0.925) TCGA-2W-A8YY-01 20 33300980 33300980 G A TP53INP2 3'UTR 0.42 TCGA-2W-A8YY-01 20 33302997 33302997 G A NCOA6 3'UTR 0.67 TCGA-2W-A8YY-01 20 33337879 33337879 G A NCOA6 Missense_Mutation p.L707F 0.15 probably_damaging(0.982) TCGA-2W-A8YY-01 20 33345429 33345430 - G NCOA6 Frame_Shift_Ins p.P375Sfs*39 0.37 TCGA-2W-A8YY-01 20 33370189 33370189 G A NCOA6 5'UTR 0.29 TCGA-2W-A8YY-01 20 33449264 33449264 C A GGT7 Missense_Mutation p.R220I 0.34 tolerated(0.2) benign(0.173) TCGA-2W-A8YY-01 20 33514703 33514703 G A ACSS2 Missense_Mutation p.A656T 0.19 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 33567510 33567510 G A MYH7B Missense_Mutation p.R124H 0.41 possibly_damaging(0.607) TCGA-2W-A8YY-01 20 33576051 33576051 G A MYH7B Missense_Mutation p.D567N 0.36 probably_damaging(0.984) TCGA-2W-A8YY-01 20 33581227 33581227 C T MYH7B Missense_Mutation p.R842C 0.31 probably_damaging(1) TCGA-2W-A8YY-01 20 33582138 33582138 G T MYH7B Missense_Mutation p.Q920H 0.11 possibly_damaging(0.735) TCGA-2W-A8YY-01 20 33585211 33585211 G A MYH7B Missense_Mutation p.R1214H 0.38 possibly_damaging(0.522) TCGA-2W-A8YY-01 20 33585263 33585263 G A MYH7B Silent p.A1231A 0.20 TCGA-2W-A8YY-01 20 33585307 33585307 C T MYH7B Missense_Mutation p.A1246V 0.41 benign(0.003) TCGA-2W-A8YY-01 20 33587670 33587670 G A MYH7B Missense_Mutation p.R1623Q 0.31 benign(0.139) TCGA-2W-A8YY-01 20 33588347 33588347 C T MYH7B Missense_Mutation p.A1720V 0.42 benign(0.001) TCGA-2W-A8YY-01 20 33719529 33719529 C T EDEM2 Missense_Mutation p.G254R 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 33855097 33855097 C T MMP24 Missense_Mutation p.R357C 0.47 deleterious(0.03) probably_damaging(0.993) TCGA-2W-A8YY-01 20 34022943 34022943 G A GDF5OS 3'UTR 0.48 TCGA-2W-A8YY-01 20 34025185 34025185 G A GDF5 Missense_Mutation p.S175L 0.28 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 20 34085704 34085704 C T CEP250 Nonsense_Mutation p.R1155* 0.45 TCGA-2W-A8YY-01 20 34089683 34089683 T C CEP250 Missense_Mutation p.W1304R 0.44 probably_damaging(0.979) TCGA-2W-A8YY-01 20 34110297 34110297 C T C20orf173 3'Flank 0.38 TCGA-2W-A8YY-01 20 34136300 34136300 G A ERGIC3 Missense_Mutation p.R167H 0.29 deleterious(0.01) benign(0.432) TCGA-2W-A8YY-01 20 34143893 34143893 G A ERGIC3 Silent p.A274A 0.37 TCGA-2W-A8YY-01 20 34170226 34170226 G A FER1L4 RNA 0.67 TCGA-2W-A8YY-01 20 34188494 34188494 C T FER1L4 RNA 0.44 TCGA-2W-A8YY-01 20 34220780 34220780 G A CPNE1 Silent p.I27I 0.12 TCGA-2W-A8YY-01 20 34237613 34237613 T G RBM12 3'UTR 0.37 TCGA-2W-A8YY-01 20 34238334 34238334 C T RBM12 3'UTR 0.43 TCGA-2W-A8YY-01 20 34246929 34246930 - T RBM12 5'UTR 0.13 TCGA-2W-A8YY-01 20 34260753 34260753 G A NFS1 Missense_Mutation p.R412C 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 20 34292306 34292306 G A RBM39 3'UTR 0.40 TCGA-2W-A8YY-01 20 34327370 34327370 C T RBM39 Intron 0.15 TCGA-2W-A8YY-01 20 34451082 34451082 C T PHF20 Nonsense_Mutation p.R190* 0.10 TCGA-2W-A8YY-01 20 34519172 34519172 T C PHF20 Silent p.G702G 0.38 TCGA-2W-A8YY-01 20 34526918 34526918 C T PHF20 Missense_Mutation p.A867V 0.48 deleterious(0.04) benign(0.034) TCGA-2W-A8YY-01 20 34535636 34535636 C T PHF20 3'UTR 0.43 TCGA-2W-A8YY-01 20 34568444 34568444 G A CNBD2 Missense_Mutation p.E103K 0.22 deleterious(0) probably_damaging(0.944) TCGA-2W-A8YY-01 20 34638323 34638323 T G LINC00657 RNA 0.10 TCGA-2W-A8YY-01 20 34713439 34713439 G A snoU13 3'Flank 0.46 TCGA-2W-A8YY-01 20 34778279 34778279 G A EPB41L1 Silent p.E369E 0.33 TCGA-2W-A8YY-01 20 34800281 34800281 G A EPB41L1 Missense_Mutation p.A723T 0.22 tolerated(1) benign(0) TCGA-2W-A8YY-01 20 34832792 34832792 G A AAR2 Missense_Mutation p.A311T 0.38 tolerated(0.48) benign(0.041) TCGA-2W-A8YY-01 20 35075134 35075134 C T DLGAP4 Missense_Mutation p.A481V 0.47 tolerated(0.19) benign(0.009) TCGA-2W-A8YY-01 20 35156070 35156070 C T DLGAP4 3'UTR 0.32 TCGA-2W-A8YY-01 20 35156316 35156316 G A DLGAP4 3'UTR 0.42 TCGA-2W-A8YY-01 20 35156409 35156409 C T DLGAP4 3'UTR 0.38 TCGA-2W-A8YY-01 20 35173356 35173356 C T MYL9 Silent p.F23F 0.29 TCGA-2W-A8YY-01 20 35207238 35207238 C T TGIF2 Missense_Mutation p.R21C 0.38 deleterious(0.02) benign(0.066) TCGA-2W-A8YY-01 20 35281349 35281349 C T NDRG3 3'UTR 0.33 TCGA-2W-A8YY-01 20 35390919 35390919 C T DSN1 Missense_Mutation p.A179T 0.28 tolerated(0.78) benign(0.078) TCGA-2W-A8YY-01 20 35421780 35421780 C T SOGA1 Missense_Mutation p.A1569T 0.50 tolerated(0.48) benign(0.017) TCGA-2W-A8YY-01 20 35421924 35421924 C T SOGA1 Missense_Mutation p.E1521K 0.41 tolerated(0.29) possibly_damaging(0.721) TCGA-2W-A8YY-01 20 35422255 35422255 C T SOGA1 Silent p.S1410S 0.41 TCGA-2W-A8YY-01 20 35443698 35443698 C T SOGA1 Missense_Mutation p.R716H 0.56 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 35444364 35444364 C T SOGA1 Missense_Mutation p.R494H 0.30 tolerated(0.18) possibly_damaging(0.796) TCGA-2W-A8YY-01 20 35507522 35507522 C A TLDC2 Missense_Mutation p.L90M 0.28 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 20 35635838 35635838 G A RBL1 Silent p.Y949Y 0.34 TCGA-2W-A8YY-01 20 35832287 35832287 G A RPN2 Splice_Site p.X160_splice 0.40 TCGA-2W-A8YY-01 20 35884837 35884837 C T GHRH Missense_Mutation p.A50T 0.51 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 36012567 36012567 A G SRC Missense_Mutation p.N4S 0.27 tolerated_low_confidence(0.97) benign(0) TCGA-2W-A8YY-01 20 36031710 36031710 G A SRC Silent p.E513E 0.13 TCGA-2W-A8YY-01 20 36031769 36031769 G A SRC Missense_Mutation p.G533E 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 20 36031969 36031969 G A SRC 3'UTR 0.35 TCGA-2W-A8YY-01 20 36032785 36032785 G A SRC 3'UTR 0.40 TCGA-2W-A8YY-01 20 36151580 36151580 G A NNAT 3'UTR 0.43 TCGA-2W-A8YY-01 20 36151610 36151610 G A NNAT 3'UTR 0.40 TCGA-2W-A8YY-01 20 3641280 3641280 T C GFRA4 Missense_Mutation p.D207G 0.62 tolerated(0.07) possibly_damaging(0.822) TCGA-2W-A8YY-01 20 36573359 36573359 C T VSTM2L 3'UTR 0.47 TCGA-2W-A8YY-01 20 36625199 36625199 G T TTI1 Missense_Mutation p.L984M 0.30 deleterious(0.01) possibly_damaging(0.897) TCGA-2W-A8YY-01 20 36720523 36720524 - T RPRD1B 3'UTR 0.30 TCGA-2W-A8YY-01 20 36766613 36766613 C T TGM2 Missense_Mutation p.R506H 0.08 tolerated(0.09) benign(0.006) TCGA-2W-A8YY-01 20 36776420 36776420 G A TGM2 Silent p.G208G 0.42 TCGA-2W-A8YY-01 20 36789912 36789912 G A TGM2 Nonsense_Mutation p.R34* 0.47 TCGA-2W-A8YY-01 20 36789936 36789936 G T TGM2 Missense_Mutation p.L26M 0.16 tolerated(0.5) benign(0.165) TCGA-2W-A8YY-01 20 3686463 3686463 C T SIGLEC1 Missense_Mutation p.G212S 0.32 tolerated(0.42) benign(0.131) TCGA-2W-A8YY-01 20 36997747 36997747 A C LBP Missense_Mutation p.I364L 0.40 tolerated(0.05) benign(0.162) TCGA-2W-A8YY-01 20 37058437 37058437 G A SNORA71C RNA 0.35 TCGA-2W-A8YY-01 20 37101484 37101484 G A RALGAPB 5'UTR 0.39 TCGA-2W-A8YY-01 20 37117123 37117123 A C RALGAPB Missense_Mutation p.Q16H 0.10 tolerated(0.12) possibly_damaging(0.632) TCGA-2W-A8YY-01 20 37198601 37198601 G T RALGAPB Missense_Mutation p.R1342I 0.52 deleterious(0) benign(0.109) TCGA-2W-A8YY-01 20 3721527 3721527 G A HSPA12B Missense_Mutation p.G37S 0.09 tolerated_low_confidence(0.49) benign(0.114) TCGA-2W-A8YY-01 20 3722946 3722947 - C HSPA12B Frame_Shift_Ins p.Q55Pfs*12 0.40 TCGA-2W-A8YY-01 20 3728948 3728948 C T HSPA12B Missense_Mutation p.R254C 0.37 deleterious(0) probably_damaging(0.969) TCGA-2W-A8YY-01 20 37357196 37357196 G A SLC32A1 Missense_Mutation p.V498I 0.36 tolerated(0.87) benign(0.002) TCGA-2W-A8YY-01 20 37357243 37357243 G T SLC32A1 Missense_Mutation p.E513D 0.44 tolerated(0.1) benign(0.281) TCGA-2W-A8YY-01 20 37378711 37378711 G A ACTR5 Missense_Mutation p.R145Q 0.34 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 20 37396158 37396158 C T ACTR5 Silent p.G495G 0.43 TCGA-2W-A8YY-01 20 37531340 37531340 C T PPP1R16B Missense_Mutation p.R201W 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 37536832 37536832 A C PPP1R16B Missense_Mutation p.D397A 0.32 tolerated(0.55) benign(0.114) TCGA-2W-A8YY-01 20 37547315 37547315 G A PPP1R16B 3'UTR 0.20 TCGA-2W-A8YY-01 20 37580397 37580397 G A FAM83D Missense_Mutation p.R361Q 0.30 deleterious(0.02) probably_damaging(0.948) TCGA-2W-A8YY-01 20 37580686 37580686 G T FAM83D Missense_Mutation p.R457S 0.39 deleterious(0) possibly_damaging(0.849) TCGA-2W-A8YY-01 20 37630419 37630419 G T DHX35 Missense_Mutation p.R230M 0.30 tolerated(0.05) benign(0.149) TCGA-2W-A8YY-01 20 3764816 3764816 G A CENPB 3'UTR 0.11 TCGA-2W-A8YY-01 20 37652346 37652346 G A DHX35 Missense_Mutation p.R536H 0.30 deleterious(0.02) benign(0.219) TCGA-2W-A8YY-01 20 3765547 3765547 G A CENPB Silent p.D528D 0.31 TCGA-2W-A8YY-01 20 3765576 3765576 C T CENPB Missense_Mutation p.D519N 0.26 deleterious_low_confidence(0.02) benign(0.299) TCGA-2W-A8YY-01 20 377655 377655 G A TRIB3 3'UTR 0.55 TCGA-2W-A8YY-01 20 3781409 3781409 G T CDC25B Missense_Mutation p.S160I 0.08 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 3781509 3781509 G T CDC25B Missense_Mutation p.E193D 0.37 deleterious(0.05) benign(0.077) TCGA-2W-A8YY-01 20 3781694 3781694 G A CDC25B Missense_Mutation p.R220H 0.32 tolerated(0.13) benign(0.082) TCGA-2W-A8YY-01 20 3786729 3786729 C A CDC25B 3'UTR 0.37 TCGA-2W-A8YY-01 20 3786746 3786746 C T CDC25B 3'UTR 0.45 TCGA-2W-A8YY-01 20 3804835 3804835 G A AP5S1 Missense_Mutation p.R165H 0.45 tolerated(0.11) benign(0.007) TCGA-2W-A8YY-01 20 39315732 39315732 G A MAFB 3'UTR 0.10 TCGA-2W-A8YY-01 20 39708810 39708810 G T TOP1 Missense_Mutation p.D141Y 0.36 deleterious(0) benign(0.136) TCGA-2W-A8YY-01 20 39750661 39750661 G T TOP1 Missense_Mutation p.K687N 0.40 deleterious(0.01) possibly_damaging(0.655) TCGA-2W-A8YY-01 20 39752862 39752862 T C TOP1 3'UTR 0.18 TCGA-2W-A8YY-01 20 39795201 39795201 C T PLCG1 Missense_Mutation p.R696W 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 39796553 39796553 C A PLCG1 Missense_Mutation p.P788H 0.33 tolerated(0.15) benign(0.016) TCGA-2W-A8YY-01 20 39802136 39802136 C T PLCG1 Missense_Mutation p.A1119V 0.18 tolerated(0.09) benign(0.189) TCGA-2W-A8YY-01 20 39831558 39831559 - T ZHX3 Frame_Shift_Ins p.V667Sfs*4 0.34 TCGA-2W-A8YY-01 20 39974622 39974622 C T LPIN3 Missense_Mutation p.S60L 0.46 deleterious(0) possibly_damaging(0.702) TCGA-2W-A8YY-01 20 39987566 39987566 G A LPIN3 3'UTR 0.38 TCGA-2W-A8YY-01 20 39990546 39990546 C T EMILIN3 Missense_Mutation p.A555T 0.35 tolerated(0.7) benign(0.003) TCGA-2W-A8YY-01 20 39991493 39991493 C A EMILIN3 Missense_Mutation p.R239I 0.47 deleterious(0.03) benign(0.235) TCGA-2W-A8YY-01 20 40049312 40049312 G A CHD6 Missense_Mutation p.P1988L 0.09 tolerated_low_confidence(0.11) benign(0.005) TCGA-2W-A8YY-01 20 40141512 40141512 T C CHD6 Silent p.S275S 0.41 TCGA-2W-A8YY-01 20 40706906 40706906 T C PTPRT 3'UTR 0.42 TCGA-2W-A8YY-01 20 40713439 40713439 C A PTPRT Missense_Mutation p.W1340L 0.19 deleterious(0.03) possibly_damaging(0.583) TCGA-2W-A8YY-01 20 4158175 4158175 G A SMOX Missense_Mutation p.R129H 0.39 tolerated(0.12) benign(0.009) TCGA-2W-A8YY-01 20 4163264 4163264 G A SMOX Missense_Mutation p.E380K 0.33 deleterious(0.01) benign(0.403) TCGA-2W-A8YY-01 20 417430 417430 G A TBC1D20 3'UTR 0.34 TCGA-2W-A8YY-01 20 419260 419260 G A TBC1D20 Silent p.A394A 0.42 TCGA-2W-A8YY-01 20 42091501 42091501 A G SRSF6 3'UTR 0.40 TCGA-2W-A8YY-01 20 42091637 42091637 C T SRSF6 3'UTR 0.51 TCGA-2W-A8YY-01 20 42157374 42157374 C T L3MBTL1 Missense_Mutation p.L292F 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 20 42264565 42264565 G T IFT52 Splice_Site p.X308_splice 0.15 TCGA-2W-A8YY-01 20 4228843 4228843 G A ADRA1D Silent p.Y254Y 0.14 TCGA-2W-A8YY-01 20 42331427 42331427 C T MYBL2 Missense_Mutation p.R417C 0.46 deleterious(0.04) probably_damaging(0.915) TCGA-2W-A8YY-01 20 42806542 42806542 C A JPH2 Intron 0.29 TCGA-2W-A8YY-01 20 42885971 42885971 G A GDAP1L1 Missense_Mutation p.R120H 0.31 deleterious(0.04) possibly_damaging(0.553) TCGA-2W-A8YY-01 20 42907674 42907674 C T GDAP1L1 Missense_Mutation p.L280F 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 43042426 43042426 G T HNF4A Missense_Mutation p.V160F 0.37 tolerated(0.05) benign(0.121) TCGA-2W-A8YY-01 20 43117918 43117918 G A TTPAL Silent p.G255G 0.32 TCGA-2W-A8YY-01 20 43249661 43249661 G A ADA Silent p.L325L 0.27 TCGA-2W-A8YY-01 20 43378885 43378885 C T KCNK15 Silent p.N133N 0.44 TCGA-2W-A8YY-01 20 43383754 43383754 T - RIMS4 3'Flank 0.56 TCGA-2W-A8YY-01 20 43384410 43384410 A G RIMS4 3'Flank 0.42 TCGA-2W-A8YY-01 20 43400011 43400011 C A RIMS4 Missense_Mutation p.E48D 0.51 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-2W-A8YY-01 20 43530427 43530427 C T YWHAB Missense_Mutation p.R85C 0.29 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-2W-A8YY-01 20 43561008 43561008 G A PABPC1L Missense_Mutation p.G422D 0.12 deleterious(0.02) benign(0.097) TCGA-2W-A8YY-01 20 43708128 43708128 C T STK4 3'UTR 0.25 TCGA-2W-A8YY-01 20 43739410 43739410 G A WFDC5 Missense_Mutation p.S31L 0.19 tolerated(0.66) benign(0.054) TCGA-2W-A8YY-01 20 43922562 43922562 C A MATN4 Missense_Mutation p.S558I 0.08 benign(0.185) TCGA-2W-A8YY-01 20 43955487 43955487 C T SDC4 3'UTR 0.33 TCGA-2W-A8YY-01 20 44181815 44181815 A G WFDC8 Silent p.C182C 0.18 TCGA-2W-A8YY-01 20 44506803 44506803 C A ZSWIM3 Missense_Mutation p.L536I 0.21 deleterious(0.02) benign(0.181) TCGA-2W-A8YY-01 20 44507533 44507533 C T ZSWIM3 3'UTR 0.37 TCGA-2W-A8YY-01 20 44512283 44512283 A G ZSWIM1 Missense_Mutation p.K351R 0.49 tolerated(0.07) benign(0.307) TCGA-2W-A8YY-01 20 44512344 44512344 C T ZSWIM1 Silent p.T371T 0.25 TCGA-2W-A8YY-01 20 44512964 44512964 T C ZSWIM1 3'UTR 0.27 TCGA-2W-A8YY-01 20 44523668 44523668 C - CTSA Frame_Shift_Del p.C349Afs*36 0.24 TCGA-2W-A8YY-01 20 44569115 44569115 C T PCIF1 Missense_Mutation p.S84L 0.41 deleterious(0.01) benign(0.071) TCGA-2W-A8YY-01 20 44573511 44573511 G A PCIF1 Missense_Mutation p.R337H 0.24 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 44576159 44576159 G A PCIF1 Intron 0.38 TCGA-2W-A8YY-01 20 44578026 44578026 G A ZNF335 Silent p.G1255G 0.49 TCGA-2W-A8YY-01 20 44589103 44589103 G T ZNF335 Missense_Mutation p.A615D 0.36 deleterious(0.02) benign(0.306) TCGA-2W-A8YY-01 20 44592273 44592273 G A ZNF335 Missense_Mutation p.P458S 0.25 tolerated(0.24) possibly_damaging(0.714) TCGA-2W-A8YY-01 20 44594406 44594406 G A ZNF335 Silent p.S321S 0.41 TCGA-2W-A8YY-01 20 44666005 44666005 G A SLC12A5 Missense_Mutation p.G221D 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 44672545 44672545 G A SLC12A5 Missense_Mutation p.C479Y 0.42 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 20 44682240 44682240 T C SLC12A5 Silent p.R880R 0.40 TCGA-2W-A8YY-01 20 44686427 44686427 G A SLC12A5 3'Flank 0.48 TCGA-2W-A8YY-01 20 44686541 44686541 C T SLC12A5 3'Flank 0.10 TCGA-2W-A8YY-01 20 44688711 44688711 G A SLC12A5 3'Flank 0.32 TCGA-2W-A8YY-01 20 44689965 44689965 G A NCOA5 3'UTR 0.31 TCGA-2W-A8YY-01 20 44699070 44699070 G A NCOA5 Silent p.A48A 0.35 TCGA-2W-A8YY-01 20 44757777 44757777 C T CD40 3'UTR 0.36 TCGA-2W-A8YY-01 20 44869746 44869746 G A CDH22 Missense_Mutation p.R136W 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 44980701 44980701 C T SLC35C2 Missense_Mutation p.G276S 0.40 deleterious(0.04) probably_damaging(0.988) TCGA-2W-A8YY-01 20 44996151 44996151 A G ELMO2 Missense_Mutation p.S671P 0.32 tolerated(0.17) benign(0.001) TCGA-2W-A8YY-01 20 45012059 45012059 C T ELMO2 Missense_Mutation p.R251Q 0.36 deleterious(0) possibly_damaging(0.557) TCGA-2W-A8YY-01 20 45179173 45179173 C A OCSTAMP Missense_Mutation p.E9D 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.551) TCGA-2W-A8YY-01 20 45237435 45237435 C A SLC13A3 Intron 0.29 TCGA-2W-A8YY-01 20 45315695 45315695 C T TP53RK Missense_Mutation p.M153I 0.33 deleterious(0.03) benign(0.304) TCGA-2W-A8YY-01 20 45354782 45354782 C T SLC2A10 Silent p.S369S 0.35 TCGA-2W-A8YY-01 20 45725763 45725763 T G EYA2 Missense_Mutation p.F282V 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 45853038 45853038 G A ZMYND8 Missense_Mutation p.T1017I 0.09 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 45867748 45867748 C T ZMYND8 Missense_Mutation p.V807I 0.51 tolerated_low_confidence(0.42) benign(0.005) TCGA-2W-A8YY-01 20 45905210 45905210 C T ZMYND8 Missense_Mutation p.R443Q 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.511) TCGA-2W-A8YY-01 20 46264716 46264716 T A NCOA3 Missense_Mutation p.I529N 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 46331328 46331328 G A SULF2 Missense_Mutation p.R168C 0.51 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 46386077 46386077 G A SULF2 Silent p.L11L 0.47 TCGA-2W-A8YY-01 20 468128 468128 G A CSNK2A1 Nonsense_Mutation p.R306* 0.36 TCGA-2W-A8YY-01 20 4708775 4708775 C T PRND 3'UTR 0.39 TCGA-2W-A8YY-01 20 4766942 4766942 T C RASSF2 Silent p.V282V 0.19 TCGA-2W-A8YY-01 20 47692042 47692042 A G CSE1L Silent p.K440K 0.40 TCGA-2W-A8YY-01 20 47701839 47701839 G A CSE1L Missense_Mutation p.A547T 0.21 tolerated(0.46) benign(0.017) TCGA-2W-A8YY-01 20 47707278 47707278 G C CSE1L Splice_Site p.X728_splice 0.36 TCGA-2W-A8YY-01 20 47736630 47736630 G A STAU1 Silent p.G334G 0.45 TCGA-2W-A8YY-01 20 47770489 47770489 C A STAU1 Nonsense_Mutation p.G109* 0.26 TCGA-2W-A8YY-01 20 47851624 47851624 C T DDX27 Missense_Mutation p.R507W 0.38 deleterious(0.01) benign(0.117) TCGA-2W-A8YY-01 20 47863916 47863916 G A ZNFX1 Missense_Mutation p.T1882I 0.47 deleterious(0.01) possibly_damaging(0.839) TCGA-2W-A8YY-01 20 47865968 47865968 G A ZNFX1 Missense_Mutation p.S1198L 0.16 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 47881369 47881369 G A ZNFX1 Missense_Mutation p.R679W 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 47887263 47887263 G A ZNFX1 Silent p.Y362Y 0.29 TCGA-2W-A8YY-01 20 47991215 47991215 G A KCNB1 Silent p.R294R 0.19 TCGA-2W-A8YY-01 20 48124481 48124481 G A PTGIS Silent p.P493P 0.08 TCGA-2W-A8YY-01 20 48129678 48129678 C T PTGIS Missense_Mutation p.R382H 0.44 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 20 48249517 48249517 T A B4GALT5 3'UTR 0.32 TCGA-2W-A8YY-01 20 48257012 48257012 C T B4GALT5 Intron 0.26 TCGA-2W-A8YY-01 20 48257081 48257081 C T B4GALT5 Missense_Mutation p.R243H 0.33 tolerated(0.15) possibly_damaging(0.479) TCGA-2W-A8YY-01 20 48259031 48259031 G A B4GALT5 Nonsense_Mutation p.Q194* 0.43 TCGA-2W-A8YY-01 20 48500552 48500552 G T SLC9A8 Missense_Mutation p.K496N 0.42 tolerated(0.16) benign(0.009) TCGA-2W-A8YY-01 20 48521725 48521725 C T SPATA2 3'UTR 0.10 TCGA-2W-A8YY-01 20 4855286 4855286 A G SLC23A2 Missense_Mutation p.L294P 0.09 deleterious(0.01) possibly_damaging(0.899) TCGA-2W-A8YY-01 20 48562686 48562686 C T RNF114 Missense_Mutation p.R138C 0.44 deleterious(0) benign(0.255) TCGA-2W-A8YY-01 20 48600819 48600819 G A SNAI1 Missense_Mutation p.V181I 0.37 tolerated(0.16) possibly_damaging(0.753) TCGA-2W-A8YY-01 20 49191062 49191062 C T PTPN1 Silent p.C121C 0.50 TCGA-2W-A8YY-01 20 49191101 49191101 C A PTPN1 Silent p.I134I 0.44 TCGA-2W-A8YY-01 20 49195126 49195126 G A PTPN1 Missense_Mutation p.R221K 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 49199374 49199374 G A PTPN1 3'UTR 0.29 TCGA-2W-A8YY-01 20 49225070 49225070 A G FAM65C Missense_Mutation p.V267A 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 49227404 49227404 A T FAM65C Missense_Mutation p.F134I 0.20 deleterious(0) probably_damaging(0.953) TCGA-2W-A8YY-01 20 49366261 49366261 G A PARD6B Missense_Mutation p.V119I 0.41 tolerated(0.43) benign(0.015) TCGA-2W-A8YY-01 20 49366685 49366685 G A PARD6B Missense_Mutation p.R260Q 0.16 tolerated(0.14) benign(0.194) TCGA-2W-A8YY-01 20 49508536 49508536 G A ADNP Silent p.N905N 0.34 TCGA-2W-A8YY-01 20 49576260 49576260 G T MOCS3 Missense_Mutation p.R294M 0.38 tolerated(0.08) benign(0.222) TCGA-2W-A8YY-01 20 49576449 49576449 G A MOCS3 Missense_Mutation p.R357K 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 49576657 49576657 G A MOCS3 Silent p.Q426Q 0.37 TCGA-2W-A8YY-01 20 50049278 50049278 G A NFATC2 Missense_Mutation p.T683M 0.25 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 20 50179159 50179159 C T NFATC2 Missense_Mutation p.E4K 0.28 tolerated_low_confidence(0.15) benign(0.024) TCGA-2W-A8YY-01 20 50224117 50224117 G A ATP9A Missense_Mutation p.P918S 0.42 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 20 50230311 50230311 G A ATP9A Missense_Mutation p.R826W 0.30 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 20 50286571 50286571 C T ATP9A Missense_Mutation p.E420K 0.47 deleterious(0.04) benign(0.26) TCGA-2W-A8YY-01 20 50287703 50287703 C T ATP9A Silent p.T377T 0.47 TCGA-2W-A8YY-01 20 50290788 50290788 A G ATP9A Missense_Mutation p.V314A 0.39 deleterious(0.01) benign(0.043) TCGA-2W-A8YY-01 20 50310587 50310587 C T ATP9A Missense_Mutation p.R201Q 0.26 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 20 50407792 50407792 G A SALL4 Silent p.F410F 0.56 TCGA-2W-A8YY-01 20 50407818 50407818 G A SALL4 Missense_Mutation p.R402C 0.15 deleterious(0) probably_damaging(0.944) TCGA-2W-A8YY-01 20 50407897 50407897 G A SALL4 Silent p.D375D 0.29 TCGA-2W-A8YY-01 20 50407930 50407930 C T SALL4 Silent p.P364P 0.60 TCGA-2W-A8YY-01 20 50408237 50408237 C A SALL4 Missense_Mutation p.S262I 0.50 deleterious(0.03) possibly_damaging(0.534) TCGA-2W-A8YY-01 20 50701581 50701581 G A ZFP64 Missense_Mutation p.H485Y 0.33 deleterious(0) possibly_damaging(0.718) TCGA-2W-A8YY-01 20 50769771 50769771 G A ZFP64 Silent p.C320C 0.31 TCGA-2W-A8YY-01 20 50769896 50769896 G A ZFP64 Missense_Mutation p.R279W 0.31 deleterious(0) possibly_damaging(0.556) TCGA-2W-A8YY-01 20 5086838 5086838 T C TMEM230 Missense_Mutation p.K136R 0.40 tolerated(0.11) benign(0.415) TCGA-2W-A8YY-01 20 5154223 5154223 C T CDS2 Missense_Mutation p.R38W 0.37 deleterious(0) possibly_damaging(0.654) TCGA-2W-A8YY-01 20 51871233 51871233 C A TSHZ2 Silent p.A412A 0.44 TCGA-2W-A8YY-01 20 52198090 52198090 C T ZNF217 Missense_Mutation p.A426T 0.34 tolerated(0.62) benign(0.001) TCGA-2W-A8YY-01 20 52612551 52612551 A G BCAS1 Silent p.L254L 0.29 TCGA-2W-A8YY-01 20 52645395 52645395 C T BCAS1 Missense_Mutation p.E87K 0.32 tolerated(0.57) benign(0.043) TCGA-2W-A8YY-01 20 54572726 54572726 C T CBLN4 3'UTR 0.33 TCGA-2W-A8YY-01 20 54573735 54573735 T C CBLN4 Missense_Mutation p.T162A 0.49 deleterious(0) benign(0.411) TCGA-2W-A8YY-01 20 54941418 54941418 G T FAM210B 3'UTR 0.47 TCGA-2W-A8YY-01 20 54961325 54961325 G A AURKA Missense_Mutation p.P103S 0.49 tolerated(0.25) benign(0.031) TCGA-2W-A8YY-01 20 54961331 54961331 G A AURKA Missense_Mutation p.P101S 0.35 tolerated(0.26) benign(0.002) TCGA-2W-A8YY-01 20 54972865 54972865 C T CSTF1 Missense_Mutation p.P205S 0.49 tolerated(0.53) probably_damaging(0.996) TCGA-2W-A8YY-01 20 54978728 54978728 C T CSTF1 Missense_Mutation p.T414M 0.21 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 20 55033472 55033472 G A CASS4 Missense_Mutation p.R677Q 0.32 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 20 55093207 55093207 C T RTFDC1 Silent p.I269I 0.10 TCGA-2W-A8YY-01 20 55206443 55206443 G A TFAP2C Silent p.S77S 0.08 TCGA-2W-A8YY-01 20 55206458 55206458 G A TFAP2C Silent p.A82A 0.28 TCGA-2W-A8YY-01 20 5542117 5542117 C T GPCPD1 Silent p.Q463Q 0.41 TCGA-2W-A8YY-01 20 55982733 55982733 C T RBM38 Missense_Mutation p.P184L 0.22 tolerated(0.14) benign(0.003) TCGA-2W-A8YY-01 20 55982772 55982772 C T RBM38 Missense_Mutation p.A197V 0.29 tolerated_low_confidence(0.06) benign(0.211) TCGA-2W-A8YY-01 20 55982871 55982871 C T RBM38 Missense_Mutation p.A230V 0.42 deleterious_low_confidence(0) benign(0.033) TCGA-2W-A8YY-01 20 56098208 56098208 C T CTCFL Missense_Mutation p.V224M 0.51 tolerated(0.42) benign(0.045) TCGA-2W-A8YY-01 20 56140623 56140623 C T PCK1 Silent p.I544I 0.41 TCGA-2W-A8YY-01 20 56225002 56225002 C T PMEPA1 3'UTR 0.27 TCGA-2W-A8YY-01 20 56227136 56227136 C A PMEPA1 Missense_Mutation p.K279N 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 56227620 56227620 C T PMEPA1 Missense_Mutation p.R118H 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 56284654 56284654 G A PMEPA1 5'UTR 0.29 TCGA-2W-A8YY-01 20 56810346 56810346 G A PPP4R1L 3'Flank 0.44 TCGA-2W-A8YY-01 20 56846506 56846507 - A PPP4R1L Intron 0.27 TCGA-2W-A8YY-01 20 56935520 56935520 G A RAB22A 3'UTR 0.35 TCGA-2W-A8YY-01 20 56936313 56936313 C T RAB22A 3'UTR 0.35 TCGA-2W-A8YY-01 20 56993350 56993350 G T VAPB Missense_Mutation p.A48S 0.41 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 20 57244510 57244510 G A STX16 Splice_Site p.X186_splice 0.32 TCGA-2W-A8YY-01 20 57252332 57252332 G A STX16 3'UTR 0.49 TCGA-2W-A8YY-01 20 57252466 57252466 G A STX16 3'UTR 0.31 TCGA-2W-A8YY-01 20 57415470 57415470 C T RP4-806M20.3 5'Flank 0.29 TCGA-2W-A8YY-01 20 57415495 57415495 G A RP4-806M20.3 5'Flank 0.25 TCGA-2W-A8YY-01 20 57415596 57415596 C T RP4-806M20.3 5'Flank 0.28 TCGA-2W-A8YY-01 20 57415913 57415913 C T RP4-806M20.3 5'Flank 0.33 TCGA-2W-A8YY-01 20 57430103 57430103 C T GNAS Missense_Mutation p.R595W 0.35 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-2W-A8YY-01 20 57564673 57564673 A - NELFCD Frame_Shift_Del p.N232Ifs*22 0.21 TCGA-2W-A8YY-01 20 57565028 57565028 G A NELFCD Missense_Mutation p.R276H 0.49 tolerated(0.08) benign(0.376) TCGA-2W-A8YY-01 20 57568803 57568803 G A NELFCD Missense_Mutation p.R540H 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 57597947 57597947 C T TUBB1 Silent p.S35S 0.24 TCGA-2W-A8YY-01 20 57599120 57599120 G A TUBB1 Missense_Mutation p.R213H 0.35 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-2W-A8YY-01 20 57611598 57611598 G A SLMO2 Silent p.T131T 0.28 TCGA-2W-A8YY-01 20 57766093 57766093 A G ZNF831 Missense_Mutation p.T7A 0.44 tolerated(0.18) benign(0.014) TCGA-2W-A8YY-01 20 57767574 57767574 C T ZNF831 Silent p.P500P 0.55 TCGA-2W-A8YY-01 20 57767896 57767896 G A ZNF831 Missense_Mutation p.G608S 0.27 tolerated(1) benign(0.055) TCGA-2W-A8YY-01 20 57769251 57769251 G A ZNF831 Silent p.T1059T 0.35 TCGA-2W-A8YY-01 20 57769661 57769661 C T ZNF831 Missense_Mutation p.A1196V 0.17 tolerated(0.59) benign(0.003) TCGA-2W-A8YY-01 20 58455428 58455428 C A SYCP2 Silent p.P957P 0.41 TCGA-2W-A8YY-01 20 58490236 58490236 C A SYCP2 Missense_Mutation p.R206S 0.44 deleterious(0) possibly_damaging(0.869) TCGA-2W-A8YY-01 20 58520808 58520808 G A FAM217B 3'UTR 0.33 TCGA-2W-A8YY-01 20 58545224 58545224 C T CDH26 Missense_Mutation p.P72S 0.49 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 58560185 58560185 G A CDH26 Splice_Site p.X279_splice 0.13 TCGA-2W-A8YY-01 20 58564100 58564100 G T CDH26 Missense_Mutation p.D389Y 0.41 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 20 58608622 58608622 G A CDH26 Missense_Mutation p.R409Q 0.48 tolerated_low_confidence(0.06) benign(0.412) TCGA-2W-A8YY-01 20 58645713 58645713 G A C20orf197 Missense_Mutation p.G44D 0.38 tolerated_low_confidence(0.29) benign(0.018) TCGA-2W-A8YY-01 20 5903886 5903886 G T CHGB Nonsense_Mutation p.G366* 0.21 TCGA-2W-A8YY-01 20 5904096 5904096 G T CHGB Nonsense_Mutation p.E436* 0.21 TCGA-2W-A8YY-01 20 5919207 5919207 G A TRMT6 Nonsense_Mutation p.R490* 0.44 TCGA-2W-A8YY-01 20 5939266 5939266 T C MCM8 Missense_Mutation p.V228A 0.39 tolerated(0.17) probably_damaging(0.997) TCGA-2W-A8YY-01 20 5965533 5965533 G A MCM8 Missense_Mutation p.A614T 0.43 tolerated(0.16) possibly_damaging(0.537) TCGA-2W-A8YY-01 20 6022501 6022501 C T LRRN4 Missense_Mutation p.E464K 0.46 tolerated(0.89) benign(0.004) TCGA-2W-A8YY-01 20 60419780 60419780 C T CDH4 Silent p.G211G 0.45 TCGA-2W-A8YY-01 20 60504690 60504690 C T CDH4 Missense_Mutation p.R677C 0.14 deleterious(0) possibly_damaging(0.462) TCGA-2W-A8YY-01 20 60512172 60512172 C T CDH4 3'UTR 0.27 TCGA-2W-A8YY-01 20 60578902 60578902 C T TAF4 Silent p.L752L 0.32 TCGA-2W-A8YY-01 20 60639526 60639526 C A TAF4 Missense_Mutation p.Q447H 0.50 probably_damaging(0.965) TCGA-2W-A8YY-01 20 6064802 6064802 G A FERMT1 Missense_Mutation p.R535W 0.33 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 20 60864367 60864367 C T OSBPL2 Silent p.G410G 0.65 TCGA-2W-A8YY-01 20 60881352 60881352 G A ADRM1 Missense_Mutation p.G144S 0.37 tolerated(0.12) benign(0.381) TCGA-2W-A8YY-01 20 60882432 60882432 C T ADRM1 Silent p.L183L 0.30 TCGA-2W-A8YY-01 20 60887026 60887026 G T LAMA5 Silent p.G3195G 0.43 TCGA-2W-A8YY-01 20 60887236 60887236 G A LAMA5 Missense_Mutation p.A3166V 0.54 benign(0.043) TCGA-2W-A8YY-01 20 60887690 60887690 C T LAMA5 Silent p.P3075P 0.38 TCGA-2W-A8YY-01 20 60889912 60889912 G A LAMA5 Silent p.S2713S 0.09 TCGA-2W-A8YY-01 20 60890244 60890244 G A LAMA5 Silent p.I2629I 0.43 TCGA-2W-A8YY-01 20 60892451 60892451 G A LAMA5 Silent p.A2487A 0.33 TCGA-2W-A8YY-01 20 60897743 60897743 C T LAMA5 Missense_Mutation p.V2046M 0.24 benign(0.272) TCGA-2W-A8YY-01 20 60909363 60909363 T C LAMA5 Missense_Mutation p.H873R 0.41 probably_damaging(0.957) TCGA-2W-A8YY-01 20 60911472 60911472 G A LAMA5 Silent p.H749H 0.33 TCGA-2W-A8YY-01 20 60921799 60921799 C T LAMA5 Missense_Mutation p.R377H 0.33 benign(0.252) TCGA-2W-A8YY-01 20 60922042 60922042 G A LAMA5 Silent p.C333C 0.17 TCGA-2W-A8YY-01 20 60927111 60927111 G A LAMA5 Missense_Mutation p.R238C 0.37 probably_damaging(1) TCGA-2W-A8YY-01 20 60937574 60937574 C T LAMA5 Missense_Mutation p.S111N 0.53 probably_damaging(0.985) TCGA-2W-A8YY-01 20 61040973 61040973 G T GATA5 Missense_Mutation p.P277Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 61297866 61297866 G A SLCO4A1 Missense_Mutation p.V471I 0.40 tolerated(1) benign(0.047) TCGA-2W-A8YY-01 20 61299835 61299835 C T SLCO4A1 Silent p.V606V 0.32 TCGA-2W-A8YY-01 20 61340767 61340767 T C NTSR1 Missense_Mutation p.Y70H 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 61428579 61428579 C T MRGBP Missense_Mutation p.A89V 0.46 tolerated(0.09) benign(0.147) TCGA-2W-A8YY-01 20 61431715 61431716 - T MRGBP 3'UTR 0.24 TCGA-2W-A8YY-01 20 61431876 61431876 C T MRGBP 3'UTR 0.50 TCGA-2W-A8YY-01 20 61443844 61443844 C T OGFR Missense_Mutation p.R293W 0.37 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 20 61444376 61444376 C T OGFR Missense_Mutation p.A470V 0.38 tolerated(0.53) benign(0.001) TCGA-2W-A8YY-01 20 61453126 61453126 C T COL9A3 Silent p.S129S 0.49 TCGA-2W-A8YY-01 20 61457562 61457562 C T COL9A3 Missense_Mutation p.R231W 0.50 deleterious(0.01) unknown(0) TCGA-2W-A8YY-01 20 61477100 61477100 G A TCFL5 Intron 0.08 TCGA-2W-A8YY-01 20 61510599 61510599 C T DIDO1 Missense_Mutation p.A2237T 0.11 possibly_damaging(0.499) TCGA-2W-A8YY-01 20 61511246 61511246 G A DIDO1 Missense_Mutation p.P2021L 0.40 benign(0.015) TCGA-2W-A8YY-01 20 61511407 61511407 G A DIDO1 Silent p.F1967F 0.47 TCGA-2W-A8YY-01 20 61513348 61513348 A C DIDO1 Silent p.T1320T 0.38 TCGA-2W-A8YY-01 20 61522358 61522358 G A DIDO1 Silent p.S1165S 0.30 TCGA-2W-A8YY-01 20 61541167 61541167 C T DIDO1 Missense_Mutation p.D349N 0.30 possibly_damaging(0.787) TCGA-2W-A8YY-01 20 61542807 61542807 G - DIDO1 Frame_Shift_Del p.P53Hfs*26 0.26 TCGA-2W-A8YY-01 20 61574512 61574512 C T GID8 Missense_Mutation p.R98W 0.46 deleterious(0.01) probably_damaging(0.987) TCGA-2W-A8YY-01 20 61576278 61576278 G A GID8 3'UTR 0.33 TCGA-2W-A8YY-01 20 61576566 61576566 G A GID8 3'UTR 0.60 TCGA-2W-A8YY-01 20 61809909 61809909 C T MIR124-3 RNA 0.23 TCGA-2W-A8YY-01 20 61827014 61827014 G A YTHDF1 3'UTR 0.38 TCGA-2W-A8YY-01 20 61833919 61833919 T C YTHDF1 Missense_Mutation p.Y458C 0.37 deleterious(0) possibly_damaging(0.838) TCGA-2W-A8YY-01 20 61833927 61833927 G A YTHDF1 Silent p.P455P 0.50 TCGA-2W-A8YY-01 20 61834081 61834081 C T YTHDF1 Missense_Mutation p.R404H 0.50 deleterious(0.03) possibly_damaging(0.903) TCGA-2W-A8YY-01 20 61870833 61870833 G A BIRC7 Missense_Mutation p.R258H 0.36 tolerated(0.13) benign(0.022) TCGA-2W-A8YY-01 20 61881384 61881384 T C NKAIN4 Missense_Mutation p.Y32C 0.33 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 20 61908635 61908635 A G ARFGAP1 Missense_Mutation p.T141A 0.36 tolerated(0.15) benign(0.003) TCGA-2W-A8YY-01 20 61910260 61910260 G A ARFGAP1 Silent p.G180G 0.35 TCGA-2W-A8YY-01 20 61919180 61919180 G A ARFGAP1 Silent p.P400P 0.37 TCGA-2W-A8YY-01 20 61919242 61919242 G A ARFGAP1 3'UTR 0.47 TCGA-2W-A8YY-01 20 61942887 61942887 G A COL20A1 Missense_Mutation p.R512Q 0.38 tolerated(0.2) benign(0.028) TCGA-2W-A8YY-01 20 61944532 61944532 G A COL20A1 Missense_Mutation p.D714N 0.09 deleterious(0.04) benign(0.005) TCGA-2W-A8YY-01 20 61982172 61982172 G A CHRNA4 Silent p.R197R 0.24 TCGA-2W-A8YY-01 20 62038570 62038570 C T KCNQ2 Silent p.R682R 0.31 TCGA-2W-A8YY-01 20 62045469 62045469 C A KCNQ2 Missense_Mutation p.G535C 0.43 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 20 62070046 62070046 T C KCNQ2 Missense_Mutation p.K319E 0.67 deleterious(0) possibly_damaging(0.701) TCGA-2W-A8YY-01 20 62076114 62076114 C T KCNQ2 Silent p.A196A 0.32 TCGA-2W-A8YY-01 20 62124595 62124595 C T EEF1A2 Missense_Mutation p.A223T 0.44 tolerated_low_confidence(0.05) benign(0.057) TCGA-2W-A8YY-01 20 62195123 62195123 C T HELZ2 Silent p.Q1684Q 0.32 TCGA-2W-A8YY-01 20 62195531 62195531 C T HELZ2 Silent p.T1548T 0.35 TCGA-2W-A8YY-01 20 62195619 62195619 C T HELZ2 Missense_Mutation p.R1519H 0.19 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 62196426 62196426 A G HELZ2 Missense_Mutation p.V1250A 0.53 deleterious(0.03) benign(0.395) TCGA-2W-A8YY-01 20 62198515 62198515 C T HELZ2 Silent p.A732A 0.26 TCGA-2W-A8YY-01 20 62200557 62200557 C A HELZ2 Missense_Mutation p.Q344H 0.48 deleterious(0.01) probably_damaging(0.935) TCGA-2W-A8YY-01 20 62221231 62221231 C T GMEB2 3'UTR 0.35 TCGA-2W-A8YY-01 20 62224377 62224377 G A GMEB2 Silent p.T226T 0.28 TCGA-2W-A8YY-01 20 62229175 62229175 G A GMEB2 Silent p.H132H 0.23 TCGA-2W-A8YY-01 20 62305397 62305397 G A RTEL1 Silent p.A314A 0.38 TCGA-2W-A8YY-01 20 62320988 62320988 G A RTEL1 Missense_Mutation p.G695E 0.28 tolerated(0.19) benign(0.013) TCGA-2W-A8YY-01 20 62324243 62324243 C T RTEL1 Missense_Mutation p.A937V 0.40 deleterious(0.03) benign(0.098) TCGA-2W-A8YY-01 20 62338457 62338457 C A ARFRP1 5'UTR 0.46 TCGA-2W-A8YY-01 20 62367298 62367298 C T ZGPAT 3'UTR 0.32 TCGA-2W-A8YY-01 20 62367366 62367366 C T ZGPAT 3'UTR 0.26 TCGA-2W-A8YY-01 20 62369785 62369785 G A RP4-583P15.14 Missense_Mutation p.R55H 0.41 tolerated(0.13) possibly_damaging(0.715) TCGA-2W-A8YY-01 20 62374241 62374241 C T SLC2A4RG Silent p.R354R 0.31 TCGA-2W-A8YY-01 20 62374492 62374492 C T SLC2A4RG 3'UTR 0.29 TCGA-2W-A8YY-01 20 62493659 62493659 G A ABHD16B Missense_Mutation p.A256T 0.30 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 20 62494056 62494056 G A ABHD16B Missense_Mutation p.R388H 0.33 tolerated(0.12) benign(0.005) TCGA-2W-A8YY-01 20 62505115 62505115 G A TPD52L2 Missense_Mutation p.G87E 0.38 tolerated(0.66) benign(0.007) TCGA-2W-A8YY-01 20 62562222 62562222 G A DNAJC5 Missense_Mutation p.G114S 0.39 tolerated(0.22) possibly_damaging(0.484) TCGA-2W-A8YY-01 20 62562882 62562882 C T DNAJC5 Silent p.A186A 0.35 TCGA-2W-A8YY-01 20 62571393 62571393 C T UCKL1 Missense_Mutation p.R528H 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 62591253 62591253 C T ZNF512B Silent p.A889A 0.53 TCGA-2W-A8YY-01 20 62598787 62598787 C A ZNF512B Missense_Mutation p.G71W 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 62607161 62607161 G A SAMD10 Missense_Mutation p.A157V 0.32 deleterious(0.02) benign(0.212) TCGA-2W-A8YY-01 20 62626345 62626345 G A PRPF6 Missense_Mutation p.R172Q 0.44 tolerated(0.05) possibly_damaging(0.465) TCGA-2W-A8YY-01 20 62679608 62679608 C T SOX18 Missense_Mutation p.A356T 0.41 tolerated(0.25) benign(0.001) TCGA-2W-A8YY-01 20 62701918 62701918 G A TCEA2 Missense_Mutation p.R250H 0.39 deleterious(0.04) possibly_damaging(0.832) TCGA-2W-A8YY-01 20 62701960 62701960 G T TCEA2 Missense_Mutation p.C264F 0.11 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 20 62714898 62714898 C T C20orf201 Missense_Mutation p.G188E 0.36 tolerated_low_confidence(0.08) benign(0.012) TCGA-2W-A8YY-01 20 62871243 62871243 G A MYT1 Missense_Mutation p.R1075H 0.50 probably_damaging(0.999) TCGA-2W-A8YY-01 20 62873185 62873186 - A MYT1 3'UTR 0.24 TCGA-2W-A8YY-01 20 629423 629423 G A SRXN1 Missense_Mutation p.L117F 0.35 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 20 644650 644650 A G SCRT2 Missense_Mutation p.S197P 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 746350 746350 G T SLC52A3 Silent p.L23L 0.38 TCGA-2W-A8YY-01 20 8696773 8696773 C T PLCB1 Intron 0.36 TCGA-2W-A8YY-01 20 8719986 8719986 C T PLCB1 Missense_Mutation p.P763S 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 20 947910 947910 G A RSPO4 Missense_Mutation p.R106W 0.46 deleterious(0) probably_damaging(0.944) TCGA-2W-A8YY-01 20 9510901 9510901 T C LAMP5 3'UTR 0.35 TCGA-2W-A8YY-01 21 10920116 10920116 C T TPTE Missense_Mutation p.E380K 0.11 deleterious(0.01) benign(0.021) TCGA-2W-A8YY-01 21 10951302 10951302 A C TPTE Missense_Mutation p.F137C 0.16 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 10951414 10951414 A G TPTE Missense_Mutation p.F100L 0.14 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 21 14417518 14417518 A C RNU6-614P 5'Flank 0.17 TCGA-2W-A8YY-01 21 14417586 14417586 T C RNU6-614P 5'Flank 0.14 TCGA-2W-A8YY-01 21 15219079 15219079 C T CYP4F29P Splice_Site 0.30 TCGA-2W-A8YY-01 21 15399843 15399843 C A AP001347.6 RNA 0.33 TCGA-2W-A8YY-01 21 15646318 15646318 C A ABCC13 RNA 0.23 TCGA-2W-A8YY-01 21 15745889 15745889 G A HSPA13 3'UTR 0.25 TCGA-2W-A8YY-01 21 15753774 15753774 C T HSPA13 Missense_Mutation p.G39D 0.21 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 16336527 16336527 G A NRIP1 3'UTR 0.33 TCGA-2W-A8YY-01 21 16336800 16336800 C T NRIP1 3'UTR 0.36 TCGA-2W-A8YY-01 21 16336915 16336915 T G NRIP1 3'UTR 0.41 TCGA-2W-A8YY-01 21 16337404 16337404 C T NRIP1 Missense_Mutation p.S1037N 0.10 tolerated(0.65) benign(0.004) TCGA-2W-A8YY-01 21 16338140 16338140 C T NRIP1 Missense_Mutation p.A792T 0.40 tolerated(1) benign(0.015) TCGA-2W-A8YY-01 21 17181205 17181205 G A USP25 Splice_Site p.X286_splice 0.39 TCGA-2W-A8YY-01 21 19165770 19165770 G A C21orf91 Nonsense_Mutation p.R286* 0.42 TCGA-2W-A8YY-01 21 19169101 19169101 G T C21orf91 Silent p.I154I 0.38 TCGA-2W-A8YY-01 21 19639133 19639133 G A CHODL 3'UTR 0.19 TCGA-2W-A8YY-01 21 19666949 19666949 G A TMPRSS15 Missense_Mutation p.S761F 0.40 tolerated(0.5) benign(0.385) TCGA-2W-A8YY-01 21 19704486 19704486 G A TMPRSS15 Silent p.D523D 0.15 TCGA-2W-A8YY-01 21 27071029 27071029 T C JAM2 Silent p.A145A 0.46 TCGA-2W-A8YY-01 21 27113922 27113922 G T GABPA Nonsense_Mutation p.E5* 0.17 TCGA-2W-A8YY-01 21 27124323 27124323 C A GABPA Missense_Mutation p.L111I 0.37 tolerated(0.17) possibly_damaging(0.832) TCGA-2W-A8YY-01 21 27284114 27284114 G A APP Silent p.D616D 0.53 TCGA-2W-A8YY-01 21 27394235 27394235 G A APP Silent p.Y262Y 0.56 TCGA-2W-A8YY-01 21 27852650 27852650 C A CYYR1 Missense_Mutation p.R92M 0.29 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 21 28214704 28214704 T C ADAMTS1 Missense_Mutation p.D344G 0.12 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 28214747 28214747 G A ADAMTS1 Missense_Mutation p.R330W 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 28290482 28290482 G A ADAMTS5 3'UTR 0.12 TCGA-2W-A8YY-01 21 28296377 28296377 A C ADAMTS5 Missense_Mutation p.C930G 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 21 28296458 28296458 G A ADAMTS5 Nonsense_Mutation p.Q903* 0.22 TCGA-2W-A8YY-01 21 28296713 28296713 G T ADAMTS5 Missense_Mutation p.L818M 0.34 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 21 28302250 28302250 T C ADAMTS5 Missense_Mutation p.D727G 0.40 deleterious(0.01) possibly_damaging(0.543) TCGA-2W-A8YY-01 21 28306816 28306816 C T ADAMTS5 Missense_Mutation p.C553Y 0.36 deleterious(0) possibly_damaging(0.678) TCGA-2W-A8YY-01 21 28337806 28337806 T C ADAMTS5 Missense_Mutation p.Y302C 0.53 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 30329113 30329113 A G LTN1 Missense_Mutation p.V1063A 0.32 tolerated(0.91) benign(0.023) TCGA-2W-A8YY-01 21 30422429 30422429 G A USP16 Missense_Mutation p.R708H 0.33 tolerated(0.13) benign(0.104) TCGA-2W-A8YY-01 21 30428728 30428728 A C CCT8 3'UTR 0.22 TCGA-2W-A8YY-01 21 30909580 30909580 G A GRIK1 Nonsense_Mutation p.R941* 0.14 TCGA-2W-A8YY-01 21 31744474 31744474 G A KRTAP13-2 Missense_Mutation p.R20C 0.29 tolerated(0.23) benign(0.005) TCGA-2W-A8YY-01 21 31802910 31802910 G A KRTAP13-4 Missense_Mutation p.G106E 0.37 deleterious(0) probably_damaging(0.934) TCGA-2W-A8YY-01 21 31859507 31859507 G A KRTAP19-2 3'UTR 0.11 TCGA-2W-A8YY-01 21 31973587 31973587 G T KRTAP22-1 3'UTR 0.27 TCGA-2W-A8YY-01 21 32201941 32201941 T C KRTAP7-1 RNA 0.40 TCGA-2W-A8YY-01 21 32493107 32493107 C T TIAM1 Missense_Mutation p.R1452Q 0.58 deleterious(0.05) possibly_damaging(0.866) TCGA-2W-A8YY-01 21 33044342 33044342 G A SCAF4 Silent p.D938D 0.35 TCGA-2W-A8YY-01 21 33044418 33044418 C A SCAF4 Missense_Mutation p.G913V 0.21 unknown(0) TCGA-2W-A8YY-01 21 33065709 33065709 G A SCAF4 Nonsense_Mutation p.R471* 0.39 TCGA-2W-A8YY-01 21 33067284 33067284 G A SCAF4 Missense_Mutation p.P360S 0.42 probably_damaging(0.982) TCGA-2W-A8YY-01 21 33373878 33373878 T G HUNK 3'UTR 0.23 TCGA-2W-A8YY-01 21 33725214 33725214 C T URB1 Silent p.A806A 0.45 TCGA-2W-A8YY-01 21 33755832 33755832 C T URB1 Missense_Mutation p.A156T 0.44 deleterious(0.02) possibly_damaging(0.7) TCGA-2W-A8YY-01 21 33948000 33948000 G A AP000275.65 3'Flank 0.30 TCGA-2W-A8YY-01 21 33974655 33974655 C T AP000275.65 Intron 0.39 TCGA-2W-A8YY-01 21 34002759 34002759 G T SYNJ1 3'Flank 0.54 TCGA-2W-A8YY-01 21 34038369 34038369 G A SYNJ1 Missense_Mutation p.L716F 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-2W-A8YY-01 21 34051100 34051100 A G SYNJ1 Silent p.G494G 0.25 TCGA-2W-A8YY-01 21 34123443 34123443 G A PAXBP1 Missense_Mutation p.R532W 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 34127613 34127613 G A PAXBP1 Nonsense_Mutation p.R479* 0.23 TCGA-2W-A8YY-01 21 34166467 34166467 G A C21orf62 Missense_Mutation p.A89V 0.46 tolerated(1) benign(0.006) TCGA-2W-A8YY-01 21 34648943 34648943 G A IL10RB Silent p.T72T 0.43 TCGA-2W-A8YY-01 21 34717554 34717554 G A IFNAR1 Missense_Mutation p.E226K 0.32 tolerated(0.19) benign(0.003) TCGA-2W-A8YY-01 21 34809144 34809144 G T IFNGR2 Missense_Mutation p.D297Y 0.37 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 21 34841105 34841105 C T TMEM50B Missense_Mutation p.A30T 0.21 deleterious(0) probably_damaging(0.957) TCGA-2W-A8YY-01 21 34876557 34876557 G A GART Silent p.V969V 0.25 TCGA-2W-A8YY-01 21 34900849 34900849 G A GART Silent p.C291C 0.19 TCGA-2W-A8YY-01 21 34923133 34923133 G A SON Silent p.T532T 0.40 TCGA-2W-A8YY-01 21 34925243 34925243 G T SON Missense_Mutation p.D1236Y 0.30 possibly_damaging(0.713) TCGA-2W-A8YY-01 21 34929519 34929519 C A SON Missense_Mutation p.A2073D 0.39 unknown(0) TCGA-2W-A8YY-01 21 34932200 34932200 G A SON Intron 0.29 TCGA-2W-A8YY-01 21 34949573 34949573 A G SON 3'UTR 0.42 TCGA-2W-A8YY-01 21 34967857 34967857 G A CRYZL1 Intron 0.32 TCGA-2W-A8YY-01 21 35147320 35147320 C T ITSN1 Nonsense_Mutation p.R502* 0.39 TCGA-2W-A8YY-01 21 35154383 35154383 G A ITSN1 Silent p.E590E 0.37 TCGA-2W-A8YY-01 21 35209791 35209791 G A ITSN1 Intron 0.36 TCGA-2W-A8YY-01 21 35470645 35470645 G A SLC5A3 3'UTR 0.44 TCGA-2W-A8YY-01 21 35477581 35477581 A G SLC5A3 3'UTR 0.43 TCGA-2W-A8YY-01 21 35751726 35751726 G A SMIM11 Splice_Site 0.31 TCGA-2W-A8YY-01 21 35791644 35791644 G A AP000322.53 Nonsense_Mutation p.Q98* 0.44 TCGA-2W-A8YY-01 21 36161682 36161682 A G RUNX1 3'UTR 0.31 TCGA-2W-A8YY-01 21 36259299 36259299 G A RUNX1 Silent p.G64G 0.33 TCGA-2W-A8YY-01 21 37408319 37408319 C T SETD4 3'UTR 0.45 TCGA-2W-A8YY-01 21 37416164 37416164 C T SETD4 Missense_Mutation p.G273S 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 37425881 37425881 C T SETD4 Silent p.Q69Q 0.39 TCGA-2W-A8YY-01 21 37443349 37443349 C - CBR1 Frame_Shift_Del p.Q132Kfs*5 0.29 TCGA-2W-A8YY-01 21 37586401 37586401 C T DOPEY2 Silent p.T309T 0.34 TCGA-2W-A8YY-01 21 37603168 37603168 C T DOPEY2 Silent p.L696L 0.12 TCGA-2W-A8YY-01 21 37612076 37612076 G A DOPEY2 Missense_Mutation p.V964M 0.11 tolerated(0.54) probably_damaging(0.999) TCGA-2W-A8YY-01 21 37666505 37666505 T C DOPEY2 3'UTR 0.40 TCGA-2W-A8YY-01 21 37717226 37717226 T C MORC3 Missense_Mutation p.I301T 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 21 37741916 37741916 C T MORC3 Silent p.T750T 0.34 TCGA-2W-A8YY-01 21 37742093 37742093 G A MORC3 Missense_Mutation p.M809I 0.12 tolerated(0.45) benign(0.017) TCGA-2W-A8YY-01 21 38092134 38092134 G A SIM2 Missense_Mutation p.G121S 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 21 38092138 38092138 A G SIM2 Missense_Mutation p.N122S 0.40 tolerated(0.27) possibly_damaging(0.897) TCGA-2W-A8YY-01 21 38124946 38124946 T G HLCS 3'UTR 0.44 TCGA-2W-A8YY-01 21 38380463 38380463 G A RIPPLY3 Silent p.A37A 0.33 TCGA-2W-A8YY-01 21 38459524 38459524 T C TTC3 Intron 0.24 TCGA-2W-A8YY-01 21 38516838 38516838 C T TTC3 Missense_Mutation p.L596F 0.33 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 21 38524266 38524266 G A TTC3 Missense_Mutation p.A784T 0.29 deleterious(0.04) probably_damaging(0.987) TCGA-2W-A8YY-01 21 38538384 38538384 C T TTC3 Nonsense_Mutation p.R1290* 0.33 TCGA-2W-A8YY-01 21 38568324 38568324 C T TTC3 Missense_Mutation p.P1856S 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 38569902 38569902 C T TTC3 Nonsense_Mutation p.R1871* 0.36 TCGA-2W-A8YY-01 21 38570211 38570211 A G TTC3 Missense_Mutation p.Y1912C 0.52 tolerated(0.18) benign(0) TCGA-2W-A8YY-01 21 38845106 38845106 G A DYRK1A Missense_Mutation p.R44H 0.31 tolerated_low_confidence(0.83) benign(0) TCGA-2W-A8YY-01 21 38858865 38858865 C T DYRK1A Nonsense_Mutation p.R205* 0.26 TCGA-2W-A8YY-01 21 38865340 38865340 C T DYRK1A Missense_Mutation p.R325C 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 38884818 38884818 C T DYRK1A Missense_Mutation p.P759L 0.20 deleterious_low_confidence(0) benign(0.025) TCGA-2W-A8YY-01 21 38886703 38886703 C A DYRK1A 3'Flank 0.34 TCGA-2W-A8YY-01 21 38887443 38887443 G A DYRK1A 3'Flank 0.33 TCGA-2W-A8YY-01 21 39493298 39493298 C A DSCR4 Missense_Mutation p.D18Y 0.37 probably_damaging(0.934) TCGA-2W-A8YY-01 21 39673172 39673172 C T KCNJ15 3'UTR 0.19 TCGA-2W-A8YY-01 21 40188985 40188985 G A ETS2 Missense_Mutation p.V187I 0.37 tolerated(0.55) benign(0.007) TCGA-2W-A8YY-01 21 40567929 40567929 C T BRWD1 Intron 0.21 TCGA-2W-A8YY-01 21 40571353 40571353 G A BRWD1 Silent p.H1663H 0.33 TCGA-2W-A8YY-01 21 40670451 40670451 C T BRWD1 Missense_Mutation p.G86S 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-2W-A8YY-01 21 40778076 40778076 G A LCA5L Missense_Mutation p.S582F 0.42 deleterious(0.02) possibly_damaging(0.584) TCGA-2W-A8YY-01 21 40883733 40883733 C A SH3BGR 3'UTR 0.39 TCGA-2W-A8YY-01 21 41034712 41034712 G T B3GALT5 3'UTR 0.53 TCGA-2W-A8YY-01 21 41137747 41137747 G A IGSF5 Missense_Mutation p.R129H 0.55 tolerated(0.05) benign(0.031) TCGA-2W-A8YY-01 21 41684042 41684042 G A DSCAM Silent p.A676A 0.49 TCGA-2W-A8YY-01 21 41719645 41719645 G A DSCAM Missense_Mutation p.R388C 0.40 deleterious(0.04) probably_damaging(0.959) TCGA-2W-A8YY-01 21 41741120 41741120 C A DSCAM Missense_Mutation p.Q187H 0.31 deleterious(0.03) probably_damaging(0.992) TCGA-2W-A8YY-01 21 42609510 42609510 G A BACE2 Missense_Mutation p.V158I 0.33 deleterious(0.01) benign(0.232) TCGA-2W-A8YY-01 21 42647486 42647486 C T BACE2 Missense_Mutation p.R498C 0.50 tolerated(0.08) possibly_damaging(0.462) TCGA-2W-A8YY-01 21 42778675 42778675 C T MX2 Missense_Mutation p.T552M 0.34 tolerated(0.08) benign(0.004) TCGA-2W-A8YY-01 21 42840442 42840442 C T TMPRSS2 Missense_Mutation p.A436T 0.37 tolerated(0.35) benign(0.345) TCGA-2W-A8YY-01 21 42870081 42870081 C T TMPRSS2 Missense_Mutation p.D31N 0.30 tolerated_low_confidence(0.08) benign(0.003) TCGA-2W-A8YY-01 21 43164100 43164100 G A RIPK4 Silent p.S379S 0.26 TCGA-2W-A8YY-01 21 43164112 43164112 G T RIPK4 Silent p.S375S 0.40 TCGA-2W-A8YY-01 21 43164187 43164187 G A RIPK4 Silent p.P350P 0.37 TCGA-2W-A8YY-01 21 43166242 43166242 G A RIPK4 Intron 0.48 TCGA-2W-A8YY-01 21 43169322 43169322 G A RIPK4 Missense_Mutation p.P222L 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 43221732 43221732 G A PRDM15 Missense_Mutation p.R1398C 0.17 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-2W-A8YY-01 21 43221743 43221743 G A PRDM15 Missense_Mutation p.T1394I 0.56 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-2W-A8YY-01 21 43240038 43240038 G A PRDM15 Silent p.C1086C 0.45 TCGA-2W-A8YY-01 21 43255580 43255580 G A PRDM15 Silent p.I810I 0.33 TCGA-2W-A8YY-01 21 43332510 43332510 G T C2CD2 Missense_Mutation p.P295H 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 43413490 43413490 C T ZBTB21 Missense_Mutation p.A239T 0.38 tolerated(0.36) benign(0.002) TCGA-2W-A8YY-01 21 43557654 43557654 G A UMODL1 Missense_Mutation p.R1422H 0.22 tolerated(0.22) benign(0.044) TCGA-2W-A8YY-01 21 43645821 43645821 C T ABCG1 Missense_Mutation p.S28L 0.46 tolerated_low_confidence(0.1) benign(0.439) TCGA-2W-A8YY-01 21 43783498 43783498 G A TFF1 Missense_Mutation p.P35L 0.10 deleterious(0.03) probably_damaging(0.987) TCGA-2W-A8YY-01 21 43803246 43803246 C T TMPRSS3 Silent p.S226S 0.37 TCGA-2W-A8YY-01 21 43808587 43808587 G A TMPRSS3 Missense_Mutation p.S124L 0.31 tolerated(0.13) benign(0.025) TCGA-2W-A8YY-01 21 43809121 43809121 C T TMPRSS3 Missense_Mutation p.R80H 0.38 tolerated(0.57) benign(0.052) TCGA-2W-A8YY-01 21 43815509 43815509 C T TMPRSS3 Silent p.P6P 0.20 TCGA-2W-A8YY-01 21 43938535 43938535 A G SLC37A1 5'UTR 0.27 TCGA-2W-A8YY-01 21 43938571 43938571 C T SLC37A1 Nonsense_Mutation p.R3* 0.10 TCGA-2W-A8YY-01 21 44273682 44273682 C T WDR4 Nonsense_Mutation p.W324* 0.42 TCGA-2W-A8YY-01 21 44441515 44441515 C T PKNOX1 Missense_Mutation p.R275W 0.23 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 21 44486403 44486403 C T CBS Missense_Mutation p.G134E 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 44487967 44487967 C T CBS Intron 0.38 TCGA-2W-A8YY-01 21 44487990 44487990 C T CBS Intron 0.50 TCGA-2W-A8YY-01 21 44492154 44492154 G A CBS Silent p.S50S 0.45 TCGA-2W-A8YY-01 21 44835888 44835888 C T SIK1 3'UTR 0.44 TCGA-2W-A8YY-01 21 44841593 44841593 C T SIK1 Missense_Mutation p.D142N 0.14 tolerated(0.64) benign(0.002) TCGA-2W-A8YY-01 21 45094559 45094559 C T RRP1B Nonsense_Mutation p.R134* 0.20 TCGA-2W-A8YY-01 21 45107603 45107603 G A RRP1B Missense_Mutation p.A450T 0.23 tolerated(0.25) possibly_damaging(0.804) TCGA-2W-A8YY-01 21 45178109 45178109 C T PDXK 3'UTR 0.42 TCGA-2W-A8YY-01 21 45181917 45181917 G A PDXK 3'UTR 0.52 TCGA-2W-A8YY-01 21 45232298 45232298 G A AP001053.11 RNA 0.44 TCGA-2W-A8YY-01 21 45390684 45390684 A G AGPAT3 Missense_Mutation p.T221A 0.43 tolerated(0.44) benign(0.102) TCGA-2W-A8YY-01 21 45479036 45479036 T C TRAPPC10 Missense_Mutation p.V244A 0.30 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 21 45655420 45655420 G A ICOSLG Silent p.S144S 0.27 TCGA-2W-A8YY-01 21 45679526 45679526 C T DNMT3L Missense_Mutation p.A74T 0.10 tolerated(0.28) benign(0.001) TCGA-2W-A8YY-01 21 45710728 45710728 G A AIRE Intron 0.34 TCGA-2W-A8YY-01 21 45716313 45716313 G A AIRE Silent p.E517E 0.11 TCGA-2W-A8YY-01 21 45732103 45732103 G A PFKL Missense_Mutation p.G118E 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 21 45736339 45736339 G A PFKL Missense_Mutation p.D290N 0.55 deleterious(0) benign(0) TCGA-2W-A8YY-01 21 45738464 45738464 G A PFKL Missense_Mutation p.E350K 0.28 tolerated(0.19) benign(0.022) TCGA-2W-A8YY-01 21 45745105 45745105 C T PFKL Silent p.G649G 0.24 TCGA-2W-A8YY-01 21 45746083 45746083 G A PFKL Missense_Mutation p.G711S 0.34 deleterious(0) probably_damaging(0.94) TCGA-2W-A8YY-01 21 45755626 45755626 G T C21orf2 Intron 0.33 TCGA-2W-A8YY-01 21 45758177 45758177 G A C21orf2 Intron 0.40 TCGA-2W-A8YY-01 21 45786647 45786647 T C TRPM2 Missense_Mutation p.V145A 0.32 deleterious(0) possibly_damaging(0.529) TCGA-2W-A8YY-01 21 45795733 45795733 G T TRPM2 Missense_Mutation p.E263D 0.44 deleterious(0.05) possibly_damaging(0.665) TCGA-2W-A8YY-01 21 45795734 45795734 T C TRPM2 Missense_Mutation p.Y264H 0.29 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 21 45843570 45843570 G A TRPM2 Silent p.K1168K 0.40 TCGA-2W-A8YY-01 21 45858962 45858962 C A TRPM2 Missense_Mutation p.P1394T 0.55 deleterious(0.01) benign(0.128) TCGA-2W-A8YY-01 21 45860707 45860707 G T TRPM2 Silent p.T1435T 0.62 TCGA-2W-A8YY-01 21 45861630 45861630 G A TRPM2 Missense_Mutation p.R1481H 0.39 tolerated(0.13) possibly_damaging(0.781) TCGA-2W-A8YY-01 21 45861848 45861848 G A TRPM2 3'UTR 0.50 TCGA-2W-A8YY-01 21 45919798 45919798 G A TSPEAR Silent p.F626F 0.33 TCGA-2W-A8YY-01 21 45928762 45928762 G A TSPEAR Intron 0.34 TCGA-2W-A8YY-01 21 45953585 45953585 G A TSPEAR Silent p.C175C 0.08 TCGA-2W-A8YY-01 21 45970420 45970420 G T KRTAP10-2 3'UTR 0.09 TCGA-2W-A8YY-01 21 45999757 45999757 G T KRTAP10-5 Nonsense_Mutation p.C233* 0.32 TCGA-2W-A8YY-01 21 46000395 46000395 C T KRTAP10-5 Missense_Mutation p.D21N 0.37 tolerated(0.19) unknown(0) TCGA-2W-A8YY-01 21 46011860 46011860 G A KRTAP10-6 Missense_Mutation p.S169F 0.19 deleterious(0.04) unknown(0) TCGA-2W-A8YY-01 21 46066843 46066843 C A KRTAP10-11 Nonsense_Mutation p.C156* 0.08 TCGA-2W-A8YY-01 21 46101785 46101785 C T KRTAP12-1 Missense_Mutation p.C85Y 0.30 tolerated(0.09) benign(0.384) TCGA-2W-A8YY-01 21 46228997 46228997 C T SUMO3 Missense_Mutation p.G63R 0.27 tolerated(0.05) probably_damaging(0.919) TCGA-2W-A8YY-01 21 46271423 46271423 T C PTTG1IP 3'UTR 0.34 TCGA-2W-A8YY-01 21 46309265 46309265 G A ITGB2 Silent p.C601C 0.39 TCGA-2W-A8YY-01 21 46311734 46311734 C T ITGB2 Missense_Mutation p.G468S 0.42 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 21 46492140 46492140 G A ADARB1 5'Flank 0.39 TCGA-2W-A8YY-01 21 46554733 46554733 C T ADARB1 Intron 0.46 TCGA-2W-A8YY-01 21 46624478 46624478 T C ADARB1 Missense_Mutation p.V565A 0.52 deleterious(0.02) possibly_damaging(0.78) TCGA-2W-A8YY-01 21 46624585 46624585 T C ADARB1 Missense_Mutation p.Y601H 0.26 tolerated(0.5) benign(0.198) TCGA-2W-A8YY-01 21 46875748 46875748 G A COL18A1 Missense_Mutation p.A102T 0.39 unknown(0) TCGA-2W-A8YY-01 21 46876435 46876435 G A COL18A1 Intron 0.37 TCGA-2W-A8YY-01 21 46907425 46907425 T C COL18A1 Splice_Site p.X812_splice 0.40 TCGA-2W-A8YY-01 21 46918157 46918157 C T COL18A1 Intron 0.29 TCGA-2W-A8YY-01 21 46929269 46929269 G A COL18A1 Splice_Site p.X1264_splice 0.20 TCGA-2W-A8YY-01 21 46929284 46929284 C T COL18A1 Silent p.A1268A 0.21 TCGA-2W-A8YY-01 21 46935596 46935596 G A SLC19A1 Silent p.D584D 0.44 TCGA-2W-A8YY-01 21 46951391 46951391 G A SLC19A1 Silent p.Y287Y 0.36 TCGA-2W-A8YY-01 21 46952042 46952042 C T SLC19A1 Silent p.P70P 0.11 TCGA-2W-A8YY-01 21 47410294 47410294 A G COL6A1 Silent p.G320G 0.09 TCGA-2W-A8YY-01 21 47423838 47423838 G A COL6A1 Missense_Mutation p.E1000K 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-2W-A8YY-01 21 47532419 47532419 C T COL6A2 Silent p.N214N 0.27 TCGA-2W-A8YY-01 21 47537844 47537844 C T COL6A2 Silent p.G370G 0.43 TCGA-2W-A8YY-01 21 47539743 47539743 C T COL6A2 Silent p.S437S 0.40 TCGA-2W-A8YY-01 21 47546079 47546079 C T COL6A2 Missense_Mutation p.R784C 0.33 tolerated(0.1) probably_damaging(0.93) TCGA-2W-A8YY-01 21 47549011 47549011 C T COL6A2 Intron 0.34 TCGA-2W-A8YY-01 21 47570097 47570097 G A FTCD Missense_Mutation p.A281V 0.08 tolerated(0.11) benign(0.269) TCGA-2W-A8YY-01 21 47614548 47614548 G T LSS Silent p.A615A 0.31 TCGA-2W-A8YY-01 21 47615645 47615645 C T LSS Missense_Mutation p.G588S 0.21 deleterious(0.01) possibly_damaging(0.878) TCGA-2W-A8YY-01 21 47616133 47616133 G A LSS Silent p.A573A 0.27 TCGA-2W-A8YY-01 21 47663426 47663426 T C MCM3AP Missense_Mutation p.N1750S 0.29 deleterious(0.01) benign(0.251) TCGA-2W-A8YY-01 21 47671522 47671522 C T MCM3AP Missense_Mutation p.G1404D 0.40 tolerated(0.41) benign(0.008) TCGA-2W-A8YY-01 21 47686043 47686043 C A MCM3AP Nonsense_Mutation p.E943* 0.48 TCGA-2W-A8YY-01 21 47690345 47690345 G A MCM3AP Silent p.N866N 0.38 TCGA-2W-A8YY-01 21 47704539 47704539 G A MCM3AP Missense_Mutation p.A221V 0.33 tolerated(0.2) benign(0.004) TCGA-2W-A8YY-01 21 47721905 47721905 A G C21orf58 3'UTR 0.29 TCGA-2W-A8YY-01 21 47737941 47737941 C T C21orf58 Silent p.L98L 0.43 TCGA-2W-A8YY-01 21 47786755 47786755 G A PCNT Missense_Mutation p.D956N 0.45 possibly_damaging(0.821) TCGA-2W-A8YY-01 21 47786985 47786985 C T PCNT Silent p.D1032D 0.33 TCGA-2W-A8YY-01 21 47805793 47805793 G A PCNT Missense_Mutation p.R1120H 0.46 possibly_damaging(0.84) TCGA-2W-A8YY-01 21 47811146 47811146 C T PCNT Silent p.S1357S 0.37 TCGA-2W-A8YY-01 21 47818035 47818035 C T PCNT Silent p.R1518R 0.39 TCGA-2W-A8YY-01 21 47832880 47832880 C T PCNT Missense_Mutation p.R2042C 0.44 benign(0) TCGA-2W-A8YY-01 21 47836695 47836695 C T PCNT Missense_Mutation p.A2288V 0.42 possibly_damaging(0.739) TCGA-2W-A8YY-01 21 47841944 47841944 C T PCNT Missense_Mutation p.T2362I 0.26 benign(0.018) TCGA-2W-A8YY-01 21 47851998 47851998 G T PCNT Nonsense_Mutation p.E2874* 0.19 TCGA-2W-A8YY-01 21 47952092 47952092 A G DIP2A Missense_Mutation p.Y416C 0.23 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 21 47971754 47971754 C T DIP2A Silent p.D989D 0.39 TCGA-2W-A8YY-01 21 47974571 47974571 C A DIP2A Missense_Mutation p.L1080I 0.26 tolerated(0.53) probably_damaging(0.973) TCGA-2W-A8YY-01 21 47983779 47983779 C T DIP2A Silent p.P1366P 0.41 TCGA-2W-A8YY-01 21 47987480 47987480 G A DIP2A Missense_Mutation p.R1554Q 0.54 deleterious(0) possibly_damaging(0.885) TCGA-2W-A8YY-01 21 9907242 9907242 G A TEKT4P2 RNA 0.17 TCGA-2W-A8YY-01 22 16278236 16278236 A C POTEH Intron 0.31 TCGA-2W-A8YY-01 22 17472966 17472966 C T GAB4 Missense_Mutation p.R92H 0.31 deleterious(0) benign(0.317) TCGA-2W-A8YY-01 22 17586804 17586804 C T IL17RA Silent p.S335S 0.45 TCGA-2W-A8YY-01 22 17590581 17590581 G A IL17RA Silent p.P824P 0.43 TCGA-2W-A8YY-01 22 17599566 17599566 C T CECR6 3'UTR 0.39 TCGA-2W-A8YY-01 22 17619185 17619185 G A CECR5 Missense_Mutation p.T333M 0.28 tolerated(0.13) benign(0.048) TCGA-2W-A8YY-01 22 17619188 17619188 G A CECR5 Missense_Mutation p.A332V 0.41 tolerated(0.2) benign(0.005) TCGA-2W-A8YY-01 22 17619468 17619468 C T CECR5 Missense_Mutation p.A303T 0.26 tolerated(0.48) benign(0.031) TCGA-2W-A8YY-01 22 17625982 17625982 C T CECR5 Missense_Mutation p.V157M 0.24 tolerated(0.14) benign(0.043) TCGA-2W-A8YY-01 22 17669266 17669266 G A CECR1 Silent p.G348G 0.16 TCGA-2W-A8YY-01 22 18022300 18022300 G T CECR2 Missense_Mutation p.W802L 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 22 18029019 18029019 C T CECR2 Missense_Mutation p.P1327S 0.41 tolerated(0.11) benign(0.04) TCGA-2W-A8YY-01 22 18070863 18070863 G A SLC25A18 Intron 0.42 TCGA-2W-A8YY-01 22 18178907 18178907 G A BCL2L13 Silent p.Q129Q 0.38 TCGA-2W-A8YY-01 22 18189589 18189589 G A BCL2L13 Intron 0.38 TCGA-2W-A8YY-01 22 18376667 18376667 G A MICAL3 Missense_Mutation p.R485C 0.64 possibly_damaging(0.88) TCGA-2W-A8YY-01 22 18379655 18379655 G A MICAL3 Silent p.T347T 0.44 TCGA-2W-A8YY-01 22 18387589 18387589 G A MICAL3 Missense_Mutation p.A94V 0.55 probably_damaging(0.999) TCGA-2W-A8YY-01 22 18570828 18570828 G A PEX26 Missense_Mutation p.R302H 0.21 deleterious(0.02) possibly_damaging(0.759) TCGA-2W-A8YY-01 22 18607057 18607057 C T TUBA8 Missense_Mutation p.R121C 0.23 deleterious_low_confidence(0.01) benign(0.388) TCGA-2W-A8YY-01 22 18640404 18640404 G A USP18 5'UTR 0.23 TCGA-2W-A8YY-01 22 18978424 18978424 C T DGCR5 RNA 0.30 TCGA-2W-A8YY-01 22 18979457 18979457 C T DGCR5 RNA 0.29 TCGA-2W-A8YY-01 22 19028734 19028734 C T DGCR2 Silent p.T411T 0.10 TCGA-2W-A8YY-01 22 19163123 19163123 G A SLC25A1 3'UTR 0.28 TCGA-2W-A8YY-01 22 19163606 19163606 C T SLC25A1 3'UTR 0.37 TCGA-2W-A8YY-01 22 19171054 19171054 T C CLTCL1 Missense_Mutation p.E1559G 0.60 deleterious(0.04) benign(0.005) TCGA-2W-A8YY-01 22 19208946 19208946 G A CLTCL1 Missense_Mutation p.A917V 0.43 deleterious(0.02) probably_damaging(0.921) TCGA-2W-A8YY-01 22 19373212 19373212 G A HIRA Silent p.T387T 0.33 TCGA-2W-A8YY-01 22 19420809 19420809 G A MRPL40 Silent p.T25T 0.41 TCGA-2W-A8YY-01 22 19709357 19709357 C T SEPT5 Missense_Mutation p.A276V 0.29 tolerated(0.12) benign(0.028) TCGA-2W-A8YY-01 22 19709395 19709395 C T SEPT5 Missense_Mutation p.R289C 0.47 deleterious(0.03) benign(0.081) TCGA-2W-A8YY-01 22 19776050 19776050 C T GNB1L 3'UTR 0.38 TCGA-2W-A8YY-01 22 19776326 19776326 G A GNB1L Missense_Mutation p.A297V 0.49 tolerated(0.15) benign(0.008) TCGA-2W-A8YY-01 22 19898940 19898940 T C TXNRD2 Missense_Mutation p.S208G 0.28 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 22 19902740 19902740 C T TXNRD2 Silent p.T196T 0.24 TCGA-2W-A8YY-01 22 19960701 19960701 G A ARVCF Silent p.N793N 0.13 TCGA-2W-A8YY-01 22 19969540 19969540 C T ARVCF Silent p.T95T 0.36 TCGA-2W-A8YY-01 22 19978253 19978253 C T ARVCF Missense_Mutation p.R22H 0.30 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 22 20073892 20073892 C A DGCR8 Missense_Mutation p.L136M 0.32 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 22 20079412 20079412 G A DGCR8 Missense_Mutation p.G509R 0.41 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 22 20100004 20100004 A G TRMT2A 3'UTR 0.45 TCGA-2W-A8YY-01 22 20100014 20100014 G T TRMT2A 3'UTR 0.29 TCGA-2W-A8YY-01 22 20100486 20100486 G A TRMT2A Missense_Mutation p.R532W 0.34 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 22 20128846 20128846 G A ZDHHC8 Missense_Mutation p.R334H 0.40 tolerated(0.14) probably_damaging(0.998) TCGA-2W-A8YY-01 22 20130444 20130444 C T ZDHHC8 Missense_Mutation p.R431C 0.31 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 22 20133789 20133789 G A ZDHHC8 Intron 0.22 TCGA-2W-A8YY-01 22 20230562 20230562 C T RTN4R Missense_Mutation p.V32I 0.29 tolerated(0.17) benign(0.077) TCGA-2W-A8YY-01 22 20302880 20302880 G T DGCR6L Missense_Mutation p.F164L 0.38 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 22 20383888 20383888 T C AC023490.1 3'Flank 0.14 TCGA-2W-A8YY-01 22 20385112 20385112 C T AC023490.1 3'Flank 0.41 TCGA-2W-A8YY-01 22 20390299 20390299 G A PI4KAP1 RNA 0.39 TCGA-2W-A8YY-01 22 20457729 20457729 C T RIMBP3 Nonsense_Mutation p.W1191* 0.17 TCGA-2W-A8YY-01 22 20458031 20458031 C T RIMBP3 Missense_Mutation p.D1091N 0.19 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 20458088 20458088 T C RIMBP3 Missense_Mutation p.M1072V 0.13 tolerated(0.26) benign(0.02) TCGA-2W-A8YY-01 22 20640867 20640867 G A AC011718.2 Intron 0.17 TCGA-2W-A8YY-01 22 20640965 20640965 C T AC011718.2 Intron 0.14 TCGA-2W-A8YY-01 22 20760053 20760053 G A ZNF74 Missense_Mutation p.G244R 0.27 tolerated(0.09) benign(0.008) TCGA-2W-A8YY-01 22 20760727 20760727 C T ZNF74 Silent p.G468G 0.44 TCGA-2W-A8YY-01 22 20783929 20783929 G A SCARF2 Missense_Mutation p.R440C 0.16 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 22 20800739 20800739 G A KLHL22 Silent p.D510D 0.36 TCGA-2W-A8YY-01 22 20812193 20812193 C T KLHL22 Missense_Mutation p.A403T 0.44 deleterious(0) probably_damaging(0.95) TCGA-2W-A8YY-01 22 20843412 20843412 G A KLHL22 Silent p.S29S 0.44 TCGA-2W-A8YY-01 22 20862602 20862602 G T MED15 Intron 0.27 TCGA-2W-A8YY-01 22 20920781 20920781 C T MED15 Nonsense_Mutation p.R240* 0.31 TCGA-2W-A8YY-01 22 20940884 20940884 C T MED15 Missense_Mutation p.R754C 0.09 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 22 21055639 21055639 C T TMEM191A RNA 0.27 TCGA-2W-A8YY-01 22 21062374 21062374 G A PI4KA Silent p.Y2090Y 0.27 TCGA-2W-A8YY-01 22 21082089 21082089 G T PI4KA Silent p.A1582A 0.28 TCGA-2W-A8YY-01 22 21083654 21083654 G A PI4KA Silent p.N1543N 0.27 TCGA-2W-A8YY-01 22 21088411 21088411 C T PI4KA Silent p.L1324L 0.33 TCGA-2W-A8YY-01 22 21333993 21333993 T C AIFM3 Splice_Site p.X551_splice 0.25 TCGA-2W-A8YY-01 22 21346571 21346571 G A LZTR1 Silent p.E354E 0.38 TCGA-2W-A8YY-01 22 21348262 21348262 G A LZTR1 Missense_Mutation p.R468H 0.34 deleterious(0.03) benign(0.408) TCGA-2W-A8YY-01 22 21350352 21350352 C A LZTR1 Missense_Mutation p.L724M 0.20 tolerated(0.08) probably_damaging(0.968) TCGA-2W-A8YY-01 22 21354312 21354312 G A THAP7 Missense_Mutation p.R263W 0.25 deleterious(0) probably_damaging(0.958) TCGA-2W-A8YY-01 22 21354949 21354949 G A THAP7 Nonsense_Mutation p.R122* 0.45 TCGA-2W-A8YY-01 22 21355014 21355014 C T THAP7 Missense_Mutation p.R100H 0.28 tolerated(0.14) benign(0) TCGA-2W-A8YY-01 22 21362974 21362974 G A AC002472.1 5'Flank 0.57 TCGA-2W-A8YY-01 22 21384235 21384235 C A SLC7A4 Missense_Mutation p.R463M 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-2W-A8YY-01 22 21384544 21384544 A G SLC7A4 Missense_Mutation p.V360A 0.38 deleterious(0) possibly_damaging(0.685) TCGA-2W-A8YY-01 22 21402367 21402367 C A AC002472.13 Intron 0.38 TCGA-2W-A8YY-01 22 21803222 21803222 G A HIC2 3'UTR 0.36 TCGA-2W-A8YY-01 22 21803237 21803237 A G HIC2 3'UTR 0.46 TCGA-2W-A8YY-01 22 21821856 21821856 C T TMEM191C RNA 0.33 TCGA-2W-A8YY-01 22 21982854 21982854 G A YDJC Silent p.R275R 0.38 TCGA-2W-A8YY-01 22 21989483 21989483 G T CCDC116 Missense_Mutation p.Q377H 0.39 tolerated(0.92) benign(0.002) TCGA-2W-A8YY-01 22 22007303 22007303 G A MIR301B RNA 0.48 TCGA-2W-A8YY-01 22 22117416 22117416 T C MAPK1 3'UTR 0.41 TCGA-2W-A8YY-01 22 22276826 22276826 A G PPM1F 3'UTR 0.60 TCGA-2W-A8YY-01 22 22288545 22288545 C T PPM1F Missense_Mutation p.A137T 0.40 deleterious(0.02) benign(0.012) TCGA-2W-A8YY-01 22 22319708 22319708 G A TOP3B Missense_Mutation p.P298S 0.43 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 22 22323083 22323083 G A TOP3B Missense_Mutation p.P216S 0.30 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 22 22348762 22348762 A T PRAMENP RNA 0.48 TCGA-2W-A8YY-01 22 22764476 22764476 G A IGLV1-40 Missense_Mutation p.S73N 0.44 tolerated_low_confidence(0.8) benign(0.007) TCGA-2W-A8YY-01 22 22890777 22890777 G A PRAME Silent p.Y414Y 0.36 TCGA-2W-A8YY-01 22 22893411 22893411 G A PRAME Missense_Mutation p.A41V 0.35 tolerated(0.06) possibly_damaging(0.713) TCGA-2W-A8YY-01 22 22901811 22901811 C T LL22NC03-63E9.3 Missense_Mutation p.P13S 0.09 possibly_damaging(0.81) TCGA-2W-A8YY-01 22 22981767 22981767 C T POM121L1P RNA 0.27 TCGA-2W-A8YY-01 22 23237936 23237936 C A IGLL5 3'UTR 0.44 TCGA-2W-A8YY-01 22 23487580 23487580 C T RAB36 Missense_Mutation p.L10F 0.36 tolerated_low_confidence(0.13) possibly_damaging(0.587) TCGA-2W-A8YY-01 22 23524084 23524084 C T BCR Missense_Mutation p.R313C 0.08 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-2W-A8YY-01 22 23603582 23603582 C T BCR Missense_Mutation p.P536L 0.51 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 22 23656831 23656831 G A BCR Missense_Mutation p.S1219N 0.43 deleterious(0.03) possibly_damaging(0.517) TCGA-2W-A8YY-01 22 23742007 23742007 C T ZDHHC8P1 RNA 0.51 TCGA-2W-A8YY-01 22 23742415 23742415 G A ZDHHC8P1 RNA 0.60 TCGA-2W-A8YY-01 22 23742473 23742473 C T ZDHHC8P1 RNA 0.45 TCGA-2W-A8YY-01 22 23811641 23811641 G A AP000345.1 RNA 0.27 TCGA-2W-A8YY-01 22 23917189 23917189 T A IGLL1 Missense_Mutation p.H96L 0.31 tolerated_low_confidence(0.49) benign(0) TCGA-2W-A8YY-01 22 24036624 24036624 G A RGL4 Missense_Mutation p.A335T 0.28 tolerated(0.14) benign(0.262) TCGA-2W-A8YY-01 22 24108371 24108371 T C CHCHD10 Missense_Mutation p.D118G 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 24123522 24123522 G A MMP11 Missense_Mutation p.R334H 0.33 tolerated(0.09) benign(0.243) TCGA-2W-A8YY-01 22 24135823 24135823 G A SMARCB1 Missense_Mutation p.D104N 0.41 deleterious(0.01) possibly_damaging(0.83) TCGA-2W-A8YY-01 22 24167542 24167542 C T SMARCB1 Missense_Mutation p.T309I 0.43 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 22 24179979 24179979 G T DERL3 Nonsense_Mutation p.Y130* 0.08 TCGA-2W-A8YY-01 22 24180771 24180771 G A DERL3 Silent p.F71F 0.34 TCGA-2W-A8YY-01 22 24226054 24226054 C T SLC2A11 Silent p.C367C 0.42 TCGA-2W-A8YY-01 22 24238026 24238026 C A AP000350.4 Missense_Mutation p.W25C 0.39 unknown(0) TCGA-2W-A8YY-01 22 24434804 24434804 G A CABIN1 Silent p.E35E 0.38 TCGA-2W-A8YY-01 22 24463082 24463082 G A CABIN1 Missense_Mutation p.E728K 0.11 deleterious(0.01) possibly_damaging(0.831) TCGA-2W-A8YY-01 22 24479228 24479228 G A CABIN1 Silent p.T932T 0.67 TCGA-2W-A8YY-01 22 24479250 24479250 G A CABIN1 Missense_Mutation p.E940K 0.59 tolerated(0.09) probably_damaging(0.991) TCGA-2W-A8YY-01 22 24567720 24567720 G T CABIN1 Missense_Mutation p.D1933Y 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 22 24583764 24583764 G A SUSD2 Missense_Mutation p.R706Q 0.44 tolerated(0.09) benign(0.1) TCGA-2W-A8YY-01 22 24584257 24584257 G A SUSD2 Silent p.A802A 0.33 TCGA-2W-A8YY-01 22 24584385 24584385 T C SUSD2 Missense_Mutation p.V817A 0.23 tolerated(0.61) benign(0.007) TCGA-2W-A8YY-01 22 24584422 24584422 T C SUSD2 3'UTR 0.41 TCGA-2W-A8YY-01 22 24640599 24640599 T C GGT5 Missense_Mutation p.H32R 0.27 tolerated(0.96) benign(0.002) TCGA-2W-A8YY-01 22 24648633 24648633 C T POM121L9P RNA 0.29 TCGA-2W-A8YY-01 22 24658409 24658409 C T POM121L9P RNA 0.49 TCGA-2W-A8YY-01 22 24810521 24810521 G T SPECC1L Missense_Mutation p.R1095L 0.26 tolerated(0.47) benign(0.026) TCGA-2W-A8YY-01 22 24909348 24909348 G A UPB1 Silent p.E172E 0.12 TCGA-2W-A8YY-01 22 24938956 24938956 C T GUCD1 3'UTR 0.12 TCGA-2W-A8YY-01 22 24964031 24964031 G A SNRPD3 Missense_Mutation p.R69H 0.52 deleterious(0) probably_damaging(0.953) TCGA-2W-A8YY-01 22 24984204 24984204 G A FAM211B Missense_Mutation p.R134C 0.44 tolerated(0.12) benign(0) TCGA-2W-A8YY-01 22 25016486 25016486 T C GGT1 Missense_Mutation p.C192R 0.25 tolerated(0.5) benign(0.006) TCGA-2W-A8YY-01 22 25023248 25023248 C T GGT1 Intron 0.45 TCGA-2W-A8YY-01 22 25024837 25024837 T C GGT1 3'UTR 0.23 TCGA-2W-A8YY-01 22 25243602 25243602 G A SGSM1 Silent p.A47A 0.36 TCGA-2W-A8YY-01 22 25263060 25263060 C T SGSM1 Silent p.S309S 0.25 TCGA-2W-A8YY-01 22 25264350 25264350 C T SGSM1 Silent p.S334S 0.27 TCGA-2W-A8YY-01 22 25264381 25264381 G A SGSM1 Missense_Mutation p.G345R 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 25272562 25272562 A G SGSM1 Missense_Mutation p.D492G 0.44 tolerated(0.16) benign(0.15) TCGA-2W-A8YY-01 22 25570344 25570344 G T KIAA1671 Missense_Mutation p.S1596I 0.18 deleterious(0) benign(0.221) TCGA-2W-A8YY-01 22 26219542 26219542 G T MYO18B Missense_Mutation p.E864D 0.41 deleterious(0.04) probably_damaging(0.944) TCGA-2W-A8YY-01 22 26287272 26287272 G A MYO18B Missense_Mutation p.S1479N 0.48 tolerated(0.11) benign(0.041) TCGA-2W-A8YY-01 22 26287338 26287338 A C MYO18B Missense_Mutation p.K1501T 0.38 tolerated(0.11) probably_damaging(0.913) TCGA-2W-A8YY-01 22 26426439 26426439 G A MYO18B 3'UTR 0.12 TCGA-2W-A8YY-01 22 26861501 26861501 C T HPS4 Silent p.P241P 0.45 TCGA-2W-A8YY-01 22 26875444 26875444 C T HPS4 Intron 0.52 TCGA-2W-A8YY-01 22 26895154 26895154 G A TFIP11 Silent p.Y415Y 0.31 TCGA-2W-A8YY-01 22 26902834 26902834 C T TFIP11 Silent p.A90A 0.31 TCGA-2W-A8YY-01 22 26932346 26932346 C T TPST2 Missense_Mutation p.A317T 0.45 deleterious(0.02) benign(0.37) TCGA-2W-A8YY-01 22 26936942 26936942 C T TPST2 Missense_Mutation p.E219K 0.48 tolerated(0.14) benign(0.167) TCGA-2W-A8YY-01 22 26951188 26951188 C T TPST2 Intron 0.37 TCGA-2W-A8YY-01 22 26995607 26995607 G A CRYBB1 Silent p.R202R 0.43 TCGA-2W-A8YY-01 22 27012148 27012148 T C CRYBB1 Missense_Mutation p.I46V 0.36 tolerated(0.75) benign(0.001) TCGA-2W-A8YY-01 22 27026435 27026435 G A CRYBA4 Missense_Mutation p.R192H 0.34 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 22 28195650 28195650 C T MN1 Silent p.Q294Q 0.30 TCGA-2W-A8YY-01 22 28379779 28379779 G T TTC28 Missense_Mutation p.A1959D 0.26 deleterious(0.01) possibly_damaging(0.717) TCGA-2W-A8YY-01 22 28389487 28389487 C T TTC28 Missense_Mutation p.R1755H 0.54 deleterious(0.05) probably_damaging(0.999) TCGA-2W-A8YY-01 22 28503098 28503098 C T TTC28 Missense_Mutation p.R912H 0.21 tolerated(0.28) benign(0.008) TCGA-2W-A8YY-01 22 28504083 28504083 C T TTC28 Missense_Mutation p.A584T 0.30 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 22 29182414 29182414 G A CCDC117 3'UTR 0.25 TCGA-2W-A8YY-01 22 29192142 29192142 G A XBP1 Silent p.S164S 0.23 TCGA-2W-A8YY-01 22 29439367 29439367 C T ZNRF3 Silent p.I194I 0.57 TCGA-2W-A8YY-01 22 29445297 29445297 C T ZNRF3 Silent p.N376N 0.33 TCGA-2W-A8YY-01 22 29456751 29456751 C A C22orf31 Missense_Mutation p.Q28H 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 22 29494904 29494904 T C KREMEN1 Silent p.G105G 0.24 TCGA-2W-A8YY-01 22 29533340 29533340 C T KREMEN1 Silent p.G214G 0.47 TCGA-2W-A8YY-01 22 29533411 29533411 C T KREMEN1 Missense_Mutation p.T238M 0.35 tolerated(0.07) possibly_damaging(0.888) TCGA-2W-A8YY-01 22 29654942 29654942 G A EMID1 3'UTR 0.49 TCGA-2W-A8YY-01 22 29704329 29704329 C T GAS2L1 Silent p.A78A 0.34 TCGA-2W-A8YY-01 22 29708404 29708404 G A GAS2L1 3'Flank 0.10 TCGA-2W-A8YY-01 22 29738301 29738301 C A AP1B1 Silent p.V503V 0.17 TCGA-2W-A8YY-01 22 29957840 29957840 G A NIPSNAP1 Nonsense_Mutation p.R127* 0.45 TCGA-2W-A8YY-01 22 30127267 30127267 G A ZMAT5 Missense_Mutation p.R154W 0.50 deleterious(0.05) benign(0.017) TCGA-2W-A8YY-01 22 30185067 30185067 T C ASCC2 Missense_Mutation p.R737G 0.55 tolerated(0.34) benign(0.05) TCGA-2W-A8YY-01 22 30416675 30416675 G A MTMR3 Silent p.Q1009Q 0.37 TCGA-2W-A8YY-01 22 30572217 30572217 A T HORMAD2 3'UTR 0.36 TCGA-2W-A8YY-01 22 30636502 30636502 T C LIF 3'UTR 0.44 TCGA-2W-A8YY-01 22 30681833 30681833 G A GATSL3 Silent p.F303F 0.39 TCGA-2W-A8YY-01 22 30688816 30688816 G A TBC1D10A Missense_Mutation p.R366C 0.31 deleterious(0) possibly_damaging(0.462) TCGA-2W-A8YY-01 22 30766561 30766561 G A CCDC157 Missense_Mutation p.A223T 0.54 tolerated(0.42) probably_damaging(0.996) TCGA-2W-A8YY-01 22 30780403 30780403 G A RNF215 Silent p.T223T 0.11 TCGA-2W-A8YY-01 22 30866034 30866034 T C SEC14L3 Missense_Mutation p.D69G 0.33 deleterious(0) possibly_damaging(0.636) TCGA-2W-A8YY-01 22 30977589 30977589 C T PES1 Missense_Mutation p.E225K 0.44 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 22 31289639 31289639 G T OSBP2 Missense_Mutation p.E703D 0.29 tolerated(0.47) benign(0.101) TCGA-2W-A8YY-01 22 31354670 31354670 C T MORC2 5'UTR 0.40 TCGA-2W-A8YY-01 22 31483981 31483981 C T SMTN Missense_Mutation p.R28W 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 22 31500398 31500398 G A SMTN Silent p.S923S 0.41 TCGA-2W-A8YY-01 22 31674512 31674512 G A LIMK2 3'Flank 0.33 TCGA-2W-A8YY-01 22 31685637 31685637 G A PIK3IP1 Missense_Mutation p.A119V 0.12 tolerated(0.27) benign(0.002) TCGA-2W-A8YY-01 22 31722430 31722430 T C PATZ1 3'UTR 0.57 TCGA-2W-A8YY-01 22 31740902 31740902 T C PATZ1 Silent p.L229L 0.24 TCGA-2W-A8YY-01 22 31884619 31884619 C T EIF4ENIF1 Missense_Mutation p.R29H 0.29 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 22 32009730 32009730 G A SFI1 Missense_Mutation p.R962H 0.29 tolerated(0.56) benign(0.001) TCGA-2W-A8YY-01 22 32011204 32011204 C T SFI1 Missense_Mutation p.P1080L 0.54 tolerated(0.26) benign(0.005) TCGA-2W-A8YY-01 22 32017074 32017074 A G PISD Missense_Mutation p.L217P 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 22 32108892 32108892 G A PRR14L Missense_Mutation p.L1645F 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 22 32109101 32109101 C T PRR14L Missense_Mutation p.R1575Q 0.39 tolerated(0.58) benign(0.002) TCGA-2W-A8YY-01 22 32111456 32111456 C T PRR14L Missense_Mutation p.R790H 0.51 deleterious(0.04) benign(0.047) TCGA-2W-A8YY-01 22 32150935 32150935 G A DEPDC5 Missense_Mutation p.V10I 0.35 tolerated(0.69) possibly_damaging(0.903) TCGA-2W-A8YY-01 22 32162584 32162584 A G DEPDC5 Missense_Mutation p.D98G 0.35 deleterious(0) benign(0.289) TCGA-2W-A8YY-01 22 32275576 32275576 C T DEPDC5 Missense_Mutation p.R1282C 0.11 deleterious(0) probably_damaging(0.915) TCGA-2W-A8YY-01 22 32302247 32302247 C T DEPDC5 Missense_Mutation p.R1517W 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 22 32353338 32353338 G A YWHAH 3'UTR 0.34 TCGA-2W-A8YY-01 22 32353365 32353365 G A YWHAH 3'UTR 0.33 TCGA-2W-A8YY-01 22 32480900 32480900 G A SLC5A1 Missense_Mutation p.R300H 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 32616967 32616967 G A SLC5A4 Nonsense_Mutation p.R570* 0.42 TCGA-2W-A8YY-01 22 32630927 32630927 T C SLC5A4 Missense_Mutation p.D273G 0.46 deleterious(0) possibly_damaging(0.734) TCGA-2W-A8YY-01 22 32756401 32756401 G A RFPL3 Missense_Mutation p.R179H 0.42 tolerated(0.09) benign(0.001) TCGA-2W-A8YY-01 22 32909638 32909638 G A SYN3 3'UTR 0.35 TCGA-2W-A8YY-01 22 32909698 32909698 G A SYN3 Missense_Mutation p.A575V 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 22 32909762 32909762 G A SYN3 Missense_Mutation p.R554C 0.30 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 22 32923954 32923954 G A SYN3 Silent p.A423A 0.34 TCGA-2W-A8YY-01 22 32934097 32934097 C A SYN3 Splice_Site p.X306_splice 0.44 TCGA-2W-A8YY-01 22 33670589 33670589 G A LARGE Missense_Mutation p.P699S 0.24 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 22 33960900 33960900 G T LARGE Missense_Mutation p.L241I 0.56 deleterious(0) possibly_damaging(0.772) TCGA-2W-A8YY-01 22 34046474 34046474 C T LARGE Missense_Mutation p.G96D 0.37 tolerated_low_confidence(0.24) benign(0.046) TCGA-2W-A8YY-01 22 35481474 35481474 C T ISX Missense_Mutation p.R176C 0.35 tolerated(0.12) benign(0.17) TCGA-2W-A8YY-01 22 35660742 35660742 G A HMGXB4 Missense_Mutation p.A121T 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.874) TCGA-2W-A8YY-01 22 35689792 35689792 C T HMGXB4 3'UTR 0.43 TCGA-2W-A8YY-01 22 35691406 35691406 C A HMGXB4 3'UTR 0.43 TCGA-2W-A8YY-01 22 35802594 35802594 G A MCM5 Missense_Mutation p.A158T 0.39 tolerated(0.06) possibly_damaging(0.505) TCGA-2W-A8YY-01 22 35802676 35802676 G A MCM5 Missense_Mutation p.R185H 0.33 tolerated(0.08) possibly_damaging(0.628) TCGA-2W-A8YY-01 22 35813773 35813773 G A MCM5 Missense_Mutation p.A543T 0.25 tolerated(0.08) possibly_damaging(0.595) TCGA-2W-A8YY-01 22 35820223 35820223 G A MCM5 Missense_Mutation p.R727H 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 22 35820238 35820238 G A MCM5 Missense_Mutation p.R732H 0.11 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 22 35947724 35947724 G A RASD2 Missense_Mutation p.R149H 0.29 tolerated(0.07) probably_damaging(0.994) TCGA-2W-A8YY-01 22 35948817 35948817 C A RASD2 3'UTR 0.31 TCGA-2W-A8YY-01 22 36023318 36023318 C T AL049747.1 3'UTR 0.32 TCGA-2W-A8YY-01 22 36055235 36055235 C T APOL6 Silent p.G208G 0.36 TCGA-2W-A8YY-01 22 36135079 36135079 C T RBFOX2 3'UTR 0.42 TCGA-2W-A8YY-01 22 36138550 36138550 A C RBFOX2 3'Flank 0.10 TCGA-2W-A8YY-01 22 36593749 36593749 G A APOL4 Intron 0.32 TCGA-2W-A8YY-01 22 36677857 36677857 C T MYH9 3'UTR 0.39 TCGA-2W-A8YY-01 22 36678069 36678069 G A MYH9 3'UTR 0.40 TCGA-2W-A8YY-01 22 36900575 36900575 C T FOXRED2 Missense_Mutation p.V256I 0.30 deleterious(0) possibly_damaging(0.762) TCGA-2W-A8YY-01 22 36907799 36907799 G A EIF3D Missense_Mutation p.R462C 0.29 deleterious(0) probably_damaging(0.93) TCGA-2W-A8YY-01 22 36914906 36914906 G T EIF3D Missense_Mutation p.L255M 0.17 deleterious(0.02) possibly_damaging(0.905) TCGA-2W-A8YY-01 22 36914916 36914916 G A EIF3D Silent p.I251I 0.20 TCGA-2W-A8YY-01 22 36914920 36914920 G A EIF3D Missense_Mutation p.A250V 0.29 tolerated(0.27) possibly_damaging(0.457) TCGA-2W-A8YY-01 22 36960265 36960266 - TT CACNG2 3'UTR 0.15 TCGA-2W-A8YY-01 22 37154436 37154436 G A IFT27 Silent p.F160F 0.31 TCGA-2W-A8YY-01 22 37160054 37160054 G A IFT27 Silent p.L87L 0.38 TCGA-2W-A8YY-01 22 37419806 37419806 A G MPST Intron 0.33 TCGA-2W-A8YY-01 22 37637190 37637190 C T RAC2 Intron 0.39 TCGA-2W-A8YY-01 22 37771508 37771508 C T ELFN2 Missense_Mutation p.D23N 0.45 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 22 37962367 37962367 C A CDC42EP1 Missense_Mutation p.P4H 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 22 37967872 37967872 C T LGALS2 Missense_Mutation p.A25T 0.35 tolerated(0.44) benign(0.01) TCGA-2W-A8YY-01 22 38038796 38038796 G T SH3BP1 Intron 0.35 TCGA-2W-A8YY-01 22 38039729 38039729 G A SH3BP1 Missense_Mutation p.M184I 0.24 tolerated(0.14) benign(0.002) TCGA-2W-A8YY-01 22 38119284 38119284 A G TRIOBP Missense_Mutation p.T241A 0.35 tolerated_low_confidence(0.07) benign(0.015) TCGA-2W-A8YY-01 22 38130950 38130950 C A TRIOBP Missense_Mutation p.A1536D 0.37 tolerated_low_confidence(0.08) possibly_damaging(0.518) TCGA-2W-A8YY-01 22 38131126 38131126 C T TRIOBP Missense_Mutation p.R1595C 0.36 tolerated_low_confidence(0.19) benign(0.001) TCGA-2W-A8YY-01 22 38153803 38153803 G A TRIOBP Silent p.Q1957Q 0.47 TCGA-2W-A8YY-01 22 38155463 38155463 C T TRIOBP Intron 0.20 TCGA-2W-A8YY-01 22 38274003 38274003 A G EIF3L Missense_Mutation p.Y467C 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 38321847 38321847 C T MICALL1 Missense_Mutation p.S421F 0.21 deleterious(0) benign(0.332) TCGA-2W-A8YY-01 22 38321951 38321951 A G MICALL1 Missense_Mutation p.T456A 0.45 tolerated(0.45) benign(0.059) TCGA-2W-A8YY-01 22 38323749 38323749 C T MICALL1 Silent p.G599G 0.45 TCGA-2W-A8YY-01 22 38363117 38363117 C A POLR2F Missense_Mutation p.P78H 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 38363207 38363207 C T POLR2F Intron 0.35 TCGA-2W-A8YY-01 22 38380503 38380503 G T SOX10 5'UTR 0.35 TCGA-2W-A8YY-01 22 38470347 38470347 G A PICK1 Missense_Mutation p.G290S 0.29 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 22 38470902 38470902 C T PICK1 Silent p.L337L 0.48 TCGA-2W-A8YY-01 22 38511569 38511569 C T PLA2G6 Missense_Mutation p.E667K 0.30 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 22 38611944 38611944 G A MAFF 3'UTR 0.43 TCGA-2W-A8YY-01 22 38616371 38616371 G A TMEM184B 3'UTR 0.34 TCGA-2W-A8YY-01 22 38882079 38882079 C T DDX17 Missense_Mutation p.R686Q 0.48 tolerated_low_confidence(0.21) possibly_damaging(0.785) TCGA-2W-A8YY-01 22 38890035 38890035 C T DDX17 Missense_Mutation p.R439H 0.37 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 22 38903642 38903642 G A DDX17 5'Flank 0.46 TCGA-2W-A8YY-01 22 38933596 38933596 C T DMC1 Splice_Site p.X279_splice 0.39 TCGA-2W-A8YY-01 22 38935337 38935337 C T DMC1 Missense_Mutation p.R192H 0.53 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 39041637 39041637 G A FAM227A Silent p.G46G 0.33 TCGA-2W-A8YY-01 22 39120351 39120351 G T GTPBP1 Missense_Mutation p.K336N 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 22 39122156 39122156 G A GTPBP1 Splice_Site p.X406_splice 0.37 TCGA-2W-A8YY-01 22 39125470 39125470 C A GTPBP1 Missense_Mutation p.L574I 0.15 tolerated(0.43) benign(0.021) TCGA-2W-A8YY-01 22 39132096 39132096 C T GTPBP1 3'Flank 0.41 TCGA-2W-A8YY-01 22 39145788 39145788 G A SUN2 Silent p.D220D 0.52 TCGA-2W-A8YY-01 22 39222685 39222685 G A NPTXR Silent p.Y306Y 0.47 TCGA-2W-A8YY-01 22 39411716 39411716 G A APOBEC3C Missense_Mutation p.R45H 0.37 tolerated(0.23) benign(0.002) TCGA-2W-A8YY-01 22 39440196 39440196 G A APOBEC3F Intron 0.41 TCGA-2W-A8YY-01 22 39528803 39528803 A - CBX7 3'UTR 0.14 TCGA-2W-A8YY-01 22 39627666 39627666 C T PDGFB Silent p.V139V 0.34 TCGA-2W-A8YY-01 22 39780773 39780773 G T SYNGR1 3'UTR 0.33 TCGA-2W-A8YY-01 22 39883984 39883984 C T MGAT3 Missense_Mutation p.A211V 0.38 deleterious(0) possibly_damaging(0.672) TCGA-2W-A8YY-01 22 39884389 39884389 A G MGAT3 Missense_Mutation p.K346R 0.38 tolerated(0.64) possibly_damaging(0.89) TCGA-2W-A8YY-01 22 39886575 39886575 C A MGAT3 3'UTR 0.38 TCGA-2W-A8YY-01 22 39886638 39886638 C A MGAT3 3'UTR 0.37 TCGA-2W-A8YY-01 22 39887213 39887213 G A MGAT3 3'UTR 0.34 TCGA-2W-A8YY-01 22 39900509 39900509 C A MIEF1 5'UTR 0.57 TCGA-2W-A8YY-01 22 39909985 39909985 G A MIEF1 Missense_Mutation p.R350Q 0.28 tolerated(0.25) benign(0.441) TCGA-2W-A8YY-01 22 39914009 39914009 T C MIEF1 3'UTR 0.46 TCGA-2W-A8YY-01 22 39996648 39996648 G A CACNA1I Missense_Mutation p.V158I 0.37 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 22 40045765 40045765 G A CACNA1I Silent p.E609E 0.45 TCGA-2W-A8YY-01 22 40060918 40060918 C T CACNA1I Missense_Mutation p.R1281C 0.30 deleterious(0) possibly_damaging(0.898) TCGA-2W-A8YY-01 22 40139822 40139822 T C ENTHD1 Silent p.L562L 0.09 TCGA-2W-A8YY-01 22 40391469 40391469 G A FAM83F Silent p.P141P 0.24 TCGA-2W-A8YY-01 22 40440917 40440917 C T FAM83F 3'Flank 0.29 TCGA-2W-A8YY-01 22 40658145 40658145 C T TNRC6B Missense_Mutation p.A142V 0.50 tolerated(0.23) benign(0.003) TCGA-2W-A8YY-01 22 40662200 40662200 G A TNRC6B Missense_Mutation p.A656T 0.41 tolerated(0.09) benign(0.102) TCGA-2W-A8YY-01 22 40711510 40711510 G A TNRC6B Silent p.S1634S 0.25 TCGA-2W-A8YY-01 22 40720510 40720510 T C TNRC6B 3'UTR 0.31 TCGA-2W-A8YY-01 22 40720866 40720866 C A TNRC6B 3'UTR 0.35 TCGA-2W-A8YY-01 22 40726545 40726545 C T TNRC6B 3'UTR 0.60 TCGA-2W-A8YY-01 22 40731088 40731088 C A TNRC6B 3'UTR 0.12 TCGA-2W-A8YY-01 22 40758987 40758987 G A ADSL Missense_Mutation p.R338Q 0.42 deleterious(0) probably_damaging(0.931) TCGA-2W-A8YY-01 22 40798193 40798193 C T SGSM3 Silent p.F47F 0.37 TCGA-2W-A8YY-01 22 40801830 40801830 C T SGSM3 Missense_Mutation p.L266F 0.09 deleterious(0.02) probably_damaging(0.98) TCGA-2W-A8YY-01 22 40802206 40802206 G A SGSM3 Silent p.T313T 0.33 TCGA-2W-A8YY-01 22 40816467 40816467 T C MKL1 Missense_Mutation p.N332S 0.29 tolerated(0.13) benign(0.365) TCGA-2W-A8YY-01 22 40820326 40820326 C T MKL1 Missense_Mutation p.D121N 0.35 deleterious(0) probably_damaging(0.981) TCGA-2W-A8YY-01 22 41282442 41282442 C T XPNPEP3 Silent p.L239L 0.09 TCGA-2W-A8YY-01 22 41322434 41322434 T C XPNPEP3 Missense_Mutation p.S507P 0.27 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-2W-A8YY-01 22 41360075 41360075 C T RBX1 Missense_Mutation p.A61V 0.39 tolerated(0.14) probably_damaging(0.923) TCGA-2W-A8YY-01 22 41368565 41368565 C T RBX1 3'UTR 0.42 TCGA-2W-A8YY-01 22 41513698 41513698 G A EP300 Missense_Mutation p.G201E 0.40 unknown(0) TCGA-2W-A8YY-01 22 41573046 41573046 C T EP300 Silent p.G1777G 0.38 TCGA-2W-A8YY-01 22 41574637 41574637 C T EP300 Missense_Mutation p.R2308C 0.42 probably_damaging(0.973) TCGA-2W-A8YY-01 22 41754969 41754969 G A ZC3H7B 3'UTR 0.47 TCGA-2W-A8YY-01 22 41830096 41830096 A - TOB2 3'UTR 0.30 TCGA-2W-A8YY-01 22 41832215 41832215 G A TOB2 3'UTR 0.47 TCGA-2W-A8YY-01 22 41918930 41918930 C T ACO2 Missense_Mutation p.S412F 0.41 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-2W-A8YY-01 22 41920901 41920901 G A ACO2 Missense_Mutation p.D512N 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-2W-A8YY-01 22 42177846 42177846 G C MEI1 Missense_Mutation p.L1028F 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-2W-A8YY-01 22 42273264 42273264 C T SREBF2 Missense_Mutation p.A473V 0.26 deleterious(0.02) benign(0.374) TCGA-2W-A8YY-01 22 42276893 42276893 G A SREBF2 Silent p.R645R 0.37 TCGA-2W-A8YY-01 22 42301504 42301504 G A SREBF2 Missense_Mutation p.R1089H 0.37 tolerated(0.14) probably_damaging(0.997) TCGA-2W-A8YY-01 22 42334852 42334852 G T CENPM 3'UTR 0.67 TCGA-2W-A8YY-01 22 42456378 42456378 G A NAGA Nonsense_Mutation p.R381* 0.37 TCGA-2W-A8YY-01 22 42459025 42459025 G T NAGA Missense_Mutation p.L255I 0.40 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 22 42461863 42461863 C T NAGA Missense_Mutation p.R213H 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 42522916 42522916 C T CYP2D6 Missense_Mutation p.E418K 0.34 tolerated(0.06) benign(0.399) TCGA-2W-A8YY-01 22 42525905 42525905 G A CYP2D6 Missense_Mutation p.R63C 0.25 tolerated(0.13) benign(0.017) TCGA-2W-A8YY-01 22 42540558 42540558 C T RP4-669P10.16 5'Flank 0.17 TCGA-2W-A8YY-01 22 42556695 42556695 T A TCF20 3'UTR 0.32 TCGA-2W-A8YY-01 22 42557283 42557283 G A TCF20 3'UTR 0.34 TCGA-2W-A8YY-01 22 42564618 42564618 T C TCF20 3'UTR 0.50 TCGA-2W-A8YY-01 22 42606525 42606525 C T TCF20 Missense_Mutation p.R1596Q 0.33 probably_damaging(0.937) TCGA-2W-A8YY-01 22 42780405 42780405 C T NFAM1 3'UTR 0.49 TCGA-2W-A8YY-01 22 42805455 42805455 G A NFAM1 Silent p.L184L 0.44 TCGA-2W-A8YY-01 22 42905075 42905075 G A RRP7A 3'Flank 0.18 TCGA-2W-A8YY-01 22 42908986 42908986 C T RRP7A Missense_Mutation p.R258H 0.39 deleterious(0.01) possibly_damaging(0.827) TCGA-2W-A8YY-01 22 42967168 42967168 G A SERHL2 Silent p.A230A 0.10 TCGA-2W-A8YY-01 22 43089513 43089513 G A A4GALT Silent p.L149L 0.10 TCGA-2W-A8YY-01 22 43464433 43464433 C A TTLL1 Silent p.R162R 0.36 TCGA-2W-A8YY-01 22 43529055 43529056 - A MCAT Frame_Shift_Ins p.R390Efs*61 0.30 TCGA-2W-A8YY-01 22 43570576 43570576 C T TTLL12 Silent p.P321P 0.19 TCGA-2W-A8YY-01 22 43616481 43616481 G A SCUBE1 Silent p.I554I 0.39 TCGA-2W-A8YY-01 22 43901403 43901403 G A MPPED1 Silent p.T296T 0.14 TCGA-2W-A8YY-01 22 43901487 43901487 G T MPPED1 Silent p.R324R 0.38 TCGA-2W-A8YY-01 22 43936093 43936093 G A EFCAB6 Missense_Mutation p.P1265S 0.36 tolerated(0.05) possibly_damaging(0.654) TCGA-2W-A8YY-01 22 44229553 44229553 G A SULT4A1 Silent p.N190N 0.21 TCGA-2W-A8YY-01 22 44285238 44285238 G T PNPLA5 Missense_Mutation p.L225I 0.26 tolerated(0.41) benign(0.001) TCGA-2W-A8YY-01 22 44286957 44286957 G A PNPLA5 Silent p.C137C 0.27 TCGA-2W-A8YY-01 22 44360366 44360366 G A SAMM50 Missense_Mutation p.G56E 0.30 tolerated(1) benign(0.009) TCGA-2W-A8YY-01 22 44528849 44528849 G A PARVB Missense_Mutation p.R231H 0.35 tolerated(0.08) benign(0.157) TCGA-2W-A8YY-01 22 44585032 44585032 G A PARVG Missense_Mutation p.A96T 0.37 tolerated(0.4) possibly_damaging(0.879) TCGA-2W-A8YY-01 22 44602295 44602295 G A PARVG Missense_Mutation p.A329T 0.12 tolerated_low_confidence(0.65) benign(0) TCGA-2W-A8YY-01 22 45277049 45277049 T C PHF21B 3'UTR 0.34 TCGA-2W-A8YY-01 22 45277527 45277527 G A PHF21B 3'UTR 0.26 TCGA-2W-A8YY-01 22 45312312 45312312 C T PHF21B Missense_Mutation p.A138T 0.36 tolerated(0.11) benign(0.011) TCGA-2W-A8YY-01 22 45574382 45574382 G A NUP50 Missense_Mutation p.G202R 0.26 deleterious(0.04) possibly_damaging(0.497) TCGA-2W-A8YY-01 22 45581072 45581072 C T NUP50 3'UTR 0.36 TCGA-2W-A8YY-01 22 45596899 45596899 C T KIAA0930 Intron 0.28 TCGA-2W-A8YY-01 22 45607873 45607873 C T KIAA0930 Silent p.A65A 0.50 TCGA-2W-A8YY-01 22 45826804 45826804 C T RIBC2 Nonsense_Mutation p.R305* 0.11 TCGA-2W-A8YY-01 22 45927158 45927158 G A FBLN1 Silent p.E166E 0.39 TCGA-2W-A8YY-01 22 45937213 45937213 C T FBLN1 Missense_Mutation p.R343C 0.44 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 22 45939340 45939340 C A FBLN1 Missense_Mutation p.L419M 0.08 tolerated(0.27) benign(0.087) TCGA-2W-A8YY-01 22 45944563 45944563 C A FBLN1 Missense_Mutation p.S504R 0.40 deleterious(0) probably_damaging(0.944) TCGA-2W-A8YY-01 22 46067805 46067805 C T ATXN10 5'UTR 0.38 TCGA-2W-A8YY-01 22 46319084 46319084 C T WNT7B Silent p.A234A 0.35 TCGA-2W-A8YY-01 22 46654659 46654659 G A PKDREJ Missense_Mutation p.H1521Y 0.42 tolerated(0.07) benign(0.308) TCGA-2W-A8YY-01 22 46656371 46656371 G A PKDREJ Missense_Mutation p.A950V 0.19 tolerated(0.83) benign(0.012) TCGA-2W-A8YY-01 22 46657006 46657006 G A PKDREJ Silent p.I738I 0.49 TCGA-2W-A8YY-01 22 46685788 46685788 C T TTC38 Silent p.N436N 0.32 TCGA-2W-A8YY-01 22 46758454 46758454 G A CELSR1 3'UTR 0.18 TCGA-2W-A8YY-01 22 46773080 46773080 C T CELSR1 Missense_Mutation p.V2488I 0.35 tolerated(0.62) benign(0.014) TCGA-2W-A8YY-01 22 46777753 46777753 G A CELSR1 Missense_Mutation p.R2360C 0.49 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 22 46782348 46782348 G A CELSR1 Silent p.N2230N 0.31 TCGA-2W-A8YY-01 22 46785286 46785286 G A CELSR1 Silent p.D2152D 0.35 TCGA-2W-A8YY-01 22 46859803 46859803 C T CELSR1 Silent p.A1328A 0.24 TCGA-2W-A8YY-01 22 46931115 46931115 C A CELSR1 Missense_Mutation p.E651D 0.37 tolerated(0.4) benign(0.123) TCGA-2W-A8YY-01 22 46931219 46931219 C T CELSR1 Missense_Mutation p.A617T 0.42 tolerated(0.33) benign(0.265) TCGA-2W-A8YY-01 22 46931439 46931439 C T CELSR1 Silent p.P543P 0.34 TCGA-2W-A8YY-01 22 47058987 47058987 C T GRAMD4 Missense_Mutation p.R173W 0.33 deleterious(0.01) possibly_damaging(0.459) TCGA-2W-A8YY-01 22 47091185 47091185 C T CERK Missense_Mutation p.C324Y 0.56 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 22 47507416 47507416 G A TBC1D22A Missense_Mutation p.G448S 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-2W-A8YY-01 22 48885478 48885478 C T FAM19A5 Missense_Mutation p.A25V 0.49 tolerated(0.44) benign(0.032) TCGA-2W-A8YY-01 22 48885507 48885507 G A FAM19A5 Missense_Mutation p.A35T 0.40 tolerated(0.37) benign(0.037) TCGA-2W-A8YY-01 22 48972157 48972157 C T FAM19A5 Intron 0.29 TCGA-2W-A8YY-01 22 49146348 49146348 C T FAM19A5 3'UTR 0.39 TCGA-2W-A8YY-01 22 49290632 49290632 T C WI2-81516E3.1 RNA 0.17 TCGA-2W-A8YY-01 22 49290745 49290745 C T WI2-81516E3.1 RNA 0.35 TCGA-2W-A8YY-01 22 49291056 49291056 C T WI2-81516E3.1 RNA 0.29 TCGA-2W-A8YY-01 22 50167454 50167454 C T BRD1 3'UTR 0.25 TCGA-2W-A8YY-01 22 50167925 50167925 G A BRD1 Missense_Mutation p.R1045C 0.38 deleterious(0) possibly_damaging(0.895) TCGA-2W-A8YY-01 22 50170699 50170699 G A BRD1 Missense_Mutation p.A904V 0.40 tolerated(0.23) possibly_damaging(0.861) TCGA-2W-A8YY-01 22 50170755 50170755 C T BRD1 Silent p.T885T 0.37 TCGA-2W-A8YY-01 22 50170783 50170783 C T BRD1 Missense_Mutation p.G876D 0.34 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 22 50191478 50191478 C T BRD1 Silent p.P691P 0.35 TCGA-2W-A8YY-01 22 50217323 50217323 C T BRD1 Missense_Mutation p.A215T 0.50 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 22 50217938 50217938 C A BRD1 Missense_Mutation p.G10C 0.36 tolerated(0.09) possibly_damaging(0.469) TCGA-2W-A8YY-01 22 50278221 50278221 C T ZBED4 Missense_Mutation p.A304V 0.27 tolerated(0.06) probably_damaging(1) TCGA-2W-A8YY-01 22 50280305 50280305 G A ZBED4 Missense_Mutation p.D999N 0.12 deleterious(0.02) possibly_damaging(0.908) TCGA-2W-A8YY-01 22 50281100 50281100 T G ZBED4 3'UTR 0.36 TCGA-2W-A8YY-01 22 50282553 50282553 C T ZBED4 3'UTR 0.25 TCGA-2W-A8YY-01 22 50356875 50356875 C T PIM3 3'UTR 0.12 TCGA-2W-A8YY-01 22 50356985 50356985 C A PIM3 3'UTR 0.34 TCGA-2W-A8YY-01 22 50439549 50439549 G A IL17REL Missense_Mutation p.A24V 0.38 deleterious(0) benign(0.197) TCGA-2W-A8YY-01 22 50470275 50470275 C A TTLL8 Missense_Mutation p.R532M 0.45 deleterious(0) probably_damaging(0.981) TCGA-2W-A8YY-01 22 50523292 50523292 G A MLC1 Missense_Mutation p.R14W 0.48 deleterious_low_confidence(0) possibly_damaging(0.809) TCGA-2W-A8YY-01 22 50552080 50552080 C T MOV10L1 Silent p.D249D 0.44 TCGA-2W-A8YY-01 22 50552209 50552209 C A MOV10L1 Silent p.I292I 0.33 TCGA-2W-A8YY-01 22 50553550 50553550 T C MOV10L1 Silent p.C378C 0.39 TCGA-2W-A8YY-01 22 50631516 50631516 G A TRABD Silent p.P9P 0.39 TCGA-2W-A8YY-01 22 50636283 50636283 G A TRABD Missense_Mutation p.D235N 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 22 50637246 50637246 C T TRABD 3'UTR 0.27 TCGA-2W-A8YY-01 22 50657515 50657515 G A TUBGCP6 Silent p.S1536S 0.47 TCGA-2W-A8YY-01 22 50660025 50660025 C T TUBGCP6 Silent p.A921A 0.27 TCGA-2W-A8YY-01 22 50686898 50686898 C T HDAC10 Missense_Mutation p.G304S 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 50691660 50691660 C T MAPK12 3'UTR 0.54 TCGA-2W-A8YY-01 22 50694521 50694521 C T MAPK12 Silent p.T204T 0.24 TCGA-2W-A8YY-01 22 50704698 50704698 C T MAPK11 Missense_Mutation p.G240D 0.18 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 22 50706038 50706038 C T MAPK11 Missense_Mutation p.V89I 0.45 tolerated(0.22) probably_damaging(0.993) TCGA-2W-A8YY-01 22 50716038 50716038 C T PLXNB2 Silent p.T1726T 0.50 TCGA-2W-A8YY-01 22 50722072 50722072 C A PLXNB2 Silent p.R843R 0.43 TCGA-2W-A8YY-01 22 50724640 50724640 G A PLXNB2 Silent p.Y613Y 0.34 TCGA-2W-A8YY-01 22 50854528 50854528 A C PPP6R2 Missense_Mutation p.N187T 0.24 deleterious(0.01) possibly_damaging(0.844) TCGA-2W-A8YY-01 22 50862038 50862038 C T PPP6R2 Silent p.L375L 0.48 TCGA-2W-A8YY-01 22 50876277 50876277 C T PPP6R2 Missense_Mutation p.P570L 0.16 deleterious(0) probably_damaging(0.947) TCGA-2W-A8YY-01 22 50885619 50885619 C T SBF1 Silent p.S1878S 0.62 TCGA-2W-A8YY-01 22 50892968 50892968 C T SBF1 Silent p.Q1672Q 0.47 TCGA-2W-A8YY-01 22 50901126 50901126 C T SBF1 Silent p.T663T 0.13 TCGA-2W-A8YY-01 22 50904236 50904236 C T SBF1 Missense_Mutation p.A349T 0.22 deleterious(0.01) possibly_damaging(0.837) TCGA-2W-A8YY-01 22 50941961 50941961 G A LMF2 Silent p.L661L 0.12 TCGA-2W-A8YY-01 22 50943343 50943343 G A LMF2 Missense_Mutation p.A442V 0.45 tolerated(0.18) benign(0.084) TCGA-2W-A8YY-01 22 50955886 50955886 G A NCAPH2 Missense_Mutation p.A81T 0.19 tolerated(0.34) possibly_damaging(0.612) TCGA-2W-A8YY-01 22 50967691 50967691 C T TYMP Silent p.Q97Q 0.34 TCGA-2W-A8YY-01 22 50967943 50967943 C T TYMP Missense_Mutation p.A66T 0.15 tolerated(0.11) benign(0.081) TCGA-2W-A8YY-01 22 51009328 51009328 G T CPT1B Missense_Mutation p.L674I 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-2W-A8YY-01 22 51012091 51012091 G A CPT1B Missense_Mutation p.R342C 0.43 tolerated(0.12) benign(0.077) TCGA-2W-A8YY-01 22 51015021 51015021 A C CPT1B Missense_Mutation p.F169V 0.26 deleterious(0) possibly_damaging(0.546) TCGA-2W-A8YY-01 22 51064102 51064102 C T ARSA Missense_Mutation p.R372Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 22 51065734 51065734 C T ARSA Missense_Mutation p.V109M 0.29 tolerated(0.05) benign(0.033) TCGA-2W-A8YY-01 22 51169937 51169937 G A SHANK3 3'UTR 0.49 TCGA-2W-A8YY-01 22 51169979 51169979 G T SHANK3 3'UTR 0.35 TCGA-2W-A8YY-01 22 51208354 51208354 C T RABL2B Missense_Mutation p.V130M 0.31 deleterious(0.04) possibly_damaging(0.572) TCGA-2W-A8YY-01 2 100021087 100021087 C T REV1 Silent p.E955E 0.51 TCGA-2W-A8YY-01 2 100022384 100022384 C T REV1 Silent p.P933P 0.36 TCGA-2W-A8YY-01 2 100027194 100027194 T C REV1 Missense_Mutation p.K770E 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 100055596 100055596 C T REV1 Missense_Mutation p.G227E 0.09 deleterious(0.01) probably_damaging(0.959) TCGA-2W-A8YY-01 2 10016046 10016046 G T TAF1B Missense_Mutation p.K202N 0.37 tolerated(0.42) benign(0.006) TCGA-2W-A8YY-01 2 100210118 100210118 C A AFF3 Nonsense_Mutation p.E694* 0.48 TCGA-2W-A8YY-01 2 100453950 100453950 C A AFF3 Nonsense_Mutation p.E329* 0.09 TCGA-2W-A8YY-01 2 100628000 100628000 A G AFF3 Silent p.S29S 0.34 TCGA-2W-A8YY-01 2 100628020 100628020 A G AFF3 Silent p.L23L 0.47 TCGA-2W-A8YY-01 2 100925584 100925584 T C LONRF2 Silent p.E261E 0.14 TCGA-2W-A8YY-01 2 101009680 101009680 G T CHST10 3'UTR 0.50 TCGA-2W-A8YY-01 2 101093859 101093859 C T NMS Missense_Mutation p.H82Y 0.34 tolerated(0.47) benign(0.003) TCGA-2W-A8YY-01 2 101188160 101188160 T C PDCL3 Silent p.P159P 0.08 TCGA-2W-A8YY-01 2 101609874 101609874 C T NPAS2 Missense_Mutation p.P726L 0.35 tolerated(0.22) benign(0.006) TCGA-2W-A8YY-01 2 101612732 101612732 C T NPAS2 3'UTR 0.41 TCGA-2W-A8YY-01 2 101644513 101644513 G A TBC1D8 Silent p.N801N 0.30 TCGA-2W-A8YY-01 2 101644821 101644821 C T TBC1D8 Missense_Mutation p.D751N 0.31 tolerated(0.22) benign(0.07) TCGA-2W-A8YY-01 2 101654955 101654955 C T TBC1D8 Missense_Mutation p.V400M 0.33 tolerated(0.36) benign(0.018) TCGA-2W-A8YY-01 2 101879057 101879057 G A CNOT11 Missense_Mutation p.D246N 0.13 deleterious(0.03) probably_damaging(0.977) TCGA-2W-A8YY-01 2 101885938 101885938 C T CNOT11 3'UTR 0.23 TCGA-2W-A8YY-01 2 101892802 101892802 A C RNF149 3'UTR 0.29 TCGA-2W-A8YY-01 2 10198911 10198911 C T CYS1 3'UTR 0.52 TCGA-2W-A8YY-01 2 10269530 10269530 C T RRM2 3'UTR 0.45 TCGA-2W-A8YY-01 2 10282384 10282384 G A C2orf48 Silent p.G25G 0.33 TCGA-2W-A8YY-01 2 102954768 102954768 C T IL1RL1 Missense_Mutation p.S15F 0.24 tolerated(0.76) benign(0.001) TCGA-2W-A8YY-01 2 102959731 102959731 T G IL1RL1 Missense_Mutation p.F276V 0.42 tolerated(0.49) benign(0.026) TCGA-2W-A8YY-01 2 102959950 102959950 A T IL1RL1 Intron 0.56 TCGA-2W-A8YY-01 2 103012994 103012994 T C IL18R1 Missense_Mutation p.V425A 0.52 tolerated(0.13) benign(0.078) TCGA-2W-A8YY-01 2 103067469 103067469 G A IL18RAP Missense_Mutation p.A458T 0.38 tolerated(0.35) benign(0.074) TCGA-2W-A8YY-01 2 105473173 105473173 C T POU3F3 Missense_Mutation p.A402V 0.48 deleterious(0.04) possibly_damaging(0.561) TCGA-2W-A8YY-01 2 10583928 10583928 C T ODC1 Missense_Mutation p.A162T 0.11 deleterious(0.05) possibly_damaging(0.688) TCGA-2W-A8YY-01 2 105858762 105858762 G T GPR45 Missense_Mutation p.K149N 0.29 deleterious(0) probably_damaging(0.932) TCGA-2W-A8YY-01 2 105859084 105859084 G A GPR45 Missense_Mutation p.V257M 0.56 deleterious(0.04) benign(0.041) TCGA-2W-A8YY-01 2 105859379 105859379 G A GPR45 Missense_Mutation p.R355K 0.31 deleterious(0) probably_damaging(0.914) TCGA-2W-A8YY-01 2 105889329 105889329 C T TGFBRAP1 Missense_Mutation p.R652Q 0.27 deleterious(0.01) benign(0.167) TCGA-2W-A8YY-01 2 105896914 105896914 C A TGFBRAP1 Missense_Mutation p.S463I 0.22 deleterious(0.02) probably_damaging(0.924) TCGA-2W-A8YY-01 2 105897082 105897082 T C TGFBRAP1 Missense_Mutation p.Y407C 0.32 deleterious(0.02) possibly_damaging(0.566) TCGA-2W-A8YY-01 2 105897161 105897161 G A TGFBRAP1 Missense_Mutation p.R381W 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 105924698 105924698 C T TGFBRAP1 Missense_Mutation p.D21N 0.40 deleterious(0) possibly_damaging(0.467) TCGA-2W-A8YY-01 2 105977341 105977341 G A FHL2 3'UTR 0.35 TCGA-2W-A8YY-01 2 106471648 106471648 C T NCK2 Silent p.N43N 0.40 TCGA-2W-A8YY-01 2 106498104 106498104 C T NCK2 Missense_Mutation p.R183C 0.37 deleterious(0.04) possibly_damaging(0.551) TCGA-2W-A8YY-01 2 106498466 106498466 C T NCK2 Silent p.G303G 0.40 TCGA-2W-A8YY-01 2 106509636 106509636 C T NCK2 3'UTR 0.44 TCGA-2W-A8YY-01 2 106510004 106510004 G A NCK2 3'UTR 0.33 TCGA-2W-A8YY-01 2 106694419 106694419 C T C2orf40 3'UTR 0.31 TCGA-2W-A8YY-01 2 106694452 106694452 C T C2orf40 3'UTR 0.23 TCGA-2W-A8YY-01 2 106717573 106717573 C T UXS1 Missense_Mutation p.D309N 0.41 deleterious(0.01) probably_damaging(0.933) TCGA-2W-A8YY-01 2 106717574 106717574 G A UXS1 Silent p.S308S 0.43 TCGA-2W-A8YY-01 2 107040084 107040084 G A RGPD3 Missense_Mutation p.R1447C 0.19 deleterious(0.01) possibly_damaging(0.865) TCGA-2W-A8YY-01 2 107446641 107446641 C A ST6GAL2 Missense_Mutation p.R400I 0.23 possibly_damaging(0.845) TCGA-2W-A8YY-01 2 10747375 10747375 C T NOL10 Silent p.E363E 0.43 TCGA-2W-A8YY-01 2 10747431 10747431 C A NOL10 Missense_Mutation p.G345C 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 108627417 108627417 A G SLC5A7 3'UTR 0.43 TCGA-2W-A8YY-01 2 108869811 108869811 C T SULT1C3 Silent p.F104F 0.28 TCGA-2W-A8YY-01 2 108910767 108910767 C T SULT1C2 Silent p.H78H 0.38 TCGA-2W-A8YY-01 2 108999931 108999931 C T SULT1C4 Missense_Mutation p.R194C 0.32 tolerated(0.07) benign(0.065) TCGA-2W-A8YY-01 2 109103041 109103041 G A GCC2 Silent p.Q1289Q 0.36 TCGA-2W-A8YY-01 2 109113522 109113522 G A GCC2 Missense_Mutation p.R1580Q 0.41 deleterious(0.02) probably_damaging(0.992) TCGA-2W-A8YY-01 2 109116089 109116089 C T GCC2 Silent p.N1621N 0.16 TCGA-2W-A8YY-01 2 109292409 109292409 C T LIMS1 Silent p.V252V 0.40 TCGA-2W-A8YY-01 2 109336046 109336046 G A RANBP2 5'UTR 0.47 TCGA-2W-A8YY-01 2 109352661 109352661 G A RANBP2 Silent p.T246T 0.38 TCGA-2W-A8YY-01 2 109380052 109380052 G A RANBP2 Silent p.L1019L 0.17 TCGA-2W-A8YY-01 2 109382522 109382522 A G RANBP2 Missense_Mutation p.S1843G 0.11 tolerated(0.34) benign(0.004) TCGA-2W-A8YY-01 2 109382721 109382721 A C RANBP2 Missense_Mutation p.E1909A 0.36 tolerated(0.27) benign(0.003) TCGA-2W-A8YY-01 2 109400900 109400900 T C RANBP2 3'UTR 0.33 TCGA-2W-A8YY-01 2 109401147 109401147 C A RANBP2 3'UTR 0.41 TCGA-2W-A8YY-01 2 109513249 109513249 G A EDAR 3'UTR 0.37 TCGA-2W-A8YY-01 2 109522787 109522787 G A EDAR Missense_Mutation p.A334V 0.08 deleterious(0.02) probably_damaging(0.99) TCGA-2W-A8YY-01 2 109527374 109527374 G T EDAR Intron 0.38 TCGA-2W-A8YY-01 2 10977662 10977662 G A PDIA6 Missense_Mutation p.R24C 0.38 deleterious_low_confidence(0) benign(0.151) TCGA-2W-A8YY-01 2 10977854 10977854 C T PDIA6 5'UTR 0.40 TCGA-2W-A8YY-01 2 110303554 110303554 C T SEPT10 Intron 0.42 TCGA-2W-A8YY-01 2 110375203 110375203 A G SOWAHC 3'UTR 0.30 TCGA-2W-A8YY-01 2 110375760 110375760 C T SOWAHC 3'UTR 0.41 TCGA-2W-A8YY-01 2 110376066 110376066 A G SOWAHC 3'UTR 0.31 TCGA-2W-A8YY-01 2 11052979 11052979 C T KCNF1 Missense_Mutation p.R143C 0.55 deleterious(0) possibly_damaging(0.613) TCGA-2W-A8YY-01 2 11053037 11053037 G A KCNF1 Missense_Mutation p.R162H 0.33 tolerated(0.11) benign(0.086) TCGA-2W-A8YY-01 2 11053053 11053053 C T KCNF1 Silent p.C167C 0.50 TCGA-2W-A8YY-01 2 11054040 11054040 G T KCNF1 3'UTR 0.32 TCGA-2W-A8YY-01 2 111144379 111144379 C T LINC01106 5'Flank 0.14 TCGA-2W-A8YY-01 2 111144799 111144799 C T LINC01106 5'Flank 0.22 TCGA-2W-A8YY-01 2 111789280 111789280 A G ACOXL Missense_Mutation p.H453R 0.21 deleterious(0.03) benign(0.076) TCGA-2W-A8YY-01 2 111858670 111858670 C T ACOXL Intron 0.36 TCGA-2W-A8YY-01 2 111881467 111881467 G T BCL2L11 Nonsense_Mutation p.G49* 0.35 TCGA-2W-A8YY-01 2 112601008 112601008 C T ANAPC1 Missense_Mutation p.R674H 0.32 deleterious(0.01) possibly_damaging(0.667) TCGA-2W-A8YY-01 2 112702549 112702549 G A MERTK Silent p.V165V 0.33 TCGA-2W-A8YY-01 2 112740514 112740514 G A MERTK Missense_Mutation p.D414N 0.25 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 2 11300786 11300786 G A PQLC3 Missense_Mutation p.G88R 0.38 deleterious(0.03) probably_damaging(0.986) TCGA-2W-A8YY-01 2 11312136 11312136 C T PQLC3 Missense_Mutation p.A147V 0.53 tolerated(0.28) benign(0.004) TCGA-2W-A8YY-01 2 113240052 113240052 G T TTL Missense_Mutation p.R44M 0.47 deleterious(0) possibly_damaging(0.809) TCGA-2W-A8YY-01 2 113277951 113277951 A G TTL Missense_Mutation p.E323G 0.10 deleterious(0.04) benign(0.093) TCGA-2W-A8YY-01 2 113286913 113286913 T C TTL 3'UTR 0.36 TCGA-2W-A8YY-01 2 113308572 113308572 C T POLR1B Missense_Mutation p.A252V 0.12 tolerated(0.35) benign(0.002) TCGA-2W-A8YY-01 2 113309477 113309477 A G POLR1B Silent p.T296T 0.38 TCGA-2W-A8YY-01 2 113310340 113310340 T C POLR1B Silent p.L369L 0.39 TCGA-2W-A8YY-01 2 11332602 11332603 - T ROCK2 Frame_Shift_Ins p.E1309Gfs*12 0.30 TCGA-2W-A8YY-01 2 113343619 113343619 C T CHCHD5 Missense_Mutation p.A24V 0.39 tolerated(0.1) benign(0.01) TCGA-2W-A8YY-01 2 113346388 113346388 C A CHCHD5 Intron 0.29 TCGA-2W-A8YY-01 2 113418032 113418032 C T SLC20A1 Missense_Mutation p.A559V 0.39 tolerated(0.25) benign(0.005) TCGA-2W-A8YY-01 2 113514013 113514013 C A CKAP2L Missense_Mutation p.R312I 0.33 deleterious(0.03) benign(0.299) TCGA-2W-A8YY-01 2 11375839 11375839 T G ROCK2 Missense_Mutation p.K238Q 0.34 deleterious(0) benign(0.294) TCGA-2W-A8YY-01 2 113819727 113819727 C T IL36RN Missense_Mutation p.R48W 0.38 tolerated(0.12) possibly_damaging(0.525) TCGA-2W-A8YY-01 2 113832279 113832279 C T IL1F10 Intron 0.38 TCGA-2W-A8YY-01 2 113891074 113891074 T G IL1RN 3'UTR 0.30 TCGA-2W-A8YY-01 2 113950071 113950071 C T PSD4 Silent p.G581G 0.11 TCGA-2W-A8YY-01 2 113976143 113976143 C T PAX8 Silent p.P440P 0.13 TCGA-2W-A8YY-01 2 113984811 113984811 C T PAX8 Silent p.T370T 0.27 TCGA-2W-A8YY-01 2 113994260 113994260 G A PAX8 Silent p.D272D 0.11 TCGA-2W-A8YY-01 2 114004424 114004424 C T PAX8 Missense_Mutation p.R33H 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 2 114017075 114017075 C T PAX8 Intron 0.16 TCGA-2W-A8YY-01 2 114257145 114257145 G A FOXD4L1 Silent p.Q104Q 0.46 TCGA-2W-A8YY-01 2 114353283 114353283 A C WASH2P RNA 0.13 TCGA-2W-A8YY-01 2 114369783 114369783 G A RPL23AP7 RNA 0.34 TCGA-2W-A8YY-01 2 114513669 114513669 G T SLC35F5 Intron 0.62 TCGA-2W-A8YY-01 2 114691918 114691918 T C ACTR3 Silent p.G165G 0.28 TCGA-2W-A8YY-01 2 114709346 114709346 G A ACTR3 Missense_Mutation p.R334H 0.38 deleterious(0.02) benign(0.305) TCGA-2W-A8YY-01 2 11721169 11721169 G A GREB1 Intron 0.27 TCGA-2W-A8YY-01 2 11733097 11733097 A C GREB1 Missense_Mutation p.D514A 0.28 deleterious(0.01) benign(0.392) TCGA-2W-A8YY-01 2 11741099 11741099 A G GREB1 Missense_Mutation p.H836R 0.35 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 2 11758759 11758759 G A GREB1 Missense_Mutation p.C1253Y 0.13 tolerated(0.47) benign(0.003) TCGA-2W-A8YY-01 2 118582195 118582195 G T DDX18 Missense_Mutation p.D373Y 0.58 deleterious(0) probably_damaging(0.922) TCGA-2W-A8YY-01 2 118764318 118764318 G T CCDC93 Missense_Mutation p.N77K 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 118860890 118860890 C T INSIG2 Missense_Mutation p.A121V 0.30 deleterious(0) benign(0.41) TCGA-2W-A8YY-01 2 118864752 118864752 G A INSIG2 Missense_Mutation p.R208Q 0.43 deleterious(0) probably_damaging(0.957) TCGA-2W-A8YY-01 2 11905715 11905715 G T LPIN1 Missense_Mutation p.K65N 0.29 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 11925031 11925031 G A LPIN1 Missense_Mutation p.A509T 0.09 tolerated(0.51) benign(0.003) TCGA-2W-A8YY-01 2 11955342 11955342 G A LPIN1 Missense_Mutation p.S842N 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-2W-A8YY-01 2 120075054 120075054 T C C2orf76 Silent p.A70A 0.13 TCGA-2W-A8YY-01 2 120130068 120130068 C T DBI 3'UTR 0.34 TCGA-2W-A8YY-01 2 120383253 120383253 C T PCDP1 Missense_Mutation p.S502L 0.37 tolerated(0.09) benign(0.245) TCGA-2W-A8YY-01 2 120438719 120438719 G A TMEM177 Missense_Mutation p.R97K 0.44 tolerated(0.98) benign(0.214) TCGA-2W-A8YY-01 2 120439078 120439078 G A TMEM177 Missense_Mutation p.A217T 0.35 tolerated(0.39) benign(0.047) TCGA-2W-A8YY-01 2 120439613 120439613 C T TMEM177 3'UTR 0.10 TCGA-2W-A8YY-01 2 121747013 121747013 C A GLI2 Missense_Mutation p.Q1175K 0.50 tolerated(0.05) benign(0.081) TCGA-2W-A8YY-01 2 122006594 122006594 G A TFCP2L1 Missense_Mutation p.R121W 0.09 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 122122710 122122710 G A CLASP1 Missense_Mutation p.T1346I 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 122283448 122283448 G A CLASP1 Silent p.C173C 0.21 TCGA-2W-A8YY-01 2 122484964 122484964 G A NIFK 3'UTR 0.37 TCGA-2W-A8YY-01 2 122493283 122493283 C T NIFK Missense_Mutation p.R50H 0.27 deleterious(0.03) benign(0.007) TCGA-2W-A8YY-01 2 122522753 122522753 G A TSN Missense_Mutation p.R166Q 0.47 deleterious(0.04) benign(0.182) TCGA-2W-A8YY-01 2 1241667 1241667 G A SNTG2 Missense_Mutation p.A243T 0.32 deleterious(0) benign(0.284) TCGA-2W-A8YY-01 2 125281937 125281937 G A CNTNAP5 Missense_Mutation p.R461H 0.27 tolerated(0.96) probably_damaging(1) TCGA-2W-A8YY-01 2 125671711 125671711 G A CNTNAP5 Missense_Mutation p.G1256D 0.47 deleterious(0) probably_damaging(0.912) TCGA-2W-A8YY-01 2 1271236 1271236 G A SNTG2 Missense_Mutation p.A393T 0.31 tolerated(1) benign(0.15) TCGA-2W-A8YY-01 2 128014899 128014899 C T ERCC3 3'UTR 0.42 TCGA-2W-A8YY-01 2 128015196 128015196 C T ERCC3 Silent p.P775P 0.28 TCGA-2W-A8YY-01 2 128050245 128050245 C T ERCC3 Missense_Mutation p.E138K 0.40 tolerated(0.27) benign(0.097) TCGA-2W-A8YY-01 2 128066337 128066337 G A MAP3K2 Silent p.G486G 0.32 TCGA-2W-A8YY-01 2 128081484 128081484 T C MAP3K2 Missense_Mutation p.N278D 0.11 tolerated(0.17) benign(0.036) TCGA-2W-A8YY-01 2 128186321 128186321 G T PROC Missense_Mutation p.Q395H 0.33 deleterious(0.01) possibly_damaging(0.832) TCGA-2W-A8YY-01 2 128250886 128250886 G A IWS1 Missense_Mutation p.R634W 0.39 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 2 128367250 128367250 G A MYO7B Missense_Mutation p.R995Q 0.36 tolerated(0.19) benign(0.012) TCGA-2W-A8YY-01 2 128383104 128383104 C T MYO7B Silent p.C1377C 0.40 TCGA-2W-A8YY-01 2 128462302 128462302 A G WDR33 3'UTR 0.44 TCGA-2W-A8YY-01 2 128463925 128463925 G T WDR33 Missense_Mutation p.A1328D 0.11 tolerated_low_confidence(0.07) unknown(0) TCGA-2W-A8YY-01 2 128620027 128620027 G A AMMECR1L 3'UTR 0.21 TCGA-2W-A8YY-01 2 128621866 128621866 C T AMMECR1L 3'UTR 0.36 TCGA-2W-A8YY-01 2 128631431 128631431 T C AMMECR1L Silent p.P126P 0.38 TCGA-2W-A8YY-01 2 128631795 128631795 C T AMMECR1L Missense_Mutation p.R5H 0.38 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-2W-A8YY-01 2 12863650 12863650 C T TRIB2 Missense_Mutation p.R179W 0.28 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 128707976 128707976 G A SAP130 Missense_Mutation p.P836L 0.20 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-2W-A8YY-01 2 128775396 128775396 G T SAP130 Missense_Mutation p.P95H 0.35 deleterious_low_confidence(0.03) probably_damaging(0.976) TCGA-2W-A8YY-01 2 12880934 12880934 G A TRIB2 3'UTR 0.27 TCGA-2W-A8YY-01 2 12881486 12881486 G A TRIB2 3'UTR 0.36 TCGA-2W-A8YY-01 2 12882370 12882370 T C TRIB2 3'UTR 0.29 TCGA-2W-A8YY-01 2 12882526 12882526 C T TRIB2 3'UTR 0.08 TCGA-2W-A8YY-01 2 128886632 128886632 G A UGGT1 Missense_Mutation p.R419Q 0.41 deleterious(0.01) benign(0.118) TCGA-2W-A8YY-01 2 129026016 129026016 T C HS6ST1 Missense_Mutation p.Y319C 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 2 130877941 130877941 C T POTEF Missense_Mutation p.D50N 0.42 deleterious_low_confidence(0.04) benign(0.434) TCGA-2W-A8YY-01 2 130900049 130900049 G T CCDC74B Intron 0.27 TCGA-2W-A8YY-01 2 130925069 130925069 C T SMPD4 Missense_Mutation p.A291T 0.30 tolerated(0.07) benign(0.003) TCGA-2W-A8YY-01 2 130925139 130925139 G T SMPD4 Silent p.S267S 0.41 TCGA-2W-A8YY-01 2 130932532 130932532 C A SMPD4 Missense_Mutation p.Q66H 0.34 deleterious(0) possibly_damaging(0.891) TCGA-2W-A8YY-01 2 131103457 131103457 C T IMP4 Missense_Mutation p.A182V 0.43 tolerated(0.24) benign(0.023) TCGA-2W-A8YY-01 2 131104083 131104083 G A IMP4 3'UTR 0.45 TCGA-2W-A8YY-01 2 131128153 131128153 T C PTPN18 Missense_Mutation p.V238A 0.41 deleterious(0.01) probably_damaging(0.941) TCGA-2W-A8YY-01 2 131128796 131128796 G A PTPN18 Missense_Mutation p.A317T 0.22 deleterious(0.03) possibly_damaging(0.743) TCGA-2W-A8YY-01 2 131525197 131525197 G A AMER3 3'UTR 0.20 TCGA-2W-A8YY-01 2 131595235 131595235 G T AC133785.1 5'Flank 0.45 TCGA-2W-A8YY-01 2 131797996 131797996 G A ARHGEF4 Missense_Mutation p.A363T 0.24 tolerated(0.06) possibly_damaging(0.685) TCGA-2W-A8YY-01 2 131805637 131805637 C T FAM168B 3'UTR 0.22 TCGA-2W-A8YY-01 2 131805910 131805910 G A FAM168B 3'UTR 0.32 TCGA-2W-A8YY-01 2 131812923 131812923 G T FAM168B Missense_Mutation p.P133T 0.11 deleterious_low_confidence(0.01) benign(0.109) TCGA-2W-A8YY-01 2 131976228 131976228 G T POTEE Missense_Mutation p.D85Y 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.861) TCGA-2W-A8YY-01 2 131988476 131988476 C T POTEE Missense_Mutation p.P375S 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-2W-A8YY-01 2 132010536 132010536 A G POTEE Missense_Mutation p.T548A 0.05 tolerated_low_confidence(0.22) benign(0.007) TCGA-2W-A8YY-01 2 132010542 132010542 G A POTEE Missense_Mutation p.V550I 0.22 deleterious_low_confidence(0) benign(0.097) TCGA-2W-A8YY-01 2 132257870 132257870 C T AC093838.4 RNA 0.50 TCGA-2W-A8YY-01 2 132290601 132290601 G A CCDC74A Silent p.T322T 0.22 TCGA-2W-A8YY-01 2 133540574 133540574 G A NCKAP5 Silent p.G1270G 0.39 TCGA-2W-A8YY-01 2 133541081 133541081 C A NCKAP5 Missense_Mutation p.K1101N 0.34 deleterious(0.02) possibly_damaging(0.471) TCGA-2W-A8YY-01 2 133636435 133636435 G A NCKAP5 Nonsense_Mutation p.R212* 0.35 TCGA-2W-A8YY-01 2 135012084 135012084 G A MGAT5 Missense_Mutation p.R37Q 0.39 tolerated(0.12) benign(0.005) TCGA-2W-A8YY-01 2 135095861 135095861 A G MGAT5 Missense_Mutation p.Y226C 0.12 tolerated(0.07) probably_damaging(0.965) TCGA-2W-A8YY-01 2 135213681 135213681 C T TMEM163 3'UTR 0.39 TCGA-2W-A8YY-01 2 135712110 135712110 C T CCNT2 Silent p.N695N 0.17 TCGA-2W-A8YY-01 2 135741388 135741388 C T MAP3K19 Missense_Mutation p.S1027N 0.47 tolerated(0.1) benign(0.019) TCGA-2W-A8YY-01 2 135744584 135744584 T G MAP3K19 Missense_Mutation p.N620H 0.41 deleterious(0.03) benign(0.126) TCGA-2W-A8YY-01 2 135763082 135763082 T C MAP3K19 Missense_Mutation p.D53G 0.25 tolerated_low_confidence(0.12) benign(0.009) TCGA-2W-A8YY-01 2 135957678 135957678 C T ZRANB3 3'UTR 0.41 TCGA-2W-A8YY-01 2 136393518 136393518 C T R3HDM1 Missense_Mutation p.R253C 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 136399142 136399142 G A R3HDM1 Missense_Mutation p.G419D 0.10 deleterious(0.04) probably_damaging(0.979) TCGA-2W-A8YY-01 2 136409467 136409467 G A R3HDM1 Silent p.P596P 0.33 TCGA-2W-A8YY-01 2 136467055 136467055 C T R3HDM1 Nonsense_Mutation p.R803* 0.09 TCGA-2W-A8YY-01 2 136540359 136540359 G A UBXN4 Missense_Mutation p.D477N 0.36 deleterious(0.02) benign(0.068) TCGA-2W-A8YY-01 2 136566313 136566313 C T LCT Missense_Mutation p.D1202N 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 136567094 136567094 G A LCT Silent p.S941S 0.42 TCGA-2W-A8YY-01 2 136872479 136872479 A C CXCR4 Missense_Mutation p.V344G 0.29 tolerated(0.12) unknown(0) TCGA-2W-A8YY-01 2 138030231 138030231 C T THSD7B Missense_Mutation p.R799W 0.14 deleterious(0) possibly_damaging(0.835) TCGA-2W-A8YY-01 2 138329979 138329979 T C THSD7B Silent p.C1095C 0.43 TCGA-2W-A8YY-01 2 138420999 138420999 C T THSD7B Missense_Mutation p.S1505L 0.10 deleterious(0) unknown(0) TCGA-2W-A8YY-01 2 138434577 138434577 G A THSD7B 3'UTR 0.44 TCGA-2W-A8YY-01 2 141055395 141055395 C T LRP1B Missense_Mutation p.G4317R 0.26 probably_damaging(0.956) TCGA-2W-A8YY-01 2 141114006 141114006 C T LRP1B Missense_Mutation p.C3812Y 0.38 benign(0.384) TCGA-2W-A8YY-01 2 141143503 141143503 C T LRP1B Missense_Mutation p.S3497N 0.38 benign(0.012) TCGA-2W-A8YY-01 2 141299408 141299408 G A LRP1B Missense_Mutation p.R2443C 0.38 possibly_damaging(0.689) TCGA-2W-A8YY-01 2 141526881 141526881 C T LRP1B Missense_Mutation p.E1887K 0.29 benign(0.292) TCGA-2W-A8YY-01 2 141709492 141709492 G A LRP1B Missense_Mutation p.P969S 0.39 probably_damaging(0.973) TCGA-2W-A8YY-01 2 141739807 141739807 C T LRP1B Missense_Mutation p.G937R 0.43 probably_damaging(0.999) TCGA-2W-A8YY-01 2 141986887 141986887 C T LRP1B Missense_Mutation p.D239N 0.33 possibly_damaging(0.539) TCGA-2W-A8YY-01 2 145156562 145156562 G T ZEB2 Missense_Mutation p.S731Y 0.32 deleterious(0) possibly_damaging(0.854) TCGA-2W-A8YY-01 2 145157356 145157356 A G ZEB2 Silent p.I466I 0.45 TCGA-2W-A8YY-01 2 145157726 145157726 C T ZEB2 Missense_Mutation p.R343Q 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-2W-A8YY-01 2 145161593 145161593 G A ZEB2 Missense_Mutation p.R233C 0.38 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 148674931 148674931 G A ACVR2A Missense_Mutation p.G251D 0.47 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 2 148684906 148684906 A C ACVR2A 3'UTR 0.27 TCGA-2W-A8YY-01 2 148686024 148686024 T C ACVR2A 3'UTR 0.39 TCGA-2W-A8YY-01 2 149216379 149216379 G A MBD5 Missense_Mutation p.A18T 0.38 tolerated(0.08) possibly_damaging(0.682) TCGA-2W-A8YY-01 2 149241582 149241582 C T MBD5 Intron 0.38 TCGA-2W-A8YY-01 2 149686884 149686884 G A KIF5C Silent p.A84A 0.40 TCGA-2W-A8YY-01 2 149837962 149837962 G T KIF5C Nonsense_Mutation p.E486* 0.37 TCGA-2W-A8YY-01 2 1499888 1499888 G A TPO Missense_Mutation p.G712S 0.29 tolerated(0.11) benign(0.271) TCGA-2W-A8YY-01 2 150329394 150329394 C A LYPD6 3'UTR 0.35 TCGA-2W-A8YY-01 2 151325784 151325784 A G RND3 3'UTR 0.27 TCGA-2W-A8YY-01 2 151326624 151326624 G A RND3 Silent p.N204N 0.33 TCGA-2W-A8YY-01 2 151326723 151326723 T C RND3 Silent p.A171A 0.50 TCGA-2W-A8YY-01 2 152107714 152107714 A G RBM43 Silent p.C260C 0.08 TCGA-2W-A8YY-01 2 152112103 152112103 A G RBM43 Missense_Mutation p.V53A 0.30 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 2 152320593 152320593 A G RIF1 Missense_Mutation p.D1520G 0.43 tolerated(0.08) benign(0.053) TCGA-2W-A8YY-01 2 152321208 152321208 G A RIF1 Missense_Mutation p.R1725K 0.44 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 2 152321779 152321779 A C RIF1 Missense_Mutation p.K1915N 0.36 deleterious_low_confidence(0) benign(0.011) TCGA-2W-A8YY-01 2 152410419 152410419 G A NEB Missense_Mutation p.R6517C 0.46 possibly_damaging(0.791) TCGA-2W-A8YY-01 2 152411467 152411467 C T NEB Missense_Mutation p.R6469Q 0.10 probably_damaging(0.959) TCGA-2W-A8YY-01 2 152420121 152420121 G A NEB Missense_Mutation p.A6231V 0.31 benign(0.025) TCGA-2W-A8YY-01 2 152490210 152490210 G A NEB Silent p.S3124S 0.45 TCGA-2W-A8YY-01 2 152497148 152497148 G A NEB Silent p.L2802L 0.34 TCGA-2W-A8YY-01 2 152518767 152518767 G A NEB Missense_Mutation p.A1951V 0.34 probably_damaging(0.983) TCGA-2W-A8YY-01 2 152522678 152522678 A G NEB Missense_Mutation p.Y1653H 0.33 benign(0.172) TCGA-2W-A8YY-01 2 152580001 152580001 C T NEB Splice_Site p.X205_splice 0.11 TCGA-2W-A8YY-01 2 152663369 152663369 G A ARL5A Missense_Mutation p.H153Y 0.37 tolerated(0.47) probably_damaging(0.995) TCGA-2W-A8YY-01 2 152976605 152976605 C A STAM2 3'UTR 0.51 TCGA-2W-A8YY-01 2 152989708 152989708 G - STAM2 Frame_Shift_Del p.Q317Kfs*6 0.21 TCGA-2W-A8YY-01 2 153493099 153493099 G A FMNL2 Missense_Mutation p.A947T 0.33 possibly_damaging(0.695) TCGA-2W-A8YY-01 2 153526876 153526876 C T PRPF40A Missense_Mutation p.R500Q 0.35 deleterious(0.03) benign(0.238) TCGA-2W-A8YY-01 2 153527793 153527793 T - PRPF40A Frame_Shift_Del p.E492Kfs*16 0.34 TCGA-2W-A8YY-01 2 15359017 15359017 C T NBAS Silent p.R2104R 0.45 TCGA-2W-A8YY-01 2 153616858 153616858 A G ARL6IP6 3'UTR 0.31 TCGA-2W-A8YY-01 2 15378628 15378628 G A NBAS Silent p.S1969S 0.43 TCGA-2W-A8YY-01 2 155303173 155303173 G A GALNT13 Intron 0.45 TCGA-2W-A8YY-01 2 155555357 155555357 T C KCNJ3 Silent p.L24L 0.13 TCGA-2W-A8YY-01 2 155555821 155555821 C A KCNJ3 Silent p.G178G 0.14 TCGA-2W-A8YY-01 2 155566218 155566218 C T KCNJ3 Missense_Mutation p.T269I 0.38 tolerated(0.44) probably_damaging(1) TCGA-2W-A8YY-01 2 155712931 155712931 C G KCNJ3 3'UTR 0.41 TCGA-2W-A8YY-01 2 15694211 15694211 C T NBAS Silent p.Q87Q 0.28 TCGA-2W-A8YY-01 2 157182214 157182214 C T NR4A2 3'UTR 0.40 TCGA-2W-A8YY-01 2 157186025 157186025 C T NR4A2 Missense_Mutation p.R225H 0.30 tolerated(0.27) possibly_damaging(0.899) TCGA-2W-A8YY-01 2 157186647 157186647 C T NR4A2 Missense_Mutation p.A18T 0.44 deleterious(0.03) benign(0.313) TCGA-2W-A8YY-01 2 157407180 157407180 G A GPD2 Missense_Mutation p.R298H 0.34 deleterious(0.03) possibly_damaging(0.503) TCGA-2W-A8YY-01 2 157407249 157407249 G A GPD2 Missense_Mutation p.G321D 0.33 tolerated(0.3) benign(0.439) TCGA-2W-A8YY-01 2 15742715 15742715 G T DDX1 Missense_Mutation p.K117N 0.43 tolerated(0.06) benign(0.178) TCGA-2W-A8YY-01 2 15746357 15746357 G T DDX1 Silent p.P262P 0.17 TCGA-2W-A8YY-01 2 15771109 15771109 G A DDX1 3'UTR 0.31 TCGA-2W-A8YY-01 2 158142583 158142583 C A GALNT5 Missense_Mutation p.L560I 0.36 tolerated(0.17) possibly_damaging(0.823) TCGA-2W-A8YY-01 2 159028732 159028732 G A CCDC148 Nonsense_Mutation p.R557* 0.47 TCGA-2W-A8YY-01 2 159517011 159517011 G A PKP4 Intron 0.35 TCGA-2W-A8YY-01 2 160019813 160019813 C T TANC1 Silent p.S234S 0.35 TCGA-2W-A8YY-01 2 160031576 160031576 G A TANC1 Missense_Mutation p.R539K 0.09 deleterious(0.05) benign(0.076) TCGA-2W-A8YY-01 2 160074081 160074081 G A TANC1 Silent p.S1106S 0.37 TCGA-2W-A8YY-01 2 160085341 160085341 C T TANC1 Missense_Mutation p.A1362V 0.46 tolerated(0.05) probably_damaging(1) TCGA-2W-A8YY-01 2 160087129 160087129 C T TANC1 Missense_Mutation p.A1731V 0.37 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-2W-A8YY-01 2 160087192 160087192 T G TANC1 Missense_Mutation p.L1752R 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.677) TCGA-2W-A8YY-01 2 160176067 160176067 A C BAZ2B 3'UTR 0.35 TCGA-2W-A8YY-01 2 160193571 160193571 G T BAZ2B Missense_Mutation p.A1893D 0.36 probably_damaging(0.978) TCGA-2W-A8YY-01 2 160284822 160284822 C A BAZ2B Missense_Mutation p.K788N 0.38 probably_damaging(0.999) TCGA-2W-A8YY-01 2 160628300 160628300 C A CD302 3'UTR 0.40 TCGA-2W-A8YY-01 2 160673450 160673450 T C LY75-CD302 Missense_Mutation p.Y1416C 0.50 deleterious(0.01) probably_damaging(0.993) TCGA-2W-A8YY-01 2 160697369 160697369 A G LY75-CD302 Silent p.S1126S 0.28 TCGA-2W-A8YY-01 2 160737594 160737594 C T LY75-CD302 Silent p.E468E 0.26 TCGA-2W-A8YY-01 2 16085939 16085939 C T MYCN Missense_Mutation p.P372L 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 160862163 160862163 G A PLA2R1 Missense_Mutation p.R612C 0.45 tolerated(0.09) probably_damaging(0.973) TCGA-2W-A8YY-01 2 16086652 16086652 A G MYCN 3'UTR 0.40 TCGA-2W-A8YY-01 2 16087080 16087080 A G MYCN 3'UTR 0.29 TCGA-2W-A8YY-01 2 160901294 160901294 G T PLA2R1 Missense_Mutation p.L162I 0.21 tolerated(0.5) benign(0.094) TCGA-2W-A8YY-01 2 161052077 161052077 C T ITGB6 Silent p.P132P 0.23 TCGA-2W-A8YY-01 2 161133833 161133833 G A RBMS1 Missense_Mutation p.T375M 0.19 deleterious(0.01) possibly_damaging(0.512) TCGA-2W-A8YY-01 2 162480995 162480995 G A SLC4A10 5'UTR 0.36 TCGA-2W-A8YY-01 2 162760552 162760552 C T SLC4A10 Missense_Mutation p.A494V 0.37 tolerated(0.37) benign(0.014) TCGA-2W-A8YY-01 2 162849225 162849225 C A DPP4 3'UTR 0.40 TCGA-2W-A8YY-01 2 162999718 162999718 T - GCG 3'UTR 0.30 TCGA-2W-A8YY-01 2 163059389 163059389 C T FAP Missense_Mutation p.D406N 0.22 tolerated(0.37) benign(0.038) TCGA-2W-A8YY-01 2 163082028 163082028 C A FAP Nonsense_Mutation p.G84* 0.34 TCGA-2W-A8YY-01 2 163134070 163134070 C T IFIH1 Silent p.E633E 0.09 TCGA-2W-A8YY-01 2 163241217 163241217 T C KCNH7 Silent p.K981K 0.09 TCGA-2W-A8YY-01 2 163291751 163291751 C T KCNH7 Silent p.T637T 0.27 TCGA-2W-A8YY-01 2 163374328 163374328 A G KCNH7 Silent p.C268C 0.33 TCGA-2W-A8YY-01 2 164466900 164466900 G T FIGN Missense_Mutation p.P481H 0.40 deleterious(0.02) benign(0.002) TCGA-2W-A8YY-01 2 165551774 165551774 C T COBLL1 Missense_Mutation p.D748N 0.40 deleterious(0) probably_damaging(0.929) TCGA-2W-A8YY-01 2 1658277 1658277 G T PXDN Missense_Mutation p.P614H 0.34 tolerated(0.06) possibly_damaging(0.827) TCGA-2W-A8YY-01 2 165984485 165984485 A G SCN3A Missense_Mutation p.Y1017H 0.33 tolerated(0.06) benign(0.412) TCGA-2W-A8YY-01 2 166019198 166019198 G A SCN3A Nonsense_Mutation p.Q279* 0.33 TCGA-2W-A8YY-01 2 166153576 166153576 C T SCN2A Missense_Mutation p.T106I 0.39 deleterious(0) benign(0.426) TCGA-2W-A8YY-01 2 166170214 166170214 C A SCN2A Silent p.A373A 0.28 TCGA-2W-A8YY-01 2 166201176 166201176 G A SCN2A Missense_Mutation p.V892I 0.47 tolerated(0.05) probably_damaging(0.997) TCGA-2W-A8YY-01 2 166247378 166247378 T C SCN2A 3'UTR 0.36 TCGA-2W-A8YY-01 2 166535235 166535235 G A CSRNP3 Missense_Mutation p.G244S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 2 166535421 166535421 G A CSRNP3 Missense_Mutation p.A306T 0.39 tolerated(0.67) benign(0.001) TCGA-2W-A8YY-01 2 166536815 166536815 G A CSRNP3 3'UTR 0.10 TCGA-2W-A8YY-01 2 1665907 1665907 G A PXDN Silent p.G539G 0.45 TCGA-2W-A8YY-01 2 166605000 166605000 A G GALNT3 3'UTR 0.39 TCGA-2W-A8YY-01 2 1667509 1667509 G A PXDN Missense_Mutation p.H479Y 0.50 tolerated(0.3) benign(0.082) TCGA-2W-A8YY-01 2 166848040 166848040 C T SCN1A Silent p.E1915E 0.51 TCGA-2W-A8YY-01 2 167269585 167269585 G T SCN7A Missense_Mutation p.S1154Y 0.47 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 2 167289261 167289261 A G SCN7A Missense_Mutation p.V720A 0.23 deleterious(0) benign(0.257) TCGA-2W-A8YY-01 2 167298248 167298248 C T SCN7A Silent p.K605K 0.50 TCGA-2W-A8YY-01 2 167328941 167328941 C T SCN7A Missense_Mutation p.G153E 0.42 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 2 168100507 168100507 G T XIRP2 Missense_Mutation p.G869C 0.41 probably_damaging(1) TCGA-2W-A8YY-01 2 168103001 168103001 G A XIRP2 Missense_Mutation p.G1700D 0.14 benign(0.041) TCGA-2W-A8YY-01 2 168103475 168103475 C T XIRP2 Missense_Mutation p.T1858M 0.11 benign(0.143) TCGA-2W-A8YY-01 2 168107347 168107347 A C XIRP2 Missense_Mutation p.S3149R 0.39 benign(0.015) TCGA-2W-A8YY-01 2 168727289 168727290 TT - B3GALT1 3'UTR 0.33 TCGA-2W-A8YY-01 2 168810671 168810671 C T STK39 3'UTR 0.10 TCGA-2W-A8YY-01 2 168996826 168996826 C T STK39 Silent p.A271A 0.41 TCGA-2W-A8YY-01 2 169870837 169870837 G A ABCB11 Silent p.G42G 0.48 TCGA-2W-A8YY-01 2 169984602 169984602 G T LRP2 3'UTR 0.12 TCGA-2W-A8YY-01 2 169995796 169995796 G A LRP2 Silent p.T4451T 0.47 TCGA-2W-A8YY-01 2 170032934 170032934 C T LRP2 Missense_Mutation p.A3520T 0.33 benign(0.327) TCGA-2W-A8YY-01 2 170097668 170097668 C T LRP2 Missense_Mutation p.R1292Q 0.49 benign(0.003) TCGA-2W-A8YY-01 2 170103951 170103951 C A LRP2 Missense_Mutation p.V949F 0.10 possibly_damaging(0.646) TCGA-2W-A8YY-01 2 170134297 170134297 C T LRP2 Missense_Mutation p.R577Q 0.39 probably_damaging(0.982) TCGA-2W-A8YY-01 2 170177381 170177381 C T LRP2 Silent p.A31A 0.52 TCGA-2W-A8YY-01 2 170361317 170361317 C T BBS5 3'UTR 0.42 TCGA-2W-A8YY-01 2 170361390 170361390 C T BBS5 3'UTR 0.41 TCGA-2W-A8YY-01 2 170366942 170366942 G A KLHL41 Silent p.V218V 0.31 TCGA-2W-A8YY-01 2 170460756 170460756 C T PPIG Missense_Mutation p.R41C 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 170493979 170493980 - A PPIG Frame_Shift_Ins p.F740Ifs*2 0.20 TCGA-2W-A8YY-01 2 170531513 170531513 C T CCDC173 Missense_Mutation p.R111H 0.33 deleterious(0.02) benign(0.124) TCGA-2W-A8YY-01 2 170592280 170592280 C T KLHL23 Silent p.I252I 0.27 TCGA-2W-A8YY-01 2 170668796 170668796 G T METTL5 Intron 0.62 TCGA-2W-A8YY-01 2 171056754 171056754 C T MYO3B Missense_Mutation p.A94V 0.42 tolerated(0.06) benign(0.015) TCGA-2W-A8YY-01 2 171239610 171239610 C T MYO3B Missense_Mutation p.R366C 0.36 tolerated(0.16) possibly_damaging(0.841) TCGA-2W-A8YY-01 2 171259362 171259362 G A MYO3B Missense_Mutation p.A712T 0.29 tolerated(0.65) benign(0.014) TCGA-2W-A8YY-01 2 171570371 171570371 C T LINC01124 Missense_Mutation p.G195S 0.58 unknown(0) TCGA-2W-A8YY-01 2 171640370 171640370 G T ERICH2 Nonsense_Mutation p.E8* 0.19 TCGA-2W-A8YY-01 2 171649411 171649411 A - ERICH2 Frame_Shift_Del p.K87Nfs*5 0.32 TCGA-2W-A8YY-01 2 171806206 171806206 G A GORASP2 Missense_Mutation p.R101H 0.41 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 171822701 171822701 G A GORASP2 3'UTR 0.27 TCGA-2W-A8YY-01 2 171850240 171850240 T C TLK1 3'UTR 0.44 TCGA-2W-A8YY-01 2 171863133 171863133 T A TLK1 Missense_Mutation p.Y540F 0.24 tolerated(0.11) benign(0.181) TCGA-2W-A8YY-01 2 172187135 172187135 G T METTL8 Missense_Mutation p.P265H 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 172195891 172195891 C T METTL8 Missense_Mutation p.A137T 0.29 tolerated(0.52) benign(0.004) TCGA-2W-A8YY-01 2 172411152 172411152 C T CYBRD1 Missense_Mutation p.R226C 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 172641694 172641694 T C SLC25A12 3'UTR 0.32 TCGA-2W-A8YY-01 2 172641890 172641890 G A SLC25A12 Missense_Mutation p.A644V 0.26 tolerated(0.06) benign(0.259) TCGA-2W-A8YY-01 2 172954214 172954214 G A DLX1 3'UTR 0.48 TCGA-2W-A8YY-01 2 173292589 173292589 A G ITGA6 Missense_Mutation p.N25D 0.31 deleterious(0) probably_damaging(0.942) TCGA-2W-A8YY-01 2 173352900 173352900 G A ITGA6 Missense_Mutation p.E817K 0.38 deleterious(0) possibly_damaging(0.79) TCGA-2W-A8YY-01 2 173370816 173370816 C T ITGA6 3'UTR 0.09 TCGA-2W-A8YY-01 2 173423558 173423558 G A PDK1 Missense_Mutation p.V107I 0.33 deleterious(0.03) benign(0.036) TCGA-2W-A8YY-01 2 173431623 173431623 A G PDK1 Missense_Mutation p.Y244C 0.40 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 173431646 173431646 C T PDK1 Missense_Mutation p.L252F 0.40 tolerated(0.23) possibly_damaging(0.499) TCGA-2W-A8YY-01 2 173898653 173898653 C T RAPGEF4 Silent p.S887S 0.38 TCGA-2W-A8YY-01 2 174091485 174091485 T C MLTK Intron 0.15 TCGA-2W-A8YY-01 2 174830052 174830052 G A SP3 5'UTR 0.45 TCGA-2W-A8YY-01 2 175213416 175213416 G A CIR1 Missense_Mutation p.R388W 0.27 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-2W-A8YY-01 2 175264805 175264805 A C SCRN3 Missense_Mutation p.E105D 0.45 tolerated(0.08) benign(0.119) TCGA-2W-A8YY-01 2 175293237 175293237 C T SCRN3 3'UTR 0.47 TCGA-2W-A8YY-01 2 175318474 175318474 A G GPR155 Missense_Mutation p.F623L 0.32 tolerated(0.72) benign(0.001) TCGA-2W-A8YY-01 2 175427150 175427150 C T WIPF1 3'UTR 0.36 TCGA-2W-A8YY-01 2 175436361 175436361 C G WIPF1 Intron 0.38 TCGA-2W-A8YY-01 2 175664774 175664774 G A CHN1 3'UTR 0.39 TCGA-2W-A8YY-01 2 175742774 175742774 C T CHN1 Missense_Mutation p.D115N 0.40 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 2 175742819 175742819 C T CHN1 Missense_Mutation p.D100N 0.42 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 2 175982762 175982762 C T ATF2 Missense_Mutation p.D135N 0.37 tolerated(0.15) benign(0.006) TCGA-2W-A8YY-01 2 176794101 176794101 C T KIAA1715 3'UTR 0.39 TCGA-2W-A8YY-01 2 17692185 17692185 C T RAD51AP2 Silent p.P1122P 0.26 TCGA-2W-A8YY-01 2 176958207 176958207 A G HOXD13 Missense_Mutation p.T197A 0.10 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 2 176959430 176959430 T C HOXD13 Missense_Mutation p.V335A 0.26 deleterious(0.02) benign(0.024) TCGA-2W-A8YY-01 2 176960170 176960170 T C HOXD13 3'UTR 0.22 TCGA-2W-A8YY-01 2 176972113 176972113 C T HOXD11 Silent p.S10S 0.45 TCGA-2W-A8YY-01 2 176973835 176973835 C T HOXD11 Missense_Mutation p.R328C 0.86 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 176989430 176989430 C T HOXD9 3'UTR 0.35 TCGA-2W-A8YY-01 2 176996552 176996552 G A HOXD8 3'UTR 0.50 TCGA-2W-A8YY-01 2 177037115 177037115 C T HOXD3 3'UTR 0.43 TCGA-2W-A8YY-01 2 177054137 177054137 G A HOXD1 Missense_Mutation p.S203N 0.24 tolerated(0.41) benign(0.018) TCGA-2W-A8YY-01 2 17721926 17721926 C T VSNL1 5'Flank 0.32 TCGA-2W-A8YY-01 2 177502417 177502417 G A LINC01116 RNA 0.54 TCGA-2W-A8YY-01 2 178087513 178087514 - A HNRNPA3 3'Flank 0.35 TCGA-2W-A8YY-01 2 178087711 178087711 C T HNRNPA3 3'Flank 0.30 TCGA-2W-A8YY-01 2 178087784 178087784 T C HNRNPA3 3'Flank 0.14 TCGA-2W-A8YY-01 2 178305692 178305692 G T AGPS Splice_Site p.X213_splice 0.37 TCGA-2W-A8YY-01 2 178415870 178415870 T C TTC30B Missense_Mutation p.Y541C 0.09 deleterious(0) possibly_damaging(0.827) TCGA-2W-A8YY-01 2 178417515 178417515 C T TTC30B 5'UTR 0.29 TCGA-2W-A8YY-01 2 17846709 17846710 - T SMC6 3'UTR 0.33 TCGA-2W-A8YY-01 2 17860199 17860199 T C SMC6 Missense_Mutation p.D946G 0.41 deleterious(0.02) benign(0.028) TCGA-2W-A8YY-01 2 17877606 17877606 T C SMC6 Missense_Mutation p.T828A 0.34 tolerated(0.45) benign(0.038) TCGA-2W-A8YY-01 2 17902437 17902437 G A SMC6 Missense_Mutation p.S273F 0.34 tolerated(0.06) benign(0.005) TCGA-2W-A8YY-01 2 17913034 17913034 C T SMC6 Missense_Mutation p.R152Q 0.42 deleterious(0.02) possibly_damaging(0.509) TCGA-2W-A8YY-01 2 179171006 179171006 G T OSBPL6 Missense_Mutation p.S32I 0.38 deleterious(0) possibly_damaging(0.674) TCGA-2W-A8YY-01 2 179255872 179255872 C T OSBPL6 Missense_Mutation p.R817W 0.28 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 2 179296854 179296854 C T PRKRA Silent p.Q304Q 0.37 TCGA-2W-A8YY-01 2 179320828 179320828 C T DFNB59 Nonsense_Mutation p.R167* 0.46 TCGA-2W-A8YY-01 2 179392403 179392403 G A TTN Missense_Mutation p.S35817L 0.29 TCGA-2W-A8YY-01 2 179393074 179393074 G A TTN Silent p.D35768D 0.09 TCGA-2W-A8YY-01 2 179396767 179396767 G A TTN Missense_Mutation p.R34859W 0.37 TCGA-2W-A8YY-01 2 179396860 179396860 C A TTN Nonsense_Mutation p.E34828* 0.13 TCGA-2W-A8YY-01 2 179397203 179397203 T C TTN Silent p.P34713P 0.47 TCGA-2W-A8YY-01 2 179399566 179399566 C A TTN Missense_Mutation p.A33926S 0.46 TCGA-2W-A8YY-01 2 179400735 179400735 G A TTN Missense_Mutation p.S33580F 0.31 TCGA-2W-A8YY-01 2 179401832 179401832 T C TTN Missense_Mutation p.E33335G 0.39 TCGA-2W-A8YY-01 2 179401882 179401882 G A TTN Silent p.D33318D 0.41 TCGA-2W-A8YY-01 2 179402372 179402372 G A TTN Missense_Mutation p.L33188F 0.10 TCGA-2W-A8YY-01 2 179404292 179404292 C T TTN Missense_Mutation p.E32834K 0.55 TCGA-2W-A8YY-01 2 179404833 179404833 G A TTN Missense_Mutation p.A32687V 0.39 TCGA-2W-A8YY-01 2 179406125 179406125 C T TTN Missense_Mutation p.R32560H 0.50 TCGA-2W-A8YY-01 2 179408063 179408063 C T TTN Missense_Mutation p.D32213N 0.33 TCGA-2W-A8YY-01 2 179409083 179409083 C T TTN Missense_Mutation p.R31958Q 0.33 TCGA-2W-A8YY-01 2 179409151 179409151 G A TTN Silent p.Y31935Y 0.30 TCGA-2W-A8YY-01 2 179411075 179411075 T G TTN Missense_Mutation p.K31661N 0.36 TCGA-2W-A8YY-01 2 179411398 179411398 G A TTN Missense_Mutation p.A31586V 0.28 TCGA-2W-A8YY-01 2 179411445 179411445 G A TTN Silent p.T31570T 0.35 TCGA-2W-A8YY-01 2 179411952 179411952 G A TTN Missense_Mutation p.H31434Y 0.53 TCGA-2W-A8YY-01 2 179412413 179412413 C T TTN Missense_Mutation p.G31314S 0.33 TCGA-2W-A8YY-01 2 179413723 179413723 A G TTN Missense_Mutation p.V30877A 0.10 TCGA-2W-A8YY-01 2 179418502 179418502 C T TTN Missense_Mutation p.A29744T 0.25 TCGA-2W-A8YY-01 2 179422585 179422585 C T TTN Missense_Mutation p.G29166S 0.40 TCGA-2W-A8YY-01 2 17942776 17942776 C T GEN1 Missense_Mutation p.S92F 0.46 deleterious(0.01) benign(0.003) TCGA-2W-A8YY-01 2 179428017 179428017 C T TTN Silent p.A27614A 0.60 TCGA-2W-A8YY-01 2 179435051 179435051 G A TTN Missense_Mutation p.L25270F 0.50 TCGA-2W-A8YY-01 2 179437549 179437549 A C TTN Missense_Mutation p.V24437G 0.33 TCGA-2W-A8YY-01 2 179438075 179438075 G A TTN Missense_Mutation p.R24262C 0.45 TCGA-2W-A8YY-01 2 179440214 179440214 C T TTN Missense_Mutation p.V23549I 0.33 TCGA-2W-A8YY-01 2 179441858 179441858 G A TTN Silent p.G23068G 0.39 TCGA-2W-A8YY-01 2 179442081 179442081 G A TTN Missense_Mutation p.T22994I 0.29 TCGA-2W-A8YY-01 2 179444409 179444409 G A TTN Silent p.S22505S 0.34 TCGA-2W-A8YY-01 2 179447783 179447783 C T TTN Missense_Mutation p.R21916Q 0.33 TCGA-2W-A8YY-01 2 179449874 179449874 C T TTN Missense_Mutation p.D21533N 0.61 TCGA-2W-A8YY-01 2 179452434 179452434 C T TTN Missense_Mutation p.R21201Q 0.27 TCGA-2W-A8YY-01 2 179454063 179454063 G A TTN Missense_Mutation p.P20797S 0.38 TCGA-2W-A8YY-01 2 179454322 179454322 C A TTN Missense_Mutation p.K20710N 0.36 TCGA-2W-A8YY-01 2 179462487 179462487 C A TTN Missense_Mutation p.G19108W 0.16 TCGA-2W-A8YY-01 2 179464308 179464308 A C TTN Missense_Mutation p.S18774A 0.30 TCGA-2W-A8YY-01 2 179468770 179468770 C T TTN Missense_Mutation p.R18215H 0.35 TCGA-2W-A8YY-01 2 179474643 179474643 C A TTN Missense_Mutation p.K17169N 0.12 TCGA-2W-A8YY-01 2 17947949 17947949 T G GEN1 Missense_Mutation p.L210R 0.40 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 2 179485026 179485026 C T TTN Missense_Mutation p.A15408T 0.43 TCGA-2W-A8YY-01 2 179498347 179498347 C A TTN Nonsense_Mutation p.E14247* 0.54 TCGA-2W-A8YY-01 2 179500969 179500969 C T TTN Splice_Site p.X13777_splice 0.18 TCGA-2W-A8YY-01 2 179501153 179501153 C A TTN Missense_Mutation p.K13767N 0.42 TCGA-2W-A8YY-01 2 179501469 179501469 C T TTN Missense_Mutation p.G13662E 0.30 TCGA-2W-A8YY-01 2 179523448 179523448 T C TTN Silent p.E12509E 0.39 TCGA-2W-A8YY-01 2 179541978 179541978 T C TTN Missense_Mutation p.K11443R 0.10 TCGA-2W-A8YY-01 2 179574365 179574365 C T TTN Missense_Mutation p.A9561T 0.46 TCGA-2W-A8YY-01 2 179577893 179577893 C A TTN Nonsense_Mutation p.E8990* 0.36 TCGA-2W-A8YY-01 2 179584550 179584550 C A TTN Missense_Mutation p.R7890I 0.33 TCGA-2W-A8YY-01 2 179585754 179585754 T C TTN Silent p.A7664A 0.41 TCGA-2W-A8YY-01 2 179587083 179587083 T G TTN Missense_Mutation p.K7477N 0.29 TCGA-2W-A8YY-01 2 179587645 179587645 C T TTN Silent p.T7327T 0.46 TCGA-2W-A8YY-01 2 179587827 179587827 C T TTN Missense_Mutation p.E7303K 0.41 TCGA-2W-A8YY-01 2 179591948 179591948 C T TTN Missense_Mutation p.R6715K 0.38 TCGA-2W-A8YY-01 2 179594209 179594209 G A TTN Missense_Mutation p.T6225I 0.33 TCGA-2W-A8YY-01 2 179594419 179594419 C T TTN Silent p.A6187A 0.37 TCGA-2W-A8YY-01 2 179594426 179594426 C T TTN Missense_Mutation p.G6185D 0.23 TCGA-2W-A8YY-01 2 179594627 179594627 C A TTN Missense_Mutation p.R6118M 0.33 TCGA-2W-A8YY-01 2 179595906 179595906 G T TTN Missense_Mutation p.A5829D 0.38 TCGA-2W-A8YY-01 2 179596803 179596803 T G TTN Silent p.V5631V 0.37 TCGA-2W-A8YY-01 2 179598481 179598481 C T TTN Missense_Mutation p.G5212E 0.37 TCGA-2W-A8YY-01 2 179612465 179612465 G A TTN Intron 0.33 TCGA-2W-A8YY-01 2 179613242 179613242 C T TTN Intron 0.30 TCGA-2W-A8YY-01 2 179614323 179614323 T - TTN Intron 0.21 TCGA-2W-A8YY-01 2 179635941 179635941 C T TTN Missense_Mutation p.E2705K 0.42 TCGA-2W-A8YY-01 2 179638270 179638270 T C TTN Missense_Mutation p.N2505D 0.30 TCGA-2W-A8YY-01 2 179641595 179641595 T A TTN Missense_Mutation p.T1666S 0.22 TCGA-2W-A8YY-01 2 179644013 179644013 A G TTN Silent p.I1302I 0.49 TCGA-2W-A8YY-01 2 179669328 179669328 G A TTN Silent p.S14S 0.43 TCGA-2W-A8YY-01 2 179732780 179732780 G A CCDC141 Silent p.V849V 0.42 TCGA-2W-A8YY-01 2 179732891 179732891 C T CCDC141 Silent p.E812E 0.24 TCGA-2W-A8YY-01 2 179742843 179742843 C A CCDC141 Nonsense_Mutation p.E583* 0.30 TCGA-2W-A8YY-01 2 179742862 179742862 C T CCDC141 Missense_Mutation p.M576I 0.42 deleterious(0.01) benign(0.062) TCGA-2W-A8YY-01 2 180307731 180307731 G A ZNF385B 3'UTR 0.33 TCGA-2W-A8YY-01 2 180815276 180815276 G A CWC22 Silent p.S701S 0.26 TCGA-2W-A8YY-01 2 180838411 180838411 G T CWC22 Missense_Mutation p.L234I 0.08 tolerated(0.08) benign(0.401) TCGA-2W-A8YY-01 2 18113195 18113195 C T KCNS3 Missense_Mutation p.S307L 0.39 deleterious(0) probably_damaging(0.943) TCGA-2W-A8YY-01 2 18113904 18113904 A G KCNS3 3'UTR 0.11 TCGA-2W-A8YY-01 2 181925532 181925532 C T UBE2E3 Silent p.C173C 0.34 TCGA-2W-A8YY-01 2 182766569 182766569 G A SSFA2 Silent p.T263T 0.15 TCGA-2W-A8YY-01 2 182794444 182794444 G A SSFA2 3'UTR 0.25 TCGA-2W-A8YY-01 2 183640091 183640091 G A DNAJC10 Missense_Mutation p.A772T 0.37 tolerated(0.3) benign(0.184) TCGA-2W-A8YY-01 2 183731105 183731105 T C FRZB Missense_Mutation p.H59R 0.31 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 2 184016352 184016352 G A NUP35 Missense_Mutation p.D172N 0.36 deleterious(0.04) benign(0.391) TCGA-2W-A8YY-01 2 185803232 185803232 C T ZNF804A Missense_Mutation p.P1037S 0.67 tolerated(0.11) probably_damaging(0.992) TCGA-2W-A8YY-01 2 185803861 185803861 C T ZNF804A 3'UTR 0.58 TCGA-2W-A8YY-01 2 186627950 186627950 G A FSIP2 Silent p.A516A 0.42 TCGA-2W-A8YY-01 2 186629234 186629234 G T FSIP2 Missense_Mutation p.E540D 0.28 benign(0.013) TCGA-2W-A8YY-01 2 186653912 186653912 G A FSIP2 Missense_Mutation p.M772I 0.45 benign(0.001) TCGA-2W-A8YY-01 2 186654208 186654208 T C FSIP2 Missense_Mutation p.L871S 0.42 benign(0.26) TCGA-2W-A8YY-01 2 186654781 186654781 G A FSIP2 Missense_Mutation p.R1062K 0.17 probably_damaging(0.99) TCGA-2W-A8YY-01 2 186656240 186656240 T C FSIP2 Silent p.S1548S 0.29 TCGA-2W-A8YY-01 2 186659958 186659958 G A FSIP2 Missense_Mutation p.E2788K 0.09 possibly_damaging(0.631) TCGA-2W-A8YY-01 2 186661467 186661467 G A FSIP2 Missense_Mutation p.V3291I 0.33 benign(0.003) TCGA-2W-A8YY-01 2 187373998 187373998 A G ZC3H15 3'UTR 0.22 TCGA-2W-A8YY-01 2 187543301 187543301 C T ITGAV 3'UTR 0.14 TCGA-2W-A8YY-01 2 187618681 187618681 G A FAM171B Missense_Mutation p.R306Q 0.22 tolerated(0.13) benign(0.001) TCGA-2W-A8YY-01 2 18767551 18767551 T C NT5C1B Missense_Mutation p.D136G 0.54 deleterious_low_confidence(0.03) benign(0.02) TCGA-2W-A8YY-01 2 188208046 188208046 T G CALCRL 3'UTR 0.54 TCGA-2W-A8YY-01 2 188361620 188361620 T - TFPI Frame_Shift_Del p.M103Cfs*11 0.27 TCGA-2W-A8YY-01 2 188361689 188361689 C T TFPI Missense_Mutation p.E80K 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 189870114 189870114 A G COL3A1 Silent p.G990G 0.32 TCGA-2W-A8YY-01 2 189904063 189904063 C T COL5A2 Missense_Mutation p.G1287D 0.28 unknown(0) TCGA-2W-A8YY-01 2 190437675 190437675 G A SLC40A1 Missense_Mutation p.S95L 0.42 deleterious(0.04) possibly_damaging(0.686) TCGA-2W-A8YY-01 2 190532545 190532545 G A ASNSD1 Missense_Mutation p.R507H 0.33 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 2 190584522 190584522 G A ANKAR Missense_Mutation p.D817N 0.52 tolerated(0.46) benign(0.003) TCGA-2W-A8YY-01 2 190660538 190660538 A G PMS1 Missense_Mutation p.E59G 0.35 tolerated(0.09) benign(0.063) TCGA-2W-A8YY-01 2 191065761 191065761 C T C2orf88 3'UTR 0.40 TCGA-2W-A8YY-01 2 191066751 191066751 G T C2orf88 3'UTR 0.48 TCGA-2W-A8YY-01 2 191184532 191184532 C T HIBCH 5'UTR 0.42 TCGA-2W-A8YY-01 2 191224931 191224931 G A INPP1 Missense_Mutation p.E35K 0.15 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 2 191535098 191535098 C T NAB1 Missense_Mutation p.A289V 0.31 deleterious(0.05) possibly_damaging(0.674) TCGA-2W-A8YY-01 2 191557400 191557400 C T NAB1 3'UTR 0.46 TCGA-2W-A8YY-01 2 191840470 191840470 A G STAT1 Intron 0.50 TCGA-2W-A8YY-01 2 191865831 191865831 C A STAT1 Missense_Mutation p.S144I 0.28 tolerated(0.18) benign(0.041) TCGA-2W-A8YY-01 2 191873735 191873735 T C STAT1 Missense_Mutation p.N76S 0.14 tolerated(0.13) benign(0.173) TCGA-2W-A8YY-01 2 192255132 192255132 C T MYO1B Silent p.Y632Y 0.30 TCGA-2W-A8YY-01 2 1926644 1926644 G A MYT1L Silent p.Y299Y 0.37 TCGA-2W-A8YY-01 2 193059126 193059126 G - TMEFF2 Frame_Shift_Del p.P42Lfs*4 0.29 TCGA-2W-A8YY-01 2 193059231 193059231 G A TMEFF2 Missense_Mutation p.P7L 0.34 deleterious_low_confidence(0) benign(0.003) TCGA-2W-A8YY-01 2 1946871 1946871 C T MYT1L Missense_Mutation p.E130K 0.38 tolerated(0.3) unknown(0) TCGA-2W-A8YY-01 2 19553042 19553042 G A OSR1 Silent p.F175F 0.28 TCGA-2W-A8YY-01 2 19553222 19553222 C T OSR1 Silent p.P115P 0.30 TCGA-2W-A8YY-01 2 196544975 196544975 G A SLC39A10 Missense_Mutation p.R70H 0.32 tolerated(0.07) benign(0.015) TCGA-2W-A8YY-01 2 196573567 196573567 G T SLC39A10 Missense_Mutation p.R525I 0.50 deleterious(0.01) possibly_damaging(0.877) TCGA-2W-A8YY-01 2 196600326 196600326 G T SLC39A10 3'UTR 0.26 TCGA-2W-A8YY-01 2 196600951 196600951 C A SLC39A10 3'UTR 0.23 TCGA-2W-A8YY-01 2 196605510 196605510 G T DNAH7 Missense_Mutation p.L3950I 0.30 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 2 196664042 196664042 A C DNAH7 Missense_Mutation p.L3444R 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 196673418 196673418 T C DNAH7 Silent p.V3357V 0.46 TCGA-2W-A8YY-01 2 196729067 196729067 G A DNAH7 Missense_Mutation p.R2438C 0.29 deleterious(0.03) probably_damaging(0.992) TCGA-2W-A8YY-01 2 196749421 196749421 C T DNAH7 Missense_Mutation p.R1884Q 0.42 tolerated(0.48) benign(0) TCGA-2W-A8YY-01 2 196825400 196825400 T C DNAH7 Silent p.K825K 0.45 TCGA-2W-A8YY-01 2 196912082 196912082 A G DNAH7 Missense_Mutation p.V131A 0.10 tolerated(0.09) benign(0.002) TCGA-2W-A8YY-01 2 197028109 197028109 T G STK17B 5'UTR 0.36 TCGA-2W-A8YY-01 2 197184487 197184487 C A HECW2 Missense_Mutation p.S376I 0.61 deleterious_low_confidence(0.03) benign(0.014) TCGA-2W-A8YY-01 2 197297911 197297911 G T HECW2 Missense_Mutation p.F79L 0.44 tolerated(0.63) benign(0.03) TCGA-2W-A8YY-01 2 197504378 197504378 G A CCDC150 5'UTR 0.39 TCGA-2W-A8YY-01 2 197531484 197531484 T C CCDC150 Silent p.S268S 0.31 TCGA-2W-A8YY-01 2 197637796 197637796 T C GTF3C3 Missense_Mutation p.D638G 0.12 deleterious(0.03) benign(0.021) TCGA-2W-A8YY-01 2 197645239 197645239 T C GTF3C3 Intron 0.29 TCGA-2W-A8YY-01 2 197711766 197711766 G T PGAP1 Missense_Mutation p.S704Y 0.12 tolerated(0.23) benign(0.281) TCGA-2W-A8YY-01 2 197964563 197964563 T C ANKRD44 Missense_Mutation p.I359M 0.38 tolerated(0.34) possibly_damaging(0.642) TCGA-2W-A8YY-01 2 197990647 197990647 T C ANKRD44 Missense_Mutation p.I126V 0.19 tolerated(0.05) possibly_damaging(0.538) TCGA-2W-A8YY-01 2 198338582 198338582 T C COQ10B Silent p.C217C 0.32 TCGA-2W-A8YY-01 2 198436717 198436717 G A RFTN2 3'UTR 0.33 TCGA-2W-A8YY-01 2 198571054 198571054 G T MARS2 Missense_Mutation p.G309C 0.29 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 2 198571532 198571532 G A MARS2 Missense_Mutation p.R468Q 0.34 tolerated(1) benign(0) TCGA-2W-A8YY-01 2 198592932 198592932 A - BOLL 3'UTR 0.32 TCGA-2W-A8YY-01 2 198592944 198592944 A T BOLL 3'UTR 0.42 TCGA-2W-A8YY-01 2 198649395 198649395 G A BOLL Intron 0.50 TCGA-2W-A8YY-01 2 198948995 198948995 G T PLCL1 Missense_Mutation p.D252Y 0.21 deleterious(0) possibly_damaging(0.864) TCGA-2W-A8YY-01 2 198949005 198949005 G A PLCL1 Missense_Mutation p.G255E 0.55 tolerated(0.25) benign(0.313) TCGA-2W-A8YY-01 2 198950955 198950955 A G PLCL1 Missense_Mutation p.Q905R 0.29 tolerated(0.08) possibly_damaging(0.821) TCGA-2W-A8YY-01 2 200134387 200134387 C T SATB2 3'UTR 0.27 TCGA-2W-A8YY-01 2 200137224 200137224 G A SATB2 Silent p.L638L 0.25 TCGA-2W-A8YY-01 2 200173523 200173523 C T SATB2 Missense_Mutation p.R567H 0.27 deleterious(0.02) benign(0.039) TCGA-2W-A8YY-01 2 200324382 200324382 C T SATB2 5'Flank 0.32 TCGA-2W-A8YY-01 2 201254007 201254007 G A SPATS2L Splice_Site p.X13_splice 0.33 TCGA-2W-A8YY-01 2 201337735 201337735 C A SPATS2L Missense_Mutation p.T414N 0.35 tolerated(0.75) benign(0.077) TCGA-2W-A8YY-01 2 201363666 201363666 C T KCTD18 Missense_Mutation p.A172T 0.26 deleterious(0.03) benign(0.26) TCGA-2W-A8YY-01 2 201478596 201478596 G A AOX1 Silent p.S506S 0.62 TCGA-2W-A8YY-01 2 201656373 201656373 C T AC007163.6 Intron 0.41 TCGA-2W-A8YY-01 2 201687975 201687975 C A BZW1 3'Flank 0.35 TCGA-2W-A8YY-01 2 202002474 202002474 G A CFLAR Intron 0.24 TCGA-2W-A8YY-01 2 202074083 202074083 G T CASP10 Nonsense_Mutation p.E405* 0.23 TCGA-2W-A8YY-01 2 202131326 202131326 G T CASP8 Missense_Mutation p.K98N 0.43 tolerated(0.08) benign(0.012) TCGA-2W-A8YY-01 2 202149917 202149917 C T CASP8 Missense_Mutation p.P453L 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 202245628 202245628 G A TRAK2 Nonsense_Mutation p.R795* 0.34 TCGA-2W-A8YY-01 2 202252431 202252432 - T TRAK2 Frame_Shift_Ins p.L564Hfs*2 0.24 TCGA-2W-A8YY-01 2 202257764 202257764 G A TRAK2 Silent p.H327H 0.31 TCGA-2W-A8YY-01 2 202358523 202358523 G A ALS2CR11 Silent p.S847S 0.41 TCGA-2W-A8YY-01 2 202430556 202430556 G T ALS2CR11 Missense_Mutation p.F291L 0.11 deleterious(0) probably_damaging(0.969) TCGA-2W-A8YY-01 2 202436668 202436668 C T ALS2CR11 Missense_Mutation p.V277M 0.13 tolerated(0.12) benign(0.088) TCGA-2W-A8YY-01 2 202446916 202446916 G A ALS2CR11 Missense_Mutation p.R181W 0.23 tolerated(0.09) probably_damaging(0.996) TCGA-2W-A8YY-01 2 202521070 202521070 C T MPP4 Missense_Mutation p.R384H 0.37 tolerated(0.05) probably_damaging(0.997) TCGA-2W-A8YY-01 2 202593342 202593342 G A ALS2 Missense_Mutation p.R912C 0.53 tolerated(0.1) probably_damaging(0.941) TCGA-2W-A8YY-01 2 202625772 202625772 G A ALS2 Silent p.S315S 0.35 TCGA-2W-A8YY-01 2 202899442 202899442 C T FZD7 Silent p.G24G 0.36 TCGA-2W-A8YY-01 2 202902211 202902211 C T FZD7 3'UTR 0.31 TCGA-2W-A8YY-01 2 202967668 202967668 G A AC079354.1 Splice_Site p.X386_splice 0.34 TCGA-2W-A8YY-01 2 203152410 203152410 C T NOP58 Silent p.S154S 0.40 TCGA-2W-A8YY-01 2 203165016 203165016 G A NOP58 Missense_Mutation p.R443H 0.34 deleterious(0.01) benign(0.041) TCGA-2W-A8YY-01 2 203383699 203383699 G A BMPR2 Missense_Mutation p.R259H 0.55 tolerated(0.09) benign(0.055) TCGA-2W-A8YY-01 2 203653622 203653622 C T ICA1L Missense_Mutation p.A392T 0.30 tolerated(0.33) benign(0.161) TCGA-2W-A8YY-01 2 203684334 203684334 A - ICA1L Intron 0.17 TCGA-2W-A8YY-01 2 203693796 203693796 G A ICA1L Intron 0.42 TCGA-2W-A8YY-01 2 203949272 203949272 C T NBEAL1 Nonsense_Mutation p.R360* 0.36 TCGA-2W-A8YY-01 2 203996789 203996791 CTT - NBEAL1 In_Frame_Del p.L1192del 0.49 TCGA-2W-A8YY-01 2 20402152 20402152 C T SDC1 3'UTR 0.52 TCGA-2W-A8YY-01 2 204034491 204034491 C T NBEAL1 Nonsense_Mutation p.R1978* 0.43 TCGA-2W-A8YY-01 2 204143326 204143326 A G CYP20A1 Missense_Mutation p.N237S 0.38 tolerated(0.32) benign(0.002) TCGA-2W-A8YY-01 2 204260389 204260389 A T ABI2 Missense_Mutation p.S240C 0.45 tolerated(0.05) benign(0.067) TCGA-2W-A8YY-01 2 204292955 204292955 C T ABI2 3'UTR 0.27 TCGA-2W-A8YY-01 2 204293081 204293081 T C ABI2 3'UTR 0.38 TCGA-2W-A8YY-01 2 204304776 204304776 A G RAPH1 Missense_Mutation p.V1046A 0.28 unknown(0) TCGA-2W-A8YY-01 2 204309668 204309668 C T RAPH1 Missense_Mutation p.V567I 0.19 benign(0.007) TCGA-2W-A8YY-01 2 204600034 204600034 A G CD28 3'UTR 0.11 TCGA-2W-A8YY-01 2 204738426 204738426 G A CTLA4 3'UTR 0.43 TCGA-2W-A8YY-01 2 205986568 205986568 C T PARD3B Nonsense_Mutation p.R354* 0.55 TCGA-2W-A8YY-01 2 206562319 206562319 C A NRP2 Missense_Mutation p.S42Y 0.48 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 2 206587398 206587398 C T NRP2 Silent p.Y210Y 0.56 TCGA-2W-A8YY-01 2 206868903 206868903 G A INO80D 3'UTR 0.48 TCGA-2W-A8YY-01 2 206869629 206869629 T C INO80D Silent p.T849T 0.25 TCGA-2W-A8YY-01 2 206882467 206882467 G A INO80D Silent p.C493C 0.36 TCGA-2W-A8YY-01 2 206911314 206911314 G A INO80D Silent p.S329S 0.33 TCGA-2W-A8YY-01 2 207014572 207014572 C T NDUFS1 Missense_Mutation p.M91I 0.38 deleterious(0) possibly_damaging(0.837) TCGA-2W-A8YY-01 2 207041031 207041031 C T GPR1 Missense_Mutation p.R314H 0.38 tolerated(0.25) benign(0.001) TCGA-2W-A8YY-01 2 207175221 207175221 T C ZDBF2 Missense_Mutation p.V1990A 0.24 tolerated(0.59) benign(0.153) TCGA-2W-A8YY-01 2 207426961 207426961 C T ADAM23 Missense_Mutation p.S430L 0.38 deleterious(0) possibly_damaging(0.821) TCGA-2W-A8YY-01 2 207436507 207436507 C T ADAM23 Silent p.S541S 0.43 TCGA-2W-A8YY-01 2 207509258 207509258 G A AC010731.4 RNA 0.39 TCGA-2W-A8YY-01 2 207557903 207557903 C T DYTN Missense_Mutation p.A326T 0.25 tolerated(0.17) benign(0.025) TCGA-2W-A8YY-01 2 207572124 207572124 G T DYTN Silent p.L66L 0.41 TCGA-2W-A8YY-01 2 207583039 207583039 G A DYTN 5'UTR 0.47 TCGA-2W-A8YY-01 2 207635945 207635945 C T FASTKD2 Silent p.V307V 0.29 TCGA-2W-A8YY-01 2 207636643 207636643 G A FASTKD2 Missense_Mutation p.R339K 0.21 tolerated(0.39) benign(0.01) TCGA-2W-A8YY-01 2 20817629 20817629 G T HS1BP3 3'UTR 0.38 TCGA-2W-A8YY-01 2 20818681 20818681 G T HS1BP3 3'UTR 0.41 TCGA-2W-A8YY-01 2 208628493 208628493 C A FZD5 3'UTR 0.38 TCGA-2W-A8YY-01 2 208632990 208632990 C T FZD5 Silent p.A158A 0.40 TCGA-2W-A8YY-01 2 208633040 208633040 C T FZD5 Missense_Mutation p.D142N 0.48 tolerated(0.24) benign(0.079) TCGA-2W-A8YY-01 2 208633361 208633361 C T FZD5 Missense_Mutation p.E35K 0.38 tolerated(0.05) possibly_damaging(0.68) TCGA-2W-A8YY-01 2 20885399 20885399 A C C2orf43 3'UTR 0.39 TCGA-2W-A8YY-01 2 208865762 208865762 C A PLEKHM3 Missense_Mutation p.G201V 0.36 tolerated(0.08) possibly_damaging(0.543) TCGA-2W-A8YY-01 2 20901357 20901357 G A C2orf43 Silent p.D253D 0.40 TCGA-2W-A8YY-01 2 209224707 209224707 G A PIKFYVE 3'Flank 0.43 TCGA-2W-A8YY-01 2 210570329 210570329 A G MAP2 Missense_Mutation p.K1537R 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 2 210574705 210574705 C A MAP2 Silent p.A1600A 0.25 TCGA-2W-A8YY-01 2 210595233 210595233 C T MAP2 3'UTR 0.17 TCGA-2W-A8YY-01 2 210596154 210596154 C T MAP2 3'UTR 0.29 TCGA-2W-A8YY-01 2 210809784 210809784 A G UNC80 Missense_Mutation p.N2288D 0.47 possibly_damaging(0.497) TCGA-2W-A8YY-01 2 210841725 210841725 C A UNC80 Missense_Mutation p.P2888H 0.38 probably_damaging(0.971) TCGA-2W-A8YY-01 2 210887827 210887827 T - KANSL1L Frame_Shift_Del p.K937Rfs*42 0.21 TCGA-2W-A8YY-01 2 211057584 211057584 G A ACADL Silent p.Y381Y 0.40 TCGA-2W-A8YY-01 2 211082712 211082712 G A ACADL Silent p.S116S 0.43 TCGA-2W-A8YY-01 2 211297696 211297696 C A LANCL1 3'UTR 0.39 TCGA-2W-A8YY-01 2 211441165 211441165 C T CPS1 Missense_Mutation p.A117V 0.35 tolerated(0.21) possibly_damaging(0.487) TCGA-2W-A8YY-01 2 211467040 211467040 G A CPS1 Missense_Mutation p.D614N 0.40 tolerated(0.33) possibly_damaging(0.72) TCGA-2W-A8YY-01 2 211532923 211532923 G A CPS1 Missense_Mutation p.G1345D 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 212243253 212243253 C A ERBB4 3'UTR 0.29 TCGA-2W-A8YY-01 2 212243406 212243406 G A ERBB4 3'UTR 0.34 TCGA-2W-A8YY-01 2 21225135 21225135 C A APOB Nonsense_Mutation p.E4387* 0.56 TCGA-2W-A8YY-01 2 21225146 21225146 G A APOB Missense_Mutation p.A4383V 0.42 benign(0.196) TCGA-2W-A8YY-01 2 212288910 212288910 T C ERBB4 Missense_Mutation p.T946A 0.42 deleterious(0) benign(0.399) TCGA-2W-A8YY-01 2 21230865 21230865 G A APOB Silent p.L2959L 0.40 TCGA-2W-A8YY-01 2 21231072 21231072 A C APOB Missense_Mutation p.F2890V 0.40 benign(0.003) TCGA-2W-A8YY-01 2 212522674 212522674 C T ERBB4 Intron 0.36 TCGA-2W-A8YY-01 2 212615428 212615428 A G ERBB4 Silent p.C186C 0.38 TCGA-2W-A8YY-01 2 212812236 212812236 G A ERBB4 Nonsense_Mutation p.R114* 0.29 TCGA-2W-A8YY-01 2 213872771 213872771 G A IKZF2 Silent p.H298H 0.31 TCGA-2W-A8YY-01 2 213914511 213914511 G A IKZF2 Missense_Mutation p.P167L 0.11 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 214229076 214229076 G T SPAG16 Intron 0.36 TCGA-2W-A8YY-01 2 214878778 214878778 C T SPAG16 Silent p.L502L 0.11 TCGA-2W-A8YY-01 2 215278958 215278958 T C VWC2L Missense_Mutation p.V14A 0.34 tolerated_low_confidence(0.26) benign(0.001) TCGA-2W-A8YY-01 2 215645766 215645766 C A BARD1 Missense_Mutation p.V278F 0.47 tolerated(0.18) benign(0.033) TCGA-2W-A8YY-01 2 215833487 215833487 C T ABCA12 Missense_Mutation p.R1912H 0.40 tolerated(0.12) benign(0.009) TCGA-2W-A8YY-01 2 215876241 215876241 T C ABCA12 Missense_Mutation p.N752D 0.34 tolerated(0.14) benign(0.195) TCGA-2W-A8YY-01 2 216197200 216197200 G A ATIC Missense_Mutation p.A262T 0.55 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 2 216200776 216200776 G A ATIC Missense_Mutation p.A343T 0.17 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 2 216214324 216214324 C T ATIC Silent p.C575C 0.10 TCGA-2W-A8YY-01 2 216248184 216248184 C T FN1 Missense_Mutation p.M1639I 0.39 deleterious(0.04) benign(0.437) TCGA-2W-A8YY-01 2 216249663 216249663 G A FN1 Missense_Mutation p.A1550V 0.17 tolerated(1) benign(0.046) TCGA-2W-A8YY-01 2 216256439 216256439 G T FN1 Missense_Mutation p.L1390M 0.18 tolerated(0.13) possibly_damaging(0.893) TCGA-2W-A8YY-01 2 216271914 216271914 C T FN1 Silent p.V883V 0.11 TCGA-2W-A8YY-01 2 216930081 216930081 A G PECR Silent p.A126A 0.14 TCGA-2W-A8YY-01 2 216946412 216946412 C T PECR Missense_Mutation p.G18D 0.09 tolerated(0.39) benign(0.008) TCGA-2W-A8YY-01 2 216960829 216960829 G A TMEM169 Missense_Mutation p.R48H 0.38 deleterious(0) probably_damaging(0.935) TCGA-2W-A8YY-01 2 216974086 216974086 T C XRCC5 5'UTR 0.32 TCGA-2W-A8YY-01 2 217070106 217070106 G A XRCC5 3'UTR 0.24 TCGA-2W-A8YY-01 2 217123404 217123404 G A MARCH4 3'UTR 0.39 TCGA-2W-A8YY-01 2 217148302 217148302 G A MARCH4 Silent p.L223L 0.28 TCGA-2W-A8YY-01 2 217234494 217234494 G A MARCH4 Missense_Mutation p.R164C 0.11 deleterious(0) benign(0.159) TCGA-2W-A8YY-01 2 217279575 217279575 A G SMARCAL1 Missense_Mutation p.K50E 0.48 tolerated_low_confidence(0.12) benign(0.118) TCGA-2W-A8YY-01 2 218682633 218682633 C T TNS1 Silent p.P1370P 0.32 TCGA-2W-A8YY-01 2 218686555 218686555 G A TNS1 Silent p.G1056G 0.39 TCGA-2W-A8YY-01 2 218755766 218755766 G A TNS1 Missense_Mutation p.A137V 0.29 deleterious(0) possibly_damaging(0.662) TCGA-2W-A8YY-01 2 218924586 218924586 G A CXCR2P1 RNA 0.29 TCGA-2W-A8YY-01 2 218925477 218925477 G A CXCR2P1 RNA 0.13 TCGA-2W-A8YY-01 2 219029085 219029085 C T CXCR1 Missense_Mutation p.G284S 0.52 tolerated(0.1) benign(0.016) TCGA-2W-A8YY-01 2 219029646 219029646 C T CXCR1 Missense_Mutation p.A97T 0.12 tolerated(0.38) benign(0.037) TCGA-2W-A8YY-01 2 219131701 219131701 C T AAMP Missense_Mutation p.D135N 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 2 219134145 219134145 C T AAMP Silent p.E78E 0.51 TCGA-2W-A8YY-01 2 219232199 219232199 G A C2orf62 Nonsense_Mutation p.W293* 0.40 TCGA-2W-A8YY-01 2 219269414 219269415 - T CTDSP1 3'UTR 0.32 TCGA-2W-A8YY-01 2 219270659 219270659 C T CTDSP1 3'UTR 0.33 TCGA-2W-A8YY-01 2 219297659 219297659 C T VIL1 Silent p.R495R 0.11 TCGA-2W-A8YY-01 2 219362503 219362503 T - USP37 Frame_Shift_Del p.N412Mfs*22 0.38 TCGA-2W-A8YY-01 2 219362578 219362578 C T USP37 Missense_Mutation p.R387H 0.35 tolerated(0.56) probably_damaging(0.995) TCGA-2W-A8YY-01 2 219528592 219528592 G A RNF25 3'UTR 0.44 TCGA-2W-A8YY-01 2 219538382 219538382 G A STK36 Missense_Mutation p.R40H 0.09 deleterious(0.01) possibly_damaging(0.608) TCGA-2W-A8YY-01 2 219557980 219557980 A G STK36 Silent p.A687A 0.28 TCGA-2W-A8YY-01 2 219562686 219562686 G A STK36 Missense_Mutation p.D1007N 0.17 tolerated(0.63) benign(0.006) TCGA-2W-A8YY-01 2 219618342 219618342 G T TTLL4 Missense_Mutation p.K1098N 0.43 tolerated(0.09) probably_damaging(0.954) TCGA-2W-A8YY-01 2 219677109 219677109 A G CYP27A1 Missense_Mutation p.D204G 0.34 tolerated(0.06) benign(0.182) TCGA-2W-A8YY-01 2 219754933 219754933 A G WNT10A Missense_Mutation p.S202G 0.34 tolerated(0.4) benign(0.096) TCGA-2W-A8YY-01 2 219826616 219826616 C T CDK5R2 3'UTR 0.24 TCGA-2W-A8YY-01 2 219893035 219893035 C T CCDC108 Missense_Mutation p.R580H 0.22 tolerated(0.05) benign(0.249) TCGA-2W-A8YY-01 2 219894231 219894231 G A CCDC108 Missense_Mutation p.A515V 0.31 tolerated(0.09) benign(0.193) TCGA-2W-A8YY-01 2 219920418 219920418 G A IHH Silent p.R249R 0.35 TCGA-2W-A8YY-01 2 220022258 220022258 C T NHEJ1 Missense_Mutation p.R109Q 0.36 deleterious(0.04) possibly_damaging(0.824) TCGA-2W-A8YY-01 2 220027028 220027028 C T SLC23A3 Silent p.T518T 0.48 TCGA-2W-A8YY-01 2 220032650 220032650 A G SLC23A3 Splice_Site p.X313_splice 0.28 TCGA-2W-A8YY-01 2 220073268 220073268 C T ZFAND2B Intron 0.36 TCGA-2W-A8YY-01 2 220073764 220073764 G A ZFAND2B Missense_Mutation p.R241Q 0.39 tolerated(0.63) benign(0) TCGA-2W-A8YY-01 2 220077985 220077985 C T ABCB6 Missense_Mutation p.V595M 0.37 deleterious(0.01) probably_damaging(0.957) TCGA-2W-A8YY-01 2 220089071 220089071 C T ATG9A Missense_Mutation p.R341H 0.50 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 2 220150672 220150672 G A DNAJB2 3'UTR 0.39 TCGA-2W-A8YY-01 2 220168485 220168485 G A PTPRN Missense_Mutation p.R117C 0.36 deleterious(0.02) possibly_damaging(0.677) TCGA-2W-A8YY-01 2 220251403 220251403 T C DNPEP Missense_Mutation p.D106G 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 220353596 220353596 C T SPEG Missense_Mutation p.T2708M 0.24 probably_damaging(0.998) TCGA-2W-A8YY-01 2 220354339 220354339 G A SPEG Missense_Mutation p.V2867I 0.35 benign(0.002) TCGA-2W-A8YY-01 2 220371072 220371072 G A GMPPA Missense_Mutation p.D364N 0.46 tolerated(0.48) possibly_damaging(0.775) TCGA-2W-A8YY-01 2 220412623 220412623 G A TMEM198 Missense_Mutation p.A188T 0.33 tolerated(0.13) possibly_damaging(0.798) TCGA-2W-A8YY-01 2 220432811 220432811 G A OBSL1 Silent p.G416G 0.08 TCGA-2W-A8YY-01 2 220466763 220466763 G A STK11IP Silent p.Q143Q 0.37 TCGA-2W-A8YY-01 2 220472961 220472961 C A STK11IP Missense_Mutation p.P482H 0.45 tolerated(0.09) benign(0.35) TCGA-2W-A8YY-01 2 220501074 220501074 G A SLC4A3 Missense_Mutation p.A775T 0.11 deleterious(0) benign(0.237) TCGA-2W-A8YY-01 2 220502312 220502312 G T SLC4A3 Nonsense_Mutation p.E876* 0.29 TCGA-2W-A8YY-01 2 220502413 220502413 C - SLC4A3 Frame_Shift_Del p.S912Afs*22 0.44 TCGA-2W-A8YY-01 2 222290122 222290122 C T EPHA4 3'UTR 0.44 TCGA-2W-A8YY-01 2 222429082 222429083 - T EPHA4 Frame_Shift_Ins p.N64Kfs*19 0.28 TCGA-2W-A8YY-01 2 223065536 223065536 C A PAX3 3'UTR 0.38 TCGA-2W-A8YY-01 2 223096936 223096936 T C PAX3 Missense_Mutation p.K218R 0.38 deleterious(0.03) probably_damaging(0.997) TCGA-2W-A8YY-01 2 223169696 223169696 G T CCDC140 3'UTR 0.11 TCGA-2W-A8YY-01 2 223918766 223918766 G A KCNE4 3'UTR 0.31 TCGA-2W-A8YY-01 2 224743246 224743246 C A WDFY1 3'UTR 0.33 TCGA-2W-A8YY-01 2 224743409 224743409 C T WDFY1 Silent p.A404A 0.18 TCGA-2W-A8YY-01 2 224828472 224828472 G A MRPL44 Splice_Site p.X217_splice 0.31 TCGA-2W-A8YY-01 2 225244749 225244749 G A FAM124B Silent p.S303S 0.44 TCGA-2W-A8YY-01 2 225721651 225721651 A C DOCK10 Missense_Mutation p.F578L 0.38 deleterious(0.02) benign(0.314) TCGA-2W-A8YY-01 2 226447305 226447305 C T NYAP2 Missense_Mutation p.A391V 0.39 tolerated(0.35) benign(0.034) TCGA-2W-A8YY-01 2 226447359 226447359 C T NYAP2 Missense_Mutation p.A409V 0.32 tolerated(0.44) benign(0.001) TCGA-2W-A8YY-01 2 226491743 226491743 G T NYAP2 Missense_Mutation p.A577S 0.38 tolerated_low_confidence(0.46) benign(0.163) TCGA-2W-A8YY-01 2 227600321 227600321 G T IRS1 3'UTR 0.53 TCGA-2W-A8YY-01 2 227660946 227660946 G T IRS1 Missense_Mutation p.L837M 0.28 tolerated(0.25) benign(0.347) TCGA-2W-A8YY-01 2 227662223 227662223 C T IRS1 Missense_Mutation p.R411Q 0.45 deleterious(0.04) probably_damaging(0.978) TCGA-2W-A8YY-01 2 227662475 227662475 C T IRS1 Missense_Mutation p.R327H 0.33 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 2 227662911 227662911 T C IRS1 Missense_Mutation p.I182V 0.60 tolerated(1) benign(0.018) TCGA-2W-A8YY-01 2 227663069 227663069 G A IRS1 Missense_Mutation p.A129V 0.50 tolerated(0.62) benign(0.026) TCGA-2W-A8YY-01 2 227732003 227732003 G A RHBDD1 Missense_Mutation p.E179K 0.37 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 227871972 227871972 G A COL4A4 3'UTR 0.16 TCGA-2W-A8YY-01 2 227967565 227967565 C A COL4A4 Splice_Site p.X291_splice 0.30 TCGA-2W-A8YY-01 2 227979359 227979359 G A COL4A4 Silent p.A181A 0.36 TCGA-2W-A8YY-01 2 228420271 228420271 T - AGFG1 3'Flank 0.20 TCGA-2W-A8YY-01 2 228421305 228421305 A G AGFG1 3'Flank 0.38 TCGA-2W-A8YY-01 2 228421351 228421351 T G AGFG1 3'Flank 0.41 TCGA-2W-A8YY-01 2 228565659 228565659 G T SLC19A3 Intron 0.56 TCGA-2W-A8YY-01 2 228881449 228881449 T C SPHKAP Missense_Mutation p.D1374G 0.31 tolerated(0.27) benign(0.008) TCGA-2W-A8YY-01 2 230096676 230096676 C T PID1 Intron 0.27 TCGA-2W-A8YY-01 2 230450741 230450741 C A DNER Splice_Site p.X227_splice 0.26 TCGA-2W-A8YY-01 2 230643288 230643288 G A TRIP12 Missense_Mutation p.T1667I 0.17 tolerated(0.18) benign(0.129) TCGA-2W-A8YY-01 2 230656711 230656711 G A TRIP12 Missense_Mutation p.P1354L 0.39 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 230661369 230661369 T G TRIP12 Missense_Mutation p.K1177Q 0.33 tolerated(0.45) benign(0.116) TCGA-2W-A8YY-01 2 230673007 230673007 C T TRIP12 Missense_Mutation p.R719Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 2 230693987 230693987 C T TRIP12 Missense_Mutation p.G410S 0.39 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 2 230861517 230861517 T C FBXO36 Silent p.L86L 0.11 TCGA-2W-A8YY-01 2 230900321 230900321 G T SLC16A14 3'UTR 0.67 TCGA-2W-A8YY-01 2 230900725 230900725 C T SLC16A14 3'UTR 0.44 TCGA-2W-A8YY-01 2 230910773 230910773 A G SLC16A14 Missense_Mutation p.S357P 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 230933292 230933292 C T SLC16A14 5'UTR 0.38 TCGA-2W-A8YY-01 2 231108503 231108503 G A SP140 Missense_Mutation p.S183N 0.35 tolerated(0.16) benign(0.344) TCGA-2W-A8YY-01 2 231222577 231222577 G T SP140L Missense_Mutation p.K55N 0.38 tolerated(0.12) benign(0.092) TCGA-2W-A8YY-01 2 231328850 231328850 C T SP100 Missense_Mutation p.P376S 0.35 tolerated(0.59) possibly_damaging(0.803) TCGA-2W-A8YY-01 2 231371088 231371088 A G SP100 Silent p.G647G 0.19 TCGA-2W-A8YY-01 2 231379830 231379830 C T SP100 Intron 0.31 TCGA-2W-A8YY-01 2 231404006 231404006 G A SP100 Missense_Mutation p.V707M 0.49 deleterious(0.04) possibly_damaging(0.781) TCGA-2W-A8YY-01 2 231624706 231624706 C T CAB39 5'UTR 0.36 TCGA-2W-A8YY-01 2 231685478 231685478 C T CAB39 3'UTR 0.33 TCGA-2W-A8YY-01 2 231742192 231742192 C T ITM2C Silent p.A213A 0.11 TCGA-2W-A8YY-01 2 231865249 231865249 A G SPATA3 Missense_Mutation p.Y157C 0.29 deleterious(0) possibly_damaging(0.878) TCGA-2W-A8YY-01 2 232209779 232209779 C T ARMC9 Silent p.G657G 0.42 TCGA-2W-A8YY-01 2 232225523 232225523 G A MIR4777 5'Flank 0.41 TCGA-2W-A8YY-01 2 232319769 232319769 G A NCL 3'UTR 0.50 TCGA-2W-A8YY-01 2 232389927 232389927 C T NMUR1 Missense_Mutation p.A370T 0.16 tolerated(0.1) benign(0.016) TCGA-2W-A8YY-01 2 232393291 232393291 G T NMUR1 Silent p.A147A 0.43 TCGA-2W-A8YY-01 2 232458633 232458633 C T C2orf57 Missense_Mutation p.S324L 0.40 deleterious(0.03) benign(0.365) TCGA-2W-A8YY-01 2 232573310 232573310 C T PTMA 5'UTR 0.46 TCGA-2W-A8YY-01 2 2328223 2328223 C T MYT1L Intron 0.40 TCGA-2W-A8YY-01 2 233194658 233194658 C T DIS3L2 Silent p.C625C 0.35 TCGA-2W-A8YY-01 2 233201383 233201383 C T DIS3L2 3'UTR 0.38 TCGA-2W-A8YY-01 2 233246568 233246568 C T ALPP 3'UTR 0.54 TCGA-2W-A8YY-01 2 233272062 233272062 C A ALPPL2 Missense_Mutation p.P84H 0.21 deleterious(0.01) possibly_damaging(0.771) TCGA-2W-A8YY-01 2 233323594 233323594 C T ALPI Missense_Mutation p.A442V 0.34 deleterious(0) possibly_damaging(0.708) TCGA-2W-A8YY-01 2 233348906 233348906 G A ECEL1 Silent p.R404R 0.33 TCGA-2W-A8YY-01 2 233350613 233350613 G T ECEL1 Missense_Mutation p.L251M 0.19 tolerated(0.28) possibly_damaging(0.837) TCGA-2W-A8YY-01 2 233350660 233350660 G A ECEL1 Missense_Mutation p.A235V 0.54 tolerated(1) benign(0.065) TCGA-2W-A8YY-01 2 233350768 233350768 C T ECEL1 Missense_Mutation p.R199Q 0.54 tolerated(0.32) possibly_damaging(0.45) TCGA-2W-A8YY-01 2 233498702 233498702 G T EFHD1 Missense_Mutation p.E96D 0.40 deleterious(0.01) possibly_damaging(0.856) TCGA-2W-A8YY-01 2 233527635 233527635 C T EFHD1 Silent p.F142F 0.32 TCGA-2W-A8YY-01 2 233722726 233722726 C T GIGYF2 3'UTR 0.56 TCGA-2W-A8YY-01 2 233785039 233785039 G A NGEF Silent p.S261S 0.45 TCGA-2W-A8YY-01 2 233898872 233898872 G A NEU2 Missense_Mutation p.R83Q 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 233899107 233899107 G A NEU2 Silent p.P161P 0.35 TCGA-2W-A8YY-01 2 233899245 233899245 G A NEU2 Silent p.A207A 0.39 TCGA-2W-A8YY-01 2 233899450 233899450 G A NEU2 Missense_Mutation p.V276I 0.23 tolerated(0.62) benign(0.014) TCGA-2W-A8YY-01 2 234072985 234072985 C T INPP5D Silent p.I478I 0.18 TCGA-2W-A8YY-01 2 234078749 234078749 A G INPP5D Missense_Mutation p.H565R 0.49 tolerated(0.84) benign(0.234) TCGA-2W-A8YY-01 2 234079791 234079791 C T INPP5D Missense_Mutation p.A649V 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 2 234112926 234112926 C T INPP5D Missense_Mutation p.R1032W 0.36 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 2 234115664 234115664 C T INPP5D 3'UTR 0.50 TCGA-2W-A8YY-01 2 234184580 234184580 A G ATG16L1 Intron 0.41 TCGA-2W-A8YY-01 2 234203846 234203846 C T ATG16L1 3'UTR 0.38 TCGA-2W-A8YY-01 2 234204042 234204042 T G ATG16L1 3'UTR 0.31 TCGA-2W-A8YY-01 2 234237244 234237244 C T SAG Silent p.V211V 0.51 TCGA-2W-A8YY-01 2 234345082 234345082 G A DGKD Missense_Mutation p.A272T 0.36 tolerated(0.13) benign(0.26) TCGA-2W-A8YY-01 2 234367038 234367038 G A DGKD Missense_Mutation p.A897T 0.20 tolerated(0.05) possibly_damaging(0.745) TCGA-2W-A8YY-01 2 234368441 234368441 C T DGKD Silent p.G911G 0.35 TCGA-2W-A8YY-01 2 234371019 234371019 C T DGKD Missense_Mutation p.R1003W 0.41 deleterious(0.01) possibly_damaging(0.462) TCGA-2W-A8YY-01 2 234421251 234421251 T C USP40 Missense_Mutation p.R812G 0.38 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 2 234526971 234526971 A T UGT1A8 Missense_Mutation p.R206S 0.08 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 2 234581298 234581298 A G UGT1A9 Missense_Mutation p.T240A 0.08 deleterious(0.02) probably_damaging(0.967) TCGA-2W-A8YY-01 2 234601716 234601716 C T UGT1A6 Silent p.G22G 0.47 TCGA-2W-A8YY-01 2 234621956 234621956 C A UGT1A5 Missense_Mutation p.L107M 0.44 tolerated(0.12) possibly_damaging(0.612) TCGA-2W-A8YY-01 2 234652345 234652345 G A UGT1A10 Intron 0.11 TCGA-2W-A8YY-01 2 234669446 234669446 C A UGT1A8 Intron 0.48 TCGA-2W-A8YY-01 2 234676989 234676989 G A UGT1A10 Missense_Mutation p.R400H 0.34 tolerated(0.13) probably_damaging(1) TCGA-2W-A8YY-01 2 234678282 234678282 G A UGT1A10 Intron 0.42 TCGA-2W-A8YY-01 2 234754419 234754419 G A HJURP Silent p.Y150Y 0.36 TCGA-2W-A8YY-01 2 234775652 234775652 G A MSL3P1 RNA 0.39 TCGA-2W-A8YY-01 2 234775975 234775975 T - MSL3P1 RNA 0.38 TCGA-2W-A8YY-01 2 234856112 234856112 C A TRPM8 Intron 0.28 TCGA-2W-A8YY-01 2 234879046 234879046 C A TRPM8 Silent p.V777V 0.44 TCGA-2W-A8YY-01 2 234888838 234888838 G A TRPM8 Missense_Mutation p.V788I 0.75 tolerated(0.34) benign(0) TCGA-2W-A8YY-01 2 234890435 234890435 A C TRPM8 Missense_Mutation p.K822T 0.33 tolerated(0.16) benign(0.032) TCGA-2W-A8YY-01 2 234967570 234967570 G A SPP2 Missense_Mutation p.A101T 0.49 tolerated(0.77) benign(0.017) TCGA-2W-A8YY-01 2 235401837 235401837 G T ARL4C 3'UTR 0.35 TCGA-2W-A8YY-01 2 235951368 235951368 C T SH3BP4 Missense_Mutation p.P652L 0.37 tolerated(0.23) benign(0.004) TCGA-2W-A8YY-01 2 236817467 236817467 C T AGAP1 Missense_Mutation p.T414M 0.32 deleterious(0.05) probably_damaging(0.99) TCGA-2W-A8YY-01 2 236957795 236957795 C T AGAP1 Nonsense_Mutation p.R662* 0.39 TCGA-2W-A8YY-01 2 237033155 237033155 A G AGAP1 3'UTR 0.35 TCGA-2W-A8YY-01 2 237308122 237308122 C T IQCA1 Missense_Mutation p.E382K 0.52 tolerated(0.2) benign(0.097) TCGA-2W-A8YY-01 2 23785183 23785183 C T KLHL29 Silent p.A39A 0.30 TCGA-2W-A8YY-01 2 23785189 23785189 C T KLHL29 Silent p.G41G 0.47 TCGA-2W-A8YY-01 2 237997256 237997256 C G COPS8 Missense_Mutation p.A53G 0.21 deleterious(0) possibly_damaging(0.773) TCGA-2W-A8YY-01 2 238244934 238244934 T C COL6A3 Missense_Mutation p.K2937E 0.39 unknown(0) TCGA-2W-A8YY-01 2 238249273 238249273 G A COL6A3 Silent p.A2762A 0.23 TCGA-2W-A8YY-01 2 238257020 238257020 C A COL6A3 Missense_Mutation p.R2313I 0.33 unknown(0) TCGA-2W-A8YY-01 2 238265995 238265995 C A COL6A3 Nonsense_Mutation p.E2193* 0.41 TCGA-2W-A8YY-01 2 238273040 238273040 C A COL6A3 Missense_Mutation p.G1957V 0.40 possibly_damaging(0.843) TCGA-2W-A8YY-01 2 238285532 238285532 G C COL6A3 Missense_Mutation p.Q985E 0.36 benign(0.407) TCGA-2W-A8YY-01 2 238289920 238289920 A G COL6A3 Missense_Mutation p.V512A 0.15 probably_damaging(0.932) TCGA-2W-A8YY-01 2 238296515 238296515 C T COL6A3 Missense_Mutation p.R341H 0.43 probably_damaging(0.998) TCGA-2W-A8YY-01 2 238419385 238419385 C T MLPH Silent p.G93G 0.43 TCGA-2W-A8YY-01 2 238434354 238434354 G A MLPH Silent p.P262P 0.17 TCGA-2W-A8YY-01 2 238454220 238454220 G A MLPH Intron 0.36 TCGA-2W-A8YY-01 2 238483584 238483584 G A RAB17 3'UTR 0.32 TCGA-2W-A8YY-01 2 238617258 238617258 G A LRRFIP1 Silent p.E46E 0.30 TCGA-2W-A8YY-01 2 238678435 238678435 G A LRRFIP1 3'Flank 0.27 TCGA-2W-A8YY-01 2 238678442 238678442 C T LRRFIP1 3'Flank 0.29 TCGA-2W-A8YY-01 2 238737912 238737912 G T RBM44 Nonsense_Mutation p.E886* 0.20 TCGA-2W-A8YY-01 2 239010669 239010669 C A ESPNL Missense_Mutation p.H128N 0.33 tolerated(0.3) probably_damaging(0.963) TCGA-2W-A8YY-01 2 239025548 239025548 G A ESPNL Missense_Mutation p.C287Y 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 239037347 239037347 G A ESPNL Splice_Site p.X406_splice 0.23 TCGA-2W-A8YY-01 2 239038772 239038772 A G ESPNL Missense_Mutation p.N473D 0.10 tolerated(0.84) benign(0) TCGA-2W-A8YY-01 2 239049538 239049538 G A KLHL30 Missense_Mutation p.R48H 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 239049678 239049678 C T KLHL30 Missense_Mutation p.R95W 0.52 deleterious(0) probably_damaging(0.946) TCGA-2W-A8YY-01 2 239057657 239057657 G T KLHL30 Missense_Mutation p.S450I 0.32 tolerated(0.13) benign(0.188) TCGA-2W-A8YY-01 2 239093834 239093834 T G ILKAP Missense_Mutation p.K174Q 0.12 deleterious(0.01) probably_damaging(0.965) TCGA-2W-A8YY-01 2 239103160 239103160 A G ILKAP Intron 0.73 TCGA-2W-A8YY-01 2 239140733 239140733 C T AC016757.3 5'Flank 0.25 TCGA-2W-A8YY-01 2 239140895 239140895 G A AC016757.3 5'Flank 0.34 TCGA-2W-A8YY-01 2 239155030 239155030 C T PER2 Missense_Mutation p.E1252K 0.46 tolerated(0.12) benign(0.007) TCGA-2W-A8YY-01 2 239161774 239161774 C T PER2 Missense_Mutation p.A964T 0.46 tolerated(0.12) benign(0.003) TCGA-2W-A8YY-01 2 239161920 239161920 G A PER2 Missense_Mutation p.S915L 0.07 tolerated(0.4) benign(0.058) TCGA-2W-A8YY-01 2 239168681 239168681 T G PER2 Missense_Mutation p.N519T 0.44 tolerated(0.13) benign(0.026) TCGA-2W-A8YY-01 2 239169546 239169546 C T PER2 Missense_Mutation p.G489R 0.34 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 2 23918623 23918623 G A KLHL29 Missense_Mutation p.R558H 0.25 deleterious(0.04) possibly_damaging(0.899) TCGA-2W-A8YY-01 2 239247025 239247025 A G TRAF3IP1 Silent p.S362S 0.36 TCGA-2W-A8YY-01 2 23926059 23926059 C T KLHL29 Silent p.Y703Y 0.42 TCGA-2W-A8YY-01 2 239342198 239342198 G A ASB1 Missense_Mutation p.R18H 0.21 tolerated_low_confidence(0.07) benign(0.323) TCGA-2W-A8YY-01 2 23985135 23985135 C T ATAD2B Missense_Mutation p.R1113Q 0.36 tolerated(0.57) benign(0.002) TCGA-2W-A8YY-01 2 239988421 239988421 G A HDAC4 Silent p.N995N 0.35 TCGA-2W-A8YY-01 2 239990284 239990284 C T HDAC4 Missense_Mutation p.A919T 0.36 deleterious(0) probably_damaging(0.912) TCGA-2W-A8YY-01 2 240016640 240016640 G A HDAC4 Intron 0.41 TCGA-2W-A8YY-01 2 240111550 240111550 C T HDAC4 Silent p.A106A 0.36 TCGA-2W-A8YY-01 2 240969087 240969087 C A OR6B2 Missense_Mutation p.A254S 0.07 tolerated(0.21) possibly_damaging(0.557) TCGA-2W-A8YY-01 2 240981295 240981295 C T PRR21 Missense_Mutation p.A369T 0.31 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-2W-A8YY-01 2 240982298 240982298 C T PRR21 Silent p.T34T 0.32 TCGA-2W-A8YY-01 2 240984793 240984793 C T OR6B3 Missense_Mutation p.G233S 0.31 deleterious(0.03) probably_damaging(0.969) TCGA-2W-A8YY-01 2 240984895 240984895 C T OR6B3 Missense_Mutation p.D199N 0.35 deleterious(0.03) probably_damaging(0.914) TCGA-2W-A8YY-01 2 240985474 240985474 C T OR6B3 Missense_Mutation p.V6I 0.46 tolerated(0.45) benign(0.001) TCGA-2W-A8YY-01 2 241389991 241389991 G A AC110619.2 Intron 0.15 TCGA-2W-A8YY-01 2 241463193 241463193 C T ANKMY1 Intron 0.45 TCGA-2W-A8YY-01 2 241463342 241463342 C T ANKMY1 Missense_Mutation p.D509N 0.19 tolerated(0.07) benign(0.032) TCGA-2W-A8YY-01 2 241513639 241513639 G A RNPEPL1 Missense_Mutation p.D119N 0.32 deleterious(0.03) probably_damaging(0.98) TCGA-2W-A8YY-01 2 241517147 241517147 C T RNPEPL1 Silent p.I441I 0.13 TCGA-2W-A8YY-01 2 241533360 241533360 C T CAPN10 Silent p.V242V 0.32 TCGA-2W-A8YY-01 2 241569884 241569884 C T GPR35 Missense_Mutation p.S203F 0.09 deleterious(0.02) benign(0.055) TCGA-2W-A8YY-01 2 241570628 241570628 C T GPR35 3'Flank 0.49 TCGA-2W-A8YY-01 2 241656590 241656590 C T KIF1A 3'UTR 0.51 TCGA-2W-A8YY-01 2 241656638 241656638 G A KIF1A 3'UTR 0.30 TCGA-2W-A8YY-01 2 241662025 241662025 C T KIF1A Missense_Mutation p.A1505T 0.09 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 2 241662954 241662954 C T KIF1A Missense_Mutation p.R1447Q 0.46 tolerated(0.08) probably_damaging(0.987) TCGA-2W-A8YY-01 2 241662967 241662967 G A KIF1A Missense_Mutation p.R1443C 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 241663448 241663448 C T KIF1A Missense_Mutation p.R1421H 0.35 tolerated(0.15) probably_damaging(0.944) TCGA-2W-A8YY-01 2 241724437 241724437 T C KIF1A Missense_Mutation p.H230R 0.15 tolerated(0.06) benign(0.098) TCGA-2W-A8YY-01 2 241818137 241818137 C T AGXT Missense_Mutation p.R360W 0.09 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 241826545 241826545 A G C2orf54 Missense_Mutation p.I429T 0.32 tolerated(0.31) benign(0.212) TCGA-2W-A8YY-01 2 242062177 242062177 C T PASK Nonsense_Mutation p.W1014* 0.42 TCGA-2W-A8YY-01 2 242063477 242063477 C T PASK Missense_Mutation p.D931N 0.45 deleterious(0.05) benign(0.057) TCGA-2W-A8YY-01 2 242079970 242079970 T G PASK Missense_Mutation p.K132T 0.24 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 242106552 242106552 C T PPP1R7 Intron 0.19 TCGA-2W-A8YY-01 2 242166963 242166963 T C HDLBP 3'UTR 0.18 TCGA-2W-A8YY-01 2 242170212 242170212 G A HDLBP Missense_Mutation p.R1146C 0.41 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 2 242186209 242186209 G A HDLBP Silent p.C636C 0.20 TCGA-2W-A8YY-01 2 242194839 242194839 G A HDLBP Nonsense_Mutation p.R344* 0.37 TCGA-2W-A8YY-01 2 242263652 242263652 C T SEPT2 Missense_Mutation p.S2F 0.46 deleterious_low_confidence(0) benign(0.127) TCGA-2W-A8YY-01 2 242437097 242437097 C T STK25 Silent p.A346A 0.42 TCGA-2W-A8YY-01 2 242501809 242501809 G A BOK Silent p.A89A 0.34 TCGA-2W-A8YY-01 2 242618032 242618032 G A DTYMK Silent p.D121D 0.38 TCGA-2W-A8YY-01 2 242793269 242793269 C T PDCD1 Missense_Mutation p.G270S 0.43 tolerated(0.78) benign(0.001) TCGA-2W-A8YY-01 2 242794854 242794854 C T PDCD1 Missense_Mutation p.G119S 0.28 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 2 242814305 242814305 G A CXXC11 Missense_Mutation p.V200I 0.54 tolerated(0.17) benign(0) TCGA-2W-A8YY-01 2 24406384 24406384 G T FAM228A Nonsense_Mutation p.E91* 0.41 TCGA-2W-A8YY-01 2 24426323 24426323 T C ITSN2 3'UTR 0.50 TCGA-2W-A8YY-01 2 24521637 24521637 C T ITSN2 Missense_Mutation p.R464K 0.24 tolerated(0.18) unknown(0) TCGA-2W-A8YY-01 2 24533532 24533532 G A ITSN2 Missense_Mutation p.P128S 0.12 tolerated(0.26) probably_damaging(0.992) TCGA-2W-A8YY-01 2 24536331 24536331 T A ITSN2 Silent p.I62I 0.41 TCGA-2W-A8YY-01 2 24928051 24928051 C T NCOA1 Missense_Mutation p.P349L 0.38 deleterious(0) probably_damaging(0.961) TCGA-2W-A8YY-01 2 24930574 24930574 C A NCOA1 Missense_Mutation p.D745E 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-2W-A8YY-01 2 24933897 24933897 C T NCOA1 Missense_Mutation p.A839V 0.55 tolerated(0.1) benign(0.016) TCGA-2W-A8YY-01 2 24964690 24964690 G A NCOA1 Missense_Mutation p.R1114Q 0.40 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 2 25022666 25022666 C T CENPO Missense_Mutation p.R57C 0.47 tolerated(0.19) benign(0.001) TCGA-2W-A8YY-01 2 25047329 25047329 C T ADCY3 Missense_Mutation p.R885Q 0.23 deleterious(0) possibly_damaging(0.679) TCGA-2W-A8YY-01 2 25050847 25050847 C T ADCY3 Missense_Mutation p.A786T 0.42 tolerated(0.15) benign(0.002) TCGA-2W-A8YY-01 2 25167907 25167907 G T DNAJC27 3'UTR 0.50 TCGA-2W-A8YY-01 2 25384159 25384159 C T POMC Missense_Mutation p.A199T 0.29 tolerated(0.75) benign(0.026) TCGA-2W-A8YY-01 2 25457179 25457179 G A DNMT3A Missense_Mutation p.A903V 0.55 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 2 25466774 25466774 G A DNMT3A Silent p.I643I 0.11 TCGA-2W-A8YY-01 2 25468901 25468901 G A DNMT3A Missense_Mutation p.R488W 0.34 tolerated(0.06) benign(0.137) TCGA-2W-A8YY-01 2 25523011 25523011 G A DNMT3A Silent p.P58P 0.12 TCGA-2W-A8YY-01 2 25830133 25830133 A G DTNB Silent p.C140C 0.26 TCGA-2W-A8YY-01 2 25861882 25861882 C T DTNB Splice_Site p.X50_splice 0.53 TCGA-2W-A8YY-01 2 26101051 26101051 G A ASXL2 Missense_Mutation p.A14V 0.37 deleterious(0) possibly_damaging(0.906) TCGA-2W-A8YY-01 2 26359569 26359569 C T RAB10 3'UTR 0.42 TCGA-2W-A8YY-01 2 26437359 26437359 G A HADHA Nonsense_Mutation p.R291* 0.29 TCGA-2W-A8YY-01 2 26536428 26536428 G A GPR113 Silent p.T430T 0.19 TCGA-2W-A8YY-01 2 26539916 26539916 C T GPR113 Silent p.A122A 0.46 TCGA-2W-A8YY-01 2 26616309 26616309 T C EPT1 3'UTR 0.25 TCGA-2W-A8YY-01 2 26663387 26663387 T C DRC1 Splice_Site p.X343_splice 0.43 TCGA-2W-A8YY-01 2 26677542 26677542 G T DRC1 Missense_Mutation p.Q649H 0.54 tolerated(0.25) benign(0.357) TCGA-2W-A8YY-01 2 26679369 26679369 G A DRC1 Missense_Mutation p.R736Q 0.48 tolerated(0.55) benign(0.009) TCGA-2W-A8YY-01 2 26682964 26682964 G A OTOF Silent p.L1975L 0.28 TCGA-2W-A8YY-01 2 26686383 26686383 C T OTOF Silent p.T1720T 0.40 TCGA-2W-A8YY-01 2 26724651 26724651 G A OTOF Missense_Mutation p.P246S 0.27 tolerated(0.19) probably_damaging(0.999) TCGA-2W-A8YY-01 2 27015651 27015651 C T CENPA Missense_Mutation p.R80C 0.34 tolerated(0.05) benign(0.221) TCGA-2W-A8YY-01 2 27121371 27121371 C A DPYSL5 Missense_Mutation p.L2I 0.28 tolerated(0.35) benign(0.017) TCGA-2W-A8YY-01 2 27247084 27247084 C T MAPRE3 Missense_Mutation p.R130W 0.18 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 27278901 27278901 C - AGBL5 Frame_Shift_Del p.E424Rfs*44 0.37 TCGA-2W-A8YY-01 2 27280263 27280263 C T AGBL5 Missense_Mutation p.P543L 0.36 tolerated(0.29) benign(0.009) TCGA-2W-A8YY-01 2 27303708 27303708 C T EMILIN1 Silent p.P133P 0.30 TCGA-2W-A8YY-01 2 27306220 27306220 G A EMILIN1 Missense_Mutation p.R594H 0.34 possibly_damaging(0.814) TCGA-2W-A8YY-01 2 27320451 27320451 C A KHK Silent p.I166I 0.53 TCGA-2W-A8YY-01 2 27324254 27324254 G A CGREF1 Missense_Mutation p.A282V 0.35 deleterious(0.04) benign(0.409) TCGA-2W-A8YY-01 2 27353225 27353225 C T ABHD1 Missense_Mutation p.A316V 0.53 tolerated(0.09) possibly_damaging(0.732) TCGA-2W-A8YY-01 2 27355143 27355143 C T PREB Missense_Mutation p.R294Q 0.07 tolerated(0.34) benign(0.001) TCGA-2W-A8YY-01 2 27359870 27359870 G T C2orf53 3'UTR 0.41 TCGA-2W-A8YY-01 2 27427777 27427777 G A SLC5A6 Missense_Mutation p.R253W 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 27436108 27436108 A G ATRAID Missense_Mutation p.T110A 0.50 tolerated(0.12) benign(0.028) TCGA-2W-A8YY-01 2 27445780 27445780 C A CAD Silent p.S228S 0.30 TCGA-2W-A8YY-01 2 27455051 27455051 T C CAD Silent p.C868C 0.47 TCGA-2W-A8YY-01 2 27455492 27455492 G A CAD Missense_Mutation p.G941D 0.29 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 27456559 27456559 C T CAD Silent p.S1094S 0.50 TCGA-2W-A8YY-01 2 27460721 27460721 C T CAD Missense_Mutation p.R1567W 0.38 deleterious(0) possibly_damaging(0.766) TCGA-2W-A8YY-01 2 27550112 27550112 G A GTF3C2 Missense_Mutation p.R817C 0.24 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 2 27558423 27558423 C T GTF3C2 Intron 0.43 TCGA-2W-A8YY-01 2 27599675 27599675 G A SNX17 3'UTR 0.25 TCGA-2W-A8YY-01 2 27600648 27600648 G A ZNF513 Silent p.L464L 0.19 TCGA-2W-A8YY-01 2 27601597 27601597 C T ZNF513 Missense_Mutation p.R179H 0.08 tolerated(0.2) possibly_damaging(0.812) TCGA-2W-A8YY-01 2 27601823 27601823 G A ZNF513 Missense_Mutation p.P104S 0.28 tolerated(0.64) possibly_damaging(0.641) TCGA-2W-A8YY-01 2 27603379 27603379 C T ZNF513 Silent p.K5K 0.31 TCGA-2W-A8YY-01 2 27663287 27663287 G A NRBP1 Missense_Mutation p.A352T 0.45 tolerated(0.3) probably_damaging(0.91) TCGA-2W-A8YY-01 2 27665286 27665286 C T KRTCAP3 Missense_Mutation p.R3C 0.50 tolerated_low_confidence(0.12) benign(0) TCGA-2W-A8YY-01 2 27688722 27688722 C T IFT172 Missense_Mutation p.G574R 0.36 deleterious(0.03) benign(0.028) TCGA-2W-A8YY-01 2 27695097 27695097 G T IFT172 Intron 0.32 TCGA-2W-A8YY-01 2 27717001 27717001 G A FNDC4 Missense_Mutation p.R84W 0.58 deleterious(0) probably_damaging(0.914) TCGA-2W-A8YY-01 2 27800285 27800285 G A C2orf16 Silent p.E282E 0.12 TCGA-2W-A8YY-01 2 27801363 27801363 G T C2orf16 Nonsense_Mutation p.E642* 0.38 TCGA-2W-A8YY-01 2 27821117 27821117 C T ZNF512 Silent p.V91V 0.24 TCGA-2W-A8YY-01 2 28521316 28521316 A G BRE Missense_Mutation p.Y349C 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 28532982 28532982 C A BRE Intron 0.45 TCGA-2W-A8YY-01 2 28634868 28634868 G T FOSL2 Missense_Mutation p.E178D 0.33 tolerated(0.16) benign(0.004) TCGA-2W-A8YY-01 2 28635192 28635192 C T FOSL2 Silent p.S286S 0.43 TCGA-2W-A8YY-01 2 29022154 29022154 G A PPP1CB Silent p.P323P 0.40 TCGA-2W-A8YY-01 2 29023547 29023547 G A PPP1CB 3'UTR 0.37 TCGA-2W-A8YY-01 2 29129425 29129425 G A WDR43 Missense_Mutation p.V155I 0.41 tolerated(0.31) benign(0.002) TCGA-2W-A8YY-01 2 29169570 29169570 C T WDR43 Silent p.D653D 0.47 TCGA-2W-A8YY-01 2 29221082 29221082 G A FAM179A Silent p.P34P 0.41 TCGA-2W-A8YY-01 2 29225570 29225570 G T FAM179A Missense_Mutation p.G199V 0.39 deleterious(0.05) benign(0.181) TCGA-2W-A8YY-01 2 29247186 29247186 T C FAM179A Missense_Mutation p.V600A 0.47 tolerated(0.09) probably_damaging(0.951) TCGA-2W-A8YY-01 2 29286311 29286311 G A C2orf71 3'UTR 0.30 TCGA-2W-A8YY-01 2 29296985 29296985 G A C2orf71 Missense_Mutation p.S48F 0.30 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 2 29375586 29375586 A C CLIP4 Missense_Mutation p.K353Q 0.31 tolerated(0.57) possibly_damaging(0.544) TCGA-2W-A8YY-01 2 29404467 29404467 G A CLIP4 Missense_Mutation p.S609N 0.39 deleterious(0.03) possibly_damaging(0.628) TCGA-2W-A8YY-01 2 29404710 29404710 T C CLIP4 Missense_Mutation p.V690A 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 29415753 29415753 G T ALK 3'UTR 0.64 TCGA-2W-A8YY-01 2 29416598 29416598 G A ALK Missense_Mutation p.A1452V 0.44 tolerated(0.39) benign(0.008) TCGA-2W-A8YY-01 2 30382246 30382246 C T YPEL5 3'UTR 0.37 TCGA-2W-A8YY-01 2 30866676 30866676 T C LCLAT1 3'UTR 0.32 TCGA-2W-A8YY-01 2 30966311 30966311 C A CAPN13 Missense_Mutation p.Q461H 0.36 tolerated(0.09) possibly_damaging(0.744) TCGA-2W-A8YY-01 2 31483440 31483440 C T EHD3 Silent p.F189F 0.44 TCGA-2W-A8YY-01 2 31483683 31483683 C T EHD3 Silent p.L270L 0.29 TCGA-2W-A8YY-01 2 31489563 31489563 C A EHD3 Missense_Mutation p.A534D 0.30 tolerated_low_confidence(0.35) benign(0.106) TCGA-2W-A8YY-01 2 31595257 31595257 G A XDH Missense_Mutation p.P565S 0.41 tolerated(0.32) benign(0.271) TCGA-2W-A8YY-01 2 31754456 31754456 C T AL133247.2 Intron 0.43 TCGA-2W-A8YY-01 2 3196339 3196339 G A TSSC1 Missense_Mutation p.R279C 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-2W-A8YY-01 2 3200774 3200774 C T TSSC1 Silent p.A177A 0.40 TCGA-2W-A8YY-01 2 32117107 32117107 C T MEMO1 Silent p.A178A 0.43 TCGA-2W-A8YY-01 2 32323947 32323947 A G SPAST Silent p.G223G 0.32 TCGA-2W-A8YY-01 2 32380937 32380937 T C SPAST 3'UTR 0.42 TCGA-2W-A8YY-01 2 32476022 32476022 C T NLRC4 Missense_Mutation p.S304N 0.32 tolerated(0.15) benign(0.327) TCGA-2W-A8YY-01 2 32515700 32515700 A G YIPF4 Silent p.P76P 0.37 TCGA-2W-A8YY-01 2 32531508 32531508 A G YIPF4 3'UTR 0.48 TCGA-2W-A8YY-01 2 32660598 32660598 G A BIRC6 Silent p.P1148P 0.39 TCGA-2W-A8YY-01 2 32670699 32670699 G A BIRC6 Missense_Mutation p.D1483N 0.45 benign(0.174) TCGA-2W-A8YY-01 2 32688325 32688325 C T BIRC6 Missense_Mutation p.S1606L 0.35 probably_damaging(0.978) TCGA-2W-A8YY-01 2 32693795 32693795 G A BIRC6 Missense_Mutation p.R2024H 0.46 probably_damaging(0.991) TCGA-2W-A8YY-01 2 32703824 32703824 T C BIRC6 Missense_Mutation p.I2397T 0.41 probably_damaging(0.977) TCGA-2W-A8YY-01 2 32843640 32843640 A G BIRC6 3'UTR 0.15 TCGA-2W-A8YY-01 2 33335783 33335783 G T LTBP1 Missense_Mutation p.R333I 0.46 deleterious(0.02) possibly_damaging(0.653) TCGA-2W-A8YY-01 2 33568024 33568024 T C LTBP1 Missense_Mutation p.C1284R 0.14 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 33624058 33624058 C T LTBP1 3'UTR 0.38 TCGA-2W-A8YY-01 2 33736860 33736860 G A RASGRP3 5'UTR 0.38 TCGA-2W-A8YY-01 2 33745019 33745019 G A RASGRP3 Missense_Mutation p.M58I 0.11 tolerated(0.33) benign(0.001) TCGA-2W-A8YY-01 2 33764181 33764181 G A RASGRP3 Silent p.T394T 0.34 TCGA-2W-A8YY-01 2 33768666 33768666 G A RASGRP3 Missense_Mutation p.D456N 0.37 tolerated(0.6) probably_damaging(0.992) TCGA-2W-A8YY-01 2 3391558 3391558 C T TRAPPC12 Missense_Mutation p.S55L 0.49 deleterious_low_confidence(0) benign(0.422) TCGA-2W-A8YY-01 2 3464035 3464035 C T TRAPPC12 Silent p.A535A 0.33 TCGA-2W-A8YY-01 2 3464065 3464065 C T TRAPPC12 Silent p.G545G 0.50 TCGA-2W-A8YY-01 2 3599864 3599864 C T RNASEH1 Silent p.A93A 0.41 TCGA-2W-A8YY-01 2 36777618 36777618 T C CRIM1 3'UTR 0.31 TCGA-2W-A8YY-01 2 36777813 36777813 T G CRIM1 3'UTR 0.19 TCGA-2W-A8YY-01 2 3691108 3691108 G A COLEC11 Missense_Mutation p.E149K 0.36 tolerated(0.11) probably_damaging(0.999) TCGA-2W-A8YY-01 2 3691463 3691463 G A COLEC11 Missense_Mutation p.A205T 0.46 tolerated(0.36) benign(0.016) TCGA-2W-A8YY-01 2 36956574 36956574 C T VIT Silent p.L20L 0.38 TCGA-2W-A8YY-01 2 37076353 37076353 C T STRN 3'UTR 0.32 TCGA-2W-A8YY-01 2 37247974 37247974 G T HEATR5B Missense_Mutation p.L1287I 0.26 deleterious(0.01) benign(0.009) TCGA-2W-A8YY-01 2 37304090 37304090 C T HEATR5B Silent p.T137T 0.49 TCGA-2W-A8YY-01 2 37334314 37334314 A G EIF2AK2 3'UTR 0.28 TCGA-2W-A8YY-01 2 37341918 37341918 G A EIF2AK2 Nonsense_Mutation p.R445* 0.34 TCGA-2W-A8YY-01 2 37347200 37347200 C T EIF2AK2 Missense_Mutation p.E384K 0.45 tolerated(1) benign(0) TCGA-2W-A8YY-01 2 37415586 37415586 G A SULT6B1 Silent p.C28C 0.30 TCGA-2W-A8YY-01 2 37428967 37428968 - T CEBPZ Frame_Shift_Ins p.K1036Efs*4 0.26 TCGA-2W-A8YY-01 2 37475434 37475434 C T NDUFAF7 Missense_Mutation p.R423C 0.48 tolerated_low_confidence(0.06) benign(0.001) TCGA-2W-A8YY-01 2 37480456 37480456 G A PRKD3 Missense_Mutation p.T846I 0.28 tolerated(0.2) benign(0.129) TCGA-2W-A8YY-01 2 37483976 37483976 G A PRKD3 Missense_Mutation p.L748F 0.33 deleterious(0.02) probably_damaging(0.955) TCGA-2W-A8YY-01 2 37873236 37873236 G A CDC42EP3 Silent p.V165V 0.35 TCGA-2W-A8YY-01 2 38231323 38231323 T C RMDN2 Silent p.C559C 0.33 TCGA-2W-A8YY-01 2 38244411 38244411 G A RMDN2 Intron 0.10 TCGA-2W-A8YY-01 2 38298247 38298247 T C CYP1B1 Missense_Mutation p.D417G 0.31 tolerated(0.13) benign(0.105) TCGA-2W-A8YY-01 2 38302287 38302287 C T CYP1B1 Missense_Mutation p.G82D 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 38796344 38796344 G A HNRNPLL Silent p.I444I 0.24 TCGA-2W-A8YY-01 2 38800352 38800352 C A HNRNPLL Missense_Mutation p.K359N 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 38977172 38977172 G A SRSF7 Nonsense_Mutation p.R65* 0.15 TCGA-2W-A8YY-01 2 39025560 39025560 G A DHX57 Missense_Mutation p.R1348C 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 39029991 39029991 G A DHX57 Nonsense_Mutation p.R1295* 0.37 TCGA-2W-A8YY-01 2 39158337 39158337 T C ARHGEF33 Silent p.P150P 0.10 TCGA-2W-A8YY-01 2 39283902 39283902 T G SOS1 Missense_Mutation p.N151H 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 39499470 39499470 G A MAP4K3 Missense_Mutation p.P643S 0.50 tolerated(0.36) probably_damaging(1) TCGA-2W-A8YY-01 2 42285574 42285574 C T PKDCC 3'UTR 0.33 TCGA-2W-A8YY-01 2 42530260 42530260 G A EML4 Missense_Mutation p.G553D 0.13 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 2 42531658 42531658 G A EML4 Missense_Mutation p.G645D 0.40 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 2 42559357 42559357 A G EML4 3'UTR 0.40 TCGA-2W-A8YY-01 2 42671603 42671603 G A KCNG3 Missense_Mutation p.A261V 0.51 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 2 42836711 42836711 G A MTA3 Missense_Mutation p.A102T 0.28 deleterious(0.03) possibly_damaging(0.786) TCGA-2W-A8YY-01 2 43725978 43725978 G A THADA Silent p.V1246V 0.43 TCGA-2W-A8YY-01 2 43919745 43919745 G A PLEKHH2 Silent p.S93S 0.14 TCGA-2W-A8YY-01 2 43937127 43937127 A G PLEKHH2 Splice_Site p.X656_splice 0.32 TCGA-2W-A8YY-01 2 43995000 43995000 C T PLEKHH2 3'UTR 0.12 TCGA-2W-A8YY-01 2 44037022 44037022 G A DYNC2LI1 3'UTR 0.40 TCGA-2W-A8YY-01 2 44145168 44145168 T G LRPPRC Missense_Mutation p.K1048N 0.20 tolerated(0.59) benign(0.001) TCGA-2W-A8YY-01 2 44428896 44428896 C T PPM1B Silent p.S186S 0.32 TCGA-2W-A8YY-01 2 44445160 44445160 G A PPM1B Missense_Mutation p.R340H 0.53 tolerated(0.18) benign(0.002) TCGA-2W-A8YY-01 2 44457795 44457795 C A PPM1B Missense_Mutation p.L460I 0.16 tolerated_low_confidence(0.12) possibly_damaging(0.522) TCGA-2W-A8YY-01 2 44460501 44460501 A G PPM1B 3'Flank 0.43 TCGA-2W-A8YY-01 2 44471450 44471450 A G snoU13 5'Flank 0.39 TCGA-2W-A8YY-01 2 44528331 44528331 A G SLC3A1 Intron 0.36 TCGA-2W-A8YY-01 2 45169820 45169820 G A SIX3 Missense_Mutation p.V193M 0.45 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 2 45169973 45169973 G A SIX3 Missense_Mutation p.G244S 0.36 deleterious(0.01) possibly_damaging(0.846) TCGA-2W-A8YY-01 2 45171950 45171950 C A SIX3 3'UTR 0.32 TCGA-2W-A8YY-01 2 45172165 45172165 A G SIX3 3'UTR 0.39 TCGA-2W-A8YY-01 2 45236058 45236058 G A SIX2 Silent p.R64R 0.43 TCGA-2W-A8YY-01 2 45416344 45416344 C T LINC01121 RNA 0.45 TCGA-2W-A8YY-01 2 45879548 45879548 G A PRKCE Silent p.E103E 0.47 TCGA-2W-A8YY-01 2 46803251 46803251 T C RHOQ Missense_Mutation p.L76S 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 46819674 46819674 G T PIGF Missense_Mutation p.S162R 0.11 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 2 46842257 46842257 C T PIGF Missense_Mutation p.C16Y 0.47 tolerated(0.14) possibly_damaging(0.824) TCGA-2W-A8YY-01 2 46846813 46846813 A C CRIPT Missense_Mutation p.K44Q 0.33 deleterious(0.01) benign(0.259) TCGA-2W-A8YY-01 2 47049298 47049298 G T LINC01118 3'UTR 0.38 TCGA-2W-A8YY-01 2 47144328 47144328 A G MCFD2 5'Flank 0.23 TCGA-2W-A8YY-01 2 47221590 47221590 G A TTC7A Missense_Mutation p.G313D 0.26 tolerated(0.42) benign(0.025) TCGA-2W-A8YY-01 2 48045953 48045953 A G FBXO11 Silent p.D657D 0.51 TCGA-2W-A8YY-01 2 48848320 48848320 G T STON1-GTF2A1L Missense_Mutation p.K750N 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 48906636 48906636 A C STON1-GTF2A1L 3'UTR 0.29 TCGA-2W-A8YY-01 2 49190061 49190061 A C FSHR Missense_Mutation p.F633L 0.47 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 2 49190257 49190257 G A FSHR Missense_Mutation p.T568I 0.47 deleterious(0) possibly_damaging(0.629) TCGA-2W-A8YY-01 2 49381582 49381582 C A FSHR 5'UTR 0.42 TCGA-2W-A8YY-01 2 50966402 50966402 T G NRXN1 Intron 0.40 TCGA-2W-A8YY-01 2 51254788 51254788 C T NRXN1 Silent p.P208P 0.36 TCGA-2W-A8YY-01 2 53977983 53977983 G A ASB3 Missense_Mutation p.L133F 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 54080749 54080749 C T GPR75 Missense_Mutation p.G382E 0.32 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 2 54080948 54080948 C T GPR75 Missense_Mutation p.D316N 0.16 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 54096676 54096676 C A PSME4 Splice_Site p.X1701_splice 0.15 TCGA-2W-A8YY-01 2 54152781 54152781 T C PSME4 Silent p.E568E 0.12 TCGA-2W-A8YY-01 2 54155355 54155355 C T PSME4 Missense_Mutation p.V468I 0.34 tolerated(0.06) benign(0.259) TCGA-2W-A8YY-01 2 54482785 54482785 G A TSPYL6 Silent p.G168G 0.26 TCGA-2W-A8YY-01 2 54483411 54483411 C T ACYP2 Intron 0.42 TCGA-2W-A8YY-01 2 54826328 54826328 G A SPTBN1 Missense_Mutation p.R83Q 0.32 deleterious(0) benign(0.191) TCGA-2W-A8YY-01 2 54848603 54848603 T C SPTBN1 Missense_Mutation p.F277S 0.11 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 54856340 54856340 G A SPTBN1 Missense_Mutation p.R690H 0.25 tolerated(0.33) benign(0.047) TCGA-2W-A8YY-01 2 54856917 54856917 G T SPTBN1 Missense_Mutation p.E882D 0.33 tolerated(0.11) probably_damaging(0.928) TCGA-2W-A8YY-01 2 54871599 54871599 C T SPTBN1 Missense_Mutation p.A1382V 0.35 deleterious(0.02) possibly_damaging(0.904) TCGA-2W-A8YY-01 2 55080821 55080821 C T EML6 Missense_Mutation p.P496S 0.29 tolerated(0.75) benign(0.001) TCGA-2W-A8YY-01 2 55122438 55122438 T G EML6 Missense_Mutation p.I961M 0.38 deleterious(0) probably_damaging(0.916) TCGA-2W-A8YY-01 2 55195364 55195364 G A EML6 Missense_Mutation p.G1900R 0.15 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 55197236 55197236 C T EML6 3'UTR 0.46 TCGA-2W-A8YY-01 2 55471325 55471325 C A MTIF2 Missense_Mutation p.G384V 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 55473522 55473522 C T MTIF2 Missense_Mutation p.G353S 0.23 deleterious(0.02) benign(0.31) TCGA-2W-A8YY-01 2 55490823 55490823 G T MTIF2 Missense_Mutation p.L58I 0.34 tolerated_low_confidence(0.07) benign(0.007) TCGA-2W-A8YY-01 2 55522871 55522871 C T CCDC88A Missense_Mutation p.A1804T 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 2 55561376 55561376 T G CCDC88A Missense_Mutation p.N861H 0.32 tolerated(0.19) benign(0.02) TCGA-2W-A8YY-01 2 55776878 55776878 G A SMEK2 3'UTR 0.25 TCGA-2W-A8YY-01 2 55777053 55777053 G A SMEK2 Silent p.G848G 0.29 TCGA-2W-A8YY-01 2 55844518 55844518 G A SMEK2 5'UTR 0.53 TCGA-2W-A8YY-01 2 55872517 55872517 G A PNPT1 Nonsense_Mutation p.R597* 0.45 TCGA-2W-A8YY-01 2 55906900 55906900 T C PNPT1 Missense_Mutation p.E199G 0.48 deleterious(0.05) possibly_damaging(0.67) TCGA-2W-A8YY-01 2 56093915 56093915 G A EFEMP1 3'UTR 0.31 TCGA-2W-A8YY-01 2 56419963 56419963 G A CCDC85A Missense_Mutation p.G210S 0.14 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 56612188 56612188 T - CCDC85A 3'UTR 0.36 TCGA-2W-A8YY-01 2 5833252 5833252 C T SOX11 Silent p.S133S 0.40 TCGA-2W-A8YY-01 2 5833402 5833402 C T SOX11 Silent p.G183G 0.27 TCGA-2W-A8YY-01 2 5834458 5834458 C A SOX11 3'UTR 0.43 TCGA-2W-A8YY-01 2 58350300 58350300 A G VRK2 Missense_Mutation p.Q203R 0.08 tolerated(0.08) benign(0.098) TCGA-2W-A8YY-01 2 5836370 5836370 G A SOX11 3'UTR 0.36 TCGA-2W-A8YY-01 2 5837121 5837121 T C SOX11 3'UTR 0.33 TCGA-2W-A8YY-01 2 58387257 58387257 G A FANCL Missense_Mutation p.P365S 0.45 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 2 5839598 5839598 A T SOX11 3'UTR 0.12 TCGA-2W-A8YY-01 2 5840321 5840321 T C SOX11 3'UTR 0.37 TCGA-2W-A8YY-01 2 60687915 60687915 G A BCL11A Missense_Mutation p.S711L 0.36 deleterious(0) benign(0.177) TCGA-2W-A8YY-01 2 61024357 61024358 - T PAPOLG 3'UTR 0.29 TCGA-2W-A8YY-01 2 61118872 61118872 G A REL Missense_Mutation p.R22H 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 61128173 61128173 G T REL Nonsense_Mutation p.E117* 0.43 TCGA-2W-A8YY-01 2 61175278 61175278 G A PUS10 Nonsense_Mutation p.R451* 0.40 TCGA-2W-A8YY-01 2 61275677 61275677 G A PEX13 Silent p.A328A 0.44 TCGA-2W-A8YY-01 2 61275754 61275754 C T PEX13 Missense_Mutation p.S354F 0.41 deleterious(0.02) benign(0.245) TCGA-2W-A8YY-01 2 61319675 61319675 C T KIAA1841 Nonsense_Mutation p.R389* 0.40 TCGA-2W-A8YY-01 2 61333735 61333735 G T KIAA1841 Nonsense_Mutation p.E517* 0.38 TCGA-2W-A8YY-01 2 61413870 61413870 G A AHSA2 Silent p.Q121Q 0.77 TCGA-2W-A8YY-01 2 61575984 61575984 G A USP34 Silent p.S527S 0.52 TCGA-2W-A8YY-01 2 62067465 62067465 C T FAM161A Missense_Mutation p.R225K 0.38 tolerated(0.85) benign(0.001) TCGA-2W-A8YY-01 2 62104577 62104577 T C CCT4 Missense_Mutation p.T199A 0.31 tolerated(0.32) benign(0.014) TCGA-2W-A8YY-01 2 62228098 62228098 A G COMMD1 Missense_Mutation p.E148G 0.30 deleterious(0) probably_damaging(0.953) TCGA-2W-A8YY-01 2 62450803 62450803 C T B3GNT2 3'UTR 0.36 TCGA-2W-A8YY-01 2 62450952 62450952 T C B3GNT2 3'UTR 0.10 TCGA-2W-A8YY-01 2 62451574 62451574 T G B3GNT2 3'UTR 0.46 TCGA-2W-A8YY-01 2 62934355 62934355 G A EHBP1 Missense_Mutation p.R10H 0.41 deleterious(0) probably_damaging(0.956) TCGA-2W-A8YY-01 2 63058157 63058157 T C EHBP1 Silent p.D166D 0.09 TCGA-2W-A8YY-01 2 63272104 63272104 G A EHBP1 Intron 0.43 TCGA-2W-A8YY-01 2 63272282 63272282 C T EHBP1 Missense_Mutation p.A1191V 0.43 deleterious(0.02) probably_damaging(0.913) TCGA-2W-A8YY-01 2 63272467 63272467 C T EHBP1 Intron 0.55 TCGA-2W-A8YY-01 2 63273350 63273350 C T EHBP1 3'UTR 0.41 TCGA-2W-A8YY-01 2 63666890 63666890 C T WDPCP Splice_Site p.X167_splice 0.42 TCGA-2W-A8YY-01 2 63834106 63834106 T C MDH1 Silent p.F348F 0.30 TCGA-2W-A8YY-01 2 64147620 64147620 A G VPS54 Missense_Mutation p.F671L 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 2 64321912 64321912 G A PELI1 Missense_Mutation p.A394V 0.56 tolerated(0.84) benign(0.084) TCGA-2W-A8YY-01 2 64685501 64685501 C T LGALSL Missense_Mutation p.T153M 0.33 deleterious(0.02) possibly_damaging(0.555) TCGA-2W-A8YY-01 2 64796759 64796759 C T AFTPH Silent p.L739L 0.43 TCGA-2W-A8YY-01 2 64820043 64820043 C T AFTPH 3'UTR 0.41 TCGA-2W-A8YY-01 2 64862706 64862707 - A SERTAD2 3'UTR 0.31 TCGA-2W-A8YY-01 2 64862861 64862862 - A SERTAD2 3'UTR 0.36 TCGA-2W-A8YY-01 2 64863674 64863674 G A SERTAD2 Missense_Mutation p.A111V 0.30 tolerated(0.17) benign(0.001) TCGA-2W-A8YY-01 2 65245759 65245759 C T SLC1A4 Missense_Mutation p.A437V 0.27 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 65314048 65314048 T C RAB1A 3'UTR 0.41 TCGA-2W-A8YY-01 2 68269559 68269559 G T C1D 3'UTR 0.47 TCGA-2W-A8YY-01 2 68521056 68521056 A G CNRIP1 Missense_Mutation p.Y145H 0.27 deleterious(0) probably_damaging(0.961) TCGA-2W-A8YY-01 2 68691447 68691447 C T FBXO48 Missense_Mutation p.G121D 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 68794476 68794476 G T APLF Missense_Mutation p.K430N 0.37 deleterious(0) benign(0.376) TCGA-2W-A8YY-01 2 69040464 69040464 C T ARHGAP25 Silent p.L240L 0.40 TCGA-2W-A8YY-01 2 69201766 69201766 C A GKN1 5'UTR 0.33 TCGA-2W-A8YY-01 2 69420480 69420480 C T ANTXR1 Missense_Mutation p.A456V 0.48 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 2 69702278 69702278 A G AAK1 3'UTR 0.28 TCGA-2W-A8YY-01 2 69702959 69702959 C T AAK1 3'UTR 0.32 TCGA-2W-A8YY-01 2 69757814 69757814 T C AAK1 Silent p.A227A 0.09 TCGA-2W-A8YY-01 2 6990021 6990021 G A CMPK2 Missense_Mutation p.T437M 0.10 tolerated(0.28) benign(0.075) TCGA-2W-A8YY-01 2 7003664 7003664 C T CMPK2 Missense_Mutation p.D241N 0.36 deleterious(0.02) possibly_damaging(0.629) TCGA-2W-A8YY-01 2 7005252 7005252 G A CMPK2 Silent p.V192V 0.40 TCGA-2W-A8YY-01 2 70164446 70164446 T C MXD1 Missense_Mutation p.L133P 0.20 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 70165993 70165993 C T MXD1 3'UTR 0.24 TCGA-2W-A8YY-01 2 70166872 70166872 G A MXD1 3'UTR 0.33 TCGA-2W-A8YY-01 2 70167910 70167910 G A MXD1 3'UTR 0.33 TCGA-2W-A8YY-01 2 70168030 70168030 G A MXD1 3'UTR 0.33 TCGA-2W-A8YY-01 2 70189055 70189055 T C ASPRV1 5'UTR 0.32 TCGA-2W-A8YY-01 2 70191367 70191367 G A ASPRV1 5'Flank 0.42 TCGA-2W-A8YY-01 2 70486593 70486593 G A PCYOX1 Missense_Mutation p.G72R 0.28 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 70488436 70488436 G A PCYOX1 Missense_Mutation p.V138M 0.27 tolerated(0.34) benign(0.027) TCGA-2W-A8YY-01 2 71043256 71043256 G A CLEC4F Silent p.A419A 0.40 TCGA-2W-A8YY-01 2 71046917 71046917 G A CLEC4F Silent p.L56L 0.19 TCGA-2W-A8YY-01 2 71190710 71190710 C A ATP6V1B1 Missense_Mutation p.H357N 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-2W-A8YY-01 2 71212322 71212322 C T ANKRD53 Silent p.T495T 0.12 TCGA-2W-A8YY-01 2 71295771 71295771 G A NAGK Silent p.G32G 0.30 TCGA-2W-A8YY-01 2 71298877 71298877 G T NAGK Missense_Mutation p.R138M 0.27 tolerated(0.16) benign(0.016) TCGA-2W-A8YY-01 2 71360315 71360315 A G MPHOSPH10 Missense_Mutation p.D126G 0.34 tolerated(0.74) benign(0) TCGA-2W-A8YY-01 2 71361216 71361216 G T MPHOSPH10 Nonsense_Mutation p.E303* 0.32 TCGA-2W-A8YY-01 2 71365660 71365660 A - MPHOSPH10 Frame_Shift_Del p.K382Sfs*9 0.32 TCGA-2W-A8YY-01 2 71377123 71377123 C A MPHOSPH10 Missense_Mutation p.S675Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 71575646 71575646 G T ZNF638 5'UTR 0.09 TCGA-2W-A8YY-01 2 71595544 71595544 G A ZNF638 Silent p.S676S 0.40 TCGA-2W-A8YY-01 2 71650070 71650070 G A ZNF638 Silent p.Q1142Q 0.37 TCGA-2W-A8YY-01 2 71650489 71650489 C T ZNF638 Missense_Mutation p.T1282M 0.20 deleterious(0.02) possibly_damaging(0.518) TCGA-2W-A8YY-01 2 71661993 71661993 T C ZNF638 3'UTR 0.24 TCGA-2W-A8YY-01 2 71680984 71680984 C T DYSF 5'UTR 0.25 TCGA-2W-A8YY-01 2 71783183 71783183 A C DYSF Missense_Mutation p.E733A 0.41 tolerated(0.08) benign(0.087) TCGA-2W-A8YY-01 2 71838380 71838380 G T DYSF Missense_Mutation p.E1321D 0.27 tolerated(1) benign(0) TCGA-2W-A8YY-01 2 71839802 71839802 C T DYSF Missense_Mutation p.P1418L 0.41 deleterious(0) possibly_damaging(0.883) TCGA-2W-A8YY-01 2 71839829 71839829 G A DYSF Missense_Mutation p.R1427H 0.38 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 2 72356493 72356493 C T CYP26B1 3'UTR 0.40 TCGA-2W-A8YY-01 2 72562075 72562075 C A EXOC6B Splice_Site p.X732_splice 0.52 TCGA-2W-A8YY-01 2 72692280 72692280 G A EXOC6B Intron 0.31 TCGA-2W-A8YY-01 2 73144152 73144152 A G EMX1 5'Flank 0.41 TCGA-2W-A8YY-01 2 73302558 73302558 G A RAB11FIP5 3'UTR 0.19 TCGA-2W-A8YY-01 2 73302776 73302776 C T RAB11FIP5 Missense_Mutation p.R612Q 0.51 tolerated(0.56) probably_damaging(0.969) TCGA-2W-A8YY-01 2 73316229 73316229 C T RAB11FIP5 Missense_Mutation p.A216T 0.14 tolerated(0.28) possibly_damaging(0.603) TCGA-2W-A8YY-01 2 73456615 73456615 C A PRADC1 Missense_Mutation p.Q84H 0.41 tolerated(0.07) probably_damaging(0.911) TCGA-2W-A8YY-01 2 73474937 73474937 C T CCT7 Silent p.Y222Y 0.27 TCGA-2W-A8YY-01 2 73481957 73481957 C T FBXO41 3'UTR 0.31 TCGA-2W-A8YY-01 2 73491551 73491551 C T FBXO41 Missense_Mutation p.R554Q 0.36 deleterious(0.01) benign(0.368) TCGA-2W-A8YY-01 2 73492423 73492423 G A FBXO41 Silent p.S517S 0.43 TCGA-2W-A8YY-01 2 73493712 73493712 C T FBXO41 Missense_Mutation p.R335Q 0.40 deleterious(0.01) possibly_damaging(0.518) TCGA-2W-A8YY-01 2 73646336 73646336 C T ALMS1 Missense_Mutation p.T179M 0.48 possibly_damaging(0.78) TCGA-2W-A8YY-01 2 73900104 73900104 G A ALMS1P RNA 0.30 TCGA-2W-A8YY-01 2 74136221 74136221 G A ACTG2 Missense_Mutation p.A136T 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.462) TCGA-2W-A8YY-01 2 74185919 74185919 A C DGUOK 3'UTR 0.10 TCGA-2W-A8YY-01 2 74315002 74315002 C T TET3 Missense_Mutation p.R774W 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 2 74328352 74328352 C A TET3 Nonsense_Mutation p.C1344* 0.10 TCGA-2W-A8YY-01 2 74362715 74362715 C T BOLA3 3'UTR 0.42 TCGA-2W-A8YY-01 2 74441314 74441314 G T MTHFD2 Missense_Mutation p.R333M 0.35 deleterious(0.01) possibly_damaging(0.711) TCGA-2W-A8YY-01 2 74454983 74454983 T C SLC4A5 Missense_Mutation p.Y957C 0.14 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 2 74480195 74480195 C T SLC4A5 Missense_Mutation p.E392K 0.49 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 74531702 74531702 C T SLC4A5 Missense_Mutation p.R62Q 0.52 tolerated(0.09) benign(0.001) TCGA-2W-A8YY-01 2 74598126 74598126 G A DCTN1 Missense_Mutation p.R275C 0.39 deleterious(0) possibly_damaging(0.582) TCGA-2W-A8YY-01 2 74605263 74605263 C A DCTN1 Missense_Mutation p.G48V 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 74605347 74605347 G A DCTN1 Missense_Mutation p.A20V 0.31 tolerated_low_confidence(0.44) benign(0.001) TCGA-2W-A8YY-01 2 74653437 74653437 C T RTKN Missense_Mutation p.R542Q 0.29 tolerated(0.21) benign(0.009) TCGA-2W-A8YY-01 2 74657640 74657640 G A RTKN Missense_Mutation p.R127W 0.17 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 74687001 74687001 G A WBP1 Nonsense_Mutation p.W58* 0.47 TCGA-2W-A8YY-01 2 74688507 74688507 G T MOGS Silent p.G803G 0.29 TCGA-2W-A8YY-01 2 74688665 74688665 G A MOGS Missense_Mutation p.R751W 0.11 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 74688789 74688789 A G MOGS Silent p.L709L 0.34 TCGA-2W-A8YY-01 2 74688896 74688896 G A MOGS Missense_Mutation p.R674W 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 74689389 74689389 G A MOGS Silent p.H509H 0.30 TCGA-2W-A8YY-01 2 74690053 74690053 C T MOGS Missense_Mutation p.R288Q 0.43 tolerated(0.61) benign(0.019) TCGA-2W-A8YY-01 2 74690377 74690377 T C MOGS Missense_Mutation p.D239G 0.29 tolerated(0.14) benign(0.335) TCGA-2W-A8YY-01 2 74699268 74699268 G A MRPL53 Missense_Mutation p.P106L 0.34 deleterious_low_confidence(0.05) benign(0.003) TCGA-2W-A8YY-01 2 74701488 74701488 C T CCDC142 3'UTR 0.70 TCGA-2W-A8YY-01 2 74709259 74709259 G T CCDC142 Missense_Mutation p.L236I 0.42 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 2 74733902 74733902 G A PCGF1 Silent p.V103V 0.38 TCGA-2W-A8YY-01 2 74749888 74749888 T C DQX1 Silent p.A438A 0.32 TCGA-2W-A8YY-01 2 74756753 74756753 C T AUP1 Missense_Mutation p.E2K 0.28 deleterious_low_confidence(0.02) benign(0.075) TCGA-2W-A8YY-01 2 74762528 74762528 C T LOXL3 Silent p.V490V 0.27 TCGA-2W-A8YY-01 2 74763429 74763429 C T LOXL3 Missense_Mutation p.R361H 0.48 deleterious(0.03) possibly_damaging(0.535) TCGA-2W-A8YY-01 2 74779543 74779543 G A LOXL3 Silent p.D73D 0.34 TCGA-2W-A8YY-01 2 74883811 74883811 G T SEMA4F Missense_Mutation p.R99M 0.34 tolerated(0.19) benign(0.202) TCGA-2W-A8YY-01 2 74900818 74900818 G A SEMA4F Missense_Mutation p.A229T 0.31 deleterious(0.02) possibly_damaging(0.501) TCGA-2W-A8YY-01 2 74902022 74902022 G A SEMA4F Missense_Mutation p.A337T 0.33 tolerated(0.07) possibly_damaging(0.601) TCGA-2W-A8YY-01 2 75105970 75105970 G A HK2 Missense_Mutation p.R396H 0.39 tolerated(0.14) benign(0.01) TCGA-2W-A8YY-01 2 75107655 75107655 A G HK2 Missense_Mutation p.K510R 0.10 tolerated(0.37) probably_damaging(0.999) TCGA-2W-A8YY-01 2 75108876 75108876 A G HK2 Missense_Mutation p.N537D 0.29 deleterious(0.01) possibly_damaging(0.469) TCGA-2W-A8YY-01 2 75158070 75158070 C T AC104135.3 RNA 0.25 TCGA-2W-A8YY-01 2 75196562 75196562 G A POLE4 3'UTR 0.11 TCGA-2W-A8YY-01 2 75882227 75882227 G A MRPL19 Missense_Mutation p.R232H 0.34 deleterious(0.02) possibly_damaging(0.717) TCGA-2W-A8YY-01 2 77746985 77746985 G T LRRTM4 Missense_Mutation p.H4N 0.46 tolerated(0.43) benign(0.025) TCGA-2W-A8YY-01 2 80085200 80085200 C T CTNNA2 Silent p.R120R 0.15 TCGA-2W-A8YY-01 2 80529196 80529196 G A LRRTM1 3'UTR 0.30 TCGA-2W-A8YY-01 2 80530527 80530527 G A LRRTM1 Missense_Mutation p.R140C 0.47 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 80531310 80531310 G A LRRTM1 5'UTR 0.12 TCGA-2W-A8YY-01 2 80808908 80808908 T C CTNNA2 Silent p.T657T 0.19 TCGA-2W-A8YY-01 2 80874898 80874898 G A CTNNA2 Silent p.K873K 0.46 TCGA-2W-A8YY-01 2 84517948 84517948 C T FUNDC2P2 RNA 0.38 TCGA-2W-A8YY-01 2 84518282 84518282 A G FUNDC2P2 RNA 0.36 TCGA-2W-A8YY-01 2 84652585 84652585 A C SUCLG1 Missense_Mutation p.V323G 0.12 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 2 84658664 84658664 T C SUCLG1 Missense_Mutation p.N265D 0.29 tolerated(0.84) benign(0.002) TCGA-2W-A8YY-01 2 84756076 84756076 C T DNAH6 Missense_Mutation p.P150S 0.31 tolerated_low_confidence(0.43) benign(0.002) TCGA-2W-A8YY-01 2 84908600 84908600 C T DNAH6 Silent p.P2288P 0.32 TCGA-2W-A8YY-01 2 84915596 84915596 G A DNAH6 Missense_Mutation p.D2391N 0.37 deleterious(0.01) benign(0.004) TCGA-2W-A8YY-01 2 84932695 84932695 C T DNAH6 Missense_Mutation p.P2851S 0.44 tolerated(0.08) benign(0.178) TCGA-2W-A8YY-01 2 84949831 84949831 G A DNAH6 Missense_Mutation p.R3292H 0.29 deleterious(0) probably_damaging(0.953) TCGA-2W-A8YY-01 2 85065245 85065245 C A TRABD2A Intron 0.38 TCGA-2W-A8YY-01 2 85531026 85531026 C T TCF7L1 Missense_Mutation p.R223W 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 85536195 85536195 G A TCF7L1 Silent p.L459L 0.37 TCGA-2W-A8YY-01 2 85628664 85628664 G A CAPG Silent p.G113G 0.21 TCGA-2W-A8YY-01 2 85656587 85656587 C T SH2D6 5'UTR 0.27 TCGA-2W-A8YY-01 2 85662217 85662217 G A SH2D6 Missense_Mutation p.A47T 0.45 tolerated(0.06) benign(0.047) TCGA-2W-A8YY-01 2 85662808 85662808 G A SH2D6 Missense_Mutation p.R91H 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 85779091 85779091 G A GGCX Missense_Mutation p.R485C 0.35 deleterious(0.01) possibly_damaging(0.893) TCGA-2W-A8YY-01 2 85780438 85780438 G A GGCX Silent p.L358L 0.10 TCGA-2W-A8YY-01 2 85826772 85826772 C T TMEM150A Silent p.A150A 0.44 TCGA-2W-A8YY-01 2 85843386 85843386 G A USP39 Missense_Mutation p.G23D 0.14 tolerated_low_confidence(0.68) unknown(0) TCGA-2W-A8YY-01 2 85866516 85866516 T C USP39 Splice_Site p.X428_splice 0.49 TCGA-2W-A8YY-01 2 85999812 85999812 G T ATOH8 Intron 0.33 TCGA-2W-A8YY-01 2 86270193 86270193 G A POLR1A Silent p.G1087G 0.49 TCGA-2W-A8YY-01 2 86276133 86276133 G A POLR1A Silent p.A836A 0.41 TCGA-2W-A8YY-01 2 86308085 86308085 G A POLR1A Missense_Mutation p.R314C 0.36 tolerated(0.2) possibly_damaging(0.458) TCGA-2W-A8YY-01 2 86360559 86360559 G T PTCD3 Missense_Mutation p.D515Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 2 86371483 86371483 G A IMMT Nonsense_Mutation p.R729* 0.45 TCGA-2W-A8YY-01 2 86373281 86373281 G A IMMT Missense_Mutation p.R525C 0.45 deleterious(0) possibly_damaging(0.766) TCGA-2W-A8YY-01 2 86389145 86389145 G A IMMT Missense_Mutation p.R284C 0.38 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 2 86389172 86389172 G A IMMT Missense_Mutation p.R275C 0.11 deleterious(0) probably_damaging(0.953) TCGA-2W-A8YY-01 2 86400877 86400877 G A IMMT Missense_Mutation p.S106L 0.27 tolerated(0.25) benign(0.311) TCGA-2W-A8YY-01 2 86440470 86440470 G T MRPL35 3'UTR 0.38 TCGA-2W-A8YY-01 2 86443825 86443825 T C REEP1 3'UTR 0.30 TCGA-2W-A8YY-01 2 86459916 86459916 C T REEP1 Missense_Mutation p.A150T 0.21 tolerated(0.11) benign(0.218) TCGA-2W-A8YY-01 2 86719220 86719220 A G KDM3A Missense_Mutation p.E1315G 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-2W-A8YY-01 2 86831715 86831715 T C RNF103 Missense_Mutation p.K437E 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-2W-A8YY-01 2 86979115 86979115 C T RMND5A Nonsense_Mutation p.R128* 0.36 TCGA-2W-A8YY-01 2 87001151 87001151 C T RMND5A 3'UTR 0.48 TCGA-2W-A8YY-01 2 87240241 87240241 C T PLGLB1 Intron 0.74 TCGA-2W-A8YY-01 2 8824159 8824159 C T ID2 3'UTR 0.22 TCGA-2W-A8YY-01 2 88367476 88367476 T C SMYD1 Silent p.D31D 0.21 TCGA-2W-A8YY-01 2 8870960 8870960 G A KIDINS220 Nonsense_Mutation p.R1736* 0.45 TCGA-2W-A8YY-01 2 88748155 88748155 G A FOXI3 RNA 0.11 TCGA-2W-A8YY-01 2 8888103 8888103 G A KIDINS220 Missense_Mutation p.P1148S 0.10 deleterious(0.03) unknown(0) TCGA-2W-A8YY-01 2 88885373 88885373 G A EIF2AK3 Missense_Mutation p.P546S 0.34 tolerated(0.08) possibly_damaging(0.837) TCGA-2W-A8YY-01 2 89157134 89157134 T G IGKC Missense_Mutation p.T22P 0.48 tolerated(0.15) benign(0.023) TCGA-2W-A8YY-01 2 89292038 89292038 G A IGKV1-8 Missense_Mutation p.P79S 0.09 deleterious(0.03) benign(0.446) TCGA-2W-A8YY-01 2 8998762 8998762 T C MBOAT2 3'UTR 0.21 TCGA-2W-A8YY-01 2 90078071 90078071 G A IGKV3D-20 Silent p.G36G 0.29 TCGA-2W-A8YY-01 2 90198980 90198980 G A IGKV1D-12 Silent p.A47A 0.36 TCGA-2W-A8YY-01 2 9437557 9437557 G A ASAP2 Missense_Mutation p.A110T 0.47 tolerated(0.31) possibly_damaging(0.685) TCGA-2W-A8YY-01 2 9519133 9519133 C T ASAP2 Silent p.T631T 0.42 TCGA-2W-A8YY-01 2 9533749 9533749 G A ASAP2 Missense_Mutation p.R886H 0.30 tolerated(0.06) possibly_damaging(0.891) TCGA-2W-A8YY-01 2 9540931 9540931 C A ASAP2 Missense_Mutation p.P932H 0.10 deleterious(0) probably_damaging(0.91) TCGA-2W-A8YY-01 2 9546907 9546907 C T ITGB1BP1 3'UTR 0.41 TCGA-2W-A8YY-01 2 9574007 9574007 A G CPSF3 Missense_Mutation p.Y176C 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 95943311 95943311 C T PROM2 Silent p.S324S 0.17 TCGA-2W-A8YY-01 2 95950804 95950804 C A PROM2 Missense_Mutation p.L606M 0.12 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 2 95954324 95954324 C T PROM2 Missense_Mutation p.R810W 0.38 tolerated(0.08) benign(0.059) TCGA-2W-A8YY-01 2 95976264 95976264 C A KCNIP3 Silent p.G59G 0.38 TCGA-2W-A8YY-01 2 96078466 96078466 C - FAHD2A Frame_Shift_Del p.P281Qfs*26 0.41 TCGA-2W-A8YY-01 2 96563041 96563041 T G ANKRD36C Missense_Mutation p.K264T 0.12 tolerated(0.07) possibly_damaging(0.512) TCGA-2W-A8YY-01 2 96583602 96583602 C T ANKRD36C Splice_Site 0.44 TCGA-2W-A8YY-01 2 96652604 96652604 C T ANKRD36C Silent p.T127T 0.26 TCGA-2W-A8YY-01 2 96781295 96781295 G A ADRA2B Silent p.I198I 0.26 TCGA-2W-A8YY-01 2 96852019 96852019 G T STARD7 3'UTR 0.29 TCGA-2W-A8YY-01 2 96858862 96858862 G A STARD7 Missense_Mutation p.R233W 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 2 96933200 96933200 A C CIAO1 Missense_Mutation p.D94A 0.39 tolerated(0.06) benign(0.146) TCGA-2W-A8YY-01 2 96949030 96949030 C T SNRNP200 Silent p.T1608T 0.36 TCGA-2W-A8YY-01 2 96951052 96951052 C T SNRNP200 Missense_Mutation p.D1344N 0.21 deleterious(0.03) possibly_damaging(0.905) TCGA-2W-A8YY-01 2 96952472 96952472 C T SNRNP200 Silent p.P1261P 0.29 TCGA-2W-A8YY-01 2 96952521 96952521 T C SNRNP200 Missense_Mutation p.Y1245C 0.39 deleterious(0.01) probably_damaging(0.981) TCGA-2W-A8YY-01 2 97030231 97030231 G A NCAPH Missense_Mutation p.A534T 0.42 tolerated(0.26) benign(0.034) TCGA-2W-A8YY-01 2 97034776 97034776 G A NCAPH Missense_Mutation p.G689R 0.40 tolerated(0.48) benign(0.005) TCGA-2W-A8YY-01 2 97163954 97163954 C T NEURL3 RNA 0.20 TCGA-2W-A8YY-01 2 97165170 97165170 C T NEURL3 RNA 0.45 TCGA-2W-A8YY-01 2 97217272 97217272 C T ARID5A Missense_Mutation p.A336V 0.32 tolerated(0.1) benign(0.118) TCGA-2W-A8YY-01 2 97217676 97217676 G A ARID5A Missense_Mutation p.A471T 0.44 tolerated(0.46) benign(0.01) TCGA-2W-A8YY-01 2 97279223 97279223 A G KANSL3 Splice_Site p.X265_splice 0.38 TCGA-2W-A8YY-01 2 97338912 97338912 C T FER1L5 RNA 0.43 TCGA-2W-A8YY-01 2 97353597 97353597 C T FER1L5 RNA 0.27 TCGA-2W-A8YY-01 2 97365721 97365721 C T FER1L5 RNA 0.35 TCGA-2W-A8YY-01 2 97370337 97370337 A C LMAN2L 3'Flank 0.43 TCGA-2W-A8YY-01 2 97373548 97373548 C T LMAN2L Silent p.L280L 0.10 TCGA-2W-A8YY-01 2 97427660 97427660 C A CNNM4 Missense_Mutation p.F308L 0.35 tolerated(0.82) benign(0.004) TCGA-2W-A8YY-01 2 97475508 97475508 G A CNNM4 3'UTR 0.32 TCGA-2W-A8YY-01 2 97475639 97475639 C T CNNM4 3'UTR 0.10 TCGA-2W-A8YY-01 2 97475837 97475837 G A CNNM4 3'UTR 0.24 TCGA-2W-A8YY-01 2 97477530 97477530 T C CNNM4 3'UTR 0.37 TCGA-2W-A8YY-01 2 97498989 97498989 T G CNNM3 3'UTR 0.35 TCGA-2W-A8YY-01 2 97504071 97504071 T C ANKRD23 3'UTR 0.25 TCGA-2W-A8YY-01 2 97505787 97505787 C A ANKRD23 Missense_Mutation p.D224Y 0.36 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 2 97526806 97526806 G A SEMA4C Missense_Mutation p.R687C 0.43 tolerated(0.14) possibly_damaging(0.855) TCGA-2W-A8YY-01 2 97530101 97530101 C T SEMA4C Silent p.S327S 0.38 TCGA-2W-A8YY-01 2 97757325 97757325 G A FAHD2B Missense_Mutation p.P40L 0.39 tolerated(0.14) benign(0.013) TCGA-2W-A8YY-01 2 97792872 97792872 G A ANKRD36 Splice_Site p.X267_splice 0.31 TCGA-2W-A8YY-01 2 97873570 97873570 C A ANKRD36 Silent p.G1062G 0.41 TCGA-2W-A8YY-01 2 97873728 97873729 - A ANKRD36 Frame_Shift_Ins p.T1086Nfs*2 0.13 TCGA-2W-A8YY-01 2 97879307 97879307 C T ANKRD36 Missense_Mutation p.S1176L 0.31 tolerated(0.41) benign(0.037) TCGA-2W-A8YY-01 2 98340498 98340498 C T ZAP70 5'UTR 0.32 TCGA-2W-A8YY-01 2 98377286 98377286 C T TMEM131 Missense_Mutation p.A1661T 0.44 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-2W-A8YY-01 2 98887236 98887236 G A VWA3B Missense_Mutation p.E979K 0.35 deleterious(0.01) possibly_damaging(0.87) TCGA-2W-A8YY-01 2 99136550 99136550 G T INPP4A Missense_Mutation p.R13S 0.29 deleterious_low_confidence(0) benign(0.35) TCGA-2W-A8YY-01 2 99439934 99439934 G A KIAA1211L Missense_Mutation p.P268S 0.32 tolerated(0.31) possibly_damaging(0.803) TCGA-2W-A8YY-01 2 99454713 99454713 A T KIAA1211L Missense_Mutation p.F36L 0.40 tolerated(0.19) benign(0.294) TCGA-2W-A8YY-01 2 99634790 99634790 G A TSGA10 Missense_Mutation p.R649C 0.44 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 2 99695211 99695211 C A TSGA10 Missense_Mutation p.D265Y 0.23 deleterious(0.02) possibly_damaging(0.676) TCGA-2W-A8YY-01 2 99788052 99788052 T C MITD1 Missense_Mutation p.E104G 0.43 tolerated(0.09) benign(0.049) TCGA-2W-A8YY-01 2 99863180 99863180 A G LYG2 Silent p.S49S 0.36 TCGA-2W-A8YY-01 2 99907817 99907817 C G LYG1 Missense_Mutation p.M72I 0.54 tolerated(1) benign(0.013) TCGA-2W-A8YY-01 3 100174759 100174759 G T LNP1 Missense_Mutation p.G176W 0.15 tolerated_low_confidence(0.08) benign(0.035) TCGA-2W-A8YY-01 3 100274198 100274198 G A TMEM45A Missense_Mutation p.R48Q 0.48 deleterious(0.03) possibly_damaging(0.864) TCGA-2W-A8YY-01 3 100455497 100455497 C T TFG Missense_Mutation p.P220S 0.29 tolerated(0.08) benign(0.134) TCGA-2W-A8YY-01 3 100506599 100506599 T A ABI3BP Intron 0.49 TCGA-2W-A8YY-01 3 100534765 100534765 T C ABI3BP Intron 0.26 TCGA-2W-A8YY-01 3 100554457 100554457 C T ABI3BP Intron 0.62 TCGA-2W-A8YY-01 3 10084827 10084827 C T FANCD2 Nonsense_Mutation p.R328* 0.41 TCGA-2W-A8YY-01 3 101010336 101010336 C T IMPG2 Missense_Mutation p.E174K 0.47 deleterious(0.01) benign(0.02) TCGA-2W-A8YY-01 3 101044877 101044877 A G SENP7 Silent p.F1021F 0.50 TCGA-2W-A8YY-01 3 10106083 10106083 T C FANCD2 Missense_Mutation p.F664S 0.10 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 3 10107135 10107135 G A FANCD2 Silent p.E742E 0.39 TCGA-2W-A8YY-01 3 101136559 101136559 G A SENP7 Silent p.N120N 0.40 TCGA-2W-A8YY-01 3 101312163 101312163 G A PCNP 3'UTR 0.45 TCGA-2W-A8YY-01 3 101378821 101378821 G A ZBTB11 Missense_Mutation p.R618C 0.50 tolerated(0.05) probably_damaging(1) TCGA-2W-A8YY-01 3 101446328 101446328 A C CEP97 Missense_Mutation p.E96D 0.35 deleterious(0.01) possibly_damaging(0.816) TCGA-2W-A8YY-01 3 101540535 101540535 C T NXPE3 Nonsense_Mutation p.R473* 0.42 TCGA-2W-A8YY-01 3 101578208 101578208 C T NFKBIZ Missense_Mutation p.P717L 0.18 tolerated(0.17) benign(0.081) TCGA-2W-A8YY-01 3 10168678 10168678 C T BRK1 3'UTR 0.47 TCGA-2W-A8YY-01 3 10321812 10321812 G T TATDN2 3'UTR 0.49 TCGA-2W-A8YY-01 3 10326684 10326684 A G GHRL 3'Flank 0.50 TCGA-2W-A8YY-01 3 10334704 10334704 G A GHRL 5'Flank 0.50 TCGA-2W-A8YY-01 3 10384537 10384537 G A ATP2B2 Missense_Mutation p.P939L 0.27 deleterious(0.02) benign(0.429) TCGA-2W-A8YY-01 3 10417133 10417133 G A ATP2B2 Missense_Mutation p.S466L 0.59 deleterious(0.02) probably_damaging(0.997) TCGA-2W-A8YY-01 3 105294414 105294414 G A ALCAM 3'UTR 0.15 TCGA-2W-A8YY-01 3 105294518 105294519 - T ALCAM 3'UTR 0.56 TCGA-2W-A8YY-01 3 105294861 105294861 C T ALCAM 3'UTR 0.33 TCGA-2W-A8YY-01 3 105378034 105378034 G A CBLB Missense_Mutation p.P910L 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 3 108127177 108127177 G A MYH15 Silent p.L1544L 0.35 TCGA-2W-A8YY-01 3 108163574 108163574 C A MYH15 Missense_Mutation p.E876D 0.42 tolerated(0.12) possibly_damaging(0.771) TCGA-2W-A8YY-01 3 108179160 108179160 G A MYH15 Missense_Mutation p.A660V 0.28 deleterious(0.01) possibly_damaging(0.686) TCGA-2W-A8YY-01 3 108214638 108214638 A G MYH15 Missense_Mutation p.S254P 0.46 deleterious(0.01) probably_damaging(0.984) TCGA-2W-A8YY-01 3 108303931 108303931 G A KIAA1524 Silent p.I77I 0.40 TCGA-2W-A8YY-01 3 108407496 108407496 A G DZIP3 Silent p.S1109S 0.34 TCGA-2W-A8YY-01 3 108751641 108751641 G A MORC1 Silent p.S497S 0.14 TCGA-2W-A8YY-01 3 108868767 108868767 G A RP11-59E19.1 RNA 0.40 TCGA-2W-A8YY-01 3 109046725 109046725 C T DPPA4 3'UTR 0.42 TCGA-2W-A8YY-01 3 109128900 109128900 G A RP11-702L6.4 RNA 0.32 TCGA-2W-A8YY-01 3 11058951 11058951 C T SLC6A1 Silent p.S18S 0.32 TCGA-2W-A8YY-01 3 11079156 11079156 G A SLC6A1 3'UTR 0.36 TCGA-2W-A8YY-01 3 110852707 110852707 G A PVRL3 Missense_Mutation p.R432Q 0.45 tolerated(0.3) benign(0.007) TCGA-2W-A8YY-01 3 111260947 111260947 C A CD96 5'Flank 0.39 TCGA-2W-A8YY-01 3 111313184 111313184 C A ZBED2 5'UTR 0.26 TCGA-2W-A8YY-01 3 111313859 111313859 C T ZBED2 5'UTR 0.36 TCGA-2W-A8YY-01 3 111317006 111317006 G A CD96 Missense_Mutation p.A299T 0.57 deleterious(0.02) probably_damaging(0.961) TCGA-2W-A8YY-01 3 111564669 111564669 C T PLCXD2 Intron 0.32 TCGA-2W-A8YY-01 3 111700766 111700766 C A ABHD10 Missense_Mutation p.A93E 0.32 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 3 111766776 111766776 C T TMPRSS7 Silent p.Y181Y 0.34 TCGA-2W-A8YY-01 3 111795727 111795727 T C TMPRSS7 Missense_Mutation p.S528P 0.29 deleterious(0.02) benign(0.281) TCGA-2W-A8YY-01 3 111821807 111821807 G A C3orf52 Missense_Mutation p.E131K 0.34 tolerated_low_confidence(0.39) benign(0.091) TCGA-2W-A8YY-01 3 111842415 111842415 G A GCSAM Nonsense_Mutation p.R144* 0.38 TCGA-2W-A8YY-01 3 112262931 112262931 G T ATG3 Silent p.A122A 0.32 TCGA-2W-A8YY-01 3 112301546 112301546 A G SLC35A5 Missense_Mutation p.K413R 0.41 deleterious_low_confidence(0.04) benign(0.076) TCGA-2W-A8YY-01 3 112356938 112356938 C T CCDC80 Silent p.T605T 0.28 TCGA-2W-A8YY-01 3 112357665 112357665 C T CCDC80 Missense_Mutation p.R363Q 0.38 tolerated(0.29) benign(0) TCGA-2W-A8YY-01 3 112357828 112357828 C T CCDC80 Missense_Mutation p.E309K 0.28 tolerated(0.37) benign(0.017) TCGA-2W-A8YY-01 3 112358576 112358576 G A CCDC80 Silent p.R59R 0.38 TCGA-2W-A8YY-01 3 112648107 112648107 G A CD200R1 Silent p.D150D 0.33 TCGA-2W-A8YY-01 3 112714105 112714105 C T GTPBP8 Nonsense_Mutation p.R187* 0.34 TCGA-2W-A8YY-01 3 112715801 112715801 C T GTPBP8 Missense_Mutation p.A210V 0.38 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 3 112998246 112998246 C T BOC Missense_Mutation p.A655V 0.23 deleterious(0.04) possibly_damaging(0.861) TCGA-2W-A8YY-01 3 112998254 112998254 G A BOC Missense_Mutation p.A658T 0.21 tolerated(0.07) benign(0.307) TCGA-2W-A8YY-01 3 113010503 113010503 G A WDR52 Silent p.A1822A 0.28 TCGA-2W-A8YY-01 3 113138998 113138998 G A WDR52 Nonsense_Mutation p.R146* 0.44 TCGA-2W-A8YY-01 3 113139021 113139021 G T WDR52 Missense_Mutation p.S138Y 0.44 deleterious(0) probably_damaging(0.943) TCGA-2W-A8YY-01 3 113187626 113187626 T A SPICE1 Missense_Mutation p.K291I 0.40 deleterious(0.04) possibly_damaging(0.807) TCGA-2W-A8YY-01 3 113321943 113321943 C T SIDT1 Silent p.S403S 0.29 TCGA-2W-A8YY-01 3 113322825 113322825 G T SIDT1 Missense_Mutation p.D428Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 113329878 113329878 G A SIDT1 Missense_Mutation p.A582T 0.33 deleterious(0.05) benign(0.365) TCGA-2W-A8YY-01 3 113342318 113342318 A G SIDT1 Missense_Mutation p.Y712C 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 113346880 113346880 G A SIDT1 3'UTR 0.42 TCGA-2W-A8YY-01 3 113347047 113347047 G A SIDT1 3'UTR 0.45 TCGA-2W-A8YY-01 3 113374098 113374098 T C KIAA2018 Missense_Mutation p.N2144S 0.22 benign(0.021) TCGA-2W-A8YY-01 3 113375227 113375227 G A KIAA2018 Missense_Mutation p.R1768W 0.43 probably_damaging(1) TCGA-2W-A8YY-01 3 113376013 113376013 G A KIAA2018 Missense_Mutation p.P1506S 0.08 benign(0.006) TCGA-2W-A8YY-01 3 113377243 113377243 G A KIAA2018 Missense_Mutation p.R1096C 0.46 benign(0.097) TCGA-2W-A8YY-01 3 113377648 113377648 A C KIAA2018 Missense_Mutation p.L961V 0.34 benign(0.002) TCGA-2W-A8YY-01 3 113378760 113378760 G T KIAA2018 Missense_Mutation p.P590H 0.48 possibly_damaging(0.759) TCGA-2W-A8YY-01 3 11340203 11340203 A G ATG7 Missense_Mutation p.K12E 0.48 tolerated(0.53) benign(0.007) TCGA-2W-A8YY-01 3 113588401 113588401 G A GRAMD1C Silent p.Q74Q 0.29 TCGA-2W-A8YY-01 3 113655215 113655215 C T GRAMD1C Missense_Mutation p.A520V 0.45 tolerated(0.31) benign(0.012) TCGA-2W-A8YY-01 3 113665212 113665212 G A GRAMD1C 3'UTR 0.20 TCGA-2W-A8YY-01 3 11374472 11374472 T G ATG7 Missense_Mutation p.V265G 0.40 deleterious(0) probably_damaging(0.934) TCGA-2W-A8YY-01 3 114069795 114069795 G A ZBTB20 Missense_Mutation p.S377L 0.34 tolerated(0.09) possibly_damaging(0.885) TCGA-2W-A8YY-01 3 114099659 114099659 C A ZBTB20 5'UTR 0.46 TCGA-2W-A8YY-01 3 11597532 11597532 C T ATG7 3'UTR 0.28 TCGA-2W-A8YY-01 3 11597855 11597855 C T ATG7 3'UTR 0.40 TCGA-2W-A8YY-01 3 11600873 11600873 C T VGLL4 Silent p.S184S 0.39 TCGA-2W-A8YY-01 3 11849064 11849064 T C TAMM41 Intron 0.36 TCGA-2W-A8YY-01 3 11849257 11849257 A C TAMM41 Intron 0.31 TCGA-2W-A8YY-01 3 11858737 11858737 G A TAMM41 Nonsense_Mutation p.R213* 0.45 TCGA-2W-A8YY-01 3 118870221 118870221 C T C3orf30 3'UTR 0.45 TCGA-2W-A8YY-01 3 118906644 118906644 C T UPK1B Missense_Mutation p.A31V 0.27 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 3 118906728 118906728 C T UPK1B Missense_Mutation p.A59V 0.10 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 3 118935094 118935094 C T B4GALT4 Missense_Mutation p.A299T 0.51 tolerated(0.06) benign(0.018) TCGA-2W-A8YY-01 3 1189631 1189631 A G CNTN6 5'UTR 0.34 TCGA-2W-A8YY-01 3 119132789 119132789 G A ARHGAP31 Silent p.S671S 0.41 TCGA-2W-A8YY-01 3 119134710 119134710 T C ARHGAP31 Missense_Mutation p.S1312P 0.37 tolerated(0.16) probably_damaging(0.998) TCGA-2W-A8YY-01 3 119134804 119134804 G A ARHGAP31 Missense_Mutation p.R1343K 0.48 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 3 119156714 119156714 C T TMEM39A Missense_Mutation p.R271H 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 3 119211289 119211289 T A POGLUT1 3'UTR 0.45 TCGA-2W-A8YY-01 3 119219553 119219553 G T TIMMDC1 Missense_Mutation p.R69I 0.35 deleterious(0.02) benign(0.051) TCGA-2W-A8YY-01 3 119300957 119300957 C A ADPRH Intron 0.19 TCGA-2W-A8YY-01 3 119306602 119306602 G A ADPRH Missense_Mutation p.M317I 0.26 tolerated(0.19) benign(0.01) TCGA-2W-A8YY-01 3 119331956 119331956 G T PLA1A Missense_Mutation p.D219Y 0.21 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 119347704 119347704 C T PLA1A Silent p.V426V 0.11 TCGA-2W-A8YY-01 3 119396086 119396086 G A COX17 Silent p.C24C 0.40 TCGA-2W-A8YY-01 3 119426408 119426408 C T MAATS1 Missense_Mutation p.T120I 0.57 tolerated(0.26) benign(0.002) TCGA-2W-A8YY-01 3 119534197 119534197 C T NR1I2 Missense_Mutation p.P361L 0.19 tolerated(0.19) probably_damaging(1) TCGA-2W-A8YY-01 3 119536045 119536045 A C NR1I2 Missense_Mutation p.I470L 0.17 deleterious_low_confidence(0.04) benign(0.012) TCGA-2W-A8YY-01 3 119720916 119720916 C T GSK3B Missense_Mutation p.V87I 0.36 deleterious(0) possibly_damaging(0.89) TCGA-2W-A8YY-01 3 119900034 119900034 G T GPR156 Missense_Mutation p.L291I 0.38 tolerated(0.08) possibly_damaging(0.746) TCGA-2W-A8YY-01 3 120128467 120128467 A G FSTL1 Missense_Mutation p.I125T 0.47 deleterious(0.01) benign(0.035) TCGA-2W-A8YY-01 3 120365204 120365204 G A HGD Missense_Mutation p.R187W 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 120407057 120407057 G A RABL3 3'UTR 0.35 TCGA-2W-A8YY-01 3 120417335 120417335 G A RABL3 Missense_Mutation p.R157C 0.25 deleterious(0.04) benign(0.04) TCGA-2W-A8YY-01 3 120500331 120500331 C A GTF2E1 3'UTR 0.44 TCGA-2W-A8YY-01 3 121150776 121150776 C T POLQ 3'UTR 0.49 TCGA-2W-A8YY-01 3 121209208 121209208 C T POLQ Missense_Mutation p.R857H 0.35 deleterious(0) possibly_damaging(0.908) TCGA-2W-A8YY-01 3 121339419 121339419 C T FBXO40 5'UTR 0.30 TCGA-2W-A8YY-01 3 121341747 121341747 C T FBXO40 Missense_Mutation p.H491Y 0.19 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 121342100 121342100 C A FBXO40 Silent p.A608A 0.27 TCGA-2W-A8YY-01 3 121491505 121491505 C T IQCB1 Missense_Mutation p.R489Q 0.39 tolerated(0.43) benign(0.004) TCGA-2W-A8YY-01 3 121507245 121507245 C A IQCB1 Missense_Mutation p.E388D 0.39 tolerated(0.12) benign(0.074) TCGA-2W-A8YY-01 3 121720598 121720598 C T ILDR1 Missense_Mutation p.V165I 0.40 deleterious(0) probably_damaging(0.972) TCGA-2W-A8YY-01 3 12195027 12195027 G A TIMP4 Silent p.I221I 0.25 TCGA-2W-A8YY-01 3 121973199 121973199 C T CASR Missense_Mutation p.P55S 0.42 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 3 121994786 121994786 C T CASR Missense_Mutation p.S502F 0.28 deleterious(0.04) probably_damaging(0.961) TCGA-2W-A8YY-01 3 12208808 12208808 G T SYN2 Intron 0.37 TCGA-2W-A8YY-01 3 122121679 122121679 G T FAM162A Missense_Mutation p.R36I 0.36 tolerated(0.55) benign(0.023) TCGA-2W-A8YY-01 3 122126274 122126274 C T FAM162A Intron 0.09 TCGA-2W-A8YY-01 3 122128760 122128760 G A FAM162A 3'UTR 0.29 TCGA-2W-A8YY-01 3 122133439 122133439 C T WDR5B Missense_Mutation p.A313T 0.69 deleterious(0.03) possibly_damaging(0.731) TCGA-2W-A8YY-01 3 122134115 122134115 C T WDR5B Silent p.S87S 0.30 TCGA-2W-A8YY-01 3 122134211 122134211 C T WDR5B Nonsense_Mutation p.W55* 0.41 TCGA-2W-A8YY-01 3 122144002 122144002 C T KPNA1 3'UTR 0.27 TCGA-2W-A8YY-01 3 122156057 122156057 G A KPNA1 Missense_Mutation p.T361M 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-2W-A8YY-01 3 122418566 122418566 A G PARP14 Missense_Mutation p.T389A 0.42 tolerated(0.27) benign(0.006) TCGA-2W-A8YY-01 3 122419908 122419908 C T PARP14 Missense_Mutation p.A836V 0.38 deleterious(0.02) possibly_damaging(0.529) TCGA-2W-A8YY-01 3 122423529 122423529 G T PARP14 Missense_Mutation p.K1158N 0.38 tolerated(0.2) benign(0.004) TCGA-2W-A8YY-01 3 122437787 122437787 C T PARP14 Missense_Mutation p.R1597C 0.21 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 3 122459704 122459704 C T HSPBAP1 Missense_Mutation p.A319T 0.29 deleterious(0.01) benign(0.024) TCGA-2W-A8YY-01 3 122628479 122628479 G A SEMA5B 3'Flank 0.37 TCGA-2W-A8YY-01 3 122641227 122641227 C T SEMA5B Missense_Mutation p.R501H 0.37 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 3 122829826 122829826 G A PDIA5 Silent p.P172P 0.41 TCGA-2W-A8YY-01 3 122864994 122864994 G A PDIA5 Missense_Mutation p.A344T 0.23 deleterious(0.01) possibly_damaging(0.733) TCGA-2W-A8YY-01 3 122880850 122880850 A G PDIA5 3'UTR 0.10 TCGA-2W-A8YY-01 3 123010178 123010178 G A ADCY5 Missense_Mutation p.R1037W 0.50 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 3 123339243 123339243 C T MYLK Intron 0.46 TCGA-2W-A8YY-01 3 123348517 123348517 C T MYLK Intron 0.32 TCGA-2W-A8YY-01 3 123663770 123663770 A G CCDC14 Silent p.S430S 0.39 TCGA-2W-A8YY-01 3 124196155 124196155 C A KALRN Missense_Mutation p.L1387M 0.31 deleterious(0.03) benign(0.006) TCGA-2W-A8YY-01 3 124393250 124393250 G A KALRN Missense_Mutation p.V419M 0.49 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 3 124438106 124438106 T C RP11-71H17.7 5'Flank 0.32 TCGA-2W-A8YY-01 3 124456792 124456792 C T UMPS Missense_Mutation p.R230C 0.33 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 124483261 124483261 G A ITGB5 Nonsense_Mutation p.R761* 0.08 TCGA-2W-A8YY-01 3 124483294 124483294 C T ITGB5 Missense_Mutation p.D750N 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 124492614 124492614 G A ITGB5 Silent p.C613C 0.51 TCGA-2W-A8YY-01 3 124538633 124538633 T C ITGB5 Missense_Mutation p.I331V 0.45 tolerated(0.13) possibly_damaging(0.573) TCGA-2W-A8YY-01 3 124540184 124540184 G A ITGB5 Silent p.N306N 0.37 TCGA-2W-A8YY-01 3 124646789 124646789 G A MUC13 Missense_Mutation p.A34V 0.24 tolerated_low_confidence(0.14) possibly_damaging(0.75) TCGA-2W-A8YY-01 3 124720796 124720796 C T HEG1 Silent p.T1139T 0.31 TCGA-2W-A8YY-01 3 124732205 124732205 G A HEG1 Nonsense_Mutation p.Q740* 0.45 TCGA-2W-A8YY-01 3 124947592 124947592 T C ZNF148 3'UTR 0.42 TCGA-2W-A8YY-01 3 124949621 124949621 C A ZNF148 3'UTR 0.38 TCGA-2W-A8YY-01 3 124949769 124949769 G A ZNF148 3'UTR 0.37 TCGA-2W-A8YY-01 3 124952147 124952147 G A ZNF148 Missense_Mutation p.R475W 0.32 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 3 124952428 124952428 G A ZNF148 Missense_Mutation p.A381V 0.33 tolerated(0.2) benign(0.001) TCGA-2W-A8YY-01 3 125188363 125188363 A G SNX4 Silent p.S263S 0.25 TCGA-2W-A8YY-01 3 125266249 125266249 C T OSBPL11 Splice_Site p.X614_splice 0.63 TCGA-2W-A8YY-01 3 125313546 125313546 G A OSBPL11 Silent p.S33S 0.50 TCGA-2W-A8YY-01 3 12531473 12531473 G A TSEN2 Silent p.E58E 0.46 TCGA-2W-A8YY-01 3 125731577 125731577 A G SLC41A3 Missense_Mutation p.L329P 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 125854397 125854397 G A ALDH1L1 Missense_Mutation p.R495W 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 125876348 125876348 G A ALDH1L1 Silent p.T132T 0.73 TCGA-2W-A8YY-01 3 126070736 126070736 G A KLF15 Missense_Mutation p.R344W 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 126070743 126070743 G A KLF15 Silent p.H341H 0.41 TCGA-2W-A8YY-01 3 12610495 12610495 C T MKRN2 Missense_Mutation p.R50W 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 3 126133005 126133005 C T CCDC37 Missense_Mutation p.R70W 0.43 deleterious(0.01) benign(0.198) TCGA-2W-A8YY-01 3 126138616 126138616 G A CCDC37 Missense_Mutation p.E290K 0.61 tolerated(0.65) benign(0.012) TCGA-2W-A8YY-01 3 126157206 126157206 C T ZXDC 3'UTR 0.41 TCGA-2W-A8YY-01 3 126222894 126222894 C T UROC1 Silent p.R282R 0.37 TCGA-2W-A8YY-01 3 126224817 126224817 C T UROC1 Missense_Mutation p.G214S 0.27 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 126226594 126226594 C T UROC1 Missense_Mutation p.G198E 0.46 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 126260690 126260690 G A CHST13 Missense_Mutation p.V99M 0.43 deleterious(0.02) probably_damaging(0.929) TCGA-2W-A8YY-01 3 126268618 126268618 G T C3orf22 3'UTR 0.26 TCGA-2W-A8YY-01 3 126268761 126268761 C T C3orf22 Missense_Mutation p.A126T 0.33 tolerated(0.76) benign(0) TCGA-2W-A8YY-01 3 126326782 126326782 C T TXNRD3 Missense_Mutation p.G688E 0.38 deleterious(0) possibly_damaging(0.589) TCGA-2W-A8YY-01 3 126445943 126445943 G A CHCHD6 Missense_Mutation p.R37H 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 12647728 12647728 G A RAF1 Nonsense_Mutation p.R218* 0.39 TCGA-2W-A8YY-01 3 126676317 126676317 C T CHCHD6 Nonsense_Mutation p.R209* 0.43 TCGA-2W-A8YY-01 3 126707988 126707988 G A PLXNA1 Silent p.K184K 0.17 TCGA-2W-A8YY-01 3 126710360 126710360 G A PLXNA1 Missense_Mutation p.R443Q 0.35 tolerated(0.49) benign(0.007) TCGA-2W-A8YY-01 3 126710404 126710404 C T PLXNA1 Missense_Mutation p.R458C 0.41 deleterious(0) possibly_damaging(0.713) TCGA-2W-A8YY-01 3 126722314 126722314 G A PLXNA1 Splice_Site p.X506_splice 0.31 TCGA-2W-A8YY-01 3 126724057 126724057 G A PLXNA1 Missense_Mutation p.R623Q 0.30 tolerated(0.33) benign(0.002) TCGA-2W-A8YY-01 3 126730835 126730835 A G PLXNA1 Missense_Mutation p.Y716C 0.21 deleterious(0) possibly_damaging(0.867) TCGA-2W-A8YY-01 3 126733447 126733447 G T PLXNA1 Nonsense_Mutation p.E911* 0.35 TCGA-2W-A8YY-01 3 126748856 126748856 C T PLXNA1 Silent p.R1670R 0.19 TCGA-2W-A8YY-01 3 126752948 126752948 C T PLXNA1 3'UTR 0.34 TCGA-2W-A8YY-01 3 126754485 126754485 C T PLXNA1 3'UTR 0.38 TCGA-2W-A8YY-01 3 126755000 126755000 C T PLXNA1 3'UTR 0.33 TCGA-2W-A8YY-01 3 126916402 126916402 C T C3orf56 3'UTR 0.50 TCGA-2W-A8YY-01 3 127294342 127294342 C A TPRA1 Missense_Mutation p.R226M 0.23 tolerated(0.07) probably_damaging(0.954) TCGA-2W-A8YY-01 3 127323979 127323979 G A MCM2 Missense_Mutation p.R218H 0.31 deleterious(0) possibly_damaging(0.701) TCGA-2W-A8YY-01 3 127327267 127327267 C T MCM2 Missense_Mutation p.P382S 0.40 deleterious(0) possibly_damaging(0.847) TCGA-2W-A8YY-01 3 127390318 127390318 G A PODXL2 Silent p.A489A 0.30 TCGA-2W-A8YY-01 3 127398997 127398997 G A ABTB1 Missense_Mutation p.C400Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 3 127409409 127409409 C T MGLL 3'UTR 0.48 TCGA-2W-A8YY-01 3 127410878 127410878 T C MGLL 3'UTR 0.47 TCGA-2W-A8YY-01 3 127413950 127413950 T C MGLL Silent p.S228S 0.23 TCGA-2W-A8YY-01 3 127705059 127705059 T C KBTBD12 3'UTR 0.41 TCGA-2W-A8YY-01 3 128339335 128339335 C T RPN1 Silent p.T581T 0.37 TCGA-2W-A8YY-01 3 128341182 128341182 C A RPN1 Missense_Mutation p.R489I 0.30 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 3 128369610 128369610 G T RPN1 Missense_Mutation p.L12M 0.28 tolerated(0.09) unknown(0) TCGA-2W-A8YY-01 3 128526398 128526398 C T RAB7A Missense_Mutation p.R138W 0.25 deleterious(0) possibly_damaging(0.854) TCGA-2W-A8YY-01 3 128533049 128533049 G T RAB7A 3'UTR 0.36 TCGA-2W-A8YY-01 3 128584274 128584274 C T RP11-723O4.9 5'Flank 0.44 TCGA-2W-A8YY-01 3 128627045 128627045 C T ACAD9 Silent p.L432L 0.40 TCGA-2W-A8YY-01 3 128809400 128809400 G A RAB43 3'UTR 0.37 TCGA-2W-A8YY-01 3 128971729 128971729 G A COPG1 Missense_Mutation p.R85H 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 128996275 128996275 G T COPG1 3'UTR 0.11 TCGA-2W-A8YY-01 3 129156690 129156690 C T MBD4 Missense_Mutation p.A70T 0.33 deleterious(0.04) benign(0.072) TCGA-2W-A8YY-01 3 129159099 129159099 C T IFT122 5'UTR 0.38 TCGA-2W-A8YY-01 3 129195327 129195327 C T IFT122 Missense_Mutation p.A380V 0.13 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 3 129214380 129214380 A G IFT122 Missense_Mutation p.Y764C 0.29 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 3 129252641 129252641 G A RHO 3'UTR 0.42 TCGA-2W-A8YY-01 3 129290411 129290411 G A PLXND1 Missense_Mutation p.R1093C 0.38 deleterious(0.02) possibly_damaging(0.773) TCGA-2W-A8YY-01 3 129368627 129368627 C T TMCC1 3'UTR 0.25 TCGA-2W-A8YY-01 3 129389180 129389180 G A TMCC1 Nonsense_Mutation p.R502* 0.12 TCGA-2W-A8YY-01 3 12944317 12944317 G A IQSEC1 Nonsense_Mutation p.R935* 0.23 TCGA-2W-A8YY-01 3 12953225 12953225 T C IQSEC1 Missense_Mutation p.T788A 0.37 deleterious(0.04) benign(0.054) TCGA-2W-A8YY-01 3 129546811 129546811 G A TMCC1 Silent p.I137I 0.32 TCGA-2W-A8YY-01 3 12954960 12954960 G A IQSEC1 Nonsense_Mutation p.R776* 0.38 TCGA-2W-A8YY-01 3 129695990 129695990 G T TRH Missense_Mutation p.Q220H 0.50 tolerated(0.3) possibly_damaging(0.789) TCGA-2W-A8YY-01 3 129696007 129696007 G A TRH Missense_Mutation p.R226Q 0.33 deleterious(0.04) benign(0.037) TCGA-2W-A8YY-01 3 130098364 130098364 C T COL6A5 Silent p.F257F 0.45 TCGA-2W-A8YY-01 3 130103676 130103676 C A COL6A5 Missense_Mutation p.H444N 0.48 deleterious(0) benign(0.334) TCGA-2W-A8YY-01 3 130103781 130103781 G A COL6A5 Missense_Mutation p.V479I 0.40 tolerated(0.07) possibly_damaging(0.776) TCGA-2W-A8YY-01 3 130110337 130110337 G A COL6A5 Missense_Mutation p.R911H 0.57 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 3 130116708 130116708 G A COL6A5 Missense_Mutation p.A1284T 0.36 tolerated(0.17) benign(0.035) TCGA-2W-A8YY-01 3 130119884 130119884 C T COL6A5 Missense_Mutation p.A1334V 0.39 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 3 130159373 130159373 G T COL6A5 Missense_Mutation p.W2064L 0.32 deleterious(0.01) possibly_damaging(0.682) TCGA-2W-A8YY-01 3 130282153 130282153 C T COL6A6 Silent p.G102G 0.33 TCGA-2W-A8YY-01 3 130308007 130308007 C A COL6A6 Missense_Mutation p.P1400H 0.41 tolerated(0.17) probably_damaging(0.938) TCGA-2W-A8YY-01 3 130377567 130377567 C T COL6A6 Silent p.A1927A 0.33 TCGA-2W-A8YY-01 3 130380774 130380774 C T COL6A6 Missense_Mutation p.R2042C 0.41 tolerated(0.14) probably_damaging(0.922) TCGA-2W-A8YY-01 3 130424565 130424565 T C PIK3R4 Silent p.L924L 0.11 TCGA-2W-A8YY-01 3 130442311 130442311 C A PIK3R4 Missense_Mutation p.C643F 0.41 deleterious(0.05) possibly_damaging(0.798) TCGA-2W-A8YY-01 3 130672712 130672712 G A ATP2C1 Silent p.T227T 0.45 TCGA-2W-A8YY-01 3 130673870 130673870 A G ATP2C1 Silent p.G268G 0.30 TCGA-2W-A8YY-01 3 130715631 130715631 C T ATP2C1 Missense_Mutation p.P779L 0.45 deleterious(0) probably_damaging(0.96) TCGA-2W-A8YY-01 3 130717163 130717163 G A ATP2C1 Missense_Mutation p.R840Q 0.43 deleterious(0) possibly_damaging(0.576) TCGA-2W-A8YY-01 3 130717167 130717167 C T ATP2C1 Silent p.D841D 0.42 TCGA-2W-A8YY-01 3 130743396 130743396 C T ASTE1 Missense_Mutation p.R252K 0.45 tolerated(0.83) benign(0.062) TCGA-2W-A8YY-01 3 130743691 130743691 A G ASTE1 Missense_Mutation p.C154R 0.22 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 130871315 130871315 T G NEK11 Missense_Mutation p.I244S 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 130887748 130887748 C T NEK11 Silent p.D417D 0.16 TCGA-2W-A8YY-01 3 131101438 131101438 G A NUDT16 3'UTR 0.29 TCGA-2W-A8YY-01 3 132211260 132211260 G A DNAJC13 Missense_Mutation p.R1209H 0.44 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 3 132230085 132230085 C T DNAJC13 Missense_Mutation p.P1764S 0.37 tolerated(0.08) benign(0.318) TCGA-2W-A8YY-01 3 132298349 132298349 T C ACAD11 Missense_Mutation p.T559A 0.42 tolerated(0.74) benign(0) TCGA-2W-A8YY-01 3 132416137 132416137 G A NPHP3 Silent p.C685C 0.21 TCGA-2W-A8YY-01 3 133307895 133307895 A C CDV3 3'UTR 0.32 TCGA-2W-A8YY-01 3 133339065 133339065 G A TOPBP1 Missense_Mutation p.A1102V 0.38 tolerated(0.09) benign(0.008) TCGA-2W-A8YY-01 3 133342976 133342976 G A TOPBP1 Missense_Mutation p.R950W 0.25 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 133380629 133380629 G A TOPBP1 5'UTR 0.44 TCGA-2W-A8YY-01 3 133485236 133485236 C T TF Missense_Mutation p.P482L 0.51 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 133535721 133535721 G T SRPRB Splice_Site p.X183_splice 0.17 TCGA-2W-A8YY-01 3 133614260 133614260 C G RAB6B Silent p.V17V 0.29 TCGA-2W-A8YY-01 3 133647240 133647240 G T C3orf36 Missense_Mutation p.F136L 0.36 deleterious_low_confidence(0.04) benign(0.294) TCGA-2W-A8YY-01 3 133648317 133648317 C T C3orf36 5'UTR 0.32 TCGA-2W-A8YY-01 3 133653462 133653463 - A SLCO2A1 3'UTR 0.24 TCGA-2W-A8YY-01 3 133663981 133663981 G A SLCO2A1 Silent p.G473G 0.24 TCGA-2W-A8YY-01 3 133698411 133698411 C T SLCO2A1 Missense_Mutation p.A50T 0.34 deleterious(0.04) probably_damaging(0.924) TCGA-2W-A8YY-01 3 133941370 133941370 T G RYK Missense_Mutation p.E80D 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-2W-A8YY-01 3 13399829 13399829 C T NUP210 Missense_Mutation p.V741M 0.41 tolerated(0.28) benign(0.069) TCGA-2W-A8YY-01 3 13407568 13407568 G A NUP210 Missense_Mutation p.H604Y 0.12 tolerated(0.11) benign(0.001) TCGA-2W-A8YY-01 3 13420474 13420474 C T NUP210 Missense_Mutation p.R328H 0.38 tolerated(0.93) possibly_damaging(0.815) TCGA-2W-A8YY-01 3 134270825 134270825 G A CEP63 Missense_Mutation p.V480M 0.33 deleterious(0.01) benign(0.237) TCGA-2W-A8YY-01 3 134898723 134898723 A G EPHB1 Missense_Mutation p.Y594C 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 134911580 134911580 G A EPHB1 Missense_Mutation p.R682H 0.39 tolerated(0.46) benign(0.021) TCGA-2W-A8YY-01 3 135864606 135864606 T C PPP2R3A 3'UTR 0.37 TCGA-2W-A8YY-01 3 135866162 135866162 C T PPP2R3A 3'UTR 0.36 TCGA-2W-A8YY-01 3 135866244 135866244 C T PPP2R3A 3'UTR 0.43 TCGA-2W-A8YY-01 3 135869029 135869030 - A MSL2 3'UTR 0.43 TCGA-2W-A8YY-01 3 135871450 135871450 C A MSL2 Missense_Mutation p.E91D 0.39 deleterious(0.05) possibly_damaging(0.832) TCGA-2W-A8YY-01 3 136052346 136052346 C T PCCB 3'Flank 0.35 TCGA-2W-A8YY-01 3 136059349 136059349 G A STAG1 Missense_Mutation p.T1219I 0.43 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-2W-A8YY-01 3 136574306 136574306 T C SLC35G2 Missense_Mutation p.V335A 0.35 tolerated(0.26) possibly_damaging(0.901) TCGA-2W-A8YY-01 3 136665007 136665007 G A NCK1 Missense_Mutation p.R270K 0.35 tolerated(0.98) benign(0.004) TCGA-2W-A8YY-01 3 13672223 13672223 G A FBLN2 Missense_Mutation p.R998H 0.42 tolerated(0.13) probably_damaging(0.975) TCGA-2W-A8YY-01 3 137717664 137717664 G A CLDN18 5'UTR 0.46 TCGA-2W-A8YY-01 3 137729133 137729133 C T CLDN18 Silent p.I22I 0.35 TCGA-2W-A8YY-01 3 137787073 137787073 C T DZIP1L Silent p.L584L 0.34 TCGA-2W-A8YY-01 3 137843320 137843320 C T A4GNT Missense_Mutation p.R270H 0.45 deleterious(0.01) possibly_damaging(0.908) TCGA-2W-A8YY-01 3 137849765 137849765 C T A4GNT Missense_Mutation p.D112N 0.40 tolerated(0.29) benign(0.012) TCGA-2W-A8YY-01 3 137886104 137886104 C A DBR1 Missense_Mutation p.R178I 0.33 deleterious(0) benign(0.309) TCGA-2W-A8YY-01 3 137890480 137890480 C T DBR1 Missense_Mutation p.R133Q 0.42 tolerated(0.3) benign(0.067) TCGA-2W-A8YY-01 3 137982647 137982647 C T ARMC8 Missense_Mutation p.R387W 0.37 deleterious(0) possibly_damaging(0.899) TCGA-2W-A8YY-01 3 138023751 138023751 C T NME9 Missense_Mutation p.R191H 0.37 tolerated(0.35) possibly_damaging(0.616) TCGA-2W-A8YY-01 3 13860466 13860466 C T WNT7A Missense_Mutation p.R342H 0.53 deleterious(0.01) probably_damaging(0.932) TCGA-2W-A8YY-01 3 138665383 138665383 G A FOXL2 Missense_Mutation p.A61V 0.29 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 3 138724502 138724502 G - PRR23A Frame_Shift_Del p.N204Tfs*128 0.30 TCGA-2W-A8YY-01 3 138724854 138724854 G A PRR23A Missense_Mutation p.S86L 0.41 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 3 138738637 138738637 G T PRR23B 3'UTR 0.41 TCGA-2W-A8YY-01 3 139257633 139257633 C T RBP1 Missense_Mutation p.R143H 0.43 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 3 139280082 139280082 C T NMNAT3 Missense_Mutation p.A140T 0.47 tolerated(0.06) benign(0.027) TCGA-2W-A8YY-01 3 140178553 140178553 C T CLSTN2 Silent p.G388G 0.46 TCGA-2W-A8YY-01 3 140695451 140695451 C T SLC25A36 3'UTR 0.48 TCGA-2W-A8YY-01 3 140866748 140866748 C T SPSB4 3'UTR 0.31 TCGA-2W-A8YY-01 3 140978971 140978971 T C ACPL2 5'UTR 0.47 TCGA-2W-A8YY-01 3 141105723 141105723 G A ZBTB38 5'Flank 0.52 TCGA-2W-A8YY-01 3 141165257 141165257 G A ZBTB38 3'UTR 0.19 TCGA-2W-A8YY-01 3 141166093 141166093 C A ZBTB38 3'UTR 0.39 TCGA-2W-A8YY-01 3 141326522 141326522 A G RASA2 Missense_Mutation p.K646E 0.37 tolerated(0.2) probably_damaging(0.996) TCGA-2W-A8YY-01 3 141328265 141328265 T C RASA2 Silent p.G743G 0.12 TCGA-2W-A8YY-01 3 141328910 141328910 T C RASA2 Splice_Site p.X840_splice 0.45 TCGA-2W-A8YY-01 3 141497133 141497133 G A GRK7 Missense_Mutation p.D3N 0.29 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 3 141499568 141499568 T C GRK7 Missense_Mutation p.V322A 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 3 141719186 141719186 C A TFDP2 Intron 0.43 TCGA-2W-A8YY-01 3 14172338 14172338 C T TMEM43 Missense_Mutation p.T60M 0.28 tolerated(0.07) possibly_damaging(0.791) TCGA-2W-A8YY-01 3 141820585 141820585 C T TFDP2 Missense_Mutation p.A3T 0.20 deleterious(0.03) benign(0.002) TCGA-2W-A8YY-01 3 141889251 141889251 C A GK5 Missense_Mutation p.D453Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 3 14200136 14200136 C T XPC Missense_Mutation p.R416H 0.58 tolerated(0.15) benign(0.004) TCGA-2W-A8YY-01 3 142151594 142151594 G A XRN1 Missense_Mutation p.R73C 0.35 deleterious(0) benign(0.32) TCGA-2W-A8YY-01 3 142166750 142166750 G A XRN1 Missense_Mutation p.R13W 0.41 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 3 142268984 142268984 C T ATR Missense_Mutation p.R989H 0.41 tolerated(0.17) possibly_damaging(0.893) TCGA-2W-A8YY-01 3 142383065 142383066 - T PLS1 5'UTR 0.27 TCGA-2W-A8YY-01 3 142431254 142431254 T C PLS1 3'UTR 0.34 TCGA-2W-A8YY-01 3 142681386 142681386 C T PAQR9 Missense_Mutation p.D265N 0.38 tolerated(0.35) probably_damaging(0.994) TCGA-2W-A8YY-01 3 142735146 142735146 T C U2SURP Silent p.A123A 0.52 TCGA-2W-A8YY-01 3 142747489 142747489 G T U2SURP Splice_Site p.X537_splice 0.42 TCGA-2W-A8YY-01 3 142751754 142751754 C T U2SURP Missense_Mutation p.S580L 0.17 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 3 142840475 142840475 G A CHST2 Missense_Mutation p.G273R 0.39 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 3 142841303 142841303 C T CHST2 3'UTR 0.44 TCGA-2W-A8YY-01 3 142984284 142984284 G T SLC9A9 3'UTR 0.52 TCGA-2W-A8YY-01 3 142984382 142984382 G T SLC9A9 3'UTR 0.31 TCGA-2W-A8YY-01 3 142985421 142985421 T G SLC9A9 3'UTR 0.36 TCGA-2W-A8YY-01 3 143214265 143214265 G A SLC9A9 Missense_Mutation p.A372V 0.38 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 3 143567068 143567068 G A SLC9A9 Missense_Mutation p.L33F 0.35 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 3 14523238 14523238 G T SLC6A6 Silent p.V537V 0.40 TCGA-2W-A8YY-01 3 14528708 14528708 T C SLC6A6 3'UTR 0.42 TCGA-2W-A8YY-01 3 14528822 14528822 G A SLC6A6 3'UTR 0.18 TCGA-2W-A8YY-01 3 14558681 14558681 G A GRIP2 RNA 0.40 TCGA-2W-A8YY-01 3 145788287 145788287 C A PLOD2 3'UTR 0.42 TCGA-2W-A8YY-01 3 145788416 145788416 C A PLOD2 3'UTR 0.39 TCGA-2W-A8YY-01 3 145795649 145795649 C T PLOD2 Silent p.K521K 0.26 TCGA-2W-A8YY-01 3 145828090 145828090 G A PLOD2 Missense_Mutation p.R162C 0.26 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 3 145917657 145917657 C T PLSCR4 Missense_Mutation p.M189I 0.16 tolerated(0.06) benign(0.009) TCGA-2W-A8YY-01 3 145917799 145917799 C A PLSCR4 Missense_Mutation p.R142I 0.34 deleterious(0.01) possibly_damaging(0.701) TCGA-2W-A8YY-01 3 146239690 146239690 C T PLSCR1 Missense_Mutation p.G169D 0.40 tolerated(0.29) benign(0.261) TCGA-2W-A8YY-01 3 147106170 147106170 T G ZIC4 3'UTR 0.39 TCGA-2W-A8YY-01 3 147106594 147106594 G - ZIC4 3'UTR 0.29 TCGA-2W-A8YY-01 3 147124364 147124364 G A ZIC4 5'Flank 0.47 TCGA-2W-A8YY-01 3 147130325 147130325 G A ZIC1 Missense_Mutation p.E335K 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-2W-A8YY-01 3 148558744 148558744 C T CPB1 Silent p.R152R 0.30 TCGA-2W-A8YY-01 3 148756936 148756936 T - HLTF Frame_Shift_Del p.N899Tfs*9 0.24 TCGA-2W-A8YY-01 3 148781227 148781227 C T HLTF Missense_Mutation p.R384H 0.56 tolerated(0.57) benign(0.009) TCGA-2W-A8YY-01 3 148858170 148858170 T C HPS3 Silent p.A199A 0.47 TCGA-2W-A8YY-01 3 148884909 148884909 T C HPS3 Missense_Mutation p.V893A 0.19 deleterious(0.03) possibly_damaging(0.758) TCGA-2W-A8YY-01 3 148905842 148905842 G A CP Missense_Mutation p.H621Y 0.43 tolerated(0.1) benign(0.262) TCGA-2W-A8YY-01 3 148930408 148930408 T C CP Missense_Mutation p.Y75C 0.38 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 3 14905754 14905754 G A FGD5 Missense_Mutation p.S882N 0.34 tolerated(0.07) benign(0.01) TCGA-2W-A8YY-01 3 14952388 14952388 G A FGD5 Silent p.T1119T 0.31 TCGA-2W-A8YY-01 3 14960294 14960294 G A FGD5 Missense_Mutation p.A1175T 0.44 tolerated(0.07) probably_damaging(0.994) TCGA-2W-A8YY-01 3 149678585 149678585 G A RNF13 Silent p.V280V 0.21 TCGA-2W-A8YY-01 3 149683349 149683349 G A PFN2 3'UTR 0.45 TCGA-2W-A8YY-01 3 150126944 150126944 A C TSC22D2 5'UTR 0.46 TCGA-2W-A8YY-01 3 150127042 150127042 G A TSC22D2 5'UTR 0.39 TCGA-2W-A8YY-01 3 150128823 150128823 G A TSC22D2 Silent p.A562A 0.26 TCGA-2W-A8YY-01 3 150177006 150177006 C T TSC22D2 3'UTR 0.29 TCGA-2W-A8YY-01 3 150177210 150177210 C T TSC22D2 3'UTR 0.37 TCGA-2W-A8YY-01 3 150177461 150177461 C A TSC22D2 3'UTR 0.47 TCGA-2W-A8YY-01 3 150264943 150264943 G A SERP1 5'UTR 0.28 TCGA-2W-A8YY-01 3 150289856 150289856 C A EIF2A Missense_Mutation p.P308H 0.38 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 3 150398621 150398621 G A FAM194A Missense_Mutation p.P327S 0.52 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 3 150570383 150570383 G A CLRN1-AS1 RNA 0.62 TCGA-2W-A8YY-01 3 15084406 15084406 T - NR2C2 Frame_Shift_Del p.F582Lfs*10 0.38 TCGA-2W-A8YY-01 3 150911527 150911527 A G MED12L Intron 0.29 TCGA-2W-A8YY-01 3 151012145 151012145 C A GPR87 Nonsense_Mutation p.E297* 0.23 TCGA-2W-A8YY-01 3 151045825 151045825 C T P2RY13 Missense_Mutation p.S340N 0.38 tolerated(0.24) benign(0.009) TCGA-2W-A8YY-01 3 151105845 151105845 C T MED12L Missense_Mutation p.S1744F 0.49 deleterious(0.01) probably_damaging(0.991) TCGA-2W-A8YY-01 3 151112543 151112543 C T MED12L Missense_Mutation p.P1868L 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.668) TCGA-2W-A8YY-01 3 15112162 15112162 C T ZFYVE20 3'UTR 0.19 TCGA-2W-A8YY-01 3 151127075 151127075 G A MED12L Silent p.R1920R 0.30 TCGA-2W-A8YY-01 3 151129147 151129147 C A MED12L Missense_Mutation p.L1963M 0.20 tolerated_low_confidence(0.24) probably_damaging(0.987) TCGA-2W-A8YY-01 3 151155222 151155222 C T IGSF10 Missense_Mutation p.G2376D 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 3 15116089 15116089 G A ZFYVE20 Missense_Mutation p.R519W 0.53 deleterious_low_confidence(0.02) benign(0.016) TCGA-2W-A8YY-01 3 151162938 151162938 C T IGSF10 Missense_Mutation p.D1611N 0.29 tolerated(0.21) benign(0.01) TCGA-2W-A8YY-01 3 151164164 151164164 T C IGSF10 Missense_Mutation p.K1202R 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 3 151166250 151166250 C T IGSF10 Missense_Mutation p.V507M 0.10 deleterious(0.02) benign(0.119) TCGA-2W-A8YY-01 3 152018136 152018136 G A MBNL1 Missense_Mutation p.A52T 0.43 deleterious(0) possibly_damaging(0.448) TCGA-2W-A8YY-01 3 15216295 15216295 G T COL6A4P1 RNA 0.28 TCGA-2W-A8YY-01 3 152182261 152182261 G A MBNL1 3'UTR 0.31 TCGA-2W-A8YY-01 3 152555046 152555047 - C P2RY1 3'UTR 0.33 TCGA-2W-A8YY-01 3 15270480 15270480 G T CAPN7 Splice_Site p.X285_splice 0.52 TCGA-2W-A8YY-01 3 152881519 152881519 G A RAP2B 3'UTR 0.45 TCGA-2W-A8YY-01 3 152884316 152884317 - T RAP2B 3'UTR 0.29 TCGA-2W-A8YY-01 3 152884550 152884550 G A RAP2B 3'UTR 0.41 TCGA-2W-A8YY-01 3 15300360 15300360 T C SH3BP5 Silent p.K289K 0.42 TCGA-2W-A8YY-01 3 15301247 15301247 G A SH3BP5 Intron 0.61 TCGA-2W-A8YY-01 3 153840311 153840311 G A ARHGEF26 Missense_Mutation p.G177D 0.43 tolerated_low_confidence(0.13) benign(0.28) TCGA-2W-A8YY-01 3 153840685 153840685 G A ARHGEF26 Missense_Mutation p.V302M 0.47 tolerated(0.18) benign(0.007) TCGA-2W-A8YY-01 3 153935665 153935665 G A ARHGEF26 Missense_Mutation p.R618Q 0.37 deleterious(0.01) benign(0.258) TCGA-2W-A8YY-01 3 15468085 15468085 G A METTL6 5'UTR 0.34 TCGA-2W-A8YY-01 3 15473605 15473605 A G EAF1 Silent p.P70P 0.17 TCGA-2W-A8YY-01 3 15484036 15484036 G A EAF1 3'UTR 0.37 TCGA-2W-A8YY-01 3 15491986 15491986 T C COLQ 3'UTR 0.37 TCGA-2W-A8YY-01 3 155198956 155198956 C T PLCH1 Missense_Mutation p.R1628H 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 155311845 155311845 C T PLCH1 Missense_Mutation p.D107N 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 3 155547676 155547676 A C SLC33A1 Missense_Mutation p.M428R 0.12 deleterious(0) possibly_damaging(0.877) TCGA-2W-A8YY-01 3 15563081 15563081 G T COLQ Missense_Mutation p.L18I 0.39 tolerated_low_confidence(0.39) benign(0.038) TCGA-2W-A8YY-01 3 15563149 15563149 C T COLQ 5'UTR 0.16 TCGA-2W-A8YY-01 3 156009582 156009582 A G KCNAB1 Intron 0.38 TCGA-2W-A8YY-01 3 156009624 156009624 G A KCNAB1 Intron 0.51 TCGA-2W-A8YY-01 3 15604876 15604876 G A HACL1 Missense_Mutation p.R565W 0.31 deleterious(0) possibly_damaging(0.616) TCGA-2W-A8YY-01 3 156254499 156254499 G A KCNAB1 Missense_Mutation p.R408H 0.30 deleterious(0.01) possibly_damaging(0.532) TCGA-2W-A8YY-01 3 156255647 156255647 T C KCNAB1 3'UTR 0.37 TCGA-2W-A8YY-01 3 156413664 156413664 G A TIPARP Missense_Mutation p.R366Q 0.27 tolerated(0.18) benign(0.013) TCGA-2W-A8YY-01 3 156423536 156423536 G T TIPARP 3'UTR 0.23 TCGA-2W-A8YY-01 3 15677084 15677084 A G BTD Silent p.P66P 0.24 TCGA-2W-A8YY-01 3 15683504 15683504 G A BTD Silent p.P133P 0.41 TCGA-2W-A8YY-01 3 156874872 156874872 G A CCNL1 Intron 0.32 TCGA-2W-A8YY-01 3 157161067 157161067 G T PTX3 3'UTR 0.10 TCGA-2W-A8YY-01 3 15717495 15717495 G A ANKRD28 Missense_Mutation p.P929S 0.20 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 3 15737728 15737728 G A ANKRD28 Silent p.N494N 0.36 TCGA-2W-A8YY-01 3 15755057 15755057 A G ANKRD28 Silent p.I359I 0.55 TCGA-2W-A8YY-01 3 158376718 158376718 G A GFM1 Missense_Mutation p.R364Q 0.29 tolerated(0.22) benign(0.149) TCGA-2W-A8YY-01 3 158386844 158386844 G A LXN Nonsense_Mutation p.Q150* 0.24 TCGA-2W-A8YY-01 3 158428567 158428567 C A RARRES1 Missense_Mutation p.M165I 0.40 tolerated(0.3) benign(0.048) TCGA-2W-A8YY-01 3 158539925 158539925 C T MFSD1 Missense_Mutation p.A407V 0.43 tolerated(0.06) benign(0.312) TCGA-2W-A8YY-01 3 160156878 160156878 T G TRIM59 Missense_Mutation p.N32H 0.26 deleterious(0.01) possibly_damaging(0.841) TCGA-2W-A8YY-01 3 160217962 160217962 T A KPNA4 3'UTR 0.48 TCGA-2W-A8YY-01 3 160396067 160396067 A C ARL14 3'UTR 0.33 TCGA-2W-A8YY-01 3 160783286 160783286 G A PPM1L Missense_Mutation p.A224T 0.49 tolerated(0.12) possibly_damaging(0.545) TCGA-2W-A8YY-01 3 160803807 160803807 A G B3GALNT1 Missense_Mutation p.S246P 0.31 deleterious(0.02) possibly_damaging(0.898) TCGA-2W-A8YY-01 3 161063444 161063444 G A SPTSSB 3'UTR 0.19 TCGA-2W-A8YY-01 3 16242244 16242244 C A GALNT15 Silent p.T275T 0.43 TCGA-2W-A8YY-01 3 16261022 16261022 G T GALNT15 Missense_Mutation p.R502M 0.33 deleterious(0.01) benign(0.098) TCGA-2W-A8YY-01 3 16269595 16269595 A C GALNT15 3'UTR 0.45 TCGA-2W-A8YY-01 3 16343266 16343266 G A OXNAD1 Missense_Mutation p.R189Q 0.41 tolerated(0.18) benign(0.034) TCGA-2W-A8YY-01 3 16358244 16358244 C T RFTN1 3'UTR 0.38 TCGA-2W-A8YY-01 3 16419298 16419298 T C RFTN1 Silent p.P251P 0.36 TCGA-2W-A8YY-01 3 164754263 164754263 C T SI Missense_Mutation p.R810H 0.32 deleterious(0) benign(0.202) TCGA-2W-A8YY-01 3 164783108 164783108 G A SI Missense_Mutation p.R250C 0.29 deleterious(0) probably_damaging(0.929) TCGA-2W-A8YY-01 3 164783162 164783162 G A SI Missense_Mutation p.R232C 0.29 deleterious(0.01) possibly_damaging(0.624) TCGA-2W-A8YY-01 3 16628950 16628950 G T DAZL 3'UTR 0.33 TCGA-2W-A8YY-01 3 16629303 16629303 C A DAZL 3'UTR 0.40 TCGA-2W-A8YY-01 3 167023481 167023481 G A ZBBX Silent p.L559L 0.26 TCGA-2W-A8YY-01 3 167031775 167031775 T C ZBBX Silent p.K468K 0.08 TCGA-2W-A8YY-01 3 167189490 167189490 T G SERPINI2 Missense_Mutation p.I45L 0.12 tolerated(0.07) possibly_damaging(0.566) TCGA-2W-A8YY-01 3 167761265 167761265 C T GOLIM4 Missense_Mutation p.R140H 0.42 deleterious(0.03) probably_damaging(0.997) TCGA-2W-A8YY-01 3 168802512 168802512 G A MECOM 3'UTR 0.23 TCGA-2W-A8YY-01 3 169381319 169381319 C T MECOM 5'Flank 0.42 TCGA-2W-A8YY-01 3 169524692 169524692 G T LRRC34 Missense_Mutation p.L158I 0.26 deleterious(0.04) possibly_damaging(0.868) TCGA-2W-A8YY-01 3 169642909 169642909 G A SAMD7 Missense_Mutation p.R92Q 0.09 deleterious(0.02) possibly_damaging(0.47) TCGA-2W-A8YY-01 3 169890478 169890478 C T PHC3 Missense_Mutation p.R68Q 0.32 deleterious(0) probably_damaging(0.975) TCGA-2W-A8YY-01 3 169977771 169977771 G A PRKCI Missense_Mutation p.V80I 0.31 tolerated(1) probably_damaging(0.992) TCGA-2W-A8YY-01 3 170023285 170023285 A C PRKCI 3'UTR 0.42 TCGA-2W-A8YY-01 3 170079035 170079035 C T SKIL Missense_Mutation p.H306Y 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 170110061 170110061 G T SKIL Missense_Mutation p.R637S 0.38 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 3 170137079 170137079 G A CLDN11 Silent p.P75P 0.39 TCGA-2W-A8YY-01 3 170198095 170198095 G A SLC7A14 Missense_Mutation p.A659V 0.41 tolerated(0.16) benign(0.025) TCGA-2W-A8YY-01 3 170244441 170244441 G A SLC7A14 Silent p.A95A 0.47 TCGA-2W-A8YY-01 3 17056204 17056204 C T PLCL2 Missense_Mutation p.A814V 0.37 deleterious(0.03) benign(0.201) TCGA-2W-A8YY-01 3 17056282 17056282 G A PLCL2 Missense_Mutation p.R840H 0.33 deleterious(0.02) benign(0.181) TCGA-2W-A8YY-01 3 170606275 170606275 T C EIF5A2 3'UTR 0.35 TCGA-2W-A8YY-01 3 170607665 170607665 A - EIF5A2 3'UTR 0.36 TCGA-2W-A8YY-01 3 170716953 170716953 T C SLC2A2 Silent p.V357V 0.29 TCGA-2W-A8YY-01 3 170879102 170879102 C T TNIK Missense_Mutation p.G325R 0.26 deleterious(0) unknown(0) TCGA-2W-A8YY-01 3 171417554 171417554 C A PLD1 Missense_Mutation p.C403F 0.35 tolerated(0.65) benign(0.074) TCGA-2W-A8YY-01 3 17208398 17208398 G A TBC1D5 Missense_Mutation p.S674F 0.32 deleterious(0) possibly_damaging(0.883) TCGA-2W-A8YY-01 3 172114975 172114975 A G FNDC3B Missense_Mutation p.T1109A 0.36 tolerated(0.14) benign(0.005) TCGA-2W-A8YY-01 3 172350592 172350592 G A NCEH1 3'UTR 0.48 TCGA-2W-A8YY-01 3 172479474 172479474 G A ECT2 Splice_Site p.X253_splice 0.41 TCGA-2W-A8YY-01 3 172499984 172499984 A G ECT2 Missense_Mutation p.D527G 0.43 tolerated(0.05) benign(0.101) TCGA-2W-A8YY-01 3 172538299 172538299 A G ECT2 3'UTR 0.52 TCGA-2W-A8YY-01 3 17279820 17279820 G A TBC1D5 Missense_Mutation p.P475S 0.33 tolerated(0.99) benign(0.004) TCGA-2W-A8YY-01 3 173998768 173998768 G A NLGN1 Missense_Mutation p.R716H 0.43 deleterious(0.03) probably_damaging(0.993) TCGA-2W-A8YY-01 3 173999335 173999335 G T NLGN1 3'UTR 0.40 TCGA-2W-A8YY-01 3 175165131 175165131 C T NAALADL2 Missense_Mutation p.A402V 0.39 tolerated(0.47) benign(0.001) TCGA-2W-A8YY-01 3 176739489 176739489 T G TBL1XR1 3'UTR 0.31 TCGA-2W-A8YY-01 3 176740804 176740805 - A TBL1XR1 3'UTR 0.30 TCGA-2W-A8YY-01 3 176741506 176741506 G T TBL1XR1 3'UTR 0.33 TCGA-2W-A8YY-01 3 176750883 176750883 C T TBL1XR1 Missense_Mutation p.R431Q 0.32 tolerated(0.45) benign(0.014) TCGA-2W-A8YY-01 3 178525219 178525219 C T KCNMB2 Missense_Mutation p.R8W 0.42 deleterious(0) possibly_damaging(0.865) TCGA-2W-A8YY-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.47 tolerated(0.06) probably_damaging(0.998) TCGA-2W-A8YY-01 3 178928017 178928017 A G PIK3CA Missense_Mutation p.Y432C 0.23 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 3 178937377 178937377 G A PIK3CA Missense_Mutation p.D589N 0.27 tolerated(0.45) benign(0.011) TCGA-2W-A8YY-01 3 178938836 178938836 G A PIK3CA Missense_Mutation p.R693H 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 179051091 179051091 G A ZNF639 Silent p.E113E 0.09 TCGA-2W-A8YY-01 3 179481844 179481844 C T USP13 Missense_Mutation p.A716V 0.53 tolerated(0.15) benign(0.02) TCGA-2W-A8YY-01 3 179499559 179499559 G A USP13 Missense_Mutation p.G816R 0.50 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 179519671 179519671 G A PEX5L Missense_Mutation p.A609V 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-2W-A8YY-01 3 179527283 179527283 C T PEX5L Missense_Mutation p.R443Q 0.41 tolerated(0.07) benign(0.001) TCGA-2W-A8YY-01 3 180327355 180327355 C T TTC14 Intron 0.38 TCGA-2W-A8YY-01 3 180369237 180369237 T G CCDC39 Missense_Mutation p.K373N 0.39 deleterious(0.03) benign(0.115) TCGA-2W-A8YY-01 3 180666565 180666565 T - FXR1 Frame_Shift_Del p.Y161Tfs*8 0.30 TCGA-2W-A8YY-01 3 180669209 180669209 G A FXR1 Missense_Mutation p.A252T 0.27 tolerated(0.12) benign(0.026) TCGA-2W-A8YY-01 3 180685938 180685938 G A FXR1 Missense_Mutation p.R433Q 0.45 tolerated(0.22) possibly_damaging(0.762) TCGA-2W-A8YY-01 3 180693979 180693979 G A FXR1 Missense_Mutation p.D589N 0.36 deleterious_low_confidence(0.04) benign(0.004) TCGA-2W-A8YY-01 3 181430425 181430425 G A SOX2 Missense_Mutation p.E93K 0.24 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 182661695 182661695 C T DCUN1D1 3'UTR 0.46 TCGA-2W-A8YY-01 3 182733252 182733252 C A MCCC1 Nonsense_Mutation p.E718* 0.42 TCGA-2W-A8YY-01 3 182759364 182759364 C T MCCC1 Missense_Mutation p.V420I 0.25 deleterious(0.04) probably_damaging(0.912) TCGA-2W-A8YY-01 3 182788898 182788898 A G MCCC1 Missense_Mutation p.I217T 0.29 tolerated(0.07) probably_damaging(0.976) TCGA-2W-A8YY-01 3 182810197 182810197 C T MCCC1 Missense_Mutation p.M91I 0.37 deleterious(0.02) benign(0.046) TCGA-2W-A8YY-01 3 182841700 182841700 T G LAMP3 3'UTR 0.36 TCGA-2W-A8YY-01 3 182853648 182853648 G A LAMP3 Missense_Mutation p.A325V 0.33 deleterious(0.04) benign(0.42) TCGA-2W-A8YY-01 3 182897186 182897186 G T MCF2L2 Silent p.T1109T 0.57 TCGA-2W-A8YY-01 3 182989526 182989526 C T B3GNT5 3'UTR 0.33 TCGA-2W-A8YY-01 3 183245703 183245703 G A KLHL6 Missense_Mutation p.T130M 0.44 tolerated(0.21) possibly_damaging(0.769) TCGA-2W-A8YY-01 3 183245723 183245723 C T KLHL6 Missense_Mutation p.M123I 0.36 deleterious(0.02) benign(0.007) TCGA-2W-A8YY-01 3 183368479 183368479 T - KLHL24 Frame_Shift_Del p.L113* 0.23 TCGA-2W-A8YY-01 3 183390221 183390221 C T KLHL24 Silent p.Y517Y 0.36 TCGA-2W-A8YY-01 3 183479920 183479920 C T YEATS2 Silent p.H600H 0.46 TCGA-2W-A8YY-01 3 183530262 183530262 T G YEATS2 3'UTR 0.39 TCGA-2W-A8YY-01 3 183547346 183547346 C T PARL 3'UTR 0.17 TCGA-2W-A8YY-01 3 183551531 183551531 A G PARL Missense_Mutation p.F304S 0.41 deleterious(0) possibly_damaging(0.632) TCGA-2W-A8YY-01 3 183639016 183639016 G A ABCC5 3'UTR 0.44 TCGA-2W-A8YY-01 3 183701553 183701553 T C ABCC5 Intron 0.43 TCGA-2W-A8YY-01 3 183750618 183750618 C T HTR3D 5'Flank 0.33 TCGA-2W-A8YY-01 3 183756058 183756058 C T HTR3D Intron 0.24 TCGA-2W-A8YY-01 3 183756261 183756261 C T HTR3D Silent p.T328T 0.30 TCGA-2W-A8YY-01 3 183777417 183777417 C - HTR3C Frame_Shift_Del p.L307Sfs*12 0.14 TCGA-2W-A8YY-01 3 183778168 183778168 A G HTR3C 3'UTR 0.09 TCGA-2W-A8YY-01 3 183823702 183823702 C T HTR3E Silent p.N316N 0.43 TCGA-2W-A8YY-01 3 183901376 183901376 G A AP2M1 Missense_Mutation p.R427H 0.37 deleterious(0) possibly_damaging(0.81) TCGA-2W-A8YY-01 3 183906920 183906920 C T ABCF3 Missense_Mutation p.A341V 0.17 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 3 18390793 18390793 C T SATB1 Missense_Mutation p.E753K 0.21 tolerated(0.06) possibly_damaging(0.562) TCGA-2W-A8YY-01 3 183908981 183908981 C T ABCF3 Missense_Mutation p.P503S 0.47 tolerated(0.13) benign(0.015) TCGA-2W-A8YY-01 3 18391012 18391012 G A SATB1 Nonsense_Mutation p.R680* 0.32 TCGA-2W-A8YY-01 3 183951137 183951137 C T VWA5B2 Missense_Mutation p.P161L 0.36 tolerated(0.33) benign(0.004) TCGA-2W-A8YY-01 3 183953084 183953084 C T VWA5B2 Silent p.S363S 0.37 TCGA-2W-A8YY-01 3 183957606 183957606 T C VWA5B2 Missense_Mutation p.V841A 0.39 tolerated(0.23) benign(0.07) TCGA-2W-A8YY-01 3 183959134 183959134 G A VWA5B2 Missense_Mutation p.S1041N 0.40 deleterious(0.05) benign(0.008) TCGA-2W-A8YY-01 3 184001712 184001712 G A ECE2 Missense_Mutation p.R437Q 0.45 deleterious(0) possibly_damaging(0.866) TCGA-2W-A8YY-01 3 184001752 184001752 G A ECE2 Silent p.S450S 0.23 TCGA-2W-A8YY-01 3 184019861 184019861 T C PSMD2 Splice_Site p.X235_splice 0.67 TCGA-2W-A8YY-01 3 184021247 184021247 G T PSMD2 Missense_Mutation p.K403N 0.09 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 3 184026345 184026345 G A PSMD2 Missense_Mutation p.R845H 0.48 deleterious(0) probably_damaging(0.919) TCGA-2W-A8YY-01 3 184026506 184026506 T C PSMD2 Missense_Mutation p.V852A 0.41 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 3 184042681 184042681 C T EIF4G1 Missense_Mutation p.R886C 0.39 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 3 184043140 184043140 G T EIF4G1 Missense_Mutation p.Q987H 0.35 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 3 184049375 184049375 G A EIF4G1 Missense_Mutation p.R1466Q 0.24 tolerated(0.53) benign(0) TCGA-2W-A8YY-01 3 184053037 184053037 G A EIF4G1 3'UTR 0.38 TCGA-2W-A8YY-01 3 184056262 184056262 G A FAM131A Missense_Mutation p.R59Q 0.15 tolerated(0.39) possibly_damaging(0.776) TCGA-2W-A8YY-01 3 184056276 184056276 T C FAM131A Missense_Mutation p.S64P 0.16 tolerated(0.21) benign(0.267) TCGA-2W-A8YY-01 3 184071895 184071895 C T CLCN2 Missense_Mutation p.R572H 0.26 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 3 184071938 184071938 G A CLCN2 Nonsense_Mutation p.R558* 0.31 TCGA-2W-A8YY-01 3 184089983 184089983 C A THPO 3'UTR 0.36 TCGA-2W-A8YY-01 3 184103940 184103940 G A CHRD Missense_Mutation p.R642Q 0.53 tolerated(0.06) benign(0.028) TCGA-2W-A8YY-01 3 184297522 184297522 C T EPHB3 Nonsense_Mutation p.R658* 0.42 TCGA-2W-A8YY-01 3 184298235 184298235 C T EPHB3 Missense_Mutation p.R740W 0.50 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 184428609 184428609 G T MAGEF1 3'UTR 0.48 TCGA-2W-A8YY-01 3 184550535 184550535 C T VPS8 Missense_Mutation p.T94I 0.12 tolerated(0.27) benign(0.013) TCGA-2W-A8YY-01 3 18456687 18456687 C T SATB1 Silent p.S185S 0.10 TCGA-2W-A8YY-01 3 184588543 184588543 A - VPS8 Frame_Shift_Del p.K563Sfs*10 0.25 TCGA-2W-A8YY-01 3 184633162 184633162 G A VPS8 Missense_Mutation p.R761H 0.19 tolerated(0.15) benign(0.33) TCGA-2W-A8YY-01 3 185155410 185155410 C T MAP3K13 Silent p.I217I 0.08 TCGA-2W-A8YY-01 3 185234925 185234925 G C LIPH Missense_Mutation p.D304E 0.40 tolerated(0.17) benign(0.03) TCGA-2W-A8YY-01 3 185251404 185251404 C T LIPH Missense_Mutation p.G161R 0.40 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 3 185327049 185327049 G T SENP2 Missense_Mutation p.E211D 0.43 tolerated(0.45) benign(0.004) TCGA-2W-A8YY-01 3 185347891 185347892 - T SENP2 3'UTR 0.33 TCGA-2W-A8YY-01 3 185361626 185361626 G A IGF2BP2 3'UTR 0.27 TCGA-2W-A8YY-01 3 185689609 185689609 C T RP11-443P15.2 RNA 0.36 TCGA-2W-A8YY-01 3 185765756 185765756 C T ETV5 3'UTR 0.39 TCGA-2W-A8YY-01 3 185766279 185766279 G A ETV5 3'UTR 0.56 TCGA-2W-A8YY-01 3 185783611 185783611 C T ETV5 Missense_Mutation p.V301I 0.42 tolerated(0.27) benign(0.001) TCGA-2W-A8YY-01 3 185798897 185798897 C T ETV5 Silent p.S100S 0.46 TCGA-2W-A8YY-01 3 185986615 185986615 C T DGKG Missense_Mutation p.R364Q 0.38 tolerated(0.11) benign(0.412) TCGA-2W-A8YY-01 3 186256649 186256649 G A CRYGS Nonsense_Mutation p.R125* 0.27 TCGA-2W-A8YY-01 3 186272042 186272042 C T TBCCD1 Splice_Site p.X515_splice 0.25 TCGA-2W-A8YY-01 3 186288745 186288745 T C DNAJB11 Missense_Mutation p.V20A 0.29 tolerated(0.55) benign(0.001) TCGA-2W-A8YY-01 3 186383944 186383944 C T HRG Nonsense_Mutation p.R42* 0.33 TCGA-2W-A8YY-01 3 186440227 186440227 C T KNG1 Missense_Mutation p.A103V 0.27 deleterious(0.02) benign(0.206) TCGA-2W-A8YY-01 3 186459350 186459350 C T KNG1 Nonsense_Mutation p.R389* 0.40 TCGA-2W-A8YY-01 3 186572144 186572144 C T ADIPOQ Missense_Mutation p.P129L 0.21 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 186795745 186795745 C T ST6GAL1 3'UTR 0.40 TCGA-2W-A8YY-01 3 186917471 186917471 C T RTP1 Silent p.C135C 0.28 TCGA-2W-A8YY-01 3 186936264 186936264 G A MASP1 3'UTR 0.38 TCGA-2W-A8YY-01 3 186937655 186937655 G A MASP1 3'UTR 0.44 TCGA-2W-A8YY-01 3 187416695 187416695 C T RTP2 Missense_Mutation p.R90H 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 3 187419882 187419882 T C RTP2 Missense_Mutation p.K12R 0.38 tolerated(0.35) benign(0.168) TCGA-2W-A8YY-01 3 187440292 187440292 C T BCL6 Missense_Mutation p.R692H 0.47 deleterious(0) possibly_damaging(0.568) TCGA-2W-A8YY-01 3 187447256 187447256 C T BCL6 Missense_Mutation p.A313T 0.51 tolerated(0.54) benign(0.002) TCGA-2W-A8YY-01 3 188124102 188124102 G A LPP Splice_Site p.X65_splice 0.23 TCGA-2W-A8YY-01 3 188596603 188596603 C T LPP 3'UTR 0.31 TCGA-2W-A8YY-01 3 189456433 189456433 C A TP63 Missense_Mutation p.P65H 0.34 deleterious(0.04) possibly_damaging(0.615) TCGA-2W-A8YY-01 3 189582068 189582068 C T TP63 Silent p.C209C 0.53 TCGA-2W-A8YY-01 3 189691703 189691703 G A LEPREL1 Missense_Mutation p.L515F 0.35 deleterious(0.02) benign(0.193) TCGA-2W-A8YY-01 3 190120161 190120161 C T CLDN16 Silent p.C120C 0.36 TCGA-2W-A8YY-01 3 190321982 190321982 C T IL1RAP Missense_Mutation p.R44C 0.33 deleterious(0.03) benign(0.083) TCGA-2W-A8YY-01 3 190338187 190338187 C T IL1RAP Missense_Mutation p.R221C 0.39 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 3 190366441 190366441 C T IL1RAP Intron 0.38 TCGA-2W-A8YY-01 3 190367398 190367398 C T IL1RAP Intron 0.47 TCGA-2W-A8YY-01 3 191078922 191078922 C T CCDC50 Nonsense_Mutation p.R102* 0.46 TCGA-2W-A8YY-01 3 191092978 191092978 A C CCDC50 Missense_Mutation p.E192D 0.50 tolerated(0.24) benign(0.006) TCGA-2W-A8YY-01 3 191093302 191093302 G A CCDC50 Silent p.E300E 0.33 TCGA-2W-A8YY-01 3 191107311 191107311 G A CCDC50 Missense_Mutation p.G450D 0.08 tolerated(0.2) benign(0.173) TCGA-2W-A8YY-01 3 192515758 192515758 A C MB21D2 3'UTR 0.33 TCGA-2W-A8YY-01 3 192980886 192980886 G A HRASLS Silent p.T194T 0.45 TCGA-2W-A8YY-01 3 192992964 192992964 C A ATP13A5 Missense_Mutation p.R1175M 0.20 deleterious(0.01) possibly_damaging(0.711) TCGA-2W-A8YY-01 3 193156820 193156820 C T ATP13A4 Missense_Mutation p.D852N 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 193376716 193376716 C A OPA1 Missense_Mutation p.S773Y 0.33 deleterious(0.04) benign(0.322) TCGA-2W-A8YY-01 3 193855566 193855566 G T HES1 Missense_Mutation p.E129D 0.38 tolerated(0.31) benign(0.05) TCGA-2W-A8YY-01 3 194081557 194081557 C T LRRC15 Silent p.P78P 0.25 TCGA-2W-A8YY-01 3 194338495 194338495 G A TMEM44 Missense_Mutation p.P208L 0.29 tolerated_low_confidence(0.36) benign(0) TCGA-2W-A8YY-01 3 194365408 194365408 C T LSG1 Missense_Mutation p.R564Q 0.09 tolerated(0.34) benign(0.001) TCGA-2W-A8YY-01 3 194371896 194371896 C T LSG1 Missense_Mutation p.G408D 0.28 tolerated(0.6) possibly_damaging(0.685) TCGA-2W-A8YY-01 3 194373704 194373704 G T LSG1 Missense_Mutation p.D309E 0.34 tolerated(0.21) benign(0.04) TCGA-2W-A8YY-01 3 195404643 195404643 T C SDHAP2 RNA 0.33 TCGA-2W-A8YY-01 3 195493559 195493559 A G MUC4 Silent p.P4531P 0.48 TCGA-2W-A8YY-01 3 195495953 195495953 C T MUC4 Missense_Mutation p.G4490D 0.40 probably_damaging(0.989) TCGA-2W-A8YY-01 3 195501086 195501086 G A MUC4 Missense_Mutation p.A4345V 0.14 benign(0.141) TCGA-2W-A8YY-01 3 195509846 195509846 C T MUC4 Missense_Mutation p.D2869N 0.22 possibly_damaging(0.486) TCGA-2W-A8YY-01 3 195511287 195511287 G A MUC4 Silent p.T2388T 0.08 TCGA-2W-A8YY-01 3 195516118 195516118 C A MUC4 Missense_Mutation p.S778I 0.39 unknown(0) TCGA-2W-A8YY-01 3 195517274 195517274 C T MUC4 Missense_Mutation p.V393M 0.48 unknown(0) TCGA-2W-A8YY-01 3 195595295 195595295 C T TNK2 Missense_Mutation p.R688Q 0.35 tolerated_low_confidence(0.24) benign(0.005) TCGA-2W-A8YY-01 3 195599194 195599194 G A TNK2 Silent p.G531G 0.47 TCGA-2W-A8YY-01 3 195619424 195619424 G A TNK2 Intron 0.41 TCGA-2W-A8YY-01 3 195711558 195711558 C T SDHAP1 RNA 0.14 TCGA-2W-A8YY-01 3 19575930 19575930 T C KCNH8 3'UTR 0.30 TCGA-2W-A8YY-01 3 19576040 19576040 G T KCNH8 3'UTR 0.10 TCGA-2W-A8YY-01 3 195780299 195780299 C T TFRC Missense_Mutation p.R677H 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 195800912 195800912 A G TFRC Missense_Mutation p.V108A 0.39 tolerated(0.85) benign(0) TCGA-2W-A8YY-01 3 195953836 195953836 C T SLC51A Missense_Mutation p.A45V 0.38 tolerated(0.24) benign(0.007) TCGA-2W-A8YY-01 3 195984751 195984751 C T PCYT1A Missense_Mutation p.R42Q 0.38 tolerated(0.54) benign(0) TCGA-2W-A8YY-01 3 196083615 196083615 T C UBXN7 Missense_Mutation p.T471A 0.27 deleterious(0.01) possibly_damaging(0.857) TCGA-2W-A8YY-01 3 196288323 196288323 C T WDR53 Silent p.G8G 0.09 TCGA-2W-A8YY-01 3 196293805 196293805 G A WDR53 5'UTR 0.31 TCGA-2W-A8YY-01 3 196294172 196294172 G A WDR53 5'UTR 0.27 TCGA-2W-A8YY-01 3 196460705 196460705 C T PIGX Missense_Mutation p.L255F 0.26 tolerated(0.11) benign(0.057) TCGA-2W-A8YY-01 3 196658669 196658669 C T SENP5 3'UTR 0.45 TCGA-2W-A8YY-01 3 196674295 196674295 C T PIGZ Silent p.E491E 0.41 TCGA-2W-A8YY-01 3 196675133 196675133 C T PIGZ Missense_Mutation p.R212H 0.44 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 3 196675154 196675154 G A PIGZ Missense_Mutation p.P205L 0.47 tolerated(0.12) benign(0.216) TCGA-2W-A8YY-01 3 196735533 196735533 G A MFI2 Missense_Mutation p.T582I 0.39 deleterious(0) probably_damaging(0.931) TCGA-2W-A8YY-01 3 196735694 196735694 G A MFI2 Silent p.Y556Y 0.40 TCGA-2W-A8YY-01 3 196736586 196736586 G A MFI2 Silent p.C476C 0.40 TCGA-2W-A8YY-01 3 196743982 196743982 C T MFI2 Missense_Mutation p.E298K 0.38 tolerated(0.36) possibly_damaging(0.657) TCGA-2W-A8YY-01 3 196796109 196796109 G A DLG1 Silent p.S709S 0.15 TCGA-2W-A8YY-01 3 197402019 197402019 G A KIAA0226 Missense_Mutation p.P930L 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 197402325 197402325 G A KIAA0226 Missense_Mutation p.P903L 0.24 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 197431459 197431459 G A KIAA0226 Silent p.L139L 0.41 TCGA-2W-A8YY-01 3 197559188 197559188 G T LRCH3 Missense_Mutation p.V368L 0.30 tolerated(0.32) benign(0.007) TCGA-2W-A8YY-01 3 197562678 197562678 G A LRCH3 Silent p.R412R 0.48 TCGA-2W-A8YY-01 3 197562679 197562679 C T LRCH3 Nonsense_Mutation p.R413* 0.48 TCGA-2W-A8YY-01 3 197579480 197579480 G A LRCH3 Missense_Mutation p.V527I 0.11 tolerated(0.22) benign(0.007) TCGA-2W-A8YY-01 3 197702919 197702919 C T LMLN Missense_Mutation p.A123V 0.57 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 19921033 19921033 A G EFHB 3'UTR 0.48 TCGA-2W-A8YY-01 3 22210477 22210477 C A ZNF385D RNA 0.41 TCGA-2W-A8YY-01 3 23932546 23932546 T A UBE2E1 3'UTR 0.35 TCGA-2W-A8YY-01 3 239482 239482 C T CHL1 Intron 0.36 TCGA-2W-A8YY-01 3 23960861 23960861 C T RPL15 Missense_Mutation p.R162C 0.47 deleterious(0.02) benign(0.003) TCGA-2W-A8YY-01 3 24003856 24003856 C T NR1D2 Silent p.G302G 0.24 TCGA-2W-A8YY-01 3 24004082 24004082 G T NR1D2 Nonsense_Mutation p.G378* 0.47 TCGA-2W-A8YY-01 3 24018734 24018734 G A NR1D2 Missense_Mutation p.V522I 0.41 tolerated(0.11) benign(0.151) TCGA-2W-A8YY-01 3 24164614 24164614 G A THRB Missense_Mutation p.R383C 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 24206703 24206703 T C THRB Intron 0.23 TCGA-2W-A8YY-01 3 25216026 25216026 A G AC133680.1 3'Flank 0.38 TCGA-2W-A8YY-01 3 25622168 25622168 C T RARB Silent p.I247I 0.33 TCGA-2W-A8YY-01 3 25638914 25638914 A T RARB 3'UTR 0.36 TCGA-2W-A8YY-01 3 25639664 25639664 G A TOP2B 3'UTR 0.33 TCGA-2W-A8YY-01 3 25781291 25781291 C T NGLY1 Splice_Site p.X220_splice 0.40 TCGA-2W-A8YY-01 3 26751091 26751091 A G LRRC3B 5'UTR 0.28 TCGA-2W-A8YY-01 3 26751268 26751268 C T LRRC3B Silent p.P35P 0.51 TCGA-2W-A8YY-01 3 26752146 26752146 G A LRRC3B 3'UTR 0.21 TCGA-2W-A8YY-01 3 27152628 27152628 C A NEK10 3'UTR 0.45 TCGA-2W-A8YY-01 3 27161292 27161292 C T NEK10 Missense_Mutation p.R1107H 0.47 tolerated(0.45) benign(0) TCGA-2W-A8YY-01 3 27233577 27233577 A - NEK10 Frame_Shift_Del p.F816Lfs*28 0.08 TCGA-2W-A8YY-01 3 27333027 27333027 A G NEK10 Missense_Mutation p.V475A 0.36 tolerated(0.11) possibly_damaging(0.64) TCGA-2W-A8YY-01 3 27475478 27475478 C T SLC4A7 Missense_Mutation p.R227Q 0.32 deleterious(0.05) benign(0.234) TCGA-2W-A8YY-01 3 27758761 27758761 T C EOMES Missense_Mutation p.T621A 0.22 tolerated(0.11) benign(0.008) TCGA-2W-A8YY-01 3 27762960 27762960 G A EOMES Silent p.L276L 0.39 TCGA-2W-A8YY-01 3 28382059 28382059 G A AZI2 Missense_Mutation p.A17V 0.44 deleterious(0.02) benign(0.03) TCGA-2W-A8YY-01 3 2861249 2861249 G A CNTN4 Silent p.P146P 0.32 TCGA-2W-A8YY-01 3 28616678 28616678 C T LINC00693 RNA 0.45 TCGA-2W-A8YY-01 3 30664712 30664712 A C TGFBR2 Missense_Mutation p.K39T 0.28 tolerated_low_confidence(0.15) benign(0.011) TCGA-2W-A8YY-01 3 3067811 3067811 T C CNTN4 Silent p.P504P 0.22 TCGA-2W-A8YY-01 3 30686297 30686297 T C TGFBR2 Silent p.C76C 0.17 TCGA-2W-A8YY-01 3 3084019 3084019 C T CNTN4 Silent p.I808I 0.30 TCGA-2W-A8YY-01 3 3133779 3133779 G A IL5RA Intron 0.43 TCGA-2W-A8YY-01 3 3139680 3139680 C T IL5RA Missense_Mutation p.A195T 0.33 deleterious(0.03) probably_damaging(0.934) TCGA-2W-A8YY-01 3 31658471 31658471 C T STT3B Nonsense_Mutation p.R343* 0.42 TCGA-2W-A8YY-01 3 32031517 32031517 T C ZNF860 Missense_Mutation p.C316R 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 3216927 3216927 C A CRBN Nonsense_Mutation p.E32* 0.43 TCGA-2W-A8YY-01 3 32280537 32280537 A G CMTM8 Missense_Mutation p.T25A 0.40 tolerated(0.52) benign(0) TCGA-2W-A8YY-01 3 32533215 32533215 T G CMTM6 Missense_Mutation p.K101T 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 32568305 32568305 C A DYNC1LI1 Nonsense_Mutation p.G520* 0.09 TCGA-2W-A8YY-01 3 32582581 32582581 G A DYNC1LI1 Missense_Mutation p.A229V 0.12 deleterious(0.04) benign(0.363) TCGA-2W-A8YY-01 3 32737173 32737173 G A CNOT10 Missense_Mutation p.R19H 0.13 tolerated_low_confidence(0.63) benign(0) TCGA-2W-A8YY-01 3 32933005 32933005 G A TRIM71 Missense_Mutation p.R770Q 0.49 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 3 32933035 32933035 C T TRIM71 Missense_Mutation p.S780L 0.09 deleterious(0.01) benign(0.432) TCGA-2W-A8YY-01 3 32933115 32933115 C T TRIM71 Missense_Mutation p.R807C 0.38 deleterious(0.01) probably_damaging(0.978) TCGA-2W-A8YY-01 3 33055635 33055635 C T GLB1 Silent p.P549P 0.41 TCGA-2W-A8YY-01 3 33059963 33059963 G A GLB1 Nonsense_Mutation p.R442* 0.31 TCGA-2W-A8YY-01 3 33183890 33183890 G T CRTAP Nonsense_Mutation p.E386* 0.09 TCGA-2W-A8YY-01 3 33194329 33194329 G A SUSD5 Missense_Mutation p.R599C 0.25 deleterious(0) probably_damaging(0.944) TCGA-2W-A8YY-01 3 33406177 33406177 C T FBXL2 Nonsense_Mutation p.R86* 0.27 TCGA-2W-A8YY-01 3 33454240 33454240 C T UBP1 Missense_Mutation p.R141H 0.09 deleterious(0.03) possibly_damaging(0.88) TCGA-2W-A8YY-01 3 33584928 33584928 G T CLASP2 Missense_Mutation p.P1142Q 0.28 deleterious(0) possibly_damaging(0.873) TCGA-2W-A8YY-01 3 33617738 33617738 G A CLASP2 Nonsense_Mutation p.R794* 0.14 TCGA-2W-A8YY-01 3 33650068 33650068 G A CLASP2 Missense_Mutation p.S481L 0.46 tolerated(0.18) probably_damaging(0.99) TCGA-2W-A8YY-01 3 33686279 33686279 G A CLASP2 Missense_Mutation p.P278S 0.46 tolerated(0.07) benign(0.184) TCGA-2W-A8YY-01 3 33725871 33725871 C T CLASP2 Silent p.K208K 0.32 TCGA-2W-A8YY-01 3 35725549 35725549 G T ARPP21 Intron 0.28 TCGA-2W-A8YY-01 3 35726432 35726432 G T ARPP21 Intron 0.29 TCGA-2W-A8YY-01 3 36484931 36484931 C T STAC Nonsense_Mutation p.R63* 0.39 TCGA-2W-A8YY-01 3 36587849 36587849 C T STAC 3'UTR 0.17 TCGA-2W-A8YY-01 3 36896939 36896939 C A TRANK1 Missense_Mutation p.R1381M 0.67 deleterious(0.02) possibly_damaging(0.617) TCGA-2W-A8YY-01 3 36897277 36897277 C T TRANK1 Silent p.T1268T 0.32 TCGA-2W-A8YY-01 3 37067193 37067193 G A MLH1 Silent p.S368S 0.38 TCGA-2W-A8YY-01 3 37343688 37343688 G A GOLGA4 Missense_Mutation p.A389T 0.39 benign(0.259) TCGA-2W-A8YY-01 3 37365561 37365562 - A GOLGA4 Frame_Shift_Ins p.N752Kfs*8 0.36 TCGA-2W-A8YY-01 3 37368266 37368266 A C GOLGA4 Missense_Mutation p.E1652A 0.56 probably_damaging(0.966) TCGA-2W-A8YY-01 3 37407853 37407853 A G GOLGA4 3'UTR 0.35 TCGA-2W-A8YY-01 3 37476511 37476511 C T C3orf35 Missense_Mutation p.R135C 0.31 deleterious_low_confidence(0) benign(0) TCGA-2W-A8YY-01 3 37778426 37778426 A G ITGA9 Missense_Mutation p.H729R 0.34 tolerated(0.93) benign(0.02) TCGA-2W-A8YY-01 3 38022375 38022375 C T CTDSPL 3'UTR 0.24 TCGA-2W-A8YY-01 3 38024350 38024350 C A CTDSPL 3'UTR 0.27 TCGA-2W-A8YY-01 3 38037323 38037323 C T VILL Silent p.H145H 0.41 TCGA-2W-A8YY-01 3 38045845 38045845 G T VILL Missense_Mutation p.E635D 0.24 tolerated(1) benign(0.06) TCGA-2W-A8YY-01 3 38047326 38047326 C T VILL Missense_Mutation p.A665V 0.41 deleterious(0.05) possibly_damaging(0.603) TCGA-2W-A8YY-01 3 38047955 38047955 C T VILL Missense_Mutation p.R741W 0.40 deleterious(0.02) possibly_damaging(0.586) TCGA-2W-A8YY-01 3 38048048 38048048 C T VILL Nonsense_Mutation p.R772* 0.36 TCGA-2W-A8YY-01 3 38104151 38104151 C T DLEC1 Missense_Mutation p.A318V 0.33 deleterious(0.03) benign(0.132) TCGA-2W-A8YY-01 3 38159043 38159043 G A DLEC1 Missense_Mutation p.G1476S 0.31 tolerated(0.15) benign(0.049) TCGA-2W-A8YY-01 3 38295262 38295262 C T OXSR1 3'UTR 0.40 TCGA-2W-A8YY-01 3 38295648 38295648 C T OXSR1 3'UTR 0.35 TCGA-2W-A8YY-01 3 38316618 38316618 C T SLC22A13 Missense_Mutation p.A259V 0.35 tolerated(0.16) benign(0.089) TCGA-2W-A8YY-01 3 38414147 38414147 G A XYLB Missense_Mutation p.G256E 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 38525054 38525054 C T ACVR2B 3'UTR 0.38 TCGA-2W-A8YY-01 3 38533010 38533010 G A ACVR2B 3'UTR 0.30 TCGA-2W-A8YY-01 3 38591372 38591372 G A SCN5A 3'UTR 0.12 TCGA-2W-A8YY-01 3 38645332 38645332 G T SCN5A Silent p.L587L 0.20 TCGA-2W-A8YY-01 3 38647482 38647482 C T SCN5A Missense_Mutation p.R433H 0.43 deleterious(0.01) probably_damaging(0.988) TCGA-2W-A8YY-01 3 38674525 38674525 C T SCN5A Splice_Site p.X91_splice 0.27 TCGA-2W-A8YY-01 3 3886383 3886383 A G LRRN1 Missense_Mutation p.T20A 0.16 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 3 38936052 38936052 C T SCN11A Missense_Mutation p.R936H 0.42 tolerated(0.59) benign(0.002) TCGA-2W-A8YY-01 3 39129673 39129673 C T WDR48 Missense_Mutation p.P510L 0.30 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 3 39135374 39135374 C T WDR48 Silent p.L585L 0.35 TCGA-2W-A8YY-01 3 39171791 39171791 A G TTC21A Missense_Mutation p.D761G 0.09 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 3 39171792 39171792 C T TTC21A Silent p.D761D 0.47 TCGA-2W-A8YY-01 3 39183599 39183599 G A CSRNP1 3'UTR 0.40 TCGA-2W-A8YY-01 3 39226454 39226454 G A XIRP1 Missense_Mutation p.R1495W 0.26 deleterious(0) possibly_damaging(0.65) TCGA-2W-A8YY-01 3 39373862 39373862 G A CCR8 Missense_Mutation p.D14N 0.43 tolerated(0.21) benign(0.341) TCGA-2W-A8YY-01 3 40211520 40211520 C T MYRIP Missense_Mutation p.T270I 0.51 tolerated(0.21) benign(0.048) TCGA-2W-A8YY-01 3 40231358 40231358 G A MYRIP Missense_Mutation p.A357T 0.40 deleterious(0.04) benign(0.059) TCGA-2W-A8YY-01 3 40231475 40231475 G A MYRIP Missense_Mutation p.D396N 0.33 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 3 40299665 40299665 G T MYRIP 3'UTR 0.40 TCGA-2W-A8YY-01 3 40457454 40457454 G A ENTPD3 Missense_Mutation p.D241N 0.36 tolerated(0.55) benign(0.072) TCGA-2W-A8YY-01 3 404938 404938 G A CHL1 Missense_Mutation p.R486Q 0.48 deleterious(0.03) benign(0.03) TCGA-2W-A8YY-01 3 40529008 40529008 G A ZNF619 Missense_Mutation p.R376Q 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-2W-A8YY-01 3 4110275 4110275 C T SUMF1 Missense_Mutation p.G390D 0.36 unknown(0) TCGA-2W-A8YY-01 3 41496992 41496992 G T ULK4 Missense_Mutation p.P1163Q 0.41 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 3 41759281 41759281 G A ULK4 Silent p.Y798Y 0.24 TCGA-2W-A8YY-01 3 41923706 41923706 G A ULK4 Intron 0.11 TCGA-2W-A8YY-01 3 42244093 42244093 C T TRAK1 Silent p.G531G 0.41 TCGA-2W-A8YY-01 3 42679945 42679945 G A NKTR Missense_Mutation p.D917N 0.53 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-2W-A8YY-01 3 42685445 42685445 C T NKTR Silent p.S1417S 0.44 TCGA-2W-A8YY-01 3 42688059 42688059 G A NKTR 3'UTR 0.36 TCGA-2W-A8YY-01 3 42707253 42707253 C A ZBTB47 3'UTR 0.32 TCGA-2W-A8YY-01 3 42729733 42729733 G A KLHL40 Missense_Mutation p.G418S 0.48 deleterious(0.01) possibly_damaging(0.696) TCGA-2W-A8YY-01 3 42781250 42781250 T - CCDC13 Frame_Shift_Del p.K347Rfs*6 0.11 TCGA-2W-A8YY-01 3 42793426 42793426 A G CCDC13 Splice_Site p.X201_splice 0.53 TCGA-2W-A8YY-01 3 42845837 42845837 A C HIGD1A 5'UTR 0.27 TCGA-2W-A8YY-01 3 42949568 42949568 G A ZNF662 Missense_Mutation p.G49S 0.09 tolerated(0.98) benign(0.014) TCGA-2W-A8YY-01 3 42980315 42980315 G A KRBOX1 5'UTR 0.47 TCGA-2W-A8YY-01 3 43073918 43073918 G A FAM198A Missense_Mutation p.A55T 0.36 tolerated_low_confidence(0.63) benign(0.006) TCGA-2W-A8YY-01 3 43074511 43074511 G T FAM198A Missense_Mutation p.R252S 0.45 tolerated(0.11) benign(0.017) TCGA-2W-A8YY-01 3 43121304 43121304 A G POMGNT2 Silent p.A540A 0.53 TCGA-2W-A8YY-01 3 43345186 43345186 A G SNRK Missense_Mutation p.K164R 0.56 tolerated(0.54) benign(0.066) TCGA-2W-A8YY-01 3 43373760 43373760 G A SNRK Missense_Mutation p.C230Y 0.37 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 3 4358286 4358286 C T SETMAR Missense_Mutation p.R471C 0.20 tolerated_low_confidence(0.23) unknown(0) TCGA-2W-A8YY-01 3 4358356 4358356 C T SETMAR Missense_Mutation p.T494M 0.50 tolerated_low_confidence(0.08) unknown(0) TCGA-2W-A8YY-01 3 43607149 43607149 C T ANO10 Missense_Mutation p.R430H 0.11 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 3 44283549 44283549 C T TOPAZ1 Nonsense_Mutation p.R2* 0.32 TCGA-2W-A8YY-01 3 44449348 44449348 C T TCAIM 3'UTR 0.67 TCGA-2W-A8YY-01 3 44541238 44541238 C T ZNF852 Missense_Mutation p.R344Q 0.20 tolerated(0.68) probably_damaging(0.969) TCGA-2W-A8YY-01 3 44612722 44612722 T G ZKSCAN7 Missense_Mutation p.I707S 0.31 deleterious(0) possibly_damaging(0.696) TCGA-2W-A8YY-01 3 44636304 44636304 G T ZNF660 Missense_Mutation p.D207Y 0.41 tolerated(0.06) probably_damaging(0.954) TCGA-2W-A8YY-01 3 44636997 44636997 A T ZNF660 3'UTR 0.10 TCGA-2W-A8YY-01 3 44670669 44670669 A G ZNF197 Missense_Mutation p.H8R 0.47 tolerated_low_confidence(0.31) probably_damaging(0.966) TCGA-2W-A8YY-01 3 44685303 44685303 G T ZNF197 Missense_Mutation p.R894I 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 3 44688070 44688070 G T ZNF197 3'Flank 0.35 TCGA-2W-A8YY-01 3 44688071 44688071 C A ZNF197 3'Flank 0.35 TCGA-2W-A8YY-01 3 44694063 44694063 C A ZNF35 Silent p.S69S 0.31 TCGA-2W-A8YY-01 3 44763420 44763420 C T ZNF502 Nonsense_Mutation p.R371* 0.32 TCGA-2W-A8YY-01 3 44847414 44847414 C T KIF15 Missense_Mutation p.A636V 0.09 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 3 44847432 44847432 G A KIF15 Missense_Mutation p.R642Q 0.31 tolerated(0.06) probably_damaging(0.996) TCGA-2W-A8YY-01 3 44871498 44871498 G A KIF15 Silent p.E993E 0.23 TCGA-2W-A8YY-01 3 44943311 44943311 C T TGM4 Missense_Mutation p.R287C 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 44966778 44966778 G A ZDHHC3 3'UTR 0.43 TCGA-2W-A8YY-01 3 44986679 44986679 C T ZDHHC3 Missense_Mutation p.D138N 0.10 deleterious(0) possibly_damaging(0.783) TCGA-2W-A8YY-01 3 45127073 45127073 C T CDCP1 3'UTR 0.32 TCGA-2W-A8YY-01 3 45137061 45137061 C A CDCP1 Splice_Site p.X342_splice 0.38 TCGA-2W-A8YY-01 3 45152199 45152199 C T CDCP1 Missense_Mutation p.V264I 0.42 tolerated(0.12) benign(0.124) TCGA-2W-A8YY-01 3 45557750 45557750 A G LARS2 Missense_Mutation p.I676V 0.11 deleterious(0.01) benign(0.077) TCGA-2W-A8YY-01 3 45636401 45636401 G A LIMD1 Silent p.E10E 0.10 TCGA-2W-A8YY-01 3 45637654 45637654 G T LIMD1 Missense_Mutation p.R428M 0.45 deleterious(0) possibly_damaging(0.838) TCGA-2W-A8YY-01 3 45718825 45718825 G A LIMD1 3'UTR 0.34 TCGA-2W-A8YY-01 3 45807203 45807203 C T SLC6A20 Missense_Mutation p.V377I 0.12 tolerated(0.11) benign(0.26) TCGA-2W-A8YY-01 3 45814010 45814010 A G SLC6A20 Missense_Mutation p.M227T 0.37 deleterious(0) possibly_damaging(0.882) TCGA-2W-A8YY-01 3 46009817 46009817 G A FYCO1 Silent p.L337L 0.41 TCGA-2W-A8YY-01 3 46009982 46009982 G A FYCO1 Missense_Mutation p.R282C 0.42 tolerated(0.2) benign(0.004) TCGA-2W-A8YY-01 3 46010072 46010072 G A FYCO1 Missense_Mutation p.R252C 0.38 deleterious(0) possibly_damaging(0.841) TCGA-2W-A8YY-01 3 46014672 46014672 G A FYCO1 Silent p.D149D 0.36 TCGA-2W-A8YY-01 3 46245237 46245237 C T CCR1 Missense_Mutation p.E190K 0.19 tolerated(0.35) benign(0.036) TCGA-2W-A8YY-01 3 46400292 46400292 C A CCR2 Intron 0.39 TCGA-2W-A8YY-01 3 46415244 46415244 C A CCR5 Missense_Mutation p.T284N 0.40 deleterious(0.02) possibly_damaging(0.857) TCGA-2W-A8YY-01 3 46495822 46495822 C T LTF Missense_Mutation p.A226T 0.32 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 3 46727842 46727842 C T ALS2CL Missense_Mutation p.V208M 0.29 tolerated(0.29) benign(0.002) TCGA-2W-A8YY-01 3 46783986 46783986 C T PRSS45 Missense_Mutation p.A181T 0.29 tolerated(0.43) benign(0.015) TCGA-2W-A8YY-01 3 47030600 47030600 C T NBEAL2 Missense_Mutation p.R99W 0.50 tolerated(0.19) benign(0) TCGA-2W-A8YY-01 3 47039056 47039056 C T NBEAL2 Missense_Mutation p.R944W 0.38 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 3 47042665 47042665 C T NBEAL2 Missense_Mutation p.R1494C 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-2W-A8YY-01 3 47042853 47042853 G A NBEAL2 Silent p.A1523A 0.38 TCGA-2W-A8YY-01 3 47044480 47044480 C T NBEAL2 Silent p.S1831S 0.55 TCGA-2W-A8YY-01 3 47059192 47059192 C T SETD2 Missense_Mutation p.R2490Q 0.35 deleterious(0.02) probably_damaging(0.918) TCGA-2W-A8YY-01 3 4725106 4725106 C T ITPR1 Silent p.G1051G 0.37 TCGA-2W-A8YY-01 3 47450514 47450514 C T PTPN23 Missense_Mutation p.R527C 0.24 unknown(0) TCGA-2W-A8YY-01 3 47451326 47451326 T C PTPN23 Splice_Site p.X710_splice 0.30 TCGA-2W-A8YY-01 3 47460295 47460295 C T SCAP Missense_Mutation p.R660H 0.41 tolerated(0.54) benign(0) TCGA-2W-A8YY-01 3 47545828 47545828 C T ELP6 Silent p.Q105Q 0.43 TCGA-2W-A8YY-01 3 47545918 47545918 C T ELP6 Silent p.A75A 0.62 TCGA-2W-A8YY-01 3 47610573 47610573 G A CSPG5 Silent p.N509N 0.45 TCGA-2W-A8YY-01 3 47663819 47663819 C G SMARCC1 Missense_Mutation p.V887L 0.35 tolerated(0.09) possibly_damaging(0.801) TCGA-2W-A8YY-01 3 47747949 47747949 C T SMARCC1 Silent p.S330S 0.32 TCGA-2W-A8YY-01 3 47882464 47882464 G A DHX30 Missense_Mutation p.R155H 0.38 tolerated_low_confidence(0.06) benign(0.075) TCGA-2W-A8YY-01 3 47883180 47883180 C A DHX30 Missense_Mutation p.L248I 0.37 tolerated(0.1) possibly_damaging(0.71) TCGA-2W-A8YY-01 3 47887679 47887679 G A DHX30 Missense_Mutation p.A373T 0.46 tolerated(0.46) benign(0) TCGA-2W-A8YY-01 3 47888414 47888414 G A DHX30 Missense_Mutation p.V618I 0.40 deleterious(0) possibly_damaging(0.816) TCGA-2W-A8YY-01 3 47894336 47894336 G A MAP4 3'UTR 0.32 TCGA-2W-A8YY-01 3 4810343 4810343 C T ITPR1 Silent p.A1943A 0.44 TCGA-2W-A8YY-01 3 48310536 48310536 G A ZNF589 3'UTR 0.16 TCGA-2W-A8YY-01 3 48450833 48450833 G A PLXNB1 Silent p.F1997F 0.26 TCGA-2W-A8YY-01 3 48451377 48451377 G A PLXNB1 Silent p.G1905G 0.47 TCGA-2W-A8YY-01 3 48454505 48454505 G A PLXNB1 Missense_Mutation p.R1537W 0.38 deleterious(0.04) probably_damaging(0.989) TCGA-2W-A8YY-01 3 48457057 48457057 G A PLXNB1 Silent p.R1243R 0.44 TCGA-2W-A8YY-01 3 48462772 48462772 G T PLXNB1 Missense_Mutation p.L559M 0.26 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 3 48474028 48474028 C T CCDC51 Silent p.K342K 0.46 TCGA-2W-A8YY-01 3 4847854 4847854 G A ITPR1 Missense_Mutation p.R2377Q 0.31 tolerated(0.15) benign(0.017) TCGA-2W-A8YY-01 3 48510821 48510821 C T SHISA5 Silent p.Q194Q 0.30 TCGA-2W-A8YY-01 3 48608096 48608096 C T COL7A1 Silent p.G2440G 0.12 TCGA-2W-A8YY-01 3 48608676 48608676 C A COL7A1 Missense_Mutation p.K2368N 0.32 probably_damaging(1) TCGA-2W-A8YY-01 3 48616818 48616818 C T COL7A1 Missense_Mutation p.G1764D 0.12 unknown(0) TCGA-2W-A8YY-01 3 48618329 48618329 C T COL7A1 Missense_Mutation p.E1656K 0.58 unknown(0) TCGA-2W-A8YY-01 3 48677738 48677738 G A CELSR3 Missense_Mutation p.R3094C 0.10 tolerated_low_confidence(0.08) benign(0) TCGA-2W-A8YY-01 3 48683183 48683183 G A CELSR3 Missense_Mutation p.P2528S 0.43 tolerated(0.52) benign(0.334) TCGA-2W-A8YY-01 3 48689086 48689086 G A CELSR3 Missense_Mutation p.R1997W 0.55 deleterious(0.02) possibly_damaging(0.836) TCGA-2W-A8YY-01 3 48698372 48698372 G A CELSR3 Missense_Mutation p.R566C 0.55 deleterious(0) probably_damaging(0.954) TCGA-2W-A8YY-01 3 48732763 48732763 G A IP6K2 5'UTR 0.30 TCGA-2W-A8YY-01 3 4878613 4878613 G T ITPR1 Missense_Mutation p.K2713N 0.43 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 3 4888137 4888137 T C ITPR1 3'UTR 0.23 TCGA-2W-A8YY-01 3 49020967 49020967 T C ARIH2 3'UTR 0.48 TCGA-2W-A8YY-01 3 49039998 49039998 C T P4HTM Silent p.Y231Y 0.26 TCGA-2W-A8YY-01 3 49051390 49051390 G A WDR6 Missense_Mutation p.R838Q 0.11 deleterious(0) possibly_damaging(0.908) TCGA-2W-A8YY-01 3 49062404 49062404 C T IMPDH2 Missense_Mutation p.R407Q 0.30 deleterious(0.02) probably_damaging(0.993) TCGA-2W-A8YY-01 3 49064404 49064404 C T IMPDH2 Missense_Mutation p.R203H 0.42 deleterious(0.01) possibly_damaging(0.575) TCGA-2W-A8YY-01 3 49148482 49148482 G A USP19 Missense_Mutation p.P1147L 0.35 deleterious(0) possibly_damaging(0.896) TCGA-2W-A8YY-01 3 49149437 49149437 C T USP19 Missense_Mutation p.R935Q 0.31 deleterious(0.04) possibly_damaging(0.786) TCGA-2W-A8YY-01 3 49154957 49154957 A G USP19 Silent p.S173S 0.41 TCGA-2W-A8YY-01 3 49160617 49160617 C T LAMB2 Missense_Mutation p.G1391D 0.53 tolerated(1) benign(0.008) TCGA-2W-A8YY-01 3 49161314 49161314 G A LAMB2 Missense_Mutation p.A1215V 0.67 tolerated(0.71) benign(0.012) TCGA-2W-A8YY-01 3 49162015 49162015 G A LAMB2 Missense_Mutation p.P1047L 0.38 tolerated(0.18) benign(0.407) TCGA-2W-A8YY-01 3 49200035 49200035 C T CCDC71 3'UTR 0.33 TCGA-2W-A8YY-01 3 49200037 49200037 C T CCDC71 3'UTR 0.33 TCGA-2W-A8YY-01 3 49200234 49200234 G A CCDC71 3'UTR 0.30 TCGA-2W-A8YY-01 3 49215165 49215165 G A C3orf84 Silent p.L173L 0.42 TCGA-2W-A8YY-01 3 49322349 49322349 C T USP4 Missense_Mutation p.R735Q 0.63 tolerated(0.8) benign(0.228) TCGA-2W-A8YY-01 3 49568238 49568238 G A DAG1 Silent p.A98A 0.39 TCGA-2W-A8YY-01 3 49568536 49568536 G A DAG1 Missense_Mutation p.D198N 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 3 49569126 49569126 C A DAG1 Silent p.G394G 0.41 TCGA-2W-A8YY-01 3 49694682 49694682 G A BSN Missense_Mutation p.A2565T 0.43 unknown(0) TCGA-2W-A8YY-01 3 49695090 49695090 G A BSN Missense_Mutation p.V2701I 0.09 unknown(0) TCGA-2W-A8YY-01 3 49699566 49699566 G A BSN Missense_Mutation p.A3430T 0.40 unknown(0) TCGA-2W-A8YY-01 3 49700826 49700826 G A BSN Silent p.P3745P 0.57 TCGA-2W-A8YY-01 3 49712686 49712686 C T APEH Silent p.D72D 0.44 TCGA-2W-A8YY-01 3 49723503 49723503 C T MST1 Missense_Mutation p.R380Q 0.38 tolerated(0.49) benign(0.015) TCGA-2W-A8YY-01 3 49723594 49723594 C T MST1 Missense_Mutation p.D350N 0.32 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 3 49724484 49724484 G A MST1 Silent p.C208C 0.43 TCGA-2W-A8YY-01 3 49728897 49728897 G A RNF123 Missense_Mutation p.R41H 0.21 tolerated_low_confidence(0.36) benign(0.001) TCGA-2W-A8YY-01 3 49737137 49737137 C T RNF123 Missense_Mutation p.R306W 0.31 deleterious(0.01) possibly_damaging(0.487) TCGA-2W-A8YY-01 3 49743046 49743046 G A RNF123 Silent p.S746S 0.35 TCGA-2W-A8YY-01 3 49756161 49756161 C T AMIGO3 Silent p.A246A 0.54 TCGA-2W-A8YY-01 3 49759672 49759672 C T GMPPB Missense_Mutation p.V254M 0.08 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 3 49760040 49760040 G A GMPPB Nonsense_Mutation p.Q184* 0.34 TCGA-2W-A8YY-01 3 49760417 49760417 C T GMPPB Silent p.E130E 0.25 TCGA-2W-A8YY-01 3 49831320 49831320 C T CDHR4 Missense_Mutation p.G467S 0.28 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 49841742 49841742 C T FAM212A Silent p.C62C 0.19 TCGA-2W-A8YY-01 3 49848062 49848062 G A UBA7 Missense_Mutation p.A452V 0.38 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 3 49850534 49850534 C T UBA7 Missense_Mutation p.G143E 0.52 deleterious(0) probably_damaging(0.939) TCGA-2W-A8YY-01 3 49866507 49866507 T C TRAIP 3'UTR 0.29 TCGA-2W-A8YY-01 3 49896532 49896532 G A CAMKV 3'UTR 0.17 TCGA-2W-A8YY-01 3 49928731 49928731 G A MST1R Silent p.T1181T 0.54 TCGA-2W-A8YY-01 3 49933192 49933192 G A MST1R Missense_Mutation p.A973V 0.17 tolerated(0.3) benign(0.017) TCGA-2W-A8YY-01 3 49948255 49948255 G A MON1A Missense_Mutation p.R323W 0.47 tolerated(0.19) possibly_damaging(0.804) TCGA-2W-A8YY-01 3 50000091 50000091 G A RBM6 Missense_Mutation p.R6Q 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.529) TCGA-2W-A8YY-01 3 50095308 50095308 G A RBM6 Missense_Mutation p.R614H 0.51 tolerated(0.05) benign(0.004) TCGA-2W-A8YY-01 3 50147060 50147060 C T RBM5 Missense_Mutation p.A406V 0.19 tolerated(0.21) benign(0.141) TCGA-2W-A8YY-01 3 50154597 50154597 G A RBM5 Missense_Mutation p.G729S 0.33 tolerated(0.25) benign(0.296) TCGA-2W-A8YY-01 3 5021657 5021657 G A BHLHE40 Missense_Mutation p.A31T 0.43 tolerated(0.47) benign(0.003) TCGA-2W-A8YY-01 3 50226059 50226059 G T SEMA3F 3'UTR 0.20 TCGA-2W-A8YY-01 3 5024984 5024984 C T BHLHE40 Silent p.S282S 0.67 TCGA-2W-A8YY-01 3 5026348 5026348 G A BHLHE40 3'UTR 0.40 TCGA-2W-A8YY-01 3 50296496 50296496 C T GNAI2 3'UTR 0.35 TCGA-2W-A8YY-01 3 50313174 50313174 G A LSMEM2 5'Flank 0.36 TCGA-2W-A8YY-01 3 50324542 50324542 G A LSMEM2 Missense_Mutation p.R135H 0.24 tolerated(0.23) benign(0.008) TCGA-2W-A8YY-01 3 50324899 50324899 T C LSMEM2 3'UTR 0.43 TCGA-2W-A8YY-01 3 50334331 50334331 G A NAT6 Silent p.Y210Y 0.58 TCGA-2W-A8YY-01 3 50363404 50363404 G A TUSC2 3'UTR 0.29 TCGA-2W-A8YY-01 3 50375587 50375587 G A RASSF1 Intron 0.33 TCGA-2W-A8YY-01 3 50388771 50388771 C T CYB561D2 5'UTR 0.37 TCGA-2W-A8YY-01 3 50645071 50645071 G A CISH Silent p.A265A 0.39 TCGA-2W-A8YY-01 3 50645496 50645496 G A CISH Missense_Mutation p.R124C 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 50677912 50677912 G A MAPKAPK3 Missense_Mutation p.R112H 0.33 deleterious(0) benign(0.148) TCGA-2W-A8YY-01 3 50816123 50816123 G T DOCK3 Nonsense_Mutation p.G19* 0.30 TCGA-2W-A8YY-01 3 51430385 51430385 C T RBM15B Missense_Mutation p.R519W 0.30 deleterious(0.03) probably_damaging(0.984) TCGA-2W-A8YY-01 3 51517751 51517751 C T VPRBP Missense_Mutation p.V32I 0.44 tolerated(0.5) benign(0.262) TCGA-2W-A8YY-01 3 51663363 51663363 G T RAD54L2 Nonsense_Mutation p.E119* 0.41 TCGA-2W-A8YY-01 3 51664860 51664860 G A RAD54L2 Silent p.G246G 0.26 TCGA-2W-A8YY-01 3 51671197 51671197 C T RAD54L2 Missense_Mutation p.R454C 0.40 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 3 51708556 51708556 T C TEX264 Missense_Mutation p.V79A 0.44 deleterious(0.01) benign(0.422) TCGA-2W-A8YY-01 3 51733431 51733431 C T TEX264 Silent p.L164L 0.35 TCGA-2W-A8YY-01 3 51747074 51747074 C T GRM2 Missense_Mutation p.R346C 0.47 deleterious(0.03) benign(0.117) TCGA-2W-A8YY-01 3 51747227 51747227 C T GRM2 Missense_Mutation p.R397C 0.16 deleterious(0.01) possibly_damaging(0.766) TCGA-2W-A8YY-01 3 51747269 51747269 C T GRM2 Missense_Mutation p.R411W 0.43 deleterious(0.01) probably_damaging(0.948) TCGA-2W-A8YY-01 3 51751697 51751697 C T GRM2 Silent p.S803S 0.18 TCGA-2W-A8YY-01 3 51752062 51752062 C A GRM2 Silent p.G851G 0.31 TCGA-2W-A8YY-01 3 51812894 51812894 C T IQCF6 Missense_Mutation p.M23I 0.37 tolerated(0.64) benign(0) TCGA-2W-A8YY-01 3 51929042 51929042 C T IQCF1 Missense_Mutation p.R161H 0.24 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 3 51989615 51989615 T C GPR62 5'UTR 0.52 TCGA-2W-A8YY-01 3 51991902 51991902 C - PCBP4 3'UTR 0.15 TCGA-2W-A8YY-01 3 52021045 52021045 C T ACY1 Missense_Mutation p.R209C 0.22 deleterious(0.05) benign(0.266) TCGA-2W-A8YY-01 3 52181086 52181086 C T POC1A Missense_Mutation p.V161M 0.30 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 3 52238832 52238832 A G ALAS1 Missense_Mutation p.D234G 0.26 deleterious(0.01) possibly_damaging(0.698) TCGA-2W-A8YY-01 3 52248060 52248060 A G ALAS1 Missense_Mutation p.Q596R 0.25 tolerated(0.26) benign(0) TCGA-2W-A8YY-01 3 52257558 52257558 G A TLR9 Silent p.C412C 0.37 TCGA-2W-A8YY-01 3 52283560 52283560 C A PPM1M Intron 0.64 TCGA-2W-A8YY-01 3 52326341 52326341 C T GLYCTK Silent p.T257T 0.19 TCGA-2W-A8YY-01 3 52379564 52379564 T C DNAH1 Missense_Mutation p.F500L 0.29 benign(0.032) TCGA-2W-A8YY-01 3 52388948 52388948 G A DNAH1 Silent p.P1190P 0.44 TCGA-2W-A8YY-01 3 52413939 52413939 C T DNAH1 Nonsense_Mutation p.R2466* 0.40 TCGA-2W-A8YY-01 3 52417973 52417973 C A DNAH1 Missense_Mutation p.L2750M 0.51 probably_damaging(1) TCGA-2W-A8YY-01 3 52418975 52418975 G A DNAH1 Missense_Mutation p.M2832I 0.14 benign(0.105) TCGA-2W-A8YY-01 3 52418978 52418978 G A DNAH1 Silent p.K2833K 0.13 TCGA-2W-A8YY-01 3 52420191 52420191 G A DNAH1 Missense_Mutation p.A2881T 0.28 probably_damaging(1) TCGA-2W-A8YY-01 3 52433793 52433793 C T DNAH1 Missense_Mutation p.A4225V 0.26 probably_damaging(0.993) TCGA-2W-A8YY-01 3 52442540 52442540 T C BAP1 Missense_Mutation p.T69A 0.35 tolerated(0.14) possibly_damaging(0.778) TCGA-2W-A8YY-01 3 52474810 52474810 C T SEMA3G Missense_Mutation p.G320R 0.42 tolerated(0.5) benign(0.258) TCGA-2W-A8YY-01 3 52521229 52521229 C T NISCH Missense_Mutation p.P574L 0.20 tolerated(0.14) benign(0.207) TCGA-2W-A8YY-01 3 52521240 52521240 G A NISCH Missense_Mutation p.V578M 0.33 tolerated(0.11) possibly_damaging(0.735) TCGA-2W-A8YY-01 3 52524204 52524204 G A NISCH Silent p.V1190V 0.24 TCGA-2W-A8YY-01 3 52524720 52524720 G A NISCH Splice_Site p.X1205_splice 0.26 TCGA-2W-A8YY-01 3 52525980 52525980 G A NISCH Missense_Mutation p.A1333T 0.44 deleterious(0) benign(0.042) TCGA-2W-A8YY-01 3 52537841 52537841 G A STAB1 Silent p.A315A 0.26 TCGA-2W-A8YY-01 3 52544190 52544190 G A STAB1 Missense_Mutation p.G856D 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 52548457 52548457 G A STAB1 Missense_Mutation p.R1208H 0.40 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 3 52548489 52548489 G A STAB1 Missense_Mutation p.V1219I 0.47 tolerated(0.19) benign(0.06) TCGA-2W-A8YY-01 3 52555688 52555688 G A STAB1 Nonsense_Mutation p.W2045* 0.11 TCGA-2W-A8YY-01 3 52557708 52557708 A T STAB1 Missense_Mutation p.D2444V 0.36 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 3 52557947 52557947 G A STAB1 Missense_Mutation p.A2486T 0.23 tolerated(0.36) benign(0.003) TCGA-2W-A8YY-01 3 52558519 52558519 G A NT5DC2 Silent p.T547T 0.25 TCGA-2W-A8YY-01 3 52561697 52561697 G A NT5DC2 Missense_Mutation p.R325C 0.21 deleterious(0) probably_damaging(0.94) TCGA-2W-A8YY-01 3 52574499 52574499 T C SMIM4 Nonstop_Mutation p.*71Rext*2 0.27 TCGA-2W-A8YY-01 3 52582241 52582241 G A PBRM1 Silent p.R1529R 0.45 TCGA-2W-A8YY-01 3 5258659 5258659 C T EDEM1 3'UTR 0.28 TCGA-2W-A8YY-01 3 52731859 52731859 G A GLT8D1 Silent p.V69V 0.35 TCGA-2W-A8YY-01 3 52819193 52819193 G A ITIH1 Missense_Mutation p.R514H 0.30 tolerated(0.06) benign(0.035) TCGA-2W-A8YY-01 3 52823705 52823705 C T ITIH1 Missense_Mutation p.A719V 0.08 tolerated(0.28) benign(0.068) TCGA-2W-A8YY-01 3 52833064 52833064 C T ITIH3 Missense_Mutation p.T249I 0.36 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 3 52874073 52874073 G A TMEM110 3'UTR 0.50 TCGA-2W-A8YY-01 3 52988399 52988399 T G SFMBT1 Missense_Mutation p.E19D 0.46 tolerated(0.82) probably_damaging(0.984) TCGA-2W-A8YY-01 3 53126396 53126396 C T RFT1 Missense_Mutation p.A483T 0.42 tolerated(0.37) benign(0.056) TCGA-2W-A8YY-01 3 53217169 53217169 G A PRKCD Missense_Mutation p.D202N 0.10 tolerated(0.07) possibly_damaging(0.871) TCGA-2W-A8YY-01 3 53275163 53275163 G A TKT Silent p.D108D 0.39 TCGA-2W-A8YY-01 3 53322293 53322293 G A DCP1A Silent p.G488G 0.60 TCGA-2W-A8YY-01 3 53353463 53353463 G A DCP1A Silent p.D114D 0.23 TCGA-2W-A8YY-01 3 53531282 53531282 C T CACNA1D Silent p.I57I 0.57 TCGA-2W-A8YY-01 3 53845798 53845798 C A CACNA1D 3'UTR 0.48 TCGA-2W-A8YY-01 3 53857678 53857678 G T CHDH Missense_Mutation p.L120M 0.46 tolerated(0.64) benign(0.028) TCGA-2W-A8YY-01 3 53883706 53883706 A C IL17RB Missense_Mutation p.Q37P 0.16 tolerated(0.11) benign(0.352) TCGA-2W-A8YY-01 3 53891663 53891663 G A IL17RB Silent p.T231T 0.41 TCGA-2W-A8YY-01 3 54919579 54919579 G T CACNA2D3 Missense_Mutation p.K674N 0.34 tolerated(0.3) probably_damaging(0.996) TCGA-2W-A8YY-01 3 54952582 54952582 C T LRTM1 Silent p.A314A 0.36 TCGA-2W-A8YY-01 3 55108155 55108155 G A CACNA2D3 Silent p.E1066E 0.45 TCGA-2W-A8YY-01 3 55501309 55501309 G A WNT5A 3'UTR 0.27 TCGA-2W-A8YY-01 3 55504433 55504433 C T WNT5A Missense_Mutation p.R277Q 0.41 tolerated(0.05) benign(0.05) TCGA-2W-A8YY-01 3 55544133 55544133 C A ERC2 3'UTR 0.41 TCGA-2W-A8YY-01 3 56681206 56681206 C A FAM208A Missense_Mutation p.S520I 0.45 tolerated(0.48) benign(0.001) TCGA-2W-A8YY-01 3 56705702 56705702 C T FAM208A Missense_Mutation p.E166K 0.35 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 3 56762156 56762156 G A ARHGEF3 3'UTR 0.30 TCGA-2W-A8YY-01 3 56762287 56762287 C A ARHGEF3 3'UTR 0.39 TCGA-2W-A8YY-01 3 56779385 56779385 G A ARHGEF3 Nonsense_Mutation p.R272* 0.36 TCGA-2W-A8YY-01 3 57107669 57107669 G A SPATA12 5'UTR 0.36 TCGA-2W-A8YY-01 3 57109042 57109042 C T SPATA12 3'UTR 0.36 TCGA-2W-A8YY-01 3 57125112 57125112 G A IL17RD 3'UTR 0.29 TCGA-2W-A8YY-01 3 57139956 57139956 C T IL17RD Missense_Mutation p.G226S 0.52 deleterious(0.01) probably_damaging(0.948) TCGA-2W-A8YY-01 3 57335763 57335763 C T DNAH12 Silent p.Q517Q 0.32 TCGA-2W-A8YY-01 3 57391565 57391565 C T DNAH12 Missense_Mutation p.A2112T 0.31 tolerated(0.99) benign(0.229) TCGA-2W-A8YY-01 3 57399591 57399591 G A DNAH12 Missense_Mutation p.P1949S 0.28 deleterious(0) possibly_damaging(0.876) TCGA-2W-A8YY-01 3 57447247 57447247 G T DNAH12 Missense_Mutation p.P879H 0.53 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 3 57647237 57647237 A - DENND6A Frame_Shift_Del p.H186Tfs*7 0.27 TCGA-2W-A8YY-01 3 57893668 57893668 G A SLMAP Missense_Mutation p.R486Q 0.36 deleterious_low_confidence(0.02) benign(0.196) TCGA-2W-A8YY-01 3 58080628 58080628 G A FLNB Missense_Mutation p.G285R 0.48 deleterious(0) probably_damaging(0.975) TCGA-2W-A8YY-01 3 58109054 58109054 T C FLNB Missense_Mutation p.S1121P 0.47 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 58117681 58117681 G A FLNB Missense_Mutation p.R1473H 0.51 deleterious(0.05) benign(0.001) TCGA-2W-A8YY-01 3 58131749 58131749 A G FLNB Missense_Mutation p.T1874A 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-2W-A8YY-01 3 58135711 58135711 G A FLNB Missense_Mutation p.A2107T 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 3 58148797 58148797 G A FLNB Intron 0.38 TCGA-2W-A8YY-01 3 58155447 58155447 C A FLNB Silent p.T2547T 0.34 TCGA-2W-A8YY-01 3 58157783 58157783 C T FLNB 3'Flank 0.62 TCGA-2W-A8YY-01 3 58186822 58186822 C T DNASE1L3 Missense_Mutation p.V150M 0.40 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 3 58196518 58196518 T G DNASE1L3 Missense_Mutation p.K39T 0.42 tolerated(0.24) benign(0.01) TCGA-2W-A8YY-01 3 58196582 58196582 C T DNASE1L3 Missense_Mutation p.A18T 0.42 tolerated(0.5) benign(0) TCGA-2W-A8YY-01 3 58253025 58253025 C T ABHD6 Missense_Mutation p.L77F 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 58303475 58303475 G A RPP14 Silent p.R45R 0.40 TCGA-2W-A8YY-01 3 58381459 58381459 A - PXK Frame_Shift_Del p.T267Hfs*7 0.31 TCGA-2W-A8YY-01 3 58394717 58394717 G A PXK Missense_Mutation p.E433K 0.40 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 3 58510205 58510205 C T ACOX2 Missense_Mutation p.D492N 0.14 tolerated(0.16) benign(0.344) TCGA-2W-A8YY-01 3 62177315 62177315 C T PTPRG Silent p.S402S 0.27 TCGA-2W-A8YY-01 3 62229570 62229570 C T PTPRG Missense_Mutation p.P822L 0.31 deleterious(0.03) possibly_damaging(0.716) TCGA-2W-A8YY-01 3 62647993 62647993 G A CADPS Missense_Mutation p.A322V 0.43 deleterious(0.05) possibly_damaging(0.483) TCGA-2W-A8YY-01 3 62860474 62860474 C - CADPS Frame_Shift_Del p.L78Cfs*20 0.44 TCGA-2W-A8YY-01 3 63823732 63823732 C A THOC7 Missense_Mutation p.S91I 0.11 tolerated(0.06) possibly_damaging(0.748) TCGA-2W-A8YY-01 3 63981252 63981252 C T ATXN7 Missense_Mutation p.P585L 0.43 tolerated(0.12) benign(0.047) TCGA-2W-A8YY-01 3 64008338 64008338 C T PSMD6 Intron 0.41 TCGA-2W-A8YY-01 3 64084732 64084732 A - PRICKLE2 Frame_Shift_Del p.S844Lfs*45 0.21 TCGA-2W-A8YY-01 3 64148712 64148712 G A PRICKLE2 Silent p.L80L 0.40 TCGA-2W-A8YY-01 3 64589631 64589631 G A ADAMTS9 Silent p.P1238P 0.28 TCGA-2W-A8YY-01 3 65341316 65341316 C T MAGI1 3'Flank 0.46 TCGA-2W-A8YY-01 3 65341691 65341691 G T MAGI1 3'Flank 0.31 TCGA-2W-A8YY-01 3 65346854 65346854 G A MAGI1 Intron 0.35 TCGA-2W-A8YY-01 3 65367727 65367727 G A MAGI1 Silent p.I842I 0.60 TCGA-2W-A8YY-01 3 65415727 65415727 A G MAGI1 Silent p.G545G 0.15 TCGA-2W-A8YY-01 3 65415770 65415770 G A MAGI1 Missense_Mutation p.T531I 0.26 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 3 66023951 66023951 C T MAGI1 Nonsense_Mutation p.W11* 0.27 TCGA-2W-A8YY-01 3 67053635 67053635 G A KBTBD8 Missense_Mutation p.G82S 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 67058348 67058348 G T KBTBD8 Nonsense_Mutation p.E449* 0.32 TCGA-2W-A8YY-01 3 68466480 68466480 C T FAM19A1 Missense_Mutation p.R57C 0.42 deleterious(0) possibly_damaging(0.88) TCGA-2W-A8YY-01 3 69027513 69027513 G A EOGT Missense_Mutation p.R386W 0.43 deleterious(0) benign(0.246) TCGA-2W-A8YY-01 3 6903395 6903395 A G GRM7 Missense_Mutation p.D107G 0.51 deleterious(0) possibly_damaging(0.715) TCGA-2W-A8YY-01 3 69072186 69072186 G A TMF1 3'UTR 0.18 TCGA-2W-A8YY-01 3 69082718 69082718 C A TMF1 Missense_Mutation p.K794N 0.26 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 3 69097114 69097114 T C TMF1 Missense_Mutation p.T248A 0.53 tolerated_low_confidence(0.55) benign(0.007) TCGA-2W-A8YY-01 3 69230613 69230613 C T FRMD4B Missense_Mutation p.R763Q 0.41 tolerated(0.05) probably_damaging(0.996) TCGA-2W-A8YY-01 3 69239047 69239047 G A FRMD4B Missense_Mutation p.P591S 0.35 tolerated(0.17) benign(0) TCGA-2W-A8YY-01 3 69360414 69360414 G A FRMD4B Missense_Mutation p.T108I 0.36 tolerated(0.13) benign(0.003) TCGA-2W-A8YY-01 3 69788833 69788833 A G MITF Missense_Mutation p.S29G 0.40 deleterious(0.01) benign(0.191) TCGA-2W-A8YY-01 3 69987113 69987113 C T MITF Silent p.G165G 0.42 TCGA-2W-A8YY-01 3 70005639 70005639 G A MITF Missense_Mutation p.R324H 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 3 70016527 70016527 T C MITF 3'UTR 0.22 TCGA-2W-A8YY-01 3 71005372 71005372 G A FOXP1 3'Flank 0.47 TCGA-2W-A8YY-01 3 71007958 71007958 A G FOXP1 3'Flank 0.21 TCGA-2W-A8YY-01 3 71008515 71008515 G A FOXP1 Silent p.P641P 0.40 TCGA-2W-A8YY-01 3 71027021 71027021 G A FOXP1 Missense_Mutation p.R438C 0.47 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 3 71804186 71804186 C T GPR27 Missense_Mutation p.A329V 0.39 deleterious(0.05) probably_damaging(0.954) TCGA-2W-A8YY-01 3 72424390 72424390 A G RYBP 3'UTR 0.50 TCGA-2W-A8YY-01 3 72890203 72890203 C T SHQ1 Missense_Mutation p.R160Q 0.29 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 3 73433485 73433485 G A PDZRN3 Silent p.T744T 0.32 TCGA-2W-A8YY-01 3 73433571 73433571 G A PDZRN3 Missense_Mutation p.R716C 0.39 tolerated(0.05) possibly_damaging(0.856) TCGA-2W-A8YY-01 3 73657756 73657756 G A PDZRN3 Missense_Mutation p.P268L 0.24 deleterious(0) benign(0.053) TCGA-2W-A8YY-01 3 74311904 74311904 G T CNTN3 3'UTR 0.23 TCGA-2W-A8YY-01 3 7456752 7456752 G T GRM7 Missense_Mutation p.R359I 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-2W-A8YY-01 3 75471078 75471078 C T FAM86DP RNA 0.22 TCGA-2W-A8YY-01 3 75471955 75471955 G A FAM86DP RNA 0.46 TCGA-2W-A8YY-01 3 75787034 75787034 T C ZNF717 Missense_Mutation p.I580M 0.25 tolerated(0.17) possibly_damaging(0.491) TCGA-2W-A8YY-01 3 7678029 7678029 G - GRM7 Intron 0.09 TCGA-2W-A8YY-01 3 78647116 78647117 - G ROBO1 3'UTR 0.08 TCGA-2W-A8YY-01 3 78676490 78676490 G A ROBO1 Nonsense_Mutation p.Q1286* 0.17 TCGA-2W-A8YY-01 3 78706347 78706347 T C ROBO1 Missense_Mutation p.I839V 0.26 tolerated(0.29) possibly_damaging(0.881) TCGA-2W-A8YY-01 3 78719383 78719383 T C ROBO1 Missense_Mutation p.T471A 0.27 deleterious(0.02) probably_damaging(0.977) TCGA-2W-A8YY-01 3 81754694 81754694 C A GBE1 Missense_Mutation p.G72C 0.09 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 3 8590262 8590262 G A LMCD1 Silent p.Q132Q 0.48 TCGA-2W-A8YY-01 3 86010775 86010775 G T CADM2 Silent p.A309A 0.37 TCGA-2W-A8YY-01 3 86996143 86996143 G A VGLL3 3'UTR 0.13 TCGA-2W-A8YY-01 3 87276623 87276623 C T CHMP2B 5'UTR 0.39 TCGA-2W-A8YY-01 3 87313583 87313583 C T POU1F1 Silent p.L124L 0.24 TCGA-2W-A8YY-01 3 8787889 8787889 C T CAV3 3'UTR 0.40 TCGA-2W-A8YY-01 3 88040601 88040601 T C HTR1F Silent p.G234G 0.38 TCGA-2W-A8YY-01 3 88041720 88041720 G A HTR1F 3'UTR 0.43 TCGA-2W-A8YY-01 3 88103848 88103849 - A CGGBP1 3'UTR 0.25 TCGA-2W-A8YY-01 3 88205180 88205180 G T C3orf38 Nonsense_Mutation p.E129* 0.44 TCGA-2W-A8YY-01 3 88205476 88205476 T A C3orf38 Silent p.S227S 0.38 TCGA-2W-A8YY-01 3 89259601 89259601 G A EPHA3 Missense_Mutation p.E249K 0.44 deleterious(0) benign(0.113) TCGA-2W-A8YY-01 3 9022457 9022457 C T SRGAP3 3'UTR 0.30 TCGA-2W-A8YY-01 3 9034590 9034590 C T SRGAP3 Missense_Mutation p.R853Q 0.44 deleterious(0.02) probably_damaging(0.978) TCGA-2W-A8YY-01 3 9034591 9034591 G A SRGAP3 Nonsense_Mutation p.R853* 0.28 TCGA-2W-A8YY-01 3 9089079 9089079 G A SRGAP3 Silent p.G468G 0.23 TCGA-2W-A8YY-01 3 9121754 9121754 C T SRGAP3 Silent p.L147L 0.40 TCGA-2W-A8YY-01 3 93624947 93624947 A G PROS1 Silent p.D129D 0.35 TCGA-2W-A8YY-01 3 93813907 93813907 C T NSUN3 Nonsense_Mutation p.R218* 0.31 TCGA-2W-A8YY-01 3 9475596 9475596 A G SETD5 Missense_Mutation p.T47A 0.40 tolerated(0.5) benign(0.001) TCGA-2W-A8YY-01 3 9483371 9483371 G A SETD5 Missense_Mutation p.R302H 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 9512508 9512508 A G SETD5 Silent p.E1030E 0.50 TCGA-2W-A8YY-01 3 9593979 9593979 C T LHFPL4 Missense_Mutation p.A129T 0.50 deleterious(0) possibly_damaging(0.605) TCGA-2W-A8YY-01 3 96533602 96533602 C T EPHA6 Silent p.R45R 0.37 TCGA-2W-A8YY-01 3 96706243 96706243 G A EPHA6 Missense_Mutation p.E174K 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-2W-A8YY-01 3 96706499 96706499 G A EPHA6 Missense_Mutation p.R259H 0.50 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 3 96963086 96963086 T C EPHA6 Missense_Mutation p.S521P 0.38 tolerated(0.12) possibly_damaging(0.527) TCGA-2W-A8YY-01 3 97592244 97592244 C A CRYBG3 Missense_Mutation p.L736I 0.28 TCGA-2W-A8YY-01 3 97596754 97596754 A G CRYBG3 Missense_Mutation p.Q291R 0.12 deleterious(0.03) probably_damaging(0.919) TCGA-2W-A8YY-01 3 97611752 97611752 A G CRYBG3 Missense_Mutation p.S549G 0.31 deleterious(0.03) possibly_damaging(0.472) TCGA-2W-A8YY-01 3 97631110 97631110 C A CRYBG3 Missense_Mutation p.L754I 0.32 tolerated(0.13) possibly_damaging(0.698) TCGA-2W-A8YY-01 3 97663177 97663177 C A CRYBG3 3'UTR 0.35 TCGA-2W-A8YY-01 3 97669706 97669706 G A MINA Missense_Mutation p.T271I 0.38 tolerated(0.5) benign(0.005) TCGA-2W-A8YY-01 3 9781122 9781122 C T BRPF1 Missense_Mutation p.R347C 0.29 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 3 9781415 9781415 C T BRPF1 Silent p.C444C 0.44 TCGA-2W-A8YY-01 3 9782575 9782575 C T BRPF1 Missense_Mutation p.R558C 0.54 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 3 97869049 97869049 G A OR5H14 Missense_Mutation p.E274K 0.46 tolerated(0.28) benign(0.158) TCGA-2W-A8YY-01 3 97983688 97983688 C A OR5H6 Missense_Mutation p.S187Y 0.08 deleterious(0.03) benign(0.429) TCGA-2W-A8YY-01 3 9798766 9798766 C T OGG1 Intron 0.25 TCGA-2W-A8YY-01 3 9802355 9802355 C T CAMK1 Missense_Mutation p.D244N 0.33 tolerated(0.06) possibly_damaging(0.775) TCGA-2W-A8YY-01 3 98307690 98307690 G A CPOX Nonsense_Mutation p.Q274* 0.34 TCGA-2W-A8YY-01 3 9848374 9848374 C A ARPC4 3'Flank 0.43 TCGA-2W-A8YY-01 3 98512525 98512525 T C ST3GAL6 Missense_Mutation p.Y306H 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 3 98515245 98515245 C A DCBLD2 3'UTR 0.48 TCGA-2W-A8YY-01 3 9867509 9867509 G A TTLL3 Missense_Mutation p.D394N 0.41 tolerated(0.23) benign(0.008) TCGA-2W-A8YY-01 3 9877176 9877176 C T TTLL3 3'Flank 0.44 TCGA-2W-A8YY-01 3 9883622 9883622 G A RPUSD3 Intron 0.40 TCGA-2W-A8YY-01 3 9911716 9911716 G A CIDEC Missense_Mutation p.A145V 0.43 tolerated(0.21) benign(0.015) TCGA-2W-A8YY-01 3 99509753 99509753 A G COL8A1 Missense_Mutation p.H76R 0.22 tolerated_low_confidence(0.58) unknown(0) TCGA-2W-A8YY-01 3 99513950 99513950 G A COL8A1 Missense_Mutation p.G402D 0.29 deleterious(0) unknown(0) TCGA-2W-A8YY-01 3 99536809 99536809 G A CMSS1 5'UTR 0.11 TCGA-2W-A8YY-01 3 99742221 99742221 A G FILIP1L Intron 0.47 TCGA-2W-A8YY-01 3 9984507 9984507 G A CRELD1 Silent p.E248E 0.24 TCGA-2W-A8YY-01 3 99891167 99891167 C T CMSS1 Missense_Mutation p.A196V 0.28 deleterious(0) benign(0.04) TCGA-2W-A8YY-01 4 100212113 100212113 C A ADH1A 5'UTR 0.14 TCGA-2W-A8YY-01 4 100268280 100268280 G A ADH1C Missense_Mutation p.R48C 0.11 possibly_damaging(0.776) TCGA-2W-A8YY-01 4 100350697 100350697 G A ADH7 Missense_Mutation p.R58C 0.60 deleterious(0.04) benign(0.043) TCGA-2W-A8YY-01 4 100543977 100543977 C T MTTP Missense_Mutation p.P886L 0.13 deleterious(0.02) benign(0.079) TCGA-2W-A8YY-01 4 100805217 100805217 A G LAMTOR3 Splice_Site p.X101_splice 0.10 TCGA-2W-A8YY-01 4 100826753 100826753 C T DNAJB14 Splice_Site p.X281_splice 0.10 TCGA-2W-A8YY-01 4 100829906 100829906 T C DNAJB14 Missense_Mutation p.D200G 0.15 deleterious(0) probably_damaging(0.96) TCGA-2W-A8YY-01 4 10084754 10084754 C T WDR1 Missense_Mutation p.G363D 0.46 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 4 10084780 10084780 C T WDR1 Silent p.G354G 0.33 TCGA-2W-A8YY-01 4 100851702 100851702 G A DNAJB14 Silent p.G70G 0.15 TCGA-2W-A8YY-01 4 10099361 10099361 G A WDR1 Missense_Mutation p.P178S 0.37 deleterious(0) benign(0.139) TCGA-2W-A8YY-01 4 1017612 1017612 G A FGFRL1 Silent p.P147P 0.33 TCGA-2W-A8YY-01 4 1018378 1018378 C T FGFRL1 Missense_Mutation p.A333V 0.64 deleterious(0.01) probably_damaging(0.99) TCGA-2W-A8YY-01 4 1018890 1018890 C T FGFRL1 Missense_Mutation p.R424C 0.21 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 4 1018951 1018951 T C FGFRL1 Missense_Mutation p.V444A 0.42 tolerated(0.97) benign(0) TCGA-2W-A8YY-01 4 101946038 101946038 G A PPP3CA 3'UTR 0.44 TCGA-2W-A8YY-01 4 102030222 102030222 A C PPP3CA Missense_Mutation p.I91M 0.37 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 4 103498108 103498108 G A NFKB1 Silent p.A161A 0.29 TCGA-2W-A8YY-01 4 103717079 103717079 T C UBE2D3 3'Flank 0.44 TCGA-2W-A8YY-01 4 103748075 103748075 G A UBE2D3 Intron 0.11 TCGA-2W-A8YY-01 4 103970140 103970140 G A SLC9B2 Missense_Mutation p.S208F 0.38 deleterious(0.01) probably_damaging(0.982) TCGA-2W-A8YY-01 4 104095968 104095968 C T CENPE Missense_Mutation p.M524I 0.11 benign(0.006) TCGA-2W-A8YY-01 4 104101622 104101622 G T CENPE Missense_Mutation p.S363Y 0.19 possibly_damaging(0.907) TCGA-2W-A8YY-01 4 104640397 104640397 C T TACR3 Missense_Mutation p.A146T 0.35 deleterious(0) possibly_damaging(0.861) TCGA-2W-A8YY-01 4 106161161 106161161 G A TET2 Intron 0.67 TCGA-2W-A8YY-01 4 106163586 106163586 G T TET2 Intron 0.40 TCGA-2W-A8YY-01 4 106196213 106196213 C T TET2 Nonsense_Mutation p.R1516* 0.67 TCGA-2W-A8YY-01 4 106377403 106377403 A G PPA2 Intron 0.17 TCGA-2W-A8YY-01 4 107268827 107268827 T C AIMP1 Missense_Mutation p.M330T 0.20 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 4 107847066 107847066 C T DKK2 Missense_Mutation p.R88K 0.56 tolerated(0.42) benign(0.006) TCGA-2W-A8YY-01 4 107956585 107956585 G A DKK2 Missense_Mutation p.A55V 0.31 tolerated(0.19) benign(0.042) TCGA-2W-A8YY-01 4 108816768 108816768 C A SGMS2 Missense_Mutation p.P20H 0.53 tolerated(0.55) benign(0) TCGA-2W-A8YY-01 4 109000646 109000646 A G LEF1 Splice_Site p.X282_splice 0.15 TCGA-2W-A8YY-01 4 109002758 109002758 C T LEF1 Missense_Mutation p.D236N 0.63 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 4 109088779 109088779 C T LEF1 Missense_Mutation p.D49N 0.47 tolerated(0.05) probably_damaging(0.999) TCGA-2W-A8YY-01 4 109680960 109680960 G A ETNPPL Missense_Mutation p.R94C 0.46 deleterious(0.01) benign(0.444) TCGA-2W-A8YY-01 4 110384729 110384729 C T SEC24B Missense_Mutation p.S269L 0.63 tolerated_low_confidence(0.11) benign(0.003) TCGA-2W-A8YY-01 4 110661933 110661933 T G CFI 3'UTR 0.16 TCGA-2W-A8YY-01 4 110662118 110662118 T G CFI Missense_Mutation p.K561N 0.17 deleterious(0) possibly_damaging(0.868) TCGA-2W-A8YY-01 4 110667516 110667516 C T CFI Missense_Mutation p.A431T 0.20 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 4 1107297 1107297 C T RNF212 5'UTR 0.44 TCGA-2W-A8YY-01 4 110756618 110756618 G A RRH Missense_Mutation p.V132I 0.67 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 4 110763642 110763642 C T RRH Silent p.I246I 0.56 TCGA-2W-A8YY-01 4 110970838 110970838 C T ELOVL6 3'UTR 0.59 TCGA-2W-A8YY-01 4 111119684 111119684 C T ELOVL6 5'UTR 0.32 TCGA-2W-A8YY-01 4 111542489 111542489 A G PITX2 Missense_Mutation p.V81A 0.08 tolerated(0.69) benign(0) TCGA-2W-A8YY-01 4 111558119 111558119 G A PITX2 5'UTR 0.19 TCGA-2W-A8YY-01 4 113352968 113352968 C T ALPK1 Silent p.C755C 0.63 TCGA-2W-A8YY-01 4 113461023 113461023 G A C4orf21 Silent p.C2056C 0.43 TCGA-2W-A8YY-01 4 113539377 113539377 C A C4orf21 Missense_Mutation p.E607D 0.19 tolerated(0.08) probably_damaging(0.978) TCGA-2W-A8YY-01 4 113578449 113578449 C T LARP7 Missense_Mutation p.A579V 0.51 deleterious(0.01) possibly_damaging(0.726) TCGA-2W-A8YY-01 4 11400914 11400914 G A HS3ST1 Missense_Mutation p.P239L 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-2W-A8YY-01 4 11401089 11401089 C T HS3ST1 Missense_Mutation p.D181N 0.38 tolerated(0.63) benign(0.001) TCGA-2W-A8YY-01 4 11401425 11401425 C T HS3ST1 Missense_Mutation p.A69T 0.12 deleterious(0) possibly_damaging(0.905) TCGA-2W-A8YY-01 4 11401485 11401485 C T HS3ST1 Missense_Mutation p.G49S 0.14 tolerated(0.14) benign(0.035) TCGA-2W-A8YY-01 4 114158282 114158282 C A ANK2 Missense_Mutation p.A208D 0.41 probably_damaging(0.997) TCGA-2W-A8YY-01 4 114251491 114251491 A G ANK2 Missense_Mutation p.K997R 0.12 probably_damaging(0.991) TCGA-2W-A8YY-01 4 114253203 114253203 G A ANK2 Silent p.G1067G 0.65 TCGA-2W-A8YY-01 4 114276314 114276314 C T ANK2 Silent p.L2180L 0.18 TCGA-2W-A8YY-01 4 114276889 114276889 C T ANK2 Missense_Mutation p.S2372F 0.67 possibly_damaging(0.851) TCGA-2W-A8YY-01 4 114303691 114303691 C A ANK2 3'UTR 0.53 TCGA-2W-A8YY-01 4 114824656 114824656 C T ARSJ Missense_Mutation p.G192R 0.61 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 115858492 115858492 G A NDST4 Silent p.F463F 0.14 TCGA-2W-A8YY-01 4 118975685 118975685 C A NDST3 Missense_Mutation p.S207Y 0.42 deleterious(0.01) possibly_damaging(0.812) TCGA-2W-A8YY-01 4 119229728 119229728 A - PRSS12 Frame_Shift_Del p.P499Lfs*4 0.21 TCGA-2W-A8YY-01 4 119474998 119474998 T G CEP170P1 RNA 0.61 TCGA-2W-A8YY-01 4 119552449 119552449 A G RP11-384K6.6 RNA 0.36 TCGA-2W-A8YY-01 4 119644196 119644196 G A SEC24D 3'UTR 0.40 TCGA-2W-A8YY-01 4 119686044 119686044 G A SEC24D Silent p.D403D 0.11 TCGA-2W-A8YY-01 4 119727045 119727045 C T SEC24D Missense_Mutation p.G289D 0.41 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 4 119951286 119951286 C T SYNPO2 Silent p.D452D 0.11 TCGA-2W-A8YY-01 4 119952571 119952571 T C SYNPO2 Missense_Mutation p.S881P 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 119953254 119953254 T A SYNPO2 Intron 0.76 TCGA-2W-A8YY-01 4 120189470 120189470 G T USP53 Nonsense_Mutation p.G395* 0.63 TCGA-2W-A8YY-01 4 120194822 120194822 G A USP53 Missense_Mutation p.R737H 0.62 tolerated_low_confidence(0.66) benign(0) TCGA-2W-A8YY-01 4 120218966 120218966 T C C4orf3 3'UTR 0.14 TCGA-2W-A8YY-01 4 120240244 120240244 A C FABP2 Silent p.T117T 0.60 TCGA-2W-A8YY-01 4 120415773 120415773 G A PDE5A 3'UTR 0.10 TCGA-2W-A8YY-01 4 120427083 120427083 G A PDE5A Nonsense_Mutation p.R732* 0.16 TCGA-2W-A8YY-01 4 1208231 1208231 C T CTBP1 Missense_Mutation p.A265T 0.09 deleterious(0.03) possibly_damaging(0.618) TCGA-2W-A8YY-01 4 122589538 122589538 C A ANXA5 3'UTR 0.44 TCGA-2W-A8YY-01 4 122740679 122740679 C A CCNA2 Missense_Mutation p.D284Y 0.17 deleterious(0.01) possibly_damaging(0.892) TCGA-2W-A8YY-01 4 122775960 122775960 T A BBS7 Missense_Mutation p.D206V 0.22 tolerated(0.11) benign(0.04) TCGA-2W-A8YY-01 4 123109156 123109156 A C KIAA1109 Missense_Mutation p.Q245P 0.10 benign(0.115) TCGA-2W-A8YY-01 4 123176385 123176385 C A KIAA1109 Missense_Mutation p.L2109I 0.15 probably_damaging(0.996) TCGA-2W-A8YY-01 4 123193320 123193320 C T KIAA1109 Missense_Mutation p.R2736W 0.67 possibly_damaging(0.794) TCGA-2W-A8YY-01 4 123193538 123193538 T C KIAA1109 Silent p.F2808F 0.55 TCGA-2W-A8YY-01 4 123268797 123268797 A G KIAA1109 Missense_Mutation p.H4331R 0.29 possibly_damaging(0.833) TCGA-2W-A8YY-01 4 1235203 1235203 T C CTBP1 Intron 0.43 TCGA-2W-A8YY-01 4 123663089 123663089 G A BBS12 Missense_Mutation p.M14I 0.26 tolerated(1) benign(0) TCGA-2W-A8YY-01 4 123813973 123813973 A G NUDT6 3'UTR 0.70 TCGA-2W-A8YY-01 4 123838757 123838757 C T NUDT6 Missense_Mutation p.C114Y 0.24 deleterious(0.04) benign(0.054) TCGA-2W-A8YY-01 4 123859381 123859381 A G SPATA5 Missense_Mutation p.T479A 0.25 tolerated(0.1) probably_damaging(0.997) TCGA-2W-A8YY-01 4 1245206 1245206 C T CTBP1 5'Flank 0.30 TCGA-2W-A8YY-01 4 1245711 1245711 G A CTBP1 5'Flank 0.49 TCGA-2W-A8YY-01 4 125592877 125592877 G A ANKRD50 Nonsense_Mutation p.R519* 0.66 TCGA-2W-A8YY-01 4 126315100 126315100 A C FAT4 Intron 0.54 TCGA-2W-A8YY-01 4 126412049 126412049 C T FAT4 Missense_Mutation p.A4691V 0.11 benign(0.343) TCGA-2W-A8YY-01 4 128564917 128564917 A - INTU Frame_Shift_Del p.N132Ifs*11 0.68 TCGA-2W-A8YY-01 4 128608910 128608910 C T INTU Missense_Mutation p.A446V 0.59 tolerated(0.25) benign(0.005) TCGA-2W-A8YY-01 4 128651929 128651929 C T SLC25A31 Nonsense_Mutation p.Q77* 0.09 TCGA-2W-A8YY-01 4 128807085 128807085 C T PLK4 Missense_Mutation p.A187V 0.21 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 4 128807637 128807637 G A PLK4 Missense_Mutation p.R371Q 0.81 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 4 128841862 128841862 G A MFSD8 Missense_Mutation p.L494F 0.13 tolerated(0.09) benign(0.039) TCGA-2W-A8YY-01 4 128861055 128861055 G A MFSD8 Silent p.S217S 0.57 TCGA-2W-A8YY-01 4 129793990 129793990 G T JADE1 3'UTR 0.16 TCGA-2W-A8YY-01 4 129961357 129961357 C A SCLT1 Intron 0.16 TCGA-2W-A8YY-01 4 1332283 1332283 G A MAEA Missense_Mutation p.A325T 0.14 deleterious(0.02) possibly_damaging(0.589) TCGA-2W-A8YY-01 4 134084210 134084210 T C PCDH10 Missense_Mutation p.V959A 0.20 tolerated(1) benign(0.338) TCGA-2W-A8YY-01 4 1347129 1347129 G A UVSSA Missense_Mutation p.D288N 0.14 tolerated(0.06) possibly_damaging(0.781) TCGA-2W-A8YY-01 4 135121050 135121050 C T PABPC4L 3'UTR 0.69 TCGA-2W-A8YY-01 4 135121241 135121241 C T PABPC4L Missense_Mutation p.E370K 0.21 deleterious(0.01) possibly_damaging(0.555) TCGA-2W-A8YY-01 4 13543773 13543773 T C NKX3-2 Silent p.V282V 0.51 TCGA-2W-A8YY-01 4 13544009 13544009 G A NKX3-2 Missense_Mutation p.P204S 0.38 tolerated(0.13) probably_damaging(0.922) TCGA-2W-A8YY-01 4 13597495 13597495 G A BOD1L1 Missense_Mutation p.P2698L 0.32 benign(0.004) TCGA-2W-A8YY-01 4 1359943 1359943 G A UVSSA Intron 0.45 TCGA-2W-A8YY-01 4 13604656 13604656 C T BOD1L1 Missense_Mutation p.V1290M 0.39 benign(0.104) TCGA-2W-A8YY-01 4 13606615 13606615 A G BOD1L1 Missense_Mutation p.S637P 0.28 possibly_damaging(0.878) TCGA-2W-A8YY-01 4 13628985 13628985 G A BOD1L1 Missense_Mutation p.A76V 0.45 possibly_damaging(0.666) TCGA-2W-A8YY-01 4 138451934 138451934 C T PCDH18 Missense_Mutation p.A437T 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 140310496 140310496 A G NAA15 3'UTR 0.58 TCGA-2W-A8YY-01 4 140587129 140587129 G A MGST2 5'UTR 0.52 TCGA-2W-A8YY-01 4 140640596 140640596 C T MAML3 Missense_Mutation p.G1100R 0.14 possibly_damaging(0.541) TCGA-2W-A8YY-01 4 140810679 140810679 C T MAML3 Silent p.Q637Q 0.12 TCGA-2W-A8YY-01 4 141214509 141214509 G A RP11-425I13.3 RNA 0.10 TCGA-2W-A8YY-01 4 141489868 141489868 C T UCP1 Missense_Mutation p.A6T 0.21 tolerated(0.45) benign(0.008) TCGA-2W-A8YY-01 4 141542166 141542166 C T TBC1D9 3'UTR 0.44 TCGA-2W-A8YY-01 4 141548657 141548657 G A TBC1D9 Missense_Mutation p.P946L 0.19 tolerated(0.06) possibly_damaging(0.548) TCGA-2W-A8YY-01 4 141591909 141591909 C T TBC1D9 Missense_Mutation p.E411K 0.52 tolerated(0.6) benign(0.146) TCGA-2W-A8YY-01 4 142640533 142640533 G T IL15 5'UTR 0.41 TCGA-2W-A8YY-01 4 143130174 143130174 T C INPP4B Missense_Mutation p.Q281R 0.13 tolerated(0.4) possibly_damaging(0.757) TCGA-2W-A8YY-01 4 144134992 144134992 T C USP38 Silent p.C621C 0.39 TCGA-2W-A8YY-01 4 144135616 144135616 T G USP38 Silent p.T829T 0.41 TCGA-2W-A8YY-01 4 144361306 144361306 C T GAB1 Silent p.P452P 0.56 TCGA-2W-A8YY-01 4 144387306 144387306 G A GAB1 Silent p.K648K 0.16 TCGA-2W-A8YY-01 4 144387313 144387313 G T GAB1 Nonsense_Mutation p.G651* 0.52 TCGA-2W-A8YY-01 4 144442700 144442700 G A SMARCA5 Missense_Mutation p.R124H 0.54 tolerated(0.07) benign(0.022) TCGA-2W-A8YY-01 4 144461562 144461562 G A SMARCA5 Missense_Mutation p.R606H 0.35 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 4 144467085 144467085 G A SMARCA5 Missense_Mutation p.R802Q 0.60 tolerated(0.37) benign(0.051) TCGA-2W-A8YY-01 4 144468613 144468613 G A SMARCA5 Missense_Mutation p.R910K 0.52 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 4 144481346 144481346 A C SMARCA5 3'Flank 0.62 TCGA-2W-A8YY-01 4 145032480 145032480 T C GYPA 3'UTR 0.16 TCGA-2W-A8YY-01 4 146044705 146044705 C T ABCE1 Silent p.R531R 0.61 TCGA-2W-A8YY-01 4 146055618 146055618 G T OTUD4 3'UTR 0.50 TCGA-2W-A8YY-01 4 146058685 146058685 C T OTUD4 Missense_Mutation p.R1016Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 4 146475004 146475004 C T SMAD1 Nonsense_Mutation p.Q356* 0.21 TCGA-2W-A8YY-01 4 146576598 146576598 C T MMAA 3'UTR 0.12 TCGA-2W-A8YY-01 4 146681963 146681963 G A ZNF827 3'UTR 0.12 TCGA-2W-A8YY-01 4 146806954 146806954 G A ZNF827 Silent p.A541A 0.16 TCGA-2W-A8YY-01 4 147176563 147176563 T C SLC10A7 3'UTR 0.15 TCGA-2W-A8YY-01 4 147204409 147204409 G A SLC10A7 Missense_Mutation p.S261L 0.63 tolerated(0.68) benign(0.001) TCGA-2W-A8YY-01 4 147561227 147561227 C T POU4F2 Missense_Mutation p.A166V 0.52 tolerated_low_confidence(0.37) benign(0.236) TCGA-2W-A8YY-01 4 147561355 147561355 G A POU4F2 Missense_Mutation p.D209N 0.54 tolerated(0.05) benign(0.446) TCGA-2W-A8YY-01 4 148582149 148582149 T G PRMT10 Missense_Mutation p.N332H 0.11 tolerated(0.13) benign(0.289) TCGA-2W-A8YY-01 4 148601567 148601567 C T PRMT10 Missense_Mutation p.R82Q 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 4 149000040 149000040 C A NR3C2 3'UTR 0.47 TCGA-2W-A8YY-01 4 149001595 149001595 G A NR3C2 3'UTR 0.52 TCGA-2W-A8YY-01 4 149357269 149357269 C T NR3C2 Silent p.S248S 0.52 TCGA-2W-A8YY-01 4 15068075 15068075 G A CPEB2 3'UTR 0.39 TCGA-2W-A8YY-01 4 15068406 15068406 G A CPEB2 3'UTR 0.33 TCGA-2W-A8YY-01 4 15068442 15068442 A C CPEB2 3'UTR 0.37 TCGA-2W-A8YY-01 4 15069659 15069659 T G CPEB2 3'UTR 0.41 TCGA-2W-A8YY-01 4 15071409 15071409 C T CPEB2 3'UTR 0.23 TCGA-2W-A8YY-01 4 151153866 151153866 G A DCLK2 Silent p.S501S 0.25 TCGA-2W-A8YY-01 4 151186021 151186021 C T LRBA 3'UTR 0.62 TCGA-2W-A8YY-01 4 151186163 151186163 G A LRBA 3'UTR 0.67 TCGA-2W-A8YY-01 4 151504187 151504187 C T MAB21L2 Silent p.I2I 0.69 TCGA-2W-A8YY-01 4 151504662 151504662 C T MAB21L2 Missense_Mutation p.R161C 0.69 tolerated(0.08) benign(0.117) TCGA-2W-A8YY-01 4 151729486 151729486 C T LRBA Silent p.P1790P 0.17 TCGA-2W-A8YY-01 4 152198351 152198351 G A PRSS48 Silent p.T9T 0.58 TCGA-2W-A8YY-01 4 152203406 152203406 T C PRSS48 Missense_Mutation p.Y108H 0.42 tolerated(0.4) benign(0.001) TCGA-2W-A8YY-01 4 152571407 152571407 C A FAM160A1 Missense_Mutation p.S738R 0.20 tolerated(0.38) benign(0.001) TCGA-2W-A8YY-01 4 152626409 152626409 T C PET112 Missense_Mutation p.Q297R 0.59 deleterious(0.05) benign(0.031) TCGA-2W-A8YY-01 4 152682024 152682024 G C PET112 Missense_Mutation p.N37K 0.58 tolerated_low_confidence(0.19) benign(0.008) TCGA-2W-A8YY-01 4 153332733 153332733 C A FBXW7 Nonsense_Mutation p.G75* 0.12 TCGA-2W-A8YY-01 4 153547445 153547445 T - TMEM154 3'UTR 0.37 TCGA-2W-A8YY-01 4 154243893 154243893 G A TRIM2 Missense_Mutation p.V626M 0.54 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 4 154258872 154258872 T - TRIM2 3'UTR 0.17 TCGA-2W-A8YY-01 4 154335924 154335924 C A MND1 Missense_Mutation p.S178Y 0.51 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 4 15437520 15437520 C T C1QTNF7 Silent p.S58S 0.26 TCGA-2W-A8YY-01 4 154649450 154649450 G A RNF175 Missense_Mutation p.R104W 0.60 deleterious(0.01) possibly_damaging(0.908) TCGA-2W-A8YY-01 4 154709685 154709685 G A SFRP2 Silent p.P101P 0.71 TCGA-2W-A8YY-01 4 155254427 155254427 G A DCHS2 Missense_Mutation p.A479V 0.26 tolerated(1) benign(0) TCGA-2W-A8YY-01 4 155264711 155264711 G A DCHS2 Silent p.L296L 0.45 TCGA-2W-A8YY-01 4 155410936 155410936 C T DCHS2 Silent p.T524T 0.52 TCGA-2W-A8YY-01 4 155411202 155411202 C T DCHS2 Missense_Mutation p.V436M 0.18 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 4 155457775 155457775 G A PLRG1 3'UTR 0.10 TCGA-2W-A8YY-01 4 155461200 155461200 C T PLRG1 Nonsense_Mutation p.W315* 0.18 TCGA-2W-A8YY-01 4 155505172 155505172 G T FGA 3'UTR 0.55 TCGA-2W-A8YY-01 4 15559041 15559041 C T CC2D2A Missense_Mutation p.L914F 0.34 deleterious(0.02) probably_damaging(0.976) TCGA-2W-A8YY-01 4 15599067 15599067 C A CC2D2A Missense_Mutation p.A1492D 0.28 tolerated(0.06) benign(0.025) TCGA-2W-A8YY-01 4 156135369 156135369 C A NPY2R Missense_Mutation p.A93D 0.64 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 156717589 156717589 A G GUCY1B3 Missense_Mutation p.S302G 0.20 tolerated(0.1) benign(0.008) TCGA-2W-A8YY-01 4 156841320 156841320 G T TDO2 3'UTR 0.37 TCGA-2W-A8YY-01 4 156864397 156864397 C T CTSO Missense_Mutation p.R52Q 0.38 tolerated(0.15) benign(0.006) TCGA-2W-A8YY-01 4 15780177 15780177 G A CD38 Missense_Mutation p.R47H 0.43 tolerated(0.35) benign(0) TCGA-2W-A8YY-01 4 15780237 15780237 G T CD38 Missense_Mutation p.C67F 0.24 deleterious(0) probably_damaging(0.949) TCGA-2W-A8YY-01 4 158224838 158224838 C T GRIA2 Missense_Mutation p.H122Y 0.58 tolerated(0.05) possibly_damaging(0.458) TCGA-2W-A8YY-01 4 158284719 158284719 G A GRIA2 3'UTR 0.61 TCGA-2W-A8YY-01 4 158284910 158284910 A G GRIA2 3'UTR 0.36 TCGA-2W-A8YY-01 4 158285945 158285945 A G GRIA2 3'UTR 0.19 TCGA-2W-A8YY-01 4 159590812 159590812 G A C4orf46 Missense_Mutation p.R99W 0.62 tolerated_low_confidence(0.05) benign(0.409) TCGA-2W-A8YY-01 4 159620232 159620232 G C ETFDH Missense_Mutation p.G356R 0.10 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 4 159631944 159631944 C T PPID Nonsense_Mutation p.W317* 0.14 TCGA-2W-A8YY-01 4 159790472 159790472 G T FNIP2 Missense_Mutation p.S895I 0.15 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 159894256 159894256 C T C4orf45 Missense_Mutation p.R91K 0.52 deleterious(0.04) possibly_damaging(0.877) TCGA-2W-A8YY-01 4 160243561 160243561 C T RAPGEF2 Nonsense_Mutation p.R145* 0.09 TCGA-2W-A8YY-01 4 16026840 16026840 C T PROM1 Missense_Mutation p.R202Q 0.40 tolerated(0.26) benign(0.317) TCGA-2W-A8YY-01 4 160277151 160277151 G A RAPGEF2 Missense_Mutation p.A1439T 0.20 tolerated_low_confidence(0.65) benign(0.003) TCGA-2W-A8YY-01 4 16165090 16165090 T C TAPT1 Missense_Mutation p.I515M 0.13 tolerated(0.2) benign(0.128) TCGA-2W-A8YY-01 4 164061530 164061530 G A NAF1 Silent p.F241F 0.41 TCGA-2W-A8YY-01 4 164085488 164085488 A G NAF1 Missense_Mutation p.S141P 0.63 deleterious(0.01) probably_damaging(0.969) TCGA-2W-A8YY-01 4 164394841 164394841 G T TKTL2 Missense_Mutation p.L16M 0.34 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 4 164440684 164440684 G A TMA16 3'UTR 0.17 TCGA-2W-A8YY-01 4 164775297 164775297 T C MARCH1 5'UTR 0.38 TCGA-2W-A8YY-01 4 165798410 165798410 G A RP11-366M4.3 RNA 0.79 TCGA-2W-A8YY-01 4 16587603 16587603 T C LDB2 Missense_Mutation p.Q186R 0.35 deleterious(0.02) possibly_damaging(0.737) TCGA-2W-A8YY-01 4 165961768 165961768 G T TRIM60 Nonsense_Mutation p.E182* 0.67 TCGA-2W-A8YY-01 4 166215529 166215529 T C KLHL2 Missense_Mutation p.V192A 0.66 deleterious(0.03) probably_damaging(0.96) TCGA-2W-A8YY-01 4 166254502 166254502 C A MSMO1 5'UTR 0.11 TCGA-2W-A8YY-01 4 166935661 166935661 C T TLL1 Missense_Mutation p.R331C 0.14 deleterious(0.01) benign(0.289) TCGA-2W-A8YY-01 4 166978380 166978380 C T TLL1 Nonsense_Mutation p.R589* 0.55 TCGA-2W-A8YY-01 4 166987000 166987000 G A TLL1 Missense_Mutation p.A725T 0.52 deleterious(0.01) probably_damaging(0.993) TCGA-2W-A8YY-01 4 167655739 167655739 C T SPOCK3 3'UTR 0.62 TCGA-2W-A8YY-01 4 167675849 167675849 C A SPOCK3 Missense_Mutation p.K250N 0.44 deleterious(0) possibly_damaging(0.875) TCGA-2W-A8YY-01 4 169214971 169214971 C T DDX60 Silent p.E283E 0.54 TCGA-2W-A8YY-01 4 169215038 169215038 C T DDX60 Missense_Mutation p.R261H 0.14 tolerated(0.17) benign(0.049) TCGA-2W-A8YY-01 4 169343043 169343043 C T DDX60L Silent p.V754V 0.63 TCGA-2W-A8YY-01 4 169351672 169351672 C T DDX60L Missense_Mutation p.R545Q 0.09 tolerated(0.46) benign(0.001) TCGA-2W-A8YY-01 4 169362644 169362644 C A DDX60L Splice_Site p.X380_splice 0.16 TCGA-2W-A8YY-01 4 169433062 169433062 G A PALLD Missense_Mutation p.S136N 0.17 tolerated(0.18) benign(0.277) TCGA-2W-A8YY-01 4 1695065 1695065 C T SLBP 3'UTR 0.62 TCGA-2W-A8YY-01 4 169611776 169611776 C T PALLD Missense_Mutation p.A453V 0.14 deleterious(0.01) benign(0.015) TCGA-2W-A8YY-01 4 169848116 169848116 G A PALLD 3'Flank 0.53 TCGA-2W-A8YY-01 4 170611744 170611744 C A CLCN3 Missense_Mutation p.L224I 0.51 tolerated(0.12) possibly_damaging(0.615) TCGA-2W-A8YY-01 4 170618535 170618535 G A CLCN3 Missense_Mutation p.A405T 0.11 tolerated(0.45) probably_damaging(0.994) TCGA-2W-A8YY-01 4 170634240 170634241 - A CLCN3 Frame_Shift_Ins p.Q723Tfs*34 0.12 TCGA-2W-A8YY-01 4 1720184 1720184 C T TMEM129 Silent p.A125A 0.54 TCGA-2W-A8YY-01 4 1730165 1730165 G A TACC3 Missense_Mutation p.A346T 0.12 tolerated(0.45) benign(0.01) TCGA-2W-A8YY-01 4 17528445 17528445 G A CLRN2 Missense_Mutation p.V147I 0.54 tolerated(0.12) benign(0.003) TCGA-2W-A8YY-01 4 175429210 175429210 C A HPGD Intron 0.63 TCGA-2W-A8YY-01 4 17586682 17586682 G T LAP3 Missense_Mutation p.E209D 0.12 tolerated(0.2) benign(0.01) TCGA-2W-A8YY-01 4 175897560 175897560 G T ADAM29 Missense_Mutation p.R295I 0.61 tolerated(0.06) benign(0.179) TCGA-2W-A8YY-01 4 17590506 17590506 G A LAP3 Missense_Mutation p.E257K 0.31 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 4 176556023 176556023 C T GPM6A 3'UTR 0.33 TCGA-2W-A8YY-01 4 177061070 177061070 G A WDR17 Missense_Mutation p.A487T 0.57 deleterious(0) possibly_damaging(0.816) TCGA-2W-A8YY-01 4 17710791 17710791 C A FAM184B Missense_Mutation p.E206D 0.49 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 4 177136643 177136643 C A ASB5 3'UTR 0.19 TCGA-2W-A8YY-01 4 177190190 177190190 G T ASB5 Missense_Mutation p.L24M 0.13 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 4 177245355 177245355 A T SPCS3 Missense_Mutation p.N81Y 0.09 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 4 178272600 178272600 C T NEIL3 Silent p.S312S 0.56 TCGA-2W-A8YY-01 4 17846011 17846011 T - NCAPG 3'UTR 0.36 TCGA-2W-A8YY-01 4 17964602 17964602 T C LCORL Silent p.E97E 0.19 TCGA-2W-A8YY-01 4 183245273 183245273 C T TENM3 Missense_Mutation p.R34W 0.47 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-2W-A8YY-01 4 183245389 183245389 C T TENM3 Silent p.D72D 0.14 TCGA-2W-A8YY-01 4 1834518 1834518 G A LETM1 Missense_Mutation p.R345C 0.37 deleterious(0) possibly_damaging(0.908) TCGA-2W-A8YY-01 4 183549833 183549833 C T TENM3 Missense_Mutation p.T260I 0.17 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-2W-A8YY-01 4 183676234 183676234 C T TENM3 Missense_Mutation p.R1572C 0.21 deleterious(0.02) possibly_damaging(0.876) TCGA-2W-A8YY-01 4 183713498 183713498 C T TENM3 Silent p.A1891A 0.42 TCGA-2W-A8YY-01 4 183723436 183723437 - T TENM3 3'UTR 0.33 TCGA-2W-A8YY-01 4 184166576 184166576 A - WWC2 Frame_Shift_Del p.M206Cfs*17 0.20 TCGA-2W-A8YY-01 4 184203930 184203930 G T WWC2 Missense_Mutation p.E918D 0.41 tolerated(0.47) benign(0.002) TCGA-2W-A8YY-01 4 184239608 184239608 C T CLDN22 3'UTR 0.13 TCGA-2W-A8YY-01 4 184240915 184240915 C T CLDN22 Missense_Mutation p.V153I 0.61 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 4 184241570 184241570 A G CLDN22 5'UTR 0.14 TCGA-2W-A8YY-01 4 184627976 184627976 G T TRAPPC11 Silent p.G1024G 0.28 TCGA-2W-A8YY-01 4 184633774 184633774 G A TRAPPC11 Missense_Mutation p.D1127N 0.45 tolerated(0.08) benign(0.089) TCGA-2W-A8YY-01 4 185038033 185038033 C T ENPP6 Nonsense_Mutation p.W277* 0.55 TCGA-2W-A8YY-01 4 185550352 185550352 G A CASP3 3'UTR 0.47 TCGA-2W-A8YY-01 4 185550492 185550492 A C CASP3 Missense_Mutation p.F256L 0.35 tolerated(0.07) benign(0.368) TCGA-2W-A8YY-01 4 185941533 185941533 C T HELT Silent p.D197D 0.35 TCGA-2W-A8YY-01 4 186209195 186209195 C T SNX25 Missense_Mutation p.A210V 0.47 deleterious(0.03) benign(0.44) TCGA-2W-A8YY-01 4 186294091 186294091 C T LRP2BP Missense_Mutation p.G241E 0.14 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 186329586 186329586 A G UFSP2 Missense_Mutation p.Y279H 0.18 tolerated(0.28) benign(0.012) TCGA-2W-A8YY-01 4 186380421 186380421 C A CCDC110 Missense_Mutation p.Q440H 0.35 tolerated(0.66) benign(0.162) TCGA-2W-A8YY-01 4 186380555 186380555 C A CCDC110 Nonsense_Mutation p.E396* 0.39 TCGA-2W-A8YY-01 4 186435940 186435940 C T PDLIM3 Intron 0.13 TCGA-2W-A8YY-01 4 186548128 186548128 C T SORBS2 Silent p.E360E 0.73 TCGA-2W-A8YY-01 4 186573857 186573857 T A SORBS2 Missense_Mutation p.Y198F 0.61 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 4 186577874 186577874 C T SORBS2 Intron 0.27 TCGA-2W-A8YY-01 4 187074872 187074872 G A FAM149A Missense_Mutation p.A54T 0.46 tolerated(0.32) benign(0.086) TCGA-2W-A8YY-01 4 187179308 187179308 G A KLKB1 Nonsense_Mutation p.W620* 0.60 TCGA-2W-A8YY-01 4 187539400 187539400 G A FAT1 Silent p.A2780A 0.19 TCGA-2W-A8YY-01 4 187541548 187541548 G A FAT1 Silent p.H2064H 0.41 TCGA-2W-A8YY-01 4 187629338 187629338 G A FAT1 Silent p.R548R 0.39 TCGA-2W-A8YY-01 4 187629762 187629762 C T FAT1 Missense_Mutation p.G407E 0.64 benign(0.14) TCGA-2W-A8YY-01 4 187630443 187630443 G A FAT1 Missense_Mutation p.T180I 0.57 probably_damaging(0.971) TCGA-2W-A8YY-01 4 188924108 188924108 A G ZFP42 Silent p.L49L 0.23 TCGA-2W-A8YY-01 4 189022312 189022312 T C TRIML2 Silent p.R76R 0.33 TCGA-2W-A8YY-01 4 189068070 189068070 A G TRIML1 Silent p.L317L 0.15 TCGA-2W-A8YY-01 4 1902589 1902589 G A WHSC1 Missense_Mutation p.A70T 0.32 tolerated(0.32) benign(0.024) TCGA-2W-A8YY-01 4 1918681 1918681 G A WHSC1 Missense_Mutation p.V282I 0.54 deleterious(0.02) probably_damaging(0.976) TCGA-2W-A8YY-01 4 1941438 1941438 C T WHSC1 Missense_Mutation p.T605M 0.37 deleterious(0.02) benign(0.294) TCGA-2W-A8YY-01 4 1953878 1953878 G A WHSC1 Missense_Mutation p.C686Y 0.34 deleterious(0) possibly_damaging(0.704) TCGA-2W-A8YY-01 4 1957897 1957897 G A WHSC1 Missense_Mutation p.G955R 0.54 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 4 1976589 1976589 G T WHSC1 Splice_Site p.X1125_splice 0.21 TCGA-2W-A8YY-01 4 1976609 1976609 G A WHSC1 Missense_Mutation p.G1131D 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 1980649 1980649 G A WHSC1 3'UTR 0.39 TCGA-2W-A8YY-01 4 1985620 1985620 G A NELFA Silent p.T430T 0.36 TCGA-2W-A8YY-01 4 1991455 1991455 C T NELFA Missense_Mutation p.R186Q 0.43 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 4 20618656 20618656 C T SLIT2 Missense_Mutation p.P1324L 0.45 tolerated(0.33) benign(0.002) TCGA-2W-A8YY-01 4 20620392 20620392 A C SLIT2 Missense_Mutation p.E1450D 0.52 tolerated(0.05) benign(0.137) TCGA-2W-A8YY-01 4 20620470 20620470 G T SLIT2 Missense_Mutation p.K1476N 0.50 tolerated(0.08) probably_damaging(0.994) TCGA-2W-A8YY-01 4 2066513 2066513 G A NAT8L 3'UTR 0.10 TCGA-2W-A8YY-01 4 2158531 2158531 A C POLN Missense_Mutation p.L572R 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 4 22415316 22415316 C T GPR125 Missense_Mutation p.G644E 0.48 deleterious(0.01) probably_damaging(0.985) TCGA-2W-A8YY-01 4 2242086 2242086 C T HAUS3 Silent p.S196S 0.12 TCGA-2W-A8YY-01 4 22444334 22444334 C T GPR125 Missense_Mutation p.D287N 0.29 tolerated(0.11) benign(0.096) TCGA-2W-A8YY-01 4 22475446 22475446 A G GPR125 Missense_Mutation p.I93T 0.35 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 4 2272272 2272272 C T ZFYVE28 3'UTR 0.29 TCGA-2W-A8YY-01 4 23795692 23795692 T G PPARGC1A 3'UTR 0.37 TCGA-2W-A8YY-01 4 247745 247745 G A ZNF876P RNA 0.31 TCGA-2W-A8YY-01 4 248288 248288 C T ZNF876P RNA 0.39 TCGA-2W-A8YY-01 4 248681 248681 T - ZNF876P RNA 0.26 TCGA-2W-A8YY-01 4 25005336 25005336 G T LGI2 Missense_Mutation p.L459I 0.32 tolerated(0.08) benign(0.151) TCGA-2W-A8YY-01 4 25153635 25153635 C A SEPSECS Missense_Mutation p.V251F 0.27 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 4 25676135 25676135 G A SLC34A2 Missense_Mutation p.V448M 0.30 deleterious(0.02) probably_damaging(0.934) TCGA-2W-A8YY-01 4 26426052 26426052 T C RBPJ Silent p.G208G 0.34 TCGA-2W-A8YY-01 4 26661234 26661234 C T TBC1D19 Missense_Mutation p.R166C 0.34 tolerated(0.05) probably_damaging(0.912) TCGA-2W-A8YY-01 4 2696790 2696790 C A FAM193A Silent p.T779T 0.38 TCGA-2W-A8YY-01 4 27024458 27024458 G A STIM2 Missense_Mutation p.R702H 0.34 tolerated_low_confidence(0.08) benign(0.01) TCGA-2W-A8YY-01 4 2733619 2733619 A G FAM193A 3'UTR 0.38 TCGA-2W-A8YY-01 4 2901146 2901146 G A ADD1 Missense_Mutation p.R382Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 4 2916682 2916682 G A ADD1 Silent p.T590T 0.27 TCGA-2W-A8YY-01 4 3076556 3076556 G T HTT Missense_Mutation p.A2S 0.31 benign(0.364) TCGA-2W-A8YY-01 4 3133083 3133083 G A HTT Missense_Mutation p.R686H 0.29 possibly_damaging(0.902) TCGA-2W-A8YY-01 4 3237960 3237960 G A HTT Missense_Mutation p.R2957Q 0.31 possibly_damaging(0.722) TCGA-2W-A8YY-01 4 3242210 3242210 C A HTT 3'UTR 0.37 TCGA-2W-A8YY-01 4 3242276 3242276 G A HTT 3'UTR 0.39 TCGA-2W-A8YY-01 4 3318658 3318658 C T RGS12 Missense_Mutation p.A254V 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-2W-A8YY-01 4 3429984 3429984 C T RGS12 Intron 0.33 TCGA-2W-A8YY-01 4 3444826 3444826 C T HGFAC Silent p.G116G 0.46 TCGA-2W-A8YY-01 4 3445869 3445869 C T HGFAC Silent p.T193T 0.48 TCGA-2W-A8YY-01 4 3516544 3516544 G A LRPAP1 Missense_Mutation p.R316C 0.41 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 4 3526631 3526631 T C LRPAP1 Intron 0.23 TCGA-2W-A8YY-01 4 36149211 36149211 A G ARAP2 Missense_Mutation p.V1053A 0.45 tolerated(1) benign(0) TCGA-2W-A8YY-01 4 37445149 37445149 C T KIAA1239 Silent p.F513F 0.24 TCGA-2W-A8YY-01 4 37447660 37447660 C T KIAA1239 Silent p.I1350I 0.29 TCGA-2W-A8YY-01 4 37636526 37636526 C T RELL1 Silent p.T221T 0.45 TCGA-2W-A8YY-01 4 3769058 3769058 G A ADRA2C Missense_Mutation p.R242H 0.35 deleterious(0.02) probably_damaging(0.987) TCGA-2W-A8YY-01 4 376994 376994 A G ZNF141 Missense_Mutation p.T113A 0.10 tolerated_low_confidence(1) unknown(0) TCGA-2W-A8YY-01 4 38045987 38045987 C T TBC1D1 Missense_Mutation p.S473L 0.50 tolerated(0.28) benign(0.002) TCGA-2W-A8YY-01 4 38139098 38139098 C T TBC1D1 3'UTR 0.45 TCGA-2W-A8YY-01 4 38799564 38799564 T C TLR1 Missense_Mutation p.T297A 0.35 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 4 38799879 38799879 G A TLR1 Silent p.L192L 0.29 TCGA-2W-A8YY-01 4 38828640 38828640 G A TLR6 3'UTR 0.53 TCGA-2W-A8YY-01 4 38830439 38830439 G A TLR6 Missense_Mutation p.T219I 0.48 deleterious(0.03) benign(0.002) TCGA-2W-A8YY-01 4 39000426 39000426 T C TMEM156 Silent p.V64V 0.42 TCGA-2W-A8YY-01 4 39064478 39064478 G A KLHL5 Missense_Mutation p.R115Q 0.46 tolerated_low_confidence(0.77) benign(0.001) TCGA-2W-A8YY-01 4 39116995 39116995 A - KLHL5 Intron 0.17 TCGA-2W-A8YY-01 4 39233853 39233853 C A WDR19 Missense_Mutation p.D738E 0.50 tolerated(0.3) benign(0.005) TCGA-2W-A8YY-01 4 39293322 39293322 C A RFC1 Missense_Mutation p.E1036D 0.17 tolerated(1) benign(0.012) TCGA-2W-A8YY-01 4 39318616 39318616 C T RFC1 Silent p.K374K 0.36 TCGA-2W-A8YY-01 4 39322278 39322278 G A RFC1 Nonsense_Mutation p.Q274* 0.30 TCGA-2W-A8YY-01 4 39409074 39409074 G A KLB Missense_Mutation p.A169T 0.36 tolerated(0.56) benign(0.009) TCGA-2W-A8YY-01 4 3943985 3943985 G A FAM86EP RNA 0.40 TCGA-2W-A8YY-01 4 39466942 39466942 C T LIAS Silent p.T196T 0.44 TCGA-2W-A8YY-01 4 39507337 39507337 C A UGDH Missense_Mutation p.R313M 0.17 deleterious(0) possibly_damaging(0.898) TCGA-2W-A8YY-01 4 39826931 39826931 G T PDS5A 3'UTR 0.33 TCGA-2W-A8YY-01 4 39900087 39900087 G A PDS5A Silent p.G564G 0.26 TCGA-2W-A8YY-01 4 39915258 39915258 C T PDS5A Missense_Mutation p.R322H 0.24 tolerated(0.06) possibly_damaging(0.585) TCGA-2W-A8YY-01 4 40099030 40099030 G A N4BP2 Missense_Mutation p.V24I 0.34 deleterious(0.01) possibly_damaging(0.616) TCGA-2W-A8YY-01 4 40104233 40104233 C T N4BP2 Silent p.I256I 0.33 TCGA-2W-A8YY-01 4 40337517 40337517 C T CHRNA9 Silent p.C11C 0.36 TCGA-2W-A8YY-01 4 40351193 40351193 C T CHRNA9 Silent p.C220C 0.40 TCGA-2W-A8YY-01 4 40356392 40356392 C T CHRNA9 Missense_Mutation p.A432V 0.14 tolerated(0.08) probably_damaging(0.938) TCGA-2W-A8YY-01 4 40427378 40427378 G T RBM47 3'UTR 0.51 TCGA-2W-A8YY-01 4 40427399 40427399 G A RBM47 3'UTR 0.35 TCGA-2W-A8YY-01 4 40434876 40434876 G A RBM47 Missense_Mutation p.A445V 0.34 deleterious_low_confidence(0.05) benign(0.015) TCGA-2W-A8YY-01 4 40440545 40440545 G A RBM47 Silent p.H122H 0.44 TCGA-2W-A8YY-01 4 40792682 40792682 T C NSUN7 Missense_Mutation p.V367A 0.35 tolerated(0.92) benign(0.049) TCGA-2W-A8YY-01 4 40817803 40817803 G A APBB2 3'UTR 0.34 TCGA-2W-A8YY-01 4 40892401 40892401 G A APBB2 Silent p.G503G 0.43 TCGA-2W-A8YY-01 4 41628746 41628746 G T LIMCH1 Intron 0.41 TCGA-2W-A8YY-01 4 41648713 41648713 C T LIMCH1 Missense_Mutation p.R490W 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 41746533 41746533 A C PHOX2B 3'UTR 0.32 TCGA-2W-A8YY-01 4 41985019 41985019 G A DCAF4L1 3'UTR 0.25 TCGA-2W-A8YY-01 4 41985214 41985214 A - DCAF4L1 3'UTR 0.32 TCGA-2W-A8YY-01 4 41985683 41985683 G T DCAF4L1 3'UTR 0.40 TCGA-2W-A8YY-01 4 41986843 41986843 G T DCAF4L1 3'UTR 0.37 TCGA-2W-A8YY-01 4 4199034 4199034 A G OTOP1 Silent p.H509H 0.45 TCGA-2W-A8YY-01 4 4199211 4199211 C T OTOP1 Silent p.E450E 0.45 TCGA-2W-A8YY-01 4 420497 420497 G A ABCA11P RNA 0.37 TCGA-2W-A8YY-01 4 42065050 42065050 T C SLC30A9 Missense_Mutation p.V315A 0.43 deleterious(0) possibly_damaging(0.897) TCGA-2W-A8YY-01 4 42122107 42122107 G A BEND4 Missense_Mutation p.R451C 0.30 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-2W-A8YY-01 4 42403283 42403283 T C SHISA3 Missense_Mutation p.F178L 0.41 tolerated(0.16) benign(0.022) TCGA-2W-A8YY-01 4 42414791 42414791 A G ATP8A1 3'UTR 0.40 TCGA-2W-A8YY-01 4 4248041 4248041 T C TMEM128 Missense_Mutation p.K19E 0.29 tolerated(0.08) possibly_damaging(0.706) TCGA-2W-A8YY-01 4 4249906 4249906 C T TMEM128 5'UTR 0.50 TCGA-2W-A8YY-01 4 42509034 42509034 G A ATP8A1 Silent p.I695I 0.26 TCGA-2W-A8YY-01 4 42524273 42524273 G A ATP8A1 Silent p.S617S 0.13 TCGA-2W-A8YY-01 4 4303791 4303791 G A ZBTB49 Silent p.G76G 0.10 TCGA-2W-A8YY-01 4 4322408 4322408 C T ZBTB49 Missense_Mutation p.R555C 0.41 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 4 4322473 4322473 G A ZBTB49 Silent p.A576A 0.27 TCGA-2W-A8YY-01 4 4322746 4322746 G T ZBTB49 Missense_Mutation p.Q667H 0.31 tolerated(0.16) possibly_damaging(0.717) TCGA-2W-A8YY-01 4 436032 436032 C T ZNF721 Missense_Mutation p.E742K 0.35 tolerated(1) benign(0.016) TCGA-2W-A8YY-01 4 438216 438216 A G ZNF721 Missense_Mutation p.C14R 0.31 tolerated(0.11) benign(0) TCGA-2W-A8YY-01 4 44449743 44449743 C T KCTD8 Silent p.T266T 0.48 TCGA-2W-A8YY-01 4 44450030 44450030 G A KCTD8 Nonsense_Mutation p.Q171* 0.38 TCGA-2W-A8YY-01 4 44700741 44700741 C T GUF1 3'UTR 0.34 TCGA-2W-A8YY-01 4 44709630 44709630 T G GNPDA2 Intron 0.40 TCGA-2W-A8YY-01 4 44713131 44713131 C T GNPDA2 Missense_Mutation p.A145T 0.32 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-2W-A8YY-01 4 44724157 44724157 C T GNPDA2 Missense_Mutation p.R23H 0.39 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-2W-A8YY-01 4 46390764 46390764 T C GABRA2 Intron 0.41 TCGA-2W-A8YY-01 4 47514670 47514670 G A ATP10D Missense_Mutation p.R38H 0.28 tolerated(0.11) benign(0.223) TCGA-2W-A8YY-01 4 47537958 47537958 G A ATP10D Missense_Mutation p.R308Q 0.48 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 4 47625733 47625733 T C CORIN Missense_Mutation p.N799D 0.35 tolerated(0.07) benign(0.071) TCGA-2W-A8YY-01 4 47916115 47916115 C A NFXL1 Missense_Mutation p.G36W 0.36 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-2W-A8YY-01 4 48037731 48037731 A G NIPAL1 Missense_Mutation p.I259V 0.12 deleterious(0.03) possibly_damaging(0.765) TCGA-2W-A8YY-01 4 48139389 48139389 C A TEC 3'UTR 0.28 TCGA-2W-A8YY-01 4 48384904 48384904 C T SLAIN2 Silent p.G394G 0.21 TCGA-2W-A8YY-01 4 48564927 48564927 T G FRYL Missense_Mutation p.E1225D 0.34 tolerated(0.24) benign(0.155) TCGA-2W-A8YY-01 4 48584542 48584542 T C FRYL Missense_Mutation p.Q653R 0.14 tolerated(0.09) benign(0.017) TCGA-2W-A8YY-01 4 48604106 48604106 A G FRYL Silent p.C322C 0.35 TCGA-2W-A8YY-01 4 5016889 5016889 G A CYTL1 Missense_Mutation p.R134C 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.701) TCGA-2W-A8YY-01 4 5141658 5141658 C T STK32B Missense_Mutation p.R27W 0.27 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 4 515606 515606 C T PIGG Missense_Mutation p.S497L 0.08 tolerated(0.3) benign(0.005) TCGA-2W-A8YY-01 4 517481 517481 C T PIGG Silent p.D616D 0.41 TCGA-2W-A8YY-01 4 52861610 52861610 G A LRRC66 Silent p.D526D 0.33 TCGA-2W-A8YY-01 4 52862245 52862245 T G LRRC66 Missense_Mutation p.S315R 0.32 tolerated(0.11) benign(0.133) TCGA-2W-A8YY-01 4 52894996 52894996 C A SGCB Missense_Mutation p.R174M 0.33 deleterious(0.01) possibly_damaging(0.677) TCGA-2W-A8YY-01 4 53461188 53461188 A T USP46 3'UTR 0.32 TCGA-2W-A8YY-01 4 53461253 53461253 A G USP46 3'UTR 0.44 TCGA-2W-A8YY-01 4 53492205 53492205 G A USP46 Nonsense_Mutation p.R181* 0.08 TCGA-2W-A8YY-01 4 53611165 53611165 T C ERVMER34-1 Missense_Mutation p.T175A 0.32 tolerated_low_confidence(0.19) benign(0.388) TCGA-2W-A8YY-01 4 54250030 54250030 G T FIP1L1 Missense_Mutation p.A107S 0.45 tolerated(0.1) benign(0.22) TCGA-2W-A8YY-01 4 54257599 54257599 C T FIP1L1 Silent p.A213A 0.43 TCGA-2W-A8YY-01 4 54967984 54967984 G T GSX2 Silent p.A270A 0.21 TCGA-2W-A8YY-01 4 5500835 5500835 G T STK32B 3'UTR 0.11 TCGA-2W-A8YY-01 4 55156521 55156521 T G PDGFRA Missense_Mutation p.H974Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 4 55161380 55161380 G A PDGFRA Missense_Mutation p.D1071N 0.25 tolerated_low_confidence(0.13) benign(0.382) TCGA-2W-A8YY-01 4 55161771 55161771 G A PDGFRA 3'UTR 0.11 TCGA-2W-A8YY-01 4 55599275 55599275 A G KIT Missense_Mutation p.T801A 0.35 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 4 55968592 55968592 A G KDR Missense_Mutation p.S691P 0.29 tolerated(0.17) possibly_damaging(0.723) TCGA-2W-A8YY-01 4 56212650 56212650 G A SRD5A3 Silent p.L49L 0.41 TCGA-2W-A8YY-01 4 56300327 56300327 G A CLOCK 3'UTR 0.29 TCGA-2W-A8YY-01 4 56304455 56304455 A C CLOCK Missense_Mutation p.F785L 0.31 tolerated(0.08) benign(0.446) TCGA-2W-A8YY-01 4 56458328 56458328 C T PDCL2 5'UTR 0.11 TCGA-2W-A8YY-01 4 56734596 56734596 T C EXOC1 Silent p.D170D 0.45 TCGA-2W-A8YY-01 4 56830522 56830522 C T CEP135 Missense_Mutation p.S261F 0.39 deleterious(0) possibly_damaging(0.724) TCGA-2W-A8YY-01 4 57190355 57190355 G T KIAA1211 Missense_Mutation p.R1155M 0.52 deleterious(0) possibly_damaging(0.702) TCGA-2W-A8YY-01 4 57215604 57215604 C T AASDH Silent p.P771P 0.36 TCGA-2W-A8YY-01 4 57217623 57217623 C T AASDH Missense_Mutation p.G526D 0.21 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 4 57261623 57261623 G A PPAT Silent p.H483H 0.39 TCGA-2W-A8YY-01 4 57266969 57266969 G T PPAT Missense_Mutation p.A332D 0.23 deleterious(0) probably_damaging(0.981) TCGA-2W-A8YY-01 4 57366764 57366764 C T SRP72 Nonsense_Mutation p.R581* 0.38 TCGA-2W-A8YY-01 4 57777463 57777463 G A REST Missense_Mutation p.R220H 0.49 tolerated(0.05) possibly_damaging(0.745) TCGA-2W-A8YY-01 4 57796321 57796321 C T REST Nonsense_Mutation p.R433* 0.47 TCGA-2W-A8YY-01 4 57829539 57829539 C T NOA1 3'UTR 0.45 TCGA-2W-A8YY-01 4 57829644 57829644 C A NOA1 Missense_Mutation p.R690M 0.43 tolerated(0.05) benign(0.208) TCGA-2W-A8YY-01 4 57883268 57883268 C T POLR2B Missense_Mutation p.T672I 0.33 tolerated(0.05) probably_damaging(0.976) TCGA-2W-A8YY-01 4 57887148 57887148 C T POLR2B Missense_Mutation p.R803C 0.51 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 57898593 57898593 T - IGFBP7 Frame_Shift_Del p.G277Vfs*13 0.34 TCGA-2W-A8YY-01 4 5798789 5798789 C T EVC Missense_Mutation p.R643C 0.26 tolerated(0.25) benign(0.006) TCGA-2W-A8YY-01 4 5803747 5803747 C T EVC Missense_Mutation p.A792V 0.74 tolerated(0.26) benign(0.01) TCGA-2W-A8YY-01 4 6037742 6037742 C A JAKMIP1 Missense_Mutation p.E756D 0.44 tolerated(0.31) benign(0.332) TCGA-2W-A8YY-01 4 6052355 6052355 C T JAKMIP1 Missense_Mutation p.E620K 0.36 deleterious(0.02) possibly_damaging(0.729) TCGA-2W-A8YY-01 4 6064157 6064157 C T JAKMIP1 Missense_Mutation p.R481Q 0.30 deleterious(0.02) possibly_damaging(0.546) TCGA-2W-A8YY-01 4 62598641 62598641 G A LPHN3 Silent p.K188K 0.16 TCGA-2W-A8YY-01 4 62598985 62598985 C T LPHN3 Missense_Mutation p.T303I 0.56 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 62758574 62758574 G T LPHN3 Missense_Mutation p.A493S 0.14 tolerated(0.5) benign(0.001) TCGA-2W-A8YY-01 4 62812725 62812725 C T LPHN3 Missense_Mutation p.S770F 0.43 tolerated(0.07) benign(0.058) TCGA-2W-A8YY-01 4 6290744 6290744 G A WFS1 Missense_Mutation p.D116N 0.33 deleterious(0.04) benign(0.01) TCGA-2W-A8YY-01 4 62936532 62936532 G A LPHN3 Missense_Mutation p.G1439D 0.31 tolerated_low_confidence(0.06) probably_damaging(1) TCGA-2W-A8YY-01 4 62938005 62938005 T C LPHN3 3'UTR 0.31 TCGA-2W-A8YY-01 4 6302499 6302499 C T WFS1 Missense_Mutation p.A326V 0.41 tolerated(0.05) probably_damaging(0.972) TCGA-2W-A8YY-01 4 6304188 6304188 C T WFS1 Missense_Mutation p.A889V 0.38 tolerated(0.08) benign(0.058) TCGA-2W-A8YY-01 4 651212 651212 C T PDE6B Missense_Mutation p.R444C 0.37 deleterious(0) benign(0.028) TCGA-2W-A8YY-01 4 65175565 65175565 T C TECRL Silent p.T212T 0.45 TCGA-2W-A8YY-01 4 65274939 65274939 C T TECRL Missense_Mutation p.G44D 0.29 deleterious(0.01) probably_damaging(0.965) TCGA-2W-A8YY-01 4 656934 656934 G A PDE6B Silent p.E626E 0.39 TCGA-2W-A8YY-01 4 658687 658687 C T PDE6B Missense_Mutation p.A716V 0.35 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 4 6613001 6613001 C T MAN2B2 Silent p.L853L 0.32 TCGA-2W-A8YY-01 4 66201735 66201735 G A EPHA5 Missense_Mutation p.P923S 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 4 6622980 6622980 C T MAN2B2 Missense_Mutation p.R1000W 0.09 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 4 6643965 6643965 C T MRFAP1 3'UTR 0.10 TCGA-2W-A8YY-01 4 675669 675669 C - MFSD7 3'UTR 0.38 TCGA-2W-A8YY-01 4 679652 679652 A G MFSD7 Missense_Mutation p.V186A 0.39 tolerated(0.12) benign(0.263) TCGA-2W-A8YY-01 4 68379882 68379882 C T CENPC Missense_Mutation p.D452N 0.33 tolerated(0.09) benign(0) TCGA-2W-A8YY-01 4 68383889 68383889 C T CENPC Missense_Mutation p.R272Q 0.29 deleterious(0.01) possibly_damaging(0.449) TCGA-2W-A8YY-01 4 68484449 68484449 G A UBA6 3'UTR 0.12 TCGA-2W-A8YY-01 4 68536192 68536192 G A UBA6 Missense_Mutation p.T222M 0.39 deleterious(0) possibly_damaging(0.775) TCGA-2W-A8YY-01 4 6864755 6864755 G T KIAA0232 Missense_Mutation p.E882D 0.18 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 4 6884936 6884936 C T KIAA0232 3'UTR 0.11 TCGA-2W-A8YY-01 4 69048138 69048138 C T FTLP10 RNA 0.33 TCGA-2W-A8YY-01 4 69097020 69097020 C T TMPRSS11B Nonsense_Mutation p.W196* 0.09 TCGA-2W-A8YY-01 4 69203094 69203094 T C YTHDC1 Silent p.E178E 0.12 TCGA-2W-A8YY-01 4 69203469 69203469 C T YTHDC1 Missense_Mutation p.E94K 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-2W-A8YY-01 4 69215773 69215773 C T YTHDC1 5'UTR 0.34 TCGA-2W-A8YY-01 4 69528857 69528857 C T UGT2B15 Missense_Mutation p.E292K 0.10 deleterious(0.01) benign(0.292) TCGA-2W-A8YY-01 4 69535816 69535816 C T UGT2B15 Missense_Mutation p.R174Q 0.25 deleterious(0.01) benign(0.298) TCGA-2W-A8YY-01 4 69681747 69681747 A C UGT2B10 Missense_Mutation p.K4Q 0.47 deleterious(0.04) benign(0.117) TCGA-2W-A8YY-01 4 69696412 69696412 C T UGT2B10 Missense_Mutation p.R468C 0.41 deleterious(0.02) benign(0.126) TCGA-2W-A8YY-01 4 6996030 6996030 G A TBC1D14 Splice_Site p.X321_splice 0.60 TCGA-2W-A8YY-01 4 70066211 70066211 G T UGT2B11 Missense_Mutation p.L513M 0.33 deleterious(0.04) possibly_damaging(0.633) TCGA-2W-A8YY-01 4 7032166 7032166 G A TBC1D14 3'UTR 0.28 TCGA-2W-A8YY-01 4 70723268 70723268 G A SULT1E1 Missense_Mutation p.A32V 0.30 tolerated(0.11) benign(0.063) TCGA-2W-A8YY-01 4 70723328 70723328 T G SULT1E1 Missense_Mutation p.E12A 0.51 tolerated(0.73) benign(0) TCGA-2W-A8YY-01 4 71200751 71200751 C T CABS1 5'UTR 0.56 TCGA-2W-A8YY-01 4 71388497 71388497 C A AMTN Missense_Mutation p.P27H 0.50 deleterious(0) possibly_damaging(0.799) TCGA-2W-A8YY-01 4 71509482 71509482 C T ENAM Missense_Mutation p.P780L 0.33 deleterious(0.01) benign(0.111) TCGA-2W-A8YY-01 4 71510314 71510314 C A ENAM Nonsense_Mutation p.C1057* 0.32 TCGA-2W-A8YY-01 4 71588331 71588331 C T RUFY3 Missense_Mutation p.T14I 0.09 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 4 71640888 71640888 C T RUFY3 Silent p.D254D 0.44 TCGA-2W-A8YY-01 4 71654546 71654546 G A RUFY3 Missense_Mutation p.M365I 0.12 tolerated(0.18) benign(0.001) TCGA-2W-A8YY-01 4 71691018 71691018 T C GRSF1 Missense_Mutation p.H463R 0.32 tolerated(0.13) benign(0.091) TCGA-2W-A8YY-01 4 71701911 71701911 A G GRSF1 Missense_Mutation p.S160P 0.40 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 4 71849855 71849855 T - MOB1B 3'Flank 0.42 TCGA-2W-A8YY-01 4 71853778 71853778 A G MOB1B 3'UTR 0.31 TCGA-2W-A8YY-01 4 71892391 71892391 C T DCK Silent p.F225F 0.27 TCGA-2W-A8YY-01 4 72319251 72319251 G A SLC4A4 Silent p.A454A 0.34 TCGA-2W-A8YY-01 4 72434499 72434499 A G SLC4A4 3'UTR 0.47 TCGA-2W-A8YY-01 4 727759 727759 C A PCGF3 Intron 0.26 TCGA-2W-A8YY-01 4 73148884 73148884 C T ADAMTS3 Missense_Mutation p.R1196H 0.30 tolerated_low_confidence(0.45) benign(0) TCGA-2W-A8YY-01 4 73179424 73179424 C T ADAMTS3 Missense_Mutation p.R572H 0.40 deleterious(0.05) probably_damaging(0.921) TCGA-2W-A8YY-01 4 73933818 73933818 G A COX18 Missense_Mutation p.T121I 0.38 tolerated(0.14) benign(0) TCGA-2W-A8YY-01 4 73940667 73940667 T C ANKRD17 3'UTR 0.38 TCGA-2W-A8YY-01 4 73944424 73944424 C A ANKRD17 Missense_Mutation p.S2448I 0.51 benign(0.037) TCGA-2W-A8YY-01 4 74005281 74005281 T C ANKRD17 Missense_Mutation p.T1018A 0.32 possibly_damaging(0.803) TCGA-2W-A8YY-01 4 74043196 74043196 C A ANKRD17 Missense_Mutation p.A150S 0.27 benign(0.441) TCGA-2W-A8YY-01 4 74442373 74442373 C T RASSF6 Missense_Mutation p.R298H 0.54 deleterious(0) probably_damaging(0.954) TCGA-2W-A8YY-01 4 74447938 74447938 C A RASSF6 Nonsense_Mutation p.E245* 0.46 TCGA-2W-A8YY-01 4 74486045 74486045 C T RASSF6 Intron 0.65 TCGA-2W-A8YY-01 4 74735502 74735502 G A CXCL1 Missense_Mutation p.E73K 0.29 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 4 75023341 75023341 C A AC093677.1 Missense_Mutation p.A249S 0.33 unknown(0) TCGA-2W-A8YY-01 4 75091046 75091046 G T MTHFD2L Missense_Mutation p.R247I 0.29 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 4 75312425 75312425 C T AREG Missense_Mutation p.A79V 0.31 tolerated(0.37) benign(0.073) TCGA-2W-A8YY-01 4 75482180 75482180 C T AREGB Missense_Mutation p.A79V 0.35 tolerated(0.37) benign(0.073) TCGA-2W-A8YY-01 4 75974066 75974066 G T PARM1 3'UTR 0.30 TCGA-2W-A8YY-01 4 759890 759890 G A PCGF3 3'UTR 0.45 TCGA-2W-A8YY-01 4 763087 763087 C T PCGF3 3'UTR 0.42 TCGA-2W-A8YY-01 4 76555361 76555361 C T CDKL2 5'UTR 0.32 TCGA-2W-A8YY-01 4 76569164 76569164 C T G3BP2 3'UTR 0.13 TCGA-2W-A8YY-01 4 76573868 76573868 G A G3BP2 Nonsense_Mutation p.R295* 0.42 TCGA-2W-A8YY-01 4 76582860 76582860 G A G3BP2 Missense_Mutation p.R78C 0.43 tolerated(0.08) benign(0.013) TCGA-2W-A8YY-01 4 76711809 76711809 G A USO1 Missense_Mutation p.V369I 0.25 tolerated(0.13) possibly_damaging(0.45) TCGA-2W-A8YY-01 4 7677870 7677870 C T SORCS2 Missense_Mutation p.P419S 0.35 tolerated(0.73) benign(0.014) TCGA-2W-A8YY-01 4 76797488 76797488 G T PPEF2 Missense_Mutation p.D424E 0.43 tolerated(0.52) benign(0.015) TCGA-2W-A8YY-01 4 76896949 76896949 C T SDAD1 Missense_Mutation p.A176T 0.09 tolerated(0.08) benign(0.057) TCGA-2W-A8YY-01 4 76912111 76912111 C T SDAD1 5'UTR 0.54 TCGA-2W-A8YY-01 4 76927383 76927383 T C CXCL9 Missense_Mutation p.N37D 0.40 tolerated(0.07) possibly_damaging(0.484) TCGA-2W-A8YY-01 4 7705073 7705073 A G SORCS2 Missense_Mutation p.T579A 0.38 tolerated(0.09) probably_damaging(0.998) TCGA-2W-A8YY-01 4 77100813 77100813 C T SCARB2 Missense_Mutation p.E157K 0.26 tolerated(0.36) benign(0.009) TCGA-2W-A8YY-01 4 77255181 77255181 C T CCDC158 Missense_Mutation p.G935E 0.52 tolerated(0.35) possibly_damaging(0.839) TCGA-2W-A8YY-01 4 77288542 77288542 C T CCDC158 Missense_Mutation p.G579S 0.32 tolerated(0.2) probably_damaging(0.997) TCGA-2W-A8YY-01 4 77661622 77661622 G A SHROOM3 Missense_Mutation p.A766T 0.41 tolerated(0.81) benign(0) TCGA-2W-A8YY-01 4 77662930 77662930 G A SHROOM3 Missense_Mutation p.G1202R 0.31 tolerated(0.64) benign(0.026) TCGA-2W-A8YY-01 4 77675759 77675759 C T SHROOM3 Nonsense_Mutation p.R1375* 0.23 TCGA-2W-A8YY-01 4 7774556 7774556 C T AFAP1 Silent p.S748S 0.48 TCGA-2W-A8YY-01 4 77817393 77817393 G A SOWAHB Missense_Mutation p.T537M 0.35 deleterious(0.05) possibly_damaging(0.791) TCGA-2W-A8YY-01 4 77955764 77955764 T - SEPT11 3'UTR 0.31 TCGA-2W-A8YY-01 4 7802353 7802353 C T AFAP1 Missense_Mutation p.R361H 0.39 tolerated(0.51) probably_damaging(0.97) TCGA-2W-A8YY-01 4 7845040 7845040 C T AFAP1 Silent p.S124S 0.40 TCGA-2W-A8YY-01 4 78636165 78636165 G T CNOT6L 3'UTR 0.36 TCGA-2W-A8YY-01 4 78637098 78637098 G A CNOT6L 3'UTR 0.28 TCGA-2W-A8YY-01 4 78638123 78638123 C T CNOT6L 3'UTR 0.37 TCGA-2W-A8YY-01 4 78638923 78638923 T C CNOT6L 3'UTR 0.41 TCGA-2W-A8YY-01 4 78639373 78639373 G A CNOT6L 3'UTR 0.38 TCGA-2W-A8YY-01 4 78640640 78640640 C T CNOT6L 3'UTR 0.47 TCGA-2W-A8YY-01 4 78665889 78665889 C A CNOT6L Missense_Mutation p.D234Y 0.48 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 4 78695709 78695709 C T CNOT6L Missense_Mutation p.E97K 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 78697473 78697473 C T CNOT6L Missense_Mutation p.E27K 0.38 tolerated(0.11) possibly_damaging(0.69) TCGA-2W-A8YY-01 4 78979194 78979194 G A FRAS1 Missense_Mutation p.A11T 0.39 benign(0.318) TCGA-2W-A8YY-01 4 79308845 79308845 C T FRAS1 Missense_Mutation p.T1322I 0.18 benign(0.001) TCGA-2W-A8YY-01 4 7967062 7967062 C T ABLIM2 3'Flank 0.30 TCGA-2W-A8YY-01 4 7968724 7968724 A - ABLIM2 Frame_Shift_Del p.L644Cfs*64 0.37 TCGA-2W-A8YY-01 4 79832301 79832301 G A BMP2K Missense_Mutation p.R867H 0.67 tolerated_low_confidence(0.47) unknown(0) TCGA-2W-A8YY-01 4 79845094 79845094 G A PAQR3 Missense_Mutation p.A237V 0.34 tolerated(0.66) benign(0.004) TCGA-2W-A8YY-01 4 80328710 80328710 C A GK2 Missense_Mutation p.W215C 0.19 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 81504259 81504259 T C C4orf22 Silent p.S85S 0.17 TCGA-2W-A8YY-01 4 81978077 81978077 C A BMP3 3'UTR 0.62 TCGA-2W-A8YY-01 4 82126025 82126025 C T PRKG2 Silent p.S59S 0.50 TCGA-2W-A8YY-01 4 82369354 82369354 C A RASGEF1B Missense_Mutation p.A175S 0.17 tolerated(0.62) benign(0.004) TCGA-2W-A8YY-01 4 82369379 82369379 C T RASGEF1B Silent p.A166A 0.13 TCGA-2W-A8YY-01 4 8288478 8288478 T G HTRA3 Missense_Mutation p.S226A 0.50 tolerated(1) benign(0.026) TCGA-2W-A8YY-01 4 8293255 8293255 C T HTRA3 Silent p.S289S 0.30 TCGA-2W-A8YY-01 4 83279893 83279893 C T HNRNPD Silent p.P180P 0.18 TCGA-2W-A8YY-01 4 83347784 83347784 G A HNRNPDL Nonsense_Mutation p.Q342* 0.45 TCGA-2W-A8YY-01 4 83417265 83417265 G T TMEM150C Missense_Mutation p.L107M 0.39 tolerated(0.22) probably_damaging(0.959) TCGA-2W-A8YY-01 4 83423889 83423889 C T TMEM150C Missense_Mutation p.A76T 0.13 deleterious(0.02) possibly_damaging(0.474) TCGA-2W-A8YY-01 4 83557948 83557948 A C SCD5 Missense_Mutation p.C200G 0.30 deleterious(0) benign(0.203) TCGA-2W-A8YY-01 4 83839218 83839218 T C THAP9 Missense_Mutation p.M618T 0.48 tolerated(0.39) benign(0.001) TCGA-2W-A8YY-01 4 858922 858922 G A GAK Missense_Mutation p.P1052S 0.30 tolerated(0.43) benign(0.015) TCGA-2W-A8YY-01 4 860815 860815 G A GAK Missense_Mutation p.P934L 0.36 tolerated(0.19) benign(0.018) TCGA-2W-A8YY-01 4 8620238 8620238 G A CPZ Missense_Mutation p.R529H 0.55 tolerated(0.05) probably_damaging(0.981) TCGA-2W-A8YY-01 4 86667 86667 A G Z95704.2 RNA 0.44 TCGA-2W-A8YY-01 4 86863412 86863412 G A ARHGAP24 Silent p.K195K 0.57 TCGA-2W-A8YY-01 4 86916259 86916259 G A ARHGAP24 Missense_Mutation p.M484I 0.17 tolerated(0.2) benign(0.016) TCGA-2W-A8YY-01 4 86916598 86916598 G A ARHGAP24 Silent p.P597P 0.54 TCGA-2W-A8YY-01 4 86921800 86921800 G A ARHGAP24 Silent p.Q724Q 0.21 TCGA-2W-A8YY-01 4 87275720 87275720 C A MAPK10 5'UTR 0.65 TCGA-2W-A8YY-01 4 87275798 87275798 C T MAPK10 Splice_Site 0.58 TCGA-2W-A8YY-01 4 87689031 87689031 C T PTPN13 Missense_Mutation p.T1469I 0.21 deleterious(0) possibly_damaging(0.462) TCGA-2W-A8YY-01 4 87809409 87809409 C T C4orf36 Missense_Mutation p.A29T 0.55 deleterious(0.01) possibly_damaging(0.908) TCGA-2W-A8YY-01 4 87968411 87968411 A G AFF1 Missense_Mutation p.N242D 0.28 tolerated(0.38) possibly_damaging(0.841) TCGA-2W-A8YY-01 4 88011174 88011174 A G AFF1 Missense_Mutation p.I381M 0.26 deleterious(0) probably_damaging(0.981) TCGA-2W-A8YY-01 4 88036038 88036038 G A AFF1 Missense_Mutation p.A685T 0.64 tolerated(0.1) unknown(0) TCGA-2W-A8YY-01 4 88052983 88052983 C T AFF1 Missense_Mutation p.A1047V 0.64 tolerated(0.28) unknown(0) TCGA-2W-A8YY-01 4 88053513 88053513 C T AFF1 Silent p.F1088F 0.11 TCGA-2W-A8YY-01 4 88055693 88055693 G C AFF1 Missense_Mutation p.A1128P 0.66 tolerated(0.1) unknown(0) TCGA-2W-A8YY-01 4 88415237 88415237 G A SPARCL1 Nonsense_Mutation p.Q239* 0.23 TCGA-2W-A8YY-01 4 88996027 88996027 C T PKD2 Silent p.A862A 0.13 TCGA-2W-A8YY-01 4 89186244 89186244 C T PPM1K Missense_Mutation p.G299E 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 89199661 89199661 G A PPM1K Silent p.S25S 0.73 TCGA-2W-A8YY-01 4 89425476 89425476 C T HERC5 Silent p.C892C 0.18 TCGA-2W-A8YY-01 4 89527181 89527181 G A HERC3 Silent p.E69E 0.24 TCGA-2W-A8YY-01 4 89617124 89617124 T C NAP1L5 3'UTR 0.48 TCGA-2W-A8YY-01 4 89941742 89941742 C T FAM13A Missense_Mutation p.G99E 0.58 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 4 90035136 90035136 C A TIGD2 Nonsense_Mutation p.Y337* 0.17 TCGA-2W-A8YY-01 4 90169677 90169677 G A GPRIN3 Missense_Mutation p.P529S 0.36 tolerated(0.39) possibly_damaging(0.726) TCGA-2W-A8YY-01 4 90647277 90647277 C T SNCA 3'UTR 0.11 TCGA-2W-A8YY-01 4 91229626 91229626 G A CCSER1 Missense_Mutation p.R64H 0.16 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 4 91234078 91234078 G A CCSER1 Silent p.S463S 0.28 TCGA-2W-A8YY-01 4 94138060 94138060 G T GRID2 Nonsense_Mutation p.E321* 0.12 TCGA-2W-A8YY-01 4 949666 949666 T C TMEM175 Missense_Mutation p.I277T 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 95197521 95197521 C T SMARCAD1 Missense_Mutation p.R614C 0.61 deleterious(0) possibly_damaging(0.896) TCGA-2W-A8YY-01 4 952129 952129 G A TMEM175 Missense_Mutation p.A454T 0.38 tolerated(0.14) benign(0.01) TCGA-2W-A8YY-01 4 95496905 95496905 C T PDLIM5 Intron 0.12 TCGA-2W-A8YY-01 4 95578619 95578619 T C PDLIM5 Silent p.C531C 0.52 TCGA-2W-A8YY-01 4 956652 956652 C T DGKQ Missense_Mutation p.G648D 0.53 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 4 96090481 96090481 G T UNC5C Missense_Mutation p.N900K 0.67 deleterious(0) benign(0.309) TCGA-2W-A8YY-01 4 96222865 96222865 G A UNC5C Missense_Mutation p.R128C 0.57 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 4 96761334 96761334 G A PDHA2 Silent p.R11R 0.36 TCGA-2W-A8YY-01 4 9783699 9783699 G A DRD5 Missense_Mutation p.A16T 0.45 tolerated_low_confidence(0.3) benign(0.011) TCGA-2W-A8YY-01 4 9784116 9784116 C T DRD5 Missense_Mutation p.R155C 0.11 deleterious(0.03) probably_damaging(0.937) TCGA-2W-A8YY-01 4 9785172 9785172 C A DRD5 3'UTR 0.52 TCGA-2W-A8YY-01 4 982879 982879 G A SLC26A1 Silent p.C616C 0.33 TCGA-2W-A8YY-01 4 983092 983092 C T SLC26A1 Silent p.P545P 0.28 TCGA-2W-A8YY-01 4 98633896 98633896 C T STPG2 Missense_Mutation p.R425H 0.12 deleterious(0.01) possibly_damaging(0.749) TCGA-2W-A8YY-01 4 99808246 99808246 C T EIF4E Missense_Mutation p.R128H 0.13 tolerated(0.15) benign(0.03) TCGA-2W-A8YY-01 4 998160 998160 C A IDUA Silent p.P647P 0.36 TCGA-2W-A8YY-01 5 100147384 100147384 C T ST8SIA4 3'UTR 0.38 TCGA-2W-A8YY-01 5 100192095 100192095 T C ST8SIA4 Missense_Mutation p.N170S 0.48 probably_damaging(0.995) TCGA-2W-A8YY-01 5 100222266 100222266 A C ST8SIA4 Missense_Mutation p.V95G 0.38 benign(0.394) TCGA-2W-A8YY-01 5 101627063 101627063 C A SLCO4C1 Missense_Mutation p.L201F 0.46 tolerated(0.27) benign(0.012) TCGA-2W-A8YY-01 5 102249673 102249673 C T PAM Missense_Mutation p.H102Y 0.55 deleterious(0) possibly_damaging(0.874) TCGA-2W-A8YY-01 5 102360839 102360839 C T PAM Silent p.A830A 0.39 TCGA-2W-A8YY-01 5 102613454 102613454 T C C5orf30 3'UTR 0.37 TCGA-2W-A8YY-01 5 10261696 10261696 C T CCT5 Missense_Mutation p.R340W 0.41 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 5 10264961 10264961 C T CCT5 3'UTR 0.30 TCGA-2W-A8YY-01 5 1036419 1036419 G A NKD2 Missense_Mutation p.C236Y 0.46 deleterious(0.02) possibly_damaging(0.807) TCGA-2W-A8YY-01 5 1037785 1037785 T C NKD2 Intron 0.54 TCGA-2W-A8YY-01 5 1038057 1038057 G T NKD2 Missense_Mutation p.A309S 0.38 tolerated(0.14) benign(0.056) TCGA-2W-A8YY-01 5 10391770 10391770 G A MARCH6 Silent p.E231E 0.10 TCGA-2W-A8YY-01 5 10400904 10400904 C T MARCH6 Missense_Mutation p.P308S 0.31 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 5 10417500 10417500 T - MARCH6 Frame_Shift_Del p.Y758Ifs*19 0.34 TCGA-2W-A8YY-01 5 1074757 1074757 C T SLC12A7 Missense_Mutation p.R666H 0.43 deleterious(0) possibly_damaging(0.563) TCGA-2W-A8YY-01 5 10761209 10761209 G A DAP 5'UTR 0.54 TCGA-2W-A8YY-01 5 1076849 1076849 G A SLC12A7 Missense_Mutation p.L570F 0.56 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 5 1081834 1081834 G A SLC12A7 Silent p.H385H 0.41 TCGA-2W-A8YY-01 5 1087089 1087089 C T SLC12A7 Missense_Mutation p.G202S 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 108714054 108714054 T C PJA2 Silent p.P378P 0.36 TCGA-2W-A8YY-01 5 1089234 1089234 T C SLC12A7 Missense_Mutation p.M118V 0.46 deleterious(0.01) benign(0.023) TCGA-2W-A8YY-01 5 109153008 109153008 C T MAN2A1 Nonsense_Mutation p.R660* 0.53 TCGA-2W-A8YY-01 5 110002982 110002982 C T TMEM232 Silent p.E24E 0.38 TCGA-2W-A8YY-01 5 110440488 110440488 A G WDR36 Silent p.G389G 0.42 TCGA-2W-A8YY-01 5 110814186 110814186 C T CAMK4 Missense_Mutation p.S270F 0.13 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 5 111066258 111066258 T C NREP 3'UTR 0.40 TCGA-2W-A8YY-01 5 11111096 11111096 C T CTNND2 Silent p.T779T 0.33 TCGA-2W-A8YY-01 5 11117650 11117650 C T CTNND2 Missense_Mutation p.R730H 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 111755717 111755717 C A EPB41L4A-AS2 Silent p.G141G 0.27 TCGA-2W-A8YY-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.25 TCGA-2W-A8YY-01 5 112173289 112173289 A G APC Silent p.L666L 0.38 TCGA-2W-A8YY-01 5 112174944 112174944 C T APC Missense_Mutation p.T1218M 0.42 benign(0.19) TCGA-2W-A8YY-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.39 TCGA-2W-A8YY-01 5 112176277 112176277 C T APC Silent p.I1662I 0.38 TCGA-2W-A8YY-01 5 112178018 112178018 A G APC Missense_Mutation p.T2243A 0.38 probably_damaging(0.999) TCGA-2W-A8YY-01 5 112178606 112178606 C T APC Missense_Mutation p.R2439C 0.41 probably_damaging(1) TCGA-2W-A8YY-01 5 112769937 112769937 C T TSSK1B Nonsense_Mutation p.W200* 0.36 TCGA-2W-A8YY-01 5 11397168 11397168 C T CTNND2 Missense_Mutation p.R196Q 0.39 tolerated(0.1) possibly_damaging(0.493) TCGA-2W-A8YY-01 5 114469589 114469589 C A TRIM36 Missense_Mutation p.R501I 0.38 deleterious(0.01) possibly_damaging(0.467) TCGA-2W-A8YY-01 5 114859468 114859468 C A FEM1C 3'UTR 0.32 TCGA-2W-A8YY-01 5 114878673 114878673 G A FEM1C Missense_Mutation p.A173V 0.24 deleterious(0) probably_damaging(0.922) TCGA-2W-A8YY-01 5 114914844 114914844 T A TMED7-TICAM2 3'UTR 0.11 TCGA-2W-A8YY-01 5 114951182 114951182 T C TMED7 3'UTR 0.44 TCGA-2W-A8YY-01 5 115141067 115141067 C T CDO1 3'UTR 0.43 TCGA-2W-A8YY-01 5 115298337 115298337 G A AQPEP Missense_Mutation p.G8D 0.46 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 5 115298721 115298721 G A AQPEP Missense_Mutation p.R136H 0.44 tolerated(0.05) benign(0.081) TCGA-2W-A8YY-01 5 115320288 115320288 T C AQPEP Missense_Mutation p.V287A 0.37 tolerated(0.71) benign(0.015) TCGA-2W-A8YY-01 5 115627272 115627272 A G COMMD10 Missense_Mutation p.K190R 0.33 deleterious(0.03) benign(0.151) TCGA-2W-A8YY-01 5 115822595 115822595 T C SEMA6A Missense_Mutation p.K271R 0.32 tolerated(0.38) probably_damaging(0.997) TCGA-2W-A8YY-01 5 115831164 115831164 T G SEMA6A Missense_Mutation p.D130A 0.12 deleterious(0.01) possibly_damaging(0.724) TCGA-2W-A8YY-01 5 115831954 115831954 T G SEMA6A Missense_Mutation p.K112T 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 11732331 11732331 G A CTNND2 Silent p.L31L 0.40 TCGA-2W-A8YY-01 5 118176453 118176453 T C DTWD2 3'UTR 0.50 TCGA-2W-A8YY-01 5 118484970 118484970 G A DMXL1 Missense_Mutation p.G1150S 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 118506682 118506682 G T DMXL1 Nonsense_Mutation p.E2066* 0.45 TCGA-2W-A8YY-01 5 118513110 118513110 C T DMXL1 Nonsense_Mutation p.R2273* 0.35 TCGA-2W-A8YY-01 5 118560421 118560421 T C DMXL1 Silent p.I2744I 0.14 TCGA-2W-A8YY-01 5 118728593 118728593 C T TNFAIP8 Silent p.I38I 0.43 TCGA-2W-A8YY-01 5 118792019 118792019 G A HSD17B4 Silent p.P26P 0.39 TCGA-2W-A8YY-01 5 118861676 118861676 G A HSD17B4 Silent p.Q571Q 0.45 TCGA-2W-A8YY-01 5 119800270 119800270 T G PRR16 5'UTR 0.47 TCGA-2W-A8YY-01 5 120022556 120022556 A G PRR16 3'UTR 0.58 TCGA-2W-A8YY-01 5 1201764 1201764 C T SLC6A19 5'UTR 0.39 TCGA-2W-A8YY-01 5 1208947 1208947 C T SLC6A19 Missense_Mutation p.R97W 0.29 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 5 121188335 121188335 C T FTMT Missense_Mutation p.A226V 0.30 deleterious(0.01) possibly_damaging(0.866) TCGA-2W-A8YY-01 5 1212546 1212546 G A SLC6A19 Missense_Mutation p.A204T 0.27 deleterious(0.02) benign(0.44) TCGA-2W-A8YY-01 5 121356072 121356072 T G SRFBP1 Silent p.V214V 0.33 TCGA-2W-A8YY-01 5 1213653 1213653 G A SLC6A19 Missense_Mutation p.A247T 0.39 deleterious(0) possibly_damaging(0.487) TCGA-2W-A8YY-01 5 121405793 121405793 C T LOX Missense_Mutation p.R401H 0.47 tolerated(0.66) benign(0.333) TCGA-2W-A8YY-01 5 121488202 121488202 C T ZNF474 Missense_Mutation p.R173C 0.30 deleterious(0.03) benign(0.011) TCGA-2W-A8YY-01 5 121488481 121488481 C T ZNF474 Missense_Mutation p.P266S 0.43 deleterious(0) possibly_damaging(0.743) TCGA-2W-A8YY-01 5 1216767 1216767 C T SLC6A19 Missense_Mutation p.R328C 0.43 deleterious(0) possibly_damaging(0.67) TCGA-2W-A8YY-01 5 121761052 121761052 C G SNCAIP Missense_Mutation p.H336Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 1219021 1219021 G A SLC6A19 Missense_Mutation p.V393M 0.33 deleterious(0) possibly_damaging(0.647) TCGA-2W-A8YY-01 5 122161761 122161761 G A SNX2 Missense_Mutation p.R410Q 0.33 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 5 122161787 122161787 G A SNX2 Missense_Mutation p.D419N 0.42 tolerated(0.19) probably_damaging(0.999) TCGA-2W-A8YY-01 5 122163093 122163093 A - SNX2 Frame_Shift_Del p.E461Kfs*23 0.17 TCGA-2W-A8YY-01 5 122364999 122364999 C T PPIC Splice_Site p.X77_splice 0.32 TCGA-2W-A8YY-01 5 122425176 122425176 G T PRDM6 5'UTR 0.43 TCGA-2W-A8YY-01 5 122708434 122708434 C T CEP120 Silent p.L797L 0.49 TCGA-2W-A8YY-01 5 123973209 123973209 G A ZNF608 3'UTR 0.28 TCGA-2W-A8YY-01 5 123973398 123973399 - TA ZNF608 3'UTR 0.37 TCGA-2W-A8YY-01 5 124080725 124080725 C A ZNF608 5'UTR 0.43 TCGA-2W-A8YY-01 5 125939410 125939410 G A PHAX Missense_Mutation p.R82H 0.38 deleterious(0.02) benign(0.067) TCGA-2W-A8YY-01 5 125939454 125939454 T G PHAX Missense_Mutation p.F97V 0.44 tolerated(0.17) benign(0.184) TCGA-2W-A8YY-01 5 126147538 126147538 G A LMNB1 Missense_Mutation p.S296N 0.57 deleterious(0.03) possibly_damaging(0.77) TCGA-2W-A8YY-01 5 126205850 126205850 G T MARCH3 3'UTR 0.30 TCGA-2W-A8YY-01 5 126214039 126214039 G A MARCH3 Silent p.G147G 0.34 TCGA-2W-A8YY-01 5 126250605 126250605 G A MARCH3 Intron 0.41 TCGA-2W-A8YY-01 5 126869383 126869383 G A PRRC1 Missense_Mutation p.A276T 0.19 tolerated(0.07) benign(0.429) TCGA-2W-A8YY-01 5 127466839 127466839 G A SLC12A2 Missense_Mutation p.A377T 0.41 deleterious(0.04) probably_damaging(0.997) TCGA-2W-A8YY-01 5 127477654 127477654 G A SLC12A2 Missense_Mutation p.G585D 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 127507408 127507408 G T SLC12A2 Missense_Mutation p.G925C 0.35 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 5 127518625 127518625 G T SLC12A2 Missense_Mutation p.K1097N 0.17 tolerated(0.35) benign(0.007) TCGA-2W-A8YY-01 5 127522812 127522812 C T SLC12A2 3'UTR 0.36 TCGA-2W-A8YY-01 5 127594651 127594651 A - FBN2 3'UTR 0.46 TCGA-2W-A8YY-01 5 127623107 127623107 G A FBN2 Missense_Mutation p.A2258V 0.42 tolerated(0.19) benign(0.285) TCGA-2W-A8YY-01 5 127648343 127648343 C T FBN2 Missense_Mutation p.C1621Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 1279568 1279568 C T TERT Silent p.S656S 0.30 TCGA-2W-A8YY-01 5 128302221 128302221 G A SLC27A6 Missense_Mutation p.V131M 0.27 tolerated(0.08) probably_damaging(0.963) TCGA-2W-A8YY-01 5 128365290 128365290 A G SLC27A6 Missense_Mutation p.M525V 0.21 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 5 129073708 129073708 T G ADAMTS19 3'UTR 0.44 TCGA-2W-A8YY-01 5 1293439 1293439 C T TERT Missense_Mutation p.R521H 0.44 tolerated(0.07) benign(0.11) TCGA-2W-A8YY-01 5 1294044 1294044 C T TERT Silent p.T319T 0.20 TCGA-2W-A8YY-01 5 130495237 130495237 C T HINT1 Missense_Mutation p.R95Q 0.34 tolerated(0.06) possibly_damaging(0.846) TCGA-2W-A8YY-01 5 130766693 130766693 T C RAPGEF6 Missense_Mutation p.T1450A 0.35 tolerated_low_confidence(0.61) benign(0.002) TCGA-2W-A8YY-01 5 130805499 130805499 A C RAPGEF6 Intron 0.42 TCGA-2W-A8YY-01 5 130825269 130825269 G T RAPGEF6 Missense_Mutation p.L604I 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 131347606 131347606 C A ACSL6 5'Flank 0.57 TCGA-2W-A8YY-01 5 131411489 131411489 C A CSF2 Missense_Mutation p.L127M 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 131533930 131533930 G A P4HA2 Missense_Mutation p.T447M 0.24 deleterious(0) possibly_damaging(0.883) TCGA-2W-A8YY-01 5 131630334 131630334 G A SLC22A4 Missense_Mutation p.A9T 0.30 deleterious(0.04) benign(0.003) TCGA-2W-A8YY-01 5 131818966 131818966 T C IRF1 3'UTR 0.08 TCGA-2W-A8YY-01 5 131879068 131879068 C T IL5 Missense_Mutation p.A35T 0.44 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 5 131927067 131927067 G A RAD50 Missense_Mutation p.R535H 0.38 tolerated(0.08) possibly_damaging(0.667) TCGA-2W-A8YY-01 5 132015441 132015441 G A IL4 Silent p.A73A 0.33 TCGA-2W-A8YY-01 5 132018324 132018324 T G IL4 3'UTR 0.45 TCGA-2W-A8YY-01 5 132029242 132029242 G A KIF3A 3'UTR 0.37 TCGA-2W-A8YY-01 5 132051556 132051556 C T KIF3A Missense_Mutation p.R341H 0.39 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 5 132097555 132097555 C T SEPT8 Missense_Mutation p.E244K 0.48 tolerated(0.08) possibly_damaging(0.544) TCGA-2W-A8YY-01 5 132100071 132100071 G T SEPT8 Silent p.L64L 0.26 TCGA-2W-A8YY-01 5 132211236 132211236 C T AFF4 3'UTR 0.14 TCGA-2W-A8YY-01 5 132222064 132222064 G A AFF4 Silent p.L1013L 0.38 TCGA-2W-A8YY-01 5 132232875 132232875 G A AFF4 Missense_Mutation p.P483S 0.36 tolerated(0.41) benign(0.027) TCGA-2W-A8YY-01 5 132424248 132424248 G A HSPA4 Splice_Site p.X379_splice 0.35 TCGA-2W-A8YY-01 5 132439642 132439642 A G HSPA4 Missense_Mutation p.K748R 0.36 tolerated(0.28) benign(0.045) TCGA-2W-A8YY-01 5 133481496 133481496 C A TCF7 Intron 0.31 TCGA-2W-A8YY-01 5 133483610 133483610 T C TCF7 3'UTR 0.36 TCGA-2W-A8YY-01 5 133533248 133533248 G A PPP2CA 3'UTR 0.45 TCGA-2W-A8YY-01 5 133533306 133533306 G T PPP2CA 3'UTR 0.11 TCGA-2W-A8YY-01 5 133533489 133533489 G A PPP2CA Missense_Mutation p.R302C 0.33 deleterious(0) possibly_damaging(0.806) TCGA-2W-A8YY-01 5 133635403 133635403 C T CDKL3 Intron 0.39 TCGA-2W-A8YY-01 5 133861607 133861607 G T JADE2 5'Flank 0.43 TCGA-2W-A8YY-01 5 133902109 133902109 G A JADE2 Missense_Mutation p.D425N 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-2W-A8YY-01 5 133914984 133914984 C T JADE2 Missense_Mutation p.R784C 0.46 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 5 134060865 134060865 C A SEC24A 3'UTR 0.33 TCGA-2W-A8YY-01 5 134060975 134060975 C A SEC24A 3'UTR 0.42 TCGA-2W-A8YY-01 5 134099776 134099776 G A DDX46 Missense_Mutation p.R67H 0.50 deleterious(0.02) unknown(0) TCGA-2W-A8YY-01 5 134192407 134192407 G A C5orf24 3'UTR 0.29 TCGA-2W-A8YY-01 5 134192660 134192660 G T C5orf24 3'UTR 0.23 TCGA-2W-A8YY-01 5 134364711 134364711 G A PITX1 Missense_Mutation p.P235S 0.35 tolerated(0.12) benign(0.165) TCGA-2W-A8YY-01 5 134364934 134364934 G A PITX1 Silent p.Y160Y 0.50 TCGA-2W-A8YY-01 5 134366976 134366976 G A PITX1 Missense_Mutation p.P131L 0.51 deleterious(0.03) possibly_damaging(0.541) TCGA-2W-A8YY-01 5 134696269 134696269 G A H2AFY Missense_Mutation p.A169V 0.23 deleterious(0.04) benign(0.023) TCGA-2W-A8YY-01 5 134724778 134724778 C T H2AFY Silent p.S2S 0.18 TCGA-2W-A8YY-01 5 134785400 134785400 G A TIFAB Missense_Mutation p.A77V 0.58 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 5 134870475 134870475 G A NEUROG1 3'UTR 0.40 TCGA-2W-A8YY-01 5 135276585 135276585 C T FBXL21 RNA 0.29 TCGA-2W-A8YY-01 5 135385184 135385184 G A TGFBI Silent p.T276T 0.44 TCGA-2W-A8YY-01 5 135391393 135391393 A G TGFBI Missense_Mutation p.I479V 0.10 tolerated(0.23) probably_damaging(0.986) TCGA-2W-A8YY-01 5 135398998 135398998 T G TGFBI 3'UTR 0.50 TCGA-2W-A8YY-01 5 135469796 135469796 C T SMAD5 Intron 0.32 TCGA-2W-A8YY-01 5 135583168 135583168 G A TRPC7 Missense_Mutation p.A612V 0.40 tolerated(0.1) possibly_damaging(0.74) TCGA-2W-A8YY-01 5 135692476 135692476 G A TRPC7 Silent p.C200C 0.21 TCGA-2W-A8YY-01 5 135693042 135693042 G A TRPC7 Missense_Mutation p.R12C 0.34 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-2W-A8YY-01 5 136311145 136311145 C T SPOCK1 3'UTR 0.38 TCGA-2W-A8YY-01 5 136312075 136312075 G T SPOCK1 3'UTR 0.19 TCGA-2W-A8YY-01 5 136312110 136312110 A G SPOCK1 3'UTR 0.21 TCGA-2W-A8YY-01 5 136403476 136403476 C T SPOCK1 Missense_Mutation p.A173T 0.19 tolerated(0.59) benign(0.001) TCGA-2W-A8YY-01 5 13716733 13716733 C T DNAH5 Missense_Mutation p.D4258N 0.38 possibly_damaging(0.831) TCGA-2W-A8YY-01 5 13721350 13721350 C T DNAH5 Missense_Mutation p.R4013H 0.28 possibly_damaging(0.812) TCGA-2W-A8YY-01 5 137244523 137244523 G T PKD2L2 Missense_Mutation p.D406Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 137274356 137274356 G T FAM13B 3'UTR 0.44 TCGA-2W-A8YY-01 5 137426752 137426752 G A WNT8A Missense_Mutation p.G349D 0.30 tolerated_low_confidence(0.18) benign(0.002) TCGA-2W-A8YY-01 5 137501698 137501698 G T BRD8 Missense_Mutation p.S366Y 0.38 deleterious(0.03) probably_damaging(0.993) TCGA-2W-A8YY-01 5 13753486 13753486 C T DNAH5 Nonsense_Mutation p.W3576* 0.27 TCGA-2W-A8YY-01 5 137548987 137548987 G T CDC23 Silent p.T5T 0.43 TCGA-2W-A8YY-01 5 137593465 137593465 T C GFRA3 Silent p.L216L 0.40 TCGA-2W-A8YY-01 5 137593536 137593536 G A GFRA3 Missense_Mutation p.R193C 0.38 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 5 137721710 137721710 G - KDM3B Splice_Site p.X262_splice 0.33 TCGA-2W-A8YY-01 5 137760003 137760003 C A KDM3B Silent p.I1404I 0.32 TCGA-2W-A8YY-01 5 137765649 137765649 C T KDM3B Nonsense_Mutation p.R1630* 0.23 TCGA-2W-A8YY-01 5 137771343 137771343 C T KDM3B Missense_Mutation p.A1747V 0.30 deleterious(0.03) possibly_damaging(0.617) TCGA-2W-A8YY-01 5 137843038 137843038 T G ETF1 3'UTR 0.12 TCGA-2W-A8YY-01 5 137843722 137843722 T C ETF1 3'UTR 0.20 TCGA-2W-A8YY-01 5 13786421 13786421 A G DNAH5 Missense_Mutation p.I2896T 0.41 benign(0.001) TCGA-2W-A8YY-01 5 137892159 137892159 G A HSPA9 Silent p.F648F 0.46 TCGA-2W-A8YY-01 5 13809249 13809249 C T DNAH5 Silent p.P2552P 0.44 TCGA-2W-A8YY-01 5 13817745 13817745 C A DNAH5 Missense_Mutation p.Q2300H 0.43 possibly_damaging(0.522) TCGA-2W-A8YY-01 5 138205558 138205558 C T LRRTM2 3'UTR 0.27 TCGA-2W-A8YY-01 5 138268318 138268318 G A CTNNA1 Missense_Mutation p.A784T 0.35 tolerated(0.41) benign(0.153) TCGA-2W-A8YY-01 5 138282717 138282717 C T SIL1 3'UTR 0.39 TCGA-2W-A8YY-01 5 13862706 13862706 C T DNAH5 Missense_Mutation p.A1583T 0.40 possibly_damaging(0.798) TCGA-2W-A8YY-01 5 138665127 138665127 C A MATR3 3'UTR 0.37 TCGA-2W-A8YY-01 5 138715386 138715386 C T SLC23A1 Nonsense_Mutation p.W306* 0.43 TCGA-2W-A8YY-01 5 138727970 138727970 G A PROB1 Missense_Mutation p.A934V 0.22 deleterious(0.02) possibly_damaging(0.892) TCGA-2W-A8YY-01 5 138860390 138860390 G A TMEM173 Missense_Mutation p.R169W 0.36 deleterious(0) probably_damaging(0.949) TCGA-2W-A8YY-01 5 13894765 13894765 T C DNAH5 Missense_Mutation p.K809E 0.34 benign(0.292) TCGA-2W-A8YY-01 5 139060294 139060294 C T CXXC5 Silent p.S62S 0.10 TCGA-2W-A8YY-01 5 13919462 13919462 C T DNAH5 Splice_Site p.X267_splice 0.34 TCGA-2W-A8YY-01 5 13922289 13922289 C T DNAH5 Missense_Mutation p.R196H 0.40 possibly_damaging(0.623) TCGA-2W-A8YY-01 5 139260465 139260465 G A NRG2 Missense_Mutation p.R323W 0.41 deleterious(0.01) probably_damaging(0.967) TCGA-2W-A8YY-01 5 139422163 139422163 C T NRG2 Silent p.L164L 0.41 TCGA-2W-A8YY-01 5 139422750 139422750 G A NRG2 5'UTR 0.26 TCGA-2W-A8YY-01 5 13944557 13944557 G C DNAH5 5'UTR 0.28 TCGA-2W-A8YY-01 5 139495472 139495472 C T PURA 3'UTR 0.35 TCGA-2W-A8YY-01 5 139507524 139507524 C A IGIP 5'UTR 0.22 TCGA-2W-A8YY-01 5 139838769 139838769 A G ANKHD1 Missense_Mutation p.T501A 0.15 unknown(0) TCGA-2W-A8YY-01 5 139905976 139905976 C T ANKHD1 Missense_Mutation p.L1630F 0.42 possibly_damaging(0.643) TCGA-2W-A8YY-01 5 139909017 139909017 G A ANKHD1 Silent p.T2162T 0.34 TCGA-2W-A8YY-01 5 139921842 139921842 C T ANKHD1 Missense_Mutation p.P2552L 0.37 possibly_damaging(0.726) TCGA-2W-A8YY-01 5 139928492 139928492 C T ANKHD1 Missense_Mutation p.H2561Y 0.16 benign(0.01) TCGA-2W-A8YY-01 5 139928656 139928656 T C EIF4EBP3 Missense_Mutation p.I90T 0.25 tolerated(0.68) benign(0.001) TCGA-2W-A8YY-01 5 139947773 139947773 C T SLC35A4 3'UTR 0.31 TCGA-2W-A8YY-01 5 140019383 140019383 G T TMCO6 Missense_Mutation p.A49S 0.39 tolerated(0.76) benign(0.005) TCGA-2W-A8YY-01 5 140024827 140024827 T C TMCO6 3'UTR 0.38 TCGA-2W-A8YY-01 5 140038918 140038918 G T IK Nonsense_Mutation p.G399* 0.45 TCGA-2W-A8YY-01 5 140044397 140044397 C - WDR55 5'UTR 0.32 TCGA-2W-A8YY-01 5 140166575 140166575 G A PCDHA1 Missense_Mutation p.D234N 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.62) TCGA-2W-A8YY-01 5 140166894 140166894 T C PCDHA1 Missense_Mutation p.V340A 0.43 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-2W-A8YY-01 5 140166982 140166982 C T PCDHA1 Silent p.I369I 0.19 TCGA-2W-A8YY-01 5 140167022 140167022 G A PCDHA1 Missense_Mutation p.G383R 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.866) TCGA-2W-A8YY-01 5 140167250 140167250 G A PCDHA1 Missense_Mutation p.E459K 0.08 deleterious_low_confidence(0.05) benign(0.272) TCGA-2W-A8YY-01 5 140175858 140175858 G A PCDHA2 Missense_Mutation p.A437T 0.34 tolerated_low_confidence(0.15) benign(0.414) TCGA-2W-A8YY-01 5 140176335 140176335 G A PCDHA2 Missense_Mutation p.A596T 0.29 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-2W-A8YY-01 5 140176744 140176744 G A PCDHA2 Missense_Mutation p.R732H 0.08 deleterious_low_confidence(0.02) benign(0.001) TCGA-2W-A8YY-01 5 140182078 140182078 G A PCDHA3 Silent p.S432S 0.23 TCGA-2W-A8YY-01 5 140182226 140182226 G A PCDHA3 Missense_Mutation p.A482T 0.40 deleterious_low_confidence(0.02) benign(0.396) TCGA-2W-A8YY-01 5 140182908 140182908 G T PCDHA3 Missense_Mutation p.S709I 0.45 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-2W-A8YY-01 5 140187693 140187693 T C PCDHA4 Silent p.Y307Y 0.40 TCGA-2W-A8YY-01 5 140202175 140202175 T C PCDHA5 Missense_Mutation p.I272T 0.50 tolerated_low_confidence(0.58) benign(0.013) TCGA-2W-A8YY-01 5 140203456 140203456 T C PCDHA5 Missense_Mutation p.L699P 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 140208991 140208991 G A PCDHA6 Missense_Mutation p.A439T 0.38 deleterious_low_confidence(0.05) possibly_damaging(0.645) TCGA-2W-A8YY-01 5 140209596 140209596 G T PCDHA6 Silent p.A640A 0.39 TCGA-2W-A8YY-01 5 140215200 140215200 G T PCDHA7 Missense_Mutation p.S411I 0.44 deleterious_low_confidence(0) benign(0.329) TCGA-2W-A8YY-01 5 140215905 140215905 G A PCDHA7 Missense_Mutation p.R646H 0.38 deleterious_low_confidence(0.04) benign(0.152) TCGA-2W-A8YY-01 5 140222835 140222835 G A PCDHA8 Silent p.P643P 0.54 TCGA-2W-A8YY-01 5 140223270 140223270 G T PCDHA8 Missense_Mutation p.E788D 0.29 tolerated_low_confidence(0.28) benign(0) TCGA-2W-A8YY-01 5 140229585 140229585 G A PCDHA9 Missense_Mutation p.R502H 0.43 deleterious_low_confidence(0) benign(0.117) TCGA-2W-A8YY-01 5 140229731 140229731 C G PCDHA9 Missense_Mutation p.L551V 0.36 tolerated_low_confidence(0.15) possibly_damaging(0.646) TCGA-2W-A8YY-01 5 140229877 140229877 C T PCDHA9 Silent p.A599A 0.24 TCGA-2W-A8YY-01 5 140229895 140229895 G A PCDHA9 Silent p.A605A 0.31 TCGA-2W-A8YY-01 5 140237013 140237013 G A PCDHA10 Silent p.T460T 0.34 TCGA-2W-A8YY-01 5 140237841 140237841 G A PCDHA10 Silent p.T736T 0.28 TCGA-2W-A8YY-01 5 140242614 140242614 G T AC005609.1 Missense_Mutation p.A121D 0.38 tolerated_low_confidence(0.77) possibly_damaging(0.82) TCGA-2W-A8YY-01 5 140248828 140248828 G A PCDHA11 Missense_Mutation p.R47H 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.643) TCGA-2W-A8YY-01 5 140250616 140250616 G A PCDHA11 Missense_Mutation p.R643H 0.08 deleterious_low_confidence(0.02) benign(0.24) TCGA-2W-A8YY-01 5 140250878 140250878 G A PCDHA11 Silent p.A730A 0.10 TCGA-2W-A8YY-01 5 140256986 140256986 G A PCDHA12 Silent p.P643P 0.27 TCGA-2W-A8YY-01 5 140257319 140257319 G A PCDHA12 Silent p.R754R 0.30 TCGA-2W-A8YY-01 5 140262037 140262037 C T PCDHA13 Missense_Mutation p.R62C 0.39 deleterious_low_confidence(0) possibly_damaging(0.63) TCGA-2W-A8YY-01 5 140262038 140262038 G A PCDHA13 Missense_Mutation p.R62H 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.805) TCGA-2W-A8YY-01 5 140262357 140262357 G A PCDHA13 Silent p.L168L 0.28 TCGA-2W-A8YY-01 5 140263902 140263902 G A PCDHA13 Silent p.S683S 0.35 TCGA-2W-A8YY-01 5 140348549 140348549 G A PCDHAC2 Missense_Mutation p.R733H 0.28 tolerated(0.19) benign(0) TCGA-2W-A8YY-01 5 140389283 140389283 G A PCDHAC1 Missense_Mutation p.G885R 0.48 deleterious(0) possibly_damaging(0.892) TCGA-2W-A8YY-01 5 140389358 140389358 A G PCDHAC1 Missense_Mutation p.I910V 0.30 deleterious(0.04) possibly_damaging(0.676) TCGA-2W-A8YY-01 5 140433092 140433092 G A PCDHB1 Silent p.K679K 0.33 TCGA-2W-A8YY-01 5 140474467 140474467 G T PCDHB2 Missense_Mutation p.Q31H 0.53 deleterious_low_confidence(0) benign(0.319) TCGA-2W-A8YY-01 5 140474644 140474644 G A PCDHB2 Silent p.E90E 0.13 TCGA-2W-A8YY-01 5 140480072 140480072 C T PCDHB3 5'Flank 0.46 TCGA-2W-A8YY-01 5 140501841 140501841 G T PCDHB4 Missense_Mutation p.E87D 0.42 deleterious_low_confidence(0.02) benign(0.158) TCGA-2W-A8YY-01 5 140503450 140503450 C T PCDHB4 Missense_Mutation p.R624C 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.528) TCGA-2W-A8YY-01 5 140503605 140503605 G A PCDHB4 Silent p.A675A 0.40 TCGA-2W-A8YY-01 5 140503627 140503627 G A PCDHB4 Missense_Mutation p.D683N 0.41 deleterious_low_confidence(0.04) benign(0.028) TCGA-2W-A8YY-01 5 140503733 140503733 C T PCDHB4 Missense_Mutation p.A718V 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.631) TCGA-2W-A8YY-01 5 140515572 140515572 G A PCDHB5 Missense_Mutation p.G186R 0.10 tolerated_low_confidence(0.16) benign(0.003) TCGA-2W-A8YY-01 5 140516717 140516717 C A PCDHB5 Silent p.G567G 0.41 TCGA-2W-A8YY-01 5 140517607 140517607 C A PCDHB5 3'UTR 0.32 TCGA-2W-A8YY-01 5 140530625 140530625 G A PCDHB6 Missense_Mutation p.V263I 0.49 tolerated(0.05) benign(0.304) TCGA-2W-A8YY-01 5 140530672 140530672 C T PCDHB6 Silent p.Y278Y 0.28 TCGA-2W-A8YY-01 5 140530780 140530780 C T PCDHB6 Silent p.D314D 0.36 TCGA-2W-A8YY-01 5 140530825 140530825 C A PCDHB6 Nonsense_Mutation p.C329* 0.39 TCGA-2W-A8YY-01 5 140535769 140535769 G A PCDHB17 Missense_Mutation p.A65T 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.756) TCGA-2W-A8YY-01 5 140535773 140535773 G A PCDHB17 Missense_Mutation p.R66Q 0.45 tolerated_low_confidence(0.22) benign(0.106) TCGA-2W-A8YY-01 5 140537169 140537169 C T PCDHB17 Silent p.R531R 0.31 TCGA-2W-A8YY-01 5 140553131 140553131 G A PCDHB7 Missense_Mutation p.A239T 0.49 deleterious_low_confidence(0.03) benign(0.02) TCGA-2W-A8YY-01 5 140554225 140554225 G A PCDHB7 Silent p.S603S 0.15 TCGA-2W-A8YY-01 5 140554314 140554314 G A PCDHB7 Missense_Mutation p.R633H 0.19 deleterious_low_confidence(0) possibly_damaging(0.782) TCGA-2W-A8YY-01 5 140558149 140594229 5:140558149-140594229 - PCDHB12 large deletion 0.16 TCGA-2W-A8YY-01 5 140558271 140558271 G A PCDHB8 Missense_Mutation p.G219D 0.27 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-2W-A8YY-01 5 140559060 140559060 G A PCDHB8 Missense_Mutation p.G482D 0.15 deleterious_low_confidence(0) benign(0.38) TCGA-2W-A8YY-01 5 140559517 140559517 C T PCDHB8 Silent p.R634R 0.31 TCGA-2W-A8YY-01 5 140562317 140562317 C T PCDHB16 Silent p.T61T 0.40 TCGA-2W-A8YY-01 5 140563788 140563788 C A PCDHB16 Missense_Mutation p.L552M 0.64 deleterious_low_confidence(0.03) benign(0.297) TCGA-2W-A8YY-01 5 140563856 140563856 G A PCDHB16 Silent p.E574E 0.09 TCGA-2W-A8YY-01 5 140564613 140564613 T G PCDHB16 3'UTR 0.41 TCGA-2W-A8YY-01 5 140574362 140574362 C T PCDHB10 Missense_Mutation p.T746I 0.28 deleterious_low_confidence(0) possibly_damaging(0.712) TCGA-2W-A8YY-01 5 140579944 140579944 G A PCDHB11 Silent p.A199A 0.46 TCGA-2W-A8YY-01 5 140588393 140588393 A G PCDHB12 5'UTR 0.50 TCGA-2W-A8YY-01 5 140589697 140589697 G T PCDHB12 Missense_Mutation p.E406D 0.09 tolerated_low_confidence(0.19) benign(0.097) TCGA-2W-A8YY-01 5 140590287 140590287 C T PCDHB12 Missense_Mutation p.S603L 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-2W-A8YY-01 5 140591072 140591072 T C PCDHB12 3'UTR 0.43 TCGA-2W-A8YY-01 5 140591537 140591537 G A PCDHB12 3'UTR 0.36 TCGA-2W-A8YY-01 5 140594499 140594499 G A PCDHB13 Silent p.T268T 0.33 TCGA-2W-A8YY-01 5 140594777 140594777 C T PCDHB13 Missense_Mutation p.A361V 0.44 deleterious_low_confidence(0.03) benign(0.005) TCGA-2W-A8YY-01 5 140595118 140595118 G A PCDHB13 Missense_Mutation p.A475T 0.09 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-2W-A8YY-01 5 140595649 140595649 C T PCDHB13 Missense_Mutation p.R652C 0.14 deleterious_low_confidence(0.01) benign(0.09) TCGA-2W-A8YY-01 5 140604903 140604903 C A PCDHB14 Missense_Mutation p.A609D 0.43 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-2W-A8YY-01 5 140604975 140604975 G A PCDHB14 Missense_Mutation p.R633H 0.57 deleterious_low_confidence(0) benign(0.271) TCGA-2W-A8YY-01 5 140614593 140614593 C T PCDHB18 RNA 0.26 TCGA-2W-A8YY-01 5 140614644 140614644 C T PCDHB18 RNA 0.36 TCGA-2W-A8YY-01 5 140615525 140615525 G A PCDHB18 RNA 0.43 TCGA-2W-A8YY-01 5 140616245 140616245 C A PCDHB18 RNA 0.38 TCGA-2W-A8YY-01 5 140625881 140625881 G A PCDHB15 Silent p.A245A 0.38 TCGA-2W-A8YY-01 5 140711778 140711778 C T PCDHGA1 Silent p.S509S 0.37 TCGA-2W-A8YY-01 5 140712227 140712227 C T PCDHGA1 Missense_Mutation p.T659M 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.805) TCGA-2W-A8YY-01 5 140720011 140720011 C T PCDHGA2 Silent p.F491F 0.50 TCGA-2W-A8YY-01 5 140720514 140720514 C T PCDHGA2 Missense_Mutation p.T659M 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-2W-A8YY-01 5 140725310 140725310 C T PCDHGA3 Silent p.D570D 0.34 TCGA-2W-A8YY-01 5 140725871 140725871 C A PCDHGA3 Silent p.V757V 0.30 TCGA-2W-A8YY-01 5 140725928 140725928 G A PCDHGA3 Silent p.A776A 0.46 TCGA-2W-A8YY-01 5 140731073 140731073 G A PCDHGB1 Missense_Mutation p.V416I 0.35 tolerated(1) benign(0.05) TCGA-2W-A8YY-01 5 140741157 140741157 C T PCDHGB2 Silent p.G485G 0.08 TCGA-2W-A8YY-01 5 140741571 140741571 G A PCDHGB2 Silent p.T623T 0.28 TCGA-2W-A8YY-01 5 140744742 140744742 G A PCDHGA5 Missense_Mutation p.R282H 0.29 tolerated_low_confidence(0.21) benign(0.031) TCGA-2W-A8YY-01 5 140750782 140750782 A C PCDHGB3 Missense_Mutation p.N274T 0.60 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 5 140751431 140751431 C T PCDHGB3 Silent p.Y490Y 0.66 TCGA-2W-A8YY-01 5 140751505 140751505 T C PCDHGB3 Missense_Mutation p.F515S 0.08 deleterious(0.02) probably_damaging(0.96) TCGA-2W-A8YY-01 5 140755124 140755124 G A PCDHGA6 Missense_Mutation p.A492T 0.35 tolerated_low_confidence(0.4) benign(0.023) TCGA-2W-A8YY-01 5 140762693 140762693 C T PCDHGA7 Missense_Mutation p.A76V 0.14 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-2W-A8YY-01 5 140764077 140764077 C T PCDHGA7 Silent p.S537S 0.12 TCGA-2W-A8YY-01 5 140764187 140764187 G A PCDHGA7 Missense_Mutation p.G574D 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 140772815 140772815 C T PCDHGA8 Silent p.I145I 0.29 TCGA-2W-A8YY-01 5 140773181 140773181 C T PCDHGA8 Silent p.S267S 0.31 TCGA-2W-A8YY-01 5 140773480 140773480 C T PCDHGA8 Missense_Mutation p.A367V 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.595) TCGA-2W-A8YY-01 5 140774266 140774266 C T PCDHGA8 Missense_Mutation p.A629V 0.09 deleterious_low_confidence(0.04) benign(0.186) TCGA-2W-A8YY-01 5 140784036 140784036 C A PCDHGA9 Missense_Mutation p.S506Y 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-2W-A8YY-01 5 140788116 140788116 T - PCDHGB6 Frame_Shift_Del p.H118Mfs*5 0.26 TCGA-2W-A8YY-01 5 140788548 140788548 C A PCDHGB6 Missense_Mutation p.P260H 0.33 tolerated(0.55) possibly_damaging(0.726) TCGA-2W-A8YY-01 5 140797611 140797611 C T PCDHGB7 Missense_Mutation p.S62L 0.45 tolerated(0.24) possibly_damaging(0.821) TCGA-2W-A8YY-01 5 140801248 140801248 C T PCDHGA11 Nonsense_Mutation p.R152* 0.20 TCGA-2W-A8YY-01 5 140806773 140806773 G A PCDHGB6 Intron 0.40 TCGA-2W-A8YY-01 5 140857942 140857942 G A PCDHGC3 Silent p.S753S 0.10 TCGA-2W-A8YY-01 5 140865294 140865294 G A PCDHGC4 Missense_Mutation p.R185H 0.12 tolerated(0.21) possibly_damaging(0.583) TCGA-2W-A8YY-01 5 140866352 140866352 C T PCDHGC4 Missense_Mutation p.R538W 0.27 deleterious(0) possibly_damaging(0.515) TCGA-2W-A8YY-01 5 140870351 140870351 G A PCDHGC5 Missense_Mutation p.R515Q 0.46 tolerated(0.09) possibly_damaging(0.591) TCGA-2W-A8YY-01 5 140870475 140870475 C T PCDHGC5 Silent p.D556D 0.11 TCGA-2W-A8YY-01 5 140870833 140870833 A - PCDHGC5 Frame_Shift_Del p.K676Nfs*23 0.35 TCGA-2W-A8YY-01 5 140890958 140890958 C T PCDHGB6 3'UTR 0.32 TCGA-2W-A8YY-01 5 1409878 1409878 G A SLC6A3 Silent p.I452I 0.33 TCGA-2W-A8YY-01 5 141009282 141009282 C T HDAC3 Missense_Mutation p.D149N 0.51 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 141019514 141019514 C T RELL2 Silent p.R177R 0.41 TCGA-2W-A8YY-01 5 141024481 141024481 G A FCHSD1 Missense_Mutation p.T490M 0.40 tolerated(0.1) benign(0.149) TCGA-2W-A8YY-01 5 141033894 141033894 C A ARAP3 Missense_Mutation p.D1420Y 0.39 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-2W-A8YY-01 5 141050084 141050084 C T ARAP3 Missense_Mutation p.R701Q 0.36 deleterious(0.05) probably_damaging(0.914) TCGA-2W-A8YY-01 5 141242731 141242731 C T PCDH1 Intron 0.38 TCGA-2W-A8YY-01 5 141243283 141243283 C T PCDH1 Silent p.A871A 0.36 TCGA-2W-A8YY-01 5 141334676 141334676 C T PCDH12 Missense_Mutation p.R914Q 0.45 deleterious(0.04) benign(0.44) TCGA-2W-A8YY-01 5 141353306 141353306 C T RNF14 Silent p.S51S 0.37 TCGA-2W-A8YY-01 5 141358002 141358002 G A RNF14 Silent p.K147K 0.42 TCGA-2W-A8YY-01 5 141358076 141358076 C A RNF14 Missense_Mutation p.A172D 0.32 tolerated(0.4) benign(0.049) TCGA-2W-A8YY-01 5 1422009 1422009 G A SLC6A3 Silent p.G258G 0.44 TCGA-2W-A8YY-01 5 142287337 142287337 G A ARHGAP26 Missense_Mutation p.V301I 0.42 tolerated(0.83) benign(0.097) TCGA-2W-A8YY-01 5 142602682 142602682 C A ARHGAP26 3'UTR 0.17 TCGA-2W-A8YY-01 5 14336705 14336705 G A TRIO Missense_Mutation p.E639K 0.45 benign(0.046) TCGA-2W-A8YY-01 5 143537960 143537960 A G YIPF5 3'UTR 0.40 TCGA-2W-A8YY-01 5 143586487 143586487 G T KCTD16 Missense_Mutation p.K70N 0.09 deleterious(0) possibly_damaging(0.782) TCGA-2W-A8YY-01 5 143853504 143853504 G A KCTD16 Missense_Mutation p.G372S 0.55 tolerated(0.27) benign(0.029) TCGA-2W-A8YY-01 5 143854175 143854175 C T KCTD16 3'UTR 0.31 TCGA-2W-A8YY-01 5 143855089 143855089 T C KCTD16 3'UTR 0.29 TCGA-2W-A8YY-01 5 14389421 14389421 T C TRIO Silent p.S1324S 0.33 TCGA-2W-A8YY-01 5 14405976 14405976 A G TRIO Missense_Mutation p.K1579R 0.10 possibly_damaging(0.624) TCGA-2W-A8YY-01 5 14492823 14492823 G A TRIO Missense_Mutation p.A2594T 0.23 benign(0.069) TCGA-2W-A8YY-01 5 145317850 145317850 T C SH3RF2 Missense_Mutation p.V120A 0.30 tolerated(0.46) benign(0.005) TCGA-2W-A8YY-01 5 145465066 145465066 G T PLAC8L1 Silent p.T117T 0.27 TCGA-2W-A8YY-01 5 145522475 145522475 A G LARS Missense_Mutation p.Y684H 0.27 deleterious(0) possibly_damaging(0.716) TCGA-2W-A8YY-01 5 145523828 145523828 A T LARS Splice_Site p.X580_splice 0.38 TCGA-2W-A8YY-01 5 145533314 145533314 C A LARS Missense_Mutation p.D405Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 145598583 145598583 T C RBM27 Missense_Mutation p.V32A 0.42 deleterious(0) possibly_damaging(0.905) TCGA-2W-A8YY-01 5 145641216 145641216 G A RBM27 Silent p.P679P 0.27 TCGA-2W-A8YY-01 5 145649004 145649004 A C RBM27 Missense_Mutation p.K850Q 0.48 deleterious(0) possibly_damaging(0.855) TCGA-2W-A8YY-01 5 145666477 145666477 G A RBM27 3'UTR 0.24 TCGA-2W-A8YY-01 5 145719481 145719481 C T POU4F3 Missense_Mutation p.P164L 0.26 tolerated(0.13) benign(0.026) TCGA-2W-A8YY-01 5 145719647 145719647 C T POU4F3 Silent p.G219G 0.35 TCGA-2W-A8YY-01 5 145836768 145836768 C T TCERG1 Missense_Mutation p.P103L 0.30 deleterious(0.01) possibly_damaging(0.713) TCGA-2W-A8YY-01 5 145851055 145851055 C A TCERG1 Missense_Mutation p.P506H 0.27 deleterious(0) unknown(0) TCGA-2W-A8YY-01 5 145890094 145890094 T C TCERG1 Silent p.C1062C 0.34 TCGA-2W-A8YY-01 5 145890777 145890777 C T TCERG1 3'UTR 0.32 TCGA-2W-A8YY-01 5 145969759 145969759 G T PPP2R2B Missense_Mutation p.F364L 0.26 tolerated(0.45) benign(0.079) TCGA-2W-A8YY-01 5 1462226 1462226 G A LPCAT1 3'UTR 0.67 TCGA-2W-A8YY-01 5 146703545 146703545 C T STK32A Silent p.N115N 0.33 TCGA-2W-A8YY-01 5 146750221 146750221 C T STK32A Missense_Mutation p.P222L 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 146773637 146773637 C T DPYSL3 Silent p.A672A 0.38 TCGA-2W-A8YY-01 5 146778698 146778698 C T DPYSL3 Missense_Mutation p.V524I 0.14 deleterious(0.04) benign(0.024) TCGA-2W-A8YY-01 5 14693111 14693111 G A FAM105B Missense_Mutation p.R338Q 0.13 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 5 147281241 147281241 T G C5orf46 Missense_Mutation p.I56L 0.40 deleterious(0.01) benign(0.068) TCGA-2W-A8YY-01 5 1474701 1474701 T A LPCAT1 Missense_Mutation p.E333D 0.33 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 5 147473924 147473924 G A SPINK5 Missense_Mutation p.C225Y 0.42 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 5 147480035 147480035 C T SPINK5 Nonsense_Mutation p.R371* 0.52 TCGA-2W-A8YY-01 5 147484537 147484537 G T SPINK5 Missense_Mutation p.A485S 0.46 tolerated(0.13) benign(0.272) TCGA-2W-A8YY-01 5 147716007 147716007 G A SPINK9 Silent p.T26T 0.34 TCGA-2W-A8YY-01 5 147781553 147781553 G T FBXO38 Missense_Mutation p.D91Y 0.53 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 5 148206303 148206303 C T ADRB2 5'UTR 0.44 TCGA-2W-A8YY-01 5 148521666 148521666 C T ABLIM3 Missense_Mutation p.T3I 0.20 deleterious(0.04) benign(0.001) TCGA-2W-A8YY-01 5 148639827 148639827 C A ABLIM3 3'UTR 0.28 TCGA-2W-A8YY-01 5 148697403 148697403 C T AFAP1L1 Missense_Mutation p.A460V 0.56 tolerated(0.22) benign(0.072) TCGA-2W-A8YY-01 5 148715238 148715238 C A AFAP1L1 Missense_Mutation p.P746T 0.37 tolerated(0.11) benign(0.354) TCGA-2W-A8YY-01 5 148719954 148719954 C T AFAP1L1 3'UTR 0.35 TCGA-2W-A8YY-01 5 148730582 148730582 A G GRPEL2 Missense_Mutation p.T139A 0.37 tolerated(0.29) benign(0.015) TCGA-2W-A8YY-01 5 148742276 148742276 C T PCYOX1L Silent p.I55I 0.28 TCGA-2W-A8YY-01 5 148989245 148989245 G A ARHGEF37 Missense_Mutation p.V149I 0.39 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 5 1489908 1489908 C A LPCAT1 Missense_Mutation p.V187L 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-2W-A8YY-01 5 149240510 149240510 C - PDE6A Frame_Shift_Del p.G844Efs*48 0.31 TCGA-2W-A8YY-01 5 149274765 149274765 G A PDE6A Missense_Mutation p.T570I 0.37 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 5 149361256 149361256 C T SLC26A2 Silent p.C700C 0.39 TCGA-2W-A8YY-01 5 149380345 149380345 T C TIGD6 5'UTR 0.24 TCGA-2W-A8YY-01 5 149421409 149421409 G A HMGXB3 Nonsense_Mutation p.W869* 0.44 TCGA-2W-A8YY-01 5 149425195 149425195 C T HMGXB3 Missense_Mutation p.A966V 0.09 tolerated(0.08) benign(0.354) TCGA-2W-A8YY-01 5 149433564 149433564 T C CSF1R 3'UTR 0.26 TCGA-2W-A8YY-01 5 149439386 149439386 T C CSF1R Missense_Mutation p.D670G 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 149441360 149441360 C T CSF1R Missense_Mutation p.S560N 0.38 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 5 149460402 149460402 T C CSF1R Missense_Mutation p.T79A 0.26 deleterious(0.01) possibly_damaging(0.709) TCGA-2W-A8YY-01 5 1494932 1494932 C T LPCAT1 Missense_Mutation p.E126K 0.42 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 5 1494981 1494981 G A LPCAT1 Silent p.A109A 0.22 TCGA-2W-A8YY-01 5 149501578 149501578 C T PDGFRB Missense_Mutation p.D737N 0.39 tolerated(0.34) benign(0.136) TCGA-2W-A8YY-01 5 149512366 149512366 G A PDGFRB Silent p.G358G 0.43 TCGA-2W-A8YY-01 5 149513211 149513211 C T PDGFRB Missense_Mutation p.C291Y 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 149599129 149599131 CCG - CAMK2A 3'Flank 0.29 TCGA-2W-A8YY-01 5 149599180 149599180 C T CAMK2A 3'Flank 0.45 TCGA-2W-A8YY-01 5 149602033 149602033 G A CAMK2A 3'Flank 0.54 TCGA-2W-A8YY-01 5 149676731 149676731 G A ARSI 3'UTR 0.44 TCGA-2W-A8YY-01 5 149743717 149743717 C T TCOF1 Missense_Mutation p.A69V 0.23 deleterious(0.02) benign(0.119) TCGA-2W-A8YY-01 5 149773029 149773029 C T TCOF1 Missense_Mutation p.S1232F 0.20 deleterious(0.02) benign(0.236) TCGA-2W-A8YY-01 5 149786471 149786471 C T CD74 Silent p.A117A 0.29 TCGA-2W-A8YY-01 5 149786486 149786486 C T CD74 Silent p.P112P 0.38 TCGA-2W-A8YY-01 5 149915421 149915421 C T NDST1 Missense_Mutation p.R471C 0.21 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 5 149933091 149933091 G A NDST1 3'UTR 0.27 TCGA-2W-A8YY-01 5 149998160 149998160 G A SYNPO Silent p.P77P 0.35 TCGA-2W-A8YY-01 5 150027752 150027752 G A SYNPO Missense_Mutation p.S216N 0.44 tolerated(0.53) benign(0.086) TCGA-2W-A8YY-01 5 150028560 150028560 G A SYNPO Silent p.R485R 0.40 TCGA-2W-A8YY-01 5 150073713 150073713 G A RBM22 Missense_Mutation p.A279V 0.32 deleterious(0.02) benign(0.356) TCGA-2W-A8YY-01 5 150110201 150110201 G A DCTN4 Missense_Mutation p.R283C 0.46 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 5 150274881 150274881 A T ZNF300 3'UTR 0.32 TCGA-2W-A8YY-01 5 150311776 150311776 T C ZNF300P1 RNA 0.47 TCGA-2W-A8YY-01 5 150409656 150409656 C T TNIP1 3'UTR 0.33 TCGA-2W-A8YY-01 5 150516844 150516844 C T ANXA6 Silent p.L119L 0.42 TCGA-2W-A8YY-01 5 150563147 150563147 G A CCDC69 Missense_Mutation p.R248C 0.41 deleterious(0) possibly_damaging(0.901) TCGA-2W-A8YY-01 5 150646975 150646975 G A GM2A Missense_Mutation p.G182D 0.54 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 5 150660591 150660591 G A SLC36A3 Silent p.A417A 0.36 TCGA-2W-A8YY-01 5 150867636 150867636 C T SLC36A1 Missense_Mutation p.L418F 0.20 deleterious(0.05) benign(0.434) TCGA-2W-A8YY-01 5 150868915 150868915 C T SLC36A1 3'UTR 0.44 TCGA-2W-A8YY-01 5 150889713 150889713 T C FAT2 Silent p.P3976P 0.47 TCGA-2W-A8YY-01 5 150920158 150920158 G A FAT2 Silent p.D3003D 0.58 TCGA-2W-A8YY-01 5 150923780 150923780 C T FAT2 Missense_Mutation p.R2303Q 0.41 benign(0.046) TCGA-2W-A8YY-01 5 150924735 150924735 T G FAT2 Missense_Mutation p.K1985Q 0.21 benign(0.034) TCGA-2W-A8YY-01 5 150942973 150942973 C A FAT2 Missense_Mutation p.D1163Y 0.15 probably_damaging(1) TCGA-2W-A8YY-01 5 150948304 150948304 C T FAT2 Silent p.A63A 0.35 TCGA-2W-A8YY-01 5 150948400 150948400 C T FAT2 Nonsense_Mutation p.W31* 0.50 TCGA-2W-A8YY-01 5 151047159 151047159 T C SPARC Missense_Mutation p.I152V 0.36 deleterious(0.04) benign(0.103) TCGA-2W-A8YY-01 5 151049301 151049301 G A SPARC Silent p.F125F 0.56 TCGA-2W-A8YY-01 5 151125885 151125885 G A ATOX1 3'UTR 0.35 TCGA-2W-A8YY-01 5 151131329 151131329 G T ATOX1 Missense_Mutation p.F6L 0.57 deleterious(0.02) possibly_damaging(0.906) TCGA-2W-A8YY-01 5 151170511 151170511 T C G3BP1 Missense_Mutation p.V80A 0.10 deleterious(0) possibly_damaging(0.699) TCGA-2W-A8YY-01 5 151771916 151771916 G A NMUR2 Missense_Mutation p.R362W 0.48 deleterious(0) possibly_damaging(0.513) TCGA-2W-A8YY-01 5 153372399 153372399 C T FAM114A2 3'UTR 0.29 TCGA-2W-A8YY-01 5 153432929 153432929 C T MFAP3 Nonsense_Mutation p.R249* 0.34 TCGA-2W-A8YY-01 5 153433864 153433864 G A MFAP3 3'UTR 0.22 TCGA-2W-A8YY-01 5 153435461 153435461 C T MFAP3 3'UTR 0.59 TCGA-2W-A8YY-01 5 153795487 153795487 C T GALNT10 Missense_Mutation p.R550C 0.39 tolerated(0.09) possibly_damaging(0.875) TCGA-2W-A8YY-01 5 153857216 153857216 C T HAND1 Missense_Mutation p.R118H 0.09 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 153975571 153975571 C A MIR3141 3'Flank 0.50 TCGA-2W-A8YY-01 5 154173539 154173539 C T LARP1 Missense_Mutation p.R273C 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 154275847 154275847 C T GEMIN5 Silent p.K1134K 0.20 TCGA-2W-A8YY-01 5 156188984 156188984 T G SGCD 3'Flank 0.23 TCGA-2W-A8YY-01 5 156749967 156749967 G A CYFIP2 Intron 0.26 TCGA-2W-A8YY-01 5 156768119 156768119 G A CYFIP2 Missense_Mutation p.R850Q 0.52 deleterious(0) probably_damaging(0.975) TCGA-2W-A8YY-01 5 156817638 156817638 C T CYFIP2 Nonsense_Mutation p.Q1160* 0.53 TCGA-2W-A8YY-01 5 156908898 156908898 T C ADAM19 Silent p.P868P 0.42 TCGA-2W-A8YY-01 5 157053327 157053327 C A SOX30 3'UTR 0.41 TCGA-2W-A8YY-01 5 157078736 157078736 G A SOX30 Silent p.D117D 0.28 TCGA-2W-A8YY-01 5 157182174 157182174 C T LSM11 Nonsense_Mutation p.R329* 0.30 TCGA-2W-A8YY-01 5 157214743 157214743 C T CLINT1 Missense_Mutation p.G615R 0.32 tolerated(0.07) benign(0.043) TCGA-2W-A8YY-01 5 158588287 158588287 G A RNF145 Missense_Mutation p.A568V 0.53 deleterious(0.01) possibly_damaging(0.644) TCGA-2W-A8YY-01 5 158630606 158630606 A G RNF145 Missense_Mutation p.L37P 0.19 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 5 158712814 158712814 T C UBLCP1 3'UTR 0.49 TCGA-2W-A8YY-01 5 158749469 158749469 G A IL12B Missense_Mutation p.R139C 0.17 tolerated(0.2) benign(0.041) TCGA-2W-A8YY-01 5 1593390 1593390 G T CTD-2012J19.3 5'Flank 0.31 TCGA-2W-A8YY-01 5 159344340 159344340 G A ADRA1B Missense_Mutation p.R143H 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 159520131 159520131 C T PWWP2A Missense_Mutation p.R509H 0.30 deleterious(0.02) probably_damaging(0.98) TCGA-2W-A8YY-01 5 159680489 159680489 G A CCNJL Missense_Mutation p.H402Y 0.55 deleterious(0) benign(0.071) TCGA-2W-A8YY-01 5 159776261 159776261 C T C1QTNF2 Missense_Mutation p.G303R 0.70 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 159821883 159821883 G T C5orf54 Silent p.L205L 0.53 TCGA-2W-A8YY-01 5 159996604 159996604 G A ATP10B Silent p.C1279C 0.53 TCGA-2W-A8YY-01 5 160047706 160047706 G A ATP10B Silent p.G688G 0.37 TCGA-2W-A8YY-01 5 160717693 160717693 T G GABRB2 3'UTR 0.40 TCGA-2W-A8YY-01 5 160717992 160717992 G T GABRB2 3'UTR 0.49 TCGA-2W-A8YY-01 5 161324340 161324340 C T GABRA1 Missense_Mutation p.P428L 0.61 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 161520924 161520924 C T GABRG2 Silent p.V66V 0.23 TCGA-2W-A8YY-01 5 162870787 162870787 G A CCNG1 3'UTR 0.66 TCGA-2W-A8YY-01 5 162871190 162871190 A G CCNG1 3'UTR 0.54 TCGA-2W-A8YY-01 5 162871795 162871795 G A CCNG1 3'UTR 0.16 TCGA-2W-A8YY-01 5 163219 163219 G A PLEKHG4B Missense_Mutation p.G655D 0.47 tolerated(0.53) benign(0.19) TCGA-2W-A8YY-01 5 16463618 16463618 C T ZNF622 Missense_Mutation p.D287N 0.10 tolerated(0.07) possibly_damaging(0.85) TCGA-2W-A8YY-01 5 16668531 16668531 G A MYO10 Missense_Mutation p.A1977V 0.25 tolerated(0.19) probably_damaging(0.986) TCGA-2W-A8YY-01 5 16703118 16703118 C T MYO10 Missense_Mutation p.R809K 0.37 tolerated(0.44) benign(0.002) TCGA-2W-A8YY-01 5 167525046 167525046 G A TENM2 Missense_Mutation p.C576Y 0.20 deleterious(0.01) probably_damaging(0.971) TCGA-2W-A8YY-01 5 16766292 16766292 G A MYO10 Missense_Mutation p.A359V 0.35 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 5 167891964 167891964 G A WWC1 Silent p.K1055K 0.29 TCGA-2W-A8YY-01 5 167894927 167894927 G A WWC1 Missense_Mutation p.R1084Q 0.58 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 167924315 167924315 G A RARS Missense_Mutation p.V262I 0.24 tolerated(0.28) benign(0.007) TCGA-2W-A8YY-01 5 167946118 167946118 C A RARS Missense_Mutation p.L636M 0.29 tolerated(0.07) probably_damaging(0.994) TCGA-2W-A8YY-01 5 167957254 167957254 G A FBLL1 Missense_Mutation p.V249M 0.44 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 5 169015554 169015554 G A SPDL1 Missense_Mutation p.R45H 0.30 tolerated(0.1) possibly_damaging(0.803) TCGA-2W-A8YY-01 5 169018126 169018126 C T SPDL1 Silent p.C78C 0.55 TCGA-2W-A8YY-01 5 169310496 169310496 C T FAM196B Missense_Mutation p.G136D 0.68 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 5 169477271 169477271 C A DOCK2 Missense_Mutation p.F1361L 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 169701321 169701321 C T LCP2 Missense_Mutation p.G103E 0.18 tolerated(0.11) probably_damaging(1) TCGA-2W-A8YY-01 5 169702802 169702802 C T LCP2 Missense_Mutation p.R84H 0.40 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 169931386 169931386 G A KCNIP1 5'Flank 0.30 TCGA-2W-A8YY-01 5 170876180 170876180 G A FGF18 Missense_Mutation p.G94S 0.25 deleterious(0.02) benign(0.338) TCGA-2W-A8YY-01 5 171290367 171290367 C T FBXW11 3'UTR 0.22 TCGA-2W-A8YY-01 5 171318516 171318516 G A FBXW11 Silent p.Y248Y 0.54 TCGA-2W-A8YY-01 5 171337574 171337574 A G FBXW11 Splice_Site p.X125_splice 0.56 TCGA-2W-A8YY-01 5 171661294 171661294 C A UBTD2 Missense_Mutation p.D47Y 0.32 deleterious(0.01) benign(0.111) TCGA-2W-A8YY-01 5 171760952 171760952 G A SH3PXD2B 3'UTR 0.62 TCGA-2W-A8YY-01 5 171777525 171777525 G A SH3PXD2B Missense_Mutation p.P285L 0.38 tolerated(0.13) benign(0.009) TCGA-2W-A8YY-01 5 172113744 172113744 C T NEURL1B Missense_Mutation p.P495L 0.57 tolerated(0.32) benign(0.052) TCGA-2W-A8YY-01 5 172561629 172561629 C T CREBRF 3'UTR 0.15 TCGA-2W-A8YY-01 5 173316970 173316970 A G CPEB4 Silent p.E78E 0.22 TCGA-2W-A8YY-01 5 173384538 173384538 C T CPEB4 3'UTR 0.23 TCGA-2W-A8YY-01 5 173386112 173386112 T C CPEB4 3'UTR 0.68 TCGA-2W-A8YY-01 5 173386235 173386235 G A CPEB4 3'UTR 0.59 TCGA-2W-A8YY-01 5 174042 174042 A G PLEKHG4B Missense_Mutation p.I1055V 0.67 tolerated(0.07) possibly_damaging(0.855) TCGA-2W-A8YY-01 5 174940525 174940525 C T SFXN1 Missense_Mutation p.A219V 0.56 tolerated(0.19) benign(0.002) TCGA-2W-A8YY-01 5 174940566 174940566 A G SFXN1 Missense_Mutation p.R233G 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-2W-A8YY-01 5 175112757 175112757 A G HRH2 3'UTR 0.62 TCGA-2W-A8YY-01 5 175306890 175306890 A G CPLX2 Missense_Mutation p.K83E 0.51 tolerated(0.79) benign(0.055) TCGA-2W-A8YY-01 5 175665495 175665495 G A SIMC1 5'UTR 0.28 TCGA-2W-A8YY-01 5 175717239 175717239 C T SIMC1 Intron 0.30 TCGA-2W-A8YY-01 5 175777687 175777687 C T KIAA1191 Missense_Mutation p.A130T 0.31 tolerated(0.31) probably_damaging(0.992) TCGA-2W-A8YY-01 5 175782583 175782583 G A KIAA1191 Silent p.H66H 0.45 TCGA-2W-A8YY-01 5 175795902 175795902 C T ARL10 Missense_Mutation p.R160W 0.20 deleterious(0) benign(0.396) TCGA-2W-A8YY-01 5 175843353 175843353 G T CLTB Missense_Mutation p.D4E 0.43 tolerated(0.36) unknown(0) TCGA-2W-A8YY-01 5 175915994 175915994 C T FAF2 Missense_Mutation p.R104W 0.23 deleterious(0) possibly_damaging(0.861) TCGA-2W-A8YY-01 5 175916011 175916011 G A FAF2 Silent p.T109T 0.65 TCGA-2W-A8YY-01 5 175923546 175923546 C T FAF2 Nonsense_Mutation p.R241* 0.27 TCGA-2W-A8YY-01 5 175936813 175936813 C T FAF2 3'UTR 0.24 TCGA-2W-A8YY-01 5 176011668 176011668 G A CDHR2 Missense_Mutation p.V796M 0.33 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 5 176022599 176022599 C T CDHR2 Missense_Mutation p.R1287W 0.57 deleterious(0) possibly_damaging(0.53) TCGA-2W-A8YY-01 5 176072937 176072937 G T EIF4E1B Missense_Mutation p.A229S 0.10 tolerated(0.16) probably_damaging(0.997) TCGA-2W-A8YY-01 5 176304896 176304896 A G UNC5A Missense_Mutation p.D546G 0.25 deleterious(0) possibly_damaging(0.772) TCGA-2W-A8YY-01 5 176305377 176305377 C A UNC5A Missense_Mutation p.L668I 0.12 tolerated(0.17) benign(0.072) TCGA-2W-A8YY-01 5 176311047 176311047 C T HK3 Missense_Mutation p.R649H 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 176477712 176477712 A G ZNF346 Intron 0.46 TCGA-2W-A8YY-01 5 176477820 176477820 G A ZNF346 Missense_Mutation p.D196N 0.50 tolerated(1) benign(0.025) TCGA-2W-A8YY-01 5 176520460 176520460 C T FGFR4 Silent p.G435G 0.40 TCGA-2W-A8YY-01 5 176520698 176520698 G A FGFR4 Missense_Mutation p.V481I 0.53 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 5 176523650 176523650 C A FGFR4 Silent p.G687G 0.24 TCGA-2W-A8YY-01 5 176636807 176636807 C T NSD1 Silent p.D469D 0.12 TCGA-2W-A8YY-01 5 176638114 176638114 A G NSD1 Missense_Mutation p.Y905C 0.60 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 176665378 176665378 C T NSD1 Silent p.G1354G 0.75 TCGA-2W-A8YY-01 5 176673711 176673711 C T NSD1 Nonsense_Mutation p.R1471* 0.57 TCGA-2W-A8YY-01 5 176687155 176687155 T C NSD1 Missense_Mutation p.F1711S 0.29 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 176720870 176720870 C T NSD1 Silent p.C2167C 0.19 TCGA-2W-A8YY-01 5 176720964 176720964 C T NSD1 Missense_Mutation p.R2199C 0.61 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 5 176737512 176737512 C T MXD3 Missense_Mutation p.R79Q 0.28 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 5 176759160 176759160 C G LMAN2 Missense_Mutation p.G333A 0.31 tolerated(0.24) probably_damaging(0.996) TCGA-2W-A8YY-01 5 176764527 176764527 T G LMAN2 Splice_Site p.X172_splice 0.44 TCGA-2W-A8YY-01 5 176798378 176798378 A C RGS14 Missense_Mutation p.K455T 0.22 tolerated(0.6) benign(0) TCGA-2W-A8YY-01 5 176799490 176799490 C T RGS14 3'UTR 0.27 TCGA-2W-A8YY-01 5 176825153 176825153 G A SLC34A1 Missense_Mutation p.A596T 0.37 tolerated(0.33) benign(0.007) TCGA-2W-A8YY-01 5 176829176 176829176 G A F12 3'UTR 0.62 TCGA-2W-A8YY-01 5 176829326 176829326 G A F12 Silent p.Y605Y 0.31 TCGA-2W-A8YY-01 5 176859023 176859023 G A GRK6 Missense_Mutation p.R59Q 0.58 tolerated(0.37) benign(0.014) TCGA-2W-A8YY-01 5 176883774 176883774 G T DBN1 3'Flank 0.29 TCGA-2W-A8YY-01 5 176885421 176885421 C T DBN1 Missense_Mutation p.A474T 0.19 tolerated(0.88) benign(0.003) TCGA-2W-A8YY-01 5 176887488 176887488 G A DBN1 Silent p.V302V 0.09 TCGA-2W-A8YY-01 5 176915103 176915103 G A PDLIM7 Missense_Mutation p.P339L 0.29 deleterious(0) possibly_damaging(0.796) TCGA-2W-A8YY-01 5 176936617 176936617 C T DOK3 Silent p.K31K 0.28 TCGA-2W-A8YY-01 5 177059074 177059074 G A RP11-1277A3.2 Intron 0.32 TCGA-2W-A8YY-01 5 177302776 177302776 T C RP11-423H2.5 5'Flank 0.56 TCGA-2W-A8YY-01 5 177309390 177309390 T C RP11-423H2.1 RNA 0.15 TCGA-2W-A8YY-01 5 177309483 177309483 T C RP11-423H2.1 RNA 0.12 TCGA-2W-A8YY-01 5 177547183 177547183 G A N4BP3 Missense_Mutation p.R112H 0.58 deleterious(0.05) benign(0.005) TCGA-2W-A8YY-01 5 177637204 177637204 G A HNRNPAB Missense_Mutation p.G287R 0.45 tolerated(0.17) unknown(0) TCGA-2W-A8YY-01 5 177683894 177683894 G A COL23A1 Silent p.N270N 0.13 TCGA-2W-A8YY-01 5 178043942 178043942 G A CLK4 Silent p.I161I 0.20 TCGA-2W-A8YY-01 5 178202287 178202287 C T AACSP1 RNA 0.54 TCGA-2W-A8YY-01 5 178310103 178310103 G A ZNF354B Missense_Mutation p.S217N 0.29 tolerated(1) benign(0.006) TCGA-2W-A8YY-01 5 178459432 178459433 - A ZNF879 Frame_Shift_Ins p.N163Kfs*10 0.19 TCGA-2W-A8YY-01 5 178459683 178459683 C T ZNF879 Missense_Mutation p.S245L 0.49 deleterious(0) possibly_damaging(0.829) TCGA-2W-A8YY-01 5 178460201 178460201 C T ZNF879 Missense_Mutation p.H418Y 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 178506019 178506019 G T ZNF354C Missense_Mutation p.D196Y 0.47 tolerated(0.21) possibly_damaging(0.744) TCGA-2W-A8YY-01 5 178541161 178541161 C T ADAMTS2 Missense_Mutation p.D1115N 0.13 tolerated(0.42) benign(0.13) TCGA-2W-A8YY-01 5 178770891 178770891 C T ADAMTS2 Missense_Mutation p.M137I 0.16 tolerated(0.13) benign(0.006) TCGA-2W-A8YY-01 5 178989635 178989635 C T RUFY1 Missense_Mutation p.A191V 0.53 deleterious(0.02) possibly_damaging(0.687) TCGA-2W-A8YY-01 5 179045244 179045244 C T HNRNPH1 Missense_Mutation p.R206Q 0.27 tolerated(0.09) benign(0.091) TCGA-2W-A8YY-01 5 179156903 179156903 T - CANX 3'UTR 0.41 TCGA-2W-A8YY-01 5 179203850 179203850 G A MAML1 3'UTR 0.24 TCGA-2W-A8YY-01 5 179226504 179226504 A G MGAT4B Splice_Site p.X362_splice 0.23 TCGA-2W-A8YY-01 5 179228337 179228337 G A MGAT4B Silent p.A200A 0.32 TCGA-2W-A8YY-01 5 179228339 179228339 C T MGAT4B Missense_Mutation p.A200T 0.13 deleterious(0) probably_damaging(0.937) TCGA-2W-A8YY-01 5 179249922 179249922 C T SQSTM1 Intron 0.09 TCGA-2W-A8YY-01 5 179264406 179264406 G A C5orf45 Silent p.F339F 0.24 TCGA-2W-A8YY-01 5 179302013 179302013 A - TBC1D9B Frame_Shift_Del p.F692Sfs*7 0.73 TCGA-2W-A8YY-01 5 179303007 179303007 G A TBC1D9B Missense_Mutation p.L605F 0.56 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 5 179305432 179305432 G A TBC1D9B Silent p.I553I 0.63 TCGA-2W-A8YY-01 5 179305446 179305446 C T TBC1D9B Missense_Mutation p.A549T 0.10 deleterious(0.03) probably_damaging(0.934) TCGA-2W-A8YY-01 5 179394008 179394008 C T RNF130 Silent p.P316P 0.11 TCGA-2W-A8YY-01 5 179528289 179528289 G A RASGEF1C 3'UTR 0.45 TCGA-2W-A8YY-01 5 179545792 179545792 G T RASGEF1C Missense_Mutation p.L328I 0.57 deleterious(0.01) probably_damaging(0.954) TCGA-2W-A8YY-01 5 179739433 179739433 G A GFPT2 Missense_Mutation p.P515S 0.60 tolerated(0.3) benign(0.249) TCGA-2W-A8YY-01 5 179744046 179744046 G A GFPT2 Missense_Mutation p.A324V 0.34 deleterious(0.01) benign(0.048) TCGA-2W-A8YY-01 5 1798717 1798717 G A MRPL36 3'UTR 0.35 TCGA-2W-A8YY-01 5 1798905 1798905 G A MRPL36 Missense_Mutation p.R49C 0.27 deleterious(0.05) benign(0.042) TCGA-2W-A8YY-01 5 180003188 180003188 T G CNOT6 3'UTR 0.26 TCGA-2W-A8YY-01 5 180047945 180047945 C T FLT4 Missense_Mutation p.G744R 0.62 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 5 180047966 180047966 G A FLT4 Missense_Mutation p.R737C 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 180048904 180048904 G A FLT4 Missense_Mutation p.T553I 0.27 tolerated(0.06) probably_damaging(0.937) TCGA-2W-A8YY-01 5 180057230 180057230 G A FLT4 Missense_Mutation p.R170C 0.35 tolerated(0.16) benign(0.002) TCGA-2W-A8YY-01 5 180651327 180651327 A G TRIM41 Missense_Mutation p.S110G 0.44 tolerated(0.5) unknown(0) TCGA-2W-A8YY-01 5 180661148 180661148 C T TRIM41 Intron 0.24 TCGA-2W-A8YY-01 5 1879728 1879728 G A IRX4 Missense_Mutation p.P209L 0.42 deleterious(0) benign(0.419) TCGA-2W-A8YY-01 5 192458 192458 G A LRRC14B Missense_Mutation p.A269T 0.40 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 5 19473321 19473321 C T CDH18 3'UTR 0.33 TCGA-2W-A8YY-01 5 205618 205618 G A CCDC127 Nonsense_Mutation p.R193* 0.40 TCGA-2W-A8YY-01 5 21751333 21751333 G A CDH12 3'UTR 0.28 TCGA-2W-A8YY-01 5 21751466 21751466 G T CDH12 3'UTR 0.42 TCGA-2W-A8YY-01 5 22142564 22142564 C T CDH12 Intron 0.27 TCGA-2W-A8YY-01 5 224493 224493 G A SDHA Missense_Mutation p.V57I 0.09 tolerated_low_confidence(0.6) benign(0.002) TCGA-2W-A8YY-01 5 225663 225663 G A SDHA Missense_Mutation p.A148T 0.38 tolerated_low_confidence(0.47) benign(0.01) TCGA-2W-A8YY-01 5 24492929 24492929 C T CDH10 Missense_Mutation p.E541K 0.47 tolerated(1) possibly_damaging(0.663) TCGA-2W-A8YY-01 5 26881287 26881287 T - CDH9 Frame_Shift_Del p.K776Nfs*19 0.28 TCGA-2W-A8YY-01 5 26902667 26902667 C T CDH9 Missense_Mutation p.E391K 0.42 deleterious(0.03) benign(0.26) TCGA-2W-A8YY-01 5 26915885 26915885 G A CDH9 Missense_Mutation p.L126F 0.13 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 26988261 26988261 G T CDH9 Missense_Mutation p.F60L 0.35 tolerated(0.08) probably_damaging(0.987) TCGA-2W-A8YY-01 5 26988283 26988283 C T CDH9 Missense_Mutation p.R53H 0.21 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 5 26988296 26988296 G A CDH9 Missense_Mutation p.R49C 0.53 deleterious(0.01) benign(0.306) TCGA-2W-A8YY-01 5 26988395 26988395 A G CDH9 Missense_Mutation p.F16L 0.24 tolerated(0.67) benign(0.001) TCGA-2W-A8YY-01 5 2746639 2746639 A G IRX2 3'UTR 0.29 TCGA-2W-A8YY-01 5 2749531 2749531 G A IRX2 Missense_Mutation p.A207V 0.25 tolerated(0.33) benign(0.001) TCGA-2W-A8YY-01 5 2755303 2755303 C T C5orf38 3'UTR 0.50 TCGA-2W-A8YY-01 5 31302333 31302333 C T CDH6 Silent p.D309D 0.37 TCGA-2W-A8YY-01 5 31435918 31435918 T C DROSHA Missense_Mutation p.Y999C 0.28 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 5 31526196 31526196 C T DROSHA Missense_Mutation p.E282K 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.651) TCGA-2W-A8YY-01 5 32069679 32069679 C T PDZD2 Missense_Mutation p.S819F 0.17 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 32088301 32088301 C T PDZD2 Missense_Mutation p.R1583C 0.53 tolerated(0.19) benign(0.004) TCGA-2W-A8YY-01 5 32712464 32712464 C T NPR3 Silent p.H194H 0.29 TCGA-2W-A8YY-01 5 33456260 33456260 C T TARS Silent p.G288G 0.10 TCGA-2W-A8YY-01 5 33549475 33549475 C T ADAMTS12 Missense_Mutation p.C1380Y 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 33649713 33649713 G A ADAMTS12 Missense_Mutation p.P427L 0.47 deleterious(0.01) probably_damaging(0.911) TCGA-2W-A8YY-01 5 33937182 33937182 C T RXFP3 Missense_Mutation p.R113C 0.44 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 5 33944831 33944831 G A SLC45A2 Silent p.V505V 0.39 TCGA-2W-A8YY-01 5 33982434 33982434 C T SLC45A2 Missense_Mutation p.D157N 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 33984430 33984430 C T SLC45A2 Missense_Mutation p.V87M 0.45 deleterious(0) probably_damaging(0.964) TCGA-2W-A8YY-01 5 34033468 34033468 G A C1QTNF3 Missense_Mutation p.R171W 0.34 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 5 34035772 34035772 G A C1QTNF3 Missense_Mutation p.P132L 0.53 tolerated(0.06) possibly_damaging(0.704) TCGA-2W-A8YY-01 5 34831369 34831369 C T RAI14 3'Flank 0.12 TCGA-2W-A8YY-01 5 34832519 34832519 G A RAI14 3'Flank 0.38 TCGA-2W-A8YY-01 5 34919986 34919986 G A BRIX1 Missense_Mutation p.E105K 0.33 deleterious(0) probably_damaging(0.954) TCGA-2W-A8YY-01 5 34937547 34937547 A C DNAJC21 Missense_Mutation p.E185D 0.29 deleterious(0) probably_damaging(0.911) TCGA-2W-A8YY-01 5 35649489 35649489 C T SPEF2 Silent p.F251F 0.30 TCGA-2W-A8YY-01 5 35753809 35753809 C T SPEF2 Silent p.S1138S 0.51 TCGA-2W-A8YY-01 5 35779285 35779285 T G SPEF2 Silent p.L1428L 0.31 TCGA-2W-A8YY-01 5 35904661 35904661 C T CAPSL Missense_Mutation p.A205T 0.35 deleterious(0) benign(0.068) TCGA-2W-A8YY-01 5 35955838 35955838 C T UGT3A1 Missense_Mutation p.V402I 0.37 deleterious(0.01) benign(0.334) TCGA-2W-A8YY-01 5 3600146 3600146 G A IRX1 Missense_Mutation p.G362R 0.42 tolerated(0.34) probably_damaging(0.996) TCGA-2W-A8YY-01 5 3601355 3601355 G A IRX1 3'UTR 0.46 TCGA-2W-A8YY-01 5 37007452 37007452 G A NIPBL Missense_Mutation p.R1372Q 0.29 deleterious(0) possibly_damaging(0.866) TCGA-2W-A8YY-01 5 37186408 37186408 A C C5orf42 Missense_Mutation p.L1390R 0.32 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 5 37299607 37299607 C T NUP155 Missense_Mutation p.A1209T 0.30 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 5 37342665 37342665 G T NUP155 Missense_Mutation p.A360D 0.27 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 37342741 37342741 C T NUP155 Missense_Mutation p.D335N 0.34 deleterious(0) probably_damaging(0.929) TCGA-2W-A8YY-01 5 376786 376786 T C AHRR Silent p.C106C 0.49 TCGA-2W-A8YY-01 5 38418216 38418216 G A EGFLAM Missense_Mutation p.A515T 0.13 tolerated(0.19) benign(0.131) TCGA-2W-A8YY-01 5 38425139 38425139 C T EGFLAM Silent p.A585A 0.37 TCGA-2W-A8YY-01 5 38477875 38477875 T A LIFR 3'UTR 0.10 TCGA-2W-A8YY-01 5 38481377 38481377 G A LIFR 3'UTR 0.35 TCGA-2W-A8YY-01 5 38486079 38486079 C T LIFR Missense_Mutation p.R780H 0.36 tolerated(0.46) benign(0.003) TCGA-2W-A8YY-01 5 38925380 38925380 G T OSMR Nonsense_Mutation p.E707* 0.43 TCGA-2W-A8YY-01 5 38939172 38939172 A - RICTOR 3'UTR 0.22 TCGA-2W-A8YY-01 5 38941695 38941695 T C RICTOR 3'UTR 0.41 TCGA-2W-A8YY-01 5 38958931 38958931 G T RICTOR Silent p.A727A 0.47 TCGA-2W-A8YY-01 5 38982095 38982095 G A RICTOR Silent p.N209N 0.38 TCGA-2W-A8YY-01 5 39134392 39134393 - T FYB Frame_Shift_Ins p.D589Rfs*11 0.33 TCGA-2W-A8YY-01 5 39202557 39202557 G A FYB Missense_Mutation p.A179V 0.51 tolerated(0.87) benign(0.002) TCGA-2W-A8YY-01 5 39382759 39382759 T C DAB2 Silent p.P434P 0.47 TCGA-2W-A8YY-01 5 39383332 39383332 G A DAB2 Silent p.I243I 0.31 TCGA-2W-A8YY-01 5 39390567 39390567 A - DAB2 Frame_Shift_Del p.F147Lfs*3 0.22 TCGA-2W-A8YY-01 5 40691923 40691923 C T PTGER4 Nonsense_Mutation p.R304* 0.26 TCGA-2W-A8YY-01 5 40692362 40692362 G A PTGER4 Missense_Mutation p.S450N 0.26 tolerated_low_confidence(0.32) benign(0.004) TCGA-2W-A8YY-01 5 40693348 40693348 C T PTGER4 3'UTR 0.53 TCGA-2W-A8YY-01 5 40760291 40760291 C A PRKAA1 3'Flank 0.32 TCGA-2W-A8YY-01 5 40764859 40764859 A G PRKAA1 Missense_Mutation p.W450R 0.20 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 40765211 40765211 T C PRKAA1 Silent p.E332E 0.56 TCGA-2W-A8YY-01 5 40955652 40955652 A G C7 Silent p.Q419Q 0.36 TCGA-2W-A8YY-01 5 41033193 41033193 C A MROH2B Missense_Mutation p.D771Y 0.37 deleterious(0) benign(0.382) TCGA-2W-A8YY-01 5 41042235 41042235 C T MROH2B Missense_Mutation p.E638K 0.39 deleterious(0.01) benign(0.09) TCGA-2W-A8YY-01 5 41047849 41047849 C T MROH2B Missense_Mutation p.V568I 0.40 tolerated(0.35) benign(0.005) TCGA-2W-A8YY-01 5 41918244 41918244 C A C5orf51 3'UTR 0.09 TCGA-2W-A8YY-01 5 41921061 41921061 C T C5orf51 3'UTR 0.42 TCGA-2W-A8YY-01 5 41929906 41929906 G A FBXO4 Missense_Mutation p.R178Q 0.35 tolerated(0.05) probably_damaging(0.997) TCGA-2W-A8YY-01 5 42721882 42721882 C T GHR 3'UTR 0.27 TCGA-2W-A8YY-01 5 42806949 42806949 C T SEPP1 Intron 0.41 TCGA-2W-A8YY-01 5 43280865 43280865 A C NIM1K 3'UTR 0.24 TCGA-2W-A8YY-01 5 43446412 43446412 G A C5orf28 Missense_Mutation p.S187F 0.38 tolerated(0.19) benign(0.361) TCGA-2W-A8YY-01 5 43644392 43644392 G A NNT Missense_Mutation p.E355K 0.28 deleterious(0.02) possibly_damaging(0.702) TCGA-2W-A8YY-01 5 442374 442374 A G C5orf55 3'UTR 0.29 TCGA-2W-A8YY-01 5 45259912 45259912 C A HCN1 3'UTR 0.43 TCGA-2W-A8YY-01 5 45261591 45261591 G A HCN1 3'UTR 0.27 TCGA-2W-A8YY-01 5 45261714 45261714 G T HCN1 3'UTR 0.11 TCGA-2W-A8YY-01 5 45261991 45261991 G T HCN1 3'UTR 0.10 TCGA-2W-A8YY-01 5 45303766 45303766 C T HCN1 Missense_Mutation p.G518D 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 465234 465234 G A EXOC3 Silent p.T595T 0.30 TCGA-2W-A8YY-01 5 467138 467138 C T EXOC3 3'UTR 0.28 TCGA-2W-A8YY-01 5 482769 482769 G A SLC9A3 Missense_Mutation p.A417V 0.46 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 5 50680461 50680461 C T ISL1 Missense_Mutation p.H39Y 0.39 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 5 50685549 50685549 G A ISL1 Missense_Mutation p.R183H 0.37 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 5 50685555 50685555 G A ISL1 Missense_Mutation p.R185Q 0.40 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 5 50685698 50685698 C T ISL1 Missense_Mutation p.R233W 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 50689995 50689995 C T ISL1 3'UTR 0.28 TCGA-2W-A8YY-01 5 52097534 52097534 G A PELO Missense_Mutation p.A340T 0.22 deleterious(0.01) benign(0.006) TCGA-2W-A8YY-01 5 52160675 52160675 G A ITGA1 Missense_Mutation p.G125E 0.35 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 5 52206093 52206093 C T ITGA1 Silent p.C567C 0.42 TCGA-2W-A8YY-01 5 52240815 52240815 C T ITGA1 Missense_Mutation p.R1110W 0.17 deleterious(0.01) benign(0.339) TCGA-2W-A8YY-01 5 52243267 52243267 G A ITGA1 Missense_Mutation p.M1157I 0.13 tolerated(0.14) benign(0.027) TCGA-2W-A8YY-01 5 52356784 52356784 G A ITGA2 Missense_Mutation p.A456T 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 5 52386351 52386351 C T ITGA2 Silent p.L1156L 0.35 TCGA-2W-A8YY-01 5 5239311 5239311 C T ADAMTS16 Silent p.V734V 0.31 TCGA-2W-A8YY-01 5 5303423 5303423 C T ADAMTS16 Silent p.G944G 0.42 TCGA-2W-A8YY-01 5 5306646 5306646 G A ADAMTS16 Silent p.Q1072Q 0.38 TCGA-2W-A8YY-01 5 53606317 53606317 C T ARL15 5'UTR 0.35 TCGA-2W-A8YY-01 5 53751631 53751631 C T HSPB3 Silent p.I4I 0.14 TCGA-2W-A8YY-01 5 53814447 53814447 C T SNX18 Missense_Mutation p.S222L 0.40 tolerated(0.22) benign(0.225) TCGA-2W-A8YY-01 5 53815070 53815070 G A SNX18 Missense_Mutation p.G430S 0.48 tolerated(0.4) possibly_damaging(0.831) TCGA-2W-A8YY-01 5 53815709 53815709 T C SNX18 3'UTR 0.38 TCGA-2W-A8YY-01 5 54405931 54405931 C T GZMA Missense_Mutation p.P237L 0.46 tolerated(0.11) possibly_damaging(0.835) TCGA-2W-A8YY-01 5 54424368 54424368 C T CDC20B Missense_Mutation p.E259K 0.29 tolerated(0.22) benign(0.004) TCGA-2W-A8YY-01 5 54516600 54516600 G A MCIDAS Missense_Mutation p.A251V 0.16 tolerated(0.32) benign(0.016) TCGA-2W-A8YY-01 5 54528357 54528357 G T CCNO Silent p.R133R 0.20 TCGA-2W-A8YY-01 5 54552245 54552245 C T DHX29 3'UTR 0.48 TCGA-2W-A8YY-01 5 54566499 54566499 T C DHX29 Missense_Mutation p.E967G 0.13 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 5 54569145 54569145 T C DHX29 Silent p.T917T 0.26 TCGA-2W-A8YY-01 5 54570772 54570772 G A DHX29 Missense_Mutation p.R832C 0.11 deleterious(0) probably_damaging(0.911) TCGA-2W-A8YY-01 5 54572183 54572184 - T DHX29 Frame_Shift_Ins p.D780Rfs*18 0.10 TCGA-2W-A8YY-01 5 5461609 5461609 G A KIAA0947 Missense_Mutation p.S721N 0.23 tolerated(0.42) benign(0.005) TCGA-2W-A8YY-01 5 5462135 5462135 C T KIAA0947 Silent p.T896T 0.17 TCGA-2W-A8YY-01 5 5463629 5463629 T A KIAA0947 Missense_Mutation p.F1394L 0.35 tolerated(0.53) benign(0.047) TCGA-2W-A8YY-01 5 54649069 54649069 G A SKIV2L2 Missense_Mutation p.R502H 0.31 deleterious(0) probably_damaging(0.957) TCGA-2W-A8YY-01 5 54720837 54720837 T G PPAP2A 3'UTR 0.39 TCGA-2W-A8YY-01 5 54929609 54929609 C T SLC38A9 Missense_Mutation p.G468D 0.40 tolerated(0.2) benign(0.247) TCGA-2W-A8YY-01 5 55111191 55111191 C T DDX4 Silent p.Y679Y 0.42 TCGA-2W-A8YY-01 5 55250652 55250652 C T IL6ST Missense_Mutation p.R479H 0.58 tolerated(0.14) benign(0.001) TCGA-2W-A8YY-01 5 55466576 55466576 G A ANKRD55 Missense_Mutation p.P123S 0.39 tolerated(0.14) probably_damaging(1) TCGA-2W-A8YY-01 5 56215678 56215678 C T MIER3 3'UTR 0.13 TCGA-2W-A8YY-01 5 56218976 56218976 G A MIER3 Silent p.H543H 0.36 TCGA-2W-A8YY-01 5 56777838 56777838 C T ACTBL2 Missense_Mutation p.A233T 0.24 tolerated_low_confidence(0.34) possibly_damaging(0.798) TCGA-2W-A8YY-01 5 57749987 57749987 C T PLK2 3'UTR 0.35 TCGA-2W-A8YY-01 5 57790953 57790953 G A GAPT 3'UTR 0.44 TCGA-2W-A8YY-01 5 57791285 57791286 - A GAPT 3'UTR 0.32 TCGA-2W-A8YY-01 5 58147071 58147071 G A RAB3C Missense_Mutation p.D193N 0.39 tolerated(0.34) benign(0.004) TCGA-2W-A8YY-01 5 58267407 58267407 C T PDE4D 3'UTR 0.18 TCGA-2W-A8YY-01 5 58268245 58268245 G T PDE4D 3'UTR 0.28 TCGA-2W-A8YY-01 5 58285675 58285675 G A PDE4D Silent p.D453D 0.32 TCGA-2W-A8YY-01 5 59189433 59189433 C T PDE4D Missense_Mutation p.S6N 0.44 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 5 60189287 60189287 C T ERCC8 Intron 0.37 TCGA-2W-A8YY-01 5 60455054 60455054 C A SMIM15 3'UTR 0.42 TCGA-2W-A8YY-01 5 60768625 60768625 G A ZSWIM6 Missense_Mutation p.G265E 0.29 tolerated(0.11) benign(0.12) TCGA-2W-A8YY-01 5 60817192 60817223 CATGGGAAGATGGAAATCATGGCAGTGAATTA - ZSWIM6 Frame_Shift_Del p.W480Qfs*39 0.24 TCGA-2W-A8YY-01 5 61681792 61681792 G A KIF2A 3'Flank 0.39 TCGA-2W-A8YY-01 5 61733216 61733216 C T IPO11 Missense_Mutation p.T77I 0.40 tolerated(0.13) benign(0.019) TCGA-2W-A8YY-01 5 61785985 61785985 T C IPO11 Silent p.S507S 0.41 TCGA-2W-A8YY-01 5 61847115 61847115 T - IPO11 Frame_Shift_Del p.S847Lfs*22 0.35 TCGA-2W-A8YY-01 5 61875509 61875509 G A LRRC70 Missense_Mutation p.G82R 0.38 tolerated(0.15) probably_damaging(0.999) TCGA-2W-A8YY-01 5 61876448 61876448 G T LRRC70 Missense_Mutation p.A395S 0.49 tolerated(0.55) benign(0.009) TCGA-2W-A8YY-01 5 63256400 63256400 C T HTR1A Missense_Mutation p.A383T 0.47 deleterious(0.03) probably_damaging(0.959) TCGA-2W-A8YY-01 5 63256682 63256682 C T HTR1A Missense_Mutation p.A289T 0.35 tolerated(0.59) benign(0.008) TCGA-2W-A8YY-01 5 637837 637837 G T CEP72 Missense_Mutation p.Q370H 0.50 tolerated(0.13) benign(0.016) TCGA-2W-A8YY-01 5 637843 637843 C T CEP72 Silent p.S372S 0.45 TCGA-2W-A8YY-01 5 6378600 6378600 C T MED10 5'UTR 0.09 TCGA-2W-A8YY-01 5 63906086 63906086 G A RGS7BP 3'UTR 0.18 TCGA-2W-A8YY-01 5 64079697 64079697 G T CWC27 Missense_Mutation p.R96I 0.30 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 64466449 64466449 G T ADAMTS6 Missense_Mutation p.T1080N 0.11 tolerated(0.16) benign(0) TCGA-2W-A8YY-01 5 64961763 64961763 T A TRAPPC13 3'Flank 0.24 TCGA-2W-A8YY-01 5 65016597 65016597 C T SGTB Missense_Mutation p.R13H 0.38 tolerated(0.07) benign(0.004) TCGA-2W-A8YY-01 5 65058880 65058880 T G NLN Missense_Mutation p.F132C 0.38 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 5 65105928 65105928 G A NLN Silent p.S593S 0.32 TCGA-2W-A8YY-01 5 65475984 65475984 G A SREK1 3'UTR 0.43 TCGA-2W-A8YY-01 5 6600176 6600176 C T NSUN2 Missense_Mutation p.A723T 0.30 tolerated(0.19) benign(0.011) TCGA-2W-A8YY-01 5 6632086 6632086 C T NSUN2 Missense_Mutation p.A87T 0.38 deleterious(0.04) possibly_damaging(0.905) TCGA-2W-A8YY-01 5 66389990 66389990 A G MAST4 Intron 0.42 TCGA-2W-A8YY-01 5 66406001 66406001 C T MAST4 Missense_Mutation p.R478C 0.30 probably_damaging(1) TCGA-2W-A8YY-01 5 66460925 66460925 C T MAST4 Missense_Mutation p.S1973L 0.41 benign(0.004) TCGA-2W-A8YY-01 5 66462447 66462447 C T MAST4 Silent p.S2480S 0.43 TCGA-2W-A8YY-01 5 6668428 6668428 G A SRD5A1 3'UTR 0.13 TCGA-2W-A8YY-01 5 6751178 6751178 G A PAPD7 Silent p.T379T 0.42 TCGA-2W-A8YY-01 5 6753110 6753110 C T PAPD7 Missense_Mutation p.A465V 0.34 tolerated_low_confidence(0.12) benign(0.098) TCGA-2W-A8YY-01 5 6756446 6756446 A C PAPD7 3'UTR 0.45 TCGA-2W-A8YY-01 5 67575529 67575529 C T PIK3R1 Missense_Mutation p.A201V 0.45 tolerated(0.29) benign(0.003) TCGA-2W-A8YY-01 5 68498798 68498798 G A CENPH Splice_Site p.X163_splice 0.29 TCGA-2W-A8YY-01 5 68565120 68565120 G A CDK7 Silent p.P238P 0.39 TCGA-2W-A8YY-01 5 68568803 68568803 G A CDK7 Missense_Mutation p.D267N 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 68661571 68661571 C T TAF9 5'UTR 0.09 TCGA-2W-A8YY-01 5 68680690 68680690 C T RAD17 Missense_Mutation p.A203V 0.46 tolerated(0.07) probably_damaging(0.998) TCGA-2W-A8YY-01 5 68728786 68728786 C T MARVELD2 Missense_Mutation p.R457C 0.36 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 5 68737374 68737375 - A MARVELD2 Frame_Shift_Ins p.E527Rfs*4 0.23 TCGA-2W-A8YY-01 5 68860988 68860988 G A GTF2H2C Missense_Mutation p.R10Q 0.41 tolerated(0.07) benign(0.081) TCGA-2W-A8YY-01 5 68868283 68868283 A C GTF2H2C Missense_Mutation p.K126Q 0.38 tolerated(0.12) benign(0.036) TCGA-2W-A8YY-01 5 68875686 68875686 G A GTF2H2C Missense_Mutation p.R251H 0.09 tolerated(0.15) benign(0.036) TCGA-2W-A8YY-01 5 70757648 70757648 A G BDP1 Missense_Mutation p.Q165R 0.43 tolerated(0.06) probably_damaging(0.997) TCGA-2W-A8YY-01 5 70759902 70759902 A C BDP1 Missense_Mutation p.E206A 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 70805760 70805760 T C BDP1 Silent p.V947V 0.24 TCGA-2W-A8YY-01 5 70808168 70808168 C A BDP1 Missense_Mutation p.S1387Y 0.38 deleterious(0.05) probably_damaging(0.971) TCGA-2W-A8YY-01 5 70858270 70858270 C T BDP1 Nonsense_Mutation p.R2556* 0.44 TCGA-2W-A8YY-01 5 71491061 71491061 G T MAP1B Missense_Mutation p.D627Y 0.35 unknown(0) TCGA-2W-A8YY-01 5 72204931 72204931 A G TNPO1 3'UTR 0.31 TCGA-2W-A8YY-01 5 72207520 72207520 C T TNPO1 3'UTR 0.43 TCGA-2W-A8YY-01 5 72207705 72207705 A G TNPO1 3'UTR 0.27 TCGA-2W-A8YY-01 5 72351906 72351906 A G FCHO2 Missense_Mutation p.K409E 0.24 tolerated(0.16) benign(0.011) TCGA-2W-A8YY-01 5 72377610 72377610 G A FCHO2 Missense_Mutation p.V661I 0.52 tolerated(0.24) probably_damaging(0.997) TCGA-2W-A8YY-01 5 72384332 72384332 A G FCHO2 3'UTR 0.29 TCGA-2W-A8YY-01 5 72384559 72384559 C T FCHO2 3'UTR 0.42 TCGA-2W-A8YY-01 5 72385406 72385406 C T FCHO2 3'UTR 0.37 TCGA-2W-A8YY-01 5 72386247 72386247 C T FCHO2 3'UTR 0.25 TCGA-2W-A8YY-01 5 72794533 72794533 G A BTF3 Missense_Mutation p.G14E 0.41 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-2W-A8YY-01 5 73142115 73142115 G A ARHGEF28 Missense_Mutation p.A484T 0.38 deleterious(0.03) possibly_damaging(0.777) TCGA-2W-A8YY-01 5 73179699 73179699 G T ARHGEF28 Missense_Mutation p.Q1015H 0.11 tolerated(0.1) benign(0.417) TCGA-2W-A8YY-01 5 73181709 73181709 G A ARHGEF28 Silent p.A1030A 0.34 TCGA-2W-A8YY-01 5 73931903 73931903 A G ENC1 Silent p.C136C 0.42 TCGA-2W-A8YY-01 5 74001139 74001139 C T HEXB Silent p.S255S 0.12 TCGA-2W-A8YY-01 5 74077616 74077616 G A FAM169A Missense_Mutation p.S561F 0.13 deleterious(0.01) possibly_damaging(0.691) TCGA-2W-A8YY-01 5 7414880 7414880 C T ADCY2 Silent p.D135D 0.42 TCGA-2W-A8YY-01 5 74491955 74491955 G A ANKRD31 Missense_Mutation p.T173I 0.48 tolerated(0.39) benign(0.009) TCGA-2W-A8YY-01 5 74652209 74652209 G A HMGCR Missense_Mutation p.R641H 0.44 deleterious(0.01) possibly_damaging(0.867) TCGA-2W-A8YY-01 5 74656112 74656112 G A HMGCR Splice_Site p.X871_splice 0.41 TCGA-2W-A8YY-01 5 74657011 74657011 G A HMGCR 3'UTR 0.43 TCGA-2W-A8YY-01 5 74807600 74807600 T C COL4A3BP Missense_Mutation p.T24A 0.39 tolerated_low_confidence(0.27) unknown(0) TCGA-2W-A8YY-01 5 74893763 74893763 G T POLK Nonsense_Mutation p.G845* 0.24 TCGA-2W-A8YY-01 5 74951923 74951923 G A ANKDD1B Missense_Mutation p.A323T 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 5 75581008 75581008 C T SV2C Missense_Mutation p.S312L 0.26 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 5 75906929 75906929 C T IQGAP2 Missense_Mutation p.A481V 0.34 tolerated(0.06) benign(0.056) TCGA-2W-A8YY-01 5 75913317 75913317 C T F2RL2 3'UTR 0.26 TCGA-2W-A8YY-01 5 75970326 75970326 C T IQGAP2 Missense_Mutation p.R1107W 0.11 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 76344776 76344776 A G AGGF1 Silent p.E443E 0.40 TCGA-2W-A8YY-01 5 76359580 76359580 G T AGGF1 3'UTR 0.40 TCGA-2W-A8YY-01 5 76721591 76721591 G A PDE8B Splice_Site p.X807_splice 0.24 TCGA-2W-A8YY-01 5 76729070 76729070 C T WDR41 Missense_Mutation p.A424T 0.26 tolerated(0.35) probably_damaging(0.975) TCGA-2W-A8YY-01 5 76734065 76734065 C A WDR41 Missense_Mutation p.R335M 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-2W-A8YY-01 5 76749687 76749687 G A WDR41 Nonsense_Mutation p.R160* 0.42 TCGA-2W-A8YY-01 5 76749736 76749736 C A WDR41 Missense_Mutation p.Q143H 0.30 deleterious(0.03) benign(0.012) TCGA-2W-A8YY-01 5 76759040 76759040 T - WDR41 Frame_Shift_Del p.K76Nfs*3 0.23 TCGA-2W-A8YY-01 5 7698457 7698457 A G ADCY2 Missense_Mutation p.K360R 0.28 tolerated(0.12) possibly_damaging(0.494) TCGA-2W-A8YY-01 5 7706896 7706896 C T ADCY2 Silent p.R383R 0.41 TCGA-2W-A8YY-01 5 77298763 77298763 A G AP3B1 Missense_Mutation p.L1083P 0.26 deleterious(0) possibly_damaging(0.766) TCGA-2W-A8YY-01 5 77385251 77385251 C T AP3B1 Missense_Mutation p.G848D 0.41 deleterious(0.03) probably_damaging(0.931) TCGA-2W-A8YY-01 5 7804709 7804709 G A ADCY2 Silent p.K929K 0.10 TCGA-2W-A8YY-01 5 7829588 7829588 C T ADCY2 3'UTR 0.38 TCGA-2W-A8YY-01 5 78610405 78610405 C A JMY Missense_Mutation p.S797Y 0.33 tolerated(0.07) possibly_damaging(0.648) TCGA-2W-A8YY-01 5 7861347 7861347 C A FASTKD3 Missense_Mutation p.R600M 0.29 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 7878114 7878114 T G MTRR Missense_Mutation p.H180Q 0.44 tolerated(0.57) benign(0.007) TCGA-2W-A8YY-01 5 7889319 7889319 G A MTRR Missense_Mutation p.A447T 0.48 tolerated(0.2) possibly_damaging(0.527) TCGA-2W-A8YY-01 5 78952780 78952780 G A PAPD4 Splice_Site p.X343_splice 0.31 TCGA-2W-A8YY-01 5 78981859 78981859 C T PAPD4 3'UTR 0.34 TCGA-2W-A8YY-01 5 79029855 79029855 G A CMYA5 Missense_Mutation p.S1756N 0.29 benign(0.001) TCGA-2W-A8YY-01 5 79030050 79030050 A - CMYA5 Frame_Shift_Del p.K1823Rfs*17 0.24 TCGA-2W-A8YY-01 5 79089271 79089271 T C CMYA5 Missense_Mutation p.V3934A 0.29 probably_damaging(0.993) TCGA-2W-A8YY-01 5 79378360 79378360 G A THBS4 Missense_Mutation p.R939H 0.43 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 5 79470847 79470847 C T SERINC5 Missense_Mutation p.G161R 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-2W-A8YY-01 5 79730036 79730036 G A ZFYVE16 Missense_Mutation p.D24N 0.36 deleterious(0) possibly_damaging(0.848) TCGA-2W-A8YY-01 5 79744117 79744117 G A ZFYVE16 Silent p.R999R 0.45 TCGA-2W-A8YY-01 5 80021351 80021351 G T MSH3 Nonsense_Mutation p.E474* 0.30 TCGA-2W-A8YY-01 5 80376610 80376610 T C RASGRF2 Splice_Site p.X387_splice 0.40 TCGA-2W-A8YY-01 5 80546986 80546986 G A CKMT2 Missense_Mutation p.R12H 0.40 deleterious_low_confidence(0.03) benign(0.014) TCGA-2W-A8YY-01 5 80640745 80640745 G A ACOT12 Missense_Mutation p.L297F 0.11 tolerated(0.7) benign(0.013) TCGA-2W-A8YY-01 5 82400810 82400810 G T XRCC4 Missense_Mutation p.W24C 0.27 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 5 825367 825367 C T ZDHHC11 Splice_Site p.X312_splice 0.44 TCGA-2W-A8YY-01 5 82789733 82789733 A G VCAN Missense_Mutation p.Y244C 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 82816723 82816723 G T VCAN Missense_Mutation p.E866D 0.42 tolerated(0.12) possibly_damaging(0.601) TCGA-2W-A8YY-01 5 82833248 82833248 T C VCAN Missense_Mutation p.S1476P 0.24 tolerated(0.14) possibly_damaging(0.73) TCGA-2W-A8YY-01 5 82833623 82833623 G C VCAN Missense_Mutation p.V1601L 0.24 tolerated(0.15) benign(0.02) TCGA-2W-A8YY-01 5 82835515 82835515 A C VCAN Missense_Mutation p.E2231D 0.35 deleterious(0.05) benign(0.118) TCGA-2W-A8YY-01 5 82836875 82836875 G A VCAN Missense_Mutation p.V2685I 0.41 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 5 82838030 82838030 G A VCAN Missense_Mutation p.D3070N 0.32 tolerated(0.23) benign(0.147) TCGA-2W-A8YY-01 5 82850776 82850776 T C VCAN Silent p.R3218R 0.32 TCGA-2W-A8YY-01 5 86627206 86627206 G A RASA1 Missense_Mutation p.R194H 0.36 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 5 86670117 86670117 G A RASA1 Nonsense_Mutation p.W638* 0.33 TCGA-2W-A8YY-01 5 86672759 86672759 G A RASA1 Missense_Mutation p.R749Q 0.37 deleterious(0.01) probably_damaging(0.912) TCGA-2W-A8YY-01 5 86687002 86687002 G A RASA1 3'Flank 0.38 TCGA-2W-A8YY-01 5 87493500 87493500 A G TMEM161B Missense_Mutation p.L391P 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 87524302 87524302 G T TMEM161B Missense_Mutation p.L51I 0.39 deleterious(0.01) probably_damaging(0.937) TCGA-2W-A8YY-01 5 88017592 88017592 C T MEF2C 3'UTR 0.40 TCGA-2W-A8YY-01 5 89925279 89925280 - A GPR98 Frame_Shift_Ins p.T590Nfs*12 0.37 TCGA-2W-A8YY-01 5 89949519 89949519 C T GPR98 Silent p.D1376D 0.43 TCGA-2W-A8YY-01 5 89968629 89968629 G A GPR98 Intron 0.48 TCGA-2W-A8YY-01 5 90073841 90073841 C T GPR98 Missense_Mutation p.A4216V 0.35 possibly_damaging(0.739) TCGA-2W-A8YY-01 5 90084008 90084008 A G GPR98 Missense_Mutation p.I4592V 0.38 possibly_damaging(0.456) TCGA-2W-A8YY-01 5 90106143 90106143 G A GPR98 Missense_Mutation p.M5022I 0.40 benign(0) TCGA-2W-A8YY-01 5 90106349 90106349 A G GPR98 Missense_Mutation p.Y5091C 0.38 probably_damaging(0.98) TCGA-2W-A8YY-01 5 90136787 90136787 G A GPR98 Missense_Mutation p.M5668I 0.30 benign(0.107) TCGA-2W-A8YY-01 5 90368320 90368320 C T GPR98 Missense_Mutation p.T6070M 0.31 benign(0) TCGA-2W-A8YY-01 5 9197320 9197320 G A SEMA5A Missense_Mutation p.S343L 0.54 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 5 92919677 92919677 T G NR2F1 5'UTR 0.11 TCGA-2W-A8YY-01 5 92923997 92923997 G A NR2F1 Missense_Mutation p.A280T 0.41 tolerated(0.08) benign(0.136) TCGA-2W-A8YY-01 5 93489812 93489812 T A KIAA0825 Missense_Mutation p.D1243V 0.46 deleterious(0.03) benign(0.29) TCGA-2W-A8YY-01 5 93752956 93752956 A G KIAA0825 Missense_Mutation p.V871A 0.29 tolerated(0.39) benign(0.228) TCGA-2W-A8YY-01 5 94031094 94031094 C T ANKRD32 3'UTR 0.32 TCGA-2W-A8YY-01 5 94046595 94046595 C T MCTP1 Missense_Mutation p.A920T 0.09 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 5 94050495 94050495 C T MCTP1 Missense_Mutation p.E903K 0.47 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 5 94207025 94207025 G A MCTP1 Silent p.L712L 0.39 TCGA-2W-A8YY-01 5 94230372 94230372 C A MCTP1 Missense_Mutation p.E607D 0.46 tolerated(0.43) benign(0.179) TCGA-2W-A8YY-01 5 94278063 94278063 C T MCTP1 Silent p.L350L 0.34 TCGA-2W-A8YY-01 5 94288977 94288977 C T MCTP1 Nonsense_Mutation p.W309* 0.32 TCGA-2W-A8YY-01 5 94859531 94859531 C A TTC37 Missense_Mutation p.R487I 0.32 deleterious(0) possibly_damaging(0.629) TCGA-2W-A8YY-01 5 94918857 94918857 T A ARSK Missense_Mutation p.N218K 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.906) TCGA-2W-A8YY-01 5 94927235 94927235 A G ARSK Silent p.A334A 0.31 TCGA-2W-A8YY-01 5 94989936 94989936 T C RFESD Silent p.C110C 0.42 TCGA-2W-A8YY-01 5 94994441 94994441 C T SPATA9 Silent p.P217P 0.12 TCGA-2W-A8YY-01 5 95242439 95242439 C A ELL2 Missense_Mutation p.V177F 0.08 deleterious(0) probably_damaging(0.93) TCGA-2W-A8YY-01 5 95726688 95726688 G - PCSK1 3'UTR 0.34 TCGA-2W-A8YY-01 5 96065411 96065411 G T CAST Missense_Mutation p.E136D 0.60 tolerated(0.09) possibly_damaging(0.769) TCGA-2W-A8YY-01 5 96109820 96109820 C A CAST 3'UTR 0.23 TCGA-2W-A8YY-01 5 96117497 96117497 C A ERAP1 Missense_Mutation p.D783Y 0.34 deleterious(0) possibly_damaging(0.816) TCGA-2W-A8YY-01 5 96139206 96139206 C T ERAP1 Missense_Mutation p.G142R 0.35 deleterious(0) possibly_damaging(0.897) TCGA-2W-A8YY-01 5 96232180 96232180 A C ERAP2 Missense_Mutation p.E448A 0.37 deleterious(0.01) probably_damaging(0.984) TCGA-2W-A8YY-01 5 9630327 9630327 G T TAS2R1 5'UTR 0.43 TCGA-2W-A8YY-01 5 96314919 96314919 G T LNPEP Nonsense_Mutation p.E33* 0.31 TCGA-2W-A8YY-01 5 96315400 96315400 C A LNPEP Missense_Mutation p.S193Y 0.10 tolerated(0.28) possibly_damaging(0.806) TCGA-2W-A8YY-01 5 96328816 96328816 T C LNPEP Missense_Mutation p.I410T 0.51 deleterious(0) possibly_damaging(0.864) TCGA-2W-A8YY-01 5 96503239 96503239 G A RIOK2 Silent p.D443D 0.41 TCGA-2W-A8YY-01 5 98212140 98212140 C A CHD1 Silent p.R1120R 0.24 TCGA-2W-A8YY-01 5 98215332 98215332 C T CHD1 Missense_Mutation p.R1054Q 0.40 tolerated(0.06) benign(0.056) TCGA-2W-A8YY-01 5 98217814 98217814 C T CHD1 Missense_Mutation p.R911H 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 5 98223934 98223934 C T CHD1 Missense_Mutation p.R785H 0.25 deleterious(0) probably_damaging(0.983) TCGA-2W-A8YY-01 5 98232092 98232092 C T CHD1 Silent p.T516T 0.44 TCGA-2W-A8YY-01 5 98236699 98236699 A G CHD1 Silent p.Y225Y 0.44 TCGA-2W-A8YY-01 6 100006219 100006219 T G CCNC Intron 0.28 TCGA-2W-A8YY-01 6 100054877 100054877 G T PRDM13 5'UTR 0.53 TCGA-2W-A8YY-01 6 100838735 100838735 T C SIM1 Silent p.K601K 0.34 TCGA-2W-A8YY-01 6 100841608 100841608 C T SIM1 Missense_Mutation p.R442H 0.30 tolerated(0.1) possibly_damaging(0.778) TCGA-2W-A8YY-01 6 100898158 100898158 G T SIM1 Missense_Mutation p.H111Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 100965918 100965918 G T ASCC3 Missense_Mutation p.S1959Y 0.38 deleterious(0.01) probably_damaging(0.981) TCGA-2W-A8YY-01 6 102516476 102516476 C T GRIK2 3'UTR 0.36 TCGA-2W-A8YY-01 6 10509369 10509369 C A RP11-360O19.4 3'Flank 0.38 TCGA-2W-A8YY-01 6 105232317 105232317 C T HACE1 Missense_Mutation p.E485K 0.40 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 6 105530466 105530466 C T LIN28B 3'UTR 0.24 TCGA-2W-A8YY-01 6 105548935 105548935 C T BVES 3'UTR 0.25 TCGA-2W-A8YY-01 6 105563610 105563610 G A BVES Silent p.D303D 0.35 TCGA-2W-A8YY-01 6 105573307 105573307 T G BVES Missense_Mutation p.K166N 0.29 tolerated(0.14) benign(0.37) TCGA-2W-A8YY-01 6 105726115 105726115 G A PREP Silent p.G679G 0.32 TCGA-2W-A8YY-01 6 105730422 105730422 C T PREP Missense_Mutation p.D529N 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 106553178 106553178 C T PRDM1 Silent p.Y381Y 0.41 TCGA-2W-A8YY-01 6 106553648 106553648 T C PRDM1 Missense_Mutation p.M538T 0.29 tolerated(0.65) benign(0.028) TCGA-2W-A8YY-01 6 106554834 106554834 C T PRDM1 Nonsense_Mutation p.R651* 0.15 TCGA-2W-A8YY-01 6 106633358 106633358 T C ATG5 3'UTR 0.27 TCGA-2W-A8YY-01 6 106633835 106633835 C A ATG5 3'UTR 0.25 TCGA-2W-A8YY-01 6 106763974 106763974 A G ATG5 Splice_Site p.X36_splice 0.19 TCGA-2W-A8YY-01 6 10703677 10703677 A G PAK1IP1 Silent p.K161K 0.49 TCGA-2W-A8YY-01 6 10728939 10728939 C T TMEM14C Missense_Mutation p.A89V 0.46 tolerated(0.15) benign(0.209) TCGA-2W-A8YY-01 6 107390423 107390423 G A BEND3 Missense_Mutation p.R658C 0.44 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 6 107391081 107391081 A G BEND3 Silent p.G438G 0.46 TCGA-2W-A8YY-01 6 107955694 107955694 C T SOBP Missense_Mutation p.S549F 0.43 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 6 107980649 107980649 G A SOBP 3'UTR 0.11 TCGA-2W-A8YY-01 6 108066288 108066288 C T SCML4 Missense_Mutation p.G183S 0.46 tolerated(0.74) benign(0.019) TCGA-2W-A8YY-01 6 108230148 108230148 C T SEC63 Missense_Mutation p.R239Q 0.31 tolerated(0.08) benign(0.067) TCGA-2W-A8YY-01 6 108478612 108478612 G A OSTM1-AS1 RNA 0.47 TCGA-2W-A8YY-01 6 108492700 108492700 C T NR2E1 Missense_Mutation p.R22C 0.39 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 6 108497868 108497868 G A NR2E1 Missense_Mutation p.G141S 0.54 tolerated(0.8) benign(0) TCGA-2W-A8YY-01 6 108668238 108668238 A G LACE1 Missense_Mutation p.D137G 0.33 tolerated(0.21) benign(0.071) TCGA-2W-A8YY-01 6 108687502 108687502 C T LACE1 Silent p.V238V 0.41 TCGA-2W-A8YY-01 6 108831514 108831514 C T LACE1 Nonsense_Mutation p.R388* 0.45 TCGA-2W-A8YY-01 6 10898277 10898277 C T SYCP2L Silent p.L124L 0.42 TCGA-2W-A8YY-01 6 108984943 108984943 C A FOXO3 Missense_Mutation p.L303M 0.41 tolerated(0.05) benign(0.025) TCGA-2W-A8YY-01 6 108985192 108985192 C A FOXO3 Missense_Mutation p.L386I 0.10 tolerated(0.18) benign(0.012) TCGA-2W-A8YY-01 6 109005201 109005201 A G FOXO3 3'UTR 0.14 TCGA-2W-A8YY-01 6 109274278 109274278 G A ARMC2 Missense_Mutation p.A547T 0.39 deleterious(0) probably_damaging(0.938) TCGA-2W-A8YY-01 6 109274522 109274522 C T ARMC2 Missense_Mutation p.P628L 0.50 tolerated(0.26) benign(0.129) TCGA-2W-A8YY-01 6 109311888 109311888 G A SESN1 Missense_Mutation p.R462W 0.38 deleterious(0.02) benign(0.123) TCGA-2W-A8YY-01 6 109484117 109484117 C T CEP57L1 Nonsense_Mutation p.R443* 0.51 TCGA-2W-A8YY-01 6 109578753 109578753 G A C6orf183 RNA 0.13 TCGA-2W-A8YY-01 6 109578895 109578895 G A C6orf183 RNA 0.29 TCGA-2W-A8YY-01 6 109586053 109586053 T C C6orf183 RNA 0.47 TCGA-2W-A8YY-01 6 109689537 109689538 - A CD164 3'UTR 0.29 TCGA-2W-A8YY-01 6 109713952 109713952 G A PPIL6 3'UTR 0.60 TCGA-2W-A8YY-01 6 109721366 109721366 G T PPIL6 Missense_Mutation p.N258K 0.41 deleterious(0.01) probably_damaging(0.955) TCGA-2W-A8YY-01 6 109787477 109787477 G A ZBTB24 Silent p.T557T 0.35 TCGA-2W-A8YY-01 6 109787516 109787516 G T ZBTB24 Silent p.L544L 0.42 TCGA-2W-A8YY-01 6 109802745 109802745 C T ZBTB24 Missense_Mutation p.R162Q 0.40 deleterious(0.01) probably_damaging(0.988) TCGA-2W-A8YY-01 6 109818714 109818714 G A AK9 Missense_Mutation p.R1757C 0.42 tolerated(0.05) benign(0.072) TCGA-2W-A8YY-01 6 110107594 110107594 C T FIG4 Missense_Mutation p.P680S 0.38 deleterious(0.01) benign(0.314) TCGA-2W-A8YY-01 6 110107611 110107611 C A FIG4 Missense_Mutation p.S685R 0.34 tolerated(0.57) benign(0.027) TCGA-2W-A8YY-01 6 1102176 1102176 C A AL033381.1 Missense_Mutation p.Q54K 0.21 benign(0.095) TCGA-2W-A8YY-01 6 110499810 110499810 C T WASF1 5'UTR 0.40 TCGA-2W-A8YY-01 6 110620213 110620213 C T METTL24 Missense_Mutation p.R233Q 0.35 deleterious(0) probably_damaging(0.915) TCGA-2W-A8YY-01 6 110714482 110714482 C T DDO Silent p.P202P 0.46 TCGA-2W-A8YY-01 6 110935490 110935490 G A CDK19 3'UTR 0.54 TCGA-2W-A8YY-01 6 110942449 110942449 G A CDK19 Missense_Mutation p.A412V 0.35 tolerated(0.6) benign(0.002) TCGA-2W-A8YY-01 6 111213404 111213404 T C AMD1 Silent p.C156C 0.39 TCGA-2W-A8YY-01 6 111320983 111320983 A G RPF2 Missense_Mutation p.D129G 0.45 deleterious(0.01) possibly_damaging(0.72) TCGA-2W-A8YY-01 6 111345516 111345516 C T RPF2 Missense_Mutation p.P243S 0.42 deleterious(0.01) possibly_damaging(0.901) TCGA-2W-A8YY-01 6 111714077 111714077 A G REV3L Splice_Site p.X221_splice 0.26 TCGA-2W-A8YY-01 6 11190877 11190877 C T NEDD9 Missense_Mutation p.A409T 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 11191042 11191042 C A NEDD9 Missense_Mutation p.D354Y 0.12 deleterious(0) probably_damaging(0.926) TCGA-2W-A8YY-01 6 11193823 11193823 C T NEDD9 Splice_Site p.X187_splice 0.39 TCGA-2W-A8YY-01 6 112389464 112389464 T C WISP3 Missense_Mutation p.W234R 0.50 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 6 112397173 112397173 T C TUBE1 Missense_Mutation p.N260S 0.40 tolerated(0.23) benign(0.034) TCGA-2W-A8YY-01 6 112528333 112528333 T C LAMA4 Missense_Mutation p.N104S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 6 114182995 114182995 T - MARCKS 3'UTR 0.14 TCGA-2W-A8YY-01 6 114225651 114225651 G T RP11-544L8__B.4 RNA 0.31 TCGA-2W-A8YY-01 6 114292254 114292254 G A HDAC2 5'UTR 0.38 TCGA-2W-A8YY-01 6 114378692 114378692 C T HS3ST5 Missense_Mutation p.R257H 0.43 deleterious(0.02) probably_damaging(0.913) TCGA-2W-A8YY-01 6 114379031 114379031 G T HS3ST5 Missense_Mutation p.P144H 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 116277675 116277675 C A FRK Missense_Mutation p.D300Y 0.29 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 6 116277686 116277686 C T FRK Missense_Mutation p.C296Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 116573547 116573547 A G TSPYL4 3'UTR 0.32 TCGA-2W-A8YY-01 6 116575363 116575363 C T NT5DC1 3'Flank 0.45 TCGA-2W-A8YY-01 6 116598527 116598527 G A TSPYL1 3'UTR 0.30 TCGA-2W-A8YY-01 6 116600592 116600592 G A TSPYL1 Silent p.I134I 0.44 TCGA-2W-A8YY-01 6 116600780 116600780 G T TSPYL1 Missense_Mutation p.Q72K 0.40 tolerated(0.41) benign(0.001) TCGA-2W-A8YY-01 6 116757777 116757777 C T DSE Missense_Mutation p.R716C 0.25 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-2W-A8YY-01 6 116914244 116914244 G A RWDD1 Missense_Mutation p.E238K 0.12 tolerated_low_confidence(0.31) unknown(0) TCGA-2W-A8YY-01 6 117037465 117037465 C A KPNA5 Missense_Mutation p.P247H 0.25 deleterious(0.04) probably_damaging(0.963) TCGA-2W-A8YY-01 6 117053463 117053463 C T KPNA5 Missense_Mutation p.P533S 0.45 deleterious(0.05) probably_damaging(0.999) TCGA-2W-A8YY-01 6 117253175 117253175 A G RFX6 3'UTR 0.16 TCGA-2W-A8YY-01 6 117853517 117853517 G A DCBLD1 Missense_Mutation p.R227Q 0.41 tolerated(0.13) benign(0.417) TCGA-2W-A8YY-01 6 117869657 117869657 C T DCBLD1 Intron 0.18 TCGA-2W-A8YY-01 6 117890930 117890930 T C DCBLD1 3'UTR 0.51 TCGA-2W-A8YY-01 6 117890970 117890970 A G DCBLD1 3'UTR 0.38 TCGA-2W-A8YY-01 6 117896488 117896489 - T GOPC Frame_Shift_Ins p.E168Rfs*9 0.35 TCGA-2W-A8YY-01 6 118596759 118596759 T G SLC35F1 Missense_Mutation p.F259V 0.32 tolerated(0.3) benign(0.017) TCGA-2W-A8YY-01 6 118637531 118637531 C A SLC35F1 3'UTR 0.45 TCGA-2W-A8YY-01 6 118786511 118786511 C A CEP85L 3'UTR 0.52 TCGA-2W-A8YY-01 6 118804916 118804916 G A CEP85L Silent p.L518L 0.28 TCGA-2W-A8YY-01 6 118881105 118881105 A G PLN 3'UTR 0.32 TCGA-2W-A8YY-01 6 119137138 119137138 C T MCM9 Missense_Mutation p.V761M 0.33 tolerated_low_confidence(0.09) benign(0.041) TCGA-2W-A8YY-01 6 119232649 119232649 T A MCM9 Intron 0.43 TCGA-2W-A8YY-01 6 119345304 119345304 C A FAM184A Missense_Mutation p.Q278H 0.10 tolerated(0.17) benign(0.003) TCGA-2W-A8YY-01 6 119526021 119526021 G A MAN1A1 Missense_Mutation p.A340V 0.35 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 6 12120269 12120269 G A HIVEP1 Missense_Mutation p.E81K 0.09 tolerated(0.26) benign(0.439) TCGA-2W-A8YY-01 6 12121345 12121345 T C HIVEP1 Silent p.C439C 0.41 TCGA-2W-A8YY-01 6 12122047 12122047 T C HIVEP1 Silent p.S673S 0.44 TCGA-2W-A8YY-01 6 12123531 12123531 C T HIVEP1 Missense_Mutation p.T1168M 0.22 tolerated(0.12) possibly_damaging(0.775) TCGA-2W-A8YY-01 6 12125868 12125868 T C HIVEP1 Missense_Mutation p.L1947P 0.31 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 6 12164022 12164022 C T HIVEP1 Silent p.T2495T 0.35 TCGA-2W-A8YY-01 6 121768112 121768112 C T GJA1 Missense_Mutation p.A40V 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 121770135 121770135 C T GJA1 3'UTR 0.31 TCGA-2W-A8YY-01 6 122743400 122743400 G T HSF2 Missense_Mutation p.V263F 0.32 deleterious(0.03) benign(0.413) TCGA-2W-A8YY-01 6 123130554 123130554 T C SMPDL3A 3'UTR 0.25 TCGA-2W-A8YY-01 6 124443080 124443080 C A NKAIN2 Intron 0.42 TCGA-2W-A8YY-01 6 125284036 125284036 G A RP11-510H23.1 RNA 0.50 TCGA-2W-A8YY-01 6 125369384 125369384 C T RNF217 Intron 0.42 TCGA-2W-A8YY-01 6 125598324 125598324 C T HDDC2 Missense_Mutation p.M147I 0.41 deleterious(0) probably_damaging(0.93) TCGA-2W-A8YY-01 6 126250034 126250034 T G NCOA7 3'UTR 0.29 TCGA-2W-A8YY-01 6 126296086 126296086 G A HINT3 Silent p.L161L 0.35 TCGA-2W-A8YY-01 6 126319743 126319743 G A TRMT11 Silent p.P145P 0.21 TCGA-2W-A8YY-01 6 126332462 126332462 G A TRMT11 Missense_Mutation p.R275H 0.31 tolerated(0.12) benign(0.094) TCGA-2W-A8YY-01 6 127476413 127476413 C A RSPO3 Missense_Mutation p.P155H 0.45 deleterious(0.01) possibly_damaging(0.722) TCGA-2W-A8YY-01 6 127796510 127796510 G T SOGA3 Silent p.T887T 0.31 TCGA-2W-A8YY-01 6 127796526 127796526 C T SOGA3 Missense_Mutation p.R882H 0.30 tolerated(0.06) probably_damaging(0.991) TCGA-2W-A8YY-01 6 127796668 127796668 C T SOGA3 Missense_Mutation p.D835N 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 128320042 128320042 G A PTPRK Silent p.N834N 0.35 TCGA-2W-A8YY-01 6 129470160 129470160 G A LAMA2 Missense_Mutation p.D316N 0.39 deleterious(0.01) possibly_damaging(0.653) TCGA-2W-A8YY-01 6 129486789 129486789 C A LAMA2 Silent p.V425V 0.24 TCGA-2W-A8YY-01 6 129723480 129723480 C T LAMA2 Silent p.D1858D 0.30 TCGA-2W-A8YY-01 6 129813501 129813501 A G LAMA2 Missense_Mutation p.D2706G 0.30 deleterious(0.04) possibly_damaging(0.871) TCGA-2W-A8YY-01 6 129835715 129835715 C A LAMA2 Missense_Mutation p.D3062E 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 6 129937416 129937416 G A ARHGAP18 Silent p.L329L 0.31 TCGA-2W-A8YY-01 6 130399702 130399702 G T L3MBTL3 Splice_Site p.X415_splice 0.38 TCGA-2W-A8YY-01 6 130465642 130465642 C T SAMD3 3'UTR 0.38 TCGA-2W-A8YY-01 6 130763537 130763537 C A TMEM200A 3'UTR 0.19 TCGA-2W-A8YY-01 6 130763632 130763632 T - TMEM200A 3'UTR 0.28 TCGA-2W-A8YY-01 6 131201325 131201325 C T EPB41L2 Missense_Mutation p.G619R 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-2W-A8YY-01 6 131276265 131276265 C T EPB41L2 Missense_Mutation p.E229K 0.14 deleterious(0.03) benign(0.198) TCGA-2W-A8YY-01 6 131540885 131540885 T G AKAP7 Missense_Mutation p.C263G 0.36 deleterious(0.02) probably_damaging(0.978) TCGA-2W-A8YY-01 6 131602868 131602868 C T AKAP7 3'UTR 0.35 TCGA-2W-A8YY-01 6 131603756 131603756 C T AKAP7 3'UTR 0.62 TCGA-2W-A8YY-01 6 132029589 132029589 C A CTAGE9 3'UTR 0.17 TCGA-2W-A8YY-01 6 132181641 132181641 G A ENPP1 Missense_Mutation p.E304K 0.23 deleterious(0) possibly_damaging(0.861) TCGA-2W-A8YY-01 6 132194066 132194066 C T ENPP1 Missense_Mutation p.R481W 0.51 deleterious(0) probably_damaging(0.932) TCGA-2W-A8YY-01 6 132198238 132198238 C T ENPP1 Silent p.P610P 0.36 TCGA-2W-A8YY-01 6 132207788 132207788 C T ENPP1 Missense_Mutation p.T844M 0.39 deleterious(0) probably_damaging(0.911) TCGA-2W-A8YY-01 6 132269891 132269891 G A CTGF 3'UTR 0.41 TCGA-2W-A8YY-01 6 132270441 132270441 G A CTGF Missense_Mutation p.S338L 0.39 tolerated(0.13) possibly_damaging(0.783) TCGA-2W-A8YY-01 6 132618986 132618986 C T MOXD1 Silent p.K539K 0.14 TCGA-2W-A8YY-01 6 132643936 132643936 C T MOXD1 Missense_Mutation p.G396D 0.22 deleterious(0.02) benign(0.072) TCGA-2W-A8YY-01 6 132694040 132694040 G A MOXD1 Missense_Mutation p.R170W 0.35 tolerated(0.06) possibly_damaging(0.724) TCGA-2W-A8YY-01 6 132694058 132694058 T C MOXD1 Missense_Mutation p.R164G 0.10 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 6 132793444 132793444 G T STX7 Missense_Mutation p.L76M 0.26 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 6 13283705 13283705 C T TBC1D7 Intron 0.35 TCGA-2W-A8YY-01 6 132909921 132909921 G A TAAR5 Missense_Mutation p.P302L 0.21 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 6 132966524 132966524 A G TAAR1 Silent p.L207L 0.43 TCGA-2W-A8YY-01 6 133045807 133045807 C T VNN3 3'UTR 0.38 TCGA-2W-A8YY-01 6 133048080 133048080 G T VNN3 Intron 0.43 TCGA-2W-A8YY-01 6 133055517 133055517 T C VNN3 Silent p.A73A 0.43 TCGA-2W-A8YY-01 6 133077134 133077134 C T VNN2 Missense_Mutation p.A129T 0.13 deleterious(0) probably_damaging(0.992) TCGA-2W-A8YY-01 6 133091406 133091406 G A SLC18B1 3'UTR 0.62 TCGA-2W-A8YY-01 6 133846226 133846226 C T EYA4 Intron 0.09 TCGA-2W-A8YY-01 6 134303983 134303983 C T TBPL1 Missense_Mutation p.R83C 0.29 deleterious(0) probably_damaging(0.946) TCGA-2W-A8YY-01 6 13487109 13487109 A G GFOD1 Missense_Mutation p.V5A 0.38 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 6 135317928 135317928 C T HBS1L Missense_Mutation p.E318K 0.35 deleterious(0) benign(0.243) TCGA-2W-A8YY-01 6 135318574 135318574 G A HBS1L Missense_Mutation p.R254W 0.30 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 6 135357740 135357740 C T HBS1L Intron 0.39 TCGA-2W-A8YY-01 6 135507123 135507123 C T MYB Missense_Mutation p.R36C 0.46 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 6 135639719 135639719 G A AHI1 Nonsense_Mutation p.R1122* 0.33 TCGA-2W-A8YY-01 6 135768160 135768160 G A AHI1 Nonsense_Mutation p.R589* 0.30 TCGA-2W-A8YY-01 6 136268632 136268632 G A PDE7B Missense_Mutation p.D18N 0.29 deleterious_low_confidence(0.03) benign(0.157) TCGA-2W-A8YY-01 6 136494965 136494965 C T PDE7B Nonsense_Mutation p.R248* 0.27 TCGA-2W-A8YY-01 6 136560721 136560721 G A MTFR2 Missense_Mutation p.P251L 0.35 tolerated(0.42) benign(0.005) TCGA-2W-A8YY-01 6 136597254 136597254 C A BCLAF1 Missense_Mutation p.R470M 0.11 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-2W-A8YY-01 6 136599501 136599501 G A BCLAF1 Missense_Mutation p.P173L 0.23 tolerated_low_confidence(0.48) possibly_damaging(0.851) TCGA-2W-A8YY-01 6 136698971 136698971 C T MAP7 Missense_Mutation p.V247I 0.49 tolerated(0.75) benign(0.153) TCGA-2W-A8YY-01 6 136980405 136980405 C A MAP3K5 Missense_Mutation p.R493I 0.46 deleterious(0) benign(0.158) TCGA-2W-A8YY-01 6 137191074 137191074 A G PEX7 Missense_Mutation p.D227G 0.41 deleterious(0) possibly_damaging(0.833) TCGA-2W-A8YY-01 6 137482949 137482949 A G IL22RA2 Intron 0.17 TCGA-2W-A8YY-01 6 137528178 137528178 T C IFNGR1 Missense_Mutation p.N41S 0.41 deleterious(0.01) probably_damaging(0.975) TCGA-2W-A8YY-01 6 138576706 138576706 G A KIAA1244 Missense_Mutation p.G302S 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 138582680 138582680 A G KIAA1244 Missense_Mutation p.Q374R 0.42 tolerated(0.26) benign(0.002) TCGA-2W-A8YY-01 6 138607995 138607995 C T KIAA1244 Silent p.D909D 0.19 TCGA-2W-A8YY-01 6 138657564 138657564 C T KIAA1244 Missense_Mutation p.R2159C 0.31 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 138752118 138752118 T C NHSL1 Missense_Mutation p.T1126A 0.39 tolerated(0.08) benign(0.038) TCGA-2W-A8YY-01 6 138753197 138753197 G A NHSL1 Missense_Mutation p.A766V 0.26 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 6 138817508 138817508 G A NHSL1 Missense_Mutation p.A68V 0.49 tolerated(0.08) benign(0.185) TCGA-2W-A8YY-01 6 139202136 139202136 G A ECT2L Missense_Mutation p.V570I 0.44 tolerated(0.29) benign(0.032) TCGA-2W-A8YY-01 6 139237001 139237001 T C REPS1 Missense_Mutation p.T571A 0.46 tolerated(0.64) possibly_damaging(0.607) TCGA-2W-A8YY-01 6 139241384 139241384 G T REPS1 Nonsense_Mutation p.S499* 0.40 TCGA-2W-A8YY-01 6 139355334 139355334 G A ABRACL Missense_Mutation p.E13K 0.46 tolerated(0.41) possibly_damaging(0.453) TCGA-2W-A8YY-01 6 139561296 139561297 - A TXLNB 3'UTR 0.34 TCGA-2W-A8YY-01 6 139563769 139563769 G A TXLNB Missense_Mutation p.P650L 0.38 deleterious_low_confidence(0.03) benign(0.027) TCGA-2W-A8YY-01 6 139609877 139609877 C T TXLNB Missense_Mutation p.D54N 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 139694229 139694229 A G CITED2 3'UTR 0.32 TCGA-2W-A8YY-01 6 13978798 13978799 CC - RNF182 3'UTR 0.31 TCGA-2W-A8YY-01 6 13979445 13979445 T C RNF182 3'UTR 0.43 TCGA-2W-A8YY-01 6 14135653 14135653 T C CD83 3'UTR 0.32 TCGA-2W-A8YY-01 6 142396876 142396876 C T NMBR Missense_Mutation p.R361H 0.29 tolerated(0.09) benign(0.027) TCGA-2W-A8YY-01 6 142519697 142519697 T G VTA1 Missense_Mutation p.I214M 0.21 deleterious(0.03) possibly_damaging(0.882) TCGA-2W-A8YY-01 6 142736153 142736153 C T GPR126 Silent p.V863V 0.44 TCGA-2W-A8YY-01 6 143072960 143072960 G T HIVEP2 3'UTR 0.30 TCGA-2W-A8YY-01 6 143074871 143074871 G A HIVEP2 Silent p.H2238H 0.39 TCGA-2W-A8YY-01 6 143091497 143091497 A C HIVEP2 Missense_Mutation p.V1460G 0.24 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 6 143094456 143094456 G T HIVEP2 Missense_Mutation p.P474T 0.45 tolerated(0.56) benign(0.206) TCGA-2W-A8YY-01 6 143094518 143094518 T - HIVEP2 Frame_Shift_Del p.K453Rfs*3 0.24 TCGA-2W-A8YY-01 6 143095569 143095569 G A HIVEP2 Missense_Mutation p.H103Y 0.34 deleterious(0.01) possibly_damaging(0.61) TCGA-2W-A8YY-01 6 143095610 143095610 G A HIVEP2 Missense_Mutation p.P89L 0.32 deleterious(0.02) benign(0.019) TCGA-2W-A8YY-01 6 143792707 143792707 G A PEX3 Silent p.L179L 0.15 TCGA-2W-A8YY-01 6 143825235 143825235 C T FUCA2 Silent p.P189P 0.38 TCGA-2W-A8YY-01 6 144145094 144145094 C A PHACTR2 3'UTR 0.32 TCGA-2W-A8YY-01 6 144207218 144207218 C T ZC2HC1B Missense_Mutation p.P47L 0.29 tolerated(0.08) benign(0.055) TCGA-2W-A8YY-01 6 144262762 144262762 G T PLAGL1 Silent p.T397T 0.45 TCGA-2W-A8YY-01 6 144263479 144263479 G A PLAGL1 Silent p.C158C 0.09 TCGA-2W-A8YY-01 6 144416334 144416334 C A SF3B5 3'UTR 0.41 TCGA-2W-A8YY-01 6 144416427 144416427 C T SF3B5 Missense_Mutation p.E70K 0.26 tolerated(0.14) benign(0.038) TCGA-2W-A8YY-01 6 144508124 144508124 G A STX11 Silent p.P120P 0.50 TCGA-2W-A8YY-01 6 144508838 144508838 G T STX11 3'UTR 0.33 TCGA-2W-A8YY-01 6 144744744 144744744 G A UTRN Silent p.Q98Q 0.43 TCGA-2W-A8YY-01 6 145115041 145115041 G A UTRN Missense_Mutation p.A2998T 0.47 deleterious(0.01) possibly_damaging(0.794) TCGA-2W-A8YY-01 6 146120966 146120966 A G FBXO30 3'UTR 0.19 TCGA-2W-A8YY-01 6 146239355 146239355 C T SHPRH Missense_Mutation p.R1389Q 0.37 tolerated(0.06) possibly_damaging(0.895) TCGA-2W-A8YY-01 6 146256214 146256214 A T SHPRH Missense_Mutation p.V940E 0.38 tolerated(0.76) benign(0.158) TCGA-2W-A8YY-01 6 146256575 146256575 G T SHPRH Missense_Mutation p.L858I 0.55 deleterious(0.04) possibly_damaging(0.865) TCGA-2W-A8YY-01 6 146264758 146264759 - T SHPRH Frame_Shift_Ins p.G587Rfs*19 0.36 TCGA-2W-A8YY-01 6 146350562 146350562 G A GRM1 5'UTR 0.40 TCGA-2W-A8YY-01 6 146351060 146351060 G A GRM1 Missense_Mutation p.G136E 0.18 deleterious(0.02) possibly_damaging(0.744) TCGA-2W-A8YY-01 6 146720044 146720044 C T GRM1 Silent p.V623V 0.34 TCGA-2W-A8YY-01 6 146720549 146720549 T C GRM1 Missense_Mutation p.Y792H 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 147045463 147045463 G C ADGB Missense_Mutation p.G746A 0.36 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 6 147124358 147124358 A G ADGB Intron 0.27 TCGA-2W-A8YY-01 6 147560311 147560311 G A STXBP5 Silent p.A112A 0.28 TCGA-2W-A8YY-01 6 147635759 147635759 G A STXBP5 Nonsense_Mutation p.W463* 0.31 TCGA-2W-A8YY-01 6 147885855 147885855 C G SAMD5 3'UTR 0.38 TCGA-2W-A8YY-01 6 147886626 147886626 G A SAMD5 3'UTR 0.31 TCGA-2W-A8YY-01 6 148848644 148848644 G A SASH1 Missense_Mutation p.R447H 0.34 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 6 148865778 148865778 C - SASH1 Frame_Shift_Del p.W1060Gfs*16 0.11 TCGA-2W-A8YY-01 6 149721804 149721804 G T SUMO4 Missense_Mutation p.G93C 0.09 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 149783073 149783073 T C ZC3H12D Silent p.G113G 0.51 TCGA-2W-A8YY-01 6 149826775 149826775 C A PPIL4 Missense_Mutation p.K431N 0.23 tolerated(0.14) benign(0.003) TCGA-2W-A8YY-01 6 150123470 150123470 C T PCMT1 Silent p.Y271Y 0.42 TCGA-2W-A8YY-01 6 150205605 150205605 C T RAET1E 3'Flank 0.47 TCGA-2W-A8YY-01 6 150240577 150240577 C T RAET1G Intron 0.38 TCGA-2W-A8YY-01 6 150269908 150269908 C T ULBP2 3'UTR 0.57 TCGA-2W-A8YY-01 6 150322550 150322550 C T RAET1K RNA 0.35 TCGA-2W-A8YY-01 6 150342131 150342131 A G RAET1L Missense_Mutation p.S181P 0.37 deleterious(0.03) benign(0.02) TCGA-2W-A8YY-01 6 151130328 151130328 C T PLEKHG1 Nonsense_Mutation p.R334* 0.50 TCGA-2W-A8YY-01 6 151130542 151130542 T C PLEKHG1 Missense_Mutation p.V374A 0.23 deleterious(0.01) possibly_damaging(0.745) TCGA-2W-A8YY-01 6 151336665 151336665 G A MTHFD1L Missense_Mutation p.A808T 0.41 deleterious(0.02) possibly_damaging(0.87) TCGA-2W-A8YY-01 6 151670022 151670022 C T AKAP12 Nonsense_Mutation p.Q166* 0.42 TCGA-2W-A8YY-01 6 151674503 151674503 C T AKAP12 Silent p.V1659V 0.50 TCGA-2W-A8YY-01 6 151766817 151766817 G A RMND1 Silent p.L44L 0.46 TCGA-2W-A8YY-01 6 151859375 151859375 G A CCDC170 Missense_Mutation p.A128T 0.38 tolerated(0.71) benign(0.003) TCGA-2W-A8YY-01 6 15246780 15246780 G A JARID2 Missense_Mutation p.E4K 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.827) TCGA-2W-A8YY-01 6 152485346 152485346 G A SYNE1 Silent p.Y7914Y 0.14 TCGA-2W-A8YY-01 6 152614760 152614760 G A SYNE1 Missense_Mutation p.P5992L 0.38 benign(0.002) TCGA-2W-A8YY-01 6 152655339 152655339 T C SYNE1 Missense_Mutation p.T4200A 0.28 probably_damaging(0.996) TCGA-2W-A8YY-01 6 152686151 152686151 G T SYNE1 Missense_Mutation p.L3326I 0.35 probably_damaging(0.995) TCGA-2W-A8YY-01 6 152722444 152722444 C T SYNE1 Silent p.E2286E 0.41 TCGA-2W-A8YY-01 6 152751335 152751335 G A SYNE1 Missense_Mutation p.S1567F 0.32 benign(0.429) TCGA-2W-A8YY-01 6 152755019 152755019 G T SYNE1 Missense_Mutation p.L1458M 0.46 probably_damaging(0.914) TCGA-2W-A8YY-01 6 152768624 152768624 G T SYNE1 Missense_Mutation p.S1213Y 0.41 possibly_damaging(0.594) TCGA-2W-A8YY-01 6 152772188 152772188 C T SYNE1 Silent p.E1060E 0.30 TCGA-2W-A8YY-01 6 153292422 153292422 G A FBXO5 Missense_Mutation p.T407M 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 153293427 153293427 G A FBXO5 Nonsense_Mutation p.R358* 0.47 TCGA-2W-A8YY-01 6 154410981 154410981 C T OPRM1 Missense_Mutation p.A197V 0.10 tolerated(0.58) probably_damaging(0.992) TCGA-2W-A8YY-01 6 154429121 154429121 T G OPRM1 Intron 0.10 TCGA-2W-A8YY-01 6 154439993 154439993 C A OPRM1 3'Flank 0.21 TCGA-2W-A8YY-01 6 15507477 15507478 - T JARID2 Frame_Shift_Ins p.S886Ffs*13 0.16 TCGA-2W-A8YY-01 6 157431622 157431622 G A ARID1B Silent p.P766P 0.50 TCGA-2W-A8YY-01 6 157502243 157502243 C T ARID1B Silent p.A1092A 0.32 TCGA-2W-A8YY-01 6 157522598 157522598 C T ARID1B Nonsense_Mutation p.R1624* 0.19 TCGA-2W-A8YY-01 6 157525060 157525060 C T ARID1B Missense_Mutation p.T1652M 0.38 probably_damaging(0.999) TCGA-2W-A8YY-01 6 157527679 157527679 C T ARID1B Nonsense_Mutation p.R1802* 0.37 TCGA-2W-A8YY-01 6 158483030 158483030 C T SYNJ2 Missense_Mutation p.L321F 0.38 deleterious(0.03) possibly_damaging(0.803) TCGA-2W-A8YY-01 6 158509738 158509738 C T SYNJ2 Silent p.S1130S 0.32 TCGA-2W-A8YY-01 6 158540137 158540137 C T SERAC1 Missense_Mutation p.R411H 0.52 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 158541572 158541572 G A SERAC1 Missense_Mutation p.P351S 0.29 tolerated(0.26) benign(0.001) TCGA-2W-A8YY-01 6 158549197 158549197 G A SERAC1 Missense_Mutation p.R320C 0.30 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 6 158551446 158551446 C T SERAC1 Missense_Mutation p.V271M 0.34 tolerated(0.12) benign(0.019) TCGA-2W-A8YY-01 6 158924647 158924647 G A TULP4 Missense_Mutation p.V1318I 0.13 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-2W-A8YY-01 6 158925064 158925064 C T TULP4 Missense_Mutation p.R1457W 0.44 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 6 159029444 159029444 G A TMEM181 Silent p.L388L 0.39 TCGA-2W-A8YY-01 6 159057669 159057669 G T DYNLT1 3'UTR 0.32 TCGA-2W-A8YY-01 6 159184417 159184417 C A SYTL3 Missense_Mutation p.H533Q 0.47 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 6 159206423 159206423 C T EZR Missense_Mutation p.A129T 0.32 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 6 159404831 159404831 G A RSPH3 Missense_Mutation p.L261F 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 159456702 159456702 G A TAGAP 3'UTR 0.32 TCGA-2W-A8YY-01 6 159653792 159653792 G A FNDC1 Missense_Mutation p.A750T 0.39 tolerated_low_confidence(0.18) unknown(0) TCGA-2W-A8YY-01 6 159655327 159655327 G A FNDC1 Silent p.L1261L 0.22 TCGA-2W-A8YY-01 6 159670111 159670111 G A FNDC1 Silent p.E1577E 0.38 TCGA-2W-A8YY-01 6 160176534 160176534 A G WTAP Missense_Mutation p.D361G 0.37 deleterious_low_confidence(0.01) benign(0.359) TCGA-2W-A8YY-01 6 160210517 160210517 C T TCP1 5'UTR 0.46 TCGA-2W-A8YY-01 6 160221759 160221759 C T PNLDC1 5'UTR 0.43 TCGA-2W-A8YY-01 6 160230173 160230173 C T PNLDC1 Silent p.L245L 0.41 TCGA-2W-A8YY-01 6 160479962 160479962 G A IGF2R Missense_Mutation p.V975I 0.41 tolerated(0.2) benign(0.008) TCGA-2W-A8YY-01 6 160496992 160496992 G A IGF2R Silent p.S1760S 0.39 TCGA-2W-A8YY-01 6 160510171 160510171 G A IGF2R Missense_Mutation p.S2118N 0.33 tolerated(0.53) benign(0.005) TCGA-2W-A8YY-01 6 160523581 160523581 C T IGF2R Silent p.D2291D 0.20 TCGA-2W-A8YY-01 6 160526142 160526142 G A IGF2R 3'UTR 0.35 TCGA-2W-A8YY-01 6 160679401 160679401 G A SLC22A2 Missense_Mutation p.T130M 0.41 tolerated(0.12) benign(0.223) TCGA-2W-A8YY-01 6 160679490 160679490 G A SLC22A2 Silent p.T100T 0.40 TCGA-2W-A8YY-01 6 160679519 160679519 G A SLC22A2 Missense_Mutation p.R91C 0.39 deleterious(0) probably_damaging(0.932) TCGA-2W-A8YY-01 6 160679753 160679753 C A SLC22A2 Missense_Mutation p.G13W 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 160888578 160888578 C T LPAL2 RNA 0.46 TCGA-2W-A8YY-01 6 160905251 160905251 T C LPAL2 RNA 0.36 TCGA-2W-A8YY-01 6 160977198 160977198 G A LPA Missense_Mutation p.P1611L 0.42 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 6 161469712 161469712 A G MAP3K4 Silent p.E136E 0.20 TCGA-2W-A8YY-01 6 161470080 161470080 G A MAP3K4 Missense_Mutation p.R259Q 0.62 tolerated(0.42) benign(0.014) TCGA-2W-A8YY-01 6 161470508 161470508 G T MAP3K4 Missense_Mutation p.D402Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 16147613 16147613 A G MYLIP 3'Flank 0.38 TCGA-2W-A8YY-01 6 161510389 161510389 G A MAP3K4 Silent p.A953A 0.32 TCGA-2W-A8YY-01 6 161653189 161653189 G A AGPAT4 Silent p.Y19Y 0.24 TCGA-2W-A8YY-01 6 161653236 161653236 C T AGPAT4 Missense_Mutation p.A4T 0.48 tolerated(0.11) benign(0.001) TCGA-2W-A8YY-01 6 16306668 16306668 G A ATXN1 Silent p.R780R 0.26 TCGA-2W-A8YY-01 6 16306708 16306708 G A ATXN1 Missense_Mutation p.A767V 0.30 tolerated(0.34) benign(0.002) TCGA-2W-A8YY-01 6 16327120 16327120 G A ATXN1 Silent p.Y474Y 0.41 TCGA-2W-A8YY-01 6 16327660 16327660 G A ATXN1 Silent p.A294A 0.66 TCGA-2W-A8YY-01 6 163985632 163985632 G A QKI Intron 0.38 TCGA-2W-A8YY-01 6 163987188 163987188 G A QKI Intron 0.76 TCGA-2W-A8YY-01 6 163990131 163990131 C A QKI Intron 0.19 TCGA-2W-A8YY-01 6 163991878 163991878 A G QKI 3'UTR 0.33 TCGA-2W-A8YY-01 6 165801942 165801942 G A PDE10A Missense_Mutation p.R553C 0.48 tolerated(0.15) probably_damaging(0.986) TCGA-2W-A8YY-01 6 166575949 166575949 C T T Missense_Mutation p.R297Q 0.27 tolerated(0.11) benign(0.014) TCGA-2W-A8YY-01 6 166778849 166778849 T C MPC1 3'UTR 0.34 TCGA-2W-A8YY-01 6 166825512 166825512 G A RPS6KA2 3'UTR 0.50 TCGA-2W-A8YY-01 6 166825568 166825568 C T RPS6KA2 3'UTR 0.29 TCGA-2W-A8YY-01 6 166826160 166826160 G A RPS6KA2 3'UTR 0.45 TCGA-2W-A8YY-01 6 166883360 166883360 C T RPS6KA2 Missense_Mutation p.R322H 0.35 deleterious(0) possibly_damaging(0.745) TCGA-2W-A8YY-01 6 166902356 166902356 C T RPS6KA2 Missense_Mutation p.R299Q 0.40 tolerated(0.16) benign(0.175) TCGA-2W-A8YY-01 6 167550184 167550184 C T CCR6 Missense_Mutation p.L156F 0.19 tolerated(0.13) benign(0.012) TCGA-2W-A8YY-01 6 167550191 167550191 C T CCR6 Missense_Mutation p.S158F 0.33 deleterious(0) benign(0.15) TCGA-2W-A8YY-01 6 167570890 167570890 C T GPR31 Missense_Mutation p.A144T 0.35 tolerated(0.18) benign(0.103) TCGA-2W-A8YY-01 6 16761564 16761565 - G ATXN1 5'UTR 0.19 TCGA-2W-A8YY-01 6 167721270 167721270 C T UNC93A Missense_Mutation p.A327V 0.26 deleterious(0.03) benign(0.086) TCGA-2W-A8YY-01 6 168312052 168312052 G A MLLT4 Missense_Mutation p.M640I 0.33 deleterious(0.01) benign(0.037) TCGA-2W-A8YY-01 6 168319521 168319521 C T MLLT4 Missense_Mutation p.P932L 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 168352529 168352529 C T MLLT4 Missense_Mutation p.R1492C 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 168366528 168366528 C T MLLT4 3'Flank 0.47 TCGA-2W-A8YY-01 6 168376771 168376771 C A RP3-470B24.5 RNA 0.13 TCGA-2W-A8YY-01 6 168394400 168394400 G A KIF25-AS1 RNA 0.17 TCGA-2W-A8YY-01 6 168394525 168394525 C T KIF25-AS1 RNA 0.36 TCGA-2W-A8YY-01 6 168439394 168439394 C T KIF25 Missense_Mutation p.A160V 0.26 deleterious(0.04) benign(0.004) TCGA-2W-A8YY-01 6 168461624 168461624 G A FRMD1 Missense_Mutation p.R387C 0.47 tolerated(0.19) possibly_damaging(0.724) TCGA-2W-A8YY-01 6 169622442 169622442 C T THBS2 Missense_Mutation p.M1041I 0.14 deleterious(0) probably_damaging(0.96) TCGA-2W-A8YY-01 6 170036502 170036502 C T WDR27 Silent p.R656R 0.37 TCGA-2W-A8YY-01 6 170047908 170047908 C T WDR27 Missense_Mutation p.A540T 0.75 tolerated(0.29) benign(0.133) TCGA-2W-A8YY-01 6 170060807 170060807 C T WDR27 Missense_Mutation p.V361I 0.37 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 6 170103737 170103737 A G C6orf120 3'UTR 0.30 TCGA-2W-A8YY-01 6 170104521 170104522 - T C6orf120 3'UTR 0.29 TCGA-2W-A8YY-01 6 170155490 170155490 C T ERMARD Missense_Mutation p.P96L 0.32 tolerated(0.97) benign(0.009) TCGA-2W-A8YY-01 6 170169701 170169701 G A ERMARD Silent p.G375G 0.28 TCGA-2W-A8YY-01 6 170173497 170173497 A G ERMARD Missense_Mutation p.Q439R 0.38 deleterious(0.02) possibly_damaging(0.637) TCGA-2W-A8YY-01 6 170592385 170592385 C T DLL1 Missense_Mutation p.R661H 0.22 tolerated(0.12) benign(0.001) TCGA-2W-A8YY-01 6 170592852 170592852 G A DLL1 Silent p.C505C 0.50 TCGA-2W-A8YY-01 6 170597327 170597327 G A DLL1 Missense_Mutation p.P224S 0.27 tolerated(0.07) benign(0.317) TCGA-2W-A8YY-01 6 170858117 170858117 C T PSMB1 Silent p.R66R 0.35 TCGA-2W-A8YY-01 6 170878843 170878843 T C TBP Missense_Mutation p.V274A 0.30 tolerated(0.43) benign(0.379) TCGA-2W-A8YY-01 6 170881599 170881599 C T TBP 3'UTR 0.54 TCGA-2W-A8YY-01 6 17292270 17292270 G A RBM24 Missense_Mutation p.A211T 0.44 tolerated(0.36) possibly_damaging(0.502) TCGA-2W-A8YY-01 6 17764639 17764639 C T KIF13A Missense_Mutation p.S1707N 0.35 tolerated_low_confidence(0.27) benign(0.002) TCGA-2W-A8YY-01 6 17797028 17797028 T C KIF13A Silent p.E938E 0.36 TCGA-2W-A8YY-01 6 17800226 17800226 C A KIF13A Missense_Mutation p.S858I 0.21 tolerated(0.14) benign(0.258) TCGA-2W-A8YY-01 6 17831456 17831456 C T KIF13A Missense_Mutation p.R426Q 0.26 tolerated(0.35) benign(0.018) TCGA-2W-A8YY-01 6 18222992 18222992 T C KDM1B 3'UTR 0.09 TCGA-2W-A8YY-01 6 1930454 1930454 G A GMDS Silent p.F218F 0.36 TCGA-2W-A8YY-01 6 19839618 19839618 A G ID4 3'UTR 0.45 TCGA-2W-A8YY-01 6 20480153 20480153 G A E2F3 Missense_Mutation p.G157E 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 6 20493249 20493249 A G E2F3 3'UTR 0.35 TCGA-2W-A8YY-01 6 20493581 20493581 C T E2F3 3'UTR 0.54 TCGA-2W-A8YY-01 6 21231340 21231340 C T CDKAL1 3'UTR 0.41 TCGA-2W-A8YY-01 6 22292802 22292802 T C PRL Missense_Mutation p.T93A 0.28 deleterious(0) possibly_damaging(0.681) TCGA-2W-A8YY-01 6 22569686 22569686 C T HDGFL1 5'Flank 0.46 TCGA-2W-A8YY-01 6 22570179 22570179 C T HDGFL1 Silent p.G125G 0.21 TCGA-2W-A8YY-01 6 24145868 24145868 C T NRSN1 Silent p.G94G 0.44 TCGA-2W-A8YY-01 6 24146652 24146652 C T NRSN1 3'UTR 0.36 TCGA-2W-A8YY-01 6 24454258 24454258 G A GPLD1 Silent p.I440I 0.23 TCGA-2W-A8YY-01 6 24563717 24563717 T C KIAA0319 Missense_Mutation p.T821A 0.60 deleterious(0.03) benign(0.019) TCGA-2W-A8YY-01 6 24600912 24600912 C T KIAA0319 Intron 0.41 TCGA-2W-A8YY-01 6 24701694 24701694 T C ACOT13 Missense_Mutation p.S92P 0.34 deleterious(0.03) possibly_damaging(0.63) TCGA-2W-A8YY-01 6 24781736 24781736 G A GMNN Missense_Mutation p.R54Q 0.32 tolerated(0.1) benign(0.035) TCGA-2W-A8YY-01 6 24836071 24836071 C T FAM65B Missense_Mutation p.G711R 0.40 deleterious(0) probably_damaging(0.97) TCGA-2W-A8YY-01 6 24850117 24850117 T C FAM65B Missense_Mutation p.K287R 0.48 tolerated(0.06) benign(0.207) TCGA-2W-A8YY-01 6 25594720 25594720 A T LRRC16A Missense_Mutation p.E1028D 0.37 tolerated(0.53) benign(0.029) TCGA-2W-A8YY-01 6 25670291 25670291 A G SCGN Missense_Mutation p.Y153C 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 25770683 25770683 C T SLC17A4 Silent p.T201T 0.29 TCGA-2W-A8YY-01 6 25915805 25915805 A C SLC17A2 Intron 0.56 TCGA-2W-A8YY-01 6 25983589 25983589 G A TRIM38 Missense_Mutation p.G358R 0.35 tolerated(0.4) benign(0.081) TCGA-2W-A8YY-01 6 26043859 26043859 T G HIST1H2BB Silent p.P9P 0.27 TCGA-2W-A8YY-01 6 26045743 26045743 C T HIST1H3C Silent p.G35G 0.13 TCGA-2W-A8YY-01 6 26092973 26092973 G A HFE Missense_Mutation p.R226Q 0.46 tolerated(0.87) benign(0.198) TCGA-2W-A8YY-01 6 26184065 26184065 C A HIST1H2BE Silent p.G14G 0.10 TCGA-2W-A8YY-01 6 26199128 26199128 A G HIST1H2AD Missense_Mutation p.V115A 0.08 tolerated_low_confidence(0.13) benign(0.031) TCGA-2W-A8YY-01 6 26225646 26225646 C T HIST1H3E Silent p.S88S 0.35 TCGA-2W-A8YY-01 6 2623466 2623466 C T C6orf195 3'UTR 0.44 TCGA-2W-A8YY-01 6 26240776 26240776 C T HIST1H4F Silent p.R41R 0.29 TCGA-2W-A8YY-01 6 26250734 26250734 C T HIST1H3F Missense_Mutation p.G34S 0.38 deleterious_low_confidence(0.04) probably_damaging(0.985) TCGA-2W-A8YY-01 6 26271224 26271224 C T HIST1H3G Missense_Mutation p.R130H 0.29 tolerated_low_confidence(0.07) benign(0.346) TCGA-2W-A8YY-01 6 26273320 26273320 C T HIST1H2BI Silent p.S39S 0.11 TCGA-2W-A8YY-01 6 26375794 26375794 T C BTN3A2 Intron 0.09 TCGA-2W-A8YY-01 6 26375997 26375997 G A BTN3A2 Intron 0.34 TCGA-2W-A8YY-01 6 26412976 26412976 T C BTN3A1 Intron 0.35 TCGA-2W-A8YY-01 6 26413380 26413380 C T BTN3A1 Intron 0.49 TCGA-2W-A8YY-01 6 26423160 26423160 G A BTN2A3P Splice_Site 0.24 TCGA-2W-A8YY-01 6 26423647 26423647 G T BTN2A3P RNA 0.50 TCGA-2W-A8YY-01 6 26446023 26446023 C T BTN3A3 Silent p.P175P 0.40 TCGA-2W-A8YY-01 6 26452297 26452297 G A BTN3A3 Silent p.E471E 0.11 TCGA-2W-A8YY-01 6 26598535 26598535 G A ABT1 Missense_Mutation p.A161T 0.35 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 6 26638778 26638778 A G ZNF322 Missense_Mutation p.Y2H 0.40 tolerated_low_confidence(0.27) benign(0) TCGA-2W-A8YY-01 6 2667782 2667782 C T MYLK4 3'UTR 0.30 TCGA-2W-A8YY-01 6 2678581 2678581 C T MYLK4 Missense_Mutation p.G305S 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 26846538 26846538 C T GUSBP2 RNA 0.46 TCGA-2W-A8YY-01 6 27107256 27107256 G A HIST1H4I Missense_Mutation p.G57R 0.34 deleterious(0.02) benign(0.234) TCGA-2W-A8YY-01 6 27114243 27114243 A G HIST1H2BK Missense_Mutation p.V112A 0.31 deleterious_low_confidence(0.01) benign(0.109) TCGA-2W-A8YY-01 6 27218869 27218869 G T PRSS16 Missense_Mutation p.A214S 0.52 deleterious(0.01) possibly_damaging(0.794) TCGA-2W-A8YY-01 6 27222639 27222639 C T PRSS16 Silent p.L440L 0.33 TCGA-2W-A8YY-01 6 27222778 27222778 C T PRSS16 Silent p.P448P 0.36 TCGA-2W-A8YY-01 6 27278021 27278021 A G POM121L2 Silent p.F643F 0.41 TCGA-2W-A8YY-01 6 27278377 27278377 G A POM121L2 Missense_Mutation p.P525S 0.60 tolerated(0.15) benign(0.01) TCGA-2W-A8YY-01 6 27782987 27782987 T C HIST1H2BM Missense_Mutation p.S56P 0.35 deleterious_low_confidence(0) benign(0.406) TCGA-2W-A8YY-01 6 27783097 27783097 G A HIST1H2BM Silent p.S92S 0.46 TCGA-2W-A8YY-01 6 27833291 27833291 G A HIST1H2AL Silent p.A53A 0.45 TCGA-2W-A8YY-01 6 27834964 27834964 G A HIST1H1B Missense_Mutation p.A115V 0.29 tolerated(0.1) unknown(0) TCGA-2W-A8YY-01 6 2783701 2783701 C T WRNIP1 Silent p.N516N 0.09 TCGA-2W-A8YY-01 6 27858493 27858493 C T HIST1H3J Silent p.A26A 0.41 TCGA-2W-A8YY-01 6 27879518 27879518 C A OR2B2 Missense_Mutation p.A194S 0.30 tolerated(0.39) possibly_damaging(0.507) TCGA-2W-A8YY-01 6 27925550 27925550 C A OR2B6 Missense_Mutation p.L178I 0.29 tolerated(0.11) possibly_damaging(0.595) TCGA-2W-A8YY-01 6 27925686 27925686 G A OR2B6 Missense_Mutation p.R223Q 0.35 tolerated(0.64) benign(0.007) TCGA-2W-A8YY-01 6 27925801 27925801 A G OR2B6 Silent p.Q261Q 0.34 TCGA-2W-A8YY-01 6 28056644 28056644 A C ZNF165 Missense_Mutation p.E285A 0.35 tolerated(0.6) probably_damaging(0.984) TCGA-2W-A8YY-01 6 28059101 28059101 G A ZNF165 3'Flank 0.44 TCGA-2W-A8YY-01 6 28121019 28121019 C T ZKSCAN8 Nonsense_Mutation p.R321* 0.11 TCGA-2W-A8YY-01 6 28121060 28121060 C A ZKSCAN8 Missense_Mutation p.S334R 0.47 deleterious(0) benign(0.005) TCGA-2W-A8YY-01 6 28195551 28195551 C A ZSCAN9 Silent p.S168S 0.41 TCGA-2W-A8YY-01 6 28269582 28269582 C T PGBD1 Missense_Mutation p.R651C 0.40 tolerated(0.06) possibly_damaging(0.636) TCGA-2W-A8YY-01 6 28327544 28327544 C T ZKSCAN3 Missense_Mutation p.R61C 0.36 deleterious(0) probably_damaging(0.976) TCGA-2W-A8YY-01 6 28333645 28333645 T C ZKSCAN3 Silent p.C400C 0.32 TCGA-2W-A8YY-01 6 2834113 2834113 C T SERPINB1 Missense_Mutation p.R290H 0.31 tolerated(0.2) benign(0.004) TCGA-2W-A8YY-01 6 2838123 2838123 C T SERPINB1 Silent p.Q139Q 0.35 TCGA-2W-A8YY-01 6 28402056 28402056 C G ZSCAN23 3'UTR 0.50 TCGA-2W-A8YY-01 6 28403333 28403333 G A ZSCAN23 Missense_Mutation p.P154S 0.42 tolerated(0.41) benign(0.016) TCGA-2W-A8YY-01 6 28540693 28540693 C T SCAND3 Silent p.A991A 0.27 TCGA-2W-A8YY-01 6 28543477 28543477 C A SCAND3 Missense_Mutation p.K335N 0.28 deleterious_low_confidence(0.02) benign(0.193) TCGA-2W-A8YY-01 6 28829198 28829198 G A XXbac-BPG308K3.6 RNA 0.45 TCGA-2W-A8YY-01 6 28887940 28887940 C T TRIM27 Missense_Mutation p.R199H 0.33 tolerated(0.41) possibly_damaging(0.84) TCGA-2W-A8YY-01 6 28889724 28889724 T C TRIM27 Missense_Mutation p.K154R 0.09 tolerated(0.76) possibly_damaging(0.636) TCGA-2W-A8YY-01 6 28967312 28967312 G A ZNF311 Missense_Mutation p.L88F 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 29080415 29080415 G A OR2J3 Missense_Mutation p.A250T 0.42 deleterious(0) benign(0.096) TCGA-2W-A8YY-01 6 29141710 29141710 G A OR2J2 Missense_Mutation p.V100I 0.49 tolerated(0.82) benign(0.003) TCGA-2W-A8YY-01 6 29274784 29274784 C T OR14J1 Silent p.A106A 0.40 TCGA-2W-A8YY-01 6 29323517 29323517 A G OR5V1 Silent p.G152G 0.32 TCGA-2W-A8YY-01 6 29394654 29394654 C T OR11A1 Silent p.T255T 0.53 TCGA-2W-A8YY-01 6 29429703 29429703 C A OR2H1 Missense_Mutation p.L53I 0.35 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 6 2948727 2948727 C T SERPINB6 Silent p.L312L 0.45 TCGA-2W-A8YY-01 6 29556051 29556051 C T OR2H2 Silent p.C110C 0.36 TCGA-2W-A8YY-01 6 29595437 29595437 C T GABBR1 Intron 0.50 TCGA-2W-A8YY-01 6 29639052 29639052 A G MOG Intron 0.35 TCGA-2W-A8YY-01 6 29641346 29641346 C T ZFP57 Missense_Mutation p.G181D 0.51 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 6 29643174 29643174 T C ZFP57 Missense_Mutation p.E114G 0.39 deleterious(0.04) possibly_damaging(0.65) TCGA-2W-A8YY-01 6 29693333 29693333 G T HLA-F Missense_Mutation p.K332N 0.40 deleterious_low_confidence(0.02) benign(0.214) TCGA-2W-A8YY-01 6 29798608 29798608 C T HLA-G 3'UTR 0.38 TCGA-2W-A8YY-01 6 29911192 29911192 C T HLA-A Missense_Mutation p.A164V 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 6 29976088 29976088 G A ZNRD1-AS1 Intron 0.30 TCGA-2W-A8YY-01 6 30024719 30024719 T G ZNRD1 5'Flank 0.37 TCGA-2W-A8YY-01 6 30025372 30025372 C A ZNRD1 5'Flank 0.30 TCGA-2W-A8YY-01 6 30035163 30035163 C A PPP1R11 5'UTR 0.30 TCGA-2W-A8YY-01 6 30036954 30036954 C T PPP1R11 Silent p.G84G 0.44 TCGA-2W-A8YY-01 6 30038062 30038062 C A RNF39 3'UTR 0.31 TCGA-2W-A8YY-01 6 30038535 30038535 G A RNF39 3'UTR 0.44 TCGA-2W-A8YY-01 6 30043372 30043372 G T RNF39 Silent p.S65S 0.48 TCGA-2W-A8YY-01 6 30080619 30080619 C A TRIM31 5'UTR 0.58 TCGA-2W-A8YY-01 6 30121442 30121442 T C TRIM10 3'UTR 0.32 TCGA-2W-A8YY-01 6 30136240 30136240 C T TRIM15 Missense_Mutation p.T214I 0.17 tolerated(0.06) benign(0.022) TCGA-2W-A8YY-01 6 30154327 30154327 T C TRIM26 Missense_Mutation p.T316A 0.53 tolerated(0.14) possibly_damaging(0.869) TCGA-2W-A8YY-01 6 30157202 30157202 T C TRIM26 Silent p.E299E 0.18 TCGA-2W-A8YY-01 6 30311349 30311349 A G TRIM39 3'UTR 0.44 TCGA-2W-A8YY-01 6 30520861 30520861 C T GNL1 Missense_Mutation p.V302M 0.38 deleterious(0) probably_damaging(0.928) TCGA-2W-A8YY-01 6 30521160 30521160 G A GNL1 Missense_Mutation p.R259W 0.28 deleterious(0.02) possibly_damaging(0.676) TCGA-2W-A8YY-01 6 30529865 30529865 A G PRR3 Missense_Mutation p.T142A 0.36 tolerated_low_confidence(0.12) benign(0.002) TCGA-2W-A8YY-01 6 30530275 30530275 C T PRR3 3'UTR 0.09 TCGA-2W-A8YY-01 6 30530319 30530319 C T PRR3 3'UTR 0.16 TCGA-2W-A8YY-01 6 30530511 30530511 C T PRR3 3'UTR 0.37 TCGA-2W-A8YY-01 6 30554040 30554040 C T ABCF1 Missense_Mutation p.P615S 0.40 deleterious(0.01) benign(0.325) TCGA-2W-A8YY-01 6 30569385 30569385 G A PPP1R10 Missense_Mutation p.R922C 0.36 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 6 30570081 30570081 C T PPP1R10 Missense_Mutation p.R782H 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-2W-A8YY-01 6 30571950 30571950 C T PPP1R10 Missense_Mutation p.R448Q 0.45 deleterious(0.01) possibly_damaging(0.805) TCGA-2W-A8YY-01 6 30611467 30611467 T C ATAT1 Intron 0.27 TCGA-2W-A8YY-01 6 30614928 30614928 A G C6orf136 5'UTR 0.39 TCGA-2W-A8YY-01 6 30624763 30624763 C T DHX16 Missense_Mutation p.G705D 0.28 deleterious(0) unknown(0) TCGA-2W-A8YY-01 6 30657955 30657955 G T NRM Missense_Mutation p.L67M 0.41 tolerated(0.23) probably_damaging(0.988) TCGA-2W-A8YY-01 6 30658643 30658643 C A NRM Missense_Mutation p.G37W 0.44 deleterious(0.01) possibly_damaging(0.893) TCGA-2W-A8YY-01 6 30671241 30671241 C T MDC1 Missense_Mutation p.R1879H 0.35 deleterious(0.03) probably_damaging(0.991) TCGA-2W-A8YY-01 6 30676043 30676043 G A MDC1 Silent p.H771H 0.33 TCGA-2W-A8YY-01 6 30680774 30680774 C T MDC1 Silent p.E315E 0.35 TCGA-2W-A8YY-01 6 30692181 30692181 G A TUBB 3'UTR 0.14 TCGA-2W-A8YY-01 6 30698729 30698729 C T FLOT1 Missense_Mutation p.R291H 0.21 tolerated(0.11) possibly_damaging(0.684) TCGA-2W-A8YY-01 6 30707966 30707966 C T FLOT1 Missense_Mutation p.R231Q 0.46 tolerated(0.16) benign(0.003) TCGA-2W-A8YY-01 6 30859177 30859177 G A DDR1 Missense_Mutation p.A196T 0.38 tolerated(0.09) benign(0.135) TCGA-2W-A8YY-01 6 30866764 30866764 G A DDR1 Missense_Mutation p.E857K 0.46 deleterious(0) benign(0.007) TCGA-2W-A8YY-01 6 30879874 30879874 G A GTF2H4 Silent p.Q303Q 0.31 TCGA-2W-A8YY-01 6 30882611 30882611 C T VARS2 Silent p.L30L 0.36 TCGA-2W-A8YY-01 6 30882762 30882762 G A VARS2 Missense_Mutation p.R80H 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 30887547 30887547 C T VARS2 Nonsense_Mutation p.R393* 0.42 TCGA-2W-A8YY-01 6 30891146 30891146 C T VARS2 Missense_Mutation p.P807L 0.09 tolerated(0.67) benign(0.029) TCGA-2W-A8YY-01 6 30893442 30893442 C T VARS2 Silent p.S999S 0.42 TCGA-2W-A8YY-01 6 31079339 31079339 C T C6orf15 Missense_Mutation p.R266Q 0.37 tolerated(0.34) possibly_damaging(0.776) TCGA-2W-A8YY-01 6 31111076 31111076 C T CCHCR1 Missense_Mutation p.R761H 0.46 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 6 31111158 31111158 C T CCHCR1 Missense_Mutation p.A734T 0.37 tolerated(0.5) benign(0.062) TCGA-2W-A8YY-01 6 31113249 31113249 G A CCHCR1 Missense_Mutation p.A572V 0.34 deleterious(0.04) possibly_damaging(0.704) TCGA-2W-A8YY-01 6 31116255 31116255 C T CCHCR1 Missense_Mutation p.A503T 0.48 tolerated(0.06) possibly_damaging(0.731) TCGA-2W-A8YY-01 6 31125242 31125242 G A CCHCR1 Missense_Mutation p.R46C 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.453) TCGA-2W-A8YY-01 6 3129281 3129281 G A BPHL Silent p.A127A 0.30 TCGA-2W-A8YY-01 6 31498700 31498700 C A DDX39B Missense_Mutation p.A376S 0.38 deleterious(0.01) possibly_damaging(0.905) TCGA-2W-A8YY-01 6 31515979 31515979 C T NFKBIL1 Nonsense_Mutation p.R33* 0.37 TCGA-2W-A8YY-01 6 31549621 31549621 C T LTB Missense_Mutation p.D60N 0.18 tolerated(0.29) benign(0.288) TCGA-2W-A8YY-01 6 31557596 31557596 G A NCR3 Silent p.V117V 0.31 TCGA-2W-A8YY-01 6 31595677 31595677 C T PRRC2A Missense_Mutation p.R476W 0.43 unknown(0) TCGA-2W-A8YY-01 6 31619446 31619446 A C BAG6 Missense_Mutation p.I32S 0.34 tolerated(0.25) benign(0.048) TCGA-2W-A8YY-01 6 31639916 31639916 C A CSNK2B-LY6G5B-1181 3'UTR 0.43 TCGA-2W-A8YY-01 6 31679812 31679812 C T XXbac-BPG32J3.20 3'UTR 0.34 TCGA-2W-A8YY-01 6 31683303 31683303 G A LY6G6F 3'Flank 0.29 TCGA-2W-A8YY-01 6 31729606 31729606 C A MSH5 Silent p.T732T 0.30 TCGA-2W-A8YY-01 6 31733772 31733772 G A VWA7 Missense_Mutation p.A796V 0.44 deleterious(0.02) benign(0.087) TCGA-2W-A8YY-01 6 31735240 31735240 C T VWA7 Missense_Mutation p.R563H 0.44 tolerated(0.34) benign(0.01) TCGA-2W-A8YY-01 6 31747295 31747295 C T VARS Missense_Mutation p.E1103K 0.48 tolerated(0.37) benign(0.064) TCGA-2W-A8YY-01 6 31752434 31752434 A G VARS Missense_Mutation p.Y469H 0.12 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 6 31762863 31762863 T C VARS Silent p.P44P 0.26 TCGA-2W-A8YY-01 6 31778194 31778194 C T HSPA1L Missense_Mutation p.R519H 0.38 deleterious_low_confidence(0) benign(0.003) TCGA-2W-A8YY-01 6 31783547 31783547 C T HSPA1A Missense_Mutation p.A5V 0.34 tolerated_low_confidence(0.15) benign(0.004) TCGA-2W-A8YY-01 6 31785227 31785227 C T HSPA1A Missense_Mutation p.A565V 0.32 tolerated_low_confidence(0.08) benign(0.129) TCGA-2W-A8YY-01 6 31827819 31827819 G A NEU1 Nonsense_Mutation p.R341* 0.22 TCGA-2W-A8YY-01 6 31828374 31828374 G A NEU1 Missense_Mutation p.R214C 0.17 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 31831397 31831397 G A SLC44A4 3'UTR 0.31 TCGA-2W-A8YY-01 6 31851628 31851628 G A EHMT2 Silent p.C957C 0.12 TCGA-2W-A8YY-01 6 31851691 31851691 G T EHMT2 Silent p.P936P 0.15 TCGA-2W-A8YY-01 6 31867947 31867947 T C ZBTB12 Missense_Mutation p.N379S 0.32 tolerated(0.6) possibly_damaging(0.621) TCGA-2W-A8YY-01 6 31896646 31896646 C T CFB Intron 0.34 TCGA-2W-A8YY-01 6 31919890 31919890 G A NELFE 3'UTR 0.44 TCGA-2W-A8YY-01 6 31920074 31920074 T C NELFE 3'UTR 0.36 TCGA-2W-A8YY-01 6 31929738 31929738 G A SKIV2L Missense_Mutation p.R324Q 0.42 tolerated(0.59) benign(0.001) TCGA-2W-A8YY-01 6 31933591 31933591 G T SKIV2L Missense_Mutation p.G668V 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 31933633 31933633 G A SKIV2L Missense_Mutation p.R682H 0.14 deleterious(0.01) possibly_damaging(0.806) TCGA-2W-A8YY-01 6 31937067 31937067 G A SKIV2L Missense_Mutation p.R1137H 0.41 tolerated(0.31) benign(0.002) TCGA-2W-A8YY-01 6 31937172 31937172 T C SKIV2L Missense_Mutation p.V1172A 0.57 deleterious(0.03) possibly_damaging(0.841) TCGA-2W-A8YY-01 6 31964038 31964038 G A C4A Missense_Mutation p.A1148T 0.47 deleterious(0) probably_damaging(0.953) TCGA-2W-A8YY-01 6 31995025 31995025 G A C4B Missense_Mutation p.V869M 0.62 tolerated(0.85) benign(0.05) TCGA-2W-A8YY-01 6 32052292 32052292 C A TNXB Missense_Mutation p.A1115S 0.29 benign(0.034) TCGA-2W-A8YY-01 6 32052326 32052326 G T TNXB Silent p.P1103P 0.26 TCGA-2W-A8YY-01 6 32065045 32065045 A T TNXB Silent p.G195G 0.40 TCGA-2W-A8YY-01 6 32116854 32116854 G A PRRT1 3'UTR 0.37 TCGA-2W-A8YY-01 6 32117124 32117124 G A PRRT1 Missense_Mutation p.R266C 0.38 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 6 32132446 32132446 G T EGFL8 5'UTR 0.25 TCGA-2W-A8YY-01 6 32134551 32134551 T C EGFL8 Missense_Mutation p.W100R 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 32137062 32137062 G A AGPAT1 Silent p.G281G 0.33 TCGA-2W-A8YY-01 6 32138789 32138789 G A AGPAT1 Nonsense_Mutation p.R87* 0.43 TCGA-2W-A8YY-01 6 32148068 32148068 G A RNF5 Missense_Mutation p.A170T 0.46 deleterious(0) benign(0.194) TCGA-2W-A8YY-01 6 32148963 32148963 G A AGER Missense_Mutation p.S391L 0.33 deleterious_low_confidence(0.01) benign(0.091) TCGA-2W-A8YY-01 6 32153541 32153541 G A PBX2 3'UTR 0.10 TCGA-2W-A8YY-01 6 32153580 32153580 G A PBX2 3'UTR 0.09 TCGA-2W-A8YY-01 6 32155038 32155038 C T PBX2 Silent p.P335P 0.39 TCGA-2W-A8YY-01 6 32160861 32160861 A C GPSM3 5'Flank 0.46 TCGA-2W-A8YY-01 6 32169966 32169966 G A NOTCH4 Silent p.C1214C 0.10 TCGA-2W-A8YY-01 6 32303230 32303230 G A C6orf10 Silent p.L152L 0.19 TCGA-2W-A8YY-01 6 32410278 32410278 G A HLA-DRA Missense_Mutation p.E46K 0.19 deleterious(0) probably_damaging(0.96) TCGA-2W-A8YY-01 6 32487188 32487188 A G HLA-DRB5 Missense_Mutation p.V204A 0.49 deleterious(0.01) probably_damaging(0.981) TCGA-2W-A8YY-01 6 32552156 32552156 C T HLA-DRB1 Splice_Site p.X34_splice 0.16 TCGA-2W-A8YY-01 6 32629743 32629743 C T HLA-DQB1 Splice_Site p.X221_splice 0.34 TCGA-2W-A8YY-01 6 3264049 3264049 G T PSMG4 Intron 0.17 TCGA-2W-A8YY-01 6 3267832 3267832 G T PSMG4 Missense_Mutation p.K125N 0.36 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 6 3272824 3272824 C T SLC22A23 3'UTR 0.31 TCGA-2W-A8YY-01 6 3273286 3273286 G A SLC22A23 3'UTR 0.47 TCGA-2W-A8YY-01 6 32800220 32800220 G A TAP2 Nonsense_Mutation p.Q388* 0.15 TCGA-2W-A8YY-01 6 32800457 32800457 G A TAP2 Nonsense_Mutation p.Q364* 0.08 TCGA-2W-A8YY-01 6 32800519 32800519 C T TAP2 Missense_Mutation p.R343H 0.34 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 6 32802982 32802982 C T TAP2 Silent p.L298L 0.26 TCGA-2W-A8YY-01 6 32820249 32820249 C T TAP1 Missense_Mutation p.R270H 0.24 tolerated(0.07) benign(0.344) TCGA-2W-A8YY-01 6 32918455 32918455 C T HLA-DMA Missense_Mutation p.D72N 0.38 tolerated(0.25) benign(0.089) TCGA-2W-A8YY-01 6 32920785 32920785 G A HLA-DMA Missense_Mutation p.A10V 0.07 tolerated_low_confidence(0.25) benign(0.004) TCGA-2W-A8YY-01 6 32945760 32945760 G A BRD2 Missense_Mutation p.R519H 0.44 tolerated(0.06) probably_damaging(0.994) TCGA-2W-A8YY-01 6 3298433 3298433 G A SLC22A23 Missense_Mutation p.R368W 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 33048485 33048485 C T HLA-DPB1 Missense_Mutation p.A46V 0.59 deleterious(0.01) benign(0.042) TCGA-2W-A8YY-01 6 33137184 33137184 G A COL11A2 Silent p.G1172G 0.26 TCGA-2W-A8YY-01 6 33162572 33162572 G A RXRB Missense_Mutation p.R501W 0.49 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 33163974 33163974 A C RXRB Intron 0.39 TCGA-2W-A8YY-01 6 33232645 33232645 G A VPS52 Silent p.Y438Y 0.12 TCGA-2W-A8YY-01 6 33239446 33239446 C T VPS52 Missense_Mutation p.A3T 0.35 tolerated_low_confidence(0.18) unknown(0) TCGA-2W-A8YY-01 6 33244182 33244182 G A RPS18 Missense_Mutation p.G133D 0.45 deleterious(0) unknown(0) TCGA-2W-A8YY-01 6 33258012 33258012 C T PFDN6 Silent p.I42I 0.33 TCGA-2W-A8YY-01 6 33268051 33268051 G A TAPBP 3'Flank 0.40 TCGA-2W-A8YY-01 6 33380989 33380989 C T PHF1 Silent p.C118C 0.38 TCGA-2W-A8YY-01 6 33381192 33381192 G T PHF1 Missense_Mutation p.G149C 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 33411384 33411384 C T SYNGAP1 Missense_Mutation p.R1019C 0.33 deleterious(0) probably_damaging(0.939) TCGA-2W-A8YY-01 6 33419872 33419872 G A SYNGAP1 3'UTR 0.39 TCGA-2W-A8YY-01 6 33420290 33420290 G A SYNGAP1 3'UTR 0.50 TCGA-2W-A8YY-01 6 33423774 33423774 C T ZBTB9 Silent p.S299S 0.31 TCGA-2W-A8YY-01 6 33541204 33541204 C A BAK1 3'UTR 0.38 TCGA-2W-A8YY-01 6 33630699 33630699 C T ITPR3 Silent p.H290H 0.49 TCGA-2W-A8YY-01 6 33652237 33652237 G T ITPR3 Missense_Mutation p.D1681Y 0.39 deleterious(0.04) benign(0.036) TCGA-2W-A8YY-01 6 33656157 33656157 G A ITPR3 Missense_Mutation p.D2173N 0.26 tolerated(0.22) benign(0.062) TCGA-2W-A8YY-01 6 33663517 33663517 G A ITPR3 Missense_Mutation p.R2659H 0.33 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 6 33989938 33989939 - T GRM4 3'UTR 0.30 TCGA-2W-A8YY-01 6 34004074 34004074 C T GRM4 Missense_Mutation p.V605M 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 34029683 34029683 C T GRM4 Missense_Mutation p.E287K 0.55 tolerated(0.06) possibly_damaging(0.856) TCGA-2W-A8YY-01 6 34101158 34101158 T C GRM4 Missense_Mutation p.H39R 0.40 tolerated(0.08) benign(0.046) TCGA-2W-A8YY-01 6 34500220 34500220 C T PACSIN1 Silent p.G416G 0.30 TCGA-2W-A8YY-01 6 34730472 34730472 A G SNRPC Missense_Mutation p.D51G 0.38 deleterious(0) possibly_damaging(0.776) TCGA-2W-A8YY-01 6 34825161 34825161 G A UHRF1BP1 Missense_Mutation p.R496Q 0.37 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 6 34937907 34937907 C T ANKS1A Silent p.I133I 0.23 TCGA-2W-A8YY-01 6 35210008 35210008 G A SCUBE3 Missense_Mutation p.R482Q 0.26 tolerated(0.1) benign(0.048) TCGA-2W-A8YY-01 6 35217730 35217730 C A SCUBE3 3'UTR 0.49 TCGA-2W-A8YY-01 6 35254165 35254165 G A ZNF76 Missense_Mutation p.R74H 0.26 tolerated(1) benign(0) TCGA-2W-A8YY-01 6 35278357 35278357 G A DEF6 Missense_Mutation p.R120H 0.42 tolerated(0.06) benign(0.098) TCGA-2W-A8YY-01 6 35285742 35285742 C T DEF6 Silent p.A294A 0.33 TCGA-2W-A8YY-01 6 35287768 35287768 C T DEF6 Missense_Mutation p.R519W 0.34 deleterious(0) possibly_damaging(0.876) TCGA-2W-A8YY-01 6 35289050 35289050 C T DEF6 Missense_Mutation p.R587C 0.18 deleterious(0) benign(0.061) TCGA-2W-A8YY-01 6 35289082 35289082 G A DEF6 Silent p.S597S 0.24 TCGA-2W-A8YY-01 6 35387909 35387909 T C PPARD Missense_Mutation p.S46P 0.42 tolerated(0.11) benign(0) TCGA-2W-A8YY-01 6 35389619 35389619 G A PPARD Missense_Mutation p.R103H 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 35392495 35392495 C T PPARD Silent p.N339N 0.39 TCGA-2W-A8YY-01 6 35394142 35394142 C T PPARD 3'UTR 0.27 TCGA-2W-A8YY-01 6 35394458 35394458 G T PPARD 3'UTR 0.47 TCGA-2W-A8YY-01 6 35434099 35434099 G A FANCE Missense_Mutation p.A530T 0.29 tolerated(0.1) benign(0.391) TCGA-2W-A8YY-01 6 35441552 35441552 G A TEAD3 3'UTR 0.32 TCGA-2W-A8YY-01 6 35441617 35441617 G A TEAD3 3'UTR 0.33 TCGA-2W-A8YY-01 6 35442653 35442653 A G TEAD3 3'UTR 0.44 TCGA-2W-A8YY-01 6 35447092 35447092 G A TEAD3 Missense_Mutation p.A111V 0.30 tolerated(0.65) benign(0.023) TCGA-2W-A8YY-01 6 35465683 35465683 G A TULP1 3'UTR 0.27 TCGA-2W-A8YY-01 6 35466178 35466178 G A TULP1 Missense_Mutation p.R519W 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 35543048 35543048 C T FKBP5 3'UTR 0.55 TCGA-2W-A8YY-01 6 35604922 35604922 A G FKBP5 Missense_Mutation p.V40A 0.43 tolerated(0.34) benign(0) TCGA-2W-A8YY-01 6 35705861 35705861 T C ARMC12 Missense_Mutation p.L101P 0.41 deleterious(0) probably_damaging(0.947) TCGA-2W-A8YY-01 6 35918980 35918980 G A SLC26A8 Missense_Mutation p.S811F 0.20 deleterious(0.01) possibly_damaging(0.491) TCGA-2W-A8YY-01 6 35923270 35923270 T C SLC26A8 Missense_Mutation p.K631E 0.10 deleterious(0.01) possibly_damaging(0.685) TCGA-2W-A8YY-01 6 35965596 35965596 A C SLC26A8 Missense_Mutation p.F182L 0.27 deleterious(0.02) possibly_damaging(0.569) TCGA-2W-A8YY-01 6 35980078 35980078 C T SLC26A8 Missense_Mutation p.R87Q 0.26 tolerated(0.11) possibly_damaging(0.784) TCGA-2W-A8YY-01 6 35987433 35987433 G A SLC26A8 Nonsense_Mutation p.R18* 0.41 TCGA-2W-A8YY-01 6 35987442 35987442 T C SLC26A8 Missense_Mutation p.K15E 0.24 deleterious(0.01) possibly_damaging(0.524) TCGA-2W-A8YY-01 6 36044386 36044386 G A MAPK14 Splice_Site p.X228_splice 0.39 TCGA-2W-A8YY-01 6 36075237 36075237 G A MAPK14 Missense_Mutation p.D283N 0.40 tolerated(0.16) benign(0.156) TCGA-2W-A8YY-01 6 36076622 36076622 C T MAPK14 3'UTR 0.45 TCGA-2W-A8YY-01 6 36078091 36078091 G A MAPK14 3'UTR 0.27 TCGA-2W-A8YY-01 6 36078231 36078231 C T MAPK14 3'UTR 0.28 TCGA-2W-A8YY-01 6 36107127 36107127 C T MAPK13 Missense_Mutation p.R359C 0.31 deleterious(0) possibly_damaging(0.847) TCGA-2W-A8YY-01 6 36178148 36178148 T G BRPF3 Missense_Mutation p.I674M 0.41 tolerated(0.14) benign(0.42) TCGA-2W-A8YY-01 6 36178288 36178288 G A BRPF3 Missense_Mutation p.R721H 0.54 tolerated(0.2) benign(0.031) TCGA-2W-A8YY-01 6 36182043 36182043 G A BRPF3 Missense_Mutation p.A957T 0.43 tolerated(0.58) benign(0.003) TCGA-2W-A8YY-01 6 36182073 36182073 G A BRPF3 Missense_Mutation p.E967K 0.50 tolerated(0.35) benign(0.085) TCGA-2W-A8YY-01 6 36200322 36200322 G T BRPF3 3'UTR 0.37 TCGA-2W-A8YY-01 6 36200469 36200469 C A BRPF3 3'UTR 0.38 TCGA-2W-A8YY-01 6 36297956 36297956 G A C6orf222 Missense_Mutation p.A171V 0.40 tolerated(0.07) benign(0) TCGA-2W-A8YY-01 6 36483183 36483183 C A STK38 Missense_Mutation p.D201Y 0.38 deleterious(0) possibly_damaging(0.845) TCGA-2W-A8YY-01 6 36489568 36489568 C T STK38 Silent p.T111T 0.28 TCGA-2W-A8YY-01 6 36570793 36570793 C T SRSF3 3'UTR 0.38 TCGA-2W-A8YY-01 6 36653771 36653771 C T CDKN1A 3'UTR 0.45 TCGA-2W-A8YY-01 6 36654542 36654542 C T CDKN1A 3'UTR 0.31 TCGA-2W-A8YY-01 6 36698475 36698475 G A RAB44 Missense_Mutation p.C869Y 0.34 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 6 36867202 36867202 G T C6orf89 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0.04) benign(0.053) TCGA-2W-A8YY-01 6 37140778 37140778 G A PIM1 Missense_Mutation p.R205Q 0.36 deleterious(0.02) possibly_damaging(0.899) TCGA-2W-A8YY-01 6 37186253 37186253 G A TMEM217 Missense_Mutation p.S185L 0.36 tolerated(0.91) benign(0) TCGA-2W-A8YY-01 6 37247163 37247163 C T TBC1D22B Missense_Mutation p.T66I 0.49 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 6 37336291 37336291 G A RNF8 Missense_Mutation p.R91H 0.23 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 37358540 37358540 G A RNF8 3'UTR 0.36 TCGA-2W-A8YY-01 6 37411889 37411889 G A CMTR1 Missense_Mutation p.R83H 0.37 tolerated_low_confidence(0.07) benign(0.007) TCGA-2W-A8YY-01 6 37418065 37418065 T C CMTR1 Silent p.C161C 0.48 TCGA-2W-A8YY-01 6 37450950 37450950 G A CCDC167 3'UTR 0.50 TCGA-2W-A8YY-01 6 37602032 37602032 C T MDGA1 3'UTR 0.26 TCGA-2W-A8YY-01 6 37604545 37604545 G A MDGA1 3'UTR 0.38 TCGA-2W-A8YY-01 6 37626178 37626178 C T MDGA1 Silent p.T75T 0.52 TCGA-2W-A8YY-01 6 38561969 38561969 T A BTBD9 Missense_Mutation p.E107V 0.36 deleterious(0) unknown(0) TCGA-2W-A8YY-01 6 38645073 38645073 A G GLO1 Nonstop_Mutation p.*185Qext*80 0.39 TCGA-2W-A8YY-01 6 38690711 38690711 G A DNAH8 5'Flank 0.47 TCGA-2W-A8YY-01 6 38704963 38704963 T C DNAH8 Missense_Mutation p.S78P 0.10 benign(0.002) TCGA-2W-A8YY-01 6 38771034 38771034 T C DNAH8 Missense_Mutation p.I777T 0.50 benign(0.006) TCGA-2W-A8YY-01 6 38775395 38775395 G T DNAH8 Nonsense_Mutation p.E837* 0.38 TCGA-2W-A8YY-01 6 38818071 38818071 A G DNAH8 Missense_Mutation p.I1531M 0.28 probably_damaging(0.995) TCGA-2W-A8YY-01 6 38830135 38830135 G A DNAH8 Missense_Mutation p.E1854K 0.13 probably_damaging(1) TCGA-2W-A8YY-01 6 38840735 38840735 A C DNAH8 Missense_Mutation p.N2214H 0.45 probably_damaging(1) TCGA-2W-A8YY-01 6 38879259 38879259 A G DNAH8 Silent p.A3035A 0.18 TCGA-2W-A8YY-01 6 38998068 38998068 G A DNAH8 Missense_Mutation p.R4458Q 0.34 probably_damaging(1) TCGA-2W-A8YY-01 6 39053726 39053726 G A GLP1R Silent p.E423E 0.34 TCGA-2W-A8YY-01 6 39053804 39053804 G A GLP1R Silent p.A449A 0.39 TCGA-2W-A8YY-01 6 39054116 39054116 C T GLP1R 3'UTR 0.42 TCGA-2W-A8YY-01 6 39073355 39073355 G A SAYSD1 Silent p.Y135Y 0.12 TCGA-2W-A8YY-01 6 39157275 39157275 A G KCNK5 3'UTR 0.44 TCGA-2W-A8YY-01 6 39162078 39162078 G A KCNK5 Silent p.I167I 0.36 TCGA-2W-A8YY-01 6 39267431 39267431 G T KCNK17 Silent p.A257A 0.42 TCGA-2W-A8YY-01 6 39580993 39580993 A - KIF6 Frame_Shift_Del p.L204* 0.10 TCGA-2W-A8YY-01 6 39824206 39824206 C T DAAM2 Missense_Mutation p.P43L 0.34 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 39836639 39836639 G A DAAM2 Missense_Mutation p.R268Q 0.32 deleterious(0.03) probably_damaging(0.942) TCGA-2W-A8YY-01 6 39867871 39867871 C T DAAM2 Missense_Mutation p.R900C 0.43 deleterious(0.04) benign(0) TCGA-2W-A8YY-01 6 39867926 39867926 C T DAAM2 Missense_Mutation p.T918M 0.35 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 6 39869729 39869729 C T DAAM2 Silent p.C1041C 0.11 TCGA-2W-A8YY-01 6 39883895 39883895 A G MOCS1 Missense_Mutation p.L167P 0.30 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 6 40360321 40360321 C T LRFN2 Silent p.S577S 0.44 TCGA-2W-A8YY-01 6 4049262 4049262 C T PRPF4B Missense_Mutation p.R650W 0.37 deleterious(0) unknown(0) TCGA-2W-A8YY-01 6 4087426 4087426 C T C6orf201 Intron 0.43 TCGA-2W-A8YY-01 6 41029219 41029219 C T APOBEC2 Missense_Mutation p.A95V 0.39 tolerated(0.17) benign(0.01) TCGA-2W-A8YY-01 6 41031865 41031865 G T APOBEC2 3'UTR 0.41 TCGA-2W-A8YY-01 6 41048569 41048569 C A NFYA Missense_Mutation p.A32D 0.22 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 6 4125508 4125508 G A ECI2 Silent p.F257F 0.29 TCGA-2W-A8YY-01 6 41566790 41566790 C T FOXP4 3'UTR 0.44 TCGA-2W-A8YY-01 6 41606559 41606559 C T MDFI Silent p.G24G 0.32 TCGA-2W-A8YY-01 6 41658866 41658866 G T TFEB Missense_Mutation p.A29D 0.54 deleterious(0.04) unknown(0) TCGA-2W-A8YY-01 6 41738005 41738005 G T FRS3 3'UTR 0.25 TCGA-2W-A8YY-01 6 41754232 41754232 G A PRICKLE4 Intron 0.18 TCGA-2W-A8YY-01 6 41754784 41754784 C T PRICKLE4 Missense_Mutation p.R358C 0.31 deleterious(0) probably_damaging(0.972) TCGA-2W-A8YY-01 6 41773673 41773673 G A USP49 Missense_Mutation p.P350L 0.32 deleterious(0) probably_damaging(0.951) TCGA-2W-A8YY-01 6 41774647 41774647 G T USP49 Nonsense_Mutation p.C25* 0.64 TCGA-2W-A8YY-01 6 42044900 42044900 T C TAF8 Silent p.G281G 0.40 TCGA-2W-A8YY-01 6 42045427 42045427 C T TAF8 3'UTR 0.23 TCGA-2W-A8YY-01 6 42152572 42152572 C T GUCA1B Missense_Mutation p.R195Q 0.31 tolerated(0.13) benign(0.014) TCGA-2W-A8YY-01 6 42156345 42156345 C T GUCA1B Missense_Mutation p.R111H 0.27 tolerated(0.07) benign(0.128) TCGA-2W-A8YY-01 6 42196331 42196331 C T TRERF1 Missense_Mutation p.A1119T 0.45 deleterious(0.01) possibly_damaging(0.483) TCGA-2W-A8YY-01 6 42604784 42604784 C T UBR2 Silent p.L570L 0.55 TCGA-2W-A8YY-01 6 42611975 42611975 A G UBR2 Silent p.P707P 0.27 TCGA-2W-A8YY-01 6 42612251 42612251 T C UBR2 Missense_Mutation p.L754P 0.59 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 42646339 42646339 C A UBR2 Missense_Mutation p.P1514H 0.30 deleterious(0) probably_damaging(0.949) TCGA-2W-A8YY-01 6 42797235 42797235 T G GLTSCR1L Missense_Mutation p.H388Q 0.29 tolerated(0.32) possibly_damaging(0.777) TCGA-2W-A8YY-01 6 42797505 42797505 T C GLTSCR1L Silent p.F478F 0.24 TCGA-2W-A8YY-01 6 42833483 42833484 - T GLTSCR1L 3'UTR 0.25 TCGA-2W-A8YY-01 6 42834456 42834456 G A GLTSCR1L 3'UTR 0.30 TCGA-2W-A8YY-01 6 42930038 42930038 C T GNMT Missense_Mutation p.R99C 0.36 deleterious(0) probably_damaging(0.936) TCGA-2W-A8YY-01 6 42941773 42941773 C T PEX6 Silent p.E366E 0.48 TCGA-2W-A8YY-01 6 42979935 42979935 C T MEA1 3'UTR 0.14 TCGA-2W-A8YY-01 6 42986897 42986897 G A KLHDC3 Missense_Mutation p.D333N 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 42988652 42988652 T C KLHDC3 3'UTR 0.33 TCGA-2W-A8YY-01 6 43013361 43013361 C T CUL7 Nonsense_Mutation p.W1026* 0.26 TCGA-2W-A8YY-01 6 43015964 43015964 G A CUL7 Silent p.P781P 0.42 TCGA-2W-A8YY-01 6 43111241 43111241 G A PTK7 Missense_Mutation p.A720T 0.10 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 43147080 43147080 G A SRF 3'UTR 0.33 TCGA-2W-A8YY-01 6 43147138 43147138 G A SRF 3'UTR 0.41 TCGA-2W-A8YY-01 6 43147305 43147305 A G SRF 3'UTR 0.39 TCGA-2W-A8YY-01 6 43148337 43148337 G A SRF 3'UTR 0.47 TCGA-2W-A8YY-01 6 43171633 43171633 G A CUL9 Missense_Mutation p.R1356H 0.21 tolerated(0.07) possibly_damaging(0.459) TCGA-2W-A8YY-01 6 43190355 43190355 C T CUL9 Silent p.C2336C 0.49 TCGA-2W-A8YY-01 6 43254800 43254800 C T TTBK1 3'UTR 0.35 TCGA-2W-A8YY-01 6 43273768 43273768 T C CRIP3 Intron 0.29 TCGA-2W-A8YY-01 6 43274030 43274030 C T CRIP3 Missense_Mutation p.G141D 0.48 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 6 43304576 43304576 C T ZNF318 3'UTR 0.45 TCGA-2W-A8YY-01 6 43306986 43306986 T C ZNF318 Missense_Mutation p.K1584E 0.39 probably_damaging(0.986) TCGA-2W-A8YY-01 6 43307679 43307679 G A ZNF318 Missense_Mutation p.P1353S 0.40 probably_damaging(1) TCGA-2W-A8YY-01 6 43406480 43406480 G A ABCC10 Missense_Mutation p.A692T 0.32 tolerated(0.2) benign(0.032) TCGA-2W-A8YY-01 6 43466804 43466804 G A TJAP1 Missense_Mutation p.R22H 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 6 43472988 43472988 G A TJAP1 Missense_Mutation p.A357T 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 43483820 43483820 G A YIPF3 Missense_Mutation p.A32V 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 6 43484912 43484912 G A POLR1C Missense_Mutation p.R22H 0.31 tolerated(0.15) benign(0.023) TCGA-2W-A8YY-01 6 43488125 43488125 C T POLR1C Silent p.G205G 0.35 TCGA-2W-A8YY-01 6 43490539 43490539 C T XPO5 3'UTR 0.30 TCGA-2W-A8YY-01 6 43572456 43572456 C T POLH Missense_Mutation p.A330V 0.24 deleterious(0) probably_damaging(0.95) TCGA-2W-A8YY-01 6 43588475 43588475 C T GTPBP2 3'UTR 0.32 TCGA-2W-A8YY-01 6 43594060 43594060 C T GTPBP2 Missense_Mutation p.V101I 0.41 tolerated(1) benign(0.007) TCGA-2W-A8YY-01 6 43612968 43612968 C A RSPH9 Missense_Mutation p.L45I 0.38 deleterious(0.03) possibly_damaging(0.801) TCGA-2W-A8YY-01 6 43634213 43634213 T G RSPH9 Silent p.G226G 0.37 TCGA-2W-A8YY-01 6 44141056 44141056 C A CAPN11 Missense_Mutation p.P255H 0.27 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 6 44144035 44144035 C T CAPN11 Missense_Mutation p.P321S 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 44151844 44151844 G A CAPN11 3'UTR 0.53 TCGA-2W-A8YY-01 6 44198048 44198048 C T SLC29A1 Intron 0.31 TCGA-2W-A8YY-01 6 44198360 44198360 T C SLC29A1 Silent p.V215V 0.31 TCGA-2W-A8YY-01 6 44219505 44219505 G A HSP90AB1 Missense_Mutation p.R449H 0.37 tolerated(0.07) benign(0.118) TCGA-2W-A8YY-01 6 44227841 44227841 G A NFKBIE Missense_Mutation p.A459V 0.38 tolerated(0.08) possibly_damaging(0.905) TCGA-2W-A8YY-01 6 44254184 44254184 G A TCTE1 Silent p.T121T 0.28 TCGA-2W-A8YY-01 6 44274683 44274683 C T AARS2 Missense_Mutation p.V376I 0.47 deleterious(0.01) probably_damaging(0.976) TCGA-2W-A8YY-01 6 44988294 44988294 G A SUPT3H Missense_Mutation p.R99C 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 45516376 45516376 G T RUNX2 3'UTR 0.52 TCGA-2W-A8YY-01 6 45517641 45517641 C T RUNX2 3'UTR 0.40 TCGA-2W-A8YY-01 6 46107430 46107430 G A ENPP4 Missense_Mutation p.R37K 0.42 deleterious(0) probably_damaging(0.979) TCGA-2W-A8YY-01 6 46424557 46424557 T C RCAN2 Missense_Mutation p.N53D 0.57 tolerated(0.39) benign(0.066) TCGA-2W-A8YY-01 6 46517699 46517699 C A CYP39A1 3'UTR 0.29 TCGA-2W-A8YY-01 6 46517931 46517931 C A CYP39A1 3'UTR 0.32 TCGA-2W-A8YY-01 6 46656439 46656439 C T TDRD6 Missense_Mutation p.R192W 0.44 tolerated(0.09) benign(0.002) TCGA-2W-A8YY-01 6 46665782 46665782 T C TDRD6 Silent p.N2073N 0.33 TCGA-2W-A8YY-01 6 46719781 46719781 C A ANKRD66 Silent p.L87L 0.44 TCGA-2W-A8YY-01 6 46787435 46787435 C A MEP1A Missense_Mutation p.L184I 0.40 tolerated(0.92) benign(0.009) TCGA-2W-A8YY-01 6 46821722 46821722 C T GPR116 3'UTR 0.47 TCGA-2W-A8YY-01 6 46826095 46826095 A G GPR116 Missense_Mutation p.I1182T 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 46826468 46826468 C T GPR116 Missense_Mutation p.A1058T 0.49 deleterious(0.03) possibly_damaging(0.7) TCGA-2W-A8YY-01 6 46826790 46826790 G A GPR116 Silent p.G950G 0.37 TCGA-2W-A8YY-01 6 46828449 46828449 C A GPR116 Intron 0.27 TCGA-2W-A8YY-01 6 46847599 46847599 G A GPR116 Missense_Mutation p.S331L 0.32 tolerated(0.06) benign(0.177) TCGA-2W-A8YY-01 6 46976893 46976893 C T GPR110 Missense_Mutation p.V760I 0.08 tolerated(0.84) benign(0.01) TCGA-2W-A8YY-01 6 46977535 46977535 C T GPR110 Missense_Mutation p.D546N 0.30 tolerated(0.74) benign(0.003) TCGA-2W-A8YY-01 6 47199993 47199993 A - TNFRSF21 3'UTR 0.53 TCGA-2W-A8YY-01 6 47221087 47221087 C T TNFRSF21 Missense_Mutation p.E472K 0.36 deleterious(0.01) possibly_damaging(0.61) TCGA-2W-A8YY-01 6 47544758 47544758 T C CD2AP Silent p.C274C 0.37 TCGA-2W-A8YY-01 6 47576930 47576930 A C CD2AP Missense_Mutation p.E568D 0.37 tolerated(0.42) benign(0.012) TCGA-2W-A8YY-01 6 47661431 47661431 T C GPR115 5'Flank 0.39 TCGA-2W-A8YY-01 6 47754322 47754322 G A OPN5 Missense_Mutation p.A68T 0.34 tolerated(0.13) possibly_damaging(0.772) TCGA-2W-A8YY-01 6 48036155 48036155 G A PTCHD4 Silent p.S79S 0.48 TCGA-2W-A8YY-01 6 491184 491184 C T EXOC2 Silent p.A854A 0.30 TCGA-2W-A8YY-01 6 49419292 49419292 T A MUT Missense_Mutation p.N407Y 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-2W-A8YY-01 6 49483419 49483419 G A GLYATL3 Silent p.V44V 0.41 TCGA-2W-A8YY-01 6 49494217 49494217 C T GLYATL3 Nonsense_Mutation p.R153* 0.24 TCGA-2W-A8YY-01 6 497405 497405 G A EXOC2 Nonsense_Mutation p.Q841* 0.39 TCGA-2W-A8YY-01 6 49754390 49754390 G A PGK2 Missense_Mutation p.R171C 0.22 deleterious(0.02) possibly_damaging(0.881) TCGA-2W-A8YY-01 6 49754607 49754607 G T PGK2 Missense_Mutation p.D98E 0.46 tolerated(0.07) benign(0.365) TCGA-2W-A8YY-01 6 49803026 49803026 G A CRISP1 3'UTR 0.35 TCGA-2W-A8YY-01 6 50016304 50016304 T C DEFB112 Missense_Mutation p.T21A 0.34 deleterious(0.03) benign(0.217) TCGA-2W-A8YY-01 6 50805697 50805698 - A TFAP2B Frame_Shift_Ins p.N279Kfs*43 0.29 TCGA-2W-A8YY-01 6 5086727 5086727 C T PPP1R3G Silent p.G336G 0.43 TCGA-2W-A8YY-01 6 5086850 5086850 G A PPP1R3G 3'UTR 0.22 TCGA-2W-A8YY-01 6 51776717 51776717 C A PKHD1 Nonsense_Mutation p.E2124* 0.48 TCGA-2W-A8YY-01 6 52009159 52009159 C T MIR206 RNA 0.32 TCGA-2W-A8YY-01 6 52129534 52129534 G A MCM3 Missense_Mutation p.A805V 0.09 tolerated(0.32) benign(0.01) TCGA-2W-A8YY-01 6 52269223 52269223 G A PAQR8 3'UTR 0.43 TCGA-2W-A8YY-01 6 52269985 52269985 C T PAQR8 3'UTR 0.54 TCGA-2W-A8YY-01 6 5261095 5261095 C T LYRM4 5'UTR 0.29 TCGA-2W-A8YY-01 6 53133511 53133511 G A ELOVL5 3'Flank 0.36 TCGA-2W-A8YY-01 6 53133949 53133949 C T ELOVL5 Silent p.K319K 0.32 TCGA-2W-A8YY-01 6 53363135 53363135 T - GCLC 3'UTR 0.35 TCGA-2W-A8YY-01 6 53379018 53379018 C T GCLC Missense_Mutation p.G246D 0.12 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 53784396 53784396 G A LRRC1 Missense_Mutation p.D403N 0.41 deleterious(0.01) possibly_damaging(0.632) TCGA-2W-A8YY-01 6 53787922 53787922 C T LRRC1 3'UTR 0.50 TCGA-2W-A8YY-01 6 54214526 54214526 C T TINAG Silent p.H304H 0.21 TCGA-2W-A8YY-01 6 54806506 54806506 A G FAM83B Missense_Mutation p.T913A 0.21 tolerated(0.37) benign(0.001) TCGA-2W-A8YY-01 6 55223827 55223827 T C GFRAL Silent p.D281D 0.23 TCGA-2W-A8YY-01 6 55264034 55264034 A C GFRAL Missense_Mutation p.N337H 0.42 deleterious(0.01) benign(0.003) TCGA-2W-A8YY-01 6 556540 556540 C T EXOC2 Missense_Mutation p.V626M 0.11 tolerated(0.06) benign(0.036) TCGA-2W-A8YY-01 6 55922401 55922401 C T COL21A1 3'UTR 0.36 TCGA-2W-A8YY-01 6 55988900 55988900 C A COL21A1 Missense_Mutation p.R573I 0.29 tolerated(0.36) benign(0.11) TCGA-2W-A8YY-01 6 56324945 56324945 G A DST Silent p.V5079V 0.44 TCGA-2W-A8YY-01 6 56357832 56357832 T C DST Missense_Mutation p.D4194G 0.29 probably_damaging(0.999) TCGA-2W-A8YY-01 6 56422164 56422164 A C DST Missense_Mutation p.L2242V 0.42 probably_damaging(0.999) TCGA-2W-A8YY-01 6 56472653 56472653 C T DST Intron 0.34 TCGA-2W-A8YY-01 6 56476310 56476310 C A DST Missense_Mutation p.D1178Y 0.27 benign(0.444) TCGA-2W-A8YY-01 6 56480330 56480330 G T DST Intron 0.09 TCGA-2W-A8YY-01 6 56484193 56484193 C A DST Intron 0.35 TCGA-2W-A8YY-01 6 56494195 56494195 A G DST Missense_Mutation p.L906S 0.46 probably_damaging(0.976) TCGA-2W-A8YY-01 6 56501383 56501383 T C DST Missense_Mutation p.H474R 0.12 probably_damaging(0.999) TCGA-2W-A8YY-01 6 56501422 56501422 C T DST Nonsense_Mutation p.W461* 0.25 TCGA-2W-A8YY-01 6 56716260 56716260 G A RP11-472M19.2 Intron 0.18 TCGA-2W-A8YY-01 6 56846712 56846712 A G BEND6 Missense_Mutation p.D35G 0.18 tolerated_low_confidence(0.07) benign(0.002) TCGA-2W-A8YY-01 6 56879265 56879265 A C BEND6 Intron 0.42 TCGA-2W-A8YY-01 6 56918133 56918133 T C KIAA1586 Missense_Mutation p.V279A 0.39 tolerated(0.48) benign(0.124) TCGA-2W-A8YY-01 6 56965712 56965712 T C ZNF451 Intron 0.44 TCGA-2W-A8YY-01 6 56966128 56966128 G T ZNF451 Intron 0.17 TCGA-2W-A8YY-01 6 57054685 57054685 C T RAB23 3'UTR 0.09 TCGA-2W-A8YY-01 6 57244713 57244713 G T PRIM2 Missense_Mutation p.E158D 0.18 tolerated(0.11) benign(0.159) TCGA-2W-A8YY-01 6 619446 619446 T C EXOC2 Missense_Mutation p.N174D 0.30 deleterious(0.03) possibly_damaging(0.899) TCGA-2W-A8YY-01 6 6224961 6224961 G A F13A1 Missense_Mutation p.R311W 0.32 deleterious(0.02) possibly_damaging(0.782) TCGA-2W-A8YY-01 6 62390620 62390620 C A KHDRBS2 3'UTR 0.34 TCGA-2W-A8YY-01 6 6248636 6248636 A G F13A1 Missense_Mutation p.L236P 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 62995858 62995858 C T KHDRBS2 5'UTR 0.19 TCGA-2W-A8YY-01 6 64288916 64288916 C T PTP4A1 Silent p.C104C 0.31 TCGA-2W-A8YY-01 6 64290497 64290497 C T PTP4A1 3'UTR 0.33 TCGA-2W-A8YY-01 6 64394541 64394541 G A PHF3 Silent p.E306E 0.34 TCGA-2W-A8YY-01 6 64422404 64422404 G A PHF3 Silent p.A1640A 0.36 TCGA-2W-A8YY-01 6 65300838 65300838 A C EYS Nonsense_Mutation p.L1641* 0.50 TCGA-2W-A8YY-01 6 656841 656841 C T HUS1B Missense_Mutation p.R35H 0.44 deleterious(0.01) benign(0.21) TCGA-2W-A8YY-01 6 66044805 66044805 C T EYS Intron 0.38 TCGA-2W-A8YY-01 6 69349304 69349304 C T BAI3 Missense_Mutation p.A246V 0.12 tolerated(0.32) benign(0) TCGA-2W-A8YY-01 6 69665995 69665995 G A BAI3 Silent p.R425R 0.25 TCGA-2W-A8YY-01 6 69684670 69684670 G A BAI3 Missense_Mutation p.C514Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 6 69723951 69723951 A G BAI3 Missense_Mutation p.N651D 0.38 deleterious(0.03) possibly_damaging(0.751) TCGA-2W-A8YY-01 6 70409036 70409037 - A LMBRD1 Frame_Shift_Ins p.L413Sfs*13 0.28 TCGA-2W-A8YY-01 6 70428971 70428971 G A LMBRD1 Silent p.A213A 0.43 TCGA-2W-A8YY-01 6 70866076 70866076 G T COL19A1 Nonsense_Mutation p.E713* 0.38 TCGA-2W-A8YY-01 6 70875839 70875839 G A COL19A1 Missense_Mutation p.D803N 0.41 deleterious(0) possibly_damaging(0.55) TCGA-2W-A8YY-01 6 70926036 70926036 A G COL9A1 3'UTR 0.38 TCGA-2W-A8YY-01 6 70926111 70926111 T C COL9A1 3'UTR 0.16 TCGA-2W-A8YY-01 6 70966488 70966488 C T COL9A1 Missense_Mutation p.G496S 0.12 probably_damaging(0.998) TCGA-2W-A8YY-01 6 70992730 70992730 C A COL9A1 Intron 0.51 TCGA-2W-A8YY-01 6 71234243 71234243 G T FAM135A Nonsense_Mutation p.E486* 0.29 TCGA-2W-A8YY-01 6 71234710 71234710 C T FAM135A Silent p.D641D 0.40 TCGA-2W-A8YY-01 6 71235126 71235126 C T FAM135A Missense_Mutation p.A780V 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 71236244 71236244 T C FAM135A Silent p.L1153L 0.22 TCGA-2W-A8YY-01 6 71269491 71269491 G A FAM135A Missense_Mutation p.R1472H 0.48 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 71482902 71482902 C T SMAP1 Intron 0.25 TCGA-2W-A8YY-01 6 71566720 71566720 G A SMAP1 Silent p.Q316Q 0.40 TCGA-2W-A8YY-01 6 71571328 71571328 C T SMAP1 3'UTR 0.44 TCGA-2W-A8YY-01 6 71665871 71665871 T C B3GAT2 Missense_Mutation p.T88A 0.37 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 6 7246898 7246898 C T RREB1 Silent p.G1405G 0.45 TCGA-2W-A8YY-01 6 72889303 72889303 G A RIMS1 Missense_Mutation p.R166Q 0.33 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 6 7290074 7290074 C T SSR1 3'UTR 0.25 TCGA-2W-A8YY-01 6 7290088 7290088 A T SSR1 3'UTR 0.30 TCGA-2W-A8YY-01 6 72960677 72960677 G A RIMS1 Nonsense_Mutation p.W809* 0.42 TCGA-2W-A8YY-01 6 72960959 72960959 G A RIMS1 Silent p.P862P 0.34 TCGA-2W-A8YY-01 6 7301713 7301713 G A SSR1 Missense_Mutation p.R125C 0.33 deleterious(0) possibly_damaging(0.643) TCGA-2W-A8YY-01 6 73111347 73111347 A - RIMS1 3'Flank 0.21 TCGA-2W-A8YY-01 6 73111392 73111392 T C RIMS1 3'Flank 0.38 TCGA-2W-A8YY-01 6 73843172 73843172 C T KCNQ5 Missense_Mutation p.R445C 0.35 deleterious(0.02) benign(0.429) TCGA-2W-A8YY-01 6 73904342 73904342 T C KCNQ5 Silent p.G687G 0.38 TCGA-2W-A8YY-01 6 73933895 73933895 C T KHDC1L Missense_Mutation p.A97T 0.39 tolerated(0.2) benign(0.294) TCGA-2W-A8YY-01 6 7405506 7405506 C T RIOK1 Missense_Mutation p.A374V 0.43 deleterious(0.02) benign(0.182) TCGA-2W-A8YY-01 6 7411661 7411661 G A RIOK1 Missense_Mutation p.A456T 0.42 deleterious(0.05) possibly_damaging(0.616) TCGA-2W-A8YY-01 6 74138522 74138522 C T MB21D1 Missense_Mutation p.R376Q 0.41 deleterious(0) probably_damaging(0.944) TCGA-2W-A8YY-01 6 74468752 74468752 G T CD109 Splice_Site p.X253_splice 0.45 TCGA-2W-A8YY-01 6 74493548 74493548 G A CD109 Splice_Site p.X741_splice 0.37 TCGA-2W-A8YY-01 6 74521964 74521964 G A CD109 Missense_Mutation p.A1247T 0.33 deleterious(0) benign(0.107) TCGA-2W-A8YY-01 6 7563974 7563974 G T DSP Missense_Mutation p.E244D 0.11 benign(0.181) TCGA-2W-A8YY-01 6 7577238 7577238 T C DSP Missense_Mutation p.V947A 0.30 benign(0.42) TCGA-2W-A8YY-01 6 7579911 7579911 C T DSP Missense_Mutation p.A1163V 0.40 benign(0.001) TCGA-2W-A8YY-01 6 7580758 7580758 G A DSP Silent p.Q1445Q 0.63 TCGA-2W-A8YY-01 6 7581039 7581039 G T DSP Missense_Mutation p.R1539M 0.57 benign(0.299) TCGA-2W-A8YY-01 6 7583289 7583289 C T DSP Missense_Mutation p.R1932C 0.50 probably_damaging(0.997) TCGA-2W-A8YY-01 6 7584061 7584061 G A DSP Missense_Mutation p.R2189Q 0.40 benign(0.173) TCGA-2W-A8YY-01 6 7584618 7584618 G A DSP Missense_Mutation p.G2375R 0.18 probably_damaging(1) TCGA-2W-A8YY-01 6 76022941 76022941 C T FILIP1 Nonsense_Mutation p.W869* 0.34 TCGA-2W-A8YY-01 6 76538293 76538293 A G MYO6 Missense_Mutation p.H75R 0.35 deleterious(0) unknown(0) TCGA-2W-A8YY-01 6 76751690 76751690 A - IMPG1 Frame_Shift_Del p.F74Sfs*13 0.28 TCGA-2W-A8YY-01 6 78172392 78172392 C T HTR1B Silent p.T243T 0.30 TCGA-2W-A8YY-01 6 80625131 80625131 G T ELOVL4 3'UTR 0.46 TCGA-2W-A8YY-01 6 80626118 80626118 A T ELOVL4 3'UTR 0.27 TCGA-2W-A8YY-01 6 80721158 80721158 G A TTK Silent p.T207T 0.33 TCGA-2W-A8YY-01 6 80744994 80744994 A G TTK Missense_Mutation p.D595G 0.29 tolerated(0.09) benign(0.01) TCGA-2W-A8YY-01 6 8079906 8079906 C T EEF1E1 3'UTR 0.40 TCGA-2W-A8YY-01 6 82459795 82459795 T G FAM46A Silent p.R316R 0.29 TCGA-2W-A8YY-01 6 82881217 82881217 A G IBTK Silent p.P1329P 0.10 TCGA-2W-A8YY-01 6 82941511 82941511 C T IBTK Missense_Mutation p.G156D 0.09 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 82950098 82950098 A C IBTK Missense_Mutation p.F36V 0.30 deleterious(0) probably_damaging(0.928) TCGA-2W-A8YY-01 6 83732206 83732206 G A UBE3D Missense_Mutation p.T271M 0.24 deleterious(0.04) benign(0.064) TCGA-2W-A8YY-01 6 83810429 83810429 A G DOPEY1 Silent p.L48L 0.35 TCGA-2W-A8YY-01 6 83823123 83823123 C T DOPEY1 Missense_Mutation p.P255S 0.32 deleterious(0.01) benign(0.364) TCGA-2W-A8YY-01 6 83835303 83835303 T G DOPEY1 Missense_Mutation p.L524V 0.42 tolerated(0.17) possibly_damaging(0.665) TCGA-2W-A8YY-01 6 83845454 83845454 C T DOPEY1 Missense_Mutation p.P996L 0.18 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 6 83861627 83861627 C T DOPEY1 Missense_Mutation p.A1977V 0.42 deleterious(0) possibly_damaging(0.576) TCGA-2W-A8YY-01 6 84117518 84117518 T G ME1 Missense_Mutation p.N61H 0.08 deleterious(0.02) possibly_damaging(0.754) TCGA-2W-A8YY-01 6 84234354 84234354 G A PRSS35 Silent p.Q398Q 0.23 TCGA-2W-A8YY-01 6 84270615 84270615 A G SNAP91 Missense_Mutation p.S832P 0.26 tolerated(0.67) benign(0.015) TCGA-2W-A8YY-01 6 84302944 84302944 C T SNAP91 Silent p.A577A 0.39 TCGA-2W-A8YY-01 6 84566994 84566994 C T RIPPLY2 Silent p.Y91Y 0.34 TCGA-2W-A8YY-01 6 84567016 84567016 C T RIPPLY2 Missense_Mutation p.L99F 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 84573962 84573962 G A CYB5R4 Silent p.T48T 0.23 TCGA-2W-A8YY-01 6 84884658 84884658 A C KIAA1009 Missense_Mutation p.C605G 0.44 tolerated(0.34) benign(0.001) TCGA-2W-A8YY-01 6 86203653 86203653 T C NT5E Silent p.S552S 0.41 TCGA-2W-A8YY-01 6 86258064 86258064 C T SNX14 Silent p.L274L 0.53 TCGA-2W-A8YY-01 6 86283998 86283998 A T SNX14 Missense_Mutation p.F80Y 0.36 tolerated(0.28) benign(0.001) TCGA-2W-A8YY-01 6 86346734 86346734 G A SYNCRIP Missense_Mutation p.A206V 0.20 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 6 87964506 87964506 C T ZNF292 Missense_Mutation p.R387C 0.23 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 6 87965240 87965240 G A ZNF292 Silent p.E631E 0.41 TCGA-2W-A8YY-01 6 87969649 87969649 C T ZNF292 Missense_Mutation p.S2101F 0.27 tolerated(0.09) possibly_damaging(0.602) TCGA-2W-A8YY-01 6 87970133 87970133 C A ZNF292 Silent p.G2262G 0.35 TCGA-2W-A8YY-01 6 88074685 88074685 C T C6orf163 Silent p.A187A 0.50 TCGA-2W-A8YY-01 6 88107955 88107955 C A C6orf164 Missense_Mutation p.S8Y 0.17 deleterious_low_confidence(0) benign(0.003) TCGA-2W-A8YY-01 6 88251648 88251648 C A RARS2 Missense_Mutation p.Q200H 0.30 tolerated(0.06) benign(0.316) TCGA-2W-A8YY-01 6 88384874 88384874 C T AKIRIN2 3'UTR 0.27 TCGA-2W-A8YY-01 6 88385209 88385209 A G AKIRIN2 3'UTR 0.27 TCGA-2W-A8YY-01 6 88850140 88850140 G A CNR1 3'UTR 0.47 TCGA-2W-A8YY-01 6 88852927 88852927 C T CNR1 3'UTR 0.45 TCGA-2W-A8YY-01 6 88854974 88854974 C T CNR1 Missense_Mutation p.G7D 0.40 tolerated_low_confidence(0.06) possibly_damaging(0.859) TCGA-2W-A8YY-01 6 89321633 89321633 C T RNGTT 3'UTR 0.48 TCGA-2W-A8YY-01 6 89322043 89322043 A G RNGTT 3'UTR 0.43 TCGA-2W-A8YY-01 6 89322425 89322425 T C RNGTT 3'UTR 0.39 TCGA-2W-A8YY-01 6 89322454 89322454 G T RNGTT Missense_Mutation p.P593Q 0.30 tolerated(0.19) unknown(0) TCGA-2W-A8YY-01 6 89322526 89322526 G T RNGTT Missense_Mutation p.S569Y 0.38 tolerated(0.07) benign(0.032) TCGA-2W-A8YY-01 6 89638724 89638724 C A RNGTT Missense_Mutation p.R116I 0.39 deleterious(0.03) benign(0.015) TCGA-2W-A8YY-01 6 89808451 89808451 C T SRSF12 Missense_Mutation p.R211K 0.39 deleterious_low_confidence(0.01) benign(0) TCGA-2W-A8YY-01 6 89814953 89814953 G A SRSF12 Missense_Mutation p.R101C 0.43 deleterious(0) probably_damaging(0.952) TCGA-2W-A8YY-01 6 89874069 89874069 G A PM20D2 3'UTR 0.62 TCGA-2W-A8YY-01 6 89888767 89888767 C T GABRR1 Missense_Mutation p.G388R 0.35 deleterious(0.05) probably_damaging(0.963) TCGA-2W-A8YY-01 6 89890145 89890145 C T GABRR1 Missense_Mutation p.V338I 0.30 tolerated(0.6) probably_damaging(0.956) TCGA-2W-A8YY-01 6 89914407 89914407 C T GABRR1 Intron 0.11 TCGA-2W-A8YY-01 6 89975350 89975350 G A GABRR2 Missense_Mutation p.P291S 0.36 deleterious(0.05) probably_damaging(1) TCGA-2W-A8YY-01 6 89978921 89978921 G C GABRR2 Nonsense_Mutation p.Y107* 0.28 TCGA-2W-A8YY-01 6 90121654 90121654 T C RRAGD Missense_Mutation p.E20G 0.25 tolerated_low_confidence(0.09) benign(0.403) TCGA-2W-A8YY-01 6 90305712 90305712 C T ANKRD6 Silent p.C66C 0.30 TCGA-2W-A8YY-01 6 90312817 90312817 G A ANKRD6 Missense_Mutation p.E97K 0.33 tolerated(0.12) benign(0.23) TCGA-2W-A8YY-01 6 90333167 90333167 G T ANKRD6 Missense_Mutation p.Q312H 0.38 tolerated(0.11) benign(0.001) TCGA-2W-A8YY-01 6 90346891 90346891 T C LYRM2 3'UTR 0.25 TCGA-2W-A8YY-01 6 90359786 90359786 G T MDN1 Missense_Mutation p.A5388D 0.41 unknown(0) TCGA-2W-A8YY-01 6 90382327 90382327 T G MDN1 Missense_Mutation p.E4523D 0.11 benign(0) TCGA-2W-A8YY-01 6 90384088 90384088 G A MDN1 Nonsense_Mutation p.Q4328* 0.16 TCGA-2W-A8YY-01 6 90390337 90390337 C T MDN1 Missense_Mutation p.R4079H 0.15 benign(0) TCGA-2W-A8YY-01 6 90397797 90397797 C A MDN1 Missense_Mutation p.Q3785H 0.33 probably_damaging(0.986) TCGA-2W-A8YY-01 6 90402371 90402371 A G MDN1 Missense_Mutation p.C3460R 0.41 probably_damaging(0.961) TCGA-2W-A8YY-01 6 90411328 90411328 G A MDN1 Silent p.F2792F 0.42 TCGA-2W-A8YY-01 6 90457183 90457183 G A MDN1 Missense_Mutation p.R1257C 0.50 probably_damaging(1) TCGA-2W-A8YY-01 6 90466066 90466066 A T MDN1 Missense_Mutation p.L916I 0.42 probably_damaging(0.999) TCGA-2W-A8YY-01 6 90468058 90468058 C T MDN1 Missense_Mutation p.R873Q 0.34 probably_damaging(0.999) TCGA-2W-A8YY-01 6 90565253 90565253 T C CASP8AP2 RNA 0.27 TCGA-2W-A8YY-01 6 90572133 90572133 C T CASP8AP2 RNA 0.42 TCGA-2W-A8YY-01 6 90573097 90573097 A G CASP8AP2 RNA 0.41 TCGA-2W-A8YY-01 6 90573128 90573128 C A CASP8AP2 RNA 0.31 TCGA-2W-A8YY-01 6 90605422 90605422 G A GJA10 Missense_Mutation p.S412N 0.12 deleterious(0.04) benign(0.105) TCGA-2W-A8YY-01 6 90660598 90660598 C T BACH2 Silent p.S409S 0.56 TCGA-2W-A8YY-01 6 91278337 91278337 C T MAP3K7 Silent p.R79R 0.31 TCGA-2W-A8YY-01 6 96652045 96652045 C T FUT9 Silent p.C338C 0.39 TCGA-2W-A8YY-01 6 96653005 96653005 G T FUT9 3'UTR 0.29 TCGA-2W-A8YY-01 6 96659402 96659402 A - FUT9 3'UTR 0.30 TCGA-2W-A8YY-01 6 96662652 96662652 T C FUT9 3'UTR 0.57 TCGA-2W-A8YY-01 6 96663093 96663093 A G FUT9 3'UTR 0.37 TCGA-2W-A8YY-01 6 97246357 97246357 C T GPR63 Silent p.T417T 0.30 TCGA-2W-A8YY-01 6 97246358 97246358 G A GPR63 Missense_Mutation p.T417M 0.40 deleterious(0) possibly_damaging(0.72) TCGA-2W-A8YY-01 6 97246868 97246868 G A GPR63 Missense_Mutation p.S247F 0.55 tolerated(0.14) benign(0.01) TCGA-2W-A8YY-01 6 97561966 97561966 C A KLHL32 Missense_Mutation p.P312H 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 6 97562259 97562259 C T KLHL32 Missense_Mutation p.R410C 0.43 deleterious(0.05) benign(0.021) TCGA-2W-A8YY-01 6 97586994 97586994 T C KLHL32 Intron 0.40 TCGA-2W-A8YY-01 6 97597768 97597768 G A MMS22L Missense_Mutation p.S1204L 0.42 tolerated(0.16) probably_damaging(0.99) TCGA-2W-A8YY-01 6 99285684 99285684 A G POU3F2 3'UTR 0.42 TCGA-2W-A8YY-01 6 99285771 99285771 C T POU3F2 3'UTR 0.52 TCGA-2W-A8YY-01 6 99286239 99286239 G A POU3F2 3'UTR 0.48 TCGA-2W-A8YY-01 6 99353502 99353502 A G FBXL4 Silent p.C301C 0.16 TCGA-2W-A8YY-01 6 99781237 99781237 G C FAXC Missense_Mutation p.H197D 0.18 deleterious(0.02) possibly_damaging(0.885) TCGA-2W-A8YY-01 6 99828169 99828169 G A COQ3 Silent p.S94S 0.30 TCGA-2W-A8YY-01 6 99849006 99849006 G A PNISR Missense_Mutation p.R610W 0.46 tolerated_low_confidence(0.08) possibly_damaging(0.835) TCGA-2W-A8YY-01 6 99862533 99862533 C T PNISR Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-2W-A8YY-01 6 99991077 99991077 G T CCNC 3'UTR 0.27 TCGA-2W-A8YY-01 6 99991096 99991096 C T CCNC 3'UTR 0.32 TCGA-2W-A8YY-01 7 100014064 100014064 A G ZCWPW1 Silent p.H165H 0.34 TCGA-2W-A8YY-01 7 100017447 100017447 A G ZCWPW1 Silent p.L30L 0.27 TCGA-2W-A8YY-01 7 100028729 100028729 G A MEPCE Missense_Mutation p.R363H 0.47 deleterious(0.05) possibly_damaging(0.662) TCGA-2W-A8YY-01 7 100031361 100031361 G A MEPCE 3'UTR 0.34 TCGA-2W-A8YY-01 7 100075385 100075385 C T TSC22D4 Missense_Mutation p.V93M 0.29 tolerated(0.41) possibly_damaging(0.81) TCGA-2W-A8YY-01 7 100082876 100082876 C - NYAP1 5'UTR 0.19 TCGA-2W-A8YY-01 7 100146467 100146467 C T AGFG2 Missense_Mutation p.R82C 0.36 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 100160224 100160224 G A AGFG2 Missense_Mutation p.G336R 0.21 tolerated(0.06) benign(0.049) TCGA-2W-A8YY-01 7 100165172 100165172 G A AGFG2 3'UTR 0.57 TCGA-2W-A8YY-01 7 100172777 100172777 G T LRCH4 Missense_Mutation p.L669I 0.15 tolerated(0.24) unknown(0) TCGA-2W-A8YY-01 7 100174575 100174575 G A LRCH4 Missense_Mutation p.A473V 0.38 tolerated(0.08) benign(0.006) TCGA-2W-A8YY-01 7 100175827 100175827 G A LRCH4 Silent p.G301G 0.35 TCGA-2W-A8YY-01 7 100179714 100179714 G A LRCH4 Silent p.L148L 0.36 TCGA-2W-A8YY-01 7 100187469 100187469 G T FBXO24 Intron 0.46 TCGA-2W-A8YY-01 7 100197752 100197752 C T FBXO24 Silent p.C473C 0.14 TCGA-2W-A8YY-01 7 100210282 100210282 C T MOSPD3 5'UTR 0.29 TCGA-2W-A8YY-01 7 100210442 100210442 G A MOSPD3 Missense_Mutation p.E10K 0.33 deleterious_low_confidence(0.01) benign(0.242) TCGA-2W-A8YY-01 7 100278149 100278149 C T GIGYF1 3'UTR 0.29 TCGA-2W-A8YY-01 7 100284370 100284370 C T GIGYF1 Missense_Mutation p.R199H 0.12 deleterious(0) unknown(0) TCGA-2W-A8YY-01 7 100365496 100365496 G T ZAN Missense_Mutation p.G1635C 0.35 unknown(0) TCGA-2W-A8YY-01 7 100382345 100382345 C A ZAN Silent p.P2240P 0.10 TCGA-2W-A8YY-01 7 100386864 100386864 C T ZAN Missense_Mutation p.P2417S 0.29 unknown(0) TCGA-2W-A8YY-01 7 100388620 100388620 G A ZAN Missense_Mutation p.D2471N 0.24 unknown(0) TCGA-2W-A8YY-01 7 100395076 100395076 G A ZAN Silent p.T2693T 0.43 TCGA-2W-A8YY-01 7 100401117 100401117 G A EPHB4 Missense_Mutation p.P977L 0.23 deleterious(0) benign(0.002) TCGA-2W-A8YY-01 7 100404179 100404179 G A EPHB4 Missense_Mutation p.P783S 0.37 deleterious(0.01) probably_damaging(0.984) TCGA-2W-A8YY-01 7 100410393 100410393 G A EPHB4 Silent p.N698N 0.36 TCGA-2W-A8YY-01 7 100414973 100414973 C T EPHB4 Missense_Mutation p.E477K 0.48 tolerated(0.1) possibly_damaging(0.593) TCGA-2W-A8YY-01 7 100420006 100420006 C T EPHB4 Missense_Mutation p.G232D 0.33 tolerated(0.62) benign(0.021) TCGA-2W-A8YY-01 7 100454684 100454684 G A SLC12A9 Missense_Mutation p.G215R 0.13 tolerated(0.19) benign(0.018) TCGA-2W-A8YY-01 7 100458870 100458870 G A SLC12A9 Silent p.S443S 0.42 TCGA-2W-A8YY-01 7 100484023 100484023 G A SRRT Nonsense_Mutation p.W538* 0.57 TCGA-2W-A8YY-01 7 100484550 100484550 G A SRRT Silent p.P594P 0.39 TCGA-2W-A8YY-01 7 100490062 100490062 G A ACHE Silent p.I482I 0.40 TCGA-2W-A8YY-01 7 100491790 100491790 G T ACHE Missense_Mutation p.L22I 0.56 tolerated(0.24) benign(0.012) TCGA-2W-A8YY-01 7 100609822 100609822 G T MUC3A Missense_Mutation p.R821M 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-2W-A8YY-01 7 100610292 100610292 G A MUC3A Missense_Mutation p.E870K 0.12 deleterious(0) probably_damaging(0.945) TCGA-2W-A8YY-01 7 100648263 100648263 A C MUC12 Missense_Mutation p.T4807P 0.35 possibly_damaging(0.711) TCGA-2W-A8YY-01 7 100675037 100675037 G A MUC17 Missense_Mutation p.E114K 0.53 benign(0.008) TCGA-2W-A8YY-01 7 100679975 100679975 C T MUC17 Missense_Mutation p.P1760S 0.19 possibly_damaging(0.684) TCGA-2W-A8YY-01 7 100680192 100680192 C T MUC17 Missense_Mutation p.P1832L 0.45 possibly_damaging(0.713) TCGA-2W-A8YY-01 7 100680481 100680481 A G MUC17 Silent p.L1928L 0.44 TCGA-2W-A8YY-01 7 100681218 100681218 C T MUC17 Missense_Mutation p.A2174V 0.43 unknown(0) TCGA-2W-A8YY-01 7 100732424 100732424 G A TRIM56 Missense_Mutation p.V611M 0.43 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 7 100777167 100777167 C T SERPINE1 Silent p.L298L 0.50 TCGA-2W-A8YY-01 7 100852227 100852227 G A PLOD3 Silent p.D565D 0.42 TCGA-2W-A8YY-01 7 100862013 100862013 A C ZNHIT1 Intron 0.48 TCGA-2W-A8YY-01 7 100877668 100877668 G A CLDN15 Silent p.L91L 0.52 TCGA-2W-A8YY-01 7 101183220 101183220 A G COL26A1 Missense_Mutation p.D165G 0.43 tolerated(0.09) benign(0.016) TCGA-2W-A8YY-01 7 101199110 101199110 G A COL26A1 Missense_Mutation p.A375T 0.58 deleterious(0) possibly_damaging(0.632) TCGA-2W-A8YY-01 7 101821869 101821869 C T CUX1 Missense_Mutation p.R328W 0.09 deleterious(0) unknown(0) TCGA-2W-A8YY-01 7 101844876 101844876 C T CUX1 Missense_Mutation p.P778S 0.55 tolerated(0.33) unknown(0) TCGA-2W-A8YY-01 7 101923410 101923410 C T SH2B2 5'Flank 0.35 TCGA-2W-A8YY-01 7 101928479 101928479 C A SH2B2 Silent p.G10G 0.30 TCGA-2W-A8YY-01 7 101944379 101944379 C T SH2B2 Missense_Mutation p.S225L 0.44 deleterious(0.03) possibly_damaging(0.503) TCGA-2W-A8YY-01 7 102087414 102087414 C T ORAI2 Missense_Mutation p.T227M 0.39 tolerated(0.22) probably_damaging(0.998) TCGA-2W-A8YY-01 7 102087433 102087433 G T ORAI2 Missense_Mutation p.E233D 0.29 tolerated(0.63) probably_damaging(0.956) TCGA-2W-A8YY-01 7 102194878 102194878 C A SPDYE2 Missense_Mutation p.S78Y 0.14 tolerated(0.09) probably_damaging(0.992) TCGA-2W-A8YY-01 7 102738803 102738803 C T ARMC10 Nonsense_Mutation p.R279* 0.30 TCGA-2W-A8YY-01 7 102967099 102967099 G A DNAJC2 Nonsense_Mutation p.R155* 0.29 TCGA-2W-A8YY-01 7 102978129 102978129 C T DNAJC2 Intron 0.31 TCGA-2W-A8YY-01 7 103033465 103033465 G A SLC26A5 Silent p.Y340Y 0.45 TCGA-2W-A8YY-01 7 103130205 103130205 G A RELN Silent p.C3249C 0.21 TCGA-2W-A8YY-01 7 103151359 103151359 C T RELN Missense_Mutation p.R2738Q 0.41 tolerated(0.08) probably_damaging(0.973) TCGA-2W-A8YY-01 7 103180895 103180895 G A RELN Nonsense_Mutation p.Q2227* 0.61 TCGA-2W-A8YY-01 7 103183240 103183240 G T RELN Silent p.L2203L 0.31 TCGA-2W-A8YY-01 7 103244810 103244810 G A RELN Silent p.C1043C 0.33 TCGA-2W-A8YY-01 7 103341439 103341439 G A RELN Missense_Mutation p.R274C 0.36 deleterious(0.01) possibly_damaging(0.549) TCGA-2W-A8YY-01 7 103368595 103368595 G A RELN Missense_Mutation p.A239V 0.43 deleterious(0.02) possibly_damaging(0.679) TCGA-2W-A8YY-01 7 103557549 103557549 T C RELN Missense_Mutation p.I104V 0.39 tolerated(0.84) benign(0.001) TCGA-2W-A8YY-01 7 103824620 103824620 C A ORC5 Splice_Site p.X229_splice 0.35 TCGA-2W-A8YY-01 7 104719387 104719387 C T KMT2E Missense_Mutation p.R409W 0.39 deleterious(0) possibly_damaging(0.898) TCGA-2W-A8YY-01 7 104731690 104731691 - A KMT2E Frame_Shift_Ins p.T553Nfs*4 0.26 TCGA-2W-A8YY-01 7 104754005 104754005 T - KMT2E 3'UTR 0.36 TCGA-2W-A8YY-01 7 104754332 104754332 C T KMT2E 3'UTR 0.31 TCGA-2W-A8YY-01 7 105192069 105192069 G A RINT1 Silent p.S462S 0.40 TCGA-2W-A8YY-01 7 105401689 105401689 G A ATXN7L1 Intron 0.60 TCGA-2W-A8YY-01 7 105641973 105641973 C T CDHR3 Missense_Mutation p.A260V 0.30 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 7 105731059 105731059 C A SYPL1 3'UTR 0.25 TCGA-2W-A8YY-01 7 105894900 105894900 G A NAMPT Silent p.F380F 0.22 TCGA-2W-A8YY-01 7 106508686 106508686 G T PIK3CG Missense_Mutation p.S227I 0.43 deleterious(0.04) possibly_damaging(0.781) TCGA-2W-A8YY-01 7 106509441 106509441 G T PIK3CG Nonsense_Mutation p.E479* 0.39 TCGA-2W-A8YY-01 7 106509880 106509880 G A PIK3CG Missense_Mutation p.G625E 0.41 tolerated(0.56) benign(0.173) TCGA-2W-A8YY-01 7 106791402 106791402 C T PRKAR2B Silent p.N259N 0.23 TCGA-2W-A8YY-01 7 106842312 106842312 G T COG5 3'Flank 0.19 TCGA-2W-A8YY-01 7 106851567 106851567 C T COG5 Missense_Mutation p.A789T 0.29 tolerated(0.1) benign(0.017) TCGA-2W-A8YY-01 7 107115505 107115505 A G GPR22 Missense_Mutation p.T334A 0.33 deleterious(0.04) possibly_damaging(0.527) TCGA-2W-A8YY-01 7 107330597 107330597 T C SLC26A4 Missense_Mutation p.I393T 0.28 deleterious(0) possibly_damaging(0.555) TCGA-2W-A8YY-01 7 107336394 107336394 C T SLC26A4 Missense_Mutation p.T485M 0.32 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 7 107350528 107350528 G A SLC26A4 Missense_Mutation p.G707R 0.27 tolerated(0.49) possibly_damaging(0.668) TCGA-2W-A8YY-01 7 107398802 107398802 C T CBLL1 Missense_Mutation p.R219C 0.44 tolerated(0.2) benign(0.008) TCGA-2W-A8YY-01 7 107704293 107704293 G T LAMB4 Missense_Mutation p.L992I 0.29 tolerated(0.06) possibly_damaging(0.715) TCGA-2W-A8YY-01 7 107743630 107743630 T C LAMB4 Missense_Mutation p.T347A 0.38 tolerated(0.36) benign(0.001) TCGA-2W-A8YY-01 7 107745059 107745059 G A LAMB4 Silent p.H292H 0.38 TCGA-2W-A8YY-01 7 107824895 107824895 G A NRCAM Silent p.S733S 0.30 TCGA-2W-A8YY-01 7 108137995 108137995 C T PNPLA8 Missense_Mutation p.R462Q 0.24 tolerated(0.12) benign(0.362) TCGA-2W-A8YY-01 7 108204833 108204833 A G THAP5 Silent p.N330N 0.38 TCGA-2W-A8YY-01 7 108206293 108206293 G A THAP5 Missense_Mutation p.S85F 0.31 deleterious(0.05) probably_damaging(0.924) TCGA-2W-A8YY-01 7 1097712 1097712 C T GPR146 Silent p.A187A 0.43 TCGA-2W-A8YY-01 7 11076283 11076283 C T PHF14 Missense_Mutation p.A614V 0.09 deleterious(0) possibly_damaging(0.696) TCGA-2W-A8YY-01 7 110764525 110764525 C T LRRN3 Missense_Mutation p.A566V 0.34 tolerated(0.11) benign(0.026) TCGA-2W-A8YY-01 7 111368223 111368223 G A DOCK4 3'Flank 0.40 TCGA-2W-A8YY-01 7 11142356 11142356 C T PHF14 3'UTR 0.42 TCGA-2W-A8YY-01 7 111535684 111535684 T A DOCK4 Missense_Mutation p.E524V 0.40 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 7 112115558 112115558 T C IFRD1 Missense_Mutation p.V447A 0.13 tolerated(0.06) benign(0.136) TCGA-2W-A8YY-01 7 112406991 112406991 A C TMEM168 3'UTR 0.33 TCGA-2W-A8YY-01 7 112461181 112461182 - C C7orf60 3'UTR 0.30 TCGA-2W-A8YY-01 7 112724398 112724398 G A GPR85 Missense_Mutation p.R127C 0.52 deleterious(0) possibly_damaging(0.49) TCGA-2W-A8YY-01 7 112724717 112724717 G T GPR85 Silent p.A20A 0.37 TCGA-2W-A8YY-01 7 1131189 1131189 C T GPER1 5'UTR 0.30 TCGA-2W-A8YY-01 7 1131836 1131836 G A GPER1 Missense_Mutation p.A158T 0.30 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 7 113558403 113558403 T C PPP1R3A Missense_Mutation p.T217A 0.43 deleterious(0) possibly_damaging(0.641) TCGA-2W-A8YY-01 7 113558961 113558961 C T PPP1R3A Missense_Mutation p.V31I 0.36 tolerated(0.12) benign(0.049) TCGA-2W-A8YY-01 7 11415364 11415364 C T THSD7A 3'UTR 0.19 TCGA-2W-A8YY-01 7 11415401 11415401 T C THSD7A 3'UTR 0.26 TCGA-2W-A8YY-01 7 11415465 11415465 G T THSD7A Missense_Mutation p.L1644M 0.40 tolerated(0.15) probably_damaging(0.997) TCGA-2W-A8YY-01 7 11419308 11419308 G A THSD7A Silent p.A1513A 0.23 TCGA-2W-A8YY-01 7 114563548 114563548 C A MDFIC Intron 0.32 TCGA-2W-A8YY-01 7 114657759 114657759 C T MDFIC 3'UTR 0.50 TCGA-2W-A8YY-01 7 115898448 115898448 G A TES 3'UTR 0.54 TCGA-2W-A8YY-01 7 116147060 116147060 C A CAV2 3'UTR 0.47 TCGA-2W-A8YY-01 7 116165128 116165128 C G CAV1 Silent p.G4G 0.30 TCGA-2W-A8YY-01 7 116166521 116166521 C T CAV1 Intron 0.40 TCGA-2W-A8YY-01 7 116199584 116199584 A G CAV1 3'UTR 0.53 TCGA-2W-A8YY-01 7 116201006 116201006 C A CAV1 3'UTR 0.33 TCGA-2W-A8YY-01 7 116340308 116340308 C T MET Silent p.Y390Y 0.50 TCGA-2W-A8YY-01 7 116381018 116381018 G A MET Missense_Mutation p.R547Q 0.41 tolerated(0.05) benign(0.007) TCGA-2W-A8YY-01 7 116528186 116528186 T C CAPZA2 Silent p.R15R 0.39 TCGA-2W-A8YY-01 7 116595197 116595197 G A ST7-OT4 Missense_Mutation p.R20H 0.32 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-2W-A8YY-01 7 1166957 1166957 G A C7orf50 Missense_Mutation p.A22V 0.11 tolerated(1) benign(0) TCGA-2W-A8YY-01 7 117120088 117120088 C A CFTR 5'UTR 0.31 TCGA-2W-A8YY-01 7 117375451 117375451 G T CTTNBP2 Missense_Mutation p.S1187Y 0.42 deleterious(0.02) benign(0.288) TCGA-2W-A8YY-01 7 117385902 117385902 T C CTTNBP2 Missense_Mutation p.D1173G 0.10 tolerated(0.06) benign(0.009) TCGA-2W-A8YY-01 7 117828391 117828391 A G NAA38 Silent p.R44R 0.33 TCGA-2W-A8YY-01 7 1191884 1191884 G A ZFAND2A 3'Flank 0.41 TCGA-2W-A8YY-01 7 1192727 1192727 C T ZFAND2A Missense_Mutation p.R139H 0.33 tolerated(0.91) benign(0.002) TCGA-2W-A8YY-01 7 119915461 119915461 C T KCND2 Missense_Mutation p.R259C 0.47 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 7 120496772 120496772 C T TSPAN12 Missense_Mutation p.A16T 0.42 tolerated(0.24) probably_damaging(0.978) TCGA-2W-A8YY-01 7 120614790 120614790 A G ING3 Missense_Mutation p.I383M 0.11 tolerated(0.06) probably_damaging(0.991) TCGA-2W-A8YY-01 7 120765918 120765918 G A CPED1 Missense_Mutation p.G369D 0.41 tolerated(0.15) possibly_damaging(0.603) TCGA-2W-A8YY-01 7 120965504 120965504 T C WNT16 5'Flank 0.35 TCGA-2W-A8YY-01 7 121011462 121011462 C A FAM3C Missense_Mutation p.R55I 0.41 deleterious(0) benign(0.211) TCGA-2W-A8YY-01 7 121019011 121019011 G T FAM3C Missense_Mutation p.S24Y 0.49 tolerated(0.91) benign(0.093) TCGA-2W-A8YY-01 7 121616844 121616844 G A PTPRZ1 Silent p.G186G 0.39 TCGA-2W-A8YY-01 7 121650421 121650421 G A PTPRZ1 Missense_Mutation p.A441T 0.45 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 7 121651511 121651511 A G PTPRZ1 Missense_Mutation p.D804G 0.15 tolerated_low_confidence(0.44) benign(0.002) TCGA-2W-A8YY-01 7 121652219 121652219 C T PTPRZ1 Missense_Mutation p.A1040V 0.47 tolerated_low_confidence(1) benign(0) TCGA-2W-A8YY-01 7 121653197 121653197 C A PTPRZ1 Missense_Mutation p.S1366Y 0.41 deleterious_low_confidence(0) benign(0.372) TCGA-2W-A8YY-01 7 121738518 121738518 C A AASS Missense_Mutation p.Q547H 0.38 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 7 121756757 121756757 G A AASS Missense_Mutation p.T275I 0.27 tolerated(0.23) possibly_damaging(0.723) TCGA-2W-A8YY-01 7 121941987 121941987 G A FEZF1 3'UTR 0.39 TCGA-2W-A8YY-01 7 121943878 121943878 A G FEZF1 Missense_Mutation p.V205A 0.29 tolerated(0.8) benign(0.315) TCGA-2W-A8YY-01 7 122194638 122194638 G A CADPS2 Nonsense_Mutation p.R481* 0.34 TCGA-2W-A8YY-01 7 122338164 122338164 C T RNF133 Missense_Mutation p.R270H 0.24 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 122342440 122342440 T - RNF148 Frame_Shift_Del p.K122Rfs*6 0.13 TCGA-2W-A8YY-01 7 122811938 122811938 C T SLC13A1 Silent p.K83K 0.39 TCGA-2W-A8YY-01 7 123152119 123152119 C T IQUB Silent p.P92P 0.09 TCGA-2W-A8YY-01 7 123197482 123197482 C T NDUFA5 Silent p.L14L 0.30 TCGA-2W-A8YY-01 7 123276893 123276893 G A ASB15 Missense_Mutation p.R542Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 7 123302911 123302911 C A LMOD2 Missense_Mutation p.P424H 0.24 deleterious(0) benign(0.319) TCGA-2W-A8YY-01 7 12433321 12433321 A G VWDE Missense_Mutation p.S48P 0.35 tolerated(0.06) benign(0.022) TCGA-2W-A8YY-01 7 124386281 124386282 - A GPR37 3'UTR 0.23 TCGA-2W-A8YY-01 7 124386530 124386530 G A GPR37 3'UTR 0.54 TCGA-2W-A8YY-01 7 124387038 124387038 G T GPR37 Nonsense_Mutation p.C461* 0.26 TCGA-2W-A8YY-01 7 124404189 124404189 G A GPR37 Missense_Mutation p.A281V 0.43 deleterious(0.02) possibly_damaging(0.823) TCGA-2W-A8YY-01 7 124404344 124404344 G A GPR37 Silent p.I229I 0.46 TCGA-2W-A8YY-01 7 124464092 124464092 T C POT1 Missense_Mutation p.Y610C 0.27 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 7 124783372 124783372 C A POT1-AS1 RNA 0.43 TCGA-2W-A8YY-01 7 126173699 126173699 C T GRM8 Nonsense_Mutation p.W579* 0.09 TCGA-2W-A8YY-01 7 126249458 126249458 C T GRM8 Silent p.E484E 0.32 TCGA-2W-A8YY-01 7 127010442 127010442 A G ZNF800 3'UTR 0.43 TCGA-2W-A8YY-01 7 127222662 127222662 T G GCC1 Silent p.T578T 0.46 TCGA-2W-A8YY-01 7 127254550 127254550 C T PAX4 Missense_Mutation p.R133Q 0.31 tolerated(1) benign(0) TCGA-2W-A8YY-01 7 1273249 1273249 C T UNCX Missense_Mutation p.A123V 0.09 tolerated(0.06) probably_damaging(0.96) TCGA-2W-A8YY-01 7 127670436 127670436 G A LRRC4 Silent p.N86N 0.38 TCGA-2W-A8YY-01 7 127721503 127721503 T G SND1 Missense_Mutation p.V687G 0.46 deleterious(0) probably_damaging(0.973) TCGA-2W-A8YY-01 7 127894625 127894625 C T LEP Missense_Mutation p.R105W 0.23 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 7 127978303 127978303 C T RBM28 Splice_Site p.X181_splice 0.42 TCGA-2W-A8YY-01 7 127983921 127983921 T C RBM28 5'UTR 0.27 TCGA-2W-A8YY-01 7 127992706 127992706 C A PRRT4 Missense_Mutation p.D302Y 0.36 tolerated_low_confidence(0.09) unknown(0) TCGA-2W-A8YY-01 7 127999660 127999660 G A PRRT4 Missense_Mutation p.P129L 0.49 tolerated_low_confidence(0.76) unknown(0) TCGA-2W-A8YY-01 7 128312449 128312449 C T FAM71F2 5'UTR 0.52 TCGA-2W-A8YY-01 7 128317636 128317636 C T FAM71F2 Silent p.Y128Y 0.34 TCGA-2W-A8YY-01 7 128370025 128370025 A G FAM71F1 Missense_Mutation p.Y308C 0.43 tolerated(0.08) benign(0.002) TCGA-2W-A8YY-01 7 128407652 128407652 C T CALU Silent p.D270D 0.42 TCGA-2W-A8YY-01 7 128410209 128410209 G A CALU 3'UTR 0.26 TCGA-2W-A8YY-01 7 128490115 128490115 G A FLNC Missense_Mutation p.R1762H 0.39 tolerated(0.53) benign(0.004) TCGA-2W-A8YY-01 7 128492785 128492785 C T FLNC Missense_Mutation p.R1995C 0.45 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 7 128498553 128498553 C T FLNC Silent p.S2718S 0.13 TCGA-2W-A8YY-01 7 128528954 128528954 T C KCP RNA 0.42 TCGA-2W-A8YY-01 7 128534269 128534269 G A KCP RNA 0.42 TCGA-2W-A8YY-01 7 128547205 128547205 G A AC025594.1 3'Flank 0.56 TCGA-2W-A8YY-01 7 128588710 128588710 C T IRF5 Silent p.I461I 0.41 TCGA-2W-A8YY-01 7 128865246 128865246 G A AHCYL2 Missense_Mutation p.G110D 0.60 deleterious_low_confidence(0) benign(0.002) TCGA-2W-A8YY-01 7 129029523 129029523 C T AHCYL2 Missense_Mutation p.P223L 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 129093083 129093083 G A STRIP2 Missense_Mutation p.C142Y 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 129095166 129095166 A C STRIP2 Missense_Mutation p.H263P 0.44 deleterious(0) probably_damaging(0.974) TCGA-2W-A8YY-01 7 129396534 129396534 C T NRF1 3'UTR 0.46 TCGA-2W-A8YY-01 7 129815443 129815443 G T TMEM209 Missense_Mutation p.S418Y 0.46 deleterious(0) possibly_damaging(0.701) TCGA-2W-A8YY-01 7 129825062 129825062 G A TMEM209 Silent p.A307A 0.43 TCGA-2W-A8YY-01 7 129915005 129915005 A T CPA2 Missense_Mutation p.D168V 0.40 deleterious(0.02) benign(0.069) TCGA-2W-A8YY-01 7 130021702 130021702 G A CPA1 Missense_Mutation p.E127K 0.27 tolerated(0.06) possibly_damaging(0.854) TCGA-2W-A8YY-01 7 130038412 130038412 A - CEP41 3'UTR 0.36 TCGA-2W-A8YY-01 7 130137775 130137775 A G MEST Splice_Site p.X88_splice 0.10 TCGA-2W-A8YY-01 7 131814672 131814672 A G PLXNA4 3'UTR 0.16 TCGA-2W-A8YY-01 7 131895796 131895796 C T PLXNA4 Missense_Mutation p.R735H 0.46 deleterious(0) possibly_damaging(0.875) TCGA-2W-A8YY-01 7 132192808 132192808 C T PLXNA4 Silent p.A215A 0.52 TCGA-2W-A8YY-01 7 132937870 132937870 G A EXOC4 Missense_Mutation p.A5T 0.32 tolerated_low_confidence(0.43) benign(0.051) TCGA-2W-A8YY-01 7 133682272 133682272 C T EXOC4 Missense_Mutation p.T745M 0.12 tolerated(0.28) benign(0) TCGA-2W-A8YY-01 7 133749730 133749730 C T EXOC4 3'UTR 0.38 TCGA-2W-A8YY-01 7 133821831 133821831 T C LRGUK Missense_Mutation p.L118S 0.35 deleterious(0) probably_damaging(0.937) TCGA-2W-A8YY-01 7 133868553 133868553 C T LRGUK Nonsense_Mutation p.R428* 0.37 TCGA-2W-A8YY-01 7 133984981 133984981 A G SLC35B4 Missense_Mutation p.S174P 0.44 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 7 134223761 134223761 C T AKR1B10 Silent p.N300N 0.31 TCGA-2W-A8YY-01 7 134264262 134264262 C A AKR1B15 Missense_Mutation p.F332L 0.16 tolerated(0.48) benign(0) TCGA-2W-A8YY-01 7 134644753 134644753 C T CALD1 Missense_Mutation p.P697L 0.36 deleterious(0) possibly_damaging(0.901) TCGA-2W-A8YY-01 7 134728862 134728862 C T AGBL3 Silent p.N529N 0.37 TCGA-2W-A8YY-01 7 134870947 134870947 C A WDR91 Missense_Mutation p.D734Y 0.37 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 7 134871853 134871853 C T WDR91 Silent p.T650T 0.44 TCGA-2W-A8YY-01 7 135047820 135047820 C A CNOT4 Missense_Mutation p.Q653H 0.49 tolerated_low_confidence(0.19) probably_damaging(0.977) TCGA-2W-A8YY-01 7 135292079 135292079 C T NUP205 Missense_Mutation p.A1052V 0.36 tolerated(0.2) benign(0.163) TCGA-2W-A8YY-01 7 135304625 135304625 C T NUP205 Missense_Mutation p.T1440I 0.38 deleterious(0.03) benign(0.243) TCGA-2W-A8YY-01 7 135322704 135322704 G A NUP205 Missense_Mutation p.R1721H 0.48 tolerated(0.07) possibly_damaging(0.611) TCGA-2W-A8YY-01 7 135370311 135370311 G A SLC13A4 Missense_Mutation p.P522S 0.11 tolerated(0.31) probably_damaging(1) TCGA-2W-A8YY-01 7 135386478 135386478 G A SLC13A4 Missense_Mutation p.P221S 0.34 tolerated(0.11) benign(0.014) TCGA-2W-A8YY-01 7 135392940 135392940 G A SLC13A4 Missense_Mutation p.A96V 0.29 deleterious(0) possibly_damaging(0.853) TCGA-2W-A8YY-01 7 135412291 135412291 C T SLC13A4 5'UTR 0.24 TCGA-2W-A8YY-01 7 136699577 136699577 T A CHRM2 5'UTR 0.21 TCGA-2W-A8YY-01 7 137028406 137028406 A C PTN 5'UTR 0.36 TCGA-2W-A8YY-01 7 137564879 137564879 C T CREB3L2 3'UTR 0.37 TCGA-2W-A8YY-01 7 137564906 137564906 T C CREB3L2 3'UTR 0.34 TCGA-2W-A8YY-01 7 137597661 137597661 C A CREB3L2 Intron 0.26 TCGA-2W-A8YY-01 7 137612946 137612946 C T CREB3L2 Missense_Mutation p.R90Q 0.23 tolerated(0.05) benign(0.06) TCGA-2W-A8YY-01 7 137773398 137773398 T C AKR1D1 Missense_Mutation p.Y49H 0.11 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 138591802 138591802 C T KIAA1549 Missense_Mutation p.G1108D 0.41 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 7 138595912 138595912 G A KIAA1549 Missense_Mutation p.S1042F 0.09 tolerated(0.32) probably_damaging(0.983) TCGA-2W-A8YY-01 7 138597179 138597179 T C KIAA1549 Missense_Mutation p.Y969C 0.50 tolerated(0.08) probably_damaging(0.935) TCGA-2W-A8YY-01 7 138602479 138602479 C T KIAA1549 Silent p.P631P 0.21 TCGA-2W-A8YY-01 7 138602635 138602635 C T KIAA1549 Silent p.P579P 0.34 TCGA-2W-A8YY-01 7 138603515 138603515 C T KIAA1549 Missense_Mutation p.R286Q 0.50 tolerated(0.59) benign(0.001) TCGA-2W-A8YY-01 7 138604161 138604161 T C KIAA1549 Missense_Mutation p.N71D 0.38 tolerated_low_confidence(0.08) benign(0.004) TCGA-2W-A8YY-01 7 138738318 138738318 C T ZC3HAV1 Silent p.S776S 0.26 TCGA-2W-A8YY-01 7 138738742 138738742 C T ZC3HAV1 Missense_Mutation p.E763K 0.53 tolerated(0.79) benign(0.017) TCGA-2W-A8YY-01 7 138745854 138745854 G T ZC3HAV1 Missense_Mutation p.T675N 0.14 deleterious(0) probably_damaging(0.966) TCGA-2W-A8YY-01 7 138768750 138768750 C T ZC3HAV1 Missense_Mutation p.R158Q 0.46 deleterious(0.03) possibly_damaging(0.885) TCGA-2W-A8YY-01 7 138854036 138854036 G A TTC26 Missense_Mutation p.R336K 0.34 tolerated(0.54) benign(0.005) TCGA-2W-A8YY-01 7 138916545 138916545 G A UBN2 Silent p.Q105Q 0.47 TCGA-2W-A8YY-01 7 138969194 138969194 C T UBN2 Silent p.S1181S 0.44 TCGA-2W-A8YY-01 7 139090511 139090511 G A LUC7L2 Missense_Mutation p.R229Q 0.12 deleterious(0.04) possibly_damaging(0.59) TCGA-2W-A8YY-01 7 139107794 139107794 G T C7orf55-LUC7L2 3'UTR 0.39 TCGA-2W-A8YY-01 7 139259930 139259930 G A HIPK2 Missense_Mutation p.R1024W 0.11 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 7 13933372 13933373 - T ETV1 3'UTR 0.24 TCGA-2W-A8YY-01 7 139416429 139416429 G A HIPK2 Silent p.S135S 0.26 TCGA-2W-A8YY-01 7 139826538 139826538 T C KDM7A Missense_Mutation p.K263E 0.34 deleterious(0) probably_damaging(0.966) TCGA-2W-A8YY-01 7 140035205 140035205 G A SLC37A3 3'UTR 0.24 TCGA-2W-A8YY-01 7 140045725 140045725 G A SLC37A3 Missense_Mutation p.A357V 0.27 deleterious(0.01) possibly_damaging(0.743) TCGA-2W-A8YY-01 7 140051305 140051305 C A SLC37A3 Intron 0.36 TCGA-2W-A8YY-01 7 140080185 140080185 G A SLC37A3 Missense_Mutation p.S32L 0.31 deleterious(0.01) benign(0.223) TCGA-2W-A8YY-01 7 140159509 140159509 C T MKRN1 Missense_Mutation p.R181H 0.25 deleterious(0) possibly_damaging(0.901) TCGA-2W-A8YY-01 7 140244339 140244339 G A DENND2A Intron 0.43 TCGA-2W-A8YY-01 7 140386882 140386882 G T ADCK2 Missense_Mutation p.Q466H 0.56 deleterious(0.04) possibly_damaging(0.592) TCGA-2W-A8YY-01 7 140476881 140476881 G A BRAF Nonsense_Mutation p.R509* 0.32 TCGA-2W-A8YY-01 7 141176962 141176962 G A TMEM178B 3'UTR 0.41 TCGA-2W-A8YY-01 7 141255272 141255272 G A AGK Silent p.T2T 0.21 TCGA-2W-A8YY-01 7 141333730 141333730 G A AGK Missense_Mutation p.M206I 0.34 tolerated(0.21) benign(0) TCGA-2W-A8YY-01 7 141358804 141358804 G A KIAA1147 3'UTR 0.31 TCGA-2W-A8YY-01 7 141360710 141360710 C A KIAA1147 3'UTR 0.38 TCGA-2W-A8YY-01 7 141362467 141362468 - T KIAA1147 Frame_Shift_Ins p.C453Mfs*49 0.26 TCGA-2W-A8YY-01 7 141420797 141420797 G A WEE2 Missense_Mutation p.R274H 0.37 deleterious(0) possibly_damaging(0.906) TCGA-2W-A8YY-01 7 141423763 141423763 G T WEE2 Missense_Mutation p.K350N 0.33 tolerated(0.21) benign(0.12) TCGA-2W-A8YY-01 7 141443369 141443369 C T SSBP1 Missense_Mutation p.R32C 0.32 deleterious(0.03) benign(0.123) TCGA-2W-A8YY-01 7 141464217 141464217 G A TAS2R3 Missense_Mutation p.V87I 0.16 tolerated(1) benign(0.01) TCGA-2W-A8YY-01 7 141705333 141705333 G A MGAM Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) benign(0.019) TCGA-2W-A8YY-01 7 141803074 141803074 G A MGAM Silent p.T1777T 0.45 TCGA-2W-A8YY-01 7 141833932 141833932 C T RP11-1220K2.2 Missense_Mutation p.R243W 0.50 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 141840610 141840610 G A RP11-1220K2.2 Silent p.Q365Q 0.56 TCGA-2W-A8YY-01 7 141896506 141896506 G A RP11-1220K2.2 Missense_Mutation p.A1508T 0.39 probably_damaging(0.996) TCGA-2W-A8YY-01 7 141897310 141897310 C T RP11-1220K2.2 Silent p.H1581H 0.54 TCGA-2W-A8YY-01 7 141897500 141897500 C G RP11-1220K2.2 Missense_Mutation p.A1613G 0.37 probably_damaging(0.993) TCGA-2W-A8YY-01 7 141898541 141898541 T C RP11-1220K2.2 Splice_Site p.X1683_splice 0.42 TCGA-2W-A8YY-01 7 142149015 142149015 G A TRBV5-5 Missense_Mutation p.R86C 0.38 deleterious(0) benign(0.013) TCGA-2W-A8YY-01 7 142168504 142168504 C T TRBV5-4 Silent p.E73E 0.32 TCGA-2W-A8YY-01 7 142364692 142364692 C T TRBV24-1 Silent p.F109F 0.25 TCGA-2W-A8YY-01 7 142423563 142423563 G A TRBV27 Silent p.A73A 0.32 TCGA-2W-A8YY-01 7 142563841 142563841 G A EPHB6 Missense_Mutation p.C410Y 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 142571355 142571355 G T TRPV6 Missense_Mutation p.A545D 0.32 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 7 142606688 142606688 G A TRPV5 Silent p.C621C 0.46 TCGA-2W-A8YY-01 7 142606735 142606735 G A TRPV5 Missense_Mutation p.R606W 0.35 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 7 142611847 142611847 G A TRPV5 Silent p.C494C 0.41 TCGA-2W-A8YY-01 7 142622705 142622705 G A TRPV5 Silent p.C347C 0.30 TCGA-2W-A8YY-01 7 142638429 142638429 C T KEL Silent p.G703G 0.46 TCGA-2W-A8YY-01 7 142658542 142658542 G A KEL Missense_Mutation p.A43V 0.31 tolerated(0.12) benign(0.007) TCGA-2W-A8YY-01 7 142983989 142983989 G A TMEM139 3'UTR 0.47 TCGA-2W-A8YY-01 7 142997085 142997085 G A CASP2 Missense_Mutation p.A273T 0.43 deleterious(0.01) possibly_damaging(0.753) TCGA-2W-A8YY-01 7 143001781 143001781 C T CASP2 Missense_Mutation p.R378W 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 143002186 143002186 G A CASP2 3'UTR 0.57 TCGA-2W-A8YY-01 7 143029829 143029829 G A CLCN1 Missense_Mutation p.E422K 0.41 deleterious(0) probably_damaging(0.981) TCGA-2W-A8YY-01 7 143042801 143042801 G A CLCN1 Silent p.E706E 0.40 TCGA-2W-A8YY-01 7 143049016 143049016 G A CLCN1 Silent p.L975L 0.38 TCGA-2W-A8YY-01 7 143053872 143053872 G A FAM131B Missense_Mutation p.T285I 0.49 deleterious(0.03) benign(0.068) TCGA-2W-A8YY-01 7 143053955 143053955 T C FAM131B Silent p.Q257Q 0.50 TCGA-2W-A8YY-01 7 143055951 143055951 G A FAM131B Silent p.S145S 0.39 TCGA-2W-A8YY-01 7 143085633 143085633 G A ZYX Missense_Mutation p.R399H 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-2W-A8YY-01 7 143088812 143088812 A G EPHA1 Missense_Mutation p.V918A 0.38 deleterious(0.01) possibly_damaging(0.873) TCGA-2W-A8YY-01 7 143091425 143091425 G A EPHA1 Silent p.I788I 0.45 TCGA-2W-A8YY-01 7 143175069 143175069 G A TAS2R41 Nonsense_Mutation p.W35* 0.30 TCGA-2W-A8YY-01 7 143453404 143453404 A G CTAGE6 Missense_Mutation p.F450L 0.16 deleterious(0.04) benign(0.026) TCGA-2W-A8YY-01 7 143657722 143657722 A G OR2F1 Missense_Mutation p.Q220R 0.10 tolerated(0.62) benign(0.001) TCGA-2W-A8YY-01 7 143701472 143701472 G A OR6B1 Missense_Mutation p.R128H 0.43 tolerated(1) benign(0) TCGA-2W-A8YY-01 7 143792487 143792487 G A OR2A12 Missense_Mutation p.C96Y 0.38 deleterious(0.01) benign(0.32) TCGA-2W-A8YY-01 7 143807078 143807078 A G OR2A2 Missense_Mutation p.M135V 0.38 tolerated(0.08) benign(0.368) TCGA-2W-A8YY-01 7 143929548 143929548 C T OR2A42 Missense_Mutation p.R130Q 0.27 tolerated(0.84) benign(0.002) TCGA-2W-A8YY-01 7 143956067 143956067 A G OR2A7 Missense_Mutation p.C219R 0.11 tolerated(0.95) benign(0.004) TCGA-2W-A8YY-01 7 144060669 144060669 G A ARHGEF5 Missense_Mutation p.G303S 0.28 tolerated(0.33) benign(0.005) TCGA-2W-A8YY-01 7 144077274 144077274 A G ARHGEF5 3'UTR 0.11 TCGA-2W-A8YY-01 7 144096059 144096059 C A NOBOX Missense_Mutation p.G485W 0.26 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 7 144098283 144098283 G A NOBOX Missense_Mutation p.P234S 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 145813933 145813933 C T CNTNAP2 5'UTR 0.46 TCGA-2W-A8YY-01 7 14741332 14741332 C T DGKB Missense_Mutation p.D164N 0.45 deleterious(0.04) probably_damaging(0.996) TCGA-2W-A8YY-01 7 147600775 147600775 C T CNTNAP2 Silent p.P739P 0.27 TCGA-2W-A8YY-01 7 1484415 1484415 T C MICALL2 Missense_Mutation p.S431G 0.42 tolerated(1) benign(0) TCGA-2W-A8YY-01 7 1484617 1484617 G A MICALL2 Silent p.A363A 0.49 TCGA-2W-A8YY-01 7 1484636 1484636 G A MICALL2 Missense_Mutation p.A357V 0.51 tolerated(0.23) benign(0.005) TCGA-2W-A8YY-01 7 148481139 148481139 C A CUL1 Missense_Mutation p.A423D 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 148486909 148486909 G A CUL1 Silent p.L555L 0.33 TCGA-2W-A8YY-01 7 148496432 148496432 C T CUL1 Silent p.V734V 0.15 TCGA-2W-A8YY-01 7 1484986 1484986 G A MICALL2 Silent p.S240S 0.41 TCGA-2W-A8YY-01 7 148508761 148508761 C A EZH2 Missense_Mutation p.D635Y 0.39 deleterious(0.05) benign(0.016) TCGA-2W-A8YY-01 7 148533936 148533936 C T EZH2 Intron 0.36 TCGA-2W-A8YY-01 7 148700253 148700253 C T PDIA4 3'UTR 0.12 TCGA-2W-A8YY-01 7 148703054 148703054 C T PDIA4 Missense_Mutation p.R408H 0.34 deleterious(0.01) probably_damaging(0.981) TCGA-2W-A8YY-01 7 148709352 148709352 C T PDIA4 Missense_Mutation p.A239T 0.45 tolerated(0.36) benign(0.003) TCGA-2W-A8YY-01 7 148712119 148712119 A G PDIA4 Missense_Mutation p.V164A 0.35 deleterious(0.04) probably_damaging(0.949) TCGA-2W-A8YY-01 7 148768611 148768611 G A ZNF786 Missense_Mutation p.A418V 0.27 tolerated(0.92) benign(0.011) TCGA-2W-A8YY-01 7 148802036 148802036 C T ZNF425 Silent p.R309R 0.34 TCGA-2W-A8YY-01 7 148802230 148802230 G A ZNF425 Missense_Mutation p.R245W 0.27 deleterious(0.04) possibly_damaging(0.676) TCGA-2W-A8YY-01 7 148921506 148921506 C T ZNF282 Silent p.L595L 0.31 TCGA-2W-A8YY-01 7 148921655 148921655 G A ZNF282 Silent p.S644S 0.37 TCGA-2W-A8YY-01 7 148947581 148947581 G A ZNF212 Missense_Mutation p.R119H 0.40 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 7 148964023 148964023 G A ZNF783 Silent p.T178T 0.30 TCGA-2W-A8YY-01 7 148979024 148979024 G A ZNF783 Missense_Mutation p.E411K 0.50 tolerated(0.53) benign(0.007) TCGA-2W-A8YY-01 7 148991810 148991810 G A RP4-800G7.2 RNA 0.48 TCGA-2W-A8YY-01 7 148991819 148991819 C T RP4-800G7.2 RNA 0.12 TCGA-2W-A8YY-01 7 149171666 149171666 G A ZNF746 Missense_Mutation p.R583C 0.34 deleterious(0.02) probably_damaging(0.988) TCGA-2W-A8YY-01 7 149318646 149318646 G T ZNF767 RNA 0.28 TCGA-2W-A8YY-01 7 149422565 149422565 G A KRBA1 Missense_Mutation p.R429K 0.26 tolerated(0.7) benign(0.105) TCGA-2W-A8YY-01 7 149430909 149430909 G A KRBA1 Missense_Mutation p.G955S 0.52 tolerated(0.3) probably_damaging(0.994) TCGA-2W-A8YY-01 7 149461691 149461691 C T ZNF467 3'UTR 0.35 TCGA-2W-A8YY-01 7 149489817 149489817 G T SSPO Intron 0.53 TCGA-2W-A8YY-01 7 149508775 149508775 G A SSPO RNA 0.39 TCGA-2W-A8YY-01 7 149518038 149518038 G A SSPO RNA 0.31 TCGA-2W-A8YY-01 7 149519059 149519059 G T SSPO RNA 0.23 TCGA-2W-A8YY-01 7 149525027 149525027 G A SSPO RNA 0.47 TCGA-2W-A8YY-01 7 149558835 149558835 C T ZNF862 Silent p.I862I 0.34 TCGA-2W-A8YY-01 7 149558858 149558858 C T ZNF862 Missense_Mutation p.A870V 0.34 deleterious(0.02) benign(0.411) TCGA-2W-A8YY-01 7 149559067 149559067 C T ZNF862 Nonsense_Mutation p.R940* 0.34 TCGA-2W-A8YY-01 7 149572715 149572715 G A ATP6V0E2 Missense_Mutation p.A94T 0.31 deleterious_low_confidence(0.01) probably_damaging(0.929) TCGA-2W-A8YY-01 7 150027921 150027921 A T ZBED6CL Missense_Mutation p.E143V 0.28 deleterious(0.05) benign(0.173) TCGA-2W-A8YY-01 7 150028086 150028086 A C ZBED6CL Missense_Mutation p.K198T 0.26 deleterious(0.04) benign(0.013) TCGA-2W-A8YY-01 7 150028930 150028930 G A ZBED6CL 3'UTR 0.31 TCGA-2W-A8YY-01 7 150070025 150070025 C T REPIN1 Silent p.H622H 0.09 TCGA-2W-A8YY-01 7 150070535 150070535 G A REPIN1 3'Flank 0.45 TCGA-2W-A8YY-01 7 150094516 150094516 G A ZNF775 Missense_Mutation p.R316H 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 150324718 150324718 G T GIMAP6 3'UTR 0.08 TCGA-2W-A8YY-01 7 150389662 150389662 G A GIMAP2 Silent p.Q96Q 0.39 TCGA-2W-A8YY-01 7 150390277 150390277 A G GIMAP2 Silent p.L301L 0.38 TCGA-2W-A8YY-01 7 150390311 150390311 C A GIMAP2 Missense_Mutation p.L313M 0.62 deleterious(0.01) probably_damaging(0.98) TCGA-2W-A8YY-01 7 150647362 150647362 C T KCNH2 Silent p.P764P 0.47 TCGA-2W-A8YY-01 7 150649557 150649557 C T KCNH2 Missense_Mutation p.A505T 0.20 deleterious(0) probably_damaging(0.937) TCGA-2W-A8YY-01 7 150649750 150649750 C T KCNH2 Silent p.P440P 0.48 TCGA-2W-A8YY-01 7 150710873 150710873 T C NOS3 Missense_Mutation p.L1106P 0.39 tolerated(0.05) benign(0.126) TCGA-2W-A8YY-01 7 150710934 150710934 C T NOS3 Silent p.T1126T 0.41 TCGA-2W-A8YY-01 7 150710985 150710985 C T NOS3 Silent p.G1143G 0.33 TCGA-2W-A8YY-01 7 150730843 150730843 G A ABCB8 Missense_Mutation p.V83I 0.33 tolerated_low_confidence(0.35) benign(0.004) TCGA-2W-A8YY-01 7 150733023 150733023 C T ABCB8 Missense_Mutation p.R328C 0.40 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 7 150737668 150737668 C T ABCB8 Silent p.C445C 0.53 TCGA-2W-A8YY-01 7 150742459 150742459 C T ABCB8 3'UTR 0.46 TCGA-2W-A8YY-01 7 150746265 150746265 G A ASIC3 Missense_Mutation p.R98H 0.27 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 150747622 150747622 C T ASIC3 Missense_Mutation p.P247L 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-2W-A8YY-01 7 150748910 150748910 G A ASIC3 Missense_Mutation p.A410T 0.24 deleterious(0) benign(0.167) TCGA-2W-A8YY-01 7 150776762 150776762 G A FASTK Silent p.R110R 0.39 TCGA-2W-A8YY-01 7 150776998 150776998 G A FASTK Missense_Mutation p.P32S 0.19 tolerated_low_confidence(0.1) benign(0.063) TCGA-2W-A8YY-01 7 150815311 150815311 G A AGAP3 Missense_Mutation p.A241T 0.34 tolerated(0.92) benign(0.001) TCGA-2W-A8YY-01 7 150839043 150839043 C T AGAP3 Silent p.F621F 0.32 TCGA-2W-A8YY-01 7 150873267 150873267 G A ASB10 Missense_Mutation p.P446S 0.33 tolerated(0.26) benign(0.21) TCGA-2W-A8YY-01 7 150910985 150910985 G A ABCF2 Intron 0.50 TCGA-2W-A8YY-01 7 150912039 150912039 C T ABCF2 Missense_Mutation p.A554T 0.29 deleterious(0.03) possibly_damaging(0.866) TCGA-2W-A8YY-01 7 150939866 150939866 C T SMARCD3 Missense_Mutation p.D133N 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 151097210 151097210 C T WDR86 Missense_Mutation p.R94Q 0.30 tolerated(0.1) benign(0.104) TCGA-2W-A8YY-01 7 151127123 151127123 C T CRYGN 3'UTR 0.11 TCGA-2W-A8YY-01 7 1514398 1514398 G A INTS1 Missense_Mutation p.A1860V 0.44 tolerated(0.5) benign(0.359) TCGA-2W-A8YY-01 7 151791366 151791366 G A GALNT11 Silent p.A18A 0.31 TCGA-2W-A8YY-01 7 151805247 151805247 C T GALNT11 Silent p.A279A 0.32 TCGA-2W-A8YY-01 7 151818709 151818709 G A GALNT11 Missense_Mutation p.A592T 0.47 tolerated(0.44) benign(0.013) TCGA-2W-A8YY-01 7 151845222 151845222 C T KMT2C Missense_Mutation p.R4597H 0.41 benign(0.146) TCGA-2W-A8YY-01 7 151859541 151859541 G A KMT2C Silent p.L3707L 0.12 TCGA-2W-A8YY-01 7 151878538 151878538 C A KMT2C Missense_Mutation p.G2136V 0.28 probably_damaging(0.988) TCGA-2W-A8YY-01 7 151900034 151900034 G A KMT2C Silent p.F1359F 0.41 TCGA-2W-A8YY-01 7 1522249 1522249 C T INTS1 Silent p.A1212A 0.40 TCGA-2W-A8YY-01 7 152345989 152345989 G A XRCC2 Missense_Mutation p.T194M 0.14 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 7 1526320 1526320 C T INTS1 Missense_Mutation p.D973N 0.37 deleterious(0) possibly_damaging(0.825) TCGA-2W-A8YY-01 7 1529251 1529251 C T INTS1 Missense_Mutation p.A745T 0.39 tolerated(0.34) benign(0.177) TCGA-2W-A8YY-01 7 1533410 1533410 G A INTS1 Missense_Mutation p.A683V 0.35 deleterious(0) possibly_damaging(0.849) TCGA-2W-A8YY-01 7 1539630 1539630 C T INTS1 Missense_Mutation p.A192T 0.46 tolerated(0.31) benign(0.081) TCGA-2W-A8YY-01 7 154561163 154561163 C T DPP6 Missense_Mutation p.S307F 0.33 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 154659744 154659744 C T DPP6 Missense_Mutation p.A585V 0.17 tolerated(0.12) benign(0.128) TCGA-2W-A8YY-01 7 154667691 154667691 C T DPP6 Silent p.H653H 0.08 TCGA-2W-A8YY-01 7 154753265 154753265 G A PAXIP1 Missense_Mutation p.R741C 0.30 deleterious(0) unknown(0) TCGA-2W-A8YY-01 7 154760692 154760692 C T PAXIP1 Missense_Mutation p.A407T 0.35 tolerated_low_confidence(0.41) unknown(0) TCGA-2W-A8YY-01 7 154863070 154863070 G A HTR5A Missense_Mutation p.R154H 0.42 deleterious(0.02) probably_damaging(0.982) TCGA-2W-A8YY-01 7 154863096 154863096 G A HTR5A Missense_Mutation p.A163T 0.48 tolerated(0.16) benign(0.04) TCGA-2W-A8YY-01 7 154863299 154863299 C T HTR5A Silent p.R230R 0.09 TCGA-2W-A8YY-01 7 155257282 155257282 A G EN2 3'UTR 0.39 TCGA-2W-A8YY-01 7 155436163 155436163 G A AC009403.2 Missense_Mutation p.R34W 0.48 possibly_damaging(0.833) TCGA-2W-A8YY-01 7 155465575 155465575 A G RBM33 Missense_Mutation p.D46G 0.29 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 7 155473488 155473488 C T RBM33 Silent p.H151H 0.32 TCGA-2W-A8YY-01 7 155499637 155499637 C T RBM33 Missense_Mutation p.R275W 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 7 155503986 155503986 G A RBM33 Silent p.P346P 0.47 TCGA-2W-A8YY-01 7 155530821 155530821 G A RBM33 Silent p.P487P 0.48 TCGA-2W-A8YY-01 7 155530842 155530842 T C RBM33 Silent p.S494S 0.38 TCGA-2W-A8YY-01 7 155532438 155532438 G A RBM33 Silent p.P589P 0.38 TCGA-2W-A8YY-01 7 155556590 155556590 C T RBM33 Missense_Mutation p.R1022C 0.44 deleterious(0) unknown(0) TCGA-2W-A8YY-01 7 155570894 155570894 C T RBM33 3'UTR 0.32 TCGA-2W-A8YY-01 7 155592750 155592750 G A SHH 3'UTR 0.30 TCGA-2W-A8YY-01 7 155599102 155599102 C T SHH Silent p.T150T 0.29 TCGA-2W-A8YY-01 7 156432769 156432769 C T C7orf13 Missense_Mutation p.A194T 0.35 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-2W-A8YY-01 7 156447397 156447397 C T RNF32 Silent p.F134F 0.38 TCGA-2W-A8YY-01 7 156473824 156473824 C T LMBR1 3'UTR 0.28 TCGA-2W-A8YY-01 7 156786847 156786847 G T MNX1 Silent p.S28S 0.41 TCGA-2W-A8YY-01 7 156799327 156799327 G A MNX1 Missense_Mutation p.A233V 0.37 deleterious(0.04) possibly_damaging(0.782) TCGA-2W-A8YY-01 7 156803888 156803888 C T MNX1 5'Flank 0.24 TCGA-2W-A8YY-01 7 156803918 156803918 G A MNX1 5'Flank 0.36 TCGA-2W-A8YY-01 7 156963011 156963011 G T UBE3C Missense_Mutation p.R70I 0.24 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 7 157046730 157046730 A G UBE3C Missense_Mutation p.Y926C 0.18 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 157046955 157046955 A G UBE3C Silent p.A967A 0.40 TCGA-2W-A8YY-01 7 157060317 157060317 C T UBE3C Silent p.S1040S 0.19 TCGA-2W-A8YY-01 7 157060805 157060805 C T UBE3C 3'UTR 0.43 TCGA-2W-A8YY-01 7 157061345 157061345 C T UBE3C 3'UTR 0.41 TCGA-2W-A8YY-01 7 157177592 157177592 G A DNAJB6 Silent p.G170G 0.45 TCGA-2W-A8YY-01 7 157369387 157369387 G A PTPRN2 Missense_Mutation p.R901C 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 157874036 157874036 G A PTPRN2 Silent p.S559S 0.28 TCGA-2W-A8YY-01 7 157959726 157959726 C T PTPRN2 Silent p.L269L 0.26 TCGA-2W-A8YY-01 7 1580452 1580452 G A MAFK 3'UTR 0.44 TCGA-2W-A8YY-01 7 1581162 1581162 G T MAFK 3'UTR 0.40 TCGA-2W-A8YY-01 7 158424140 158424140 C A NCAPG2 3'UTR 0.67 TCGA-2W-A8YY-01 7 158444986 158444986 C T NCAPG2 Missense_Mutation p.R978Q 0.41 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 7 158451093 158451093 C T NCAPG2 Missense_Mutation p.R666H 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-2W-A8YY-01 7 158482620 158482620 C T NCAPG2 Missense_Mutation p.R188H 0.44 tolerated(0.32) benign(0.003) TCGA-2W-A8YY-01 7 158524250 158524250 G A ESYT2 3'UTR 0.26 TCGA-2W-A8YY-01 7 158524343 158524343 A G ESYT2 3'UTR 0.09 TCGA-2W-A8YY-01 7 158534214 158534214 T G ESYT2 Missense_Mutation p.N750T 0.38 deleterious(0.01) possibly_damaging(0.486) TCGA-2W-A8YY-01 7 158540903 158540903 G A ESYT2 Silent p.R569R 0.12 TCGA-2W-A8YY-01 7 158672563 158672563 A G WDR60 Silent p.E254E 0.29 TCGA-2W-A8YY-01 7 158718943 158718943 G A WDR60 Missense_Mutation p.V775I 0.10 tolerated(0.19) benign(0.003) TCGA-2W-A8YY-01 7 158726835 158726835 T C WDR60 Silent p.G854G 0.33 TCGA-2W-A8YY-01 7 16501776 16501776 T A SOSTDC1 3'UTR 0.57 TCGA-2W-A8YY-01 7 16502585 16502585 C T SOSTDC1 Missense_Mutation p.R70Q 0.39 tolerated(0.39) benign(0.112) TCGA-2W-A8YY-01 7 16736594 16736594 G A BZW2 Missense_Mutation p.V293M 0.31 tolerated(0.17) possibly_damaging(0.543) TCGA-2W-A8YY-01 7 16834620 16834620 C T AGR2 Missense_Mutation p.D140N 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 1785474 1785474 G A ELFN1 Silent p.T414T 0.33 TCGA-2W-A8YY-01 7 17855851 17855851 C T SNX13 Missense_Mutation p.R636K 0.28 tolerated(0.36) benign(0.002) TCGA-2W-A8YY-01 7 1786621 1786621 G A ELFN1 Missense_Mutation p.G797S 0.27 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 1787121 1787121 C G ELFN1 3'UTR 0.17 TCGA-2W-A8YY-01 7 18688222 18688222 G A HDAC9 Silent p.T461T 0.29 TCGA-2W-A8YY-01 7 18868804 18868804 G A HDAC9 Silent p.R781R 0.08 TCGA-2W-A8YY-01 7 19184784 19184784 C T FERD3L Missense_Mutation p.E68K 0.47 tolerated(0.3) benign(0.129) TCGA-2W-A8YY-01 7 20199354 20199354 C T MACC1 Silent p.A210A 0.36 TCGA-2W-A8YY-01 7 20826402 20826402 G T SP8 Missense_Mutation p.L6I 0.43 deleterious(0.05) benign(0.064) TCGA-2W-A8YY-01 7 21469817 21469817 G A SP4 Missense_Mutation p.G345D 0.41 tolerated(0.32) benign(0.068) TCGA-2W-A8YY-01 7 21469945 21469945 G T SP4 Missense_Mutation p.D388Y 0.37 deleterious(0.04) possibly_damaging(0.67) TCGA-2W-A8YY-01 7 21765498 21765498 C T DNAH11 Nonsense_Mutation p.Q2453* 0.46 TCGA-2W-A8YY-01 7 21779217 21779217 G T DNAH11 Nonsense_Mutation p.E2621* 0.38 TCGA-2W-A8YY-01 7 21784669 21784669 C T DNAH11 Missense_Mutation p.A2840V 0.43 probably_damaging(1) TCGA-2W-A8YY-01 7 21912915 21912915 G A DNAH11 Nonsense_Mutation p.W4004* 0.53 TCGA-2W-A8YY-01 7 21912965 21912965 G A DNAH11 Missense_Mutation p.R4021K 0.11 benign(0.016) TCGA-2W-A8YY-01 7 22170686 22170686 A C RAPGEF5 Missense_Mutation p.F664C 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 7 22306588 22306588 T G RAPGEF5 Missense_Mutation p.K111T 0.44 tolerated(0.22) probably_damaging(0.991) TCGA-2W-A8YY-01 7 2275030 2275030 C T FTSJ2 Silent p.A156A 0.41 TCGA-2W-A8YY-01 7 2275087 2275087 C A FTSJ2 Missense_Mutation p.Q137H 0.45 deleterious(0.03) benign(0.275) TCGA-2W-A8YY-01 7 22765761 22765761 C T IL6 5'UTR 0.10 TCGA-2W-A8YY-01 7 2290637 2290637 C T NUDT1 3'UTR 0.42 TCGA-2W-A8YY-01 7 2314785 2314785 C T SNX8 Missense_Mutation p.R127H 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-2W-A8YY-01 7 23293820 23293820 T G GPNMB Missense_Mutation p.S86A 0.35 deleterious(0.02) benign(0.224) TCGA-2W-A8YY-01 7 23300222 23300222 G A GPNMB Nonsense_Mutation p.W283* 0.09 TCGA-2W-A8YY-01 7 23357328 23357328 G A IGF2BP3 Missense_Mutation p.A442V 0.27 deleterious(0.05) possibly_damaging(0.569) TCGA-2W-A8YY-01 7 23545086 23545086 G T TRA2A 3'UTR 0.56 TCGA-2W-A8YY-01 7 23547109 23547109 G A TRA2A Missense_Mutation p.R191W 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 23561888 23561888 A - TRA2A Intron 0.31 TCGA-2W-A8YY-01 7 23830450 23830450 G A STK31 Missense_Mutation p.R882Q 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 2400440 2400440 C T EIF3B Nonsense_Mutation p.R199* 0.22 TCGA-2W-A8YY-01 7 2415041 2415041 C T EIF3B Missense_Mutation p.A636V 0.10 tolerated(0.4) benign(0.348) TCGA-2W-A8YY-01 7 2415130 2415130 G A EIF3B Missense_Mutation p.V666I 0.39 tolerated(0.07) benign(0.066) TCGA-2W-A8YY-01 7 2419107 2419107 T G EIF3B Missense_Mutation p.I807S 0.08 deleterious(0.04) benign(0.145) TCGA-2W-A8YY-01 7 2420027 2420027 C T EIF3B 3'UTR 0.12 TCGA-2W-A8YY-01 7 2420151 2420151 G A EIF3B 3'UTR 0.58 TCGA-2W-A8YY-01 7 24324916 24324916 C T NPY Silent p.L19L 0.38 TCGA-2W-A8YY-01 7 24663308 24663308 C A MPP6 Missense_Mutation p.L8I 0.28 tolerated(0.19) benign(0.393) TCGA-2W-A8YY-01 7 2472887 2472887 G A CHST12 Missense_Mutation p.E205K 0.21 tolerated(0.11) benign(0.354) TCGA-2W-A8YY-01 7 24846414 24846414 G A OSBPL3 Nonsense_Mutation p.R809* 0.47 TCGA-2W-A8YY-01 7 24874187 24874187 G A OSBPL3 Missense_Mutation p.T555M 0.21 deleterious(0.05) benign(0.027) TCGA-2W-A8YY-01 7 24888720 24888720 C T OSBPL3 Missense_Mutation p.A412T 0.42 tolerated(0.19) benign(0.001) TCGA-2W-A8YY-01 7 25176381 25176381 G T C7orf31 Missense_Mutation p.P328H 0.37 deleterious(0.03) possibly_damaging(0.54) TCGA-2W-A8YY-01 7 25264629 25264629 C T NPVF 3'UTR 0.30 TCGA-2W-A8YY-01 7 25266315 25266315 C T NPVF Missense_Mutation p.A157T 0.33 tolerated(0.19) benign(0.096) TCGA-2W-A8YY-01 7 2567991 2567991 G A LFNG 3'UTR 0.50 TCGA-2W-A8YY-01 7 2568553 2568553 G A LFNG 3'Flank 0.41 TCGA-2W-A8YY-01 7 2568675 2568675 G A LFNG 3'Flank 0.50 TCGA-2W-A8YY-01 7 2578923 2578923 G T BRAT1 Missense_Mutation p.L554I 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 2578984 2578984 T C BRAT1 Silent p.G533G 0.43 TCGA-2W-A8YY-01 7 2581403 2581403 G A BRAT1 Silent p.C361C 0.28 TCGA-2W-A8YY-01 7 2581447 2581447 C T BRAT1 Missense_Mutation p.D347N 0.43 deleterious(0.04) benign(0.006) TCGA-2W-A8YY-01 7 2582931 2582931 C T BRAT1 Missense_Mutation p.G277D 0.35 tolerated(0.23) benign(0.07) TCGA-2W-A8YY-01 7 2583254 2583254 G A BRAT1 Missense_Mutation p.S258L 0.13 tolerated(0.75) benign(0.027) TCGA-2W-A8YY-01 7 2608629 2608629 G A IQCE Silent p.S42S 0.44 TCGA-2W-A8YY-01 7 26224537 26224537 G A NFE2L3 Missense_Mutation p.D407N 0.24 deleterious(0.01) benign(0.051) TCGA-2W-A8YY-01 7 26224889 26224889 G A NFE2L3 Missense_Mutation p.R524K 0.41 tolerated(1) benign(0.006) TCGA-2W-A8YY-01 7 26236070 26236070 G A HNRNPA2B1 Silent p.G215G 0.27 TCGA-2W-A8YY-01 7 26248069 26248069 C T CBX3 Missense_Mutation p.A75V 0.10 tolerated(0.12) benign(0.092) TCGA-2W-A8YY-01 7 26252898 26252898 A G CBX3 3'UTR 0.13 TCGA-2W-A8YY-01 7 26686147 26686147 G A C7orf71 Silent p.P166P 0.08 TCGA-2W-A8YY-01 7 2701377 2701377 G A TTYH3 3'UTR 0.38 TCGA-2W-A8YY-01 7 27141777 27141777 C T HOXA2 Missense_Mutation p.A115T 0.50 tolerated(0.34) benign(0.001) TCGA-2W-A8YY-01 7 27142110 27142110 C T HOXA2 Missense_Mutation p.E4K 0.14 deleterious(0) possibly_damaging(0.559) TCGA-2W-A8YY-01 7 27148168 27148168 C T HOXA3 Missense_Mutation p.R233H 0.28 deleterious(0) probably_damaging(0.954) TCGA-2W-A8YY-01 7 27168962 27168962 C T HOXA4 Missense_Mutation p.R282Q 0.53 deleterious(0) probably_damaging(0.94) TCGA-2W-A8YY-01 7 27169080 27169080 G A HOXA4 Missense_Mutation p.R243W 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 27181552 27181552 T G HOXA5 Missense_Mutation p.I239L 0.13 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 27181562 27181562 G A HOXA5 Silent p.S235S 0.42 TCGA-2W-A8YY-01 7 27192765 27192765 C T HOXA7 3'Flank 0.37 TCGA-2W-A8YY-01 7 27193388 27193388 C T HOXA7 3'UTR 0.39 TCGA-2W-A8YY-01 7 27203271 27203271 C T HOXA9 Missense_Mutation p.R257H 0.37 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 7 27203421 27203421 C T HOXA9 Missense_Mutation p.R207Q 0.41 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 7 27213227 27213227 C T HOXA10 Silent p.A233A 0.46 TCGA-2W-A8YY-01 7 27237955 27237955 C T HOXA13 Silent p.T343T 0.43 TCGA-2W-A8YY-01 7 27282762 27282762 C T EVX1 Missense_Mutation p.P38L 0.33 tolerated(0.06) benign(0.01) TCGA-2W-A8YY-01 7 27282868 27282868 C T EVX1 Silent p.L73L 0.22 TCGA-2W-A8YY-01 7 27284711 27284711 G A EVX1 Missense_Mutation p.E158K 0.27 tolerated(0.71) benign(0.049) TCGA-2W-A8YY-01 7 27284827 27284827 G A EVX1 Silent p.A196A 0.32 TCGA-2W-A8YY-01 7 2740207 2740207 G A AMZ1 Missense_Mutation p.R41Q 0.44 tolerated(0.17) possibly_damaging(0.588) TCGA-2W-A8YY-01 7 27577966 27577966 C A HIBADH Missense_Mutation p.G230V 0.27 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 7 27872450 27872450 G A JAZF1 Missense_Mutation p.S234L 0.32 tolerated_low_confidence(0.06) benign(0.012) TCGA-2W-A8YY-01 7 28862134 28862134 T C CREB5 3'UTR 0.21 TCGA-2W-A8YY-01 7 28862640 28862640 G A CREB5 3'UTR 0.28 TCGA-2W-A8YY-01 7 29553657 29553657 G T CHN2 3'UTR 0.29 TCGA-2W-A8YY-01 7 295982 295982 C T FAM20C Missense_Mutation p.R414C 0.45 deleterious(0.01) probably_damaging(0.978) TCGA-2W-A8YY-01 7 2962889 2962889 G A CARD11 Silent p.G673G 0.22 TCGA-2W-A8YY-01 7 2974211 2974211 G A CARD11 Missense_Mutation p.A465V 0.44 tolerated(0.26) benign(0) TCGA-2W-A8YY-01 7 29966127 29966127 G A SCRN1 Missense_Mutation p.R363C 0.45 deleterious(0) possibly_damaging(0.847) TCGA-2W-A8YY-01 7 29980431 29980431 C T SCRN1 Silent p.P222P 0.36 TCGA-2W-A8YY-01 7 30185848 30185848 A G MTURN Missense_Mutation p.Y73C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-2W-A8YY-01 7 30795472 30795472 G A INMT 3'UTR 0.50 TCGA-2W-A8YY-01 7 30821730 30821730 G A FAM188B Silent p.V107V 0.30 TCGA-2W-A8YY-01 7 30878908 30878908 A - FAM188B Frame_Shift_Del p.K445Nfs*4 0.27 TCGA-2W-A8YY-01 7 30951821 30951821 C T AQP1 Silent p.I99I 0.32 TCGA-2W-A8YY-01 7 30962229 30962229 G A AQP1 Silent p.A200A 0.12 TCGA-2W-A8YY-01 7 31009462 31009462 G T GHRHR Intron 0.26 TCGA-2W-A8YY-01 7 31016139 31016139 G A GHRHR Missense_Mutation p.R357H 0.38 deleterious(0.03) possibly_damaging(0.67) TCGA-2W-A8YY-01 7 31124942 31124942 G A ADCYAP1R1 Missense_Mutation p.R185H 0.52 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 31378400 31378400 G A NEUROD6 Silent p.F161F 0.44 TCGA-2W-A8YY-01 7 31378427 31378427 G A NEUROD6 Silent p.I152I 0.35 TCGA-2W-A8YY-01 7 31876832 31876832 G A PDE1C Missense_Mutation p.R449C 0.19 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 7 32623538 32623538 C T AVL9 3'UTR 0.15 TCGA-2W-A8YY-01 7 32908473 32908473 G T KBTBD2 3'UTR 0.41 TCGA-2W-A8YY-01 7 32909014 32909014 C T KBTBD2 Silent p.T605T 0.25 TCGA-2W-A8YY-01 7 32909661 32909661 C T KBTBD2 Missense_Mutation p.V390I 0.14 tolerated(0.33) possibly_damaging(0.571) TCGA-2W-A8YY-01 7 32910009 32910009 C T KBTBD2 Missense_Mutation p.A274T 0.34 tolerated(0.21) benign(0.011) TCGA-2W-A8YY-01 7 32910092 32910092 A G KBTBD2 Missense_Mutation p.V246A 0.37 tolerated(0.49) possibly_damaging(0.713) TCGA-2W-A8YY-01 7 33014818 33014818 T C FKBP9 Missense_Mutation p.V131A 0.19 tolerated(0.07) benign(0.307) TCGA-2W-A8YY-01 7 33185918 33185918 A G BBS9 Silent p.E18E 0.33 TCGA-2W-A8YY-01 7 33390905 33390905 A C BBS9 Missense_Mutation p.N503H 0.35 tolerated(0.1) possibly_damaging(0.717) TCGA-2W-A8YY-01 7 33644885 33644885 C T BBS9 3'UTR 0.29 TCGA-2W-A8YY-01 7 33767359 33767359 G A RP11-89N17.1 Missense_Mutation p.A40T 0.63 unknown(0) TCGA-2W-A8YY-01 7 34818094 34818094 A G NPSR1 Missense_Mutation p.N101D 0.33 deleterious(0.02) probably_damaging(0.932) TCGA-2W-A8YY-01 7 35293219 35293219 C T TBX20 Missense_Mutation p.A5T 0.43 deleterious_low_confidence(0.03) benign(0.025) TCGA-2W-A8YY-01 7 35840648 35840648 G A SEPT7 5'UTR 0.44 TCGA-2W-A8YY-01 7 35840681 35840681 C T SEPT7 5'UTR 0.58 TCGA-2W-A8YY-01 7 35840715 35840715 G T SEPT7 5'UTR 0.67 TCGA-2W-A8YY-01 7 35937862 35937862 C T SEPT7 Missense_Mutation p.P336S 0.32 deleterious(0.05) probably_damaging(0.982) TCGA-2W-A8YY-01 7 36194515 36194515 G T EEPD1 Missense_Mutation p.Q194H 0.23 tolerated(0.12) benign(0.211) TCGA-2W-A8YY-01 7 36324387 36324387 C T EEPD1 Silent p.H378H 0.34 TCGA-2W-A8YY-01 7 36339184 36339184 G A EEPD1 3'UTR 0.50 TCGA-2W-A8YY-01 7 36396717 36396717 G A KIAA0895 Silent p.L221L 0.45 TCGA-2W-A8YY-01 7 36406425 36406425 G A KIAA0895 Intron 0.15 TCGA-2W-A8YY-01 7 36447414 36447414 G A ANLN Silent p.E315E 0.29 TCGA-2W-A8YY-01 7 36450301 36450301 A T ANLN Missense_Mutation p.Q425H 0.29 tolerated(0.08) benign(0.001) TCGA-2W-A8YY-01 7 36671662 36671662 C A AOAH Missense_Mutation p.K167N 0.34 tolerated(0.37) benign(0.009) TCGA-2W-A8YY-01 7 36894390 36894390 G A ELMO1 3'UTR 0.45 TCGA-2W-A8YY-01 7 37264586 37264586 C T ELMO1 Missense_Mutation p.R200Q 0.37 tolerated(0.37) probably_damaging(0.999) TCGA-2W-A8YY-01 7 37298948 37298948 T C ELMO1 Missense_Mutation p.N84S 0.50 tolerated(0.41) benign(0.01) TCGA-2W-A8YY-01 7 37936676 37936676 G T NME8 Missense_Mutation p.E583D 0.12 tolerated(0.51) possibly_damaging(0.524) TCGA-2W-A8YY-01 7 37956035 37956035 C T SFRP4 Missense_Mutation p.M35I 0.26 deleterious(0.01) possibly_damaging(0.901) TCGA-2W-A8YY-01 7 37960321 37960321 C T EPDR1 5'UTR 0.13 TCGA-2W-A8YY-01 7 37988527 37988527 A G EPDR1 Missense_Mutation p.T119A 0.33 tolerated(0.2) benign(0.02) TCGA-2W-A8YY-01 7 37988619 37988619 G A EPDR1 Silent p.Q149Q 0.40 TCGA-2W-A8YY-01 7 38339549 38339549 G A TRGV10 Silent p.S72S 0.12 TCGA-2W-A8YY-01 7 38339642 38339642 C T TRGV10 Silent p.S41S 0.29 TCGA-2W-A8YY-01 7 38398577 38398577 G A TRGV3 Missense_Mutation p.R2W 0.33 deleterious(0.03) benign(0.42) TCGA-2W-A8YY-01 7 38725354 38725354 C T FAM183B Silent p.E84E 0.32 TCGA-2W-A8YY-01 7 38948777 38948777 C T VPS41 5'UTR 0.15 TCGA-2W-A8YY-01 7 39379433 39379433 C T POU6F2 Missense_Mutation p.P235L 0.33 tolerated_low_confidence(0.25) unknown(0) TCGA-2W-A8YY-01 7 39736409 39736409 A G RALA Missense_Mutation p.N150S 0.48 tolerated(0.17) benign(0) TCGA-2W-A8YY-01 7 39745770 39745770 A G RALA Missense_Mutation p.S183G 0.45 tolerated(0.23) benign(0) TCGA-2W-A8YY-01 7 39747580 39747580 G A RALA 3'UTR 0.45 TCGA-2W-A8YY-01 7 39747631 39747631 G A RALA 3'UTR 0.35 TCGA-2W-A8YY-01 7 39831389 39831389 G A LINC00265 RNA 0.24 TCGA-2W-A8YY-01 7 39831401 39831401 C T LINC00265 RNA 0.48 TCGA-2W-A8YY-01 7 40085583 40085583 G A CDK13 Silent p.L834L 0.28 TCGA-2W-A8YY-01 7 4050647 4050647 C T SDK1 Silent p.G727G 0.27 TCGA-2W-A8YY-01 7 4050648 4050648 G A SDK1 Missense_Mutation p.V728I 0.11 tolerated(0.18) benign(0.011) TCGA-2W-A8YY-01 7 4119147 4119147 C T SDK1 Silent p.S1085S 0.50 TCGA-2W-A8YY-01 7 4153765 4153765 G A SDK1 Missense_Mutation p.V1228I 0.42 tolerated(0.24) benign(0.029) TCGA-2W-A8YY-01 7 41729464 41729464 C T INHBA Silent p.P355P 0.11 TCGA-2W-A8YY-01 7 4198109 4198109 G A SDK1 Missense_Mutation p.R1552H 0.40 deleterious(0) probably_damaging(0.964) TCGA-2W-A8YY-01 7 42001106 42001106 C T GLI3 3'UTR 0.31 TCGA-2W-A8YY-01 7 42001155 42001155 A C GLI3 3'UTR 0.44 TCGA-2W-A8YY-01 7 42003834 42003834 A G GLI3 3'UTR 0.36 TCGA-2W-A8YY-01 7 42005170 42005170 G A GLI3 Silent p.S1167S 0.09 TCGA-2W-A8YY-01 7 4260925 4260925 C T SDK1 Missense_Mutation p.T1919M 0.24 deleterious(0.02) possibly_damaging(0.87) TCGA-2W-A8YY-01 7 4285376 4285376 G A SDK1 Missense_Mutation p.G2107D 0.22 tolerated(0.86) benign(0.008) TCGA-2W-A8YY-01 7 4308292 4308292 C T SDK1 3'UTR 0.26 TCGA-2W-A8YY-01 7 43351604 43351604 C T HECW1 Silent p.I90I 0.35 TCGA-2W-A8YY-01 7 43482175 43482175 A G HECW1 Missense_Mutation p.H331R 0.27 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 7 43532751 43532751 C T HECW1 Missense_Mutation p.P1137S 0.38 tolerated(0.09) benign(0.298) TCGA-2W-A8YY-01 7 43540917 43540917 C T HECW1 Silent p.S1209S 0.29 TCGA-2W-A8YY-01 7 43601449 43601449 C T HECW1 Missense_Mutation p.P1582L 0.57 deleterious(0.02) probably_damaging(0.978) TCGA-2W-A8YY-01 7 43664279 43664279 C T STK17A Silent p.T361T 0.25 TCGA-2W-A8YY-01 7 43684867 43684867 C T COA1 Missense_Mutation p.D83N 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-2W-A8YY-01 7 43827617 43827617 G A BLVRA Missense_Mutation p.V43M 0.09 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 7 43992910 43992910 G A UBE2D4 3'UTR 0.29 TCGA-2W-A8YY-01 7 43992950 43992950 A G UBE2D4 3'UTR 0.67 TCGA-2W-A8YY-01 7 44046872 44046872 T C SPDYE1 Missense_Mutation p.L213P 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 7 44054248 44054248 G A SPDYE1 3'Flank 0.44 TCGA-2W-A8YY-01 7 44089844 44089844 G A DBNL Missense_Mutation p.G35D 0.36 deleterious(0) probably_damaging(0.944) TCGA-2W-A8YY-01 7 44114017 44114017 C T POLM Silent p.T316T 0.36 TCGA-2W-A8YY-01 7 44149704 44149704 G A AEBP1 Missense_Mutation p.R414H 0.14 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 44152367 44152367 G A AEBP1 Missense_Mutation p.A810T 0.29 deleterious(0.03) probably_damaging(0.913) TCGA-2W-A8YY-01 7 44153539 44153539 G A AEBP1 Silent p.T1052T 0.38 TCGA-2W-A8YY-01 7 44153770 44153770 G A AEBP1 Silent p.E1129E 0.50 TCGA-2W-A8YY-01 7 44555795 44555795 G A NPC1L1 Missense_Mutation p.A1201V 0.74 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 44561375 44561375 C T NPC1L1 Silent p.P963P 0.21 TCGA-2W-A8YY-01 7 44578608 44578608 C T NPC1L1 Missense_Mutation p.R463H 0.40 tolerated(0.07) benign(0.104) TCGA-2W-A8YY-01 7 44609493 44609493 G A DDX56 Silent p.R378R 0.31 TCGA-2W-A8YY-01 7 44613521 44613521 C T DDX56 5'UTR 0.44 TCGA-2W-A8YY-01 7 44664054 44664054 C T OGDH Missense_Mutation p.R38W 0.38 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 7 44715575 44715575 G A OGDH Missense_Mutation p.G345R 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 44737282 44737282 G A OGDH Silent p.T753T 0.27 TCGA-2W-A8YY-01 7 44747594 44747594 C T OGDH Missense_Mutation p.S1023L 0.35 deleterious_low_confidence(0) benign(0.032) TCGA-2W-A8YY-01 7 44796036 44796036 C T ZMIZ2 Silent p.F21F 0.45 TCGA-2W-A8YY-01 7 44805112 44805112 G A ZMIZ2 Missense_Mutation p.G726S 0.22 tolerated(0.22) benign(0.013) TCGA-2W-A8YY-01 7 44808728 44808728 C T ZMIZ2 3'UTR 0.35 TCGA-2W-A8YY-01 7 44839354 44839354 G A PPIA Silent p.E81E 0.43 TCGA-2W-A8YY-01 7 44924071 44924071 G A PURB Nonsense_Mutation p.R293* 0.31 TCGA-2W-A8YY-01 7 45011331 45011331 C T MYO1G Missense_Mutation p.G263S 0.43 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 7 45016563 45016563 C T MYO1G Missense_Mutation p.G68D 0.43 deleterious(0.03) probably_damaging(1) TCGA-2W-A8YY-01 7 45124179 45124179 C T NACAD Missense_Mutation p.E534K 0.45 tolerated(0.18) benign(0.035) TCGA-2W-A8YY-01 7 45139978 45139978 G A TBRG4 Silent p.G614G 0.31 TCGA-2W-A8YY-01 7 45216913 45216913 T C RAMP3 Missense_Mutation p.C22R 0.40 deleterious(0.05) unknown(0) TCGA-2W-A8YY-01 7 45216937 45216937 G A RAMP3 Missense_Mutation p.E30K 0.51 deleterious(0.05) probably_damaging(0.998) TCGA-2W-A8YY-01 7 45632385 45632385 G A ADCY1 Missense_Mutation p.G223S 0.40 tolerated(0.61) benign(0.001) TCGA-2W-A8YY-01 7 45697363 45697363 C T ADCY1 Missense_Mutation p.R396C 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 45754243 45754243 C A ADCY1 3'UTR 0.40 TCGA-2W-A8YY-01 7 45761775 45761775 G A ADCY1 3'UTR 0.25 TCGA-2W-A8YY-01 7 45932594 45932594 C T IGFBP1 Silent p.C228C 0.31 TCGA-2W-A8YY-01 7 45932790 45932790 T C IGFBP1 3'UTR 0.31 TCGA-2W-A8YY-01 7 47315064 47315064 G A TNS3 3'UTR 0.29 TCGA-2W-A8YY-01 7 47317646 47317646 C T TNS3 3'UTR 0.42 TCGA-2W-A8YY-01 7 47342969 47342969 C T TNS3 Silent p.A1012A 0.54 TCGA-2W-A8YY-01 7 47408279 47408279 T C TNS3 Missense_Mutation p.D655G 0.27 tolerated(0.14) benign(0.013) TCGA-2W-A8YY-01 7 47568655 47568655 C T TNS3 5'UTR 0.40 TCGA-2W-A8YY-01 7 4780628 4780628 C T FOXK1 Silent p.P240P 0.45 TCGA-2W-A8YY-01 7 47869640 47869640 T C PKD1L1 Missense_Mutation p.M2186V 0.41 tolerated(0.2) benign(0.064) TCGA-2W-A8YY-01 7 47915732 47915732 A G PKD1L1 Silent p.F1249F 0.46 TCGA-2W-A8YY-01 7 4794897 4794897 G A FOXK1 Silent p.A311A 0.44 TCGA-2W-A8YY-01 7 47970821 47970821 G A PKD1L1 Missense_Mutation p.T206M 0.45 tolerated(0.06) benign(0.002) TCGA-2W-A8YY-01 7 4799076 4799076 G A FOXK1 Missense_Mutation p.V516M 0.43 deleterious(0) possibly_damaging(0.674) TCGA-2W-A8YY-01 7 4799219 4799219 G A FOXK1 Silent p.E563E 0.43 TCGA-2W-A8YY-01 7 4800906 4800906 C T FOXK1 Silent p.A636A 0.30 TCGA-2W-A8YY-01 7 48083137 48083137 C T C7orf57 Missense_Mutation p.P101S 0.32 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 48134386 48134386 G A UPP1 Silent p.A2A 0.11 TCGA-2W-A8YY-01 7 4821247 4821247 T C AP5Z1 Silent p.P76P 0.28 TCGA-2W-A8YY-01 7 4827289 4827289 C T AP5Z1 Missense_Mutation p.L446F 0.41 tolerated(0.07) possibly_damaging(0.828) TCGA-2W-A8YY-01 7 4829516 4829516 C T AP5Z1 Silent p.S587S 0.09 TCGA-2W-A8YY-01 7 48311733 48311733 G A ABCA13 Missense_Mutation p.E824K 0.36 benign(0.048) TCGA-2W-A8YY-01 7 48312417 48312417 G A ABCA13 Missense_Mutation p.G1052S 0.37 benign(0.168) TCGA-2W-A8YY-01 7 48316068 48316068 A - ABCA13 Frame_Shift_Del p.T2270Hfs*7 0.32 TCGA-2W-A8YY-01 7 48317814 48317814 A C ABCA13 Missense_Mutation p.K2341N 0.35 benign(0.139) TCGA-2W-A8YY-01 7 4843335 4843335 C T RADIL Missense_Mutation p.D781N 0.43 tolerated(0.25) benign(0.002) TCGA-2W-A8YY-01 7 48528940 48528940 C T ABCA13 Silent p.Y4430Y 0.35 TCGA-2W-A8YY-01 7 4855913 4855913 C T RADIL Missense_Mutation p.A638T 0.09 tolerated(0.05) possibly_damaging(0.879) TCGA-2W-A8YY-01 7 4876198 4876198 C T RADIL Missense_Mutation p.A192T 0.42 tolerated(0.07) benign(0.19) TCGA-2W-A8YY-01 7 4898049 4898049 T - PAPOLB 3'UTR 0.36 TCGA-2W-A8YY-01 7 4900243 4900243 C T PAPOLB Missense_Mutation p.R399Q 0.29 deleterious(0.03) benign(0.1) TCGA-2W-A8YY-01 7 4901208 4901208 G A PAPOLB Silent p.R77R 0.35 TCGA-2W-A8YY-01 7 4947055 4947055 C A MMD2 Missense_Mutation p.S262I 0.23 tolerated(0.09) benign(0.137) TCGA-2W-A8YY-01 7 49977042 49977042 T C ZPBP 3'UTR 0.27 TCGA-2W-A8YY-01 7 50175762 50175762 G A C7orf72 Splice_Site p.X312_splice 0.44 TCGA-2W-A8YY-01 7 50198688 50198688 C T C7orf72 Missense_Mutation p.P414S 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 7 50198772 50198772 C T C7orf72 3'UTR 0.40 TCGA-2W-A8YY-01 7 5036577 5036577 C T RNF216P1 RNA 0.14 TCGA-2W-A8YY-01 7 50435884 50435884 C T IKZF1 Intron 0.32 TCGA-2W-A8YY-01 7 50471782 50471782 C A IKZF1 3'Flank 0.42 TCGA-2W-A8YY-01 7 50471883 50471883 T C IKZF1 3'Flank 0.24 TCGA-2W-A8YY-01 7 50537838 50537838 C T DDC Missense_Mutation p.R358H 0.24 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 50605566 50605566 C T DDC Missense_Mutation p.V143M 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 50658178 50658178 C A GRB10 3'UTR 0.32 TCGA-2W-A8YY-01 7 5097369 5097369 C T RBAK-RBAKDN Missense_Mutation p.P66L 0.31 tolerated(0.12) benign(0.21) TCGA-2W-A8YY-01 7 5105318 5105318 C T RBAK 3'UTR 0.45 TCGA-2W-A8YY-01 7 51096133 51096133 C T COBL Missense_Mutation p.R887K 0.37 tolerated(0.28) benign(0.017) TCGA-2W-A8YY-01 7 51111302 51111302 C T COBL Missense_Mutation p.G395D 0.26 deleterious(0.01) probably_damaging(0.935) TCGA-2W-A8YY-01 7 5112841 5112841 C A RBAK-RBAKDN 3'UTR 0.35 TCGA-2W-A8YY-01 7 51140919 51140919 A C COBL Intron 0.58 TCGA-2W-A8YY-01 7 51152901 51152901 C T COBL Missense_Mutation p.R353H 0.33 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 7 5253931 5253931 C T WIPI2 Intron 0.22 TCGA-2W-A8YY-01 7 5267749 5267749 C T WIPI2 Missense_Mutation p.P343L 0.53 tolerated(0.57) benign(0.005) TCGA-2W-A8YY-01 7 5271545 5271545 C T WIPI2 3'UTR 0.21 TCGA-2W-A8YY-01 7 5336680 5336680 T C SLC29A4 Missense_Mutation p.C245R 0.29 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 7 5336794 5336794 G A SLC29A4 Missense_Mutation p.V283M 0.40 tolerated(0.05) benign(0.378) TCGA-2W-A8YY-01 7 5352724 5352724 G A TNRC18 Missense_Mutation p.R2600C 0.26 unknown(0) TCGA-2W-A8YY-01 7 540110 540111 - T PDGFA Frame_Shift_Ins p.R203Tfs*74 0.17 TCGA-2W-A8YY-01 7 5401275 5401275 G A TNRC18 Silent p.S1537S 0.32 TCGA-2W-A8YY-01 7 55211025 55211025 C A EGFR Missense_Mutation p.L90I 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 5521531 5521531 C T FBXL18 Missense_Mutation p.V678I 0.23 deleterious(0.05) benign(0.037) TCGA-2W-A8YY-01 7 55223619 55223619 G A EGFR Missense_Mutation p.C329Y 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 5529515 5529515 G C FBXL18 Intron 0.45 TCGA-2W-A8YY-01 7 55467708 55467708 C A LANCL2 Missense_Mutation p.L197I 0.31 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 55560074 55560074 C T VOPP1 Missense_Mutation p.A77T 0.33 tolerated(0.06) probably_damaging(0.995) TCGA-2W-A8YY-01 7 5567392 5567392 C T ACTB Missense_Mutation p.R372H 0.32 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-2W-A8YY-01 7 5568242 5568242 C T ACTB Missense_Mutation p.G158R 0.30 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-2W-A8YY-01 7 55752931 55752931 A G RNU6-389P 5'Flank 0.42 TCGA-2W-A8YY-01 7 55886856 55886856 C T SEPT14 Missense_Mutation p.V261I 0.45 deleterious(0.03) possibly_damaging(0.755) TCGA-2W-A8YY-01 7 56066815 56066815 T C GBAS 3'UTR 0.29 TCGA-2W-A8YY-01 7 56085047 56085047 G A PSPH Nonsense_Mutation p.R101* 0.21 TCGA-2W-A8YY-01 7 56125714 56125714 G A CCT6A Missense_Mutation p.G215R 0.47 deleterious(0.04) possibly_damaging(0.788) TCGA-2W-A8YY-01 7 56126172 56126172 C T CCT6A Silent p.V281V 0.18 TCGA-2W-A8YY-01 7 56136199 56136199 T C SUMF2 Missense_Mutation p.V50A 0.31 tolerated_low_confidence(0.05) possibly_damaging(0.858) TCGA-2W-A8YY-01 7 56148901 56148901 G A PHKG1 Missense_Mutation p.P369L 0.11 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 56148944 56148944 G A PHKG1 Missense_Mutation p.R355C 0.25 tolerated(0.06) probably_damaging(0.969) TCGA-2W-A8YY-01 7 5632864 5632864 T C FSCN1 Silent p.G99G 0.42 TCGA-2W-A8YY-01 7 5643575 5643575 G A FSCN1 Missense_Mutation p.R398H 0.39 tolerated(0.37) probably_damaging(0.913) TCGA-2W-A8YY-01 7 5780998 5780998 G A RNF216 Missense_Mutation p.A217V 0.35 tolerated_low_confidence(0.19) benign(0.087) TCGA-2W-A8YY-01 7 589899 589899 T C PRKAR1B 3'UTR 0.47 TCGA-2W-A8YY-01 7 5922231 5922231 G A OCM Missense_Mutation p.G57R 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 5965320 5965320 G A RSPH10B 3'Flank 0.31 TCGA-2W-A8YY-01 7 6027117 6027117 G A PMS2 Missense_Mutation p.R427C 0.33 deleterious(0.01) possibly_damaging(0.453) TCGA-2W-A8YY-01 7 6042179 6042179 G A PMS2 Missense_Mutation p.P148S 0.41 tolerated(0.06) probably_damaging(0.964) TCGA-2W-A8YY-01 7 6057494 6057494 C T AIMP2 Missense_Mutation p.P131L 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-2W-A8YY-01 7 6063046 6063046 C T AIMP2 Silent p.N229N 0.49 TCGA-2W-A8YY-01 7 6063502 6063502 C T EIF2AK1 3'UTR 0.46 TCGA-2W-A8YY-01 7 6089677 6089677 C T EIF2AK1 Splice_Site p.X93_splice 0.11 TCGA-2W-A8YY-01 7 6187438 6187438 G A USP42 Missense_Mutation p.R434H 0.26 tolerated(0.24) probably_damaging(0.992) TCGA-2W-A8YY-01 7 6193432 6193432 G T USP42 Missense_Mutation p.E749D 0.39 tolerated(0.2) benign(0.009) TCGA-2W-A8YY-01 7 6204635 6204635 G A CYTH3 Silent p.S380S 0.14 TCGA-2W-A8YY-01 7 6204936 6204936 C T CYTH3 Silent p.P365P 0.37 TCGA-2W-A8YY-01 7 6205439 6205439 C T CYTH3 Missense_Mutation p.G276R 0.10 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 62751972 62751972 A G ZNF733P RNA 0.08 TCGA-2W-A8YY-01 7 62752141 62752141 C T ZNF733P RNA 0.10 TCGA-2W-A8YY-01 7 62752163 62752163 T G ZNF733P RNA 0.15 TCGA-2W-A8YY-01 7 63727157 63727157 T C ZNF679 Silent p.C382C 0.45 TCGA-2W-A8YY-01 7 63808583 63808583 G T ZNF736 Missense_Mutation p.K114N 0.30 deleterious(0.04) benign(0.4) TCGA-2W-A8YY-01 7 63981630 63981630 C T ZNF680 Missense_Mutation p.R501Q 0.33 tolerated(1) benign(0.01) TCGA-2W-A8YY-01 7 64168298 64168298 G A ZNF107 Missense_Mutation p.R539H 0.53 deleterious(0.01) benign(0.001) TCGA-2W-A8YY-01 7 64349043 64349043 G A RP11-797H7.5 RNA 0.46 TCGA-2W-A8YY-01 7 6442532 6442532 G A RAC1 3'Flank 0.47 TCGA-2W-A8YY-01 7 6443461 6443461 C T RAC1 3'Flank 0.28 TCGA-2W-A8YY-01 7 64438639 64438639 C A ZNF117 Missense_Mutation p.R437I 0.50 tolerated(0.51) benign(0.004) TCGA-2W-A8YY-01 7 6449372 6449372 G A DAGLB 3'UTR 0.36 TCGA-2W-A8YY-01 7 6472562 6472562 G A DAGLB Missense_Mutation p.A236V 0.31 tolerated(0.11) benign(0.119) TCGA-2W-A8YY-01 7 64864074 64864074 C T ZNF92 Silent p.A349A 0.41 TCGA-2W-A8YY-01 7 64864871 64864871 A G ZNF92 3'UTR 0.44 TCGA-2W-A8YY-01 7 65554664 65554664 C T ASL Silent p.G348G 0.45 TCGA-2W-A8YY-01 7 6579456 6579456 G A GRID2IP Silent p.F159F 0.30 TCGA-2W-A8YY-01 7 65824952 65824952 C T TPST1 3'UTR 0.46 TCGA-2W-A8YY-01 7 6621272 6621272 G A ZDHHC4 Missense_Mutation p.R51K 0.26 tolerated(0.09) benign(0.037) TCGA-2W-A8YY-01 7 6621284 6621284 G T ZDHHC4 Missense_Mutation p.G55V 0.22 deleterious(0.01) benign(0.001) TCGA-2W-A8YY-01 7 66240321 66240321 G A KCTD7 Missense_Mutation p.R96H 0.42 tolerated(0.12) possibly_damaging(0.773) TCGA-2W-A8YY-01 7 66270150 66270150 C T KCTD7 Missense_Mutation p.R282C 0.29 deleterious(0.02) benign(0.183) TCGA-2W-A8YY-01 7 6628348 6628348 C T ZDHHC4 Missense_Mutation p.A281V 0.44 tolerated(0.09) benign(0.151) TCGA-2W-A8YY-01 7 66764290 66764290 C T Y_RNA 5'Flank 0.43 TCGA-2W-A8YY-01 7 66785196 66785196 G T STAG3L4 RNA 0.56 TCGA-2W-A8YY-01 7 6731914 6731914 A C ZNF12 Missense_Mutation p.I220S 0.50 tolerated(0.71) benign(0.007) TCGA-2W-A8YY-01 7 6744832 6744832 G T ZNF12 5'UTR 0.35 TCGA-2W-A8YY-01 7 6826561 6826561 T C RSPH10B2 Missense_Mutation p.V640A 0.16 deleterious(0.02) benign(0.024) TCGA-2W-A8YY-01 7 6838066 6838066 G A RSPH10B2 Silent p.K835K 0.47 TCGA-2W-A8YY-01 7 6838853 6838853 C T CCZ1B 3'UTR 0.10 TCGA-2W-A8YY-01 7 6863748 6863748 A G CCZ1B Missense_Mutation p.V121A 0.30 tolerated(0.06) benign(0.043) TCGA-2W-A8YY-01 7 70255031 70255031 C T AUTS2 Silent p.Y943Y 0.50 TCGA-2W-A8YY-01 7 70597877 70597877 C A WBSCR17 Missense_Mutation p.P30H 0.10 tolerated_low_confidence(0.11) benign(0.431) TCGA-2W-A8YY-01 7 71134974 71134974 C T WBSCR17 Silent p.I428I 0.35 TCGA-2W-A8YY-01 7 71251010 71251010 A G CALN1 3'UTR 0.19 TCGA-2W-A8YY-01 7 71571150 71571150 C T CALN1 Missense_Mutation p.R125H 0.17 tolerated(0.09) benign(0.011) TCGA-2W-A8YY-01 7 72277762 72277762 C T TYW1B Missense_Mutation p.G207D 0.35 tolerated(0.21) benign(0.005) TCGA-2W-A8YY-01 7 72419632 72419632 C A POM121 3'UTR 0.33 TCGA-2W-A8YY-01 7 72643676 72643676 C T NCF1B RNA 0.16 TCGA-2W-A8YY-01 7 72643961 72643961 G A NCF1B RNA 0.44 TCGA-2W-A8YY-01 7 72718785 72718785 G C NSUN5 Silent p.G238G 0.30 TCGA-2W-A8YY-01 7 72738453 72738453 G A TRIM50 Silent p.C111C 0.35 TCGA-2W-A8YY-01 7 72849321 72849321 G A FZD9 Silent p.S328S 0.32 TCGA-2W-A8YY-01 7 72849981 72849981 C T FZD9 Silent p.G548G 0.29 TCGA-2W-A8YY-01 7 72856004 72856004 G A BAZ1B 3'UTR 0.17 TCGA-2W-A8YY-01 7 72879796 72879796 C T BAZ1B Missense_Mutation p.S1015N 0.38 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 7 72879797 72879797 T G BAZ1B Missense_Mutation p.S1015R 0.36 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 7 72891452 72891452 C T BAZ1B Missense_Mutation p.R780Q 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 7 72891559 72891559 C A BAZ1B Missense_Mutation p.E744D 0.54 tolerated(0.26) benign(0.061) TCGA-2W-A8YY-01 7 72892201 72892201 C T BAZ1B Silent p.E530E 0.50 TCGA-2W-A8YY-01 7 72892427 72892427 C T BAZ1B Missense_Mutation p.R455Q 0.24 tolerated(0.19) benign(0.178) TCGA-2W-A8YY-01 7 72951489 72951489 C T BCL7B 3'UTR 0.38 TCGA-2W-A8YY-01 7 73013965 73013965 G A MLXIPL Missense_Mutation p.P321L 0.38 deleterious(0.02) benign(0.347) TCGA-2W-A8YY-01 7 73105265 73105265 C T WBSCR22 Missense_Mutation p.L128F 0.30 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 7 73117913 73117913 A G STX1A Intron 0.19 TCGA-2W-A8YY-01 7 73123446 73123446 C T STX1A Missense_Mutation p.D13N 0.15 tolerated(0.22) benign(0.009) TCGA-2W-A8YY-01 7 73151406 73151406 A G ABHD11 Missense_Mutation p.L223P 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 73521385 73521385 C T LIMK1 Silent p.G309G 0.33 TCGA-2W-A8YY-01 7 73535359 73535359 C T LIMK1 Silent p.C587C 0.10 TCGA-2W-A8YY-01 7 73605549 73605549 A G EIF4H Intron 0.11 TCGA-2W-A8YY-01 7 73609547 73609547 C T EIF4H Missense_Mutation p.A219V 0.54 tolerated(0.12) benign(0.395) TCGA-2W-A8YY-01 7 73609590 73609590 C T EIF4H Silent p.F233F 0.26 TCGA-2W-A8YY-01 7 73609789 73609789 T C EIF4H 3'UTR 0.50 TCGA-2W-A8YY-01 7 73638970 73638970 G A LAT2 Silent p.G210G 0.36 TCGA-2W-A8YY-01 7 73653262 73653262 G A RFC2 Silent p.N250N 0.25 TCGA-2W-A8YY-01 7 73661076 73661076 C A RFC2 Missense_Mutation p.R117M 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 73753075 73753075 C T CLIP2 Missense_Mutation p.T140M 0.26 deleterious(0) probably_damaging(0.957) TCGA-2W-A8YY-01 7 73790587 73790587 C T CLIP2 Missense_Mutation p.S619L 0.32 deleterious(0) benign(0.1) TCGA-2W-A8YY-01 7 73811445 73811445 G A CLIP2 Missense_Mutation p.R921H 0.47 deleterious(0) possibly_damaging(0.893) TCGA-2W-A8YY-01 7 73820007 73820007 G A CLIP2 3'UTR 0.28 TCGA-2W-A8YY-01 7 74193643 74193643 C T NCF1 Silent p.R90R 0.36 TCGA-2W-A8YY-01 7 74991282 74991282 G A STAG3L1 RNA 0.30 TCGA-2W-A8YY-01 7 75178232 75178232 G A HIP1 Missense_Mutation p.A788V 0.35 deleterious(0.04) benign(0.15) TCGA-2W-A8YY-01 7 75401315 75401315 C T CCL26 Missense_Mutation p.S27N 0.25 deleterious(0.04) possibly_damaging(0.76) TCGA-2W-A8YY-01 7 75610009 75610009 C T POR Intron 0.10 TCGA-2W-A8YY-01 7 75611583 75611583 C T POR Missense_Mutation p.A258V 0.42 tolerated(0.29) benign(0) TCGA-2W-A8YY-01 7 75613146 75613146 C T POR Silent p.D346D 0.31 TCGA-2W-A8YY-01 7 75692873 75692873 G A MDH2 Missense_Mutation p.G199D 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 75695763 75695763 T C MDH2 3'UTR 0.42 TCGA-2W-A8YY-01 7 7571374 7571374 G T COL28A1 Missense_Mutation p.L96I 0.43 tolerated(0.08) probably_damaging(0.999) TCGA-2W-A8YY-01 7 75914998 75914998 C T SRRM3 3'UTR 0.35 TCGA-2W-A8YY-01 7 76110039 76110039 G A DTX2 Silent p.S71S 0.33 TCGA-2W-A8YY-01 7 76112259 76112259 G A DTX2 Missense_Mutation p.A235T 0.31 tolerated(0.3) benign(0.008) TCGA-2W-A8YY-01 7 76239484 76239484 C A POMZP3 3'UTR 0.15 TCGA-2W-A8YY-01 7 76255351 76255351 C T POMZP3 Missense_Mutation p.A11T 0.33 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 7 7645623 7645623 G A MIOS Missense_Mutation p.A818T 0.37 tolerated(1) benign(0.032) TCGA-2W-A8YY-01 7 76629630 76629630 G A UPK3B Intron 0.27 TCGA-2W-A8YY-01 7 77261720 77261720 G A PTPN12 Silent p.S684S 0.35 TCGA-2W-A8YY-01 7 77408292 77408292 G A RSBN1L Missense_Mutation p.G783D 0.27 tolerated_low_confidence(0.25) possibly_damaging(0.471) TCGA-2W-A8YY-01 7 77539627 77539627 A G PHTF2 Missense_Mutation p.N192S 0.53 tolerated(0.46) benign(0.12) TCGA-2W-A8YY-01 7 77569897 77569897 G A PHTF2 Missense_Mutation p.R564Q 0.29 tolerated(0.06) probably_damaging(0.983) TCGA-2W-A8YY-01 7 7916937 7916937 T C RPA3-AS1 Missense_Mutation p.V26A 0.32 tolerated(0.09) benign(0.006) TCGA-2W-A8YY-01 7 796578 796578 G A HEATR2 Missense_Mutation p.A473T 0.20 tolerated(0.58) benign(0.001) TCGA-2W-A8YY-01 7 803598 803598 C T HEATR2 Silent p.I590I 0.10 TCGA-2W-A8YY-01 7 80430090 80430090 G A SEMA3C Silent p.G323G 0.11 TCGA-2W-A8YY-01 7 80546111 80546111 C T SEMA3C 5'UTR 0.37 TCGA-2W-A8YY-01 7 8125961 8125961 C T GLCCI1 Silent p.N479N 0.13 TCGA-2W-A8YY-01 7 8126420 8126420 T G GLCCI1 3'UTR 0.46 TCGA-2W-A8YY-01 7 81381472 81381472 G A HGF Missense_Mutation p.R197C 0.09 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 7 82389990 82389990 G A PCLO Nonsense_Mutation p.R5085* 0.36 TCGA-2W-A8YY-01 7 82544529 82544529 G T PCLO Missense_Mutation p.S4258Y 0.31 unknown(0) TCGA-2W-A8YY-01 7 8257949 8257949 C T ICA1 Missense_Mutation p.E189K 0.35 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 7 82584437 82584437 C A PCLO Missense_Mutation p.E1944D 0.45 unknown(0) TCGA-2W-A8YY-01 7 82586060 82586060 A C PCLO Silent p.P1403P 0.37 TCGA-2W-A8YY-01 7 82595088 82595089 - T PCLO Frame_Shift_Ins p.T1339Nfs*6 0.32 TCGA-2W-A8YY-01 7 82595552 82595552 T G PCLO Missense_Mutation p.K1184N 0.34 unknown(0) TCGA-2W-A8YY-01 7 83592569 83592569 C T SEMA3A Silent p.A604A 0.44 TCGA-2W-A8YY-01 7 83606510 83606510 C T SEMA3A Missense_Mutation p.R552H 0.24 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 7 84694789 84694789 A G SEMA3D Silent p.H223H 0.47 TCGA-2W-A8YY-01 7 84702300 84702300 A G SEMA3D Missense_Mutation p.I158T 0.26 deleterious(0) benign(0.252) TCGA-2W-A8YY-01 7 86493774 86493775 - T GRM3 3'UTR 0.18 TCGA-2W-A8YY-01 7 86509519 86509519 A G KIAA1324L 3'UTR 0.08 TCGA-2W-A8YY-01 7 86526933 86526933 A G KIAA1324L Silent p.G858G 0.38 TCGA-2W-A8YY-01 7 86568160 86568160 C T KIAA1324L Missense_Mutation p.E322K 0.41 tolerated(0.27) benign(0.007) TCGA-2W-A8YY-01 7 86574363 86574363 C T KIAA1324L Splice_Site p.X169_splice 0.38 TCGA-2W-A8YY-01 7 86808948 86808948 C T DMTF1 Silent p.L203L 0.14 TCGA-2W-A8YY-01 7 86823164 86823164 G A DMTF1 Missense_Mutation p.D592N 0.36 tolerated_low_confidence(0.18) benign(0.006) TCGA-2W-A8YY-01 7 86974698 86974698 G T CROT 5'Flank 0.28 TCGA-2W-A8YY-01 7 86978418 86978418 C T CROT Nonsense_Mutation p.R12* 0.18 TCGA-2W-A8YY-01 7 86988702 86988702 T G CROT Intron 0.30 TCGA-2W-A8YY-01 7 87005148 87005148 G A CROT Missense_Mutation p.R280Q 0.43 deleterious(0) probably_damaging(0.982) TCGA-2W-A8YY-01 7 87047930 87047930 T C ABCB4 Missense_Mutation p.S801G 0.47 tolerated(1) benign(0.02) TCGA-2W-A8YY-01 7 87160640 87160640 T G ABCB1 Missense_Mutation p.K885N 0.52 deleterious(0.01) possibly_damaging(0.894) TCGA-2W-A8YY-01 7 87174203 87174203 G A ABCB1 Missense_Mutation p.S667L 0.35 deleterious(0.03) benign(0.006) TCGA-2W-A8YY-01 7 87175253 87175253 C T ABCB1 Missense_Mutation p.V605I 0.22 tolerated(0.22) benign(0.003) TCGA-2W-A8YY-01 7 87465470 87465470 A C SLC25A40 3'UTR 0.33 TCGA-2W-A8YY-01 7 87607717 87607717 G A ADAM22 Missense_Mutation p.V105M 0.08 tolerated(0.07) benign(0.003) TCGA-2W-A8YY-01 7 87810896 87810896 C T ADAM22 Nonsense_Mutation p.R829* 0.35 TCGA-2W-A8YY-01 7 87822510 87822510 C T ADAM22 Missense_Mutation p.P886S 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 87839418 87839418 T C SRI Missense_Mutation p.N93D 0.40 deleterious(0.02) benign(0.063) TCGA-2W-A8YY-01 7 87912206 87912206 C T STEAP4 Missense_Mutation p.R245H 0.41 tolerated(0.14) benign(0.006) TCGA-2W-A8YY-01 7 87913140 87913140 C T STEAP4 Missense_Mutation p.A149T 0.49 deleterious(0.02) possibly_damaging(0.53) TCGA-2W-A8YY-01 7 8791557 8791557 G A NXPH1 3'UTR 0.36 TCGA-2W-A8YY-01 7 881710 881710 C T SUN1 Missense_Mutation p.P132S 0.10 tolerated(0.89) benign(0.066) TCGA-2W-A8YY-01 7 88389169 88389169 C T ZNF804B 5'UTR 0.28 TCGA-2W-A8YY-01 7 88389210 88389210 T C ZNF804B 5'UTR 0.32 TCGA-2W-A8YY-01 7 891670 891670 C T SUN1 Missense_Mutation p.L281F 0.45 tolerated(0.11) probably_damaging(0.928) TCGA-2W-A8YY-01 7 89748934 89748935 - C RP5-1121E10.2 Intron 0.20 TCGA-2W-A8YY-01 7 89856284 89856284 G T STEAP2 Splice_Site p.X165_splice 0.24 TCGA-2W-A8YY-01 7 89866792 89866792 C T STEAP2 3'UTR 0.43 TCGA-2W-A8YY-01 7 90492520 90492520 A G CDK14 Missense_Mutation p.N174S 0.49 deleterious(0.01) probably_damaging(0.993) TCGA-2W-A8YY-01 7 90895605 90895605 C T FZD1 Silent p.G470G 0.45 TCGA-2W-A8YY-01 7 90895761 90895761 C T FZD1 Silent p.H522H 0.35 TCGA-2W-A8YY-01 7 91503708 91503708 G A MTERF Missense_Mutation p.R134C 0.11 tolerated(0.16) possibly_damaging(0.84) TCGA-2W-A8YY-01 7 91631937 91631937 G A AKAP9 Silent p.L902L 0.30 TCGA-2W-A8YY-01 7 91660865 91660865 G A AKAP9 Missense_Mutation p.V1429I 0.33 benign(0.02) TCGA-2W-A8YY-01 7 91699490 91699490 G A AKAP9 Silent p.A2159A 0.36 TCGA-2W-A8YY-01 7 91715584 91715584 C T AKAP9 Nonsense_Mutation p.R3023* 0.46 TCGA-2W-A8YY-01 7 91726129 91726129 G A AKAP9 Missense_Mutation p.A3286T 0.33 benign(0.144) TCGA-2W-A8YY-01 7 91726284 91726284 A G AKAP9 Silent p.P3337P 0.42 TCGA-2W-A8YY-01 7 91742948 91742948 A G CYP51A1 3'UTR 0.56 TCGA-2W-A8YY-01 7 91774245 91774245 T C LRRD1 Missense_Mutation p.K847R 0.31 tolerated(0.08) benign(0.346) TCGA-2W-A8YY-01 7 91793224 91793224 T A LRRD1 Silent p.V431V 0.27 TCGA-2W-A8YY-01 7 91852217 91852217 C A KRIT1 Missense_Mutation p.V444L 0.31 deleterious(0.01) benign(0.253) TCGA-2W-A8YY-01 7 92027788 92027788 T G ANKIB1 Missense_Mutation p.F932C 0.55 tolerated_low_confidence(0.05) benign(0.312) TCGA-2W-A8YY-01 7 92099094 92099094 G A ERVW-1 Missense_Mutation p.P201L 0.18 deleterious(0.02) benign(0.217) TCGA-2W-A8YY-01 7 92143170 92143170 C A PEX1 Nonsense_Mutation p.E451* 0.26 TCGA-2W-A8YY-01 7 92244301 92244301 G A CDK6 3'UTR 0.40 TCGA-2W-A8YY-01 7 92733048 92733048 C T SAMD9 Missense_Mutation p.R788H 0.09 tolerated(1) benign(0) TCGA-2W-A8YY-01 7 92735096 92735096 T C SAMD9 Silent p.E105E 0.08 TCGA-2W-A8YY-01 7 92763584 92763584 G A SAMD9L Silent p.F567F 0.27 TCGA-2W-A8YY-01 7 93518454 93518454 C T TFPI2 Missense_Mutation p.S118N 0.45 tolerated(0.12) possibly_damaging(0.787) TCGA-2W-A8YY-01 7 93628523 93628523 G A BET1 Missense_Mutation p.L35F 0.25 deleterious(0.03) probably_damaging(0.932) TCGA-2W-A8YY-01 7 93628532 93628532 T G BET1 Missense_Mutation p.N32H 0.25 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 94054937 94054937 G A COL1A2 Missense_Mutation p.D933N 0.54 unknown(0) TCGA-2W-A8YY-01 7 94268743 94268743 C T SGCE Intron 0.35 TCGA-2W-A8YY-01 7 94294206 94294206 C T PEG10 3'UTR 0.19 TCGA-2W-A8YY-01 7 94295246 94295246 C A PEG10 3'UTR 0.40 TCGA-2W-A8YY-01 7 94539496 94539496 G A PPP1R9A Missense_Mutation p.R24Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 7 94539679 94539679 C T PPP1R9A Missense_Mutation p.A85V 0.32 deleterious(0.02) possibly_damaging(0.864) TCGA-2W-A8YY-01 7 94898016 94898016 A G PPP1R9A Silent p.R940R 0.09 TCGA-2W-A8YY-01 7 94903279 94903279 C T PPP1R9A Missense_Mutation p.R1065W 0.41 deleterious(0) possibly_damaging(0.761) TCGA-2W-A8YY-01 7 94913500 94913500 C T PPP1R9A Missense_Mutation p.T1156I 0.10 deleterious(0.02) benign(0.005) TCGA-2W-A8YY-01 7 94924376 94924376 C T PPP1R9A 3'Flank 0.37 TCGA-2W-A8YY-01 7 94925214 94925215 - T PPP1R9A 3'Flank 0.20 TCGA-2W-A8YY-01 7 94925324 94925325 - T PPP1R9A 3'Flank 0.27 TCGA-2W-A8YY-01 7 94928262 94928262 C A PON1 Missense_Mutation p.E354D 0.10 tolerated(0.41) benign(0.005) TCGA-2W-A8YY-01 7 95001599 95001599 T - PON3 Frame_Shift_Del p.I85Sfs*3 0.09 TCGA-2W-A8YY-01 7 95668662 95668662 G A DYNC1I1 Missense_Mutation p.G497S 0.39 tolerated(0.07) probably_damaging(1) TCGA-2W-A8YY-01 7 95727419 95727419 G A DYNC1I1 3'UTR 0.44 TCGA-2W-A8YY-01 7 97481702 97481702 G A ASNS Missense_Mutation p.R519C 0.27 deleterious(0) possibly_damaging(0.88) TCGA-2W-A8YY-01 7 97482496 97482496 G A ASNS Missense_Mutation p.T451M 0.33 deleterious(0) possibly_damaging(0.623) TCGA-2W-A8YY-01 7 97484728 97484728 G A ASNS Silent p.S358S 0.17 TCGA-2W-A8YY-01 7 97488580 97488580 G A ASNS Silent p.H206H 0.45 TCGA-2W-A8YY-01 7 97822283 97822283 A G LMTK2 Missense_Mutation p.T836A 0.43 tolerated(0.57) benign(0.019) TCGA-2W-A8YY-01 7 97847111 97847111 C T TECPR1 Missense_Mutation p.A1093T 0.46 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 97854124 97854124 G A TECPR1 Silent p.S893S 0.15 TCGA-2W-A8YY-01 7 97854402 97854402 C T TECPR1 Silent p.T842T 0.34 TCGA-2W-A8YY-01 7 97873932 97873932 C T TECPR1 Missense_Mutation p.R161Q 0.31 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 7 97874378 97874378 C T TECPR1 Missense_Mutation p.R76H 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 7 98254345 98254345 T C NPTX2 Missense_Mutation p.I252T 0.47 deleterious(0.02) benign(0.1) TCGA-2W-A8YY-01 7 98257720 98257720 G A NPTX2 Missense_Mutation p.V359M 0.39 deleterious(0.02) possibly_damaging(0.844) TCGA-2W-A8YY-01 7 98259105 98259105 G A NPTX2 3'UTR 0.50 TCGA-2W-A8YY-01 7 98550973 98550973 G A TRRAP Missense_Mutation p.D1876N 0.13 probably_damaging(1) TCGA-2W-A8YY-01 7 98553837 98553837 G A TRRAP Silent p.T1995T 0.40 TCGA-2W-A8YY-01 7 98562372 98562372 C T TRRAP Missense_Mutation p.A2310V 0.37 benign(0.015) TCGA-2W-A8YY-01 7 98591217 98591217 C A TRRAP Missense_Mutation p.P3288T 0.24 benign(0.011) TCGA-2W-A8YY-01 7 98608792 98608792 T C TRRAP Missense_Mutation p.F3672L 0.38 benign(0.003) TCGA-2W-A8YY-01 7 98608854 98608854 C - TRRAP Frame_Shift_Del p.E3694Rfs*12 0.29 TCGA-2W-A8YY-01 7 98609859 98609859 C T TRRAP Missense_Mutation p.R3821C 0.41 probably_damaging(1) TCGA-2W-A8YY-01 7 98630692 98630692 C T SMURF1 Silent p.A714A 0.44 TCGA-2W-A8YY-01 7 98633219 98633219 C T SMURF1 Missense_Mutation p.D670N 0.28 tolerated(0.06) benign(0.042) TCGA-2W-A8YY-01 7 98633248 98633248 C T SMURF1 Missense_Mutation p.R660Q 0.37 tolerated(0.87) benign(0.003) TCGA-2W-A8YY-01 7 98951713 98951713 G A ARPC1A Missense_Mutation p.V228M 0.38 deleterious(0.01) possibly_damaging(0.578) TCGA-2W-A8YY-01 7 98988801 98988801 C T ARPC1B Silent p.A236A 0.32 TCGA-2W-A8YY-01 7 98988811 98988811 C A ARPC1B Missense_Mutation p.L240M 0.33 deleterious(0) possibly_damaging(0.557) TCGA-2W-A8YY-01 7 98995632 98995632 C T PDAP1 Missense_Mutation p.E114K 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-2W-A8YY-01 7 99015179 99015179 G A BUD31 Silent p.T115T 0.49 TCGA-2W-A8YY-01 7 99023233 99023233 G A ATP5J2-PTCD1 Missense_Mutation p.R357W 0.50 deleterious(0.01) probably_damaging(0.949) TCGA-2W-A8YY-01 7 99036697 99036697 G A CPSF4 5'UTR 0.41 TCGA-2W-A8YY-01 7 99084555 99084555 G T ZNF789 Missense_Mutation p.R241L 0.27 tolerated(0.07) benign(0.23) TCGA-2W-A8YY-01 7 99097537 99097537 G A ZNF394 Silent p.P60P 0.34 TCGA-2W-A8YY-01 7 99129116 99129116 A G ZKSCAN5 Silent p.Q588Q 0.17 TCGA-2W-A8YY-01 7 99221781 99221781 G A ZSCAN25 Silent p.P261P 0.47 TCGA-2W-A8YY-01 7 99260466 99260466 T G CYP3A5 Missense_Mutation p.N280H 0.45 deleterious(0.02) benign(0.104) TCGA-2W-A8YY-01 7 99272164 99272164 T G CYP3A5 Missense_Mutation p.K70N 0.38 tolerated(0.09) benign(0.203) TCGA-2W-A8YY-01 7 99355698 99355698 C A CYP3A4 3'UTR 0.53 TCGA-2W-A8YY-01 7 99474176 99474176 C T OR2AE1 Missense_Mutation p.A161T 0.36 tolerated(0.17) benign(0.01) TCGA-2W-A8YY-01 7 99632569 99632569 G A ZKSCAN1 3'UTR 0.41 TCGA-2W-A8YY-01 7 99632587 99632587 C T ZKSCAN1 3'UTR 0.48 TCGA-2W-A8YY-01 7 99669670 99669670 T C ZNF3 Missense_Mutation p.E146G 0.49 tolerated(0.23) benign(0.001) TCGA-2W-A8YY-01 7 99669702 99669702 A G ZNF3 Silent p.S135S 0.14 TCGA-2W-A8YY-01 7 99705142 99705142 G A TAF6 Silent p.T624T 0.43 TCGA-2W-A8YY-01 7 99705219 99705219 C T TAF6 Missense_Mutation p.G599S 0.42 tolerated_low_confidence(0.32) benign(0.068) TCGA-2W-A8YY-01 7 99711987 99711987 G A TAF6 Intron 0.27 TCGA-2W-A8YY-01 7 99725965 99725965 G A MBLAC1 3'UTR 0.25 TCGA-2W-A8YY-01 7 99754100 99754100 G A C7orf43 Silent p.Y383Y 0.24 TCGA-2W-A8YY-01 7 99758396 99758396 C T GAL3ST4 Missense_Mutation p.A206T 0.28 tolerated(0.08) possibly_damaging(0.821) TCGA-2W-A8YY-01 7 99792971 99792971 G A STAG3 Missense_Mutation p.A303T 0.38 deleterious(0.05) possibly_damaging(0.526) TCGA-2W-A8YY-01 7 99809082 99809082 G T STAG3 Missense_Mutation p.E1145D 0.30 deleterious_low_confidence(0.02) benign(0.008) TCGA-2W-A8YY-01 7 99818281 99818281 G A PVRIG Missense_Mutation p.R194H 0.42 tolerated(0.74) benign(0.252) TCGA-2W-A8YY-01 7 99998570 99998570 G T ZCWPW1 3'UTR 0.55 TCGA-2W-A8YY-01 8 100133548 100133548 G A VPS13B Missense_Mutation p.D361N 0.40 tolerated(0.08) possibly_damaging(0.821) TCGA-2W-A8YY-01 8 100147940 100147940 C T VPS13B Silent p.I514I 0.25 TCGA-2W-A8YY-01 8 100520130 100520130 C A VPS13B Missense_Mutation p.F1430L 0.52 tolerated(0.52) possibly_damaging(0.483) TCGA-2W-A8YY-01 8 100523416 100523416 C T VPS13B Missense_Mutation p.R1462C 0.42 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 8 100533196 100533196 A G VPS13B Missense_Mutation p.D1593G 0.35 deleterious(0) probably_damaging(0.956) TCGA-2W-A8YY-01 8 100866135 100866135 A G VPS13B Silent p.L3531L 0.39 TCGA-2W-A8YY-01 8 100866147 100866147 C T VPS13B Silent p.D3535D 0.10 TCGA-2W-A8YY-01 8 101153400 101153400 T C FBXO43 Missense_Mutation p.K361R 0.50 tolerated(0.07) benign(0.12) TCGA-2W-A8YY-01 8 101154329 101154329 C T FBXO43 Silent p.A51A 0.45 TCGA-2W-A8YY-01 8 101271192 101271192 C T RNF19A Silent p.T703T 0.44 TCGA-2W-A8YY-01 8 101585128 101585128 T C SNX31 3'UTR 0.58 TCGA-2W-A8YY-01 8 101586030 101586030 C T SNX31 3'UTR 0.57 TCGA-2W-A8YY-01 8 101724923 101724923 C T PABPC1 Missense_Mutation p.R278H 0.40 tolerated(0.09) benign(0.04) TCGA-2W-A8YY-01 8 101960829 101960829 C T YWHAZ Missense_Mutation p.V97I 0.35 tolerated_low_confidence(0.45) possibly_damaging(0.737) TCGA-2W-A8YY-01 8 102679592 102679592 A C GRHL2 3'UTR 0.33 TCGA-2W-A8YY-01 8 103265930 103265930 G A UBR5 3'UTR 0.38 TCGA-2W-A8YY-01 8 103287998 103287998 G A UBR5 Missense_Mutation p.R2190C 0.39 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 8 103317496 103317496 G A UBR5 Missense_Mutation p.R882C 0.37 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 8 103338828 103338829 - T UBR5 Frame_Shift_Ins p.P516Afs*2 0.29 TCGA-2W-A8YY-01 8 103424403 103424403 G A UBR5 Silent p.D20D 0.38 TCGA-2W-A8YY-01 8 103663622 103663622 G A KLF10 Missense_Mutation p.P313L 0.33 deleterious(0) possibly_damaging(0.904) TCGA-2W-A8YY-01 8 103664270 103664270 C T KLF10 Missense_Mutation p.S97N 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 10383158 10383158 G A PRSS55 Silent p.R21R 0.44 TCGA-2W-A8YY-01 8 103840783 103840783 G A AZIN1 3'UTR 0.26 TCGA-2W-A8YY-01 8 10387100 10387100 C T PRSS55 Missense_Mutation p.P80S 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 104225259 104225259 G T BAALC Missense_Mutation p.Q91H 0.34 deleterious(0.03) probably_damaging(0.976) TCGA-2W-A8YY-01 8 104412648 104412648 C A SLC25A32 Missense_Mutation p.K313N 0.38 tolerated_low_confidence(0.23) benign(0.001) TCGA-2W-A8YY-01 8 104413862 104413862 C T SLC25A32 Missense_Mutation p.A232T 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 104427193 104427193 G A DCAF13 5'UTR 0.50 TCGA-2W-A8YY-01 8 10465788 10465788 G A RP1L1 Silent p.A1940A 0.25 TCGA-2W-A8YY-01 8 10466278 10466278 T C RP1L1 Missense_Mutation p.H1777R 0.27 unknown(0) TCGA-2W-A8YY-01 8 10469144 10469144 G A RP1L1 Nonsense_Mutation p.R822* 0.26 TCGA-2W-A8YY-01 8 10469209 10469209 G A RP1L1 Missense_Mutation p.P800L 0.39 benign(0.13) TCGA-2W-A8YY-01 8 10469236 10469236 C T RP1L1 Missense_Mutation p.S791N 0.25 possibly_damaging(0.499) TCGA-2W-A8YY-01 8 10470703 10470703 G A RP1L1 Missense_Mutation p.P302L 0.38 probably_damaging(0.983) TCGA-2W-A8YY-01 8 104709387 104709387 G T RIMS2 Nonsense_Mutation p.E84* 0.36 TCGA-2W-A8YY-01 8 104897620 104897620 G A RIMS2 Missense_Mutation p.A265T 0.33 tolerated_low_confidence(0.32) benign(0.005) TCGA-2W-A8YY-01 8 104987583 104987583 C T RIMS2 Nonsense_Mutation p.R926* 0.53 TCGA-2W-A8YY-01 8 105160921 105160921 G A RIMS2 Intron 0.26 TCGA-2W-A8YY-01 8 105264151 105264151 T G RIMS2 3'Flank 0.41 TCGA-2W-A8YY-01 8 105393494 105393494 C T DPYS Missense_Mutation p.A498T 0.37 tolerated(0.39) benign(0.001) TCGA-2W-A8YY-01 8 105393518 105393518 G A DPYS Missense_Mutation p.R490C 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 10584031 10584031 G A SOX7 Silent p.R180R 0.55 TCGA-2W-A8YY-01 8 10584110 10584110 C T SOX7 Missense_Mutation p.R154H 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 106813782 106813782 C A ZFPM2 Missense_Mutation p.S491Y 0.41 deleterious(0.03) benign(0.309) TCGA-2W-A8YY-01 8 106815653 106815653 C T ZFPM2 Missense_Mutation p.P1115S 0.35 tolerated_low_confidence(0.5) benign(0.003) TCGA-2W-A8YY-01 8 10756295 10756295 G T XKR6 Missense_Mutation p.L365I 0.33 deleterious(0.01) possibly_damaging(0.519) TCGA-2W-A8YY-01 8 107719074 107719074 G A OXR1 Missense_Mutation p.S443N 0.45 tolerated(0.28) benign(0.002) TCGA-2W-A8YY-01 8 107751777 107751777 C T OXR1 Missense_Mutation p.P711L 0.39 deleterious(0.02) possibly_damaging(0.76) TCGA-2W-A8YY-01 8 107781973 107781973 C A ABRA Missense_Mutation p.R149I 0.54 deleterious(0) possibly_damaging(0.777) TCGA-2W-A8YY-01 8 1087358 1087358 G A CTD-2281E23.2 Intron 0.33 TCGA-2W-A8YY-01 8 108911769 108911769 G A RSPO2 3'UTR 0.54 TCGA-2W-A8YY-01 8 109094892 109094892 G A RSPO2 5'UTR 0.50 TCGA-2W-A8YY-01 8 10986427 10986427 T G AF131215.5 Silent p.R43R 0.38 TCGA-2W-A8YY-01 8 110477181 110477181 C T PKHD1L1 Missense_Mutation p.A2707V 0.34 deleterious(0.01) benign(0.023) TCGA-2W-A8YY-01 8 110535505 110535505 C T PKHD1L1 Missense_Mutation p.A4125V 0.37 deleterious(0) possibly_damaging(0.77) TCGA-2W-A8YY-01 8 110573148 110573148 G T EBAG9 Nonsense_Mutation p.E171* 0.09 TCGA-2W-A8YY-01 8 110576918 110576918 G T EBAG9 3'UTR 0.60 TCGA-2W-A8YY-01 8 110631191 110631191 A G SYBU Missense_Mutation p.F103L 0.22 tolerated(0.11) probably_damaging(0.997) TCGA-2W-A8YY-01 8 11163708 11163708 C T MTMR9 Nonsense_Mutation p.R201* 0.30 TCGA-2W-A8YY-01 8 11167174 11167174 C T MTMR9 Silent p.C316C 0.13 TCGA-2W-A8YY-01 8 11185220 11185220 A G MTMR9 3'UTR 0.48 TCGA-2W-A8YY-01 8 11189634 11189634 A C SLC35G5 3'UTR 0.24 TCGA-2W-A8YY-01 8 11213653 11213653 C T TDH RNA 0.50 TCGA-2W-A8YY-01 8 11222452 11222452 G A C8orf12 5'Flank 0.25 TCGA-2W-A8YY-01 8 11301916 11301916 G A FAM167A Missense_Mutation p.S2F 0.26 deleterious(0) possibly_damaging(0.757) TCGA-2W-A8YY-01 8 113484927 113484927 C T CSMD3 Missense_Mutation p.G1763E 0.47 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 8 113563098 113563098 G A CSMD3 Nonsense_Mutation p.Q1456* 0.38 TCGA-2W-A8YY-01 8 113649179 113649179 G A CSMD3 Silent p.I1194I 0.34 TCGA-2W-A8YY-01 8 113650979 113650979 G A CSMD3 Missense_Mutation p.R1158C 0.42 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 8 11403612 11403612 G A BLK Missense_Mutation p.D59N 0.31 tolerated(0.39) benign(0.011) TCGA-2W-A8YY-01 8 11637235 11637235 C T NEIL2 Silent p.V89V 0.49 TCGA-2W-A8YY-01 8 116422447 116422447 A C TRPS1 3'UTR 0.27 TCGA-2W-A8YY-01 8 116424721 116424721 T C TRPS1 3'UTR 0.33 TCGA-2W-A8YY-01 8 116599270 116599270 C T TRPS1 Silent p.S886S 0.22 TCGA-2W-A8YY-01 8 116599752 116599752 T C TRPS1 Missense_Mutation p.T726A 0.46 tolerated_low_confidence(0.21) benign(0.011) TCGA-2W-A8YY-01 8 11660365 11660365 C T FDFT1 Silent p.G8G 0.10 TCGA-2W-A8YY-01 8 116631583 116631583 C T TRPS1 Missense_Mutation p.D248N 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 8 116632055 116632055 G A TRPS1 Silent p.S90S 0.36 TCGA-2W-A8YY-01 8 117658724 117658724 G A EIF3H Missense_Mutation p.S316L 0.38 deleterious(0.02) benign(0.085) TCGA-2W-A8YY-01 8 117875450 117875450 G A RAD21 Nonsense_Mutation p.R65* 0.24 TCGA-2W-A8YY-01 8 117887188 117887189 CT - RAD21 5'Flank 0.31 TCGA-2W-A8YY-01 8 117954801 117954801 A T AARD Missense_Mutation p.E110V 0.22 deleterious(0) benign(0.031) TCGA-2W-A8YY-01 8 11970605 11970605 G T ZNF705D Nonsense_Mutation p.E281* 0.20 TCGA-2W-A8YY-01 8 119938731 119938731 A G TNFRSF11B Splice_Site p.X273_splice 0.35 TCGA-2W-A8YY-01 8 11994798 11994798 G A USP17L2 Missense_Mutation p.S491L 0.19 deleterious(0.02) benign(0.069) TCGA-2W-A8YY-01 8 11995564 11995564 C T USP17L2 Missense_Mutation p.A236T 0.21 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 11995746 11995746 G A USP17L2 Missense_Mutation p.A175V 0.12 tolerated(0.08) benign(0.38) TCGA-2W-A8YY-01 8 120114637 120114637 G T COLEC10 Missense_Mutation p.A115S 0.28 deleterious(0.05) benign(0.027) TCGA-2W-A8YY-01 8 120233866 120233866 A G MAL2 Missense_Mutation p.N58D 0.38 tolerated(0.07) possibly_damaging(0.601) TCGA-2W-A8YY-01 8 120233881 120233881 C T MAL2 Silent p.L63L 0.11 TCGA-2W-A8YY-01 8 120257003 120257003 C T MAL2 3'UTR 0.47 TCGA-2W-A8YY-01 8 120605991 120605991 C T ENPP2 Splice_Site p.X413_splice 0.34 TCGA-2W-A8YY-01 8 120800688 120800689 - T TAF2 Splice_Site p.X562_splice 0.29 TCGA-2W-A8YY-01 8 121530328 121530328 G A MTBP Silent p.Q828Q 0.41 TCGA-2W-A8YY-01 8 121551172 121551172 A - SNTB1 Frame_Shift_Del p.F521Sfs*38 0.29 TCGA-2W-A8YY-01 8 12285216 12285216 G A FAM86B2 Missense_Mutation p.A281V 0.39 deleterious(0.01) benign(0.106) TCGA-2W-A8YY-01 8 12285277 12285277 C T FAM86B2 Missense_Mutation p.G261R 0.04 tolerated(0.4) benign(0.036) TCGA-2W-A8YY-01 8 123965901 123965901 C T ZHX2 Silent p.A717A 0.09 TCGA-2W-A8YY-01 8 124026514 124026514 A G DERL1 3'UTR 0.33 TCGA-2W-A8YY-01 8 124026525 124026525 A G DERL1 3'UTR 0.10 TCGA-2W-A8YY-01 8 124109635 124109635 G A TBC1D31 Missense_Mutation p.R262H 0.32 deleterious(0.01) possibly_damaging(0.75) TCGA-2W-A8YY-01 8 124117531 124117531 C T TBC1D31 Missense_Mutation p.P346S 0.28 tolerated(0.06) benign(0.089) TCGA-2W-A8YY-01 8 124204159 124204159 G A FAM83A Silent p.K199K 0.16 TCGA-2W-A8YY-01 8 124238613 124238613 G A ZHX1-C8ORF76 3'UTR 0.45 TCGA-2W-A8YY-01 8 124267028 124267028 T C ZHX1 Missense_Mutation p.T387A 0.43 deleterious(0) possibly_damaging(0.688) TCGA-2W-A8YY-01 8 124332940 124332940 A C ATAD2 3'UTR 0.48 TCGA-2W-A8YY-01 8 124346560 124346560 G A ATAD2 Missense_Mutation p.R1072C 0.36 deleterious(0.02) probably_damaging(0.983) TCGA-2W-A8YY-01 8 124349903 124349903 G A ATAD2 Nonsense_Mutation p.R1005* 0.36 TCGA-2W-A8YY-01 8 124359626 124359626 T C ATAD2 Missense_Mutation p.K640E 0.38 deleterious(0) possibly_damaging(0.636) TCGA-2W-A8YY-01 8 124360456 124360456 T C ATAD2 Missense_Mutation p.T622A 0.32 tolerated(0.84) benign(0.001) TCGA-2W-A8YY-01 8 124659247 124659247 T C KLHL38 Missense_Mutation p.H453R 0.20 deleterious(0.05) benign(0.008) TCGA-2W-A8YY-01 8 124705957 124705957 C T ANXA13 Silent p.L219L 0.37 TCGA-2W-A8YY-01 8 124724957 124724957 G A ANXA13 Nonsense_Mutation p.R59* 0.45 TCGA-2W-A8YY-01 8 124780972 124780972 G A FAM91A1 Silent p.R10R 0.28 TCGA-2W-A8YY-01 8 124787458 124787458 C A FAM91A1 Missense_Mutation p.L77M 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 124799551 124799551 C T FAM91A1 Missense_Mutation p.R377C 0.29 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 8 125078753 125078753 T C FER1L6 Missense_Mutation p.W1214R 0.47 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 125464055 125464055 A C TRMT12 Missense_Mutation p.K296T 0.33 tolerated(0.06) benign(0.013) TCGA-2W-A8YY-01 8 125464090 125464090 C T TRMT12 Silent p.L308L 0.44 TCGA-2W-A8YY-01 8 125465092 125465092 C T TRMT12 3'UTR 0.40 TCGA-2W-A8YY-01 8 125499572 125499572 C T RNF139 Missense_Mutation p.T561I 0.30 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 125711807 125711807 G A MTSS1 Silent p.D56D 0.38 TCGA-2W-A8YY-01 8 12592809 12592809 C A LONRF1 Nonsense_Mutation p.E518* 0.10 TCGA-2W-A8YY-01 8 126052099 126052099 T A KIAA0196 Missense_Mutation p.E964D 0.24 deleterious(0.02) probably_damaging(0.944) TCGA-2W-A8YY-01 8 126059465 126059465 G A KIAA0196 Missense_Mutation p.R830W 0.34 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 8 126061390 126061390 G A KIAA0196 Missense_Mutation p.A746V 0.36 tolerated(0.25) benign(0.387) TCGA-2W-A8YY-01 8 12870233 12870233 A G KIAA1456 Silent p.V65V 0.36 TCGA-2W-A8YY-01 8 12879738 12879738 G T KIAA1456 3'UTR 0.33 TCGA-2W-A8YY-01 8 12879922 12879922 G A KIAA1456 3'UTR 0.33 TCGA-2W-A8YY-01 8 12880264 12880264 G T KIAA1456 3'UTR 0.33 TCGA-2W-A8YY-01 8 12881900 12881900 A G KIAA1456 3'UTR 0.31 TCGA-2W-A8YY-01 8 12882454 12882454 C T KIAA1456 3'UTR 0.31 TCGA-2W-A8YY-01 8 12943846 12943846 A G DLC1 Silent p.C1473C 0.24 TCGA-2W-A8YY-01 8 12957110 12957110 G A DLC1 Silent p.H912H 0.37 TCGA-2W-A8YY-01 8 130778003 130778003 C T GSDMC Silent p.E147E 0.64 TCGA-2W-A8YY-01 8 131064483 131064483 G A ASAP1 3'UTR 0.41 TCGA-2W-A8YY-01 8 131064895 131064895 G A ASAP1 3'UTR 0.64 TCGA-2W-A8YY-01 8 131104232 131104232 G A ASAP1 Silent p.G853G 0.14 TCGA-2W-A8YY-01 8 131124547 131124547 G A ASAP1 Missense_Mutation p.R732C 0.33 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 8 131140193 131140193 C T ASAP1 Missense_Mutation p.C454Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 131179813 131179813 A G ASAP1 Missense_Mutation p.I293T 0.36 deleterious(0) possibly_damaging(0.84) TCGA-2W-A8YY-01 8 131792606 131792606 A G ADCY8 3'UTR 0.29 TCGA-2W-A8YY-01 8 131826326 131826326 G A ADCY8 Nonsense_Mutation p.R968* 0.44 TCGA-2W-A8YY-01 8 131848692 131848692 A C ADCY8 Missense_Mutation p.F836V 0.36 tolerated(0.06) possibly_damaging(0.787) TCGA-2W-A8YY-01 8 133067235 133067235 G A OC90 Silent p.P13P 0.55 TCGA-2W-A8YY-01 8 133142182 133142182 C T KCNQ3 Missense_Mutation p.R649Q 0.37 tolerated(0.34) benign(0.005) TCGA-2W-A8YY-01 8 133196495 133196495 G A KCNQ3 Silent p.C199C 0.36 TCGA-2W-A8YY-01 8 13357004 13357004 G A DLC1 Missense_Mutation p.L193F 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.671) TCGA-2W-A8YY-01 8 133806667 133806667 G A PHF20L1 Missense_Mutation p.R32Q 0.41 deleterious(0.04) probably_damaging(0.997) TCGA-2W-A8YY-01 8 133823480 133823480 G T PHF20L1 Intron 0.45 TCGA-2W-A8YY-01 8 133844582 133844582 C T PHF20L1 Missense_Mutation p.T616M 0.27 tolerated(0.15) benign(0.066) TCGA-2W-A8YY-01 8 133858121 133858121 A G PHF20L1 Missense_Mutation p.I1003V 0.37 tolerated(0.14) benign(0.001) TCGA-2W-A8YY-01 8 133858228 133858228 C T PHF20L1 3'UTR 0.34 TCGA-2W-A8YY-01 8 133858428 133858428 T C PHF20L1 3'UTR 0.45 TCGA-2W-A8YY-01 8 133859387 133859387 T C PHF20L1 3'UTR 0.54 TCGA-2W-A8YY-01 8 133859890 133859890 T C PHF20L1 3'UTR 0.39 TCGA-2W-A8YY-01 8 133860841 133860841 C A PHF20L1 3'UTR 0.31 TCGA-2W-A8YY-01 8 133899161 133899161 A G TG Missense_Mutation p.Q515R 0.39 tolerated(0.68) benign(0.016) TCGA-2W-A8YY-01 8 133899294 133899294 A G TG Silent p.Q559Q 0.33 TCGA-2W-A8YY-01 8 133900539 133900539 G T TG Missense_Mutation p.Q829H 0.33 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 8 133906083 133906083 C T TG Silent p.L970L 0.36 TCGA-2W-A8YY-01 8 134072413 134072413 T - SLA Frame_Shift_Del p.K38Rfs*8 0.21 TCGA-2W-A8YY-01 8 135614835 135614835 G A ZFAT Missense_Mutation p.A376V 0.21 tolerated(0.39) benign(0.002) TCGA-2W-A8YY-01 8 139160771 139160771 C T FAM135B Missense_Mutation p.G1147D 0.23 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 139263215 139263215 C T FAM135B Silent p.T137T 0.37 TCGA-2W-A8YY-01 8 139606334 139606334 G A COL22A1 Missense_Mutation p.A1514V 0.52 unknown(0) TCGA-2W-A8YY-01 8 139611131 139611131 C T COL22A1 Missense_Mutation p.G1399E 0.34 unknown(0) TCGA-2W-A8YY-01 8 13965730 13965730 C T SGCZ Missense_Mutation p.V188I 0.43 tolerated(0.27) benign(0.04) TCGA-2W-A8YY-01 8 139890010 139890010 C T COL22A1 Missense_Mutation p.R214Q 0.43 unknown(0) TCGA-2W-A8YY-01 8 139890163 139890163 G A COL22A1 Missense_Mutation p.A163V 0.44 unknown(0) TCGA-2W-A8YY-01 8 140743314 140743314 G A TRAPPC9 Missense_Mutation p.A1244V 0.29 tolerated_low_confidence(0.07) benign(0.001) TCGA-2W-A8YY-01 8 140898201 140898201 G A TRAPPC9 Missense_Mutation p.R1091C 0.24 tolerated(0.1) benign(0.002) TCGA-2W-A8YY-01 8 14095181 14095181 G A SGCZ Missense_Mutation p.P115L 0.32 tolerated(0.21) benign(0.024) TCGA-2W-A8YY-01 8 141461132 141461132 C T TRAPPC9 Missense_Mutation p.R212Q 0.49 deleterious(0.04) probably_damaging(0.949) TCGA-2W-A8YY-01 8 141541386 141541386 G T AGO2 3'UTR 0.29 TCGA-2W-A8YY-01 8 141541389 141541389 C T AGO2 3'UTR 0.45 TCGA-2W-A8YY-01 8 141541638 141541638 G A AGO2 3'UTR 0.27 TCGA-2W-A8YY-01 8 141541882 141541882 G A AGO2 3'UTR 0.41 TCGA-2W-A8YY-01 8 141572611 141572611 G A AGO2 Silent p.S153S 0.35 TCGA-2W-A8YY-01 8 141889676 141889676 G A PTK2 Missense_Mutation p.R86C 0.30 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 8 142161744 142161744 G A DENND3 Silent p.Q214Q 0.42 TCGA-2W-A8YY-01 8 142170856 142170856 C T DENND3 Missense_Mutation p.T361I 0.38 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 8 142176375 142176375 G T DENND3 Missense_Mutation p.R467M 0.38 tolerated(0.11) probably_damaging(0.95) TCGA-2W-A8YY-01 8 142222389 142222389 G A SLC45A4 Silent p.G685G 0.12 TCGA-2W-A8YY-01 8 142229022 142229022 G A SLC45A4 Silent p.A188A 0.40 TCGA-2W-A8YY-01 8 142231829 142231829 G A SLC45A4 Silent p.L42L 0.59 TCGA-2W-A8YY-01 8 142366997 142366997 C T GPR20 Missense_Mutation p.A343T 0.35 tolerated_low_confidence(0.49) benign(0.001) TCGA-2W-A8YY-01 8 142459701 142459701 G A SNORD5 3'Flank 0.09 TCGA-2W-A8YY-01 8 142487515 142487515 G A MROH5 3'UTR 0.35 TCGA-2W-A8YY-01 8 143558040 143558040 C T BAI1 Silent p.F347F 0.43 TCGA-2W-A8YY-01 8 143566067 143566067 C T BAI1 Silent p.D750D 0.34 TCGA-2W-A8YY-01 8 143692529 143692529 C T ARC 3'UTR 0.46 TCGA-2W-A8YY-01 8 143746110 143746110 C T JRK RNA 0.19 TCGA-2W-A8YY-01 8 143833866 143833866 G A LYPD2 Missense_Mutation p.R2W 0.44 tolerated(0.12) benign(0) TCGA-2W-A8YY-01 8 143856614 143856614 G T LYNX1 Intron 0.38 TCGA-2W-A8YY-01 8 143866822 143866822 T C LY6D Missense_Mutation p.T68A 0.29 tolerated(0.12) benign(0.218) TCGA-2W-A8YY-01 8 143928046 143928046 G - GML Frame_Shift_Del p.V141Yfs*6 0.22 TCGA-2W-A8YY-01 8 143957779 143957779 G T CYP11B1 Missense_Mutation p.L278M 0.38 tolerated(0.14) possibly_damaging(0.457) TCGA-2W-A8YY-01 8 143960554 143960554 C T CYP11B1 Missense_Mutation p.V97M 0.42 tolerated(0.06) benign(0.298) TCGA-2W-A8YY-01 8 143998617 143998617 C A CYP11B2 Nonsense_Mutation p.G85* 0.54 TCGA-2W-A8YY-01 8 144239752 144239752 G A LY6H Missense_Mutation p.A134V 0.30 tolerated(0.45) benign(0.02) TCGA-2W-A8YY-01 8 144332240 144332240 C T ZFP41 Missense_Mutation p.P76L 0.41 deleterious(0) possibly_damaging(0.637) TCGA-2W-A8YY-01 8 144378226 144378226 C T ZNF696 Silent p.C127C 0.19 TCGA-2W-A8YY-01 8 144411622 144411622 G A TOP1MT Silent p.S86S 0.40 TCGA-2W-A8YY-01 8 144462049 144462049 C T RHPN1 Silent p.V332V 0.08 TCGA-2W-A8YY-01 8 144463511 144463511 G A RHPN1 Silent p.R495R 0.41 TCGA-2W-A8YY-01 8 144653867 144653867 G A MROH6 Missense_Mutation p.A191V 0.36 deleterious(0.05) possibly_damaging(0.726) TCGA-2W-A8YY-01 8 144662742 144662742 G A EEF1D Silent p.Y548Y 0.42 TCGA-2W-A8YY-01 8 144671370 144671370 G A EEF1D Silent p.A294A 0.41 TCGA-2W-A8YY-01 8 144672179 144672179 G A EEF1D Missense_Mutation p.R25W 0.22 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 144732154 144732154 C T ZNF623 Missense_Mutation p.L38F 0.35 tolerated(0.09) probably_damaging(0.969) TCGA-2W-A8YY-01 8 144733107 144733107 C T ZNF623 Silent p.R355R 0.25 TCGA-2W-A8YY-01 8 144807952 144807952 G A FAM83H 3'UTR 0.42 TCGA-2W-A8YY-01 8 144808991 144808991 C T FAM83H Silent p.G880G 0.30 TCGA-2W-A8YY-01 8 144809042 144809042 G A FAM83H Silent p.L863L 0.47 TCGA-2W-A8YY-01 8 144812364 144812364 G A FAM83H Missense_Mutation p.P130L 0.33 deleterious(0.01) probably_damaging(0.969) TCGA-2W-A8YY-01 8 144873242 144873242 A C SCRIB 3'UTR 0.30 TCGA-2W-A8YY-01 8 144886953 144886953 C T SCRIB Missense_Mutation p.V932I 0.44 probably_damaging(0.924) TCGA-2W-A8YY-01 8 144892731 144892731 A G SCRIB Missense_Mutation p.V483A 0.38 benign(0.05) TCGA-2W-A8YY-01 8 144898727 144898727 T C PUF60 Missense_Mutation p.D548G 0.11 deleterious(0) benign(0.006) TCGA-2W-A8YY-01 8 144919241 144919241 C T NRBP2 Silent p.T411T 0.38 TCGA-2W-A8YY-01 8 144919606 144919606 C T NRBP2 Missense_Mutation p.R350Q 0.38 tolerated(0.19) benign(0.012) TCGA-2W-A8YY-01 8 144921102 144921102 C T NRBP2 Missense_Mutation p.D233N 0.38 tolerated(0.34) probably_damaging(0.996) TCGA-2W-A8YY-01 8 144940674 144940674 A G EPPK1 Missense_Mutation p.W2250R 0.09 benign(0.075) TCGA-2W-A8YY-01 8 144943451 144943451 G A EPPK1 Missense_Mutation p.A1324V 0.47 benign(0) TCGA-2W-A8YY-01 8 144945645 144945645 C T EPPK1 Missense_Mutation p.A593T 0.47 probably_damaging(0.965) TCGA-2W-A8YY-01 8 144989433 144989433 G A PLEC 3'UTR 0.54 TCGA-2W-A8YY-01 8 144990289 144990289 C T PLEC 3'UTR 0.50 TCGA-2W-A8YY-01 8 144990325 144990325 C T PLEC 3'UTR 0.43 TCGA-2W-A8YY-01 8 144991361 144991361 C T PLEC Missense_Mutation p.A4347T 0.37 benign(0.079) TCGA-2W-A8YY-01 8 144995597 144995597 C T PLEC Missense_Mutation p.V2935I 0.10 benign(0.053) TCGA-2W-A8YY-01 8 144996440 144996440 C T PLEC Missense_Mutation p.E2654K 0.59 probably_damaging(0.993) TCGA-2W-A8YY-01 8 145001749 145001749 G A PLEC Silent p.T1332T 0.29 TCGA-2W-A8YY-01 8 145007417 145007417 C T PLEC Missense_Mutation p.V593M 0.36 unknown(0) TCGA-2W-A8YY-01 8 145024774 145024774 C A PLEC Missense_Mutation p.R34L 0.07 unknown(0) TCGA-2W-A8YY-01 8 145051819 145051819 C T PARP10 Missense_Mutation p.V971M 0.33 tolerated(0.25) possibly_damaging(0.734) TCGA-2W-A8YY-01 8 145057718 145057718 C T PARP10 Missense_Mutation p.R680Q 0.45 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 8 145059663 145059663 C T PARP10 Missense_Mutation p.R197H 0.31 deleterious(0) benign(0.171) TCGA-2W-A8YY-01 8 145065408 145065409 - T GRINA Frame_Shift_Ins p.L8Ffs*119 0.24 TCGA-2W-A8YY-01 8 145066979 145066979 C T GRINA Silent p.I362I 0.29 TCGA-2W-A8YY-01 8 145095548 145095548 G T SPATC1 Missense_Mutation p.Q282H 0.38 deleterious(0.05) benign(0.016) TCGA-2W-A8YY-01 8 145113438 145113438 G A OPLAH Silent p.Y248Y 0.45 TCGA-2W-A8YY-01 8 145114848 145114848 C T OPLAH Missense_Mutation p.V30M 0.39 tolerated(0.24) possibly_damaging(0.75) TCGA-2W-A8YY-01 8 145138692 145138692 G A GPAA1 Missense_Mutation p.V148M 0.30 deleterious(0.01) possibly_damaging(0.876) TCGA-2W-A8YY-01 8 145278115 145278115 G A MROH1 Silent p.A440A 0.41 TCGA-2W-A8YY-01 8 145537647 145537647 G T HSF1 Splice_Site p.X439_splice 0.35 TCGA-2W-A8YY-01 8 145618759 145618759 C T CPSF1 Missense_Mutation p.V1398M 0.43 tolerated(0.1) benign(0.156) TCGA-2W-A8YY-01 8 145621671 145621671 G A CPSF1 Silent p.G957G 0.11 TCGA-2W-A8YY-01 8 145622479 145622479 G A CPSF1 Silent p.L845L 0.25 TCGA-2W-A8YY-01 8 145624248 145624248 C T CPSF1 Missense_Mutation p.R520Q 0.41 deleterious(0.04) probably_damaging(0.994) TCGA-2W-A8YY-01 8 145626102 145626102 G - CPSF1 Frame_Shift_Del p.L217Sfs*29 0.25 TCGA-2W-A8YY-01 8 145650202 145650202 G A VPS28 Silent p.L101L 0.41 TCGA-2W-A8YY-01 8 145659604 145659604 G A TONSL Silent p.S1048S 0.12 TCGA-2W-A8YY-01 8 145689612 145689612 C T CYHR1 Intron 0.34 TCGA-2W-A8YY-01 8 145700192 145700192 G T FOXH1 Missense_Mutation p.S176Y 0.27 tolerated(0.06) benign(0.322) TCGA-2W-A8YY-01 8 145700435 145700435 G A FOXH1 Missense_Mutation p.P95L 0.54 tolerated(0.37) probably_damaging(1) TCGA-2W-A8YY-01 8 145730035 145730035 G A GPT Missense_Mutation p.A71T 0.42 tolerated(0.06) probably_damaging(0.965) TCGA-2W-A8YY-01 8 145737115 145737115 G A RECQL4 Missense_Mutation p.P1151S 0.42 tolerated(0.4) benign(0.03) TCGA-2W-A8YY-01 8 145737143 145737143 G A RECQL4 Silent p.C1141C 0.41 TCGA-2W-A8YY-01 8 145738061 145738061 G A RECQL4 Missense_Mutation p.P950L 0.53 tolerated(0.39) benign(0.029) TCGA-2W-A8YY-01 8 145738519 145738519 G A RECQL4 Silent p.G822G 0.48 TCGA-2W-A8YY-01 8 145738790 145738790 C A RECQL4 Missense_Mutation p.A759S 0.31 tolerated(0.37) benign(0.439) TCGA-2W-A8YY-01 8 145748827 145748827 G T LRRC14 3'UTR 0.37 TCGA-2W-A8YY-01 8 145772774 145772774 C T ARHGAP39 Missense_Mutation p.A566T 0.32 tolerated(0.2) benign(0.272) TCGA-2W-A8YY-01 8 145773104 145773104 G T ARHGAP39 Missense_Mutation p.L456M 0.29 tolerated(0.22) benign(0.402) TCGA-2W-A8YY-01 8 145773653 145773653 A T ARHGAP39 Missense_Mutation p.S273T 0.15 deleterious(0.02) possibly_damaging(0.888) TCGA-2W-A8YY-01 8 145947379 145947379 G A ZNF251 Missense_Mutation p.R556C 0.44 deleterious(0.02) benign(0) TCGA-2W-A8YY-01 8 145998904 145998904 C T ZNF34 Missense_Mutation p.C477Y 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 146033203 146033203 G T ZNF517 Missense_Mutation p.R301M 0.27 tolerated(0.09) benign(0.35) TCGA-2W-A8YY-01 8 146036024 146036024 C A ZNF517 3'Flank 0.54 TCGA-2W-A8YY-01 8 146036073 146036073 T C ZNF517 3'Flank 0.19 TCGA-2W-A8YY-01 8 146076431 146076431 C T COMMD5 Missense_Mutation p.R98H 0.40 tolerated(0.06) benign(0.199) TCGA-2W-A8YY-01 8 146076584 146076584 G A COMMD5 Missense_Mutation p.T47M 0.34 tolerated(0.16) benign(0.117) TCGA-2W-A8YY-01 8 146277981 146277981 C T C8orf33 Missense_Mutation p.H6Y 0.43 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 8 1496795 1496795 C T DLGAP2 5'UTR 0.21 TCGA-2W-A8YY-01 8 16007749 16007749 C T MSR1 Missense_Mutation p.G324R 0.41 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 8 16026001 16026001 C T MSR1 Missense_Mutation p.G199D 0.44 tolerated(0.5) benign(0.003) TCGA-2W-A8YY-01 8 16035492 16035492 C T MSR1 Silent p.E2E 0.52 TCGA-2W-A8YY-01 8 1616683 1616683 C A DLGAP2 Missense_Mutation p.L587M 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-2W-A8YY-01 8 1626470 1626470 G T DLGAP2 Missense_Mutation p.E713D 0.15 tolerated(0.1) probably_damaging(0.992) TCGA-2W-A8YY-01 8 163592 163592 G A RPL23AP53 RNA 0.42 TCGA-2W-A8YY-01 8 1645323 1645323 C T DLGAP2 Missense_Mutation p.A856V 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 16944533 16944533 C T MICU3 Missense_Mutation p.R280C 0.26 deleterious(0.03) benign(0.001) TCGA-2W-A8YY-01 8 17067515 17067515 C T ZDHHC2 Nonsense_Mutation p.R269* 0.34 TCGA-2W-A8YY-01 8 17156267 17156267 A C MTMR7 3'UTR 0.45 TCGA-2W-A8YY-01 8 17188691 17188691 A G MTMR7 Missense_Mutation p.V278A 0.38 deleterious(0) probably_damaging(0.974) TCGA-2W-A8YY-01 8 17218687 17218687 T C MTMR7 Missense_Mutation p.Y136C 0.36 deleterious(0) probably_damaging(0.945) TCGA-2W-A8YY-01 8 17415807 17415807 T C SLC7A2 Missense_Mutation p.L440S 0.38 deleterious(0.02) benign(0.361) TCGA-2W-A8YY-01 8 17838222 17838223 - A PCM1 Frame_Shift_Ins p.I1358Nfs*5 0.27 TCGA-2W-A8YY-01 8 17915080 17915080 T C ASAH1 Missense_Mutation p.Y400C 0.39 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 8 18074439 18074439 G A NAT1 Missense_Mutation p.E13K 0.41 possibly_damaging(0.502) TCGA-2W-A8YY-01 8 18393346 18393346 A G PSD3 Silent p.D1017D 0.37 TCGA-2W-A8YY-01 8 1871978 1871978 C T ARHGEF10 Missense_Mutation p.T809M 0.23 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 19214769 19214769 G A SH2D4A Missense_Mutation p.R190H 0.41 tolerated(0.25) benign(0.005) TCGA-2W-A8YY-01 8 19250898 19250898 G A SH2D4A Missense_Mutation p.R373Q 0.45 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 8 19363341 19363341 A G CSGALNACT1 Missense_Mutation p.M2T 0.46 tolerated_low_confidence(0.18) benign(0.001) TCGA-2W-A8YY-01 8 193745 193745 G A ZNF596 Missense_Mutation p.V55M 0.18 deleterious(0.04) possibly_damaging(0.819) TCGA-2W-A8YY-01 8 1951181 1951181 C A KBTBD11 Missense_Mutation p.A608D 0.26 deleterious(0) benign(0.122) TCGA-2W-A8YY-01 8 1951577 1951577 G A KBTBD11 3'UTR 0.48 TCGA-2W-A8YY-01 8 1955017 1955017 T C KBTBD11 3'UTR 0.45 TCGA-2W-A8YY-01 8 19690775 19690775 G A INTS10 Silent p.E491E 0.39 TCGA-2W-A8YY-01 8 19805714 19805714 G A LPL Missense_Mutation p.E38K 0.35 tolerated(0.31) benign(0.274) TCGA-2W-A8YY-01 8 19809322 19809322 G A LPL Missense_Mutation p.A98T 0.33 deleterious(0.02) probably_damaging(1) TCGA-2W-A8YY-01 8 19823117 19823117 C T LPL 3'UTR 0.45 TCGA-2W-A8YY-01 8 20066945 20066945 T G ATP6V1B2 Missense_Mutation p.F65C 0.44 tolerated(0.17) possibly_damaging(0.895) TCGA-2W-A8YY-01 8 20070347 20070347 G A ATP6V1B2 Silent p.A286A 0.25 TCGA-2W-A8YY-01 8 20075698 20075698 C T ATP6V1B2 Missense_Mutation p.A434V 0.33 deleterious(0.01) possibly_damaging(0.9) TCGA-2W-A8YY-01 8 20075712 20075712 G A ATP6V1B2 Missense_Mutation p.V439I 0.35 tolerated(0.09) benign(0.025) TCGA-2W-A8YY-01 8 2033475 2033475 C T MYOM2 Missense_Mutation p.P533S 0.45 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 8 2041808 2041808 A G MYOM2 Missense_Mutation p.H672R 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 2092591 2092591 T C MYOM2 Silent p.L1362L 0.13 TCGA-2W-A8YY-01 8 2092880 2092880 C T MYOM2 Missense_Mutation p.A1458V 0.21 deleterious_low_confidence(0.02) benign(0.243) TCGA-2W-A8YY-01 8 21608301 21608301 C T GFRA2 Missense_Mutation p.R198H 0.17 deleterious(0) benign(0.115) TCGA-2W-A8YY-01 8 21767115 21767115 C T DOK2 Missense_Mutation p.G316S 0.10 tolerated(0.31) benign(0.009) TCGA-2W-A8YY-01 8 21771125 21771125 T C DOK2 5'UTR 0.36 TCGA-2W-A8YY-01 8 21939384 21939384 G A DMTN 3'UTR 0.42 TCGA-2W-A8YY-01 8 21959774 21959774 C T FAM160B2 Missense_Mutation p.P647L 0.45 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 8 21961400 21961400 G A FAM160B2 3'UTR 0.54 TCGA-2W-A8YY-01 8 21961789 21961789 G A FAM160B2 3'UTR 0.48 TCGA-2W-A8YY-01 8 21982825 21982825 T G HR Missense_Mutation p.E583D 0.13 tolerated(0.43) possibly_damaging(0.748) TCGA-2W-A8YY-01 8 21996184 21996184 G A REEP4 Missense_Mutation p.R226C 0.49 deleterious(0) possibly_damaging(0.901) TCGA-2W-A8YY-01 8 21998194 21998194 G T REEP4 Missense_Mutation p.L17M 0.19 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 8 22005907 22005907 C T LGI3 Silent p.Q471Q 0.32 TCGA-2W-A8YY-01 8 22011705 22011705 G T LGI3 Silent p.I124I 0.48 TCGA-2W-A8YY-01 8 22021426 22021426 G A SFTPC Missense_Mutation p.V156M 0.26 tolerated(0.44) benign(0.002) TCGA-2W-A8YY-01 8 22033762 22033762 G A BMP1 Silent p.T123T 0.39 TCGA-2W-A8YY-01 8 22052316 22052316 G A BMP1 Missense_Mutation p.R508H 0.29 tolerated(0.34) benign(0.098) TCGA-2W-A8YY-01 8 22053758 22053758 G T BMP1 Intron 0.18 TCGA-2W-A8YY-01 8 22069323 22069323 C T BMP1 3'UTR 0.44 TCGA-2W-A8YY-01 8 22078878 22078878 G A PHYHIP Silent p.S327S 0.30 TCGA-2W-A8YY-01 8 22108246 22108246 G A POLR3D 3'UTR 0.23 TCGA-2W-A8YY-01 8 22108480 22108480 G A POLR3D 3'UTR 0.31 TCGA-2W-A8YY-01 8 22269560 22269560 C T SLC39A14 Intron 0.55 TCGA-2W-A8YY-01 8 22439027 22439027 C T PDLIM2 Missense_Mutation p.R327W 0.48 deleterious(0.02) probably_damaging(0.997) TCGA-2W-A8YY-01 8 22442370 22442370 C G PDLIM2 Missense_Mutation p.D344E 0.41 tolerated(0.5) benign(0.01) TCGA-2W-A8YY-01 8 22460049 22460049 G T C8orf58 Splice_Site p.X294_splice 0.28 TCGA-2W-A8YY-01 8 22472389 22472389 T C CCAR2 Silent p.V360V 0.39 TCGA-2W-A8YY-01 8 22473348 22473348 G A CCAR2 Missense_Mutation p.A511T 0.30 deleterious(0.02) benign(0.434) TCGA-2W-A8YY-01 8 22477262 22477262 G A CCAR2 3'UTR 0.39 TCGA-2W-A8YY-01 8 22494082 22494082 C T BIN3 Missense_Mutation p.R39Q 0.50 deleterious(0.01) possibly_damaging(0.624) TCGA-2W-A8YY-01 8 22545953 22545953 G A EGR3 3'UTR 0.52 TCGA-2W-A8YY-01 8 22547048 22547048 G A EGR3 3'UTR 0.36 TCGA-2W-A8YY-01 8 22547432 22547432 G A EGR3 3'UTR 0.33 TCGA-2W-A8YY-01 8 22675245 22675245 C T PEBP4 Missense_Mutation p.A88T 0.31 tolerated(0.2) benign(0.086) TCGA-2W-A8YY-01 8 22873162 22873162 G A RHOBTB2 Silent p.A646A 0.36 TCGA-2W-A8YY-01 8 22884756 22884756 C T TNFRSF10B Missense_Mutation p.V276M 0.35 tolerated(0.26) benign(0.033) TCGA-2W-A8YY-01 8 22900714 22900714 G A TNFRSF10B Missense_Mutation p.P63S 0.43 tolerated(0.29) benign(0.036) TCGA-2W-A8YY-01 8 22995760 22995760 G T TNFRSF10D Missense_Mutation p.A323D 0.32 tolerated(0.37) probably_damaging(0.925) TCGA-2W-A8YY-01 8 23060176 23060176 T C TNFRSF10A Missense_Mutation p.T168A 0.48 deleterious(0.04) benign(0.275) TCGA-2W-A8YY-01 8 23115887 23115887 C T CHMP7 Silent p.I295I 0.41 TCGA-2W-A8YY-01 8 23117744 23117744 G A CHMP7 Missense_Mutation p.R403H 0.49 tolerated(0.28) benign(0) TCGA-2W-A8YY-01 8 23147390 23147390 C T R3HCC1 5'UTR 0.12 TCGA-2W-A8YY-01 8 23148976 23148976 G A R3HCC1 Missense_Mutation p.V132M 0.30 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 8 23155562 23155562 C T LOXL2 Silent p.P773P 0.17 TCGA-2W-A8YY-01 8 23156382 23156382 C T LOXL2 Missense_Mutation p.G738S 0.56 deleterious(0.01) probably_damaging(0.989) TCGA-2W-A8YY-01 8 23191003 23191003 T G LOXL2 Missense_Mutation p.N293H 0.33 tolerated(0.32) benign(0.008) TCGA-2W-A8YY-01 8 23290452 23290452 G A ENTPD4 Missense_Mutation p.P613L 0.47 deleterious_low_confidence(0.01) benign(0.01) TCGA-2W-A8YY-01 8 23423723 23423723 C T SLC25A37 Nonsense_Mutation p.R105* 0.37 TCGA-2W-A8YY-01 8 23560137 23560137 C T NKX2-6 Missense_Mutation p.G245R 0.37 tolerated(0.22) benign(0.045) TCGA-2W-A8YY-01 8 23700810 23700810 C A STC1 3'UTR 0.33 TCGA-2W-A8YY-01 8 23700845 23700845 G A STC1 3'UTR 0.38 TCGA-2W-A8YY-01 8 23701839 23701839 C T STC1 3'UTR 0.50 TCGA-2W-A8YY-01 8 24339724 24339724 G T ADAM7 Nonsense_Mutation p.E259* 0.47 TCGA-2W-A8YY-01 8 24771831 24771831 G A NEFM Silent p.S175S 0.32 TCGA-2W-A8YY-01 8 24771868 24771868 C T NEFM Missense_Mutation p.R188C 0.25 deleterious(0) unknown(0) TCGA-2W-A8YY-01 8 24813129 24813129 C T CTD-2168K21.2 5'Flank 0.25 TCGA-2W-A8YY-01 8 24814129 24814129 C T CTD-2168K21.2 5'Flank 0.38 TCGA-2W-A8YY-01 8 25276851 25276851 G A GNRH1 3'UTR 0.46 TCGA-2W-A8YY-01 8 25290898 25290898 G T KCTD9 Silent p.S289S 0.06 TCGA-2W-A8YY-01 8 25319605 25319605 C T CDCA2 Missense_Mutation p.R90C 0.31 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 8 25902368 25902368 C T EBF2 Missense_Mutation p.G3E 0.31 deleterious_low_confidence(0.04) benign(0.009) TCGA-2W-A8YY-01 8 26239096 26239096 G A BNIP3L 5'Flank 0.42 TCGA-2W-A8YY-01 8 26270569 26270569 G A BNIP3L 3'UTR 0.45 TCGA-2W-A8YY-01 8 26362418 26362418 A C PNMA2 3'UTR 0.27 TCGA-2W-A8YY-01 8 26366267 26366267 G A PNMA2 Missense_Mutation p.A2V 0.41 tolerated(0.07) possibly_damaging(0.716) TCGA-2W-A8YY-01 8 26435770 26435770 G A DPYSL2 5'UTR 0.08 TCGA-2W-A8YY-01 8 26492409 26492409 G A DPYSL2 Silent p.R268R 0.31 TCGA-2W-A8YY-01 8 26505299 26505299 G A DPYSL2 Missense_Mutation p.A422T 0.24 deleterious(0.01) possibly_damaging(0.469) TCGA-2W-A8YY-01 8 26509798 26509798 G A DPYSL2 Missense_Mutation p.G436D 0.57 deleterious(0.02) probably_damaging(0.993) TCGA-2W-A8YY-01 8 26514780 26514780 G A DPYSL2 3'UTR 0.14 TCGA-2W-A8YY-01 8 27291070 27291070 G A PTK2B Splice_Site p.X369_splice 0.27 TCGA-2W-A8YY-01 8 27321086 27321086 C T CHRNA2 Missense_Mutation p.D292N 0.42 tolerated(0.1) probably_damaging(0.961) TCGA-2W-A8YY-01 8 27362584 27362584 C T EPHX2 Missense_Mutation p.S153L 0.11 deleterious(0.01) probably_damaging(0.982) TCGA-2W-A8YY-01 8 27456129 27456129 C T CLU Silent p.S396S 0.38 TCGA-2W-A8YY-01 8 27462760 27462760 C T CLU Silent p.T170T 0.31 TCGA-2W-A8YY-01 8 27507295 27507295 G A SCARA3 Silent p.P28P 0.41 TCGA-2W-A8YY-01 8 27516712 27516712 G T SCARA3 Missense_Mutation p.R342M 0.34 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 8 27641556 27641556 C T ESCO2 Missense_Mutation p.S332F 0.30 deleterious(0.04) possibly_damaging(0.897) TCGA-2W-A8YY-01 8 27925054 27925054 C T NUGGC Missense_Mutation p.V230I 0.34 tolerated(1) benign(0.004) TCGA-2W-A8YY-01 8 27927845 27927845 C T NUGGC Silent p.T24T 0.30 TCGA-2W-A8YY-01 8 2806886 2806886 C T CSMD1 Missense_Mutation p.G3446E 0.45 benign(0.014) TCGA-2W-A8YY-01 8 2808762 2808762 T C CSMD1 Missense_Mutation p.K3359E 0.43 benign(0.295) TCGA-2W-A8YY-01 8 2815237 2815237 C T CSMD1 Silent p.G3265G 0.49 TCGA-2W-A8YY-01 8 2823345 2823345 G A CSMD1 Missense_Mutation p.R3078C 0.30 possibly_damaging(0.761) TCGA-2W-A8YY-01 8 28384970 28384970 C T FZD3 Silent p.F231F 0.22 TCGA-2W-A8YY-01 8 28574910 28574910 C A EXTL3 Missense_Mutation p.S445Y 0.29 tolerated(0.3) benign(0.148) TCGA-2W-A8YY-01 8 28924889 28924889 A G KIF13B 3'UTR 0.58 TCGA-2W-A8YY-01 8 28967445 28967445 C T KIF13B Missense_Mutation p.R1358H 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 28981572 28981572 A G KIF13B Silent p.D1107D 0.34 TCGA-2W-A8YY-01 8 28997627 28997627 C A KIF13B Nonsense_Mutation p.E856* 0.31 TCGA-2W-A8YY-01 8 29023230 29023230 T C KIF13B Silent p.E406E 0.22 TCGA-2W-A8YY-01 8 29194328 29194328 G A DUSP4 3'UTR 0.40 TCGA-2W-A8YY-01 8 29194905 29194905 G A DUSP4 Missense_Mutation p.R275C 0.30 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 8 3000078 3000078 G A CSMD1 Silent p.P2050P 0.41 TCGA-2W-A8YY-01 8 30242665 30242665 G T RBPMS Missense_Mutation p.Q19H 0.36 tolerated(0.19) benign(0) TCGA-2W-A8YY-01 8 30423779 30423779 A G RBPMS 3'UTR 0.37 TCGA-2W-A8YY-01 8 30436362 30436362 G A GTF2E2 3'UTR 0.46 TCGA-2W-A8YY-01 8 30539508 30539508 A G GSR Silent p.Y408Y 0.45 TCGA-2W-A8YY-01 8 30609015 30609015 C T UBXN8 RNA 0.12 TCGA-2W-A8YY-01 8 30704187 30704187 G A TEX15 Missense_Mutation p.P783S 0.31 tolerated(0.72) benign(0.032) TCGA-2W-A8YY-01 8 30704743 30704743 G T TEX15 Silent p.A597A 0.29 TCGA-2W-A8YY-01 8 3072198 3072198 G T CSMD1 Missense_Mutation p.A1563D 0.38 probably_damaging(0.944) TCGA-2W-A8YY-01 8 31497393 31497393 G - NRG1 5'UTR 0.30 TCGA-2W-A8YY-01 8 31497578 31497578 G A NRG1 Silent p.S26S 0.45 TCGA-2W-A8YY-01 8 3224583 3224583 G A CSMD1 Missense_Mutation p.S1029L 0.16 probably_damaging(0.999) TCGA-2W-A8YY-01 8 32505272 32505272 C T NRG1 Intron 0.41 TCGA-2W-A8YY-01 8 32505285 32505285 T C NRG1 Intron 0.31 TCGA-2W-A8YY-01 8 33358028 33358028 C A MAK16 3'UTR 0.28 TCGA-2W-A8YY-01 8 33369536 33369536 T G TTI2 Missense_Mutation p.E199A 0.32 deleterious(0.04) benign(0.192) TCGA-2W-A8YY-01 8 33369849 33369849 G A TTI2 Missense_Mutation p.P95S 0.33 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 8 33449388 33449388 A C DUSP26 3'UTR 0.09 TCGA-2W-A8YY-01 8 33451247 33451247 G A DUSP26 Silent p.R80R 0.34 TCGA-2W-A8YY-01 8 33455077 33455077 G A DUSP26 5'UTR 0.44 TCGA-2W-A8YY-01 8 35648733 35648733 T G UNC5D 3'Flank 0.43 TCGA-2W-A8YY-01 8 36793215 36793215 C T KCNU1 Missense_Mutation p.P1076L 0.31 tolerated(0.09) benign(0.003) TCGA-2W-A8YY-01 8 37607089 37607089 A T ERLIN2 Missense_Mutation p.E146V 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-2W-A8YY-01 8 37607926 37607926 A G ERLIN2 Missense_Mutation p.T191A 0.41 deleterious(0.05) probably_damaging(0.989) TCGA-2W-A8YY-01 8 37614085 37614085 A C ERLIN2 3'UTR 0.38 TCGA-2W-A8YY-01 8 37686441 37686441 C T GPR124 Missense_Mutation p.P125L 0.40 deleterious(0) possibly_damaging(0.869) TCGA-2W-A8YY-01 8 37700470 37700470 C T GPR124 3'UTR 0.40 TCGA-2W-A8YY-01 8 37700557 37700557 G T GPR124 3'UTR 0.44 TCGA-2W-A8YY-01 8 37718279 37718279 G T RAB11FIP1 3'UTR 0.09 TCGA-2W-A8YY-01 8 37719983 37719983 C T RAB11FIP1 3'UTR 0.40 TCGA-2W-A8YY-01 8 37720335 37720335 A G RAB11FIP1 3'UTR 0.39 TCGA-2W-A8YY-01 8 37720521 37720521 G A RAB11FIP1 Silent p.V1248V 0.35 TCGA-2W-A8YY-01 8 37720546 37720546 G A RAB11FIP1 Missense_Mutation p.T1240M 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 8 37730141 37730141 G A RAB11FIP1 Missense_Mutation p.P727S 0.29 tolerated_low_confidence(0.31) benign(0.085) TCGA-2W-A8YY-01 8 37796262 37796262 C T GOT1L1 Missense_Mutation p.A85T 0.29 tolerated(0.09) benign(0.03) TCGA-2W-A8YY-01 8 37821387 37821387 G T ADRB3 3'UTR 0.36 TCGA-2W-A8YY-01 8 37823670 37823670 G A ADRB3 Silent p.G106G 0.42 TCGA-2W-A8YY-01 8 38001823 38001823 C T STAR Missense_Mutation p.E276K 0.39 tolerated(0.12) benign(0.004) TCGA-2W-A8YY-01 8 38003556 38003556 C T STAR Missense_Mutation p.R192H 0.22 deleterious(0) benign(0.377) TCGA-2W-A8YY-01 8 38092015 38092015 G A DDHD2 Silent p.S108S 0.39 TCGA-2W-A8YY-01 8 38125967 38125967 G T PPAPDC1B Missense_Mutation p.L66I 0.33 tolerated(0.17) benign(0.027) TCGA-2W-A8YY-01 8 38162872 38162872 A G WHSC1L1 Silent p.C778C 0.22 TCGA-2W-A8YY-01 8 38287379 38287379 T C FGFR1 Missense_Mutation p.D93G 0.32 tolerated(0.54) benign(0.228) TCGA-2W-A8YY-01 8 38678102 38678102 A G TACC1 Missense_Mutation p.H447R 0.41 tolerated(0.38) benign(0.011) TCGA-2W-A8YY-01 8 38693781 38693781 C T TACC1 Silent p.A605A 0.52 TCGA-2W-A8YY-01 8 38707365 38707365 C T TACC1 3'UTR 0.32 TCGA-2W-A8YY-01 8 38835610 38835610 G A HTRA4 Missense_Mutation p.E304K 0.36 deleterious(0) possibly_damaging(0.852) TCGA-2W-A8YY-01 8 38852962 38852962 G A TM2D2 Intron 0.10 TCGA-2W-A8YY-01 8 38884240 38884240 T C ADAM9 Silent p.H347H 0.29 TCGA-2W-A8YY-01 8 38934874 38934874 T C ADAM9 Missense_Mutation p.S609P 0.58 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 8 39604144 39604144 C T ADAM2 Missense_Mutation p.R674H 0.42 tolerated(0.13) benign(0.013) TCGA-2W-A8YY-01 8 39626927 39626927 T G ADAM2 Missense_Mutation p.D399A 0.57 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 8 40011276 40011276 G A C8orf4 Silent p.E75E 0.23 TCGA-2W-A8YY-01 8 40012636 40012637 TC - C8orf4 3'UTR 0.32 TCGA-2W-A8YY-01 8 40012756 40012756 C T C8orf4 3'UTR 0.26 TCGA-2W-A8YY-01 8 408444 408444 G A FBXO25 Missense_Mutation p.G246R 0.41 tolerated(0.07) probably_damaging(0.944) TCGA-2W-A8YY-01 8 41467413 41467413 C T AGPAT6 Missense_Mutation p.R159W 0.29 deleterious(0) probably_damaging(0.985) TCGA-2W-A8YY-01 8 41512948 41512948 G A ANK1 3'UTR 0.55 TCGA-2W-A8YY-01 8 41552217 41552217 C T ANK1 Missense_Mutation p.D1115N 0.52 tolerated(0.81) possibly_damaging(0.871) TCGA-2W-A8YY-01 8 41552266 41552266 G A ANK1 Silent p.T1098T 0.52 TCGA-2W-A8YY-01 8 41554266 41554266 G T ANK1 Missense_Mutation p.S929Y 0.36 deleterious(0.02) probably_damaging(0.968) TCGA-2W-A8YY-01 8 41655132 41655132 G A ANK1 Intron 0.10 TCGA-2W-A8YY-01 8 41754029 41754029 C A ANK1 5'UTR 0.41 TCGA-2W-A8YY-01 8 41790881 41790881 C T KAT6A Missense_Mutation p.M1619I 0.41 unknown(0) TCGA-2W-A8YY-01 8 42036449 42036449 C T PLAT Missense_Mutation p.G499D 0.39 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-2W-A8YY-01 8 42188894 42188894 A G IKBKB 3'UTR 0.52 TCGA-2W-A8YY-01 8 42302264 42302264 G T SLC20A2 Silent p.L210L 0.35 TCGA-2W-A8YY-01 8 42302268 42302268 A G SLC20A2 Missense_Mutation p.V209A 0.31 tolerated(0.51) benign(0.038) TCGA-2W-A8YY-01 8 42401646 42401646 G A SMIM19 Missense_Mutation p.D11N 0.43 tolerated_low_confidence(0.32) benign(0.007) TCGA-2W-A8YY-01 8 42611335 42611335 G A CHRNA6 Missense_Mutation p.T336I 0.43 deleterious(0.02) benign(0.022) TCGA-2W-A8YY-01 8 42612119 42612119 C T CHRNA6 Missense_Mutation p.R109H 0.37 tolerated(0.14) benign(0.055) TCGA-2W-A8YY-01 8 42710684 42710684 A - RNF170 3'UTR 0.34 TCGA-2W-A8YY-01 8 43152483 43152483 G A POTEA RNA 0.32 TCGA-2W-A8YY-01 8 442475 442475 C T TDRP Missense_Mutation p.R161H 0.37 deleterious(0) probably_damaging(0.95) TCGA-2W-A8YY-01 8 48695147 48695147 C T PRKDC Missense_Mutation p.A3729T 0.13 benign(0.008) TCGA-2W-A8YY-01 8 48710907 48710907 A G PRKDC Missense_Mutation p.M3449T 0.35 benign(0.001) TCGA-2W-A8YY-01 8 48711895 48711895 C T PRKDC Silent p.A3390A 0.42 TCGA-2W-A8YY-01 8 48744450 48744450 T C PRKDC Silent p.R2729R 0.46 TCGA-2W-A8YY-01 8 48775011 48775011 C T PRKDC Missense_Mutation p.A1947T 0.35 benign(0.084) TCGA-2W-A8YY-01 8 48801113 48801113 C T PRKDC Missense_Mutation p.R1459K 0.29 benign(0.002) TCGA-2W-A8YY-01 8 48815254 48815254 C A PRKDC Missense_Mutation p.Q1048H 0.50 probably_damaging(0.993) TCGA-2W-A8YY-01 8 48874121 48874121 G A MCM4 Missense_Mutation p.G39D 0.36 tolerated(0.64) benign(0.034) TCGA-2W-A8YY-01 8 48875337 48875337 G A MCM4 Missense_Mutation p.R172H 0.36 tolerated(0.17) benign(0.006) TCGA-2W-A8YY-01 8 48878926 48878926 G A MCM4 Missense_Mutation p.A338T 0.35 tolerated(0.37) benign(0.002) TCGA-2W-A8YY-01 8 48880010 48880010 A G MCM4 Missense_Mutation p.D380G 0.42 deleterious(0) probably_damaging(0.94) TCGA-2W-A8YY-01 8 49831423 49831423 G T SNAI2 Missense_Mutation p.F250L 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 49832607 49832607 G T SNAI2 Missense_Mutation p.S158Y 0.09 tolerated(1) benign(0.037) TCGA-2W-A8YY-01 8 49832707 49832707 C T SNAI2 Missense_Mutation p.A125T 0.22 tolerated(0.11) benign(0.018) TCGA-2W-A8YY-01 8 52232303 52232303 C T PXDNL 3'UTR 0.50 TCGA-2W-A8YY-01 8 52384839 52384839 C T PXDNL Silent p.P240P 0.36 TCGA-2W-A8YY-01 8 52412281 52412281 C T PXDNL Missense_Mutation p.D144N 0.14 tolerated(0.84) benign(0.034) TCGA-2W-A8YY-01 8 52744029 52744029 A G PCMTD1 Silent p.N227N 0.19 TCGA-2W-A8YY-01 8 53023542 53023542 G A ST18 3'UTR 0.27 TCGA-2W-A8YY-01 8 53084876 53084876 G A ST18 Missense_Mutation p.S182F 0.26 deleterious(0) benign(0.238) TCGA-2W-A8YY-01 8 53571485 53571485 C T RB1CC1 Missense_Mutation p.D581N 0.39 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 8 53573502 53573502 G T RB1CC1 Silent p.S537S 0.27 TCGA-2W-A8YY-01 8 53853199 53853199 C T NPBWR1 Silent p.R244R 0.30 TCGA-2W-A8YY-01 8 54141817 54141817 C A OPRK1 3'UTR 0.44 TCGA-2W-A8YY-01 8 54141887 54141887 C T OPRK1 Silent p.R371R 0.24 TCGA-2W-A8YY-01 8 54142114 54142114 C T OPRK1 Missense_Mutation p.V296M 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 54656234 54656234 C T ATP6V1H Missense_Mutation p.G432S 0.38 deleterious(0.01) possibly_damaging(0.804) TCGA-2W-A8YY-01 8 54764608 54764608 C T RGS20 Missense_Mutation p.A50V 0.40 tolerated_low_confidence(0.13) benign(0.012) TCGA-2W-A8YY-01 8 54792067 54792067 G A RGS20 Missense_Mutation p.G139S 0.38 tolerated_low_confidence(0.09) benign(0.009) TCGA-2W-A8YY-01 8 54852224 54852224 C T RGS20 Missense_Mutation p.A200V 0.40 tolerated(0.85) benign(0.002) TCGA-2W-A8YY-01 8 54852244 54852244 G A RGS20 Missense_Mutation p.A207T 0.29 tolerated(0.08) benign(0.06) TCGA-2W-A8YY-01 8 55540343 55540343 G T RP1 Nonsense_Mutation p.E1301* 0.11 TCGA-2W-A8YY-01 8 55542193 55542193 T C RP1 Silent p.H1917H 0.12 TCGA-2W-A8YY-01 8 56270330 56270330 C T XKR4 Missense_Mutation p.A300V 0.12 deleterious(0.03) benign(0.035) TCGA-2W-A8YY-01 8 56436770 56436770 A G XKR4 Missense_Mutation p.Y646C 0.42 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 8 56437626 56437626 A - XKR4 3'UTR 0.26 TCGA-2W-A8YY-01 8 56437691 56437691 C T XKR4 3'UTR 0.39 TCGA-2W-A8YY-01 8 56437838 56437838 G A XKR4 3'UTR 0.37 TCGA-2W-A8YY-01 8 56438636 56438636 G A XKR4 3'UTR 0.23 TCGA-2W-A8YY-01 8 56879388 56879388 T C LYN Missense_Mutation p.L302P 0.30 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 56985535 56985535 A G RPS20 Intron 0.32 TCGA-2W-A8YY-01 8 57025548 57025548 G A MOS Missense_Mutation p.R332W 0.19 deleterious(0) possibly_damaging(0.75) TCGA-2W-A8YY-01 8 57079670 57079670 T C PLAG1 Missense_Mutation p.D212G 0.52 deleterious(0) probably_damaging(0.956) TCGA-2W-A8YY-01 8 57079744 57079744 G A PLAG1 Silent p.C187C 0.37 TCGA-2W-A8YY-01 8 57079778 57079778 G A PLAG1 Missense_Mutation p.S176L 0.10 tolerated(0.11) benign(0.039) TCGA-2W-A8YY-01 8 57080756 57080756 G A PLAG1 Missense_Mutation p.R25C 0.34 deleterious(0.01) probably_damaging(0.973) TCGA-2W-A8YY-01 8 57125442 57125442 G A CHCHD7 Silent p.S11S 0.38 TCGA-2W-A8YY-01 8 57127173 57127173 A C CHCHD7 Missense_Mutation p.M26L 0.43 tolerated(0.06) benign(0.075) TCGA-2W-A8YY-01 8 58192172 58192172 C T LINC00588 RNA 0.42 TCGA-2W-A8YY-01 8 59059512 59059512 C T FAM110B Silent p.A241A 0.54 TCGA-2W-A8YY-01 8 59060200 59060200 G A FAM110B 3'UTR 0.29 TCGA-2W-A8YY-01 8 59719762 59719762 T C TOX 3'UTR 0.43 TCGA-2W-A8YY-01 8 61655367 61655367 G A CHD7 Missense_Mutation p.R459H 0.38 possibly_damaging(0.522) TCGA-2W-A8YY-01 8 61757871 61757871 C T CHD7 Missense_Mutation p.P1705S 0.39 benign(0.106) TCGA-2W-A8YY-01 8 61761127 61761127 A G CHD7 Missense_Mutation p.D1755G 0.33 possibly_damaging(0.76) TCGA-2W-A8YY-01 8 61765241 61765241 C T CHD7 Nonsense_Mutation p.R2027* 0.38 TCGA-2W-A8YY-01 8 61778372 61778372 C T CHD7 Silent p.A2958A 0.29 TCGA-2W-A8YY-01 8 61778836 61778836 G A CHD7 3'UTR 0.33 TCGA-2W-A8YY-01 8 618727 618727 C T ERICH1 Missense_Mutation p.A377T 0.29 deleterious(0.03) possibly_damaging(0.525) TCGA-2W-A8YY-01 8 62412376 62412376 T C CLVS1 3'UTR 0.40 TCGA-2W-A8YY-01 8 62489384 62489384 C A ASPH Nonsense_Mutation p.E366* 0.33 TCGA-2W-A8YY-01 8 62496537 62496537 G A ASPH Missense_Mutation p.A343V 0.35 deleterious(0.03) benign(0.434) TCGA-2W-A8YY-01 8 62531538 62531538 T G ASPH Missense_Mutation p.K325N 0.46 tolerated(0.3) benign(0.374) TCGA-2W-A8YY-01 8 62577895 62577895 C T ASPH Intron 0.38 TCGA-2W-A8YY-01 8 6302941 6302941 C T MCPH1 Silent p.T566T 0.42 TCGA-2W-A8YY-01 8 6338366 6338366 C T MCPH1 Missense_Mutation p.A702V 0.22 deleterious(0.04) benign(0.006) TCGA-2W-A8YY-01 8 6360340 6360340 C T ANGPT2 3'UTR 0.35 TCGA-2W-A8YY-01 8 64100128 64100128 G A YTHDF3 Missense_Mutation p.R519H 0.37 deleterious(0.02) possibly_damaging(0.715) TCGA-2W-A8YY-01 8 64100300 64100300 T C YTHDF3 Silent p.R576R 0.36 TCGA-2W-A8YY-01 8 64122425 64122425 G A YTHDF3 3'UTR 0.27 TCGA-2W-A8YY-01 8 6420451 6420451 C T ANGPT2 Nonsense_Mutation p.W2* 0.15 TCGA-2W-A8YY-01 8 65495284 65495284 C T BHLHE22 3'UTR 0.17 TCGA-2W-A8YY-01 8 65527694 65527694 C T CYP7B1 Missense_Mutation p.A316T 0.43 tolerated(0.14) benign(0.057) TCGA-2W-A8YY-01 8 65528722 65528722 T G CYP7B1 Missense_Mutation p.S126R 0.46 tolerated(0.06) benign(0.015) TCGA-2W-A8YY-01 8 66525561 66525561 C T ARMC1 Missense_Mutation p.R128Q 0.30 tolerated(0.32) benign(0.005) TCGA-2W-A8YY-01 8 66539568 66539568 C T ARMC1 Silent p.R22R 0.27 TCGA-2W-A8YY-01 8 66622609 66622609 T C MTFR1 3'UTR 0.45 TCGA-2W-A8YY-01 8 66637103 66637103 C T PDE7A Missense_Mutation p.R325H 0.33 deleterious(0) possibly_damaging(0.757) TCGA-2W-A8YY-01 8 67066355 67066355 C T TRIM55 Missense_Mutation p.A437V 0.23 tolerated_low_confidence(0.31) benign(0.032) TCGA-2W-A8YY-01 8 67357510 67357510 C T ADHFE1 Silent p.V137V 0.40 TCGA-2W-A8YY-01 8 67488352 67488352 G A MYBL1 Nonsense_Mutation p.R454* 0.22 TCGA-2W-A8YY-01 8 67579413 67579413 C T VCPIP1 5'UTR 0.38 TCGA-2W-A8YY-01 8 68066313 68066313 C T CSPP1 Missense_Mutation p.P723L 0.42 tolerated(0.1) benign(0.098) TCGA-2W-A8YY-01 8 68084677 68084677 T C CSPP1 Missense_Mutation p.I947T 0.45 deleterious(0) benign(0.379) TCGA-2W-A8YY-01 8 68087566 68087566 C A CSPP1 Missense_Mutation p.L997M 0.31 deleterious(0) benign(0.256) TCGA-2W-A8YY-01 8 68112614 68112614 C T ARFGEF1 Intron 0.41 TCGA-2W-A8YY-01 8 68113960 68113960 C T ARFGEF1 Intron 0.68 TCGA-2W-A8YY-01 8 68139384 68139384 C T ARFGEF1 Missense_Mutation p.G1302R 0.40 tolerated(0.16) probably_damaging(0.979) TCGA-2W-A8YY-01 8 68139516 68139516 G A ARFGEF1 Missense_Mutation p.R1258W 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 68179178 68179178 C T ARFGEF1 Silent p.S618S 0.35 TCGA-2W-A8YY-01 8 68396965 68396965 G T CPA6 Missense_Mutation p.F232L 0.54 deleterious(0) possibly_damaging(0.513) TCGA-2W-A8YY-01 8 69028065 69028065 A C PREX2 Missense_Mutation p.N1075T 0.31 tolerated_low_confidence(0.57) benign(0.036) TCGA-2W-A8YY-01 8 69621260 69621260 G T C8orf34 Nonsense_Mutation p.E425* 0.48 TCGA-2W-A8YY-01 8 70488412 70488412 C T SULF1 Missense_Mutation p.A127V 0.38 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 8 70515508 70515508 C T SULF1 Silent p.D381D 0.43 TCGA-2W-A8YY-01 8 70571700 70571700 C T SULF1 3'UTR 0.55 TCGA-2W-A8YY-01 8 70970972 70970972 C A PRDM14 Missense_Mutation p.R430M 0.47 deleterious(0) possibly_damaging(0.819) TCGA-2W-A8YY-01 8 70981430 70981430 C T PRDM14 Silent p.A222A 0.44 TCGA-2W-A8YY-01 8 71050459 71050459 G A NCOA2 Missense_Mutation p.A1046V 0.30 tolerated(0.31) benign(0.002) TCGA-2W-A8YY-01 8 71060628 71060628 C T NCOA2 Missense_Mutation p.A829T 0.47 tolerated(0.25) benign(0.008) TCGA-2W-A8YY-01 8 71068770 71068770 C A NCOA2 Missense_Mutation p.K610N 0.42 deleterious(0.02) benign(0.376) TCGA-2W-A8YY-01 8 71574107 71574107 G A LACTB2 Missense_Mutation p.P50S 0.38 tolerated(0.13) benign(0.034) TCGA-2W-A8YY-01 8 72110453 72110453 G T EYA1 3'UTR 0.21 TCGA-2W-A8YY-01 8 72935137 72935137 G T TRPA1 3'UTR 0.42 TCGA-2W-A8YY-01 8 72968044 72968044 C T TRPA1 Missense_Mutation p.C414Y 0.39 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 7308251 7308251 C T SPAG11B Missense_Mutation p.G129D 0.15 tolerated_low_confidence(0.25) benign(0.006) TCGA-2W-A8YY-01 8 73849968 73849968 T C KCNB2 Missense_Mutation p.L793P 0.17 tolerated_low_confidence(0.16) benign(0.004) TCGA-2W-A8YY-01 8 74204631 74204631 C T RPL7 Missense_Mutation p.A45T 0.50 tolerated(0.13) benign(0.201) TCGA-2W-A8YY-01 8 74209649 74209649 C T RDH10 Silent p.C170C 0.39 TCGA-2W-A8YY-01 8 74235706 74235706 C A RDH10 3'UTR 0.18 TCGA-2W-A8YY-01 8 74351235 74351235 G A STAU2 Intron 0.45 TCGA-2W-A8YY-01 8 74507471 74507471 T - STAU2 Frame_Shift_Del p.N364Mfs*67 0.32 TCGA-2W-A8YY-01 8 74705975 74705975 G A UBE2W 3'UTR 0.28 TCGA-2W-A8YY-01 8 75147445 75147445 G A JPH1 3'UTR 0.40 TCGA-2W-A8YY-01 8 75171672 75171672 G A JPH1 Silent p.C402C 0.43 TCGA-2W-A8YY-01 8 75278147 75278147 G A GDAP1 3'UTR 0.58 TCGA-2W-A8YY-01 8 75757650 75757650 G A PI15 Missense_Mutation p.A187T 0.41 deleterious(0) possibly_damaging(0.59) TCGA-2W-A8YY-01 8 75765417 75765417 C T PI15 3'UTR 0.43 TCGA-2W-A8YY-01 8 75765608 75765608 A G PI15 3'UTR 0.50 TCGA-2W-A8YY-01 8 76471095 76471095 G A HNF4G Missense_Mutation p.G306S 0.35 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 8 7752265 7752265 C A DEFB4A Missense_Mutation p.L11I 0.11 tolerated(0.29) unknown(0) TCGA-2W-A8YY-01 8 77618177 77618177 C T ZFHX4 Silent p.C618C 0.12 TCGA-2W-A8YY-01 8 77763816 77763816 G T ZFHX4 Missense_Mutation p.K1553N 0.50 possibly_damaging(0.607) TCGA-2W-A8YY-01 8 77766059 77766059 A G ZFHX4 Missense_Mutation p.N2301S 0.29 benign(0.399) TCGA-2W-A8YY-01 8 77776779 77776779 G A ZFHX4 Missense_Mutation p.R3610Q 0.29 probably_damaging(0.975) TCGA-2W-A8YY-01 8 77779278 77779278 G A ZFHX4 3'UTR 0.41 TCGA-2W-A8YY-01 8 81412538 81412538 G A ZBTB10 Silent p.T594T 0.50 TCGA-2W-A8YY-01 8 8175544 8175544 A G SGK223 3'UTR 0.36 TCGA-2W-A8YY-01 8 8175953 8175953 C T SGK223 Missense_Mutation p.R1311H 0.38 probably_damaging(0.997) TCGA-2W-A8YY-01 8 82357140 82357140 C T PMP2 Missense_Mutation p.R53Q 0.49 tolerated(0.06) benign(0.015) TCGA-2W-A8YY-01 8 82359623 82359623 G A PMP2 5'UTR 0.56 TCGA-2W-A8YY-01 8 8239226 8239226 C T SGK223 Missense_Mutation p.S11N 0.08 benign(0.002) TCGA-2W-A8YY-01 8 82571591 82571591 C A IMPA1 Missense_Mutation p.D336Y 0.27 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-2W-A8YY-01 8 82571665 82571665 G A IMPA1 Missense_Mutation p.A311V 0.42 deleterious(0.04) benign(0.109) TCGA-2W-A8YY-01 8 82741710 82741710 C T SNX16 Nonsense_Mutation p.W139* 0.34 TCGA-2W-A8YY-01 8 85096533 85096533 C A RALYL 5'Flank 0.38 TCGA-2W-A8YY-01 8 85097231 85097231 G A RALYL 5'UTR 0.28 TCGA-2W-A8YY-01 8 8561019 8561019 G A CLDN23 3'UTR 0.27 TCGA-2W-A8YY-01 8 86035743 86035743 A G LRRCC1 Silent p.E342E 0.44 TCGA-2W-A8YY-01 8 86044024 86044024 C T LRRCC1 Missense_Mutation p.T599I 0.48 deleterious(0.01) benign(0.122) TCGA-2W-A8YY-01 8 86047136 86047136 C T LRRCC1 Missense_Mutation p.L675F 0.37 deleterious(0.01) possibly_damaging(0.566) TCGA-2W-A8YY-01 8 86057700 86057700 T G LRRCC1 Missense_Mutation p.I1018S 0.09 deleterious(0) probably_damaging(0.953) TCGA-2W-A8YY-01 8 86119688 86119688 T G E2F5 Silent p.P193P 0.08 TCGA-2W-A8YY-01 8 86126061 86126061 T A E2F5 Silent p.V335V 0.09 TCGA-2W-A8YY-01 8 86250633 86250633 T C CA1 Missense_Mutation p.N28S 0.42 deleterious(0.02) benign(0.008) TCGA-2W-A8YY-01 8 87126037 87126037 G T ATP6V0D2 Missense_Mutation p.R77I 0.42 deleterious(0.04) benign(0.005) TCGA-2W-A8YY-01 8 87226614 87226614 A T SLC7A13 3'UTR 0.35 TCGA-2W-A8YY-01 8 87439895 87439895 G A WWP1 Missense_Mutation p.R394H 0.37 deleterious(0.05) probably_damaging(1) TCGA-2W-A8YY-01 8 87440011 87440011 G A WWP1 Missense_Mutation p.A433T 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 8 87443954 87443954 G A WWP1 Missense_Mutation p.R528H 0.34 deleterious(0) benign(0.427) TCGA-2W-A8YY-01 8 8747878 8747878 G T MFHAS1 Silent p.R897R 0.35 TCGA-2W-A8YY-01 8 87498754 87498754 T - RMDN1 Frame_Shift_Del p.R152Efs*3 0.11 TCGA-2W-A8YY-01 8 87560538 87560538 G A CPNE3 Missense_Mutation p.D297N 0.42 deleterious(0) possibly_damaging(0.69) TCGA-2W-A8YY-01 8 87645085 87645085 T C CNGB3 Silent p.L405L 0.40 TCGA-2W-A8YY-01 8 88218228 88218228 C T CNBD1 Missense_Mutation p.H147Y 0.37 tolerated(0.37) benign(0.004) TCGA-2W-A8YY-01 8 89051794 89051794 A G MMP16 3'UTR 0.38 TCGA-2W-A8YY-01 8 89052627 89052627 G A MMP16 3'UTR 0.37 TCGA-2W-A8YY-01 8 90937386 90937386 C T OSGIN2 Missense_Mutation p.R426C 0.36 tolerated(0.34) benign(0.003) TCGA-2W-A8YY-01 8 92007476 92007476 G A TMEM55A 3'UTR 0.38 TCGA-2W-A8YY-01 8 92096245 92096245 C T OTUD6B Silent p.L264L 0.39 TCGA-2W-A8YY-01 8 92114936 92114936 C T LRRC69 Missense_Mutation p.T16M 0.43 deleterious(0.01) probably_damaging(0.927) TCGA-2W-A8YY-01 8 92355675 92355675 G A SLC26A7 Missense_Mutation p.S374N 0.26 tolerated(0.05) probably_damaging(0.999) TCGA-2W-A8YY-01 8 92365186 92365186 G T SLC26A7 Missense_Mutation p.D426Y 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 92407374 92407374 G A SLC26A7 3'Flank 0.49 TCGA-2W-A8YY-01 8 93003919 93003919 G A RUNX1T1 Silent p.D324D 0.33 TCGA-2W-A8YY-01 8 9473125 9473125 G A TNKS Missense_Mutation p.R311Q 0.18 tolerated(0.08) possibly_damaging(0.558) TCGA-2W-A8YY-01 8 94748224 94748224 G A RBM12B Missense_Mutation p.H139Y 0.38 tolerated(0.79) benign(0.125) TCGA-2W-A8YY-01 8 94817092 94817092 C T TMEM67 Missense_Mutation p.L809F 0.22 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 94822067 94822067 C A TMEM67 Missense_Mutation p.L906I 0.36 tolerated(0.32) possibly_damaging(0.851) TCGA-2W-A8YY-01 8 94935700 94935700 G A PDP1 Silent p.S496S 0.35 TCGA-2W-A8YY-01 8 95538766 95538766 A C KIAA1429 Missense_Mutation p.L569R 0.30 tolerated(0.19) benign(0.116) TCGA-2W-A8YY-01 8 95690556 95690556 G A ESRP1 Missense_Mutation p.A593T 0.11 tolerated(0.26) benign(0.039) TCGA-2W-A8YY-01 8 95718329 95718329 G A ESRP1 3'UTR 0.33 TCGA-2W-A8YY-01 8 95844337 95844337 G A INTS8 Missense_Mutation p.V230I 0.46 tolerated(0.51) benign(0.002) TCGA-2W-A8YY-01 8 95862259 95862259 A G INTS8 Missense_Mutation p.K483E 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 8 95877918 95877918 G A INTS8 Missense_Mutation p.R754Q 0.45 deleterious(0.01) possibly_damaging(0.56) TCGA-2W-A8YY-01 8 9588485 9588485 G A TNKS Missense_Mutation p.R696H 0.31 tolerated(0.27) probably_damaging(0.997) TCGA-2W-A8YY-01 8 95939465 95939465 C T TP53INP1 3'UTR 0.60 TCGA-2W-A8YY-01 8 96166751 96166751 G A PLEKHF2 Missense_Mutation p.R160H 0.22 tolerated(0.62) benign(0.01) TCGA-2W-A8YY-01 8 96166799 96166799 G A PLEKHF2 Missense_Mutation p.R176H 0.29 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 9623236 9623236 G A TNKS Missense_Mutation p.R1161Q 0.42 deleterious(0) probably_damaging(0.949) TCGA-2W-A8YY-01 8 9636833 9636833 G A TNKS 3'UTR 0.25 TCGA-2W-A8YY-01 8 97155860 97155860 C A GDF6 3'UTR 0.31 TCGA-2W-A8YY-01 8 97155996 97155996 C A GDF6 3'UTR 0.29 TCGA-2W-A8YY-01 8 97156947 97156947 C A GDF6 Missense_Mutation p.Q404H 0.45 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 8 97343295 97343295 C T PTDSS1 Silent p.I428I 0.41 TCGA-2W-A8YY-01 8 97623269 97623269 C A SDC2 3'UTR 0.15 TCGA-2W-A8YY-01 8 97847249 97847249 G T CPQ Missense_Mutation p.R161I 0.38 tolerated(0.06) benign(0.08) TCGA-2W-A8YY-01 8 98289399 98289399 C T TSPYL5 Missense_Mutation p.R225Q 0.31 tolerated(1) probably_damaging(0.987) TCGA-2W-A8YY-01 8 98699800 98699800 G A MTDH Missense_Mutation p.A238T 0.32 tolerated(0.08) benign(0.007) TCGA-2W-A8YY-01 8 99015964 99015964 G A MATN2 Missense_Mutation p.R427H 0.21 deleterious(0.03) benign(0.033) TCGA-2W-A8YY-01 8 99047924 99047924 G A MATN2 Missense_Mutation p.R952H 0.28 deleterious_low_confidence(0) benign(0.009) TCGA-2W-A8YY-01 8 99102024 99102024 G T C8orf47 Missense_Mutation p.R260I 0.20 tolerated(0.18) benign(0) TCGA-2W-A8YY-01 8 99142218 99142218 G A POP1 Missense_Mutation p.V167I 0.41 tolerated(0.19) possibly_damaging(0.625) TCGA-2W-A8YY-01 8 99161101 99161101 C A POP1 Missense_Mutation p.P590H 0.30 deleterious(0.03) benign(0.114) TCGA-2W-A8YY-01 8 99168280 99168280 G A POP1 Missense_Mutation p.R687H 0.37 tolerated(0.13) benign(0.127) TCGA-2W-A8YY-01 8 99170145 99170145 G A POP1 Silent p.K907K 0.39 TCGA-2W-A8YY-01 8 99440349 99440349 C T KCNS2 Missense_Mutation p.L48F 0.46 tolerated(0.13) benign(0.002) TCGA-2W-A8YY-01 8 99440487 99440487 G A KCNS2 Missense_Mutation p.A94T 0.32 deleterious(0) benign(0.071) TCGA-2W-A8YY-01 8 99440716 99440716 G A KCNS2 Missense_Mutation p.R170H 0.22 deleterious(0) probably_damaging(0.987) TCGA-2W-A8YY-01 8 99441033 99441033 G A KCNS2 Missense_Mutation p.V276M 0.36 tolerated(0.07) benign(0.084) TCGA-2W-A8YY-01 8 99467073 99467073 G A STK3 3'UTR 0.50 TCGA-2W-A8YY-01 8 99779547 99779547 C T STK3 Missense_Mutation p.A82T 0.22 deleterious(0.02) probably_damaging(0.989) TCGA-2W-A8YY-01 9 100128952 100128952 G A CCDC180 Missense_Mutation p.A1431T 0.37 tolerated(1) benign(0) TCGA-2W-A8YY-01 9 100232894 100232894 A G TDRD7 Missense_Mutation p.K562E 0.24 tolerated(0.98) benign(0.243) TCGA-2W-A8YY-01 9 100249536 100249536 G A TDRD7 Missense_Mutation p.V1000I 0.15 tolerated(0.23) benign(0.09) TCGA-2W-A8YY-01 9 100362494 100362494 G T TMOD1 3'UTR 0.41 TCGA-2W-A8YY-01 9 100362966 100362966 T C TMOD1 3'UTR 0.57 TCGA-2W-A8YY-01 9 100362990 100362990 G A TMOD1 3'UTR 0.25 TCGA-2W-A8YY-01 9 100367036 100367036 G T TSTD2 Missense_Mutation p.L409M 0.29 deleterious(0.01) possibly_damaging(0.866) TCGA-2W-A8YY-01 9 100426653 100426653 G A NCBP1 Missense_Mutation p.R610H 0.41 deleterious(0) probably_damaging(0.951) TCGA-2W-A8YY-01 9 100616328 100616328 C T FOXE1 Silent p.R44R 0.50 TCGA-2W-A8YY-01 9 100667129 100667129 C T C9orf156 Silent p.A404A 0.39 TCGA-2W-A8YY-01 9 100767398 100767398 C T ANP32B Silent p.A160A 0.29 TCGA-2W-A8YY-01 9 100893326 100893326 G A CORO2A Missense_Mutation p.P261S 0.50 deleterious(0.02) possibly_damaging(0.562) TCGA-2W-A8YY-01 9 100965586 100965586 G A TBC1D2 Missense_Mutation p.T752M 0.36 tolerated(0.1) benign(0.306) TCGA-2W-A8YY-01 9 101061566 101061566 G A GABBR2 Nonsense_Mutation p.Q828* 0.09 TCGA-2W-A8YY-01 9 101494757 101494757 C T ANKS6 3'UTR 0.20 TCGA-2W-A8YY-01 9 101507865 101507865 C T ANKS6 Silent p.A829A 0.11 TCGA-2W-A8YY-01 9 101539711 101539711 C A ANKS6 Missense_Mutation p.K531N 0.32 tolerated(0.11) benign(0.259) TCGA-2W-A8YY-01 9 101540614 101540614 G T ANKS6 Missense_Mutation p.F487L 0.20 tolerated(0.14) benign(0.084) TCGA-2W-A8YY-01 9 101589129 101589129 C T GALNT12 Silent p.L213L 0.46 TCGA-2W-A8YY-01 9 101777773 101777773 G A COL15A1 Silent p.E476E 0.10 TCGA-2W-A8YY-01 9 101818543 101818543 G A COL15A1 Missense_Mutation p.G1065D 0.31 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 101824324 101824324 C T COL15A1 Silent p.Y1158Y 0.43 TCGA-2W-A8YY-01 9 101911528 101911528 G A TGFBR1 Missense_Mutation p.A485T 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-2W-A8YY-01 9 101915278 101915279 - A TGFBR1 3'UTR 0.29 TCGA-2W-A8YY-01 9 102590424 102590424 G A NR4A3 Missense_Mutation p.D45N 0.52 deleterious(0) probably_damaging(0.975) TCGA-2W-A8YY-01 9 102628043 102628044 - T NR4A3 3'UTR 0.36 TCGA-2W-A8YY-01 9 102731848 102731848 C T STX17 3'UTR 0.50 TCGA-2W-A8YY-01 9 103066077 103066077 C T TEX10 Missense_Mutation p.R838Q 0.31 deleterious(0.04) probably_damaging(0.962) TCGA-2W-A8YY-01 9 103082586 103082586 T C TEX10 Silent p.T721T 0.40 TCGA-2W-A8YY-01 9 103082649 103082649 C A TEX10 Missense_Mutation p.Q700H 0.24 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 103088625 103088625 A G TEX10 Silent p.S646S 0.39 TCGA-2W-A8YY-01 9 103338827 103338827 G A TMEFF1 Missense_Mutation p.R363Q 0.30 deleterious(0) probably_damaging(0.968) TCGA-2W-A8YY-01 9 103348334 103348334 G T MURC Missense_Mutation p.E232D 0.54 deleterious(0.02) probably_damaging(0.998) TCGA-2W-A8YY-01 9 104124322 104124322 C T BAAT 3'UTR 0.40 TCGA-2W-A8YY-01 9 104125022 104125022 C A BAAT Missense_Mutation p.E315D 0.08 deleterious(0) benign(0.216) TCGA-2W-A8YY-01 9 104161229 104161229 G A ZNF189 5'Flank 0.43 TCGA-2W-A8YY-01 9 104183909 104183909 G A ALDOB 3'UTR 0.48 TCGA-2W-A8YY-01 9 104238192 104238192 G A TMEM246 Missense_Mutation p.R395W 0.29 deleterious(0) possibly_damaging(0.642) TCGA-2W-A8YY-01 9 104323378 104323378 G A RNF20 Missense_Mutation p.E839K 0.27 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 9 104385694 104385694 G A GRIN3A Silent p.D840D 0.34 TCGA-2W-A8YY-01 9 104449192 104449192 G A GRIN3A Silent p.C330C 0.33 TCGA-2W-A8YY-01 9 104449377 104449377 G T GRIN3A Missense_Mutation p.L269M 0.46 tolerated(0.06) benign(0.12) TCGA-2W-A8YY-01 9 107332343 107332343 C T OR13C8 Nonsense_Mutation p.R299* 0.41 TCGA-2W-A8YY-01 9 107380319 107380319 T C OR13C9 Missense_Mutation p.H56R 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-2W-A8YY-01 9 107528732 107528732 C T NIPSNAP3B Missense_Mutation p.R63W 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-2W-A8YY-01 9 107568562 107568562 G A ABCA1 Missense_Mutation p.P1475L 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 107588035 107588035 G A ABCA1 Missense_Mutation p.S824L 0.39 deleterious(0.02) benign(0.322) TCGA-2W-A8YY-01 9 107589278 107589278 A G ABCA1 Missense_Mutation p.L763P 0.16 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 9 107594063 107594063 G T ABCA1 Missense_Mutation p.L519I 0.45 deleterious(0.02) benign(0.285) TCGA-2W-A8YY-01 9 108118516 108118516 G A SLC44A1 Missense_Mutation p.R175H 0.53 deleterious(0) probably_damaging(0.947) TCGA-2W-A8YY-01 9 108275113 108275113 C A FSD1L Silent p.S307S 0.17 TCGA-2W-A8YY-01 9 108366695 108366695 G T FKTN Missense_Mutation p.R190I 0.35 deleterious(0) possibly_damaging(0.496) TCGA-2W-A8YY-01 9 108398998 108398998 A G FKTN 3'UTR 0.14 TCGA-2W-A8YY-01 9 108483957 108483957 T C TMEM38B Missense_Mutation p.Y137H 0.38 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 9 108484837 108484837 G A TMEM38B Silent p.T159T 0.11 TCGA-2W-A8YY-01 9 109687424 109687424 C A ZNF462 Missense_Mutation p.L411M 0.30 possibly_damaging(0.665) TCGA-2W-A8YY-01 9 109689893 109689893 C T ZNF462 Nonsense_Mutation p.R1234* 0.17 TCGA-2W-A8YY-01 9 109691205 109691205 C T ZNF462 Missense_Mutation p.T1671M 0.50 probably_damaging(0.999) TCGA-2W-A8YY-01 9 109692945 109692945 T C ZNF462 Missense_Mutation p.V1996A 0.52 benign(0.282) TCGA-2W-A8YY-01 9 110247247 110247247 C T KLF4 3'UTR 0.29 TCGA-2W-A8YY-01 9 110247355 110247355 G A KLF4 3'UTR 0.31 TCGA-2W-A8YY-01 9 110247646 110247646 G A KLF4 3'UTR 0.45 TCGA-2W-A8YY-01 9 110247872 110247872 T - KLF4 3'UTR 0.40 TCGA-2W-A8YY-01 9 110247994 110247994 C T KLF4 3'UTR 0.38 TCGA-2W-A8YY-01 9 110251266 110251266 G A KLF4 Missense_Mutation p.A24V 0.10 tolerated(0.07) probably_damaging(0.972) TCGA-2W-A8YY-01 9 111617237 111617237 C T ACTL7B Missense_Mutation p.R325H 0.46 deleterious(0.03) benign(0.005) TCGA-2W-A8YY-01 9 111618193 111618193 G A ACTL7B Silent p.S6S 0.27 TCGA-2W-A8YY-01 9 111625762 111625762 C T ACTL7A Missense_Mutation p.P387L 0.17 tolerated(0.96) probably_damaging(1) TCGA-2W-A8YY-01 9 111631023 111631023 G A IKBKAP 3'UTR 0.14 TCGA-2W-A8YY-01 9 111705014 111705014 A G CTNNAL1 3'UTR 0.12 TCGA-2W-A8YY-01 9 111741603 111741603 C T CTNNAL1 Silent p.A353A 0.31 TCGA-2W-A8YY-01 9 111745544 111745544 C T CTNNAL1 Missense_Mutation p.V261I 0.53 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 111909454 111909454 G A FRRS1L Silent p.G164G 0.24 TCGA-2W-A8YY-01 9 111935192 111935192 G T EPB41L4B 3'UTR 0.19 TCGA-2W-A8YY-01 9 111935495 111935495 C T EPB41L4B 3'UTR 0.42 TCGA-2W-A8YY-01 9 111947885 111947885 C T EPB41L4B Missense_Mutation p.A768T 0.39 tolerated_low_confidence(0.07) benign(0.169) TCGA-2W-A8YY-01 9 112020560 112020560 C T EPB41L4B Missense_Mutation p.E217K 0.39 deleterious(0) probably_damaging(0.966) TCGA-2W-A8YY-01 9 112140565 112140565 C T PTPN3 3'UTR 0.26 TCGA-2W-A8YY-01 9 112144599 112144599 G A PTPN3 Silent p.P837P 0.38 TCGA-2W-A8YY-01 9 112144692 112144692 G A PTPN3 Silent p.Y806Y 0.42 TCGA-2W-A8YY-01 9 112225602 112225602 C T PTPN3 Missense_Mutation p.G38D 0.38 tolerated(0.68) probably_damaging(0.997) TCGA-2W-A8YY-01 9 112705989 112705989 G A PALM2 3'Flank 0.39 TCGA-2W-A8YY-01 9 112899437 112899437 G A PALM2-AKAP2 Missense_Mutation p.S538N 0.54 tolerated(0.46) benign(0.008) TCGA-2W-A8YY-01 9 112899814 112899814 G A PALM2-AKAP2 Missense_Mutation p.E664K 0.28 tolerated(0.13) possibly_damaging(0.88) TCGA-2W-A8YY-01 9 112934335 112934335 C T PALM2-AKAP2 3'UTR 0.21 TCGA-2W-A8YY-01 9 112934455 112934455 G A PALM2-AKAP2 3'UTR 0.54 TCGA-2W-A8YY-01 9 113100108 113100108 C T TXNDC8 5'Flank 0.41 TCGA-2W-A8YY-01 9 113189983 113189983 G A SVEP1 Missense_Mutation p.P1955S 0.17 possibly_damaging(0.864) TCGA-2W-A8YY-01 9 113221386 113221386 A T SVEP1 Nonsense_Mutation p.C1110* 0.40 TCGA-2W-A8YY-01 9 113312282 113312282 G A SVEP1 Nonsense_Mutation p.R212* 0.32 TCGA-2W-A8YY-01 9 114155137 114155137 C A KIAA0368 Missense_Mutation p.K1179N 0.39 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 9 114304203 114304203 C T ZNF483 Missense_Mutation p.R330W 0.45 tolerated(0.18) possibly_damaging(0.689) TCGA-2W-A8YY-01 9 114371380 114371380 C T LRRC37A5P RNA 0.12 TCGA-2W-A8YY-01 9 114416172 114416172 C T DNAJC25 3'UTR 0.24 TCGA-2W-A8YY-01 9 114521550 114521550 C T C9orf84 Intron 0.54 TCGA-2W-A8YY-01 9 114860789 114860789 G A SUSD1 Missense_Mutation p.R479W 0.38 tolerated(0.14) benign(0.001) TCGA-2W-A8YY-01 9 114984363 114984363 G A PTBP3 3'UTR 0.31 TCGA-2W-A8YY-01 9 114985079 114985079 A G PTBP3 3'UTR 0.25 TCGA-2W-A8YY-01 9 115336704 115336704 G A KIAA1958 Missense_Mutation p.R115Q 0.33 tolerated(0.41) possibly_damaging(0.799) TCGA-2W-A8YY-01 9 115422317 115422317 C T KIAA1958 Missense_Mutation p.R707W 0.36 deleterious_low_confidence(0) benign(0.346) TCGA-2W-A8YY-01 9 115626539 115626539 G A SNX30 Missense_Mutation p.V372I 0.43 tolerated(0.46) probably_damaging(0.996) TCGA-2W-A8YY-01 9 115652058 115652058 C T SLC46A2 Missense_Mutation p.D302N 0.34 tolerated(0.3) probably_damaging(0.981) TCGA-2W-A8YY-01 9 115946082 115946082 C T FKBP15 Missense_Mutation p.R587Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 115946582 115946582 C T FKBP15 Missense_Mutation p.R569Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 116024350 116024350 T C SLC31A1 3'UTR 0.46 TCGA-2W-A8YY-01 9 116024755 116024755 C A SLC31A1 3'UTR 0.44 TCGA-2W-A8YY-01 9 116049072 116049072 C T PRPF4 Missense_Mutation p.A300V 0.44 deleterious(0.01) possibly_damaging(0.886) TCGA-2W-A8YY-01 9 116052763 116052763 G A PRPF4 Missense_Mutation p.R348H 0.39 deleterious(0.04) benign(0.382) TCGA-2W-A8YY-01 9 116059851 116059851 C T RNF183 3'UTR 0.32 TCGA-2W-A8YY-01 9 116079127 116079127 C T WDR31 Missense_Mutation p.A336T 0.13 tolerated(0.82) benign(0) TCGA-2W-A8YY-01 9 116131910 116131910 C T BSPRY Missense_Mutation p.R233W 0.53 tolerated(0.08) possibly_damaging(0.892) TCGA-2W-A8YY-01 9 116263851 116263851 G A RGS3 Intron 0.45 TCGA-2W-A8YY-01 9 116269650 116269650 G A RGS3 Missense_Mutation p.R390Q 0.11 deleterious(0.05) probably_damaging(0.961) TCGA-2W-A8YY-01 9 116356263 116356263 G A RGS3 Intron 0.09 TCGA-2W-A8YY-01 9 116473 116473 C T FOXD4 3'UTR 0.06 TCGA-2W-A8YY-01 9 116703 116703 G A FOXD4 3'UTR 0.32 TCGA-2W-A8YY-01 9 116764908 116764908 C T ZNF618 Silent p.T140T 0.30 TCGA-2W-A8YY-01 9 116791178 116791178 G A ZNF618 Intron 0.46 TCGA-2W-A8YY-01 9 116807 116807 G A FOXD4 Missense_Mutation p.P438L 0.23 benign(0.002) TCGA-2W-A8YY-01 9 116810194 116810194 C T ZNF618 Missense_Mutation p.A330V 0.30 tolerated_low_confidence(0.15) benign(0.019) TCGA-2W-A8YY-01 9 116810212 116810212 C T ZNF618 Missense_Mutation p.S336L 0.28 deleterious_low_confidence(0) benign(0.294) TCGA-2W-A8YY-01 9 116811450 116811450 C T ZNF618 Missense_Mutation p.T530M 0.29 tolerated(0.09) benign(0.33) TCGA-2W-A8YY-01 9 116811863 116811863 C T ZNF618 Silent p.L668L 0.68 TCGA-2W-A8YY-01 9 116813577 116813577 C T ZNF618 3'UTR 0.25 TCGA-2W-A8YY-01 9 116816914 116816914 A G ZNF618 3'UTR 0.23 TCGA-2W-A8YY-01 9 116836317 116836317 G A AMBP Silent p.Y151Y 0.27 TCGA-2W-A8YY-01 9 116930358 116930358 G A COL27A1 Missense_Mutation p.G175R 0.33 unknown(0) TCGA-2W-A8YY-01 9 116931371 116931371 G A COL27A1 Silent p.S512S 0.45 TCGA-2W-A8YY-01 9 117002729 117002729 C T COL27A1 Nonsense_Mutation p.R933* 0.45 TCGA-2W-A8YY-01 9 117027389 117027389 C A COL27A1 Missense_Mutation p.P1113H 0.42 probably_damaging(0.988) TCGA-2W-A8YY-01 9 117038045 117038045 C T COL27A1 Silent p.V1238V 0.33 TCGA-2W-A8YY-01 9 117044 117044 C T FOXD4 Missense_Mutation p.R359Q 0.26 deleterious(0.04) benign(0) TCGA-2W-A8YY-01 9 117104374 117104374 C T AKNA Silent p.P1263P 0.45 TCGA-2W-A8YY-01 9 117124690 117124690 G A AKNA Missense_Mutation p.R638C 0.39 tolerated(0.28) benign(0.034) TCGA-2W-A8YY-01 9 117240745 117240745 T G DFNB31 Intron 0.47 TCGA-2W-A8YY-01 9 117240833 117240834 - T DFNB31 Frame_Shift_Ins p.V280Gfs*20 0.35 TCGA-2W-A8YY-01 9 117266751 117266751 C A DFNB31 Missense_Mutation p.A111S 0.36 tolerated(1) benign(0.012) TCGA-2W-A8YY-01 9 117808722 117808722 G A TNC Nonsense_Mutation p.R1698* 0.26 TCGA-2W-A8YY-01 9 117835985 117835985 G T TNC Silent p.S1037S 0.41 TCGA-2W-A8YY-01 9 117846614 117846614 G A TNC Missense_Mutation p.R669C 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 9 119115108 119115108 G A PAPPA Missense_Mutation p.R1363Q 0.25 tolerated(0.61) benign(0.057) TCGA-2W-A8YY-01 9 119163689 119163689 G A PAPPA 3'UTR 0.12 TCGA-2W-A8YY-01 9 119163693 119163693 G A PAPPA 3'UTR 0.34 TCGA-2W-A8YY-01 9 119903695 119903695 G A ASTN2 Intron 0.32 TCGA-2W-A8YY-01 9 119943389 119943389 C T ASTN2 Intron 0.54 TCGA-2W-A8YY-01 9 123169289 123169289 C T CDK5RAP2 Splice_Site p.X1655_splice 0.30 TCGA-2W-A8YY-01 9 123177392 123177392 C T CDK5RAP2 Missense_Mutation p.R1408H 0.29 tolerated(0.08) probably_damaging(0.964) TCGA-2W-A8YY-01 9 123182232 123182232 C T CDK5RAP2 Silent p.E1337E 0.24 TCGA-2W-A8YY-01 9 123199801 123199801 C T CDK5RAP2 Missense_Mutation p.D1243N 0.33 tolerated(0.09) possibly_damaging(0.821) TCGA-2W-A8YY-01 9 123202217 123202217 C T CDK5RAP2 Missense_Mutation p.S1061N 0.17 tolerated(0.14) benign(0.294) TCGA-2W-A8YY-01 9 123222895 123222895 G A CDK5RAP2 Silent p.D719D 0.36 TCGA-2W-A8YY-01 9 123313104 123313104 T C CDK5RAP2 Missense_Mutation p.E91G 0.12 deleterious(0) possibly_damaging(0.728) TCGA-2W-A8YY-01 9 123526650 123526650 G A FBXW2 3'UTR 0.28 TCGA-2W-A8YY-01 9 123618758 123618758 C T PHF19 3'UTR 0.38 TCGA-2W-A8YY-01 9 123715107 123715107 G T C5 Nonsense_Mutation p.Y1647* 0.33 TCGA-2W-A8YY-01 9 123719629 123719629 T C C5 Missense_Mutation p.T1566A 0.25 tolerated(0.6) benign(0.232) TCGA-2W-A8YY-01 9 123724966 123724966 T C C5 Missense_Mutation p.Y1496C 0.39 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 9 123731357 123731357 C T C5 Missense_Mutation p.R1401H 0.44 tolerated(0.05) benign(0.03) TCGA-2W-A8YY-01 9 123783970 123783970 C T C5 Silent p.V373V 0.46 TCGA-2W-A8YY-01 9 123880626 123880626 T G CNTRL Missense_Mutation p.I486M 0.25 benign(0.129) TCGA-2W-A8YY-01 9 123933770 123933770 C T CNTRL Missense_Mutation p.R2121C 0.18 probably_damaging(0.932) TCGA-2W-A8YY-01 9 123943422 123943422 C T RAB14 3'UTR 0.11 TCGA-2W-A8YY-01 9 123943704 123943704 G A RAB14 Silent p.P206P 0.43 TCGA-2W-A8YY-01 9 124074538 124074538 G A GSN Intron 0.27 TCGA-2W-A8YY-01 9 124088816 124088816 C T GSN Silent p.P532P 0.36 TCGA-2W-A8YY-01 9 124093741 124093741 G A GSN Intron 0.53 TCGA-2W-A8YY-01 9 124110408 124110408 G A AL161784.1 Missense_Mutation p.V60M 0.32 possibly_damaging(0.788) TCGA-2W-A8YY-01 9 124115524 124115524 T C STOM Missense_Mutation p.I99V 0.28 tolerated(1) benign(0.006) TCGA-2W-A8YY-01 9 124522304 124522304 C T DAB2IP Silent p.D224D 0.39 TCGA-2W-A8YY-01 9 124525922 124525922 G A DAB2IP Missense_Mutation p.A409T 0.33 tolerated(0.26) benign(0.129) TCGA-2W-A8YY-01 9 124528882 124528882 C T DAB2IP Missense_Mutation p.R496C 0.13 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 124538518 124538518 G A DAB2IP Silent p.K1026K 0.24 TCGA-2W-A8YY-01 9 124545901 124545901 C T DAB2IP 3'UTR 0.37 TCGA-2W-A8YY-01 9 124966734 124966734 T C LHX6 3'UTR 0.29 TCGA-2W-A8YY-01 9 125023734 125023734 G A RBM18 Missense_Mutation p.A13V 0.55 deleterious(0.02) probably_damaging(0.913) TCGA-2W-A8YY-01 9 125140838 125140838 G A PTGS1 Missense_Mutation p.R113H 0.47 deleterious(0) possibly_damaging(0.829) TCGA-2W-A8YY-01 9 125273201 125273201 G T OR1J2 Missense_Mutation p.G41W 0.41 deleterious_low_confidence(0) possibly_damaging(0.623) TCGA-2W-A8YY-01 9 125289275 125289275 A G OR1N1 Missense_Mutation p.Y100H 0.33 tolerated(0.06) probably_damaging(0.997) TCGA-2W-A8YY-01 9 125329956 125329956 G A OR1L8 Silent p.Y267Y 0.46 TCGA-2W-A8YY-01 9 125330261 125330261 G A OR1L8 Missense_Mutation p.R166C 0.35 deleterious(0.01) benign(0.035) TCGA-2W-A8YY-01 9 125390945 125390945 C T OR1B1 Silent p.L290L 0.46 TCGA-2W-A8YY-01 9 125423887 125423887 T G OR1L1 5'Flank 0.35 TCGA-2W-A8YY-01 9 125512433 125512433 T C OR1L6 Missense_Mutation p.Y103H 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 9 125563016 125563016 C T OR1K1 Silent p.A205A 0.40 TCGA-2W-A8YY-01 9 125563068 125563068 G A OR1K1 Missense_Mutation p.A223T 0.32 tolerated(0.2) benign(0.023) TCGA-2W-A8YY-01 9 125581974 125581974 C T PDCL 3'UTR 0.38 TCGA-2W-A8YY-01 9 125616522 125616522 A - RC3H2 Frame_Shift_Del p.L975Yfs*14 0.67 TCGA-2W-A8YY-01 9 125617486 125617486 G A RC3H2 Missense_Mutation p.A931V 0.39 deleterious(0.05) benign(0.062) TCGA-2W-A8YY-01 9 125652648 125652648 A G RC3H2 Silent p.L176L 0.35 TCGA-2W-A8YY-01 9 125673400 125673400 G A ZBTB6 Missense_Mutation p.R318C 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-2W-A8YY-01 9 125782594 125782594 C T RABGAP1 Silent p.L550L 0.34 TCGA-2W-A8YY-01 9 125865425 125865425 C T RABGAP1 Missense_Mutation p.T1048M 0.43 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 9 125898431 125898431 G A STRBP Silent p.G554G 0.44 TCGA-2W-A8YY-01 9 125922730 125922730 A G STRBP Silent p.N213N 0.14 TCGA-2W-A8YY-01 9 126132424 126132424 G A CRB2 Silent p.S364S 0.37 TCGA-2W-A8YY-01 9 126135470 126135470 C T CRB2 Missense_Mutation p.A887V 0.48 tolerated(0.64) unknown(0) TCGA-2W-A8YY-01 9 126136287 126136287 G A CRB2 Intron 0.32 TCGA-2W-A8YY-01 9 126144557 126144557 G A DENND1A Silent p.G728G 0.36 TCGA-2W-A8YY-01 9 127076235 127076235 G A NEK6 Missense_Mutation p.D123N 0.40 tolerated(0.09) probably_damaging(0.97) TCGA-2W-A8YY-01 9 127076253 127076253 G A NEK6 Missense_Mutation p.G129S 0.43 tolerated(0.23) benign(0.066) TCGA-2W-A8YY-01 9 127088678 127088678 G A NEK6 Missense_Mutation p.A193T 0.37 deleterious(0) probably_damaging(0.947) TCGA-2W-A8YY-01 9 127218991 127218991 C T GPR144 Missense_Mutation p.R514C 0.09 tolerated(0.05) benign(0.129) TCGA-2W-A8YY-01 9 127232872 127232872 C T GPR144 Silent p.A886A 0.43 TCGA-2W-A8YY-01 9 127284826 127284826 A - NR6A1 3'UTR 0.17 TCGA-2W-A8YY-01 9 127298158 127298158 T C NR6A1 Missense_Mutation p.R360G 0.14 tolerated(0.38) benign(0.022) TCGA-2W-A8YY-01 9 127316674 127316674 C T NR6A1 Silent p.R106R 0.56 TCGA-2W-A8YY-01 9 127456015 127456015 C A NR6A1 Intron 0.23 TCGA-2W-A8YY-01 9 127572479 127572479 G T OLFML2A Missense_Mutation p.G583C 0.39 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 9 127640766 127640766 G A GOLGA1 3'UTR 0.41 TCGA-2W-A8YY-01 9 127701016 127701016 G A GOLGA1 5'UTR 0.52 TCGA-2W-A8YY-01 9 127734037 127734037 G A SCAI Missense_Mutation p.R519C 0.35 deleterious(0.03) benign(0.237) TCGA-2W-A8YY-01 9 127818154 127818154 C T SCAI Splice_Site p.X100_splice 0.42 TCGA-2W-A8YY-01 9 127915847 127915847 C A PPP6C Missense_Mutation p.A249S 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 127916212 127916212 T G PPP6C Missense_Mutation p.K181N 0.45 tolerated(0.14) benign(0.042) TCGA-2W-A8YY-01 9 127982630 127982630 C T RABEPK Intron 0.54 TCGA-2W-A8YY-01 9 128001245 128001245 C T HSPA5 Missense_Mutation p.R324Q 0.39 deleterious_low_confidence(0.03) benign(0.431) TCGA-2W-A8YY-01 9 128003324 128003324 C T HSPA5 Missense_Mutation p.G28S 0.36 deleterious_low_confidence(0.04) benign(0.31) TCGA-2W-A8YY-01 9 128126978 128126978 T C GAPVD1 3'Flank 0.46 TCGA-2W-A8YY-01 9 128127211 128127211 T - GAPVD1 3'Flank 0.46 TCGA-2W-A8YY-01 9 128201015 128201015 G A MAPKAP1 3'UTR 0.27 TCGA-2W-A8YY-01 9 12821772 12821772 G A LURAP1L 3'UTR 0.49 TCGA-2W-A8YY-01 9 12821901 12821901 C A LURAP1L 3'UTR 0.36 TCGA-2W-A8YY-01 9 128728169 128728169 C A PBX3 Silent p.G424G 0.48 TCGA-2W-A8YY-01 9 128729351 128729351 T G PBX3 3'UTR 0.37 TCGA-2W-A8YY-01 9 129594936 129594936 G A ZBTB43 Missense_Mutation p.V50I 0.32 tolerated(0.07) probably_damaging(0.984) TCGA-2W-A8YY-01 9 129643095 129643095 G A ZBTB34 Missense_Mutation p.V469M 0.40 deleterious_low_confidence(0.02) benign(0.001) TCGA-2W-A8YY-01 9 129645032 129645033 - T ZBTB34 3'UTR 0.13 TCGA-2W-A8YY-01 9 129850171 129850171 T A ANGPTL2 3'UTR 0.38 TCGA-2W-A8YY-01 9 129850204 129850204 A C ANGPTL2 3'UTR 0.13 TCGA-2W-A8YY-01 9 129870705 129870705 C A ANGPTL2 Missense_Mutation p.Q102H 0.31 deleterious(0.02) possibly_damaging(0.807) TCGA-2W-A8YY-01 9 129870935 129870935 C T ANGPTL2 Missense_Mutation p.G26S 0.31 tolerated_low_confidence(0.54) benign(0) TCGA-2W-A8YY-01 9 129985143 129985143 C T RALGPS1 3'UTR 0.41 TCGA-2W-A8YY-01 9 130149473 130149473 C T GARNL3 Missense_Mutation p.S797L 0.46 tolerated(0.37) probably_damaging(0.999) TCGA-2W-A8YY-01 9 130155499 130155499 C T GARNL3 Missense_Mutation p.A1003V 0.56 deleterious_low_confidence(0.02) benign(0.046) TCGA-2W-A8YY-01 9 130166072 130166072 C T SLC2A8 Missense_Mutation p.A286V 0.29 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 9 130167187 130167187 C T SLC2A8 Missense_Mutation p.S356L 0.35 tolerated(0.41) benign(0.001) TCGA-2W-A8YY-01 9 130169682 130169682 C A SLC2A8 3'UTR 0.30 TCGA-2W-A8YY-01 9 130213395 130213395 G T RPL12 Intron 0.36 TCGA-2W-A8YY-01 9 130213482 130213482 T C RPL12 Intron 0.31 TCGA-2W-A8YY-01 9 130236172 130236172 C T LRSAM1 Missense_Mutation p.P238S 0.14 tolerated(0.41) benign(0.009) TCGA-2W-A8YY-01 9 130259537 130259537 C T LRSAM1 Silent p.G612G 0.28 TCGA-2W-A8YY-01 9 130265229 130265229 A G LRSAM1 3'UTR 0.38 TCGA-2W-A8YY-01 9 130267774 130267774 C A FAM129B 3'UTR 0.33 TCGA-2W-A8YY-01 9 130280169 130280169 C T FAM129B Missense_Mutation p.R214H 0.41 tolerated(0.08) probably_damaging(0.992) TCGA-2W-A8YY-01 9 130422340 130422340 A G STXBP1 Missense_Mutation p.D93G 0.34 tolerated(0.65) possibly_damaging(0.69) TCGA-2W-A8YY-01 9 130425549 130425549 G T STXBP1 Missense_Mutation p.K165N 0.40 deleterious(0.04) possibly_damaging(0.675) TCGA-2W-A8YY-01 9 130453280 130453280 T C STXBP1 3'UTR 0.33 TCGA-2W-A8YY-01 9 130454693 130454693 G A STXBP1 3'UTR 0.32 TCGA-2W-A8YY-01 9 130511556 130511556 C T SH2D3C Missense_Mutation p.R358H 0.55 deleterious(0.05) probably_damaging(0.999) TCGA-2W-A8YY-01 9 130569880 130569880 C T FPGS Silent p.C219C 0.37 TCGA-2W-A8YY-01 9 130570932 130570932 C T FPGS Silent p.A306A 0.32 TCGA-2W-A8YY-01 9 130579551 130579551 C T ENG Intron 0.36 TCGA-2W-A8YY-01 9 130648957 130648957 C T ST6GALNAC6 Missense_Mutation p.R308H 0.43 probably_damaging(1) TCGA-2W-A8YY-01 9 130670721 130670721 C T ST6GALNAC4 Missense_Mutation p.A287T 0.47 probably_damaging(1) TCGA-2W-A8YY-01 9 130703735 130703735 C T FAM102A 3'UTR 0.35 TCGA-2W-A8YY-01 9 130707168 130707168 C T FAM102A Silent p.K309K 0.45 TCGA-2W-A8YY-01 9 130883413 130883413 C T PTGES2 3'UTR 0.26 TCGA-2W-A8YY-01 9 130984829 130984829 G A DNM1 Missense_Mutation p.R361H 0.46 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 9 131019941 131019941 T C GOLGA2 Missense_Mutation p.E859G 0.35 deleterious(0.05) possibly_damaging(0.844) TCGA-2W-A8YY-01 9 131028596 131028596 C A GOLGA2 Missense_Mutation p.Q190H 0.07 deleterious(0.04) possibly_damaging(0.607) TCGA-2W-A8YY-01 9 131073860 131073860 G T TRUB2 Missense_Mutation p.L161M 0.20 tolerated(0.08) probably_damaging(0.971) TCGA-2W-A8YY-01 9 131088114 131088114 C T COQ4 Missense_Mutation p.P119L 0.30 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 9 131112771 131112771 G A SLC27A4 Missense_Mutation p.R265H 0.40 tolerated(0.53) probably_damaging(1) TCGA-2W-A8YY-01 9 131122679 131122679 C T SLC27A4 Missense_Mutation p.P614L 0.26 tolerated(0.06) benign(0.001) TCGA-2W-A8YY-01 9 131152229 131152229 G T URM1 3'UTR 0.38 TCGA-2W-A8YY-01 9 131152320 131152320 C T URM1 3'UTR 0.58 TCGA-2W-A8YY-01 9 131186871 131186871 C T CERCAM Silent p.F248F 0.49 TCGA-2W-A8YY-01 9 131190694 131190694 G A CERCAM Missense_Mutation p.A294T 0.29 tolerated(0.06) possibly_damaging(0.488) TCGA-2W-A8YY-01 9 131198113 131198113 C T CERCAM Missense_Mutation p.R573C 0.14 deleterious(0) possibly_damaging(0.841) TCGA-2W-A8YY-01 9 131277857 131277857 G - GLE1 Frame_Shift_Del p.I126Sfs*16 0.31 TCGA-2W-A8YY-01 9 131348086 131348086 G A SPTAN1 Missense_Mutation p.A874T 0.20 tolerated(0.22) benign(0.006) TCGA-2W-A8YY-01 9 131378108 131378108 G A SPTAN1 Silent p.E1782E 0.36 TCGA-2W-A8YY-01 9 131394406 131394406 C T SPTAN1 Missense_Mutation p.R2255C 0.09 deleterious(0) benign(0.042) TCGA-2W-A8YY-01 9 131395135 131395135 C T SPTAN1 Silent p.R2403R 0.65 TCGA-2W-A8YY-01 9 131395204 131395204 G A SPTAN1 Silent p.K2426K 0.21 TCGA-2W-A8YY-01 9 131395670 131395670 T C SPTAN1 3'UTR 0.27 TCGA-2W-A8YY-01 9 131396030 131396030 G A WDR34 Missense_Mutation p.A535V 0.39 deleterious(0.03) possibly_damaging(0.683) TCGA-2W-A8YY-01 9 131403110 131403110 G A WDR34 Missense_Mutation p.P99S 0.39 tolerated(0.9) benign(0.001) TCGA-2W-A8YY-01 9 131454236 131454236 A C SET Missense_Mutation p.K90N 0.27 tolerated(0.05) benign(0.208) TCGA-2W-A8YY-01 9 131464969 131464969 G A PKN3 5'UTR 0.27 TCGA-2W-A8YY-01 9 131469621 131469621 C T PKN3 Missense_Mutation p.R258W 0.34 deleterious(0.02) benign(0.013) TCGA-2W-A8YY-01 9 131482868 131482868 C T PKN3 Nonsense_Mutation p.R885* 0.11 TCGA-2W-A8YY-01 9 131483437 131483437 C T ZDHHC12 3'UTR 0.47 TCGA-2W-A8YY-01 9 131503067 131503067 A G ZER1 Missense_Mutation p.F613L 0.34 deleterious(0.01) possibly_damaging(0.867) TCGA-2W-A8YY-01 9 131568278 131568278 C T TBC1D13 Silent p.L353L 0.43 TCGA-2W-A8YY-01 9 131568287 131568287 C T TBC1D13 Silent p.C356C 0.34 TCGA-2W-A8YY-01 9 131584875 131584875 G A ENDOG Missense_Mutation p.A294T 0.29 deleterious_low_confidence(0.01) benign(0.162) TCGA-2W-A8YY-01 9 13162693 13162693 C T MPDZ Missense_Mutation p.G1119D 0.28 tolerated(0.28) benign(0.139) TCGA-2W-A8YY-01 9 131679225 131679225 C T LRRC8A 3'UTR 0.29 TCGA-2W-A8YY-01 9 131679814 131679814 G A LRRC8A 3'UTR 0.37 TCGA-2W-A8YY-01 9 131755572 131755572 C T NUP188 Missense_Mutation p.R913C 0.09 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 9 13176354 13176354 A G MPDZ Silent p.Y904Y 0.40 TCGA-2W-A8YY-01 9 131830109 131830109 G A FAM73B Missense_Mutation p.E410K 0.10 tolerated(0.05) possibly_damaging(0.544) TCGA-2W-A8YY-01 9 131832161 131832161 G A FAM73B Missense_Mutation p.V498I 0.24 tolerated(1) benign(0.082) TCGA-2W-A8YY-01 9 13188827 13188827 C T MPDZ Missense_Mutation p.A774T 0.12 tolerated(0.18) probably_damaging(0.996) TCGA-2W-A8YY-01 9 13221438 13221438 C T MPDZ Missense_Mutation p.G270D 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 132382023 132382023 G T C9orf50 Missense_Mutation p.L199M 0.42 deleterious(0.01) probably_damaging(0.918) TCGA-2W-A8YY-01 9 132481566 132481566 C T PRRX2 Missense_Mutation p.R106W 0.42 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 132630355 132630355 G A USP20 Silent p.T254T 0.52 TCGA-2W-A8YY-01 9 132640719 132640719 G A USP20 Missense_Mutation p.E838K 0.21 tolerated(0.09) benign(0.362) TCGA-2W-A8YY-01 9 132642542 132642542 G A USP20 Missense_Mutation p.R912Q 0.45 deleterious_low_confidence(0) possibly_damaging(0.751) TCGA-2W-A8YY-01 9 132671224 132671224 G A FNBP1 Silent p.L414L 0.10 TCGA-2W-A8YY-01 9 132995814 132995814 C T NCS1 3'UTR 0.30 TCGA-2W-A8YY-01 9 132996075 132996075 A T NCS1 3'UTR 0.23 TCGA-2W-A8YY-01 9 133270671 133270671 G A AL354898.1 5'Flank 0.42 TCGA-2W-A8YY-01 9 133281397 133281397 G A AL354898.1 Missense_Mutation p.R249H 0.45 tolerated(0.28) benign(0.005) TCGA-2W-A8YY-01 9 133294265 133294265 G A HMCN2 Nonsense_Mutation p.W66* 0.40 TCGA-2W-A8YY-01 9 133308928 133308928 G A HMCN2 Missense_Mutation p.A740T 0.35 deleterious(0.03) possibly_damaging(0.697) TCGA-2W-A8YY-01 9 133327158 133327158 G T ASS1 5'UTR 0.52 TCGA-2W-A8YY-01 9 133370351 133370351 C T ASS1 Silent p.G356G 0.42 TCGA-2W-A8YY-01 9 133370382 133370382 C T ASS1 Silent p.L367L 0.24 TCGA-2W-A8YY-01 9 133493222 133493222 C T FUBP3 Silent p.G202G 0.32 TCGA-2W-A8YY-01 9 133512494 133512495 - T FUBP3 3'UTR 0.21 TCGA-2W-A8YY-01 9 133738155 133738155 C T ABL1 Silent p.Y204Y 0.19 TCGA-2W-A8YY-01 9 133748347 133748347 C T ABL1 Silent p.N355N 0.42 TCGA-2W-A8YY-01 9 133759406 133759406 C T ABL1 Nonsense_Mutation p.R596* 0.35 TCGA-2W-A8YY-01 9 133779237 133779237 C T FIBCD1 3'UTR 0.35 TCGA-2W-A8YY-01 9 133799739 133799739 G A FIBCD1 Silent p.S199S 0.38 TCGA-2W-A8YY-01 9 134001059 134001059 C T NUP214 5'UTR 0.40 TCGA-2W-A8YY-01 9 134026096 134026096 C T NUP214 Nonsense_Mutation p.R741* 0.48 TCGA-2W-A8YY-01 9 134183363 134183363 C T PPAPDC3 Missense_Mutation p.R169C 0.09 deleterious(0) probably_damaging(0.94) TCGA-2W-A8YY-01 9 134305484 134305484 G A PRRC2B 5'UTR 0.11 TCGA-2W-A8YY-01 9 134340315 134340315 G A PRRC2B Missense_Mutation p.A524T 0.24 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 134350191 134350191 G A PRRC2B Missense_Mutation p.R892Q 0.23 tolerated(0.21) benign(0.002) TCGA-2W-A8YY-01 9 134350924 134350924 C T PRRC2B Silent p.S1136S 0.12 TCGA-2W-A8YY-01 9 134350981 134350981 C T PRRC2B Silent p.N1155N 0.34 TCGA-2W-A8YY-01 9 134351581 134351581 C T PRRC2B Silent p.G1355G 0.29 TCGA-2W-A8YY-01 9 134358146 134358146 T C PRRC2B Missense_Mutation p.I1742T 0.41 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 134361485 134361485 G A PRRC2B Silent p.P1924P 0.41 TCGA-2W-A8YY-01 9 134395519 134395519 G A POMT1 Missense_Mutation p.S568N 0.22 tolerated(0.07) benign(0.097) TCGA-2W-A8YY-01 9 134397597 134397597 C T POMT1 Silent p.S685S 0.60 TCGA-2W-A8YY-01 9 134454751 134454751 G A RAPGEF1 3'UTR 0.33 TCGA-2W-A8YY-01 9 135073946 135073946 G T NTNG2 Missense_Mutation p.E269D 0.40 tolerated(0.55) benign(0.004) TCGA-2W-A8YY-01 9 135139114 135139114 C T SETX 3'UTR 0.36 TCGA-2W-A8YY-01 9 135202928 135202928 G A SETX Nonsense_Mutation p.Q1353* 0.12 TCGA-2W-A8YY-01 9 135206687 135206687 T C SETX Silent p.R329R 0.55 TCGA-2W-A8YY-01 9 135266163 135266163 G A TTF1 Silent p.V681V 0.47 TCGA-2W-A8YY-01 9 135276930 135276930 C T TTF1 Missense_Mutation p.A427T 0.35 tolerated(1) benign(0) TCGA-2W-A8YY-01 9 135513667 135513667 C T DDX31 Intron 0.19 TCGA-2W-A8YY-01 9 135513723 135513723 T G DDX31 Intron 0.39 TCGA-2W-A8YY-01 9 135521339 135521339 C T DDX31 Silent p.L546L 0.18 TCGA-2W-A8YY-01 9 135553957 135553957 T C GTF3C4 Silent p.F317F 0.50 TCGA-2W-A8YY-01 9 135554614 135554614 G A GTF3C4 Silent p.Q536Q 0.29 TCGA-2W-A8YY-01 9 135559079 135559079 C T GTF3C4 Missense_Mutation p.R772W 0.36 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 135781059 135781059 C T TSC1 Missense_Mutation p.E636K 0.37 deleterious(0.01) possibly_damaging(0.472) TCGA-2W-A8YY-01 9 135781219 135781219 A T TSC1 Silent p.T582T 0.47 TCGA-2W-A8YY-01 9 135804227 135804227 A G TSC1 Silent p.L11L 0.13 TCGA-2W-A8YY-01 9 135962226 135962226 C T CELP RNA 0.51 TCGA-2W-A8YY-01 9 135973852 135973852 G A RALGDS 3'UTR 0.49 TCGA-2W-A8YY-01 9 135983386 135983386 G A RALGDS Silent p.L396L 0.29 TCGA-2W-A8YY-01 9 136028869 136028869 A G GBGT1 3'UTR 0.29 TCGA-2W-A8YY-01 9 136131348 136131348 G A RP11-430N14.4 5'Flank 0.38 TCGA-2W-A8YY-01 9 136131467 136131467 G A RP11-430N14.4 5'Flank 0.50 TCGA-2W-A8YY-01 9 136199023 136199023 C A SURF6 Missense_Mutation p.Q256H 0.48 deleterious(0) benign(0.385) TCGA-2W-A8YY-01 9 136211177 136211177 G A MED22 Silent p.G72G 0.38 TCGA-2W-A8YY-01 9 136213502 136213502 C T MED22 Missense_Mutation p.A6T 0.33 tolerated(0.62) benign(0.013) TCGA-2W-A8YY-01 9 136217171 136217171 C T RPL7A Silent p.I164I 0.37 TCGA-2W-A8YY-01 9 136218170 136218170 C T RPL7A Silent p.I250I 0.20 TCGA-2W-A8YY-01 9 136221586 136221586 C T SURF1 Missense_Mutation p.R84Q 0.33 deleterious(0.01) probably_damaging(0.939) TCGA-2W-A8YY-01 9 136269060 136269060 G A C9orf96 Silent p.Q540Q 0.33 TCGA-2W-A8YY-01 9 136279920 136279920 C T REXO4 Missense_Mutation p.R146H 0.38 tolerated(0.21) benign(0.003) TCGA-2W-A8YY-01 9 136287546 136287546 G A ADAMTS13 5'UTR 0.29 TCGA-2W-A8YY-01 9 136295134 136295134 G A ADAMTS13 Silent p.Q300Q 0.33 TCGA-2W-A8YY-01 9 136307838 136307838 C A ADAMTS13 Silent p.A736A 0.21 TCGA-2W-A8YY-01 9 136315021 136315021 C T ADAMTS13 Silent p.T993T 0.08 TCGA-2W-A8YY-01 9 136333053 136333053 G A CACFD1 Missense_Mutation p.V111I 0.40 tolerated(0.71) benign(0.163) TCGA-2W-A8YY-01 9 136333104 136333104 G A CACFD1 Missense_Mutation p.A128T 0.14 tolerated(0.21) possibly_damaging(0.746) TCGA-2W-A8YY-01 9 136335447 136335447 C T CACFD1 3'Flank 0.24 TCGA-2W-A8YY-01 9 136338641 136338641 G A SLC2A6 Missense_Mutation p.A373V 0.47 tolerated(0.42) benign(0.002) TCGA-2W-A8YY-01 9 136340107 136340107 G T SLC2A6 Silent p.I301I 0.09 TCGA-2W-A8YY-01 9 136513027 136513027 G A DBH Missense_Mutation p.A362T 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-2W-A8YY-01 9 136531986 136531986 T C SARDH Silent p.V834V 0.32 TCGA-2W-A8YY-01 9 136570120 136570120 G A SARDH Missense_Mutation p.R502W 0.38 deleterious(0) possibly_damaging(0.88) TCGA-2W-A8YY-01 9 136627978 136627978 A C VAV2 3'UTR 0.36 TCGA-2W-A8YY-01 9 136634555 136634555 G A VAV2 Silent p.S806S 0.28 TCGA-2W-A8YY-01 9 136891815 136891815 G A BRD3 3'Flank 0.30 TCGA-2W-A8YY-01 9 136898105 136898105 G A BRD3 3'UTR 0.38 TCGA-2W-A8YY-01 9 136899885 136899885 A G BRD3 Missense_Mutation p.L668P 0.33 deleterious(0) probably_damaging(0.986) TCGA-2W-A8YY-01 9 137023059 137023059 G A WDR5 Missense_Mutation p.A317T 0.38 deleterious(0.03) possibly_damaging(0.515) TCGA-2W-A8YY-01 9 137328433 137328433 G A RXRA Missense_Mutation p.M454I 0.37 deleterious(0.02) probably_damaging(0.957) TCGA-2W-A8YY-01 9 137329005 137329005 G A RXRA 3'Flank 0.46 TCGA-2W-A8YY-01 9 137330312 137330312 G A RXRA 3'Flank 0.53 TCGA-2W-A8YY-01 9 137620579 137620579 G A COL5A1 Missense_Mutation p.E284K 0.35 possibly_damaging(0.546) TCGA-2W-A8YY-01 9 137623930 137623930 G A COL5A1 Missense_Mutation p.R449Q 0.37 possibly_damaging(0.895) TCGA-2W-A8YY-01 9 137642420 137642420 C T COL5A1 Silent p.A509A 0.09 TCGA-2W-A8YY-01 9 137681048 137681048 C T COL5A1 Silent p.G898G 0.27 TCGA-2W-A8YY-01 9 137710547 137710547 G A COL5A1 Missense_Mutation p.G1426S 0.49 unknown(0) TCGA-2W-A8YY-01 9 137717652 137717652 G A COL5A1 Missense_Mutation p.D1657N 0.48 unknown(0) TCGA-2W-A8YY-01 9 137734038 137734038 C T COL5A1 Silent p.I1802I 0.10 TCGA-2W-A8YY-01 9 137778355 137778355 C T FCN2 Silent p.A213A 0.31 TCGA-2W-A8YY-01 9 137779092 137779092 C T FCN2 Missense_Mutation p.A258V 0.43 deleterious(0.03) probably_damaging(0.934) TCGA-2W-A8YY-01 9 137809689 137809689 C T FCN1 Missense_Mutation p.R10Q 0.44 tolerated(0.55) benign(0.26) TCGA-2W-A8YY-01 9 137998681 137998681 G A OLFM1 Missense_Mutation p.A237T 0.42 tolerated(0.3) probably_damaging(0.948) TCGA-2W-A8YY-01 9 138377039 138377039 C T PPP1R26 Missense_Mutation p.A228V 0.44 tolerated(0.06) possibly_damaging(0.873) TCGA-2W-A8YY-01 9 138380535 138380535 C T PPP1R26 3'UTR 0.25 TCGA-2W-A8YY-01 9 138395642 138395642 C T MRPS2 Missense_Mutation p.P185L 0.35 deleterious(0.03) benign(0.309) TCGA-2W-A8YY-01 9 138395926 138395926 G A MRPS2 Missense_Mutation p.G280R 0.11 tolerated(0.41) benign(0.007) TCGA-2W-A8YY-01 9 138415759 138415759 C T LCN1 Missense_Mutation p.S109L 0.28 tolerated(0.22) benign(0.416) TCGA-2W-A8YY-01 9 138440495 138440495 C T OBP2A Intron 0.34 TCGA-2W-A8YY-01 9 138454738 138454738 C T PAEP Silent p.N103N 0.31 TCGA-2W-A8YY-01 9 138515877 138515877 C T GLT6D1 3'UTR 0.45 TCGA-2W-A8YY-01 9 138555174 138555174 C A LCN9 Missense_Mutation p.L3M 0.09 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-2W-A8YY-01 9 138594054 138594054 G A KCNT1 5'UTR 0.29 TCGA-2W-A8YY-01 9 138642802 138642802 C A KCNT1 Missense_Mutation p.L117M 0.43 tolerated(0.09) benign(0.18) TCGA-2W-A8YY-01 9 138677155 138677155 G A KCNT1 Splice_Site p.X1053_splice 0.38 TCGA-2W-A8YY-01 9 138714131 138714131 C T CAMSAP1 Silent p.S792S 0.20 TCGA-2W-A8YY-01 9 138905737 138905737 C T NACC2 Missense_Mutation p.R377Q 0.45 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 9 139008643 139008643 C T C9orf69 Missense_Mutation p.R35H 0.36 deleterious(0.01) possibly_damaging(0.793) TCGA-2W-A8YY-01 9 139235466 139235466 G A GPSM1 Intron 0.33 TCGA-2W-A8YY-01 9 139265316 139265316 G A CARD9 Missense_Mutation p.R202W 0.35 deleterious(0) possibly_damaging(0.696) TCGA-2W-A8YY-01 9 139272399 139272399 C T SNAPC4 Missense_Mutation p.V1294M 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 139282277 139282277 C A SNAPC4 Missense_Mutation p.D383Y 0.32 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 139296487 139296487 C T SDCCAG3 3'UTR 0.48 TCGA-2W-A8YY-01 9 139301668 139301668 C T SDCCAG3 Missense_Mutation p.A250T 0.11 tolerated(0.74) benign(0.001) TCGA-2W-A8YY-01 9 139312525 139312525 G A PMPCA Silent p.T318T 0.47 TCGA-2W-A8YY-01 9 139326317 139326317 G A INPP5E Missense_Mutation p.A503V 0.27 tolerated(0.17) benign(0.001) TCGA-2W-A8YY-01 9 139345856 139345856 G T SEC16A Missense_Mutation p.P2055H 0.32 tolerated(0.53) possibly_damaging(0.735) TCGA-2W-A8YY-01 9 139368674 139368674 C T SEC16A Missense_Mutation p.A1132T 0.46 deleterious(0.03) possibly_damaging(0.741) TCGA-2W-A8YY-01 9 139369016 139369016 C T SEC16A Missense_Mutation p.A1018T 0.40 tolerated(0.19) probably_damaging(0.998) TCGA-2W-A8YY-01 9 139369219 139369219 G T SEC16A Missense_Mutation p.A950D 0.29 tolerated(0.22) benign(0.211) TCGA-2W-A8YY-01 9 139370370 139370370 G A SEC16A Silent p.I566I 0.33 TCGA-2W-A8YY-01 9 139371602 139371602 G A SEC16A Missense_Mutation p.P156S 0.44 tolerated(0.43) benign(0.067) TCGA-2W-A8YY-01 9 139390480 139390480 G A NOTCH1 3'UTR 0.12 TCGA-2W-A8YY-01 9 139390515 139390515 C T NOTCH1 3'UTR 0.44 TCGA-2W-A8YY-01 9 139390791 139390791 G A NOTCH1 Missense_Mutation p.S2467L 0.45 tolerated(0.15) benign(0.148) TCGA-2W-A8YY-01 9 139390835 139390835 C T NOTCH1 Silent p.A2452A 0.44 TCGA-2W-A8YY-01 9 139391762 139391762 G A NOTCH1 Silent p.N2143N 0.40 TCGA-2W-A8YY-01 9 139391768 139391768 C T NOTCH1 Silent p.S2141S 0.39 TCGA-2W-A8YY-01 9 139399433 139399433 C T NOTCH1 Silent p.A1570A 0.39 TCGA-2W-A8YY-01 9 139400019 139400019 C T NOTCH1 Silent p.P1443P 0.27 TCGA-2W-A8YY-01 9 139401321 139401321 C T NOTCH1 Missense_Mutation p.G1250S 0.38 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 9 139404209 139404209 T C NOTCH1 Missense_Mutation p.N982S 0.36 tolerated(0.1) benign(0.014) TCGA-2W-A8YY-01 9 139410133 139410133 C T NOTCH1 Missense_Mutation p.E569K 0.33 deleterious(0.02) benign(0.371) TCGA-2W-A8YY-01 9 139566855 139566855 C T EGFL7 3'UTR 0.21 TCGA-2W-A8YY-01 9 139571429 139571429 C T AGPAT2 Missense_Mutation p.R159H 0.43 tolerated(0.53) benign(0.035) TCGA-2W-A8YY-01 9 139616435 139616435 T C FAM69B Silent p.H87H 0.34 TCGA-2W-A8YY-01 9 139616470 139616470 C T FAM69B Missense_Mutation p.P99L 0.49 tolerated(0.06) possibly_damaging(0.631) TCGA-2W-A8YY-01 9 139617634 139617634 C T FAM69B Missense_Mutation p.P235L 0.29 deleterious(0.01) probably_damaging(0.943) TCGA-2W-A8YY-01 9 139633968 139633968 C T LCN10 3'UTR 0.47 TCGA-2W-A8YY-01 9 139637316 139637316 G C LCN10 Missense_Mutation p.L14V 0.43 tolerated(0.29) possibly_damaging(0.567) TCGA-2W-A8YY-01 9 139641937 139641937 C T LCN6 Missense_Mutation p.V57M 0.27 deleterious(0.01) benign(0.339) TCGA-2W-A8YY-01 9 139650280 139650280 G A LCN8 Intron 0.08 TCGA-2W-A8YY-01 9 139716333 139716333 C T RABL6 Intron 0.29 TCGA-2W-A8YY-01 9 139716390 139716390 C T RABL6 Intron 0.20 TCGA-2W-A8YY-01 9 139723847 139723847 G A RABL6 Silent p.A123A 0.21 TCGA-2W-A8YY-01 9 139730292 139730292 C T RABL6 Silent p.Y269Y 0.40 TCGA-2W-A8YY-01 9 139744496 139744496 G A PHPT1 Missense_Mutation p.M64I 0.09 tolerated(0.48) benign(0.002) TCGA-2W-A8YY-01 9 139750534 139750534 C T MAMDC4 Silent p.P551P 0.36 TCGA-2W-A8YY-01 9 139815643 139815643 C T TRAF2 Missense_Mutation p.R372C 0.32 deleterious(0) benign(0.03) TCGA-2W-A8YY-01 9 139836818 139836818 C T FBXW5 Missense_Mutation p.R259H 0.24 tolerated(0.11) probably_damaging(0.985) TCGA-2W-A8YY-01 9 139837279 139837279 C T FBXW5 Silent p.S156S 0.51 TCGA-2W-A8YY-01 9 139872064 139872064 G C PTGDS Missense_Mutation p.A12P 0.42 deleterious(0.03) benign(0.306) TCGA-2W-A8YY-01 9 139877834 139877834 G A LCNL1 5'UTR 0.41 TCGA-2W-A8YY-01 9 139889948 139889948 T G CLIC3 Missense_Mutation p.K72T 0.49 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 9 139902373 139902373 C T ABCA2 3'UTR 0.48 TCGA-2W-A8YY-01 9 139903895 139903895 G A ABCA2 Silent p.L2252L 0.36 TCGA-2W-A8YY-01 9 139904546 139904546 C A ABCA2 Missense_Mutation p.Q2128H 0.32 deleterious(0) probably_damaging(0.917) TCGA-2W-A8YY-01 9 139906957 139906957 C T ABCA2 Missense_Mutation p.A1723T 0.42 tolerated(0.25) probably_damaging(0.985) TCGA-2W-A8YY-01 9 139907939 139907939 G A ABCA2 Silent p.Y1508Y 0.44 TCGA-2W-A8YY-01 9 139909404 139909404 G A ABCA2 Silent p.S1281S 0.39 TCGA-2W-A8YY-01 9 139910046 139910046 G A ABCA2 Missense_Mutation p.R1173C 0.53 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 9 139937565 139937565 G A NPDC1 Intron 0.31 TCGA-2W-A8YY-01 9 139972868 139972868 G A UAP1L1 Intron 0.35 TCGA-2W-A8YY-01 9 139994297 139994297 G A MAN1B1 Missense_Mutation p.A294T 0.45 deleterious(0) possibly_damaging(0.896) TCGA-2W-A8YY-01 9 139998170 139998170 G A MAN1B1 Intron 0.29 TCGA-2W-A8YY-01 9 140001169 140001169 G A MAN1B1 Missense_Mutation p.E492K 0.41 tolerated(0.23) benign(0.065) TCGA-2W-A8YY-01 9 140002004 140002004 C T MAN1B1 Silent p.L596L 0.52 TCGA-2W-A8YY-01 9 140005196 140005196 C T DPP7 Silent p.A461A 0.25 TCGA-2W-A8YY-01 9 140005369 140005369 C T DPP7 Missense_Mutation p.V436I 0.36 tolerated(1) benign(0.01) TCGA-2W-A8YY-01 9 140052877 140052877 G A GRIN1 Missense_Mutation p.E360K 0.36 tolerated(0.33) possibly_damaging(0.507) TCGA-2W-A8YY-01 9 140057132 140057132 G A GRIN1 Missense_Mutation p.A673T 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 140069868 140069868 G A ANAPC2 Missense_Mutation p.R693W 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 140110613 140110613 G A NDOR1 Missense_Mutation p.R550H 0.37 tolerated(0.25) benign(0.005) TCGA-2W-A8YY-01 9 140115623 140115623 C T RNF208 Silent p.P14P 0.24 TCGA-2W-A8YY-01 9 140120416 140120416 G A C9orf169 Missense_Mutation p.A115T 0.43 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-2W-A8YY-01 9 140120579 140120579 G A C9orf169 3'UTR 0.31 TCGA-2W-A8YY-01 9 140128124 140128124 G A SLC34A3 Missense_Mutation p.A266T 0.29 tolerated(0.21) benign(0.003) TCGA-2W-A8YY-01 9 140137531 140137531 C T TUBB4B Silent p.P287P 0.41 TCGA-2W-A8YY-01 9 140137745 140137745 C T TUBB4B Missense_Mutation p.R359W 0.43 deleterious_low_confidence(0.03) probably_damaging(0.916) TCGA-2W-A8YY-01 9 140147850 140147850 C A C9orf173 Missense_Mutation p.L366I 0.46 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-2W-A8YY-01 9 140158714 140158714 C T NELFB Silent p.D267D 0.50 TCGA-2W-A8YY-01 9 140173616 140173616 C T TOR4A Missense_Mutation p.R159C 0.44 deleterious(0) probably_damaging(0.953) TCGA-2W-A8YY-01 9 140175099 140175099 C T TOR4A 3'UTR 0.28 TCGA-2W-A8YY-01 9 140175411 140175411 G A TOR4A 3'UTR 0.40 TCGA-2W-A8YY-01 9 140175554 140175554 C T TOR4A 3'UTR 0.41 TCGA-2W-A8YY-01 9 140243727 140243727 G A EXD3 Silent p.D555D 0.48 TCGA-2W-A8YY-01 9 140245553 140245553 G A EXD3 Silent p.P477P 0.12 TCGA-2W-A8YY-01 9 140249181 140249181 G A EXD3 Missense_Mutation p.R268W 0.36 deleterious(0) possibly_damaging(0.65) TCGA-2W-A8YY-01 9 140267489 140267489 C T EXD3 Silent p.A110A 0.38 TCGA-2W-A8YY-01 9 140328422 140328422 C T NOXA1 Silent p.A395A 0.37 TCGA-2W-A8YY-01 9 140342733 140342733 C T NSMF 3'UTR 0.36 TCGA-2W-A8YY-01 9 140352282 140352282 G A NSMF Missense_Mutation p.R69C 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 140400156 140400156 C A PNPLA7 Missense_Mutation p.E461D 0.43 tolerated(0.6) benign(0.008) TCGA-2W-A8YY-01 9 140508613 140508613 G A ARRDC1 Missense_Mutation p.V189I 0.41 tolerated(1) benign(0.002) TCGA-2W-A8YY-01 9 140611603 140611603 G A EHMT1 Missense_Mutation p.R204H 0.45 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 140638362 140638362 G T EHMT1 Missense_Mutation p.K330N 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-2W-A8YY-01 9 140657193 140657193 G A EHMT1 Missense_Mutation p.R523Q 0.32 tolerated(0.07) benign(0.432) TCGA-2W-A8YY-01 9 140671094 140671094 G A EHMT1 Missense_Mutation p.E606K 0.20 tolerated(0.09) benign(0.381) TCGA-2W-A8YY-01 9 140707494 140707494 G T EHMT1 Missense_Mutation p.K968N 0.41 deleterious(0.01) probably_damaging(0.944) TCGA-2W-A8YY-01 9 140707887 140707887 G A EHMT1 Missense_Mutation p.V1029M 0.58 deleterious(0) possibly_damaging(0.719) TCGA-2W-A8YY-01 9 140708926 140708926 G A EHMT1 Missense_Mutation p.C1075Y 0.57 deleterious(0.01) probably_damaging(0.957) TCGA-2W-A8YY-01 9 140712560 140712560 A C EHMT1 Missense_Mutation p.E1170D 0.15 tolerated(1) benign(0.005) TCGA-2W-A8YY-01 9 140728827 140728827 G A EHMT1 Silent p.A1189A 0.29 TCGA-2W-A8YY-01 9 140729394 140729394 G A EHMT1 Missense_Mutation p.D1296N 0.75 tolerated_low_confidence(0.53) possibly_damaging(0.673) TCGA-2W-A8YY-01 9 140953568 140953568 A G CACNA1B Missense_Mutation p.K1504R 0.46 tolerated(0.18) benign(0.05) TCGA-2W-A8YY-01 9 140970314 140970314 G A CACNA1B Missense_Mutation p.R1634H 0.39 tolerated(0.28) possibly_damaging(0.681) TCGA-2W-A8YY-01 9 140995604 140995604 G A CACNA1B Intron 0.40 TCGA-2W-A8YY-01 9 141070115 141070115 C T TUBBP5 RNA 0.27 TCGA-2W-A8YY-01 9 14146801 14146801 C T NFIB Missense_Mutation p.R271K 0.43 deleterious(0.01) probably_damaging(0.963) TCGA-2W-A8YY-01 9 14307082 14307082 A G NFIB Silent p.H156H 0.58 TCGA-2W-A8YY-01 9 14722505 14722505 G A CER1 Silent p.L56L 0.33 TCGA-2W-A8YY-01 9 14737466 14737466 T C FREM1 Silent p.R2156R 0.28 TCGA-2W-A8YY-01 9 14851347 14851347 G A FREM1 Missense_Mutation p.L363F 0.53 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 15214143 15214143 C T TTC39B Missense_Mutation p.R159H 0.26 tolerated(0.18) possibly_damaging(0.833) TCGA-2W-A8YY-01 9 15307208 15307208 G A TTC39B Silent p.C38C 0.10 TCGA-2W-A8YY-01 9 15510225 15510225 C T PSIP1 5'UTR 0.38 TCGA-2W-A8YY-01 9 15874609 15874609 A T CCDC171 Missense_Mutation p.E1183V 0.40 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 16411556 16411556 T A BNC2 3'UTR 0.43 TCGA-2W-A8YY-01 9 16417637 16417637 A G BNC2 3'UTR 0.43 TCGA-2W-A8YY-01 9 16429970 16429970 G A BNC2 Intron 0.28 TCGA-2W-A8YY-01 9 17135323 17135323 G A CNTLN Missense_Mutation p.R87K 0.26 tolerated_low_confidence(0.93) benign(0.002) TCGA-2W-A8YY-01 9 17298351 17298351 G A CNTLN Splice_Site p.X382_splice 0.27 TCGA-2W-A8YY-01 9 17787410 17787410 C T SH3GL2 Missense_Mutation p.R122W 0.12 deleterious(0) probably_damaging(0.958) TCGA-2W-A8YY-01 9 18680528 18680528 C T ADAMTSL1 Intron 0.32 TCGA-2W-A8YY-01 9 18776822 18776822 C T ADAMTSL1 Silent p.A865A 0.32 TCGA-2W-A8YY-01 9 18817172 18817172 G A ADAMTSL1 Missense_Mutation p.D1291N 0.54 tolerated(0.51) probably_damaging(0.962) TCGA-2W-A8YY-01 9 19126400 19126400 G A PLIN2 Nonsense_Mutation p.Q9* 0.11 TCGA-2W-A8YY-01 9 19316732 19316732 C T DENND4C Missense_Mutation p.R568C 0.47 tolerated(0.14) probably_damaging(0.968) TCGA-2W-A8YY-01 9 19336369 19336369 G A DENND4C Silent p.P897P 0.53 TCGA-2W-A8YY-01 9 19376575 19376575 G A RPS6 Missense_Mutation p.R191C 0.58 tolerated(0.22) benign(0.009) TCGA-2W-A8YY-01 9 2073622 2073622 A G SMARCA2 Missense_Mutation p.E645G 0.11 benign(0.403) TCGA-2W-A8YY-01 9 2081971 2081971 C T SMARCA2 Missense_Mutation p.P775L 0.42 benign(0.031) TCGA-2W-A8YY-01 9 2086855 2086855 C T SMARCA2 Silent p.D851D 0.33 TCGA-2W-A8YY-01 9 20881877 20881877 G T FOCAD Missense_Mutation p.E775D 0.39 deleterious(0.04) probably_damaging(0.91) TCGA-2W-A8YY-01 9 21141929 21141929 A C IFNW1 5'UTR 0.22 TCGA-2W-A8YY-01 9 21216784 21216784 G A IFNA16 Missense_Mutation p.S174F 0.24 tolerated(0.06) benign(0.249) TCGA-2W-A8YY-01 9 21305028 21305028 G A IFNA5 Silent p.A76A 0.37 TCGA-2W-A8YY-01 9 21409421 21409421 G T IFNA8 Missense_Mutation p.E82D 0.12 tolerated(0.07) benign(0.113) TCGA-2W-A8YY-01 9 21409713 21409713 A C IFNA8 Missense_Mutation p.N180H 0.09 tolerated(0.07) benign(0.057) TCGA-2W-A8YY-01 9 21482031 21482031 C T IFNE 5'UTR 0.35 TCGA-2W-A8YY-01 9 21482073 21482073 C A IFNE 5'UTR 0.30 TCGA-2W-A8YY-01 9 2158968 2158968 G T SMARCA2 Intron 0.11 TCGA-2W-A8YY-01 9 2193370 2193371 - A SMARCA2 3'UTR 0.38 TCGA-2W-A8YY-01 9 21968234 21968234 G A CDKN2A 3'UTR 0.47 TCGA-2W-A8YY-01 9 21970963 21970963 G A CDKN2A Missense_Mutation p.A132V 0.42 tolerated(0.07) benign(0.032) TCGA-2W-A8YY-01 9 23690167 23690167 G T ELAVL2 3'UTR 0.56 TCGA-2W-A8YY-01 9 23691903 23691903 T - ELAVL2 3'UTR 0.33 TCGA-2W-A8YY-01 9 23704955 23704955 G A ELAVL2 Missense_Mutation p.R150C 0.34 deleterious(0) possibly_damaging(0.85) TCGA-2W-A8YY-01 9 25678754 25678754 G A TUSC1 5'UTR 0.29 TCGA-2W-A8YY-01 9 2647580 2647580 G T VLDLR Nonsense_Mutation p.G604* 0.39 TCGA-2W-A8YY-01 9 2650501 2650501 G A VLDLR Missense_Mutation p.G746S 0.09 tolerated(0.27) benign(0.371) TCGA-2W-A8YY-01 9 2652850 2652850 C T VLDLR Silent p.S829S 0.38 TCGA-2W-A8YY-01 9 26926514 26926514 C A PLAA Nonsense_Mutation p.E204* 0.37 TCGA-2W-A8YY-01 9 26993501 26993501 T C LRRC19 3'UTR 0.48 TCGA-2W-A8YY-01 9 26996393 26996393 C T LRRC19 Missense_Mutation p.V234I 0.37 tolerated(1) benign(0) TCGA-2W-A8YY-01 9 2717658 2717658 C T KCNV2 5'UTR 0.47 TCGA-2W-A8YY-01 9 27329591 27329591 G A MOB3B 3'UTR 0.35 TCGA-2W-A8YY-01 9 27359147 27359147 T C MOB3B Missense_Mutation p.H169R 0.27 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 27548560 27548560 G A C9orf72 Silent p.D418D 0.39 TCGA-2W-A8YY-01 9 27949236 27949236 G A LINGO2 Silent p.S478S 0.26 TCGA-2W-A8YY-01 9 27950401 27950401 T C LINGO2 Missense_Mutation p.D90G 0.46 tolerated(0.14) benign(0.01) TCGA-2W-A8YY-01 9 312082 312082 C T DOCK8 Silent p.A219A 0.40 TCGA-2W-A8YY-01 9 312113 312113 C T DOCK8 Missense_Mutation p.R230W 0.26 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 32423410 32423410 T C ACO1 Missense_Mutation p.F355S 0.36 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 9 32488108 32488108 C A DDX58 Missense_Mutation p.Q349H 0.27 deleterious(0.05) probably_damaging(0.973) TCGA-2W-A8YY-01 9 32542824 32542824 A G TOPORS Missense_Mutation p.S567P 0.44 tolerated(0.11) possibly_damaging(0.899) TCGA-2W-A8YY-01 9 32543329 32543329 C G TOPORS Missense_Mutation p.E398D 0.24 tolerated(0.08) possibly_damaging(0.899) TCGA-2W-A8YY-01 9 32543902 32543902 C T TOPORS Silent p.P207P 0.43 TCGA-2W-A8YY-01 9 32630161 32630161 C T TAF1L Missense_Mutation p.R1806K 0.52 tolerated_low_confidence(0.12) benign(0.284) TCGA-2W-A8YY-01 9 32635283 32635283 A G TAF1L Missense_Mutation p.W99R 0.46 tolerated(0.08) probably_damaging(0.961) TCGA-2W-A8YY-01 9 32635601 32635601 G A TAF1L 5'UTR 0.34 TCGA-2W-A8YY-01 9 32987564 32987564 C T APTX Missense_Mutation p.G154E 0.20 tolerated(0.44) benign(0.002) TCGA-2W-A8YY-01 9 32989843 32989843 C T APTX Missense_Mutation p.R16Q 0.37 tolerated(0.09) possibly_damaging(0.49) TCGA-2W-A8YY-01 9 33038827 33038827 C T DNAJA1 Missense_Mutation p.R374C 0.20 deleterious(0.04) benign(0) TCGA-2W-A8YY-01 9 33344096 33344096 G A NFX1 Missense_Mutation p.A752T 0.43 tolerated(0.58) benign(0.019) TCGA-2W-A8YY-01 9 33351653 33351653 C A NFX1 Silent p.L840L 0.56 TCGA-2W-A8YY-01 9 33366632 33366632 G A NFX1 Silent p.K1015K 0.40 TCGA-2W-A8YY-01 9 33366747 33366747 C T NFX1 Missense_Mutation p.R1054C 0.34 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 33401236 33401236 G A AQP7 Missense_Mutation p.R9W 0.42 deleterious(0.02) benign(0.006) TCGA-2W-A8YY-01 9 33441180 33441180 T - AQP3 3'UTR 0.35 TCGA-2W-A8YY-01 9 33463044 33463044 G A NOL6 Missense_Mutation p.P1093L 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 9 3346692 3346692 C T RFX3 Missense_Mutation p.D64N 0.39 deleterious(0.05) benign(0.052) TCGA-2W-A8YY-01 9 33467248 33467248 G A NOL6 Missense_Mutation p.R580C 0.31 deleterious(0.03) possibly_damaging(0.584) TCGA-2W-A8YY-01 9 33923475 33923475 A G UBAP2 Missense_Mutation p.V933A 0.29 deleterious(0) unknown(0) TCGA-2W-A8YY-01 9 33924227 33924227 C T UBAP2 Missense_Mutation p.S856N 0.39 tolerated(0.11) unknown(0) TCGA-2W-A8YY-01 9 34107392 34107392 G A DCAF12 Nonsense_Mutation p.R169* 0.35 TCGA-2W-A8YY-01 9 34125153 34125153 C T DCAF12 Silent p.L67L 0.13 TCGA-2W-A8YY-01 9 34241424 34241424 G A UBAP1 Missense_Mutation p.R198Q 0.50 tolerated(0.09) possibly_damaging(0.543) TCGA-2W-A8YY-01 9 34254386 34254386 G A KIF24 Missense_Mutation p.P1367S 0.31 tolerated(0.48) benign(0.002) TCGA-2W-A8YY-01 9 34257052 34257052 G A KIF24 Silent p.S851S 0.40 TCGA-2W-A8YY-01 9 34257203 34257203 G A KIF24 Missense_Mutation p.T801M 0.44 deleterious(0.01) benign(0.321) TCGA-2W-A8YY-01 9 34257930 34257930 G A KIF24 Nonsense_Mutation p.R559* 0.46 TCGA-2W-A8YY-01 9 34370736 34370736 C T KIAA1161 3'UTR 0.41 TCGA-2W-A8YY-01 9 34371379 34371379 G A KIAA1161 Silent p.R487R 0.32 TCGA-2W-A8YY-01 9 34371975 34371975 G T KIAA1161 Missense_Mutation p.L289M 0.50 tolerated(0.18) probably_damaging(0.98) TCGA-2W-A8YY-01 9 34610776 34610776 G A RPP25L 3'UTR 0.37 TCGA-2W-A8YY-01 9 34627880 34627880 G A ARID3C Silent p.A44A 0.33 TCGA-2W-A8YY-01 9 34635085 34635085 A G SIGMAR1 3'UTR 0.10 TCGA-2W-A8YY-01 9 34635747 34635747 G A SIGMAR1 Missense_Mutation p.A185V 0.33 tolerated(0.14) possibly_damaging(0.572) TCGA-2W-A8YY-01 9 34647504 34647504 G A GALT Missense_Mutation p.D90N 0.12 tolerated(0.12) benign(0.013) TCGA-2W-A8YY-01 9 34723726 34723726 A C FAM205A Missense_Mutation p.F1171V 0.22 tolerated(0.15) benign(0.098) TCGA-2W-A8YY-01 9 34723818 34723818 T C FAM205A Missense_Mutation p.D1140G 0.31 tolerated(0.24) benign(0.06) TCGA-2W-A8YY-01 9 34724305 34724305 G A FAM205A Nonsense_Mutation p.Q978* 0.43 TCGA-2W-A8YY-01 9 34971523 34971523 C T KIAA1045 Silent p.R76R 0.21 TCGA-2W-A8YY-01 9 34971542 34971542 C T KIAA1045 Nonsense_Mutation p.R83* 0.09 TCGA-2W-A8YY-01 9 34972493 34972493 G A KIAA1045 Missense_Mutation p.A177T 0.56 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 34996699 34996699 C T DNAJB5 Missense_Mutation p.R331C 0.32 deleterious(0) probably_damaging(0.939) TCGA-2W-A8YY-01 9 35044224 35044224 G A C9orf131 Missense_Mutation p.G533E 0.42 tolerated(0.05) benign(0.051) TCGA-2W-A8YY-01 9 35056917 35056917 G A VCP 3'UTR 0.28 TCGA-2W-A8YY-01 9 35061100 35061100 C T VCP Missense_Mutation p.R424H 0.42 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 9 35094001 35094001 C T PIGO Missense_Mutation p.V226M 0.41 deleterious(0.04) benign(0.316) TCGA-2W-A8YY-01 9 35102686 35102686 C T STOML2 Silent p.E60E 0.37 TCGA-2W-A8YY-01 9 35376175 35376175 C T UNC13B Missense_Mutation p.R507C 0.39 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 35403895 35403895 C T UNC13B Silent p.P1547P 0.47 TCGA-2W-A8YY-01 9 35555174 35555174 G T RUSC2 Missense_Mutation p.R711L 0.50 deleterious(0.01) benign(0.187) TCGA-2W-A8YY-01 9 35555426 35555426 C T RUSC2 Missense_Mutation p.S795F 0.40 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 9 35618326 35618326 C T CD72 5'UTR 0.24 TCGA-2W-A8YY-01 9 35660719 35660719 G T CCDC107 Intron 0.31 TCGA-2W-A8YY-01 9 35660980 35660980 C T CCDC107 Silent p.D216D 0.31 TCGA-2W-A8YY-01 9 35661124 35661124 C T CCDC107 Silent p.S264S 0.31 TCGA-2W-A8YY-01 9 35677844 35677844 G A CA9 Missense_Mutation p.A300T 0.30 tolerated(0.69) benign(0.046) TCGA-2W-A8YY-01 9 35697715 35697715 G A TLN1 3'UTR 0.24 TCGA-2W-A8YY-01 9 35715139 35715139 G A TLN1 Missense_Mutation p.R891W 0.56 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 9 35717209 35717209 A G TLN1 Missense_Mutation p.Y798H 0.41 tolerated(0.31) benign(0.002) TCGA-2W-A8YY-01 9 35736523 35736523 G A CREB3 Missense_Mutation p.G306S 0.32 tolerated(0.39) benign(0.128) TCGA-2W-A8YY-01 9 35739071 35739071 G A GBA2 Missense_Mutation p.R575W 0.20 tolerated(0.1) benign(0.069) TCGA-2W-A8YY-01 9 35752813 35752813 G A RGP1 Missense_Mutation p.S373N 0.26 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 9 35754020 35754020 C T MSMP Missense_Mutation p.S36N 0.31 deleterious(0.04) benign(0.037) TCGA-2W-A8YY-01 9 35802215 35802215 G A NPR2 Missense_Mutation p.A549T 0.18 deleterious(0) possibly_damaging(0.879) TCGA-2W-A8YY-01 9 35807031 35807031 A C NPR2 Missense_Mutation p.E844A 0.23 tolerated(0.12) benign(0.175) TCGA-2W-A8YY-01 9 35834649 35834649 T C TMEM8B Splice_Site 0.45 TCGA-2W-A8YY-01 9 35957488 35957488 G A OR2S2 Missense_Mutation p.T203M 0.42 deleterious(0) possibly_damaging(0.87) TCGA-2W-A8YY-01 9 35957499 35957499 G A OR2S2 Silent p.S199S 0.34 TCGA-2W-A8YY-01 9 36083377 36083377 G A RECK Missense_Mutation p.C152Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 36169406 36169406 G A CCIN 5'UTR 0.41 TCGA-2W-A8YY-01 9 36190984 36190984 C T CLTA 5'UTR 0.34 TCGA-2W-A8YY-01 9 36198991 36198991 A C CLTA Missense_Mutation p.T91P 0.44 tolerated(0.06) benign(0.031) TCGA-2W-A8YY-01 9 36218226 36218226 T G GNE Missense_Mutation p.Q660H 0.42 deleterious_low_confidence(0.05) possibly_damaging(0.456) TCGA-2W-A8YY-01 9 36229085 36229085 G A GNE Missense_Mutation p.R366W 0.45 deleterious(0) probably_damaging(0.981) TCGA-2W-A8YY-01 9 36342420 36342420 A G RNF38 Missense_Mutation p.C463R 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 36353219 36353219 G A RNF38 Missense_Mutation p.P340L 0.43 deleterious(0) probably_damaging(0.964) TCGA-2W-A8YY-01 9 36376034 36376034 G A RNF38 Nonsense_Mutation p.R85* 0.12 TCGA-2W-A8YY-01 9 36633156 36633156 C T MELK Nonsense_Mutation p.Q265* 0.28 TCGA-2W-A8YY-01 9 36669403 36669403 G A MELK Missense_Mutation p.R502Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 37020774 37020774 C T PAX5 Missense_Mutation p.G24E 0.35 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 37440758 37440758 C A ZBTB5 Missense_Mutation p.K597N 0.41 deleterious(0) probably_damaging(0.917) TCGA-2W-A8YY-01 9 37441807 37441807 C T ZBTB5 Missense_Mutation p.G248R 0.21 deleterious_low_confidence(0.01) benign(0.109) TCGA-2W-A8YY-01 9 37486150 37486150 C T POLR1E Intron 0.33 TCGA-2W-A8YY-01 9 37512600 37512600 C T FBXO10 Missense_Mutation p.A939T 0.28 tolerated(0.51) benign(0.07) TCGA-2W-A8YY-01 9 37522930 37522930 G A FBXO10 Missense_Mutation p.R608C 0.38 deleterious(0.04) probably_damaging(0.964) TCGA-2W-A8YY-01 9 37744832 37744832 G A FRMPD1 Missense_Mutation p.D935N 0.49 deleterious(0.02) probably_damaging(0.993) TCGA-2W-A8YY-01 9 37746696 37746696 G A FRMPD1 Missense_Mutation p.R1556H 0.49 deleterious(0.03) benign(0.099) TCGA-2W-A8YY-01 9 37948704 37948704 C T SHB Missense_Mutation p.R425Q 0.25 tolerated(0.13) probably_damaging(0.952) TCGA-2W-A8YY-01 9 38396631 38396631 G A ALDH1B1 Missense_Mutation p.A296T 0.27 deleterious(0.04) probably_damaging(0.995) TCGA-2W-A8YY-01 9 38398080 38398080 G A ALDH1B1 3'UTR 0.36 TCGA-2W-A8YY-01 9 38572029 38572029 C T ANKRD18A 3'UTR 0.40 TCGA-2W-A8YY-01 9 38595737 38595737 G A ANKRD18A Nonsense_Mutation p.Q534* 0.47 TCGA-2W-A8YY-01 9 39088429 39088429 C T CNTNAP3 Missense_Mutation p.A1071T 0.42 tolerated(0.47) benign(0.376) TCGA-2W-A8YY-01 9 39144315 39144315 C T CNTNAP3 Missense_Mutation p.G560S 0.30 deleterious(0.04) benign(0.333) TCGA-2W-A8YY-01 9 39166012 39166012 C A CNTNAP3 Missense_Mutation p.M465I 0.31 tolerated(0.46) benign(0.004) TCGA-2W-A8YY-01 9 39171514 39171514 A C CNTNAP3 Silent p.T395T 0.19 TCGA-2W-A8YY-01 9 399159 399159 C T DOCK8 Missense_Mutation p.A1045V 0.42 tolerated(0.34) probably_damaging(0.95) TCGA-2W-A8YY-01 9 40702660 40702660 G A SPATA31A3 Missense_Mutation p.G106E 0.62 tolerated(0.14) benign(0.002) TCGA-2W-A8YY-01 9 40706015 40706015 C T SPATA31A3 Silent p.C1224C 0.45 TCGA-2W-A8YY-01 9 40772896 40772896 T C ZNF658 Silent p.T793T 0.12 TCGA-2W-A8YY-01 9 41962681 41962681 C T RP11-204M4.2 RNA 0.10 TCGA-2W-A8YY-01 9 42472117 42472117 C T FAM95B1 RNA 0.16 TCGA-2W-A8YY-01 9 42472158 42472158 G A FAM95B1 RNA 0.31 TCGA-2W-A8YY-01 9 4286213 4286213 C T GLIS3 Silent p.Q71Q 0.31 TCGA-2W-A8YY-01 9 43626189 43626189 G A SPATA31A6 Missense_Mutation p.T833M 0.81 tolerated(0.11) possibly_damaging(0.847) TCGA-2W-A8YY-01 9 43885069 43885069 G A CNTNAP3B Missense_Mutation p.D788N 0.64 deleterious(0.02) possibly_damaging(0.677) TCGA-2W-A8YY-01 9 452051 452051 C T DOCK8 Missense_Mutation p.P2001L 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 4663946 4663946 G T PPAPDC2 3'UTR 0.42 TCGA-2W-A8YY-01 9 5339742 5339742 G T RLN1 Missense_Mutation p.P2H 0.20 tolerated(0.17) probably_damaging(0.996) TCGA-2W-A8YY-01 9 5361761 5361761 G A PLGRKT Missense_Mutation p.A70V 0.32 tolerated(0.44) benign(0.032) TCGA-2W-A8YY-01 9 5629401 5629401 G A KIAA1432 Missense_Mutation p.R31K 0.36 tolerated(0.46) benign(0.12) TCGA-2W-A8YY-01 9 5763384 5763384 C A KIAA1432 Missense_Mutation p.A786D 0.47 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 5920372 5920372 T C KIAA2026 Missense_Mutation p.K1875R 0.30 tolerated(0.05) benign(0.263) TCGA-2W-A8YY-01 9 5922334 5922334 G A KIAA2026 Missense_Mutation p.S1221F 0.48 deleterious(0.03) benign(0.277) TCGA-2W-A8YY-01 9 5922623 5922623 G A KIAA2026 Missense_Mutation p.P1125S 0.33 tolerated(0.55) benign(0.04) TCGA-2W-A8YY-01 9 5968161 5968162 - T KIAA2026 Frame_Shift_Ins p.K691Efs*8 0.22 TCGA-2W-A8YY-01 9 6007330 6007330 C - KIAA2026 Frame_Shift_Del p.G153Afs*11 0.24 TCGA-2W-A8YY-01 9 6413616 6413616 C T UHRF2 Silent p.C42C 0.24 TCGA-2W-A8YY-01 9 6434170 6434170 A G UHRF2 Missense_Mutation p.D214G 0.29 deleterious(0.04) probably_damaging(0.996) TCGA-2W-A8YY-01 9 6493825 6493825 G T UHRF2 Splice_Site p.X500_splice 0.17 TCGA-2W-A8YY-01 9 6506166 6506166 G A UHRF2 Missense_Mutation p.S799N 0.35 tolerated(0.62) probably_damaging(0.914) TCGA-2W-A8YY-01 9 6532625 6532625 C T GLDC 3'UTR 0.09 TCGA-2W-A8YY-01 9 65506253 65506253 C T SPATA31A7 Missense_Mutation p.R436K 0.47 tolerated(0.13) benign(0.031) TCGA-2W-A8YY-01 9 6558582 6558582 C T GLDC Missense_Mutation p.D677N 0.35 tolerated(0.13) probably_damaging(1) TCGA-2W-A8YY-01 9 6605140 6605140 A G GLDC Silent p.H284H 0.42 TCGA-2W-A8YY-01 9 66554572 66554572 G A RP11-262H14.4 RNA 0.16 TCGA-2W-A8YY-01 9 67785252 67785252 A G FAM27E3 3'UTR 0.36 TCGA-2W-A8YY-01 9 67968513 67968513 C T ANKRD20A1 Missense_Mutation p.A691V 0.34 tolerated(0.99) possibly_damaging(0.739) TCGA-2W-A8YY-01 9 69380488 69380488 C T CR769776.1 5'UTR 0.29 TCGA-2W-A8YY-01 9 69420337 69420337 T C ANKRD20A4 Silent p.S409S 0.21 TCGA-2W-A8YY-01 9 69420418 69420418 G A ANKRD20A4 Silent p.E436E 0.19 TCGA-2W-A8YY-01 9 70484247 70484247 C A CBWD5 Intron 0.19 TCGA-2W-A8YY-01 9 7049110 7049110 C T KDM4C Silent p.C778C 0.31 TCGA-2W-A8YY-01 9 7128167 7128167 G A KDM4C Silent p.S904S 0.37 TCGA-2W-A8YY-01 9 712998 712998 C T KANK1 Silent p.G744G 0.33 TCGA-2W-A8YY-01 9 71395621 71395621 C T FAM122A Nonsense_Mutation p.R181* 0.20 TCGA-2W-A8YY-01 9 71606165 71606165 G A PIP5K1B Missense_Mutation p.V538I 0.47 tolerated_low_confidence(0.23) benign(0.016) TCGA-2W-A8YY-01 9 71628409 71628409 G A PRKACG Silent p.C200C 0.44 TCGA-2W-A8YY-01 9 71628614 71628614 C T PRKACG Missense_Mutation p.R132H 0.35 tolerated(1) benign(0) TCGA-2W-A8YY-01 9 7174911 7174911 C T KDM4C 3'UTR 0.11 TCGA-2W-A8YY-01 9 71789123 71789123 G A TJP2 5'UTR 0.31 TCGA-2W-A8YY-01 9 71836232 71836232 G A TJP2 Missense_Mutation p.D289N 0.36 tolerated(0.07) benign(0.013) TCGA-2W-A8YY-01 9 72000805 72000805 C T FAM189A2 Silent p.L266L 0.38 TCGA-2W-A8YY-01 9 72045646 72045646 G A APBA1 3'UTR 0.37 TCGA-2W-A8YY-01 9 72046231 72046231 G A APBA1 3'UTR 0.33 TCGA-2W-A8YY-01 9 72082834 72082834 C T APBA1 Missense_Mutation p.A463T 0.41 deleterious(0) possibly_damaging(0.907) TCGA-2W-A8YY-01 9 72333318 72333318 G A PTAR1 Silent p.N383N 0.25 TCGA-2W-A8YY-01 9 72833513 72833513 G A MAMDC2 Splice_Site p.X637_splice 0.45 TCGA-2W-A8YY-01 9 72915049 72915049 C A SMC5 Missense_Mutation p.A466D 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 72999582 72999582 G T KLF9 3'UTR 0.33 TCGA-2W-A8YY-01 9 73027990 73027990 C A KLF9 Missense_Mutation p.S97I 0.54 tolerated(0.13) possibly_damaging(0.557) TCGA-2W-A8YY-01 9 73028790 73028790 G T KLF9 5'UTR 0.16 TCGA-2W-A8YY-01 9 73028923 73028923 C T KLF9 5'UTR 0.38 TCGA-2W-A8YY-01 9 73150852 73150852 G A TRPM3 3'UTR 0.31 TCGA-2W-A8YY-01 9 73167809 73167809 G A TRPM3 Silent p.C1163C 0.27 TCGA-2W-A8YY-01 9 73205965 73205965 A C TRPM3 Missense_Mutation p.F1057V 0.48 deleterious(0.01) possibly_damaging(0.893) TCGA-2W-A8YY-01 9 73255521 73255521 G A TRPM3 Silent p.V467V 0.37 TCGA-2W-A8YY-01 9 74300760 74300760 G A TMEM2 Missense_Mutation p.S1285F 0.34 deleterious(0.01) possibly_damaging(0.878) TCGA-2W-A8YY-01 9 74347361 74347361 C T TMEM2 Missense_Mutation p.R490Q 0.45 deleterious(0.03) benign(0.16) TCGA-2W-A8YY-01 9 74361174 74361174 C A TMEM2 Missense_Mutation p.D139Y 0.30 tolerated(0.07) benign(0.014) TCGA-2W-A8YY-01 9 74674262 74674262 C T C9orf57 Missense_Mutation p.G18S 0.29 tolerated_low_confidence(0.34) benign(0.045) TCGA-2W-A8YY-01 9 74842931 74842931 G A GDA Missense_Mutation p.A299T 0.30 tolerated(0.19) benign(0.239) TCGA-2W-A8YY-01 9 74860174 74860174 T - GDA Frame_Shift_Del p.F417Lfs*15 0.20 TCGA-2W-A8YY-01 9 75445544 75445544 T C TMC1 Intron 0.43 TCGA-2W-A8YY-01 9 75516105 75516105 C A ALDH1A1 3'UTR 0.36 TCGA-2W-A8YY-01 9 75775209 75775209 A G ANXA1 Missense_Mutation p.T101A 0.38 deleterious(0.04) benign(0.015) TCGA-2W-A8YY-01 9 77339436 77339436 G A TRPM6 3'UTR 0.26 TCGA-2W-A8YY-01 9 77377255 77377255 C A TRPM6 Missense_Mutation p.K1444N 0.38 tolerated_low_confidence(0.37) benign(0.001) TCGA-2W-A8YY-01 9 77397750 77397750 A C TRPM6 Missense_Mutation p.I980S 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 77457245 77457245 C T TRPM6 Missense_Mutation p.R56Q 0.13 tolerated(0.12) benign(0.228) TCGA-2W-A8YY-01 9 77473623 77473623 T G TRPM6 Missense_Mutation p.E25D 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-2W-A8YY-01 9 77562909 77562909 T C C9orf40 3'UTR 0.28 TCGA-2W-A8YY-01 9 77614647 77614647 T C C9orf41 Missense_Mutation p.R244G 0.34 tolerated(0.06) benign(0.063) TCGA-2W-A8YY-01 9 77614729 77614729 C T C9orf41 Nonsense_Mutation p.W216* 0.44 TCGA-2W-A8YY-01 9 77631312 77631312 G A C9orf41 Silent p.D154D 0.37 TCGA-2W-A8YY-01 9 77693264 77693264 G A NMRK1 Intron 0.28 TCGA-2W-A8YY-01 9 79119138 79119138 T C GCNT1 3'UTR 0.36 TCGA-2W-A8YY-01 9 79121048 79121048 C A GCNT1 3'UTR 0.35 TCGA-2W-A8YY-01 9 79318531 79318531 G A PRUNE2 Silent p.L2666L 0.29 TCGA-2W-A8YY-01 9 79320026 79320026 C T PRUNE2 Silent p.S2388S 0.43 TCGA-2W-A8YY-01 9 79321214 79321214 A G PRUNE2 Silent p.G1992G 0.40 TCGA-2W-A8YY-01 9 79323949 79323949 C T PRUNE2 Missense_Mutation p.D1081N 0.30 tolerated(0.41) benign(0.119) TCGA-2W-A8YY-01 9 79520882 79520882 C T PRUNE2 5'UTR 0.38 TCGA-2W-A8YY-01 9 79865018 79865018 G A VPS13A Silent p.T681T 0.44 TCGA-2W-A8YY-01 9 79922930 79922930 G T VPS13A Missense_Mutation p.D1344Y 0.35 deleterious(0.01) benign(0.396) TCGA-2W-A8YY-01 9 80040578 80040578 C T GNA14 Nonsense_Mutation p.W259* 0.34 TCGA-2W-A8YY-01 9 80866877 80866877 G A CEP78 Missense_Mutation p.E376K 0.35 tolerated(0.13) benign(0.218) TCGA-2W-A8YY-01 9 80879170 80879170 G A CEP78 Silent p.L522L 0.36 TCGA-2W-A8YY-01 9 80881536 80881536 C T CEP78 Missense_Mutation p.A676V 0.26 tolerated_low_confidence(0.59) benign(0.001) TCGA-2W-A8YY-01 9 82333707 82333707 G A TLE4 Missense_Mutation p.G471R 0.43 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 9 82340442 82340442 C - TLE4 3'Flank 0.30 TCGA-2W-A8YY-01 9 82340449 82340449 T - TLE4 3'Flank 0.28 TCGA-2W-A8YY-01 9 8315560 8315560 A C PTPRD 3'UTR 0.31 TCGA-2W-A8YY-01 9 8316414 8316414 A G PTPRD 3'UTR 0.31 TCGA-2W-A8YY-01 9 84198957 84198957 C T TLE1 3'UTR 0.35 TCGA-2W-A8YY-01 9 84225134 84225134 C T TLE1 Splice_Site p.X444_splice 0.38 TCGA-2W-A8YY-01 9 84533090 84533090 G A SPATA31D5P RNA 0.48 TCGA-2W-A8YY-01 9 84533358 84533358 G A SPATA31D5P RNA 0.44 TCGA-2W-A8YY-01 9 84547688 84547688 G A RP11-383M4.6 Intron 0.32 TCGA-2W-A8YY-01 9 84608674 84608674 G A SPATA31D1 Missense_Mutation p.V1097I 0.34 tolerated(1) benign(0.001) TCGA-2W-A8YY-01 9 847137 847137 G A DMRT1 Missense_Mutation p.A178T 0.28 tolerated(0.16) benign(0.1) TCGA-2W-A8YY-01 9 8528309 8528309 G A PTPRD Intron 0.50 TCGA-2W-A8YY-01 9 85597654 85597654 T G RASEF Missense_Mutation p.T721P 0.38 tolerated(0.11) possibly_damaging(0.776) TCGA-2W-A8YY-01 9 85616026 85616026 C T RASEF Missense_Mutation p.V408M 0.18 tolerated(0.53) benign(0.019) TCGA-2W-A8YY-01 9 86275246 86275246 A G UBQLN1 3'UTR 0.39 TCGA-2W-A8YY-01 9 86276298 86276298 C T UBQLN1 3'UTR 0.31 TCGA-2W-A8YY-01 9 86276745 86276745 A G UBQLN1 Missense_Mutation p.I576T 0.22 deleterious(0.05) probably_damaging(0.99) TCGA-2W-A8YY-01 9 86279959 86279959 C T UBQLN1 Silent p.P478P 0.39 TCGA-2W-A8YY-01 9 86518872 86518872 C A KIF27 Missense_Mutation p.E187D 0.30 deleterious(0.03) possibly_damaging(0.483) TCGA-2W-A8YY-01 9 86571341 86571341 G A C9orf64 Silent p.S25S 0.36 TCGA-2W-A8YY-01 9 86571416 86571416 T G C9orf64 5'UTR 0.22 TCGA-2W-A8YY-01 9 86905168 86905168 T C SLC28A3 Silent p.P350P 0.11 TCGA-2W-A8YY-01 9 87317111 87317111 G A NTRK2 Missense_Mutation p.E84K 0.40 tolerated(0.69) benign(0.294) TCGA-2W-A8YY-01 9 88272486 88272486 C T AGTPBP1 Missense_Mutation p.R258H 0.38 tolerated(0.2) benign(0.139) TCGA-2W-A8YY-01 9 88655668 88655668 C T GOLM1 Missense_Mutation p.D195N 0.46 tolerated(0.45) probably_damaging(0.913) TCGA-2W-A8YY-01 9 88661477 88661477 C A GOLM1 Missense_Mutation p.K125N 0.38 tolerated(0.16) possibly_damaging(0.895) TCGA-2W-A8YY-01 9 88694178 88694178 C T GOLM1 Missense_Mutation p.A20T 0.35 deleterious(0) probably_damaging(0.913) TCGA-2W-A8YY-01 9 88938216 88938216 T C ZCCHC6 Missense_Mutation p.T817A 0.32 tolerated(0.22) benign(0.04) TCGA-2W-A8YY-01 9 88952437 88952437 C T ZCCHC6 Missense_Mutation p.R451H 0.45 tolerated(0.36) benign(0.005) TCGA-2W-A8YY-01 9 88961224 88961224 C A ZCCHC6 Missense_Mutation p.R231M 0.44 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 9 88967811 88967811 G A ZCCHC6 Silent p.L102L 0.48 TCGA-2W-A8YY-01 9 90220038 90220038 A G DAPK1 Missense_Mutation p.T78A 0.09 tolerated(0.35) benign(0.002) TCGA-2W-A8YY-01 9 90255304 90255304 T G DAPK1 Missense_Mutation p.F241V 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 90296405 90296405 G A DAPK1 Silent p.S696S 0.32 TCGA-2W-A8YY-01 9 90318085 90318085 G A DAPK1 Missense_Mutation p.E1005K 0.55 deleterious(0.01) benign(0.089) TCGA-2W-A8YY-01 9 90321167 90321167 C T DAPK1 Missense_Mutation p.R1061W 0.46 deleterious(0.01) probably_damaging(0.952) TCGA-2W-A8YY-01 9 90321977 90321977 G A DAPK1 Missense_Mutation p.A1331T 0.30 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 9 90323501 90323501 T C DAPK1 3'UTR 0.24 TCGA-2W-A8YY-01 9 90500150 90500150 G A SPATA31E1 Missense_Mutation p.G250S 0.33 tolerated(0.95) benign(0.032) TCGA-2W-A8YY-01 9 90502949 90502949 C T SPATA31E1 Missense_Mutation p.P1183S 0.38 tolerated(0.08) possibly_damaging(0.674) TCGA-2W-A8YY-01 9 90585738 90585738 G A CDK20 Silent p.V151V 0.52 TCGA-2W-A8YY-01 9 90586234 90586234 G A CDK20 Missense_Mutation p.A69V 0.45 deleterious(0.01) possibly_damaging(0.646) TCGA-2W-A8YY-01 9 91077535 91077535 G A SPIN1 Missense_Mutation p.V76I 0.33 tolerated(0.24) benign(0.034) TCGA-2W-A8YY-01 9 91609302 91609302 G A C9orf47 3'UTR 0.33 TCGA-2W-A8YY-01 9 91609669 91609669 G T C9orf47 3'UTR 0.26 TCGA-2W-A8YY-01 9 91616512 91616512 G A S1PR3 Missense_Mutation p.A133T 0.48 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 9 91934688 91934688 T C SECISBP2 Missense_Mutation p.F53S 0.44 tolerated(0.06) benign(0.027) TCGA-2W-A8YY-01 9 91965665 91965665 C T SECISBP2 Missense_Mutation p.R671C 0.42 deleterious(0) possibly_damaging(0.903) TCGA-2W-A8YY-01 9 92003882 92003882 G A SEMA4D Silent p.D285D 0.31 TCGA-2W-A8YY-01 9 93375839 93375839 G A DIRAS2 Nonsense_Mutation p.R91* 0.29 TCGA-2W-A8YY-01 9 93624493 93624493 G A SYK Missense_Mutation p.R195Q 0.42 deleterious(0.02) possibly_damaging(0.727) TCGA-2W-A8YY-01 9 93627379 93627379 G A SYK Silent p.A282A 0.54 TCGA-2W-A8YY-01 9 94171575 94171575 G A NFIL3 3'UTR 0.45 TCGA-2W-A8YY-01 9 94172518 94172518 C T NFIL3 Missense_Mutation p.E167K 0.46 deleterious(0.02) possibly_damaging(0.907) TCGA-2W-A8YY-01 9 94495452 94495452 C T ROR2 Missense_Mutation p.A297T 0.35 tolerated(0.07) benign(0.305) TCGA-2W-A8YY-01 9 94499681 94499681 C T ROR2 Missense_Mutation p.R205Q 0.36 tolerated(0.61) benign(0.065) TCGA-2W-A8YY-01 9 95069247 95069247 G T NOL8 Missense_Mutation p.L916M 0.36 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 9 95076867 95076867 C T NOL8 Silent p.K680K 0.28 TCGA-2W-A8YY-01 9 95088213 95088213 G T CENPP 5'UTR 0.25 TCGA-2W-A8YY-01 9 95088224 95088224 G A CENPP 5'UTR 0.24 TCGA-2W-A8YY-01 9 95152135 95152135 C T OGN Splice_Site p.X210_splice 0.23 TCGA-2W-A8YY-01 9 95258623 95258623 C T ECM2 Missense_Mutation p.V692I 0.37 tolerated(0.24) benign(0.083) TCGA-2W-A8YY-01 9 95277052 95277052 C T ECM2 Silent p.P305P 0.31 TCGA-2W-A8YY-01 9 95376752 95376752 G C IPPK 3'UTR 0.42 TCGA-2W-A8YY-01 9 95377577 95377577 C T IPPK 3'UTR 0.33 TCGA-2W-A8YY-01 9 95380392 95380392 C T CENPP 3'UTR 0.54 TCGA-2W-A8YY-01 9 95397476 95397476 C T IPPK Missense_Mutation p.R344Q 0.33 tolerated(0.08) possibly_damaging(0.746) TCGA-2W-A8YY-01 9 95411765 95411765 C A IPPK Missense_Mutation p.E128D 0.37 tolerated(0.16) benign(0.203) TCGA-2W-A8YY-01 9 95475104 95475104 G A BICD2 3'UTR 0.53 TCGA-2W-A8YY-01 9 95475328 95475328 C T BICD2 3'UTR 0.25 TCGA-2W-A8YY-01 9 95599404 95599404 C T ANKRD19P RNA 0.49 TCGA-2W-A8YY-01 9 95599729 95599729 G A ANKRD19P RNA 0.42 TCGA-2W-A8YY-01 9 95610404 95610404 G A ZNF484 Missense_Mutation p.A224V 0.39 tolerated(0.55) benign(0.003) TCGA-2W-A8YY-01 9 95610524 95610524 C T ZNF484 Missense_Mutation p.G184E 0.35 tolerated(0.24) benign(0.004) TCGA-2W-A8YY-01 9 95870091 95870091 C T C9orf89 Missense_Mutation p.A48V 0.41 deleterious(0) benign(0.059) TCGA-2W-A8YY-01 9 95992016 95992016 G T WNK2 Missense_Mutation p.K240N 0.52 unknown(0) TCGA-2W-A8YY-01 9 95993262 95993262 C T WNK2 Missense_Mutation p.T316M 0.35 unknown(0) TCGA-2W-A8YY-01 9 96009891 96009891 G A WNK2 Missense_Mutation p.A537T 0.46 unknown(0) TCGA-2W-A8YY-01 9 96054943 96054943 T C WNK2 Silent p.R1769R 0.37 TCGA-2W-A8YY-01 9 96055194 96055194 C T WNK2 Missense_Mutation p.A1853V 0.64 unknown(0) TCGA-2W-A8YY-01 9 96080783 96080783 C T C9orf129 Missense_Mutation p.R163Q 0.23 tolerated_low_confidence(0.38) benign(0) TCGA-2W-A8YY-01 9 96214648 96214648 G A FAM120A Missense_Mutation p.A151T 0.20 deleterious(0) possibly_damaging(0.801) TCGA-2W-A8YY-01 9 96320933 96320933 G A FAM120A Silent p.A913A 0.44 TCGA-2W-A8YY-01 9 96327990 96327990 C A FAM120A 3'UTR 0.32 TCGA-2W-A8YY-01 9 96398728 96398728 G A PHF2 Missense_Mutation p.G74R 0.35 deleterious(0.05) unknown(0) TCGA-2W-A8YY-01 9 96407975 96407975 G A PHF2 Missense_Mutation p.G122S 0.10 tolerated(0.58) unknown(0) TCGA-2W-A8YY-01 9 96439234 96439234 C T PHF2 Missense_Mutation p.T1064I 0.11 tolerated(0.17) benign(0.403) TCGA-2W-A8YY-01 9 96439942 96439942 G A PHF2 Missense_Mutation p.G1092E 0.24 deleterious(0) probably_damaging(0.931) TCGA-2W-A8YY-01 9 96440196 96440196 G A PHF2 3'UTR 0.45 TCGA-2W-A8YY-01 9 96827081 96827081 C T PTPDC1 Silent p.S20S 0.26 TCGA-2W-A8YY-01 9 96857677 96857677 C T PTPDC1 Missense_Mutation p.T230I 0.40 deleterious(0.01) possibly_damaging(0.637) TCGA-2W-A8YY-01 9 96859619 96859619 T G PTPDC1 Missense_Mutation p.C255W 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 9 96870648 96870648 C - PTPDC1 3'UTR 0.24 TCGA-2W-A8YY-01 9 97063108 97063108 C G ZNF169 Missense_Mutation p.T423R 0.15 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 9 97063316 97063316 G A ZNF169 Silent p.G492G 0.52 TCGA-2W-A8YY-01 9 97082574 97082574 C T NUTM2F Silent p.P428P 0.31 TCGA-2W-A8YY-01 9 97563077 97563077 G A C9orf3 Missense_Mutation p.R386H 0.44 tolerated(0.05) benign(0.127) TCGA-2W-A8YY-01 9 97686449 97686449 G T C9orf3 Missense_Mutation p.A516S 0.50 deleterious(0) possibly_damaging(0.885) TCGA-2W-A8YY-01 9 97873889 97873889 G A FANCC Silent p.F395F 0.36 TCGA-2W-A8YY-01 9 98221971 98221971 G A PTCH1 Missense_Mutation p.A933V 0.39 deleterious(0) probably_damaging(0.913) TCGA-2W-A8YY-01 9 990167 990167 G A DMRT3 Missense_Mutation p.S194N 0.40 tolerated(0.1) possibly_damaging(0.827) TCGA-2W-A8YY-01 9 99084329 99084329 C T SLC35D2 Missense_Mutation p.G289S 0.29 tolerated(0.12) probably_damaging(0.992) TCGA-2W-A8YY-01 9 990852 990852 G A DMRT3 Silent p.S422S 0.22 TCGA-2W-A8YY-01 9 99220712 99220712 G A HABP4 Missense_Mutation p.R134H 0.20 deleterious(0.01) possibly_damaging(0.847) TCGA-2W-A8YY-01 9 99228008 99228008 G T HABP4 Missense_Mutation p.D231Y 0.23 deleterious(0) probably_damaging(0.964) TCGA-2W-A8YY-01 9 99580560 99580560 C A ZNF782 Missense_Mutation p.R582I 0.13 deleterious(0) probably_damaging(0.977) TCGA-2W-A8YY-01 9 99694495 99694495 G A NUTM2G Missense_Mutation p.V170M 0.18 tolerated(0.1) benign(0.261) TCGA-2W-A8YY-01 9 99700189 99700189 G A NUTM2G Missense_Mutation p.R449Q 0.09 tolerated(1) benign(0.057) TCGA-2W-A8YY-01 9 99799617 99799617 C A CTSV Missense_Mutation p.V105L 0.41 tolerated(0.69) benign(0) TCGA-2W-A8YY-01 X 100076577 100076577 A G CSTF2 Silent p.G40G 0.08 TCGA-2W-A8YY-01 X 100105262 100105262 C T NOX1 Nonsense_Mutation p.W337* 0.29 TCGA-2W-A8YY-01 X 100169993 100169993 G A XKRX Silent p.Y228Y 0.28 TCGA-2W-A8YY-01 X 100240824 100240824 A G ARL13A Missense_Mutation p.D100G 0.13 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 100349584 100349584 T C TMEM35 Missense_Mutation p.V48A 0.38 tolerated(1) benign(0.022) TCGA-2W-A8YY-01 X 100349694 100349694 C T TMEM35 Missense_Mutation p.R85C 0.37 deleterious(0.02) possibly_damaging(0.88) TCGA-2W-A8YY-01 X 100381755 100381755 C A CENPI Missense_Mutation p.L249M 0.40 tolerated(0.08) possibly_damaging(0.84) TCGA-2W-A8YY-01 X 100505509 100505509 T C DRP2 Silent p.G546G 0.26 TCGA-2W-A8YY-01 X 100658907 100658907 C T GLA Silent p.E87E 0.45 TCGA-2W-A8YY-01 X 100666999 100666999 G A HNRNPH2 Missense_Mutation p.R8K 0.35 tolerated(0.84) benign(0.01) TCGA-2W-A8YY-01 X 100668146 100668146 C T HNRNPH2 Silent p.G390G 0.41 TCGA-2W-A8YY-01 X 100668997 100668997 C T HNRNPH2 3'UTR 0.10 TCGA-2W-A8YY-01 X 100743941 100743941 G A ARMCX4 Missense_Mutation p.G122E 0.10 probably_damaging(0.988) TCGA-2W-A8YY-01 X 100809590 100809590 T C ARMCX1 3'UTR 0.42 TCGA-2W-A8YY-01 X 100879197 100879197 C T ARMCX3 5'UTR 0.18 TCGA-2W-A8YY-01 X 100880076 100880076 A - ARMCX3 Frame_Shift_Del p.M38Wfs*36 0.33 TCGA-2W-A8YY-01 X 100880845 100880845 C A ARMCX3 Silent p.L292L 0.29 TCGA-2W-A8YY-01 X 100881536 100881536 G A ARMCX3 3'UTR 0.13 TCGA-2W-A8YY-01 X 100882620 100882620 G T ARMCX3 3'UTR 0.46 TCGA-2W-A8YY-01 X 100882667 100882667 A G ARMCX3 3'UTR 0.44 TCGA-2W-A8YY-01 X 100910797 100910797 T G ARMCX2 Missense_Mutation p.K593T 0.50 deleterious(0.01) probably_damaging(0.952) TCGA-2W-A8YY-01 X 100911152 100911152 C A ARMCX2 Missense_Mutation p.D475Y 0.12 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 10098093 10098093 C T WWC3 Silent p.L844L 0.42 TCGA-2W-A8YY-01 X 101096738 101096738 G A NXF5 Nonsense_Mutation p.R50* 0.45 TCGA-2W-A8YY-01 X 101098272 101098272 G A NXF5 5'UTR 0.21 TCGA-2W-A8YY-01 X 101137650 101137650 A C ZMAT1 3'UTR 0.33 TCGA-2W-A8YY-01 X 101382495 101382495 G T TCEAL2 3'UTR 0.45 TCGA-2W-A8YY-01 X 101576729 101576729 C T NXF2 Nonsense_Mutation p.Q409* 0.16 TCGA-2W-A8YY-01 X 10176216 10176216 G A CLCN4 Silent p.T325T 0.35 TCGA-2W-A8YY-01 X 10176577 10176577 G A CLCN4 Missense_Mutation p.A446T 0.31 tolerated(0.36) benign(0.02) TCGA-2W-A8YY-01 X 101821928 101821928 T C NXF4 RNA 0.25 TCGA-2W-A8YY-01 X 101857464 101857464 C T ARMCX5 Missense_Mutation p.A132V 0.48 tolerated(0.46) benign(0.001) TCGA-2W-A8YY-01 X 101857849 101857849 G A ARMCX5 Silent p.G260G 0.32 TCGA-2W-A8YY-01 X 101859083 101859083 G A ARMCX5 3'UTR 0.37 TCGA-2W-A8YY-01 X 101908893 101908893 C A GPRASP1 Missense_Mutation p.P18T 0.10 tolerated(0.35) benign(0.005) TCGA-2W-A8YY-01 X 101912846 101912846 T G GPRASP1 Missense_Mutation p.I1335M 0.23 deleterious(0.03) probably_damaging(0.988) TCGA-2W-A8YY-01 X 101971062 101971062 C T GPRASP2 Missense_Mutation p.A422V 0.40 tolerated(0.44) benign(0) TCGA-2W-A8YY-01 X 10202032 10202032 G A CLCN4 3'UTR 0.47 TCGA-2W-A8YY-01 X 102564871 102564871 G A BEX2 Missense_Mutation p.L44F 0.49 tolerated(0.08) possibly_damaging(0.894) TCGA-2W-A8YY-01 X 102840449 102840449 G A TCEAL4 5'Flank 0.23 TCGA-2W-A8YY-01 X 102842289 102842289 C T TCEAL4 3'UTR 0.43 TCGA-2W-A8YY-01 X 102885371 102885371 T C TCEAL1 3'UTR 0.31 TCGA-2W-A8YY-01 X 103041424 103041424 A G PLP1 Silent p.G74G 0.40 TCGA-2W-A8YY-01 X 103046333 103046333 G T PLP1 3'UTR 0.45 TCGA-2W-A8YY-01 X 103046659 103046659 C T PLP1 3'UTR 0.51 TCGA-2W-A8YY-01 X 103268198 103268198 G A H2BFWT Missense_Mutation p.S12F 0.26 tolerated_low_confidence(0.09) benign(0.003) TCGA-2W-A8YY-01 X 103294894 103294894 C T H2BFM Silent p.I117I 0.27 TCGA-2W-A8YY-01 X 103349838 103349838 C T SLC25A53 Missense_Mutation p.A35T 0.31 deleterious(0.05) possibly_damaging(0.794) TCGA-2W-A8YY-01 X 103359097 103359097 C T ZCCHC18 Missense_Mutation p.R99C 0.26 tolerated(0.08) possibly_damaging(0.901) TCGA-2W-A8YY-01 X 103360425 103360425 A G SLC25A53 Intron 0.43 TCGA-2W-A8YY-01 X 103411431 103411431 G A FAM199X 5'UTR 0.49 TCGA-2W-A8YY-01 X 103499448 103499448 C T ESX1 Splice_Site p.X28_splice 0.23 TCGA-2W-A8YY-01 X 103499568 103499568 G T ESX1 5'UTR 0.31 TCGA-2W-A8YY-01 X 104728331 104728331 C T IL1RAPL2 Missense_Mutation p.P242S 0.37 tolerated(0.42) benign(0.101) TCGA-2W-A8YY-01 X 104961368 104961368 C A IL1RAPL2 Missense_Mutation p.L261M 0.39 tolerated(0.06) probably_damaging(0.962) TCGA-2W-A8YY-01 X 105142680 105142680 G A NRK Silent p.E228E 0.27 TCGA-2W-A8YY-01 X 105150462 105150462 C T NRK Missense_Mutation p.R301C 0.12 deleterious(0) possibly_damaging(0.651) TCGA-2W-A8YY-01 X 105150523 105150523 A G NRK Missense_Mutation p.H321R 0.46 tolerated(0.09) possibly_damaging(0.573) TCGA-2W-A8YY-01 X 10535512 10535512 C T MID1 Missense_Mutation p.A26T 0.25 deleterious(0.04) probably_damaging(1) TCGA-2W-A8YY-01 X 105451363 105451363 T C MUM1L1 Silent p.I646I 0.30 TCGA-2W-A8YY-01 X 105868353 105868353 G A CXorf57 Missense_Mutation p.V274M 0.08 tolerated(1) benign(0.28) TCGA-2W-A8YY-01 X 106039902 106039902 T C RNF128 3'UTR 0.11 TCGA-2W-A8YY-01 X 106093277 106093277 C A TBC1D8B Silent p.V620V 0.48 TCGA-2W-A8YY-01 X 106096825 106096825 A - TBC1D8B Frame_Shift_Del p.T735Pfs*11 0.31 TCGA-2W-A8YY-01 X 106119219 106119219 C T TBC1D8B 3'UTR 0.34 TCGA-2W-A8YY-01 X 106146439 106146439 C T RIPPLY1 Missense_Mutation p.A27T 0.51 tolerated(0.56) unknown(0) TCGA-2W-A8YY-01 X 106173881 106173881 C - CLDN2 3'UTR 0.35 TCGA-2W-A8YY-01 X 106228329 106228329 C T MORC4 Missense_Mutation p.R224H 0.07 tolerated(0.09) possibly_damaging(0.691) TCGA-2W-A8YY-01 X 106229316 106229316 C A MORC4 Missense_Mutation p.K141N 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 106845158 106845158 C T FRMPD3 Missense_Mutation p.R1330C 0.42 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 106845320 106845320 C T FRMPD3 Missense_Mutation p.R1384C 0.45 deleterious(0) possibly_damaging(0.86) TCGA-2W-A8YY-01 X 106893598 106893598 G A PRPS1 3'UTR 0.38 TCGA-2W-A8YY-01 X 106894107 106894107 G A PRPS1 3'UTR 0.11 TCGA-2W-A8YY-01 X 106957496 106957496 C T TSC22D3 3'UTR 0.56 TCGA-2W-A8YY-01 X 106960167 106960167 C T TSC22D3 Intron 0.36 TCGA-2W-A8YY-01 X 107037859 107037859 C T NCBP2L Missense_Mutation p.R137C 0.56 deleterious(0.02) benign(0.415) TCGA-2W-A8YY-01 X 107400034 107400034 C T COL4A6 3'UTR 0.50 TCGA-2W-A8YY-01 X 107400198 107400198 G A COL4A6 3'UTR 0.52 TCGA-2W-A8YY-01 X 107420076 107420076 G A COL4A6 Missense_Mutation p.P895L 0.42 benign(0.241) TCGA-2W-A8YY-01 X 107512274 107512274 C A COL4A6 Intron 0.11 TCGA-2W-A8YY-01 X 107681496 107681496 C T COL4A6 Intron 0.39 TCGA-2W-A8YY-01 X 107840233 107840233 C T COL4A5 Missense_Mutation p.L508F 0.39 unknown(0) TCGA-2W-A8YY-01 X 107850072 107850072 C T COL4A5 Missense_Mutation p.P782L 0.19 unknown(0) TCGA-2W-A8YY-01 X 107858180 107858180 C A COL4A5 Missense_Mutation p.P812H 0.30 unknown(0) TCGA-2W-A8YY-01 X 107911640 107911640 T C COL4A5 Silent p.G1232G 0.40 TCGA-2W-A8YY-01 X 107978344 107978344 G A IRS4 Nonsense_Mutation p.R411* 0.10 TCGA-2W-A8YY-01 X 108616227 108616227 C T GUCY2F Intron 0.09 TCGA-2W-A8YY-01 X 108787216 108787216 C T NXT2 3'UTR 0.32 TCGA-2W-A8YY-01 X 108884603 108884603 C T ACSL4 3'UTR 0.12 TCGA-2W-A8YY-01 X 108886516 108886516 T C ACSL4 3'UTR 0.44 TCGA-2W-A8YY-01 X 108902662 108902662 T G ACSL4 Missense_Mutation p.E633D 0.27 tolerated(0.46) benign(0) TCGA-2W-A8YY-01 X 108911479 108911479 G A ACSL4 Missense_Mutation p.A430V 0.35 tolerated(0.13) benign(0.038) TCGA-2W-A8YY-01 X 108926871 108926871 T C ACSL4 5'UTR 0.35 TCGA-2W-A8YY-01 X 109693965 109693965 G T RGAG1 Missense_Mutation p.Q40H 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 109695298 109695298 G A RGAG1 Missense_Mutation p.A485T 0.27 tolerated(0.19) benign(0.034) TCGA-2W-A8YY-01 X 109764950 109764950 A C TDGF1P3 RNA 0.23 TCGA-2W-A8YY-01 X 109919342 109919342 A G CHRDL1 3'UTR 0.13 TCGA-2W-A8YY-01 X 110039217 110039217 G A CHRDL1 5'Flank 0.29 TCGA-2W-A8YY-01 X 110439753 110439753 C A PAK3 Missense_Mutation p.P467H 0.47 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 110488421 110488421 A - CAPN6 3'UTR 0.29 TCGA-2W-A8YY-01 X 110489483 110489483 G T CAPN6 3'UTR 0.29 TCGA-2W-A8YY-01 X 110491955 110491955 C T CAPN6 Silent p.Q442Q 0.51 TCGA-2W-A8YY-01 X 110543713 110543713 G A DCX 3'UTR 0.38 TCGA-2W-A8YY-01 X 110951391 110951391 C A ALG13 Missense_Mutation p.L174I 0.40 tolerated_low_confidence(0.13) benign(0.048) TCGA-2W-A8YY-01 X 11140880 11140880 G A HCCS 3'UTR 0.39 TCGA-2W-A8YY-01 X 11155891 11155891 A G ARHGAP6 3'UTR 0.37 TCGA-2W-A8YY-01 X 11162147 11162147 G A ARHGAP6 Missense_Mutation p.S710L 0.37 deleterious(0.05) benign(0.001) TCGA-2W-A8YY-01 X 111698058 111698058 G A ZCCHC16 Silent p.T34T 0.42 TCGA-2W-A8YY-01 X 111699584 111699584 C T ZCCHC16 3'UTR 0.38 TCGA-2W-A8YY-01 X 112019093 112019093 G A AMOT 3'UTR 0.48 TCGA-2W-A8YY-01 X 112065490 112065490 C T AMOT Missense_Mutation p.A289T 0.27 unknown(0) TCGA-2W-A8YY-01 X 113949748 113949748 C A HTR2C Intron 0.26 TCGA-2W-A8YY-01 X 114142130 114142130 T G HTR2C 3'UTR 0.11 TCGA-2W-A8YY-01 X 114245327 114245327 C A IL13RA2 Nonsense_Mutation p.G196* 0.43 TCGA-2W-A8YY-01 X 114424017 114424017 G A RBMXL3 Missense_Mutation p.D5N 0.30 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-2W-A8YY-01 X 114424968 114424968 T A RBMXL3 Missense_Mutation p.S322T 0.25 deleterious_low_confidence(0.04) benign(0.222) TCGA-2W-A8YY-01 X 114425269 114425269 G A RBMXL3 Missense_Mutation p.R422H 0.38 tolerated_low_confidence(0.38) possibly_damaging(0.522) TCGA-2W-A8YY-01 X 114425910 114425910 C T RBMXL3 Missense_Mutation p.R636C 0.35 tolerated_low_confidence(0.14) benign(0.155) TCGA-2W-A8YY-01 X 114426020 114426020 C T RBMXL3 Silent p.Y672Y 0.37 TCGA-2W-A8YY-01 X 114426453 114426453 C T RBMXL3 Missense_Mutation p.R817C 0.41 deleterious_low_confidence(0) benign(0.428) TCGA-2W-A8YY-01 X 114426598 114426598 G A RBMXL3 Missense_Mutation p.R865Q 0.09 deleterious_low_confidence(0.02) benign(0.238) TCGA-2W-A8YY-01 X 114868380 114868380 C T PLS3 Missense_Mutation p.P190L 0.39 tolerated(0.33) possibly_damaging(0.486) TCGA-2W-A8YY-01 X 114952832 114952832 G A RP1-241P17.4 3'UTR 0.28 TCGA-2W-A8YY-01 X 115304717 115304717 T G AGTR2 3'UTR 0.34 TCGA-2W-A8YY-01 X 117032559 117032559 T C KLHL13 3'UTR 0.48 TCGA-2W-A8YY-01 X 117032740 117032740 T A KLHL13 3'UTR 0.19 TCGA-2W-A8YY-01 X 117033041 117033041 G A KLHL13 Missense_Mutation p.R603C 0.29 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 X 117043380 117043380 C T KLHL13 Missense_Mutation p.R420Q 0.44 tolerated(0.12) probably_damaging(0.996) TCGA-2W-A8YY-01 X 117575500 117575500 G T WDR44 Missense_Mutation p.R715I 0.39 deleterious(0) probably_damaging(0.969) TCGA-2W-A8YY-01 X 117700100 117700100 G A DOCK11 Missense_Mutation p.D276N 0.45 tolerated(0.05) benign(0.165) TCGA-2W-A8YY-01 X 117700129 117700129 G A DOCK11 Silent p.T285T 0.26 TCGA-2W-A8YY-01 X 117744258 117744258 C T DOCK11 Silent p.P991P 0.41 TCGA-2W-A8YY-01 X 11781090 11781090 C T MSL3 Silent p.N241N 0.30 TCGA-2W-A8YY-01 X 11781964 11781964 T C MSL3 Missense_Mutation p.V272A 0.29 deleterious(0.01) benign(0.174) TCGA-2W-A8YY-01 X 117819758 117819758 C T DOCK11 Silent p.Y2070Y 0.51 TCGA-2W-A8YY-01 X 117925937 117925937 G A IL13RA1 3'UTR 0.51 TCGA-2W-A8YY-01 X 11793184 11793184 C T MSL3 Missense_Mutation p.R518W 0.10 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-2W-A8YY-01 X 118143174 118143174 G T LONRF3 Missense_Mutation p.R539M 0.39 deleterious(0) possibly_damaging(0.806) TCGA-2W-A8YY-01 X 118147090 118147090 C T LONRF3 Missense_Mutation p.R634C 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 118284421 118284421 G A KIAA1210 Missense_Mutation p.A41V 0.43 tolerated_low_confidence(0.49) benign(0.001) TCGA-2W-A8YY-01 X 118604355 118604355 G T SLC25A5 Missense_Mutation p.K206N 0.48 deleterious(0.05) benign(0.01) TCGA-2W-A8YY-01 X 118723543 118723543 G A NKRF Silent p.R630R 0.34 TCGA-2W-A8YY-01 X 118724852 118724852 G A NKRF Missense_Mutation p.A194V 0.31 deleterious(0.04) possibly_damaging(0.815) TCGA-2W-A8YY-01 X 118725227 118725227 C A NKRF Missense_Mutation p.R69I 0.23 deleterious(0) probably_damaging(0.969) TCGA-2W-A8YY-01 X 118971741 118971741 C A UPF3B Missense_Mutation p.K427N 0.35 deleterious(0) probably_damaging(0.966) TCGA-2W-A8YY-01 X 119005513 119005513 G A RNF113A Missense_Mutation p.P22S 0.42 tolerated(0.74) benign(0.02) TCGA-2W-A8YY-01 X 119077505 119077505 G A NKAP Missense_Mutation p.R22C 0.28 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 X 119249827 119249827 G A RHOXF1 5'UTR 0.36 TCGA-2W-A8YY-01 X 119255028 119255028 G A GS1-421I3.4 5'Flank 0.24 TCGA-2W-A8YY-01 X 119392965 119392965 T A TMEM255A 3'UTR 0.29 TCGA-2W-A8YY-01 X 119419510 119419510 A G TMEM255A Silent p.V155V 0.34 TCGA-2W-A8YY-01 X 119513538 119513538 G A ATP1B4 3'UTR 0.41 TCGA-2W-A8YY-01 X 119562364 119562364 C A LAMP2 Missense_Mutation p.S404I 0.35 deleterious(0.01) possibly_damaging(0.676) TCGA-2W-A8YY-01 X 119571886 119571886 A G LAMP2 Intron 0.31 TCGA-2W-A8YY-01 X 119571964 119571964 G A LAMP2 Intron 0.48 TCGA-2W-A8YY-01 X 119572390 119572390 A G LAMP2 Intron 0.24 TCGA-2W-A8YY-01 X 119602779 119602779 C T LAMP2 Intron 0.19 TCGA-2W-A8YY-01 X 119660692 119660692 C A CUL4B Missense_Mutation p.R889I 0.37 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 X 120009256 120009256 G A CT47B1 Missense_Mutation p.A90V 0.09 tolerated(1) benign(0.014) TCGA-2W-A8YY-01 X 120009419 120009419 C T CT47B1 Missense_Mutation p.G36S 0.42 tolerated(0.53) probably_damaging(0.915) TCGA-2W-A8YY-01 X 120183442 120183442 G C GLUD2 3'UTR 0.67 TCGA-2W-A8YY-01 X 122318166 122318166 C T GRIA3 5'UTR 0.43 TCGA-2W-A8YY-01 X 122460032 122460032 G A GRIA3 Missense_Mutation p.E222K 0.12 tolerated(0.05) probably_damaging(0.999) TCGA-2W-A8YY-01 X 122551295 122551295 C T GRIA3 Missense_Mutation p.R515C 0.38 deleterious(0) probably_damaging(0.943) TCGA-2W-A8YY-01 X 122799493 122799493 C A THOC2 Missense_Mutation p.E462D 0.39 tolerated(0.28) benign(0.05) TCGA-2W-A8YY-01 X 123019511 123019511 A C XIAP 5'UTR 0.53 TCGA-2W-A8YY-01 X 123019538 123019538 C A XIAP Missense_Mutation p.S9Y 0.11 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-2W-A8YY-01 X 123026618 123026618 G T XIAP Missense_Mutation p.R365I 0.32 tolerated(0.21) benign(0.001) TCGA-2W-A8YY-01 X 123179216 123179216 C T STAG2 Missense_Mutation p.A222V 0.45 deleterious(0.02) benign(0.422) TCGA-2W-A8YY-01 X 123182926 123182926 C T STAG2 Silent p.Y297Y 0.08 TCGA-2W-A8YY-01 X 123234800 123234800 T A STAG2 3'UTR 0.28 TCGA-2W-A8YY-01 X 123235518 123235518 T C STAG2 3'Flank 0.46 TCGA-2W-A8YY-01 X 123235967 123235968 - A STAG2 3'Flank 0.20 TCGA-2W-A8YY-01 X 123513177 123513177 A C TENM1 3'UTR 0.35 TCGA-2W-A8YY-01 X 123518164 123518164 C T TENM1 Missense_Mutation p.R2206Q 0.42 deleterious(0.02) possibly_damaging(0.53) TCGA-2W-A8YY-01 X 123556430 123556430 A G TENM1 Missense_Mutation p.V1388A 0.41 deleterious(0) benign(0.089) TCGA-2W-A8YY-01 X 123615704 123615704 G A TENM1 Missense_Mutation p.T1276M 0.35 tolerated(0.22) benign(0.048) TCGA-2W-A8YY-01 X 123680796 123680797 - A TENM1 Frame_Shift_Ins p.Y860Lfs*2 0.25 TCGA-2W-A8YY-01 X 123699408 123699408 G A TENM1 Silent p.L694L 0.34 TCGA-2W-A8YY-01 X 123785765 123785765 A G TENM1 Silent p.I526I 0.34 TCGA-2W-A8YY-01 X 123785874 123785874 G A TENM1 Missense_Mutation p.S490L 0.39 tolerated(0.12) benign(0.007) TCGA-2W-A8YY-01 X 123838968 123838968 C T TENM1 Missense_Mutation p.A304T 0.30 tolerated_low_confidence(0.11) benign(0.026) TCGA-2W-A8YY-01 X 125685568 125685568 G A DCAF12L1 Missense_Mutation p.R342W 0.39 tolerated(0.06) benign(0.021) TCGA-2W-A8YY-01 X 12739589 12739589 C T FRMPD4 3'UTR 0.12 TCGA-2W-A8YY-01 X 128582345 128582345 C A SMARCA1 Missense_Mutation p.A1036S 0.38 tolerated(0.25) benign(0.128) TCGA-2W-A8YY-01 X 128626061 128626061 C A SMARCA1 Nonsense_Mutation p.E558* 0.40 TCGA-2W-A8YY-01 X 128650350 128650350 C T SMARCA1 Missense_Mutation p.R129Q 0.27 tolerated(0.15) benign(0.11) TCGA-2W-A8YY-01 X 128703272 128703272 C T OCRL Nonsense_Mutation p.R500* 0.37 TCGA-2W-A8YY-01 X 128780446 128780446 C A APLN 3'UTR 0.29 TCGA-2W-A8YY-01 X 128886291 128886291 C T XPNPEP2 Silent p.T329T 0.40 TCGA-2W-A8YY-01 X 128922537 128922537 C T SASH3 Missense_Mutation p.A95V 0.28 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 128927740 128927740 C T SASH3 Missense_Mutation p.R359C 0.37 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 X 128939323 128939323 T C ZDHHC9 3'UTR 0.25 TCGA-2W-A8YY-01 X 128946757 128946757 G A ZDHHC9 Silent p.S238S 0.39 TCGA-2W-A8YY-01 X 128976018 128976018 C T ZDHHC9 5'UTR 0.59 TCGA-2W-A8YY-01 X 12906681 12906681 C T TLR7 Silent p.N1018N 0.43 TCGA-2W-A8YY-01 X 129149512 129149512 G A BCORL1 Missense_Mutation p.V922I 0.42 benign(0.135) TCGA-2W-A8YY-01 X 129149582 129149582 G A BCORL1 Missense_Mutation p.R945Q 0.42 benign(0.173) TCGA-2W-A8YY-01 X 129171380 129171380 T C BCORL1 Silent p.D1448D 0.34 TCGA-2W-A8YY-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.41 TCGA-2W-A8YY-01 X 129199183 129199183 T C ELF4 3'UTR 0.62 TCGA-2W-A8YY-01 X 129200696 129200696 T G ELF4 Nonstop_Mutation p.*664Yext*8 0.28 TCGA-2W-A8YY-01 X 129271592 129271592 G T AIFM1 Intron 0.39 TCGA-2W-A8YY-01 X 129338356 129338356 C T ZNF280C 3'UTR 0.45 TCGA-2W-A8YY-01 X 129338374 129338374 C A ZNF280C 3'UTR 0.27 TCGA-2W-A8YY-01 X 129338943 129338943 G A ZNF280C 3'UTR 0.51 TCGA-2W-A8YY-01 X 129536313 129536313 C T RBMX2 Silent p.S30S 0.39 TCGA-2W-A8YY-01 X 129629140 129629140 C T RP1-274L7.1 RNA 0.39 TCGA-2W-A8YY-01 X 129629796 129629796 G A RP1-274L7.1 Intron 0.35 TCGA-2W-A8YY-01 X 129759395 129759395 G T ENOX2 Missense_Mutation p.L576I 0.38 tolerated(0.1) probably_damaging(0.99) TCGA-2W-A8YY-01 X 130192407 130192407 G A ARHGAP36 5'UTR 0.09 TCGA-2W-A8YY-01 X 130223657 130223657 G A ARHGAP36 3'UTR 0.31 TCGA-2W-A8YY-01 X 130410039 130410039 G T IGSF1 Missense_Mutation p.T936N 0.50 tolerated(0.19) benign(0.398) TCGA-2W-A8YY-01 X 131206314 131206314 A C MST4 Missense_Mutation p.E317D 0.30 tolerated(0.84) benign(0.005) TCGA-2W-A8YY-01 X 131337512 131337512 A G RAP2C 3'UTR 0.44 TCGA-2W-A8YY-01 X 131337946 131337946 G A RAP2C 3'UTR 0.30 TCGA-2W-A8YY-01 X 131348409 131348409 T C RAP2C Silent p.L113L 0.38 TCGA-2W-A8YY-01 X 131573621 131573621 C T MBNL3 Missense_Mutation p.A7T 0.21 tolerated(0.58) benign(0.004) TCGA-2W-A8YY-01 X 131762346 131762346 G A HS6ST2 Missense_Mutation p.R615W 0.35 deleterious_low_confidence(0) benign(0.28) TCGA-2W-A8YY-01 X 132161617 132161617 G A USP26 Missense_Mutation p.S211L 0.24 tolerated(1) benign(0) TCGA-2W-A8YY-01 X 132436522 132436522 C A GPC4 3'UTR 0.25 TCGA-2W-A8YY-01 X 132440157 132440157 C T GPC4 Silent p.R301R 0.38 TCGA-2W-A8YY-01 X 132473227 132473227 A G GPC4 Silent p.R101R 0.46 TCGA-2W-A8YY-01 X 132669791 132669792 - T GPC3 3'UTR 0.35 TCGA-2W-A8YY-01 X 133379007 133379007 T C CCDC160 Silent p.S59S 0.26 TCGA-2W-A8YY-01 X 133551320 133551320 G A PHF6 Missense_Mutation p.R319Q 0.47 tolerated(0.11) possibly_damaging(0.822) TCGA-2W-A8YY-01 X 133560516 133560516 T C PHF6 3'UTR 0.31 TCGA-2W-A8YY-01 X 133674619 133674619 G A MIR450A2 RNA 0.46 TCGA-2W-A8YY-01 X 133700346 133700346 A G PLAC1 Missense_Mutation p.W123R 0.31 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 133923276 133923276 C T FAM122B Silent p.V85V 0.49 TCGA-2W-A8YY-01 X 133988335 133988335 C T FAM122C 3'UTR 0.57 TCGA-2W-A8YY-01 X 134125712 134125712 G A SMIM10 3'UTR 0.37 TCGA-2W-A8YY-01 X 134156082 134156082 G A FAM127C 3'UTR 0.43 TCGA-2W-A8YY-01 X 134167435 134167435 G T FAM127A 3'UTR 0.41 TCGA-2W-A8YY-01 X 134186074 134186074 C T FAM127B Missense_Mutation p.R22H 0.41 tolerated(0.05) probably_damaging(0.912) TCGA-2W-A8YY-01 X 134303548 134303548 A G CT55 Silent p.D83D 0.35 TCGA-2W-A8YY-01 X 134482926 134482926 T C ZNF449 Intron 0.38 TCGA-2W-A8YY-01 X 134556388 134556388 C T LINC00086 RNA 0.36 TCGA-2W-A8YY-01 X 134654930 134654930 C T DDX26B Silent p.L5L 0.39 TCGA-2W-A8YY-01 X 134715010 134715010 C T DDX26B Nonsense_Mutation p.Q807* 0.40 TCGA-2W-A8YY-01 X 134993871 134993871 G T SAGE1 Missense_Mutation p.L760F 0.34 deleterious(0.04) probably_damaging(0.996) TCGA-2W-A8YY-01 X 134994030 134994030 A G SAGE1 Silent p.P813P 0.11 TCGA-2W-A8YY-01 X 135055931 135055931 G A MMGT1 5'UTR 0.24 TCGA-2W-A8YY-01 X 135129252 135129252 A G SLC9A6 3'UTR 0.44 TCGA-2W-A8YY-01 X 135292298 135292298 C T FHL1 3'UTR 0.43 TCGA-2W-A8YY-01 X 135323418 135323418 G T MAP7D3 Missense_Mutation p.L146I 0.38 tolerated(0.05) possibly_damaging(0.566) TCGA-2W-A8YY-01 X 135426742 135426742 C T GPR112 Missense_Mutation p.P293S 0.35 tolerated(0.07) benign(0.091) TCGA-2W-A8YY-01 X 135429670 135429670 C T GPR112 Missense_Mutation p.P1269S 0.46 tolerated(0.37) benign(0.024) TCGA-2W-A8YY-01 X 135433603 135433603 C A GPR112 Intron 0.34 TCGA-2W-A8YY-01 X 135441590 135441590 G A GPR112 Missense_Mutation p.E2374K 0.30 tolerated(0.06) benign(0.171) TCGA-2W-A8YY-01 X 135591303 135591303 G A HTATSF1 Silent p.S296S 0.49 TCGA-2W-A8YY-01 X 135592275 135592275 G A HTATSF1 Missense_Mutation p.R320Q 0.33 deleterious(0.04) benign(0.038) TCGA-2W-A8YY-01 X 135593089 135593089 G A HTATSF1 Silent p.G395G 0.43 TCGA-2W-A8YY-01 X 135593454 135593454 T C HTATSF1 Missense_Mutation p.L517P 0.36 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-2W-A8YY-01 X 135633043 135633043 A G VGLL1 Intron 0.44 TCGA-2W-A8YY-01 X 135750226 135750226 G A ARHGEF6 Nonsense_Mutation p.R765* 0.35 TCGA-2W-A8YY-01 X 13587811 13587811 G A EGFL6 5'UTR 0.44 TCGA-2W-A8YY-01 X 135954444 135954444 C T RBMX 3'Flank 0.39 TCGA-2W-A8YY-01 X 136649473 136649473 A G ZIC3 Missense_Mutation p.D208G 0.30 deleterious(0.01) benign(0.318) TCGA-2W-A8YY-01 X 136649562 136649562 G A ZIC3 Missense_Mutation p.A238T 0.11 deleterious(0) probably_damaging(0.99) TCGA-2W-A8YY-01 X 136649719 136649719 C T ZIC3 Missense_Mutation p.P290L 0.40 deleterious(0.02) possibly_damaging(0.881) TCGA-2W-A8YY-01 X 136649815 136649815 A G ZIC3 Missense_Mutation p.H322R 0.41 deleterious(0.01) benign(0.038) TCGA-2W-A8YY-01 X 136652973 136652973 T G ZIC3 3'UTR 0.32 TCGA-2W-A8YY-01 X 13681162 13681162 G T TCEANC Nonsense_Mutation p.E209* 0.09 TCGA-2W-A8YY-01 X 13681449 13681449 G A TCEANC Silent p.T304T 0.44 TCGA-2W-A8YY-01 X 13774875 13774875 G A OFD1 Missense_Mutation p.R467H 0.40 tolerated(0.96) benign(0.002) TCGA-2W-A8YY-01 X 13778282 13778282 G A OFD1 Missense_Mutation p.R568H 0.33 tolerated(0.26) benign(0.014) TCGA-2W-A8YY-01 X 13778755 13778755 C T OFD1 Missense_Mutation p.R726C 0.45 tolerated(0.18) benign(0.009) TCGA-2W-A8YY-01 X 13803803 13803803 G A GPM6B Silent p.T102T 0.44 TCGA-2W-A8YY-01 X 138642914 138642914 T C F9 Silent p.G246G 0.38 TCGA-2W-A8YY-01 X 138644163 138644163 A G F9 Missense_Mutation p.K440R 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-2W-A8YY-01 X 138670538 138670538 C T MCF2 Silent p.K886K 0.46 TCGA-2W-A8YY-01 X 138810138 138810138 C A ATP11C 3'UTR 0.46 TCGA-2W-A8YY-01 X 138840023 138840023 G A ATP11C Missense_Mutation p.L885F 0.42 tolerated(0.15) benign(0.109) TCGA-2W-A8YY-01 X 138879362 138879362 C T ATP11C Silent p.K330K 0.46 TCGA-2W-A8YY-01 X 139038686 139038686 G A CXorf66 Missense_Mutation p.A152V 0.16 tolerated(0.07) benign(0.389) TCGA-2W-A8YY-01 X 139586646 139586646 G A SOX3 Nonsense_Mutation p.R194* 0.28 TCGA-2W-A8YY-01 X 14026900 14026900 C T GEMIN8 3'UTR 0.24 TCGA-2W-A8YY-01 X 140270724 140270724 G A LDOC1 3'UTR 0.41 TCGA-2W-A8YY-01 X 140270918 140270918 T C LDOC1 Missense_Mutation p.T97A 0.11 deleterious(0.03) benign(0.287) TCGA-2W-A8YY-01 X 14027172 14027172 G A GEMIN8 Missense_Mutation p.R197C 0.34 deleterious(0.04) benign(0.259) TCGA-2W-A8YY-01 X 140714666 140714666 A - RP1-171K16.5 RNA 0.28 TCGA-2W-A8YY-01 X 140992831 140992831 C T MAGEC1 5'UTR 0.41 TCGA-2W-A8YY-01 X 140994436 140994436 T G MAGEC1 Missense_Mutation p.F416V 0.33 tolerated_low_confidence(0.1) benign(0.307) TCGA-2W-A8YY-01 X 141290882 141290882 C T MAGEC2 Missense_Mutation p.E298K 0.09 deleterious(0.04) probably_damaging(0.927) TCGA-2W-A8YY-01 X 142717276 142717276 C T SLITRK4 Missense_Mutation p.S550N 0.31 tolerated(0.76) benign(0) TCGA-2W-A8YY-01 X 142717750 142717750 A G SLITRK4 Missense_Mutation p.V392A 0.37 deleterious(0) benign(0.081) TCGA-2W-A8YY-01 X 142718132 142718132 C A SLITRK4 Missense_Mutation p.G265C 0.38 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 X 142718925 142718925 C A SLITRK4 5'UTR 0.09 TCGA-2W-A8YY-01 X 142967418 142967418 C T UBE2NL Silent p.F72F 0.40 TCGA-2W-A8YY-01 X 144905780 144905780 C T SLITRK2 Missense_Mutation p.H613Y 0.35 deleterious(0.04) benign(0.01) TCGA-2W-A8YY-01 X 14547613 14547613 C T GLRA2 5'Flank 0.34 TCGA-2W-A8YY-01 X 14550461 14550461 G A GLRA2 Missense_Mutation p.G57R 0.20 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 14622497 14622497 C A GLRA2 Silent p.T185T 0.41 TCGA-2W-A8YY-01 X 146280591 146280591 A G MIR513B RNA 0.39 TCGA-2W-A8YY-01 X 147030232 147030232 T C FMR1 Silent p.S589S 0.39 TCGA-2W-A8YY-01 X 147062936 147062936 G T FMR1NB Missense_Mutation p.R5M 0.27 tolerated(0.08) benign(0.102) TCGA-2W-A8YY-01 X 147106420 147106420 G A FMR1NB Missense_Mutation p.R223K 0.41 tolerated(0.23) benign(0.001) TCGA-2W-A8YY-01 X 14748802 14748802 T A GLRA2 3'UTR 0.09 TCGA-2W-A8YY-01 X 14749078 14749078 C T GLRA2 3'UTR 0.29 TCGA-2W-A8YY-01 X 14749171 14749171 G A GLRA2 3'UTR 0.29 TCGA-2W-A8YY-01 X 147800728 147800728 A G AFF2 Intron 0.41 TCGA-2W-A8YY-01 X 148048529 148048529 G A AFF2 Silent p.E1041E 0.35 TCGA-2W-A8YY-01 X 148568477 148568477 C T IDS Missense_Mutation p.A176T 0.11 tolerated(0.62) benign(0.002) TCGA-2W-A8YY-01 X 148584874 148584874 A G IDS Missense_Mutation p.V129A 0.32 tolerated(0.44) benign(0.102) TCGA-2W-A8YY-01 X 148607474 148607474 T C IDS Intron 0.40 TCGA-2W-A8YY-01 X 148630993 148630993 C T CXorf40A 3'Flank 0.36 TCGA-2W-A8YY-01 X 14876022 14876022 G A FANCB Missense_Mutation p.R387C 0.26 tolerated(0.19) benign(0.006) TCGA-2W-A8YY-01 X 149014108 149014108 C T MAGEA8 3'UTR 0.21 TCGA-2W-A8YY-01 X 149014474 149014474 G A MAGEA8 3'UTR 0.21 TCGA-2W-A8YY-01 X 149100699 149100699 A G CXorf40B 3'UTR 0.27 TCGA-2W-A8YY-01 X 149100975 149100975 G A CXorf40B Silent p.D88D 0.35 TCGA-2W-A8YY-01 X 149639041 149639041 T C MAMLD1 Missense_Mutation p.L374P 0.43 tolerated(0.16) probably_damaging(0.977) TCGA-2W-A8YY-01 X 149639602 149639602 C A MAMLD1 Missense_Mutation p.A561D 0.24 deleterious(0) possibly_damaging(0.824) TCGA-2W-A8YY-01 X 1497619 1497619 G A IL3RA Silent p.T314T 0.34 TCGA-2W-A8YY-01 X 149814302 149814302 C T MTM1 Silent p.T275T 0.17 TCGA-2W-A8YY-01 X 149903979 149903979 A G MTMR1 Intron 0.31 TCGA-2W-A8YY-01 X 149931131 149931131 G A MTMR1 Missense_Mutation p.A643T 0.46 tolerated(0.19) benign(0.002) TCGA-2W-A8YY-01 X 149945836 149945836 C A CD99L2 Intron 0.30 TCGA-2W-A8YY-01 X 149963718 149963718 G A CD99L2 Nonsense_Mutation p.R131* 0.30 TCGA-2W-A8YY-01 X 150156270 150156270 G A HMGB3 Silent p.S162S 0.34 TCGA-2W-A8YY-01 X 150156847 150156847 G A HMGB3 3'UTR 0.55 TCGA-2W-A8YY-01 X 150345326 150345326 G A GPR50 Missense_Mutation p.G45S 0.51 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 X 150348453 150348453 G A GPR50 Missense_Mutation p.S133N 0.57 tolerated(0.06) possibly_damaging(0.512) TCGA-2W-A8YY-01 X 150349356 150349356 C A GPR50 Missense_Mutation p.S434Y 0.40 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-2W-A8YY-01 X 1505443 1505443 G A SLC25A6 3'UTR 0.20 TCGA-2W-A8YY-01 X 150832788 150832788 G A PASD1 Missense_Mutation p.V347M 0.35 deleterious(0.05) possibly_damaging(0.864) TCGA-2W-A8YY-01 X 1508372 1508372 G A SLC25A6 Silent p.G120G 0.42 TCGA-2W-A8YY-01 X 150869391 150869391 C T PRRG3 Silent p.Y194Y 0.41 TCGA-2W-A8YY-01 X 150885868 150885868 A C FATE1 Missense_Mutation p.K77N 0.26 tolerated(0.08) probably_damaging(0.99) TCGA-2W-A8YY-01 X 150906969 150906969 C A CNGA2 Missense_Mutation p.T5N 0.42 tolerated_low_confidence(0.18) benign(0.004) TCGA-2W-A8YY-01 X 150907351 150907351 G A CNGA2 Missense_Mutation p.R68K 0.38 deleterious(0.05) possibly_damaging(0.676) TCGA-2W-A8YY-01 X 150911739 150911739 G A CNGA2 Missense_Mutation p.R255H 0.30 deleterious(0) probably_damaging(0.952) TCGA-2W-A8YY-01 X 150912764 150912764 G A CNGA2 Missense_Mutation p.V597M 0.41 tolerated(0.3) benign(0.047) TCGA-2W-A8YY-01 X 151092864 151092864 C A MAGEA4 Missense_Mutation p.P243H 0.35 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 X 151123962 151123962 C A GABRE Missense_Mutation p.A339S 0.40 deleterious(0.03) possibly_damaging(0.535) TCGA-2W-A8YY-01 X 151139712 151139712 C A GABRE Intron 0.44 TCGA-2W-A8YY-01 X 151303805 151303805 G A MAGEA10 Silent p.V96V 0.32 TCGA-2W-A8YY-01 X 151358217 151358217 C A GABRA3 Missense_Mutation p.E376D 0.38 tolerated(0.23) possibly_damaging(0.672) TCGA-2W-A8YY-01 X 151532931 151532931 C T GABRA3 Missense_Mutation p.G38R 0.31 deleterious_low_confidence(0.02) benign(0.001) TCGA-2W-A8YY-01 X 151821667 151821667 G A GABRQ Missense_Mutation p.D608N 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 151869727 151869727 C T MAGEA6 Silent p.V139V 0.09 TCGA-2W-A8YY-01 X 151896013 151896013 G T MAGEA12 3'Flank 0.38 TCGA-2W-A8YY-01 X 151900316 151900316 A G MAGEA12 Missense_Mutation p.F162S 0.40 deleterious(0.03) probably_damaging(0.99) TCGA-2W-A8YY-01 X 151997191 151997191 G T CETN2 Missense_Mutation p.L107M 0.38 tolerated(0.22) benign(0.04) TCGA-2W-A8YY-01 X 152027320 152027320 T C NSDHL Missense_Mutation p.Y92H 0.36 tolerated(0.14) possibly_damaging(0.796) TCGA-2W-A8YY-01 X 152037690 152037690 C T NSDHL 3'UTR 0.47 TCGA-2W-A8YY-01 X 152083332 152083332 A G ZNF185 Missense_Mutation p.D38G 0.44 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 X 152113898 152113898 A C ZNF185 Missense_Mutation p.Q464H 0.16 tolerated(0.35) benign(0.029) TCGA-2W-A8YY-01 X 152227695 152227695 G A PNMA3 3'UTR 0.51 TCGA-2W-A8YY-01 X 152228825 152228825 C T PNMA3 3'UTR 0.36 TCGA-2W-A8YY-01 X 15267025 15267025 A G ASB9 Missense_Mutation p.S201P 0.41 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 X 152686688 152686688 A G ZFP92 Missense_Mutation p.T285A 0.15 tolerated(0.16) benign(0.335) TCGA-2W-A8YY-01 X 152686744 152686744 C T ZFP92 Silent p.G303G 0.13 TCGA-2W-A8YY-01 X 152721087 152721087 G A HAUS7 Silent p.G291G 0.35 TCGA-2W-A8YY-01 X 152772036 152772036 C T BGN Silent p.F205F 0.34 TCGA-2W-A8YY-01 X 152815549 152815549 C T ATP2B3 Missense_Mutation p.T543M 0.13 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 152818645 152818645 C T ATP2B3 Missense_Mutation p.P659L 0.41 deleterious(0.04) probably_damaging(0.994) TCGA-2W-A8YY-01 X 152821865 152821865 C T ATP2B3 Missense_Mutation p.T772I 0.25 tolerated(0.06) probably_damaging(0.945) TCGA-2W-A8YY-01 X 152822387 152822387 G T ATP2B3 Missense_Mutation p.S780I 0.40 deleterious(0) probably_damaging(0.956) TCGA-2W-A8YY-01 X 152826222 152826222 C T ATP2B3 Silent p.F976F 0.41 TCGA-2W-A8YY-01 X 152835187 152835187 G A ATP2B3 Intron 0.33 TCGA-2W-A8YY-01 X 152846600 152846600 T G ATP2B3 3'UTR 0.37 TCGA-2W-A8YY-01 X 152857993 152857993 C T FAM58A Missense_Mutation p.E208K 0.36 tolerated(0.26) benign(0.022) TCGA-2W-A8YY-01 X 152858078 152858078 C T FAM58A Silent p.A179A 0.44 TCGA-2W-A8YY-01 X 152860083 152860083 G A FAM58A Silent p.L115L 0.19 TCGA-2W-A8YY-01 X 152915532 152915532 C T DUSP9 Silent p.L309L 0.23 TCGA-2W-A8YY-01 X 152936756 152936756 C T PNCK Missense_Mutation p.V283I 0.33 tolerated(0.06) benign(0.009) TCGA-2W-A8YY-01 X 152937023 152937023 A G PNCK Silent p.C256C 0.38 TCGA-2W-A8YY-01 X 152954028 152954028 C T SLC6A8 5'UTR 0.32 TCGA-2W-A8YY-01 X 152955849 152955849 C T SLC6A8 Silent p.Y94Y 0.35 TCGA-2W-A8YY-01 X 152961176 152961176 C T SLC6A8 3'UTR 0.38 TCGA-2W-A8YY-01 X 152967494 152967494 C T BCAP31 Missense_Mutation p.D291N 0.12 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 X 152981107 152981107 C T BCAP31 Silent p.T144T 0.41 TCGA-2W-A8YY-01 X 152989012 152989012 C T BCAP31 Silent p.S36S 0.39 TCGA-2W-A8YY-01 X 152989137 152989137 G A BCAP31 5'UTR 0.31 TCGA-2W-A8YY-01 X 152991416 152991416 C T ABCD1 Missense_Mutation p.A232V 0.29 tolerated(0.21) benign(0.002) TCGA-2W-A8YY-01 X 152991496 152991496 C T ABCD1 Missense_Mutation p.R259W 0.28 deleterious(0) probably_damaging(0.988) TCGA-2W-A8YY-01 X 153032993 153032993 C A PLXNB3 Silent p.A260A 0.31 TCGA-2W-A8YY-01 X 153033011 153033011 C T PLXNB3 Silent p.S266S 0.50 TCGA-2W-A8YY-01 X 153037385 153037385 C T PLXNB3 Missense_Mutation p.R885W 0.40 deleterious(0.04) possibly_damaging(0.84) TCGA-2W-A8YY-01 X 153040381 153040381 C T PLXNB3 Silent p.S1349S 0.30 TCGA-2W-A8YY-01 X 153044928 153044928 C T SRPK3 5'Flank 0.42 TCGA-2W-A8YY-01 X 153047586 153047586 G A SRPK3 Missense_Mutation p.S133N 0.37 deleterious(0.02) possibly_damaging(0.479) TCGA-2W-A8YY-01 X 153051358 153051358 C T IDH3G Missense_Mutation p.R384H 0.42 tolerated(0.07) possibly_damaging(0.466) TCGA-2W-A8YY-01 X 153059880 153059880 A G SSR4 5'UTR 0.43 TCGA-2W-A8YY-01 X 153074033 153074033 G T PDZD4 Silent p.L26L 0.32 TCGA-2W-A8YY-01 X 153134977 153134977 A G L1CAM Missense_Mutation p.V422A 0.40 deleterious(0) benign(0.289) TCGA-2W-A8YY-01 X 153137678 153137678 C T L1CAM Missense_Mutation p.G110D 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 153137740 153137740 C T L1CAM Silent p.S89S 0.32 TCGA-2W-A8YY-01 X 153141281 153141281 G A L1CAM Missense_Mutation p.A4V 0.09 tolerated_low_confidence(0.25) benign(0.003) TCGA-2W-A8YY-01 X 153171778 153171778 C T AVPR2 Missense_Mutation p.T273M 0.31 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 153173310 153173310 C T ARHGAP4 Missense_Mutation p.R945Q 0.50 tolerated(0.18) benign(0.01) TCGA-2W-A8YY-01 X 153184317 153184317 C T ARHGAP4 Missense_Mutation p.R374H 0.38 deleterious(0) benign(0.066) TCGA-2W-A8YY-01 X 153186194 153186194 C A ARHGAP4 Missense_Mutation p.E189D 0.35 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 X 153208342 153208342 C - RENBP Frame_Shift_Del p.D218Tfs*65 0.33 TCGA-2W-A8YY-01 X 153208481 153208481 G A RENBP Silent p.D171D 0.08 TCGA-2W-A8YY-01 X 153210041 153210041 G A RENBP Nonsense_Mutation p.R8* 0.13 TCGA-2W-A8YY-01 X 153215929 153215929 G A HCFC1 Silent p.Y1923Y 0.12 TCGA-2W-A8YY-01 X 153217445 153217445 C T HCFC1 Missense_Mutation p.A1703T 0.33 tolerated_low_confidence(0.37) probably_damaging(0.971) TCGA-2W-A8YY-01 X 153219129 153219129 C T HCFC1 Missense_Mutation p.V1476M 0.43 deleterious_low_confidence(0.04) benign(0.183) TCGA-2W-A8YY-01 X 153220842 153220842 T A HCFC1 Missense_Mutation p.D1003V 0.28 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-2W-A8YY-01 X 153222127 153222127 C T HCFC1 Missense_Mutation p.V862I 0.45 deleterious_low_confidence(0.04) probably_damaging(0.949) TCGA-2W-A8YY-01 X 153222787 153222787 G A HCFC1 Silent p.I777I 0.13 TCGA-2W-A8YY-01 X 153228722 153228722 G A HCFC1 Silent p.G222G 0.42 TCGA-2W-A8YY-01 X 153247541 153247541 G A TMEM187 Missense_Mutation p.V10M 0.37 tolerated(0.1) benign(0.001) TCGA-2W-A8YY-01 X 153247727 153247727 C T TMEM187 Silent p.L72L 0.14 TCGA-2W-A8YY-01 X 153247821 153247821 G A TMEM187 Missense_Mutation p.R103H 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-2W-A8YY-01 X 153248440 153248440 C T TMEM187 3'UTR 0.44 TCGA-2W-A8YY-01 X 153290190 153290190 T G IRAK1 5'Flank 0.39 TCGA-2W-A8YY-01 X 153291132 153291132 C T MECP2 3'Flank 0.48 TCGA-2W-A8YY-01 X 153293824 153293824 G A MECP2 3'Flank 0.53 TCGA-2W-A8YY-01 X 153295471 153295471 C T MECP2 3'Flank 0.39 TCGA-2W-A8YY-01 X 153295950 153295950 G A MECP2 Silent p.A455A 0.46 TCGA-2W-A8YY-01 X 153296674 153296674 G A MECP2 Missense_Mutation p.A214V 0.35 tolerated(0.3) benign(0.022) TCGA-2W-A8YY-01 X 153297718 153297718 C T MECP2 Missense_Mutation p.R118Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 X 15344061 15344061 G A PIGA Missense_Mutation p.R275W 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-2W-A8YY-01 X 153578448 153578448 G A FLNA Silent p.D2428D 0.24 TCGA-2W-A8YY-01 X 153580338 153580338 G A FLNA Missense_Mutation p.A2274V 0.39 deleterious(0.01) possibly_damaging(0.889) TCGA-2W-A8YY-01 X 153580664 153580664 G A FLNA Silent p.G2218G 0.25 TCGA-2W-A8YY-01 X 153587648 153587648 G A FLNA Silent p.S1423S 0.36 TCGA-2W-A8YY-01 X 153588265 153588265 G A FLNA Missense_Mutation p.R1272C 0.40 deleterious(0.03) possibly_damaging(0.624) TCGA-2W-A8YY-01 X 153588549 153588549 G A FLNA Missense_Mutation p.A1205V 0.12 tolerated(0.14) possibly_damaging(0.863) TCGA-2W-A8YY-01 X 153588742 153588742 C T FLNA Missense_Mutation p.A1141T 0.20 deleterious(0.04) possibly_damaging(0.901) TCGA-2W-A8YY-01 X 153588918 153588918 G A FLNA Missense_Mutation p.A1082V 0.41 tolerated(1) benign(0.003) TCGA-2W-A8YY-01 X 153599290 153599290 C T FLNA Silent p.S108S 0.10 TCGA-2W-A8YY-01 X 153626685 153626685 G A RPL10 5'UTR 0.45 TCGA-2W-A8YY-01 X 153626700 153626700 G A RPL10 5'UTR 0.38 TCGA-2W-A8YY-01 X 153662051 153662051 G A ATP6AP1 Silent p.A223A 0.33 TCGA-2W-A8YY-01 X 153688585 153688585 G T PLXNA3 Missense_Mutation p.R21M 0.27 tolerated(0.11) benign(0.36) TCGA-2W-A8YY-01 X 153690630 153690630 C T PLXNA3 Missense_Mutation p.R433C 0.36 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 153691777 153691777 T C PLXNA3 Missense_Mutation p.V454A 0.42 deleterious(0.02) possibly_damaging(0.469) TCGA-2W-A8YY-01 X 153691977 153691977 C T PLXNA3 Silent p.C497C 0.36 TCGA-2W-A8YY-01 X 153692303 153692303 C T PLXNA3 Silent p.R519R 0.21 TCGA-2W-A8YY-01 X 153694756 153694756 C T PLXNA3 Missense_Mutation p.P946L 0.30 deleterious(0) probably_damaging(0.98) TCGA-2W-A8YY-01 X 153695575 153695575 A G PLXNA3 Missense_Mutation p.T1068A 0.35 tolerated(0.87) benign(0.338) TCGA-2W-A8YY-01 X 153695759 153695759 C T PLXNA3 Missense_Mutation p.P1129L 0.34 tolerated(0.35) probably_damaging(0.945) TCGA-2W-A8YY-01 X 153696534 153696534 C T PLXNA3 Silent p.G1310G 0.50 TCGA-2W-A8YY-01 X 153699453 153699453 C T PLXNA3 Missense_Mutation p.P1721L 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 153713582 153713582 G T UBL4A 3'UTR 0.43 TCGA-2W-A8YY-01 X 153713659 153713659 C T UBL4A 3'UTR 0.40 TCGA-2W-A8YY-01 X 153759919 153759919 G A G6PD 3'UTR 0.42 TCGA-2W-A8YY-01 X 153760181 153760181 G T G6PD 3'UTR 0.30 TCGA-2W-A8YY-01 X 153760605 153760605 G A G6PD Missense_Mutation p.R484C 0.46 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 X 153761000 153761000 G A G6PD Missense_Mutation p.R387C 0.42 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 153774282 153774282 T C G6PD Missense_Mutation p.D60G 0.31 tolerated(0.12) benign(0.052) TCGA-2W-A8YY-01 X 153940609 153940609 G A GAB3 Missense_Mutation p.R322C 0.40 tolerated(0.11) benign(0.008) TCGA-2W-A8YY-01 X 154009945 154009945 C T MPP1 Missense_Mutation p.G360D 0.44 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 154065960 154065960 C T F8 Missense_Mutation p.R2323H 0.41 deleterious(0) probably_damaging(0.978) TCGA-2W-A8YY-01 X 1540689 1540689 G A ASMTL Silent p.G369G 0.36 TCGA-2W-A8YY-01 X 154113393 154113393 C T H2AFB1 Silent p.T23T 0.18 TCGA-2W-A8YY-01 X 154113515 154113515 C T H2AFB1 Missense_Mutation p.T64M 0.16 deleterious(0.02) probably_damaging(0.988) TCGA-2W-A8YY-01 X 154115583 154115583 G A F8A1 Missense_Mutation p.G312S 0.12 tolerated(0.64) probably_damaging(0.935) TCGA-2W-A8YY-01 X 154221362 154221362 A G F8 Silent p.G150G 0.49 TCGA-2W-A8YY-01 X 154456695 154456695 C A VBP1 Missense_Mutation p.F105L 0.45 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 X 154490423 154490423 A G RAB39B Missense_Mutation p.W103R 0.53 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 1546828 1546828 C T ASMTL Silent p.A232A 0.39 TCGA-2W-A8YY-01 X 155005179 155005179 T C SPRY3 3'UTR 0.31 TCGA-2W-A8YY-01 X 155005431 155005431 C A SPRY3 3'UTR 0.23 TCGA-2W-A8YY-01 X 155172779 155172779 G A VAMP7 3'UTR 0.50 TCGA-2W-A8YY-01 X 155255055 155255055 C T WASH6P RNA 0.21 TCGA-2W-A8YY-01 X 15529589 15529589 C A BMX Silent p.V91V 0.43 TCGA-2W-A8YY-01 X 15534244 15534244 G A BMX Missense_Mutation p.G112D 0.43 tolerated(0.25) benign(0.036) TCGA-2W-A8YY-01 X 1561153 1561153 A G ASMTL Missense_Mutation p.F51L 0.27 deleterious(0) probably_damaging(0.963) TCGA-2W-A8YY-01 X 15663117 15663117 C T TMEM27 Missense_Mutation p.R80K 0.28 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 X 15721086 15721086 G A CA5BP1 RNA 0.37 TCGA-2W-A8YY-01 X 1585385 1585385 C T P2RY8 Missense_Mutation p.A23T 0.44 tolerated(0.39) benign(0.007) TCGA-2W-A8YY-01 X 16863211 16863211 T A RBBP7 Missense_Mutation p.N453Y 0.45 deleterious(0.01) benign(0.171) TCGA-2W-A8YY-01 X 16875790 16875790 T C RBBP7 Missense_Mutation p.H219R 0.37 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 X 1712592 1712592 C T AKAP17A Silent p.F79F 0.41 TCGA-2W-A8YY-01 X 1714325 1714325 C T AKAP17A Missense_Mutation p.R271W 0.52 deleterious(0) unknown(0) TCGA-2W-A8YY-01 X 1714382 1714382 C T AKAP17A Missense_Mutation p.R290C 0.29 deleterious(0) unknown(0) TCGA-2W-A8YY-01 X 17169751 17169751 G A REPS2 3'UTR 0.74 TCGA-2W-A8YY-01 X 17170860 17170860 C T REPS2 3'UTR 0.43 TCGA-2W-A8YY-01 X 17737514 17737514 G A NHS Intron 0.35 TCGA-2W-A8YY-01 X 17744909 17744909 G A NHS Missense_Mutation p.A874T 0.44 deleterious(0.02) benign(0.016) TCGA-2W-A8YY-01 X 17750225 17750225 C T NHS Missense_Mutation p.R1512C 0.41 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 17768114 17768114 A G SCML1 Missense_Mutation p.E135G 0.36 tolerated(0.14) benign(0.001) TCGA-2W-A8YY-01 X 18258569 18258569 G A SCML2 3'UTR 0.58 TCGA-2W-A8YY-01 X 18626974 18626974 C T CDKL5 Missense_Mutation p.S663L 0.40 tolerated_low_confidence(0.3) benign(0) TCGA-2W-A8YY-01 X 18660077 18660077 C T RS1 3'UTR 0.26 TCGA-2W-A8YY-01 X 18660141 18660141 C T RS1 Missense_Mutation p.V220I 0.09 deleterious_low_confidence(0.05) benign(0.005) TCGA-2W-A8YY-01 X 18748397 18748397 G A PPEF1 Missense_Mutation p.E49K 0.37 deleterious(0) probably_damaging(0.949) TCGA-2W-A8YY-01 X 18911723 18911723 G A PHKA2 Silent p.I1196I 0.09 TCGA-2W-A8YY-01 X 18913090 18913090 G T PHKA2 Intron 0.58 TCGA-2W-A8YY-01 X 18925162 18925162 G A PHKA2 Silent p.P857P 0.13 TCGA-2W-A8YY-01 X 18925177 18925177 G A PHKA2 Silent p.T852T 0.25 TCGA-2W-A8YY-01 X 18926092 18926092 C T PHKA2 Missense_Mutation p.G815S 0.41 tolerated(0.27) probably_damaging(0.954) TCGA-2W-A8YY-01 X 18943861 18943861 C T PHKA2 Silent p.P498P 0.43 TCGA-2W-A8YY-01 X 18959761 18959761 C T PHKA2 Silent p.S250S 0.12 TCGA-2W-A8YY-01 X 19046340 19046340 C A GPR64 Missense_Mutation p.E125D 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.9) TCGA-2W-A8YY-01 X 19367473 19367473 C T PDHA1 Missense_Mutation p.A72V 0.08 tolerated(0.08) benign(0.036) TCGA-2W-A8YY-01 X 19368071 19368071 G A PDHA1 Missense_Mutation p.R83Q 0.43 tolerated(0.15) benign(0.006) TCGA-2W-A8YY-01 X 19368194 19368194 T G PDHA1 Missense_Mutation p.I124S 0.40 tolerated(0.17) possibly_damaging(0.829) TCGA-2W-A8YY-01 X 19377615 19377615 T C PDHA1 Silent p.D377D 0.30 TCGA-2W-A8YY-01 X 19379646 19379646 G A MAP3K15 Missense_Mutation p.R1249W 0.33 deleterious(0) possibly_damaging(0.462) TCGA-2W-A8YY-01 X 19416377 19416377 A G MAP3K15 Missense_Mutation p.I678T 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-2W-A8YY-01 X 19418733 19418733 C T MAP3K15 Silent p.T631T 0.49 TCGA-2W-A8YY-01 X 19564142 19564142 G A SH3KBP1 Silent p.F507F 0.38 TCGA-2W-A8YY-01 X 19689003 19689003 C T SH3KBP1 Intron 0.12 TCGA-2W-A8YY-01 X 19854376 19854376 T C SH3KBP1 Missense_Mutation p.Y10C 0.30 deleterious(0) benign(0.112) TCGA-2W-A8YY-01 X 19954000 19954000 C A CXorf23 Missense_Mutation p.R597I 0.54 deleterious(0.05) benign(0.271) TCGA-2W-A8YY-01 X 19971952 19971952 A G CXorf23 Silent p.D503D 0.39 TCGA-2W-A8YY-01 X 20034274 20034274 C T MAP7D2 Missense_Mutation p.E528K 0.38 deleterious(0) unknown(0) TCGA-2W-A8YY-01 X 20044032 20044032 G A MAP7D2 Missense_Mutation p.T349M 0.28 tolerated(0.43) benign(0.119) TCGA-2W-A8YY-01 X 20044046 20044046 C T MAP7D2 Silent p.Q344Q 0.46 TCGA-2W-A8YY-01 X 20074888 20074888 G A MAP7D2 Missense_Mutation p.R132C 0.48 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 20081543 20081543 G A MAP7D2 Missense_Mutation p.R121W 0.38 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 20145715 20145715 A G EIF1AX 3'UTR 0.14 TCGA-2W-A8YY-01 X 20170276 20170276 T G RPS6KA3 3'UTR 0.31 TCGA-2W-A8YY-01 X 20170523 20170523 A G RPS6KA3 3'UTR 0.30 TCGA-2W-A8YY-01 X 20170529 20170529 T C RPS6KA3 3'UTR 0.34 TCGA-2W-A8YY-01 X 20173490 20173490 G A RPS6KA3 3'UTR 0.19 TCGA-2W-A8YY-01 X 20173543 20173543 A T RPS6KA3 Silent p.I732I 0.32 TCGA-2W-A8YY-01 X 20187586 20187586 G T RPS6KA3 Missense_Mutation p.D459E 0.44 deleterious(0.03) probably_damaging(0.997) TCGA-2W-A8YY-01 X 2139265 2139265 G A DHRSX Silent p.P270P 0.41 TCGA-2W-A8YY-01 X 21515908 21515908 A G CNKSR2 Missense_Mutation p.M229V 0.40 deleterious(0) possibly_damaging(0.475) TCGA-2W-A8YY-01 X 21627510 21627510 C T CNKSR2 Missense_Mutation p.P823S 0.46 deleterious(0.04) possibly_damaging(0.49) TCGA-2W-A8YY-01 X 21674037 21674037 C T KLHL34 Missense_Mutation p.A624T 0.43 tolerated(0.44) benign(0.001) TCGA-2W-A8YY-01 X 21674889 21674889 C T KLHL34 Missense_Mutation p.D340N 0.53 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 X 22012723 22012723 A G SMS 3'UTR 0.26 TCGA-2W-A8YY-01 X 22115115 22115115 A G PHEX Missense_Mutation p.N298D 0.07 deleterious(0.02) possibly_damaging(0.818) TCGA-2W-A8YY-01 X 22151647 22151647 A C PHEX Missense_Mutation p.E437A 0.34 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 X 22196474 22196474 A C PHEX Missense_Mutation p.K523Q 0.36 tolerated(0.09) possibly_damaging(0.621) TCGA-2W-A8YY-01 X 22291568 22291568 C T ZNF645 Missense_Mutation p.R154C 0.31 tolerated(0.17) benign(0.091) TCGA-2W-A8YY-01 X 22291585 22291585 G A ZNF645 Silent p.P159P 0.42 TCGA-2W-A8YY-01 X 224136 224136 G A GTPBP6 Missense_Mutation p.R211W 0.30 deleterious(0.03) possibly_damaging(0.676) TCGA-2W-A8YY-01 X 229513 229513 C T GTPBP6 Missense_Mutation p.R50H 0.32 deleterious(0) probably_damaging(0.927) TCGA-2W-A8YY-01 X 23019158 23019158 C T DDX53 Silent p.C328C 0.24 TCGA-2W-A8YY-01 X 2326784 2326784 A G DHRSX Splice_Site p.X96_splice 0.32 TCGA-2W-A8YY-01 X 23353266 23353266 C T PTCHD1 Missense_Mutation p.R92C 0.31 deleterious(0) probably_damaging(0.91) TCGA-2W-A8YY-01 X 23398058 23398058 C T PTCHD1 Silent p.C234C 0.46 TCGA-2W-A8YY-01 X 23704487 23704487 C A PRDX4 3'UTR 0.30 TCGA-2W-A8YY-01 X 23726058 23726058 C T ACOT9 Silent p.P222P 0.38 TCGA-2W-A8YY-01 X 23751298 23751298 G A ACOT9 Missense_Mutation p.T61I 0.47 deleterious(0.03) possibly_damaging(0.481) TCGA-2W-A8YY-01 X 23933892 23933892 C T CXorf58 Nonsense_Mutation p.Q98* 0.40 TCGA-2W-A8YY-01 X 2408757 2408757 C T ZBED1 Missense_Mutation p.E2K 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.643) TCGA-2W-A8YY-01 X 24231880 24231880 T C ZFX 3'UTR 0.10 TCGA-2W-A8YY-01 X 24552101 24552101 G A PDK3 Missense_Mutation p.R378H 0.45 deleterious(0) possibly_damaging(0.728) TCGA-2W-A8YY-01 X 25014512 25014512 G A POLA1 3'UTR 0.55 TCGA-2W-A8YY-01 X 2656284 2656284 C T CD99 Silent p.N173N 0.07 TCGA-2W-A8YY-01 X 2715400 2715400 C T XG Silent p.H124H 0.39 TCGA-2W-A8YY-01 X 2732594 2732594 T C XG 3'Flank 0.60 TCGA-2W-A8YY-01 X 27765667 27765667 C T DCAF8L2 Missense_Mutation p.R219C 0.39 tolerated(0.22) benign(0.005) TCGA-2W-A8YY-01 X 27766604 27766604 G T DCAF8L2 Missense_Mutation p.S531I 0.35 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 X 27997135 27997135 C A DCAF8L1 3'UTR 0.41 TCGA-2W-A8YY-01 X 27997721 27997721 C A DCAF8L1 Missense_Mutation p.L577F 0.09 tolerated(0.09) benign(0.018) TCGA-2W-A8YY-01 X 27998251 27998251 C T DCAF8L1 Missense_Mutation p.D401N 0.36 tolerated(0.3) benign(0.066) TCGA-2W-A8YY-01 X 27998737 27998737 C T DCAF8L1 Missense_Mutation p.D239N 0.45 deleterious(0.02) benign(0) TCGA-2W-A8YY-01 X 27999099 27999099 C T DCAF8L1 Missense_Mutation p.R118Q 0.38 tolerated_low_confidence(0.71) benign(0.004) TCGA-2W-A8YY-01 X 2836114 2836114 C T ARSD Silent p.A198A 0.32 TCGA-2W-A8YY-01 X 2852846 2852846 G A ARSE 3'Flank 0.43 TCGA-2W-A8YY-01 X 2873477 2873477 C T ARSE Missense_Mutation p.G96D 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 2947405 2947405 G T ARSH Missense_Mutation p.K439N 0.46 deleterious(0.02) benign(0.292) TCGA-2W-A8YY-01 X 2951290 2951290 G A ARSH Missense_Mutation p.R518H 0.33 deleterious(0.02) benign(0.033) TCGA-2W-A8YY-01 X 299622 299622 G A PPP2R3B Missense_Mutation p.T454M 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-2W-A8YY-01 X 3002590 3002590 C T ARSF Missense_Mutation p.T238M 0.38 tolerated(0.24) possibly_damaging(0.806) TCGA-2W-A8YY-01 X 301561 301561 C A PPP2R3B Missense_Mutation p.E430D 0.35 tolerated(0.06) possibly_damaging(0.887) TCGA-2W-A8YY-01 X 30236729 30236729 C T MAGEB2 Missense_Mutation p.A11V 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-2W-A8YY-01 X 30269584 30269584 G A MAGEB1 Missense_Mutation p.R325H 0.50 tolerated(0.47) unknown(0) TCGA-2W-A8YY-01 X 30322727 30322727 A G NR0B1 Missense_Mutation p.M461T 0.38 deleterious(0) probably_damaging(0.914) TCGA-2W-A8YY-01 X 30327128 30327128 G A NR0B1 Missense_Mutation p.A118V 0.33 deleterious_low_confidence(0) benign(0.001) TCGA-2W-A8YY-01 X 30577486 30577487 - A CXorf21 3'UTR 0.50 TCGA-2W-A8YY-01 X 30578295 30578295 A G CXorf21 Missense_Mutation p.S60P 0.43 deleterious(0.03) benign(0.006) TCGA-2W-A8YY-01 X 30845629 30845629 C T TAB3 3'UTR 0.37 TCGA-2W-A8YY-01 X 30847187 30847187 G A TAB3 3'UTR 0.15 TCGA-2W-A8YY-01 X 30873056 30873056 T C TAB3 Silent p.R242R 0.35 TCGA-2W-A8YY-01 X 31137632 31137632 C T DMD 3'UTR 0.35 TCGA-2W-A8YY-01 X 31139481 31139481 G T DMD 3'UTR 0.33 TCGA-2W-A8YY-01 X 31224785 31224785 C T DMD Splice_Site p.X3188_splice 0.13 TCGA-2W-A8YY-01 X 322197 322197 G A PPP2R3B Silent p.T151T 0.41 TCGA-2W-A8YY-01 X 3229411 3229411 C T MXRA5 Missense_Mutation p.S2278N 0.38 tolerated(0.16) possibly_damaging(0.858) TCGA-2W-A8YY-01 X 3235332 3235332 G A MXRA5 Silent p.S2130S 0.37 TCGA-2W-A8YY-01 X 3235473 3235473 G A MXRA5 Silent p.L2083L 0.13 TCGA-2W-A8YY-01 X 3235678 3235678 G A MXRA5 Missense_Mutation p.A2015V 0.28 tolerated(0.16) possibly_damaging(0.692) TCGA-2W-A8YY-01 X 3242372 3242372 G A MXRA5 Silent p.L452L 0.31 TCGA-2W-A8YY-01 X 3248281 3248281 G T MXRA5 Missense_Mutation p.L163I 0.53 deleterious(0.03) probably_damaging(0.985) TCGA-2W-A8YY-01 X 34149056 34149056 G C FAM47A Missense_Mutation p.A447G 0.40 tolerated(1) probably_damaging(0.971) TCGA-2W-A8YY-01 X 34149301 34149301 C T FAM47A Silent p.A365A 0.41 TCGA-2W-A8YY-01 X 34149571 34149571 G A FAM47A Silent p.D275D 0.31 TCGA-2W-A8YY-01 X 34646402 34646402 A G TMEM47 3'UTR 0.39 TCGA-2W-A8YY-01 X 34646564 34646564 C A TMEM47 3'UTR 0.31 TCGA-2W-A8YY-01 X 35820427 35820427 C T MAGEB16 Silent p.L38L 0.20 TCGA-2W-A8YY-01 X 36007729 36007729 C T CXorf22 3'UTR 0.30 TCGA-2W-A8YY-01 X 36328963 36328963 T C CXorf30 Missense_Mutation p.F181L 0.39 deleterious(0) benign(0.167) TCGA-2W-A8YY-01 X 37300710 37300710 G A PRRG1 Intron 0.36 TCGA-2W-A8YY-01 X 37300757 37300757 A G PRRG1 Intron 0.52 TCGA-2W-A8YY-01 X 37301306 37301306 C T PRRG1 Intron 0.69 TCGA-2W-A8YY-01 X 37431100 37431100 G A LANCL3 5'UTR 0.22 TCGA-2W-A8YY-01 X 37431372 37431372 G A LANCL3 Silent p.P83P 0.47 TCGA-2W-A8YY-01 X 37518786 37518786 C T LANCL3 Missense_Mutation p.R257W 0.12 deleterious(0) possibly_damaging(0.606) TCGA-2W-A8YY-01 X 37641413 37641413 T C CYBB Missense_Mutation p.F40L 0.43 tolerated(0.4) benign(0.013) TCGA-2W-A8YY-01 X 37655332 37655332 C A CYBB Silent p.V204V 0.34 TCGA-2W-A8YY-01 X 37706770 37706770 G A DYNLT3 5'UTR 0.21 TCGA-2W-A8YY-01 X 37965890 37965890 C T SYTL5 Silent p.D422D 0.42 TCGA-2W-A8YY-01 X 38533489 38533489 C T TSPAN7 Silent p.F120F 0.39 TCGA-2W-A8YY-01 X 38540530 38540530 G A TSPAN7 Missense_Mutation p.A224T 0.47 tolerated(0.09) possibly_damaging(0.84) TCGA-2W-A8YY-01 X 38547878 38547878 A G TSPAN7 3'UTR 0.39 TCGA-2W-A8YY-01 X 38664178 38664178 C T MID1IP1 5'UTR 0.09 TCGA-2W-A8YY-01 X 38664192 38664192 C T MID1IP1 5'UTR 0.46 TCGA-2W-A8YY-01 X 38665355 38665355 C T MID1IP1 3'UTR 0.31 TCGA-2W-A8YY-01 X 39911116 39911116 G A BCOR 3'UTR 0.41 TCGA-2W-A8YY-01 X 39930341 39930341 G A BCOR Silent p.S1041S 0.31 TCGA-2W-A8YY-01 X 39932515 39932515 T C BCOR Missense_Mutation p.H695R 0.24 tolerated(0.26) probably_damaging(0.992) TCGA-2W-A8YY-01 X 40465251 40465251 T C ATP6AP2 3'UTR 0.36 TCGA-2W-A8YY-01 X 40489755 40489755 A C CXorf38 Intron 0.33 TCGA-2W-A8YY-01 X 40510922 40510922 A C MED14 3'UTR 0.46 TCGA-2W-A8YY-01 X 40522177 40522177 C T MED14 Silent p.T1228T 0.32 TCGA-2W-A8YY-01 X 40522362 40522362 G A MED14 Missense_Mutation p.R1167C 0.37 deleterious(0) probably_damaging(0.991) TCGA-2W-A8YY-01 X 40573848 40573848 G A MED14 Missense_Mutation p.P155S 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 X 41007760 41007760 G A USP9X Missense_Mutation p.V520M 0.08 deleterious(0) possibly_damaging(0.573) TCGA-2W-A8YY-01 X 41047319 41047319 G A USP9X Silent p.S1253S 0.10 TCGA-2W-A8YY-01 X 41075398 41075398 A C USP9X Missense_Mutation p.S1860R 0.39 tolerated(0.11) benign(0.159) TCGA-2W-A8YY-01 X 41088927 41088927 G A USP9X Nonsense_Mutation p.W2442* 0.40 TCGA-2W-A8YY-01 X 41092905 41092905 A C USP9X 3'UTR 0.39 TCGA-2W-A8YY-01 X 41094966 41094966 T A USP9X 3'UTR 0.33 TCGA-2W-A8YY-01 X 41095236 41095236 C A USP9X 3'UTR 0.49 TCGA-2W-A8YY-01 X 41202502 41202502 G A DDX3X Missense_Mutation p.G193R 0.40 tolerated(0.4) benign(0.327) TCGA-2W-A8YY-01 X 41203305 41203305 G A DDX3X Missense_Mutation p.R263H 0.45 tolerated(0.05) benign(0.044) TCGA-2W-A8YY-01 X 41333771 41333771 A G NYX Silent p.G355G 0.25 TCGA-2W-A8YY-01 X 41524623 41524623 G A CASK Silent p.C205C 0.11 TCGA-2W-A8YY-01 X 41587372 41587372 T C GPR82 3'UTR 0.45 TCGA-2W-A8YY-01 X 43590559 43590559 G A MAOA Silent p.K239K 0.09 TCGA-2W-A8YY-01 X 43741654 43741654 C T MAOB 5'UTR 0.30 TCGA-2W-A8YY-01 X 44109480 44109480 T G EFHC2 Missense_Mutation p.D273A 0.22 deleterious(0) probably_damaging(0.938) TCGA-2W-A8YY-01 X 44171883 44171883 C T EFHC2 Silent p.K54K 0.33 TCGA-2W-A8YY-01 X 44949135 44949135 C T KDM6A Silent p.G1232G 0.11 TCGA-2W-A8YY-01 X 44949136 44949136 T C KDM6A Missense_Mutation p.W1233R 0.27 deleterious(0) probably_damaging(0.971) TCGA-2W-A8YY-01 X 44971043 44971043 G A KDM6A 3'UTR 0.37 TCGA-2W-A8YY-01 X 44971503 44971503 C A KDM6A 3'UTR 0.30 TCGA-2W-A8YY-01 X 44971590 44971590 C T KDM6A 3'UTR 0.43 TCGA-2W-A8YY-01 X 45060144 45060144 G T CXorf36 5'UTR 0.42 TCGA-2W-A8YY-01 X 46332288 46332288 C T KRBOX4 Silent p.S119S 0.32 TCGA-2W-A8YY-01 X 46433473 46433473 G A CHST7 Missense_Mutation p.R36H 0.31 deleterious_low_confidence(0.03) benign(0.09) TCGA-2W-A8YY-01 X 46433698 46433698 G A CHST7 Missense_Mutation p.R111H 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 46433953 46433953 G A CHST7 Missense_Mutation p.R196Q 0.30 tolerated(0.16) possibly_damaging(0.536) TCGA-2W-A8YY-01 X 46618353 46618353 C T SLC9A7 Missense_Mutation p.A38T 0.43 tolerated(0.41) benign(0.006) TCGA-2W-A8YY-01 X 46887440 46887440 T C JADE3 Missense_Mutation p.S208P 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 46915487 46915487 C T JADE3 Nonsense_Mutation p.R483* 0.41 TCGA-2W-A8YY-01 X 47040691 47040691 G A RBM10 Silent p.E442E 0.27 TCGA-2W-A8YY-01 X 47058309 47058309 G A UBA1 Silent p.V36V 0.31 TCGA-2W-A8YY-01 X 47064887 47064887 C T UBA1 Intron 0.40 TCGA-2W-A8YY-01 X 47083039 47083039 C A CDK16 Missense_Mutation p.P102H 0.09 tolerated_low_confidence(0.07) benign(0.305) TCGA-2W-A8YY-01 X 47098876 47098876 G A USP11 Missense_Mutation p.R181H 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-2W-A8YY-01 X 47099818 47099818 C T USP11 Missense_Mutation p.T260M 0.41 deleterious(0) possibly_damaging(0.88) TCGA-2W-A8YY-01 X 47104270 47104270 C T USP11 Missense_Mutation p.T721M 0.32 tolerated(0.13) probably_damaging(0.954) TCGA-2W-A8YY-01 X 47271974 47271974 G - ZNF157 Frame_Shift_Del p.A170Lfs*12 0.35 TCGA-2W-A8YY-01 X 47426737 47426737 C T ARAF Missense_Mutation p.R328W 0.38 deleterious(0.03) probably_damaging(0.956) TCGA-2W-A8YY-01 X 47430781 47430781 G A ARAF Silent p.S582S 0.36 TCGA-2W-A8YY-01 X 47444560 47444560 G T TIMP1 Intron 0.50 TCGA-2W-A8YY-01 X 47445057 47445057 G T TIMP1 Missense_Mutation p.E148D 0.42 tolerated_low_confidence(0.46) benign(0.001) TCGA-2W-A8YY-01 X 47486706 47486706 G A CFP Silent p.G200G 0.39 TCGA-2W-A8YY-01 X 47495819 47495819 G T ELK1 3'UTR 0.38 TCGA-2W-A8YY-01 X 47497184 47497184 G A ELK1 Missense_Mutation p.A351V 0.26 deleterious(0.03) benign(0.007) TCGA-2W-A8YY-01 X 47497334 47497334 G A ELK1 Missense_Mutation p.A301V 0.39 tolerated(0.35) benign(0.002) TCGA-2W-A8YY-01 X 47500669 47500669 C T ELK1 Missense_Mutation p.D58N 0.45 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 47867812 47867812 G A SPACA5 Missense_Mutation p.A62T 0.20 tolerated(0.23) benign(0.007) TCGA-2W-A8YY-01 X 48054778 48054778 G A SSX5 Missense_Mutation p.A6V 0.44 deleterious_low_confidence(0.02) benign(0.167) TCGA-2W-A8YY-01 X 48207736 48207736 A G SSX3 Intron 0.33 TCGA-2W-A8YY-01 X 48214102 48214102 T C SSX3 Missense_Mutation p.Y50C 0.06 deleterious(0) benign(0.408) TCGA-2W-A8YY-01 X 48270287 48270287 T G SSX4B Missense_Mutation p.K30N 0.06 deleterious(0) possibly_damaging(0.694) TCGA-2W-A8YY-01 X 48317278 48317278 C T SLC38A5 3'UTR 0.44 TCGA-2W-A8YY-01 X 48326122 48326122 C T SLC38A5 Missense_Mutation p.G35E 0.36 tolerated(0.13) benign(0.005) TCGA-2W-A8YY-01 X 48367836 48367836 G A PORCN 5'Flank 0.31 TCGA-2W-A8YY-01 X 48371055 48371055 C T PORCN Missense_Mutation p.P212S 0.42 tolerated(0.1) probably_damaging(0.986) TCGA-2W-A8YY-01 X 48371094 48371094 C T PORCN Missense_Mutation p.R225C 0.33 tolerated(0.1) possibly_damaging(0.849) TCGA-2W-A8YY-01 X 48374124 48374124 C T PORCN Silent p.L322L 0.09 TCGA-2W-A8YY-01 X 48417468 48417468 C T TBC1D25 Intron 0.39 TCGA-2W-A8YY-01 X 48417690 48417690 C T TBC1D25 Missense_Mutation p.R221C 0.59 deleterious(0) probably_damaging(0.996) TCGA-2W-A8YY-01 X 48435434 48435434 G A RBM3 Missense_Mutation p.R145H 0.37 tolerated(0.51) benign(0.05) TCGA-2W-A8YY-01 X 48455985 48455985 C T WDR13 5'UTR 0.31 TCGA-2W-A8YY-01 X 48463256 48463256 T C WDR13 Missense_Mutation p.C432R 0.34 deleterious(0.01) possibly_damaging(0.753) TCGA-2W-A8YY-01 X 48463280 48463280 C T WDR13 Missense_Mutation p.R440W 0.34 deleterious(0) probably_damaging(0.952) TCGA-2W-A8YY-01 X 48631873 48631873 T C GLOD5 3'UTR 0.35 TCGA-2W-A8YY-01 X 48676713 48676713 C T HDAC6 Missense_Mutation p.A694V 0.44 deleterious(0) possibly_damaging(0.906) TCGA-2W-A8YY-01 X 48676769 48676769 G A HDAC6 Missense_Mutation p.A713T 0.33 tolerated(0.09) benign(0.05) TCGA-2W-A8YY-01 X 48681175 48681175 G A HDAC6 Missense_Mutation p.R828H 0.30 tolerated(0.05) benign(0.03) TCGA-2W-A8YY-01 X 48688071 48688071 A G ERAS Missense_Mutation p.T180A 0.34 deleterious(0.03) benign(0.084) TCGA-2W-A8YY-01 X 48760210 48760210 C T PQBP1 Missense_Mutation p.T216M 0.13 deleterious(0.01) possibly_damaging(0.696) TCGA-2W-A8YY-01 X 48760996 48760996 G T SLC35A2 Intron 0.20 TCGA-2W-A8YY-01 X 48761993 48761993 G A SLC35A2 Intron 0.33 TCGA-2W-A8YY-01 X 48763713 48763713 G T SLC35A2 Missense_Mutation p.L128I 0.31 deleterious(0) probably_damaging(0.954) TCGA-2W-A8YY-01 X 48771367 48771367 G A PIM2 3'UTR 0.14 TCGA-2W-A8YY-01 X 48780032 48780032 C T OTUD5 3'UTR 0.27 TCGA-2W-A8YY-01 X 48780167 48780167 C T OTUD5 3'UTR 0.32 TCGA-2W-A8YY-01 X 48781158 48781158 G T OTUD5 Missense_Mutation p.L484I 0.36 tolerated(0.17) benign(0.016) TCGA-2W-A8YY-01 X 48792257 48792257 C A OTUD5 Missense_Mutation p.E241D 0.13 tolerated(0.72) benign(0.01) TCGA-2W-A8YY-01 X 48822576 48822576 C T KCND1 Missense_Mutation p.R535H 0.37 tolerated_low_confidence(0.06) probably_damaging(0.981) TCGA-2W-A8YY-01 X 48822639 48822639 C T KCND1 Missense_Mutation p.R514H 0.35 tolerated_low_confidence(0.52) benign(0.059) TCGA-2W-A8YY-01 X 48822648 48822648 C T KCND1 Missense_Mutation p.R511H 0.36 tolerated_low_confidence(0.53) possibly_damaging(0.841) TCGA-2W-A8YY-01 X 48832431 48832431 G A GRIPAP1 Silent p.I759I 0.24 TCGA-2W-A8YY-01 X 48886265 48886265 C T TFE3 3'UTR 0.32 TCGA-2W-A8YY-01 X 48887603 48887603 G A TFE3 3'UTR 0.45 TCGA-2W-A8YY-01 X 48887624 48887624 C T TFE3 3'UTR 0.31 TCGA-2W-A8YY-01 X 48889051 48889051 C T TFE3 Missense_Mutation p.R382H 0.34 deleterious(0) benign(0.059) TCGA-2W-A8YY-01 X 48895567 48895567 C T TFE3 Missense_Mutation p.G285R 0.44 tolerated(0.19) probably_damaging(0.956) TCGA-2W-A8YY-01 X 48895920 48895920 C T TFE3 Silent p.A194A 0.09 TCGA-2W-A8YY-01 X 48925936 48925936 C T CCDC120 Intron 0.45 TCGA-2W-A8YY-01 X 48926475 48926475 G A CCDC120 3'UTR 0.31 TCGA-2W-A8YY-01 X 48933405 48933405 G A AF196779.12 Missense_Mutation p.A73V 0.10 tolerated(0.09) benign(0.174) TCGA-2W-A8YY-01 X 48970479 48970479 A G GPKOW 3'UTR 0.36 TCGA-2W-A8YY-01 X 49021018 49021018 G T MAGIX Intron 0.46 TCGA-2W-A8YY-01 X 49031328 49031328 G T PLP2 3'UTR 0.46 TCGA-2W-A8YY-01 X 49033456 49033456 G A PRICKLE3 Missense_Mutation p.R351C 0.30 tolerated(0.13) benign(0.072) TCGA-2W-A8YY-01 X 49088289 49088289 T C CACNA1F Silent p.A42A 0.32 TCGA-2W-A8YY-01 X 49107977 49107977 C T FOXP3 Intron 0.21 TCGA-2W-A8YY-01 X 49143521 49143521 C T PPP1R3F Missense_Mutation p.A790V 0.43 tolerated_low_confidence(0.41) benign(0.01) TCGA-2W-A8YY-01 X 49143626 49143626 G A PPP1R3F 3'UTR 0.26 TCGA-2W-A8YY-01 X 49458707 49458707 G A PAGE1 Missense_Mutation p.A54V 0.32 tolerated(1) probably_damaging(0.918) TCGA-2W-A8YY-01 X 49646287 49646287 G A USP27X 3'UTR 0.34 TCGA-2W-A8YY-01 X 49857984 49857984 T C CLCN5 3'UTR 0.22 TCGA-2W-A8YY-01 X 49955495 49955495 G A AKAP4 3'UTR 0.31 TCGA-2W-A8YY-01 X 50658936 50658936 G A BMP15 Missense_Mutation p.D170N 0.50 tolerated(0.27) benign(0.002) TCGA-2W-A8YY-01 X 51150178 51150178 C T CXorf67 Missense_Mutation p.R104C 0.34 tolerated(0.17) benign(0.002) TCGA-2W-A8YY-01 X 51486610 51486610 C T GSPT2 5'UTR 0.17 TCGA-2W-A8YY-01 X 51486806 51486806 C T GSPT2 Silent p.S28S 0.31 TCGA-2W-A8YY-01 X 51486970 51486970 C T GSPT2 Missense_Mutation p.P83L 0.24 tolerated_low_confidence(0.16) benign(0) TCGA-2W-A8YY-01 X 51486993 51486993 G A GSPT2 Missense_Mutation p.E91K 0.46 tolerated_low_confidence(0.17) benign(0.017) TCGA-2W-A8YY-01 X 52673537 52673537 C T SSX7 3'UTR 0.43 TCGA-2W-A8YY-01 X 52842239 52842239 G A XAGE5 Missense_Mutation p.E50K 0.36 tolerated(0.28) probably_damaging(0.989) TCGA-2W-A8YY-01 X 53106225 53106225 C T GPR173 Missense_Mutation p.A141V 0.45 tolerated(0.5) benign(0.014) TCGA-2W-A8YY-01 X 53106648 53106648 A G GPR173 Missense_Mutation p.K282R 0.35 tolerated(0.06) benign(0.071) TCGA-2W-A8YY-01 X 53117392 53117392 G A TSPYL2 3'UTR 0.38 TCGA-2W-A8YY-01 X 53221950 53221950 G A KDM5C 3'UTR 0.36 TCGA-2W-A8YY-01 X 53224521 53224521 C T KDM5C Silent p.G1064G 0.38 TCGA-2W-A8YY-01 X 53226042 53226042 C T KDM5C Missense_Mutation p.R936H 0.46 tolerated(0.08) benign(0.007) TCGA-2W-A8YY-01 X 53227954 53227954 C T KDM5C Missense_Mutation p.R787Q 0.38 tolerated(0.21) benign(0.067) TCGA-2W-A8YY-01 X 53247486 53247486 C A KDM5C Missense_Mutation p.R108L 0.46 deleterious(0) possibly_damaging(0.869) TCGA-2W-A8YY-01 X 53262614 53262614 C T IQSEC2 3'UTR 0.51 TCGA-2W-A8YY-01 X 53262847 53262847 C T IQSEC2 3'UTR 0.11 TCGA-2W-A8YY-01 X 53264304 53264304 C T IQSEC2 Silent p.P1188P 0.52 TCGA-2W-A8YY-01 X 53276158 53276158 G A IQSEC2 Silent p.N914N 0.54 TCGA-2W-A8YY-01 X 53278049 53278049 A G IQSEC2 Silent p.G771G 0.35 TCGA-2W-A8YY-01 X 53280118 53280118 G T IQSEC2 Missense_Mutation p.A547E 0.55 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-2W-A8YY-01 X 53280128 53280128 C T IQSEC2 Missense_Mutation p.E544K 0.55 deleterious_low_confidence(0) benign(0.357) TCGA-2W-A8YY-01 X 53280167 53280167 G A IQSEC2 Nonsense_Mutation p.R531* 0.46 TCGA-2W-A8YY-01 X 53284029 53284029 G A IQSEC2 Missense_Mutation p.R362C 0.39 deleterious(0.04) probably_damaging(0.921) TCGA-2W-A8YY-01 X 53349744 53349744 C T IQSEC2 Missense_Mutation p.G193D 0.35 tolerated_low_confidence(0.06) benign(0.005) TCGA-2W-A8YY-01 X 53431833 53431833 G A SMC1A Intron 0.40 TCGA-2W-A8YY-01 X 53438749 53438749 G A SMC1A Missense_Mutation p.R406C 0.37 deleterious(0) probably_damaging(0.959) TCGA-2W-A8YY-01 X 53439855 53439855 C A SMC1A Missense_Mutation p.E283D 0.33 tolerated(0.23) benign(0.005) TCGA-2W-A8YY-01 X 53459200 53459200 G A HSD17B10 Missense_Mutation p.L118F 0.41 deleterious(0.02) benign(0.388) TCGA-2W-A8YY-01 X 53559764 53559764 G A HUWE1 3'UTR 0.33 TCGA-2W-A8YY-01 X 53576125 53576125 G A HUWE1 Missense_Mutation p.S3277L 0.11 benign(0.307) TCGA-2W-A8YY-01 X 53587305 53587305 G T HUWE1 Missense_Mutation p.S2527Y 0.13 benign(0.068) TCGA-2W-A8YY-01 X 53630342 53630342 A G HUWE1 Missense_Mutation p.C955R 0.38 possibly_damaging(0.569) TCGA-2W-A8YY-01 X 53642772 53642772 C A HUWE1 Missense_Mutation p.S661I 0.31 possibly_damaging(0.865) TCGA-2W-A8YY-01 X 53966654 53966654 C T PHF8 Missense_Mutation p.R1018Q 0.11 deleterious(0.01) possibly_damaging(0.591) TCGA-2W-A8YY-01 X 53970644 53970644 G A PHF8 Missense_Mutation p.R894C 0.45 deleterious(0) possibly_damaging(0.817) TCGA-2W-A8YY-01 X 54020083 54020083 T C PHF8 Missense_Mutation p.D562G 0.45 deleterious(0.01) benign(0.004) TCGA-2W-A8YY-01 X 54044151 54044151 A G PHF8 Silent p.L169L 0.44 TCGA-2W-A8YY-01 X 54098760 54098760 G A FAM120C 3'UTR 0.36 TCGA-2W-A8YY-01 X 54117821 54117821 C T FAM120C Missense_Mutation p.R784H 0.27 deleterious(0) probably_damaging(0.966) TCGA-2W-A8YY-01 X 54224728 54224728 C A WNK3 3'UTR 0.16 TCGA-2W-A8YY-01 X 54225073 54225073 G A WNK3 Missense_Mutation p.T1696I 0.35 deleterious(0) possibly_damaging(0.846) TCGA-2W-A8YY-01 X 54263939 54263940 - A WNK3 Frame_Shift_Ins p.G1354Wfs*10 0.11 TCGA-2W-A8YY-01 X 54335593 54335593 G T WNK3 Missense_Mutation p.S289Y 0.09 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 54359810 54359810 T C WNK3 Silent p.R99R 0.32 TCGA-2W-A8YY-01 X 54470546 54470546 G T TSR2 Missense_Mutation p.A124S 0.41 deleterious(0.05) benign(0.078) TCGA-2W-A8YY-01 X 54475395 54475395 A C FGD1 Silent p.V760V 0.43 TCGA-2W-A8YY-01 X 54475672 54475672 C T FGD1 Silent p.T726T 0.18 TCGA-2W-A8YY-01 X 54491964 54491964 C T FGD1 Missense_Mutation p.R519H 0.33 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 X 54581037 54581037 C T GNL3L Missense_Mutation p.T453M 0.41 tolerated(0.33) benign(0.002) TCGA-2W-A8YY-01 X 54585017 54585017 C T GNL3L Missense_Mutation p.T532M 0.17 tolerated(0.12) benign(0.068) TCGA-2W-A8YY-01 X 54777465 54777465 C A ITIH6 Missense_Mutation p.G1234V 0.24 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 X 54817465 54817465 C A ITIH6 Nonsense_Mutation p.E141* 0.33 TCGA-2W-A8YY-01 X 54836237 54836237 C T MAGED2 Missense_Mutation p.P43L 0.35 deleterious_low_confidence(0.05) benign(0.004) TCGA-2W-A8YY-01 X 54842047 54842047 G A MAGED2 Missense_Mutation p.A585T 0.32 tolerated_low_confidence(0.14) unknown(0) TCGA-2W-A8YY-01 X 55030265 55030265 C A APEX2 Silent p.A201A 0.15 TCGA-2W-A8YY-01 X 55478986 55478986 A G MAGEH1 Missense_Mutation p.E60G 0.40 deleterious_low_confidence(0) benign(0.027) TCGA-2W-A8YY-01 X 55515089 55515089 G T USP51 Missense_Mutation p.S95Y 0.44 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 X 55515174 55515174 C T USP51 Missense_Mutation p.A67T 0.10 tolerated_low_confidence(0.21) unknown(0) TCGA-2W-A8YY-01 X 55650495 55650495 C T FOXR2 Silent p.D117D 0.40 TCGA-2W-A8YY-01 X 55651486 55651486 C A FOXR2 3'UTR 0.43 TCGA-2W-A8YY-01 X 55748704 55748704 G A RRAGB Missense_Mutation p.R71H 0.28 deleterious(0) benign(0.249) TCGA-2W-A8YY-01 X 56259719 56259719 C T KLF8 5'UTR 0.16 TCGA-2W-A8YY-01 X 56592711 56592711 G A UBQLN2 3'UTR 0.38 TCGA-2W-A8YY-01 X 57618511 57618511 C T ZXDB Silent p.R10R 0.55 TCGA-2W-A8YY-01 X 57619465 57619465 C T ZXDB Silent p.H328H 0.37 TCGA-2W-A8YY-01 X 57619725 57619725 G A ZXDB Missense_Mutation p.R415H 0.35 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 57619818 57619818 G A ZXDB Missense_Mutation p.R446Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 X 57619908 57619908 G T ZXDB Missense_Mutation p.R476I 0.25 deleterious(0) possibly_damaging(0.712) TCGA-2W-A8YY-01 X 57934557 57934557 C A ZXDA Missense_Mutation p.Q766H 0.50 tolerated(0.05) benign(0.406) TCGA-2W-A8YY-01 X 57935962 57935962 C T ZXDA Missense_Mutation p.R298K 0.47 deleterious(0.02) probably_damaging(0.977) TCGA-2W-A8YY-01 X 57936020 57936020 C T ZXDA Missense_Mutation p.A279T 0.51 tolerated(0.35) benign(0.071) TCGA-2W-A8YY-01 X 5811200 5811200 C T NLGN4X Silent p.R703R 0.11 TCGA-2W-A8YY-01 X 5811384 5811384 G A NLGN4X Missense_Mutation p.T642I 0.40 tolerated(0.17) benign(0.002) TCGA-2W-A8YY-01 X 5950746 5950746 C T NLGN4X Intron 0.33 TCGA-2W-A8YY-01 X 6069120 6069120 C T NLGN4X Missense_Mutation p.A130T 0.42 tolerated(0.56) benign(0.262) TCGA-2W-A8YY-01 X 62569126 62569126 G A SPIN4 3'UTR 0.29 TCGA-2W-A8YY-01 X 62855163 62855164 - AG ARHGEF9 3'UTR 0.12 TCGA-2W-A8YY-01 X 62926236 62926236 G A ARHGEF9 Missense_Mutation p.R95W 0.11 tolerated(0.12) benign(0.356) TCGA-2W-A8YY-01 X 62952015 62952015 C T ARHGEF9 Intron 0.33 TCGA-2W-A8YY-01 X 62974234 62974234 C T ARHGEF9 5'UTR 0.27 TCGA-2W-A8YY-01 X 63005021 63005021 T C MIR1468 3'Flank 0.07 TCGA-2W-A8YY-01 X 63410347 63410347 C T AMER1 Nonsense_Mutation p.W940* 0.35 TCGA-2W-A8YY-01 X 63410400 63410400 C T AMER1 Missense_Mutation p.A923T 0.10 deleterious(0.04) benign(0.01) TCGA-2W-A8YY-01 X 63410712 63410712 C T AMER1 Missense_Mutation p.E819K 0.43 deleterious(0) probably_damaging(0.998) TCGA-2W-A8YY-01 X 63411966 63411966 C T AMER1 Missense_Mutation p.E401K 0.44 tolerated(0.46) possibly_damaging(0.677) TCGA-2W-A8YY-01 X 63557202 63557202 G A MTMR8 Silent p.C349C 0.27 TCGA-2W-A8YY-01 X 64137547 64137547 A G ZC4H2 3'UTR 0.40 TCGA-2W-A8YY-01 X 64196233 64196233 A G ZC4H2 Missense_Mutation p.C9R 0.18 tolerated(0.2) benign(0.007) TCGA-2W-A8YY-01 X 64196242 64196242 C A ZC4H2 Nonsense_Mutation p.E6* 0.53 TCGA-2W-A8YY-01 X 64722265 64722265 C T ZC3H12B Nonsense_Mutation p.R563* 0.44 TCGA-2W-A8YY-01 X 64724155 64724155 C T ZC3H12B 3'UTR 0.35 TCGA-2W-A8YY-01 X 64725337 64725337 C T ZC3H12B 3'UTR 0.18 TCGA-2W-A8YY-01 X 64726059 64726059 G A ZC3H12B 3'UTR 0.52 TCGA-2W-A8YY-01 X 64726571 64726571 T - ZC3H12B 3'UTR 0.24 TCGA-2W-A8YY-01 X 64734848 64734848 C T LAS1L Missense_Mutation p.V645M 0.23 deleterious(0.01) benign(0.414) TCGA-2W-A8YY-01 X 64754363 64754363 C A LAS1L Missense_Mutation p.S78I 0.35 deleterious(0) possibly_damaging(0.865) TCGA-2W-A8YY-01 X 64949429 64949429 G A MSN Missense_Mutation p.E108K 0.30 tolerated(0.09) probably_damaging(0.976) TCGA-2W-A8YY-01 X 64955168 64955168 C T MSN Missense_Mutation p.R279W 0.10 deleterious(0.03) possibly_damaging(0.456) TCGA-2W-A8YY-01 X 64957053 64957053 G T MSN Missense_Mutation p.Q368H 0.26 deleterious(0.03) probably_damaging(0.987) TCGA-2W-A8YY-01 X 64958874 64958874 C T MSN Silent p.L463L 0.47 TCGA-2W-A8YY-01 X 64959860 64959860 G T MSN 3'UTR 0.35 TCGA-2W-A8YY-01 X 65238737 65238737 C T VSIG4 3'Flank 0.45 TCGA-2W-A8YY-01 X 65238756 65238756 G A VSIG4 3'Flank 0.32 TCGA-2W-A8YY-01 X 65242167 65242167 G A VSIG4 Silent p.L380L 0.33 TCGA-2W-A8YY-01 X 65242174 65242174 G A VSIG4 Silent p.Y377Y 0.49 TCGA-2W-A8YY-01 X 65253419 65253419 C T VSIG4 Silent p.L103L 0.31 TCGA-2W-A8YY-01 X 65392233 65392233 G T HEPH Silent p.R122R 0.11 TCGA-2W-A8YY-01 X 65392354 65392354 G A HEPH Missense_Mutation p.D163N 0.38 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 65415028 65415028 G A HEPH Silent p.G540G 0.43 TCGA-2W-A8YY-01 X 65825013 65825013 C T EDA2R Missense_Mutation p.R48K 0.32 tolerated(0.59) benign(0.045) TCGA-2W-A8YY-01 X 65835862 65835862 T C EDA2R Translation_Start_Site p.M1? 0.36 tolerated(0.05) probably_damaging(0.994) TCGA-2W-A8YY-01 X 66765573 66765573 G T AR Missense_Mutation p.Q195H 0.09 tolerated_low_confidence(0.13) benign(0.004) TCGA-2W-A8YY-01 X 66943638 66943638 G T AR Missense_Mutation p.K906N 0.39 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 67316726 67316726 C T OPHN1 Missense_Mutation p.E558K 0.28 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 X 67718948 67718948 G A YIPF6 Missense_Mutation p.A14T 0.28 tolerated(0.23) benign(0.001) TCGA-2W-A8YY-01 X 67941446 67941446 G T STARD8 Nonsense_Mutation p.E773* 0.30 TCGA-2W-A8YY-01 X 67942414 67942414 C T STARD8 Missense_Mutation p.R909C 0.40 deleterious(0.02) benign(0.021) TCGA-2W-A8YY-01 X 68061652 68061652 G A EFNB1 3'UTR 0.31 TCGA-2W-A8YY-01 X 68381999 68381999 G A PJA1 Silent p.C361C 0.39 TCGA-2W-A8YY-01 X 68382026 68382026 C T PJA1 Silent p.T352T 0.11 TCGA-2W-A8YY-01 X 68382610 68382610 C T PJA1 Missense_Mutation p.A158T 0.44 tolerated(0.14) benign(0.184) TCGA-2W-A8YY-01 X 68749553 68749553 C T FAM155B Silent p.F391F 0.32 TCGA-2W-A8YY-01 X 68750854 68750854 C A FAM155B 3'UTR 0.30 TCGA-2W-A8YY-01 X 68751889 68751889 C T FAM155B 3'UTR 0.29 TCGA-2W-A8YY-01 X 69259047 69259047 G T EDA 3'UTR 0.41 TCGA-2W-A8YY-01 X 69282425 69282425 C T OTUD6A Silent p.R17R 0.29 TCGA-2W-A8YY-01 X 69385884 69385884 A C IGBP1 3'UTR 0.33 TCGA-2W-A8YY-01 X 69506781 69506781 C T PDZD11 3'UTR 0.29 TCGA-2W-A8YY-01 X 69507147 69507147 G A PDZD11 Missense_Mutation p.R123C 0.35 tolerated(0.14) benign(0.005) TCGA-2W-A8YY-01 X 69510346 69510346 C T KIF4A Missense_Mutation p.A13V 0.30 deleterious(0.02) benign(0.334) TCGA-2W-A8YY-01 X 69646556 69646556 C A GDPD2 Missense_Mutation p.P174H 0.35 deleterious(0.02) possibly_damaging(0.77) TCGA-2W-A8YY-01 X 6967514 6967514 A G HDHD1 3'Flank 0.42 TCGA-2W-A8YY-01 X 69713287 69713287 G A DLG3 Intron 0.31 TCGA-2W-A8YY-01 X 69890242 69890242 C T TEX11 Silent p.L470L 0.31 TCGA-2W-A8YY-01 X 70280873 70280873 C T SNX12 Missense_Mutation p.R161H 0.30 deleterious(0.01) possibly_damaging(0.54) TCGA-2W-A8YY-01 X 70288096 70288096 C T SNX12 Missense_Mutation p.D21N 0.38 deleterious(0) possibly_damaging(0.51) TCGA-2W-A8YY-01 X 70321085 70321085 C T FOXO4 Silent p.T335T 0.31 TCGA-2W-A8YY-01 X 70327660 70327660 G A IL2RG Missense_Mutation p.P346S 0.32 tolerated_low_confidence(0.14) benign(0.011) TCGA-2W-A8YY-01 X 70342400 70342400 C T MED12 Missense_Mutation p.R431W 0.43 probably_damaging(1) TCGA-2W-A8YY-01 X 70345326 70345327 - A MED12 Frame_Shift_Ins p.G786Rfs*6 0.23 TCGA-2W-A8YY-01 X 70354262 70354262 C T MED12 Missense_Mutation p.A1558V 0.31 possibly_damaging(0.574) TCGA-2W-A8YY-01 X 70357117 70357117 C A MED12 Missense_Mutation p.L1878M 0.33 benign(0.081) TCGA-2W-A8YY-01 X 70443653 70443653 A G GJB1 Silent p.R32R 0.33 TCGA-2W-A8YY-01 X 70459591 70459591 G A ZMYM3 3'UTR 0.43 TCGA-2W-A8YY-01 X 70460858 70460858 G A ZMYM3 Missense_Mutation p.R1341C 0.41 deleterious(0) probably_damaging(0.938) TCGA-2W-A8YY-01 X 70463798 70463798 C T ZMYM3 Missense_Mutation p.A1105T 0.08 tolerated(0.09) possibly_damaging(0.521) TCGA-2W-A8YY-01 X 70472549 70472549 C A ZMYM3 Missense_Mutation p.S186I 0.28 tolerated_low_confidence(0.05) benign(0.367) TCGA-2W-A8YY-01 X 70524120 70524120 G A ITGB1BP2 Silent p.A241A 0.33 TCGA-2W-A8YY-01 X 70612786 70612786 G A TAF1 Missense_Mutation p.R1018H 0.09 deleterious(0) probably_damaging(0.984) TCGA-2W-A8YY-01 X 70627856 70627856 G T TAF1 Missense_Mutation p.K1433N 0.09 deleterious(0) probably_damaging(0.965) TCGA-2W-A8YY-01 X 70783296 70783296 A G OGT Missense_Mutation p.I795V 0.36 tolerated(0.63) benign(0.001) TCGA-2W-A8YY-01 X 70794533 70794533 C T OGT 3'UTR 0.41 TCGA-2W-A8YY-01 X 70795632 70795633 - T OGT 3'UTR 0.33 TCGA-2W-A8YY-01 X 70812402 70812402 C T ACRC Missense_Mutation p.A41V 0.32 benign(0.016) TCGA-2W-A8YY-01 X 70823745 70823745 C T ACRC Silent p.D206D 0.35 TCGA-2W-A8YY-01 X 70824187 70824187 C T ACRC Silent p.L354L 0.41 TCGA-2W-A8YY-01 X 70824498 70824498 G A ACRC Silent p.A457A 0.29 TCGA-2W-A8YY-01 X 70836266 70836266 G A CXCR3 Silent p.R399R 0.40 TCGA-2W-A8YY-01 X 71350701 71350701 G T RGAG4 Silent p.G230G 0.40 TCGA-2W-A8YY-01 X 71351475 71351475 C T RGAG4 5'UTR 0.27 TCGA-2W-A8YY-01 X 71359868 71359868 A G NHSL2 Missense_Mutation p.T824A 0.37 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 71360208 71360208 G A NHSL2 Missense_Mutation p.S937N 0.31 tolerated(0.15) benign(0.027) TCGA-2W-A8YY-01 X 7137578 7137578 T C STS 5'UTR 0.47 TCGA-2W-A8YY-01 X 71427381 71427381 A G ERCC6L Silent p.D412D 0.46 TCGA-2W-A8YY-01 X 71427862 71427862 C T ERCC6L Missense_Mutation p.R252H 0.29 deleterious(0) probably_damaging(0.962) TCGA-2W-A8YY-01 X 71493966 71493966 G A RPS4X Intron 0.38 TCGA-2W-A8YY-01 X 71521898 71521898 T G CITED1 Missense_Mutation p.H112P 0.35 tolerated(0.24) benign(0.006) TCGA-2W-A8YY-01 X 71549387 71549387 A - HDAC8 3'UTR 0.31 TCGA-2W-A8YY-01 X 71681933 71681933 G A HDAC8 Missense_Mutation p.A309V 0.44 tolerated(0.19) benign(0.217) TCGA-2W-A8YY-01 X 7177635 7177635 G A STS Missense_Mutation p.V215I 0.33 tolerated(0.53) benign(0.002) TCGA-2W-A8YY-01 X 71819676 71819676 G A PHKA1 Intron 0.42 TCGA-2W-A8YY-01 X 72297787 72297787 C T PABPC1L2A 3'UTR 0.15 TCGA-2W-A8YY-01 X 72667163 72667163 G A CDX4 Missense_Mutation p.G25D 0.23 tolerated(0.65) possibly_damaging(0.597) TCGA-2W-A8YY-01 X 72797266 72797266 A G CHIC1 Missense_Mutation p.D107G 0.12 deleterious(0) possibly_damaging(0.848) TCGA-2W-A8YY-01 X 73042424 73042424 C T XIST RNA 0.56 TCGA-2W-A8YY-01 X 73043745 73043745 C T XIST RNA 0.35 TCGA-2W-A8YY-01 X 73046072 73046072 C A XIST RNA 0.33 TCGA-2W-A8YY-01 X 73046888 73046888 C T XIST RNA 0.33 TCGA-2W-A8YY-01 X 73061450 73061450 T C XIST RNA 0.19 TCGA-2W-A8YY-01 X 73062774 73062774 C T XIST RNA 0.53 TCGA-2W-A8YY-01 X 73062930 73062930 C T XIST RNA 0.41 TCGA-2W-A8YY-01 X 73063891 73063891 C A XIST RNA 0.35 TCGA-2W-A8YY-01 X 73065170 73065170 G A XIST RNA 0.23 TCGA-2W-A8YY-01 X 73065657 73065657 T C XIST RNA 0.57 TCGA-2W-A8YY-01 X 73065965 73065965 C T XIST RNA 0.44 TCGA-2W-A8YY-01 X 73067738 73067738 G A XIST RNA 0.42 TCGA-2W-A8YY-01 X 73071310 73071310 C T XIST RNA 0.44 TCGA-2W-A8YY-01 X 73071618 73071618 G A XIST RNA 0.51 TCGA-2W-A8YY-01 X 73071762 73071762 A - XIST RNA 0.39 TCGA-2W-A8YY-01 X 73524122 73524122 C T ZCCHC13 Silent p.F7F 0.30 TCGA-2W-A8YY-01 X 73524180 73524180 C T ZCCHC13 Nonsense_Mutation p.R27* 0.26 TCGA-2W-A8YY-01 X 73744222 73744222 G A SLC16A2 Missense_Mutation p.G202R 0.30 deleterious(0) probably_damaging(0.989) TCGA-2W-A8YY-01 X 73752074 73752074 G A SLC16A2 3'UTR 0.37 TCGA-2W-A8YY-01 X 73954614 73954614 C T KIAA2022 3'UTR 0.47 TCGA-2W-A8YY-01 X 73956530 73956530 A T KIAA2022 3'UTR 0.46 TCGA-2W-A8YY-01 X 73958867 73958867 T - KIAA2022 3'UTR 0.28 TCGA-2W-A8YY-01 X 73960704 73960704 C T KIAA2022 Missense_Mutation p.A1230T 0.35 tolerated(0.2) benign(0.035) TCGA-2W-A8YY-01 X 74282266 74282266 C T ABCB7 Missense_Mutation p.G612E 0.28 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 74376022 74376022 C T ABCB7 Missense_Mutation p.R29Q 0.29 tolerated_low_confidence(0.2) benign(0.012) TCGA-2W-A8YY-01 X 75392828 75392828 C T PBDC1 5'UTR 0.37 TCGA-2W-A8YY-01 X 75648463 75648463 A G MAGEE1 Missense_Mutation p.Q47R 0.09 tolerated_low_confidence(0.23) benign(0.001) TCGA-2W-A8YY-01 X 75648962 75648962 G A MAGEE1 Silent p.P213P 0.40 TCGA-2W-A8YY-01 X 75649080 75649080 G T MAGEE1 Missense_Mutation p.D253Y 0.15 deleterious_low_confidence(0.01) benign(0.015) TCGA-2W-A8YY-01 X 75649650 75649650 G A MAGEE1 Missense_Mutation p.V443M 0.37 deleterious(0.04) benign(0.197) TCGA-2W-A8YY-01 X 75651695 75651695 G A MAGEE1 3'UTR 0.43 TCGA-2W-A8YY-01 X 76709737 76709737 G T FGF16 Nonsense_Mutation p.E31* 0.33 TCGA-2W-A8YY-01 X 76763325 76763325 T G ATRX 3'UTR 0.47 TCGA-2W-A8YY-01 X 76763369 76763369 G A ATRX 3'UTR 0.36 TCGA-2W-A8YY-01 X 76907720 76907720 G A ATRX Missense_Mutation p.R1481W 0.33 probably_damaging(0.999) TCGA-2W-A8YY-01 X 76937312 76937312 T A ATRX Missense_Mutation p.T1146S 0.29 benign(0.001) TCGA-2W-A8YY-01 X 76937724 76937724 C A ATRX Missense_Mutation p.Q1008H 0.24 benign(0.002) TCGA-2W-A8YY-01 X 77086302 77086302 C A MAGT1 Missense_Mutation p.S363I 0.31 deleterious(0) possibly_damaging(0.741) TCGA-2W-A8YY-01 X 77218164 77218164 C T ATP7A Intron 0.09 TCGA-2W-A8YY-01 X 77224078 77224078 A G PGAM4 3'UTR 0.21 TCGA-2W-A8YY-01 X 77244753 77244753 C T ATP7A Missense_Mutation p.T212I 0.23 tolerated(0.3) benign(0.385) TCGA-2W-A8YY-01 X 77284779 77284779 G A ATP7A Silent p.T983T 0.50 TCGA-2W-A8YY-01 X 77289288 77289288 G A ATP7A Silent p.S1160S 0.45 TCGA-2W-A8YY-01 X 77301022 77301022 G A ATP7A Missense_Mutation p.M1393I 0.47 deleterious(0) possibly_damaging(0.499) TCGA-2W-A8YY-01 X 77302187 77302187 C A ATP7A 3'UTR 0.46 TCGA-2W-A8YY-01 X 77302662 77302662 C A ATP7A 3'UTR 0.26 TCGA-2W-A8YY-01 X 77913684 77913684 C A ZCCHC5 Missense_Mutation p.K78N 0.36 tolerated(0.13) benign(0.002) TCGA-2W-A8YY-01 X 7811706 7811706 G A VCX Silent p.P90P 0.12 TCGA-2W-A8YY-01 X 7811905 7811905 G A VCX Missense_Mutation p.E157K 0.29 tolerated(0.14) unknown(0) TCGA-2W-A8YY-01 X 78216500 78216500 G A P2RY10 Silent p.G161G 0.39 TCGA-2W-A8YY-01 X 78216809 78216809 T G P2RY10 Missense_Mutation p.I264M 0.45 tolerated(0.22) possibly_damaging(0.482) TCGA-2W-A8YY-01 X 78427354 78427354 A C GPR174 Missense_Mutation p.N284H 0.37 deleterious(0.01) probably_damaging(1) TCGA-2W-A8YY-01 X 7880109 7880109 G A PNPLA4 Missense_Mutation p.P146L 0.41 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 79277857 79277857 C T TBX22 Missense_Mutation p.A30V 0.35 tolerated(0.16) benign(0.069) TCGA-2W-A8YY-01 X 79279657 79279657 G A TBX22 Missense_Mutation p.R151H 0.34 deleterious(0) probably_damaging(0.993) TCGA-2W-A8YY-01 X 79283547 79283547 T - TBX22 Frame_Shift_Del p.F308Lfs*18 0.31 TCGA-2W-A8YY-01 X 79698503 79698503 G T FAM46D Missense_Mutation p.K155N 0.40 deleterious(0) probably_damaging(0.997) TCGA-2W-A8YY-01 X 79699493 79699493 A C FAM46D 3'UTR 0.12 TCGA-2W-A8YY-01 X 79700691 79700691 C T FAM46D 3'UTR 0.08 TCGA-2W-A8YY-01 X 79999704 79999704 G T BRWD3 Missense_Mutation p.L214I 0.41 deleterious(0) probably_damaging(0.994) TCGA-2W-A8YY-01 X 80001114 80001114 G T BRWD3 Missense_Mutation p.S182Y 0.36 deleterious(0) probably_damaging(0.967) TCGA-2W-A8YY-01 X 80001124 80001124 G A BRWD3 Missense_Mutation p.H179Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-2W-A8YY-01 X 80377067 80377067 G A HMGN5 5'UTR 0.36 TCGA-2W-A8YY-01 X 80532528 80532528 A C SH3BGRL Missense_Mutation p.K31Q 0.44 deleterious(0.04) possibly_damaging(0.587) TCGA-2W-A8YY-01 X 82763742 82763742 C A POU3F4 Missense_Mutation p.P137H 0.56 deleterious(0) benign(0.013) TCGA-2W-A8YY-01 X 83128214 83128214 A G CYLC1 Silent p.S166S 0.53 TCGA-2W-A8YY-01 X 83351266 83351266 C T RPS6KA6 Missense_Mutation p.R636H 0.39 deleterious(0.01) benign(0.277) TCGA-2W-A8YY-01 X 83442891 83442891 G T RPS6KA6 Missense_Mutation p.P6H 0.39 tolerated_low_confidence(0.57) benign(0.085) TCGA-2W-A8YY-01 X 83442904 83442904 G A RPS6KA6 Silent p.L2L 0.09 TCGA-2W-A8YY-01 X 84342667 84342667 T G APOOL Missense_Mutation p.Y264D 0.50 deleterious(0.01) possibly_damaging(0.473) TCGA-2W-A8YY-01 X 84358880 84358880 T C SATL1 Silent p.L561L 0.09 TCGA-2W-A8YY-01 X 84527387 84527387 G A ZNF711 3'UTR 0.54 TCGA-2W-A8YY-01 X 84562189 84562189 C A POF1B Missense_Mutation p.A382S 0.33 deleterious(0.02) possibly_damaging(0.542) TCGA-2W-A8YY-01 X 84614625 84614625 G A POF1B Missense_Mutation p.S123F 0.37 tolerated_low_confidence(0.08) benign(0.081) TCGA-2W-A8YY-01 X 85118069 85118069 G A CHM 3'UTR 0.45 TCGA-2W-A8YY-01 X 85118103 85118103 T C CHM 3'UTR 0.26 TCGA-2W-A8YY-01 X 85211263 85211263 C T CHM Missense_Mutation p.G354D 0.40 deleterious(0) probably_damaging(1) TCGA-2W-A8YY-01 X 85218874 85218874 C T CHM Silent p.A166A 0.11 TCGA-2W-A8YY-01 X 85236750 85236750 C A CHM Missense_Mutation p.K60N 0.45 deleterious(0.04) possibly_damaging(0.826) TCGA-2W-A8YY-01 X 8538713 8538713 G A KAL1 Missense_Mutation p.R297W 0.36 deleterious(0.01) benign(0.01) TCGA-2W-A8YY-01 X 85403703 85403703 C T DACH2 Missense_Mutation p.P27S 0.30 tolerated(0.13) benign(0.001) TCGA-2W-A8YY-01 X 85950173 85950173 C T DACH2 Silent p.L308L 0.43 TCGA-2W-A8YY-01 X 86773232 86773232 G A KLHL4 Silent p.E112E 0.08 TCGA-2W-A8YY-01 X 8764320 8764320 T - FAM9A Frame_Shift_Del p.K159Nfs*3 0.44 TCGA-2W-A8YY-01 X 90690786 90690786 G A PABPC5 Silent p.A70A 0.17 TCGA-2W-A8YY-01 X 90691651 90691651 G A PABPC5 Missense_Mutation p.D359N 0.39 deleterious(0) benign(0.034) TCGA-2W-A8YY-01 X 90692416 90692416 G T PABPC5 3'UTR 0.26 TCGA-2W-A8YY-01 X 91132915 91132915 G A PCDH11X Missense_Mutation p.S559N 0.36 tolerated(0.37) benign(0.008) TCGA-2W-A8YY-01 X 91133371 91133371 T C PCDH11X Missense_Mutation p.V711A 0.20 deleterious(0) benign(0.217) TCGA-2W-A8YY-01 X 91873311 91873311 G A PCDH11X Missense_Mutation p.C1139Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-2W-A8YY-01 X 91873539 91873539 A G PCDH11X Missense_Mutation p.Q1215R 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-2W-A8YY-01 X 92927045 92927045 C T NAP1L3 Missense_Mutation p.R420H 0.41 tolerated(0.27) benign(0) TCGA-2W-A8YY-01 X 92927921 92927921 G A NAP1L3 Missense_Mutation p.A128V 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-2W-A8YY-01 X 92964451 92964451 G A FAM133A Missense_Mutation p.M11I 0.32 tolerated_low_confidence(0.12) benign(0.12) TCGA-2W-A8YY-01 X 95940063 95940063 G T DIAPH2 Missense_Mutation p.E2D 0.35 deleterious_low_confidence(0) unknown(0) TCGA-2W-A8YY-01 X 96192323 96192323 G A DIAPH2 Missense_Mutation p.R394H 0.10 deleterious(0.01) unknown(0) TCGA-2W-A8YY-01 X 9656242 9656242 C T TBL1X Silent p.G181G 0.08 TCGA-2W-A8YY-01 X 96724767 96724767 G T DIAPH2 Intron 0.38 TCGA-2W-A8YY-01 X 9684776 9684776 C T TBL1X 3'UTR 0.48 TCGA-2W-A8YY-01 X 99547391 99547391 C T PCDH19 3'UTR 0.42 TCGA-2W-A8YY-01 X 99550030 99550030 G A PCDH19 3'UTR 0.36 TCGA-2W-A8YY-01 X 99920260 99920260 C T SRPX2 Missense_Mutation p.R185C 0.42 deleterious(0) possibly_damaging(0.727) TCGA-4J-AA1J-01 10 104239936 104239936 G A ACTR1A 3'UTR 0.27 TCGA-4J-AA1J-01 10 12149986 12149986 C T DHTKD1 Missense_Mutation p.S709L 0.29 deleterious(0) probably_damaging(0.981) TCGA-4J-AA1J-01 10 121691759 121691759 C T SEC23IP Missense_Mutation p.T896I 0.33 tolerated(0.22) benign(0.009) TCGA-4J-AA1J-01 10 123719889 123719889 G A NSMCE4A Silent p.D324D 0.44 TCGA-4J-AA1J-01 10 127677307 127677307 G C FANK1 Intron 0.31 TCGA-4J-AA1J-01 10 12871059 12871059 C G CAMK1D 3'UTR 0.10 TCGA-4J-AA1J-01 10 134017317 134017317 G A DPYSL4 Missense_Mutation p.E505K 0.06 tolerated(0.13) benign(0.102) TCGA-4J-AA1J-01 10 134723484 134723484 C T TTC40 Nonsense_Mutation p.W863* 0.42 TCGA-4J-AA1J-01 10 5682035 5682043 AAAGACCCA - ASB13 3'UTR 0.37 TCGA-4J-AA1J-01 10 5904537 5904537 G A ANKRD16 3'UTR 0.35 TCGA-4J-AA1J-01 10 93220232 93220232 C T HECTD2 Missense_Mutation p.T106I 0.17 tolerated(0.95) benign(0) TCGA-4J-AA1J-01 10 99148287 99148287 G T RRP12 Missense_Mutation p.S283Y 0.31 tolerated(0.06) benign(0.004) TCGA-4J-AA1J-01 11 113283283 113283283 A T DRD2 Missense_Mutation p.V378D 0.61 deleterious(0) probably_damaging(0.999) TCGA-4J-AA1J-01 11 1955618 1955620 GAA - TNNT3 In_Frame_Del p.K145del 0.44 TCGA-4J-AA1J-01 11 27017676 27017676 T A FIBIN 3'UTR 0.41 TCGA-4J-AA1J-01 11 47587500 47587500 G T PTPMT1 Nonsense_Mutation p.E73* 0.40 TCGA-4J-AA1J-01 11 56344538 56344538 G A OR5M10 Silent p.F220F 0.24 TCGA-4J-AA1J-01 11 62559355 62559355 C G TMEM223 Missense_Mutation p.E38Q 0.45 tolerated(0.27) benign(0.011) TCGA-4J-AA1J-01 11 65305845 65305845 C T SCYL1 Intron 0.15 TCGA-4J-AA1J-01 11 65359473 65359473 C T EHBP1L1 Missense_Mutation p.H1462Y 0.64 deleterious(0) probably_damaging(0.954) TCGA-4J-AA1J-01 11 66082873 66082873 C G CD248 Missense_Mutation p.Q542H 0.15 tolerated(0.1) benign(0.006) TCGA-4J-AA1J-01 11 72288577 72288577 C T PDE2A Missense_Mutation p.E893K 0.17 tolerated(0.09) benign(0.034) TCGA-4J-AA1J-01 11 74336477 74336477 C T POLD3 Missense_Mutation p.S253L 0.22 tolerated(0.16) possibly_damaging(0.489) TCGA-4J-AA1J-01 11 9875225 9875225 C G SBF2 Missense_Mutation p.E800Q 0.05 deleterious(0) probably_damaging(0.994) TCGA-4J-AA1J-01 12 111785356 111785356 G T CUX2 Nonsense_Mutation p.E1230* 0.42 TCGA-4J-AA1J-01 12 111785371 111785371 G A CUX2 Missense_Mutation p.E1235K 0.43 deleterious(0.04) benign(0.098) TCGA-4J-AA1J-01 12 122277859 122277859 G A HPD Silent p.V350V 0.53 TCGA-4J-AA1J-01 12 122277901 122277901 G A HPD Silent p.F336F 0.56 TCGA-4J-AA1J-01 12 123813358 123813358 C T SBNO1 Missense_Mutation p.E407K 0.38 deleterious(0) probably_damaging(1) TCGA-4J-AA1J-01 12 133215708 133215708 C T POLE Intron 0.43 TCGA-4J-AA1J-01 12 1755332 1755332 G C WNT5B Missense_Mutation p.E332Q 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-4J-AA1J-01 12 20903654 20903654 C T SLCO1C1 Missense_Mutation p.S615L 0.27 deleterious(0) possibly_damaging(0.507) TCGA-4J-AA1J-01 12 4737024 4737024 G A AKAP3 Silent p.L348L 0.53 TCGA-4J-AA1J-01 12 50187543 50187543 G A NCKAP5L Nonsense_Mutation p.Q1078* 0.24 TCGA-4J-AA1J-01 12 55038723 55038723 C G DCD Intron 0.08 TCGA-4J-AA1J-01 12 57970115 57970115 C T KIF5A Missense_Mutation p.R718W 0.23 deleterious(0) probably_damaging(0.999) TCGA-4J-AA1J-01 12 62798544 62798544 G C USP15 3'UTR 0.47 TCGA-4J-AA1J-01 12 7310789 7310789 C T CLSTN3 3'UTR 0.38 TCGA-4J-AA1J-01 12 86199400 86199400 C A RASSF9 Nonsense_Mutation p.E130* 0.37 TCGA-4J-AA1J-01 12 88490753 88490753 T C CEP290 Silent p.E1005E 0.37 TCGA-4J-AA1J-01 12 93322965 93322965 G A EEA1 5'UTR 0.48 TCGA-4J-AA1J-01 13 103395495 103395495 C G LINC00283 RNA 0.14 TCGA-4J-AA1J-01 13 111373308 111373308 C G ING1 3'UTR 0.17 TCGA-4J-AA1J-01 13 19751387 19751387 C T TUBA3C Missense_Mutation p.G246R 0.26 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-4J-AA1J-01 13 28498409 28498409 G A PDX1 Silent p.A141A 0.18 TCGA-4J-AA1J-01 13 28971161 28971161 G C FLT1 Missense_Mutation p.I532M 0.10 tolerated(0.98) probably_damaging(0.932) TCGA-4J-AA1J-01 13 31531089 31531089 C T TEX26 Missense_Mutation p.S131L 0.27 tolerated(0.06) benign(0.184) TCGA-4J-AA1J-01 13 32972688 32972688 G C BRCA2 Missense_Mutation p.L3346F 0.02 deleterious(0.01) probably_damaging(0.909) TCGA-4J-AA1J-01 13 46065092 46065092 G A COG3 Missense_Mutation p.E323K 0.26 deleterious(0.01) possibly_damaging(0.728) TCGA-4J-AA1J-01 13 73505320 73505320 G C PIBF1 Missense_Mutation p.R583T 0.16 deleterious(0) probably_damaging(0.99) TCGA-4J-AA1J-01 14 21109809 21109809 G A OR6S1 Silent p.F14F 0.30 TCGA-4J-AA1J-01 14 21424046 21424046 A - RNASE2 Frame_Shift_Del p.T40Pfs*6 0.13 TCGA-4J-AA1J-01 14 23872568 23872568 G A MYH6 Missense_Mutation p.P296L 0.21 deleterious(0) probably_damaging(1) TCGA-4J-AA1J-01 14 42355997 42355997 C T LRFN5 Missense_Mutation p.R57W 0.20 deleterious(0) probably_damaging(1) TCGA-4J-AA1J-01 14 50550430 50550430 C T C14orf183 Missense_Mutation p.G305E 0.06 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-4J-AA1J-01 14 64488174 64488174 G C SYNE2 Missense_Mutation p.E1765Q 0.27 probably_damaging(0.999) TCGA-4J-AA1J-01 14 67800104 67800104 G A MPP5 3'UTR 0.31 TCGA-4J-AA1J-01 14 74516615 74516615 C T CCDC176 Missense_Mutation p.L335F 0.11 deleterious(0) probably_damaging(0.991) TCGA-4J-AA1J-01 14 78197353 78197353 C T SNW1 Silent p.G337G 0.29 TCGA-4J-AA1J-01 14 86092089 86092089 C G FLRT2 3'UTR 0.36 TCGA-4J-AA1J-01 15 42147027 42147027 C G SPTBN5 Missense_Mutation p.E3191Q 0.39 benign(0.322) TCGA-4J-AA1J-01 15 43658750 43658750 G A ZSCAN29 Silent p.L260L 0.09 TCGA-4J-AA1J-01 15 45706819 45706819 G A SPATA5L1 Silent p.L495L 0.40 TCGA-4J-AA1J-01 15 65295572 65295572 G A MTFMT Missense_Mutation p.S333L 0.08 deleterious(0.04) possibly_damaging(0.643) TCGA-4J-AA1J-01 15 92459259 92459259 C T SLCO3A1 Silent p.L73L 0.07 TCGA-4J-AA1J-01 16 2522776 2522776 G A NTN3 Missense_Mutation p.G335R 0.60 deleterious(0) probably_damaging(1) TCGA-4J-AA1J-01 16 3071795 3071795 G A TNFRSF12A Missense_Mutation p.E120K 0.12 tolerated(0.15) probably_damaging(0.998) TCGA-4J-AA1J-01 16 4743778 4743778 G T NUDT16L1 Silent p.A17A 0.45 TCGA-4J-AA1J-01 16 4743978 4743978 G A NUDT16L1 Splice_Site p.X52_splice 0.41 TCGA-4J-AA1J-01 16 50733855 50733855 C G NOD2 Missense_Mutation p.P177R 0.12 tolerated(0.79) possibly_damaging(0.866) TCGA-4J-AA1J-01 16 56913477 56913477 C T SLC12A3 Silent p.F453F 0.39 TCGA-4J-AA1J-01 16 70531250 70531250 G A COG4 Missense_Mutation p.S452F 0.19 deleterious(0) probably_damaging(1) TCGA-4J-AA1J-01 16 85707072 85707073 - T GSE1 3'UTR 0.19 TCGA-4J-AA1J-01 16 87741679 87741679 C T KLHDC4 Intron 0.14 TCGA-4J-AA1J-01 16 89346973 89346973 G A ANKRD11 Missense_Mutation p.R1993C 0.15 benign(0.224) TCGA-4J-AA1J-01 17 1649065 1649065 G A SERPINF2 Missense_Mutation p.E77K 0.48 tolerated(0.36) benign(0.011) TCGA-4J-AA1J-01 17 1839015 1839015 A G RTN4RL1 3'UTR 0.28 TCGA-4J-AA1J-01 17 37564075 37564075 A G MED1 Missense_Mutation p.S1467P 0.16 deleterious_low_confidence(0.04) unknown(0) TCGA-4J-AA1J-01 17 37682305 37682305 C G CDK12 Missense_Mutation p.Q1166E 0.15 benign(0.314) TCGA-4J-AA1J-01 17 37883619 37883619 C T ERBB2 Silent p.P1077P 0.91 TCGA-4J-AA1J-01 17 37884336 37884336 C T ERBB2 3'UTR 0.91 TCGA-4J-AA1J-01 17 38144965 38144965 G C PSMD3 Missense_Mutation p.Q193H 0.05 deleterious(0) possibly_damaging(0.497) TCGA-4J-AA1J-01 17 40341725 40341725 G A GHDC Missense_Mutation p.S530F 0.10 deleterious(0) probably_damaging(0.955) TCGA-4J-AA1J-01 17 42152697 42152697 G A G6PC3 Silent p.L185L 0.20 TCGA-4J-AA1J-01 17 44846033 44846033 C T WNT3 Missense_Mutation p.A241T 0.37 deleterious(0) probably_damaging(1) TCGA-4J-AA1J-01 17 45924658 45924658 G A SP6 3'UTR 0.77 TCGA-4J-AA1J-01 17 45924672 45924672 G T SP6 Missense_Mutation p.S375Y 0.72 deleterious_low_confidence(0) unknown(0) TCGA-4J-AA1J-01 17 46928947 46928947 C G CALCOCO2 Missense_Mutation p.S244C 0.19 deleterious(0.03) benign(0.078) TCGA-4J-AA1J-01 17 56327034 56327034 G T LPO Missense_Mutation p.R184L 0.21 tolerated(0.62) probably_damaging(1) TCGA-4J-AA1J-01 17 57776482 57776482 C G PTRH2 5'UTR 0.40 TCGA-4J-AA1J-01 17 76886927 76886927 C T DDC8 Silent p.L553L 0.13 TCGA-4J-AA1J-01 18 11853810 11853810 G C CHMP1B 3'UTR 0.12 TCGA-4J-AA1J-01 18 28605833 28605833 C T DSC3 Missense_Mutation p.G175R 0.11 deleterious(0) probably_damaging(1) TCGA-4J-AA1J-01 18 29340380 29340380 C T SLC25A52 Missense_Mutation p.R92H 0.42 tolerated(0.05) benign(0.336) TCGA-4J-AA1J-01 18 44104552 44104552 C T LOXHD1 Missense_Mutation p.D474N 0.38 tolerated(0.07) probably_damaging(0.939) TCGA-4J-AA1J-01 18 44561300 44561300 G A TCEB3B Silent p.F112F 0.14 TCGA-4J-AA1J-01 19 37037737 37037737 C T ZNF529 3'UTR 0.47 TCGA-4J-AA1J-01 19 38956915 38956915 C T RYR1 Missense_Mutation p.R1019W 0.27 probably_damaging(0.985) TCGA-4J-AA1J-01 19 39034203 39034203 C T RYR1 Missense_Mutation p.S3937L 0.39 benign(0) TCGA-4J-AA1J-01 19 41119333 41119333 G A LTBP4 Missense_Mutation p.D886N 0.18 tolerated(0.13) probably_damaging(0.996) TCGA-4J-AA1J-01 19 41381482 41381482 C T CYP2A7 3'UTR 0.18 TCGA-4J-AA1J-01 19 42593817 42593817 C T POU2F2 3'Flank 0.39 TCGA-4J-AA1J-01 19 42862300 42862300 C T MEGF8 Silent p.L1605L 0.44 TCGA-4J-AA1J-01 19 43762532 43762532 G A PSG9 Silent p.F355F 0.36 TCGA-4J-AA1J-01 19 45594521 45594521 C G GEMIN7 3'UTR 0.05 TCGA-4J-AA1J-01 19 45594696 45594696 C G GEMIN7 3'UTR 0.06 TCGA-4J-AA1J-01 19 49979006 49979006 C G FLT3LG Missense_Mutation p.S31C 0.46 tolerated(0.06) probably_damaging(0.914) TCGA-4J-AA1J-01 19 53856179 53856179 G A ZNF845 Missense_Mutation p.E751K 0.28 tolerated(0.12) probably_damaging(0.985) TCGA-4J-AA1J-01 19 56005107 56005107 C T SSC5D Silent p.C347C 0.56 TCGA-4J-AA1J-01 19 56321346 56321346 G T NLRP11 Silent p.G210G 0.32 TCGA-4J-AA1J-01 1 100327112 100327112 G A AGL Missense_Mutation p.V46M 0.37 deleterious(0.02) possibly_damaging(0.456) TCGA-4J-AA1J-01 1 151666688 151666688 C G SNX27 3'UTR 0.17 TCGA-4J-AA1J-01 1 154995880 154995880 C A DCST2 Missense_Mutation p.A642S 0.42 tolerated(0.49) benign(0.01) TCGA-4J-AA1J-01 1 156642797 156642797 G A NES Nonsense_Mutation p.Q395* 0.28 TCGA-4J-AA1J-01 1 178499300 178499300 G C TEX35 Missense_Mutation p.Q167H 0.26 deleterious_low_confidence(0) benign(0.104) TCGA-4J-AA1J-01 1 19511598 19511598 C G UBR4 Missense_Mutation p.E645Q 0.07 benign(0.062) TCGA-4J-AA1J-01 1 204939760 204939760 G A NFASC Silent p.L340L 0.42 TCGA-4J-AA1J-01 1 224575319 224575319 C G WDR26 3'UTR 0.37 TCGA-4J-AA1J-01 1 235969045 235969045 G C LYST Missense_Mutation p.Q1131E 0.11 deleterious(0) probably_damaging(0.953) TCGA-4J-AA1J-01 1 243859018 243859018 C G AKT3 Missense_Mutation p.G16A 0.26 deleterious(0) probably_damaging(0.956) TCGA-4J-AA1J-01 1 26609224 26609224 G C UBXN11 Missense_Mutation p.S403C 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-4J-AA1J-01 1 32158394 32158394 G A COL16A1 Nonsense_Mutation p.R363* 0.11 TCGA-4J-AA1J-01 1 32707150 32707150 C G MTMR9LP RNA 0.14 TCGA-4J-AA1J-01 1 38450424 38450424 C G SF3A3 Missense_Mutation p.E111Q 0.31 tolerated(0.18) possibly_damaging(0.645) TCGA-4J-AA1J-01 1 38463229 38463229 G A FHL3 Missense_Mutation p.L231F 0.18 tolerated(0.53) benign(0.01) TCGA-4J-AA1J-01 1 76397991 76397991 G A ASB17 5'UTR 0.25 TCGA-4J-AA1J-01 20 17956418 17956418 C G MGME1 Silent p.L201L 0.11 TCGA-4J-AA1J-01 20 31043957 31043957 C T C20orf112 Silent p.R117R 0.08 TCGA-4J-AA1J-01 20 32878727 32878727 G C AHCY Silent p.L192L 0.42 TCGA-4J-AA1J-01 20 47895070 47895070 C T ZNFX1 5'Flank 0.06 TCGA-4J-AA1J-01 20 50292687 50292687 G C ATP9A Nonsense_Mutation p.S287* 0.21 TCGA-4J-AA1J-01 20 52824549 52824549 G A PFDN4 5'UTR 0.21 TCGA-4J-AA1J-01 20 55048389 55048389 G A RTFDC1 Nonsense_Mutation p.W34* 0.05 TCGA-4J-AA1J-01 20 6022186 6022186 G A LRRN4 Missense_Mutation p.R569W 0.39 deleterious(0.04) possibly_damaging(0.794) TCGA-4J-AA1J-01 20 60988951 60988951 G A RBBP8NL Missense_Mutation p.R486C 0.07 tolerated(0.09) benign(0.003) TCGA-4J-AA1J-01 20 62339965 62339965 G A ZGPAT Silent p.Q11Q 0.38 TCGA-4J-AA1J-01 20 8352049 8352049 C T PLCB1 Silent p.L66L 0.47 TCGA-4J-AA1J-01 21 31802698 31802698 C T KRTAP13-4 Silent p.L35L 0.07 TCGA-4J-AA1J-01 21 33370978 33370978 C T HUNK Silent p.P542P 0.34 TCGA-4J-AA1J-01 21 46074419 46074419 G A KRTAP12-4 Missense_Mutation p.S38L 0.53 tolerated(0.24) benign(0.023) TCGA-4J-AA1J-01 21 46689932 46689932 G C POFUT2 Silent p.V278V 0.08 TCGA-4J-AA1J-01 22 28379631 28379631 G A TTC28 Silent p.P2008P 0.37 TCGA-4J-AA1J-01 22 42609773 42609773 G T TCF20 Silent p.S513S 0.55 TCGA-4J-AA1J-01 22 51021553 51021553 G A CPT1B 5'Flank 0.39 TCGA-4J-AA1J-01 22 51066221 51066221 C G ARSA 5'UTR 0.12 TCGA-4J-AA1J-01 2 121749784 121749784 C G GLI2 3'UTR 0.52 TCGA-4J-AA1J-01 2 152548795 152548795 G C NEB Missense_Mutation p.Q660E 0.36 benign(0.151) TCGA-4J-AA1J-01 2 17699121 17699121 T C RAD51AP2 Missense_Mutation p.K188E 0.38 tolerated(0.56) benign(0.016) TCGA-4J-AA1J-01 2 178326713 178326713 G A AGPS Missense_Mutation p.M321I 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-4J-AA1J-01 2 203633277 203633277 G C FAM117B 3'UTR 0.49 TCGA-4J-AA1J-01 2 219563601 219563601 C T STK36 Missense_Mutation p.R1112W 0.13 tolerated(0.08) benign(0.002) TCGA-4J-AA1J-01 2 219894353 219894353 G A CCDC108 Silent p.F474F 0.20 TCGA-4J-AA1J-01 2 231921707 231921707 G C PSMD1 5'UTR 0.40 TCGA-4J-AA1J-01 2 236817440 236817440 T A AGAP1 Missense_Mutation p.V405D 0.40 deleterious(0) probably_damaging(0.949) TCGA-4J-AA1J-01 2 241903158 241903158 C T AC104809.3 Silent p.A985A 0.60 TCGA-4J-AA1J-01 2 264178 264178 C T SH3YL1 5'Flank 0.38 TCGA-4J-AA1J-01 2 26644254 26644254 G C DRC1 Missense_Mutation p.E114D 0.45 deleterious(0.01) benign(0.041) TCGA-4J-AA1J-01 2 44102482 44102482 C G ABCG8 Missense_Mutation p.F562L 0.11 tolerated(0.64) benign(0.02) TCGA-4J-AA1J-01 2 63282644 63282644 C G OTX1 Missense_Mutation p.F86L 0.12 deleterious(0) possibly_damaging(0.838) TCGA-4J-AA1J-01 2 65571883 65571883 G A SPRED2 Silent p.L58L 0.51 TCGA-4J-AA1J-01 2 74425844 74425844 C T MTHFD2 Missense_Mutation p.R26C 0.25 tolerated(0.18) benign(0.001) TCGA-4J-AA1J-01 2 86442817 86442817 C G REEP1 3'UTR 0.09 TCGA-4J-AA1J-01 3 100373767 100373767 G C GPR128 Missense_Mutation p.E490Q 0.13 deleterious(0) probably_damaging(0.99) TCGA-4J-AA1J-01 3 165548415 165548415 G T BCHE Missense_Mutation p.T136N 0.18 deleterious(0.02) possibly_damaging(0.751) TCGA-4J-AA1J-01 3 170781728 170781728 C G TNIK Missense_Mutation p.G1342A 0.81 deleterious(0) probably_damaging(0.997) TCGA-4J-AA1J-01 3 173152822 173152822 C T NLGN1 5'UTR 0.45 TCGA-4J-AA1J-01 3 17470009 17470009 C G TBC1D5 Missense_Mutation p.D34H 0.07 deleterious_low_confidence(0.05) benign(0.438) TCGA-4J-AA1J-01 3 176771700 176771700 G A TBL1XR1 Missense_Mutation p.S22F 0.08 tolerated(0.09) benign(0.009) TCGA-4J-AA1J-01 3 179310483 179310483 C G MRPL47 Missense_Mutation p.R193T 0.49 deleterious(0.01) possibly_damaging(0.548) TCGA-4J-AA1J-01 3 186978631 186978631 C T MASP1 Missense_Mutation p.E149K 0.49 deleterious(0.04) probably_damaging(0.95) TCGA-4J-AA1J-01 3 194062081 194062081 G T CPN2 Missense_Mutation p.H451N 0.12 tolerated(0.15) benign(0.012) TCGA-4J-AA1J-01 3 38359707 38359707 G A SLC22A14 Missense_Mutation p.M584I 0.15 tolerated(0.68) benign(0.009) TCGA-4J-AA1J-01 3 47046535 47046535 C T NBEAL2 Missense_Mutation p.S2123F 0.29 deleterious(0) probably_damaging(0.992) TCGA-4J-AA1J-01 3 48416911 48416911 C T FBXW12 Silent p.I118I 0.41 TCGA-4J-AA1J-01 3 50326727 50326727 C T IFRD2 Missense_Mutation p.E346K 0.36 deleterious(0) probably_damaging(0.999) TCGA-4J-AA1J-01 3 50375333 50375333 C T RASSF1 Intron 0.42 TCGA-4J-AA1J-01 3 56809229 56809229 C T ARHGEF3 Intron 0.16 TCGA-4J-AA1J-01 3 58279515 58279515 C T ABHD6 3'UTR 0.44 TCGA-4J-AA1J-01 3 62357989 62357989 G A FEZF2 Silent p.L185L 0.75 TCGA-4J-AA1J-01 3 63987893 63987893 C G ATXN7 3'UTR 0.62 TCGA-4J-AA1J-01 4 102117156 102117156 C T PPP3CA Missense_Mutation p.S59N 0.10 deleterious(0.04) benign(0) TCGA-4J-AA1J-01 4 114274977 114274977 G C ANK2 Missense_Mutation p.E1735Q 0.12 probably_damaging(0.979) TCGA-4J-AA1J-01 4 114278358 114278358 G C ANK2 Missense_Mutation p.D2862H 0.38 possibly_damaging(0.521) TCGA-4J-AA1J-01 4 114434494 114434494 C T CAMK2D Silent p.R312R 0.52 TCGA-4J-AA1J-01 4 120416197 120416197 C T PDE5A 3'UTR 0.43 TCGA-4J-AA1J-01 4 122737884 122737884 C T CCNA2 3'UTR 0.21 TCGA-4J-AA1J-01 4 141786732 141786732 C G RNF150 3'UTR 0.10 TCGA-4J-AA1J-01 4 146055303 146055303 G C OTUD4 3'UTR 0.14 TCGA-4J-AA1J-01 4 164506976 164506976 C T MARCH1 Silent p.K116K 0.45 TCGA-4J-AA1J-01 4 16504134 16504134 C T LDB2 3'UTR 0.33 TCGA-4J-AA1J-01 4 3129160 3129160 G A HTT Silent p.G524G 0.14 TCGA-4J-AA1J-01 4 74013139 74013139 G A ANKRD17 Silent p.I526I 0.31 TCGA-4J-AA1J-01 4 79443817 79443817 G C FRAS1 Missense_Mutation p.E3555Q 0.28 benign(0.129) TCGA-4J-AA1J-01 4 884408 884408 G A GAK Silent p.L331L 0.10 TCGA-4J-AA1J-01 4 96761360 96761360 G A PDHA2 Missense_Mutation p.R20K 0.20 tolerated(0.33) benign(0.006) TCGA-4J-AA1J-01 5 140481021 140481021 C G PCDHB3 Missense_Mutation p.T263S 0.69 tolerated_low_confidence(0.08) benign(0.028) TCGA-4J-AA1J-01 5 146833115 146833115 G A DPYSL3 Intron 0.45 TCGA-4J-AA1J-01 5 150884312 150884312 G A FAT2 3'UTR 0.17 TCGA-4J-AA1J-01 5 179326234 179326234 G A TBC1D9B Silent p.F101F 0.12 TCGA-4J-AA1J-01 5 38407965 38407965 G C EGFLAM Silent p.L402L 0.20 TCGA-4J-AA1J-01 5 41382055 41382055 G A PLCXD3 Missense_Mutation p.L229F 0.28 deleterious(0) probably_damaging(0.994) TCGA-4J-AA1J-01 5 57755697 57755697 C G PLK2 Silent p.S30S 0.36 TCGA-4J-AA1J-01 6 132938364 132938364 C T TAAR2 Silent p.K327K 0.22 TCGA-4J-AA1J-01 6 13978431 13978431 C T RNF182 3'UTR 0.65 TCGA-4J-AA1J-01 6 21000458 21000458 G A CDKAL1 Missense_Mutation p.E304K 0.11 deleterious(0.01) probably_damaging(0.964) TCGA-4J-AA1J-01 6 26197254 26197254 G A HIST1H3D Silent p.I75I 0.15 TCGA-4J-AA1J-01 6 34791049 34791049 G C UHRF1BP1 Missense_Mutation p.E88Q 0.07 tolerated(0.13) probably_damaging(0.998) TCGA-4J-AA1J-01 6 90604928 90604928 C T GJA10 Silent p.S247S 0.57 TCGA-4J-AA1J-01 6 99283697 99283697 G A POU3F2 Silent p.L316L 0.16 TCGA-4J-AA1J-01 6 99916427 99916427 C G USP45 Missense_Mutation p.R334T 0.66 deleterious(0) possibly_damaging(0.9) TCGA-4J-AA1J-01 7 105248249 105248249 G C ATXN7L1 3'UTR 0.41 TCGA-4J-AA1J-01 7 131194232 131194232 C T PODXL Silent p.L305L 0.14 TCGA-4J-AA1J-01 7 141942137 141942137 C T MOXD2P RNA 0.31 TCGA-4J-AA1J-01 7 21467841 21467841 C G SP4 5'UTR 0.18 TCGA-4J-AA1J-01 7 38534071 38534071 C G AMPH Missense_Mutation p.D88H 0.31 deleterious(0) probably_damaging(0.991) TCGA-4J-AA1J-01 7 72850331 72850331 G A FZD9 3'UTR 0.37 TCGA-4J-AA1J-01 7 74193707 74193707 C T NCF1 Missense_Mutation p.P112S 0.21 tolerated(0.33) benign(0.02) TCGA-4J-AA1J-01 7 83016350 83016350 C T SEMA3E Missense_Mutation p.D562N 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-4J-AA1J-01 7 92164106 92164106 A T RBM48 Missense_Mutation p.Q280L 0.24 deleterious(0.01) possibly_damaging(0.493) TCGA-4J-AA1J-01 7 92190499 92190499 C A FAM133B 3'UTR 0.28 TCGA-4J-AA1J-01 7 92190817 92190817 C G FAM133B 3'UTR 0.22 TCGA-4J-AA1J-01 8 25227069 25227069 C T DOCK5 Intron 0.10 TCGA-4J-AA1J-01 8 25268982 25268982 G C DOCK5 3'UTR 0.50 TCGA-4J-AA1J-01 8 26505220 26505220 C T DPYSL2 Silent p.Y395Y 0.13 TCGA-4J-AA1J-01 8 26509809 26509809 C T DPYSL2 Missense_Mutation p.R440C 0.45 deleterious(0) probably_damaging(0.978) TCGA-4J-AA1J-01 8 53084533 53084533 C G ST18 Silent p.L296L 0.21 TCGA-4J-AA1J-01 8 53084628 53084628 C G ST18 Missense_Mutation p.E265Q 0.21 tolerated(0.07) benign(0.13) TCGA-4J-AA1J-01 8 61767054 61767054 G C CHD7 Missense_Mutation p.R2303T 0.30 probably_damaging(0.942) TCGA-4J-AA1J-01 9 102732011 102732011 G C STX17 3'UTR 0.43 TCGA-4J-AA1J-01 9 114304256 114304256 G A ZNF483 Silent p.L347L 0.20 TCGA-4J-AA1J-01 9 115216316 115216316 G C HSDL2 Missense_Mutation p.E297Q 0.45 tolerated(0.36) benign(0.011) TCGA-4J-AA1J-01 9 115248693 115248693 C G C9orf147 Missense_Mutation p.Q119H 0.14 benign(0.398) TCGA-4J-AA1J-01 9 116023615 116023615 G A SLC31A1 3'UTR 0.25 TCGA-4J-AA1J-01 9 116024141 116024141 G A SLC31A1 3'UTR 0.22 TCGA-4J-AA1J-01 9 116930898 116930898 C T COL27A1 Missense_Mutation p.P355S 0.48 unknown(0) TCGA-4J-AA1J-01 9 130478145 130478145 C T PTRH1 5'UTR 0.40 TCGA-4J-AA1J-01 9 130496726 130496726 G A TOR2A Missense_Mutation p.S90F 0.15 deleterious(0) probably_damaging(0.998) TCGA-4J-AA1J-01 9 136559390 136559390 G A SARDH Silent p.P637P 0.11 TCGA-4J-AA1J-01 9 14116321 14116321 C T NFIB Missense_Mutation p.G424R 0.41 deleterious_low_confidence(0.03) probably_damaging(0.939) TCGA-4J-AA1J-01 9 17747063 17747063 G A SH3GL2 Splice_Site p.X16_splice 0.07 TCGA-4J-AA1J-01 9 21384935 21384935 G A IFNA2 Missense_Mutation p.P132S 0.27 tolerated(0.24) benign(0.066) TCGA-4J-AA1J-01 9 5126688 5126688 A G JAK2 Missense_Mutation p.Y1099C 0.31 deleterious(0.03) probably_damaging(0.963) TCGA-4J-AA1J-01 9 8524979 8524979 C A PTPRD Missense_Mutation p.A209S 0.42 deleterious(0) probably_damaging(0.997) TCGA-4J-AA1J-01 X 101395506 101395506 C T TCEAL6 3'UTR 0.57 TCGA-4J-AA1J-01 X 114144415 114144415 C A HTR2C 3'UTR 0.09 TCGA-4J-AA1J-01 X 122846702 122846702 C T THOC2 Missense_Mutation p.R43K 0.22 tolerated(0.92) benign(0.001) TCGA-4J-AA1J-01 X 1467361 1467361 C A IL3RA Missense_Mutation p.S74Y 0.44 tolerated(0.07) probably_damaging(0.972) TCGA-4J-AA1J-01 X 14882832 14882832 T C FANCB Silent p.S267S 0.37 TCGA-4J-AA1J-01 X 152086457 152086457 G A ZNF185 Intron 0.27 TCGA-4J-AA1J-01 X 153048471 153048471 G A SRPK3 Missense_Mutation p.E216K 0.37 deleterious(0.02) probably_damaging(0.981) TCGA-4J-AA1J-01 X 155003822 155003822 C G SPRY3 Missense_Mutation p.Q97E 0.41 deleterious(0.05) probably_damaging(0.952) TCGA-4J-AA1J-01 X 21990097 21990097 G A SMS Missense_Mutation p.E85K 0.15 tolerated(0.31) benign(0.104) TCGA-4J-AA1J-01 X 47034434 47034434 C T RBM10 Silent p.F173F 0.19 TCGA-4J-AA1J-01 X 70443795 70443795 C A GJB1 Missense_Mutation p.Q80K 0.42 deleterious(0) probably_damaging(0.991) TCGA-4J-AA1J-01 X 8764386 8764386 C T FAM9A Missense_Mutation p.M137I 0.25 tolerated_low_confidence(0.45) benign(0.013) TCGA-BI-A0VR-01 10 105201705 105201705 G A PDCD11 Silent p.E1560E 0.18 TCGA-BI-A0VR-01 10 133930916 133930916 G C JAKMIP3 Missense_Mutation p.E157D 0.07 deleterious(0.02) benign(0.164) TCGA-BI-A0VR-01 10 27447546 27447546 G A MASTL Silent p.L85L 0.06 TCGA-BI-A0VR-01 10 49414917 49414917 C G FRMPD2 Missense_Mutation p.R557S 0.39 deleterious(0.04) benign(0.002) TCGA-BI-A0VR-01 10 52389833 52389833 G C RP11-50E11.3 RNA 0.19 TCGA-BI-A0VR-01 10 68979522 68979522 G A CTNNA3 Missense_Mutation p.S229F 0.17 deleterious(0) possibly_damaging(0.486) TCGA-BI-A0VR-01 10 74684331 74684331 G T OIT3 Missense_Mutation p.L432F 0.17 deleterious(0.03) possibly_damaging(0.464) TCGA-BI-A0VR-01 10 78709021 78709021 G A KCNMA1 Missense_Mutation p.P846L 0.17 deleterious(0) probably_damaging(1) TCGA-BI-A0VR-01 10 89717615 89717615 C T PTEN Nonsense_Mutation p.Q214* 0.29 TCGA-BI-A0VR-01 11 104866483 104866483 A G CASP5 Silent p.F444F 0.15 TCGA-BI-A0VR-01 11 117109497 117109497 A C RNF214 Silent p.T96T 0.13 TCGA-BI-A0VR-01 11 134253724 134253724 G A B3GAT1 Silent p.D157D 0.25 TCGA-BI-A0VR-01 11 433372 433372 C T ANO9 Missense_Mutation p.E98K 0.11 deleterious(0.02) benign(0.02) TCGA-BI-A0VR-01 11 55606854 55606854 G C OR5D16 Missense_Mutation p.E209D 0.11 deleterious(0.01) benign(0.071) TCGA-BI-A0VR-01 11 55681565 55681565 C T OR5W2 Missense_Mutation p.R165H 0.10 tolerated(0.23) benign(0.068) TCGA-BI-A0VR-01 11 58390286 58390286 A G CNTF Missense_Mutation p.I21V 0.10 tolerated(0.1) benign(0.042) TCGA-BI-A0VR-01 11 60183756 60183756 G T MS4A14 Missense_Mutation p.D472Y 0.12 deleterious(0) probably_damaging(0.987) TCGA-BI-A0VR-01 11 63671484 63671484 C A MARK2 Missense_Mutation p.S514Y 0.15 deleterious(0.01) benign(0.235) TCGA-BI-A0VR-01 11 66330623 66330623 G A CTSF 3'Flank 0.18 TCGA-BI-A0VR-01 11 75727987 75727987 G C UVRAG Missense_Mutation p.D397H 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-BI-A0VR-01 11 7687688 7687688 G A CYB5R2 Missense_Mutation p.P218S 0.17 tolerated(0.19) benign(0.364) TCGA-BI-A0VR-01 12 101748657 101748657 G A UTP20 Missense_Mutation p.E1719K 0.12 tolerated(0.22) benign(0.14) TCGA-BI-A0VR-01 12 113266130 113266130 G C RPH3A Missense_Mutation p.D3H 0.15 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-BI-A0VR-01 12 113354509 113354509 G A OAS1 Missense_Mutation p.E284K 0.24 tolerated(0.67) benign(0.002) TCGA-BI-A0VR-01 12 120534993 120534993 G - RAB35 3'UTR 0.14 TCGA-BI-A0VR-01 12 4735979 4735979 C G AKAP3 Missense_Mutation p.D697H 0.09 deleterious(0.04) probably_damaging(0.963) TCGA-BI-A0VR-01 12 55863491 55863491 G A OR6C70 Silent p.F144F 0.28 TCGA-BI-A0VR-01 12 57550035 57550035 C T LRP1 Silent p.L462L 0.08 TCGA-BI-A0VR-01 12 64824015 64824015 G A XPOT Missense_Mutation p.E642K 0.23 tolerated(0.25) benign(0.024) TCGA-BI-A0VR-01 13 25894700 25894700 C G NUPL1 Missense_Mutation p.P248R 0.12 deleterious(0) probably_damaging(0.994) TCGA-BI-A0VR-01 13 31724198 31724198 C T HSPH1 Missense_Mutation p.A344T 0.31 tolerated(0.18) benign(0.037) TCGA-BI-A0VR-01 13 52972113 52972113 T C THSD1 Missense_Mutation p.Y92C 0.12 tolerated(0.35) benign(0.009) TCGA-BI-A0VR-01 13 78176203 78176203 C T SCEL Silent p.I307I 0.10 TCGA-BI-A0VR-01 14 105196350 105196350 C T ADSSL1 Missense_Mutation p.P41S 0.33 deleterious_low_confidence(0) unknown(0) TCGA-BI-A0VR-01 14 58817911 58817911 A G ARID4A Missense_Mutation p.T509A 0.28 tolerated(0.26) benign(0.001) TCGA-BI-A0VR-01 14 64599109 64599109 G C SYNE2 Missense_Mutation p.E4823Q 0.05 benign(0.297) TCGA-BI-A0VR-01 14 72117181 72117181 C T SIPA1L1 Missense_Mutation p.R650W 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-BI-A0VR-01 14 74534264 74534264 C T ALDH6A1 Silent p.K287K 0.13 TCGA-BI-A0VR-01 14 96858567 96858567 G T AK7 Missense_Mutation p.D26Y 0.16 deleterious(0) probably_damaging(1) TCGA-BI-A0VR-01 15 84488580 84488582 AGA - ADAMTSL3 In_Frame_Del p.E128del 0.14 TCGA-BI-A0VR-01 16 14540804 14540804 G A PARN Missense_Mutation p.S602L 0.13 tolerated_low_confidence(0.25) benign(0.001) TCGA-BI-A0VR-01 16 2106737 2106737 C T TSC2 Silent p.I247I 0.10 TCGA-BI-A0VR-01 16 66670350 66670350 G A CMTM4 Silent p.L107L 0.15 TCGA-BI-A0VR-01 16 69154319 69154319 G A CHTF8 Missense_Mutation p.R5W 0.28 tolerated_low_confidence(0.09) unknown(0) TCGA-BI-A0VR-01 16 76528870 76528870 C G CNTNAP4 Missense_Mutation p.S642C 0.09 deleterious(0.01) probably_damaging(0.945) TCGA-BI-A0VR-01 16 76528926 76528926 C A CNTNAP4 Missense_Mutation p.Q661K 0.13 tolerated(0.31) benign(0.371) TCGA-BI-A0VR-01 17 1548203 1548203 G C SCARF1 Missense_Mutation p.Q64E 0.14 tolerated(0.48) benign(0.004) TCGA-BI-A0VR-01 17 1631494 1631494 G A WDR81 Missense_Mutation p.E1081K 0.08 deleterious(0.03) possibly_damaging(0.623) TCGA-BI-A0VR-01 17 30815055 30815055 C A CDK5R1 Silent p.P139P 0.20 TCGA-BI-A0VR-01 17 38556817 38556817 A G TOP2A Silent p.I921I 0.15 TCGA-BI-A0VR-01 17 3917760 3917760 G A ZZEF1 Missense_Mutation p.S2732F 0.07 deleterious(0.01) benign(0.372) TCGA-BI-A0VR-01 17 40837369 40837369 G A CNTNAP1 Missense_Mutation p.E216K 0.30 deleterious(0) possibly_damaging(0.558) TCGA-BI-A0VR-01 17 41956724 41956724 G A MPP2 Silent p.F467F 0.17 TCGA-BI-A0VR-01 17 43364517 43364517 C T MAP3K14 Intron 0.17 TCGA-BI-A0VR-01 17 46030367 46030367 C T PRR15L Silent p.E78E 0.03 TCGA-BI-A0VR-01 17 5359354 5359354 T C DHX33 Missense_Mutation p.Y333C 0.30 tolerated(0.09) possibly_damaging(0.799) TCGA-BI-A0VR-01 17 6553727 6553727 G A MED31 Nonsense_Mutation p.Q19* 0.25 TCGA-BI-A0VR-01 17 67171601 67171601 C G ABCA10 Missense_Mutation p.L941F 0.18 tolerated(0.47) benign(0.029) TCGA-BI-A0VR-01 17 7752018 7752018 C G KDM6B Silent p.L804L 0.14 TCGA-BI-A0VR-01 18 21529761 21529761 G C LAMA3 Silent p.L3128L 0.04 TCGA-BI-A0VR-01 18 46860222 46860222 C G DYM Missense_Mutation p.D166H 0.07 deleterious(0.01) probably_damaging(0.975) TCGA-BI-A0VR-01 18 56964111 56964111 T G CPLX4 Missense_Mutation p.D101A 0.10 tolerated(0.08) benign(0.371) TCGA-BI-A0VR-01 18 580567 580567 G A CETN1 Silent p.L53L 0.13 TCGA-BI-A0VR-01 18 60017106 60017106 G A TNFRSF11A Silent p.P73P 0.14 TCGA-BI-A0VR-01 19 12800192 12800192 G C FBXW9 Silent p.L432L 0.26 TCGA-BI-A0VR-01 19 1487169 1487169 G A PCSK4 Missense_Mutation p.R276C 0.22 deleterious(0) possibly_damaging(0.806) TCGA-BI-A0VR-01 19 17001392 17001392 G A F2RL3 Missense_Mutation p.G373D 0.18 tolerated(0.52) possibly_damaging(0.548) TCGA-BI-A0VR-01 19 36381329 36381329 G A NFKBID Nonsense_Mutation p.Q224* 0.30 TCGA-BI-A0VR-01 19 39965349 39965349 C T SUPT5H Silent p.R1005R 0.15 TCGA-BI-A0VR-01 19 41932155 41932155 C G B3GNT8 Missense_Mutation p.G177R 0.08 tolerated(0.24) benign(0.307) TCGA-BI-A0VR-01 19 4529068 4529068 G T PLIN5 Intron 0.25 TCGA-BI-A0VR-01 19 45973859 45973859 G A FOSB Intron 0.14 TCGA-BI-A0VR-01 19 46974130 46974130 C T PNMAL1 Missense_Mutation p.V55M 0.07 deleterious(0.02) possibly_damaging(0.791) TCGA-BI-A0VR-01 19 55263156 55263156 C T KIR2DL3 Silent p.F257F 0.15 TCGA-BI-A0VR-01 19 58265724 58265724 G A ZNF776 Missense_Mutation p.C409Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-BI-A0VR-01 1 151534633 151534633 G A TUFT1 Missense_Mutation p.A43T 0.11 tolerated(0.48) probably_damaging(0.999) TCGA-BI-A0VR-01 1 1572104 1572104 C T CDK11B Silent p.L622L 0.09 TCGA-BI-A0VR-01 1 159023487 159023487 G C IFI16 Missense_Mutation p.L694F 0.05 deleterious(0) probably_damaging(0.999) TCGA-BI-A0VR-01 1 203134455 203134455 C T ADORA1 Silent p.F136F 0.19 TCGA-BI-A0VR-01 1 203472794 203472794 C G OPTC Silent p.L315L 0.10 TCGA-BI-A0VR-01 1 213032277 213032277 C T FLVCR1 Silent p.I161I 0.10 TCGA-BI-A0VR-01 1 226074304 226074304 G A LEFTY1 3'UTR 0.15 TCGA-BI-A0VR-01 1 236973894 236973894 C T MTR Silent p.I167I 0.23 TCGA-BI-A0VR-01 1 34180259 34180259 C G CSMD2 Missense_Mutation p.E1072Q 0.13 tolerated(0.08) probably_damaging(0.998) TCGA-BI-A0VR-01 1 55464880 55464880 C T BSND Silent p.F7F 0.25 TCGA-BI-A0VR-01 1 7724942 7724942 G A CAMTA1 Missense_Mutation p.D779N 0.12 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-BI-A0VR-01 1 7863155 7863155 G A PER3 Silent p.S306S 0.07 TCGA-BI-A0VR-01 20 30898226 30898226 C G KIF3B Missense_Mutation p.H216D 0.08 deleterious(0) probably_damaging(1) TCGA-BI-A0VR-01 20 30898491 30898491 C G KIF3B Missense_Mutation p.S304C 0.04 deleterious(0) probably_damaging(1) TCGA-BI-A0VR-01 20 34059961 34059961 C G CEP250 Missense_Mutation p.I345M 0.04 possibly_damaging(0.847) TCGA-BI-A0VR-01 20 60511902 60511902 C T CDH4 Silent p.N884N 0.20 TCGA-BI-A0VR-01 21 31852582 31852582 C G KRTAP19-1 Missense_Mutation p.G19R 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-BI-A0VR-01 21 34721581 34721581 G C IFNAR1 Missense_Mutation p.D325H 0.10 deleterious(0.01) possibly_damaging(0.883) TCGA-BI-A0VR-01 22 19965082 19965082 G A ARVCF Missense_Mutation p.R576W 0.12 deleterious(0) probably_damaging(1) TCGA-BI-A0VR-01 22 30688746 30688746 C T TBC1D10A Missense_Mutation p.R389H 0.12 tolerated(0.05) benign(0.001) TCGA-BI-A0VR-01 2 101646213 101646213 G A TBC1D8 Silent p.F639F 0.06 TCGA-BI-A0VR-01 2 1271197 1271197 G C SNTG2 Missense_Mutation p.D380H 0.14 deleterious(0) possibly_damaging(0.687) TCGA-BI-A0VR-01 2 139318393 139318393 G A SPOPL Missense_Mutation p.D245N 0.06 deleterious(0.01) probably_damaging(1) TCGA-BI-A0VR-01 2 168107674 168107674 G A XIRP2 Missense_Mutation p.A3258T 0.14 benign(0.177) TCGA-BI-A0VR-01 2 179462709 179462709 A G TTN Missense_Mutation p.V19063A 0.18 TCGA-BI-A0VR-01 2 189873889 189873890 - A COL3A1 Frame_Shift_Ins p.N1257Kfs*4 0.12 TCGA-BI-A0VR-01 2 196573389 196573389 G A SLC39A10 Missense_Mutation p.G466R 0.16 tolerated(0.06) possibly_damaging(0.776) TCGA-BI-A0VR-01 2 197085612 197085612 C T HECW2 Silent p.K1400K 0.14 TCGA-BI-A0VR-01 2 228678700 228678700 G C CCL20 Missense_Mutation p.E25Q 0.06 tolerated(0.15) benign(0.145) TCGA-BI-A0VR-01 2 24245997 24245997 C T MFSD2B Intron 0.34 TCGA-BI-A0VR-01 2 24247079 24247079 C A MFSD2B Silent p.L476L 0.21 TCGA-BI-A0VR-01 2 48950793 48950793 C T LHCGR Silent p.T142T 0.09 TCGA-BI-A0VR-01 2 73145356 73145356 C T EMX1 Silent p.H125H 0.11 TCGA-BI-A0VR-01 3 100963077 100963077 G A IMPG2 Silent p.L700L 0.07 TCGA-BI-A0VR-01 3 112993328 112993328 G A BOC Silent p.A447A 0.07 TCGA-BI-A0VR-01 3 113804753 113804753 A G QTRTD1 3'UTR 0.61 TCGA-BI-A0VR-01 3 137800604 137800604 G A DZIP1L Silent p.I402I 0.42 TCGA-BI-A0VR-01 3 150321258 150321258 A C SELT Missense_Mutation p.T37P 0.07 tolerated(0.1) benign(0.221) TCGA-BI-A0VR-01 3 150931083 150931083 G A P2RY14 3'UTR 0.09 TCGA-BI-A0VR-01 3 160156239 160156239 C G TRIM59 Missense_Mutation p.E245Q 0.05 deleterious(0) possibly_damaging(0.851) TCGA-BI-A0VR-01 3 193207650 193207650 G C ATP13A4 Missense_Mutation p.L203V 0.03 deleterious(0) probably_damaging(0.999) TCGA-BI-A0VR-01 3 46621265 46621265 G A TDGF1 Missense_Mutation p.G87E 0.13 deleterious(0) probably_damaging(0.991) TCGA-BI-A0VR-01 3 50404872 50404872 C T CACNA2D2 Missense_Mutation p.R792H 0.14 deleterious(0) probably_damaging(0.999) TCGA-BI-A0VR-01 3 56667588 56667588 A G FAM208A Silent p.F1077F 0.17 TCGA-BI-A0VR-01 3 66455646 66455646 G A LRIG1 Missense_Mutation p.S379L 0.12 tolerated(0.31) benign(0.002) TCGA-BI-A0VR-01 4 176561306 176561306 C T GPM6A Missense_Mutation p.G220R 0.11 deleterious(0) probably_damaging(0.913) TCGA-BI-A0VR-01 4 2952015 2952015 G C NOP14 Intron 0.06 TCGA-BI-A0VR-01 4 2952712 2952712 G C NOP14 Intron 0.10 TCGA-BI-A0VR-01 4 46252457 46252457 C A GABRA2 Missense_Mutation p.K408N 0.19 tolerated(0.1) probably_damaging(0.978) TCGA-BI-A0VR-01 5 10377945 10377945 G A MARCH6 Missense_Mutation p.E19K 0.17 deleterious(0) benign(0.217) TCGA-BI-A0VR-01 5 140257039 140257039 C A PCDHA12 Missense_Mutation p.S661Y 0.16 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-BI-A0VR-01 5 145531511 145531511 C T LARS Missense_Mutation p.D447N 0.12 tolerated(0.23) benign(0.001) TCGA-BI-A0VR-01 5 147503405 147503405 C T SPINK5 Missense_Mutation p.R850C 0.13 deleterious(0.03) possibly_damaging(0.781) TCGA-BI-A0VR-01 5 167995656 167995656 G A PANK3 Missense_Mutation p.R126C 0.06 deleterious(0.01) probably_damaging(0.923) TCGA-BI-A0VR-01 5 170236741 170236741 G C GABRP Missense_Mutation p.Q334H 0.26 tolerated(0.51) possibly_damaging(0.452) TCGA-BI-A0VR-01 5 236602 236602 G A SDHA Silent p.E440E 0.12 TCGA-BI-A0VR-01 5 480053 480053 G A SLC9A3 Silent p.L515L 0.05 TCGA-BI-A0VR-01 5 56557074 56557074 G C GPBP1 Missense_Mutation p.D417H 0.14 deleterious(0.02) probably_damaging(0.971) TCGA-BI-A0VR-01 5 64814259 64814259 G C CENPK 3'UTR 0.11 TCGA-BI-A0VR-01 5 75919124 75919124 C T F2RL2 5'UTR 0.30 TCGA-BI-A0VR-01 5 9197364 9197364 C T SEMA5A Silent p.A328A 0.09 TCGA-BI-A0VR-01 6 106967523 106967523 G C AIM1 Missense_Mutation p.E406Q 0.16 tolerated_low_confidence(0.1) benign(0.048) TCGA-BI-A0VR-01 6 144875962 144875962 A G UTRN Missense_Mutation p.E2356G 0.10 deleterious(0.01) probably_damaging(0.926) TCGA-BI-A0VR-01 6 15496965 15496965 G A JARID2 Silent p.T503T 0.10 TCGA-BI-A0VR-01 6 32135384 32135384 C T EGFL8 Silent p.I262I 0.14 TCGA-BI-A0VR-01 6 34059739 34059747 GTTCCACTT - GRM4 In_Frame_Del p.K217_N219del 0.11 TCGA-BI-A0VR-01 6 51483976 51483976 C T PKHD1 Missense_Mutation p.S4043N 0.29 tolerated_low_confidence(0.62) benign(0.001) TCGA-BI-A0VR-01 6 54191661 54191661 C T TINAG Missense_Mutation p.R191C 0.12 deleterious(0) probably_damaging(0.91) TCGA-BI-A0VR-01 6 83732175 83732175 G C UBE3D Missense_Mutation p.I281M 0.12 deleterious(0.02) benign(0.213) TCGA-BI-A0VR-01 7 107848053 107848053 C T NRCAM Missense_Mutation p.E376K 0.14 deleterious(0.02) probably_damaging(0.969) TCGA-BI-A0VR-01 7 120373014 120373014 G A KCND2 Silent p.S391S 0.15 TCGA-BI-A0VR-01 7 150069696 150069696 G A REPIN1 Missense_Mutation p.D513N 0.12 deleterious(0.01) benign(0.15) TCGA-BI-A0VR-01 7 150720969 150720969 C T ATG9B Missense_Mutation p.G181E 0.20 tolerated(0.09) probably_damaging(1) TCGA-BI-A0VR-01 7 1525079 1525079 G T INTS1 Silent p.G1001G 0.16 TCGA-BI-A0VR-01 7 157926524 157926524 G A PTPRN2 Silent p.A467A 0.12 TCGA-BI-A0VR-01 7 2998150 2998150 C T CARD11 5'UTR 0.11 TCGA-BI-A0VR-01 7 3998591 3998591 G C SDK1 Missense_Mutation p.E393D 0.28 tolerated(0.09) benign(0.022) TCGA-BI-A0VR-01 7 63982011 63982011 C G ZNF680 Missense_Mutation p.G374A 0.06 deleterious(0.02) benign(0.338) TCGA-BI-A0VR-01 7 72683317 72683317 G A GTF2IRD2P1 RNA 0.14 TCGA-BI-A0VR-01 7 75045895 75045895 G A POM121C 3'Flank 0.13 TCGA-BI-A0VR-01 7 97949382 97949382 C G BAIAP2L1 Silent p.V112V 0.06 TCGA-BI-A0VR-01 8 109252288 109252288 T A EIF3E Missense_Mutation p.R74S 0.13 deleterious(0) probably_damaging(0.942) TCGA-BI-A0VR-01 8 145620684 145620684 G A CPSF1 Missense_Mutation p.T1021M 0.16 deleterious(0) probably_damaging(0.916) TCGA-BI-A0VR-01 8 23709032 23709032 C T STC1 Missense_Mutation p.V92I 0.15 tolerated(0.58) probably_damaging(0.995) TCGA-BI-A0VR-01 8 33247035 33247035 C T FUT10 Missense_Mutation p.D220N 0.13 deleterious(0.03) probably_damaging(1) TCGA-BI-A0VR-01 9 128728131 128728131 G A PBX3 Missense_Mutation p.A412T 0.13 deleterious(0.04) benign(0.022) TCGA-BI-A0VR-01 9 135145014 135145014 C T SETX Silent p.L2425L 0.05 TCGA-BI-A0VR-01 9 79328481 79328481 G A PRUNE2 Nonsense_Mutation p.Q305* 0.24 TCGA-BI-A0VR-01 X 117742069 117742069 G A DOCK11 Missense_Mutation p.E906K 0.07 deleterious(0.01) possibly_damaging(0.491) TCGA-BI-A0VR-01 X 119669687 119669687 C G CUL4B Missense_Mutation p.E738Q 0.06 tolerated(0.36) benign(0.007) TCGA-BI-A0VR-01 X 153941667 153941667 G A GAB3 Silent p.S137S 0.10 TCGA-BI-A0VR-01 X 41202541 41202541 G T DDX3X Missense_Mutation p.V206L 0.21 deleterious(0.02) benign(0.281) TCGA-BI-A0VR-01 X 47104314 47104314 G C USP11 Missense_Mutation p.E736Q 0.08 tolerated(0.06) possibly_damaging(0.555) TCGA-BI-A0VR-01 X 48374529 48374529 C T PORCN Missense_Mutation p.R390C 0.13 deleterious(0) probably_damaging(0.93) TCGA-BI-A0VR-01 X 48976099 48976099 C T GPKOW Missense_Mutation p.M175I 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-BI-A0VR-01 X 53439197 53439199 CTT - SMC1A In_Frame_Del p.K287del 0.28 TCGA-BI-A0VR-01 X 53561048 53561048 G A HUWE1 Silent p.L4314L 0.26 TCGA-BI-A0VR-01 X 71710840 71710840 G C HDAC8 Missense_Mutation p.F189L 0.07 deleterious(0) probably_damaging(1) TCGA-BI-A0VR-01 X 77373593 77373593 G A PGK1 Silent p.L189L 0.07 TCGA-BI-A0VS-01 10 101996654 101996654 G T CWF19L1 Missense_Mutation p.Q443K 0.44 tolerated(0.18) benign(0.106) TCGA-BI-A0VS-01 10 25464455 25464455 C T GPR158 Nonsense_Mutation p.R36* 0.20 TCGA-BI-A0VS-01 10 56138561 56138561 C T PCDH15 Missense_Mutation p.G100E 0.17 deleterious(0) probably_damaging(1) TCGA-BI-A0VS-01 11 113848497 113848497 G A HTR3A Silent p.R30R 0.30 TCGA-BI-A0VS-01 11 115047275 115047275 G A CADM1 Silent p.D416D 0.45 TCGA-BI-A0VS-01 11 32636423 32636423 G C CCDC73 Missense_Mutation p.Q481E 0.15 deleterious(0.02) possibly_damaging(0.544) TCGA-BI-A0VS-01 11 56143745 56143745 G A OR8U1 Missense_Mutation p.V216I 0.17 tolerated(0.93) benign(0.029) TCGA-BI-A0VS-01 11 61178432 61178432 G A CPSF7 Missense_Mutation p.R510W 0.16 deleterious_low_confidence(0) unknown(0) TCGA-BI-A0VS-01 11 800182 800182 C T PIDD Silent p.Q741Q 0.22 TCGA-BI-A0VS-01 11 88911391 88911391 G A TYR Silent p.Q90Q 0.20 TCGA-BI-A0VS-01 11 93523888 93523888 G A MED17 Missense_Mutation p.R189Q 0.07 tolerated(0.07) possibly_damaging(0.671) TCGA-BI-A0VS-01 12 119617367 119617367 G A HSPB8 Missense_Mutation p.E84K 0.16 tolerated(0.84) benign(0.021) TCGA-BI-A0VS-01 12 15090933 15090933 T C ERP27 Missense_Mutation p.M50V 0.15 tolerated(0.59) benign(0.001) TCGA-BI-A0VS-01 12 26208357 26208357 C T RASSF8 Silent p.V27V 0.05 TCGA-BI-A0VS-01 12 26208363 26208363 C T RASSF8 Silent p.A29A 0.05 TCGA-BI-A0VS-01 12 26384103 26384103 T G SSPN 3'UTR 0.25 TCGA-BI-A0VS-01 12 333194 333194 G A SLC6A13 Silent p.V425V 0.07 TCGA-BI-A0VS-01 12 41337930 41337930 C T CNTN1 Silent p.I547I 0.21 TCGA-BI-A0VS-01 12 66517664 66517664 T G LLPH Missense_Mutation p.S116R 0.32 tolerated(0.35) unknown(0) TCGA-BI-A0VS-01 12 81112734 81112734 C T MYF5 Silent p.L224L 0.39 TCGA-BI-A0VS-01 12 96641178 96641178 C G ELK3 Missense_Mutation p.S223C 0.39 tolerated(0.07) probably_damaging(0.995) TCGA-BI-A0VS-01 13 101257341 101257341 G A TMTC4 Silent p.I730I 0.61 TCGA-BI-A0VS-01 13 32912060 32912060 C T BRCA2 Missense_Mutation p.R1190W 0.09 deleterious(0) possibly_damaging(0.54) TCGA-BI-A0VS-01 13 70456453 70456453 G A KLHL1 Missense_Mutation p.L397F 0.05 deleterious(0) probably_damaging(0.996) TCGA-BI-A0VS-01 15 35274379 35274379 C T ZNF770 Silent p.L419L 0.12 TCGA-BI-A0VS-01 15 48736764 48736764 T C FBN1 Missense_Mutation p.Y2004C 0.14 probably_damaging(0.975) TCGA-BI-A0VS-01 15 48826336 48826336 G A FBN1 Missense_Mutation p.S268F 0.34 probably_damaging(0.909) TCGA-BI-A0VS-01 16 3140073 3140073 G A ZSCAN10 Silent p.H399H 0.19 TCGA-BI-A0VS-01 16 4385082 4385082 C T GLIS2 Silent p.L182L 0.21 TCGA-BI-A0VS-01 16 72153157 72153157 C G PMFBP1 3'UTR 0.19 TCGA-BI-A0VS-01 16 8906893 8906893 G A PMM2 Missense_Mutation p.R190K 0.27 tolerated(0.16) possibly_damaging(0.591) TCGA-BI-A0VS-01 16 89757024 89757026 AGA - CDK10 In_Frame_Del p.K76del 0.13 TCGA-BI-A0VS-01 17 35830526 35830526 C G TADA2A Silent p.L306L 0.14 TCGA-BI-A0VS-01 17 39633831 39633831 G A KRT35 Missense_Mutation p.R387W 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-BI-A0VS-01 17 42222620 42222620 A C C17orf53 Missense_Mutation p.E18A 0.25 deleterious(0) probably_damaging(0.999) TCGA-BI-A0VS-01 17 56084341 56084341 C T SRSF1 Missense_Mutation p.G53E 0.27 tolerated(0.24) benign(0.285) TCGA-BI-A0VS-01 17 61888467 61888467 G C DDX42 Missense_Mutation p.K444N 0.33 deleterious(0.02) probably_damaging(0.982) TCGA-BI-A0VS-01 17 62291274 62291274 G C TEX2 Missense_Mutation p.Q102E 0.13 tolerated_low_confidence(0.68) benign(0.001) TCGA-BI-A0VS-01 17 66039427 66039427 G T KPNA2 Missense_Mutation p.G293V 0.21 deleterious(0) probably_damaging(0.998) TCGA-BI-A0VS-01 17 71282208 71282208 C T CDC42EP4 Silent p.V144V 0.16 TCGA-BI-A0VS-01 17 71282253 71282253 C G CDC42EP4 Missense_Mutation p.E129D 0.17 tolerated(0.61) benign(0.055) TCGA-BI-A0VS-01 17 73096514 73096514 C G SLC16A5 Missense_Mutation p.F252L 0.31 tolerated(0.6) benign(0.364) TCGA-BI-A0VS-01 17 73096595 73096595 C G SLC16A5 Missense_Mutation p.I279M 0.35 deleterious(0.01) benign(0.378) TCGA-BI-A0VS-01 17 953339 953339 T G ABR Missense_Mutation p.K581T 0.15 deleterious(0.01) probably_damaging(0.959) TCGA-BI-A0VS-01 18 23758844 23758844 G C PSMA8 Missense_Mutation p.K182N 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-BI-A0VS-01 18 39550410 39550410 G A PIK3C3 Missense_Mutation p.R174H 0.23 deleterious(0) possibly_damaging(0.812) TCGA-BI-A0VS-01 18 66344338 66344338 G A TMX3 Silent p.A399A 0.12 TCGA-BI-A0VS-01 18 9570273 9570273 T C PPP4R1 Silent p.P485P 0.12 TCGA-BI-A0VS-01 19 17566593 17566593 C T NXNL1 Missense_Mutation p.D168N 0.33 deleterious(0.01) probably_damaging(0.913) TCGA-BI-A0VS-01 19 38229812 38229812 C T ZNF573 Missense_Mutation p.E527K 0.15 tolerated(0.18) probably_damaging(0.987) TCGA-BI-A0VS-01 19 48800516 48800516 G A CCDC114 Missense_Mutation p.T577M 0.26 deleterious(0) probably_damaging(0.975) TCGA-BI-A0VS-01 19 53282084 53282084 G A ZNF600 5'UTR 0.13 TCGA-BI-A0VS-01 19 54611748 54611748 G A NDUFA3 3'Flank 0.45 TCGA-BI-A0VS-01 19 54872754 54872754 C G LAIR1 Missense_Mutation p.V45L 0.21 deleterious(0) probably_damaging(0.935) TCGA-BI-A0VS-01 19 54974291 54974291 G C LENG9 Missense_Mutation p.S162W 0.23 deleterious(0) probably_damaging(0.997) TCGA-BI-A0VS-01 19 55889064 55889064 C T TMEM190 Silent p.V66V 0.04 TCGA-BI-A0VS-01 19 56538828 56538828 G C NLRP5 Missense_Mutation p.R410T 0.17 tolerated(0.19) benign(0.254) TCGA-BI-A0VS-01 19 58864353 58864353 C T A1BG Missense_Mutation p.R94H 0.46 deleterious(0.03) possibly_damaging(0.756) TCGA-BI-A0VS-01 19 7619550 7619550 C T PNPLA6 Nonsense_Mutation p.R869* 0.35 TCGA-BI-A0VS-01 19 8161808 8161808 C T FBN3 Silent p.K1790K 0.10 TCGA-BI-A0VS-01 1 109801411 109801411 G A CELSR2 Missense_Mutation p.R1223H 0.50 deleterious(0.02) benign(0.002) TCGA-BI-A0VS-01 1 110766382 110766382 G A KCNC4 Missense_Mutation p.R492Q 0.12 tolerated(0.06) benign(0.081) TCGA-BI-A0VS-01 1 144864276 144864276 C T PDE4DIP Missense_Mutation p.R1940Q 0.16 tolerated(0.32) benign(0.032) TCGA-BI-A0VS-01 1 147119304 147119304 G A ACP6 Missense_Mutation p.S403L 0.08 deleterious(0) possibly_damaging(0.49) TCGA-BI-A0VS-01 1 147120085 147120085 G A ACP6 Missense_Mutation p.S369F 0.12 deleterious(0) possibly_damaging(0.897) TCGA-BI-A0VS-01 1 147121993 147121993 G A ACP6 Silent p.S310S 0.08 TCGA-BI-A0VS-01 1 147124413 147124413 G C ACP6 Intron 0.07 TCGA-BI-A0VS-01 1 150525407 150525407 G A ADAMTSL4 Missense_Mutation p.E38K 0.62 deleterious(0.01) benign(0.437) TCGA-BI-A0VS-01 1 152080239 152080239 G A TCHH Silent p.D1818D 0.04 TCGA-BI-A0VS-01 1 153745111 153745111 C T INTS3 Intron 0.42 TCGA-BI-A0VS-01 1 158687406 158687406 G A OR6K3 Missense_Mutation p.P167L 0.17 deleterious(0.02) possibly_damaging(0.873) TCGA-BI-A0VS-01 1 176564691 176564691 G C PAPPA2 Missense_Mutation p.D651H 0.11 deleterious(0) possibly_damaging(0.717) TCGA-BI-A0VS-01 1 197059457 197059457 C T ASPM Missense_Mutation p.R3233Q 0.15 deleterious(0) possibly_damaging(0.838) TCGA-BI-A0VS-01 1 203672793 203672793 C T ATP2B4 Silent p.D317D 0.26 TCGA-BI-A0VS-01 1 204403616 204403616 C G PIK3C2B Missense_Mutation p.D1213H 0.58 deleterious(0) probably_damaging(1) TCGA-BI-A0VS-01 1 207195182 207195182 G C C1orf116 3'UTR 0.30 TCGA-BI-A0VS-01 1 246927547 246927547 G A SCCPDH Splice_Site p.X331_splice 0.35 TCGA-BI-A0VS-01 1 27426904 27426904 G A SLC9A1 Missense_Mutation p.A781V 0.18 deleterious(0.03) benign(0.015) TCGA-BI-A0VS-01 1 43894132 43894132 C T SZT2 Nonsense_Mutation p.R1324* 0.07 TCGA-BI-A0VS-01 20 39987182 39987182 C T LPIN3 Missense_Mutation p.T804M 0.39 deleterious(0) probably_damaging(0.985) TCGA-BI-A0VS-01 20 40192757 40192757 T C CHD6 Intron 0.42 TCGA-BI-A0VS-01 20 62199860 62199860 C T HELZ2 Silent p.A527A 0.31 TCGA-BI-A0VS-01 20 62559804 62559804 C T DNAJC5 Missense_Mutation p.R36W 0.12 deleterious(0) probably_damaging(0.999) TCGA-BI-A0VS-01 21 16338529 16338529 G A NRIP1 Missense_Mutation p.P662L 0.23 deleterious(0) benign(0.409) TCGA-BI-A0VS-01 21 34804527 34804528 - AA IFNGR2 Frame_Shift_Ins p.P204Nfs*27 0.34 TCGA-BI-A0VS-01 22 36915583 36915583 C G EIF3D Missense_Mutation p.E194Q 0.22 tolerated(0.66) benign(0.044) TCGA-BI-A0VS-01 2 101905451 101905453 TAA - RNF149 In_Frame_Del p.I282del 0.15 TCGA-BI-A0VS-01 2 152476025 152476025 G A NEB Silent p.I3604I 0.37 TCGA-BI-A0VS-01 2 158412762 158412762 C G ACVR1C Silent p.A129A 0.36 TCGA-BI-A0VS-01 2 191301315 191301315 C G MFSD6 Missense_Mutation p.S187C 0.31 deleterious(0.03) benign(0.353) TCGA-BI-A0VS-01 2 203079157 203079157 C G SUMO1 Missense_Mutation p.D30H 0.13 deleterious(0) probably_damaging(0.969) TCGA-BI-A0VS-01 2 27592363 27592363 C G EIF2B4 Missense_Mutation p.K64N 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-BI-A0VS-01 2 28635065 28635065 C G FOSL2 Missense_Mutation p.S244C 0.15 deleterious(0) possibly_damaging(0.887) TCGA-BI-A0VS-01 2 28635081 28635081 C T FOSL2 Silent p.I249I 0.18 TCGA-BI-A0VS-01 2 33952630 33952630 A G AC009499.1 Intron 0.13 TCGA-BI-A0VS-01 2 46597010 46597010 G A EPAS1 Missense_Mutation p.R275H 0.13 deleterious(0.05) benign(0.436) TCGA-BI-A0VS-01 2 71653771 71653771 G A ZNF638 Missense_Mutation p.G1591D 0.09 deleterious(0.01) benign(0.075) TCGA-BI-A0VS-01 2 74320665 74320665 G A TET3 Missense_Mutation p.E912K 0.10 deleterious(0) probably_damaging(1) TCGA-BI-A0VS-01 2 98409038 98409038 C G TMEM131 Missense_Mutation p.E1319Q 0.26 tolerated_low_confidence(0.26) benign(0.176) TCGA-BI-A0VS-01 2 99688285 99688285 G A TSGA10 Missense_Mutation p.R331W 0.26 deleterious(0) probably_damaging(0.967) TCGA-BI-A0VS-01 3 108195277 108195277 G A MYH15 Silent p.N420N 0.16 TCGA-BI-A0VS-01 3 11372813 11372813 G A ATG7 Splice_Site p.X227_splice 0.46 TCGA-BI-A0VS-01 3 124951901 124951901 C T ZNF148 Missense_Mutation p.E557K 0.13 deleterious(0.01) possibly_damaging(0.551) TCGA-BI-A0VS-01 3 148789138 148789138 T C HLTF Silent p.E265E 0.09 TCGA-BI-A0VS-01 3 160803608 160803608 G A B3GALNT1 Missense_Mutation p.S312F 0.05 deleterious(0.01) possibly_damaging(0.518) TCGA-BI-A0VS-01 3 194126531 194126531 T G ATP13A3 3'UTR 0.62 TCGA-BI-A0VS-01 3 49933981 49933981 C T MST1R Missense_Mutation p.E811K 0.21 tolerated(0.2) benign(0.016) TCGA-BI-A0VS-01 3 50005125 50005125 G C RBM6 Missense_Mutation p.E89D 0.06 tolerated_low_confidence(0.1) benign(0.165) TCGA-BI-A0VS-01 3 78734954 78734954 G A ROBO1 Silent p.C428C 0.48 TCGA-BI-A0VS-01 4 110791137 110791137 C T LRIT3 Missense_Mutation p.S411F 0.43 deleterious(0.05) benign(0.001) TCGA-BI-A0VS-01 4 128626914 128626914 A G INTU Missense_Mutation p.T579A 0.49 tolerated(0.75) benign(0.001) TCGA-BI-A0VS-01 4 157688963 157688963 G A PDGFC Nonsense_Mutation p.Q295* 0.38 TCGA-BI-A0VS-01 4 175896932 175896932 C T ADAM29 Nonsense_Mutation p.Q86* 0.40 TCGA-BI-A0VS-01 4 39246134 39246134 C T WDR19 Silent p.Y869Y 0.15 TCGA-BI-A0VS-01 4 40752791 40752791 G C NSUN7 Silent p.L27L 0.19 TCGA-BI-A0VS-01 4 49040097 49040097 T G CWH43 Missense_Mutation p.L568R 0.12 deleterious(0.01) probably_damaging(0.92) TCGA-BI-A0VS-01 4 6615955 6615955 G A MAN2B2 Silent p.P858P 0.16 TCGA-BI-A0VS-01 4 7774496 7774496 C T AFAP1 Intron 0.25 TCGA-BI-A0VS-01 4 87770275 87770275 A G SLC10A6 5'UTR 0.38 TCGA-BI-A0VS-01 4 89326036 89326036 T C HERC6 Silent p.S367S 0.22 TCGA-BI-A0VS-01 5 1244406 1244406 G C SLC6A18 Missense_Mutation p.D472H 0.06 deleterious(0) probably_damaging(0.985) TCGA-BI-A0VS-01 5 140741175 140741175 C G PCDHGB2 Missense_Mutation p.I491M 0.35 deleterious(0) probably_damaging(0.988) TCGA-BI-A0VS-01 5 140741440 140741440 C G PCDHGB2 Missense_Mutation p.R580G 0.30 deleterious(0) probably_damaging(0.992) TCGA-BI-A0VS-01 5 140741819 140741819 C T PCDHGB2 Missense_Mutation p.A706V 0.41 tolerated(0.22) benign(0.048) TCGA-BI-A0VS-01 5 140741884 140741884 C T PCDHGB2 Nonsense_Mutation p.Q728* 0.37 TCGA-BI-A0VS-01 5 156590578 156590578 C G FAM71B Missense_Mutation p.G233A 0.14 deleterious(0) probably_damaging(0.995) TCGA-BI-A0VS-01 5 21975288 21975288 G C CDH12 Missense_Mutation p.F146L 0.12 deleterious(0) probably_damaging(0.954) TCGA-BI-A0VS-01 5 6742641 6742641 G T PAPD7 Silent p.V99V 0.09 TCGA-BI-A0VS-01 5 80554979 80554979 G A CKMT2 Nonsense_Mutation p.W307* 0.16 TCGA-BI-A0VS-01 5 80736439 80736439 C A SSBP2 Missense_Mutation p.G289V 0.12 deleterious(0) probably_damaging(0.989) TCGA-BI-A0VS-01 6 29395167 29395167 C T OR11A1 Silent p.L84L 0.64 TCGA-BI-A0VS-01 6 64422276 64422276 C T PHF3 Nonsense_Mutation p.Q1598* 0.14 TCGA-BI-A0VS-01 6 76386944 76386944 G A SENP6 Missense_Mutation p.C607Y 0.07 tolerated(0.91) possibly_damaging(0.526) TCGA-BI-A0VS-01 6 99817559 99817559 C T COQ3 Missense_Mutation p.E343K 0.34 deleterious_low_confidence(0.02) benign(0.126) TCGA-BI-A0VS-01 7 101844947 101844947 C T CUX1 Silent p.D801D 0.12 TCGA-BI-A0VS-01 7 150069177 150069177 C T REPIN1 Missense_Mutation p.R340W 0.16 deleterious(0) probably_damaging(1) TCGA-BI-A0VS-01 7 151970952 151970952 G A KMT2C Nonsense_Mutation p.R284* 0.10 TCGA-BI-A0VS-01 7 25266507 25266507 C A NPVF Missense_Mutation p.G93W 0.17 deleterious(0) probably_damaging(1) TCGA-BI-A0VS-01 7 6048709 6048709 G A PMS2 5'UTR 0.29 TCGA-BI-A0VS-01 7 89917563 89917563 G A C7orf63 Missense_Mutation p.E558K 0.34 deleterious(0.04) benign(0.245) TCGA-BI-A0VS-01 8 100155380 100155380 C T VPS13B Silent p.S610S 0.16 TCGA-BI-A0VS-01 8 102582583 102582583 C T GRHL2 Missense_Mutation p.S232L 0.05 tolerated(0.17) benign(0.03) TCGA-BI-A0VS-01 8 10480214 10480214 C T RP1L1 Silent p.Q166Q 0.19 TCGA-BI-A0VS-01 8 62468503 62468503 C G ASPH Missense_Mutation p.E506Q 0.05 deleterious(0.01) benign(0.342) TCGA-BI-A0VS-01 9 109690314 109690314 G T ZNF462 Missense_Mutation p.C1374F 0.33 probably_damaging(0.994) TCGA-BI-A0VS-01 9 134362661 134362661 C T PRRC2B Silent p.F1988F 0.44 TCGA-BI-A0VS-01 9 14750127 14750127 C G FREM1 Missense_Mutation p.G1852A 0.18 tolerated(0.1) benign(0.022) TCGA-BI-A0VS-01 9 18777507 18777507 G A ADAMTSL1 Missense_Mutation p.D1094N 0.27 deleterious(0.01) possibly_damaging(0.618) TCGA-BI-A0VS-01 X 110406215 110406215 G C PAK3 Missense_Mutation p.E217Q 0.26 tolerated(0.49) possibly_damaging(0.457) TCGA-BI-A0VS-01 X 111698017 111698017 G C ZCCHC16 Missense_Mutation p.E21Q 0.06 deleterious(0.02) possibly_damaging(0.836) TCGA-BI-A0VS-01 X 117570699 117570702 CAGT - WDR44 Frame_Shift_Del p.V630Dfs*17 0.25 TCGA-BI-A0VS-01 X 119678431 119678431 C G CUL4B Missense_Mutation p.D348H 0.03 deleterious(0.02) possibly_damaging(0.608) TCGA-BI-A0VS-01 X 122551678 122551678 C G GRIA3 Intron 0.50 TCGA-BI-A0VS-01 X 135326895 135326895 G C MAP7D3 Missense_Mutation p.Q105E 0.57 deleterious(0.01) possibly_damaging(0.901) TCGA-BI-A0VS-01 X 138714590 138714590 G T MCF2 Missense_Mutation p.H85Q 0.09 tolerated(1) probably_damaging(0.998) TCGA-BI-A0VS-01 X 140271217 140271217 C T LDOC1 5'UTR 0.10 TCGA-BI-A0VS-01 X 14748344 14748344 C T GLRA2 Missense_Mutation p.R366C 0.18 deleterious(0.03) possibly_damaging(0.791) TCGA-BI-A0VS-01 X 150867262 150867262 G C PRRG3 5'UTR 0.12 TCGA-BI-A0VS-01 X 155003762 155003762 C T SPRY3 Nonsense_Mutation p.Q77* 0.05 TCGA-BI-A0VS-01 X 155231085 155231085 G A IL9R Intron 0.56 TCGA-BI-A0VS-01 X 155239720 155239720 G A IL9R Silent p.T404T 0.62 TCGA-BI-A0VS-01 X 19482436 19482436 G T MAP3K15 Missense_Mutation p.A205D 0.16 deleterious(0.01) probably_damaging(0.969) TCGA-BI-A0VS-01 X 71825423 71825423 C T PHKA1 Missense_Mutation p.E885K 0.11 tolerated(0.07) benign(0.038) TCGA-BI-A0VS-01 X 86868950 86868950 G A KLHL4 Missense_Mutation p.A165T 0.24 deleterious(0) probably_damaging(0.999) TCGA-BI-A0VS-01 X 88008861 88008861 G A CPXCR1 Missense_Mutation p.R149K 0.28 tolerated(0.34) possibly_damaging(0.567) TCGA-BI-A20A-01 10 134627759 134627759 C T TTC40 Splice_Site p.X2429_splice 0.23 TCGA-BI-A20A-01 10 91469150 91469150 C T KIF20B Nonsense_Mutation p.Q95* 0.27 TCGA-BI-A20A-01 11 114401428 114401428 C A NXPE1 5'UTR 0.08 TCGA-BI-A20A-01 11 59245562 59245562 C A OR4D10 Silent p.V220V 0.15 TCGA-BI-A20A-01 11 59949162 59949162 C T MS4A6A Silent p.V41V 0.20 TCGA-BI-A20A-01 12 121444193 121444193 T A C12orf43 Missense_Mutation p.I98F 0.19 deleterious(0) possibly_damaging(0.839) TCGA-BI-A20A-01 12 123799990 123799990 C T SBNO1 Missense_Mutation p.G1017E 0.26 deleterious(0) probably_damaging(0.999) TCGA-BI-A20A-01 12 56811921 56811921 C T TIMELESS Missense_Mutation p.E1151K 0.28 tolerated_low_confidence(0.34) benign(0.004) TCGA-BI-A20A-01 17 34067538 34067538 G A RASL10B Silent p.Q109Q 0.08 TCGA-BI-A20A-01 17 34073404 34073404 G C GAS2L2 Missense_Mutation p.S371C 0.14 deleterious(0.03) benign(0.057) TCGA-BI-A20A-01 17 48351849 48351849 G A TMEM92 5'UTR 0.25 TCGA-BI-A20A-01 17 61685348 61685348 G A TACO1 Missense_Mutation p.D294N 0.16 deleterious(0.04) probably_damaging(0.995) TCGA-BI-A20A-01 17 7572982 7572982 G C TP53 Missense_Mutation p.S376C 0.11 deleterious(0.02) benign(0.076) TCGA-BI-A20A-01 18 43532369 43532369 G A EPG5 Nonsense_Mutation p.R417* 0.15 TCGA-BI-A20A-01 18 57106986 57106986 C T CCBE1 Missense_Mutation p.G280S 0.20 tolerated(0.05) probably_damaging(0.966) TCGA-BI-A20A-01 19 2097444 2097444 G C IZUMO4 Missense_Mutation p.R107P 0.14 deleterious(0) probably_damaging(0.986) TCGA-BI-A20A-01 19 23938281 23938281 G T ZNF681 Missense_Mutation p.Q26K 0.08 tolerated(0.09) benign(0.003) TCGA-BI-A20A-01 19 58640849 58640849 G A ZNF329 Missense_Mutation p.R8W 0.24 deleterious(0.04) benign(0) TCGA-BI-A20A-01 19 746526 746526 C T PALM Silent p.P292P 0.27 TCGA-BI-A20A-01 1 19419826 19419826 G A UBR4 Missense_Mutation p.H4698Y 0.15 probably_damaging(0.932) TCGA-BI-A20A-01 1 215901538 215901538 T C USH2A Missense_Mutation p.D3967G 0.21 benign(0.002) TCGA-BI-A20A-01 1 248309230 248309230 C T OR2M5 Missense_Mutation p.R261W 0.22 deleterious(0.04) benign(0.007) TCGA-BI-A20A-01 20 25491352 25491352 C T NINL Missense_Mutation p.E159K 0.29 tolerated(0.06) benign(0.004) TCGA-BI-A20A-01 20 62192594 62192594 G A HELZ2 Silent p.F2329F 0.35 TCGA-BI-A20A-01 20 9546627 9546627 G A PAK7 Silent p.I465I 0.34 TCGA-BI-A20A-01 22 29182371 29182371 G C CCDC117 3'UTR 0.29 TCGA-BI-A20A-01 2 135891462 135891462 C T RAB3GAP1 Missense_Mutation p.S453F 0.14 tolerated(0.1) possibly_damaging(0.707) TCGA-BI-A20A-01 2 149270589 149270589 C T MBD5 3'UTR 0.29 TCGA-BI-A20A-01 2 1500418 1500418 G A TPO Missense_Mutation p.C756Y 0.14 deleterious(0) probably_damaging(0.976) TCGA-BI-A20A-01 2 163200720 163200720 G A GCA 5'UTR 0.43 TCGA-BI-A20A-01 2 179417593 179417593 C T TTN Missense_Mutation p.E30012K 0.58 TCGA-BI-A20A-01 2 241831156 241831156 C G C2orf54 Missense_Mutation p.R180T 0.46 tolerated(0.06) benign(0.197) TCGA-BI-A20A-01 3 100962778 100962778 T A IMPG2 Silent p.A799A 0.30 TCGA-BI-A20A-01 3 122459641 122459641 C G HSPBAP1 Missense_Mutation p.E340Q 0.13 tolerated(0.34) benign(0.002) TCGA-BI-A20A-01 3 123044256 123044256 G A ADCY5 Silent p.I667I 0.19 TCGA-BI-A20A-01 3 130360553 130360553 C T COL6A6 Missense_Mutation p.R1717C 0.25 deleterious(0) possibly_damaging(0.847) TCGA-BI-A20A-01 3 183689641 183689641 C T ABCC5 Missense_Mutation p.E491K 0.12 tolerated(0.06) benign(0.248) TCGA-BI-A20A-01 3 196287874 196287874 T C WDR53 Missense_Mutation p.D158G 0.22 deleterious(0) probably_damaging(1) TCGA-BI-A20A-01 3 197639609 197639609 C T IQCG Missense_Mutation p.M300I 0.10 tolerated(0.24) benign(0.01) TCGA-BI-A20A-01 3 38793865 38793865 G A SCN10A Missense_Mutation p.R534W 0.65 deleterious(0) possibly_damaging(0.677) TCGA-BI-A20A-01 4 122853996 122853996 G A TRPC3 Silent p.N139N 0.21 TCGA-BI-A20A-01 4 123332499 123332499 T A ADAD1 Missense_Mutation p.L324H 0.33 deleterious(0) probably_damaging(1) TCGA-BI-A20A-01 4 1732898 1732899 - GAGA TACC3 Frame_Shift_Ins p.A490Efs*18 0.20 TCGA-BI-A20A-01 4 186320755 186320755 G A ANKRD37 Missense_Mutation p.D102N 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-BI-A20A-01 4 1944085 1944085 C G WHSC1 Intron 0.31 TCGA-BI-A20A-01 4 46066531 46066531 A T GABRG1 Silent p.I184I 0.16 TCGA-BI-A20A-01 5 140167432 140167432 A G PCDHA1 Silent p.A519A 0.13 TCGA-BI-A20A-01 5 140167459 140167459 G A PCDHA1 Silent p.L528L 0.11 TCGA-BI-A20A-01 5 140175999 140175999 G A PCDHA2 Missense_Mutation p.A484T 0.14 tolerated_low_confidence(0.05) benign(0.286) TCGA-BI-A20A-01 5 140730746 140730746 G A PCDHGB1 Missense_Mutation p.E307K 0.17 tolerated(0.19) benign(0.02) TCGA-BI-A20A-01 5 60186820 60186820 C T ERCC8 Missense_Mutation p.G313S 0.16 tolerated(0.12) benign(0.125) TCGA-BI-A20A-01 5 64766877 64766877 C T ADAMTS6 Missense_Mutation p.D64N 0.35 tolerated(0.46) benign(0.063) TCGA-BI-A20A-01 6 117199067 117199067 C T RFX6 Missense_Mutation p.T111M 0.14 deleterious(0) possibly_damaging(0.776) TCGA-BI-A20A-01 6 12121870 12121870 C T HIVEP1 Silent p.S614S 0.22 TCGA-BI-A20A-01 6 43323777 43323777 A G ZNF318 Missense_Mutation p.I432T 0.20 benign(0.287) TCGA-BI-A20A-01 6 44361207 44361207 T - CDC5L Frame_Shift_Del p.N112Kfs*17 0.15 TCGA-BI-A20A-01 7 100685735 100685735 G A MUC17 Missense_Mutation p.E3680K 0.31 benign(0.004) TCGA-BI-A20A-01 7 100849501 100849501 C T PLOD3 3'UTR 0.23 TCGA-BI-A20A-01 7 48092508 48092508 G A C7orf57 Missense_Mutation p.E273K 0.18 tolerated_low_confidence(0.15) benign(0.015) TCGA-BI-A20A-01 8 24181361 24181361 C T ADAM28 Silent p.L245L 0.30 TCGA-BI-A20A-01 9 139379423 139379423 G A C9orf163 Missense_Mutation p.A175T 0.34 tolerated_low_confidence(1) possibly_damaging(0.695) TCGA-BI-A20A-01 9 990870 990870 C T DMRT3 Silent p.R428R 0.17 TCGA-BI-A20A-01 X 107979294 107979294 C T IRS4 Missense_Mutation p.R94H 0.10 deleterious(0) probably_damaging(0.998) TCGA-BI-A20A-01 X 134947931 134947931 T C CT45A5 Missense_Mutation p.K132E 0.10 deleterious(0) probably_damaging(0.998) TCGA-BI-A20A-01 X 14027221 14027221 G T GEMIN8 Nonsense_Mutation p.C180* 0.16 TCGA-BI-A20A-01 X 141290713 141290713 G A MAGEC2 Missense_Mutation p.A354V 0.14 deleterious(0.01) benign(0.115) TCGA-BI-A20A-01 X 152226928 152226928 G T PNMA3 3'UTR 0.23 TCGA-BI-A20A-01 X 2406946 2406946 C A ZBED1 Silent p.L605L 0.08 TCGA-BI-A20A-01 X 37663318 37663318 A T CYBB Silent p.T362T 0.16 TCGA-BI-A20A-01 X 48458950 48458950 C T WDR13 Missense_Mutation p.P256L 0.24 tolerated(0.33) benign(0.007) TCGA-BI-A20A-01 X 70342153 70342153 C A MED12 Missense_Mutation p.S402Y 0.24 probably_damaging(0.998) TCGA-BI-A20A-01 X 71351393 71351393 C T RGAG4 5'UTR 0.07 TCGA-C5-A0TN-01 10 98064245 98064245 G A DNTT 5'UTR 0.14 TCGA-C5-A0TN-01 12 109537062 109537062 C T UNG Silent p.T136T 0.45 TCGA-C5-A0TN-01 12 41582515 41582515 C T PDZRN4 Silent p.R86R 0.55 TCGA-C5-A0TN-01 15 102516413 102516413 C T WASH3P 3'Flank 0.18 TCGA-C5-A0TN-01 19 12383179 12383179 G C ZNF44 3'UTR 0.27 TCGA-C5-A0TN-01 19 39805231 39805231 A C LRFN1 Missense_Mutation p.F249C 0.32 deleterious(0) probably_damaging(0.993) TCGA-C5-A0TN-01 19 43348532 43348532 A G PSG10P RNA 0.17 TCGA-C5-A0TN-01 19 44378036 44378036 C T ZNF404 Missense_Mutation p.M110I 0.17 tolerated(0.26) benign(0.039) TCGA-C5-A0TN-01 19 51767260 51767260 T C SIGLECL1 5'UTR 0.07 TCGA-C5-A0TN-01 19 54722725 54722725 G C LILRB3 Intron 0.18 TCGA-C5-A0TN-01 1 109365931 109365931 G C AKNAD1 Intron 0.38 TCGA-C5-A0TN-01 1 151508792 151508792 C T CGN Missense_Mutation p.R1093W 0.46 deleterious(0) probably_damaging(1) TCGA-C5-A0TN-01 1 27684232 27684232 C G MAP3K6 Missense_Mutation p.E1017D 0.24 tolerated(0.11) benign(0.005) TCGA-C5-A0TN-01 20 34054842 34054842 C T CEP250 Missense_Mutation p.R182W 0.40 probably_damaging(1) TCGA-C5-A0TN-01 20 45130587 45130587 T C ZNF334 Missense_Mutation p.N464S 0.49 tolerated(0.5) benign(0.008) TCGA-C5-A0TN-01 21 46888159 46888159 G A COL18A1 Missense_Mutation p.R217H 0.07 unknown(0) TCGA-C5-A0TN-01 22 25320198 25320198 G A SGSM1 Missense_Mutation p.R1135Q 0.29 tolerated(0.06) benign(0.271) TCGA-C5-A0TN-01 2 10566867 10566867 G C HPCAL1 Missense_Mutation p.E168Q 0.40 deleterious(0) probably_damaging(0.981) TCGA-C5-A0TN-01 2 121744182 121744182 C T GLI2 Missense_Mutation p.P762L 0.49 tolerated(0.19) benign(0.204) TCGA-C5-A0TN-01 2 1271203 1271203 G A SNTG2 Missense_Mutation p.E382K 0.24 tolerated(0.84) benign(0.146) TCGA-C5-A0TN-01 3 131220486 131220486 C G MRPL3 Missense_Mutation p.E56Q 0.45 deleterious(0.02) probably_damaging(0.971) TCGA-C5-A0TN-01 3 167196719 167196719 C A WDR49 Missense_Mutation p.A681S 0.56 tolerated(0.28) benign(0.219) TCGA-C5-A0TN-01 3 78987932 78987932 C G ROBO1 Missense_Mutation p.E106D 0.95 tolerated(0.06) benign(0.001) TCGA-C5-A0TN-01 4 177046324 177046324 C T WDR17 Missense_Mutation p.T227M 0.93 deleterious(0.03) benign(0.04) TCGA-C5-A0TN-01 5 118814681 118814681 C G HSD17B4 Missense_Mutation p.A221G 0.07 deleterious(0) probably_damaging(1) TCGA-C5-A0TN-01 5 31318086 31318086 A G CDH6 Intron 0.68 TCGA-C5-A0TN-01 7 23552514 23552514 T C TRA2A Missense_Mutation p.E175G 0.66 tolerated(0.06) benign(0.066) TCGA-C5-A0TN-01 8 77766275 77766275 C T ZFHX4 Missense_Mutation p.A2373V 0.46 possibly_damaging(0.533) TCGA-C5-A0TN-01 X 100538563 100538563 G A TAF7L Missense_Mutation p.R138C 0.46 deleterious(0.04) possibly_damaging(0.515) TCGA-C5-A0TN-01 X 153068758 153068758 G A PDZD4 3'UTR 0.48 TCGA-C5-A0TN-01 X 76814318 76814318 C T ATRX Splice_Site p.X2109_splice 0.66 TCGA-C5-A1BE-01 10 101292766 101292766 C T NKX2-3 5'UTR 0.29 TCGA-C5-A1BE-01 10 105956648 105956648 T C WDR96 Missense_Mutation p.D419G 0.38 deleterious(0) benign(0.251) TCGA-C5-A1BE-01 10 133769261 133769261 G A PPP2R2D Missense_Mutation p.E355K 0.21 deleterious(0) possibly_damaging(0.581) TCGA-C5-A1BE-01 11 55405901 55405901 T - OR4P4 Frame_Shift_Del p.V23Afs*21 0.35 TCGA-C5-A1BE-01 11 60292711 60292711 G A MS4A13 Missense_Mutation p.C73Y 0.05 deleterious(0) probably_damaging(0.93) TCGA-C5-A1BE-01 11 70282546 70282546 C T CTTN 3'UTR 0.69 TCGA-C5-A1BE-01 12 109623483 109623483 A G ACACB Missense_Mutation p.N640D 0.25 tolerated(0.14) benign(0.028) TCGA-C5-A1BE-01 12 11244372 11244372 C G TAS2R43 Missense_Mutation p.V153L 0.55 tolerated(0.13) benign(0.012) TCGA-C5-A1BE-01 12 12247585 12247585 C G BCL2L14 Intron 0.29 TCGA-C5-A1BE-01 12 13906449 13906449 G A GRIN2B Missense_Mutation p.A271V 0.36 tolerated(0.17) benign(0.058) TCGA-C5-A1BE-01 12 39763594 39763594 T - KIF21A Frame_Shift_Del p.K129Nfs*3 0.29 TCGA-C5-A1BE-01 12 54339165 54339165 C T HOXC13 3'UTR 0.29 TCGA-C5-A1BE-01 12 57578215 57578215 G A LRP1 Missense_Mutation p.G2056S 0.32 probably_damaging(1) TCGA-C5-A1BE-01 12 6128535 6128535 G A VWF Missense_Mutation p.A1350V 0.22 tolerated(0.22) benign(0) TCGA-C5-A1BE-01 13 108861175 108861175 T A LIG4 Silent p.R814R 0.28 TCGA-C5-A1BE-01 13 49796301 49796301 C A MLNR Missense_Mutation p.L343I 0.40 deleterious(0) probably_damaging(1) TCGA-C5-A1BE-01 13 98622062 98622062 G A IPO5 Missense_Mutation p.E10K 0.20 deleterious_low_confidence(0) benign(0.018) TCGA-C5-A1BE-01 14 24619469 24619469 G A RNF31 Missense_Mutation p.E337K 0.27 tolerated(0.25) benign(0.092) TCGA-C5-A1BE-01 14 50100351 50100351 G T DNAAF2 Nonsense_Mutation p.S506* 0.26 TCGA-C5-A1BE-01 14 51290144 51290144 C A NIN Intron 0.41 TCGA-C5-A1BE-01 14 59112964 59112964 G A DACT1 Silent p.K541K 0.31 TCGA-C5-A1BE-01 14 67850056 67850056 G A EIF2S1 Missense_Mutation p.E283K 0.25 deleterious(0) possibly_damaging(0.891) TCGA-C5-A1BE-01 14 96998947 96998947 C G PAPOLA Nonsense_Mutation p.S266* 0.04 TCGA-C5-A1BE-01 15 22990123 22990123 C T CYFIP1 Nonsense_Mutation p.Q915* 0.33 TCGA-C5-A1BE-01 15 90767093 90767093 C G SEMA4B Missense_Mutation p.S356C 0.27 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BE-01 16 21147833 21147833 C T DNAH3 Missense_Mutation p.R233K 0.32 tolerated(0.12) benign(0.063) TCGA-C5-A1BE-01 16 22126785 22126785 G A VWA3A Missense_Mutation p.M269I 0.41 tolerated(0.16) benign(0.016) TCGA-C5-A1BE-01 16 46943727 46943727 C T GPT2 Silent p.D236D 0.28 TCGA-C5-A1BE-01 17 42930947 42930947 G A EFTUD2 Missense_Mutation p.H802Y 0.29 tolerated(1) benign(0.02) TCGA-C5-A1BE-01 17 48559580 48559580 G A RSAD1 Silent p.P201P 0.26 TCGA-C5-A1BE-01 17 59155836 59155836 C T BCAS3 Missense_Mutation p.T773M 0.23 deleterious(0.03) possibly_damaging(0.714) TCGA-C5-A1BE-01 17 59945364 59945364 G A INTS2 Missense_Mutation p.T1092I 0.23 tolerated(0.07) probably_damaging(0.914) TCGA-C5-A1BE-01 17 61950693 61950693 C T CSH2 Missense_Mutation p.R6Q 0.16 tolerated(0.4) benign(0.005) TCGA-C5-A1BE-01 17 73738775 73738775 C T ITGB4 Silent p.I965I 0.35 TCGA-C5-A1BE-01 18 8380408 8380408 G A PTPRM Missense_Mutation p.D1301N 0.34 deleterious(0.02) possibly_damaging(0.882) TCGA-C5-A1BE-01 19 15533799 15533799 G A WIZ 3'UTR 0.17 TCGA-C5-A1BE-01 19 19822160 19822160 C G ZNF14 3'UTR 0.27 TCGA-C5-A1BE-01 19 36499193 36499193 C A SYNE4 Nonsense_Mutation p.E69* 0.08 TCGA-C5-A1BE-01 1 104160109 104160109 A T AMY2A Missense_Mutation p.Q16L 0.26 deleterious(0.03) possibly_damaging(0.792) TCGA-C5-A1BE-01 1 150935585 150935585 G T SETDB1 Missense_Mutation p.D1143Y 0.30 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-C5-A1BE-01 1 160156142 160156142 C T ATP1A4 Missense_Mutation p.R1016C 0.33 deleterious(0) possibly_damaging(0.894) TCGA-C5-A1BE-01 1 169798416 169798416 C T C1orf112 Silent p.L380L 0.33 TCGA-C5-A1BE-01 1 17396669 17396669 C T PADI2 Missense_Mutation p.G560R 0.34 deleterious(0) probably_damaging(0.971) TCGA-C5-A1BE-01 1 20234066 20234069 ACAA - OTUD3 Frame_Shift_Del p.K344Rfs*46 0.33 TCGA-C5-A1BE-01 1 215802256 215802256 G A USH2A Missense_Mutation p.S5140F 0.27 possibly_damaging(0.841) TCGA-C5-A1BE-01 1 44054441 44054441 G A PTPRF Missense_Mutation p.S240N 0.33 tolerated(0.45) benign(0.001) TCGA-C5-A1BE-01 1 45228219 45228219 A T KIF2C Missense_Mutation p.L620F 0.27 tolerated(0.4) benign(0.001) TCGA-C5-A1BE-01 1 67139031 67139031 G C SGIP1 Missense_Mutation p.D210H 0.31 tolerated(0.09) benign(0.259) TCGA-C5-A1BE-01 1 68954150 68954152 CTT - DEPDC1 In_Frame_Del p.E209del 0.20 TCGA-C5-A1BE-01 1 72400957 72400957 G A NEGR1 Silent p.L72L 0.36 TCGA-C5-A1BE-01 1 90048796 90048796 C T LRRC8B Missense_Mutation p.S196L 0.32 tolerated(0.13) benign(0.001) TCGA-C5-A1BE-01 1 90049129 90049129 C G LRRC8B Missense_Mutation p.S307C 0.29 tolerated(0.06) benign(0.401) TCGA-C5-A1BE-01 20 16486496 16486496 C T KIF16B Missense_Mutation p.D291N 0.44 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BE-01 20 32000556 32000556 T C SNTA1 Missense_Mutation p.D245G 0.33 tolerated(0.4) benign(0.28) TCGA-C5-A1BE-01 20 36470756 36470756 G C CTNNBL1 Missense_Mutation p.E443Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BE-01 20 42815230 42815230 G A JPH2 Missense_Mutation p.S39F 0.19 deleterious(0) probably_damaging(0.99) TCGA-C5-A1BE-01 20 57598816 57598816 C T TUBB1 Silent p.L112L 0.29 TCGA-C5-A1BE-01 2 163002166 163002166 G A GCG Silent p.H92H 0.34 TCGA-C5-A1BE-01 2 198948756 198948756 C T PLCL1 Missense_Mutation p.T172M 0.06 deleterious(0) probably_damaging(1) TCGA-C5-A1BE-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.82 tolerated(0.36) benign(0.4) TCGA-C5-A1BE-01 3 185191432 185191432 G C MAP3K13 Missense_Mutation p.Q771H 0.12 tolerated_low_confidence(0.21) benign(0.001) TCGA-C5-A1BE-01 3 195515364 195515364 G A MUC4 Silent p.D1029D 0.31 TCGA-C5-A1BE-01 3 32587353 32587353 C T DYNC1LI1 Missense_Mutation p.E109K 0.32 deleterious(0) benign(0.386) TCGA-C5-A1BE-01 4 149356645 149356645 C T NR3C2 Silent p.S456S 0.30 TCGA-C5-A1BE-01 4 176733194 176733194 G A GPM6A Intron 0.27 TCGA-C5-A1BE-01 4 184367413 184367413 G C CDKN2AIP Silent p.R192R 0.34 TCGA-C5-A1BE-01 5 115351368 115351368 G A AQPEP Missense_Mutation p.E888K 0.44 tolerated(0.29) possibly_damaging(0.831) TCGA-C5-A1BE-01 5 115351379 115351379 A C AQPEP Silent p.I891I 0.52 TCGA-C5-A1BE-01 6 108497844 108497844 G A NR2E1 Missense_Mutation p.A133T 0.27 tolerated(0.51) benign(0) TCGA-C5-A1BE-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.29 TCGA-C5-A1BE-01 6 25826752 25826752 C T SLC17A1 Silent p.V48V 0.33 TCGA-C5-A1BE-01 6 36979601 36979601 C T FGD2 Silent p.L166L 0.22 TCGA-C5-A1BE-01 6 45909283 45909283 C T CLIC5 Splice_Site p.X295_splice 0.30 TCGA-C5-A1BE-01 6 46661806 46661806 G C TDRD6 Missense_Mutation p.E1981Q 0.05 tolerated(0.16) benign(0.031) TCGA-C5-A1BE-01 7 23768836 23768836 C T STK31 Missense_Mutation p.P151S 0.39 tolerated(0.18) benign(0.342) TCGA-C5-A1BE-01 7 64292514 64292514 G C ZNF138 Missense_Mutation p.Q272H 0.25 deleterious(0) possibly_damaging(0.452) TCGA-C5-A1BE-01 8 139790622 139790622 C T COL22A1 Missense_Mutation p.G578R 0.27 unknown(0) TCGA-C5-A1BE-01 8 145057332 145057332 C G PARP10 Intron 0.15 TCGA-C5-A1BE-01 8 41563760 41563760 C A ANK1 Splice_Site p.X700_splice 0.40 TCGA-C5-A1BE-01 8 56436429 56436429 C T XKR4 Silent p.A532A 0.31 TCGA-C5-A1BE-01 8 70964459 70964459 A T PRDM14 Silent p.G523G 0.03 TCGA-C5-A1BE-01 9 125239426 125239427 - AAAT OR1J1 Frame_Shift_Ins p.F260Lfs*11 0.29 TCGA-C5-A1BE-01 9 18776905 18776905 C T ADAMTSL1 Missense_Mutation p.T893M 0.35 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BE-01 9 72071269 72071269 C T APBA1 Missense_Mutation p.R561Q 0.27 deleterious(0) possibly_damaging(0.756) TCGA-C5-A1BE-01 X 100609655 100609655 G C BTK Missense_Mutation p.Q532E 0.03 tolerated(0.08) benign(0.001) TCGA-C5-A1BE-01 X 108673542 108673542 G A GUCY2F Silent p.F595F 0.44 TCGA-C5-A1BE-01 X 118108738 118108738 C G LONRF3 5'UTR 0.62 TCGA-C5-A1BE-01 X 118222151 118222151 C G KIAA1210 Silent p.V1014V 0.38 TCGA-C5-A1BE-01 X 129769012 129769012 T C ENOX2 Silent p.K484K 0.43 TCGA-C5-A1BE-01 X 135582899 135582899 G C HTATSF1 Missense_Mutation p.Q164H 0.44 tolerated(0.08) benign(0.03) TCGA-C5-A1BE-01 X 142967284 142967284 G A UBE2NL Missense_Mutation p.D28N 0.21 tolerated(0.27) benign(0.096) TCGA-C5-A1BE-01 X 152135716 152135716 G A ZNF185 Missense_Mutation p.S633N 0.06 tolerated(0.16) possibly_damaging(0.71) TCGA-C5-A1BE-01 X 152482140 152482140 G A MAGEA1 Missense_Mutation p.R291C 0.23 deleterious(0.03) possibly_damaging(0.519) TCGA-C5-A1BE-01 X 153217996 153217996 C T HCFC1 Silent p.A1637A 0.21 TCGA-C5-A1BE-01 X 52681347 52681347 G T SSX7 Missense_Mutation p.L79I 0.21 tolerated(0.36) benign(0.004) TCGA-C5-A1BE-01 X 70321381 70321381 T C FOXO4 Missense_Mutation p.I434T 0.13 tolerated(0.39) benign(0.001) TCGA-C5-A1BE-01 X 77150816 77150816 C A MAGT1 Missense_Mutation p.R63I 0.20 tolerated(0.06) benign(0.142) TCGA-C5-A1BF-01 10 101090617 101090617 C T CNNM1 Silent p.D491D 0.30 TCGA-C5-A1BF-01 10 135195106 135195106 G C PAOX Missense_Mutation p.E271Q 0.27 deleterious(0.02) probably_damaging(0.99) TCGA-C5-A1BF-01 10 37508313 37508313 A T ANKRD30A Missense_Mutation p.I1169F 0.35 tolerated(0.05) benign(0.064) TCGA-C5-A1BF-01 10 55581697 55581697 G C PCDH15 Missense_Mutation p.S1932C 0.04 deleterious_low_confidence(0) unknown(0) TCGA-C5-A1BF-01 10 76430010 76430010 G C ADK Missense_Mutation p.G316A 0.04 deleterious(0) probably_damaging(0.993) TCGA-C5-A1BF-01 11 111635535 111635535 A G PPP2R1B Silent p.C100C 0.60 TCGA-C5-A1BF-01 11 111795061 111795061 C G C11orf52 Nonsense_Mutation p.S15* 0.32 TCGA-C5-A1BF-01 11 17426064 17426064 C T ABCC8 Silent p.A1184A 0.06 TCGA-C5-A1BF-01 11 61291945 61291945 G A SYT7 Missense_Mutation p.R303C 0.33 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BF-01 11 65266070 65266070 C T MALAT1 RNA 0.15 TCGA-C5-A1BF-01 12 100649885 100649885 G C DEPDC4 Missense_Mutation p.L274V 0.18 tolerated(0.07) possibly_damaging(0.706) TCGA-C5-A1BF-01 12 120650348 120650348 G A PXN Silent p.F529F 0.12 TCGA-C5-A1BF-01 12 122690993 122690993 C T B3GNT4 Silent p.F65F 0.06 TCGA-C5-A1BF-01 12 122691461 122691461 C A B3GNT4 Silent p.V221V 0.05 TCGA-C5-A1BF-01 12 122693005 122693005 C T DIABLO Missense_Mutation p.E215K 0.07 deleterious(0) probably_damaging(1) TCGA-C5-A1BF-01 12 43945017 43945017 C T ADAMTS20 Missense_Mutation p.E50K 0.16 deleterious(0.03) probably_damaging(0.947) TCGA-C5-A1BF-01 12 49666957 49666957 G C TUBA1C Missense_Mutation p.E433Q 0.04 deleterious_low_confidence(0.03) unknown(0) TCGA-C5-A1BF-01 12 50347951 50347951 C T AQP2 Missense_Mutation p.T125M 0.21 deleterious(0.04) probably_damaging(0.965) TCGA-C5-A1BF-01 12 56637832 56637832 C G ANKRD52 Intron 0.36 TCGA-C5-A1BF-01 13 115090342 115090342 C G CHAMP1 Missense_Mutation p.S342C 0.05 deleterious(0.02) possibly_damaging(0.776) TCGA-C5-A1BF-01 13 50098334 50098334 G C PHF11 Missense_Mutation p.E251Q 0.05 deleterious(0.01) possibly_damaging(0.564) TCGA-C5-A1BF-01 13 88328010 88328010 G A SLITRK5 Missense_Mutation p.G123R 0.29 deleterious(0.04) probably_damaging(1) TCGA-C5-A1BF-01 14 68265155 68265155 C T ZFYVE26 Silent p.K608K 0.38 TCGA-C5-A1BF-01 15 50546436 50546436 G C HDC Missense_Mutation p.S204C 0.17 tolerated(0.11) probably_damaging(0.982) TCGA-C5-A1BF-01 16 20996705 20996705 G A DNAH3 Silent p.Y2453Y 0.35 TCGA-C5-A1BF-01 16 22343428 22343428 C G POLR3E Silent p.R664R 0.36 TCGA-C5-A1BF-01 16 30768370 30768370 A C PHKG2 Silent p.G391G 0.08 TCGA-C5-A1BF-01 16 31382737 31382737 C T ITGAX Nonsense_Mutation p.Q642* 0.35 TCGA-C5-A1BF-01 16 4936024 4936024 C G PPL Missense_Mutation p.E878Q 0.32 tolerated(0.21) benign(0.061) TCGA-C5-A1BF-01 17 33348478 33348478 C A RFFL Missense_Mutation p.S168I 0.31 tolerated(0.05) benign(0.128) TCGA-C5-A1BF-01 17 48445358 48445358 C T MRPL27 3'UTR 0.50 TCGA-C5-A1BF-01 17 5485360 5485360 G A NLRP1 Silent p.Y157Y 0.34 TCGA-C5-A1BF-01 17 686413 686413 C G RNMTL1 Silent p.L135L 0.25 TCGA-C5-A1BF-01 17 982630 982630 C - ABR Frame_Shift_Del p.E214Nfs*4 0.41 TCGA-C5-A1BF-01 18 28742592 28742592 G T DSC1 5'UTR 0.17 TCGA-C5-A1BF-01 19 1207060 1207061 - TGATGGGG STK11 Frame_Shift_Ins p.D53* 0.32 TCGA-C5-A1BF-01 19 14876498 14876498 C T EMR2 Silent p.P251P 0.29 TCGA-C5-A1BF-01 19 4174895 4174895 T G SIRT6 Missense_Mutation p.T263P 0.35 tolerated(0.09) benign(0.09) TCGA-C5-A1BF-01 19 44351765 44351765 G C ZNF283 Missense_Mutation p.E338Q 0.35 tolerated(1) benign(0.168) TCGA-C5-A1BF-01 1 102290786 102290786 T A OLFM3 Missense_Mutation p.M130L 0.12 tolerated(0.18) possibly_damaging(0.651) TCGA-C5-A1BF-01 1 146658400 146658400 G C FMO5 3'UTR 0.17 TCGA-C5-A1BF-01 1 154548435 154548435 C T CHRNB2 3'UTR 0.14 TCGA-C5-A1BF-01 1 155291357 155291357 C G RUSC1 Intron 0.13 TCGA-C5-A1BF-01 1 155580332 155580332 C G MSTO1 Silent p.L67L 0.21 TCGA-C5-A1BF-01 1 179363044 179363044 G C AXDND1 Missense_Mutation p.R290S 0.24 deleterious(0) possibly_damaging(0.849) TCGA-C5-A1BF-01 1 186277493 186277493 C T PRG4 Missense_Mutation p.S881F 0.12 unknown(0) TCGA-C5-A1BF-01 1 186277798 186277798 C T PRG4 Missense_Mutation p.P983S 0.11 unknown(0) TCGA-C5-A1BF-01 1 20141324 20141324 C T RNF186 Missense_Mutation p.V91I 0.30 tolerated(0.05) benign(0.032) TCGA-C5-A1BF-01 1 230486821 230486821 C T PGBD5 Silent p.L190L 0.16 TCGA-C5-A1BF-01 1 24483816 24483816 G A IFNLR1 Missense_Mutation p.P456L 0.24 tolerated(0.06) benign(0.139) TCGA-C5-A1BF-01 1 979098 979098 C T AGRN Missense_Mutation p.S595L 0.07 deleterious(0.03) possibly_damaging(0.899) TCGA-C5-A1BF-01 22 24724888 24724888 G T SPECC1L Splice_Site p.X740_splice 0.12 TCGA-C5-A1BF-01 22 30032737 30032743 CAGATGA - NF2 Splice_Site p.X39_splice 0.48 TCGA-C5-A1BF-01 22 31741282 31741282 C G PATZ1 Missense_Mutation p.E103Q 0.32 deleterious_low_confidence(0) benign(0.189) TCGA-C5-A1BF-01 22 31859712 31859712 C G EIF4ENIF1 Missense_Mutation p.L180F 0.72 tolerated(0.71) benign(0.354) TCGA-C5-A1BF-01 2 105954074 105954074 C T C2orf49 Silent p.C10C 0.36 TCGA-C5-A1BF-01 2 109347309 109347309 G A RANBP2 Missense_Mutation p.E74K 0.32 tolerated(0.24) benign(0.016) TCGA-C5-A1BF-01 2 152586147 152586147 G A NEB Silent p.Y20Y 0.32 TCGA-C5-A1BF-01 2 179612941 179612941 T C TTN Intron 0.45 TCGA-C5-A1BF-01 2 225637916 225637916 C G DOCK10 Missense_Mutation p.M2054I 0.31 tolerated(0.06) possibly_damaging(0.555) TCGA-C5-A1BF-01 2 32432000 32432000 G C SLC30A6 Missense_Mutation p.E312Q 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-C5-A1BF-01 2 32757248 32757248 G T BIRC6 Intron 0.29 TCGA-C5-A1BF-01 3 140407216 140407216 C T TRIM42 Silent p.P564P 0.07 TCGA-C5-A1BF-01 3 197665535 197665535 G C IQCG Missense_Mutation p.I133M 0.05 tolerated(0.13) benign(0.04) TCGA-C5-A1BF-01 3 44951664 44951664 G C TGM4 Missense_Mutation p.E470D 0.60 tolerated(0.31) benign(0.298) TCGA-C5-A1BF-01 3 49160390 49160390 G C LAMB2 Silent p.L1440L 0.44 TCGA-C5-A1BF-01 3 49161416 49161416 G A LAMB2 Missense_Mutation p.S1181L 0.61 deleterious(0.04) probably_damaging(0.934) TCGA-C5-A1BF-01 4 146059410 146059410 C T OTUD4 Silent p.Q774Q 0.25 TCGA-C5-A1BF-01 4 172735776 172735776 C G GALNTL6 Missense_Mutation p.F15L 0.26 tolerated(0.95) benign(0.001) TCGA-C5-A1BF-01 4 175564951 175564951 G C GLRA3 Missense_Mutation p.Q461E 0.18 deleterious_low_confidence(0.04) benign(0.044) TCGA-C5-A1BF-01 4 187540216 187540217 - T FAT1 Frame_Shift_Ins p.H2508Qfs*27 0.26 TCGA-C5-A1BF-01 4 187629360 187629360 G C FAT1 Nonsense_Mutation p.S541* 0.35 TCGA-C5-A1BF-01 4 56831889 56831889 C G CEP135 Missense_Mutation p.S303C 0.28 deleterious(0) possibly_damaging(0.605) TCGA-C5-A1BF-01 4 66189804 66189804 C G EPHA5 3'UTR 0.07 TCGA-C5-A1BF-01 4 66189876 66189876 G A EPHA5 Nonsense_Mutation p.Q1024* 0.09 TCGA-C5-A1BF-01 5 118866973 118866973 C T HSD17B4 Nonsense_Mutation p.Q648* 0.29 TCGA-C5-A1BF-01 5 140228212 140228212 C T PCDHA9 Silent p.F44F 0.29 TCGA-C5-A1BF-01 5 16067780 16067780 C G MARCH11 Missense_Mutation p.E337Q 0.20 tolerated(0.12) benign(0.171) TCGA-C5-A1BF-01 5 58652707 58652707 G A PDE4D Intron 0.45 TCGA-C5-A1BF-01 5 74677813 74677813 C T COL4A3BP Nonsense_Mutation p.W654* 0.15 TCGA-C5-A1BF-01 5 90074397 90074397 G C GPR98 Missense_Mutation p.E4274Q 0.33 benign(0.318) TCGA-C5-A1BF-01 6 2955781 2955781 C T SERPINB6 Missense_Mutation p.E97K 0.18 deleterious(0) probably_damaging(0.994) TCGA-C5-A1BF-01 6 56458919 56458919 C G DST Missense_Mutation p.E1467Q 0.19 possibly_damaging(0.72) TCGA-C5-A1BF-01 6 87795485 87795485 G C CGA Missense_Mutation p.H114D 0.10 deleterious(0) probably_damaging(0.954) TCGA-C5-A1BF-01 7 107393876 107393876 G C CBLL1 Missense_Mutation p.E68Q 0.25 deleterious(0.01) possibly_damaging(0.678) TCGA-C5-A1BF-01 7 143039071 143039071 G T CLCN1 Silent p.V544V 0.32 TCGA-C5-A1BF-01 7 42004984 42004984 C G GLI3 Missense_Mutation p.L1229F 0.21 tolerated_low_confidence(0.09) benign(0.004) TCGA-C5-A1BF-01 7 75046089 75046089 C A POM121C 3'UTR 0.31 TCGA-C5-A1BF-01 8 146279632 146279632 C A C8orf33 3'UTR 0.32 TCGA-C5-A1BF-01 8 72936146 72936146 G A TRPA1 Missense_Mutation p.H1018Y 0.30 tolerated(1) benign(0.034) TCGA-C5-A1BF-01 8 9563734 9563734 C T TNKS Missense_Mutation p.H414Y 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-C5-A1BF-01 9 107550317 107550317 G A ABCA1 Missense_Mutation p.R2030W 0.33 deleterious(0) probably_damaging(0.987) TCGA-C5-A1BF-01 9 125582285 125582285 G A PDCL 3'UTR 0.35 TCGA-C5-A1BF-01 9 134353258 134353258 G A PRRC2B Missense_Mutation p.E1512K 0.46 tolerated(0.05) possibly_damaging(0.529) TCGA-C5-A1BF-01 9 139393593 139393594 - A NOTCH1 Frame_Shift_Ins p.H2018Lfs*9 0.37 TCGA-C5-A1BF-01 X 120009217 120009217 G A CT47B1 Missense_Mutation p.A103V 0.35 tolerated(0.21) possibly_damaging(0.815) TCGA-C5-A1BF-01 X 129263346 129263346 G C AIFM1 3'UTR 0.22 TCGA-C5-A1BF-01 X 152991452 152991452 C T ABCD1 Missense_Mutation p.S244L 0.13 tolerated(0.7) benign(0.009) TCGA-C5-A1BF-01 X 53105861 53105861 G A GPR173 Missense_Mutation p.A20T 0.07 tolerated_low_confidence(0.57) benign(0.004) TCGA-C5-A1BF-01 X 53658567 53658567 C G HUWE1 Splice_Site p.X216_splice 0.09 TCGA-C5-A1BI-01 10 100374769 100374769 C T HPSE2 Silent p.L404L 0.08 TCGA-C5-A1BI-01 10 134219238 134219238 G A PWWP2B Missense_Mutation p.E412K 0.08 tolerated(1) benign(0.001) TCGA-C5-A1BI-01 10 50819080 50819080 G A SLC18A3 Silent p.S98S 0.06 TCGA-C5-A1BI-01 10 95848926 95848926 C T PLCE1 Intron 0.16 TCGA-C5-A1BI-01 11 103908368 103908368 C T DDI1 Missense_Mutation p.A273V 0.11 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BI-01 11 111572232 111572232 G A SIK2 Silent p.P220P 0.12 TCGA-C5-A1BI-01 11 117163788 117163788 C G BACE1 Silent p.L274L 0.12 TCGA-C5-A1BI-01 11 117163829 117163829 C T BACE1 Missense_Mutation p.E261K 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-C5-A1BI-01 11 12316100 12316100 C T MICALCL Silent p.L374L 0.16 TCGA-C5-A1BI-01 11 124743605 124743605 T C ROBO3 Missense_Mutation p.V544A 0.15 tolerated(0.81) benign(0.001) TCGA-C5-A1BI-01 11 124805956 124805956 C G HEPACAM 5'UTR 0.31 TCGA-C5-A1BI-01 11 3716727 3716727 G A NUP98 Silent p.F1373F 0.17 TCGA-C5-A1BI-01 11 57156480 57156480 C T PRG2 Intron 0.13 TCGA-C5-A1BI-01 11 61300491 61300491 G A SYT7 Silent p.L182L 0.16 TCGA-C5-A1BI-01 11 62560166 62560166 G C NXF1 Missense_Mutation p.Q590E 0.07 tolerated(0.49) benign(0.023) TCGA-C5-A1BI-01 11 72005439 72005439 T C CLPB Missense_Mutation p.Y567C 0.12 deleterious(0) possibly_damaging(0.883) TCGA-C5-A1BI-01 11 94326762 94326762 G A PIWIL4 Missense_Mutation p.E369K 0.14 tolerated(0.53) benign(0.014) TCGA-C5-A1BI-01 11 9534079 9534079 C - ZNF143 Frame_Shift_Del p.T488Qfs*2 0.22 TCGA-C5-A1BI-01 11 9803164 9803164 C T SBF2 Missense_Mutation p.E1781K 0.08 tolerated(0.14) benign(0.315) TCGA-C5-A1BI-01 12 118615108 118615108 C T TAOK3 Silent p.K531K 0.11 TCGA-C5-A1BI-01 12 274981 274981 G A IQSEC3 Missense_Mutation p.E966K 0.11 deleterious(0) possibly_damaging(0.905) TCGA-C5-A1BI-01 12 50528463 50528463 C T CERS5 Missense_Mutation p.E299K 0.14 deleterious(0.01) benign(0.088) TCGA-C5-A1BI-01 12 56087878 56087878 G A ITGA7 Missense_Mutation p.S825F 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-C5-A1BI-01 12 6710828 6710828 G A CHD4 Silent p.F181F 0.13 TCGA-C5-A1BI-01 12 7945646 7945646 C T NANOG Silent p.V84V 0.19 TCGA-C5-A1BI-01 13 102344970 102344970 C T ITGBL1 Missense_Mutation p.P351S 0.13 deleterious(0.02) benign(0.282) TCGA-C5-A1BI-01 13 32836601 32836601 G A FRY Missense_Mutation p.E2590K 0.18 tolerated_low_confidence(0.3) benign(0.001) TCGA-C5-A1BI-01 14 21216063 21216063 G C EDDM3A Missense_Mutation p.E108D 0.15 tolerated(0.22) probably_damaging(0.987) TCGA-C5-A1BI-01 14 23900167 23900167 C T MYH7 Missense_Mutation p.E280K 0.11 deleterious(0.01) possibly_damaging(0.817) TCGA-C5-A1BI-01 14 61446334 61446334 G A TRMT5 Silent p.V94V 0.13 TCGA-C5-A1BI-01 14 94088400 94088400 G T UNC79 Silent p.L1430L 0.10 TCGA-C5-A1BI-01 15 41962122 41962122 G A MGA Missense_Mutation p.E344K 0.21 deleterious(0.04) possibly_damaging(0.715) TCGA-C5-A1BI-01 15 44811464 44811464 G C CTDSPL2 Missense_Mutation p.D404H 0.12 deleterious(0) probably_damaging(1) TCGA-C5-A1BI-01 15 50782647 50782647 C A USP8 Missense_Mutation p.P720Q 0.12 deleterious(0) probably_damaging(0.994) TCGA-C5-A1BI-01 15 68583140 68583140 C T FEM1B Missense_Mutation p.R482C 0.13 deleterious(0) benign(0.425) TCGA-C5-A1BI-01 15 73615839 73615839 G A HCN4 Silent p.F865F 0.17 TCGA-C5-A1BI-01 15 85451977 85451977 C T SLC28A1 Missense_Mutation p.S249F 0.21 deleterious(0) probably_damaging(0.975) TCGA-C5-A1BI-01 15 86189140 86189140 C G AKAP13 Silent p.L1443L 0.16 TCGA-C5-A1BI-01 16 18859259 18859259 G A SMG1 Missense_Mutation p.S1907F 0.17 deleterious(0.02) possibly_damaging(0.459) TCGA-C5-A1BI-01 16 29826035 29826035 C T PRRT2 3'UTR 0.07 TCGA-C5-A1BI-01 16 31073360 31073360 G A ZNF668 Missense_Mutation p.R320C 0.20 deleterious(0) probably_damaging(0.978) TCGA-C5-A1BI-01 16 76513385 76513385 C T CNTNAP4 Missense_Mutation p.S538L 0.05 tolerated(0.3) benign(0.028) TCGA-C5-A1BI-01 16 89985855 89985855 C T MC1R Silent p.I63I 0.13 TCGA-C5-A1BI-01 17 1639342 1639342 C T WDR81 Nonsense_Mutation p.R1779* 0.12 TCGA-C5-A1BI-01 17 18045516 18045516 C G MYO15A Missense_Mutation p.L1925V 0.16 unknown(0) TCGA-C5-A1BI-01 17 20224971 20224971 G A AC004702.2 Intron 0.12 TCGA-C5-A1BI-01 17 3195210 3195210 G A OR3A1 Missense_Mutation p.H223Y 0.09 tolerated(0.5) benign(0.119) TCGA-C5-A1BI-01 17 40475064 40475064 C T STAT3 Missense_Mutation p.E616K 0.13 deleterious(0.04) benign(0.074) TCGA-C5-A1BI-01 17 41215378 41215378 G A BRCA1 Missense_Mutation p.S1743F 0.16 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BI-01 17 57287571 57287571 C A SMG8 Missense_Mutation p.F53L 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-C5-A1BI-01 17 62892842 62892842 C G LRRC37A3 Missense_Mutation p.Q178H 0.11 deleterious(0.01) benign(0.001) TCGA-C5-A1BI-01 17 72767864 72767864 C T NAT9 Silent p.%3D 0.24 TCGA-C5-A1BI-01 17 73624482 73624482 G A RECQL5 Missense_Mutation p.S874L 0.15 tolerated(0.11) benign(0.003) TCGA-C5-A1BI-01 17 7534569 7534569 G C SHBG Missense_Mutation p.E149Q 0.18 deleterious(0.03) benign(0.26) TCGA-C5-A1BI-01 17 8168914 8168914 C G PFAS Missense_Mutation p.I834M 0.08 deleterious(0) probably_damaging(0.973) TCGA-C5-A1BI-01 18 32887449 32887449 C T ZNF271 RNA 0.11 TCGA-C5-A1BI-01 18 32887460 32887460 C T ZNF271 RNA 0.14 TCGA-C5-A1BI-01 18 32887561 32887561 C G ZNF271 RNA 0.15 TCGA-C5-A1BI-01 19 18378221 18378221 G C KIAA1683 Silent p.L43L 0.09 TCGA-C5-A1BI-01 19 32954774 32954774 G C DPY19L3 Splice_Site p.X482_splice 0.13 TCGA-C5-A1BI-01 19 33502623 33502623 G A RHPN2 Silent p.F185F 0.18 TCGA-C5-A1BI-01 19 36271142 36271142 C T ARHGAP33 Silent p.L177L 0.15 TCGA-C5-A1BI-01 19 38229932 38229932 G C ZNF573 Missense_Mutation p.Q487E 0.17 tolerated(0.41) probably_damaging(0.969) TCGA-C5-A1BI-01 19 41759596 41759596 G C AXL Silent p.L673L 0.14 TCGA-C5-A1BI-01 19 53473222 53473222 C - ZNF702P RNA 0.08 TCGA-C5-A1BI-01 19 54259998 54259998 C T MIR516A1 RNA 0.15 TCGA-C5-A1BI-01 19 58233778 58233778 G A ZNF671 Silent p.V98V 0.17 TCGA-C5-A1BI-01 19 6901986 6901986 C T EMR1 Silent p.S205S 0.14 TCGA-C5-A1BI-01 19 7671660 7671660 C T CAMSAP3 Intron 0.17 TCGA-C5-A1BI-01 1 107867489 107867489 G A NTNG1 Missense_Mutation p.E278K 0.14 tolerated(0.1) benign(0.302) TCGA-C5-A1BI-01 1 109740254 109740254 C T KIAA1324 Silent p.V760V 0.09 TCGA-C5-A1BI-01 1 145532812 145532812 C T ITGA10 Silent p.F377F 0.18 TCGA-C5-A1BI-01 1 150463973 150463973 C T TARS2 Missense_Mutation p.R206C 0.10 deleterious(0.02) benign(0.006) TCGA-C5-A1BI-01 1 155720297 155720297 C T GON4L 3'UTR 0.19 TCGA-C5-A1BI-01 1 158369020 158369020 G A OR10T2 Silent p.I79I 0.08 TCGA-C5-A1BI-01 1 166973503 166973503 C G MAEL Missense_Mutation p.H204D 0.10 deleterious(0.01) benign(0.04) TCGA-C5-A1BI-01 1 179989083 179989083 G A CEP350 Splice_Site p.X725_splice 0.14 TCGA-C5-A1BI-01 1 183111854 183111854 C T LAMC1 Missense_Mutation p.R1587C 0.16 deleterious(0.03) benign(0.163) TCGA-C5-A1BI-01 1 193029028 193029028 G A UCHL5 5'Flank 0.18 TCGA-C5-A1BI-01 1 202119400 202119400 C T PTPN7 Intron 0.21 TCGA-C5-A1BI-01 1 237890472 237890472 G A RYR2 Missense_Mutation p.R3604Q 0.12 probably_damaging(0.941) TCGA-C5-A1BI-01 1 39333265 39333265 C T MYCBP Missense_Mutation p.E36K 0.17 deleterious(0.03) benign(0.204) TCGA-C5-A1BI-01 1 6680012 6680012 C G PHF13 Silent p.L97L 0.07 TCGA-C5-A1BI-01 1 85279475 85279475 C T LPAR3 3'UTR 0.14 TCGA-C5-A1BI-01 1 92184977 92184977 G A TGFBR3 Silent p.T486T 0.11 TCGA-C5-A1BI-01 1 93812311 93812311 G C DR1 Missense_Mutation p.E37Q 0.11 deleterious(0.01) possibly_damaging(0.848) TCGA-C5-A1BI-01 1 93812394 93812394 G C DR1 Missense_Mutation p.K64N 0.08 deleterious(0) probably_damaging(0.996) TCGA-C5-A1BI-01 20 13899729 13899729 G A SEL1L2 Silent p.D108D 0.12 TCGA-C5-A1BI-01 20 16485148 16485148 G C KIF16B Missense_Mutation p.L349V 0.15 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BI-01 20 30746296 30746296 C T TM9SF4 Silent p.I516I 0.06 TCGA-C5-A1BI-01 20 50776785 50776785 C T ZFP64 Missense_Mutation p.D214N 0.11 deleterious(0) probably_damaging(0.993) TCGA-C5-A1BI-01 20 55027331 55027331 G C CASS4 Missense_Mutation p.E367Q 0.14 tolerated(0.21) benign(0.015) TCGA-C5-A1BI-01 21 32638880 32638880 C A TIAM1 Missense_Mutation p.D137Y 0.15 deleterious_low_confidence(0.02) benign(0.11) TCGA-C5-A1BI-01 21 40568805 40568805 C T BRWD1 Missense_Mutation p.E2064K 0.14 tolerated_low_confidence(0.21) benign(0.002) TCGA-C5-A1BI-01 21 42812922 42812922 G C MX1 Missense_Mutation p.E234Q 0.17 tolerated(0.07) benign(0.271) TCGA-C5-A1BI-01 22 19839483 19839483 C T C22orf29 Missense_Mutation p.G101D 0.15 tolerated(0.27) possibly_damaging(0.774) TCGA-C5-A1BI-01 22 21119489 21119489 C G PI4KA Missense_Mutation p.E825Q 0.11 tolerated(0.17) benign(0.298) TCGA-C5-A1BI-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.17 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BI-01 22 37485664 37485664 C T TMPRSS6 Missense_Mutation p.A273T 0.33 tolerated(0.2) benign(0.081) TCGA-C5-A1BI-01 22 42483075 42483075 G A NDUFA6 Silent p.L108L 0.12 TCGA-C5-A1BI-01 22 45278961 45278961 C T PHF21B 3'UTR 0.19 TCGA-C5-A1BI-01 2 107460106 107460106 C G ST6GAL2 Missense_Mutation p.E110Q 0.13 benign(0.062) TCGA-C5-A1BI-01 2 107460390 107460390 C T ST6GAL2 Missense_Mutation p.G15E 0.24 probably_damaging(0.985) TCGA-C5-A1BI-01 2 130953801 130953801 G A TUBA3E Silent p.F49F 0.20 TCGA-C5-A1BI-01 2 152472532 152472532 C G NEB Missense_Mutation p.R3758T 0.28 probably_damaging(0.999) TCGA-C5-A1BI-01 2 152518812 152518812 C T NEB Missense_Mutation p.G1936E 0.12 probably_damaging(1) TCGA-C5-A1BI-01 2 179612885 179612885 G C TTN Intron 0.16 TCGA-C5-A1BI-01 2 179614188 179614188 C T TTN Intron 0.15 TCGA-C5-A1BI-01 2 191855956 191855956 C G STAT1 Missense_Mutation p.L345F 0.13 deleterious(0.01) possibly_damaging(0.837) TCGA-C5-A1BI-01 2 20478361 20478361 G A PUM2 Missense_Mutation p.S647L 0.17 tolerated(0.06) possibly_damaging(0.804) TCGA-C5-A1BI-01 2 210892058 210892058 G C KANSL1L Missense_Mutation p.L805V 0.09 deleterious(0.01) probably_damaging(0.942) TCGA-C5-A1BI-01 2 234628184 234628184 C G UGT1A4 Missense_Mutation p.Q240E 0.14 tolerated(0.1) benign(0.019) TCGA-C5-A1BI-01 2 39499440 39499440 C T MAP4K3 Missense_Mutation p.D653N 0.15 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BI-01 2 44079964 44079964 C T ABCG8 Silent p.I307I 0.11 TCGA-C5-A1BI-01 2 80101289 80101289 C G CTNNA2 Missense_Mutation p.Q225E 0.15 deleterious(0.01) benign(0.017) TCGA-C5-A1BI-01 3 101390764 101390764 C G ZBTB11 Intron 0.12 TCGA-C5-A1BI-01 3 120122095 120122095 C G FSTL1 Missense_Mutation p.E230Q 0.15 tolerated(0.17) benign(0.071) TCGA-C5-A1BI-01 3 432680 432680 C T CHL1 Missense_Mutation p.H877Y 0.17 tolerated(1) benign(0.007) TCGA-C5-A1BI-01 3 44490124 44490124 C T ZNF445 Missense_Mutation p.E347K 0.16 tolerated(0.1) benign(0.292) TCGA-C5-A1BI-01 4 71655391 71655391 G A RUFY3 Intron 0.08 TCGA-C5-A1BI-01 4 76439453 76439453 C T RCHY1 Missense_Mutation p.R15Q 0.19 tolerated(0.5) benign(0) TCGA-C5-A1BI-01 4 77272920 77272920 C G CCDC158 Missense_Mutation p.E831Q 0.07 deleterious(0.01) probably_damaging(0.986) TCGA-C5-A1BI-01 4 90169399 90169399 C T GPRIN3 Silent p.K621K 0.12 TCGA-C5-A1BI-01 5 102262314 102262314 G A PAM Silent p.E156E 0.17 TCGA-C5-A1BI-01 5 115298713 115298713 C T AQPEP Silent p.I133I 0.12 TCGA-C5-A1BI-01 5 135391395 135391395 C T TGFBI Silent p.I479I 0.08 TCGA-C5-A1BI-01 5 140532130 140532130 C T PCDHB6 Silent p.F764F 0.10 TCGA-C5-A1BI-01 5 173376973 173376973 C T CPEB4 Silent p.F519F 0.12 TCGA-C5-A1BI-01 5 179731829 179731829 C T GFPT2 Missense_Mutation p.M595I 0.12 deleterious(0) benign(0.043) TCGA-C5-A1BI-01 5 5232548 5232548 C T ADAMTS16 Missense_Mutation p.S590L 0.15 deleterious(0) probably_damaging(0.991) TCGA-C5-A1BI-01 5 5306632 5306632 G A ADAMTS16 Missense_Mutation p.E1068K 0.10 deleterious(0.01) benign(0.158) TCGA-C5-A1BI-01 5 56209780 56209780 C T SETD9 Silent p.L224L 0.12 TCGA-C5-A1BI-01 5 76028349 76028349 G C F2R Missense_Mutation p.W100S 0.13 deleterious(0) possibly_damaging(0.889) TCGA-C5-A1BI-01 6 123369870 123369870 G A CLVS2 Missense_Mutation p.R223Q 0.15 tolerated(0.19) benign(0.105) TCGA-C5-A1BI-01 6 146256116 146256116 G A SHPRH Missense_Mutation p.P973S 0.26 deleterious(0) probably_damaging(1) TCGA-C5-A1BI-01 6 158323021 158323021 C A SNX9 Silent p.G188G 0.07 TCGA-C5-A1BI-01 6 159457435 159457435 C T TAGAP Silent p.P540P 0.16 TCGA-C5-A1BI-01 6 27798995 27798995 C G HIST1H4K Nonstop_Mutation p.*104Sext*? 0.14 TCGA-C5-A1BI-01 6 31868750 31868750 C T ZBTB12 Silent p.Q111Q 0.18 TCGA-C5-A1BI-01 6 75975015 75975015 G A TMEM30A Nonsense_Mutation p.Q129* 0.19 TCGA-C5-A1BI-01 6 84913788 84913788 C T KIAA1009 Missense_Mutation p.E200K 0.12 deleterious(0.04) benign(0.276) TCGA-C5-A1BI-01 7 100677708 100677708 C G MUC17 Nonsense_Mutation p.S1004* 0.05 TCGA-C5-A1BI-01 7 111508135 111508135 C T DOCK4 Missense_Mutation p.E729K 0.14 deleterious(0.04) probably_damaging(0.96) TCGA-C5-A1BI-01 7 148487457 148487457 G A CUL1 Missense_Mutation p.R577Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BI-01 7 21765513 21765513 G A DNAH11 Missense_Mutation p.D2458N 0.12 probably_damaging(1) TCGA-C5-A1BI-01 7 23808627 23808627 C G STK31 Missense_Mutation p.S477C 0.09 deleterious(0) probably_damaging(0.95) TCGA-C5-A1BI-01 7 44152195 44152195 G C AEBP1 Missense_Mutation p.E752D 0.17 tolerated(0.22) benign(0.09) TCGA-C5-A1BI-01 7 64864655 64864655 A G ZNF92 Missense_Mutation p.D543G 0.12 tolerated(1) benign(0.007) TCGA-C5-A1BI-01 7 99564616 99564616 C A AZGP1 3'UTR 0.11 TCGA-C5-A1BI-01 8 86124418 86124418 G A E2F5 Missense_Mutation p.D304N 0.05 deleterious(0.02) benign(0.347) TCGA-C5-A1BI-01 9 129981169 129981169 C T RALGPS1 3'UTR 0.15 TCGA-C5-A1BI-01 9 131331147 131331147 G A SPTAN1 Missense_Mutation p.E112K 0.13 tolerated(0.12) benign(0.298) TCGA-C5-A1BI-01 9 132576379 132576379 C G TOR1A Missense_Mutation p.E291Q 0.13 tolerated(0.52) benign(0.06) TCGA-C5-A1BI-01 9 132595863 132595863 G A C9orf78 Intron 0.12 TCGA-C5-A1BI-01 9 135202135 135202135 G A SETX Missense_Mutation p.S1617F 0.16 tolerated(0.37) benign(0.027) TCGA-C5-A1BI-01 9 79840896 79840896 G T VPS13A Nonsense_Mutation p.E406* 0.11 TCGA-C5-A1BI-01 9 99795320 99795320 C G CTSV Missense_Mutation p.E306Q 0.22 tolerated(0.47) benign(0.004) TCGA-C5-A1BI-01 X 100604945 100604945 C G BTK Splice_Site p.X637_splice 0.15 TCGA-C5-A1BI-01 X 107834847 107834847 G A COL4A5 Missense_Mutation p.G466R 0.12 unknown(0) TCGA-C5-A1BI-01 X 130410033 130410033 C G IGSF1 Missense_Mutation p.G938A 0.13 tolerated(0.09) benign(0.167) TCGA-C5-A1BI-01 X 147733590 147733590 G A AFF2 Missense_Mutation p.E40K 0.09 deleterious(0) probably_damaging(0.987) TCGA-C5-A1BI-01 X 18748335 18748335 G A PPEF1 Missense_Mutation p.R28Q 0.11 deleterious(0) probably_damaging(1) TCGA-C5-A1BI-01 X 33357473 33357473 C T DMD 5'UTR 0.16 TCGA-C5-A1BI-01 X 37312800 37312800 G A PRRG1 Missense_Mutation p.E195K 0.10 tolerated(0.92) benign(0.022) TCGA-C5-A1BI-01 X 49032207 49032207 C T PRICKLE3 Missense_Mutation p.E555K 0.17 deleterious_low_confidence(0.03) probably_damaging(0.955) TCGA-C5-A1BI-01 X 5811015 5811015 C T NLGN4X Missense_Mutation p.R765H 0.16 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-C5-A1BI-01 X 64722635 64722635 C T ZC3H12B Missense_Mutation p.P686L 0.20 deleterious(0.02) benign(0.151) TCGA-C5-A1BI-01 X 68383010 68383010 C T PJA1 Silent p.R24R 0.11 TCGA-C5-A1BJ-01 10 119026278 119026278 C T SLC18A2 Silent p.L342L 0.08 TCGA-C5-A1BJ-01 10 124377810 124377810 C G DMBT1 Silent p.L1594L 0.09 TCGA-C5-A1BJ-01 10 16967746 16967746 C G CUBN Missense_Mutation p.R2100T 0.21 deleterious(0.04) probably_damaging(0.964) TCGA-C5-A1BJ-01 10 24909044 24909044 G A ARHGAP21 Nonsense_Mutation p.Q594* 0.22 TCGA-C5-A1BJ-01 10 29747500 29747500 G C SVIL Missense_Mutation p.Q2141E 0.09 deleterious(0.04) probably_damaging(0.956) TCGA-C5-A1BJ-01 10 81850650 81850650 C T TMEM254 Missense_Mutation p.R117W 0.13 deleterious(0) benign(0.074) TCGA-C5-A1BJ-01 10 99190814 99190814 C T PGAM1 Missense_Mutation p.P173S 0.14 deleterious(0.01) possibly_damaging(0.831) TCGA-C5-A1BJ-01 10 99510109 99510109 C T ZFYVE27 Missense_Mutation p.S229F 0.08 tolerated(0.79) probably_damaging(0.917) TCGA-C5-A1BJ-01 11 102563730 102563730 C T MMP27 Silent p.Q412Q 0.10 TCGA-C5-A1BJ-01 11 35308464 35308464 C G SLC1A2 Missense_Mutation p.E376Q 0.22 deleterious(0) probably_damaging(1) TCGA-C5-A1BJ-01 11 55595315 55595315 G C OR5L2 Missense_Mutation p.E207D 0.17 deleterious(0.02) benign(0.024) TCGA-C5-A1BJ-01 11 60161414 60161414 C A MS4A7 3'UTR 0.31 TCGA-C5-A1BJ-01 11 62368147 62368147 C T MTA2 Missense_Mutation p.E15K 0.08 deleterious(0) probably_damaging(0.992) TCGA-C5-A1BJ-01 11 63487394 63487394 G A RTN3 Missense_Mutation p.D474N 0.05 tolerated(0.06) benign(0.161) TCGA-C5-A1BJ-01 11 63488094 63488094 G C RTN3 Missense_Mutation p.G707A 0.07 tolerated(0.14) benign(0.013) TCGA-C5-A1BJ-01 11 64000216 64000216 C T DNAJC4 Missense_Mutation p.H136Y 0.12 deleterious(0) possibly_damaging(0.806) TCGA-C5-A1BJ-01 11 73429894 73429894 G CA RAB6A Frame_Shift_Ins p.R76Afs*2 0.09 TCGA-C5-A1BJ-01 11 95512840 95512840 G T FAM76B Missense_Mutation p.S208Y 0.06 tolerated(0.09) benign(0.283) TCGA-C5-A1BJ-01 12 100649877 100649877 G C DEPDC4 Missense_Mutation p.I276M 0.05 deleterious(0.01) possibly_damaging(0.477) TCGA-C5-A1BJ-01 12 109293228 109293228 C T DAO Missense_Mutation p.R297C 0.16 tolerated(0.2) benign(0.005) TCGA-C5-A1BJ-01 12 110989723 110989723 G C PPTC7 Missense_Mutation p.Q92E 0.09 tolerated(0.85) benign(0.004) TCGA-C5-A1BJ-01 12 125298775 125298775 G A SCARB1 Silent p.F201F 0.08 TCGA-C5-A1BJ-01 12 32975436 32975436 C G PKP2 Missense_Mutation p.G646R 0.16 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BJ-01 12 49434361 49434361 G C KMT2D Missense_Mutation p.L2398V 0.07 possibly_damaging(0.868) TCGA-C5-A1BJ-01 12 51675213 51675213 G A BIN2 3'UTR 0.16 TCGA-C5-A1BJ-01 12 52180553 52180553 G A SCN8A Silent p.K1390K 0.12 TCGA-C5-A1BJ-01 12 62974171 62974171 C T MON2 Missense_Mutation p.S1557L 0.04 deleterious(0) probably_damaging(0.996) TCGA-C5-A1BJ-01 12 6438466 6438466 A G TNFRSF1A 3'UTR 0.15 TCGA-C5-A1BJ-01 12 7301578 7301578 G A CLSTN3 Missense_Mutation p.E620K 0.21 deleterious(0.01) benign(0.042) TCGA-C5-A1BJ-01 13 96274674 96274674 C G DZIP1 Missense_Mutation p.D345H 0.15 deleterious(0) probably_damaging(1) TCGA-C5-A1BJ-01 14 23857021 23857021 C G MYH6 Missense_Mutation p.E1491Q 0.07 deleterious(0.01) probably_damaging(1) TCGA-C5-A1BJ-01 14 23871733 23871733 C T MYH6 Missense_Mutation p.G361R 0.20 deleterious(0) probably_damaging(0.935) TCGA-C5-A1BJ-01 14 24801114 24801114 G A ADCY4 Silent p.C183C 0.10 TCGA-C5-A1BJ-01 14 33290861 33290861 C G AKAP6 Missense_Mutation p.S1281C 0.24 deleterious(0.04) benign(0.013) TCGA-C5-A1BJ-01 14 69256314 69256314 G A ZFP36L1 Missense_Mutation p.S318F 0.08 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BJ-01 14 69256775 69256775 G A ZFP36L1 Silent p.I164I 0.11 TCGA-C5-A1BJ-01 15 25213164 25213164 G A SNURF Missense_Mutation p.E66K 0.11 tolerated_low_confidence(0.1) benign(0.017) TCGA-C5-A1BJ-01 15 82512459 82512459 C T EFTUD1 Silent p.G468G 0.18 TCGA-C5-A1BJ-01 15 84683325 84683325 G A ADAMTSL3 Silent p.K1335K 0.07 TCGA-C5-A1BJ-01 15 86076934 86076934 C G AKAP13 Missense_Mutation p.Q101E 0.17 tolerated(0.05) probably_damaging(0.979) TCGA-C5-A1BJ-01 15 90904047 90904047 C T ZNF774 Silent p.F328F 0.06 TCGA-C5-A1BJ-01 15 90904058 90904058 C T ZNF774 Missense_Mutation p.S332F 0.05 deleterious(0.02) probably_damaging(0.942) TCGA-C5-A1BJ-01 15 90904571 90904571 C T ZNF774 3'UTR 0.07 TCGA-C5-A1BJ-01 16 18840660 18840660 G T SMG1 Missense_Mutation p.S3184Y 0.20 deleterious(0.04) benign(0.355) TCGA-C5-A1BJ-01 16 2487156 2487156 G C CCNF Missense_Mutation p.E125Q 0.08 deleterious(0.02) possibly_damaging(0.76) TCGA-C5-A1BJ-01 16 28920082 28920082 C T RABEP2 Missense_Mutation p.E365K 0.07 tolerated(0.16) benign(0.286) TCGA-C5-A1BJ-01 16 31282368 31282368 C G ITGAM Nonsense_Mutation p.S174* 0.11 TCGA-C5-A1BJ-01 16 3274470 3274470 G A ZNF200 Nonsense_Mutation p.R204* 0.17 TCGA-C5-A1BJ-01 16 338032 338032 C T AXIN1 3'UTR 0.06 TCGA-C5-A1BJ-01 16 3900422 3900422 G A CREBBP Missense_Mutation p.P225L 0.18 possibly_damaging(0.777) TCGA-C5-A1BJ-01 16 81892744 81892744 C G PLCG2 Missense_Mutation p.S152C 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-C5-A1BJ-01 16 85143960 85143960 G A FAM92B Missense_Mutation p.R43W 0.19 deleterious(0) probably_damaging(1) TCGA-C5-A1BJ-01 17 35804837 35804837 G C TADA2A Missense_Mutation p.D191H 0.07 deleterious(0.02) possibly_damaging(0.778) TCGA-C5-A1BJ-01 17 37566919 37566919 G A MED1 Nonsense_Mutation p.Q519* 0.22 TCGA-C5-A1BJ-01 17 37618749 37618749 C T CDK12 Missense_Mutation p.S142L 0.08 unknown(0) TCGA-C5-A1BJ-01 17 39280341 39280341 C G KRTAP4-12 Missense_Mutation p.D12H 0.14 deleterious(0.01) unknown(0) TCGA-C5-A1BJ-01 17 42253983 42253983 C T ASB16 Intron 0.27 TCGA-C5-A1BJ-01 17 46239875 46239875 C T SKAP1 Missense_Mutation p.E312K 0.10 deleterious(0) probably_damaging(1) TCGA-C5-A1BJ-01 17 72285782 72285782 G A DNAI2 Missense_Mutation p.D173N 0.06 tolerated(0.05) benign(0.048) TCGA-C5-A1BJ-01 17 7318956 7318956 C G NLGN2 Silent p.L388L 0.13 TCGA-C5-A1BJ-01 17 8109913 8109913 C T AURKB Silent p.K194K 0.10 TCGA-C5-A1BJ-01 18 13114219 13114219 G C CEP192 Missense_Mutation p.A2420P 0.22 deleterious(0.03) benign(0.178) TCGA-C5-A1BJ-01 18 30350010 30350010 G A KLHL14 Missense_Mutation p.S182L 0.20 deleterious(0) possibly_damaging(0.537) TCGA-C5-A1BJ-01 18 5291996 5291996 C G ZBTB14 Missense_Mutation p.D71H 0.06 deleterious(0.04) probably_damaging(0.989) TCGA-C5-A1BJ-01 19 10116602 10116602 G C COL5A3 Missense_Mutation p.Q103E 0.04 unknown(0) TCGA-C5-A1BJ-01 19 10478851 10478851 C T TYK2 Missense_Mutation p.M115I 0.18 tolerated(0.06) benign(0.15) TCGA-C5-A1BJ-01 19 14627775 14627775 G T DNAJB1 Missense_Mutation p.H99N 0.05 tolerated(0.14) benign(0.049) TCGA-C5-A1BJ-01 19 14627804 14627804 G C DNAJB1 Missense_Mutation p.S89C 0.07 deleterious(0.01) possibly_damaging(0.765) TCGA-C5-A1BJ-01 19 15132520 15132520 C G CCDC105 Missense_Mutation p.I378M 0.16 deleterious(0.04) possibly_damaging(0.646) TCGA-C5-A1BJ-01 19 36633599 36633599 G C CAPNS1 Missense_Mutation p.E97Q 0.03 tolerated(0.07) probably_damaging(0.96) TCGA-C5-A1BJ-01 19 4430573 4430573 G A CHAF1A Missense_Mutation p.E628K 0.18 deleterious(0.01) probably_damaging(0.95) TCGA-C5-A1BJ-01 19 48543956 48543956 G C CABP5 Missense_Mutation p.I48M 0.05 deleterious(0.01) possibly_damaging(0.581) TCGA-C5-A1BJ-01 19 50093638 50093638 C G PRRG2 Missense_Mutation p.P201A 0.40 tolerated_low_confidence(0.05) benign(0.358) TCGA-C5-A1BJ-01 19 53057628 53057628 G C ZNF808 Missense_Mutation p.E487Q 0.19 deleterious(0.04) possibly_damaging(0.845) TCGA-C5-A1BJ-01 19 53612640 53612640 C G ZNF415 Missense_Mutation p.E220Q 0.04 tolerated(0.07) benign(0.084) TCGA-C5-A1BJ-01 19 7696640 7696640 G C PCP2 Missense_Mutation p.Q116E 0.12 tolerated_low_confidence(0.17) probably_damaging(0.977) TCGA-C5-A1BJ-01 1 10093678 10093678 C G UBE4B 5'UTR 0.05 TCGA-C5-A1BJ-01 1 12907428 12907428 C T HNRNPCL1 Missense_Mutation p.E239K 0.12 tolerated(0.17) possibly_damaging(0.828) TCGA-C5-A1BJ-01 1 144931678 144931678 C G PDE4DIP Intron 0.07 TCGA-C5-A1BJ-01 1 151298666 151298666 C T PI4KB 5'UTR 0.18 TCGA-C5-A1BJ-01 1 155450754 155450754 G C ASH1L Nonsense_Mutation p.S636* 0.04 TCGA-C5-A1BJ-01 1 155451111 155451111 G A ASH1L Missense_Mutation p.S517L 0.05 deleterious_low_confidence(0) benign(0.258) TCGA-C5-A1BJ-01 1 155451123 155451123 G A ASH1L Missense_Mutation p.S513F 0.07 tolerated_low_confidence(0.08) benign(0.032) TCGA-C5-A1BJ-01 1 158724897 158724897 G C OR6K6 Missense_Mutation p.E98Q 0.04 deleterious(0) probably_damaging(0.994) TCGA-C5-A1BJ-01 1 16259282 16259282 G A SPEN Missense_Mutation p.E2183K 0.04 possibly_damaging(0.524) TCGA-C5-A1BJ-01 1 182908672 182908672 G C SHCBP1L Missense_Mutation p.L263V 0.49 tolerated(0.06) benign(0.125) TCGA-C5-A1BJ-01 1 200571167 200571167 G C KIF14 Nonsense_Mutation p.S670* 0.07 TCGA-C5-A1BJ-01 1 203465362 203465362 G A OPTC Missense_Mutation p.E77K 0.06 tolerated(1) benign(0.006) TCGA-C5-A1BJ-01 1 205589548 205589548 G C ELK4 Nonsense_Mutation p.S209* 0.13 TCGA-C5-A1BJ-01 1 21934836 21934836 G A RAP1GAP Missense_Mutation p.T453M 0.27 deleterious(0.01) possibly_damaging(0.755) TCGA-C5-A1BJ-01 1 248685274 248685274 G A OR2G6 Silent p.S109S 0.07 TCGA-C5-A1BJ-01 1 40737653 40737653 G C ZMPSTE24 Missense_Mutation p.E239Q 0.06 deleterious(0.02) benign(0.183) TCGA-C5-A1BJ-01 1 47748081 47748081 G C STIL Missense_Mutation p.S395C 0.16 deleterious(0) benign(0.442) TCGA-C5-A1BJ-01 1 51912653 51912653 G C EPS15 Missense_Mutation p.S259C 0.19 deleterious(0) possibly_damaging(0.873) TCGA-C5-A1BJ-01 20 2411091 2411091 G A TGM6 Splice_Site p.X560_splice 0.21 TCGA-C5-A1BJ-01 20 30064251 30064251 G A REM1 Translation_Start_Site p.M1? 0.16 deleterious(0) possibly_damaging(0.901) TCGA-C5-A1BJ-01 20 37062622 37062622 G A SNORA71D RNA 0.22 TCGA-C5-A1BJ-01 20 43034754 43034754 G A HNF4A Missense_Mutation p.A58T 0.16 tolerated(0.48) benign(0.006) TCGA-C5-A1BJ-01 20 47592587 47592587 T C ARFGEF2 Silent p.D603D 0.20 TCGA-C5-A1BJ-01 20 48252850 48252850 C G B4GALT5 Nonstop_Mutation p.*389Sext*39 0.24 TCGA-C5-A1BJ-01 22 25007114 25007114 C T GGT1 Silent p.L22L 0.27 TCGA-C5-A1BJ-01 22 25294203 25294203 G A SGSM1 Missense_Mutation p.E818K 0.24 tolerated(0.23) benign(0.006) TCGA-C5-A1BJ-01 22 31838014 31838014 G A EIF4ENIF1 Missense_Mutation p.S766L 0.23 deleterious(0.02) benign(0.041) TCGA-C5-A1BJ-01 22 45768062 45768062 C G SMC1B Missense_Mutation p.K723N 0.07 tolerated(0.06) benign(0.042) TCGA-C5-A1BJ-01 22 50657188 50657188 C T TUBGCP6 Missense_Mutation p.E1589K 0.21 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BJ-01 2 106694362 106694362 G A C2orf40 Missense_Mutation p.V143I 0.13 deleterious(0) possibly_damaging(0.608) TCGA-C5-A1BJ-01 2 112596020 112596020 C T ANAPC1 Missense_Mutation p.D704N 0.08 tolerated(0.29) possibly_damaging(0.907) TCGA-C5-A1BJ-01 2 112766024 112766024 C G MERTK Missense_Mutation p.F644L 0.10 deleterious(0) probably_damaging(0.913) TCGA-C5-A1BJ-01 2 121107168 121107168 C G INHBB Silent p.L314L 0.22 TCGA-C5-A1BJ-01 2 153515691 153515691 C T PRPF40A Missense_Mutation p.D808N 0.12 tolerated(0.07) unknown(0) TCGA-C5-A1BJ-01 2 158167780 158167780 C G GALNT5 Missense_Mutation p.Q915E 0.11 tolerated(0.3) benign(0.002) TCGA-C5-A1BJ-01 2 173429744 173429744 C G PDK1 Missense_Mutation p.H212D 0.05 deleterious(0.01) benign(0.159) TCGA-C5-A1BJ-01 2 179638218 179638218 A T TTN Missense_Mutation p.V2522D 0.18 TCGA-C5-A1BJ-01 2 191552003 191552003 G C NAB1 Silent p.L445L 0.17 TCGA-C5-A1BJ-01 2 209192951 209192951 C T PIKFYVE Silent p.F1222F 0.16 TCGA-C5-A1BJ-01 2 215876718 215876718 G A ABCA12 Missense_Mutation p.P700S 0.22 tolerated(0.8) benign(0) TCGA-C5-A1BJ-01 2 227919323 227919323 C A COL4A4 Silent p.L949L 0.15 TCGA-C5-A1BJ-01 2 232325126 232325126 T C NCL Intron 0.20 TCGA-C5-A1BJ-01 2 232952241 232952241 T C DIS3L2 Silent p.Y137Y 0.12 TCGA-C5-A1BJ-01 2 241418961 241418961 T C ANKMY1 3'UTR 0.18 TCGA-C5-A1BJ-01 2 27892132 27892132 C G SLC4A1AP Nonsense_Mutation p.S408* 0.20 TCGA-C5-A1BJ-01 2 43919764 43919764 G A PLEKHH2 Missense_Mutation p.D100N 0.07 deleterious(0.03) benign(0.347) TCGA-C5-A1BJ-01 2 55561412 55561412 C G CCDC88A Missense_Mutation p.D849H 0.10 deleterious(0) probably_damaging(1) TCGA-C5-A1BJ-01 2 55561454 55561454 C T CCDC88A Missense_Mutation p.E835K 0.08 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BJ-01 2 63401965 63401965 G A WDPCP Missense_Mutation p.L640F 0.28 tolerated_low_confidence(0.09) benign(0.008) TCGA-C5-A1BJ-01 3 101399937 101399937 G C RPL24 3'UTR 0.06 TCGA-C5-A1BJ-01 3 123046604 123046604 C T ADCY5 Missense_Mutation p.R603H 0.15 deleterious(0.02) possibly_damaging(0.776) TCGA-C5-A1BJ-01 3 126707774 126707774 A G PLXNA1 Missense_Mutation p.N113S 0.14 tolerated(0.1) probably_damaging(0.998) TCGA-C5-A1BJ-01 3 128971139 128971139 G A COPG1 Missense_Mutation p.E36K 0.11 deleterious(0.03) possibly_damaging(0.612) TCGA-C5-A1BJ-01 3 151055522 151055522 C T P2RY12 3'UTR 0.25 TCGA-C5-A1BJ-01 3 170198523 170198523 C G SLC7A14 Missense_Mutation p.M516I 0.11 tolerated(0.28) benign(0.001) TCGA-C5-A1BJ-01 3 193272576 193272576 C G ATP13A4 Missense_Mutation p.E5Q 0.06 tolerated(0.2) benign(0.001) TCGA-C5-A1BJ-01 3 194080433 194080433 G A LRRC15 Missense_Mutation p.T453M 0.34 tolerated(0.06) possibly_damaging(0.492) TCGA-C5-A1BJ-01 3 40192620 40192620 G A MYRIP Silent p.L138L 0.12 TCGA-C5-A1BJ-01 3 49939970 49939970 G C MST1R Missense_Mutation p.P358R 0.04 tolerated(0.47) benign(0.05) TCGA-C5-A1BJ-01 3 50380833 50380833 C G ZMYND10 Missense_Mutation p.D139H 0.08 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BJ-01 3 52003448 52003448 G A ABHD14B Silent p.L209L 0.17 TCGA-C5-A1BJ-01 3 52003650 52003650 G C ABHD14B Intron 0.16 TCGA-C5-A1BJ-01 3 52003871 52003871 G A ABHD14B Intron 0.16 TCGA-C5-A1BJ-01 3 65342183 65342183 C G MAGI1 Missense_Mutation p.R1420T 0.12 tolerated_low_confidence(0.21) unknown(0) TCGA-C5-A1BJ-01 4 57180239 57180239 C T KIAA1211 Missense_Mutation p.R191W 0.19 deleterious(0) probably_damaging(0.933) TCGA-C5-A1BJ-01 4 57182677 57182677 G A KIAA1211 Silent p.P1003P 0.13 TCGA-C5-A1BJ-01 4 7056573 7056573 C G TADA2B Nonsense_Mutation p.S352* 0.21 TCGA-C5-A1BJ-01 5 140221089 140221089 G A PCDHA8 Silent p.P61P 0.15 TCGA-C5-A1BJ-01 5 14711180 14711180 C G ANKH 3'UTR 0.10 TCGA-C5-A1BJ-01 5 177547344 177547344 C G N4BP3 Missense_Mutation p.Q166E 0.42 tolerated(1) benign(0.002) TCGA-C5-A1BJ-01 5 177641849 177641849 C G PHYKPL Missense_Mutation p.D374H 0.24 deleterious(0) possibly_damaging(0.894) TCGA-C5-A1BJ-01 5 2749029 2749029 C T IRX2 Missense_Mutation p.D265N 0.18 tolerated(0.2) possibly_damaging(0.494) TCGA-C5-A1BJ-01 6 11213696 11213696 G A NEDD9 Nonsense_Mutation p.Q93* 0.05 TCGA-C5-A1BJ-01 6 161512528 161512528 T C MAP3K4 Missense_Mutation p.Y1031H 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-C5-A1BJ-01 6 26124025 26124025 C G HIST1H2BC Missense_Mutation p.E36D 0.07 deleterious_low_confidence(0.02) benign(0.022) TCGA-C5-A1BJ-01 6 28269414 28269414 G C PGBD1 Missense_Mutation p.D595H 0.24 tolerated(0.15) benign(0.012) TCGA-C5-A1BJ-01 6 33141825 33141825 G A COL11A2 Missense_Mutation p.S745L 0.19 possibly_damaging(0.519) TCGA-C5-A1BJ-01 6 56499748 56499748 C T DST Missense_Mutation p.E527K 0.06 benign(0.291) TCGA-C5-A1BJ-01 6 56918108 56918108 G A KIAA1586 Missense_Mutation p.E271K 0.28 tolerated(0.21) probably_damaging(0.99) TCGA-C5-A1BJ-01 6 80749569 80749569 G C TTK Missense_Mutation p.D763H 0.30 tolerated(0.05) possibly_damaging(0.521) TCGA-C5-A1BJ-01 7 102878266 102878266 G C DPY19L2P2 RNA 0.24 TCGA-C5-A1BJ-01 7 108205264 108205264 C T THAP5 Missense_Mutation p.D187N 0.15 tolerated(0.4) benign(0.002) TCGA-C5-A1BJ-01 7 128414648 128414648 G A OPN1SW Silent p.S197S 0.08 TCGA-C5-A1BJ-01 7 144060156 144060156 G C ARHGEF5 Missense_Mutation p.E132Q 0.10 tolerated(0.1) benign(0.011) TCGA-C5-A1BJ-01 7 151856085 151856085 C T KMT2C Missense_Mutation p.E3845K 0.18 possibly_damaging(0.718) TCGA-C5-A1BJ-01 7 158445171 158445171 C T NCAPG2 Silent p.V916V 0.08 TCGA-C5-A1BJ-01 7 31792977 31792977 C A PDE1C 3'UTR 0.12 TCGA-C5-A1BJ-01 7 64438701 64438701 G C ZNF117 Silent p.L416L 0.07 TCGA-C5-A1BJ-01 7 813766 813766 G A HEATR2 Silent p.A671A 0.21 TCGA-C5-A1BJ-01 7 99655344 99655344 G C ZSCAN21 Missense_Mutation p.Q141H 0.04 tolerated(0.09) benign(0.007) TCGA-C5-A1BJ-01 7 99661470 99661470 G C ZSCAN21 Missense_Mutation p.E218Q 0.06 tolerated(0.33) benign(0.004) TCGA-C5-A1BJ-01 8 10755476 10755476 C G XKR6 Missense_Mutation p.E638Q 0.06 deleterious(0) unknown(0) TCGA-C5-A1BJ-01 8 128429025 128429025 C T POU5F1B Missense_Mutation p.S305L 0.29 deleterious(0) benign(0.075) TCGA-C5-A1BJ-01 8 134030178 134030178 G C TG Missense_Mutation p.E2240Q 0.12 tolerated(0.11) benign(0.043) TCGA-C5-A1BJ-01 8 22277260 22277260 G A SLC39A14 3'UTR 0.18 TCGA-C5-A1BJ-01 8 25325882 25325882 G C CDCA2 Missense_Mutation p.D230H 0.13 deleterious(0.01) possibly_damaging(0.698) TCGA-C5-A1BJ-01 8 38124784 38124784 C T PPAPDC1B Splice_Site p.X155_splice 0.18 TCGA-C5-A1BJ-01 8 38250547 38250547 G A LETM2 Intron 0.13 TCGA-C5-A1BJ-01 8 40532227 40532227 C T ZMAT4 Silent p.L191L 0.18 TCGA-C5-A1BJ-01 8 93004062 93004062 G A RUNX1T1 Nonsense_Mutation p.R277* 0.16 TCGA-C5-A1BJ-01 9 113562808 113562808 C G MUSK Nonsense_Mutation p.S717* 0.06 TCGA-C5-A1BJ-01 9 125023709 125023709 C T RBM18 Silent p.L21L 0.09 TCGA-C5-A1BJ-01 9 130207191 130207191 C T ZNF79 Silent p.L404L 0.24 TCGA-C5-A1BJ-01 9 130550302 130550302 G C CDK9 Missense_Mutation p.L114F 0.03 deleterious(0.01) probably_damaging(1) TCGA-C5-A1BJ-01 9 131271285 131271285 C G GLE1 Nonsense_Mutation p.S77* 0.14 TCGA-C5-A1BJ-01 9 136523568 136523568 G A DBH Silent p.%3D 0.16 TCGA-C5-A1BJ-01 9 32419137 32419137 C G ACO1 Missense_Mutation p.L254V 0.13 tolerated(0.49) benign(0.017) TCGA-C5-A1BJ-01 9 86474190 86474190 C G KIF27 Missense_Mutation p.E1011Q 0.04 tolerated(0.28) possibly_damaging(0.856) TCGA-C5-A1BJ-01 X 119249758 119249758 G T RHOXF1 Silent p.L5L 0.11 TCGA-C5-A1BJ-01 X 119249759 119249759 A G RHOXF1 Missense_Mutation p.L5P 0.13 tolerated_low_confidence(0.15) benign(0.114) TCGA-C5-A1BJ-01 X 123554517 123554517 C G TENM1 Missense_Mutation p.E1542D 0.06 tolerated(0.05) possibly_damaging(0.508) TCGA-C5-A1BJ-01 X 154004501 154004501 C T DKC1 Missense_Mutation p.P460S 0.11 tolerated_low_confidence(0.11) benign(0.001) TCGA-C5-A1BJ-01 X 1719891 1719891 G C AKAP17A Missense_Mutation p.E498Q 0.19 tolerated_low_confidence(0.07) unknown(0) TCGA-C5-A1BJ-01 X 2609849 2609849 C T CD99 Intron 0.24 TCGA-C5-A1BJ-01 X 47101546 47101546 C T USP11 Silent p.F458F 0.19 TCGA-C5-A1BJ-01 X 47837064 47837064 C G ZNF182 Missense_Mutation p.G141A 0.14 tolerated(0.13) benign(0.074) TCGA-C5-A1BK-01 10 115986992 115986992 G C TDRD1 Missense_Mutation p.D1113H 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-C5-A1BK-01 10 15255945 15255945 G A FAM171A1 Missense_Mutation p.L548F 0.26 deleterious(0) probably_damaging(1) TCGA-C5-A1BK-01 10 16957870 16957870 G A CUBN Missense_Mutation p.S2387F 0.14 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BK-01 10 20466004 20466004 G T PLXDC2 Silent p.V320V 0.11 TCGA-C5-A1BK-01 10 44873765 44873765 G A CXCL12 Intron 0.09 TCGA-C5-A1BK-01 10 62632020 62632020 C T RHOBTB1 Nonsense_Mutation p.W615* 0.23 TCGA-C5-A1BK-01 10 95113616 95113616 C T MYOF Missense_Mutation p.V1145I 0.17 tolerated(1) benign(0.007) TCGA-C5-A1BK-01 10 98129927 98129927 C T TLL2 Silent p.R936R 0.20 TCGA-C5-A1BK-01 11 124789950 124789950 G C HEPACAM 3'UTR 0.22 TCGA-C5-A1BK-01 11 399985 399985 C T PKP3 Missense_Mutation p.S431L 0.23 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BK-01 11 57369616 57369616 C T SERPING1 Missense_Mutation p.S220L 0.17 deleterious(0) probably_damaging(0.956) TCGA-C5-A1BK-01 11 6417049 6417049 G A APBB1 Silent p.A642A 0.23 TCGA-C5-A1BK-01 11 66328096 66328096 G A CTSF 3'Flank 0.23 TCGA-C5-A1BK-01 11 66612502 66612502 G C RCE1 Missense_Mutation p.G205A 0.26 deleterious(0) probably_damaging(1) TCGA-C5-A1BK-01 11 67047341 67047341 G A ADRBK1 Missense_Mutation p.R158Q 0.07 tolerated(0.07) benign(0.046) TCGA-C5-A1BK-01 11 68455487 68455487 G T GAL Missense_Mutation p.V48F 0.28 deleterious(0) possibly_damaging(0.571) TCGA-C5-A1BK-01 11 69062821 69062821 C T MYEOV 5'UTR 0.27 TCGA-C5-A1BK-01 11 69062904 69062904 C T MYEOV Missense_Mutation p.S28F 0.23 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-C5-A1BK-01 11 703087 703087 C T TMEM80 Silent p.L148L 0.28 TCGA-C5-A1BK-01 12 100452656 100452656 G A UHRF1BP1L Missense_Mutation p.S800L 0.20 tolerated(0.14) benign(0.102) TCGA-C5-A1BK-01 12 100904813 100904813 C T NR1H4 Missense_Mutation p.R123C 0.26 deleterious(0) probably_damaging(0.981) TCGA-C5-A1BK-01 12 108012145 108012145 C G BTBD11 Missense_Mutation p.I814M 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A1BK-01 12 109530625 109530625 C T ALKBH2 5'UTR 0.04 TCGA-C5-A1BK-01 12 109539758 109539758 C T UNG Missense_Mutation p.H163Y 0.26 deleterious(0) probably_damaging(1) TCGA-C5-A1BK-01 12 117658014 117658014 C A NOS1 Nonsense_Mutation p.E1380* 0.11 TCGA-C5-A1BK-01 12 123494554 123494554 G A PITPNM2 Silent p.F162F 0.16 TCGA-C5-A1BK-01 12 27944650 27944650 C G KLHL42 Missense_Mutation p.F294L 0.27 deleterious(0.04) benign(0.148) TCGA-C5-A1BK-01 12 44149050 44149050 C A PUS7L 5'UTR 0.13 TCGA-C5-A1BK-01 12 51492613 51492613 G C TFCP2 Missense_Mutation p.I455M 0.25 deleterious(0) probably_damaging(0.973) TCGA-C5-A1BK-01 12 76740222 76740222 C T BBS10 Missense_Mutation p.D515N 0.03 tolerated(0.2) benign(0.003) TCGA-C5-A1BK-01 12 79747354 79747354 C A SYT1 Missense_Mutation p.L295M 0.24 tolerated(0.07) possibly_damaging(0.654) TCGA-C5-A1BK-01 13 102029363 102029363 G T NALCN Silent p.G140G 0.18 TCGA-C5-A1BK-01 13 108861152 108861152 G A LIG4 Missense_Mutation p.S822L 0.13 tolerated(0.7) benign(0.004) TCGA-C5-A1BK-01 13 26594155 26594155 G C ATP8A2 3'UTR 0.24 TCGA-C5-A1BK-01 13 26788558 26788558 G A RNF6 Silent p.I487I 0.22 TCGA-C5-A1BK-01 13 50587012 50587012 G T TRIM13 Missense_Mutation p.W315C 0.19 tolerated(0.18) possibly_damaging(0.62) TCGA-C5-A1BK-01 13 53239860 53239860 G C SUGT1 Missense_Mutation p.E203Q 0.25 deleterious(0.01) benign(0.219) TCGA-C5-A1BK-01 14 100728666 100728666 G C YY1 Missense_Mutation p.E235D 0.18 tolerated(0.15) benign(0.009) TCGA-C5-A1BK-01 14 20873630 20873630 C G TEP1 Missense_Mutation p.E284Q 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-C5-A1BK-01 14 21788328 21788328 C T RPGRIP1 Nonsense_Mutation p.Q487* 0.09 TCGA-C5-A1BK-01 14 52466482 52466482 C T C14orf166 Nonsense_Mutation p.Q144* 0.26 TCGA-C5-A1BK-01 14 55203957 55203957 C G SAMD4A Missense_Mutation p.Q311E 0.25 tolerated(0.2) benign(0.05) TCGA-C5-A1BK-01 14 60945022 60945022 C G C14orf39 Missense_Mutation p.D107H 0.15 deleterious(0) probably_damaging(0.979) TCGA-C5-A1BK-01 14 74398382 74398382 T C ZNF410 3'UTR 0.20 TCGA-C5-A1BK-01 14 76447123 76447123 C G TGFB3 Missense_Mutation p.K38N 0.11 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BK-01 14 88904624 88904624 C G SPATA7 Nonsense_Mutation p.S553* 0.06 TCGA-C5-A1BK-01 14 90870837 90870837 G A CALM1 Missense_Mutation p.D134N 0.20 deleterious_low_confidence(0.03) benign(0.193) TCGA-C5-A1BK-01 15 25492381 25492381 G T SNORD115-40 3'Flank 0.13 TCGA-C5-A1BK-01 15 63882965 63882965 G A USP3 Silent p.A501A 0.20 TCGA-C5-A1BK-01 15 65621255 65621255 C T IGDCC3 Missense_Mutation p.E813K 0.21 tolerated_low_confidence(0.84) unknown(0) TCGA-C5-A1BK-01 15 74963937 74963937 G C EDC3 Missense_Mutation p.Q115E 0.26 tolerated(0.56) benign(0.093) TCGA-C5-A1BK-01 16 18542930 18542930 C T NOMO2 Splice_Site p.X466_splice 0.12 TCGA-C5-A1BK-01 16 2014490 2014490 C G RPS2 Missense_Mutation p.R46P 0.25 tolerated(0.23) unknown(0) TCGA-C5-A1BK-01 16 20857632 20857632 C G AC004381.6 Silent p.L738L 0.27 TCGA-C5-A1BK-01 16 2158464 2158464 G A PKD1 Missense_Mutation p.S2235L 0.17 probably_damaging(0.951) TCGA-C5-A1BK-01 16 24902257 24902257 G C SLC5A11 Silent p.R244R 0.16 TCGA-C5-A1BK-01 16 30764777 30764777 G A PHKG2 Missense_Mutation p.R152Q 0.27 deleterious(0.01) benign(0.125) TCGA-C5-A1BK-01 16 31141434 31141434 G C KAT8 Missense_Mutation p.E290Q 0.16 deleterious(0) possibly_damaging(0.897) TCGA-C5-A1BK-01 16 46746648 46746648 G A MYLK3 Missense_Mutation p.P676S 0.29 deleterious(0) probably_damaging(0.991) TCGA-C5-A1BK-01 16 4836063 4836063 G C SEPT12 Missense_Mutation p.F70L 0.29 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BK-01 16 50667159 50667159 C T NKD1 Nonsense_Mutation p.R294* 0.14 TCGA-C5-A1BK-01 16 58752559 58752559 G C GOT2 Missense_Mutation p.L157V 0.18 tolerated(0.25) benign(0.017) TCGA-C5-A1BK-01 17 38645133 38645133 G A TNS4 Silent p.F176F 0.22 TCGA-C5-A1BK-01 17 39394399 39394399 C G KRTAP9-8 Missense_Mutation p.C32W 0.11 deleterious(0) unknown(0) TCGA-C5-A1BK-01 17 40947491 40947491 C G WNK4 Missense_Mutation p.P992A 0.18 tolerated(0.17) possibly_damaging(0.626) TCGA-C5-A1BK-01 17 42475272 42475272 G A GPATCH8 Silent p.I1391I 0.17 TCGA-C5-A1BK-01 17 43214086 43214086 G A ACBD4 Missense_Mutation p.M79I 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-C5-A1BK-01 17 465783 465783 G A VPS53 Nonsense_Mutation p.R506* 0.22 TCGA-C5-A1BK-01 17 65134104 65134104 C G HELZ Missense_Mutation p.E966Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BK-01 17 76497914 76497914 G A DNAH17 Silent p.N1733N 0.16 TCGA-C5-A1BK-01 17 76501416 76501416 C T DNAH17 Missense_Mutation p.E1635K 0.13 probably_damaging(0.921) TCGA-C5-A1BK-01 17 7948588 7948588 C G ALOX15B Missense_Mutation p.I294M 0.22 deleterious(0.02) probably_damaging(0.954) TCGA-C5-A1BK-01 17 8395749 8395749 C G MYH10 Missense_Mutation p.E1513Q 0.22 possibly_damaging(0.665) TCGA-C5-A1BK-01 18 2577797 2577797 G C NDC80 Missense_Mutation p.E78Q 0.27 deleterious(0) possibly_damaging(0.766) TCGA-C5-A1BK-01 18 2579017 2579017 G C NDC80 Missense_Mutation p.D190H 0.17 deleterious(0) probably_damaging(0.94) TCGA-C5-A1BK-01 18 67993286 67993286 C A SOCS6 Nonsense_Mutation p.S461* 0.25 TCGA-C5-A1BK-01 19 10467307 10467307 C T TYK2 Missense_Mutation p.E852K 0.10 deleterious(0.04) benign(0.371) TCGA-C5-A1BK-01 19 10572231 10572231 G A PDE4A Missense_Mutation p.E499K 0.37 deleterious(0.04) probably_damaging(0.99) TCGA-C5-A1BK-01 19 11557090 11557090 C A PRKCSH Silent p.V229V 0.16 TCGA-C5-A1BK-01 19 12781580 12781580 G A WDR83 Missense_Mutation p.E151K 0.34 deleterious(0.01) possibly_damaging(0.799) TCGA-C5-A1BK-01 19 1360225 1360225 C T MUM1 Missense_Mutation p.S103L 0.19 tolerated(0.07) benign(0.001) TCGA-C5-A1BK-01 19 1360624 1360624 C T MUM1 Missense_Mutation p.S236L 0.18 tolerated(0.16) benign(0.255) TCGA-C5-A1BK-01 19 16222538 16222538 C T RAB8A 5'UTR 0.25 TCGA-C5-A1BK-01 19 35836524 35836524 C G CD22 Missense_Mutation p.S743C 0.17 deleterious(0) probably_damaging(0.947) TCGA-C5-A1BK-01 19 36884445 36884445 C T ZFP82 Missense_Mutation p.R266Q 0.16 tolerated(0.32) benign(0.058) TCGA-C5-A1BK-01 19 37880895 37880895 G T ZNF527 3'UTR 0.12 TCGA-C5-A1BK-01 19 40890035 40890035 G A HIPK4 Silent p.F159F 0.21 TCGA-C5-A1BK-01 19 41522627 41522627 C T CYP2B6 Silent p.F457F 0.32 TCGA-C5-A1BK-01 19 41522753 41522753 C T CYP2B6 3'UTR 0.16 TCGA-C5-A1BK-01 19 42082621 42082621 G C CEACAM21 5'UTR 0.23 TCGA-C5-A1BK-01 19 4361723 4361723 G A SH3GL1 Silent p.F327F 0.26 TCGA-C5-A1BK-01 19 44302644 44302644 C G LYPD5 Missense_Mutation p.Q160H 0.18 deleterious(0.02) probably_damaging(0.987) TCGA-C5-A1BK-01 19 49004787 49004787 G C LMTK3 Missense_Mutation p.S305C 0.14 probably_damaging(0.992) TCGA-C5-A1BK-01 19 50204795 50204795 C T CPT1C Silent p.F199F 0.17 TCGA-C5-A1BK-01 19 53770125 53770125 A G VN1R4 Missense_Mutation p.L265S 0.06 deleterious(0.05) benign(0.288) TCGA-C5-A1BK-01 19 57293432 57293432 C T ZIM2 Missense_Mutation p.E179K 0.19 tolerated(0.89) benign(0.019) TCGA-C5-A1BK-01 19 5729891 5729891 T - CATSPERD Frame_Shift_Del p.F73Sfs*26 0.19 TCGA-C5-A1BK-01 19 57641688 57641688 C T USP29 Missense_Mutation p.L549F 0.22 tolerated(0.24) possibly_damaging(0.664) TCGA-C5-A1BK-01 19 648229 648229 C A RNF126 Missense_Mutation p.A279S 0.21 tolerated(0.31) probably_damaging(0.932) TCGA-C5-A1BK-01 19 6755149 6755149 G C SH2D3A Missense_Mutation p.S225C 0.16 deleterious(0.03) possibly_damaging(0.653) TCGA-C5-A1BK-01 1 10720517 10720517 C T CASZ1 Silent p.Q194Q 0.11 TCGA-C5-A1BK-01 1 145650536 145650536 C T RNF115 Missense_Mutation p.A72V 0.14 tolerated(0.09) benign(0.219) TCGA-C5-A1BK-01 1 150241157 150241157 G A APH1A Silent p.F18F 0.33 TCGA-C5-A1BK-01 1 151259572 151259572 C T ZNF687 Missense_Mutation p.H269Y 0.23 tolerated(0.48) possibly_damaging(0.521) TCGA-C5-A1BK-01 1 154527964 154527964 G A UBE2Q1 Silent p.L159L 0.16 TCGA-C5-A1BK-01 1 154943059 154943059 G C SHC1 5'UTR 0.13 TCGA-C5-A1BK-01 1 158064940 158064940 G A KIRREL 3'UTR 0.31 TCGA-C5-A1BK-01 1 159170740 159170740 C T CADM3 3'UTR 0.17 TCGA-C5-A1BK-01 1 1650895 1650895 C T CDK11A Splice_Site p.X76_splice 0.05 TCGA-C5-A1BK-01 1 18152849 18152849 C T ACTL8 Silent p.F312F 0.23 TCGA-C5-A1BK-01 1 192780879 192780879 G A RGS2 3'UTR 0.36 TCGA-C5-A1BK-01 1 201757712 201757712 G A NAV1 Missense_Mutation p.E1038K 0.17 deleterious(0) possibly_damaging(0.646) TCGA-C5-A1BK-01 1 211952327 211952327 C T LPGAT1 Missense_Mutation p.E263K 0.15 tolerated(1) benign(0.003) TCGA-C5-A1BK-01 1 228487084 228487084 C T OBSCN Silent p.L4445L 0.25 TCGA-C5-A1BK-01 1 228871718 228871718 G A RHOU Missense_Mutation p.E77K 0.21 tolerated(0.08) benign(0.011) TCGA-C5-A1BK-01 1 231472604 231472604 C T EXOC8 Silent p.A296A 0.18 TCGA-C5-A1BK-01 1 28555487 28555487 C G DNAJC8 Missense_Mutation p.Q42H 0.27 deleterious(0.02) benign(0.006) TCGA-C5-A1BK-01 1 34076831 34076831 C T CSMD2 Silent p.L2011L 0.23 TCGA-C5-A1BK-01 1 43782898 43782898 C A TIE1 Nonsense_Mutation p.S813* 0.08 TCGA-C5-A1BK-01 1 43783303 43783303 C A TIE1 Missense_Mutation p.H897N 0.20 deleterious(0) possibly_damaging(0.857) TCGA-C5-A1BK-01 1 45294175 45294175 C T PTCH2 Intron 0.32 TCGA-C5-A1BK-01 1 46651335 46651335 C G TSPAN1 3'UTR 0.21 TCGA-C5-A1BK-01 1 54497885 54497885 C T TMEM59 Missense_Mutation p.E304K 0.19 tolerated(0.24) benign(0.014) TCGA-C5-A1BK-01 1 59147737 59147737 C G MYSM1 Missense_Mutation p.D327H 0.19 tolerated(0.12) benign(0.002) TCGA-C5-A1BK-01 1 86196095 86196095 C T COL24A1 3'UTR 0.30 TCGA-C5-A1BK-01 1 93159886 93159886 C G EVI5 Silent p.L367L 0.21 TCGA-C5-A1BK-01 20 2688657 2688657 T C EBF4 Missense_Mutation p.I156T 0.50 deleterious(0.03) benign(0.035) TCGA-C5-A1BK-01 20 46265142 46265142 C G NCOA3 Missense_Mutation p.S671C 0.15 deleterious(0.02) probably_damaging(0.943) TCGA-C5-A1BK-01 20 47989992 47989992 G A KCNB1 Missense_Mutation p.A702V 0.19 tolerated_low_confidence(0.41) benign(0.137) TCGA-C5-A1BK-01 20 5294782 5294782 G A PROKR2 Silent p.L78L 0.17 TCGA-C5-A1BK-01 21 37741397 37741397 C T MORC3 Silent p.V577V 0.23 TCGA-C5-A1BK-01 21 37741838 37741838 C T MORC3 Silent p.I724I 0.16 TCGA-C5-A1BK-01 21 47337528 47337528 C A PCBP3 Silent p.A234A 0.12 TCGA-C5-A1BK-01 22 23237713 23237713 G A IGLL5 Missense_Mutation p.E162K 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.481) TCGA-C5-A1BK-01 22 25150111 25150111 C T PIWIL3 Missense_Mutation p.D283N 0.07 deleterious(0.04) probably_damaging(0.986) TCGA-C5-A1BK-01 22 29886525 29886525 G A NEFH Missense_Mutation p.E966K 0.08 tolerated_low_confidence(0.12) unknown(0) TCGA-C5-A1BK-01 22 29886715 29886715 G A NEFH 3'UTR 0.08 TCGA-C5-A1BK-01 22 39917809 39917809 G A ATF4 Silent p.L86L 0.27 TCGA-C5-A1BK-01 2 102793102 102793102 G A IL1R1 Nonsense_Mutation p.W531* 0.17 TCGA-C5-A1BK-01 2 1680739 1680739 C T PXDN Missense_Mutation p.E270K 0.24 deleterious(0.04) probably_damaging(0.97) TCGA-C5-A1BK-01 2 174123523 174123523 G A MLTK Missense_Mutation p.E486K 0.19 deleterious(0.01) probably_damaging(0.939) TCGA-C5-A1BK-01 2 203421006 203421006 G A BMPR2 Missense_Mutation p.R873Q 0.28 deleterious(0.05) possibly_damaging(0.476) TCGA-C5-A1BK-01 2 218940282 218940282 G A RUFY4 Missense_Mutation p.G376E 0.21 tolerated(0.83) benign(0.005) TCGA-C5-A1BK-01 2 222307723 222307723 C T EPHA4 Missense_Mutation p.E634K 0.28 deleterious(0) probably_damaging(0.933) TCGA-C5-A1BK-01 2 27802554 27802554 G A C2orf16 Missense_Mutation p.D1039N 0.17 tolerated(0.78) benign(0.007) TCGA-C5-A1BK-01 2 28521339 28521339 G C BRE Missense_Mutation p.E357Q 0.22 tolerated(0.11) probably_damaging(0.998) TCGA-C5-A1BK-01 2 39088417 39088417 C T DHX57 Missense_Mutation p.E379K 0.19 tolerated(0.17) benign(0.167) TCGA-C5-A1BK-01 2 39088645 39088645 C T DHX57 Missense_Mutation p.E303K 0.17 tolerated(0.27) benign(0.012) TCGA-C5-A1BK-01 3 110837547 110837547 G A PVRL3 Missense_Mutation p.D183N 0.07 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BK-01 3 12198411 12198411 G C TIMP4 Silent p.V87V 0.22 TCGA-C5-A1BK-01 3 122259323 122259323 C T PARP9 Silent p.S622S 0.13 TCGA-C5-A1BK-01 3 122399840 122399840 C T PARP14 Missense_Mutation p.S37L 0.15 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BK-01 3 122399904 122399904 C G PARP14 Missense_Mutation p.F58L 0.09 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BK-01 3 122598136 122598136 C T DIRC2 Missense_Mutation p.P450S 0.17 tolerated(0.1) benign(0.069) TCGA-C5-A1BK-01 3 129370446 129370446 G - TMCC1 Frame_Shift_Del p.L614Sfs*2 0.15 TCGA-C5-A1BK-01 3 138329658 138329658 C G FAIM 5'UTR 0.19 TCGA-C5-A1BK-01 3 183978917 183978917 G A CAMK2N2 Nonsense_Mutation p.R53* 0.19 TCGA-C5-A1BK-01 3 186793617 186793617 C T ST6GAL1 3'UTR 0.29 TCGA-C5-A1BK-01 3 25637933 25637933 G C RARB Missense_Mutation p.L391F 0.21 deleterious(0) probably_damaging(0.996) TCGA-C5-A1BK-01 3 47284477 47284477 C G KIF9 Intron 0.26 TCGA-C5-A1BK-01 3 49160436 49160436 C G LAMB2 Missense_Mutation p.G1425A 0.28 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BK-01 3 97655689 97655689 G A CRYBG3 Silent p.E866E 0.23 TCGA-C5-A1BK-01 4 10083053 10083053 C A WDR1 Silent p.V404V 0.24 TCGA-C5-A1BK-01 4 113510819 113510819 C G C4orf21 Intron 0.08 TCGA-C5-A1BK-01 4 120169975 120169975 G A USP53 Missense_Mutation p.E104K 0.18 tolerated(0.22) probably_damaging(1) TCGA-C5-A1BK-01 4 141555331 141555331 G C TBC1D9 Silent p.L839L 0.21 TCGA-C5-A1BK-01 4 153690664 153690664 G A TIGD4 Missense_Mutation p.S498F 0.16 deleterious(0.02) possibly_damaging(0.665) TCGA-C5-A1BK-01 4 166235222 166235222 G C KLHL2 Missense_Mutation p.D509H 0.23 deleterious(0) probably_damaging(0.967) TCGA-C5-A1BK-01 4 73205317 73205317 C G ADAMTS3 Missense_Mutation p.G252A 0.18 tolerated(0.65) benign(0.009) TCGA-C5-A1BK-01 4 95444929 95444929 C G PDLIM5 Missense_Mutation p.L51V 0.21 tolerated(0.57) benign(0.405) TCGA-C5-A1BK-01 5 128887582 128887582 G A ADAMTS19 Missense_Mutation p.E446K 0.17 tolerated(0.3) probably_damaging(1) TCGA-C5-A1BK-01 5 13900383 13900383 C T DNAH5 Missense_Mutation p.V731I 0.15 benign(0.299) TCGA-C5-A1BK-01 5 140236854 140236854 G A PCDHA10 Silent p.V407V 0.14 TCGA-C5-A1BK-01 5 140475758 140475758 G A PCDHB2 Missense_Mutation p.V462I 0.14 tolerated_low_confidence(0.15) benign(0.081) TCGA-C5-A1BK-01 5 140605248 140605248 G A PCDHB14 Missense_Mutation p.R724H 0.16 tolerated_low_confidence(0.12) benign(0.439) TCGA-C5-A1BK-01 5 149453030 149453030 C G CSF1R Missense_Mutation p.E306Q 0.21 tolerated(0.43) benign(0.067) TCGA-C5-A1BK-01 5 149755767 149755767 G A TCOF1 Silent p.A672A 0.27 TCGA-C5-A1BK-01 5 154272068 154272068 C T GEMIN5 Silent p.L1213L 0.31 TCGA-C5-A1BK-01 5 154393426 154393426 G A KIF4B Missense_Mutation p.E3K 0.10 deleterious(0.02) probably_damaging(0.947) TCGA-C5-A1BK-01 5 176314515 176314515 G A HK3 Nonsense_Mutation p.R513* 0.18 TCGA-C5-A1BK-01 5 35700753 35700753 C T SPEF2 Missense_Mutation p.A766V 0.14 tolerated(0.15) benign(0) TCGA-C5-A1BK-01 5 96498868 96498868 C T RIOK2 Missense_Mutation p.R519H 0.08 deleterious(0.03) benign(0.032) TCGA-C5-A1BK-01 6 100368918 100368918 G A MCHR2 Silent p.I307I 0.14 TCGA-C5-A1BK-01 6 131908764 131908764 G A MED23 3'UTR 0.26 TCGA-C5-A1BK-01 6 160638427 160638427 C G SLC22A2 3'UTR 0.23 TCGA-C5-A1BK-01 6 31584715 31584715 C T AIF1 3'UTR 0.44 TCGA-C5-A1BK-01 6 33258518 33258518 G A PFDN6 Missense_Mutation p.D96N 0.22 tolerated(0.21) benign(0.378) TCGA-C5-A1BK-01 6 41036673 41036673 G A OARD1 Missense_Mutation p.S88L 0.14 tolerated(0.64) benign(0.422) TCGA-C5-A1BK-01 6 41160155 41160155 T G TREML2 3'UTR 0.24 TCGA-C5-A1BK-01 6 43483678 43483678 G C YIPF3 Missense_Mutation p.F79L 0.21 tolerated(0.13) benign(0.078) TCGA-C5-A1BK-01 6 44218333 44218333 C T HSP90AB1 Silent p.V318V 0.19 TCGA-C5-A1BK-01 6 46828610 46828610 G C GPR116 Missense_Mutation p.Q741E 0.20 tolerated(0.67) benign(0.334) TCGA-C5-A1BK-01 6 53156762 53156762 C G ELOVL5 Splice_Site p.X20_splice 0.26 TCGA-C5-A1BK-01 6 73904187 73904187 G A KCNQ5 Missense_Mutation p.E636K 0.21 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BK-01 7 100675170 100675170 C T MUC17 Missense_Mutation p.S158L 0.22 benign(0) TCGA-C5-A1BK-01 7 100675897 100675897 C T MUC17 Silent p.V400V 0.20 TCGA-C5-A1BK-01 7 103030907 103030907 G C SLC26A5 Missense_Mutation p.A427G 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-C5-A1BK-01 7 104753145 104753145 C T KMT2E Nonsense_Mutation p.Q1648* 0.24 TCGA-C5-A1BK-01 7 137294339 137294339 G C DGKI Nonsense_Mutation p.S337* 0.10 TCGA-C5-A1BK-01 7 140273623 140273623 C T DENND2A Silent p.K477K 0.19 TCGA-C5-A1BK-01 7 156976679 156976679 G A UBE3C Missense_Mutation p.D367N 0.18 tolerated(0.08) benign(0.209) TCGA-C5-A1BK-01 7 73814818 73814818 C T CLIP2 Missense_Mutation p.A1000V 0.12 deleterious(0.02) possibly_damaging(0.703) TCGA-C5-A1BK-01 7 84651843 84651843 C T SEMA3D Silent p.V426V 0.20 TCGA-C5-A1BK-01 8 101273866 101273866 C T RNF19A Missense_Mutation p.R529Q 0.28 tolerated(0.2) possibly_damaging(0.905) TCGA-C5-A1BK-01 8 140743268 140743268 C T TRAPPC9 3'UTR 0.33 TCGA-C5-A1BK-01 8 41906386 41906386 G T KAT6A Missense_Mutation p.S37Y 0.17 probably_damaging(0.983) TCGA-C5-A1BK-01 8 63948246 63948246 C G GGH Missense_Mutation p.E65Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BK-01 8 66525572 66525572 C T ARMC1 Missense_Mutation p.M124I 0.24 tolerated(0.2) benign(0.015) TCGA-C5-A1BK-01 8 77763459 77763459 C T ZFHX4 Silent p.F1434F 0.28 TCGA-C5-A1BK-01 8 86127142 86127142 C T C8orf59 Intron 0.26 TCGA-C5-A1BK-01 8 90937101 90937101 G C OSGIN2 Missense_Mutation p.E331Q 0.24 tolerated(0.23) possibly_damaging(0.642) TCGA-C5-A1BK-01 9 112200443 112200443 G C PTPN3 Missense_Mutation p.Q180E 0.26 deleterious(0) probably_damaging(0.992) TCGA-C5-A1BK-01 9 123920337 123920337 G C CNTRL Missense_Mutation p.E1572Q 0.05 probably_damaging(0.999) TCGA-C5-A1BK-01 9 123952910 123952910 C G RAB14 Missense_Mutation p.G69A 0.18 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BK-01 9 130428485 130428485 G A STXBP1 Missense_Mutation p.R235Q 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A1BK-01 9 131151899 131151899 G A URM1 3'UTR 0.21 TCGA-C5-A1BK-01 9 43818172 43818172 G C CNTNAP3B Missense_Mutation p.Q353H 0.11 deleterious(0) possibly_damaging(0.832) TCGA-C5-A1BK-01 9 95155461 95155461 C T OGN Missense_Mutation p.D112N 0.18 tolerated(0.06) benign(0.142) TCGA-C5-A1BK-01 X 10106899 10106899 C T WWC3 Missense_Mutation p.R1003C 0.14 deleterious(0) probably_damaging(0.921) TCGA-C5-A1BK-01 X 107397094 107397094 C G ATG4A 3'UTR 0.48 TCGA-C5-A1BK-01 X 107683385 107683385 C T COL4A5 Silent p.A10A 0.11 TCGA-C5-A1BK-01 X 11157630 11157630 C T ARHGAP6 Missense_Mutation p.E760K 0.28 tolerated(0.08) possibly_damaging(0.574) TCGA-C5-A1BK-01 X 114245323 114245323 C T IL13RA2 Missense_Mutation p.C197Y 0.10 deleterious(0) probably_damaging(1) TCGA-C5-A1BK-01 X 12725747 12725747 G A FRMPD4 Missense_Mutation p.E483K 0.08 tolerated(0.14) probably_damaging(0.983) TCGA-C5-A1BK-01 X 140994898 140994898 C T MAGEC1 Nonsense_Mutation p.Q570* 0.35 TCGA-C5-A1BK-01 X 151896142 151896142 G A MAGEA12 3'Flank 0.29 TCGA-C5-A1BK-01 X 153282519 153282519 C T IRAK1 Splice_Site p.X304_splice 0.32 TCGA-C5-A1BK-01 X 153580315 153580315 C T FLNA Missense_Mutation p.E2282K 0.14 deleterious(0.04) possibly_damaging(0.734) TCGA-C5-A1BK-01 X 20033420 20033420 C A MAP7D2 Missense_Mutation p.R557L 0.21 tolerated(0.28) unknown(0) TCGA-C5-A1BK-01 X 3238287 3238287 C G MXRA5 Missense_Mutation p.Q1813H 0.35 deleterious(0.01) benign(0.05) TCGA-C5-A1BK-01 X 45013378 45013378 G A CXorf36 Silent p.V246V 0.18 TCGA-C5-A1BK-01 X 54022200 54022200 C T PHF8 Missense_Mutation p.E453K 0.19 tolerated(0.11) benign(0.36) TCGA-C5-A1BK-01 X 71495568 71495568 G A RPS4X Missense_Mutation p.R30C 0.27 tolerated(0.16) benign(0.218) TCGA-C5-A1BL-01 10 104375151 104375151 C G SUFU Silent p.L383L 0.13 TCGA-C5-A1BL-01 10 114190474 114190474 G C ZDHHC6 3'UTR 0.26 TCGA-C5-A1BL-01 10 17110148 17110148 C G CUBN Missense_Mutation p.E975Q 0.47 tolerated(0.57) benign(0.051) TCGA-C5-A1BL-01 10 33502550 33502550 C G NRP1 Missense_Mutation p.E460Q 0.09 tolerated(0.12) probably_damaging(0.999) TCGA-C5-A1BL-01 10 38242111 38242111 G C ZNF25 Silent p.L105L 0.18 TCGA-C5-A1BL-01 10 73500672 73500672 G A CDH23 Missense_Mutation p.E1533K 0.23 tolerated(0.25) probably_damaging(0.921) TCGA-C5-A1BL-01 10 73767018 73767018 C T CHST3 Missense_Mutation p.L77F 0.21 tolerated(0.2) probably_damaging(0.994) TCGA-C5-A1BL-01 10 77542685 77542685 C T C10orf11 5'UTR 0.52 TCGA-C5-A1BL-01 10 95109574 95109574 G T MYOF Missense_Mutation p.F1358L 0.05 tolerated(0.15) benign(0.015) TCGA-C5-A1BL-01 10 97135792 97135792 C G SORBS1 Missense_Mutation p.E559Q 0.18 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-C5-A1BL-01 11 12886424 12886424 C T TEAD1 Missense_Mutation p.R103C 0.23 deleterious(0) probably_damaging(0.995) TCGA-C5-A1BL-01 11 26681913 26681913 G A ANO3 Missense_Mutation p.M956I 0.29 tolerated(0.69) probably_damaging(0.968) TCGA-C5-A1BL-01 11 36511976 36511977 - A TRAF6 Frame_Shift_Ins p.S328Kfs*2 0.30 TCGA-C5-A1BL-01 11 50003766 50003766 G A OR4C12 Missense_Mutation p.S91F 0.14 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-C5-A1BL-01 11 59857928 59857928 C T MS4A2 Silent p.F102F 0.04 TCGA-C5-A1BL-01 11 610993 610993 G A PHRF1 Missense_Mutation p.E1572K 0.12 deleterious(0) possibly_damaging(0.801) TCGA-C5-A1BL-01 11 6423916 6423916 C T APBB1 Missense_Mutation p.E382K 0.19 deleterious(0) probably_damaging(0.994) TCGA-C5-A1BL-01 11 66188674 66188674 C T NPAS4 Silent p.A8A 0.14 TCGA-C5-A1BL-01 11 66240739 66240739 G A PELI3 Missense_Mutation p.D162N 0.33 deleterious(0) probably_damaging(0.996) TCGA-C5-A1BL-01 11 75277832 75277832 C T SERPINH1 Silent p.F146F 0.23 TCGA-C5-A1BL-01 11 8120384 8120384 A T TUB Missense_Mutation p.S415C 0.24 tolerated(0.11) benign(0.441) TCGA-C5-A1BL-01 11 83691596 83691598 CTC - DLG2 In_Frame_Del p.G336del 0.19 TCGA-C5-A1BL-01 11 86665891 86665891 C G FZD4 Silent p.L79L 0.21 TCGA-C5-A1BL-01 12 100787219 100787219 C T SLC17A8 Silent p.Y182Y 0.18 TCGA-C5-A1BL-01 12 104092950 104092950 G A STAB2 Missense_Mutation p.R1220H 0.21 deleterious(0) probably_damaging(1) TCGA-C5-A1BL-01 12 105558478 105558478 G A KIAA1033 Silent p.K1138K 0.23 TCGA-C5-A1BL-01 12 109834304 109834304 G A MYO1H Missense_Mutation p.E120K 0.10 deleterious(0.01) benign(0) TCGA-C5-A1BL-01 12 120765571 120765571 G T PLA2G1B 5'UTR 0.10 TCGA-C5-A1BL-01 12 130856118 130856118 T C PIWIL1 Missense_Mutation p.L854P 0.32 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BL-01 12 49943309 49943317 GCGCGACCT - KCNH3 In_Frame_Del p.L521_D523del 0.09 TCGA-C5-A1BL-01 12 49958304 49958304 C G MCRS1 Missense_Mutation p.E186Q 0.12 tolerated(0.47) benign(0.037) TCGA-C5-A1BL-01 12 49958552 49958552 C T MCRS1 Missense_Mutation p.D152N 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-C5-A1BL-01 12 50625463 50625463 C T LIMA1 Missense_Mutation p.M50I 0.12 tolerated(0.49) benign(0.011) TCGA-C5-A1BL-01 12 52775182 52775182 C T KRT84 Missense_Mutation p.R347H 0.28 deleterious(0.03) benign(0.155) TCGA-C5-A1BL-01 12 53566403 53566403 C G CSAD Silent p.L79L 0.31 TCGA-C5-A1BL-01 12 54109651 54109651 C T CALCOCO1 Missense_Mutation p.E396K 0.34 deleterious(0.04) probably_damaging(0.932) TCGA-C5-A1BL-01 12 56094855 56094855 G A ITGA7 Silent p.L166L 0.26 TCGA-C5-A1BL-01 12 56117755 56117755 G C RDH5 Missense_Mutation p.E219Q 0.08 tolerated(0.43) benign(0.017) TCGA-C5-A1BL-01 12 57648473 57648473 T C R3HDM2 3'UTR 0.24 TCGA-C5-A1BL-01 12 6752714 6752714 G A ACRBP Silent p.F356F 0.36 TCGA-C5-A1BL-01 12 94676114 94676114 C T PLXNC1 Silent p.I1272I 0.25 TCGA-C5-A1BL-01 12 97087524 97087524 C G C12orf55 Missense_Mutation p.Q2097E 0.12 tolerated(0.21) benign(0.001) TCGA-C5-A1BL-01 12 99059471 99059471 G A APAF1 Missense_Mutation p.E366K 0.18 deleterious(0) probably_damaging(1) TCGA-C5-A1BL-01 13 110829384 110829384 C T COL4A1 Missense_Mutation p.G906E 0.05 probably_damaging(1) TCGA-C5-A1BL-01 13 110839653 110839653 C T COL4A1 Silent p.L520L 0.19 TCGA-C5-A1BL-01 13 28866556 28866556 C T PAN3 Missense_Mutation p.S854F 0.14 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BL-01 13 41936244 41936244 G T NAA16 Missense_Mutation p.Q496H 0.11 deleterious(0.05) possibly_damaging(0.852) TCGA-C5-A1BL-01 13 76301162 76301162 C T RP11-29G8.3 Intron 0.11 TCGA-C5-A1BL-01 13 84455071 84455071 G T SLITRK1 Missense_Mutation p.T191K 0.25 tolerated(0.34) benign(0.09) TCGA-C5-A1BL-01 14 102498622 102498622 C G DYNC1H1 Missense_Mutation p.I3299M 0.06 probably_damaging(0.997) TCGA-C5-A1BL-01 14 20249054 20249054 C A OR4M1 Missense_Mutation p.N191K 0.19 deleterious(0) benign(0.201) TCGA-C5-A1BL-01 14 32142755 32142755 C T NUBPL Missense_Mutation p.S163L 0.05 deleterious(0) possibly_damaging(0.696) TCGA-C5-A1BL-01 14 35872941 35872941 C T NFKBIA Silent p.V97V 0.28 TCGA-C5-A1BL-01 14 37283178 37283178 G A SLC25A21 Missense_Mutation p.P50S 0.70 deleterious(0.03) probably_damaging(0.938) TCGA-C5-A1BL-01 14 88442767 88442767 G C GALC Silent p.L229L 0.10 TCGA-C5-A1BL-01 14 90755274 90755274 C T NRDE2 Silent p.L815L 0.06 TCGA-C5-A1BL-01 14 94089013 94089013 G A UNC79 Missense_Mutation p.E1635K 0.09 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-C5-A1BL-01 14 95688036 95688036 C G CLMN Missense_Mutation p.D106H 0.34 deleterious(0) probably_damaging(0.995) TCGA-C5-A1BL-01 15 102187096 102187096 C G TM2D3 Missense_Mutation p.D112H 0.13 deleterious(0.04) benign(0.227) TCGA-C5-A1BL-01 15 25227220 25227220 C A SNRPN 3'Flank 0.04 TCGA-C5-A1BL-01 15 25620710 25620710 C T UBE3A Missense_Mutation p.G91E 0.07 tolerated(1) benign(0.003) TCGA-C5-A1BL-01 15 37002110 37002110 G A C15orf41 Missense_Mutation p.E222K 0.29 tolerated(0.18) possibly_damaging(0.853) TCGA-C5-A1BL-01 15 40093815 40093815 C T GPR176 Missense_Mutation p.E356K 0.30 tolerated(0.34) benign(0.014) TCGA-C5-A1BL-01 15 70959889 70959889 C G UACA Missense_Mutation p.R1045T 0.18 tolerated(0.05) benign(0.038) TCGA-C5-A1BL-01 15 72120336 72120336 C T MYO9A Missense_Mutation p.E2358K 0.23 deleterious(0) probably_damaging(0.993) TCGA-C5-A1BL-01 15 91150675 91150675 G T CRTC3 Missense_Mutation p.G181V 0.04 deleterious(0.01) possibly_damaging(0.588) TCGA-C5-A1BL-01 16 15155747 15155747 C A RRN3 Nonsense_Mutation p.E604* 0.25 TCGA-C5-A1BL-01 16 22132909 22132909 C T VWA3A Nonsense_Mutation p.Q443* 0.19 TCGA-C5-A1BL-01 16 27504517 27504517 C T GTF3C1 Intron 0.14 TCGA-C5-A1BL-01 16 28884849 28884849 C A SH2B1 Missense_Mutation p.A660E 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.726) TCGA-C5-A1BL-01 16 29990769 29990769 G A TAOK2 Missense_Mutation p.E199K 0.08 deleterious(0) possibly_damaging(0.665) TCGA-C5-A1BL-01 16 3828740 3828740 C T CREBBP Silent p.K634K 0.32 TCGA-C5-A1BL-01 16 4432189 4432189 G A VASN Silent p.T437T 0.19 TCGA-C5-A1BL-01 16 48125046 48125046 G C ABCC12 Silent p.L1090L 0.19 TCGA-C5-A1BL-01 16 48130714 48130714 C T ABCC12 Silent p.L1046L 0.24 TCGA-C5-A1BL-01 16 58621282 58621282 C G CNOT1 Silent p.L115L 0.07 TCGA-C5-A1BL-01 16 64984722 64984722 G T CDH11 Silent p.G614G 0.28 TCGA-C5-A1BL-01 16 69874115 69874115 G A WWP2 Missense_Mutation p.G143R 0.27 deleterious(0.01) probably_damaging(0.929) TCGA-C5-A1BL-01 16 89805325 89805325 G A FANCA Missense_Mutation p.R1409W 0.27 deleterious(0.04) possibly_damaging(0.527) TCGA-C5-A1BL-01 17 1551691 1551691 G C RILP Silent p.L258L 0.35 TCGA-C5-A1BL-01 17 27061104 27061104 G A NEK8 Missense_Mutation p.E51K 0.33 deleterious(0) probably_damaging(1) TCGA-C5-A1BL-01 17 39777876 39777876 C T KRT17 Missense_Mutation p.R268H 0.10 deleterious(0.03) benign(0.219) TCGA-C5-A1BL-01 17 40714701 40714701 C G COASY Missense_Mutation p.R50G 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A1BL-01 17 42239301 42239301 G C C17orf53 3'UTR 0.20 TCGA-C5-A1BL-01 17 56382430 56382430 C T BZRAP1 Missense_Mutation p.E1846K 0.27 deleterious(0.01) benign(0.41) TCGA-C5-A1BL-01 17 61559097 61559097 C T ACE Silent p.F372F 0.69 TCGA-C5-A1BL-01 17 67136770 67136770 C G ABCA6 Missense_Mutation p.R25S 0.10 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BL-01 17 7695328 7695328 G T DNAH2 Nonsense_Mutation p.E2332* 0.31 TCGA-C5-A1BL-01 18 13731930 13731930 G A RNMT Silent p.Q138Q 0.04 TCGA-C5-A1BL-01 18 29056300 29056300 C G DSG3 3'UTR 0.40 TCGA-C5-A1BL-01 18 34855193 34855193 G A CELF4 Silent p.L154L 0.24 TCGA-C5-A1BL-01 18 43487976 43487976 G C EPG5 Missense_Mutation p.L1426V 0.05 tolerated(0.08) probably_damaging(0.953) TCGA-C5-A1BL-01 18 5891558 5891558 C T TMEM200C Missense_Mutation p.G169R 0.23 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BL-01 18 67992741 67992741 C T SOCS6 Silent p.I279I 0.21 TCGA-C5-A1BL-01 18 74620481 74620481 G A ZNF236 Missense_Mutation p.A833T 0.23 tolerated(0.65) benign(0.001) TCGA-C5-A1BL-01 19 14516740 14516740 G A CD97 Missense_Mutation p.E604K 0.38 tolerated(0.2) benign(0.119) TCGA-C5-A1BL-01 19 17025238 17025238 G A CPAMD8 Missense_Mutation p.S1333L 0.11 tolerated(0.16) benign(0.018) TCGA-C5-A1BL-01 19 17263479 17263479 G C MYO9B Missense_Mutation p.E321Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BL-01 19 18643524 18643524 G T FKBP8 Missense_Mutation p.L369M 0.37 deleterious(0.03) possibly_damaging(0.896) TCGA-C5-A1BL-01 19 22362882 22362882 G A ZNF676 Missense_Mutation p.S546L 0.17 deleterious(0.03) probably_damaging(0.977) TCGA-C5-A1BL-01 19 23544661 23544661 C T ZNF91 Missense_Mutation p.E374K 0.07 deleterious(0.03) benign(0.001) TCGA-C5-A1BL-01 19 23927435 23927435 C T ZNF681 Missense_Mutation p.R306K 0.08 deleterious(0.03) benign(0.067) TCGA-C5-A1BL-01 19 38126264 38126264 C T ZFP30 Missense_Mutation p.R393H 0.04 tolerated(0.73) probably_damaging(0.998) TCGA-C5-A1BL-01 19 42406084 42406084 C A ARHGEF1 Missense_Mutation p.H454N 0.07 tolerated(0.31) benign(0.313) TCGA-C5-A1BL-01 19 44740265 44740265 C G ZNF227 Nonsense_Mutation p.S561* 0.16 TCGA-C5-A1BL-01 19 52496664 52496664 G C ZNF615 Silent p.L566L 0.21 TCGA-C5-A1BL-01 19 54327207 54327207 G C NLRP12 Silent p.L74L 0.19 TCGA-C5-A1BL-01 19 54782202 54782202 G A LILRB2 Silent p.H390H 0.28 TCGA-C5-A1BL-01 19 58438632 58438632 C T ZNF418 Missense_Mutation p.R306Q 0.10 deleterious(0.03) possibly_damaging(0.88) TCGA-C5-A1BL-01 19 5867291 5867291 C A FUT5 Missense_Mutation p.S149I 0.06 deleterious(0) possibly_damaging(0.602) TCGA-C5-A1BL-01 19 9059312 9059312 C T MUC16 Silent p.S9378S 0.20 TCGA-C5-A1BL-01 19 9073717 9073717 C T MUC16 Missense_Mutation p.A4577T 0.15 unknown(0) TCGA-C5-A1BL-01 19 9453513 9453513 G C ZNF559 Missense_Mutation p.E462D 0.25 deleterious(0.04) benign(0.008) TCGA-C5-A1BL-01 1 109477412 109477412 C T CLCC1 Silent p.A512A 0.17 TCGA-C5-A1BL-01 1 109807624 109807624 G C CELSR2 Missense_Mutation p.E1867Q 0.09 tolerated(0.14) benign(0.408) TCGA-C5-A1BL-01 1 113658995 113658995 G A LRIG2 Missense_Mutation p.E873K 0.12 deleterious(0) possibly_damaging(0.78) TCGA-C5-A1BL-01 1 115218610 115218610 G A AMPD1 Missense_Mutation p.S501F 0.08 deleterious(0) possibly_damaging(0.701) TCGA-C5-A1BL-01 1 115267844 115267844 G C CSDE1 Nonsense_Mutation p.S630* 0.06 TCGA-C5-A1BL-01 1 149857978 149857978 G C HIST2H2BE Missense_Mutation p.F71L 0.07 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-C5-A1BL-01 1 150240405 150240405 G A APH1A Missense_Mutation p.S79F 0.17 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BL-01 1 155168227 155168227 G A THBS3 Missense_Mutation p.P683S 0.05 tolerated(0.16) benign(0.039) TCGA-C5-A1BL-01 1 157773666 157773666 C G FCRL1 Missense_Mutation p.L96F 0.15 tolerated(0.69) possibly_damaging(0.666) TCGA-C5-A1BL-01 1 157789795 157789795 A G FCRL1 Splice_Site p.X11_splice 0.13 TCGA-C5-A1BL-01 1 15793878 15793878 C T CELA2A Intron 0.15 TCGA-C5-A1BL-01 1 158639538 158639538 G A SPTA1 Silent p.D546D 0.47 TCGA-C5-A1BL-01 1 16256061 16256061 C G SPEN Nonsense_Mutation p.S1109* 0.09 TCGA-C5-A1BL-01 1 16534513 16534513 G C ARHGEF19 Missense_Mutation p.S207C 0.25 tolerated_low_confidence(0.12) possibly_damaging(0.503) TCGA-C5-A1BL-01 1 167757061 167757061 C T MPZL1 Missense_Mutation p.P238L 0.25 tolerated(0.07) probably_damaging(0.998) TCGA-C5-A1BL-01 1 170967418 170967418 G A MROH9 Intron 0.15 TCGA-C5-A1BL-01 1 172579345 172579345 C A SUCO Missense_Mutation p.N1237K 0.08 tolerated(0.11) probably_damaging(0.999) TCGA-C5-A1BL-01 1 179561978 179561978 G A TDRD5 Silent p.L76L 0.11 TCGA-C5-A1BL-01 1 180165521 180165521 C T QSOX1 Silent p.L531L 0.05 TCGA-C5-A1BL-01 1 19477144 19477144 G C UBR4 Missense_Mutation p.L2453V 0.09 benign(0.017) TCGA-C5-A1BL-01 1 197237592 197237592 C T CRB1 Missense_Mutation p.S17L 0.12 tolerated(0.81) benign(0.002) TCGA-C5-A1BL-01 1 200959075 200959075 C G KIF21B Missense_Mutation p.D1043H 0.05 tolerated(0.08) possibly_damaging(0.507) TCGA-C5-A1BL-01 1 207785320 207785320 A G CR1 Missense_Mutation p.H2170R 0.12 deleterious(0.04) benign(0.428) TCGA-C5-A1BL-01 1 22032632 22032632 G A USP48 Missense_Mutation p.R754W 0.15 deleterious(0) probably_damaging(0.965) TCGA-C5-A1BL-01 1 222801802 222801802 G A MIA3 Missense_Mutation p.D414N 0.20 tolerated(0.27) benign(0.212) TCGA-C5-A1BL-01 1 226127637 226127637 G A LEFTY2 Missense_Mutation p.R106W 0.24 deleterious(0.02) benign(0.094) TCGA-C5-A1BL-01 1 226578157 226578157 C G PARP1 Missense_Mutation p.D191H 0.12 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BL-01 1 228645863 228645863 C G HIST3H2BB Silent p.P11P 0.06 TCGA-C5-A1BL-01 1 231376777 231376777 G T C1orf131 Nonsense_Mutation p.Y37* 0.06 TCGA-C5-A1BL-01 1 232650310 232650310 G A SIPA1L2 Missense_Mutation p.S259L 0.21 tolerated(0.23) possibly_damaging(0.71) TCGA-C5-A1BL-01 1 236341882 236341882 C G GPR137B Missense_Mutation p.I211M 0.12 deleterious(0.04) benign(0.251) TCGA-C5-A1BL-01 1 236744565 236744565 C A HEATR1 Missense_Mutation p.Q904H 0.04 tolerated(0.06) possibly_damaging(0.67) TCGA-C5-A1BL-01 1 237774171 237774171 G A RYR2 Missense_Mutation p.R1598K 0.27 possibly_damaging(0.784) TCGA-C5-A1BL-01 1 24112168 24112168 C G PITHD1 Nonsense_Mutation p.Y108* 0.11 TCGA-C5-A1BL-01 1 24413279 24413279 C T MYOM3 Silent p.S551S 0.23 TCGA-C5-A1BL-01 1 245850144 245850144 G A KIF26B Missense_Mutation p.A1287T 0.17 tolerated(0.89) unknown(0) TCGA-C5-A1BL-01 1 2527477 2527477 C T MMEL1 Missense_Mutation p.E491K 0.06 tolerated(0.21) benign(0.021) TCGA-C5-A1BL-01 1 29652239 29652239 G A PTPRU 3'Flank 0.43 TCGA-C5-A1BL-01 1 36754981 36754981 C T THRAP3 Missense_Mutation p.S454F 0.22 deleterious(0) probably_damaging(0.989) TCGA-C5-A1BL-01 1 55317994 55317994 G A DHCR24 Missense_Mutation p.S488F 0.17 deleterious(0.01) possibly_damaging(0.62) TCGA-C5-A1BL-01 1 62739866 62739866 C T KANK4 Missense_Mutation p.E304K 0.09 deleterious(0.03) possibly_damaging(0.868) TCGA-C5-A1BL-01 1 66058453 66058453 C G LEPR Missense_Mutation p.A203G 0.19 deleterious(0.01) benign(0.15) TCGA-C5-A1BL-01 1 94047999 94047999 G A BCAR3 Silent p.F515F 0.24 TCGA-C5-A1BL-01 20 31673928 31673928 G C BPIFB4 Missense_Mutation p.C295S 0.17 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BL-01 20 35675483 35675483 G C RBL1 Silent p.L526L 0.06 TCGA-C5-A1BL-01 20 3578567 3578567 G C ATRN Missense_Mutation p.D1162H 0.07 deleterious(0) probably_damaging(0.968) TCGA-C5-A1BL-01 20 44879767 44879767 C T CDH22 Missense_Mutation p.G56E 0.21 tolerated(0.27) benign(0.157) TCGA-C5-A1BL-01 20 47621682 47621682 G C ARFGEF2 Missense_Mutation p.E1170Q 0.06 deleterious(0) probably_damaging(0.984) TCGA-C5-A1BL-01 21 35140019 35140019 G C ITSN1 Missense_Mutation p.R310T 0.07 tolerated(0.42) unknown(0) TCGA-C5-A1BL-01 21 35140099 35140099 G T ITSN1 Missense_Mutation p.D337Y 0.06 deleterious(0) unknown(0) TCGA-C5-A1BL-01 21 38593674 38593674 G A DSCR3 3'Flank 0.26 TCGA-C5-A1BL-01 22 30860844 30860844 C G SEC14L3 Silent p.L209L 0.22 TCGA-C5-A1BL-01 22 39477148 39477148 G A APOBEC3G Missense_Mutation p.D128N 0.08 tolerated(0.33) possibly_damaging(0.497) TCGA-C5-A1BL-01 22 42608264 42608264 C G TCF20 Missense_Mutation p.L1016F 0.26 probably_damaging(0.973) TCGA-C5-A1BL-01 2 128628868 128628868 G C AMMECR1L Nonsense_Mutation p.S158* 0.11 TCGA-C5-A1BL-01 2 145146936 145146936 A C ZEB2 3'UTR 0.24 TCGA-C5-A1BL-01 2 152695761 152695761 G A CACNB4 Nonsense_Mutation p.Q479* 0.36 TCGA-C5-A1BL-01 2 178096193 178096193 C G NFE2L2 Missense_Mutation p.E380Q 0.18 deleterious(0.01) possibly_damaging(0.873) TCGA-C5-A1BL-01 2 178097218 178097218 C A NFE2L2 Nonsense_Mutation p.E166* 0.16 TCGA-C5-A1BL-01 2 179433734 179433734 C T TTN Missense_Mutation p.D25709N 0.14 TCGA-C5-A1BL-01 2 179585223 179585223 C T TTN Missense_Mutation p.D7756N 0.40 TCGA-C5-A1BL-01 2 179616503 179616503 G A TTN Intron 0.10 TCGA-C5-A1BL-01 2 179641067 179641067 C T TTN Missense_Mutation p.D1842N 0.14 TCGA-C5-A1BL-01 2 215855600 215855600 A C ABCA12 Nonsense_Mutation p.Y1150* 0.41 TCGA-C5-A1BL-01 2 225662651 225662651 C G DOCK10 Missense_Mutation p.L1514F 0.14 deleterious(0) benign(0.138) TCGA-C5-A1BL-01 2 231624684 231624684 C T CAB39 5'UTR 0.20 TCGA-C5-A1BL-01 2 27565859 27565859 G A GTF3C2 Silent p.L135L 0.26 TCGA-C5-A1BL-01 2 27565900 27565900 G T GTF3C2 Nonsense_Mutation p.S121* 0.26 TCGA-C5-A1BL-01 2 32889467 32889467 G A TTC27 Silent p.E246E 0.25 TCGA-C5-A1BL-01 2 39552661 39552661 C G MAP4K3 Missense_Mutation p.E306Q 0.10 deleterious(0.03) possibly_damaging(0.529) TCGA-C5-A1BL-01 2 46603685 46603685 G A EPAS1 Missense_Mutation p.E348K 0.07 deleterious(0.04) probably_damaging(0.942) TCGA-C5-A1BL-01 2 58388716 58388716 C T FANCL Missense_Mutation p.D326N 0.25 tolerated(0.06) benign(0.16) TCGA-C5-A1BL-01 3 119886955 119886955 C G GPR156 Missense_Mutation p.E457Q 0.12 tolerated(0.6) benign(0.004) TCGA-C5-A1BL-01 3 122598259 122598259 G A DIRC2 3'UTR 0.24 TCGA-C5-A1BL-01 3 123634465 123634465 G A CCDC14 Missense_Mutation p.H634Y 0.19 tolerated(0.88) benign(0) TCGA-C5-A1BL-01 3 126737155 126737155 G T PLXNA1 Nonsense_Mutation p.E1227* 0.24 TCGA-C5-A1BL-01 3 150873999 150873999 C G MED12L Missense_Mutation p.S203C 0.22 tolerated(0.09) possibly_damaging(0.522) TCGA-C5-A1BL-01 3 153202446 153202446 C T C3orf79 Missense_Mutation p.S34L 0.12 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-C5-A1BL-01 3 156192551 156192551 G A KCNAB1 Silent p.Q200Q 0.17 TCGA-C5-A1BL-01 3 167508190 167508190 C G SERPINI1 Nonsense_Mutation p.S94* 0.14 TCGA-C5-A1BL-01 3 179294463 179294463 C T ACTL6A Silent p.L209L 0.11 TCGA-C5-A1BL-01 3 183963307 183963307 G T ALG3 Silent p.L131L 0.05 TCGA-C5-A1BL-01 3 4458918 4458918 G C SUMF1 Missense_Mutation p.P245R 0.28 deleterious(0) probably_damaging(1) TCGA-C5-A1BL-01 3 48423302 48423302 C T FBXW12 Silent p.F366F 0.28 TCGA-C5-A1BL-01 3 49898658 49898658 C G CAMKV Missense_Mutation p.E173Q 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A1BL-01 3 51969651 51969651 C T RRP9 Missense_Mutation p.V265M 0.13 deleterious(0) probably_damaging(0.995) TCGA-C5-A1BL-01 3 62263226 62263226 G A PTPRG Missense_Mutation p.G1213S 0.41 deleterious(0) probably_damaging(1) TCGA-C5-A1BL-01 3 88040735 88040735 G A HTR1F Missense_Mutation p.R279K 0.28 tolerated(0.2) benign(0.008) TCGA-C5-A1BL-01 3 97983880 97983880 G A OR5H6 Missense_Mutation p.R251Q 0.32 tolerated(0.22) benign(0.06) TCGA-C5-A1BL-01 4 100237128 100237128 G T ADH1B Nonsense_Mutation p.S165* 0.23 TCGA-C5-A1BL-01 4 111542526 111542526 C T PITX2 Splice_Site p.X69_splice 0.14 TCGA-C5-A1BL-01 4 125631806 125631806 C T ANKRD50 5'UTR 0.15 TCGA-C5-A1BL-01 4 126411397 126411397 C G FAT4 Missense_Mutation p.P4474A 0.22 benign(0.008) TCGA-C5-A1BL-01 4 138453180 138453180 G A PCDH18 Silent p.F21F 0.19 TCGA-C5-A1BL-01 4 160253725 160253725 G C RAPGEF2 Missense_Mutation p.E510Q 0.21 tolerated(0.06) benign(0.23) TCGA-C5-A1BL-01 4 169433387 169433387 G A PALLD Silent p.Q244Q 0.32 TCGA-C5-A1BL-01 4 187540003 187540003 G A FAT1 Silent p.F2579F 0.20 TCGA-C5-A1BL-01 4 189061706 189061706 C G TRIML1 Missense_Mutation p.L145V 0.15 tolerated(0.97) benign(0.12) TCGA-C5-A1BL-01 4 189068346 189068346 C T TRIML1 Silent p.V409V 0.29 TCGA-C5-A1BL-01 4 3136143 3136143 C G HTT Missense_Mutation p.L837V 0.26 benign(0.125) TCGA-C5-A1BL-01 4 71509510 71509510 G C ENAM Missense_Mutation p.Q789H 0.15 tolerated(0.08) probably_damaging(0.94) TCGA-C5-A1BL-01 4 79368028 79368028 G A FRAS1 Missense_Mutation p.D2002N 0.40 benign(0.004) TCGA-C5-A1BL-01 4 8055963 8055963 G A ABLIM2 Silent p.I258I 0.07 TCGA-C5-A1BL-01 4 85731460 85731460 C G WDFY3 Missense_Mutation p.R642T 0.24 deleterious(0) possibly_damaging(0.739) TCGA-C5-A1BL-01 5 137235254 137235254 C G PKD2L2 Missense_Mutation p.L192V 0.10 tolerated(0.75) benign(0.002) TCGA-C5-A1BL-01 5 140047905 140047905 C G WDR55 Missense_Mutation p.S93C 0.04 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BL-01 5 140263677 140263677 G A PCDHA13 Silent p.S608S 0.19 TCGA-C5-A1BL-01 5 140744563 140744563 C G PCDHGA5 Silent p.L222L 0.23 TCGA-C5-A1BL-01 5 140755498 140755498 T C PCDHGA6 Silent p.L616L 0.09 TCGA-C5-A1BL-01 6 128403634 128403634 C T PTPRK Silent p.T575T 0.19 TCGA-C5-A1BL-01 6 137519721 137519721 G C IFNGR1 Nonsense_Mutation p.S306* 0.27 TCGA-C5-A1BL-01 6 144508376 144508376 C T STX11 Silent p.L204L 0.27 TCGA-C5-A1BL-01 6 26045824 26045824 G A HIST1H3C Silent p.L62L 0.08 TCGA-C5-A1BL-01 6 26156923 26156923 C T HIST1H1E Missense_Mutation p.S102L 0.20 deleterious(0) possibly_damaging(0.751) TCGA-C5-A1BL-01 6 27114365 27114365 G C HIST1H2BK Missense_Mutation p.F71L 0.07 deleterious_low_confidence(0.02) benign(0.291) TCGA-C5-A1BL-01 6 27419369 27419369 G A ZNF184 Silent p.L657L 0.21 TCGA-C5-A1BL-01 6 28212825 28212825 C T ZKSCAN4 3'UTR 0.29 TCGA-C5-A1BL-01 6 30691826 30691826 G A TUBB Silent p.Q329Q 0.32 TCGA-C5-A1BL-01 6 31868109 31868109 G A ZBTB12 Missense_Mutation p.S325L 0.39 tolerated(0.31) benign(0.307) TCGA-C5-A1BL-01 6 32137054 32137054 C T AGPAT1 Silent p.%3D 0.25 TCGA-C5-A1BL-01 6 46657053 46657053 G A TDRD6 Silent p.L396L 0.07 TCGA-C5-A1BL-01 6 56504768 56504768 C G DST Missense_Mutation p.E323Q 0.16 probably_damaging(0.998) TCGA-C5-A1BL-01 6 7581095 7581095 C T DSP Missense_Mutation p.R1558W 0.25 possibly_damaging(0.507) TCGA-C5-A1BL-01 7 100677044 100677044 G A MUC17 Missense_Mutation p.E783K 0.20 unknown(0) TCGA-C5-A1BL-01 7 100730990 100730990 G T TRIM56 Missense_Mutation p.D133Y 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-C5-A1BL-01 7 103141295 103141295 C T RELN Missense_Mutation p.G2855E 0.13 deleterious(0.03) benign(0.008) TCGA-C5-A1BL-01 7 110526718 110526718 G A IMMP2L Silent p.V113V 0.38 TCGA-C5-A1BL-01 7 112424409 112424409 C T TMEM168 Missense_Mutation p.E158K 0.16 deleterious(0) probably_damaging(0.996) TCGA-C5-A1BL-01 7 112723916 112723916 G C GPR85 Missense_Mutation p.F287L 0.09 deleterious(0.02) benign(0.2) TCGA-C5-A1BL-01 7 1273287 1273287 G C UNCX Missense_Mutation p.E136Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BL-01 7 131082109 131082109 C T MKLN1 Nonsense_Mutation p.Q162* 0.25 TCGA-C5-A1BL-01 7 141794572 141794572 T C MGAM Missense_Mutation p.F1560S 0.29 tolerated(0.12) benign(0.205) TCGA-C5-A1BL-01 7 143792716 143792716 G T OR2A12 Missense_Mutation p.K172N 0.11 deleterious(0.03) benign(0.035) TCGA-C5-A1BL-01 7 151845151 151845151 C A KMT2C Nonsense_Mutation p.E4621* 0.69 TCGA-C5-A1BL-01 7 37298896 37298896 C T ELMO1 Silent p.L101L 0.15 TCGA-C5-A1BL-01 7 38457484 38457484 C T AMPH Missense_Mutation p.A447T 0.08 tolerated(0.1) benign(0.002) TCGA-C5-A1BL-01 7 55214393 55214393 C G EGFR Silent p.L173L 0.34 TCGA-C5-A1BL-01 7 7412990 7412990 C T COL28A1 Silent p.V849V 0.04 TCGA-C5-A1BL-01 7 82595426 82595426 C G PCLO Missense_Mutation p.K1226N 0.14 unknown(0) TCGA-C5-A1BL-01 7 95217138 95217138 C T PDK4 Splice_Site p.X258_splice 0.07 TCGA-C5-A1BL-01 7 99709583 99709583 G C TAF6 Missense_Mutation p.Q291E 0.18 tolerated(0.49) probably_damaging(0.952) TCGA-C5-A1BL-01 7 99725636 99725636 G C MBLAC1 Silent p.L206L 0.08 TCGA-C5-A1BL-01 8 101154120 101154120 G A FBXO43 Missense_Mutation p.S121F 0.04 deleterious(0) possibly_damaging(0.682) TCGA-C5-A1BL-01 8 113256737 113256737 G C CSMD3 Missense_Mutation p.H3430D 0.22 deleterious(0.02) benign(0.001) TCGA-C5-A1BL-01 8 142367298 142367298 G A GPR20 Silent p.L242L 0.30 TCGA-C5-A1BL-01 8 145135043 145135043 C G EXOSC4 Missense_Mutation p.I123M 0.27 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BL-01 8 145698053 145698053 C T KIFC2 Missense_Mutation p.R609C 0.35 deleterious(0.05) benign(0.018) TCGA-C5-A1BL-01 8 30695564 30695564 G C TEX15 Missense_Mutation p.H2363D 0.11 tolerated(0.1) probably_damaging(0.999) TCGA-C5-A1BL-01 8 30889906 30889906 C G PURG Silent p.L131L 0.17 TCGA-C5-A1BL-01 8 37630362 37630362 G A PROSC Missense_Mutation p.E137K 0.19 tolerated(0.22) benign(0.038) TCGA-C5-A1BL-01 8 41552217 41552217 C T ANK1 Missense_Mutation p.D1115N 0.06 tolerated(0.81) possibly_damaging(0.871) TCGA-C5-A1BL-01 8 42587378 42587381 TCCA - CHRNB3 Frame_Shift_Del p.I311Lfs*38 0.22 TCGA-C5-A1BL-01 8 48701765 48701765 G C PRKDC Missense_Mutation p.Q3568E 0.21 benign(0.013) TCGA-C5-A1BL-01 8 48794602 48794602 C G PRKDC Missense_Mutation p.Q1610H 0.17 benign(0.019) TCGA-C5-A1BL-01 8 63939811 63939811 C T GGH Missense_Mutation p.G97R 0.15 deleterious(0) probably_damaging(1) TCGA-C5-A1BL-01 8 71128948 71128948 G A NCOA2 Silent p.P11P 0.23 TCGA-C5-A1BL-01 8 87076352 87076352 C T PSKH2 Missense_Mutation p.E232K 0.24 tolerated(0.08) possibly_damaging(0.85) TCGA-C5-A1BL-01 9 110068879 110068879 G A RAD23B Missense_Mutation p.E150K 0.22 deleterious(0.02) benign(0.002) TCGA-C5-A1BL-01 9 111745505 111745505 C G CTNNAL1 Missense_Mutation p.E274Q 0.14 tolerated(0.29) probably_damaging(0.957) TCGA-C5-A1BL-01 9 113198742 113198742 C A SVEP1 Missense_Mutation p.G1561V 0.23 probably_damaging(0.996) TCGA-C5-A1BL-01 9 116854235 116854235 C T KIF12 Missense_Mutation p.R483K 0.29 deleterious_low_confidence(0.03) benign(0.017) TCGA-C5-A1BL-01 9 117838840 117838840 T C TNC Missense_Mutation p.R897G 0.20 deleterious(0.01) possibly_damaging(0.676) TCGA-C5-A1BL-01 9 368025 368025 C G DOCK8 Missense_Mutation p.L563V 0.11 deleterious(0.01) possibly_damaging(0.787) TCGA-C5-A1BL-01 9 43625223 43625223 G A SPATA31A6 Missense_Mutation p.S1155L 0.17 tolerated(0.32) benign(0.162) TCGA-C5-A1BL-01 9 84607959 84607959 G T SPATA31D1 Missense_Mutation p.K858N 0.12 tolerated(0.08) possibly_damaging(0.623) TCGA-C5-A1BL-01 9 93636954 93636954 G A SYK Missense_Mutation p.G335D 0.31 tolerated(0.66) benign(0.002) TCGA-C5-A1BL-01 X 105152804 105152804 C T NRK Nonsense_Mutation p.Q392* 0.17 TCGA-C5-A1BL-01 X 105153049 105153049 G C NRK Silent p.R473R 0.23 TCGA-C5-A1BL-01 X 109964648 109964648 G A CHRDL1 Missense_Mutation p.R138W 0.07 deleterious(0) probably_damaging(1) TCGA-C5-A1BL-01 X 11207064 11207064 G A ARHGAP6 Silent p.V287V 0.29 TCGA-C5-A1BL-01 X 11207091 11207091 C A ARHGAP6 Missense_Mutation p.Q278H 0.30 deleterious(0.03) probably_damaging(0.96) TCGA-C5-A1BL-01 X 118797452 118797452 C T SEPT6 Missense_Mutation p.E112K 0.09 deleterious(0.04) benign(0.174) TCGA-C5-A1BL-01 X 129041400 129041400 G A UTP14A Silent p.L28L 0.19 TCGA-C5-A1BL-01 X 135570361 135570361 G A BRS3 Missense_Mutation p.D30N 0.37 tolerated(0.23) benign(0.202) TCGA-C5-A1BL-01 X 139866366 139866366 C A CDR1 Missense_Mutation p.D56Y 0.35 deleterious(0) possibly_damaging(0.729) TCGA-C5-A1BL-01 X 149931144 149931144 C A MTMR1 Nonsense_Mutation p.S647* 0.17 TCGA-C5-A1BL-01 X 152938520 152938520 C G PNCK Silent p.L87L 0.10 TCGA-C5-A1BL-01 X 153277248 153277248 G A IRAK1 3'UTR 0.08 TCGA-C5-A1BL-01 X 15349415 15349415 G A PIGA Missense_Mutation p.T213I 0.04 tolerated(0.11) benign(0.14) TCGA-C5-A1BL-01 X 24024244 24024244 C T KLHL15 Silent p.L189L 0.19 TCGA-C5-A1BL-01 X 3228968 3228968 C T MXRA5 Missense_Mutation p.E2426K 0.45 deleterious(0.01) probably_damaging(0.987) TCGA-C5-A1BL-01 X 37028882 37028882 G A FAM47C Missense_Mutation p.R800H 0.07 tolerated(0.67) benign(0.055) TCGA-C5-A1BL-01 X 46332703 46332703 T C KRBOX4 3'UTR 0.12 TCGA-C5-A1BL-01 X 48925127 48925127 G A CCDC120 Missense_Mutation p.G458S 0.33 tolerated(0.07) benign(0.007) TCGA-C5-A1BL-01 X 53280293 53280293 C T IQSEC2 Missense_Mutation p.E489K 0.08 deleterious(0.03) benign(0.425) TCGA-C5-A1BL-01 X 92928398 92928398 G A NAP1L3 5'UTR 0.38 TCGA-C5-A1BM-01 10 103827650 103827650 G A HPS6 3'UTR 0.35 TCGA-C5-A1BM-01 10 75258749 75258749 G A USP54 Nonsense_Mutation p.Q1565* 0.40 TCGA-C5-A1BM-01 10 89685300 89685300 C G PTEN Nonsense_Mutation p.Y65* 0.35 TCGA-C5-A1BM-01 10 96741048 96741048 G C CYP2C9 Missense_Mutation p.R357T 0.37 deleterious(0) probably_damaging(1) TCGA-C5-A1BM-01 10 98714983 98714983 C T LCOR Silent p.F202F 0.42 TCGA-C5-A1BM-01 11 117150913 117150913 G A RNF214 Silent p.E361E 0.35 TCGA-C5-A1BM-01 11 13441050 13441050 C G BTBD10 Missense_Mutation p.D181H 0.27 deleterious(0) probably_damaging(0.993) TCGA-C5-A1BM-01 11 19251015 19251015 C G E2F8 Missense_Mutation p.E627Q 0.05 tolerated(0.12) possibly_damaging(0.653) TCGA-C5-A1BM-01 11 27384593 27384593 G A CCDC34 Missense_Mutation p.S50L 0.33 tolerated(0.41) benign(0) TCGA-C5-A1BM-01 11 33763601 33763601 C A FBXO3 Missense_Mutation p.M423I 0.17 tolerated_low_confidence(0.45) unknown(0) TCGA-C5-A1BM-01 11 56128642 56128642 C A OR8J1 Missense_Mutation p.T307K 0.28 tolerated(1) benign(0.001) TCGA-C5-A1BM-01 11 5776878 5776878 G T OR52N4 Missense_Mutation p.R303L 0.26 deleterious(0.01) possibly_damaging(0.519) TCGA-C5-A1BM-01 11 66109569 66109569 G C BRMS1 Missense_Mutation p.S46C 0.31 deleterious(0) probably_damaging(0.971) TCGA-C5-A1BM-01 11 66460084 66460084 C T SPTBN2 Missense_Mutation p.D1705N 0.17 deleterious(0) probably_damaging(0.99) TCGA-C5-A1BM-01 11 6649939 6649939 C G DCHS1 Missense_Mutation p.E1762Q 0.30 deleterious(0) probably_damaging(1) TCGA-C5-A1BM-01 11 68704244 68704244 G A IGHMBP2 Missense_Mutation p.G766R 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-C5-A1BM-01 11 7960477 7960477 G C OR10A3 Missense_Mutation p.I197M 0.20 tolerated(0.45) benign(0.363) TCGA-C5-A1BM-01 12 110778588 110778588 G A ATP2A2 Missense_Mutation p.G629D 0.28 tolerated(0.08) benign(0.04) TCGA-C5-A1BM-01 12 113354322 113354322 G C OAS1 Missense_Mutation p.K221N 0.34 deleterious(0.04) benign(0.007) TCGA-C5-A1BM-01 12 114386651 114386651 G A RBM19 Silent p.L421L 0.21 TCGA-C5-A1BM-01 12 117426609 117426609 G A FBXW8 Missense_Mutation p.D392N 0.25 deleterious(0.01) probably_damaging(0.946) TCGA-C5-A1BM-01 12 20782869 20782869 C G PDE3A Nonsense_Mutation p.S523* 0.28 TCGA-C5-A1BM-01 12 21919523 21919523 C A KCNJ8 Missense_Mutation p.V137F 0.25 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BM-01 12 21968729 21968730 - CTTAAGAA ABCC9 Frame_Shift_Ins p.H1331Ffs*48 0.12 TCGA-C5-A1BM-01 12 49427595 49427595 G C KMT2D Silent p.L3631L 0.21 TCGA-C5-A1BM-01 12 49427852 49427852 G A KMT2D Nonsense_Mutation p.Q3580* 0.34 TCGA-C5-A1BM-01 12 50384052 50384052 C T RACGAP1 Silent p.%3D 0.31 TCGA-C5-A1BM-01 12 52168059 52168059 C A SCN8A Silent p.I1244I 0.29 TCGA-C5-A1BM-01 12 57921757 57921757 C G MBD6 Nonsense_Mutation p.S788* 0.19 TCGA-C5-A1BM-01 12 78444560 78444560 T C NAV3 Missense_Mutation p.F717L 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-C5-A1BM-01 14 100615443 100615443 G A DEGS2 Silent p.F229F 0.24 TCGA-C5-A1BM-01 14 104639437 104639437 C T KIF26A Missense_Mutation p.S515F 0.23 deleterious(0) probably_damaging(0.988) TCGA-C5-A1BM-01 14 70234911 70234911 C G SRSF5 Missense_Mutation p.P13R 0.28 tolerated(0.2) benign(0.27) TCGA-C5-A1BM-01 14 77978688 77978688 C T SPTLC2 Missense_Mutation p.R543Q 0.28 deleterious(0.04) benign(0.011) TCGA-C5-A1BM-01 14 92905693 92905693 C G SLC24A4 Missense_Mutation p.F111L 0.23 deleterious(0) probably_damaging(0.971) TCGA-C5-A1BM-01 15 41768712 41768712 G A RTF1 Silent p.L517L 0.31 TCGA-C5-A1BM-01 15 56155208 56155208 G C NEDD4 Missense_Mutation p.L540V 0.33 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BM-01 15 64204182 64204182 G A DAPK2 Silent p.F319F 0.18 TCGA-C5-A1BM-01 15 79750330 79750330 C T KIAA1024 Missense_Mutation p.S614L 0.31 tolerated(0.05) benign(0.017) TCGA-C5-A1BM-01 15 90347826 90347826 C T ANPEP Missense_Mutation p.S307N 0.23 tolerated(0.24) benign(0.008) TCGA-C5-A1BM-01 16 15814153 15814153 G A MYH11 Missense_Mutation p.T1610M 0.27 possibly_damaging(0.79) TCGA-C5-A1BM-01 16 2137872 2137872 C G TSC2 Missense_Mutation p.F1666L 0.23 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BM-01 16 22359077 22359077 C G CDR2 Missense_Mutation p.E192Q 0.28 deleterious(0.01) possibly_damaging(0.843) TCGA-C5-A1BM-01 16 24788506 24788506 G A TNRC6A Missense_Mutation p.R139Q 0.27 deleterious(0.03) benign(0.033) TCGA-C5-A1BM-01 16 30536174 30536174 G C ZNF768 Missense_Mutation p.F429L 0.32 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-C5-A1BM-01 16 66919167 66919167 C T PDP2 Missense_Mutation p.S327L 0.22 deleterious(0.03) possibly_damaging(0.598) TCGA-C5-A1BM-01 16 9024213 9024213 C A USP7 Missense_Mutation p.V41L 0.32 tolerated(0.38) benign(0.019) TCGA-C5-A1BM-01 17 29631855 29631855 C T EVI2B Missense_Mutation p.R258K 0.23 tolerated(0.16) possibly_damaging(0.567) TCGA-C5-A1BM-01 17 51900366 51900366 A G KIF2B 5'UTR 0.29 TCGA-C5-A1BM-01 17 60344588 60344588 G C TBC1D3P2 RNA 0.22 TCGA-C5-A1BM-01 17 62020421 62020421 C T SCN4A Silent p.T1351T 0.21 TCGA-C5-A1BM-01 17 7155834 7155834 G T ELP5 Nonsense_Mutation p.E5* 0.17 TCGA-C5-A1BM-01 17 72245514 72245514 G A TTYH2 Silent p.Q302Q 0.24 TCGA-C5-A1BM-01 17 74078433 74078433 G A EXOC7 3'Flank 0.29 TCGA-C5-A1BM-01 17 74865078 74865078 C T MGAT5B 5'Flank 0.30 TCGA-C5-A1BM-01 17 76501504 76501504 G C DNAH17 Silent p.L1605L 0.26 TCGA-C5-A1BM-01 18 13099491 13099491 C T CEP192 Missense_Mutation p.L2192F 0.27 deleterious(0) probably_damaging(0.998) TCGA-C5-A1BM-01 18 18539802 18539802 C G ROCK1 Missense_Mutation p.D1171H 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A1BM-01 18 19192399 19192399 C G SNRPD1 Silent p.L3L 0.25 TCGA-C5-A1BM-01 18 31323474 31323474 C G ASXL3 Missense_Mutation p.S1221C 0.24 possibly_damaging(0.85) TCGA-C5-A1BM-01 18 33554887 33554887 T G C18orf21 Missense_Mutation p.C43W 0.28 deleterious(0) probably_damaging(1) TCGA-C5-A1BM-01 19 1062282 1062282 G C ABCA7 Silent p.L1894L 0.19 TCGA-C5-A1BM-01 19 12740056 12740056 G C ZNF791 Missense_Mutation p.M571I 0.36 deleterious(0.05) benign(0.003) TCGA-C5-A1BM-01 19 14040433 14040433 G A CC2D1A Silent p.Q890Q 0.50 TCGA-C5-A1BM-01 19 14041055 14041055 G A CC2D1A Missense_Mutation p.D930N 0.22 deleterious(0) benign(0.149) TCGA-C5-A1BM-01 19 16640543 16640543 C G CHERP Missense_Mutation p.A349P 0.57 tolerated(0.19) benign(0.367) TCGA-C5-A1BM-01 19 22585688 22585688 T A ZNF98 Splice_Site p.X53_splice 0.21 TCGA-C5-A1BM-01 19 2717432 2717432 C T DIRAS1 Missense_Mutation p.E125K 0.17 deleterious(0) possibly_damaging(0.894) TCGA-C5-A1BM-01 19 36508769 36508769 C T CLIP3 Silent p.G436G 0.37 TCGA-C5-A1BM-01 19 38876294 38876294 G A GGN Silent p.G536G 0.18 TCGA-C5-A1BM-01 19 45801453 45801453 G A MARK4 Intron 0.31 TCGA-C5-A1BM-01 19 47422099 47422099 C T ARHGAP35 Missense_Mutation p.S56F 0.23 deleterious(0) probably_damaging(1) TCGA-C5-A1BM-01 19 47823477 47823477 G A C5AR1 Missense_Mutation p.R148Q 0.30 deleterious(0) probably_damaging(1) TCGA-C5-A1BM-01 19 48869139 48869139 G A SYNGR4 Missense_Mutation p.E14K 0.21 deleterious(0.02) benign(0.025) TCGA-C5-A1BM-01 19 53384853 53384853 G A ZNF320 Missense_Mutation p.L176F 0.17 tolerated(0.06) benign(0.21) TCGA-C5-A1BM-01 19 55594890 55594890 G A EPS8L1 Intron 0.33 TCGA-C5-A1BM-01 19 5729880 5729880 C T CATSPERD Intron 0.20 TCGA-C5-A1BM-01 19 58472918 58472918 G A C19orf18 Nonsense_Mutation p.R125* 0.26 TCGA-C5-A1BM-01 19 59082771 59082771 C G MZF1 5'UTR 0.31 TCGA-C5-A1BM-01 19 9068371 9068371 C G MUC16 Missense_Mutation p.E6359Q 0.24 unknown(0) TCGA-C5-A1BM-01 1 107937833 107937833 C T NTNG1 Silent p.C315C 0.43 TCGA-C5-A1BM-01 1 11184646 11184646 C G MTOR Missense_Mutation p.D2191H 0.28 deleterious(0) probably_damaging(0.995) TCGA-C5-A1BM-01 1 151021205 151021205 C T C1orf56 Silent p.L294L 0.19 TCGA-C5-A1BM-01 1 161332348 161332348 G T SDHC 3'UTR 0.16 TCGA-C5-A1BM-01 1 169771780 169771780 G A C1orf112 Missense_Mutation p.D29N 0.22 tolerated(0.53) benign(0.015) TCGA-C5-A1BM-01 1 178822038 178822038 G C ANGPTL1 Missense_Mutation p.I356M 0.21 deleterious(0.03) possibly_damaging(0.517) TCGA-C5-A1BM-01 1 203667305 203667305 G C ATP2B4 Missense_Mutation p.D72H 0.09 deleterious(0) probably_damaging(1) TCGA-C5-A1BM-01 1 205027456 205027456 C T CNTN2 Silent p.V121V 0.09 TCGA-C5-A1BM-01 1 207078188 207078188 A T FAIM3 3'UTR 0.25 TCGA-C5-A1BM-01 1 43784988 43784988 G A TIE1 Missense_Mutation p.R1002Q 0.27 deleterious(0) probably_damaging(0.995) TCGA-C5-A1BM-01 1 66384436 66384436 G C PDE4B Missense_Mutation p.E67Q 0.22 tolerated_low_confidence(0.12) benign(0.001) TCGA-C5-A1BM-01 1 77685079 77685079 G A PIGK Silent p.V3V 0.19 TCGA-C5-A1BM-01 20 3175951 3175951 C T DDRGK1 Missense_Mutation p.E187K 0.18 deleterious(0.03) probably_damaging(0.995) TCGA-C5-A1BM-01 20 41101176 41101176 C T PTPRT Missense_Mutation p.E394K 0.25 tolerated(0.81) benign(0.009) TCGA-C5-A1BM-01 21 45194154 45194154 C T CSTB Missense_Mutation p.E76K 0.22 tolerated(0.13) benign(0.239) TCGA-C5-A1BM-01 22 21188890 21188890 T C PI4KA Silent p.K109K 0.33 TCGA-C5-A1BM-01 22 42610503 42610503 G C TCF20 Missense_Mutation p.S270C 0.23 possibly_damaging(0.759) TCGA-C5-A1BM-01 22 43565515 43565515 C T TTLL12 Silent p.T545T 0.17 TCGA-C5-A1BM-01 22 44282265 44282266 - C PNPLA5 Frame_Shift_Ins p.L290Pfs*19 0.19 TCGA-C5-A1BM-01 22 46722476 46722476 C G GTSE1 Missense_Mutation p.P550R 0.24 deleterious(0.02) benign(0.173) TCGA-C5-A1BM-01 22 47064702 47064702 C G GRAMD4 Missense_Mutation p.F327L 0.23 tolerated(0.51) benign(0.09) TCGA-C5-A1BM-01 22 50704989 50704989 G A MAPK11 Missense_Mutation p.A221V 0.22 tolerated(0.49) benign(0.022) TCGA-C5-A1BM-01 2 120124587 120124587 C G DBI 5'Flank 0.30 TCGA-C5-A1BM-01 2 128712902 128712902 C T SAP130 Missense_Mutation p.E720K 0.25 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-C5-A1BM-01 2 176988751 176988751 G C HOXD9 Missense_Mutation p.E303Q 0.32 deleterious(0) probably_damaging(1) TCGA-C5-A1BM-01 2 179473514 179473514 C G TTN Missense_Mutation p.K17408N 0.24 TCGA-C5-A1BM-01 2 187693277 187693277 G C ZSWIM2 Missense_Mutation p.Q446E 0.24 tolerated(0.07) benign(0.018) TCGA-C5-A1BM-01 2 190593499 190593499 G A ANKAR Missense_Mutation p.E1049K 0.27 deleterious(0.03) benign(0.097) TCGA-C5-A1BM-01 2 20189768 20189768 G A WDR35 Silent p.F3F 0.24 TCGA-C5-A1BM-01 2 202074061 202074061 C T CASP10 Silent p.F397F 0.18 TCGA-C5-A1BM-01 2 21234642 21234642 C T APOB Missense_Mutation p.D1700N 0.23 probably_damaging(0.996) TCGA-C5-A1BM-01 2 219321885 219321885 C T USP37 Splice_Site p.X882_splice 0.41 TCGA-C5-A1BM-01 2 223423365 223423365 C G SGPP2 Silent p.L316L 0.30 TCGA-C5-A1BM-01 2 27669207 27669207 T C IFT172 Missense_Mutation p.R1559G 0.16 deleterious(0) benign(0.07) TCGA-C5-A1BM-01 2 68804999 68804999 G C APLF Missense_Mutation p.E461Q 0.26 deleterious(0.02) probably_damaging(0.931) TCGA-C5-A1BM-01 2 69554097 69554097 C T GFPT1 Silent p.V668V 0.24 TCGA-C5-A1BM-01 2 79349971 79349971 G A REG1A Missense_Mutation p.R109H 0.27 tolerated(0.42) possibly_damaging(0.842) TCGA-C5-A1BM-01 2 96970571 96970571 G A SNRNP200 Silent p.L27L 0.29 TCGA-C5-A1BM-01 3 101311589 101311589 G C PCNP Missense_Mutation p.D177H 0.20 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-C5-A1BM-01 3 137729133 137729133 C T CLDN18 Silent p.I22I 0.13 TCGA-C5-A1BM-01 3 151046485 151046485 G A P2RY13 Missense_Mutation p.S120L 0.20 deleterious(0) possibly_damaging(0.612) TCGA-C5-A1BM-01 3 155571018 155571018 G C SLC33A1 Missense_Mutation p.L257V 0.13 deleterious(0) benign(0.149) TCGA-C5-A1BM-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.18 deleterious(0.04) probably_damaging(0.96) TCGA-C5-A1BM-01 3 33863539 33863539 G A PDCD6IP Missense_Mutation p.D143N 0.44 deleterious(0.03) possibly_damaging(0.764) TCGA-C5-A1BM-01 3 38164399 38164399 G C ACAA1 3'UTR 0.53 TCGA-C5-A1BM-01 3 52437782 52437782 G C BAP1 Nonsense_Mutation p.S460* 0.35 TCGA-C5-A1BM-01 4 108911144 108911144 C T HADH Missense_Mutation p.S19L 0.37 tolerated(0.19) benign(0.388) TCGA-C5-A1BM-01 4 140264026 140264026 C A NAA15 Nonsense_Mutation p.S150* 0.26 TCGA-C5-A1BM-01 4 2514238 2514238 C T RNF4 Silent p.D96D 0.20 TCGA-C5-A1BM-01 4 40825700 40825700 C G APBB2 Missense_Mutation p.M631I 0.26 tolerated(0.07) benign(0.018) TCGA-C5-A1BM-01 4 48492817 48492817 C T ZAR1 Missense_Mutation p.P170L 0.31 tolerated(0.26) benign(0.001) TCGA-C5-A1BM-01 4 57244534 57244534 C T AASDH Missense_Mutation p.E150K 0.29 tolerated(0.17) benign(0.41) TCGA-C5-A1BM-01 4 94750668 94750668 A G ATOH1 Silent p.K197K 0.20 TCGA-C5-A1BM-01 4 9784379 9784379 C T DRD5 Silent p.I242I 0.39 TCGA-C5-A1BM-01 5 115351427 115351427 C T AQPEP Silent p.D907D 0.26 TCGA-C5-A1BM-01 5 1216712 1216712 C G SLC6A19 Missense_Mutation p.I309M 0.35 deleterious(0) probably_damaging(0.973) TCGA-C5-A1BM-01 5 171299926 171299926 G A FBXW11 Silent p.L409L 0.17 TCGA-C5-A1BM-01 5 52206174 52206174 G C ITGA1 Silent p.P594P 0.29 TCGA-C5-A1BM-01 5 66456416 66456416 G A MAST4 Missense_Mutation p.E1261K 0.29 probably_damaging(0.996) TCGA-C5-A1BM-01 6 110107564 110107564 G C FIG4 Missense_Mutation p.E670Q 0.06 tolerated(0.49) benign(0.017) TCGA-C5-A1BM-01 6 12125377 12125377 G C HIVEP1 Missense_Mutation p.L1783F 0.33 deleterious(0.03) possibly_damaging(0.726) TCGA-C5-A1BM-01 6 18236826 18236826 C G DEK Missense_Mutation p.E302Q 0.26 tolerated(0.16) probably_damaging(0.932) TCGA-C5-A1BM-01 6 26217416 26217416 C G HIST1H2AE Missense_Mutation p.R72G 0.24 deleterious_low_confidence(0) possibly_damaging(0.685) TCGA-C5-A1BM-01 6 29599339 29599339 G C GABBR1 Missense_Mutation p.I41M 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-C5-A1BM-01 6 30297275 30297275 G C TRIM39 Missense_Mutation p.E61Q 0.26 tolerated(0.46) possibly_damaging(0.735) TCGA-C5-A1BM-01 6 88854027 88854027 C G CNR1 Missense_Mutation p.E323Q 0.05 tolerated(0.17) probably_damaging(0.95) TCGA-C5-A1BM-01 7 101844749 101844749 C T CUX1 Silent p.L735L 0.29 TCGA-C5-A1BM-01 7 142563735 142563735 G C EPHB6 Missense_Mutation p.E375Q 0.15 tolerated(0.08) possibly_damaging(0.794) TCGA-C5-A1BM-01 7 154379724 154379724 C G DPP6 Intron 0.25 TCGA-C5-A1BM-01 7 155100186 155100186 G A INSIG1 3'UTR 0.11 TCGA-C5-A1BM-01 7 31890315 31890315 G C PDE1C Nonsense_Mutation p.S324* 0.28 TCGA-C5-A1BM-01 7 43992117 43992117 C T UBE2D4 Intron 0.27 TCGA-C5-A1BM-01 7 55248974 55248974 C G EGFR Intron 0.29 TCGA-C5-A1BM-01 7 55249069 55249069 C G EGFR Missense_Mutation p.I789M 0.25 deleterious(0) possibly_damaging(0.888) TCGA-C5-A1BM-01 7 55249134 55249134 C G EGFR Missense_Mutation p.S811C 0.22 deleterious(0.04) probably_damaging(1) TCGA-C5-A1BM-01 7 84751142 84751142 C T SEMA3D Silent p.L22L 0.30 TCGA-C5-A1BM-01 7 99051700 99051700 C T CPSF4 Nonsense_Mutation p.Q228* 0.34 TCGA-C5-A1BM-01 8 139629165 139629165 C T COL22A1 Missense_Mutation p.G1288S 0.24 unknown(0) TCGA-C5-A1BM-01 8 145659414 145659414 G T TONSL Missense_Mutation p.P1112T 0.34 tolerated(0.52) benign(0.125) TCGA-C5-A1BM-01 8 19363168 19363168 C T CSGALNACT1 Missense_Mutation p.V60I 0.27 tolerated(0.24) benign(0.001) TCGA-C5-A1BM-01 8 43025773 43025773 C T HGSNAT Nonsense_Mutation p.Q227* 0.20 TCGA-C5-A1BM-01 8 6793457 6793457 C T DEFA4 3'UTR 0.25 TCGA-C5-A1BM-01 8 73480393 73480393 C T KCNB2 Missense_Mutation p.H142Y 0.39 tolerated(0.09) benign(0.342) TCGA-C5-A1BM-01 9 107298226 107298226 G A OR13C3 Missense_Mutation p.A290V 0.31 tolerated(0.29) possibly_damaging(0.907) TCGA-C5-A1BM-01 9 123298654 123298654 C G CDK5RAP2 Missense_Mutation p.D220H 0.25 deleterious(0) possibly_damaging(0.861) TCGA-C5-A1BM-01 9 14801858 14801858 C G FREM1 Missense_Mutation p.Q1162H 0.27 tolerated(0.17) benign(0.005) TCGA-C5-A1BM-01 9 33038921 33038921 C G DNAJA1 3'UTR 0.33 TCGA-C5-A1BM-01 X 100658843 100658843 C G GLA Missense_Mutation p.D109H 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1BM-01 X 11682476 11682476 G A ARHGAP6 Missense_Mutation p.S158L 0.22 deleterious_low_confidence(0.04) benign(0.054) TCGA-C5-A1BM-01 X 130218322 130218322 C T ARHGAP36 Missense_Mutation p.P230L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1BM-01 X 151900161 151900161 C T MAGEA12 Missense_Mutation p.D214N 0.24 tolerated(1) benign(0.009) TCGA-C5-A1BM-01 X 18283732 18283732 C G SCML2 Missense_Mutation p.R307S 0.23 deleterious(0.04) benign(0.071) TCGA-C5-A1BM-01 X 34148721 34148721 C T FAM47A Missense_Mutation p.E559K 0.30 deleterious(0.04) possibly_damaging(0.801) TCGA-C5-A1BM-01 X 41077746 41077746 G A USP9X Missense_Mutation p.E2111K 0.28 deleterious(0) probably_damaging(0.952) TCGA-C5-A1BM-01 X 46332435 46332435 G C KRBOX4 Missense_Mutation p.K168N 0.30 deleterious_low_confidence(0.02) unknown(0) TCGA-C5-A1BM-01 X 49143337 49143337 G A PPP1R3F Missense_Mutation p.E729K 0.25 tolerated_low_confidence(0.08) benign(0.011) TCGA-C5-A1BM-01 X 68382141 68382141 C A PJA1 Missense_Mutation p.S314I 0.06 deleterious(0.04) benign(0.017) TCGA-C5-A1BM-01 X 77913926 77913926 G A ZCCHC5 5'UTR 0.36 TCGA-C5-A1BN-01 10 116203811 116203811 C T ABLIM1 Missense_Mutation p.R637H 0.34 tolerated(0.14) possibly_damaging(0.512) TCGA-C5-A1BN-01 10 121586539 121586539 A T INPP5F Silent p.V882V 0.37 TCGA-C5-A1BN-01 10 60566844 60566844 C T BICC1 Missense_Mutation p.P768S 0.73 deleterious(0) probably_damaging(0.959) TCGA-C5-A1BN-01 10 61847994 61847994 C T ANK3 Missense_Mutation p.G1151S 0.21 probably_damaging(0.999) TCGA-C5-A1BN-01 10 86018409 86018409 G C RGR 3'UTR 0.25 TCGA-C5-A1BN-01 11 111948979 111948979 A C C11orf57 Missense_Mutation p.E37A 0.45 deleterious(0.02) benign(0.423) TCGA-C5-A1BN-01 11 120186099 120186099 C G POU2F3 Silent p.L368L 0.51 TCGA-C5-A1BN-01 11 64939411 64939411 C G SPDYC Intron 0.14 TCGA-C5-A1BN-01 12 120966892 120966892 G A COQ5 Missense_Mutation p.S18L 0.44 tolerated_low_confidence(0.19) benign(0.002) TCGA-C5-A1BN-01 12 58019065 58019065 C T SLC26A10 Silent p.T475T 0.42 TCGA-C5-A1BN-01 13 19751573 19751573 G T TUBA3C Missense_Mutation p.P184T 0.60 deleterious_low_confidence(0) probably_damaging(1) TCGA-C5-A1BN-01 14 69349243 69349243 C A ACTN1 Nonsense_Mutation p.E629* 0.40 TCGA-C5-A1BN-01 15 41988737 41988737 C T MGA Missense_Mutation p.T510I 0.33 tolerated(0.17) benign(0.007) TCGA-C5-A1BN-01 15 52188684 52188684 C T TMOD3 Silent p.F232F 0.32 TCGA-C5-A1BN-01 16 15704957 15704957 G C KIAA0430 Nonsense_Mutation p.S1209* 0.33 TCGA-C5-A1BN-01 16 25186283 25186283 G A LCMT1 Missense_Mutation p.E304K 0.31 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BN-01 16 28913228 28913228 G C ATP2A1 Missense_Mutation p.E715D 0.14 tolerated(1) probably_damaging(0.981) TCGA-C5-A1BN-01 17 10304986 10304986 G C MYH8 Missense_Mutation p.I935M 0.67 tolerated(0.78) benign(0.01) TCGA-C5-A1BN-01 17 27075426 27075426 C G TRAF4 Silent p.V203V 0.45 TCGA-C5-A1BN-01 17 44115926 44115926 G T KANSL1 Nonsense_Mutation p.S840* 0.35 TCGA-C5-A1BN-01 17 73819469 73819469 G A UNK Missense_Mutation p.E715K 0.64 tolerated(0.17) benign(0.278) TCGA-C5-A1BN-01 19 11685947 11685947 C T ACP5 Missense_Mutation p.E286K 0.36 tolerated(0.89) benign(0.008) TCGA-C5-A1BN-01 19 17001291 17001291 C G F2RL3 Missense_Mutation p.I339M 0.25 deleterious(0) possibly_damaging(0.664) TCGA-C5-A1BN-01 19 36940268 36940268 T C ZNF566 Missense_Mutation p.K291E 0.27 deleterious(0) probably_damaging(0.999) TCGA-C5-A1BN-01 19 37903935 37903935 C G ZNF569 Missense_Mutation p.R542T 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-C5-A1BN-01 19 38976785 38976785 C T RYR1 Silent p.V1830V 0.28 TCGA-C5-A1BN-01 19 39877206 39877206 G A PAF1 Missense_Mutation p.R367W 0.34 deleterious(0) probably_damaging(1) TCGA-C5-A1BN-01 19 41450687 41450687 C G AC092071.1 5'Flank 0.25 TCGA-C5-A1BN-01 19 51228632 51228632 G C CLEC11A Missense_Mutation p.E294Q 0.17 tolerated(0.19) probably_damaging(1) TCGA-C5-A1BN-01 19 57088530 57088530 C T ZNF470 Missense_Mutation p.L245F 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-C5-A1BN-01 19 58596432 58596432 C T ZSCAN18 Missense_Mutation p.V441I 0.44 tolerated(0.34) benign(0.012) TCGA-C5-A1BN-01 1 110031523 110031523 G A ATXN7L2 Missense_Mutation p.V280M 0.39 deleterious(0.03) probably_damaging(0.995) TCGA-C5-A1BN-01 1 11907423 11907423 G A NPPA Missense_Mutation p.P66L 0.32 tolerated(0.1) benign(0.051) TCGA-C5-A1BN-01 1 147091935 147091935 G A BCL9 Missense_Mutation p.M658I 0.47 tolerated(0.42) benign(0) TCGA-C5-A1BN-01 1 147092680 147092681 - C BCL9 Frame_Shift_Ins p.V910Cfs*42 0.29 TCGA-C5-A1BN-01 1 186275501 186275501 C A PRG4 Missense_Mutation p.P217Q 0.24 possibly_damaging(0.603) TCGA-C5-A1BN-01 1 3319365 3319365 G A PRDM16 Silent p.T229T 0.29 TCGA-C5-A1BN-01 1 87038329 87038329 C T CLCA4 Nonsense_Mutation p.Q465* 0.27 TCGA-C5-A1BN-01 20 57564055 57564055 G C NELFCD Missense_Mutation p.L179F 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-C5-A1BN-01 20 61574475 61574475 G C GID8 Missense_Mutation p.L85F 0.29 deleterious(0.03) probably_damaging(0.977) TCGA-C5-A1BN-01 21 30953833 30953833 G T GRIK1 Missense_Mutation p.H608Q 0.56 deleterious(0) possibly_damaging(0.708) TCGA-C5-A1BN-01 22 20103949 20103949 C G RANBP1 5'Flank 0.41 TCGA-C5-A1BN-01 22 50582543 50582543 G A MOV10L1 Silent p.P792P 0.33 TCGA-C5-A1BN-01 2 132266119 132266119 G A AC093838.4 RNA 0.39 TCGA-C5-A1BN-01 2 16746924 16746924 T C FAM49A Missense_Mutation p.E61G 0.03 deleterious(0.01) possibly_damaging(0.672) TCGA-C5-A1BN-01 2 1805482 1805482 T A MYT1L Nonsense_Mutation p.K1086* 0.31 TCGA-C5-A1BN-01 2 201371660 201371660 C T KCTD18 Missense_Mutation p.R27Q 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-C5-A1BN-01 2 207173954 207173954 A C ZDBF2 Missense_Mutation p.I1568L 0.38 tolerated(0.34) benign(0) TCGA-C5-A1BN-01 2 233899464 233899464 C T NEU2 Silent p.P280P 0.62 TCGA-C5-A1BN-01 2 238287552 238287552 G A COL6A3 Missense_Mutation p.H742Y 0.61 possibly_damaging(0.868) TCGA-C5-A1BN-01 2 74902126 74902126 C T SEMA4F Silent p.V371V 0.20 TCGA-C5-A1BN-01 3 121186375 121186375 G T POLQ Missense_Mutation p.P2320T 0.41 deleterious(0) probably_damaging(1) TCGA-C5-A1BN-01 3 128598506 128598506 G C ACAD9 5'UTR 0.32 TCGA-C5-A1BN-01 3 156271474 156271474 T C SSR3 Missense_Mutation p.Y77C 0.33 tolerated(0.14) possibly_damaging(0.822) TCGA-C5-A1BN-01 3 169496994 169496994 C A MYNN Silent p.L235L 0.31 TCGA-C5-A1BN-01 3 170819317 170819317 T G TNIK Missense_Mutation p.S838R 0.39 deleterious(0) benign(0.062) TCGA-C5-A1BN-01 3 17279867 17279867 T C TBC1D5 Missense_Mutation p.N459S 0.74 tolerated(1) benign(0.002) TCGA-C5-A1BN-01 3 41291022 41291022 C T ULK4 Missense_Mutation p.G1241D 0.27 tolerated(0.11) benign(0.037) TCGA-C5-A1BN-01 3 46944832 46944832 G A PTH1R Missense_Mutation p.G490R 0.73 deleterious(0.01) possibly_damaging(0.632) TCGA-C5-A1BN-01 3 47162506 47162506 G C SETD2 Missense_Mutation p.S1207C 0.59 deleterious_low_confidence(0.01) benign(0.03) TCGA-C5-A1BN-01 4 79841684 79841684 A G PAQR3 3'UTR 0.80 TCGA-C5-A1BN-01 4 88415045 88415045 C T SPARCL1 Missense_Mutation p.E303K 0.61 deleterious(0.04) benign(0.055) TCGA-C5-A1BN-01 4 88415720 88415720 C G SPARCL1 Missense_Mutation p.E78Q 0.89 deleterious(0.01) benign(0.141) TCGA-C5-A1BN-01 5 13762864 13762864 G T DNAH5 Missense_Mutation p.F3416L 0.30 benign(0.418) TCGA-C5-A1BN-01 6 116757050 116757050 C T DSE Silent p.Y473Y 0.39 TCGA-C5-A1BN-01 6 139241454 139241454 C G REPS1 Splice_Site p.X476_splice 0.31 TCGA-C5-A1BN-01 6 26205164 26205164 C G HIST1H4E Missense_Mutation p.L98V 0.80 deleterious(0.01) benign(0.261) TCGA-C5-A1BN-01 6 27776279 27776279 C A HIST1H2AI Missense_Mutation p.L98M 0.39 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-C5-A1BN-01 6 29408113 29408113 C T OR10C1 Silent p.G107G 0.28 TCGA-C5-A1BN-01 7 151962139 151962139 C T KMT2C Missense_Mutation p.V390M 0.03 probably_damaging(1) TCGA-C5-A1BN-01 7 66460413 66460413 T C SBDS 5'UTR 0.09 TCGA-C5-A1BN-01 8 104973324 104973324 T C RIMS2 Silent p.S911S 0.22 TCGA-C5-A1BN-01 8 26721793 26721793 C A ADRA1A Missense_Mutation p.V232L 0.28 tolerated(0.46) probably_damaging(0.934) TCGA-C5-A1BN-01 8 68658352 68658352 C T CPA6 Missense_Mutation p.G5R 0.22 tolerated_low_confidence(0.14) benign(0.001) TCGA-C5-A1BN-01 8 7308358 7308358 A G SPAG11B Silent p.F93F 0.27 TCGA-C5-A1BN-01 8 79598747 79598747 G A ZC2HC1A Missense_Mutation p.E86K 0.50 deleterious(0.01) possibly_damaging(0.887) TCGA-C5-A1BN-01 9 127570102 127570102 C T OLFML2A Missense_Mutation p.P404L 0.37 tolerated(0.14) possibly_damaging(0.908) TCGA-C5-A1BN-01 9 130476435 130476435 C T PTRH1 Missense_Mutation p.D197N 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-C5-A1BN-01 9 136277936 136277936 G A REXO4 Silent p.S226S 0.35 TCGA-C5-A1BN-01 9 90220066 90220066 C T DAPK1 Missense_Mutation p.T87M 0.36 tolerated(0.11) benign(0.055) TCGA-C5-A1BN-01 X 105451166 105451166 A C MUM1L1 Silent p.R581R 0.24 TCGA-C5-A1BN-01 X 132161143 132161143 G T USP26 Nonsense_Mutation p.S369* 0.36 TCGA-C5-A1BN-01 X 141291726 141291726 G C MAGEC2 Silent p.S16S 0.39 TCGA-C5-A1BN-01 X 19947987 19947987 C G CXorf23 Missense_Mutation p.Q645H 0.31 deleterious(0) probably_damaging(0.997) TCGA-C5-A1BN-01 X 47518369 47518369 C T UXT 5'UTR 0.41 TCGA-C5-A1BN-01 X 51149855 51149855 G A CXorf67 5'UTR 0.29 TCGA-C5-A1BN-01 X 75649151 75649151 C A MAGEE1 Silent p.A276A 0.35 TCGA-C5-A1BN-01 X 76938875 76938875 C G ATRX Missense_Mutation p.E625Q 0.37 possibly_damaging(0.464) TCGA-C5-A1BN-01 X 83129330 83129330 C G CYLC1 Missense_Mutation p.I538M 0.28 tolerated(0.21) possibly_damaging(0.891) TCGA-C5-A1M5-01 10 105372776 105372776 G A SH3PXD2A Silent p.A336A 0.46 TCGA-C5-A1M5-01 10 132965127 132965127 C G TCERG1L Missense_Mutation p.R293P 0.08 deleterious(0) possibly_damaging(0.769) TCGA-C5-A1M5-01 10 134219456 134219456 C T PWWP2B Silent p.D484D 0.05 TCGA-C5-A1M5-01 10 43692548 43692548 C T RASGEF1A Splice_Site p.X409_splice 0.40 TCGA-C5-A1M5-01 10 70748636 70748636 G A KIAA1279 Silent p.A16A 0.05 TCGA-C5-A1M5-01 10 7745454 7745454 C T ITIH2 Silent p.F19F 0.08 TCGA-C5-A1M5-01 11 104034556 104034556 G A PDGFD Missense_Mutation p.R34C 0.09 deleterious(0) possibly_damaging(0.847) TCGA-C5-A1M5-01 11 63670179 63670179 C T MARK2 Silent p.A447A 0.15 TCGA-C5-A1M5-01 11 6651131 6651131 C T DCHS1 Missense_Mutation p.V1603M 0.30 deleterious(0.01) possibly_damaging(0.61) TCGA-C5-A1M5-01 12 26592082 26592082 C A ITPR2 Missense_Mutation p.M2207I 0.06 deleterious(0) possibly_damaging(0.539) TCGA-C5-A1M5-01 12 49994424 49994424 C T FAM186B Silent p.E333E 0.39 TCGA-C5-A1M5-01 12 56575341 56575341 C A SMARCC2 Missense_Mutation p.G294V 0.10 tolerated(0.06) probably_damaging(0.953) TCGA-C5-A1M5-01 12 67692752 67692752 C T CAND1 Missense_Mutation p.H293Y 0.09 tolerated(0.34) benign(0.003) TCGA-C5-A1M5-01 12 76778126 76778126 G A OSBPL8 Missense_Mutation p.S513F 0.11 deleterious(0) probably_damaging(1) TCGA-C5-A1M5-01 12 85695254 85695254 C T ALX1 3'UTR 0.06 TCGA-C5-A1M5-01 13 28367727 28367727 G A GSX1 Missense_Mutation p.S146N 0.23 tolerated(0.78) benign(0.395) TCGA-C5-A1M5-01 13 36396959 36396959 G A DCLK1 Silent p.D487D 0.42 TCGA-C5-A1M5-01 13 98116801 98116801 A T RAP2A 3'UTR 0.18 TCGA-C5-A1M5-01 15 55930779 55930779 C T PRTG Missense_Mutation p.S807N 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-C5-A1M5-01 15 74315539 74315539 C T PML Missense_Mutation p.R325C 0.27 deleterious(0) probably_damaging(1) TCGA-C5-A1M5-01 15 90162963 90162963 G A TICRR Missense_Mutation p.R1015Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M5-01 16 24358139 24358139 G A CACNG3 Splice_Site p.X99_splice 0.42 TCGA-C5-A1M5-01 16 30748554 30748554 G A SRCAP Missense_Mutation p.R2398H 0.45 probably_damaging(0.964) TCGA-C5-A1M5-01 17 66887638 66887638 C A ABCA8 Missense_Mutation p.D1006Y 0.17 deleterious(0) possibly_damaging(0.873) TCGA-C5-A1M5-01 17 6716198 6716198 C T TEKT1 Silent p.L268L 0.09 TCGA-C5-A1M5-01 17 74714798 74714800 CAG - JMJD6 Intron 0.35 TCGA-C5-A1M5-01 19 1004821 1004821 G A GRIN3B Missense_Mutation p.A441T 0.04 tolerated(0.07) benign(0.385) TCGA-C5-A1M5-01 19 4511413 4511413 C T PLIN4 Silent p.T839T 0.38 TCGA-C5-A1M5-01 19 56133037 56133037 C T ZNF784 3'UTR 0.44 TCGA-C5-A1M5-01 19 56701805 56701805 C G ZSCAN5B Silent p.L293L 0.39 TCGA-C5-A1M5-01 19 56703294 56703294 C G ZSCAN5B Missense_Mutation p.Q171H 0.33 tolerated(0.09) benign(0) TCGA-C5-A1M5-01 19 9076980 9076980 G A MUC16 Missense_Mutation p.T3489I 0.31 unknown(0) TCGA-C5-A1M5-01 1 115829246 115829246 C T NGF Silent p.A57A 0.29 TCGA-C5-A1M5-01 1 150280628 150280628 G A MRPS21 Missense_Mutation p.R77Q 0.10 benign(0.012) TCGA-C5-A1M5-01 1 156617459 156617459 C T BCAN Missense_Mutation p.S209L 0.41 deleterious(0) benign(0.082) TCGA-C5-A1M5-01 1 180974431 180974431 G C STX6 Missense_Mutation p.I68M 0.12 deleterious(0) probably_damaging(0.957) TCGA-C5-A1M5-01 1 181745324 181745324 G A CACNA1E Missense_Mutation p.E1743K 0.13 deleterious(0) benign(0.305) TCGA-C5-A1M5-01 1 223396682 223396682 C T SUSD4 Silent p.E451E 0.13 TCGA-C5-A1M5-01 1 241798676 241798676 G A CHML Silent p.F131F 0.03 TCGA-C5-A1M5-01 1 36372633 36372633 G A AGO1 Missense_Mutation p.V499M 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-C5-A1M5-01 1 3775314 3775314 C T DFFB Silent p.Y49Y 0.11 TCGA-C5-A1M5-01 1 43223463 43223464 - C LEPRE1 Frame_Shift_Ins p.R359Pfs*2 0.34 TCGA-C5-A1M5-01 1 45797852 45797852 G A MUTYH Missense_Mutation p.R304W 0.08 tolerated(0.07) benign(0.099) TCGA-C5-A1M5-01 1 48703474 48703474 C T SLC5A9 Silent p.T497T 0.08 TCGA-C5-A1M5-01 1 93167736 93167736 G C EVI5 Missense_Mutation p.Q245E 0.04 deleterious(0) possibly_damaging(0.838) TCGA-C5-A1M5-01 20 16485186 16485186 G A KIF16B Missense_Mutation p.S336L 0.08 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M5-01 20 17596583 17596583 G A RRBP1 Silent p.A880A 0.15 TCGA-C5-A1M5-01 20 34263075 34263075 G A NFS1 Silent p.A280A 0.39 TCGA-C5-A1M5-01 21 44488638 44488638 G A CBS Silent p.F99F 0.37 TCGA-C5-A1M5-01 22 30776081 30776081 C T RNF215 Silent p.A326A 0.39 TCGA-C5-A1M5-01 22 44234843 44234843 G A SULT4A1 Silent p.L138L 0.30 TCGA-C5-A1M5-01 2 113539283 113539283 C T IL1A Missense_Mutation p.V73I 0.26 tolerated(0.11) benign(0.002) TCGA-C5-A1M5-01 2 128324316 128324316 C T MYO7B Silent p.G128G 0.28 TCGA-C5-A1M5-01 2 179343117 179343117 A G FKBP7 Missense_Mutation p.I37T 0.35 tolerated(0.11) possibly_damaging(0.904) TCGA-C5-A1M5-01 2 179483051 179483051 C T TTN Missense_Mutation p.E15712K 0.11 TCGA-C5-A1M5-01 2 210557806 210557806 G A MAP2 Nonsense_Mutation p.W304* 0.07 TCGA-C5-A1M5-01 2 74043169 74043169 C T C2orf78 Missense_Mutation p.R607W 0.08 deleterious(0.02) probably_damaging(0.989) TCGA-C5-A1M5-01 2 80529638 80529638 A G LRRTM1 Missense_Mutation p.I436T 0.29 deleterious(0.01) probably_damaging(0.966) TCGA-C5-A1M5-01 2 85554084 85554084 A C TGOLN2 Silent p.P257P 0.36 TCGA-C5-A1M5-01 3 100373824 100373824 G C GPR128 Missense_Mutation p.D509H 0.04 tolerated(0.07) possibly_damaging(0.468) TCGA-C5-A1M5-01 3 112357354 112357354 G A CCDC80 Missense_Mutation p.R467C 0.08 deleterious(0) probably_damaging(0.925) TCGA-C5-A1M5-01 3 113379802 113379802 C T KIAA2018 Missense_Mutation p.E243K 0.19 benign(0.034) TCGA-C5-A1M5-01 3 120876455 120876455 C G STXBP5L Missense_Mutation p.F286L 0.06 tolerated(0.76) benign(0.292) TCGA-C5-A1M5-01 3 130720086 130720086 C T ATP2C1 Silent p.L918L 0.07 TCGA-C5-A1M5-01 3 180666162 180666162 G C FXR1 Missense_Mutation p.D100H 0.16 deleterious(0) probably_damaging(0.918) TCGA-C5-A1M5-01 3 28476663 28476663 G A ZCWPW2 Missense_Mutation p.G132E 0.34 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M5-01 3 38022265 38022265 G A CTDSPL Silent p.T246T 0.42 TCGA-C5-A1M5-01 3 49758728 49758728 C A RNF123 Nonsense_Mutation p.S1312* 0.12 TCGA-C5-A1M5-01 3 62556598 62556598 G A CADPS Silent p.I531I 0.14 TCGA-C5-A1M5-01 3 98109725 98109725 C T OR5K3 Silent p.C72C 0.05 TCGA-C5-A1M5-01 4 140281653 140281653 G A NAA15 Splice_Site p.X471_splice 0.08 TCGA-C5-A1M5-01 4 52883762 52883762 G A LRRC66 Silent p.F6F 0.09 TCGA-C5-A1M5-01 4 95155109 95155109 G A SMARCAD1 Missense_Mutation p.E125K 0.10 tolerated_low_confidence(0.24) benign(0.053) TCGA-C5-A1M5-01 5 115783191 115783192 - T SEMA6A Frame_Shift_Ins p.N737Kfs*8 0.38 TCGA-C5-A1M5-01 5 13786454 13786454 G A DNAH5 Missense_Mutation p.T2885I 0.12 possibly_damaging(0.507) TCGA-C5-A1M5-01 5 140590433 140590433 C T PCDHB12 Missense_Mutation p.R652C 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-C5-A1M5-01 5 156721789 156721789 C T CYFIP2 Intron 0.10 TCGA-C5-A1M5-01 5 167645602 167645602 C T TENM2 Missense_Mutation p.A1569V 0.14 tolerated(0.07) possibly_damaging(0.604) TCGA-C5-A1M5-01 5 173491307 173491307 G A NSG2 Missense_Mutation p.A68T 0.26 tolerated(0.11) possibly_damaging(0.747) TCGA-C5-A1M5-01 5 178418890 178418890 G A GRM6 Silent p.F233F 0.20 TCGA-C5-A1M5-01 6 170594675 170594675 C G DLL1 Missense_Mutation p.G282R 0.39 deleterious(0) probably_damaging(1) TCGA-C5-A1M5-01 7 100675495 100675495 A G MUC17 Silent p.S266S 0.41 TCGA-C5-A1M5-01 7 142569581 142569581 C T TRPV6 Missense_Mutation p.R686Q 0.21 tolerated(0.07) probably_damaging(0.957) TCGA-C5-A1M5-01 7 14758207 14758207 C T DGKB Silent p.L142L 0.17 TCGA-C5-A1M5-01 7 151962241 151962241 G A KMT2C Nonsense_Mutation p.Q356* 0.04 TCGA-C5-A1M5-01 7 44009379 44009379 C T POLR2J4 Intron 0.47 TCGA-C5-A1M5-01 8 134108511 134108511 G A TG Missense_Mutation p.R2489H 0.26 tolerated(0.06) benign(0.035) TCGA-C5-A1M5-01 8 26267979 26267979 G A BNIP3L 3'UTR 0.26 TCGA-C5-A1M5-01 8 63976819 63976819 G A TTPA Silent p.F203F 0.32 TCGA-C5-A1M5-01 9 115336810 115336810 G T KIAA1958 Missense_Mutation p.E150D 0.38 deleterious(0.01) possibly_damaging(0.739) TCGA-C5-A1M5-01 9 35560823 35560823 C T RUSC2 Nonsense_Mutation p.Q1396* 0.45 TCGA-C5-A1M5-01 X 119509335 119509335 G A ATP1B4 Missense_Mutation p.R224H 0.22 deleterious(0) probably_damaging(1) TCGA-C5-A1M5-01 X 127186109 127186109 G C ACTRT1 Missense_Mutation p.S26C 0.05 deleterious(0.05) benign(0.001) TCGA-C5-A1M5-01 X 136649872 136649872 G A ZIC3 Missense_Mutation p.R341H 0.23 deleterious(0) probably_damaging(0.963) TCGA-C5-A1M5-01 X 22291584 22291584 C T ZNF645 Missense_Mutation p.P159L 0.04 tolerated(0.15) benign(0.207) TCGA-C5-A1M6-01 10 101835718 101835718 G C CPN1 Missense_Mutation p.H124D 0.40 deleterious(0) probably_damaging(1) TCGA-C5-A1M6-01 10 104162953 104162953 C T PSD 3'UTR 0.56 TCGA-C5-A1M6-01 10 111651526 111651526 G C XPNPEP1 Silent p.L123L 0.07 TCGA-C5-A1M6-01 10 135165615 135165615 G A PRAP1 Missense_Mutation p.R78Q 0.36 tolerated(0.83) benign(0.003) TCGA-C5-A1M6-01 10 15649714 15649714 T A ITGA8 Nonsense_Mutation p.K576* 0.38 TCGA-C5-A1M6-01 10 27382726 27382726 G A ANKRD26 Missense_Mutation p.T82M 0.48 deleterious(0) probably_damaging(1) TCGA-C5-A1M6-01 10 46265066 46265066 G C FAM21C Missense_Mutation p.S680T 0.10 deleterious(0) probably_damaging(0.998) TCGA-C5-A1M6-01 10 49459669 49459669 C A FRMPD2 Nonsense_Mutation p.E31* 0.39 TCGA-C5-A1M6-01 11 107943062 107943062 T G CUL5 Nonsense_Mutation p.L293* 0.53 TCGA-C5-A1M6-01 11 34119382 34119382 C G CAPRIN1 Intron 0.13 TCGA-C5-A1M6-01 11 57569478 57569478 C T CTNND1 Silent p.I410I 0.24 TCGA-C5-A1M6-01 11 61404313 61404313 G A RPLP0P2 RNA 0.35 TCGA-C5-A1M6-01 11 61404631 61404631 G A RPLP0P2 RNA 0.50 TCGA-C5-A1M6-01 11 62601346 62601346 G C WDR74 Nonsense_Mutation p.S280* 0.60 TCGA-C5-A1M6-01 11 73785628 73785628 C T C2CD3 Missense_Mutation p.G1541R 0.56 tolerated(1) benign(0.109) TCGA-C5-A1M6-01 12 105151050 105151050 G C CHST11 Missense_Mutation p.L176F 0.12 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M6-01 12 105538628 105538628 T A KIAA1033 Missense_Mutation p.L771H 0.34 deleterious(0) probably_damaging(1) TCGA-C5-A1M6-01 12 46582696 46582696 G A SLC38A1 3'UTR 0.63 TCGA-C5-A1M6-01 12 49993786 49993786 C TT FAM186B Frame_Shift_Ins p.R546Kfs*54 0.12 TCGA-C5-A1M6-01 12 50348450 50348450 C T AQP2 Missense_Mutation p.S188F 0.11 deleterious(0) probably_damaging(0.998) TCGA-C5-A1M6-01 12 51442848 51442848 G A LETMD1 Missense_Mutation p.D52N 0.73 tolerated(0.45) benign(0.002) TCGA-C5-A1M6-01 12 52843273 52843273 C G KRT6B Missense_Mutation p.E353Q 0.28 deleterious(0) probably_damaging(0.992) TCGA-C5-A1M6-01 12 56993982 56993982 C G BAZ2A Intron 0.51 TCGA-C5-A1M6-01 12 6776900 6776900 C A ZNF384 Nonsense_Mutation p.E572* 0.24 TCGA-C5-A1M6-01 12 8195264 8195264 G A FOXJ2 Missense_Mutation p.R115Q 0.59 deleterious(0) probably_damaging(0.997) TCGA-C5-A1M6-01 12 9085316 9085316 C G PHC1 Silent p.L421L 0.09 TCGA-C5-A1M6-01 13 113975993 113975993 C G LAMP1 Missense_Mutation p.F355L 0.33 deleterious(0) probably_damaging(0.934) TCGA-C5-A1M6-01 13 22246199 22246199 G C FGF9 Missense_Mutation p.A50P 0.27 tolerated(0.16) benign(0.244) TCGA-C5-A1M6-01 14 102466695 102466695 C T DYNC1H1 Nonsense_Mutation p.Q1345* 0.50 TCGA-C5-A1M6-01 14 105521759 105521759 C A GPR132 5'UTR 0.18 TCGA-C5-A1M6-01 14 24545480 24545480 G A CPNE6 Silent p.Q349Q 0.10 TCGA-C5-A1M6-01 14 24608392 24608392 C T EMC9 Missense_Mutation p.D152N 0.12 tolerated(0.07) benign(0.132) TCGA-C5-A1M6-01 14 58711623 58711623 C G PSMA3 5'UTR 0.18 TCGA-C5-A1M6-01 14 75151318 75151318 G T AREL1 Missense_Mutation p.R28S 0.20 tolerated_low_confidence(0.31) probably_damaging(0.987) TCGA-C5-A1M6-01 14 80997191 80997191 C G CEP128 Missense_Mutation p.E974Q 0.17 deleterious(0.02) benign(0.097) TCGA-C5-A1M6-01 15 38243557 38243557 G C TMCO5A 3'UTR 0.30 TCGA-C5-A1M6-01 15 43873496 43873496 C G PPIP5K1 Missense_Mutation p.E290Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-C5-A1M6-01 15 62942299 62942299 C T TLN2 Silent p.L51L 0.24 TCGA-C5-A1M6-01 15 79217722 79217722 C G CTSH Missense_Mutation p.E254Q 0.48 tolerated(0.51) possibly_damaging(0.836) TCGA-C5-A1M6-01 16 1793357 1793357 G A MAPK8IP3 Silent p.L208L 0.69 TCGA-C5-A1M6-01 16 2070650 2070650 C T NPW 3'UTR 0.67 TCGA-C5-A1M6-01 16 23573950 23573950 G A UBFD1 Missense_Mutation p.R212H 0.60 tolerated(0.21) benign(0.001) TCGA-C5-A1M6-01 16 30721367 30721367 C G SRCAP Missense_Mutation p.S351C 0.09 unknown(0) TCGA-C5-A1M6-01 16 4322782 4322782 C T TFAP4 5'UTR 0.26 TCGA-C5-A1M6-01 16 57937822 57937830 TGCTGTCCA - CNGB1 In_Frame_Del p.M897_S899del 0.24 TCGA-C5-A1M6-01 16 67179511 67179511 G A C16orf70 Silent p.E363E 0.10 TCGA-C5-A1M6-01 16 67902253 67902253 C T NUTF2 Missense_Mutation p.S37L 0.18 deleterious(0) probably_damaging(0.954) TCGA-C5-A1M6-01 16 67902436 67902436 C T NUTF2 Silent p.I68I 0.17 TCGA-C5-A1M6-01 16 85946813 85946813 C T IRF8 Missense_Mutation p.P175L 0.08 tolerated(0.15) benign(0.125) TCGA-C5-A1M6-01 16 90020648 90020648 C G DEF8 Intron 0.23 TCGA-C5-A1M6-01 17 10400712 10400712 G C MYH1 Missense_Mutation p.Q1475E 0.22 deleterious(0.04) possibly_damaging(0.721) TCGA-C5-A1M6-01 17 17772740 17772740 G A TOM1L2 Silent p.L275L 0.50 TCGA-C5-A1M6-01 17 29314963 29314963 C G RNF135 Missense_Mutation p.A173G 0.38 tolerated(0.2) benign(0.014) TCGA-C5-A1M6-01 17 35804840 35804840 T G TADA2A Missense_Mutation p.F192V 0.46 deleterious(0) possibly_damaging(0.904) TCGA-C5-A1M6-01 17 42427876 42427876 C T GRN Missense_Mutation p.R177C 0.20 deleterious(0) benign(0.159) TCGA-C5-A1M6-01 17 48761448 48761448 C T ABCC3 Nonsense_Mutation p.Q1365* 0.11 TCGA-C5-A1M6-01 17 49054561 49054561 G C SPAG9 Missense_Mutation p.S1144C 0.29 deleterious(0) probably_damaging(0.996) TCGA-C5-A1M6-01 17 57958298 57958298 G C TUBD1 Nonsense_Mutation p.S165* 0.41 TCGA-C5-A1M6-01 17 59557640 59557640 G C TBX4 Missense_Mutation p.Q327H 0.39 tolerated(0.14) probably_damaging(0.991) TCGA-C5-A1M6-01 17 6919820 6919820 G A C17orf49 Silent p.Q75Q 0.51 TCGA-C5-A1M6-01 17 73871532 73871532 C G TRIM47 Missense_Mutation p.E409Q 0.21 tolerated(0.11) benign(0.066) TCGA-C5-A1M6-01 17 7578382 7578382 G C TP53 Nonsense_Mutation p.S183* 0.55 TCGA-C5-A1M6-01 17 7690336 7690336 C T DNAH2 Silent p.I2196I 0.25 TCGA-C5-A1M6-01 18 18562727 18562727 G A ROCK1 Silent p.F852F 0.28 TCGA-C5-A1M6-01 18 19996994 19996994 A T CTAGE1 Missense_Mutation p.L261M 0.06 tolerated(0.05) probably_damaging(0.934) TCGA-C5-A1M6-01 19 12125757 12125757 C G ZNF433 Missense_Mutation p.G642A 0.67 tolerated(0.06) probably_damaging(0.926) TCGA-C5-A1M6-01 19 1278781 1278781 G C C19orf24 3'UTR 0.26 TCGA-C5-A1M6-01 19 16045204 16045204 G A CYP4F11 Silent p.S5S 0.25 TCGA-C5-A1M6-01 19 1827430 1827430 C T REXO1 Missense_Mutation p.R453Q 0.60 tolerated(0.51) benign(0.003) TCGA-C5-A1M6-01 19 19166203 19166203 C A ARMC6 Missense_Mutation p.Q385K 0.19 tolerated(0.19) benign(0.097) TCGA-C5-A1M6-01 19 31770291 31770291 G A TSHZ3 Silent p.L136L 0.55 TCGA-C5-A1M6-01 19 33096837 33096837 C T ANKRD27 Silent p.S799S 0.19 TCGA-C5-A1M6-01 19 38200684 38200684 G C ZNF607 Missense_Mutation p.H17D 0.22 tolerated(0.06) benign(0.05) TCGA-C5-A1M6-01 19 38200719 38200719 G C ZNF607 Nonsense_Mutation p.S5* 0.24 TCGA-C5-A1M6-01 19 3977937 3977937 G A EEF2 Silent p.I649I 0.10 TCGA-C5-A1M6-01 19 41197893 41197893 C A ADCK4 3'UTR 0.30 TCGA-C5-A1M6-01 19 43968495 43968495 C T LYPD3 Missense_Mutation p.V65M 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A1M6-01 19 44501188 44501188 C T ZNF155 Silent p.V404V 0.50 TCGA-C5-A1M6-01 19 44740134 44740134 G A ZNF227 Silent p.E517E 0.22 TCGA-C5-A1M6-01 19 45873500 45873500 G A ERCC2 Intron 0.19 TCGA-C5-A1M6-01 19 49248480 49248480 C T IZUMO1 Missense_Mutation p.D101N 0.43 tolerated(0.34) benign(0.079) TCGA-C5-A1M6-01 19 51228562 51228562 C T CLEC11A Silent p.P270P 0.55 TCGA-C5-A1M6-01 19 56244845 56244845 G A NLRP9 Missense_Mutation p.H118Y 0.56 tolerated(1) benign(0.116) TCGA-C5-A1M6-01 19 58265347 58265347 G C ZNF776 Missense_Mutation p.Q283H 0.08 tolerated(0.13) benign(0.187) TCGA-C5-A1M6-01 19 9801621 9801621 G A ZNF812 Silent p.I186I 0.39 TCGA-C5-A1M6-01 1 101704600 101704600 C T S1PR1 Silent p.V20V 0.15 TCGA-C5-A1M6-01 1 12321050 12321050 G A VPS13D Missense_Mutation p.A420T 0.53 benign(0) TCGA-C5-A1M6-01 1 146736155 146736155 C T CHD1L Silent p.L217L 0.43 TCGA-C5-A1M6-01 1 160262345 160262345 G A COPA Silent p.Y972Y 0.24 TCGA-C5-A1M6-01 1 16767245 16767245 C T NECAP2 5'UTR 0.16 TCGA-C5-A1M6-01 1 16890647 16890647 C T NBPF1 Missense_Mutation p.E1071K 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.717) TCGA-C5-A1M6-01 1 169525907 169525907 G C F5 Missense_Mutation p.S310C 0.43 deleterious(0) probably_damaging(0.994) TCGA-C5-A1M6-01 1 170705270 170705270 G C PRRX1 Silent p.L227L 0.43 TCGA-C5-A1M6-01 1 173840150 173840150 G C ZBTB37 Missense_Mutation p.E263Q 0.36 tolerated(0.22) benign(0.048) TCGA-C5-A1M6-01 1 173840188 173840188 G T ZBTB37 Silent p.V275V 0.40 TCGA-C5-A1M6-01 1 177250575 177250575 G C BRINP2 Missense_Mutation p.E755Q 0.28 deleterious(0) probably_damaging(0.994) TCGA-C5-A1M6-01 1 183273865 183273865 G A NMNAT2 Intron 0.07 TCGA-C5-A1M6-01 1 220804416 220804416 G C MARK1 Missense_Mutation p.E317Q 0.24 tolerated(0.06) benign(0.04) TCGA-C5-A1M6-01 1 226252059 226252059 C T H3F3A Missense_Mutation p.R3C 0.24 deleterious_low_confidence(0.01) benign(0.002) TCGA-C5-A1M6-01 1 247588394 247588394 G A NLRP3 Missense_Mutation p.R550H 0.42 tolerated(0.3) benign(0) TCGA-C5-A1M6-01 1 26508395 26508395 G T CNKSR1 Missense_Mutation p.R147L 0.05 tolerated(0.69) possibly_damaging(0.452) TCGA-C5-A1M6-01 1 28823241 28823241 G A PHACTR4 3'UTR 0.40 TCGA-C5-A1M6-01 1 28861792 28861792 G A RCC1 Silent p.L218L 0.45 TCGA-C5-A1M6-01 1 32620238 32620245 GAACAATG AACAAAT KPNA6 Frame_Shift_Del p.N19Tfs*4 0.30 TCGA-C5-A1M6-01 1 40726594 40726594 C G ZMPSTE24 Silent p.L69L 0.23 TCGA-C5-A1M6-01 1 41481601 41481601 G C SLFNL1 3'UTR 0.34 TCGA-C5-A1M6-01 1 43650992 43650992 G A WDR65 Missense_Mutation p.E312K 0.25 tolerated(0.1) benign(0.06) TCGA-C5-A1M6-01 1 43651019 43651019 G C WDR65 Missense_Mutation p.E321Q 0.27 deleterious(0.04) probably_damaging(0.975) TCGA-C5-A1M6-01 1 45363062 45363062 C T EIF2B3 Silent p.L207L 0.38 TCGA-C5-A1M6-01 1 65305416 65305416 C T JAK1 Silent p.Q904Q 0.22 TCGA-C5-A1M6-01 20 30310075 30310075 C G BCL2L1 5'UTR 0.38 TCGA-C5-A1M6-01 20 37117221 37117221 C T RALGAPB Missense_Mutation p.S49L 0.04 tolerated(0.11) possibly_damaging(0.781) TCGA-C5-A1M6-01 20 50407563 50407563 G A SALL4 Nonsense_Mutation p.Q487* 0.20 TCGA-C5-A1M6-01 21 32598165 32598165 G C TIAM1 Silent p.L562L 0.30 TCGA-C5-A1M6-01 22 32495249 32495249 G A SLC5A1 Missense_Mutation p.D454N 0.14 tolerated(0.15) benign(0.155) TCGA-C5-A1M6-01 22 42537541 42537541 C A NDUFA6-AS1 3'Flank 0.83 TCGA-C5-A1M6-01 22 43565562 43565562 C G TTLL12 Missense_Mutation p.E530Q 0.67 tolerated(0.14) benign(0.284) TCGA-C5-A1M6-01 2 108881768 108881768 G A SULT1C3 Silent p.K292K 0.49 TCGA-C5-A1M6-01 2 136546079 136546079 C T LCT Missense_Mutation p.E1867K 0.04 tolerated(0.89) benign(0.002) TCGA-C5-A1M6-01 2 163002156 163002156 C G GCG Missense_Mutation p.E96Q 0.23 deleterious(0.02) possibly_damaging(0.757) TCGA-C5-A1M6-01 2 202073970 202073970 C T CASP10 Missense_Mutation p.S367L 0.10 deleterious(0.01) possibly_damaging(0.491) TCGA-C5-A1M6-01 2 26424052 26424052 C A HADHA Missense_Mutation p.S453I 0.06 tolerated(0.08) benign(0.392) TCGA-C5-A1M6-01 2 37349711 37349711 C T EIF2AK2 Silent p.E335E 0.06 TCGA-C5-A1M6-01 2 37455204 37455204 C T CEBPZ Missense_Mutation p.E378K 0.07 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M6-01 2 44123818 44123818 C T LRPPRC Silent p.P1285P 0.21 TCGA-C5-A1M6-01 2 44190816 44190816 C A LRPPRC Nonsense_Mutation p.E467* 0.17 TCGA-C5-A1M6-01 2 84806723 84806723 G A DNAH6 Missense_Mutation p.E717K 0.19 tolerated(0.4) benign(0.004) TCGA-C5-A1M6-01 2 84806735 84806735 G A DNAH6 Missense_Mutation p.E721K 0.19 tolerated(0.45) benign(0.01) TCGA-C5-A1M6-01 2 99439361 99439361 C G KIAA1211L Missense_Mutation p.E459Q 0.13 deleterious(0.05) possibly_damaging(0.607) TCGA-C5-A1M6-01 3 108288401 108288401 G A KIAA1524 Silent p.L316L 0.07 TCGA-C5-A1M6-01 3 113376032 113376032 C G KIAA2018 Missense_Mutation p.E1499D 0.07 benign(0.009) TCGA-C5-A1M6-01 3 113789495 113789495 C T QTRTD1 Missense_Mutation p.A131V 0.05 deleterious(0.02) benign(0.037) TCGA-C5-A1M6-01 3 119344010 119344010 G C PLA1A Missense_Mutation p.R351T 0.14 tolerated(0.07) benign(0.05) TCGA-C5-A1M6-01 3 121414503 121414503 G C GOLGB1 Missense_Mutation p.L1623V 0.30 probably_damaging(0.999) TCGA-C5-A1M6-01 3 124951197 124951197 C G ZNF148 Missense_Mutation p.Q791H 0.15 deleterious(0) possibly_damaging(0.77) TCGA-C5-A1M6-01 3 129284294 129284294 G A PLXND1 Silent p.L1470L 0.11 TCGA-C5-A1M6-01 3 12983327 12983327 G A IQSEC1 Missense_Mutation p.S35F 0.76 tolerated_low_confidence(0.24) probably_damaging(0.961) TCGA-C5-A1M6-01 3 16345057 16345057 G T OXNAD1 Missense_Mutation p.E309D 0.37 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M6-01 3 167293737 167293737 G A WDR49 Missense_Mutation p.T152I 0.12 tolerated(0.08) possibly_damaging(0.632) TCGA-C5-A1M6-01 3 191047505 191047505 C G CCDC50 Silent p.V14V 0.21 TCGA-C5-A1M6-01 3 193380646 193380646 G A OPA1 Silent p.K834K 0.12 TCGA-C5-A1M6-01 3 195022341 195022341 G C ACAP2 Missense_Mutation p.S453C 0.14 deleterious(0) probably_damaging(1) TCGA-C5-A1M6-01 3 42132994 42132994 C T TRAK1 Silent p.V11V 0.61 TCGA-C5-A1M6-01 3 46008968 46008968 C T FYCO1 Missense_Mutation p.E620K 0.36 tolerated(0.36) benign(0.129) TCGA-C5-A1M6-01 3 50231257 50231257 G A GNAT1 Missense_Mutation p.R174Q 0.84 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A1M6-01 3 51993277 51993277 G A PCBP4 Missense_Mutation p.A223V 0.06 tolerated(0.17) benign(0.022) TCGA-C5-A1M6-01 3 5251877 5251877 C G EDEM1 Missense_Mutation p.F509L 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-C5-A1M6-01 3 52651372 52651372 A T PBRM1 Missense_Mutation p.I575N 0.56 deleterious(0) probably_damaging(0.921) TCGA-C5-A1M6-01 3 55504316 55504316 C T WNT5A Missense_Mutation p.G316D 0.09 deleterious(0) probably_damaging(1) TCGA-C5-A1M6-01 3 57108134 57108134 G A SPATA12 Missense_Mutation p.E138K 0.65 tolerated_low_confidence(0.58) possibly_damaging(0.486) TCGA-C5-A1M6-01 3 97596165 97596165 G C CRYBG3 Missense_Mutation p.E95Q 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.59) TCGA-C5-A1M6-01 4 122724120 122724120 G C EXOSC9 Missense_Mutation p.R111T 0.10 deleterious(0.01) possibly_damaging(0.769) TCGA-C5-A1M6-01 4 184367811 184367811 C T CDKN2AIP Missense_Mutation p.S325L 0.43 deleterious(0.01) unknown(0) TCGA-C5-A1M6-01 4 247375 247375 C T ZNF876P RNA 0.23 TCGA-C5-A1M6-01 4 47565612 47565612 G A ATP10D Missense_Mutation p.E895K 0.27 deleterious(0) possibly_damaging(0.656) TCGA-C5-A1M6-01 4 56212638 56212638 C G SRD5A3 Missense_Mutation p.I45M 0.44 deleterious(0.01) benign(0.043) TCGA-C5-A1M6-01 4 69513036 69513036 C T UGT2B15 Missense_Mutation p.R460Q 0.33 tolerated(0.06) possibly_damaging(0.477) TCGA-C5-A1M6-01 4 82088333 82088333 G A PRKG2 Silent p.I298I 0.19 TCGA-C5-A1M6-01 5 10417496 10417496 C G MARCH6 Missense_Mutation p.P755A 0.19 deleterious(0.01) possibly_damaging(0.831) TCGA-C5-A1M6-01 5 131977957 131977957 T G RAD50 Silent p.S1280S 0.07 TCGA-C5-A1M6-01 5 135513103 135513103 C T SMAD5 Nonsense_Mutation p.Q444* 0.16 TCGA-C5-A1M6-01 5 135513158 135513158 C T SMAD5 Missense_Mutation p.S462F 0.14 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M6-01 5 140476487 140476487 T C PCDHB2 Missense_Mutation p.F705L 0.24 tolerated_low_confidence(0.46) benign(0.001) TCGA-C5-A1M6-01 5 150497334 150497334 G A ANXA6 Silent p.L501L 0.29 TCGA-C5-A1M6-01 5 168189607 168189608 - CAATCGTGC SLIT3 In_Frame_Ins p.G513_I515dup 0.15 TCGA-C5-A1M6-01 5 43492321 43492321 C T C5orf34 Missense_Mutation p.E526K 0.05 deleterious(0.04) benign(0.377) TCGA-C5-A1M6-01 5 66427716 66427716 C T MAST4 Missense_Mutation p.T677M 0.26 probably_damaging(0.999) TCGA-C5-A1M6-01 5 71654177 71654177 C G PTCD2 Missense_Mutation p.H364D 0.07 tolerated(0.32) benign(0.003) TCGA-C5-A1M6-01 6 138583935 138583935 G A KIAA1244 Missense_Mutation p.E439K 0.26 tolerated(0.11) benign(0.081) TCGA-C5-A1M6-01 6 30043424 30043424 G C RNF39 Missense_Mutation p.S48C 0.09 deleterious_low_confidence(0.01) benign(0.423) TCGA-C5-A1M6-01 6 36452488 36452488 C T KCTD20 Intron 0.22 TCGA-C5-A1M6-01 6 38998252 38998252 T C DNAH8 3'UTR 0.95 TCGA-C5-A1M6-01 6 7580551 7580552 - AG DSP Frame_Shift_Ins p.I1377Rfs*20 0.51 TCGA-C5-A1M6-01 6 88391343 88391343 G A AKIRIN2 Missense_Mutation p.S125L 0.78 tolerated(0.28) benign(0.004) TCGA-C5-A1M6-01 6 99283888 99283888 C A POU3F2 Nonsense_Mutation p.S380* 0.72 TCGA-C5-A1M6-01 7 100355923 100355923 C T ZAN Silent p.T1136T 0.41 TCGA-C5-A1M6-01 7 100485384 100485384 A G SRRT Missense_Mutation p.K744E 0.42 tolerated(0.05) benign(0.132) TCGA-C5-A1M6-01 7 111368507 111368507 C T DOCK4 Silent p.R1908R 0.35 TCGA-C5-A1M6-01 7 141539208 141539208 G A PRSS37 Missense_Mutation p.H36Y 0.49 deleterious(0.02) benign(0.016) TCGA-C5-A1M6-01 7 149494368 149494368 C G SSPO RNA 0.49 TCGA-C5-A1M6-01 7 158109594 158109594 G A PTPRN2 Missense_Mutation p.P65L 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A1M6-01 7 2284330 2284330 G C NUDT1 Missense_Mutation p.E64Q 0.44 tolerated(0.43) benign(0.02) TCGA-C5-A1M6-01 7 26224536 26224536 C G NFE2L3 Missense_Mutation p.I406M 0.29 tolerated(0.93) benign(0.007) TCGA-C5-A1M6-01 8 11180146 11180146 G A MTMR9 Missense_Mutation p.R500H 0.33 deleterious(0) probably_damaging(0.932) TCGA-C5-A1M6-01 8 120650743 120650743 C T ENPP2 Missense_Mutation p.V20I 0.24 tolerated_low_confidence(0.88) benign(0) TCGA-C5-A1M6-01 8 124359381 124359381 C T ATAD2 Silent p.Q721Q 0.24 TCGA-C5-A1M6-01 8 42044948 42044948 G A PLAT Silent p.I169I 0.15 TCGA-C5-A1M6-01 8 8235381 8235381 C T SGK223 Missense_Mutation p.V180M 0.61 benign(0.032) TCGA-C5-A1M6-01 9 117888 117888 C T FOXD4 Missense_Mutation p.D78N 0.30 tolerated(0.35) benign(0.006) TCGA-C5-A1M6-01 9 125288641 125288641 G A OR1N1 Missense_Mutation p.S311F 0.35 deleterious(0) possibly_damaging(0.543) TCGA-C5-A1M6-01 9 74971875 74971875 G T ZFAND5 Missense_Mutation p.F155L 0.25 deleterious(0.03) possibly_damaging(0.859) TCGA-C5-A1M6-01 9 84608577 84608577 G C SPATA31D1 Silent p.L1064L 0.32 TCGA-C5-A1M6-01 X 119005291 119005291 G C RNF113A Missense_Mutation p.L96V 0.35 tolerated(0.95) benign(0.001) TCGA-C5-A1M6-01 X 129799721 129799721 C G ENOX2 Missense_Mutation p.E333Q 0.19 tolerated(0.11) possibly_damaging(0.835) TCGA-C5-A1M6-01 X 139586893 139586893 C T SOX3 Silent p.A111A 0.69 TCGA-C5-A1M6-01 X 153608140 153608140 C G EMD Missense_Mutation p.S58C 0.76 tolerated(0.07) benign(0.02) TCGA-C5-A1M6-01 X 24593430 24593430 C G PCYT1B Missense_Mutation p.K238N 0.69 deleterious(0.04) benign(0.056) TCGA-C5-A1M6-01 X 24755819 24755819 G C POLA1 Missense_Mutation p.K661N 0.06 deleterious(0) probably_damaging(0.969) TCGA-C5-A1M6-01 X 48840190 48840190 C T GRIPAP1 Silent p.R423R 0.11 TCGA-C5-A1M7-01 10 29762860 29762860 G C SVIL Silent p.V1812V 0.24 TCGA-C5-A1M7-01 10 37431083 37431083 G C ANKRD30A Missense_Mutation p.E364Q 0.18 tolerated(0.24) benign(0.094) TCGA-C5-A1M7-01 10 61835654 61835654 G C ANK3 Nonsense_Mutation p.S1662* 0.19 TCGA-C5-A1M7-01 10 75608805 75608805 G A CAMK2G Silent p.A161A 0.18 TCGA-C5-A1M7-01 10 7621922 7621922 G A ITIH5 Missense_Mutation p.T405M 0.17 deleterious(0) probably_damaging(0.961) TCGA-C5-A1M7-01 11 10622540 10622540 C G MRVI1 Missense_Mutation p.E648Q 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1M7-01 11 118965672 118965672 C G H2AFX 3'UTR 0.14 TCGA-C5-A1M7-01 11 118965703 118965703 C G H2AFX Missense_Mutation p.K134N 0.19 deleterious_low_confidence(0.04) benign(0.001) TCGA-C5-A1M7-01 11 118983583 118983583 A G C2CD2L Silent p.L462L 0.07 TCGA-C5-A1M7-01 11 44289058 44289058 C T ALX4 Missense_Mutation p.E298K 0.11 tolerated(0.07) possibly_damaging(0.757) TCGA-C5-A1M7-01 11 45671568 45671568 G A CHST1 Silent p.Y302Y 0.13 TCGA-C5-A1M7-01 11 788486 788486 C T CEND1 Missense_Mutation p.D31N 0.14 deleterious_low_confidence(0.02) probably_damaging(0.913) TCGA-C5-A1M7-01 11 93523779 93523779 C G MED17 Missense_Mutation p.L153V 0.04 deleterious(0) possibly_damaging(0.681) TCGA-C5-A1M7-01 11 96124074 96124074 C G JRKL Missense_Mutation p.F87L 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-C5-A1M7-01 12 53038879 53038879 C T KRT2 Missense_Mutation p.G615E 0.18 deleterious_low_confidence(0) unknown(0) TCGA-C5-A1M7-01 12 56618691 56618691 G A NABP2 Silent p.L17L 0.21 TCGA-C5-A1M7-01 12 57677635 57677635 G A R3HDM2 Silent p.G367G 0.13 TCGA-C5-A1M7-01 12 68709007 68709007 G A MDM1 Missense_Mutation p.S407F 0.18 deleterious(0.03) benign(0.354) TCGA-C5-A1M7-01 12 70048731 70048731 C G BEST3 Missense_Mutation p.D655H 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.868) TCGA-C5-A1M7-01 12 85450557 85450557 T G LRRIQ1 Missense_Mutation p.D662E 0.06 deleterious(0.03) benign(0.063) TCGA-C5-A1M7-01 12 977921 977921 G A WNK1 Intron 0.17 TCGA-C5-A1M7-01 13 113729377 113729377 C T MCF2L Silent p.Y394Y 0.23 TCGA-C5-A1M7-01 13 50097352 50097352 G A PHF11 Silent p.V204V 0.15 TCGA-C5-A1M7-01 13 52346018 52346018 C T DHRS12 Nonsense_Mutation p.W215* 0.21 TCGA-C5-A1M7-01 13 52952233 52952233 C T THSD1 Silent p.L624L 0.14 TCGA-C5-A1M7-01 14 102516087 102516087 G A DYNC1H1 Missense_Mutation p.E4518K 0.31 probably_damaging(0.992) TCGA-C5-A1M7-01 14 31358871 31358871 G C COCH Silent p.L509L 0.11 TCGA-C5-A1M7-01 14 63473102 63473102 G A KCNH5 Missense_Mutation p.L96F 0.18 deleterious(0) probably_damaging(1) TCGA-C5-A1M7-01 14 75580938 75580938 A G NEK9 Silent p.L281L 0.05 TCGA-C5-A1M7-01 15 28515957 28515957 G C HERC2 Missense_Mutation p.Q381E 0.29 benign(0.008) TCGA-C5-A1M7-01 15 41797683 41797683 G A LTK Silent p.L581L 0.20 TCGA-C5-A1M7-01 15 48058194 48058194 G T SEMA6D Missense_Mutation p.G519V 0.04 deleterious(0) possibly_damaging(0.635) TCGA-C5-A1M7-01 15 50526076 50526076 C T SLC27A2 Missense_Mutation p.R523C 0.19 deleterious(0) probably_damaging(0.932) TCGA-C5-A1M7-01 15 77906661 77906661 C T LINGO1 Missense_Mutation p.A530T 0.08 tolerated(0.38) benign(0.407) TCGA-C5-A1M7-01 15 85326241 85326241 C T ZNF592 Missense_Mutation p.S112F 0.17 deleterious(0) possibly_damaging(0.802) TCGA-C5-A1M7-01 16 16180761 16180761 C T ABCC1 Silent p.F791F 0.23 TCGA-C5-A1M7-01 16 28518152 28518152 G A IL27 5'UTR 0.18 TCGA-C5-A1M7-01 16 29899991 29899991 C T SEZ6L2 Silent p.V303V 0.09 TCGA-C5-A1M7-01 16 69874086 69874086 C T WWP2 Missense_Mutation p.S133L 0.16 tolerated(0.24) benign(0.039) TCGA-C5-A1M7-01 17 17131259 17131259 C G FLCN Missense_Mutation p.E65Q 0.08 tolerated(0.22) benign(0.132) TCGA-C5-A1M7-01 17 37627763 37627763 C T CDK12 Missense_Mutation p.L560F 0.17 benign(0.1) TCGA-C5-A1M7-01 17 40070105 40070105 C G ACLY Missense_Mutation p.E8Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M7-01 17 76120084 76120084 G A TMC6 Silent p.I356I 0.13 TCGA-C5-A1M7-01 17 76120120 76120120 G C TMC6 Silent p.L344L 0.19 TCGA-C5-A1M7-01 17 79073865 79073865 G A BAIAP2 Silent p.A209A 0.12 TCGA-C5-A1M7-01 17 79827245 79827245 C A ARHGDIA Silent p.L104L 0.15 TCGA-C5-A1M7-01 17 80963069 80963069 C T B3GNTL1 Silent p.V142V 0.21 TCGA-C5-A1M7-01 18 43532381 43532381 G A EPG5 Missense_Mutation p.H413Y 0.37 tolerated(0.73) benign(0.001) TCGA-C5-A1M7-01 19 12805444 12805444 G C FBXW9 Missense_Mutation p.I214M 0.15 deleterious(0.05) benign(0.354) TCGA-C5-A1M7-01 19 37441146 37441146 G A ZNF568 Missense_Mutation p.C364Y 0.10 deleterious(0) probably_damaging(1) TCGA-C5-A1M7-01 19 4362616 4362616 C G SH3GL1 Missense_Mutation p.K282N 0.11 tolerated(0.3) benign(0.162) TCGA-C5-A1M7-01 19 44030328 44030328 C T ETHE1 Intron 0.10 TCGA-C5-A1M7-01 19 56243470 56243471 TC - NLRP9 Frame_Shift_Del p.E576Tfs*29 0.12 TCGA-C5-A1M7-01 1 109394361 109394361 G C AKNAD1 Nonsense_Mutation p.S309* 0.26 TCGA-C5-A1M7-01 1 115166155 115166155 C T DENND2C Missense_Mutation p.E306K 0.09 deleterious(0.01) possibly_damaging(0.566) TCGA-C5-A1M7-01 1 120342438 120342438 C T REG4 Silent p.L71L 0.29 TCGA-C5-A1M7-01 1 152276558 152276558 G C FLG Missense_Mutation p.H3602D 0.03 unknown(0) TCGA-C5-A1M7-01 1 152286055 152286055 G C FLG Nonsense_Mutation p.S436* 0.16 TCGA-C5-A1M7-01 1 153920586 153920586 C T CRTC2 Silent p.%3D 0.27 TCGA-C5-A1M7-01 1 154166153 154166153 G C TPM3 5'Flank 0.17 TCGA-C5-A1M7-01 1 156177684 156177684 C T SLC25A44 Silent p.L211L 0.19 TCGA-C5-A1M7-01 1 158636105 158636105 C A SPTA1 Splice_Site p.X740_splice 0.35 TCGA-C5-A1M7-01 1 159035774 159035774 C T AIM2 Missense_Mutation p.E248K 0.15 tolerated(0.13) benign(0.038) TCGA-C5-A1M7-01 1 16577862 16577862 C T FBXO42 Missense_Mutation p.R486Q 0.11 tolerated_low_confidence(0.17) benign(0.162) TCGA-C5-A1M7-01 1 16577905 16577905 C T FBXO42 Missense_Mutation p.E472K 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.899) TCGA-C5-A1M7-01 1 203453017 203453017 G T PRELP Missense_Mutation p.K235N 0.22 tolerated(0.11) benign(0.023) TCGA-C5-A1M7-01 1 20998569 20998569 C A KIF17 Nonsense_Mutation p.E862* 0.24 TCGA-C5-A1M7-01 1 215749313 215749313 T C KCTD3 Silent p.L85L 0.11 TCGA-C5-A1M7-01 1 222712018 222712018 G A HHIPL2 Silent p.L517L 0.29 TCGA-C5-A1M7-01 1 225699534 225699534 C T ENAH Missense_Mutation p.A484T 0.22 tolerated(0.07) benign(0.05) TCGA-C5-A1M7-01 1 235324614 235324614 C T RBM34 5'UTR 0.31 TCGA-C5-A1M7-01 1 248550938 248550938 G A OR2T6 Missense_Mutation p.R10K 0.13 deleterious(0.05) benign(0.007) TCGA-C5-A1M7-01 1 27223812 27223812 C G GPATCH3 Missense_Mutation p.E286Q 0.14 tolerated(0.09) benign(0.282) TCGA-C5-A1M7-01 1 31189126 31189126 G A MATN1 Silent p.L279L 0.09 TCGA-C5-A1M7-01 1 33794581 33794581 A C PHC2 Missense_Mutation p.L771R 0.23 tolerated(0.52) benign(0.282) TCGA-C5-A1M7-01 1 45115398 45115398 G A RNF220 Missense_Mutation p.R504Q 0.14 tolerated(0.09) benign(0.124) TCGA-C5-A1M7-01 1 63044519 63044519 C T DOCK7 Missense_Mutation p.E664K 0.11 deleterious(0.02) probably_damaging(0.967) TCGA-C5-A1M7-01 1 63902674 63902674 C G ALG6 Missense_Mutation p.Q503E 0.25 tolerated(0.05) benign(0.06) TCGA-C5-A1M7-01 1 70625092 70625092 T C LRRC40 Missense_Mutation p.T381A 0.12 tolerated(0.5) benign(0.001) TCGA-C5-A1M7-01 1 8399602 8399602 C A SLC45A1 Missense_Mutation p.F608L 0.09 tolerated(0.07) probably_damaging(0.989) TCGA-C5-A1M7-01 1 8399734 8399734 C A SLC45A1 Silent p.L652L 0.12 TCGA-C5-A1M7-01 1 8923388 8923389 - G ENO1 Frame_Shift_Ins p.Q361Pfs*17 0.14 TCGA-C5-A1M7-01 20 35748155 35748155 G C MROH8 Silent p.L799L 0.21 TCGA-C5-A1M7-01 20 44665958 44665958 C T SLC12A5 Silent p.L205L 0.15 TCGA-C5-A1M7-01 21 38302646 38302646 C T HLCS Missense_Mutation p.E362K 0.06 deleterious(0.02) benign(0.437) TCGA-C5-A1M7-01 22 17288683 17288683 C G XKR3 Missense_Mutation p.R94T 0.12 deleterious(0.01) benign(0.061) TCGA-C5-A1M7-01 22 22712567 22712567 G T IGLV1-47 Missense_Mutation p.A104S 0.15 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-C5-A1M7-01 22 31823084 31823084 C T DRG1 Missense_Mutation p.S307F 0.20 deleterious(0) possibly_damaging(0.701) TCGA-C5-A1M7-01 22 42071172 42071172 G C NHP2L1 Missense_Mutation p.S51C 0.11 tolerated(0.18) benign(0.111) TCGA-C5-A1M7-01 22 51183146 51183146 C T ACR Silent p.I259I 0.19 TCGA-C5-A1M7-01 2 103040290 103040290 C G IL18RAP Silent p.L30L 0.10 TCGA-C5-A1M7-01 2 103040354 103040354 C T IL18RAP Nonsense_Mutation p.Q52* 0.11 TCGA-C5-A1M7-01 2 163694971 163694971 G T KCNH7 Silent p.R20R 0.12 TCGA-C5-A1M7-01 2 175330601 175330601 C G GPR155 Missense_Mutation p.W432C 0.13 deleterious(0) probably_damaging(0.992) TCGA-C5-A1M7-01 2 197990563 197990563 C T ANKRD44 Missense_Mutation p.E154K 0.10 deleterious(0.04) possibly_damaging(0.685) TCGA-C5-A1M7-01 2 202619275 202619275 A T ALS2 Missense_Mutation p.W531R 0.18 deleterious(0) probably_damaging(1) TCGA-C5-A1M7-01 2 202619287 202619287 C A ALS2 Nonsense_Mutation p.E527* 0.17 TCGA-C5-A1M7-01 2 206630245 206630245 C A NRP2 Silent p.A785A 0.14 TCGA-C5-A1M7-01 2 33952701 33952701 A G AC009499.1 Intron 0.10 TCGA-C5-A1M7-01 2 38804675 38804675 C T HNRNPLL Splice_Site p.X263_splice 0.10 TCGA-C5-A1M7-01 2 71192255 71192255 C T ATP6V1B1 3'UTR 0.07 TCGA-C5-A1M7-01 3 122287480 122287480 G C DTX3L Missense_Mutation p.E182Q 0.17 deleterious(0.01) possibly_damaging(0.799) TCGA-C5-A1M7-01 3 132319907 132319907 C T ACKR4 Silent p.I222I 0.31 TCGA-C5-A1M7-01 3 138341033 138341033 G A FAIM Missense_Mutation p.E73K 0.28 deleterious(0.03) benign(0.008) TCGA-C5-A1M7-01 3 176769478 176769478 G C TBL1XR1 Missense_Mutation p.L81V 0.15 deleterious(0.01) possibly_damaging(0.652) TCGA-C5-A1M7-01 3 196654691 196654691 G A SENP5 Missense_Mutation p.E683K 0.06 deleterious(0) probably_damaging(0.998) TCGA-C5-A1M7-01 3 47098367 47098367 G A SETD2 Missense_Mutation p.P2303S 0.27 tolerated(0.24) benign(0.004) TCGA-C5-A1M7-01 3 50141706 50141706 G C RBM5 Missense_Mutation p.R198T 0.30 deleterious(0) probably_damaging(0.977) TCGA-C5-A1M7-01 3 9784651 9784651 C G BRPF1 Missense_Mutation p.I675M 0.29 deleterious(0) possibly_damaging(0.836) TCGA-C5-A1M7-01 4 120192932 120192932 G A USP53 Missense_Mutation p.M639I 0.18 deleterious(0.01) benign(0.196) TCGA-C5-A1M7-01 4 1730122 1730122 G C TACC3 Silent p.S331S 0.19 TCGA-C5-A1M7-01 4 1730411 1730411 G A TACC3 Missense_Mutation p.E428K 0.08 tolerated(0.13) benign(0.04) TCGA-C5-A1M7-01 4 71588332 71588332 C T RUFY3 Silent p.T14T 0.18 TCGA-C5-A1M7-01 5 114860238 114860238 G A FEM1C Missense_Mutation p.P541S 0.06 tolerated(0.11) possibly_damaging(0.461) TCGA-C5-A1M7-01 5 127800434 127800434 C T FBN2 Missense_Mutation p.R270H 0.15 tolerated(0.49) possibly_damaging(0.84) TCGA-C5-A1M7-01 5 13868031 13868031 A T DNAH5 Missense_Mutation p.L1302Q 0.46 possibly_damaging(0.766) TCGA-C5-A1M7-01 5 140627400 140627400 G A PCDHB15 Missense_Mutation p.E752K 0.21 deleterious_low_confidence(0.02) benign(0.368) TCGA-C5-A1M7-01 5 50685569 50685569 G C ISL1 Missense_Mutation p.E190Q 0.10 deleterious(0) probably_damaging(0.994) TCGA-C5-A1M7-01 5 52979020 52979020 G C NDUFS4 Missense_Mutation p.W166S 0.11 deleterious(0) probably_damaging(1) TCGA-C5-A1M7-01 5 63256839 63256839 G A HTR1A Silent p.T236T 0.18 TCGA-C5-A1M7-01 5 80626633 80626633 G A ACOT12 Silent p.I506I 0.12 TCGA-C5-A1M7-01 5 9119177 9119177 G A SEMA5A Missense_Mutation p.R620C 0.50 deleterious(0) probably_damaging(1) TCGA-C5-A1M7-01 6 146248395 146248395 G A SHPRH Missense_Mutation p.A1044V 0.06 tolerated(0.74) benign(0.005) TCGA-C5-A1M7-01 6 159655334 159655334 C T FNDC1 Missense_Mutation p.R1264C 0.33 deleterious_low_confidence(0) unknown(0) TCGA-C5-A1M7-01 6 165715629 165715629 G C C6orf118 Missense_Mutation p.S61C 0.26 deleterious(0.01) possibly_damaging(0.805) TCGA-C5-A1M7-01 6 43591721 43591721 G A GTPBP2 Silent p.L395L 0.16 TCGA-C5-A1M7-01 6 79577385 79577385 G T IRAK1BP1 Missense_Mutation p.R31I 0.09 tolerated(0.15) benign(0.003) TCGA-C5-A1M7-01 6 79650622 79650622 C T PHIP Missense_Mutation p.E1752K 0.29 tolerated_low_confidence(0.47) benign(0.006) TCGA-C5-A1M7-01 7 157985024 157985024 C T PTPRN2 Missense_Mutation p.A182T 0.12 tolerated(0.16) benign(0.008) TCGA-C5-A1M7-01 7 25218947 25218947 A G C7orf31 5'UTR 0.15 TCGA-C5-A1M7-01 7 27169043 27169043 G A HOXA4 Missense_Mutation p.S255F 0.17 deleterious(0) probably_damaging(0.991) TCGA-C5-A1M7-01 7 27170293 27170293 G A HOXA4 Silent p.F20F 0.33 TCGA-C5-A1M7-01 7 77423294 77423294 C G TMEM60 Missense_Mutation p.D133H 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.861) TCGA-C5-A1M7-01 7 95157138 95157138 C T ASB4 Silent p.N167N 0.16 TCGA-C5-A1M7-01 7 98574696 98574696 G A TRRAP Silent p.E2787E 0.11 TCGA-C5-A1M7-01 8 131072983 131072983 G C ASAP1 Missense_Mutation p.Q1012E 0.21 tolerated(1) benign(0.044) TCGA-C5-A1M7-01 8 143623644 143623644 C T BAI1 Missense_Mutation p.T1350M 0.10 deleterious(0.01) possibly_damaging(0.791) TCGA-C5-A1M7-01 9 101748328 101748328 G T COL15A1 Missense_Mutation p.L194F 0.15 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M7-01 9 131607662 131607662 C T CCBL1 Missense_Mutation p.R8Q 0.13 tolerated(0.08) benign(0.002) TCGA-C5-A1M7-01 9 132397623 132397623 C T NTMT1 Silent p.C184C 0.19 TCGA-C5-A1M7-01 9 140093513 140093513 C G TPRN Missense_Mutation p.E551Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M7-01 9 7015889 7015889 G A KDM4C Missense_Mutation p.G740E 0.09 tolerated(0.43) benign(0.032) TCGA-C5-A1M7-01 9 90343497 90343497 C T CTSL Intron 0.19 TCGA-C5-A1M7-01 X 100911645 100911645 G T ARMCX2 Silent p.G310G 0.13 TCGA-C5-A1M7-01 X 103268225 103268225 C T H2BFWT Missense_Mutation p.R3H 0.32 tolerated_low_confidence(0.14) benign(0.001) TCGA-C5-A1M7-01 X 118974646 118974646 A C UPF3B Missense_Mutation p.V270G 0.04 deleterious(0) possibly_damaging(0.713) TCGA-C5-A1M7-01 X 135570306 135570306 G C BRS3 Missense_Mutation p.Q11H 0.14 tolerated_low_confidence(0.05) benign(0.429) TCGA-C5-A1M7-01 X 138728984 138728984 A G MCF2 Missense_Mutation p.I35T 0.27 deleterious(0) possibly_damaging(0.646) TCGA-C5-A1M7-01 X 140969327 140969327 C A MAGEC3 Nonsense_Mutation p.Y218* 0.16 TCGA-C5-A1M7-01 X 47485863 47485863 C T CFP Missense_Mutation p.M332I 0.21 tolerated(0.76) benign(0.003) TCGA-C5-A1M7-01 X 55039934 55039934 T A ALAS2 Missense_Mutation p.M529L 0.07 deleterious(0.04) possibly_damaging(0.631) TCGA-C5-A1M7-01 X 69626750 69626750 C A KIF4A Missense_Mutation p.P1027H 0.07 tolerated(0.13) possibly_damaging(0.469) TCGA-C5-A1M7-01 X 70348264 70348264 T C MED12 Missense_Mutation p.F1110L 0.18 probably_damaging(0.952) TCGA-C5-A1M8-01 10 101715391 101715391 G A DNMBP Missense_Mutation p.R614C 0.21 deleterious(0) probably_damaging(0.996) TCGA-C5-A1M8-01 10 104679252 104679252 G A CNNM2 Missense_Mutation p.G339S 0.93 deleterious(0.01) probably_damaging(0.958) TCGA-C5-A1M8-01 10 50732789 50732789 C T ERCC6-PGBD3 Missense_Mutation p.M229I 0.46 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-C5-A1M8-01 11 27136998 27136998 G C BBOX1 Splice_Site p.X178_splice 0.90 TCGA-C5-A1M8-01 11 27137027 27137027 G C BBOX1 Missense_Mutation p.D188H 0.79 deleterious(0.04) possibly_damaging(0.856) TCGA-C5-A1M8-01 11 27137075 27137075 G A BBOX1 Missense_Mutation p.D204N 0.74 deleterious(0.01) probably_damaging(1) TCGA-C5-A1M8-01 11 59610543 59610543 C A GIF Missense_Mutation p.V110L 0.12 tolerated(0.19) benign(0.029) TCGA-C5-A1M8-01 11 8707440 8707440 G C RPL27A 3'UTR 0.13 TCGA-C5-A1M8-01 11 94230225 94230225 G A ANKRD49 Intron 0.37 TCGA-C5-A1M8-01 12 110983707 110983707 C T PPTC7 Missense_Mutation p.E194K 0.45 tolerated(0.63) benign(0.041) TCGA-C5-A1M8-01 12 42499642 42499642 C T GXYLT1 Missense_Mutation p.R281Q 0.44 deleterious(0) probably_damaging(0.99) TCGA-C5-A1M8-01 13 114806481 114806481 C T RASA3 Missense_Mutation p.V123M 0.41 deleterious(0) possibly_damaging(0.794) TCGA-C5-A1M8-01 13 46070407 46070407 C T COG3 Missense_Mutation p.P483L 0.43 deleterious(0.01) possibly_damaging(0.478) TCGA-C5-A1M8-01 13 77834572 77834572 C T MYCBP2 Missense_Mutation p.D632N 0.42 probably_damaging(0.991) TCGA-C5-A1M8-01 14 101498368 101498368 C T MIR543 RNA 0.04 TCGA-C5-A1M8-01 14 106236207 106236207 C G IGHG3 Missense_Mutation p.D200H 0.51 tolerated(0.05) benign(0.015) TCGA-C5-A1M8-01 14 21884050 21884050 C T CHD8 Missense_Mutation p.R578H 0.34 deleterious(0) probably_damaging(0.984) TCGA-C5-A1M8-01 14 22315128 22315128 G A TRAV8-2 Silent p.S22S 0.45 TCGA-C5-A1M8-01 14 22392654 22392654 G T TRAV14DV4 Missense_Mutation p.Q59H 0.45 TCGA-C5-A1M8-01 14 77319573 77319573 G A C14orf166B Silent p.L276L 0.53 TCGA-C5-A1M8-01 15 25972339 25972339 G A ATP10A Missense_Mutation p.T272M 0.49 deleterious(0) probably_damaging(1) TCGA-C5-A1M8-01 15 65628166 65628166 C G IGDCC3 Missense_Mutation p.D180H 0.49 deleterious(0.02) probably_damaging(0.928) TCGA-C5-A1M8-01 15 77472802 77472802 G A PEAK1 Silent p.L489L 0.68 TCGA-C5-A1M8-01 15 91542149 91542149 T G VPS33B 3'UTR 0.12 TCGA-C5-A1M8-01 16 14749014 14749014 G C BFAR Missense_Mutation p.E244Q 0.41 tolerated(0.17) probably_damaging(0.962) TCGA-C5-A1M8-01 17 10304411 10304411 G T MYH8 Missense_Mutation p.T1069K 0.40 deleterious(0) benign(0.282) TCGA-C5-A1M8-01 17 11511460 11511460 C T DNAH9 Silent p.V144V 0.40 TCGA-C5-A1M8-01 17 5009279 5009279 C A ZNF232 Missense_Mutation p.C392F 0.42 deleterious(0) benign(0.397) TCGA-C5-A1M8-01 17 5347476 5347476 T C DHX33 3'UTR 0.54 TCGA-C5-A1M8-01 17 62529078 62529078 G A CEP95 Silent p.K598K 0.44 TCGA-C5-A1M8-01 17 63554353 63554353 C T AXIN2 Missense_Mutation p.R129Q 0.36 deleterious(0) possibly_damaging(0.733) TCGA-C5-A1M8-01 17 65914901 65914901 G A BPTF Missense_Mutation p.R1792K 0.36 probably_damaging(0.995) TCGA-C5-A1M8-01 17 7406712 7406712 C G POLR2A Silent p.L979L 0.10 TCGA-C5-A1M8-01 17 79870207 79870207 C T SIRT7 3'UTR 0.41 TCGA-C5-A1M8-01 18 46343613 46343613 G A CTIF Missense_Mutation p.E467K 0.37 tolerated(0.14) benign(0.007) TCGA-C5-A1M8-01 18 51892104 51892104 C T C18orf54 Silent p.P252P 0.44 TCGA-C5-A1M8-01 19 12491265 12491265 G A CTD-3105H18.14 3'UTR 0.12 TCGA-C5-A1M8-01 19 21607218 21607218 C G ZNF493 Nonsense_Mutation p.S586* 0.49 TCGA-C5-A1M8-01 19 40380155 40380155 G A FCGBP Silent p.F3720F 0.17 TCGA-C5-A1M8-01 19 43979673 43979673 G C PHLDB3 Missense_Mutation p.F604L 0.27 deleterious(0) probably_damaging(0.968) TCGA-C5-A1M8-01 19 52468256 52468256 C T ZNF350 Missense_Mutation p.V484I 0.44 tolerated(0.33) benign(0.002) TCGA-C5-A1M8-01 19 54799939 54799939 C T LILRA3 3'UTR 0.62 TCGA-C5-A1M8-01 19 58018106 58018106 G T ZNF773 Missense_Mutation p.G215W 0.18 deleterious(0) probably_damaging(1) TCGA-C5-A1M8-01 19 58018107 58018107 G C ZNF773 Missense_Mutation p.G215A 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1M8-01 19 58384594 58384594 G A ZNF814 Nonsense_Mutation p.Q722* 0.22 TCGA-C5-A1M8-01 19 58384729 58384729 G C ZNF814 Missense_Mutation p.L677V 0.14 tolerated(0.51) possibly_damaging(0.614) TCGA-C5-A1M8-01 19 58564883 58564883 G T ZSCAN1 Nonsense_Mutation p.E231* 0.24 TCGA-C5-A1M8-01 1 10197129 10197129 C T UBE4B Silent p.G743G 0.45 TCGA-C5-A1M8-01 1 104122043 104122043 A T AMY2B Missense_Mutation p.D486V 0.43 deleterious(0.03) benign(0.015) TCGA-C5-A1M8-01 1 169697037 169697037 C T SELE Silent p.P437P 0.34 TCGA-C5-A1M8-01 1 174274226 174274226 G C RABGAP1L Missense_Mutation p.G476R 0.46 tolerated(0.56) benign(0.002) TCGA-C5-A1M8-01 1 213032466 213032466 C T FLVCR1 Silent p.I224I 0.51 TCGA-C5-A1M8-01 1 214549657 214549657 G A PTPN14 Nonsense_Mutation p.R938* 0.46 TCGA-C5-A1M8-01 1 22054968 22054968 G A USP48 Intron 0.05 TCGA-C5-A1M8-01 1 229667459 229667459 C T ABCB10 Silent p.S453S 0.39 TCGA-C5-A1M8-01 1 24434550 24434550 C T MYOM3 Missense_Mutation p.E59K 0.43 tolerated(0.51) benign(0.008) TCGA-C5-A1M8-01 1 248487506 248487506 C T OR2M7 Missense_Mutation p.R122H 0.43 deleterious(0.03) benign(0.017) TCGA-C5-A1M8-01 1 33409700 33409700 C T RNF19B Missense_Mutation p.R442H 0.44 deleterious(0.01) benign(0.211) TCGA-C5-A1M8-01 1 34662959 34662959 G A C1orf94 Missense_Mutation p.E152K 0.57 tolerated(0.21) benign(0.169) TCGA-C5-A1M8-01 1 91403562 91403562 A G ZNF644 Silent p.H1056H 0.40 TCGA-C5-A1M8-01 20 21367612 21367612 C G XRN2 Missense_Mutation p.P919A 0.43 tolerated_low_confidence(0.65) benign(0.007) TCGA-C5-A1M8-01 20 60901971 60901971 G A LAMA5 Missense_Mutation p.R1722W 0.16 probably_damaging(0.983) TCGA-C5-A1M8-01 21 47320525 47320525 G T PCBP3 Missense_Mutation p.K70N 0.48 tolerated(0.05) benign(0.161) TCGA-C5-A1M8-01 22 18022027 18022027 G T CECR2 Missense_Mutation p.G711V 0.30 deleterious(0) probably_damaging(0.941) TCGA-C5-A1M8-01 22 38823423 38823423 G T KCNJ4 Missense_Mutation p.Q239K 0.05 deleterious(0) possibly_damaging(0.567) TCGA-C5-A1M8-01 22 50928004 50928004 C T MIOX Missense_Mutation p.T227M 0.47 tolerated(0.05) possibly_damaging(0.637) TCGA-C5-A1M8-01 2 141032110 141032110 C T LRP1B Missense_Mutation p.S4342N 0.87 benign(0.001) TCGA-C5-A1M8-01 2 220432984 220432984 C T OBSL1 Missense_Mutation p.V359M 0.85 deleterious(0) probably_damaging(0.932) TCGA-C5-A1M8-01 2 61144086 61144086 C G REL Missense_Mutation p.P157A 0.41 tolerated(0.11) benign(0.216) TCGA-C5-A1M8-01 3 183551375 183551375 G A PARL Silent p.A311A 0.35 TCGA-C5-A1M8-01 3 195516229 195516229 G A MUC4 Missense_Mutation p.A741V 0.06 unknown(0) TCGA-C5-A1M8-01 4 87693987 87693987 C T PTPN13 Missense_Mutation p.S1747L 0.42 tolerated(0.35) benign(0.002) TCGA-C5-A1M8-01 5 161281255 161281255 C T GABRA1 Missense_Mutation p.R56C 0.43 deleterious(0) probably_damaging(0.996) TCGA-C5-A1M8-01 5 32090874 32090874 G A PDZD2 Silent p.S2440S 0.38 TCGA-C5-A1M8-01 5 35695837 35695837 G T SPEF2 Missense_Mutation p.S659I 0.46 tolerated(0.11) benign(0.121) TCGA-C5-A1M8-01 6 31733527 31733527 G A VWA7 Silent p.T840T 0.79 TCGA-C5-A1M8-01 6 32810842 32810842 C T PSMB8 Missense_Mutation p.G58S 0.80 tolerated(0.43) benign(0) TCGA-C5-A1M8-01 7 100349807 100349807 G A ZAN Silent p.T693T 0.42 TCGA-C5-A1M8-01 7 100683521 100683521 G A MUC17 Missense_Mutation p.G2942S 0.46 benign(0) TCGA-C5-A1M8-01 8 109260902 109260902 G C EIF3E Missense_Mutation p.I10M 0.45 tolerated(0.62) benign(0.12) TCGA-C5-A1M8-01 8 139749795 139749795 G T COL22A1 Missense_Mutation p.P704H 0.45 unknown(0) TCGA-C5-A1M8-01 8 382894 382894 C T FBXO25 Missense_Mutation p.R83C 0.81 deleterious(0.03) benign(0.102) TCGA-C5-A1M8-01 X 37026576 37026576 G A FAM47C Silent p.A31A 0.80 TCGA-C5-A1M8-01 X 49955455 49955455 G A AKAP4 3'UTR 0.91 TCGA-C5-A1M8-01 X 52826382 52826382 T A SPANXN5 Nonsense_Mutation p.K3* 0.91 TCGA-C5-A1M8-01 X 71932674 71932674 G A PHKA1 Missense_Mutation p.R62W 0.97 deleterious(0) probably_damaging(1) TCGA-C5-A1M9-01 10 68280427 68280427 G A CTNNA3 Silent p.L493L 0.63 TCGA-C5-A1M9-01 11 118272367 118272367 T C RP11-770J1.5 Missense_Mutation p.R6G 0.32 benign(0.3) TCGA-C5-A1M9-01 11 119290224 119290224 A C THY1 Missense_Mutation p.L127R 0.54 deleterious(0) possibly_damaging(0.831) TCGA-C5-A1M9-01 11 62762218 62762218 C T SLC22A8 Missense_Mutation p.G338S 0.40 tolerated(1) probably_damaging(0.94) TCGA-C5-A1M9-01 12 11174585 11174585 G C TAS2R19 Missense_Mutation p.L196V 0.53 tolerated(0.21) possibly_damaging(0.57) TCGA-C5-A1M9-01 12 113645984 113645984 C T IQCD 5'UTR 0.53 TCGA-C5-A1M9-01 12 12337018 12337018 C G LRP6 Missense_Mutation p.G291A 0.33 tolerated(0.07) benign(0.078) TCGA-C5-A1M9-01 12 53068947 53068947 A G KRT1 3'UTR 0.26 TCGA-C5-A1M9-01 12 53421858 53421858 G A EIF4B Missense_Mutation p.D289N 0.28 tolerated(0.07) possibly_damaging(0.539) TCGA-C5-A1M9-01 13 70681587 70681587 G A KLHL1 Missense_Mutation p.P82L 0.40 tolerated_low_confidence(0.31) benign(0.014) TCGA-C5-A1M9-01 13 84455701 84455701 C T SLITRK1 5'UTR 0.07 TCGA-C5-A1M9-01 14 73637568 73637568 T C PSEN1 Missense_Mutation p.S51P 0.38 tolerated(0.14) benign(0.323) TCGA-C5-A1M9-01 15 22990062 22990062 G A CYFIP1 Silent p.L894L 0.24 TCGA-C5-A1M9-01 15 52901518 52901518 C T FAM214A Silent p.L531L 0.58 TCGA-C5-A1M9-01 16 21854826 21854826 G A NPIPB4 Silent p.V142V 0.23 TCGA-C5-A1M9-01 16 73126796 73126796 G A HCCAT5 RNA 0.26 TCGA-C5-A1M9-01 17 30179038 30179038 G A COPRS 3'UTR 0.38 TCGA-C5-A1M9-01 17 34340828 34340828 C G CCL23 Missense_Mutation p.E86D 0.55 tolerated(0.28) benign(0.012) TCGA-C5-A1M9-01 17 34340871 34340871 C T CCL23 Missense_Mutation p.C72Y 0.49 deleterious(0) probably_damaging(1) TCGA-C5-A1M9-01 17 7230490 7230490 G A NEURL4 Missense_Mutation p.H263Y 0.39 tolerated(0.18) benign(0.043) TCGA-C5-A1M9-01 17 75186917 75186917 G A SEC14L1 Silent p.L32L 0.34 TCGA-C5-A1M9-01 18 48575080 48575080 C T SMAD4 Missense_Mutation p.H92Y 0.76 deleterious(0) probably_damaging(1) TCGA-C5-A1M9-01 19 15083604 15083604 C T SLC1A6 Missense_Mutation p.R40H 0.14 tolerated(0.18) benign(0.203) TCGA-C5-A1M9-01 19 30935510 30935510 C T ZNF536 Silent p.C347C 0.37 TCGA-C5-A1M9-01 19 9965242 9965242 C T OLFM2 Missense_Mutation p.E329K 0.38 deleterious(0) probably_damaging(0.99) TCGA-C5-A1M9-01 1 11854118 11854118 G A MTHFR Missense_Mutation p.P459L 0.39 tolerated(0.06) possibly_damaging(0.756) TCGA-C5-A1M9-01 1 144811954 144811954 T C NBPF9 Missense_Mutation p.Y70H 0.32 deleterious(0) possibly_damaging(0.61) TCGA-C5-A1M9-01 1 160811119 160811119 T C CD244 Missense_Mutation p.Y184C 0.34 deleterious(0.03) possibly_damaging(0.755) TCGA-C5-A1M9-01 1 220440280 220440280 G C RAB3GAP2 Intron 0.46 TCGA-C5-A1M9-01 1 232626797 232626797 C T SIPA1L2 Silent p.L543L 0.57 TCGA-C5-A1M9-01 1 27106648 27106648 G A ARID1A Missense_Mutation p.G2087R 0.32 probably_damaging(0.96) TCGA-C5-A1M9-01 1 47338925 47338925 C G CYP4Z2P RNA 0.38 TCGA-C5-A1M9-01 1 92798963 92798963 C G RPAP2 Missense_Mutation p.P491A 0.36 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M9-01 22 37964251 37964251 C T CDC42EP1 Silent p.L200L 0.51 TCGA-C5-A1M9-01 2 201507422 201507422 A C AOX1 Silent p.P915P 0.22 TCGA-C5-A1M9-01 2 216272840 216272840 G A FN1 Missense_Mutation p.P837S 0.65 deleterious(0) probably_damaging(1) TCGA-C5-A1M9-01 2 216272872 216272872 G C FN1 Nonsense_Mutation p.S826* 0.59 TCGA-C5-A1M9-01 3 105464807 105464807 C T CBLB Missense_Mutation p.D267N 0.39 deleterious(0.03) probably_damaging(0.977) TCGA-C5-A1M9-01 3 119462963 119462963 C T MAATS1 Missense_Mutation p.R608W 0.39 deleterious(0) probably_damaging(1) TCGA-C5-A1M9-01 3 141900366 141900366 C T GK5 Missense_Mutation p.V329I 0.41 tolerated(0.15) benign(0.358) TCGA-C5-A1M9-01 4 121774626 121774626 G A PRDM5 Missense_Mutation p.R83C 0.23 deleterious(0) probably_damaging(0.912) TCGA-C5-A1M9-01 4 13600774 13600774 T C BOD1L1 Missense_Mutation p.M2584V 0.35 benign(0) TCGA-C5-A1M9-01 4 153245393 153245393 C T FBXW7 Missense_Mutation p.D600N 0.73 deleterious(0) probably_damaging(0.998) TCGA-C5-A1M9-01 4 185687059 185687059 C A ACSL1 Missense_Mutation p.A449S 0.07 deleterious(0.02) benign(0.435) TCGA-C5-A1M9-01 4 96762017 96762017 A T PDHA2 Missense_Mutation p.D239V 0.41 deleterious(0) probably_damaging(0.942) TCGA-C5-A1M9-01 6 154567919 154567919 G C IPCEF1 Intron 0.43 TCGA-C5-A1M9-01 7 148515119 148515119 G A EZH2 Missense_Mutation p.P364S 0.31 tolerated(0.48) possibly_damaging(0.46) TCGA-C5-A1M9-01 7 149129368 149129368 C T ZNF777 Silent p.T665T 0.49 TCGA-C5-A1M9-01 7 151873935 151873954 GTCTTTTCTCCATCATTTAG - KMT2C Frame_Shift_Del p.L2862Ffs*6 0.53 TCGA-C5-A1M9-01 7 4901303 4901303 G A PAPOLB Missense_Mutation p.L46F 0.20 deleterious(0) probably_damaging(1) TCGA-C5-A1M9-01 7 63538653 63538653 C T ZNF727 Missense_Mutation p.S409L 0.42 deleterious(0.03) benign(0.039) TCGA-C5-A1M9-01 7 73010041 73010041 G A MLXIPL Missense_Mutation p.R746C 0.13 deleterious(0) probably_damaging(0.999) TCGA-C5-A1M9-01 7 94052321 94052321 G A COL1A2 Missense_Mutation p.R819H 0.27 unknown(0) TCGA-C5-A1M9-01 8 101174635 101174635 C A SPAG1 Missense_Mutation p.L43I 0.35 deleterious(0.02) possibly_damaging(0.821) TCGA-C5-A1M9-01 8 144463474 144463474 G A RHPN1 Missense_Mutation p.R483H 0.12 tolerated(0.05) benign(0.004) TCGA-C5-A1M9-01 8 65509397 65509397 C T CYP7B1 Silent p.P441P 0.24 TCGA-C5-A1M9-01 9 72365756 72365756 G C PTAR1 Missense_Mutation p.P66R 0.24 tolerated(0.06) probably_damaging(0.917) TCGA-C5-A1M9-01 9 731209 731209 G A KANK1 Missense_Mutation p.G983D 0.33 tolerated(0.11) possibly_damaging(0.703) TCGA-C5-A1M9-01 9 79465412 79465412 G A PRUNE2 Missense_Mutation p.S104L 0.57 deleterious(0) probably_damaging(0.994) TCGA-C5-A1M9-01 X 118920604 118920604 C A RPL39 3'UTR 0.30 TCGA-C5-A1M9-01 X 149638349 149638349 C T MAMLD1 Silent p.S143S 0.08 TCGA-C5-A1M9-01 X 34657409 34657409 G A TMEM47 Nonsense_Mutation p.R108* 0.30 TCGA-C5-A1M9-01 X 64717050 64717050 A G ZC3H12B Missense_Mutation p.Q216R 0.56 tolerated(0.07) benign(0.217) TCGA-C5-A1ME-01 10 103557892 103557892 C A MGEA5 Missense_Mutation p.R610L 0.21 deleterious(0) probably_damaging(0.912) TCGA-C5-A1ME-01 10 111647914 111647914 G A XPNPEP1 Missense_Mutation p.A182V 0.25 tolerated(0.19) benign(0.008) TCGA-C5-A1ME-01 10 124459221 124459221 T C C10orf120 Missense_Mutation p.K29R 0.08 tolerated(0.27) benign(0.01) TCGA-C5-A1ME-01 10 14816480 14816480 G A FAM107B Silent p.G61G 0.49 TCGA-C5-A1ME-01 10 32560653 32560653 C T EPC1 Missense_Mutation p.R756Q 0.04 tolerated(0.38) probably_damaging(0.979) TCGA-C5-A1ME-01 10 34739377 34739377 C G PARD3 Splice_Site p.X195_splice 0.11 TCGA-C5-A1ME-01 11 122017232 122017232 G A MIRLET7A2 RNA 0.07 TCGA-C5-A1ME-01 11 3059277 3059277 C T CARS Intron 0.17 TCGA-C5-A1ME-01 11 94861718 94861718 C G ENDOD1 Missense_Mutation p.L160V 0.07 deleterious(0) probably_damaging(0.999) TCGA-C5-A1ME-01 12 16043597 16043597 G A STRAP Missense_Mutation p.E133K 0.07 deleterious(0.04) possibly_damaging(0.713) TCGA-C5-A1ME-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.47 deleterious(0) benign(0.361) TCGA-C5-A1ME-01 12 53039041 53039041 C A KRT2 Missense_Mutation p.G561V 0.03 tolerated(0.05) unknown(0) TCGA-C5-A1ME-01 12 57081748 57081748 C T PTGES3 Intron 0.28 TCGA-C5-A1ME-01 12 70178523 70178523 A C RAB3IP Missense_Mutation p.E194D 0.14 deleterious(0) probably_damaging(0.999) TCGA-C5-A1ME-01 12 71148343 71148343 C T PTPRR Intron 0.25 TCGA-C5-A1ME-01 12 96063914 96063914 C A NTN4 Nonsense_Mutation p.E507* 0.31 TCGA-C5-A1ME-01 12 978057 978057 A G WNK1 Intron 0.35 TCGA-C5-A1ME-01 13 78320890 78320890 C T SLAIN1 Silent p.S222S 0.07 TCGA-C5-A1ME-01 13 96293802 96293802 G A DZIP1 Missense_Mutation p.P115L 0.07 deleterious(0) probably_damaging(1) TCGA-C5-A1ME-01 14 60212650 60212650 A G RTN1 Missense_Mutation p.I264T 0.04 deleterious(0.01) benign(0.05) TCGA-C5-A1ME-01 14 60933701 60933701 G A C14orf39 Missense_Mutation p.L277F 0.12 deleterious(0.01) probably_damaging(0.934) TCGA-C5-A1ME-01 14 70512940 70512940 G A SLC8A3 Silent p.I836I 0.25 TCGA-C5-A1ME-01 15 52877015 52877015 C T FAM214A Missense_Mutation p.V1002M 0.17 tolerated(1) benign(0.001) TCGA-C5-A1ME-01 15 88483934 88483934 C T NTRK3 Missense_Mutation p.E546K 0.07 deleterious(0) probably_damaging(0.991) TCGA-C5-A1ME-01 16 55362886 55362886 G A IRX6 Silent p.A332A 0.08 TCGA-C5-A1ME-01 16 65022100 65022100 G A CDH11 Missense_Mutation p.T320M 0.25 deleterious(0.01) probably_damaging(0.934) TCGA-C5-A1ME-01 16 67514899 67514899 C T ATP6V0D1 Missense_Mutation p.A31T 0.18 tolerated(0.49) benign(0.005) TCGA-C5-A1ME-01 16 74752969 74752969 G A FA2H Missense_Mutation p.R235C 0.31 deleterious(0) probably_damaging(0.998) TCGA-C5-A1ME-01 17 33591389 33591390 - A SLFN5 Frame_Shift_Ins p.L443Tfs*58 0.12 TCGA-C5-A1ME-01 17 39553231 39553231 G A KRT31 Missense_Mutation p.S122F 0.19 deleterious(0) benign(0.03) TCGA-C5-A1ME-01 17 40934779 40934779 C A WNK4 Silent p.R208R 0.09 TCGA-C5-A1ME-01 17 42336551 42336551 C A SLC4A1 Missense_Mutation p.A286S 0.12 tolerated(1) possibly_damaging(0.524) TCGA-C5-A1ME-01 17 4720323 4720323 C T PLD2 Silent p.H558H 0.15 TCGA-C5-A1ME-01 17 48750921 48750921 C T ABCC3 Missense_Mutation p.P834L 0.15 deleterious(0) benign(0.007) TCGA-C5-A1ME-01 17 77808441 77808441 C T CBX4 Missense_Mutation p.G334R 0.27 tolerated(0.24) benign(0.081) TCGA-C5-A1ME-01 18 44407992 44407992 C T PIAS2 Missense_Mutation p.E480K 0.19 deleterious(0.01) possibly_damaging(0.651) TCGA-C5-A1ME-01 19 12858250 12858250 G A ASNA1 Silent p.L253L 0.21 TCGA-C5-A1ME-01 19 21934426 21934426 C G ZNF100 Intron 0.17 TCGA-C5-A1ME-01 19 21990581 21990583 TTA - ZNF43 In_Frame_Del p.H752_K753delinsQ 0.25 TCGA-C5-A1ME-01 19 45912703 45912703 G A CD3EAP Missense_Mutation p.E493K 0.52 tolerated(0.12) benign(0.045) TCGA-C5-A1ME-01 1 110561084 110561084 G A AHCYL1 Missense_Mutation p.D405N 0.18 deleterious(0.03) benign(0.398) TCGA-C5-A1ME-01 1 115168296 115168296 C T DENND2C Missense_Mutation p.D104N 0.12 tolerated(0.34) benign(0.002) TCGA-C5-A1ME-01 1 11897157 11897157 C T CLCN6 Silent p.I694I 0.22 TCGA-C5-A1ME-01 1 150958852 150958852 C A ANXA9 Silent p.T171T 0.21 TCGA-C5-A1ME-01 1 153941905 153941905 G A CREB3L4 Missense_Mutation p.V173I 0.14 tolerated(0.36) benign(0.002) TCGA-C5-A1ME-01 1 19027177 19027177 C T PAX7 Missense_Mutation p.R273C 0.16 deleterious(0) probably_damaging(1) TCGA-C5-A1ME-01 1 202279443 202279443 A G LGR6 Missense_Mutation p.K509E 0.07 deleterious(0.01) benign(0.102) TCGA-C5-A1ME-01 1 248039396 248039396 G T TRIM58 Missense_Mutation p.A356S 0.21 tolerated(0.2) benign(0.41) TCGA-C5-A1ME-01 1 27627932 27627932 T A WDTC1 Missense_Mutation p.L482H 0.11 deleterious(0) probably_damaging(0.98) TCGA-C5-A1ME-01 1 6314124 6314124 A G GPR153 Missense_Mutation p.V147A 0.04 deleterious(0) probably_damaging(0.997) TCGA-C5-A1ME-01 20 55982719 55982719 C T RBM38 Silent p.Y179Y 0.13 TCGA-C5-A1ME-01 21 22710836 22710836 G A NCAM2 Silent p.T342T 0.31 TCGA-C5-A1ME-01 22 37334311 37334311 G A CSF2RB Missense_Mutation p.D821N 0.26 deleterious(0) probably_damaging(0.932) TCGA-C5-A1ME-01 2 109545671 109545671 A T EDAR Nonsense_Mutation p.C113* 0.08 TCGA-C5-A1ME-01 2 149247488 149247488 G A MBD5 Silent p.Q1196Q 0.47 TCGA-C5-A1ME-01 2 159170296 159170296 T C CCDC148 Missense_Mutation p.Y292C 0.13 deleterious(0.03) probably_damaging(0.966) TCGA-C5-A1ME-01 2 160729002 160729002 C T LY75-CD302 Missense_Mutation p.E693K 0.09 deleterious(0.01) benign(0.081) TCGA-C5-A1ME-01 2 179483070 179483070 A T TTN Silent p.V15705V 0.20 TCGA-C5-A1ME-01 2 220074986 220074986 C T ABCB6 Missense_Mutation p.V796I 0.10 deleterious(0) probably_damaging(0.948) TCGA-C5-A1ME-01 2 233406222 233406222 C A CHRNG Missense_Mutation p.N163K 0.23 deleterious(0) probably_damaging(1) TCGA-C5-A1ME-01 3 49934783 49934783 C G MST1R Missense_Mutation p.E705Q 0.11 tolerated(0.32) benign(0.057) TCGA-C5-A1ME-01 3 50293634 50293634 G A GNAI2 Missense_Mutation p.D159N 0.23 tolerated(0.19) benign(0.234) TCGA-C5-A1ME-01 3 50374657 50374657 C T RASSF1 Intron 0.24 TCGA-C5-A1ME-01 3 51897275 51897275 C T IQCF2 Silent p.I128I 0.18 TCGA-C5-A1ME-01 4 123227038 123227038 G A KIAA1109 Missense_Mutation p.E3227K 0.20 benign(0.194) TCGA-C5-A1ME-01 5 147785921 147785921 C G FBXO38 Missense_Mutation p.L278V 0.06 deleterious(0.01) probably_damaging(0.979) TCGA-C5-A1ME-01 6 142758605 142758605 G A GPR126 Silent p.K1118K 0.16 TCGA-C5-A1ME-01 6 26104206 26104206 T A HIST1H4C Missense_Mutation p.L11M 0.10 deleterious_low_confidence(0.02) unknown(0) TCGA-C5-A1ME-01 6 28194897 28194897 G A ZSCAN9 Missense_Mutation p.G12D 0.24 tolerated(0.32) benign(0) TCGA-C5-A1ME-01 6 30459060 30459060 G A HLA-E Missense_Mutation p.E253K 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-C5-A1ME-01 6 31928481 31928481 C T SKIV2L Missense_Mutation p.R170W 0.08 deleterious(0.04) benign(0) TCGA-C5-A1ME-01 6 33147578 33147578 C T COL11A2 Missense_Mutation p.R369Q 0.09 benign(0.417) TCGA-C5-A1ME-01 6 38702259 38702259 G A DNAH8 5'UTR 0.23 TCGA-C5-A1ME-01 6 47646846 47646846 T C GPR111 Silent p.T149T 0.21 TCGA-C5-A1ME-01 6 7310258 7310258 C T SSR1 Silent p.L28L 0.06 TCGA-C5-A1ME-01 7 100549927 100549927 G A MUC3A Missense_Mutation p.V170I 0.09 tolerated(1) unknown(0) TCGA-C5-A1ME-01 7 111846857 111846857 A G ZNF277 Missense_Mutation p.Y29C 0.21 tolerated_low_confidence(0.17) benign(0.221) TCGA-C5-A1ME-01 7 141802440 141802440 G C MGAM Silent p.G1762G 0.14 TCGA-C5-A1ME-01 7 1517492 1517492 C T INTS1 Missense_Mutation p.A1571T 0.22 tolerated_low_confidence(0.62) benign(0.001) TCGA-C5-A1ME-01 8 141566113 141566113 C T AGO2 Missense_Mutation p.R384Q 0.05 tolerated(0.24) benign(0.007) TCGA-C5-A1ME-01 9 135801105 135801105 C T TSC1 Missense_Mutation p.E78K 0.22 deleterious(0) possibly_damaging(0.801) TCGA-C5-A1ME-01 9 35608000 35608000 C T TESK1 Missense_Mutation p.R263C 0.14 deleterious(0.01) probably_damaging(1) TCGA-C5-A1ME-01 9 39073919 39073919 C T CNTNAP3 Missense_Mutation p.E1279K 0.07 deleterious(0.02) possibly_damaging(0.636) TCGA-C5-A1ME-01 X 101159271 101159271 G A ZMAT1 Missense_Mutation p.L52F 0.06 tolerated(0.13) benign(0.01) TCGA-C5-A1ME-01 X 107975753 107975753 C G IRS4 3'UTR 0.19 TCGA-C5-A1ME-01 X 153184347 153184347 A G ARHGAP4 Missense_Mutation p.V364A 0.07 tolerated(0.37) benign(0.016) TCGA-C5-A1ME-01 X 69460048 69460048 C T AWAT1 Missense_Mutation p.H299Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MF-01 10 105197798 105197798 A G PDCD11 Missense_Mutation p.N1291S 0.07 tolerated(0.73) benign(0.001) TCGA-C5-A1MF-01 10 120353959 120353959 G A PRLHR Silent p.A266A 0.45 TCGA-C5-A1MF-01 10 12203080 12203080 C G SEC61A2 Missense_Mutation p.S376C 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1MF-01 10 13275614 13275614 G A UCMA Silent p.F48F 0.22 TCGA-C5-A1MF-01 10 7423844 7423844 G C SFMBT2 Nonsense_Mutation p.S6* 0.13 TCGA-C5-A1MF-01 11 103049938 103049938 C G DYNC2H1 Missense_Mutation p.S2108C 0.65 probably_damaging(1) TCGA-C5-A1MF-01 11 36484190 36484190 C T PRR5L Silent p.S337S 0.42 TCGA-C5-A1MF-01 11 5461827 5461827 G C OR51I1 Silent p.L306L 0.04 TCGA-C5-A1MF-01 11 64055225 64055225 C T GPR137 Missense_Mutation p.S205L 0.14 deleterious(0.04) probably_damaging(0.964) TCGA-C5-A1MF-01 11 78147545 78147545 C G NARS2 3'UTR 0.09 TCGA-C5-A1MF-01 12 116675500 116675500 G A MED13L Missense_Mutation p.T28M 0.41 deleterious(0) unknown(0) TCGA-C5-A1MF-01 12 12303967 12303967 T G LRP6 Missense_Mutation p.T933P 0.18 tolerated(0.17) benign(0.001) TCGA-C5-A1MF-01 12 28605543 28605543 C T CCDC91 Nonsense_Mutation p.Q353* 0.16 TCGA-C5-A1MF-01 12 45568077 45568077 A T PLEKHA8P1 RNA 0.25 TCGA-C5-A1MF-01 12 48189022 48189022 G A HDAC7 Missense_Mutation p.P410L 0.63 tolerated(0.99) benign(0.003) TCGA-C5-A1MF-01 12 56222390 56222390 C A DNAJC14 Missense_Mutation p.G18V 0.28 deleterious_low_confidence(0) possibly_damaging(0.639) TCGA-C5-A1MF-01 12 56638887 56638887 A G ANKRD52 Missense_Mutation p.V831A 0.24 tolerated(0.17) possibly_damaging(0.658) TCGA-C5-A1MF-01 12 6062680 6062682 TCC - VWF In_Frame_Del p.G2656del 0.71 TCGA-C5-A1MF-01 12 9265042 9265042 T C A2M Missense_Mutation p.M121V 0.70 tolerated(0.19) benign(0) TCGA-C5-A1MF-01 13 114762093 114762093 G C RASA3 Silent p.V685V 0.32 TCGA-C5-A1MF-01 13 31205523 31205523 G A USPL1 Silent p.S260S 0.33 TCGA-C5-A1MF-01 13 52605014 52605014 C T UTP14C Missense_Mutation p.R692W 0.04 deleterious(0.05) benign(0) TCGA-C5-A1MF-01 14 103406262 103406262 G A CDC42BPB Silent p.D1538D 0.29 TCGA-C5-A1MF-01 14 21250155 21250155 C A RNASE6 Silent p.V99V 0.44 TCGA-C5-A1MF-01 14 22111569 22111569 C T TRAV1-2 Missense_Mutation p.T30M 0.38 tolerated(0.14) benign(0.015) TCGA-C5-A1MF-01 14 47314992 47314992 G A MDGA2 Missense_Mutation p.A989V 0.43 tolerated(0.24) benign(0.023) TCGA-C5-A1MF-01 14 47351300 47351300 G A MDGA2 Missense_Mutation p.P788L 0.45 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MF-01 14 64491095 64491095 C T SYNE2 Nonsense_Mutation p.Q1920* 0.34 TCGA-C5-A1MF-01 14 65259917 65259917 G C SPTB Missense_Mutation p.R822G 0.05 deleterious(0) probably_damaging(0.975) TCGA-C5-A1MF-01 15 41165905 41165905 C G RHOV Missense_Mutation p.E82Q 0.31 tolerated(1) benign(0.008) TCGA-C5-A1MF-01 15 62283886 62283886 G T VPS13C Nonsense_Mutation p.S490* 0.37 TCGA-C5-A1MF-01 15 86228062 86228062 C T AKAP13 Silent p.F1753F 0.38 TCGA-C5-A1MF-01 16 310008 310008 G A ITFG3 Silent p.G142G 0.32 TCGA-C5-A1MF-01 16 67574374 67574374 C T FAM65A Silent p.F235F 0.39 TCGA-C5-A1MF-01 16 70405963 70405963 C T DDX19A 3'UTR 0.35 TCGA-C5-A1MF-01 16 81927367 81927367 G A PLCG2 Missense_Mutation p.R347H 0.32 deleterious(0) possibly_damaging(0.825) TCGA-C5-A1MF-01 17 10314183 10314183 C G MYH8 Missense_Mutation p.E500Q 0.07 deleterious(0.02) possibly_damaging(0.868) TCGA-C5-A1MF-01 17 5087112 5087112 C G ZNF594 Missense_Mutation p.R147T 0.06 deleterious(0.03) benign(0.19) TCGA-C5-A1MF-01 17 56540518 56540518 C T HSF5 Silent p.E389E 0.34 TCGA-C5-A1MF-01 17 74771185 74771185 C T MFSD11 Silent p.L327L 0.31 TCGA-C5-A1MF-01 17 77082434 77082434 G A ENGASE 3'UTR 0.09 TCGA-C5-A1MF-01 17 8404231 8404231 C G MYH10 Missense_Mutation p.K1219N 0.06 benign(0.353) TCGA-C5-A1MF-01 19 10468442 10468442 C T TYK2 Missense_Mutation p.E822K 0.17 deleterious(0.02) probably_damaging(0.974) TCGA-C5-A1MF-01 19 10625529 10625529 C T S1PR5 Silent p.E53E 0.12 TCGA-C5-A1MF-01 19 11917006 11917006 C T ZNF491 Missense_Mutation p.R80C 0.77 tolerated(1) benign(0) TCGA-C5-A1MF-01 19 11943292 11943292 G C ZNF440 Missense_Mutation p.R434T 0.08 tolerated(0.62) benign(0.026) TCGA-C5-A1MF-01 19 11943610 11943610 G C ZNF440 Missense_Mutation p.R540T 0.08 deleterious(0.01) benign(0.03) TCGA-C5-A1MF-01 19 12076010 12076010 C G ZNF763 5'UTR 0.15 TCGA-C5-A1MF-01 19 53886455 53886455 T G ZNF525 3'UTR 0.30 TCGA-C5-A1MF-01 19 56704223 56704223 C T ZSCAN5B Missense_Mutation p.E67K 0.30 tolerated(0.09) probably_damaging(0.998) TCGA-C5-A1MF-01 19 56733683 56733683 C G ZSCAN5A Missense_Mutation p.R251T 0.29 tolerated(0.14) benign(0.354) TCGA-C5-A1MF-01 19 9061666 9061666 G C MUC16 Missense_Mutation p.L8594V 0.17 unknown(0) TCGA-C5-A1MF-01 1 152279106 152279106 A G FLG Silent p.H2752H 0.08 TCGA-C5-A1MF-01 1 153912718 153912722 TTCTT - DENND4B Frame_Shift_Del p.K505Afs*34 0.45 TCGA-C5-A1MF-01 1 154306711 154306711 G A ATP8B2 Missense_Mutation p.E273K 0.03 tolerated(0.14) benign(0.335) TCGA-C5-A1MF-01 1 161128205 161128205 G A UFC1 Missense_Mutation p.G143S 0.38 deleterious(0.02) probably_damaging(0.977) TCGA-C5-A1MF-01 1 16903865 16903865 T C NBPF1 Silent p.R617R 0.08 TCGA-C5-A1MF-01 1 190067662 190067662 C T BRINP3 Nonsense_Mutation p.W596* 0.44 TCGA-C5-A1MF-01 1 209789963 209789963 C G LAMB3 Missense_Mutation p.E1079Q 0.20 tolerated(0.11) benign(0.126) TCGA-C5-A1MF-01 1 209791342 209791342 C T LAMB3 Silent p.L987L 0.20 TCGA-C5-A1MF-01 1 21807446 21807446 G T NBPF3 Nonsense_Mutation p.E469* 0.15 TCGA-C5-A1MF-01 1 226426770 226426770 C A LIN9 Nonsense_Mutation p.E399* 0.11 TCGA-C5-A1MF-01 1 228003831 228003831 C T PRSS38 Silent p.G63G 0.11 TCGA-C5-A1MF-01 1 230398692 230398692 G A GALNT2 Silent p.R418R 0.21 TCGA-C5-A1MF-01 1 233372617 233372617 G A PCNXL2 Missense_Mutation p.R778C 0.19 deleterious(0.01) probably_damaging(0.943) TCGA-C5-A1MF-01 1 237789071 237789071 G C RYR2 Missense_Mutation p.E2045Q 0.22 benign(0.004) TCGA-C5-A1MF-01 1 28930062 28930062 T C TAF12 Missense_Mutation p.T159A 0.05 tolerated(0.11) benign(0.001) TCGA-C5-A1MF-01 1 43827899 43827899 G C CDC20 Missense_Mutation p.E413Q 0.30 deleterious(0) probably_damaging(1) TCGA-C5-A1MF-01 1 43827910 43827910 A C CDC20 Silent p.S416S 0.30 TCGA-C5-A1MF-01 1 45120220 45120220 G C TMEM53 3'UTR 0.34 TCGA-C5-A1MF-01 1 46746151 46746151 G A LRRC41 Missense_Mutation p.S613L 0.39 tolerated(0.09) possibly_damaging(0.519) TCGA-C5-A1MF-01 1 60312834 60312834 G A HOOK1 Silent p.L302L 0.07 TCGA-C5-A1MF-01 1 93649015 93649015 G A CCDC18 Missense_Mutation p.E87K 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1MF-01 1 93711674 93711674 G T CCDC18 Missense_Mutation p.M1051I 0.07 tolerated(0.19) benign(0.026) TCGA-C5-A1MF-01 1 949726 949726 C G ISG15 Missense_Mutation p.F122L 0.06 tolerated(0.1) probably_damaging(0.979) TCGA-C5-A1MF-01 1 97279048 97279048 G C PTBP2 3'UTR 0.09 TCGA-C5-A1MF-01 20 61527728 61527728 C G DIDO1 Missense_Mutation p.D691H 0.36 probably_damaging(1) TCGA-C5-A1MF-01 21 30909691 30909691 C T GRIK1 Missense_Mutation p.A904T 0.37 tolerated_low_confidence(0.14) probably_damaging(0.937) TCGA-C5-A1MF-01 21 34648988 34648988 G C IL10RB Missense_Mutation p.L87F 0.04 deleterious(0.02) benign(0.343) TCGA-C5-A1MF-01 22 19036055 19036055 C T DGCR2 Missense_Mutation p.E302K 0.38 tolerated(0.08) probably_damaging(0.932) TCGA-C5-A1MF-01 22 42461877 42461877 G T NAGA Silent p.I208I 0.09 TCGA-C5-A1MF-01 2 15307388 15307388 C T NBAS Silent p.L2300L 0.30 TCGA-C5-A1MF-01 2 179325902 179325902 G A DFNB59 Silent p.E320E 0.03 TCGA-C5-A1MF-01 2 179412236 179412236 G T TTN Missense_Mutation p.L31373I 0.26 TCGA-C5-A1MF-01 2 179458767 179458767 A G TTN Silent p.R19451R 0.36 TCGA-C5-A1MF-01 2 241631397 241631397 C T AQP12A Missense_Mutation p.R23W 0.37 tolerated(0.25) benign(0.051) TCGA-C5-A1MF-01 2 75116397 75116397 C T HK2 Nonsense_Mutation p.R801* 0.33 TCGA-C5-A1MF-01 2 88991297 88991297 C T RPIA Silent p.S27S 0.27 TCGA-C5-A1MF-01 3 142443466 142443466 C T TRPC1 Missense_Mutation p.S22F 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.485) TCGA-C5-A1MF-01 3 142443468 142443468 C T TRPC1 Missense_Mutation p.P23S 0.11 deleterious_low_confidence(0.03) benign(0.017) TCGA-C5-A1MF-01 3 147128259 147128259 C G ZIC1 Silent p.L120L 0.13 TCGA-C5-A1MF-01 3 179593161 179593161 C T PEX5L Missense_Mutation p.G204R 0.70 tolerated_low_confidence(0.08) benign(0.194) TCGA-C5-A1MF-01 3 185252685 185252685 C T LIPH Silent p.L95L 0.13 TCGA-C5-A1MF-01 3 189608648 189608648 C T TP63 Nonsense_Mutation p.Q575* 0.20 TCGA-C5-A1MF-01 3 196089280 196089280 G A UBXN7 Silent p.V371V 0.06 TCGA-C5-A1MF-01 3 38592173 38592173 C T SCN5A Missense_Mutation p.R1897Q 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A1MF-01 3 45942736 45942736 G A CCR9 Missense_Mutation p.M152I 0.35 tolerated(0.16) benign(0.009) TCGA-C5-A1MF-01 3 47703996 47703996 C G SMARCC1 Missense_Mutation p.L662F 0.37 deleterious(0) probably_damaging(0.996) TCGA-C5-A1MF-01 3 9594298 9594298 G A LHFPL4 Silent p.I22I 0.37 TCGA-C5-A1MF-01 4 155161923 155161923 C G DCHS2 Missense_Mutation p.L1920F 0.34 tolerated(0.06) probably_damaging(0.989) TCGA-C5-A1MF-01 5 150925842 150925842 G C FAT2 Missense_Mutation p.Q1616E 0.39 benign(0.012) TCGA-C5-A1MF-01 5 159821108 159821108 T C C5orf54 Missense_Mutation p.I464V 0.38 tolerated(1) benign(0) TCGA-C5-A1MF-01 6 133100529 133100529 C T SLC18B1 Missense_Mutation p.E225K 0.32 tolerated(1) benign(0.004) TCGA-C5-A1MF-01 6 139203908 139203908 C A ECT2L Missense_Mutation p.A643D 0.31 tolerated(0.26) possibly_damaging(0.899) TCGA-C5-A1MF-01 6 150158587 150158587 G A LRP11 Missense_Mutation p.T309I 0.41 tolerated(0.27) benign(0.005) TCGA-C5-A1MF-01 6 161969941 161969941 G A PARK2 Missense_Mutation p.P343L 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-C5-A1MF-01 6 25777127 25777127 C T SLC17A4 Missense_Mutation p.S403F 0.05 tolerated(0.54) benign(0.017) TCGA-C5-A1MF-01 6 26392863 26392863 C T BTN2A2 Nonsense_Mutation p.Q414* 0.11 TCGA-C5-A1MF-01 6 29408150 29408150 G A OR10C1 Missense_Mutation p.D120N 0.06 deleterious(0) probably_damaging(0.996) TCGA-C5-A1MF-01 6 75884903 75884903 C A COL12A1 Missense_Mutation p.G854V 0.26 benign(0.335) TCGA-C5-A1MF-01 7 138391319 138391319 G A ATP6V0A4 3'UTR 0.35 TCGA-C5-A1MF-01 7 40118338 40118338 G A CDK13 Missense_Mutation p.D973N 0.59 deleterious(0.01) benign(0.306) TCGA-C5-A1MF-01 7 66460333 66460333 C T SBDS Silent p.G24G 0.27 TCGA-C5-A1MF-01 7 95157220 95157220 G A ASB4 Missense_Mutation p.V195M 0.30 deleterious(0.03) benign(0.055) TCGA-C5-A1MF-01 7 98992156 98992156 G A ARPC1B 3'UTR 0.27 TCGA-C5-A1MF-01 7 99909547 99909547 C T SPDYE3 Missense_Mutation p.S240L 0.27 deleterious(0.03) benign(0.018) TCGA-C5-A1MF-01 8 145106962 145106962 C T OPLAH Missense_Mutation p.R1160H 0.36 tolerated(0.27) benign(0.052) TCGA-C5-A1MF-01 8 65494180 65494180 G A BHLHE22 Missense_Mutation p.R278Q 0.31 deleterious(0) possibly_damaging(0.819) TCGA-C5-A1MF-01 9 21440588 21440588 G A IFNA1 Missense_Mutation p.E28K 0.05 deleterious(0.03) benign(0.026) TCGA-C5-A1MF-01 9 91926203 91926203 G A CKS2 5'UTR 0.15 TCGA-C5-A1MF-01 X 100387418 100387418 C G CENPI Silent p.L481L 0.05 TCGA-C5-A1MF-01 X 107802363 107802363 C T COL4A5 Missense_Mutation p.P71S 0.08 unknown(0) TCGA-C5-A1MF-01 X 122745309 122745309 C T THOC2 Missense_Mutation p.G1579E 0.17 tolerated_low_confidence(0.21) benign(0.001) TCGA-C5-A1MF-01 X 123838977 123838977 A T TENM1 Missense_Mutation p.S301T 0.18 tolerated_low_confidence(0.11) benign(0.163) TCGA-C5-A1MF-01 X 129155081 129155081 C T BCORL1 Missense_Mutation p.P1188L 0.34 benign(0.229) TCGA-C5-A1MF-01 X 153582588 153582588 C T FLNA Missense_Mutation p.V1830M 0.23 deleterious(0) probably_damaging(0.92) TCGA-C5-A1MF-01 X 32509432 32509432 C T DMD Missense_Mutation p.E862K 0.23 benign(0.023) TCGA-C5-A1MF-01 X 71427938 71427938 G A ERCC6L Missense_Mutation p.L227F 0.25 deleterious(0.02) probably_damaging(0.944) TCGA-C5-A1MH-01 10 104160985 104160985 C T NFKB2 Missense_Mutation p.S707L 0.07 tolerated(0.21) benign(0.029) TCGA-C5-A1MH-01 10 105108522 105108522 G C PCGF6 Missense_Mutation p.P170A 0.09 deleterious(0) probably_damaging(0.945) TCGA-C5-A1MH-01 10 105792012 105792014 CTT - COL17A1 In_Frame_Del p.R1491del 0.19 TCGA-C5-A1MH-01 10 1070526 1070526 C T IDI2 Silent p.E46E 0.12 TCGA-C5-A1MH-01 10 121571450 121571450 C T INPP5F Silent p.L623L 0.08 TCGA-C5-A1MH-01 10 121658415 121658415 C G SEC23IP Missense_Mutation p.P214A 0.08 deleterious(0.05) benign(0.04) TCGA-C5-A1MH-01 10 124184411 124184411 G A PLEKHA1 Splice_Site p.X249_splice 0.09 TCGA-C5-A1MH-01 10 124596954 124596954 C G CUZD1 Missense_Mutation p.D189H 0.11 tolerated(0.07) benign(0.02) TCGA-C5-A1MH-01 10 127500852 127500852 C T UROS Missense_Mutation p.E84K 0.05 tolerated(1) benign(0.002) TCGA-C5-A1MH-01 10 127697055 127697055 C G FANK1 Missense_Mutation p.S262C 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A1MH-01 10 128193242 128193242 G A C10orf90 Missense_Mutation p.A176V 0.07 tolerated(0.35) benign(0.002) TCGA-C5-A1MH-01 10 14995991 14995991 G A DCLRE1C Nonsense_Mutation p.Q7* 0.16 TCGA-C5-A1MH-01 10 59976022 59976022 C T IPMK Missense_Mutation p.D144N 0.17 deleterious(0.03) possibly_damaging(0.905) TCGA-C5-A1MH-01 10 75525312 75525312 G A SEC24C Missense_Mutation p.R444H 0.12 deleterious(0.05) benign(0.438) TCGA-C5-A1MH-01 10 75567715 75567715 G C NDST2 Silent p.L144L 0.17 TCGA-C5-A1MH-01 10 89514391 89514391 G A ATAD1 3'UTR 0.18 TCGA-C5-A1MH-01 10 90773980 90773980 G A FAS Missense_Mutation p.E261K 0.10 deleterious(0.01) probably_damaging(0.961) TCGA-C5-A1MH-01 10 91353697 91353697 C G PANK1 Missense_Mutation p.E454Q 0.07 tolerated(0.15) probably_damaging(0.983) TCGA-C5-A1MH-01 10 91497810 91497810 C T KIF20B Missense_Mutation p.S1031F 0.12 deleterious(0) probably_damaging(0.996) TCGA-C5-A1MH-01 10 93757460 93757460 C T BTAF1 Silent p.F1204F 0.14 TCGA-C5-A1MH-01 10 94268606 94268606 G A IDE Silent p.L313L 0.07 TCGA-C5-A1MH-01 10 95088619 95088619 G A MYOF Nonsense_Mutation p.Q1678* 0.13 TCGA-C5-A1MH-01 10 97135751 97135751 C T SORBS1 Silent p.S572S 0.06 TCGA-C5-A1MH-01 11 108123635 108123635 G A ATM Missense_Mutation p.E632K 0.16 tolerated(0.32) benign(0.004) TCGA-C5-A1MH-01 11 108384244 108384244 G A EXPH5 Missense_Mutation p.H664Y 0.12 tolerated(0.08) benign(0.002) TCGA-C5-A1MH-01 11 113619050 113619050 C G ZW10 Missense_Mutation p.E340Q 0.14 tolerated(0.22) benign(0.056) TCGA-C5-A1MH-01 11 119045980 119045980 C G NLRX1 Missense_Mutation p.I556M 0.07 deleterious(0.01) benign(0.027) TCGA-C5-A1MH-01 11 124489625 124489625 G A PANX3 Missense_Mutation p.D325N 0.06 deleterious(0) probably_damaging(0.992) TCGA-C5-A1MH-01 11 28057890 28057890 C T KIF18A Missense_Mutation p.R757K 0.10 tolerated(0.72) benign(0.001) TCGA-C5-A1MH-01 11 3114754 3114754 C T OSBPL5 Intron 0.11 TCGA-C5-A1MH-01 11 31785081 31785081 G A ELP4 Intron 0.04 TCGA-C5-A1MH-01 11 397562 397562 C G PKP3 Nonsense_Mutation p.S323* 0.14 TCGA-C5-A1MH-01 11 47445656 47445656 C G PSMC3 Missense_Mutation p.D178H 0.09 deleterious(0.02) possibly_damaging(0.902) TCGA-C5-A1MH-01 11 47862037 47862037 C T NUP160 Missense_Mutation p.G140R 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-C5-A1MH-01 11 5173510 5173510 C T OR52A1 Silent p.G30G 0.08 TCGA-C5-A1MH-01 11 55322251 55322251 G A OR4C15 Missense_Mutation p.E157K 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.782) TCGA-C5-A1MH-01 11 55798595 55798595 G A OR5AS1 Missense_Mutation p.R234K 0.05 tolerated(0.08) benign(0.083) TCGA-C5-A1MH-01 11 58920959 58920959 G A FAM111A Missense_Mutation p.M606I 0.10 tolerated(0.41) benign(0) TCGA-C5-A1MH-01 11 6191508 6191508 G A OR52B2 Missense_Mutation p.P17S 0.08 deleterious(0.04) benign(0) TCGA-C5-A1MH-01 11 62296350 62296350 C G AHNAK Missense_Mutation p.E1847Q 0.05 possibly_damaging(0.607) TCGA-C5-A1MH-01 11 63991404 63991404 C T TRPT1 Missense_Mutation p.E238K 0.11 deleterious_low_confidence(0.04) benign(0.011) TCGA-C5-A1MH-01 11 66238754 66238754 G A PELI3 Missense_Mutation p.R89Q 0.11 tolerated(0.12) benign(0.411) TCGA-C5-A1MH-01 11 66605850 66605850 G C C11orf80 Missense_Mutation p.E561Q 0.22 deleterious(0.04) possibly_damaging(0.859) TCGA-C5-A1MH-01 11 67218801 67218801 C T GPR152 Silent p.P465P 0.23 TCGA-C5-A1MH-01 11 67225845 67225845 G C CABP4 Missense_Mutation p.D219H 0.14 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 11 77910692 77910692 C T USP35 Silent p.I286I 0.09 TCGA-C5-A1MH-01 11 78437208 78437208 T C TENM4 Missense_Mutation p.T1156A 0.14 tolerated(1) benign(0) TCGA-C5-A1MH-01 11 8122509 8122509 C T TUB Missense_Mutation p.S506F 0.09 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 11 9199895 9199895 G C DENND5A Missense_Mutation p.Q564E 0.10 deleterious(0.01) probably_damaging(0.977) TCGA-C5-A1MH-01 12 1017163 1017163 C T WNK1 Missense_Mutation p.S2265L 0.12 deleterious(0) possibly_damaging(0.78) TCGA-C5-A1MH-01 12 104378641 104378641 G C TDG Missense_Mutation p.E303Q 0.04 tolerated(0.58) benign(0.001) TCGA-C5-A1MH-01 12 105238306 105238306 G C SLC41A2 Missense_Mutation p.H494D 0.08 deleterious(0.04) possibly_damaging(0.903) TCGA-C5-A1MH-01 12 10777320 10777320 G C STYK1 Missense_Mutation p.Q286E 0.11 tolerated(0.43) benign(0.08) TCGA-C5-A1MH-01 12 109921666 109921666 G T UBE3B Missense_Mutation p.R54S 0.06 tolerated(0.41) benign(0.405) TCGA-C5-A1MH-01 12 11035240 11035240 C T PRH1 Missense_Mutation p.G53E 0.04 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-C5-A1MH-01 12 11339076 11339076 G C TAS2R42 Silent p.L156L 0.06 TCGA-C5-A1MH-01 12 129467662 129467662 C T GLT1D1 3'UTR 0.06 TCGA-C5-A1MH-01 12 129566467 129566467 G A TMEM132D Missense_Mutation p.A587V 0.12 tolerated(0.14) benign(0.049) TCGA-C5-A1MH-01 12 304436 304436 G A SLC6A12 Silent p.L462L 0.10 TCGA-C5-A1MH-01 12 32135918 32135918 C G KIAA1551 Missense_Mutation p.L677V 0.07 deleterious(0) probably_damaging(0.934) TCGA-C5-A1MH-01 12 431665 431665 G A KDM5A Nonsense_Mutation p.R782* 0.11 TCGA-C5-A1MH-01 12 45761520 45761520 C T ANO6 Nonsense_Mutation p.Q371* 0.06 TCGA-C5-A1MH-01 12 4737262 4737262 C T AKAP3 Missense_Mutation p.R269Q 0.18 tolerated(0.35) benign(0.046) TCGA-C5-A1MH-01 12 49088062 49088062 G C CCNT1 Missense_Mutation p.S312C 0.12 deleterious(0.03) possibly_damaging(0.885) TCGA-C5-A1MH-01 12 49496668 49496668 A G LMBR1L Splice_Site p.X232_splice 0.12 TCGA-C5-A1MH-01 12 50045026 50045026 G A FMNL3 Silent p.F574F 0.10 TCGA-C5-A1MH-01 12 53459594 53459594 G A SPRYD3 3'UTR 0.10 TCGA-C5-A1MH-01 12 53694019 53694019 G C C12orf10 Missense_Mutation p.R101P 0.10 tolerated(0.2) benign(0.001) TCGA-C5-A1MH-01 12 54109766 54109766 C T CALCOCO1 Silent p.Q357Q 0.10 TCGA-C5-A1MH-01 12 54428255 54428255 G A HOXC5 Missense_Mutation p.M216I 0.12 tolerated(0.06) benign(0) TCGA-C5-A1MH-01 12 55421139 55421139 G A NEUROD4 Missense_Mutation p.D306N 0.13 tolerated(0.12) benign(0.019) TCGA-C5-A1MH-01 12 56234572 56234572 G A MMP19 Silent p.F133F 0.07 TCGA-C5-A1MH-01 12 5687152 5687152 G C ANO2 Missense_Mutation p.S803C 0.11 tolerated(0.15) probably_damaging(0.983) TCGA-C5-A1MH-01 12 57140747 57140747 C T PRIM1 Missense_Mutation p.D111N 0.09 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MH-01 12 57642536 57642536 C T STAC3 Missense_Mutation p.E129K 0.07 deleterious(0.02) benign(0.257) TCGA-C5-A1MH-01 12 57975210 57975210 G A KIF5A Missense_Mutation p.R923Q 0.12 deleterious(0.01) possibly_damaging(0.46) TCGA-C5-A1MH-01 12 62949938 62949938 C A MON2 Silent p.I1125I 0.11 TCGA-C5-A1MH-01 12 7043362 7043362 G C ATN1 Missense_Mutation p.K17N 0.13 possibly_damaging(0.863) TCGA-C5-A1MH-01 12 80214673 80214673 G A PPP1R12A Missense_Mutation p.S332F 0.12 deleterious(0.04) possibly_damaging(0.542) TCGA-C5-A1MH-01 12 8330155 8330155 C T ZNF705A Silent p.F293F 0.06 TCGA-C5-A1MH-01 12 8673805 8673805 G A CLEC4D Missense_Mutation p.D196N 0.12 tolerated(0.14) benign(0.269) TCGA-C5-A1MH-01 13 103279418 103279418 G A TPP2 Missense_Mutation p.E281K 0.11 deleterious(0.01) benign(0.134) TCGA-C5-A1MH-01 13 113980315 113980315 C T GRTP1 Silent p.L218L 0.11 TCGA-C5-A1MH-01 13 31725797 31725797 T C HSPH1 Silent p.G204G 0.16 TCGA-C5-A1MH-01 13 46288426 46288426 G A SPERT Silent p.A422A 0.19 TCGA-C5-A1MH-01 13 53048161 53048161 G A CKAP2 Missense_Mutation p.E583K 0.08 tolerated(0.3) benign(0.011) TCGA-C5-A1MH-01 13 77754264 77754264 C G MYCBP2 Missense_Mutation p.E1673Q 0.09 possibly_damaging(0.717) TCGA-C5-A1MH-01 14 102900646 102900646 C T TECPR2 Nonsense_Mutation p.Q498* 0.13 TCGA-C5-A1MH-01 14 106967139 106967139 G A IGHV1-46 Silent p.V87V 0.09 TCGA-C5-A1MH-01 14 20585871 20585871 G A OR4K17 Missense_Mutation p.M102I 0.11 tolerated(0.43) benign(0.07) TCGA-C5-A1MH-01 14 21967206 21967206 C G METTL3 Missense_Mutation p.E532Q 0.05 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 14 23371090 23371090 G C RBM23 Missense_Mutation p.L417V 0.07 tolerated(0.26) benign(0.032) TCGA-C5-A1MH-01 14 31578645 31578645 C T HECTD1 Silent p.E2146E 0.14 TCGA-C5-A1MH-01 14 31578721 31578721 C T HECTD1 Missense_Mutation p.G2121E 0.17 tolerated(0.78) probably_damaging(0.996) TCGA-C5-A1MH-01 14 33014856 33014856 C G AKAP6 Missense_Mutation p.L333V 0.18 tolerated(0.46) benign(0.002) TCGA-C5-A1MH-01 14 39771449 39771449 C G CTAGE5 Nonsense_Mutation p.Y309* 0.16 TCGA-C5-A1MH-01 14 53098933 53098933 C G GPR137C Missense_Mutation p.S258C 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-C5-A1MH-01 14 57876233 57876233 G A NAA30 Silent p.%3D 0.32 TCGA-C5-A1MH-01 14 59792434 59792434 A G DAAM1 Missense_Mutation p.K348E 0.10 deleterious(0.01) unknown(0) TCGA-C5-A1MH-01 14 73730416 73730416 C T PAPLN Silent p.L902L 0.08 TCGA-C5-A1MH-01 14 73749139 73749139 C T NUMB Missense_Mutation p.E342K 0.12 deleterious(0.05) benign(0.14) TCGA-C5-A1MH-01 14 74358815 74358815 C T ZNF410 5'UTR 0.07 TCGA-C5-A1MH-01 14 74388889 74388889 C G ZNF410 Missense_Mutation p.S434C 0.09 deleterious(0) probably_damaging(0.997) TCGA-C5-A1MH-01 14 74409394 74409394 C T FAM161B Missense_Mutation p.R380H 0.06 deleterious(0.02) possibly_damaging(0.629) TCGA-C5-A1MH-01 14 78399610 78399610 C G ADCK1 Missense_Mutation p.S483C 0.11 tolerated(0.21) benign(0.005) TCGA-C5-A1MH-01 14 81610522 81610522 G A TSHR Missense_Mutation p.R707Q 0.06 deleterious(0.03) benign(0.082) TCGA-C5-A1MH-01 14 95574809 95574809 C T DICER1 Missense_Mutation p.R763K 0.16 tolerated(0.96) benign(0) TCGA-C5-A1MH-01 15 29346279 29346279 C G APBA2 Missense_Mutation p.H64Q 0.15 tolerated_low_confidence(0.22) benign(0.036) TCGA-C5-A1MH-01 15 31197287 31197287 G A FAN1 Missense_Mutation p.E141K 0.19 tolerated(0.06) benign(0.014) TCGA-C5-A1MH-01 15 41823344 41823344 C G RPAP1 Missense_Mutation p.E274Q 0.08 tolerated(0.12) benign(0.043) TCGA-C5-A1MH-01 15 41962081 41962081 G A MGA Missense_Mutation p.R330Q 0.08 tolerated(0.74) benign(0.001) TCGA-C5-A1MH-01 15 42651948 42651948 G C CAPN3 5'UTR 0.10 TCGA-C5-A1MH-01 15 43767874 43767874 G A TP53BP1 Missense_Mutation p.S325F 0.07 deleterious(0.05) possibly_damaging(0.828) TCGA-C5-A1MH-01 15 45398798 45398798 G A DUOX2 Nonsense_Mutation p.R625* 0.06 TCGA-C5-A1MH-01 15 50886709 50886709 G A TRPM7 Missense_Mutation p.P1131L 0.16 deleterious(0.02) possibly_damaging(0.902) TCGA-C5-A1MH-01 15 50903387 50903387 G C TRPM7 Nonsense_Mutation p.S728* 0.13 TCGA-C5-A1MH-01 15 64791779 64791779 C G ZNF609 Nonsense_Mutation p.S54* 0.11 TCGA-C5-A1MH-01 15 70959860 70959860 G C UACA Missense_Mutation p.H1055D 0.09 deleterious(0.03) benign(0.024) TCGA-C5-A1MH-01 15 70960836 70960836 G C UACA Silent p.L729L 0.08 TCGA-C5-A1MH-01 15 71549051 71549051 G A THSD4 Missense_Mutation p.E338K 0.09 deleterious(0) possibly_damaging(0.472) TCGA-C5-A1MH-01 15 72548856 72548856 G A PARP6 Missense_Mutation p.P359S 0.11 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 15 89825022 89825022 G C FANCI Missense_Mutation p.M513I 0.12 tolerated(0.08) benign(0.001) TCGA-C5-A1MH-01 16 14723469 14723469 C G PARN Missense_Mutation p.D28H 0.08 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 16 17202795 17202795 G A XYLT1 Silent p.L879L 0.14 TCGA-C5-A1MH-01 16 19492729 19492729 C G TMC5 Missense_Mutation p.Q769E 0.07 tolerated(0.08) benign(0.353) TCGA-C5-A1MH-01 16 22337138 22337138 C T POLR3E Nonsense_Mutation p.Q469* 0.11 TCGA-C5-A1MH-01 16 2812010 2812010 G A SRRM2 Missense_Mutation p.R494Q 0.14 unknown(0) TCGA-C5-A1MH-01 16 29814187 29814187 C G KIF22 Missense_Mutation p.L460V 0.07 tolerated(0.17) benign(0.009) TCGA-C5-A1MH-01 16 30724940 30724940 C G SRCAP Missense_Mutation p.R801G 0.13 unknown(0) TCGA-C5-A1MH-01 16 30779514 30779514 G C RNF40 Missense_Mutation p.E548Q 0.11 tolerated(0.24) benign(0.06) TCGA-C5-A1MH-01 16 31282346 31282346 C T ITGAM Missense_Mutation p.R167W 0.06 deleterious(0.01) possibly_damaging(0.608) TCGA-C5-A1MH-01 16 3349121 3349121 C G TIGD7 Missense_Mutation p.Q498H 0.13 tolerated(0.58) benign(0.001) TCGA-C5-A1MH-01 16 3349384 3349384 C T TIGD7 Missense_Mutation p.D411N 0.12 tolerated(0.16) benign(0.002) TCGA-C5-A1MH-01 16 3349549 3349549 C T TIGD7 Missense_Mutation p.E356K 0.12 tolerated(0.42) possibly_damaging(0.894) TCGA-C5-A1MH-01 16 3569980 3569980 G C CLUAP1 Missense_Mutation p.K219N 0.05 deleterious(0) probably_damaging(0.991) TCGA-C5-A1MH-01 16 56717982 56717982 C G MT1X 3'UTR 0.07 TCGA-C5-A1MH-01 16 57155594 57155594 C T CPNE2 Silent p.F263F 0.13 TCGA-C5-A1MH-01 16 57416625 57416625 C G CX3CL1 Missense_Mutation p.S292C 0.07 deleterious(0.01) possibly_damaging(0.832) TCGA-C5-A1MH-01 16 613438 613438 G A C16orf11 Silent p.E48E 0.08 TCGA-C5-A1MH-01 16 67401275 67401275 C T LRRC36 Silent p.T370T 0.03 TCGA-C5-A1MH-01 16 68936274 68936274 G A TANGO6 Missense_Mutation p.E512K 0.08 deleterious(0) possibly_damaging(0.63) TCGA-C5-A1MH-01 16 722267 722267 G C RHOT2 Missense_Mutation p.K403N 0.15 deleterious(0) probably_damaging(0.931) TCGA-C5-A1MH-01 16 74694992 74694992 G A RFWD3 Missense_Mutation p.S119L 0.09 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-C5-A1MH-01 16 75149147 75149147 G A LDHD Silent p.I92I 0.07 TCGA-C5-A1MH-01 16 81410830 81410830 C G GAN Missense_Mutation p.I503M 0.04 tolerated(0.48) benign(0.006) TCGA-C5-A1MH-01 16 84203648 84203648 G A DNAAF1 Missense_Mutation p.R405K 0.07 tolerated(0.91) benign(0.003) TCGA-C5-A1MH-01 16 84690971 84690971 G A KLHL36 Silent p.Q186Q 0.10 TCGA-C5-A1MH-01 16 87443876 87443876 G A ZCCHC14 3'UTR 0.05 TCGA-C5-A1MH-01 16 89882319 89882319 C G FANCA Missense_Mutation p.R52P 0.14 tolerated(0.07) possibly_damaging(0.453) TCGA-C5-A1MH-01 17 16722850 16722850 C G AC022596.6 RNA 0.07 TCGA-C5-A1MH-01 17 1703264 1703264 G A SMYD4 Missense_Mutation p.A475V 0.14 deleterious(0.02) possibly_damaging(0.686) TCGA-C5-A1MH-01 17 1703353 1703353 G C SMYD4 Silent p.L445L 0.14 TCGA-C5-A1MH-01 17 1703679 1703679 G C SMYD4 Missense_Mutation p.L337V 0.24 tolerated(0.08) possibly_damaging(0.855) TCGA-C5-A1MH-01 17 17701149 17701149 C T RAI1 Silent p.S1629S 0.17 TCGA-C5-A1MH-01 17 26518054 26518054 G C NLK Missense_Mutation p.R415T 0.09 deleterious(0) probably_damaging(0.981) TCGA-C5-A1MH-01 17 27244444 27244444 C G PHF12 Silent p.L331L 0.08 TCGA-C5-A1MH-01 17 27938969 27938969 G C ANKRD13B Missense_Mutation p.E349Q 0.10 tolerated(0.09) possibly_damaging(0.832) TCGA-C5-A1MH-01 17 27958302 27958302 C T SSH2 Missense_Mutation p.E1277K 0.10 deleterious_low_confidence(0) benign(0.012) TCGA-C5-A1MH-01 17 29111235 29111235 G C CRLF3 Missense_Mutation p.F433L 0.11 tolerated(0.21) benign(0.036) TCGA-C5-A1MH-01 17 33679437 33679437 G C SLFN11 Missense_Mutation p.L882V 0.08 deleterious(0.03) benign(0.181) TCGA-C5-A1MH-01 17 34233677 34233677 C G AC015849.16 RNA 0.24 TCGA-C5-A1MH-01 17 38320212 38320212 G A CASC3 Missense_Mutation p.E422K 0.07 tolerated_low_confidence(0.05) benign(0.304) TCGA-C5-A1MH-01 17 38711879 38711879 G C CCR7 Missense_Mutation p.I84M 0.13 deleterious(0.03) possibly_damaging(0.739) TCGA-C5-A1MH-01 17 38788620 38788620 C G SMARCE1 Splice_Site p.X181_splice 0.31 TCGA-C5-A1MH-01 17 39994369 39994369 C G KLHL10 Missense_Mutation p.S62C 0.07 tolerated(0.06) possibly_damaging(0.84) TCGA-C5-A1MH-01 17 40004567 40004567 C T KLHL10 3'UTR 0.10 TCGA-C5-A1MH-01 17 40705355 40705355 C T HSD17B1 Intron 0.17 TCGA-C5-A1MH-01 17 42089329 42089329 G A TMEM101 Silent p.F247F 0.18 TCGA-C5-A1MH-01 17 43173589 43173589 G C NMT1 Missense_Mutation p.E178Q 0.04 tolerated(0.1) benign(0.183) TCGA-C5-A1MH-01 17 4701366 4701366 G C PSMB6 Silent p.G165G 0.12 TCGA-C5-A1MH-01 17 48735556 48735556 G C ABCC3 Missense_Mutation p.K200N 0.10 tolerated(0.49) benign(0.14) TCGA-C5-A1MH-01 17 53798348 53798348 T G TMEM100 Missense_Mutation p.E28D 0.08 tolerated(0.58) benign(0.016) TCGA-C5-A1MH-01 17 57290613 57290613 G C SMG8 Missense_Mutation p.G810A 0.18 tolerated(0.23) benign(0.018) TCGA-C5-A1MH-01 17 57647978 57647978 G A DHX40 Missense_Mutation p.G127E 0.09 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 17 60030396 60030396 G A MED13 Missense_Mutation p.P2016L 0.09 tolerated(0.07) benign(0.26) TCGA-C5-A1MH-01 17 62043880 62043880 G C SCN4A Missense_Mutation p.S354C 0.11 deleterious(0) benign(0.221) TCGA-C5-A1MH-01 17 63010459 63010459 G C GNA13 Missense_Mutation p.I350M 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A1MH-01 17 650372 650372 G A GEMIN4 Missense_Mutation p.S304L 0.11 tolerated(0.08) probably_damaging(0.946) TCGA-C5-A1MH-01 17 65717522 65717522 C G NOL11 Nonsense_Mutation p.S114* 0.16 TCGA-C5-A1MH-01 17 7216057 7216057 G A GPS2 3'UTR 0.11 TCGA-C5-A1MH-01 17 72285751 72285751 G C DNAI2 Missense_Mutation p.K162N 0.12 deleterious(0.01) benign(0.094) TCGA-C5-A1MH-01 17 74005070 74005070 C G EVPL Missense_Mutation p.E1406Q 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-C5-A1MH-01 17 74921144 74921144 G A MGAT5B Missense_Mutation p.M385I 0.10 tolerated(0.15) benign(0.426) TCGA-C5-A1MH-01 17 80790328 80790328 C G ZNF750 Translation_Start_Site p.M1? 0.43 deleterious(0) probably_damaging(0.986) TCGA-C5-A1MH-01 17 953287 953287 C G ABR Intron 0.14 TCGA-C5-A1MH-01 18 12830990 12830990 C G PTPN2 Missense_Mutation p.Q104H 0.13 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 18 14105524 14105524 G A ZNF519 Nonsense_Mutation p.Q339* 0.06 TCGA-C5-A1MH-01 18 19995686 19995686 A G CTAGE1 Missense_Mutation p.F697L 0.13 tolerated(0.06) benign(0.012) TCGA-C5-A1MH-01 18 21492846 21492846 G A LAMA3 Splice_Site p.X2443_splice 0.14 TCGA-C5-A1MH-01 18 2616481 2616481 G C NDC80 Missense_Mutation p.E613Q 0.09 deleterious(0.02) possibly_damaging(0.588) TCGA-C5-A1MH-01 18 30350039 30350039 G A KLHL14 Silent p.L172L 0.14 TCGA-C5-A1MH-01 18 48703244 48703244 G A MEX3C Missense_Mutation p.S486F 0.04 tolerated(0.06) possibly_damaging(0.839) TCGA-C5-A1MH-01 18 54424343 54424343 G C WDR7 Missense_Mutation p.R840T 0.05 deleterious(0.02) probably_damaging(0.996) TCGA-C5-A1MH-01 18 72353008 72353008 C G ZNF407 Missense_Mutation p.Q1578E 0.05 deleterious(0.01) possibly_damaging(0.758) TCGA-C5-A1MH-01 18 74092249 74092249 C T ZNF516 Silent p.P607P 0.12 TCGA-C5-A1MH-01 18 9258686 9258686 G A ANKRD12 Silent p.E1807E 0.16 TCGA-C5-A1MH-01 19 10112470 10112470 T C COL5A3 Missense_Mutation p.T313A 0.09 unknown(0) TCGA-C5-A1MH-01 19 10260212 10260212 C T DNMT1 Missense_Mutation p.E835K 0.06 deleterious(0) possibly_damaging(0.905) TCGA-C5-A1MH-01 19 1042790 1042790 A G ABCA7 Missense_Mutation p.S182G 0.07 tolerated(0.09) benign(0.004) TCGA-C5-A1MH-01 19 10741983 10741983 C T SLC44A2 Silent p.L121L 0.13 TCGA-C5-A1MH-01 19 11565683 11565683 C T ELAVL3 Silent p.S254S 0.13 TCGA-C5-A1MH-01 19 14043476 14043476 C T PODNL1 3'UTR 0.10 TCGA-C5-A1MH-01 19 14073987 14073987 C T RFX1 Missense_Mutation p.E891K 0.15 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 19 17768894 17768894 C A UNC13A Missense_Mutation p.E248D 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-C5-A1MH-01 19 17919158 17919158 C G B3GNT3 Missense_Mutation p.S181C 0.12 deleterious(0) probably_damaging(0.975) TCGA-C5-A1MH-01 19 19231571 19231571 C G TMEM161A Intron 0.14 TCGA-C5-A1MH-01 19 2717297 2717297 G A DIRAS1 Missense_Mutation p.R170C 0.07 deleterious(0) possibly_damaging(0.493) TCGA-C5-A1MH-01 19 34791603 34791603 C T KIAA0355 Silent p.D75D 0.17 TCGA-C5-A1MH-01 19 36674105 36674105 C G ZNF565 Missense_Mutation p.E255Q 0.07 tolerated(0.09) benign(0.016) TCGA-C5-A1MH-01 19 37904385 37904385 G C ZNF569 Missense_Mutation p.S392C 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-C5-A1MH-01 19 38991620 38991620 C A RYR1 Nonsense_Mutation p.S2535* 0.16 TCGA-C5-A1MH-01 19 39798838 39798838 G A LRFN1 Missense_Mutation p.S584L 0.12 deleterious(0) possibly_damaging(0.781) TCGA-C5-A1MH-01 19 39898406 39898406 C G ZFP36 Missense_Mutation p.D22E 0.05 tolerated_low_confidence(0.68) benign(0.01) TCGA-C5-A1MH-01 19 40580980 40580980 G A ZNF780A Missense_Mutation p.H458Y 0.08 tolerated(1) possibly_damaging(0.589) TCGA-C5-A1MH-01 19 40904465 40904465 C T PRX Intron 0.14 TCGA-C5-A1MH-01 19 44680964 44680964 C T ZNF226 Missense_Mutation p.H517Y 0.11 tolerated(1) probably_damaging(0.97) TCGA-C5-A1MH-01 19 44740722 44740722 G A ZNF227 Silent p.E713E 0.09 TCGA-C5-A1MH-01 19 45206685 45206685 A G CEACAM16 Missense_Mutation p.D35G 0.10 tolerated(0.12) probably_damaging(0.989) TCGA-C5-A1MH-01 19 45525444 45525444 G A RELB Missense_Mutation p.R213Q 0.11 tolerated(0.22) benign(0.304) TCGA-C5-A1MH-01 19 46307697 46307697 G C RSPH6A Missense_Mutation p.S489W 0.11 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 19 46388496 46388496 C G IRF2BP1 Silent p.L179L 0.14 TCGA-C5-A1MH-01 19 4651990 4651990 G C TNFAIP8L1 Missense_Mutation p.E37Q 0.15 tolerated(0.07) benign(0.008) TCGA-C5-A1MH-01 19 47422775 47422775 G C ARHGAP35 Silent p.V281V 0.12 TCGA-C5-A1MH-01 19 48253494 48253494 C T GLTSCR2 Missense_Mutation p.R117W 0.08 deleterious(0.02) benign(0.224) TCGA-C5-A1MH-01 19 48892949 48892949 G C KDELR1 Missense_Mutation p.S71C 0.08 deleterious(0) possibly_damaging(0.784) TCGA-C5-A1MH-01 19 49949850 49949850 G A PIH1D1 Silent p.I263I 0.16 TCGA-C5-A1MH-01 19 50760689 50760689 C G MYH14 Silent p.L726L 0.22 TCGA-C5-A1MH-01 19 5135454 5135454 G A KDM4B Silent p.E730E 0.13 TCGA-C5-A1MH-01 19 51471362 51471362 G A KLK6 5'UTR 0.18 TCGA-C5-A1MH-01 19 53209437 53209437 C T ZNF611 Missense_Mutation p.E291K 0.05 deleterious(0.04) probably_damaging(0.994) TCGA-C5-A1MH-01 19 53644231 53644231 C T ZNF347 Missense_Mutation p.R618Q 0.09 tolerated(0.06) benign(0.39) TCGA-C5-A1MH-01 19 55677762 55677762 G C DNAAF3 Missense_Mutation p.S54C 0.13 deleterious(0.02) probably_damaging(0.986) TCGA-C5-A1MH-01 19 56477742 56477742 C T NLRP8 Missense_Mutation p.L793F 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-C5-A1MH-01 19 56701945 56701945 C T ZSCAN5B Splice_Site p.X247_splice 0.09 TCGA-C5-A1MH-01 19 57133525 57133525 C T ZNF71 Silent p.R290R 0.09 TCGA-C5-A1MH-01 19 58187739 58187739 G A ZSCAN4 Missense_Mutation p.E76K 0.07 deleterious(0.03) probably_damaging(0.987) TCGA-C5-A1MH-01 19 58490489 58490489 G A ZNF606 Missense_Mutation p.S520L 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A1MH-01 19 58596539 58596539 G A ZSCAN18 Missense_Mutation p.S405L 0.28 tolerated(0.3) benign(0.005) TCGA-C5-A1MH-01 19 58640056 58640056 G A ZNF329 Missense_Mutation p.S272L 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-C5-A1MH-01 19 6183146 6183146 C T ACSBG2 Silent p.I395I 0.11 TCGA-C5-A1MH-01 19 6454376 6454376 C G SLC25A23 Missense_Mutation p.K251N 0.12 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 19 6495300 6495300 C T TUBB4A Missense_Mutation p.D404N 0.08 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-C5-A1MH-01 19 8620554 8620554 C T MYO1F Missense_Mutation p.D44N 0.16 tolerated(0.11) probably_damaging(0.918) TCGA-C5-A1MH-01 19 8660996 8660996 C T ADAMTS10 Nonsense_Mutation p.W433* 0.08 TCGA-C5-A1MH-01 19 9066336 9066336 G C MUC16 Missense_Mutation p.S7037C 0.06 unknown(0) TCGA-C5-A1MH-01 19 9806769 9806769 C T ZNF812 Splice_Site p.X9_splice 0.06 TCGA-C5-A1MH-01 1 10035738 10035738 C T NMNAT1 Silent p.I68I 0.09 TCGA-C5-A1MH-01 1 101200256 101200256 G A VCAM1 Missense_Mutation p.G664E 0.09 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 1 110050944 110050944 C T AMIGO1 Silent p.L197L 0.06 TCGA-C5-A1MH-01 1 111824231 111824231 G A CHIAP2 RNA 0.15 TCGA-C5-A1MH-01 1 112329586 112329586 C G KCND3 Missense_Mutation p.D417H 0.09 deleterious(0) possibly_damaging(0.861) TCGA-C5-A1MH-01 1 112525146 112525146 C T KCND3 Missense_Mutation p.S68N 0.06 tolerated(0.09) benign(0.17) TCGA-C5-A1MH-01 1 113236732 113236732 C T MOV10 Silent p.I411I 0.09 TCGA-C5-A1MH-01 1 113633937 113633937 C G LRIG2 Intron 0.08 TCGA-C5-A1MH-01 1 11561451 11561451 G A PTCHD2 Silent p.G134G 0.13 TCGA-C5-A1MH-01 1 117911031 117911031 C T MAN1A2 Missense_Mutation p.P76S 0.33 tolerated(0.06) benign(0.109) TCGA-C5-A1MH-01 1 11861220 11861220 C T MTHFR Missense_Mutation p.G158E 0.07 deleterious(0) probably_damaging(0.987) TCGA-C5-A1MH-01 1 12342893 12342893 C T VPS13D Silent p.L1578L 0.09 TCGA-C5-A1MH-01 1 1309502 1309502 G C AURKAIP1 Missense_Mutation p.Q126E 0.09 tolerated(0.24) benign(0.093) TCGA-C5-A1MH-01 1 1469407 1469407 G A ATAD3A Silent p.L620L 0.10 TCGA-C5-A1MH-01 1 150203003 150203003 G A ANP32E Missense_Mutation p.S77F 0.24 tolerated(0.16) probably_damaging(0.989) TCGA-C5-A1MH-01 1 151664974 151664974 G C SNX27 Missense_Mutation p.D435H 0.09 deleterious(0) probably_damaging(0.972) TCGA-C5-A1MH-01 1 151783893 151783893 C G RORC Missense_Mutation p.E435Q 0.17 deleterious(0) possibly_damaging(0.489) TCGA-C5-A1MH-01 1 152281453 152281453 G C FLG Missense_Mutation p.S1970C 0.05 possibly_damaging(0.7) TCGA-C5-A1MH-01 1 152282510 152282510 G T FLG Missense_Mutation p.H1618N 0.08 benign(0.107) TCGA-C5-A1MH-01 1 154098850 154098850 C T NUP210L Silent p.L425L 0.09 TCGA-C5-A1MH-01 1 154112352 154112352 C G NUP210L Missense_Mutation p.D215H 0.05 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 1 158724677 158724677 G A OR6K6 Silent p.Q24Q 0.13 TCGA-C5-A1MH-01 1 158912082 158912082 G C PYHIN1 Missense_Mutation p.E299Q 0.07 tolerated(0.18) benign(0.007) TCGA-C5-A1MH-01 1 158946594 158946594 G C PYHIN1 3'UTR 0.15 TCGA-C5-A1MH-01 1 159175724 159175724 C A DARC Silent p.L167L 0.11 TCGA-C5-A1MH-01 1 159683846 159683846 G A CRP Silent p.L48L 0.06 TCGA-C5-A1MH-01 1 160319428 160319428 C T NCSTN Missense_Mutation p.S135F 0.06 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 1 162824639 162824639 C G C1orf110 Missense_Mutation p.E275D 0.10 deleterious(0) possibly_damaging(0.801) TCGA-C5-A1MH-01 1 16356492 16356492 C G CLCNKA Missense_Mutation p.L444V 0.08 tolerated(0.43) benign(0.019) TCGA-C5-A1MH-01 1 16525135 16525135 C T ARHGEF19 Missense_Mutation p.E786K 0.06 deleterious(0) probably_damaging(0.997) TCGA-C5-A1MH-01 1 166891971 166891971 C T ILDR2 Missense_Mutation p.R357K 0.18 tolerated(0.05) probably_damaging(0.989) TCGA-C5-A1MH-01 1 172557994 172557994 G T SUCO Nonsense_Mutation p.E585* 0.27 TCGA-C5-A1MH-01 1 17318248 17318248 G A ATP13A2 Silent p.I744I 0.05 TCGA-C5-A1MH-01 1 173842618 173842618 G A ZBTB37 Missense_Mutation p.G313S 0.12 tolerated(0.48) benign(0.018) TCGA-C5-A1MH-01 1 181708285 181708285 G T CACNA1E Missense_Mutation p.M1205I 0.13 tolerated(0.11) benign(0.284) TCGA-C5-A1MH-01 1 181767715 181767715 C T CACNA1E Silent p.S2229S 0.12 TCGA-C5-A1MH-01 1 18703404 18703404 C T IGSF21 Silent p.A404A 0.22 TCGA-C5-A1MH-01 1 192628603 192628603 G C RGS13 Missense_Mutation p.E144Q 0.09 tolerated(0.24) possibly_damaging(0.533) TCGA-C5-A1MH-01 1 19549948 19549948 G C EMC1 Missense_Mutation p.S773C 0.09 tolerated(0.23) benign(0.022) TCGA-C5-A1MH-01 1 198668784 198668784 C T PTPRC Silent p.S130S 0.06 TCGA-C5-A1MH-01 1 201981202 201981202 G A ELF3 Missense_Mutation p.R94Q 0.09 tolerated(0.31) benign(0.161) TCGA-C5-A1MH-01 1 210001378 210001378 C T DIEXF 5'UTR 0.17 TCGA-C5-A1MH-01 1 211280693 211280693 G A KCNH1 Nonsense_Mutation p.Q36* 0.09 TCGA-C5-A1MH-01 1 212515594 212515594 G A PPP2R5A Missense_Mutation p.R182Q 0.09 tolerated(0.05) possibly_damaging(0.523) TCGA-C5-A1MH-01 1 214816097 214816097 C T CENPF Silent p.L1472L 0.27 TCGA-C5-A1MH-01 1 217842410 217842410 T A SPATA17 Missense_Mutation p.N92K 0.04 deleterious(0) probably_damaging(0.928) TCGA-C5-A1MH-01 1 220363455 220363455 G A RAB3GAP2 Silent p.H555H 0.10 TCGA-C5-A1MH-01 1 220369645 220369645 G C RAB3GAP2 Missense_Mutation p.Q303E 0.27 tolerated(0.22) possibly_damaging(0.675) TCGA-C5-A1MH-01 1 220384325 220384325 G C RAB3GAP2 Missense_Mutation p.L136V 0.10 tolerated(0.07) benign(0.272) TCGA-C5-A1MH-01 1 220835472 220835472 C G MARK1 Missense_Mutation p.N784K 0.06 deleterious(0) probably_damaging(0.955) TCGA-C5-A1MH-01 1 22168565 22168565 G A HSPG2 Silent p.F3041F 0.26 TCGA-C5-A1MH-01 1 224345361 224345361 G A FBXO28 Silent p.Q340Q 0.05 TCGA-C5-A1MH-01 1 22835108 22835108 C T ZBTB40 Missense_Mutation p.S528F 0.06 deleterious(0) unknown(0) TCGA-C5-A1MH-01 1 228487765 228487765 C G OBSCN Missense_Mutation p.R4553G 0.22 possibly_damaging(0.904) TCGA-C5-A1MH-01 1 232943152 232943152 G A MAP10 Missense_Mutation p.D795N 0.08 tolerated(0.35) benign(0.042) TCGA-C5-A1MH-01 1 233394328 233394328 G C PCNXL2 Nonsense_Mutation p.S427* 0.07 TCGA-C5-A1MH-01 1 234596009 234596009 G A TARBP1 Silent p.L511L 0.07 TCGA-C5-A1MH-01 1 235944340 235944340 G C LYST Nonsense_Mutation p.S1680* 0.14 TCGA-C5-A1MH-01 1 23688744 23688744 G A ZNF436 Silent p.L377L 0.06 TCGA-C5-A1MH-01 1 242253408 242253408 A C PLD5 Missense_Mutation p.N453K 0.06 deleterious(0.02) possibly_damaging(0.521) TCGA-C5-A1MH-01 1 242287829 242287829 C G PLD5 Missense_Mutation p.D292H 0.06 deleterious(0.01) possibly_damaging(0.878) TCGA-C5-A1MH-01 1 243579062 243579062 C T SDCCAG8 Nonsense_Mutation p.Q559* 0.24 TCGA-C5-A1MH-01 1 248202316 248202316 C T OR2L2 Silent p.F249F 0.23 TCGA-C5-A1MH-01 1 24857861 24857861 C G RCAN3 Missense_Mutation p.L117V 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-C5-A1MH-01 1 27226681 27226681 C T GPATCH3 Missense_Mutation p.D85N 0.07 tolerated(0.24) benign(0.01) TCGA-C5-A1MH-01 1 27332842 27332842 G A FAM46B Missense_Mutation p.R291W 0.24 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 1 28285127 28285127 C T SMPDL3B Silent p.I382I 0.07 TCGA-C5-A1MH-01 1 28661064 28661064 C T MED18 Silent p.L70L 0.10 TCGA-C5-A1MH-01 1 28661335 28661335 G A MED18 Missense_Mutation p.E161K 0.11 deleterious(0.01) possibly_damaging(0.903) TCGA-C5-A1MH-01 1 31409541 31409541 C G PUM1 Missense_Mutation p.Q1128H 0.11 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 1 35320639 35320639 C T SMIM12 3'UTR 0.07 TCGA-C5-A1MH-01 1 36820970 36820970 C T STK40 Missense_Mutation p.R136H 0.05 deleterious(0) probably_damaging(0.996) TCGA-C5-A1MH-01 1 37346292 37346292 C G GRIK3 Missense_Mutation p.D165H 0.03 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A1MH-01 1 38274699 38274699 G C C1orf122 Missense_Mutation p.R96T 0.06 deleterious_low_confidence(0.01) benign(0.402) TCGA-C5-A1MH-01 1 40033119 40033119 C G PABPC4 Intron 0.08 TCGA-C5-A1MH-01 1 40961552 40961552 G A ZFP69 Missense_Mutation p.E468K 0.09 tolerated(0.16) possibly_damaging(0.872) TCGA-C5-A1MH-01 1 41475253 41475253 C G CTPS1 Silent p.L561L 0.06 TCGA-C5-A1MH-01 1 43395575 43395575 G C SLC2A1 Missense_Mutation p.I216M 0.07 deleterious(0) possibly_damaging(0.851) TCGA-C5-A1MH-01 1 45223226 45223226 A C KIF2C Splice_Site p.X326_splice 0.30 TCGA-C5-A1MH-01 1 45271329 45271329 C T PLK3 Silent p.L640L 0.08 TCGA-C5-A1MH-01 1 46669217 46669217 C T LURAP1 Missense_Mutation p.S40F 0.07 deleterious(0.03) possibly_damaging(0.549) TCGA-C5-A1MH-01 1 52825770 52825770 G C CC2D1B Missense_Mutation p.P247A 0.13 tolerated(0.16) benign(0.005) TCGA-C5-A1MH-01 1 54238061 54238061 G A NDC1 Silent p.F634F 0.09 TCGA-C5-A1MH-01 1 56990047 56990047 C A PPAP2B Missense_Mutation p.L159F 0.12 deleterious(0.01) probably_damaging(0.973) TCGA-C5-A1MH-01 1 57252870 57252870 C G C1orf168 Missense_Mutation p.E311Q 0.11 deleterious(0.01) benign(0.269) TCGA-C5-A1MH-01 1 60312796 60312796 G C HOOK1 Missense_Mutation p.D290H 0.06 deleterious(0.04) possibly_damaging(0.884) TCGA-C5-A1MH-01 1 6504554 6504554 G A ESPN Missense_Mutation p.R335H 0.17 deleterious(0.02) benign(0.028) TCGA-C5-A1MH-01 1 65854988 65854988 C T DNAJC6 Nonsense_Mutation p.Q415* 0.09 TCGA-C5-A1MH-01 1 85624862 85624862 C A SYDE2 Silent p.L1052L 0.08 TCGA-C5-A1MH-01 1 89844114 89844114 G C GBP6 Missense_Mutation p.L189F 0.07 tolerated(0.07) benign(0.33) TCGA-C5-A1MH-01 1 92508477 92508477 C T EPHX4 Nonsense_Mutation p.R139* 0.08 TCGA-C5-A1MH-01 1 93683346 93683346 G A CCDC18 Missense_Mutation p.E681K 0.07 tolerated(0.18) benign(0.119) TCGA-C5-A1MH-01 20 16360398 16360398 C T KIF16B Missense_Mutation p.R750K 0.04 deleterious(0.03) possibly_damaging(0.82) TCGA-C5-A1MH-01 20 30232672 30232672 C T COX4I2 Missense_Mutation p.R161C 0.15 deleterious(0.01) possibly_damaging(0.79) TCGA-C5-A1MH-01 20 3210347 3210347 G C SLC4A11 Nonsense_Mutation p.S565* 0.14 TCGA-C5-A1MH-01 20 35515883 35515883 C G TLDC2 Missense_Mutation p.S155C 0.15 deleterious(0.03) probably_damaging(0.954) TCGA-C5-A1MH-01 20 36640989 36640989 G A TTI1 Silent p.L410L 0.10 TCGA-C5-A1MH-01 20 40116320 40116320 C G CHD6 Silent p.L662L 0.09 TCGA-C5-A1MH-01 20 47274692 47274692 C G PREX1 Missense_Mutation p.Q652H 0.15 deleterious(0.03) benign(0.144) TCGA-C5-A1MH-01 20 47587889 47587889 G C ARFGEF2 Missense_Mutation p.E475Q 0.10 deleterious(0.03) possibly_damaging(0.566) TCGA-C5-A1MH-01 20 55099992 55099992 G T FAM209A Missense_Mutation p.R43L 0.11 tolerated(0.17) probably_damaging(0.988) TCGA-C5-A1MH-01 20 62577046 62577046 G C UCKL1 Missense_Mutation p.I204M 0.10 deleterious(0) probably_damaging(0.981) TCGA-C5-A1MH-01 20 7920973 7920973 C T HAO1 Missense_Mutation p.D33N 0.10 tolerated(0.07) benign(0.026) TCGA-C5-A1MH-01 21 32598171 32598171 G A TIAM1 Silent p.L560L 0.05 TCGA-C5-A1MH-01 21 34969645 34969645 C T CRYZL1 Missense_Mutation p.D247N 0.10 deleterious(0) possibly_damaging(0.895) TCGA-C5-A1MH-01 21 40570985 40570985 C T BRWD1 Missense_Mutation p.S1786N 0.15 tolerated_low_confidence(0.4) benign(0.002) TCGA-C5-A1MH-01 21 43411094 43411094 G A ZBTB21 Silent p.I1037I 0.09 TCGA-C5-A1MH-01 21 45548178 45548178 G A PWP2 Missense_Mutation p.E804K 0.06 tolerated(0.75) benign(0.042) TCGA-C5-A1MH-01 21 47545731 47545731 G C COL6A2 Missense_Mutation p.E668Q 0.12 tolerated(0.19) probably_damaging(0.916) TCGA-C5-A1MH-01 21 47704270 47704270 C T MCM3AP Missense_Mutation p.D311N 0.07 tolerated(0.07) possibly_damaging(0.798) TCGA-C5-A1MH-01 22 17072424 17072424 G A CCT8L2 Silent p.L339L 0.07 TCGA-C5-A1MH-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.14 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 22 22556259 22556259 C T IGLV11-55 Nonsense_Mutation p.Q25* 0.10 TCGA-C5-A1MH-01 22 26830049 26830049 C G ASPHD2 Silent p.L156L 0.11 TCGA-C5-A1MH-01 22 30867929 30867929 C G SEC14L3 Missense_Mutation p.G6A 0.07 deleterious(0.02) possibly_damaging(0.857) TCGA-C5-A1MH-01 22 31740573 31740573 G C PATZ1 Missense_Mutation p.S339C 0.12 deleterious(0.01) possibly_damaging(0.905) TCGA-C5-A1MH-01 22 32756345 32756345 C T RFPL3 Silent p.A160A 0.06 TCGA-C5-A1MH-01 22 36155971 36155971 C T RBFOX2 Missense_Mutation p.R358Q 0.14 probably_damaging(0.987) TCGA-C5-A1MH-01 22 36684327 36684327 C T MYH9 Missense_Mutation p.E1635K 0.10 benign(0.417) TCGA-C5-A1MH-01 22 36696987 36696987 G T MYH9 Silent p.I916I 0.09 TCGA-C5-A1MH-01 22 37387199 37387199 G C TEX33 3'UTR 0.09 TCGA-C5-A1MH-01 22 40804696 40804697 - T SGSM3 Frame_Shift_Ins p.R618Qfs*4 0.09 TCGA-C5-A1MH-01 22 41215266 41215266 C G SLC25A17 5'UTR 0.09 TCGA-C5-A1MH-01 22 41257650 41257650 C G DNAJB7 Missense_Mutation p.E117Q 0.07 deleterious(0.01) possibly_damaging(0.782) TCGA-C5-A1MH-01 22 41525927 41525927 C G EP300 Nonsense_Mutation p.S401* 0.13 TCGA-C5-A1MH-01 22 42463190 42463190 C G NAGA Missense_Mutation p.Q143H 0.07 deleterious(0.03) benign(0.03) TCGA-C5-A1MH-01 22 42607402 42607402 G A TCF20 Missense_Mutation p.H1304Y 0.20 benign(0.162) TCGA-C5-A1MH-01 22 46712238 46712238 C T GTSE1 Missense_Mutation p.S454F 0.10 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 22 50564699 50564699 G C MOV10L1 Missense_Mutation p.E606Q 0.12 deleterious(0.04) possibly_damaging(0.696) TCGA-C5-A1MH-01 2 100915696 100915696 G A LONRF2 Silent p.L451L 0.13 TCGA-C5-A1MH-01 2 101905511 101905511 C T RNF149 Missense_Mutation p.D263N 0.08 tolerated(0.07) benign(0.093) TCGA-C5-A1MH-01 2 10583644 10583644 G C ODC1 Missense_Mutation p.S213C 0.08 deleterious(0) probably_damaging(0.928) TCGA-C5-A1MH-01 2 108487596 108487596 G C RGPD4 Missense_Mutation p.E1046Q 0.12 deleterious(0.01) possibly_damaging(0.907) TCGA-C5-A1MH-01 2 11348006 11348006 C A ROCK2 Nonsense_Mutation p.E799* 0.08 TCGA-C5-A1MH-01 2 120658344 120658344 G A PTPN4 Silent p.L242L 0.17 TCGA-C5-A1MH-01 2 128262290 128262290 G A IWS1 Missense_Mutation p.L397F 0.14 deleterious(0.04) probably_damaging(0.997) TCGA-C5-A1MH-01 2 128394377 128394377 C G MYO7B Silent p.L2046L 0.09 TCGA-C5-A1MH-01 2 135756556 135756556 G A MAP3K19 Missense_Mutation p.S109L 0.20 tolerated(0.14) benign(0.01) TCGA-C5-A1MH-01 2 139326585 139326585 C T SPOPL Nonsense_Mutation p.R372* 0.14 TCGA-C5-A1MH-01 2 159166127 159166127 G A CCDC148 Nonsense_Mutation p.Q310* 0.18 TCGA-C5-A1MH-01 2 161143486 161143486 C G RBMS1 Silent p.V250V 0.07 TCGA-C5-A1MH-01 2 166245843 166245843 G A SCN2A Missense_Mutation p.D1843N 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1MH-01 2 178098900 178098900 C - NFE2L2 Frame_Shift_Del p.E49Kfs*28 0.14 TCGA-C5-A1MH-01 2 178534241 178534241 C G PDE11A Missense_Mutation p.E848Q 0.05 tolerated(0.06) benign(0.096) TCGA-C5-A1MH-01 2 179425302 179425302 A G TTN Silent p.N28519N 0.23 TCGA-C5-A1MH-01 2 179466088 179466088 C T TTN Missense_Mutation p.E18546K 0.11 TCGA-C5-A1MH-01 2 191931242 191931242 C T STAT4 Splice_Site p.X182_splice 0.13 TCGA-C5-A1MH-01 2 204161618 204161618 C G CYP20A1 Nonsense_Mutation p.S459* 0.12 TCGA-C5-A1MH-01 2 207945834 207945834 C T KLF7 3'UTR 0.13 TCGA-C5-A1MH-01 2 208477992 208477992 G C METTL21A Missense_Mutation p.I145M 0.09 deleterious(0) probably_damaging(0.983) TCGA-C5-A1MH-01 2 213872482 213872482 C A IKZF2 Nonsense_Mutation p.E395* 0.13 TCGA-C5-A1MH-01 2 219362850 219362850 C T USP37 Missense_Mutation p.M352I 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1MH-01 2 219894307 219894307 C G CCDC108 Missense_Mutation p.E490Q 0.23 tolerated(0.15) benign(0.234) TCGA-C5-A1MH-01 2 233322739 233322739 G C ALPI Missense_Mutation p.E296D 0.09 tolerated(0.37) benign(0.009) TCGA-C5-A1MH-01 2 233709239 233709239 G A GIGYF2 Missense_Mutation p.G1108E 0.15 unknown(0) TCGA-C5-A1MH-01 2 240981423 240981423 G A PRR21 Missense_Mutation p.S326L 0.10 tolerated_low_confidence(0.2) unknown(0) TCGA-C5-A1MH-01 2 25966752 25966752 G C ASXL2 Silent p.V818V 0.05 TCGA-C5-A1MH-01 2 26863411 26863411 C T CIB4 Missense_Mutation p.E27K 0.05 deleterious(0.03) possibly_damaging(0.613) TCGA-C5-A1MH-01 2 27590321 27590321 C T EIF2B4 Intron 0.08 TCGA-C5-A1MH-01 2 27804955 27804955 G A C2orf16 Missense_Mutation p.R1839H 0.13 tolerated(0.1) unknown(0) TCGA-C5-A1MH-01 2 29245120 29245120 C G FAM179A Missense_Mutation p.S486W 0.14 deleterious(0) probably_damaging(0.993) TCGA-C5-A1MH-01 2 29295854 29295854 C T C2orf71 Missense_Mutation p.R425Q 0.07 deleterious(0.04) benign(0.001) TCGA-C5-A1MH-01 2 29419650 29419650 C T ALK Missense_Mutation p.E1384K 0.13 tolerated(0.38) benign(0.029) TCGA-C5-A1MH-01 2 36704113 36704113 G A CRIM1 Missense_Mutation p.R358Q 0.06 tolerated(0.61) benign(0.012) TCGA-C5-A1MH-01 2 55253920 55253920 C G RTN4 Missense_Mutation p.E439Q 0.05 deleterious(0) probably_damaging(0.911) TCGA-C5-A1MH-01 2 55481852 55481852 C T MTIF2 Missense_Mutation p.M147I 0.07 tolerated(0.06) benign(0.259) TCGA-C5-A1MH-01 2 70504273 70504273 C G PCYOX1 Missense_Mutation p.L423V 0.15 tolerated(0.31) benign(0.029) TCGA-C5-A1MH-01 2 79386522 79386522 G A REG3A Missense_Mutation p.P4S 0.10 tolerated(0.36) benign(0.01) TCGA-C5-A1MH-01 2 86270138 86270138 C G POLR1A Missense_Mutation p.E1106Q 0.05 tolerated(0.53) benign(0.009) TCGA-C5-A1MH-01 2 8919253 8919253 G A KIDINS220 Missense_Mutation p.S796L 0.06 deleterious(0) possibly_damaging(0.861) TCGA-C5-A1MH-01 2 96803339 96803339 G C ASTL Missense_Mutation p.D52E 0.15 tolerated(0.11) probably_damaging(0.971) TCGA-C5-A1MH-01 2 96948946 96948946 G A SNRNP200 Silent p.F1636F 0.08 TCGA-C5-A1MH-01 3 101283864 101283864 C T TRMT10C Missense_Mutation p.S80L 0.10 tolerated(0.11) benign(0.004) TCGA-C5-A1MH-01 3 107769437 107769437 C T CD47 Missense_Mutation p.E308K 0.09 deleterious(0.03) possibly_damaging(0.899) TCGA-C5-A1MH-01 3 111886195 111886195 C G SLC9C1 Splice_Site p.X1080_splice 0.15 TCGA-C5-A1MH-01 3 113286512 113286512 C G SIDT1 Missense_Mutation p.A157G 0.07 deleterious(0) benign(0.097) TCGA-C5-A1MH-01 3 113345002 113345002 C G SIDT1 Missense_Mutation p.F787L 0.04 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 3 119120821 119120821 G A ARHGAP31 Missense_Mutation p.E408K 0.10 tolerated(0.47) possibly_damaging(0.459) TCGA-C5-A1MH-01 3 121409792 121409792 G C GOLGB1 Missense_Mutation p.H2807D 0.05 benign(0.098) TCGA-C5-A1MH-01 3 121822379 121822379 C G CD86 Missense_Mutation p.Q29E 0.09 tolerated(0.3) benign(0.028) TCGA-C5-A1MH-01 3 122156070 122156070 C T KPNA1 Missense_Mutation p.E357K 0.05 deleterious(0) probably_damaging(0.974) TCGA-C5-A1MH-01 3 124374457 124374457 G C KALRN Silent p.L26L 0.06 TCGA-C5-A1MH-01 3 130284200 130284200 C T COL6A6 Nonsense_Mutation p.R342* 0.23 TCGA-C5-A1MH-01 3 136141645 136141645 C G STAG1 Missense_Mutation p.D600H 0.07 deleterious(0) benign(0.175) TCGA-C5-A1MH-01 3 139065764 139065764 G A MRPS22 Missense_Mutation p.E73K 0.11 tolerated(0.16) benign(0.05) TCGA-C5-A1MH-01 3 141162891 141162891 G A ZBTB38 Missense_Mutation p.G554E 0.22 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 3 148596449 148596449 G C CPA3 Missense_Mutation p.E130Q 0.07 tolerated(0.49) benign(0.014) TCGA-C5-A1MH-01 3 151166292 151166292 C T IGSF10 Missense_Mutation p.V493I 0.04 tolerated(0.93) benign(0.003) TCGA-C5-A1MH-01 3 151458487 151458487 G A AADACL2 Missense_Mutation p.M64I 0.14 tolerated(0.86) benign(0.001) TCGA-C5-A1MH-01 3 169511578 169511578 C T LRRC34 Missense_Mutation p.D414N 0.12 tolerated(0.06) possibly_damaging(0.668) TCGA-C5-A1MH-01 3 171969135 171969135 C A FNDC3B Silent p.R198R 0.29 TCGA-C5-A1MH-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-C5-A1MH-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.13 tolerated(0.36) benign(0.4) TCGA-C5-A1MH-01 3 183977945 183977945 C T CAMK2N2 Silent p.%3D 0.29 TCGA-C5-A1MH-01 3 183996310 183996310 C T ECE2 Missense_Mutation p.R379W 0.12 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 3 184049281 184049281 G A EIF4G1 Missense_Mutation p.E1435K 0.07 tolerated(0.1) possibly_damaging(0.776) TCGA-C5-A1MH-01 3 184090793 184090793 G A THPO Silent p.L190L 0.11 TCGA-C5-A1MH-01 3 184429339 184429339 C G MAGEF1 Missense_Mutation p.D91H 0.07 deleterious(0.04) probably_damaging(0.963) TCGA-C5-A1MH-01 3 186303135 186303135 A G DNAJB11 Missense_Mutation p.I339V 0.13 tolerated(0.14) benign(0) TCGA-C5-A1MH-01 3 189586422 189586422 G C TP63 Missense_Mutation p.G349A 0.09 deleterious(0.04) benign(0.296) TCGA-C5-A1MH-01 3 196236422 196236422 C T SMCO1 Missense_Mutation p.D57N 0.07 tolerated(0.11) possibly_damaging(0.747) TCGA-C5-A1MH-01 3 196863488 196863488 G C DLG1 Missense_Mutation p.I348M 0.04 deleterious(0.01) benign(0.313) TCGA-C5-A1MH-01 3 30891495 30891495 G C GADL1 Missense_Mutation p.S215C 0.06 deleterious(0) probably_damaging(0.909) TCGA-C5-A1MH-01 3 37089136 37089136 G A MLH1 Missense_Mutation p.E620K 0.07 deleterious(0.03) benign(0.02) TCGA-C5-A1MH-01 3 39125682 39125682 G A WDR48 Missense_Mutation p.E404K 0.17 deleterious(0.01) possibly_damaging(0.788) TCGA-C5-A1MH-01 3 41275108 41275108 C G CTNNB1 Missense_Mutation p.S425C 0.06 deleterious(0.01) possibly_damaging(0.696) TCGA-C5-A1MH-01 3 46716160 46716160 G A ALS2CL Silent p.L775L 0.19 TCGA-C5-A1MH-01 3 48675652 48675652 C G CELSR3 Missense_Mutation p.E3309Q 0.08 deleterious_low_confidence(0.03) benign(0.147) TCGA-C5-A1MH-01 3 49395263 49395263 G A GPX1 Intron 0.24 TCGA-C5-A1MH-01 3 50367880 50367880 C G RASSF1 3'UTR 0.20 TCGA-C5-A1MH-01 3 50369054 50369054 C G RASSF1 Missense_Mutation p.K236N 0.27 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 3 52248230 52248230 C T ALAS1 3'UTR 0.06 TCGA-C5-A1MH-01 3 52437766 52437766 G C BAP1 Missense_Mutation p.I465M 0.05 tolerated(0.05) possibly_damaging(0.453) TCGA-C5-A1MH-01 3 52582226 52582226 C T PBRM1 Silent p.S1534S 0.13 TCGA-C5-A1MH-01 3 57232436 57232436 C G HESX1 Missense_Mutation p.E148Q 0.08 deleterious(0.01) benign(0.439) TCGA-C5-A1MH-01 3 97744425 97744425 C G GABRR3 RNA 0.06 TCGA-C5-A1MH-01 3 99979910 99979910 C T TBC1D23 Silent p.D16D 0.05 TCGA-C5-A1MH-01 4 10445539 10445539 C G ZNF518B Missense_Mutation p.R805T 0.06 tolerated(1) benign(0) TCGA-C5-A1MH-01 4 114279312 114279312 G C ANK2 Missense_Mutation p.D3180H 0.07 probably_damaging(0.924) TCGA-C5-A1MH-01 4 114824078 114824078 G A ARSJ Silent p.L384L 0.08 TCGA-C5-A1MH-01 4 129100652 129100652 G C LARP1B Missense_Mutation p.G663A 0.13 deleterious(0.01) benign(0) TCGA-C5-A1MH-01 4 129792793 129792793 G C JADE1 Missense_Mutation p.K635N 0.09 deleterious(0.01) possibly_damaging(0.478) TCGA-C5-A1MH-01 4 140811803 140811803 C G MAML3 Missense_Mutation p.E263Q 0.04 possibly_damaging(0.744) TCGA-C5-A1MH-01 4 146083806 146083806 G A OTUD4 Missense_Mutation p.S96F 0.15 deleterious(0) probably_damaging(0.947) TCGA-C5-A1MH-01 4 154513680 154513680 C G KIAA0922 Silent p.L622L 0.12 TCGA-C5-A1MH-01 4 16504353 16504353 C T LDB2 Silent p.A345A 0.05 TCGA-C5-A1MH-01 4 170038681 170038681 C T SH3RF1 Silent p.V590V 0.09 TCGA-C5-A1MH-01 4 1807849 1807849 C T FGFR3 Silent p.F638F 0.10 TCGA-C5-A1MH-01 4 184612514 184612514 G A TRAPPC11 Missense_Mutation p.E647K 0.07 tolerated(0.73) benign(0.01) TCGA-C5-A1MH-01 4 48636431 48636431 G A FRYL 5'UTR 0.07 TCGA-C5-A1MH-01 4 55152005 55152005 C T PDGFRA Intron 0.14 TCGA-C5-A1MH-01 4 6873338 6873338 G C KIAA0232 Missense_Mutation p.R1280T 0.05 tolerated_low_confidence(0.28) benign(0.064) TCGA-C5-A1MH-01 4 69327602 69327602 C G TMPRSS11E Missense_Mutation p.I25M 0.05 deleterious(0.03) benign(0.264) TCGA-C5-A1MH-01 4 6995933 6995933 G A TBC1D14 Missense_Mutation p.R289K 0.17 tolerated(0.23) benign(0.003) TCGA-C5-A1MH-01 4 72306422 72306422 C T SLC4A4 Silent p.F299F 0.08 TCGA-C5-A1MH-01 4 77288597 77288597 C G CCDC158 Missense_Mutation p.K560N 0.07 deleterious(0) probably_damaging(0.99) TCGA-C5-A1MH-01 4 79420968 79420968 G C FRAS1 Missense_Mutation p.R3070T 0.22 benign(0.141) TCGA-C5-A1MH-01 4 87643575 87643575 A C PTPN13 Missense_Mutation p.Q532H 0.06 tolerated(0.1) probably_damaging(0.997) TCGA-C5-A1MH-01 4 88084642 88084642 G A KLHL8 3'UTR 0.06 TCGA-C5-A1MH-01 4 90169273 90169273 C G GPRIN3 Missense_Mutation p.K663N 0.06 deleterious(0) possibly_damaging(0.84) TCGA-C5-A1MH-01 5 111541149 111541149 G A EPB41L4A Missense_Mutation p.H411Y 0.08 deleterious(0.01) benign(0.081) TCGA-C5-A1MH-01 5 121187814 121187814 C T FTMT Silent p.A52A 0.42 TCGA-C5-A1MH-01 5 135583167 135583167 C T TRPC7 Silent p.A612A 0.11 TCGA-C5-A1MH-01 5 13885102 13885102 G A DNAH5 Silent p.F993F 0.07 TCGA-C5-A1MH-01 5 13891184 13891184 G A DNAH5 Silent p.F826F 0.05 TCGA-C5-A1MH-01 5 140250050 140250050 C T PCDHA11 Silent p.F454F 0.08 TCGA-C5-A1MH-01 5 140774125 140774125 C A PCDHGA8 Missense_Mutation p.A582E 0.17 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-C5-A1MH-01 5 140794696 140794696 G A PCDHGA10 Missense_Mutation p.D652N 0.09 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-C5-A1MH-01 5 140811189 140811189 C T PCDHGA12 Missense_Mutation p.A288V 0.14 tolerated_low_confidence(0.37) benign(0.048) TCGA-C5-A1MH-01 5 167674361 167674361 C T TENM2 Silent p.I2139I 0.09 TCGA-C5-A1MH-01 5 173317425 173317425 C G CPEB4 Nonsense_Mutation p.S230* 0.16 TCGA-C5-A1MH-01 5 175906255 175906255 G C FAF2 Missense_Mutation p.E44Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-C5-A1MH-01 5 179192494 179192494 C G MAML1 Silent p.L161L 0.10 TCGA-C5-A1MH-01 5 180662078 180662078 G C TRIM41 3'UTR 0.10 TCGA-C5-A1MH-01 5 224502 224502 C T SDHA Missense_Mutation p.H60Y 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-C5-A1MH-01 5 34845686 34845686 G C TTC23L Missense_Mutation p.E55Q 0.18 tolerated(0.13) benign(0.052) TCGA-C5-A1MH-01 5 35084645 35084645 G A PRLR Silent p.I100I 0.07 TCGA-C5-A1MH-01 5 56219369 56219369 C T MIER3 Silent p.V412V 0.10 TCGA-C5-A1MH-01 5 64867958 64867958 G C PPWD1 Missense_Mutation p.D272H 0.05 deleterious(0) probably_damaging(0.982) TCGA-C5-A1MH-01 5 65077185 65077185 G A NLN Silent p.K253K 0.10 TCGA-C5-A1MH-01 5 65105892 65105892 G C NLN Missense_Mutation p.L581F 0.06 tolerated(0.15) benign(0.444) TCGA-C5-A1MH-01 5 65370983 65370983 G A ERBB2IP Silent p.L1303L 0.06 TCGA-C5-A1MH-01 5 70800496 70800496 G T BDP1 Missense_Mutation p.D764Y 0.14 deleterious(0) possibly_damaging(0.805) TCGA-C5-A1MH-01 5 76173601 76173601 C G S100Z Missense_Mutation p.L82V 0.11 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 5 81608442 81608442 C G ATP6AP1L Silent p.T48T 0.08 TCGA-C5-A1MH-01 6 100390912 100390912 G A MCHR2 Missense_Mutation p.P167L 0.10 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 6 107595340 107595340 C T PDSS2 Missense_Mutation p.D175N 0.07 deleterious(0.03) possibly_damaging(0.817) TCGA-C5-A1MH-01 6 111214021 111214021 G C AMD1 Missense_Mutation p.M233I 0.10 tolerated(0.97) possibly_damaging(0.906) TCGA-C5-A1MH-01 6 111345525 111345525 C G RPF2 Missense_Mutation p.L246V 0.07 tolerated(0.18) benign(0.015) TCGA-C5-A1MH-01 6 117244318 117244318 C T RFX6 Silent p.L496L 0.08 TCGA-C5-A1MH-01 6 129762132 129762132 C G LAMA2 Missense_Mutation p.P2086R 0.10 deleterious(0) probably_damaging(0.984) TCGA-C5-A1MH-01 6 130392189 130392189 C A L3MBTL3 Missense_Mutation p.F387L 0.24 tolerated(1) benign(0.306) TCGA-C5-A1MH-01 6 130761645 130761645 C T TMEM200A Silent p.V26V 0.07 TCGA-C5-A1MH-01 6 133014412 133014412 C G VNN1 Missense_Mutation p.E193Q 0.06 tolerated(0.16) benign(0.175) TCGA-C5-A1MH-01 6 137519199 137519199 C G IFNGR1 Missense_Mutation p.R480T 0.15 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 6 137814879 137814879 C G OLIG3 Missense_Mutation p.E143D 0.26 tolerated(0.05) probably_damaging(0.956) TCGA-C5-A1MH-01 6 157522462 157522462 G A ARID1B Missense_Mutation p.M1578I 0.05 benign(0.074) TCGA-C5-A1MH-01 6 158342600 158342600 G A SNX9 Silent p.E329E 0.06 TCGA-C5-A1MH-01 6 159654069 159654069 G A FNDC1 Missense_Mutation p.R842Q 0.27 deleterious_low_confidence(0.02) unknown(0) TCGA-C5-A1MH-01 6 159677621 159677621 C T FNDC1 Missense_Mutation p.S1711L 0.05 deleterious(0) probably_damaging(0.952) TCGA-C5-A1MH-01 6 160200193 160200193 C G TCP1 Missense_Mutation p.E519Q 0.07 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 6 160328830 160328830 C G MAS1 Missense_Mutation p.F281L 0.06 tolerated(0.06) possibly_damaging(0.831) TCGA-C5-A1MH-01 6 160557675 160557675 T A SLC22A1 Missense_Mutation p.Y352N 0.09 deleterious(0) probably_damaging(0.991) TCGA-C5-A1MH-01 6 170626894 170626894 T C FAM120B Missense_Mutation p.V139A 0.06 tolerated(0.06) benign(0.132) TCGA-C5-A1MH-01 6 17640293 17640293 G A NUP153 Missense_Mutation p.H575Y 0.08 deleterious(0.05) benign(0.139) TCGA-C5-A1MH-01 6 28053439 28053439 C G ZNF165 Missense_Mutation p.P61A 0.05 tolerated(0.27) benign(0.019) TCGA-C5-A1MH-01 6 29079954 29079954 C T OR2J3 Missense_Mutation p.S96F 0.07 deleterious(0) probably_damaging(0.994) TCGA-C5-A1MH-01 6 2954917 2954917 G C SERPINB6 Missense_Mutation p.F113L 0.07 tolerated(0.18) benign(0.364) TCGA-C5-A1MH-01 6 30640498 30640498 C T DHX16 Missense_Mutation p.E41K 0.08 tolerated(0.76) possibly_damaging(0.835) TCGA-C5-A1MH-01 6 31600193 31600193 C T PRRC2A Missense_Mutation p.A1248V 0.13 unknown(0) TCGA-C5-A1MH-01 6 31848475 31848475 C G EHMT2 Missense_Mutation p.D1143H 0.14 tolerated(0.17) possibly_damaging(0.826) TCGA-C5-A1MH-01 6 32261577 32261577 C T C6orf10 Silent p.E291E 0.07 TCGA-C5-A1MH-01 6 32339569 32339569 C T C6orf10 5'UTR 0.12 TCGA-C5-A1MH-01 6 32942310 32942310 G C BRD2 Missense_Mutation p.R34P 0.08 deleterious(0) probably_damaging(0.992) TCGA-C5-A1MH-01 6 33246092 33246092 G A B3GALT4 Missense_Mutation p.R299Q 0.11 tolerated(0.07) benign(0.243) TCGA-C5-A1MH-01 6 33744831 33744831 C G LEMD2 Missense_Mutation p.V421L 0.06 deleterious(0.01) possibly_damaging(0.697) TCGA-C5-A1MH-01 6 34802148 34802148 C T UHRF1BP1 Missense_Mutation p.R165C 0.12 deleterious(0) probably_damaging(0.948) TCGA-C5-A1MH-01 6 41658581 41658581 C T TFEB Silent p.L96L 0.10 TCGA-C5-A1MH-01 6 44116376 44116376 G C TMEM63B Missense_Mutation p.Q416H 0.19 tolerated(0.08) possibly_damaging(0.583) TCGA-C5-A1MH-01 6 46656958 46656958 G C TDRD6 Missense_Mutation p.E365Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 6 56394342 56394342 C G DST Silent p.L3210L 0.08 TCGA-C5-A1MH-01 7 100187813 100187813 C T FBXO24 Missense_Mutation p.S90L 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-C5-A1MH-01 7 100304761 100304761 C G POP7 Missense_Mutation p.S103C 0.08 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MH-01 7 100470816 100470816 C T TRIP6 Missense_Mutation p.S441F 0.14 deleterious(0) probably_damaging(1) TCGA-C5-A1MH-01 7 100682189 100682189 A G MUC17 Missense_Mutation p.T2498A 0.15 probably_damaging(0.931) TCGA-C5-A1MH-01 7 100730884 100730884 G A TRIM56 Silent p.G97G 0.15 TCGA-C5-A1MH-01 7 119914774 119914774 C T KCND2 Missense_Mutation p.P30S 0.16 tolerated(0.1) benign(0.002) TCGA-C5-A1MH-01 7 120764400 120764400 G C CPED1 Missense_Mutation p.E312Q 0.14 tolerated(0.09) possibly_damaging(0.603) TCGA-C5-A1MH-01 7 128138114 128138114 G A METTL2B Silent p.L278L 0.09 TCGA-C5-A1MH-01 7 129053478 129053478 G A AHCYL2 Silent p.K470K 0.16 TCGA-C5-A1MH-01 7 131883280 131883280 C T PLXNA4 Missense_Mutation p.C901Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 7 142104242 142104242 C T TRBV6-9 Missense_Mutation p.D75N 0.13 tolerated(0.15) benign(0.002) TCGA-C5-A1MH-01 7 1479625 1479625 G A MICALL2 Silent p.I634I 0.32 TCGA-C5-A1MH-01 7 149152780 149152780 C T ZNF777 Missense_Mutation p.E112K 0.09 tolerated_low_confidence(0.19) benign(0.073) TCGA-C5-A1MH-01 7 150937513 150937513 G C SMARCD3 Missense_Mutation p.I345M 0.14 deleterious(0.02) probably_damaging(0.993) TCGA-C5-A1MH-01 7 157023842 157023842 G C UBE3C Missense_Mutation p.D768H 0.18 deleterious(0) probably_damaging(0.986) TCGA-C5-A1MH-01 7 17378992 17378992 G C AHR Missense_Mutation p.D515H 0.05 tolerated(0.06) benign(0.401) TCGA-C5-A1MH-01 7 19739762 19739762 C A TWISTNB Nonsense_Mutation p.E180* 0.19 TCGA-C5-A1MH-01 7 23353181 23353181 G C IGF2BP3 Missense_Mutation p.S496C 0.11 deleterious(0) probably_damaging(0.986) TCGA-C5-A1MH-01 7 2412417 2412417 G A EIF3B Silent p.K599K 0.10 TCGA-C5-A1MH-01 7 28997039 28997039 G A AC005013.5 5'Flank 0.12 TCGA-C5-A1MH-01 7 30639587 30639587 G A GARS Missense_Mutation p.D117N 0.05 tolerated(0.38) probably_damaging(0.975) TCGA-C5-A1MH-01 7 33014871 33014871 C T FKBP9 Nonsense_Mutation p.Q149* 0.14 TCGA-C5-A1MH-01 7 36396704 36396704 A G KIAA0895 Missense_Mutation p.F225S 0.06 tolerated(0.3) benign(0.196) TCGA-C5-A1MH-01 7 5567921 5567921 A C ACTB Missense_Mutation p.S265A 0.05 tolerated_low_confidence(0.12) benign(0.001) TCGA-C5-A1MH-01 7 73646450 73646450 G C RFC2 Missense_Mutation p.P351A 0.12 deleterious_low_confidence(0.03) benign(0.011) TCGA-C5-A1MH-01 7 81388044 81388044 C T HGF Missense_Mutation p.E111K 0.09 tolerated(0.86) benign(0.001) TCGA-C5-A1MH-01 7 87536722 87536722 G A DBF4 Silent p.L423L 0.15 TCGA-C5-A1MH-01 7 92098668 92098668 G A ERVW-1 Missense_Mutation p.S343F 0.13 deleterious(0) possibly_damaging(0.512) TCGA-C5-A1MH-01 8 100133458 100133458 C T VPS13B Nonsense_Mutation p.Q331* 0.14 TCGA-C5-A1MH-01 8 109226922 109226922 C T EIF3E Silent p.L325L 0.22 TCGA-C5-A1MH-01 8 141874446 141874446 C T PTK2 Missense_Mutation p.E139K 0.11 tolerated(0.46) benign(0.048) TCGA-C5-A1MH-01 8 142225950 142225950 C T SLC45A4 Missense_Mutation p.A566T 0.12 tolerated(0.54) possibly_damaging(0.46) TCGA-C5-A1MH-01 8 144810875 144810875 C G FAM83H Missense_Mutation p.E252D 0.08 deleterious(0.01) probably_damaging(0.985) TCGA-C5-A1MH-01 8 144998412 144998412 C G PLEC Silent p.L2032L 0.21 TCGA-C5-A1MH-01 8 145657729 145657729 G A TONSL Missense_Mutation p.S1225F 0.12 deleterious(0) possibly_damaging(0.8) TCGA-C5-A1MH-01 8 20055039 20055039 C G ATP6V1B2 Missense_Mutation p.S41C 0.20 tolerated_low_confidence(0.16) possibly_damaging(0.592) TCGA-C5-A1MH-01 8 2026823 2026823 T C MYOM2 Missense_Mutation p.V424A 0.06 tolerated(0.19) benign(0.077) TCGA-C5-A1MH-01 8 41166557 41166557 G A SFRP1 Missense_Mutation p.S41L 0.14 tolerated(0.14) benign(0.001) TCGA-C5-A1MH-01 8 41554223 41554223 G C ANK1 Missense_Mutation p.I943M 0.09 tolerated(0.09) benign(0.13) TCGA-C5-A1MH-01 8 51569549 51569549 G A SNTG1 Silent p.L310L 0.10 TCGA-C5-A1MH-01 8 65508746 65508746 C G CYP7B1 3'UTR 0.07 TCGA-C5-A1MH-01 8 71495505 71495505 G C TRAM1 Missense_Mutation p.F315L 0.11 tolerated(0.25) benign(0.06) TCGA-C5-A1MH-01 8 75157351 75157351 C T JPH1 Missense_Mutation p.E440K 0.11 tolerated(0.19) benign(0.099) TCGA-C5-A1MH-01 8 87552528 87552528 C G CPNE3 Nonsense_Mutation p.S200* 0.04 TCGA-C5-A1MH-01 8 98288756 98288756 G A TSPYL5 3'UTR 0.07 TCGA-C5-A1MH-01 8 98711993 98711993 G A MTDH Missense_Mutation p.E354K 0.18 deleterious(0.01) possibly_damaging(0.542) TCGA-C5-A1MH-01 9 104171183 104171183 G A ZNF189 Missense_Mutation p.G378E 0.09 tolerated(0.09) probably_damaging(0.984) TCGA-C5-A1MH-01 9 104499904 104499904 C T GRIN3A Missense_Mutation p.E120K 0.39 tolerated_low_confidence(0.24) benign(0.034) TCGA-C5-A1MH-01 9 116132318 116132318 G A BSPRY Missense_Mutation p.E369K 0.11 deleterious(0.01) possibly_damaging(0.61) TCGA-C5-A1MH-01 9 129102821 129102821 C G MVB12B Nonsense_Mutation p.S39* 0.14 TCGA-C5-A1MH-01 9 135042303 135042303 G C NTNG2 Missense_Mutation p.D29H 0.15 deleterious(0) probably_damaging(0.944) TCGA-C5-A1MH-01 9 140036545 140036545 C G GRIN1 Missense_Mutation p.F113L 0.06 deleterious(0.02) benign(0.12) TCGA-C5-A1MH-01 9 140997167 140997167 C T CACNA1B Missense_Mutation p.R1743C 0.19 deleterious(0) probably_damaging(0.973) TCGA-C5-A1MH-01 9 141010114 141010114 C T CACNA1B Silent p.L1920L 0.14 TCGA-C5-A1MH-01 9 34500823 34500823 C G DNAI1 Silent p.V335V 0.22 TCGA-C5-A1MH-01 9 34658549 34658549 G C IL11RA Missense_Mutation p.E227Q 0.12 tolerated(0.08) possibly_damaging(0.79) TCGA-C5-A1MH-01 9 35377653 35377653 G C UNC13B Missense_Mutation p.D593H 0.19 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MH-01 9 6013795 6013795 C T RANBP6 Missense_Mutation p.D605N 0.05 deleterious(0) probably_damaging(0.931) TCGA-C5-A1MH-01 9 79936432 79936432 C T VPS13A Missense_Mutation p.S1867F 0.21 deleterious(0.01) benign(0.006) TCGA-C5-A1MH-01 9 86554522 86554522 G A C9orf64 Silent p.S310S 0.08 TCGA-C5-A1MH-01 9 95272246 95272246 G C ECM2 Missense_Mutation p.S414C 0.07 deleterious(0.01) possibly_damaging(0.832) TCGA-C5-A1MH-01 9 99327720 99327720 G A CDC14B Missense_Mutation p.S69L 0.06 tolerated(0.09) benign(0.058) TCGA-C5-A1MH-01 X 102337129 102337129 G T NXF3 Intron 0.12 TCGA-C5-A1MH-01 X 102586554 102586554 G C TCEAL7 Missense_Mutation p.E75Q 0.06 deleterious(0) possibly_damaging(0.672) TCGA-C5-A1MH-01 X 103499539 103499539 C T ESX1 5'UTR 0.07 TCGA-C5-A1MH-01 X 107328181 107328182 - AGTTGT PSMD10 3'UTR 0.11 TCGA-C5-A1MH-01 X 107328211 107328211 T A PSMD10 Missense_Mutation p.E225V 0.08 deleterious(0) benign(0.421) TCGA-C5-A1MH-01 X 107408146 107408146 G A COL4A6 Missense_Mutation p.P1312S 0.16 possibly_damaging(0.498) TCGA-C5-A1MH-01 X 123224510 123224510 C T STAG2 Silent p.L1121L 0.09 TCGA-C5-A1MH-01 X 125299852 125299852 C T DCAF12L2 Missense_Mutation p.G19E 0.09 deleterious_low_confidence(0.02) benign(0.144) TCGA-C5-A1MH-01 X 129518528 129518528 C T GPR119 Silent p.K298K 0.06 TCGA-C5-A1MH-01 X 129765491 129765491 C T ENOX2 Silent p.K522K 0.07 TCGA-C5-A1MH-01 X 149905175 149905175 G C MTMR1 Missense_Mutation p.E389Q 0.06 deleterious(0.01) benign(0.062) TCGA-C5-A1MH-01 X 151303779 151303779 G T MAGEA10 Missense_Mutation p.S105Y 0.06 deleterious(0) benign(0.285) TCGA-C5-A1MH-01 X 151935841 151935841 A T MAGEA3 Missense_Mutation p.L109H 0.11 deleterious(0) probably_damaging(0.948) TCGA-C5-A1MH-01 X 152966397 152966397 C T BCAP31 Missense_Mutation p.E313K 0.09 deleterious(0.04) benign(0.073) TCGA-C5-A1MH-01 X 153033712 153033712 C T PLXNB3 Silent p.P388P 0.07 TCGA-C5-A1MH-01 X 153763457 153763457 G T G6PD Silent p.L167L 0.15 TCGA-C5-A1MH-01 X 32380904 32380904 C A DMD Splice_Site p.X1775_splice 0.09 TCGA-C5-A1MH-01 X 41205768 41205768 G C DDX3X Missense_Mutation p.R503T 0.09 deleterious(0) probably_damaging(0.993) TCGA-C5-A1MH-01 X 46913877 46913877 C G JADE3 Missense_Mutation p.I430M 0.07 deleterious(0) probably_damaging(0.973) TCGA-C5-A1MH-01 X 47269681 47269681 G A ZNF157 Missense_Mutation p.V27M 0.14 deleterious(0.03) possibly_damaging(0.595) TCGA-C5-A1MH-01 X 53589843 53589843 C T HUWE1 Missense_Mutation p.E2385K 0.11 probably_damaging(0.952) TCGA-C5-A1MH-01 X 55782357 55782357 G A RRAGB Silent p.L301L 0.10 TCGA-C5-A1MH-01 X 62863882 62863882 C T ARHGEF9 Silent p.V449V 0.13 TCGA-C5-A1MH-01 X 79999553 79999553 G A BRWD3 Missense_Mutation p.S264L 0.09 tolerated(0.11) benign(0.104) TCGA-C5-A1MH-01 X 90691233 90691233 C T PABPC5 Silent p.F219F 0.07 TCGA-C5-A1MI-01 10 104492659 104492659 C T SFXN2 Silent p.F255F 0.30 TCGA-C5-A1MI-01 10 135094863 135094863 G C TUBGCP2 Missense_Mutation p.F857L 0.06 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MI-01 10 46122404 46122404 G C ZFAND4 Silent p.P289P 0.30 TCGA-C5-A1MI-01 11 133791120 133791120 C T IGSF9B Missense_Mutation p.V834M 0.32 deleterious(0) possibly_damaging(0.454) TCGA-C5-A1MI-01 11 63990963 63990963 G C FERMT3 Nonstop_Mutation p.*668Sext*44 0.40 TCGA-C5-A1MI-01 12 104397008 104397008 A - GLT8D2 Frame_Shift_Del p.A64Pfs*21 0.18 TCGA-C5-A1MI-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.20 deleterious(0.05) possibly_damaging(0.789) TCGA-C5-A1MI-01 12 69666847 69666847 G C CPSF6 3'UTR 0.18 TCGA-C5-A1MI-01 13 70371050 70371050 T A KLHL1 Missense_Mutation p.I487F 0.52 tolerated(0.7) benign(0.189) TCGA-C5-A1MI-01 15 73616100 73616100 G A HCN4 Silent p.I778I 0.54 TCGA-C5-A1MI-01 15 84373210 84373210 C G ADAMTSL3 Missense_Mutation p.L47V 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-C5-A1MI-01 15 90171693 90171693 C G KIF7 Missense_Mutation p.R1330P 0.35 deleterious(0.03) probably_damaging(0.98) TCGA-C5-A1MI-01 16 2115600 2115600 G T TSC2 Silent p.V560V 0.31 TCGA-C5-A1MI-01 16 46958347 46958347 C G GPT2 Missense_Mutation p.T420R 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-C5-A1MI-01 16 49313390 49313390 G A CBLN1 Silent p.L169L 0.48 TCGA-C5-A1MI-01 16 67271211 67271211 C T FHOD1 Silent p.A308A 0.50 TCGA-C5-A1MI-01 16 84497327 84497327 G A ATP2C2 Missense_Mutation p.E944K 0.27 tolerated_low_confidence(0.16) benign(0.002) TCGA-C5-A1MI-01 16 88891256 88891256 G A GALNS Silent p.G387G 0.21 TCGA-C5-A1MI-01 17 17696863 17696863 C G RAI1 Missense_Mutation p.L201V 0.22 deleterious(0.01) benign(0.214) TCGA-C5-A1MI-01 17 4077219 4077219 C T ANKFY1 Missense_Mutation p.E1012K 0.16 tolerated(0.82) possibly_damaging(0.709) TCGA-C5-A1MI-01 17 67261034 67261034 T C ABCA5 Missense_Mutation p.T1053A 0.60 tolerated(0.66) possibly_damaging(0.714) TCGA-C5-A1MI-01 17 79411745 79411745 C A RP11-1055B8.7 Missense_Mutation p.S855Y 0.52 probably_damaging(0.996) TCGA-C5-A1MI-01 19 11134251 11134251 C T SMARCA4 Missense_Mutation p.R973W 0.27 probably_damaging(0.998) TCGA-C5-A1MI-01 19 14516688 14516688 C G CD97 Silent p.L586L 0.51 TCGA-C5-A1MI-01 19 20236288 20236288 C T CTC-260E6.2 RNA 0.93 TCGA-C5-A1MI-01 19 34791377 34791377 G A KIAA0355 5'UTR 0.16 TCGA-C5-A1MI-01 19 39330948 39330948 C T HNRNPL Missense_Mutation p.E341K 0.19 tolerated(0.56) benign(0.197) TCGA-C5-A1MI-01 19 39669239 39669239 C G PAK4 3'UTR 0.25 TCGA-C5-A1MI-01 19 49652821 49652821 C T PPFIA3 Silent p.F1124F 0.39 TCGA-C5-A1MI-01 19 50250006 50250006 C T TSKS Missense_Mutation p.R238Q 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-C5-A1MI-01 19 50462671 50462671 G C SIGLEC11 Missense_Mutation p.R335G 0.10 deleterious(0.01) probably_damaging(0.99) TCGA-C5-A1MI-01 19 964968 964968 G A ARID3A Silent p.S362S 0.34 TCGA-C5-A1MI-01 1 116534855 116534855 C T SLC22A15 Silent p.I97I 0.38 TCGA-C5-A1MI-01 1 152284693 152284693 C T FLG Missense_Mutation p.R890K 0.57 probably_damaging(0.968) TCGA-C5-A1MI-01 1 19483350 19483350 G A UBR4 Missense_Mutation p.R1944C 0.21 probably_damaging(0.995) TCGA-C5-A1MI-01 1 223116265 223116265 G A DISP1 Missense_Mutation p.D34N 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.603) TCGA-C5-A1MI-01 1 248224828 248224828 C T OR2L3 Missense_Mutation p.P282L 0.18 deleterious(0) probably_damaging(0.997) TCGA-C5-A1MI-01 1 2538416 2538416 C T MMEL1 Missense_Mutation p.V210I 0.33 tolerated(0.34) benign(0.005) TCGA-C5-A1MI-01 1 27100375 27100375 C T ARID1A Nonsense_Mutation p.Q1363* 0.32 TCGA-C5-A1MI-01 1 27102065 27102065 C T ARID1A Intron 0.29 TCGA-C5-A1MI-01 20 18455810 18455810 C G POLR3F Missense_Mutation p.I136M 0.27 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MI-01 20 18576746 18576746 C A DTD1 Silent p.V77V 0.52 TCGA-C5-A1MI-01 20 3025090 3025090 C G GNRH2 Silent p.L10L 0.15 TCGA-C5-A1MI-01 20 3091040 3091040 C T UBOX5 Intron 0.17 TCGA-C5-A1MI-01 22 41566556 41566556 G A EP300 Missense_Mutation p.R1478H 0.07 possibly_damaging(0.777) TCGA-C5-A1MI-01 22 50191531 50191531 C T BRD1 Missense_Mutation p.G674S 0.71 deleterious(0.02) probably_damaging(1) TCGA-C5-A1MI-01 2 158142597 158142597 G C GALNT5 Missense_Mutation p.E564D 0.41 deleterious(0.04) probably_damaging(0.992) TCGA-C5-A1MI-01 2 220075187 220075187 G A ABCB6 Missense_Mutation p.A756V 0.12 deleterious(0) possibly_damaging(0.784) TCGA-C5-A1MI-01 2 239237349 239237349 G A TRAF3IP1 Missense_Mutation p.R126Q 0.16 deleterious(0.04) benign(0.408) TCGA-C5-A1MI-01 2 24406440 24406440 C A FAM228A Missense_Mutation p.F109L 0.43 tolerated(0.51) benign(0.075) TCGA-C5-A1MI-01 2 71209788 71209788 G A ANKRD53 Silent p.Q288Q 0.21 TCGA-C5-A1MI-01 2 73447240 73447240 G A SMYD5 Silent p.G89G 0.24 TCGA-C5-A1MI-01 3 118647512 118647512 C T IGSF11 Missense_Mutation p.G90S 0.25 tolerated(0.06) probably_damaging(0.992) TCGA-C5-A1MI-01 3 124215190 124215190 A G KALRN Missense_Mutation p.D1620G 0.18 deleterious(0) benign(0.087) TCGA-C5-A1MI-01 3 12660149 12660149 G C RAF1 Silent p.G24G 0.25 TCGA-C5-A1MI-01 3 52568558 52568558 C G NT5DC2 5'Flank 0.35 TCGA-C5-A1MI-01 3 99536827 99536827 G T CMSS1 Missense_Mutation p.A2S 0.10 deleterious(0.02) possibly_damaging(0.866) TCGA-C5-A1MI-01 4 160266410 160266410 A G RAPGEF2 Missense_Mutation p.N983S 0.69 tolerated(0.19) benign(0.002) TCGA-C5-A1MI-01 4 166976380 166976380 C T TLL1 Silent p.D559D 0.21 TCGA-C5-A1MI-01 5 138253527 138253527 C T CTNNA1 Missense_Mutation p.R496C 0.31 deleterious(0.04) possibly_damaging(0.838) TCGA-C5-A1MI-01 5 71493006 71493006 G A MAP1B Missense_Mutation p.R1275H 0.34 probably_damaging(0.991) TCGA-C5-A1MI-01 5 95067758 95067758 C G RHOBTB3 Silent p.V66V 0.23 TCGA-C5-A1MI-01 6 154567853 154567853 G A IPCEF1 Silent p.L40L 0.59 TCGA-C5-A1MI-01 6 57467154 57467154 C T PRIM2 3'UTR 0.06 TCGA-C5-A1MI-01 6 90312810 90312810 C T ANKRD6 Silent p.L94L 0.27 TCGA-C5-A1MI-01 7 72413868 72413868 G A POM121 Silent p.G847G 0.17 TCGA-C5-A1MI-01 7 82764213 82764213 C T PCLO Missense_Mutation p.A885T 0.30 unknown(0) TCGA-C5-A1MI-01 7 98508771 98508771 G A TRRAP Silent p.E628E 0.30 TCGA-C5-A1MI-01 8 30209644 30209644 G A TUBBP1 RNA 0.52 TCGA-C5-A1MI-01 9 107531250 107531250 G A NIPSNAP3B Silent p.T126T 0.24 TCGA-C5-A1MI-01 9 127076209 127076209 A T NEK6 Missense_Mutation p.E114V 0.16 deleterious(0.01) possibly_damaging(0.791) TCGA-C5-A1MI-01 9 131864843 131864843 C T CRAT Missense_Mutation p.E156K 0.04 tolerated(0.12) benign(0.078) TCGA-C5-A1MI-01 X 134421467 134421467 C T ZNF75D Missense_Mutation p.D379N 0.19 tolerated(0.15) probably_damaging(0.995) TCGA-C5-A1MI-01 X 144906594 144906594 G A SLITRK2 3'UTR 0.67 TCGA-C5-A1MI-01 X 153713871 153713871 G A UBL4A 3'UTR 0.26 TCGA-C5-A1MJ-01 10 119029903 119029903 G A SLC18A2 Missense_Mutation p.G457R 0.22 deleterious(0) probably_damaging(0.973) TCGA-C5-A1MJ-01 10 11994158 11994158 C G UPF2 Missense_Mutation p.E981Q 0.30 tolerated(0.33) benign(0.188) TCGA-C5-A1MJ-01 10 124380784 124380784 C A DMBT1 Silent p.V1703V 0.05 TCGA-C5-A1MJ-01 10 128795093 128795093 C T DOCK1 Silent p.F185F 0.23 TCGA-C5-A1MJ-01 10 135094896 135094896 G A TUBGCP2 Silent p.F846F 0.18 TCGA-C5-A1MJ-01 10 32307041 32307041 T - KIF5B Frame_Shift_Del p.Q828Rfs*47 0.15 TCGA-C5-A1MJ-01 11 108277614 108277614 C T C11orf65 Missense_Mutation p.R102K 0.15 tolerated(0.79) benign(0.078) TCGA-C5-A1MJ-01 11 119185550 119185550 G A MCAM Silent p.R131R 0.32 TCGA-C5-A1MJ-01 11 19255959 19255959 C G E2F8 Missense_Mutation p.K292N 0.20 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MJ-01 11 35336587 35336587 A T SLC1A2 Missense_Mutation p.I98N 0.32 deleterious(0) probably_damaging(0.981) TCGA-C5-A1MJ-01 11 46403873 46403873 G C MDK Missense_Mutation p.E36Q 0.39 deleterious(0.05) benign(0.081) TCGA-C5-A1MJ-01 11 68663993 68663993 C T MRPL21 Missense_Mutation p.R129Q 0.25 tolerated(0.11) possibly_damaging(0.846) TCGA-C5-A1MJ-01 11 94337148 94337148 A G PIWIL4 Splice_Site p.X522_splice 0.19 TCGA-C5-A1MJ-01 11 94731208 94731208 A G KDM4D Silent p.E224E 0.22 TCGA-C5-A1MJ-01 12 123057788 123057788 G C KNTC1 Missense_Mutation p.E747Q 0.27 tolerated(0.08) probably_damaging(0.979) TCGA-C5-A1MJ-01 12 53454245 53454245 C T TENC1 Missense_Mutation p.R902W 0.17 deleterious(0.01) possibly_damaging(0.828) TCGA-C5-A1MJ-01 12 56436361 56436361 C T RPS26 Silent p.D52D 0.07 TCGA-C5-A1MJ-01 12 56488256 56488256 G A ERBB3 Missense_Mutation p.G592E 0.30 deleterious(0.01) probably_damaging(0.973) TCGA-C5-A1MJ-01 12 66856701 66856701 C T GRIP1 Intron 0.39 TCGA-C5-A1MJ-01 12 7170342 7170342 C T C1S Missense_Mutation p.T121M 0.33 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MJ-01 12 9262517 9262517 C G A2M Missense_Mutation p.V207L 0.33 tolerated(0.22) benign(0.271) TCGA-C5-A1MJ-01 14 28733828 28733828 T C BNIP3P1 RNA 0.33 TCGA-C5-A1MJ-01 14 51446219 51446219 G T TRIM9 Missense_Mutation p.D652E 0.15 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MJ-01 15 28525273 28525273 C T HERC2 Silent p.E161E 0.35 TCGA-C5-A1MJ-01 15 45365748 45365748 C T SORD 3'UTR 0.26 TCGA-C5-A1MJ-01 16 12162973 12162973 C T SNX29 Missense_Mutation p.P435S 0.06 tolerated(0.43) benign(0.003) TCGA-C5-A1MJ-01 16 2813800 2813801 - A SRRM2 Frame_Shift_Ins p.T1092Nfs*4 0.27 TCGA-C5-A1MJ-01 16 55883536 55883536 C T CES5A Missense_Mutation p.E504K 0.10 tolerated(0.1) possibly_damaging(0.899) TCGA-C5-A1MJ-01 16 57416399 57416399 G A CX3CL1 Missense_Mutation p.E217K 0.15 tolerated(0.13) benign(0.086) TCGA-C5-A1MJ-01 17 18110256 18110256 C T ALKBH5 Missense_Mutation p.R327C 0.41 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-C5-A1MJ-01 17 19746514 19746514 G A ULK2 Nonsense_Mutation p.Q189* 0.41 TCGA-C5-A1MJ-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.38 deleterious(0) probably_damaging(0.994) TCGA-C5-A1MJ-01 17 73043594 73043594 C G KCTD2 Missense_Mutation p.F83L 0.16 tolerated(0.06) possibly_damaging(0.574) TCGA-C5-A1MJ-01 17 74289415 74289415 G C QRICH2 Missense_Mutation p.L299V 0.40 tolerated(0.6) benign(0.004) TCGA-C5-A1MJ-01 17 79409609 79409609 G A RP11-1055B8.7 Missense_Mutation p.E412K 0.39 probably_damaging(0.992) TCGA-C5-A1MJ-01 18 28991196 28991196 A T DSG4 Missense_Mutation p.I733F 0.43 deleterious(0) probably_damaging(0.996) TCGA-C5-A1MJ-01 18 2937748 2937748 C T LPIN2 Silent p.A370A 0.11 TCGA-C5-A1MJ-01 18 46570541 46570541 C G DYM Missense_Mutation p.E632Q 0.19 deleterious(0) probably_damaging(0.957) TCGA-C5-A1MJ-01 19 19360596 19360596 G A NCAN Missense_Mutation p.R1281Q 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-C5-A1MJ-01 19 39898462 39898462 C T ZFP36 Missense_Mutation p.S41L 0.20 tolerated(0.16) benign(0.123) TCGA-C5-A1MJ-01 19 40513243 40513243 C T ZNF546 Silent p.D78D 0.26 TCGA-C5-A1MJ-01 19 42793213 42793213 G C CIC Missense_Mutation p.D369H 0.17 probably_damaging(0.974) TCGA-C5-A1MJ-01 19 43586753 43586753 G T PSG2 5'UTR 0.27 TCGA-C5-A1MJ-01 19 54418743 54418743 C G CACNG7 Missense_Mutation p.I136M 0.30 deleterious(0) probably_damaging(0.914) TCGA-C5-A1MJ-01 19 58491316 58491316 A G ZNF606 Silent p.A244A 0.26 TCGA-C5-A1MJ-01 19 9204406 9204406 G A OR1M1 Silent p.L162L 0.16 TCGA-C5-A1MJ-01 1 114256082 114256082 G C PHTF1 Intron 0.40 TCGA-C5-A1MJ-01 1 145474435 145474435 G A ANKRD34A Silent p.L369L 0.39 TCGA-C5-A1MJ-01 1 158368642 158368642 G T OR10T2 Silent p.I205I 0.28 TCGA-C5-A1MJ-01 1 192779519 192779519 C T RGS2 Nonsense_Mutation p.Q78* 0.20 TCGA-C5-A1MJ-01 1 197069809 197069809 G A ASPM Nonsense_Mutation p.Q2858* 0.30 TCGA-C5-A1MJ-01 1 229568794 229568794 G A ACTA1 Silent p.F23F 0.10 TCGA-C5-A1MJ-01 1 24078184 24078184 G C TCEB3 Missense_Mutation p.E389D 0.58 tolerated(0.08) benign(0.005) TCGA-C5-A1MJ-01 1 37948736 37948736 T C ZC3H12A Missense_Mutation p.S442P 0.51 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MJ-01 1 42657386 42657386 C T FOXJ3 Silent p.L313L 0.08 TCGA-C5-A1MJ-01 20 16729605 16729605 C G OTOR Nonsense_Mutation p.S70* 0.14 TCGA-C5-A1MJ-01 20 33296600 33296600 C T TP53INP2 Silent p.P19P 0.24 TCGA-C5-A1MJ-01 20 33594341 33594341 G A TRPC4AP Missense_Mutation p.S575L 0.35 tolerated(0.1) probably_damaging(0.993) TCGA-C5-A1MJ-01 20 44690916 44690916 G A NCOA5 3'UTR 0.27 TCGA-C5-A1MJ-01 21 45546808 45546808 C T PWP2 Missense_Mutation p.P701L 0.05 tolerated(0.05) benign(0.111) TCGA-C5-A1MJ-01 22 36682865 36682865 G T MYH9 Missense_Mutation p.L1654M 0.25 possibly_damaging(0.45) TCGA-C5-A1MJ-01 22 50217002 50217002 G A BRD1 Missense_Mutation p.R322W 0.30 deleterious(0) probably_damaging(1) TCGA-C5-A1MJ-01 22 50599416 50599416 G A MOV10L1 Silent p.L1162L 0.23 TCGA-C5-A1MJ-01 22 50714061 50714061 C T PLXNB2 3'UTR 0.29 TCGA-C5-A1MJ-01 2 101654036 101654036 G A TBC1D8 Silent p.T455T 0.10 TCGA-C5-A1MJ-01 2 131487317 131487317 G A GPR148 Missense_Mutation p.G198E 0.12 tolerated(0.21) benign(0.062) TCGA-C5-A1MJ-01 2 158167845 158167845 A G GALNT5 Silent p.K936K 0.47 TCGA-C5-A1MJ-01 2 166773832 166773832 C A TTC21B Missense_Mutation p.D612Y 0.11 deleterious(0.02) possibly_damaging(0.594) TCGA-C5-A1MJ-01 2 178705049 178705049 C T PDE11A Missense_Mutation p.E477K 0.36 tolerated(0.31) probably_damaging(0.987) TCGA-C5-A1MJ-01 2 179495034 179495034 C G TTN Missense_Mutation p.D14739H 0.11 TCGA-C5-A1MJ-01 2 18113430 18113430 C T KCNS3 Silent p.L385L 0.52 TCGA-C5-A1MJ-01 2 21231002 21231002 A C APOB Missense_Mutation p.L2913R 0.14 benign(0.041) TCGA-C5-A1MJ-01 2 40342512 40342512 C T SLC8A1 Missense_Mutation p.G935S 0.06 deleterious(0.02) probably_damaging(0.936) TCGA-C5-A1MJ-01 3 108276131 108276131 C A KIAA1524 Missense_Mutation p.R715M 0.12 deleterious(0.03) possibly_damaging(0.819) TCGA-C5-A1MJ-01 3 109027096 109027096 C T DPPA2 Silent p.S147S 0.09 TCGA-C5-A1MJ-01 3 119109638 119109638 G A ARHGAP31 Missense_Mutation p.R230Q 0.20 tolerated(0.64) benign(0.004) TCGA-C5-A1MJ-01 3 129150282 129150282 T G MBD4 3'UTR 0.53 TCGA-C5-A1MJ-01 3 137843671 137843671 G A A4GNT Missense_Mutation p.S153F 0.30 deleterious(0.02) probably_damaging(0.948) TCGA-C5-A1MJ-01 3 148928011 148928011 C T CP Missense_Mutation p.D184N 0.26 tolerated(0.09) possibly_damaging(0.485) TCGA-C5-A1MJ-01 3 172766842 172766842 G T SPATA16 Missense_Mutation p.P219T 0.20 deleterious(0.03) benign(0.005) TCGA-C5-A1MJ-01 3 38889083 38889083 G A SCN11A Missense_Mutation p.S1493L 0.43 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MJ-01 4 146435948 146435948 G A SMAD1 Silent p.P61P 0.16 TCGA-C5-A1MJ-01 4 151729520 151729520 G A LRBA Missense_Mutation p.S1779L 0.19 deleterious(0.03) benign(0.012) TCGA-C5-A1MJ-01 4 46060338 46060338 C A GABRG1 Missense_Mutation p.G271V 0.38 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MJ-01 4 46060339 46060339 C G GABRG1 Missense_Mutation p.G271R 0.37 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MJ-01 5 140249937 140249937 G A PCDHA11 Missense_Mutation p.V417M 0.15 tolerated_low_confidence(0.1) possibly_damaging(0.563) TCGA-C5-A1MJ-01 5 140481796 140481796 C T PCDHB3 Silent p.Y521Y 0.13 TCGA-C5-A1MJ-01 5 140768904 140768904 G A PCDHGB4 Missense_Mutation p.V485I 0.20 tolerated(0.46) benign(0.162) TCGA-C5-A1MJ-01 5 143586961 143586961 C G KCTD16 Silent p.L228L 0.07 TCGA-C5-A1MJ-01 5 147665577 147665577 G A SPINK13 Missense_Mutation p.R84H 0.07 tolerated(1) benign(0.001) TCGA-C5-A1MJ-01 5 178392175 178392175 C T ZNF454 Missense_Mutation p.S257F 0.19 deleterious(0) probably_damaging(0.987) TCGA-C5-A1MJ-01 5 179021873 179021873 G C RUFY1 Missense_Mutation p.E474Q 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-C5-A1MJ-01 5 66398418 66398418 C G MAST4 Silent p.V375V 0.19 TCGA-C5-A1MJ-01 6 116757460 116757460 G A DSE Missense_Mutation p.R610K 0.21 tolerated(0.99) benign(0.036) TCGA-C5-A1MJ-01 6 20402643 20402643 C G E2F3 Missense_Mutation p.I60M 0.11 tolerated(0.14) benign(0.308) TCGA-C5-A1MJ-01 6 31864205 31864205 T C EHMT2 Silent p.K139K 0.08 TCGA-C5-A1MJ-01 6 34840174 34840174 C T UHRF1BP1 Missense_Mutation p.L1428F 0.13 deleterious(0.02) benign(0.162) TCGA-C5-A1MJ-01 6 42985400 42985400 G C KLHDC3 Missense_Mutation p.G100R 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-C5-A1MJ-01 6 72889509 72889509 C T RIMS1 Missense_Mutation p.P235S 0.17 tolerated(0.16) benign(0.001) TCGA-C5-A1MJ-01 7 107577713 107577713 A G LAMB1 Silent p.I1257I 0.37 TCGA-C5-A1MJ-01 7 122755586 122755586 C A SLC13A1 Nonsense_Mutation p.E592* 0.12 TCGA-C5-A1MJ-01 7 151846145 151846145 C T KMT2C Silent p.V4289V 0.11 TCGA-C5-A1MJ-01 7 1535086 1535086 A G INTS1 Silent p.P605P 0.10 TCGA-C5-A1MJ-01 7 19184649 19184649 G A FERD3L Missense_Mutation p.R113W 0.21 deleterious(0) probably_damaging(1) TCGA-C5-A1MJ-01 7 40132633 40132633 C T CDK13 Missense_Mutation p.S1162F 0.16 tolerated_low_confidence(0.06) possibly_damaging(0.592) TCGA-C5-A1MJ-01 7 47886542 47886542 C A PKD1L1 Missense_Mutation p.K1696N 0.16 tolerated(0.25) benign(0.368) TCGA-C5-A1MJ-01 7 99799930 99799930 C A STAG3 Missense_Mutation p.H844N 0.13 tolerated(0.05) benign(0.298) TCGA-C5-A1MJ-01 8 128972893 128972893 G C MIR1205 RNA 0.23 TCGA-C5-A1MJ-01 8 144993180 144993180 C T PLEC Silent p.Q3740Q 0.33 TCGA-C5-A1MJ-01 8 144995363 144995363 C T PLEC Missense_Mutation p.E3013K 0.06 benign(0.054) TCGA-C5-A1MJ-01 8 26238480 26238480 C T BNIP3L 5'Flank 0.37 TCGA-C5-A1MJ-01 8 30657146 30657146 C T PPP2CB Silent p.P76P 0.32 TCGA-C5-A1MJ-01 9 135073615 135073615 G A NTNG2 Missense_Mutation p.R159H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1MJ-01 9 138847247 138847247 G A UBAC1 Silent p.S51S 0.43 TCGA-C5-A1MJ-01 9 139890114 139890114 C T CLIC3 Silent p.T43T 0.14 TCGA-C5-A1MJ-01 9 140100223 140100223 C T NDOR1 5'UTR 0.14 TCGA-C5-A1MJ-01 9 35093900 35093900 G A PIGO Silent p.I259I 0.07 TCGA-C5-A1MJ-01 9 73225620 73225620 C T TRPM3 Missense_Mutation p.E846K 0.19 deleterious(0.04) benign(0.108) TCGA-C5-A1MJ-01 9 96062406 96062406 C T WNK2 Silent p.L2100L 0.23 TCGA-C5-A1MJ-01 X 110980018 110980018 C T ALG13 Missense_Mutation p.A869V 0.06 tolerated(0.12) benign(0.003) TCGA-C5-A1MJ-01 X 153247431 153247431 G A TMEM187 5'UTR 0.25 TCGA-C5-A1MJ-01 X 153695476 153695476 G A PLXNA3 Missense_Mutation p.G1062S 0.23 tolerated(0.14) possibly_damaging(0.746) TCGA-C5-A1MJ-01 X 27840298 27840298 T G MAGEB10 Missense_Mutation p.L292W 0.11 tolerated(0.09) probably_damaging(0.982) TCGA-C5-A1MJ-01 X 47106743 47106743 G A USP11 Missense_Mutation p.E864K 0.10 tolerated(0.71) benign(0.012) TCGA-C5-A1MJ-01 X 48780350 48780350 G A OTUD5 3'UTR 0.24 TCGA-C5-A1MJ-01 X 73962794 73962794 C T KIAA2022 Missense_Mutation p.R533H 0.10 deleterious(0) probably_damaging(1) TCGA-C5-A1MJ-01 X 9707573 9707573 G C GPR143 Missense_Mutation p.Q358E 0.10 tolerated_low_confidence(1) benign(0.007) TCGA-C5-A1MK-01 10 101953849 101953849 G A CHUK Silent p.L622L 0.30 TCGA-C5-A1MK-01 10 103990664 103990664 G A PITX3 Silent p.F172F 0.26 TCGA-C5-A1MK-01 10 103990725 103990725 G T PITX3 Nonsense_Mutation p.S152* 0.31 TCGA-C5-A1MK-01 10 104139119 104139119 G C GBF1 Missense_Mutation p.E1524Q 0.28 tolerated(0.09) benign(0.115) TCGA-C5-A1MK-01 10 112262487 112262487 G A DUSP5 Missense_Mutation p.E130K 0.21 deleterious(0.02) possibly_damaging(0.627) TCGA-C5-A1MK-01 10 124172482 124172482 G A PLEKHA1 Missense_Mutation p.R130H 0.15 tolerated(0.14) benign(0.022) TCGA-C5-A1MK-01 10 127519173 127519175 GAT - BCCIP In_Frame_Del p.D122del 0.21 TCGA-C5-A1MK-01 10 129216661 129216661 G A DOCK1 Silent p.E1495E 0.37 TCGA-C5-A1MK-01 10 13320223 13320223 C G PHYH 3'UTR 0.23 TCGA-C5-A1MK-01 10 26856371 26856371 C G APBB1IP Nonsense_Mutation p.S652* 0.39 TCGA-C5-A1MK-01 10 69407184 69407184 G C CTNNA3 Missense_Mutation p.L30V 0.19 deleterious(0) possibly_damaging(0.694) TCGA-C5-A1MK-01 10 70043943 70043943 C T PBLD Silent p.L286L 0.33 TCGA-C5-A1MK-01 10 70066543 70066543 G A PBLD Missense_Mutation p.P20L 0.19 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MK-01 10 70992572 70992572 G A HKDC1 Silent p.L93L 0.20 TCGA-C5-A1MK-01 10 71899836 71899836 G C TYSND1 Missense_Mutation p.F515L 0.21 deleterious(0) probably_damaging(0.969) TCGA-C5-A1MK-01 10 72462221 72462221 G A ADAMTS14 Missense_Mutation p.E226K 0.34 tolerated(0.2) benign(0.354) TCGA-C5-A1MK-01 10 74884842 74884842 C G NUDT13 Intron 0.27 TCGA-C5-A1MK-01 10 74884862 74884862 C T NUDT13 Intron 0.25 TCGA-C5-A1MK-01 10 81373900 81373900 G A SFTPA1 3'UTR 0.22 TCGA-C5-A1MK-01 10 91195879 91195879 G C SLC16A12 Nonsense_Mutation p.S409* 0.10 TCGA-C5-A1MK-01 10 91497950 91497950 G C KIF20B Missense_Mutation p.E1078Q 0.33 deleterious(0.01) probably_damaging(0.92) TCGA-C5-A1MK-01 10 99203046 99203046 C G EXOSC1 Missense_Mutation p.R57T 0.28 tolerated(0.25) benign(0.004) TCGA-C5-A1MK-01 11 1020730 1020730 C T MUC6 Silent p.P1198P 0.25 TCGA-C5-A1MK-01 11 10602102 10602102 G C MRVI1 Missense_Mutation p.Q799E 0.30 tolerated(0.22) benign(0.019) TCGA-C5-A1MK-01 11 108160402 108160402 G A ATM Missense_Mutation p.R1437K 0.44 deleterious(0.02) benign(0.255) TCGA-C5-A1MK-01 11 108380360 108380360 G A EXPH5 Silent p.I1958I 0.38 TCGA-C5-A1MK-01 11 113661424 113661424 G A ATF4P4 RNA 0.46 TCGA-C5-A1MK-01 11 11398878 11398878 G A GALNT18 Silent p.I276I 0.15 TCGA-C5-A1MK-01 11 16877407 16877407 G A PLEKHA7 Silent p.V120V 0.17 TCGA-C5-A1MK-01 11 17409138 17409138 G C KCNJ11 Missense_Mutation p.I167M 0.50 tolerated(0.63) probably_damaging(0.949) TCGA-C5-A1MK-01 11 17793409 17793409 C T KCNC1 Silent p.F256F 0.25 TCGA-C5-A1MK-01 11 18743564 18743564 G A IGSF22 Missense_Mutation p.S45L 0.35 tolerated(0.1) benign(0.004) TCGA-C5-A1MK-01 11 248982 248982 G C PSMD13 Silent p.L235L 0.35 TCGA-C5-A1MK-01 11 33079605 33079605 G A TCP11L1 Missense_Mutation p.M186I 0.33 tolerated(0.34) benign(0.012) TCGA-C5-A1MK-01 11 47283409 47283409 G C NR1H3 Intron 0.28 TCGA-C5-A1MK-01 11 47296120 47296120 G A MADD Silent p.P23P 0.22 TCGA-C5-A1MK-01 11 57004581 57004581 G C APLNR 5'UTR 0.25 TCGA-C5-A1MK-01 11 59828641 59828641 C T MS4A3 Missense_Mutation p.S3F 0.17 deleterious(0) probably_damaging(0.98) TCGA-C5-A1MK-01 11 61919295 61919295 C G INCENP Silent p.L868L 0.18 TCGA-C5-A1MK-01 11 62488794 62488794 C T HNRNPUL2 Silent p.R528R 0.22 TCGA-C5-A1MK-01 11 67288598 67288598 C G CABP2 Missense_Mutation p.D93H 0.40 deleterious(0) probably_damaging(1) TCGA-C5-A1MK-01 11 68153789 68153789 G A LRP5 Missense_Mutation p.E341K 0.27 tolerated(0.19) benign(0.019) TCGA-C5-A1MK-01 11 71724989 71724989 G A NUMA1 Missense_Mutation p.S1187L 0.45 benign(0.355) TCGA-C5-A1MK-01 11 77412845 77412845 C T RSF1 Missense_Mutation p.D477N 0.31 deleterious_low_confidence(0.01) benign(0.253) TCGA-C5-A1MK-01 11 92534124 92534124 G A FAT3 Missense_Mutation p.D2649N 0.33 probably_damaging(0.992) TCGA-C5-A1MK-01 11 9424908 9424908 G C IPO7 Silent p.V52V 0.29 TCGA-C5-A1MK-01 11 94533423 94533423 G A AMOTL1 Missense_Mutation p.R356K 0.52 tolerated(0.1) possibly_damaging(0.48) TCGA-C5-A1MK-01 12 102120186 102120186 C T CHPT1 Intron 0.20 TCGA-C5-A1MK-01 12 108942982 108942982 G A SART3 Silent p.I107I 0.24 TCGA-C5-A1MK-01 12 109654655 109654655 C T ACACB Missense_Mutation p.S1165F 0.17 deleterious(0.04) possibly_damaging(0.797) TCGA-C5-A1MK-01 12 120541722 120541722 G A RAB35 Silent p.F45F 0.17 TCGA-C5-A1MK-01 12 120585024 120585024 C G GCN1L1 Missense_Mutation p.Q1593H 0.26 probably_damaging(0.948) TCGA-C5-A1MK-01 12 12291357 12291358 - T LRP6 Frame_Shift_Ins p.I1170Nfs*2 0.20 TCGA-C5-A1MK-01 12 12291406 12291406 C G LRP6 Missense_Mutation p.E1154Q 0.27 tolerated(0.07) benign(0.006) TCGA-C5-A1MK-01 12 21621553 21621553 G A PYROXD1 Missense_Mutation p.M456I 0.24 deleterious(0.03) benign(0.015) TCGA-C5-A1MK-01 12 45725117 45725117 G A ANO6 Missense_Mutation p.D85N 0.15 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MK-01 12 45725130 45725130 G A ANO6 Missense_Mutation p.R89K 0.25 tolerated(0.11) benign(0.014) TCGA-C5-A1MK-01 12 56726779 56726779 G A PAN2 Silent p.L34L 0.20 TCGA-C5-A1MK-01 12 58121432 58121432 C T AGAP2-AS1 Silent p.L219L 0.33 TCGA-C5-A1MK-01 12 63544014 63544014 G A AVPR1A Silent p.R201R 0.24 TCGA-C5-A1MK-01 12 70954692 70954692 G A PTPRB Silent p.L1397L 0.31 TCGA-C5-A1MK-01 12 7301773 7301773 G T CLSTN3 Missense_Mutation p.D685Y 0.21 deleterious(0) possibly_damaging(0.88) TCGA-C5-A1MK-01 12 78571090 78571090 C T NAV3 Missense_Mutation p.S1765L 0.28 deleterious(0.02) benign(0.149) TCGA-C5-A1MK-01 12 86373204 86373204 C T MGAT4C Missense_Mutation p.E434K 0.32 tolerated(0.81) benign(0.002) TCGA-C5-A1MK-01 12 86373637 86373637 C A MGAT4C Missense_Mutation p.L289F 0.31 deleterious(0.03) probably_damaging(0.956) TCGA-C5-A1MK-01 13 103257205 103257205 G C TPP2 Silent p.V76V 0.05 TCGA-C5-A1MK-01 13 114469200 114469200 G A TMEM255B Silent p.V53V 0.12 TCGA-C5-A1MK-01 13 115067351 115067351 G A UPF3A Missense_Mutation p.E385K 0.17 deleterious(0.01) probably_damaging(0.947) TCGA-C5-A1MK-01 13 20357054 20357054 C G PSPC1 5'UTR 0.35 TCGA-C5-A1MK-01 13 28122532 28122532 C T LNX2 Silent p.L671L 0.33 TCGA-C5-A1MK-01 13 28866564 28866564 G A PAN3 Missense_Mutation p.E857K 0.05 deleterious(0) probably_damaging(0.993) TCGA-C5-A1MK-01 13 29012465 29012465 C T FLT1 Missense_Mutation p.V136I 0.24 tolerated(0.91) benign(0.004) TCGA-C5-A1MK-01 13 41814474 41814474 C T MTRF1 Missense_Mutation p.E265K 0.14 tolerated(0.57) possibly_damaging(0.842) TCGA-C5-A1MK-01 13 44455648 44455648 G A LACC1 Missense_Mutation p.G176E 0.21 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MK-01 13 52604876 52604876 C T UTP14C Missense_Mutation p.R646C 0.25 tolerated(0.09) benign(0.052) TCGA-C5-A1MK-01 13 79942903 79942903 C T RBM26 Missense_Mutation p.R286K 0.19 tolerated(0.2) possibly_damaging(0.774) TCGA-C5-A1MK-01 13 88329227 88329227 G C SLITRK5 Missense_Mutation p.L528F 0.23 tolerated(0.16) possibly_damaging(0.79) TCGA-C5-A1MK-01 13 98654945 98654945 G C IPO5 Missense_Mutation p.R432T 0.17 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MK-01 13 99361909 99361909 C G SLC15A1 Silent p.V328V 0.11 TCGA-C5-A1MK-01 14 103336564 103336564 C T TRAF3 Missense_Mutation p.S9F 0.20 deleterious_low_confidence(0.02) benign(0.158) TCGA-C5-A1MK-01 14 104571705 104571705 C T ASPG Missense_Mutation p.S364L 0.09 tolerated(0.24) benign(0.001) TCGA-C5-A1MK-01 14 105916392 105916392 C T MTA1 Intron 0.14 TCGA-C5-A1MK-01 14 20528262 20528262 G C OR4L1 Missense_Mutation p.R20P 0.22 tolerated(0.12) benign(0) TCGA-C5-A1MK-01 14 22891575 22891575 C G TRDV2 Missense_Mutation p.F13L 0.58 tolerated(0.18) benign(0.018) TCGA-C5-A1MK-01 14 22891929 22891929 G C TRDV2 Missense_Mutation p.D81H 0.24 tolerated(0.09) possibly_damaging(0.796) TCGA-C5-A1MK-01 14 22891972 22891972 T C TRDV2 Missense_Mutation p.V95A 0.21 tolerated(0.24) benign(0.037) TCGA-C5-A1MK-01 14 22891979 22891979 G A TRDV2 Silent p.K97K 0.21 TCGA-C5-A1MK-01 14 39868938 39868938 C T FBXO33 Missense_Mutation p.D484N 0.24 tolerated(0.47) benign(0) TCGA-C5-A1MK-01 14 50458976 50458976 C T C14orf182 Intron 0.06 TCGA-C5-A1MK-01 14 52735042 52735042 C T PTGDR Silent p.G170G 0.20 TCGA-C5-A1MK-01 14 53522414 53522414 C T DDHD1 Missense_Mutation p.E737K 0.24 deleterious(0.03) possibly_damaging(0.449) TCGA-C5-A1MK-01 14 60601021 60601021 G C PCNXL4 3'UTR 0.38 TCGA-C5-A1MK-01 14 65208765 65208765 G A PLEKHG3 Missense_Mutation p.E788K 0.30 deleterious(0) possibly_damaging(0.894) TCGA-C5-A1MK-01 14 65209118 65209118 G C PLEKHG3 Missense_Mutation p.K905N 0.23 tolerated(0.29) benign(0.302) TCGA-C5-A1MK-01 14 69864951 69864951 C G ERH 5'UTR 0.33 TCGA-C5-A1MK-01 14 74876329 74876329 G C SYNDIG1L Missense_Mutation p.S40C 0.29 deleterious(0.01) possibly_damaging(0.498) TCGA-C5-A1MK-01 15 101561369 101561369 C T LRRK1 Missense_Mutation p.S574L 0.21 deleterious(0.03) benign(0.06) TCGA-C5-A1MK-01 15 101598292 101598292 C G LRRK1 Nonsense_Mutation p.S1542* 0.18 TCGA-C5-A1MK-01 15 40582813 40582813 C A PLCB2 Missense_Mutation p.M1058I 0.18 tolerated(0.43) benign(0.006) TCGA-C5-A1MK-01 15 43748527 43748527 C A TP53BP1 Missense_Mutation p.S760I 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.802) TCGA-C5-A1MK-01 15 45411371 45411371 G C DUOXA1 Nonsense_Mutation p.S322* 0.11 TCGA-C5-A1MK-01 15 48056112 48056112 G A SEMA6D Silent p.E271E 0.23 TCGA-C5-A1MK-01 15 59009816 59009816 C T ADAM10 Missense_Mutation p.E56K 0.17 tolerated(0.57) benign(0.005) TCGA-C5-A1MK-01 15 67571776 67571776 C G IQCH Missense_Mutation p.Q105E 0.20 tolerated(1) benign(0) TCGA-C5-A1MK-01 15 69718494 69718494 G A KIF23 Missense_Mutation p.E274K 0.20 deleterious(0) probably_damaging(0.985) TCGA-C5-A1MK-01 15 74637437 74637437 G A CYP11A1 Silent p.S191S 0.12 TCGA-C5-A1MK-01 15 76634057 76634057 C T ISL2 Intron 0.11 TCGA-C5-A1MK-01 15 91803606 91803606 G A SV2B Missense_Mutation p.M325I 0.22 tolerated(0.28) benign(0.244) TCGA-C5-A1MK-01 16 114768 114768 G C RHBDF1 Missense_Mutation p.I59M 0.27 tolerated(0.24) benign(0.003) TCGA-C5-A1MK-01 16 12155423 12155423 G A SNX29 Missense_Mutation p.S388N 0.22 tolerated_low_confidence(0.1) benign(0.056) TCGA-C5-A1MK-01 16 2017754 2017754 G C RNF151 Missense_Mutation p.E60Q 0.23 tolerated(0.12) benign(0.063) TCGA-C5-A1MK-01 16 21964776 21964776 C T UQCRC2 Missense_Mutation p.S11L 0.29 tolerated_low_confidence(0.23) benign(0.003) TCGA-C5-A1MK-01 16 25232864 25232864 C T AQP8 Missense_Mutation p.S116L 0.21 deleterious(0.01) possibly_damaging(0.794) TCGA-C5-A1MK-01 16 30016734 30016734 G A INO80E Missense_Mutation p.D236N 0.30 tolerated(0.11) probably_damaging(0.992) TCGA-C5-A1MK-01 16 30581151 30581151 C T ZNF688 3'UTR 0.22 TCGA-C5-A1MK-01 16 4016390 4016390 C G ADCY9 Missense_Mutation p.D1150H 0.20 deleterious(0) benign(0.045) TCGA-C5-A1MK-01 16 58712778 58712778 G A SLC38A7 Silent p.I97I 0.24 TCGA-C5-A1MK-01 16 67318975 67318975 G C PLEKHG4 Missense_Mutation p.Q684H 0.28 tolerated(0.13) benign(0.401) TCGA-C5-A1MK-01 16 68725654 68725654 C T CDH3 Silent p.F609F 0.26 TCGA-C5-A1MK-01 16 75642774 75642774 C G ADAT1 Missense_Mutation p.D386H 0.29 tolerated(0.09) probably_damaging(0.99) TCGA-C5-A1MK-01 16 88706364 88706364 C A IL17C Missense_Mutation p.R160S 0.31 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MK-01 17 10322273 10322273 C T MYH8 Missense_Mutation p.M95I 0.27 deleterious(0.01) benign(0.35) TCGA-C5-A1MK-01 17 10360825 10360825 G C MYH4 Silent p.P603P 0.22 TCGA-C5-A1MK-01 17 10401063 10401063 C T MYH1 Silent p.R1451R 0.08 TCGA-C5-A1MK-01 17 10401064 10401064 C T MYH1 Missense_Mutation p.R1451K 0.09 tolerated(0.16) benign(0.032) TCGA-C5-A1MK-01 17 10411242 10411242 C G MYH1 Missense_Mutation p.K643N 0.21 deleterious(0) possibly_damaging(0.903) TCGA-C5-A1MK-01 17 10448678 10448678 G T MYH2 Missense_Mutation p.Q164K 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-C5-A1MK-01 17 11573101 11573101 G A DNAH9 Missense_Mutation p.V1115I 0.24 benign(0.285) TCGA-C5-A1MK-01 17 19284297 19284297 C T MAPK7 Missense_Mutation p.R259C 0.13 deleterious(0) unknown(0) TCGA-C5-A1MK-01 17 30302566 30302566 C G SUZ12 Silent p.L219L 0.19 TCGA-C5-A1MK-01 17 33690789 33690789 G C SLFN11 Missense_Mutation p.S13C 0.25 tolerated(0.05) benign(0.023) TCGA-C5-A1MK-01 17 33849457 33849457 C T SLFN12L 5'UTR 0.22 TCGA-C5-A1MK-01 17 38024615 38024615 G A ZPBP2 Missense_Mutation p.R3Q 0.28 tolerated_low_confidence(0.1) benign(0.054) TCGA-C5-A1MK-01 17 39672427 39672427 C G KRT15 Missense_Mutation p.E277Q 0.22 deleterious(0) probably_damaging(0.962) TCGA-C5-A1MK-01 17 39881183 39881183 C T HAP1 Missense_Mutation p.E544K 0.30 deleterious(0) possibly_damaging(0.486) TCGA-C5-A1MK-01 17 3989912 3989912 G A ZZEF1 Silent p.L794L 0.18 TCGA-C5-A1MK-01 17 40927461 40927461 G A VPS25 Missense_Mutation p.E106K 0.34 deleterious(0) benign(0.074) TCGA-C5-A1MK-01 17 40948022 40948022 C G WNK4 Missense_Mutation p.F1134L 0.12 tolerated(0.71) probably_damaging(0.951) TCGA-C5-A1MK-01 17 40948044 40948044 C T WNK4 Missense_Mutation p.R1142W 0.11 deleterious(0) probably_damaging(0.994) TCGA-C5-A1MK-01 17 4576054 4576054 C T PELP1 Silent p.G744G 0.31 TCGA-C5-A1MK-01 17 46153372 46153372 C A CBX1 Missense_Mutation p.K103N 0.15 deleterious(0.01) possibly_damaging(0.711) TCGA-C5-A1MK-01 17 46153539 46153539 C G CBX1 Missense_Mutation p.E48Q 0.28 tolerated(0.26) possibly_damaging(0.502) TCGA-C5-A1MK-01 17 48447381 48447381 G A MRPL27 Intron 0.13 TCGA-C5-A1MK-01 17 48447382 48447382 G A MRPL27 Intron 0.13 TCGA-C5-A1MK-01 17 4848125 4848125 A G RNF167 Silent p.Q289Q 0.27 TCGA-C5-A1MK-01 17 55183327 55183327 G C AKAP1 Missense_Mutation p.D168H 0.27 deleterious(0.01) benign(0.245) TCGA-C5-A1MK-01 17 56650663 56650663 C T TEX14 Silent p.L1176L 0.06 TCGA-C5-A1MK-01 17 57139987 57139987 G T TRIM37 Missense_Mutation p.P295T 0.23 deleterious(0.05) probably_damaging(0.994) TCGA-C5-A1MK-01 17 66890334 66890334 C G ABCA8 Missense_Mutation p.E966Q 0.26 tolerated(0.46) benign(0.068) TCGA-C5-A1MK-01 17 68128231 68128231 G A KCNJ16 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0.04) benign(0.164) TCGA-C5-A1MK-01 17 76183420 76183420 G A AFMID 5'Flank 0.25 TCGA-C5-A1MK-01 17 7701881 7701881 A T DNAH2 Nonsense_Mutation p.K2802* 0.20 TCGA-C5-A1MK-01 17 79234147 79234147 G A SLC38A10 Silent p.T393T 0.14 TCGA-C5-A1MK-01 18 18586468 18586468 G A ROCK1 Nonsense_Mutation p.Q577* 0.24 TCGA-C5-A1MK-01 18 21109337 21109337 C T NPC1 3'Flank 0.36 TCGA-C5-A1MK-01 18 21705472 21705472 C T TTC39C Missense_Mutation p.L460F 0.05 deleterious(0.01) benign(0.277) TCGA-C5-A1MK-01 18 54591290 54591290 C T WDR7 Silent p.L1222L 0.21 TCGA-C5-A1MK-01 18 619248 619248 G A CLUL1 Missense_Mutation p.E48K 0.17 deleterious(0.01) benign(0.056) TCGA-C5-A1MK-01 19 1008173 1008173 C T GRIN3B Silent p.L783L 0.40 TCGA-C5-A1MK-01 19 11258507 11258507 C T SPC24 Silent p.G158G 0.24 TCGA-C5-A1MK-01 19 11942935 11942935 A C ZNF440 Missense_Mutation p.K315T 0.15 deleterious(0.02) benign(0.21) TCGA-C5-A1MK-01 19 11944199 11944199 A G ZNF440 3'UTR 0.14 TCGA-C5-A1MK-01 19 12461293 12461293 C G ZNF442 Missense_Mutation p.R369T 0.29 tolerated(0.06) benign(0.12) TCGA-C5-A1MK-01 19 12783679 12783679 G C WDR83 Silent p.V175V 0.33 TCGA-C5-A1MK-01 19 19626097 19626097 C T TSSK6 Missense_Mutation p.R47Q 0.35 tolerated(0.19) benign(0.019) TCGA-C5-A1MK-01 19 3110178 3110178 C G GNA11 Missense_Mutation p.I56M 0.38 deleterious(0.03) probably_damaging(0.997) TCGA-C5-A1MK-01 19 33183126 33183126 C T NUDT19 Missense_Mutation p.P87L 0.24 deleterious(0) possibly_damaging(0.851) TCGA-C5-A1MK-01 19 3762719 3762719 C T MRPL54 Silent p.F7F 0.05 TCGA-C5-A1MK-01 19 39219659 39219659 C T ACTN4 Silent p.I814I 0.15 TCGA-C5-A1MK-01 19 39219713 39219713 C T ACTN4 Silent p.I832I 0.17 TCGA-C5-A1MK-01 19 39219929 39219929 G T ACTN4 Nonsense_Mutation p.E865* 0.12 TCGA-C5-A1MK-01 19 43528938 43528938 A G PSG11 Missense_Mutation p.V112A 0.02 deleterious(0.01) probably_damaging(0.983) TCGA-C5-A1MK-01 19 44352686 44352686 G A ZNF283 Missense_Mutation p.E645K 0.15 tolerated(0.09) benign(0.011) TCGA-C5-A1MK-01 19 44352764 44352764 G C ZNF283 Missense_Mutation p.E671Q 0.25 tolerated(1) benign(0.04) TCGA-C5-A1MK-01 19 44536300 44536300 C T ZNF222 Missense_Mutation p.S198L 0.15 deleterious(0.04) benign(0.444) TCGA-C5-A1MK-01 19 44536308 44536308 C G ZNF222 Missense_Mutation p.H201D 0.16 tolerated(0.57) benign(0.242) TCGA-C5-A1MK-01 19 45281228 45281228 G A CBLC Missense_Mutation p.E14K 0.19 deleterious(0.03) benign(0.033) TCGA-C5-A1MK-01 19 50098327 50098327 C G PRR12 Missense_Mutation p.F245L 0.18 benign(0.294) TCGA-C5-A1MK-01 19 50168985 50168985 G A IRF3 5'UTR 0.31 TCGA-C5-A1MK-01 19 50411753 50411753 C T NUP62 Missense_Mutation p.E438K 0.24 deleterious(0) benign(0.168) TCGA-C5-A1MK-01 19 50413062 50413062 C G NUP62 Translation_Start_Site p.M1? 0.14 tolerated(0.11) unknown(0) TCGA-C5-A1MK-01 19 51228588 51228588 C T CLEC11A Missense_Mutation p.S279L 0.24 deleterious_low_confidence(0.01) benign(0.025) TCGA-C5-A1MK-01 19 51914460 51914460 C G SIGLEC10 Missense_Mutation p.E663Q 0.14 tolerated(0.13) benign(0.098) TCGA-C5-A1MK-01 19 52919997 52919997 C G ZNF528 3'UTR 0.30 TCGA-C5-A1MK-01 19 53269068 53269068 G A ZNF600 Silent p.F647F 0.18 TCGA-C5-A1MK-01 19 53960273 53960273 G A ZNF761 RNA 0.25 TCGA-C5-A1MK-01 19 54968077 54968077 C G LENG8 Missense_Mutation p.P570A 0.12 tolerated(0.25) possibly_damaging(0.48) TCGA-C5-A1MK-01 19 55739871 55739871 C T AC010327.2 3'UTR 0.29 TCGA-C5-A1MK-01 19 57301275 57301275 C T ZIM2 Missense_Mutation p.E148K 0.17 tolerated(0.14) benign(0.005) TCGA-C5-A1MK-01 19 58004285 58004285 C G ZNF419 Silent p.L121L 0.11 TCGA-C5-A1MK-01 19 581370 581370 C G BSG Nonsense_Mutation p.S283* 0.26 TCGA-C5-A1MK-01 19 5866482 5866482 G A FUT5 3'UTR 0.21 TCGA-C5-A1MK-01 19 9060718 9060718 G A MUC16 Missense_Mutation p.P8910S 0.19 unknown(0) TCGA-C5-A1MK-01 19 9524429 9524429 C T ZNF266 Missense_Mutation p.R391K 0.21 tolerated(0.91) benign(0.018) TCGA-C5-A1MK-01 1 111726958 111726958 C T CEPT1 3'UTR 0.13 TCGA-C5-A1MK-01 1 114498227 114498227 G C HIPK1 Missense_Mutation p.E455Q 0.17 deleterious(0) probably_damaging(1) TCGA-C5-A1MK-01 1 114505025 114505025 C T HIPK1 Nonsense_Mutation p.Q690* 0.17 TCGA-C5-A1MK-01 1 118463026 118463026 C G GDAP2 5'UTR 0.29 TCGA-C5-A1MK-01 1 1223059 1223059 G A SCNN1D Missense_Mutation p.G469D 0.14 deleterious(0.04) benign(0.283) TCGA-C5-A1MK-01 1 1421179 1421179 C T ATAD3B Silent p.L308L 0.20 TCGA-C5-A1MK-01 1 145438739 145438739 C G TXNIP 5'UTR 0.24 TCGA-C5-A1MK-01 1 145438774 145438774 C G TXNIP 5'UTR 0.16 TCGA-C5-A1MK-01 1 152187617 152187617 C G HRNR Missense_Mutation p.G2163A 0.05 unknown(0) TCGA-C5-A1MK-01 1 154296858 154296858 G A AQP10 Missense_Mutation p.E270K 0.25 tolerated(0.08) benign(0.014) TCGA-C5-A1MK-01 1 154310131 154310131 C T ATP8B2 Intron 0.13 TCGA-C5-A1MK-01 1 155319338 155319338 C T ASH1L Silent p.K2472K 0.21 TCGA-C5-A1MK-01 1 15863294 15863294 G T DNAJC16 Nonsense_Mutation p.E187* 0.16 TCGA-C5-A1MK-01 1 159174570 159174570 C A DARC 5'Flank 0.30 TCGA-C5-A1MK-01 1 160319399 160319399 G C NCSTN Missense_Mutation p.L125F 0.17 tolerated(0.7) benign(0.007) TCGA-C5-A1MK-01 1 160651194 160651194 C T CD48 Silent p.L150L 0.19 TCGA-C5-A1MK-01 1 161018558 161018558 C G ARHGAP30 Missense_Mutation p.E751D 0.04 tolerated_low_confidence(0.15) benign(0.034) TCGA-C5-A1MK-01 1 161018907 161018907 C G ARHGAP30 Missense_Mutation p.G635A 0.03 deleterious_low_confidence(0.02) benign(0.013) TCGA-C5-A1MK-01 1 161166037 161166037 G C ADAMTS4 Silent p.V338V 0.14 TCGA-C5-A1MK-01 1 167973897 167973897 C T DCAF6 Missense_Mutation p.S415F 0.16 deleterious_low_confidence(0.01) benign(0.074) TCGA-C5-A1MK-01 1 17084996 17084996 C T MST1L RNA 0.04 TCGA-C5-A1MK-01 1 183711264 183711264 C T RGL1 5'UTR 0.17 TCGA-C5-A1MK-01 1 186064492 186064492 G A HMCN1 Missense_Mutation p.R3471K 0.20 benign(0.006) TCGA-C5-A1MK-01 1 186276247 186276247 G A PRG4 Missense_Mutation p.E466K 0.19 unknown(0) TCGA-C5-A1MK-01 1 19413195 19413195 C G UBR4 Missense_Mutation p.D4889H 0.14 probably_damaging(0.999) TCGA-C5-A1MK-01 1 201185875 201185875 C T IGFN1 Missense_Mutation p.P3197S 0.15 possibly_damaging(0.499) TCGA-C5-A1MK-01 1 201843430 201843430 C T IPO9 Silent p.I921I 0.13 TCGA-C5-A1MK-01 1 202128667 202128667 C T PTPN7 Intron 0.21 TCGA-C5-A1MK-01 1 202698923 202698923 G C KDM5B Nonsense_Mutation p.S1470* 0.18 TCGA-C5-A1MK-01 1 203819761 203819761 C T ZC3H11A Silent p.L686L 0.22 TCGA-C5-A1MK-01 1 203821436 203821436 C T ZC3H11A Missense_Mutation p.S781L 0.13 tolerated(0.07) benign(0.331) TCGA-C5-A1MK-01 1 205069166 205069166 G C RBBP5 Missense_Mutation p.S260C 0.04 deleterious(0) probably_damaging(0.99) TCGA-C5-A1MK-01 1 214170608 214170608 G C PROX1 Missense_Mutation p.E244Q 0.14 tolerated(0.57) benign(0.385) TCGA-C5-A1MK-01 1 214170875 214170875 G C PROX1 Missense_Mutation p.E333Q 0.27 tolerated(0.14) benign(0.011) TCGA-C5-A1MK-01 1 214171342 214171342 G C PROX1 Missense_Mutation p.L488F 0.19 deleterious(0.02) probably_damaging(0.933) TCGA-C5-A1MK-01 1 227335194 227335194 C G CDC42BPA Missense_Mutation p.D254H 0.25 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MK-01 1 228563770 228563770 C T OBSCN Silent p.L8573L 0.19 TCGA-C5-A1MK-01 1 236717916 236717916 C T HEATR1 Missense_Mutation p.M2020I 0.13 deleterious(0.01) possibly_damaging(0.824) TCGA-C5-A1MK-01 1 237947567 237947567 G A RYR2 Silent p.K4185K 0.21 TCGA-C5-A1MK-01 1 247752501 247752501 C G OR2G2 Missense_Mutation p.F280L 0.24 deleterious(0.05) benign(0.168) TCGA-C5-A1MK-01 1 247978612 247978612 G C OR14A16 Silent p.V140V 0.10 TCGA-C5-A1MK-01 1 27059194 27059194 C T ARID1A Nonsense_Mutation p.Q611* 0.23 TCGA-C5-A1MK-01 1 27100988 27100988 C T ARID1A Nonsense_Mutation p.Q1424* 0.22 TCGA-C5-A1MK-01 1 27190424 27190424 G A SFN Missense_Mutation p.E241K 0.48 deleterious_low_confidence(0.03) unknown(0) TCGA-C5-A1MK-01 1 3301735 3301735 G A PRDM16 Missense_Mutation p.S153N 0.21 tolerated(1) benign(0.001) TCGA-C5-A1MK-01 1 3703465 3703465 C T LRRC47 Missense_Mutation p.R342Q 0.18 deleterious(0.03) possibly_damaging(0.842) TCGA-C5-A1MK-01 1 38444715 38444715 G A SF3A3 Silent p.L258L 0.17 TCGA-C5-A1MK-01 1 39916808 39916808 G A MACF1 Silent p.V4722V 0.20 TCGA-C5-A1MK-01 1 41283021 41283021 C T KCNQ4 Silent p.L133L 0.21 TCGA-C5-A1MK-01 1 44054405 44054405 G A PTPRF Missense_Mutation p.R228H 0.15 deleterious(0) probably_damaging(0.993) TCGA-C5-A1MK-01 1 45213065 45213065 G C KIF2C Missense_Mutation p.D59H 0.16 deleterious(0.01) benign(0.396) TCGA-C5-A1MK-01 1 75037649 75037649 C T C1orf173 Missense_Mutation p.D1249N 0.49 tolerated(0.16) benign(0.007) TCGA-C5-A1MK-01 1 91742578 91742578 G A HFM1 Missense_Mutation p.H1145Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MK-01 1 91778974 91778974 C G HFM1 Missense_Mutation p.R1108T 0.25 tolerated(0.07) benign(0.004) TCGA-C5-A1MK-01 1 94996028 94996028 C T F3 Silent p.L292L 0.14 TCGA-C5-A1MK-01 1 9784049 9784049 G A PIK3CD Missense_Mutation p.E873K 0.21 deleterious(0) probably_damaging(0.914) TCGA-C5-A1MK-01 20 1286355 1286355 G A SNPH Missense_Mutation p.R381H 0.19 tolerated(0.63) benign(0.001) TCGA-C5-A1MK-01 20 30226891 30226891 C G COX4I2 Nonsense_Mutation p.S24* 0.14 TCGA-C5-A1MK-01 20 30436311 30436311 G A FOXS1 5'Flank 0.40 TCGA-C5-A1MK-01 20 30674508 30674508 G C HCK Missense_Mutation p.E305Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MK-01 20 32256040 32256040 G C ACTL10 Nonstop_Mutation p.*246Sext*18 0.18 TCGA-C5-A1MK-01 20 34797677 34797677 G A EPB41L1 Missense_Mutation p.D646N 0.29 deleterious(0.03) benign(0.159) TCGA-C5-A1MK-01 20 35749320 35749320 C T MROH8 Missense_Mutation p.G726E 0.16 deleterious(0) probably_damaging(1) TCGA-C5-A1MK-01 20 39832617 39832617 C G ZHX3 Missense_Mutation p.D314H 0.38 deleterious(0) probably_damaging(1) TCGA-C5-A1MK-01 20 40727169 40727169 G A PTPRT Silent p.F1246F 0.27 TCGA-C5-A1MK-01 20 4764948 4764948 C G RASSF2 Missense_Mutation p.E318Q 0.19 tolerated(0.63) possibly_damaging(0.649) TCGA-C5-A1MK-01 20 49576778 49576778 C G MOCS3 3'UTR 0.39 TCGA-C5-A1MK-01 20 58519380 58519380 G A FAM217B Missense_Mutation p.D128N 0.15 tolerated(0.12) benign(0.054) TCGA-C5-A1MK-01 20 61918992 61918992 G A ARFGAP1 Missense_Mutation p.E338K 0.11 deleterious(0.01) possibly_damaging(0.874) TCGA-C5-A1MK-01 20 62729390 62729390 C T OPRL1 Missense_Mutation p.R157C 0.16 deleterious(0) probably_damaging(0.959) TCGA-C5-A1MK-01 21 28210431 28210431 C A ADAMTS1 Missense_Mutation p.D791Y 0.16 deleterious(0.01) probably_damaging(1) TCGA-C5-A1MK-01 21 40630548 40630548 C G BRWD1 Missense_Mutation p.D646H 0.15 deleterious(0.04) benign(0.34) TCGA-C5-A1MK-01 21 41684283 41684283 G A DSCAM Missense_Mutation p.P596L 0.19 deleterious(0) probably_damaging(0.989) TCGA-C5-A1MK-01 22 20074120 20074120 G C DGCR8 Missense_Mutation p.D212H 0.23 deleterious(0) possibly_damaging(0.56) TCGA-C5-A1MK-01 22 30890146 30890146 C G SEC14L4 Missense_Mutation p.V191L 0.19 tolerated(0.2) benign(0.013) TCGA-C5-A1MK-01 22 36712675 36712675 C T MYH9 Missense_Mutation p.E423K 0.20 probably_damaging(0.941) TCGA-C5-A1MK-01 22 36718516 36718516 G A MYH9 Silent p.F221F 0.14 TCGA-C5-A1MK-01 22 39918236 39918236 C G ATF4 Missense_Mutation p.L229V 0.39 tolerated(0.34) benign(0.004) TCGA-C5-A1MK-01 22 43036172 43036172 C T ATP5L2 Missense_Mutation p.E37K 0.32 deleterious(0.04) benign(0.36) TCGA-C5-A1MK-01 22 45691457 45691457 G C UPK3A Missense_Mutation p.D241H 0.23 deleterious(0) probably_damaging(1) TCGA-C5-A1MK-01 22 50356425 50356425 C G PIM3 Silent p.L235L 0.05 TCGA-C5-A1MK-01 22 50960208 50960208 C G NCAPH2 Missense_Mutation p.L347V 0.26 tolerated(1) benign(0.002) TCGA-C5-A1MK-01 2 100903453 100903453 C T LONRF2 Missense_Mutation p.A665T 0.19 tolerated(1) benign(0.016) TCGA-C5-A1MK-01 2 120069238 120069238 G C C2orf76 Silent p.L88L 0.20 TCGA-C5-A1MK-01 2 127827588 127827588 G A BIN1 Nonsense_Mutation p.Q132* 0.14 TCGA-C5-A1MK-01 2 141243034 141243034 G C LRP1B Silent p.L3101L 0.24 TCGA-C5-A1MK-01 2 152226592 152226592 C T TNFAIP6 Silent p.F151F 0.27 TCGA-C5-A1MK-01 2 15432833 15432833 C T NBAS Missense_Mutation p.E1619K 0.41 tolerated(0.49) benign(0.036) TCGA-C5-A1MK-01 2 158390408 158390408 C G ACVR1C 3'UTR 0.36 TCGA-C5-A1MK-01 2 158977950 158977950 G A UPP2 Missense_Mutation p.D219N 0.26 tolerated(0.15) possibly_damaging(0.866) TCGA-C5-A1MK-01 2 169764723 169764723 G C G6PC2 3'Flank 0.43 TCGA-C5-A1MK-01 2 172648021 172648021 G A SLC25A12 Silent p.L509L 0.26 TCGA-C5-A1MK-01 2 179401691 179401691 G A TTN Missense_Mutation p.S33382L 0.40 TCGA-C5-A1MK-01 2 183860443 183860443 C T NCKAP1 Missense_Mutation p.A249T 0.29 tolerated(0.07) possibly_damaging(0.469) TCGA-C5-A1MK-01 2 196545334 196545334 C T SLC39A10 Missense_Mutation p.H190Y 0.29 deleterious(0.02) benign(0.114) TCGA-C5-A1MK-01 2 203155173 203155173 G A NOP58 Silent p.Q209Q 0.24 TCGA-C5-A1MK-01 2 204073911 204073911 C T NBEAL1 Nonsense_Mutation p.Q2522* 0.29 TCGA-C5-A1MK-01 2 207171629 207171629 G C ZDBF2 Missense_Mutation p.D793H 0.33 deleterious(0) probably_damaging(0.969) TCGA-C5-A1MK-01 2 21233619 21233619 C G APOB Missense_Mutation p.E2041Q 0.31 benign(0.005) TCGA-C5-A1MK-01 2 215645841 215645841 G A BARD1 Nonsense_Mutation p.Q253* 0.07 TCGA-C5-A1MK-01 2 215819966 215819966 G A ABCA12 Missense_Mutation p.S2118L 0.18 deleterious(0) probably_damaging(1) TCGA-C5-A1MK-01 2 215896725 215896725 G T ABCA12 Intron 0.38 TCGA-C5-A1MK-01 2 217347643 217347643 G C SMARCAL1 Missense_Mutation p.Q936H 0.26 tolerated(0.1) benign(0.169) TCGA-C5-A1MK-01 2 220108334 220108334 G A GLB1L 5'UTR 0.18 TCGA-C5-A1MK-01 2 220110704 220110704 G A STK16 5'UTR 0.15 TCGA-C5-A1MK-01 2 220112958 220112958 C T STK16 Missense_Mutation p.P234L 0.27 deleterious(0) probably_damaging(1) TCGA-C5-A1MK-01 2 225729288 225729288 C G DOCK10 Missense_Mutation p.K528N 0.29 deleterious(0) possibly_damaging(0.833) TCGA-C5-A1MK-01 2 228860227 228860227 C A SPHKAP Missense_Mutation p.M1544I 0.25 tolerated(0.06) benign(0.245) TCGA-C5-A1MK-01 2 232577886 232577886 G C PTMA 3'UTR 0.50 TCGA-C5-A1MK-01 2 46739702 46739702 C T ATP6V1E2 Missense_Mutation p.R50Q 0.06 deleterious(0.03) probably_damaging(0.981) TCGA-C5-A1MK-01 2 48808940 48808940 C T STON1-GTF2A1L Silent p.L390L 0.42 TCGA-C5-A1MK-01 2 55252291 55252291 G A RTN4 Missense_Mutation p.P982S 0.26 deleterious(0.03) probably_damaging(0.926) TCGA-C5-A1MK-01 2 55253040 55253040 G C RTN4 Missense_Mutation p.S732C 0.30 tolerated(0.11) benign(0.033) TCGA-C5-A1MK-01 2 61709528 61709528 G A XPO1 Missense_Mutation p.P987S 0.21 tolerated(0.11) benign(0.006) TCGA-C5-A1MK-01 2 69565691 69565691 G C GFPT1 Missense_Mutation p.Q404E 0.36 tolerated(0.41) possibly_damaging(0.666) TCGA-C5-A1MK-01 2 74762422 74762422 C G LOXL3 Missense_Mutation p.E526Q 0.22 tolerated(0.12) benign(0.011) TCGA-C5-A1MK-01 2 99992929 99992929 G A EIF5B Missense_Mutation p.E558K 0.19 benign(0.091) TCGA-C5-A1MK-01 3 101405524 101405524 G A RPL24 5'UTR 0.20 TCGA-C5-A1MK-01 3 108278654 108278654 C T KIAA1524 Missense_Mutation p.D655N 0.17 deleterious(0) probably_damaging(0.984) TCGA-C5-A1MK-01 3 113724430 113724430 G C KIAA1407 Missense_Mutation p.A598G 0.19 tolerated(0.06) benign(0.133) TCGA-C5-A1MK-01 3 124837625 124837625 C G SLC12A8 Silent p.L300L 0.17 TCGA-C5-A1MK-01 3 126139026 126139026 C T CCDC37 Nonsense_Mutation p.Q346* 0.12 TCGA-C5-A1MK-01 3 127642675 127642675 C T KBTBD12 Silent p.I257I 0.15 TCGA-C5-A1MK-01 3 132184866 132184866 C T DNAJC13 Silent p.L640L 0.18 TCGA-C5-A1MK-01 3 133647582 133647582 G A C3orf36 Silent p.L22L 0.23 TCGA-C5-A1MK-01 3 134329140 134329140 C T KY Missense_Mutation p.D266N 0.07 tolerated(0.27) benign(0.124) TCGA-C5-A1MK-01 3 137717751 137717751 C T CLDN18 Missense_Mutation p.S14L 0.16 deleterious(0.01) possibly_damaging(0.691) TCGA-C5-A1MK-01 3 137749999 137749999 C T CLDN18 3'UTR 0.13 TCGA-C5-A1MK-01 3 141917646 141917646 C A GK5 Nonsense_Mutation p.E181* 0.31 TCGA-C5-A1MK-01 3 149374821 149374821 G A WWTR1 Silent p.P91P 0.21 TCGA-C5-A1MK-01 3 152880788 152880788 C T RAP2B Silent p.R102R 0.19 TCGA-C5-A1MK-01 3 155551785 155551785 C T SLC33A1 Missense_Mutation p.E337K 0.17 deleterious(0.01) possibly_damaging(0.688) TCGA-C5-A1MK-01 3 160149569 160149569 G A SMC4 Missense_Mutation p.E1085K 0.20 tolerated(0.29) benign(0.007) TCGA-C5-A1MK-01 3 170786639 170786639 G A TNIK Missense_Mutation p.H1233Y 0.38 deleterious(0) probably_damaging(0.989) TCGA-C5-A1MK-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-C5-A1MK-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.14 tolerated(0.36) benign(0.4) TCGA-C5-A1MK-01 3 186364083 186364083 C T FETUB Missense_Mutation p.S214L 0.17 deleterious(0) probably_damaging(0.983) TCGA-C5-A1MK-01 3 33540121 33540121 C T CLASP2 3'UTR 0.19 TCGA-C5-A1MK-01 3 38674567 38674567 C T SCN5A Missense_Mutation p.E78K 0.18 tolerated(0.25) possibly_damaging(0.81) TCGA-C5-A1MK-01 3 3886968 3886968 G A LRRN1 Missense_Mutation p.A215T 0.25 tolerated(0.66) benign(0.003) TCGA-C5-A1MK-01 3 44636220 44636220 C G ZNF660 Missense_Mutation p.Q179E 0.27 tolerated(0.35) benign(0.353) TCGA-C5-A1MK-01 3 52825552 52825552 C T ITIH1 Silent p.I838I 0.25 TCGA-C5-A1MK-01 3 53346369 53346369 G A DCP1A Missense_Mutation p.R138W 0.23 deleterious(0.02) possibly_damaging(0.84) TCGA-C5-A1MK-01 3 56766438 56766438 G A ARHGEF3 Silent p.F384F 0.23 TCGA-C5-A1MK-01 3 58516240 58516240 G A ACOX2 Silent p.I315I 0.28 TCGA-C5-A1MK-01 3 62317015 62317015 G A C3orf14 Missense_Mutation p.E65K 0.12 deleterious(0.03) benign(0.11) TCGA-C5-A1MK-01 3 87302861 87302861 G C CHMP2B Splice_Site p.X178_splice 0.15 TCGA-C5-A1MK-01 3 87302931 87302931 G A CHMP2B Missense_Mutation p.E201K 0.18 tolerated(0.35) benign(0.027) TCGA-C5-A1MK-01 3 97851984 97851984 C T OR5H1 Missense_Mutation p.S148L 0.15 deleterious(0.01) benign(0.33) TCGA-C5-A1MK-01 4 120981237 120981237 C T MAD2L1 3'UTR 0.26 TCGA-C5-A1MK-01 4 121958175 121958175 G A NDNF Silent p.V317V 0.19 TCGA-C5-A1MK-01 4 140640513 140640513 C G MAML3 Missense_Mutation p.W1127C 0.26 probably_damaging(0.999) TCGA-C5-A1MK-01 4 154625477 154625477 C G TLR2 Missense_Mutation p.S473C 0.26 deleterious(0.03) possibly_damaging(0.841) TCGA-C5-A1MK-01 4 166231823 166231823 G A KLHL2 Missense_Mutation p.M390I 0.25 deleterious(0) probably_damaging(0.987) TCGA-C5-A1MK-01 4 166254663 166254663 C G MSMO1 Missense_Mutation p.F47L 0.29 deleterious(0.03) benign(0.111) TCGA-C5-A1MK-01 4 186379879 186379879 C G CCDC110 Missense_Mutation p.R621T 0.19 tolerated(0.37) possibly_damaging(0.735) TCGA-C5-A1MK-01 4 3948642 3948642 C T AC226119.5 Intron 0.48 TCGA-C5-A1MK-01 4 66231719 66231719 G A EPHA5 Nonsense_Mutation p.Q661* 0.25 TCGA-C5-A1MK-01 4 69179915 69179915 C G YTHDC1 Missense_Mutation p.D696H 0.23 deleterious_low_confidence(0) unknown(0) TCGA-C5-A1MK-01 4 69179929 69179929 C G YTHDC1 Missense_Mutation p.R691T 0.22 tolerated_low_confidence(0.08) unknown(0) TCGA-C5-A1MK-01 4 69179971 69179971 C G YTHDC1 Missense_Mutation p.R677T 0.29 deleterious_low_confidence(0) unknown(0) TCGA-C5-A1MK-01 4 69188564 69188564 G C YTHDC1 Missense_Mutation p.Q502E 0.27 deleterious(0.04) benign(0.041) TCGA-C5-A1MK-01 4 78783989 78783989 C T MRPL1 5'UTR 0.19 TCGA-C5-A1MK-01 5 118560455 118560455 C G DMXL1 Missense_Mutation p.L2756V 0.15 deleterious(0.03) probably_damaging(0.978) TCGA-C5-A1MK-01 5 140019389 140019389 G C TMCO6 Missense_Mutation p.E51Q 0.43 tolerated(0.07) benign(0.206) TCGA-C5-A1MK-01 5 140176742 140176742 G A PCDHA2 Silent p.A731A 0.23 TCGA-C5-A1MK-01 5 140482562 140482562 C G PCDHB3 Missense_Mutation p.Q777E 0.26 tolerated_low_confidence(0.13) benign(0.017) TCGA-C5-A1MK-01 5 140754203 140754203 G A PCDHGA6 Missense_Mutation p.E185K 0.16 tolerated_low_confidence(0.1) benign(0.004) TCGA-C5-A1MK-01 5 140797792 140797792 G T PCDHGB7 Silent p.V122V 0.16 TCGA-C5-A1MK-01 5 156667073 156667073 G A ITK Missense_Mutation p.E285K 0.17 tolerated(0.25) benign(0.297) TCGA-C5-A1MK-01 5 171544618 171544618 G A STK10 Silent p.L129L 0.16 TCGA-C5-A1MK-01 5 176882210 176882210 G C PRR7 Missense_Mutation p.E48Q 0.29 deleterious(0) unknown(0) TCGA-C5-A1MK-01 5 177309503 177309503 G A RP11-423H2.1 RNA 0.11 TCGA-C5-A1MK-01 5 180431735 180431735 G A BTNL3 Splice_Site p.X279_splice 0.28 TCGA-C5-A1MK-01 5 235338 235338 G C SDHA Missense_Mutation p.G382R 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-C5-A1MK-01 5 37063920 37063920 C T NIPBL Missense_Mutation p.P2630L 0.29 deleterious(0.01) possibly_damaging(0.786) TCGA-C5-A1MK-01 5 43659317 43659317 C T NNT Silent p.V833V 0.29 TCGA-C5-A1MK-01 5 45353336 45353336 C T HCN1 Missense_Mutation p.E415K 0.13 deleterious(0.04) benign(0.009) TCGA-C5-A1MK-01 5 5306693 5306693 G A ADAMTS16 Missense_Mutation p.R1088Q 0.26 tolerated(0.42) benign(0.094) TCGA-C5-A1MK-01 5 70806208 70806208 G A BDP1 Missense_Mutation p.E1097K 0.24 tolerated(0.17) benign(0.086) TCGA-C5-A1MK-01 5 7886790 7886790 C T MTRR Missense_Mutation p.L401F 0.09 deleterious(0.02) possibly_damaging(0.591) TCGA-C5-A1MK-01 5 81573526 81573526 G A RPS23 Silent p.I50I 0.20 TCGA-C5-A1MK-01 5 81573540 81573540 G A RPS23 Missense_Mutation p.H46Y 0.23 tolerated(0.06) benign(0.041) TCGA-C5-A1MK-01 5 89933626 89933626 G A GPR98 Missense_Mutation p.A701T 0.34 benign(0.005) TCGA-C5-A1MK-01 5 90449160 90449160 G A GPR98 Silent p.L6249L 0.19 TCGA-C5-A1MK-01 6 112422053 112422053 G A FAM229B 3'UTR 0.20 TCGA-C5-A1MK-01 6 143093707 143093707 G A HIVEP2 Silent p.I723I 0.28 TCGA-C5-A1MK-01 6 149700292 149700292 G C TAB2 Missense_Mutation p.G414A 0.19 tolerated(0.51) benign(0.006) TCGA-C5-A1MK-01 6 153077323 153077323 C T VIP Silent p.F130F 0.27 TCGA-C5-A1MK-01 6 154727587 154727587 C T CNKSR3 Silent p.G523G 0.28 TCGA-C5-A1MK-01 6 159682278 159682278 C T FNDC1 Missense_Mutation p.S1744L 0.19 deleterious(0) probably_damaging(0.914) TCGA-C5-A1MK-01 6 160169501 160169501 G A WTAP Intron 0.33 TCGA-C5-A1MK-01 6 31997361 31997361 C T C4B Missense_Mutation p.S1232L 0.28 tolerated(0.12) benign(0.022) TCGA-C5-A1MK-01 6 32154456 32154456 G A PBX2 Silent p.L375L 0.19 TCGA-C5-A1MK-01 6 33237985 33237985 C G VPS52 Missense_Mutation p.E56Q 0.26 tolerated(0.16) benign(0.275) TCGA-C5-A1MK-01 6 46107443 46107443 G A ENPP4 Silent p.L41L 0.32 TCGA-C5-A1MK-01 6 76022448 76022448 G A FILIP1 Missense_Mutation p.R1034W 0.23 deleterious(0) probably_damaging(0.996) TCGA-C5-A1MK-01 7 100284988 100284988 C T GIGYF1 Missense_Mutation p.E139K 0.24 deleterious(0.01) unknown(0) TCGA-C5-A1MK-01 7 106793673 106793673 G C PRKAR2B Missense_Mutation p.D299H 0.09 deleterious(0) probably_damaging(0.969) TCGA-C5-A1MK-01 7 136849075 136849075 G C hsa-mir-490 Intron 0.10 TCGA-C5-A1MK-01 7 142510352 142510352 C G TRBV30 Missense_Mutation p.R85T 0.26 deleterious(0) probably_damaging(0.995) TCGA-C5-A1MK-01 7 155090262 155090262 C G INSIG1 Silent p.L89L 0.19 TCGA-C5-A1MK-01 7 157160168 157160168 G C DNAJB6 Missense_Mutation p.D113H 0.15 tolerated(0.37) benign(0.014) TCGA-C5-A1MK-01 7 35129929 35129929 C T DPY19L2P1 RNA 0.15 TCGA-C5-A1MK-01 7 40220584 40220584 C G SUGCT Missense_Mutation p.L54V 0.13 tolerated(0.12) probably_damaging(0.919) TCGA-C5-A1MK-01 7 5567318 5567335 GTTTTCTGCGCAAGTTAG - ACTB 3'UTR 0.23 TCGA-C5-A1MK-01 7 6054882 6054882 C G AIMP2 Missense_Mutation p.Q81E 0.25 tolerated(0.13) benign(0.096) TCGA-C5-A1MK-01 7 99032477 99032477 C T ATP5J2-PTCD1 Missense_Mutation p.R179Q 0.26 tolerated(0.23) benign(0.008) TCGA-C5-A1MK-01 8 103299757 103299757 C T UBR5 Missense_Mutation p.E1621K 0.21 deleterious(0) probably_damaging(0.952) TCGA-C5-A1MK-01 8 124383164 124383164 C T ATAD2 Missense_Mutation p.D236N 0.15 tolerated(0.11) possibly_damaging(0.889) TCGA-C5-A1MK-01 8 131414208 131414208 G C ASAP1 5'UTR 0.22 TCGA-C5-A1MK-01 8 133492621 133492621 G A KCNQ3 Silent p.V53V 0.27 TCGA-C5-A1MK-01 8 145753332 145753332 C T C8orf82 Intron 0.28 TCGA-C5-A1MK-01 8 17944402 17944402 G A ASAH1 5'Flank 0.33 TCGA-C5-A1MK-01 8 38205669 38205669 G C WHSC1L1 Missense_Mutation p.F7L 0.21 tolerated_low_confidence(0.12) probably_damaging(0.989) TCGA-C5-A1MK-01 8 41469775 41469775 G A AGPAT6 Missense_Mutation p.D260N 0.23 deleterious(0.03) benign(0.061) TCGA-C5-A1MK-01 8 61765139 61765139 G C CHD7 Missense_Mutation p.D1993H 0.16 probably_damaging(0.91) TCGA-C5-A1MK-01 8 67089290 67089290 G C CRH Silent p.L141L 0.30 TCGA-C5-A1MK-01 9 101546366 101546366 C T ANKS6 Silent p.A327A 0.30 TCGA-C5-A1MK-01 9 1053808 1053808 C G DMRT2 Silent p.A204A 0.24 TCGA-C5-A1MK-01 9 106875709 106875709 G A SMC2 Missense_Mutation p.R456K 0.23 tolerated(1) benign(0.001) TCGA-C5-A1MK-01 9 107379601 107379601 G C OR13C9 Missense_Mutation p.I295M 0.20 deleterious(0) probably_damaging(0.997) TCGA-C5-A1MK-01 9 123917084 123917084 G C CNTRL Missense_Mutation p.E1420Q 0.46 probably_damaging(0.999) TCGA-C5-A1MK-01 9 127828300 127828300 G A SCAI Nonsense_Mutation p.Q46* 0.19 TCGA-C5-A1MK-01 9 131476870 131476870 G A PKN3 Missense_Mutation p.G504D 0.10 tolerated(0.37) benign(0.282) TCGA-C5-A1MK-01 9 140970329 140970329 G A CACNA1B Missense_Mutation p.R1639Q 0.64 tolerated(0.18) benign(0.362) TCGA-C5-A1MK-01 9 34637231 34637231 G C SIGMAR1 Missense_Mutation p.S113C 0.44 deleterious(0) probably_damaging(0.95) TCGA-C5-A1MK-01 9 35906559 35906559 A C HRCT1 Missense_Mutation p.H92P 0.53 tolerated_low_confidence(0.3) unknown(0) TCGA-C5-A1MK-01 9 39176011 39176011 G A CNTNAP3 Missense_Mutation p.L336F 0.18 deleterious(0) probably_damaging(0.914) TCGA-C5-A1MK-01 9 418177 418177 G A DOCK8 Silent p.L1270L 0.22 TCGA-C5-A1MK-01 9 6013755 6013755 C G RANBP6 Missense_Mutation p.R618T 0.26 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MK-01 X 106840647 106840647 C G FRMPD3 Missense_Mutation p.S546W 0.17 deleterious(0) possibly_damaging(0.774) TCGA-C5-A1MK-01 X 142795362 142795362 C T SPANXN2 Missense_Mutation p.E106K 0.06 deleterious(0.03) unknown(0) TCGA-C5-A1MK-01 X 19713767 19713767 C T SH3KBP1 Silent p.E161E 0.20 TCGA-C5-A1MK-01 X 30577710 30577710 G A CXorf21 Nonsense_Mutation p.Q255* 0.15 TCGA-C5-A1MK-01 X 34149541 34149541 C T FAM47A Silent p.K285K 0.22 TCGA-C5-A1MK-01 X 41555097 41555097 G A GPR34 Missense_Mutation p.G71R 0.04 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MK-01 X 46541920 46541920 G A SLC9A7 Missense_Mutation p.R126C 0.24 tolerated(0.08) benign(0.009) TCGA-C5-A1MK-01 X 49019254 49019254 G A MAGIX Silent p.A9A 0.28 TCGA-C5-A1MK-01 X 50659449 50659449 C G BMP15 Missense_Mutation p.Q341E 0.16 deleterious(0) probably_damaging(1) TCGA-C5-A1MK-01 X 53228335 53228335 G A KDM5C Silent p.I689I 0.16 TCGA-C5-A1MK-01 X 53579331 53579331 C T HUWE1 Missense_Mutation p.R2941Q 0.21 benign(0.238) TCGA-C5-A1MK-01 X 54776263 54776263 C T ITIH6 3'UTR 0.25 TCGA-C5-A1MK-01 X 63488741 63488741 C T MTMR8 Silent p.Q597Q 0.28 TCGA-C5-A1MK-01 X 63564952 63564952 G A MTMR8 Missense_Mutation p.R280W 0.24 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MK-01 X 69699014 69699014 G C DLG3 Missense_Mutation p.E474Q 0.32 deleterious(0.02) possibly_damaging(0.644) TCGA-C5-A1ML-01 10 112349666 112349666 G A SMC3 Missense_Mutation p.E476K 0.64 deleterious(0) possibly_damaging(0.823) TCGA-C5-A1ML-01 10 90984904 90984904 G A LIPA Missense_Mutation p.A207V 0.77 deleterious(0.01) benign(0.063) TCGA-C5-A1ML-01 11 55904865 55904865 C T OR8J3 Silent p.S110S 0.20 TCGA-C5-A1ML-01 11 58919992 58919992 C A FAM111A Nonsense_Mutation p.S284* 0.47 TCGA-C5-A1ML-01 11 66411229 66411229 G A RBM14-RBM4 Missense_Mutation p.V216M 0.33 tolerated(0.22) unknown(0) TCGA-C5-A1ML-01 11 68131409 68131409 T A LRP5 Missense_Mutation p.F294Y 0.50 tolerated(1) benign(0) TCGA-C5-A1ML-01 12 108685762 108685762 G C CMKLR1 Missense_Mutation p.F326L 0.49 tolerated(0.37) benign(0.019) TCGA-C5-A1ML-01 12 113442868 113442868 G A OAS2 Missense_Mutation p.E437K 0.35 tolerated(1) benign(0.006) TCGA-C5-A1ML-01 12 113442910 113442910 G C OAS2 Missense_Mutation p.E451Q 0.28 deleterious(0.04) probably_damaging(0.93) TCGA-C5-A1ML-01 12 49425644 49425644 G A KMT2D Nonsense_Mutation p.R4282* 0.53 TCGA-C5-A1ML-01 12 49434415 49434415 G A KMT2D Nonsense_Mutation p.Q2380* 0.38 TCGA-C5-A1ML-01 12 49729936 49729936 G A C1QL4 Missense_Mutation p.R109C 0.44 deleterious(0) possibly_damaging(0.836) TCGA-C5-A1ML-01 12 8088661 8088661 G C SLC2A3 5'UTR 0.34 TCGA-C5-A1ML-01 12 90036009 90036009 A C ATP2B1 Nonsense_Mutation p.L111* 0.04 TCGA-C5-A1ML-01 13 25889520 25889520 G C NUPL1 Missense_Mutation p.L200F 0.44 deleterious(0.04) probably_damaging(0.994) TCGA-C5-A1ML-01 14 102793113 102793113 G A ZNF839 Silent p.T360T 0.43 TCGA-C5-A1ML-01 14 20482425 20482425 G A OR4K14 Nonsense_Mutation p.Q310* 0.49 TCGA-C5-A1ML-01 14 23394235 23394235 G A PRMT5 Silent p.F264F 0.07 TCGA-C5-A1ML-01 14 39764153 39764153 C G CTAGE5 Missense_Mutation p.Q203E 0.46 tolerated(0.22) benign(0.012) TCGA-C5-A1ML-01 14 59113479 59113479 A G DACT1 Missense_Mutation p.Y713C 0.46 deleterious(0.01) possibly_damaging(0.849) TCGA-C5-A1ML-01 14 94741747 94741747 C T PPP4R4 Missense_Mutation p.P829L 0.05 tolerated_low_confidence(0.2) benign(0.021) TCGA-C5-A1ML-01 15 24923096 24923096 C A NPAP1 Silent p.P694P 0.76 TCGA-C5-A1ML-01 15 89450573 89450573 G A MFGE8 Silent p.N80N 0.40 TCGA-C5-A1ML-01 16 22334233 22334233 G T POLR3E Missense_Mutation p.C350F 0.47 deleterious(0) probably_damaging(0.958) TCGA-C5-A1ML-01 17 16342647 16342647 A G TRPV2 3'Flank 0.42 TCGA-C5-A1ML-01 17 17719223 17719223 G A SREBF1 Silent p.S808S 0.39 TCGA-C5-A1ML-01 17 19288463 19288463 C T MFAP4 Missense_Mutation p.E181K 0.55 deleterious(0) probably_damaging(0.996) TCGA-C5-A1ML-01 17 2139835 2139835 C G SMG6 Silent p.L940L 0.47 TCGA-C5-A1ML-01 17 74288517 74288517 G T QRICH2 Missense_Mutation p.P598H 0.44 deleterious(0) probably_damaging(0.98) TCGA-C5-A1ML-01 17 80402346 80402346 C G C17orf62 Missense_Mutation p.Q140H 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A1ML-01 18 63526275 63526275 C T CDH7 Missense_Mutation p.P496L 0.24 deleterious(0.04) benign(0.212) TCGA-C5-A1ML-01 18 67781755 67781755 G A RTTN Silent p.V1203V 0.28 TCGA-C5-A1ML-01 18 74817242 74817242 G A MBP Intron 0.08 TCGA-C5-A1ML-01 19 12429781 12429781 C T ZNF563 Missense_Mutation p.R353Q 0.24 tolerated(0.83) benign(0.024) TCGA-C5-A1ML-01 19 12542024 12542024 G A ZNF443 Missense_Mutation p.S321F 0.27 tolerated(0.7) benign(0.005) TCGA-C5-A1ML-01 19 19221580 19221580 C G SLC25A42 Silent p.L284L 0.75 TCGA-C5-A1ML-01 19 39051944 39051944 C T RYR1 Silent p.R4158R 0.38 TCGA-C5-A1ML-01 19 46915956 46915956 G A CCDC8 Missense_Mutation p.R38W 0.25 probably_damaging(0.998) TCGA-C5-A1ML-01 19 55669030 55669030 G A TNNI3 5'UTR 0.27 TCGA-C5-A1ML-01 19 9065853 9065853 G C MUC16 Missense_Mutation p.S7198C 0.59 unknown(0) TCGA-C5-A1ML-01 19 9067041 9067041 G A MUC16 Missense_Mutation p.S6802F 0.58 unknown(0) TCGA-C5-A1ML-01 19 9068288 9068288 G C MUC16 Silent p.V6386V 0.62 TCGA-C5-A1ML-01 1 11575526 11575526 G C PTCHD2 Silent p.L518L 0.32 TCGA-C5-A1ML-01 1 12941851 12941851 C T PRAMEF4 Missense_Mutation p.M233I 0.17 deleterious(0.02) probably_damaging(0.981) TCGA-C5-A1ML-01 1 151149168 151149168 G T VPS72 Silent p.L360L 0.39 TCGA-C5-A1ML-01 1 155753850 155753850 C A GON4L Nonsense_Mutation p.E607* 0.33 TCGA-C5-A1ML-01 1 155755146 155755146 C T GON4L Silent p.L589L 0.32 TCGA-C5-A1ML-01 1 155874261 155874261 C T RIT1 Missense_Mutation p.M107I 0.27 tolerated(0.07) probably_damaging(0.956) TCGA-C5-A1ML-01 1 223116341 223116341 A G DISP1 Missense_Mutation p.N59S 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.687) TCGA-C5-A1ML-01 1 40717196 40717196 C G TMCO2 Missense_Mutation p.S160C 0.25 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-C5-A1ML-01 1 44687112 44687112 G A ERI3 3'UTR 0.23 TCGA-C5-A1ML-01 1 67359062 67359062 C T WDR78 Missense_Mutation p.R127Q 0.29 tolerated(0.46) benign(0.004) TCGA-C5-A1ML-01 20 25203510 25203510 C T ENTPD6 Missense_Mutation p.S361L 0.41 tolerated(0.35) benign(0.02) TCGA-C5-A1ML-01 20 31996362 31996362 A T SNTA1 Missense_Mutation p.I490N 0.38 deleterious(0) probably_damaging(0.962) TCGA-C5-A1ML-01 20 43929600 43929600 C G MATN4 Silent p.V313V 0.11 TCGA-C5-A1ML-01 21 34727805 34727805 G A IFNAR1 Missense_Mutation p.D542N 0.38 deleterious(0.01) probably_damaging(0.917) TCGA-C5-A1ML-01 22 38051917 38051917 C G SH3BP1 3'UTR 0.40 TCGA-C5-A1ML-01 2 177017631 177017631 G A HOXD4 Silent p.P243P 0.45 TCGA-C5-A1ML-01 2 182400330 182400331 - A ITGA4 3'UTR 0.28 TCGA-C5-A1ML-01 2 242265494 242265495 - A SEPT2 Frame_Shift_Ins p.G35Rfs*3 0.34 TCGA-C5-A1ML-01 2 27465560 27465560 G A CAD Missense_Mutation p.V2099I 0.46 tolerated(0.11) benign(0.093) TCGA-C5-A1ML-01 3 122003151 122003151 G T CASR Missense_Mutation p.A794S 0.53 tolerated(0.28) probably_damaging(1) TCGA-C5-A1ML-01 3 145913067 145913067 G C PLSCR4 Silent p.V263V 0.33 TCGA-C5-A1ML-01 3 167051706 167051706 T C ZBBX Missense_Mutation p.D199G 0.03 deleterious(0.05) benign(0.033) TCGA-C5-A1ML-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-C5-A1ML-01 3 186364037 186364037 T A FETUB Missense_Mutation p.W199R 0.04 deleterious(0.04) probably_damaging(0.993) TCGA-C5-A1ML-01 3 190999976 190999976 C T UTS2B Translation_Start_Site p.M1? 0.21 deleterious(0.04) probably_damaging(0.954) TCGA-C5-A1ML-01 3 69336920 69336920 T C FRMD4B Missense_Mutation p.K162E 0.89 deleterious(0) probably_damaging(0.998) TCGA-C5-A1ML-01 4 128554177 128554177 T G INTU 5'UTR 0.22 TCGA-C5-A1ML-01 4 141446613 141446613 G T ELMOD2 Missense_Mutation p.G11W 0.14 tolerated(0.2) possibly_damaging(0.685) TCGA-C5-A1ML-01 4 141446614 141446614 G T ELMOD2 Missense_Mutation p.G11V 0.14 tolerated(0.49) benign(0.051) TCGA-C5-A1ML-01 4 175414436 175414436 C T HPGD Silent p.V176V 0.23 TCGA-C5-A1ML-01 4 189020129 189020129 T C TRIML2 Intron 0.62 TCGA-C5-A1ML-01 5 118844859 118844859 C T HSD17B4 Missense_Mutation p.L478F 0.15 tolerated(0.17) benign(0.13) TCGA-C5-A1ML-01 5 140308267 140308267 C T PCDHAC1 Missense_Mutation p.S597F 0.30 tolerated(0.26) benign(0.414) TCGA-C5-A1ML-01 5 160071195 160071195 C A ATP10B Missense_Mutation p.G273V 0.67 deleterious(0) probably_damaging(1) TCGA-C5-A1ML-01 5 180056292 180056292 G A FLT4 Nonsense_Mutation p.R318* 0.28 TCGA-C5-A1ML-01 5 72469967 72469967 A G TMEM174 Missense_Mutation p.E236G 0.24 deleterious(0) probably_damaging(0.997) TCGA-C5-A1ML-01 6 152716799 152716799 C T SYNE1 Missense_Mutation p.D2522N 0.69 benign(0.334) TCGA-C5-A1ML-01 6 16295255 16295255 T G GMPR Silent p.T292T 0.66 TCGA-C5-A1ML-01 6 33371529 33371529 G T KIFC1 Nonsense_Mutation p.G127* 0.36 TCGA-C5-A1ML-01 6 33371530 33371530 G A KIFC1 Missense_Mutation p.G127E 0.36 tolerated(0.09) benign(0.258) TCGA-C5-A1ML-01 6 38560593 38560593 T C BTBD9 Silent p.L191L 0.38 TCGA-C5-A1ML-01 6 43193806 43193806 C T DNPH1 Missense_Mutation p.R114Q 0.57 tolerated(0.31) benign(0.015) TCGA-C5-A1ML-01 7 142575713 142575713 G C TRPV6 Silent p.L65L 0.35 TCGA-C5-A1ML-01 7 36910022 36910022 C G ELMO1 Missense_Mutation p.E627D 0.44 tolerated(0.34) benign(0.392) TCGA-C5-A1ML-01 7 87133510 87133510 A T ABCB1 3'UTR 0.41 TCGA-C5-A1ML-01 7 99445165 99445165 G A CYP3A43 Missense_Mutation p.E125K 0.41 tolerated(0.34) benign(0.012) TCGA-C5-A1ML-01 8 116617063 116617063 G A TRPS1 Missense_Mutation p.S378F 0.28 deleterious_low_confidence(0.01) benign(0.311) TCGA-C5-A1ML-01 8 25198414 25198414 T A DOCK5 Missense_Mutation p.D783E 0.45 tolerated(0.91) benign(0.001) TCGA-C5-A1ML-01 9 140126613 140126613 G A SLC34A3 Missense_Mutation p.E59K 0.11 deleterious(0.02) benign(0.19) TCGA-C5-A1ML-01 9 77442675 77442675 G A TRPM6 Intron 0.47 TCGA-C5-A1ML-01 9 94495419 94495419 C T ROR2 Missense_Mutation p.E308K 0.71 tolerated(0.26) benign(0.02) TCGA-C5-A1ML-01 X 122387320 122387320 G A GRIA3 Silent p.L145L 0.47 TCGA-C5-A1ML-01 X 37587667 37587667 T A XK Missense_Mutation p.S429R 0.42 tolerated_low_confidence(0.22) benign(0.08) TCGA-C5-A1ML-01 X 69353869 69353869 C T IGBP1 Silent p.D24D 0.32 TCGA-C5-A1ML-01 X 73069529 73069529 G A XIST RNA 0.44 TCGA-C5-A1ML-01 X 77529174 77529174 G C CYSLTR1 Missense_Mutation p.Q24E 0.38 tolerated(0.74) benign(0.101) TCGA-C5-A1ML-01 X 99854613 99854613 G A TNMD Missense_Mutation p.G285S 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-C5-A1MN-01 10 117607476 117607476 C T ATRNL1 Missense_Mutation p.S1331L 0.40 tolerated(0.11) benign(0.074) TCGA-C5-A1MN-01 10 135369482 135369482 C G SYCE1 Intron 0.18 TCGA-C5-A1MN-01 10 72637064 72637064 A G SGPL1 Missense_Mutation p.Q560R 0.31 tolerated(0.16) benign(0.142) TCGA-C5-A1MN-01 10 97919065 97919065 G A ZNF518A RNA 0.36 TCGA-C5-A1MN-01 11 1018394 1018394 C G MUC6 Missense_Mutation p.Q1469H 0.26 unknown(0) TCGA-C5-A1MN-01 11 102589172 102589172 C T MMP8 Missense_Mutation p.D253N 0.32 deleterious(0) probably_damaging(1) TCGA-C5-A1MN-01 11 105923634 105923634 G A KBTBD3 Silent p.C594C 0.33 TCGA-C5-A1MN-01 11 124955860 124955860 G A SLC37A2 Missense_Mutation p.R479Q 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-C5-A1MN-01 11 126073280 126073280 G A RPUSD4 3'UTR 0.46 TCGA-C5-A1MN-01 11 18956110 18956110 G A MRGPRX1 Silent p.L74L 0.18 TCGA-C5-A1MN-01 11 58477548 58477548 C T GLYAT Silent p.Q194Q 0.38 TCGA-C5-A1MN-01 11 61084025 61084025 G A DDB1 Missense_Mutation p.R414W 0.42 deleterious(0) probably_damaging(0.948) TCGA-C5-A1MN-01 11 62397703 62397703 C T GANAB Nonsense_Mutation p.W542* 0.36 TCGA-C5-A1MN-01 11 66975079 66975079 G A KDM2A Missense_Mutation p.E136K 0.35 deleterious(0) benign(0.063) TCGA-C5-A1MN-01 11 78381424 78381424 A G TENM4 Missense_Mutation p.I1989T 0.16 tolerated(0.17) benign(0.009) TCGA-C5-A1MN-01 11 9494253 9494253 G A ZNF143 Missense_Mutation p.V48I 0.41 tolerated(0.1) benign(0.054) TCGA-C5-A1MN-01 12 20709614 20709614 G T PDE3A Missense_Mutation p.W327C 0.32 deleterious(0) probably_damaging(0.976) TCGA-C5-A1MN-01 12 31540647 31540647 C T DENND5B Missense_Mutation p.A1239T 0.71 deleterious(0) probably_damaging(0.97) TCGA-C5-A1MN-01 12 49438040 49438040 T A KMT2D Nonsense_Mutation p.K1711* 0.30 TCGA-C5-A1MN-01 12 7085038 7085038 G A EMG1 3'UTR 0.65 TCGA-C5-A1MN-01 12 98995213 98995213 C G SLC25A3 Missense_Mutation p.I332M 0.35 deleterious(0) probably_damaging(0.997) TCGA-C5-A1MN-01 12 98995275 98995275 C G SLC25A3 Missense_Mutation p.S353C 0.24 deleterious(0) probably_damaging(0.995) TCGA-C5-A1MN-01 13 46638848 46638848 A C CPB2 Missense_Mutation p.F244C 0.38 tolerated(0.19) possibly_damaging(0.479) TCGA-C5-A1MN-01 13 77862415 77862415 G C MYCBP2 Missense_Mutation p.L121V 0.38 probably_damaging(0.952) TCGA-C5-A1MN-01 14 103806896 103806896 G A EIF5 Missense_Mutation p.E402K 0.38 deleterious(0.02) probably_damaging(0.947) TCGA-C5-A1MN-01 14 21560966 21560966 G A ZNF219 Missense_Mutation p.R164C 0.39 deleterious(0) possibly_damaging(0.664) TCGA-C5-A1MN-01 14 24711514 24711514 G A TINF2 Missense_Mutation p.P9S 0.39 deleterious(0.04) possibly_damaging(0.803) TCGA-C5-A1MN-01 14 25326285 25326285 G A STXBP6 Missense_Mutation p.S78L 0.36 deleterious(0.03) benign(0.023) TCGA-C5-A1MN-01 14 71495433 71495433 T C PCNX Silent p.L1161L 0.42 TCGA-C5-A1MN-01 14 75266402 75266402 T C YLPM1 Splice_Site p.X1467_splice 0.34 TCGA-C5-A1MN-01 15 102244135 102244135 C T TARSL2 Missense_Mutation p.G334D 0.32 deleterious(0) probably_damaging(0.986) TCGA-C5-A1MN-01 15 44092974 44092974 C T HYPK Silent p.L60L 0.29 TCGA-C5-A1MN-01 15 45007719 45007719 G T B2M Nonsense_Mutation p.E56* 0.33 TCGA-C5-A1MN-01 15 48936854 48936854 C T FBN1 Missense_Mutation p.R38K 0.32 benign(0.037) TCGA-C5-A1MN-01 15 56748599 56748599 C G MNS1 Missense_Mutation p.E116Q 0.28 tolerated(0.1) benign(0.301) TCGA-C5-A1MN-01 15 57754079 57754079 G A CGNL1 Missense_Mutation p.E798K 0.44 tolerated(0.23) benign(0.033) TCGA-C5-A1MN-01 15 59080149 59080149 G A FAM63B Silent p.L295L 0.27 TCGA-C5-A1MN-01 16 27459826 27459826 C T IL21R Intron 0.39 TCGA-C5-A1MN-01 16 27761023 27761023 C G KIAA0556 Missense_Mutation p.I914M 0.32 deleterious(0) probably_damaging(1) TCGA-C5-A1MN-01 16 31091077 31091077 G A ZNF646 Silent p.P1144P 0.33 TCGA-C5-A1MN-01 16 602965 602965 G A CAPN15 Missense_Mutation p.D1003N 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-C5-A1MN-01 16 66998385 66998385 C G CES3 Missense_Mutation p.S229C 0.35 deleterious(0) probably_damaging(1) TCGA-C5-A1MN-01 16 67233630 67233630 G A ELMO3 Missense_Mutation p.D108N 0.19 deleterious(0.05) possibly_damaging(0.594) TCGA-C5-A1MN-01 16 67974269 67974269 G A LCAT Silent p.H287H 0.42 TCGA-C5-A1MN-01 16 68266312 68266312 G A ESRP2 Nonsense_Mutation p.Q306* 0.38 TCGA-C5-A1MN-01 16 68266313 68266313 C A ESRP2 Silent p.L305L 0.38 TCGA-C5-A1MN-01 16 721776 721776 G A RHOT2 Missense_Mutation p.D317N 0.28 deleterious(0) probably_damaging(0.964) TCGA-C5-A1MN-01 16 81077781 81077781 G C ATMIN Missense_Mutation p.E560Q 0.27 deleterious(0.04) possibly_damaging(0.514) TCGA-C5-A1MN-01 17 1554406 1554406 G A PRPF8 Silent p.F2283F 0.54 TCGA-C5-A1MN-01 17 37649098 37649098 G A CDK12 Missense_Mutation p.E735K 0.20 probably_damaging(0.998) TCGA-C5-A1MN-01 17 38950265 38950265 C T KRT28 Missense_Mutation p.E338K 0.32 tolerated(0.09) possibly_damaging(0.775) TCGA-C5-A1MN-01 17 39537389 39537389 C G KRT34 Silent p.L211L 0.37 TCGA-C5-A1MN-01 17 39596478 39596478 G A KRT38 Silent p.A170A 0.42 TCGA-C5-A1MN-01 17 42850447 42850447 C T ADAM11 Silent p.A273A 0.32 TCGA-C5-A1MN-01 17 43044840 43044840 C T C1QL1 Missense_Mutation p.D193N 0.48 deleterious(0.01) possibly_damaging(0.901) TCGA-C5-A1MN-01 17 53077096 53077096 G T STXBP4 Nonsense_Mutation p.G131* 0.46 TCGA-C5-A1MN-01 17 61611355 61611355 C T KCNH6 Missense_Mutation p.L262F 0.36 deleterious(0.03) benign(0.119) TCGA-C5-A1MN-01 17 62080942 62080942 C G C17orf72 3'Flank 0.36 TCGA-C5-A1MN-01 17 62081145 62081145 C A ICAM2 Nonsense_Mutation p.E170* 0.30 TCGA-C5-A1MN-01 17 78318498 78318498 C T RNF213 Silent p.F2121F 0.43 TCGA-C5-A1MN-01 17 78318661 78318661 C G RNF213 Missense_Mutation p.Q2176E 0.41 benign(0.015) TCGA-C5-A1MN-01 17 79428055 79428055 C G RP11-1055B8.7 Silent p.L2122L 0.28 TCGA-C5-A1MN-01 18 31432886 31432886 C A NOL4 Missense_Mutation p.V613F 0.23 deleterious(0) probably_damaging(0.997) TCGA-C5-A1MN-01 18 32443934 32443934 C T DTNA Missense_Mutation p.R464C 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A1MN-01 18 33779772 33779772 G C MOCOS Silent p.G142G 0.34 TCGA-C5-A1MN-01 18 3729211 3729211 G A DLGAP1 Silent p.D505D 0.47 TCGA-C5-A1MN-01 19 13246773 13246773 G A NACC1 Missense_Mutation p.G251D 0.38 deleterious(0) benign(0.08) TCGA-C5-A1MN-01 19 15562617 15562617 C T RASAL3 Missense_Mutation p.D1009N 0.44 tolerated_low_confidence(0.12) benign(0.039) TCGA-C5-A1MN-01 19 19010503 19010503 G A COPE Silent p.Y304Y 0.30 TCGA-C5-A1MN-01 19 21910654 21910654 C T ZNF100 Missense_Mutation p.E154K 0.35 tolerated(0.06) benign(0.288) TCGA-C5-A1MN-01 19 35793405 35793405 C T MAG Missense_Mutation p.T342M 0.36 deleterious(0.04) possibly_damaging(0.867) TCGA-C5-A1MN-01 19 42796810 42796810 C A CIC Missense_Mutation p.P1090T 0.30 probably_damaging(0.981) TCGA-C5-A1MN-01 19 44503364 44503364 G C ZNF155 3'Flank 0.22 TCGA-C5-A1MN-01 19 50475333 50475333 C T VRK3 3'Flank 0.45 TCGA-C5-A1MN-01 19 8376340 8376340 G A NDUFA7 3'UTR 0.53 TCGA-C5-A1MN-01 1 109813168 109813168 G A CELSR2 Missense_Mutation p.G2477S 0.45 deleterious(0.03) possibly_damaging(0.864) TCGA-C5-A1MN-01 1 110086927 110086927 A G GPR61 Missense_Mutation p.Q428R 0.46 tolerated(0.1) benign(0.002) TCGA-C5-A1MN-01 1 118477108 118477108 C T WDR3 Nonsense_Mutation p.Q62* 0.43 TCGA-C5-A1MN-01 1 12939661 12939661 C G PRAMEF4 Missense_Mutation p.E381Q 0.23 tolerated(1) benign(0.136) TCGA-C5-A1MN-01 1 152732421 152732421 C T KPRP Silent p.Y119Y 0.43 TCGA-C5-A1MN-01 1 152884058 152884058 G C IVL 3'UTR 0.30 TCGA-C5-A1MN-01 1 153660530 153660530 G A NPR1 Silent p.E750E 0.29 TCGA-C5-A1MN-01 1 167973911 167973911 C G DCAF6 Missense_Mutation p.Q420E 0.27 tolerated_low_confidence(0.13) benign(0.015) TCGA-C5-A1MN-01 1 177226388 177226388 A T BRINP2 Silent p.I179I 0.47 TCGA-C5-A1MN-01 1 22202370 22202370 C A HSPG2 Missense_Mutation p.V1057L 0.18 possibly_damaging(0.71) TCGA-C5-A1MN-01 1 226789754 226789754 C T C1orf95 3'UTR 0.27 TCGA-C5-A1MN-01 1 229568027 229568027 G A ACTA1 Silent p.F202F 0.23 TCGA-C5-A1MN-01 1 23208941 23208941 G T EPHB2 Missense_Mutation p.V465L 0.36 tolerated(0.27) benign(0.307) TCGA-C5-A1MN-01 1 235383751 235383751 C G ARID4B Missense_Mutation p.E425Q 0.33 tolerated(0.06) possibly_damaging(0.587) TCGA-C5-A1MN-01 1 236716983 236716983 C G HEATR1 Silent p.L2045L 0.33 TCGA-C5-A1MN-01 1 237777446 237777446 C T RYR2 Missense_Mutation p.A1673V 0.47 probably_damaging(0.917) TCGA-C5-A1MN-01 1 42621286 42621286 G A GUCA2B 3'UTR 0.28 TCGA-C5-A1MN-01 1 43663242 43663242 G A WDR65 Missense_Mutation p.E381K 0.37 tolerated(0.09) benign(0.43) TCGA-C5-A1MN-01 1 45268429 45268429 C T PLK3 Intron 0.39 TCGA-C5-A1MN-01 1 62916624 62916624 C T USP1 Missense_Mutation p.P777L 0.17 deleterious(0) probably_damaging(1) TCGA-C5-A1MN-01 1 94972174 94972174 C A ABCD3 Silent p.G607G 0.27 TCGA-C5-A1MN-01 20 1532442 1532442 C T SIRPD Missense_Mutation p.E106K 0.30 deleterious(0.01) possibly_damaging(0.815) TCGA-C5-A1MN-01 20 30898811 30898811 G T KIF3B Missense_Mutation p.D411Y 0.36 deleterious(0.01) benign(0.137) TCGA-C5-A1MN-01 20 31571671 31571671 C T SUN5 Missense_Mutation p.V357M 0.58 deleterious(0.01) probably_damaging(1) TCGA-C5-A1MN-01 20 3782998 3782998 G A CDC25B Missense_Mutation p.R390Q 0.29 deleterious(0.04) possibly_damaging(0.733) TCGA-C5-A1MN-01 21 22710717 22710717 C G NCAM2 Missense_Mutation p.H303D 0.27 deleterious(0.01) possibly_damaging(0.541) TCGA-C5-A1MN-01 21 28217230 28217230 C G ADAMTS1 Missense_Mutation p.G15A 0.54 tolerated_low_confidence(0.98) benign(0.017) TCGA-C5-A1MN-01 21 28217233 28217233 A T ADAMTS1 Missense_Mutation p.L14Q 0.50 tolerated_low_confidence(0.16) benign(0.205) TCGA-C5-A1MN-01 21 34860889 34860889 C T DNAJC28 Missense_Mutation p.R271K 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-C5-A1MN-01 22 18640453 18640453 T C USP18 Missense_Mutation p.L8P 0.03 deleterious_low_confidence(0.04) benign(0.002) TCGA-C5-A1MN-01 22 22735436 22735436 C T IGLV1-44 Nonsense_Mutation p.Q25* 0.30 TCGA-C5-A1MN-01 22 30890922 30890922 C G SEC14L4 Silent p.L150L 0.25 TCGA-C5-A1MN-01 22 32791044 32791044 G A RTCB Missense_Mutation p.P383L 0.35 deleterious(0) probably_damaging(0.994) TCGA-C5-A1MN-01 22 43464472 43464472 G C TTLL1 Missense_Mutation p.F149L 0.29 deleterious(0) possibly_damaging(0.861) TCGA-C5-A1MN-01 22 43464588 43464588 G C TTLL1 Missense_Mutation p.P111A 0.28 deleterious(0) probably_damaging(0.981) TCGA-C5-A1MN-01 2 112588897 112588897 G A ANAPC1 Missense_Mutation p.P864L 0.35 tolerated(0.07) possibly_damaging(0.543) TCGA-C5-A1MN-01 2 113788646 113788646 G C IL36B Missense_Mutation p.L34V 0.32 tolerated_low_confidence(0.7) benign(0.009) TCGA-C5-A1MN-01 2 118703126 118703126 C G CCDC93 Missense_Mutation p.L443F 0.28 tolerated(0.09) benign(0.001) TCGA-C5-A1MN-01 2 130900839 130900839 C T CCDC74B Intron 0.51 TCGA-C5-A1MN-01 2 174774691 174774691 G A SP3 Missense_Mutation p.S775F 0.34 deleterious(0.01) possibly_damaging(0.548) TCGA-C5-A1MN-01 2 175094076 175094076 C T OLA1 Missense_Mutation p.E69K 0.43 tolerated(0.11) benign(0.081) TCGA-C5-A1MN-01 2 177016484 177016484 G A HOXD4 Silent p.A41A 0.30 TCGA-C5-A1MN-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.31 deleterious(0) probably_damaging(1) TCGA-C5-A1MN-01 2 179393094 179393094 G A TTN Nonsense_Mutation p.R35762* 0.40 TCGA-C5-A1MN-01 2 179499165 179499165 G T TTN Missense_Mutation p.Q14115K 0.13 TCGA-C5-A1MN-01 2 182360122 182360122 C A ITGA4 Missense_Mutation p.S455Y 0.35 deleterious(0) probably_damaging(0.968) TCGA-C5-A1MN-01 2 18765969 18765969 C T NT5C1B Silent p.T238T 0.33 TCGA-C5-A1MN-01 2 204304738 204304738 C A RAPH1 Missense_Mutation p.D1059Y 0.33 unknown(0) TCGA-C5-A1MN-01 2 209010507 209010507 G A CRYGB Silent p.L81L 0.45 TCGA-C5-A1MN-01 2 220154978 220154978 C T PTPRN Silent p.V970V 0.46 TCGA-C5-A1MN-01 2 220164721 220164721 G A PTPRN Silent p.I474I 0.41 TCGA-C5-A1MN-01 2 220354509 220354509 G T SPEG Missense_Mutation p.E2923D 0.30 benign(0.155) TCGA-C5-A1MN-01 2 228221826 228221826 G C MFF Missense_Mutation p.R341P 0.35 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MN-01 2 241535885 241535885 C T CAPN10 Silent p.D476D 0.39 TCGA-C5-A1MN-01 2 30863168 30863168 G A LCLAT1 Missense_Mutation p.E310K 0.33 tolerated(0.06) benign(0.271) TCGA-C5-A1MN-01 2 30863174 30863174 G A LCLAT1 Missense_Mutation p.E312K 0.33 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MN-01 2 37873588 37873588 C A CDC42EP3 Missense_Mutation p.G48V 0.38 deleterious(0) probably_damaging(1) TCGA-C5-A1MN-01 2 74077619 74077619 C T STAMBP Silent p.L328L 0.30 TCGA-C5-A1MN-01 2 80773162 80773162 C T CTNNA2 Missense_Mutation p.S505L 0.35 deleterious(0) benign(0.349) TCGA-C5-A1MN-01 3 130399528 130399528 C T PIK3R4 Missense_Mutation p.V1279I 0.15 tolerated(0.22) benign(0.009) TCGA-C5-A1MN-01 3 16313177 16313177 C T OXNAD1 Missense_Mutation p.S44F 0.62 deleterious(0) probably_damaging(0.973) TCGA-C5-A1MN-01 3 98251163 98251163 C G GPR15 Missense_Mutation p.L96V 0.45 tolerated(0.5) benign(0.243) TCGA-C5-A1MN-01 4 173942728 173942728 C G GALNTL6 Silent p.L530L 0.65 TCGA-C5-A1MN-01 4 39924314 39924314 G A PDS5A Silent p.I194I 0.25 TCGA-C5-A1MN-01 4 87653763 87653763 G A PTPN13 Missense_Mutation p.E568K 0.38 deleterious(0.02) benign(0.364) TCGA-C5-A1MN-01 4 88356180 88356180 C T NUDT9 Missense_Mutation p.S52F 0.27 tolerated(0.46) benign(0.013) TCGA-C5-A1MN-01 5 10415612 10415612 G A MARCH6 Missense_Mutation p.R660H 0.84 deleterious(0) probably_damaging(0.996) TCGA-C5-A1MN-01 5 135692672 135692672 T C TRPC7 Missense_Mutation p.Q135R 0.45 tolerated(0.45) benign(0.004) TCGA-C5-A1MN-01 5 150887058 150887058 G C FAT2 Missense_Mutation p.F4058L 0.59 benign(0) TCGA-C5-A1MN-01 5 176936488 176936488 G T DOK3 Silent p.V74V 0.56 TCGA-C5-A1MN-01 5 70808182 70808182 G A BDP1 Missense_Mutation p.E1392K 0.64 deleterious(0.04) benign(0.356) TCGA-C5-A1MN-01 5 73981268 73981268 C T HEXB Silent p.L61L 0.64 TCGA-C5-A1MN-01 5 9122803 9122803 G A SEMA5A Silent p.C582C 0.22 TCGA-C5-A1MN-01 6 101312040 101312040 C T ASCC3 Nonsense_Mutation p.W47* 0.31 TCGA-C5-A1MN-01 6 10404765 10404765 G A TFAP2A Missense_Mutation p.S247L 0.44 deleterious(0.01) benign(0.196) TCGA-C5-A1MN-01 6 107908338 107908338 G A SOBP Missense_Mutation p.E210K 0.37 deleterious(0.01) possibly_damaging(0.857) TCGA-C5-A1MN-01 6 119345412 119345412 C A FAM184A Missense_Mutation p.K242N 0.29 tolerated(0.05) benign(0.258) TCGA-C5-A1MN-01 6 133004243 133004243 A G VNN1 3'UTR 0.39 TCGA-C5-A1MN-01 6 135679284 135679284 C G AHI1 Missense_Mutation p.D1051H 0.34 deleterious(0.05) possibly_damaging(0.907) TCGA-C5-A1MN-01 6 152639448 152639448 C T SYNE1 Intron 0.16 TCGA-C5-A1MN-01 6 24569028 24569028 G A KIAA0319 Silent p.L707L 0.71 TCGA-C5-A1MN-01 6 28116110 28116110 A C ZKSCAN8 5'UTR 0.40 TCGA-C5-A1MN-01 6 44254102 44254102 C T TCTE1 Missense_Mutation p.G149S 0.16 tolerated(0.1) benign(0.14) TCGA-C5-A1MN-01 6 56006594 56006594 C T COL21A1 Missense_Mutation p.D511N 0.28 tolerated(0.17) benign(0.02) TCGA-C5-A1MN-01 6 56468158 56468158 C T DST Intron 0.33 TCGA-C5-A1MN-01 6 76527246 76527246 C T MYO6 5'UTR 0.36 TCGA-C5-A1MN-01 7 102760181 102760181 C G NAPEPLD Missense_Mutation p.D262H 0.29 deleterious(0.02) benign(0.142) TCGA-C5-A1MN-01 7 11053396 11053396 G A PHF14 Silent p.E356E 0.40 TCGA-C5-A1MN-01 7 142148944 142148944 G A TRBV5-5 Silent p.L109L 0.35 TCGA-C5-A1MN-01 7 143657025 143657025 C G OR2F1 5'Flank 0.22 TCGA-C5-A1MN-01 7 146829596 146829596 C G CNTNAP2 Missense_Mutation p.S448C 0.47 deleterious(0.02) probably_damaging(0.935) TCGA-C5-A1MN-01 7 43484575 43484575 G A HECW1 Missense_Mutation p.E602K 0.42 deleterious_low_confidence(0.01) benign(0.024) TCGA-C5-A1MN-01 7 48273629 48273629 C T ABCA13 Silent p.L260L 0.26 TCGA-C5-A1MN-01 7 73657531 73657531 G A RFC2 Silent p.I160I 0.20 TCGA-C5-A1MN-01 7 90894521 90894521 C G FZD1 Missense_Mutation p.S109C 0.41 deleterious(0.01) possibly_damaging(0.894) TCGA-C5-A1MN-01 8 140630927 140630927 C T KCNK9 Silent p.T233T 0.77 TCGA-C5-A1MN-01 8 19250842 19250842 C G SH2D4A Silent p.L354L 0.49 TCGA-C5-A1MN-01 8 92020971 92020972 - T TMEM55A Frame_Shift_Ins p.I180Nfs*6 0.28 TCGA-C5-A1MN-01 9 101513319 101513319 C T ANKS6 Missense_Mutation p.E796K 0.35 deleterious(0) probably_damaging(0.998) TCGA-C5-A1MN-01 9 103035180 103035180 C T INVS Missense_Mutation p.R536C 0.36 deleterious(0) possibly_damaging(0.836) TCGA-C5-A1MN-01 9 113704217 113704217 C A LPAR1 Missense_Mutation p.A93S 0.31 deleterious(0.02) probably_damaging(0.953) TCGA-C5-A1MN-01 9 131476384 131476384 C G PKN3 Missense_Mutation p.I432M 0.37 deleterious(0) benign(0.039) TCGA-C5-A1MN-01 9 139399887 139399887 C G NOTCH1 Missense_Mutation p.W1487C 0.70 deleterious(0) probably_damaging(1) TCGA-C5-A1MN-01 9 139400124 139400124 C A NOTCH1 Missense_Mutation p.E1408D 0.76 tolerated(0.29) benign(0.014) TCGA-C5-A1MN-01 9 139400126 139400126 C T NOTCH1 Missense_Mutation p.E1408K 0.76 tolerated(0.14) possibly_damaging(0.495) TCGA-C5-A1MN-01 9 139401856 139401856 C G NOTCH1 Missense_Mutation p.E1182Q 1.00 tolerated(0.32) benign(0.021) TCGA-C5-A1MN-01 9 5080270 5080270 G A JAK2 Missense_Mutation p.E725K 0.50 tolerated(0.44) benign(0.013) TCGA-C5-A1MN-01 9 77353418 77353418 A T TRPM6 Missense_Mutation p.I1894N 0.26 deleterious(0.02) possibly_damaging(0.714) TCGA-C5-A1MN-01 9 88916323 88916323 C T ZCCHC6 Missense_Mutation p.E1430K 0.41 deleterious(0) benign(0.341) TCGA-C5-A1MN-01 9 96278353 96278353 C T FAM120A Missense_Mutation p.T407M 0.52 tolerated(0.15) possibly_damaging(0.522) TCGA-C5-A1MN-01 X 134856786 134856786 T A CT45A1 Silent p.R187R 0.04 TCGA-C5-A1MN-01 X 135429208 135429208 A G GPR112 Missense_Mutation p.R1115G 0.15 deleterious(0) benign(0.073) TCGA-C5-A1MN-01 X 140271259 140271259 C T LDOC1 5'UTR 0.24 TCGA-C5-A1MN-01 X 18622355 18622355 C T CDKL5 Silent p.N437N 0.33 TCGA-C5-A1MN-01 X 18924858 18924858 G A PHKA2 Missense_Mutation p.T891M 0.39 deleterious(0) probably_damaging(0.982) TCGA-C5-A1MN-01 X 30712558 30712558 G C GK Silent p.V152V 0.49 TCGA-C5-A1MN-01 X 47272358 47272358 C G ZNF157 Missense_Mutation p.H296D 0.32 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MN-01 X 48047122 48047122 C A SSX5 Missense_Mutation p.R212I 0.17 deleterious(0) probably_damaging(0.999) TCGA-C5-A1MN-01 X 49855455 49855456 TT C CLCN5 Frame_Shift_Del p.F758Pfs*3 0.31 TCGA-C5-A1MN-01 X 66765955 66765955 G A AR Missense_Mutation p.E323K 0.37 tolerated_low_confidence(0.11) benign(0.439) TCGA-C5-A1MN-01 X 69177110 69177110 C T EDA Intron 0.30 TCGA-C5-A1MN-01 X 84525754 84525754 G A ZNF711 Missense_Mutation p.M402I 0.40 tolerated(0.09) possibly_damaging(0.771) TCGA-C5-A1MP-01 11 64695312 64695312 G A PPP2R5B Silent p.E145E 0.09 TCGA-C5-A1MP-01 11 64695577 64695577 G C PPP2R5B Missense_Mutation p.D180H 0.07 deleterious(0) probably_damaging(0.997) TCGA-C5-A1MP-01 11 68312347 68312347 C G PPP6R3 Missense_Mutation p.S90C 0.10 deleterious(0) benign(0.363) TCGA-C5-A1MP-01 11 68312450 68312450 C T PPP6R3 Silent p.F124F 0.10 TCGA-C5-A1MP-01 12 11547437 11547437 A G PRB2 Missense_Mutation p.L31P 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-C5-A1MP-01 12 56221839 56221839 G A DNAJC14 Missense_Mutation p.P202S 0.30 tolerated(0.43) benign(0.002) TCGA-C5-A1MP-01 13 41134584 41134584 G C FOXO1 Nonsense_Mutation p.Y348* 0.07 TCGA-C5-A1MP-01 14 76438001 76438001 G A TGFB3 Missense_Mutation p.S138L 0.32 tolerated(0.12) benign(0.055) TCGA-C5-A1MP-01 14 92102780 92102780 C G CATSPERB Silent p.V577V 0.25 TCGA-C5-A1MP-01 16 30749702 30749702 G A SRCAP Missense_Mutation p.V2781I 0.25 unknown(0) TCGA-C5-A1MP-01 16 74528657 74528657 C A GLG1 Splice_Site p.X350_splice 0.28 TCGA-C5-A1MP-01 17 19451432 19451432 C G SLC47A1 Missense_Mutation p.D147E 0.17 tolerated(0.11) probably_damaging(0.923) TCGA-C5-A1MP-01 17 36485384 36485384 C T GPR179 Silent p.R1356R 0.09 TCGA-C5-A1MP-01 17 48469827 48469827 C G LRRC59 Missense_Mutation p.D121H 0.06 deleterious(0) possibly_damaging(0.615) TCGA-C5-A1MP-01 17 61882430 61882430 G C DDX42 Splice_Site p.X208_splice 0.05 TCGA-C5-A1MP-01 19 12502086 12502086 G A ZNF799 Missense_Mutation p.H376Y 0.04 tolerated(1) benign(0.029) TCGA-C5-A1MP-01 19 16790942 16790942 C T TMEM38A Missense_Mutation p.S91L 0.34 deleterious(0) possibly_damaging(0.744) TCGA-C5-A1MP-01 19 18684538 18684538 C T UBA52 Missense_Mutation p.S57L 0.28 deleterious(0.04) possibly_damaging(0.842) TCGA-C5-A1MP-01 19 53014316 53014316 G C ZNF578 Missense_Mutation p.E228Q 0.10 deleterious(0.04) possibly_damaging(0.673) TCGA-C5-A1MP-01 1 144879063 144879063 C T PDE4DIP Missense_Mutation p.E1463K 0.10 tolerated(0.24) possibly_damaging(0.782) TCGA-C5-A1MP-01 1 144879256 144879256 C A PDE4DIP Silent p.L1398L 0.12 TCGA-C5-A1MP-01 1 144879466 144879466 C T PDE4DIP Silent p.E1328E 0.09 TCGA-C5-A1MP-01 1 144879468 144879468 C T PDE4DIP Missense_Mutation p.E1328K 0.08 tolerated(0.85) benign(0.001) TCGA-C5-A1MP-01 1 150482445 150482445 C T ECM1 Silent p.L118L 0.16 TCGA-C5-A1MP-01 1 207644373 207644373 C A CR2 Silent p.L478L 0.12 TCGA-C5-A1MP-01 1 214830629 214830629 C T CENPF Missense_Mutation p.P2947S 0.18 benign(0.147) TCGA-C5-A1MP-01 1 216465554 216465554 T C USH2A Silent p.G601G 0.20 TCGA-C5-A1MP-01 1 248525354 248525354 A C OR2T4 Missense_Mutation p.I158L 0.02 deleterious(0) possibly_damaging(0.468) TCGA-C5-A1MP-01 1 6314644 6314644 G A GPR153 Missense_Mutation p.R108C 0.19 deleterious(0) probably_damaging(1) TCGA-C5-A1MP-01 20 30064159 30064159 G C REM1 5'UTR 0.16 TCGA-C5-A1MP-01 20 57571710 57571710 G A CTSZ Missense_Mutation p.S262L 0.05 deleterious(0) probably_damaging(1) TCGA-C5-A1MP-01 21 34918547 34918547 G T SON Nonsense_Mutation p.E36* 0.07 TCGA-C5-A1MP-01 21 34921970 34921970 G A SON Missense_Mutation p.D145N 0.09 possibly_damaging(0.539) TCGA-C5-A1MP-01 2 233899475 233899475 C T NEU2 Missense_Mutation p.S284L 0.07 tolerated(0.34) benign(0.116) TCGA-C5-A1MP-01 2 238820309 238820309 G A RAMP1 Missense_Mutation p.V111M 0.30 tolerated(0.06) benign(0.243) TCGA-C5-A1MP-01 2 26257498 26257498 C T RAB10 Silent p.D7D 0.35 TCGA-C5-A1MP-01 2 27599219 27599219 G A SNX17 Missense_Mutation p.D408N 0.11 tolerated(0.48) benign(0.04) TCGA-C5-A1MP-01 2 32666475 32666475 C G BIRC6 Missense_Mutation p.Q1297E 0.11 probably_damaging(0.93) TCGA-C5-A1MP-01 3 140401673 140401673 C T TRIM42 Silent p.L237L 0.12 TCGA-C5-A1MP-01 3 49051891 49051891 C G WDR6 Silent p.L944L 0.28 TCGA-C5-A1MP-01 3 49053403 49053403 C A DALRD3 Intron 0.26 TCGA-C5-A1MP-01 3 49053409 49053409 C T DALRD3 Silent p.E480E 0.24 TCGA-C5-A1MP-01 3 49054734 49054734 C G DALRD3 Missense_Mutation p.C285S 0.18 deleterious(0.04) possibly_damaging(0.688) TCGA-C5-A1MP-01 3 49054887 49054887 C G DALRD3 Missense_Mutation p.E260Q 0.25 tolerated(0.23) benign(0.013) TCGA-C5-A1MP-01 3 49201117 49201117 G A CCDC71 Silent p.L175L 0.58 TCGA-C5-A1MP-01 4 123665067 123665067 C T BBS12 Missense_Mutation p.R674C 0.39 deleterious(0) probably_damaging(1) TCGA-C5-A1MP-01 4 186180183 186180183 C T SNX25 Silent p.L68L 0.20 TCGA-C5-A1MP-01 4 69433510 69433510 C G UGT2B17 Missense_Mutation p.K231N 0.16 deleterious(0.04) benign(0.34) TCGA-C5-A1MP-01 5 98217695 98217695 C A CHD1 Missense_Mutation p.G951C 0.62 deleterious(0.01) possibly_damaging(0.865) TCGA-C5-A1MP-01 6 117662663 117662663 G A ROS1 Missense_Mutation p.A1601V 0.21 tolerated(0.15) benign(0.017) TCGA-C5-A1MP-01 6 152655170 152655170 A C SYNE1 Missense_Mutation p.F4256C 0.29 possibly_damaging(0.847) TCGA-C5-A1MP-01 6 17800192 17800192 C T KIF13A Silent p.L869L 0.08 TCGA-C5-A1MP-01 6 17800281 17800281 C G KIF13A Missense_Mutation p.E840Q 0.10 tolerated(0.21) benign(0.412) TCGA-C5-A1MP-01 6 17850652 17850652 G C KIF13A Missense_Mutation p.R207G 0.29 deleterious(0) probably_damaging(1) TCGA-C5-A1MP-01 6 24146261 24146261 G A NRSN1 3'UTR 0.25 TCGA-C5-A1MP-01 6 39286797 39286797 A G KCNK16 Missense_Mutation p.I109T 0.25 deleterious(0.02) possibly_damaging(0.674) TCGA-C5-A1MP-01 6 49582479 49582479 G A RHAG Missense_Mutation p.T243M 0.33 deleterious(0) probably_damaging(1) TCGA-C5-A1MP-01 7 74131214 74131214 G A GTF2I Missense_Mutation p.G275E 0.10 tolerated(0.17) possibly_damaging(0.602) TCGA-C5-A1MP-01 9 131513487 131513487 G A ZER1 Missense_Mutation p.R367W 0.39 deleterious(0) probably_damaging(0.976) TCGA-C5-A1MP-01 9 132630591 132630591 C T USP20 Missense_Mutation p.S333F 0.08 deleterious(0.04) possibly_damaging(0.493) TCGA-C5-A1MP-01 X 106185181 106185181 C T MORC4 Missense_Mutation p.D883N 0.07 tolerated(0.09) benign(0.367) TCGA-C5-A1MP-01 X 134185742 134185742 T A FAM127B 3'UTR 0.21 TCGA-C5-A1MP-01 X 153128962 153128962 G A L1CAM Missense_Mutation p.P1167L 0.14 deleterious(0.01) probably_damaging(1) TCGA-C5-A1MP-01 X 153629109 153629109 G A RPL10 Missense_Mutation p.E187K 0.14 tolerated(0.08) benign(0.03) TCGA-C5-A1MP-01 X 75394741 75394741 C G PBDC1 Missense_Mutation p.A38G 0.06 deleterious(0.01) possibly_damaging(0.665) TCGA-C5-A1MP-01 X 91132649 91132649 C T PCDH11X Silent p.F470F 0.46 TCGA-C5-A1MQ-01 11 120312840 120312840 A T ARHGEF12 Nonsense_Mutation p.K411* 0.24 TCGA-C5-A1MQ-01 11 133791101 133791101 T C IGSF9B Missense_Mutation p.E840G 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-C5-A1MQ-01 11 94801103 94801103 C T SRSF8 Missense_Mutation p.P238L 0.21 deleterious_low_confidence(0) unknown(0) TCGA-C5-A1MQ-01 12 101520733 101520733 G A ANO4 Missense_Mutation p.R883K 0.10 tolerated(1) probably_damaging(0.971) TCGA-C5-A1MQ-01 12 43826221 43826221 C G ADAMTS20 Missense_Mutation p.M994I 0.36 tolerated(0.21) benign(0.026) TCGA-C5-A1MQ-01 13 77460014 77460014 G A KCTD12 Silent p.R90R 0.29 TCGA-C5-A1MQ-01 14 105684015 105684015 G A BRF1 Silent p.L546L 0.50 TCGA-C5-A1MQ-01 15 32926203 32926203 G A ARHGAP11A Silent p.L435L 0.22 TCGA-C5-A1MQ-01 15 69006362 69006362 G C CORO2B Missense_Mutation p.Q249H 0.08 deleterious(0) probably_damaging(0.966) TCGA-C5-A1MQ-01 16 1392980 1392980 G A BAIAP3 Missense_Mutation p.A445T 0.32 tolerated(0.19) benign(0.443) TCGA-C5-A1MQ-01 16 787225 787225 C G NARFL Missense_Mutation p.Q89H 0.06 deleterious(0) probably_damaging(0.993) TCGA-C5-A1MQ-01 17 10541420 10541420 G A MYH3 Silent p.S1223S 0.37 TCGA-C5-A1MQ-01 17 18023480 18023480 G A MYO15A Missense_Mutation p.A456T 0.29 possibly_damaging(0.499) TCGA-C5-A1MQ-01 19 45261992 45261992 C G BCL3 Missense_Mutation p.I357M 0.50 deleterious(0.03) benign(0.415) TCGA-C5-A1MQ-01 19 54376790 54376790 G A MYADM Missense_Mutation p.V3M 0.24 tolerated_low_confidence(0.17) possibly_damaging(0.861) TCGA-C5-A1MQ-01 1 154558839 154558839 C G ADAR Missense_Mutation p.G1007A 0.48 deleterious(0) probably_damaging(1) TCGA-C5-A1MQ-01 1 160535532 160535532 G A CD84 Missense_Mutation p.P17L 0.42 tolerated(0.29) benign(0.004) TCGA-C5-A1MQ-01 1 178425849 178425864 CCTACAGGCGACCGTG - RASAL2 Splice_Site p.X738_splice 0.14 TCGA-C5-A1MQ-01 1 198668775 198668790 CAGCGGCTCCGCCGCC - PTPRC Frame_Shift_Del p.F127Lfs*35 0.19 TCGA-C5-A1MQ-01 1 207890923 207890923 G C CR1L Missense_Mutation p.R510T 0.10 tolerated(0.23) benign(0.159) TCGA-C5-A1MQ-01 1 237841392 237841392 G C RYR2 Missense_Mutation p.E2959Q 0.22 benign(0.025) TCGA-C5-A1MQ-01 20 57899466 57899466 C T EDN3 Silent p.L223L 0.04 TCGA-C5-A1MQ-01 21 30435830 30435830 C T CCT8 Missense_Mutation p.A262T 0.06 deleterious(0) probably_damaging(0.986) TCGA-C5-A1MQ-01 22 31535960 31535960 C T PLA2G3 Silent p.G127G 0.10 TCGA-C5-A1MQ-01 2 170163851 170163851 T A LRP2 Missense_Mutation p.S123C 0.09 possibly_damaging(0.563) TCGA-C5-A1MQ-01 2 27275933 27275933 G C AGBL5 Missense_Mutation p.G36A 0.14 tolerated(0.58) benign(0.001) TCGA-C5-A1MQ-01 2 27276028 27276028 G A AGBL5 Missense_Mutation p.E68K 0.22 deleterious(0.03) possibly_damaging(0.811) TCGA-C5-A1MQ-01 2 27276036 27276036 G A AGBL5 Silent p.G70G 0.21 TCGA-C5-A1MQ-01 2 27276872 27276872 G T AGBL5 Nonsense_Mutation p.E166* 0.24 TCGA-C5-A1MQ-01 2 27278030 27278030 G A AGBL5 Missense_Mutation p.D273N 0.28 tolerated(0.2) benign(0.147) TCGA-C5-A1MQ-01 2 27278089 27278089 G A AGBL5 Silent p.L292L 0.31 TCGA-C5-A1MQ-01 2 27278589 27278589 G A AGBL5 Silent p.L316L 0.30 TCGA-C5-A1MQ-01 2 27278878 27278878 G T AGBL5 Nonsense_Mutation p.E413* 0.29 TCGA-C5-A1MQ-01 2 27278963 27278963 G A AGBL5 Missense_Mutation p.G441D 0.23 deleterious(0) probably_damaging(0.996) TCGA-C5-A1MQ-01 2 3595526 3595526 G A RNASEH1 Nonsense_Mutation p.Q257* 0.07 TCGA-C5-A1MQ-01 3 105290745 105290745 A C ALCAM Missense_Mutation p.K572Q 0.14 deleterious(0.01) unknown(0) TCGA-C5-A1MQ-01 3 126736417 126736417 C T PLXNA1 Silent p.T1142T 0.26 TCGA-C5-A1MQ-01 3 14798948 14798948 C T C3orf20 Missense_Mutation p.R671W 0.18 deleterious(0) probably_damaging(1) TCGA-C5-A1MQ-01 3 190147473 190147473 G T TMEM207 Missense_Mutation p.Q118K 0.18 tolerated(0.3) benign(0.306) TCGA-C5-A1MQ-01 3 49002355 49002355 C G ARIH2 Nonsense_Mutation p.Y109* 0.28 TCGA-C5-A1MQ-01 3 49055216 49055216 G A DALRD3 Missense_Mutation p.S183L 0.28 tolerated(0.32) benign(0.008) TCGA-C5-A1MQ-01 3 52821211 52821211 G A ITIH1 Silent p.P632P 0.24 TCGA-C5-A1MQ-01 4 5620291 5620291 G A EVC2 Nonsense_Mutation p.R874* 0.23 TCGA-C5-A1MQ-01 5 149008510 149008510 C G ARHGEF37 Missense_Mutation p.S600C 0.14 tolerated(0.19) possibly_damaging(0.474) TCGA-C5-A1MQ-01 5 156770011 156770011 G A FNDC9 Silent p.L178L 0.11 TCGA-C5-A1MQ-01 5 56205485 56205485 C T SETD9 Silent p.L5L 0.32 TCGA-C5-A1MQ-01 6 26225698 26225698 G C HIST1H3E Missense_Mutation p.E106Q 0.71 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-C5-A1MQ-01 6 37611649 37611649 G A MDGA1 Silent p.L824L 0.70 TCGA-C5-A1MQ-01 6 49660321 49660321 G T CRISP2 3'UTR 0.64 TCGA-C5-A1MQ-01 6 51701256 51701256 C A PKHD1 Missense_Mutation p.G2707C 0.26 deleterious(0.01) probably_damaging(0.983) TCGA-C5-A1MQ-01 7 107577541 107577541 G A LAMB1 Missense_Mutation p.R1315W 0.03 tolerated(0.09) possibly_damaging(0.656) TCGA-C5-A1MQ-01 7 2952970 2952970 C T CARD11 Silent p.Q990Q 0.37 TCGA-C5-A1MQ-01 7 76239524 76239524 C A POMZP3 3'UTR 0.17 TCGA-C5-A1MQ-01 7 76889321 76889321 T C CCDC146 Intron 0.19 TCGA-C5-A1MQ-01 7 99695255 99695255 G A MCM7 Nonsense_Mutation p.R367* 0.27 TCGA-C5-A1MQ-01 9 135929311 135929311 C T GTF3C5 Missense_Mutation p.R324C 0.09 deleterious(0) probably_damaging(1) TCGA-C5-A1MQ-01 X 48972077 48972077 C T GPKOW Intron 0.31 TCGA-C5-A1MQ-01 X 73962692 73962692 G A KIAA2022 Missense_Mutation p.T567I 0.11 deleterious(0) probably_damaging(0.997) TCGA-C5-A2LS-01 10 102051081 102051081 G A PKD2L1 Nonsense_Mutation p.R662* 0.23 TCGA-C5-A2LS-01 10 112839597 112839600 CAGC - ADRA2A 3'UTR 0.29 TCGA-C5-A2LS-01 10 11567450 11567450 C G USP6NL Missense_Mutation p.E47D 0.36 tolerated(0.19) benign(0.007) TCGA-C5-A2LS-01 11 106856836 106856836 G A GUCY1A2 Missense_Mutation p.L109F 0.30 tolerated(0.09) possibly_damaging(0.723) TCGA-C5-A2LS-01 11 130005463 130005463 C A APLP2 Missense_Mutation p.L564I 0.43 tolerated(0.06) probably_damaging(0.988) TCGA-C5-A2LS-01 11 46430214 46430214 C T AMBRA1 Silent p.L994L 0.33 TCGA-C5-A2LS-01 11 61563301 61563301 C G FEN1 Silent p.P156P 0.44 TCGA-C5-A2LS-01 11 63072233 63072233 G T SLC22A10 Silent p.T490T 0.25 TCGA-C5-A2LS-01 11 65650281 65650281 C T CTSW Silent p.F217F 0.30 TCGA-C5-A2LS-01 11 95826265 95826265 G A MAML2 Silent p.F310F 0.37 TCGA-C5-A2LS-01 12 117479757 117479757 G T TESC Missense_Mutation p.L188M 0.22 tolerated(0.07) benign(0.323) TCGA-C5-A2LS-01 12 118298123 118298123 G A KSR2 Silent p.I98I 0.16 TCGA-C5-A2LS-01 12 59271281 59271281 T C LRIG3 Missense_Mutation p.I813V 0.08 deleterious(0.02) possibly_damaging(0.893) TCGA-C5-A2LS-01 12 68553365 68553365 G C IFNG Missense_Mutation p.Q11E 0.29 deleterious(0.02) benign(0.184) TCGA-C5-A2LS-01 13 84454533 84454533 C T SLITRK1 Silent p.L370L 0.33 TCGA-C5-A2LS-01 14 100615443 100615443 G A DEGS2 Silent p.F229F 0.40 TCGA-C5-A2LS-01 14 102664108 102664108 T C WDR20 Missense_Mutation p.L150S 0.40 tolerated_low_confidence(0.2) possibly_damaging(0.587) TCGA-C5-A2LS-01 14 105420220 105420220 G A AHNAK2 Missense_Mutation p.A523V 0.39 benign(0.024) TCGA-C5-A2LS-01 14 71576869 71576869 T A PCNX 3'UTR 0.32 TCGA-C5-A2LS-01 14 74826574 74826574 C T VRTN 3'UTR 0.30 TCGA-C5-A2LS-01 14 95574781 95574781 C T DICER1 Silent p.V772V 0.24 TCGA-C5-A2LS-01 15 31295003 31295003 G A TRPM1 Silent p.N1317N 0.18 TCGA-C5-A2LS-01 16 20043656 20043656 T C GPR139 Missense_Mutation p.T155A 0.23 tolerated(1) benign(0.001) TCGA-C5-A2LS-01 16 30680445 30680445 C T FBRS Missense_Mutation p.R808W 0.23 possibly_damaging(0.891) TCGA-C5-A2LS-01 16 48385539 48385539 G A LONP2 Silent p.L795L 0.53 TCGA-C5-A2LS-01 17 1543025 1543025 G C SCARF1 Missense_Mutation p.S384C 0.38 deleterious(0) probably_damaging(0.971) TCGA-C5-A2LS-01 18 61390407 61390407 C T SERPINB11 Missense_Mutation p.S318F 0.26 deleterious(0) probably_damaging(1) TCGA-C5-A2LS-01 19 38591826 38591826 G A SIPA1L3 Silent p.L663L 0.46 TCGA-C5-A2LS-01 1 146672991 146672991 T A FMO5 Missense_Mutation p.E309V 0.20 deleterious(0) possibly_damaging(0.903) TCGA-C5-A2LS-01 1 155185426 155185426 G C MTX1 3'Flank 0.22 TCGA-C5-A2LS-01 1 156264186 156264186 C T C1orf85 Silent p.R183R 0.22 TCGA-C5-A2LS-01 1 183177044 183177044 G C LAMC2 Missense_Mutation p.Q36H 0.25 deleterious(0) probably_damaging(0.914) TCGA-C5-A2LS-01 1 183947545 183947545 C A COLGALT2 Nonsense_Mutation p.E125* 0.30 TCGA-C5-A2LS-01 1 196295846 196295846 C T KCNT2 Splice_Site p.X759_splice 0.22 TCGA-C5-A2LS-01 1 24201626 24201626 G A CNR2 Missense_Mutation p.S161L 0.23 deleterious(0.02) benign(0.345) TCGA-C5-A2LS-01 1 247752483 247752483 C A OR2G2 Silent p.G274G 0.27 TCGA-C5-A2LS-01 1 3639969 3639969 C T TP73 Missense_Mutation p.S223L 0.42 deleterious(0.01) possibly_damaging(0.828) TCGA-C5-A2LS-01 1 91859873 91859873 G A HFM1 Nonsense_Mutation p.Q91* 0.32 TCGA-C5-A2LS-01 20 21492910 21492910 C T NKX2-2 Missense_Mutation p.R158H 0.29 deleterious(0) probably_damaging(0.996) TCGA-C5-A2LS-01 20 31024506 31024506 C T ASXL1 Missense_Mutation p.P1331S 0.44 tolerated_low_confidence(0.09) benign(0.011) TCGA-C5-A2LS-01 20 62654230 62654230 C T PRPF6 Missense_Mutation p.R590W 0.38 deleterious(0) probably_damaging(0.918) TCGA-C5-A2LS-01 22 18324384 18324384 G T MICAL3 Intron 0.31 TCGA-C5-A2LS-01 2 113676314 113676314 C T IL37 Silent p.N195N 0.32 TCGA-C5-A2LS-01 2 119913847 119913847 C G C1QL2 3'UTR 0.34 TCGA-C5-A2LS-01 2 178483126 178483126 C T TTC30A Missense_Mutation p.A102T 0.39 tolerated(0.39) benign(0.002) TCGA-C5-A2LS-01 2 207513559 207513560 - AT DYTN 3'Flank 0.33 TCGA-C5-A2LS-01 2 218925822 218925822 G C CXCR2P1 RNA 0.44 TCGA-C5-A2LS-01 2 219826800 219826800 C T CDK5R2 3'UTR 0.42 TCGA-C5-A2LS-01 2 220401843 220401849 GAGCAGC - ASIC4 Frame_Shift_Del p.R539Pfs*41 0.25 TCGA-C5-A2LS-01 2 241516317 241516317 C T RNPEPL1 Silent p.N367N 0.41 TCGA-C5-A2LS-01 2 44101013 44101013 C T ABCG8 Silent p.F433F 0.36 TCGA-C5-A2LS-01 3 164906468 164906468 G A SLITRK3 Silent p.G717G 0.09 TCGA-C5-A2LS-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.64 deleterious(0.02) probably_damaging(0.959) TCGA-C5-A2LS-01 3 44285827 44285827 C A TOPAZ1 Missense_Mutation p.S610Y 0.47 deleterious(0.01) probably_damaging(0.971) TCGA-C5-A2LS-01 3 53003241 53003241 G A SFMBT1 5'UTR 0.24 TCGA-C5-A2LS-01 4 74735621 74735633 AGAGCCACACTCA - CXCL1 Splice_Site p.X76_splice 0.16 TCGA-C5-A2LS-01 5 140165938 140165938 C T PCDHA1 Silent p.L21L 0.30 TCGA-C5-A2LS-01 6 117083213 117083213 C T FAM162B Missense_Mutation p.R106Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-C5-A2LS-01 6 170176052 170176052 G A ERMARD Missense_Mutation p.E471K 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-C5-A2LS-01 6 51732836 51732836 G T PKHD1 Missense_Mutation p.H2520N 0.50 deleterious(0.01) possibly_damaging(0.905) TCGA-C5-A2LS-01 6 51799070 51799070 C T PKHD1 Missense_Mutation p.A1987T 0.39 tolerated(0.41) benign(0.244) TCGA-C5-A2LS-01 6 73951257 73951257 G A KHDC1 Missense_Mutation p.P237S 0.44 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-C5-A2LS-01 7 106300238 106300238 G A CCDC71L 3'UTR 0.48 TCGA-C5-A2LS-01 7 106508173 106508173 C T PIK3CG Missense_Mutation p.T56M 0.32 tolerated(0.05) benign(0.013) TCGA-C5-A2LS-01 7 39472873 39472873 C T POU6F2 Silent p.P408P 0.35 TCGA-C5-A2LS-01 7 44113615 44113615 G - POLM Frame_Shift_Del p.L361Cfs*55 0.32 TCGA-C5-A2LS-01 7 80103615 80103615 G A GNAT3 Missense_Mutation p.T181M 0.38 deleterious(0) probably_damaging(0.996) TCGA-C5-A2LS-01 8 125711807 125711807 G A MTSS1 Silent p.D56D 0.21 TCGA-C5-A2LS-01 8 12884913 12884913 C T KIAA1456 3'UTR 0.37 TCGA-C5-A2LS-01 8 1652065 1652065 G A DLGAP2 3'UTR 0.39 TCGA-C5-A2LS-01 8 22021029 22021029 G T SFTPC Missense_Mutation p.E135D 0.21 tolerated(1) benign(0.065) TCGA-C5-A2LS-01 8 22021506 22021506 C T SFTPC Silent p.G182G 0.27 TCGA-C5-A2LS-01 9 111655308 111655308 G A IKBKAP Silent p.N972N 0.38 TCGA-C5-A2LS-01 9 35713251 35713251 C T TLN1 Silent p.V1098V 0.33 TCGA-C5-A2LS-01 9 916849 916849 C T DMRT1 Silent p.S303S 0.25 TCGA-C5-A2LS-01 X 105905424 105905424 G A CXorf57 Missense_Mutation p.D720N 0.23 deleterious(0) benign(0.001) TCGA-C5-A2LS-01 X 125684544 125684544 G A DCAF12L1 3'UTR 0.24 TCGA-C5-A2LS-01 X 135570198 135570198 C T BRS3 5'UTR 0.24 TCGA-C5-A2LS-01 X 152018902 152018902 G C NSDHL Missense_Mutation p.D68H 0.25 deleterious(0) probably_damaging(0.996) TCGA-C5-A2LS-01 X 17739610 17739610 C T NHS Missense_Mutation p.P301L 0.23 deleterious(0) probably_damaging(0.999) TCGA-C5-A2LS-01 X 34149765 34149765 G A FAM47A Silent p.L211L 0.23 TCGA-C5-A2LS-01 X 69615617 69615617 G T KIF4A Missense_Mutation p.D777Y 0.55 deleterious(0) possibly_damaging(0.713) TCGA-C5-A2LS-01 X 6995415 6995415 G A HDHD1 Missense_Mutation p.S142L 0.15 tolerated(0.07) benign(0.041) TCGA-C5-A2LS-01 X 79279576 79279576 C T TBX22 Missense_Mutation p.S124F 0.19 deleterious(0) probably_damaging(0.996) TCGA-C5-A2LT-01 10 95386580 95386580 C G PDE6C Missense_Mutation p.H341Q 0.34 deleterious(0.03) probably_damaging(1) TCGA-C5-A2LT-01 11 129802072 129802072 C A PRDM10 Silent p.R404R 0.10 TCGA-C5-A2LT-01 11 49974616 49974616 C T OR4C13 Silent p.V214V 0.27 TCGA-C5-A2LT-01 12 78362393 78362393 G A NAV3 Silent p.Q194Q 0.47 TCGA-C5-A2LT-01 12 88479851 88479851 G A CEP290 Silent p.L1468L 0.32 TCGA-C5-A2LT-01 13 108518604 108518604 G A FAM155A Missense_Mutation p.S114L 0.36 tolerated_low_confidence(0.1) benign(0.113) TCGA-C5-A2LT-01 13 25171731 25171731 C A RP11-556N21.1 RNA 0.08 TCGA-C5-A2LT-01 13 95050858 95050858 C T GPC6 Silent p.N476N 0.23 TCGA-C5-A2LT-01 14 23395466 23395466 A C PRMT5 Missense_Mutation p.I218S 0.21 deleterious(0) possibly_damaging(0.826) TCGA-C5-A2LT-01 14 25044510 25044510 C T CTSG Missense_Mutation p.R55Q 0.37 tolerated(0.3) possibly_damaging(0.864) TCGA-C5-A2LT-01 14 77845003 77845003 G C SAMD15 Missense_Mutation p.E414D 0.27 tolerated(0.08) benign(0.161) TCGA-C5-A2LT-01 15 65477517 65477517 C T CLPX 5'UTR 0.27 TCGA-C5-A2LT-01 15 69113184 69113184 C T ANP32A 5'UTR 0.30 TCGA-C5-A2LT-01 15 80216339 80216339 G A C15ORF37 3'UTR 0.33 TCGA-C5-A2LT-01 16 2156483 2156483 G A PKD1 Missense_Mutation p.R2469C 0.40 possibly_damaging(0.901) TCGA-C5-A2LT-01 17 14139317 14139317 C T CDRT15 Silent p.E141E 0.20 TCGA-C5-A2LT-01 17 18857169 18857169 C A SLC5A10 Intron 0.33 TCGA-C5-A2LT-01 17 28539838 28539838 G A SLC6A4 Missense_Mutation p.S375L 0.58 deleterious(0.02) probably_damaging(1) TCGA-C5-A2LT-01 19 9066786 9066786 G T MUC16 Missense_Mutation p.A6887E 0.31 unknown(0) TCGA-C5-A2LT-01 1 181767500 181767500 C T CACNA1E Nonsense_Mutation p.Q2158* 0.43 TCGA-C5-A2LT-01 1 92193313 92193313 A C TGFBR3 Missense_Mutation p.L263R 0.51 tolerated(0.34) benign(0.058) TCGA-C5-A2LT-01 20 16252992 16252992 T A KIF16B 3'UTR 0.23 TCGA-C5-A2LT-01 20 32256062 32256062 G T ACTL10 3'UTR 0.35 TCGA-C5-A2LT-01 20 44803546 44803546 C T CDH22 Missense_Mutation p.E696K 0.16 tolerated(0.22) possibly_damaging(0.515) TCGA-C5-A2LT-01 20 60891730 60891730 G A LAMA5 Missense_Mutation p.L2585F 0.34 benign(0.056) TCGA-C5-A2LT-01 22 39884875 39884875 C T MGAT3 Missense_Mutation p.T508M 0.42 tolerated_low_confidence(0.07) benign(0.046) TCGA-C5-A2LT-01 2 141232775 141232775 C T LRP1B Missense_Mutation p.R3186H 0.37 benign(0) TCGA-C5-A2LT-01 3 122003488 122003488 G A CASR Missense_Mutation p.R906H 0.68 tolerated_low_confidence(0.11) probably_damaging(0.996) TCGA-C5-A2LT-01 3 184024241 184024241 C A PSMD2 Missense_Mutation p.D636E 0.18 tolerated(0.53) benign(0.002) TCGA-C5-A2LT-01 3 19384207 19384207 G A KCNH8 Splice_Site p.X190_splice 0.20 TCGA-C5-A2LT-01 3 239519 239519 T C CHL1 Intron 0.24 TCGA-C5-A2LT-01 5 175307320 175307320 C T CPLX2 3'UTR 0.17 TCGA-C5-A2LT-01 5 176883196 176883196 G T PRR7 3'UTR 0.26 TCGA-C5-A2LT-01 5 41312919 41312919 G T PLCXD3 3'UTR 0.28 TCGA-C5-A2LT-01 5 55407087 55407087 A G ANKRD55 Silent p.S496S 0.39 TCGA-C5-A2LT-01 6 130761908 130761908 G A TMEM200A Missense_Mutation p.R114H 0.45 tolerated(0.06) benign(0.002) TCGA-C5-A2LT-01 6 157502211 157502211 G C ARID1B Missense_Mutation p.E1082Q 0.21 probably_damaging(0.989) TCGA-C5-A2LT-01 6 159653389 159653389 G A FNDC1 Silent p.S615S 0.16 TCGA-C5-A2LT-01 7 134632365 134632365 G A CALD1 Missense_Mutation p.E547K 0.39 deleterious(0) unknown(0) TCGA-C5-A2LT-01 7 138265440 138265440 G A TRIM24 Splice_Site p.X906_splice 0.29 TCGA-C5-A2LT-01 7 21737744 21737744 A C DNAH11 Missense_Mutation p.L2038F 0.28 probably_damaging(1) TCGA-C5-A2LT-01 7 86522347 86522347 C A KIAA1324L Missense_Mutation p.A919S 0.20 tolerated(1) benign(0) TCGA-C5-A2LT-01 9 116817776 116817776 T A ZNF618 3'UTR 0.44 TCGA-C5-A2LT-01 9 125719416 125719416 C G RABGAP1 Silent p.V26V 0.43 TCGA-C5-A2LT-01 9 139726170 139726170 G A RABL6 Intron 0.42 TCGA-C5-A2LT-01 9 21970921 21970921 T C CDKN2A Missense_Mutation p.D146G 0.35 tolerated_low_confidence(0.08) benign(0.047) TCGA-C5-A2LT-01 9 40774871 40774871 A G ZNF658 Missense_Mutation p.I135T 0.28 tolerated(0.17) benign(0.014) TCGA-C5-A2LT-01 9 71866119 71866119 A G TJP2 Missense_Mutation p.T1085A 0.22 tolerated_low_confidence(0.67) benign(0.149) TCGA-C5-A2LT-01 X 110988036 110988036 G T ALG13 Missense_Mutation p.A946S 0.20 tolerated(0.84) benign(0) TCGA-C5-A2LT-01 X 13778505 13778505 C T OFD1 Silent p.A642A 0.28 TCGA-C5-A2LT-01 X 152113888 152113888 G T ZNF185 Missense_Mutation p.R461I 0.24 tolerated(0.05) benign(0.18) TCGA-C5-A2LT-01 X 45606471 45606471 C T MIR222 RNA 0.28 TCGA-C5-A2LT-01 X 68061520 68061520 G C EFNB1 3'UTR 0.19 TCGA-C5-A2LT-01 X 76762139 76762139 A C ATRX 3'UTR 0.10 TCGA-C5-A2LT-01 X 89177675 89177675 C T TGIF2LX Silent p.V197V 0.46 TCGA-C5-A2LV-01 10 103867656 103867656 G A LDB1 3'UTR 0.39 TCGA-C5-A2LV-01 10 105358760 105358760 G C SH3PXD2A 3'UTR 0.38 TCGA-C5-A2LV-01 11 17409628 17409628 C T KCNJ11 Missense_Mutation p.R4H 0.45 deleterious(0) probably_damaging(0.996) TCGA-C5-A2LV-01 11 18955549 18955549 G A MRGPRX1 Silent p.S261S 0.35 TCGA-C5-A2LV-01 11 44104995 44104995 G C ACCS Missense_Mutation p.E426Q 0.27 deleterious(0) probably_damaging(0.939) TCGA-C5-A2LV-01 11 62346056 62346056 G A TUT1 Silent p.H417H 0.21 TCGA-C5-A2LV-01 11 64940277 64940277 G A SPDYC Silent p.P213P 0.42 TCGA-C5-A2LV-01 11 75898088 75898088 C T WNT11 3'UTR 0.16 TCGA-C5-A2LV-01 12 100774588 100774588 G A SLC17A8 Missense_Mutation p.G71S 0.49 tolerated(0.11) probably_damaging(0.999) TCGA-C5-A2LV-01 12 102791937 102791937 C T IGF1 3'UTR 0.55 TCGA-C5-A2LV-01 12 119419465 119419465 C T SRRM4 5'UTR 0.61 TCGA-C5-A2LV-01 12 21679310 21679310 T G C12orf39 5'UTR 0.36 TCGA-C5-A2LV-01 12 53684161 53684161 G C ESPL1 Missense_Mutation p.D1758H 0.20 deleterious(0) probably_damaging(0.998) TCGA-C5-A2LV-01 13 37678883 37678883 G T CSNK1A1L Missense_Mutation p.Q171K 0.37 tolerated_low_confidence(0.36) benign(0.139) TCGA-C5-A2LV-01 14 20344622 20344622 C T OR4K2 Missense_Mutation p.L66F 0.24 deleterious(0) probably_damaging(0.999) TCGA-C5-A2LV-01 14 23859595 23859595 C G MYH6 Missense_Mutation p.E1135Q 0.23 deleterious(0.01) probably_damaging(1) TCGA-C5-A2LV-01 14 58965657 58965657 C T KIAA0586 Missense_Mutation p.R1436W 0.28 tolerated(0.07) benign(0.004) TCGA-C5-A2LV-01 14 77715710 77715710 C T TMEM63C Silent p.N649N 0.15 TCGA-C5-A2LV-01 15 26806129 26806129 C A GABRB3 Nonsense_Mutation p.E344* 0.40 TCGA-C5-A2LV-01 15 27182439 27182439 C A GABRA5 Missense_Mutation p.Q230K 0.20 tolerated(0.08) benign(0.174) TCGA-C5-A2LV-01 15 90768581 90768581 C G SEMA4B Missense_Mutation p.I491M 0.15 deleterious(0.01) possibly_damaging(0.481) TCGA-C5-A2LV-01 15 92706506 92706506 G A SLCO3A1 3'UTR 0.41 TCGA-C5-A2LV-01 16 15865464 15865464 G A MYH11 Missense_Mutation p.A339V 0.21 probably_damaging(0.999) TCGA-C5-A2LV-01 16 1820222 1820222 G A MAPK8IP3 3'UTR 0.66 TCGA-C5-A2LV-01 16 21170742 21170742 G C DNAH3 Silent p.L7L 0.32 TCGA-C5-A2LV-01 17 12888013 12888013 C T ARHGAP44 Missense_Mutation p.S702L 0.31 deleterious_low_confidence(0.01) benign(0.089) TCGA-C5-A2LV-01 17 27937727 27937727 C T ANKRD13B Missense_Mutation p.L283F 0.26 tolerated(0.21) probably_damaging(0.977) TCGA-C5-A2LV-01 17 42929146 42929146 G A EFTUD2 Missense_Mutation p.R919C 0.42 deleterious(0) probably_damaging(0.953) TCGA-C5-A2LV-01 17 4845733 4845733 G A RNF167 Missense_Mutation p.R88Q 0.63 deleterious(0) probably_damaging(0.988) TCGA-C5-A2LV-01 17 48668877 48668877 G A CACNA1G Silent p.V845V 0.43 TCGA-C5-A2LV-01 17 56676893 56676893 C G TEX14 Missense_Mutation p.E611Q 0.33 tolerated(0.48) benign(0.049) TCGA-C5-A2LV-01 18 21883663 21883663 T G OSBPL1A Missense_Mutation p.Q371P 0.31 deleterious(0.02) possibly_damaging(0.772) TCGA-C5-A2LV-01 18 7567853 7567853 G T PTPRM Nonsense_Mutation p.G13* 0.34 TCGA-C5-A2LV-01 18 77513971 77513971 C T CTDP1 3'UTR 0.38 TCGA-C5-A2LV-01 19 1486914 1486914 C T PCSK4 Missense_Mutation p.E336K 0.30 deleterious(0) probably_damaging(1) TCGA-C5-A2LV-01 19 16296555 16296555 C T FAM32A Silent p.F65F 0.28 TCGA-C5-A2LV-01 19 18728962 18728962 C T TMEM59L Intron 0.16 TCGA-C5-A2LV-01 19 40392554 40392554 G A FCGBP Silent p.P2650P 0.17 TCGA-C5-A2LV-01 19 40521832 40521832 G A ZNF546 3'UTR 0.26 TCGA-C5-A2LV-01 19 43383674 43383674 G A PSG1 Silent p.L20L 0.20 TCGA-C5-A2LV-01 19 49377035 49377035 C T PPP1R15A Missense_Mutation p.S182L 0.39 deleterious(0.03) possibly_damaging(0.879) TCGA-C5-A2LV-01 19 56155984 56155984 C T ZNF581 Missense_Mutation p.S16F 0.21 tolerated(0.08) benign(0.003) TCGA-C5-A2LV-01 19 58132625 58132625 G C ZNF134 Missense_Mutation p.D380H 0.25 deleterious(0.03) probably_damaging(1) TCGA-C5-A2LV-01 19 58571474 58571474 G A ZNF135 Intron 0.29 TCGA-C5-A2LV-01 19 5866854 5866854 C T FUT5 Missense_Mutation p.E295K 0.30 deleterious(0) probably_damaging(0.999) TCGA-C5-A2LV-01 19 9070889 9070889 G A MUC16 Silent p.A5519A 0.17 TCGA-C5-A2LV-01 1 111439330 111439330 C G CD53 Missense_Mutation p.S160C 0.22 tolerated(0.26) probably_damaging(0.988) TCGA-C5-A2LV-01 1 11983154 11983154 C T KIAA2013 Missense_Mutation p.V476M 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-C5-A2LV-01 1 151011465 151011465 G A BNIPL Silent p.S132S 0.25 TCGA-C5-A2LV-01 1 16918410 16918410 C T NBPF1 Missense_Mutation p.R36K 0.06 tolerated(0.09) benign(0.14) TCGA-C5-A2LV-01 1 237674994 237674994 G C RYR2 Missense_Mutation p.D909H 0.33 probably_damaging(0.958) TCGA-C5-A2LV-01 1 237875071 237875071 C T RYR2 Silent p.F3419F 0.43 TCGA-C5-A2LV-01 1 27271882 27271882 T C NUDC Missense_Mutation p.I248T 0.36 deleterious(0.03) benign(0.109) TCGA-C5-A2LV-01 1 40362359 40362359 C A MYCL 3'UTR 0.18 TCGA-C5-A2LV-01 1 50574808 50574808 C A ELAVL4 Intron 0.22 TCGA-C5-A2LV-01 1 83912348 83912348 C T RP11-413G15.1 RNA 0.12 TCGA-C5-A2LV-01 1 93619737 93619737 T C TMED5 3'UTR 0.65 TCGA-C5-A2LV-01 20 14307372 14307372 G A FLRT3 Missense_Mutation p.R261W 0.11 deleterious(0.01) possibly_damaging(0.788) TCGA-C5-A2LV-01 20 31830356 31830356 T C BPIFA1 3'UTR 0.37 TCGA-C5-A2LV-01 20 34236918 34236918 C T RBM12 3'UTR 0.36 TCGA-C5-A2LV-01 20 44236719 44236719 C T WFDC9 3'UTR 0.21 TCGA-C5-A2LV-01 20 58533625 58533625 G A CDH26 5'UTR 0.13 TCGA-C5-A2LV-01 22 37913996 37913996 G A CARD10 Missense_Mutation p.R119C 0.35 deleterious(0) probably_damaging(0.999) TCGA-C5-A2LV-01 22 46774516 46774516 G A CELSR1 Missense_Mutation p.A2452V 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A2LV-01 22 47069640 47069640 G A GRAMD4 Missense_Mutation p.R438H 0.40 deleterious(0.01) probably_damaging(0.931) TCGA-C5-A2LV-01 2 165997412 165997412 C G SCN3A Missense_Mutation p.E590Q 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-C5-A2LV-01 2 202340421 202340421 C T STRADB Silent p.A168A 0.17 TCGA-C5-A2LV-01 2 207513619 207513619 C T DYTN 3'Flank 0.33 TCGA-C5-A2LV-01 2 210640752 210640752 C G UNC80 Nonsense_Mutation p.S94* 0.57 TCGA-C5-A2LV-01 3 10264464 10264464 C T IRAK2 Silent p.F386F 0.40 TCGA-C5-A2LV-01 3 140785302 140785302 C T SPSB4 Missense_Mutation p.T119M 0.36 deleterious(0) probably_damaging(0.994) TCGA-C5-A2LV-01 3 142841114 142841114 G A CHST2 Missense_Mutation p.A486T 0.27 tolerated(0.51) possibly_damaging(0.622) TCGA-C5-A2LV-01 3 164764706 164764706 C T SI Missense_Mutation p.D604N 0.14 deleterious(0.02) probably_damaging(0.912) TCGA-C5-A2LV-01 3 58487187 58487187 C T KCTD6 Missense_Mutation p.P181L 0.38 deleterious(0.02) benign(0.117) TCGA-C5-A2LV-01 3 9406783 9406783 C T THUMPD3 Missense_Mutation p.L11F 0.30 tolerated_low_confidence(0.14) benign(0.014) TCGA-C5-A2LV-01 4 100434203 100434203 C T C4orf17 5'UTR 0.31 TCGA-C5-A2LV-01 4 113568851 113568851 G A LARP7 Missense_Mutation p.E342K 0.22 tolerated(0.09) benign(0.281) TCGA-C5-A2LV-01 4 119951182 119951182 G C SYNPO2 Missense_Mutation p.E418Q 0.44 deleterious(0.04) benign(0.167) TCGA-C5-A2LV-01 4 176555669 176555669 A T GPM6A 3'UTR 0.31 TCGA-C5-A2LV-01 4 185309732 185309732 G A IRF2 3'UTR 0.21 TCGA-C5-A2LV-01 4 41622545 41622545 G A LIMCH1 Intron 0.69 TCGA-C5-A2LV-01 5 131630422 131630422 C T SLC22A4 Missense_Mutation p.S38L 0.57 tolerated(0.13) possibly_damaging(0.459) TCGA-C5-A2LV-01 5 140594928 140594928 A G PCDHB13 Silent p.R411R 0.29 TCGA-C5-A2LV-01 5 145246177 145246178 - AGA GRXCR2 In_Frame_Ins p.E150_E151insS 0.33 TCGA-C5-A2LV-01 5 32126061 32126061 A C GOLPH3 3'UTR 0.33 TCGA-C5-A2LV-01 5 61681687 61681687 G A KIF2A 3'Flank 0.20 TCGA-C5-A2LV-01 6 108192759 108192759 G T SEC63 3'UTR 0.18 TCGA-C5-A2LV-01 6 131915324 131915324 C T MED23 Silent p.L1049L 0.34 TCGA-C5-A2LV-01 6 30866961 30866961 C T DDR1 Missense_Mutation p.P883L 0.66 deleterious(0) probably_damaging(0.983) TCGA-C5-A2LV-01 6 39853968 39853968 G T DAAM2 Intron 0.22 TCGA-C5-A2LV-01 6 65655768 65655768 A C EYS Missense_Mutation p.F767V 0.38 deleterious(0.04) possibly_damaging(0.859) TCGA-C5-A2LV-01 7 100253446 100253446 C T ACTL6B Missense_Mutation p.A28T 0.34 deleterious(0) probably_damaging(0.984) TCGA-C5-A2LV-01 7 145813921 145813921 G T CNTNAP2 5'UTR 0.32 TCGA-C5-A2LV-01 7 149500124 149500124 G T SSPO RNA 0.33 TCGA-C5-A2LV-01 7 4051855 4051856 GA - SDK1 Frame_Shift_Del p.G803Vfs*39 0.14 TCGA-C5-A2LV-01 7 6205417 6205417 C T CYTH3 Missense_Mutation p.R283H 0.34 deleterious(0.01) benign(0.347) TCGA-C5-A2LV-01 7 65338485 65338485 G A VKORC1L1 Missense_Mutation p.D43N 0.30 tolerated(0.26) benign(0.094) TCGA-C5-A2LV-01 7 82586136 82586136 G T PCLO Missense_Mutation p.P1378Q 0.58 unknown(0) TCGA-C5-A2LV-01 7 86274149 86274149 G A GRM3 5'UTR 0.11 TCGA-C5-A2LV-01 8 12941426 12941426 T C DLC1 3'UTR 0.34 TCGA-C5-A2LV-01 8 42692834 42692834 C A THAP1 3'UTR 0.58 TCGA-C5-A2LV-01 8 53586464 53586464 G A RB1CC1 Nonsense_Mutation p.Q315* 0.64 TCGA-C5-A2LV-01 8 89050748 89050748 A - MMP16 3'UTR 0.24 TCGA-C5-A2LV-01 9 117164911 117164911 G A DFNB31 3'UTR 0.17 TCGA-C5-A2LV-01 9 126144639 126144639 C T DENND1A Missense_Mutation p.R701Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-C5-A2LV-01 9 26920335 26920335 C T PLAA Missense_Mutation p.E363K 0.20 tolerated(0.09) benign(0.178) TCGA-C5-A2LV-01 9 37740127 37740127 C T FRMPD1 Silent p.C534C 0.15 TCGA-C5-A2LV-01 X 119565211 119565211 G C LAMP2 Intron 0.25 TCGA-C5-A2LV-01 X 65474909 65474909 G C HEPH Missense_Mutation p.E920Q 0.17 deleterious(0.04) probably_damaging(0.917) TCGA-C5-A2LV-01 X 71358994 71358994 G A NHSL2 Silent p.E532E 0.21 TCGA-C5-A2LX-01 10 102089876 102089876 G T PKD2L1 5'UTR 0.37 TCGA-C5-A2LX-01 10 104154243 104154243 C T NFKB2 5'Flank 0.28 TCGA-C5-A2LX-01 10 122349054 122349054 T A PPAPDC1A 3'UTR 0.43 TCGA-C5-A2LX-01 10 131671814 131671814 A G EBF3 Missense_Mutation p.V228A 0.30 deleterious(0) benign(0.139) TCGA-C5-A2LX-01 10 16858969 16858969 C T RSU1 Intron 0.32 TCGA-C5-A2LX-01 10 17949643 17949643 A T MRC1L1 Missense_Mutation p.H1336L 0.27 benign(0.001) TCGA-C5-A2LX-01 10 26500868 26500868 C A MYO3A Silent p.R1609R 0.20 TCGA-C5-A2LX-01 10 30918616 30918616 T C LYZL2 Missense_Mutation p.S7G 0.16 tolerated_low_confidence(0.88) benign(0.294) TCGA-C5-A2LX-01 10 43655971 43655972 - TCATCTCA CSGALNACT2 Frame_Shift_Ins p.T306Ifs*20 0.18 TCGA-C5-A2LX-01 10 49628280 49628280 C T MAPK8 Missense_Mutation p.T178M 0.48 deleterious(0.01) possibly_damaging(0.834) TCGA-C5-A2LX-01 10 63661474 63661474 G T ARID5B Missense_Mutation p.E2D 0.22 tolerated(0.06) possibly_damaging(0.827) TCGA-C5-A2LX-01 10 63957838 63957838 C T RTKN2 Silent p.Q553Q 0.29 TCGA-C5-A2LX-01 10 74103158 74103158 C T DNAJB12 Silent p.K175K 0.32 TCGA-C5-A2LX-01 10 75003068 75003068 C T DNAJC9 3'UTR 0.36 TCGA-C5-A2LX-01 10 75391541 75391541 G A MYOZ1 3'UTR 0.11 TCGA-C5-A2LX-01 10 8111433 8111433 C A GATA3 Intron 0.46 TCGA-C5-A2LX-01 10 96741062 96741062 C T CYP2C9 Missense_Mutation p.L362F 0.21 deleterious(0.05) benign(0.032) TCGA-C5-A2LX-01 11 1017781 1017781 T A MUC6 Missense_Mutation p.T1674S 0.05 unknown(0) TCGA-C5-A2LX-01 11 125280125 125280125 G C PKNOX2 Missense_Mutation p.G208R 0.50 tolerated(0.16) benign(0.112) TCGA-C5-A2LX-01 11 34916565 34916565 C G APIP Missense_Mutation p.L50F 0.22 deleterious(0) possibly_damaging(0.515) TCGA-C5-A2LX-01 11 36600357 36600357 T A RAG1 3'UTR 0.19 TCGA-C5-A2LX-01 11 63683996 63683996 C G RCOR2 5'UTR 0.73 TCGA-C5-A2LX-01 11 640646 640646 C T DRD4 3'UTR 0.29 TCGA-C5-A2LX-01 11 6503558 6503558 G A TIMM10B 3'UTR 0.18 TCGA-C5-A2LX-01 11 66026210 66026210 G T KLC2 Nonsense_Mutation p.E49* 0.65 TCGA-C5-A2LX-01 11 66062524 66062524 G A TMEM151A Silent p.S269S 0.42 TCGA-C5-A2LX-01 11 71807777 71807777 G A LRTOMT Intron 0.23 TCGA-C5-A2LX-01 11 75727906 75727906 C G UVRAG Missense_Mutation p.L370V 0.46 deleterious(0.05) probably_damaging(0.995) TCGA-C5-A2LX-01 11 75905741 75905741 C T WNT11 Missense_Mutation p.G156E 0.44 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 11 7982843 7982843 C T NLRP10 Missense_Mutation p.V106M 0.27 tolerated(0.06) benign(0.125) TCGA-C5-A2LX-01 11 82876722 82876722 T A PCF11 Silent p.I261I 0.21 TCGA-C5-A2LX-01 11 85435387 85435387 C T SYTL2 Missense_Mutation p.E705K 0.24 tolerated(0.25) benign(0.013) TCGA-C5-A2LX-01 12 100787177 100787177 G C SLC17A8 Silent p.S168S 0.07 TCGA-C5-A2LX-01 12 10782274 10782274 C T STYK1 Splice_Site p.X151_splice 0.54 TCGA-C5-A2LX-01 12 111951322 111951322 T A ATXN2 Missense_Mutation p.K626M 0.09 probably_damaging(0.999) TCGA-C5-A2LX-01 12 123433238 123433238 G A ABCB9 Missense_Mutation p.S329F 0.54 deleterious(0) probably_damaging(0.992) TCGA-C5-A2LX-01 12 124799367 124799367 G A FAM101A 3'UTR 0.13 TCGA-C5-A2LX-01 12 125298946 125298946 C A SCARB1 Silent p.A144A 0.19 TCGA-C5-A2LX-01 12 126947287 126947287 C T RP5-944M2.3 RNA 0.14 TCGA-C5-A2LX-01 12 16703503 16703503 C A LMO3 3'Flank 0.33 TCGA-C5-A2LX-01 12 33592654 33592654 A G SYT10 5'UTR 0.29 TCGA-C5-A2LX-01 12 3407262 3407262 A G RP5-1063M23.1 RNA 0.18 TCGA-C5-A2LX-01 12 45568252 45568252 T A PLEKHA8P1 RNA 0.12 TCGA-C5-A2LX-01 12 475192 475192 G C KDM5A Missense_Mutation p.L149V 0.20 deleterious(0.04) benign(0.052) TCGA-C5-A2LX-01 12 53896808 53896808 C G TARBP2 Intron 0.28 TCGA-C5-A2LX-01 12 57864774 57864774 C G GLI1 Missense_Mutation p.L751V 0.32 tolerated(0.06) benign(0.004) TCGA-C5-A2LX-01 12 58018721 58018721 C T SLC26A10 Missense_Mutation p.R434C 0.19 deleterious(0) probably_damaging(0.976) TCGA-C5-A2LX-01 12 6439073 6439073 G A TNFRSF1A Missense_Mutation p.P310S 0.10 tolerated(0.13) benign(0.045) TCGA-C5-A2LX-01 12 6464457 6464457 G T SCNN1A Missense_Mutation p.T434N 0.47 deleterious(0.02) probably_damaging(0.929) TCGA-C5-A2LX-01 12 6690234 6690234 C T CHD4 Missense_Mutation p.E1629K 0.52 tolerated(0.19) possibly_damaging(0.636) TCGA-C5-A2LX-01 12 73058227 73058227 T C TRHDE 3'UTR 0.23 TCGA-C5-A2LX-01 12 99128516 99128516 A T APAF1 3'Flank 0.13 TCGA-C5-A2LX-01 13 103422455 103422455 T C TEX30 Intron 0.33 TCGA-C5-A2LX-01 13 28608483 28608483 G T FLT3 Silent p.L553L 0.19 TCGA-C5-A2LX-01 13 29933442 29933442 G A MTUS2 Silent p.P993P 0.15 TCGA-C5-A2LX-01 13 39263748 39263748 C A FREM2 Missense_Mutation p.A756D 0.50 deleterious(0.01) benign(0.005) TCGA-C5-A2LX-01 13 43491701 43491701 C G EPSTI1 Missense_Mutation p.K250N 0.56 deleterious(0.01) possibly_damaging(0.843) TCGA-C5-A2LX-01 13 70274874 70274874 A T KLHL1 3'UTR 0.32 TCGA-C5-A2LX-01 14 38680774 38680774 C G SSTR1 3'UTR 0.32 TCGA-C5-A2LX-01 14 70989425 70989425 C T ADAM20 Missense_Mutation p.G734R 0.44 tolerated(0.53) benign(0.013) TCGA-C5-A2LX-01 15 101938677 101938677 C T PCSK6 Missense_Mutation p.D309N 0.07 deleterious(0) probably_damaging(0.998) TCGA-C5-A2LX-01 15 35814434 35814434 G A DPH6 Intron 0.41 TCGA-C5-A2LX-01 15 63557825 63557825 G T RAB8B 3'UTR 0.22 TCGA-C5-A2LX-01 15 70959510 70959510 C T UACA Silent p.Q1171Q 0.39 TCGA-C5-A2LX-01 15 72460080 72460080 G C GRAMD2 Missense_Mutation p.I123M 0.40 deleterious(0) probably_damaging(0.983) TCGA-C5-A2LX-01 15 72766720 72766720 C T ARIH1 5'UTR 0.18 TCGA-C5-A2LX-01 15 74166104 74166104 C A TBC1D21 Missense_Mutation p.F18L 0.19 tolerated_low_confidence(0.16) benign(0.015) TCGA-C5-A2LX-01 15 79066564 79066564 G A ADAMTS7 Missense_Mutation p.T652I 0.21 deleterious(0) probably_damaging(0.931) TCGA-C5-A2LX-01 16 11945434 11945434 G A RSL1D1 5'UTR 0.23 TCGA-C5-A2LX-01 16 1370260 1370260 G C UBE2I Missense_Mutation p.W103C 0.28 deleterious(0) probably_damaging(0.999) TCGA-C5-A2LX-01 16 15771771 15771771 G A NDE1 Silent p.L117L 0.05 TCGA-C5-A2LX-01 16 2126533 2126533 C G TSC2 Silent p.P928P 0.34 TCGA-C5-A2LX-01 16 2155420 2155420 G A PKD1 Missense_Mutation p.A2640V 0.18 benign(0.022) TCGA-C5-A2LX-01 16 2159882 2159882 G T PKD1 Silent p.T1762T 0.22 TCGA-C5-A2LX-01 16 22157643 22157643 G C VWA3A Missense_Mutation p.Q939H 0.29 deleterious(0.03) benign(0.02) TCGA-C5-A2LX-01 16 23498096 23498096 G C GGA2 Missense_Mutation p.L199V 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A2LX-01 16 27374370 27374370 C T IL4R Missense_Mutation p.A566V 0.44 deleterious(0.04) benign(0.104) TCGA-C5-A2LX-01 16 3406725 3406725 C T OR2C1 Missense_Mutation p.P262L 0.17 deleterious(0) possibly_damaging(0.834) TCGA-C5-A2LX-01 16 3786748 3786748 G C CREBBP Missense_Mutation p.P1488R 0.21 unknown(0) TCGA-C5-A2LX-01 16 4938172 4938172 C G PPL Missense_Mutation p.E815D 0.63 tolerated(0.09) probably_damaging(0.997) TCGA-C5-A2LX-01 16 56976054 56976054 G T HERPUD1 Missense_Mutation p.G306W 0.40 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 16 87738828 87738828 C T FLJ00104 5'UTR 0.30 TCGA-C5-A2LX-01 16 88930774 88930774 C G PABPN1L Missense_Mutation p.R223T 0.32 deleterious(0) possibly_damaging(0.893) TCGA-C5-A2LX-01 17 10426696 10426696 G C MYH2 Missense_Mutation p.Q1836E 0.31 deleterious(0.05) possibly_damaging(0.816) TCGA-C5-A2LX-01 17 11604523 11604523 G A DNAH9 Missense_Mutation p.E1704K 0.32 possibly_damaging(0.792) TCGA-C5-A2LX-01 17 1561948 1561948 C G PRPF8 Missense_Mutation p.G1750R 0.34 deleterious(0) possibly_damaging(0.628) TCGA-C5-A2LX-01 17 18052198 18052198 C T MYO15A Silent p.F2296F 0.66 TCGA-C5-A2LX-01 17 18158564 18158564 C T FLII Missense_Mutation p.R87Q 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-C5-A2LX-01 17 37885784 37885784 G T MIEN1 Silent p.V113V 0.67 TCGA-C5-A2LX-01 17 40716556 40716556 C T COASY Silent p.F365F 0.69 TCGA-C5-A2LX-01 17 41367829 41367829 G A TMEM106A Missense_Mutation p.V100M 0.22 deleterious(0.01) possibly_damaging(0.88) TCGA-C5-A2LX-01 17 4389539 4389539 G C SPNS3 Missense_Mutation p.R399T 0.52 tolerated(1) benign(0.036) TCGA-C5-A2LX-01 17 48916923 48916923 C T WFIKKN2 Missense_Mutation p.R92C 0.39 deleterious(0) probably_damaging(0.999) TCGA-C5-A2LX-01 17 61842130 61842130 G C CCDC47 Missense_Mutation p.S114R 0.15 tolerated(0.48) benign(0.039) TCGA-C5-A2LX-01 17 62859084 62859084 C T LRRC37A3 Missense_Mutation p.E1036K 0.21 deleterious(0) possibly_damaging(0.904) TCGA-C5-A2LX-01 17 80573806 80573806 C T WDR45B Missense_Mutation p.D342N 0.27 deleterious(0.04) benign(0.059) TCGA-C5-A2LX-01 18 61058250 61058250 C A VPS4B Missense_Mutation p.L431F 0.44 deleterious(0.03) benign(0.251) TCGA-C5-A2LX-01 18 65179061 65179061 C T DSEL Missense_Mutation p.D939N 0.29 tolerated(1) benign(0.02) TCGA-C5-A2LX-01 18 9886830 9886830 C G TXNDC2 Missense_Mutation p.D118E 0.17 deleterious(0.02) probably_damaging(0.912) TCGA-C5-A2LX-01 19 11687604 11687604 C T ACP5 Missense_Mutation p.V106M 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A2LX-01 19 1487842 1487842 C T PCSK4 Missense_Mutation p.D179N 0.31 deleterious(0) probably_damaging(0.997) TCGA-C5-A2LX-01 19 15222450 15222450 C G SYDE1 Silent p.L475L 0.16 TCGA-C5-A2LX-01 19 1623966 1623966 G A TCF3 Missense_Mutation p.P178L 0.19 deleterious(0) probably_damaging(0.954) TCGA-C5-A2LX-01 19 16757772 16757772 C T SMIM7 3'UTR 0.17 TCGA-C5-A2LX-01 19 16757848 16757848 C G SMIM7 3'UTR 0.15 TCGA-C5-A2LX-01 19 17086050 17086050 C T CPAMD8 Missense_Mutation p.D690N 0.52 tolerated(0.26) benign(0.013) TCGA-C5-A2LX-01 19 18322662 18322662 G A PDE4C Silent p.A566A 0.20 TCGA-C5-A2LX-01 19 20236011 20236011 G A CTC-260E6.2 RNA 0.21 TCGA-C5-A2LX-01 19 22817249 22817249 G A ZNF492 5'UTR 0.14 TCGA-C5-A2LX-01 19 2733271 2733271 C T SLC39A3 Silent p.A141A 0.45 TCGA-C5-A2LX-01 19 33168490 33168490 G A RGS9BP 3'UTR 0.35 TCGA-C5-A2LX-01 19 38780921 38780921 G T SPINT2 Splice_Site p.X185_splice 0.25 TCGA-C5-A2LX-01 19 436638 436638 C T SHC2 Missense_Mutation p.G256R 0.05 deleterious(0) probably_damaging(0.997) TCGA-C5-A2LX-01 19 44933212 44933212 G A ZNF229 Missense_Mutation p.R582W 0.23 tolerated(0.07) benign(0.017) TCGA-C5-A2LX-01 19 4512512 4512512 C A PLIN4 Missense_Mutation p.G473V 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-C5-A2LX-01 19 46280784 46280784 C T DMPK Missense_Mutation p.R326Q 0.13 tolerated(0.33) benign(0.005) TCGA-C5-A2LX-01 19 49225250 49225250 C T RASIP1 Nonsense_Mutation p.W851* 0.18 TCGA-C5-A2LX-01 19 4945950 4945950 C A UHRF1 RNA 0.52 TCGA-C5-A2LX-01 19 53454323 53454323 G C ZNF816 Silent p.G235G 0.11 TCGA-C5-A2LX-01 19 53761984 53761984 A G VN1R2 Missense_Mutation p.Y119C 0.20 tolerated(0.51) benign(0.035) TCGA-C5-A2LX-01 19 56614200 56614200 G T ZNF787 Intron 0.21 TCGA-C5-A2LX-01 19 58773793 58773793 C T ZNF544 Silent p.N607N 0.24 TCGA-C5-A2LX-01 19 58967304 58967304 C T ZNF324B Silent p.H331H 0.17 TCGA-C5-A2LX-01 19 6821677 6821677 G C VAV1 Missense_Mutation p.Q122H 0.18 deleterious(0.01) possibly_damaging(0.765) TCGA-C5-A2LX-01 19 7081464 7081464 C T ZNF557 Missense_Mutation p.P114L 0.26 tolerated(0.06) benign(0.007) TCGA-C5-A2LX-01 19 855661 855661 G C ELANE Missense_Mutation p.G155A 0.19 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 19 8587697 8587697 C A MYO1F Silent p.G957G 0.36 TCGA-C5-A2LX-01 1 101705712 101705712 G A S1PR1 3'UTR 0.45 TCGA-C5-A2LX-01 1 103488543 103488543 C T COL11A1 Missense_Mutation p.V334I 0.18 benign(0.396) TCGA-C5-A2LX-01 1 110172445 110172445 G A AMPD2 Silent p.L684L 0.24 TCGA-C5-A2LX-01 1 120345315 120345315 C G REG4 Intron 0.17 TCGA-C5-A2LX-01 1 120458453 120458453 G A NOTCH2 Missense_Mutation p.R2298W 0.22 deleterious(0.01) possibly_damaging(0.863) TCGA-C5-A2LX-01 1 145311874 145311874 G C NBPF10 Intron 0.26 TCGA-C5-A2LX-01 1 149857978 149857978 G C HIST2H2BE Missense_Mutation p.F71L 0.25 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-C5-A2LX-01 1 155180369 155180369 G C MTX1 Missense_Mutation p.G210A 0.05 tolerated(0.06) benign(0.081) TCGA-C5-A2LX-01 1 155851228 155851228 G A SYT11 Missense_Mutation p.E409K 0.26 tolerated(0.14) benign(0.328) TCGA-C5-A2LX-01 1 160385611 160385611 C T VANGL2 5'UTR 0.23 TCGA-C5-A2LX-01 1 161022560 161022560 G A ARHGAP30 Missense_Mutation p.S231L 0.11 tolerated(0.1) benign(0.005) TCGA-C5-A2LX-01 1 168510146 168510146 G A XCL2 3'UTR 0.16 TCGA-C5-A2LX-01 1 185094133 185094133 C G TRMT1L Missense_Mutation p.E568Q 0.14 tolerated(0.08) benign(0.215) TCGA-C5-A2LX-01 1 20672025 20672025 C T VWA5B1 Silent p.F901F 0.20 TCGA-C5-A2LX-01 1 20977197 20977197 G A PINK1 3'UTR 0.34 TCGA-C5-A2LX-01 1 226419838 226419838 A G LIN9 3'UTR 0.16 TCGA-C5-A2LX-01 1 238053227 238053227 C T ZP4 Missense_Mutation p.A114T 0.22 tolerated(0.16) benign(0.006) TCGA-C5-A2LX-01 1 23908066 23908066 T G MDS2 RNA 0.12 TCGA-C5-A2LX-01 1 240071327 240071327 T A CHRM3 Silent p.A192A 0.14 TCGA-C5-A2LX-01 1 240939083 240939083 T C RGS7 3'UTR 0.17 TCGA-C5-A2LX-01 1 248436275 248436275 G - OR2T33 Frame_Shift_Del p.P281Lfs*3 0.09 TCGA-C5-A2LX-01 1 248813752 248813752 A T OR2T27 Missense_Mutation p.V145E 0.19 deleterious(0) possibly_damaging(0.694) TCGA-C5-A2LX-01 1 249212358 249212358 G A PGBD2 Silent p.L525L 0.12 TCGA-C5-A2LX-01 1 28897738 28897738 A C TRNAU1AP Missense_Mutation p.N194T 0.15 tolerated(0.1) benign(0.017) TCGA-C5-A2LX-01 1 33147240 33147240 A - SYNC 3'UTR 0.22 TCGA-C5-A2LX-01 1 36646186 36646186 G C MAP7D1 3'UTR 0.05 TCGA-C5-A2LX-01 1 3746490 3746490 C A CEP104 Missense_Mutation p.M636I 0.38 deleterious(0.02) benign(0.135) TCGA-C5-A2LX-01 1 40225974 40225974 G C BMP8B 3'UTR 0.47 TCGA-C5-A2LX-01 1 43162918 43162918 G C YBX1 Missense_Mutation p.R242T 0.08 deleterious(0.01) probably_damaging(0.95) TCGA-C5-A2LX-01 1 44365321 44365321 C T ST3GAL3 Silent p.R291R 0.19 TCGA-C5-A2LX-01 1 44490015 44490015 C T SLC6A9 5'UTR 0.37 TCGA-C5-A2LX-01 1 48694890 48694890 A G SLC5A9 Intron 0.10 TCGA-C5-A2LX-01 1 53326437 53326437 A G ZYG11A Missense_Mutation p.E348G 0.21 deleterious(0) probably_damaging(0.917) TCGA-C5-A2LX-01 1 87597801 87597801 A G RP5-1052I5.2 Intron 0.16 TCGA-C5-A2LX-01 1 89730576 89730576 G A GBP5 Silent p.V314V 0.15 TCGA-C5-A2LX-01 1 94473823 94473823 C A ABCA4 Missense_Mutation p.D1956Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-C5-A2LX-01 1 99774344 99774344 T C LPPR4 3'UTR 0.24 TCGA-C5-A2LX-01 20 37357017 37357017 C T SLC32A1 Missense_Mutation p.A438V 0.23 tolerated(0.46) benign(0.011) TCGA-C5-A2LX-01 20 37536735 37536735 G C PPP1R16B Missense_Mutation p.E365Q 0.12 deleterious(0) possibly_damaging(0.894) TCGA-C5-A2LX-01 20 43944948 43944948 C T RBPJL Missense_Mutation p.P381L 0.47 deleterious(0.05) benign(0.227) TCGA-C5-A2LX-01 20 45618727 45618727 C T EYA2 Silent p.D26D 0.34 TCGA-C5-A2LX-01 20 6088188 6088188 C T FERMT1 Silent p.L280L 0.13 TCGA-C5-A2LX-01 20 61473217 61473217 C T TCFL5 3'UTR 0.24 TCGA-C5-A2LX-01 21 19770616 19770616 C G TMPRSS15 Missense_Mutation p.R59T 0.35 tolerated(0.29) benign(0.023) TCGA-C5-A2LX-01 21 33725190 33725190 C T URB1 Silent p.T814T 0.17 TCGA-C5-A2LX-01 21 35474793 35474793 C A SLC5A3 3'UTR 0.12 TCGA-C5-A2LX-01 22 24086870 24086870 G A ZNF70 Missense_Mutation p.S153L 0.07 deleterious(0.02) probably_damaging(0.992) TCGA-C5-A2LX-01 2 138413202 138413202 G A THSD7B Silent p.L1362L 0.37 TCGA-C5-A2LX-01 2 141298620 141298620 A G LRP1B Missense_Mutation p.C2479R 0.16 benign(0.384) TCGA-C5-A2LX-01 2 1426846 1426846 G A TPO Missense_Mutation p.V42I 0.36 tolerated(0.55) benign(0.001) TCGA-C5-A2LX-01 2 145155883 145155883 C T ZEB2 Silent p.R957R 0.10 TCGA-C5-A2LX-01 2 152727085 152727085 C T CACNB4 Missense_Mutation p.R220H 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A2LX-01 2 160980321 160980321 C T ITGB6 Silent p.A654A 0.30 TCGA-C5-A2LX-01 2 163003930 163003930 T G GCG Missense_Mutation p.S63R 0.16 deleterious(0.01) possibly_damaging(0.875) TCGA-C5-A2LX-01 2 175957797 175957797 G A ATF2 Nonsense_Mutation p.Q393* 0.19 TCGA-C5-A2LX-01 2 179456845 179456845 G T TTN Missense_Mutation p.A19929D 0.17 TCGA-C5-A2LX-01 2 179590695 179590695 G A TTN Missense_Mutation p.S6785L 0.17 TCGA-C5-A2LX-01 2 182360128 182360128 C T ITGA4 Missense_Mutation p.S457F 0.46 deleterious(0) probably_damaging(0.936) TCGA-C5-A2LX-01 2 202358491 202358491 C T ALS2CR11 Missense_Mutation p.G858D 0.34 tolerated(0.21) benign(0.03) TCGA-C5-A2LX-01 2 215812147 215812147 A T ABCA12 Missense_Mutation p.L2413Q 0.20 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 2 220402771 220402771 C T ASIC4 3'UTR 0.30 TCGA-C5-A2LX-01 2 220506409 220506409 G A SLC4A3 Missense_Mutation p.D1247N 0.12 deleterious(0.04) probably_damaging(0.969) TCGA-C5-A2LX-01 2 27873274 27873274 C T GPN1 3'UTR 0.11 TCGA-C5-A2LX-01 2 32475118 32475118 A G NLRC4 Silent p.C605C 0.22 TCGA-C5-A2LX-01 2 60686056 60686056 C A BCL11A 3'UTR 0.25 TCGA-C5-A2LX-01 2 71650144 71650144 T C ZNF638 Missense_Mutation p.L1167P 0.14 deleterious(0.04) benign(0.107) TCGA-C5-A2LX-01 2 74590169 74590169 G C DCTN1 Missense_Mutation p.Q1161E 0.50 tolerated(0.07) benign(0.028) TCGA-C5-A2LX-01 2 90212142 90212142 C A IGKV3D-11 Silent p.I78I 0.06 TCGA-C5-A2LX-01 2 97526526 97526526 C - SEMA4C Frame_Shift_Del p.G780Vfs*15 0.24 TCGA-C5-A2LX-01 3 100277259 100277259 C G TMEM45A Missense_Mutation p.F138L 0.17 deleterious(0.04) benign(0.133) TCGA-C5-A2LX-01 3 111923076 111923076 G A SLC9C1 Missense_Mutation p.R721C 0.10 deleterious(0.03) benign(0.176) TCGA-C5-A2LX-01 3 120998662 120998662 G C STXBP5L Missense_Mutation p.G657R 0.22 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 3 121132054 121132054 G A STXBP5L Missense_Mutation p.D1024N 0.14 tolerated(0.19) probably_damaging(1) TCGA-C5-A2LX-01 3 121340784 121340784 G A FBXO40 Missense_Mutation p.G170R 0.17 tolerated(0.15) benign(0.023) TCGA-C5-A2LX-01 3 121409639 121409639 C G GOLGB1 Missense_Mutation p.E2858Q 0.17 benign(0.031) TCGA-C5-A2LX-01 3 124950681 124950681 C G ZNF148 3'UTR 0.22 TCGA-C5-A2LX-01 3 126218960 126218960 C A UROC1 Nonsense_Mutation p.E455* 0.11 TCGA-C5-A2LX-01 3 151532064 151532064 A G AADAC Silent p.A38A 0.20 TCGA-C5-A2LX-01 3 153993652 153993652 G C DHX36 3'UTR 0.19 TCGA-C5-A2LX-01 3 155200357 155200357 G C PLCH1 Missense_Mutation p.S1161C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.738) TCGA-C5-A2LX-01 3 157318145 157318145 C G C3orf55 3'UTR 0.12 TCGA-C5-A2LX-01 3 169540456 169540456 C T LRRIQ4 Silent p.I249I 0.12 TCGA-C5-A2LX-01 3 169572602 169572602 C T LRRC31 Silent p.L330L 0.07 TCGA-C5-A2LX-01 3 179526207 179526207 C T PEX5L Silent p.V457V 0.11 TCGA-C5-A2LX-01 3 182987731 182987731 A T B3GNT5 Nonsense_Mutation p.R49* 0.15 TCGA-C5-A2LX-01 3 183995182 183995182 G A ECE2 Missense_Mutation p.D254N 0.30 tolerated(0.19) benign(0.002) TCGA-C5-A2LX-01 3 184001608 184001608 G C ECE2 Silent p.L402L 0.14 TCGA-C5-A2LX-01 3 195506314 195506314 G C MUC4 Missense_Mutation p.T4046S 0.24 benign(0.02) TCGA-C5-A2LX-01 3 52830650 52830650 A G ITIH3 Missense_Mutation p.T90A 0.30 deleterious(0) possibly_damaging(0.506) TCGA-C5-A2LX-01 3 97806600 97806600 C G OR5AC2 Missense_Mutation p.S195C 0.27 tolerated(0.06) probably_damaging(0.95) TCGA-C5-A2LX-01 4 106163885 106163885 G A TET2 Intron 0.09 TCGA-C5-A2LX-01 4 140427895 140427898 TTTG - SETD7 3'UTR 0.33 TCGA-C5-A2LX-01 4 153864376 153864376 C T FHDC1 Missense_Mutation p.S56F 0.28 deleterious(0) benign(0.36) TCGA-C5-A2LX-01 4 186111575 186111575 G C KIAA1430 Nonsense_Mutation p.S259* 0.31 TCGA-C5-A2LX-01 4 66280031 66280031 C T EPHA5 Missense_Mutation p.R553Q 0.32 tolerated(1) benign(0.003) TCGA-C5-A2LX-01 4 74313271 74313271 A T AFP Missense_Mutation p.Q312H 0.31 tolerated(0.44) benign(0.002) TCGA-C5-A2LX-01 4 77288709 77288709 C T CCDC158 Missense_Mutation p.R523H 0.24 tolerated(0.68) probably_damaging(0.993) TCGA-C5-A2LX-01 4 78650099 78650099 C T CNOT6L Silent p.E387E 0.30 TCGA-C5-A2LX-01 4 85605214 85605214 A G WDFY3 Missense_Mutation p.V3203A 0.25 tolerated(1) benign(0.001) TCGA-C5-A2LX-01 4 95199770 95199770 C G SMARCAD1 Missense_Mutation p.L728V 0.23 deleterious(0) probably_damaging(0.992) TCGA-C5-A2LX-01 5 100231456 100231456 G C ST8SIA4 Silent p.V49V 0.12 TCGA-C5-A2LX-01 5 11082931 11082931 G A CTNND2 Nonsense_Mutation p.R889* 0.18 TCGA-C5-A2LX-01 5 127595094 127595094 T A FBN2 3'UTR 0.13 TCGA-C5-A2LX-01 5 137292184 137292184 G A FAM13B Intron 0.32 TCGA-C5-A2LX-01 5 137846755 137846755 G A ETF1 Missense_Mutation p.L333F 0.11 tolerated(0.08) benign(0.169) TCGA-C5-A2LX-01 5 140202138 140202138 G T PCDHA5 Missense_Mutation p.V260F 0.30 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-C5-A2LX-01 5 140579960 140579960 C A PCDHB11 Missense_Mutation p.L205I 0.07 deleterious_low_confidence(0.03) benign(0.003) TCGA-C5-A2LX-01 5 140793061 140793061 G A PCDHGA10 Missense_Mutation p.V107M 0.31 deleterious_low_confidence(0.02) benign(0.123) TCGA-C5-A2LX-01 5 140963701 140963701 G A DIAPH1 Missense_Mutation p.T131I 0.35 unknown(0) TCGA-C5-A2LX-01 5 141033462 141033462 G C ARAP3 3'UTR 0.11 TCGA-C5-A2LX-01 5 146770924 146770924 A T DPYSL3 3'UTR 0.09 TCGA-C5-A2LX-01 5 149375702 149375702 C T TIGD6 Missense_Mutation p.M70I 0.50 tolerated(0.16) benign(0.003) TCGA-C5-A2LX-01 5 16703225 16703225 C T MYO10 Silent p.Q773Q 0.54 TCGA-C5-A2LX-01 5 173384005 173384005 G C CPEB4 3'UTR 0.22 TCGA-C5-A2LX-01 5 179545796 179545796 G A RASGEF1C Silent p.F326F 0.24 TCGA-C5-A2LX-01 5 37017248 37017248 A T NIPBL Missense_Mutation p.E1635V 0.21 deleterious(0) benign(0.013) TCGA-C5-A2LX-01 5 52344281 52344281 C T ITGA2 Missense_Mutation p.S159L 0.43 tolerated(1) benign(0) TCGA-C5-A2LX-01 5 80256591 80256591 G A RASGRF2 Missense_Mutation p.A12T 0.21 tolerated_low_confidence(0.08) benign(0.043) TCGA-C5-A2LX-01 5 82817833 82817833 C T VCAN Silent p.I1236I 0.43 TCGA-C5-A2LX-01 5 89979428 89979428 C T GPR98 Missense_Mutation p.S1897F 0.15 probably_damaging(0.962) TCGA-C5-A2LX-01 5 90052925 90052925 G T GPR98 Missense_Mutation p.G3963C 0.20 probably_damaging(0.999) TCGA-C5-A2LX-01 6 111208743 111208743 G C AMD1 Missense_Mutation p.C49S 0.18 deleterious(0.01) possibly_damaging(0.668) TCGA-C5-A2LX-01 6 147061664 147061664 T C ADGB Silent p.I986I 0.19 TCGA-C5-A2LX-01 6 16301038 16301038 G A ATXN1 3'UTR 0.63 TCGA-C5-A2LX-01 6 24145979 24145979 A T NRSN1 Silent p.A131A 0.15 TCGA-C5-A2LX-01 6 28350143 28350143 G A ZSCAN12 3'UTR 0.27 TCGA-C5-A2LX-01 6 32906462 32906462 T A HLA-DMB Silent p.T112T 0.22 TCGA-C5-A2LX-01 6 37284604 37284604 C T TBC1D22B Nonsense_Mutation p.Q431* 0.65 TCGA-C5-A2LX-01 6 39881113 39881113 C G MOCS1 Missense_Mutation p.L235F 0.17 tolerated(0.21) benign(0.16) TCGA-C5-A2LX-01 6 41184878 41184878 G A TREML3P RNA 0.61 TCGA-C5-A2LX-01 6 43299581 43299581 G T ZNF318 3'Flank 0.22 TCGA-C5-A2LX-01 6 56323951 56323951 G A DST Missense_Mutation p.S5123F 0.62 probably_damaging(0.999) TCGA-C5-A2LX-01 6 79607603 79607603 G A IRAK1BP1 Missense_Mutation p.E147K 0.11 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 6 84317460 84317460 G A SNAP91 Missense_Mutation p.P327L 0.59 deleterious(0.01) unknown(0) TCGA-C5-A2LX-01 6 86176858 86176858 G A NT5E Silent p.L140L 0.14 TCGA-C5-A2LX-01 6 89808550 89808550 C T SRSF12 Missense_Mutation p.G178E 0.67 tolerated(0.06) probably_damaging(0.972) TCGA-C5-A2LX-01 6 91225676 91225676 C T MAP3K7 3'UTR 0.26 TCGA-C5-A2LX-01 6 99848109 99848109 C G PNISR 3'UTR 0.05 TCGA-C5-A2LX-01 7 114178435 114178435 T G FOXP2 Intron 0.23 TCGA-C5-A2LX-01 7 123264786 123264786 G A ASB15 Silent p.L205L 0.33 TCGA-C5-A2LX-01 7 31692144 31692144 C T CCDC129 Missense_Mutation p.L972F 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-C5-A2LX-01 7 38468041 38468041 A G AMPH Intron 0.20 TCGA-C5-A2LX-01 7 40117664 40117664 C G CDK13 Missense_Mutation p.F947L 0.04 deleterious(0) possibly_damaging(0.621) TCGA-C5-A2LX-01 7 48634405 48634405 C A ABCA13 Missense_Mutation p.H4914N 0.36 probably_damaging(0.998) TCGA-C5-A2LX-01 7 50596916 50596916 G A DDC Missense_Mutation p.S187L 0.33 deleterious(0.01) benign(0.061) TCGA-C5-A2LX-01 7 74203029 74203029 G A NCF1 Silent p.Q344Q 0.29 TCGA-C5-A2LX-01 7 86825918 86825918 G A TMEM243 3'UTR 0.40 TCGA-C5-A2LX-01 7 99747167 99747167 G C LAMTOR4 Missense_Mutation p.G17R 0.30 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 8 11696000 11696000 G A FDFT1 Missense_Mutation p.R379Q 0.19 tolerated(0.05) benign(0.023) TCGA-C5-A2LX-01 8 117875499 117875499 C T RAD21 Splice_Site p.X49_splice 0.23 TCGA-C5-A2LX-01 8 121583458 121583458 C T SNTB1 Intron 0.16 TCGA-C5-A2LX-01 8 124525579 124525579 G C FBXO32 Silent p.L170L 0.05 TCGA-C5-A2LX-01 8 140631202 140631202 G A KCNK9 Missense_Mutation p.R142C 0.24 deleterious(0.03) benign(0.033) TCGA-C5-A2LX-01 8 142489417 142489417 G A MROH5 3'UTR 0.07 TCGA-C5-A2LX-01 8 22398215 22398215 G A PPP3CC Missense_Mutation p.R489Q 0.39 deleterious(0.04) possibly_damaging(0.782) TCGA-C5-A2LX-01 8 22478974 22478974 G A BIN3 Silent p.L241L 0.49 TCGA-C5-A2LX-01 8 24774881 24774881 G C NEFM Missense_Mutation p.E505Q 0.24 tolerated(0.25) unknown(0) TCGA-C5-A2LX-01 8 32505252 32505252 C T NRG1 Intron 0.09 TCGA-C5-A2LX-01 9 104133518 104133518 C G BAAT Missense_Mutation p.E57Q 0.25 tolerated(0.1) possibly_damaging(0.808) TCGA-C5-A2LX-01 9 130493590 130493590 C G TTC16 Nonsense_Mutation p.S843* 0.62 TCGA-C5-A2LX-01 9 131186429 131186429 G C CERCAM Missense_Mutation p.D147H 0.38 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 9 13192225 13192225 C T MPDZ Missense_Mutation p.E625K 0.12 tolerated(0.91) benign(0.002) TCGA-C5-A2LX-01 9 133510048 133510053 GCACAG - FUBP3 Splice_Site p.X504_splice 0.22 TCGA-C5-A2LX-01 9 135374143 135374143 G C C9orf171 Missense_Mutation p.G122A 0.34 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 9 136219385 136219385 C G SURF1 Missense_Mutation p.E223Q 0.07 tolerated(0.09) benign(0.178) TCGA-C5-A2LX-01 9 21304814 21304814 G A IFNA5 Nonsense_Mutation p.Q148* 0.18 TCGA-C5-A2LX-01 9 34263154 34263154 C G KIF24 Missense_Mutation p.R487P 0.50 deleterious(0) probably_damaging(0.998) TCGA-C5-A2LX-01 9 35078671 35078671 G C FANCG Missense_Mutation p.L80V 0.21 deleterious(0.02) possibly_damaging(0.724) TCGA-C5-A2LX-01 9 79259658 79259658 C A PRUNE2 Nonsense_Mutation p.G2909* 0.29 TCGA-C5-A2LX-01 9 8465527 8465527 T C PTPRD Missense_Mutation p.Q1218R 0.19 tolerated(0.49) probably_damaging(0.956) TCGA-C5-A2LX-01 9 894052 894052 A T DMRT1 Missense_Mutation p.N227Y 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-C5-A2LX-01 X 105277520 105277520 C A SERPINA7 Missense_Mutation p.G407W 0.73 deleterious(0) probably_damaging(1) TCGA-C5-A2LX-01 X 105970452 105970452 G A RNF128 Silent p.T103T 0.21 TCGA-C5-A2LX-01 X 12940306 12940306 C T TLR8 3'UTR 0.54 TCGA-C5-A2LX-01 X 152981118 152981118 C T BCAP31 Missense_Mutation p.D141N 0.68 tolerated(0.16) probably_damaging(0.995) TCGA-C5-A2LX-01 X 36402963 36402963 G A CXorf30 Missense_Mutation p.V582M 0.36 tolerated(0.17) benign(0.013) TCGA-C5-A2LX-01 X 48046155 48046155 C T SSX5 3'UTR 0.26 TCGA-C5-A2LX-01 X 73045954 73045954 G T XIST RNA 0.29 TCGA-C5-A2LY-01 10 23607690 23607690 G A C10orf67 3'UTR 0.33 TCGA-C5-A2LY-01 10 49367196 49367196 A G FRMPD2 Intron 0.12 TCGA-C5-A2LY-01 10 60028981 60028981 G A CISD1 5'UTR 0.27 TCGA-C5-A2LY-01 10 60148521 60148521 C T TFAM Missense_Mutation p.S128F 0.17 deleterious(0.01) probably_damaging(0.925) TCGA-C5-A2LY-01 10 61564240 61564240 C T CCDC6 Missense_Mutation p.R348H 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-C5-A2LY-01 11 100806949 100806949 G C ARHGAP42 Missense_Mutation p.E240Q 0.03 deleterious(0.05) benign(0.011) TCGA-C5-A2LY-01 11 102573543 102573543 G A MMP27 Missense_Mutation p.P187L 0.05 tolerated(0.48) benign(0.002) TCGA-C5-A2LY-01 11 118965921 118965921 C T H2AFX Missense_Mutation p.E62K 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-C5-A2LY-01 11 13397219 13397219 C G ARNTL Missense_Mutation p.S411C 0.33 deleterious(0.01) probably_damaging(0.944) TCGA-C5-A2LY-01 11 13397253 13397253 C G ARNTL Missense_Mutation p.F422L 0.38 deleterious(0) probably_damaging(1) TCGA-C5-A2LY-01 11 33361070 33361070 C G HIPK3 Missense_Mutation p.H535D 0.31 deleterious(0) probably_damaging(0.93) TCGA-C5-A2LY-01 11 63487089 63487089 C T RTN3 Missense_Mutation p.S372L 0.17 deleterious(0) possibly_damaging(0.848) TCGA-C5-A2LY-01 11 83177774 83177774 T G DLG2 Missense_Mutation p.K902N 0.21 deleterious(0) probably_damaging(0.995) TCGA-C5-A2LY-01 12 100433471 100433471 C T UHRF1BP1L Missense_Mutation p.R1393H 0.28 tolerated(0.18) benign(0) TCGA-C5-A2LY-01 12 29493733 29493733 T C ERGIC2 3'UTR 0.31 TCGA-C5-A2LY-01 12 52574335 52574335 C G KRT80 Missense_Mutation p.E210Q 0.33 tolerated(0.88) benign(0) TCGA-C5-A2LY-01 12 56182900 56182900 C T SARNP Missense_Mutation p.A154T 0.26 deleterious(0) benign(0.247) TCGA-C5-A2LY-01 12 57057477 57057477 G C PTGES3 3'UTR 0.33 TCGA-C5-A2LY-01 12 62888907 62888907 C T MON2 Missense_Mutation p.H139Y 0.33 deleterious(0.01) probably_damaging(0.947) TCGA-C5-A2LY-01 12 65110474 65110474 C G GNS 3'UTR 0.27 TCGA-C5-A2LY-01 12 69207338 69207338 G A MDM2 Missense_Mutation p.R35K 0.29 tolerated(0.22) possibly_damaging(0.841) TCGA-C5-A2LY-01 12 86383291 86383291 C A MGAT4C Nonsense_Mutation p.E12* 0.36 TCGA-C5-A2LY-01 13 113740465 113740465 G A MCF2L Missense_Mutation p.E759K 0.08 deleterious(0.03) benign(0.027) TCGA-C5-A2LY-01 13 49055049 49055049 G C RB1 3'UTR 0.25 TCGA-C5-A2LY-01 14 103195887 103195887 A C RCOR1 3'UTR 0.36 TCGA-C5-A2LY-01 14 21216200 21216200 C G EDDM3A 3'UTR 0.35 TCGA-C5-A2LY-01 14 24619482 24619482 G C RNF31 Missense_Mutation p.G341A 0.35 tolerated(0.69) benign(0.002) TCGA-C5-A2LY-01 14 24619550 24619550 G T RNF31 Nonsense_Mutation p.E364* 0.44 TCGA-C5-A2LY-01 14 50360844 50360844 G C ARF6 Missense_Mutation p.M130I 0.28 deleterious_low_confidence(0.03) benign(0.006) TCGA-C5-A2LY-01 14 51382589 51382589 G C PYGL Missense_Mutation p.P398R 0.07 deleterious(0) probably_damaging(1) TCGA-C5-A2LY-01 15 28459890 28459890 G A HERC2 Missense_Mutation p.A2090V 0.26 benign(0.002) TCGA-C5-A2LY-01 15 48791233 48791233 C T FBN1 Missense_Mutation p.E706K 0.30 probably_damaging(0.998) TCGA-C5-A2LY-01 15 90280856 90280856 G A WDR93 Missense_Mutation p.R554H 0.28 tolerated(0.09) benign(0.424) TCGA-C5-A2LY-01 16 1270609 1270609 C T CACNA1H Missense_Mutation p.T2226M 0.36 tolerated_low_confidence(0.09) benign(0.165) TCGA-C5-A2LY-01 16 1415544 1415544 C G UNKL 3'UTR 0.28 TCGA-C5-A2LY-01 16 16313762 16313762 C T ABCC6 Missense_Mutation p.A88T 0.13 deleterious(0.04) benign(0.003) TCGA-C5-A2LY-01 16 18586125 18586125 G A RP11-457I16.2 5'Flank 0.27 TCGA-C5-A2LY-01 16 1872878 1872878 C T HAGH Silent p.V79V 0.33 TCGA-C5-A2LY-01 16 3074170 3074170 C T THOC6 5'UTR 0.26 TCGA-C5-A2LY-01 16 601308 601308 C G CAPN15 Silent p.L691L 0.32 TCGA-C5-A2LY-01 16 67233124 67233124 C T ELMO3 Silent p.L18L 0.36 TCGA-C5-A2LY-01 16 67981670 67981670 C G SLC12A4 Missense_Mutation p.M625I 0.39 deleterious(0.03) possibly_damaging(0.669) TCGA-C5-A2LY-01 17 2282778 2282778 C T SGSM2 Silent p.L1040L 0.33 TCGA-C5-A2LY-01 17 40453449 40453449 G A STAT5A Silent p.L382L 0.27 TCGA-C5-A2LY-01 17 41179197 41179197 C T RND2 Intron 0.26 TCGA-C5-A2LY-01 17 4925476 4925476 G A KIF1C Silent p.P700P 0.30 TCGA-C5-A2LY-01 17 55943864 55943864 C A CUEDC1 Nonsense_Mutation p.E379* 0.35 TCGA-C5-A2LY-01 17 61574336 61574336 G A ACE Silent p.T1227T 0.24 TCGA-C5-A2LY-01 17 73845748 73845749 CA - WBP2 Nonsense_Mutation p.C80* 0.23 TCGA-C5-A2LY-01 17 74771101 74771101 G C MFSD11 Silent p.L299L 0.04 TCGA-C5-A2LY-01 17 7637856 7637856 G A DNAH2 Missense_Mutation p.E270K 0.35 benign(0.344) TCGA-C5-A2LY-01 17 80274808 80274808 G A CD7 Silent p.V44V 0.33 TCGA-C5-A2LY-01 18 19080547 19080547 G A GREB1L Missense_Mutation p.R1339H 0.29 deleterious(0) probably_damaging(1) TCGA-C5-A2LY-01 18 33290339 33290339 C T GALNT1 3'UTR 0.18 TCGA-C5-A2LY-01 19 13006876 13006876 G A GCDH Silent p.E192E 0.62 TCGA-C5-A2LY-01 19 14034616 14034616 C T CC2D1A Silent p.S644S 0.05 TCGA-C5-A2LY-01 19 14581422 14581422 C T PKN1 Silent p.F830F 0.78 TCGA-C5-A2LY-01 19 18965421 18965421 G C UPF1 Missense_Mutation p.E390Q 0.17 deleterious(0.01) possibly_damaging(0.457) TCGA-C5-A2LY-01 19 36340152 36340152 G C NPHS1 Missense_Mutation p.L276V 0.23 deleterious(0) probably_damaging(1) TCGA-C5-A2LY-01 19 49643240 49643240 C T PPFIA3 Missense_Mutation p.H755Y 0.25 deleterious(0.03) probably_damaging(0.993) TCGA-C5-A2LY-01 19 51132693 51132693 C T SYT3 Missense_Mutation p.R380H 0.20 deleterious(0) probably_damaging(0.999) TCGA-C5-A2LY-01 19 53912155 53912155 C T ZNF765 Silent p.F449F 0.24 TCGA-C5-A2LY-01 19 54648024 54648024 G C CNOT3 Missense_Mutation p.E147Q 0.20 deleterious(0) probably_damaging(0.996) TCGA-C5-A2LY-01 19 55665462 55665462 C T TNNI3 Missense_Mutation p.R162Q 0.33 tolerated(0.06) benign(0.095) TCGA-C5-A2LY-01 19 8536269 8536269 C T HNRNPM Missense_Mutation p.H319Y 0.36 deleterious(0.03) possibly_damaging(0.701) TCGA-C5-A2LY-01 19 9063893 9063893 G C MUC16 Silent p.V7851V 0.30 TCGA-C5-A2LY-01 1 120930077 120930077 C T FCGR1B Missense_Mutation p.R175H 0.28 tolerated(0.13) benign(0.283) TCGA-C5-A2LY-01 1 149783657 149783657 G A HIST2H2BF Silent p.I74I 0.22 TCGA-C5-A2LY-01 1 153964603 153964603 C G RPS27 3'UTR 0.35 TCGA-C5-A2LY-01 1 160261149 160261149 C T COPA Silent p.G1141G 0.19 TCGA-C5-A2LY-01 1 181058186 181058186 G A IER5 Missense_Mutation p.D50N 0.48 deleterious(0) probably_damaging(0.956) TCGA-C5-A2LY-01 1 181059419 181059419 C T IER5 3'UTR 0.17 TCGA-C5-A2LY-01 1 236141076 236141076 C T NID1 3'UTR 0.14 TCGA-C5-A2LY-01 1 248756320 248756320 G A OR2T10 Silent p.L250L 0.24 TCGA-C5-A2LY-01 1 31404960 31404960 C T PUM1 3'Flank 0.34 TCGA-C5-A2LY-01 1 35331044 35331044 C G DLGAP3 3'UTR 0.29 TCGA-C5-A2LY-01 1 38453469 38453469 C T SF3A3 Missense_Mutation p.D62N 0.23 tolerated(0.1) benign(0.001) TCGA-C5-A2LY-01 1 40928893 40928893 C G ZFP69B Missense_Mutation p.H413D 0.32 deleterious(0.03) probably_damaging(0.971) TCGA-C5-A2LY-01 1 47735335 47735335 C T STIL Missense_Mutation p.E863K 0.33 tolerated(0.33) possibly_damaging(0.487) TCGA-C5-A2LY-01 1 74670431 74670431 G A FPGT Missense_Mutation p.E234K 0.17 tolerated(0.08) possibly_damaging(0.896) TCGA-C5-A2LY-01 20 30448987 30448987 A G DUSP15 3'UTR 0.29 TCGA-C5-A2LY-01 20 30919064 30919064 C T KIF3B Missense_Mutation p.S729F 0.12 deleterious(0.04) possibly_damaging(0.485) TCGA-C5-A2LY-01 20 33703533 33703533 G A EDEM2 Silent p.I480I 0.39 TCGA-C5-A2LY-01 20 49576332 49576332 C T MOCS3 Missense_Mutation p.S318F 0.23 deleterious(0.01) benign(0.031) TCGA-C5-A2LY-01 20 62612513 62612513 C T PRPF6 5'UTR 0.28 TCGA-C5-A2LY-01 21 43522324 43522324 C A UMODL1 Missense_Mutation p.T412K 0.25 deleterious(0) possibly_damaging(0.794) TCGA-C5-A2LY-01 22 30972854 30972854 C G PES1 3'UTR 0.25 TCGA-C5-A2LY-01 22 33260921 33260921 A G SYN3 Missense_Mutation p.F231S 0.17 deleterious(0) unknown(0) TCGA-C5-A2LY-01 22 41543909 41543909 C T EP300 Nonsense_Mutation p.Q734* 0.55 TCGA-C5-A2LY-01 22 44892915 44892915 C T LDOC1L Silent p.R174R 0.45 TCGA-C5-A2LY-01 2 135712322 135712322 A G CCNT2 3'UTR 0.55 TCGA-C5-A2LY-01 2 219920144 219920144 C G IHH Missense_Mutation p.E341Q 0.21 deleterious(0) possibly_damaging(0.492) TCGA-C5-A2LY-01 2 237074811 237074811 C G GBX2 Missense_Mutation p.E265Q 0.36 deleterious(0.01) possibly_damaging(0.864) TCGA-C5-A2LY-01 2 44065624 44065624 C T ABCG5 Intron 0.35 TCGA-C5-A2LY-01 2 69687268 69687268 C G RP11-427H3.3 RNA 0.42 TCGA-C5-A2LY-01 2 70995180 70995180 G A ADD2 5'UTR 0.47 TCGA-C5-A2LY-01 2 96968894 96968894 C T SNRNP200 Intron 0.42 TCGA-C5-A2LY-01 3 10491365 10491365 G A ATP2B2 5'UTR 0.33 TCGA-C5-A2LY-01 3 135869495 135869495 G C MSL2 3'UTR 0.47 TCGA-C5-A2LY-01 3 155611370 155611370 C G GMPS Missense_Mutation p.L31V 0.10 deleterious(0) probably_damaging(0.991) TCGA-C5-A2LY-01 3 182988151 182988151 C G B3GNT5 Missense_Mutation p.L189V 0.15 tolerated(0.24) benign(0.042) TCGA-C5-A2LY-01 3 193044800 193044800 G A ATP13A5 Missense_Mutation p.P503L 0.11 tolerated(0.05) probably_damaging(0.99) TCGA-C5-A2LY-01 3 50325530 50325530 G A IFRD2 3'UTR 0.36 TCGA-C5-A2LY-01 4 129864333 129864333 C T SCLT1 Missense_Mutation p.E484K 0.28 deleterious(0.03) benign(0.125) TCGA-C5-A2LY-01 4 151119167 151119167 G A DCLK2 Silent p.L291L 0.25 TCGA-C5-A2LY-01 4 155191072 155191072 A G DCHS2 Missense_Mutation p.L1731P 0.25 deleterious(0) possibly_damaging(0.876) TCGA-C5-A2LY-01 4 186068260 186068260 C G SLC25A4 3'UTR 0.33 TCGA-C5-A2LY-01 4 46995550 46995550 G A GABRA4 5'UTR 0.19 TCGA-C5-A2LY-01 4 49009317 49009317 G A CWH43 Missense_Mutation p.R387K 0.21 tolerated(0.87) benign(0.002) TCGA-C5-A2LY-01 5 10434072 10434072 A G MARCH6 3'UTR 0.19 TCGA-C5-A2LY-01 5 111496478 111496478 G C EPB41L4A 3'Flank 0.36 TCGA-C5-A2LY-01 5 121488596 121488596 G A ZNF474 Missense_Mutation p.R304K 0.35 tolerated(0.26) benign(0.3) TCGA-C5-A2LY-01 5 125895025 125895025 G T ALDH7A1 Silent p.A305A 0.22 TCGA-C5-A2LY-01 5 139876617 139876617 G T ANKHD1 Nonsense_Mutation p.E920* 0.34 TCGA-C5-A2LY-01 5 140554148 140554148 C T PCDHB7 Missense_Mutation p.R578W 0.33 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-C5-A2LY-01 5 142602773 142602773 C T ARHGAP26 3'UTR 0.24 TCGA-C5-A2LY-01 5 142658859 142658859 C T NR3C1 3'Flank 0.39 TCGA-C5-A2LY-01 5 14358454 14358454 C T TRIO Silent p.L738L 0.36 TCGA-C5-A2LY-01 5 149112454 149112454 G C PPARGC1B Intron 0.07 TCGA-C5-A2LY-01 5 32108116 32108116 G C PDZD2 Missense_Mutation p.E2799Q 0.28 tolerated(0.15) probably_damaging(1) TCGA-C5-A2LY-01 5 43280220 43280220 C A NIM1K Missense_Mutation p.P234T 0.22 deleterious(0.02) probably_damaging(1) TCGA-C5-A2LY-01 6 110300573 110300573 C A GPR6 Silent p.I86I 0.29 TCGA-C5-A2LY-01 6 160908333 160908333 G A LPAL2 Intron 0.50 TCGA-C5-A2LY-01 6 26043554 26043554 G A HIST1H2BB Missense_Mutation p.A111V 0.41 deleterious_low_confidence(0) benign(0.184) TCGA-C5-A2LY-01 6 33247107 33247107 C T WDR46 Silent p.A593A 0.51 TCGA-C5-A2LY-01 6 33411047 33411047 C G SYNGAP1 Silent p.L906L 0.52 TCGA-C5-A2LY-01 6 43307832 43307832 C G ZNF318 Missense_Mutation p.E1302Q 0.39 probably_damaging(0.946) TCGA-C5-A2LY-01 6 5004171 5004171 G A RPP40 Silent p.F22F 0.16 TCGA-C5-A2LY-01 7 106515171 106515171 G A PIK3CG Missense_Mutation p.E772K 0.30 deleterious(0.01) possibly_damaging(0.459) TCGA-C5-A2LY-01 7 128530497 128530497 G C KCP RNA 0.48 TCGA-C5-A2LY-01 7 16823870 16823870 G C TSPAN13 3'UTR 0.20 TCGA-C5-A2LY-01 7 19184632 19184632 G A FERD3L Silent p.N118N 0.29 TCGA-C5-A2LY-01 7 2472209 2472209 G C CHST12 5'UTR 0.48 TCGA-C5-A2LY-01 7 27181263 27181263 G T HOXA5 3'UTR 0.64 TCGA-C5-A2LY-01 8 143955881 143955881 C G CYP11B1 Missense_Mutation p.E474Q 0.29 deleterious(0.01) probably_damaging(0.978) TCGA-C5-A2LY-01 8 144102990 144102990 C T LY6E Silent p.L60L 0.36 TCGA-C5-A2LY-01 8 144459551 144459551 G A RHPN1 Missense_Mutation p.E103K 0.28 deleterious(0.01) benign(0.422) TCGA-C5-A2LY-01 8 67790806 67790806 C T MCMDC2 Intron 0.42 TCGA-C5-A2LY-01 8 68028332 68028332 G A CSPP1 Missense_Mutation p.A486T 0.26 tolerated(1) benign(0.003) TCGA-C5-A2LY-01 9 131254786 131254786 G A ODF2 Missense_Mutation p.E540K 0.24 deleterious(0) possibly_damaging(0.674) TCGA-C5-A2LY-01 9 131909780 131909780 C G PPP2R4 3'UTR 0.34 TCGA-C5-A2LY-01 9 140374817 140374817 C T PNPLA7 Missense_Mutation p.A843T 0.28 deleterious(0) probably_damaging(0.996) TCGA-C5-A2LY-01 9 23692324 23692324 C T ELAVL2 3'UTR 0.21 TCGA-C5-A2LY-01 9 35957557 35957557 C A OR2S2 Missense_Mutation p.C180F 0.19 deleterious(0) probably_damaging(0.982) TCGA-C5-A2LY-01 9 40716035 40716035 C G FAM74A3 RNA 0.19 TCGA-C5-A2LY-01 9 74969370 74969370 G A ZFAND5 3'UTR 0.30 TCGA-C5-A2LY-01 9 74970277 74970277 G C ZFAND5 3'UTR 0.47 TCGA-C5-A2LY-01 X 102319141 102319141 C T BEX1 5'UTR 0.21 TCGA-C5-A2LY-01 X 129215371 129215371 G A ELF4 5'UTR 0.22 TCGA-C5-A2LY-01 X 135767897 135767897 A G ARHGEF6 Missense_Mutation p.I444T 0.20 deleterious(0) possibly_damaging(0.68) TCGA-C5-A2LY-01 X 140996698 140996698 G T MAGEC1 3'UTR 0.24 TCGA-C5-A2LY-01 X 1497556 1497556 C G IL3RA Missense_Mutation p.C293W 0.14 deleterious(0) probably_damaging(0.998) TCGA-C5-A2LY-01 X 150156924 150156924 G A HMGB3 3'UTR 0.35 TCGA-C5-A2LY-01 X 153630959 153630959 G A DNASE1L1 3'UTR 0.24 TCGA-C5-A2LY-01 X 3028268 3028268 C T ARSF Silent p.A455A 0.31 TCGA-C5-A2LY-01 X 37027120 37027120 G A FAM47C Missense_Mutation p.E213K 0.08 deleterious(0.03) probably_damaging(0.98) TCGA-C5-A2LY-01 X 41555523 41555523 G A GPR34 Missense_Mutation p.A213T 0.27 tolerated(0.11) benign(0.067) TCGA-C5-A2LY-01 X 46618170 46618170 G C SLC9A7 Missense_Mutation p.L99V 0.24 tolerated(0.1) benign(0.029) TCGA-C5-A2LY-01 X 47028893 47028893 C T RBM10 Missense_Mutation p.A66V 0.28 tolerated(0.15) benign(0.002) TCGA-C5-A2LY-01 X 54264889 54264889 C T WNK3 Missense_Mutation p.M1300I 0.28 tolerated(0.72) benign(0.001) TCGA-C5-A2LY-01 X 7137546 7137546 G A STS 5'UTR 0.29 TCGA-C5-A2M1-01 10 104164743 104164743 G T PSD Missense_Mutation p.L823M 0.31 deleterious(0.01) probably_damaging(1) TCGA-C5-A2M1-01 10 119302808 119302808 C T EMX2 Silent p.F10F 0.38 TCGA-C5-A2M1-01 10 73472508 73472508 C T C10orf105 3'UTR 0.37 TCGA-C5-A2M1-01 10 88911700 88911700 G C FAM35A Missense_Mutation p.E197Q 0.26 tolerated(0.31) benign(0.029) TCGA-C5-A2M1-01 11 2161738 2161738 G A IGF2 Intron 0.40 TCGA-C5-A2M1-01 11 59361164 59361164 C T OSBP Missense_Mutation p.A531T 0.05 tolerated(0.13) probably_damaging(0.945) TCGA-C5-A2M1-01 11 61914294 61914294 G C INCENP Silent p.R708R 0.27 TCGA-C5-A2M1-01 11 65563604 65563604 G A OVOL1 3'UTR 0.06 TCGA-C5-A2M1-01 11 6566173 6566173 C T DNHD1 Missense_Mutation p.S1335L 0.40 probably_damaging(0.994) TCGA-C5-A2M1-01 12 15475562 15475562 G A PTPRO 5'UTR 0.58 TCGA-C5-A2M1-01 12 1992068 1992068 C T CACNA2D4 Missense_Mutation p.D484N 0.40 deleterious(0.04) benign(0.266) TCGA-C5-A2M1-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.56 deleterious(0.03) possibly_damaging(0.876) TCGA-C5-A2M1-01 13 111155758 111155758 G T COL4A2 Silent p.G1356G 0.29 TCGA-C5-A2M1-01 13 73636073 73636073 T G KLF5 Nonsense_Mutation p.Y112* 0.07 TCGA-C5-A2M1-01 14 105517706 105517706 G C GPR132 Silent p.A256A 0.58 TCGA-C5-A2M1-01 15 24921639 24921639 G A NPAP1 Missense_Mutation p.E209K 0.25 tolerated(0.21) benign(0.135) TCGA-C5-A2M1-01 15 78385042 78385042 C A SH2D7 Missense_Mutation p.A39D 0.47 deleterious(0) probably_damaging(0.996) TCGA-C5-A2M1-01 15 83349469 83349469 G A AP3B2 Silent p.Y270Y 0.38 TCGA-C5-A2M1-01 16 15788044 15788044 G A NDE1 Silent p.G242G 0.38 TCGA-C5-A2M1-01 16 20441034 20441034 G A ACSM5 Missense_Mutation p.G346R 0.33 deleterious(0) probably_damaging(0.91) TCGA-C5-A2M1-01 16 2152631 2152631 G C PKD1 Missense_Mutation p.S2984R 0.33 benign(0.042) TCGA-C5-A2M1-01 16 22588020 22588020 G T RP11-368J21.3 RNA 0.24 TCGA-C5-A2M1-01 16 683018 683018 C T WFIKKN1 Missense_Mutation p.A203V 0.40 tolerated(1) benign(0.058) TCGA-C5-A2M1-01 16 9017100 9017100 G C USP7 Missense_Mutation p.L119V 0.26 tolerated(0.07) possibly_damaging(0.821) TCGA-C5-A2M1-01 17 4837790 4837790 C T GP1BA Silent p.L631L 0.65 TCGA-C5-A2M1-01 17 62291462 62291462 G A TEX2 Missense_Mutation p.S39L 0.32 deleterious_low_confidence(0.03) benign(0.007) TCGA-C5-A2M1-01 17 62969586 62969586 G C AMZ2P1 RNA 0.24 TCGA-C5-A2M1-01 17 74208510 74208510 G A RNF157 Missense_Mutation p.H48Y 0.21 deleterious(0) possibly_damaging(0.885) TCGA-C5-A2M1-01 17 76121965 76121965 C A TMC6 Missense_Mutation p.G91V 0.30 deleterious(0) probably_damaging(0.978) TCGA-C5-A2M1-01 17 7982836 7982836 C T ALOX12B Missense_Mutation p.D317N 0.65 deleterious(0.03) probably_damaging(1) TCGA-C5-A2M1-01 18 19203860 19203860 G C SNRPD1 Silent p.V81V 0.30 TCGA-C5-A2M1-01 18 19409106 19409106 G A MIB1 Intron 0.24 TCGA-C5-A2M1-01 18 33257664 33257664 C T GALNT1 Missense_Mutation p.R142C 0.72 deleterious(0) probably_damaging(0.998) TCGA-C5-A2M1-01 18 60646371 60646371 C T PHLPP1 Missense_Mutation p.R1621W 0.53 deleterious(0) probably_damaging(0.982) TCGA-C5-A2M1-01 19 1117401 1117401 C T SBNO2 Missense_Mutation p.R542H 0.37 deleterious(0) probably_damaging(0.931) TCGA-C5-A2M1-01 19 22271066 22271066 A T ZNF257 Missense_Mutation p.T172S 0.33 tolerated(0.2) benign(0.002) TCGA-C5-A2M1-01 19 42989362 42989362 C T LIPE-AS1 RNA 0.36 TCGA-C5-A2M1-01 19 44514810 44514810 C T ZNF230 Nonsense_Mutation p.Q207* 0.22 TCGA-C5-A2M1-01 19 45728159 45728159 C T EXOC3L2 Silent p.E139E 0.32 TCGA-C5-A2M1-01 19 46331136 46331136 C T SYMPK Missense_Mutation p.E676K 0.29 deleterious(0.04) benign(0.028) TCGA-C5-A2M1-01 19 49464129 49464129 C T BAX Silent p.L144L 0.18 TCGA-C5-A2M1-01 19 549708 549708 A C GZMM Missense_Mutation p.T231P 0.41 tolerated(0.06) possibly_damaging(0.906) TCGA-C5-A2M1-01 1 108292200 108292200 C G VAV3 Missense_Mutation p.D426H 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A2M1-01 1 1221039 1221039 G A SCNN1D Missense_Mutation p.G185S 0.39 tolerated(0.12) benign(0.064) TCGA-C5-A2M1-01 1 1268706 1268706 C G TAS1R3 Missense_Mutation p.S516C 0.28 tolerated(0.06) probably_damaging(0.99) TCGA-C5-A2M1-01 1 150413444 150413444 G T RPRD2 Missense_Mutation p.W127C 0.40 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-C5-A2M1-01 1 158436055 158436055 A G OR10K1 Missense_Mutation p.Y235C 0.40 tolerated(0.09) benign(0.049) TCGA-C5-A2M1-01 1 160390959 160390959 T C VANGL2 Missense_Mutation p.V352A 0.29 deleterious(0.03) benign(0.266) TCGA-C5-A2M1-01 1 17023009 17023009 G A ESPNP RNA 0.15 TCGA-C5-A2M1-01 1 200818630 200818630 G A CAMSAP2 Missense_Mutation p.M911I 0.38 deleterious(0) probably_damaging(0.984) TCGA-C5-A2M1-01 1 214820477 214820477 G A CENPF Missense_Mutation p.E2522K 0.56 possibly_damaging(0.616) TCGA-C5-A2M1-01 1 244217802 244217802 G A ZBTB18 Silent p.S242S 0.30 TCGA-C5-A2M1-01 1 248004471 248004471 G A OR11L1 Missense_Mutation p.S243F 0.17 deleterious(0) probably_damaging(0.996) TCGA-C5-A2M1-01 1 46512229 46512229 G C PIK3R3 Missense_Mutation p.A337G 0.34 tolerated(0.49) benign(0.001) TCGA-C5-A2M1-01 1 55505538 55505539 - GA PCSK9 Nonsense_Mutation p.W10* 0.38 TCGA-C5-A2M1-01 1 65296823 65296823 A G RAVER2 3'UTR 0.27 TCGA-C5-A2M1-01 1 94983783 94983783 C T ABCD3 3'UTR 0.41 TCGA-C5-A2M1-01 20 49199371 49199371 C T PTPN1 3'UTR 0.31 TCGA-C5-A2M1-01 22 24376407 24376407 G T GSTT1 3'UTR 0.30 TCGA-C5-A2M1-01 22 24698198 24698198 G C SPECC1L 5'UTR 0.24 TCGA-C5-A2M1-01 22 36684935 36684937 CTC - MYH9 In_Frame_Del p.E1536del 0.37 TCGA-C5-A2M1-01 22 38823295 38823295 C T KCNJ4 Silent p.S281S 0.38 TCGA-C5-A2M1-01 22 39482545 39482545 G T APOBEC3G Missense_Mutation p.A333S 0.36 deleterious(0) probably_damaging(0.924) TCGA-C5-A2M1-01 2 112761481 112761481 G T MERTK Missense_Mutation p.G596V 0.83 deleterious(0) probably_damaging(0.994) TCGA-C5-A2M1-01 2 128774091 128774091 G A SAP130 Missense_Mutation p.P153S 0.31 deleterious_low_confidence(0.05) probably_damaging(0.991) TCGA-C5-A2M1-01 2 202131491 202131491 C T CASP8 Silent p.G153G 0.62 TCGA-C5-A2M1-01 2 20234742 20234742 A G LAPTM4A Missense_Mutation p.F172L 0.06 tolerated(0.12) benign(0.005) TCGA-C5-A2M1-01 2 202352336 202352336 C T ALS2CR11 Silent p.%3D 0.66 TCGA-C5-A2M1-01 2 228563510 228563510 C T SLC19A3 Silent p.A307A 0.09 TCGA-C5-A2M1-01 2 43571324 43571342 TCTGAATTCGTTCCGTGTT - THADA Frame_Shift_Del p.K1421Tfs*6 0.59 TCGA-C5-A2M1-01 2 79363999 79363999 C G REG1P RNA 0.60 TCGA-C5-A2M1-01 2 87240021 87240021 G C RGPD1 3'UTR 0.92 TCGA-C5-A2M1-01 2 87240096 87240096 G C RGPD1 3'UTR 0.86 TCGA-C5-A2M1-01 3 124132404 124132404 C T KALRN Missense_Mutation p.R810W 0.25 tolerated(0.08) probably_damaging(0.988) TCGA-C5-A2M1-01 3 127817765 127817765 C T RUVBL1 Missense_Mutation p.M259I 0.31 tolerated(0.18) benign(0.008) TCGA-C5-A2M1-01 3 158399891 158399891 C T GFM1 Missense_Mutation p.S570L 0.38 tolerated(0.29) benign(0.002) TCGA-C5-A2M1-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-C5-A2M1-01 3 183638461 183638461 A G ABCC5 3'UTR 0.40 TCGA-C5-A2M1-01 3 19295170 19295170 C T KCNH8 Missense_Mutation p.A34V 0.38 deleterious(0) probably_damaging(0.999) TCGA-C5-A2M1-01 3 3084769 3084769 C T CNTN4 Missense_Mutation p.H874Y 0.33 tolerated(1) benign(0.005) TCGA-C5-A2M1-01 3 42576527 42576527 C T VIPR1 Silent p.F357F 0.27 TCGA-C5-A2M1-01 3 42777313 42777313 C G CCDC13 Silent p.L419L 0.36 TCGA-C5-A2M1-01 3 46009302 46009302 G T FYCO1 Silent p.V508V 0.33 TCGA-C5-A2M1-01 3 47454054 47454054 C T PTPN23 Silent p.V1456V 0.45 TCGA-C5-A2M1-01 3 64133026 64133026 G T PRICKLE2 Missense_Mutation p.S380R 0.26 deleterious(0) probably_damaging(0.972) TCGA-C5-A2M1-01 3 69070534 69070534 T C TMF1 3'UTR 0.37 TCGA-C5-A2M1-01 4 1018825 1018827 AGA - FGFRL1 In_Frame_Del p.K404del 0.30 TCGA-C5-A2M1-01 4 114279594 114279594 C A ANK2 Missense_Mutation p.P3274T 0.33 probably_damaging(0.94) TCGA-C5-A2M1-01 4 126372317 126372317 A G FAT4 Silent p.R3382R 0.28 TCGA-C5-A2M1-01 4 129012266 129012266 C T LARP1B Missense_Mutation p.R157W 0.21 deleterious(0.04) benign(0.308) TCGA-C5-A2M1-01 4 15070967 15070968 - A CPEB2 3'UTR 0.28 TCGA-C5-A2M1-01 4 155287549 155287549 G A DCHS2 Silent p.D169D 0.39 TCGA-C5-A2M1-01 4 176556076 176556076 G T GPM6A Silent p.R273R 0.31 TCGA-C5-A2M1-01 4 2176453 2176453 C T POLN Missense_Mutation p.R425H 0.44 tolerated(0.06) benign(0.015) TCGA-C5-A2M1-01 4 5458637 5458637 C G STK32B Missense_Mutation p.A257G 0.20 tolerated(0.12) benign(0.287) TCGA-C5-A2M1-01 4 6037659 6037659 C T JAKMIP1 Missense_Mutation p.R784H 0.32 deleterious(0) possibly_damaging(0.885) TCGA-C5-A2M1-01 4 69083668 69083668 A T TMPRSS11BNL 5'UTR 0.39 TCGA-C5-A2M1-01 4 952031 952031 C A TMEM175 Missense_Mutation p.A421D 0.34 deleterious(0) probably_damaging(0.993) TCGA-C5-A2M1-01 5 129521756 129521756 C G CHSY3 3'UTR 0.31 TCGA-C5-A2M1-01 5 130883758 130883758 C T RAPGEF6 Silent p.E159E 0.12 TCGA-C5-A2M1-01 5 137323274 137323274 C A FAM13B Nonsense_Mutation p.E308* 0.32 TCGA-C5-A2M1-01 5 154242942 154242943 - TTATA CNOT8 Frame_Shift_Ins p.A38Ifs*23 0.35 TCGA-C5-A2M1-01 5 37006623 37006623 T A NIPBL Silent p.T1340T 0.16 TCGA-C5-A2M1-01 5 37006624 37006624 A T NIPBL Nonsense_Mutation p.K1341* 0.16 TCGA-C5-A2M1-01 5 38407090 38407090 G A EGFLAM Missense_Mutation p.R330K 0.08 tolerated(0.23) benign(0.002) TCGA-C5-A2M1-01 5 82807996 82807996 G T VCAN Missense_Mutation p.A275S 0.33 deleterious(0.04) possibly_damaging(0.803) TCGA-C5-A2M1-01 6 143081676 143081676 C G HIVEP2 Missense_Mutation p.D1917H 0.33 deleterious(0) possibly_damaging(0.866) TCGA-C5-A2M1-01 6 143081724 143081724 C T HIVEP2 Missense_Mutation p.E1901K 0.33 deleterious(0.01) probably_damaging(0.993) TCGA-C5-A2M1-01 6 155775958 155775958 C T NOX3 Missense_Mutation p.R81K 0.27 deleterious(0.01) benign(0.094) TCGA-C5-A2M1-01 6 158923338 158923338 C T TULP4 Silent p.T881T 0.50 TCGA-C5-A2M1-01 6 26045675 26045675 G T HIST1H3C Missense_Mutation p.G13C 0.65 deleterious_low_confidence(0) benign(0.099) TCGA-C5-A2M1-01 6 31584177 31584177 G C AIF1 Missense_Mutation p.E85Q 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A2M1-01 6 32030199 32030199 G - TNXB Frame_Shift_Del p.I2302Sfs*8 0.31 TCGA-C5-A2M1-01 6 51503660 51503660 G A PKHD1 Silent p.V3831V 0.31 TCGA-C5-A2M1-01 6 7566637 7566637 G C DSP Missense_Mutation p.E323Q 0.21 probably_damaging(0.987) TCGA-C5-A2M1-01 6 97345680 97345680 C G NDUFAF4 5'UTR 0.38 TCGA-C5-A2M1-01 7 1479617 1479617 G T MICALL2 Missense_Mutation p.T637N 0.57 tolerated(0.07) probably_damaging(0.927) TCGA-C5-A2M1-01 7 15725877 15725877 C T MEOX2 Missense_Mutation p.A51T 0.25 tolerated(0.59) benign(0) TCGA-C5-A2M1-01 7 2472248 2472248 G C CHST12 5'UTR 0.31 TCGA-C5-A2M1-01 7 55499004 55499004 G C LANCL2 Missense_Mutation p.K448N 0.38 deleterious_low_confidence(0.01) benign(0.013) TCGA-C5-A2M1-01 7 87083892 87083892 C T ABCB4 Silent p.S101S 0.30 TCGA-C5-A2M1-01 7 90897401 90897401 C T FZD1 3'UTR 0.29 TCGA-C5-A2M1-01 7 97937178 97937178 G A BAIAP2L1 Missense_Mutation p.S329L 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A2M1-01 8 128808236 128808236 G A PVT1 RNA 0.12 TCGA-C5-A2M1-01 8 24256534 24256534 G A ADAMDEC1 Missense_Mutation p.D304N 0.31 tolerated(0.09) benign(0.208) TCGA-C5-A2M1-01 8 37691313 37691313 G C GPR124 Missense_Mutation p.Q468H 0.24 tolerated(0.27) probably_damaging(0.976) TCGA-C5-A2M1-01 8 72754893 72754893 G A MSC 3'UTR 0.54 TCGA-C5-A2M1-01 9 130257620 130257620 G A LRSAM1 Missense_Mutation p.E541K 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-C5-A2M1-01 9 136649441 136649441 G C VAV2 Silent p.L544L 0.40 TCGA-C5-A2M1-01 9 35450348 35450348 G T ATP8B5P RNA 0.34 TCGA-C5-A2M1-01 9 90296363 90296363 G A DAPK1 Silent p.Q682Q 0.28 TCGA-C5-A2M1-01 9 94830364 94830364 C T SPTLC1 Silent p.L148L 0.28 TCGA-C5-A2M1-01 X 135431359 135431359 T A GPR112 Missense_Mutation p.S1832T 0.34 deleterious(0.01) benign(0.34) TCGA-C5-A2M1-01 X 137714932 137714932 G - FGF13 3'Flank 0.20 TCGA-C5-A2M1-01 X 152957007 152957007 G T SLC6A8 Nonsense_Mutation p.E215* 0.40 TCGA-C5-A2M1-01 X 155003760 155003760 C T SPRY3 Missense_Mutation p.P76L 0.11 tolerated(0.2) benign(0.001) TCGA-C5-A2M1-01 X 21444770 21444770 T C CNKSR2 Missense_Mutation p.C74R 0.18 deleterious(0) benign(0.004) TCGA-C5-A2M1-01 X 37208597 37208597 G A PRRG1 5'UTR 0.33 TCGA-C5-A2M1-01 X 48781175 48781175 G T OTUD5 Missense_Mutation p.P478Q 0.32 deleterious(0) probably_damaging(0.988) TCGA-C5-A2M1-01 X 48839723 48839723 G A GRIPAP1 Missense_Mutation p.R468C 0.26 possibly_damaging(0.899) TCGA-C5-A2M1-01 X 5821213 5821213 G T NLGN4X Silent p.I502I 0.32 TCGA-C5-A2M2-01 10 105233227 105233227 G A CALHM3 Missense_Mutation p.R260C 0.53 deleterious(0.02) possibly_damaging(0.599) TCGA-C5-A2M2-01 10 51623133 51623133 G A TIMM23 Missense_Mutation p.H28Y 0.20 deleterious(0.03) benign(0.328) TCGA-C5-A2M2-01 11 120980048 120980048 C T TECTA Silent p.G109G 0.28 TCGA-C5-A2M2-01 11 49221932 49221932 T A FOLH1 Missense_Mutation p.I96F 0.53 deleterious(0) probably_damaging(0.969) TCGA-C5-A2M2-01 11 5009511 5009511 G T MMP26 Missense_Mutation p.A24S 0.51 tolerated(0.77) benign(0.003) TCGA-C5-A2M2-01 11 64608046 64608046 G A CDC42BPG Silent p.A137A 0.36 TCGA-C5-A2M2-01 11 66107661 66107661 C T BRMS1 Missense_Mutation p.A187T 0.30 tolerated(0.35) benign(0.005) TCGA-C5-A2M2-01 11 78574141 78574141 G A TENM4 Missense_Mutation p.P374L 0.70 deleterious(0.01) benign(0.428) TCGA-C5-A2M2-01 12 100811871 100811871 C T SLC17A8 Silent p.N454N 0.48 TCGA-C5-A2M2-01 12 120518765 120518765 G A CCDC64 Silent p.K461K 0.63 TCGA-C5-A2M2-01 12 129189973 129189973 C T TMEM132C Silent p.H820H 0.52 TCGA-C5-A2M2-01 12 22063160 22063160 G A ABCC9 Silent p.V417V 0.52 TCGA-C5-A2M2-01 12 5020582 5020582 C T KCNA1 Missense_Mutation p.S13L 0.77 tolerated_low_confidence(0.36) benign(0.068) TCGA-C5-A2M2-01 12 52284476 52284476 G A ANKRD33 Missense_Mutation p.R249Q 0.63 deleterious(0.04) probably_damaging(0.975) TCGA-C5-A2M2-01 12 56493441 56493441 T C ERBB3 Missense_Mutation p.I950T 0.32 deleterious(0) probably_damaging(0.991) TCGA-C5-A2M2-01 12 57167790 57167790 C T HSD17B6 Nonsense_Mutation p.R52* 0.09 TCGA-C5-A2M2-01 12 58157567 58157567 C T CYP27B1 Missense_Mutation p.A414T 0.44 deleterious(0.03) possibly_damaging(0.589) TCGA-C5-A2M2-01 13 109779887 109779887 C T MYO16 Missense_Mutation p.A1325V 0.41 tolerated(0.28) benign(0.035) TCGA-C5-A2M2-01 14 103406615 103406615 G T CDC42BPB Missense_Mutation p.D1485E 0.53 deleterious(0.01) benign(0.138) TCGA-C5-A2M2-01 14 23075345 23075345 C T ABHD4 Nonsense_Mutation p.R220* 0.50 TCGA-C5-A2M2-01 14 45623980 45623980 C T FANCM Missense_Mutation p.R422C 0.52 deleterious(0.04) benign(0.058) TCGA-C5-A2M2-01 14 51561129 51561129 C T TRIM9 Missense_Mutation p.E177K 0.44 tolerated(0.4) benign(0.01) TCGA-C5-A2M2-01 15 64426947 64426947 C T SNX1 Missense_Mutation p.R436W 0.58 deleterious(0) probably_damaging(0.986) TCGA-C5-A2M2-01 15 79760660 79760660 G C KIAA1024 Silent p.L895L 0.59 TCGA-C5-A2M2-01 16 2158331 2158331 G A PKD1 Silent p.S2279S 0.55 TCGA-C5-A2M2-01 16 69074262 69074262 C T TANGO6 Missense_Mutation p.R1016C 0.52 deleterious(0) probably_damaging(0.999) TCGA-C5-A2M2-01 16 89597182 89597182 A G SPG7 Missense_Mutation p.K318R 0.89 deleterious(0) probably_damaging(0.979) TCGA-C5-A2M2-01 17 17127274 17127274 G A FLCN Missense_Mutation p.R194W 0.44 deleterious(0) probably_damaging(0.991) TCGA-C5-A2M2-01 17 34062186 34062186 C T RASL10B 5'UTR 0.54 TCGA-C5-A2M2-01 17 73752597 73752597 G A ITGB4 Missense_Mutation p.R1599H 0.93 tolerated(0.06) benign(0.179) TCGA-C5-A2M2-01 18 12463427 12463427 G A SPIRE1 Nonsense_Mutation p.R521* 0.51 TCGA-C5-A2M2-01 18 6977743 6977743 G A LAMA1 Missense_Mutation p.R2110C 0.46 deleterious(0) probably_damaging(1) TCGA-C5-A2M2-01 19 33355560 33355560 C T SLC7A9 Silent p.A70A 0.54 TCGA-C5-A2M2-01 19 3907823 3907823 C T ATCAY Silent p.N150N 0.45 TCGA-C5-A2M2-01 19 53344188 53344188 G T ZNF468 Missense_Mutation p.H453Q 0.42 tolerated(0.27) benign(0.093) TCGA-C5-A2M2-01 19 58596127 58596127 C T ZSCAN18 Silent p.A542A 0.17 TCGA-C5-A2M2-01 1 113057560 113057560 C T WNT2B Missense_Mutation p.R83W 0.41 deleterious(0) probably_damaging(1) TCGA-C5-A2M2-01 1 1403768 1403768 C T ATAD3C Missense_Mutation p.T365M 0.40 tolerated(0.23) benign(0.018) TCGA-C5-A2M2-01 20 20350527 20350527 G A INSM1 3'UTR 0.42 TCGA-C5-A2M2-01 20 23060907 23060907 C A CD93 3'UTR 0.52 TCGA-C5-A2M2-01 22 22782253 22782253 C A IGLV5-37 Missense_Mutation p.P84H 0.33 deleterious(0.01) possibly_damaging(0.878) TCGA-C5-A2M2-01 22 46790106 46790106 C T CELSR1 Missense_Mutation p.C1966Y 0.50 deleterious(0) probably_damaging(0.984) TCGA-C5-A2M2-01 2 111907704 111907704 A - BCL2L11 Frame_Shift_Del p.N160Tfs*10 0.38 TCGA-C5-A2M2-01 2 130739388 130739388 C A RAB6C 3'UTR 0.43 TCGA-C5-A2M2-01 2 232323043 232323043 T C NCL Missense_Mutation p.E408G 0.88 probably_damaging(0.959) TCGA-C5-A2M2-01 3 126679200 126679200 G A CHCHD6 3'UTR 0.65 TCGA-C5-A2M2-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.75 deleterious(0.04) probably_damaging(0.96) TCGA-C5-A2M2-01 3 183976449 183976449 G A ECE2 Intron 0.86 TCGA-C5-A2M2-01 3 195488431 195488431 G A MUC4 Silent p.D4846D 0.13 TCGA-C5-A2M2-01 5 137589844 137589844 C T GFRA3 Missense_Mutation p.R264H 0.37 tolerated(0.06) probably_damaging(1) TCGA-C5-A2M2-01 5 140209165 140209165 C T PCDHA6 Missense_Mutation p.R497W 0.45 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-C5-A2M2-01 5 140699972 140699972 C T TAF7 5'UTR 0.34 TCGA-C5-A2M2-01 5 149754216 149754216 G - TCOF1 Frame_Shift_Del p.A374Pfs*119 0.36 TCGA-C5-A2M2-01 5 171288851 171288851 C T FBXW11 3'UTR 0.39 TCGA-C5-A2M2-01 5 177422889 177422889 G A PROP1 Nonsense_Mutation p.R16* 0.31 TCGA-C5-A2M2-01 5 180058719 180058719 C T FLT4 Missense_Mutation p.V40I 0.34 tolerated(0.28) benign(0.078) TCGA-C5-A2M2-01 5 79278188 79278188 G A MTX3 3'UTR 0.56 TCGA-C5-A2M2-01 5 92929675 92929675 G A NR2F1 3'UTR 0.70 TCGA-C5-A2M2-01 6 116720653 116720653 C G DSE Silent p.S80S 0.55 TCGA-C5-A2M2-01 6 138192623 138192623 C G TNFAIP3 Missense_Mutation p.R87G 0.55 deleterious(0.03) possibly_damaging(0.836) TCGA-C5-A2M2-01 6 169623562 169623562 G A THBS2 Missense_Mutation p.R928W 0.61 deleterious(0.01) probably_damaging(1) TCGA-C5-A2M2-01 6 37605156 37605156 C T MDGA1 Silent p.A952A 0.56 TCGA-C5-A2M2-01 6 39304201 39304201 C T KIF6 3'UTR 0.50 TCGA-C5-A2M2-01 6 43412981 43412981 G T ABCC10 Missense_Mutation p.V987L 0.38 tolerated(0.06) benign(0.032) TCGA-C5-A2M2-01 7 135412288 135412288 C T SLC13A4 5'UTR 0.27 TCGA-C5-A2M2-01 7 1484568 1484568 C T MICALL2 Missense_Mutation p.G380R 0.27 tolerated(0.53) benign(0.235) TCGA-C5-A2M2-01 7 151814303 151814303 G A GALNT11 Missense_Mutation p.R432H 0.55 deleterious(0.02) benign(0.082) TCGA-C5-A2M2-01 7 1787342 1787342 G T ELFN1 3'UTR 0.38 TCGA-C5-A2M2-01 7 18868819 18868819 C T HDAC9 Silent p.H786H 0.51 TCGA-C5-A2M2-01 7 55272966 55272966 G A EGFR Missense_Mutation p.V1097I 0.40 tolerated(0.26) benign(0.001) TCGA-C5-A2M2-01 7 72040672 72040672 G T TYW1B Silent p.I232I 0.37 TCGA-C5-A2M2-01 9 139912772 139912772 C T ABCA2 Silent p.S617S 0.52 TCGA-C5-A2M2-01 9 79324401 79324401 C T PRUNE2 Missense_Mutation p.G930E 0.43 tolerated(0.1) possibly_damaging(0.813) TCGA-C5-A2M2-01 X 107320504 107320504 G A VSIG1 Missense_Mutation p.E389K 0.46 tolerated_low_confidence(0.08) unknown(0) TCGA-C5-A2M2-01 X 118604982 118604982 T G SLC25A5 Missense_Mutation p.F286L 0.41 tolerated(1) benign(0.007) TCGA-C5-A2M2-01 X 123034424 123034424 A T XIAP Missense_Mutation p.E394V 0.07 deleterious(0.02) benign(0.008) TCGA-C5-A2M2-01 X 13337277 13337277 G A ATXN3L Silent p.S259S 0.49 TCGA-C5-A2M2-01 X 48681793 48681793 C T HDAC6 Missense_Mutation p.S995L 0.50 tolerated(0.27) benign(0.001) TCGA-C5-A2M2-01 X 65242304 65242304 A C VSIG4 Missense_Mutation p.M334R 0.61 tolerated(0.44) benign(0.047) TCGA-C5-A2M2-01 X 73955409 73955409 C T KIAA2022 3'UTR 0.60 TCGA-C5-A3HF-01 10 102724278 102724278 A G FAM178A 3'Flank 0.17 TCGA-C5-A3HF-01 10 15210655 15210655 G A NMT2 5'UTR 0.24 TCGA-C5-A3HF-01 10 5904161 5904161 C T ANKRD16 3'UTR 0.10 TCGA-C5-A3HF-01 11 70183532 70183532 A G PPFIA1 Missense_Mutation p.K497R 0.21 tolerated(0.07) benign(0.303) TCGA-C5-A3HF-01 11 74651913 74651913 G A XRRA1 Missense_Mutation p.S4L 0.10 tolerated(0.07) benign(0.017) TCGA-C5-A3HF-01 12 111701570 111701570 G A CUX2 Silent p.V76V 0.16 TCGA-C5-A3HF-01 12 113379576 113379576 G - OAS3 Frame_Shift_Del p.A128Pfs*6 0.19 TCGA-C5-A3HF-01 12 124421823 124421823 C G CCDC92 Missense_Mutation p.E260Q 0.22 tolerated(0.08) probably_damaging(0.917) TCGA-C5-A3HF-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.18 deleterious(0.04) possibly_damaging(0.506) TCGA-C5-A3HF-01 13 110408192 110408192 G C IRS2 3'UTR 0.12 TCGA-C5-A3HF-01 14 63842613 63842613 G A PPP2R5E 3'UTR 0.15 TCGA-C5-A3HF-01 15 79750542 79750542 G A KIAA1024 Missense_Mutation p.D685N 0.23 tolerated(0.28) possibly_damaging(0.791) TCGA-C5-A3HF-01 16 1841503 1841503 G A IGFALS Missense_Mutation p.R344W 0.26 deleterious(0) probably_damaging(0.995) TCGA-C5-A3HF-01 16 4910677 4910677 C G UBN1 Silent p.L228L 0.23 TCGA-C5-A3HF-01 17 1416761 1416761 G A INPP5K Silent p.L83L 0.22 TCGA-C5-A3HF-01 17 1802361 1802361 C T RPA1 3'UTR 0.18 TCGA-C5-A3HF-01 18 7231199 7231199 G A LRRC30 Silent p.T21T 0.12 TCGA-C5-A3HF-01 19 30935491 30935491 C T ZNF536 Missense_Mutation p.S341L 0.15 tolerated(0.36) benign(0.073) TCGA-C5-A3HF-01 19 4157158 4157158 C T CREB3L3 Missense_Mutation p.T108I 0.18 tolerated(0.1) benign(0.006) TCGA-C5-A3HF-01 19 46270270 46270270 G A SIX5 Missense_Mutation p.P316L 0.20 tolerated(0.35) benign(0.163) TCGA-C5-A3HF-01 19 49300457 49300457 C T BCAT2 Missense_Mutation p.E277K 0.11 tolerated(0.08) benign(0.011) TCGA-C5-A3HF-01 19 51848515 51848515 C T ETFB Missense_Mutation p.E331K 0.14 tolerated_low_confidence(0.14) possibly_damaging(0.801) TCGA-C5-A3HF-01 19 55668952 55668952 C T TNNI3 Silent p.A2A 0.14 TCGA-C5-A3HF-01 19 9057967 9057967 G A MUC16 Missense_Mutation p.H9827Y 0.22 unknown(0) TCGA-C5-A3HF-01 19 9062922 9062922 G A MUC16 Missense_Mutation p.S8175L 0.11 unknown(0) TCGA-C5-A3HF-01 1 104114862 104114862 G C AMY2B Missense_Mutation p.R100T 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-C5-A3HF-01 1 197072216 197072216 T C ASPM Silent p.R2055R 0.32 TCGA-C5-A3HF-01 1 247920940 247920940 C T OR1C1 Missense_Mutation p.A257T 0.31 deleterious(0.03) possibly_damaging(0.719) TCGA-C5-A3HF-01 1 38455632 38455632 C G SF3A3 Missense_Mutation p.E2D 0.09 tolerated(0.3) benign(0.179) TCGA-C5-A3HF-01 1 45480138 45480138 G A UROD Missense_Mutation p.G222R 0.20 deleterious(0) probably_damaging(1) TCGA-C5-A3HF-01 1 76282203 76282203 G C MSH4 Missense_Mutation p.E321Q 0.22 deleterious(0) probably_damaging(1) TCGA-C5-A3HF-01 20 40979319 40979319 G A PTPRT Missense_Mutation p.T605M 0.14 deleterious(0) possibly_damaging(0.65) TCGA-C5-A3HF-01 20 4155761 4155761 G A SMOX Missense_Mutation p.R20Q 0.17 deleterious(0.05) possibly_damaging(0.787) TCGA-C5-A3HF-01 20 42697659 42697659 G A TOX2 3'Flank 0.26 TCGA-C5-A3HF-01 21 31864043 31864043 G A KRTAP19-3 Missense_Mutation p.S78F 0.07 deleterious_low_confidence(0) unknown(0) TCGA-C5-A3HF-01 22 32302364 32302364 G A DEPDC5 Missense_Mutation p.D1556N 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A3HF-01 22 50897698 50897698 T C SBF1 Missense_Mutation p.H1271R 0.21 tolerated(0.41) benign(0.175) TCGA-C5-A3HF-01 2 172195993 172195993 C G METTL8 Missense_Mutation p.D103H 0.19 deleterious(0) possibly_damaging(0.894) TCGA-C5-A3HF-01 2 200136241 200136241 C G SATB2 3'UTR 0.16 TCGA-C5-A3HF-01 2 220348578 220348578 C T SPEG Silent p.F2131F 0.24 TCGA-C5-A3HF-01 2 241664739 241664739 G A KIF1A Missense_Mutation p.S1402L 0.29 deleterious(0) benign(0.396) TCGA-C5-A3HF-01 2 63223871 63223871 G C EHBP1 Missense_Mutation p.E1096Q 0.12 deleterious(0) probably_damaging(1) TCGA-C5-A3HF-01 2 91805951 91805951 G T AC116050.1 Intron 0.21 TCGA-C5-A3HF-01 3 122991961 122991961 G A SEC22A 3'UTR 0.36 TCGA-C5-A3HF-01 3 16252735 16252735 A G GALNT15 Missense_Mutation p.E395G 0.22 deleterious(0) probably_damaging(0.998) TCGA-C5-A3HF-01 3 44611880 44611880 C T ZKSCAN7 Silent p.L426L 0.17 TCGA-C5-A3HF-01 3 52183327 52183327 G A POC1A Silent p.F118F 0.27 TCGA-C5-A3HF-01 3 9512325 9512325 C T SETD5 Silent p.L969L 0.27 TCGA-C5-A3HF-01 4 71768103 71768103 C G MOB1B 5'UTR 0.22 TCGA-C5-A3HF-01 5 100147189 100147189 C T ST8SIA4 3'UTR 0.19 TCGA-C5-A3HF-01 5 76029187 76029187 G A F2R Silent p.Q379Q 0.24 TCGA-C5-A3HF-01 7 128595129 128595129 T C TNPO3 3'Flank 0.19 TCGA-C5-A3HF-01 7 99773202 99773202 C T GPC2 Missense_Mutation p.R214H 0.21 tolerated(0.08) benign(0.04) TCGA-C5-A3HF-01 9 106882375 106882375 G A SMC2 Silent p.L688L 0.22 TCGA-C5-A3HF-01 9 107266772 107266772 G T OR13F1 Missense_Mutation p.A77S 0.18 tolerated(1) benign(0.345) TCGA-C5-A3HF-01 9 127640761 127640761 C T GOLGA1 3'UTR 0.25 TCGA-C5-A3HF-01 9 85597450 85597450 G C RASEF 3'UTR 0.24 TCGA-C5-A3HF-01 X 102755559 102755559 C T RAB40A Silent p.P42P 0.11 TCGA-C5-A3HF-01 X 53172259 53172259 G A LINC01155 RNA 0.23 TCGA-C5-A3HF-01 X 67867543 67867543 G A STARD8 5'Flank 0.20 TCGA-C5-A7CG-01 10 35897248 35897248 C T GJD4 Silent p.R269R 0.20 TCGA-C5-A7CG-01 10 81680522 81680522 C T MBL1P RNA 0.27 TCGA-C5-A7CG-01 10 87484146 87484146 G A GRID1 Silent p.S607S 0.13 TCGA-C5-A7CG-01 11 104869611 104869611 C T CASP5 Splice_Site p.X379_splice 0.10 TCGA-C5-A7CG-01 11 113934923 113934923 G A ZBTB16 Missense_Mutation p.E301K 0.20 tolerated(0.12) benign(0.057) TCGA-C5-A7CG-01 11 3109287 3109287 T CC OSBPL5 3'UTR 0.35 TCGA-C5-A7CG-01 11 89891408 89891408 T C NAALAD2 Splice_Site p.X297_splice 0.15 TCGA-C5-A7CG-01 12 113369760 113369760 G A RP1-71H24.1 Intron 0.09 TCGA-C5-A7CG-01 12 11546154 11546154 T A PRB2 Silent p.P286P 0.08 TCGA-C5-A7CG-01 12 4919592 4919592 G A KCNA6 Missense_Mutation p.E129K 0.24 deleterious(0.01) benign(0.367) TCGA-C5-A7CG-01 13 102375254 102375254 G A FGF14 Missense_Mutation p.T229M 0.10 tolerated(0.07) possibly_damaging(0.888) TCGA-C5-A7CG-01 13 53313888 53313888 T C LECT1 5'UTR 0.22 TCGA-C5-A7CG-01 14 100135303 100135303 C T HHIPL1 Intron 0.29 TCGA-C5-A7CG-01 14 45584513 45584513 A T PRPF39 3'UTR 0.10 TCGA-C5-A7CG-01 15 25615855 25615855 C A UBE3A Missense_Mutation p.G492V 0.41 deleterious(0) benign(0.119) TCGA-C5-A7CG-01 15 40661140 40661140 C T DISP2 Missense_Mutation p.R943C 0.22 deleterious(0.05) benign(0.013) TCGA-C5-A7CG-01 16 19639018 19639018 C T C16orf62 Missense_Mutation p.A514V 0.15 deleterious(0) probably_damaging(0.961) TCGA-C5-A7CG-01 16 71483020 71483020 G A ZNF23 Missense_Mutation p.T303I 0.44 deleterious(0) probably_damaging(1) TCGA-C5-A7CG-01 17 10398340 10398340 G T MYH1 Missense_Mutation p.Q1792K 0.16 deleterious(0.04) benign(0.314) TCGA-C5-A7CG-01 17 1264468 1264468 T C YWHAE Missense_Mutation p.T166A 0.22 deleterious_low_confidence(0) benign(0.081) TCGA-C5-A7CG-01 17 19458952 19458954 CTC - SLC47A1 In_Frame_Del p.L231del 0.29 TCGA-C5-A7CG-01 17 43315977 43315977 G A FMNL1 Missense_Mutation p.R314Q 0.26 tolerated(0.09) unknown(0) TCGA-C5-A7CG-01 17 71281560 71281560 C T CDC42EP4 3'UTR 0.14 TCGA-C5-A7CG-01 17 71380101 71380101 C T SDK2 Missense_Mutation p.R1540Q 0.30 tolerated(0.24) benign(0.386) TCGA-C5-A7CG-01 18 72114391 72114391 C T FAM69C Missense_Mutation p.R109H 0.30 tolerated(0.06) benign(0.02) TCGA-C5-A7CG-01 19 21910658 21910661 CACA - ZNF100 Frame_Shift_Del p.S151Rfs*14 0.23 TCGA-C5-A7CG-01 19 36018715 36018715 C T SBSN Missense_Mutation p.D157N 0.31 tolerated(0.4) benign(0) TCGA-C5-A7CG-01 19 36322568 36322568 C T NPHS1 Missense_Mutation p.R1088Q 0.09 deleterious(0.04) benign(0.003) TCGA-C5-A7CG-01 1 114640467 114640467 C T SYT6 Missense_Mutation p.R381H 0.21 deleterious(0.03) probably_damaging(0.987) TCGA-C5-A7CG-01 1 156811515 156811515 G A INSRR Missense_Mutation p.R1157C 0.13 deleterious(0) probably_damaging(1) TCGA-C5-A7CG-01 1 168218682 168218682 C T SFT2D2 3'UTR 0.47 TCGA-C5-A7CG-01 1 19422038 19422052 CCAGGTTTAGGGTCC - UBR4 Splice_Site p.X4538_splice 0.19 TCGA-C5-A7CG-01 1 196971786 196971786 G A CFHR5 Missense_Mutation p.R441H 0.27 tolerated(0.27) benign(0.001) TCGA-C5-A7CG-01 1 218520199 218520200 - C TGFB2 Frame_Shift_Ins p.E55Rfs*5 0.26 TCGA-C5-A7CG-01 1 26394009 26394009 C T TRIM63 5'UTR 0.31 TCGA-C5-A7CG-01 1 38277022 38277022 C T MTF1 3'UTR 0.11 TCGA-C5-A7CG-01 20 21686349 21686349 G A PAX1 5'UTR 0.26 TCGA-C5-A7CG-01 20 33033187 33033188 GG - ITCH Frame_Shift_Del p.R395Qfs*3 0.24 TCGA-C5-A7CG-01 20 61431820 61431820 A C MRGBP 3'UTR 0.16 TCGA-C5-A7CG-01 21 41447003 41447003 G A DSCAM Missense_Mutation p.R1617W 0.12 deleterious(0) probably_damaging(0.987) TCGA-C5-A7CG-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.64 probably_damaging(1) TCGA-C5-A7CG-01 2 141625763 141625763 C T LRP1B Silent p.G1413G 0.19 TCGA-C5-A7CG-01 2 27684142 27684142 G A IFT172 Silent p.Y812Y 0.14 TCGA-C5-A7CG-01 2 32740651 32740651 C G BIRC6 Missense_Mutation p.H3721Q 0.31 possibly_damaging(0.806) TCGA-C5-A7CG-01 3 170875424 170875424 G A TNIK Missense_Mutation p.T349M 0.09 deleterious(0.01) unknown(0) TCGA-C5-A7CG-01 3 47037080 47037080 A G NBEAL2 Missense_Mutation p.T619A 0.24 tolerated(0.81) benign(0.001) TCGA-C5-A7CG-01 4 122872779 122872779 C T TRPC3 Silent p.P19P 0.33 TCGA-C5-A7CG-01 4 153268138 153268138 G A FBXW7 Nonsense_Mutation p.R224* 0.30 TCGA-C5-A7CG-01 4 187554882 187554882 G - FAT1 Frame_Shift_Del p.L1427Sfs*20 0.26 TCGA-C5-A7CG-01 4 2632761 2632761 G A FAM193A Silent p.S10S 0.45 TCGA-C5-A7CG-01 5 179203008 179203008 C - MAML1 3'UTR 0.24 TCGA-C5-A7CG-01 5 37307504 37307504 G C NUP155 Missense_Mutation p.S933C 0.18 tolerated(1) benign(0.009) TCGA-C5-A7CG-01 5 54403737 54403737 C T GZMA Missense_Mutation p.R111C 0.13 tolerated(0.07) possibly_damaging(0.704) TCGA-C5-A7CG-01 6 107391662 107391662 C A BEND3 Nonsense_Mutation p.E245* 0.23 TCGA-C5-A7CG-01 6 146480687 146480687 G A GRM1 Missense_Mutation p.A302T 0.21 deleterious(0) probably_damaging(0.978) TCGA-C5-A7CG-01 6 159621085 159621085 G A FNDC1 Missense_Mutation p.R121H 0.13 deleterious(0.04) unknown(0) TCGA-C5-A7CG-01 6 37138993 37138993 G A PIM1 Silent p.E111E 0.14 TCGA-C5-A7CG-01 6 3850639 3850655 GCGCACGGTGCGGGTGC - FAM50B Frame_Shift_Del p.R199Qfs*69 0.27 TCGA-C5-A7CG-01 6 84290271 84290271 C T SNAP91 Missense_Mutation p.G733R 0.18 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CG-01 6 84884516 84884516 T A KIAA1009 Missense_Mutation p.E652V 0.26 tolerated(0.31) probably_damaging(0.917) TCGA-C5-A7CG-01 7 100014776 100014776 G A ZCWPW1 Missense_Mutation p.T131I 0.11 deleterious(0.05) benign(0.08) TCGA-C5-A7CG-01 7 100279258 100279258 C T GIGYF1 3'UTR 0.34 TCGA-C5-A7CG-01 7 43283485 43283485 C T HECW1 5'UTR 0.27 TCGA-C5-A7CG-01 8 145694209 145694209 C T KIFC2 Missense_Mutation p.R369W 0.16 deleterious(0) possibly_damaging(0.8) TCGA-C5-A7CG-01 8 22089519 22089519 G A PHYHIP 5'UTR 0.29 TCGA-C5-A7CG-01 9 108110672 108110672 C T SLC44A1 Missense_Mutation p.S147F 0.57 tolerated(0.32) possibly_damaging(0.547) TCGA-C5-A7CG-01 9 138656934 138656934 C T KCNT1 Missense_Mutation p.R365C 0.09 deleterious(0) possibly_damaging(0.841) TCGA-C5-A7CG-01 9 2193572 2193572 G A SMARCA2 3'UTR 0.07 TCGA-C5-A7CG-01 9 6460622 6460622 C T UHRF2 Nonsense_Mutation p.R232* 0.10 TCGA-C5-A7CG-01 X 102318603 102318603 G A BEX1 5'UTR 0.21 TCGA-C5-A7CG-01 X 12156955 12156955 G A FRMPD4 5'UTR 0.36 TCGA-C5-A7CG-01 X 135763034 135763034 A G ARHGEF6 Silent p.G520G 0.18 TCGA-C5-A7CG-01 X 15509340 15509340 C T PIR Missense_Mutation p.R14Q 0.19 tolerated(0.65) benign(0) TCGA-C5-A7CG-01 X 48382321 48382321 G A EBP Silent p.A54A 0.15 TCGA-C5-A7CG-01 X 67272420 67272420 C T OPHN1 Silent p.R779R 0.11 TCGA-C5-A7CH-01 10 11375589 11375589 G A CELF2 3'UTR 0.51 TCGA-C5-A7CH-01 10 135015330 135015330 C T KNDC1 Silent p.A1105A 0.30 TCGA-C5-A7CH-01 10 43869163 43869163 T C FXYD4 5'UTR 0.05 TCGA-C5-A7CH-01 10 75530081 75530081 G A SEC24C Missense_Mutation p.R969Q 0.26 deleterious(0) probably_damaging(0.92) TCGA-C5-A7CH-01 11 100861335 100861335 C T ARHGAP42 3'UTR 0.41 TCGA-C5-A7CH-01 11 113146829 113146829 G C NCAM1 3'Flank 0.17 TCGA-C5-A7CH-01 11 128359203 128359203 G A ETS1 Silent p.L173L 0.19 TCGA-C5-A7CH-01 11 45992778 45992778 A G PHF21A Silent p.A167A 0.20 TCGA-C5-A7CH-01 11 55432790 55432790 A T OR4C6 Missense_Mutation p.S50C 0.15 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-C5-A7CH-01 11 55735637 55735637 C T OR10AG1 Silent p.T101T 0.16 TCGA-C5-A7CH-01 11 59568757 59568757 G A STX3 3'UTR 0.31 TCGA-C5-A7CH-01 11 60183703 60183703 C T MS4A14 Missense_Mutation p.T454I 0.14 deleterious(0.02) benign(0.093) TCGA-C5-A7CH-01 11 65273634 65273635 - CTG MALAT1 RNA 0.47 TCGA-C5-A7CH-01 11 72470276 72470276 C T STARD10 Intron 0.18 TCGA-C5-A7CH-01 11 78523216 78523216 C T TENM4 Silent p.T643T 0.12 TCGA-C5-A7CH-01 12 108043228 108043228 G A BTBD11 Intron 0.77 TCGA-C5-A7CH-01 12 2788801 2788801 C T CACNA1C Silent p.T1809T 0.30 TCGA-C5-A7CH-01 12 31577564 31577564 C T DENND5B Missense_Mutation p.E766K 0.23 tolerated(0.09) probably_damaging(0.947) TCGA-C5-A7CH-01 12 52470838 52470838 T C C12orf44 Missense_Mutation p.V174A 0.24 tolerated(0.1) benign(0.3) TCGA-C5-A7CH-01 12 53805352 53805353 - C SP1 3'UTR 0.08 TCGA-C5-A7CH-01 12 56510565 56510565 C G RPL41 5'UTR 0.19 TCGA-C5-A7CH-01 12 56598412 56598412 G A RNF41 3'UTR 0.15 TCGA-C5-A7CH-01 12 69053549 69053549 G A RAP1B 3'UTR 0.32 TCGA-C5-A7CH-01 13 94197569 94197569 G C GPC6 Missense_Mutation p.E72Q 0.10 deleterious(0) probably_damaging(0.964) TCGA-C5-A7CH-01 14 31355293 31355293 G C COCH Missense_Mutation p.E418Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CH-01 14 47310661 47310661 G A MDGA2 3'UTR 0.18 TCGA-C5-A7CH-01 14 76965111 76965111 G A ESRRB Intron 0.06 TCGA-C5-A7CH-01 15 102516423 102516423 C T WASH3P 3'Flank 0.05 TCGA-C5-A7CH-01 15 34529007 34529007 C T SLC12A6 Missense_Mutation p.D982N 0.70 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A7CH-01 15 49421674 49421674 C A COPS2 Missense_Mutation p.K383N 0.46 deleterious(0.04) benign(0.022) TCGA-C5-A7CH-01 15 78882913 78882913 G C CHRNA5 Missense_Mutation p.E394Q 0.26 tolerated(0.28) benign(0.088) TCGA-C5-A7CH-01 16 10862756 10862756 G A TVP23A 3'UTR 0.60 TCGA-C5-A7CH-01 16 1997214 1997214 G A RPL3L Silent p.T223T 0.09 TCGA-C5-A7CH-01 16 46990426 46990426 T C DNAJA2 3'UTR 0.22 TCGA-C5-A7CH-01 16 71883948 71883949 AT - ATXN1L Frame_Shift_Del p.M103Efs*8 0.15 TCGA-C5-A7CH-01 17 16342452 16342452 G A TRPV2 3'Flank 0.08 TCGA-C5-A7CH-01 17 21215501 21215501 G A MAP2K3 Silent p.P274P 0.08 TCGA-C5-A7CH-01 17 27043038 27043038 G A RAB34 Missense_Mutation p.S119L 0.23 tolerated(0.2) possibly_damaging(0.64) TCGA-C5-A7CH-01 17 43340706 43340706 G A SPATA32 5'Flank 0.50 TCGA-C5-A7CH-01 17 78367415 78367415 G A RNF213 3'UTR 0.82 TCGA-C5-A7CH-01 17 8701915 8701915 G C MFSD6L Missense_Mutation p.S175C 0.23 deleterious(0.02) probably_damaging(0.935) TCGA-C5-A7CH-01 18 55143878 55143878 C T ONECUT2 Missense_Mutation p.R480C 0.17 deleterious(0) probably_damaging(1) TCGA-C5-A7CH-01 19 11106940 11106940 C T SMARCA4 Missense_Mutation p.R549C 0.13 probably_damaging(0.999) TCGA-C5-A7CH-01 19 14208228 14208228 G A PRKACA Missense_Mutation p.P237L 0.33 deleterious(0) probably_damaging(0.99) TCGA-C5-A7CH-01 19 20295210 20295210 G A ZNF486 Missense_Mutation p.E26K 0.20 deleterious(0) probably_damaging(0.989) TCGA-C5-A7CH-01 19 37383799 37383799 C A ZNF829 Intron 0.28 TCGA-C5-A7CH-01 19 38948806 38948806 T C RYR1 Silent p.L681L 0.12 TCGA-C5-A7CH-01 19 44096903 44096903 C T IRGQ Missense_Mutation p.G383R 0.10 deleterious(0.05) probably_damaging(0.912) TCGA-C5-A7CH-01 19 44126801 44126801 G A CADM4 3'UTR 0.16 TCGA-C5-A7CH-01 19 51918168 51918168 G T SIGLEC10 Missense_Mutation p.L509I 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-C5-A7CH-01 1 112029268 112029268 G C ADORA3 Nonsense_Mutation p.S271* 0.47 TCGA-C5-A7CH-01 1 145592732 145592732 G A POLR3C Silent p.F521F 0.17 TCGA-C5-A7CH-01 1 158637785 158637785 T G SPTA1 Missense_Mutation p.K634T 0.30 deleterious(0.03) benign(0.201) TCGA-C5-A7CH-01 1 185880836 185880836 A C HMCN1 Missense_Mutation p.H275P 0.18 benign(0) TCGA-C5-A7CH-01 1 220179484 220179484 G A EPRS Silent p.D638D 0.08 TCGA-C5-A7CH-01 1 22848902 22848902 G C ZBTB40 Missense_Mutation p.E1082Q 0.60 tolerated(0.05) benign(0.01) TCGA-C5-A7CH-01 1 44871090 44871090 C T RNF220 5'UTR 0.07 TCGA-C5-A7CH-01 1 8921484 8921484 C T ENO1 Missense_Mutation p.E414K 0.28 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-C5-A7CH-01 20 44571747 44571747 C T PCIF1 Missense_Mutation p.P229S 0.17 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CH-01 21 46226693 46226693 G C SUMO3 3'UTR 0.38 TCGA-C5-A7CH-01 2 125671718 125671718 G A CNTNAP5 Missense_Mutation p.M1258I 0.25 tolerated(0.45) probably_damaging(0.989) TCGA-C5-A7CH-01 2 168099826 168099826 A G XIRP2 Missense_Mutation p.K642E 0.21 possibly_damaging(0.856) TCGA-C5-A7CH-01 2 170103431 170103431 G A LRP2 Missense_Mutation p.P992S 0.28 probably_damaging(0.994) TCGA-C5-A7CH-01 2 170551020 170551020 G C PHOSPHO2 5'UTR 0.28 TCGA-C5-A7CH-01 2 207169840 207169840 C T ZDBF2 Silent p.N196N 0.24 TCGA-C5-A7CH-01 2 3217970 3217970 C T TSSC1 Missense_Mutation p.D156N 0.32 tolerated(0.06) probably_damaging(0.956) TCGA-C5-A7CH-01 2 3749212 3749212 C T ALLC Missense_Mutation p.L321F 0.19 deleterious(0.02) possibly_damaging(0.798) TCGA-C5-A7CH-01 2 73495991 73495991 C A FBXO41 Silent p.A256A 0.33 TCGA-C5-A7CH-01 2 86707395 86707395 G - KDM3A Frame_Shift_Del p.G808Afs*3 0.33 TCGA-C5-A7CH-01 3 100712326 100712326 C T ABI3BP 5'UTR 0.57 TCGA-C5-A7CH-01 3 126268567 126268567 G A C3orf22 3'UTR 0.56 TCGA-C5-A7CH-01 3 136196132 136196132 C A STAG1 Missense_Mutation p.R342M 0.30 deleterious(0) possibly_damaging(0.702) TCGA-C5-A7CH-01 3 14548415 14548415 C T GRIP2 RNA 0.21 TCGA-C5-A7CH-01 3 50396227 50396227 C G TMEM115 Missense_Mutation p.E90Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CH-01 3 50596517 50596517 A T C3orf18 3'UTR 0.21 TCGA-C5-A7CH-01 3 57306976 57306976 G A APPL1 3'UTR 0.53 TCGA-C5-A7CH-01 4 156137750 156137750 T G NPY2R 3'UTR 0.66 TCGA-C5-A7CH-01 4 38696441 38696441 G A KLF3 Missense_Mutation p.R257Q 0.84 deleterious(0) probably_damaging(0.992) TCGA-C5-A7CH-01 4 42965046 42965046 C T GRXCR1 Silent p.N174N 0.23 TCGA-C5-A7CH-01 5 150028582 150028582 G T SYNPO Missense_Mutation p.G493W 0.20 deleterious(0) probably_damaging(0.995) TCGA-C5-A7CH-01 5 161576257 161576257 T A GABRG2 Missense_Mutation p.L396M 0.43 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CH-01 6 33690845 33690845 C T IP6K3 Silent p.R295R 0.15 TCGA-C5-A7CH-01 6 35214037 35214037 C T SCUBE3 Missense_Mutation p.S936F 0.12 deleterious(0) probably_damaging(0.987) TCGA-C5-A7CH-01 6 49814315 49814315 A G CRISP1 Missense_Mutation p.V118A 0.48 tolerated(0.22) benign(0.253) TCGA-C5-A7CH-01 7 140374050 140374050 C A ADCK2 Missense_Mutation p.S307Y 0.21 deleterious(0) benign(0.013) TCGA-C5-A7CH-01 7 148863295 148863295 G C ZNF398 Missense_Mutation p.E156Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-C5-A7CH-01 7 151849976 151849976 C T KMT2C Missense_Mutation p.E4114K 0.51 probably_damaging(0.995) TCGA-C5-A7CH-01 7 25176304 25176304 G A C7orf31 Missense_Mutation p.R354C 0.14 deleterious(0.05) benign(0.365) TCGA-C5-A7CH-01 7 47408264 47408264 G C TNS3 Missense_Mutation p.S660C 0.15 tolerated(0.18) benign(0.002) TCGA-C5-A7CH-01 8 2071454 2071454 C G MYOM2 Nonsense_Mutation p.Y1198* 0.07 TCGA-C5-A7CH-01 8 2813245 2813245 C G CSMD1 Missense_Mutation p.R3287T 0.29 benign(0.346) TCGA-C5-A7CH-01 8 4277496 4277496 C A CSMD1 Missense_Mutation p.G132C 0.43 probably_damaging(0.999) TCGA-C5-A7CH-01 8 92032435 92032435 A - TMEM55A Frame_Shift_Del p.L105Sfs*10 0.41 TCGA-C5-A7CH-01 9 129972982 129972982 G A RALGPS1 Intron 0.44 TCGA-C5-A7CH-01 9 94488984 94488984 C A ROR2 Missense_Mutation p.V409F 0.58 deleterious(0.01) possibly_damaging(0.477) TCGA-C5-A7CH-01 X 110574146 110574146 C T DCX Splice_Site p.X392_splice 0.11 TCGA-C5-A7CH-01 X 30270053 30270053 T A MAGEB1 3'UTR 0.16 TCGA-C5-A7CH-01 X 41095685 41095685 T G USP9X 3'UTR 0.39 TCGA-C5-A7CH-01 X 50053360 50053360 C A CCNB3 Missense_Mutation p.L731M 0.04 deleterious(0.02) probably_damaging(0.991) TCGA-C5-A7CH-01 X 54824609 54824609 A T ITIH6 Missense_Mutation p.F12Y 0.22 deleterious(0.04) benign(0.193) TCGA-C5-A7CH-01 X 55047616 55047616 G T ALAS2 Missense_Mutation p.N169K 0.47 deleterious(0) probably_damaging(0.916) TCGA-C5-A7CH-01 X 70468078 70468078 G A ZMYM3 Missense_Mutation p.R637W 0.44 deleterious(0) probably_damaging(0.94) TCGA-C5-A7CH-01 X 70777114 70777114 G C OGT Missense_Mutation p.D464H 0.58 deleterious(0) benign(0.36) TCGA-C5-A7CH-01 X 71347814 71347815 TG - RGAG4 Intron 0.09 TCGA-C5-A7CJ-01 10 115350427 115350427 C G NRAP Silent p.V1622V 0.13 TCGA-C5-A7CJ-01 10 14938928 14938928 G A SUV39H2 Silent p.P87P 0.22 TCGA-C5-A7CJ-01 10 28420622 28420622 T C MPP7 Splice_Site p.X106_splice 0.38 TCGA-C5-A7CJ-01 10 69902782 69902782 G A MYPN Missense_Mutation p.E330K 0.23 deleterious(0) probably_damaging(0.998) TCGA-C5-A7CJ-01 10 72639670 72639670 C A SGPL1 3'UTR 0.26 TCGA-C5-A7CJ-01 11 117395799 117395799 C T DSCAML1 Splice_Site p.X280_splice 0.24 TCGA-C5-A7CJ-01 11 1890113 1890113 G A LSP1 Intron 0.17 TCGA-C5-A7CJ-01 11 18955962 18955962 C T MRGPRX1 Missense_Mutation p.V124I 0.22 tolerated(0.17) benign(0.16) TCGA-C5-A7CJ-01 11 47595183 47595183 C G KBTBD4 Missense_Mutation p.D302H 0.14 deleterious(0.01) probably_damaging(0.968) TCGA-C5-A7CJ-01 11 4790839 4790839 C A OR51F1 Missense_Mutation p.M103I 0.22 deleterious(0.01) possibly_damaging(0.589) TCGA-C5-A7CJ-01 11 65810621 65810621 C T GAL3ST3 Missense_Mutation p.R218H 0.31 tolerated(0.07) possibly_damaging(0.59) TCGA-C5-A7CJ-01 11 67816626 67816626 C T TCIRG1 Silent p.L584L 0.08 TCGA-C5-A7CJ-01 11 7110290 7110290 G T RBMXL2 5'UTR 0.24 TCGA-C5-A7CJ-01 12 108910983 108910983 G A FICD Silent p.P78P 0.24 TCGA-C5-A7CJ-01 12 132514585 132514585 G A EP400 Missense_Mutation p.R1879H 0.24 unknown(0) TCGA-C5-A7CJ-01 12 40745533 40745533 G C LRRK2 Missense_Mutation p.E2192Q 0.17 tolerated(0.5) benign(0.017) TCGA-C5-A7CJ-01 12 81331463 81331463 G C LIN7A Missense_Mutation p.D13E 0.14 tolerated_low_confidence(0.7) benign(0.009) TCGA-C5-A7CJ-01 12 81653368 81653368 C T PPFIA2 3'UTR 0.09 TCGA-C5-A7CJ-01 13 21353998 21353998 C T XPO4 3'UTR 0.27 TCGA-C5-A7CJ-01 13 25451154 25451154 C T RNF17 Missense_Mutation p.H1535Y 0.18 tolerated(0.15) probably_damaging(0.932) TCGA-C5-A7CJ-01 14 102028492 102028492 G A DIO3 Missense_Mutation p.R220Q 0.16 tolerated(0.43) benign(0.005) TCGA-C5-A7CJ-01 14 52735240 52735240 G A PTGDR Silent p.P236P 0.40 TCGA-C5-A7CJ-01 14 95556521 95556521 A C DICER1 3'UTR 0.07 TCGA-C5-A7CJ-01 15 28632828 28632828 A T GOLGA8F Missense_Mutation p.R466W 0.11 tolerated(0.3) benign(0.002) TCGA-C5-A7CJ-01 15 44853738 44853738 T G EIF3J 3'UTR 0.23 TCGA-C5-A7CJ-01 15 45707786 45707787 - ATTTC SPATA5L1 Frame_Shift_Ins p.R551Hfs*43 0.19 TCGA-C5-A7CJ-01 15 49777473 49777473 C T FGF7 3'UTR 0.06 TCGA-C5-A7CJ-01 15 49882154 49882154 G C FAM227B Missense_Mutation p.C52W 0.15 tolerated(0.18) benign(0.265) TCGA-C5-A7CJ-01 15 58838164 58838164 C T LIPC Silent p.H266H 0.10 TCGA-C5-A7CJ-01 15 88576179 88576179 G T NTRK3 Silent p.P498P 0.11 TCGA-C5-A7CJ-01 15 89760507 89760507 G A RLBP1 Nonsense_Mutation p.R64* 0.16 TCGA-C5-A7CJ-01 16 2223241 2223241 G A TRAF7 Missense_Mutation p.E285K 0.11 deleterious(0.01) possibly_damaging(0.859) TCGA-C5-A7CJ-01 16 29818918 29818918 C T MAZ Missense_Mutation p.S271L 0.28 tolerated(0.09) possibly_damaging(0.776) TCGA-C5-A7CJ-01 16 348162 348162 C T AXIN1 Silent p.P448P 0.21 TCGA-C5-A7CJ-01 17 36482459 36482459 C T GPR179 Silent p.Q2331Q 0.21 TCGA-C5-A7CJ-01 17 53077107 53077107 C G STXBP4 Silent p.A134A 0.23 TCGA-C5-A7CJ-01 17 59533881 59533881 C T TBX4 Silent p.S10S 0.17 TCGA-C5-A7CJ-01 17 74324917 74324917 C T PRPSAP1 Missense_Mutation p.R221H 0.19 tolerated(0.09) benign(0.139) TCGA-C5-A7CJ-01 18 29648335 29648335 G A RNF125 Silent p.S229S 0.23 TCGA-C5-A7CJ-01 19 36227608 36227608 G A KMT2B Missense_Mutation p.E2393K 0.19 benign(0.227) TCGA-C5-A7CJ-01 19 4516656 4516656 C T PLIN4 Silent p.T62T 0.06 TCGA-C5-A7CJ-01 19 51563191 51563191 C A KLK13 Silent p.P133P 0.16 TCGA-C5-A7CJ-01 19 7992965 7992965 G A TIMM44 Silent p.V375V 0.17 TCGA-C5-A7CJ-01 1 152084619 152084621 CTC - TCHH In_Frame_Del p.E358del 0.24 TCGA-C5-A7CJ-01 1 152280708 152280708 G T FLG Missense_Mutation p.D2218E 0.26 possibly_damaging(0.739) TCGA-C5-A7CJ-01 1 201031086 201031086 G A CACNA1S Silent p.F1013F 0.23 TCGA-C5-A7CJ-01 1 204951012 204951012 C T NFASC Silent p.N778N 0.09 TCGA-C5-A7CJ-01 1 248402898 248402898 G A OR2M4 Missense_Mutation p.R223Q 0.15 tolerated(0.25) benign(0.015) TCGA-C5-A7CJ-01 1 31660926 31660926 C T NKAIN1 Missense_Mutation p.V55M 0.14 deleterious(0.03) benign(0.409) TCGA-C5-A7CJ-01 1 33147502 33147502 G A RBBP4 3'UTR 0.22 TCGA-C5-A7CJ-01 1 34099119 34099119 G A CSMD2 Silent p.F1661F 0.17 TCGA-C5-A7CJ-01 1 36056287 36056287 C A TFAP2E Missense_Mutation p.F319L 0.13 deleterious(0) probably_damaging(0.942) TCGA-C5-A7CJ-01 1 92789846 92789846 G A RPAP2 Missense_Mutation p.E457K 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-C5-A7CJ-01 20 30193562 30193562 G T ID1 Silent p.P124P 0.21 TCGA-C5-A7CJ-01 20 48250638 48250638 G A B4GALT5 3'UTR 0.16 TCGA-C5-A7CJ-01 21 37618844 37618844 G C DOPEY2 Missense_Mutation p.L1522F 0.16 deleterious(0.03) possibly_damaging(0.831) TCGA-C5-A7CJ-01 21 37619827 37619827 G A DOPEY2 Silent p.K1570K 0.10 TCGA-C5-A7CJ-01 22 19210232 19210232 C G CLTCL1 Missense_Mutation p.R798T 0.24 deleterious(0.04) benign(0.134) TCGA-C5-A7CJ-01 22 25498861 25498861 C T KIAA1671 Intron 0.10 TCGA-C5-A7CJ-01 22 31523358 31523358 G A INPP5J Missense_Mutation p.V175M 0.29 deleterious(0) probably_damaging(0.997) TCGA-C5-A7CJ-01 22 41716682 41716682 G A ZC3H7B Silent p.R6R 0.22 TCGA-C5-A7CJ-01 2 179400032 179400032 C T TTN Silent p.L33770L 0.08 TCGA-C5-A7CJ-01 2 179482768 179482768 C T TTN Silent p.V15770V 0.20 TCGA-C5-A7CJ-01 2 33813412 33813412 A G FAM98A Missense_Mutation p.I171T 0.19 deleterious(0) probably_damaging(0.979) TCGA-C5-A7CJ-01 3 128199904 128199904 G A GATA2 Silent p.F467F 0.19 TCGA-C5-A7CJ-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.17 deleterious(0.04) probably_damaging(0.96) TCGA-C5-A7CJ-01 3 49044174 49044174 G A P4HTM Missense_Mutation p.R509H 0.24 deleterious(0.05) possibly_damaging(0.898) TCGA-C5-A7CJ-01 3 49044293 49044293 G A P4HTM Missense_Mutation p.E549K 0.31 tolerated_low_confidence(0.07) possibly_damaging(0.853) TCGA-C5-A7CJ-01 3 49049889 49049889 G A WDR6 Missense_Mutation p.E338K 0.32 tolerated(0.18) benign(0.019) TCGA-C5-A7CJ-01 3 49049891 49049891 G A WDR6 Silent p.E338E 0.30 TCGA-C5-A7CJ-01 3 49049972 49049972 G A WDR6 Silent p.L365L 0.32 TCGA-C5-A7CJ-01 3 49050409 49050409 G A WDR6 Missense_Mutation p.R511H 0.21 tolerated(0.1) possibly_damaging(0.898) TCGA-C5-A7CJ-01 3 49052061 49052061 G A WDR6 Missense_Mutation p.D968N 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-C5-A7CJ-01 3 99513685 99513685 G A COL8A1 Missense_Mutation p.G314R 0.21 deleterious(0) unknown(0) TCGA-C5-A7CJ-01 4 159568153 159568153 G C RXFP1 Missense_Mutation p.R519T 0.13 deleterious(0.02) possibly_damaging(0.493) TCGA-C5-A7CJ-01 4 38690502 38690502 C T KLF3 Silent p.G118G 0.12 TCGA-C5-A7CJ-01 4 75147263 75147263 C T MTHFD2L Silent p.F309F 0.18 TCGA-C5-A7CJ-01 5 126214052 126214052 C T MARCH3 Missense_Mutation p.R143Q 0.18 deleterious(0) possibly_damaging(0.67) TCGA-C5-A7CJ-01 5 138653340 138653340 A G MATR3 Missense_Mutation p.Y413C 0.13 tolerated(0.17) possibly_damaging(0.781) TCGA-C5-A7CJ-01 5 141335086 141335086 G A PCDH12 Silent p.L777L 0.17 TCGA-C5-A7CJ-01 5 145651103 145651103 C T RBM27 Nonsense_Mutation p.R952* 0.29 TCGA-C5-A7CJ-01 5 19839103 19839103 T A CDH18 5'UTR 0.22 TCGA-C5-A7CJ-01 5 24509922 24509922 C T CDH10 Missense_Mutation p.D337N 0.15 tolerated(0.16) probably_damaging(0.987) TCGA-C5-A7CJ-01 6 112041198 112041198 G A FYN Silent p.D19D 0.25 TCGA-C5-A7CJ-01 6 133111362 133111362 C T SLC18B1 Missense_Mutation p.C78Y 0.17 deleterious(0) benign(0.403) TCGA-C5-A7CJ-01 6 135254073 135254073 G A ALDH8A1 Silent p.T230T 0.16 TCGA-C5-A7CJ-01 6 151673794 151673794 C T AKAP12 Missense_Mutation p.A1423V 0.12 tolerated(0.29) benign(0.044) TCGA-C5-A7CJ-01 6 1612199 1612199 G A FOXC1 Missense_Mutation p.V507M 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-C5-A7CJ-01 6 30691669 30691669 G A TUBB Missense_Mutation p.G277E 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.773) TCGA-C5-A7CJ-01 6 96652875 96652875 C T FUT9 3'UTR 0.25 TCGA-C5-A7CJ-01 7 100146506 100146506 G A AGFG2 Missense_Mutation p.E95K 0.12 deleterious(0) probably_damaging(0.989) TCGA-C5-A7CJ-01 7 150707280 150707280 G A NOS3 Missense_Mutation p.D864N 0.24 deleterious(0) probably_damaging(0.998) TCGA-C5-A7CJ-01 7 150707711 150707711 G C NOS3 Missense_Mutation p.K904N 0.25 deleterious(0) probably_damaging(0.997) TCGA-C5-A7CJ-01 7 150707745 150707745 G T NOS3 Nonsense_Mutation p.E916* 0.31 TCGA-C5-A7CJ-01 7 150707765 150707765 G A NOS3 Silent p.A922A 0.32 TCGA-C5-A7CJ-01 7 16255786 16255786 G A ISPD Nonsense_Mutation p.Q386* 0.25 TCGA-C5-A7CJ-01 8 105235920 105235920 G T RIMS2 Intron 0.20 TCGA-C5-A7CJ-01 8 110100474 110100474 C T TRHR Silent p.L245L 0.15 TCGA-C5-A7CJ-01 8 120628593 120628593 C A ENPP2 Missense_Mutation p.G230V 0.25 deleterious(0) probably_damaging(0.969) TCGA-C5-A7CJ-01 8 144400005 144400005 C T TOP1MT Silent p.T406T 0.08 TCGA-C5-A7CJ-01 8 39142357 39142357 C T ADAM32 3'UTR 0.11 TCGA-C5-A7CJ-01 8 75278024 75278024 C A GDAP1 3'UTR 0.26 TCGA-C5-A7CJ-01 8 77690584 77690584 G A ZFHX4 Silent p.R1078R 0.19 TCGA-C5-A7CJ-01 9 101748164 101748164 G T COL15A1 Nonsense_Mutation p.E140* 0.19 TCGA-C5-A7CJ-01 9 116359190 116359190 A G RGS3 Missense_Mutation p.Y1185C 0.19 deleterious(0) probably_damaging(0.998) TCGA-C5-A7CJ-01 9 35313980 35313980 G A UNC13B Silent p.L387L 0.08 TCGA-C5-A7CJ-01 9 72333147 72333147 G A PTAR1 3'UTR 0.33 TCGA-C5-A7CJ-01 9 78938202 78938202 G A PCSK5 Missense_Mutation p.R1419K 0.12 tolerated(1) benign(0.001) TCGA-C5-A7CJ-01 X 148798460 148798460 C T MAGEA11 3'UTR 0.19 TCGA-C5-A7CJ-01 X 54263681 54263681 C T WNK3 Missense_Mutation p.E1440K 0.17 deleterious(0.01) possibly_damaging(0.533) TCGA-C5-A7CK-01 10 111652824 111652824 T C XPNPEP1 Missense_Mutation p.I86V 0.42 tolerated(0.15) benign(0.002) TCGA-C5-A7CK-01 10 11503083 11503083 C A USP6NL 3'UTR 0.32 TCGA-C5-A7CK-01 10 115423728 115423728 C G NRAP 5'UTR 0.33 TCGA-C5-A7CK-01 10 127414249 127414249 A G EDRF1 Splice_Site p.X212_splice 0.17 TCGA-C5-A7CK-01 10 24835135 24835135 C G KIAA1217 Nonsense_Mutation p.S1905* 0.33 TCGA-C5-A7CK-01 10 70670829 70670829 G A DDX50 Missense_Mutation p.G156R 0.27 deleterious(0.03) possibly_damaging(0.713) TCGA-C5-A7CK-01 10 81373001 81373001 C G SFTPA1 Missense_Mutation p.Q132E 0.40 tolerated(0.14) benign(0.122) TCGA-C5-A7CK-01 10 86274898 86274898 G A CCSER2 3'UTR 0.41 TCGA-C5-A7CK-01 10 93851621 93851621 G C CPEB3 Missense_Mutation p.I551M 0.08 deleterious(0) possibly_damaging(0.86) TCGA-C5-A7CK-01 11 111177199 111177199 G A COLCA2 5'UTR 0.23 TCGA-C5-A7CK-01 11 114167330 114167330 C T NNMT Missense_Mutation p.R18W 0.30 deleterious(0) possibly_damaging(0.802) TCGA-C5-A7CK-01 11 123448268 123448268 G A GRAMD1B Missense_Mutation p.G73S 0.22 tolerated(0.52) benign(0.088) TCGA-C5-A7CK-01 11 124310821 124310821 T A OR8B8 Missense_Mutation p.H54L 0.06 deleterious_low_confidence(0) benign(0.13) TCGA-C5-A7CK-01 11 134252735 134252735 G A B3GAT1 Missense_Mutation p.R263W 0.21 deleterious(0) benign(0.042) TCGA-C5-A7CK-01 11 45203391 45203391 C T PRDM11 Missense_Mutation p.T25M 0.33 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-C5-A7CK-01 11 45671730 45671730 G A CHST1 Silent p.R248R 0.40 TCGA-C5-A7CK-01 11 55062922 55062922 A G TRIM51HP Intron 0.20 TCGA-C5-A7CK-01 11 55927228 55927228 C A OR8K5 Missense_Mutation p.C189F 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.722) TCGA-C5-A7CK-01 11 57003977 57003977 G A APLNR Missense_Mutation p.R168C 0.33 deleterious(0) probably_damaging(1) TCGA-C5-A7CK-01 11 58034493 58034493 T G OR10W1 Missense_Mutation p.I280L 0.20 deleterious(0.01) benign(0.17) TCGA-C5-A7CK-01 11 59620777 59620777 C T TCN1 Missense_Mutation p.R380H 0.24 deleterious(0) benign(0.115) TCGA-C5-A7CK-01 11 60900771 60900771 C T VPS37C Missense_Mutation p.D102N 0.32 tolerated(0.46) benign(0.302) TCGA-C5-A7CK-01 11 60901632 60901632 C T VPS37C Silent p.R47R 0.42 TCGA-C5-A7CK-01 11 8117170 8117170 C T TUB Missense_Mutation p.R230W 0.27 deleterious(0.04) possibly_damaging(0.599) TCGA-C5-A7CK-01 11 94759882 94759882 C T KDM4E Silent p.S387S 0.29 TCGA-C5-A7CK-01 12 108642798 108642798 G T WSCD2 3'UTR 0.26 TCGA-C5-A7CK-01 12 112605159 112605159 C A HECTD4 Missense_Mutation p.D4020Y 0.25 probably_damaging(0.996) TCGA-C5-A7CK-01 12 13243620 13243620 G A GSG1 Missense_Mutation p.P61S 0.15 deleterious(0.01) probably_damaging(1) TCGA-C5-A7CK-01 12 14613464 14613464 G C ATF7IP Missense_Mutation p.V732L 0.32 deleterious_low_confidence(0.05) unknown(0) TCGA-C5-A7CK-01 12 19282988 19282988 G A PLEKHA5 Silent p.E31E 0.27 TCGA-C5-A7CK-01 12 3736711 3736711 C T EFCAB4B Missense_Mutation p.R608Q 0.32 tolerated(0.06) probably_damaging(0.987) TCGA-C5-A7CK-01 12 44782997 44782997 T A TMEM117 3'UTR 0.45 TCGA-C5-A7CK-01 12 45833560 45833560 G A RP11-438E8.2 5'Flank 0.23 TCGA-C5-A7CK-01 12 46759016 46759016 C G SLC38A2 Intron 0.30 TCGA-C5-A7CK-01 12 53856284 53856284 C T PCBP2 Missense_Mutation p.P175L 0.48 deleterious(0.02) benign(0.008) TCGA-C5-A7CK-01 12 54793645 54793646 - A ITGA5 Intron 0.15 TCGA-C5-A7CK-01 12 6128901 6128901 T A VWF Missense_Mutation p.D1228V 0.25 tolerated(0.07) possibly_damaging(0.486) TCGA-C5-A7CK-01 12 78562612 78562612 G C NAV3 Missense_Mutation p.Q1649H 0.31 tolerated(0.16) probably_damaging(0.93) TCGA-C5-A7CK-01 12 8073672 8073672 C G SLC2A3 3'UTR 0.27 TCGA-C5-A7CK-01 12 82752432 82752432 G A METTL25 Missense_Mutation p.A30T 0.10 tolerated(0.35) benign(0.022) TCGA-C5-A7CK-01 13 101264734 101264734 C T TMTC4 Missense_Mutation p.R661K 0.18 tolerated(0.47) benign(0.012) TCGA-C5-A7CK-01 13 101264747 101264747 C T TMTC4 Missense_Mutation p.E657K 0.20 tolerated(0.08) possibly_damaging(0.84) TCGA-C5-A7CK-01 13 109792748 109792748 G A MYO16 Silent p.A1374A 0.22 TCGA-C5-A7CK-01 13 24868965 24868965 G A SPATA13 Missense_Mutation p.D1057N 0.24 tolerated(0.07) benign(0.026) TCGA-C5-A7CK-01 13 32937315 32937315 G A BRCA2 Splice_Site p.X2659_splice 0.34 TCGA-C5-A7CK-01 13 39542567 39542567 C T STOML3 Silent p.E207E 0.54 TCGA-C5-A7CK-01 13 44455579 44455579 C T LACC1 Missense_Mutation p.T153I 0.18 deleterious(0.03) benign(0.442) TCGA-C5-A7CK-01 13 48951087 48951088 AA - RB1 Frame_Shift_Del p.R418Sfs*9 0.26 TCGA-C5-A7CK-01 13 84456317 84456317 A T SLITRK1 5'UTR 0.20 TCGA-C5-A7CK-01 13 96485211 96485211 C G UGGT2 Missense_Mutation p.D1500H 0.16 tolerated(0.11) benign(0.352) TCGA-C5-A7CK-01 13 96485250 96485250 C G UGGT2 Missense_Mutation p.E1487Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-C5-A7CK-01 14 104152160 104152160 C T KLC1 Intron 0.44 TCGA-C5-A7CK-01 14 32560000 32560000 T C ARHGAP5 Missense_Mutation p.V42A 0.10 deleterious(0) probably_damaging(0.952) TCGA-C5-A7CK-01 14 36005297 36005297 C T INSM2 3'UTR 0.30 TCGA-C5-A7CK-01 14 42077623 42077623 G A LRFN5 5'UTR 0.13 TCGA-C5-A7CK-01 14 47566263 47566263 G A MDGA2 Missense_Mutation p.T330I 0.26 deleterious(0.04) possibly_damaging(0.628) TCGA-C5-A7CK-01 14 50044492 50044492 G A RPS29 3'UTR 0.24 TCGA-C5-A7CK-01 14 52194513 52194513 C T FRMD6 Silent p.L545L 0.46 TCGA-C5-A7CK-01 14 52195192 52195192 C G FRMD6 3'UTR 0.25 TCGA-C5-A7CK-01 14 52195278 52195278 C T FRMD6 3'UTR 0.37 TCGA-C5-A7CK-01 14 52195390 52195390 C T FRMD6 3'UTR 0.26 TCGA-C5-A7CK-01 14 67854156 67854156 G A PLEK2 Nonsense_Mutation p.Q318* 0.26 TCGA-C5-A7CK-01 14 75266120 75266120 C T YLPM1 Nonsense_Mutation p.R1374* 0.25 TCGA-C5-A7CK-01 14 77808308 77808308 C G TMED8 Missense_Mutation p.E262Q 0.47 deleterious(0) probably_damaging(1) TCGA-C5-A7CK-01 15 45007645 45007645 C G B2M Nonsense_Mutation p.S31* 0.38 TCGA-C5-A7CK-01 15 50271846 50271846 G C ATP8B4 Silent p.L334L 0.30 TCGA-C5-A7CK-01 15 74486261 74486261 G T STRA6 Silent p.I239I 0.41 TCGA-C5-A7CK-01 15 90226789 90226789 A G PEX11A Missense_Mutation p.L188P 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A7CK-01 15 90777075 90777075 C T CIB1 Missense_Mutation p.E15K 0.45 deleterious(0.03) possibly_damaging(0.831) TCGA-C5-A7CK-01 16 18849988 18849988 G C SMG1 Silent p.V2323V 0.13 TCGA-C5-A7CK-01 16 31044969 31044969 A G STX4 5'UTR 0.19 TCGA-C5-A7CK-01 16 4029235 4029235 C T ADCY9 Missense_Mutation p.R854H 0.45 tolerated(0.55) benign(0.001) TCGA-C5-A7CK-01 16 46615574 46615574 G A SHCBP1 3'UTR 0.32 TCGA-C5-A7CK-01 16 70055830 70055830 G C PDXDC2P RNA 0.21 TCGA-C5-A7CK-01 17 13972907 13972907 C T COX10 5'UTR 0.09 TCGA-C5-A7CK-01 17 15602957 15602957 G A ZNF286A 5'Flank 0.32 TCGA-C5-A7CK-01 17 18219778 18219778 C T SMCR8 Silent p.Y225Y 0.14 TCGA-C5-A7CK-01 17 37366914 37366914 C T STAC2 3'UTR 0.29 TCGA-C5-A7CK-01 17 40850830 40850830 C G CNTNAP1 Missense_Mutation p.P1353A 0.32 tolerated_low_confidence(0.71) benign(0.002) TCGA-C5-A7CK-01 17 4805688 4805688 T A C17orf107 3'UTR 0.13 TCGA-C5-A7CK-01 17 74003592 74003592 G A EVPL Silent p.N1898N 0.15 TCGA-C5-A7CK-01 17 7495874 7495874 G A FXR2 Silent p.R591R 0.25 TCGA-C5-A7CK-01 17 79564302 79564302 C T NPLOC4 Missense_Mutation p.R321Q 0.20 tolerated(0.51) possibly_damaging(0.908) TCGA-C5-A7CK-01 18 14105758 14105758 C T ZNF519 Missense_Mutation p.G261R 0.20 deleterious(0.03) probably_damaging(0.949) TCGA-C5-A7CK-01 18 25565020 25565020 G A CDH2 Missense_Mutation p.A718V 0.29 deleterious(0) benign(0.359) TCGA-C5-A7CK-01 18 2931377 2931377 G T LPIN2 Missense_Mutation p.Q445K 0.19 tolerated(0.08) probably_damaging(0.968) TCGA-C5-A7CK-01 18 32438352 32438352 C T DTNA Missense_Mutation p.R459W 0.50 deleterious(0) probably_damaging(0.998) TCGA-C5-A7CK-01 18 50683791 50683791 C T DCC Nonsense_Mutation p.R443* 0.65 TCGA-C5-A7CK-01 19 1012550 1012550 G A TMEM259 Silent p.I210I 0.08 TCGA-C5-A7CK-01 19 15292550 15292550 G A NOTCH3 Missense_Mutation p.P877S 0.22 deleterious(0.02) benign(0.013) TCGA-C5-A7CK-01 19 2805036 2805036 G C THOP1 Silent p.L204L 0.20 TCGA-C5-A7CK-01 19 36606994 36606994 C G TBCB Missense_Mutation p.L56V 0.19 tolerated(0.62) benign(0.078) TCGA-C5-A7CK-01 19 40895762 40895762 G C HIPK4 Silent p.V16V 0.13 TCGA-C5-A7CK-01 19 41096211 41096211 G A SHKBP1 Missense_Mutation p.E551K 0.18 deleterious(0) probably_damaging(0.988) TCGA-C5-A7CK-01 19 42566907 42566907 C T GRIK5 Intron 0.08 TCGA-C5-A7CK-01 19 46289788 46289788 C T DMWD Missense_Mutation p.M322I 0.23 deleterious(0.01) benign(0.003) TCGA-C5-A7CK-01 19 50957284 50957284 C T MYBPC2 Missense_Mutation p.T586M 0.14 tolerated(0.35) possibly_damaging(0.508) TCGA-C5-A7CK-01 19 51875736 51875736 G A NKG7 Silent p.F18F 0.14 TCGA-C5-A7CK-01 19 51961667 51961667 G A SIGLEC8 5'UTR 0.24 TCGA-C5-A7CK-01 19 52714587 52714587 C G PPP2R1A Missense_Mutation p.I115M 0.07 deleterious(0) possibly_damaging(0.791) TCGA-C5-A7CK-01 19 53059187 53059187 G C ZNF808 3'UTR 0.09 TCGA-C5-A7CK-01 19 55086222 55086222 C G LILRA2 Nonsense_Mutation p.S126* 0.13 TCGA-C5-A7CK-01 19 56423094 56423094 C T NLRP13 Missense_Mutation p.E697K 0.16 tolerated(0.22) benign(0.095) TCGA-C5-A7CK-01 19 56423238 56423238 C T NLRP13 Missense_Mutation p.D649N 0.22 tolerated(1) benign(0.004) TCGA-C5-A7CK-01 19 56423490 56423490 C G NLRP13 Missense_Mutation p.E565Q 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-C5-A7CK-01 19 58513717 58513717 C G CTD-2368P22.1 Nonsense_Mutation p.S80* 0.31 TCGA-C5-A7CK-01 19 9014541 9014541 A G MUC16 Missense_Mutation p.Y12812H 0.17 probably_damaging(0.973) TCGA-C5-A7CK-01 1 101338128 101338128 A C EXTL2 3'UTR 0.25 TCGA-C5-A7CK-01 1 101706568 101706568 A G S1PR1 3'UTR 0.23 TCGA-C5-A7CK-01 1 144013973 144013973 A T SRGAP2B RNA 0.07 TCGA-C5-A7CK-01 1 151847321 151847321 C A THEM4 3'UTR 0.12 TCGA-C5-A7CK-01 1 152850902 152850902 T C SMCP 5'UTR 0.25 TCGA-C5-A7CK-01 1 155899543 155899543 G A KIAA0907 Missense_Mutation p.T115I 0.17 tolerated(0.16) probably_damaging(0.93) TCGA-C5-A7CK-01 1 156352078 156352078 A G RHBG Intron 0.18 TCGA-C5-A7CK-01 1 156352108 156352108 C G RHBG Intron 0.18 TCGA-C5-A7CK-01 1 161565354 161565354 G A FCGR2C Missense_Mutation p.D4N 0.19 unknown(0) TCGA-C5-A7CK-01 1 19411033 19411033 C T UBR4 Silent p.P4991P 0.31 TCGA-C5-A7CK-01 1 226829634 226829634 G A ITPKB Silent p.I813I 0.20 TCGA-C5-A7CK-01 1 227618414 227618414 G A CTD-2090I13.1 RNA 0.24 TCGA-C5-A7CK-01 1 227618564 227618564 G C CTD-2090I13.1 RNA 0.14 TCGA-C5-A7CK-01 1 231334844 231334844 G C TRIM67 Missense_Mutation p.V398L 0.14 deleterious(0.04) benign(0.014) TCGA-C5-A7CK-01 1 234536926 234536926 C A TARBP1 Splice_Site p.X1357_splice 0.26 TCGA-C5-A7CK-01 1 24200985 24200985 G A CNR2 3'UTR 0.29 TCGA-C5-A7CK-01 1 247582049 247582049 G T NLRP3 5'UTR 0.19 TCGA-C5-A7CK-01 1 247587658 247587658 G A NLRP3 Missense_Mutation p.D305N 0.22 deleterious(0.03) probably_damaging(1) TCGA-C5-A7CK-01 1 248039700 248039700 T C TRIM58 Missense_Mutation p.I457T 0.19 tolerated(0.84) benign(0.006) TCGA-C5-A7CK-01 1 44088218 44088218 G C PTPRF 3'UTR 0.47 TCGA-C5-A7CK-01 1 4834486 4834486 G A AJAP1 Splice_Site p.X388_splice 0.33 TCGA-C5-A7CK-01 1 48865220 48865220 C T SPATA6 Missense_Mutation p.E195K 0.07 tolerated(0.33) probably_damaging(0.979) TCGA-C5-A7CK-01 1 91989963 91989963 C T CDC7 Missense_Mutation p.H566Y 0.38 deleterious(0) probably_damaging(1) TCGA-C5-A7CK-01 20 2451375 2451375 C G SNRPB 5'UTR 0.07 TCGA-C5-A7CK-01 20 3102644 3102644 G A UBOX5 Missense_Mutation p.S214L 0.29 deleterious(0.01) benign(0.046) TCGA-C5-A7CK-01 20 37536814 37536814 C A PPP1R16B Missense_Mutation p.T391K 0.37 tolerated(0.1) benign(0.05) TCGA-C5-A7CK-01 20 418073 418073 G T TBC1D20 3'UTR 0.26 TCGA-C5-A7CK-01 21 40768789 40768789 C T WRB Intron 0.25 TCGA-C5-A7CK-01 21 42554159 42554159 C T BACE2 Intron 0.36 TCGA-C5-A7CK-01 22 24621550 24621550 G A GGT5 Nonsense_Mutation p.R434* 0.28 TCGA-C5-A7CK-01 22 28410369 28410369 C T TTC28 Missense_Mutation p.S1362N 0.24 deleterious(0.01) possibly_damaging(0.907) TCGA-C5-A7CK-01 22 36688041 36688043 CTT - MYH9 In_Frame_Del p.K1445del 0.26 TCGA-C5-A7CK-01 22 39176934 39176934 G A DNAL4 Silent p.N50N 0.30 TCGA-C5-A7CK-01 22 50599405 50599405 G C MOV10L1 Missense_Mutation p.G1159R 0.25 tolerated(0.56) benign(0.009) TCGA-C5-A7CK-01 2 100199393 100199393 G C AFF3 Missense_Mutation p.S912C 0.22 deleterious(0.04) benign(0.019) TCGA-C5-A7CK-01 2 108999913 108999913 G C SULT1C4 Missense_Mutation p.E188Q 0.23 tolerated(0.07) benign(0.024) TCGA-C5-A7CK-01 2 133489419 133489419 G A NCKAP5 Silent p.D1778D 0.23 TCGA-C5-A7CK-01 2 162281186 162281186 C T TBR1 3'UTR 0.34 TCGA-C5-A7CK-01 2 177188191 177188191 T G MTX2 Silent p.S69S 0.19 TCGA-C5-A7CK-01 2 18768822 18768822 C G NT5C1B Missense_Mutation p.E23Q 0.32 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-C5-A7CK-01 2 213864978 213864978 A T IKZF2 3'UTR 0.30 TCGA-C5-A7CK-01 2 230670551 230670551 G A TRIP12 Intron 0.53 TCGA-C5-A7CK-01 2 242815292 242815292 C T CXXC11 Missense_Mutation p.P529S 0.37 tolerated(0.56) benign(0.012) TCGA-C5-A7CK-01 2 27898427 27898427 G A SLC4A1AP Nonsense_Mutation p.W458* 0.31 TCGA-C5-A7CK-01 2 37234376 37234376 G A HEATR5B Missense_Mutation p.L1532F 0.33 deleterious(0) probably_damaging(0.997) TCGA-C5-A7CK-01 2 55179763 55179763 G C EML6 Missense_Mutation p.D1416H 0.08 deleterious(0) probably_damaging(1) TCGA-C5-A7CK-01 2 69569334 69569334 G A GFPT1 Missense_Mutation p.R385W 0.26 deleterious(0) probably_damaging(0.997) TCGA-C5-A7CK-01 2 69702182 69702182 G A AAK1 3'UTR 0.06 TCGA-C5-A7CK-01 2 84806665 84806665 G A DNAH6 Missense_Mutation p.M697I 0.23 tolerated(0.55) benign(0.002) TCGA-C5-A7CK-01 3 124739958 124739958 C T HEG1 Silent p.E310E 0.18 TCGA-C5-A7CK-01 3 132361561 132361561 G A ACAD11 Missense_Mutation p.S112F 0.07 deleterious(0) possibly_damaging(0.797) TCGA-C5-A7CK-01 3 133347439 133347439 C A TOPBP1 Missense_Mutation p.A887S 0.27 tolerated(0.08) benign(0.215) TCGA-C5-A7CK-01 3 14862555 14862555 G A FGD5 Silent p.L659L 0.14 TCGA-C5-A7CK-01 3 14862755 14862755 G C FGD5 Missense_Mutation p.R726T 0.66 deleterious(0.02) probably_damaging(0.962) TCGA-C5-A7CK-01 3 167747608 167747608 C G GOLIM4 Missense_Mutation p.E465Q 0.10 tolerated(0.52) benign(0.008) TCGA-C5-A7CK-01 3 172472283 172472283 A C ECT2 Intron 0.18 TCGA-C5-A7CK-01 3 196050851 196050851 C T TM4SF19 Missense_Mutation p.R156H 0.18 tolerated(0.68) benign(0.007) TCGA-C5-A7CK-01 3 30691762 30691762 G A TGFBR2 Nonsense_Mutation p.W113* 0.71 TCGA-C5-A7CK-01 3 49160566 49160566 A G LAMB2 Missense_Mutation p.L1408P 0.35 deleterious(0.02) possibly_damaging(0.811) TCGA-C5-A7CK-01 3 50404531 50404531 C T CACNA2D2 Missense_Mutation p.R811K 0.36 tolerated(0.59) benign(0.029) TCGA-C5-A7CK-01 5 100191850 100191850 G A ST8SIA4 Nonsense_Mutation p.R252* 0.29 TCGA-C5-A7CK-01 5 112346477 112346477 C T DCP2 Missense_Mutation p.R358W 0.42 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-C5-A7CK-01 5 1280343 1280343 G T TERT Missense_Mutation p.P627H 0.20 deleterious(0.03) possibly_damaging(0.894) TCGA-C5-A7CK-01 5 140720206 140720206 C T PCDHGA2 Silent p.N556N 0.21 TCGA-C5-A7CK-01 5 154393403 154393403 G A KIF4B 5'UTR 0.32 TCGA-C5-A7CK-01 5 159776166 159776166 G A C1QTNF2 3'UTR 0.36 TCGA-C5-A7CK-01 5 176859762 176859762 G T GRK6 Missense_Mutation p.R132L 0.36 tolerated(0.09) benign(0.171) TCGA-C5-A7CK-01 5 179146670 179146670 G A CANX Missense_Mutation p.D305N 0.22 tolerated(0.07) probably_damaging(1) TCGA-C5-A7CK-01 5 24593414 24593414 G A CDH10 Silent p.F62F 0.06 TCGA-C5-A7CK-01 6 109689258 109689258 A G CD164 3'UTR 0.27 TCGA-C5-A7CK-01 6 139501699 139501699 C T HECA 3'UTR 0.09 TCGA-C5-A7CK-01 6 18226440 18226440 C T DEK Missense_Mutation p.E361K 0.07 tolerated(0.29) possibly_damaging(0.635) TCGA-C5-A7CK-01 6 28358451 28358451 C A ZSCAN12 Missense_Mutation p.S539I 0.19 tolerated(0.18) probably_damaging(0.967) TCGA-C5-A7CK-01 6 29641066 29641066 G A ZFP57 Silent p.L274L 0.54 TCGA-C5-A7CK-01 6 30610776 30610776 G A ATAT1 Missense_Mutation p.R307H 0.07 tolerated(0.12) benign(0.053) TCGA-C5-A7CK-01 6 4130608 4130608 C T ECI2 Missense_Mutation p.E167K 0.65 tolerated(0.45) benign(0.008) TCGA-C5-A7CK-01 6 44233388 44233388 C T NFKBIE Missense_Mutation p.R38Q 0.22 unknown(0) TCGA-C5-A7CK-01 6 51586691 51586691 C G PKHD1 Intron 0.23 TCGA-C5-A7CK-01 6 75865553 75865553 G A COL12A1 Missense_Mutation p.P1090S 0.66 probably_damaging(0.993) TCGA-C5-A7CK-01 6 8064563 8064609 GGGGCGGCCTCACAACCCACAGGGGTCTCTGTCCCTCCGCCACTCAT - BLOC1S5 Frame_Shift_Del p.M1_?16 0.51 TCGA-C5-A7CK-01 6 85472376 85472376 C T TBX18 Missense_Mutation p.R128Q 0.10 tolerated(0.64) benign(0) TCGA-C5-A7CK-01 7 129842441 129842441 A C TMEM209 Missense_Mutation p.Y88D 0.05 tolerated(0.13) probably_damaging(0.999) TCGA-C5-A7CK-01 7 30490876 30490876 G A NOD1 Silent p.G719G 0.38 TCGA-C5-A7CK-01 7 56066732 56066732 C G GBAS Missense_Mutation p.I276M 0.36 deleterious(0) probably_damaging(0.989) TCGA-C5-A7CK-01 7 75609665 75609665 G C POR Silent p.L125L 0.29 TCGA-C5-A7CK-01 8 120118095 120118095 A T COLEC10 Nonsense_Mutation p.K167* 0.17 TCGA-C5-A7CK-01 8 143784843 143784843 G A LY6K 3'UTR 0.27 TCGA-C5-A7CK-01 8 144896051 144896051 G A SCRIB Missense_Mutation p.P98L 0.25 possibly_damaging(0.894) TCGA-C5-A7CK-01 8 19824480 19824480 C T LPL 3'UTR 0.14 TCGA-C5-A7CK-01 8 30717450 30717450 C A TEX15 RNA 0.30 TCGA-C5-A7CK-01 9 104172731 104172731 T G ZNF189 3'UTR 0.24 TCGA-C5-A7CK-01 9 117063996 117063996 C T COL27A1 Missense_Mutation p.P1615L 0.15 unknown(0) TCGA-C5-A7CK-01 9 131497626 131497626 G A ZER1 Silent p.L709L 0.16 TCGA-C5-A7CK-01 9 140260773 140260773 C G EXD3 Intron 0.10 TCGA-C5-A7CK-01 9 17143284 17143284 A C CNTLN Splice_Site p.X121_splice 0.14 TCGA-C5-A7CK-01 9 32787162 32787162 C T TMEM215 3'UTR 0.21 TCGA-C5-A7CK-01 9 5921188 5921188 G A KIAA2026 Missense_Mutation p.T1603I 0.32 tolerated(0.95) benign(0.04) TCGA-C5-A7CK-01 9 85905557 85905557 A - FRMD3 Frame_Shift_Del p.S386Pfs*27 0.20 TCGA-C5-A7CK-01 9 86585658 86585658 G A HNRNPK Silent p.P395P 0.31 TCGA-C5-A7CK-01 9 99266041 99266041 C A CDC14B Missense_Mutation p.L497F 0.15 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-C5-A7CK-01 X 148074268 148074268 A T AFF2 3'UTR 0.50 TCGA-C5-A7CK-01 X 595405 595405 C T SHOX Silent p.D110D 0.31 TCGA-C5-A7CK-01 X 69772050 69772050 A G TEX11 Missense_Mutation p.S831P 0.10 tolerated(0.2) benign(0.006) TCGA-C5-A7CK-01 X 73955509 73955509 G T KIAA2022 3'UTR 0.45 TCGA-C5-A7CL-01 10 102295784 102295784 C G HIF1AN Silent p.L23L 0.62 TCGA-C5-A7CL-01 10 124189979 124189979 A G PLEKHA1 3'UTR 0.24 TCGA-C5-A7CL-01 10 135096699 135096699 G A TUBGCP2 Silent p.G752G 0.10 TCGA-C5-A7CL-01 10 13743412 13743412 C T FRMD4A Silent p.P301P 0.31 TCGA-C5-A7CL-01 10 27702727 27702727 C T PTCHD3 Silent p.A151A 0.17 TCGA-C5-A7CL-01 10 89717661 89717661 C G PTEN Nonsense_Mutation p.S229* 0.41 TCGA-C5-A7CL-01 11 103909056 103909056 G T DDI1 3'UTR 0.53 TCGA-C5-A7CL-01 11 561798 561798 G C RASSF7 Silent p.L10L 0.31 TCGA-C5-A7CL-01 11 63742188 63742188 G C AP000721.4 Missense_Mutation p.L12F 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-C5-A7CL-01 11 64507254 64507254 G A RASGRP2 Missense_Mutation p.H184Y 0.29 deleterious(0) probably_damaging(0.968) TCGA-C5-A7CL-01 11 65481086 65481086 C T KAT5 Missense_Mutation p.S188L 0.37 tolerated(0.12) benign(0.108) TCGA-C5-A7CL-01 11 72004259 72004259 G A CLPB 3'UTR 0.36 TCGA-C5-A7CL-01 11 78381478 78381478 G C TENM4 Nonsense_Mutation p.S1971* 0.21 TCGA-C5-A7CL-01 12 104458473 104458473 C T HCFC2 Silent p.I45I 0.38 TCGA-C5-A7CL-01 12 104682685 104682685 C G TXNRD1 Intron 0.38 TCGA-C5-A7CL-01 12 116457130 116457130 C T MED13L Missense_Mutation p.G303D 0.35 deleterious(0.03) unknown(0) TCGA-C5-A7CL-01 12 13717247 13717247 C G GRIN2B Silent p.L975L 0.44 TCGA-C5-A7CL-01 12 31116776 31116776 G A TSPAN11 Missense_Mutation p.V34I 0.25 deleterious(0.03) benign(0.325) TCGA-C5-A7CL-01 12 41853815 41853815 G A PDZRN4 Intron 0.37 TCGA-C5-A7CL-01 12 52501261 52501261 G T AC078864.1 3'Flank 0.30 TCGA-C5-A7CL-01 12 55820622 55820622 G C OR6C76 Missense_Mutation p.M195I 0.31 tolerated_low_confidence(0.49) benign(0.008) TCGA-C5-A7CL-01 12 55820808 55820808 G A OR6C76 Silent p.V257V 0.18 TCGA-C5-A7CL-01 12 67707341 67707341 G A CAND1 3'UTR 0.26 TCGA-C5-A7CL-01 12 70004462 70004462 C T LRRC10 Missense_Mutation p.E53K 0.19 tolerated(0.25) possibly_damaging(0.639) TCGA-C5-A7CL-01 12 93968515 93968516 - T SOCS2 Frame_Shift_Ins p.M53Ifs*4 0.15 TCGA-C5-A7CL-01 13 107148128 107148128 C T EFNB2 Missense_Mutation p.R156K 0.22 tolerated(0.86) benign(0.003) TCGA-C5-A7CL-01 13 72204688 72204688 C T DACH1 Missense_Mutation p.G378R 0.38 benign(0.022) TCGA-C5-A7CL-01 14 107083491 107083491 G C IGHV4-59 Missense_Mutation p.S38C 0.10 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-C5-A7CL-01 14 21026733 21026733 G C RNASE9 5'UTR 0.24 TCGA-C5-A7CL-01 14 53324533 53324533 T G FERMT2 3'UTR 0.37 TCGA-C5-A7CL-01 15 40477477 40477477 C T BUB1B Missense_Mutation p.S288F 0.38 deleterious(0.02) benign(0.005) TCGA-C5-A7CL-01 15 52446256 52446256 G A GNB5 Missense_Mutation p.R86W 0.27 deleterious(0.01) possibly_damaging(0.557) TCGA-C5-A7CL-01 15 55677852 55677852 C T CCPG1 Missense_Mutation p.E41K 0.27 deleterious(0.04) possibly_damaging(0.516) TCGA-C5-A7CL-01 15 72582590 72582590 C T CELF6 Missense_Mutation p.R134Q 0.22 deleterious(0.01) probably_damaging(0.977) TCGA-C5-A7CL-01 15 79056093 79056093 C T ADAMTS7 Missense_Mutation p.R1563Q 0.29 tolerated(0.44) benign(0.161) TCGA-C5-A7CL-01 15 80263504 80263504 G A BCL2A1 5'UTR 0.33 TCGA-C5-A7CL-01 15 88680772 88680772 A G NTRK3 Missense_Mutation p.F162S 0.30 deleterious(0) probably_damaging(0.979) TCGA-C5-A7CL-01 16 11002911 11002911 C T CIITA Silent p.L895L 0.29 TCGA-C5-A7CL-01 16 31488298 31488298 C T TGFB1I1 Silent p.S362S 0.57 TCGA-C5-A7CL-01 16 3490834 3490834 C G ZNF597 Missense_Mutation p.E45Q 0.28 deleterious(0.01) probably_damaging(0.953) TCGA-C5-A7CL-01 16 628881 628881 C G PIGQ Missense_Mutation p.S389W 0.20 deleterious(0.02) probably_damaging(0.94) TCGA-C5-A7CL-01 16 67214387 67214387 G A KIAA0895L Nonsense_Mutation p.Q43* 0.06 TCGA-C5-A7CL-01 16 67970624 67970635 CCTCGGGGCTCC G PSMB10 Frame_Shift_Del p.E7Gfs*51 0.23 TCGA-C5-A7CL-01 17 30696449 30696449 A T ZNF207 Missense_Mutation p.M434L 0.38 deleterious_low_confidence(0.04) unknown(0) TCGA-C5-A7CL-01 17 35306397 35306397 G A AATF 5'UTR 0.19 TCGA-C5-A7CL-01 17 38252730 38252730 G C NR1D1 Missense_Mutation p.F190L 0.32 deleterious(0.03) benign(0.079) TCGA-C5-A7CL-01 17 48653588 48653588 G A CACNA1G Missense_Mutation p.E609K 0.07 tolerated(0.4) benign(0.194) TCGA-C5-A7CL-01 17 49302481 49302481 G A MBTD1 Silent p.S14S 0.10 TCGA-C5-A7CL-01 17 58303502 58303502 C T USP32 Missense_Mutation p.E444K 0.17 tolerated(0.41) benign(0.086) TCGA-C5-A7CL-01 17 72256450 72256450 G A TTYH2 3'UTR 0.36 TCGA-C5-A7CL-01 17 8243317 8243317 A G ODF4 5'UTR 0.33 TCGA-C5-A7CL-01 18 46783450 46783450 A C DYM Missense_Mutation p.L464V 0.24 deleterious(0) probably_damaging(1) TCGA-C5-A7CL-01 18 55226399 55226399 G A FECH Missense_Mutation p.S267F 0.34 deleterious(0) possibly_damaging(0.908) TCGA-C5-A7CL-01 19 11597904 11597904 G A ZNF653 Missense_Mutation p.T414M 0.41 tolerated(0.11) benign(0.009) TCGA-C5-A7CL-01 19 1218457 1218457 T A STK11 Missense_Mutation p.I111N 0.48 deleterious(0) probably_damaging(1) TCGA-C5-A7CL-01 19 1218458 1218458 C T STK11 Silent p.I111I 0.46 TCGA-C5-A7CL-01 19 1221966 1221966 C T STK11 Missense_Mutation p.P294L 0.45 deleterious(0.02) probably_damaging(0.995) TCGA-C5-A7CL-01 19 1270036 1270036 G C CIRBP Intron 0.22 TCGA-C5-A7CL-01 19 16664607 16664607 G C SLC35E1 Silent p.L372L 0.32 TCGA-C5-A7CL-01 19 17405201 17405201 C T ABHD8 Missense_Mutation p.E349K 0.29 deleterious(0) possibly_damaging(0.766) TCGA-C5-A7CL-01 19 18092652 18092652 G A KCNN1 Silent p.A211A 0.24 TCGA-C5-A7CL-01 19 19168669 19168669 G A ARMC6 3'UTR 0.21 TCGA-C5-A7CL-01 19 19449665 19449665 G A MAU2 Silent p.T156T 0.38 TCGA-C5-A7CL-01 19 38995490 38995490 G A RYR1 Missense_Mutation p.E2724K 0.38 benign(0.003) TCGA-C5-A7CL-01 19 40421395 40421395 C T FCGBP Silent p.P842P 0.43 TCGA-C5-A7CL-01 19 42364212 42364212 G A RPS19 5'UTR 0.31 TCGA-C5-A7CL-01 19 49934353 49934353 G C SLC17A7 Missense_Mutation p.I436M 0.35 deleterious(0) possibly_damaging(0.598) TCGA-C5-A7CL-01 19 54406378 54406378 G A PRKCG Missense_Mutation p.V543I 0.23 deleterious(0.04) benign(0.44) TCGA-C5-A7CL-01 19 5917153 5917153 G A RANBP3 3'UTR 0.22 TCGA-C5-A7CL-01 1 109635591 109635591 C G TMEM167B Silent p.L30L 0.31 TCGA-C5-A7CL-01 1 117559730 117559730 C T CD101 Missense_Mutation p.S416F 0.30 tolerated(0.05) benign(0.03) TCGA-C5-A7CL-01 1 1289241 1289241 G C MXRA8 Missense_Mutation p.I430M 0.28 deleterious(0) benign(0.417) TCGA-C5-A7CL-01 1 152083004 152083004 C G TCHH Missense_Mutation p.E897Q 0.12 unknown(0) TCGA-C5-A7CL-01 1 154947318 154947318 G A CKS1B Intron 0.25 TCGA-C5-A7CL-01 1 155869792 155869792 C G RIT1 3'Flank 0.35 TCGA-C5-A7CL-01 1 156594401 156594401 G C HAPLN2 Missense_Mutation p.E189Q 0.19 tolerated(0.05) probably_damaging(0.996) TCGA-C5-A7CL-01 1 157490329 157490329 C T FCRL5 Missense_Mutation p.A842T 0.17 tolerated(0.06) benign(0.026) TCGA-C5-A7CL-01 1 159162383 159162383 G A CADM3 Missense_Mutation p.R116Q 0.13 deleterious(0) probably_damaging(1) TCGA-C5-A7CL-01 1 170688882 170688882 C T PRRX1 Missense_Mutation p.S86L 0.24 tolerated(0.08) benign(0.016) TCGA-C5-A7CL-01 1 186296624 186296624 C G TPR Missense_Mutation p.E1953Q 0.47 benign(0.403) TCGA-C5-A7CL-01 1 202935026 202935026 G C CYB5R1 Missense_Mutation p.L112V 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-C5-A7CL-01 1 207015960 207015960 C T IL19 Missense_Mutation p.S214L 0.17 deleterious_low_confidence(0.01) benign(0.017) TCGA-C5-A7CL-01 1 207225661 207225661 G C YOD1 5'Flank 0.23 TCGA-C5-A7CL-01 1 222919893 222919893 G C FAM177B Missense_Mutation p.E2D 0.09 tolerated(0.06) possibly_damaging(0.616) TCGA-C5-A7CL-01 1 223963574 223963574 C T CAPN2 3'UTR 0.08 TCGA-C5-A7CL-01 1 28503118 28503118 C T PTAFR 5'UTR 0.40 TCGA-C5-A7CL-01 1 44070878 44070878 G C PTPRF Missense_Mutation p.Q1051H 0.16 tolerated(0.16) benign(0.027) TCGA-C5-A7CL-01 1 53729838 53729838 C G LRP8 Intron 0.32 TCGA-C5-A7CL-01 1 55538465 55538465 C G USP24 Missense_Mutation p.Q2532H 0.24 deleterious(0.01) possibly_damaging(0.553) TCGA-C5-A7CL-01 1 66098839 66098839 C T LEPR Intron 0.24 TCGA-C5-A7CL-01 1 67263926 67263926 C G INSL5 Missense_Mutation p.E60Q 0.24 deleterious(0.04) benign(0.357) TCGA-C5-A7CL-01 1 79358831 79358831 C T ELTD1 Missense_Mutation p.R598H 0.22 tolerated(0.32) probably_damaging(0.989) TCGA-C5-A7CL-01 20 21687070 21687070 C G PAX1 Intron 0.09 TCGA-C5-A7CL-01 20 36031840 36031840 C T SRC 3'UTR 0.16 TCGA-C5-A7CL-01 20 36572449 36572449 G A VSTM2L Missense_Mutation p.E137K 0.25 deleterious(0) probably_damaging(1) TCGA-C5-A7CL-01 20 44665926 44665926 C G SLC12A5 Missense_Mutation p.L195V 0.28 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CL-01 20 9519534 9519534 C T PAK7 3'UTR 0.22 TCGA-C5-A7CL-01 21 45945555 45945555 C T TSPEAR Silent p.A439A 0.33 TCGA-C5-A7CL-01 22 17445751 17445751 G T GAB4 Missense_Mutation p.H461N 0.29 tolerated(0.33) benign(0.005) TCGA-C5-A7CL-01 22 20343361 20343361 C T XXbac-B33L19.6 5'Flank 0.10 TCGA-C5-A7CL-01 22 31328385 31328385 C G MORC2 Silent p.L872L 0.28 TCGA-C5-A7CL-01 22 39883520 39883520 C T MGAT3 Silent p.V56V 0.35 TCGA-C5-A7CL-01 22 39883979 39883979 C G MGAT3 Missense_Mutation p.I209M 0.46 deleterious(0) probably_damaging(0.997) TCGA-C5-A7CL-01 22 50902823 50902823 G A SBF1 Missense_Mutation p.R562W 0.44 deleterious(0) probably_damaging(1) TCGA-C5-A7CL-01 22 51014666 51014666 C T CPT1B Silent p.Q220Q 0.18 TCGA-C5-A7CL-01 2 103324666 103324666 C G SLC9A2 Missense_Mutation p.F719L 0.26 tolerated(0.72) benign(0.008) TCGA-C5-A7CL-01 2 111408297 111408297 G A BUB1 Missense_Mutation p.R677C 0.41 tolerated(0.16) benign(0.001) TCGA-C5-A7CL-01 2 136562391 136562391 C G LCT Silent p.L1470L 0.10 TCGA-C5-A7CL-01 2 141806683 141806683 T C LRP1B Missense_Mutation p.N554S 0.21 benign(0.292) TCGA-C5-A7CL-01 2 170428398 170428398 C G FASTKD1 Missense_Mutation p.D48H 0.25 tolerated(0.38) possibly_damaging(0.824) TCGA-C5-A7CL-01 2 1794960 1794960 C G MYT1L 3'Flank 0.25 TCGA-C5-A7CL-01 2 189864098 189864098 G A COL3A1 Missense_Mutation p.E704K 0.29 unknown(0) TCGA-C5-A7CL-01 2 215875193 215875193 T C ABCA12 Silent p.T778T 0.16 TCGA-C5-A7CL-01 2 219082250 219082250 C G ARPC2 Missense_Mutation p.F19L 0.18 tolerated(0.19) benign(0.01) TCGA-C5-A7CL-01 2 234669139 234669139 G A UGT1A8 Intron 0.39 TCGA-C5-A7CL-01 2 238243461 238243461 C T COL6A3 Missense_Mutation p.E3013K 0.13 unknown(0) TCGA-C5-A7CL-01 2 26951666 26951666 G A KCNK3 3'UTR 0.32 TCGA-C5-A7CL-01 2 32640932 32640932 C T BIRC6 Missense_Mutation p.S858L 0.31 probably_damaging(0.978) TCGA-C5-A7CL-01 2 68388847 68388847 G C PNO1 Silent p.L130L 0.29 TCGA-C5-A7CL-01 3 10417157 10417157 C T ATP2B2 Missense_Mutation p.G458E 0.50 deleterious(0) probably_damaging(1) TCGA-C5-A7CL-01 3 107474452 107474452 C G BBX Nonsense_Mutation p.S278* 0.10 TCGA-C5-A7CL-01 3 113374816 113374816 C G KIAA2018 Missense_Mutation p.D1905H 0.30 probably_damaging(0.999) TCGA-C5-A7CL-01 3 126151933 126151933 G C CCDC37 Silent p.L436L 0.22 TCGA-C5-A7CL-01 3 130743916 130743916 C G ASTE1 Missense_Mutation p.D79H 0.27 deleterious(0) probably_damaging(1) TCGA-C5-A7CL-01 3 133663963 133663963 C G SLCO2A1 Missense_Mutation p.M479I 0.26 tolerated(0.72) benign(0) TCGA-C5-A7CL-01 3 140281742 140281742 C T CLSTN2 Missense_Mutation p.R768W 0.20 deleterious(0) possibly_damaging(0.453) TCGA-C5-A7CL-01 3 142756119 142756119 C T U2SURP Silent p.I721I 0.36 TCGA-C5-A7CL-01 3 183977574 183977574 G A CAMK2N2 3'UTR 0.44 TCGA-C5-A7CL-01 3 19190254 19190254 C T KCNH8 Silent p.L15L 0.42 TCGA-C5-A7CL-01 3 25542806 25542806 C T RARB Missense_Mutation p.S147F 0.40 deleterious(0) possibly_damaging(0.656) TCGA-C5-A7CL-01 3 52847505 52847505 C T ITIH4 Missense_Mutation p.E909K 0.30 tolerated(0.64) benign(0.03) TCGA-C5-A7CL-01 4 88416150 88416150 C T SPARCL1 Missense_Mutation p.D62N 0.55 tolerated(0.49) benign(0.012) TCGA-C5-A7CL-01 4 89426997 89426997 G A HERC5 Missense_Mutation p.E1015K 0.37 deleterious(0.02) benign(0.109) TCGA-C5-A7CL-01 5 1037712 1037712 A C NKD2 Intron 0.21 TCGA-C5-A7CL-01 5 127704974 127704974 G A FBN2 Missense_Mutation p.R717C 0.11 deleterious(0) possibly_damaging(0.458) TCGA-C5-A7CL-01 5 134010893 134010893 C G SEC24A Silent p.L379L 0.33 TCGA-C5-A7CL-01 5 142661286 142661286 C A NR3C1 3'UTR 0.20 TCGA-C5-A7CL-01 5 169533237 169533237 G A FOXI1 Silent p.Q92Q 0.39 TCGA-C5-A7CL-01 5 33963886 33963886 G T SLC45A2 Nonsense_Mutation p.Y266* 0.20 TCGA-C5-A7CL-01 5 43509274 43509274 C G C5orf34 Missense_Mutation p.R56S 0.19 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CL-01 5 75913661 75913661 C T F2RL2 Missense_Mutation p.A291T 0.72 tolerated(0.45) benign(0.015) TCGA-C5-A7CL-01 5 90074700 90074700 C T GPR98 Missense_Mutation p.R4290C 0.49 probably_damaging(0.965) TCGA-C5-A7CL-01 5 94046549 94046549 G A MCTP1 Missense_Mutation p.P935L 0.48 deleterious(0) probably_damaging(1) TCGA-C5-A7CL-01 5 9629839 9629839 G A TAS2R1 Silent p.F102F 0.50 TCGA-C5-A7CL-01 6 134311265 134311265 G T SLC2A12 3'UTR 0.41 TCGA-C5-A7CL-01 6 169640669 169640669 G A THBS2 Missense_Mutation p.L304F 0.08 tolerated_low_confidence(0.08) benign(0.02) TCGA-C5-A7CL-01 6 169648967 169648967 C G THBS2 Missense_Mutation p.V52L 0.28 tolerated(0.25) benign(0.001) TCGA-C5-A7CL-01 6 29574685 29574685 G A GABBR1 Missense_Mutation p.R736W 0.25 deleterious(0) probably_damaging(0.971) TCGA-C5-A7CL-01 6 31785553 31785553 C T HSPA1A 3'UTR 0.26 TCGA-C5-A7CL-01 6 32805780 32805780 G A TAP2 Silent p.V77V 0.34 TCGA-C5-A7CL-01 6 33288313 33288313 C G DAXX Silent p.R365R 0.30 TCGA-C5-A7CL-01 6 74121973 74121973 G C DDX43 Missense_Mutation p.L442F 0.25 deleterious(0) probably_damaging(1) TCGA-C5-A7CL-01 7 155493745 155493745 C T RBM33 Intron 0.48 TCGA-C5-A7CL-01 7 38423530 38423530 C G AMPH 3'UTR 0.17 TCGA-C5-A7CL-01 7 51258767 51258768 CA - COBL Frame_Shift_Del p.V155Afs*19 0.27 TCGA-C5-A7CL-01 7 6189273 6189273 G A USP42 Silent p.S482S 0.29 TCGA-C5-A7CL-01 7 75192305 75192305 G A HIP1 Silent p.A318A 0.16 TCGA-C5-A7CL-01 7 857025 857025 C T SUN1 5'UTR 0.23 TCGA-C5-A7CL-01 8 144332125 144332125 G C ZFP41 Missense_Mutation p.E38Q 0.26 tolerated(0.62) benign(0) TCGA-C5-A7CL-01 8 86126509 86126509 C G E2F5 3'UTR 0.24 TCGA-C5-A7CL-01 8 87951821 87951821 C A CNBD1 Intron 0.25 TCGA-C5-A7CL-01 9 116930553 116930553 G A COL27A1 Missense_Mutation p.D240N 0.25 unknown(0) TCGA-C5-A7CL-01 9 123943423 123943423 G A RAB14 3'UTR 0.22 TCGA-C5-A7CL-01 9 128729186 128729186 G T PBX3 3'UTR 0.24 TCGA-C5-A7CL-01 9 138660689 138660689 C T KCNT1 Silent p.I472I 0.43 TCGA-C5-A7CL-01 9 139960103 139960105 CTC - SAPCD2 In_Frame_Del p.E234del 0.27 TCGA-C5-A7CL-01 9 21409239 21409239 C T IFNA8 Silent p.L22L 0.20 TCGA-C5-A7CL-01 9 84562977 84562977 C G RP11-383M4.6 Intron 0.23 TCGA-C5-A7CL-01 9 86276830 86276830 G C UBQLN1 Missense_Mutation p.Q548E 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-C5-A7CL-01 9 94123919 94123919 C T AUH Missense_Mutation p.E85K 0.25 tolerated(0.38) benign(0.13) TCGA-C5-A7CL-01 X 117695418 117695418 G A DOCK11 Missense_Mutation p.E211K 0.35 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CL-01 X 118971800 118971800 C G UPF3B Missense_Mutation p.E408Q 0.33 tolerated(0.07) benign(0.38) TCGA-C5-A7CL-01 X 152807877 152807877 C G ATP2B3 Nonsense_Mutation p.S254* 0.26 TCGA-C5-A7CL-01 X 153176375 153176375 C G ARHGAP4 Splice_Site p.X601_splice 0.28 TCGA-C5-A7CL-01 X 41556179 41556179 C G GPR34 3'UTR 0.28 TCGA-C5-A7CL-01 X 53643957 53643957 C T HUWE1 Missense_Mutation p.R644Q 0.32 probably_damaging(0.989) TCGA-C5-A7CL-01 X 55515232 55515232 C T USP51 Silent p.A47A 0.23 TCGA-C5-A7CL-01 X 62898257 62898257 A T ARHGEF9 Missense_Mutation p.L253M 0.39 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CL-01 X 84502475 84502475 T C ZNF711 Intron 0.21 TCGA-C5-A7CM-01 10 81275651 81275651 C T EIF5AL1 3'UTR 0.56 TCGA-C5-A7CM-01 12 49176440 49176440 C T ADCY6 Missense_Mutation p.A260T 0.09 deleterious(0) probably_damaging(0.962) TCGA-C5-A7CM-01 12 4921290 4921290 C T KCNA6 3'UTR 0.41 TCGA-C5-A7CM-01 15 67485876 67485876 C T SMAD3 3'UTR 0.08 TCGA-C5-A7CM-01 16 30964697 30964697 C T ORAI3 Silent p.H140H 0.38 TCGA-C5-A7CM-01 17 18682026 18682026 C A FBXW10 Missense_Mutation p.F858L 0.29 tolerated(0.29) benign(0.007) TCGA-C5-A7CM-01 19 48024549 48024549 A G ZNF541 Missense_Mutation p.W1344R 0.53 tolerated(0.07) probably_damaging(0.977) TCGA-C5-A7CM-01 1 110038388 110038388 G T CYB561D1 Missense_Mutation p.C88F 0.52 tolerated(0.54) benign(0.041) TCGA-C5-A7CM-01 2 120980587 120980587 C T TMEM185B 5'UTR 0.28 TCGA-C5-A7CM-01 2 169787297 169787297 T A ABCB11 Missense_Mutation p.N1097Y 0.52 deleterious(0) possibly_damaging(0.738) TCGA-C5-A7CM-01 2 232141480 232141480 G A ARMC9 Missense_Mutation p.R489H 0.49 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CM-01 2 55863111 55863112 TA - PNPT1 3'UTR 0.50 TCGA-C5-A7CM-01 3 108391500 108391500 C T DZIP3 Silent p.A862A 0.42 TCGA-C5-A7CM-01 3 146318092 146318092 G C PLSCR5 Missense_Mutation p.L58V 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A7CM-01 3 32994926 32994926 G A CCR4 Silent p.T4T 0.38 TCGA-C5-A7CM-01 5 1393607 1393607 C T SLC6A3 3'UTR 0.23 TCGA-C5-A7CM-01 5 140011843 140011843 G A CD14 Silent p.A242A 0.49 TCGA-C5-A7CM-01 5 35921161 35921161 G A CAPSL Missense_Mutation p.T21M 0.17 tolerated(0.13) benign(0.002) TCGA-C5-A7CM-01 5 61688793 61688793 T G DIMT1 Missense_Mutation p.T230P 0.45 deleterious(0) possibly_damaging(0.807) TCGA-C5-A7CM-01 6 154726694 154726694 C G CNKSR3 3'UTR 0.88 TCGA-C5-A7CM-01 6 30514892 30514892 C T GNL1 Missense_Mutation p.E480K 0.90 deleterious(0.01) probably_damaging(0.96) TCGA-C5-A7CM-01 6 96659598 96659599 - A FUT9 3'UTR 0.41 TCGA-C5-A7CM-01 7 11450920 11450920 C T THSD7A Missense_Mutation p.A1238T 0.06 deleterious(0) possibly_damaging(0.475) TCGA-C5-A7CM-01 9 133729451 133729451 A T ABL1 Missense_Mutation p.E46V 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-C5-A7CM-01 X 114399998 114399998 C T LRCH2 Missense_Mutation p.R442Q 0.30 tolerated(0.56) benign(0) TCGA-C5-A7CM-01 X 49597149 49597149 G T PAGE4 Missense_Mutation p.C63F 0.31 tolerated(0.19) benign(0.316) TCGA-C5-A7CM-01 X 79277789 79277789 G A TBX22 Silent p.A7A 0.21 TCGA-C5-A7CO-01 10 22048362 22048362 G A DNAJC1 Missense_Mutation p.R445W 0.19 deleterious(0) probably_damaging(0.998) TCGA-C5-A7CO-01 10 79396114 79396114 C T KCNMA1 Intron 0.11 TCGA-C5-A7CO-01 11 113076287 113076287 G A NCAM1 Missense_Mutation p.R189Q 0.30 tolerated(0.12) benign(0.004) TCGA-C5-A7CO-01 11 120852839 120852839 G T GRIK4 Missense_Mutation p.G807V 0.26 deleterious(0) probably_damaging(1) TCGA-C5-A7CO-01 11 3109065 3109066 GT - OSBPL5 3'UTR 0.19 TCGA-C5-A7CO-01 11 3681284 3681284 C T ART1 Nonsense_Mutation p.R179* 0.24 TCGA-C5-A7CO-01 11 55927137 55927137 C T OR8K5 Missense_Mutation p.M219I 0.22 tolerated_low_confidence(0.31) benign(0.001) TCGA-C5-A7CO-01 11 59282804 59282804 G A OR4D9 Missense_Mutation p.R140Q 0.34 tolerated(0.09) benign(0.041) TCGA-C5-A7CO-01 11 59560895 59560895 G A STX3 Missense_Mutation p.E195K 0.23 deleterious(0) possibly_damaging(0.468) TCGA-C5-A7CO-01 11 62416084 62416084 G A INTS5 Nonsense_Mutation p.R490* 0.39 TCGA-C5-A7CO-01 11 64854869 64854869 G A ZFPL1 Missense_Mutation p.R237H 0.25 deleterious(0) probably_damaging(1) TCGA-C5-A7CO-01 11 89774688 89774688 C G TRIM49C Silent p.L443L 0.48 TCGA-C5-A7CO-01 12 102038471 102038471 C T MYBPC1 Nonsense_Mutation p.Q263* 0.10 TCGA-C5-A7CO-01 12 11420124 11420124 G A PRB3 3'UTR 0.54 TCGA-C5-A7CO-01 12 12048136 12048136 C T ETV6 3'UTR 0.23 TCGA-C5-A7CO-01 12 123471369 123471369 G T PITPNM2 Missense_Mutation p.Q1141K 0.30 deleterious(0) probably_damaging(0.991) TCGA-C5-A7CO-01 12 124421011 124421011 A - CCDC92 3'UTR 0.24 TCGA-C5-A7CO-01 12 49093609 49093609 T C CCNT1 Missense_Mutation p.I150V 0.55 tolerated(0.2) benign(0.002) TCGA-C5-A7CO-01 12 53342948 53342948 C G KRT18 5'UTR 0.31 TCGA-C5-A7CO-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.47 deleterious(0.05) possibly_damaging(0.789) TCGA-C5-A7CO-01 12 56512080 56512080 A G ZC3H10 5'UTR 0.53 TCGA-C5-A7CO-01 12 6422899 6422899 G C PLEKHG6 Missense_Mutation p.K81N 0.53 deleterious(0.04) benign(0.083) TCGA-C5-A7CO-01 12 6950484 6950484 G A GNB3 Silent p.A11A 0.24 TCGA-C5-A7CO-01 12 8542870 8542870 C T LINC00937 RNA 0.35 TCGA-C5-A7CO-01 13 101184552 101184552 C T GGACT Silent p.L98L 0.89 TCGA-C5-A7CO-01 13 49047512 49047512 G T RB1 Missense_Mutation p.G836C 0.53 deleterious(0) probably_damaging(1) TCGA-C5-A7CO-01 14 23586830 23586830 C T CEBPE Missense_Mutation p.E238K 0.23 deleterious(0) probably_damaging(0.989) TCGA-C5-A7CO-01 14 57671461 57671461 C T EXOC5 3'UTR 0.07 TCGA-C5-A7CO-01 14 59951448 59951448 C T JKAMP Intron 0.22 TCGA-C5-A7CO-01 14 73745990 73745990 C T NUMB Silent p.S413S 0.31 TCGA-C5-A7CO-01 15 40914824 40914824 G A CASC5 Missense_Mutation p.E814K 0.10 tolerated(0.11) benign(0.033) TCGA-C5-A7CO-01 15 43748156 43748156 C T TP53BP1 Missense_Mutation p.A884T 0.19 tolerated(0.33) benign(0.062) TCGA-C5-A7CO-01 15 65871854 65871854 G A VWA9 Silent p.A426A 0.29 TCGA-C5-A7CO-01 15 67547069 67547069 C T AAGAB 5'UTR 0.14 TCGA-C5-A7CO-01 15 83680351 83680351 C T C15orf40 Silent p.R3R 0.44 TCGA-C5-A7CO-01 15 99670051 99670051 C G SYNM Missense_Mutation p.L495V 0.31 tolerated(0.44) benign(0.013) TCGA-C5-A7CO-01 16 1642286 1642286 G A IFT140 Silent p.S175S 0.06 TCGA-C5-A7CO-01 16 21689852 21689852 C T OTOA Missense_Mutation p.T6M 0.53 tolerated_low_confidence(0.06) possibly_damaging(0.676) TCGA-C5-A7CO-01 16 46992983 46992983 C G DNAJA2 Missense_Mutation p.G327R 0.38 deleterious(0) probably_damaging(1) TCGA-C5-A7CO-01 16 48249195 48249195 G A ABCC11 Missense_Mutation p.R338C 0.36 deleterious(0) probably_damaging(1) TCGA-C5-A7CO-01 16 74330791 74330791 C T PSMD7 5'UTR 0.30 TCGA-C5-A7CO-01 16 816385 816385 C T MSLN Silent p.L375L 0.56 TCGA-C5-A7CO-01 17 33336226 33336226 G A RFFL 3'UTR 0.11 TCGA-C5-A7CO-01 17 39768637 39768637 A C KRT16 Missense_Mutation p.F102V 0.39 tolerated(0.26) unknown(0) TCGA-C5-A7CO-01 17 46053338 46053338 C T CDK5RAP3 Missense_Mutation p.P253S 0.59 deleterious(0.02) possibly_damaging(0.838) TCGA-C5-A7CO-01 17 46654215 46654215 A C HOXB4 Missense_Mutation p.W209G 0.43 deleterious(0) probably_damaging(1) TCGA-C5-A7CO-01 18 2697930 2697930 T C SMCHD1 Silent p.F411F 0.23 TCGA-C5-A7CO-01 18 5445243 5445243 T G EPB41L3 Missense_Mutation p.K128Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-C5-A7CO-01 18 67995865 67995865 C G SOCS6 3'UTR 0.10 TCGA-C5-A7CO-01 19 14260989 14260989 C T LPHN1 3'UTR 0.46 TCGA-C5-A7CO-01 19 20044223 20044223 C G ZNF93 Silent p.V153V 0.22 TCGA-C5-A7CO-01 19 21992363 21992363 G A ZNF43 Missense_Mutation p.S159L 0.27 tolerated(0.14) probably_damaging(0.979) TCGA-C5-A7CO-01 19 35531180 35531180 C T HPN 5'Flank 0.35 TCGA-C5-A7CO-01 19 42486094 42486094 C T ATP1A3 Silent p.Q399Q 0.07 TCGA-C5-A7CO-01 19 43093883 43093883 C G CEACAM8 Missense_Mutation p.E143D 0.48 tolerated(0.1) benign(0.024) TCGA-C5-A7CO-01 19 4327333 4327333 C T STAP2 Missense_Mutation p.V214M 0.27 deleterious(0.02) possibly_damaging(0.734) TCGA-C5-A7CO-01 19 52034738 52034738 C T SIGLEC6 Missense_Mutation p.G35R 0.12 deleterious(0) possibly_damaging(0.522) TCGA-C5-A7CO-01 19 54705020 54705020 C T RPS9 Intron 0.49 TCGA-C5-A7CO-01 19 57066448 57066448 C T ZFP28 Missense_Mutation p.A765V 0.52 deleterious(0) probably_damaging(1) TCGA-C5-A7CO-01 19 57773086 57773086 G A CTC-444N24.8 RNA 0.26 TCGA-C5-A7CO-01 19 58420793 58420793 G C ZNF417 Missense_Mutation p.Q285E 0.10 tolerated(0.5) benign(0.004) TCGA-C5-A7CO-01 19 621725 621725 G A POLRMT Missense_Mutation p.P658L 0.07 tolerated(0.05) benign(0.066) TCGA-C5-A7CO-01 19 726146 726146 C T PALM Missense_Mutation p.A5V 0.17 tolerated_low_confidence(0.39) benign(0.001) TCGA-C5-A7CO-01 1 110882167 110882167 G A RBM15 Missense_Mutation p.G47E 0.58 deleterious_low_confidence(0) benign(0.044) TCGA-C5-A7CO-01 1 117639973 117639973 G T TTF2 Missense_Mutation p.V1063L 0.23 deleterious(0) possibly_damaging(0.901) TCGA-C5-A7CO-01 1 144918884 144918884 T G PDE4DIP Missense_Mutation p.Q434H 0.12 deleterious(0) probably_damaging(0.999) TCGA-C5-A7CO-01 1 149857969 149857969 G A HIST2H2BE Silent p.I74I 0.27 TCGA-C5-A7CO-01 1 197123877 197123877 G C ZBTB41 3'UTR 0.70 TCGA-C5-A7CO-01 1 205897082 205897082 G A SLC26A9 Missense_Mutation p.A350V 0.59 deleterious(0) possibly_damaging(0.88) TCGA-C5-A7CO-01 1 22178409 22178409 G A HSPG2 Missense_Mutation p.S2294F 0.10 probably_damaging(0.994) TCGA-C5-A7CO-01 1 242016700 242016700 C T EXO1 Missense_Mutation p.R108C 0.27 deleterious(0) probably_damaging(0.919) TCGA-C5-A7CO-01 1 6537661 6537661 C T PLEKHG5 Missense_Mutation p.E70K 0.20 deleterious(0.01) possibly_damaging(0.504) TCGA-C5-A7CO-01 1 75038216 75038216 G A C1orf173 Nonsense_Mutation p.R1060* 0.21 TCGA-C5-A7CO-01 1 9034438 9034438 C T CA6 Nonsense_Mutation p.Q293* 0.23 TCGA-C5-A7CO-01 20 26084183 26084183 C T NCOR1P1 RNA 0.06 TCGA-C5-A7CO-01 20 37153553 37153553 C A RALGAPB Nonsense_Mutation p.Y584* 0.25 TCGA-C5-A7CO-01 20 37154152 37154152 C G RALGAPB Silent p.V631V 0.27 TCGA-C5-A7CO-01 20 37551373 37551373 A C PPP1R16B 3'UTR 0.11 TCGA-C5-A7CO-01 20 47730039 47730039 G A STAU1 3'Flank 0.06 TCGA-C5-A7CO-01 20 49576981 49576981 C T MOCS3 3'UTR 0.45 TCGA-C5-A7CO-01 21 38884923 38884923 G A DYRK1A 3'Flank 0.12 TCGA-C5-A7CO-01 22 30000004 30000004 C T NF2 Missense_Mutation p.A6V 0.61 deleterious_low_confidence(0.01) benign(0.064) TCGA-C5-A7CO-01 22 30805418 30805418 C T SEC14L2 Missense_Mutation p.L175F 0.57 tolerated(0.57) probably_damaging(1) TCGA-C5-A7CO-01 22 37891547 37891547 G A CARD10 Missense_Mutation p.R784W 0.07 tolerated(0.1) probably_damaging(0.937) TCGA-C5-A7CO-01 2 11765420 11765420 C G GREB1 Missense_Mutation p.Q1430E 0.17 tolerated(0.66) benign(0.096) TCGA-C5-A7CO-01 2 11919735 11919735 G A LPIN1 Missense_Mutation p.M356I 0.18 deleterious(0.04) possibly_damaging(0.749) TCGA-C5-A7CO-01 2 130900165 130900165 G A CCDC74B Intron 0.11 TCGA-C5-A7CO-01 2 152476075 152476075 G A NEB Nonsense_Mutation p.Q3588* 0.24 TCGA-C5-A7CO-01 2 163051248 163051248 G A FAP Silent p.I471I 0.55 TCGA-C5-A7CO-01 2 166536555 166536555 G A CSRNP3 3'UTR 0.23 TCGA-C5-A7CO-01 2 167262620 167262620 T G SCN7A Missense_Mutation p.N1507H 0.16 deleterious(0.02) benign(0.002) TCGA-C5-A7CO-01 2 179749674 179749674 G A CCDC141 Missense_Mutation p.S558L 0.22 tolerated(0.41) benign(0.005) TCGA-C5-A7CO-01 2 197064005 197064005 G A HECW2 3'UTR 0.16 TCGA-C5-A7CO-01 2 224824505 224824508 ACCC - MRPL44 Frame_Shift_Del p.Y145* 0.23 TCGA-C5-A7CO-01 2 39213258 39213258 G C SOS1 Missense_Mutation p.P1237A 0.53 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-C5-A7CO-01 2 43452806 43452806 G A ZFP36L2 Missense_Mutation p.S46L 0.16 deleterious(0) possibly_damaging(0.857) TCGA-C5-A7CO-01 2 55436648 55436648 G C CLHC1 Missense_Mutation p.Q236E 0.09 tolerated(0.16) benign(0.103) TCGA-C5-A7CO-01 2 71206872 71206872 G A ANKRD53 Missense_Mutation p.V167M 0.09 deleterious(0) probably_damaging(0.998) TCGA-C5-A7CO-01 3 101451337 101451337 T - CEP97 Frame_Shift_Del p.L191Wfs*4 0.13 TCGA-C5-A7CO-01 3 108149738 108149738 T A MYH15 Nonsense_Mutation p.K1105* 0.14 TCGA-C5-A7CO-01 3 120957831 120957831 G C STXBP5L Missense_Mutation p.E400Q 0.25 tolerated(0.05) probably_damaging(0.998) TCGA-C5-A7CO-01 3 122247475 122247475 G A PARP9 Silent p.L767L 0.13 TCGA-C5-A7CO-01 3 173999278 173999278 C T NLGN1 3'UTR 0.41 TCGA-C5-A7CO-01 3 178916854 178916854 G A PIK3CA Missense_Mutation p.E81K 0.12 deleterious(0) probably_damaging(1) TCGA-C5-A7CO-01 3 23930675 23930675 G C UBE2E1 Missense_Mutation p.D137H 0.24 deleterious(0.01) probably_damaging(0.918) TCGA-C5-A7CO-01 3 32030845 32030845 C A ZNF860 Missense_Mutation p.H92N 0.29 tolerated(0.14) probably_damaging(0.98) TCGA-C5-A7CO-01 3 38627473 38627473 G A SCN5A Silent p.I832I 0.36 TCGA-C5-A7CO-01 3 39307021 39307021 G C CX3CR1 Missense_Mutation p.S359C 0.12 tolerated(0.05) possibly_damaging(0.716) TCGA-C5-A7CO-01 3 47163506 47163506 T C SETD2 Missense_Mutation p.I874V 0.32 tolerated_low_confidence(1) benign(0.001) TCGA-C5-A7CO-01 4 156698760 156698760 G A GUCY1B3 Missense_Mutation p.R88H 0.31 deleterious(0.01) possibly_damaging(0.496) TCGA-C5-A7CO-01 4 48542058 48542058 A G FRYL Missense_Mutation p.L2108S 0.14 deleterious(0) possibly_damaging(0.842) TCGA-C5-A7CO-01 4 6037785 6037785 G A JAKMIP1 Missense_Mutation p.P742L 0.62 tolerated(0.05) benign(0.165) TCGA-C5-A7CO-01 5 112327822 112327822 C T DCP2 Silent p.F70F 0.46 TCGA-C5-A7CO-01 5 140230183 140230183 C G PCDHA9 Missense_Mutation p.I701M 0.12 deleterious_low_confidence(0.04) probably_damaging(0.973) TCGA-C5-A7CO-01 5 140603943 140603943 G A PCDHB14 Missense_Mutation p.R289H 0.47 tolerated_low_confidence(0.25) probably_damaging(0.982) TCGA-C5-A7CO-01 5 176004413 176004413 C G CDHR2 Missense_Mutation p.T403S 0.22 tolerated(0.25) benign(0.41) TCGA-C5-A7CO-01 5 178418889 178418889 C T GRM6 Missense_Mutation p.V234I 0.40 tolerated(0.61) benign(0.022) TCGA-C5-A7CO-01 5 40691969 40691969 C T PTGER4 Missense_Mutation p.S319F 0.46 deleterious(0) possibly_damaging(0.5) TCGA-C5-A7CO-01 5 41382227 41382227 G A PLCXD3 Silent p.C171C 0.28 TCGA-C5-A7CO-01 5 53180768 53180768 C T ARL15 3'UTR 0.16 TCGA-C5-A7CO-01 5 80071547 80071547 G A MSH3 Missense_Mutation p.C763Y 0.80 tolerated(0.48) possibly_damaging(0.454) TCGA-C5-A7CO-01 5 82817176 82817176 T G VCAN Silent p.S1017S 0.78 TCGA-C5-A7CO-01 6 114182766 114182766 G A MARCKS 3'UTR 0.16 TCGA-C5-A7CO-01 6 149997416 149997432 GTGTTTGTGCCAAGAAA - LATS1 Frame_Shift_Del p.F950Ifs*21 0.62 TCGA-C5-A7CO-01 6 167585684 167585684 G C TCP10L2 Missense_Mutation p.E18Q 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-C5-A7CO-01 6 29454755 29454755 C T MAS1L Missense_Mutation p.A309T 0.68 tolerated(0.05) benign(0.01) TCGA-C5-A7CO-01 6 29910398 29910398 G A HLA-A Nonsense_Mutation p.W23* 0.57 TCGA-C5-A7CO-01 6 43006110 43006110 G A CUL7 Silent p.D1640D 0.17 TCGA-C5-A7CO-01 6 43270123 43270123 C T SLC22A7 Missense_Mutation p.A416V 0.21 deleterious(0.04) benign(0.407) TCGA-C5-A7CO-01 6 51921520 51921520 G T PKHD1 Missense_Mutation p.L557I 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A7CO-01 6 74104138 74104138 G A DDX43 5'Flank 0.16 TCGA-C5-A7CO-01 6 8413801 8413801 G A SLC35B3 Missense_Mutation p.T396M 0.71 tolerated_low_confidence(0.1) benign(0.301) TCGA-C5-A7CO-01 7 137801443 137801443 A G AKR1D1 3'UTR 0.09 TCGA-C5-A7CO-01 7 140064280 140064280 G A SLC37A3 Silent p.I101I 0.11 TCGA-C5-A7CO-01 7 140302004 140302004 C T DENND2A Missense_Mutation p.S65N 0.23 tolerated(0.5) benign(0.002) TCGA-C5-A7CO-01 7 142104400 142104400 C G TRBV6-9 Missense_Mutation p.G22A 0.06 tolerated(0.17) benign(0.008) TCGA-C5-A7CO-01 7 142149124 142149124 C T TRBV5-5 Silent p.K49K 0.36 TCGA-C5-A7CO-01 7 143417134 143417134 A T FAM115C Missense_Mutation p.N328Y 0.16 deleterious(0) benign(0.409) TCGA-C5-A7CO-01 7 35944390 35944390 C T SEPT7 3'UTR 0.44 TCGA-C5-A7CO-01 7 38301802 38301802 G T TRGC1 Missense_Mutation p.P117T 0.21 tolerated(0.16) benign(0.009) TCGA-C5-A7CO-01 7 64467013 64467013 G A ERV3-1 5'UTR 0.38 TCGA-C5-A7CO-01 7 74169870 74169873 GTGA - GTF2I Splice_Site p.X952_splice 0.14 TCGA-C5-A7CO-01 8 10396148 10396148 G A PRSS55 Missense_Mutation p.E302K 0.31 tolerated(0.08) possibly_damaging(0.56) TCGA-C5-A7CO-01 8 146107364 146107364 G A ZNF250 Missense_Mutation p.R407C 0.07 tolerated(0.19) possibly_damaging(0.898) TCGA-C5-A7CO-01 8 2808784 2808784 G T CSMD1 Silent p.V3351V 0.38 TCGA-C5-A7CO-01 9 107593363 107593363 G A ABCA1 Nonsense_Mutation p.R579* 0.27 TCGA-C5-A7CO-01 9 123624993 123624993 A G PHF19 Missense_Mutation p.C335R 0.05 tolerated(0.37) benign(0.03) TCGA-C5-A7CO-01 9 138437985 138437985 C T OBP2A 5'Flank 0.39 TCGA-C5-A7CO-01 9 140082274 140082274 C T ANAPC2 Silent p.E133E 0.60 TCGA-C5-A7CO-01 9 21409309 21409309 G A IFNA8 Missense_Mutation p.R45Q 0.54 deleterious(0.02) benign(0.302) TCGA-C5-A7CO-01 9 6498126 6498126 G C UHRF2 Missense_Mutation p.E626Q 0.06 tolerated(0.12) possibly_damaging(0.813) TCGA-C5-A7CO-01 X 128695163 128695163 G A OCRL Missense_Mutation p.E278K 0.14 deleterious(0.01) possibly_damaging(0.708) TCGA-C5-A7CO-01 X 130215717 130215717 C T ARHGAP36 Silent p.S26S 0.25 TCGA-C5-A7CO-01 X 139586614 139586614 C T SOX3 Silent p.P204P 0.28 TCGA-C5-A7CO-01 X 1464225 1464225 C G IL3RA Missense_Mutation p.I27M 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-C5-A7CO-01 X 150891250 150891250 C T FATE1 3'UTR 0.26 TCGA-C5-A7CO-01 X 152858020 152858020 G A FAM58A Nonsense_Mutation p.Q199* 0.63 TCGA-C5-A7CO-01 X 18593569 18593569 C T CDKL5 Missense_Mutation p.R81W 0.11 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-C5-A7CO-01 X 47498360 47498360 G T ELK1 Missense_Mutation p.S196R 0.17 tolerated(0.2) possibly_damaging(0.483) TCGA-C5-A7CO-01 X 48403316 48403316 T C TBC1D25 Missense_Mutation p.L98P 0.33 deleterious(0) possibly_damaging(0.823) TCGA-C5-A7CO-01 X 53564520 53564520 C T HUWE1 Missense_Mutation p.R4045Q 0.39 unknown(0) TCGA-C5-A7CO-01 X 53565407 53565407 G A HUWE1 Missense_Mutation p.R3963C 0.05 unknown(0) TCGA-C5-A7CO-01 X 54959807 54959807 C T PFKFB1 3'UTR 0.37 TCGA-C5-A7CO-01 X 65242372 65242372 A T VSIG4 Intron 0.29 TCGA-C5-A7CO-01 X 66765450 66765450 C T AR Silent p.D154D 0.12 TCGA-C5-A7CO-01 X 69424301 69424301 A G DGAT2L6 Missense_Mutation p.H265R 0.20 deleterious(0.02) probably_damaging(0.91) TCGA-C5-A7CO-01 X 69670155 69670155 G A DLG3 Silent p.A280A 0.09 TCGA-C5-A7CO-01 X 74295234 74295234 G A ABCB7 Missense_Mutation p.P274L 0.32 deleterious(0) probably_damaging(1) TCGA-C5-A7UC-01 10 101090572 101090572 G A CNNM1 Silent p.V476V 0.45 TCGA-C5-A7UC-01 10 118031536 118031536 G C GFRA1 Missense_Mutation p.F2L 0.55 tolerated(0.89) unknown(0) TCGA-C5-A7UC-01 10 124336050 124336050 G T DMBT1 Missense_Mutation p.C140F 0.39 deleterious(0) probably_damaging(0.996) TCGA-C5-A7UC-01 10 26800778 26800778 C G APBB1IP Missense_Mutation p.H212D 0.46 deleterious(0) probably_damaging(1) TCGA-C5-A7UC-01 11 100962563 100962563 C G PGR Missense_Mutation p.D612H 0.04 deleterious(0) probably_damaging(1) TCGA-C5-A7UC-01 11 101918193 101918193 G A C11orf70 5'UTR 0.02 TCGA-C5-A7UC-01 11 103128342 103128342 G A DYNC2H1 Silent p.R3496R 0.02 TCGA-C5-A7UC-01 11 103175392 103175392 C G DYNC2H1 Missense_Mutation p.D3782E 0.02 benign(0.003) TCGA-C5-A7UC-01 11 1213531 1213531 C T MUC5AC RNA 0.03 TCGA-C5-A7UC-01 11 18300528 18300528 C G HPS5 3'Flank 0.64 TCGA-C5-A7UC-01 11 47204045 47204045 G A PACSIN3 Silent p.V40V 0.41 TCGA-C5-A7UC-01 11 65265397 65265397 C T MALAT1 RNA 0.38 TCGA-C5-A7UC-01 11 65488101 65488101 C A RNASEH2C Silent p.P43P 0.62 TCGA-C5-A7UC-01 11 65623692 65623692 C T CFL1 Missense_Mutation p.D9N 0.43 deleterious(0) possibly_damaging(0.706) TCGA-C5-A7UC-01 11 74656094 74656094 C G XRRA1 5'UTR 0.33 TCGA-C5-A7UC-01 12 109670474 109670474 G A ACACB Silent p.R1334R 0.51 TCGA-C5-A7UC-01 12 112670844 112670844 C T HECTD4 Missense_Mutation p.M1841I 0.27 possibly_damaging(0.825) TCGA-C5-A7UC-01 12 112670864 112670864 G T HECTD4 Missense_Mutation p.L1835I 0.25 possibly_damaging(0.616) TCGA-C5-A7UC-01 12 12037483 12037483 G C ETV6 Missense_Mutation p.D372H 0.32 deleterious(0) probably_damaging(0.999) TCGA-C5-A7UC-01 12 32520654 32520654 G A BICD1 Missense_Mutation p.G939R 0.48 tolerated_low_confidence(0.7) benign(0.003) TCGA-C5-A7UC-01 12 58020692 58020692 G A B4GALNT1 Silent p.V479V 0.37 TCGA-C5-A7UC-01 12 7640251 7640251 A C CD163 Missense_Mutation p.L585W 0.47 deleterious(0) probably_damaging(1) TCGA-C5-A7UC-01 12 9307355 9307355 C T PZP Missense_Mutation p.E1211K 0.46 deleterious(0) probably_damaging(0.992) TCGA-C5-A7UC-01 12 96717761 96717761 G C CDK17 Missense_Mutation p.S83C 0.43 deleterious_low_confidence(0.02) benign(0.166) TCGA-C5-A7UC-01 14 105477522 105477522 G C CDCA4 3'UTR 0.36 TCGA-C5-A7UC-01 14 32068519 32068519 G A NUBPL Missense_Mutation p.V106M 0.44 deleterious(0) possibly_damaging(0.89) TCGA-C5-A7UC-01 14 65220501 65220503 TCT - SPTB In_Frame_Del p.E2119del 0.38 TCGA-C5-A7UC-01 14 88652178 88652178 C T KCNK10 Missense_Mutation p.E445K 0.32 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-C5-A7UC-01 15 73853342 73853342 G C NPTN 3'UTR 0.43 TCGA-C5-A7UC-01 15 90996474 90996474 G A IQGAP1 Silent p.L479L 0.47 TCGA-C5-A7UC-01 16 3078714 3078714 C T CCDC64B Missense_Mutation p.E409K 0.69 tolerated(0.05) possibly_damaging(0.563) TCGA-C5-A7UC-01 17 41585300 41585300 G T DHX8 Nonsense_Mutation p.E745* 0.11 TCGA-C5-A7UC-01 17 76355089 76355089 C T SOCS3 Missense_Mutation p.E30K 0.52 tolerated(0.07) benign(0.121) TCGA-C5-A7UC-01 17 76355093 76355093 C G SOCS3 Missense_Mutation p.K28N 0.52 tolerated(0.15) benign(0.02) TCGA-C5-A7UC-01 17 76355225 76355225 C G SOCS3 5'UTR 0.29 TCGA-C5-A7UC-01 19 10404460 10404460 G A ICAM5 Missense_Mutation p.G518R 0.44 deleterious(0) probably_damaging(1) TCGA-C5-A7UC-01 19 15222460 15222460 C T SYDE1 Missense_Mutation p.L479F 0.38 deleterious(0) benign(0.434) TCGA-C5-A7UC-01 19 16238844 16238844 C G RAB8A Silent p.L141L 0.32 TCGA-C5-A7UC-01 19 17615952 17615952 C T SLC27A1 3'UTR 0.33 TCGA-C5-A7UC-01 19 36357423 36357423 C T KIRREL2 3'UTR 0.28 TCGA-C5-A7UC-01 19 474798 474798 C G ODF3L2 5'UTR 0.53 TCGA-C5-A7UC-01 19 54255684 54255684 C G MIR519A1 RNA 0.34 TCGA-C5-A7UC-01 19 56901419 56901419 G A ZNF582 Silent p.G61G 0.32 TCGA-C5-A7UC-01 19 590519 590519 G A HCN2 Missense_Mutation p.E192K 0.38 deleterious(0) probably_damaging(0.998) TCGA-C5-A7UC-01 1 119964673 119964673 G A HSD3B2 Silent p.A183A 0.39 TCGA-C5-A7UC-01 1 152082938 152082938 C G TCHH Missense_Mutation p.E919Q 0.44 unknown(0) TCGA-C5-A7UC-01 1 152082962 152082962 C G TCHH Missense_Mutation p.E911Q 0.40 unknown(0) TCGA-C5-A7UC-01 1 224477278 224477278 C T NVL Missense_Mutation p.E495K 0.36 tolerated(0.33) benign(0.001) TCGA-C5-A7UC-01 1 224563706 224563706 G A CNIH4 3'UTR 0.28 TCGA-C5-A7UC-01 1 226822073 226822073 C G ITPKB 3'UTR 0.46 TCGA-C5-A7UC-01 1 31465320 31465320 G C PUM1 Missense_Mutation p.Q359E 0.34 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-C5-A7UC-01 1 62910594 62910594 G T USP1 Missense_Mutation p.S248I 0.31 tolerated(0.15) benign(0.01) TCGA-C5-A7UC-01 1 66828900 66828900 G C PDE4B Missense_Mutation p.G357A 0.39 deleterious(0) benign(0.002) TCGA-C5-A7UC-01 1 77095225 77095225 G A ST6GALNAC3 3'UTR 0.25 TCGA-C5-A7UC-01 20 33587058 33587058 C T MYH7B Missense_Mutation p.R1506W 0.43 probably_damaging(0.967) TCGA-C5-A7UC-01 22 29190888 29190888 T C XBP1 3'UTR 0.46 TCGA-C5-A7UC-01 2 171264296 171264296 G A MYO3B Silent p.L864L 0.32 TCGA-C5-A7UC-01 2 179582503 179582503 C T TTN Silent p.L8366L 0.53 TCGA-C5-A7UC-01 2 200820195 200820195 G A TYW5 5'UTR 0.33 TCGA-C5-A7UC-01 2 206165403 206165403 G A PARD3B Missense_Mutation p.E717K 0.39 deleterious(0) possibly_damaging(0.487) TCGA-C5-A7UC-01 2 216809669 216809669 G A MREG Nonsense_Mutation p.R188* 0.38 TCGA-C5-A7UC-01 2 231865094 231865094 C T SPATA3 Silent p.R105R 0.30 TCGA-C5-A7UC-01 2 27278881 27278881 G C AGBL5 Missense_Mutation p.E414Q 0.39 tolerated(0.42) benign(0.009) TCGA-C5-A7UC-01 3 111794194 111794194 C T TMPRSS7 Missense_Mutation p.H478Y 0.38 tolerated(0.33) benign(0.003) TCGA-C5-A7UC-01 3 138195301 138195301 C G ESYT3 Nonsense_Mutation p.S864* 0.49 TCGA-C5-A7UC-01 3 155203347 155203347 G T PLCH1 Missense_Mutation p.S932R 0.34 deleterious(0) probably_damaging(0.969) TCGA-C5-A7UC-01 3 181430944 181430944 C G SOX2 Missense_Mutation p.Q266E 0.44 tolerated(0.25) benign(0.177) TCGA-C5-A7UC-01 3 56207477 56207477 C T ERC2 Missense_Mutation p.M382I 0.35 deleterious(0.02) benign(0.1) TCGA-C5-A7UC-01 4 10533273 10533273 C G CLNK Intron 0.46 TCGA-C5-A7UC-01 4 106157306 106157306 C G TET2 Nonsense_Mutation p.S736* 0.48 TCGA-C5-A7UC-01 4 106157380 106157380 C G TET2 Missense_Mutation p.P761A 0.49 tolerated(0.22) benign(0.002) TCGA-C5-A7UC-01 4 184019362 184019362 G A WWC2 5'Flank 0.38 TCGA-C5-A7UC-01 5 129073071 129073071 G T ADAMTS19 3'UTR 0.60 TCGA-C5-A7UC-01 6 150290300 150290300 C T ULBP1 Silent p.F143F 0.40 TCGA-C5-A7UC-01 6 42935238 42935238 C G PEX6 Missense_Mutation p.Q584H 0.42 tolerated(0.55) benign(0.005) TCGA-C5-A7UC-01 6 43307344 43307344 C T ZNF318 Silent p.P1464P 0.42 TCGA-C5-A7UC-01 6 56469029 56469029 C G DST Intron 0.45 TCGA-C5-A7UC-01 6 56480748 56480748 C T DST Intron 0.43 TCGA-C5-A7UC-01 6 65707507 65707507 C T EYS Missense_Mutation p.E743K 0.39 tolerated(0.45) possibly_damaging(0.908) TCGA-C5-A7UC-01 6 88853991 88853991 C T CNR1 Missense_Mutation p.A335T 0.28 tolerated(0.53) benign(0.004) TCGA-C5-A7UC-01 6 96034516 96034516 C T MANEA Silent p.I67I 0.40 TCGA-C5-A7UC-01 7 100682525 100682525 G C MUC17 Missense_Mutation p.E2610Q 0.26 possibly_damaging(0.728) TCGA-C5-A7UC-01 7 155537712 155537712 C T RBM33 Missense_Mutation p.R799C 0.17 deleterious(0) unknown(0) TCGA-C5-A7UC-01 7 27135385 27135385 G A HOXA1 Silent p.G49G 0.11 TCGA-C5-A7UC-01 7 72907165 72907165 G C BAZ1B Missense_Mutation p.H220D 0.29 deleterious(0.01) possibly_damaging(0.818) TCGA-C5-A7UC-01 7 76629629 76629629 C T UPK3B Intron 0.06 TCGA-C5-A7UC-01 7 95025649 95025649 A G PON3 Missense_Mutation p.V5A 0.58 tolerated(0.21) unknown(0) TCGA-C5-A7UC-01 7 98951669 98951669 C G ARPC1A Missense_Mutation p.S213C 0.13 deleterious(0) probably_damaging(1) TCGA-C5-A7UC-01 8 110497378 110497378 G A PKHD1L1 Missense_Mutation p.D3228N 0.27 tolerated(0.35) benign(0.014) TCGA-C5-A7UC-01 8 125464836 125464836 G A TRMT12 3'UTR 0.40 TCGA-C5-A7UC-01 8 145740826 145740826 G - RECQL4 Frame_Shift_Del p.T425Kfs*133 0.60 TCGA-C5-A7UC-01 8 52359699 52359699 G T PXDNL Missense_Mutation p.Q464K 0.35 tolerated(0.12) benign(0.007) TCGA-C5-A7UC-01 9 117822051 117822051 G A TNC Missense_Mutation p.R1422W 0.38 deleterious(0.02) possibly_damaging(0.846) TCGA-C5-A7UC-01 9 13140127 13140127 C G MPDZ Missense_Mutation p.E1288Q 0.46 tolerated(0.09) benign(0.185) TCGA-C5-A7UC-01 9 133914593 133914593 G A LAMC3 Missense_Mutation p.R414H 0.38 deleterious(0.02) benign(0.12) TCGA-C5-A7UC-01 9 99522754 99522754 A - ZNF510 Frame_Shift_Del p.Y120Tfs*6 0.22 TCGA-C5-A7UC-01 X 134711302 134711302 C G DDX26B Missense_Mutation p.S653W 0.33 deleterious(0.01) possibly_damaging(0.469) TCGA-C5-A7UC-01 X 135574302 135574302 C G BRS3 Missense_Mutation p.S323C 0.37 deleterious(0) probably_damaging(1) TCGA-C5-A7UC-01 X 37027353 37027353 C T FAM47C Silent p.R290R 0.04 TCGA-C5-A7UC-01 X 46382534 46382534 G C ZNF674 Intron 0.31 TCGA-C5-A7UC-01 X 69723685 69723686 - C DLG3 3'UTR 0.30 TCGA-C5-A7UE-01 10 101690498 101690498 C G DNMBP Intron 0.43 TCGA-C5-A7UE-01 10 121356085 121356085 G A TIAL1 5'Flank 0.11 TCGA-C5-A7UE-01 10 134016186 134016186 C T DPYSL4 Missense_Mutation p.R440W 0.09 deleterious(0) possibly_damaging(0.799) TCGA-C5-A7UE-01 10 21141488 21141488 C T NEBL Missense_Mutation p.V332I 0.23 tolerated(0.21) benign(0.006) TCGA-C5-A7UE-01 10 24835544 24835544 G A KIAA1217 3'UTR 0.27 TCGA-C5-A7UE-01 10 5040883 5040883 G C AKR1C2 Missense_Mutation p.F168L 0.16 deleterious(0.01) probably_damaging(1) TCGA-C5-A7UE-01 10 92508968 92508968 A G HTR7 Missense_Mutation p.L308P 0.15 tolerated(0.1) possibly_damaging(0.457) TCGA-C5-A7UE-01 10 98336426 98336426 T C TM9SF3 Missense_Mutation p.E88G 0.14 deleterious(0) possibly_damaging(0.772) TCGA-C5-A7UE-01 11 106681012 106681012 T C GUCY1A2 Missense_Mutation p.K467E 0.19 deleterious(0) probably_damaging(0.958) TCGA-C5-A7UE-01 11 123908853 123908853 C A OR10G7 Missense_Mutation p.V286L 0.04 deleterious(0.02) possibly_damaging(0.468) TCGA-C5-A7UE-01 11 124740508 124740508 G A ROBO3 Missense_Mutation p.R306Q 0.13 tolerated(0.28) benign(0.017) TCGA-C5-A7UE-01 11 43365655 43365655 G C API5 3'Flank 0.05 TCGA-C5-A7UE-01 11 46419297 46419297 G A AMBRA1 Silent p.A1110A 0.07 TCGA-C5-A7UE-01 11 49221981 49221981 C G FOLH1 Missense_Mutation p.Q79H 0.16 deleterious(0.03) benign(0.113) TCGA-C5-A7UE-01 11 57799099 57799099 C T OR6Q1 Silent p.I225I 0.13 TCGA-C5-A7UE-01 11 66311238 66311238 G A ZDHHC24 Nonsense_Mutation p.R166* 0.15 TCGA-C5-A7UE-01 11 66468011 66468011 C T SPTBN2 Missense_Mutation p.V1187M 0.21 tolerated(0.16) possibly_damaging(0.904) TCGA-C5-A7UE-01 11 67402529 67402529 C T TBX10 Missense_Mutation p.M71I 0.17 deleterious(0.02) possibly_damaging(0.881) TCGA-C5-A7UE-01 11 68453095 68453095 G A GAL Missense_Mutation p.A39T 0.12 deleterious(0) probably_damaging(0.999) TCGA-C5-A7UE-01 11 7982282 7982282 G A NLRP10 Missense_Mutation p.R293W 0.16 tolerated(0.06) benign(0.391) TCGA-C5-A7UE-01 12 100452951 100452951 A G UHRF1BP1L Missense_Mutation p.W702R 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-C5-A7UE-01 12 10051479 10051479 G A KLRF2 3'Flank 0.10 TCGA-C5-A7UE-01 12 103696329 103696329 C T C12orf42 Missense_Mutation p.A214T 0.13 tolerated(0.48) possibly_damaging(0.877) TCGA-C5-A7UE-01 12 110367803 110367803 G A GIT2 3'UTR 0.33 TCGA-C5-A7UE-01 12 123469783 123469783 G A PITPNM2 3'UTR 0.23 TCGA-C5-A7UE-01 12 133256810 133256810 T A POLE Splice_Site p.X96_splice 0.26 TCGA-C5-A7UE-01 12 14577801 14577802 - A ATF7IP Frame_Shift_Ins p.N320Kfs*4 0.18 TCGA-C5-A7UE-01 12 21448655 21448655 T A SLCO1A2 Missense_Mutation p.T383S 0.13 tolerated(0.9) benign(0.074) TCGA-C5-A7UE-01 12 2786778 2786778 G A CACNA1C Intron 0.24 TCGA-C5-A7UE-01 12 52168096 52168096 G A SCN8A Missense_Mutation p.V1257I 0.13 deleterious(0.02) benign(0.107) TCGA-C5-A7UE-01 12 53565576 53565576 C T CSAD Intron 0.38 TCGA-C5-A7UE-01 12 54115830 54115830 C T CALCOCO1 Silent p.T196T 0.33 TCGA-C5-A7UE-01 12 55641611 55641611 T C OR6C74 Silent p.S180S 0.16 TCGA-C5-A7UE-01 12 81007444 81007444 C T PTPRQ Silent p.F1660F 0.13 TCGA-C5-A7UE-01 12 81732956 81732956 T G PPFIA2 Intron 0.12 TCGA-C5-A7UE-01 12 88560202 88560202 C A TMTC3 Nonsense_Mutation p.S298* 0.16 TCGA-C5-A7UE-01 12 94658941 94658941 A T PLXNC1 Missense_Mutation p.K1179N 0.08 deleterious(0) probably_damaging(1) TCGA-C5-A7UE-01 12 96059631 96059631 C T NTN4 Missense_Mutation p.E569K 0.20 tolerated(0.06) possibly_damaging(0.708) TCGA-C5-A7UE-01 13 111870159 111870159 G A ARHGEF7 Nonsense_Mutation p.W222* 0.12 TCGA-C5-A7UE-01 13 26620798 26620798 G A SHISA2 Silent p.Y247Y 0.20 TCGA-C5-A7UE-01 13 49795318 49795318 G A MLNR Missense_Mutation p.R282Q 0.73 tolerated(0.8) benign(0.028) TCGA-C5-A7UE-01 14 105856307 105856308 AG - PACS2 Frame_Shift_Del p.E682Vfs*161 0.20 TCGA-C5-A7UE-01 14 60945082 60945082 G A C14orf39 Missense_Mutation p.R87C 0.16 deleterious(0.01) benign(0.185) TCGA-C5-A7UE-01 14 64593093 64593093 G A SYNE2 Missense_Mutation p.E4535K 0.15 possibly_damaging(0.716) TCGA-C5-A7UE-01 14 65268949 65268949 C T SPTB Silent p.T187T 0.11 TCGA-C5-A7UE-01 14 92961326 92961327 - T SLC24A4 3'UTR 0.22 TCGA-C5-A7UE-01 15 102303043 102303043 G A DNM1P47 RNA 0.24 TCGA-C5-A7UE-01 15 25421989 25421989 T C SNORD115-4 RNA 0.14 TCGA-C5-A7UE-01 15 51696940 51696940 T G GLDN Missense_Mutation p.L549V 0.13 tolerated_low_confidence(0.26) benign(0.049) TCGA-C5-A7UE-01 15 52892428 52892428 G C FAM214A Missense_Mutation p.R849G 0.30 deleterious(0.02) benign(0.079) TCGA-C5-A7UE-01 15 55972266 55972266 G A PRTG Missense_Mutation p.T320I 0.11 deleterious(0.04) possibly_damaging(0.598) TCGA-C5-A7UE-01 15 72690998 72690998 C A TMEM202 Missense_Mutation p.T29N 0.09 deleterious(0.01) possibly_damaging(0.787) TCGA-C5-A7UE-01 15 76994121 76994121 C T SCAPER Missense_Mutation p.R829H 0.16 deleterious(0.02) probably_damaging(1) TCGA-C5-A7UE-01 15 81440923 81440923 A G C15orf26 3'UTR 0.09 TCGA-C5-A7UE-01 15 86123894 86123894 C T AKAP13 Silent p.L865L 0.11 TCGA-C5-A7UE-01 15 90129033 90129033 C T TICRR Missense_Mutation p.T424I 0.10 tolerated(0.06) benign(0.005) TCGA-C5-A7UE-01 15 91043332 91043332 G A IQGAP1 Missense_Mutation p.G1656R 0.20 tolerated(0.16) benign(0.149) TCGA-C5-A7UE-01 16 11010239 11010239 T C CIITA Silent p.S995S 0.19 TCGA-C5-A7UE-01 16 55725925 55725925 C G SLC6A2 Silent p.A293A 0.13 TCGA-C5-A7UE-01 17 18025307 18025307 C A MYO15A Missense_Mutation p.L1065M 0.23 unknown(0) TCGA-C5-A7UE-01 17 34062178 34062178 C T RASL10B 5'UTR 0.18 TCGA-C5-A7UE-01 17 40818127 40818127 C T TUBG2 Missense_Mutation p.T289M 0.16 deleterious(0.02) possibly_damaging(0.48) TCGA-C5-A7UE-01 17 68173231 68173232 AA - KCNJ2 3'UTR 0.21 TCGA-C5-A7UE-01 17 73501032 73501032 G A CASKIN2 Silent p.I351I 0.22 TCGA-C5-A7UE-01 17 77756006 77756006 C T CBX2 Intron 0.18 TCGA-C5-A7UE-01 17 8349087 8349087 G A NDEL1 Missense_Mutation p.A49T 0.13 tolerated(0.05) benign(0.018) TCGA-C5-A7UE-01 18 21703865 21703865 C G TTC39C Missense_Mutation p.F418L 0.36 tolerated(0.42) benign(0.036) TCGA-C5-A7UE-01 18 3126818 3126818 C G MYOM1 Missense_Mutation p.D958H 0.20 tolerated(0.06) possibly_damaging(0.811) TCGA-C5-A7UE-01 18 6239824 6239824 G C L3MBTL4 Silent p.A200A 0.08 TCGA-C5-A7UE-01 18 77748266 77748266 C G TXNL4A Missense_Mutation p.E43Q 0.12 deleterious(0.03) possibly_damaging(0.51) TCGA-C5-A7UE-01 19 11106996 11106996 G T SMARCA4 Silent p.L567L 0.28 TCGA-C5-A7UE-01 19 12224588 12224588 G C ZNF788 3'UTR 0.14 TCGA-C5-A7UE-01 19 13482538 13482538 C T CACNA1A Missense_Mutation p.V199M 0.17 possibly_damaging(0.596) TCGA-C5-A7UE-01 19 14830009 14830009 G C ZNF333 Missense_Mutation p.E624Q 0.18 tolerated(0.2) possibly_damaging(0.728) TCGA-C5-A7UE-01 19 17756553 17756553 G A UNC13A Silent p.D762D 0.10 TCGA-C5-A7UE-01 19 19466191 19466191 C A MAU2 Missense_Mutation p.N586K 0.11 tolerated(0.68) benign(0.085) TCGA-C5-A7UE-01 19 19616222 19616222 G T GATAD2A Missense_Mutation p.R614L 0.17 deleterious(0) probably_damaging(0.999) TCGA-C5-A7UE-01 19 19753385 19753385 G A GMIP Silent p.I21I 0.17 TCGA-C5-A7UE-01 19 22154844 22154844 C G ZNF208 Missense_Mutation p.E998Q 0.12 deleterious(0.03) benign(0.378) TCGA-C5-A7UE-01 19 35863116 35863116 C T GPR42 Silent p.A285A 0.25 TCGA-C5-A7UE-01 19 36530340 36530340 C G THAP8 Missense_Mutation p.R186T 0.17 deleterious(0) possibly_damaging(0.469) TCGA-C5-A7UE-01 19 37130768 37130768 C T ZNF461 Missense_Mutation p.G160D 0.07 tolerated(0.1) benign(0.019) TCGA-C5-A7UE-01 19 38855535 38855535 C T CATSPERG Missense_Mutation p.T827M 0.12 tolerated(0.11) possibly_damaging(0.897) TCGA-C5-A7UE-01 19 4054919 4054919 C A ZBTB7A Silent p.V104V 0.12 TCGA-C5-A7UE-01 19 49558222 49558222 G A CGB7 Missense_Mutation p.A20V 0.25 tolerated(0.08) possibly_damaging(0.852) TCGA-C5-A7UE-01 19 52909224 52909224 C G ZNF528 Missense_Mutation p.P27R 0.13 deleterious(0.01) probably_damaging(0.971) TCGA-C5-A7UE-01 19 53117245 53117245 G T ZNF83 Missense_Mutation p.H191Q 0.33 tolerated(0.27) benign(0.009) TCGA-C5-A7UE-01 19 53644262 53644262 T G ZNF347 Silent p.R608R 0.05 TCGA-C5-A7UE-01 19 55481607 55481607 T A NLRP2 Missense_Mutation p.V75D 0.10 deleterious(0) possibly_damaging(0.9) TCGA-C5-A7UE-01 19 55481608 55481608 C A NLRP2 Silent p.V75V 0.10 TCGA-C5-A7UE-01 19 7670187 7670187 C T CAMSAP3 Missense_Mutation p.T75I 0.09 tolerated(0.15) benign(0.279) TCGA-C5-A7UE-01 19 9056578 9056578 C A MUC16 Missense_Mutation p.A10290S 0.33 benign(0.092) TCGA-C5-A7UE-01 1 151681484 151681484 C T CELF3 Missense_Mutation p.R159Q 0.18 tolerated(1) benign(0.179) TCGA-C5-A7UE-01 1 159558217 159558217 A G APCS Missense_Mutation p.T131A 0.25 deleterious(0) benign(0.014) TCGA-C5-A7UE-01 1 167779063 167779063 G C ADCY10 Nonsense_Mutation p.S1562* 0.12 TCGA-C5-A7UE-01 1 19166295 19166295 G T TAS1R2 Missense_Mutation p.S773Y 0.27 tolerated(1) benign(0.16) TCGA-C5-A7UE-01 1 196621158 196621158 T A CFH 5'UTR 0.16 TCGA-C5-A7UE-01 1 196759065 196759065 C G CFHR3 Intron 0.29 TCGA-C5-A7UE-01 1 196801126 196801126 A C CFHR1 Missense_Mutation p.R330S 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.904) TCGA-C5-A7UE-01 1 204438027 204438027 C T PIK3C2B Missense_Mutation p.G302S 0.27 tolerated(0.3) benign(0.002) TCGA-C5-A7UE-01 1 207648498 207648498 C T CR2 Missense_Mutation p.R885C 0.16 tolerated(0.12) possibly_damaging(0.827) TCGA-C5-A7UE-01 1 217824440 217824440 C T SPATA17 Missense_Mutation p.H54Y 0.17 tolerated(1) benign(0.001) TCGA-C5-A7UE-01 1 223116463 223116463 T C DISP1 Missense_Mutation p.C100R 0.17 tolerated(0.18) benign(0.002) TCGA-C5-A7UE-01 1 228646121 228646121 G A HIST3H2BB Silent p.T97T 0.09 TCGA-C5-A7UE-01 1 229596401 229596401 T A NUP133 Missense_Mutation p.H934L 0.11 deleterious(0.01) probably_damaging(0.954) TCGA-C5-A7UE-01 1 243777040 243777040 G A AKT3 Missense_Mutation p.S210F 0.18 deleterious(0.01) benign(0.285) TCGA-C5-A7UE-01 1 33323972 33323972 C T S100PBP 3'UTR 0.30 TCGA-C5-A7UE-01 1 35453309 35453309 T C ZMYM6 Missense_Mutation p.E1125G 0.09 tolerated_low_confidence(0.07) benign(0.002) TCGA-C5-A7UE-01 1 3731769 3731769 C G CEP104 3'UTR 0.15 TCGA-C5-A7UE-01 1 51875362 51875362 G C EPS15 Missense_Mutation p.Q374E 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-C5-A7UE-01 1 65117933 65117933 G A CACHD1 Missense_Mutation p.E443K 0.12 deleterious(0.01) probably_damaging(0.932) TCGA-C5-A7UE-01 1 82418681 82418681 G T LPHN2 Intron 0.26 TCGA-C5-A7UE-01 1 9667732 9667732 G A TMEM201 Silent p.L426L 0.18 TCGA-C5-A7UE-01 20 33891798 33891798 C T UQCC1 Silent p.E280E 0.09 TCGA-C5-A7UE-01 20 47862456 47862456 T A ZNFX1 3'UTR 0.26 TCGA-C5-A7UE-01 20 58496496 58496496 A G SYCP2 Missense_Mutation p.C13R 0.15 tolerated(0.11) probably_damaging(0.914) TCGA-C5-A7UE-01 21 11029685 11029685 T C BAGE2 RNA 0.04 TCGA-C5-A7UE-01 21 47831564 47831564 C T PCNT Silent p.F1859F 0.35 TCGA-C5-A7UE-01 22 35790141 35790141 C T HMOX1 3'UTR 0.47 TCGA-C5-A7UE-01 22 38686760 38686760 A - CSNK1E 3'UTR 0.19 TCGA-C5-A7UE-01 22 43529286 43529286 G C MCAT Missense_Mutation p.I312M 0.34 deleterious(0.03) possibly_damaging(0.515) TCGA-C5-A7UE-01 2 170425736 170425736 A G FASTKD1 Missense_Mutation p.L135P 0.27 deleterious(0) probably_damaging(0.969) TCGA-C5-A7UE-01 2 200792808 200792808 G C C2orf69 3'UTR 0.10 TCGA-C5-A7UE-01 2 202136248 202136248 C T CASP8 Silent p.L164L 0.15 TCGA-C5-A7UE-01 2 202136259 202136259 C T CASP8 Missense_Mutation p.S168L 0.15 deleterious(0) possibly_damaging(0.767) TCGA-C5-A7UE-01 2 207804333 207804333 C T CPO Silent p.L4L 0.29 TCGA-C5-A7UE-01 2 21246399 21246399 T C APOB Missense_Mutation p.N868D 0.21 benign(0.308) TCGA-C5-A7UE-01 2 242021136 242021136 A G SNED1 Missense_Mutation p.T1321A 0.10 deleterious(0.01) benign(0.246) TCGA-C5-A7UE-01 2 242167994 242167994 G A AC104841.2 3'UTR 0.38 TCGA-C5-A7UE-01 2 24916163 24916163 G A NCOA1 Missense_Mutation p.R252Q 0.14 deleterious(0.02) probably_damaging(0.981) TCGA-C5-A7UE-01 2 49210063 49210063 C T FSHR Missense_Mutation p.G219E 0.06 deleterious(0) probably_damaging(0.964) TCGA-C5-A7UE-01 2 70676562 70676562 A G TGFA 3'UTR 0.23 TCGA-C5-A7UE-01 2 71043923 71043923 G A CLEC4F Missense_Mutation p.T197M 0.21 deleterious(0.04) benign(0.168) TCGA-C5-A7UE-01 2 71058944 71058944 G A CD207 Silent p.L242L 0.34 TCGA-C5-A7UE-01 2 90121709 90121709 C G IGKV1D-17 Missense_Mutation p.P18A 0.16 deleterious(0.03) benign(0.168) TCGA-C5-A7UE-01 3 112068598 112068598 C T CD200 Missense_Mutation p.S270F 0.08 tolerated(0.11) probably_damaging(0.961) TCGA-C5-A7UE-01 3 134978654 134978654 A G EPHB1 3'UTR 0.11 TCGA-C5-A7UE-01 3 142272219 142272219 T C ATR Silent p.V885V 0.09 TCGA-C5-A7UE-01 3 143710342 143710342 C T C3orf58 3'UTR 0.08 TCGA-C5-A7UE-01 3 157213148 157213148 G A VEPH1 5'UTR 0.11 TCGA-C5-A7UE-01 3 164697172 164697172 G T SI Missense_Mutation p.P1821Q 0.18 tolerated(0.7) benign(0.017) TCGA-C5-A7UE-01 3 184059910 184059910 C G FAM131A Missense_Mutation p.R128G 0.18 deleterious(0) probably_damaging(0.969) TCGA-C5-A7UE-01 3 185146682 185146682 G A MAP3K13 Missense_Mutation p.V105M 0.08 tolerated(0.12) benign(0.002) TCGA-C5-A7UE-01 3 194080384 194080384 G A LRRC15 Silent p.S469S 0.07 TCGA-C5-A7UE-01 3 195506546 195506546 G A MUC4 Missense_Mutation p.L3969F 0.13 probably_damaging(0.993) TCGA-C5-A7UE-01 3 35786005 35786005 G C ARPP21 Intron 0.21 TCGA-C5-A7UE-01 3 49094619 49094619 G A QRICH1 Silent p.N338N 0.61 TCGA-C5-A7UE-01 3 9760188 9760188 G A CPNE9 Silent p.A381A 0.43 TCGA-C5-A7UE-01 3 97677937 97677937 G A MINA Silent p.A213A 0.12 TCGA-C5-A7UE-01 4 134072049 134072049 C G PCDH10 Missense_Mutation p.Q252E 0.14 tolerated(0.1) probably_damaging(0.966) TCGA-C5-A7UE-01 4 2822423 2822423 G A SH3BP2 Missense_Mutation p.V84M 0.13 deleterious(0) probably_damaging(1) TCGA-C5-A7UE-01 4 46042689 46042689 A T GABRG1 3'UTR 0.27 TCGA-C5-A7UE-01 4 69692191 69692191 T C UGT2B10 Missense_Mutation p.W355R 0.16 deleterious(0) benign(0.444) TCGA-C5-A7UE-01 4 90816728 90816728 C T MMRN1 Silent p.F202F 0.15 TCGA-C5-A7UE-01 5 106717040 106717040 G A EFNA5 Silent p.G201G 0.11 TCGA-C5-A7UE-01 5 140531422 140531422 C T PCDHB6 Silent p.R528R 0.14 TCGA-C5-A7UE-01 5 145428792 145428792 G A SH3RF2 Missense_Mutation p.V436I 0.21 deleterious(0.02) benign(0.426) TCGA-C5-A7UE-01 5 150914120 150914120 G A FAT2 Nonsense_Mutation p.R3093* 0.20 TCGA-C5-A7UE-01 5 154185505 154185505 A C LARP1 Missense_Mutation p.K794Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-C5-A7UE-01 5 38407217 38407217 C A EGFLAM Silent p.T372T 0.30 TCGA-C5-A7UE-01 5 666135 666135 C T TPPP Missense_Mutation p.E139K 0.10 tolerated(0.43) benign(0.056) TCGA-C5-A7UE-01 5 67522531 67522531 G A PIK3R1 Missense_Mutation p.A10T 0.20 deleterious(0) probably_damaging(0.924) TCGA-C5-A7UE-01 5 67522532 67522532 C T PIK3R1 Missense_Mutation p.A10V 0.19 deleterious(0.03) probably_damaging(0.962) TCGA-C5-A7UE-01 5 86672329 86672329 C T RASA1 Nonsense_Mutation p.R711* 0.14 TCGA-C5-A7UE-01 6 106967421 106967421 C G AIM1 Missense_Mutation p.Q372E 0.20 tolerated_low_confidence(0.64) benign(0.003) TCGA-C5-A7UE-01 6 109703435 109703435 G A CD164 Silent p.S49S 0.13 TCGA-C5-A7UE-01 6 109935385 109935385 C T AK9 Splice_Site p.X537_splice 0.10 TCGA-C5-A7UE-01 6 132014695 132014695 T C ENPP3 Missense_Mutation p.L448P 0.13 deleterious(0) probably_damaging(0.981) TCGA-C5-A7UE-01 6 147067229 147067229 A G ADGB Missense_Mutation p.K1117E 0.09 tolerated(0.17) possibly_damaging(0.468) TCGA-C5-A7UE-01 6 167787843 167787843 C T TCP10 Missense_Mutation p.R262Q 0.12 tolerated(0.55) benign(0) TCGA-C5-A7UE-01 6 25435767 25435767 C T LRRC16A Silent p.D102D 0.24 TCGA-C5-A7UE-01 6 26370698 26370698 G - BTN3A2 Frame_Shift_Del p.V195Lfs*10 0.08 TCGA-C5-A7UE-01 6 30153705 30153705 A G TRIM26 Missense_Mutation p.V523A 0.12 deleterious(0.01) unknown(0) TCGA-C5-A7UE-01 6 31615562 31615562 C T BAG6 Silent p.P204P 0.12 TCGA-C5-A7UE-01 6 33263121 33263121 G A RGL2 Missense_Mutation p.R367W 0.22 deleterious(0) probably_damaging(0.998) TCGA-C5-A7UE-01 6 36713166 36713166 T A CPNE5 Missense_Mutation p.R443W 0.07 deleterious(0.01) probably_damaging(0.937) TCGA-C5-A7UE-01 6 37618006 37618006 G A MDGA1 Silent p.D496D 0.16 TCGA-C5-A7UE-01 6 65301316 65301316 C G EYS Missense_Mutation p.E1482Q 0.08 tolerated(0.07) benign(0.202) TCGA-C5-A7UE-01 6 70978539 70978539 G C COL9A1 Missense_Mutation p.R419G 0.20 probably_damaging(0.912) TCGA-C5-A7UE-01 6 7402920 7402920 C T RIOK1 Missense_Mutation p.R220W 0.10 deleterious(0) probably_damaging(1) TCGA-C5-A7UE-01 6 93951064 93951064 T A EPHA7 3'UTR 0.33 TCGA-C5-A7UE-01 6 99930623 99930623 A G USP45 Intron 0.04 TCGA-C5-A7UE-01 7 114619615 114619615 A C MDFIC Missense_Mutation p.E200A 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-C5-A7UE-01 7 123329188 123329188 T A WASL Missense_Mutation p.E455V 0.14 tolerated(0.09) possibly_damaging(0.841) TCGA-C5-A7UE-01 7 141635692 141635692 T C CLEC5A Silent p.E89E 0.18 TCGA-C5-A7UE-01 7 150648917 150648917 C T KCNH2 Missense_Mutation p.G522R 0.29 deleterious(0) probably_damaging(0.996) TCGA-C5-A7UE-01 7 156803067 156803067 C T MNX1 5'UTR 0.42 TCGA-C5-A7UE-01 7 1590534 1590534 A T TMEM184A Missense_Mutation p.F102I 0.19 tolerated(0.08) benign(0.019) TCGA-C5-A7UE-01 7 1785391 1785391 G A ELFN1 Missense_Mutation p.G387R 0.34 deleterious(0.01) possibly_damaging(0.531) TCGA-C5-A7UE-01 7 24703216 24703216 T G MPP6 Missense_Mutation p.V220G 0.20 deleterious(0) probably_damaging(0.974) TCGA-C5-A7UE-01 7 27282636 27282636 C T EVX1 5'UTR 0.38 TCGA-C5-A7UE-01 7 29606585 29606585 G A PRR15 3'UTR 0.20 TCGA-C5-A7UE-01 7 36406537 36406537 T C KIAA0895 Intron 0.33 TCGA-C5-A7UE-01 7 37989929 37989929 G A EPDR1 Silent p.S202S 0.23 TCGA-C5-A7UE-01 7 43906468 43906468 G A MRPS24 Missense_Mutation p.R112C 0.35 deleterious(0) probably_damaging(0.996) TCGA-C5-A7UE-01 7 4802213 4802213 A C FOXK1 3'UTR 0.19 TCGA-C5-A7UE-01 7 72861622 72861623 - TCC BAZ1B In_Frame_Ins p.E1273dup 0.26 TCGA-C5-A7UE-01 7 73609171 73609171 C T EIF4H Silent p.L190L 0.14 TCGA-C5-A7UE-01 7 93605249 93605249 C A AC006378.2 Intron 0.35 TCGA-C5-A7UE-01 7 99693763 99693763 G C MCM7 Nonsense_Mutation p.S410* 0.34 TCGA-C5-A7UE-01 8 21767160 21767160 C T DOK2 Missense_Mutation p.V301M 0.08 deleterious(0.04) possibly_damaging(0.852) TCGA-C5-A7UE-01 8 37794817 37794817 T C GOT1L1 Missense_Mutation p.D166G 0.17 tolerated(0.28) benign(0.001) TCGA-C5-A7UE-01 8 53447151 53447151 T C FAM150A 3'UTR 0.19 TCGA-C5-A7UE-01 8 57905808 57905808 A C IMPAD1 Missense_Mutation p.S113A 0.42 deleterious(0.01) probably_damaging(1) TCGA-C5-A7UE-01 9 101900342 101900342 T A TGFBR1 Missense_Mutation p.I259N 0.21 deleterious(0) probably_damaging(1) TCGA-C5-A7UE-01 9 101900343 101900343 C T TGFBR1 Silent p.I259I 0.21 TCGA-C5-A7UE-01 9 102628749 102628749 A T NR4A3 3'UTR 0.38 TCGA-C5-A7UE-01 9 117848831 117848831 C A TNC Missense_Mutation p.E393D 0.20 tolerated(0.2) possibly_damaging(0.755) TCGA-C5-A7UE-01 9 13408411 13408411 C A RP11-536O18.2 RNA 0.34 TCGA-C5-A7UE-01 9 140000598 140000598 C A MAN1B1 Missense_Mutation p.Q426K 0.19 tolerated(1) benign(0) TCGA-C5-A7UE-01 9 2193017 2193017 T G SMARCA2 3'UTR 0.29 TCGA-C5-A7UE-01 9 28295239 28295239 C T LINGO2 5'UTR 0.12 TCGA-C5-A7UE-01 9 77427293 77427293 A G TRPM6 Silent p.F455F 0.11 TCGA-C5-A7UE-01 9 8449781 8449781 G T PTPRD Missense_Mutation p.P1311H 0.16 tolerated(0.06) possibly_damaging(0.498) TCGA-C5-A7UE-01 9 95778055 95778055 C T FGD3 Missense_Mutation p.R407W 0.16 deleterious(0.01) probably_damaging(1) TCGA-C5-A7UE-01 X 100531425 100531425 C G TAF7L Missense_Mutation p.E347D 0.12 tolerated(0.94) benign(0.016) TCGA-C5-A7UE-01 X 100531436 100531436 C G TAF7L Missense_Mutation p.D344H 0.11 tolerated(0.08) possibly_damaging(0.778) TCGA-C5-A7UE-01 X 134711238 134711238 A T DDX26B Missense_Mutation p.R632W 0.13 deleterious(0) benign(0.157) TCGA-C5-A7UE-01 X 135122307 135122307 C T SLC9A6 Silent p.I600I 0.06 TCGA-C5-A7UE-01 X 135430288 135430288 A C GPR112 Missense_Mutation p.N1475H 0.15 tolerated(0.06) possibly_damaging(0.862) TCGA-C5-A7UE-01 X 153694021 153694021 C T PLXNA3 Missense_Mutation p.A788V 0.18 tolerated(0.1) probably_damaging(0.999) TCGA-C5-A7UE-01 X 19391729 19391729 G A MAP3K15 Missense_Mutation p.P953L 0.41 tolerated(0.1) benign(0.167) TCGA-C5-A7UE-01 X 2161134 2161134 G A DHRSX Missense_Mutation p.T245M 0.12 deleterious(0) probably_damaging(0.996) TCGA-C5-A7UE-01 X 24578678 24578678 A G PCYT1B 3'Flank 0.40 TCGA-C5-A7UE-01 X 26157301 26157301 G A MAGEB18 Missense_Mutation p.A67T 0.18 tolerated(0.14) benign(0.113) TCGA-C5-A7UE-01 X 47919006 47919006 C T ZNF630 Silent p.K275K 0.14 TCGA-C5-A7UE-01 X 65486376 65486376 T C HEPH Silent p.V1167V 0.14 TCGA-C5-A7UE-01 X 73963960 73963960 C G KIAA2022 Silent p.R144R 0.16 TCGA-C5-A7UE-01 X 78426933 78426933 G A GPR174 Silent p.L143L 0.30 TCGA-C5-A7UH-01 10 101637012 101637012 C T DNMBP Missense_Mutation p.E1544K 0.41 deleterious(0.02) possibly_damaging(0.804) TCGA-C5-A7UH-01 10 103427677 103427677 G A FBXW4 Nonsense_Mutation p.R246* 0.32 TCGA-C5-A7UH-01 10 103909858 103909858 C G PPRC1 3'UTR 0.42 TCGA-C5-A7UH-01 10 108427547 108427547 C G SORCS1 Missense_Mutation p.E735Q 0.25 deleterious(0) probably_damaging(0.944) TCGA-C5-A7UH-01 10 111877134 111877134 T A ADD3 Missense_Mutation p.I174K 0.39 deleterious(0) probably_damaging(0.984) TCGA-C5-A7UH-01 10 115947635 115947636 GG A TDRD1 Frame_Shift_Del p.E16Kfs*7 0.36 TCGA-C5-A7UH-01 10 118888855 118888855 G A VAX1 3'Flank 0.29 TCGA-C5-A7UH-01 10 120871374 120871374 C G FAM45A Missense_Mutation p.S89C 0.24 tolerated(0.06) probably_damaging(0.968) TCGA-C5-A7UH-01 10 121214880 121214880 G A GRK5 3'UTR 0.22 TCGA-C5-A7UH-01 10 12257792 12257792 C T CDC123 Silent p.L97L 0.41 TCGA-C5-A7UH-01 10 16960771 16960771 C T CUBN Missense_Mutation p.D2284N 0.47 tolerated(0.21) benign(0.246) TCGA-C5-A7UH-01 10 73039658 73039658 C - UNC5B Frame_Shift_Del p.P54Hfs*7 0.20 TCGA-C5-A7UH-01 10 74992909 74992909 G A FAM149B1 Missense_Mutation p.R447K 0.48 deleterious(0.04) probably_damaging(0.952) TCGA-C5-A7UH-01 10 75481142 75481142 G A RP11-574K11.28 RNA 0.37 TCGA-C5-A7UH-01 10 88719858 88719858 C T SNCG Silent p.I88I 0.26 TCGA-C5-A7UH-01 10 91191846 91191846 C T SLC16A12 3'UTR 0.37 TCGA-C5-A7UH-01 10 91533786 91533786 G A KIF20B Missense_Mutation p.R1775Q 0.35 deleterious(0.01) benign(0.211) TCGA-C5-A7UH-01 10 93040554 93040554 G A PCGF5 3'UTR 0.38 TCGA-C5-A7UH-01 10 93699793 93699793 G A BTAF1 Missense_Mutation p.E75K 0.31 tolerated(0.51) benign(0.005) TCGA-C5-A7UH-01 10 98745543 98745543 G C C10orf12 3'UTR 0.46 TCGA-C5-A7UH-01 11 130108370 130108370 C T ZBTB44 Silent p.Q412Q 0.58 TCGA-C5-A7UH-01 11 17899778 17899778 G C SERGEF Nonsense_Mutation p.S342* 0.50 TCGA-C5-A7UH-01 11 18319183 18319183 G C HPS5 Missense_Mutation p.Q416E 0.62 deleterious(0.02) possibly_damaging(0.46) TCGA-C5-A7UH-01 11 18429076 18429076 C T LDHA 3'UTR 0.53 TCGA-C5-A7UH-01 11 18467785 18467785 T C LDHC Missense_Mutation p.Y247H 0.56 deleterious(0.02) probably_damaging(0.947) TCGA-C5-A7UH-01 11 6412643 6412643 C T SMPD1 Silent p.S116S 0.73 TCGA-C5-A7UH-01 11 65383829 65383829 C T PCNXL3 Missense_Mutation p.S16L 0.51 deleterious(0) possibly_damaging(0.602) TCGA-C5-A7UH-01 11 66191431 66191431 C G NPAS4 Missense_Mutation p.S357C 0.39 deleterious(0) possibly_damaging(0.671) TCGA-C5-A7UH-01 11 66392285 66392285 C T RBM14 Missense_Mutation p.S313L 0.67 tolerated(0.22) benign(0) TCGA-C5-A7UH-01 11 66392783 66392783 C T RBM14 Missense_Mutation p.S479L 0.58 deleterious(0.02) unknown(0) TCGA-C5-A7UH-01 11 75153405 75153405 C T GDPD5 Intron 0.52 TCGA-C5-A7UH-01 11 85422265 85422265 C T SYTL2 Missense_Mutation p.R912K 0.72 deleterious(0.01) probably_damaging(0.946) TCGA-C5-A7UH-01 11 87020555 87020555 C G TMEM135 Missense_Mutation p.I259M 0.57 tolerated(0.13) possibly_damaging(0.525) TCGA-C5-A7UH-01 11 9335975 9335975 C G TMEM41B Missense_Mutation p.R5T 0.52 deleterious_low_confidence(0.05) benign(0.01) TCGA-C5-A7UH-01 12 105591668 105591668 G A APPL2 Silent p.L315L 0.26 TCGA-C5-A7UH-01 12 111890302 111890302 G A ATXN2 3'UTR 0.36 TCGA-C5-A7UH-01 12 117402550 117402550 C T FBXW8 Silent p.Y242Y 0.49 TCGA-C5-A7UH-01 12 118454660 118454660 G A RFC5 Missense_Mutation p.E10K 0.43 tolerated(0.2) benign(0.001) TCGA-C5-A7UH-01 12 118454686 118454686 G A RFC5 Silent p.R18R 0.42 TCGA-C5-A7UH-01 12 122968017 122968017 C T ZCCHC8 Missense_Mutation p.E199K 0.46 deleterious(0) probably_damaging(0.939) TCGA-C5-A7UH-01 12 4921269 4921269 C T KCNA6 3'UTR 0.39 TCGA-C5-A7UH-01 12 49951641 49951641 T C KCNH3 Silent p.L1053L 0.15 TCGA-C5-A7UH-01 12 51752955 51752955 G T GALNT6 Missense_Mutation p.F443L 0.33 deleterious(0) benign(0.437) TCGA-C5-A7UH-01 12 520915 520915 G A CCDC77 Missense_Mutation p.R14Q 0.17 tolerated_low_confidence(0.34) benign(0.001) TCGA-C5-A7UH-01 12 52501798 52501798 G A AC078864.1 3'Flank 0.47 TCGA-C5-A7UH-01 12 53454520 53454520 G A TENC1 Missense_Mutation p.E954K 0.44 tolerated(0.29) benign(0.005) TCGA-C5-A7UH-01 12 53807484 53807484 G A SP1 3'Flank 0.70 TCGA-C5-A7UH-01 12 56641847 56641847 G A ANKRD52 Silent p.I646I 0.43 TCGA-C5-A7UH-01 12 6705248 6705248 C T CHD4 Missense_Mutation p.D650N 0.50 deleterious(0.02) probably_damaging(0.948) TCGA-C5-A7UH-01 12 69252727 69252727 G C CPM Silent p.L355L 0.44 TCGA-C5-A7UH-01 12 75874744 75874744 C T GLIPR1 Silent p.I28I 0.19 TCGA-C5-A7UH-01 13 113803395 113803395 C A F10 Missense_Mutation p.P344H 0.30 deleterious(0) probably_damaging(1) TCGA-C5-A7UH-01 13 72440795 72440795 G A DACH1 Missense_Mutation p.S38L 0.69 unknown(0) TCGA-C5-A7UH-01 14 102391552 102391552 G A PPP2R5C Silent p.K537K 0.51 TCGA-C5-A7UH-01 14 102391583 102391583 G A PPP2R5C Missense_Mutation p.E548K 0.40 deleterious_low_confidence(0.01) benign(0.287) TCGA-C5-A7UH-01 14 102391940 102391940 G A PPP2R5C 3'UTR 0.40 TCGA-C5-A7UH-01 14 104152088 104152088 C T KLC1 Intron 0.43 TCGA-C5-A7UH-01 14 31597175 31597175 C A HECTD1 Missense_Mutation p.L1599F 0.38 tolerated(0.14) probably_damaging(0.969) TCGA-C5-A7UH-01 14 59951218 59951218 G A JKAMP 5'UTR 0.38 TCGA-C5-A7UH-01 14 64936472 64936472 C T AKAP5 3'UTR 0.26 TCGA-C5-A7UH-01 14 69263153 69263153 C G ZFP36L1 5'Flank 0.40 TCGA-C5-A7UH-01 14 74959988 74959988 G A NPC2 5'UTR 0.45 TCGA-C5-A7UH-01 14 79432549 79432549 G A NRXN3 Silent p.L486L 0.31 TCGA-C5-A7UH-01 14 94718190 94718190 C G PPP4R4 Missense_Mutation p.L608V 0.47 tolerated(1) benign(0.069) TCGA-C5-A7UH-01 15 33261392 33261392 G T FMN1 Missense_Mutation p.S614Y 0.41 tolerated(0.07) unknown(0) TCGA-C5-A7UH-01 15 35271839 35271839 G C AC114546.1 Missense_Mutation p.Q22H 0.42 unknown(0) TCGA-C5-A7UH-01 15 40656682 40656682 C G DISP2 Missense_Mutation p.I180M 0.31 deleterious(0.02) benign(0.037) TCGA-C5-A7UH-01 15 41347514 41347514 C A INO80 Nonsense_Mutation p.E707* 0.24 TCGA-C5-A7UH-01 15 41601953 41601953 C T OIP5 Silent p.%3D 0.46 TCGA-C5-A7UH-01 15 45430180 45430180 C T DUOX1 Missense_Mutation p.L361F 0.48 tolerated(0.06) benign(0.089) TCGA-C5-A7UH-01 15 50273469 50273469 C A ATP8B4 Missense_Mutation p.Q257H 0.43 deleterious(0) probably_damaging(0.999) TCGA-C5-A7UH-01 15 57837863 57837863 G A CGNL1 Missense_Mutation p.D1192N 0.22 deleterious(0) probably_damaging(0.998) TCGA-C5-A7UH-01 15 65477498 65477498 G A CLPX 5'UTR 0.39 TCGA-C5-A7UH-01 15 67485816 67485816 C T SMAD3 3'UTR 0.25 TCGA-C5-A7UH-01 15 68582995 68582995 C T FEM1B Silent p.V433V 0.45 TCGA-C5-A7UH-01 15 76248315 76248315 C G NRG4 Missense_Mutation p.D97H 0.35 tolerated(0.13) probably_damaging(0.922) TCGA-C5-A7UH-01 15 78316761 78316761 C T TBC1D2B Missense_Mutation p.D403N 0.39 tolerated(0.06) benign(0.001) TCGA-C5-A7UH-01 15 83735727 83735727 G A BTBD1 Silent p.F59F 0.20 TCGA-C5-A7UH-01 15 86286834 86286834 G A AKAP13 Missense_Mutation p.E2728K 0.22 deleterious(0.01) possibly_damaging(0.456) TCGA-C5-A7UH-01 15 86287916 86287916 C T AKAP13 3'UTR 0.56 TCGA-C5-A7UH-01 15 86287987 86287987 C G AKAP13 3'UTR 0.53 TCGA-C5-A7UH-01 15 98417324 98417324 G A LINC00923 Silent p.L64L 0.33 TCGA-C5-A7UH-01 16 1400917 1400917 C A TSR3 Silent p.G139G 0.35 TCGA-C5-A7UH-01 16 18846284 18846284 G T SMG1 Missense_Mutation p.H2754N 0.53 tolerated(0.22) benign(0.049) TCGA-C5-A7UH-01 16 29001332 29001333 GA - LAT Frame_Shift_Del 0.29 TCGA-C5-A7UH-01 16 30365041 30365041 C T CD2BP2 Missense_Mutation p.M152I 0.31 tolerated(0.14) benign(0.005) TCGA-C5-A7UH-01 16 30388990 30388990 G A MYLPF Silent p.L124L 0.38 TCGA-C5-A7UH-01 16 32264789 32264789 G C TP53TG3D Missense_Mutation p.D39H 0.25 deleterious_low_confidence(0.02) probably_damaging(0.934) TCGA-C5-A7UH-01 16 50344639 50344639 G A ADCY7 Silent p.S734S 0.50 TCGA-C5-A7UH-01 16 67134158 67134158 C G CBFB 3'UTR 0.38 TCGA-C5-A7UH-01 16 7657297 7657297 G C RBFOX1 Missense_Mutation p.L231F 0.33 deleterious(0.02) possibly_damaging(0.713) TCGA-C5-A7UH-01 16 89661792 89661792 G A CPNE7 Silent p.L515L 0.33 TCGA-C5-A7UH-01 16 89940073 89940073 C G TCF25 5'UTR 0.12 TCGA-C5-A7UH-01 16 89961512 89961512 C T TCF25 Nonsense_Mutation p.Q299* 0.28 TCGA-C5-A7UH-01 17 10219250 10219250 C G MYH13 Silent p.L1277L 0.25 TCGA-C5-A7UH-01 17 19091383 19091383 G A SNORD3A RNA 0.14 TCGA-C5-A7UH-01 17 34257647 34257647 C T RDM1 Missense_Mutation p.E29K 0.22 tolerated(0.09) possibly_damaging(0.746) TCGA-C5-A7UH-01 17 40271595 40271595 G A KAT2A Nonsense_Mutation p.Q281* 0.26 TCGA-C5-A7UH-01 17 40948847 40948847 G T WNK4 3'UTR 0.67 TCGA-C5-A7UH-01 17 40948853 40948853 G A WNK4 3'UTR 0.69 TCGA-C5-A7UH-01 17 43198400 43198400 G A PLCD3 Silent p.I141I 0.22 TCGA-C5-A7UH-01 17 45662986 45662986 G A NPEPPS Missense_Mutation p.E257K 0.25 deleterious(0.03) possibly_damaging(0.901) TCGA-C5-A7UH-01 17 45663580 45663580 G C NPEPPS Missense_Mutation p.D306H 0.27 deleterious(0) probably_damaging(1) TCGA-C5-A7UH-01 17 47302015 47302015 G A PHOSPHO1 Silent p.L158L 0.27 TCGA-C5-A7UH-01 17 4789452 4789452 C A MINK1 Silent p.L244L 0.21 TCGA-C5-A7UH-01 17 5085838 5085838 G A ZNF594 Nonsense_Mutation p.Q572* 0.45 TCGA-C5-A7UH-01 17 62892990 62892990 G A LRRC37A3 Missense_Mutation p.S129L 0.22 tolerated(0.34) benign(0.001) TCGA-C5-A7UH-01 17 6909857 6909857 G T ALOX12 Missense_Mutation p.G491W 0.49 deleterious(0.01) possibly_damaging(0.838) TCGA-C5-A7UH-01 17 7257817 7257817 G T KCTD11 3'UTR 0.42 TCGA-C5-A7UH-01 17 7360095 7360095 G A CHRNB1 3'UTR 0.36 TCGA-C5-A7UH-01 17 74719994 74719994 C T JMJD6 Missense_Mutation p.R222Q 0.47 tolerated(0.33) benign(0.12) TCGA-C5-A7UH-01 17 7554704 7554704 C G ATP1B2 5'UTR 0.40 TCGA-C5-A7UH-01 17 76354823 76354830 GTCGAAGC - SOCS3 Frame_Shift_Del p.R116Lfs*24 0.45 TCGA-C5-A7UH-01 17 78970822 78970822 G C CHMP6 Missense_Mutation p.E122Q 0.37 deleterious(0.03) benign(0.405) TCGA-C5-A7UH-01 17 79082380 79082380 C A BAIAP2 Intron 0.33 TCGA-C5-A7UH-01 17 79225149 79225149 G A SLC38A10 Intron 0.52 TCGA-C5-A7UH-01 18 46808458 46808458 G A DYM Missense_Mutation p.S345F 0.34 tolerated(0.41) benign(0.015) TCGA-C5-A7UH-01 19 11106898 11106898 G A SMARCA4 Missense_Mutation p.E535K 0.42 probably_damaging(0.984) TCGA-C5-A7UH-01 19 11107185 11107185 G A SMARCA4 Missense_Mutation p.E593K 0.29 possibly_damaging(0.463) TCGA-C5-A7UH-01 19 11352590 11352590 C T C19orf80 3'UTR 0.22 TCGA-C5-A7UH-01 19 12127285 12127285 C G ZNF433 Missense_Mutation p.E133Q 0.32 deleterious(0.04) possibly_damaging(0.461) TCGA-C5-A7UH-01 19 1271012 1271012 C T CIRBP Missense_Mutation p.S27L 0.63 deleterious(0.01) probably_damaging(0.969) TCGA-C5-A7UH-01 19 14200167 14200167 C T SAMD1 Missense_Mutation p.G215E 0.36 tolerated(0.38) unknown(0) TCGA-C5-A7UH-01 19 16687305 16687305 C G MED26 Missense_Mutation p.D446H 0.17 deleterious(0.02) possibly_damaging(0.607) TCGA-C5-A7UH-01 19 18561762 18561762 G T ELL Missense_Mutation p.F330L 0.33 deleterious(0.05) benign(0.291) TCGA-C5-A7UH-01 19 3005538 3005538 G A TLE2 Missense_Mutation p.S598F 0.37 deleterious(0) probably_damaging(0.984) TCGA-C5-A7UH-01 19 3119049 3119049 G A GNA11 Missense_Mutation p.E245K 0.31 tolerated(0.24) benign(0.064) TCGA-C5-A7UH-01 19 3193402 3193402 C T NCLN Nonsense_Mutation p.Q166* 0.31 TCGA-C5-A7UH-01 19 35850071 35850071 C T FFAR3 Silent p.F93F 0.26 TCGA-C5-A7UH-01 19 36223347 36223347 C T KMT2B Missense_Mutation p.S1966F 0.28 possibly_damaging(0.737) TCGA-C5-A7UH-01 19 36508864 36508864 G C CLIP3 Missense_Mutation p.L405V 0.31 tolerated(0.9) benign(0) TCGA-C5-A7UH-01 19 37310810 37310810 C T ZNF790 Missense_Mutation p.E146K 0.46 tolerated(0.15) benign(0.001) TCGA-C5-A7UH-01 19 39799112 39799112 C T LRFN1 Missense_Mutation p.V493M 0.50 deleterious(0) probably_damaging(1) TCGA-C5-A7UH-01 19 40376976 40376976 C T FCGBP Missense_Mutation p.E3816K 0.21 benign(0.292) TCGA-C5-A7UH-01 19 40392661 40392661 C T FCGBP Missense_Mutation p.E2615K 0.26 benign(0) TCGA-C5-A7UH-01 19 41352833 41352833 C T CYP2A6 Missense_Mutation p.D260N 0.35 probably_damaging(0.999) TCGA-C5-A7UH-01 19 43688967 43688967 C T PSG5 Missense_Mutation p.G133R 0.09 tolerated(0.44) benign(0.158) TCGA-C5-A7UH-01 19 44537136 44537136 C T ZNF222 Missense_Mutation p.R477C 0.10 tolerated(0.1) possibly_damaging(0.886) TCGA-C5-A7UH-01 19 4525653 4525653 G A PLIN5 Silent p.L238L 0.28 TCGA-C5-A7UH-01 19 46375532 46375532 C T FOXA3 Missense_Mutation p.S90F 0.23 tolerated(0.3) unknown(0) TCGA-C5-A7UH-01 19 46627226 46627226 G A IGFL3 Silent p.P89P 0.43 TCGA-C5-A7UH-01 19 51650008 51650008 C T SIGLEC7 Intron 0.40 TCGA-C5-A7UH-01 19 5231417 5231417 C G PTPRS Missense_Mutation p.E687Q 0.39 tolerated(0.23) possibly_damaging(0.771) TCGA-C5-A7UH-01 19 57641166 57641166 G T USP29 Nonsense_Mutation p.E375* 0.35 TCGA-C5-A7UH-01 19 57641463 57641463 G C USP29 Missense_Mutation p.D474H 0.32 deleterious(0) probably_damaging(0.995) TCGA-C5-A7UH-01 19 59082675 59082675 C G MZF1 Missense_Mutation p.E28Q 0.42 tolerated(0.1) benign(0.005) TCGA-C5-A7UH-01 19 8993541 8993541 C G MUC16 Missense_Mutation p.E13850Q 0.46 probably_damaging(0.998) TCGA-C5-A7UH-01 1 109365884 109365884 G A AKNAD1 Intron 0.38 TCGA-C5-A7UH-01 1 109792835 109792835 G A CELSR2 Missense_Mutation p.R45Q 0.33 tolerated_low_confidence(0.08) benign(0.015) TCGA-C5-A7UH-01 1 117086981 117086981 C A CD58 Nonsense_Mutation p.E106* 0.31 TCGA-C5-A7UH-01 1 152324999 152324999 G C FLG2 Missense_Mutation p.Q1755E 0.19 benign(0.042) TCGA-C5-A7UH-01 1 152325017 152325017 G A FLG2 Missense_Mutation p.H1749Y 0.17 benign(0.152) TCGA-C5-A7UH-01 1 155291885 155291885 C G RUSC1 Missense_Mutation p.S107R 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-C5-A7UH-01 1 155291887 155291887 C T RUSC1 Missense_Mutation p.S108F 0.43 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-C5-A7UH-01 1 158908876 158908876 A C PYHIN1 Missense_Mutation p.K140Q 0.34 deleterious(0.01) benign(0.047) TCGA-C5-A7UH-01 1 173455459 173455459 G A PRDX6 Silent p.R155R 0.53 TCGA-C5-A7UH-01 1 17394881 17394881 G A PADI2 3'UTR 0.62 TCGA-C5-A7UH-01 1 183090971 183090971 G C LAMC1 Missense_Mutation p.E702Q 0.47 tolerated(0.22) benign(0.165) TCGA-C5-A7UH-01 1 190067983 190067983 T C BRINP3 Missense_Mutation p.E489G 0.36 deleterious(0) benign(0.411) TCGA-C5-A7UH-01 1 208062063 208062063 C T CD34 Missense_Mutation p.M312I 0.37 deleterious(0) probably_damaging(0.954) TCGA-C5-A7UH-01 1 216138803 216138803 C G USH2A Missense_Mutation p.E2326Q 0.35 possibly_damaging(0.882) TCGA-C5-A7UH-01 1 220205772 220205772 G A EPRS Missense_Mutation p.S162L 0.24 tolerated(0.05) benign(0.003) TCGA-C5-A7UH-01 1 229611387 229611387 G C NUP133 Missense_Mutation p.Q617E 0.39 tolerated(0.17) possibly_damaging(0.848) TCGA-C5-A7UH-01 1 231376871 231376871 G A C1orf131 Missense_Mutation p.S6L 0.33 tolerated_low_confidence(0.37) benign(0.042) TCGA-C5-A7UH-01 1 241904939 241904939 C T WDR64 Silent p.L471L 0.26 TCGA-C5-A7UH-01 1 25894165 25894165 C T LDLRAP1 3'UTR 0.20 TCGA-C5-A7UH-01 1 25894702 25894702 C T LDLRAP1 3'UTR 0.28 TCGA-C5-A7UH-01 1 26368273 26368273 G A SLC30A2 Silent p.P252P 0.32 TCGA-C5-A7UH-01 1 35227896 35227896 T A GJB4 3'UTR 0.36 TCGA-C5-A7UH-01 1 45471529 45471529 C T HECTD3 Nonsense_Mutation p.W624* 0.45 TCGA-C5-A7UH-01 1 52821305 52821305 C T CC2D1B Missense_Mutation p.R727Q 0.41 deleterious(0) probably_damaging(0.953) TCGA-C5-A7UH-01 1 53459202 53459202 G A SCP2 Intron 0.40 TCGA-C5-A7UH-01 20 30781666 30781666 G A PLAGL2 3'UTR 0.55 TCGA-C5-A7UH-01 20 34241792 34241792 T G RBM12 Missense_Mutation p.K485Q 0.58 tolerated(0.22) probably_damaging(0.998) TCGA-C5-A7UH-01 20 42875931 42875931 C T GDAP1L1 5'UTR 0.26 TCGA-C5-A7UH-01 20 44002626 44002626 C G TP53TG5 Missense_Mutation p.R265T 0.47 deleterious_low_confidence(0.04) possibly_damaging(0.708) TCGA-C5-A7UH-01 20 44506247 44506247 C G ZSWIM3 Silent p.L350L 0.43 TCGA-C5-A7UH-01 20 44507087 44507087 C G ZSWIM3 Silent p.L630L 0.63 TCGA-C5-A7UH-01 20 62198794 62198794 C T HELZ2 Silent p.A639A 0.69 TCGA-C5-A7UH-01 21 38117064 38117064 C T SIM2 Silent p.C401C 0.36 TCGA-C5-A7UH-01 21 44949593 44949593 G A HSF2BP 3'UTR 0.71 TCGA-C5-A7UH-01 22 18898505 18898505 G A DGCR6 Silent p.A159A 0.30 TCGA-C5-A7UH-01 22 21346583 21346583 C G LZTR1 Missense_Mutation p.F358L 0.29 tolerated_low_confidence(1) benign(0) TCGA-C5-A7UH-01 22 35719506 35719506 C T TOM1 Silent p.F128F 0.43 TCGA-C5-A7UH-01 22 35719843 35719843 C T TOM1 Missense_Mutation p.A195V 0.45 tolerated(0.12) benign(0.06) TCGA-C5-A7UH-01 22 35719851 35719851 C T TOM1 Silent p.L198L 0.43 TCGA-C5-A7UH-01 22 41558756 41558756 G - EP300 Frame_Shift_Del p.R1234Kfs*43 0.35 TCGA-C5-A7UH-01 22 41572405 41572405 G A EP300 Missense_Mutation p.R1645Q 0.25 probably_damaging(0.997) TCGA-C5-A7UH-01 22 43950956 43950956 C G EFCAB6 Missense_Mutation p.E1147D 0.35 deleterious(0.01) possibly_damaging(0.818) TCGA-C5-A7UH-01 22 50278464 50278464 C T ZBED4 Missense_Mutation p.S385L 0.32 tolerated(0.72) benign(0.004) TCGA-C5-A7UH-01 2 101624194 101624194 G A TBC1D8 3'UTR 0.31 TCGA-C5-A7UH-01 2 122042746 122042746 G A TFCP2L1 5'UTR 0.35 TCGA-C5-A7UH-01 2 133174897 133174897 C T GPR39 Silent p.I94I 0.21 TCGA-C5-A7UH-01 2 135745585 135745585 G A MAP3K19 Missense_Mutation p.S286L 0.32 deleterious(0) possibly_damaging(0.798) TCGA-C5-A7UH-01 2 168727100 168727100 G C B3GALT1 3'UTR 0.48 TCGA-C5-A7UH-01 2 179451935 179451935 C G TTN Missense_Mutation p.E21335Q 0.37 TCGA-C5-A7UH-01 2 179460339 179460339 G A TTN Missense_Mutation p.L19248F 0.43 TCGA-C5-A7UH-01 2 182374496 182374496 C G ITGA4 Missense_Mutation p.L603V 0.46 deleterious(0) probably_damaging(0.999) TCGA-C5-A7UH-01 2 189904002 189904002 C T COL5A2 Silent p.Q1307Q 0.37 TCGA-C5-A7UH-01 2 206166584 206166584 G C PARD3B Intron 0.47 TCGA-C5-A7UH-01 2 234113029 234113029 T C INPP5D Missense_Mutation p.V1066A 0.50 tolerated_low_confidence(0.43) benign(0) TCGA-C5-A7UH-01 2 61647956 61647956 T C USP34 Missense_Mutation p.E19G 0.14 tolerated(0.1) benign(0.055) TCGA-C5-A7UH-01 2 86066982 86066982 C T ST3GAL5 3'UTR 0.48 TCGA-C5-A7UH-01 2 8931324 8931325 - CA KIDINS220 Frame_Shift_Ins p.D436Vfs*45 0.26 TCGA-C5-A7UH-01 2 97350061 97350061 C T FER1L5 Intron 0.33 TCGA-C5-A7UH-01 2 97350071 97350071 C A FER1L5 RNA 0.37 TCGA-C5-A7UH-01 3 11302022 11302022 C G HRH1 Missense_Mutation p.I433M 0.92 deleterious(0) probably_damaging(0.938) TCGA-C5-A7UH-01 3 115394886 115394886 G C GAP43 Missense_Mutation p.K55N 0.30 deleterious(0) probably_damaging(0.988) TCGA-C5-A7UH-01 3 123667908 123667908 C T CCDC14 Missense_Mutation p.E149K 0.16 tolerated(0.29) benign(0.016) TCGA-C5-A7UH-01 3 126193878 126193878 G A ZXDC Silent p.F277F 0.25 TCGA-C5-A7UH-01 3 150804706 150804706 G T MED12L 5'UTR 0.54 TCGA-C5-A7UH-01 3 178916890 178916890 C T PIK3CA Missense_Mutation p.R93W 0.52 deleterious(0) probably_damaging(0.997) TCGA-C5-A7UH-01 3 179527435 179527435 G T PEX5L Missense_Mutation p.N392K 0.86 deleterious(0.05) probably_damaging(0.911) TCGA-C5-A7UH-01 3 183755875 183755875 C G HTR3D Missense_Mutation p.L243V 0.33 deleterious(0) probably_damaging(0.996) TCGA-C5-A7UH-01 3 184294866 184294866 G A EPHB3 Missense_Mutation p.A417T 0.29 tolerated(0.08) probably_damaging(0.938) TCGA-C5-A7UH-01 3 195509059 195509059 G C MUC4 Missense_Mutation p.T3131R 0.12 probably_damaging(0.997) TCGA-C5-A7UH-01 3 37408158 37408158 C G GOLGA4 3'UTR 0.56 TCGA-C5-A7UH-01 4 100761527 100761527 G C DAPP1 Missense_Mutation p.L102F 0.38 tolerated(0.07) possibly_damaging(0.796) TCGA-C5-A7UH-01 4 107173034 107173034 C G TBCK Missense_Mutation p.E196Q 0.23 deleterious(0.03) probably_damaging(0.99) TCGA-C5-A7UH-01 4 119952442 119952442 C T SYNPO2 Nonsense_Mutation p.Q838* 0.23 TCGA-C5-A7UH-01 4 155264710 155264710 G A DCHS2 Missense_Mutation p.H297Y 0.33 tolerated(1) benign(0.002) TCGA-C5-A7UH-01 4 26719616 26719616 C T TBC1D19 Missense_Mutation p.S339L 0.37 deleterious(0.01) benign(0.073) TCGA-C5-A7UH-01 4 76721919 76721919 C T USO1 Missense_Mutation p.H620Y 0.50 tolerated(0.68) benign(0.111) TCGA-C5-A7UH-01 5 114949442 114949442 C T TMED7 3'UTR 0.18 TCGA-C5-A7UH-01 5 135416214 135416214 C T VTRNA2-1 RNA 0.70 TCGA-C5-A7UH-01 5 137089493 137089493 G A HNRNPA0 Missense_Mutation p.S88L 0.78 deleterious(0.01) possibly_damaging(0.716) TCGA-C5-A7UH-01 5 139060271 139060271 C - CXXC5 Frame_Shift_Del p.E57Sfs*40 0.10 TCGA-C5-A7UH-01 5 140783709 140783709 C T PCDHGA9 Missense_Mutation p.S397L 0.23 tolerated_low_confidence(0.12) benign(0.287) TCGA-C5-A7UH-01 5 140783879 140783879 C G PCDHGA9 Missense_Mutation p.Q454E 0.21 tolerated_low_confidence(0.05) benign(0.029) TCGA-C5-A7UH-01 5 145439458 145439458 G A SH3RF2 Missense_Mutation p.G529R 0.34 tolerated(0.07) benign(0.081) TCGA-C5-A7UH-01 5 147889404 147889404 G A HTR4 Missense_Mutation p.R231W 0.78 deleterious(0) probably_damaging(0.996) TCGA-C5-A7UH-01 5 149599631 149599631 C T CAMK2A 3'Flank 0.78 TCGA-C5-A7UH-01 5 176636850 176636850 G C NSD1 Missense_Mutation p.E484Q 0.84 deleterious_low_confidence(0.04) possibly_damaging(0.724) TCGA-C5-A7UH-01 5 176636899 176636899 G C NSD1 Missense_Mutation p.R500T 0.82 deleterious_low_confidence(0) possibly_damaging(0.784) TCGA-C5-A7UH-01 5 176637357 176637357 G A NSD1 Missense_Mutation p.E653K 0.62 tolerated_low_confidence(0.13) benign(0.046) TCGA-C5-A7UH-01 5 176638806 176638806 G A NSD1 Missense_Mutation p.E1136K 0.85 deleterious_low_confidence(0.01) benign(0.034) TCGA-C5-A7UH-01 5 176638817 176638817 T A NSD1 Silent p.S1139S 0.85 TCGA-C5-A7UH-01 5 176638839 176638839 G A NSD1 Missense_Mutation p.E1147K 0.84 deleterious_low_confidence(0) benign(0.352) TCGA-C5-A7UH-01 5 33588817 33588817 C T ADAMTS12 Missense_Mutation p.E918K 0.16 deleterious(0.03) probably_damaging(0.924) TCGA-C5-A7UH-01 5 37226650 37226650 C G C5orf42 Missense_Mutation p.E683Q 0.21 tolerated(0.27) benign(0.133) TCGA-C5-A7UH-01 5 42769698 42769698 G A CCDC152 Splice_Site p.X65_splice 0.25 TCGA-C5-A7UH-01 5 89924399 89924399 T G GPR98 Missense_Mutation p.V420G 0.13 possibly_damaging(0.713) TCGA-C5-A7UH-01 5 93217310 93217310 C G FAM172A Missense_Mutation p.D218H 0.64 deleterious(0.03) probably_damaging(0.924) TCGA-C5-A7UH-01 6 137519721 137519721 G T IFNGR1 Nonsense_Mutation p.S306* 0.71 TCGA-C5-A7UH-01 6 170143221 170143221 G A TCTE3 Silent p.F147F 0.64 TCGA-C5-A7UH-01 6 20109874 20109874 G A MBOAT1 Missense_Mutation p.A439V 0.40 tolerated(0.4) benign(0.173) TCGA-C5-A7UH-01 6 22287684 22287684 C T PRL Missense_Mutation p.D211N 0.42 tolerated(0.05) probably_damaging(0.999) TCGA-C5-A7UH-01 6 25261441 25261441 C - RP3-522P13.3 RNA 0.26 TCGA-C5-A7UH-01 6 26158492 26158492 G T HIST1H2BD Missense_Mutation p.R32L 0.36 deleterious_low_confidence(0.04) benign(0.155) TCGA-C5-A7UH-01 6 30303588 30303588 G A TRIM39 Missense_Mutation p.E206K 0.58 deleterious(0.05) possibly_damaging(0.665) TCGA-C5-A7UH-01 6 30691295 30691295 C T TUBB Silent p.I152I 0.29 TCGA-C5-A7UH-01 6 30867038 30867038 C T DDR1 Missense_Mutation p.R909W 0.15 tolerated(0.19) possibly_damaging(0.797) TCGA-C5-A7UH-01 6 30918216 30918216 G A DPCR1 Missense_Mutation p.E659K 0.56 tolerated(1) benign(0.002) TCGA-C5-A7UH-01 6 31118560 31118560 G A CCHCR1 Missense_Mutation p.S348F 0.33 deleterious(0.01) benign(0.149) TCGA-C5-A7UH-01 6 31239773 31239773 C G HLA-C Intron 0.31 TCGA-C5-A7UH-01 6 31783743 31783743 G A HSPA1A Silent p.A70A 0.43 TCGA-C5-A7UH-01 6 32083736 32083736 G C ATF6B Nonsense_Mutation p.S631* 0.44 TCGA-C5-A7UH-01 6 32731264 32731264 G A HLA-DQB2 5'UTR 0.13 TCGA-C5-A7UH-01 6 34951182 34951182 C G ANKS1A Missense_Mutation p.S331C 0.48 deleterious(0) possibly_damaging(0.469) TCGA-C5-A7UH-01 6 34952856 34952856 C T ANKS1A Intron 0.43 TCGA-C5-A7UH-01 6 35437953 35437953 C T RPL10A Intron 0.41 TCGA-C5-A7UH-01 6 3738335 3738335 C T PXDC1 Missense_Mutation p.E102K 0.27 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-C5-A7UH-01 6 41002847 41002847 C T UNC5CL 5'UTR 0.56 TCGA-C5-A7UH-01 6 41066519 41066519 G A NFYA 3'UTR 0.32 TCGA-C5-A7UH-01 6 41066523 41066523 G A NFYA 3'UTR 0.29 TCGA-C5-A7UH-01 6 41066640 41066640 G A NFYA 3'UTR 0.31 TCGA-C5-A7UH-01 6 41162210 41162210 G A TREML2 Silent p.L246L 0.45 TCGA-C5-A7UH-01 6 52288785 52288785 C A EFHC1 Missense_Mutation p.N35K 0.32 deleterious(0) benign(0.376) TCGA-C5-A7UH-01 6 53010373 53010373 C T GCM1 Missense_Mutation p.D20N 0.42 deleterious(0) probably_damaging(0.995) TCGA-C5-A7UH-01 6 69666033 69666033 G A BAI3 Missense_Mutation p.R438K 0.13 tolerated(0.56) benign(0.009) TCGA-C5-A7UH-01 6 69666534 69666534 C A BAI3 Intron 0.33 TCGA-C5-A7UH-01 6 78173057 78173057 G C HTR1B Missense_Mutation p.Q22E 0.41 tolerated_low_confidence(0.57) benign(0) TCGA-C5-A7UH-01 6 85457706 85457706 C A TBX18 Nonsense_Mutation p.E291* 0.58 TCGA-C5-A7UH-01 7 104773330 104773330 C A SRPK2 Nonsense_Mutation p.E554* 0.60 TCGA-C5-A7UH-01 7 127228576 127228576 C G ARF5 Silent p.L8L 0.38 TCGA-C5-A7UH-01 7 138270692 138270692 G A TRIM24 3'UTR 0.35 TCGA-C5-A7UH-01 7 148922896 148922896 C G ZNF282 3'UTR 0.42 TCGA-C5-A7UH-01 7 148923180 148923180 C T ZNF282 3'UTR 0.26 TCGA-C5-A7UH-01 7 150768846 150768846 C T SLC4A2 Silent p.F754F 0.39 TCGA-C5-A7UH-01 7 150771157 150771157 C T SLC4A2 Missense_Mutation p.S856L 0.43 tolerated(0.31) benign(0.001) TCGA-C5-A7UH-01 7 150771163 150771163 C A SLC4A2 Missense_Mutation p.S858Y 0.44 tolerated(0.55) possibly_damaging(0.447) TCGA-C5-A7UH-01 7 151874923 151874923 G A KMT2C Nonsense_Mutation p.Q2539* 0.81 TCGA-C5-A7UH-01 7 27168440 27168440 G A HOXA4 3'UTR 0.58 TCGA-C5-A7UH-01 7 6864357 6864357 C T CCZ1B Silent p.K44K 0.23 TCGA-C5-A7UH-01 7 70885922 70885922 G A WBSCR17 Missense_Mutation p.E265K 0.25 deleterious(0) benign(0.301) TCGA-C5-A7UH-01 7 72884732 72884732 G A BAZ1B Missense_Mutation p.A892V 0.31 deleterious(0.04) possibly_damaging(0.577) TCGA-C5-A7UH-01 7 73457475 73457475 G A ELN Missense_Mutation p.G135E 0.40 unknown(0) TCGA-C5-A7UH-01 7 81579463 81579463 C T CACNA2D1 3'UTR 0.26 TCGA-C5-A7UH-01 7 95705393 95705393 G A DYNC1I1 Missense_Mutation p.E529K 0.30 deleterious(0.01) benign(0.437) TCGA-C5-A7UH-01 8 103266152 103266152 G A UBR5 3'UTR 0.37 TCGA-C5-A7UH-01 8 110986320 110986320 C T KCNV1 Missense_Mutation p.E100K 0.66 deleterious(0) probably_damaging(0.995) TCGA-C5-A7UH-01 8 135614806 135614806 C T ZFAT Missense_Mutation p.E386K 0.31 deleterious(0.03) possibly_damaging(0.63) TCGA-C5-A7UH-01 8 145138198 145138198 G T GPAA1 Missense_Mutation p.K82N 0.16 tolerated(0.14) benign(0.004) TCGA-C5-A7UH-01 8 145138904 145138904 G A GPAA1 Missense_Mutation p.E193K 0.11 deleterious(0.02) benign(0.089) TCGA-C5-A7UH-01 8 145555410 145555410 G A SCRT1 3'UTR 0.35 TCGA-C5-A7UH-01 8 21608368 21608368 T C GFRA2 Missense_Mutation p.K176E 0.45 deleterious(0.01) benign(0.264) TCGA-C5-A7UH-01 8 22447189 22447189 G A PDLIM2 Missense_Mutation p.R483Q 0.44 tolerated(0.07) benign(0.119) TCGA-C5-A7UH-01 8 85762241 85762241 A G RALYL Missense_Mutation p.Y144C 0.60 tolerated(0.09) probably_damaging(0.96) TCGA-C5-A7UH-01 8 86573415 86573415 G A REXO1L1P 3'UTR 0.07 TCGA-C5-A7UH-01 8 98943460 98943460 A G MATN2 Missense_Mutation p.Q141R 0.55 tolerated(0.21) possibly_damaging(0.888) TCGA-C5-A7UH-01 9 104187132 104187132 C T ALDOB Missense_Mutation p.R331Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-C5-A7UH-01 9 117052563 117052563 C T COL27A1 Silent p.I1440I 0.31 TCGA-C5-A7UH-01 9 123169326 123169326 A G CDK5RAP2 Missense_Mutation p.S1643P 0.44 tolerated(0.25) benign(0.094) TCGA-C5-A7UH-01 9 125673645 125673645 G A ZBTB6 Missense_Mutation p.S236L 0.27 tolerated(0.58) benign(0.013) TCGA-C5-A7UH-01 9 128206818 128206818 C T MAPKAP1 Missense_Mutation p.E469K 0.31 deleterious(0) probably_damaging(0.96) TCGA-C5-A7UH-01 9 129728136 129728136 C T RALGPS1 Missense_Mutation p.S24L 0.26 tolerated(0.06) benign(0.368) TCGA-C5-A7UH-01 9 132597032 132597032 C T C9orf78 Missense_Mutation p.E33K 0.16 deleterious(0.01) probably_damaging(0.939) TCGA-C5-A7UH-01 9 132597483 132597483 C A C9orf78 Missense_Mutation p.K6N 0.18 deleterious(0.03) benign(0.425) TCGA-C5-A7UH-01 9 133269206 133269206 G A AL354898.1 5'Flank 0.21 TCGA-C5-A7UH-01 9 134322565 134322565 A T PRRC2B Nonsense_Mutation p.R317* 0.48 TCGA-C5-A7UH-01 9 135766953 135766953 G C TSC1 3'UTR 0.39 TCGA-C5-A7UH-01 9 139723892 139723892 G A RABL6 Silent p.K138K 0.17 TCGA-C5-A7UH-01 9 14084839 14084839 C T NFIB 3'Flank 0.32 TCGA-C5-A7UH-01 9 33463870 33463870 C T NOL6 Missense_Mutation p.E985K 0.14 deleterious(0.05) possibly_damaging(0.513) TCGA-C5-A7UH-01 9 35546762 35546762 G A RUSC2 Missense_Mutation p.D82N 0.29 tolerated(0.08) benign(0.196) TCGA-C5-A7UH-01 9 35707745 35707745 G C TLN1 Missense_Mutation p.L1539V 0.15 deleterious(0.04) possibly_damaging(0.878) TCGA-C5-A7UH-01 9 72727910 72727910 G A MAMDC2 Splice_Site p.X169_splice 0.32 TCGA-C5-A7UH-01 9 74828903 74828903 G A GDA Missense_Mutation p.E192K 0.18 tolerated(0.61) benign(0.003) TCGA-C5-A7UH-01 9 74969854 74969854 C A ZFAND5 3'UTR 0.35 TCGA-C5-A7UH-01 9 79980379 79980379 G A VPS13A Missense_Mutation p.E2739K 0.45 tolerated(0.54) benign(0.2) TCGA-C5-A7UH-01 9 88969247 88969247 G A ZCCHC6 5'UTR 0.51 TCGA-C5-A7UH-01 9 91610633 91610633 A G C9orf47 3'UTR 0.35 TCGA-C5-A7UH-01 9 94538029 94538029 G A ROR2 Silent p.L57L 0.52 TCGA-C5-A7UH-01 X 102192462 102192462 G C RAB40AL Silent p.G72G 0.25 TCGA-C5-A7UH-01 X 118588170 118588170 C G SLC25A43 3'UTR 0.26 TCGA-C5-A7UH-01 X 127186281 127186281 C T ACTRT1 5'UTR 0.33 TCGA-C5-A7UH-01 X 138678828 138678828 G C MCF2 Missense_Mutation p.F795L 0.18 deleterious(0) probably_damaging(0.978) TCGA-C5-A7UH-01 X 35993317 35993317 C G CXorf22 Missense_Mutation p.L770V 0.19 tolerated(0.27) benign(0.015) TCGA-C5-A7UH-01 X 39910985 39910985 C G BCOR 3'UTR 0.17 TCGA-C5-A7UH-01 X 47270144 47270144 G C ZNF157 Missense_Mutation p.E89Q 0.40 tolerated(0.08) probably_damaging(0.986) TCGA-C5-A7UH-01 X 48934405 48934405 C T WDR45 Silent p.L81L 0.20 TCGA-C5-A7UH-01 X 63412416 63412416 C T AMER1 Missense_Mutation p.E251K 0.36 tolerated(0.72) benign(0.026) TCGA-C5-A7UH-01 X 75649186 75649186 G A MAGEE1 Missense_Mutation p.R288H 0.26 deleterious_low_confidence(0.03) benign(0.001) TCGA-C5-A7UH-01 X 77150969 77150969 G A MAGT1 Missense_Mutation p.S12L 0.44 deleterious_low_confidence(0) benign(0.015) TCGA-C5-A7UH-01 X 99551216 99551216 G A PCDH19 3'UTR 0.35 TCGA-C5-A7UI-01 10 127516133 127516133 C G BCCIP Missense_Mutation p.L83V 0.56 tolerated(0.06) possibly_damaging(0.537) TCGA-C5-A7UI-01 10 70045148 70045148 G A PBLD Silent p.L237L 0.30 TCGA-C5-A7UI-01 10 96827072 96827072 C T CYP2C8 Missense_Mutation p.R125H 0.57 deleterious(0.04) benign(0.229) TCGA-C5-A7UI-01 11 10052696 10052696 C A SBF2 Nonsense_Mutation p.E101* 0.46 TCGA-C5-A7UI-01 11 118211259 118211259 C T CD3D Silent p.V35V 0.07 TCGA-C5-A7UI-01 11 124120897 124120897 C T OR8G1 Missense_Mutation p.H159Y 0.26 deleterious_low_confidence(0.02) benign(0.132) TCGA-C5-A7UI-01 11 14989297 14989297 G A CALCA 3'Flank 0.10 TCGA-C5-A7UI-01 11 17794170 17794170 C T KCNC1 Intron 0.31 TCGA-C5-A7UI-01 11 18387901 18387901 T G GTF2H1 3'UTR 0.52 TCGA-C5-A7UI-01 11 57427204 57427204 A G CLP1 Missense_Mutation p.K86E 0.33 tolerated(0.25) benign(0.001) TCGA-C5-A7UI-01 11 62294904 62294904 C G AHNAK Missense_Mutation p.D2329H 0.23 probably_damaging(0.972) TCGA-C5-A7UI-01 12 104476336 104476336 C A HCFC2 Missense_Mutation p.H276N 0.08 tolerated(0.13) benign(0.002) TCGA-C5-A7UI-01 12 113754436 113754436 G A SLC8B1 Silent p.F296F 0.16 TCGA-C5-A7UI-01 12 130648572 130648572 C T FZD10 Missense_Mutation p.P362L 0.31 deleterious(0) probably_damaging(1) TCGA-C5-A7UI-01 12 23689405 23689405 C T SOX5 Missense_Mutation p.R657Q 0.15 deleterious(0.02) probably_damaging(0.99) TCGA-C5-A7UI-01 12 49448134 49448134 C T KMT2D Missense_Mutation p.E156K 0.25 unknown(0) TCGA-C5-A7UI-01 12 49448347 49448347 C A KMT2D Nonsense_Mutation p.E122* 0.26 TCGA-C5-A7UI-01 12 49524981 49524981 G A TUBA1B Intron 0.41 TCGA-C5-A7UI-01 12 55641766 55641766 G T OR6C74 Missense_Mutation p.R232I 0.14 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-C5-A7UI-01 12 57864774 57864774 C T GLI1 Silent p.L751L 0.22 TCGA-C5-A7UI-01 12 72955952 72955961 TAACCATTCA - TRHDE Frame_Shift_Del p.T555Sfs*18 0.21 TCGA-C5-A7UI-01 12 752598 752598 G T NINJ2 Intron 0.18 TCGA-C5-A7UI-01 12 83251282 83251282 C T TMTC2 Missense_Mutation p.L193F 0.38 deleterious(0.04) probably_damaging(0.968) TCGA-C5-A7UI-01 12 88376963 88376963 G A C12orf50 Missense_Mutation p.T379M 0.12 tolerated(0.47) benign(0.005) TCGA-C5-A7UI-01 12 95689845 95689845 G A VEZT Missense_Mutation p.D548N 0.28 tolerated(0.14) probably_damaging(0.928) TCGA-C5-A7UI-01 13 113516793 113516793 C G ATP11A Missense_Mutation p.F965L 0.10 deleterious(0.05) possibly_damaging(0.562) TCGA-C5-A7UI-01 13 23904780 23904780 C G SACS Missense_Mutation p.R4412T 0.12 benign(0.118) TCGA-C5-A7UI-01 13 24876866 24876866 G A SPATA13 Silent p.S1263S 0.19 TCGA-C5-A7UI-01 13 39455800 39455800 G A FREM2 3'UTR 0.07 TCGA-C5-A7UI-01 13 42044945 42044945 G A RGCC 3'UTR 0.26 TCGA-C5-A7UI-01 14 102550870 102550870 C G HSP90AA1 Missense_Mutation p.R460T 0.30 tolerated_low_confidence(0.05) unknown(0) TCGA-C5-A7UI-01 14 20764001 20764001 C T TTC5 Missense_Mutation p.E237K 0.27 deleterious(0.01) possibly_damaging(0.593) TCGA-C5-A7UI-01 14 21550091 21550091 G C ARHGEF40 Missense_Mutation p.E1022Q 0.23 tolerated(0.26) benign(0.007) TCGA-C5-A7UI-01 14 45642277 45642277 G A FANCM Missense_Mutation p.G727E 0.16 deleterious(0) benign(0.218) TCGA-C5-A7UI-01 14 55900411 55900411 C T TBPL2 Missense_Mutation p.R242Q 0.38 deleterious(0) possibly_damaging(0.747) TCGA-C5-A7UI-01 14 68066914 68066914 C A PIGH Missense_Mutation p.D3Y 0.18 deleterious_low_confidence(0) benign(0.13) TCGA-C5-A7UI-01 14 68066915 68066915 C T PIGH Silent p.E2E 0.18 TCGA-C5-A7UI-01 14 90873815 90873815 G A CALM1 3'UTR 0.20 TCGA-C5-A7UI-01 14 94048589 94048589 G C UNC79 Missense_Mutation p.R724T 0.21 tolerated(0.05) benign(0.054) TCGA-C5-A7UI-01 15 28467198 28467198 A C HERC2 Silent p.G1876G 0.14 TCGA-C5-A7UI-01 15 40582988 40582988 C G PLCB2 Silent p.L1029L 0.19 TCGA-C5-A7UI-01 15 42834758 42834758 C T LRRC57 3'UTR 0.14 TCGA-C5-A7UI-01 15 48443718 48443718 C T MYEF2 Missense_Mutation p.G420S 0.24 tolerated(0.35) benign(0.018) TCGA-C5-A7UI-01 15 65223826 65223826 G A ANKDD1A Intron 0.26 TCGA-C5-A7UI-01 15 71124594 71124594 C T LARP6 Missense_Mutation p.V425I 0.15 tolerated(1) benign(0.001) TCGA-C5-A7UI-01 15 72578391 72578391 G C CELF6 3'UTR 0.36 TCGA-C5-A7UI-01 15 74425391 74425391 G A ISLR2 Missense_Mutation p.S99N 0.17 deleterious(0.02) probably_damaging(0.992) TCGA-C5-A7UI-01 15 85053064 85053064 G A GOLGA6L5P 3'Flank 0.30 TCGA-C5-A7UI-01 16 27225031 27225031 G C KDM8 Silent p.L246L 0.21 TCGA-C5-A7UI-01 16 2815156 2815156 C G SRRM2 Missense_Mutation p.Q1543E 0.27 unknown(0) TCGA-C5-A7UI-01 16 4504882 4504882 C G DNAJA3 Missense_Mutation p.F470L 0.13 tolerated(0.15) benign(0.006) TCGA-C5-A7UI-01 17 26940112 26940112 T A SGK494 Missense_Mutation p.E154V 0.25 deleterious(0) probably_damaging(0.998) TCGA-C5-A7UI-01 17 35345890 35345890 G C AATF Missense_Mutation p.K340N 0.43 deleterious(0) possibly_damaging(0.896) TCGA-C5-A7UI-01 17 39183428 39183428 G C KRTAP1-5 5'UTR 0.22 TCGA-C5-A7UI-01 17 42328834 42328834 G A SLC4A1 Silent p.L812L 0.17 TCGA-C5-A7UI-01 17 42461464 42461464 G A ITGA2B Missense_Mutation p.R312C 0.32 tolerated(0.06) benign(0.229) TCGA-C5-A7UI-01 17 5071268 5071268 G A USP6 Silent p.A1026A 0.20 TCGA-C5-A7UI-01 17 649746 649746 C T GEMIN4 Missense_Mutation p.E513K 0.24 tolerated(0.92) benign(0.01) TCGA-C5-A7UI-01 17 65340781 65340781 C A PSMD12 Missense_Mutation p.G342C 0.14 deleterious(0.03) possibly_damaging(0.489) TCGA-C5-A7UI-01 17 9066220 9066220 A G NTN1 Missense_Mutation p.N370S 0.33 tolerated(0.08) benign(0.101) TCGA-C5-A7UI-01 18 32918934 32918934 A G ZNF24 Intron 0.25 TCGA-C5-A7UI-01 18 42281787 42281787 C G SETBP1 Missense_Mutation p.S159C 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-C5-A7UI-01 18 65180639 65180639 C G DSEL Missense_Mutation p.D413H 0.24 tolerated(0.09) benign(0.02) TCGA-C5-A7UI-01 18 65180839 65180839 C A DSEL Missense_Mutation p.W346L 0.26 deleterious(0) probably_damaging(0.999) TCGA-C5-A7UI-01 18 76754241 76754241 C T SALL3 Silent p.N750N 0.33 TCGA-C5-A7UI-01 19 10946730 10946730 G C TMED1 Missense_Mutation p.F46L 0.27 deleterious(0.02) probably_damaging(0.914) TCGA-C5-A7UI-01 19 13064288 13064288 C A RAD23A 3'UTR 0.27 TCGA-C5-A7UI-01 19 13265399 13265399 C G IER2 3'UTR 0.08 TCGA-C5-A7UI-01 19 1555383 1555383 C G MEX3D 3'UTR 0.24 TCGA-C5-A7UI-01 19 16957798 16957798 G A SIN3B Silent p.T200T 0.27 TCGA-C5-A7UI-01 19 17058034 17058034 A G CPAMD8 Missense_Mutation p.Y885H 0.29 tolerated(1) benign(0.002) TCGA-C5-A7UI-01 19 17740966 17740966 C A UNC13A Missense_Mutation p.R1219S 0.28 deleterious(0.01) benign(0.021) TCGA-C5-A7UI-01 19 20002610 20002610 C G ZNF253 Nonsense_Mutation p.S185* 0.28 TCGA-C5-A7UI-01 19 33706758 33706758 G C SLC7A10 Silent p.L91L 0.31 TCGA-C5-A7UI-01 19 44377496 44377496 C G ZNF404 Missense_Mutation p.K290N 0.20 deleterious(0) possibly_damaging(0.785) TCGA-C5-A7UI-01 19 46192539 46192539 C G SNRPD2 Intron 0.15 TCGA-C5-A7UI-01 19 46214438 46214438 G C FBXO46 3'UTR 0.15 TCGA-C5-A7UI-01 19 46278260 46278260 C T DMPK Silent p.P403P 0.27 TCGA-C5-A7UI-01 19 51537956 51537956 C G KLK12 Intron 0.38 TCGA-C5-A7UI-01 19 53473702 53473702 C T ZNF702P RNA 0.32 TCGA-C5-A7UI-01 19 56466478 56466478 G A NLRP8 Missense_Mutation p.V352I 0.27 tolerated(0.52) benign(0.032) TCGA-C5-A7UI-01 19 7509232 7509232 G A ARHGEF18 Silent p.T313T 0.17 TCGA-C5-A7UI-01 19 9299241 9299241 C G OR7D2 3'UTR 0.22 TCGA-C5-A7UI-01 1 112533566 112533566 G A KCND3 5'Flank 0.48 TCGA-C5-A7UI-01 1 1335602 1335602 G C RP4-758J18.2 Missense_Mutation p.R68P 0.36 unknown(0) TCGA-C5-A7UI-01 1 145588983 145588983 G A NUDT17 Nonsense_Mutation p.R89* 0.24 TCGA-C5-A7UI-01 1 152552117 152552117 C T LCE3D 3'UTR 0.32 TCGA-C5-A7UI-01 1 155217174 155217174 C T FAM189B 3'UTR 0.24 TCGA-C5-A7UI-01 1 156126291 156126291 C T SEMA4A Missense_Mutation p.L76F 0.09 deleterious(0) probably_damaging(1) TCGA-C5-A7UI-01 1 159683510 159683510 G A CRP Silent p.F160F 0.10 TCGA-C5-A7UI-01 1 185956566 185956566 C T HMCN1 Silent p.L980L 0.30 TCGA-C5-A7UI-01 1 190250710 190250710 A G BRINP3 Missense_Mutation p.L136S 0.13 deleterious(0) possibly_damaging(0.691) TCGA-C5-A7UI-01 1 19557342 19557342 C T EMC1 Missense_Mutation p.R687Q 0.31 tolerated(0.14) benign(0.301) TCGA-C5-A7UI-01 1 198704261 198704261 G A PTPRC Silent p.K761K 0.32 TCGA-C5-A7UI-01 1 21221890 21221890 G A EIF4G3 Missense_Mutation p.P652S 0.49 deleterious(0) probably_damaging(0.999) TCGA-C5-A7UI-01 1 223807952 223807952 G C CAPN8 Intron 0.20 TCGA-C5-A7UI-01 1 26873376 26873376 G A RPS6KA1 Missense_Mutation p.E52K 0.28 deleterious(0.01) benign(0.183) TCGA-C5-A7UI-01 1 32508607 32508607 G A KHDRBS1 3'UTR 0.23 TCGA-C5-A7UI-01 1 32671812 32671812 G A IQCC Missense_Mutation p.E114K 0.29 deleterious(0) probably_damaging(0.986) TCGA-C5-A7UI-01 1 35559673 35559673 G A ZMYM1 Missense_Mutation p.D29N 0.31 tolerated_low_confidence(0.06) possibly_damaging(0.794) TCGA-C5-A7UI-01 1 41094511 41094511 C G RIMS3 Missense_Mutation p.D229H 0.33 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-C5-A7UI-01 1 74819007 74819007 C G FPGT-TNNI3K Silent p.V444V 0.31 TCGA-C5-A7UI-01 1 9789647 9789647 C G CLSTN1 3'UTR 0.36 TCGA-C5-A7UI-01 20 33067483 33067483 C T ITCH Silent p.C610C 0.20 TCGA-C5-A7UI-01 20 47990134 47990134 C T KCNB1 Missense_Mutation p.E655K 0.25 tolerated_low_confidence(0.05) benign(0.338) TCGA-C5-A7UI-01 20 5159500 5159500 G A CDS2 Missense_Mutation p.E143K 0.25 deleterious(0) probably_damaging(0.973) TCGA-C5-A7UI-01 22 24472119 24472119 G T CABIN1 Silent p.G878G 0.12 TCGA-C5-A7UI-01 22 30218437 30218437 G A ASCC2 Missense_Mutation p.P143L 0.22 deleterious(0) benign(0.297) TCGA-C5-A7UI-01 22 38109305 38109305 C G TRIOBP Missense_Mutation p.L115V 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.577) TCGA-C5-A7UI-01 2 102083239 102083239 C A RFX8 Missense_Mutation p.K24N 0.25 deleterious(0.01) benign(0.414) TCGA-C5-A7UI-01 2 10584315 10584315 G C ODC1 Missense_Mutation p.Q119E 0.33 deleterious(0.01) probably_damaging(0.941) TCGA-C5-A7UI-01 2 108604723 108604723 C T SLC5A7 Missense_Mutation p.R38C 0.20 deleterious(0.03) possibly_damaging(0.462) TCGA-C5-A7UI-01 2 152354358 152354358 C T NEB Intron 0.25 TCGA-C5-A7UI-01 2 173832051 173832051 G C RAPGEF4 Missense_Mutation p.E295Q 0.19 tolerated(0.3) possibly_damaging(0.854) TCGA-C5-A7UI-01 2 183790508 183790509 - AA NCKAP1 Frame_Shift_Ins p.L1109Ffs*11 0.20 TCGA-C5-A7UI-01 2 203407170 203407170 G A BMPR2 Silent p.L471L 0.19 TCGA-C5-A7UI-01 2 215797351 215797351 G A ABCA12 3'UTR 0.45 TCGA-C5-A7UI-01 2 232392911 232392911 G A NMUR1 Missense_Mutation p.S274F 0.24 deleterious(0.03) benign(0.181) TCGA-C5-A7UI-01 2 240964735 240964735 C T NDUFA10 5'UTR 0.28 TCGA-C5-A7UI-01 2 3623205 3623205 C T RPS7 Silent p.F2F 0.09 TCGA-C5-A7UI-01 2 50574330 50574330 C T NRXN1 Intron 0.32 TCGA-C5-A7UI-01 2 70904965 70904965 C T ADD2 Silent p.P476P 0.17 TCGA-C5-A7UI-01 2 73676114 73676114 C T ALMS1 Silent p.F819F 0.23 TCGA-C5-A7UI-01 2 75891800 75891800 C T GCFC2 Missense_Mutation p.E780K 0.29 tolerated_low_confidence(0.39) benign(0.014) TCGA-C5-A7UI-01 2 88751551 88751551 G A FOXI3 RNA 0.21 TCGA-C5-A7UI-01 3 105295132 105295132 G C ALCAM 3'UTR 0.09 TCGA-C5-A7UI-01 3 121647880 121647880 C G SLC15A2 Missense_Mutation p.H465D 0.23 tolerated(0.64) benign(0.002) TCGA-C5-A7UI-01 3 128198427 128198428 AG - GATA2 3'UTR 0.18 TCGA-C5-A7UI-01 3 131274364 131274364 C T CPNE4 Missense_Mutation p.A365T 0.39 deleterious(0) possibly_damaging(0.516) TCGA-C5-A7UI-01 3 138091730 138091730 C T MRAS Missense_Mutation p.A2V 0.32 deleterious(0) possibly_damaging(0.449) TCGA-C5-A7UI-01 3 147132190 147132190 G A ZIC1 3'UTR 0.18 TCGA-C5-A7UI-01 3 168547093 168547093 G A EGFEM1P RNA 0.18 TCGA-C5-A7UI-01 3 22414020 22414020 G A ZNF385D RNA 0.56 TCGA-C5-A7UI-01 3 49927461 49927461 C T MST1R Silent p.L1281L 0.18 TCGA-C5-A7UI-01 3 50154523 50154523 G A RBM5 Missense_Mutation p.R704Q 0.24 deleterious(0) probably_damaging(0.921) TCGA-C5-A7UI-01 3 65415641 65415641 G A MAGI1 Missense_Mutation p.A574V 0.33 deleterious(0.01) possibly_damaging(0.764) TCGA-C5-A7UI-01 4 119660426 119660426 G A SEC24D Missense_Mutation p.T752M 0.19 deleterious(0) probably_damaging(1) TCGA-C5-A7UI-01 4 122836006 122836006 G C TRPC3 Missense_Mutation p.L424V 0.06 tolerated(0.13) benign(0.285) TCGA-C5-A7UI-01 4 164087623 164087623 G A NAF1 Missense_Mutation p.P86L 0.13 tolerated_low_confidence(0.06) benign(0) TCGA-C5-A7UI-01 4 1818554 1818554 T C LETM1 Missense_Mutation p.R611G 0.18 deleterious(0) probably_damaging(0.985) TCGA-C5-A7UI-01 4 184238717 184238717 G A WWC2 3'UTR 0.21 TCGA-C5-A7UI-01 4 1986621 1986621 G T NELFA Missense_Mutation p.P328H 0.48 deleterious(0) benign(0.417) TCGA-C5-A7UI-01 4 68934338 68934338 C T TMPRSS11F Nonsense_Mutation p.W251* 0.46 TCGA-C5-A7UI-01 4 75041014 75041014 C T MTHFD2L Silent p.L115L 0.28 TCGA-C5-A7UI-01 4 8098989 8098989 C T ABLIM2 Missense_Mutation p.E59K 0.33 tolerated(0.05) possibly_damaging(0.812) TCGA-C5-A7UI-01 5 153085598 153085598 C T GRIA1 Silent p.F608F 0.56 TCGA-C5-A7UI-01 5 159766579 159766579 G C CCNJL 5'Flank 0.24 TCGA-C5-A7UI-01 5 179041324 179041324 C T HNRNPH1 3'UTR 0.10 TCGA-C5-A7UI-01 6 11185486 11185486 G A NEDD9 Missense_Mutation p.T805M 0.16 deleterious(0) possibly_damaging(0.631) TCGA-C5-A7UI-01 6 167728837 167728837 C T UNC93A Missense_Mutation p.A424V 0.27 tolerated(0.13) benign(0.107) TCGA-C5-A7UI-01 6 24134744 24134744 G - NRSN1 Frame_Shift_Del 0.15 TCGA-C5-A7UI-01 6 8102707 8102707 C G EEF1E1 Silent p.L16L 0.10 TCGA-C5-A7UI-01 6 90605771 90605771 G C GJA10 Missense_Mutation p.W528C 0.09 deleterious_low_confidence(0.01) benign(0.253) TCGA-C5-A7UI-01 7 100419909 100419909 C T EPHB4 Silent p.G264G 0.18 TCGA-C5-A7UI-01 7 100551826 100551826 C A MUC3A Missense_Mutation p.Q193K 0.26 tolerated(1) benign(0.002) TCGA-C5-A7UI-01 7 105752734 105752734 G A SYPL1 Intron 0.21 TCGA-C5-A7UI-01 7 123101425 123101425 C G IQUB Missense_Mutation p.A665P 0.10 tolerated(0.22) benign(0.225) TCGA-C5-A7UI-01 7 131825431 131825431 G A PLXNA4 Silent p.L1789L 0.17 TCGA-C5-A7UI-01 7 141872553 141872553 C A RP11-1220K2.2 Missense_Mutation p.Q1184K 0.68 probably_damaging(0.925) TCGA-C5-A7UI-01 7 142250994 142250994 G T TRBV6-4 Missense_Mutation p.P18Q 0.11 tolerated(0.32) benign(0.041) TCGA-C5-A7UI-01 7 143453649 143453649 G A CTAGE6 Missense_Mutation p.S368L 0.17 deleterious(0.02) benign(0.16) TCGA-C5-A7UI-01 7 151919764 151919764 C T KMT2C Nonsense_Mutation p.W1109* 0.38 TCGA-C5-A7UI-01 7 30054359 30054359 C G FKBP14 Missense_Mutation p.E210Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-C5-A7UI-01 7 891037 891037 G A SUN1 Silent p.Q225Q 0.30 TCGA-C5-A7UI-01 7 98639790 98639790 G A SMURF1 Missense_Mutation p.T467M 0.23 deleterious(0.02) possibly_damaging(0.806) TCGA-C5-A7UI-01 8 105368544 105368544 G C DCSTAMP 3'UTR 0.21 TCGA-C5-A7UI-01 8 145694756 145694756 C A KIFC2 Missense_Mutation p.L406I 0.21 deleterious(0.01) possibly_damaging(0.676) TCGA-C5-A7UI-01 8 42821719 42821719 G A HOOK3 Missense_Mutation p.E295K 0.22 deleterious(0) probably_damaging(0.936) TCGA-C5-A7UI-01 8 6302135 6302135 G A MCPH1 Missense_Mutation p.E298K 0.44 tolerated(0.2) benign(0.007) TCGA-C5-A7UI-01 8 68018166 68018166 C T CSPP1 Missense_Mutation p.S359F 0.20 deleterious(0) possibly_damaging(0.694) TCGA-C5-A7UI-01 8 77593660 77593660 G A ZFHX4 5'UTR 0.23 TCGA-C5-A7UI-01 8 9634240 9634240 G C TNKS Missense_Mutation p.K1326N 0.27 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-C5-A7UI-01 8 97258590 97258590 C G MTERFD1 Missense_Mutation p.R257T 0.26 deleterious(0) probably_damaging(1) TCGA-C5-A7UI-01 9 113550043 113550043 G A MUSK Missense_Mutation p.D618N 0.35 deleterious(0) probably_damaging(0.98) TCGA-C5-A7UI-01 9 121976308 121976308 C T BRINP1 Missense_Mutation p.E271K 0.37 tolerated(0.43) benign(0.039) TCGA-C5-A7UI-01 9 125423929 125423929 C G OR1L1 5'Flank 0.23 TCGA-C5-A7UI-01 9 136412241 136412241 C T ADAMTSL2 Missense_Mutation p.T282M 0.25 deleterious(0) probably_damaging(0.995) TCGA-C5-A7UI-01 9 37745837 37745837 G C FRMPD1 Missense_Mutation p.E1270Q 0.28 tolerated_low_confidence(0.29) benign(0.031) TCGA-C5-A7UI-01 X 105855324 105855324 C T CXorf57 Missense_Mutation p.S5L 0.11 tolerated_low_confidence(0.24) benign(0.001) TCGA-C5-A7UI-01 X 140969483 140969483 G A MAGEC3 Missense_Mutation p.M270I 0.29 tolerated(0.13) benign(0.072) TCGA-C5-A7UI-01 X 152860092 152860092 G A FAM58A Silent p.F112F 0.29 TCGA-C5-A7UI-01 X 37534919 37534919 C T LANCL3 Silent p.F372F 0.19 TCGA-C5-A7UI-01 X 47696329 47696329 C T ZNF81 5'UTR 0.30 TCGA-C5-A7UI-01 X 54471938 54471938 C A FGD1 3'UTR 0.49 TCGA-C5-A7UI-01 X 55782317 55782317 G A RRAGB Missense_Mutation p.R288K 0.16 deleterious(0.03) possibly_damaging(0.856) TCGA-C5-A7UI-01 X 6069220 6069220 G A NLGN4X Silent p.S96S 0.36 TCGA-C5-A7UI-01 X 83730263 83730263 A G HDX Missense_Mutation p.V48A 0.21 deleterious(0) probably_damaging(0.913) TCGA-C5-A7UI-01 X 84347318 84347318 C T SATL1 3'UTR 0.42 TCGA-C5-A7X3-01 10 114799868 114799869 - CAC TCF7L2 In_Frame_Ins p.P180dup 0.23 TCGA-C5-A7X3-01 10 23297813 23297813 A C ARMC3 Silent p.G666G 0.09 TCGA-C5-A7X3-01 10 50820605 50820605 G A SLC18A3 3'UTR 0.21 TCGA-C5-A7X3-01 10 51027509 51027509 G - PARG Frame_Shift_Del p.Y451* 0.16 TCGA-C5-A7X3-01 11 111168751 111168751 C T COLCA1 5'UTR 0.14 TCGA-C5-A7X3-01 11 118922845 118922845 G A HYOU1 Missense_Mutation p.R388W 0.12 deleterious(0) probably_damaging(1) TCGA-C5-A7X3-01 11 1255050 1255050 C T MUC5B Silent p.C783C 0.19 TCGA-C5-A7X3-01 11 61070628 61070628 C T DDB1 Splice_Site p.X945_splice 0.09 TCGA-C5-A7X3-01 11 612188 612188 C G PHRF1 3'Flank 0.22 TCGA-C5-A7X3-01 11 61546883 61546883 C T MYRF Missense_Mutation p.S721L 0.16 deleterious(0.02) benign(0.194) TCGA-C5-A7X3-01 11 66105270 66105270 T C BRMS1 Missense_Mutation p.T248A 0.20 tolerated_low_confidence(0.71) benign(0.001) TCGA-C5-A7X3-01 11 86662556 86662556 G C FZD4 Missense_Mutation p.F414L 0.11 tolerated(0.06) possibly_damaging(0.585) TCGA-C5-A7X3-01 12 21953968 21953968 A G ABCC9 3'UTR 0.27 TCGA-C5-A7X3-01 12 52760936 52760939 CCGG - KRT85 Frame_Shift_Del p.S84Wfs*35 0.43 TCGA-C5-A7X3-01 12 54797012 54797012 G A ITGA5 Missense_Mutation p.P625S 0.28 deleterious(0) probably_damaging(1) TCGA-C5-A7X3-01 12 54797013 54797013 C A ITGA5 Missense_Mutation p.R624S 0.29 tolerated(0.16) benign(0.111) TCGA-C5-A7X3-01 12 57009107 57009107 G A BAZ2A Missense_Mutation p.R143W 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-C5-A7X3-01 12 8050926 8050926 G A NANOGP1 RNA 0.12 TCGA-C5-A7X3-01 13 47315857 47315857 C T LRCH1 Silent p.L722L 0.16 TCGA-C5-A7X3-01 14 22509252 22509252 G A TRAV20 Missense_Mutation p.G64S 0.09 deleterious(0.03) possibly_damaging(0.58) TCGA-C5-A7X3-01 14 24683549 24683549 C G NEDD8-MDP1 Missense_Mutation p.E141Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-C5-A7X3-01 15 34640436 34640436 G C NUTM1 Missense_Mutation p.E95Q 0.14 tolerated(0.06) possibly_damaging(0.644) TCGA-C5-A7X3-01 15 35530079 35530079 G C ANP32AP1 RNA 0.07 TCGA-C5-A7X3-01 15 41275164 41275164 C T INO80 Missense_Mutation p.R1450Q 0.13 tolerated(0.11) probably_damaging(0.968) TCGA-C5-A7X3-01 16 1819663 1819663 C T MAPK8IP3 3'UTR 0.20 TCGA-C5-A7X3-01 16 18848678 18848678 G A SMG1 Nonsense_Mutation p.Q2501* 0.09 TCGA-C5-A7X3-01 16 2152434 2152434 G T PKD1 Missense_Mutation p.A3050D 0.12 probably_damaging(0.932) TCGA-C5-A7X3-01 16 28843711 28843711 C T ATXN2L Missense_Mutation p.P503S 0.20 tolerated(0.18) benign(0.003) TCGA-C5-A7X3-01 16 3781324 3781326 AGG - CREBBP In_Frame_Del p.S1680del 0.12 TCGA-C5-A7X3-01 16 67578977 67578977 T C FAM65A Silent p.Y1016Y 0.20 TCGA-C5-A7X3-01 16 839322 839322 G A CHTF18 Silent p.P133P 0.21 TCGA-C5-A7X3-01 16 88705500 88705500 G A IL17C Missense_Mutation p.E40K 0.23 tolerated(0.11) possibly_damaging(0.507) TCGA-C5-A7X3-01 16 89825057 89825057 G A FANCA Missense_Mutation p.S970L 0.12 tolerated(0.49) benign(0.307) TCGA-C5-A7X3-01 17 38438208 38438209 CA - WIPF2 3'UTR 0.30 TCGA-C5-A7X3-01 17 40330492 40330492 G A KCNH4 Missense_Mutation p.S105L 0.15 tolerated(0.22) benign(0.065) TCGA-C5-A7X3-01 17 72540766 72540766 C G CD300C Missense_Mutation p.E128Q 0.11 tolerated(0.43) benign(0.219) TCGA-C5-A7X3-01 17 76183496 76183498 GAA - AFMID In_Frame_Del p.K17del 0.35 TCGA-C5-A7X3-01 17 78115583 78115583 G C EIF4A3 Missense_Mutation p.Q103E 0.08 tolerated(0.23) benign(0.105) TCGA-C5-A7X3-01 17 78115614 78115614 G A EIF4A3 Silent p.F92F 0.09 TCGA-C5-A7X3-01 17 78317800 78317800 G A RNF213 Silent p.R2109R 0.23 TCGA-C5-A7X3-01 17 80684800 80684800 C G FN3KRP Missense_Mutation p.S228C 0.10 deleterious(0.04) possibly_damaging(0.778) TCGA-C5-A7X3-01 18 44559875 44559875 A T TCEB3B Missense_Mutation p.N587K 0.15 tolerated(0.08) benign(0.001) TCGA-C5-A7X3-01 19 1223012 1223012 G A STK11 Missense_Mutation p.E317K 0.23 tolerated(0.51) benign(0.15) TCGA-C5-A7X3-01 19 1223135 1223135 G A STK11 Missense_Mutation p.D358N 0.32 tolerated(0.17) possibly_damaging(0.69) TCGA-C5-A7X3-01 19 1223138 1223138 G T STK11 Missense_Mutation p.D359Y 0.34 deleterious(0) benign(0.372) TCGA-C5-A7X3-01 19 34302236 34302236 G A KCTD15 Missense_Mutation p.E158K 0.11 tolerated(0.12) benign(0.081) TCGA-C5-A7X3-01 19 37383008 37383008 G A ZNF829 Nonsense_Mutation p.Q310* 0.14 TCGA-C5-A7X3-01 19 45537560 45537560 G C RELB Silent p.L422L 0.09 TCGA-C5-A7X3-01 19 57967372 57967372 C G VN1R1 Missense_Mutation p.K161N 0.10 deleterious(0.02) possibly_damaging(0.516) TCGA-C5-A7X3-01 19 57967496 57967496 C G VN1R1 Missense_Mutation p.G120A 0.12 tolerated(0.08) possibly_damaging(0.737) TCGA-C5-A7X3-01 1 179851995 179851995 G A TOR1AIP1 Missense_Mutation p.E120K 0.31 deleterious_low_confidence(0.05) benign(0.212) TCGA-C5-A7X3-01 1 21991720 21991720 G A RAP1GAP 5'UTR 0.20 TCGA-C5-A7X3-01 1 240256097 240256097 G A FMN2 Missense_Mutation p.E230K 0.28 unknown(0) TCGA-C5-A7X3-01 1 247492545 247492545 C T ZNF496 Silent p.Q112Q 0.08 TCGA-C5-A7X3-01 1 54683899 54683899 C G MRPL37 Missense_Mutation p.L417V 0.11 tolerated(0.06) possibly_damaging(0.899) TCGA-C5-A7X3-01 1 75009599 75009599 C A TNNI3K Missense_Mutation p.S915Y 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-C5-A7X3-01 21 32253413 32253413 G A KRTAP11-1 Missense_Mutation p.A144V 0.32 tolerated(0.44) benign(0.034) TCGA-C5-A7X3-01 22 39112679 39112679 G A GTPBP1 Missense_Mutation p.D170N 0.16 deleterious(0) probably_damaging(0.996) TCGA-C5-A7X3-01 22 41222023 41222023 C T ST13 3'UTR 0.20 TCGA-C5-A7X3-01 2 169629051 169629051 G A CERS6 3'UTR 0.11 TCGA-C5-A7X3-01 2 171678647 171678647 C G GAD1 Missense_Mutation p.L45V 0.15 tolerated_low_confidence(0.25) benign(0.058) TCGA-C5-A7X3-01 2 17697627 17697627 C G RAD51AP2 Missense_Mutation p.E686Q 0.10 tolerated(0.08) possibly_damaging(0.884) TCGA-C5-A7X3-01 2 208687082 208687082 G A AC096772.6 RNA 0.07 TCGA-C5-A7X3-01 2 232320742 232320742 C T NCL Missense_Mutation p.R604Q 0.08 possibly_damaging(0.59) TCGA-C5-A7X3-01 2 234112927 234112927 G A INPP5D Missense_Mutation p.R1032Q 0.14 deleterious(0.03) possibly_damaging(0.793) TCGA-C5-A7X3-01 2 36739535 36739535 G C CRIM1 Missense_Mutation p.R593T 0.15 deleterious(0.01) probably_damaging(0.942) TCGA-C5-A7X3-01 3 148577823 148577823 C G CPB1 3'UTR 0.26 TCGA-C5-A7X3-01 3 178742499 178742499 T C ZMAT3 3'UTR 0.14 TCGA-C5-A7X3-01 3 197411027 197411027 C G KIAA0226 Splice_Site p.X616_splice 0.08 TCGA-C5-A7X3-01 3 33429864 33429864 A G UBP1 3'UTR 0.11 TCGA-C5-A7X3-01 3 38768438 38768438 G A SCN10A Missense_Mutation p.R916W 0.24 deleterious(0) probably_damaging(0.999) TCGA-C5-A7X3-01 3 432657 432657 A T CHL1 Missense_Mutation p.K869I 0.08 deleterious(0.03) probably_damaging(0.952) TCGA-C5-A7X3-01 3 52476766 52476766 C T SEMA3G Silent p.R91R 0.19 TCGA-C5-A7X3-01 3 52570872 52570872 G T SMIM4 Missense_Mutation p.G34V 0.21 deleterious(0) possibly_damaging(0.54) TCGA-C5-A7X3-01 3 58817516 58817516 C A C3orf67 Missense_Mutation p.A440S 0.26 tolerated(0.26) benign(0.003) TCGA-C5-A7X3-01 3 71090577 71090577 T A FOXP1 Silent p.T259T 0.12 TCGA-C5-A7X3-01 3 74350921 74350921 C T CNTN3 Missense_Mutation p.E608K 0.09 deleterious(0.03) benign(0.3) TCGA-C5-A7X3-01 4 153831234 153831234 C T ARFIP1 Nonsense_Mutation p.Q329* 0.10 TCGA-C5-A7X3-01 4 71701907 71701907 C T GRSF1 Missense_Mutation p.C161Y 0.08 deleterious(0.04) probably_damaging(0.974) TCGA-C5-A7X3-01 5 175819939 175819939 C T CLTB Missense_Mutation p.E176K 0.23 deleterious(0) probably_damaging(0.972) TCGA-C5-A7X3-01 5 38511901 38511901 T C LIFR Missense_Mutation p.N243D 0.12 tolerated(0.24) benign(0.006) TCGA-C5-A7X3-01 6 2836122 2836122 C T SERPINB1 Missense_Mutation p.D235N 0.25 tolerated(0.11) benign(0.007) TCGA-C5-A7X3-01 6 75964811 75964811 G A TMEM30A 3'UTR 0.12 TCGA-C5-A7X3-01 7 106842150 106842150 G A COG5 3'Flank 0.23 TCGA-C5-A7X3-01 7 120989312 120989312 G A FAM3C 3'UTR 0.09 TCGA-C5-A7X3-01 7 143029958 143029958 G A CLCN1 Missense_Mutation p.V465I 0.18 tolerated(0.99) benign(0.009) TCGA-C5-A7X3-01 7 44012259 44012259 T A POLR2J4 RNA 0.17 TCGA-C5-A7X3-01 7 82764156 82764156 G A PCLO Missense_Mutation p.R904C 0.17 unknown(0) TCGA-C5-A7X3-01 8 144877630 144877630 G C SCRIB Missense_Mutation p.S1225C 0.16 benign(0.117) TCGA-C5-A7X3-01 8 42692833 42692833 A C THAP1 3'UTR 0.22 TCGA-C5-A7X3-01 8 79645810 79645810 C G IL7 3'UTR 0.13 TCGA-C5-A7X3-01 8 92972247 92972247 G C RUNX1T1 3'Flank 0.15 TCGA-C5-A7X3-01 8 95164278 95164278 A C CDH17 Silent p.P538P 0.35 TCGA-C5-A7X3-01 8 9538266 9538266 C T TNKS Silent p.L355L 0.18 TCGA-C5-A7X3-01 9 134404408 134404408 G A UCK1 Nonsense_Mutation p.R181* 0.15 TCGA-C5-A7X3-01 9 139412345 139412345 C A NOTCH1 Missense_Mutation p.G434C 0.16 deleterious(0) probably_damaging(1) TCGA-C5-A7X3-01 9 139621328 139621329 - A FAM69B 3'Flank 0.33 TCGA-C5-A7X3-01 9 19369939 19369939 A G DENND4C Missense_Mutation p.I1828V 0.13 tolerated(0.29) benign(0.046) TCGA-C5-A7X3-01 9 21216617 21216617 T C IFNA16 3'UTR 0.18 TCGA-C5-A7X3-01 X 144337280 144337280 C T SPANXN1 Silent p.C55C 0.16 TCGA-C5-A7X3-01 X 151123327 151123327 T A GABRE Missense_Mutation p.Y456F 0.13 tolerated(0.82) probably_damaging(0.983) TCGA-C5-A7X3-01 X 155007301 155007301 A G SPRY3 3'UTR 0.33 TCGA-C5-A7X3-01 X 21990688 21990688 C T SMS Nonsense_Mutation p.R110* 0.13 TCGA-C5-A7X3-01 X 53438811 53438811 C G SMC1A Missense_Mutation p.R385T 0.09 tolerated(0.17) benign(0.223) TCGA-C5-A7X3-01 X 99891780 99891780 G A TSPAN6 5'UTR 0.19 TCGA-C5-A7X5-01 10 101150154 101150154 G A CNNM1 Silent p.L922L 0.30 TCGA-C5-A7X5-01 10 115601252 115601252 G A DCLRE1A Silent p.L911L 0.26 TCGA-C5-A7X5-01 10 127408477 127408477 C T EDRF1 Missense_Mutation p.S34F 0.33 tolerated_low_confidence(0.07) unknown(0) TCGA-C5-A7X5-01 10 129861429 129861429 G C PTPRE Missense_Mutation p.L236F 0.19 deleterious(0) possibly_damaging(0.903) TCGA-C5-A7X5-01 10 15648418 15648418 C T ITGA8 Missense_Mutation p.E590K 0.19 deleterious(0) probably_damaging(0.951) TCGA-C5-A7X5-01 10 28966889 28966889 G A BAMBI Silent p.V21V 0.25 TCGA-C5-A7X5-01 10 43293966 43293966 G A BMS1 Missense_Mutation p.G714R 0.35 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 10 49791100 49791100 C T ARHGAP22 Silent p.L44L 0.41 TCGA-C5-A7X5-01 10 51562439 51562439 C T MSMB 3'UTR 0.35 TCGA-C5-A7X5-01 10 5789377 5789377 C T FAM208B Silent p.L1331L 0.16 TCGA-C5-A7X5-01 10 74094905 74094905 G A DNAJB12 3'UTR 0.65 TCGA-C5-A7X5-01 10 77312221 77312221 C T MIR606 RNA 0.25 TCGA-C5-A7X5-01 10 79603282 79603282 C T DLG5 Silent p.L349L 0.29 TCGA-C5-A7X5-01 10 88730272 88730272 A T ADIRF Missense_Mutation p.D55V 0.16 deleterious(0) benign(0.375) TCGA-C5-A7X5-01 10 88811311 88811311 C T GLUD1 3'UTR 0.11 TCGA-C5-A7X5-01 10 89622929 89622929 C A PTEN 5'UTR 0.12 TCGA-C5-A7X5-01 10 96256868 96256868 G - TBC1D12 Frame_Shift_Del p.E451Kfs*8 0.13 TCGA-C5-A7X5-01 11 100814580 100814580 G A ARHGAP42 Missense_Mutation p.D342N 0.25 deleterious(0) probably_damaging(0.998) TCGA-C5-A7X5-01 11 110100753 110100753 C T RDX Intron 0.28 TCGA-C5-A7X5-01 11 111728423 111728423 C T ALG9 Silent p.L30L 0.79 TCGA-C5-A7X5-01 11 118245940 118245940 G A UBE4A Missense_Mutation p.M489I 0.80 tolerated(0.32) benign(0.001) TCGA-C5-A7X5-01 11 121391394 121391394 T A SORL1 Missense_Mutation p.F414I 0.71 tolerated(0.61) benign(0.091) TCGA-C5-A7X5-01 11 1269125 1269125 C A MUC5B Missense_Mutation p.P3672H 0.27 unknown(0) TCGA-C5-A7X5-01 11 14157070 14157070 G A RNA5SP332 3'Flank 0.39 TCGA-C5-A7X5-01 11 1775296 1775296 G C CTSD Silent p.L300L 0.35 TCGA-C5-A7X5-01 11 18195048 18195048 G A MRGPRX4 Missense_Mutation p.R82H 0.71 tolerated(0.56) benign(0.004) TCGA-C5-A7X5-01 11 3428778 3428778 G A TSSC2 RNA 0.23 TCGA-C5-A7X5-01 11 499167 499167 G A RNH1 Silent p.L154L 0.29 TCGA-C5-A7X5-01 11 55594934 55594934 G A OR5L2 Silent p.K80K 0.36 TCGA-C5-A7X5-01 11 55735598 55735598 G A OR10AG1 Silent p.Y114Y 0.24 TCGA-C5-A7X5-01 11 57971604 57971604 T C OR1S2 Missense_Mutation p.E17G 0.11 tolerated(0.54) benign(0) TCGA-C5-A7X5-01 11 58388089 58388089 G A ZFP91 3'UTR 0.27 TCGA-C5-A7X5-01 11 62574513 62574513 G C STX5 3'UTR 0.27 TCGA-C5-A7X5-01 11 62863493 62863493 C T SLC22A24 Missense_Mutation p.R347Q 0.12 deleterious(0.04) probably_damaging(0.986) TCGA-C5-A7X5-01 11 65380732 65380732 G A MAP3K11 Missense_Mutation p.R166W 0.16 deleterious(0) probably_damaging(0.993) TCGA-C5-A7X5-01 11 66100177 66100177 G A RIN1 Missense_Mutation p.S641F 0.16 deleterious(0) probably_damaging(0.999) TCGA-C5-A7X5-01 11 67808777 67808777 C G TCIRG1 Silent p.V13V 0.30 TCGA-C5-A7X5-01 11 69631102 69631102 G A FGF3 Nonsense_Mutation p.R104* 0.89 TCGA-C5-A7X5-01 11 71202923 71202923 G A NADSYN1 Missense_Mutation p.D580N 0.50 tolerated(0.16) benign(0.012) TCGA-C5-A7X5-01 11 89088209 89088209 G A NOX4 Nonsense_Mutation p.R380* 0.32 TCGA-C5-A7X5-01 11 9228280 9228280 G A DENND5A Silent p.V77V 0.16 TCGA-C5-A7X5-01 11 94917538 94917538 C G SESN3 Intron 0.32 TCGA-C5-A7X5-01 11 95546110 95546110 C T CEP57 Missense_Mutation p.L73F 0.11 deleterious(0) probably_damaging(0.954) TCGA-C5-A7X5-01 12 129293988 129293988 G A SLC15A4 Missense_Mutation p.H348Y 0.14 deleterious(0) possibly_damaging(0.771) TCGA-C5-A7X5-01 12 129559376 129559376 G A TMEM132D Missense_Mutation p.R782W 0.46 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 12 130647840 130647840 C G FZD10 Missense_Mutation p.S118C 0.44 deleterious(0.04) possibly_damaging(0.831) TCGA-C5-A7X5-01 12 20858986 20858986 C T SLCO1C1 Silent p.L125L 0.24 TCGA-C5-A7X5-01 12 22076848 22076848 A G ABCC9 Intron 0.30 TCGA-C5-A7X5-01 12 41374712 41374712 C T CNTN1 Silent p.G602G 0.10 TCGA-C5-A7X5-01 12 41967003 41967003 G T PDZRN4 Nonsense_Mutation p.E808* 0.15 TCGA-C5-A7X5-01 12 48238272 48238272 C T VDR 3'UTR 0.25 TCGA-C5-A7X5-01 12 49692121 49692121 T C PRPH Silent p.S466S 0.39 TCGA-C5-A7X5-01 12 57969513 57969513 G A KIF5A Missense_Mutation p.D666N 0.12 deleterious(0) benign(0.033) TCGA-C5-A7X5-01 12 64860787 64860787 C T TBK1 Silent p.L155L 0.08 TCGA-C5-A7X5-01 12 6636180 6636180 G A NCAPD2 Missense_Mutation p.R953Q 0.33 tolerated(0.06) possibly_damaging(0.701) TCGA-C5-A7X5-01 12 68055954 68055954 A T DYRK2 3'UTR 0.09 TCGA-C5-A7X5-01 12 91445150 91445150 G A KERA Silent p.F344F 0.39 TCGA-C5-A7X5-01 12 99288443 99288443 C T ANKS1B Intron 0.43 TCGA-C5-A7X5-01 13 42774008 42774008 G C DGKH Missense_Mutation p.R819T 0.23 deleterious(0) probably_damaging(0.992) TCGA-C5-A7X5-01 13 58208852 58208852 C A PCDH17 Silent p.I724I 0.23 TCGA-C5-A7X5-01 13 86369437 86369437 C T SLITRK6 Missense_Mutation p.E403K 0.67 tolerated(0.17) possibly_damaging(0.844) TCGA-C5-A7X5-01 14 103371648 103371648 G A TRAF3 Missense_Mutation p.A412T 0.25 tolerated(0.06) possibly_damaging(0.617) TCGA-C5-A7X5-01 14 104173478 104173478 C A XRCC3 Missense_Mutation p.D90Y 0.29 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 14 24517431 24517431 C T LRRC16B 5'Flank 0.28 TCGA-C5-A7X5-01 14 44974954 44974954 C T FSCB Missense_Mutation p.E413K 0.15 tolerated(0.18) possibly_damaging(0.801) TCGA-C5-A7X5-01 14 47389259 47389259 C T MDGA2 Missense_Mutation p.D732N 0.30 tolerated(0.52) benign(0.001) TCGA-C5-A7X5-01 14 57755647 57755647 G A AP5M1 3'UTR 0.37 TCGA-C5-A7X5-01 14 60194073 60194073 C T RTN1 Silent p.S443S 0.48 TCGA-C5-A7X5-01 14 61285492 61285492 C T MNAT1 Missense_Mutation p.S205F 0.11 deleterious(0.01) possibly_damaging(0.581) TCGA-C5-A7X5-01 14 64686038 64686038 G A SYNE2 Silent p.L6590L 0.23 TCGA-C5-A7X5-01 14 73436619 73436619 G A ZFYVE1 3'UTR 0.24 TCGA-C5-A7X5-01 14 74707912 74707912 G A VSX2 Missense_Mutation p.R133Q 0.38 tolerated(0.16) benign(0.082) TCGA-C5-A7X5-01 14 79270067 79270067 C T NRXN3 Nonsense_Mutation p.R344* 0.40 TCGA-C5-A7X5-01 14 95934283 95934283 C T SYNE3 Missense_Mutation p.E56K 0.18 deleterious(0) possibly_damaging(0.79) TCGA-C5-A7X5-01 14 99638466 99638466 G A BCL11B 3'UTR 0.28 TCGA-C5-A7X5-01 14 99638638 99638638 G C BCL11B 3'UTR 0.33 TCGA-C5-A7X5-01 14 99638871 99638871 G C BCL11B 3'UTR 0.19 TCGA-C5-A7X5-01 15 25434591 25434591 G A SNORD115-11 RNA 0.24 TCGA-C5-A7X5-01 15 38644577 38644577 G C SPRED1 3'UTR 0.16 TCGA-C5-A7X5-01 15 43821085 43821085 C T MAP1A Missense_Mutation p.R2472W 0.25 possibly_damaging(0.9) TCGA-C5-A7X5-01 15 45848258 45848258 G A RP11-96O20.2 5'Flank 0.29 TCGA-C5-A7X5-01 15 65687479 65687479 C T IGDCC4 Missense_Mutation p.G510E 0.38 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 15 68434636 68434636 C G PIAS1 Missense_Mutation p.S188C 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-C5-A7X5-01 15 68483700 68483700 G A CALML4 3'Flank 0.30 TCGA-C5-A7X5-01 15 72338622 72338622 C T MYO9A Missense_Mutation p.E95K 0.28 tolerated(0.11) possibly_damaging(0.888) TCGA-C5-A7X5-01 15 80465454 80465454 C G FAH Missense_Mutation p.L269V 0.40 deleterious(0) probably_damaging(0.937) TCGA-C5-A7X5-01 15 90174726 90174726 C T KIF7 Silent p.E1037E 0.19 TCGA-C5-A7X5-01 16 1292149 1292149 G A TPSAB1 Missense_Mutation p.E246K 0.38 tolerated(0.6) benign(0.028) TCGA-C5-A7X5-01 16 15221408 15221408 G A RP11-1186N24.5 RNA 0.42 TCGA-C5-A7X5-01 16 19194963 19194963 A T SYT17 Missense_Mutation p.N149Y 0.25 deleterious(0.01) benign(0) TCGA-C5-A7X5-01 16 22111755 22111755 C T VWA3A Silent p.V123V 0.39 TCGA-C5-A7X5-01 16 30199718 30199718 G A CORO1A Missense_Mutation p.A368T 0.69 tolerated(0.08) benign(0.176) TCGA-C5-A7X5-01 16 32063495 32063495 C A AC142381.1 Missense_Mutation p.S62Y 0.55 benign(0.204) TCGA-C5-A7X5-01 16 3776675 3776675 C A CREBBP 3'UTR 0.74 TCGA-C5-A7X5-01 16 57220392 57220392 C G RSPRY1 5'UTR 0.48 TCGA-C5-A7X5-01 16 67979700 67979700 C T SLC12A4 Silent p.Q940Q 0.39 TCGA-C5-A7X5-01 16 739635 739635 C T WDR24 Silent p.E2E 0.67 TCGA-C5-A7X5-01 16 74442802 74442802 G C CLEC18B 3'UTR 0.11 TCGA-C5-A7X5-01 16 89788955 89788955 C A ZNF276 Silent p.L74L 0.25 TCGA-C5-A7X5-01 17 10428223 10428223 C T MYH2 Missense_Mutation p.D1608N 0.41 deleterious(0) benign(0.169) TCGA-C5-A7X5-01 17 11778470 11778470 G A DNAH9 Missense_Mutation p.D3483N 0.50 benign(0.004) TCGA-C5-A7X5-01 17 15531985 15531985 C G TRIM16 Missense_Mutation p.D547H 0.35 deleterious(0.03) probably_damaging(0.979) TCGA-C5-A7X5-01 17 1943109 1943109 C T DPH1 Silent p.P252P 0.40 TCGA-C5-A7X5-01 17 27037941 27037941 C G PROCA1 Intron 0.31 TCGA-C5-A7X5-01 17 27052356 27052356 C T TLCD1 Missense_Mutation p.R109Q 0.53 tolerated(0.08) benign(0.041) TCGA-C5-A7X5-01 17 27308588 27308588 T C SEZ6 Silent p.T175T 0.42 TCGA-C5-A7X5-01 17 36359012 36359012 C T RP11-1407O15.2 Missense_Mutation p.D227N 0.06 TCGA-C5-A7X5-01 17 40870044 40870044 C A EZH1 Nonsense_Mutation p.E325* 0.30 TCGA-C5-A7X5-01 17 5461801 5461801 C T NLRP1 Missense_Mutation p.E739K 0.26 deleterious(0.04) benign(0.001) TCGA-C5-A7X5-01 17 55940537 55940537 C T CUEDC1 3'UTR 0.69 TCGA-C5-A7X5-01 17 56345368 56345368 C T LPO 3'UTR 0.17 TCGA-C5-A7X5-01 17 63525413 63525413 G A AXIN2 3'UTR 0.15 TCGA-C5-A7X5-01 17 7464530 7464530 A C TNFSF12-TNFSF13 3'UTR 0.52 TCGA-C5-A7X5-01 17 76887331 76887331 A G DDC8 Missense_Mutation p.S419P 0.61 tolerated(0.1) benign(0.245) TCGA-C5-A7X5-01 17 77015527 77015527 C T C1QTNF1-AS1 3'UTR 0.20 TCGA-C5-A7X5-01 17 78327977 78327977 C T RNF213 Intron 0.11 TCGA-C5-A7X5-01 17 7839681 7839681 C T CNTROB Intron 0.45 TCGA-C5-A7X5-01 17 8732182 8732182 C T PIK3R6 Missense_Mutation p.D339N 0.51 deleterious(0) probably_damaging(0.997) TCGA-C5-A7X5-01 18 12793308 12793308 C T PTPN2 3'UTR 0.17 TCGA-C5-A7X5-01 18 44261973 44261973 C T ST8SIA5 Silent p.T208T 0.27 TCGA-C5-A7X5-01 19 10154344 10154344 G A C3P1 RNA 0.53 TCGA-C5-A7X5-01 19 10439374 10439374 C T RAVER1 Missense_Mutation p.D251N 0.44 deleterious(0.02) probably_damaging(0.991) TCGA-C5-A7X5-01 19 12721523 12721523 G A ZNF490 5'UTR 0.17 TCGA-C5-A7X5-01 19 18001692 18001692 C T SLC5A5 Intron 0.14 TCGA-C5-A7X5-01 19 19313890 19313890 C G NR2C2AP 5'UTR 0.19 TCGA-C5-A7X5-01 19 19606987 19606987 G C GATAD2A Missense_Mutation p.A295P 0.12 deleterious(0.01) possibly_damaging(0.759) TCGA-C5-A7X5-01 19 23990741 23990741 G A RPSAP58 Intron 0.31 TCGA-C5-A7X5-01 19 39200923 39200923 G A ACTN4 Missense_Mutation p.E254K 0.22 deleterious(0) probably_damaging(0.997) TCGA-C5-A7X5-01 19 40408285 40408285 G C FCGBP Missense_Mutation p.H1518Q 0.13 benign(0.281) TCGA-C5-A7X5-01 19 42841022 42841022 G A MEGF8 Silent p.L436L 0.31 TCGA-C5-A7X5-01 19 42874883 42874883 G A MEGF8 Missense_Mutation p.E2279K 0.16 tolerated(0.09) benign(0.372) TCGA-C5-A7X5-01 19 42881508 42881508 G T MEGF8 3'UTR 0.17 TCGA-C5-A7X5-01 19 42893690 42893690 G A CNFN Intron 0.24 TCGA-C5-A7X5-01 19 44680724 44680724 C A ZNF226 Missense_Mutation p.H437N 0.29 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 19 44934231 44934231 C T ZNF229 Missense_Mutation p.C242Y 0.08 tolerated(0.75) benign(0.367) TCGA-C5-A7X5-01 19 45162113 45162113 C G PVR Missense_Mutation p.F365L 0.31 tolerated(0.31) benign(0.001) TCGA-C5-A7X5-01 19 46393902 46393902 G A MYPOP Silent p.R393R 0.33 TCGA-C5-A7X5-01 19 50840277 50840277 C T NAPSB RNA 0.27 TCGA-C5-A7X5-01 19 52034833 52034833 C T SIGLEC6 Intron 0.25 TCGA-C5-A7X5-01 19 52222632 52222632 C T HAS1 Missense_Mutation p.A177T 0.31 tolerated(0.55) benign(0.001) TCGA-C5-A7X5-01 19 53057055 53057055 T G ZNF808 Missense_Mutation p.F296V 0.26 deleterious(0) probably_damaging(0.994) TCGA-C5-A7X5-01 19 53344493 53344493 C T ZNF468 Missense_Mutation p.E352K 0.24 deleterious(0.03) possibly_damaging(0.849) TCGA-C5-A7X5-01 19 53344906 53344906 G C ZNF468 Missense_Mutation p.S214C 0.15 deleterious(0.04) possibly_damaging(0.869) TCGA-C5-A7X5-01 19 53384108 53384108 C T ZNF320 Missense_Mutation p.R424H 0.35 tolerated(0.43) benign(0.007) TCGA-C5-A7X5-01 19 54327395 54327395 G A NLRP12 Missense_Mutation p.R12C 0.35 tolerated(0.08) benign(0.08) TCGA-C5-A7X5-01 19 55107681 55107681 C T LILRA1 Missense_Mutation p.S329L 0.30 tolerated(0.08) benign(0.26) TCGA-C5-A7X5-01 19 56599995 56599995 G A ZNF787 Silent p.R182R 0.35 TCGA-C5-A7X5-01 19 57335718 57335718 G C PEG3 Silent p.L102L 0.30 TCGA-C5-A7X5-01 19 59061789 59061789 G A TRIM28 Missense_Mutation p.E793K 0.16 deleterious(0.03) possibly_damaging(0.664) TCGA-C5-A7X5-01 19 7830723 7830723 G A CLEC4M Silent p.E138E 0.34 TCGA-C5-A7X5-01 19 8533690 8533690 C T HNRNPM Silent p.F289F 0.21 TCGA-C5-A7X5-01 19 9062273 9062273 C T MUC16 Silent p.T8391T 0.22 TCGA-C5-A7X5-01 19 9063237 9063237 G A MUC16 Missense_Mutation p.S8070F 0.15 unknown(0) TCGA-C5-A7X5-01 1 107600435 107600435 G A PRMT6 Silent p.E366E 0.51 TCGA-C5-A7X5-01 1 113661912 113661912 C G LRIG2 Missense_Mutation p.S913C 0.21 deleterious(0) possibly_damaging(0.894) TCGA-C5-A7X5-01 1 114942120 114942120 C T TRIM33 Missense_Mutation p.D1027N 0.34 deleterious(0.02) probably_damaging(0.982) TCGA-C5-A7X5-01 1 12884922 12884922 C G PRAMEF11 Missense_Mutation p.E397Q 0.20 tolerated(0.11) benign(0.403) TCGA-C5-A7X5-01 1 145804337 145804337 G A GPR89A Silent p.S148S 0.28 TCGA-C5-A7X5-01 1 150463984 150463984 C T TARS2 Silent p.F209F 0.23 TCGA-C5-A7X5-01 1 150679124 150679124 C T HORMAD1 Missense_Mutation p.D237N 0.15 deleterious(0.03) possibly_damaging(0.493) TCGA-C5-A7X5-01 1 151131353 151131353 C T TNFAIP8L2 Silent p.I60I 0.22 TCGA-C5-A7X5-01 1 15421398 15421398 G A KAZN Missense_Mutation p.E506K 0.24 deleterious(0) benign(0.071) TCGA-C5-A7X5-01 1 158299912 158299912 C G CD1B Missense_Mutation p.E113Q 0.19 tolerated(0.17) possibly_damaging(0.731) TCGA-C5-A7X5-01 1 158325745 158325745 C T CD1E Missense_Mutation p.R252W 0.28 tolerated(0.08) benign(0.054) TCGA-C5-A7X5-01 1 161171987 161171987 C T NDUFS2 5'UTR 0.36 TCGA-C5-A7X5-01 1 169519176 169519176 C T F5 Missense_Mutation p.E492K 0.10 deleterious(0.01) possibly_damaging(0.897) TCGA-C5-A7X5-01 1 171303700 171303700 C A FMO4 Missense_Mutation p.F326L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A7X5-01 1 178514796 178514796 G A C1ORF220 Missense_Mutation p.R61Q 0.55 benign(0.417) TCGA-C5-A7X5-01 1 180914399 180914399 G C KIAA1614 Intron 0.29 TCGA-C5-A7X5-01 1 183923961 183923961 G A COLGALT2 Missense_Mutation p.P322S 0.09 deleterious(0.01) benign(0.081) TCGA-C5-A7X5-01 1 186056572 186056572 C T HMCN1 Intron 0.30 TCGA-C5-A7X5-01 1 186057323 186057323 G A HMCN1 Silent p.T3164T 0.13 TCGA-C5-A7X5-01 1 193091351 193091351 C T CDC73 Silent p.V7V 0.30 TCGA-C5-A7X5-01 1 196871683 196871683 G A CFHR4 Missense_Mutation p.G64E 0.24 tolerated(0.88) probably_damaging(0.995) TCGA-C5-A7X5-01 1 20470021 20470021 C T PLA2G2F Silent p.F84F 0.17 TCGA-C5-A7X5-01 1 2116608 2116608 G A PRKCZ 3'UTR 0.15 TCGA-C5-A7X5-01 1 215408687 215408687 G A KCNK2 3'UTR 0.32 TCGA-C5-A7X5-01 1 215901375 215901375 C T USH2A Silent p.V4021V 0.26 TCGA-C5-A7X5-01 1 21903946 21903946 C T ALPL Silent p.A460A 0.17 TCGA-C5-A7X5-01 1 22148630 22148630 C T LDLRAD2 Intron 0.29 TCGA-C5-A7X5-01 1 23636889 23636889 G C HNRNPR 3'UTR 0.19 TCGA-C5-A7X5-01 1 2422643 2422643 C T PLCH2 Nonsense_Mutation p.R483* 0.24 TCGA-C5-A7X5-01 1 24932298 24932298 G C NCMAP 3'UTR 0.24 TCGA-C5-A7X5-01 1 28969391 28969391 C T TAF12 5'UTR 0.11 TCGA-C5-A7X5-01 1 28969558 28969558 C T TAF12 5'Flank 0.18 TCGA-C5-A7X5-01 1 35900635 35900635 C T KIAA0319L Missense_Mutation p.E1004K 0.34 deleterious(0) probably_damaging(0.994) TCGA-C5-A7X5-01 1 36026505 36026505 A T NCDN Silent p.T251T 0.16 TCGA-C5-A7X5-01 1 40027354 40027354 T C PABPC4 Intron 0.18 TCGA-C5-A7X5-01 1 46656288 46656288 G A POMGNT1 Intron 0.19 TCGA-C5-A7X5-01 1 61547644 61547644 C G NFIA Missense_Mutation p.S10W 0.09 probably_damaging(0.931) TCGA-C5-A7X5-01 1 71537857 71537857 C T ZRANB2 Missense_Mutation p.E154K 0.43 tolerated(0.19) possibly_damaging(0.636) TCGA-C5-A7X5-01 1 898733 898733 G A KLHL17 Missense_Mutation p.D402N 0.14 tolerated(0.97) probably_damaging(1) TCGA-C5-A7X5-01 1 92647072 92647072 G A KIAA1107 Missense_Mutation p.D840N 0.42 deleterious(0) probably_damaging(0.981) TCGA-C5-A7X5-01 1 998493 998493 G C RP11-54O7.18 RNA 0.24 TCGA-C5-A7X5-01 20 18165338 18165338 G T CSRP2BP Missense_Mutation p.D693Y 0.31 deleterious(0) probably_damaging(0.978) TCGA-C5-A7X5-01 20 31481082 31481082 C T EFCAB8 Silent p.I287I 0.63 TCGA-C5-A7X5-01 20 48098858 48098858 G A KCNB1 Missense_Mutation p.R54C 0.35 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 20 57474006 57474006 G A GNAS Missense_Mutation p.E718K 0.28 deleterious(0) benign(0.157) TCGA-C5-A7X5-01 20 57768854 57768854 G C ZNF831 Missense_Mutation p.R927T 0.20 tolerated(0.4) benign(0.001) TCGA-C5-A7X5-01 20 57769189 57769189 G C ZNF831 Missense_Mutation p.E1039Q 0.20 tolerated(0.36) benign(0.01) TCGA-C5-A7X5-01 20 60511798 60511798 C T CDH4 Missense_Mutation p.L850F 0.16 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 21 30422459 30422459 A - USP16 Frame_Shift_Del p.I719Sfs*2 0.22 TCGA-C5-A7X5-01 21 32253523 32253523 G A KRTAP11-1 Silent p.V107V 0.36 TCGA-C5-A7X5-01 21 43242375 43242375 C T PRDM15 Missense_Mutation p.D960N 0.27 tolerated(0.09) possibly_damaging(0.889) TCGA-C5-A7X5-01 22 30700559 30700559 G A TBC1D10A Silent p.L97L 0.24 TCGA-C5-A7X5-01 22 30775719 30775724 CAGTGG - RNF215 In_Frame_Del p.P363_L364del 0.13 TCGA-C5-A7X5-01 22 50660907 50660907 G A TUBGCP6 Silent p.L795L 0.31 TCGA-C5-A7X5-01 22 50695537 50695537 C T MAPK12 Missense_Mutation p.V134M 0.40 deleterious(0.02) probably_damaging(0.993) TCGA-C5-A7X5-01 22 50962138 50962138 C T SCO2 Missense_Mutation p.G235S 0.39 deleterious(0.04) probably_damaging(1) TCGA-C5-A7X5-01 2 112550036 112550036 A G ANAPC1 Missense_Mutation p.C1539R 0.72 deleterious(0) probably_damaging(0.993) TCGA-C5-A7X5-01 2 113305075 113305075 G A POLR1B Silent p.V141V 0.10 TCGA-C5-A7X5-01 2 120725533 120725533 G T PTPN4 Missense_Mutation p.M893I 0.15 deleterious(0.01) benign(0.074) TCGA-C5-A7X5-01 2 141625189 141625189 G T LRP1B Missense_Mutation p.Q1517K 0.35 benign(0.002) TCGA-C5-A7X5-01 2 167328828 167328828 C G SCN7A Missense_Mutation p.E191Q 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-C5-A7X5-01 2 16742433 16742433 G A FAM49A Missense_Mutation p.S209F 0.20 deleterious(0) possibly_damaging(0.81) TCGA-C5-A7X5-01 2 168104633 168104633 C T XIRP2 Missense_Mutation p.T2244I 0.23 benign(0.023) TCGA-C5-A7X5-01 2 176983740 176983740 G A HOXD10 Silent p.K268K 0.19 TCGA-C5-A7X5-01 2 177502389 177502389 C T LINC01116 RNA 0.31 TCGA-C5-A7X5-01 2 191236062 191236062 G A INPP1 Silent p.R378R 0.31 TCGA-C5-A7X5-01 2 204735571 204735571 G A CTLA4 Silent p.T124T 0.30 TCGA-C5-A7X5-01 2 219553429 219553429 G T STK36 Missense_Mutation p.G464C 0.29 deleterious(0) possibly_damaging(0.886) TCGA-C5-A7X5-01 2 225337977 225337977 C T CUL3 3'UTR 0.25 TCGA-C5-A7X5-01 2 225422516 225422516 G C CUL3 Missense_Mutation p.Q42E 0.33 tolerated(0.13) benign(0.259) TCGA-C5-A7X5-01 2 239049953 239049953 C A KLHL30 Missense_Mutation p.D186E 0.24 tolerated(0.59) benign(0.019) TCGA-C5-A7X5-01 2 25057389 25057389 G A ADCY3 Silent p.L644L 0.25 TCGA-C5-A7X5-01 2 26531838 26531838 C G GPR113 3'Flank 0.23 TCGA-C5-A7X5-01 2 37296028 37296028 G A HEATR5B Missense_Mutation p.R325C 0.18 deleterious(0) probably_damaging(0.931) TCGA-C5-A7X5-01 2 50574018 50574018 C T NRXN1 Intron 0.50 TCGA-C5-A7X5-01 2 55126862 55126862 C T EML6 Missense_Mutation p.R1023C 0.16 deleterious(0) probably_damaging(0.996) TCGA-C5-A7X5-01 2 55463910 55463910 G A MTIF2 Silent p.V686V 0.44 TCGA-C5-A7X5-01 2 74141971 74141971 G A ACTG2 Missense_Mutation p.E260K 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-C5-A7X5-01 2 95537796 95537796 G A TEKT4 Missense_Mutation p.D158N 0.26 deleterious(0) probably_damaging(0.975) TCGA-C5-A7X5-01 3 10320618 10320618 C T TATDN2 Missense_Mutation p.T732M 0.35 deleterious(0) probably_damaging(0.998) TCGA-C5-A7X5-01 3 121190857 121190857 G A POLQ Missense_Mutation p.S2233L 0.34 deleterious(0) probably_damaging(0.996) TCGA-C5-A7X5-01 3 122296630 122296630 C T PARP15 Missense_Mutation p.A39V 0.25 tolerated_low_confidence(0.16) benign(0.01) TCGA-C5-A7X5-01 3 122487611 122487611 G A HSPBAP1 Silent p.F123F 0.20 TCGA-C5-A7X5-01 3 122628128 122628128 G C SEMA5B 3'Flank 0.37 TCGA-C5-A7X5-01 3 123663781 123663781 G A CCDC14 Missense_Mutation p.P427S 0.16 tolerated(0.09) probably_damaging(0.932) TCGA-C5-A7X5-01 3 123665738 123665738 C T CCDC14 Silent p.Q378Q 0.16 TCGA-C5-A7X5-01 3 131261579 131261579 C T CPNE4 Missense_Mutation p.R454Q 0.36 deleterious(0) probably_damaging(0.994) TCGA-C5-A7X5-01 3 178984711 178984711 C T KCNMB3 5'UTR 0.38 TCGA-C5-A7X5-01 3 183882174 183882174 C T DVL3 Silent p.F117F 0.16 TCGA-C5-A7X5-01 3 184045209 184045209 G A EIF4G1 Missense_Mutation p.E1219K 0.15 deleterious(0.02) benign(0.379) TCGA-C5-A7X5-01 3 195456565 195456565 G A MUC20 Silent p.P672P 0.08 TCGA-C5-A7X5-01 3 195511663 195511663 G A MUC4 Missense_Mutation p.S2263F 0.08 unknown(0) TCGA-C5-A7X5-01 3 195698225 195698225 C A SDHAP1 RNA 0.10 TCGA-C5-A7X5-01 3 3888664 3888664 G A LRRN1 3'UTR 0.34 TCGA-C5-A7X5-01 3 49759681 49759681 C T GMPPB Missense_Mutation p.V251M 0.42 tolerated(0.12) benign(0.094) TCGA-C5-A7X5-01 3 49759925 49759925 C T GMPPB Missense_Mutation p.E194K 0.38 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 3 49760725 49760725 C T GMPPB Missense_Mutation p.R74Q 0.56 tolerated(0.1) benign(0.009) TCGA-C5-A7X5-01 3 52097126 52097126 G A LINC00696 Nonsense_Mutation p.Q148* 0.56 TCGA-C5-A7X5-01 4 106163682 106163682 T G TET2 Intron 0.60 TCGA-C5-A7X5-01 4 139163027 139163027 G A SLC7A11 Missense_Mutation p.P66L 0.47 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 4 141888780 141888780 G A RNF150 Silent p.N244N 0.40 TCGA-C5-A7X5-01 4 154533484 154533484 G A KIAA0922 Missense_Mutation p.E1167K 0.39 deleterious(0.05) possibly_damaging(0.476) TCGA-C5-A7X5-01 4 159589286 159589286 G A C4orf46 3'UTR 0.32 TCGA-C5-A7X5-01 4 170429972 170429972 C T NEK1 Missense_Mutation p.G566E 0.46 deleterious(0.01) benign(0.422) TCGA-C5-A7X5-01 4 174223261 174223261 C T GALNT7 Silent p.L404L 0.11 TCGA-C5-A7X5-01 4 175897024 175897024 C T ADAM29 Silent p.L116L 0.35 TCGA-C5-A7X5-01 4 184182532 184182532 G A WWC2 Missense_Mutation p.E586K 0.41 deleterious(0.04) benign(0.362) TCGA-C5-A7X5-01 4 184368632 184368632 G T CDKN2AIP 3'UTR 0.47 TCGA-C5-A7X5-01 4 40104726 40104726 C T N4BP2 Nonsense_Mutation p.Q421* 0.42 TCGA-C5-A7X5-01 5 118569088 118569088 C G DMXL1 Missense_Mutation p.Q2777E 0.20 deleterious(0) benign(0.44) TCGA-C5-A7X5-01 5 122881259 122881259 C G CSNK1G3 5'UTR 0.11 TCGA-C5-A7X5-01 5 140233517 140233517 G T PCDHA9 Intron 0.42 TCGA-C5-A7X5-01 5 140248923 140248923 C G PCDHA11 Missense_Mutation p.L79V 0.08 tolerated_low_confidence(0.12) benign(0.259) TCGA-C5-A7X5-01 5 140754639 140754639 G C PCDHGA6 Missense_Mutation p.R330T 0.16 tolerated_low_confidence(0.16) benign(0.05) TCGA-C5-A7X5-01 5 140754773 140754773 G C PCDHGA6 Missense_Mutation p.D375H 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-C5-A7X5-01 5 140793585 140793585 G A PCDHGA10 Silent p.V281V 0.31 TCGA-C5-A7X5-01 5 140793977 140793977 G C PCDHGA10 Missense_Mutation p.R412T 0.19 tolerated_low_confidence(0.3) benign(0.016) TCGA-C5-A7X5-01 5 140865434 140865434 G A PCDHGC4 Missense_Mutation p.V232M 0.22 deleterious(0) probably_damaging(0.999) TCGA-C5-A7X5-01 5 146770950 146770950 C G DPYSL3 3'UTR 0.19 TCGA-C5-A7X5-01 5 148521498 148521498 G C ABLIM3 5'UTR 0.22 TCGA-C5-A7X5-01 5 149754655 149754655 G A TCOF1 Missense_Mutation p.E473K 0.20 tolerated(0.11) probably_damaging(0.973) TCGA-C5-A7X5-01 5 149755040 149755040 G A TCOF1 Missense_Mutation p.E543K 0.17 tolerated(0.24) benign(0.042) TCGA-C5-A7X5-01 5 149755064 149755064 G A TCOF1 Missense_Mutation p.E551K 0.22 tolerated(0.05) benign(0.058) TCGA-C5-A7X5-01 5 150932748 150932748 G A FAT2 Silent p.F1382F 0.19 TCGA-C5-A7X5-01 5 175774606 175774606 G C KIAA1191 Missense_Mutation p.F305L 0.16 deleterious(0.02) benign(0.23) TCGA-C5-A7X5-01 5 176778487 176778487 G C LMAN2 Silent p.L54L 0.18 TCGA-C5-A7X5-01 5 176778580 176778580 G C LMAN2 Silent p.L23L 0.13 TCGA-C5-A7X5-01 5 180482441 180482441 C T BTNL9 Nonsense_Mutation p.Q306* 0.40 TCGA-C5-A7X5-01 5 33951646 33951646 G C SLC45A2 Intron 0.27 TCGA-C5-A7X5-01 5 35921206 35921206 C T CAPSL Missense_Mutation p.R6H 0.27 deleterious(0) probably_damaging(0.96) TCGA-C5-A7X5-01 5 38406296 38406296 G A EGFLAM Missense_Mutation p.D261N 0.21 deleterious_low_confidence(0.05) benign(0.12) TCGA-C5-A7X5-01 5 50679368 50679368 G A ISL1 5'UTR 0.30 TCGA-C5-A7X5-01 5 6374481 6374481 G A MED10 Silent p.L89L 0.31 TCGA-C5-A7X5-01 5 66480130 66480130 G A CD180 Nonsense_Mutation p.Q181* 0.34 TCGA-C5-A7X5-01 5 80381681 80381681 G T RASGRF2 Nonsense_Mutation p.E408* 0.19 TCGA-C5-A7X5-01 5 82833272 82833272 G A VCAN Missense_Mutation p.E1484K 0.28 deleterious(0.02) possibly_damaging(0.804) TCGA-C5-A7X5-01 5 94022306 94022306 C G ANKRD32 Missense_Mutation p.F668L 0.24 tolerated(0.09) benign(0.326) TCGA-C5-A7X5-01 5 98229134 98229134 G A CHD1 Silent p.F659F 0.39 TCGA-C5-A7X5-01 6 105606535 105606535 C A POPDC3 Missense_Mutation p.R229L 0.16 deleterious(0) probably_damaging(0.912) TCGA-C5-A7X5-01 6 107780327 107780327 C T PDSS2 Missense_Mutation p.E55K 0.33 deleterious(0) possibly_damaging(0.765) TCGA-C5-A7X5-01 6 152683324 152683324 G A SYNE1 Missense_Mutation p.T3427M 0.67 possibly_damaging(0.495) TCGA-C5-A7X5-01 6 155776209 155776209 C T NOX3 Missense_Mutation p.E35K 0.39 tolerated(0.22) benign(0.219) TCGA-C5-A7X5-01 6 163148748 163148748 G A PARK2 5'UTR 0.30 TCGA-C5-A7X5-01 6 25551252 25551252 C T LRRC16A Missense_Mutation p.R815C 0.34 tolerated(0.07) benign(0.049) TCGA-C5-A7X5-01 6 26027315 26027315 G C HIST1H4B Missense_Mutation p.R56G 0.27 deleterious(0) probably_damaging(0.997) TCGA-C5-A7X5-01 6 30691691 30691691 C T TUBB Silent p.L284L 0.30 TCGA-C5-A7X5-01 6 31084696 31084696 G A CDSN Silent p.I232I 0.33 TCGA-C5-A7X5-01 6 41704667 41704667 C T PGC Missense_Mutation p.G364R 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A7X5-01 6 41888555 41888555 C T MED20 Intron 0.71 TCGA-C5-A7X5-01 6 5109130 5109130 C T LYRM4 3'UTR 0.56 TCGA-C5-A7X5-01 6 70873248 70873248 G A COL19A1 Missense_Mutation p.R787K 0.30 tolerated(0.18) probably_damaging(0.997) TCGA-C5-A7X5-01 6 83835391 83835391 G A DOPEY1 Missense_Mutation p.G553E 0.27 tolerated(0.46) benign(0.003) TCGA-C5-A7X5-01 6 84865040 84865040 C T KIAA1009 Missense_Mutation p.E991K 0.25 deleterious(0) probably_damaging(0.999) TCGA-C5-A7X5-01 6 88367690 88367690 G T ORC3 Nonsense_Mutation p.E550* 0.23 TCGA-C5-A7X5-01 6 88385319 88385319 G T AKIRIN2 Nonsense_Mutation p.S203* 0.21 TCGA-C5-A7X5-01 7 100680027 100680027 G A MUC17 Missense_Mutation p.S1777N 0.38 possibly_damaging(0.833) TCGA-C5-A7X5-01 7 107217859 107217859 G A DUS4L Missense_Mutation p.E270K 0.42 tolerated(0.39) benign(0.119) TCGA-C5-A7X5-01 7 110303666 110303666 C G IMMP2L Missense_Mutation p.E174Q 0.50 tolerated(0.11) benign(0.002) TCGA-C5-A7X5-01 7 116437010 116437010 G A MET 3'Flank 0.52 TCGA-C5-A7X5-01 7 131187766 131187766 C T PODXL 3'Flank 0.31 TCGA-C5-A7X5-01 7 131883388 131883388 G A PLXNA4 Missense_Mutation p.P865L 0.43 deleterious(0.03) probably_damaging(1) TCGA-C5-A7X5-01 7 150163848 150163848 C T GIMAP8 Missense_Mutation p.S21L 0.47 deleterious(0.01) benign(0.352) TCGA-C5-A7X5-01 7 150706129 150706129 G A NOS3 Missense_Mutation p.E742K 0.49 tolerated(0.28) benign(0.003) TCGA-C5-A7X5-01 7 150878066 150878066 T A ASB10 Missense_Mutation p.N355I 0.31 deleterious(0) probably_damaging(0.998) TCGA-C5-A7X5-01 7 152345566 152345566 G A XRCC2 3'UTR 0.43 TCGA-C5-A7X5-01 7 43917286 43917286 C G URGCP Silent p.L592L 0.78 TCGA-C5-A7X5-01 7 43917580 43917580 C T URGCP Silent p.L494L 0.69 TCGA-C5-A7X5-01 7 51096678 51096678 G C COBL Silent p.L705L 0.79 TCGA-C5-A7X5-01 7 65157772 65157772 G T INTS4L2 RNA 0.11 TCGA-C5-A7X5-01 7 66237003 66237003 G A RABGEF1 Nonsense_Mutation p.W39* 0.22 TCGA-C5-A7X5-01 7 74005205 74005205 G A GTF2IRD1 Missense_Mutation p.R849Q 0.25 tolerated(0.07) possibly_damaging(0.605) TCGA-C5-A7X5-01 7 77240143 77240143 C T PTPN12 Missense_Mutation p.S275F 0.25 deleterious(0) benign(0.386) TCGA-C5-A7X5-01 7 87073017 87073017 C T ABCB4 Missense_Mutation p.D398N 0.60 tolerated(1) benign(0) TCGA-C5-A7X5-01 7 95820485 95820485 C T SLC25A13 Missense_Mutation p.M230I 0.27 tolerated(0.09) benign(0.134) TCGA-C5-A7X5-01 7 99668281 99668281 G A ZNF3 3'UTR 0.11 TCGA-C5-A7X5-01 8 130789628 130789628 C T GSDMC Missense_Mutation p.S69N 0.19 tolerated(0.39) benign(0.214) TCGA-C5-A7X5-01 8 130854030 130854030 T C FAM49B 3'UTR 0.50 TCGA-C5-A7X5-01 8 144898774 144898774 G A PUF60 Silent p.L532L 0.21 TCGA-C5-A7X5-01 8 3257019 3257019 C T CSMD1 Missense_Mutation p.G767R 0.47 probably_damaging(1) TCGA-C5-A7X5-01 8 57026157 57026157 C T MOS Missense_Mutation p.A129T 0.33 tolerated(0.16) possibly_damaging(0.686) TCGA-C5-A7X5-01 8 60033097 60033097 G A TOX 5'Flank 0.17 TCGA-C5-A7X5-01 8 97154727 97154727 G A GDF6 3'UTR 0.13 TCGA-C5-A7X5-01 9 103004881 103004881 G C INVS Missense_Mutation p.E276Q 0.43 deleterious(0.01) possibly_damaging(0.758) TCGA-C5-A7X5-01 9 124091166 124091166 C T GSN Intron 0.53 TCGA-C5-A7X5-01 9 124091177 124091177 T C GSN Missense_Mutation p.W642R 0.57 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 9 131388796 131388796 G A SPTAN1 Missense_Mutation p.E2136K 0.54 tolerated(0.6) benign(0.35) TCGA-C5-A7X5-01 9 131397416 131397416 G A WDR34 Silent p.F312F 0.68 TCGA-C5-A7X5-01 9 131398295 131398295 G C WDR34 Intron 0.50 TCGA-C5-A7X5-01 9 136266928 136266928 G A C9orf96 Silent p.L420L 0.47 TCGA-C5-A7X5-01 9 139848676 139848676 G A LCN12 Silent p.S173S 0.30 TCGA-C5-A7X5-01 9 139872090 139872090 G A PTGDS Silent p.L20L 0.31 TCGA-C5-A7X5-01 9 35381622 35381622 G A UNC13B Missense_Mutation p.D772N 0.41 deleterious(0.02) probably_damaging(0.987) TCGA-C5-A7X5-01 9 465138 465138 G A DOCK8 3'UTR 0.38 TCGA-C5-A7X5-01 9 5969019 5969019 A T KIAA2026 Missense_Mutation p.F404L 0.12 deleterious(0) probably_damaging(0.99) TCGA-C5-A7X5-01 X 114424211 114424211 G T RBMXL3 Missense_Mutation p.M69I 0.24 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-C5-A7X5-01 X 119387796 119387796 G A ZBTB33 Missense_Mutation p.E176K 0.37 tolerated(0.1) benign(0.004) TCGA-C5-A7X5-01 X 123480537 123480537 C T SH2D1A Silent p.T15T 0.23 TCGA-C5-A7X5-01 X 129272677 129272677 C T AIFM1 Splice_Site p.X287_splice 0.22 TCGA-C5-A7X5-01 X 135579740 135579740 G A HTATSF1 Intron 0.53 TCGA-C5-A7X5-01 X 152773751 152773751 G A BGN Missense_Mutation p.D319N 0.11 deleterious(0) probably_damaging(0.997) TCGA-C5-A7X5-01 X 23700578 23700578 G A PRDX4 Missense_Mutation p.G222D 0.22 deleterious(0) probably_damaging(1) TCGA-C5-A7X5-01 X 37027655 37027655 G A FAM47C Missense_Mutation p.R391H 0.20 tolerated(1) benign(0.005) TCGA-C5-A7X5-01 X 44008017 44008017 G A EFHC2 3'UTR 0.22 TCGA-C5-A7X5-01 X 47044456 47044456 T C RBM10 Silent p.I651I 0.44 TCGA-C5-A7X5-01 X 48371231 48371231 G A PORCN Missense_Mutation p.R232H 0.13 tolerated_low_confidence(0.16) benign(0.012) TCGA-C5-A7X5-01 X 48687784 48687784 T G ERAS Missense_Mutation p.L84R 0.17 deleterious(0.03) benign(0.299) TCGA-C5-A7X5-01 X 48849943 48849943 C T GRIPAP1 Silent p.K118K 0.24 TCGA-C5-A7X5-01 X 51150671 51150671 G A CXorf67 Missense_Mutation p.R268H 0.28 tolerated(0.18) possibly_damaging(0.476) TCGA-C5-A7X5-01 X 51638836 51638836 C T MAGED1 Missense_Mutation p.R301W 0.28 deleterious_low_confidence(0) unknown(0) TCGA-C5-A7X5-01 X 57619036 57619036 C T ZXDB Silent p.L185L 0.50 TCGA-C5-A7X5-01 X 79973252 79973252 C A BRWD3 Missense_Mutation p.R684I 0.25 tolerated(0.06) benign(0.045) TCGA-C5-A7X8-01 10 120070718 120070718 C A FAM204A Splice_Site p.X217_splice 0.32 TCGA-C5-A7X8-01 10 35299259 35299259 C T CUL2 Missense_Mutation p.E759K 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-C5-A7X8-01 10 37422965 37422965 A G ANKRD30A Missense_Mutation p.T191A 0.23 tolerated(0.91) benign(0.002) TCGA-C5-A7X8-01 10 60573704 60573704 G A BICC1 Missense_Mutation p.A831T 0.39 tolerated(0.46) benign(0.001) TCGA-C5-A7X8-01 11 45869064 45869064 C T CRY2 Missense_Mutation p.A29V 0.55 tolerated_low_confidence(1) unknown(0) TCGA-C5-A7X8-01 11 57156101 57156101 G A PRG2 Silent p.V149V 0.26 TCGA-C5-A7X8-01 11 85447655 85447655 T A SYTL2 Missense_Mutation p.R158W 0.35 deleterious(0) probably_damaging(0.999) TCGA-C5-A7X8-01 12 13716215 13716215 C T GRIN2B Silent p.P1319P 0.52 TCGA-C5-A7X8-01 12 49999273 49999273 T A FAM186B 5'UTR 0.06 TCGA-C5-A7X8-01 12 51323721 51323721 C A METTL7A Missense_Mutation p.H175N 0.27 deleterious(0) probably_damaging(0.979) TCGA-C5-A7X8-01 12 80632707 80632707 C T OTOGL Silent p.L289L 0.27 TCGA-C5-A7X8-01 13 20716989 20716989 G A GJA3 Missense_Mutation p.R147W 0.05 deleterious(0) probably_damaging(0.998) TCGA-C5-A7X8-01 14 20296324 20296324 G A OR4N2 Silent p.T239T 0.16 TCGA-C5-A7X8-01 14 22459033 22459033 G A TRAV16 Missense_Mutation p.R62H 0.45 deleterious(0.02) benign(0.007) TCGA-C5-A7X8-01 14 33242972 33242972 G C AKAP6 Missense_Mutation p.C1154S 0.06 tolerated(0.11) probably_damaging(0.998) TCGA-C5-A7X8-01 14 47310553 47310553 G A MDGA2 3'UTR 0.16 TCGA-C5-A7X8-01 14 60587942 60587942 G C PCNXL4 Missense_Mutation p.L423F 0.17 deleterious(0) probably_damaging(1) TCGA-C5-A7X8-01 14 71578713 71578713 T C PCNX 3'UTR 0.45 TCGA-C5-A7X8-01 14 92088049 92088049 C G CATSPERB Missense_Mutation p.W721C 0.45 deleterious(0.02) probably_damaging(0.912) TCGA-C5-A7X8-01 14 99639839 99639839 G A BCL11B 3'UTR 0.37 TCGA-C5-A7X8-01 15 22383378 22383378 G A OR4N4 Silent p.L302L 0.15 TCGA-C5-A7X8-01 15 41827041 41827041 C T RPAP1 Missense_Mutation p.G212R 0.18 deleterious(0) probably_damaging(0.957) TCGA-C5-A7X8-01 15 44884629 44884629 G T SPG11 Missense_Mutation p.P1548Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-C5-A7X8-01 15 90171909 90171911 GCC A KIF7 Frame_Shift_Del p.A1258Pfs*27 0.42 TCGA-C5-A7X8-01 15 93447662 93447662 G C CHD2 Intron 0.53 TCGA-C5-A7X8-01 16 19080050 19080050 C T COQ7 Intron 0.48 TCGA-C5-A7X8-01 16 22237142 22237142 G A EEF2K Missense_Mutation p.S31N 0.21 tolerated_low_confidence(0.14) benign(0.309) TCGA-C5-A7X8-01 16 2757757 2757757 C T KCTD5 3'UTR 0.20 TCGA-C5-A7X8-01 16 2979719 2979719 C T FLYWCH1 Silent p.G11G 0.26 TCGA-C5-A7X8-01 16 4950995 4950995 G A PPL Silent p.I178I 0.09 TCGA-C5-A7X8-01 16 50367504 50367504 C G BRD7 Missense_Mutation p.R331T 0.10 tolerated(0.17) probably_damaging(0.951) TCGA-C5-A7X8-01 16 88504690 88504690 G A ZNF469 Silent p.P3576P 0.16 TCGA-C5-A7X8-01 17 10247175 10247175 C A MYH13 Missense_Mutation p.Q612H 0.27 deleterious(0) probably_damaging(0.993) TCGA-C5-A7X8-01 17 40344400 40344420 CCCGTGGCCCCTGCTCTAGGG - GHDC In_Frame_Del p.A243_R249del 0.29 TCGA-C5-A7X8-01 17 46620416 46620416 G A HOXB2 3'UTR 0.75 TCGA-C5-A7X8-01 17 61831858 61831858 G A CCDC47 Silent p.H323H 0.52 TCGA-C5-A7X8-01 17 7401520 7401520 C T POLR2A Silent p.T442T 0.66 TCGA-C5-A7X8-01 18 43704823 43704823 G A HAUS1 Silent p.L234L 0.27 TCGA-C5-A7X8-01 19 18376508 18376508 C T KIAA1683 Silent p.A614A 0.44 TCGA-C5-A7X8-01 19 34890878 34890878 C T GPI Silent p.H549H 0.48 TCGA-C5-A7X8-01 19 37440638 37440638 G C ZNF568 Missense_Mutation p.E195Q 0.32 tolerated(1) benign(0.001) TCGA-C5-A7X8-01 19 43382234 43382234 T A PSG1 Missense_Mutation p.E87D 0.06 deleterious(0.05) benign(0.003) TCGA-C5-A7X8-01 19 50926966 50926966 G A SPIB Silent p.S148S 0.58 TCGA-C5-A7X8-01 19 6002729 6002729 C T RFX2 Intron 0.53 TCGA-C5-A7X8-01 1 155899523 155899523 G C KIAA0907 Missense_Mutation p.R122G 0.26 deleterious(0) probably_damaging(0.996) TCGA-C5-A7X8-01 1 158065190 158065190 G A KIRREL 3'UTR 0.44 TCGA-C5-A7X8-01 1 16577034 16577034 G A FBXO42 3'UTR 0.37 TCGA-C5-A7X8-01 1 16577604 16577604 G A FBXO42 Missense_Mutation p.S572L 0.40 deleterious_low_confidence(0.03) benign(0.037) TCGA-C5-A7X8-01 1 16577926 16577926 G C FBXO42 Missense_Mutation p.P465A 0.43 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-C5-A7X8-01 1 197094319 197094319 C T ASPM Missense_Mutation p.R980Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-C5-A7X8-01 1 201772727 201772727 G A NAV1 Missense_Mutation p.R1175Q 0.49 tolerated(0.06) benign(0.212) TCGA-C5-A7X8-01 1 28150300 28150300 G A STX12 3'UTR 0.46 TCGA-C5-A7X8-01 1 36202115 36202115 G C CLSPN Missense_Mutation p.F1334L 0.40 deleterious(0) probably_damaging(0.997) TCGA-C5-A7X8-01 1 39340075 39340075 G C GJA9 3'UTR 0.53 TCGA-C5-A7X8-01 1 93301752 93301752 C T RPL5 Silent p.L110L 0.56 TCGA-C5-A7X8-01 20 20180426 20180426 C T C20orf26 Silent p.Y604Y 0.45 TCGA-C5-A7X8-01 20 48808928 48808928 G C CEBPB 3'UTR 0.32 TCGA-C5-A7X8-01 20 48808958 48808958 G A CEBPB 3'UTR 0.32 TCGA-C5-A7X8-01 21 30354669 30354669 T C LTN1 Missense_Mutation p.K246E 0.36 deleterious(0) probably_damaging(0.999) TCGA-C5-A7X8-01 21 45919682 45919682 C T TSPEAR Missense_Mutation p.R665Q 0.42 deleterious(0.01) benign(0.332) TCGA-C5-A7X8-01 2 202902019 202902019 C G FZD7 3'UTR 0.20 TCGA-C5-A7X8-01 2 233199427 233199427 G C DIS3L2 Missense_Mutation p.Q792H 0.55 deleterious(0.03) benign(0.013) TCGA-C5-A7X8-01 2 237276928 237276928 C T IQCA1 Silent p.L526L 0.30 TCGA-C5-A7X8-01 2 55252287 55252287 G A RTN4 Missense_Mutation p.S983F 0.46 deleterious(0.01) possibly_damaging(0.786) TCGA-C5-A7X8-01 2 55529152 55529152 C G CCDC88A Missense_Mutation p.E1509Q 0.45 deleterious(0.01) possibly_damaging(0.898) TCGA-C5-A7X8-01 2 69053523 69053523 C A ARHGAP25 3'UTR 0.46 TCGA-C5-A7X8-01 3 112546242 112546242 G A CD200R1L Silent p.F134F 0.06 TCGA-C5-A7X8-01 3 129289654 129289654 G A PLXND1 Missense_Mutation p.A1242V 0.21 tolerated(0.22) benign(0.001) TCGA-C5-A7X8-01 3 157188240 157188240 C T VEPH1 Missense_Mutation p.E73K 0.14 tolerated(0.53) benign(0.003) TCGA-C5-A7X8-01 3 164709202 164709202 G A SI Silent p.L1683L 0.29 TCGA-C5-A7X8-01 3 196669974 196669974 C T PIGZ 3'Flank 0.39 TCGA-C5-A7X8-01 3 49166168 49166168 G A LAMB2 Nonsense_Mutation p.Q606* 0.19 TCGA-C5-A7X8-01 3 52437826 52437826 G A BAP1 Silent p.I445I 0.81 TCGA-C5-A7X8-01 4 110606485 110606485 G A CCDC109B Missense_Mutation p.V299M 0.35 deleterious(0.03) benign(0.378) TCGA-C5-A7X8-01 4 114899748 114899748 G A ARSJ Silent p.I81I 0.32 TCGA-C5-A7X8-01 4 2067560 2067560 G A NAT8L 3'UTR 0.40 TCGA-C5-A7X8-01 4 6884391 6884391 G A KIAA0232 3'UTR 0.35 TCGA-C5-A7X8-01 5 139908133 139908133 C T ANKHD1 Missense_Mutation p.R1868W 0.09 probably_damaging(0.995) TCGA-C5-A7X8-01 5 35039593 35039593 G T AGXT2 Silent p.V66V 0.14 TCGA-C5-A7X8-01 6 110714266 110714266 C T DDO Silent p.P274P 0.13 TCGA-C5-A7X8-01 6 117114379 117114379 A T GPRC6A Silent p.T569T 0.22 TCGA-C5-A7X8-01 6 30303639 30303639 C G TRIM39 Missense_Mutation p.L223V 0.41 deleterious(0.01) probably_damaging(0.955) TCGA-C5-A7X8-01 6 31322439 31322439 C A HLA-B Missense_Mutation p.G339V 0.37 tolerated_low_confidence(0.15) probably_damaging(1) TCGA-C5-A7X8-01 6 31323001 31323001 C G HLA-B Splice_Site p.X299_splice 0.31 TCGA-C5-A7X8-01 6 47681673 47681673 C T GPR115 Missense_Mutation p.S231F 0.43 tolerated(0.06) benign(0.033) TCGA-C5-A7X8-01 6 47763144 47763144 C G OPN5 Missense_Mutation p.L201V 0.54 tolerated(0.28) benign(0.057) TCGA-C5-A7X8-01 6 47763194 47763194 C T OPN5 Silent p.F217F 0.44 TCGA-C5-A7X8-01 6 78172407 78172407 C A HTR1B Silent p.R238R 0.58 TCGA-C5-A7X8-01 7 31877578 31877578 G A PDE1C Nonsense_Mutation p.R390* 0.25 TCGA-C5-A7X8-01 7 37947105 37947105 C G SFRP4 Missense_Mutation p.K339N 0.48 deleterious_low_confidence(0) benign(0.327) TCGA-C5-A7X8-01 7 73096709 73096709 C T DNAJC30 3'UTR 0.32 TCGA-C5-A7X8-01 7 80457914 80457914 T G SEMA3C Missense_Mutation p.Q84P 0.20 deleterious(0) possibly_damaging(0.773) TCGA-C5-A7X8-01 7 92158861 92158861 A G RBM48 Silent p.E61E 0.52 TCGA-C5-A7X8-01 7 95749955 95749955 G A SLC25A13 3'UTR 0.52 TCGA-C5-A7X8-01 7 99672831 99672831 C T ZNF3 Silent p.K66K 0.51 TCGA-C5-A7X8-01 8 11163733 11163734 - A MTMR9 Frame_Shift_Ins p.N210Kfs*26 0.18 TCGA-C5-A7X8-01 8 125499222 125499222 C A RNF139 Missense_Mutation p.F444L 0.32 deleterious(0.05) possibly_damaging(0.893) TCGA-C5-A7X8-01 8 125499540 125499540 C T RNF139 Silent p.C550C 0.38 TCGA-C5-A7X8-01 8 125499560 125499560 C T RNF139 Missense_Mutation p.S557F 0.27 deleterious(0) possibly_damaging(0.9) TCGA-C5-A7X8-01 8 141561493 141561493 G A AGO2 Missense_Mutation p.R438W 0.05 deleterious(0) benign(0.26) TCGA-C5-A7X8-01 8 23708895 23708895 G A STC1 Silent p.I137I 0.05 TCGA-C5-A7X8-01 9 15744398 15744398 C T CCDC171 Missense_Mutation p.S726F 0.39 deleterious(0) possibly_damaging(0.82) TCGA-C5-A7X8-01 X 103495144 103495144 C G ESX1 Missense_Mutation p.R329P 0.17 tolerated_low_confidence(0.17) unknown(0) TCGA-C5-A7X8-01 X 125298938 125298938 C T DCAF12L2 Missense_Mutation p.G324S 0.20 deleterious(0) probably_damaging(0.976) TCGA-C5-A7X8-01 X 134232417 134232417 C T LINC00087 RNA 0.30 TCGA-C5-A7X8-01 X 154133083 154133083 T C F8 Intron 0.29 TCGA-C5-A7X8-01 X 18842163 18842163 T C PPEF1 Missense_Mutation p.S542P 0.05 deleterious(0.01) probably_damaging(0.939) TCGA-C5-A7X8-01 X 18936947 18936947 A G PHKA2 Silent p.Y663Y 0.32 TCGA-C5-A7X8-01 X 31496308 31496308 C T DMD Missense_Mutation p.R2951H 0.21 possibly_damaging(0.715) TCGA-C5-A7X8-01 X 47041692 47041692 G A RBM10 Silent p.K639K 0.22 TCGA-C5-A7XC-01 10 102684466 102684466 G A FAM178A Missense_Mutation p.A570T 0.22 tolerated(0.88) benign(0.002) TCGA-C5-A7XC-01 10 125506287 125506287 C T CPXM2 Missense_Mutation p.R755H 0.22 tolerated_low_confidence(0.07) unknown(0) TCGA-C5-A7XC-01 10 51821277 51821277 G A RP11-324H6.5 RNA 0.26 TCGA-C5-A7XC-01 10 85974303 85974303 G A CDHR1 Missense_Mutation p.V836I 0.09 tolerated_low_confidence(0.66) benign(0.002) TCGA-C5-A7XC-01 10 86133732 86133732 T A CCSER2 Intron 0.20 TCGA-C5-A7XC-01 11 65998386 65998386 C T PACS1 Missense_Mutation p.S534F 0.12 deleterious(0.04) probably_damaging(0.951) TCGA-C5-A7XC-01 12 104134471 104134471 C T STAB2 Missense_Mutation p.R1940W 0.09 deleterious(0.02) benign(0.001) TCGA-C5-A7XC-01 12 109577325 109577325 G A ACACB Missense_Mutation p.A39T 0.36 tolerated_low_confidence(0.43) benign(0.002) TCGA-C5-A7XC-01 12 113730871 113730871 G A TPCN1 Missense_Mutation p.R821K 0.15 tolerated(0.86) benign(0.003) TCGA-C5-A7XC-01 12 122989689 122989689 C T RSRC2 3'UTR 0.32 TCGA-C5-A7XC-01 12 125397940 125397940 C T UBC Silent p.L126L 0.11 TCGA-C5-A7XC-01 12 40916892 40916892 C T MUC19 Intron 0.28 TCGA-C5-A7XC-01 12 57492582 57492582 C A STAT6 Missense_Mutation p.D687Y 0.18 deleterious(0.03) possibly_damaging(0.629) TCGA-C5-A7XC-01 12 7362432 7362432 C T PEX5 Missense_Mutation p.H587Y 0.23 tolerated(0.43) possibly_damaging(0.455) TCGA-C5-A7XC-01 13 103281938 103281938 G A TPP2 Missense_Mutation p.G375R 0.39 deleterious(0.01) probably_damaging(1) TCGA-C5-A7XC-01 13 21063529 21063529 C T CRYL1 Missense_Mutation p.E86K 0.10 deleterious_low_confidence(0) possibly_damaging(0.822) TCGA-C5-A7XC-01 13 28877063 28877063 C G FLT1 3'UTR 0.24 TCGA-C5-A7XC-01 13 52515311 52515311 C T ATP7B Silent p.L1154L 0.22 TCGA-C5-A7XC-01 13 96547480 96547480 C G UGGT2 Missense_Mutation p.E905Q 0.10 tolerated(0.31) benign(0.025) TCGA-C5-A7XC-01 13 96684188 96684188 G A UGGT2 Nonsense_Mutation p.Q66* 0.07 TCGA-C5-A7XC-01 14 21811317 21811317 G A RPGRIP1 Silent p.S1154S 0.20 TCGA-C5-A7XC-01 14 24792658 24792658 G C ADCY4 Missense_Mutation p.F683L 0.17 tolerated(0.6) benign(0.002) TCGA-C5-A7XC-01 14 44973999 44973999 A G FSCB Missense_Mutation p.I731T 0.30 deleterious(0.02) unknown(0) TCGA-C5-A7XC-01 14 64882149 64882149 C T MTHFD1 Missense_Mutation p.S105L 0.14 deleterious(0.01) possibly_damaging(0.759) TCGA-C5-A7XC-01 14 71580236 71580236 A G PCNX 3'UTR 0.29 TCGA-C5-A7XC-01 14 76437949 76437949 C T TGFB3 Silent p.R155R 0.18 TCGA-C5-A7XC-01 14 76437994 76437994 C G TGFB3 Missense_Mutation p.E140D 0.12 tolerated(0.2) probably_damaging(0.996) TCGA-C5-A7XC-01 15 100252929 100252929 G C MEF2A Missense_Mutation p.E485Q 0.09 tolerated(0.06) benign(0.347) TCGA-C5-A7XC-01 15 25616267 25616267 C T UBE3A Missense_Mutation p.E355K 0.10 tolerated(0.15) benign(0.066) TCGA-C5-A7XC-01 15 41064262 41064264 GAG - C15orf62 3'UTR 0.26 TCGA-C5-A7XC-01 15 41829293 41829293 C T RPAP1 Missense_Mutation p.E11K 0.27 deleterious(0) probably_damaging(0.997) TCGA-C5-A7XC-01 15 75248543 75248543 C G RPP25 Missense_Mutation p.V128L 0.46 deleterious(0.04) probably_damaging(0.964) TCGA-C5-A7XC-01 15 75593341 75593341 C T DNM1P34 RNA 0.35 TCGA-C5-A7XC-01 15 81224300 81224300 G T KIAA1199 Missense_Mutation p.A905S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A7XC-01 15 90168308 90168308 C T TICRR Silent p.L1589L 0.26 TCGA-C5-A7XC-01 15 91448954 91448954 G T MAN2A2 Splice_Site p.X179_splice 0.26 TCGA-C5-A7XC-01 16 21060956 21060956 C T DNAH3 Silent p.G1465G 0.18 TCGA-C5-A7XC-01 16 22558178 22558178 G A RP11-368J21.3 RNA 0.19 TCGA-C5-A7XC-01 16 70299549 70299549 G A AARS Silent p.L413L 0.05 TCGA-C5-A7XC-01 16 88017833 88017833 C T BANP Silent p.L102L 0.09 TCGA-C5-A7XC-01 17 33770832 33770832 C A SLFN13 Missense_Mutation p.D392Y 0.11 deleterious(0) possibly_damaging(0.595) TCGA-C5-A7XC-01 17 34191884 34191884 C G C17orf66 Missense_Mutation p.E111Q 0.04 tolerated(0.09) benign(0.025) TCGA-C5-A7XC-01 17 40837128 40837128 G C CNTNAP1 Silent p.L161L 0.09 TCGA-C5-A7XC-01 17 40951222 40951222 G T CNTD1 Missense_Mutation p.R46L 0.19 tolerated(0.62) benign(0.024) TCGA-C5-A7XC-01 17 456667 456667 A G VPS53 Silent p.S580S 0.39 TCGA-C5-A7XC-01 17 45924951 45924951 C T SP6 Missense_Mutation p.R282H 0.22 deleterious(0) probably_damaging(0.998) TCGA-C5-A7XC-01 17 46005924 46005924 G A SP2 3'UTR 0.11 TCGA-C5-A7XC-01 17 4844031 4844031 C G RNF167 5'UTR 0.17 TCGA-C5-A7XC-01 17 65184438 65184438 C T HELZ Missense_Mutation p.E387K 0.08 tolerated(0.07) benign(0.118) TCGA-C5-A7XC-01 17 8063821 8063821 G T VAMP2 3'UTR 0.30 TCGA-C5-A7XC-01 19 14185451 14185451 C T hsa-mir-1199 Intron 0.12 TCGA-C5-A7XC-01 19 14185500 14185500 C T hsa-mir-1199 Intron 0.11 TCGA-C5-A7XC-01 19 14202536 14202536 C G PRKACA 3'UTR 0.05 TCGA-C5-A7XC-01 19 15566949 15566949 C T RASAL3 Missense_Mutation p.E563K 0.08 tolerated(0.08) benign(0.056) TCGA-C5-A7XC-01 19 16145515 16145515 C T LINC00905 RNA 0.22 TCGA-C5-A7XC-01 19 17435976 17435976 C T ANO8 Missense_Mutation p.E961K 0.18 deleterious(0.01) unknown(0) TCGA-C5-A7XC-01 19 21991154 21991154 C G ZNF43 Missense_Mutation p.G562A 0.20 deleterious(0.01) possibly_damaging(0.857) TCGA-C5-A7XC-01 19 36239529 36239529 C T LIN37 5'UTR 0.23 TCGA-C5-A7XC-01 19 36335009 36335009 C T NPHS1 Silent p.V736V 0.43 TCGA-C5-A7XC-01 19 44891477 44891477 G A ZNF285 Silent p.S310S 0.10 TCGA-C5-A7XC-01 19 45867344 45867344 G A ERCC2 Silent p.D283D 0.50 TCGA-C5-A7XC-01 19 5111865 5111865 C T KDM4B Intron 0.19 TCGA-C5-A7XC-01 19 9069363 9069363 G A MUC16 Missense_Mutation p.S6028F 0.06 unknown(0) TCGA-C5-A7XC-01 1 109817191 109817191 C T CELSR2 3'UTR 0.09 TCGA-C5-A7XC-01 1 204590328 204590328 C A LRRN2 5'UTR 0.09 TCGA-C5-A7XC-01 1 205389616 205389616 C A LEMD1 Nonsense_Mutation p.E17* 0.23 TCGA-C5-A7XC-01 1 22176603 22176603 G A HSPG2 Silent p.L2459L 0.38 TCGA-C5-A7XC-01 1 24128749 24128749 C A HMGCL 3'UTR 0.14 TCGA-C5-A7XC-01 1 24408595 24408595 G T MYOM3 Missense_Mutation p.R726S 0.15 tolerated(1) benign(0.175) TCGA-C5-A7XC-01 1 9324085 9324085 G C H6PD Missense_Mutation p.L511F 0.09 deleterious(0) probably_damaging(1) TCGA-C5-A7XC-01 20 33012294 33012294 C A ITCH Missense_Mutation p.Q203K 0.10 tolerated(0.95) benign(0.001) TCGA-C5-A7XC-01 20 45174400 45174400 G C OCSTAMP Missense_Mutation p.Q205E 0.08 tolerated(0.52) benign(0.015) TCGA-C5-A7XC-01 20 5930968 5930968 C T TRMT6 Silent p.L28L 0.09 TCGA-C5-A7XC-01 20 61542885 61542885 C A DIDO1 Missense_Mutation p.W27L 0.13 probably_damaging(0.998) TCGA-C5-A7XC-01 22 18032555 18032555 G C CECR2 3'UTR 0.06 TCGA-C5-A7XC-01 22 50644926 50644926 G A SELO Silent p.L245L 0.15 TCGA-C5-A7XC-01 2 168110541 168110541 G A XIRP2 Splice_Site p.X3519_splice 0.09 TCGA-C5-A7XC-01 2 179467189 179467189 C T TTN Missense_Mutation p.E18314K 0.31 TCGA-C5-A7XC-01 2 225698901 225698901 G C DOCK10 Nonsense_Mutation p.S977* 0.08 TCGA-C5-A7XC-01 2 25384180 25384180 C T POMC Missense_Mutation p.D192N 0.09 deleterious(0.04) benign(0.125) TCGA-C5-A7XC-01 2 26707419 26707419 G A OTOF Silent p.D376D 0.22 TCGA-C5-A7XC-01 2 31567568 31567568 G C XDH Missense_Mutation p.S1129C 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-C5-A7XC-01 2 46386838 46386838 G C PRKCE Missense_Mutation p.D672H 0.07 deleterious(0.01) possibly_damaging(0.814) TCGA-C5-A7XC-01 2 87012953 87012953 G A CD8A 3'UTR 0.14 TCGA-C5-A7XC-01 2 9588351 9588351 G A CPSF3 Missense_Mutation p.E423K 0.17 deleterious(0.05) possibly_damaging(0.789) TCGA-C5-A7XC-01 3 133547327 133547327 C T RAB6B 3'UTR 0.07 TCGA-C5-A7XC-01 3 133647231 133647231 G C C3orf36 Missense_Mutation p.F139L 0.06 tolerated_low_confidence(0.44) benign(0.294) TCGA-C5-A7XC-01 3 13672280 13672280 G C FBLN2 Missense_Mutation p.G1017A 0.34 deleterious(0) probably_damaging(0.991) TCGA-C5-A7XC-01 3 151156049 151156049 G C IGSF10 Missense_Mutation p.N2100K 0.18 deleterious(0.04) benign(0.21) TCGA-C5-A7XC-01 3 164777689 164777689 C A SI Splice_Site p.X382_splice 0.18 TCGA-C5-A7XC-01 3 184025147 184025147 G A PSMD2 Silent p.L679L 0.17 TCGA-C5-A7XC-01 3 44540925 44540925 G A ZNF852 Silent p.F448F 0.06 TCGA-C5-A7XC-01 3 52555012 52555012 G A STAB1 Missense_Mutation p.E1967K 0.24 deleterious(0.03) benign(0.211) TCGA-C5-A7XC-01 4 100434320 100434320 C G C4orf17 Missense_Mutation p.L28V 0.33 deleterious(0.01) possibly_damaging(0.557) TCGA-C5-A7XC-01 4 104103947 104103947 G A CENPE Missense_Mutation p.S312F 0.05 probably_damaging(0.999) TCGA-C5-A7XC-01 4 153245513 153245513 C G FBXW7 Missense_Mutation p.D560H 0.37 deleterious(0) probably_damaging(0.999) TCGA-C5-A7XC-01 4 82064058 82064058 C T PRKG2 Missense_Mutation p.E433K 0.05 tolerated(0.12) benign(0.33) TCGA-C5-A7XC-01 5 314595 314595 G A PDCD6 Missense_Mutation p.E181K 0.11 deleterious(0) probably_damaging(0.981) TCGA-C5-A7XC-01 5 31468126 31468126 G C DROSHA Missense_Mutation p.F762L 0.31 tolerated(0.37) benign(0.008) TCGA-C5-A7XC-01 6 144795889 144795889 C T UTRN Silent p.S1110S 0.27 TCGA-C5-A7XC-01 6 161132116 161132116 C G PLG Silent p.L100L 0.36 TCGA-C5-A7XC-01 7 102087172 102087172 C T ORAI2 Silent p.I146I 0.29 TCGA-C5-A7XC-01 7 104546961 104546961 A T LHFPL3 3'UTR 0.06 TCGA-C5-A7XC-01 7 38424116 38424116 G C AMPH 3'UTR 0.20 TCGA-C5-A7XC-01 9 100234591 100234591 C T TDRD7 Silent p.S586S 0.37 TCGA-C5-A7XC-01 9 120470986 120470986 T C TLR4 Missense_Mutation p.L80P 0.23 deleterious(0) probably_damaging(1) TCGA-C5-A7XC-01 9 74971943 74971943 G T ZFAND5 Missense_Mutation p.Q133K 0.28 tolerated(0.54) benign(0.004) TCGA-C5-A7XC-01 9 90318024 90318024 G A DAPK1 Silent p.Q984Q 0.15 TCGA-C5-A7XC-01 X 147030416 147030416 C A FMR1 3'UTR 0.20 TCGA-C5-A7XC-01 X 154490108 154490108 C T RAB39B Missense_Mutation p.E208K 0.07 tolerated(0.63) benign(0) TCGA-C5-A7XC-01 X 18660141 18660141 C T RS1 Missense_Mutation p.V220I 0.20 deleterious_low_confidence(0.05) benign(0.005) TCGA-C5-A7XC-01 X 38547783 38547783 G A TSPAN7 3'UTR 0.11 TCGA-C5-A7XC-01 X 40541123 40541123 C T MED14 Missense_Mutation p.G813E 0.05 deleterious(0) probably_damaging(1) TCGA-C5-A7XC-01 X 54162981 54162981 C T FAM120C Missense_Mutation p.E401K 0.09 deleterious(0.04) benign(0.298) TCGA-C5-A7XC-01 X 54496640 54496640 C T FGD1 Missense_Mutation p.G304R 0.32 deleterious(0.01) benign(0.049) TCGA-C5-A7XC-01 X 74280164 74280164 G A ABCB7 Missense_Mutation p.T647I 0.13 tolerated(0.06) benign(0.005) TCGA-C5-A8XH-01 10 113924334 113924334 G C GPAM Missense_Mutation p.S419C 0.30 deleterious(0.02) benign(0.198) TCGA-C5-A8XH-01 10 15254228 15254228 G A FAM171A1 3'UTR 0.12 TCGA-C5-A8XH-01 10 16554935 16554935 A C PTER 3'UTR 0.09 TCGA-C5-A8XH-01 10 19856617 19856617 G T MALRD1 Nonsense_Mutation p.E1268* 0.34 TCGA-C5-A8XH-01 10 26802524 26802524 G C APBB1IP Missense_Mutation p.D250H 0.12 tolerated(0.07) possibly_damaging(0.78) TCGA-C5-A8XH-01 10 32304479 32304479 C G KIF5B Missense_Mutation p.G957A 0.29 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-C5-A8XH-01 10 46962056 46962056 C T SYT15 Missense_Mutation p.E394K 0.12 deleterious(0.03) possibly_damaging(0.589) TCGA-C5-A8XH-01 10 46962058 46962058 C T SYT15 Missense_Mutation p.R393K 0.11 tolerated(1) benign(0.005) TCGA-C5-A8XH-01 10 48371547 48371547 C G ZNF488 Missense_Mutation p.H339D 0.41 deleterious(0) probably_damaging(0.995) TCGA-C5-A8XH-01 10 55566324 55566324 C A PCDH15 3'UTR 0.16 TCGA-C5-A8XH-01 10 75673319 75673319 A C PLAU Silent p.P161P 0.16 TCGA-C5-A8XH-01 10 76791703 76791703 C A KAT6B 3'UTR 0.30 TCGA-C5-A8XH-01 10 77167523 77167523 C T RP11-399K21.14 5'Flank 0.12 TCGA-C5-A8XH-01 10 79579751 79579751 C A DLG5 Missense_Mutation p.G1143V 0.09 tolerated(0.11) benign(0.004) TCGA-C5-A8XH-01 10 88784447 88784447 C T FAM25A 3'UTR 0.25 TCGA-C5-A8XH-01 11 10821769 10821769 G T EIF4G2 Missense_Mutation p.Q663K 0.50 tolerated(0.76) benign(0.064) TCGA-C5-A8XH-01 11 116633589 116633589 G C BUD13 Missense_Mutation p.S239C 0.16 deleterious(0.03) benign(0.078) TCGA-C5-A8XH-01 11 119209833 119209833 G A C1QTNF5 3'UTR 0.25 TCGA-C5-A8XH-01 11 120894850 120894850 G C TBCEL 5'UTR 0.27 TCGA-C5-A8XH-01 11 124179924 124179924 C G OR8D1 Missense_Mutation p.A247P 0.15 deleterious(0) probably_damaging(0.977) TCGA-C5-A8XH-01 11 22384342 22384342 C A SLC17A6 Missense_Mutation p.T240N 0.25 tolerated(0.08) benign(0.026) TCGA-C5-A8XH-01 11 46894661 46894661 C G LRP4 Missense_Mutation p.D1525H 0.17 tolerated(0.09) benign(0.142) TCGA-C5-A8XH-01 11 490526 490526 G A PTDSS2 Missense_Mutation p.E470K 0.45 deleterious_low_confidence(0.04) benign(0.012) TCGA-C5-A8XH-01 11 60310131 60310131 G A MS4A13 3'UTR 0.47 TCGA-C5-A8XH-01 11 60885677 60885677 C G CD5 Missense_Mutation p.S42W 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A8XH-01 11 62495710 62495710 C G TTC9C 5'Flank 0.20 TCGA-C5-A8XH-01 11 62561734 62561734 G C NXF1 Missense_Mutation p.Q586E 0.13 deleterious(0.03) possibly_damaging(0.501) TCGA-C5-A8XH-01 11 63586011 63586011 C G C11orf84 Missense_Mutation p.T207R 0.19 deleterious_low_confidence(0.04) benign(0.07) TCGA-C5-A8XH-01 11 64681963 64681963 C T ATG2A Missense_Mutation p.E61K 0.37 deleterious(0.01) benign(0.31) TCGA-C5-A8XH-01 11 64693265 64693265 C G PPP2R5B Missense_Mutation p.S20W 0.23 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-C5-A8XH-01 11 66384471 66384471 G A RBM14-RBM4 Missense_Mutation p.E94K 0.24 deleterious(0.01) probably_damaging(0.977) TCGA-C5-A8XH-01 11 68154152 68154152 C T LRP5 Nonsense_Mutation p.R462* 0.27 TCGA-C5-A8XH-01 11 78437181 78437181 C T TENM4 Missense_Mutation p.A1165T 0.27 tolerated(0.11) benign(0.229) TCGA-C5-A8XH-01 11 7960328 7960328 G A OR10A3 Missense_Mutation p.S247F 0.60 deleterious(0) probably_damaging(0.995) TCGA-C5-A8XH-01 11 94279386 94279386 A G FUT4 3'UTR 0.53 TCGA-C5-A8XH-01 12 104382194 104382194 G C TDG 3'UTR 0.14 TCGA-C5-A8XH-01 12 105238358 105238358 C T SLC41A2 Silent p.V476V 0.15 TCGA-C5-A8XH-01 12 112369506 112369506 T G TMEM116 Silent p.S311S 0.18 TCGA-C5-A8XH-01 12 117014060 117014060 G A MAP1LC3B2 Missense_Mutation p.E105K 0.38 deleterious(0.02) possibly_damaging(0.604) TCGA-C5-A8XH-01 12 123413629 123413629 C G ABCB9 3'UTR 0.35 TCGA-C5-A8XH-01 12 128899901 128899901 A C TMEM132C Missense_Mutation p.E237A 0.20 tolerated(0.49) benign(0.012) TCGA-C5-A8XH-01 12 133150906 133150906 T G FBRSL1 Missense_Mutation p.V529G 0.16 deleterious(0.05) benign(0.073) TCGA-C5-A8XH-01 12 133241019 133241019 C T POLE Missense_Mutation p.G833D 0.29 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XH-01 12 44198309 44198309 G C TWF1 Missense_Mutation p.S31C 0.16 tolerated(0.15) benign(0.022) TCGA-C5-A8XH-01 12 52940257 52940257 C G KRT71 Missense_Mutation p.E380Q 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A8XH-01 12 53898551 53898551 C T TARBP2 Missense_Mutation p.R189C 0.21 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XH-01 12 54763071 54763071 G A ZNF385A 3'UTR 0.16 TCGA-C5-A8XH-01 12 56031605 56031605 C T OR10P1 Silent p.R310R 0.18 TCGA-C5-A8XH-01 12 56555242 56555242 G A MYL6 3'UTR 0.28 TCGA-C5-A8XH-01 12 57407147 57407147 C A TAC3 Missense_Mutation p.E78D 0.22 deleterious(0) benign(0.025) TCGA-C5-A8XH-01 12 57849875 57849875 A G INHBE Splice_Site p.X100_splice 0.32 TCGA-C5-A8XH-01 12 58176902 58176902 C G TSFM Missense_Mutation p.L23V 0.20 tolerated_low_confidence(0.18) benign(0.009) TCGA-C5-A8XH-01 12 58177060 58177060 C G RP11-571M6.15 Missense_Mutation p.Q82E 0.20 deleterious(0.02) benign(0.01) TCGA-C5-A8XH-01 12 6458113 6458113 G A SCNN1A Intron 0.14 TCGA-C5-A8XH-01 12 6687799 6687799 C G CHD4 Intron 0.15 TCGA-C5-A8XH-01 12 68051297 68051297 G C DYRK2 Missense_Mutation p.D204H 0.30 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 12 91363837 91363837 C T EPYC Missense_Mutation p.R261Q 0.26 tolerated(0.31) benign(0.009) TCGA-C5-A8XH-01 12 9227177 9227177 C A A2M Missense_Mutation p.Q1245H 0.22 tolerated(0.62) benign(0.013) TCGA-C5-A8XH-01 12 95434295 95434295 A T NR2C1 Missense_Mutation p.S404T 0.13 deleterious(0.03) possibly_damaging(0.59) TCGA-C5-A8XH-01 13 110436643 110436643 C T IRS2 Silent p.P586P 0.60 TCGA-C5-A8XH-01 13 111367827 111367827 G A ING1 Missense_Mutation p.E13K 0.27 tolerated_low_confidence(0.17) benign(0) TCGA-C5-A8XH-01 13 20763170 20763170 C T GJB2 Missense_Mutation p.R184Q 0.14 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 13 35735934 35735934 T A NBEA Silent p.V1303V 0.11 TCGA-C5-A8XH-01 13 37006128 37006128 G A CCNA1 5'Flank 0.19 TCGA-C5-A8XH-01 13 37524107 37524107 C T ALG5 Missense_Mutation p.R316K 0.58 tolerated(1) benign(0) TCGA-C5-A8XH-01 13 52348171 52348171 C G DHRS12 Splice_Site p.X171_splice 0.20 TCGA-C5-A8XH-01 13 52971892 52971892 C T THSD1 Missense_Mutation p.V166I 0.66 tolerated(0.22) benign(0.007) TCGA-C5-A8XH-01 14 103566784 103566784 C G EXOC3L4 Missense_Mutation p.F76L 0.53 tolerated(1) benign(0) TCGA-C5-A8XH-01 14 105477542 105477542 C G CDCA4 Nonstop_Mutation p.*242Sext*11 0.44 TCGA-C5-A8XH-01 14 105930432 105930432 G A MTA1 Silent p.T380T 0.39 TCGA-C5-A8XH-01 14 21161988 21161988 C G ANG Missense_Mutation p.H89D 0.10 deleterious(0) possibly_damaging(0.678) TCGA-C5-A8XH-01 14 21961036 21961036 C T TOX4 Missense_Mutation p.R421W 0.38 tolerated(0.14) benign(0.001) TCGA-C5-A8XH-01 14 22459108 22459110 CAT - TRAV16 In_Frame_Del p.S88del 0.20 TCGA-C5-A8XH-01 14 23451132 23451132 G A AJUBA Missense_Mutation p.A115V 0.35 tolerated(0.06) benign(0.006) TCGA-C5-A8XH-01 14 23451180 23451210 AAGGCCCGGGTGGGCGGCGGCCCCGCGGGAA - AJUBA Frame_Shift_Del p.F89Cfs*143 0.21 TCGA-C5-A8XH-01 14 23856740 23856740 C T MYH6 Missense_Mutation p.E1550K 0.35 deleterious(0) possibly_damaging(0.895) TCGA-C5-A8XH-01 14 24567847 24567847 C G PCK2 Silent p.V208V 0.10 TCGA-C5-A8XH-01 14 31374763 31374763 C T STRN3 Silent p.K630K 0.18 TCGA-C5-A8XH-01 14 38724600 38724600 T A CLEC14A Missense_Mutation p.T210S 0.11 tolerated(0.28) probably_damaging(0.999) TCGA-C5-A8XH-01 14 51132325 51132325 G C SAV1 Nonsense_Mutation p.S36* 0.18 TCGA-C5-A8XH-01 14 56763808 56763808 C G PELI2 Missense_Mutation p.A396G 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-C5-A8XH-01 14 65878614 65878614 G C FUT8 5'UTR 0.41 TCGA-C5-A8XH-01 14 68191287 68191287 G C RDH12 Missense_Mutation p.A56P 0.31 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XH-01 14 71197169 71197169 C T MAP3K9 Silent p.V1095V 0.43 TCGA-C5-A8XH-01 14 74004037 74004037 G A ACOT1 5'UTR 0.27 TCGA-C5-A8XH-01 14 74004177 74004189 CCGGTGCGAATCG - ACOT1 Frame_Shift_Del p.V19Cfs*4 0.19 TCGA-C5-A8XH-01 14 75746639 75746639 C T FOS Silent p.I67I 0.20 TCGA-C5-A8XH-01 14 76525572 76525572 C T IFT43 Intron 0.07 TCGA-C5-A8XH-01 14 77697973 77697973 C G TMEM63C Missense_Mutation p.I131M 0.46 tolerated(0.22) benign(0.213) TCGA-C5-A8XH-01 14 93994933 93994933 G A UNC79 Silent p.A154A 0.41 TCGA-C5-A8XH-01 14 94915113 94915113 C G SERPINA11 Intron 0.67 TCGA-C5-A8XH-01 15 28413600 28413600 C T HERC2 Missense_Mutation p.D3456N 0.24 benign(0.003) TCGA-C5-A8XH-01 15 34433556 34433556 G A KATNBL1 3'UTR 0.32 TCGA-C5-A8XH-01 15 35529745 35529745 T C ANP32AP1 RNA 0.45 TCGA-C5-A8XH-01 15 39910022 39910024 AAG - FSIP1 In_Frame_Del p.F537del 0.48 TCGA-C5-A8XH-01 15 42360937 42360937 C T PLA2G4D Silent p.A811A 0.42 TCGA-C5-A8XH-01 15 42836196 42836196 C T LRRC57 3'UTR 0.14 TCGA-C5-A8XH-01 15 45388077 45388077 G A DUOX2 Silent p.L1343L 0.17 TCGA-C5-A8XH-01 15 54614265 54614265 C T UNC13C Missense_Mutation p.S1466L 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-C5-A8XH-01 15 64275902 64275902 C T DAPK2 Silent p.E48E 0.30 TCGA-C5-A8XH-01 15 75129542 75129542 C G ULK3 3'UTR 0.23 TCGA-C5-A8XH-01 15 78401692 78401692 C T CIB2 Silent p.A77A 0.17 TCGA-C5-A8XH-01 16 16230395 16230395 G C ABCC1 Missense_Mutation p.D1396H 0.14 deleterious(0) probably_damaging(0.988) TCGA-C5-A8XH-01 16 18878061 18878061 C T SMG1 Missense_Mutation p.E1078K 0.17 tolerated(0.15) probably_damaging(0.98) TCGA-C5-A8XH-01 16 1912086 1912086 G A MEIOB Silent p.F53F 0.36 TCGA-C5-A8XH-01 16 2259629 2259629 C G BRICD5 Missense_Mutation p.D173H 0.21 deleterious(0) probably_damaging(0.992) TCGA-C5-A8XH-01 16 28620520 28620520 C G SULT1A1 Intron 0.19 TCGA-C5-A8XH-01 16 29998689 29998689 G A TAOK2 Silent p.L1032L 0.20 TCGA-C5-A8XH-01 16 3433373 3433373 C G ZSCAN32 Missense_Mutation p.E313Q 0.40 tolerated(0.3) benign(0.055) TCGA-C5-A8XH-01 16 3433649 3433649 C T ZSCAN32 Missense_Mutation p.E221K 0.14 tolerated(0.1) benign(0.037) TCGA-C5-A8XH-01 16 3434624 3434624 C A ZSCAN32 Nonsense_Mutation p.E145* 0.20 TCGA-C5-A8XH-01 16 3447609 3447609 G A ZSCAN32 5'UTR 0.38 TCGA-C5-A8XH-01 16 3633401 3633401 G C SLX4 Nonsense_Mutation p.S1617* 0.22 TCGA-C5-A8XH-01 16 56545085 56545114 CACTTCCTTCATGATTGAAACCTTGCAGAG - BBS2 In_Frame_Del p.A143_S152del 0.25 TCGA-C5-A8XH-01 16 57951235 57951235 G C CNGB1 Missense_Mutation p.I701M 0.25 deleterious(0.01) probably_damaging(0.971) TCGA-C5-A8XH-01 16 715612 715612 G A WDR90 Intron 0.11 TCGA-C5-A8XH-01 16 71606213 71606213 C T TAT Nonsense_Mutation p.W194* 0.24 TCGA-C5-A8XH-01 16 84493168 84493168 G C ATP2C2 Intron 0.21 TCGA-C5-A8XH-01 16 87442543 87442543 G C ZCCHC14 3'UTR 0.25 TCGA-C5-A8XH-01 16 88500616 88500616 A G ZNF469 Silent p.K2218K 0.42 TCGA-C5-A8XH-01 16 88504384 88504384 G A ZNF469 Silent p.E3474E 0.35 TCGA-C5-A8XH-01 16 88599071 88599071 G C ZFPM1 Missense_Mutation p.K332N 0.17 deleterious(0) probably_damaging(0.994) TCGA-C5-A8XH-01 16 88942459 88942459 A G CBFA2T3 3'UTR 0.06 TCGA-C5-A8XH-01 17 12799785 12799785 C T ARHGAP44 Missense_Mutation p.A52V 0.52 deleterious(0.01) possibly_damaging(0.566) TCGA-C5-A8XH-01 17 1686684 1686684 C T SMYD4 Missense_Mutation p.D703N 0.33 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 17 17394787 17394787 T A MED9 Missense_Mutation p.M140K 0.50 deleterious(0.03) probably_damaging(0.993) TCGA-C5-A8XH-01 17 1800475 1800479 GCAGT - RPA1 3'UTR 0.24 TCGA-C5-A8XH-01 17 26729284 26729284 G C SLC46A1 Silent p.L379L 0.23 TCGA-C5-A8XH-01 17 37680952 37680952 G C CDK12 Missense_Mutation p.E1041Q 0.10 probably_damaging(0.934) TCGA-C5-A8XH-01 17 40839790 40839790 G C CNTNAP1 Missense_Mutation p.G366A 0.27 tolerated(0.57) benign(0.005) TCGA-C5-A8XH-01 17 41113242 41113242 C T AARSD1 Missense_Mutation p.E100K 0.51 tolerated(0.19) benign(0.024) TCGA-C5-A8XH-01 17 41116216 41116216 C T PTGES3L-AARSD1 Silent p.L200L 0.50 TCGA-C5-A8XH-01 17 41290781 41290781 C T NBR2 RNA 0.20 TCGA-C5-A8XH-01 17 42426577 42426577 G T GRN Silent p.V15V 0.20 TCGA-C5-A8XH-01 17 45199871 45199890 CTCTTTAATCTGGTTATTGG - CDC27 Frame_Shift_Del p.A777Gfs*3 0.22 TCGA-C5-A8XH-01 17 46654225 46654225 C A HOXB4 Missense_Mutation p.Q205H 0.22 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 17 62796235 62796235 C G PLEKHM1P RNA 0.28 TCGA-C5-A8XH-01 17 62796628 62796628 C T PLEKHM1P RNA 0.25 TCGA-C5-A8XH-01 17 65722696 65722696 G C NOL11 Missense_Mutation p.G262A 0.27 tolerated(0.35) possibly_damaging(0.459) TCGA-C5-A8XH-01 17 74019613 74019613 G A EVPL Silent p.L107L 0.11 TCGA-C5-A8XH-01 17 74944077 74944077 G C MGAT5B Missense_Mutation p.G706R 0.14 deleterious(0.03) benign(0.222) TCGA-C5-A8XH-01 17 7707645 7707645 A C DNAH2 Missense_Mutation p.D3015A 0.16 possibly_damaging(0.7) TCGA-C5-A8XH-01 17 7760423 7760423 C G LSMD1 Missense_Mutation p.D107H 0.37 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XH-01 17 78444402 78444402 C G NPTX1 3'UTR 0.15 TCGA-C5-A8XH-01 17 79852416 79852416 G A ANAPC11 Silent p.E21E 0.31 TCGA-C5-A8XH-01 18 11881552 11881552 A G GNAL 3'UTR 0.25 TCGA-C5-A8XH-01 18 12353080 12353080 C G AFG3L2 Missense_Mutation p.R414S 0.28 deleterious(0) probably_damaging(0.941) TCGA-C5-A8XH-01 18 14852066 14852066 G A ANKRD30B Missense_Mutation p.E1256K 0.15 deleterious(0) probably_damaging(0.953) TCGA-C5-A8XH-01 18 32864487 32864487 G C ZSCAN30 Intron 0.23 TCGA-C5-A8XH-01 18 8784487 8784487 C T SOGA2 Silent p.H459H 0.50 TCGA-C5-A8XH-01 19 11200221 11200221 G C LDLR 5'UTR 0.30 TCGA-C5-A8XH-01 19 12763043 12763043 G C MAN2B1 Nonsense_Mutation p.S657* 0.26 TCGA-C5-A8XH-01 19 13356080 13356080 C G CACNA1A Splice_Site p.X1623_splice 0.31 TCGA-C5-A8XH-01 19 18895128 18895128 G A COMP Silent p.L654L 0.32 TCGA-C5-A8XH-01 19 18895163 18895163 G T COMP Missense_Mutation p.S642Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XH-01 19 23836330 23836330 C A ZNF675 Nonsense_Mutation p.E469* 0.28 TCGA-C5-A8XH-01 19 23836729 23836729 C A ZNF675 Nonsense_Mutation p.G336* 0.16 TCGA-C5-A8XH-01 19 2917421 2917421 C T ZNF57 Nonsense_Mutation p.Q268* 0.27 TCGA-C5-A8XH-01 19 3005749 3005749 A G TLE2 Missense_Mutation p.V573A 0.31 deleterious(0.03) probably_damaging(0.97) TCGA-C5-A8XH-01 19 35550717 35550717 C A HPN Intron 0.44 TCGA-C5-A8XH-01 19 35842619 35842619 G A FFAR1 Silent p.L55L 0.46 TCGA-C5-A8XH-01 19 3590599 3590599 A T GIPC3 3'UTR 0.22 TCGA-C5-A8XH-01 19 37038699 37038699 T G ZNF529 Missense_Mutation p.Y254S 0.21 deleterious(0) possibly_damaging(0.866) TCGA-C5-A8XH-01 19 39228910 39228910 G T CAPN12 Intron 0.22 TCGA-C5-A8XH-01 19 39882062 39882062 G C MED29 Missense_Mutation p.K21N 0.12 deleterious_low_confidence(0.02) benign(0.403) TCGA-C5-A8XH-01 19 43237188 43237202 TGGAGATGGAGGGCT - PSG3 In_Frame_Del p.K148_S152del 0.27 TCGA-C5-A8XH-01 19 44792738 44792738 C G ZNF235 Missense_Mutation p.V284L 0.12 tolerated(0.87) benign(0.003) TCGA-C5-A8XH-01 19 44891164 44891164 G C ZNF285 Missense_Mutation p.L415V 0.14 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XH-01 19 45811744 45811744 G A CKM Missense_Mutation p.H234Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XH-01 19 46387005 46387005 C A IRF2BP1 3'UTR 0.50 TCGA-C5-A8XH-01 19 50310294 50310294 C G FUZ 3'UTR 0.14 TCGA-C5-A8XH-01 19 50374823 50374823 G A AKT1S1 Missense_Mutation p.S223L 0.56 tolerated(0.09) benign(0.221) TCGA-C5-A8XH-01 19 51295319 51295337 GTTTTCCCCAGCTGCTGAG - ACPT Splice_Site p.X151_splice 0.27 TCGA-C5-A8XH-01 19 52115606 52115606 A T SIGLEC5 Missense_Mutation p.L512M 0.16 tolerated(0.17) benign(0.188) TCGA-C5-A8XH-01 19 53856361 53856361 C A ZNF845 Missense_Mutation p.N811K 0.43 tolerated(0.08) benign(0.077) TCGA-C5-A8XH-01 19 54662094 54662094 G A LENG1 Missense_Mutation p.R80W 0.16 deleterious(0) probably_damaging(0.989) TCGA-C5-A8XH-01 19 55220549 55220549 G T AC098784.2 3'Flank 0.20 TCGA-C5-A8XH-01 19 55876950 55876950 C A IL11 3'UTR 0.48 TCGA-C5-A8XH-01 19 56904860 56904860 C T ZNF582 5'UTR 0.27 TCGA-C5-A8XH-01 19 58458857 58458857 G A ZNF256 5'UTR 0.32 TCGA-C5-A8XH-01 19 58596139 58596139 G A ZSCAN18 Silent p.R538R 0.25 TCGA-C5-A8XH-01 19 59067522 59067522 C G UBE2M Missense_Mutation p.Q162H 0.38 tolerated(0.18) benign(0.014) TCGA-C5-A8XH-01 19 9070516 9070516 G A MUC16 Missense_Mutation p.P5644S 0.21 unknown(0) TCGA-C5-A8XH-01 19 9076168 9076168 G C MUC16 Missense_Mutation p.P3760A 0.28 unknown(0) TCGA-C5-A8XH-01 1 111731337 111731337 G A DENND2D Silent p.I362I 0.19 TCGA-C5-A8XH-01 1 114515706 114515706 A T HIPK1 Missense_Mutation p.R1069W 0.21 deleterious(0) probably_damaging(0.966) TCGA-C5-A8XH-01 1 145771709 145771709 C G GPR89A Missense_Mutation p.D311H 0.36 deleterious(0.01) possibly_damaging(0.643) TCGA-C5-A8XH-01 1 153945306 153945306 C A CREB3L4 Silent p.L210L 0.15 TCGA-C5-A8XH-01 1 154098899 154098899 T C NUP210L Missense_Mutation p.E409G 0.43 deleterious(0.02) benign(0.109) TCGA-C5-A8XH-01 1 15541847 15541847 G C TMEM51 Missense_Mutation p.K88N 0.30 deleterious(0) possibly_damaging(0.53) TCGA-C5-A8XH-01 1 156348163 156348163 T G RHBG Missense_Mutation p.Y216D 0.22 deleterious(0) possibly_damaging(0.879) TCGA-C5-A8XH-01 1 156552170 156552170 C G TTC24 Missense_Mutation p.A285G 0.17 deleterious(0.03) probably_damaging(0.991) TCGA-C5-A8XH-01 1 156721319 156721319 C A HDGF Intron 0.15 TCGA-C5-A8XH-01 1 156721335 156721335 C T HDGF Intron 0.25 TCGA-C5-A8XH-01 1 167088701 167088701 G A DUSP27 Missense_Mutation p.R218K 0.12 tolerated(0.32) benign(0.162) TCGA-C5-A8XH-01 1 173430174 173430174 C T RP11-296O14.3 RNA 0.18 TCGA-C5-A8XH-01 1 181549810 181549810 C T CACNA1E Silent p.I283I 0.13 TCGA-C5-A8XH-01 1 185260433 185260433 G C SWT1 3'UTR 0.27 TCGA-C5-A8XH-01 1 197108916 197108916 G A ASPM Silent p.F669F 0.11 TCGA-C5-A8XH-01 1 197876313 197876313 C T C1orf53 Missense_Mutation p.S134F 0.10 deleterious(0.01) probably_damaging(0.967) TCGA-C5-A8XH-01 1 200882969 200882969 G T C1orf106 3'Flank 0.36 TCGA-C5-A8XH-01 1 206711531 206711531 G T RASSF5 Missense_Mutation p.R163L 0.45 deleterious(0) possibly_damaging(0.454) TCGA-C5-A8XH-01 1 21070668 21070668 G A HP1BP3 3'UTR 0.28 TCGA-C5-A8XH-01 1 214209055 214209055 G A PROX1 Missense_Mutation p.A698T 0.50 tolerated(0.26) benign(0.01) TCGA-C5-A8XH-01 1 215795052 215795052 G C KCTD3 3'UTR 0.11 TCGA-C5-A8XH-01 1 226173134 226173134 T G SDE2 Missense_Mutation p.M409L 0.37 tolerated(0.2) benign(0.001) TCGA-C5-A8XH-01 1 22965905 22965905 G C C1QA 3'UTR 0.06 TCGA-C5-A8XH-01 1 23418485 23418491 TTGATGA - LUZP1 Frame_Shift_Del p.I755Nfs*9 0.21 TCGA-C5-A8XH-01 1 236144960 236144960 C G NID1 Missense_Mutation p.E1060Q 0.27 deleterious(0.02) possibly_damaging(0.523) TCGA-C5-A8XH-01 1 245772663 245772663 C T KIF26B Missense_Mutation p.R583C 0.16 deleterious(0.01) unknown(0) TCGA-C5-A8XH-01 1 248637233 248637233 C G OR2T3 Missense_Mutation p.C194W 0.25 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XH-01 1 25944710 25944710 T C MAN1C1 Missense_Mutation p.F141S 0.19 tolerated(0.88) benign(0.001) TCGA-C5-A8XH-01 1 27124128 27124128 G A PIGV Silent p.E425E 0.32 TCGA-C5-A8XH-01 1 27190567 27190567 C T SFN 3'UTR 0.36 TCGA-C5-A8XH-01 1 35229073 35229073 C T GJB4 3'UTR 0.11 TCGA-C5-A8XH-01 1 36766621 36766621 G A THRAP3 Missense_Mutation p.R813K 0.52 tolerated(0.1) possibly_damaging(0.87) TCGA-C5-A8XH-01 1 36941030 36941030 C T CSF3R Silent p.L103L 0.12 TCGA-C5-A8XH-01 1 40230368 40230368 C G BMP8B Silent p.V265V 0.05 TCGA-C5-A8XH-01 1 41094608 41094608 C T RIMS3 Silent p.K196K 0.09 TCGA-C5-A8XH-01 1 41514481 41514481 C T SCMH1 Missense_Mutation p.G386E 0.13 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 1 41945002 41945002 G C EDN2 3'UTR 0.21 TCGA-C5-A8XH-01 1 46089102 46089102 G A CCDC17 Silent p.L94L 0.10 TCGA-C5-A8XH-01 1 47040567 47040567 C T MKNK1 Intron 0.20 TCGA-C5-A8XH-01 1 55074881 55074881 T A FAM151A 3'UTR 0.22 TCGA-C5-A8XH-01 1 6188641 6188641 G C CHD5 Silent p.V1216V 0.18 TCGA-C5-A8XH-01 1 67672637 67672637 G C IL23R Missense_Mutation p.A233P 0.12 deleterious(0.02) benign(0.169) TCGA-C5-A8XH-01 1 78161995 78161995 C G USP33 3'UTR 0.38 TCGA-C5-A8XH-01 1 94342156 94342156 G C DNTTIP2 Silent p.L445L 0.22 TCGA-C5-A8XH-01 1 97915698 97915698 G C DPYD Missense_Mutation p.L608V 0.60 tolerated(0.35) benign(0.434) TCGA-C5-A8XH-01 20 14305051 14305051 C G FLRT3 3'UTR 0.45 TCGA-C5-A8XH-01 20 210085 210101 TAATGAAGACGTCCAAG - DEFB129 Frame_Shift_Del p.E77Afs*8 0.11 TCGA-C5-A8XH-01 20 25261002 25261002 C G PYGB Missense_Mutation p.P398R 0.14 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 20 2845048 2845048 C A VPS16 Missense_Mutation p.N586K 0.38 tolerated(0.39) benign(0.114) TCGA-C5-A8XH-01 20 3184023 3184023 G C DDRGK1 Missense_Mutation p.A44G 0.09 tolerated(0.14) benign(0.042) TCGA-C5-A8XH-01 20 36720184 36720184 G C RPRD1B 3'UTR 0.17 TCGA-C5-A8XH-01 20 3682073 3682073 C T SIGLEC1 Missense_Mutation p.E482K 0.17 tolerated(1) benign(0.042) TCGA-C5-A8XH-01 20 37620100 37620100 C G DHX35 Missense_Mutation p.L152V 0.20 tolerated(0.15) benign(0.02) TCGA-C5-A8XH-01 20 40050239 40050239 C T CHD6 Missense_Mutation p.C1679Y 0.39 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-C5-A8XH-01 20 40944378 40944378 G A PTPRT Silent p.L708L 0.28 TCGA-C5-A8XH-01 20 44004043 44004043 G A TP53TG5 Missense_Mutation p.S135L 0.29 tolerated(0.35) possibly_damaging(0.556) TCGA-C5-A8XH-01 20 44577685 44577685 G C ZNF335 Silent p.G1312G 0.21 TCGA-C5-A8XH-01 20 46301102 46301102 C T SULF2 Silent p.L472L 0.21 TCGA-C5-A8XH-01 21 28296211 28296211 C T ADAMTS5 3'UTR 0.44 TCGA-C5-A8XH-01 21 40565633 40565633 C G BRWD1 Intron 0.08 TCGA-C5-A8XH-01 21 42824647 42824647 G T MX1 Missense_Mutation p.V537L 0.32 tolerated(0.78) benign(0.044) TCGA-C5-A8XH-01 21 43945891 43945891 G A SLC37A1 Missense_Mutation p.R21K 0.28 tolerated(0.28) benign(0.075) TCGA-C5-A8XH-01 22 23237620 23237620 A G IGLL5 Missense_Mutation p.K131E 0.14 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-C5-A8XH-01 22 23615876 23615876 C G BCR Missense_Mutation p.A677G 0.24 deleterious(0) probably_damaging(0.918) TCGA-C5-A8XH-01 22 25598755 25598755 G C CRYBB3 Missense_Mutation p.G64R 0.30 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 22 29563059 29563059 C T KREMEN1 Missense_Mutation p.L482F 0.23 unknown(0) TCGA-C5-A8XH-01 22 30688381 30688381 C T TBC1D10A Missense_Mutation p.E511K 0.14 deleterious_low_confidence(0.02) benign(0.184) TCGA-C5-A8XH-01 22 30690780 30690790 CTCACCAGTTT - TBC1D10A Splice_Site p.X241_splice 0.13 TCGA-C5-A8XH-01 22 35815950 35815950 G A MCM5 Missense_Mutation p.A593T 0.18 tolerated(0.12) benign(0.012) TCGA-C5-A8XH-01 22 35947600 35947600 G T RASD2 Nonsense_Mutation p.E108* 0.33 TCGA-C5-A8XH-01 22 38616866 38616866 C G TMEM184B 3'UTR 0.14 TCGA-C5-A8XH-01 22 39003397 39003397 T C FAM227A Missense_Mutation p.K370E 0.10 tolerated(0.38) benign(0.016) TCGA-C5-A8XH-01 22 42463837 42463837 C T NAGA Missense_Mutation p.D86N 0.32 tolerated(0.09) benign(0.41) TCGA-C5-A8XH-01 22 42611130 42611130 C A TCF20 Missense_Mutation p.G61V 0.30 possibly_damaging(0.562) TCGA-C5-A8XH-01 22 42897647 42897647 G A SERHL RNA 0.16 TCGA-C5-A8XH-01 2 109405355 109405355 T A CCDC138 Missense_Mutation p.Y67N 0.23 tolerated_low_confidence(0.07) benign(0.025) TCGA-C5-A8XH-01 2 131117030 131117030 G C PTPN18 Missense_Mutation p.D114H 0.54 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 2 163215621 163215621 C G GCA Missense_Mutation p.F174L 0.13 tolerated(0.79) benign(0.012) TCGA-C5-A8XH-01 2 174774224 174774224 G C SP3 3'UTR 0.21 TCGA-C5-A8XH-01 2 176959436 176959436 A G HOXD13 Missense_Mutation p.K337R 0.14 deleterious(0.05) benign(0.233) TCGA-C5-A8XH-01 2 17898427 17898427 G A SMC6 Missense_Mutation p.S370F 0.33 tolerated(0.77) benign(0.008) TCGA-C5-A8XH-01 2 179595031 179595031 C G TTN Missense_Mutation p.K6032N 0.25 TCGA-C5-A8XH-01 2 179610748 179610748 C T TTN Intron 0.40 TCGA-C5-A8XH-01 2 185802467 185802467 G A ZNF804A Missense_Mutation p.D782N 0.33 deleterious(0.01) probably_damaging(0.977) TCGA-C5-A8XH-01 2 189877388 189877388 G A COL3A1 3'UTR 0.15 TCGA-C5-A8XH-01 2 191184525 191184525 G A HIBCH 5'UTR 0.13 TCGA-C5-A8XH-01 2 202677221 202677221 A C CDK15 Silent p.L128L 0.05 TCGA-C5-A8XH-01 2 209217498 209217498 A T PIKFYVE Missense_Mutation p.M1946L 0.22 deleterious(0.04) possibly_damaging(0.505) TCGA-C5-A8XH-01 2 234106780 234106780 C T INPP5D Silent p.I899I 0.62 TCGA-C5-A8XH-01 2 25167805 25167805 T A DNAJC27 3'UTR 0.37 TCGA-C5-A8XH-01 2 3652031 3652031 C G COLEC11 Missense_Mutation p.S48C 0.52 deleterious(0.03) probably_damaging(0.993) TCGA-C5-A8XH-01 2 39222460 39222460 C T SOS1 Missense_Mutation p.M1050I 0.13 tolerated(0.18) benign(0.017) TCGA-C5-A8XH-01 2 43452308 43452308 C T ZFP36L2 Missense_Mutation p.C212Y 0.47 deleterious(0) possibly_damaging(0.879) TCGA-C5-A8XH-01 2 50765458 50765458 C T NRXN1 Silent p.R732R 0.16 TCGA-C5-A8XH-01 2 54175657 54175657 G T PSME4 Nonsense_Mutation p.S134* 0.24 TCGA-C5-A8XH-01 2 64863452 64863452 G A SERTAD2 Missense_Mutation p.S185F 0.26 deleterious(0.03) possibly_damaging(0.896) TCGA-C5-A8XH-01 2 70917989 70918007 CATAATAGGCCATGTCCCC - ADD2 Frame_Shift_Del p.G254Tfs*28 0.11 TCGA-C5-A8XH-01 2 71365949 71365949 G A MPHOSPH10 Intron 0.57 TCGA-C5-A8XH-01 2 75119212 75119212 C A HK2 3'UTR 0.20 TCGA-C5-A8XH-01 2 85571166 85571189 AGGCTTCCACAAAGGAGTTTTTGA - RETSAT In_Frame_Del p.F489_A496del 0.08 TCGA-C5-A8XH-01 2 99180019 99180019 C T INPP4A Silent p.F654F 0.24 TCGA-C5-A8XH-01 3 102187841 102187841 G C ZPLD1 Missense_Mutation p.E281D 0.13 deleterious(0.03) possibly_damaging(0.848) TCGA-C5-A8XH-01 3 10280685 10280685 C T IRAK2 Missense_Mutation p.S576F 0.38 tolerated(0.13) benign(0.01) TCGA-C5-A8XH-01 3 108812284 108812284 C G MORC1 Missense_Mutation p.D230H 0.20 deleterious(0.02) possibly_damaging(0.838) TCGA-C5-A8XH-01 3 111921209 111921209 C - SLC9C1 Frame_Shift_Del p.R737Kfs*2 0.17 TCGA-C5-A8XH-01 3 113699563 113699563 G C KIAA1407 Silent p.V747V 0.35 TCGA-C5-A8XH-01 3 115571407 115571407 T A LSAMP Missense_Mutation p.Q191L 0.08 deleterious(0) probably_damaging(0.992) TCGA-C5-A8XH-01 3 121132133 121132133 G A STXBP5L Missense_Mutation p.R1050Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XH-01 3 125822676 125822676 C T ALDH1L1 Silent p.L899L 0.38 TCGA-C5-A8XH-01 3 141327409 141327409 G A RASA2 Missense_Mutation p.V699I 0.45 tolerated(1) benign(0.003) TCGA-C5-A8XH-01 3 142509858 142509858 C G TRPC1 Intron 0.12 TCGA-C5-A8XH-01 3 15094943 15094943 C T MRPS25 Silent p.E91E 0.23 TCGA-C5-A8XH-01 3 171571346 171571346 G A TMEM212 Silent p.L83L 0.14 TCGA-C5-A8XH-01 3 185216824 185216824 G A TMEM41A 5'UTR 0.64 TCGA-C5-A8XH-01 3 185637235 185637235 G C TRA2B Missense_Mutation p.Q258E 0.09 tolerated_low_confidence(0.22) benign(0.217) TCGA-C5-A8XH-01 3 195597045 195597045 C T TNK2 Missense_Mutation p.D558N 0.52 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A8XH-01 3 196438969 196438969 G A CEP19 5'UTR 0.46 TCGA-C5-A8XH-01 3 196910665 196910665 G A DLG1 Intron 0.36 TCGA-C5-A8XH-01 3 37034550 37034550 T A EPM2AIP1 Nonsense_Mutation p.R7* 0.13 TCGA-C5-A8XH-01 3 37368925 37368925 C A GOLGA4 Missense_Mutation p.Q1872K 0.47 probably_damaging(0.997) TCGA-C5-A8XH-01 3 383622 383622 G C CHL1 Missense_Mutation p.R179T 0.22 deleterious(0) probably_damaging(0.92) TCGA-C5-A8XH-01 3 39227703 39227703 C A XIRP1 Missense_Mutation p.Q1078H 0.26 deleterious(0.04) benign(0.019) TCGA-C5-A8XH-01 3 50154531 50154531 G C RBM5 Missense_Mutation p.E707Q 0.22 deleterious(0) probably_damaging(0.954) TCGA-C5-A8XH-01 3 52326924 52326924 G A GLYCTK Missense_Mutation p.D452N 0.25 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XH-01 3 52548491 52548491 C G STAB1 Silent p.V1219V 0.14 TCGA-C5-A8XH-01 3 57232500 57232500 G C HESX1 Silent p.V126V 0.19 TCGA-C5-A8XH-01 3 57386128 57386128 C G DNAH12 Missense_Mutation p.C43S 0.31 tolerated(0.12) benign(0.209) TCGA-C5-A8XH-01 3 65888344 65888344 G A MAGI1 Intron 0.20 TCGA-C5-A8XH-01 4 104066296 104066296 T C CENPE Missense_Mutation p.K1590E 0.15 benign(0.08) TCGA-C5-A8XH-01 4 119952714 119952714 C G SYNPO2 Missense_Mutation p.I928M 0.11 deleterious(0) probably_damaging(0.997) TCGA-C5-A8XH-01 4 129795841 129795841 C T JADE1 3'UTR 0.25 TCGA-C5-A8XH-01 4 144796593 144796593 T G GYPE Intron 0.10 TCGA-C5-A8XH-01 4 164435246 164435246 C G TMA16 Missense_Mutation p.Q59E 0.11 deleterious(0) benign(0.297) TCGA-C5-A8XH-01 4 17845062 17845062 G C NCAPG 3'UTR 0.41 TCGA-C5-A8XH-01 4 57896491 57896491 C G POLR2B Missense_Mutation p.L1121V 0.21 tolerated(0.34) benign(0.021) TCGA-C5-A8XH-01 4 88401570 88401570 G C SPARCL1 Missense_Mutation p.P591A 0.64 tolerated(0.09) probably_damaging(1) TCGA-C5-A8XH-01 5 127637194 127637195 - A FBN2 Frame_Shift_Ins p.E1976* 0.19 TCGA-C5-A8XH-01 5 132202522 132202522 G T UQCRQ Intron 0.59 TCGA-C5-A8XH-01 5 132203229 132203229 G A UQCRQ Silent p.E68E 0.58 TCGA-C5-A8XH-01 5 140745008 140745008 G A PCDHGA5 Missense_Mutation p.V371I 0.69 deleterious_low_confidence(0.03) possibly_damaging(0.665) TCGA-C5-A8XH-01 5 161909 161909 G A PLEKHG4B Silent p.Q477Q 0.12 TCGA-C5-A8XH-01 5 38958862 38958862 C T RICTOR Nonsense_Mutation p.W750* 0.12 TCGA-C5-A8XH-01 5 43533870 43533870 C T PAIP1 Missense_Mutation p.D408N 0.09 deleterious(0) possibly_damaging(0.798) TCGA-C5-A8XH-01 5 94275819 94275819 A C MCTP1 Missense_Mutation p.L381R 0.41 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XH-01 6 106556538 106556538 G A PRDM1 3'UTR 0.30 TCGA-C5-A8XH-01 6 108798095 108798095 C T LACE1 Silent p.V306V 0.51 TCGA-C5-A8XH-01 6 117679107 117679107 G C ROS1 Silent p.L1238L 0.19 TCGA-C5-A8XH-01 6 127765023 127765023 C A KIAA0408 3'UTR 0.19 TCGA-C5-A8XH-01 6 131973709 131973709 G A ENPP3 Missense_Mutation p.R102H 0.63 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 6 149826734 149826734 C T PPIL4 Missense_Mutation p.R445Q 0.25 tolerated(0.12) benign(0.003) TCGA-C5-A8XH-01 6 150132505 150132505 G C PCMT1 3'UTR 0.29 TCGA-C5-A8XH-01 6 158923486 158923486 G A TULP4 Missense_Mutation p.E931K 0.34 deleterious_low_confidence(0.01) benign(0.101) TCGA-C5-A8XH-01 6 161032626 161032626 C T LPA Silent p.S857S 0.06 TCGA-C5-A8XH-01 6 167550687 167550687 C G CCR6 Missense_Mutation p.F323L 0.50 deleterious(0) probably_damaging(0.964) TCGA-C5-A8XH-01 6 17805743 17805743 C G KIF13A Missense_Mutation p.R756T 0.09 deleterious(0) possibly_damaging(0.7) TCGA-C5-A8XH-01 6 27805869 27805869 G A HIST1H2AK Silent p.H83H 0.14 TCGA-C5-A8XH-01 6 31380228 31380228 G A MICA 3'UTR 0.12 TCGA-C5-A8XH-01 6 31839299 31839299 G A SLC44A4 Missense_Mutation p.P190L 0.72 tolerated(0.15) benign(0.246) TCGA-C5-A8XH-01 6 33626476 33626476 G C ITPR3 Silent p.L133L 0.15 TCGA-C5-A8XH-01 6 42018249 42018249 C T TAF8 5'Flank 0.12 TCGA-C5-A8XH-01 6 43323425 43323425 T C ZNF318 Silent p.E549E 0.07 TCGA-C5-A8XH-01 6 44201839 44201839 C T SLC29A1 3'UTR 0.48 TCGA-C5-A8XH-01 6 52947395 52947395 G A FBXO9 Missense_Mutation p.R221K 0.12 tolerated(0.08) benign(0.057) TCGA-C5-A8XH-01 6 65300818 65300818 A T EYS Missense_Mutation p.S1648T 0.13 tolerated_low_confidence(0.51) benign(0.064) TCGA-C5-A8XH-01 6 70991099 70991099 G C COL9A1 Silent p.G290G 0.16 TCGA-C5-A8XH-01 7 106842124 106842124 A G COG5 3'Flank 0.35 TCGA-C5-A8XH-01 7 130044525 130044525 G A CEP41 Missense_Mutation p.P101L 0.19 tolerated(0.12) benign(0.001) TCGA-C5-A8XH-01 7 131130562 131130562 C G MKLN1 Silent p.G475G 0.19 TCGA-C5-A8XH-01 7 151845880 151845880 C T KMT2C Missense_Mutation p.E4378K 0.45 probably_damaging(0.995) TCGA-C5-A8XH-01 7 152012340 152012340 C T KMT2C Missense_Mutation p.G158E 0.42 benign(0.109) TCGA-C5-A8XH-01 7 156432439 156432439 C T C7orf13 3'UTR 0.42 TCGA-C5-A8XH-01 7 17349606 17349606 C T AHR Missense_Mutation p.R38W 0.28 deleterious(0) probably_damaging(1) TCGA-C5-A8XH-01 7 33946447 33946447 G C BMPER Missense_Mutation p.E51Q 0.29 tolerated(0.12) possibly_damaging(0.806) TCGA-C5-A8XH-01 7 5265490 5265490 C T WIPI2 Silent p.D259D 0.53 TCGA-C5-A8XH-01 7 57188761 57188761 C G ZNF479 Missense_Mutation p.E121Q 0.32 deleterious(0.03) benign(0.015) TCGA-C5-A8XH-01 7 91632441 91632441 G A AKAP9 Silent p.L1070L 0.15 TCGA-C5-A8XH-01 7 91632519 91632519 G A AKAP9 Silent p.Q1096Q 0.13 TCGA-C5-A8XH-01 7 91709265 91709265 G C AKAP9 Missense_Mutation p.L2606F 0.07 possibly_damaging(0.597) TCGA-C5-A8XH-01 7 97922147 97922147 C T BRI3 3'Flank 0.19 TCGA-C5-A8XH-01 7 99913430 99913430 C G SPDYE3 Missense_Mutation p.F408L 0.48 deleterious(0.02) benign(0.101) TCGA-C5-A8XH-01 8 101271002 101271002 G C RNF19A Missense_Mutation p.R767G 0.09 deleterious_low_confidence(0) possibly_damaging(0.552) TCGA-C5-A8XH-01 8 104432604 104432604 G A DCAF13 Silent p.S213S 0.29 TCGA-C5-A8XH-01 8 136533503 136533503 G A KHDRBS3 Missense_Mutation p.E38K 0.64 tolerated(0.27) possibly_damaging(0.475) TCGA-C5-A8XH-01 8 139149407 139149407 A T FAM135B Missense_Mutation p.L1333H 0.22 deleterious(0) possibly_damaging(0.88) TCGA-C5-A8XH-01 8 21983133 21983133 C G HR Missense_Mutation p.E506D 0.19 tolerated(0.23) benign(0.013) TCGA-C5-A8XH-01 8 23712212 23712241 TGCCTCCGCTGCTGCTGCTGCTGCCGCCGC - STC1 5'UTR 0.14 TCGA-C5-A8XH-01 8 27516507 27516507 G T SCARA3 Nonsense_Mutation p.E274* 0.23 TCGA-C5-A8XH-01 8 2813247 2813247 C G CSMD1 Silent p.V3286V 0.13 TCGA-C5-A8XH-01 8 3265554 3265554 A G CSMD1 Silent p.S646S 0.57 TCGA-C5-A8XH-01 8 35579725 35579725 C G UNC5D Intron 0.49 TCGA-C5-A8XH-01 8 37972486 37972486 G A ASH2L Missense_Mutation p.E249K 0.30 tolerated(0.08) benign(0.103) TCGA-C5-A8XH-01 8 37972489 37972489 G A ASH2L Missense_Mutation p.D250N 0.29 deleterious(0.03) benign(0.299) TCGA-C5-A8XH-01 8 56438172 56438172 G T XKR4 3'UTR 0.21 TCGA-C5-A8XH-01 8 82606374 82606374 G C SLC10A5 Silent p.L278L 0.33 TCGA-C5-A8XH-01 8 86019632 86019632 G A LRRCC1 Silent p.Q34Q 0.47 TCGA-C5-A8XH-01 9 110092208 110092208 T C RAD23B 3'UTR 0.21 TCGA-C5-A8XH-01 9 114490118 114490118 C - C9orf84 Frame_Shift_Del p.E481Kfs*22 0.35 TCGA-C5-A8XH-01 9 131940339 131940339 C T IER5L 5'UTR 0.36 TCGA-C5-A8XH-01 9 137676857 137676857 C G COL5A1 Missense_Mutation p.P836R 0.08 unknown(0) TCGA-C5-A8XH-01 9 72659589 72659589 C T MAMDC2 Silent p.L42L 0.28 TCGA-C5-A8XH-01 X 100537351 100537355 TTTCT - TAF7L Frame_Shift_Del p.E209Gfs*17 0.08 TCGA-C5-A8XH-01 X 102841174 102841174 C A TCEAL4 5'UTR 0.19 TCGA-C5-A8XH-01 X 105449734 105449734 G A MUM1L1 Silent p.L103L 0.64 TCGA-C5-A8XH-01 X 108924330 108924330 G C ACSL4 Missense_Mutation p.I225M 0.23 deleterious(0) possibly_damaging(0.828) TCGA-C5-A8XH-01 X 112025795 112025795 T G AMOT Missense_Mutation p.N738T 0.24 unknown(0) TCGA-C5-A8XH-01 X 11318746 11318746 G T AMELX 3'UTR 0.22 TCGA-C5-A8XH-01 X 117809964 117809964 A - DOCK11 Frame_Shift_Del p.K1757Rfs*4 0.30 TCGA-C5-A8XH-01 X 123179180 123179180 C A STAG2 Nonsense_Mutation p.S210* 0.52 TCGA-C5-A8XH-01 X 130215693 130215693 C G ARHGAP36 Missense_Mutation p.I18M 0.20 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-C5-A8XH-01 X 132435311 132435311 C T GPC4 3'UTR 0.16 TCGA-C5-A8XH-01 X 134125682 134125682 T - SMIM10 3'UTR 0.44 TCGA-C5-A8XH-01 X 152034435 152034435 C G NSDHL Missense_Mutation p.P206A 0.26 deleterious(0) probably_damaging(0.997) TCGA-C5-A8XH-01 X 153217449 153217449 C G HCFC1 Missense_Mutation p.Q1701H 0.19 deleterious_low_confidence(0.05) probably_damaging(0.965) TCGA-C5-A8XH-01 X 37668873 37668873 G A CYBB Silent p.L505L 0.17 TCGA-C5-A8XH-01 X 37985994 37985994 T C SYTL5 3'UTR 0.13 TCGA-C5-A8XH-01 X 43515504 43515504 C T MAOA 5'UTR 0.11 TCGA-C5-A8XH-01 X 44703395 44703395 C T DUSP21 Missense_Mutation p.S6F 0.19 tolerated(0.16) possibly_damaging(0.485) TCGA-C5-A8XH-01 X 46919165 46919165 A G JADE3 3'UTR 0.17 TCGA-C5-A8XH-01 X 48681671 48681671 G A HDAC6 Silent p.E954E 0.11 TCGA-C5-A8XH-01 X 48839431 48839431 C G GRIPAP1 Missense_Mutation p.G520A 0.19 probably_damaging(0.994) TCGA-C5-A8XH-01 X 53563603 53563605 CTT - HUWE1 In_Frame_Del p.E4054del 0.65 TCGA-C5-A8XH-01 X 56259713 56259713 G C KLF8 5'UTR 0.64 TCGA-C5-A8XH-01 X 92928275 92928275 G C NAP1L3 Missense_Mutation p.S10W 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.487) TCGA-C5-A8XI-01 10 119029874 119029874 T A SLC18A2 Missense_Mutation p.I447N 0.31 deleterious(0) possibly_damaging(0.786) TCGA-C5-A8XI-01 10 17401541 17401541 G A ST8SIA6 Missense_Mutation p.R117W 0.22 deleterious(0.02) benign(0.022) TCGA-C5-A8XI-01 10 26800821 26800821 C T APBB1IP Missense_Mutation p.P226L 0.31 deleterious(0) benign(0.284) TCGA-C5-A8XI-01 10 70506953 70506953 G A CCAR1 Missense_Mutation p.R185K 0.26 deleterious(0) probably_damaging(0.946) TCGA-C5-A8XI-01 10 95107389 95107389 C T MYOF Missense_Mutation p.V1412I 0.27 tolerated(0.32) benign(0.042) TCGA-C5-A8XI-01 11 132527153 132527153 C T OPCML Missense_Mutation p.A77T 0.21 tolerated(0.13) benign(0.376) TCGA-C5-A8XI-01 11 22215049 22215049 C T ANO5 Missense_Mutation p.P4L 0.30 deleterious_low_confidence(0) benign(0.021) TCGA-C5-A8XI-01 11 49194959 49194959 G T FOLH1 Missense_Mutation p.A392E 0.35 deleterious(0) possibly_damaging(0.873) TCGA-C5-A8XI-01 11 61032500 61032500 G A VWCE Silent p.Y689Y 0.28 TCGA-C5-A8XI-01 11 62678321 62678321 C T CHRM1 Silent p.T84T 0.18 TCGA-C5-A8XI-01 12 42499669 42499669 G C GXYLT1 Missense_Mutation p.S272C 0.10 deleterious(0) probably_damaging(1) TCGA-C5-A8XI-01 12 51868974 51868974 G A SLC4A8 Missense_Mutation p.R719H 0.23 deleterious(0.03) benign(0.018) TCGA-C5-A8XI-01 12 53874907 53874907 A G MAP3K12 3'UTR 0.06 TCGA-C5-A8XI-01 12 98849551 98849551 C G SLC9A7P1 RNA 0.08 TCGA-C5-A8XI-01 14 73140953 73140953 C T DPF3 Missense_Mutation p.R289H 0.25 deleterious(0) probably_damaging(0.923) TCGA-C5-A8XI-01 15 83502192 83502192 G C WHAMM Missense_Mutation p.E778D 0.17 deleterious(0) probably_damaging(0.995) TCGA-C5-A8XI-01 16 4730049 4730049 C G MGRN1 Nonsense_Mutation p.S361* 0.06 TCGA-C5-A8XI-01 16 66586678 66586678 C T CKLF-CMTM1 Silent p.H20H 0.27 TCGA-C5-A8XI-01 16 66657382 66657382 G A CMTM4 Silent p.S129S 0.09 TCGA-C5-A8XI-01 17 41108334 41108334 T C AARSD1 Missense_Mutation p.S184G 0.23 deleterious(0.02) benign(0) TCGA-C5-A8XI-01 17 73842761 73842761 G A WBP2 3'UTR 0.05 TCGA-C5-A8XI-01 17 74774408 74774408 C T MFSD11 Missense_Mutation p.R442C 0.33 deleterious(0) benign(0.329) TCGA-C5-A8XI-01 17 8660630 8660630 C A SPDYE4 Missense_Mutation p.R97L 0.40 deleterious(0.01) benign(0.077) TCGA-C5-A8XI-01 18 20602198 20602198 T C RBBP8 Missense_Mutation p.V854A 0.18 deleterious(0) probably_damaging(0.958) TCGA-C5-A8XI-01 18 32833423 32833423 G A ZSCAN30 Silent p.T492T 0.29 TCGA-C5-A8XI-01 18 347218 347218 G A COLEC12 Missense_Mutation p.T135M 0.07 tolerated(0.24) benign(0.037) TCGA-C5-A8XI-01 19 14065218 14065218 A T DCAF15 Missense_Mutation p.N67Y 0.27 tolerated(0.19) benign(0.029) TCGA-C5-A8XI-01 19 16902374 16902374 G T NWD1 Missense_Mutation p.V1052F 0.19 deleterious(0) probably_damaging(0.936) TCGA-C5-A8XI-01 1 109180405 109180405 G A FAM102B 3'UTR 0.21 TCGA-C5-A8XI-01 1 113213565 113213565 A C CAPZA1 3'UTR 0.33 TCGA-C5-A8XI-01 1 163044230 163044230 C A RGS4 Silent p.R263R 0.51 TCGA-C5-A8XI-01 1 20640980 20640980 C T VWA5B1 Missense_Mutation p.T153M 0.22 deleterious(0) probably_damaging(0.978) TCGA-C5-A8XI-01 1 211545949 211545949 C T TRAF5 Missense_Mutation p.H527Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XI-01 1 214170735 214170735 C T PROX1 Missense_Mutation p.A286V 0.11 tolerated(0.28) benign(0.275) TCGA-C5-A8XI-01 1 27226541 27226541 C T GPATCH3 Silent p.G131G 0.25 TCGA-C5-A8XI-01 1 32504170 32504170 C T KHDRBS1 Silent p.Y375Y 0.26 TCGA-C5-A8XI-01 1 6662016 6662016 G C KLHL21 Missense_Mutation p.L288V 0.09 deleterious(0.02) probably_damaging(0.914) TCGA-C5-A8XI-01 20 29634000 29634000 T C FRG1B 3'UTR 0.05 TCGA-C5-A8XI-01 20 43379406 43379406 C T KCNK15 Missense_Mutation p.S307L 0.38 deleterious_low_confidence(0.05) benign(0.06) TCGA-C5-A8XI-01 20 55033599 55033599 G A CASS4 Silent p.T719T 0.24 TCGA-C5-A8XI-01 2 11965296 11965296 G T LPIN1 3'Flank 0.20 TCGA-C5-A8XI-01 2 159107379 159107379 T C CCDC148 Missense_Mutation p.M386V 0.23 tolerated(0.18) benign(0.14) TCGA-C5-A8XI-01 2 21230020 21230020 G A APOB Silent p.D3240D 0.09 TCGA-C5-A8XI-01 2 239133936 239133936 C A AC016757.3 Silent p.P113P 0.65 TCGA-C5-A8XI-01 2 240981437 240981437 G A PRR21 Silent p.F321F 0.17 TCGA-C5-A8XI-01 2 24952647 24952647 G A NCOA1 Missense_Mutation p.R1055Q 0.26 deleterious(0) possibly_damaging(0.516) TCGA-C5-A8XI-01 2 45169896 45169896 G A SIX3 Missense_Mutation p.R218Q 0.27 deleterious(0) probably_damaging(1) TCGA-C5-A8XI-01 3 123386029 123386029 C A MYLK Missense_Mutation p.A1220S 0.38 tolerated(0.06) benign(0.012) TCGA-C5-A8XI-01 3 50153413 50153413 G A RBM5 Silent p.E698E 0.06 TCGA-C5-A8XI-01 4 16175888 16175888 G A TAPT1 Missense_Mutation p.T392I 0.07 deleterious(0.04) probably_damaging(0.993) TCGA-C5-A8XI-01 5 167868692 167868692 C T WWC1 Silent p.G762G 0.26 TCGA-C5-A8XI-01 5 39306841 39306841 C T C9 Missense_Mutation p.G432R 0.26 deleterious(0) probably_damaging(0.994) TCGA-C5-A8XI-01 5 67591115 67591123 CTTATCCAG - PIK3R1 In_Frame_Del p.I571_L573del 0.24 TCGA-C5-A8XI-01 5 70862019 70862019 A G BDP1 3'UTR 0.10 TCGA-C5-A8XI-01 5 85578580 85578580 C G NBPF22P RNA 0.21 TCGA-C5-A8XI-01 6 100895160 100895160 C T SIM1 Missense_Mutation p.V328I 0.09 tolerated(0.07) possibly_damaging(0.904) TCGA-C5-A8XI-01 6 138615233 138615233 G A KIAA1244 Missense_Mutation p.D1158N 0.21 tolerated(0.21) benign(0.021) TCGA-C5-A8XI-01 6 36169057 36169057 C T BRPF3 Missense_Mutation p.R320C 0.34 deleterious(0) probably_damaging(1) TCGA-C5-A8XI-01 7 154681018 154681018 G A DPP6 Missense_Mutation p.E781K 0.28 tolerated(0.24) benign(0.009) TCGA-C5-A8XI-01 7 71177055 71177055 G A WBSCR17 Missense_Mutation p.R574Q 0.32 tolerated(0.41) benign(0.066) TCGA-C5-A8XI-01 7 86577102 86577102 G A KIAA1324L Silent p.I149I 0.26 TCGA-C5-A8XI-01 8 113323227 113323227 G A CSMD3 Missense_Mutation p.A2622V 0.38 tolerated(0.2) benign(0.013) TCGA-C5-A8XI-01 8 136533530 136533530 G A KHDRBS3 Missense_Mutation p.D47N 0.05 deleterious(0.03) probably_damaging(0.984) TCGA-C5-A8XI-01 8 139727925 139727925 C A COL22A1 Missense_Mutation p.K839N 0.36 probably_damaging(0.981) TCGA-C5-A8XI-01 8 22380235 22380235 A T PPP3CC Missense_Mutation p.N306Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XI-01 8 41788230 41788230 A G KAT6A 3'UTR 0.18 TCGA-C5-A8XI-01 9 37425959 37425959 C T GRHPR Silent p.I85I 0.25 TCGA-C5-A8XI-01 X 114536619 114536619 C G LUZP4 Missense_Mutation p.Q52E 0.19 tolerated(0.46) possibly_damaging(0.728) TCGA-C5-A8XI-01 X 30718555 30718555 C G GK Missense_Mutation p.P252A 0.24 deleterious(0.02) probably_damaging(0.938) TCGA-C5-A8XI-01 X 48317079 48317079 C T SLC38A5 3'UTR 0.12 TCGA-C5-A8XI-01 X 48317085 48317085 T C SLC38A5 3'UTR 0.10 TCGA-C5-A8XI-01 X 5811265 5811265 C T NLGN4X Missense_Mutation p.G682R 0.45 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XI-01 X 77112326 77112326 C A MAGT1 Missense_Mutation p.L224F 0.25 tolerated(0.07) probably_damaging(0.979) TCGA-C5-A8XI-01 X 8998322 8998322 C G FAM9B Missense_Mutation p.L87F 0.25 tolerated(0.15) probably_damaging(0.996) TCGA-C5-A8XJ-01 10 101841375 101841375 T A CPN1 Missense_Mutation p.D3V 0.42 tolerated(0.07) probably_damaging(0.99) TCGA-C5-A8XJ-01 10 101841376 101841376 C T CPN1 Missense_Mutation p.D3N 0.42 tolerated(0.22) probably_damaging(0.977) TCGA-C5-A8XJ-01 10 104164995 104164995 C T PSD Missense_Mutation p.R781Q 0.52 deleterious(0) probably_damaging(0.909) TCGA-C5-A8XJ-01 10 1208563 1208563 G A LINC00200 RNA 0.34 TCGA-C5-A8XJ-01 10 124543871 124543871 C T DMBT1P1 RNA 0.33 TCGA-C5-A8XJ-01 10 134503917 134503917 C T INPP5A Missense_Mutation p.L110F 0.30 deleterious(0) probably_damaging(0.961) TCGA-C5-A8XJ-01 10 15161422 15161422 G A NMT2 Silent p.L364L 0.33 TCGA-C5-A8XJ-01 10 21823666 21823666 G C MLLT10 Missense_Mutation p.E31D 0.36 deleterious(0) probably_damaging(0.986) TCGA-C5-A8XJ-01 10 25465027 25465027 C G GPR158 Silent p.L226L 0.33 TCGA-C5-A8XJ-01 10 5948011 5948011 C G FBXO18 Missense_Mutation p.Q108E 0.39 deleterious(0.01) benign(0.281) TCGA-C5-A8XJ-01 10 63854611 63854611 A G ARID5B 3'UTR 0.19 TCGA-C5-A8XJ-01 10 69881300 69881300 G A MYPN Silent p.A35A 0.41 TCGA-C5-A8XJ-01 10 69934084 69934084 C T MYPN Silent p.F745F 0.37 TCGA-C5-A8XJ-01 10 69934344 69934344 C G MYPN Missense_Mutation p.S832C 0.38 deleterious(0) possibly_damaging(0.853) TCGA-C5-A8XJ-01 10 74094757 74094757 C T DNAJB12 3'UTR 0.50 TCGA-C5-A8XJ-01 10 75553949 75553949 G T ZSWIM8 Missense_Mutation p.K890N 0.23 deleterious(0) probably_damaging(0.996) TCGA-C5-A8XJ-01 10 7659085 7659085 C T ITIH5 Silent p.G271G 0.20 TCGA-C5-A8XJ-01 10 7751098 7751098 G A ITIH2 Silent p.Q102Q 0.24 TCGA-C5-A8XJ-01 10 93258655 93258655 C G HECTD2 Missense_Mutation p.I594M 0.13 deleterious(0.04) benign(0.063) TCGA-C5-A8XJ-01 11 117392075 117392075 A C DSCAML1 Missense_Mutation p.I388S 0.57 tolerated(0.07) benign(0.373) TCGA-C5-A8XJ-01 11 118342710 118342710 C T KMT2A Missense_Mutation p.S279F 0.60 probably_damaging(0.982) TCGA-C5-A8XJ-01 11 118342821 118342821 C T KMT2A Missense_Mutation p.S316L 0.58 benign(0.026) TCGA-C5-A8XJ-01 11 118894156 118894156 G A TRAPPC4 3'UTR 0.38 TCGA-C5-A8XJ-01 11 118895514 118895514 G A SLC37A4 3'UTR 0.56 TCGA-C5-A8XJ-01 11 1268273 1268273 C T MUC5B Missense_Mutation p.P3388L 0.26 unknown(0) TCGA-C5-A8XJ-01 11 18637223 18637223 C T SPTY2D1 Missense_Mutation p.E200K 0.58 deleterious(0.05) benign(0.292) TCGA-C5-A8XJ-01 11 18739626 18739626 C T IGSF22 Silent p.L275L 0.58 TCGA-C5-A8XJ-01 11 22833901 22833901 C G GAS2 3'UTR 0.44 TCGA-C5-A8XJ-01 11 2356729 2356729 C A CD81-AS1 Intron 0.52 TCGA-C5-A8XJ-01 11 55110916 55110916 G A OR4A16 Missense_Mutation p.M80I 0.35 tolerated_low_confidence(1) benign(0) TCGA-C5-A8XJ-01 11 55904497 55904497 C A OR8J3 Missense_Mutation p.G233V 0.14 deleterious(0) probably_damaging(1) TCGA-C5-A8XJ-01 11 57971111 57971111 G A OR1S2 Silent p.F181F 0.11 TCGA-C5-A8XJ-01 11 58893367 58893367 G T FAM111B Missense_Mutation p.L599F 0.25 tolerated(0.36) benign(0.021) TCGA-C5-A8XJ-01 11 61547013 61547015 AAG - MYRF In_Frame_Del p.K741del 0.24 TCGA-C5-A8XJ-01 11 64662399 64662399 C T ATG2A 3'UTR 0.13 TCGA-C5-A8XJ-01 11 64956087 64956087 C T CAPN1 Silent p.F345F 0.31 TCGA-C5-A8XJ-01 11 65726424 65726424 C T SART1 5'Flank 0.32 TCGA-C5-A8XJ-01 11 66064054 66064054 G A TMEM151A 3'UTR 0.24 TCGA-C5-A8XJ-01 11 66802295 66802295 G C SYT12 Missense_Mutation p.E72Q 0.32 tolerated_low_confidence(0.12) benign(0.002) TCGA-C5-A8XJ-01 11 67048581 67048581 C T ADRBK1 Silent p.F191F 0.29 TCGA-C5-A8XJ-01 11 7650762 7650762 C T PPFIBP2 Nonsense_Mutation p.Q321* 0.42 TCGA-C5-A8XJ-01 11 76886483 76886483 G C MYO7A Missense_Mutation p.Q720H 0.56 deleterious(0) possibly_damaging(0.678) TCGA-C5-A8XJ-01 11 76886507 76886507 G A MYO7A Silent p.L728L 0.60 TCGA-C5-A8XJ-01 11 82643589 82643589 C T C11orf82 Silent p.S403S 0.07 TCGA-C5-A8XJ-01 11 85396131 85396131 G C CCDC89 Missense_Mutation p.S348C 0.79 deleterious(0.04) probably_damaging(0.939) TCGA-C5-A8XJ-01 12 10124133 10124133 C G CLEC12A Intron 0.36 TCGA-C5-A8XJ-01 12 109181925 109181925 C T SSH1 Missense_Mutation p.D997N 0.34 tolerated_low_confidence(0.09) benign(0.027) TCGA-C5-A8XJ-01 12 113556985 113556985 C T RASAL1 Missense_Mutation p.R197Q 0.44 tolerated(0.31) benign(0.203) TCGA-C5-A8XJ-01 12 117603295 117603295 C T FBXO21 Missense_Mutation p.E441K 0.22 deleterious(0.02) benign(0.169) TCGA-C5-A8XJ-01 12 121132662 121132662 G A MLEC Silent p.V150V 0.26 TCGA-C5-A8XJ-01 12 122962440 122962440 C T ZCCHC8 Silent p.Q431Q 0.45 TCGA-C5-A8XJ-01 12 122962795 122962795 C T ZCCHC8 Silent p.Q395Q 0.45 TCGA-C5-A8XJ-01 12 131649667 131649667 G T RP11-638F5.1 RNA 0.35 TCGA-C5-A8XJ-01 12 1904467 1904467 C G CACNA2D4 Missense_Mutation p.E1103Q 0.42 tolerated(0.1) benign(0.027) TCGA-C5-A8XJ-01 12 25047257 25047257 C T BCAT1 Silent p.Q89Q 0.43 TCGA-C5-A8XJ-01 12 25054783 25054783 C G BCAT1 Missense_Mutation p.E27Q 0.44 tolerated(0.36) benign(0.031) TCGA-C5-A8XJ-01 12 26551906 26551906 C T ITPR2 Silent p.L2533L 0.38 TCGA-C5-A8XJ-01 12 31256532 31256557 AGGATTTTGCCAGCGTAGTGCTCCTG - DDX11 Frame_Shift_Del p.G852Tfs*100 0.20 TCGA-C5-A8XJ-01 12 40265673 40265673 G C SLC2A13 Missense_Mutation p.F375L 0.38 deleterious(0) possibly_damaging(0.836) TCGA-C5-A8XJ-01 12 41323765 41323765 G A CNTN1 Missense_Mutation p.V222M 0.23 deleterious(0) probably_damaging(1) TCGA-C5-A8XJ-01 12 47629014 47629014 C T PCED1B Silent p.F56F 0.25 TCGA-C5-A8XJ-01 12 48140514 48140514 C T RAPGEF3 Intron 0.44 TCGA-C5-A8XJ-01 12 48238588 48238588 C G VDR Missense_Mutation p.E459Q 0.36 tolerated(0.32) possibly_damaging(0.791) TCGA-C5-A8XJ-01 12 48375574 48375574 A T COL2A1 Silent p.G798G 0.38 TCGA-C5-A8XJ-01 12 51127936 51127936 C T DIP2B Missense_Mutation p.P1334S 0.34 tolerated(0.13) probably_damaging(0.944) TCGA-C5-A8XJ-01 12 51138379 51138379 C T DIP2B Silent p.F1496F 0.36 TCGA-C5-A8XJ-01 12 51733770 51733770 C T CELA1 Silent p.Q161Q 0.29 TCGA-C5-A8XJ-01 12 52713128 52713128 C T KRT83 Silent p.Q135Q 0.34 TCGA-C5-A8XJ-01 12 53900848 53900848 C G RP11-793H13.10 Missense_Mutation p.G438A 0.73 tolerated_low_confidence(1) probably_damaging(0.969) TCGA-C5-A8XJ-01 12 56744644 56744644 C T STAT2 Missense_Mutation p.E355K 0.30 tolerated(0.14) benign(0.044) TCGA-C5-A8XJ-01 12 66610994 66610994 C T IRAK3 Missense_Mutation p.S211F 0.21 deleterious(0) probably_damaging(0.983) TCGA-C5-A8XJ-01 12 69969422 69969422 C T FRS2 3'UTR 0.42 TCGA-C5-A8XJ-01 12 70983952 70983952 C T PTPRB Silent p.V614V 0.44 TCGA-C5-A8XJ-01 12 72091149 72091149 G A TMEM19 Missense_Mutation p.E158K 0.37 deleterious(0) benign(0.014) TCGA-C5-A8XJ-01 12 78574684 78574684 C T NAV3 Missense_Mutation p.R1829W 0.27 deleterious(0) probably_damaging(1) TCGA-C5-A8XJ-01 12 81657112 81657112 C T PPFIA2 Missense_Mutation p.E1205K 0.52 deleterious_low_confidence(0) benign(0.381) TCGA-C5-A8XJ-01 12 9089540 9089540 C T PHC1 Silent p.C819C 0.18 TCGA-C5-A8XJ-01 12 97150283 97150283 C T C12orf55 Nonsense_Mutation p.Q2630* 0.33 TCGA-C5-A8XJ-01 13 110438182 110438182 G C IRS2 Silent p.L73L 0.69 TCGA-C5-A8XJ-01 13 20577201 20577201 C A ZMYM2 Silent p.L353L 0.24 TCGA-C5-A8XJ-01 13 24860354 24860354 G A SPATA13 Silent p.L768L 0.41 TCGA-C5-A8XJ-01 13 24895175 24895175 C G C1QTNF9 Missense_Mutation p.Q91E 0.18 tolerated(0.44) benign(0.05) TCGA-C5-A8XJ-01 13 41133134 41133134 C T FOXO1 3'UTR 0.51 TCGA-C5-A8XJ-01 13 41949781 41949781 G C NAA16 3'UTR 0.29 TCGA-C5-A8XJ-01 13 45580434 45580434 C T GPALPP1 Missense_Mutation p.P107S 0.50 tolerated(0.55) benign(0.018) TCGA-C5-A8XJ-01 13 50260722 50260722 C T EBPL Intron 0.78 TCGA-C5-A8XJ-01 13 61141665 61141665 G A TDRD3 Missense_Mutation p.E709K 0.56 deleterious(0.03) possibly_damaging(0.46) TCGA-C5-A8XJ-01 13 76414531 76414531 C T LMO7 Missense_Mutation p.P928L 0.47 tolerated(0.07) probably_damaging(0.998) TCGA-C5-A8XJ-01 14 104638057 104638057 C T KIF26A Intron 0.27 TCGA-C5-A8XJ-01 14 20937664 20937664 G A PNP 5'UTR 0.46 TCGA-C5-A8XJ-01 14 21990815 21990815 G C SALL2 3'UTR 0.47 TCGA-C5-A8XJ-01 14 23310774 23310774 C T MMP14 Silent p.L61L 0.33 TCGA-C5-A8XJ-01 14 23598958 23598958 G A SLC7A8 Silent p.I388I 0.16 TCGA-C5-A8XJ-01 14 24532648 24532648 C G LRRC16B Missense_Mutation p.S962C 0.73 tolerated(0.06) possibly_damaging(0.788) TCGA-C5-A8XJ-01 14 32030639 32030639 C T NUBPL 5'UTR 0.20 TCGA-C5-A8XJ-01 14 32030716 32030716 C A NUBPL Missense_Mutation p.P24Q 0.22 tolerated_low_confidence(0.33) benign(0.011) TCGA-C5-A8XJ-01 14 35270315 35270315 C G BAZ1A Missense_Mutation p.E316Q 0.42 tolerated(0.13) benign(0.403) TCGA-C5-A8XJ-01 14 39867083 39867083 G A FBXO33 3'UTR 0.54 TCGA-C5-A8XJ-01 14 50736035 50736035 C T L2HGDH Missense_Mutation p.R251Q 0.41 tolerated(0.38) benign(0.015) TCGA-C5-A8XJ-01 14 53324985 53324985 C T FERMT2 3'UTR 0.26 TCGA-C5-A8XJ-01 14 57877243 57877243 G C NAA30 3'UTR 0.36 TCGA-C5-A8XJ-01 14 58701239 58701239 G A ACTR10 Silent p.L408L 0.47 TCGA-C5-A8XJ-01 14 62203736 62203736 C G HIF1A Silent p.L410L 0.37 TCGA-C5-A8XJ-01 14 64991474 64991474 C T ZBTB1 3'UTR 0.27 TCGA-C5-A8XJ-01 14 64991550 64991550 C T ZBTB1 3'UTR 0.31 TCGA-C5-A8XJ-01 14 64991600 64991600 C G ZBTB1 3'UTR 0.28 TCGA-C5-A8XJ-01 14 71267547 71267547 G T MAP3K9 Silent p.V219V 0.36 TCGA-C5-A8XJ-01 14 75265017 75265017 G A YLPM1 Missense_Mutation p.R1006K 0.39 benign(0.069) TCGA-C5-A8XJ-01 14 94053246 94053246 G T UNC79 Missense_Mutation p.L831F 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-C5-A8XJ-01 14 95579464 95579464 G A DICER1 Silent p.L669L 0.43 TCGA-C5-A8XJ-01 15 23890660 23890660 C T MAGEL2 Missense_Mutation p.A141T 0.46 deleterious_low_confidence(0.04) benign(0.008) TCGA-C5-A8XJ-01 15 31294033 31294033 C T TRPM1 Missense_Mutation p.E1641K 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-C5-A8XJ-01 15 43748161 43748161 G C TP53BP1 Nonsense_Mutation p.S882* 0.35 TCGA-C5-A8XJ-01 15 65032736 65032736 G C RBPMS2 3'UTR 0.32 TCGA-C5-A8XJ-01 15 65347596 65347596 C G RASL12 Missense_Mutation p.E148Q 0.32 deleterious(0.05) benign(0.154) TCGA-C5-A8XJ-01 15 72104319 72104319 G A NR2E3 RNA 0.50 TCGA-C5-A8XJ-01 15 72492081 72492081 G A PKM Silent p.F502F 0.12 TCGA-C5-A8XJ-01 15 72492954 72492954 G C PKM Missense_Mutation p.I450M 0.29 deleterious(0.03) possibly_damaging(0.845) TCGA-C5-A8XJ-01 15 89719224 89719224 G A ABHD2 Silent p.L240L 0.39 TCGA-C5-A8XJ-01 16 15718765 15718765 G A KIAA0430 Nonsense_Mutation p.R711* 0.37 TCGA-C5-A8XJ-01 16 2012437 2012437 G C RPS2 Intron 0.50 TCGA-C5-A8XJ-01 16 20432677 20432677 G A ACSM5 Missense_Mutation p.E241K 0.41 tolerated(0.47) benign(0.317) TCGA-C5-A8XJ-01 16 21145625 21145625 G A DNAH3 Missense_Mutation p.T346M 0.35 tolerated(0.05) benign(0.028) TCGA-C5-A8XJ-01 16 2226655 2226655 C G TRAF7 3'UTR 0.25 TCGA-C5-A8XJ-01 16 28997946 28997946 G A LAT Intron 0.32 TCGA-C5-A8XJ-01 16 3077628 3077628 G C THOC6 Silent p.L332L 0.45 TCGA-C5-A8XJ-01 16 3081333 3081333 G C CCDC64B Intron 0.50 TCGA-C5-A8XJ-01 16 3081401 3081401 G C CCDC64B Intron 0.30 TCGA-C5-A8XJ-01 16 48145690 48145690 G C ABCC12 Missense_Mutation p.F707L 0.33 tolerated(0.65) benign(0.001) TCGA-C5-A8XJ-01 16 52472950 52472950 C G TOX3 3'UTR 0.47 TCGA-C5-A8XJ-01 16 56782220 56782220 G A NUP93 Missense_Mutation p.E21K 0.25 deleterious(0.02) benign(0.205) TCGA-C5-A8XJ-01 16 67263747 67263747 G A FHOD1 Missense_Mutation p.R1121C 0.32 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XJ-01 16 676099 676099 G A RAB40C Silent p.E181E 0.53 TCGA-C5-A8XJ-01 16 68279276 68279276 G A PLA2G15 5'UTR 0.44 TCGA-C5-A8XJ-01 16 836840 836840 C T RPUSD1 Silent p.L166L 0.40 TCGA-C5-A8XJ-01 16 87445793 87445793 G A ZCCHC14 Missense_Mutation p.S708F 0.31 deleterious(0.01) possibly_damaging(0.851) TCGA-C5-A8XJ-01 16 88926070 88926070 G A TRAPPC2L Splice_Site p.X69_splice 0.36 TCGA-C5-A8XJ-01 16 89764660 89764660 G T SPATA2L Silent p.L119L 0.25 TCGA-C5-A8XJ-01 17 10293866 10293866 C G MYH8 Missense_Mutation p.E1907Q 0.62 deleterious(0.01) benign(0.126) TCGA-C5-A8XJ-01 17 10435187 10435187 G C MYH2 Missense_Mutation p.I820M 0.47 deleterious(0) possibly_damaging(0.695) TCGA-C5-A8XJ-01 17 27909018 27909018 C T GIT1 Missense_Mutation p.E184K 0.24 deleterious(0) probably_damaging(0.996) TCGA-C5-A8XJ-01 17 30498106 30498106 G C RHOT1 Missense_Mutation p.E28Q 0.29 deleterious(0.03) possibly_damaging(0.646) TCGA-C5-A8XJ-01 17 30816299 30816299 G C CDK5R1 3'UTR 0.62 TCGA-C5-A8XJ-01 17 36634070 36634070 C T ARHGAP23 Missense_Mutation p.A790V 0.22 deleterious(0) probably_damaging(0.985) TCGA-C5-A8XJ-01 17 37360887 37360887 G A RPL19 Missense_Mutation p.E193K 0.35 deleterious(0.04) possibly_damaging(0.815) TCGA-C5-A8XJ-01 17 37566452 37566452 G A MED1 Silent p.G674G 0.47 TCGA-C5-A8XJ-01 17 39670270 39670270 G A KRT15 3'UTR 0.16 TCGA-C5-A8XJ-01 17 39915069 39915070 - G JUP Frame_Shift_Ins p.L518Afs*93 0.16 TCGA-C5-A8XJ-01 17 40257113 40257113 C T DHX58 Missense_Mutation p.E442K 0.58 deleterious(0.02) possibly_damaging(0.856) TCGA-C5-A8XJ-01 17 41290707 41290707 C T NBR2 RNA 0.27 TCGA-C5-A8XJ-01 17 43221052 43221052 C G ACBD4 3'UTR 0.23 TCGA-C5-A8XJ-01 17 43893883 43893883 C A CRHR1 Missense_Mutation p.P59H 0.17 deleterious(0.01) possibly_damaging(0.806) TCGA-C5-A8XJ-01 17 44108774 44108774 C G KANSL1 3'UTR 0.30 TCGA-C5-A8XJ-01 17 44833271 44833271 G C NSF 3'UTR 0.29 TCGA-C5-A8XJ-01 17 46805949 46805949 G A HOXB13 Missense_Mutation p.P3S 0.28 tolerated_low_confidence(0.09) benign(0.004) TCGA-C5-A8XJ-01 17 47782549 47782549 C T SLC35B1 Missense_Mutation p.M155I 0.60 tolerated(0.08) benign(0.2) TCGA-C5-A8XJ-01 17 48545800 48545800 C T CHAD Silent p.L125L 0.16 TCGA-C5-A8XJ-01 17 48546040 48546040 C A CHAD Missense_Mutation p.K45N 0.32 tolerated(0.18) possibly_damaging(0.834) TCGA-C5-A8XJ-01 17 53402337 53402337 C T HLF 3'UTR 0.55 TCGA-C5-A8XJ-01 17 57189291 57189291 G C SKA2 3'UTR 0.15 TCGA-C5-A8XJ-01 17 57189432 57189432 G A SKA2 3'UTR 0.12 TCGA-C5-A8XJ-01 17 60814774 60814774 C T MARCH10 Intron 0.18 TCGA-C5-A8XJ-01 17 61790786 61790786 C G STRADA Missense_Mutation p.E110Q 0.09 deleterious(0.05) probably_damaging(0.944) TCGA-C5-A8XJ-01 17 63685318 63685318 C A CEP112 Nonsense_Mutation p.E876* 0.14 TCGA-C5-A8XJ-01 17 73739922 73739922 G A ITGB4 Missense_Mutation p.G1031S 0.56 tolerated(0.28) benign(0.008) TCGA-C5-A8XJ-01 17 78073693 78073693 C T CCDC40 3'UTR 0.67 TCGA-C5-A8XJ-01 17 96955 96955 C T RPH3AL Missense_Mutation p.R187Q 0.56 tolerated(0.79) benign(0.001) TCGA-C5-A8XJ-01 18 44036557 44036557 C T RNF165 Silent p.I333I 0.25 TCGA-C5-A8XJ-01 18 5233131 5233131 C T RP11-835E18.5 RNA 0.24 TCGA-C5-A8XJ-01 18 56586878 56586878 C T ZNF532 Silent p.L453L 0.23 TCGA-C5-A8XJ-01 18 56825913 56825913 C T SEC11C Missense_Mutation p.S192F 0.37 deleterious(0) possibly_damaging(0.556) TCGA-C5-A8XJ-01 18 74208358 74208358 G A RP11-17M16.1 Missense_Mutation p.G68S 0.22 tolerated_low_confidence(0.16) probably_damaging(0.935) TCGA-C5-A8XJ-01 18 77474817 77474817 G C CTDP1 Missense_Mutation p.D453H 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-C5-A8XJ-01 19 10108787 10108787 C T COL5A3 Silent p.V383V 0.32 TCGA-C5-A8XJ-01 19 1105403 1105403 G A GPX4 Nonsense_Mutation p.Sec73* 0.33 TCGA-C5-A8XJ-01 19 11303722 11303722 G T KANK2 Missense_Mutation p.T345K 0.15 tolerated(0.15) possibly_damaging(0.843) TCGA-C5-A8XJ-01 19 11594457 11594457 G A ZNF653 3'UTR 0.42 TCGA-C5-A8XJ-01 19 1207118 1207118 C T STK11 Missense_Mutation p.S69L 0.26 tolerated(0.1) benign(0.035) TCGA-C5-A8XJ-01 19 12244235 12244235 C T ZNF20 Missense_Mutation p.E256K 0.20 tolerated(0.24) benign(0.079) TCGA-C5-A8XJ-01 19 12444474 12444474 G A ZNF563 5'UTR 0.37 TCGA-C5-A8XJ-01 19 12501489 12501489 G T ZNF799 Missense_Mutation p.L575I 0.45 tolerated(0.07) benign(0.165) TCGA-C5-A8XJ-01 19 1578432 1578432 C T MBD3 Silent p.P261P 0.37 TCGA-C5-A8XJ-01 19 17937705 17937705 C T JAK3 Missense_Mutation p.M1074I 0.45 deleterious(0.04) benign(0.068) TCGA-C5-A8XJ-01 19 2118683 2118683 C T AP3D1 Missense_Mutation p.E544K 0.30 tolerated(0.12) benign(0.064) TCGA-C5-A8XJ-01 19 24309232 24309232 C T ZNF254 Nonsense_Mutation p.Q144* 0.38 TCGA-C5-A8XJ-01 19 35176633 35176633 G A ZNF302 3'UTR 0.38 TCGA-C5-A8XJ-01 19 38904112 38904112 G A RASGRP4 Silent p.L411L 0.41 TCGA-C5-A8XJ-01 19 39959477 39959477 C G SUPT5H Missense_Mutation p.F373L 0.23 tolerated(0.06) benign(0.004) TCGA-C5-A8XJ-01 19 40521453 40521453 G A ZNF546 Missense_Mutation p.R759H 0.33 tolerated(0.21) possibly_damaging(0.812) TCGA-C5-A8XJ-01 19 41510019 41510021 CTC TT CYP2B6 Frame_Shift_Del p.S96Lfs*18 0.22 TCGA-C5-A8XJ-01 19 43382152 43382152 C G PSG1 Missense_Mutation p.E115Q 0.28 tolerated(0.25) benign(0.037) TCGA-C5-A8XJ-01 19 47231235 47231235 G A STRN4 Silent p.L357L 0.24 TCGA-C5-A8XJ-01 19 48807304 48807304 C G CCDC114 Missense_Mutation p.Q216H 0.35 deleterious(0.04) possibly_damaging(0.608) TCGA-C5-A8XJ-01 19 49910191 49910191 G C CCDC155 Missense_Mutation p.E283Q 0.23 deleterious(0.03) benign(0.379) TCGA-C5-A8XJ-01 19 49990803 49990803 C T RPL13A 5'Flank 0.36 TCGA-C5-A8XJ-01 19 50764744 50764744 G C MYH14 Missense_Mutation p.E813Q 0.40 deleterious(0.03) benign(0.074) TCGA-C5-A8XJ-01 19 5144094 5144094 C A KDM4B Silent p.L889L 0.28 TCGA-C5-A8XJ-01 19 55048170 55048170 C G KIR3DX1 Missense_Mutation p.S246C 0.31 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XJ-01 19 55048179 55048179 C A KIR3DX1 Nonsense_Mutation p.S249* 0.29 TCGA-C5-A8XJ-01 19 56244054 56244054 C G NLRP9 Missense_Mutation p.Q381H 0.20 tolerated(0.07) benign(0.428) TCGA-C5-A8XJ-01 19 58806903 58806903 G A ZNF8 3'UTR 0.39 TCGA-C5-A8XJ-01 19 830819 830819 C T AZU1 Missense_Mutation p.R158C 0.08 deleterious(0.01) possibly_damaging(0.606) TCGA-C5-A8XJ-01 19 8563120 8563120 C T PRAM1 Missense_Mutation p.E496K 0.23 tolerated(0.72) benign(0.007) TCGA-C5-A8XJ-01 19 8591785 8591785 C T MYO1F Missense_Mutation p.D837N 0.52 tolerated(0.87) benign(0.001) TCGA-C5-A8XJ-01 19 8669987 8669987 C T ADAMTS10 Silent p.Q115Q 0.33 TCGA-C5-A8XJ-01 1 101343096 101343096 G C EXTL2 Missense_Mutation p.F123L 0.33 tolerated(0.11) possibly_damaging(0.481) TCGA-C5-A8XJ-01 1 102268971 102268971 C T OLFM3 3'UTR 0.27 TCGA-C5-A8XJ-01 1 110889106 110889106 G A RBM15 3'UTR 0.35 TCGA-C5-A8XJ-01 1 12954877 12954877 C G PRAMEF10 Missense_Mutation p.E136Q 0.34 tolerated(0.17) benign(0.187) TCGA-C5-A8XJ-01 1 12955433 12955433 C G PRAMEF10 Silent p.L82L 0.35 TCGA-C5-A8XJ-01 1 145510670 145510670 G A RBM8A 3'UTR 0.26 TCGA-C5-A8XJ-01 1 147230810 147230810 C T GJA5 Silent p.L179L 0.43 TCGA-C5-A8XJ-01 1 150956865 150956865 C G ANXA9 Missense_Mutation p.L126V 0.29 tolerated(0.07) possibly_damaging(0.673) TCGA-C5-A8XJ-01 1 154192315 154192315 G T C1orf43 Silent p.P55P 0.44 TCGA-C5-A8XJ-01 1 155031241 155031241 G A ADAM15 Missense_Mutation p.R658Q 0.30 tolerated(0.23) benign(0.048) TCGA-C5-A8XJ-01 1 155917209 155917209 G A ARHGEF2 3'UTR 0.31 TCGA-C5-A8XJ-01 1 156231134 156231134 G A SMG5 Silent p.L699L 0.36 TCGA-C5-A8XJ-01 1 156616852 156616852 C T BCAN Silent p.L117L 0.31 TCGA-C5-A8XJ-01 1 156617311 156617311 C T BCAN Missense_Mutation p.L160F 0.30 tolerated(0.18) probably_damaging(1) TCGA-C5-A8XJ-01 1 160396219 160396219 C T VANGL2 3'UTR 0.36 TCGA-C5-A8XJ-01 1 165551106 165551106 G T RP11-280O1.2 RNA 0.37 TCGA-C5-A8XJ-01 1 166819192 166819192 G C POGK Missense_Mutation p.G459A 0.38 deleterious(0) probably_damaging(0.995) TCGA-C5-A8XJ-01 1 169101963 169101963 C T NME7 3'UTR 0.25 TCGA-C5-A8XJ-01 1 175129897 175129897 G A KIAA0040 Nonsense_Mutation p.Q85* 0.33 TCGA-C5-A8XJ-01 1 181059138 181059138 G A IER5 3'UTR 0.42 TCGA-C5-A8XJ-01 1 183529336 183529336 G A NCF2 Nonsense_Mutation p.Q455* 0.31 TCGA-C5-A8XJ-01 1 186375345 186375345 G A C1orf27 Missense_Mutation p.M377I 0.27 tolerated(0.12) benign(0.025) TCGA-C5-A8XJ-01 1 186415580 186415580 G C PDC Nonsense_Mutation p.S64* 0.18 TCGA-C5-A8XJ-01 1 201782301 201782301 T C NAV1 Missense_Mutation p.I1752T 0.05 deleterious(0.01) possibly_damaging(0.457) TCGA-C5-A8XJ-01 1 201790259 201790259 G C NAV1 3'UTR 0.55 TCGA-C5-A8XJ-01 1 204590884 204590884 G C LRRN2 5'UTR 0.37 TCGA-C5-A8XJ-01 1 228194814 228194814 G A WNT3A 5'UTR 0.64 TCGA-C5-A8XJ-01 1 2283216 2283216 A G MORN1 Intron 0.37 TCGA-C5-A8XJ-01 1 229772032 229772032 A T URB2 Missense_Mutation p.S558C 0.25 deleterious(0.02) benign(0.436) TCGA-C5-A8XJ-01 1 230883410 230883410 C G CAPN9 Missense_Mutation p.F56L 0.22 tolerated(0.2) possibly_damaging(0.505) TCGA-C5-A8XJ-01 1 231501840 231501840 G C EGLN1 3'UTR 0.27 TCGA-C5-A8XJ-01 1 232650279 232650279 C T SIPA1L2 Silent p.L269L 0.33 TCGA-C5-A8XJ-01 1 24192056 24192056 G C FUCA1 Missense_Mutation p.S150C 0.21 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XJ-01 1 245771036 245771036 C T KIF26B Silent p.H547H 0.45 TCGA-C5-A8XJ-01 1 246714551 246714551 G C TFB2M Missense_Mutation p.I253M 0.27 deleterious(0) benign(0.234) TCGA-C5-A8XJ-01 1 247612207 247612207 C G NLRP3 3'Flank 0.31 TCGA-C5-A8XJ-01 1 28696218 28696218 C T PHACTR4 5'UTR 0.47 TCGA-C5-A8XJ-01 1 32150170 32150170 G C COL16A1 Nonsense_Mutation p.S705* 0.24 TCGA-C5-A8XJ-01 1 33236081 33236081 C T KIAA1522 Missense_Mutation p.S434F 0.37 deleterious(0) unknown(0) TCGA-C5-A8XJ-01 1 33236208 33236208 C T KIAA1522 Silent p.L476L 0.38 TCGA-C5-A8XJ-01 1 36385143 36385143 C T AGO1 Missense_Mutation p.P837S 0.38 tolerated(0.39) probably_damaging(0.999) TCGA-C5-A8XJ-01 1 36386194 36386194 C G AGO1 3'UTR 0.42 TCGA-C5-A8XJ-01 1 36386213 36386213 C G AGO1 3'UTR 0.43 TCGA-C5-A8XJ-01 1 39812703 39812703 G C MACF1 Intron 0.50 TCGA-C5-A8XJ-01 1 39818720 39818720 C T MACF1 Silent p.I1685I 0.39 TCGA-C5-A8XJ-01 1 41945027 41945027 C T EDN2 3'UTR 0.35 TCGA-C5-A8XJ-01 1 41945029 41945029 C A EDN2 3'UTR 0.33 TCGA-C5-A8XJ-01 1 46088020 46088020 C A CCDC17 Missense_Mutation p.G287V 0.28 deleterious(0.02) probably_damaging(0.964) TCGA-C5-A8XJ-01 1 51875243 51875243 C G EPS15 Missense_Mutation p.K413N 0.43 tolerated(1) benign(0.001) TCGA-C5-A8XJ-01 1 53755330 53755330 G A LRP8 Silent p.T92T 0.35 TCGA-C5-A8XJ-01 1 6252998 6252998 G C RPL22 Missense_Mutation p.F78L 0.20 tolerated(0.12) benign(0.077) TCGA-C5-A8XJ-01 1 762101 762101 C G LINC00115 RNA 0.43 TCGA-C5-A8XJ-01 1 762861 762861 C T LINC00115 RNA 0.38 TCGA-C5-A8XJ-01 1 84383373 84383373 C T TTLL7 Missense_Mutation p.E501K 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-C5-A8XJ-01 1 85136450 85136450 G C SSX2IP Nonsense_Mutation p.S31* 0.38 TCGA-C5-A8XJ-01 1 86622086 86622086 G A COL24A1 5'UTR 0.28 TCGA-C5-A8XJ-01 1 89650966 89650966 C G GBP4 Missense_Mutation p.G632R 0.21 tolerated_low_confidence(0.06) benign(0.03) TCGA-C5-A8XJ-01 1 89651077 89651077 C G GBP4 Missense_Mutation p.E595Q 0.31 tolerated(0.22) benign(0.032) TCGA-C5-A8XJ-01 1 911980 911980 G A C1orf170 Missense_Mutation p.S631L 0.28 deleterious(0.01) possibly_damaging(0.611) TCGA-C5-A8XJ-01 1 98186411 98186411 G C DPYD Intron 0.28 TCGA-C5-A8XJ-01 20 1161751 1161751 G A TMEM74B Missense_Mutation p.S171F 0.33 deleterious(0) probably_damaging(0.991) TCGA-C5-A8XJ-01 20 11905288 11905288 C T BTBD3 3'UTR 0.32 TCGA-C5-A8XJ-01 20 18474623 18474623 G A RBBP9 Missense_Mutation p.S76F 0.22 deleterious(0) probably_damaging(1) TCGA-C5-A8XJ-01 20 31238489 31238489 G C C20orf203 RNA 0.19 TCGA-C5-A8XJ-01 20 32212610 32212610 G A CBFA2T2 Missense_Mutation p.E254K 0.18 tolerated(0.06) benign(0.104) TCGA-C5-A8XJ-01 20 34528918 34528918 C T PHF20 Missense_Mutation p.L949F 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A8XJ-01 20 35422994 35422994 G A SOGA1 Missense_Mutation p.S1164F 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-C5-A8XJ-01 20 35563455 35563455 G C SAMHD1 Missense_Mutation p.H162Q 0.45 deleterious(0) probably_damaging(0.997) TCGA-C5-A8XJ-01 20 37357240 37357240 C T SLC32A1 Silent p.L512L 0.57 TCGA-C5-A8XJ-01 20 37617501 37617501 G A DHX35 Missense_Mutation p.E131K 0.18 deleterious(0.04) possibly_damaging(0.717) TCGA-C5-A8XJ-01 20 42788539 42788539 C T JPH2 Silent p.K296K 0.14 TCGA-C5-A8XJ-01 20 42973924 42973924 C T R3HDML Missense_Mutation p.R179W 0.25 deleterious(0) probably_damaging(0.987) TCGA-C5-A8XJ-01 20 43356367 43356367 G A WISP2 3'UTR 0.43 TCGA-C5-A8XJ-01 20 47862923 47862923 C T ZNFX1 3'UTR 0.16 TCGA-C5-A8XJ-01 20 55033557 55033557 G C CASS4 Missense_Mutation p.Q705H 0.20 tolerated(0.6) benign(0.074) TCGA-C5-A8XJ-01 20 55213650 55213650 C G TFAP2C 3'UTR 0.21 TCGA-C5-A8XJ-01 20 55214076 55214076 C T TFAP2C 3'UTR 0.27 TCGA-C5-A8XJ-01 20 57569281 57569281 G A NELFCD Silent p.V584V 0.20 TCGA-C5-A8XJ-01 20 6022781 6022781 G A LRRN4 Silent p.L370L 0.37 TCGA-C5-A8XJ-01 20 60903025 60903025 G A LAMA5 Missense_Mutation p.S1565F 0.44 possibly_damaging(0.884) TCGA-C5-A8XJ-01 20 61834880 61834880 G C YTHDF1 Missense_Mutation p.Q138E 0.22 deleterious(0.04) benign(0.146) TCGA-C5-A8XJ-01 20 62271433 62271433 G C STMN3 3'UTR 0.36 TCGA-C5-A8XJ-01 20 62572575 62572575 G A UCKL1 Intron 0.19 TCGA-C5-A8XJ-01 20 7864303 7864303 C G HAO1 Missense_Mutation p.Q350H 0.48 tolerated(0.15) benign(0.004) TCGA-C5-A8XJ-01 21 28214874 28214874 C T ADAMTS1 Silent p.S287S 0.61 TCGA-C5-A8XJ-01 21 30357048 30357048 C T LTN1 Missense_Mutation p.E227K 0.38 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XJ-01 21 34897137 34897137 C T GART Missense_Mutation p.E413K 0.39 tolerated(0.33) benign(0.008) TCGA-C5-A8XJ-01 21 42769575 42769575 G A MX2 Missense_Mutation p.R369Q 0.19 tolerated(0.29) possibly_damaging(0.632) TCGA-C5-A8XJ-01 21 43892914 43892914 C T RSPH1 3'UTR 0.50 TCGA-C5-A8XJ-01 21 43892924 43892924 C T RSPH1 3'UTR 0.41 TCGA-C5-A8XJ-01 21 46011176 46011176 G A KRTAP10-6 3'UTR 0.23 TCGA-C5-A8XJ-01 22 18379016 18379016 C T MICAL3 Missense_Mutation p.E440K 0.48 probably_damaging(0.927) TCGA-C5-A8XJ-01 22 19512637 19512637 T A CLDN5 Intron 0.16 TCGA-C5-A8XJ-01 22 20458871 20458871 C T RIMBP3 Missense_Mutation p.D811N 0.47 deleterious(0) probably_damaging(0.979) TCGA-C5-A8XJ-01 22 21067628 21067628 C T PI4KA Missense_Mutation p.D1838N 0.33 tolerated(0.23) benign(0.002) TCGA-C5-A8XJ-01 22 21340151 21340151 C T LZTR1 Silent p.L95L 0.29 TCGA-C5-A8XJ-01 22 21354707 21354707 C G THAP7 Missense_Mutation p.R131P 0.33 tolerated(0.29) benign(0.03) TCGA-C5-A8XJ-01 22 24180575 24180575 G T DERL3 Missense_Mutation p.F97L 0.34 deleterious(0) possibly_damaging(0.767) TCGA-C5-A8XJ-01 22 28394626 28394626 G A TTC28 Missense_Mutation p.S1674L 0.22 deleterious(0) benign(0.217) TCGA-C5-A8XJ-01 22 31521916 31521916 C T INPP5J Intron 0.38 TCGA-C5-A8XJ-01 22 31521930 31521930 C G INPP5J Intron 0.42 TCGA-C5-A8XJ-01 22 37912154 37912154 C T CARD10 Silent p.L175L 0.25 TCGA-C5-A8XJ-01 22 38046134 38046134 G A SH3BP1 Intron 0.22 TCGA-C5-A8XJ-01 22 40807546 40807546 C T MKL1 Missense_Mutation p.D882N 0.29 deleterious(0) benign(0.174) TCGA-C5-A8XJ-01 22 41562627 41562627 G C EP300 Missense_Mutation p.K1277N 0.38 benign(0.118) TCGA-C5-A8XJ-01 22 41568531 41568531 G C EP300 Missense_Mutation p.R1494T 0.42 possibly_damaging(0.841) TCGA-C5-A8XJ-01 22 41568563 41568563 G A EP300 Missense_Mutation p.E1505K 0.47 probably_damaging(0.997) TCGA-C5-A8XJ-01 22 41568656 41568656 G C EP300 Missense_Mutation p.E1536Q 0.40 possibly_damaging(0.573) TCGA-C5-A8XJ-01 22 41973898 41973898 C T PMM1 Missense_Mutation p.E194K 0.49 tolerated(0.9) benign(0.003) TCGA-C5-A8XJ-01 22 42177821 42177821 C G MEI1 Missense_Mutation p.S1020C 0.27 tolerated(0.09) benign(0.021) TCGA-C5-A8XJ-01 22 42269945 42269945 C A SREBF2 Silent p.I337I 0.21 TCGA-C5-A8XJ-01 22 48885488 48885488 C G FAM19A5 Missense_Mutation p.I28M 0.35 deleterious(0.04) benign(0.009) TCGA-C5-A8XJ-01 2 105488751 105488751 C T LINC01159 RNA 0.32 TCGA-C5-A8XJ-01 2 109345596 109345596 G A RANBP2 Missense_Mutation p.M27I 0.31 tolerated(0.13) benign(0.005) TCGA-C5-A8XJ-01 2 109547444 109547444 C T EDAR Silent p.Q9Q 0.33 TCGA-C5-A8XJ-01 2 132291081 132291081 C T CCDC74A 3'UTR 0.08 TCGA-C5-A8XJ-01 2 152235939 152235939 C T TNFAIP6 Silent p.I242I 0.21 TCGA-C5-A8XJ-01 2 152235976 152235976 C G TNFAIP6 Missense_Mutation p.Q255E 0.27 tolerated(1) benign(0) TCGA-C5-A8XJ-01 2 154334800 154334800 C T RPRM Missense_Mutation p.D94N 0.26 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-C5-A8XJ-01 2 167330320 167330320 T C SCN7A Silent p.R144R 0.33 TCGA-C5-A8XJ-01 2 169985190 169985190 C A LRP2 Nonsense_Mutation p.E4651* 0.32 TCGA-C5-A8XJ-01 2 171375960 171375960 C T MYO3B Missense_Mutation p.S1162F 0.36 tolerated_low_confidence(0.69) benign(0.001) TCGA-C5-A8XJ-01 2 178084773 178084773 G A HNRNPA3 3'UTR 0.32 TCGA-C5-A8XJ-01 2 186660326 186660326 G A FSIP2 Silent p.E2910E 0.37 TCGA-C5-A8XJ-01 2 190719745 190719745 C G PMS1 Missense_Mutation p.Q583E 0.24 tolerated(0.05) possibly_damaging(0.491) TCGA-C5-A8XJ-01 2 191550277 191550277 G A NAB1 Missense_Mutation p.E391K 0.50 tolerated_low_confidence(0.08) benign(0.038) TCGA-C5-A8XJ-01 2 201791535 201791535 G T ORC2 Missense_Mutation p.H336N 0.41 deleterious(0.01) benign(0.445) TCGA-C5-A8XJ-01 2 202900966 202900966 C T FZD7 Silent p.I532I 0.30 TCGA-C5-A8XJ-01 2 210650897 210650897 C T UNC80 Silent p.I236I 0.20 TCGA-C5-A8XJ-01 2 211018817 211018817 C T KANSL1L Missense_Mutation p.D164N 0.38 tolerated(0.13) possibly_damaging(0.759) TCGA-C5-A8XJ-01 2 211018829 211018829 C T KANSL1L Missense_Mutation p.D160N 0.46 tolerated(0.08) probably_damaging(0.972) TCGA-C5-A8XJ-01 2 219693239 219693239 C T PRKAG3 Intron 0.27 TCGA-C5-A8XJ-01 2 220100543 220100543 G A ANKZF1 Silent p.E639E 0.45 TCGA-C5-A8XJ-01 2 223169127 223169127 G C CCDC140 3'UTR 0.45 TCGA-C5-A8XJ-01 2 228883955 228883955 G C SPHKAP Missense_Mutation p.Q539E 0.38 tolerated(0.61) benign(0.008) TCGA-C5-A8XJ-01 2 234345024 234345024 C T DGKD Silent p.C252C 0.40 TCGA-C5-A8XJ-01 2 234749468 234749468 G C HJURP Nonsense_Mutation p.S653* 0.34 TCGA-C5-A8XJ-01 2 240944665 240944665 G C NDUFA10 Silent p.L284L 0.44 TCGA-C5-A8XJ-01 2 240985400 240985400 G C OR6B3 Silent p.L30L 0.27 TCGA-C5-A8XJ-01 2 241404566 241404566 G A GPC1 Missense_Mutation p.E403K 0.38 tolerated(0.08) benign(0.348) TCGA-C5-A8XJ-01 2 241831097 241831097 G A C2orf54 Missense_Mutation p.H200Y 0.41 deleterious(0) possibly_damaging(0.473) TCGA-C5-A8XJ-01 2 241831098 241831098 G A C2orf54 Silent p.F199F 0.44 TCGA-C5-A8XJ-01 2 32531439 32531439 C G YIPF4 3'UTR 0.26 TCGA-C5-A8XJ-01 2 32531486 32531486 C G YIPF4 3'UTR 0.28 TCGA-C5-A8XJ-01 2 32820138 32820138 G C BIRC6 Missense_Mutation p.M4513I 0.36 benign(0.001) TCGA-C5-A8XJ-01 2 37599501 37599501 C T QPCT Missense_Mutation p.H276Y 0.32 deleterious(0.04) benign(0.232) TCGA-C5-A8XJ-01 2 69581645 69581645 G C GFPT1 Missense_Mutation p.H221D 0.38 tolerated(0.17) benign(0.008) TCGA-C5-A8XJ-01 2 74884736 74884736 G A SEMA4F Silent p.K114K 0.27 TCGA-C5-A8XJ-01 2 95947041 95947041 C T PROM2 Silent p.F493F 0.30 TCGA-C5-A8XJ-01 2 98422109 98422109 T C TMEM131 Missense_Mutation p.I705V 0.32 tolerated(0.78) benign(0.159) TCGA-C5-A8XJ-01 3 10140711 10140711 G A FANCD2 3'UTR 0.50 TCGA-C5-A8XJ-01 3 108773629 108773629 G A MORC1 Silent p.L426L 0.26 TCGA-C5-A8XJ-01 3 112252847 112252847 G A ATG3 Intron 0.35 TCGA-C5-A8XJ-01 3 124149527 124149527 G C KALRN Missense_Mutation p.E910Q 0.33 deleterious(0) probably_damaging(0.983) TCGA-C5-A8XJ-01 3 131442386 131442386 C T CPNE4 Silent p.V88V 0.09 TCGA-C5-A8XJ-01 3 133654660 133654660 C T SLCO2A1 Missense_Mutation p.R591Q 0.12 tolerated(0.19) benign(0.183) TCGA-C5-A8XJ-01 3 141923311 141923311 G A GK5 Intron 0.47 TCGA-C5-A8XJ-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.26 deleterious(0.02) probably_damaging(0.959) TCGA-C5-A8XJ-01 3 178947162 178947162 G C PIK3CA Missense_Mutation p.L866F 0.19 tolerated(0.11) benign(0.424) TCGA-C5-A8XJ-01 3 183853060 183853060 C T EIF2B5 5'UTR 0.40 TCGA-C5-A8XJ-01 3 183966983 183966983 G A ALG3 5'Flank 0.21 TCGA-C5-A8XJ-01 3 184019379 184019379 G A PSMD2 Missense_Mutation p.E138K 0.36 deleterious(0.02) possibly_damaging(0.65) TCGA-C5-A8XJ-01 3 187451449 187451449 G A BCL6 Silent p.F11F 0.32 TCGA-C5-A8XJ-01 3 194338475 194338475 G A TMEM44 Nonsense_Mutation p.Q215* 0.50 TCGA-C5-A8XJ-01 3 197553785 197553785 C G LRCH3 Nonsense_Mutation p.S226* 0.37 TCGA-C5-A8XJ-01 3 49200468 49200468 T C CCDC71 Missense_Mutation p.R392G 0.11 deleterious(0.03) unknown(0) TCGA-C5-A8XJ-01 3 57620488 57620488 G C DENND6A Missense_Mutation p.P381A 0.67 tolerated(0.14) benign(0.002) TCGA-C5-A8XJ-01 3 69096601 69096601 C T TMF1 Missense_Mutation p.E419K 0.53 deleterious_low_confidence(0.03) benign(0.021) TCGA-C5-A8XJ-01 3 97329696 97329696 C T EPHA6 Missense_Mutation p.R858W 0.25 deleterious(0) probably_damaging(1) TCGA-C5-A8XJ-01 4 103718609 103718609 C T UBE2D3 Missense_Mutation p.R138K 0.43 tolerated_low_confidence(0.55) benign(0.003) TCGA-C5-A8XJ-01 4 106640521 106640521 C G GSTCD Nonsense_Mutation p.S244* 0.17 TCGA-C5-A8XJ-01 4 108853211 108853211 G A CYP2U1 Missense_Mutation p.E138K 0.32 deleterious(0) possibly_damaging(0.473) TCGA-C5-A8XJ-01 4 113191027 113191027 A G AP1AR 3'UTR 0.34 TCGA-C5-A8XJ-01 4 126238195 126238195 G A FAT4 Missense_Mutation p.R210H 0.42 probably_damaging(1) TCGA-C5-A8XJ-01 4 126370925 126370925 C T FAT4 Silent p.F2918F 0.50 TCGA-C5-A8XJ-01 4 129864279 129864279 C T SCLT1 Missense_Mutation p.E502K 0.38 deleterious(0.03) probably_damaging(0.969) TCGA-C5-A8XJ-01 4 129864336 129864336 C T SCLT1 Missense_Mutation p.E483K 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-C5-A8XJ-01 4 13602178 13602178 C G BOD1L1 Missense_Mutation p.E2116Q 0.50 probably_damaging(0.998) TCGA-C5-A8XJ-01 4 141317048 141317048 C T CLGN Nonsense_Mutation p.W358* 0.26 TCGA-C5-A8XJ-01 4 151242370 151242370 C G LRBA Missense_Mutation p.A2546P 0.22 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XJ-01 4 152086822 152086822 C T SH3D19 Missense_Mutation p.E241K 0.30 deleterious(0.04) probably_damaging(0.98) TCGA-C5-A8XJ-01 4 17846842 17846842 C A NCAPG 3'Flank 0.29 TCGA-C5-A8XJ-01 4 3149859 3149859 C G HTT Silent p.L1141L 0.35 TCGA-C5-A8XJ-01 4 52889625 52889625 C G SGCB 3'UTR 0.22 TCGA-C5-A8XJ-01 4 674924 674924 G A MYL5 Missense_Mutation p.E139K 0.35 deleterious(0) benign(0.027) TCGA-C5-A8XJ-01 4 71768217 71768217 C T MOB1B 5'UTR 0.18 TCGA-C5-A8XJ-01 4 843557 843557 C T GAK Silent p.A1280A 0.32 TCGA-C5-A8XJ-01 5 108745640 108745640 G T PJA2 5'UTR 0.27 TCGA-C5-A8XJ-01 5 118968530 118968530 C T FAM170A Missense_Mutation p.S53F 0.34 deleterious(0.01) probably_damaging(1) TCGA-C5-A8XJ-01 5 135693021 135693021 C T TRPC7 Missense_Mutation p.E19K 0.42 deleterious_low_confidence(0.01) benign(0.094) TCGA-C5-A8XJ-01 5 149749143 149749143 C G TCOF1 Missense_Mutation p.S206C 0.33 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XJ-01 5 154203141 154203141 C T FAXDC2 Silent p.V126V 0.41 TCGA-C5-A8XJ-01 5 176636793 176636793 G C NSD1 Missense_Mutation p.E465Q 0.31 tolerated_low_confidence(0.07) benign(0.179) TCGA-C5-A8XJ-01 5 178139107 178139107 G A ZNF354A Missense_Mutation p.S591L 0.22 deleterious(0) possibly_damaging(0.459) TCGA-C5-A8XJ-01 5 179042570 179042570 C T HNRNPH1 Missense_Mutation p.D443N 0.40 tolerated_low_confidence(0.59) benign(0.001) TCGA-C5-A8XJ-01 5 32787146 32787146 C T NPR3 3'UTR 0.53 TCGA-C5-A8XJ-01 5 42806882 42806882 G A SEPP1 Intron 0.43 TCGA-C5-A8XJ-01 5 447767 447767 G C EXOC3 Missense_Mutation p.Q88H 0.57 deleterious(0.03) probably_damaging(0.948) TCGA-C5-A8XJ-01 5 52344225 52344225 G T ITGA2 Silent p.G140G 0.24 TCGA-C5-A8XJ-01 5 66461257 66461257 G A MAST4 Missense_Mutation p.E2084K 0.30 benign(0.016) TCGA-C5-A8XJ-01 5 6755362 6755362 G A PAPD7 3'UTR 0.64 TCGA-C5-A8XJ-01 5 74017293 74017293 C G GFM2 3'UTR 0.64 TCGA-C5-A8XJ-01 5 78326665 78326665 G A DMGDH Silent p.V558V 0.22 TCGA-C5-A8XJ-01 5 95116044 95116044 G C RHOBTB3 Missense_Mutation p.K457N 0.42 tolerated(0.6) benign(0.016) TCGA-C5-A8XJ-01 6 12125679 12125679 C G HIVEP1 Missense_Mutation p.S1884C 0.21 deleterious(0.01) probably_damaging(0.927) TCGA-C5-A8XJ-01 6 131203785 131203785 G A EPB41L2 Intron 0.36 TCGA-C5-A8XJ-01 6 135360748 135360748 C G HBS1L Missense_Mutation p.K131N 0.23 tolerated(0.1) benign(0.261) TCGA-C5-A8XJ-01 6 138199676 138199676 G A TNFAIP3 Missense_Mutation p.R365K 0.37 tolerated(0.94) benign(0.005) TCGA-C5-A8XJ-01 6 139203887 139203887 G A ECT2L Missense_Mutation p.R636K 0.46 deleterious(0.03) probably_damaging(0.927) TCGA-C5-A8XJ-01 6 152265441 152265441 C G ESR1 Missense_Mutation p.I298M 0.23 tolerated(0.14) benign(0.416) TCGA-C5-A8XJ-01 6 160464244 160464244 C T IGF2R Silent p.F515F 0.35 TCGA-C5-A8XJ-01 6 168711075 168711075 G A DACT2 Missense_Mutation p.A144V 0.10 deleterious(0.01) possibly_damaging(0.555) TCGA-C5-A8XJ-01 6 17556897 17556897 G T CAP2 3'UTR 0.56 TCGA-C5-A8XJ-01 6 31864860 31864860 C G EHMT2 Intron 0.28 TCGA-C5-A8XJ-01 6 32825832 32825832 G A PSMB9 Missense_Mutation p.R104K 0.16 tolerated(0.85) benign(0.005) TCGA-C5-A8XJ-01 6 33169643 33169643 G A SLC39A7 Missense_Mutation p.G178D 0.23 deleterious(0) probably_damaging(1) TCGA-C5-A8XJ-01 6 41090896 41090896 C T ADCY10P1 RNA 0.53 TCGA-C5-A8XJ-01 6 43160859 43160859 C T CUL9 Silent p.L767L 0.29 TCGA-C5-A8XJ-01 6 43188488 43188488 G T CUL9 Nonsense_Mutation p.E2143* 0.41 TCGA-C5-A8XJ-01 6 76751751 76751751 T G IMPG1 Missense_Mutation p.M54L 0.31 tolerated(0.15) benign(0.001) TCGA-C5-A8XJ-01 6 97562086 97562086 G A KLHL32 Missense_Mutation p.G352E 0.43 deleterious(0) probably_damaging(1) TCGA-C5-A8XJ-01 7 105888959 105888959 C T NAMPT 3'UTR 0.33 TCGA-C5-A8XJ-01 7 1195214 1195214 G A ZFAND2A Missense_Mutation p.H53Y 0.39 deleterious(0.02) benign(0.034) TCGA-C5-A8XJ-01 7 130036506 130036506 C T CEP41 3'UTR 0.36 TCGA-C5-A8XJ-01 7 137028382 137028382 C G PTN 5'UTR 0.46 TCGA-C5-A8XJ-01 7 138213894 138213894 G A TRIM24 Silent p.V305V 0.33 TCGA-C5-A8XJ-01 7 140223131 140223131 C T DENND2A Missense_Mutation p.E881K 0.36 tolerated(0.31) benign(0.102) TCGA-C5-A8XJ-01 7 142045347 142045347 C G TRBV4-2 5'UTR 0.28 TCGA-C5-A8XJ-01 7 151855996 151855996 C T KMT2C Silent p.E3874E 0.24 TCGA-C5-A8XJ-01 7 151874386 151874386 C G KMT2C Missense_Mutation p.E2718Q 0.44 probably_damaging(0.999) TCGA-C5-A8XJ-01 7 15725988 15725988 C T MEOX2 Missense_Mutation p.A14T 0.31 deleterious(0.04) benign(0.084) TCGA-C5-A8XJ-01 7 20371538 20371538 C T ITGB8 Missense_Mutation p.L37F 0.36 tolerated(0.08) benign(0.007) TCGA-C5-A8XJ-01 7 22160208 22160208 C T RAPGEF5 3'UTR 0.33 TCGA-C5-A8XJ-01 7 22233269 22233269 G C RAPGEF5 Intron 0.36 TCGA-C5-A8XJ-01 7 2617911 2617911 G A IQCE Missense_Mutation p.M167I 0.32 deleterious(0) possibly_damaging(0.643) TCGA-C5-A8XJ-01 7 27210630 27210630 G C HOXA10 3'UTR 0.28 TCGA-C5-A8XJ-01 7 33014253 33014253 T C FKBP9 Silent p.N82N 0.10 TCGA-C5-A8XJ-01 7 43602647 43602647 C T HECW1 3'UTR 0.19 TCGA-C5-A8XJ-01 7 50468100 50468100 G A IKZF1 Silent p.S403S 0.31 TCGA-C5-A8XJ-01 7 5886682 5886682 C G ZNF815P RNA 0.25 TCGA-C5-A8XJ-01 7 6063359 6063359 G A EIF2AK1 3'UTR 0.31 TCGA-C5-A8XJ-01 7 6769830 6769830 C T PMS2CL RNA 0.36 TCGA-C5-A8XJ-01 7 71177131 71177131 G A WBSCR17 Silent p.%3D 0.54 TCGA-C5-A8XJ-01 7 74193450 74193450 C T NCF1 Missense_Mutation p.P59L 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-C5-A8XJ-01 7 77378866 77378866 C G RSBN1L Missense_Mutation p.Q277E 0.39 deleterious(0) probably_damaging(0.994) TCGA-C5-A8XJ-01 7 81372222 81372222 C A HGF Intron 0.40 TCGA-C5-A8XJ-01 7 86825439 86825439 G A DMTF1 3'UTR 0.31 TCGA-C5-A8XJ-01 7 89789171 89789171 A G STEAP1 Silent p.E23E 0.39 TCGA-C5-A8XJ-01 7 99160076 99160076 G A ZNF655 Intron 0.33 TCGA-C5-A8XJ-01 7 99801641 99801641 C T STAG3 Intron 0.36 TCGA-C5-A8XJ-01 8 102656396 102656396 G A GRHL2 Missense_Mutation p.E519K 0.45 tolerated(0.16) benign(0.097) TCGA-C5-A8XJ-01 8 123985859 123985859 G A ZHX2 3'UTR 0.35 TCGA-C5-A8XJ-01 8 126085470 126085470 T A KIAA0196 Missense_Mutation p.I359F 0.44 tolerated(0.13) probably_damaging(0.928) TCGA-C5-A8XJ-01 8 128429093 128429093 C A POU5F1B Missense_Mutation p.H328N 0.28 tolerated(0.17) benign(0.253) TCGA-C5-A8XJ-01 8 128959880 128959880 C G TMEM75 Missense_Mutation p.R134T 0.37 deleterious_low_confidence(0) benign(0.412) TCGA-C5-A8XJ-01 8 131795991 131795991 C T ADCY8 Missense_Mutation p.E1072K 0.33 tolerated(0.06) possibly_damaging(0.904) TCGA-C5-A8XJ-01 8 133044138 133044138 C T OC90 Missense_Mutation p.D341N 0.27 tolerated(0.05) benign(0.001) TCGA-C5-A8XJ-01 8 145018829 145018829 C T PLEC Intron 0.35 TCGA-C5-A8XJ-01 8 195571 195571 G A ZNF596 Missense_Mutation p.E242K 0.31 tolerated(0.22) probably_damaging(0.926) TCGA-C5-A8XJ-01 8 22876420 22876420 G C RHOBTB2 3'Flank 0.33 TCGA-C5-A8XJ-01 8 35579821 35579821 G A UNC5D Missense_Mutation p.R404K 0.44 tolerated(0.19) benign(0.059) TCGA-C5-A8XJ-01 8 38277107 38277107 T C FGFR1 Missense_Mutation p.S441G 0.08 tolerated(0.45) benign(0.185) TCGA-C5-A8XJ-01 8 53568605 53568605 C G RB1CC1 Missense_Mutation p.E1262Q 0.34 tolerated(0.08) benign(0.062) TCGA-C5-A8XJ-01 8 53580601 53580601 C T RB1CC1 Missense_Mutation p.E385K 0.31 deleterious(0) benign(0.285) TCGA-C5-A8XJ-01 8 57294546 57294546 G T SDR16C6P RNA 0.26 TCGA-C5-A8XJ-01 8 67040682 67040682 C T TRIM55 Silent p.I104I 0.33 TCGA-C5-A8XJ-01 8 72958780 72958780 C G TRPA1 Missense_Mutation p.D677H 0.34 deleterious(0.03) possibly_damaging(0.546) TCGA-C5-A8XJ-01 8 73993272 73993272 C T SBSPON Missense_Mutation p.D131N 0.23 tolerated(0.18) benign(0.007) TCGA-C5-A8XJ-01 8 82371476 82371476 G A FABP9 Missense_Mutation p.S57F 0.36 deleterious(0) possibly_damaging(0.665) TCGA-C5-A8XJ-01 8 89052396 89052396 C T MMP16 3'UTR 0.36 TCGA-C5-A8XJ-01 8 89053827 89053827 C T MMP16 Silent p.V562V 0.36 TCGA-C5-A8XJ-01 8 94767190 94767190 C T TMEM67 Silent p.L16L 0.46 TCGA-C5-A8XJ-01 8 97154882 97154882 G A GDF6 3'UTR 0.38 TCGA-C5-A8XJ-01 9 114304047 114304047 C T ZNF483 Nonsense_Mutation p.Q278* 0.42 TCGA-C5-A8XJ-01 9 125637566 125637566 G A RC3H2 Intron 0.49 TCGA-C5-A8XJ-01 9 125693726 125693726 G A ZBTB26 5'UTR 0.35 TCGA-C5-A8XJ-01 9 130473523 130473523 C T C9orf117 Silent p.I201I 0.17 TCGA-C5-A8XJ-01 9 130473526 130473526 C T C9orf117 Silent p.I202I 0.19 TCGA-C5-A8XJ-01 9 13140081 13140081 G A MPDZ Missense_Mutation p.S1303L 0.33 tolerated(0.1) benign(0.182) TCGA-C5-A8XJ-01 9 131458507 131458507 G C SET 3'UTR 0.28 TCGA-C5-A8XJ-01 9 13408408 13408408 G A RP11-536O18.2 RNA 0.24 TCGA-C5-A8XJ-01 9 138648721 138648721 C G KCNT1 Silent p.V181V 0.30 TCGA-C5-A8XJ-01 9 139410452 139410452 G T NOTCH1 Nonsense_Mutation p.Y550* 0.30 TCGA-C5-A8XJ-01 9 139686168 139686168 C T TMEM141 Silent p.L20L 0.37 TCGA-C5-A8XJ-01 9 35399703 35399703 G C UNC13B Missense_Mutation p.D1356H 0.27 deleterious(0) probably_damaging(0.936) TCGA-C5-A8XJ-01 9 43627520 43627520 C T SPATA31A6 Silent p.S389S 0.12 TCGA-C5-A8XJ-01 9 66554635 66554635 C T RP11-262H14.4 RNA 0.14 TCGA-C5-A8XJ-01 9 73736448 73736448 G A TRPM3 5'UTR 0.40 TCGA-C5-A8XJ-01 9 8486188 8486188 C G PTPRD Missense_Mutation p.E877Q 0.44 tolerated(0.1) benign(0.378) TCGA-C5-A8XJ-01 9 96398787 96398787 G A PHF2 Silent p.L93L 0.34 TCGA-C5-A8XJ-01 X 101138483 101138483 C T ZMAT1 Silent p.%3D 0.21 TCGA-C5-A8XJ-01 X 102585857 102585857 G C TCEAL7 5'UTR 0.18 TCGA-C5-A8XJ-01 X 106845330 106845330 C T FRMPD3 Missense_Mutation p.S1387F 0.14 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XJ-01 X 107865911 107865911 G A COL4A5 Missense_Mutation p.D925N 0.10 unknown(0) TCGA-C5-A8XJ-01 X 110644326 110644326 C A DCX Silent p.L280L 0.12 TCGA-C5-A8XJ-01 X 118109238 118109238 A G LONRF3 Silent p.L165L 0.17 TCGA-C5-A8XJ-01 X 118604963 118604963 G A SLC25A5 Missense_Mutation p.R280K 0.22 deleterious(0.01) benign(0.287) TCGA-C5-A8XJ-01 X 120183696 120183696 G A GLUD2 3'UTR 0.16 TCGA-C5-A8XJ-01 X 125685483 125685483 C T DCAF12L1 Missense_Mutation p.G370D 0.13 deleterious(0) probably_damaging(0.95) TCGA-C5-A8XJ-01 X 127185751 127185751 G C ACTRT1 Silent p.L145L 0.16 TCGA-C5-A8XJ-01 X 127186288 127186288 C T ACTRT1 5'UTR 0.20 TCGA-C5-A8XJ-01 X 131219662 131219662 C T FRMD7 Missense_Mutation p.E198K 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-C5-A8XJ-01 X 131348445 131348445 G A RAP2C Silent p.V101V 0.18 TCGA-C5-A8XJ-01 X 133561496 133561496 C T PHF6 3'UTR 0.13 TCGA-C5-A8XJ-01 X 134494640 134494640 G A ZNF449 Missense_Mutation p.R399K 0.16 tolerated(0.26) benign(0.016) TCGA-C5-A8XJ-01 X 136653546 136653546 C G ZIC3 3'UTR 0.25 TCGA-C5-A8XJ-01 X 140714369 140714369 G C RP1-171K16.5 Intron 0.21 TCGA-C5-A8XJ-01 X 144905563 144905563 G A SLITRK2 Silent p.L540L 0.14 TCGA-C5-A8XJ-01 X 144909765 144909765 G C TMEM257 3'UTR 0.22 TCGA-C5-A8XJ-01 X 148076792 148076792 C T AFF2 3'UTR 0.10 TCGA-C5-A8XJ-01 X 149828859 149828859 G A MTM1 Missense_Mutation p.E457K 0.23 deleterious(0.02) probably_damaging(0.983) TCGA-C5-A8XJ-01 X 152938141 152938141 G A PNCK Missense_Mutation p.S110F 0.23 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XJ-01 X 153578033 153578033 G C FLNA Missense_Mutation p.F2512L 0.17 deleterious(0.01) benign(0.062) TCGA-C5-A8XJ-01 X 153671450 153671450 G C GDI1 3'UTR 0.14 TCGA-C5-A8XJ-01 X 153677090 153677092 AGG - FAM50A In_Frame_Del p.E192del 0.15 TCGA-C5-A8XJ-01 X 153760877 153760877 C A G6PD Nonsense_Mutation p.E428* 0.26 TCGA-C5-A8XJ-01 X 155004290 155004290 G A SPRY3 Missense_Mutation p.D253N 0.23 deleterious(0) probably_damaging(0.994) TCGA-C5-A8XJ-01 X 16711524 16711524 G A CTPS2 Silent p.F175F 0.17 TCGA-C5-A8XJ-01 X 16857952 16857952 G C TXLNG Missense_Mutation p.K387N 0.15 deleterious(0) probably_damaging(1) TCGA-C5-A8XJ-01 X 31138357 31138357 C T DMD 3'UTR 0.09 TCGA-C5-A8XJ-01 X 3240437 3240437 C T MXRA5 Missense_Mutation p.D1097N 0.20 tolerated(0.1) benign(0.001) TCGA-C5-A8XJ-01 X 32536166 32536166 G A DMD Missense_Mutation p.R751W 0.17 probably_damaging(0.963) TCGA-C5-A8XJ-01 X 33229516 33229516 G A DMD 5'UTR 0.18 TCGA-C5-A8XJ-01 X 37027923 37027923 G C FAM47C Missense_Mutation p.E480D 0.19 tolerated(0.14) benign(0.053) TCGA-C5-A8XJ-01 X 41193508 41193508 G C DDX3X Translation_Start_Site p.M1? 0.18 deleterious(0.02) benign(0.38) TCGA-C5-A8XJ-01 X 43817961 43817961 C T NDP 5'UTR 0.19 TCGA-C5-A8XJ-01 X 47004552 47004552 G C RBM10 5'UTR 0.10 TCGA-C5-A8XJ-01 X 49083471 49083471 C G CACNA1F Missense_Mutation p.E413Q 0.18 tolerated(0.11) possibly_damaging(0.678) TCGA-C5-A8XJ-01 X 54321153 54321153 G C WNK3 Missense_Mutation p.S509C 0.08 deleterious(0.02) possibly_damaging(0.682) TCGA-C5-A8XJ-01 X 63409394 63409394 G A AMER1 3'UTR 0.26 TCGA-C5-A8XJ-01 X 67331781 67331781 G A OPHN1 Missense_Mutation p.R481C 0.13 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XJ-01 X 67939128 67939128 G A STARD8 Missense_Mutation p.E593K 0.17 deleterious(0.03) possibly_damaging(0.458) TCGA-C5-A8XJ-01 X 68750165 68750165 G A FAM155B 3'UTR 0.12 TCGA-C5-A8XJ-01 X 70026631 70026631 G C TEX11 Missense_Mutation p.L221V 0.20 deleterious(0) probably_damaging(0.974) TCGA-C5-A8XJ-01 X 70348505 70348505 C T MED12 Missense_Mutation p.R1138W 0.20 probably_damaging(1) TCGA-C5-A8XJ-01 X 70514251 70514251 G C NONO Missense_Mutation p.E175Q 0.20 deleterious(0) possibly_damaging(0.884) TCGA-C5-A8XJ-01 X 70837517 70837517 C T CXCR3 5'UTR 0.18 TCGA-C5-A8XJ-01 X 71425546 71425546 C T ERCC6L Missense_Mutation p.R1024K 0.17 tolerated(0.2) benign(0.029) TCGA-C5-A8XJ-01 X 75648244 75648244 C T MAGEE1 5'UTR 0.14 TCGA-C5-A8XJ-01 X 77381506 77381506 G A PGK1 3'UTR 0.10 TCGA-C5-A8XJ-01 X 77528728 77528728 C T CYSLTR1 Silent p.K172K 0.13 TCGA-C5-A8XJ-01 X 79700350 79700350 C A FAM46D 3'UTR 0.18 TCGA-C5-A8XJ-01 X 83320098 83320098 G A RPS6KA6 Missense_Mutation p.H665Y 0.27 tolerated(0.11) benign(0.235) TCGA-C5-A8XJ-01 X 84527565 84527565 A T ZNF711 3'UTR 0.74 TCGA-C5-A8XJ-01 X 90690589 90690589 G A PABPC5 Missense_Mutation p.E5K 0.21 tolerated_low_confidence(0.76) benign(0.292) TCGA-C5-A8XK-01 10 103603285 103603285 C T KCNIP2 Missense_Mutation p.R14Q 0.31 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-C5-A8XK-01 10 104678483 104678483 G A CNNM2 Silent p.T82T 0.38 TCGA-C5-A8XK-01 10 12871402 12871402 C T CAMK1D 3'UTR 0.28 TCGA-C5-A8XK-01 10 134945059 134945059 C T GPR123 3'UTR 0.10 TCGA-C5-A8XK-01 10 135098971 135098971 G A TUBGCP2 Silent p.L656L 0.47 TCGA-C5-A8XK-01 10 13735825 13735825 C G FRMD4A Intron 0.32 TCGA-C5-A8XK-01 10 46918241 46918241 G C RP11-38L15.8 5'Flank 0.38 TCGA-C5-A8XK-01 10 4703920 4703920 G C LINC00705 RNA 0.47 TCGA-C5-A8XK-01 10 50819073 50819073 A G SLC18A3 Missense_Mutation p.N96S 0.30 tolerated(0.22) benign(0.304) TCGA-C5-A8XK-01 10 50957835 50957835 C T OGDHL Silent p.V308V 0.30 TCGA-C5-A8XK-01 10 70405133 70405133 G T TET1 Missense_Mutation p.D883Y 0.38 deleterious(0) possibly_damaging(0.907) TCGA-C5-A8XK-01 10 71392734 71392734 C T C10orf35 Silent p.L95L 0.38 TCGA-C5-A8XK-01 10 74886498 74886498 G A NUDT13 Silent p.L257L 0.25 TCGA-C5-A8XK-01 10 75557306 75557306 G A ZSWIM8 Missense_Mutation p.G1202E 0.49 tolerated(0.2) probably_damaging(0.992) TCGA-C5-A8XK-01 10 89725681 89725681 G T PTEN 3'UTR 0.54 TCGA-C5-A8XK-01 10 90366666 90366666 G A LIPJ 3'UTR 0.39 TCGA-C5-A8XK-01 10 90773980 90773980 G A FAS Missense_Mutation p.E261K 0.31 deleterious(0.01) probably_damaging(0.961) TCGA-C5-A8XK-01 10 96702153 96702153 G A CYP2C9 Intron 0.40 TCGA-C5-A8XK-01 10 98667486 98667486 G C LCOR 5'UTR 0.25 TCGA-C5-A8XK-01 11 100863522 100863522 G A TMEM133 3'UTR 0.12 TCGA-C5-A8XK-01 11 102937238 102937238 C T DCUN1D5 Missense_Mutation p.D134N 0.06 tolerated(0.05) possibly_damaging(0.589) TCGA-C5-A8XK-01 11 118472903 118472903 C T ARCN1 3'UTR 0.44 TCGA-C5-A8XK-01 11 12380465 12380465 G T MICALCL 3'UTR 0.63 TCGA-C5-A8XK-01 11 47433505 47433505 C G SLC39A13 Silent p.L110L 0.64 TCGA-C5-A8XK-01 11 58949243 58949243 C T DTX4 Silent p.Y81Y 0.35 TCGA-C5-A8XK-01 11 60201253 60201253 A G MS4A5 Missense_Mutation p.I119V 0.16 tolerated(0.82) benign(0.01) TCGA-C5-A8XK-01 11 60231299 60231299 C T MS4A1 Intron 0.44 TCGA-C5-A8XK-01 11 61731580 61731580 G A BEST1 3'UTR 0.44 TCGA-C5-A8XK-01 11 61908216 61908216 G A INCENP Missense_Mutation p.E462K 0.35 deleterious(0.01) unknown(0) TCGA-C5-A8XK-01 11 6416554 6416554 G A APBB1 3'UTR 0.19 TCGA-C5-A8XK-01 11 6643993 6643993 G A DCHS1 Missense_Mutation p.P2972S 0.59 tolerated(0.23) benign(0.013) TCGA-C5-A8XK-01 11 72470359 72470359 C T STARD10 Missense_Mutation p.R92H 0.18 deleterious(0) probably_damaging(0.988) TCGA-C5-A8XK-01 11 77830290 77830290 G C ALG8 Missense_Mutation p.H162D 0.23 deleterious(0.02) possibly_damaging(0.539) TCGA-C5-A8XK-01 11 95712438 95712438 G C MAML2 Missense_Mutation p.L1049V 0.56 unknown(0) TCGA-C5-A8XK-01 12 109186511 109186511 C G SSH1 Missense_Mutation p.E482Q 0.33 tolerated(0.05) possibly_damaging(0.709) TCGA-C5-A8XK-01 12 111158427 111158427 C G PPP1CC Intron 0.35 TCGA-C5-A8XK-01 12 112641492 112641492 C T HECTD4 Missense_Mutation p.R2639Q 0.46 probably_damaging(0.994) TCGA-C5-A8XK-01 12 1137543 1137543 G - ERC1 Frame_Shift_Del p.K159Rfs*4 0.13 TCGA-C5-A8XK-01 12 114356243 114356243 C T RBM19 Missense_Mutation p.V799M 0.38 tolerated(0.06) benign(0.327) TCGA-C5-A8XK-01 12 118480728 118480728 C G WSB2 Silent p.L159L 0.35 TCGA-C5-A8XK-01 12 123089526 123089526 G A KNTC1 Missense_Mutation p.E1760K 0.23 tolerated(0.13) benign(0.016) TCGA-C5-A8XK-01 12 123678982 123678982 G C MPHOSPH9 Nonsense_Mutation p.S579* 0.32 TCGA-C5-A8XK-01 12 124144767 124144767 G A GTF2H3 Silent p.L304L 0.40 TCGA-C5-A8XK-01 12 124333331 124333331 G C DNAH10 Missense_Mutation p.D1884H 0.28 probably_damaging(1) TCGA-C5-A8XK-01 12 133360752 133360752 C T GOLGA3 Missense_Mutation p.E1089K 0.44 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XK-01 12 14656864 14656864 G A PLBD1 Nonsense_Mutation p.Q502* 0.24 TCGA-C5-A8XK-01 12 48369112 48369112 C G COL2A1 Missense_Mutation p.E1292Q 0.22 unknown(0) TCGA-C5-A8XK-01 12 49434627 49434627 G T KMT2D Nonsense_Mutation p.S2309* 0.40 TCGA-C5-A8XK-01 12 49521589 49521589 G C TUBA1B 3'UTR 0.53 TCGA-C5-A8XK-01 12 6101075 6101075 G C VWF Missense_Mutation p.F2236L 0.30 deleterious(0) possibly_damaging(0.787) TCGA-C5-A8XK-01 12 68051647 68051647 C T DYRK2 Silent p.F320F 0.41 TCGA-C5-A8XK-01 12 6883786 6883786 C T LAG3 Silent p.L179L 0.35 TCGA-C5-A8XK-01 12 72680615 72680615 G C TRHDE Missense_Mutation p.E312Q 0.34 tolerated(0.26) possibly_damaging(0.785) TCGA-C5-A8XK-01 12 7559190 7559190 C T CD163L1 Missense_Mutation p.R342K 0.14 tolerated(0.18) benign(0.014) TCGA-C5-A8XK-01 12 81101661 81101661 G A MYF6 Missense_Mutation p.D55N 0.28 tolerated(0.09) possibly_damaging(0.59) TCGA-C5-A8XK-01 12 8185992 8185992 G C FOXJ2 5'UTR 0.31 TCGA-C5-A8XK-01 12 89853418 89853418 G A POC1B Silent p.T370T 0.14 TCGA-C5-A8XK-01 12 9087740 9087740 G A PHC1 Silent p.L758L 0.33 TCGA-C5-A8XK-01 13 23909205 23909205 G A SACS Missense_Mutation p.S2937F 0.67 benign(0.326) TCGA-C5-A8XK-01 13 33249978 33249978 T C PDS5B Intron 0.55 TCGA-C5-A8XK-01 13 51929200 51929200 C G SERPINE3 Missense_Mutation p.F307L 0.53 tolerated(0.1) possibly_damaging(0.479) TCGA-C5-A8XK-01 14 105268046 105268046 G C ZBTB42 Missense_Mutation p.R171P 0.26 tolerated(0.35) benign(0.001) TCGA-C5-A8XK-01 14 106733263 106733263 T C IGHV1-24 Missense_Mutation p.I78V 0.26 tolerated(0.39) benign(0.001) TCGA-C5-A8XK-01 14 20711739 20711739 G A OR11H4 Silent p.G263G 0.30 TCGA-C5-A8XK-01 14 23652048 23652048 C T SLC7A8 Missense_Mutation p.E26K 0.43 tolerated(0.57) benign(0.001) TCGA-C5-A8XK-01 14 23652130 23652130 C G SLC7A8 5'UTR 0.38 TCGA-C5-A8XK-01 14 24658562 24658562 G A TM9SF1 3'UTR 0.27 TCGA-C5-A8XK-01 14 25045459 25045459 T G CTSG 5'UTR 0.27 TCGA-C5-A8XK-01 14 31618333 31618333 C T HECTD1 Missense_Mutation p.R730K 0.47 tolerated(0.22) benign(0.007) TCGA-C5-A8XK-01 14 31618346 31618346 C T HECTD1 Missense_Mutation p.E726K 0.43 deleterious(0.01) possibly_damaging(0.828) TCGA-C5-A8XK-01 14 77787723 77787723 G A GSTZ1 Intron 0.25 TCGA-C5-A8XK-01 14 80666425 80666425 C T DIO2 3'Flank 0.35 TCGA-C5-A8XK-01 15 63904563 63904563 C G HERC1 Missense_Mutation p.E4763Q 0.34 possibly_damaging(0.683) TCGA-C5-A8XK-01 15 77777893 77777893 G C HMG20A 3'UTR 0.44 TCGA-C5-A8XK-01 15 90437355 90437355 G T AP3S2 5'UTR 0.59 TCGA-C5-A8XK-01 16 22163931 22163931 G A VWA3A Silent p.L1127L 0.45 TCGA-C5-A8XK-01 16 2335581 2335581 G C ABCA3 Missense_Mutation p.F1115L 0.22 deleterious(0) probably_damaging(0.997) TCGA-C5-A8XK-01 16 28843580 28843580 C T ATXN2L Missense_Mutation p.S459L 0.34 tolerated(0.09) benign(0.23) TCGA-C5-A8XK-01 16 30793625 30793625 G A ZNF629 Missense_Mutation p.S675F 0.42 deleterious(0.03) possibly_damaging(0.657) TCGA-C5-A8XK-01 16 4382451 4382451 C T GLIS2 Missense_Mutation p.S57L 0.35 deleterious(0.01) benign(0.042) TCGA-C5-A8XK-01 16 66420985 66420985 G C CDH5 Missense_Mutation p.E162Q 0.47 deleterious(0.03) benign(0.429) TCGA-C5-A8XK-01 16 72164153 72164153 C A PMFBP1 Missense_Mutation p.D581Y 0.62 deleterious(0) possibly_damaging(0.878) TCGA-C5-A8XK-01 16 74657953 74657953 C T RFWD3 Missense_Mutation p.S733N 0.38 tolerated(0.07) benign(0.167) TCGA-C5-A8XK-01 16 77465343 77465343 G A ADAMTS18 Missense_Mutation p.S115L 0.40 deleterious(0) possibly_damaging(0.631) TCGA-C5-A8XK-01 16 88800002 88800002 C T PIEZO1 Silent p.L827L 0.27 TCGA-C5-A8XK-01 16 88872462 88872462 C T CDT1 Missense_Mutation p.S289L 0.23 deleterious(0.02) possibly_damaging(0.857) TCGA-C5-A8XK-01 16 89254568 89254568 G A CDH15 Missense_Mutation p.D285N 0.23 deleterious(0) probably_damaging(0.99) TCGA-C5-A8XK-01 17 12656119 12656119 C T MYOCD Missense_Mutation p.S505F 0.31 tolerated(0.18) possibly_damaging(0.672) TCGA-C5-A8XK-01 17 21318690 21318690 C T KCNJ12 Silent p.I12I 0.08 TCGA-C5-A8XK-01 17 2587271 2587271 G C PAFAH1B1 3'UTR 0.28 TCGA-C5-A8XK-01 17 28548705 28548705 G A SLC6A4 Missense_Mutation p.S91L 0.55 deleterious(0) probably_damaging(1) TCGA-C5-A8XK-01 17 30669098 30669098 C G C17orf75 Missense_Mutation p.E21Q 0.44 tolerated(0.11) benign(0.053) TCGA-C5-A8XK-01 17 33289044 33289044 C T ZNF830 Silent p.L153L 0.31 TCGA-C5-A8XK-01 17 38241020 38241020 C G THRA Silent p.R176R 0.22 TCGA-C5-A8XK-01 17 38340882 38340882 G A RAPGEFL1 Missense_Mutation p.R56Q 0.45 tolerated(0.31) benign(0.024) TCGA-C5-A8XK-01 17 39253762 39253762 G C KRTAP4-8 3'UTR 0.31 TCGA-C5-A8XK-01 17 39253987 39253987 G C KRTAP4-8 Missense_Mutation p.S117C 0.16 deleterious(0) unknown(0) TCGA-C5-A8XK-01 17 40723953 40723953 C T MLX 3'UTR 0.35 TCGA-C5-A8XK-01 17 41020606 41020606 C G AOC4P RNA 0.48 TCGA-C5-A8XK-01 17 42513910 42513910 C T GPATCH8 Missense_Mutation p.R66K 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-C5-A8XK-01 17 45102067 45102067 G C RP11-156P1.3 Intron 0.32 TCGA-C5-A8XK-01 17 5086346 5086346 T G ZNF594 Missense_Mutation p.K402N 0.25 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XK-01 17 61678700 61678700 G C TACO1 Missense_Mutation p.L86F 0.30 tolerated(0.06) possibly_damaging(0.806) TCGA-C5-A8XK-01 17 61902683 61902683 G C FTSJ3 Missense_Mutation p.Q172E 0.21 deleterious(0.04) benign(0.345) TCGA-C5-A8XK-01 17 71354298 71354298 G C SDK2 Missense_Mutation p.S1838C 0.23 deleterious(0) probably_damaging(0.951) TCGA-C5-A8XK-01 17 7365441 7365441 C G ZBTB4 Missense_Mutation p.D954H 0.43 probably_damaging(0.99) TCGA-C5-A8XK-01 17 79205306 79205306 T G ENTHD2 Intron 0.14 TCGA-C5-A8XK-01 18 18529974 18529974 G A ROCK1 3'UTR 0.17 TCGA-C5-A8XK-01 18 19110158 19110158 C A ESCO1 3'UTR 0.29 TCGA-C5-A8XK-01 18 19110263 19110263 C G ESCO1 3'UTR 0.29 TCGA-C5-A8XK-01 18 28649044 28649044 C G DSC2 Missense_Mutation p.G775A 0.50 deleterious(0.02) benign(0.198) TCGA-C5-A8XK-01 18 30094028 30094028 G C WBP11P1 RNA 0.33 TCGA-C5-A8XK-01 18 43445631 43445631 C G EPG5 Missense_Mutation p.E2239Q 0.14 tolerated(0.07) benign(0.265) TCGA-C5-A8XK-01 18 60051996 60051996 G A TNFRSF11A Missense_Mutation p.G527E 0.39 deleterious(0) probably_damaging(1) TCGA-C5-A8XK-01 18 9282468 9282468 A T ANKRD12 3'UTR 0.06 TCGA-C5-A8XK-01 19 12061297 12061297 C G ZNF700 3'UTR 0.42 TCGA-C5-A8XK-01 19 1223012 1223012 G A STK11 Missense_Mutation p.E317K 0.37 tolerated(0.51) benign(0.15) TCGA-C5-A8XK-01 19 1226467 1226467 G C STK11 Missense_Mutation p.E375Q 0.62 tolerated(0.18) benign(0.011) TCGA-C5-A8XK-01 19 14093037 14093037 G A RFX1 Missense_Mutation p.L173F 0.49 tolerated_low_confidence(0.07) benign(0.002) TCGA-C5-A8XK-01 19 1421195 1421195 G A DAZAP1 Missense_Mutation p.G118S 0.70 deleterious(0) unknown(0) TCGA-C5-A8XK-01 19 14676680 14676680 C G TECR Silent p.L308L 0.30 TCGA-C5-A8XK-01 19 14754941 14754941 G A EMR3 Silent p.V343V 0.35 TCGA-C5-A8XK-01 19 16686603 16686603 C A MED26 3'UTR 0.36 TCGA-C5-A8XK-01 19 2807665 2807665 G A THOP1 Missense_Mutation p.G371D 0.10 tolerated(0.67) benign(0.033) TCGA-C5-A8XK-01 19 32971335 32971335 G A DPY19L3 Missense_Mutation p.E621K 0.17 tolerated(0.05) benign(0.104) TCGA-C5-A8XK-01 19 35175849 35175849 C T ZNF302 Missense_Mutation p.H303Y 0.33 deleterious(0) probably_damaging(0.984) TCGA-C5-A8XK-01 19 41601698 41601698 G A CYP2A13 Missense_Mutation p.R446K 0.27 tolerated(0.05) benign(0.032) TCGA-C5-A8XK-01 19 42265992 42265992 C T CEACAM6 Silent p.I273I 0.17 TCGA-C5-A8XK-01 19 42270185 42270185 C A CEACAM6 3'UTR 0.25 TCGA-C5-A8XK-01 19 44418703 44418703 C G ZNF45 Silent p.L295L 0.40 TCGA-C5-A8XK-01 19 45026919 45026919 G C CEACAM20 RNA 0.31 TCGA-C5-A8XK-01 19 4529820 4529820 G C PLIN5 Silent p.P105P 0.54 TCGA-C5-A8XK-01 19 45543500 45543500 G T CLASRP Silent p.R10R 0.43 TCGA-C5-A8XK-01 19 48342887 48342887 C T CRX Missense_Mutation p.S188F 0.28 tolerated(0.07) possibly_damaging(0.776) TCGA-C5-A8XK-01 19 49793701 49793701 G T SLC6A16 Intron 0.41 TCGA-C5-A8XK-01 19 50316463 50316463 G A FUZ 5'UTR 0.14 TCGA-C5-A8XK-01 19 50733876 50733876 C G MYH14 Silent p.L323L 0.33 TCGA-C5-A8XK-01 19 52569887 52569887 G A ZNF841 Silent p.L416L 0.28 TCGA-C5-A8XK-01 19 53431657 53431657 C G ZNF321P 3'Flank 0.37 TCGA-C5-A8XK-01 19 53740817 53740817 G A ZNF677 Missense_Mutation p.S388L 0.36 deleterious(0.02) benign(0.008) TCGA-C5-A8XK-01 19 53994399 53994399 G A ZNF813 Missense_Mutation p.D305N 0.15 deleterious(0.02) possibly_damaging(0.809) TCGA-C5-A8XK-01 19 57352866 57352866 G A PEG3 5'Flank 0.27 TCGA-C5-A8XK-01 19 57988734 57988734 C T ZNF772 5'UTR 0.28 TCGA-C5-A8XK-01 19 58596087 58596087 C T ZSCAN18 Missense_Mutation p.E556K 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-C5-A8XK-01 19 58805574 58805574 C G ZNF8 Missense_Mutation p.P134A 0.40 tolerated(0.87) benign(0.006) TCGA-C5-A8XK-01 19 7511949 7511949 G C ARHGEF18 Missense_Mutation p.E356D 0.55 tolerated(0.17) benign(0.152) TCGA-C5-A8XK-01 1 110050220 110050220 G A AMIGO1 Missense_Mutation p.R439W 0.31 deleterious(0) probably_damaging(0.995) TCGA-C5-A8XK-01 1 110199011 110199011 C T GSTM4 5'UTR 0.39 TCGA-C5-A8XK-01 1 113638568 113638568 C G LRIG2 Silent p.L292L 0.44 TCGA-C5-A8XK-01 1 12820737 12820737 C G C1orf158 Silent p.L146L 0.41 TCGA-C5-A8XK-01 1 145293195 145293195 G C NBPF10 5'Flank 0.11 TCGA-C5-A8XK-01 1 145562172 145562172 G A ANKRD35 Silent p.L620L 0.37 TCGA-C5-A8XK-01 1 149871686 149871686 G A BOLA1 Missense_Mutation p.G25E 0.28 tolerated(0.25) benign(0.002) TCGA-C5-A8XK-01 1 149936114 149936114 G - OTUD7B Intron 0.29 TCGA-C5-A8XK-01 1 152083689 152083689 G C TCHH Silent p.L668L 0.23 TCGA-C5-A8XK-01 1 152283589 152283589 G T FLG Nonsense_Mutation p.S1258* 0.36 TCGA-C5-A8XK-01 1 152283675 152283675 G A FLG Silent p.G1229G 0.37 TCGA-C5-A8XK-01 1 152884283 152884283 C T IVL 3'UTR 0.44 TCGA-C5-A8XK-01 1 153741404 153741404 G A INTS3 Silent p.L760L 0.36 TCGA-C5-A8XK-01 1 153921782 153921782 G C CRTC2 Missense_Mutation p.L495V 0.35 tolerated(0.78) benign(0.008) TCGA-C5-A8XK-01 1 154938908 154938908 C T SHC1 Missense_Mutation p.E357K 0.33 tolerated(0.17) benign(0.064) TCGA-C5-A8XK-01 1 154940250 154940250 C G SHC1 Missense_Mutation p.E294Q 0.22 deleterious(0) possibly_damaging(0.824) TCGA-C5-A8XK-01 1 155732123 155732123 C T GON4L Missense_Mutation p.R1590Q 0.35 deleterious(0) possibly_damaging(0.776) TCGA-C5-A8XK-01 1 155736446 155736446 C G GON4L Missense_Mutation p.E940Q 0.42 deleterious(0.05) probably_damaging(0.979) TCGA-C5-A8XK-01 1 156449450 156449450 G A MEF2D Silent p.L179L 0.15 TCGA-C5-A8XK-01 1 156639242 156639242 G A NES Nonsense_Mutation p.Q1580* 0.33 TCGA-C5-A8XK-01 1 15707266 15707266 G C FHAD1 Missense_Mutation p.E472Q 0.51 deleterious(0.01) possibly_damaging(0.826) TCGA-C5-A8XK-01 1 160604405 160604405 G A SLAMF1 Missense_Mutation p.S233L 0.26 tolerated(0.65) benign(0.015) TCGA-C5-A8XK-01 1 16358305 16358305 G A CLCNKA Missense_Mutation p.D575N 0.26 tolerated(0.14) benign(0.085) TCGA-C5-A8XK-01 1 182827319 182827319 C T DHX9 Missense_Mutation p.H252Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-C5-A8XK-01 1 183111758 183111758 G C LAMC1 Missense_Mutation p.D1555H 0.29 deleterious(0.03) possibly_damaging(0.868) TCGA-C5-A8XK-01 1 200377758 200377758 C G ZNF281 Missense_Mutation p.R359T 0.11 deleterious(0) probably_damaging(0.997) TCGA-C5-A8XK-01 1 204190337 204190337 C T PLEKHA6 3'UTR 0.26 TCGA-C5-A8XK-01 1 226349380 226349380 C G ACBD3 Missense_Mutation p.E194Q 0.44 tolerated(0.1) benign(0.403) TCGA-C5-A8XK-01 1 228511243 228511243 C G OBSCN Silent p.V6153V 0.28 TCGA-C5-A8XK-01 1 228645538 228645538 G T HIST3H2A 5'UTR 0.41 TCGA-C5-A8XK-01 1 241936215 241936215 C T WDR64 Silent p.L794L 0.48 TCGA-C5-A8XK-01 1 243652406 243652406 G A SDCCAG8 Silent p.Q692Q 0.35 TCGA-C5-A8XK-01 1 245849915 245849915 C A KIF26B Silent p.I1210I 0.35 TCGA-C5-A8XK-01 1 245850062 245850062 C T KIF26B Silent p.L1259L 0.26 TCGA-C5-A8XK-01 1 249143343 249143343 G C ZNF672 3'UTR 0.47 TCGA-C5-A8XK-01 1 32542833 32542833 C G TMEM39B Silent p.L168L 0.14 TCGA-C5-A8XK-01 1 32706248 32706248 C T MTMR9LP RNA 0.30 TCGA-C5-A8XK-01 1 3342249 3342249 G A PRDM16 Missense_Mutation p.R1015H 0.39 deleterious(0) probably_damaging(0.989) TCGA-C5-A8XK-01 1 40313267 40313267 G C TRIT1 Missense_Mutation p.T294S 0.31 tolerated(0.6) benign(0.015) TCGA-C5-A8XK-01 1 40366719 40366719 C T MYCL Missense_Mutation p.D160N 0.38 tolerated(0.13) benign(0.248) TCGA-C5-A8XK-01 1 46206576 46206576 C G IPP Missense_Mutation p.E241Q 0.42 deleterious(0.02) possibly_damaging(0.832) TCGA-C5-A8XK-01 1 46769487 46769487 G A UQCRH Missense_Mutation p.E17K 0.47 tolerated(1) benign(0.001) TCGA-C5-A8XK-01 1 47402372 47402372 A G CYP4A11 Silent p.Y158Y 0.13 TCGA-C5-A8XK-01 1 47611535 47611535 C T CYP4A22 Intron 0.32 TCGA-C5-A8XK-01 1 55188370 55188370 G C TTC4 Silent p.L164L 0.32 TCGA-C5-A8XK-01 1 62253536 62253536 C G INADL Silent p.V320V 0.33 TCGA-C5-A8XK-01 1 62916552 62916552 C G USP1 Missense_Mutation p.S753C 0.29 tolerated(0.06) possibly_damaging(0.473) TCGA-C5-A8XK-01 1 71872641 71872641 G A NEGR1 3'UTR 0.37 TCGA-C5-A8XK-01 1 78354398 78354398 C T NEXN 5'UTR 0.40 TCGA-C5-A8XK-01 1 91818677 91818677 C T HFM1 Missense_Mutation p.A588T 0.07 deleterious(0) probably_damaging(1) TCGA-C5-A8XK-01 20 3053079 3053079 G C OXT 3'UTR 0.37 TCGA-C5-A8XK-01 20 52185535 52185535 C T ZNF217 3'UTR 0.32 TCGA-C5-A8XK-01 21 30716733 30716733 C T BACH1 3'UTR 0.35 TCGA-C5-A8XK-01 22 18314683 18314683 C G MICAL3 Missense_Mutation p.E998Q 0.39 benign(0.355) TCGA-C5-A8XK-01 22 18317222 18317222 C A MICAL3 Intron 0.36 TCGA-C5-A8XK-01 22 21380945 21380945 C T P2RX6 3'UTR 0.23 TCGA-C5-A8XK-01 22 22599261 22599261 C G VPREB1 Silent p.V12V 0.25 TCGA-C5-A8XK-01 22 23214195 23214195 G T IGLV4-3 Missense_Mutation p.D118Y 0.28 deleterious(0.02) benign(0.039) TCGA-C5-A8XK-01 22 28394539 28394539 G C TTC28 Missense_Mutation p.S1703C 0.38 deleterious(0) possibly_damaging(0.859) TCGA-C5-A8XK-01 22 30070871 30070871 G A NF2 Missense_Mutation p.E463K 0.34 tolerated(0.49) possibly_damaging(0.713) TCGA-C5-A8XK-01 22 31858925 31858925 C T EIF4ENIF1 Silent p.V260V 0.43 TCGA-C5-A8XK-01 22 37334161 37334161 C G CSF2RB Missense_Mutation p.P771A 0.33 tolerated(0.21) benign(0.2) TCGA-C5-A8XK-01 22 37766757 37766757 C T ELFN2 3'UTR 0.23 TCGA-C5-A8XK-01 22 50691816 50691816 G A MAPK12 3'UTR 0.39 TCGA-C5-A8XK-01 2 102448312 102448312 G C MAP4K4 Missense_Mutation p.R213T 0.36 deleterious_low_confidence(0) unknown(0) TCGA-C5-A8XK-01 2 103281797 103281797 C G SLC9A2 Nonsense_Mutation p.S331* 0.38 TCGA-C5-A8XK-01 2 109088504 109088504 G C GCC2 Missense_Mutation p.E907Q 0.35 tolerated(0.16) possibly_damaging(0.638) TCGA-C5-A8XK-01 2 109401254 109401254 G A RANBP2 3'UTR 0.31 TCGA-C5-A8XK-01 2 113033450 113033450 C A ZC3H6 5'UTR 0.34 TCGA-C5-A8XK-01 2 132273214 132273214 C T AC093838.4 RNA 0.34 TCGA-C5-A8XK-01 2 15564486 15564486 C A NBAS Missense_Mutation p.D844Y 0.37 deleterious(0.01) possibly_damaging(0.663) TCGA-C5-A8XK-01 2 159459589 159459589 G A PKP4 Missense_Mutation p.E85K 0.44 deleterious(0) possibly_damaging(0.881) TCGA-C5-A8XK-01 2 165945583 165945583 G T SCN3A 3'UTR 0.35 TCGA-C5-A8XK-01 2 165946004 165946004 G C SCN3A 3'UTR 0.23 TCGA-C5-A8XK-01 2 166769131 166769131 C T TTC21B Missense_Mutation p.E739K 0.36 deleterious(0) probably_damaging(0.938) TCGA-C5-A8XK-01 2 169952326 169952326 C G DHRS9 3'UTR 0.47 TCGA-C5-A8XK-01 2 17881495 17881495 C G SMC6 Missense_Mutation p.E792Q 0.23 deleterious(0.01) possibly_damaging(0.87) TCGA-C5-A8XK-01 2 185800685 185800685 G A ZNF804A Missense_Mutation p.E188K 0.48 tolerated(0.32) probably_damaging(0.971) TCGA-C5-A8XK-01 2 197738423 197738423 G A PGAP1 Silent p.L496L 0.47 TCGA-C5-A8XK-01 2 197738425 197738425 A G PGAP1 Missense_Mutation p.L495P 0.47 deleterious(0) probably_damaging(0.967) TCGA-C5-A8XK-01 2 227729838 227729838 C G RHBDD1 Missense_Mutation p.F143L 0.11 deleterious(0) probably_damaging(0.966) TCGA-C5-A8XK-01 2 238267693 238267693 C A COL6A3 Silent p.G2131G 0.57 TCGA-C5-A8XK-01 2 37543560 37543560 G C PRKD3 Silent p.L36L 0.36 TCGA-C5-A8XK-01 2 40656508 40656508 C G SLC8A1 Missense_Mutation p.D305H 0.41 deleterious(0.01) probably_damaging(0.966) TCGA-C5-A8XK-01 2 55077273 55077273 C T EML6 Silent p.I454I 0.16 TCGA-C5-A8XK-01 2 55461274 55461274 G A RPS27A Silent p.Q41Q 0.23 TCGA-C5-A8XK-01 2 55571557 55571557 C G CCDC88A Missense_Mutation p.E379Q 0.50 tolerated(0.07) benign(0.041) TCGA-C5-A8XK-01 2 63283812 63283812 G A OTX1 3'UTR 0.37 TCGA-C5-A8XK-01 2 66666993 66666993 C G MEIS1 Silent p.L86L 0.33 TCGA-C5-A8XK-01 2 71036974 71036974 A C CLEC4F Missense_Mutation p.F519V 0.17 tolerated(0.3) benign(0.006) TCGA-C5-A8XK-01 2 73676292 73676292 C G ALMS1 Missense_Mutation p.L879V 0.31 possibly_damaging(0.797) TCGA-C5-A8XK-01 2 74699163 74699163 G A MRPL53 3'UTR 0.56 TCGA-C5-A8XK-01 2 88423965 88423965 C G FABP1 Intron 0.38 TCGA-C5-A8XK-01 3 12475542 12475542 G A PPARG Silent p.Q472Q 0.53 TCGA-C5-A8XK-01 3 124839467 124839467 C T SLC12A8 Missense_Mutation p.G267D 0.47 deleterious(0) probably_damaging(0.986) TCGA-C5-A8XK-01 3 12880945 12880945 C T RPL32 Missense_Mutation p.G61R 0.23 tolerated(0.14) benign(0.177) TCGA-C5-A8XK-01 3 149488431 149488431 C G ANKUB1 Missense_Mutation p.G161A 0.41 deleterious(0.01) probably_damaging(0.976) TCGA-C5-A8XK-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.32 deleterious(0.02) probably_damaging(0.959) TCGA-C5-A8XK-01 3 179527263 179527263 C G PEX5L Missense_Mutation p.D450H 0.32 tolerated(0.25) benign(0.015) TCGA-C5-A8XK-01 3 183910898 183910898 G A ABCF3 Missense_Mutation p.E587K 0.13 tolerated(0.42) benign(0.166) TCGA-C5-A8XK-01 3 183911201 183911201 G C ABCF3 Missense_Mutation p.E644D 0.37 deleterious(0.03) possibly_damaging(0.606) TCGA-C5-A8XK-01 3 183911336 183911336 G A ABCF3 Silent p.V660V 0.26 TCGA-C5-A8XK-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.38 deleterious_low_confidence(0.02) benign(0.001) TCGA-C5-A8XK-01 3 185969677 185969677 C G DGKG Silent p.L544L 0.43 TCGA-C5-A8XK-01 3 186394909 186394909 C T HRG Missense_Mutation p.S272F 0.34 tolerated(0.46) benign(0.005) TCGA-C5-A8XK-01 3 38590437 38590438 - T SCN5A 3'UTR 0.15 TCGA-C5-A8XK-01 3 38739986 38739986 G A SCN10A Silent p.I1575I 0.26 TCGA-C5-A8XK-01 3 49067190 49067190 C TTTT QRICH1 3'UTR 0.10 TCGA-C5-A8XK-01 3 49149442 49149442 G A USP19 Silent p.L933L 0.38 TCGA-C5-A8XK-01 3 54596935 54596935 A G CACNA2D3 Missense_Mutation p.K218R 0.29 deleterious(0) possibly_damaging(0.543) TCGA-C5-A8XK-01 3 67061111 67061111 G A KBTBD8 3'UTR 0.30 TCGA-C5-A8XK-01 3 9952719 9952719 G T IL17RE Missense_Mutation p.D325Y 0.28 deleterious(0) possibly_damaging(0.492) TCGA-C5-A8XK-01 4 107114892 107114892 C T TBCK Missense_Mutation p.D645N 0.45 deleterious(0) probably_damaging(0.997) TCGA-C5-A8XK-01 4 128802235 128802235 G T PLK4 5'UTR 0.71 TCGA-C5-A8XK-01 4 156136278 156136278 G C NPY2R 3'UTR 0.53 TCGA-C5-A8XK-01 4 72363292 72363292 G T SLC4A4 Silent p.G683G 0.44 TCGA-C5-A8XK-01 4 79353660 79353660 G A FRAS1 Missense_Mutation p.E1707K 0.36 benign(0.004) TCGA-C5-A8XK-01 4 83274935 83274935 G T HNRNPD 3'UTR 0.46 TCGA-C5-A8XK-01 5 108436110 108436110 C T FER Silent p.L646L 0.31 TCGA-C5-A8XK-01 5 110436397 110436397 G A WDR36 Silent p.L229L 0.27 TCGA-C5-A8XK-01 5 136313901 136313901 C G SPOCK1 3'UTR 0.25 TCGA-C5-A8XK-01 5 140307165 140307165 G A PCDHAC1 Missense_Mutation p.A230T 0.50 tolerated(0.13) benign(0.098) TCGA-C5-A8XK-01 5 140558774 140558774 C T PCDHB8 Nonsense_Mutation p.Q387* 0.20 TCGA-C5-A8XK-01 5 142680123 142680123 C T NR3C1 Silent p.R559R 0.34 TCGA-C5-A8XK-01 5 148876381 148876381 C A CSNK1A1 3'Flank 0.28 TCGA-C5-A8XK-01 5 149495250 149495250 C T PDGFRB 3'UTR 0.52 TCGA-C5-A8XK-01 5 149578817 149578817 G A SLC6A7 Missense_Mutation p.S204N 0.23 deleterious(0) probably_damaging(0.966) TCGA-C5-A8XK-01 5 149681784 149681784 G A ARSI Silent p.F51F 0.23 TCGA-C5-A8XK-01 5 168271603 168271603 G A SLIT3 Silent p.R181R 0.15 TCGA-C5-A8XK-01 5 169310831 169310831 C T FAM196B Silent p.V24V 0.48 TCGA-C5-A8XK-01 5 176868759 176868759 G A GRK6 Silent p.A567A 0.35 TCGA-C5-A8XK-01 5 177565208 177565208 G C RMND5B Missense_Mutation p.E30Q 0.39 tolerated(0.41) benign(0.027) TCGA-C5-A8XK-01 5 179192804 179192804 G C MAML1 Missense_Mutation p.E265Q 0.15 tolerated(0.07) probably_damaging(0.999) TCGA-C5-A8XK-01 5 180659824 180659824 C T TRIM41 Nonsense_Mutation p.Q359* 0.13 TCGA-C5-A8XK-01 5 32233927 32233927 C G MTMR12 Silent p.V542V 0.05 TCGA-C5-A8XK-01 5 45267343 45267343 A CT HCN1 Frame_Shift_Ins p.L544Qfs*13 0.13 TCGA-C5-A8XK-01 5 53816767 53816767 C G SNX18 3'UTR 0.28 TCGA-C5-A8XK-01 5 64892258 64892258 G C TRIM23 Silent p.L470L 0.25 TCGA-C5-A8XK-01 5 72848536 72848536 G A ANKRA2 3'UTR 0.35 TCGA-C5-A8XK-01 5 77590312 77590312 G A AP3B1 Missense_Mutation p.S31L 0.40 deleterious(0.01) benign(0.005) TCGA-C5-A8XK-01 5 89979675 89979675 C T GPR98 Silent p.F1979F 0.37 TCGA-C5-A8XK-01 6 129937404 129937404 C G ARHGAP18 Missense_Mutation p.D333H 0.37 deleterious(0) probably_damaging(0.966) TCGA-C5-A8XK-01 6 138752389 138752389 C T NHSL1 Missense_Mutation p.M1035I 0.15 deleterious(0.01) possibly_damaging(0.756) TCGA-C5-A8XK-01 6 157527564 157527564 C T ARID1B Silent p.I1763I 0.23 TCGA-C5-A8XK-01 6 158923293 158923293 G A TULP4 Silent p.K866K 0.39 TCGA-C5-A8XK-01 6 160523590 160523590 G A IGF2R Silent p.Q2294Q 0.25 TCGA-C5-A8XK-01 6 168372467 168372467 G C RP3-470B24.5 3'Flank 0.43 TCGA-C5-A8XK-01 6 21595944 21595944 C T SOX4 Silent p.G393G 0.52 TCGA-C5-A8XK-01 6 29012867 29012867 C G OR2W1 Missense_Mutation p.G29A 0.32 tolerated(0.27) benign(0.129) TCGA-C5-A8XK-01 6 31238968 31238982 GGTGATCTGAGCCGC - HLA-C In_Frame_Del p.A163_T167del 0.27 TCGA-C5-A8XK-01 6 3154108 3154108 C G TUBB2A Missense_Mutation p.D443H 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-C5-A8XK-01 6 3154234 3154234 C T TUBB2A Missense_Mutation p.E401K 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-C5-A8XK-01 6 31921859 31921859 C G NELFE Missense_Mutation p.E314Q 0.53 deleterious(0.03) unknown(0) TCGA-C5-A8XK-01 6 31922560 31922560 C G NELFE Missense_Mutation p.E172Q 0.36 tolerated_low_confidence(0.14) possibly_damaging(0.628) TCGA-C5-A8XK-01 6 31923027 31923027 C G NELFE Missense_Mutation p.R112T 0.34 tolerated(0.12) possibly_damaging(0.78) TCGA-C5-A8XK-01 6 32818189 32818189 C T TAP1 Missense_Mutation p.E446K 0.26 deleterious(0) probably_damaging(0.987) TCGA-C5-A8XK-01 6 35762924 35762924 C G CLPS Nonstop_Mutation p.*113Sext*42 0.14 TCGA-C5-A8XK-01 6 35802692 35802692 G A SRPK1 3'UTR 0.45 TCGA-C5-A8XK-01 6 36106757 36106757 G A MAPK13 Missense_Mutation p.E315K 0.42 tolerated(0.12) benign(0.304) TCGA-C5-A8XK-01 6 64394966 64394966 C T PHF3 Missense_Mutation p.S448L 0.27 tolerated_low_confidence(0.32) benign(0.001) TCGA-C5-A8XK-01 6 76570800 76570800 C G MYO6 Missense_Mutation p.Q512E 0.34 deleterious(0) unknown(0) TCGA-C5-A8XK-01 6 84630806 84630806 C G CYB5R4 Missense_Mutation p.I190M 0.41 tolerated(0.58) benign(0.026) TCGA-C5-A8XK-01 6 90402418 90402418 G A MDN1 Missense_Mutation p.S3444L 0.31 possibly_damaging(0.716) TCGA-C5-A8XK-01 6 96997345 96997345 T G UFL1 Silent p.T526T 0.40 TCGA-C5-A8XK-01 7 101838793 101838793 G T CUX1 Missense_Mutation p.A389S 0.76 tolerated(1) unknown(0) TCGA-C5-A8XK-01 7 103143646 103143646 A T RELN Missense_Mutation p.I2769N 0.16 tolerated(0.57) benign(0.002) TCGA-C5-A8XK-01 7 143792658 143792658 T G OR2A12 Missense_Mutation p.L153R 0.53 deleterious(0) possibly_damaging(0.835) TCGA-C5-A8XK-01 7 21551846 21551846 G C SP4 3'UTR 0.26 TCGA-C5-A8XK-01 7 30197567 30197567 G A MTURN 3'UTR 0.17 TCGA-C5-A8XK-01 7 34193674 34193674 G T BMPER 3'UTR 0.62 TCGA-C5-A8XK-01 7 35674927 35674927 C T HERPUD2 Missense_Mutation p.M253I 0.86 tolerated(0.29) benign(0) TCGA-C5-A8XK-01 7 55238112 55238112 G C EGFR Intron 0.66 TCGA-C5-A8XK-01 7 5632745 5632745 G C FSCN1 Missense_Mutation p.V60L 0.76 tolerated(0.11) benign(0.014) TCGA-C5-A8XK-01 7 63808725 63808725 G A ZNF736 Missense_Mutation p.E162K 0.62 tolerated(0.34) benign(0.012) TCGA-C5-A8XK-01 7 72951593 72951593 G A BCL7B 3'UTR 0.23 TCGA-C5-A8XK-01 8 101730507 101730507 C T PABPC1 Silent p.A65A 0.42 TCGA-C5-A8XK-01 8 116430624 116430624 G C TRPS1 Silent p.L919L 0.15 TCGA-C5-A8XK-01 8 117861187 117861187 G A RAD21 Nonsense_Mutation p.Q568* 0.54 TCGA-C5-A8XK-01 8 117887165 117887165 T G RAD21 5'Flank 0.33 TCGA-C5-A8XK-01 8 11995788 11995788 G A USP17L2 Missense_Mutation p.A161V 0.68 deleterious(0) probably_damaging(0.999) TCGA-C5-A8XK-01 8 139790647 139790647 C T COL22A1 Silent p.G569G 0.06 TCGA-C5-A8XK-01 8 144358776 144358776 C T GLI4 Silent p.I311I 0.43 TCGA-C5-A8XK-01 8 22037970 22037970 C T BMP1 Missense_Mutation p.R351C 0.74 deleterious(0) probably_damaging(0.997) TCGA-C5-A8XK-01 8 42692786 42692786 C G THAP1 3'UTR 0.29 TCGA-C5-A8XK-01 8 59409589 59409589 G A CYP7A1 Missense_Mutation p.S161L 0.34 tolerated(0.37) benign(0.008) TCGA-C5-A8XK-01 8 73984077 73984077 G A SBSPON Silent p.F146F 0.15 TCGA-C5-A8XK-01 8 82713092 82713092 C G SNX16 3'UTR 0.38 TCGA-C5-A8XK-01 8 95680373 95680373 C T ESRP1 Silent p.L376L 0.23 TCGA-C5-A8XK-01 9 100965578 100965578 C T TBC1D2 Missense_Mutation p.A755T 0.07 tolerated(0.18) benign(0.275) TCGA-C5-A8XK-01 9 104184134 104184134 G - ALDOB Frame_Shift_Del p.A351Vfs*22 0.16 TCGA-C5-A8XK-01 9 130469358 130469358 C G C9orf117 Silent p.V16V 0.43 TCGA-C5-A8XK-01 9 131231512 131231512 C G ODF2 Silent p.V100V 0.40 TCGA-C5-A8XK-01 9 13247792 13247792 G A MPDZ Missense_Mutation p.R9W 0.17 deleterious(0) probably_damaging(1) TCGA-C5-A8XK-01 9 134067605 134067605 G C NUP214 Missense_Mutation p.K1195N 0.21 possibly_damaging(0.583) TCGA-C5-A8XK-01 9 16738437 16738437 G A BNC2 Missense_Mutation p.S17L 0.33 deleterious_low_confidence(0) unknown(0) TCGA-C5-A8XK-01 9 26997740 26997740 G A LRRC19 Missense_Mutation p.S194L 0.31 deleterious(0) possibly_damaging(0.856) TCGA-C5-A8XK-01 9 3346716 3346716 G T RFX3 Missense_Mutation p.Q56K 0.38 deleterious(0.01) probably_damaging(0.96) TCGA-C5-A8XK-01 9 3346726 3346726 G C RFX3 Silent p.V52V 0.37 TCGA-C5-A8XK-01 9 35719567 35719567 G C TLN1 Missense_Mutation p.Q546E 0.43 deleterious(0.01) probably_damaging(0.991) TCGA-C5-A8XK-01 9 37327796 37327796 G A ZCCHC7 Missense_Mutation p.A318T 0.26 tolerated(0.06) benign(0.098) TCGA-C5-A8XK-01 9 66457323 66457323 C G RP11-262H14.1 RNA 0.09 TCGA-C5-A8XK-01 9 79324036 79324036 C T PRUNE2 Missense_Mutation p.E1052K 0.47 tolerated(1) benign(0) TCGA-C5-A8XK-01 9 80020895 80020895 G A VPS13A Missense_Mutation p.E3131K 0.41 tolerated(0.14) probably_damaging(0.999) TCGA-C5-A8XK-01 9 82340590 82340590 T C TLE4 3'Flank 0.27 TCGA-C5-A8XK-01 9 84609134 84609134 G T SPATA31D1 Missense_Mutation p.G1250V 0.45 tolerated(0.22) benign(0.047) TCGA-C5-A8XK-01 9 93374709 93374709 C G DIRAS2 3'UTR 0.37 TCGA-C5-A8XK-01 9 96054836 96054836 G C WNK2 Missense_Mutation p.G1734R 0.36 unknown(0) TCGA-C5-A8XK-01 X 100169869 100169869 C A XKRX Missense_Mutation p.V270L 0.27 tolerated(1) benign(0.002) TCGA-C5-A8XK-01 X 100878176 100878176 G C ARMCX3 5'UTR 0.50 TCGA-C5-A8XK-01 X 119249649 119249649 G C RHOXF1 Missense_Mutation p.P42A 0.40 tolerated(0.76) possibly_damaging(0.811) TCGA-C5-A8XK-01 X 138667316 138667316 G A MCF2 Missense_Mutation p.S961F 0.64 deleterious(0.03) benign(0.14) TCGA-C5-A8XK-01 X 147924914 147924914 G A AFF2 Missense_Mutation p.D407N 0.41 tolerated(0.06) possibly_damaging(0.467) TCGA-C5-A8XK-01 X 15833863 15833863 G A ZRSR2 Silent p.T207T 0.09 TCGA-C5-A8XK-01 X 73061972 73061972 C T XIST RNA 0.38 TCGA-C5-A8YQ-01 10 101295837 101295837 G A NKX2-3 3'UTR 0.29 TCGA-C5-A8YQ-01 10 102748136 102748136 G A C10orf2 Missense_Mutation p.A57T 0.50 tolerated(0.44) benign(0.003) TCGA-C5-A8YQ-01 10 105750461 105750461 C A SLK Missense_Mutation p.A60D 0.22 deleterious(0) probably_damaging(0.977) TCGA-C5-A8YQ-01 10 112839338 112839338 A C ADRA2A 3'UTR 0.46 TCGA-C5-A8YQ-01 10 112839339 112839339 G C ADRA2A 3'UTR 0.46 TCGA-C5-A8YQ-01 10 118137966 118137966 G C CCDC172 Missense_Mutation p.D229H 0.05 deleterious(0.01) possibly_damaging(0.876) TCGA-C5-A8YQ-01 10 135378994 135378994 C T SYCE1 Missense_Mutation p.A14T 0.11 tolerated(0.12) benign(0.374) TCGA-C5-A8YQ-01 10 15113808 15113808 C G OLAH Missense_Mutation p.S249C 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-C5-A8YQ-01 10 16547029 16547029 G C PTER Missense_Mutation p.D237H 0.27 deleterious(0.02) benign(0.072) TCGA-C5-A8YQ-01 10 20568815 20568815 T C PLXDC2 3'UTR 0.13 TCGA-C5-A8YQ-01 10 25465249 25465249 C G GPR158 Missense_Mutation p.F300L 0.33 deleterious(0.03) possibly_damaging(0.642) TCGA-C5-A8YQ-01 10 25887103 25887103 G C GPR158 Missense_Mutation p.E850Q 0.31 deleterious(0.01) benign(0.239) TCGA-C5-A8YQ-01 10 38344954 38344954 G C ZNF33A Missense_Mutation p.E634D 0.24 tolerated(0.05) benign(0.06) TCGA-C5-A8YQ-01 10 43325783 43325783 G C BMS1 Missense_Mutation p.K1177N 0.27 deleterious(0.04) benign(0.065) TCGA-C5-A8YQ-01 10 50535228 50535228 C T C10orf71 3'UTR 0.26 TCGA-C5-A8YQ-01 10 72633338 72633338 C G SGPL1 Silent p.L430L 0.39 TCGA-C5-A8YQ-01 10 75552513 75552513 G A ZSWIM8 Missense_Mutation p.G739E 0.23 tolerated(1) benign(0.007) TCGA-C5-A8YQ-01 10 86223740 86223740 C T CCSER2 Missense_Mutation p.P706S 0.09 deleterious(0) possibly_damaging(0.758) TCGA-C5-A8YQ-01 10 91144142 91144142 A C IFIT1B Missense_Mutation p.K358Q 0.20 deleterious(0.04) possibly_damaging(0.588) TCGA-C5-A8YQ-01 11 111749847 111749847 G C FDXACB1 Missense_Mutation p.R4G 0.36 deleterious(0) probably_damaging(0.934) TCGA-C5-A8YQ-01 11 113934787 113934787 C A ZBTB16 Missense_Mutation p.D255E 0.78 tolerated(1) benign(0) TCGA-C5-A8YQ-01 11 11470302 11470302 G C GALNT18 Silent p.L139L 0.36 TCGA-C5-A8YQ-01 11 14280885 14280885 G A RP11-21L19.1 3'Flank 0.35 TCGA-C5-A8YQ-01 11 28352244 28352244 C T METTL15 Silent p.H360H 0.33 TCGA-C5-A8YQ-01 11 45672410 45672410 C G CHST1 Missense_Mutation p.A22P 0.36 deleterious(0) probably_damaging(0.999) TCGA-C5-A8YQ-01 11 5172861 5172861 G C OR52A1 Missense_Mutation p.H247D 0.33 deleterious(0.01) benign(0.35) TCGA-C5-A8YQ-01 11 5289652 5289652 A G HBE1 3'UTR 0.16 TCGA-C5-A8YQ-01 11 640633 640633 G A DRD4 3'UTR 0.46 TCGA-C5-A8YQ-01 11 65620938 65620938 C T SNX32 3'UTR 0.75 TCGA-C5-A8YQ-01 11 7981421 7981421 G C NLRP10 Missense_Mutation p.Q580E 0.36 tolerated(0.06) benign(0.017) TCGA-C5-A8YQ-01 12 107103195 107103195 C A RFX4 Missense_Mutation p.N316K 0.22 tolerated(0.38) benign(0.369) TCGA-C5-A8YQ-01 12 109939243 109939243 A G UBE3B Missense_Mutation p.I396V 0.35 tolerated(0.55) benign(0.001) TCGA-C5-A8YQ-01 12 117191858 117191858 C T RNFT2 Missense_Mutation p.S207L 0.28 tolerated(0.06) benign(0.108) TCGA-C5-A8YQ-01 12 123468605 123468605 C T PITPNM2 3'UTR 0.22 TCGA-C5-A8YQ-01 12 12871209 12871209 G A CDKN1B Missense_Mutation p.E146K 0.72 deleterious(0.02) benign(0.427) TCGA-C5-A8YQ-01 12 44199799 44199799 G C TWF1 Intron 0.27 TCGA-C5-A8YQ-01 12 52564580 52564580 A T KRT80 3'UTR 0.46 TCGA-C5-A8YQ-01 12 54893148 54893148 G C NCKAP1L Missense_Mutation p.D38H 0.18 deleterious(0.01) benign(0.156) TCGA-C5-A8YQ-01 12 78452860 78452860 G A NAV3 Silent p.Q867Q 0.29 TCGA-C5-A8YQ-01 12 80981977 80981977 G C PTPRQ Missense_Mutation p.R1448T 0.24 tolerated(0.63) benign(0.013) TCGA-C5-A8YQ-01 13 20039640 20039640 G C TPTE2 Missense_Mutation p.Q193E 0.65 tolerated(0.18) benign(0.074) TCGA-C5-A8YQ-01 13 32757147 32757147 A G FRY Silent p.K1010K 0.25 TCGA-C5-A8YQ-01 13 33679807 33679807 G C STARD13 Missense_Mutation p.L1089V 0.50 deleterious(0.02) benign(0.399) TCGA-C5-A8YQ-01 13 36748967 36748967 G T SOHLH2 Silent p.L304L 0.36 TCGA-C5-A8YQ-01 13 50275291 50275291 C G KPNA3 3'UTR 0.33 TCGA-C5-A8YQ-01 14 101347682 101347682 C G RTL1 Missense_Mutation p.Q1148H 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-C5-A8YQ-01 14 103196130 103196130 C T RCOR1 3'UTR 0.75 TCGA-C5-A8YQ-01 14 23447598 23447598 G - AJUBA Frame_Shift_Del p.L355Wfs*55 0.46 TCGA-C5-A8YQ-01 14 60474908 60474908 G C LRRC9 Silent p.L1054L 0.70 TCGA-C5-A8YQ-01 14 66209820 66209820 G C FUT8 3'UTR 0.18 TCGA-C5-A8YQ-01 14 73739448 73739448 C T PAPLN 3'UTR 0.37 TCGA-C5-A8YQ-01 14 78140156 78140156 C T ALKBH1 Silent p.%3D 0.36 TCGA-C5-A8YQ-01 15 25925027 25925027 G A ATP10A Missense_Mutation p.P1321S 0.43 tolerated(0.47) benign(0.004) TCGA-C5-A8YQ-01 15 65620574 65620574 C T IGDCC3 3'UTR 0.50 TCGA-C5-A8YQ-01 15 65688125 65688125 C A IGDCC4 Missense_Mutation p.Q458H 0.87 deleterious(0.03) probably_damaging(0.981) TCGA-C5-A8YQ-01 15 89416190 89416190 G A ACAN Missense_Mutation p.E2423K 0.47 deleterious(0) probably_damaging(0.995) TCGA-C5-A8YQ-01 16 1448863 1448863 C T UNKL Intron 0.21 TCGA-C5-A8YQ-01 16 1545357 1545357 C T TELO2 Missense_Mutation p.R116W 0.60 deleterious(0.01) probably_damaging(0.918) TCGA-C5-A8YQ-01 16 20855350 20855350 T A AC004381.6 Splice_Site p.X573_splice 0.56 TCGA-C5-A8YQ-01 16 21033408 21033408 G A DNAH3 Silent p.F1887F 0.45 TCGA-C5-A8YQ-01 16 23721852 23721852 G A ERN2 Missense_Mutation p.P121L 0.26 deleterious(0) probably_damaging(0.957) TCGA-C5-A8YQ-01 16 28880585 28880585 C G SH2B1 Nonsense_Mutation p.S397* 0.23 TCGA-C5-A8YQ-01 16 28880647 28880647 C G SH2B1 Missense_Mutation p.L418V 0.23 deleterious(0.05) benign(0.006) TCGA-C5-A8YQ-01 16 3254569 3254569 T C OR1F1 Missense_Mutation p.V108A 0.29 tolerated(1) benign(0.002) TCGA-C5-A8YQ-01 16 48394582 48394582 A T SIAH1 3'UTR 0.27 TCGA-C5-A8YQ-01 16 67645962 67645962 A T CTCF Missense_Mutation p.H297L 0.55 deleterious(0) probably_damaging(0.998) TCGA-C5-A8YQ-01 16 71901807 71901807 G C ZNF821 Intron 0.50 TCGA-C5-A8YQ-01 16 81077588 81077588 C A ATMIN Silent p.T495T 0.20 TCGA-C5-A8YQ-01 17 17700973 17700973 G A RAI1 Missense_Mutation p.A1571T 0.70 tolerated(0.23) benign(0.21) TCGA-C5-A8YQ-01 17 26961628 26961628 C G KIAA0100 Missense_Mutation p.E993Q 0.28 deleterious(0.04) benign(0.027) TCGA-C5-A8YQ-01 17 38319961 38319961 G A CASC3 Missense_Mutation p.R338Q 0.50 tolerated_low_confidence(0.12) benign(0.131) TCGA-C5-A8YQ-01 17 39791631 39791631 G C KRT42P RNA 0.52 TCGA-C5-A8YQ-01 17 39974504 39974504 G A FKBP10 Silent p.L185L 0.25 TCGA-C5-A8YQ-01 17 40021101 40021101 C T KLHL11 Missense_Mutation p.E175K 0.32 deleterious(0.03) benign(0.141) TCGA-C5-A8YQ-01 17 48539611 48539611 C T ACSF2 Nonsense_Mutation p.Q192* 0.31 TCGA-C5-A8YQ-01 17 72285782 72285782 G A DNAI2 Missense_Mutation p.D173N 0.18 tolerated(0.05) benign(0.048) TCGA-C5-A8YQ-01 17 73914054 73914054 C T FBF1 Missense_Mutation p.E767K 0.67 deleterious(0.02) possibly_damaging(0.52) TCGA-C5-A8YQ-01 17 74712702 74712702 G T JMJD6 3'UTR 0.65 TCGA-C5-A8YQ-01 17 7579844 7579844 C T TP53 Nonsense_Mutation p.W23* 0.62 TCGA-C5-A8YQ-01 17 7640489 7640489 C T DNAH2 Silent p.L361L 0.80 TCGA-C5-A8YQ-01 17 79632439 79632439 G A OXLD1 Missense_Mutation p.S79L 0.25 deleterious(0.01) possibly_damaging(0.83) TCGA-C5-A8YQ-01 17 79805199 79805199 C G P4HB Missense_Mutation p.E217Q 0.23 deleterious(0.03) benign(0.066) TCGA-C5-A8YQ-01 18 29046683 29046687 GTTGC A DSG3 Frame_Shift_Del p.A537Yfs*45 0.45 TCGA-C5-A8YQ-01 18 39573285 39573285 C A PIK3C3 Missense_Mutation p.P256T 0.12 tolerated(0.26) probably_damaging(0.951) TCGA-C5-A8YQ-01 18 42531700 42531700 T A SETBP1 Missense_Mutation p.F799I 0.23 deleterious(0.03) probably_damaging(0.993) TCGA-C5-A8YQ-01 19 18054411 18054411 G C CCDC124 Missense_Mutation p.E187Q 0.38 deleterious(0.02) probably_damaging(0.951) TCGA-C5-A8YQ-01 19 35434931 35434931 G C ZNF30 Missense_Mutation p.R355T 0.41 tolerated(0.43) probably_damaging(0.978) TCGA-C5-A8YQ-01 19 37064279 37064279 G C ZNF529 5'Flank 0.36 TCGA-C5-A8YQ-01 19 39098808 39098808 G A MAP4K1 Missense_Mutation p.R337W 0.43 deleterious(0.03) benign(0.003) TCGA-C5-A8YQ-01 19 44129368 44129368 A T CADM4 Missense_Mutation p.S264T 0.42 tolerated(0.21) benign(0.015) TCGA-C5-A8YQ-01 19 47111774 47111774 A T CALM3 Missense_Mutation p.M72L 0.29 tolerated_low_confidence(0.66) benign(0.01) TCGA-C5-A8YQ-01 19 50028816 50028816 G A FCGRT Missense_Mutation p.R325K 0.38 tolerated(0.19) benign(0.01) TCGA-C5-A8YQ-01 19 51274784 51274784 C T GPR32 Silent p.S309S 0.07 TCGA-C5-A8YQ-01 19 549776 549776 C T GZMM Silent p.T253T 0.06 TCGA-C5-A8YQ-01 19 56572946 56572946 G A NLRP5 3'UTR 0.45 TCGA-C5-A8YQ-01 19 9435401 9435401 G A ZNF559 5'UTR 0.13 TCGA-C5-A8YQ-01 1 109837736 109837736 T G MYBPHL Missense_Mutation p.K351Q 0.29 deleterious(0.02) benign(0.339) TCGA-C5-A8YQ-01 1 110029163 110029163 G A ATXN7L2 Missense_Mutation p.D77N 0.50 deleterious(0.04) benign(0.067) TCGA-C5-A8YQ-01 1 118535259 118535259 C A SPAG17 Nonsense_Mutation p.G1731* 0.24 TCGA-C5-A8YQ-01 1 165738005 165738005 T C TMCO1 Missense_Mutation p.Q46R 0.21 deleterious_low_confidence(0.01) benign(0.151) TCGA-C5-A8YQ-01 1 172413190 172413190 G A PIGC 5'UTR 0.50 TCGA-C5-A8YQ-01 1 174945289 174945289 G C RABGAP1L Missense_Mutation p.E180D 0.15 tolerated(0.09) benign(0.019) TCGA-C5-A8YQ-01 1 178846721 178846721 G A RALGPS2 Missense_Mutation p.M232I 0.23 deleterious(0.02) possibly_damaging(0.543) TCGA-C5-A8YQ-01 1 183908167 183908167 C T COLGALT2 Missense_Mutation p.E537K 0.20 tolerated(0.35) benign(0.005) TCGA-C5-A8YQ-01 1 185266563 185266563 C G IVNS1ABP 3'UTR 0.27 TCGA-C5-A8YQ-01 1 206579793 206579793 G A SRGAP2 Missense_Mutation p.D320N 0.17 deleterious(0) probably_damaging(0.997) TCGA-C5-A8YQ-01 1 20675708 20675708 C G VWA5B1 Intron 0.15 TCGA-C5-A8YQ-01 1 224563609 224563609 G C CNIH4 3'UTR 0.23 TCGA-C5-A8YQ-01 1 226413404 226413404 C G MIXL1 Missense_Mutation p.S197C 0.28 tolerated(0.14) benign(0.008) TCGA-C5-A8YQ-01 1 226496816 226496816 C T LIN9 Missense_Mutation p.D25N 0.31 deleterious_low_confidence(0.01) benign(0.411) TCGA-C5-A8YQ-01 1 227239662 227239662 C T CDC42BPA Intron 0.23 TCGA-C5-A8YQ-01 1 234742939 234742939 C T IRF2BP2 Missense_Mutation p.E570K 0.19 deleterious(0) possibly_damaging(0.899) TCGA-C5-A8YQ-01 1 240969538 240969538 G A RGS7 Missense_Mutation p.P391S 0.13 tolerated(0.06) benign(0.038) TCGA-C5-A8YQ-01 1 244217304 244217304 C T ZBTB18 Silent p.S76S 0.27 TCGA-C5-A8YQ-01 1 24469612 24469612 C A IL22RA1 5'Flank 0.53 TCGA-C5-A8YQ-01 1 245865956 245865956 G C KIF26B 3'UTR 0.18 TCGA-C5-A8YQ-01 1 44083163 44083163 G T PTPRF Missense_Mutation p.E1373D 0.28 deleterious(0.05) benign(0.003) TCGA-C5-A8YQ-01 1 7993222 7993222 G A TNFRSF9 Missense_Mutation p.P227S 0.54 deleterious(0.04) benign(0.439) TCGA-C5-A8YQ-01 20 10277658 10277658 G A SNAP25 Missense_Mutation p.E123K 0.18 tolerated(0.59) possibly_damaging(0.782) TCGA-C5-A8YQ-01 20 24944400 24944400 G A APMAP 3'UTR 0.44 TCGA-C5-A8YQ-01 20 52601912 52601912 C T BCAS1 Missense_Mutation p.V352M 0.51 deleterious(0.01) benign(0.191) TCGA-C5-A8YQ-01 20 54573032 54573032 G A CBLN4 3'UTR 0.33 TCGA-C5-A8YQ-01 21 34123511 34123511 G A PAXBP1 Missense_Mutation p.P509L 0.39 deleterious(0.01) possibly_damaging(0.899) TCGA-C5-A8YQ-01 21 38887105 38887105 G A DYRK1A 3'Flank 0.33 TCGA-C5-A8YQ-01 22 29682981 29682981 G A EWSR1 Silent p.P223P 0.33 TCGA-C5-A8YQ-01 22 41573011 41573011 C T EP300 Nonsense_Mutation p.Q1766* 0.20 TCGA-C5-A8YQ-01 22 46709854 46709854 C T GTSE1 Missense_Mutation p.S332L 0.10 tolerated(0.06) benign(0.042) TCGA-C5-A8YQ-01 2 128364834 128364834 G A MYO7B Silent p.A826A 0.29 TCGA-C5-A8YQ-01 2 141777546 141777546 G C LRP1B Missense_Mutation p.L639V 0.47 possibly_damaging(0.694) TCGA-C5-A8YQ-01 2 144765000 144765000 C G GTDC1 Missense_Mutation p.Q208H 0.17 tolerated_low_confidence(0.39) benign(0.261) TCGA-C5-A8YQ-01 2 166535541 166535541 G A CSRNP3 Missense_Mutation p.E346K 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-C5-A8YQ-01 2 1668754 1668754 G A PXDN Missense_Mutation p.P462S 0.11 deleterious(0) probably_damaging(1) TCGA-C5-A8YQ-01 2 167269082 167269082 C T SCN7A Silent p.L1188L 0.21 TCGA-C5-A8YQ-01 2 168103146 168103146 C T XIRP2 Silent p.T1748T 0.29 TCGA-C5-A8YQ-01 2 179485937 179485937 C T TTN Missense_Mutation p.D15170N 0.18 TCGA-C5-A8YQ-01 2 197596781 197596781 C T CCDC150 Missense_Mutation p.H1032Y 0.29 deleterious(0) possibly_damaging(0.552) TCGA-C5-A8YQ-01 2 201473981 201473981 C A AOX1 Intron 0.63 TCGA-C5-A8YQ-01 2 20401229 20401229 G C SDC1 3'UTR 0.72 TCGA-C5-A8YQ-01 2 212240600 212240600 G C ERBB4 3'UTR 0.31 TCGA-C5-A8YQ-01 2 21231706 21231706 C T APOB Silent p.Q2678Q 0.16 TCGA-C5-A8YQ-01 2 212483950 212483950 C G ERBB4 Missense_Mutation p.K751N 0.17 deleterious(0) probably_damaging(0.999) TCGA-C5-A8YQ-01 2 219268000 219268000 C T CTDSP1 Missense_Mutation p.R173W 0.33 deleterious(0) probably_damaging(0.977) TCGA-C5-A8YQ-01 2 233433839 233433839 G A EIF4E2 3'UTR 0.35 TCGA-C5-A8YQ-01 2 240985212 240985212 G C OR6B3 Missense_Mutation p.S93C 0.31 deleterious(0) probably_damaging(0.992) TCGA-C5-A8YQ-01 2 25180812 25180812 C T DNAJC27 Missense_Mutation p.G91D 0.13 deleterious(0) probably_damaging(0.991) TCGA-C5-A8YQ-01 2 27322608 27322608 G A KHK Missense_Mutation p.G296D 0.06 deleterious(0.03) benign(0.079) TCGA-C5-A8YQ-01 2 27355178 27355178 G C PREB Silent p.L282L 0.31 TCGA-C5-A8YQ-01 2 29006820 29006820 A - PPP1CB Frame_Shift_Del p.R190Dfs*41 0.13 TCGA-C5-A8YQ-01 2 31589774 31589774 C T XDH Missense_Mutation p.E762K 0.18 tolerated(0.09) probably_damaging(1) TCGA-C5-A8YQ-01 2 39477612 39477612 A T MAP4K3 3'UTR 0.31 TCGA-C5-A8YQ-01 2 64169632 64169632 G A VPS54 Silent p.F455F 0.04 TCGA-C5-A8YQ-01 2 89160407 89160407 C T IGKJ4 Missense_Mutation p.E10K 0.30 benign(0.294) TCGA-C5-A8YQ-01 2 95542542 95542542 C A TEKT4 3'UTR 0.43 TCGA-C5-A8YQ-01 3 100988406 100988406 T C IMPG2 Silent p.A280A 0.82 TCGA-C5-A8YQ-01 3 130463540 130463540 G T PIK3R4 Missense_Mutation p.L175I 0.28 deleterious(0.02) benign(0.367) TCGA-C5-A8YQ-01 3 13612389 13612389 C T FBLN2 Silent p.H178H 0.41 TCGA-C5-A8YQ-01 3 164735615 164735615 T C SI Silent p.G1189G 0.32 TCGA-C5-A8YQ-01 3 16646092 16646092 C G DAZL 5'UTR 0.31 TCGA-C5-A8YQ-01 3 176740524 176740524 G A TBL1XR1 3'UTR 0.12 TCGA-C5-A8YQ-01 3 183400721 183400721 T C KLHL24 3'UTR 0.26 TCGA-C5-A8YQ-01 3 38938441 38938441 G A SCN11A Silent p.C766C 0.49 TCGA-C5-A8YQ-01 3 44611826 44611826 G A ZKSCAN7 Silent p.E408E 0.32 TCGA-C5-A8YQ-01 3 99567119 99567119 C T FILIP1L Intron 0.93 TCGA-C5-A8YQ-01 4 100496050 100496050 G C MTTP 5'UTR 0.30 TCGA-C5-A8YQ-01 4 101109089 101109089 G A DDIT4L Silent p.H109H 0.19 TCGA-C5-A8YQ-01 4 10444988 10444988 G A ZNF518B Missense_Mutation p.H989Y 0.42 deleterious(0.03) benign(0.018) TCGA-C5-A8YQ-01 4 110685824 110685824 C A CFI Missense_Mutation p.K117N 0.18 tolerated(0.53) benign(0.012) TCGA-C5-A8YQ-01 4 151388888 151388888 G T LRBA Silent p.I2250I 0.23 TCGA-C5-A8YQ-01 4 154525376 154525376 C T KIAA0922 Missense_Mutation p.S1071F 0.36 deleterious(0) probably_damaging(0.967) TCGA-C5-A8YQ-01 4 177138128 177138128 T A ASB5 Missense_Mutation p.T235S 0.14 tolerated(1) benign(0.052) TCGA-C5-A8YQ-01 4 189012789 189012789 G T TRIML2 Missense_Mutation p.T301N 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-C5-A8YQ-01 4 41635655 41635655 G T LIMCH1 Intron 0.31 TCGA-C5-A8YQ-01 4 41957235 41957235 G A TMEM33 3'UTR 0.24 TCGA-C5-A8YQ-01 4 499515 499515 G A PIGG Missense_Mutation p.M123I 0.24 tolerated(0.05) benign(0.213) TCGA-C5-A8YQ-01 4 69403561 69403561 C T UGT2B17 Missense_Mutation p.D459N 0.24 deleterious(0.01) probably_damaging(0.94) TCGA-C5-A8YQ-01 4 72436927 72436927 G C SLC4A4 3'UTR 0.52 TCGA-C5-A8YQ-01 5 118542552 118542552 C T DMXL1 Intron 0.60 TCGA-C5-A8YQ-01 5 122911448 122911448 C T CSNK1G3 Missense_Mutation p.S155L 0.27 deleterious(0.03) benign(0.06) TCGA-C5-A8YQ-01 5 128363022 128363022 C T SLC27A6 Silent p.F484F 0.32 TCGA-C5-A8YQ-01 5 133984637 133984638 - C SEC24A 5'UTR 0.59 TCGA-C5-A8YQ-01 5 140188498 140188498 G A PCDHA4 Missense_Mutation p.A576T 0.50 tolerated_low_confidence(0.15) benign(0.006) TCGA-C5-A8YQ-01 5 140755211 140755211 G A PCDHGA6 Missense_Mutation p.D521N 0.37 deleterious_low_confidence(0) possibly_damaging(0.751) TCGA-C5-A8YQ-01 5 140773721 140773721 C A PCDHGA8 Missense_Mutation p.D447E 0.29 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-C5-A8YQ-01 5 140782985 140782985 G A PCDHGA9 Missense_Mutation p.E156K 0.29 tolerated_low_confidence(0.15) benign(0.064) TCGA-C5-A8YQ-01 5 141336570 141336570 G A PCDH12 Missense_Mutation p.L283F 0.29 tolerated(0.39) benign(0.09) TCGA-C5-A8YQ-01 5 151183606 151183606 A T G3BP1 Missense_Mutation p.Q452L 0.06 deleterious_low_confidence(0.02) benign(0.035) TCGA-C5-A8YQ-01 5 170162938 170162938 G C KCNIP1 3'Flank 0.38 TCGA-C5-A8YQ-01 5 170162953 170162953 G C KCNIP1 3'Flank 0.33 TCGA-C5-A8YQ-01 5 176524578 176524578 C T FGFR4 Silent p.D770D 0.52 TCGA-C5-A8YQ-01 5 26881162 26881162 C T CDH9 3'UTR 0.26 TCGA-C5-A8YQ-01 5 37198898 37198898 C T C5orf42 Missense_Mutation p.R1193H 0.22 deleterious(0) probably_damaging(0.999) TCGA-C5-A8YQ-01 5 5209318 5209318 T G ADAMTS16 Missense_Mutation p.F522V 0.18 deleterious(0) probably_damaging(0.967) TCGA-C5-A8YQ-01 5 73072477 73072477 A G ARHGEF28 Missense_Mutation p.K266E 0.06 tolerated(0.17) benign(0.029) TCGA-C5-A8YQ-01 5 76129430 76129430 C G F2RL1 Missense_Mutation p.S333C 0.29 deleterious(0.03) benign(0.143) TCGA-C5-A8YQ-01 6 123122527 123122527 G C SMPDL3A Missense_Mutation p.E182Q 0.66 deleterious(0.02) probably_damaging(0.925) TCGA-C5-A8YQ-01 6 13638082 13638082 C T RANBP9 Missense_Mutation p.S544N 0.40 tolerated(0.11) benign(0.016) TCGA-C5-A8YQ-01 6 154489139 154489139 C G IPCEF1 Missense_Mutation p.L340F 0.37 tolerated(0.63) possibly_damaging(0.686) TCGA-C5-A8YQ-01 6 24653363 24653363 C G TDP2 Missense_Mutation p.E219Q 0.40 tolerated(0.05) benign(0.403) TCGA-C5-A8YQ-01 6 27775268 27775268 G A HIST1H2BL 3'UTR 0.39 TCGA-C5-A8YQ-01 6 31138017 31138017 C G POU5F1 Missense_Mutation p.E127D 0.53 tolerated(0.06) possibly_damaging(0.899) TCGA-C5-A8YQ-01 6 35842042 35842042 G C SRPK1 Missense_Mutation p.P185A 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-C5-A8YQ-01 6 4060956 4060956 G C PRPF4B 3'UTR 0.50 TCGA-C5-A8YQ-01 6 43147293 43147293 C T SRF 3'UTR 0.41 TCGA-C5-A8YQ-01 6 70447854 70447854 A G LMBRD1 Silent p.L206L 0.39 TCGA-C5-A8YQ-01 7 100465727 100465727 C T TRIP6 Intron 0.27 TCGA-C5-A8YQ-01 7 107849896 107849896 G A NRCAM Silent p.A348A 0.31 TCGA-C5-A8YQ-01 7 110764104 110764104 G A LRRN3 Missense_Mutation p.E426K 0.47 tolerated(0.52) possibly_damaging(0.527) TCGA-C5-A8YQ-01 7 150749676 150749676 C T ASIC3 Missense_Mutation p.P518L 0.11 tolerated_low_confidence(0.11) probably_damaging(0.958) TCGA-C5-A8YQ-01 7 22161821 22161821 G A RAPGEF5 3'UTR 0.21 TCGA-C5-A8YQ-01 7 23509569 23509569 A G IGF2BP3 Missense_Mutation p.I54T 0.40 deleterious(0) probably_damaging(0.955) TCGA-C5-A8YQ-01 7 28997844 28997844 C T AC005013.5 Intron 0.41 TCGA-C5-A8YQ-01 7 35919452 35919452 G C SEPT7 Missense_Mutation p.E179Q 0.36 deleterious(0.03) possibly_damaging(0.84) TCGA-C5-A8YQ-01 7 5567507 5567507 C T ACTB Missense_Mutation p.E334K 0.46 deleterious_low_confidence(0.03) benign(0.004) TCGA-C5-A8YQ-01 7 56066859 56066859 G A GBAS 3'UTR 0.12 TCGA-C5-A8YQ-01 7 82584619 82584619 A G PCLO Missense_Mutation p.Y1884H 0.21 unknown(0) TCGA-C5-A8YQ-01 7 86274000 86274000 C T GRM3 5'UTR 0.24 TCGA-C5-A8YQ-01 7 90896671 90896671 G A FZD1 3'UTR 0.12 TCGA-C5-A8YQ-01 7 92760745 92760745 T C SAMD9L Missense_Mutation p.K1514E 0.08 tolerated(0.15) benign(0.045) TCGA-C5-A8YQ-01 7 98963824 98963824 G C ARPC1A 3'UTR 0.33 TCGA-C5-A8YQ-01 8 100205165 100205165 C T VPS13B Nonsense_Mutation p.Q799* 0.22 TCGA-C5-A8YQ-01 8 101717814 101717814 C T PABPC1 Intron 0.20 TCGA-C5-A8YQ-01 8 104427646 104427646 C G DCAF13 Missense_Mutation p.S143W 0.13 deleterious_low_confidence(0) benign(0) TCGA-C5-A8YQ-01 8 117875445 117875445 G A RAD21 Silent p.I66I 0.14 TCGA-C5-A8YQ-01 8 133041426 133041426 C G OC90 Missense_Mutation p.R344S 0.13 tolerated(0.13) probably_damaging(0.947) TCGA-C5-A8YQ-01 8 134239730 134239730 G A WISP1 Missense_Mutation p.R294H 0.26 deleterious(0.04) benign(0.082) TCGA-C5-A8YQ-01 8 144642908 144642908 C T GSDMD Silent p.G182G 0.20 TCGA-C5-A8YQ-01 8 1497609 1497609 G A DLGAP2 Silent p.A250A 0.23 TCGA-C5-A8YQ-01 8 22058675 22058675 C G BMP1 Intron 0.14 TCGA-C5-A8YQ-01 8 22477168 22477168 G A CCAR2 Silent p.E915E 0.56 TCGA-C5-A8YQ-01 8 23700609 23700609 C G STC1 3'UTR 0.14 TCGA-C5-A8YQ-01 8 30706767 30706767 C A TEX15 5'Flank 0.24 TCGA-C5-A8YQ-01 8 38251623 38251623 G C LETM2 Missense_Mutation p.R123T 0.26 deleterious(0.01) probably_damaging(0.954) TCGA-C5-A8YQ-01 8 41790970 41790970 C T KAT6A Missense_Mutation p.G1590S 0.53 unknown(0) TCGA-C5-A8YQ-01 8 66636578 66636578 C G PDE7A Missense_Mutation p.L358F 0.11 deleterious(0) probably_damaging(1) TCGA-C5-A8YQ-01 8 86042233 86042233 G A LRRCC1 Missense_Mutation p.R569Q 0.23 tolerated(1) benign(0) TCGA-C5-A8YQ-01 9 111631273 111631273 G A IKBKAP 3'UTR 0.25 TCGA-C5-A8YQ-01 9 130869628 130869628 C T SLC25A25 Silent p.L473L 0.79 TCGA-C5-A8YQ-01 9 139400155 139400155 T C NOTCH1 Missense_Mutation p.Y1398C 0.72 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A8YQ-01 9 21968242 21968242 C T CDKN2A Splice_Site 0.78 TCGA-C5-A8YQ-01 9 37733824 37733824 T C FRMPD1 Splice_Site p.X406_splice 0.77 TCGA-C5-A8YQ-01 9 77692108 77692108 C G NMRK1 Missense_Mutation p.E46Q 0.37 tolerated(0.13) benign(0.013) TCGA-C5-A8YQ-01 9 84564191 84564191 C A RP11-383M4.6 Intron 0.87 TCGA-C5-A8YQ-01 X 105201388 105201388 C A NRK 3'UTR 0.27 TCGA-C5-A8YQ-01 X 114239849 114239849 G A IL13RA2 Missense_Mutation p.R343C 0.27 tolerated(0.17) benign(0.003) TCGA-C5-A8YQ-01 X 117162394 117162394 G A KLHL13 Missense_Mutation p.R15C 0.25 deleterious_low_confidence(0.01) benign(0) TCGA-C5-A8YQ-01 X 127185183 127185183 C T ACTRT1 Missense_Mutation p.D335N 0.31 tolerated(0.07) benign(0.078) TCGA-C5-A8YQ-01 X 144907312 144907312 C A SLITRK2 3'UTR 0.16 TCGA-C5-A8YQ-01 X 14599433 14599433 C G GLRA2 Missense_Mutation p.F133L 0.37 deleterious(0) probably_damaging(0.956) TCGA-C5-A8YQ-01 X 148615649 148615649 G C IDS 5'Flank 0.33 TCGA-C5-A8YQ-01 X 152482380 152482380 C T MAGEA1 Missense_Mutation p.E211K 0.18 deleterious(0.01) probably_damaging(1) TCGA-C5-A8YQ-01 X 153197525 153197525 G C NAA10 Missense_Mutation p.Q129E 0.21 tolerated(0.51) benign(0.005) TCGA-C5-A8YQ-01 X 153279511 153279511 C T IRAK1 Silent p.R507R 0.29 TCGA-C5-A8YQ-01 X 17753556 17753556 G A NHS 3'UTR 0.21 TCGA-C5-A8YQ-01 X 27997690 27997690 C G DCAF8L1 Missense_Mutation p.E588Q 0.33 deleterious(0.03) possibly_damaging(0.81) TCGA-C5-A8YQ-01 X 35985748 35985748 C G CXorf22 Missense_Mutation p.S538W 0.39 deleterious(0.01) possibly_damaging(0.723) TCGA-C5-A8YQ-01 X 48631801 48631801 C T GLOD5 Nonsense_Mutation p.R145* 0.34 TCGA-C5-A8YQ-01 X 54276448 54276448 G C WNK3 Missense_Mutation p.P898A 0.27 deleterious(0.04) benign(0.002) TCGA-C5-A8YQ-01 X 55479319 55479319 C T MAGEH1 Missense_Mutation p.S171L 0.44 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-C5-A8YQ-01 X 69550093 69550093 C T KIF4A Missense_Mutation p.R328C 0.21 deleterious(0) probably_damaging(0.956) TCGA-C5-A8YQ-01 X 83128191 83128191 G A CYLC1 Missense_Mutation p.D159N 0.60 tolerated(0.23) benign(0.135) TCGA-C5-A8YQ-01 X 99551501 99551501 G C PCDH19 Missense_Mutation p.S1074C 0.20 deleterious_low_confidence(0.02) benign(0.287) TCGA-C5-A8YR-01 10 29843790 29843790 C A SVIL Nonsense_Mutation p.G28* 0.86 TCGA-C5-A8YR-01 10 50339791 50339791 A G FAM170B Missense_Mutation p.M240T 0.67 deleterious(0) probably_damaging(0.917) TCGA-C5-A8YR-01 10 93809523 93809523 G A CPEB3 3'UTR 0.70 TCGA-C5-A8YR-01 11 119142571 119142571 G C CBL Missense_Mutation p.W190C 0.76 deleterious(0) probably_damaging(1) TCGA-C5-A8YR-01 11 119243810 119243810 G A USP2 Silent p.I127I 0.80 TCGA-C5-A8YR-01 11 119535565 119535565 C T PVRL1 Silent p.G482G 0.63 TCGA-C5-A8YR-01 11 14287121 14287121 G A RP11-21L19.1 Intron 0.74 TCGA-C5-A8YR-01 11 5842199 5842199 G C OR52N2 Missense_Mutation p.D212H 0.38 deleterious(0) probably_damaging(0.995) TCGA-C5-A8YR-01 11 60535130 60535130 T C MS4A15 Splice_Site p.X116_splice 0.08 TCGA-C5-A8YR-01 11 63991615 63991615 G C TRPT1 Silent p.L211L 0.68 TCGA-C5-A8YR-01 12 105558013 105558013 G A KIAA1033 Silent p.Q1094Q 0.06 TCGA-C5-A8YR-01 12 111923066 111923066 C T ATXN2 Intron 0.30 TCGA-C5-A8YR-01 12 11461505 11461505 G C PRB4 Missense_Mutation p.P138A 0.19 deleterious_low_confidence(0.04) unknown(0) TCGA-C5-A8YR-01 12 14943560 14943560 G C WBP11 Missense_Mutation p.S380C 0.49 tolerated_low_confidence(0.09) unknown(0) TCGA-C5-A8YR-01 12 26217994 26217994 G C RASSF8 Missense_Mutation p.E223Q 0.57 deleterious(0.02) possibly_damaging(0.558) TCGA-C5-A8YR-01 12 49168554 49168554 G A ADCY6 Silent p.L696L 0.59 TCGA-C5-A8YR-01 12 50749830 50749830 G C FAM186A Nonsense_Mutation p.S262* 0.49 TCGA-C5-A8YR-01 12 50821675 50821675 C T LARP4 Missense_Mutation p.S50L 0.32 tolerated(0.1) benign(0.009) TCGA-C5-A8YR-01 12 57993201 57993201 G A PIP4K2C Missense_Mutation p.E227K 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-C5-A8YR-01 12 58089584 58089584 G C OS9 Missense_Mutation p.E121Q 0.54 deleterious(0.04) possibly_damaging(0.717) TCGA-C5-A8YR-01 13 28537313 28537313 C T CDX2 Missense_Mutation p.G294D 0.31 deleterious(0.01) unknown(0) TCGA-C5-A8YR-01 13 28908175 28908175 C G FLT1 Silent p.V860V 0.70 TCGA-C5-A8YR-01 13 50590770 50590770 C T TRIM13 3'Flank 0.38 TCGA-C5-A8YR-01 13 50592522 50592522 C G KCNRG Intron 0.29 TCGA-C5-A8YR-01 13 88329033 88329033 C T SLITRK5 Silent p.L464L 0.43 TCGA-C5-A8YR-01 14 102463478 102463478 T A DYNC1H1 Missense_Mutation p.I1224N 0.89 probably_damaging(0.987) TCGA-C5-A8YR-01 14 102797977 102797977 G A ZNF839 Missense_Mutation p.V404I 0.78 tolerated(0.23) possibly_damaging(0.496) TCGA-C5-A8YR-01 14 23445918 23445918 C T AJUBA Missense_Mutation p.R371Q 0.67 deleterious(0) benign(0.033) TCGA-C5-A8YR-01 14 64688277 64688277 A G SYNE2 Intron 0.72 TCGA-C5-A8YR-01 14 93119276 93119276 C T RIN3 Silent p.L628L 0.60 TCGA-C5-A8YR-01 15 25200104 25200104 G A SNRPN Intron 0.20 TCGA-C5-A8YR-01 15 37385804 37385804 G A MEIS2 Missense_Mutation p.S206F 0.33 deleterious(0) possibly_damaging(0.726) TCGA-C5-A8YR-01 15 42740471 42740471 C G ZNF106 Missense_Mutation p.L955F 0.59 tolerated(0.57) benign(0.299) TCGA-C5-A8YR-01 15 44106766 44106766 C T MFAP1 Missense_Mutation p.E184K 0.15 tolerated(0.12) possibly_damaging(0.621) TCGA-C5-A8YR-01 15 64458742 64458742 C T CSNK1G1 3'UTR 0.58 TCGA-C5-A8YR-01 15 64967886 64967886 G A ZNF609 Missense_Mutation p.E945K 0.21 deleterious(0.01) possibly_damaging(0.886) TCGA-C5-A8YR-01 15 81593718 81593718 C A IL16 Silent p.L1061L 0.29 TCGA-C5-A8YR-01 15 85112952 85112952 C T UBE2Q2P1 RNA 0.21 TCGA-C5-A8YR-01 16 2514567 2514567 G T C16orf59 Silent p.P400P 0.22 TCGA-C5-A8YR-01 16 28915797 28915797 C G RABEP2 3'UTR 0.36 TCGA-C5-A8YR-01 16 30681076 30681076 C T FBRS 3'UTR 0.25 TCGA-C5-A8YR-01 16 31422820 31422820 C G ITGAD Missense_Mutation p.I563M 0.39 deleterious(0.02) benign(0.157) TCGA-C5-A8YR-01 16 52473111 52473111 C T TOX3 3'UTR 0.44 TCGA-C5-A8YR-01 17 1543840 1543840 C G SCARF1 Missense_Mutation p.E304D 0.50 tolerated(0.18) benign(0.005) TCGA-C5-A8YR-01 17 1782880 1782880 G A RPA1 Missense_Mutation p.E327K 0.33 tolerated(0.19) benign(0.08) TCGA-C5-A8YR-01 17 19844222 19844222 G A AKAP10 Missense_Mutation p.S388L 0.47 deleterious(0) benign(0.312) TCGA-C5-A8YR-01 17 28030071 28030071 C T SSH2 Silent p.E39E 0.53 TCGA-C5-A8YR-01 17 36667430 36667430 C T ARHGAP23 3'UTR 0.21 TCGA-C5-A8YR-01 17 39023090 39023090 C T KRT12 Missense_Mutation p.D117N 0.28 deleterious(0.03) unknown(0) TCGA-C5-A8YR-01 17 42155919 42155919 G A HDAC5 Missense_Mutation p.S1094L 0.40 deleterious(0) probably_damaging(0.975) TCGA-C5-A8YR-01 17 45885927 45885927 G A OSBPL7 Silent p.I799I 0.24 TCGA-C5-A8YR-01 17 48542677 48542677 C G CHAD Missense_Mutation p.K354N 0.63 deleterious(0.03) possibly_damaging(0.617) TCGA-C5-A8YR-01 17 56393446 56393446 G A BZRAP1 Missense_Mutation p.P679L 0.50 deleterious(0) probably_damaging(0.977) TCGA-C5-A8YR-01 17 57771387 57771387 C T CLTC 3'UTR 0.42 TCGA-C5-A8YR-01 17 57772485 57772485 C G CLTC 3'UTR 0.27 TCGA-C5-A8YR-01 17 70943895 70943895 C T SLC39A11 Silent p.R142R 0.28 TCGA-C5-A8YR-01 17 72938012 72938012 C T OTOP3 Silent p.F169F 0.15 TCGA-C5-A8YR-01 17 72938105 72938105 C T OTOP3 Silent p.V200V 0.21 TCGA-C5-A8YR-01 17 72938120 72938120 C T OTOP3 Silent p.F205F 0.15 TCGA-C5-A8YR-01 17 74731816 74731816 C G SRSF2 3'UTR 0.56 TCGA-C5-A8YR-01 17 74731833 74731833 C G SRSF2 3'UTR 0.65 TCGA-C5-A8YR-01 17 74733038 74733038 C T SRSF2 Missense_Mutation p.E69K 0.50 deleterious(0.05) possibly_damaging(0.876) TCGA-C5-A8YR-01 17 80136982 80136982 C T CCDC57 Missense_Mutation p.R432H 0.12 tolerated(0.08) benign(0.09) TCGA-C5-A8YR-01 19 10200581 10200581 C T C19orf66 Missense_Mutation p.A81V 0.14 deleterious(0.01) benign(0.364) TCGA-C5-A8YR-01 19 11129630 11129630 C T SMARCA4 Intron 0.80 TCGA-C5-A8YR-01 19 1220378 1220378 C T STK11 Silent p.F157F 0.82 TCGA-C5-A8YR-01 19 1220382 1220382 C T STK11 Nonsense_Mutation p.Q159* 0.79 TCGA-C5-A8YR-01 19 17487748 17487748 C T PLVAP Missense_Mutation p.R117H 0.30 deleterious(0.01) probably_damaging(0.965) TCGA-C5-A8YR-01 19 30935651 30935651 C G ZNF536 Silent p.V394V 0.38 TCGA-C5-A8YR-01 19 38697616 38697616 C T SIPA1L3 3'UTR 0.40 TCGA-C5-A8YR-01 19 39805300 39805300 G A LRFN1 Missense_Mutation p.P226L 0.38 deleterious(0) probably_damaging(1) TCGA-C5-A8YR-01 19 45883440 45883440 C G PPP1R13L 3'UTR 0.47 TCGA-C5-A8YR-01 19 47260587 47260587 A T FKRP 3'UTR 0.14 TCGA-C5-A8YR-01 19 56172526 56172526 G A U2AF2 Missense_Mutation p.V153M 0.34 deleterious(0.03) probably_damaging(0.968) TCGA-C5-A8YR-01 19 57868539 57868539 C G ZNF304 Silent p.L434L 0.42 TCGA-C5-A8YR-01 1 100732121 100732121 C T RTCA Silent p.L29L 0.91 TCGA-C5-A8YR-01 1 110740825 110740825 C G SLC6A17 Missense_Mutation p.S648C 0.33 deleterious(0.04) benign(0.111) TCGA-C5-A8YR-01 1 146410041 146410041 G A NBPF12 Missense_Mutation p.E633K 0.93 possibly_damaging(0.647) TCGA-C5-A8YR-01 1 156815817 156815817 G A INSRR Silent p.L635L 0.87 TCGA-C5-A8YR-01 1 16262645 16262645 C G SPEN Missense_Mutation p.Q3304E 0.40 possibly_damaging(0.684) TCGA-C5-A8YR-01 1 16722012 16722012 C T SZRD1 3'UTR 0.46 TCGA-C5-A8YR-01 1 193054022 193054022 G C TROVE2 3'UTR 0.88 TCGA-C5-A8YR-01 1 201252848 201252848 C G PKP1 Silent p.L6L 0.91 TCGA-C5-A8YR-01 1 202418171 202418171 C G PPP1R12B Silent p.V574V 0.80 TCGA-C5-A8YR-01 1 2336445 2336445 C T PEX10 3'UTR 0.33 TCGA-C5-A8YR-01 1 23759660 23759660 G C ASAP3 Missense_Mutation p.Q745E 0.92 tolerated(0.13) benign(0.044) TCGA-C5-A8YR-01 1 31764810 31764810 C T SNRNP40 Silent p.L105L 0.42 TCGA-C5-A8YR-01 1 32256755 32256755 G C SPOCD1 Missense_Mutation p.Q1034E 0.54 tolerated(0.07) benign(0.074) TCGA-C5-A8YR-01 1 32497157 32497157 A G KHDRBS1 Silent p.Q180Q 0.05 TCGA-C5-A8YR-01 1 46508808 46508808 G C PIK3R3 3'UTR 0.32 TCGA-C5-A8YR-01 1 46509319 46509319 G C PIK3R3 3'UTR 0.41 TCGA-C5-A8YR-01 1 53370756 53370756 G A ECHDC2 Missense_Mutation p.S155L 0.42 deleterious(0.01) possibly_damaging(0.636) TCGA-C5-A8YR-01 1 75622622 75622622 T G LHX8 Missense_Mutation p.S285R 0.43 deleterious(0.04) benign(0.416) TCGA-C5-A8YR-01 1 935114 935114 G C HES4 Silent p.L80L 0.38 TCGA-C5-A8YR-01 20 23016664 23016664 G T SSTR4 Missense_Mutation p.A182S 0.33 deleterious(0.01) possibly_damaging(0.46) TCGA-C5-A8YR-01 20 44050133 44050133 C T PIGT Missense_Mutation p.P382S 0.24 tolerated(0.22) possibly_damaging(0.705) TCGA-C5-A8YR-01 20 62648114 62648114 C T PRPF6 Silent p.T521T 0.42 TCGA-C5-A8YR-01 21 47851877 47851877 C G PCNT Silent p.L2833L 0.54 TCGA-C5-A8YR-01 22 20050871 20050871 G C TANGO2 Missense_Mutation p.D206H 0.25 deleterious(0) probably_damaging(1) TCGA-C5-A8YR-01 22 27019213 27019213 G C CRYBA4 Missense_Mutation p.E19Q 0.27 tolerated(1) benign(0.068) TCGA-C5-A8YR-01 22 30776302 30776302 G A RNF215 Missense_Mutation p.S278L 0.45 tolerated(0.09) benign(0.263) TCGA-C5-A8YR-01 22 30976087 30976087 G C PES1 Silent p.T374T 0.41 TCGA-C5-A8YR-01 22 50356980 50356980 C G PIM3 3'UTR 0.39 TCGA-C5-A8YR-01 2 120413990 120413990 G C PCDP1 Missense_Mutation p.E823Q 0.43 tolerated(0.13) possibly_damaging(0.58) TCGA-C5-A8YR-01 2 130832863 130832863 G A POTEF Missense_Mutation p.R728W 0.10 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-C5-A8YR-01 2 164467227 164467227 G C FIGN Nonsense_Mutation p.S372* 0.56 TCGA-C5-A8YR-01 2 171258164 171258164 C G MYO3B Missense_Mutation p.R698G 0.79 deleterious(0) possibly_damaging(0.865) TCGA-C5-A8YR-01 2 17889926 17889926 C G SMC6 Missense_Mutation p.E609Q 0.36 deleterious(0) probably_damaging(0.99) TCGA-C5-A8YR-01 2 202141586 202141586 C T CASP8 Missense_Mutation p.R292W 0.81 deleterious(0) probably_damaging(1) TCGA-C5-A8YR-01 2 215875139 215875139 C G ABCA12 Silent p.V796V 0.76 TCGA-C5-A8YR-01 2 242129563 242129563 G A ANO7 Missense_Mutation p.G83R 0.83 deleterious(0.03) benign(0.151) TCGA-C5-A8YR-01 2 32460510 32460510 C T NLRC4 Silent p.L914L 0.33 TCGA-C5-A8YR-01 2 32738128 32738128 C G BIRC6 Missense_Mutation p.S3492C 0.35 probably_damaging(0.997) TCGA-C5-A8YR-01 2 39008747 39008747 G A GEMIN6 Missense_Mutation p.E73K 0.58 deleterious(0.03) possibly_damaging(0.825) TCGA-C5-A8YR-01 2 39008866 39008866 G A GEMIN6 Silent p.K112K 0.56 TCGA-C5-A8YR-01 2 39008885 39008885 G A GEMIN6 Missense_Mutation p.E119K 0.56 deleterious(0.04) benign(0.2) TCGA-C5-A8YR-01 2 43797583 43797583 C T THADA Missense_Mutation p.E711K 0.36 tolerated(0.16) benign(0.347) TCGA-C5-A8YR-01 2 43993536 43993536 C G PLEKHH2 3'UTR 0.23 TCGA-C5-A8YR-01 2 5837438 5837438 G T SOX11 3'UTR 0.30 TCGA-C5-A8YR-01 2 61508307 61508307 G C USP34 Nonsense_Mutation p.S1690* 0.52 TCGA-C5-A8YR-01 2 61508328 61508328 G A USP34 Missense_Mutation p.S1683L 0.54 deleterious(0.04) benign(0.034) TCGA-C5-A8YR-01 2 69304537 69304537 C G ANTXR1 Intron 0.42 TCGA-C5-A8YR-01 2 73447228 73447228 G C SMYD5 Missense_Mutation p.Q85H 0.40 deleterious(0.03) possibly_damaging(0.696) TCGA-C5-A8YR-01 2 97368795 97368795 C G LMAN2L 3'Flank 0.48 TCGA-C5-A8YR-01 3 114012957 114012957 C T TIGIT Missense_Mutation p.P17S 0.21 tolerated(0.48) benign(0.012) TCGA-C5-A8YR-01 3 129158706 129158706 C T MBD4 5'UTR 0.59 TCGA-C5-A8YR-01 3 129279255 129279255 G A PLXND1 Missense_Mutation p.A1684V 0.26 tolerated(1) benign(0.009) TCGA-C5-A8YR-01 3 130107668 130107668 G A COL6A5 Missense_Mutation p.E703K 0.34 tolerated(0.37) benign(0.001) TCGA-C5-A8YR-01 3 138452260 138452260 G A PIK3CB Silent p.N331N 0.39 TCGA-C5-A8YR-01 3 154146499 154146499 G A GPR149 Silent p.F302F 0.25 TCGA-C5-A8YR-01 3 167246907 167246907 G A WDR49 Missense_Mutation p.T428I 0.47 tolerated(0.63) benign(0.003) TCGA-C5-A8YR-01 3 182788831 182788831 G T MCCC1 Missense_Mutation p.F239L 0.50 deleterious(0) possibly_damaging(0.896) TCGA-C5-A8YR-01 3 183638251 183638251 C T ABCC5 3'UTR 0.37 TCGA-C5-A8YR-01 3 196663996 196663997 GT - NCBP2 Intron 0.30 TCGA-C5-A8YR-01 3 196674064 196674064 G C PIGZ Silent p.L568L 0.26 TCGA-C5-A8YR-01 3 197351032 197351032 G C AC024560.3 RNA 0.57 TCGA-C5-A8YR-01 3 37059035 37059035 G A MLH1 Missense_Mutation p.E277K 0.31 deleterious(0.01) probably_damaging(0.936) TCGA-C5-A8YR-01 3 49094787 49094787 C G QRICH1 Missense_Mutation p.L282F 0.63 deleterious(0) probably_damaging(0.964) TCGA-C5-A8YR-01 3 52467630 52467630 C T SEMA3G 3'UTR 0.24 TCGA-C5-A8YR-01 3 9965627 9965627 G A IL17RC Missense_Mutation p.E300K 0.25 tolerated(0.11) benign(0.032) TCGA-C5-A8YR-01 4 152198322 152198322 G C PRSS48 5'Flank 0.62 TCGA-C5-A8YR-01 4 2734135 2734135 G C FAM193A 3'UTR 0.27 TCGA-C5-A8YR-01 4 48073665 48073665 C T TXK Missense_Mutation p.E462K 0.27 tolerated(0.1) probably_damaging(1) TCGA-C5-A8YR-01 4 6600064 6600064 C T MAN2B2 Missense_Mutation p.P463L 0.52 tolerated(0.07) benign(0.021) TCGA-C5-A8YR-01 4 79839619 79839623 ATATC - PAQR3 3'UTR 0.61 TCGA-C5-A8YR-01 4 8293165 8293165 C T HTRA3 Silent p.I259I 0.55 TCGA-C5-A8YR-01 5 108680431 108680431 C G PJA2 Missense_Mutation p.E618D 0.26 deleterious(0.01) benign(0.032) TCGA-C5-A8YR-01 5 126205507 126205507 C T MARCH3 3'UTR 0.43 TCGA-C5-A8YR-01 5 137087875 137087875 T A HNRNPA0 3'UTR 0.12 TCGA-C5-A8YR-01 5 140209877 140209877 C T PCDHA6 Missense_Mutation p.A734V 0.60 deleterious_low_confidence(0.01) benign(0.004) TCGA-C5-A8YR-01 5 140390673 140390673 T C PCDHAC1 3'UTR 0.16 TCGA-C5-A8YR-01 5 141041370 141041370 G A ARAP3 Intron 0.57 TCGA-C5-A8YR-01 5 149506119 149506119 G A PDGFRB Silent p.I546I 0.31 TCGA-C5-A8YR-01 5 159519564 159519564 G C PWWP2A Missense_Mutation p.S698C 0.19 deleterious(0) probably_damaging(0.999) TCGA-C5-A8YR-01 5 175815888 175815888 G C HIGD2A Missense_Mutation p.G23A 0.19 deleterious(0) probably_damaging(0.94) TCGA-C5-A8YR-01 5 66426104 66426104 G C MAST4 Missense_Mutation p.Q604H 0.51 probably_damaging(0.937) TCGA-C5-A8YR-01 5 68553939 68553939 C G CDK7 Missense_Mutation p.Q123E 0.59 tolerated(0.09) benign(0.272) TCGA-C5-A8YR-01 5 90669503 90669503 C T ARRDC3 Missense_Mutation p.E396K 0.30 deleterious(0) possibly_damaging(0.899) TCGA-C5-A8YR-01 6 105595235 105595235 C T BVES-AS1 RNA 0.45 TCGA-C5-A8YR-01 6 107824918 107824918 G T SOBP Nonsense_Mutation p.E52* 0.48 TCGA-C5-A8YR-01 6 110012562 110012562 G A FIG4 5'UTR 0.33 TCGA-C5-A8YR-01 6 117252879 117252879 C G RFX6 3'UTR 0.27 TCGA-C5-A8YR-01 6 149925858 149925858 C G KATNA1 Missense_Mutation p.D188H 0.27 deleterious(0) possibly_damaging(0.871) TCGA-C5-A8YR-01 6 160913831 160913831 C G LPAL2 RNA 0.35 TCGA-C5-A8YR-01 6 27834714 27834714 C T HIST1H1B Silent p.P198P 0.71 TCGA-C5-A8YR-01 6 32154038 32154038 G T PBX2 3'UTR 0.59 TCGA-C5-A8YR-01 6 33146103 33146103 T A COL11A2 Silent p.R514R 0.84 TCGA-C5-A8YR-01 6 36653540 36653540 C G CDKN1A Missense_Mutation p.S153C 0.62 deleterious(0) probably_damaging(0.998) TCGA-C5-A8YR-01 6 56357204 56357204 G A DST Missense_Mutation p.R4237C 0.55 probably_damaging(1) TCGA-C5-A8YR-01 6 65301457 65301457 C T EYS Missense_Mutation p.D1435N 0.40 tolerated_low_confidence(0.37) benign(0.086) TCGA-C5-A8YR-01 6 7373668 7373668 G A CAGE1 Silent p.L462L 0.50 TCGA-C5-A8YR-01 7 104654756 104654756 C G KMT2E 5'UTR 0.61 TCGA-C5-A8YR-01 7 117067497 117067497 C T ASZ1 Silent p.L6L 0.54 TCGA-C5-A8YR-01 7 151860400 151860400 C T KMT2C Missense_Mutation p.R3421K 0.19 probably_damaging(0.992) TCGA-C5-A8YR-01 7 1733218 1733218 C G AC074389.6 Missense_Mutation p.R105T 0.81 deleterious_low_confidence(0) benign(0.402) TCGA-C5-A8YR-01 7 86415687 86415687 C T GRM3 Silent p.P193P 0.56 TCGA-C5-A8YR-01 7 91774258 91774258 C G LRRD1 Missense_Mutation p.E843Q 0.29 tolerated(0.12) possibly_damaging(0.649) TCGA-C5-A8YR-01 7 98257765 98257765 A G NPTX2 Missense_Mutation p.S374G 0.37 deleterious(0.01) probably_damaging(0.93) TCGA-C5-A8YR-01 8 141572575 141572575 G A AGO2 Silent p.V165V 0.43 TCGA-C5-A8YR-01 8 144652667 144652667 C T MROH6 Missense_Mutation p.R294Q 0.31 tolerated(0.17) benign(0.027) TCGA-C5-A8YR-01 8 144808812 144808812 G A FAM83H Missense_Mutation p.T940I 0.30 tolerated(0.06) benign(0.009) TCGA-C5-A8YR-01 8 30553948 30553948 C G GSR Silent p.G248G 0.32 TCGA-C5-A8YR-01 8 67428467 67428467 G A C8orf46 3'UTR 0.27 TCGA-C5-A8YR-01 8 79629711 79629711 C T ZC2HC1A Nonsense_Mutation p.R321* 0.46 TCGA-C5-A8YR-01 9 103090189 103090189 G A TEX10 Missense_Mutation p.H561Y 0.18 tolerated(0.77) benign(0.001) TCGA-C5-A8YR-01 9 114874121 114874121 C G SUSD1 Splice_Site p.X329_splice 0.55 TCGA-C5-A8YR-01 9 118997852 118997852 C T PAPPA Missense_Mutation p.R890W 0.56 deleterious(0) possibly_damaging(0.689) TCGA-C5-A8YR-01 9 124751512 124751512 C T TTLL11 Missense_Mutation p.D501N 0.12 tolerated(0.08) possibly_damaging(0.681) TCGA-C5-A8YR-01 9 35662537 35662537 G A ARHGEF39 Missense_Mutation p.S292L 0.22 deleterious(0) possibly_damaging(0.834) TCGA-C5-A8YR-01 9 79328563 79328563 G A PRUNE2 Silent p.I277I 0.34 TCGA-C5-A8YR-01 X 118724583 118724583 G T NKRF Missense_Mutation p.L284I 0.18 tolerated(0.06) possibly_damaging(0.547) TCGA-C5-A8YR-01 X 122771908 122771908 G C THOC2 Nonsense_Mutation p.S636* 0.31 TCGA-C5-A8YR-01 X 149767104 149767104 G A MTM1 Missense_Mutation p.R62K 0.20 tolerated(0.44) benign(0.014) TCGA-C5-A8YR-01 X 151820086 151820086 C T GABRQ Silent p.L333L 0.31 TCGA-C5-A8YR-01 X 152915548 152915548 G C DUSP9 Missense_Mutation p.D315H 0.48 deleterious(0) probably_damaging(1) TCGA-C5-A8YR-01 X 153713700 153713700 C G UBL4A 3'UTR 0.17 TCGA-C5-A8YR-01 X 41201837 41201838 - TC DDX3X Frame_Shift_Ins p.R126Lfs*96 0.34 TCGA-C5-A8YR-01 X 54839432 54839432 C G MAGED2 Missense_Mutation p.F380L 0.58 deleterious(0.02) probably_damaging(0.954) TCGA-C5-A8YR-01 X 66863233 66863233 C T AR Silent p.F584F 0.55 TCGA-C5-A8YR-01 X 70367890 70367890 G A NLGN3 Silent p.R97R 0.50 TCGA-C5-A8YR-01 X 72298133 72298133 G C PABPC1L2A 3'UTR 0.17 TCGA-C5-A8YR-01 X 73956980 73956980 C G KIAA2022 3'UTR 0.73 TCGA-C5-A8YR-01 X 90689884 90689884 G A PABPC5 5'UTR 0.24 TCGA-C5-A8YT-01 10 88683847 88683847 C T BMPR1A 3'UTR 0.07 TCGA-C5-A8YT-01 11 92085868 92085868 T C FAT3 Missense_Mutation p.F197S 0.06 probably_damaging(0.997) TCGA-C5-A8YT-01 15 51687069 51687069 A G GLDN Silent p.G193G 0.06 TCGA-C5-A8YT-01 17 67538414 67538414 C T MAP2K6 3'UTR 0.11 TCGA-C5-A8YT-01 3 183885731 183885731 C T DVL3 Missense_Mutation p.T459M 0.05 tolerated(0.23) probably_damaging(0.97) TCGA-C5-A8ZZ-01 10 104836010 104836010 G A CNNM2 Missense_Mutation p.D801N 0.28 deleterious(0.01) possibly_damaging(0.677) TCGA-C5-A8ZZ-01 10 118896051 118896051 G A VAX1 Missense_Mutation p.R121C 0.35 deleterious(0) unknown(0) TCGA-C5-A8ZZ-01 10 119042737 119042737 A G PDZD8 3'UTR 0.20 TCGA-C5-A8ZZ-01 10 134896320 134896320 C T GPR123-AS1 3'Flank 0.37 TCGA-C5-A8ZZ-01 10 49998880 49998880 A G WDFY4 Missense_Mutation p.Y1392C 0.27 deleterious(0) probably_damaging(0.996) TCGA-C5-A8ZZ-01 10 86274830 86274830 T C CCSER2 3'UTR 0.37 TCGA-C5-A8ZZ-01 11 117164589 117164589 T C BACE1 Missense_Mutation p.M235V 0.21 deleterious(0.01) possibly_damaging(0.685) TCGA-C5-A8ZZ-01 11 124412943 124412943 G A OR8B12 Missense_Mutation p.A203V 0.15 deleterious_low_confidence(0.01) benign(0.049) TCGA-C5-A8ZZ-01 11 5364662 5364662 G C OR51B5 Missense_Mutation p.F31L 0.30 tolerated(0.66) benign(0.001) TCGA-C5-A8ZZ-01 11 55652921 55652921 T C TRIM51 Missense_Mutation p.L6S 0.44 tolerated(0.79) benign(0.117) TCGA-C5-A8ZZ-01 11 56949280 56949280 C G LRRC55 5'UTR 0.16 TCGA-C5-A8ZZ-01 11 63177373 63177373 G A SLC22A9 3'UTR 0.29 TCGA-C5-A8ZZ-01 11 64884177 64884177 G A ZNHIT2 Silent p.L317L 0.29 TCGA-C5-A8ZZ-01 12 120907236 120907236 G A SRSF9 Silent p.F59F 0.34 TCGA-C5-A8ZZ-01 12 14649211 14649211 T A ATF7IP Missense_Mutation p.N1109K 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-C5-A8ZZ-01 12 49162219 49162219 C T ADCY6 3'UTR 0.40 TCGA-C5-A8ZZ-01 12 53607845 53607845 G C RARG Missense_Mutation p.L271V 0.50 deleterious(0) probably_damaging(0.999) TCGA-C5-A8ZZ-01 12 55421967 55421967 G A NEUROD4 3'UTR 0.17 TCGA-C5-A8ZZ-01 12 75434309 75434309 T A KCNC2 3'UTR 0.29 TCGA-C5-A8ZZ-01 12 9833577 9833577 C A CLEC2D Missense_Mutation p.F40L 0.10 tolerated(0.66) benign(0.018) TCGA-C5-A8ZZ-01 13 108882521 108882521 G C ABHD13 Missense_Mutation p.V319L 0.17 tolerated(0.72) benign(0) TCGA-C5-A8ZZ-01 13 27690723 27690730 GCATTGGC - USP12 Frame_Shift_Del p.A18Ffs*16 0.17 TCGA-C5-A8ZZ-01 13 29278121 29278121 C T SLC46A3 Silent p.L420L 0.32 TCGA-C5-A8ZZ-01 13 48955572 48955572 G C RB1 Missense_Mutation p.W563S 0.50 deleterious(0) probably_damaging(1) TCGA-C5-A8ZZ-01 14 64595173 64595173 G A SYNE2 Missense_Mutation p.E4641K 0.11 probably_damaging(0.999) TCGA-C5-A8ZZ-01 14 64935513 64935513 G A AKAP5 Missense_Mutation p.R134K 0.16 tolerated(0.39) benign(0.003) TCGA-C5-A8ZZ-01 14 93429142 93429142 A G ITPK1 Silent p.D139D 0.29 TCGA-C5-A8ZZ-01 14 96953288 96953288 G C AK7 Missense_Mutation p.Q676H 0.19 tolerated(0.12) probably_damaging(0.972) TCGA-C5-A8ZZ-01 15 25227221 25227221 A G SNRPN 3'Flank 0.40 TCGA-C5-A8ZZ-01 15 43029285 43029285 C G CDAN1 Missense_Mutation p.E6Q 0.27 tolerated(0.13) probably_damaging(0.943) TCGA-C5-A8ZZ-01 15 54586239 54586239 A G UNC13C Missense_Mutation p.E1322G 0.23 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-C5-A8ZZ-01 15 86273778 86273778 C A AKAP13 Silent p.L2378L 0.26 TCGA-C5-A8ZZ-01 16 2150248 2150248 C T PKD1 Missense_Mutation p.A3211T 0.07 benign(0.007) TCGA-C5-A8ZZ-01 16 27079138 27079138 A G C16orf82 RNA 0.23 TCGA-C5-A8ZZ-01 16 3565549 3565549 C T CLUAP1 Silent p.N179N 0.41 TCGA-C5-A8ZZ-01 17 27963363 27963363 G C SSH2 Missense_Mutation p.L602V 0.43 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-C5-A8ZZ-01 17 29556079 29556079 C T NF1 Nonsense_Mutation p.R816* 0.48 TCGA-C5-A8ZZ-01 17 38350155 38350155 C T RAPGEFL1 3'UTR 0.15 TCGA-C5-A8ZZ-01 17 47295175 47295175 C T ABI3 Silent p.P120P 0.31 TCGA-C5-A8ZZ-01 17 48432345 48432345 G A XYLT2 Missense_Mutation p.R312Q 0.26 tolerated(0.88) benign(0.001) TCGA-C5-A8ZZ-01 17 5377947 5377947 T A DERL2 3'UTR 0.70 TCGA-C5-A8ZZ-01 17 68128406 68128406 G C KCNJ16 Missense_Mutation p.D60H 0.20 deleterious(0) probably_damaging(0.999) TCGA-C5-A8ZZ-01 17 79005048 79005048 G A BAIAP2 5'Flank 0.50 TCGA-C5-A8ZZ-01 18 14763694 14763694 C A ANKRD30B Missense_Mutation p.S277Y 0.19 deleterious(0.02) possibly_damaging(0.904) TCGA-C5-A8ZZ-01 18 14848747 14848747 C G ANKRD30B Missense_Mutation p.L953V 0.11 tolerated(1) benign(0) TCGA-C5-A8ZZ-01 18 33272176 33272176 G T GALNT1 Silent p.S397S 0.21 TCGA-C5-A8ZZ-01 18 7011417 7011417 G A LAMA1 Missense_Mutation p.T1190M 0.37 deleterious(0) probably_damaging(0.953) TCGA-C5-A8ZZ-01 18 72250932 72250932 A G CNDP1 Missense_Mutation p.E482G 0.35 deleterious(0) probably_damaging(1) TCGA-C5-A8ZZ-01 18 9522410 9522410 C A RALBP1 Missense_Mutation p.S319Y 0.28 deleterious(0) benign(0.346) TCGA-C5-A8ZZ-01 19 14159994 14159994 C T IL27RA Nonsense_Mutation p.R424* 0.27 TCGA-C5-A8ZZ-01 19 17270262 17270262 G A MYO9B Missense_Mutation p.D463N 0.19 deleterious(0.02) probably_damaging(0.989) TCGA-C5-A8ZZ-01 19 21910701 21910701 T C ZNF100 Missense_Mutation p.Y138C 0.07 tolerated(1) benign(0) TCGA-C5-A8ZZ-01 19 22018854 22018854 G A ZNF43 5'UTR 0.32 TCGA-C5-A8ZZ-01 19 42751845 42751845 A G ERF 3'UTR 0.37 TCGA-C5-A8ZZ-01 19 53571973 53571973 C T ZNF160 Missense_Mutation p.R605H 0.12 tolerated(0.35) benign(0.001) TCGA-C5-A8ZZ-01 19 630069 630069 T C POLRMT Missense_Mutation p.D98G 0.12 tolerated(0.41) benign(0) TCGA-C5-A8ZZ-01 1 110024689 110024689 T C SYPL2 3'UTR 0.19 TCGA-C5-A8ZZ-01 1 200817855 200817855 G A CAMSAP2 Missense_Mutation p.R653Q 0.16 tolerated(0.09) benign(0.02) TCGA-C5-A8ZZ-01 1 248343890 248343890 C T OR2M2 Silent p.I201I 0.32 TCGA-C5-A8ZZ-01 1 40033476 40033476 C A PABPC4 Missense_Mutation p.D307Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-C5-A8ZZ-01 1 44878072 44878072 C T RNF220 Silent p.P101P 0.31 TCGA-C5-A8ZZ-01 1 94497594 94497594 C T ABCA4 Missense_Mutation p.A1290T 0.08 tolerated(1) benign(0.001) TCGA-C5-A8ZZ-01 20 31995971 31995971 G A SNTA1 3'UTR 0.36 TCGA-C5-A8ZZ-01 20 9518526 9518527 - T PAK7 3'UTR 0.44 TCGA-C5-A8ZZ-01 21 10944699 10944699 A C TPTE Missense_Mutation p.F179V 0.05 tolerated(0.28) benign(0.03) TCGA-C5-A8ZZ-01 21 15352294 15352294 T C ANKRD20A11P 5'Flank 0.24 TCGA-C5-A8ZZ-01 21 33825678 33825678 G C EVA1C Missense_Mutation p.L73F 0.06 deleterious(0) probably_damaging(0.999) TCGA-C5-A8ZZ-01 21 35774539 35774539 T C C21orf140 5'Flank 0.33 TCGA-C5-A8ZZ-01 22 42972000 42972000 G A SERHL2 3'Flank 0.28 TCGA-C5-A8ZZ-01 22 50897965 50897965 G A SBF1 Missense_Mutation p.R1208C 0.39 deleterious(0) probably_damaging(0.999) TCGA-C5-A8ZZ-01 2 105859282 105859282 G A GPR45 Missense_Mutation p.V323I 0.31 tolerated(1) benign(0.012) TCGA-C5-A8ZZ-01 2 133430321 133430321 A G NCKAP5 3'UTR 0.22 TCGA-C5-A8ZZ-01 2 136562518 136562518 C T LCT Missense_Mutation p.S1428N 0.44 deleterious(0) probably_damaging(1) TCGA-C5-A8ZZ-01 2 178491002 178491002 G T PDE11A 3'UTR 0.25 TCGA-C5-A8ZZ-01 2 207804280 207804280 A G CPO 5'UTR 0.27 TCGA-C5-A8ZZ-01 2 210558747 210558747 A T MAP2 Missense_Mutation p.K618M 0.36 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-C5-A8ZZ-01 2 210843400 210843400 C T UNC80 Missense_Mutation p.T2963I 0.20 probably_damaging(0.994) TCGA-C5-A8ZZ-01 2 219509027 219509027 C T ZNF142 Missense_Mutation p.E738K 0.30 tolerated(0.17) benign(0.292) TCGA-C5-A8ZZ-01 2 231155214 231155214 C G SP140 Missense_Mutation p.A587G 0.11 tolerated(0.09) possibly_damaging(0.758) TCGA-C5-A8ZZ-01 2 238262035 238262035 G A COL6A3 Silent p.G2213G 0.34 TCGA-C5-A8ZZ-01 2 61765269 61765269 G A XPO1 5'UTR 0.09 TCGA-C5-A8ZZ-01 3 132056331 132056331 G A ACPP Missense_Mutation p.R163H 0.38 deleterious(0.02) benign(0.058) TCGA-C5-A8ZZ-01 3 140401943 140401943 C A TRIM42 Silent p.I327I 0.81 TCGA-C5-A8ZZ-01 3 182603785 182603785 T C ATP11B Missense_Mutation p.L901S 0.12 tolerated(0.22) benign(0.181) TCGA-C5-A8ZZ-01 3 42826711 42826711 A C HIGD1A 3'Flank 0.60 TCGA-C5-A8ZZ-01 3 86990609 86990609 T A VGLL3 3'UTR 0.27 TCGA-C5-A8ZZ-01 3 89456446 89456446 A G EPHA3 Missense_Mutation p.Q541R 0.13 tolerated(0.28) benign(0.419) TCGA-C5-A8ZZ-01 4 69817060 69817060 T C UGT2A3 Missense_Mutation p.E140G 0.29 tolerated(0.07) benign(0.392) TCGA-C5-A8ZZ-01 4 72121090 72121090 C T SLC4A4 Missense_Mutation p.S76F 0.42 deleterious(0.01) benign(0.057) TCGA-C5-A8ZZ-01 5 140590095 140590095 C T PCDHB12 Missense_Mutation p.P539L 0.39 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-C5-A8ZZ-01 5 59983043 59983043 G A DEPDC1B Silent p.T20T 0.31 TCGA-C5-A8ZZ-01 5 75893313 75893313 C T IQGAP2 Silent p.P319P 0.34 TCGA-C5-A8ZZ-01 6 155497988 155497988 C T TIAM2 Silent p.D800D 0.28 TCGA-C5-A8ZZ-01 6 27805958 27805958 C T HIST1H2AK Missense_Mutation p.A54T 0.31 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-C5-A8ZZ-01 6 32796646 32796646 G A TAP2 Intron 0.33 TCGA-C5-A8ZZ-01 6 33246548 33246548 T G B3GALT4 3'UTR 0.15 TCGA-C5-A8ZZ-01 6 36569508 36569508 G A SRSF3 Missense_Mutation p.R135K 0.29 deleterious_low_confidence(0.02) unknown(0) TCGA-C5-A8ZZ-01 6 3850865 3850865 G A FAM50B Missense_Mutation p.V274M 0.41 deleterious(0) probably_damaging(0.977) TCGA-C5-A8ZZ-01 6 84871501 84871501 T C KIAA1009 Silent p.R880R 0.21 TCGA-C5-A8ZZ-01 6 96657759 96657759 C G FUT9 3'UTR 0.13 TCGA-C5-A8ZZ-01 6 98472417 98472417 A G MIR2113 RNA 0.31 TCGA-C5-A8ZZ-01 7 151873463 151873463 C A KMT2C Missense_Mutation p.M3025I 0.12 benign(0.001) TCGA-C5-A8ZZ-01 7 36445999 36445999 G A ANLN Missense_Mutation p.A233T 0.32 tolerated(1) benign(0) TCGA-C5-A8ZZ-01 7 45122375 45122375 G A NACAD Missense_Mutation p.P1135L 0.56 tolerated(1) benign(0.001) TCGA-C5-A8ZZ-01 7 50467837 50467837 A G IKZF1 Missense_Mutation p.T316A 0.45 tolerated(0.78) benign(0.002) TCGA-C5-A8ZZ-01 7 66460339 66460339 A G SBDS Silent p.R22R 0.06 TCGA-C5-A8ZZ-01 7 81643781 81643781 C T CACNA2D1 Silent p.T386T 0.33 TCGA-C5-A8ZZ-01 7 96639257 96639257 G A DLX6 Silent p.S260S 0.38 TCGA-C5-A8ZZ-01 8 110586899 110586899 T G SYBU 3'UTR 0.25 TCGA-C5-A8ZZ-01 8 132052655 132052655 C T ADCY8 5'UTR 0.38 TCGA-C5-A8ZZ-01 8 21562561 21562561 G A GFRA2 Silent p.G327G 0.40 TCGA-C5-A8ZZ-01 8 22333121 22333121 G C PPP3CC Missense_Mutation p.G119A 0.44 deleterious(0) probably_damaging(1) TCGA-C5-A8ZZ-01 8 3611563 3611563 G T CSMD1 Missense_Mutation p.L274I 0.19 possibly_damaging(0.714) TCGA-C5-A8ZZ-01 8 8176658 8176658 G A SGK223 Missense_Mutation p.T1076I 0.27 benign(0.001) TCGA-C5-A8ZZ-01 8 89052053 89052053 T A MMP16 3'UTR 0.25 TCGA-C5-A8ZZ-01 9 132580832 132580832 C T TOR1A Missense_Mutation p.A239T 0.27 tolerated(0.39) benign(0.022) TCGA-C5-A8ZZ-01 9 39149881 39149881 A G CNTNAP3 Missense_Mutation p.V524A 0.27 tolerated(0.15) benign(0.176) TCGA-C5-A8ZZ-01 9 77339535 77339535 T C TRPM6 Silent p.Q2021Q 0.15 TCGA-C5-A8ZZ-01 9 96261163 96261163 A G FAM120A Missense_Mutation p.Y342C 0.18 deleterious(0.02) probably_damaging(0.927) TCGA-C5-A8ZZ-01 X 106224203 106224203 A C MORC4 Missense_Mutation p.L285R 0.41 deleterious(0) probably_damaging(0.999) TCGA-C5-A8ZZ-01 X 109416530 109416530 G A TMEM164 Missense_Mutation p.G249S 0.17 deleterious(0) probably_damaging(1) TCGA-C5-A8ZZ-01 X 11162212 11162212 C T ARHGAP6 Silent p.A688A 0.17 TCGA-C5-A8ZZ-01 X 115585498 115585498 A C SLC6A14 Missense_Mutation p.T432P 0.30 deleterious(0.01) probably_damaging(0.953) TCGA-C5-A8ZZ-01 X 127185485 127185485 C T ACTRT1 Missense_Mutation p.R234Q 0.24 tolerated(0.09) benign(0.038) TCGA-C5-A8ZZ-01 X 135593267 135593267 G A HTATSF1 Missense_Mutation p.E455K 0.11 tolerated_low_confidence(0.23) benign(0.022) TCGA-C5-A8ZZ-01 X 150780159 150780159 A G PASD1 Silent p.T47T 0.17 TCGA-C5-A8ZZ-01 X 16759848 16759848 T C SYAP1 Missense_Mutation p.V124A 0.28 deleterious(0) benign(0.188) TCGA-C5-A8ZZ-01 X 19413271 19413271 T C MAP3K15 Missense_Mutation p.N708D 0.17 deleterious(0.01) possibly_damaging(0.497) TCGA-C5-A8ZZ-01 X 22244611 22244611 C T PHEX Missense_Mutation p.R651W 0.37 deleterious(0) probably_damaging(1) TCGA-C5-A8ZZ-01 X 27765483 27765483 C T DCAF8L2 Silent p.G157G 0.32 TCGA-C5-A8ZZ-01 X 37027201 37027201 G A FAM47C Missense_Mutation p.E240K 0.23 tolerated(0.6) benign(0) TCGA-C5-A8ZZ-01 X 37698406 37698406 A G DYNLT3 3'UTR 0.70 TCGA-C5-A8ZZ-01 X 48839435 48839435 C T GRIPAP1 Missense_Mutation p.D519N 0.25 possibly_damaging(0.702) TCGA-C5-A8ZZ-01 X 49033266 49033266 G T PRICKLE3 Missense_Mutation p.T414K 0.44 tolerated(0.16) benign(0.004) TCGA-C5-A8ZZ-01 X 50052565 50052565 C A CCNB3 Missense_Mutation p.P466T 0.35 tolerated(0.67) benign(0.015) TCGA-C5-A8ZZ-01 X 50341397 50341397 C G SHROOM4 Missense_Mutation p.E1361Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-C5-A8ZZ-01 X 50654045 50654045 C T BMP15 Missense_Mutation p.R88C 0.30 deleterious(0) probably_damaging(0.991) TCGA-C5-A8ZZ-01 X 53658407 53658407 C T HUWE1 Missense_Mutation p.E241K 0.37 benign(0.289) TCGA-C5-A8ZZ-01 X 64722979 64722979 A G ZC3H12B Missense_Mutation p.N801D 0.46 deleterious(0) probably_damaging(0.997) TCGA-C5-A8ZZ-01 X 86087159 86087159 A G DACH2 3'UTR 0.30 TCGA-C5-A8ZZ-01 X 96139848 96139848 T C RPA4 Missense_Mutation p.V180A 0.44 tolerated(1) benign(0.001) TCGA-C5-A901-01 10 126311770 126311770 C T FAM53B 3'UTR 0.61 TCGA-C5-A901-01 10 47754760 47754760 C T ANXA8L2 Missense_Mutation p.R123W 0.61 deleterious(0) probably_damaging(1) TCGA-C5-A901-01 10 65024473 65024473 C T JMJD1C Missense_Mutation p.E129K 0.59 deleterious(0.01) probably_damaging(0.993) TCGA-C5-A901-01 10 75265137 75265137 C T USP54 Missense_Mutation p.G1367S 0.65 deleterious(0.05) benign(0.146) TCGA-C5-A901-01 10 75552398 75552398 G A ZSWIM8 Missense_Mutation p.D701N 0.34 tolerated_low_confidence(0.36) possibly_damaging(0.669) TCGA-C5-A901-01 11 2170475 2170475 G A INS-IGF2 Silent p.G96G 0.06 TCGA-C5-A901-01 11 55587630 55587630 C T OR5D18 Silent p.I175I 0.40 TCGA-C5-A901-01 11 56043294 56043294 G A OR5T1 Silent p.P60P 0.45 TCGA-C5-A901-01 11 610345 610345 C T PHRF1 Nonsense_Mutation p.Q1471* 0.48 TCGA-C5-A901-01 11 617023 617023 C T CDHR5 3'UTR 0.24 TCGA-C5-A901-01 11 66043647 66043647 G A RAB1B Missense_Mutation p.E182K 0.22 tolerated(0.79) benign(0) TCGA-C5-A901-01 11 68660873 68660873 G A MRPL21 Silent p.L149L 0.46 TCGA-C5-A901-01 11 7334714 7334714 G C SYT9 Missense_Mutation p.G196R 0.22 deleterious(0.02) probably_damaging(1) TCGA-C5-A901-01 11 75110577 75110577 G A RPS3 5'UTR 0.52 TCGA-C5-A901-01 12 109334561 109334561 A G SVOP Missense_Mutation p.F191S 0.09 tolerated(0.4) possibly_damaging(0.587) TCGA-C5-A901-01 12 15134365 15134365 C T PDE6H Silent p.F69F 0.20 TCGA-C5-A901-01 12 50344867 50344867 G A AQP2 Missense_Mutation p.R85Q 0.23 deleterious(0.04) probably_damaging(0.98) TCGA-C5-A901-01 12 7252312 7252312 C T C1RL Missense_Mutation p.D221N 0.27 tolerated(0.35) benign(0.003) TCGA-C5-A901-01 13 21549417 21549417 G A LATS2 Silent p.C953C 0.57 TCGA-C5-A901-01 13 31035230 31035230 G A HMGB1 3'UTR 0.24 TCGA-C5-A901-01 13 58299951 58299951 C T PCDH17 3'UTR 0.51 TCGA-C5-A901-01 13 60554994 60554994 C T DIAPH3 Splice_Site p.X494_splice 0.15 TCGA-C5-A901-01 14 45396650 45396650 G A KLHL28 3'UTR 0.26 TCGA-C5-A901-01 14 50883157 50883157 C T MAP4K5 3'Flank 0.06 TCGA-C5-A901-01 14 51706904 51706904 C G TMX1 5'UTR 0.29 TCGA-C5-A901-01 14 57271047 57271047 C T OTX2 Silent p.R44R 0.27 TCGA-C5-A901-01 14 58839271 58839271 G A ARID4A 3'UTR 0.12 TCGA-C5-A901-01 14 58839272 58839272 G A ARID4A 3'UTR 0.13 TCGA-C5-A901-01 14 72090870 72090870 C T SIPA1L1 Missense_Mutation p.P579S 0.38 deleterious(0) probably_damaging(0.996) TCGA-C5-A901-01 14 88940104 88940104 G A PTPN21 Missense_Mutation p.L852F 0.46 deleterious(0) probably_damaging(0.999) TCGA-C5-A901-01 15 23330269 23330269 G T HERC2P2 RNA 0.28 TCGA-C5-A901-01 15 38786963 38786963 C G RASGRP1 Missense_Mutation p.E627Q 0.16 tolerated(0.18) possibly_damaging(0.821) TCGA-C5-A901-01 15 89760353 89760353 C T RLBP1 Missense_Mutation p.R115K 0.28 tolerated(1) benign(0.001) TCGA-C5-A901-01 15 93616343 93616343 G A RGMA Intron 0.26 TCGA-C5-A901-01 15 99501000 99501004 CTCTC TCTT IGF1R 3'UTR 0.22 TCGA-C5-A901-01 15 99502389 99502389 C G IGF1R 3'UTR 0.20 TCGA-C5-A901-01 15 99502596 99502596 C T IGF1R 3'UTR 0.31 TCGA-C5-A901-01 16 1912118 1912118 C T MEIOB Splice_Site p.X43_splice 0.22 TCGA-C5-A901-01 16 20084822 20084822 G A GPR139 Silent p.L39L 0.21 TCGA-C5-A901-01 16 29828302 29828302 G A PAGR1 Silent p.P152P 0.28 TCGA-C5-A901-01 16 3454862 3454862 G A ZNF174 Intron 0.36 TCGA-C5-A901-01 16 34739560 34739560 G C RP11-80F22.15 RNA 0.36 TCGA-C5-A901-01 16 65032498 65032498 A G CDH11 Missense_Mutation p.Y164H 0.14 deleterious(0.01) probably_damaging(0.939) TCGA-C5-A901-01 16 66997732 66997732 C T CES3 Silent p.L152L 0.40 TCGA-C5-A901-01 16 70187471 70187471 G A PDPR Missense_Mutation p.E744K 0.12 tolerated(0.09) benign(0.069) TCGA-C5-A901-01 17 39383222 39383222 G C KRTAP9-2 Missense_Mutation p.G106R 0.34 deleterious(0.01) unknown(0) TCGA-C5-A901-01 17 41131425 41131425 C T PTGES3L-AARSD1 Silent p.E96E 0.19 TCGA-C5-A901-01 17 42226181 42226181 G A C17orf53 Missense_Mutation p.R337Q 0.27 tolerated(0.58) benign(0.007) TCGA-C5-A901-01 17 71281769 71281769 G A CDC42EP4 Missense_Mutation p.P291S 0.60 tolerated(0.16) probably_damaging(0.997) TCGA-C5-A901-01 17 72590315 72590315 G C C17orf77 3'UTR 0.21 TCGA-C5-A901-01 17 8044014 8044015 GA - PER1 3'UTR 0.23 TCGA-C5-A901-01 18 32459637 32459637 G C DTNA Missense_Mutation p.G619R 0.46 tolerated_low_confidence(0.13) benign(0.154) TCGA-C5-A901-01 19 12903485 12903485 G A JUNB Silent p.V300V 0.27 TCGA-C5-A901-01 19 1877388 1877388 G A ABHD17A Silent p.L299L 0.25 TCGA-C5-A901-01 19 33873122 33873122 C T CEBPG 3'UTR 0.46 TCGA-C5-A901-01 19 37119244 37119244 G C ZNF382 3'UTR 0.07 TCGA-C5-A901-01 19 37734311 37734311 G A ZNF383 Silent p.E391E 0.04 TCGA-C5-A901-01 19 38694828 38694828 C T SIPA1L3 Silent p.L1728L 0.09 TCGA-C5-A901-01 1 100984263 100984263 T C CDC14A 3'UTR 0.22 TCGA-C5-A901-01 1 13109018 13109018 C T PRAMEF23 RNA 0.14 TCGA-C5-A901-01 1 149764206 149764206 T C HIST2H2BF Intron 0.24 TCGA-C5-A901-01 1 152882258 152882258 G A IVL 5'UTR 0.36 TCGA-C5-A901-01 1 152883021 152883021 G C IVL Missense_Mutation p.E250Q 0.14 tolerated(0.05) possibly_damaging(0.563) TCGA-C5-A901-01 1 156262991 156262991 G A C1orf85 Silent p.L355L 0.12 TCGA-C5-A901-01 1 171535871 171535871 C T PRRC2C Silent p.V2147V 0.29 TCGA-C5-A901-01 1 181452893 181452893 G A CACNA1E Missense_Mutation p.G5R 0.32 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-C5-A901-01 1 18692121 18692121 C T IGSF21 Silent p.N315N 0.29 TCGA-C5-A901-01 1 200965341 200965341 C T KIF21B Missense_Mutation p.E754K 0.30 deleterious(0.02) benign(0.002) TCGA-C5-A901-01 1 202122964 202122964 C A PTPN7 Splice_Site p.X308_splice 0.47 TCGA-C5-A901-01 1 222828082 222828082 G A MIA3 Silent p.Q1518Q 0.28 TCGA-C5-A901-01 1 226829754 226829754 C T ITPKB Missense_Mutation p.M773I 0.27 deleterious(0) probably_damaging(0.949) TCGA-C5-A901-01 1 24288386 24288386 A G PNRC2 3'UTR 0.15 TCGA-C5-A901-01 1 24288402 24288402 G A PNRC2 3'UTR 0.14 TCGA-C5-A901-01 1 32145111 32145111 G A COL16A1 Intron 0.24 TCGA-C5-A901-01 1 45206677 45206677 G C KIF2C Missense_Mutation p.E55Q 0.07 deleterious(0.02) benign(0.141) TCGA-C5-A901-01 1 47150143 47150143 G C EFCAB14 Intron 0.06 TCGA-C5-A901-01 1 52250116 52250116 C T OSBPL9 Missense_Mutation p.S574F 0.09 deleterious(0) probably_damaging(1) TCGA-C5-A901-01 1 55266512 55266512 C T TTC22 Missense_Mutation p.V109M 0.63 deleterious(0) probably_damaging(0.975) TCGA-C5-A901-01 20 13371089 13371089 G C TASP1 Nonsense_Mutation p.S394* 0.26 TCGA-C5-A901-01 20 31023318 31023318 C G ASXL1 Missense_Mutation p.P935A 0.16 tolerated_low_confidence(0.44) benign(0.003) TCGA-C5-A901-01 20 31893819 31893819 G A BPIFB1 Silent p.L422L 0.34 TCGA-C5-A901-01 20 6093206 6093206 C T FERMT1 Silent p.K150K 0.66 TCGA-C5-A901-01 20 9417661 9417661 G A PLCB4 Missense_Mutation p.D864N 0.44 tolerated(0.06) benign(0.421) TCGA-C5-A901-01 22 24810596 24810596 G A SPECC1L 3'UTR 0.07 TCGA-C5-A901-01 22 32112585 32112585 G C PRR14L Missense_Mutation p.L414V 0.18 tolerated(0.3) benign(0.133) TCGA-C5-A901-01 22 39146347 39146347 G A SUN2 Missense_Mutation p.P156S 0.08 deleterious(0.04) benign(0.002) TCGA-C5-A901-01 22 44342537 44342537 C T PNPLA3 3'UTR 0.27 TCGA-C5-A901-01 22 44514996 44514996 G A PARVB Missense_Mutation p.G151S 0.22 deleterious(0) probably_damaging(0.999) TCGA-C5-A901-01 2 130792814 130792814 A C FAR2P1 5'Flank 0.05 TCGA-C5-A901-01 2 130792817 130792817 G A FAR2P1 5'Flank 0.06 TCGA-C5-A901-01 2 130807457 130807457 A G CYP4F27P 5'Flank 0.08 TCGA-C5-A901-01 2 130910188 130910188 A G SMPD4 Silent p.Y847Y 0.07 TCGA-C5-A901-01 2 130910210 130910210 G A SMPD4 Missense_Mutation p.T840M 0.07 deleterious(0.03) probably_damaging(0.968) TCGA-C5-A901-01 2 15557773 15557773 G C NBAS Missense_Mutation p.L881V 0.23 deleterious(0) possibly_damaging(0.582) TCGA-C5-A901-01 2 168096374 168096374 C T XIRP2 Missense_Mutation p.H290Y 0.36 benign(0.005) TCGA-C5-A901-01 2 204001411 204001411 G A NBEAL1 Nonsense_Mutation p.W1464* 0.31 TCGA-C5-A901-01 2 210557543 210557543 G A MAP2 Missense_Mutation p.E217K 0.46 tolerated_low_confidence(0.05) benign(0.071) TCGA-C5-A901-01 2 89111046 89111046 C A MIR4436A 5'Flank 0.12 TCGA-C5-A901-01 2 96581736 96581736 G C ANKRD36C Missense_Mutation p.S814C 0.29 tolerated_low_confidence(0.33) possibly_damaging(0.709) TCGA-C5-A901-01 2 97427352 97427352 C T CNNM4 Missense_Mutation p.L206F 0.24 deleterious(0) probably_damaging(0.999) TCGA-C5-A901-01 2 97427705 97427705 C T CNNM4 Silent p.L323L 0.46 TCGA-C5-A901-01 3 100530095 100530095 C T ABI3BP Intron 0.24 TCGA-C5-A901-01 3 195506591 195506591 G A MUC4 Missense_Mutation p.P3954S 0.26 possibly_damaging(0.453) TCGA-C5-A901-01 3 37095037 37095037 G A LRRFIP2 3'UTR 0.37 TCGA-C5-A901-01 3 44283414 44283414 C T TOPAZ1 5'UTR 0.66 TCGA-C5-A901-01 3 53322199 53322199 C G DCP1A Missense_Mutation p.E520Q 0.55 tolerated(0.08) probably_damaging(0.999) TCGA-C5-A901-01 3 9547687 9547687 C T LHFPL4 Missense_Mutation p.D203N 0.32 tolerated(0.39) benign(0.009) TCGA-C5-A901-01 4 126373823 126373823 T C FAT4 Silent p.F3884F 0.22 TCGA-C5-A901-01 4 25392548 25392548 C T ANAPC4 Missense_Mutation p.L206F 0.31 tolerated(0.33) benign(0.312) TCGA-C5-A901-01 4 85623578 85623578 C T WDFY3 Missense_Mutation p.D2842N 0.34 deleterious(0) probably_damaging(1) TCGA-C5-A901-01 5 102345454 102345454 G T PAM Splice_Site p.X739_splice 0.31 TCGA-C5-A901-01 5 140222773 140222773 C T PCDHA8 Missense_Mutation p.R623C 0.22 deleterious_low_confidence(0) benign(0.385) TCGA-C5-A901-01 5 140482203 140482203 C A PCDHB3 Missense_Mutation p.T657K 0.21 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-C5-A901-01 5 161909 161909 G A PLEKHG4B Silent p.Q477Q 0.67 TCGA-C5-A901-01 5 179132823 179132823 A G CANX Silent p.P47P 0.60 TCGA-C5-A901-01 5 41018879 41018879 C T MROH2B Missense_Mutation p.E863K 0.31 tolerated(0.6) benign(0.026) TCGA-C5-A901-01 5 55259290 55259290 C T IL6ST Missense_Mutation p.E235K 0.10 tolerated(0.23) benign(0.068) TCGA-C5-A901-01 5 82554653 82554653 C T XRCC4 Intron 0.27 TCGA-C5-A901-01 5 82648973 82648973 C T XRCC4 Missense_Mutation p.T308M 0.35 tolerated(0.2) probably_damaging(0.996) TCGA-C5-A901-01 6 105614424 105614424 G A POPDC3 Intron 0.30 TCGA-C5-A901-01 6 110959910 110959910 C T CDK19 Splice_Site p.X153_splice 0.28 TCGA-C5-A901-01 6 118881090 118881090 A G PLN 3'UTR 0.31 TCGA-C5-A901-01 6 158834158 158834158 G A TULP4 Missense_Mutation p.G105D 0.39 tolerated(0.2) probably_damaging(0.999) TCGA-C5-A901-01 6 30638184 30638184 C T DHX16 Intron 0.27 TCGA-C5-A901-01 6 46803249 46803249 G A MEP1A Missense_Mutation p.G683S 0.08 deleterious(0.01) possibly_damaging(0.849) TCGA-C5-A901-01 6 7288096 7288096 G A SSR1 3'UTR 0.23 TCGA-C5-A901-01 6 76376559 76376559 G A SENP6 Missense_Mutation p.E376K 0.26 tolerated(0.09) probably_damaging(0.991) TCGA-C5-A901-01 7 100679898 100679898 C G MUC17 Missense_Mutation p.S1734C 0.32 probably_damaging(0.92) TCGA-C5-A901-01 7 105662648 105662648 C T CDHR3 Silent p.N610N 0.33 TCGA-C5-A901-01 7 12728235 12728235 C A ARL4A Missense_Mutation p.T119N 0.08 deleterious(0.03) possibly_damaging(0.773) TCGA-C5-A901-01 7 129067084 129067084 G A AHCYL2 3'UTR 0.26 TCGA-C5-A901-01 7 138603329 138603329 G A KIAA1549 Missense_Mutation p.S348L 0.38 tolerated(0.12) benign(0.016) TCGA-C5-A901-01 7 32910169 32910169 G C KBTBD2 Missense_Mutation p.I220M 0.16 deleterious(0) possibly_damaging(0.548) TCGA-C5-A901-01 7 5273223 5273223 G A WIPI2 3'UTR 0.42 TCGA-C5-A901-01 7 81599240 81599240 G A CACNA2D1 Silent p.S755S 0.28 TCGA-C5-A901-01 7 99217616 99217616 G A ZSCAN25 Silent p.A129A 0.43 TCGA-C5-A901-01 8 144874981 144874981 C T SCRIB Silent p.Q1358Q 0.23 TCGA-C5-A901-01 8 145113027 145113027 T G OPLAH Missense_Mutation p.Y325S 0.60 deleterious(0) probably_damaging(0.968) TCGA-C5-A901-01 8 48733475 48733475 G A PRKDC Silent p.S3046S 0.27 TCGA-C5-A901-01 8 53852872 53852872 C T NPBWR1 Silent p.Y135Y 0.35 TCGA-C5-A901-01 8 54163481 54163481 G A OPRK1 Silent p.N39N 0.23 TCGA-C5-A901-01 8 61504483 61504483 C T RAB2A Silent p.L143L 0.12 TCGA-C5-A901-01 9 128003188 128003188 T A HSPA5 Splice_Site p.X41_splice 0.24 TCGA-C5-A901-01 9 130206746 130206746 G A ZNF79 Missense_Mutation p.R256K 0.30 tolerated(1) benign(0.002) TCGA-C5-A901-01 9 139747978 139747978 G A MAMDC4 Intron 0.38 TCGA-C5-A901-01 9 84549018 84549018 T C RP11-383M4.6 Intron 0.07 TCGA-C5-A901-01 9 84549026 84549026 C T RP11-383M4.6 Intron 0.07 TCGA-C5-A901-01 X 100106250 100106250 C T NOX1 Missense_Mutation p.R290H 0.43 deleterious(0) probably_damaging(0.953) TCGA-C5-A901-01 X 122613990 122613990 G A GRIA3 Intron 0.54 TCGA-C5-A901-01 X 123513014 123513014 T A TENM1 3'UTR 0.38 TCGA-C5-A901-01 X 151336731 151336731 G A GABRA3 Missense_Mutation p.S483L 0.25 deleterious(0.02) benign(0.001) TCGA-C5-A901-01 X 151336742 151336742 G C GABRA3 Silent p.V479V 0.24 TCGA-C5-A901-01 X 17744836 17744836 G T NHS Missense_Mutation p.K849N 0.22 tolerated(0.1) possibly_damaging(0.761) TCGA-C5-A901-01 X 17745572 17745572 C T NHS Nonsense_Mutation p.Q1095* 0.38 TCGA-C5-A901-01 X 20193338 20193338 T C RPS6KA3 Missense_Mutation p.T391A 0.22 tolerated(0.85) benign(0.001) TCGA-C5-A901-01 X 36090013 36090013 C G CHDC2 Missense_Mutation p.P39A 0.08 deleterious(0.05) benign(0.182) TCGA-C5-A901-01 X 45010764 45010764 C T CXorf36 3'UTR 0.45 TCGA-C5-A901-01 X 51149977 51149977 G A CXorf67 Missense_Mutation p.G37R 0.26 deleterious(0.04) benign(0.361) TCGA-C5-A901-01 X 53223863 53223863 G A KDM5C Missense_Mutation p.R1166C 0.22 deleterious(0.05) possibly_damaging(0.772) TCGA-C5-A901-01 X 62951976 62951976 G T ARHGEF9 Intron 0.73 TCGA-C5-A901-01 X 70823721 70823721 C T ACRC Silent p.D198D 0.25 TCGA-C5-A901-01 X 99662140 99662140 C T PCDH19 Missense_Mutation p.G486S 0.06 tolerated(0.17) probably_damaging(1) TCGA-C5-A902-01 10 102748904 102748904 C T C10orf2 Missense_Mutation p.R313W 0.33 deleterious(0) probably_damaging(0.973) TCGA-C5-A902-01 10 105344981 105344981 C T NEURL1 Silent p.L446L 0.20 TCGA-C5-A902-01 10 122278376 122278376 C T PPAPDC1A Silent p.V96V 0.19 TCGA-C5-A902-01 10 123845070 123845070 G A TACC2 Missense_Mutation p.E1019K 0.37 benign(0.11) TCGA-C5-A902-01 10 126677441 126677441 A G CTBP2 3'Flank 0.12 TCGA-C5-A902-01 10 128193356 128193356 G T C10orf90 Missense_Mutation p.A138E 0.40 deleterious(0) possibly_damaging(0.73) TCGA-C5-A902-01 10 13699435 13699435 G A FRMD4A Silent p.L718L 0.38 TCGA-C5-A902-01 10 16979746 16979746 C G CUBN Missense_Mutation p.G1924A 0.41 tolerated(0.22) benign(0.437) TCGA-C5-A902-01 10 18964976 18964976 G C ARL5B 3'UTR 0.42 TCGA-C5-A902-01 10 21074433 21074433 G A NEBL 3'UTR 0.33 TCGA-C5-A902-01 10 28905244 28905244 C T WAC Missense_Mutation p.L567F 0.28 deleterious(0) probably_damaging(0.998) TCGA-C5-A902-01 10 28906590 28906590 C G WAC Nonsense_Mutation p.S584* 0.36 TCGA-C5-A902-01 10 28908825 28908825 C G WAC 3'UTR 0.37 TCGA-C5-A902-01 10 29858216 29858216 G A SVIL 5'UTR 0.38 TCGA-C5-A902-01 10 31815974 31815974 G C ZEB1 Missense_Mutation p.E1054Q 0.38 tolerated_low_confidence(0.08) benign(0.403) TCGA-C5-A902-01 10 3821723 3821723 C T KLF6 3'UTR 0.20 TCGA-C5-A902-01 10 52103686 52103686 C T SGMS1 Missense_Mutation p.M63I 0.31 tolerated(0.22) benign(0.004) TCGA-C5-A902-01 10 5790857 5790857 G T FAM208B Nonsense_Mutation p.E1825* 0.25 TCGA-C5-A902-01 10 68859180 68859180 G C LRRTM3 3'UTR 0.43 TCGA-C5-A902-01 10 71883730 71883730 G A AIFM2 Silent p.F37F 0.63 TCGA-C5-A902-01 10 72289016 72289016 G A PALD1 Missense_Mutation p.D73N 0.13 deleterious(0.01) possibly_damaging(0.777) TCGA-C5-A902-01 10 74890645 74890645 C T NUDT13 Missense_Mutation p.S348F 0.23 deleterious_low_confidence(0.05) benign(0.01) TCGA-C5-A902-01 10 78674731 78674731 G C KCNMA1 Missense_Mutation p.I976M 0.37 tolerated(0.14) possibly_damaging(0.48) TCGA-C5-A902-01 10 89725816 89725816 C T PTEN 3'UTR 0.31 TCGA-C5-A902-01 11 108380329 108380329 C G EXPH5 Missense_Mutation p.D1969H 0.67 deleterious(0) probably_damaging(0.974) TCGA-C5-A902-01 11 113567622 113567622 G A TMPRSS5 Missense_Mutation p.S179F 0.53 tolerated(0.07) benign(0.013) TCGA-C5-A902-01 11 1155155 1155155 C T MUC5AC Missense_Mutation p.R55C 0.65 deleterious(0.01) possibly_damaging(0.577) TCGA-C5-A902-01 11 118768258 118768258 C T BCL9L 3'UTR 0.56 TCGA-C5-A902-01 11 118828865 118828865 C T UPK2 Silent p.I159I 0.80 TCGA-C5-A902-01 11 18723825 18723825 C T TMEM86A 3'UTR 0.67 TCGA-C5-A902-01 11 32635290 32635290 G A CCDC73 Silent p.F858F 0.57 TCGA-C5-A902-01 11 47594010 47594010 C T KBTBD4 3'UTR 0.34 TCGA-C5-A902-01 11 47594285 47594285 C T KBTBD4 3'UTR 0.37 TCGA-C5-A902-01 11 47732059 47732059 C A AGBL2 Missense_Mutation p.Q34H 0.30 tolerated_low_confidence(0.08) benign(0.005) TCGA-C5-A902-01 11 55872857 55872857 C T OR8H2 Silent p.Y113Y 0.09 TCGA-C5-A902-01 11 57097832 57097832 C T SSRP1 Missense_Mutation p.M456I 0.25 deleterious(0.04) benign(0.119) TCGA-C5-A902-01 11 58338176 58338176 C T LPXN Silent p.L13L 0.30 TCGA-C5-A902-01 11 61514445 61514445 G C DAGLA 3'UTR 0.10 TCGA-C5-A902-01 11 62293498 62293498 G C AHNAK Silent p.V2797V 0.44 TCGA-C5-A902-01 11 62294712 62294712 G C AHNAK Missense_Mutation p.L2393V 0.56 benign(0.001) TCGA-C5-A902-01 11 64510833 64510833 G A RASGRP2 Intron 0.36 TCGA-C5-A902-01 11 64900671 64900671 C T SYVN1 Missense_Mutation p.G62D 0.38 tolerated(0.05) possibly_damaging(0.601) TCGA-C5-A902-01 11 65487898 65487898 G A RNASEH2C Intron 0.28 TCGA-C5-A902-01 11 65487936 65487936 G A RNASEH2C Intron 0.40 TCGA-C5-A902-01 11 67071623 67071623 G A SSH3 Missense_Mutation p.R34Q 0.23 tolerated(0.09) possibly_damaging(0.638) TCGA-C5-A902-01 11 67269482 67269482 G A PITPNM1 Missense_Mutation p.S164L 0.31 deleterious(0.02) benign(0.006) TCGA-C5-A902-01 11 68381855 68381855 C T PPP6R3 3'UTR 0.75 TCGA-C5-A902-01 11 68773433 68773433 G A MRGPRF Silent p.I115I 0.74 TCGA-C5-A902-01 11 71164400 71164400 G C NADSYN1 Missense_Mutation p.E20Q 0.45 tolerated(0.12) benign(0.173) TCGA-C5-A902-01 11 93458879 93458879 C G KIAA1731 Missense_Mutation p.F2127L 0.60 tolerated(0.14) possibly_damaging(0.697) TCGA-C5-A902-01 12 102811617 102811617 G A IGF1 Silent p.C189C 0.29 TCGA-C5-A902-01 12 105764732 105764732 C T C12orf75 3'UTR 0.32 TCGA-C5-A902-01 12 105764737 105764737 C T C12orf75 3'UTR 0.38 TCGA-C5-A902-01 12 106457180 106457180 G A NUAK1 3'UTR 0.38 TCGA-C5-A902-01 12 107367094 107367094 G A C12orf23 3'UTR 0.45 TCGA-C5-A902-01 12 111080146 111080146 G A TCTN1 Missense_Mutation p.R428Q 0.33 deleterious(0) probably_damaging(1) TCGA-C5-A902-01 12 123818698 123818698 G C SBNO1 Missense_Mutation p.P271A 0.39 deleterious(0.02) probably_damaging(1) TCGA-C5-A902-01 12 126004123 126004123 G A TMEM132B Silent p.E410E 0.36 TCGA-C5-A902-01 12 132271122 132271122 G A SFSWAP Silent p.R893R 0.42 TCGA-C5-A902-01 12 13241738 13241738 C T GSG1 Intron 0.26 TCGA-C5-A902-01 12 133248825 133248825 C T POLE Silent p.V590V 0.35 TCGA-C5-A902-01 12 133372569 133372569 C T GOLGA3 Missense_Mutation p.A780T 0.46 deleterious(0.01) benign(0.209) TCGA-C5-A902-01 12 133778899 133778900 TT - ZNF268 Frame_Shift_Del p.L210Efs*7 0.23 TCGA-C5-A902-01 12 26818957 26818957 G T ITPR2 Silent p.L479L 0.27 TCGA-C5-A902-01 12 46125006 46125006 G C ARID2 Missense_Mutation p.E65Q 0.46 tolerated(0.25) probably_damaging(0.975) TCGA-C5-A902-01 12 49373317 49373317 C T WNT1 Silent p.L57L 0.37 TCGA-C5-A902-01 12 50746934 50746934 C A FAM186A Silent p.L1227L 0.39 TCGA-C5-A902-01 12 52139696 52139696 G A SCN8A Missense_Mutation p.E670K 0.27 tolerated(0.06) possibly_damaging(0.676) TCGA-C5-A902-01 12 53609563 53609564 CT - RARG Frame_Shift_Del p.S67Hfs*28 0.30 TCGA-C5-A902-01 12 54675236 54675236 G A HNRNPA1 Missense_Mutation p.E28K 0.30 deleterious(0.03) possibly_damaging(0.767) TCGA-C5-A902-01 12 54686808 54686808 G A NFE2 Missense_Mutation p.L158F 0.40 tolerated(0.11) probably_damaging(0.961) TCGA-C5-A902-01 12 54756605 54756605 C T GPR84 Missense_Mutation p.R344K 0.50 tolerated(1) benign(0.001) TCGA-C5-A902-01 12 56078028 56078028 G A METTL7B 3'UTR 0.36 TCGA-C5-A902-01 12 56828003 56828003 G A TIMELESS 5'UTR 0.34 TCGA-C5-A902-01 12 6078555 6078555 G A VWF Silent p.V2517V 0.35 TCGA-C5-A902-01 12 66152129 66152129 C G RPSAP52 RNA 0.25 TCGA-C5-A902-01 12 67699732 67699732 C T CAND1 Silent p.L762L 0.36 TCGA-C5-A902-01 12 7559130 7559130 G T CD163L1 Nonsense_Mutation p.S362* 0.32 TCGA-C5-A902-01 12 7807205 7807205 G C APOBEC1 Missense_Mutation p.L14V 0.37 tolerated(0.09) benign(0.063) TCGA-C5-A902-01 12 81719587 81719587 G C PPFIA2 Missense_Mutation p.Q871E 0.36 tolerated(0.08) possibly_damaging(0.835) TCGA-C5-A902-01 13 21205195 21205195 G C IFT88 Missense_Mutation p.R456T 0.69 deleterious(0.05) benign(0.063) TCGA-C5-A902-01 13 72049945 72049945 G A DACH1 Missense_Mutation p.A638V 0.82 probably_damaging(0.999) TCGA-C5-A902-01 14 106092266 106092266 C T IGHG4 Silent p.L46L 0.13 TCGA-C5-A902-01 14 20215668 20215668 T C OR4Q3 Missense_Mutation p.F28L 0.50 deleterious(0.03) benign(0.008) TCGA-C5-A902-01 14 24626728 24626728 G A RNF31 Splice_Site p.X870_splice 0.39 TCGA-C5-A902-01 14 31828151 31828151 C G HEATR5A Missense_Mutation p.L435F 0.47 deleterious(0.04) possibly_damaging(0.517) TCGA-C5-A902-01 14 44975765 44975765 C T FSCB Missense_Mutation p.M142I 0.28 tolerated(0.06) benign(0.259) TCGA-C5-A902-01 14 50792593 50792593 C G ATP5S 3'UTR 0.35 TCGA-C5-A902-01 14 53248520 53248520 G A GNPNAT1 Silent p.F109F 0.33 TCGA-C5-A902-01 14 60426712 60426712 C A LRRC9 Missense_Mutation p.F353L 0.33 tolerated(0.15) probably_damaging(0.937) TCGA-C5-A902-01 14 64457156 64457156 G C SYNE2 Missense_Mutation p.D781H 0.26 possibly_damaging(0.549) TCGA-C5-A902-01 14 74182417 74182417 G A ELMSAN1 3'UTR 0.35 TCGA-C5-A902-01 14 75287888 75287888 C T YLPM1 Intron 0.37 TCGA-C5-A902-01 14 75514175 75514175 C T MLH3 Silent p.R728R 0.44 TCGA-C5-A902-01 14 76249611 76249611 C G TTLL5 Silent p.L908L 0.33 TCGA-C5-A902-01 14 76249651 76249651 C T TTLL5 Missense_Mutation p.P922S 0.32 tolerated(0.07) benign(0.003) TCGA-C5-A902-01 14 81046756 81046756 C T CEP128 Missense_Mutation p.E940K 0.41 tolerated(1) benign(0.036) TCGA-C5-A902-01 14 88478260 88478260 C T GPR65 3'UTR 0.26 TCGA-C5-A902-01 14 95598904 95598904 G A DICER1 Silent p.I85I 0.30 TCGA-C5-A902-01 15 20649647 20649647 C T HERC2P3 RNA 0.20 TCGA-C5-A902-01 15 25963400 25963400 G A ATP10A Missense_Mutation p.R504C 0.33 tolerated(0.06) probably_damaging(0.953) TCGA-C5-A902-01 15 31669295 31669295 C T KLF13 3'UTR 0.50 TCGA-C5-A902-01 15 34649701 34649701 G A NUTM1 3'UTR 0.40 TCGA-C5-A902-01 15 44102087 44102087 C T MFAP1 Missense_Mutation p.E305K 0.44 deleterious(0.01) probably_damaging(0.95) TCGA-C5-A902-01 15 44707893 44707893 G C CASC4 3'UTR 0.62 TCGA-C5-A902-01 15 54305127 54305127 G A UNC13C Silent p.L9L 0.39 TCGA-C5-A902-01 15 54305470 54305470 G C UNC13C Missense_Mutation p.E124Q 0.31 deleterious_low_confidence(0) benign(0.383) TCGA-C5-A902-01 15 65477415 65477415 C G CLPX Missense_Mutation p.R26T 0.33 deleterious_low_confidence(0.05) benign(0.051) TCGA-C5-A902-01 15 74425733 74425733 C T ISLR2 Missense_Mutation p.S213L 0.41 tolerated(0.26) benign(0.148) TCGA-C5-A902-01 15 75977834 75977834 G A CSPG4 Missense_Mutation p.S1333L 0.44 deleterious(0.04) benign(0.075) TCGA-C5-A902-01 15 78584983 78584983 C G WDR61 Missense_Mutation p.Q98H 0.38 tolerated(0.39) benign(0.271) TCGA-C5-A902-01 15 86122585 86122585 C G AKAP13 Missense_Mutation p.S429C 0.39 deleterious(0) possibly_damaging(0.794) TCGA-C5-A902-01 15 86122588 86122588 C T AKAP13 Missense_Mutation p.S430F 0.29 deleterious(0.03) possibly_damaging(0.507) TCGA-C5-A902-01 15 91456118 91456118 C A MAN2A2 Silent p.P827P 0.07 TCGA-C5-A902-01 15 93162090 93162090 G A FAM174B 3'UTR 0.46 TCGA-C5-A902-01 16 1556304 1556304 C T TELO2 Silent p.F700F 0.38 TCGA-C5-A902-01 16 15797951 15797951 G C MYH11 Missense_Mutation p.S1946C 0.31 benign(0.086) TCGA-C5-A902-01 16 2282468 2282468 C G E4F1 Silent p.L207L 0.39 TCGA-C5-A902-01 16 2514403 2514403 G T C16orf59 Intron 0.62 TCGA-C5-A902-01 16 27374152 27374152 C T IL4R Silent p.G493G 0.30 TCGA-C5-A902-01 16 28507851 28507851 G A APOBR Missense_Mutation p.E497K 0.38 deleterious(0.04) possibly_damaging(0.486) TCGA-C5-A902-01 16 31072358 31072358 C T ZNF668 3'UTR 0.43 TCGA-C5-A902-01 16 57264651 57264651 G C RSPRY1 Missense_Mutation p.L434F 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-C5-A902-01 16 57954376 57954376 C T CNGB1 Silent p.V572V 0.62 TCGA-C5-A902-01 16 69143910 69143910 C G HAS3 Silent p.L204L 0.57 TCGA-C5-A902-01 16 71660328 71660328 G A MARVELD3 Missense_Mutation p.D66N 0.48 tolerated(0.35) unknown(0) TCGA-C5-A902-01 16 81228628 81228628 T C PKD1L2 Missense_Mutation p.T44A 0.38 deleterious(0) probably_damaging(0.922) TCGA-C5-A902-01 16 88014647 88014647 T C BANP Silent p.L26L 0.14 TCGA-C5-A902-01 16 929647 929647 C T LMF1 Missense_Mutation p.E274K 0.35 deleterious(0) probably_damaging(0.997) TCGA-C5-A902-01 17 11593068 11593068 G T DNAH9 Missense_Mutation p.G1310V 0.48 benign(0.009) TCGA-C5-A902-01 17 28011635 28011635 C A SSH2 Missense_Mutation p.R115I 0.43 deleterious(0.01) probably_damaging(0.966) TCGA-C5-A902-01 17 29556424 29556424 C G NF1 Missense_Mutation p.P931A 0.36 deleterious(0.04) benign(0.06) TCGA-C5-A902-01 17 29556929 29556929 C A NF1 Missense_Mutation p.T976N 0.35 tolerated(0.11) benign(0.033) TCGA-C5-A902-01 17 33953832 33953832 G C AP2B1 Silent p.L303L 0.35 TCGA-C5-A902-01 17 34068900 34068900 C T RASL10B 3'UTR 0.31 TCGA-C5-A902-01 17 3539381 3539381 C G SHPK Missense_Mutation p.E45Q 0.34 tolerated(0.44) benign(0.077) TCGA-C5-A902-01 17 36482641 36482641 G A GPR179 Missense_Mutation p.P2271S 0.33 tolerated_low_confidence(0.14) benign(0.018) TCGA-C5-A902-01 17 37627822 37627822 C T CDK12 Silent p.S579S 0.37 TCGA-C5-A902-01 17 37627889 37627889 C T CDK12 Nonsense_Mutation p.Q602* 0.41 TCGA-C5-A902-01 17 38337872 38337872 C T RAPGEFL1 5'UTR 0.19 TCGA-C5-A902-01 17 38457843 38457843 G A CDC6 Missense_Mutation p.E526K 0.25 deleterious(0) probably_damaging(0.936) TCGA-C5-A902-01 17 39296110 39296110 C T KRTAP4-6 3'UTR 0.32 TCGA-C5-A902-01 17 39579924 39579924 G C KRT37 Intron 0.41 TCGA-C5-A902-01 17 39658696 39658696 G A KRT13 Silent p.L392L 0.38 TCGA-C5-A902-01 17 40729612 40729612 C T PSMC3IP Intron 0.31 TCGA-C5-A902-01 17 42226390 42226390 C T C17orf53 Missense_Mutation p.H407Y 0.45 deleterious(0.01) possibly_damaging(0.731) TCGA-C5-A902-01 17 42475686 42475686 C T GPATCH8 Silent p.L1253L 0.33 TCGA-C5-A902-01 17 42636772 42636772 G T FZD2 3'UTR 0.29 TCGA-C5-A902-01 17 48431055 48431055 C T XYLT2 Missense_Mutation p.S67L 0.44 tolerated_low_confidence(0.65) possibly_damaging(0.505) TCGA-C5-A902-01 17 5064871 5064871 G A USP6 Silent p.Q959Q 0.38 TCGA-C5-A902-01 17 54893368 54893368 C T C17orf67 5'UTR 0.20 TCGA-C5-A902-01 17 57094719 57094719 C T TRIM37 Missense_Mutation p.R775Q 0.54 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-C5-A902-01 17 62796568 62796568 C G PLEKHM1P RNA 0.27 TCGA-C5-A902-01 17 63685267 63685267 C T CEP112 Missense_Mutation p.E893K 0.45 deleterious(0) probably_damaging(0.995) TCGA-C5-A902-01 17 673324 673324 G A GLOD4 Missense_Mutation p.P235L 0.23 deleterious(0) probably_damaging(0.987) TCGA-C5-A902-01 17 7094110 7094110 C T DLG4 Missense_Mutation p.E741K 0.38 deleterious(0) probably_damaging(0.93) TCGA-C5-A902-01 17 71258021 71258021 C T CPSF4L 5'Flank 0.19 TCGA-C5-A902-01 17 76506471 76506471 C T DNAH17 Missense_Mutation p.E1407K 0.37 probably_damaging(0.999) TCGA-C5-A902-01 17 79845719 79845719 C A ALYREF 3'Flank 0.53 TCGA-C5-A902-01 17 79918527 79918527 C T NOTUM Missense_Mutation p.E87K 0.26 tolerated(0.34) benign(0.131) TCGA-C5-A902-01 17 80197093 80197093 C T SLC16A3 3'UTR 0.21 TCGA-C5-A902-01 17 8701857 8701857 C T MFSD6L Silent p.L194L 0.44 TCGA-C5-A902-01 18 10682260 10682260 C T PIEZO2 Silent p.K2396K 0.42 TCGA-C5-A902-01 18 13069119 13069119 C T CEP192 Missense_Mutation p.S1665L 0.32 deleterious(0.03) benign(0.379) TCGA-C5-A902-01 18 28742525 28742525 G T DSC1 Silent p.I11I 0.29 TCGA-C5-A902-01 18 29793108 29793108 C T MEP1B Missense_Mutation p.H389Y 0.27 tolerated(0.15) benign(0.03) TCGA-C5-A902-01 18 56203859 56203859 G C ALPK2 Nonsense_Mutation p.S1187* 0.32 TCGA-C5-A902-01 18 56648828 56648829 AG - ZNF532 Frame_Shift_Del p.E1131Nfs*6 0.21 TCGA-C5-A902-01 18 61570222 61570222 C T SERPINB2 Nonsense_Mutation p.Q311* 0.25 TCGA-C5-A902-01 18 67715236 67715236 G C RTTN Missense_Mutation p.L1838V 0.33 tolerated(0.86) benign(0.001) TCGA-C5-A902-01 19 10401786 10401786 C G ICAM5 Missense_Mutation p.R41G 0.26 tolerated(0.06) possibly_damaging(0.823) TCGA-C5-A902-01 19 10690449 10690449 G A AP1M2 Silent p.I253I 0.26 TCGA-C5-A902-01 19 12223507 12223507 G C ZNF788 Missense_Mutation p.R382T 0.68 deleterious(0.02) benign(0) TCGA-C5-A902-01 19 13869691 13869691 G A CCDC130 Missense_Mutation p.M89I 0.51 deleterious(0) probably_damaging(0.984) TCGA-C5-A902-01 19 1800295 1800295 G A ATP8B3 Silent p.L436L 0.62 TCGA-C5-A902-01 19 18378375 18378375 C T KIAA1683 Intron 0.57 TCGA-C5-A902-01 19 2252602 2252602 C T JSRP1 Missense_Mutation p.R241K 0.59 tolerated(1) possibly_damaging(0.567) TCGA-C5-A902-01 19 22574323 22574323 T C ZNF98 Missense_Mutation p.K572E 0.38 deleterious(0.02) benign(0.323) TCGA-C5-A902-01 19 23159755 23159755 T A ZNF728 Missense_Mutation p.K128N 0.50 tolerated(0.24) benign(0.051) TCGA-C5-A902-01 19 3578667 3578667 C G HMG20B 3'UTR 0.53 TCGA-C5-A902-01 19 36223466 36223466 G C KMT2B Missense_Mutation p.E2006Q 0.32 probably_damaging(0.932) TCGA-C5-A902-01 19 38056462 38056462 G C ZNF571 Missense_Mutation p.L290V 0.52 tolerated(0.5) benign(0.002) TCGA-C5-A902-01 19 45997544 45997544 C T RTN2 Missense_Mutation p.E232K 0.24 deleterious_low_confidence(0.01) benign(0.013) TCGA-C5-A902-01 19 46280836 46280836 G A DMPK Silent p.L309L 0.33 TCGA-C5-A902-01 19 46999029 46999029 C G PNMAL2 5'UTR 0.38 TCGA-C5-A902-01 19 48219821 48219821 C T EHD2 5'UTR 0.32 TCGA-C5-A902-01 19 49000725 49000725 C T LMTK3 Missense_Mutation p.E1230K 0.19 unknown(0) TCGA-C5-A902-01 19 49244578 49244578 C T IZUMO1 Silent p.L304L 0.50 TCGA-C5-A902-01 19 49334986 49334986 G C HSD17B14 Missense_Mutation p.S103C 0.33 deleterious(0) probably_damaging(0.947) TCGA-C5-A902-01 19 50363274 50363274 C T PTOV1 Missense_Mutation p.S358L 0.40 tolerated(0.27) benign(0.012) TCGA-C5-A902-01 19 50926991 50926991 G A SPIB Missense_Mutation p.E157K 0.28 tolerated(0.32) benign(0.295) TCGA-C5-A902-01 19 51391490 51391490 G C KLKP1 RNA 0.37 TCGA-C5-A902-01 19 54659204 54659204 G A LENG1 3'UTR 0.43 TCGA-C5-A902-01 19 54946807 54946807 G C TTYH1 Missense_Mutation p.G404A 0.40 tolerated(0.5) possibly_damaging(0.905) TCGA-C5-A902-01 19 55344207 55344207 C T KIR3DL1 3'Flank 0.29 TCGA-C5-A902-01 19 55687172 55687172 G A SYT5 Missense_Mutation p.R149W 0.31 deleterious(0) possibly_damaging(0.773) TCGA-C5-A902-01 19 57133576 57133576 C A ZNF71 Missense_Mutation p.F307L 0.38 deleterious(0) probably_damaging(0.968) TCGA-C5-A902-01 19 58220520 58220520 C G ZNF154 5'UTR 0.38 TCGA-C5-A902-01 19 630069 630069 T C POLRMT Missense_Mutation p.D98G 0.10 tolerated(0.41) benign(0) TCGA-C5-A902-01 19 7533770 7533770 G A ARHGEF18 Silent p.V992V 0.67 TCGA-C5-A902-01 19 9057945 9057945 G A MUC16 Missense_Mutation p.S9834L 0.22 unknown(0) TCGA-C5-A902-01 19 9213389 9213389 G C OR7G2 Missense_Mutation p.F198L 0.49 deleterious(0.02) benign(0.105) TCGA-C5-A902-01 1 114495461 114495461 G C HIPK1 Missense_Mutation p.E384Q 0.37 deleterious(0) probably_damaging(1) TCGA-C5-A902-01 1 115489893 115489893 T A SYCP1 Silent p.A758A 0.45 TCGA-C5-A902-01 1 117641521 117641521 C T TTF2 Silent p.V1112V 0.32 TCGA-C5-A902-01 1 1479355 1479355 C G SSU72 Missense_Mutation p.R126T 0.36 deleterious(0.01) probably_damaging(0.983) TCGA-C5-A902-01 1 155239322 155239322 C T CLK2 Missense_Mutation p.R119K 0.44 tolerated(0.44) benign(0.004) TCGA-C5-A902-01 1 155255097 155255097 C T HCN3 Missense_Mutation p.R411C 0.51 deleterious(0) possibly_damaging(0.889) TCGA-C5-A902-01 1 156623112 156623112 C T BCAN Intron 0.21 TCGA-C5-A902-01 1 160000480 160000480 G A PIGM Silent p.V350V 0.47 TCGA-C5-A902-01 1 160183256 160183256 C T PEA15 Missense_Mutation p.P125S 0.15 tolerated(0.09) benign(0.005) TCGA-C5-A902-01 1 161163072 161163072 G A ADAMTS4 Silent p.A614A 0.30 TCGA-C5-A902-01 1 162313705 162313705 G C NOS1AP Missense_Mutation p.Q178H 0.31 deleterious(0.01) possibly_damaging(0.827) TCGA-C5-A902-01 1 163045861 163045861 C T RGS4 3'UTR 0.33 TCGA-C5-A902-01 1 16383744 16383744 T C CLCNKB 3'UTR 0.08 TCGA-C5-A902-01 1 16910099 16910099 C T NBPF1 Missense_Mutation p.E361K 0.11 deleterious(0.03) possibly_damaging(0.729) TCGA-C5-A902-01 1 1696816 1696816 C G NADK Missense_Mutation p.M10I 0.32 tolerated_low_confidence(0.14) benign(0) TCGA-C5-A902-01 1 17084077 17084077 C T MST1L RNA 0.07 TCGA-C5-A902-01 1 171130512 171130512 G A FMO6P 3'UTR 0.24 TCGA-C5-A902-01 1 171482181 171482181 C T PRRC2C Missense_Mutation p.R52W 0.08 unknown(0) TCGA-C5-A902-01 1 173806162 173806162 C G DARS2 Missense_Mutation p.L250V 0.32 deleterious(0) probably_damaging(1) TCGA-C5-A902-01 1 176934347 176934347 C T ASTN1 Missense_Mutation p.R517Q 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-C5-A902-01 1 17735625 17735625 C T RCC2 Silent p.K510K 0.31 TCGA-C5-A902-01 1 186359842 186359842 G C C1orf27 Splice_Site p.X159_splice 0.45 TCGA-C5-A902-01 1 19183907 19183907 C T TAS1R2 Missense_Mutation p.R134H 0.43 tolerated(0.09) benign(0.037) TCGA-C5-A902-01 1 207131938 207131938 C T FCAMR Missense_Mutation p.E553K 0.35 tolerated(0.35) benign(0.055) TCGA-C5-A902-01 1 212273981 212273981 G A DTL Missense_Mutation p.R550K 0.27 tolerated(0.12) benign(0.076) TCGA-C5-A902-01 1 223900354 223900354 C G CAPN2 Missense_Mutation p.I4M 0.31 tolerated(0.75) benign(0.017) TCGA-C5-A902-01 1 223900477 223900477 C T CAPN2 Silent p.L45L 0.45 TCGA-C5-A902-01 1 236192847 236192847 C T NID1 Intron 0.33 TCGA-C5-A902-01 1 247978441 247978441 G C OR14A16 Silent p.L197L 0.38 TCGA-C5-A902-01 1 248551274 248551274 G A OR2T6 Missense_Mutation p.R122H 0.62 deleterious(0.04) benign(0.028) TCGA-C5-A902-01 1 248637572 248637572 G T OR2T3 Missense_Mutation p.R307S 0.26 tolerated(0.08) benign(0.013) TCGA-C5-A902-01 1 28285276 28285276 C T SMPDL3B Missense_Mutation p.S432F 0.26 tolerated(0.06) benign(0.003) TCGA-C5-A902-01 1 28293301 28293301 C G XKR8 Missense_Mutation p.L260V 0.28 deleterious(0) probably_damaging(0.951) TCGA-C5-A902-01 1 28800635 28800635 C T PHACTR4 Missense_Mutation p.L475F 0.35 deleterious(0) probably_damaging(1) TCGA-C5-A902-01 1 28802691 28802691 C T PHACTR4 Silent p.V508V 0.39 TCGA-C5-A902-01 1 31842289 31842289 G C FABP3 Missense_Mutation p.I63M 0.40 deleterious(0.02) probably_damaging(0.944) TCGA-C5-A902-01 1 32479938 32479938 C T KHDRBS1 Silent p.L114L 0.58 TCGA-C5-A902-01 1 36358814 36358814 G A AGO1 Silent p.Q149Q 0.50 TCGA-C5-A902-01 1 3700609 3700609 C T LRRC47 Missense_Mutation p.E421K 0.36 deleterious(0) probably_damaging(0.952) TCGA-C5-A902-01 1 39340398 39340398 G A GJA9 Missense_Mutation p.S458L 0.42 tolerated(0.33) benign(0.002) TCGA-C5-A902-01 1 46660228 46660228 C T POMGNT1 Missense_Mutation p.E250K 0.36 benign(0.03) TCGA-C5-A902-01 1 47402372 47402372 A G CYP4A11 Silent p.Y158Y 0.11 TCGA-C5-A902-01 1 55207222 55207222 C T TTC4 3'UTR 0.25 TCGA-C5-A902-01 1 6387381 6387381 G A ACOT7 Silent p.I211I 0.52 TCGA-C5-A902-01 1 85417961 85417961 G A MCOLN2 Missense_Mutation p.R238C 0.40 deleterious(0.01) probably_damaging(0.953) TCGA-C5-A902-01 1 86196005 86196005 G C COL24A1 3'UTR 0.37 TCGA-C5-A902-01 1 93618750 93618750 G A TMED5 3'UTR 0.41 TCGA-C5-A902-01 1 981382 981382 G A AGRN Missense_Mutation p.E907K 0.28 tolerated(0.18) benign(0.292) TCGA-C5-A902-01 20 13756763 13756763 C A ESF1 Missense_Mutation p.R264I 0.69 tolerated_low_confidence(0.05) benign(0.216) TCGA-C5-A902-01 20 18142761 18142761 C T CSRP2BP Missense_Mutation p.S327F 0.56 deleterious(0) possibly_damaging(0.906) TCGA-C5-A902-01 20 18142769 18142769 C G CSRP2BP Missense_Mutation p.P330A 0.54 tolerated(0.11) possibly_damaging(0.804) TCGA-C5-A902-01 20 18142804 18142804 C T CSRP2BP Silent p.A341A 0.59 TCGA-C5-A902-01 20 18142880 18142880 C G CSRP2BP Missense_Mutation p.H367D 0.65 tolerated(0.19) possibly_damaging(0.786) TCGA-C5-A902-01 20 18143049 18143049 C T CSRP2BP Silent p.V377V 0.63 TCGA-C5-A902-01 20 18143260 18143260 C T CSRP2BP Nonsense_Mutation p.Q448* 0.57 TCGA-C5-A902-01 20 18143397 18143397 C G CSRP2BP Silent p.R493R 0.62 TCGA-C5-A902-01 20 18143560 18143560 C G CSRP2BP Missense_Mutation p.Q548E 0.55 tolerated(0.23) benign(0.028) TCGA-C5-A902-01 20 20512334 20512334 C T RALGAPA2 Silent p.L1193L 0.21 TCGA-C5-A902-01 20 20586007 20586007 C T RALGAPA2 Missense_Mutation p.R617Q 0.33 deleterious(0.01) possibly_damaging(0.892) TCGA-C5-A902-01 20 30960097 30960097 G C ASXL1 Intron 0.21 TCGA-C5-A902-01 20 32399279 32399279 C T CHMP4B Missense_Mutation p.S2L 0.54 deleterious(0) benign(0.194) TCGA-C5-A902-01 20 32441515 32441515 C T CHMP4B 3'UTR 0.58 TCGA-C5-A902-01 20 36962835 36962835 G A BPI Missense_Mutation p.E430K 0.50 tolerated(0.09) benign(0.037) TCGA-C5-A902-01 20 40120426 40120426 C G CHD6 Missense_Mutation p.E450Q 0.58 deleterious(0) possibly_damaging(0.544) TCGA-C5-A902-01 20 40701690 40701690 C A PTPRT 3'UTR 0.50 TCGA-C5-A902-01 20 41419961 41419961 C T PTPRT Silent p.L120L 0.61 TCGA-C5-A902-01 20 44166121 44166121 G A EPPIN-WFDC6 3'UTR 0.19 TCGA-C5-A902-01 20 44681718 44681718 G A SLC12A5 Missense_Mutation p.D857N 0.18 deleterious(0) possibly_damaging(0.83) TCGA-C5-A902-01 20 54824517 54824517 C G MC3R Silent p.L206L 0.25 TCGA-C5-A902-01 20 60897136 60897136 G T LAMA5 Nonsense_Mutation p.C2145* 0.26 TCGA-C5-A902-01 21 15710261 15710261 G A ABCC13 RNA 0.50 TCGA-C5-A902-01 21 16340733 16340733 G A NRIP1 5'UTR 0.33 TCGA-C5-A902-01 21 28338182 28338182 C A ADAMTS5 Nonsense_Mutation p.E177* 0.42 TCGA-C5-A902-01 21 43833171 43833171 G C UBASH3A Silent p.L131L 0.32 TCGA-C5-A902-01 21 45758215 45758215 C G C21orf2 Intron 0.24 TCGA-C5-A902-01 21 46310011 46310011 G A ITGB2 Silent p.V513V 0.27 TCGA-C5-A902-01 21 46876104 46876104 C T COL18A1 Intron 0.35 TCGA-C5-A902-01 21 47856956 47856956 G A PCNT Missense_Mutation p.E3021K 0.35 possibly_damaging(0.636) TCGA-C5-A902-01 22 21385937 21385937 G A SLC7A4 Silent p.L55L 0.33 TCGA-C5-A902-01 22 23248641 23248641 C A IGLC3 Missense_Mutation p.A44E 0.20 benign(0.089) TCGA-C5-A902-01 22 24621549 24621549 C T GGT5 Missense_Mutation p.R434Q 0.42 deleterious(0) possibly_damaging(0.658) TCGA-C5-A902-01 22 26100106 26100106 G A ADRBK2 Missense_Mutation p.E420K 0.41 deleterious(0.01) benign(0.33) TCGA-C5-A902-01 22 38245609 38245609 C T EIF3L Intron 0.56 TCGA-C5-A902-01 22 38333130 38333130 G A MICALL1 Silent p.L784L 0.36 TCGA-C5-A902-01 22 41920847 41920847 C T ACO2 Intron 0.18 TCGA-C5-A902-01 22 44031021 44031021 C T EFCAB6 Missense_Mutation p.E687K 0.21 tolerated(0.13) possibly_damaging(0.804) TCGA-C5-A902-01 22 50941896 50941896 C T LMF2 Missense_Mutation p.G683E 0.19 tolerated(1) benign(0.221) TCGA-C5-A902-01 2 107040153 107040153 C T RGPD3 Missense_Mutation p.E1424K 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-C5-A902-01 2 109370302 109370302 G C RANBP2 Missense_Mutation p.D693H 0.29 deleterious(0) benign(0.425) TCGA-C5-A902-01 2 128331554 128331554 G A MYO7B Missense_Mutation p.D218N 0.31 deleterious(0.04) probably_damaging(0.99) TCGA-C5-A902-01 2 128367435 128367435 C A MYO7B Silent p.V1012V 0.28 TCGA-C5-A902-01 2 133430216 133430216 C T NCKAP5 3'UTR 0.43 TCGA-C5-A902-01 2 165551974 165551974 G T COBLL1 Nonsense_Mutation p.S681* 0.36 TCGA-C5-A902-01 2 166846261 166846261 G A SCN1A 3'UTR 0.26 TCGA-C5-A902-01 2 170666799 170666799 C G SSB Missense_Mutation p.L226V 0.31 tolerated(0.09) benign(0.022) TCGA-C5-A902-01 2 174820494 174820494 T G SP3 Missense_Mutation p.Q249P 0.09 tolerated(0.07) possibly_damaging(0.888) TCGA-C5-A902-01 2 174820501 174820501 G C SP3 Missense_Mutation p.P247A 0.09 tolerated(0.49) benign(0.008) TCGA-C5-A902-01 2 179411540 179411540 C T TTN Missense_Mutation p.V31539M 0.56 TCGA-C5-A902-01 2 179442396 179442396 C G TTN Missense_Mutation p.K22919N 0.31 TCGA-C5-A902-01 2 179701773 179701773 C G CCDC141 Missense_Mutation p.E1391D 0.41 tolerated(0.07) benign(0.159) TCGA-C5-A902-01 2 180307214 180307214 C T ZNF385B 3'UTR 0.43 TCGA-C5-A902-01 2 186671647 186671647 G C FSIP2 Missense_Mutation p.E5961Q 0.33 benign(0.058) TCGA-C5-A902-01 2 201735925 201735925 C A PPIL3 3'UTR 0.73 TCGA-C5-A902-01 2 204602237 204602237 C G CD28 3'UTR 0.48 TCGA-C5-A902-01 2 216211566 216211566 C T ATIC Missense_Mutation p.H469Y 0.27 deleterious(0.03) benign(0.157) TCGA-C5-A902-01 2 219677360 219677360 C T CYP27A1 Silent p.I244I 0.60 TCGA-C5-A902-01 2 220288497 220288497 A G DES Splice_Site p.X415_splice 0.32 TCGA-C5-A902-01 2 234204105 234204105 G T ATG16L1 3'UTR 0.31 TCGA-C5-A902-01 2 46808503 46808505 TGT - RHOQ 3'UTR 0.10 TCGA-C5-A902-01 2 55463876 55463876 C T MTIF2 Missense_Mutation p.E698K 0.31 tolerated(0.3) benign(0.011) TCGA-C5-A902-01 2 63175478 63175478 G C EHBP1 Silent p.L534L 0.44 TCGA-C5-A902-01 2 63217952 63217952 G C EHBP1 Missense_Mutation p.E975Q 0.43 deleterious(0.04) benign(0.009) TCGA-C5-A902-01 2 64863458 64863458 G A SERTAD2 Missense_Mutation p.S183F 0.35 deleterious(0.02) possibly_damaging(0.564) TCGA-C5-A902-01 2 74332867 74332867 C T TET3 3'UTR 0.29 TCGA-C5-A902-01 2 74754372 74754372 C T AUP1 Intron 0.23 TCGA-C5-A902-01 2 86426622 86426622 C G MRPL35 Silent p.A3A 0.25 TCGA-C5-A902-01 2 87085256 87085256 T C CD8B Silent p.E109E 0.09 TCGA-C5-A902-01 3 10140702 10140702 G C FANCD2 3'UTR 0.31 TCGA-C5-A902-01 3 112184866 112184866 G C BTLA 3'UTR 0.32 TCGA-C5-A902-01 3 119445093 119445093 C G MAATS1 Missense_Mutation p.S253C 0.27 deleterious(0) possibly_damaging(0.547) TCGA-C5-A902-01 3 120407223 120407223 G C RABL3 3'UTR 0.42 TCGA-C5-A902-01 3 121414702 121414702 G A GOLGB1 Silent p.L1556L 0.44 TCGA-C5-A902-01 3 122287484 122287484 G C DTX3L Missense_Mutation p.R183T 0.43 deleterious(0.04) benign(0.002) TCGA-C5-A902-01 3 122288321 122288321 G C DTX3L Missense_Mutation p.R462T 0.25 deleterious(0.04) benign(0.033) TCGA-C5-A902-01 3 130398284 130398284 G A PIK3R4 Nonsense_Mutation p.R1318* 0.29 TCGA-C5-A902-01 3 130732914 130732914 G C ASTE1 Missense_Mutation p.S676C 0.53 tolerated_low_confidence(0.09) benign(0.003) TCGA-C5-A902-01 3 15686702 15686702 C T BTD Missense_Mutation p.H447Y 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A902-01 3 157154715 157154715 C T PTX3 5'UTR 0.55 TCGA-C5-A902-01 3 157920869 157920869 C T RSRC1 Missense_Mutation p.S110L 0.49 deleterious_low_confidence(0) unknown(0) TCGA-C5-A902-01 3 169539937 169539937 C T LRRIQ4 Silent p.L76L 0.42 TCGA-C5-A902-01 3 181431523 181431523 G C SOX2 3'UTR 0.14 TCGA-C5-A902-01 3 184003365 184003365 C G ECE2 Silent p.L534L 0.46 TCGA-C5-A902-01 3 184429285 184429285 C G MAGEF1 Missense_Mutation p.D109H 0.29 deleterious(0) probably_damaging(0.975) TCGA-C5-A902-01 3 184429309 184429309 C G MAGEF1 Missense_Mutation p.E101Q 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-C5-A902-01 3 189838076 189838076 C G LEPREL1 Missense_Mutation p.V149L 0.40 tolerated(0.15) benign(0.001) TCGA-C5-A902-01 3 190573557 190573557 C T GMNC Missense_Mutation p.E178K 0.25 tolerated(0.07) benign(0.144) TCGA-C5-A902-01 3 191860097 191860097 G C FGF12 3'Flank 0.26 TCGA-C5-A902-01 3 195392944 195392944 G A SDHAP2 RNA 0.10 TCGA-C5-A902-01 3 196083330 196083330 G A UBXN7 3'UTR 0.44 TCGA-C5-A902-01 3 196083336 196083336 G A UBXN7 3'UTR 0.47 TCGA-C5-A902-01 3 196083661 196083661 G A UBXN7 Silent p.L455L 0.51 TCGA-C5-A902-01 3 197770287 197770287 C G LMLN 3'Flank 0.37 TCGA-C5-A902-01 3 20164180 20164180 G C KAT2B Missense_Mutation p.D433H 0.48 deleterious(0.03) benign(0.005) TCGA-C5-A902-01 3 4842155 4842155 C A ITPR1 Silent p.L2311L 0.46 TCGA-C5-A902-01 3 53124077 53124077 G A RFT1 3'UTR 0.47 TCGA-C5-A902-01 3 57343198 57343198 C G DNAH12 Missense_Mutation p.E443Q 0.60 deleterious(0) probably_damaging(1) TCGA-C5-A902-01 3 9540480 9540480 C G LHFPL4 3'Flank 0.53 TCGA-C5-A902-01 3 96945167 96945167 C G EPHA6 Missense_Mutation p.P392A 0.30 tolerated(0.38) benign(0.341) TCGA-C5-A902-01 4 118006406 118006406 G A TRAM1L1 Silent p.I48I 0.33 TCGA-C5-A902-01 4 135122085 135122085 G A PABPC4L Silent p.F88F 0.40 TCGA-C5-A902-01 4 148457153 148457153 G C EDNRA Missense_Mutation p.R291T 0.44 deleterious(0.01) probably_damaging(0.941) TCGA-C5-A902-01 4 154624952 154624952 C T TLR2 Missense_Mutation p.S298F 0.35 tolerated(0.06) benign(0.125) TCGA-C5-A902-01 4 155410891 155410891 G A DCHS2 Silent p.F539F 0.25 TCGA-C5-A902-01 4 156268991 156268991 C T MAP9 Missense_Mutation p.E630K 0.40 deleterious(0.03) possibly_damaging(0.702) TCGA-C5-A902-01 4 170641795 170641795 G A CLCN3 3'Flank 0.35 TCGA-C5-A902-01 4 184238741 184238741 G C WWC2 3'UTR 0.18 TCGA-C5-A902-01 4 1980447 1980447 C T WHSC1 Silent p.F1303F 0.38 TCGA-C5-A902-01 4 2178058 2178058 G C POLN Missense_Mutation p.Q395E 0.35 deleterious(0.02) benign(0.22) TCGA-C5-A902-01 4 4301661 4301661 G A ZBTB49 5'UTR 0.30 TCGA-C5-A902-01 4 499714 499714 G A PIGG Missense_Mutation p.E190K 0.40 deleterious(0.02) possibly_damaging(0.654) TCGA-C5-A902-01 4 62362961 62362961 C T LPHN3 5'UTR 0.26 TCGA-C5-A902-01 4 70461971 70461971 C T UGT2A1 Silent p.Q331Q 0.41 TCGA-C5-A902-01 4 71510002 71510002 G C ENAM Missense_Mutation p.R953S 0.21 deleterious(0) possibly_damaging(0.897) TCGA-C5-A902-01 4 76788517 76788517 G A PPEF2 Missense_Mutation p.H569Y 0.41 deleterious(0.04) benign(0.282) TCGA-C5-A902-01 4 81188056 81188056 C T FGF5 Silent p.L26L 0.45 TCGA-C5-A902-01 4 91736936 91736936 G A CCSER1 Silent p.S678S 0.37 TCGA-C5-A902-01 4 94750736 94750736 G A ATOH1 Missense_Mutation p.G220E 0.35 tolerated(0.08) benign(0.029) TCGA-C5-A902-01 5 108523139 108523139 C T FER Missense_Mutation p.R778W 0.37 deleterious(0) possibly_damaging(0.505) TCGA-C5-A902-01 5 112203303 112203303 G A SRP19 3'UTR 0.30 TCGA-C5-A902-01 5 115782300 115782300 C A SEMA6A 3'UTR 0.45 TCGA-C5-A902-01 5 126753374 126753374 C T MEGF10 Missense_Mutation p.S392L 0.46 deleterious(0) benign(0.026) TCGA-C5-A902-01 5 1293425 1293425 C T TERT Intron 0.50 TCGA-C5-A902-01 5 131930621 131930621 G T RAD50 Missense_Mutation p.K618N 0.44 deleterious(0) probably_damaging(0.995) TCGA-C5-A902-01 5 131930625 131930625 G T RAD50 Nonsense_Mutation p.E620* 0.41 TCGA-C5-A902-01 5 132151148 132151148 G A SOWAHA 3'UTR 0.29 TCGA-C5-A902-01 5 134910341 134910341 G C CXCL14 Missense_Mutation p.Q81E 0.39 deleterious(0.01) possibly_damaging(0.523) TCGA-C5-A902-01 5 140432439 140432439 C T PCDHB1 Nonsense_Mutation p.R462* 0.39 TCGA-C5-A902-01 5 140793127 140793127 G A PCDHGA10 Missense_Mutation p.D129N 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-C5-A902-01 5 140793511 140793511 G A PCDHGA10 Missense_Mutation p.E257K 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-C5-A902-01 5 140794480 140794480 G A PCDHGA10 Missense_Mutation p.E580K 0.41 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-C5-A902-01 5 147889584 147889584 C G HTR4 Missense_Mutation p.E171Q 0.32 tolerated(0.27) benign(0.117) TCGA-C5-A902-01 5 148407638 148407638 C T SH3TC2 Missense_Mutation p.E553K 0.56 deleterious(0) probably_damaging(0.999) TCGA-C5-A902-01 5 150666813 150666813 G A SLC36A3 Silent p.I275I 0.40 TCGA-C5-A902-01 5 158705296 158705296 G A UBLCP1 Silent p.K245K 0.33 TCGA-C5-A902-01 5 17276720 17276720 C T BASP1 3'UTR 0.50 TCGA-C5-A902-01 5 176011647 176011647 G A CDHR2 Missense_Mutation p.E789K 0.36 tolerated(0.64) benign(0.008) TCGA-C5-A902-01 5 180335833 180335833 G C BTNL8 Silent p.L99L 0.25 TCGA-C5-A902-01 5 180376959 180376959 G C BTNL8 Silent p.L306L 0.26 TCGA-C5-A902-01 5 41939692 41939692 C A FBXO4 Missense_Mutation p.L350M 0.50 tolerated(0.07) probably_damaging(0.999) TCGA-C5-A902-01 5 57791753 57791753 C A GAPT 3'UTR 0.29 TCGA-C5-A902-01 5 57792171 57792171 C T GAPT 3'UTR 0.50 TCGA-C5-A902-01 5 65440249 65440249 C T SREK1 Silent p.L15L 0.40 TCGA-C5-A902-01 5 70751497 70751497 C T BDP1 5'UTR 0.36 TCGA-C5-A902-01 5 90072391 90072391 C T GPR98 Silent p.I4175I 0.31 TCGA-C5-A902-01 5 93489743 93489743 G A KIAA0825 Missense_Mutation p.S1266F 0.26 tolerated(0.06) benign(0.011) TCGA-C5-A902-01 5 96271790 96271790 C A LNPEP 5'UTR 0.36 TCGA-C5-A902-01 6 109765037 109765037 G A SMPD2 Missense_Mutation p.D401N 0.50 tolerated_low_confidence(0.22) benign(0.009) TCGA-C5-A902-01 6 131148760 131148760 C G SMLR1 Silent p.L69L 0.33 TCGA-C5-A902-01 6 138754392 138754392 C T NHSL1 Missense_Mutation p.D368N 0.35 tolerated(0.07) benign(0.327) TCGA-C5-A902-01 6 155153429 155153429 C G SCAF8 Missense_Mutation p.Q906E 0.26 tolerated_low_confidence(0.07) possibly_damaging(0.53) TCGA-C5-A902-01 6 159462454 159462454 C T TAGAP Missense_Mutation p.E137K 0.54 deleterious(0.01) possibly_damaging(0.811) TCGA-C5-A902-01 6 160858230 160858230 G A SLC22A3 Silent p.A425A 0.26 TCGA-C5-A902-01 6 167797944 167797944 G A TCP10 5'UTR 0.31 TCGA-C5-A902-01 6 18256001 18256001 C T DEK Silent p.R178R 0.25 TCGA-C5-A902-01 6 18465187 18465187 C T RNF144B Silent p.I267I 0.35 TCGA-C5-A902-01 6 24534082 24534082 G A ALDH5A1 3'UTR 0.38 TCGA-C5-A902-01 6 26017695 26017696 - TCTT HIST1H1A Frame_Shift_Ins p.S89Kfs*44 0.31 TCGA-C5-A902-01 6 26033665 26033665 G A HIST1H2AB Silent p.V44V 0.35 TCGA-C5-A902-01 6 27277728 27277728 G T POM121L2 Nonsense_Mutation p.S741* 0.30 TCGA-C5-A902-01 6 28122562 28122562 G A ZKSCAN8 3'UTR 0.46 TCGA-C5-A902-01 6 31133762 31133762 C G POU5F1 Missense_Mutation p.K156N 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-C5-A902-01 6 31797830 31797830 C T HSPA1B 3'UTR 0.22 TCGA-C5-A902-01 6 52943677 52943677 G A FBXO9 Missense_Mutation p.D140N 0.33 tolerated(0.09) possibly_damaging(0.663) TCGA-C5-A902-01 6 80749412 80749412 G C TTK Splice_Site p.X711_splice 0.30 TCGA-C5-A902-01 6 80751860 80751860 G A TTK Missense_Mutation p.G839S 0.44 deleterious(0.04) benign(0.185) TCGA-C5-A902-01 6 87725821 87725821 G C HTR1E Missense_Mutation p.E257Q 0.45 tolerated(0.24) possibly_damaging(0.59) TCGA-C5-A902-01 6 90604514 90604514 G A GJA10 Silent p.R109R 0.41 TCGA-C5-A902-01 6 96657652 96657652 C G FUT9 3'UTR 0.25 TCGA-C5-A902-01 6 99323523 99323523 C A FBXL4 Missense_Mutation p.K490N 0.39 deleterious(0.03) benign(0.064) TCGA-C5-A902-01 7 103629610 103629610 G T RELN Missense_Mutation p.P65H 0.56 deleterious(0) possibly_damaging(0.864) TCGA-C5-A902-01 7 12728308 12728308 A T ARL4A Silent p.S143S 0.08 TCGA-C5-A902-01 7 142364256 142364256 G A TRBV24-1 Missense_Mutation p.C8Y 0.82 tolerated(0.17) benign(0.034) TCGA-C5-A902-01 7 143175820 143175820 C T TAS2R41 Silent p.F285F 0.70 TCGA-C5-A902-01 7 1488253 1488253 C T MICALL2 Intron 0.57 TCGA-C5-A902-01 7 150737936 150737936 C T ABCB8 Silent p.F470F 0.73 TCGA-C5-A902-01 7 151970952 151970952 G A KMT2C Nonsense_Mutation p.R284* 0.20 TCGA-C5-A902-01 7 27213309 27213309 C T HOXA10 Missense_Mutation p.S206N 0.65 tolerated(0.51) benign(0.011) TCGA-C5-A902-01 7 39832188 39832188 A G LINC00265 RNA 0.21 TCGA-C5-A902-01 7 39832501 39832501 G A LINC00265 RNA 0.21 TCGA-C5-A902-01 7 6655760 6655760 C G ZNF853 5'UTR 0.50 TCGA-C5-A902-01 7 720323 720323 G C PRKAR1B Nonsense_Mutation p.S73* 0.39 TCGA-C5-A902-01 7 720329 720329 G A PRKAR1B Missense_Mutation p.S71L 0.37 deleterious(0.05) benign(0.001) TCGA-C5-A902-01 7 86509573 86509573 G C KIAA1324L 3'UTR 0.71 TCGA-C5-A902-01 8 117859574 117859574 G A RAD21 3'UTR 0.66 TCGA-C5-A902-01 8 127567904 127567904 A T FAM84B 3'UTR 0.21 TCGA-C5-A902-01 8 17491611 17491611 C T PDGFRL Silent p.I276I 0.38 TCGA-C5-A902-01 8 22006356 22006356 C T LGI3 Missense_Mutation p.D322N 0.45 deleterious(0.01) probably_damaging(0.989) TCGA-C5-A902-01 8 22104773 22104773 G A POLR3D Missense_Mutation p.E69K 0.50 deleterious(0.01) possibly_damaging(0.905) TCGA-C5-A902-01 8 25182961 25182961 C T DOCK5 Nonsense_Mutation p.Q601* 0.41 TCGA-C5-A902-01 8 27516362 27516362 C T SCARA3 Silent p.F225F 0.33 TCGA-C5-A902-01 8 2966212 2966212 C T CSMD1 Missense_Mutation p.E2223K 0.22 probably_damaging(0.922) TCGA-C5-A902-01 8 48775103 48775103 C T PRKDC Splice_Site p.X1916_splice 0.39 TCGA-C5-A902-01 8 48801600 48801600 G A PRKDC Silent p.L1418L 0.49 TCGA-C5-A902-01 8 80677779 80677779 G A HEY1 Missense_Mutation p.H191Y 0.39 tolerated(1) benign(0.404) TCGA-C5-A902-01 8 91636755 91636755 G A TMEM64 3'UTR 0.27 TCGA-C5-A902-01 8 95902728 95902728 C G CCNE2 Missense_Mutation p.R123T 0.29 tolerated(0.98) benign(0.004) TCGA-C5-A902-01 8 96272725 96272725 G C C8orf37 Silent p.V93V 0.48 TCGA-C5-A902-01 9 100132326 100132326 C T CCDC180 Nonsense_Mutation p.Q1482* 0.39 TCGA-C5-A902-01 9 107267458 107267458 G T OR13F1 Silent p.L305L 0.31 TCGA-C5-A902-01 9 109746487 109746487 G A ZNF462 Missense_Mutation p.E2285K 0.37 probably_damaging(0.991) TCGA-C5-A902-01 9 116131969 116131969 G A BSPRY Silent p.L252L 0.38 TCGA-C5-A902-01 9 124209713 124209713 C T RP11-162D16.2 Intron 0.36 TCGA-C5-A902-01 9 131072155 131072155 C T TRUB2 Splice_Site p.X224_splice 0.76 TCGA-C5-A902-01 9 13162729 13162729 C T MPDZ Missense_Mutation p.R1107K 0.36 tolerated(0.24) benign(0.001) TCGA-C5-A902-01 9 132591487 132591487 C G C9orf78 Missense_Mutation p.E259Q 0.42 tolerated(0.21) benign(0.347) TCGA-C5-A902-01 9 132591518 132591518 C G C9orf78 Missense_Mutation p.L248F 0.44 tolerated(0.13) possibly_damaging(0.542) TCGA-C5-A902-01 9 139389114 139389114 G A NOTCH1 3'UTR 0.54 TCGA-C5-A902-01 9 18474262 18474262 C T ADAMTSL1 Missense_Mutation p.T11I 0.52 deleterious(0) benign(0.001) TCGA-C5-A902-01 9 2844125 2844125 C T KIAA0020 5'UTR 0.48 TCGA-C5-A902-01 9 34650519 34650519 G A GALT 3'UTR 0.36 TCGA-C5-A902-01 9 73152221 73152221 C T TRPM3 Missense_Mutation p.D1258N 0.32 deleterious(0) benign(0.397) TCGA-C5-A902-01 9 77112729 77112729 C T RORB 5'UTR 0.31 TCGA-C5-A902-01 9 77386741 77386741 G A TRPM6 Silent p.L1138L 0.16 TCGA-C5-A902-01 X 110406904 110406904 C T PAK3 Missense_Mutation p.R275W 0.39 deleterious(0) probably_damaging(0.975) TCGA-C5-A902-01 X 117814547 117814547 G A DOCK11 Missense_Mutation p.E1855K 0.35 deleterious(0) probably_damaging(0.916) TCGA-C5-A902-01 X 117819660 117819660 G A DOCK11 Missense_Mutation p.E2038K 0.24 tolerated(0.23) benign(0.257) TCGA-C5-A902-01 X 118222881 118222881 G C KIAA1210 Nonsense_Mutation p.S771* 0.41 TCGA-C5-A902-01 X 118676485 118676485 C T CXorf56 Missense_Mutation p.E166K 0.41 deleterious(0.01) possibly_damaging(0.865) TCGA-C5-A902-01 X 123517734 123517734 A T TENM1 Nonsense_Mutation p.Y2349* 0.42 TCGA-C5-A902-01 X 125685319 125685319 C T DCAF12L1 Missense_Mutation p.E425K 0.35 tolerated(0.5) benign(0.097) TCGA-C5-A902-01 X 129499517 129499517 C A SLC25A14 Missense_Mutation p.S241Y 0.30 deleterious(0.04) benign(0.208) TCGA-C5-A902-01 X 13061902 13061902 C A FAM9C Missense_Mutation p.A3S 0.31 deleterious(0.03) possibly_damaging(0.739) TCGA-C5-A902-01 X 132091300 132091300 G A HS6ST2 Silent p.L161L 0.42 TCGA-C5-A902-01 X 13835135 13835135 G C GPM6B 5'UTR 0.52 TCGA-C5-A902-01 X 142121923 142121923 C G SPANXN4 Nonsense_Mutation p.S64* 0.39 TCGA-C5-A902-01 X 148039912 148039912 G T AFF2 Nonsense_Mutation p.E872* 0.38 TCGA-C5-A902-01 X 152158349 152158349 C T PNMA5 3'UTR 0.39 TCGA-C5-A902-01 X 16773193 16773193 G C SYAP1 Missense_Mutation p.R234T 0.36 tolerated(0.63) benign(0.001) TCGA-C5-A902-01 X 33229584 33229584 G A DMD 5'UTR 0.28 TCGA-C5-A902-01 X 36162986 36162986 C T CHDC2 3'UTR 0.35 TCGA-C5-A902-01 X 49955742 49955742 G C AKAP4 Missense_Mutation p.A809G 0.52 tolerated(0.12) probably_damaging(0.93) TCGA-C5-A902-01 X 53578265 53578265 C T HUWE1 Missense_Mutation p.E3020K 0.32 possibly_damaging(0.621) TCGA-C5-A902-01 X 55479071 55479071 G A MAGEH1 Silent p.K88K 0.30 TCGA-C5-A902-01 X 55514635 55514635 G C USP51 Silent p.L246L 0.27 TCGA-C5-A902-01 X 63411443 63411443 C T AMER1 Missense_Mutation p.R575Q 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-C5-A902-01 X 70322992 70322992 G A FOXO4 3'UTR 0.33 TCGA-C5-A902-01 X 70339657 70339657 C T MED12 Missense_Mutation p.S109F 0.25 benign(0.378) TCGA-C5-A902-01 X 75005040 75005040 A C MAGEE2 5'UTR 0.38 TCGA-C5-A902-01 X 99920572 99920572 C T SRPX2 Silent p.P233P 0.20 TCGA-C5-A905-01 10 105778630 105778630 C T SLK Silent p.F1032F 0.57 TCGA-C5-A905-01 10 49935563 49935563 A G WDFY4 Missense_Mutation p.D277G 0.37 tolerated(0.08) possibly_damaging(0.833) TCGA-C5-A905-01 10 76910412 76910412 C T SAMD8 Silent p.I42I 0.46 TCGA-C5-A905-01 11 47713686 47713686 C G AGBL2 Missense_Mutation p.E273Q 0.07 deleterious(0) probably_damaging(0.994) TCGA-C5-A905-01 11 558286 558286 C G C11orf35 Intron 0.54 TCGA-C5-A905-01 11 60778592 60778595 CAGA - CD6 Frame_Shift_Del p.T380Sfs*3 0.24 TCGA-C5-A905-01 11 61048680 61048680 G C VWCE Missense_Mutation p.S272C 0.43 deleterious(0) probably_damaging(0.99) TCGA-C5-A905-01 11 66445252 66445252 G C RBM4B 5'Flank 0.20 TCGA-C5-A905-01 11 77629950 77629950 G A INTS4 Silent p.F613F 0.42 TCGA-C5-A905-01 11 85367366 85367366 C G TMEM126A Missense_Mutation p.L137V 0.33 tolerated(0.62) benign(0.052) TCGA-C5-A905-01 12 120123785 120123785 G A CIT 3'UTR 0.35 TCGA-C5-A905-01 12 25256811 25256811 G A LRMP Missense_Mutation p.R325K 0.08 tolerated(0.16) probably_damaging(0.999) TCGA-C5-A905-01 12 25398279 25398279 C T KRAS Missense_Mutation p.V14I 0.43 deleterious(0) probably_damaging(0.968) TCGA-C5-A905-01 12 53346594 53346594 G C KRT18 Missense_Mutation p.E421Q 0.47 tolerated(0.07) possibly_damaging(0.764) TCGA-C5-A905-01 12 53346617 53346617 G A KRT18 Silent p.L428L 0.46 TCGA-C5-A905-01 13 64417474 64417474 G A RP11-394A14.2 RNA 0.43 TCGA-C5-A905-01 14 21557259 21557259 C T ARHGEF40 3'UTR 0.75 TCGA-C5-A905-01 14 35554831 35554831 C A PPP2R3C Missense_Mutation p.D443Y 0.52 deleterious(0.02) possibly_damaging(0.735) TCGA-C5-A905-01 14 67800581 67800581 G T MPP5 3'UTR 0.14 TCGA-C5-A905-01 15 27159947 27159947 C T GABRA5 Intron 0.19 TCGA-C5-A905-01 15 39882753 39882753 G A THBS1 Missense_Mutation p.D728N 0.52 deleterious(0.03) probably_damaging(0.995) TCGA-C5-A905-01 15 45713353 45713354 - T SPATA5L1 Frame_Shift_Ins p.L737Ffs*3 0.26 TCGA-C5-A905-01 15 76030768 76030768 A G AC019294.1 Missense_Mutation p.E131G 0.07 deleterious_low_confidence(0) possibly_damaging(0.617) TCGA-C5-A905-01 15 78786597 78786597 G A IREB2 Silent p.P862P 0.14 TCGA-C5-A905-01 15 87066160 87066160 G A AGBL1 Missense_Mutation p.R846Q 0.44 deleterious(0.02) benign(0.418) TCGA-C5-A905-01 15 98984368 98984368 C A FAM169B Missense_Mutation p.V131L 0.47 tolerated(0.67) benign(0.002) TCGA-C5-A905-01 16 23641681 23641681 C G PALB2 Silent p.L598L 0.43 TCGA-C5-A905-01 16 29680804 29680804 G A SPN 3'UTR 0.67 TCGA-C5-A905-01 16 30505572 30505572 C T ITGAL Missense_Mutation p.S418L 0.42 tolerated(0.21) benign(0.002) TCGA-C5-A905-01 16 88765469 88765469 G A RNF166 Silent p.F150F 0.43 TCGA-C5-A905-01 17 13504535 13504535 C T HS3ST3A1 5'UTR 0.31 TCGA-C5-A905-01 17 34431361 34431361 G A CCL4 Silent p.A21A 0.12 TCGA-C5-A905-01 17 37619141 37619141 C T CDK12 Nonsense_Mutation p.Q273* 0.42 TCGA-C5-A905-01 17 40343104 40343104 G A GHDC Silent p.L338L 0.48 TCGA-C5-A905-01 17 40731540 40731540 C T FAM134C 3'UTR 0.45 TCGA-C5-A905-01 17 40732548 40732548 C G FAM134C 3'UTR 0.40 TCGA-C5-A905-01 17 72218728 72218728 G A TTYH2 Silent p.A78A 0.43 TCGA-C5-A905-01 17 77987255 77987255 G A TBC1D16 Missense_Mutation p.S31F 0.39 deleterious(0.03) possibly_damaging(0.522) TCGA-C5-A905-01 18 14796399 14796399 G C ANKRD30B Missense_Mutation p.E638Q 0.34 tolerated_low_confidence(0.7) benign(0.009) TCGA-C5-A905-01 18 60625956 60625956 G A PHLPP1 Missense_Mutation p.R1140H 0.41 deleterious(0) probably_damaging(0.999) TCGA-C5-A905-01 19 1785165 1785165 C T ATP8B3 Silent p.P1175P 0.94 TCGA-C5-A905-01 19 36047973 36047973 G A ATP4A Silent p.L571L 0.39 TCGA-C5-A905-01 19 49132392 49132392 A T SPHK2 Missense_Mutation p.I443F 0.35 tolerated(0.76) benign(0.002) TCGA-C5-A905-01 19 53793269 53793269 C T BIRC8 Missense_Mutation p.R120Q 0.45 tolerated(0.55) benign(0.01) TCGA-C5-A905-01 19 756965 756965 T C MISP Missense_Mutation p.Y7H 0.21 deleterious(0.03) possibly_damaging(0.584) TCGA-C5-A905-01 19 756973 756973 C G MISP Missense_Mutation p.I9M 0.26 deleterious(0) probably_damaging(0.981) TCGA-C5-A905-01 1 100212850 100212850 C T FRRS1 Silent p.Q111Q 0.07 TCGA-C5-A905-01 1 1116172 1116172 C T TTLL10 Silent p.L229L 0.42 TCGA-C5-A905-01 1 115231240 115231240 C T AMPD1 Missense_Mutation p.E86K 0.37 deleterious(0) probably_damaging(0.998) TCGA-C5-A905-01 1 11718337 11718337 C G FBXO44 Missense_Mutation p.F93L 0.48 tolerated(0.58) possibly_damaging(0.551) TCGA-C5-A905-01 1 150293971 150293971 G A PRPF3 5'UTR 0.46 TCGA-C5-A905-01 1 151512839 151512839 G T TUFT1 5'UTR 0.48 TCGA-C5-A905-01 1 152058471 152058471 C T TCHHL1 Missense_Mutation p.E563K 0.39 deleterious(0.05) benign(0.093) TCGA-C5-A905-01 1 153782715 153782715 C T GATAD2B Missense_Mutation p.E574K 0.13 deleterious(0) probably_damaging(0.987) TCGA-C5-A905-01 1 179620154 179620154 G C TDRD5 Missense_Mutation p.L651F 0.44 deleterious(0) probably_damaging(1) TCGA-C5-A905-01 1 179815895 179815895 G C TOR1AIP2 Missense_Mutation p.P242A 0.38 deleterious(0.02) benign(0.41) TCGA-C5-A905-01 1 207874875 207874875 G A CR1L Missense_Mutation p.E414K 0.06 tolerated(0.41) benign(0) TCGA-C5-A905-01 1 212273975 212273975 G A DTL Missense_Mutation p.R548K 0.47 tolerated(0.06) benign(0.065) TCGA-C5-A905-01 1 215410381 215410381 G A KCNK2 3'UTR 0.46 TCGA-C5-A905-01 1 22165411 22165411 C G HSPG2 Missense_Mutation p.E3353Q 0.56 benign(0.038) TCGA-C5-A905-01 1 34076714 34076714 C T CSMD2 Silent p.T2050T 0.52 TCGA-C5-A905-01 1 35228019 35228019 G T GJB4 3'UTR 0.56 TCGA-C5-A905-01 1 43630075 43630075 C T EBNA1BP2 3'UTR 0.33 TCGA-C5-A905-01 1 47402372 47402372 A G CYP4A11 Silent p.Y158Y 0.09 TCGA-C5-A905-01 1 60338555 60338555 G A HOOK1 Missense_Mutation p.R702Q 0.58 tolerated(1) benign(0.121) TCGA-C5-A905-01 20 42198135 42198135 C T SGK2 Silent p.L173L 0.54 TCGA-C5-A905-01 20 56226419 56226419 C G PMEPA1 3'UTR 0.43 TCGA-C5-A905-01 20 60883198 60883198 G C ADRM1 Missense_Mutation p.E326D 0.08 deleterious(0.05) unknown(0) TCGA-C5-A905-01 22 22843473 22843473 C T ZNF280B Missense_Mutation p.R84H 0.43 tolerated(0.54) benign(0.001) TCGA-C5-A905-01 22 22985637 22985637 T C GGTLC2 5'Flank 0.08 TCGA-C5-A905-01 22 22986738 22986738 A G GGTLC2 5'Flank 0.23 TCGA-C5-A905-01 22 30700595 30700595 C A TBC1D10A Silent p.V85V 0.45 TCGA-C5-A905-01 22 38993303 38993303 G A FAM227A Missense_Mutation p.R475W 0.44 deleterious(0.02) possibly_damaging(0.806) TCGA-C5-A905-01 22 42973867 42973867 G A SERHL2 3'Flank 0.54 TCGA-C5-A905-01 22 46319191 46319191 C G WNT7B Missense_Mutation p.E199Q 0.41 tolerated(0.07) possibly_damaging(0.629) TCGA-C5-A905-01 2 130910188 130910188 A G SMPD4 Silent p.Y847Y 0.10 TCGA-C5-A905-01 2 130910210 130910210 G A SMPD4 Missense_Mutation p.T840M 0.09 deleterious(0.03) probably_damaging(0.968) TCGA-C5-A905-01 2 179402313 179402315 ATA - TTN In_Frame_Del p.Y33207del 0.38 TCGA-C5-A905-01 2 182344880 182344880 G A ITGA4 Missense_Mutation p.G214E 0.39 deleterious(0) probably_damaging(1) TCGA-C5-A905-01 2 201342579 201342579 C T SPATS2L Missense_Mutation p.A501V 0.37 tolerated_low_confidence(0.33) benign(0.005) TCGA-C5-A905-01 2 70315026 70315026 G A PCBP1 Missense_Mutation p.E51K 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-C5-A905-01 2 96688006 96688006 C T GPAT2 Silent p.P763P 0.08 TCGA-C5-A905-01 2 99978280 99978280 G A EIF5B Missense_Mutation p.E306K 0.30 benign(0) TCGA-C5-A905-01 3 108626754 108626754 G A GUCA1C 3'UTR 0.63 TCGA-C5-A905-01 3 134911429 134911429 G A EPHB1 Missense_Mutation p.E632K 0.59 deleterious(0) probably_damaging(1) TCGA-C5-A905-01 3 136664847 136664847 A G NCK1 Missense_Mutation p.M217V 0.17 deleterious(0.01) benign(0.326) TCGA-C5-A905-01 3 142731109 142731109 C T U2SURP Nonsense_Mutation p.R46* 0.17 TCGA-C5-A905-01 3 170023070 170023070 C T PRKCI 3'UTR 0.06 TCGA-C5-A905-01 3 189526299 189526299 A T TP63 Missense_Mutation p.K188M 0.76 deleterious(0) probably_damaging(0.998) TCGA-C5-A905-01 3 195517636 195517636 G C MUC4 Missense_Mutation p.S272C 0.06 unknown(0) TCGA-C5-A905-01 3 21462739 21462739 G A ZNF385D Silent p.T385T 0.04 TCGA-C5-A905-01 3 33087669 33087669 C T GLB1 Silent p.L337L 0.90 TCGA-C5-A905-01 4 100057697 100057697 C T ADH4 Missense_Mutation p.D168N 0.39 tolerated(0.15) possibly_damaging(0.731) TCGA-C5-A905-01 4 103717443 103717443 A G UBE2D3 3'Flank 0.09 TCGA-C5-A905-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.26 deleterious(0) probably_damaging(1) TCGA-C5-A905-01 4 177650867 177650867 G A VEGFC Missense_Mutation p.R61W 0.43 deleterious(0) probably_damaging(1) TCGA-C5-A905-01 4 40439839 40439839 C T RBM47 Missense_Mutation p.G358S 0.72 tolerated(0.12) benign(0.018) TCGA-C5-A905-01 5 140789451 140789451 G A PCDHGB6 Missense_Mutation p.R561Q 0.93 tolerated(0.21) benign(0.097) TCGA-C5-A905-01 5 176665274 176665274 C T NSD1 Nonsense_Mutation p.R1320* 0.91 TCGA-C5-A905-01 5 41142995 41142995 C T C6 Missense_Mutation p.E913K 0.30 tolerated(0.91) benign(0.005) TCGA-C5-A905-01 5 43704498 43704498 C T NNT Nonsense_Mutation p.Q1085* 0.22 TCGA-C5-A905-01 5 94353155 94353155 C T MCTP1 Missense_Mutation p.E252K 0.15 tolerated(0.09) benign(0.021) TCGA-C5-A905-01 6 132032100 132032100 C G CTAGE9 Missense_Mutation p.G20R 0.11 tolerated(1) benign(0) TCGA-C5-A905-01 6 152783947 152783947 C G SYNE1 Missense_Mutation p.E726Q 0.39 benign(0.032) TCGA-C5-A905-01 6 35213825 35213825 G A SCUBE3 Missense_Mutation p.E902K 0.51 deleterious(0.01) probably_damaging(0.982) TCGA-C5-A905-01 6 47682151 47682151 C G GPR115 Silent p.L390L 0.57 TCGA-C5-A905-01 7 101194405 101194405 G A COL26A1 Missense_Mutation p.R337Q 0.41 tolerated(0.13) benign(0.005) TCGA-C5-A905-01 7 141836376 141836376 C A RP11-1220K2.2 Missense_Mutation p.F261L 0.44 deleterious(0.01) benign(0.097) TCGA-C5-A905-01 7 3998624 3998624 G T SDK1 Silent p.V404V 0.54 TCGA-C5-A905-01 8 77765144 77765144 C G ZFHX4 Missense_Mutation p.S1996C 0.39 possibly_damaging(0.843) TCGA-C5-A905-01 9 113173750 113173750 G C SVEP1 Missense_Mutation p.H2081D 0.35 benign(0.002) TCGA-C5-A905-01 9 114543285 114543285 G A C9orf84 5'UTR 0.42 TCGA-C5-A905-01 9 125898322 125898322 G A STRBP Nonsense_Mutation p.Q591* 0.44 TCGA-C5-A905-01 9 139333517 139333517 C T INPP5E Missense_Mutation p.E119K 0.44 tolerated_low_confidence(0.22) benign(0.023) TCGA-C5-A905-01 9 21974804 21974804 C A CDKN2A Missense_Mutation p.S8I 0.56 deleterious_low_confidence(0.03) benign(0.014) TCGA-C5-A905-01 9 21974805 21974805 T G CDKN2A Missense_Mutation p.S8R 0.53 tolerated_low_confidence(0.18) benign(0) TCGA-C5-A905-01 9 27949241 27949241 C G LINGO2 Missense_Mutation p.D477H 0.52 deleterious(0) probably_damaging(1) TCGA-C5-A905-01 9 399152 399152 G C DOCK8 Missense_Mutation p.E1043Q 0.08 deleterious(0.02) benign(0.429) TCGA-C5-A905-01 9 79792460 79792460 C T VPS13A 5'UTR 0.67 TCGA-C5-A905-01 9 97849150 97849150 C G C9orf3 3'UTR 0.46 TCGA-C5-A905-01 X 105451624 105451624 T G MUM1L1 3'UTR 0.57 TCGA-C5-A905-01 X 135314128 135314128 C T MAP7D3 Missense_Mutation p.A330T 0.09 tolerated(0.44) benign(0.003) TCGA-C5-A905-01 X 17878691 17878691 C T RAI2 Intron 0.06 TCGA-C5-A905-01 X 18802157 18802157 G C PPEF1 Missense_Mutation p.E301D 0.39 tolerated(0.66) benign(0.168) TCGA-C5-A905-01 X 51150150 51150150 G A CXorf67 Silent p.T94T 0.48 TCGA-C5-A905-01 X 54029030 54029030 G C PHF8 Silent p.L380L 0.37 TCGA-C5-A905-01 X 54950945 54950945 G A TRO Missense_Mutation p.R433Q 0.43 tolerated(0.33) unknown(0) TCGA-C5-A905-01 X 74285010 74285010 C T ABCB7 Missense_Mutation p.E577K 0.14 deleterious(0.03) benign(0.043) TCGA-C5-A905-01 X 99551677 99551677 G A PCDH19 Silent p.F1015F 0.45 TCGA-C5-A907-01 10 105362217 105362217 C T SH3PXD2A Missense_Mutation p.E892K 0.27 tolerated(0.53) benign(0.016) TCGA-C5-A907-01 10 17949715 17949715 G - MRC1L1 Splice_Site p.X1360_splice 0.16 TCGA-C5-A907-01 10 85994017 85994017 C T LRIT1 Missense_Mutation p.R236H 0.30 tolerated(0.07) possibly_damaging(0.899) TCGA-C5-A907-01 10 95111578 95111578 G A MYOF Silent p.L1169L 0.25 TCGA-C5-A907-01 11 126135956 126135956 C T SRPR Missense_Mutation p.G318D 0.38 deleterious(0.04) probably_damaging(0.991) TCGA-C5-A907-01 11 17378340 17378340 G A NCR3LG1 Silent p.T71T 0.35 TCGA-C5-A907-01 11 46785090 46785090 C G CKAP5 Missense_Mutation p.D1210H 0.33 tolerated(0.06) possibly_damaging(0.85) TCGA-C5-A907-01 11 64893391 64893391 C T MRPL49 3'UTR 0.36 TCGA-C5-A907-01 11 64893402 64893402 C T MRPL49 3'UTR 0.36 TCGA-C5-A907-01 11 7489851 7489851 G A SYT9 3'UTR 0.36 TCGA-C5-A907-01 11 93460336 93460336 A T KIAA1731 Missense_Mutation p.I2232L 0.15 tolerated(0.11) benign(0.007) TCGA-C5-A907-01 11 96075075 96075075 G A MAML2 5'UTR 0.15 TCGA-C5-A907-01 12 123470087 123470087 C T PITPNM2 3'UTR 0.33 TCGA-C5-A907-01 12 57039745 57039745 C T ATP5B Translation_Start_Site p.M1? 0.21 tolerated_low_confidence(0.25) benign(0.403) TCGA-C5-A907-01 15 28443834 28443834 C G HERC2 Missense_Mutation p.D2600H 0.20 probably_damaging(0.992) TCGA-C5-A907-01 15 42632075 42632075 C G GANC Missense_Mutation p.F684L 0.31 possibly_damaging(0.686) TCGA-C5-A907-01 15 50190295 50190295 C T ATP8B4 Missense_Mutation p.D815N 0.12 deleterious(0) probably_damaging(1) TCGA-C5-A907-01 15 50190430 50190430 C T ATP8B4 Missense_Mutation p.D770N 0.12 tolerated(0.56) benign(0.04) TCGA-C5-A907-01 15 62994255 62994255 G A TLN2 Silent p.L587L 0.16 TCGA-C5-A907-01 15 76634218 76634218 C A ISL2 3'UTR 0.21 TCGA-C5-A907-01 16 69729153 69729153 C G NFAT5 Missense_Mutation p.S1510C 0.33 possibly_damaging(0.885) TCGA-C5-A907-01 17 16593992 16593992 T G CCDC144A Missense_Mutation p.V93G 0.21 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-C5-A907-01 17 42395577 42395577 G A RUNDC3A Missense_Mutation p.E438K 0.17 deleterious_low_confidence(0) benign(0.154) TCGA-C5-A907-01 17 46002343 46002343 G A SP2 Silent p.L477L 0.34 TCGA-C5-A907-01 17 46002389 46002389 G C SP2 Missense_Mutation p.E493Q 0.34 tolerated(0.1) probably_damaging(0.971) TCGA-C5-A907-01 17 46005442 46005442 G T SP2 3'UTR 0.30 TCGA-C5-A907-01 18 56586602 56586602 C A ZNF532 Silent p.V361V 0.33 TCGA-C5-A907-01 18 6950888 6950888 C T LAMA1 Missense_Mutation p.A2764T 0.34 deleterious(0.03) probably_damaging(0.995) TCGA-C5-A907-01 19 44101304 44101304 C T ZNF576 Missense_Mutation p.S15L 0.38 deleterious_low_confidence(0.05) benign(0.261) TCGA-C5-A907-01 19 46021019 46021019 G A VASP Missense_Mutation p.R35H 0.18 deleterious(0.01) unknown(0) TCGA-C5-A907-01 19 48981323 48981323 C T CYTH2 Intron 0.25 TCGA-C5-A907-01 19 52569453 52569453 C T ZNF841 Missense_Mutation p.R561K 0.11 tolerated(0.57) benign(0.079) TCGA-C5-A907-01 19 56459532 56459532 G C NLRP8 Missense_Mutation p.L88F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-C5-A907-01 19 56696749 56696749 G - GALP 3'UTR 0.41 TCGA-C5-A907-01 1 120438631 120438631 C - ADAM30 Frame_Shift_Del p.C110Sfs*7 0.27 TCGA-C5-A907-01 1 152083230 152083230 G C TCHH Silent p.R821R 0.32 TCGA-C5-A907-01 1 183109608 183109608 A G LAMC1 Missense_Mutation p.S1515G 0.33 tolerated(0.32) benign(0) TCGA-C5-A907-01 1 66838513 66838513 G A PDE4B 3'UTR 0.33 TCGA-C5-A907-01 1 77620228 77620228 C T PIGK Missense_Mutation p.V298I 0.36 tolerated(0.06) possibly_damaging(0.723) TCGA-C5-A907-01 21 46900767 46900767 C T COL18A1 Missense_Mutation p.L716F 0.33 possibly_damaging(0.765) TCGA-C5-A907-01 22 43651515 43651515 C T SCUBE1 Intron 0.32 TCGA-C5-A907-01 22 51178381 51178381 G A ACR Missense_Mutation p.G181S 0.20 deleterious(0) probably_damaging(1) TCGA-C5-A907-01 2 204341839 204341839 C - RAPH1 Intron 0.26 TCGA-C5-A907-01 2 218747092 218747092 G A TNS1 Missense_Mutation p.S305F 0.31 deleterious(0) possibly_damaging(0.903) TCGA-C5-A907-01 2 231311575 231311575 G A SP100 Missense_Mutation p.E161K 0.47 tolerated(0.06) possibly_damaging(0.486) TCGA-C5-A907-01 2 231311584 231311584 G T SP100 Nonsense_Mutation p.E164* 0.41 TCGA-C5-A907-01 2 234749982 234749982 T G HJURP Missense_Mutation p.T482P 0.21 deleterious(0) possibly_damaging(0.878) TCGA-C5-A907-01 2 31599979 31599979 T C XDH Missense_Mutation p.Y456C 0.33 deleterious(0) probably_damaging(0.954) TCGA-C5-A907-01 2 55476622 55476622 G C MTIF2 Missense_Mutation p.P297R 0.41 deleterious(0.03) probably_damaging(1) TCGA-C5-A907-01 3 180359803 180359803 C T CCDC39 Missense_Mutation p.D618N 0.24 deleterious(0) benign(0.098) TCGA-C5-A907-01 3 184020251 184020251 G A PSMD2 Silent p.L266L 0.19 TCGA-C5-A907-01 3 72897410 72897410 C T SHQ1 Missense_Mutation p.E28K 0.25 deleterious(0) probably_damaging(0.973) TCGA-C5-A907-01 4 113468554 113468554 C G C4orf21 Missense_Mutation p.E1829Q 0.18 deleterious(0) probably_damaging(0.925) TCGA-C5-A907-01 4 123818583 123818583 C G FGF2 3'UTR 0.36 TCGA-C5-A907-01 4 123819035 123819035 C T FGF2 3'UTR 0.38 TCGA-C5-A907-01 4 123819121 123819121 C T FGF2 3'UTR 0.30 TCGA-C5-A907-01 4 123819223 123819223 C T FGF2 3'UTR 0.30 TCGA-C5-A907-01 4 56325173 56325173 G A CLOCK Silent p.S226S 0.68 TCGA-C5-A907-01 4 56325174 56325174 G C CLOCK Missense_Mutation p.S226C 0.70 deleterious(0) possibly_damaging(0.566) TCGA-C5-A907-01 4 70346610 70346610 C T UGT2B4 Missense_Mutation p.M443I 0.16 deleterious(0.03) benign(0.017) TCGA-C5-A907-01 4 72338583 72338583 C T SLC4A4 Missense_Mutation p.A600V 0.47 deleterious(0) probably_damaging(0.998) TCGA-C5-A907-01 4 7435796 7435796 C T PSAPL1 Missense_Mutation p.G271R 0.29 tolerated(0.53) benign(0.019) TCGA-C5-A907-01 4 82125769 82125769 C G PRKG2 Missense_Mutation p.E145Q 0.24 tolerated(0.23) possibly_damaging(0.894) TCGA-C5-A907-01 5 140257036 140257036 C T PCDHA12 Missense_Mutation p.T660M 0.46 deleterious_low_confidence(0.05) possibly_damaging(0.458) TCGA-C5-A907-01 5 80655713 80655713 T C ACOT12 Intron 0.24 TCGA-C5-A907-01 7 151960110 151960110 C T KMT2C Nonsense_Mutation p.W430* 0.38 TCGA-C5-A907-01 7 151960111 151960111 C T KMT2C Nonsense_Mutation p.W430* 0.38 TCGA-C5-A907-01 7 22348025 22348025 G A RAPGEF5 Nonsense_Mutation p.Q52* 0.15 TCGA-C5-A907-01 7 41729032 41729032 C T INHBA 3'UTR 0.41 TCGA-C5-A907-01 7 4249743 4249743 G A SDK1 Missense_Mutation p.G1830S 0.32 deleterious(0) probably_damaging(0.999) TCGA-C5-A907-01 8 48691161 48691161 G - PRKDC Frame_Shift_Del p.F3903Lfs*7 0.17 TCGA-C5-A907-01 9 18777048 18777048 G A ADAMTSL1 Missense_Mutation p.D941N 0.21 deleterious(0.03) probably_damaging(1) TCGA-C5-A907-01 9 35237744 35237744 G T UNC13B Missense_Mutation p.M105I 0.36 deleterious_low_confidence(0.01) benign(0.011) TCGA-C5-A907-01 X 25033887 25033887 G A ARX 5'UTR 0.24 TCGA-C5-A907-01 X 41586801 41586801 C G GPR82 Nonsense_Mutation p.Y174* 0.33 TCGA-C5-A907-01 X 63444982 63444982 G A ASB12 Silent p.G183G 0.38 TCGA-C5-A907-01 X 99662967 99662967 G A PCDH19 Missense_Mutation p.A210V 0.20 deleterious(0) probably_damaging(1) TCGA-DG-A2KH-01 10 104176486 104176486 G A PSD Missense_Mutation p.R104C 0.13 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DG-A2KH-01 10 55581942 55581942 G A PCDH15 Silent p.C1850C 0.43 TCGA-DG-A2KH-01 10 95326827 95326827 T G FFAR4 Missense_Mutation p.V117G 0.25 deleterious(0.02) benign(0.018) TCGA-DG-A2KH-01 11 102269518 102269518 T C TMEM123 3'UTR 0.33 TCGA-DG-A2KH-01 11 103908787 103908787 C T DDI1 3'UTR 0.07 TCGA-DG-A2KH-01 11 117098005 117098005 C G PCSK7 Missense_Mutation p.D213H 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-DG-A2KH-01 11 117098017 117098017 G A PCSK7 Missense_Mutation p.L209F 0.17 tolerated(0.05) possibly_damaging(0.859) TCGA-DG-A2KH-01 11 117100428 117100428 C G PCSK7 Missense_Mutation p.D45H 0.15 tolerated_low_confidence(0.11) benign(0.155) TCGA-DG-A2KH-01 11 130775929 130775929 C T SNX19 Missense_Mutation p.E788K 0.56 tolerated(0.37) benign(0.03) TCGA-DG-A2KH-01 11 131781285 131781285 G C NTM 5'Flank 0.16 TCGA-DG-A2KH-01 11 32456360 32456360 C T WT1 Missense_Mutation p.G178R 0.10 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-DG-A2KH-01 11 3846311 3846311 C T PGAP2 Missense_Mutation p.S257L 0.29 tolerated(0.79) benign(0.001) TCGA-DG-A2KH-01 11 400104 400104 G A PKP3 Missense_Mutation p.E471K 0.35 deleterious(0) probably_damaging(0.997) TCGA-DG-A2KH-01 11 6341326 6341326 G C PRKCDBP Missense_Mutation p.F127L 0.52 tolerated(0.06) benign(0.025) TCGA-DG-A2KH-01 11 74041408 74041408 A C PGM2L1 3'UTR 0.09 TCGA-DG-A2KH-01 12 50236730 50236730 G A BCDIN3D Silent p.L47L 0.25 TCGA-DG-A2KH-01 12 80083663 80083663 G A PAWR Missense_Mutation p.P121L 0.24 tolerated(0.06) possibly_damaging(0.579) TCGA-DG-A2KH-01 13 23929110 23929110 C T SACS Silent p.P547P 0.24 TCGA-DG-A2KH-01 13 46716972 46716972 C T LCP1 Intron 0.26 TCGA-DG-A2KH-01 14 105407428 105407428 C T AHNAK2 Missense_Mutation p.C4787Y 0.10 possibly_damaging(0.61) TCGA-DG-A2KH-01 14 105417627 105417627 G A AHNAK2 Silent p.L1387L 0.23 TCGA-DG-A2KH-01 14 24423192 24423192 C T DHRS4 Intron 0.37 TCGA-DG-A2KH-01 14 94756352 94756352 C T SERPINA10 Missense_Mutation p.M193I 0.34 tolerated(0.21) benign(0.015) TCGA-DG-A2KH-01 15 65411147 65411147 C T PDCD7 Missense_Mutation p.D456N 0.11 deleterious(0.02) benign(0.043) TCGA-DG-A2KH-01 15 90171708 90171708 C T KIF7 Missense_Mutation p.R1325Q 0.21 deleterious(0.01) possibly_damaging(0.804) TCGA-DG-A2KH-01 16 48212593 48212593 G T ABCC11 Missense_Mutation p.A1088E 0.29 deleterious(0) possibly_damaging(0.838) TCGA-DG-A2KH-01 17 39913930 39913930 G A JUP Missense_Mutation p.S627L 0.15 tolerated(0.06) benign(0.411) TCGA-DG-A2KH-01 17 48828856 48828856 G A LUC7L3 3'UTR 0.24 TCGA-DG-A2KH-01 17 54672729 54672741 GGGAACTTTTGTA - NOG 3'UTR 0.23 TCGA-DG-A2KH-01 17 55055543 55055543 C T SCPEP1 Missense_Mutation p.S8F 0.39 tolerated_low_confidence(0.67) unknown(0) TCGA-DG-A2KH-01 19 33493743 33493743 C T RHPN2 Silent p.V308V 0.55 TCGA-DG-A2KH-01 19 38818030 38818030 C T KCNK6 Missense_Mutation p.S310F 0.22 deleterious(0) probably_damaging(0.94) TCGA-DG-A2KH-01 19 39075580 39075580 C T RYR1 Intron 0.17 TCGA-DG-A2KH-01 19 39230771 39230771 G A CAPN12 Silent p.L217L 0.11 TCGA-DG-A2KH-01 19 39876993 39876993 C G PAF1 Missense_Mutation p.E412Q 0.17 deleterious(0.05) unknown(0) TCGA-DG-A2KH-01 19 46029811 46029811 G A VASP 3'UTR 0.29 TCGA-DG-A2KH-01 19 52206523 52206523 C T SPACA6P RNA 0.40 TCGA-DG-A2KH-01 19 863327 863327 G A CFD 3'UTR 0.12 TCGA-DG-A2KH-01 19 9057477 9057477 C T MUC16 Missense_Mutation p.R9990K 0.23 unknown(0) TCGA-DG-A2KH-01 19 9058918 9058918 C T MUC16 Missense_Mutation p.E9510K 0.12 unknown(0) TCGA-DG-A2KH-01 1 110738295 110738295 C G SLC6A17 Missense_Mutation p.S527W 0.34 deleterious(0) probably_damaging(1) TCGA-DG-A2KH-01 1 117156384 117156384 G A IGSF3 Intron 0.20 TCGA-DG-A2KH-01 1 150975116 150975116 G C FAM63A Missense_Mutation p.P41R 0.24 deleterious_low_confidence(0) benign(0.032) TCGA-DG-A2KH-01 1 166039976 166039976 C G FAM78B Missense_Mutation p.L96F 0.47 deleterious(0) probably_damaging(0.974) TCGA-DG-A2KH-01 1 166818801 166818801 C A POGK Missense_Mutation p.Q329K 0.45 deleterious(0.01) possibly_damaging(0.761) TCGA-DG-A2KH-01 1 18807595 18807595 G A KLHDC7A Silent p.S40S 0.41 TCGA-DG-A2KH-01 1 201798396 201798396 G A IPO9 Missense_Mutation p.G20E 0.26 tolerated(0.59) benign(0.001) TCGA-DG-A2KH-01 1 207071173 207071173 G A IL24 5'UTR 0.26 TCGA-DG-A2KH-01 1 237787089 237787089 G A RYR2 Missense_Mutation p.D1981N 0.14 benign(0.028) TCGA-DG-A2KH-01 1 38510891 38510891 C T POU3F1 3'UTR 0.22 TCGA-DG-A2KH-01 1 39878480 39878480 A T KIAA0754 Missense_Mutation p.D712V 0.12 unknown(0) TCGA-DG-A2KH-01 1 46661518 46661518 C T POMGNT1 Missense_Mutation p.V167I 0.06 benign(0.05) TCGA-DG-A2KH-01 1 57173318 57173318 C T PRKAA2 Missense_Mutation p.R531C 0.31 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DG-A2KH-01 1 71542534 71542534 C TT ZRANB2 Frame_Shift_Ins p.R82Kfs*5 0.19 TCGA-DG-A2KH-01 20 60574120 60574120 G A TAF4 Silent p.L944L 0.52 TCGA-DG-A2KH-01 21 30714889 30714889 C T BACH1 Missense_Mutation p.S649L 0.17 tolerated(0.1) probably_damaging(0.994) TCGA-DG-A2KH-01 22 21345972 21345972 C T LZTR1 Missense_Mutation p.R283W 0.13 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KH-01 22 23223533 23223533 G A IGLV3-1 Silent p.E101E 0.21 TCGA-DG-A2KH-01 22 31328630 31328630 G A MORC2 Silent p.V821V 0.31 TCGA-DG-A2KH-01 22 33258023 33258023 A T TIMP3 3'UTR 0.52 TCGA-DG-A2KH-01 2 11740983 11740983 A G GREB1 Silent p.R797R 0.06 TCGA-DG-A2KH-01 2 179714862 179714862 C T CCDC141 Missense_Mutation p.E1091K 0.31 deleterious(0) probably_damaging(0.985) TCGA-DG-A2KH-01 2 240098187 240098187 G A HDAC4 Missense_Mutation p.R138C 0.36 deleterious(0.02) possibly_damaging(0.896) TCGA-DG-A2KH-01 2 241685531 241685531 G A KIF1A Missense_Mutation p.R1043C 0.11 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KH-01 2 27164947 27164947 C T DPYSL5 Missense_Mutation p.P407S 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-DG-A2KH-01 2 27826116 27826116 G A ZNF512 Missense_Mutation p.G293E 0.07 tolerated(0.09) benign(0.017) TCGA-DG-A2KH-01 2 29217596 29217596 G A FAM179A 5'UTR 0.12 TCGA-DG-A2KH-01 2 84960571 84960571 C T DNAH6 Missense_Mutation p.R3404C 0.16 tolerated(0.14) possibly_damaging(0.892) TCGA-DG-A2KH-01 3 122152575 122152575 G A KPNA1 Missense_Mutation p.R395W 0.19 deleterious(0) probably_damaging(0.965) TCGA-DG-A2KH-01 3 195512210 195512210 G C MUC4 Missense_Mutation p.L2081V 0.06 unknown(0) TCGA-DG-A2KH-01 3 31203262 31203263 AC - hsa-mir-466 RNA 0.34 TCGA-DG-A2KH-01 3 38080893 38080893 C T DLEC1 Silent p.F59F 0.41 TCGA-DG-A2KH-01 3 4345118 4345118 G A SETMAR Missense_Mutation p.E22K 0.38 tolerated_low_confidence(0.06) benign(0.061) TCGA-DG-A2KH-01 3 49939929 49939929 C T MST1R Missense_Mutation p.D372N 0.21 tolerated(0.25) benign(0.013) TCGA-DG-A2KH-01 4 175224923 175224923 G A CEP44 Missense_Mutation p.E103K 0.38 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KH-01 4 74606440 74606441 - T IL8 Splice_Site p.X22_splice 0.36 TCGA-DG-A2KH-01 5 140220969 140220969 C T PCDHA8 Silent p.L21L 0.10 TCGA-DG-A2KH-01 5 1422122 1422122 C T SLC6A3 Missense_Mutation p.V221M 0.43 deleterious(0.04) possibly_damaging(0.793) TCGA-DG-A2KH-01 5 159520131 159520131 C T PWWP2A Missense_Mutation p.R509H 0.24 deleterious(0.02) probably_damaging(0.98) TCGA-DG-A2KH-01 5 171491807 171491807 C T STK10 Missense_Mutation p.E667K 0.14 deleterious(0.03) benign(0.052) TCGA-DG-A2KH-01 5 56218909 56218909 C G MIER3 3'UTR 0.10 TCGA-DG-A2KH-01 6 32188317 32188317 C T NOTCH4 Missense_Mutation p.V342M 0.56 tolerated(0.08) probably_damaging(1) TCGA-DG-A2KH-01 6 64431264 64431264 C T EYS Missense_Mutation p.G2888D 0.90 deleterious(0) probably_damaging(0.989) TCGA-DG-A2KH-01 7 139164445 139164445 C A KLRG2 Silent p.A311A 0.16 TCGA-DG-A2KH-01 7 21551320 21551320 G A SP4 3'UTR 0.12 TCGA-DG-A2KH-01 7 45125156 45125156 A G NACAD Missense_Mutation p.L208P 0.21 tolerated(0.16) probably_damaging(0.996) TCGA-DG-A2KH-01 8 124033739 124033739 C T DERL1 Missense_Mutation p.A152T 0.16 deleterious(0) probably_damaging(0.96) TCGA-DG-A2KH-01 8 128750880 128750880 C T MYC Silent p.F139F 0.14 TCGA-DG-A2KH-01 8 23021470 23021470 G A TNFRSF10D 5'UTR 0.32 TCGA-DG-A2KH-01 9 123676541 123676541 G A TRAF1 Missense_Mutation p.P89L 0.30 tolerated(0.2) benign(0.4) TCGA-DG-A2KH-01 9 124906636 124906636 G A NDUFA8 Nonsense_Mutation p.R135* 0.26 TCGA-DG-A2KH-01 9 130427590 130427590 G A STXBP1 Missense_Mutation p.D215N 0.21 deleterious(0.01) possibly_damaging(0.714) TCGA-DG-A2KH-01 9 71714871 71714871 C T FXN 3'UTR 0.26 TCGA-DG-A2KH-01 9 73151768 73151768 C T TRPM3 Missense_Mutation p.E1409K 0.28 tolerated_low_confidence(0.09) possibly_damaging(0.631) TCGA-DG-A2KH-01 X 132548981 132548981 C T GPC4 Missense_Mutation p.G5S 0.39 tolerated(0.28) benign(0.006) TCGA-DG-A2KH-01 X 13636149 13636149 G A EGFL6 Missense_Mutation p.R360Q 0.16 tolerated(1) benign(0.005) TCGA-DG-A2KH-01 X 152243079 152243079 C T PNMA6C 3'UTR 0.23 TCGA-DG-A2KH-01 X 153219120 153219140 TGGAGGACACGGTTGTCGTGA - HCFC1 In_Frame_Del p.I1472_S1478del 0.28 TCGA-DG-A2KH-01 X 27839694 27839694 G A MAGEB10 Missense_Mutation p.E91K 0.41 tolerated(0.1) possibly_damaging(0.723) TCGA-DG-A2KH-01 X 44037749 44037749 G C EFHC2 Missense_Mutation p.R605G 0.09 deleterious(0) probably_damaging(0.98) TCGA-DG-A2KH-01 X 73063832 73063832 A G XIST RNA 0.07 TCGA-DG-A2KJ-01 10 100152252 100152252 C G PYROXD2 Silent p.V333V 0.41 TCGA-DG-A2KJ-01 10 112771465 112771465 G A SHOC2 Missense_Mutation p.M546I 0.23 deleterious(0.01) benign(0.393) TCGA-DG-A2KJ-01 10 119044007 119044007 G A PDZD8 Missense_Mutation p.T746I 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-DG-A2KJ-01 10 26800794 26800794 T C APBB1IP Missense_Mutation p.V217A 0.29 tolerated(0.1) benign(0.217) TCGA-DG-A2KJ-01 10 50724908 50724908 C A ERCC6-PGBD3 Missense_Mutation p.D553Y 0.11 deleterious_low_confidence(0) unknown(0) TCGA-DG-A2KJ-01 10 75607064 75607064 C T CAMK2G Silent p.K246K 0.30 TCGA-DG-A2KJ-01 10 85992291 85992291 G A LRIT1 Missense_Mutation p.R422W 0.17 deleterious(0.01) benign(0.28) TCGA-DG-A2KJ-01 10 91497970 91497970 G A KIF20B Silent p.L1084L 0.62 TCGA-DG-A2KJ-01 11 123901252 123901252 C G OR10G8 Missense_Mutation p.S308C 0.24 deleterious(0.04) possibly_damaging(0.503) TCGA-DG-A2KJ-01 11 33891478 33891478 C T LMO2 5'UTR 0.32 TCGA-DG-A2KJ-01 11 46694146 46694146 G A ATG13 3'UTR 0.24 TCGA-DG-A2KJ-01 11 64674219 64674219 G A ATG2A Silent p.L967L 0.26 TCGA-DG-A2KJ-01 11 6555105 6555105 C T DNHD1 Silent p.H900H 0.25 TCGA-DG-A2KJ-01 11 74415650 74415650 G A CHRDL2 Missense_Mutation p.P211L 0.40 tolerated(0.86) benign(0.009) TCGA-DG-A2KJ-01 12 101738384 101738384 G T UTP20 Missense_Mutation p.M1487I 0.36 tolerated(0.08) possibly_damaging(0.858) TCGA-DG-A2KJ-01 12 121757603 121757603 G T ANAPC5 Missense_Mutation p.Q512K 0.30 tolerated(0.32) benign(0.05) TCGA-DG-A2KJ-01 12 123984018 123984018 C T RILPL1 Missense_Mutation p.E176K 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-DG-A2KJ-01 12 124107251 124107251 C T EIF2B1 Missense_Mutation p.V229I 0.47 tolerated(0.13) benign(0.006) TCGA-DG-A2KJ-01 12 18891468 18891468 A C CAPZA3 Missense_Mutation p.K89T 0.46 deleterious(0) probably_damaging(0.957) TCGA-DG-A2KJ-01 12 21644591 21644591 G C RECQL Missense_Mutation p.Q26E 0.12 tolerated(0.65) benign(0.003) TCGA-DG-A2KJ-01 12 25242588 25242588 G A LRMP Silent p.S138S 0.38 TCGA-DG-A2KJ-01 12 45001041 45001041 C T NELL2 Missense_Mutation p.C575Y 0.58 deleterious(0) benign(0.347) TCGA-DG-A2KJ-01 12 46246279 46246279 C T ARID2 Missense_Mutation p.S1458L 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.47) TCGA-DG-A2KJ-01 12 48528526 48528526 C T PFKM Silent p.L292L 0.16 TCGA-DG-A2KJ-01 13 111371908 111371908 G A ING1 Missense_Mutation p.E300K 0.31 tolerated(0.07) probably_damaging(0.939) TCGA-DG-A2KJ-01 13 111932919 111932919 C G ARHGEF7 Missense_Mutation p.N561K 0.42 tolerated(0.33) benign(0.026) TCGA-DG-A2KJ-01 13 49924898 49924898 A T CAB39L Missense_Mutation p.D182E 0.39 deleterious(0) probably_damaging(0.979) TCGA-DG-A2KJ-01 14 51411055 51411055 C G PYGL Missense_Mutation p.E23Q 0.31 deleterious(0.05) benign(0.288) TCGA-DG-A2KJ-01 14 69077883 69077886 AACT - RAD51B Frame_Shift_Del p.T400Sfs*29 0.44 TCGA-DG-A2KJ-01 14 91110501 91110501 C T TTC7B Missense_Mutation p.D548N 0.42 tolerated(0.09) benign(0.062) TCGA-DG-A2KJ-01 15 30008839 30008839 G A TJP1 Missense_Mutation p.S1393L 0.39 tolerated_low_confidence(0.74) benign(0) TCGA-DG-A2KJ-01 15 31042641 31042641 G A ARHGAP11B RNA 0.29 TCGA-DG-A2KJ-01 15 64463044 64463044 C T CSNK1G1 3'UTR 0.19 TCGA-DG-A2KJ-01 15 74865497 74865497 G C ARID3B Missense_Mutation p.E217Q 0.15 tolerated(0.13) probably_damaging(0.999) TCGA-DG-A2KJ-01 16 10788480 10788480 G A TEKT5 Missense_Mutation p.A84V 0.49 deleterious(0.04) benign(0.059) TCGA-DG-A2KJ-01 16 1703045 1703045 G A CRAMP1L Missense_Mutation p.E309K 0.48 deleterious(0.01) benign(0.07) TCGA-DG-A2KJ-01 16 17202581 17202581 C T XYLT1 Missense_Mutation p.A951T 0.34 tolerated(0.05) benign(0.013) TCGA-DG-A2KJ-01 16 29814087 29814087 C A KIF22 Intron 0.18 TCGA-DG-A2KJ-01 16 29814867 29814867 C G KIF22 Nonsense_Mutation p.S516* 0.23 TCGA-DG-A2KJ-01 16 3781397 3781397 G C CREBBP Silent p.L1656L 0.45 TCGA-DG-A2KJ-01 16 70708272 70708272 G A MTSS1L Silent p.F330F 0.31 TCGA-DG-A2KJ-01 16 77822730 77822730 G - VAT1L Frame_Shift_Del p.L53Sfs*28 0.41 TCGA-DG-A2KJ-01 16 88124822 88124822 A T RP11-863P13.4 RNA 0.11 TCGA-DG-A2KJ-01 16 89763259 89763259 T G SPATA2L 3'UTR 0.31 TCGA-DG-A2KJ-01 17 10219260 10219260 A T MYH13 Missense_Mutation p.I1274N 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-DG-A2KJ-01 17 34913007 34913007 G A GGNBP2 Missense_Mutation p.V87I 0.09 tolerated(0.19) benign(0.005) TCGA-DG-A2KJ-01 17 38508602 38508602 G A RARA Missense_Mutation p.R217H 0.32 deleterious(0.04) possibly_damaging(0.886) TCGA-DG-A2KJ-01 17 42745424 42745424 A G C17orf104 Silent p.L715L 0.35 TCGA-DG-A2KJ-01 17 4624255 4624255 A T ARRB2 Missense_Mutation p.D405V 0.39 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KJ-01 17 50212245 50212245 C T CA10 Intron 0.28 TCGA-DG-A2KJ-01 17 73602087 73602087 G A MYO15B Missense_Mutation p.R209H 0.33 deleterious(0.04) benign(0.198) TCGA-DG-A2KJ-01 18 11753933 11753933 G A GNAL Missense_Mutation p.E205K 0.14 deleterious(0.02) benign(0.324) TCGA-DG-A2KJ-01 18 12982572 12982572 C T SEH1L Nonsense_Mutation p.Q273* 0.14 TCGA-DG-A2KJ-01 18 55355706 55355706 G A ATP8B1 Silent p.F418F 0.24 TCGA-DG-A2KJ-01 19 14044141 14044141 G A PODNL1 Missense_Mutation p.R306W 0.37 deleterious(0.02) probably_damaging(0.981) TCGA-DG-A2KJ-01 19 15052447 15052447 C T OR7C2 Silent p.I49I 0.33 TCGA-DG-A2KJ-01 19 15529797 15529797 G A AKAP8L 5'UTR 0.29 TCGA-DG-A2KJ-01 19 35800902 35800902 G A MAG Missense_Mutation p.V453M 0.32 deleterious(0) probably_damaging(0.981) TCGA-DG-A2KJ-01 19 3637461 3637461 G A PIP5K1C Intron 0.47 TCGA-DG-A2KJ-01 19 52725468 52725468 G A PPP2R1A Silent p.Q545Q 0.57 TCGA-DG-A2KJ-01 19 53046547 53046547 G A ZNF808 Missense_Mutation p.E4K 0.28 tolerated(0.08) possibly_damaging(0.899) TCGA-DG-A2KJ-01 19 56952534 56952534 G C ZNF667 Silent p.A610A 0.39 TCGA-DG-A2KJ-01 19 8370025 8370025 G A CD320 Missense_Mutation p.S53L 0.25 deleterious(0.03) benign(0.209) TCGA-DG-A2KJ-01 19 9801313 9801313 G A ZNF812 Missense_Mutation p.S289L 0.11 tolerated(0.08) benign(0.399) TCGA-DG-A2KJ-01 1 10698227 10698234 TTGTATTT - CASZ1 3'UTR 0.88 TCGA-DG-A2KJ-01 1 148346865 148346865 G A NBPF20 Intron 0.08 TCGA-DG-A2KJ-01 1 161600993 161600993 C T FCGR3B 5'UTR 0.49 TCGA-DG-A2KJ-01 1 178389725 178389725 G A RASAL2 Missense_Mutation p.R215Q 0.55 deleterious(0.05) probably_damaging(0.996) TCGA-DG-A2KJ-01 1 204213994 204213994 C T PLEKHA6 Missense_Mutation p.E724K 0.07 deleterious(0.01) possibly_damaging(0.781) TCGA-DG-A2KJ-01 1 212911789 212911789 C G NSL1 Missense_Mutation p.W269C 0.34 tolerated(0.18) benign(0.002) TCGA-DG-A2KJ-01 1 231298805 231298805 C T TRIM67 Silent p.C30C 0.38 TCGA-DG-A2KJ-01 1 36557678 36557678 C T ADPRHL2 Silent p.S228S 0.17 TCGA-DG-A2KJ-01 1 46827251 46827251 C G NSUN4 Silent p.L296L 0.16 TCGA-DG-A2KJ-01 1 70494027 70494027 G A LRRC7 Silent p.P618P 0.29 TCGA-DG-A2KJ-01 1 8422812 8422812 C G RERE Silent p.R611R 0.12 TCGA-DG-A2KJ-01 20 34108897 34108897 C T RP3-477O4.16 3'Flank 0.40 TCGA-DG-A2KJ-01 20 43247075 43247075 G A PKIG 3'UTR 0.47 TCGA-DG-A2KJ-01 20 44472210 44472210 C T ACOT8 Missense_Mutation p.R266Q 0.29 tolerated(0.05) possibly_damaging(0.7) TCGA-DG-A2KJ-01 20 468069 468110 ACAGAAATAGGGGTGCTCCATTGCCTCTCTTGCAGTAAGCCG - CSNK2A1 Splice_Site p.X312_splice 0.63 TCGA-DG-A2KJ-01 21 44592269 44592269 C T CRYAA Missense_Mutation p.S134F 0.14 deleterious(0) probably_damaging(0.991) TCGA-DG-A2KJ-01 22 20114683 20114683 C T RANBP1 3'UTR 0.37 TCGA-DG-A2KJ-01 22 23214156 23214156 G A IGLV4-3 Missense_Mutation p.D105N 0.34 deleterious(0.01) probably_damaging(1) TCGA-DG-A2KJ-01 22 26694977 26694977 G A SEZ6L Missense_Mutation p.R397H 0.28 deleterious(0.03) benign(0.12) TCGA-DG-A2KJ-01 22 35947637 35947637 A G RASD2 Missense_Mutation p.K120R 0.34 deleterious(0.01) probably_damaging(0.951) TCGA-DG-A2KJ-01 22 38875651 38875651 C T KDELR3 Silent p.F82F 0.32 TCGA-DG-A2KJ-01 22 50962501 50962501 G A SCO2 Missense_Mutation p.R114C 0.31 tolerated(0.11) benign(0.24) TCGA-DG-A2KJ-01 2 121748971 121748971 A T GLI2 3'UTR 0.43 TCGA-DG-A2KJ-01 2 162894870 162894870 G T DPP4 Silent p.I185I 0.32 TCGA-DG-A2KJ-01 2 179454613 179454613 C T TTN Silent p.Q20613Q 0.27 TCGA-DG-A2KJ-01 2 192711321 192711321 C A SDPR Missense_Mutation p.V111L 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-DG-A2KJ-01 2 198299729 198299729 C A SF3B1 5'UTR 0.42 TCGA-DG-A2KJ-01 2 39025026 39025026 C A DHX57 3'UTR 0.30 TCGA-DG-A2KJ-01 2 74041117 74041117 C A C2orf78 Missense_Mutation p.P204H 0.32 deleterious(0) probably_damaging(1) TCGA-DG-A2KJ-01 2 89247315 89247315 G A IGKV1-5 5'UTR 0.10 TCGA-DG-A2KJ-01 3 136676851 136676851 C T IL20RB 5'UTR 0.16 TCGA-DG-A2KJ-01 3 148614668 148614668 C T CPA3 3'UTR 0.15 TCGA-DG-A2KJ-01 3 30734916 30734916 C G TGFBR2 3'UTR 0.50 TCGA-DG-A2KJ-01 3 49161680 49161680 G A LAMB2 Missense_Mutation p.R1123W 0.50 deleterious(0) possibly_damaging(0.893) TCGA-DG-A2KJ-01 3 49463690 49463690 G A NICN1 Missense_Mutation p.H102Y 0.55 tolerated(0.16) benign(0.007) TCGA-DG-A2KJ-01 3 93758727 93758727 A T ARL13B Missense_Mutation p.K231N 0.17 deleterious(0.03) benign(0.007) TCGA-DG-A2KJ-01 4 164271557 164271557 G A NPY5R Silent p.L44L 0.06 TCGA-DG-A2KJ-01 4 2698128 2698128 G T FAM193A Missense_Mutation p.M814I 0.21 tolerated(0.26) benign(0.142) TCGA-DG-A2KJ-01 4 36309866 36309866 C T DTHD1 Missense_Mutation p.H491Y 0.09 tolerated(0.6) benign(0.008) TCGA-DG-A2KJ-01 4 80327853 80327853 G C GK2 Missense_Mutation p.A501G 0.12 tolerated(0.25) benign(0.003) TCGA-DG-A2KJ-01 5 110461424 110461424 G T WDR36 Missense_Mutation p.M879I 0.20 tolerated(0.07) possibly_damaging(0.507) TCGA-DG-A2KJ-01 5 131915115 131915115 C T RAD50 Missense_Mutation p.H158Y 0.62 deleterious(0.02) probably_damaging(1) TCGA-DG-A2KJ-01 5 13751303 13751303 G A DNAH5 Missense_Mutation p.P3699S 0.06 possibly_damaging(0.876) TCGA-DG-A2KJ-01 5 147774315 147774315 C T FBXO38 5'UTR 0.61 TCGA-DG-A2KJ-01 5 150657168 150657168 G A SLC36A3 Missense_Mutation p.S441F 0.17 deleterious(0) probably_damaging(0.997) TCGA-DG-A2KJ-01 5 179155788 179155788 C T CANX 3'UTR 0.24 TCGA-DG-A2KJ-01 5 68599750 68599750 G A CCDC125 Silent p.N208N 0.49 TCGA-DG-A2KJ-01 6 109787778 109787778 C T ZBTB24 Splice_Site p.X457_splice 0.12 TCGA-DG-A2KJ-01 6 138613152 138613152 G A KIAA1244 Silent p.A1110A 0.21 TCGA-DG-A2KJ-01 6 26271219 26271219 G A HIST1H3G Missense_Mutation p.R132C 0.55 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-DG-A2KJ-01 6 46803248 46803248 C T MEP1A Silent p.D682D 0.34 TCGA-DG-A2KJ-01 6 74490219 74490219 C T CD109 Nonsense_Mutation p.Q634* 0.11 TCGA-DG-A2KJ-01 6 82458506 82458506 C G FAM46A 3'UTR 0.07 TCGA-DG-A2KJ-01 7 122337793 122337793 G C RNF133 3'UTR 0.33 TCGA-DG-A2KJ-01 7 122342556 122342556 C T RNF148 Silent p.Q83Q 0.17 TCGA-DG-A2KJ-01 7 151877164 151877164 C G KMT2C Missense_Mutation p.K2399N 0.15 benign(0.272) TCGA-DG-A2KJ-01 7 158554216 158554216 C T ESYT2 Missense_Mutation p.E450K 0.41 deleterious(0.04) benign(0.118) TCGA-DG-A2KJ-01 7 27210226 27210226 C A HOXA10 3'UTR 0.32 TCGA-DG-A2KJ-01 7 66274797 66274797 G C KCTD7 3'UTR 0.30 TCGA-DG-A2KJ-01 8 144893392 144893392 C A SCRIB Missense_Mutation p.D344Y 0.08 probably_damaging(1) TCGA-DG-A2KJ-01 8 27886839 27886839 C T NUGGC Missense_Mutation p.E700K 0.48 tolerated(0.35) benign(0.107) TCGA-DG-A2KJ-01 8 3216706 3216706 C T CSMD1 Missense_Mutation p.R1091H 0.34 benign(0.112) TCGA-DG-A2KJ-01 8 39535051 39535051 C T ADAM18 Missense_Mutation p.R543W 0.16 tolerated(0.19) possibly_damaging(0.759) TCGA-DG-A2KJ-01 8 48353055 48353055 G A SPIDR Missense_Mutation p.G350S 0.48 tolerated(0.73) benign(0.02) TCGA-DG-A2KJ-01 8 82667675 82667675 G C CHMP4C Missense_Mutation p.E147Q 0.31 deleterious(0.03) benign(0.285) TCGA-DG-A2KJ-01 8 87479254 87479254 C T WWP1 3'UTR 0.29 TCGA-DG-A2KJ-01 9 112969804 112969804 G A C9orf152 Missense_Mutation p.S19F 0.60 deleterious(0) probably_damaging(0.912) TCGA-DG-A2KJ-01 9 90264842 90264842 G C DAPK1 Missense_Mutation p.E479Q 0.46 deleterious(0.02) probably_damaging(0.988) TCGA-DG-A2KJ-01 9 96428130 96428130 G A PHF2 Silent p.P700P 0.11 TCGA-DG-A2KJ-01 X 155173127 155173127 G A VAMP7 3'UTR 0.42 TCGA-DG-A2KK-01 10 101370574 101370574 C T SLC25A28 3'UTR 0.39 TCGA-DG-A2KK-01 10 102684014 102684014 C G FAM178A Missense_Mutation p.S419C 0.14 tolerated(0.08) probably_damaging(0.922) TCGA-DG-A2KK-01 10 103190136 103190136 C G BTRC Missense_Mutation p.S28C 0.34 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-DG-A2KK-01 10 114710681 114710681 C G TCF7L2 Missense_Mutation p.Q56E 0.48 tolerated(0.56) possibly_damaging(0.467) TCGA-DG-A2KK-01 10 115657899 115657899 G A NHLRC2 Nonsense_Mutation p.W357* 0.06 TCGA-DG-A2KK-01 10 115657900 115657900 G A NHLRC2 Nonsense_Mutation p.W357* 0.06 TCGA-DG-A2KK-01 10 118891763 118891763 G C VAX1 3'Flank 0.13 TCGA-DG-A2KK-01 10 24762885 24762885 G C KIAA1217 Silent p.R525R 0.08 TCGA-DG-A2KK-01 10 30315869 30315869 C T KIAA1462 Missense_Mutation p.E1070K 0.22 tolerated(0.75) benign(0.015) TCGA-DG-A2KK-01 10 30315873 30315873 C G KIAA1462 Missense_Mutation p.L1068F 0.26 tolerated(0.37) benign(0.052) TCGA-DG-A2KK-01 10 34558760 34558760 C G PARD3 Missense_Mutation p.D1085H 0.40 tolerated(0.12) probably_damaging(0.933) TCGA-DG-A2KK-01 10 47088176 47088176 G C NPY4R 3'UTR 0.13 TCGA-DG-A2KK-01 10 48414295 48414295 G A GDF2 Silent p.F191F 0.38 TCGA-DG-A2KK-01 10 61719652 61719652 C T C10orf40 5'UTR 0.42 TCGA-DG-A2KK-01 10 69682816 69682816 C A HERC4 Nonsense_Mutation p.E1016* 0.36 TCGA-DG-A2KK-01 10 72100450 72100450 C T LRRC20 Missense_Mutation p.E31K 0.15 tolerated(0.15) benign(0.305) TCGA-DG-A2KK-01 10 72538287 72538287 G A TBATA Intron 0.07 TCGA-DG-A2KK-01 10 75558858 75558858 G A ZSWIM8 Nonsense_Mutation p.W1425* 0.36 TCGA-DG-A2KK-01 10 76924411 76924411 G C SAMD8 Missense_Mutation p.R196T 0.37 tolerated(0.37) benign(0.379) TCGA-DG-A2KK-01 10 86131443 86131443 C T CCSER2 Missense_Mutation p.S212F 0.39 deleterious(0.01) possibly_damaging(0.61) TCGA-DG-A2KK-01 10 90676542 90676542 C T STAMBPL1 Nonsense_Mutation p.Q337* 0.07 TCGA-DG-A2KK-01 10 91359024 91359024 C G PANK1 Missense_Mutation p.R432T 0.27 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 10 98155629 98155629 C T TLL2 Intron 0.36 TCGA-DG-A2KK-01 10 98716169 98716169 G A LCOR 3'UTR 0.50 TCGA-DG-A2KK-01 11 116728696 116728696 G C SIK3 Nonsense_Mutation p.S1056* 0.51 TCGA-DG-A2KK-01 11 1264858 1264858 C G MUC5B Missense_Mutation p.P2250A 0.08 benign(0.275) TCGA-DG-A2KK-01 11 1265813 1265813 C T MUC5B Missense_Mutation p.S2568F 0.39 unknown(0) TCGA-DG-A2KK-01 11 1268629 1268629 C G MUC5B Missense_Mutation p.P3507A 0.51 unknown(0) TCGA-DG-A2KK-01 11 1271163 1271163 C G MUC5B Missense_Mutation p.I4351M 0.31 benign(0.012) TCGA-DG-A2KK-01 11 1651060 1651060 C G KRTAP5-5 5'UTR 0.10 TCGA-DG-A2KK-01 11 1892436 1892436 G A LSP1 Intron 0.38 TCGA-DG-A2KK-01 11 2005521 2005521 G A MRPL23-AS1 RNA 0.27 TCGA-DG-A2KK-01 11 20127225 20127225 C T NAV2 Missense_Mutation p.H2324Y 0.34 deleterious(0) probably_damaging(0.956) TCGA-DG-A2KK-01 11 32720835 32720835 C G CCDC73 Missense_Mutation p.E118Q 0.43 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 11 35275512 35275512 C A SLC1A2 3'UTR 0.43 TCGA-DG-A2KK-01 11 430149 430149 G A ANO9 Silent p.L235L 0.29 TCGA-DG-A2KK-01 11 46397894 46397894 G C DGKZ Missense_Mutation p.G891A 0.40 tolerated(0.71) benign(0.001) TCGA-DG-A2KK-01 11 47611686 47611686 G A C1QTNF4 Missense_Mutation p.P226L 0.50 deleterious(0) probably_damaging(0.948) TCGA-DG-A2KK-01 11 58385252 58385252 C G ZFP91 3'UTR 0.27 TCGA-DG-A2KK-01 11 62554156 62554156 C T TAF6L Silent p.L419L 0.30 TCGA-DG-A2KK-01 11 64436066 64436066 G A NRXN2 Missense_Mutation p.S403L 0.46 tolerated(0.09) benign(0.069) TCGA-DG-A2KK-01 11 64519472 64519472 G A PYGM Silent p.F564F 0.38 TCGA-DG-A2KK-01 11 65124381 65124381 G A TIGD3 Missense_Mutation p.G368S 0.35 tolerated(0.18) benign(0.024) TCGA-DG-A2KK-01 11 66082697 66082697 G C CD248 Missense_Mutation p.S601C 0.31 tolerated(0.05) benign(0.258) TCGA-DG-A2KK-01 11 709426 709426 G C EPS8L2 Missense_Mutation p.V7L 0.37 tolerated_low_confidence(0.46) benign(0.001) TCGA-DG-A2KK-01 11 77820512 77820512 G A ALG8 Silent p.L338L 0.60 TCGA-DG-A2KK-01 11 82535964 82535964 G A PRCP Missense_Mutation p.A513V 0.70 tolerated(0.56) benign(0.001) TCGA-DG-A2KK-01 12 100567160 100567160 C G RP11-175P13.3 RNA 0.33 TCGA-DG-A2KK-01 12 101779861 101779861 A G UTP20 Missense_Mutation p.Q2773R 0.09 deleterious(0.04) benign(0.097) TCGA-DG-A2KK-01 12 104140424 104140424 G A STAB2 Silent p.K2062K 0.43 TCGA-DG-A2KK-01 12 109872885 109872885 G T MYO1H Nonsense_Mutation p.E687* 0.37 TCGA-DG-A2KK-01 12 109898564 109898564 G A KCTD10 Silent p.L88L 0.33 TCGA-DG-A2KK-01 12 109947443 109947443 C T UBE3B Silent p.F555F 0.42 TCGA-DG-A2KK-01 12 109947445 109947445 A T UBE3B Missense_Mutation p.K556I 0.43 deleterious(0.03) benign(0.258) TCGA-DG-A2KK-01 12 130842072 130842072 C T PIWIL1 Nonsense_Mutation p.Q547* 0.44 TCGA-DG-A2KK-01 12 19672541 19672541 G T AEBP2 3'Flank 0.37 TCGA-DG-A2KK-01 12 21695523 21695523 C G GYS2 Missense_Mutation p.E518Q 0.40 deleterious(0) probably_damaging(0.992) TCGA-DG-A2KK-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.52 deleterious(0.04) possibly_damaging(0.506) TCGA-DG-A2KK-01 12 30881633 30881633 G A CAPRIN2 Silent p.L577L 0.09 TCGA-DG-A2KK-01 12 49430960 49430960 C T KMT2D Silent p.P3393P 0.42 TCGA-DG-A2KK-01 12 49522590 49522590 G A TUBA1B Silent p.F169F 0.39 TCGA-DG-A2KK-01 12 50036337 50036337 G A FMNL3 3'UTR 0.36 TCGA-DG-A2KK-01 12 52713041 52713041 G C KRT83 Missense_Mutation p.I164M 0.39 deleterious(0) possibly_damaging(0.523) TCGA-DG-A2KK-01 12 53009988 53009988 C T KRT73 Silent p.L208L 0.05 TCGA-DG-A2KK-01 12 57592445 57592445 G A LRP1 Missense_Mutation p.R3223H 0.41 probably_damaging(0.999) TCGA-DG-A2KK-01 12 71972663 71972663 C G LGR5 Missense_Mutation p.H454D 0.41 tolerated(0.23) benign(0.002) TCGA-DG-A2KK-01 12 80189449 80189449 C T PPP1R12A Missense_Mutation p.R851K 0.05 deleterious(0.01) probably_damaging(0.983) TCGA-DG-A2KK-01 12 95397373 95397373 G A NDUFA12 Silent p.F28F 0.29 TCGA-DG-A2KK-01 13 109793204 109793204 C G MYO16 Silent p.L1526L 0.64 TCGA-DG-A2KK-01 13 113656128 113656128 C T MCF2L Intron 0.38 TCGA-DG-A2KK-01 13 23905671 23905671 G C SACS Missense_Mutation p.S4115C 0.23 probably_damaging(0.993) TCGA-DG-A2KK-01 13 24334330 24334330 G A MIPEP Silent p.L625L 0.35 TCGA-DG-A2KK-01 13 33703335 33703335 G C STARD13 Silent p.V493V 0.38 TCGA-DG-A2KK-01 13 43810830 43810830 C G ENOX1 Missense_Mutation p.E552D 0.06 tolerated(0.39) benign(0.007) TCGA-DG-A2KK-01 13 67800591 67800591 A C PCDH9 Missense_Mutation p.V661G 0.45 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KK-01 13 73357704 73357704 G A PIBF1 Missense_Mutation p.D33N 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-DG-A2KK-01 13 73651221 73651221 G T KLF5 3'UTR 0.23 TCGA-DG-A2KK-01 13 78317157 78317157 G A SLAIN1 Intron 0.41 TCGA-DG-A2KK-01 13 96439260 96439260 G C DNAJC3 Splice_Site p.X403_splice 0.44 TCGA-DG-A2KK-01 13 99537262 99537262 G A DOCK9 Missense_Mutation p.S782L 0.06 tolerated(0.1) benign(0.063) TCGA-DG-A2KK-01 14 102478445 102478445 G A DYNC1H1 Silent p.L2284L 0.07 TCGA-DG-A2KK-01 14 102478721 102478721 G C DYNC1H1 Missense_Mutation p.E2310Q 0.06 possibly_damaging(0.831) TCGA-DG-A2KK-01 14 106090954 106090954 G A IGHG4 Silent p.D281D 0.27 TCGA-DG-A2KK-01 14 20586347 20586347 C T OR4K17 Missense_Mutation p.P261L 0.44 deleterious(0.01) benign(0.004) TCGA-DG-A2KK-01 14 22592208 22592208 G C TRAV26-1 Missense_Mutation p.R98T 0.39 deleterious(0.02) benign(0.087) TCGA-DG-A2KK-01 14 23467958 23467958 C T C14orf93 Missense_Mutation p.R92H 0.44 deleterious_low_confidence(0.01) benign(0.252) TCGA-DG-A2KK-01 14 30046497 30046497 C T PRKD1 Missense_Mutation p.E896K 0.35 tolerated_low_confidence(0.68) benign(0.002) TCGA-DG-A2KK-01 14 31061590 31061590 G A G2E3 Missense_Mutation p.R100Q 0.34 tolerated(0.19) probably_damaging(0.996) TCGA-DG-A2KK-01 14 44976193 44976193 G C FSCB 5'UTR 0.41 TCGA-DG-A2KK-01 14 45403363 45403363 C G KLHL28 Missense_Mutation p.G433A 0.10 deleterious(0) probably_damaging(0.938) TCGA-DG-A2KK-01 14 52194648 52194648 G A FRMD6 Silent p.Q590Q 0.45 TCGA-DG-A2KK-01 14 57267539 57267539 C G OTX2 3'UTR 0.31 TCGA-DG-A2KK-01 14 64151495 64151495 G A SGPP1 3'UTR 0.34 TCGA-DG-A2KK-01 14 64194288 64194288 G T SGPP1 Missense_Mutation p.N125K 0.18 deleterious(0) possibly_damaging(0.874) TCGA-DG-A2KK-01 14 64532300 64532300 G C SYNE2 Missense_Mutation p.E3455Q 0.44 benign(0.187) TCGA-DG-A2KK-01 14 69261934 69261934 G C ZFP36L1 5'Flank 0.24 TCGA-DG-A2KK-01 14 69726943 69726943 G A GALNT16 5'UTR 0.45 TCGA-DG-A2KK-01 14 73563725 73563725 C T RBM25 Missense_Mutation p.R216C 0.23 probably_damaging(0.982) TCGA-DG-A2KK-01 14 78142096 78142096 C T ALKBH1 Missense_Mutation p.E215K 0.33 deleterious(0) possibly_damaging(0.902) TCGA-DG-A2KK-01 14 92126204 92126204 C G CATSPERB Missense_Mutation p.G470A 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-DG-A2KK-01 14 95556868 95556868 G C DICER1 Silent p.L1912L 0.41 TCGA-DG-A2KK-01 14 96756851 96756851 C G ATG2B Missense_Mutation p.Q1926H 0.40 deleterious(0) probably_damaging(0.947) TCGA-DG-A2KK-01 15 25436571 25436571 G C SNORD115-12 RNA 0.10 TCGA-DG-A2KK-01 15 26792706 26792706 C G GABRB3 3'UTR 0.25 TCGA-DG-A2KK-01 15 31340097 31340097 T C TRPM1 Missense_Mutation p.K557E 0.11 deleterious(0.01) benign(0.371) TCGA-DG-A2KK-01 15 34158714 34158714 G C AVEN 3'UTR 0.81 TCGA-DG-A2KK-01 15 40630805 40630805 C G C15orf52 Silent p.G192G 0.06 TCGA-DG-A2KK-01 15 43318810 43318810 C G UBR1 Silent p.L828L 0.09 TCGA-DG-A2KK-01 15 43821418 43821418 G A MAP1A Missense_Mutation p.E2583K 0.67 probably_damaging(0.996) TCGA-DG-A2KK-01 15 48796084 48796084 G C FBN1 Missense_Mutation p.I671M 0.76 benign(0.035) TCGA-DG-A2KK-01 15 50294401 50294401 G C ATP8B4 Nonsense_Mutation p.S152* 0.86 TCGA-DG-A2KK-01 15 57815711 57815711 G C CGNL1 Missense_Mutation p.E914Q 0.07 deleterious(0.01) benign(0.309) TCGA-DG-A2KK-01 15 65620264 65620264 C G IGDCC3 3'UTR 0.85 TCGA-DG-A2KK-01 15 70960493 70960493 G A UACA Missense_Mutation p.L844F 0.47 deleterious(0) possibly_damaging(0.891) TCGA-DG-A2KK-01 15 74421382 74421382 C T RP11-247C2.2 Silent p.S17S 0.62 TCGA-DG-A2KK-01 15 79382847 79382847 C T RASGRF1 5'UTR 0.79 TCGA-DG-A2KK-01 15 90233900 90233900 C G PEX11A 5'UTR 0.16 TCGA-DG-A2KK-01 16 167375 167375 C T NPRL3 Splice_Site p.X107_splice 0.40 TCGA-DG-A2KK-01 16 1774567 1774567 G C MAPK8IP3 Missense_Mutation p.E110Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-DG-A2KK-01 16 2278434 2278434 T C E4F1 Silent p.F73F 0.43 TCGA-DG-A2KK-01 16 2336854 2336854 G C ABCA3 Missense_Mutation p.A1040G 0.43 tolerated(0.1) benign(0.139) TCGA-DG-A2KK-01 16 24226666 24226666 C G PRKCB 3'UTR 0.40 TCGA-DG-A2KK-01 16 29816269 29816269 C T KIF22 Silent p.L604L 0.36 TCGA-DG-A2KK-01 16 31724683 31724683 C G ZNF720 5'UTR 0.40 TCGA-DG-A2KK-01 16 337447 337447 C T AXIN1 3'UTR 0.23 TCGA-DG-A2KK-01 16 5289856 5289856 C G RP11-420N3.2 RNA 0.42 TCGA-DG-A2KK-01 16 57091992 57091992 G A NLRC5 Silent p.L1254L 0.33 TCGA-DG-A2KK-01 16 61855002 61855002 G A CDH8 Missense_Mutation p.S284L 0.36 tolerated(0.1) benign(0.157) TCGA-DG-A2KK-01 16 66437934 66437934 G A CDH5 3'UTR 0.62 TCGA-DG-A2KK-01 16 66997079 66997079 C G CES3 Intron 0.37 TCGA-DG-A2KK-01 16 66997226 66997226 C G CES3 Nonsense_Mutation p.S76* 0.42 TCGA-DG-A2KK-01 16 70834762 70834762 G A VAC14 Silent p.I14I 0.47 TCGA-DG-A2KK-01 16 71898131 71898131 C G ZNF821 Missense_Mutation p.L109F 0.30 tolerated(0.23) possibly_damaging(0.478) TCGA-DG-A2KK-01 16 839552 839552 C T CHTF18 Missense_Mutation p.S148L 0.34 tolerated(0.89) benign(0.001) TCGA-DG-A2KK-01 16 84900605 84900605 G T CRISPLD2 Missense_Mutation p.R271I 0.36 tolerated(0.14) possibly_damaging(0.541) TCGA-DG-A2KK-01 16 86614631 86614631 G A FOXL1 3'UTR 0.21 TCGA-DG-A2KK-01 17 10534957 10534957 C T MYH3 Missense_Mutation p.E1753K 0.43 deleterious(0) benign(0.136) TCGA-DG-A2KK-01 17 1558693 1558693 C T PRPF8 Missense_Mutation p.E1980K 0.36 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 17 17716720 17716720 C T SREBF1 Missense_Mutation p.R1089H 0.40 tolerated(0.55) possibly_damaging(0.633) TCGA-DG-A2KK-01 17 18183876 18183876 T C TOP3A Silent p.P706P 0.33 TCGA-DG-A2KK-01 17 26125838 26125838 C G NOS2 5'UTR 0.33 TCGA-DG-A2KK-01 17 26902544 26902544 G C ALDOC Missense_Mutation p.H3D 0.25 deleterious(0.05) benign(0.01) TCGA-DG-A2KK-01 17 26976193 26976193 G C SDF2 Missense_Mutation p.F150L 0.33 tolerated(0.73) benign(0.04) TCGA-DG-A2KK-01 17 28022510 28022510 G A SSH2 Silent p.F81F 0.43 TCGA-DG-A2KK-01 17 28795426 28795426 C A CPD 3'UTR 0.09 TCGA-DG-A2KK-01 17 29631673 29631673 C T EVI2B Missense_Mutation p.D319N 0.04 deleterious(0.03) possibly_damaging(0.908) TCGA-DG-A2KK-01 17 35822181 35822181 G C TADA2A Splice_Site p.X223_splice 0.41 TCGA-DG-A2KK-01 17 36485791 36485791 C T GPR179 Missense_Mutation p.G1221R 0.47 tolerated(0.12) benign(0.053) TCGA-DG-A2KK-01 17 36884915 36884915 G C MLLT6 3'UTR 0.42 TCGA-DG-A2KK-01 17 40120646 40120646 C T CNP Silent p.L188L 0.45 TCGA-DG-A2KK-01 17 40467764 40467764 C G STAT3 Nonstop_Mutation p.*771Sext*65 0.32 TCGA-DG-A2KK-01 17 41001224 41001224 G C AOC2 Silent p.L570L 0.35 TCGA-DG-A2KK-01 17 4436614 4436614 C T SPNS2 Missense_Mutation p.R389C 0.36 deleterious(0.02) benign(0.066) TCGA-DG-A2KK-01 17 45490240 45490240 G A EFCAB13 Missense_Mutation p.E794K 0.38 tolerated(0.08) possibly_damaging(0.791) TCGA-DG-A2KK-01 17 45923038 45923038 G C SP6 3'UTR 0.32 TCGA-DG-A2KK-01 17 47329722 47329722 C T RP1-62O9.3 RNA 0.37 TCGA-DG-A2KK-01 17 4851665 4851665 C G PFN1 Missense_Mutation p.D9H 0.06 tolerated(0.08) benign(0.002) TCGA-DG-A2KK-01 17 5329587 5329587 G C RPAIN Missense_Mutation p.V153L 0.38 tolerated(0.87) benign(0.004) TCGA-DG-A2KK-01 17 57270979 57270979 C G PRR11 Missense_Mutation p.L177V 0.09 tolerated(0.48) benign(0.022) TCGA-DG-A2KK-01 17 61958007 61958007 G A GH2 Missense_Mutation p.S194L 0.39 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-DG-A2KK-01 17 68128780 68128780 C T KCNJ16 Silent p.F184F 0.12 TCGA-DG-A2KK-01 17 71193179 71193179 G A COG1 Missense_Mutation p.R234K 0.36 deleterious(0) possibly_damaging(0.872) TCGA-DG-A2KK-01 17 7190137 7190137 C T SLC2A4 3'UTR 0.43 TCGA-DG-A2KK-01 17 7228120 7228120 G C NEURL4 Missense_Mutation p.S604C 0.09 deleterious(0) possibly_damaging(0.447) TCGA-DG-A2KK-01 17 74023322 74023322 G A EVPL 5'UTR 0.37 TCGA-DG-A2KK-01 17 74078000 74078000 C T ZACN Silent p.L306L 0.29 TCGA-DG-A2KK-01 17 74078118 74078118 C T ZACN Missense_Mutation p.H346Y 0.39 tolerated(0.29) benign(0.024) TCGA-DG-A2KK-01 17 74395048 74395048 C T UBE2O Silent p.T551T 0.39 TCGA-DG-A2KK-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.33 deleterious(0) probably_damaging(0.985) TCGA-DG-A2KK-01 17 76116778 76116778 G A TMC6 Silent p.F557F 0.41 TCGA-DG-A2KK-01 17 78269550 78269550 C G RNF213 Nonsense_Mutation p.S650* 0.43 TCGA-DG-A2KK-01 17 78269596 78269596 C T RNF213 Silent p.I665I 0.44 TCGA-DG-A2KK-01 17 79514520 79514520 C T C17orf70 Missense_Mutation p.E530K 0.28 deleterious(0.02) benign(0.189) TCGA-DG-A2KK-01 17 79514800 79514800 C G C17orf70 Intron 0.06 TCGA-DG-A2KK-01 17 79954696 79954696 C T ASPSCR1 Missense_Mutation p.P303S 0.35 tolerated(0.42) unknown(0) TCGA-DG-A2KK-01 17 80022077 80022077 C G DUS1L Missense_Mutation p.A91P 0.07 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KK-01 17 80022092 80022092 C T DUS1L Missense_Mutation p.E86K 0.09 tolerated(0.24) benign(0.217) TCGA-DG-A2KK-01 17 80022753 80022753 C T DUS1L Silent p.R61R 0.11 TCGA-DG-A2KK-01 17 9559768 9559768 G A USP43 Missense_Mutation p.D185N 0.33 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KK-01 17 9694602 9694602 C T DHRS7C 5'UTR 0.50 TCGA-DG-A2KK-01 18 11884235 11884235 G C MPPE1 3'UTR 0.56 TCGA-DG-A2KK-01 18 13018516 13018516 C G CEP192 Nonsense_Mutation p.S276* 0.05 TCGA-DG-A2KK-01 18 25565688 25565688 G A CDH2 Silent p.I593I 0.24 TCGA-DG-A2KK-01 18 42456540 42456540 C G SETBP1 Intron 0.44 TCGA-DG-A2KK-01 18 44140130 44140130 C T LOXHD1 5'Flank 0.40 TCGA-DG-A2KK-01 18 52899837 52899837 C T TCF4 Missense_Mutation p.E620K 0.36 tolerated(0.64) possibly_damaging(0.661) TCGA-DG-A2KK-01 18 5291062 5291062 C T ZBTB14 Missense_Mutation p.R382K 0.33 tolerated(1) benign(0.444) TCGA-DG-A2KK-01 18 55273952 55273952 G A NARS Silent p.L345L 0.44 TCGA-DG-A2KK-01 18 56653563 56653563 C A ZNF532 3'UTR 0.41 TCGA-DG-A2KK-01 18 61310705 61310705 G A SERPINB4 Missense_Mutation p.S36L 0.37 deleterious(0.02) possibly_damaging(0.525) TCGA-DG-A2KK-01 18 72223680 72223680 C T CNDP1 Silent p.L44L 0.31 TCGA-DG-A2KK-01 18 74154300 74154300 C G ZNF516 Missense_Mutation p.E237D 0.11 deleterious(0.03) possibly_damaging(0.832) TCGA-DG-A2KK-01 18 74587576 74587576 C T ZNF236 Nonsense_Mutation p.Q264* 0.32 TCGA-DG-A2KK-01 18 74649142 74649142 C A ZNF236 Nonsense_Mutation p.S1540* 0.35 TCGA-DG-A2KK-01 18 9954278 9954278 C T VAPA 3'UTR 0.40 TCGA-DG-A2KK-01 19 1056231 1056231 G T ABCA7 Missense_Mutation p.D1469Y 0.41 tolerated(0.06) possibly_damaging(0.736) TCGA-DG-A2KK-01 19 10742318 10742318 C T SLC44A2 Silent p.F173F 0.41 TCGA-DG-A2KK-01 19 12868588 12868588 G T BEST2 Silent p.P409P 0.38 TCGA-DG-A2KK-01 19 12978584 12978584 G C MAST1 Missense_Mutation p.E787Q 0.44 tolerated_low_confidence(0.06) benign(0.291) TCGA-DG-A2KK-01 19 1497174 1497174 C T REEP6 Silent p.V173V 0.32 TCGA-DG-A2KK-01 19 15839584 15839584 C G OR10H2 Missense_Mutation p.S244C 0.42 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 19 15839690 15839690 C T OR10H2 Silent p.Y279Y 0.42 TCGA-DG-A2KK-01 19 16243708 16243708 A T RAB8A 3'UTR 0.12 TCGA-DG-A2KK-01 19 16758009 16758009 G C SMIM7 3'UTR 0.36 TCGA-DG-A2KK-01 19 19312382 19312382 G C NR2C2AP 3'UTR 0.57 TCGA-DG-A2KK-01 19 19312616 19312616 C T RFXANK 3'UTR 0.35 TCGA-DG-A2KK-01 19 19649220 19649220 G A CILP2 Missense_Mutation p.R21Q 0.33 tolerated_low_confidence(0.06) benign(0.003) TCGA-DG-A2KK-01 19 1969741 1969741 C T CSNK1G2 5'UTR 0.38 TCGA-DG-A2KK-01 19 20807664 20807664 G C ZNF626 Missense_Mutation p.P340R 0.08 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 19 21606431 21606431 G T ZNF493 Nonsense_Mutation p.E324* 0.36 TCGA-DG-A2KK-01 19 24010669 24010669 C T RPSAP58 Missense_Mutation p.P236S 0.56 deleterious(0.02) benign(0.289) TCGA-DG-A2KK-01 19 2794766 2794766 G C THOP1 Missense_Mutation p.Q78H 0.35 deleterious(0.04) possibly_damaging(0.654) TCGA-DG-A2KK-01 19 34857702 34857702 C T GPI Silent p.G115G 0.48 TCGA-DG-A2KK-01 19 3590645 3590645 G A GIPC3 3'UTR 0.30 TCGA-DG-A2KK-01 19 3590753 3590753 G A GIPC3 3'UTR 0.20 TCGA-DG-A2KK-01 19 39416865 39416865 C T SARS2 Missense_Mutation p.E115K 0.26 tolerated(0.29) benign(0) TCGA-DG-A2KK-01 19 40739396 40739396 C T AKT2 3'UTR 0.10 TCGA-DG-A2KK-01 19 42381419 42381419 C G CD79A Missense_Mutation p.I15M 0.42 tolerated(0.17) possibly_damaging(0.595) TCGA-DG-A2KK-01 19 45162162 45162162 C T PVR Missense_Mutation p.P382S 0.35 tolerated(1) benign(0.002) TCGA-DG-A2KK-01 19 45851407 45851407 G A KLC3 Silent p.A256A 0.41 TCGA-DG-A2KK-01 19 46201892 46201892 C T QPCTL Missense_Mutation p.R241W 0.14 deleterious(0) probably_damaging(0.992) TCGA-DG-A2KK-01 19 47861120 47861120 C G DHX34 Intron 0.56 TCGA-DG-A2KK-01 19 50498170 50498170 C T VRK3 Silent p.L257L 0.29 TCGA-DG-A2KK-01 19 50837329 50837329 C G KCNC3 5'Flank 0.48 TCGA-DG-A2KK-01 19 50940944 50940944 G A MYBPC2 Missense_Mutation p.E181K 0.35 deleterious(0.04) possibly_damaging(0.65) TCGA-DG-A2KK-01 19 51914283 51914283 C G SIGLEC10 3'UTR 0.07 TCGA-DG-A2KK-01 19 53770598 53770598 G A VN1R4 Silent p.I107I 0.47 TCGA-DG-A2KK-01 19 55898086 55898086 G C RPL28 Intron 0.34 TCGA-DG-A2KK-01 19 56459460 56459460 C T NLRP8 Silent p.L64L 0.52 TCGA-DG-A2KK-01 19 57640514 57640514 G C USP29 Silent p.V157V 0.36 TCGA-DG-A2KK-01 19 58773505 58773505 G C ZNF544 Missense_Mutation p.Q511H 0.31 tolerated(0.13) benign(0.419) TCGA-DG-A2KK-01 19 6743520 6743520 G C TRIP10 Missense_Mutation p.E142Q 0.41 deleterious(0) benign(0.397) TCGA-DG-A2KK-01 19 7710138 7710138 C T STXBP2 Silent p.H434H 0.44 TCGA-DG-A2KK-01 19 9003293 9003293 C T MUC16 Missense_Mutation p.R13381K 0.36 probably_damaging(0.999) TCGA-DG-A2KK-01 19 9014186 9014186 G C MUC16 Missense_Mutation p.S12821C 0.41 probably_damaging(0.992) TCGA-DG-A2KK-01 1 109780429 109780429 T C SARS Silent p.H488H 0.41 TCGA-DG-A2KK-01 1 11116762 11116762 G A SRM Missense_Mutation p.S145F 0.34 deleterious(0.04) benign(0.035) TCGA-DG-A2KK-01 1 112525124 112525124 G C KCND3 Missense_Mutation p.F75L 0.06 tolerated(0.06) benign(0.015) TCGA-DG-A2KK-01 1 112525177 112525177 G A KCND3 Silent p.L58L 0.39 TCGA-DG-A2KK-01 1 113269456 113269456 G C FAM19A3 3'UTR 0.50 TCGA-DG-A2KK-01 1 114240276 114240276 G C PHTF1 3'UTR 0.39 TCGA-DG-A2KK-01 1 115259567 115259567 C G CSDE1 3'UTR 0.29 TCGA-DG-A2KK-01 1 116382972 116382972 C A NHLH2 5'UTR 0.57 TCGA-DG-A2KK-01 1 12049379 12049379 G A MFN2 Missense_Mutation p.E52K 0.33 deleterious(0) probably_damaging(0.986) TCGA-DG-A2KK-01 1 12359381 12359381 G A VPS13D Silent p.L2052L 0.31 TCGA-DG-A2KK-01 1 12401839 12401839 G C VPS13D Missense_Mutation p.E2877Q 0.45 benign(0.064) TCGA-DG-A2KK-01 1 145075749 145075749 T A PDE4DIP Silent p.R38R 0.09 TCGA-DG-A2KK-01 1 148346972 148346972 C G NBPF20 5'UTR 0.35 TCGA-DG-A2KK-01 1 150485845 150485845 C T ECM1 Silent p.L536L 0.54 TCGA-DG-A2KK-01 1 151667419 151667419 C G SNX27 3'UTR 0.41 TCGA-DG-A2KK-01 1 152186633 152186633 G C HRNR Missense_Mutation p.S2491C 0.12 unknown(0) TCGA-DG-A2KK-01 1 153920325 153920325 C G CRTC2 3'UTR 0.34 TCGA-DG-A2KK-01 1 155582326 155582326 G A MSTO1 Missense_Mutation p.E311K 0.08 tolerated(0.35) benign(0.001) TCGA-DG-A2KK-01 1 155642494 155642494 G C YY1AP1 Missense_Mutation p.S285C 0.04 deleterious(0.02) probably_damaging(1) TCGA-DG-A2KK-01 1 156824069 156824069 C G INSRR Missense_Mutation p.E38Q 0.50 deleterious(0.05) benign(0.34) TCGA-DG-A2KK-01 1 158064940 158064940 G A KIRREL 3'UTR 0.17 TCGA-DG-A2KK-01 1 158548787 158548787 G C OR10X1 Missense_Mutation p.I301M 0.49 tolerated(0.5) benign(0.027) TCGA-DG-A2KK-01 1 15892468 15892468 C T DNAJC16 Silent p.F551F 0.34 TCGA-DG-A2KK-01 1 159901343 159901343 G C IGSF9 Silent p.L471L 0.36 TCGA-DG-A2KK-01 1 160397505 160397505 C G VANGL2 3'UTR 0.58 TCGA-DG-A2KK-01 1 16054080 16054080 G A PLEKHM2 Missense_Mutation p.E505K 0.41 tolerated_low_confidence(0.21) benign(0.14) TCGA-DG-A2KK-01 1 162469974 162469974 G A UHMK1 Nonsense_Mutation p.W166* 0.43 TCGA-DG-A2KK-01 1 162569085 162569085 A G UAP1 Missense_Mutation p.K484E 0.36 deleterious(0.02) benign(0.064) TCGA-DG-A2KK-01 1 16451266 16451266 C T EPHA2 3'UTR 0.54 TCGA-DG-A2KK-01 1 16460102 16460102 C A EPHA2 Splice_Site p.X580_splice 0.36 TCGA-DG-A2KK-01 1 16475389 16475389 G C EPHA2 Missense_Mutation p.R103G 0.32 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 1 166888559 166888559 G A ILDR2 3'UTR 0.46 TCGA-DG-A2KK-01 1 169806079 169806079 C T C1orf112 Silent p.I517I 0.37 TCGA-DG-A2KK-01 1 169823722 169823722 G A SCYL3 Missense_Mutation p.P620S 0.35 tolerated(0.39) benign(0.009) TCGA-DG-A2KK-01 1 171165850 171165850 C T FMO2 Silent p.V128V 0.35 TCGA-DG-A2KK-01 1 172413191 172413191 G A PIGC 5'UTR 0.47 TCGA-DG-A2KK-01 1 174417843 174417843 C T GPR52 Silent p.L198L 0.24 TCGA-DG-A2KK-01 1 177250105 177250105 C G BRINP2 Missense_Mutation p.S598C 0.27 deleterious(0) probably_damaging(0.996) TCGA-DG-A2KK-01 1 179012905 179012905 C T FAM20B 5'UTR 0.33 TCGA-DG-A2KK-01 1 179620146 179620146 C G TDRD5 Missense_Mutation p.H649D 0.39 tolerated(0.3) benign(0.061) TCGA-DG-A2KK-01 1 179965887 179965887 G A CEP350 Missense_Mutation p.D199N 0.14 probably_damaging(1) TCGA-DG-A2KK-01 1 181453069 181453069 C T CACNA1E Silent p.F63F 0.37 TCGA-DG-A2KK-01 1 182812469 182812469 C A DHX9 Missense_Mutation p.S51Y 0.48 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 1 186057774 186057774 G A HMCN1 Missense_Mutation p.G3205E 0.54 probably_damaging(1) TCGA-DG-A2KK-01 1 186273976 186273978 TCT - PRG4 In_Frame_Del p.S177del 0.28 TCGA-DG-A2KK-01 1 19561705 19561705 C T EMC1 Missense_Mutation p.E451K 0.38 tolerated(0.12) benign(0.359) TCGA-DG-A2KK-01 1 202702961 202702961 G C KDM5B Silent p.L1159L 0.37 TCGA-DG-A2KK-01 1 205031412 205031412 G A CNTN2 Intron 0.29 TCGA-DG-A2KK-01 1 214705717 214705717 G C PTPN14 Intron 0.38 TCGA-DG-A2KK-01 1 216380728 216380728 G C USH2A Missense_Mutation p.S1068C 0.47 probably_damaging(0.91) TCGA-DG-A2KK-01 1 223567621 223567621 G A C1orf65 Silent p.K268K 0.39 TCGA-DG-A2KK-01 1 232534164 232534164 C T SIPA1L2 3'UTR 0.49 TCGA-DG-A2KK-01 1 233112143 233112143 C A NTPCR Intron 0.46 TCGA-DG-A2KK-01 1 235506885 235506885 G A GGPS1 3'UTR 0.41 TCGA-DG-A2KK-01 1 23724052 23724052 G C TCEA3 Nonsense_Mutation p.S217* 0.17 TCGA-DG-A2KK-01 1 237777871 237777871 G A RYR2 Missense_Mutation p.E1815K 0.37 benign(0.288) TCGA-DG-A2KK-01 1 241032132 241032132 C G RGS7 Missense_Mutation p.Q157H 0.44 tolerated(0.1) probably_damaging(0.992) TCGA-DG-A2KK-01 1 243579109 243579109 G A SDCCAG8 Missense_Mutation p.M574I 0.44 deleterious(0.01) possibly_damaging(0.707) TCGA-DG-A2KK-01 1 26357061 26357063 AGA - EXTL1 In_Frame_Del p.K360del 0.54 TCGA-DG-A2KK-01 1 31406085 31406085 G C PUM1 Missense_Mutation p.I1180M 0.43 deleterious(0.03) benign(0.025) TCGA-DG-A2KK-01 1 37941335 37941335 A G ZC3H12A Missense_Mutation p.T80A 0.45 tolerated(0.24) benign(0.085) TCGA-DG-A2KK-01 1 39877398 39877398 G T KIAA0754 Missense_Mutation p.Q351H 0.39 benign(0.055) TCGA-DG-A2KK-01 1 44396365 44396365 G C ST3GAL3 3'UTR 0.43 TCGA-DG-A2KK-01 1 45253071 45253071 C T BEST4 Missense_Mutation p.D74N 0.34 tolerated(0.32) benign(0.009) TCGA-DG-A2KK-01 1 47883282 47883282 C T FOXE3 3'UTR 0.29 TCGA-DG-A2KK-01 1 48999785 48999785 C T AGBL4 3'UTR 0.35 TCGA-DG-A2KK-01 1 52553734 52553734 C G BTF3L4 3'UTR 0.28 TCGA-DG-A2KK-01 1 53352634 53352634 C G ZYG11A Missense_Mutation p.F671L 0.31 tolerated(0.09) benign(0.16) TCGA-DG-A2KK-01 1 54412200 54412200 C G LRRC42 5'UTR 0.44 TCGA-DG-A2KK-01 1 6399616 6399616 G A ACOT7 Missense_Mutation p.R109C 0.31 deleterious(0.03) benign(0.196) TCGA-DG-A2KK-01 1 65273032 65273032 G A RAVER2 Missense_Mutation p.E506K 0.08 tolerated(0.24) possibly_damaging(0.713) TCGA-DG-A2KK-01 20 1115859 1115859 C T PSMF1 Missense_Mutation p.P154L 0.71 tolerated(0.08) benign(0.001) TCGA-DG-A2KK-01 20 13052990 13052990 C T SPTLC3 Silent p.I130I 0.24 TCGA-DG-A2KK-01 20 19982468 19982468 C T RIN2 3'UTR 0.65 TCGA-DG-A2KK-01 20 22562711 22562711 G A FOXA2 Missense_Mutation p.S390L 0.69 deleterious(0.02) probably_damaging(0.931) TCGA-DG-A2KK-01 20 29625958 29625958 G A FRG1B Missense_Mutation p.E68K 0.03 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KK-01 20 30720896 30720896 C T TM9SF4 Silent p.I32I 0.08 TCGA-DG-A2KK-01 20 32358057 32358057 C T ZNF341 Silent p.L520L 0.22 TCGA-DG-A2KK-01 20 33533875 33533875 G A GSS Silent p.L52L 0.24 TCGA-DG-A2KK-01 20 37191319 37191319 G A RALGAPB Missense_Mutation p.D1226N 0.38 tolerated(0.17) possibly_damaging(0.615) TCGA-DG-A2KK-01 20 44681732 44681732 C G SLC12A5 Silent p.L861L 0.21 TCGA-DG-A2KK-01 20 44983854 44983854 G C SLC35C2 Silent p.L145L 0.45 TCGA-DG-A2KK-01 20 57768903 57768903 C T ZNF831 Silent p.L943L 0.23 TCGA-DG-A2KK-01 20 57768913 57768913 C T ZNF831 Nonsense_Mutation p.Q947* 0.20 TCGA-DG-A2KK-01 20 57768971 57768971 C G ZNF831 Missense_Mutation p.S966C 0.24 tolerated(0.16) possibly_damaging(0.527) TCGA-DG-A2KK-01 20 58574697 58574697 A G CDH26 Silent p.A692A 0.08 TCGA-DG-A2KK-01 20 60790975 60790975 A G HRH3 3'UTR 0.19 TCGA-DG-A2KK-01 20 61939375 61939375 C G COL20A1 Silent p.L236L 0.45 TCGA-DG-A2KK-01 20 62195045 62195045 G A HELZ2 Silent p.F1710F 0.26 TCGA-DG-A2KK-01 21 33104318 33104318 G A SCAF4 5'UTR 0.08 TCGA-DG-A2KK-01 21 33346885 33346885 G C HUNK Silent p.L343L 0.29 TCGA-DG-A2KK-01 21 34400474 34400474 G A OLIG2 3'UTR 0.42 TCGA-DG-A2KK-01 21 36161748 36161748 C G RUNX1 3'UTR 0.40 TCGA-DG-A2KK-01 21 38884298 38884298 G C DYRK1A Missense_Mutation p.E586Q 0.41 tolerated_low_confidence(0.15) possibly_damaging(0.628) TCGA-DG-A2KK-01 21 38884710 38884710 C T DYRK1A Missense_Mutation p.S723F 0.07 deleterious_low_confidence(0) benign(0.102) TCGA-DG-A2KK-01 21 45929153 45929153 G A TSPEAR Silent p.I561I 0.07 TCGA-DG-A2KK-01 21 45993833 45993833 C G KRTAP10-4 Silent p.P66P 0.05 TCGA-DG-A2KK-01 21 45999800 45999800 G C KRTAP10-5 Missense_Mutation p.S219C 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-DG-A2KK-01 22 18571981 18571981 C T PEX26 3'UTR 0.35 TCGA-DG-A2KK-01 22 22051029 22051029 C T PPIL2 Intron 0.17 TCGA-DG-A2KK-01 22 24577538 24577538 C T SUSD2 Silent p.L17L 0.41 TCGA-DG-A2KK-01 22 25289571 25289571 C T SGSM1 Silent p.I703I 0.31 TCGA-DG-A2KK-01 22 28378302 28378302 G T TTC28 Silent p.P2451P 0.24 TCGA-DG-A2KK-01 22 36680288 36680288 C T MYH9 Silent p.L1872L 0.50 TCGA-DG-A2KK-01 22 38046109 38046109 G C SH3BP1 Intron 0.13 TCGA-DG-A2KK-01 22 42807594 42807594 C T NFAM1 Silent p.Q90Q 0.40 TCGA-DG-A2KK-01 22 43575711 43575711 G A TTLL12 Missense_Mutation p.R252W 0.09 deleterious(0) probably_damaging(0.996) TCGA-DG-A2KK-01 22 50615963 50615963 G A PANX2 Silent p.A274A 0.40 TCGA-DG-A2KK-01 22 50944111 50944111 G A LMF2 Missense_Mutation p.T303M 0.47 tolerated(0.32) benign(0.021) TCGA-DG-A2KK-01 2 100168056 100168056 T - AFF3 Frame_Shift_Del p.E1212Dfs*77 0.17 TCGA-DG-A2KK-01 2 109150518 109150518 G A AC012487.2 RNA 0.56 TCGA-DG-A2KK-01 2 113251762 113251762 G T TTL Missense_Mutation p.W93C 0.35 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KK-01 2 113522197 113522197 C G CKAP2L 5'UTR 0.34 TCGA-DG-A2KK-01 2 118694294 118694294 G T CCDC93 Missense_Mutation p.H543N 0.38 deleterious(0.02) benign(0.412) TCGA-DG-A2KK-01 2 122159170 122159170 G A CLASP1 Missense_Mutation p.L939F 0.32 deleterious(0.03) probably_damaging(0.979) TCGA-DG-A2KK-01 2 14789464 14789464 C T AC011897.1 3'UTR 0.06 TCGA-DG-A2KK-01 2 152226605 152226605 G A TNFAIP6 Missense_Mutation p.E156K 0.38 tolerated(0.1) benign(0.014) TCGA-DG-A2KK-01 2 159477761 159477761 G A PKP4 Missense_Mutation p.R144K 0.39 tolerated(0.06) benign(0.194) TCGA-DG-A2KK-01 2 159537207 159537207 G C PKP4 3'UTR 0.09 TCGA-DG-A2KK-01 2 162661046 162661046 G A SLC4A10 Missense_Mutation p.R73K 0.51 tolerated(0.19) benign(0.422) TCGA-DG-A2KK-01 2 162851863 162851863 C G DPP4 Missense_Mutation p.R691T 0.31 deleterious(0) probably_damaging(0.992) TCGA-DG-A2KK-01 2 169023878 169023878 C A STK39 Missense_Mutation p.V121L 0.52 tolerated(0.07) benign(0.203) TCGA-DG-A2KK-01 2 179368964 179368964 G C PLEKHA3 3'UTR 0.39 TCGA-DG-A2KK-01 2 179408347 179408347 G C TTN Nonsense_Mutation p.S32118* 0.25 TCGA-DG-A2KK-01 2 18113402 18113402 C A KCNS3 Missense_Mutation p.T376N 0.30 deleterious(0.01) probably_damaging(0.966) TCGA-DG-A2KK-01 2 200173588 200173588 C A SATB2 Silent p.L545L 0.31 TCGA-DG-A2KK-01 2 20113420 20113420 C A WDR35 Nonsense_Mutation p.E1149* 0.42 TCGA-DG-A2KK-01 2 201775824 201775824 G A ORC2 3'UTR 0.44 TCGA-DG-A2KK-01 2 211302514 211302514 G A LANCL1 Missense_Mutation p.S258F 0.48 deleterious(0) probably_damaging(0.991) TCGA-DG-A2KK-01 2 216967248 216967248 G A TMEM169 3'UTR 0.38 TCGA-DG-A2KK-01 2 220161732 220161732 C G PTPRN Missense_Mutation p.K737N 0.45 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KK-01 2 228552884 228552884 G A SLC19A3 Nonsense_Mutation p.Q438* 0.45 TCGA-DG-A2KK-01 2 233348763 233348763 G A ECEL1 Missense_Mutation p.A452V 0.48 deleterious(0.02) possibly_damaging(0.723) TCGA-DG-A2KK-01 2 237074658 237074658 C T GBX2 Missense_Mutation p.E316K 0.57 deleterious(0.02) benign(0.432) TCGA-DG-A2KK-01 2 239040199 239040199 C T ESPNL Silent p.L948L 0.37 TCGA-DG-A2KK-01 2 241404088 241404088 C G GPC1 Silent p.V313V 0.45 TCGA-DG-A2KK-01 2 241404589 241404589 C T GPC1 Silent p.A410A 0.56 TCGA-DG-A2KK-01 2 242742869 242742869 G A GAL3ST2 Missense_Mutation p.R162Q 0.43 tolerated(0.22) benign(0.017) TCGA-DG-A2KK-01 2 26690260 26690260 C T OTOF Silent p.K1400K 0.31 TCGA-DG-A2KK-01 2 36986225 36986225 G C VIT Intron 0.33 TCGA-DG-A2KK-01 2 46414146 46414146 G C PRKCE 3'UTR 0.34 TCGA-DG-A2KK-01 2 46985885 46985885 G A SOCS5 Silent p.S72S 0.41 TCGA-DG-A2KK-01 2 7154614 7154614 C T RNF144A Silent p.I55I 0.45 TCGA-DG-A2KK-01 2 73899496 73899496 G A ALMS1P RNA 0.53 TCGA-DG-A2KK-01 2 74746333 74746333 C A DQX1 Nonsense_Mutation p.G611* 0.38 TCGA-DG-A2KK-01 2 74749890 74749890 C T DQX1 Missense_Mutation p.A438T 0.37 tolerated(0.61) possibly_damaging(0.835) TCGA-DG-A2KK-01 2 86371573 86371573 C G IMMT Missense_Mutation p.E699Q 0.42 deleterious(0) possibly_damaging(0.667) TCGA-DG-A2KK-01 2 86386795 86386795 C G IMMT Splice_Site p.X299_splice 0.07 TCGA-DG-A2KK-01 2 8967125 8967125 C T KIDINS220 Silent p.E33E 0.48 TCGA-DG-A2KK-01 3 105271314 105271314 G A ALCAM Missense_Mutation p.E517K 0.65 tolerated(0.09) benign(0.298) TCGA-DG-A2KK-01 3 105397350 105397350 G A CBLB Missense_Mutation p.L832F 0.65 tolerated_low_confidence(0.52) benign(0.001) TCGA-DG-A2KK-01 3 119886319 119886319 G C GPR156 Missense_Mutation p.Q669E 0.04 tolerated(1) benign(0.003) TCGA-DG-A2KK-01 3 120389327 120389327 C T HGD Missense_Mutation p.D77N 0.32 tolerated(0.29) benign(0.001) TCGA-DG-A2KK-01 3 122134463 122134463 G C WDR5B 5'UTR 0.30 TCGA-DG-A2KK-01 3 126185025 126185025 T C ZXDC Missense_Mutation p.M472V 0.51 tolerated(0.43) benign(0.006) TCGA-DG-A2KK-01 3 126260776 126260776 G A CHST13 Silent p.L127L 0.58 TCGA-DG-A2KK-01 3 133648524 133648524 G C C3orf36 5'UTR 0.27 TCGA-DG-A2KK-01 3 136305745 136305745 G C STAG1 Intron 0.59 TCGA-DG-A2KK-01 3 15113616 15113616 C T ZFYVE20 3'UTR 0.41 TCGA-DG-A2KK-01 3 160167567 160167567 C T TRIM59 5'UTR 0.59 TCGA-DG-A2KK-01 3 176755911 176755911 G A TBL1XR1 Missense_Mutation p.S366F 0.50 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.52 deleterious(0.02) probably_damaging(0.959) TCGA-DG-A2KK-01 3 182937697 182937697 C T MCF2L2 Missense_Mutation p.E773K 0.59 deleterious(0.02) benign(0.099) TCGA-DG-A2KK-01 3 197712736 197712736 G C LMLN Missense_Mutation p.D302H 0.28 tolerated(0.14) benign(0.06) TCGA-DG-A2KK-01 3 25666254 25666254 G C TOP2B Missense_Mutation p.F750L 0.38 tolerated(0.21) benign(0.017) TCGA-DG-A2KK-01 3 44488959 44488964 CTTTTC TTTTT ZNF445 Frame_Shift_Del p.M733Ifs*124 0.19 TCGA-DG-A2KK-01 3 45719890 45719890 C T LIMD1 3'UTR 0.34 TCGA-DG-A2KK-01 3 48463769 48463769 C T PLXNB1 Missense_Mutation p.E464K 0.40 tolerated(0.25) benign(0.001) TCGA-DG-A2KK-01 3 49006070 49006070 C T ARIH2 Silent p.L214L 0.32 TCGA-DG-A2KK-01 3 52521854 52521854 C G NISCH Silent p.L782L 0.07 TCGA-DG-A2KK-01 3 52538552 52538552 C G STAB1 Missense_Mutation p.S409C 0.10 deleterious(0.02) probably_damaging(0.94) TCGA-DG-A2KK-01 3 52823673 52823673 C T ITIH1 Silent p.F708F 0.09 TCGA-DG-A2KK-01 3 52823817 52823817 C A ITIH1 Silent p.G756G 0.08 TCGA-DG-A2KK-01 3 54604082 54604082 C G CACNA2D3 Nonsense_Mutation p.S280* 0.32 TCGA-DG-A2KK-01 3 57307072 57307072 C G APPL1 3'UTR 0.33 TCGA-DG-A2KK-01 3 62385197 62385197 C G CADPS Missense_Mutation p.E1316Q 0.32 tolerated(1) benign(0.403) TCGA-DG-A2KK-01 3 66271398 66271398 T C SLC25A26 5'UTR 0.40 TCGA-DG-A2KK-01 3 98475282 98475282 C T ST3GAL6 5'UTR 0.22 TCGA-DG-A2KK-01 4 10491944 10491944 G A CLNK 3'UTR 0.33 TCGA-DG-A2KK-01 4 125591339 125591339 C G ANKRD50 Silent p.L1031L 0.40 TCGA-DG-A2KK-01 4 126238993 126238993 C G FAT4 Nonsense_Mutation p.S476* 0.11 TCGA-DG-A2KK-01 4 151818935 151818935 G A LRBA Silent p.L654L 0.47 TCGA-DG-A2KK-01 4 151935883 151935883 G C LRBA 5'UTR 0.36 TCGA-DG-A2KK-01 4 153247289 153247289 G A FBXW7 Missense_Mutation p.R505C 0.53 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 4 155665567 155665567 C T LRAT Missense_Mutation p.A30V 0.42 tolerated(0.27) benign(0.014) TCGA-DG-A2KK-01 4 183721066 183721066 G A TENM3 Silent p.T2554T 0.43 TCGA-DG-A2KK-01 4 41988154 41988154 C T DCAF4L1 3'UTR 0.26 TCGA-DG-A2KK-01 4 4281444 4281444 G A LYAR Silent p.V90V 0.36 TCGA-DG-A2KK-01 4 42965086 42965086 C T GRXCR1 Nonsense_Mutation p.R188* 0.38 TCGA-DG-A2KK-01 4 6642923 6642923 G C MRFAP1 Missense_Mutation p.E112Q 0.26 tolerated(0.07) benign(0.104) TCGA-DG-A2KK-01 4 71554256 71554256 G A UTP3 5'UTR 0.31 TCGA-DG-A2KK-01 4 79531278 79531278 G A ANXA3 3'UTR 0.36 TCGA-DG-A2KK-01 4 83847684 83847684 G C LIN54 3'UTR 0.45 TCGA-DG-A2KK-01 4 96761857 96761857 G C PDHA2 Missense_Mutation p.E186Q 0.41 tolerated(0.31) benign(0.03) TCGA-DG-A2KK-01 5 110814092 110814092 G C CAMK4 Missense_Mutation p.E239Q 0.38 tolerated(0.05) probably_damaging(0.999) TCGA-DG-A2KK-01 5 126113469 126113469 G A LMNB1 Missense_Mutation p.R90Q 0.38 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 5 127866340 127866340 G A FBN2 Silent p.N128N 0.48 TCGA-DG-A2KK-01 5 136315127 136315127 G A SPOCK1 Silent p.G341G 0.44 TCGA-DG-A2KK-01 5 137087579 137087579 G C HNRNPA0 3'UTR 0.43 TCGA-DG-A2KK-01 5 140203334 140203334 G A PCDHA5 Silent p.L658L 0.09 TCGA-DG-A2KK-01 5 140347477 140347477 G C PCDHAC2 Missense_Mutation p.E376Q 0.44 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 5 140517297 140517297 G A PCDHB5 Missense_Mutation p.G761S 0.45 tolerated_low_confidence(0.99) benign(0.003) TCGA-DG-A2KK-01 5 141016320 141016320 A G HDAC3 Missense_Mutation p.V13A 0.37 deleterious(0.01) probably_damaging(0.953) TCGA-DG-A2KK-01 5 145435737 145435737 C A SH3RF2 Missense_Mutation p.Q506K 0.35 deleterious(0.01) benign(0.08) TCGA-DG-A2KK-01 5 147889570 147889570 G A HTR4 Silent p.F175F 0.40 TCGA-DG-A2KK-01 5 169410110 169410110 G A DOCK2 Silent p.Q946Q 0.30 TCGA-DG-A2KK-01 5 178460428 178460428 C T ZNF879 Silent p.F493F 0.43 TCGA-DG-A2KK-01 5 179289475 179289475 C T TBC1D9B 3'UTR 0.45 TCGA-DG-A2KK-01 5 23527489 23527489 C G PRDM9 Silent p.L764L 0.54 TCGA-DG-A2KK-01 5 54696067 54696067 C T SKIV2L2 Nonsense_Mutation p.Q767* 0.40 TCGA-DG-A2KK-01 5 63256510 63256510 G A HTR1A Missense_Mutation p.T346M 0.33 deleterious(0) probably_damaging(0.996) TCGA-DG-A2KK-01 5 6449072 6449072 G C UBE2QL1 Missense_Mutation p.E22D 0.24 tolerated(1) benign(0.001) TCGA-DG-A2KK-01 5 65465899 65465899 C T SREK1 Missense_Mutation p.S341L 0.53 deleterious(0.02) unknown(0) TCGA-DG-A2KK-01 5 70845414 70845414 G A BDP1 Missense_Mutation p.E2326K 0.41 tolerated(0.15) benign(0.082) TCGA-DG-A2KK-01 5 71616231 71616231 G C PTCD2 Missense_Mutation p.A8P 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.698) TCGA-DG-A2KK-01 5 77590312 77590312 G A AP3B1 Missense_Mutation p.S31L 0.07 deleterious(0.01) benign(0.005) TCGA-DG-A2KK-01 5 82836731 82836731 G C VCAN Missense_Mutation p.E2637Q 0.28 deleterious(0.03) probably_damaging(0.933) TCGA-DG-A2KK-01 5 87564617 87564617 G C TMEM161B 5'UTR 0.44 TCGA-DG-A2KK-01 5 89949139 89949139 G C GPR98 Missense_Mutation p.E1250Q 0.34 possibly_damaging(0.727) TCGA-DG-A2KK-01 5 95234166 95234166 G C ELL2 Missense_Mutation p.L435V 0.45 tolerated(0.3) benign(0.006) TCGA-DG-A2KK-01 6 100391006 100391006 C T MCHR2 Missense_Mutation p.V136I 0.43 deleterious(0.02) benign(0.081) TCGA-DG-A2KK-01 6 107008788 107008788 G A AIM1 Missense_Mutation p.R1581Q 0.40 tolerated(0.06) probably_damaging(0.999) TCGA-DG-A2KK-01 6 108502144 108502144 C T NR2E1 Silent p.I291I 0.05 TCGA-DG-A2KK-01 6 111213977 111213977 G A AMD1 Missense_Mutation p.D219N 0.41 tolerated(0.1) benign(0.183) TCGA-DG-A2KK-01 6 116832845 116832845 C T FAM26E 5'UTR 0.44 TCGA-DG-A2KK-01 6 117609588 117609588 G C ROS1 3'UTR 0.45 TCGA-DG-A2KK-01 6 119344130 119344130 G A FAM184A Missense_Mutation p.S377L 0.41 deleterious(0.01) benign(0.205) TCGA-DG-A2KK-01 6 121768982 121768982 C T GJA1 Missense_Mutation p.S330F 0.39 deleterious(0) possibly_damaging(0.645) TCGA-DG-A2KK-01 6 130536361 130536361 C T SAMD3 Missense_Mutation p.E20K 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DG-A2KK-01 6 134212874 134212874 G T TCF21 Silent p.G158G 0.52 TCGA-DG-A2KK-01 6 146678717 146678717 G A GRM1 Missense_Mutation p.V497I 0.44 tolerated(0.28) benign(0.029) TCGA-DG-A2KK-01 6 153304092 153304092 C G FBXO5 Translation_Start_Site p.M1? 0.50 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-DG-A2KK-01 6 159660765 159660765 C T FNDC1 Missense_Mutation p.P1466L 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-DG-A2KK-01 6 160169397 160169397 G C WTAP Missense_Mutation p.D150H 0.38 deleterious(0.03) possibly_damaging(0.737) TCGA-DG-A2KK-01 6 160210613 160210613 G A TCP1 5'UTR 0.24 TCGA-DG-A2KK-01 6 17706605 17706605 G A NUP153 Missense_Mutation p.A5V 0.82 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-DG-A2KK-01 6 26252218 26252218 G C HIST1H2BH Missense_Mutation p.E114Q 0.37 deleterious_low_confidence(0.02) benign(0.192) TCGA-DG-A2KK-01 6 30585715 30585715 G A MRPS18B Missense_Mutation p.V25I 0.45 tolerated(0.07) benign(0.257) TCGA-DG-A2KK-01 6 31238207 31238207 C T HLA-C Silent p.L225L 0.29 TCGA-DG-A2KK-01 6 31323314 31323314 C T HLA-B Silent p.L225L 0.06 TCGA-DG-A2KK-01 6 31931187 31931187 C G SKIV2L Intron 0.34 TCGA-DG-A2KK-01 6 31937798 31937798 G A DXO Silent p.L349L 0.40 TCGA-DG-A2KK-01 6 32163297 32163297 C G NOTCH4 Missense_Mutation p.E1977Q 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DG-A2KK-01 6 33631277 33631277 G C ITPR3 Missense_Mutation p.E319Q 0.06 tolerated(0.66) possibly_damaging(0.648) TCGA-DG-A2KK-01 6 36179145 36179145 C T BRPF3 Missense_Mutation p.R764C 0.51 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KK-01 6 41165887 41165887 G A TREML2 Silent p.I112I 0.34 TCGA-DG-A2KK-01 6 4117592 4117592 G A ECI2 Nonsense_Mutation p.Q327* 0.23 TCGA-DG-A2KK-01 6 46806754 46806754 C T MEP1A Missense_Mutation p.R708C 0.38 deleterious(0) possibly_damaging(0.883) TCGA-DG-A2KK-01 6 5613479 5613479 C G FARS2 Missense_Mutation p.F381L 0.12 deleterious(0.04) probably_damaging(0.977) TCGA-DG-A2KK-01 6 6174946 6174946 G T F13A1 Silent p.I538I 0.65 TCGA-DG-A2KK-01 6 70407490 70407490 G A LMBRD1 Missense_Mutation p.S461F 0.34 tolerated(0.7) benign(0.001) TCGA-DG-A2KK-01 6 90372609 90372609 C T MDN1 Missense_Mutation p.D4772N 0.33 possibly_damaging(0.804) TCGA-DG-A2KK-01 6 90422436 90422436 G A MDN1 Missense_Mutation p.L2430F 0.28 possibly_damaging(0.774) TCGA-DG-A2KK-01 7 100414848 100414848 G A EPHB4 Silent p.F518F 0.41 TCGA-DG-A2KK-01 7 143400364 143400364 G A FAM115C Missense_Mutation p.V93M 0.15 deleterious(0.02) possibly_damaging(0.822) TCGA-DG-A2KK-01 7 143701870 143701870 C G OR6B1 Missense_Mutation p.R261G 0.05 deleterious(0.05) benign(0.262) TCGA-DG-A2KK-01 7 151945201 151945201 G A KMT2C Missense_Mutation p.S773L 0.30 benign(0.027) TCGA-DG-A2KK-01 7 22766845 22766845 G T IL6 5'UTR 0.44 TCGA-DG-A2KK-01 7 23561389 23561389 G A TRA2A Missense_Mutation p.S36F 0.09 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-DG-A2KK-01 7 23561455 23561455 G A TRA2A Missense_Mutation p.S14F 0.11 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-DG-A2KK-01 7 26678744 26678744 G A C7orf71 5'UTR 0.05 TCGA-DG-A2KK-01 7 27133666 27133666 C G HOXA1 3'UTR 0.22 TCGA-DG-A2KK-01 7 2979475 2979475 C T CARD11 Missense_Mutation p.E258K 0.32 deleterious(0.02) possibly_damaging(0.665) TCGA-DG-A2KK-01 7 31135348 31135348 C A ADCYAP1R1 Intron 0.33 TCGA-DG-A2KK-01 7 75933350 75933350 G A HSPB1 Missense_Mutation p.E160K 0.42 deleterious(0.03) benign(0.262) TCGA-DG-A2KK-01 7 75933361 75933361 G A HSPB1 Silent p.L163L 0.43 TCGA-DG-A2KK-01 7 8474220 8474220 C A NXPH1 5'UTR 0.45 TCGA-DG-A2KK-01 7 90836854 90836854 C T CDK14 3'UTR 0.31 TCGA-DG-A2KK-01 7 97857364 97857364 C T TECPR1 Silent p.E825E 0.40 TCGA-DG-A2KK-01 7 99799540 99799540 C T GATS 3'UTR 0.06 TCGA-DG-A2KK-01 8 104927785 104927785 A C RIMS2 Missense_Mutation p.K625N 0.34 deleterious_low_confidence(0) benign(0.339) TCGA-DG-A2KK-01 8 104933999 104933999 C G RIMS2 Nonsense_Mutation p.S728* 0.40 TCGA-DG-A2KK-01 8 10583602 10583602 C A SOX7 Missense_Mutation p.M323I 0.46 tolerated(0.52) benign(0.003) TCGA-DG-A2KK-01 8 110478940 110478940 C T PKHD1L1 Silent p.F2849F 0.34 TCGA-DG-A2KK-01 8 11995989 11995990 - A USP17L2 Frame_Shift_Ins p.S94Ffs*62 0.20 TCGA-DG-A2KK-01 8 124515502 124515502 C T FBXO32 3'UTR 0.34 TCGA-DG-A2KK-01 8 131200418 131200418 C T ASAP1 Silent p.L139L 0.30 TCGA-DG-A2KK-01 8 131859744 131859744 C G ADCY8 Missense_Mutation p.D810H 0.46 tolerated(0.19) benign(0.006) TCGA-DG-A2KK-01 8 145139652 145139652 C G GPAA1 Silent p.L346L 0.24 TCGA-DG-A2KK-01 8 26614137 26614137 G A ADRA1A Intron 0.45 TCGA-DG-A2KK-01 8 27633891 27633891 C T ESCO2 Silent p.F22F 0.40 TCGA-DG-A2KK-01 8 28611202 28611202 C G EXTL3 3'UTR 0.29 TCGA-DG-A2KK-01 8 38065202 38065202 C T BAG4 Missense_Mutation p.S184F 0.51 deleterious(0) possibly_damaging(0.775) TCGA-DG-A2KK-01 8 41546047 41546047 G A ANK1 Missense_Mutation p.L1430F 0.52 deleterious(0) benign(0.168) TCGA-DG-A2KK-01 8 64122915 64122915 C T YTHDF3 3'UTR 0.38 TCGA-DG-A2KK-01 8 71549918 71549918 C G LACTB2 3'UTR 0.40 TCGA-DG-A2KK-01 8 81551883 81551883 C T ZNF704 3'UTR 0.50 TCGA-DG-A2KK-01 8 98289400 98289400 G A TSPYL5 Missense_Mutation p.R225W 0.25 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KK-01 8 99440178 99440178 C T KCNS2 5'UTR 0.49 TCGA-DG-A2KK-01 9 101914039 101914039 G C TGFBR1 3'UTR 0.42 TCGA-DG-A2KK-01 9 111660988 111660988 C G IKBKAP Missense_Mutation p.R749T 0.45 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 9 131105558 131105558 C G SLC27A4 Missense_Mutation p.I49M 0.37 tolerated(0.13) benign(0.252) TCGA-DG-A2KK-01 9 131154981 131154981 G A URM1 3'Flank 0.38 TCGA-DG-A2KK-01 9 131218717 131218717 T C ODF2 5'UTR 0.50 TCGA-DG-A2KK-01 9 131218718 131218718 C T ODF2 5'UTR 0.52 TCGA-DG-A2KK-01 9 131832688 131832688 G A FAM73B Missense_Mutation p.G580R 0.39 deleterious(0) probably_damaging(0.979) TCGA-DG-A2KK-01 9 134074116 134074116 C T NUP214 Silent p.F1745F 0.36 TCGA-DG-A2KK-01 9 136243391 136243391 G C C9orf96 Missense_Mutation p.R16P 0.29 tolerated(0.21) benign(0.296) TCGA-DG-A2KK-01 9 137642697 137642697 C T COL5A1 Missense_Mutation p.S544F 0.41 probably_damaging(0.993) TCGA-DG-A2KK-01 9 137703191 137703191 C T COL5A1 Missense_Mutation p.P1179S 0.33 unknown(0) TCGA-DG-A2KK-01 9 138710293 138710293 C G CAMSAP1 Missense_Mutation p.E1377Q 0.37 deleterious(0.03) benign(0.141) TCGA-DG-A2KK-01 9 140082166 140082166 G T ANAPC2 Missense_Mutation p.F169L 0.37 tolerated(0.44) benign(0.199) TCGA-DG-A2KK-01 9 140807659 140807659 C T CACNA1B Silent p.F186F 0.39 TCGA-DG-A2KK-01 9 19300261 19300261 G C DENND4C Missense_Mutation p.E415Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KK-01 9 19786828 19786828 C T SLC24A2 Missense_Mutation p.E13K 0.36 tolerated_low_confidence(0.06) benign(0.119) TCGA-DG-A2KK-01 9 23731044 23731044 C T ELAVL2 Silent p.L103L 0.12 TCGA-DG-A2KK-01 9 32786767 32786767 G C TMEM215 3'UTR 0.34 TCGA-DG-A2KK-01 9 40774728 40774728 G A ZNF658 Missense_Mutation p.H183Y 0.38 tolerated(0.06) benign(0.255) TCGA-DG-A2KK-01 9 72287076 72287076 G A APBA1 5'UTR 0.37 TCGA-DG-A2KK-01 9 91973638 91973638 G A SECISBP2 Missense_Mutation p.E822K 0.44 tolerated(1) benign(0.02) TCGA-DG-A2KK-01 9 97177517 97177517 G A HIATL1 Silent p.L62L 0.41 TCGA-DG-A2KK-01 X 112019883 112019883 C G AMOT 3'UTR 0.22 TCGA-DG-A2KK-01 X 112066006 112066006 G A AMOT Nonsense_Mutation p.Q117* 0.41 TCGA-DG-A2KK-01 X 136652793 136652793 A G ZIC3 3'UTR 0.40 TCGA-DG-A2KK-01 X 144910677 144910677 C G TMEM257 3'UTR 0.05 TCGA-DG-A2KK-01 X 147013963 147013963 C T FMR1 Missense_Mutation p.S217L 0.05 deleterious(0) benign(0.126) TCGA-DG-A2KK-01 X 149999752 149999752 C G CD99L2 Missense_Mutation p.D28H 0.28 deleterious(0.02) benign(0.201) TCGA-DG-A2KK-01 X 153044876 153044876 G A SRPK3 5'Flank 0.37 TCGA-DG-A2KK-01 X 153295568 153295568 G A MECP2 3'Flank 0.51 TCGA-DG-A2KK-01 X 153599451 153599451 C T FLNA Missense_Mutation p.E55K 0.46 deleterious(0) probably_damaging(1) TCGA-DG-A2KK-01 X 1585319 1585319 G C P2RY8 Missense_Mutation p.L45V 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-DG-A2KK-01 X 17745123 17745123 C G NHS Nonsense_Mutation p.S945* 0.43 TCGA-DG-A2KK-01 X 2408774 2408774 G A ZBED1 5'UTR 0.40 TCGA-DG-A2KK-01 X 27765143 27765143 C T DCAF8L2 Missense_Mutation p.S44L 0.14 tolerated(0.1) benign(0.012) TCGA-DG-A2KK-01 X 34648221 34648221 C G TMEM47 3'UTR 0.37 TCGA-DG-A2KK-01 X 37665747 37665747 C T CYBB Silent p.L474L 0.10 TCGA-DG-A2KK-01 X 48382414 48382414 C G EBP Silent p.L85L 0.37 TCGA-DG-A2KK-01 X 48887123 48887123 C G TFE3 3'UTR 0.42 TCGA-DG-A2KK-01 X 53107190 53107190 C G GPR173 3'UTR 0.14 TCGA-DG-A2KK-01 X 54955746 54955746 C G TRO Silent p.L863L 0.40 TCGA-DG-A2KK-01 X 55513291 55513291 G C USP51 Silent p.L694L 0.41 TCGA-DG-A2KK-01 X 57621128 57621128 G A ZXDB 3'UTR 0.27 TCGA-DG-A2KK-01 X 64725523 64725523 C G ZC3H12B 3'UTR 0.28 TCGA-DG-A2KK-01 X 64752491 64752491 C T LAS1L Missense_Mutation p.E128K 0.39 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KK-01 X 66766450 66766450 C T AR Nonsense_Mutation p.Q488* 0.20 TCGA-DG-A2KK-01 X 69457007 69457007 C T AWAT1 Silent p.F123F 0.48 TCGA-DG-A2KK-01 X 70470478 70470478 G A ZMYM3 Missense_Mutation p.R293C 0.36 deleterious(0) possibly_damaging(0.902) TCGA-DG-A2KK-01 X 70824016 70824016 G A ACRC Missense_Mutation p.D297N 0.54 unknown(0) TCGA-DG-A2KK-01 X 72224239 72224239 C A PABPC1L2B 3'UTR 0.15 TCGA-DG-A2KK-01 X 76776926 76776927 CA - ATRX Frame_Shift_Del p.V2342Dfs*9 0.33 TCGA-DG-A2KK-01 X 9673058 9673058 G C TBL1X Missense_Mutation p.Q380H 0.48 deleterious(0.05) probably_damaging(0.928) TCGA-DG-A2KL-01 10 112771399 112771399 G A SHOC2 Silent p.L524L 0.27 TCGA-DG-A2KL-01 10 115610108 115610108 G C DCLRE1A Missense_Mutation p.I252M 0.28 deleterious(0.04) benign(0.39) TCGA-DG-A2KL-01 10 24889722 24889722 C G ARHGAP21 Missense_Mutation p.L995F 0.24 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KL-01 10 909788 909788 C A LARP4B Nonsense_Mutation p.E109* 0.28 TCGA-DG-A2KL-01 11 1011601 1011601 G C AP2A2 3'UTR 0.23 TCGA-DG-A2KL-01 11 117392107 117392107 C T DSCAML1 Silent p.V377V 0.27 TCGA-DG-A2KL-01 11 118772555 118772555 C T BCL9L Missense_Mutation p.V633M 0.23 possibly_damaging(0.815) TCGA-DG-A2KL-01 11 124413323 124413323 G C OR8B12 Missense_Mutation p.I76M 0.32 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-DG-A2KL-01 11 124789809 124789809 C T HEPN1 Missense_Mutation p.H55Y 0.40 tolerated_low_confidence(0.05) possibly_damaging(0.607) TCGA-DG-A2KL-01 11 132081971 132081971 T C NTM Silent p.N152N 0.26 TCGA-DG-A2KL-01 11 22360022 22360022 G A SLC17A6 5'UTR 0.30 TCGA-DG-A2KL-01 11 3114255 3114255 G C OSBPL5 Missense_Mutation p.I658M 0.14 deleterious(0) probably_damaging(0.997) TCGA-DG-A2KL-01 11 43852428 43852428 C T HSD17B12 Intron 0.33 TCGA-DG-A2KL-01 11 47297739 47297739 C T MADD Silent p.L317L 0.20 TCGA-DG-A2KL-01 11 494945 494945 G A RNH1 Silent p.D412D 0.20 TCGA-DG-A2KL-01 11 5173437 5173437 G A OR52A1 Missense_Mutation p.R55C 0.40 tolerated(0.08) benign(0.009) TCGA-DG-A2KL-01 11 56143163 56143163 G C OR8U1 Missense_Mutation p.E22Q 0.22 deleterious(0.05) possibly_damaging(0.653) TCGA-DG-A2KL-01 11 6007924 6007924 G C OR52L1 Silent p.L79L 0.24 TCGA-DG-A2KL-01 11 60183299 60183299 T A MS4A14 Silent p.P319P 0.32 TCGA-DG-A2KL-01 11 6291485 6291485 G A CCKBR Missense_Mutation p.V191M 0.17 deleterious(0) probably_damaging(0.934) TCGA-DG-A2KL-01 11 66264946 66264946 C T DPP3 Nonsense_Mutation p.Q626* 0.12 TCGA-DG-A2KL-01 11 6661921 6661921 G A DCHS1 Silent p.D308D 0.17 TCGA-DG-A2KL-01 11 68747955 68747955 G C MRGPRD Missense_Mutation p.F167L 0.23 tolerated(0.16) benign(0.039) TCGA-DG-A2KL-01 12 113730871 113730871 G C TPCN1 Missense_Mutation p.R821T 0.16 tolerated(0.36) benign(0.274) TCGA-DG-A2KL-01 12 133454168 133454168 G C CHFR Nonsense_Mutation p.S69* 0.15 TCGA-DG-A2KL-01 12 1882007 1882007 G A ADIPOR2 Splice_Site p.X58_splice 0.12 TCGA-DG-A2KL-01 12 18891478 18891478 C A CAPZA3 Missense_Mutation p.F92L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-DG-A2KL-01 12 26639267 26639267 C G ITPR2 Missense_Mutation p.E1861Q 0.13 tolerated(0.08) benign(0.044) TCGA-DG-A2KL-01 12 416705 416705 C T KDM5A Missense_Mutation p.R1282H 0.16 deleterious(0.03) probably_damaging(0.943) TCGA-DG-A2KL-01 12 4920714 4920714 G A KCNA6 Missense_Mutation p.E503K 0.23 tolerated_low_confidence(0.07) benign(0.018) TCGA-DG-A2KL-01 12 4921446 4921446 G T KCNA6 3'UTR 0.17 TCGA-DG-A2KL-01 12 53875770 53875771 TT G MAP3K12 Frame_Shift_Del p.E845Afs*? 0.18 TCGA-DG-A2KL-01 12 54686942 54686942 G C NFE2 Nonsense_Mutation p.S113* 0.19 TCGA-DG-A2KL-01 12 57485779 57485779 G A NAB2 Missense_Mutation p.E319K 0.12 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KL-01 12 57910761 57910761 C T DDIT3 Missense_Mutation p.R137Q 0.17 tolerated(0.45) possibly_damaging(0.579) TCGA-DG-A2KL-01 12 58020343 58020343 G C B4GALNT1 3'UTR 0.15 TCGA-DG-A2KL-01 12 69970571 69970571 C T FRS2 3'UTR 0.19 TCGA-DG-A2KL-01 12 7019143 7019143 G C LRRC23 Silent p.L237L 0.16 TCGA-DG-A2KL-01 12 73057351 73057351 C T TRHDE 3'UTR 0.16 TCGA-DG-A2KL-01 12 77253379 77253379 C G CSRP2 Missense_Mutation p.K151N 0.09 deleterious(0) probably_damaging(0.955) TCGA-DG-A2KL-01 13 21353517 21353517 G A XPO4 3'UTR 0.16 TCGA-DG-A2KL-01 13 22178093 22178093 A G MICU2 Silent p.F65F 0.22 TCGA-DG-A2KL-01 13 23908103 23908103 G C SACS Silent p.L3304L 0.47 TCGA-DG-A2KL-01 13 32367085 32367085 G A RXFP2 Missense_Mutation p.G549E 0.18 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KL-01 13 45563760 45563760 C T GPALPP1 5'UTR 0.23 TCGA-DG-A2KL-01 13 70713556 70713556 T C ATXN8OS RNA 0.15 TCGA-DG-A2KL-01 13 99338473 99338473 C T SLC15A1 Missense_Mutation p.V636M 0.35 deleterious(0) possibly_damaging(0.796) TCGA-DG-A2KL-01 14 106733275 106733275 C G IGHV1-24 Missense_Mutation p.D74H 0.33 tolerated(0.12) benign(0.013) TCGA-DG-A2KL-01 14 19553822 19553822 C T POTEG Missense_Mutation p.R136C 0.06 tolerated(0.07) benign(0.003) TCGA-DG-A2KL-01 14 20020102 20020102 T C POTEM Missense_Mutation p.K40R 0.10 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-DG-A2KL-01 14 22038145 22038145 G C OR10G3 Missense_Mutation p.A244G 0.44 deleterious(0) possibly_damaging(0.641) TCGA-DG-A2KL-01 14 24592635 24592635 T C DCAF11 3'UTR 0.19 TCGA-DG-A2KL-01 14 36121025 36121025 C T RALGAPA1 Missense_Mutation p.E1382K 0.11 deleterious(0) possibly_damaging(0.539) TCGA-DG-A2KL-01 14 50844422 50844422 G A CDKL1 Intron 0.16 TCGA-DG-A2KL-01 14 53066913 53066913 G A GPR137C Missense_Mutation p.D191N 0.16 tolerated(0.3) possibly_damaging(0.538) TCGA-DG-A2KL-01 14 54996927 54996927 C G CGRRF1 Silent p.L135L 0.14 TCGA-DG-A2KL-01 14 65240132 65240132 T C SPTB Missense_Mutation p.I1662V 0.16 tolerated(0.2) benign(0.184) TCGA-DG-A2KL-01 14 70712497 70712497 G A ADAM21P1 RNA 0.14 TCGA-DG-A2KL-01 14 71215635 71215635 C G MAP3K9 Missense_Mutation p.E413Q 0.16 tolerated(0.32) probably_damaging(0.962) TCGA-DG-A2KL-01 15 100589078 100589078 G A ADAMTS17 Missense_Mutation p.H859Y 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-DG-A2KL-01 15 69562059 69562059 C T GLCE 3'UTR 0.23 TCGA-DG-A2KL-01 15 77426049 77426049 C A PEAK1 Missense_Mutation p.Q1125H 0.12 tolerated(0.16) benign(0.023) TCGA-DG-A2KL-01 15 78454651 78454651 G C IDH3A Missense_Mutation p.E185Q 0.13 tolerated(0.32) benign(0.101) TCGA-DG-A2KL-01 15 79065434 79065434 C T ADAMTS7 Missense_Mutation p.E708K 0.13 deleterious(0) probably_damaging(0.992) TCGA-DG-A2KL-01 15 79294079 79294079 C T RASGRF1 Missense_Mutation p.D850N 0.19 deleterious(0.03) benign(0.359) TCGA-DG-A2KL-01 15 93528871 93528871 C T CHD2 Silent p.L1127L 0.14 TCGA-DG-A2KL-01 16 12758794 12758794 C G CPPED1 Silent p.L298L 0.11 TCGA-DG-A2KL-01 16 15100438 15100438 C T PDXDC1 Nonsense_Mutation p.Q193* 0.05 TCGA-DG-A2KL-01 16 20355366 20355366 G A UMOD Silent p.T437T 0.14 TCGA-DG-A2KL-01 16 20809691 20809691 C G ERI2 Missense_Mutation p.K477N 0.05 deleterious(0) possibly_damaging(0.807) TCGA-DG-A2KL-01 16 23478655 23478655 C A GGA2 3'UTR 0.29 TCGA-DG-A2KL-01 16 23568536 23568536 G A UBFD1 5'Flank 0.26 TCGA-DG-A2KL-01 16 2794531 2794531 C T SRRM2-AS1 5'Flank 0.11 TCGA-DG-A2KL-01 16 28854278 28854278 G A TUFM 3'UTR 0.27 TCGA-DG-A2KL-01 16 28950050 28950050 C A CD19 Missense_Mutation p.R515S 0.44 deleterious(0) benign(0.099) TCGA-DG-A2KL-01 16 30000973 30000973 G T TAOK2 3'Flank 0.22 TCGA-DG-A2KL-01 16 3544829 3544829 G A C16orf90 Missense_Mutation p.P32L 0.50 tolerated_low_confidence(0.09) benign(0.038) TCGA-DG-A2KL-01 16 56370671 56370671 G C GNAO1 Missense_Mutation p.E208Q 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-DG-A2KL-01 16 58149340 58149340 G A C16orf80 Missense_Mutation p.R100C 0.25 deleterious(0) benign(0.15) TCGA-DG-A2KL-01 16 61689423 61689423 G A CDH8 Silent p.L619L 0.28 TCGA-DG-A2KL-01 16 71423849 71423849 G C CALB2 3'UTR 0.29 TCGA-DG-A2KL-01 16 71764411 71764411 T C AP1G1 3'Flank 0.56 TCGA-DG-A2KL-01 16 72162565 72162565 C G PMFBP1 Missense_Mutation p.L693F 0.23 tolerated(0.11) benign(0.072) TCGA-DG-A2KL-01 17 18141887 18141887 C T LLGL1 Missense_Mutation p.R724C 0.53 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KL-01 17 19584766 19584767 - C SLC47A2 Frame_Shift_Ins p.L472Afs*31 0.29 TCGA-DG-A2KL-01 17 20156869 20156869 C T SPECC1 Missense_Mutation p.R884C 0.29 deleterious(0) possibly_damaging(0.677) TCGA-DG-A2KL-01 17 26100236 26100236 C T NOS2 Missense_Mutation p.E504K 0.35 tolerated(0.73) benign(0.003) TCGA-DG-A2KL-01 17 27049642 27049642 A T RPL23A Intron 0.14 TCGA-DG-A2KL-01 17 27086173 27086173 G C FAM222B Missense_Mutation p.I268M 0.17 deleterious(0) probably_damaging(0.994) TCGA-DG-A2KL-01 17 43101767 43101767 T C DCAKD 3'UTR 0.11 TCGA-DG-A2KL-01 17 4443660 4443660 C T MYBBP1A Missense_Mutation p.M1139I 0.22 deleterious(0) possibly_damaging(0.841) TCGA-DG-A2KL-01 17 61987021 61987021 C G CSHL1 3'Flank 0.42 TCGA-DG-A2KL-01 17 76160238 76160238 G A C17orf99 Missense_Mutation p.E145K 0.36 deleterious(0.03) benign(0.107) TCGA-DG-A2KL-01 17 79226316 79226316 G A SLC38A10 Silent p.L542L 0.35 TCGA-DG-A2KL-01 17 8408154 8408154 C T MYH10 Missense_Mutation p.E1153K 0.12 probably_damaging(0.996) TCGA-DG-A2KL-01 17 9783806 9783806 C T GLP2R Silent p.F419F 0.20 TCGA-DG-A2KL-01 18 15325663 15325663 C G RNU6-721P 5'Flank 0.20 TCGA-DG-A2KL-01 18 22804821 22804821 G C ZNF521 Missense_Mutation p.R1021G 0.17 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KL-01 18 43224034 43224034 C T SLC14A2 Silent p.F420F 0.25 TCGA-DG-A2KL-01 18 48442582 48442582 T C ME2 Missense_Mutation p.I146T 0.24 deleterious(0) probably_damaging(1) TCGA-DG-A2KL-01 18 60587256 60587256 G C PHLPP1 Missense_Mutation p.E957Q 0.15 tolerated(0.06) probably_damaging(0.911) TCGA-DG-A2KL-01 18 72345774 72345774 G C ZNF407 Missense_Mutation p.K933N 0.25 deleterious(0.02) benign(0.025) TCGA-DG-A2KL-01 19 12502748 12502748 G C ZNF799 Nonsense_Mutation p.S155* 0.18 TCGA-DG-A2KL-01 19 12958773 12958773 G C MAST1 Missense_Mutation p.E226Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KL-01 19 14153355 14153355 C T IL27RA Missense_Mutation p.R209W 0.23 deleterious(0.01) possibly_damaging(0.855) TCGA-DG-A2KL-01 19 18899092 18899092 C T COMP Missense_Mutation p.D302N 0.17 deleterious(0.01) probably_damaging(0.937) TCGA-DG-A2KL-01 19 2421914 2421914 C A TMPRSS9 Silent p.I705I 0.24 TCGA-DG-A2KL-01 19 2877793 2877793 C T ZNF556 Silent p.I279I 0.19 TCGA-DG-A2KL-01 19 2934414 2934414 C T ZNF77 Silent p.Q237Q 0.19 TCGA-DG-A2KL-01 19 3532541 3532541 G C FZR1 Missense_Mutation p.D379H 0.15 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KL-01 19 37835522 37835522 G A HKR1 5'UTR 0.28 TCGA-DG-A2KL-01 19 40581230 40581230 G A ZNF780A Silent p.L374L 0.08 TCGA-DG-A2KL-01 19 41704766 41704766 C T CYP2S1 Silent p.V269V 0.45 TCGA-DG-A2KL-01 19 43579627 43579627 G A PSG2 Silent p.S196S 0.12 TCGA-DG-A2KL-01 19 46057018 46057035 CACTAGGCAGCCGCCGCC - OPA3 Intron 0.29 TCGA-DG-A2KL-01 19 46283733 46283733 G A DMPK 5'UTR 0.11 TCGA-DG-A2KL-01 19 46997771 46997771 C G PNMAL2 Missense_Mutation p.E318Q 0.08 deleterious(0.03) benign(0.381) TCGA-DG-A2KL-01 19 46997873 46997873 C G PNMAL2 Missense_Mutation p.E284Q 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.484) TCGA-DG-A2KL-01 19 52272399 52272399 T G FPR2 Missense_Mutation p.F163C 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-DG-A2KL-01 19 52468777 52468777 C T ZNF350 Missense_Mutation p.R310Q 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-DG-A2KL-01 19 53116226 53116226 T A ZNF83 3'UTR 0.07 TCGA-DG-A2KL-01 19 54228694 54228694 G C MIR518E 5'Flank 0.20 TCGA-DG-A2KL-01 19 54466619 54466619 G C CACNG8 Missense_Mutation p.E75Q 0.25 tolerated(0.23) benign(0.3) TCGA-DG-A2KL-01 19 55263147 55263147 C T KIR2DL3 Silent p.I254I 0.15 TCGA-DG-A2KL-01 19 56029800 56029800 C T SSC5D Missense_Mutation p.S1386F 0.11 unknown(0) TCGA-DG-A2KL-01 19 57326753 57326753 G A PEG3 Silent p.Y1019Y 0.17 TCGA-DG-A2KL-01 19 5844263 5844263 C T FUT3 Silent p.A196A 0.12 TCGA-DG-A2KL-01 19 59068082 59068082 C T UBE2M Missense_Mutation p.E107K 0.10 deleterious(0) possibly_damaging(0.619) TCGA-DG-A2KL-01 19 7743859 7743859 G C CTD-3214H19.16 Missense_Mutation p.Q52H 0.07 deleterious_low_confidence(0.01) benign(0.387) TCGA-DG-A2KL-01 19 879963 879963 G A MED16 Silent p.L443L 0.21 TCGA-DG-A2KL-01 19 9226128 9226128 G C OR7G1 Silent p.V104V 0.11 TCGA-DG-A2KL-01 19 9362120 9362120 G T OR7E24 Missense_Mutation p.S134I 0.19 deleterious(0.03) benign(0.005) TCGA-DG-A2KL-01 1 10699179 10699179 G C CASZ1 Missense_Mutation p.D1700E 0.15 tolerated_low_confidence(0.39) unknown(0) TCGA-DG-A2KL-01 1 120928571 120928571 G A FCGR1B Intron 0.12 TCGA-DG-A2KL-01 1 1231134 1231134 C G ACAP3 Missense_Mutation p.V563L 0.09 tolerated(0.48) benign(0) TCGA-DG-A2KL-01 1 12353717 12353717 C A VPS13D Missense_Mutation p.Q1997K 0.17 benign(0.136) TCGA-DG-A2KL-01 1 12403016 12403016 C T VPS13D Silent p.L2931L 0.22 TCGA-DG-A2KL-01 1 1337574 1337574 G A MRPL20 Silent p.F113F 0.14 TCGA-DG-A2KL-01 1 150525459 150525459 C T ADAMTSL4 Missense_Mutation p.S55F 0.14 deleterious(0.01) possibly_damaging(0.583) TCGA-DG-A2KL-01 1 15684702 15684702 G A FHAD1 Missense_Mutation p.E100K 0.16 deleterious(0.04) possibly_damaging(0.69) TCGA-DG-A2KL-01 1 16258354 16258354 G A SPEN Silent p.E1873E 0.11 TCGA-DG-A2KL-01 1 16258747 16258747 G A SPEN Silent p.P2004P 0.22 TCGA-DG-A2KL-01 1 173886459 173886459 G A SERPINC1 5'UTR 0.10 TCGA-DG-A2KL-01 1 184765013 184765013 C T FAM129A Missense_Mutation p.E629K 0.19 tolerated(0.21) benign(0.167) TCGA-DG-A2KL-01 1 202795002 202795002 C G RP11-480I12.4 Missense_Mutation p.A123G 0.19 benign(0.057) TCGA-DG-A2KL-01 1 207697066 207697066 G A CR1 Missense_Mutation p.G200R 0.12 tolerated(0.56) benign(0.041) TCGA-DG-A2KL-01 1 20879728 20879728 G C FAM43B Missense_Mutation p.D88H 0.27 deleterious(0) possibly_damaging(0.874) TCGA-DG-A2KL-01 1 220152022 220152022 C G EPRS Missense_Mutation p.E1317Q 0.18 deleterious(0.04) benign(0.198) TCGA-DG-A2KL-01 1 220826469 220826469 C T MARK1 Missense_Mutation p.S588F 0.17 tolerated(0.08) possibly_damaging(0.852) TCGA-DG-A2KL-01 1 231396396 231396396 G A GNPAT Silent p.S135S 0.19 TCGA-DG-A2KL-01 1 235506499 235506499 C T GGPS1 3'UTR 0.17 TCGA-DG-A2KL-01 1 247061639 247061639 C T AHCTF1 Splice_Site p.X508_splice 0.19 TCGA-DG-A2KL-01 1 248224124 248224124 C T OR2L3 Silent p.L47L 0.13 TCGA-DG-A2KL-01 1 31532360 31532360 G A PUM1 Silent p.F18F 0.18 TCGA-DG-A2KL-01 1 35649400 35649400 C T SFPQ 3'UTR 0.11 TCGA-DG-A2KL-01 1 77095275 77095275 C T ST6GALNAC3 3'UTR 0.18 TCGA-DG-A2KL-01 1 97658667 97658667 C T DPYD Silent p.Q860Q 0.12 TCGA-DG-A2KL-01 20 18143136 18143136 C G CSRP2BP Silent p.G406G 0.29 TCGA-DG-A2KL-01 20 2293594 2293594 G A TGM3 Silent p.L197L 0.29 TCGA-DG-A2KL-01 20 31436686 31436686 C T MAPRE1 3'UTR 0.10 TCGA-DG-A2KL-01 20 33342596 33342596 G A NCOA6 Missense_Mutation p.S535L 0.52 possibly_damaging(0.801) TCGA-DG-A2KL-01 20 33862108 33862108 G - MMP24 Frame_Shift_Del p.W545* 0.36 TCGA-DG-A2KL-01 20 34778276 34778276 C T EPB41L1 Silent p.I368I 0.12 TCGA-DG-A2KL-01 20 35752160 35752160 G A MROH8 Nonsense_Mutation p.R637* 0.13 TCGA-DG-A2KL-01 20 36846737 36846737 C T KIAA1755 Missense_Mutation p.R863Q 0.43 tolerated(0.58) benign(0.011) TCGA-DG-A2KL-01 20 42161502 42161502 C T L3MBTL1 Silent p.T436T 0.27 TCGA-DG-A2KL-01 20 60697842 60697842 C T LSM14B Silent p.L40L 0.23 TCGA-DG-A2KL-01 22 22127167 22127167 C T MAPK1 Missense_Mutation p.D321N 0.34 deleterious(0) probably_damaging(0.95) TCGA-DG-A2KL-01 22 22707519 22707519 C T IGLV5-48 Missense_Mutation p.S36L 0.18 deleterious(0) benign(0.081) TCGA-DG-A2KL-01 22 24143248 24143248 G A SMARCB1 Silent p.K160K 0.16 TCGA-DG-A2KL-01 22 31283493 31283493 C T OSBP2 Silent p.R396R 0.29 TCGA-DG-A2KL-01 22 50355296 50355296 C T PIM3 Silent p.F151F 0.25 TCGA-DG-A2KL-01 22 50356955 50356955 C G PIM3 3'UTR 0.36 TCGA-DG-A2KL-01 22 50357181 50357181 C T PIM3 3'UTR 0.28 TCGA-DG-A2KL-01 2 155712718 155712718 C T KCNJ3 3'UTR 0.22 TCGA-DG-A2KL-01 2 220046965 220046965 G T FAM134A Missense_Mutation p.G416W 0.55 deleterious(0) probably_damaging(0.994) TCGA-DG-A2KL-01 2 220083460 220083460 C T ABCB6 5'UTR 0.21 TCGA-DG-A2KL-01 2 236649682 236649682 C T AGAP1 Missense_Mutation p.P129L 0.22 deleterious(0) probably_damaging(1) TCGA-DG-A2KL-01 2 242447516 242447516 G A STK25 5'UTR 0.16 TCGA-DG-A2KL-01 2 47703697 47703697 G A MSH2 Missense_Mutation p.A733T 0.11 deleterious(0) probably_damaging(0.936) TCGA-DG-A2KL-01 2 74513015 74513015 C T SLC4A5 Missense_Mutation p.E96K 0.09 tolerated(0.05) possibly_damaging(0.648) TCGA-DG-A2KL-01 2 74902683 74902683 C T SEMA4F Silent p.I468I 0.15 TCGA-DG-A2KL-01 3 119892198 119892198 C T GPR156 Silent p.P351P 0.29 TCGA-DG-A2KL-01 3 122278537 122278537 C T PARP9 5'UTR 0.16 TCGA-DG-A2KL-01 3 127379482 127379482 G A PODXL2 Missense_Mutation p.R204H 0.11 tolerated(0.55) benign(0) TCGA-DG-A2KL-01 3 133308409 133308409 C G CDV3 3'UTR 0.15 TCGA-DG-A2KL-01 3 137717717 137717717 G A CLDN18 Missense_Mutation p.V3M 0.12 tolerated(0.08) possibly_damaging(0.489) TCGA-DG-A2KL-01 3 142539879 142539879 C T PCOLCE2 Missense_Mutation p.G320S 0.30 deleterious(0) probably_damaging(0.985) TCGA-DG-A2KL-01 3 143708897 143708897 G A C3orf58 3'UTR 0.21 TCGA-DG-A2KL-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.39 deleterious(0.04) probably_damaging(0.96) TCGA-DG-A2KL-01 3 186262102 186262102 C G CRYGS Missense_Mutation p.G5A 0.27 tolerated(0.83) benign(0) TCGA-DG-A2KL-01 3 189612882 189612882 C G TP63 3'UTR 0.15 TCGA-DG-A2KL-01 3 195509254 195509254 G C MUC4 Missense_Mutation p.S3066C 0.08 probably_damaging(0.944) TCGA-DG-A2KL-01 3 42738348 42738348 G A HHATL Silent p.N344N 0.18 TCGA-DG-A2KL-01 3 4358681 4358681 G C SETMAR Missense_Mutation p.L602F 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-DG-A2KL-01 3 47162712 47162712 C T SETD2 Silent p.E1138E 0.21 TCGA-DG-A2KL-01 3 49154041 49154041 C G USP19 Splice_Site p.X376_splice 0.19 TCGA-DG-A2KL-01 3 57898234 57898234 C G SLMAP Missense_Mutation p.A575G 0.19 deleterious_low_confidence(0.01) benign(0.032) TCGA-DG-A2KL-01 4 101945870 101945870 C G PPP3CA 3'UTR 0.25 TCGA-DG-A2KL-01 4 104640872 104640872 C T TACR3 5'UTR 0.23 TCGA-DG-A2KL-01 4 113352413 113352413 C T ALPK1 Silent p.F570F 0.17 TCGA-DG-A2KL-01 4 123094304 123094304 A T KIAA1109 Missense_Mutation p.I71F 0.50 benign(0.216) TCGA-DG-A2KL-01 4 148554078 148554078 G A TMEM184C Silent p.L268L 0.21 TCGA-DG-A2KL-01 4 151821300 151821300 G A LRBA Missense_Mutation p.R609W 0.17 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KL-01 4 154216602 154216602 G A TRIM2 Silent p.L308L 0.17 TCGA-DG-A2KL-01 4 162841709 162841709 C G FSTL5 Missense_Mutation p.E86Q 0.36 tolerated(0.1) probably_damaging(0.968) TCGA-DG-A2KL-01 4 187003882 187003882 G T TLR3 Missense_Mutation p.D348Y 0.17 deleterious(0) probably_damaging(0.987) TCGA-DG-A2KL-01 4 37445135 37445135 C G KIAA1239 Missense_Mutation p.L509V 0.24 deleterious(0) probably_damaging(0.983) TCGA-DG-A2KL-01 4 71232800 71232800 C T SMR3A 3'UTR 0.21 TCGA-DG-A2KL-01 4 71232815 71232815 G C SMR3A 3'UTR 0.24 TCGA-DG-A2KL-01 4 81210129 81210129 C G FGF5 3'UTR 0.33 TCGA-DG-A2KL-01 4 83848702 83848702 C G LIN54 3'UTR 0.50 TCGA-DG-A2KL-01 4 9836556 9836556 G A SLC2A9 Silent p.T456T 0.23 TCGA-DG-A2KL-01 4 997845 997845 G A IDUA Silent p.A591A 0.21 TCGA-DG-A2KL-01 5 114515782 114515782 A G TRIM36 5'UTR 0.20 TCGA-DG-A2KL-01 5 132159867 132159867 C T SHROOM1 Missense_Mutation p.E496K 0.30 tolerated(0.06) possibly_damaging(0.686) TCGA-DG-A2KL-01 5 132211502 132211502 G C AFF4 3'UTR 0.14 TCGA-DG-A2KL-01 5 132212104 132212104 G A AFF4 3'UTR 0.15 TCGA-DG-A2KL-01 5 140215233 140215233 A G PCDHA7 Missense_Mutation p.E422G 0.21 tolerated_low_confidence(0.06) benign(0.011) TCGA-DG-A2KL-01 5 140215534 140215534 G A PCDHA7 Silent p.P522P 0.20 TCGA-DG-A2KL-01 5 140579541 140579541 G T PCDHB11 Missense_Mutation p.R65L 0.17 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-DG-A2KL-01 5 141017496 141017496 G C RELL2 5'UTR 0.21 TCGA-DG-A2KL-01 5 161326272 161326272 C A GABRA1 3'UTR 0.27 TCGA-DG-A2KL-01 5 171777403 171777403 C G SH3PXD2B Missense_Mutation p.E326Q 0.19 tolerated(0.17) possibly_damaging(0.623) TCGA-DG-A2KL-01 5 176011691 176011691 C A CDHR2 Missense_Mutation p.D803E 0.15 deleterious(0) probably_damaging(0.987) TCGA-DG-A2KL-01 5 176829182 176829182 C T F12 3'UTR 0.16 TCGA-DG-A2KL-01 5 32790940 32790941 - TTA NPR3 3'UTR 0.12 TCGA-DG-A2KL-01 5 56778417 56778417 G A ACTBL2 Nonsense_Mutation p.R40* 0.16 TCGA-DG-A2KL-01 5 71756370 71756370 G A ZNF366 Silent p.F318F 0.19 TCGA-DG-A2KL-01 6 100403985 100403985 G A MCHR2 Silent p.A13A 0.28 TCGA-DG-A2KL-01 6 107391786 107391786 C T BEND3 Silent p.L203L 0.37 TCGA-DG-A2KL-01 6 112575049 112575049 C G LAMA4 Intron 0.34 TCGA-DG-A2KL-01 6 123319253 123319253 C G CLVS2 Missense_Mutation p.L111V 0.20 tolerated(0.36) benign(0.158) TCGA-DG-A2KL-01 6 125144485 125144485 G A NKAIN2 3'UTR 0.29 TCGA-DG-A2KL-01 6 150570417 150570417 G A PPP1R14C 3'UTR 0.19 TCGA-DG-A2KL-01 6 152720920 152720920 G C SYNE1 Missense_Mutation p.I2356M 0.28 possibly_damaging(0.615) TCGA-DG-A2KL-01 6 26205062 26205062 G A HIST1H4E Missense_Mutation p.E64K 0.18 tolerated(0.07) benign(0.35) TCGA-DG-A2KL-01 6 26216847 26216847 G A HIST1H2BG Missense_Mutation p.P9S 0.12 deleterious_low_confidence(0.04) unknown(0) TCGA-DG-A2KL-01 6 2836096 2836096 C T SERPINB1 Silent p.L243L 0.17 TCGA-DG-A2KL-01 6 31599370 31599370 G A PRRC2A Missense_Mutation p.E974K 0.23 unknown(0) TCGA-DG-A2KL-01 6 32917176 32917176 A G HLA-DMA Missense_Mutation p.V218A 0.17 deleterious(0.01) possibly_damaging(0.9) TCGA-DG-A2KL-01 6 38690580 38690580 C T DNAH8 5'Flank 0.20 TCGA-DG-A2KL-01 6 41773771 41773771 C G USP49 Missense_Mutation p.L317F 0.21 tolerated(0.23) benign(0.043) TCGA-DG-A2KL-01 6 51613210 51613210 C G PKHD1 Missense_Mutation p.M3068I 0.45 tolerated(0.71) benign(0.004) TCGA-DG-A2KL-01 6 69728348 69728348 G T BAI3 Silent p.G688G 0.24 TCGA-DG-A2KL-01 6 7386054 7386054 C T CAGE1 Missense_Mutation p.E83K 0.20 tolerated(0.13) probably_damaging(0.953) TCGA-DG-A2KL-01 6 75813485 75813485 G A COL12A1 Silent p.I2769I 0.19 TCGA-DG-A2KL-01 7 103113123 103113123 C T RELN 3'UTR 0.25 TCGA-DG-A2KL-01 7 112461430 112461430 C G C7orf60 3'UTR 0.17 TCGA-DG-A2KL-01 7 137567265 137567265 G A CREB3L2 Silent p.L460L 0.12 TCGA-DG-A2KL-01 7 138566166 138566166 C G KIAA1549 Missense_Mutation p.K1399N 0.23 deleterious(0) probably_damaging(1) TCGA-DG-A2KL-01 7 143701561 143701561 G A OR6B1 Missense_Mutation p.A158T 0.16 deleterious(0.01) benign(0.312) TCGA-DG-A2KL-01 7 30721614 30721614 G A CRHR2 Missense_Mutation p.T76M 0.30 deleterious(0.01) probably_damaging(1) TCGA-DG-A2KL-01 7 35009108 35009108 G A DPY19L1 Silent p.L244L 0.15 TCGA-DG-A2KL-01 7 42006024 42006024 C T GLI3 Missense_Mutation p.E883K 0.52 tolerated(0.64) benign(0.254) TCGA-DG-A2KL-01 7 47315086 47315086 C T TNS3 3'UTR 0.11 TCGA-DG-A2KL-01 7 57188193 57188193 G C ZNF479 Nonsense_Mutation p.S310* 0.18 TCGA-DG-A2KL-01 7 6777427 6777427 G A PMS2CL RNA 0.22 TCGA-DG-A2KL-01 7 72416748 72416748 G A POM121 Intron 0.18 TCGA-DG-A2KL-01 7 87145822 87145822 C T ABCB1 Intron 0.15 TCGA-DG-A2KL-01 7 99313407 99313407 G A CYP3A7 Missense_Mutation p.P215L 0.14 tolerated(0.19) benign(0.001) TCGA-DG-A2KL-01 8 13356877 13356877 C T DLC1 Missense_Mutation p.R235Q 0.31 tolerated_low_confidence(0.15) benign(0.131) TCGA-DG-A2KL-01 8 1952464 1952464 C G KBTBD11 3'UTR 0.25 TCGA-DG-A2KL-01 8 2020570 2020570 C T MYOM2 Silent p.R313R 0.29 TCGA-DG-A2KL-01 8 25341481 25341481 G C CDCA2 Splice_Site p.X374_splice 0.16 TCGA-DG-A2KL-01 8 28218599 28218599 G A ZNF395 Silent p.L15L 0.14 TCGA-DG-A2KL-01 8 63973937 63973937 G A TTPA Silent p.F237F 0.21 TCGA-DG-A2KL-01 8 86049720 86049720 G A LRRCC1 Missense_Mutation p.R784H 0.20 deleterious(0.05) benign(0.081) TCGA-DG-A2KL-01 9 124546678 124546678 C G DAB2IP 3'UTR 0.09 TCGA-DG-A2KL-01 9 125273828 125273828 C T OR1J2 Missense_Mutation p.L250F 0.19 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DG-A2KL-01 9 129596683 129596683 G A ZBTB43 3'UTR 0.12 TCGA-DG-A2KL-01 9 132862907 132862907 G A GPR107 Splice_Site p.X314_splice 0.15 TCGA-DG-A2KL-01 9 136201270 136201270 C G SURF6 Missense_Mutation p.E88Q 0.25 tolerated(0.39) benign(0.006) TCGA-DG-A2KL-01 9 14116247 14116247 C T NFIB Silent p.L448L 0.16 TCGA-DG-A2KL-01 9 34257704 34257704 C G KIF24 Missense_Mutation p.R634T 0.14 deleterious(0.01) benign(0.412) TCGA-DG-A2KL-01 9 34656836 34656836 G A IL11RA Missense_Mutation p.D88N 0.18 tolerated(0.17) possibly_damaging(0.879) TCGA-DG-A2KL-01 9 37428495 37428495 C T GRHPR Missense_Mutation p.S140L 0.21 tolerated(0.08) benign(0.127) TCGA-DG-A2KL-01 9 74485111 74485111 G A ABHD17B Missense_Mutation p.L179F 0.35 deleterious(0) probably_damaging(0.947) TCGA-DG-A2KL-01 9 74526662 74526662 G A C9orf85 Silent p.Q4Q 0.07 TCGA-DG-A2KL-01 X 102631491 102631491 G A NGFRAP1 5'UTR 0.20 TCGA-DG-A2KL-01 X 106844623 106844623 C T FRMPD3 Silent p.L1151L 0.20 TCGA-DG-A2KL-01 X 112058973 112058973 T A AMOT Silent p.R335R 0.20 TCGA-DG-A2KL-01 X 11308548 11308548 G A ARHGAP6 Intron 0.18 TCGA-DG-A2KL-01 X 115574018 115574018 T A SLC6A14 Splice_Site p.X170_splice 0.19 TCGA-DG-A2KL-01 X 141291567 141291567 C T MAGEC2 Silent p.E69E 0.07 TCGA-DG-A2KL-01 X 14862067 14862067 G C FANCB Silent p.L734L 0.18 TCGA-DG-A2KL-01 X 150793972 150793972 C T PASD1 Missense_Mutation p.S200L 0.12 deleterious(0) benign(0.028) TCGA-DG-A2KL-01 X 30269126 30269126 C T MAGEB1 Silent p.G172G 0.18 TCGA-DG-A2KL-01 X 70794694 70794694 G C OGT 3'UTR 0.11 TCGA-DG-A2KL-01 X 70837348 70837348 G C CXCR3 Missense_Mutation p.L39V 0.12 deleterious_low_confidence(0) benign(0.012) TCGA-DG-A2KL-01 X 73960742 73960742 C T KIAA2022 Missense_Mutation p.R1217H 0.40 deleterious(0.04) benign(0.086) TCGA-DG-A2KL-01 X 76939255 76939255 C G ATRX Missense_Mutation p.R498T 0.20 benign(0.031) TCGA-DG-A2KL-01 X 83318984 83318984 A G RPS6KA6 3'UTR 0.30 TCGA-DG-A2KM-01 10 101964375 101964375 C G CHUK Missense_Mutation p.M465I 0.12 deleterious(0.03) benign(0.304) TCGA-DG-A2KM-01 10 103870840 103870840 G A LDB1 Nonsense_Mutation p.Q79* 0.15 TCGA-DG-A2KM-01 10 104162881 104162881 G A PSD 3'UTR 0.12 TCGA-DG-A2KM-01 10 112642770 112642770 G C PDCD4 Missense_Mutation p.G119A 0.11 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KM-01 10 115348620 115348620 G A NRAP 3'UTR 0.12 TCGA-DG-A2KM-01 10 120513962 120513962 G A CACUL1 Missense_Mutation p.P105S 0.12 tolerated_low_confidence(0.12) benign(0.001) TCGA-DG-A2KM-01 10 134941990 134941990 C T GPR123 Missense_Mutation p.R220W 0.21 deleterious(0) probably_damaging(0.994) TCGA-DG-A2KM-01 10 18966056 18966056 G C ARL5B 3'UTR 0.07 TCGA-DG-A2KM-01 10 23729371 23729371 G A OTUD1 Missense_Mutation p.V329M 0.10 tolerated(0.07) benign(0.403) TCGA-DG-A2KM-01 10 5788814 5788814 G C FAM208B Missense_Mutation p.E1144Q 0.10 deleterious(0.05) benign(0.023) TCGA-DG-A2KM-01 10 6054848 6054848 C G IL2RA Missense_Mutation p.R269T 0.09 deleterious(0.01) possibly_damaging(0.738) TCGA-DG-A2KM-01 10 61962779 61962779 G A ANK3 Missense_Mutation p.S458L 0.08 probably_damaging(0.937) TCGA-DG-A2KM-01 10 76936332 76936332 G C SAMD8 Missense_Mutation p.R377T 0.06 deleterious(0) probably_damaging(0.992) TCGA-DG-A2KM-01 10 890928 890928 G A LARP4B Silent p.F166F 0.09 TCGA-DG-A2KM-01 10 90668531 90668531 G C STAMBPL1 Missense_Mutation p.M107I 0.09 tolerated(0.22) benign(0.003) TCGA-DG-A2KM-01 11 102667841 102667841 C G MMP1 Missense_Mutation p.E135Q 0.12 tolerated(0.25) benign(0.055) TCGA-DG-A2KM-01 11 113815388 113815388 G A HTR3B Missense_Mutation p.G334E 0.14 tolerated(1) benign(0.038) TCGA-DG-A2KM-01 11 119050625 119050625 C G NLRX1 Missense_Mutation p.S632C 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-DG-A2KM-01 11 119369518 119369518 G C USP2-AS1 RNA 0.15 TCGA-DG-A2KM-01 11 18727641 18727641 G A IGSF22 Silent p.H1211H 0.11 TCGA-DG-A2KM-01 11 2423932 2423932 G A TSSC4 Silent p.T23T 0.07 TCGA-DG-A2KM-01 11 35211421 35211421 G C CD44 Missense_Mutation p.G159A 0.05 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KM-01 11 3655571 3655571 G C ART5 3'Flank 0.07 TCGA-DG-A2KM-01 11 47447758 47447758 C T PSMC3 Missense_Mutation p.E25K 0.15 tolerated(0.12) benign(0.001) TCGA-DG-A2KM-01 11 47858549 47858549 C T NUP160 Missense_Mutation p.D278N 0.22 tolerated(0.14) benign(0.432) TCGA-DG-A2KM-01 11 60637194 60637194 C G ZP1 Missense_Mutation p.S168C 0.06 deleterious(0.03) possibly_damaging(0.737) TCGA-DG-A2KM-01 11 61736081 61736081 G A AP003733.1 3'UTR 0.11 TCGA-DG-A2KM-01 11 62444225 62444225 C T UBXN1 Missense_Mutation p.G302R 0.11 tolerated_low_confidence(0.92) benign(0) TCGA-DG-A2KM-01 11 62445526 62445526 C T UBXN1 Missense_Mutation p.E119K 0.06 deleterious(0.01) probably_damaging(0.971) TCGA-DG-A2KM-01 11 62549740 62549740 C G TAF6L Missense_Mutation p.I254M 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-DG-A2KM-01 11 63517611 63517611 C A RTN3 Missense_Mutation p.F893L 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-DG-A2KM-01 11 64082560 64082560 C G ESRRA Nonsense_Mutation p.S277* 0.15 TCGA-DG-A2KM-01 11 65143642 65143642 C T SLC25A45 3'UTR 0.10 TCGA-DG-A2KM-01 11 76508149 76508149 C T TSKU 3'UTR 0.09 TCGA-DG-A2KM-01 11 88780994 88780994 A G GRM5 Missense_Mutation p.V16A 0.07 tolerated(0.27) benign(0.001) TCGA-DG-A2KM-01 12 107371572 107371572 C T MTERFD3 Silent p.L307L 0.07 TCGA-DG-A2KM-01 12 40717102 40717102 C T LRRK2 Missense_Mutation p.L1884F 0.13 tolerated(0.06) probably_damaging(0.994) TCGA-DG-A2KM-01 12 49717468 49717468 C G TROAP Missense_Mutation p.S26C 0.10 tolerated(0.12) benign(0.1) TCGA-DG-A2KM-01 12 49719924 49719924 G C TROAP Missense_Mutation p.E233D 0.11 tolerated(0.35) benign(0.067) TCGA-DG-A2KM-01 12 50484356 50484356 C T SMARCD1 Silent p.I372I 0.14 TCGA-DG-A2KM-01 12 52841083 52841083 G A KRT6B Missense_Mutation p.S529F 0.06 tolerated(0.19) unknown(0) TCGA-DG-A2KM-01 12 56811443 56811443 G A TIMELESS 3'UTR 0.26 TCGA-DG-A2KM-01 12 57628084 57628084 C G SHMT2 Silent p.L485L 0.12 TCGA-DG-A2KM-01 12 64536255 64536255 G A SRGAP1 Missense_Mutation p.E1021K 0.14 tolerated_low_confidence(0.07) benign(0.386) TCGA-DG-A2KM-01 12 8543365 8543365 G C LINC00937 RNA 0.30 TCGA-DG-A2KM-01 12 93157862 93157862 C G PLEKHG7 Missense_Mutation p.P276A 0.09 tolerated(0.27) benign(0.003) TCGA-DG-A2KM-01 13 20048167 20048167 G A TPTE2 Silent p.A93A 0.06 TCGA-DG-A2KM-01 13 24798248 24798248 G A SPATA13 Missense_Mutation p.G394D 0.08 tolerated_low_confidence(0.39) benign(0.019) TCGA-DG-A2KM-01 14 101348765 101348765 C T RTL1 Silent p.V787V 0.12 TCGA-DG-A2KM-01 14 21829300 21829300 G A SUPT16H Silent p.F622F 0.12 TCGA-DG-A2KM-01 14 22580871 22580871 G A TRAV25 Missense_Mutation p.E72K 0.31 tolerated(0.12) probably_damaging(0.921) TCGA-DG-A2KM-01 14 23512513 23512513 C G PSMB11 3'UTR 0.11 TCGA-DG-A2KM-01 14 24781050 24781050 G C LTB4R2 3'UTR 0.11 TCGA-DG-A2KM-01 14 37992682 37992682 C G MIPOL1 Intron 0.10 TCGA-DG-A2KM-01 14 75747569 75747569 C T FOS Silent p.F195F 0.08 TCGA-DG-A2KM-01 14 75747739 75747739 C T FOS Missense_Mutation p.S252L 0.11 tolerated(0.16) benign(0) TCGA-DG-A2KM-01 14 76249592 76249592 C T TTLL5 Missense_Mutation p.S902F 0.09 deleterious(0.02) possibly_damaging(0.498) TCGA-DG-A2KM-01 15 20170187 20170187 C T IGHV1OR15-9 Missense_Mutation p.E29K 0.14 deleterious(0) probably_damaging(0.936) TCGA-DG-A2KM-01 15 25932912 25932912 G A ATP10A Missense_Mutation p.H1077Y 0.13 deleterious(0.02) possibly_damaging(0.791) TCGA-DG-A2KM-01 15 41137133 41137133 C T SPINT1 Silent p.F127F 0.15 TCGA-DG-A2KM-01 15 42734469 42734469 G A ZNF106 Missense_Mutation p.H1166Y 0.12 tolerated(0.19) benign(0.316) TCGA-DG-A2KM-01 15 74625601 74625601 G C CCDC33 Intron 0.18 TCGA-DG-A2KM-01 15 75760878 75760878 G C PTPN9 3'UTR 0.14 TCGA-DG-A2KM-01 15 78894297 78894297 G A CHRNA3 Silent p.P229P 0.14 TCGA-DG-A2KM-01 15 82336662 82336662 G C MEX3B Missense_Mutation p.I183M 0.10 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KM-01 15 85669515 85669515 G A PDE8A Silent p.L721L 0.13 TCGA-DG-A2KM-01 15 88423498 88423498 T C NTRK3 Intron 0.10 TCGA-DG-A2KM-01 16 18820490 18820490 G C SMG1 3'UTR 0.12 TCGA-DG-A2KM-01 16 19553321 19553321 C G CCP110 Missense_Mutation p.S721C 0.12 deleterious(0) probably_damaging(0.993) TCGA-DG-A2KM-01 16 2050434 2050434 G A ZNF598 Missense_Mutation p.S417L 0.10 benign(0.003) TCGA-DG-A2KM-01 16 20838394 20838394 C T AC004381.6 Missense_Mutation p.T279M 0.10 deleterious(0) probably_damaging(1) TCGA-DG-A2KM-01 16 2652880 2652880 C G PDPK1 3'UTR 0.08 TCGA-DG-A2KM-01 16 30198752 30198752 T C CORO1A Missense_Mutation p.V229A 0.07 deleterious(0.02) benign(0.365) TCGA-DG-A2KM-01 16 30371123 30371123 G C TBC1D10B Missense_Mutation p.I437M 0.11 deleterious(0.02) possibly_damaging(0.895) TCGA-DG-A2KM-01 16 30409681 30409681 C G ZNF48 Silent p.L370L 0.12 TCGA-DG-A2KM-01 16 3786798 3786798 G C CREBBP Missense_Mutation p.I1471M 0.11 unknown(0) TCGA-DG-A2KM-01 16 66956094 66956094 C T RRAD Missense_Mutation p.R271Q 0.11 deleterious(0.02) probably_damaging(0.941) TCGA-DG-A2KM-01 16 67265247 67265247 G A FHOD1 Silent p.S837S 0.15 TCGA-DG-A2KM-01 16 72094721 72094721 G C HP Missense_Mutation p.E385Q 0.09 tolerated(0.09) possibly_damaging(0.589) TCGA-DG-A2KM-01 16 72138925 72138925 G C DHX38 Splice_Site p.X718_splice 0.23 TCGA-DG-A2KM-01 17 11671917 11671917 G A DNAH9 Missense_Mutation p.E2440K 0.08 benign(0.211) TCGA-DG-A2KM-01 17 16706557 16706557 G A CCDC144A 3'UTR 0.06 TCGA-DG-A2KM-01 17 2236281 2236281 C T TSR1 Missense_Mutation p.E427K 0.11 tolerated(0.34) benign(0.097) TCGA-DG-A2KM-01 17 25958208 25958208 C A LGALS9 5'UTR 0.06 TCGA-DG-A2KM-01 17 29857424 29857424 C G RAB11FIP4 Silent p.L578L 0.16 TCGA-DG-A2KM-01 17 3716346 3716346 C T C17orf85 Missense_Mutation p.E619K 0.12 deleterious_low_confidence(0.02) unknown(0) TCGA-DG-A2KM-01 17 37681036 37681036 G C CDK12 Missense_Mutation p.E1069Q 0.15 probably_damaging(0.918) TCGA-DG-A2KM-01 17 39785217 39785217 C G KRT17 5'Flank 0.12 TCGA-DG-A2KM-01 17 41004355 41004355 C G AOC3 Missense_Mutation p.S332C 0.04 tolerated(0.11) probably_damaging(0.994) TCGA-DG-A2KM-01 17 42463033 42463033 C G ITGA2B Missense_Mutation p.E154Q 0.09 tolerated(0.35) benign(0.044) TCGA-DG-A2KM-01 17 48603349 48603349 C T MYCBPAP Silent p.V673V 0.16 TCGA-DG-A2KM-01 17 49281154 49281154 C G MBTD1 Missense_Mutation p.R246T 0.11 deleterious(0.01) benign(0.026) TCGA-DG-A2KM-01 17 56432187 56432188 - G RNF43 3'UTR 0.21 TCGA-DG-A2KM-01 17 61683707 61683707 G A TACO1 Missense_Mutation p.R141Q 0.08 deleterious(0.05) possibly_damaging(0.861) TCGA-DG-A2KM-01 17 6348471 6348471 G A FAM64A Missense_Mutation p.R14Q 0.14 tolerated(0.38) benign(0.096) TCGA-DG-A2KM-01 17 67075029 67075029 G A ABCA6 3'UTR 0.20 TCGA-DG-A2KM-01 17 73760097 73760097 G C GALK1 Missense_Mutation p.S79C 0.17 tolerated(0.18) benign(0.005) TCGA-DG-A2KM-01 17 80352367 80352367 C T OGFOD3 Silent p.P292P 0.30 TCGA-DG-A2KM-01 18 46798640 46798640 C T DYM Missense_Mutation p.E387K 0.15 tolerated(0.1) possibly_damaging(0.844) TCGA-DG-A2KM-01 18 56203560 56203560 C T ALPK2 Missense_Mutation p.E1287K 0.11 tolerated(0.25) benign(0.027) TCGA-DG-A2KM-01 18 748002 748002 C T YES1 Missense_Mutation p.E130K 0.08 tolerated(0.35) benign(0.021) TCGA-DG-A2KM-01 19 10477149 10477149 G C TYK2 Silent p.L191L 0.08 TCGA-DG-A2KM-01 19 10812884 10812884 G C QTRT1 Missense_Mutation p.E135D 0.07 tolerated(0.32) benign(0.003) TCGA-DG-A2KM-01 19 14073842 14073842 G C RFX1 Missense_Mutation p.L912V 0.05 deleterious(0.01) benign(0.256) TCGA-DG-A2KM-01 19 18976135 18976135 G C UPF1 Missense_Mutation p.Q965H 0.11 tolerated(0.13) benign(0.018) TCGA-DG-A2KM-01 19 30156563 30156563 C G PLEKHF1 Intron 0.07 TCGA-DG-A2KM-01 19 33470351 33470351 G C RHPN2 3'UTR 0.08 TCGA-DG-A2KM-01 19 33904546 33904546 G A PEPD Silent p.L225L 0.11 TCGA-DG-A2KM-01 19 38380730 38380730 G A WDR87 Missense_Mutation p.S1155F 0.17 benign(0.315) TCGA-DG-A2KM-01 19 44303064 44303064 C T LYPD5 Silent p.A90A 0.08 TCGA-DG-A2KM-01 19 46002642 46002642 G A PPM1N Silent p.A304A 0.09 TCGA-DG-A2KM-01 19 46095370 46095370 G C GPR4 5'UTR 0.11 TCGA-DG-A2KM-01 19 46974175 46974175 C G PNMAL1 Missense_Mutation p.E40Q 0.14 tolerated(0.11) possibly_damaging(0.607) TCGA-DG-A2KM-01 19 47151638 47151638 G A DACT3 3'UTR 0.14 TCGA-DG-A2KM-01 19 48244378 48244378 G A EHD2 Missense_Mutation p.E441K 0.15 tolerated(0.06) benign(0.158) TCGA-DG-A2KM-01 19 48955988 48955988 C G GRWD1 Missense_Mutation p.F349L 0.09 deleterious(0.05) probably_damaging(0.914) TCGA-DG-A2KM-01 19 49110455 49110455 G C SPACA4 Missense_Mutation p.E74Q 0.07 tolerated(0.06) benign(0.25) TCGA-DG-A2KM-01 19 49622082 49622082 C T C19orf73 Silent p.T66T 0.10 TCGA-DG-A2KM-01 19 5700815 5700815 G C LONP1 Silent p.V497V 0.15 TCGA-DG-A2KM-01 19 7696665 7696665 G C PCP2 Silent p.L107L 0.13 TCGA-DG-A2KM-01 1 100843126 100843126 G C CDC14A Silent p.L55L 0.08 TCGA-DG-A2KM-01 1 110734776 110734776 C T SLC6A17 Silent p.L349L 0.13 TCGA-DG-A2KM-01 1 11217277 11217277 C A MTOR Missense_Mutation p.M1467I 0.23 tolerated(0.22) benign(0) TCGA-DG-A2KM-01 1 116379225 116379225 G C NHLH2 3'Flank 0.09 TCGA-DG-A2KM-01 1 144864173 144864173 G A PDE4DIP Silent p.F1974F 0.05 TCGA-DG-A2KM-01 1 145209290 145209290 C G RP11-458D21.5 5'UTR 0.08 TCGA-DG-A2KM-01 1 151378481 151378481 G C POGZ Missense_Mutation p.F1010L 0.07 tolerated(0.37) probably_damaging(0.977) TCGA-DG-A2KM-01 1 151671478 151671478 C G SNX27 3'UTR 0.15 TCGA-DG-A2KM-01 1 152277071 152277071 G A FLG Nonsense_Mutation p.Q3431* 0.10 TCGA-DG-A2KM-01 1 152277550 152277550 G C FLG Missense_Mutation p.S3271C 0.10 unknown(0) TCGA-DG-A2KM-01 1 155235711 155235711 G C CLK2 Silent p.L290L 0.06 TCGA-DG-A2KM-01 1 155979343 155979343 C T SSR2 Silent p.T180T 0.12 TCGA-DG-A2KM-01 1 174933923 174933923 G A RABGAP1L 5'UTR 0.12 TCGA-DG-A2KM-01 1 1920084 1920084 C G C1orf222 Missense_Mutation p.E46Q 0.17 tolerated(0.16) possibly_damaging(0.859) TCGA-DG-A2KM-01 1 197396643 197396643 G A CRB1 Missense_Mutation p.D730N 0.09 tolerated(0.16) benign(0.014) TCGA-DG-A2KM-01 1 200312409 200312409 A T LINC00862 RNA 0.14 TCGA-DG-A2KM-01 1 203797541 203797541 C G ZC3H11A Missense_Mutation p.P97A 0.16 deleterious(0) probably_damaging(0.993) TCGA-DG-A2KM-01 1 204587429 204587429 G A LRRN2 Silent p.L564L 0.19 TCGA-DG-A2KM-01 1 214542890 214542890 G A PTPN14 Missense_Mutation p.L1061F 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-DG-A2KM-01 1 233519104 233519104 G A MLK4 3'UTR 0.07 TCGA-DG-A2KM-01 1 241755491 241755491 C T KMO 3'UTR 0.09 TCGA-DG-A2KM-01 1 24996805 24996805 G A SRRM1 Missense_Mutation p.R800K 0.07 unknown(0) TCGA-DG-A2KM-01 1 26510931 26510931 C T CNKSR1 Missense_Mutation p.P347L 0.07 tolerated(0.21) benign(0.006) TCGA-DG-A2KM-01 1 36307229 36307229 G C AGO4 Missense_Mutation p.E685Q 0.11 deleterious(0) probably_damaging(1) TCGA-DG-A2KM-01 1 3807432 3807432 C T C1orf174 Missense_Mutation p.E107K 0.09 tolerated(0.68) benign(0.024) TCGA-DG-A2KM-01 1 75055435 75055435 C G C1orf173 Missense_Mutation p.E686Q 0.19 deleterious(0.03) possibly_damaging(0.636) TCGA-DG-A2KM-01 1 93620280 93620280 G C TMED5 Missense_Mutation p.Q213E 0.15 deleterious(0) probably_damaging(0.997) TCGA-DG-A2KM-01 1 9630370 9630370 C T SLC25A33 Silent p.F123F 0.11 TCGA-DG-A2KM-01 1 983046 983046 G C AGRN Missense_Mutation p.V1204L 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-DG-A2KM-01 20 1288628 1288628 G A SNPH 3'UTR 0.28 TCGA-DG-A2KM-01 20 21494220 21494220 C T NKX2-2 Missense_Mutation p.E30K 0.07 tolerated(0.57) benign(0.125) TCGA-DG-A2KM-01 20 34218392 34218392 C G CPNE1 Missense_Mutation p.L362F 0.09 deleterious(0) probably_damaging(1) TCGA-DG-A2KM-01 20 37182681 37182681 C G RALGAPB Missense_Mutation p.L1112V 0.11 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KM-01 20 44869843 44869843 G A CDH22 Silent p.G103G 0.21 TCGA-DG-A2KM-01 20 57428615 57428615 G C GNAS Missense_Mutation p.E99Q 0.06 deleterious_low_confidence(0) unknown(0) TCGA-DG-A2KM-01 20 58564060 58564060 G C CDH26 Missense_Mutation p.R375S 0.09 tolerated(0.99) benign(0.009) TCGA-DG-A2KM-01 20 9460929 9460929 G C PLCB4 3'UTR 0.07 TCGA-DG-A2KM-01 22 21834057 21834057 C G PI4KAP2 RNA 0.13 TCGA-DG-A2KM-01 22 22277740 22277740 C T PPM1F Missense_Mutation p.D364N 0.11 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KM-01 22 22906279 22906279 C T LL22NC03-63E9.3 3'UTR 0.15 TCGA-DG-A2KM-01 22 24376909 24376909 G C GSTT1 Silent p.L147L 0.16 TCGA-DG-A2KM-01 22 24487584 24487584 C G CABIN1 Missense_Mutation p.F1191L 0.15 deleterious(0) benign(0.253) TCGA-DG-A2KM-01 22 29879485 29879485 G A NEFH Silent p.L335L 0.14 TCGA-DG-A2KM-01 22 31601096 31601096 C G RNF185 3'UTR 0.15 TCGA-DG-A2KM-01 22 31602025 31602025 C G RNF185 3'UTR 0.25 TCGA-DG-A2KM-01 22 37578303 37578303 C T C1QTNF6 Silent p.E254E 0.11 TCGA-DG-A2KM-01 22 38245448 38245448 G A EIF3L 5'UTR 0.07 TCGA-DG-A2KM-01 2 102642604 102642604 G A IL1R2 Missense_Mutation p.E307K 0.15 deleterious(0) probably_damaging(0.998) TCGA-DG-A2KM-01 2 112786126 112786126 G C MERTK Missense_Mutation p.L895F 0.14 tolerated(0.26) benign(0.197) TCGA-DG-A2KM-01 2 11355669 11355669 C A ROCK2 Nonsense_Mutation p.E522* 0.08 TCGA-DG-A2KM-01 2 145157221 145157221 G A ZEB2 Silent p.V511V 0.12 TCGA-DG-A2KM-01 2 165550784 165550784 C G COBLL1 Missense_Mutation p.D1078H 0.12 deleterious(0) possibly_damaging(0.832) TCGA-DG-A2KM-01 2 167289236 167289236 C T SCN7A Silent p.V728V 0.15 TCGA-DG-A2KM-01 2 170044576 170044576 G C LRP2 Missense_Mutation p.H3078D 0.12 possibly_damaging(0.507) TCGA-DG-A2KM-01 2 170802807 170802807 G A UBR3 Missense_Mutation p.D939N 0.08 tolerated(0.17) benign(0.322) TCGA-DG-A2KM-01 2 202483811 202483811 C G ALS2CR11 Missense_Mutation p.D15H 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-DG-A2KM-01 2 213886824 213886824 C G IKZF2 Missense_Mutation p.G202A 0.11 deleterious(0) probably_damaging(1) TCGA-DG-A2KM-01 2 225244772 225244772 C G FAM124B Missense_Mutation p.E296Q 0.18 tolerated(0.14) benign(0.441) TCGA-DG-A2KM-01 2 225662584 225662584 G A DOCK10 Missense_Mutation p.H1537Y 0.06 deleterious(0) probably_damaging(0.995) TCGA-DG-A2KM-01 2 233405328 233405328 G A CHRNG Missense_Mutation p.R86H 0.09 deleterious(0) probably_damaging(0.974) TCGA-DG-A2KM-01 2 26204127 26204127 G C KIF3C Missense_Mutation p.F220L 0.07 probably_damaging(0.996) TCGA-DG-A2KM-01 2 58456988 58456988 C T FANCL Silent p.L59L 0.08 TCGA-DG-A2KM-01 2 70903735 70903735 C G ADD2 Intron 0.25 TCGA-DG-A2KM-01 2 74908852 74908852 C G SEMA4F 3'UTR 0.16 TCGA-DG-A2KM-01 2 84756046 84756046 G C DNAH6 Missense_Mutation p.E140Q 0.15 tolerated_low_confidence(0.39) benign(0.005) TCGA-DG-A2KM-01 3 101369395 101369395 G A ZBTB11 3'UTR 0.08 TCGA-DG-A2KM-01 3 118649027 118649027 C T IGSF11 Missense_Mutation p.A50T 0.06 tolerated(0.06) probably_damaging(0.995) TCGA-DG-A2KM-01 3 118945761 118945761 G A B4GALT4 Silent p.L127L 0.14 TCGA-DG-A2KM-01 3 120469678 120469678 C G GTF2E1 Missense_Mutation p.F93L 0.09 deleterious(0.01) possibly_damaging(0.871) TCGA-DG-A2KM-01 3 120976088 120976088 C G STXBP5L Silent p.L580L 0.10 TCGA-DG-A2KM-01 3 124646646 124646646 G A MUC13 Missense_Mutation p.P82S 0.08 tolerated_low_confidence(0.52) benign(0) TCGA-DG-A2KM-01 3 126710235 126710235 G C PLXNA1 Missense_Mutation p.Q401H 0.09 deleterious(0.01) possibly_damaging(0.639) TCGA-DG-A2KM-01 3 130720614 130720614 C G ATP2C1 Intron 0.06 TCGA-DG-A2KM-01 3 133698338 133698338 G C SLCO2A1 Missense_Mutation p.S74C 0.09 deleterious(0) probably_damaging(1) TCGA-DG-A2KM-01 3 134077427 134077427 C G AMOTL2 Missense_Mutation p.D747H 0.14 tolerated(0.05) probably_damaging(0.913) TCGA-DG-A2KM-01 3 172241220 172241220 C T TNFSF10 5'UTR 0.17 TCGA-DG-A2KM-01 3 183585786 183585786 C T PARL Missense_Mutation p.R63Q 0.12 deleterious(0.04) benign(0.266) TCGA-DG-A2KM-01 3 194118225 194118225 G C GP5 Missense_Mutation p.L263V 0.14 deleterious(0) possibly_damaging(0.459) TCGA-DG-A2KM-01 4 119554781 119554781 C T RP11-384K6.6 RNA 0.14 TCGA-DG-A2KM-01 4 187153292 187153292 C G KLKB1 Missense_Mutation p.Q24E 0.13 tolerated(0.41) possibly_damaging(0.89) TCGA-DG-A2KM-01 4 1993328 1993328 C G NELFA Missense_Mutation p.E120Q 0.08 tolerated(0.08) benign(0.162) TCGA-DG-A2KM-01 4 7058164 7058164 C T TADA2B 3'UTR 0.14 TCGA-DG-A2KM-01 4 71063015 71063015 C G ODAM Missense_Mutation p.Q40E 0.19 deleterious(0.02) benign(0.003) TCGA-DG-A2KM-01 4 76598498 76598498 C G G3BP2 5'UTR 0.11 TCGA-DG-A2KM-01 4 78783959 78783959 G C MRPL1 5'UTR 0.16 TCGA-DG-A2KM-01 5 127653955 127653955 C T FBN2 Missense_Mutation p.E1535K 0.09 deleterious(0) probably_damaging(1) TCGA-DG-A2KM-01 5 137771356 137771356 C G KDM3B Silent p.L1751L 0.05 TCGA-DG-A2KM-01 5 137904654 137904654 C G HSPA9 Missense_Mutation p.Q165H 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DG-A2KM-01 5 140167072 140167072 C T PCDHA1 Silent p.S399S 0.10 TCGA-DG-A2KM-01 5 140626780 140626780 C T PCDHB15 Missense_Mutation p.A545V 0.04 tolerated_low_confidence(0.05) possibly_damaging(0.508) TCGA-DG-A2KM-01 5 141035268 141035268 G A ARAP3 Nonsense_Mutation p.Q1344* 0.20 TCGA-DG-A2KM-01 5 14287156 14287156 C T TRIO Missense_Mutation p.S175F 0.08 probably_damaging(0.996) TCGA-DG-A2KM-01 5 14485296 14485296 G A TRIO Missense_Mutation p.R2259Q 0.20 benign(0.007) TCGA-DG-A2KM-01 5 146795360 146795360 C G DPYSL3 Missense_Mutation p.K244N 0.12 deleterious(0.01) benign(0.041) TCGA-DG-A2KM-01 5 149676732 149676732 G A ARSI 3'UTR 0.17 TCGA-DG-A2KM-01 5 154278076 154278076 C G GEMIN5 Missense_Mutation p.R1090T 0.13 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KM-01 5 167626875 167626875 C T TENM2 Missense_Mutation p.H1057Y 0.10 deleterious(0) probably_damaging(0.943) TCGA-DG-A2KM-01 5 32239251 32239251 G A MTMR12 Silent p.L400L 0.09 TCGA-DG-A2KM-01 5 60050452 60050452 C T ELOVL7 Silent p.%3D 0.09 TCGA-DG-A2KM-01 5 68463048 68463048 C T CCNB1 5'UTR 0.07 TCGA-DG-A2KM-01 5 71740119 71740119 C G ZNF366 Splice_Site p.X567_splice 0.19 TCGA-DG-A2KM-01 5 72469377 72469377 G C TMEM174 Missense_Mutation p.E103Q 0.09 tolerated(0.38) possibly_damaging(0.714) TCGA-DG-A2KM-01 5 77784642 77784642 C G LHFPL2 3'UTR 0.11 TCGA-DG-A2KM-01 5 796012 796012 C T ZDHHC11 3'UTR 0.08 TCGA-DG-A2KM-01 5 89985773 89985773 G A GPR98 Missense_Mutation p.E2196K 0.12 possibly_damaging(0.874) TCGA-DG-A2KM-01 6 118606347 118606347 G A SLC35F1 Missense_Mutation p.G283E 0.14 tolerated(0.14) benign(0.246) TCGA-DG-A2KM-01 6 119136454 119136454 C T MCM9 Missense_Mutation p.E989K 0.14 tolerated_low_confidence(0.99) benign(0.002) TCGA-DG-A2KM-01 6 135539487 135539487 A G MYB 3'UTR 0.17 TCGA-DG-A2KM-01 6 13595753 13595753 G C SIRT5 Missense_Mutation p.E174Q 0.14 tolerated(0.32) benign(0.013) TCGA-DG-A2KM-01 6 150023076 150023076 G A LATS1 Nonsense_Mutation p.R63* 0.14 TCGA-DG-A2KM-01 6 160222178 160222178 G C PNLDC1 Missense_Mutation p.K45N 0.11 deleterious(0) probably_damaging(0.999) TCGA-DG-A2KM-01 6 18222454 18222454 G A KDM1B 3'UTR 0.12 TCGA-DG-A2KM-01 6 28543706 28543706 G C SCAND3 Missense_Mutation p.A259G 0.05 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-DG-A2KM-01 6 29556723 29556723 G C OR2H2 3'UTR 0.11 TCGA-DG-A2KM-01 6 30568698 30568698 C T PPP1R10 3'UTR 0.19 TCGA-DG-A2KM-01 6 31378883 31378883 G C MICA Missense_Mutation p.E120D 0.13 tolerated(0.05) probably_damaging(0.909) TCGA-DG-A2KM-01 6 32805352 32805352 G C TAP2 Silent p.A190A 0.14 TCGA-DG-A2KM-01 6 82457524 82457524 T A FAM46A 3'UTR 0.16 TCGA-DG-A2KM-01 7 100841554 100841554 C T MOGAT3 Missense_Mutation p.E196K 0.07 deleterious(0) probably_damaging(1) TCGA-DG-A2KM-01 7 100853820 100853820 C T PLOD3 Missense_Mutation p.R498Q 0.13 deleterious(0) possibly_damaging(0.544) TCGA-DG-A2KM-01 7 105669022 105669022 C T CDHR3 Silent p.V766V 0.15 TCGA-DG-A2KM-01 7 127669932 127669932 G A LRRC4 Silent p.V254V 0.10 TCGA-DG-A2KM-01 7 148483656 148483656 G C CUL1 Missense_Mutation p.E438Q 0.09 deleterious(0) possibly_damaging(0.727) TCGA-DG-A2KM-01 7 149425726 149425726 G A KRBA1 Silent p.P529P 0.11 TCGA-DG-A2KM-01 7 26883654 26883654 G A SKAP2 Missense_Mutation p.S101F 0.21 deleterious(0.04) benign(0.14) TCGA-DG-A2KM-01 7 32914757 32914757 C T KBTBD2 Missense_Mutation p.M61I 0.08 tolerated(0.15) benign(0.023) TCGA-DG-A2KM-01 7 77538189 77538189 G A PHTF2 Silent p.L141L 0.14 TCGA-DG-A2KM-01 7 89936214 89936214 G A C7orf63 Splice_Site p.X756_splice 0.11 TCGA-DG-A2KM-01 7 97937123 97937123 G C BAIAP2L1 Missense_Mutation p.I347M 0.08 deleterious(0) probably_damaging(0.988) TCGA-DG-A2KM-01 7 99773977 99773977 G A GPC2 Missense_Mutation p.R60W 0.09 deleterious(0) probably_damaging(0.991) TCGA-DG-A2KM-01 8 100523624 100523624 G T VPS13B Missense_Mutation p.G1531V 0.21 tolerated(0.12) probably_damaging(0.996) TCGA-DG-A2KM-01 8 117868472 117868472 C T RAD21 Missense_Mutation p.M290I 0.06 tolerated(0.52) benign(0.006) TCGA-DG-A2KM-01 8 120233941 120233941 C T MAL2 Silent p.L83L 0.04 TCGA-DG-A2KM-01 8 126056100 126056100 C T KIAA0196 Silent p.K939K 0.08 TCGA-DG-A2KM-01 8 13356682 13356682 G C DLC1 Nonsense_Mutation p.S300* 0.13 TCGA-DG-A2KM-01 8 145556955 145556955 G C SCRT1 Missense_Mutation p.F313L 0.16 deleterious(0) unknown(0) TCGA-DG-A2KM-01 8 24256947 24256947 C G ADAMDEC1 Nonsense_Mutation p.S324* 0.07 TCGA-DG-A2KM-01 8 27965491 27965491 G C ELP3 Missense_Mutation p.E131Q 0.07 deleterious(0.02) possibly_damaging(0.903) TCGA-DG-A2KM-01 8 38965217 38965217 C G ADAM32 5'UTR 0.16 TCGA-DG-A2KM-01 8 42196096 42196096 C T POLB 5'UTR 0.08 TCGA-DG-A2KM-01 8 65495067 65495067 G C BHLHE22 3'UTR 0.13 TCGA-DG-A2KM-01 8 77768238 77768238 C T ZFHX4 Silent p.F3027F 0.12 TCGA-DG-A2KM-01 8 81399769 81399769 C G ZBTB10 Missense_Mutation p.L242V 0.20 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-DG-A2KM-01 9 114454375 114454375 G C C9orf84 Silent p.V1230V 0.11 TCGA-DG-A2KM-01 9 131018395 131018395 C G GOLGA2 3'UTR 0.09 TCGA-DG-A2KM-01 9 13136182 13136182 C G MPDZ Splice_Site p.X1431_splice 0.12 TCGA-DG-A2KM-01 9 132395004 132395004 G C NTMT1 Missense_Mutation p.D8H 0.13 tolerated(0.16) possibly_damaging(0.833) TCGA-DG-A2KM-01 9 133267319 133267319 C G HMCN2 Intron 0.10 TCGA-DG-A2KM-01 9 137967567 137967567 G C OLFM1 Missense_Mutation p.W5C 0.10 deleterious_low_confidence(0.04) benign(0.039) TCGA-DG-A2KM-01 9 17796231 17796231 T G SH3GL2 3'UTR 0.06 TCGA-DG-A2KM-01 9 27547895 27547895 G A C9orf72 3'UTR 0.09 TCGA-DG-A2KM-01 9 33366761 33366761 C T NFX1 Silent p.V1058V 0.13 TCGA-DG-A2KM-01 9 75516138 75516138 G C ALDH1A1 Missense_Mutation p.Q498E 0.15 tolerated(0.19) benign(0.005) TCGA-DG-A2KM-01 9 90301515 90301515 G A DAPK1 Silent p.V758V 0.20 TCGA-DG-A2KM-01 9 94519831 94519831 C G ROR2 Silent p.L62L 0.13 TCGA-DG-A2KM-01 9 95618529 95618529 C T ZNF484 Silent p.Q31Q 0.08 TCGA-DG-A2KM-01 X 100177950 100177950 C T XKRX Missense_Mutation p.E146K 0.12 tolerated(0.29) benign(0.031) TCGA-DG-A2KM-01 X 118223667 118223667 T A KIAA1210 Missense_Mutation p.D509V 0.09 deleterious(0.01) possibly_damaging(0.864) TCGA-DG-A2KM-01 X 119678052 119678052 G C CUL4B Missense_Mutation p.Q382E 0.12 tolerated(0.53) benign(0.005) TCGA-DG-A2KM-01 X 122561902 122561902 C T GRIA3 Missense_Mutation p.S663F 0.08 deleterious(0) probably_damaging(1) TCGA-DG-A2KM-01 X 123040939 123040939 C G XIAP Missense_Mutation p.L468V 0.08 deleterious(0.04) probably_damaging(1) TCGA-DG-A2KM-01 X 14883161 14883161 C T FANCB Missense_Mutation p.G158S 0.13 tolerated(0.51) benign(0.014) TCGA-DG-A2KM-01 X 22291649 22291649 C G ZNF645 Missense_Mutation p.P181A 0.13 deleterious(0.03) benign(0.182) TCGA-DG-A2KM-01 X 24230835 24230835 C T ZFX 3'UTR 0.11 TCGA-DG-A2KM-01 X 49958784 49958784 G A AKAP4 Missense_Mutation p.P194S 0.08 tolerated(0.19) possibly_damaging(0.543) TCGA-DG-A2KM-01 X 50052361 50052361 C G CCNB3 Missense_Mutation p.L398V 0.17 tolerated(0.26) benign(0.199) TCGA-DG-A2KM-01 X 53409277 53409277 C G SMC1A Missense_Mutation p.E1105Q 0.10 deleterious(0) probably_damaging(1) TCGA-DG-A2KM-01 X 71494216 71494216 G C RPS4X Intron 0.07 TCGA-DG-A2KM-01 X 80552876 80552876 C A SH3BGRL 3'UTR 0.07 TCGA-DR-A0ZL-01 10 108432647 108432647 T C SORCS1 Silent p.R679R 0.07 TCGA-DR-A0ZL-01 10 111881894 111881894 A G ADD3 Silent p.G329G 0.22 TCGA-DR-A0ZL-01 10 23287294 23287294 G A ARMC3 Missense_Mutation p.A465T 0.44 tolerated(0.09) benign(0.02) TCGA-DR-A0ZL-01 10 24874007 24874007 C G ARHGAP21 Missense_Mutation p.M1737I 0.20 tolerated(0.27) benign(0.037) TCGA-DR-A0ZL-01 10 27702350 27702350 G A PTCHD3 Missense_Mutation p.T277M 0.20 tolerated(0.1) possibly_damaging(0.753) TCGA-DR-A0ZL-01 10 28824542 28824542 G A WAC Missense_Mutation p.E44K 0.20 deleterious(0.04) benign(0.021) TCGA-DR-A0ZL-01 10 64944425 64944425 G A JMJD1C Missense_Mutation p.H2302Y 0.24 tolerated(0.12) benign(0.013) TCGA-DR-A0ZL-01 10 85984344 85984344 G T LRIT2 Missense_Mutation p.Q213K 0.26 deleterious(0.02) possibly_damaging(0.869) TCGA-DR-A0ZL-01 11 111571629 111571629 C G SIK2 Missense_Mutation p.F166L 0.35 deleterious(0.04) possibly_damaging(0.908) TCGA-DR-A0ZL-01 11 22849396 22849396 C A SVIP Nonsense_Mutation p.E27* 0.23 TCGA-DR-A0ZL-01 11 62439422 62439422 C G C11orf83 Intron 0.28 TCGA-DR-A0ZL-01 12 112460369 112460369 G A ERP29 Missense_Mutation p.M233I 0.29 tolerated(0.41) benign(0.002) TCGA-DR-A0ZL-01 12 130015677 130015677 G A TMEM132D Missense_Mutation p.R348C 0.07 deleterious(0) possibly_damaging(0.498) TCGA-DR-A0ZL-01 12 14577421 14577421 C G ATF7IP Missense_Mutation p.S191C 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-DR-A0ZL-01 12 29649141 29649141 G A OVCH1 Missense_Mutation p.A85V 0.35 deleterious(0) probably_damaging(0.968) TCGA-DR-A0ZL-01 12 48528576 48528576 C T PFKM Silent p.D308D 0.27 TCGA-DR-A0ZL-01 12 80660296 80660299 TCTC - OTOGL Frame_Shift_Del p.S757Pfs*63 0.16 TCGA-DR-A0ZL-01 13 101728269 101728269 G A NALCN Silent p.G1303G 0.30 TCGA-DR-A0ZL-01 13 46658397 46658397 C T CPB2 Missense_Mutation p.D78N 0.29 tolerated(0.69) benign(0.001) TCGA-DR-A0ZL-01 13 60545227 60545227 G A DIAPH3 Missense_Mutation p.S573L 0.11 tolerated(0.18) benign(0.001) TCGA-DR-A0ZL-01 13 79189884 79189884 G C RNF219 Missense_Mutation p.S671C 0.32 tolerated_low_confidence(0.24) probably_damaging(0.997) TCGA-DR-A0ZL-01 14 26917097 26917097 T A NOVA1 3'UTR 0.23 TCGA-DR-A0ZL-01 14 58827643 58827643 G A ARID4A Missense_Mutation p.E655K 0.05 deleterious(0.02) possibly_damaging(0.512) TCGA-DR-A0ZL-01 14 73566412 73566412 G C RBM25 Missense_Mutation p.R274T 0.18 probably_damaging(0.979) TCGA-DR-A0ZL-01 15 49420152 49420152 C T COPS2 Missense_Mutation p.A450T 0.10 tolerated(0.13) benign(0.012) TCGA-DR-A0ZL-01 15 52664329 52664329 C G MYO5A Missense_Mutation p.D937H 0.11 deleterious(0) possibly_damaging(0.863) TCGA-DR-A0ZL-01 15 65157935 65157935 G A PLEKHO2 Missense_Mutation p.E441K 0.40 tolerated(0.09) benign(0.043) TCGA-DR-A0ZL-01 15 93007750 93007750 G A ST8SIA2 3'UTR 0.47 TCGA-DR-A0ZL-01 16 22122307 22122307 C T VWA3A Silent p.S227S 0.12 TCGA-DR-A0ZL-01 16 4383433 4383433 A G GLIS2 Silent p.P86P 0.17 TCGA-DR-A0ZL-01 16 71605524 71605524 C G TAT Missense_Mutation p.E248D 0.22 deleterious(0) probably_damaging(0.989) TCGA-DR-A0ZL-01 17 26723045 26723045 A T SARM1 Missense_Mutation p.K648M 0.04 tolerated(0.09) benign(0.068) TCGA-DR-A0ZL-01 17 33288808 33288808 C T ZNF830 Missense_Mutation p.H75Y 0.19 deleterious(0) probably_damaging(0.959) TCGA-DR-A0ZL-01 17 34182754 34182754 C T C17orf66 Missense_Mutation p.G427S 0.09 tolerated(0.07) possibly_damaging(0.71) TCGA-DR-A0ZL-01 17 62290374 62290374 G A TEX2 Silent p.L402L 0.21 TCGA-DR-A0ZL-01 17 79870151 79870151 C G SIRT7 3'UTR 0.35 TCGA-DR-A0ZL-01 19 13910663 13910663 G A ZSWIM4 Missense_Mutation p.D95N 0.23 tolerated(0.16) benign(0.417) TCGA-DR-A0ZL-01 19 19313670 19313670 C T NR2C2AP Missense_Mutation p.R20H 0.15 deleterious(0) probably_damaging(0.992) TCGA-DR-A0ZL-01 19 23544539 23544539 A T ZNF91 Silent p.A414A 0.09 TCGA-DR-A0ZL-01 19 3964677 3964677 G A DAPK3 Silent p.D125D 0.14 TCGA-DR-A0ZL-01 19 41128416 41128416 G T LTBP4 Missense_Mutation p.G1176W 0.08 deleterious(0.01) benign(0.016) TCGA-DR-A0ZL-01 19 52084764 52084764 G A ZNF175 Missense_Mutation p.A65T 0.26 deleterious(0.02) benign(0.045) TCGA-DR-A0ZL-01 19 55331284 55331284 G C KIR3DL1 Missense_Mutation p.E158Q 0.18 deleterious(0.03) possibly_damaging(0.526) TCGA-DR-A0ZL-01 1 12856067 12856067 G T PRAMEF1 Missense_Mutation p.R449S 0.04 tolerated(0.58) benign(0.049) TCGA-DR-A0ZL-01 1 158815714 158815714 C G MNDA Missense_Mutation p.A303G 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-DR-A0ZL-01 1 176863936 176863936 C T ASTN1 Missense_Mutation p.R901Q 0.24 tolerated(0.3) possibly_damaging(0.56) TCGA-DR-A0ZL-01 1 181741311 181741311 G A CACNA1E Missense_Mutation p.G1695S 0.10 deleterious(0) probably_damaging(0.961) TCGA-DR-A0ZL-01 1 226128900 226128900 G A LEFTY2 5'UTR 0.12 TCGA-DR-A0ZL-01 1 43779034 43779034 G A TIE1 Missense_Mutation p.R719Q 0.23 tolerated(0.22) probably_damaging(0.997) TCGA-DR-A0ZL-01 1 5937208 5937208 G A NPHP4 Missense_Mutation p.S921F 0.33 deleterious(0.01) benign(0.381) TCGA-DR-A0ZL-01 21 32253432 32253432 A G KRTAP11-1 Missense_Mutation p.S138P 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-DR-A0ZL-01 22 39417539 39417539 C A APOBEC3D Silent p.I5I 0.21 TCGA-DR-A0ZL-01 2 166806100 166806100 C G TTC21B Intron 0.09 TCGA-DR-A0ZL-01 2 179404687 179404687 G A TTN Missense_Mutation p.P32702L 0.18 TCGA-DR-A0ZL-01 2 219128369 219128369 C A GPBAR1 Silent p.R308R 0.35 TCGA-DR-A0ZL-01 2 70122315 70122315 C T SNRNP27 Missense_Mutation p.R42C 0.21 deleterious(0) unknown(0) TCGA-DR-A0ZL-01 3 108110711 108110711 C T MYH15 Missense_Mutation p.E1796K 0.05 tolerated(1) benign(0.007) TCGA-DR-A0ZL-01 3 137483992 137483992 C T SOX14 Silent p.P122P 0.19 TCGA-DR-A0ZL-01 3 147128284 147128284 G A ZIC1 Missense_Mutation p.G129R 0.25 tolerated(0.37) benign(0.005) TCGA-DR-A0ZL-01 3 157823922 157823922 G A SHOX2 5'UTR 0.41 TCGA-DR-A0ZL-01 3 170244566 170244566 T C SLC7A14 Missense_Mutation p.T54A 0.12 deleterious(0.01) possibly_damaging(0.868) TCGA-DR-A0ZL-01 3 53853588 53853588 G A CHDH Missense_Mutation p.R412W 0.30 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZL-01 4 122835998 122835998 C A TRPC3 Silent p.V426V 0.32 TCGA-DR-A0ZL-01 5 140230162 140230162 G T PCDHA9 Silent p.V694V 0.21 TCGA-DR-A0ZL-01 5 140710561 140710561 G T PCDHGA1 Missense_Mutation p.V104L 0.33 tolerated_low_confidence(0.39) benign(0.106) TCGA-DR-A0ZL-01 5 15936809 15936809 C T FBXL7 Silent p.S330S 0.10 TCGA-DR-A0ZL-01 6 114179004 114179004 C T MARCKS Missense_Mutation p.P28L 0.33 deleterious(0) possibly_damaging(0.908) TCGA-DR-A0ZL-01 6 27101231 27101231 G T HIST1H2AG Silent p.A127A 0.23 TCGA-DR-A0ZL-01 6 27841106 27841106 C T HIST1H4L Silent p.V61V 0.25 TCGA-DR-A0ZL-01 6 30570171 30570171 C T PPP1R10 Missense_Mutation p.R752H 0.04 tolerated_low_confidence(0.08) unknown(0) TCGA-DR-A0ZL-01 6 31557387 31557387 T C NCR3 Missense_Mutation p.T138A 0.13 tolerated(0.13) benign(0.005) TCGA-DR-A0ZL-01 6 70610139 70610139 C G COL19A1 Missense_Mutation p.L59V 0.18 deleterious(0.02) unknown(0) TCGA-DR-A0ZL-01 7 123594484 123594484 G C SPAM1 Missense_Mutation p.R287T 0.04 deleterious(0) probably_damaging(1) TCGA-DR-A0ZL-01 7 141767223 141767223 C A MGAM Intron 0.08 TCGA-DR-A0ZL-01 7 141833802 141833802 C G RP11-1220K2.2 Silent p.P199P 0.43 TCGA-DR-A0ZL-01 7 158715181 158715181 T C WDR60 Missense_Mutation p.C679R 0.14 deleterious(0) possibly_damaging(0.831) TCGA-DR-A0ZL-01 7 56122148 56122148 C G CCT6A Silent p.V96V 0.12 TCGA-DR-A0ZL-01 7 56122192 56122192 C G CCT6A Missense_Mutation p.S111C 0.13 deleterious(0) probably_damaging(0.962) TCGA-DR-A0ZL-01 8 143614744 143614744 G A BAI1 Missense_Mutation p.A1163T 0.30 tolerated(0.44) possibly_damaging(0.798) TCGA-DR-A0ZL-01 9 103109670 103109670 G A TEX10 Missense_Mutation p.H67Y 0.18 deleterious(0) benign(0.005) TCGA-DR-A0ZL-01 9 84605720 84605720 G T SPATA31D1 Missense_Mutation p.G112V 0.23 deleterious(0) possibly_damaging(0.774) TCGA-DR-A0ZL-01 X 109696778 109696778 C T RGAG1 Missense_Mutation p.P978L 0.26 tolerated(0.07) benign(0.086) TCGA-DR-A0ZL-01 X 114082600 114082600 C T HTR2C Silent p.P128P 0.07 TCGA-DR-A0ZL-01 X 117752608 117752608 A T DOCK11 Missense_Mutation p.N1130Y 0.04 tolerated(1) possibly_damaging(0.543) TCGA-DR-A0ZL-01 X 136649493 136649493 C T ZIC3 Nonsense_Mutation p.Q215* 0.24 TCGA-DR-A0ZL-01 X 30686131 30686131 G A GK Nonsense_Mutation p.W52* 0.21 TCGA-DR-A0ZL-01 X 50378576 50378576 C A SHROOM4 Missense_Mutation p.G166V 0.14 deleterious(0.01) possibly_damaging(0.511) TCGA-DR-A0ZM-01 10 101464287 101464287 C G ENTPD7 Missense_Mutation p.F554L 0.27 tolerated(0.15) benign(0.05) TCGA-DR-A0ZM-01 10 101715662 101715662 C T DNMBP Missense_Mutation p.M523I 0.22 tolerated_low_confidence(0.39) benign(0.001) TCGA-DR-A0ZM-01 10 101716192 101716192 C T DNMBP Missense_Mutation p.E347K 0.22 tolerated_low_confidence(0.18) benign(0.007) TCGA-DR-A0ZM-01 10 101808556 101808556 C G CPN1 Missense_Mutation p.E397Q 0.23 tolerated(0.43) benign(0.001) TCGA-DR-A0ZM-01 10 102685908 102685908 G C FAM178A Intron 0.25 TCGA-DR-A0ZM-01 10 103907125 103907125 C A PPRC1 Missense_Mutation p.S1459Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-DR-A0ZM-01 10 103916809 103916809 G C NOLC1 Missense_Mutation p.D52H 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 10 104176175 104176175 G T PSD Missense_Mutation p.F207L 0.25 tolerated_low_confidence(0.69) benign(0) TCGA-DR-A0ZM-01 10 104859772 104859772 C T NT5C2 Missense_Mutation p.E182K 0.25 tolerated(0.59) benign(0.011) TCGA-DR-A0ZM-01 10 108716280 108716280 G A SORCS1 Missense_Mutation p.S206L 0.10 deleterious(0) possibly_damaging(0.905) TCGA-DR-A0ZM-01 10 112838144 112838144 C G ADRA2A Silent p.L130L 0.24 TCGA-DR-A0ZM-01 10 112839032 112839032 C T ADRA2A Silent p.F426F 0.22 TCGA-DR-A0ZM-01 10 115602210 115602210 C T DCLRE1A Missense_Mutation p.E853K 0.21 deleterious(0) probably_damaging(0.968) TCGA-DR-A0ZM-01 10 116048875 116048875 C T VWA2 Silent p.F583F 0.18 TCGA-DR-A0ZM-01 10 117228797 117228797 C G ATRNL1 Missense_Mutation p.F1204L 0.31 deleterious(0) probably_damaging(0.986) TCGA-DR-A0ZM-01 10 118236174 118236174 G C PNLIPRP3 Missense_Mutation p.E395Q 0.20 tolerated(0.36) benign(0.004) TCGA-DR-A0ZM-01 10 119805360 119805360 G C RAB11FIP2 Silent p.L105L 0.20 TCGA-DR-A0ZM-01 10 121569692 121569692 C G INPP5F Silent p.L550L 0.18 TCGA-DR-A0ZM-01 10 124348773 124348773 C T DMBT1 Silent p.V699V 0.25 TCGA-DR-A0ZM-01 10 126384767 126384767 C G FAM53B Missense_Mutation p.K31N 0.23 tolerated(0.1) benign(0.394) TCGA-DR-A0ZM-01 10 127542656 127542656 G C DHX32 Silent p.L322L 0.15 TCGA-DR-A0ZM-01 10 127693572 127693572 G A FANK1 Missense_Mutation p.G220E 0.28 deleterious(0) probably_damaging(0.975) TCGA-DR-A0ZM-01 10 128936045 128936045 G C FAM196A 3'UTR 0.22 TCGA-DR-A0ZM-01 10 135112976 135112976 C T TUBGCP2 Silent p.L137L 0.16 TCGA-DR-A0ZM-01 10 15255395 15255395 C T FAM171A1 Missense_Mutation p.G731E 0.13 tolerated(0.2) probably_damaging(1) TCGA-DR-A0ZM-01 10 17636383 17636383 C T PTPLA Splice_Site p.X202_splice 0.21 TCGA-DR-A0ZM-01 10 18292097 18292097 C T SLC39A12 Intron 0.29 TCGA-DR-A0ZM-01 10 18292319 18292319 C G SLC39A12 Intron 0.04 TCGA-DR-A0ZM-01 10 22021945 22021945 C T MLLT10 Missense_Mutation p.S779L 0.29 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 10 22048443 22048443 C G DNAJC1 Missense_Mutation p.E418Q 0.22 tolerated(0.25) benign(0.007) TCGA-DR-A0ZM-01 10 22618232 22618232 G A BMI1 Missense_Mutation p.E248K 0.15 tolerated(0.4) benign(0.007) TCGA-DR-A0ZM-01 10 25313422 25313422 C G THNSL1 Missense_Mutation p.Q424E 0.26 tolerated(0.21) probably_damaging(0.996) TCGA-DR-A0ZM-01 10 27301817 27301817 C G ANKRD26 Missense_Mutation p.L1649F 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-DR-A0ZM-01 10 27454084 27454084 C T MASTL Silent p.I215I 0.28 TCGA-DR-A0ZM-01 10 28283895 28283895 C T ARMC4 Nonsense_Mutation p.W59* 0.16 TCGA-DR-A0ZM-01 10 29578116 29578116 G A LYZL1 Missense_Mutation p.E24K 0.15 deleterious_low_confidence(0.04) benign(0.065) TCGA-DR-A0ZM-01 10 30748220 30748220 G C MAP3K8 Missense_Mutation p.D355H 0.21 deleterious(0) possibly_damaging(0.476) TCGA-DR-A0ZM-01 10 3199698 3199698 C T PITRM1 Missense_Mutation p.E426K 0.12 tolerated(0.06) possibly_damaging(0.461) TCGA-DR-A0ZM-01 10 33137547 33137547 G C C10ORF68 Missense_Mutation p.D509H 0.21 deleterious(0.01) probably_damaging(0.966) TCGA-DR-A0ZM-01 10 45924146 45924146 C T ALOX5 Silent p.F305F 0.30 TCGA-DR-A0ZM-01 10 46959976 46959976 G C SYT15 3'Flank 0.06 TCGA-DR-A0ZM-01 10 48390628 48390628 C T RBP3 Missense_Mutation p.D84N 0.24 deleterious(0) probably_damaging(0.994) TCGA-DR-A0ZM-01 10 50952795 50952795 C T OGDHL Missense_Mutation p.E545K 0.17 tolerated(0.22) benign(0.117) TCGA-DR-A0ZM-01 10 55698580 55698580 G C PCDH15 Nonsense_Mutation p.S1123* 0.16 TCGA-DR-A0ZM-01 10 55955586 55955586 C T PCDH15 Missense_Mutation p.E388K 0.17 tolerated(0.2) benign(0.086) TCGA-DR-A0ZM-01 10 6002384 6002384 G C IL15RA Missense_Mutation p.Q177E 0.16 deleterious(0.01) benign(0.069) TCGA-DR-A0ZM-01 10 6154309 6154309 G A RBM17 Missense_Mutation p.D281N 0.14 tolerated(0.22) benign(0.044) TCGA-DR-A0ZM-01 10 70532748 70532748 G C CCAR1 Missense_Mutation p.E848Q 0.29 tolerated(0.1) unknown(0) TCGA-DR-A0ZM-01 10 74034053 74034053 G C DDIT4 Missense_Mutation p.D27H 0.19 tolerated(0.07) benign(0.053) TCGA-DR-A0ZM-01 10 75276292 75276292 C G USP54 Missense_Mutation p.E1298Q 0.05 tolerated_low_confidence(0.1) possibly_damaging(0.791) TCGA-DR-A0ZM-01 10 75553453 75553453 C T ZSWIM8 Silent p.L807L 0.30 TCGA-DR-A0ZM-01 10 75568002 75568002 G A NDST2 Missense_Mutation p.P49S 0.13 tolerated_low_confidence(0.3) probably_damaging(0.999) TCGA-DR-A0ZM-01 10 76788623 76788623 C T KAT6B Silent p.L1347L 0.25 TCGA-DR-A0ZM-01 10 87484191 87484191 C G GRID1 Missense_Mutation p.Q592H 0.24 tolerated(0.43) benign(0.022) TCGA-DR-A0ZM-01 10 88994238 88994238 G A NUTM2A Missense_Mutation p.E804K 0.19 tolerated(0.19) benign(0) TCGA-DR-A0ZM-01 10 90427329 90427329 C T LIPF Nonsense_Mutation p.Q47* 0.24 TCGA-DR-A0ZM-01 10 90611348 90611348 G C ANKRD22 Missense_Mutation p.S6C 0.21 deleterious(0) possibly_damaging(0.572) TCGA-DR-A0ZM-01 10 93749226 93749226 C G BTAF1 Missense_Mutation p.P915A 0.26 deleterious(0) possibly_damaging(0.843) TCGA-DR-A0ZM-01 10 94700547 94700547 G A EXOC6 Missense_Mutation p.E426K 0.15 deleterious(0) possibly_damaging(0.493) TCGA-DR-A0ZM-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.33 TCGA-DR-A0ZM-01 10 96702004 96702004 G A CYP2C9 Missense_Mutation p.M129I 0.16 deleterious(0.04) benign(0.06) TCGA-DR-A0ZM-01 10 97174291 97174291 C G SORBS1 Missense_Mutation p.R257T 0.27 deleterious_low_confidence(0.03) benign(0.15) TCGA-DR-A0ZM-01 10 97607200 97607200 C T ENTPD1 Intron 0.16 TCGA-DR-A0ZM-01 10 98405365 98405365 C A PIK3AP1 Nonsense_Mutation p.E414* 0.22 TCGA-DR-A0ZM-01 10 99160214 99160214 C T RRP12 Missense_Mutation p.E73K 0.21 tolerated(0.34) benign(0.003) TCGA-DR-A0ZM-01 11 102391444 102391444 C G MMP7 3'UTR 0.26 TCGA-DR-A0ZM-01 11 1028329 1028329 G A MUC6 Silent p.I550I 0.25 TCGA-DR-A0ZM-01 11 1028943 1028943 G A MUC6 Nonsense_Mutation p.Q467* 0.21 TCGA-DR-A0ZM-01 11 10653569 10653569 C G MRVI1 Missense_Mutation p.L123F 0.25 tolerated(0.15) possibly_damaging(0.802) TCGA-DR-A0ZM-01 11 10795563 10795563 C G CTR9 Missense_Mutation p.S911C 0.17 deleterious(0.03) benign(0.129) TCGA-DR-A0ZM-01 11 111591721 111591721 G A SIK2 Missense_Mutation p.E627K 0.21 tolerated(0.35) benign(0.021) TCGA-DR-A0ZM-01 11 111889740 111889740 G A DIXDC1 Missense_Mutation p.E677K 0.05 deleterious(0) possibly_damaging(0.482) TCGA-DR-A0ZM-01 11 113230727 113230727 G A TTC12 Silent p.L537L 0.28 TCGA-DR-A0ZM-01 11 113669846 113669846 G C USP28 3'UTR 0.35 TCGA-DR-A0ZM-01 11 114320605 114320605 C T REXO2 Nonsense_Mutation p.Q208* 0.24 TCGA-DR-A0ZM-01 11 116692248 116692248 G A APOA4 Nonsense_Mutation p.Q176* 0.26 TCGA-DR-A0ZM-01 11 117303882 117303882 G C DSCAML1 Missense_Mutation p.I1726M 0.24 deleterious(0) probably_damaging(0.994) TCGA-DR-A0ZM-01 11 118772426 118772426 C T BCL9L Missense_Mutation p.E676K 0.20 probably_damaging(0.99) TCGA-DR-A0ZM-01 11 118940948 118940948 C T VPS11 Silent p.F158F 0.24 TCGA-DR-A0ZM-01 11 119053983 119053983 C A NLRX1 Silent p.L921L 0.13 TCGA-DR-A0ZM-01 11 119059398 119059398 C T PDZD3 Missense_Mutation p.S370L 0.28 deleterious(0.02) benign(0.084) TCGA-DR-A0ZM-01 11 119207071 119207071 C T RNF26 Silent p.V413V 0.28 TCGA-DR-A0ZM-01 11 120776193 120776193 G C GRIK4 Silent p.L489L 0.20 TCGA-DR-A0ZM-01 11 120989131 120989131 G A TECTA Missense_Mutation p.E303K 0.25 tolerated(0.08) benign(0.217) TCGA-DR-A0ZM-01 11 1213058 1213058 C G MUC5AC RNA 0.18 TCGA-DR-A0ZM-01 11 123676287 123676287 C T OR6M1 Silent p.V257V 0.23 TCGA-DR-A0ZM-01 11 123813598 123813598 C T OR6T1 Silent p.L316L 0.17 TCGA-DR-A0ZM-01 11 124621373 124621373 G C VSIG2 Missense_Mutation p.F55L 0.25 tolerated(0.5) probably_damaging(0.999) TCGA-DR-A0ZM-01 11 124761385 124761385 G C ROBO4 Missense_Mutation p.I586M 0.13 tolerated(0.12) benign(0.404) TCGA-DR-A0ZM-01 11 124845006 124845006 G A CCDC15 Missense_Mutation p.M177I 0.15 deleterious(0.01) possibly_damaging(0.625) TCGA-DR-A0ZM-01 11 125325883 125325883 C G FEZ1 Missense_Mutation p.E263Q 0.22 deleterious(0) probably_damaging(0.977) TCGA-DR-A0ZM-01 11 1269780 1269780 G C MUC5B Missense_Mutation p.W3890C 0.16 unknown(0) TCGA-DR-A0ZM-01 11 129979462 129979462 G C APLP2 Missense_Mutation p.E82Q 0.24 tolerated(0.06) benign(0.33) TCGA-DR-A0ZM-01 11 133711958 133711958 C G SPATA19 Missense_Mutation p.M160I 0.25 tolerated_low_confidence(0.4) benign(0) TCGA-DR-A0ZM-01 11 134027950 134027950 C A NCAPD3 Silent p.L1349L 0.16 TCGA-DR-A0ZM-01 11 134047138 134047138 G A NCAPD3 Silent p.L999L 0.24 TCGA-DR-A0ZM-01 11 13410601 13410601 C T BTBD10 Missense_Mutation p.R402Q 0.29 tolerated(0.27) benign(0.08) TCGA-DR-A0ZM-01 11 14632607 14632607 C G PSMA1 5'UTR 0.22 TCGA-DR-A0ZM-01 11 14891237 14891237 G A PDE3B 3'UTR 0.30 TCGA-DR-A0ZM-01 11 17429944 17429944 C G ABCC8 Missense_Mutation p.E939Q 0.20 deleterious(0.05) benign(0.064) TCGA-DR-A0ZM-01 11 17793718 17793718 C T KCNC1 Silent p.F359F 0.26 TCGA-DR-A0ZM-01 11 18266810 18266810 G C SAA2 3'UTR 0.14 TCGA-DR-A0ZM-01 11 18636241 18636241 G A SPTY2D1 Missense_Mutation p.S527L 0.15 tolerated(0.2) possibly_damaging(0.791) TCGA-DR-A0ZM-01 11 20676574 20676574 C G SLC6A5 3'UTR 0.26 TCGA-DR-A0ZM-01 11 2356640 2356640 C G CD81-AS1 Intron 0.27 TCGA-DR-A0ZM-01 11 31312394 31312394 G A DCDC1 Silent p.L254L 0.06 TCGA-DR-A0ZM-01 11 34472557 34472557 C T CAT Silent p.V87V 0.22 TCGA-DR-A0ZM-01 11 36472765 36472765 C T PRR5L Missense_Mutation p.H198Y 0.23 deleterious(0) probably_damaging(0.968) TCGA-DR-A0ZM-01 11 406528 406528 G A SIGIRR Missense_Mutation p.S297F 0.24 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 11 408113 408113 G C SIGIRR Missense_Mutation p.I100M 0.22 deleterious(0.04) benign(0.066) TCGA-DR-A0ZM-01 11 4411252 4411252 C G TRIM21 Missense_Mutation p.E130Q 0.21 deleterious(0) possibly_damaging(0.848) TCGA-DR-A0ZM-01 11 44950832 44950832 G T TSPAN18 3'UTR 0.33 TCGA-DR-A0ZM-01 11 4661948 4661948 G C OR51D1 Missense_Mutation p.E310Q 0.27 tolerated(1) benign(0.014) TCGA-DR-A0ZM-01 11 488567 488567 C G PTDSS2 Missense_Mutation p.I258M 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-DR-A0ZM-01 11 5013305 5013305 G C MMP26 Missense_Mutation p.R236T 0.21 tolerated(0.43) benign(0.01) TCGA-DR-A0ZM-01 11 5255687 5255687 G T HBD 5'UTR 0.31 TCGA-DR-A0ZM-01 11 5510628 5510628 T A OR52D1 Missense_Mutation p.L231H 0.25 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 11 55111137 55111137 C G OR4A16 Missense_Mutation p.S154C 0.24 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-DR-A0ZM-01 11 56020545 56020545 G C OR5T3 Missense_Mutation p.M290I 0.18 tolerated(0.21) benign(0.038) TCGA-DR-A0ZM-01 11 57296203 57296203 G C TIMM10 Missense_Mutation p.S87C 0.28 deleterious(0.03) benign(0.156) TCGA-DR-A0ZM-01 11 57472622 57472622 C T MED19 Silent p.K99K 0.26 TCGA-DR-A0ZM-01 11 5809764 5809764 C T OR52N1 Missense_Mutation p.D95N 0.18 tolerated(0.45) benign(0.003) TCGA-DR-A0ZM-01 11 58378523 58378523 G C ZFP91 Missense_Mutation p.E240Q 0.23 deleterious(0.04) benign(0.038) TCGA-DR-A0ZM-01 11 606580 606580 C G PHRF1 Silent p.L530L 0.21 TCGA-DR-A0ZM-01 11 60702840 60702840 G C TMEM132A Missense_Mutation p.L652F 0.17 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 11 607352 607352 C T PHRF1 Silent p.F631F 0.20 TCGA-DR-A0ZM-01 11 608208 608208 G C PHRF1 Missense_Mutation p.E917Q 0.10 tolerated(0.08) probably_damaging(0.972) TCGA-DR-A0ZM-01 11 62414405 62414405 G C INTS5 3'UTR 0.31 TCGA-DR-A0ZM-01 11 62621156 62621156 C T SLC3A2 5'Flank 0.24 TCGA-DR-A0ZM-01 11 63138626 63138626 C T SLC22A9 Missense_Mutation p.S141F 0.20 tolerated(0.17) benign(0.16) TCGA-DR-A0ZM-01 11 63486746 63486746 G A RTN3 Missense_Mutation p.D258N 0.26 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 11 63990556 63990556 C T FERMT3 Silent p.I573I 0.28 TCGA-DR-A0ZM-01 11 64609203 64609203 G A CDC42BPG Silent p.V85V 0.32 TCGA-DR-A0ZM-01 11 64864556 64864556 G C VPS51 Missense_Mutation p.Q105H 0.26 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 11 65417036 65417036 C G SIPA1 Missense_Mutation p.L844V 0.26 tolerated(0.15) benign(0.05) TCGA-DR-A0ZM-01 11 66407099 66407099 G A RBM4 5'UTR 0.10 TCGA-DR-A0ZM-01 11 66467041 66467041 G C SPTBN2 Silent p.L1204L 0.19 TCGA-DR-A0ZM-01 11 6652990 6652990 G C DCHS1 Missense_Mutation p.Q1178E 0.30 tolerated(0.12) probably_damaging(0.994) TCGA-DR-A0ZM-01 11 67044812 67044812 G A ADRBK1 Silent p.Q61Q 0.26 TCGA-DR-A0ZM-01 11 67208821 67208821 G A CORO1B Missense_Mutation p.R207W 0.26 deleterious(0) possibly_damaging(0.789) TCGA-DR-A0ZM-01 11 67353985 67353985 C G GSTP1 Silent p.L190L 0.23 TCGA-DR-A0ZM-01 11 68125245 68125245 G T LRP5 Nonsense_Mutation p.E206* 0.18 TCGA-DR-A0ZM-01 11 68512461 68512461 G C MTL5 Nonsense_Mutation p.S250* 0.11 TCGA-DR-A0ZM-01 11 68831410 68831410 G A TPCN2 Missense_Mutation p.G234E 0.09 deleterious(0) probably_damaging(0.915) TCGA-DR-A0ZM-01 11 70171603 70171603 C G PPFIA1 Intron 0.17 TCGA-DR-A0ZM-01 11 70333107 70333107 C T SHANK2 Silent p.R1098R 0.20 TCGA-DR-A0ZM-01 11 71814247 71814247 C G LAMTOR1 Missense_Mutation p.E8D 0.17 tolerated(0.53) benign(0) TCGA-DR-A0ZM-01 11 71903284 71903284 C T FOLR1 Nonsense_Mutation p.Q23* 0.23 TCGA-DR-A0ZM-01 11 71903325 71903325 C G FOLR1 Silent p.V36V 0.26 TCGA-DR-A0ZM-01 11 72408143 72408143 G C ARAP1 Silent p.L1017L 0.14 TCGA-DR-A0ZM-01 11 72408153 72408153 G C ARAP1 Missense_Mutation p.S1014C 0.15 tolerated(0.05) benign(0.199) TCGA-DR-A0ZM-01 11 72533173 72533173 G A ATG16L2 Silent p.Q159Q 0.50 TCGA-DR-A0ZM-01 11 73785637 73785637 G C C2CD3 Missense_Mutation p.P1538A 0.23 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 11 75591018 75591018 G - UVRAG Frame_Shift_Del p.N123Tfs*6 0.17 TCGA-DR-A0ZM-01 11 76063578 76063578 C G PRKRIR Missense_Mutation p.E206Q 0.24 deleterious(0.01) benign(0.422) TCGA-DR-A0ZM-01 11 7723819 7723819 G C OVCH2 Missense_Mutation p.D116E 0.25 tolerated(1) benign(0.001) TCGA-DR-A0ZM-01 11 8119290 8119290 G C TUB Missense_Mutation p.K360N 0.22 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 11 8494730 8494730 C G STK33 Missense_Mutation p.E107Q 0.19 tolerated(0.08) benign(0.017) TCGA-DR-A0ZM-01 11 8496558 8496558 G C STK33 5'UTR 0.17 TCGA-DR-A0ZM-01 11 85375024 85375024 G C CREBZF Missense_Mutation p.S299W 0.24 deleterious(0) probably_damaging(0.986) TCGA-DR-A0ZM-01 12 101880256 101880256 G A SPIC Missense_Mutation p.E152K 0.13 deleterious(0.04) possibly_damaging(0.713) TCGA-DR-A0ZM-01 12 102158356 102158356 C A GNPTAB Missense_Mutation p.G780V 0.23 tolerated_low_confidence(0.26) benign(0.008) TCGA-DR-A0ZM-01 12 102591037 102591037 C G PARPBP 3'Flank 0.19 TCGA-DR-A0ZM-01 12 104131462 104131462 C T STAB2 Silent p.L1867L 0.20 TCGA-DR-A0ZM-01 12 105601801 105601801 T G APPL2 Missense_Mutation p.D147A 0.25 deleterious(0) possibly_damaging(0.455) TCGA-DR-A0ZM-01 12 106460917 106460917 G A NUAK1 Missense_Mutation p.S550F 0.27 deleterious(0.02) possibly_damaging(0.723) TCGA-DR-A0ZM-01 12 106853091 106853091 C T POLR3B Missense_Mutation p.P839S 0.23 tolerated(0.48) benign(0.021) TCGA-DR-A0ZM-01 12 107391157 107391157 C G CRY1 Silent p.L500L 0.22 TCGA-DR-A0ZM-01 12 10955212 10955212 G C TAS2R7 5'UTR 0.21 TCGA-DR-A0ZM-01 12 110006640 110006640 C G MMAB Missense_Mutation p.R75S 0.21 deleterious(0) probably_damaging(0.967) TCGA-DR-A0ZM-01 12 110221551 110221551 C T TRPV4 Missense_Mutation p.E831K 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-DR-A0ZM-01 12 110222220 110222220 G A TRPV4 Missense_Mutation p.H787Y 0.25 deleterious(0.04) possibly_damaging(0.709) TCGA-DR-A0ZM-01 12 110488822 110488822 C A C12orf76 Intron 0.26 TCGA-DR-A0ZM-01 12 11174553 11174553 G C TAS2R19 Silent p.L206L 0.03 TCGA-DR-A0ZM-01 12 112119640 112119640 C G BRAP Splice_Site p.X82_splice 0.16 TCGA-DR-A0ZM-01 12 113714774 113714774 C T TPCN1 Silent p.F403F 0.24 TCGA-DR-A0ZM-01 12 116398963 116398963 G C MED13L 3'UTR 0.22 TCGA-DR-A0ZM-01 12 120574368 120574368 C G GCN1L1 Missense_Mutation p.D2316H 0.09 probably_damaging(0.999) TCGA-DR-A0ZM-01 12 120575381 120575381 C A GCN1L1 Nonsense_Mutation p.E2211* 0.06 TCGA-DR-A0ZM-01 12 120800870 120800870 C T MSI1 Silent p.K126K 0.20 TCGA-DR-A0ZM-01 12 120899800 120899800 G C SRSF9 3'UTR 0.06 TCGA-DR-A0ZM-01 12 121454196 121454196 C G C12orf43 Missense_Mutation p.E28Q 0.27 deleterious(0.01) possibly_damaging(0.584) TCGA-DR-A0ZM-01 12 123058851 123058851 C G KNTC1 Nonsense_Mutation p.S769* 0.12 TCGA-DR-A0ZM-01 12 124158229 124158229 C G TCTN2 Missense_Mutation p.S112C 0.25 tolerated(0.99) benign(0.002) TCGA-DR-A0ZM-01 12 124158264 124158264 C T TCTN2 Silent p.L124L 0.21 TCGA-DR-A0ZM-01 12 125397049 125397049 C G UBC Missense_Mutation p.L423F 0.15 deleterious(0) possibly_damaging(0.756) TCGA-DR-A0ZM-01 12 13068854 13068854 C T GPRC5A 3'UTR 0.25 TCGA-DR-A0ZM-01 12 132448185 132448185 C T EP400 Intron 0.13 TCGA-DR-A0ZM-01 12 1372230 1372230 G C ERC1 Missense_Mutation p.E840Q 0.23 deleterious(0.03) probably_damaging(0.989) TCGA-DR-A0ZM-01 12 1372286 1372286 G A ERC1 Missense_Mutation p.M858I 0.15 tolerated(0.11) benign(0.232) TCGA-DR-A0ZM-01 12 13768193 13768193 C T GRIN2B Missense_Mutation p.M503I 0.19 deleterious(0.02) benign(0.014) TCGA-DR-A0ZM-01 12 20854329 20854329 G C SLCO1C1 Missense_Mutation p.Q69H 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-DR-A0ZM-01 12 21790116 21790116 G A LDHB Silent p.V242V 0.23 TCGA-DR-A0ZM-01 12 2613650 2613650 C A CACNA1C Intron 0.21 TCGA-DR-A0ZM-01 12 2690928 2690928 G C CACNA1C Missense_Mutation p.D690H 0.20 deleterious(0) probably_damaging(0.987) TCGA-DR-A0ZM-01 12 2719826 2719826 C T CACNA1C Silent p.F1246F 0.22 TCGA-DR-A0ZM-01 12 2908402 2908402 C G FKBP4 Silent p.L221L 0.22 TCGA-DR-A0ZM-01 12 31244671 31244671 C T DDX11 Nonsense_Mutation p.Q370* 0.28 TCGA-DR-A0ZM-01 12 32890800 32890800 C T DNM1L Missense_Mutation p.S533F 0.20 deleterious(0.04) benign(0.003) TCGA-DR-A0ZM-01 12 39760894 39760894 G A KIF21A Missense_Mutation p.R225C 0.22 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 12 40040240 40040240 C G C12orf40 Silent p.L104L 0.14 TCGA-DR-A0ZM-01 12 42554402 42554402 C T YAF2 Missense_Mutation p.E202K 0.27 deleterious(0) probably_damaging(0.984) TCGA-DR-A0ZM-01 12 42554468 42554468 C G YAF2 Missense_Mutation p.D180H 0.31 deleterious(0.01) possibly_damaging(0.839) TCGA-DR-A0ZM-01 12 463316 463316 G C KDM5A Missense_Mutation p.H319D 0.16 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 12 464397 464397 C T KDM5A Missense_Mutation p.R266Q 0.16 tolerated(0.54) benign(0.001) TCGA-DR-A0ZM-01 12 46754939 46754939 C G SLC38A2 Missense_Mutation p.L492F 0.20 tolerated(0.78) possibly_damaging(0.737) TCGA-DR-A0ZM-01 12 49412512 49412512 C T PRKAG1 Intron 0.22 TCGA-DR-A0ZM-01 12 49425638 49425638 G A KMT2D Nonsense_Mutation p.Q4284* 0.17 TCGA-DR-A0ZM-01 12 5020587 5020587 G C KCNA1 Missense_Mutation p.A15P 0.27 tolerated_low_confidence(0.34) benign(0.227) TCGA-DR-A0ZM-01 12 5020588 5020588 C T KCNA1 Missense_Mutation p.A15V 0.26 tolerated_low_confidence(0.46) benign(0.001) TCGA-DR-A0ZM-01 12 51394105 51394105 G C SLC11A2 Missense_Mutation p.S205C 0.27 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 12 51891069 51891069 C G SLC4A8 Intron 0.50 TCGA-DR-A0ZM-01 12 52702236 52702236 C G KRT86 Missense_Mutation p.S443C 0.15 deleterious(0) possibly_damaging(0.7) TCGA-DR-A0ZM-01 12 52940165 52940165 C T KRT71 Silent p.R410R 0.22 TCGA-DR-A0ZM-01 12 53072003 53072003 C G KRT1 Missense_Mutation p.E271Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 12 54925340 54925340 G C NCKAP1L Missense_Mutation p.L890F 0.23 tolerated(0.12) benign(0.04) TCGA-DR-A0ZM-01 12 550094 550094 G C CCDC77 Missense_Mutation p.E418Q 0.18 deleterious(0.01) possibly_damaging(0.49) TCGA-DR-A0ZM-01 12 55795184 55795184 G A OR6C65 Missense_Mutation p.R291K 0.24 deleterious_low_confidence(0.02) benign(0.144) TCGA-DR-A0ZM-01 12 56080064 56080064 G C ITGA7 Intron 0.21 TCGA-DR-A0ZM-01 12 56815235 56815235 G C TIMELESS Nonsense_Mutation p.S923* 0.15 TCGA-DR-A0ZM-01 12 56822125 56822125 C G TIMELESS Missense_Mutation p.E491D 0.17 deleterious(0.01) possibly_damaging(0.87) TCGA-DR-A0ZM-01 12 56822160 56822160 C G TIMELESS Missense_Mutation p.E480Q 0.20 deleterious(0) probably_damaging(0.99) TCGA-DR-A0ZM-01 12 56994157 56994157 G A BAZ2A Nonsense_Mutation p.Q1576* 0.22 TCGA-DR-A0ZM-01 12 56995142 56995142 G C BAZ2A Missense_Mutation p.F1374L 0.28 tolerated(1) benign(0.001) TCGA-DR-A0ZM-01 12 56995491 56995491 C A BAZ2A Nonsense_Mutation p.E1306* 0.18 TCGA-DR-A0ZM-01 12 57107411 57107411 C T NACA Silent p.R807R 0.22 TCGA-DR-A0ZM-01 12 57397132 57397132 C G ZBTB39 Missense_Mutation p.E524Q 0.20 tolerated(0.1) probably_damaging(0.997) TCGA-DR-A0ZM-01 12 58112097 58112097 G A OS9 Missense_Mutation p.E435K 0.19 tolerated(0.11) possibly_damaging(0.463) TCGA-DR-A0ZM-01 12 58121321 58121321 C G AGAP2 Missense_Mutation p.E968Q 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-DR-A0ZM-01 12 62929322 62929322 C G MON2 Missense_Mutation p.T578S 0.06 deleterious(0.01) possibly_damaging(0.891) TCGA-DR-A0ZM-01 12 62996860 62996860 C T C12orf61 Missense_Mutation p.E87K 0.43 tolerated_low_confidence(0.37) possibly_damaging(0.486) TCGA-DR-A0ZM-01 12 65082182 65082182 G A RASSF3 Missense_Mutation p.E136K 0.28 deleterious(0.02) benign(0.011) TCGA-DR-A0ZM-01 12 65456282 65456282 C G WIF1 Missense_Mutation p.E269Q 0.25 tolerated(0.38) benign(0.007) TCGA-DR-A0ZM-01 12 6639978 6639978 C G NCAPD2 Missense_Mutation p.S1320C 0.22 deleterious(0.05) benign(0.246) TCGA-DR-A0ZM-01 12 6646823 6646823 G T GAPDH Missense_Mutation p.R200L 0.27 tolerated_low_confidence(0.06) benign(0.18) TCGA-DR-A0ZM-01 12 66773175 66773175 C T GRIP1 Missense_Mutation p.D784N 0.23 deleterious(0.01) benign(0.085) TCGA-DR-A0ZM-01 12 6696598 6696598 C G CHD4 Missense_Mutation p.L1277F 0.03 deleterious(0.04) benign(0) TCGA-DR-A0ZM-01 12 6782423 6782423 C T ZNF384 Silent p.E290E 0.16 TCGA-DR-A0ZM-01 12 69145963 69145963 C T SLC35E3 Missense_Mutation p.S222F 0.19 tolerated(0.33) benign(0.039) TCGA-DR-A0ZM-01 12 6954849 6954849 G A GNB3 Missense_Mutation p.E267K 0.24 deleterious(0.05) benign(0.041) TCGA-DR-A0ZM-01 12 6955105 6955105 G A CDCA3 3'Flank 0.24 TCGA-DR-A0ZM-01 12 69987309 69987309 C T CCT2 Missense_Mutation p.P300S 0.17 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 12 70049412 70049412 C T BEST3 Missense_Mutation p.D428N 0.05 tolerated(0.13) benign(0.01) TCGA-DR-A0ZM-01 12 70049462 70049462 C G BEST3 Missense_Mutation p.R411T 0.04 tolerated(0.18) benign(0.038) TCGA-DR-A0ZM-01 12 7051052 7051052 C G ATN1 3'UTR 0.23 TCGA-DR-A0ZM-01 12 71148118 71148118 G C PTPRR Intron 0.24 TCGA-DR-A0ZM-01 12 71537942 71537942 C T TSPAN8 Missense_Mutation p.D38N 0.17 tolerated(0.08) benign(0.178) TCGA-DR-A0ZM-01 12 72056802 72056802 G C ZFC3H1 Missense_Mutation p.R197G 0.21 deleterious(0.03) benign(0.25) TCGA-DR-A0ZM-01 12 7633798 7633798 G A CD163 Missense_Mutation p.S1101F 0.21 tolerated(0.27) probably_damaging(0.979) TCGA-DR-A0ZM-01 12 7818477 7818477 G C APOBEC1 5'UTR 0.24 TCGA-DR-A0ZM-01 12 80192284 80192284 C G PPP1R12A Missense_Mutation p.R694T 0.31 deleterious(0) probably_damaging(0.992) TCGA-DR-A0ZM-01 12 8085688 8085688 G C SLC2A3 Missense_Mutation p.S55C 0.13 deleterious(0) possibly_damaging(0.89) TCGA-DR-A0ZM-01 12 8088722 8088722 C T SLC2A3 5'UTR 0.12 TCGA-DR-A0ZM-01 12 8906507 8906507 G C RIMKLB Missense_Mutation p.R172P 0.21 tolerated(0.32) possibly_damaging(0.908) TCGA-DR-A0ZM-01 12 90010755 90010755 C T ATP2B1 Missense_Mutation p.D631N 0.04 tolerated(0.21) possibly_damaging(0.574) TCGA-DR-A0ZM-01 12 9095088 9095088 C T M6PR Missense_Mutation p.R212Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 12 91539883 91539883 G A DCN Silent p.F344F 0.18 TCGA-DR-A0ZM-01 12 93968612 93968612 C G SOCS2 Missense_Mutation p.S85C 0.12 deleterious(0) probably_damaging(0.97) TCGA-DR-A0ZM-01 12 94543449 94543449 C A PLXNC1 Missense_Mutation p.F234L 0.25 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 12 95535261 95535261 C G FGD6 Missense_Mutation p.E914Q 0.17 deleterious(0.01) possibly_damaging(0.897) TCGA-DR-A0ZM-01 12 96354389 96354389 G A AMDHD1 Missense_Mutation p.M267I 0.26 tolerated(0.38) benign(0.01) TCGA-DR-A0ZM-01 12 97150283 97150283 C T C12orf55 Nonsense_Mutation p.Q2630* 0.18 TCGA-DR-A0ZM-01 13 111927125 111927125 C T ARHGEF7 Silent p.F441F 0.32 TCGA-DR-A0ZM-01 13 113514622 113514622 C G ATP11A Missense_Mutation p.L917V 0.19 deleterious(0) possibly_damaging(0.893) TCGA-DR-A0ZM-01 13 113742677 113742677 G A MCF2L Missense_Mutation p.E909K 0.15 deleterious(0) possibly_damaging(0.813) TCGA-DR-A0ZM-01 13 25378559 25378559 C G RNF17 Missense_Mutation p.L695V 0.13 tolerated(0.06) possibly_damaging(0.744) TCGA-DR-A0ZM-01 13 25417973 25417973 C G RNF17 Missense_Mutation p.P899A 0.19 tolerated(0.1) benign(0) TCGA-DR-A0ZM-01 13 25671651 25671651 C T PABPC3 Missense_Mutation p.H439Y 0.26 tolerated(1) benign(0.004) TCGA-DR-A0ZM-01 13 26959424 26959424 C T CDK8 Silent p.F197F 0.11 TCGA-DR-A0ZM-01 13 28143343 28143343 C G LNX2 Missense_Mutation p.E160Q 0.04 tolerated(0.37) benign(0.397) TCGA-DR-A0ZM-01 13 29286975 29286975 G C SLC46A3 Nonsense_Mutation p.S301* 0.26 TCGA-DR-A0ZM-01 13 31858829 31858829 G A B3GALTL Missense_Mutation p.E299K 0.15 deleterious(0.02) probably_damaging(0.983) TCGA-DR-A0ZM-01 13 32371488 32371488 C G RXFP2 Missense_Mutation p.S646C 0.16 deleterious(0) probably_damaging(0.95) TCGA-DR-A0ZM-01 13 37006714 37006714 C T CCNA1 5'UTR 0.18 TCGA-DR-A0ZM-01 13 37598223 37598223 G C SUPT20H Missense_Mutation p.Q514E 0.19 tolerated(0.06) benign(0.113) TCGA-DR-A0ZM-01 13 38164624 38164624 C T POSTN Missense_Mutation p.G109E 0.11 tolerated(0.07) probably_damaging(1) TCGA-DR-A0ZM-01 13 41486624 41486624 C G SUGT1P3 RNA 0.18 TCGA-DR-A0ZM-01 13 42876457 42876457 C G AKAP11 Nonsense_Mutation p.S1192* 0.04 TCGA-DR-A0ZM-01 13 45008644 45008644 C A TSC22D1 3'UTR 0.27 TCGA-DR-A0ZM-01 13 46594685 46594685 G A ZC3H13 Missense_Mutation p.S116F 0.22 unknown(0) TCGA-DR-A0ZM-01 13 46935611 46935611 G A KIAA0226L Nonsense_Mutation p.Q362* 0.28 TCGA-DR-A0ZM-01 13 50366636 50366636 C T KPNA3 Missense_Mutation p.E3K 0.18 deleterious(0.04) benign(0.001) TCGA-DR-A0ZM-01 13 52348140 52348140 G A DHRS12 Nonsense_Mutation p.Q181* 0.25 TCGA-DR-A0ZM-01 13 52604768 52604768 G C UTP14C Missense_Mutation p.E610Q 0.24 deleterious(0) probably_damaging(0.959) TCGA-DR-A0ZM-01 13 52657447 52657447 C G NEK5 Missense_Mutation p.K507N 0.22 deleterious(0) possibly_damaging(0.649) TCGA-DR-A0ZM-01 13 52667254 52667254 G A NEK5 Nonsense_Mutation p.Q382* 0.22 TCGA-DR-A0ZM-01 13 53216872 53216872 G A HNRNPA1L2 Missense_Mutation p.R82K 0.10 tolerated(0.06) probably_damaging(0.957) TCGA-DR-A0ZM-01 13 73318687 73318687 G C BORA Missense_Mutation p.E167Q 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-DR-A0ZM-01 13 75869023 75869023 G C TBC1D4 Missense_Mutation p.Q1095E 0.07 deleterious(0) probably_damaging(0.948) TCGA-DR-A0ZM-01 13 77642713 77642713 C G MYCBP2 Missense_Mutation p.R4015T 0.07 probably_damaging(0.961) TCGA-DR-A0ZM-01 13 79916921 79916921 C G RBM26 Missense_Mutation p.D742H 0.25 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 13 84454215 84454215 G T SLITRK1 Silent p.L476L 0.22 TCGA-DR-A0ZM-01 14 100604120 100604120 C G EVL Missense_Mutation p.Q359E 0.23 tolerated(0.64) probably_damaging(0.985) TCGA-DR-A0ZM-01 14 101005433 101005433 G A BEGAIN Missense_Mutation p.R219W 0.40 deleterious(0) possibly_damaging(0.685) TCGA-DR-A0ZM-01 14 105259018 105259018 C G AKT1 5'UTR 0.23 TCGA-DR-A0ZM-01 14 105410048 105410048 C G AHNAK2 Missense_Mutation p.D3914H 0.19 probably_damaging(0.996) TCGA-DR-A0ZM-01 14 105643316 105643316 C T NUDT14 Silent p.V58V 0.23 TCGA-DR-A0ZM-01 14 19377637 19377637 C T OR11H12 Missense_Mutation p.S15F 0.10 tolerated(0.07) benign(0.02) TCGA-DR-A0ZM-01 14 20944590 20944590 C T PNP Nonsense_Mutation p.R234* 0.27 TCGA-DR-A0ZM-01 14 21868704 21868704 C G CHD8 Missense_Mutation p.E1480Q 0.07 deleterious(0.02) possibly_damaging(0.628) TCGA-DR-A0ZM-01 14 21870148 21870148 C T CHD8 Missense_Mutation p.E1344K 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-DR-A0ZM-01 14 21870187 21870187 C G CHD8 Missense_Mutation p.D1331H 0.17 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 14 22102067 22102067 C T OR10G2 Silent p.%3D 0.16 TCGA-DR-A0ZM-01 14 23043981 23043981 C T DAD1 3'UTR 0.19 TCGA-DR-A0ZM-01 14 23821025 23821025 C G SLC22A17 Missense_Mutation p.E103Q 0.14 tolerated(0.29) probably_damaging(0.992) TCGA-DR-A0ZM-01 14 23844999 23844999 G A IL25 Silent p.E148E 0.20 TCGA-DR-A0ZM-01 14 24522998 24522998 G C LRRC16B Missense_Mutation p.E41Q 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-DR-A0ZM-01 14 24588935 24588935 G C DCAF11 Missense_Mutation p.D308H 0.24 deleterious(0.02) probably_damaging(0.973) TCGA-DR-A0ZM-01 14 24765737 24765737 C T DHRS1 Missense_Mutation p.D118N 0.20 tolerated(0.08) benign(0.316) TCGA-DR-A0ZM-01 14 31358950 31358950 G C COCH Missense_Mutation p.D536H 0.26 tolerated(0.08) probably_damaging(0.942) TCGA-DR-A0ZM-01 14 33015502 33015502 C G AKAP6 Missense_Mutation p.S548C 0.28 deleterious(0) possibly_damaging(0.606) TCGA-DR-A0ZM-01 14 36125063 36125063 G A RALGAPA1 Missense_Mutation p.H1310Y 0.20 tolerated(1) benign(0.331) TCGA-DR-A0ZM-01 14 38724388 38724388 C T CLEC14A Silent p.G280G 0.18 TCGA-DR-A0ZM-01 14 39716772 39716772 G A MIA2 Missense_Mutation p.E332K 0.18 tolerated(1) benign(0.006) TCGA-DR-A0ZM-01 14 42361085 42361085 C G LRFN5 Nonsense_Mutation p.S673* 0.18 TCGA-DR-A0ZM-01 14 45564749 45564749 C T PRPF39 Nonsense_Mutation p.Q103* 0.33 TCGA-DR-A0ZM-01 14 50087869 50087869 G - MGAT2 5'UTR 0.29 TCGA-DR-A0ZM-01 14 50088567 50088567 G C MGAT2 Missense_Mutation p.R194T 0.25 deleterious(0.03) possibly_damaging(0.906) TCGA-DR-A0ZM-01 14 51192747 51192747 C T NIN Missense_Mutation p.R2039Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 14 51404508 51404508 C T PYGL Silent p.Q97Q 0.17 TCGA-DR-A0ZM-01 14 52986004 52986004 G C TXNDC16 Missense_Mutation p.L134V 0.11 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 14 54903140 54903140 C T CNIH1 Missense_Mutation p.E33K 0.21 deleterious(0.02) possibly_damaging(0.792) TCGA-DR-A0ZM-01 14 55168941 55168941 G C SAMD4A Missense_Mutation p.E120Q 0.24 deleterious(0) possibly_damaging(0.906) TCGA-DR-A0ZM-01 14 57938052 57938052 C T C14orf105 3'UTR 0.30 TCGA-DR-A0ZM-01 14 57938127 57938127 C T C14orf105 Silent p.V279V 0.34 TCGA-DR-A0ZM-01 14 58832749 58832749 C T ARID4A Silent p.S1108S 0.29 TCGA-DR-A0ZM-01 14 59782054 59782054 C G DAAM1 Silent p.L110L 0.24 TCGA-DR-A0ZM-01 14 59821958 59821958 G A DAAM1 Missense_Mutation p.G821E 0.19 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 14 60749624 60749624 C T PPM1A Missense_Mutation p.A141V 0.05 deleterious(0) probably_damaging(0.968) TCGA-DR-A0ZM-01 14 64518990 64518990 G A SYNE2 Missense_Mutation p.E2787K 0.23 benign(0.008) TCGA-DR-A0ZM-01 14 64519002 64519002 G T SYNE2 Missense_Mutation p.D2791Y 0.24 possibly_damaging(0.807) TCGA-DR-A0ZM-01 14 64564841 64564841 G C SYNE2 Missense_Mutation p.E4095Q 0.22 possibly_damaging(0.843) TCGA-DR-A0ZM-01 14 64565537 64565537 G A SYNE2 Missense_Mutation p.D4127N 0.11 benign(0.013) TCGA-DR-A0ZM-01 14 64608744 64608744 G A SYNE2 Missense_Mutation p.E5082K 0.24 benign(0.053) TCGA-DR-A0ZM-01 14 65543040 65543040 G C MAX 3'UTR 0.33 TCGA-DR-A0ZM-01 14 67799667 67799667 G A MPP5 Silent p.L674L 0.16 TCGA-DR-A0ZM-01 14 67850119 67850119 G C EIF2S1 Missense_Mutation p.D304H 0.19 deleterious(0) unknown(0) TCGA-DR-A0ZM-01 14 68257344 68257344 C A ZFYVE26 Silent p.R900R 0.26 TCGA-DR-A0ZM-01 14 69262694 69262694 C G ZFP36L1 5'Flank 0.30 TCGA-DR-A0ZM-01 14 72055659 72055659 G C SIPA1L1 Missense_Mutation p.R357T 0.16 deleterious(0) benign(0.212) TCGA-DR-A0ZM-01 14 73190406 73190406 C T DPF3 Missense_Mutation p.E154K 0.20 tolerated(0.36) benign(0.08) TCGA-DR-A0ZM-01 14 74400994 74400994 G C FAM161B Missense_Mutation p.H700D 0.04 tolerated_low_confidence(0.05) benign(0.053) TCGA-DR-A0ZM-01 14 74756735 74756735 C T ABCD4 Missense_Mutation p.E472K 0.26 deleterious(0) possibly_damaging(0.842) TCGA-DR-A0ZM-01 14 75264371 75264371 G A YLPM1 Missense_Mutation p.D791N 0.16 probably_damaging(0.992) TCGA-DR-A0ZM-01 14 77273120 77273120 C G ANGEL1 Missense_Mutation p.R340T 0.21 deleterious(0.01) possibly_damaging(0.785) TCGA-DR-A0ZM-01 14 88983588 88983588 G A PTPN21 Silent p.L66L 0.21 TCGA-DR-A0ZM-01 14 91681877 91681877 C G C14orf159 Missense_Mutation p.Q565E 0.23 tolerated(0.68) benign(0.008) TCGA-DR-A0ZM-01 14 91931636 91931636 C T SMEK1 Silent p.L583L 0.27 TCGA-DR-A0ZM-01 14 93396082 93396082 C T CHGA Nonsense_Mutation p.Q93* 0.22 TCGA-DR-A0ZM-01 14 94038402 94038402 C T UNC79 Nonsense_Mutation p.Q463* 0.26 TCGA-DR-A0ZM-01 14 94563223 94563223 C G IFI27L1 Intron 0.20 TCGA-DR-A0ZM-01 14 96757971 96757971 C T ATG2B Missense_Mutation p.E1849K 0.28 deleterious(0) possibly_damaging(0.878) TCGA-DR-A0ZM-01 14 96864440 96864440 C A AK7 Nonsense_Mutation p.S45* 0.06 TCGA-DR-A0ZM-01 15 101971654 101971654 C G PCSK6 Missense_Mutation p.K175N 0.22 tolerated(0.59) benign(0.012) TCGA-DR-A0ZM-01 15 23811531 23811531 C T MKRN3 Missense_Mutation p.A201V 0.25 tolerated(0.42) benign(0.001) TCGA-DR-A0ZM-01 15 33872331 33872331 C G RYR3 Missense_Mutation p.L475V 0.25 possibly_damaging(0.815) TCGA-DR-A0ZM-01 15 33988603 33988603 C T RYR3 Silent p.I2015I 0.26 TCGA-DR-A0ZM-01 15 34553159 34553159 C T SLC12A6 Missense_Mutation p.E127K 0.16 tolerated(0.31) benign(0.103) TCGA-DR-A0ZM-01 15 35166070 35166070 G A AQR Nonsense_Mutation p.Q1186* 0.30 TCGA-DR-A0ZM-01 15 40764159 40764159 G A CHST14 Silent p.A249A 0.21 TCGA-DR-A0ZM-01 15 41275976 41275976 G A INO80 Silent p.V1407V 0.26 TCGA-DR-A0ZM-01 15 41815045 41815045 G A RPAP1 Missense_Mutation p.S887L 0.29 deleterious(0.02) benign(0.118) TCGA-DR-A0ZM-01 15 42446305 42446305 G A PLA2G4F Silent p.F145F 0.16 TCGA-DR-A0ZM-01 15 42680062 42680062 C G CAPN3 Missense_Mutation p.L204V 0.21 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 15 42731632 42731632 C T ZNF106 Silent p.K1358K 0.23 TCGA-DR-A0ZM-01 15 43044395 43044395 C G TTBK2 Missense_Mutation p.E1017Q 0.18 deleterious(0) benign(0.432) TCGA-DR-A0ZM-01 15 43470851 43470851 G C TMEM62 Missense_Mutation p.L476F 0.06 tolerated(0.14) probably_damaging(0.992) TCGA-DR-A0ZM-01 15 43658612 43658612 C T ZSCAN29 Silent p.Q306Q 0.21 TCGA-DR-A0ZM-01 15 43814640 43814640 C G MAP1A Silent p.L323L 0.22 TCGA-DR-A0ZM-01 15 44068050 44068050 G A ELL3 Missense_Mutation p.S118F 0.21 deleterious(0.03) benign(0.2) TCGA-DR-A0ZM-01 15 45007833 45007833 G A B2M Missense_Mutation p.E94K 0.18 tolerated(0.79) benign(0.009) TCGA-DR-A0ZM-01 15 49048135 49048135 G A CEP152 Silent p.L1104L 0.26 TCGA-DR-A0ZM-01 15 49083487 49083487 G C CEP152 Missense_Mutation p.Q307E 0.05 deleterious(0) probably_damaging(0.978) TCGA-DR-A0ZM-01 15 50190329 50190329 C T ATP8B4 Silent p.K803K 0.24 TCGA-DR-A0ZM-01 15 50596276 50596276 C G GABPB1 Missense_Mutation p.E55Q 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-DR-A0ZM-01 15 51768825 51768825 C G DMXL2 Missense_Mutation p.E2309Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 15 52058618 52058618 G A TMOD2 5'UTR 0.20 TCGA-DR-A0ZM-01 15 52090411 52090411 G A TMOD2 Silent p.L250L 0.23 TCGA-DR-A0ZM-01 15 52901377 52901377 C T FAM214A Silent p.L578L 0.24 TCGA-DR-A0ZM-01 15 55664134 55664134 G A CCPG1 Missense_Mutation p.S188L 0.24 deleterious(0.02) benign(0.22) TCGA-DR-A0ZM-01 15 58357776 58357776 G C ALDH1A2 Missense_Mutation p.L25V 0.20 tolerated_low_confidence(0.24) benign(0.02) TCGA-DR-A0ZM-01 15 59323793 59323793 G A RNF111 Missense_Mutation p.E258K 0.20 tolerated(0.08) probably_damaging(0.972) TCGA-DR-A0ZM-01 15 64701923 64701923 G A TRIP4 Silent p.L313L 0.24 TCGA-DR-A0ZM-01 15 65157149 65157149 G A PLEKHO2 Missense_Mutation p.D179N 0.22 deleterious(0.05) benign(0.059) TCGA-DR-A0ZM-01 15 66180230 66180230 G C RAB11A 3'UTR 0.20 TCGA-DR-A0ZM-01 15 66618191 66618191 G A DIS3L Missense_Mutation p.E564K 0.21 deleterious(0.04) possibly_damaging(0.491) TCGA-DR-A0ZM-01 15 67664960 67664960 C G IQCH Nonsense_Mutation p.S422* 0.20 TCGA-DR-A0ZM-01 15 69320759 69320759 G A NOX5 Intron 0.28 TCGA-DR-A0ZM-01 15 71125446 71125446 G C LARP6 Missense_Mutation p.L141V 0.10 deleterious(0) probably_damaging(0.99) TCGA-DR-A0ZM-01 15 72231235 72231235 G C MYO9A Missense_Mutation p.S779C 0.19 deleterious(0.02) probably_damaging(0.976) TCGA-DR-A0ZM-01 15 72460080 72460080 G C GRAMD2 Missense_Mutation p.I123M 0.21 deleterious(0) probably_damaging(0.983) TCGA-DR-A0ZM-01 15 72699036 72699036 G A TMEM202 Missense_Mutation p.R144Q 0.21 deleterious(0.05) benign(0.008) TCGA-DR-A0ZM-01 15 73562772 73562772 C T NEO1 Missense_Mutation p.A945V 0.14 tolerated(0.2) probably_damaging(0.999) TCGA-DR-A0ZM-01 15 74315461 74315461 G C PML Missense_Mutation p.E299Q 0.17 tolerated(0.23) benign(0.072) TCGA-DR-A0ZM-01 15 74474749 74474749 G A STRA6 Silent p.F490F 0.21 TCGA-DR-A0ZM-01 15 74922134 74922134 C G CLK3 Missense_Mutation p.I609M 0.14 deleterious(0.04) possibly_damaging(0.737) TCGA-DR-A0ZM-01 15 75047222 75047222 G C CYP1A2 Missense_Mutation p.M448I 0.23 tolerated(0.05) benign(0.001) TCGA-DR-A0ZM-01 15 75692404 75692404 G C SIN3A Missense_Mutation p.R611G 0.18 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 15 75980337 75980337 G T CSPG4 Silent p.I1023I 0.19 TCGA-DR-A0ZM-01 15 75981898 75981898 T A CSPG4 Missense_Mutation p.K503M 0.28 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 15 78305568 78305568 G C TBC1D2B Missense_Mutation p.L623V 0.25 tolerated(0.52) possibly_damaging(0.468) TCGA-DR-A0ZM-01 15 78775677 78775677 G C IREB2 Silent p.L438L 0.09 TCGA-DR-A0ZM-01 15 80423554 80423554 G A ZFAND6 Missense_Mutation p.E133K 0.12 tolerated(0.13) possibly_damaging(0.67) TCGA-DR-A0ZM-01 15 82533678 82533678 G C EFTUD1 Nonsense_Mutation p.S104* 0.24 TCGA-DR-A0ZM-01 15 85191128 85191128 C G WDR73 Missense_Mutation p.E115D 0.19 tolerated(0.17) probably_damaging(0.998) TCGA-DR-A0ZM-01 15 88420084 88420084 G A NTRK3 3'UTR 0.34 TCGA-DR-A0ZM-01 15 89391202 89391202 C T ACAN Silent p.V555V 0.28 TCGA-DR-A0ZM-01 15 89862178 89862178 G A POLG Missense_Mutation p.S1086L 0.11 tolerated(0.2) benign(0.244) TCGA-DR-A0ZM-01 15 90349434 90349434 G A ANPEP Silent p.L127L 0.22 TCGA-DR-A0ZM-01 15 91304065 91304065 G C BLM Missense_Mutation p.E488Q 0.23 tolerated(0.06) benign(0.214) TCGA-DR-A0ZM-01 15 92459366 92459366 G C SLCO3A1 Silent p.L108L 0.26 TCGA-DR-A0ZM-01 15 94841724 94841724 C T MCTP2 Missense_Mutation p.S77L 0.27 tolerated(0.06) benign(0.154) TCGA-DR-A0ZM-01 16 12798556 12798556 C T CPPED1 Missense_Mutation p.D214N 0.23 deleterious(0.02) benign(0.145) TCGA-DR-A0ZM-01 16 1591971 1591971 C A TMEM204 Silent p.L110L 0.22 TCGA-DR-A0ZM-01 16 16255325 16255325 G C ABCC6 Silent p.L1201L 0.20 TCGA-DR-A0ZM-01 16 16282745 16282745 G C ABCC6 Silent p.L574L 0.22 TCGA-DR-A0ZM-01 16 1715111 1715111 C T CRAMP1L Silent p.F908F 0.17 TCGA-DR-A0ZM-01 16 18602481 18602481 G C ABCC6P1 RNA 0.23 TCGA-DR-A0ZM-01 16 21152008 21152008 G A DNAH3 Missense_Mutation p.S182L 0.06 tolerated(0.31) benign(0) TCGA-DR-A0ZM-01 16 2129555 2129555 C G TSC2 Intron 0.19 TCGA-DR-A0ZM-01 16 2164353 2164353 C T PKD1 Missense_Mutation p.D891N 0.29 benign(0.082) TCGA-DR-A0ZM-01 16 21812093 21812093 G T RRN3P1 RNA 0.16 TCGA-DR-A0ZM-01 16 2236729 2236729 C T CASKIN1 Missense_Mutation p.E343K 0.21 probably_damaging(0.997) TCGA-DR-A0ZM-01 16 23224211 23224211 C T SCNN1G Missense_Mutation p.S476L 0.18 deleterious(0) probably_damaging(0.994) TCGA-DR-A0ZM-01 16 2808478 2808478 C T SRRM2 Missense_Mutation p.R175W 0.20 unknown(0) TCGA-DR-A0ZM-01 16 28192332 28192332 G C XPO6 Silent p.L8L 0.31 TCGA-DR-A0ZM-01 16 29883830 29883830 G T SEZ6L2 Missense_Mutation p.P836T 0.14 tolerated(0.27) benign(0.032) TCGA-DR-A0ZM-01 16 30776605 30776605 G A RNF40 Missense_Mutation p.R292Q 0.25 deleterious(0.03) possibly_damaging(0.537) TCGA-DR-A0ZM-01 16 31089929 31089929 G C ZNF646 Missense_Mutation p.E762Q 0.21 tolerated(0.12) benign(0.017) TCGA-DR-A0ZM-01 16 31090025 31090025 G C ZNF646 Missense_Mutation p.D794H 0.24 deleterious(0.01) possibly_damaging(0.873) TCGA-DR-A0ZM-01 16 31733961 31733961 C T ZNF720 Silent p.F6F 0.15 TCGA-DR-A0ZM-01 16 3433401 3433401 G C ZSCAN32 Silent p.L303L 0.23 TCGA-DR-A0ZM-01 16 3900459 3900459 G A CREBBP Missense_Mutation p.L213F 0.24 probably_damaging(0.979) TCGA-DR-A0ZM-01 16 4322790 4322790 C G TFAP4 5'UTR 0.24 TCGA-DR-A0ZM-01 16 4383413 4383413 G C GLIS2 Missense_Mutation p.D80H 0.16 deleterious(0) probably_damaging(0.993) TCGA-DR-A0ZM-01 16 4383476 4383476 G A GLIS2 Missense_Mutation p.E101K 0.26 deleterious(0.03) benign(0.365) TCGA-DR-A0ZM-01 16 4412623 4412623 C G CORO7 Missense_Mutation p.Q464H 0.17 tolerated(0.13) benign(0.017) TCGA-DR-A0ZM-01 16 49433132 49433132 C G C16orf78 Silent p.V247V 0.24 TCGA-DR-A0ZM-01 16 50100092 50100092 C T HEATR3 Missense_Mutation p.T17M 0.20 deleterious(0) possibly_damaging(0.693) TCGA-DR-A0ZM-01 16 50332831 50332831 G A ADCY7 Missense_Mutation p.R322Q 0.15 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 16 5058617 5058617 C G SEC14L5 Missense_Mutation p.P590A 0.14 tolerated(0.13) benign(0.234) TCGA-DR-A0ZM-01 16 50745680 50745680 G A NOD2 Missense_Mutation p.D620N 0.28 tolerated(0.62) benign(0.062) TCGA-DR-A0ZM-01 16 5134874 5134874 G A ALG1 Missense_Mutation p.D463N 0.11 tolerated(0.16) benign(0.015) TCGA-DR-A0ZM-01 16 55525710 55525710 C T MMP2 Intron 0.27 TCGA-DR-A0ZM-01 16 56918016 56918016 C T SLC12A3 Silent p.I575I 0.19 TCGA-DR-A0ZM-01 16 57468100 57468100 C T CIAPIN1 Missense_Mutation p.E138K 0.20 tolerated(0.09) benign(0.013) TCGA-DR-A0ZM-01 16 57494598 57494598 G A COQ9 3'UTR 0.12 TCGA-DR-A0ZM-01 16 57503910 57503910 G C POLR2C Silent p.L159L 0.19 TCGA-DR-A0ZM-01 16 57601501 57601501 C T GPR114 Silent p.F273F 0.23 TCGA-DR-A0ZM-01 16 57789806 57789806 C T KATNB1 Silent p.L540L 0.17 TCGA-DR-A0ZM-01 16 58426654 58426654 G A GINS3 Missense_Mutation p.R50Q 0.25 tolerated(0.54) benign(0.012) TCGA-DR-A0ZM-01 16 58768070 58768070 G A GOT2 Silent p.L21L 0.10 TCGA-DR-A0ZM-01 16 66764083 66764083 C - DYNC1LI2 Frame_Shift_Del p.E325Kfs*6 0.24 TCGA-DR-A0ZM-01 16 67200473 67200473 C T HSF4 Missense_Mutation p.L192F 0.19 deleterious(0) possibly_damaging(0.656) TCGA-DR-A0ZM-01 16 67235753 67235753 G C ELMO3 Missense_Mutation p.E396Q 0.19 deleterious(0.04) probably_damaging(0.962) TCGA-DR-A0ZM-01 16 67236241 67236241 G A ELMO3 Intron 0.24 TCGA-DR-A0ZM-01 16 67876870 67876870 C A THAP11 Missense_Mutation p.S138Y 0.15 tolerated_low_confidence(0.06) unknown(0) TCGA-DR-A0ZM-01 16 67910814 67910814 G C EDC4 Missense_Mutation p.Q130H 0.19 tolerated(0.96) benign(0.021) TCGA-DR-A0ZM-01 16 67974263 67974263 G A LCAT Silent p.F289F 0.27 TCGA-DR-A0ZM-01 16 67974298 67974298 G A LCAT Missense_Mutation p.P278S 0.16 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 16 67974359 67974359 G A LCAT Silent p.I257I 0.20 TCGA-DR-A0ZM-01 16 67974364 67974364 G A LCAT Missense_Mutation p.P256S 0.18 tolerated(0.08) possibly_damaging(0.449) TCGA-DR-A0ZM-01 16 68090294 68090294 C G DUS2 Silent p.V112V 0.20 TCGA-DR-A0ZM-01 16 68156798 68156798 C G NFATC3 Missense_Mutation p.L338V 0.24 tolerated(0.5) probably_damaging(0.984) TCGA-DR-A0ZM-01 16 69147371 69147371 C G HAS3 Missense_Mutation p.P222A 0.25 deleterious(0.03) benign(0.236) TCGA-DR-A0ZM-01 16 69776286 69776286 C G NOB1 Silent p.R396R 0.27 TCGA-DR-A0ZM-01 16 71015349 71015349 C T HYDIN Silent p.L1485L 0.18 TCGA-DR-A0ZM-01 16 71570649 71570649 C G CHST4 Missense_Mutation p.F23L 0.20 tolerated(0.39) benign(0.003) TCGA-DR-A0ZM-01 16 75563112 75563112 C T CHST5 Missense_Mutation p.D391N 0.12 tolerated(1) benign(0.032) TCGA-DR-A0ZM-01 16 85689362 85689362 G A GSE1 Silent p.L276L 0.19 TCGA-DR-A0ZM-01 16 88878028 88878028 G A APRT Silent p.F39F 0.20 TCGA-DR-A0ZM-01 16 89603184 89603184 G A SPG7 Intron 0.23 TCGA-DR-A0ZM-01 16 89724711 89724711 G A SPATA33 Silent p.L30L 0.32 TCGA-DR-A0ZM-01 16 89764620 89764620 C G SPATA2L Missense_Mutation p.D133H 0.22 deleterious(0) probably_damaging(0.968) TCGA-DR-A0ZM-01 16 89804295 89804295 C T ZNF276 Missense_Mutation p.S519L 0.23 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 16 90001669 90001669 C T TUBB3 Silent p.F270F 0.21 TCGA-DR-A0ZM-01 16 90025502 90025502 G C DEF8 Missense_Mutation p.Q212H 0.04 tolerated(0.24) benign(0.029) TCGA-DR-A0ZM-01 17 10210315 10210315 C G MYH13 Missense_Mutation p.E1746Q 0.15 deleterious(0.01) benign(0.296) TCGA-DR-A0ZM-01 17 10558218 10558218 G A MYH3 Missense_Mutation p.S55F 0.21 deleterious(0.01) possibly_damaging(0.472) TCGA-DR-A0ZM-01 17 12893363 12893363 G C ARHGAP44 Missense_Mutation p.D778H 0.21 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-DR-A0ZM-01 17 16021223 16021223 G A NCOR1 Silent p.L678L 0.21 TCGA-DR-A0ZM-01 17 17723446 17723446 G A SREBF1 Missense_Mutation p.P191S 0.19 tolerated(0.17) benign(0.094) TCGA-DR-A0ZM-01 17 17723701 17723701 G C SREBF1 Missense_Mutation p.P106A 0.08 tolerated(0.29) benign(0.234) TCGA-DR-A0ZM-01 17 18232688 18232688 G C SHMT1 Missense_Mutation p.L396V 0.23 deleterious(0.02) possibly_damaging(0.534) TCGA-DR-A0ZM-01 17 18702243 18702243 G C TVP23B Missense_Mutation p.R150T 0.13 deleterious(0.03) benign(0.022) TCGA-DR-A0ZM-01 17 19289684 19289684 G C MFAP4 Missense_Mutation p.S84W 0.17 tolerated(0.05) possibly_damaging(0.856) TCGA-DR-A0ZM-01 17 20217439 20217439 G C SPECC1 3'UTR 0.20 TCGA-DR-A0ZM-01 17 2195915 2195915 C T SMG6 Silent p.L756L 0.27 TCGA-DR-A0ZM-01 17 2596110 2596110 C G CLUH Silent p.V1053V 0.38 TCGA-DR-A0ZM-01 17 26108115 26108115 G A NOS2 Nonsense_Mutation p.Q271* 0.18 TCGA-DR-A0ZM-01 17 27064452 27064452 C T NEK8 Silent p.L249L 0.05 TCGA-DR-A0ZM-01 17 27869933 27869933 C G TAOK1 Missense_Mutation p.Q967E 0.21 deleterious_low_confidence(0.01) benign(0.194) TCGA-DR-A0ZM-01 17 27939913 27939913 C T ANKRD13B Silent p.I528I 0.21 TCGA-DR-A0ZM-01 17 27943334 27943334 C G CORO6 Missense_Mutation p.R342T 0.24 tolerated(0.19) possibly_damaging(0.815) TCGA-DR-A0ZM-01 17 28576012 28576012 G T BLMH 3'UTR 0.14 TCGA-DR-A0ZM-01 17 29663832 29663832 C T NF1 Silent p.F2109F 0.16 TCGA-DR-A0ZM-01 17 33266229 33266229 G A CCT6B Missense_Mutation p.R396C 0.24 deleterious(0.02) possibly_damaging(0.893) TCGA-DR-A0ZM-01 17 33446700 33446700 C G RAD51D 5'UTR 0.29 TCGA-DR-A0ZM-01 17 33586072 33586072 G C SLFN5 Missense_Mutation p.E121D 0.28 tolerated(0.37) benign(0.001) TCGA-DR-A0ZM-01 17 34185207 34185207 G C C17orf66 Missense_Mutation p.F383L 0.24 tolerated(0.12) possibly_damaging(0.469) TCGA-DR-A0ZM-01 17 35346666 35346666 G C AATF Missense_Mutation p.E424Q 0.03 tolerated(0.06) benign(0.212) TCGA-DR-A0ZM-01 17 35346678 35346678 C T AATF Nonsense_Mutation p.Q428* 0.17 TCGA-DR-A0ZM-01 17 3559814 3559814 G C CTNS Silent p.L165L 0.17 TCGA-DR-A0ZM-01 17 36099554 36099554 C A HNF1B Missense_Mutation p.D141Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 17 36485974 36485974 G A GPR179 Missense_Mutation p.H1160Y 0.25 tolerated(0.06) benign(0.132) TCGA-DR-A0ZM-01 17 36498924 36498924 G A GPR179 Missense_Mutation p.S250F 0.27 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 17 37009982 37009982 G C RPL23 5'UTR 0.14 TCGA-DR-A0ZM-01 17 37188224 37188224 C G CTD-2206N4.2 5'Flank 0.45 TCGA-DR-A0ZM-01 17 37499465 37499465 G C FBXL20 Missense_Mutation p.I24M 0.14 deleterious(0) possibly_damaging(0.882) TCGA-DR-A0ZM-01 17 37565328 37565328 G C MED1 Missense_Mutation p.S1049C 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 17 38633662 38633662 G T TNS4 3'UTR 0.43 TCGA-DR-A0ZM-01 17 38633665 38633665 G A TNS4 3'UTR 0.43 TCGA-DR-A0ZM-01 17 38633671 38633671 G A TNS4 3'UTR 0.53 TCGA-DR-A0ZM-01 17 38645158 38645158 G C TNS4 Missense_Mutation p.S168C 0.05 tolerated(0.1) benign(0.033) TCGA-DR-A0ZM-01 17 3928361 3928361 G A ZZEF1 Missense_Mutation p.S2315F 0.23 deleterious(0.02) benign(0.372) TCGA-DR-A0ZM-01 17 39550303 39550303 G C KRT31 Missense_Mutation p.P406A 0.23 tolerated(0.23) benign(0.004) TCGA-DR-A0ZM-01 17 40054047 40054047 C T ACLY Missense_Mutation p.D462N 0.15 tolerated(0.52) benign(0) TCGA-DR-A0ZM-01 17 40342259 40342259 C T GHDC Missense_Mutation p.E440K 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-DR-A0ZM-01 17 41154798 41154798 G C RPL27 Missense_Mutation p.E120D 0.14 tolerated(0.11) benign(0.008) TCGA-DR-A0ZM-01 17 41226417 41226417 C T BRCA1 Missense_Mutation p.E1557K 0.15 tolerated(0.19) benign(0.001) TCGA-DR-A0ZM-01 17 41345409 41345409 G C NBR1 Missense_Mutation p.K426N 0.32 deleterious(0.02) benign(0.027) TCGA-DR-A0ZM-01 17 42153574 42153574 C G G6PC3 3'UTR 0.23 TCGA-DR-A0ZM-01 17 43101914 43101914 C G DCAKD Missense_Mutation p.E195Q 0.27 tolerated(0.59) benign(0.002) TCGA-DR-A0ZM-01 17 44954125 44954125 C T WNT9B 3'UTR 0.23 TCGA-DR-A0ZM-01 17 45368382 45368382 C G ITGB3 Missense_Mutation p.F396L 0.24 deleterious(0.02) probably_damaging(0.94) TCGA-DR-A0ZM-01 17 45918126 45918126 G A SCRN2 Silent p.I28I 0.16 TCGA-DR-A0ZM-01 17 46052532 46052532 C G CDK5RAP3 Silent p.L114L 0.17 TCGA-DR-A0ZM-01 17 46052645 46052645 C A CDK5RAP3 Missense_Mutation p.A152E 0.29 tolerated(0.91) benign(0.016) TCGA-DR-A0ZM-01 17 46135815 46135815 C G NFE2L1 Silent p.L377L 0.25 TCGA-DR-A0ZM-01 17 46196369 46196369 C G SNX11 Missense_Mutation p.S120R 0.26 tolerated(0.1) probably_damaging(1) TCGA-DR-A0ZM-01 17 46868950 46868950 G A TTLL6 Silent p.F338F 0.15 TCGA-DR-A0ZM-01 17 46933542 46933542 A G CALCOCO2 Missense_Mutation p.E358G 0.22 deleterious(0.02) possibly_damaging(0.582) TCGA-DR-A0ZM-01 17 4711670 4711670 C T PLD2 Silent p.L114L 0.24 TCGA-DR-A0ZM-01 17 4805969 4805969 C G CHRNE Missense_Mutation p.E46Q 0.21 tolerated(0.2) possibly_damaging(0.661) TCGA-DR-A0ZM-01 17 4836334 4836334 C G GP1BA Silent p.L145L 0.31 TCGA-DR-A0ZM-01 17 48694863 48694863 G C CACNA1G Missense_Mutation p.E1696Q 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-DR-A0ZM-01 17 48917322 48917322 G C WFIKKN2 Missense_Mutation p.E225Q 0.18 tolerated(0.09) probably_damaging(0.968) TCGA-DR-A0ZM-01 17 49284274 49284274 C G MBTD1 Missense_Mutation p.W193C 0.19 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 17 49710951 49710951 C T CA10 Missense_Mutation p.D284N 0.30 tolerated(0.68) probably_damaging(0.999) TCGA-DR-A0ZM-01 17 53016346 53016346 G C TOM1L1 Missense_Mutation p.M365I 0.30 tolerated(0.09) benign(0.01) TCGA-DR-A0ZM-01 17 5364391 5364391 G A DHX33 Silent p.F239F 0.18 TCGA-DR-A0ZM-01 17 54526454 54526454 G C ANKFN1 Missense_Mutation p.D375H 0.26 deleterious(0.01) possibly_damaging(0.831) TCGA-DR-A0ZM-01 17 56324982 56324982 C G LPO Missense_Mutation p.S103C 0.21 tolerated(0.11) benign(0.336) TCGA-DR-A0ZM-01 17 57292318 57292318 G C SMG8 Missense_Mutation p.M977I 0.19 tolerated(0.44) benign(0.056) TCGA-DR-A0ZM-01 17 57889099 57889099 C T VMP1 Silent p.F288F 0.25 TCGA-DR-A0ZM-01 17 59489402 59489402 C G C17orf82 Silent p.L22L 0.22 TCGA-DR-A0ZM-01 17 59999170 59999170 C T INTS2 Missense_Mutation p.E159K 0.20 deleterious(0.02) benign(0.159) TCGA-DR-A0ZM-01 17 60491167 60491167 G C EFCAB3 Missense_Mutation p.K366N 0.17 tolerated(0.07) possibly_damaging(0.707) TCGA-DR-A0ZM-01 17 61574500 61574500 C T ACE Missense_Mutation p.R1232C 0.32 deleterious(0.01) possibly_damaging(0.676) TCGA-DR-A0ZM-01 17 62034657 62034657 G C SCN4A Missense_Mutation p.F747L 0.18 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 17 62500815 62500815 C T DDX5 Missense_Mutation p.D64N 0.17 tolerated(0.62) benign(0.005) TCGA-DR-A0ZM-01 17 62788592 62788592 C T PLEKHM1P RNA 0.22 TCGA-DR-A0ZM-01 17 643789 643789 C T FAM57A Silent p.F151F 0.28 TCGA-DR-A0ZM-01 17 648334 648334 G C GEMIN4 Missense_Mutation p.F983L 0.23 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 17 6594154 6594154 C G SLC13A5 Missense_Mutation p.E461Q 0.05 deleterious(0.02) probably_damaging(0.953) TCGA-DR-A0ZM-01 17 66038376 66038376 G C KPNA2 Missense_Mutation p.D160H 0.24 deleterious(0.02) benign(0.094) TCGA-DR-A0ZM-01 17 66040016 66040016 G A KPNA2 Silent p.V331V 0.20 TCGA-DR-A0ZM-01 17 66538872 66538872 C T FAM20A Silent p.K297K 0.24 TCGA-DR-A0ZM-01 17 67212121 67212121 C G ABCA10 Missense_Mutation p.M231I 0.21 tolerated(0.07) benign(0.201) TCGA-DR-A0ZM-01 17 71204343 71204343 C G FAM104A 3'UTR 0.24 TCGA-DR-A0ZM-01 17 7125395 7125395 G A ACADVL Nonsense_Mutation p.W272* 0.18 TCGA-DR-A0ZM-01 17 71431603 71431603 T G SDK2 Missense_Mutation p.Y394S 0.14 deleterious(0.03) possibly_damaging(0.891) TCGA-DR-A0ZM-01 17 7196799 7196799 G T YBX2 Silent p.I110I 0.27 TCGA-DR-A0ZM-01 17 72921682 72921682 C T OTOP2 Silent p.L115L 0.20 TCGA-DR-A0ZM-01 17 73552126 73552126 G A LLGL2 Splice_Site p.X26_splice 0.23 TCGA-DR-A0ZM-01 17 7369795 7369795 G C ZBTB4 Missense_Mutation p.S109C 0.38 unknown(0) TCGA-DR-A0ZM-01 17 73738843 73738843 G C ITGB4 Splice_Site p.X988_splice 0.27 TCGA-DR-A0ZM-01 17 73813417 73813417 G A UNK Missense_Mutation p.R372K 0.23 tolerated(0.63) benign(0.049) TCGA-DR-A0ZM-01 17 73818677 73818677 G C UNK Missense_Mutation p.E653Q 0.27 tolerated(0.26) probably_damaging(0.993) TCGA-DR-A0ZM-01 17 73820444 73820444 G C UNK Missense_Mutation p.E793D 0.33 tolerated(0.13) benign(0.109) TCGA-DR-A0ZM-01 17 74001454 74001454 G C CDK3 Missense_Mutation p.E290Q 0.16 tolerated_low_confidence(0.12) benign(0.13) TCGA-DR-A0ZM-01 17 74072990 74072990 C G GALR2 Silent p.L214L 0.19 TCGA-DR-A0ZM-01 17 74158697 74158697 C T RNF157 Missense_Mutation p.G243E 0.18 deleterious(0.01) benign(0.196) TCGA-DR-A0ZM-01 17 74276386 74276386 G A QRICH2 Silent p.L1370L 0.22 TCGA-DR-A0ZM-01 17 74570585 74570585 G A ST6GALNAC2 Nonsense_Mutation p.Q75* 0.30 TCGA-DR-A0ZM-01 17 74625172 74625172 C T ST6GALNAC1 Silent p.L251L 0.25 TCGA-DR-A0ZM-01 17 7481234 7481234 G A EIF4A1 Silent p.L332L 0.23 TCGA-DR-A0ZM-01 17 76394392 76394392 C G PGS1 Silent p.L157L 0.18 TCGA-DR-A0ZM-01 17 76394407 76394407 C G PGS1 Silent p.L162L 0.15 TCGA-DR-A0ZM-01 17 76435191 76435191 C G DNAH17 Missense_Mutation p.G3915A 0.15 probably_damaging(1) TCGA-DR-A0ZM-01 17 76496644 76496644 G A DNAH17-AS1 3'UTR 0.38 TCGA-DR-A0ZM-01 17 7671479 7671479 C G DNAH2 Intron 0.24 TCGA-DR-A0ZM-01 17 76794610 76794610 C G USP36 Missense_Mutation p.K1088N 0.22 deleterious(0) probably_damaging(0.964) TCGA-DR-A0ZM-01 17 78272244 78272244 G A RNF213 Nonsense_Mutation p.W712* 0.06 TCGA-DR-A0ZM-01 17 78328272 78328272 C T RNF213 Silent p.L3586L 0.17 TCGA-DR-A0ZM-01 17 79650906 79650906 C T ARL16 5'UTR 0.29 TCGA-DR-A0ZM-01 17 80789825 80789826 - T ZNF750 Frame_Shift_Ins p.R169Kfs*53 0.36 TCGA-DR-A0ZM-01 17 80789969 80789969 C T ZNF750 Missense_Mutation p.G121E 0.22 tolerated(0.53) benign(0.022) TCGA-DR-A0ZM-01 17 8647949 8647949 C T CCDC42 5'UTR 0.28 TCGA-DR-A0ZM-01 18 13731616 13731616 G C RNMT Missense_Mutation p.E34Q 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-DR-A0ZM-01 18 13825853 13825853 C T MC5R Missense_Mutation p.S30F 0.19 tolerated(0.06) benign(0.008) TCGA-DR-A0ZM-01 18 14534913 14534913 C G POTEC Missense_Mutation p.D302H 0.11 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 18 19997772 19997772 C T CTAGE1 Translation_Start_Site p.M1? 0.37 tolerated(0.11) benign(0.192) TCGA-DR-A0ZM-01 18 21111533 21111533 C G NPC1 3'UTR 0.20 TCGA-DR-A0ZM-01 18 21111732 21111732 C G NPC1 3'UTR 0.21 TCGA-DR-A0ZM-01 18 21112035 21112035 C G NPC1 3'UTR 0.26 TCGA-DR-A0ZM-01 18 21134844 21134844 C T NPC1 Silent p.T477T 0.17 TCGA-DR-A0ZM-01 18 246446 246446 C G THOC1 Missense_Mutation p.E266Q 0.19 tolerated(0.07) probably_damaging(0.94) TCGA-DR-A0ZM-01 18 25583081 25583081 G T CDH2 Silent p.L300L 0.22 TCGA-DR-A0ZM-01 18 28993427 28993427 G C DSG4 Missense_Mutation p.G1017R 0.25 deleterious(0.02) possibly_damaging(0.568) TCGA-DR-A0ZM-01 18 29046629 29046629 G A DSG3 Silent p.L516L 0.21 TCGA-DR-A0ZM-01 18 29049131 29049131 G C DSG3 Missense_Mutation p.Q572H 0.24 tolerated(0.28) possibly_damaging(0.717) TCGA-DR-A0ZM-01 18 29054363 29054363 C T DSG3 Missense_Mutation p.S794F 0.19 deleterious(0) probably_damaging(0.954) TCGA-DR-A0ZM-01 18 29171890 29171890 C G TTR Missense_Mutation p.L9V 0.18 tolerated(0.82) benign(0.012) TCGA-DR-A0ZM-01 18 29437732 29437732 C G TRAPPC8 Missense_Mutation p.D987H 0.24 tolerated(0.1) benign(0.002) TCGA-DR-A0ZM-01 18 3456381 3456381 G C TGIF1 Missense_Mutation p.E145Q 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.722) TCGA-DR-A0ZM-01 18 346882 346882 A G COLEC12 Missense_Mutation p.V247A 0.20 tolerated(0.27) benign(0.006) TCGA-DR-A0ZM-01 18 39607392 39607392 C G PIK3C3 Intron 0.25 TCGA-DR-A0ZM-01 18 43447670 43447670 G A EPG5 Missense_Mutation p.S2090F 0.20 tolerated(0.5) benign(0.431) TCGA-DR-A0ZM-01 18 43467829 43467829 G A EPG5 Nonsense_Mutation p.Q1666* 0.20 TCGA-DR-A0ZM-01 18 50278549 50278549 A C DCC Missense_Mutation p.K73Q 0.20 deleterious(0.03) benign(0.032) TCGA-DR-A0ZM-01 18 60237357 60237357 C G ZCCHC2 Missense_Mutation p.S623C 0.30 tolerated(0.06) probably_damaging(0.998) TCGA-DR-A0ZM-01 18 67365819 67365819 G A DOK6 Missense_Mutation p.E197K 0.31 deleterious(0) probably_damaging(0.977) TCGA-DR-A0ZM-01 18 674174 674174 G A ENOSF1 3'UTR 0.23 TCGA-DR-A0ZM-01 18 67614259 67614259 C G CD226 Missense_Mutation p.E31D 0.27 deleterious(0.02) possibly_damaging(0.856) TCGA-DR-A0ZM-01 18 7009317 7009317 C T LAMA1 Missense_Mutation p.E1308K 0.20 tolerated(0.08) benign(0.071) TCGA-DR-A0ZM-01 18 70417733 70417733 G A NETO1 Missense_Mutation p.R369C 0.30 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 18 74616407 74616407 G C ZNF236 Missense_Mutation p.D654H 0.23 deleterious(0) probably_damaging(0.933) TCGA-DR-A0ZM-01 18 77895867 77895867 G A ADNP2 Silent p.V857V 0.25 TCGA-DR-A0ZM-01 18 8394576 8394576 G A PTPRM Silent p.L1437L 0.18 TCGA-DR-A0ZM-01 19 10203097 10203097 G T C19orf66 3'UTR 0.23 TCGA-DR-A0ZM-01 19 10218370 10218370 G C PPAN Intron 0.17 TCGA-DR-A0ZM-01 19 11034792 11034792 C T YIPF2 Silent p.R148R 0.15 TCGA-DR-A0ZM-01 19 11446153 11446153 C T RAB3D Missense_Mutation p.E148K 0.23 deleterious(0.02) possibly_damaging(0.503) TCGA-DR-A0ZM-01 19 11486627 11486627 C T SWSAP1 Missense_Mutation p.P209S 0.13 tolerated(0.12) benign(0.013) TCGA-DR-A0ZM-01 19 12155223 12155223 C T ZNF878 Silent p.K331K 0.25 TCGA-DR-A0ZM-01 19 12800031 12800031 C T FBXW9 Silent p.%3D 0.29 TCGA-DR-A0ZM-01 19 14262963 14262963 C T LPHN1 Splice_Site p.X1222_splice 0.09 TCGA-DR-A0ZM-01 19 14271452 14271452 C T LPHN1 Missense_Mutation p.D528N 0.28 deleterious(0.03) probably_damaging(0.982) TCGA-DR-A0ZM-01 19 14629110 14629110 C T DNAJB1 Missense_Mutation p.E18K 0.26 deleterious(0.04) possibly_damaging(0.686) TCGA-DR-A0ZM-01 19 15465808 15465808 C G AKAP8 Missense_Mutation p.R666T 0.23 tolerated_low_confidence(0.6) benign(0) TCGA-DR-A0ZM-01 19 15852820 15852820 C T OR10H3 Silent p.V206V 0.23 TCGA-DR-A0ZM-01 19 15853003 15853003 C A OR10H3 Silent p.L267L 0.28 TCGA-DR-A0ZM-01 19 15918293 15918293 C T OR10H1 Silent p.L185L 0.24 TCGA-DR-A0ZM-01 19 16275611 16275611 C G CIB3 Missense_Mutation p.D154H 0.22 deleterious(0) possibly_damaging(0.794) TCGA-DR-A0ZM-01 19 16926106 16926106 C G NWD1 3'UTR 0.27 TCGA-DR-A0ZM-01 19 17444512 17444512 C T ANO8 Silent p.L68L 0.19 TCGA-DR-A0ZM-01 19 17476175 17476175 C G PLVAP Missense_Mutation p.E367Q 0.25 tolerated(0.13) benign(0.246) TCGA-DR-A0ZM-01 19 18001725 18001725 G A SLC5A5 Missense_Mutation p.G561E 0.25 tolerated(0.22) probably_damaging(1) TCGA-DR-A0ZM-01 19 18254649 18254649 C G MAST3 Missense_Mutation p.L777V 0.26 tolerated(0.22) benign(0) TCGA-DR-A0ZM-01 19 18879564 18879564 G C CRTC1 Missense_Mutation p.E443D 0.24 tolerated_low_confidence(0.56) benign(0.007) TCGA-DR-A0ZM-01 19 18896802 18896802 G A COMP Missense_Mutation p.P488S 0.12 tolerated(0.27) benign(0.003) TCGA-DR-A0ZM-01 19 19221592 19221592 G C SLC25A42 Missense_Mutation p.L288F 0.15 deleterious(0.04) probably_damaging(1) TCGA-DR-A0ZM-01 19 19758021 19758021 C T ATP13A1 Missense_Mutation p.E1008K 0.24 tolerated(0.1) benign(0.016) TCGA-DR-A0ZM-01 19 20808319 20808319 C G ZNF626 Missense_Mutation p.E122Q 0.14 deleterious(0.01) benign(0.03) TCGA-DR-A0ZM-01 19 2226837 2226837 C T DOT1L Silent p.L1439L 0.39 TCGA-DR-A0ZM-01 19 23414089 23414089 C G ZNF724P Missense_Mutation p.E69Q 0.14 tolerated(0.11) possibly_damaging(0.727) TCGA-DR-A0ZM-01 19 23543184 23543184 G A ZNF91 Missense_Mutation p.S866F 0.26 tolerated(0.71) possibly_damaging(0.633) TCGA-DR-A0ZM-01 19 33444634 33444634 C G CEP89 Missense_Mutation p.E127Q 0.23 deleterious(0.01) possibly_damaging(0.678) TCGA-DR-A0ZM-01 19 33792481 33792481 C G CEBPA Missense_Mutation p.K280N 0.21 deleterious(0) probably_damaging(0.991) TCGA-DR-A0ZM-01 19 35450195 35450195 G C ZNF792 Missense_Mutation p.I188M 0.02 tolerated(0.07) benign(0.02) TCGA-DR-A0ZM-01 19 3557256 3557256 G C MFSD12 Missense_Mutation p.S49W 0.33 probably_damaging(0.959) TCGA-DR-A0ZM-01 19 3576258 3576258 G C HMG20B Splice_Site p.X158_splice 0.17 TCGA-DR-A0ZM-01 19 36104692 36104692 G C HAUS5 Missense_Mutation p.Q53H 0.29 deleterious(0.02) benign(0.056) TCGA-DR-A0ZM-01 19 36104782 36104782 G A HAUS5 Silent p.K58K 0.21 TCGA-DR-A0ZM-01 19 362382 362382 G A THEG Missense_Mutation p.R320C 0.03 deleterious(0.03) probably_damaging(0.949) TCGA-DR-A0ZM-01 19 36258752 36258752 G A C19orf55 Silent p.V335V 0.36 TCGA-DR-A0ZM-01 19 36330458 36330458 G A NPHS1 Missense_Mutation p.S956F 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-DR-A0ZM-01 19 36595563 36595563 G C WDR62 Missense_Mutation p.D1433H 0.18 deleterious(0) possibly_damaging(0.887) TCGA-DR-A0ZM-01 19 38189024 38189024 C G ZNF607 Missense_Mutation p.E670Q 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-DR-A0ZM-01 19 38230352 38230352 G C ZNF573 Missense_Mutation p.L347V 0.22 tolerated(0.83) possibly_damaging(0.699) TCGA-DR-A0ZM-01 19 38899528 38899528 G A FAM98C 3'UTR 0.21 TCGA-DR-A0ZM-01 19 38910838 38910838 G C RASGRP4 Missense_Mutation p.R148G 0.35 tolerated(0.09) benign(0.333) TCGA-DR-A0ZM-01 19 39760152 39760152 G A IFNL2 Missense_Mutation p.E99K 0.26 deleterious(0.04) benign(0.254) TCGA-DR-A0ZM-01 19 39798861 39798861 G C LRFN1 Silent p.L576L 0.13 TCGA-DR-A0ZM-01 19 3984340 3984340 G A EEF2 Silent p.F4F 0.19 TCGA-DR-A0ZM-01 19 40771139 40771139 G A AKT2 Silent p.L12L 0.14 TCGA-DR-A0ZM-01 19 41111433 41111433 G A LTBP4 Missense_Mutation p.E256K 0.25 tolerated(0.05) possibly_damaging(0.671) TCGA-DR-A0ZM-01 19 41944235 41944235 G A ATP5SL Nonsense_Mutation p.Q41* 0.27 TCGA-DR-A0ZM-01 19 42753675 42753675 C A ERF Nonsense_Mutation p.E197* 0.16 TCGA-DR-A0ZM-01 19 43358392 43358392 C G PSG10P RNA 0.23 TCGA-DR-A0ZM-01 19 43411294 43411294 G A PSG6 Silent p.F340F 0.03 TCGA-DR-A0ZM-01 19 43965792 43965792 G A LYPD3 Missense_Mutation p.S251L 0.20 tolerated(0.24) benign(0.001) TCGA-DR-A0ZM-01 19 44778242 44778242 G C ZNF233 Missense_Mutation p.E477Q 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-DR-A0ZM-01 19 45389236 45389236 G A PVRL2 Silent p.A413A 0.12 TCGA-DR-A0ZM-01 19 45735131 45735131 C T EXOC3L2 Intron 0.18 TCGA-DR-A0ZM-01 19 46198872 46198872 G A QPCTL Missense_Mutation p.G177R 0.27 tolerated(0.48) benign(0.415) TCGA-DR-A0ZM-01 19 46198873 46198873 G T QPCTL Missense_Mutation p.G177V 0.26 tolerated(0.15) possibly_damaging(0.485) TCGA-DR-A0ZM-01 19 46215971 46215971 G A FBXO46 Silent p.I261I 0.33 TCGA-DR-A0ZM-01 19 47109107 47109107 G C CALM3 Missense_Mutation p.Q9H 0.23 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-DR-A0ZM-01 19 47883165 47883165 G A DHX34 Missense_Mutation p.E969K 0.31 tolerated(0.44) benign(0.034) TCGA-DR-A0ZM-01 19 48653381 48653381 G A LIG1 Missense_Mutation p.P221S 0.21 tolerated(0.24) benign(0.022) TCGA-DR-A0ZM-01 19 48967909 48967909 C G KCNJ14 Missense_Mutation p.L396V 0.23 deleterious(0.02) probably_damaging(0.932) TCGA-DR-A0ZM-01 19 49100097 49100097 G A SULT2B1 Missense_Mutation p.M249I 0.21 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 19 49119188 49119188 C T RPL18 Missense_Mutation p.R146Q 0.26 tolerated(0.05) benign(0.002) TCGA-DR-A0ZM-01 19 49131293 49131293 C T SPHK2 Silent p.I241I 0.26 TCGA-DR-A0ZM-01 19 49425609 49425609 G C NUCB1 Missense_Mutation p.Q438H 0.13 deleterious(0.03) benign(0.003) TCGA-DR-A0ZM-01 19 49469965 49469965 C G FTL Missense_Mutation p.F167L 0.18 tolerated(0.05) benign(0.252) TCGA-DR-A0ZM-01 19 49470007 49470007 C G FTL 3'UTR 0.16 TCGA-DR-A0ZM-01 19 49519367 49519367 C T LHB Silent p.L128L 0.18 TCGA-DR-A0ZM-01 19 49601710 49601710 C G SNRNP70 Missense_Mutation p.Q98E 0.19 tolerated(0.4) benign(0.009) TCGA-DR-A0ZM-01 19 50059841 50059841 C G NOSIP Silent p.L230L 0.24 TCGA-DR-A0ZM-01 19 50154543 50154543 G A SCAF1 Silent p.E299E 0.27 TCGA-DR-A0ZM-01 19 50369700 50369700 C T PNKP Missense_Mutation p.E52K 0.16 tolerated(0.4) benign(0.014) TCGA-DR-A0ZM-01 19 50482462 50482462 G A VRK3 Silent p.L438L 0.18 TCGA-DR-A0ZM-01 19 50906815 50906815 C T POLD1 Silent p.F401F 0.20 TCGA-DR-A0ZM-01 19 50957566 50957566 G C MYBPC2 Missense_Mutation p.E652Q 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-DR-A0ZM-01 19 50962466 50962466 C T MYBPC2 Silent p.F898F 0.32 TCGA-DR-A0ZM-01 19 51328963 51328963 G A KLK15 3'Flank 0.21 TCGA-DR-A0ZM-01 19 53086765 53086765 G C ZNF701 3'UTR 0.19 TCGA-DR-A0ZM-01 19 54206023 54206023 C G MIR518B RNA 0.24 TCGA-DR-A0ZM-01 19 55176613 55176613 G C LILRB4 Missense_Mutation p.G247R 0.19 tolerated(0.35) benign(0.005) TCGA-DR-A0ZM-01 19 55451669 55451669 G A NLRP7 Missense_Mutation p.T173M 0.23 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 19 56223837 56223837 C T NLRP9 Missense_Mutation p.R874K 0.19 tolerated(1) benign(0.007) TCGA-DR-A0ZM-01 19 56424546 56424546 C G NLRP13 Missense_Mutation p.E213Q 0.03 tolerated(0.15) benign(0.005) TCGA-DR-A0ZM-01 19 58385050 58385050 G A ZNF814 Missense_Mutation p.H570Y 0.16 deleterious(0) benign(0.211) TCGA-DR-A0ZM-01 19 58438814 58438814 G A ZNF418 Silent p.V245V 0.24 TCGA-DR-A0ZM-01 19 5844109 5844109 C T FUT3 Missense_Mutation p.E248K 0.05 deleterious(0.03) benign(0.437) TCGA-DR-A0ZM-01 19 58565155 58565155 G A ZSCAN1 Silent p.P321P 0.26 TCGA-DR-A0ZM-01 19 58906057 58906057 G A RPS5 Silent p.S185S 0.22 TCGA-DR-A0ZM-01 19 621156 621156 G C POLRMT Missense_Mutation p.L848V 0.14 deleterious(0) probably_damaging(0.992) TCGA-DR-A0ZM-01 19 630038 630038 C G POLRMT Missense_Mutation p.Q108H 0.17 deleterious(0.04) benign(0.428) TCGA-DR-A0ZM-01 19 6908765 6908765 G C EMR1 Silent p.T368T 0.20 TCGA-DR-A0ZM-01 19 7550778 7550778 G C PEX11G Silent p.L65L 0.22 TCGA-DR-A0ZM-01 19 7689278 7689278 G A XAB2 Silent p.F292F 0.29 TCGA-DR-A0ZM-01 19 7693181 7693181 C T XAB2 Missense_Mutation p.E19K 0.16 deleterious(0.02) possibly_damaging(0.461) TCGA-DR-A0ZM-01 19 7795304 7795304 G A CLEC4G Silent p.A137A 0.15 TCGA-DR-A0ZM-01 19 7805561 7805561 G A CD209 3'UTR 0.16 TCGA-DR-A0ZM-01 19 8373047 8373047 G A CD320 Missense_Mutation p.S43F 0.27 tolerated(0.71) benign(0.087) TCGA-DR-A0ZM-01 19 881596 881596 G C MED16 Silent p.L368L 0.20 TCGA-DR-A0ZM-01 19 9014193 9014193 G C MUC16 Missense_Mutation p.Q12819E 0.18 benign(0.334) TCGA-DR-A0ZM-01 19 920505 920505 G A KISS1R Silent p.L318L 0.09 TCGA-DR-A0ZM-01 19 9771543 9771543 C G ZNF562 Intron 0.15 TCGA-DR-A0ZM-01 19 9968420 9968420 C T OLFM2 Missense_Mutation p.D111N 0.22 tolerated(0.11) benign(0.103) TCGA-DR-A0ZM-01 1 104114233 104114233 C G AMY2B Missense_Mutation p.F3L 0.10 tolerated(0.91) benign(0.001) TCGA-DR-A0ZM-01 1 104162377 104162377 G C AMY2A Missense_Mutation p.A239P 0.10 tolerated(0.45) benign(0.001) TCGA-DR-A0ZM-01 1 10464329 10464329 G C PGD Missense_Mutation p.E148Q 0.18 tolerated(0.14) benign(0.005) TCGA-DR-A0ZM-01 1 109814995 109814995 G C CELSR2 Missense_Mutation p.K2674N 0.15 tolerated(0.19) benign(0.412) TCGA-DR-A0ZM-01 1 110585728 110585728 G C STRIP1 Missense_Mutation p.E302Q 0.32 deleterious(0.04) probably_damaging(0.995) TCGA-DR-A0ZM-01 1 11073843 11073843 C T TARDBP Missense_Mutation p.S20L 0.23 tolerated(0.43) benign(0.003) TCGA-DR-A0ZM-01 1 110882622 110882622 G T RBM15 Missense_Mutation p.D199Y 0.21 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 1 110882687 110882687 G A RBM15 Silent p.V220V 0.21 TCGA-DR-A0ZM-01 1 112298320 112298320 C T DDX20 5'UTR 0.22 TCGA-DR-A0ZM-01 1 113238053 113238053 C G MOV10 Missense_Mutation p.P546A 0.24 deleterious(0.05) possibly_damaging(0.845) TCGA-DR-A0ZM-01 1 113256227 113256227 G C PPM1J Missense_Mutation p.I111M 0.21 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 1 114223935 114223935 G A MAGI3 Missense_Mutation p.G1102E 0.19 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 1 116234047 116234047 G C VANGL1 3'UTR 0.20 TCGA-DR-A0ZM-01 1 117626692 117626692 G A TTF2 Silent p.L652L 0.32 TCGA-DR-A0ZM-01 1 118482165 118482165 G A WDR3 Silent p.L215L 0.20 TCGA-DR-A0ZM-01 1 118491033 118491033 G A WDR3 Silent p.G476G 0.27 TCGA-DR-A0ZM-01 1 118523950 118523950 C A SPAG17 Missense_Mutation p.D1983Y 0.21 tolerated(0.1) benign(0.413) TCGA-DR-A0ZM-01 1 11855208 11855208 C T MTHFR Silent p.E326E 0.19 TCGA-DR-A0ZM-01 1 12009904 12009904 G A PLOD1 Silent p.L81L 0.27 TCGA-DR-A0ZM-01 1 1203298 1203298 C G UBE2J2 Missense_Mutation p.K25N 0.23 deleterious(0.02) possibly_damaging(0.889) TCGA-DR-A0ZM-01 1 1203343 1203343 C T UBE2J2 Silent p.P10P 0.24 TCGA-DR-A0ZM-01 1 120458064 120458064 A C NOTCH2 Missense_Mutation p.S2427R 0.18 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 1 12677172 12677172 C T DHRS3 Missense_Mutation p.R61H 0.21 tolerated(0.46) benign(0.005) TCGA-DR-A0ZM-01 1 145115802 145115802 G C SEC22B RNA 0.05 TCGA-DR-A0ZM-01 1 145440941 145440941 G C TXNIP Missense_Mutation p.R343P 0.14 deleterious(0.04) probably_damaging(0.915) TCGA-DR-A0ZM-01 1 145584227 145584227 G A PIAS3 Missense_Mutation p.D460N 0.11 tolerated(0.07) benign(0.334) TCGA-DR-A0ZM-01 1 145698917 145698917 C T CD160 Intron 0.17 TCGA-DR-A0ZM-01 1 146687380 146687380 C G FMO5 Missense_Mutation p.E90Q 0.15 tolerated(0.1) benign(0.2) TCGA-DR-A0ZM-01 1 147090719 147090719 G C BCL9 Missense_Mutation p.R253T 0.12 tolerated(0.28) benign(0.031) TCGA-DR-A0ZM-01 1 149859223 149859223 G C HIST2H2AB Missense_Mutation p.R82G 0.13 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DR-A0ZM-01 1 150082610 150082610 G C VPS45 Splice_Site p.X498_splice 0.10 TCGA-DR-A0ZM-01 1 150234978 150234978 G C CA14 Missense_Mutation p.E152Q 0.20 tolerated(0.94) benign(0) TCGA-DR-A0ZM-01 1 150463113 150463113 G A TARS2 Missense_Mutation p.A142T 0.17 deleterious(0.02) benign(0.102) TCGA-DR-A0ZM-01 1 150483777 150483777 C G ECM1 Intron 0.08 TCGA-DR-A0ZM-01 1 150671183 150671183 G A HORMAD1 Nonsense_Mutation p.Q378* 0.18 TCGA-DR-A0ZM-01 1 150722644 150722644 G C CTSS Missense_Mutation p.Q211E 0.07 tolerated(0.8) benign(0.002) TCGA-DR-A0ZM-01 1 150999800 150999800 G C PRUNE Missense_Mutation p.L257F 0.13 deleterious(0.02) benign(0.247) TCGA-DR-A0ZM-01 1 151138574 151138574 G A SCNM1 5'UTR 0.15 TCGA-DR-A0ZM-01 1 151204209 151204209 G C PIP5K1A Silent p.L100L 0.10 TCGA-DR-A0ZM-01 1 151204259 151204259 A C PIP5K1A Missense_Mutation p.E117A 0.08 deleterious(0) possibly_damaging(0.731) TCGA-DR-A0ZM-01 1 151206945 151206945 C T PIP5K1A Silent p.L304L 0.15 TCGA-DR-A0ZM-01 1 151262918 151262918 G C ZNF687 Missense_Mutation p.E1030Q 0.20 deleterious(0) probably_damaging(0.99) TCGA-DR-A0ZM-01 1 151747576 151747576 C G TDRKH Missense_Mutation p.E501Q 0.09 tolerated(0.09) benign(0.273) TCGA-DR-A0ZM-01 1 151773455 151773455 G A LINGO4 Missense_Mutation p.R576W 0.05 deleterious(0) possibly_damaging(0.853) TCGA-DR-A0ZM-01 1 152191898 152191898 G A HRNR Missense_Mutation p.S736L 0.15 unknown(0) TCGA-DR-A0ZM-01 1 152329907 152329907 C G FLG2 Missense_Mutation p.E119Q 0.20 unknown(0) TCGA-DR-A0ZM-01 1 152382129 152382129 C A CRNN Nonsense_Mutation p.E477* 0.16 TCGA-DR-A0ZM-01 1 152785089 152785089 C G LCE1B Missense_Mutation p.S56C 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-DR-A0ZM-01 1 152857023 152857023 G A SMCP Missense_Mutation p.C42Y 0.20 deleterious(0.01) possibly_damaging(0.588) TCGA-DR-A0ZM-01 1 153390597 153390597 G A S100A7A Missense_Mutation p.M13I 0.09 tolerated(0.44) benign(0.008) TCGA-DR-A0ZM-01 1 153742319 153742319 C G INTS3 Silent p.L796L 0.14 TCGA-DR-A0ZM-01 1 153784602 153784602 C G GATAD2B Missense_Mutation p.E476Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 1 153930904 153930904 C T CRTC2 Missense_Mutation p.E24K 0.14 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 1 153930977 153930977 C T CRTC2 5'UTR 0.15 TCGA-DR-A0ZM-01 1 153932440 153932440 C G SLC39A1 3'UTR 0.26 TCGA-DR-A0ZM-01 1 154000067 154000067 C G NUP210L Missense_Mutation p.E1288Q 0.46 deleterious(0) possibly_damaging(0.616) TCGA-DR-A0ZM-01 1 154187021 154187021 G C C1orf43 Silent p.L66L 0.09 TCGA-DR-A0ZM-01 1 154543731 154543731 C T CHRNB2 Silent p.F144F 0.16 TCGA-DR-A0ZM-01 1 154744507 154744507 G A KCNN3 Silent p.L464L 0.18 TCGA-DR-A0ZM-01 1 155028694 155028694 C G ADAM15 Missense_Mutation p.R295G 0.16 deleterious(0) probably_damaging(0.99) TCGA-DR-A0ZM-01 1 15546027 15546027 G A TMEM51 Missense_Mutation p.G184R 0.19 tolerated(0.27) benign(0.394) TCGA-DR-A0ZM-01 1 155695199 155695199 G C DAP3 Silent p.L99L 0.45 TCGA-DR-A0ZM-01 1 155735069 155735069 C T GON4L Missense_Mutation p.E1399K 0.16 tolerated_low_confidence(0.29) benign(0.003) TCGA-DR-A0ZM-01 1 155932738 155932738 G C ARHGEF2 Missense_Mutation p.L321V 0.17 tolerated(0.78) benign(0.057) TCGA-DR-A0ZM-01 1 155934786 155934786 G A ARHGEF2 Silent p.V239V 0.14 TCGA-DR-A0ZM-01 1 155988144 155988144 C T SSR2 Silent p.V57V 0.17 TCGA-DR-A0ZM-01 1 156020186 156020186 C T UBQLN4 Missense_Mutation p.D213N 0.11 tolerated(0.06) benign(0.348) TCGA-DR-A0ZM-01 1 156131286 156131286 C G SEMA4A Missense_Mutation p.I320M 0.11 deleterious(0.03) benign(0.436) TCGA-DR-A0ZM-01 1 156622655 156622655 G T BCAN Missense_Mutation p.R638L 0.13 tolerated(0.33) benign(0.004) TCGA-DR-A0ZM-01 1 157666171 157666171 C T FCRL3 Intron 0.21 TCGA-DR-A0ZM-01 1 157737271 157737271 G C FCRL2 Silent p.L304L 0.05 TCGA-DR-A0ZM-01 1 158063415 158063415 C T KIRREL Missense_Mutation p.R528C 0.15 deleterious(0) probably_damaging(0.98) TCGA-DR-A0ZM-01 1 158390018 158390018 C G OR10K2 Missense_Mutation p.L213F 0.10 tolerated(0.23) benign(0.424) TCGA-DR-A0ZM-01 1 158390317 158390317 G A OR10K2 Silent p.L114L 0.18 TCGA-DR-A0ZM-01 1 158549183 158549183 G A OR10X1 Silent p.F169F 0.20 TCGA-DR-A0ZM-01 1 158641920 158641920 C G SPTA1 Missense_Mutation p.E473Q 0.12 tolerated(0.14) benign(0.023) TCGA-DR-A0ZM-01 1 158669694 158669694 G A OR6K2 Missense_Mutation p.S250L 0.47 tolerated(1) benign(0.001) TCGA-DR-A0ZM-01 1 159175481 159175481 C G DARC Missense_Mutation p.F86L 0.10 tolerated(1) benign(0.009) TCGA-DR-A0ZM-01 1 159778006 159778006 G C FCRL6 Missense_Mutation p.E31Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 1 159842153 159842153 C T CCDC19 3'Flank 0.14 TCGA-DR-A0ZM-01 1 159888492 159888492 G A TAGLN2 3'UTR 0.17 TCGA-DR-A0ZM-01 1 160971084 160971084 C G F11R Missense_Mutation p.E42Q 0.16 deleterious(0.04) possibly_damaging(0.894) TCGA-DR-A0ZM-01 1 161018122 161018122 C T ARHGAP30 Missense_Mutation p.E897K 0.19 deleterious_low_confidence(0.02) benign(0.285) TCGA-DR-A0ZM-01 1 161018560 161018560 C T ARHGAP30 Missense_Mutation p.E751K 0.16 tolerated_low_confidence(0.3) benign(0.001) TCGA-DR-A0ZM-01 1 161133352 161133352 G A USP21 Missense_Mutation p.D353N 0.11 deleterious(0.01) benign(0.258) TCGA-DR-A0ZM-01 1 161142095 161142095 G A B4GALT3 Missense_Mutation p.S277F 0.15 tolerated(0.1) benign(0.319) TCGA-DR-A0ZM-01 1 161559450 161559450 G A RP11-25K21.6 Intron 0.20 TCGA-DR-A0ZM-01 1 161696447 161696447 G T FCRLB Intron 0.38 TCGA-DR-A0ZM-01 1 162353431 162353431 C G C1orf226 Silent p.L302L 0.14 TCGA-DR-A0ZM-01 1 162546701 162546701 C T UAP1 Nonsense_Mutation p.Q139* 0.12 TCGA-DR-A0ZM-01 1 162560263 162560263 C T UAP1 Silent p.F440F 0.17 TCGA-DR-A0ZM-01 1 162567621 162567621 C G UAP1 Missense_Mutation p.I466M 0.09 deleterious(0) probably_damaging(0.956) TCGA-DR-A0ZM-01 1 16257906 16257906 C G SPEN Nonsense_Mutation p.S1724* 0.24 TCGA-DR-A0ZM-01 1 16259072 16259072 G C SPEN Missense_Mutation p.E2113Q 0.20 benign(0.25) TCGA-DR-A0ZM-01 1 16261839 16261839 C G SPEN Nonsense_Mutation p.S3035* 0.14 TCGA-DR-A0ZM-01 1 16262059 16262059 C G SPEN Missense_Mutation p.I3108M 0.24 possibly_damaging(0.775) TCGA-DR-A0ZM-01 1 16475043 16475043 G C EPHA2 Missense_Mutation p.S218C 0.16 deleterious(0) benign(0.082) TCGA-DR-A0ZM-01 1 165173199 165173199 G C LMX1A Nonsense_Mutation p.S356* 0.15 TCGA-DR-A0ZM-01 1 165322470 165322470 C G LMX1A Missense_Mutation p.E36Q 0.08 tolerated(0.12) probably_damaging(0.956) TCGA-DR-A0ZM-01 1 165514074 165514074 C T LRRC52 Silent p.L181L 0.15 TCGA-DR-A0ZM-01 1 16577299 16577299 G T FBXO42 Missense_Mutation p.P674T 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 1 167097844 167097844 G C DUSP27 Nonstop_Mutation p.*1159Sext*43 0.19 TCGA-DR-A0ZM-01 1 16719720 16719720 C A SZRD1 Intron 0.29 TCGA-DR-A0ZM-01 1 167301706 167301706 G C POU2F1 Splice_Site p.X21_splice 0.24 TCGA-DR-A0ZM-01 1 167666535 167666535 G A RCSD1 Missense_Mutation p.G225E 0.40 tolerated(0.13) benign(0.063) TCGA-DR-A0ZM-01 1 167839635 167839635 C G ADCY10 Missense_Mutation p.E492D 0.07 deleterious(0) probably_damaging(0.979) TCGA-DR-A0ZM-01 1 168274320 168274320 C G TBX19 Missense_Mutation p.L268V 0.47 deleterious(0.01) possibly_damaging(0.81) TCGA-DR-A0ZM-01 1 16907343 16907343 C T NBPF1 Silent p.K496K 0.05 TCGA-DR-A0ZM-01 1 169792605 169792605 G C C1orf112 Missense_Mutation p.Q280H 0.14 deleterious(0.05) probably_damaging(0.993) TCGA-DR-A0ZM-01 1 172635076 172635076 C T FASLG Missense_Mutation p.H256Y 0.10 deleterious(0.04) possibly_damaging(0.53) TCGA-DR-A0ZM-01 1 17279857 17279857 G C CROCC Missense_Mutation p.E1023Q 0.14 probably_damaging(0.996) TCGA-DR-A0ZM-01 1 173010400 173010400 G C TNFSF18 3'UTR 0.18 TCGA-DR-A0ZM-01 1 17345426 17345426 C G SDHB Missense_Mutation p.E265Q 0.03 tolerated(0.09) benign(0.248) TCGA-DR-A0ZM-01 1 176525786 176525786 G C PAPPA2 Missense_Mutation p.D110H 0.18 tolerated_low_confidence(0.53) benign(0.011) TCGA-DR-A0ZM-01 1 176640121 176640121 G A PAPPA2 Silent p.V669V 0.03 TCGA-DR-A0ZM-01 1 176664908 176664908 G A PAPPA2 Missense_Mutation p.D887N 0.20 tolerated(0.1) probably_damaging(0.992) TCGA-DR-A0ZM-01 1 176671814 176671814 C T PAPPA2 Missense_Mutation p.S1103L 0.10 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 1 177133810 177133810 C T ASTN1 Translation_Start_Site p.M1? 0.55 deleterious_low_confidence(0) unknown(0) TCGA-DR-A0ZM-01 1 177250797 177250797 G C BRINP2 3'UTR 0.24 TCGA-DR-A0ZM-01 1 179820219 179820219 G A TOR1AIP2 Missense_Mutation p.S105L 0.12 tolerated_low_confidence(0.05) benign(0.027) TCGA-DR-A0ZM-01 1 180913468 180913468 C G KIAA1614 Intron 0.16 TCGA-DR-A0ZM-01 1 183387548 183387548 C G NMNAT2 5'UTR 0.15 TCGA-DR-A0ZM-01 1 184764121 184764121 G A FAM129A Missense_Mutation p.S926L 0.14 tolerated_low_confidence(0.12) benign(0.013) TCGA-DR-A0ZM-01 1 185984542 185984542 G A HMCN1 Missense_Mutation p.E1628K 0.14 probably_damaging(0.996) TCGA-DR-A0ZM-01 1 186302371 186302371 G C TPR Missense_Mutation p.Q1780E 0.22 benign(0.042) TCGA-DR-A0ZM-01 1 19203721 19203721 G C ALDH4A1 Missense_Mutation p.S389C 0.42 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 1 193121523 193121523 C G CDC73 Missense_Mutation p.F307L 0.40 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 1 19490262 19490262 C G UBR4 Missense_Mutation p.G1587A 0.09 possibly_damaging(0.719) TCGA-DR-A0ZM-01 1 19490290 19490290 C - UBR4 Frame_Shift_Del p.E1578Kfs*3 0.09 TCGA-DR-A0ZM-01 1 19578139 19578139 C G MRTO4 5'UTR 0.33 TCGA-DR-A0ZM-01 1 19597310 19597310 G C AKR7L 5'UTR 0.16 TCGA-DR-A0ZM-01 1 197026206 197026206 G C F13B Missense_Mutation p.L370V 0.15 deleterious(0.02) possibly_damaging(0.517) TCGA-DR-A0ZM-01 1 197396583 197396583 G C CRB1 Splice_Site p.X710_splice 0.20 TCGA-DR-A0ZM-01 1 200012937 200012937 G A NR5A2 Missense_Mutation p.E80K 0.18 tolerated(0.2) benign(0.03) TCGA-DR-A0ZM-01 1 201185842 201185842 G A IGFN1 Missense_Mutation p.E3186K 0.10 possibly_damaging(0.509) TCGA-DR-A0ZM-01 1 201282343 201282343 C G PKP1 Missense_Mutation p.S119C 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-DR-A0ZM-01 1 201840313 201840313 C G IPO9 Missense_Mutation p.L812V 0.10 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 1 205197695 205197695 G A TMCC2 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) benign(0.107) TCGA-DR-A0ZM-01 1 208383784 208383784 G A PLXNA2 Silent p.F404F 0.33 TCGA-DR-A0ZM-01 1 209969858 209969858 C T IRF6 Missense_Mutation p.D72N 0.19 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 1 210015687 210015687 C G DIEXF Silent p.L521L 0.15 TCGA-DR-A0ZM-01 1 210015736 210015736 C T DIEXF Nonsense_Mutation p.Q538* 0.14 TCGA-DR-A0ZM-01 1 212208785 212208785 G A INTS7 5'UTR 0.11 TCGA-DR-A0ZM-01 1 212798171 212798171 G C FAM71A 5'UTR 0.14 TCGA-DR-A0ZM-01 1 216256809 216256809 C G USH2A Missense_Mutation p.D1763H 0.41 probably_damaging(0.994) TCGA-DR-A0ZM-01 1 22159062 22159062 C T HSPG2 Silent p.G3711G 0.23 TCGA-DR-A0ZM-01 1 222898873 222898873 C G BROX Missense_Mutation p.Q186E 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-DR-A0ZM-01 1 223396808 223396808 C G SUSD4 Missense_Mutation p.Q409H 0.14 deleterious(0.01) possibly_damaging(0.646) TCGA-DR-A0ZM-01 1 223441956 223441956 C G SUSD4 Missense_Mutation p.E141D 0.14 tolerated(1) benign(0.001) TCGA-DR-A0ZM-01 1 226075320 226075320 C G LEFTY1 Missense_Mutation p.E172D 0.13 tolerated(0.11) benign(0.004) TCGA-DR-A0ZM-01 1 226822311 226822311 G C ITPKB 3'UTR 0.22 TCGA-DR-A0ZM-01 1 227288802 227288802 C T CDC42BPA Missense_Mutation p.E714K 0.09 deleterious(0) probably_damaging(0.982) TCGA-DR-A0ZM-01 1 228469878 228469878 C G OBSCN Silent p.L3243L 0.06 TCGA-DR-A0ZM-01 1 228596276 228596276 C G TRIM17 Missense_Mutation p.E354Q 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-DR-A0ZM-01 1 228646248 228646248 C G HIST3H2BB 3'UTR 0.13 TCGA-DR-A0ZM-01 1 230492790 230492790 C T PGBD5 Missense_Mutation p.M134I 0.12 deleterious(0.01) possibly_damaging(0.742) TCGA-DR-A0ZM-01 1 231472064 231472064 G C EXOC8 Missense_Mutation p.I476M 0.25 tolerated(0.08) benign(0.003) TCGA-DR-A0ZM-01 1 231472148 231472148 G C EXOC8 Missense_Mutation p.I448M 0.16 tolerated(0.23) benign(0.16) TCGA-DR-A0ZM-01 1 231830494 231830494 C T DISC1 Silent p.L330L 0.16 TCGA-DR-A0ZM-01 1 233394913 233394913 C A PCNXL2 Missense_Mutation p.G232V 0.13 tolerated_low_confidence(0.11) benign(0.006) TCGA-DR-A0ZM-01 1 235613457 235613457 C G B3GALNT2 3'UTR 0.22 TCGA-DR-A0ZM-01 1 235955247 235955247 G A LYST Missense_Mutation p.S1432L 0.13 tolerated(0.06) possibly_damaging(0.878) TCGA-DR-A0ZM-01 1 236646671 236646671 C G EDARADD 3'Flank 0.04 TCGA-DR-A0ZM-01 1 237754039 237754039 C T RYR2 Missense_Mutation p.R1303C 0.13 benign(0.41) TCGA-DR-A0ZM-01 1 237872193 237872193 C T RYR2 Nonsense_Mutation p.Q3313* 0.13 TCGA-DR-A0ZM-01 1 238048827 238048827 G C ZP4 Missense_Mutation p.L342V 0.20 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 1 238053866 238053866 C T ZP4 Missense_Mutation p.E24K 0.36 tolerated(0.34) benign(0.006) TCGA-DR-A0ZM-01 1 23953590 23953590 C G MDS2 5'Flank 0.35 TCGA-DR-A0ZM-01 1 241714342 241714342 C T KMO Nonsense_Mutation p.Q104* 0.12 TCGA-DR-A0ZM-01 1 243708851 243708851 G C AKT3 Missense_Mutation p.F404L 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-DR-A0ZM-01 1 2445807 2445807 C T PANK4 Silent p.L491L 0.12 TCGA-DR-A0ZM-01 1 244735747 244735747 C T C1orf101 Silent p.F541F 0.15 TCGA-DR-A0ZM-01 1 246704309 246704309 C G TFB2M 3'UTR 0.09 TCGA-DR-A0ZM-01 1 247024261 247024261 C G AHCTF1 Missense_Mutation p.D1367H 0.11 deleterious(0.01) possibly_damaging(0.853) TCGA-DR-A0ZM-01 1 247063499 247063499 C G AHCTF1 Missense_Mutation p.E443Q 0.14 deleterious(0) benign(0.079) TCGA-DR-A0ZM-01 1 247473064 247473064 C G ZNF496 Missense_Mutation p.E277Q 0.09 deleterious(0.02) possibly_damaging(0.548) TCGA-DR-A0ZM-01 1 248616299 248616299 C G OR2T2 Silent p.L67L 0.15 TCGA-DR-A0ZM-01 1 24861651 24861651 G A RCAN3 Missense_Mutation p.E204K 0.27 tolerated(0.07) possibly_damaging(0.863) TCGA-DR-A0ZM-01 1 248685098 248685098 C G OR2G6 Missense_Mutation p.L51V 0.11 tolerated(0.08) benign(0.014) TCGA-DR-A0ZM-01 1 2524328 2524328 C T MMEL1 Missense_Mutation p.E649K 0.25 tolerated(0.39) benign(0.034) TCGA-DR-A0ZM-01 1 26603650 26603650 G C CEP85 Missense_Mutation p.D719H 0.25 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 1 26752837 26752837 C G LIN28A Nonsense_Mutation p.S173* 0.16 TCGA-DR-A0ZM-01 1 27440753 27440753 G C SLC9A1 Nonsense_Mutation p.S126* 0.24 TCGA-DR-A0ZM-01 1 27744783 27744783 G C WASF2 Missense_Mutation p.L136V 0.05 deleterious(0.01) unknown(0) TCGA-DR-A0ZM-01 1 28169737 28169737 C G PPP1R8 Missense_Mutation p.S178C 0.19 deleterious(0) probably_damaging(0.91) TCGA-DR-A0ZM-01 1 29342242 29342242 C G EPB41 Missense_Mutation p.P290A 0.13 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 1 32696563 32696563 G C EIF3I Missense_Mutation p.R280T 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-DR-A0ZM-01 1 33147407 33147407 G A SYNC 3'UTR 0.24 TCGA-DR-A0ZM-01 1 3427462 3427462 G A MEGF6 Silent p.V373V 0.20 TCGA-DR-A0ZM-01 1 36297506 36297506 G A AGO4 Missense_Mutation p.D364N 0.25 deleterious(0.01) possibly_damaging(0.805) TCGA-DR-A0ZM-01 1 36550776 36550776 G A TEKT2 Missense_Mutation p.E57K 0.16 deleterious(0.03) possibly_damaging(0.649) TCGA-DR-A0ZM-01 1 3745850 3745850 C G CEP104 Missense_Mutation p.E711Q 0.21 tolerated(0.14) benign(0.127) TCGA-DR-A0ZM-01 1 3782246 3782246 C G DFFB Intron 0.14 TCGA-DR-A0ZM-01 1 38005984 38005984 C G SNIP1 Missense_Mutation p.E234Q 0.15 deleterious(0.02) benign(0.253) TCGA-DR-A0ZM-01 1 38019729 38019729 G C SNIP1 Silent p.L34L 0.24 TCGA-DR-A0ZM-01 1 43886618 43886618 C G SZT2 Missense_Mutation p.T487S 0.13 tolerated(0.08) possibly_damaging(0.78) TCGA-DR-A0ZM-01 1 44424532 44424532 A C IPO13 Missense_Mutation p.K667Q 0.14 tolerated(0.35) benign(0.005) TCGA-DR-A0ZM-01 1 46073526 46073526 G C NASP Missense_Mutation p.E315Q 0.28 deleterious_low_confidence(0.01) benign(0.034) TCGA-DR-A0ZM-01 1 47059806 47059806 G C MKNK1 Missense_Mutation p.Q5E 0.21 tolerated_low_confidence(0.12) benign(0) TCGA-DR-A0ZM-01 1 55277499 55277499 G A C1orf177 Silent p.E171E 0.19 TCGA-DR-A0ZM-01 1 57480998 57480998 C T DAB1 Silent p.P334P 0.21 TCGA-DR-A0ZM-01 1 6214952 6214952 G C CHD5 Silent p.L171L 0.12 TCGA-DR-A0ZM-01 1 63789491 63789491 G C FOXD3 Missense_Mutation p.Q254H 0.28 tolerated(0.26) benign(0.216) TCGA-DR-A0ZM-01 1 6511783 6511783 C T ESPN Missense_Mutation p.S679L 0.37 deleterious(0.01) benign(0.049) TCGA-DR-A0ZM-01 1 65332606 65332606 G A JAK1 Silent p.L311L 0.26 TCGA-DR-A0ZM-01 1 6688663 6688663 G A THAP3 Missense_Mutation p.R60Q 0.26 tolerated(0.19) benign(0.249) TCGA-DR-A0ZM-01 1 67263631 67263631 G A INSL5 3'UTR 0.16 TCGA-DR-A0ZM-01 1 67423853 67423853 G A MIER1 Missense_Mutation p.D151N 0.13 tolerated(0.47) benign(0.131) TCGA-DR-A0ZM-01 1 67861953 67861953 G C IL12RB2 3'UTR 0.25 TCGA-DR-A0ZM-01 1 68512353 68512353 C G DIRAS3 Missense_Mutation p.E210Q 0.16 tolerated(0.74) benign(0.004) TCGA-DR-A0ZM-01 1 71546620 71546620 C T ZRANB2 Intron 0.18 TCGA-DR-A0ZM-01 1 7895914 7895914 G C PER3 Missense_Mutation p.E1094Q 0.25 tolerated(0.07) probably_damaging(0.982) TCGA-DR-A0ZM-01 1 79120726 79120726 G C IFI44 Missense_Mutation p.L174F 0.21 deleterious(0.01) possibly_damaging(0.606) TCGA-DR-A0ZM-01 1 8419925 8419925 C T RERE Missense_Mutation p.E1173K 0.26 unknown(0) TCGA-DR-A0ZM-01 1 8426005 8426005 C T RERE Nonsense_Mutation p.W438* 0.19 TCGA-DR-A0ZM-01 1 861390 861390 G C SAMD11 Silent p.P23P 0.06 TCGA-DR-A0ZM-01 1 87043590 87043590 G C CLCA4 Missense_Mutation p.D653H 0.20 deleterious(0) probably_damaging(0.993) TCGA-DR-A0ZM-01 1 89408752 89408752 G A CCBL2 Missense_Mutation p.S413L 0.18 deleterious(0) probably_damaging(0.911) TCGA-DR-A0ZM-01 20 10639291 10639291 G A JAG1 Silent p.N173N 0.21 TCGA-DR-A0ZM-01 20 13280110 13280110 G A ISM1 3'UTR 0.21 TCGA-DR-A0ZM-01 20 16354918 16354918 G A KIF16B Missense_Mutation p.P1112S 0.16 deleterious_low_confidence(0.04) benign(0.329) TCGA-DR-A0ZM-01 20 1902277 1902277 C T SIRPA Nonsense_Mutation p.Q225* 0.19 TCGA-DR-A0ZM-01 20 20024178 20024178 G C CRNKL1 Missense_Mutation p.I471M 0.21 deleterious(0.02) benign(0.041) TCGA-DR-A0ZM-01 20 25484703 25484703 C G NINL Missense_Mutation p.G249A 0.04 deleterious(0) possibly_damaging(0.855) TCGA-DR-A0ZM-01 20 2597898 2597898 C G TMC2 Silent p.L707L 0.21 TCGA-DR-A0ZM-01 20 2621973 2621973 G T TMC2 Missense_Mutation p.K899N 0.18 deleterious_low_confidence(0.04) benign(0.006) TCGA-DR-A0ZM-01 20 30385276 30385276 C G TPX2 Missense_Mutation p.Q635E 0.24 deleterious(0) probably_damaging(0.951) TCGA-DR-A0ZM-01 20 307589 307589 C T SOX12 3'UTR 0.29 TCGA-DR-A0ZM-01 20 31025198 31025198 G C ASXL1 3'UTR 0.24 TCGA-DR-A0ZM-01 20 32256027 32256027 G A ACTL10 Missense_Mutation p.D242N 0.25 tolerated(0.06) benign(0.09) TCGA-DR-A0ZM-01 20 33147542 33147542 G A MAP1LC3A Missense_Mutation p.R73H 0.22 deleterious(0.01) possibly_damaging(0.818) TCGA-DR-A0ZM-01 20 33500927 33500927 C G ACSS2 Missense_Mutation p.Q135E 0.15 tolerated(0.26) benign(0.007) TCGA-DR-A0ZM-01 20 33706307 33706307 G C EDEM2 Intron 0.20 TCGA-DR-A0ZM-01 20 33706316 33706316 G C EDEM2 Intron 0.20 TCGA-DR-A0ZM-01 20 34022041 34022041 C T GDF5 Missense_Mutation p.R391Q 0.26 tolerated(0.1) benign(0.114) TCGA-DR-A0ZM-01 20 34287611 34287611 C T ROMO1 Silent p.V19V 0.24 TCGA-DR-A0ZM-01 20 34572654 34572654 G A CNBD2 Missense_Mutation p.D224N 0.20 tolerated(0.15) benign(0.132) TCGA-DR-A0ZM-01 20 35060247 35060247 G A DLGAP4 Missense_Mutation p.E43K 0.25 tolerated(0.73) possibly_damaging(0.589) TCGA-DR-A0ZM-01 20 36012550 36012550 C T SRC Intron 0.29 TCGA-DR-A0ZM-01 20 36841441 36841441 C G KIAA1755 3'UTR 0.24 TCGA-DR-A0ZM-01 20 3686628 3686628 C T SIGLEC1 Missense_Mutation p.D157N 0.20 tolerated(0.87) benign(0.006) TCGA-DR-A0ZM-01 20 39794458 39794458 C G PLCG1 Silent p.L597L 0.16 TCGA-DR-A0ZM-01 20 40033628 40033628 C T CHD6 Missense_Mutation p.E2585K 0.20 tolerated(0.05) benign(0.297) TCGA-DR-A0ZM-01 20 43438835 43438835 G A RIMS4 Silent p.S26S 0.50 TCGA-DR-A0ZM-01 20 43995671 43995671 C T SYS1 Silent p.L129L 0.15 TCGA-DR-A0ZM-01 20 44470020 44470020 G A SNX21 3'UTR 0.20 TCGA-DR-A0ZM-01 20 44470616 44470616 G A ACOT8 Intron 0.11 TCGA-DR-A0ZM-01 20 44980847 44980847 G C SLC35C2 Missense_Mutation p.S227C 0.19 deleterious(0) probably_damaging(0.95) TCGA-DR-A0ZM-01 20 45131502 45131502 C T ZNF334 Missense_Mutation p.R159K 0.18 tolerated(1) benign(0) TCGA-DR-A0ZM-01 20 47649562 47649562 C G ARFGEF2 Missense_Mutation p.F1728L 0.17 tolerated(0.13) benign(0.214) TCGA-DR-A0ZM-01 20 47649766 47649766 C G ARFGEF2 3'UTR 0.22 TCGA-DR-A0ZM-01 20 47691354 47691354 G C CSE1L Missense_Mutation p.E367Q 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-DR-A0ZM-01 20 47870271 47870271 C G ZNFX1 Missense_Mutation p.E1013Q 0.27 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 20 50234087 50234087 C T ATP9A Missense_Mutation p.G786E 0.11 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 20 51872272 51872272 G C TSHZ2 Missense_Mutation p.E759Q 0.19 tolerated(0.44) benign(0.389) TCGA-DR-A0ZM-01 20 53226988 53226988 C G DOK5 Missense_Mutation p.Q221E 0.21 deleterious(0.04) benign(0.028) TCGA-DR-A0ZM-01 20 54945266 54945266 G A AURKA Missense_Mutation p.S387L 0.20 deleterious(0.02) possibly_damaging(0.653) TCGA-DR-A0ZM-01 20 55108465 55108465 C T FAM209B Missense_Mutation p.S23F 0.26 tolerated(0.19) probably_damaging(0.991) TCGA-DR-A0ZM-01 20 57570797 57570797 C T CTSZ Silent p.L273L 0.12 TCGA-DR-A0ZM-01 20 57768813 57768813 C T ZNF831 Silent p.P913P 0.21 TCGA-DR-A0ZM-01 20 5974253 5974253 C G MCM8 Missense_Mutation p.S781C 0.26 deleterious(0) probably_damaging(0.91) TCGA-DR-A0ZM-01 20 60575694 60575694 G C TAF4 Missense_Mutation p.S857C 0.17 probably_damaging(0.997) TCGA-DR-A0ZM-01 20 60881738 60881738 G A ADRM1 Missense_Mutation p.M163I 0.23 deleterious(0) probably_damaging(0.923) TCGA-DR-A0ZM-01 20 61511608 61511608 C G DIDO1 Silent p.L1900L 0.04 TCGA-DR-A0ZM-01 20 62071057 62071057 G A KCNQ2 Missense_Mutation p.T274M 0.23 deleterious(0) probably_damaging(0.988) TCGA-DR-A0ZM-01 20 62198468 62198468 G A HELZ2 Missense_Mutation p.A748V 0.22 deleterious(0.05) benign(0.075) TCGA-DR-A0ZM-01 20 62598313 62598313 C G ZNF512B Silent p.S103S 0.05 TCGA-DR-A0ZM-01 20 9389808 9389808 C A PLCB4 Nonsense_Mutation p.S648* 0.21 TCGA-DR-A0ZM-01 21 10933862 10933862 T A TPTE Missense_Mutation p.K339N 0.10 deleterious(0.01) possibly_damaging(0.729) TCGA-DR-A0ZM-01 21 22707864 22707864 G C NCAM2 Missense_Mutation p.L259F 0.20 tolerated(0.78) benign(0.026) TCGA-DR-A0ZM-01 21 27102096 27102096 G A ATP5J Nonsense_Mutation p.Q12* 0.26 TCGA-DR-A0ZM-01 21 31045341 31045341 C G GRIK1 Missense_Mutation p.D230H 0.18 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 21 34635482 34635482 G C IFNAR2 Missense_Mutation p.E409Q 0.04 deleterious(0.04) probably_damaging(0.968) TCGA-DR-A0ZM-01 21 34925697 34925697 C T SON Missense_Mutation p.S1387L 0.38 benign(0.32) TCGA-DR-A0ZM-01 21 35147123 35147123 G A ITSN1 Missense_Mutation p.E466K 0.23 deleterious(0) probably_damaging(0.987) TCGA-DR-A0ZM-01 21 37642322 37642322 G C DOPEY2 Missense_Mutation p.Q1833H 0.19 tolerated(0.43) probably_damaging(0.999) TCGA-DR-A0ZM-01 21 38884574 38884574 C G DYRK1A Missense_Mutation p.Q678E 0.22 tolerated_low_confidence(0.12) benign(0.047) TCGA-DR-A0ZM-01 21 39672416 39672416 C G KCNJ15 3'UTR 0.21 TCGA-DR-A0ZM-01 21 40667817 40667817 C G BRWD1 Missense_Mutation p.R154P 0.19 tolerated(0.06) probably_damaging(0.986) TCGA-DR-A0ZM-01 21 43735589 43735589 G A TFF3 5'UTR 0.21 TCGA-DR-A0ZM-01 21 44430227 44430227 G C PKNOX1 Missense_Mutation p.E82Q 0.19 deleterious(0.01) benign(0.261) TCGA-DR-A0ZM-01 21 44430251 44430251 G A PKNOX1 Missense_Mutation p.D90N 0.16 tolerated(0.49) benign(0.018) TCGA-DR-A0ZM-01 21 44430276 44430276 G A PKNOX1 Missense_Mutation p.R98K 0.12 tolerated(0.29) probably_damaging(0.97) TCGA-DR-A0ZM-01 21 45736150 45736150 G A PFKL Silent p.L257L 0.18 TCGA-DR-A0ZM-01 21 45929254 45929254 C T TSPEAR Missense_Mutation p.D528N 0.14 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 21 47639401 47639401 G A LSS Silent p.F212F 0.12 TCGA-DR-A0ZM-01 22 18021987 18021987 C G CECR2 Missense_Mutation p.Q698E 0.27 tolerated(0.09) benign(0.372) TCGA-DR-A0ZM-01 22 19349384 19349384 C G HIRA Missense_Mutation p.E616Q 0.19 tolerated(0.16) benign(0.166) TCGA-DR-A0ZM-01 22 20394631 20394631 G A PI4KAP1 RNA 0.35 TCGA-DR-A0ZM-01 22 21333933 21333933 G A AIFM3 Missense_Mutation p.D532N 0.25 tolerated(0.08) probably_damaging(0.988) TCGA-DR-A0ZM-01 22 23603578 23603578 C T BCR Nonsense_Mutation p.Q535* 0.15 TCGA-DR-A0ZM-01 22 24384148 24384148 G C GSTT1 Missense_Mutation p.F28L 0.31 deleterious(0.03) probably_damaging(0.993) TCGA-DR-A0ZM-01 22 25750768 25750768 G A LRP5L Silent p.V150V 0.29 TCGA-DR-A0ZM-01 22 29921835 29921835 G A THOC5 Silent p.I389I 0.26 TCGA-DR-A0ZM-01 22 30077525 30077525 C G NF2 Missense_Mutation p.L558V 0.20 tolerated(0.08) possibly_damaging(0.73) TCGA-DR-A0ZM-01 22 30722721 30722721 G A TBC1D10A Silent p.F50F 0.15 TCGA-DR-A0ZM-01 22 31673134 31673134 C T LIMK2 3'UTR 0.16 TCGA-DR-A0ZM-01 22 32009453 32009453 C T SFI1 Silent p.L893L 0.16 TCGA-DR-A0ZM-01 22 32754152 32754152 G C RFPL3 Missense_Mutation p.A32P 0.26 tolerated(0.06) benign(0.199) TCGA-DR-A0ZM-01 22 35782729 35782729 G C HMOX1 Missense_Mutation p.E66Q 0.15 deleterious(0) probably_damaging(0.972) TCGA-DR-A0ZM-01 22 36684429 36684429 C A MYH9 Nonsense_Mutation p.E1601* 0.27 TCGA-DR-A0ZM-01 22 36710324 36710324 C G MYH9 Missense_Mutation p.E474Q 0.22 benign(0.235) TCGA-DR-A0ZM-01 22 36889851 36889851 C T FOXRED2 Splice_Site p.X542_splice 0.31 TCGA-DR-A0ZM-01 22 37268366 37268366 C G NCF4 Intron 0.20 TCGA-DR-A0ZM-01 22 37395884 37395884 G A TEX33 Nonsense_Mutation p.R211* 0.19 TCGA-DR-A0ZM-01 22 38323718 38323718 C T MICALL1 Missense_Mutation p.S589L 0.29 tolerated(0.24) benign(0) TCGA-DR-A0ZM-01 22 38469791 38469791 G C PICK1 Silent p.L265L 0.24 TCGA-DR-A0ZM-01 22 39381838 39381838 C T APOBEC3B Missense_Mutation p.H66Y 0.19 deleterious(0.03) probably_damaging(0.932) TCGA-DR-A0ZM-01 22 40043865 40043865 C T CACNA1I Missense_Mutation p.L501F 0.21 tolerated(0.73) unknown(0) TCGA-DR-A0ZM-01 22 41226912 41226912 C G ST13 Missense_Mutation p.E244Q 0.26 deleterious(0.03) probably_damaging(0.995) TCGA-DR-A0ZM-01 22 41605531 41605531 C T L3MBTL2 Intron 0.36 TCGA-DR-A0ZM-01 22 41832381 41832381 G A TOB2 Silent p.L323L 0.28 TCGA-DR-A0ZM-01 22 42606167 42606167 C G TCF20 Silent p.R1715R 0.23 TCGA-DR-A0ZM-01 22 43289475 43289475 G T PACSIN2 Missense_Mutation p.L69I 0.21 tolerated(0.07) probably_damaging(0.923) TCGA-DR-A0ZM-01 22 43525228 43525228 G A BIK Missense_Mutation p.E134K 0.23 tolerated(0.83) benign(0.001) TCGA-DR-A0ZM-01 22 44112776 44112776 G C EFCAB6 Missense_Mutation p.I278M 0.15 tolerated(0.34) benign(0.01) TCGA-DR-A0ZM-01 22 44319878 44319878 G A PNPLA3 Silent p.L29L 0.21 TCGA-DR-A0ZM-01 22 46733701 46733701 G A TRMU Missense_Mutation p.M36I 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-DR-A0ZM-01 22 50728569 50728569 C T PLXNB2 Missense_Mutation p.E149K 0.13 tolerated(0.06) probably_damaging(0.984) TCGA-DR-A0ZM-01 22 50943260 50943260 C A LMF2 Nonsense_Mutation p.E470* 0.16 TCGA-DR-A0ZM-01 22 50957693 50957693 G C NCAPH2 Missense_Mutation p.E269Q 0.37 tolerated(0.43) possibly_damaging(0.747) TCGA-DR-A0ZM-01 22 51020270 51020270 C G CHKB Missense_Mutation p.E119Q 0.17 deleterious(0.02) probably_damaging(0.983) TCGA-DR-A0ZM-01 2 103149013 103149013 G T SLC9A4 Missense_Mutation p.D755Y 0.33 deleterious(0.02) possibly_damaging(0.498) TCGA-DR-A0ZM-01 2 105954032 105954032 C G C2orf49 5'UTR 0.26 TCGA-DR-A0ZM-01 2 106782514 106782514 C T UXS1 Missense_Mutation p.M40I 0.09 deleterious_low_confidence(0.01) benign(0.058) TCGA-DR-A0ZM-01 2 112608391 112608391 G C ANAPC1 Missense_Mutation p.P538A 0.21 tolerated(0.17) benign(0.008) TCGA-DR-A0ZM-01 2 113147114 113147114 G A RGPD8 Silent p.F1136F 0.12 TCGA-DR-A0ZM-01 2 11341440 11341440 C T ROCK2 Missense_Mutation p.E907K 0.17 deleterious(0) possibly_damaging(0.802) TCGA-DR-A0ZM-01 2 113416402 113416402 G A SLC20A1 Missense_Mutation p.R260Q 0.18 tolerated(0.58) benign(0.066) TCGA-DR-A0ZM-01 2 113676372 113676372 G A IL37 Missense_Mutation p.E215K 0.22 tolerated(0.11) benign(0.091) TCGA-DR-A0ZM-01 2 11964764 11964764 G A LPIN1 Silent p.V925V 0.28 TCGA-DR-A0ZM-01 2 119731963 119731963 G A MARCO Missense_Mutation p.G172E 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-DR-A0ZM-01 2 122176241 122176241 C G CLASP1 Missense_Mutation p.E759D 0.18 tolerated(0.08) probably_damaging(0.986) TCGA-DR-A0ZM-01 2 125281973 125281973 C A CNTNAP5 Missense_Mutation p.P473Q 0.19 tolerated(0.07) possibly_damaging(0.88) TCGA-DR-A0ZM-01 2 131487174 131487174 C T GPR148 Silent p.V150V 0.27 TCGA-DR-A0ZM-01 2 131798860 131798860 G A ARHGEF4 Missense_Mutation p.E388K 0.17 deleterious(0) probably_damaging(0.954) TCGA-DR-A0ZM-01 2 145147260 145147260 C T ZEB2 Missense_Mutation p.E1135K 0.20 tolerated(0.81) benign(0) TCGA-DR-A0ZM-01 2 148710052 148710052 C T ORC4 Missense_Mutation p.E160K 0.25 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 2 158114545 158114545 C G GALNT5 5'UTR 0.28 TCGA-DR-A0ZM-01 2 160086183 160086183 G C TANC1 Missense_Mutation p.E1416Q 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-DR-A0ZM-01 2 160086255 160086255 G A TANC1 Missense_Mutation p.E1440K 0.22 deleterious_low_confidence(0.02) benign(0.043) TCGA-DR-A0ZM-01 2 160193581 160193581 C G BAZ2B Missense_Mutation p.E1890Q 0.23 probably_damaging(0.954) TCGA-DR-A0ZM-01 2 1653335 1653335 C T PXDN Silent p.Q739Q 0.25 TCGA-DR-A0ZM-01 2 165578671 165578671 G A COBLL1 Nonsense_Mutation p.Q304* 0.24 TCGA-DR-A0ZM-01 2 1677580 1677580 C T PXDN Missense_Mutation p.E285K 0.21 tolerated(0.07) benign(0.081) TCGA-DR-A0ZM-01 2 168108178 168108178 G A XIRP2 Missense_Mutation p.E3426K 0.19 possibly_damaging(0.779) TCGA-DR-A0ZM-01 2 170063720 170063720 C T LRP2 Silent p.L2170L 0.19 TCGA-DR-A0ZM-01 2 170396618 170396618 G A FASTKD1 Silent p.L630L 0.09 TCGA-DR-A0ZM-01 2 170396650 170396650 G C FASTKD1 Missense_Mutation p.S619C 0.15 tolerated(0.17) probably_damaging(0.974) TCGA-DR-A0ZM-01 2 170488307 170488307 G C PPIG Missense_Mutation p.E265Q 0.21 tolerated(0.06) unknown(0) TCGA-DR-A0ZM-01 2 174086208 174086208 G A MLTK Intron 0.26 TCGA-DR-A0ZM-01 2 175094174 175094174 G C OLA1 Missense_Mutation p.S36C 0.14 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 2 178095787 178095787 C G NFE2L2 Missense_Mutation p.R515T 0.25 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 2 178481445 178481445 C A TTC30A Missense_Mutation p.G662V 0.23 deleterious(0.01) possibly_damaging(0.553) TCGA-DR-A0ZM-01 2 179396631 179396631 C G TTN Missense_Mutation p.R34904T 0.26 TCGA-DR-A0ZM-01 2 179431886 179431886 C G TTN Missense_Mutation p.E26325Q 0.04 TCGA-DR-A0ZM-01 2 179437859 179437859 C G TTN Missense_Mutation p.D24334H 0.25 TCGA-DR-A0ZM-01 2 179449409 179449409 C T TTN Silent p.A21653A 0.22 TCGA-DR-A0ZM-01 2 179501443 179501443 C T TTN Missense_Mutation p.E13671K 0.22 TCGA-DR-A0ZM-01 2 187529285 187529285 C G ITGAV Missense_Mutation p.Q664E 0.22 tolerated(1) benign(0.155) TCGA-DR-A0ZM-01 2 187542023 187542023 C T ITGAV 3'UTR 0.28 TCGA-DR-A0ZM-01 2 187693420 187693420 G A ZSWIM2 Missense_Mutation p.S398L 0.29 tolerated(0.16) benign(0.001) TCGA-DR-A0ZM-01 2 188210866 188210866 G C CALCRL 3'UTR 0.24 TCGA-DR-A0ZM-01 2 190328666 190328666 G C WDR75 Missense_Mutation p.Q364H 0.25 tolerated(0.41) benign(0.005) TCGA-DR-A0ZM-01 2 190445311 190445311 C T SLC40A1 5'UTR 0.20 TCGA-DR-A0ZM-01 2 191233880 191233880 G A INPP1 Missense_Mutation p.G173E 0.24 deleterious(0.03) probably_damaging(1) TCGA-DR-A0ZM-01 2 191769883 191769883 G A GLS Silent p.L323L 0.23 TCGA-DR-A0ZM-01 2 192701229 192701229 C G SDPR Missense_Mutation p.R233T 0.29 deleterious(0) possibly_damaging(0.864) TCGA-DR-A0ZM-01 2 198949706 198949706 C G PLCL1 Missense_Mutation p.L489V 0.27 tolerated(0.06) possibly_damaging(0.714) TCGA-DR-A0ZM-01 2 200820176 200820176 G A TYW5 Silent p.L6L 0.24 TCGA-DR-A0ZM-01 2 200820965 200820965 G A C2orf47 Silent p.A148A 0.27 TCGA-DR-A0ZM-01 2 201438514 201438514 G C SGOL2 Missense_Mutation p.D1149H 0.23 tolerated(0.06) possibly_damaging(0.896) TCGA-DR-A0ZM-01 2 203084794 203084794 C G SUMO1 Missense_Mutation p.K16N 0.04 tolerated(0.09) possibly_damaging(0.695) TCGA-DR-A0ZM-01 2 203147126 203147126 G A NOP58 Silent p.L76L 0.29 TCGA-DR-A0ZM-01 2 203826051 203826051 G C CARF Missense_Mutation p.W245S 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-DR-A0ZM-01 2 204075737 204075737 C G NBEAL1 Missense_Mutation p.I2585M 0.36 tolerated(0.2) benign(0.035) TCGA-DR-A0ZM-01 2 204131338 204131338 G C CYP20A1 Missense_Mutation p.Q178H 0.20 deleterious(0.04) benign(0.02) TCGA-DR-A0ZM-01 2 209007482 209007482 C T CRYGB Silent p.E136E 0.23 TCGA-DR-A0ZM-01 2 210594968 210594968 G A MAP2 Silent p.E1777E 0.18 TCGA-DR-A0ZM-01 2 21228336 21228336 G C APOB Missense_Mutation p.Q3802E 0.23 benign(0.001) TCGA-DR-A0ZM-01 2 21241867 21241867 C T APOB Missense_Mutation p.E1040K 0.30 probably_damaging(0.996) TCGA-DR-A0ZM-01 2 21246522 21246522 G C APOB Missense_Mutation p.L827V 0.19 probably_damaging(0.998) TCGA-DR-A0ZM-01 2 216964767 216964767 G A TMEM169 Silent p.L132L 0.28 TCGA-DR-A0ZM-01 2 218686477 218686477 G A TNS1 Silent p.I1082I 0.29 TCGA-DR-A0ZM-01 2 219142177 219142177 C G TMBIM1 Splice_Site p.X184_splice 0.23 TCGA-DR-A0ZM-01 2 219566632 219566632 C G STK36 Missense_Mutation p.S1283C 0.26 deleterious(0.02) possibly_damaging(0.503) TCGA-DR-A0ZM-01 2 219868909 219868909 C G CCDC108 Missense_Mutation p.E1774Q 0.23 tolerated(0.25) unknown(0) TCGA-DR-A0ZM-01 2 220099583 220099583 G C ANKZF1 Missense_Mutation p.E414Q 0.05 tolerated(0.19) benign(0.057) TCGA-DR-A0ZM-01 2 220115052 220115052 G A TUBA4A 3'UTR 0.24 TCGA-DR-A0ZM-01 2 220150677 220150677 C T DNAJB2 3'UTR 0.21 TCGA-DR-A0ZM-01 2 220370347 220370347 C T GMPPA Intron 0.20 TCGA-DR-A0ZM-01 2 220498102 220498102 G C SLC4A3 Missense_Mutation p.D489H 0.20 deleterious(0.05) probably_damaging(0.975) TCGA-DR-A0ZM-01 2 222294716 222294716 G A EPHA4 Silent p.N884N 0.19 TCGA-DR-A0ZM-01 2 225751178 225751178 C T DOCK10 Missense_Mutation p.E163K 0.09 deleterious(0) benign(0.41) TCGA-DR-A0ZM-01 2 228121064 228121064 C G COL4A3 Silent p.V313V 0.31 TCGA-DR-A0ZM-01 2 230910660 230910660 G T SLC16A14 Silent p.L394L 0.21 TCGA-DR-A0ZM-01 2 233651973 233651973 G A GIGYF2 Missense_Mutation p.E238K 0.22 possibly_damaging(0.9) TCGA-DR-A0ZM-01 2 234255520 234255520 G A SAG Missense_Mutation p.E394K 0.12 tolerated(0.29) benign(0.008) TCGA-DR-A0ZM-01 2 234763116 234763116 C G HJURP Missense_Mutation p.E11Q 0.24 tolerated(0.2) probably_damaging(0.962) TCGA-DR-A0ZM-01 2 234845985 234845985 C T TRPM8 Intron 0.20 TCGA-DR-A0ZM-01 2 238267869 238267869 C G COL6A3 Missense_Mutation p.D2112H 0.05 probably_damaging(0.971) TCGA-DR-A0ZM-01 2 238419644 238419644 C T MLPH Silent p.I115I 0.21 TCGA-DR-A0ZM-01 2 241398601 241398601 C T GPC1 Silent p.F107F 0.15 TCGA-DR-A0ZM-01 2 241570131 241570131 C G GPR35 Missense_Mutation p.I285M 0.17 tolerated(0.08) benign(0.117) TCGA-DR-A0ZM-01 2 242186507 242186507 C G HDLBP Missense_Mutation p.K594N 0.20 deleterious(0) probably_damaging(0.968) TCGA-DR-A0ZM-01 2 242430942 242430942 G C FARP2 Missense_Mutation p.E879Q 0.25 tolerated(0.07) probably_damaging(0.954) TCGA-DR-A0ZM-01 2 24471720 24471720 G A ITSN2 Missense_Mutation p.S1051L 0.12 tolerated(0.96) unknown(0) TCGA-DR-A0ZM-01 2 25061765 25061765 C G ADCY3 Intron 0.23 TCGA-DR-A0ZM-01 2 25505330 25505330 C T DNMT3A Missense_Mutation p.R143Q 0.26 tolerated(0.35) benign(0) TCGA-DR-A0ZM-01 2 26667594 26667594 C G DRC1 Missense_Mutation p.L392V 0.14 tolerated(0.67) benign(0.005) TCGA-DR-A0ZM-01 2 27361043 27361043 G C C2orf53 Missense_Mutation p.S52C 0.30 tolerated(0.09) benign(0.001) TCGA-DR-A0ZM-01 2 27886730 27886730 G C SLC4A1AP Missense_Mutation p.K37N 0.18 tolerated_low_confidence(0.29) benign(0.002) TCGA-DR-A0ZM-01 2 29011673 29011673 C G PPP1CB Missense_Mutation p.Q248E 0.22 deleterious_low_confidence(0.04) benign(0.031) TCGA-DR-A0ZM-01 2 29063288 29063288 C G SPDYA Nonsense_Mutation p.S268* 0.19 TCGA-DR-A0ZM-01 2 31152319 31152319 C G GALNT14 Missense_Mutation p.E370Q 0.23 deleterious(0.03) possibly_damaging(0.746) TCGA-DR-A0ZM-01 2 36986229 36986229 C G VIT Intron 0.24 TCGA-DR-A0ZM-01 2 37306395 37306395 C T HEATR5B Missense_Mutation p.R69Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 2 39222312 39222312 C G SOS1 Missense_Mutation p.D1100H 0.26 tolerated(0.08) possibly_damaging(0.862) TCGA-DR-A0ZM-01 2 43010491 43010491 C T HAAO Missense_Mutation p.E105K 0.31 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 2 46525033 46525033 C G EPAS1 5'UTR 0.24 TCGA-DR-A0ZM-01 2 47705646 47705646 C T MSH2 Nonsense_Mutation p.Q816* 0.19 TCGA-DR-A0ZM-01 2 48026985 48026985 G C MSH6 Silent p.L621L 0.27 TCGA-DR-A0ZM-01 2 5832886 5832886 G C SOX11 Missense_Mutation p.E11D 0.15 tolerated(0.24) benign(0.008) TCGA-DR-A0ZM-01 2 63220778 63220778 C T EHBP1 Silent p.F1020F 0.22 TCGA-DR-A0ZM-01 2 73315528 73315528 C G RAB11FIP5 Silent p.L406L 0.23 TCGA-DR-A0ZM-01 2 73479988 73479988 G A CCT7 Silent p.%3D 0.24 TCGA-DR-A0ZM-01 2 74598150 74598150 C G DCTN1 Missense_Mutation p.E267Q 0.23 deleterious(0) probably_damaging(0.933) TCGA-DR-A0ZM-01 2 86426645 86426645 G A MRPL35 Missense_Mutation p.R11K 0.21 tolerated(0.09) unknown(0) TCGA-DR-A0ZM-01 2 95940548 95940548 C G PROM2 Missense_Mutation p.S72W 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-DR-A0ZM-01 2 96076738 96076738 C G FAHD2A Missense_Mutation p.L217V 0.18 deleterious(0.03) probably_damaging(0.945) TCGA-DR-A0ZM-01 2 9645420 9645420 G A ADAM17 Silent p.R473R 0.26 TCGA-DR-A0ZM-01 2 9645487 9645487 G A ADAM17 Missense_Mutation p.S451L 0.13 deleterious(0) probably_damaging(0.962) TCGA-DR-A0ZM-01 3 100992563 100992563 C G IMPG2 Silent p.V230V 0.05 TCGA-DR-A0ZM-01 3 101447778 101447778 G A CEP97 Silent p.L148L 0.23 TCGA-DR-A0ZM-01 3 10370484 10370484 G A ATP2B2 3'UTR 0.34 TCGA-DR-A0ZM-01 3 10384497 10384497 C T ATP2B2 Missense_Mutation p.M952I 0.21 tolerated(0.14) benign(0.018) TCGA-DR-A0ZM-01 3 108189047 108189047 C G MYH15 Missense_Mutation p.E486Q 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-DR-A0ZM-01 3 110852841 110852841 C G PVRL3 Missense_Mutation p.P477A 0.30 tolerated(0.25) benign(0.287) TCGA-DR-A0ZM-01 3 112642643 112642643 C T CD200R1 Missense_Mutation p.E310K 0.18 tolerated(0.06) benign(0.058) TCGA-DR-A0ZM-01 3 118865512 118865512 C A C3orf30 Missense_Mutation p.S159Y 0.23 tolerated(0.62) possibly_damaging(0.648) TCGA-DR-A0ZM-01 3 121410890 121410890 C G GOLGB1 Missense_Mutation p.D2441H 0.26 benign(0.044) TCGA-DR-A0ZM-01 3 122432391 122432391 C G PARP14 Nonsense_Mutation p.S1247* 0.24 TCGA-DR-A0ZM-01 3 124635176 124635176 G C MUC13 Missense_Mutation p.L317V 0.23 tolerated(0.3) benign(0.013) TCGA-DR-A0ZM-01 3 124732322 124732322 G C HEG1 Missense_Mutation p.L701V 0.15 tolerated(1) benign(0.071) TCGA-DR-A0ZM-01 3 125282577 125282577 C G OSBPL11 Missense_Mutation p.E327Q 0.19 tolerated(0.4) benign(0.008) TCGA-DR-A0ZM-01 3 126137952 126137952 G A CCDC37 Silent p.K228K 0.19 TCGA-DR-A0ZM-01 3 127439934 127439934 G A MGLL Silent p.L158L 0.06 TCGA-DR-A0ZM-01 3 129694836 129694836 C G TRH Missense_Mutation p.I59M 0.19 deleterious(0.01) benign(0.446) TCGA-DR-A0ZM-01 3 133654649 133654649 C T SLCO2A1 Missense_Mutation p.A595T 0.16 tolerated(0.51) benign(0.055) TCGA-DR-A0ZM-01 3 13679362 13679362 C - FBLN2 Frame_Shift_Del p.S1214Pfs*49 0.15 TCGA-DR-A0ZM-01 3 137842994 137842994 G C A4GNT 3'UTR 0.20 TCGA-DR-A0ZM-01 3 141164290 141164290 G C ZBTB38 Missense_Mutation p.Q1020H 0.09 deleterious(0.03) probably_damaging(0.969) TCGA-DR-A0ZM-01 3 141626075 141626075 C T ATP1B3 Missense_Mutation p.S102L 0.14 deleterious(0.03) possibly_damaging(0.605) TCGA-DR-A0ZM-01 3 142388394 142388394 C T PLS1 Missense_Mutation p.S78L 0.22 tolerated(0.07) benign(0.265) TCGA-DR-A0ZM-01 3 142735174 142735174 A G U2SURP Missense_Mutation p.K133E 0.17 deleterious(0) possibly_damaging(0.899) TCGA-DR-A0ZM-01 3 148927989 148927989 G A CP Missense_Mutation p.S191L 0.23 deleterious(0) possibly_damaging(0.905) TCGA-DR-A0ZM-01 3 150127342 150127342 G C TSC22D2 Missense_Mutation p.E69Q 0.32 deleterious(0) probably_damaging(0.968) TCGA-DR-A0ZM-01 3 150293454 150293454 C T EIF2A Nonsense_Mutation p.Q468* 0.14 TCGA-DR-A0ZM-01 3 151067972 151067972 G A MED12L Silent p.K757K 0.25 TCGA-DR-A0ZM-01 3 15131981 15131981 C T ZFYVE20 Missense_Mutation p.E72K 0.27 deleterious(0.03) benign(0.15) TCGA-DR-A0ZM-01 3 151451791 151451791 C G AADACL2 5'UTR 0.14 TCGA-DR-A0ZM-01 3 155632226 155632226 C T GMPS Missense_Mutation p.S302F 0.24 tolerated(0.06) benign(0.12) TCGA-DR-A0ZM-01 3 15633186 15633186 G A HACL1 Missense_Mutation p.P77S 0.27 deleterious(0) probably_damaging(0.98) TCGA-DR-A0ZM-01 3 156395966 156395966 G A TIPARP Silent p.Q160Q 0.21 TCGA-DR-A0ZM-01 3 156870834 156870834 A G CCNL1 Silent p.H200H 0.16 TCGA-DR-A0ZM-01 3 156877263 156877263 C G CCNL1 Silent p.A103A 0.15 TCGA-DR-A0ZM-01 3 157081331 157081331 C G VEPH1 Missense_Mutation p.E519D 0.25 tolerated(0.25) benign(0.003) TCGA-DR-A0ZM-01 3 158980334 158980334 C A IQCJ-SCHIP1 Intron 0.28 TCGA-DR-A0ZM-01 3 169579586 169579586 G A LRRC31 Missense_Mutation p.S64L 0.20 tolerated(0.08) benign(0.004) TCGA-DR-A0ZM-01 3 169587429 169587429 G C LRRC31 Nonsense_Mutation p.S56* 0.22 TCGA-DR-A0ZM-01 3 170109008 170109008 C G SKIL Nonsense_Mutation p.S619* 0.10 TCGA-DR-A0ZM-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.21 deleterious(0.04) probably_damaging(0.96) TCGA-DR-A0ZM-01 3 178976755 178976755 G C LRRFIP1P1 3'Flank 0.17 TCGA-DR-A0ZM-01 3 182583386 182583386 G A ATP11B Missense_Mutation p.G448E 0.18 deleterious(0.05) benign(0.28) TCGA-DR-A0ZM-01 3 182841895 182841895 G C LAMP3 Missense_Mutation p.Q409E 0.05 tolerated(1) benign(0.004) TCGA-DR-A0ZM-01 3 183669665 183669665 G A ABCC5 Nonsense_Mutation p.R932* 0.17 TCGA-DR-A0ZM-01 3 183858264 183858264 C G EIF2B5 Missense_Mutation p.S301C 0.20 tolerated(0.09) benign(0.013) TCGA-DR-A0ZM-01 3 183910898 183910898 G C ABCF3 Missense_Mutation p.E587Q 0.16 tolerated(0.41) benign(0.065) TCGA-DR-A0ZM-01 3 184040704 184040704 G A EIF4G1 Missense_Mutation p.E638K 0.21 deleterious(0) benign(0.334) TCGA-DR-A0ZM-01 3 184040742 184040742 G C EIF4G1 Missense_Mutation p.K650N 0.18 deleterious(0) probably_damaging(0.933) TCGA-DR-A0ZM-01 3 184566917 184566917 C A VPS8 Silent p.G200G 0.26 TCGA-DR-A0ZM-01 3 185798884 185798884 C T ETV5 Missense_Mutation p.E105K 0.24 tolerated(0.73) benign(0.239) TCGA-DR-A0ZM-01 3 186793657 186793657 G A ST6GAL1 3'UTR 0.23 TCGA-DR-A0ZM-01 3 190120149 190120149 C G CLDN16 Silent p.L116L 0.23 TCGA-DR-A0ZM-01 3 193364936 193364936 G C OPA1 Missense_Mutation p.E595Q 0.08 deleterious(0.02) possibly_damaging(0.77) TCGA-DR-A0ZM-01 3 195400839 195400839 C G SDHAP2 RNA 0.35 TCGA-DR-A0ZM-01 3 195692388 195692388 G C SDHAP1 RNA 0.13 TCGA-DR-A0ZM-01 3 195969477 195969477 G A PCYT1A Missense_Mutation p.S174L 0.19 tolerated(0.23) benign(0.017) TCGA-DR-A0ZM-01 3 25835623 25835623 G A OXSM Missense_Mutation p.E340K 0.26 tolerated(0.28) benign(0.005) TCGA-DR-A0ZM-01 3 3131906 3131906 G T IL5RA Intron 0.22 TCGA-DR-A0ZM-01 3 3139885 3139885 G A IL5RA Missense_Mutation p.L153F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DR-A0ZM-01 3 32776386 32776386 G C CNOT10 Missense_Mutation p.D538H 0.21 deleterious(0) possibly_damaging(0.83) TCGA-DR-A0ZM-01 3 38043241 38043241 G T VILL Nonsense_Mutation p.E457* 0.22 TCGA-DR-A0ZM-01 3 38648291 38648291 C T SCN5A Missense_Mutation p.E337K 0.17 tolerated(0.08) benign(0.034) TCGA-DR-A0ZM-01 3 38926868 38926868 G C SCN11A Nonsense_Mutation p.S992* 0.16 TCGA-DR-A0ZM-01 3 38946787 38946787 C A SCN11A Missense_Mutation p.R500L 0.18 tolerated(0.14) possibly_damaging(0.825) TCGA-DR-A0ZM-01 3 40528735 40528735 C G ZNF619 Nonsense_Mutation p.S285* 0.22 TCGA-DR-A0ZM-01 3 43122913 43122913 G A POMGNT2 Missense_Mutation p.S4L 0.23 deleterious_low_confidence(0.04) unknown(0) TCGA-DR-A0ZM-01 3 44497124 44497124 C T ZNF445 5'UTR 0.26 TCGA-DR-A0ZM-01 3 44826351 44826351 G C KIF15 Missense_Mutation p.D126H 0.14 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 3 45152247 45152247 C T CDCP1 Missense_Mutation p.E248K 0.18 deleterious(0) probably_damaging(0.993) TCGA-DR-A0ZM-01 3 46620626 46620626 G C TDGF1 Missense_Mutation p.G26A 0.17 tolerated(0.1) benign(0.132) TCGA-DR-A0ZM-01 3 47042572 47042572 G A NBEAL2 Missense_Mutation p.E1463K 0.14 tolerated(0.16) benign(0.068) TCGA-DR-A0ZM-01 3 48667573 48667573 G A SLC26A6 Silent p.I448I 0.25 TCGA-DR-A0ZM-01 3 48699501 48699501 C T CELSR3 Silent p.R189R 0.23 TCGA-DR-A0ZM-01 3 49049138 49049138 G A WDR6 Silent p.Q87Q 0.25 TCGA-DR-A0ZM-01 3 49349008 49349008 G C USP4 Missense_Mutation p.L259V 0.16 tolerated(0.5) benign(0) TCGA-DR-A0ZM-01 3 49400019 49400019 G C RHOA Missense_Mutation p.F106L 0.22 deleterious(0.03) possibly_damaging(0.689) TCGA-DR-A0ZM-01 3 49454675 49454675 G C AMT 3'UTR 0.21 TCGA-DR-A0ZM-01 3 49694913 49694913 G A BSN Missense_Mutation p.D2642N 0.26 unknown(0) TCGA-DR-A0ZM-01 3 49751254 49751254 G C RNF123 Missense_Mutation p.E945Q 0.30 deleterious(0.02) benign(0.115) TCGA-DR-A0ZM-01 3 49946585 49946585 C T MON1A Silent p.V607V 0.24 TCGA-DR-A0ZM-01 3 50137419 50137419 G C RBM5 Missense_Mutation p.R115P 0.21 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 3 50151469 50151469 G C RBM5 Missense_Mutation p.L568F 0.25 tolerated(0.57) benign(0.029) TCGA-DR-A0ZM-01 3 50252126 50252126 C T SLC38A3 RNA 0.16 TCGA-DR-A0ZM-01 3 5025226 5025226 C G BHLHE40 Missense_Mutation p.S363C 0.22 deleterious(0.01) benign(0.443) TCGA-DR-A0ZM-01 3 5025281 5025281 C T BHLHE40 Silent p.L381L 0.19 TCGA-DR-A0ZM-01 3 50327471 50327471 G A IFRD2 Silent p.L209L 0.24 TCGA-DR-A0ZM-01 3 50337989 50337989 C G HYAL1 Missense_Mutation p.Q411H 0.20 tolerated(0.22) benign(0.094) TCGA-DR-A0ZM-01 3 52328287 52328287 C G GLYCTK 3'Flank 0.25 TCGA-DR-A0ZM-01 3 52417975 52417975 G A DNAH1 Silent p.L2750L 0.16 TCGA-DR-A0ZM-01 3 52432098 52432098 C T DNAH1 Silent p.I4003I 0.25 TCGA-DR-A0ZM-01 3 52785972 52785972 G C NEK4 Missense_Mutation p.I448M 0.23 tolerated(0.19) benign(0.243) TCGA-DR-A0ZM-01 3 53326674 53326674 G C DCP1A Missense_Mutation p.Q270E 0.21 deleterious(0.04) benign(0.138) TCGA-DR-A0ZM-01 3 56763299 56763299 C G ARHGEF3 Nonstop_Mutation p.*559Sext*60 0.29 TCGA-DR-A0ZM-01 3 57108319 57108319 G C SPATA12 3'UTR 0.05 TCGA-DR-A0ZM-01 3 58394714 58394714 G C PXK Missense_Mutation p.E432Q 0.22 deleterious(0.01) possibly_damaging(0.892) TCGA-DR-A0ZM-01 3 64536684 64536684 C G ADAMTS9 Missense_Mutation p.D1585H 0.17 tolerated(0.16) benign(0.001) TCGA-DR-A0ZM-01 3 69073265 69073265 G C TMF1 Missense_Mutation p.Q1027E 0.33 tolerated(0.05) benign(0.119) TCGA-DR-A0ZM-01 3 77623803 77623803 G C ROBO2 Missense_Mutation p.E725Q 0.22 tolerated(0.24) possibly_damaging(0.755) TCGA-DR-A0ZM-01 3 97596225 97596225 G C CRYBG3 Missense_Mutation p.D115H 0.18 deleterious(0) possibly_damaging(0.607) TCGA-DR-A0ZM-01 3 9781517 9781517 G T BRPF1 Missense_Mutation p.W478C 0.36 tolerated(0.06) probably_damaging(0.998) TCGA-DR-A0ZM-01 3 9784724 9784724 G A BRPF1 Missense_Mutation p.E700K 0.24 deleterious(0) probably_damaging(0.995) TCGA-DR-A0ZM-01 3 99569565 99569565 G C FILIP1L Missense_Mutation p.Q319E 0.26 tolerated(0.07) probably_damaging(0.995) TCGA-DR-A0ZM-01 4 100047767 100047767 C G ADH4 Missense_Mutation p.D366H 0.12 tolerated(0.07) possibly_damaging(0.683) TCGA-DR-A0ZM-01 4 100125320 100125320 C G ADH6 3'UTR 0.18 TCGA-DR-A0ZM-01 4 100542386 100542386 C T MTTP Silent p.F837F 0.20 TCGA-DR-A0ZM-01 4 103579009 103579009 C T MANBA Missense_Mutation p.E512K 0.25 tolerated(0.22) benign(0.17) TCGA-DR-A0ZM-01 4 103610745 103610745 C A MANBA Nonsense_Mutation p.E316* 0.19 TCGA-DR-A0ZM-01 4 109578771 109578771 C - OSTC Frame_Shift_Del p.F133Lfs*7 0.14 TCGA-DR-A0ZM-01 4 113482022 113482022 C T C4orf21 Silent p.L1609L 0.15 TCGA-DR-A0ZM-01 4 114163301 114163301 G C ANK2 Missense_Mutation p.R276T 0.27 probably_damaging(1) TCGA-DR-A0ZM-01 4 114900072 114900072 G A ARSJ 5'UTR 0.24 TCGA-DR-A0ZM-01 4 119161697 119161697 G C NDST3 Missense_Mutation p.D713H 0.29 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 4 122735121 122735121 G A EXOSC9 Missense_Mutation p.E359K 0.24 tolerated_low_confidence(0.2) benign(0.392) TCGA-DR-A0ZM-01 4 123748407 123748407 C G FGF2 Missense_Mutation p.F159L 0.22 deleterious(0.04) benign(0.285) TCGA-DR-A0ZM-01 4 128811391 128811391 G C PLK4 Silent p.V610V 0.25 TCGA-DR-A0ZM-01 4 128842679 128842679 C T MFSD8 Silent p.Q450Q 0.27 TCGA-DR-A0ZM-01 4 13606335 13606335 C G BOD1L1 Missense_Mutation p.R730T 0.27 benign(0.048) TCGA-DR-A0ZM-01 4 13606553 13606553 C T BOD1L1 Silent p.R657R 0.25 TCGA-DR-A0ZM-01 4 145567658 145567658 T A HHIP 5'UTR 0.45 TCGA-DR-A0ZM-01 4 147830196 147830196 C G TTC29 Missense_Mutation p.E128Q 0.19 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 4 15009019 15009019 C T CPEB2 Missense_Mutation p.H585Y 0.25 tolerated_low_confidence(0.16) benign(0.051) TCGA-DR-A0ZM-01 4 154533509 154533509 G A KIAA0922 Missense_Mutation p.R1175K 0.21 tolerated(1) benign(0.001) TCGA-DR-A0ZM-01 4 155219826 155219826 C G DCHS2 Missense_Mutation p.E1425D 0.04 tolerated(0.2) benign(0.023) TCGA-DR-A0ZM-01 4 155505632 155505632 C G FGA Missense_Mutation p.E749Q 0.21 deleterious(0.04) benign(0.094) TCGA-DR-A0ZM-01 4 162680668 162680668 C T FSTL5 Missense_Mutation p.E208K 0.14 tolerated(0.27) benign(0.016) TCGA-DR-A0ZM-01 4 164246583 164246583 G A NPY1R Missense_Mutation p.R343W 0.24 deleterious(0.02) possibly_damaging(0.462) TCGA-DR-A0ZM-01 4 169842792 169842792 G C PALLD Silent p.L986L 0.26 TCGA-DR-A0ZM-01 4 170991780 170991780 G A AADAT Silent p.L226L 0.17 TCGA-DR-A0ZM-01 4 177052785 177052785 C G WDR17 Missense_Mutation p.Q356E 0.25 tolerated(0.46) probably_damaging(0.974) TCGA-DR-A0ZM-01 4 177713327 177713327 C T VEGFC Missense_Mutation p.E47K 0.22 tolerated(0.11) benign(0.187) TCGA-DR-A0ZM-01 4 183664378 183664378 C T TENM3 Silent p.V1145V 0.22 TCGA-DR-A0ZM-01 4 185340682 185340682 C G IRF2 Missense_Mutation p.R43T 0.15 deleterious(0) possibly_damaging(0.868) TCGA-DR-A0ZM-01 4 188923976 188923976 G A ZFP42 Silent p.L5L 0.18 TCGA-DR-A0ZM-01 4 189026426 189026426 C T TRIML2 5'UTR 0.23 TCGA-DR-A0ZM-01 4 247422 247422 G A ZNF876P RNA 0.16 TCGA-DR-A0ZM-01 4 25677949 25677949 G T SLC34A2 Missense_Mutation p.G551C 0.04 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 4 26364133 26364133 C G RBPJ Intron 0.23 TCGA-DR-A0ZM-01 4 2935543 2935543 G C MFSD10 Silent p.L36L 0.30 TCGA-DR-A0ZM-01 4 2949210 2949210 C G NOP14 Intron 0.23 TCGA-DR-A0ZM-01 4 3109064 3109064 G A HTT Missense_Mutation p.E221K 0.28 probably_damaging(0.975) TCGA-DR-A0ZM-01 4 3182304 3182304 G A HTT Missense_Mutation p.D1559N 0.23 probably_damaging(0.999) TCGA-DR-A0ZM-01 4 39217800 39217800 C T WDR19 Nonsense_Mutation p.R407* 0.25 TCGA-DR-A0ZM-01 4 39329178 39329178 G C RFC1 Missense_Mutation p.S177C 0.26 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 4 3949518 3949518 C T FAM86EP RNA 0.13 TCGA-DR-A0ZM-01 4 39905724 39905724 C G PDS5A Missense_Mutation p.E441Q 0.14 tolerated(0.21) benign(0.013) TCGA-DR-A0ZM-01 4 40244952 40244952 G A RHOH 5'UTR 0.42 TCGA-DR-A0ZM-01 4 42145723 42145723 G A BEND4 Missense_Mutation p.S259L 0.16 deleterious_low_confidence(0) benign(0.297) TCGA-DR-A0ZM-01 4 42467017 42467017 C G ATP8A1 Missense_Mutation p.D801H 0.23 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 4 52899627 52899627 G A SGCB Silent p.L71L 0.18 TCGA-DR-A0ZM-01 4 54319101 54319101 C T FIP1L1 Missense_Mutation p.L434F 0.15 deleterious(0.05) possibly_damaging(0.791) TCGA-DR-A0ZM-01 4 5458578 5458578 C T STK32B Silent p.L237L 0.27 TCGA-DR-A0ZM-01 4 56230311 56230311 C T SRD5A3 Silent p.F145F 0.30 TCGA-DR-A0ZM-01 4 56736998 56736998 C T EXOC1 Missense_Mutation p.S253F 0.23 deleterious(0.04) probably_damaging(0.968) TCGA-DR-A0ZM-01 4 57194504 57194504 C G KIAA1211 3'UTR 0.20 TCGA-DR-A0ZM-01 4 5858007 5858007 G C CRMP1 Missense_Mutation p.S228C 0.21 tolerated(0.19) possibly_damaging(0.599) TCGA-DR-A0ZM-01 4 5862760 5862760 C G CRMP1 Silent p.T216T 0.20 TCGA-DR-A0ZM-01 4 647895 647895 G C PDE6B Silent p.L293L 0.16 TCGA-DR-A0ZM-01 4 6622955 6622955 C A MAN2B2 Silent p.I991I 0.05 TCGA-DR-A0ZM-01 4 676567 676567 C T MFSD7 Intron 0.35 TCGA-DR-A0ZM-01 4 68484614 68484614 G C UBA6 3'UTR 0.12 TCGA-DR-A0ZM-01 4 68719872 68719872 G C TMPRSS11D Missense_Mutation p.Q55E 0.16 tolerated(0.82) benign(0.014) TCGA-DR-A0ZM-01 4 68777208 68777208 C T TMPRSS11A Missense_Mutation p.G373E 0.16 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 4 69528803 69528803 G C UGT2B15 Missense_Mutation p.L310V 0.19 deleterious(0) possibly_damaging(0.886) TCGA-DR-A0ZM-01 4 70620485 70620485 C T SULT1B1 Missense_Mutation p.M60I 0.28 deleterious(0.01) benign(0.248) TCGA-DR-A0ZM-01 4 77677800 77677800 G A SHROOM3 Silent p.Q1636Q 0.22 TCGA-DR-A0ZM-01 4 84368045 84368045 C T HELQ Silent p.V445V 0.16 TCGA-DR-A0ZM-01 4 8609103 8609103 C G CPZ Missense_Mutation p.S393C 0.22 deleterious(0) probably_damaging(0.985) TCGA-DR-A0ZM-01 4 86916229 86916229 G A ARHGAP24 Silent p.T474T 0.16 TCGA-DR-A0ZM-01 4 87685874 87685874 C T PTPN13 Silent p.V1382V 0.24 TCGA-DR-A0ZM-01 4 88047478 88047478 C T AFF1 Missense_Mutation p.S934L 0.27 tolerated(0.1) unknown(0) TCGA-DR-A0ZM-01 4 88312083 88312083 C G HSD17B11 Missense_Mutation p.G47A 0.18 deleterious(0) probably_damaging(0.909) TCGA-DR-A0ZM-01 4 89941646 89941646 G C FAM13A Nonsense_Mutation p.S131* 0.25 TCGA-DR-A0ZM-01 4 90035089 90035089 C G TIGD2 Missense_Mutation p.L322V 0.15 deleterious(0.01) possibly_damaging(0.847) TCGA-DR-A0ZM-01 4 95174009 95174009 G A SMARCAD1 Missense_Mutation p.E378K 0.21 deleterious(0.05) benign(0.029) TCGA-DR-A0ZM-01 4 95223384 95223384 G A HPGDS Silent p.F116F 0.25 TCGA-DR-A0ZM-01 4 96070069 96070069 C G BMPR1B Nonsense_Mutation p.S446* 0.22 TCGA-DR-A0ZM-01 5 110835787 110835787 C G STARD4 Missense_Mutation p.D139H 0.18 tolerated(0.27) benign(0.016) TCGA-DR-A0ZM-01 5 112200184 112200184 C G SRP19 Missense_Mutation p.Q50E 0.21 deleterious(0.03) benign(0.135) TCGA-DR-A0ZM-01 5 115230837 115230837 G C AP3S1 Missense_Mutation p.L109F 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-DR-A0ZM-01 5 118824910 118824910 G C HSD17B4 Missense_Mutation p.E241Q 0.25 tolerated(0.06) possibly_damaging(0.733) TCGA-DR-A0ZM-01 5 122734955 122734955 C G CEP120 Missense_Mutation p.D163H 0.24 deleterious(0.01) possibly_damaging(0.853) TCGA-DR-A0ZM-01 5 126746176 126746176 C A MEGF10 Missense_Mutation p.A338E 0.22 tolerated(0.11) benign(0.04) TCGA-DR-A0ZM-01 5 131825081 131825081 C G IRF1 Intron 0.22 TCGA-DR-A0ZM-01 5 131892890 131892890 C T RAD50 5'UTR 0.20 TCGA-DR-A0ZM-01 5 131976426 131976426 C T RAD50 Silent p.I1227I 0.04 TCGA-DR-A0ZM-01 5 132197395 132197395 C T GDF9 Silent p.P417P 0.19 TCGA-DR-A0ZM-01 5 133909370 133909370 G C JADE2 Missense_Mutation p.E490D 0.19 deleterious(0) benign(0.077) TCGA-DR-A0ZM-01 5 134086562 134086562 C T CAMLG Silent p.F271F 0.22 TCGA-DR-A0ZM-01 5 134153216 134153216 C T DDX46 Missense_Mutation p.L881F 0.19 tolerated(0.07) benign(0.062) TCGA-DR-A0ZM-01 5 134364558 134364558 G T PITX1 Silent p.R286R 0.20 TCGA-DR-A0ZM-01 5 134364608 134364608 G C PITX1 Missense_Mutation p.S269W 0.23 deleterious(0.01) probably_damaging(0.972) TCGA-DR-A0ZM-01 5 137219244 137219244 G A MYOT Missense_Mutation p.G330R 0.16 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 5 137754897 137754897 C T KDM3B Nonsense_Mutation p.Q1231* 0.24 TCGA-DR-A0ZM-01 5 13830290 13830290 C T DNAH5 Missense_Mutation p.D2032N 0.19 possibly_damaging(0.822) TCGA-DR-A0ZM-01 5 13916485 13916485 G C DNAH5 Missense_Mutation p.S390C 0.12 possibly_damaging(0.902) TCGA-DR-A0ZM-01 5 139193876 139193876 C T PSD2 Missense_Mutation p.H315Y 0.26 deleterious(0.01) benign(0.217) TCGA-DR-A0ZM-01 5 140041772 140041772 G A IK Silent p.E540E 0.24 TCGA-DR-A0ZM-01 5 140208780 140208780 C T PCDHA6 Silent p.V368V 0.21 TCGA-DR-A0ZM-01 5 140236799 140236799 C T PCDHA10 Missense_Mutation p.T389M 0.26 tolerated_low_confidence(0.1) benign(0.378) TCGA-DR-A0ZM-01 5 140530688 140530688 G A PCDHB6 Missense_Mutation p.D284N 0.18 tolerated(0.09) benign(0.005) TCGA-DR-A0ZM-01 5 140557849 140557849 C T PCDHB8 Silent p.L78L 0.07 TCGA-DR-A0ZM-01 5 140558368 140558368 G A PCDHB8 Silent p.Q251Q 0.09 TCGA-DR-A0ZM-01 5 140579307 140579307 G A PCDHB11 5'Flank 0.34 TCGA-DR-A0ZM-01 5 140723925 140723925 C T PCDHGA3 Silent p.L109L 0.18 TCGA-DR-A0ZM-01 5 140811509 140811509 G C PCDHGA12 Missense_Mutation p.E395Q 0.05 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-DR-A0ZM-01 5 141023934 141023934 G C FCHSD1 Missense_Mutation p.L572V 0.26 tolerated(0.36) benign(0.191) TCGA-DR-A0ZM-01 5 141359694 141359694 G C RNF14 Missense_Mutation p.E281Q 0.24 tolerated(0.45) benign(0.046) TCGA-DR-A0ZM-01 5 143604 143604 C T PLEKHG4B Silent p.F243F 0.21 TCGA-DR-A0ZM-01 5 143605 143605 C T PLEKHG4B Missense_Mutation p.H244Y 0.20 tolerated(0.57) benign(0.065) TCGA-DR-A0ZM-01 5 148521587 148521587 C G ABLIM3 5'UTR 0.24 TCGA-DR-A0ZM-01 5 150632828 150632828 C T GM2A Silent p.L17L 0.24 TCGA-DR-A0ZM-01 5 150892005 150892005 G T FAT2 Missense_Mutation p.L3876I 0.21 benign(0.281) TCGA-DR-A0ZM-01 5 150897244 150897244 C T FAT2 Silent p.L3800L 0.26 TCGA-DR-A0ZM-01 5 150897268 150897268 C T FAT2 Silent p.R3792R 0.18 TCGA-DR-A0ZM-01 5 150932740 150932740 G C FAT2 Nonsense_Mutation p.S1385* 0.25 TCGA-DR-A0ZM-01 5 150947186 150947186 G A FAT2 Missense_Mutation p.S436L 0.16 benign(0.005) TCGA-DR-A0ZM-01 5 156522409 156522409 G C HAVCR2 Missense_Mutation p.S195C 0.25 deleterious(0.02) benign(0.011) TCGA-DR-A0ZM-01 5 162902673 162902673 G A HMMR Silent p.L421L 0.23 TCGA-DR-A0ZM-01 5 16701893 16701893 C T MYO10 Missense_Mutation p.E871K 0.29 tolerated(0.19) benign(0.014) TCGA-DR-A0ZM-01 5 167489109 167489109 G A TENM2 Missense_Mutation p.E452K 0.33 tolerated(0.1) possibly_damaging(0.49) TCGA-DR-A0ZM-01 5 167671458 167671458 G A TENM2 Missense_Mutation p.D1852N 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-DR-A0ZM-01 5 167995799 167995799 C T PANK3 Missense_Mutation p.R78Q 0.19 tolerated(0.08) benign(0.043) TCGA-DR-A0ZM-01 5 169689718 169689718 G A LCP2 Nonsense_Mutation p.Q283* 0.32 TCGA-DR-A0ZM-01 5 171639088 171639088 C G UBTD2 Missense_Mutation p.E151Q 0.18 deleterious(0) probably_damaging(0.979) TCGA-DR-A0ZM-01 5 173383211 173383211 C T CPEB4 3'UTR 0.17 TCGA-DR-A0ZM-01 5 174870218 174870218 G C DRD1 5'UTR 0.19 TCGA-DR-A0ZM-01 5 175111023 175111023 G A HRH2 Missense_Mutation p.D263N 0.24 tolerated(0.42) benign(0.01) TCGA-DR-A0ZM-01 5 176023997 176023997 C G GPRIN1 Missense_Mutation p.E947Q 0.31 deleterious(0.01) probably_damaging(0.932) TCGA-DR-A0ZM-01 5 176824804 176824804 C G SLC34A1 Missense_Mutation p.F479L 0.23 tolerated(0.1) benign(0.253) TCGA-DR-A0ZM-01 5 176931884 176931884 C G DOK3 Missense_Mutation p.E225Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 5 180582416 180582416 G C OR2V2 Missense_Mutation p.L158F 0.28 tolerated(0.64) possibly_damaging(0.673) TCGA-DR-A0ZM-01 5 180631636 180631636 G C TRIM7 Missense_Mutation p.R159G 0.38 deleterious(0.03) possibly_damaging(0.804) TCGA-DR-A0ZM-01 5 32091059 32091059 C G PDZD2 Nonsense_Mutation p.S2502* 0.25 TCGA-DR-A0ZM-01 5 34043319 34043319 G T C1QTNF3 5'UTR 0.21 TCGA-DR-A0ZM-01 5 38407968 38407968 G C EGFLAM Missense_Mutation p.K403N 0.06 deleterious(0) possibly_damaging(0.873) TCGA-DR-A0ZM-01 5 38957801 38957801 G C RICTOR Missense_Mutation p.L818V 0.21 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 5 43294235 43294235 C G HMGCS1 Missense_Mutation p.R369T 0.28 deleterious(0.03) possibly_damaging(0.617) TCGA-DR-A0ZM-01 5 446437 446437 G A EXOC3 Silent p.K39K 0.23 TCGA-DR-A0ZM-01 5 52097658 52097658 G C PELO Missense_Mutation p.S381T 0.28 tolerated(0.29) benign(0.184) TCGA-DR-A0ZM-01 5 54570469 54570469 G C DHX29 Nonsense_Mutation p.S888* 0.35 TCGA-DR-A0ZM-01 5 5457444 5457444 G C KIAA0947 Splice_Site p.X231_splice 0.19 TCGA-DR-A0ZM-01 5 63256875 63256875 G A HTR1A Silent p.F224F 0.20 TCGA-DR-A0ZM-01 5 63257044 63257044 G A HTR1A Missense_Mutation p.S168F 0.26 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 5 64867770 64867770 G C PPWD1 Missense_Mutation p.R209P 0.24 deleterious(0.01) possibly_damaging(0.737) TCGA-DR-A0ZM-01 5 66438035 66438035 G C MAST4 Missense_Mutation p.E863Q 0.20 probably_damaging(0.994) TCGA-DR-A0ZM-01 5 67591082 67591082 A G PIK3R1 Missense_Mutation p.I559V 0.24 tolerated(0.08) possibly_damaging(0.831) TCGA-DR-A0ZM-01 5 68595899 68595899 C G CCDC125 Missense_Mutation p.K252N 0.22 deleterious(0.04) possibly_damaging(0.634) TCGA-DR-A0ZM-01 5 70837407 70837407 C G BDP1 Missense_Mutation p.S2050C 0.23 deleterious(0.03) probably_damaging(0.964) TCGA-DR-A0ZM-01 5 71494088 71494088 C T MAP1B Nonsense_Mutation p.Q1636* 0.18 TCGA-DR-A0ZM-01 5 72311459 72311459 C G FCHO2 Missense_Mutation p.Q203E 0.27 deleterious(0) benign(0.136) TCGA-DR-A0ZM-01 5 74656208 74656208 C T HMGCR 3'UTR 0.26 TCGA-DR-A0ZM-01 5 75581692 75581692 C T SV2C Silent p.F378F 0.18 TCGA-DR-A0ZM-01 5 75866443 75866443 C G IQGAP2 Silent p.V114V 0.16 TCGA-DR-A0ZM-01 5 7802390 7802390 C T ADCY2 Silent p.F896F 0.20 TCGA-DR-A0ZM-01 5 79027909 79027909 C G CMYA5 Silent p.L1107L 0.15 TCGA-DR-A0ZM-01 5 79747465 79747465 G C ZFYVE16 Missense_Mutation p.E1182Q 0.18 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 5 80626308 80626308 G C ACOT12 Missense_Mutation p.L525V 0.25 tolerated(0.55) benign(0.13) TCGA-DR-A0ZM-01 5 82832806 82832806 G A VCAN Intron 0.20 TCGA-DR-A0ZM-01 5 83360566 83360566 C T EDIL3 Missense_Mutation p.R302Q 0.13 tolerated(0.12) probably_damaging(0.979) TCGA-DR-A0ZM-01 5 89940684 89940684 G A GPR98 Missense_Mutation p.E966K 0.24 possibly_damaging(0.636) TCGA-DR-A0ZM-01 5 94764389 94764389 G C FAM81B Missense_Mutation p.E247Q 0.03 tolerated(0.29) possibly_damaging(0.675) TCGA-DR-A0ZM-01 6 10411851 10411851 G A TFAP2A Intron 0.23 TCGA-DR-A0ZM-01 6 106960255 106960255 G T AIM1 Silent p.R13R 0.31 TCGA-DR-A0ZM-01 6 108497812 108497812 C T NR2E1 Missense_Mutation p.S122L 0.21 tolerated(0.12) benign(0.163) TCGA-DR-A0ZM-01 6 110037666 110037666 G A FIG4 Missense_Mutation p.E62K 0.24 deleterious(0.01) probably_damaging(0.946) TCGA-DR-A0ZM-01 6 112439102 112439102 C G LAMA4 Splice_Site p.X1608_splice 0.24 TCGA-DR-A0ZM-01 6 117113846 117113846 C T GPRC6A Missense_Mutation p.G747E 0.19 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 6 117252713 117252713 C G RFX6 3'UTR 0.17 TCGA-DR-A0ZM-01 6 117609616 117609616 G C ROS1 3'UTR 0.28 TCGA-DR-A0ZM-01 6 11779075 11779075 G C ADTRP 5'Flank 0.21 TCGA-DR-A0ZM-01 6 12125327 12125327 G C HIVEP1 Missense_Mutation p.D1767H 0.17 deleterious(0) probably_damaging(0.98) TCGA-DR-A0ZM-01 6 121768311 121768311 G A GJA1 Silent p.L106L 0.22 TCGA-DR-A0ZM-01 6 121768436 121768436 G A GJA1 Missense_Mutation p.R148Q 0.16 tolerated(0.31) benign(0.026) TCGA-DR-A0ZM-01 6 127469843 127469843 G C RSPO3 Missense_Mutation p.D50H 0.20 deleterious(0) probably_damaging(0.962) TCGA-DR-A0ZM-01 6 128150975 128150975 G A THEMIS Missense_Mutation p.H119Y 0.23 tolerated(1) benign(0.015) TCGA-DR-A0ZM-01 6 130374065 130374065 C A L3MBTL3 Silent p.R171R 0.30 TCGA-DR-A0ZM-01 6 132910460 132910460 G A TAAR5 Silent p.I122I 0.22 TCGA-DR-A0ZM-01 6 134210781 134210781 C T TCF21 Silent p.N82N 0.34 TCGA-DR-A0ZM-01 6 134301220 134301220 G C TBPL1 Intron 0.23 TCGA-DR-A0ZM-01 6 135239582 135239582 C T ALDH8A1 Missense_Mutation p.E479K 0.19 deleterious(0) probably_damaging(0.938) TCGA-DR-A0ZM-01 6 136934380 136934380 G A MAP3K5 Missense_Mutation p.L765F 0.24 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 6 13807193 13807193 C T MCUR1 Missense_Mutation p.D167N 0.18 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 6 138428294 138428294 C T PERP Missense_Mutation p.E62K 0.27 tolerated(0.47) benign(0.001) TCGA-DR-A0ZM-01 6 139583895 139583895 G A TXLNB Missense_Mutation p.R235W 0.21 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 6 144086865 144086865 G A PHACTR2 Missense_Mutation p.E388K 0.24 deleterious_low_confidence(0.01) benign(0.325) TCGA-DR-A0ZM-01 6 150004621 150004621 C T LATS1 Missense_Mutation p.G535E 0.16 tolerated(0.32) benign(0.002) TCGA-DR-A0ZM-01 6 150210680 150210680 G C RAET1E Silent p.T142T 0.23 TCGA-DR-A0ZM-01 6 150266620 150266620 G C ULBP2 Missense_Mutation p.W87C 0.16 deleterious(0) probably_damaging(0.967) TCGA-DR-A0ZM-01 6 151789691 151789691 G C C6orf211 Missense_Mutation p.E258Q 0.22 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 6 152332810 152332810 C G ESR1 Silent p.L372L 0.14 TCGA-DR-A0ZM-01 6 152740727 152740727 G A SYNE1 Nonsense_Mutation p.Q1800* 0.08 TCGA-DR-A0ZM-01 6 152783910 152783910 G C SYNE1 Missense_Mutation p.S738C 0.27 probably_damaging(0.985) TCGA-DR-A0ZM-01 6 153332811 153332811 C G RGS17 Missense_Mutation p.Q177H 0.26 deleterious(0.02) benign(0.242) TCGA-DR-A0ZM-01 6 155750143 155750143 C T NOX3 Missense_Mutation p.M310I 0.21 tolerated(0.07) benign(0.333) TCGA-DR-A0ZM-01 6 160219111 160219111 G A MRPL18 Missense_Mutation p.E167K 0.19 deleterious(0) probably_damaging(0.982) TCGA-DR-A0ZM-01 6 1624425 1624425 C G GMDS Missense_Mutation p.M366I 0.15 tolerated_low_confidence(0.14) possibly_damaging(0.855) TCGA-DR-A0ZM-01 6 16295275 16295275 G C GMPR Missense_Mutation p.G299A 0.24 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 6 166571739 166571739 C G T 3'UTR 0.31 TCGA-DR-A0ZM-01 6 166918098 166918098 G C RPS6KA2 Silent p.V162V 0.22 TCGA-DR-A0ZM-01 6 168307902 168307902 G A MLLT4 Missense_Mutation p.E568K 0.05 tolerated(0.06) possibly_damaging(0.802) TCGA-DR-A0ZM-01 6 24843776 24843776 G C FAM65B Missense_Mutation p.L412V 0.28 tolerated(0.18) benign(0.073) TCGA-DR-A0ZM-01 6 25826704 25826704 G A SLC17A1 Silent p.L64L 0.20 TCGA-DR-A0ZM-01 6 26017517 26017517 C G HIST1H1A Missense_Mutation p.K148N 0.25 tolerated(0.06) unknown(0) TCGA-DR-A0ZM-01 6 26240864 26240864 G A HIST1H4F Missense_Mutation p.V71I 0.25 tolerated(0.13) benign(0.183) TCGA-DR-A0ZM-01 6 26273420 26273420 C T HIST1H2BI Missense_Mutation p.R73C 0.03 tolerated_low_confidence(0.12) benign(0.077) TCGA-DR-A0ZM-01 6 26273432 26273432 G A HIST1H2BI Missense_Mutation p.E77K 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-DR-A0ZM-01 6 26444366 26444366 G A BTN3A3 Silent p.Q89Q 0.16 TCGA-DR-A0ZM-01 6 2749514 2749514 C G MYLK4 Missense_Mutation p.K5N 0.14 tolerated_low_confidence(0.33) benign(0.001) TCGA-DR-A0ZM-01 6 29643801 29643801 G T ZFP57 Missense_Mutation p.F53L 0.18 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 6 29910587 29910587 G T HLA-A Nonsense_Mutation p.E43* 0.18 TCGA-DR-A0ZM-01 6 29974424 29974424 G A ZNRD1-AS1 Intron 0.26 TCGA-DR-A0ZM-01 6 30114945 30114945 C T TRIM40 Silent p.L180L 0.12 TCGA-DR-A0ZM-01 6 30522575 30522575 G A GNL1 Missense_Mutation p.S165F 0.19 deleterious(0.04) benign(0.223) TCGA-DR-A0ZM-01 6 30889913 30889913 C G VARS2 Missense_Mutation p.F639L 0.23 deleterious(0) probably_damaging(0.987) TCGA-DR-A0ZM-01 6 31926158 31926158 G C NELFE Silent p.L22L 0.15 TCGA-DR-A0ZM-01 6 31926167 31926167 G A NELFE Silent p.F19F 0.15 TCGA-DR-A0ZM-01 6 32065772 32065772 C G TNXB Missense_Mutation p.E68D 0.34 probably_damaging(0.953) TCGA-DR-A0ZM-01 6 32905079 32905079 C G HLA-DMB Missense_Mutation p.K164N 0.23 tolerated(0.34) benign(0.07) TCGA-DR-A0ZM-01 6 33054002 33054002 G C HLA-DPB1 Missense_Mutation p.R255P 0.16 tolerated(0.07) possibly_damaging(0.47) TCGA-DR-A0ZM-01 6 33264531 33264531 G C RGL2 Missense_Mutation p.S88C 0.28 tolerated(0.13) benign(0.001) TCGA-DR-A0ZM-01 6 33368289 33368289 C G KIFC1 Intron 0.17 TCGA-DR-A0ZM-01 6 33402938 33402938 G A SYNGAP1 Silent p.L173L 0.19 TCGA-DR-A0ZM-01 6 33663377 33663377 G A SBP1 Missense_Mutation p.S33L 0.32 unknown(0) TCGA-DR-A0ZM-01 6 34386188 34386188 C G RPS10 Missense_Mutation p.K138N 0.33 deleterious(0.01) possibly_damaging(0.851) TCGA-DR-A0ZM-01 6 34826826 34826826 C T UHRF1BP1 Missense_Mutation p.S898L 0.38 deleterious(0.02) benign(0.03) TCGA-DR-A0ZM-01 6 34850872 34850872 G C TAF11 Intron 0.18 TCGA-DR-A0ZM-01 6 34985727 34985727 C T ANKS1A Missense_Mutation p.S634L 0.22 tolerated(0.43) benign(0.019) TCGA-DR-A0ZM-01 6 35046359 35046359 G A ANKS1A Missense_Mutation p.D737N 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-DR-A0ZM-01 6 35260389 35260389 G A ZNF76 Silent p.S330S 0.22 TCGA-DR-A0ZM-01 6 35378850 35378850 G C PPARD 5'UTR 0.25 TCGA-DR-A0ZM-01 6 35587911 35587911 C G FKBP5 Missense_Mutation p.E131Q 0.21 tolerated(0.06) possibly_damaging(0.803) TCGA-DR-A0ZM-01 6 35928783 35928783 C T SLC26A8 Missense_Mutation p.V519I 0.17 tolerated(0.23) benign(0.13) TCGA-DR-A0ZM-01 6 36168470 36168470 C G BRPF3 Nonsense_Mutation p.S124* 0.21 TCGA-DR-A0ZM-01 6 3850731 3850731 C T FAM50B Missense_Mutation p.S229F 0.24 deleterious(0.01) possibly_damaging(0.811) TCGA-DR-A0ZM-01 6 38738332 38738332 G C DNAH8 Missense_Mutation p.E370D 0.22 benign(0.049) TCGA-DR-A0ZM-01 6 40400385 40400385 G C LRFN2 Silent p.L156L 0.25 TCGA-DR-A0ZM-01 6 41060708 41060708 G A NFYA Missense_Mutation p.E258K 0.18 deleterious(0.01) benign(0.303) TCGA-DR-A0ZM-01 6 42713832 42713832 C G TBCC 5'UTR 0.06 TCGA-DR-A0ZM-01 6 42819892 42819892 G C GLTSCR1L Silent p.L634L 0.17 TCGA-DR-A0ZM-01 6 42974371 42974371 C T PPP2R5D Silent p.F92F 0.28 TCGA-DR-A0ZM-01 6 43184222 43184222 G A CUL9 Missense_Mutation p.C2088Y 0.26 deleterious(0) probably_damaging(0.993) TCGA-DR-A0ZM-01 6 43250774 43250774 G A TTBK1 Missense_Mutation p.E766K 0.25 probably_damaging(0.931) TCGA-DR-A0ZM-01 6 43322623 43322623 C G ZNF318 Missense_Mutation p.E817Q 0.23 possibly_damaging(0.521) TCGA-DR-A0ZM-01 6 43591477 43591477 G C GTPBP2 Missense_Mutation p.S431C 0.21 tolerated(0.14) benign(0.428) TCGA-DR-A0ZM-01 6 47846359 47846359 C G PTCHD4 Missense_Mutation p.E741Q 0.08 tolerated(0.08) probably_damaging(0.988) TCGA-DR-A0ZM-01 6 52761709 52761709 G A GSTA3 Silent p.I188I 0.21 TCGA-DR-A0ZM-01 6 53778727 53778727 C G LRRC1 Missense_Mutation p.Q356E 0.28 tolerated(0.13) benign(0.013) TCGA-DR-A0ZM-01 6 54735070 54735070 C T FAM83B Missense_Mutation p.S9L 0.31 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 6 64395258 64395258 C G PHF3 Silent p.V545V 0.15 TCGA-DR-A0ZM-01 6 70500257 70500257 G C LMBRD1 Missense_Mutation p.I59M 0.16 tolerated(0.23) benign(0.406) TCGA-DR-A0ZM-01 6 7373584 7373584 C T CAGE1 Missense_Mutation p.E490K 0.23 deleterious(0.05) probably_damaging(0.953) TCGA-DR-A0ZM-01 6 7413155 7413155 G C RIOK1 Missense_Mutation p.D475H 0.21 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 6 7582905 7582905 C T DSP Nonsense_Mutation p.Q1804* 0.29 TCGA-DR-A0ZM-01 6 79944189 79944189 G C HMGN3 Intron 0.24 TCGA-DR-A0ZM-01 6 88265199 88265199 C G RARS2 Missense_Mutation p.D108H 0.18 deleterious(0.02) benign(0.182) TCGA-DR-A0ZM-01 6 89862863 89862863 C T PM20D2 Missense_Mutation p.S239F 0.18 deleterious(0) probably_damaging(0.992) TCGA-DR-A0ZM-01 6 89895170 89895170 C T GABRR1 Splice_Site p.X219_splice 0.16 TCGA-DR-A0ZM-01 6 96971061 96971061 G A UFL1 Silent p.L39L 0.17 TCGA-DR-A0ZM-01 7 100189465 100189465 C T FBXO24 Silent p.L204L 0.13 TCGA-DR-A0ZM-01 7 100685909 100685909 C G MUC17 Missense_Mutation p.L3738V 0.20 benign(0.002) TCGA-DR-A0ZM-01 7 100806313 100806313 C G VGF Missense_Mutation p.E604D 0.28 deleterious_low_confidence(0.02) unknown(0) TCGA-DR-A0ZM-01 7 103008360 103008360 C T PSMC2 Silent p.S387S 0.22 TCGA-DR-A0ZM-01 7 104909303 104909303 C T SRPK2 Intron 0.19 TCGA-DR-A0ZM-01 7 105621546 105621546 G A CDHR3 Missense_Mutation p.E128K 0.24 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 7 105635288 105635288 G C CDHR3 Missense_Mutation p.R202T 0.11 tolerated(0.41) benign(0.005) TCGA-DR-A0ZM-01 7 105662778 105662778 G A CDHR3 Missense_Mutation p.D654N 0.19 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 7 107240940 107240940 G C BCAP29 Missense_Mutation p.K193N 0.16 tolerated(0.07) benign(0.26) TCGA-DR-A0ZM-01 7 107434305 107434305 C T SLC26A3 Silent p.K51K 0.31 TCGA-DR-A0ZM-01 7 11446088 11446088 C T THSD7A Missense_Mutation p.G1359E 0.29 deleterious(0) probably_damaging(0.989) TCGA-DR-A0ZM-01 7 116593810 116593810 C G ST7 Intron 0.23 TCGA-DR-A0ZM-01 7 117232505 117232505 C T CFTR Nonsense_Mutation p.Q762* 0.27 TCGA-DR-A0ZM-01 7 121659177 121659177 G C PTPRZ1 Splice_Site p.X1615_splice 0.21 TCGA-DR-A0ZM-01 7 123182233 123182233 C - NDUFA5 Frame_Shift_Del p.W97* 0.19 TCGA-DR-A0ZM-01 7 128315720 128315720 G A FAM71F2 Missense_Mutation p.D58N 0.31 tolerated_low_confidence(0.52) benign(0.002) TCGA-DR-A0ZM-01 7 128414594 128414594 G A OPN1SW Silent p.L215L 0.23 TCGA-DR-A0ZM-01 7 128481359 128481359 G C FLNC Missense_Mutation p.R650P 0.21 tolerated(0.44) possibly_damaging(0.559) TCGA-DR-A0ZM-01 7 134618280 134618280 C A CALD1 Missense_Mutation p.H254N 0.20 tolerated_low_confidence(1) unknown(0) TCGA-DR-A0ZM-01 7 137082127 137082127 C A DGKI Nonsense_Mutation p.E993* 0.31 TCGA-DR-A0ZM-01 7 138758630 138758630 G A ZC3HAV1 Missense_Mutation p.S615F 0.22 tolerated(0.75) probably_damaging(0.965) TCGA-DR-A0ZM-01 7 138764300 138764300 G C ZC3HAV1 Missense_Mutation p.Q463E 0.23 deleterious(0.04) possibly_damaging(0.585) TCGA-DR-A0ZM-01 7 138946461 138946461 G C UBN2 Missense_Mutation p.E457Q 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-DR-A0ZM-01 7 140378978 140378978 G A ADCK2 Silent p.Q368Q 0.28 TCGA-DR-A0ZM-01 7 142563810 142563810 G A EPHB6 Missense_Mutation p.D400N 0.19 deleterious(0) probably_damaging(0.995) TCGA-DR-A0ZM-01 7 143421834 143421834 C G FAM115C 3'UTR 0.24 TCGA-DR-A0ZM-01 7 147869395 147869395 G C CNTNAP2 Silent p.V945V 0.28 TCGA-DR-A0ZM-01 7 148769447 148769447 C T ZNF786 Silent p.G139G 0.08 TCGA-DR-A0ZM-01 7 150493471 150493471 C G TMEM176B Missense_Mutation p.E63Q 0.22 tolerated(0.27) benign(0.154) TCGA-DR-A0ZM-01 7 151711802 151711802 G A GALNTL5 Missense_Mutation p.G367E 0.24 tolerated(0.24) benign(0) TCGA-DR-A0ZM-01 7 151859593 151859593 G C KMT2C Nonsense_Mutation p.S3690* 0.23 TCGA-DR-A0ZM-01 7 151860030 151860030 G A KMT2C Silent p.F3544F 0.23 TCGA-DR-A0ZM-01 7 151860641 151860641 G T KMT2C Missense_Mutation p.P3341T 0.23 benign(0.008) TCGA-DR-A0ZM-01 7 151919142 151919142 G C KMT2C Nonsense_Mutation p.S1148* 0.19 TCGA-DR-A0ZM-01 7 155473423 155473423 C T RBM33 Missense_Mutation p.H130Y 0.12 tolerated(1) benign(0.309) TCGA-DR-A0ZM-01 7 156468504 156468504 G C RNF32 Missense_Mutation p.E267Q 0.15 tolerated(0.27) benign(0.145) TCGA-DR-A0ZM-01 7 156468519 156468519 G A RNF32 Missense_Mutation p.E272K 0.16 tolerated(0.45) benign(0.047) TCGA-DR-A0ZM-01 7 156981687 156981687 G C UBE3C Intron 0.16 TCGA-DR-A0ZM-01 7 157926700 157926700 G C PTPRN2 Missense_Mutation p.R409G 0.26 tolerated(0.4) benign(0.001) TCGA-DR-A0ZM-01 7 158534343 158534343 C T ESYT2 Missense_Mutation p.R707K 0.29 tolerated(0.39) benign(0.031) TCGA-DR-A0ZM-01 7 158723168 158723168 C G WDR60 Silent p.V836V 0.22 TCGA-DR-A0ZM-01 7 16720997 16720997 G A BZW2 Missense_Mutation p.E103K 0.23 tolerated(0.16) probably_damaging(0.971) TCGA-DR-A0ZM-01 7 18801829 18801829 C T HDAC9 Missense_Mutation p.S698F 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-DR-A0ZM-01 7 21826259 21826259 G A DNAH11 Silent p.L3212L 0.31 TCGA-DR-A0ZM-01 7 27140514 27140514 G C HOXA2 Missense_Mutation p.S321C 0.17 tolerated(0.13) possibly_damaging(0.885) TCGA-DR-A0ZM-01 7 27150260 27150260 C T HOXA3 5'UTR 0.17 TCGA-DR-A0ZM-01 7 32529949 32529949 G A LSM5 Missense_Mutation p.S10L 0.13 tolerated(0.07) benign(0.033) TCGA-DR-A0ZM-01 7 33946488 33946488 C T BMPER Silent p.D64D 0.15 TCGA-DR-A0ZM-01 7 35284624 35284624 G C TBX20 Silent p.L197L 0.24 TCGA-DR-A0ZM-01 7 38398685 38398685 G T TRGV3 5'UTR 0.28 TCGA-DR-A0ZM-01 7 40134371 40134371 C T CDK13 Missense_Mutation p.S1444F 0.18 tolerated_low_confidence(0.12) possibly_damaging(0.77) TCGA-DR-A0ZM-01 7 42961391 42961391 C G PSMA2 Intron 0.17 TCGA-DR-A0ZM-01 7 44268527 44268527 G C CAMK2B Intron 0.24 TCGA-DR-A0ZM-01 7 44715759 44715759 G C OGDH Intron 0.22 TCGA-DR-A0ZM-01 7 45015178 45015178 G C MYO1G Missense_Mutation p.H157D 0.19 tolerated(1) benign(0.345) TCGA-DR-A0ZM-01 7 45662258 45662258 C G ADCY1 Missense_Mutation p.F312L 0.33 deleterious(0) possibly_damaging(0.765) TCGA-DR-A0ZM-01 7 4780530 4780530 G A FOXK1 Missense_Mutation p.E208K 0.21 tolerated(0.19) benign(0.032) TCGA-DR-A0ZM-01 7 47880142 47880142 G A PKD1L1 Silent p.D1823D 0.25 TCGA-DR-A0ZM-01 7 47942089 47942089 C T PKD1L1 Missense_Mutation p.E651K 0.23 tolerated(0.06) benign(0.354) TCGA-DR-A0ZM-01 7 50468297 50468297 G C IKZF1 Missense_Mutation p.R469P 0.15 deleterious(0) probably_damaging(1) TCGA-DR-A0ZM-01 7 5331358 5331358 C A SLC29A4 Silent p.I150I 0.18 TCGA-DR-A0ZM-01 7 6048667 6048667 C T PMS2 5'UTR 0.22 TCGA-DR-A0ZM-01 7 64168506 64168506 C T ZNF107 Silent p.H608H 0.06 TCGA-DR-A0ZM-01 7 6441588 6441588 C T RAC1 Silent p.I145I 0.23 TCGA-DR-A0ZM-01 7 65440021 65440021 G A GUSB Missense_Mutation p.S317F 0.16 tolerated(0.18) benign(0.035) TCGA-DR-A0ZM-01 7 65440036 65440036 G A GUSB Missense_Mutation p.S312L 0.16 tolerated(0.26) benign(0.005) TCGA-DR-A0ZM-01 7 72419308 72419308 C G POM121 3'UTR 0.14 TCGA-DR-A0ZM-01 7 72892242 72892242 C G BAZ1B Missense_Mutation p.E517Q 0.21 tolerated(0.11) possibly_damaging(0.701) TCGA-DR-A0ZM-01 7 73020081 73020081 C G MLXIPL Missense_Mutation p.D280H 0.09 deleterious(0) probably_damaging(0.947) TCGA-DR-A0ZM-01 7 73511476 73511476 G A LIMK1 Missense_Mutation p.D120N 0.24 deleterious(0.03) probably_damaging(0.975) TCGA-DR-A0ZM-01 7 74016760 74016760 G C GTF2IRD1 Nonstop_Mutation p.*977Yext*13 0.23 TCGA-DR-A0ZM-01 7 75053460 75053460 G C POM121C Nonsense_Mutation p.S307* 0.03 TCGA-DR-A0ZM-01 7 76179053 76179053 C G UPK3B Intron 0.21 TCGA-DR-A0ZM-01 7 81624244 81624244 C G CACNA2D1 Missense_Mutation p.K558N 0.25 tolerated(0.1) possibly_damaging(0.61) TCGA-DR-A0ZM-01 7 82545961 82545961 G A PCLO Nonsense_Mutation p.R3781* 0.20 TCGA-DR-A0ZM-01 7 82583425 82583425 C T PCLO Missense_Mutation p.E2282K 0.24 unknown(0) TCGA-DR-A0ZM-01 7 82583502 82583502 C T PCLO Missense_Mutation p.R2256K 0.16 unknown(0) TCGA-DR-A0ZM-01 7 82583509 82583509 C T PCLO Missense_Mutation p.D2254N 0.14 unknown(0) TCGA-DR-A0ZM-01 7 8268241 8268241 C G ICA1 Missense_Mutation p.K82N 0.20 tolerated(0.19) possibly_damaging(0.733) TCGA-DR-A0ZM-01 7 82764504 82764504 C T PCLO Missense_Mutation p.E788K 0.21 unknown(0) TCGA-DR-A0ZM-01 7 90419921 90419921 C T CDK14 Silent p.I148I 0.19 TCGA-DR-A0ZM-01 8 101078512 101078512 G C RGS22 Missense_Mutation p.Q203E 0.25 tolerated(0.13) benign(0.059) TCGA-DR-A0ZM-01 8 103664550 103664550 C T KLF10 Missense_Mutation p.D38N 0.24 deleterious(0) probably_damaging(0.98) TCGA-DR-A0ZM-01 8 124140567 124140567 G A TBC1D31 Missense_Mutation p.R644K 0.24 tolerated(1) benign(0.001) TCGA-DR-A0ZM-01 8 124146362 124146362 G C TBC1D31 Missense_Mutation p.M805I 0.16 tolerated(0.05) benign(0.04) TCGA-DR-A0ZM-01 8 124267638 124267638 G C ZHX1 Missense_Mutation p.I183M 0.26 tolerated(0.05) probably_damaging(0.995) TCGA-DR-A0ZM-01 8 125565852 125565852 C G MTSS1 Missense_Mutation p.R550T 0.12 deleterious(0) probably_damaging(0.989) TCGA-DR-A0ZM-01 8 126051122 126051122 C G KIAA0196 Missense_Mutation p.E1012Q 0.24 tolerated(0.05) probably_damaging(0.955) TCGA-DR-A0ZM-01 8 12957629 12957629 C T DLC1 Silent p.Q739Q 0.18 TCGA-DR-A0ZM-01 8 131964194 131964194 G A ADCY8 Silent p.I387I 0.25 TCGA-DR-A0ZM-01 8 144945860 144945860 G C EPPK1 Nonsense_Mutation p.S521* 0.32 TCGA-DR-A0ZM-01 8 144996564 144996564 C G PLEC Splice_Site p.X2613_splice 0.19 TCGA-DR-A0ZM-01 8 144997172 144997172 C G PLEC Missense_Mutation p.E2446Q 0.12 probably_damaging(0.995) TCGA-DR-A0ZM-01 8 144997494 144997494 C G PLEC Missense_Mutation p.Q2338H 0.21 probably_damaging(0.961) TCGA-DR-A0ZM-01 8 144997691 144997691 C G PLEC Missense_Mutation p.E2273Q 0.26 unknown(0) TCGA-DR-A0ZM-01 8 144999689 144999689 C T PLEC Missense_Mutation p.G1607R 0.32 unknown(0) TCGA-DR-A0ZM-01 8 1765426 1765426 C T MIR596 RNA 0.25 TCGA-DR-A0ZM-01 8 21904123 21904123 G C FGF17 Missense_Mutation p.K112N 0.26 tolerated(0.08) benign(0.123) TCGA-DR-A0ZM-01 8 21995920 21995920 G C REEP4 3'UTR 0.20 TCGA-DR-A0ZM-01 8 28876293 28876293 G A HMBOX1 Missense_Mutation p.M238I 0.28 tolerated(0.09) possibly_damaging(0.468) TCGA-DR-A0ZM-01 8 3046514 3046514 G A CSMD1 Silent p.F1806F 0.24 TCGA-DR-A0ZM-01 8 30700686 30700686 C G TEX15 Missense_Mutation p.E1950Q 0.21 tolerated(0.26) possibly_damaging(0.66) TCGA-DR-A0ZM-01 8 30701580 30701580 C G TEX15 Missense_Mutation p.E1652Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 8 30704421 30704421 C T TEX15 Missense_Mutation p.E705K 0.29 deleterious(0) probably_damaging(0.933) TCGA-DR-A0ZM-01 8 30704944 30704944 C G TEX15 Missense_Mutation p.L530F 0.19 deleterious(0.01) probably_damaging(0.952) TCGA-DR-A0ZM-01 8 36766906 36766906 G C KCNU1 Silent p.P728P 0.24 TCGA-DR-A0ZM-01 8 37556024 37556024 G T ZNF703 Silent p.R535R 0.38 TCGA-DR-A0ZM-01 8 42927367 42927367 C G FNTA Missense_Mutation p.Q184E 0.22 tolerated(0.59) benign(0.001) TCGA-DR-A0ZM-01 8 43152239 43152239 C T POTEA RNA 0.21 TCGA-DR-A0ZM-01 8 48309015 48309015 C G SPIDR Nonsense_Mutation p.S202* 0.20 TCGA-DR-A0ZM-01 8 53569888 53569888 G C RB1CC1 Nonsense_Mutation p.S834* 0.23 TCGA-DR-A0ZM-01 8 53586728 53586728 C G RB1CC1 Missense_Mutation p.E227Q 0.26 tolerated(0.18) benign(0.316) TCGA-DR-A0ZM-01 8 55538983 55538983 G C RP1 Missense_Mutation p.L847F 0.20 deleterious(0.03) possibly_damaging(0.753) TCGA-DR-A0ZM-01 8 57079819 57079819 C T PLAG1 Silent p.T162T 0.31 TCGA-DR-A0ZM-01 8 59490703 59490703 G C SDCBP Missense_Mutation p.D172H 0.13 deleterious(0.03) possibly_damaging(0.796) TCGA-DR-A0ZM-01 8 61765259 61765259 G C CHD7 Missense_Mutation p.D2033H 0.26 possibly_damaging(0.897) TCGA-DR-A0ZM-01 8 62566204 62566204 G C ASPH Missense_Mutation p.S113C 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.897) TCGA-DR-A0ZM-01 8 66619257 66619257 C G MTFR1 Missense_Mutation p.S177C 0.13 deleterious(0.04) possibly_damaging(0.778) TCGA-DR-A0ZM-01 8 67577872 67577872 C T VCPIP1 Missense_Mutation p.R441K 0.23 tolerated(0.47) benign(0.194) TCGA-DR-A0ZM-01 8 67577894 67577894 C T VCPIP1 Missense_Mutation p.D434N 0.23 deleterious(0) probably_damaging(0.987) TCGA-DR-A0ZM-01 8 8176255 8176255 G A SGK223 Silent p.I1210I 0.28 TCGA-DR-A0ZM-01 8 87552517 87552517 C G CPNE3 Missense_Mutation p.I196M 0.16 deleterious(0.01) probably_damaging(0.936) TCGA-DR-A0ZM-01 8 87559984 87559984 C T CPNE3 Nonsense_Mutation p.Q289* 0.19 TCGA-DR-A0ZM-01 8 88365923 88365923 G A CNBD1 Silent p.E404E 0.05 TCGA-DR-A0ZM-01 8 89068395 89068395 C T MMP16 Nonsense_Mutation p.W445* 0.19 TCGA-DR-A0ZM-01 8 90947807 90947807 C G NBN 3'UTR 0.12 TCGA-DR-A0ZM-01 8 98701269 98701287 ATTCTCATCTAAATGTTCA - MTDH Frame_Shift_Del p.D250Efs*20 0.18 TCGA-DR-A0ZM-01 8 99208193 99208193 G A NIPAL2 Silent p.L307L 0.10 TCGA-DR-A0ZM-01 8 99264812 99264812 G A NIPAL2 Silent p.F85F 0.23 TCGA-DR-A0ZM-01 9 100881419 100881419 C T TRIM14 Missense_Mutation p.E18K 0.20 tolerated(0.2) benign(0.026) TCGA-DR-A0ZM-01 9 107367884 107367884 G C OR13C2 Missense_Mutation p.L9V 0.17 tolerated(1) benign(0.008) TCGA-DR-A0ZM-01 9 108061569 108061569 C T SLC44A1 Silent p.F35F 0.21 TCGA-DR-A0ZM-01 9 111641013 111641013 C T IKBKAP Missense_Mutation p.R1197H 0.20 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 9 111668766 111668766 C T IKBKAP Splice_Site p.X487_splice 0.17 TCGA-DR-A0ZM-01 9 113170526 113170526 C G SVEP1 Missense_Mutation p.D2452H 0.18 benign(0.424) TCGA-DR-A0ZM-01 9 113261352 113261352 C T SVEP1 Nonsense_Mutation p.W550* 0.21 TCGA-DR-A0ZM-01 9 114172371 114172371 G A KIAA0368 Missense_Mutation p.L1012F 0.25 deleterious(0.01) benign(0.26) TCGA-DR-A0ZM-01 9 116346022 116346022 C T RGS3 Missense_Mutation p.S777L 0.25 tolerated_low_confidence(0.33) benign(0.002) TCGA-DR-A0ZM-01 9 117104310 117104310 C T AKNA Missense_Mutation p.G1285S 0.14 tolerated(0.33) benign(0.015) TCGA-DR-A0ZM-01 9 120466742 120466742 G A TLR4 5'UTR 0.19 TCGA-DR-A0ZM-01 9 123533705 123533705 G A FBXW2 Missense_Mutation p.H333Y 0.28 deleterious(0.01) benign(0.091) TCGA-DR-A0ZM-01 9 126125380 126125380 G C CRB2 Missense_Mutation p.E111Q 0.23 deleterious(0) unknown(0) TCGA-DR-A0ZM-01 9 130605495 130605495 G A ENG Nonsense_Mutation p.Q33* 0.16 TCGA-DR-A0ZM-01 9 130742405 130742405 C G FAM102A Missense_Mutation p.L4F 0.17 tolerated(0.15) probably_damaging(0.997) TCGA-DR-A0ZM-01 9 130947884 130947884 G A CIZ1 Missense_Mutation p.S177L 0.25 deleterious(0.02) probably_damaging(0.94) TCGA-DR-A0ZM-01 9 131262372 131262372 G T ODF2 Silent p.L776L 0.20 TCGA-DR-A0ZM-01 9 131361301 131361301 G C SPTAN1 Intron 0.23 TCGA-DR-A0ZM-01 9 132590354 132590354 G C C9orf78 3'UTR 0.16 TCGA-DR-A0ZM-01 9 133769049 133769049 C A QRFP Silent p.L59L 0.25 TCGA-DR-A0ZM-01 9 134343102 134343102 C A PRRC2B Missense_Mutation p.P625T 0.24 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 9 135546243 135546243 C T GTF3C4 Silent p.I86I 0.24 TCGA-DR-A0ZM-01 9 136287545 136287545 C G ADAMTS13 5'UTR 0.22 TCGA-DR-A0ZM-01 9 136340663 136340663 G C SLC2A6 Silent p.L211L 0.23 TCGA-DR-A0ZM-01 9 138454714 138454714 G A PAEP Silent p.E95E 0.25 TCGA-DR-A0ZM-01 9 139313653 139313653 G C PMPCA Intron 0.29 TCGA-DR-A0ZM-01 9 139397773 139397773 G A NOTCH1 Silent p.V1676V 0.19 TCGA-DR-A0ZM-01 9 139418380 139418380 G A NOTCH1 Silent p.L64L 0.38 TCGA-DR-A0ZM-01 9 139743863 139743863 G C PHPT1 5'UTR 0.21 TCGA-DR-A0ZM-01 9 139744960 139744960 G A PHPT1 Intron 0.36 TCGA-DR-A0ZM-01 9 139929366 139929366 G C C9orf139 Missense_Mutation p.E145Q 0.23 tolerated_low_confidence(0.68) possibly_damaging(0.742) TCGA-DR-A0ZM-01 9 140349726 140349726 C T NSMF Silent p.R248R 0.28 TCGA-DR-A0ZM-01 9 20414065 20414065 G C MLLT3 Nonsense_Mutation p.S260* 0.23 TCGA-DR-A0ZM-01 9 214587 214587 C G C9orf66 Silent p.A270A 0.25 TCGA-DR-A0ZM-01 9 2837402 2837402 C G KIAA0020 Splice_Site p.X28_splice 0.18 TCGA-DR-A0ZM-01 9 3277378 3277378 G A RFX3 Missense_Mutation p.T312I 0.20 deleterious(0.03) benign(0.017) TCGA-DR-A0ZM-01 9 3277390 3277390 G C RFX3 Missense_Mutation p.S308C 0.17 tolerated(0.09) benign(0.022) TCGA-DR-A0ZM-01 9 34400903 34400903 C T FAM219A 3'UTR 0.38 TCGA-DR-A0ZM-01 9 35043372 35043372 C T C9orf131 Missense_Mutation p.S249L 0.21 tolerated(0.11) benign(0.288) TCGA-DR-A0ZM-01 9 37785042 37785042 C T EXOSC3 5'UTR 0.39 TCGA-DR-A0ZM-01 9 39086664 39086664 C G CNTNAP3 Intron 0.14 TCGA-DR-A0ZM-01 9 43815979 43815979 C G CNTNAP3B Missense_Mutation p.L245V 0.09 tolerated(0.08) benign(0.32) TCGA-DR-A0ZM-01 9 5089755 5089755 C A JAK2 Missense_Mutation p.Q885K 0.20 tolerated(0.35) possibly_damaging(0.779) TCGA-DR-A0ZM-01 9 5770130 5770130 G A KIAA1432 Silent p.L1156L 0.06 TCGA-DR-A0ZM-01 9 5774025 5774025 G C KIAA1432 Missense_Mutation p.E1351Q 0.28 tolerated(0.24) benign(0.006) TCGA-DR-A0ZM-01 9 6421009 6421009 C G UHRF2 Missense_Mutation p.S84C 0.19 deleterious(0.03) probably_damaging(0.991) TCGA-DR-A0ZM-01 9 70490008 70490008 C G CBWD5 Missense_Mutation p.E21Q 0.28 tolerated(0.16) possibly_damaging(0.617) TCGA-DR-A0ZM-01 9 73002605 73002605 C T KLF9 3'UTR 0.25 TCGA-DR-A0ZM-01 9 79952270 79952270 G C VPS13A Missense_Mutation p.K2065N 0.27 tolerated(0.09) benign(0.424) TCGA-DR-A0ZM-01 9 87285534 87285534 C A NTRK2 5'UTR 0.18 TCGA-DR-A0ZM-01 9 88203305 88203305 G C AGTPBP1 Silent p.L897L 0.31 TCGA-DR-A0ZM-01 9 95219736 95219736 C G ASPN Missense_Mutation p.R326T 0.20 tolerated(0.27) benign(0.001) TCGA-DR-A0ZM-01 9 95484983 95484983 C T BICD2 Silent p.E187E 0.23 TCGA-DR-A0ZM-01 9 95484988 95484988 C T BICD2 Missense_Mutation p.E186K 0.22 deleterious(0) probably_damaging(0.967) TCGA-DR-A0ZM-01 9 95610231 95610231 C A ZNF484 Nonsense_Mutation p.E282* 0.23 TCGA-DR-A0ZM-01 9 97741653 97741653 G C C9orf3 Missense_Mutation p.E641Q 0.25 tolerated(0.11) benign(0.007) TCGA-DR-A0ZM-01 9 98242341 98242341 C G PTCH1 Missense_Mutation p.G326A 0.20 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 9 99250527 99250527 G C HABP4 Missense_Mutation p.E386Q 0.21 deleterious(0.05) probably_damaging(0.911) TCGA-DR-A0ZM-01 X 101909941 101909941 C G GPRASP1 Nonsense_Mutation p.S367* 0.26 TCGA-DR-A0ZM-01 X 104463712 104463712 C T TEX13A Silent p.V388V 0.03 TCGA-DR-A0ZM-01 X 106844953 106844953 G C FRMPD3 Missense_Mutation p.Q1261H 0.13 deleterious(0.02) benign(0.028) TCGA-DR-A0ZM-01 X 106960130 106960130 T G TSC22D3 Intron 0.13 TCGA-DR-A0ZM-01 X 109247278 109247278 G C TMEM164 Missense_Mutation p.K92N 0.24 deleterious(0) probably_damaging(0.979) TCGA-DR-A0ZM-01 X 109695460 109695460 C G RGAG1 Missense_Mutation p.L539V 0.27 tolerated(0.24) possibly_damaging(0.648) TCGA-DR-A0ZM-01 X 110497608 110497608 C T CAPN6 Silent p.L63L 0.21 TCGA-DR-A0ZM-01 X 117053561 117053561 G C KLHL13 Missense_Mutation p.Q168E 0.23 deleterious(0.04) possibly_damaging(0.669) TCGA-DR-A0ZM-01 X 11790741 11790741 G T MSL3 Silent p.V461V 0.18 TCGA-DR-A0ZM-01 X 118143099 118143099 C G LONRF3 Nonsense_Mutation p.S514* 0.16 TCGA-DR-A0ZM-01 X 118676555 118676555 C T CXorf56 Silent p.V142V 0.23 TCGA-DR-A0ZM-01 X 118750442 118750442 G A SEPT6 3'Flank 0.21 TCGA-DR-A0ZM-01 X 123538975 123538975 G A TENM1 Missense_Mutation p.S1766L 0.27 deleterious(0.02) benign(0.029) TCGA-DR-A0ZM-01 X 132092453 132092453 G A HS6ST2 Missense_Mutation p.H60Y 0.38 deleterious_low_confidence(0.02) benign(0.05) TCGA-DR-A0ZM-01 X 135047196 135047196 G C MMGT1 Nonsense_Mutation p.S128* 0.23 TCGA-DR-A0ZM-01 X 147090178 147090178 C G FMR1NB Missense_Mutation p.I193M 0.25 tolerated(0.17) possibly_damaging(0.506) TCGA-DR-A0ZM-01 X 148798206 148798206 G A MAGEA11 Missense_Mutation p.E354K 0.18 deleterious(0.01) possibly_damaging(0.848) TCGA-DR-A0ZM-01 X 1497563 1497563 G C IL3RA Missense_Mutation p.E296Q 0.15 tolerated(0.11) possibly_damaging(0.737) TCGA-DR-A0ZM-01 X 150869355 150869355 C G PRRG3 Silent p.L182L 0.31 TCGA-DR-A0ZM-01 X 151900870 151900870 C G MAGEA12 5'UTR 0.23 TCGA-DR-A0ZM-01 X 152031145 152031145 C G NSDHL Silent p.L140L 0.19 TCGA-DR-A0ZM-01 X 15266972 15266972 G C ASB9 Silent p.L218L 0.15 TCGA-DR-A0ZM-01 X 153072748 153072748 C T PDZD4 Missense_Mutation p.E125K 0.37 deleterious(0.02) possibly_damaging(0.901) TCGA-DR-A0ZM-01 X 153281480 153281480 C G IRAK1 Intron 0.15 TCGA-DR-A0ZM-01 X 153296200 153296200 G A MECP2 Missense_Mutation p.S372L 0.31 deleterious(0.01) unknown(0) TCGA-DR-A0ZM-01 X 153296613 153296613 G A MECP2 Silent p.V234V 0.23 TCGA-DR-A0ZM-01 X 153461460 153461460 G A OPN1MW Missense_Mutation p.D342N 0.11 tolerated(0.1) possibly_damaging(0.603) TCGA-DR-A0ZM-01 X 154305476 154305476 C T BRCC3 Missense_Mutation p.S76F 0.23 deleterious(0.01) probably_damaging(1) TCGA-DR-A0ZM-01 X 15509413 15509413 G A PIR 5'UTR 0.26 TCGA-DR-A0ZM-01 X 18942509 18942509 G A PHKA2 Silent p.R568R 0.17 TCGA-DR-A0ZM-01 X 19049108 19049108 C T GPR64 Missense_Mutation p.D118N 0.27 tolerated_low_confidence(0.77) benign(0.027) TCGA-DR-A0ZM-01 X 22051181 22051181 C T PHEX Nonsense_Mutation p.R20* 0.25 TCGA-DR-A0ZM-01 X 22196456 22196456 G C PHEX Missense_Mutation p.D517H 0.06 tolerated(0.12) probably_damaging(0.999) TCGA-DR-A0ZM-01 X 229524 229524 C G GTPBP6 Missense_Mutation p.L46F 0.16 deleterious(0) probably_damaging(0.996) TCGA-DR-A0ZM-01 X 37300827 37300827 G A PRRG1 Intron 0.25 TCGA-DR-A0ZM-01 X 39932327 39932327 G T BCOR Missense_Mutation p.P758T 0.21 deleterious(0.01) benign(0.297) TCGA-DR-A0ZM-01 X 43515648 43515648 G A MAOA Missense_Mutation p.G20E 0.19 deleterious(0) probably_damaging(0.986) TCGA-DR-A0ZM-01 X 46522066 46522066 G A SLC9A7 Missense_Mutation p.A269V 0.15 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 X 47034434 47034434 C T RBM10 Silent p.F173F 0.23 TCGA-DR-A0ZM-01 X 47071825 47071825 G A UBA1 Missense_Mutation p.D823N 0.10 tolerated(0.11) benign(0) TCGA-DR-A0ZM-01 X 47106541 47106541 C G USP11 Missense_Mutation p.L824V 0.24 deleterious(0) probably_damaging(0.999) TCGA-DR-A0ZM-01 X 47307881 47307881 G C ZNF41 Missense_Mutation p.Q430E 0.22 deleterious(0) benign(0.247) TCGA-DR-A0ZM-01 X 47435781 47435781 C T SYN1 Nonsense_Mutation p.W335* 0.22 TCGA-DR-A0ZM-01 X 48371091 48371091 G C PORCN Missense_Mutation p.D224H 0.22 deleterious(0.02) possibly_damaging(0.835) TCGA-DR-A0ZM-01 X 48650370 48650370 G A GATA1 Missense_Mutation p.E114K 0.22 tolerated(0.75) benign(0.079) TCGA-DR-A0ZM-01 X 50028215 50028215 C G CCNB3 Missense_Mutation p.Q18E 0.20 deleterious(0.03) benign(0.042) TCGA-DR-A0ZM-01 X 50052681 50052681 G C CCNB3 Missense_Mutation p.L504F 0.16 tolerated(0.07) benign(0.379) TCGA-DR-A0ZM-01 X 50213605 50213605 C G DGKK RNA 0.14 TCGA-DR-A0ZM-01 X 51488004 51488004 G A GSPT2 Missense_Mutation p.D428N 0.05 tolerated(0.66) benign(0.035) TCGA-DR-A0ZM-01 X 53407550 53407550 G C SMC1A Silent p.V1203V 0.23 TCGA-DR-A0ZM-01 X 5821162 5821162 G A NLGN4X Silent p.L519L 0.23 TCGA-DR-A0ZM-01 X 6069406 6069406 G C NLGN4X Missense_Mutation p.I34M 0.21 tolerated(0.11) benign(0.185) TCGA-DR-A0ZM-01 X 67751726 67751726 C T YIPF6 Missense_Mutation p.S199F 0.17 deleterious(0) probably_damaging(0.998) TCGA-DR-A0ZM-01 X 69479359 69479359 G A P2RY4 Missense_Mutation p.P39L 0.32 deleterious(0) probably_damaging(0.997) TCGA-DR-A0ZM-01 X 69652906 69652906 G A GDPD2 Silent p.L581L 0.19 TCGA-DR-A0ZM-01 X 71426886 71426886 C G ERCC6L Missense_Mutation p.E577D 0.24 deleterious(0.04) benign(0.126) TCGA-DR-A0ZM-01 X 73043756 73043756 G A XIST RNA 0.19 TCGA-DR-A0ZM-01 X 73959275 73959275 C G KIAA2022 Missense_Mutation p.E1506Q 0.18 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-DR-A0ZM-01 X 77913090 77913090 C T ZCCHC5 Silent p.V276V 0.18 TCGA-DR-A0ZM-01 X 8507779 8507779 G C KAL1 Missense_Mutation p.H459D 0.22 tolerated(0.2) benign(0.443) TCGA-DR-A0ZM-01 X 9841743 9841743 G C SHROOM2 Missense_Mutation p.E73Q 0.25 deleterious(0) probably_damaging(0.96) TCGA-DS-A0VK-01 10 112839008 112839008 G A ADRA2A Silent p.V418V 0.28 TCGA-DS-A0VK-01 10 124672399 124672399 G T FAM24A Nonsense_Mutation p.E83* 0.04 TCGA-DS-A0VK-01 10 13386938 13386938 C T SEPHS1 Missense_Mutation p.E5K 0.46 tolerated(1) benign(0.001) TCGA-DS-A0VK-01 10 14870197 14870197 C T CDNF Missense_Mutation p.E64K 0.03 deleterious(0) possibly_damaging(0.845) TCGA-DS-A0VK-01 10 14976735 14976735 G A DCLRE1C Silent p.F168F 0.46 TCGA-DS-A0VK-01 10 17927340 17927340 C G MRC1L1 Silent p.V1014V 0.38 TCGA-DS-A0VK-01 10 35818947 35818947 C T CCNY Missense_Mutation p.H150Y 0.17 tolerated(0.07) benign(0.256) TCGA-DS-A0VK-01 10 69726539 69726539 C T HERC4 Silent p.Q609Q 0.48 TCGA-DS-A0VK-01 10 72298040 72298040 C T PALD1 Missense_Mutation p.P443L 0.45 tolerated(0.06) benign(0.013) TCGA-DS-A0VK-01 10 75672700 75672700 A T PLAU Missense_Mutation p.Y71F 0.48 tolerated(0.06) benign(0.126) TCGA-DS-A0VK-01 10 99161090 99161090 C G RRP12 5'UTR 0.56 TCGA-DS-A0VK-01 11 124310460 124310460 G A OR8B8 Silent p.V174V 0.53 TCGA-DS-A0VK-01 11 56409127 56409127 G A OR5AP2 Silent p.F263F 0.04 TCGA-DS-A0VK-01 11 65487785 65487785 C G RNASEH2C Silent p.S92S 0.34 TCGA-DS-A0VK-01 11 65637669 65637669 C T EFEMP2 Missense_Mutation p.C177Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-DS-A0VK-01 11 66618223 66618223 C T PC Missense_Mutation p.D799N 0.33 tolerated(0.18) probably_damaging(0.992) TCGA-DS-A0VK-01 11 67075201 67075201 C T SSH3 Missense_Mutation p.P262S 0.29 tolerated(0.47) benign(0.003) TCGA-DS-A0VK-01 11 74168589 74168589 G A KCNE3 Missense_Mutation p.T7M 0.20 tolerated_low_confidence(0.11) possibly_damaging(0.664) TCGA-DS-A0VK-01 12 100441413 100441413 C T UHRF1BP1L Missense_Mutation p.D1326N 0.06 deleterious(0.01) possibly_damaging(0.723) TCGA-DS-A0VK-01 12 104083711 104083711 G A STAB2 Missense_Mutation p.D1045N 0.03 tolerated(0.09) benign(0.017) TCGA-DS-A0VK-01 12 111162495 111162495 C T PPP1CC Missense_Mutation p.V165M 0.04 tolerated_low_confidence(0.07) benign(0.297) TCGA-DS-A0VK-01 12 123087422 123087422 G A KNTC1 Silent p.S1624S 0.26 TCGA-DS-A0VK-01 12 132529427 132529427 C T EP400 Missense_Mutation p.P2238L 0.27 unknown(0) TCGA-DS-A0VK-01 12 49230515 49230515 G A DDX23 Missense_Mutation p.S358F 0.29 deleterious(0) probably_damaging(0.957) TCGA-DS-A0VK-01 12 49420492 49420492 C T KMT2D Missense_Mutation p.R5086Q 0.31 unknown(0) TCGA-DS-A0VK-01 12 51584291 51584291 C T POU6F1 Silent p.R215R 0.04 TCGA-DS-A0VK-01 12 51639958 51639958 A G DAZAP2 3'Flank 0.27 TCGA-DS-A0VK-01 12 56091557 56091557 G A ITGA7 Missense_Mutation p.S448L 0.39 deleterious(0) probably_damaging(0.925) TCGA-DS-A0VK-01 12 56629341 56629341 C T SLC39A5 Intron 0.30 TCGA-DS-A0VK-01 12 56630255 56630255 C A SLC39A5 Missense_Mutation p.Q341K 0.35 tolerated(0.44) benign(0.17) TCGA-DS-A0VK-01 12 56630958 56630958 C T SLC39A5 Missense_Mutation p.S438L 0.24 deleterious(0) benign(0.186) TCGA-DS-A0VK-01 12 56631000 56631000 C T SLC39A5 Missense_Mutation p.S452F 0.24 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VK-01 13 32776660 32776660 C T FRY Silent p.F1338F 0.26 TCGA-DS-A0VK-01 13 67801613 67801613 T C PCDH9 Silent p.R320R 0.26 TCGA-DS-A0VK-01 14 23869468 23869468 C T MYH6 Silent p.E526E 0.29 TCGA-DS-A0VK-01 14 45693467 45693467 C G MIS18BP1 Missense_Mutation p.E775Q 0.32 deleterious(0.01) possibly_damaging(0.877) TCGA-DS-A0VK-01 14 55509864 55509864 G C SOCS4 Missense_Mutation p.K35N 0.29 deleterious(0) possibly_damaging(0.628) TCGA-DS-A0VK-01 14 71267429 71267429 C T MAP3K9 Missense_Mutation p.E259K 0.34 deleterious(0) benign(0.148) TCGA-DS-A0VK-01 14 92249418 92249418 C T TC2N 3'UTR 0.11 TCGA-DS-A0VK-01 15 100269463 100269463 C T LYSMD4 Silent p.L253L 0.35 TCGA-DS-A0VK-01 15 101719133 101719133 C G CHSY1 Missense_Mutation p.R290T 0.31 tolerated(0.25) benign(0.139) TCGA-DS-A0VK-01 15 79277490 79277490 C T RASGRF1 Silent p.V1107V 0.04 TCGA-DS-A0VK-01 15 83455755 83455755 C T FSD2 Missense_Mutation p.E130K 0.04 tolerated(0.07) benign(0.017) TCGA-DS-A0VK-01 16 24988547 24988547 C T ARHGAP17 Missense_Mutation p.E63K 0.21 deleterious(0.02) possibly_damaging(0.858) TCGA-DS-A0VK-01 16 56531748 56531748 G T BBS2 Silent p.I568I 0.36 TCGA-DS-A0VK-01 16 66995225 66995225 G A CES3 Silent p.V5V 0.11 TCGA-DS-A0VK-01 17 10248901 10248901 G A MYH13 Silent p.A432A 0.27 TCGA-DS-A0VK-01 17 15976884 15976884 C T NCOR1 Splice_Site p.X1224_splice 0.40 TCGA-DS-A0VK-01 17 1684631 1684631 C A SMYD4 Missense_Mutation p.M788I 0.34 deleterious(0) probably_damaging(0.933) TCGA-DS-A0VK-01 17 29553644 29553644 C T NF1 Silent p.L731L 0.33 TCGA-DS-A0VK-01 17 29554588 29554588 C G NF1 Missense_Mutation p.I791M 0.26 deleterious(0.01) probably_damaging(0.964) TCGA-DS-A0VK-01 17 29556206 29556206 C A NF1 Missense_Mutation p.S858Y 0.27 tolerated(0.93) benign(0.028) TCGA-DS-A0VK-01 17 33430470 33430470 C G RAD51L3-RFFL Intron 0.25 TCGA-DS-A0VK-01 17 3661017 3661017 C T ITGAE Missense_Mutation p.E335K 0.32 deleterious(0.04) probably_damaging(0.977) TCGA-DS-A0VK-01 17 48677083 48677083 C T CACNA1G Missense_Mutation p.R1185C 0.32 deleterious(0.02) benign(0.339) TCGA-DS-A0VK-01 17 7252323 7252323 C T ACAP1 Missense_Mutation p.S563F 0.26 tolerated(0.1) possibly_damaging(0.553) TCGA-DS-A0VK-01 17 7252471 7252471 C G ACAP1 Missense_Mutation p.I612M 0.28 tolerated(0.11) probably_damaging(0.991) TCGA-DS-A0VK-01 18 56587446 56587446 G A ZNF532 Missense_Mutation p.E643K 0.28 deleterious(0.02) possibly_damaging(0.483) TCGA-DS-A0VK-01 18 61390278 61390278 C G SERPINB11 Missense_Mutation p.S275C 0.43 deleterious(0.02) possibly_damaging(0.853) TCGA-DS-A0VK-01 18 8380291 8380291 C T PTPRM Intron 0.23 TCGA-DS-A0VK-01 19 13211489 13211489 C G LYL1 Missense_Mutation p.E137Q 0.19 deleterious(0) benign(0.368) TCGA-DS-A0VK-01 19 14554355 14554355 G A PKN1 Silent p.E138E 0.34 TCGA-DS-A0VK-01 19 17678289 17678289 C T COLGALT1 Silent p.V188V 0.36 TCGA-DS-A0VK-01 19 18557290 18557290 C T ELL Silent p.L511L 0.18 TCGA-DS-A0VK-01 19 2476585 2476585 C T GADD45B Missense_Mutation p.R35C 0.34 tolerated(0.66) benign(0.005) TCGA-DS-A0VK-01 19 35085427 35085427 C T SCGB2B2 Silent p.L14L 0.24 TCGA-DS-A0VK-01 19 37853929 37853929 A G HKR1 Missense_Mutation p.K411R 0.06 deleterious(0.04) probably_damaging(0.963) TCGA-DS-A0VK-01 19 4290699 4290699 G A SHD 3'UTR 0.21 TCGA-DS-A0VK-01 19 45165092 45165092 G C PVR 3'UTR 0.25 TCGA-DS-A0VK-01 19 45997610 45997610 C A RTN2 Missense_Mutation p.G210C 0.31 tolerated_low_confidence(0.07) benign(0.035) TCGA-DS-A0VK-01 19 46116846 46116846 C A EML2 Missense_Mutation p.D794Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-DS-A0VK-01 19 49259545 49259545 C T FGF21 Silent p.L18L 0.40 TCGA-DS-A0VK-01 19 50369688 50369688 C G PNKP Missense_Mutation p.D56H 0.03 deleterious(0.02) possibly_damaging(0.602) TCGA-DS-A0VK-01 19 50747551 50747551 G C MYH14 Missense_Mutation p.K389N 0.23 deleterious(0.01) possibly_damaging(0.848) TCGA-DS-A0VK-01 19 52714601 52714601 C T PPP2R1A Missense_Mutation p.S120L 0.32 deleterious(0.01) possibly_damaging(0.537) TCGA-DS-A0VK-01 19 53342696 53342696 G A ZNF468 3'UTR 0.26 TCGA-DS-A0VK-01 19 6732334 6732334 G A GPR108 Silent p.F355F 0.30 TCGA-DS-A0VK-01 1 109714534 109714534 G A KIAA1324 Missense_Mutation p.E172K 0.11 deleterious(0.01) probably_damaging(0.924) TCGA-DS-A0VK-01 1 152281070 152281070 C T FLG Missense_Mutation p.E2098K 0.34 benign(0.292) TCGA-DS-A0VK-01 1 152281894 152281894 C A FLG Missense_Mutation p.G1823V 0.31 probably_damaging(0.953) TCGA-DS-A0VK-01 1 153902843 153902843 C T DENND4B Missense_Mutation p.R1474Q 0.36 tolerated(0.33) benign(0.008) TCGA-DS-A0VK-01 1 158297954 158297954 G C CD1B 3'UTR 0.31 TCGA-DS-A0VK-01 1 183874076 183874076 G A RGL1 Silent p.Q516Q 0.42 TCGA-DS-A0VK-01 1 186292910 186292910 G A TPR Nonsense_Mutation p.R2069* 0.33 TCGA-DS-A0VK-01 1 201333443 201333443 G A TNNT2 Missense_Mutation p.R148W 0.45 deleterious(0) probably_damaging(0.979) TCGA-DS-A0VK-01 1 228486166 228486166 C T OBSCN Nonsense_Mutation p.R4320* 0.24 TCGA-DS-A0VK-01 1 32130808 32130808 C T COL16A1 Missense_Mutation p.G1174R 0.03 unknown(0) TCGA-DS-A0VK-01 1 32222827 32222827 C G BAI2 5'UTR 0.37 TCGA-DS-A0VK-01 1 36643631 36643631 G T MAP7D1 Nonsense_Mutation p.E513* 0.39 TCGA-DS-A0VK-01 1 39341324 39341324 G A GJA9 Silent p.L149L 0.30 TCGA-DS-A0VK-01 1 55317811 55317811 C G DHCR24 3'UTR 0.23 TCGA-DS-A0VK-01 20 23807192 23807192 C T CST2 Missense_Mutation p.D36N 0.43 tolerated(0.12) benign(0.038) TCGA-DS-A0VK-01 20 33577924 33577927 TGAG - MYH7B Frame_Shift_Del p.Y667* 0.36 TCGA-DS-A0VK-01 20 40084593 40084593 C T CHD6 Silent p.V952V 0.28 TCGA-DS-A0VK-01 20 62853251 62853251 G C MYT1 Missense_Mutation p.E749D 0.12 possibly_damaging(0.877) TCGA-DS-A0VK-01 21 22746206 22746206 C T NCAM2 Silent p.V356V 0.19 TCGA-DS-A0VK-01 21 40795190 40795190 C G LCA5L Missense_Mutation p.L183F 0.33 deleterious(0.02) probably_damaging(0.94) TCGA-DS-A0VK-01 21 43786545 43786545 G A TFF1 Silent p.L20L 0.06 TCGA-DS-A0VK-01 21 43867194 43867194 G A UBASH3A Missense_Mutation p.E626K 0.31 deleterious(0.02) benign(0.258) TCGA-DS-A0VK-01 22 23495275 23495275 G A RAB36 Missense_Mutation p.E161K 0.28 deleterious(0) probably_damaging(1) TCGA-DS-A0VK-01 22 23915359 23915359 G T IGLL1 3'UTR 0.24 TCGA-DS-A0VK-01 2 100185373 100185373 G A AFF3 Missense_Mutation p.R1000C 0.29 deleterious(0) benign(0.261) TCGA-DS-A0VK-01 2 101611992 101611992 G A NPAS2 Missense_Mutation p.R808Q 0.15 tolerated_low_confidence(0.11) unknown(0) TCGA-DS-A0VK-01 2 10263000 10263000 C T RRM2 Silent p.L85L 0.75 TCGA-DS-A0VK-01 2 109124158 109124158 A G GCC2 3'UTR 0.20 TCGA-DS-A0VK-01 2 120003197 120003216 CCCTGGCCACACGCCTGGTG - STEAP3 Frame_Shift_Del p.S52Wfs*56 0.29 TCGA-DS-A0VK-01 2 152359890 152359890 G C NEB Silent p.V7936V 0.24 TCGA-DS-A0VK-01 2 170022443 170022443 G C LRP2 Missense_Mutation p.H3919Q 0.23 benign(0.006) TCGA-DS-A0VK-01 2 170591579 170591579 C G KLHL23 Missense_Mutation p.P19A 0.10 tolerated(0.55) benign(0.012) TCGA-DS-A0VK-01 2 178098799 178098799 T A NFE2L2 Missense_Mutation p.E82D 0.40 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VK-01 2 1926313 1926313 C T MYT1L Missense_Mutation p.D410N 0.33 deleterious(0.03) possibly_damaging(0.481) TCGA-DS-A0VK-01 2 201440108 201440108 G C SGOL2 Missense_Mutation p.E1236Q 0.27 deleterious(0.03) possibly_damaging(0.819) TCGA-DS-A0VK-01 2 223789234 223789234 C T ACSL3 Nonsense_Mutation p.Q405* 0.21 TCGA-DS-A0VK-01 2 237272528 237272528 G C IQCA1 Missense_Mutation p.I588M 0.34 deleterious(0.02) possibly_damaging(0.648) TCGA-DS-A0VK-01 2 37295890 37295890 C T HEATR5B Missense_Mutation p.E371K 0.29 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VK-01 2 37596909 37596909 G A QPCT Missense_Mutation p.E269K 0.38 tolerated(0.64) benign(0.002) TCGA-DS-A0VK-01 2 51255079 51255079 G A NRXN1 Silent p.D111D 0.27 TCGA-DS-A0VK-01 2 56603037 56603037 C T CCDC85A Silent p.S513S 0.26 TCGA-DS-A0VK-01 2 56603038 56603038 C T CCDC85A Nonsense_Mutation p.Q514* 0.26 TCGA-DS-A0VK-01 2 86258468 86258468 C T POLR1A Silent p.E1521E 0.33 TCGA-DS-A0VK-01 2 96690050 96690050 G A GPAT2 Missense_Mutation p.P569S 0.09 deleterious(0.03) possibly_damaging(0.803) TCGA-DS-A0VK-01 3 10916770 10916770 C G SLC6A11 Missense_Mutation p.S294C 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-DS-A0VK-01 3 129236334 129236334 C T IFT122 Silent p.F1147F 0.23 TCGA-DS-A0VK-01 3 136574394 136574394 C T SLC35G2 Silent p.L364L 0.22 TCGA-DS-A0VK-01 3 137811366 137811366 C G DZIP1L Missense_Mutation p.Q243H 0.21 tolerated(0.06) probably_damaging(0.94) TCGA-DS-A0VK-01 3 141162660 141162660 G C ZBTB38 Missense_Mutation p.R477T 0.49 deleterious(0) probably_damaging(0.998) TCGA-DS-A0VK-01 3 141162767 141162767 G A ZBTB38 Missense_Mutation p.E513K 0.43 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VK-01 3 141164162 141164162 G C ZBTB38 Missense_Mutation p.E978Q 0.45 tolerated(0.14) possibly_damaging(0.447) TCGA-DS-A0VK-01 3 141644560 141644560 C G ATP1B3 3'UTR 0.48 TCGA-DS-A0VK-01 3 142180859 142180859 T G ATR Missense_Mutation p.D2372A 0.27 deleterious(0.01) possibly_damaging(0.811) TCGA-DS-A0VK-01 3 184026613 184026613 C T PSMD2 Missense_Mutation p.L888F 0.16 tolerated(0.07) benign(0.157) TCGA-DS-A0VK-01 3 38648201 38648201 G A SCN5A Missense_Mutation p.R367C 0.52 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VK-01 4 108953508 108953508 C T HADH Silent p.N245N 0.27 TCGA-DS-A0VK-01 4 115998171 115998171 G A NDST4 Missense_Mutation p.R8W 0.31 tolerated_low_confidence(0.05) possibly_damaging(0.556) TCGA-DS-A0VK-01 4 119951968 119951968 A C SYNPO2 Silent p.R680R 0.05 TCGA-DS-A0VK-01 4 126398366 126398366 C A FAT4 Missense_Mutation p.P4117Q 0.29 probably_damaging(0.989) TCGA-DS-A0VK-01 4 157693949 157693949 C T PDGFC Missense_Mutation p.D198N 0.06 deleterious(0.05) benign(0.297) TCGA-DS-A0VK-01 4 17805707 17805707 C A DCAF16 Nonsense_Mutation p.E20* 0.57 TCGA-DS-A0VK-01 4 187509796 187509796 C T FAT1 Missense_Mutation p.E4573K 0.06 benign(0.31) TCGA-DS-A0VK-01 4 68780365 68780365 C G TMPRSS11A Missense_Mutation p.D349H 0.33 tolerated(0.13) benign(0.103) TCGA-DS-A0VK-01 4 89390328 89390328 G A HERC5 Silent p.K385K 0.09 TCGA-DS-A0VK-01 5 134002535 134002535 G A SEC24A Silent p.V196V 0.40 TCGA-DS-A0VK-01 5 140755393 140755393 C T PCDHGA6 Silent p.S581S 0.51 TCGA-DS-A0VK-01 5 1466877 1466877 C T LPCAT1 Silent p.G469G 0.03 TCGA-DS-A0VK-01 5 150696422 150696422 C T SLC36A2 Missense_Mutation p.E470K 0.51 tolerated(0.9) benign(0) TCGA-DS-A0VK-01 5 98212254 98212254 G A CHD1 Silent p.F1082F 0.45 TCGA-DS-A0VK-01 6 107391958 107391958 G A BEND3 Missense_Mutation p.S146L 0.39 tolerated_low_confidence(0.05) benign(0.003) TCGA-DS-A0VK-01 6 2623874 2623874 G C C6orf195 Silent p.P61P 0.44 TCGA-DS-A0VK-01 6 26468224 26468224 C T BTN2A1 Missense_Mutation p.S344L 0.05 deleterious(0.03) probably_damaging(0.965) TCGA-DS-A0VK-01 6 32810860 32810860 C T PSMB8 Missense_Mutation p.E52K 0.55 tolerated(0.58) benign(0.002) TCGA-DS-A0VK-01 6 90396657 90396657 C G MDN1 Missense_Mutation p.E3846Q 0.11 probably_damaging(0.983) TCGA-DS-A0VK-01 6 96988513 96988513 C T UFL1 Nonsense_Mutation p.R421* 0.22 TCGA-DS-A0VK-01 7 100549721 100549721 C T MUC3A Missense_Mutation p.S101L 0.14 deleterious(0.01) unknown(0) TCGA-DS-A0VK-01 7 103008390 103008390 C G PSMC2 Missense_Mutation p.I397M 0.19 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VK-01 7 136700956 136700956 G A CHRM2 Silent p.K448K 0.11 TCGA-DS-A0VK-01 7 21603847 21603847 G A DNAH11 Silent p.L342L 0.32 TCGA-DS-A0VK-01 7 21827105 21827105 G A DNAH11 Silent p.L3283L 0.30 TCGA-DS-A0VK-01 7 44148893 44148893 G A AEBP1 Missense_Mutation p.R368Q 0.33 tolerated_low_confidence(0.32) benign(0.005) TCGA-DS-A0VK-01 7 44151872 44151872 C G AEBP1 Silent p.P723P 0.08 TCGA-DS-A0VK-01 7 66453398 66453398 T C SBDS Missense_Mutation p.N238S 0.36 tolerated(1) benign(0) TCGA-DS-A0VK-01 7 7472140 7472140 C T COL28A1 Silent p.P654P 0.21 TCGA-DS-A0VK-01 7 94057017 94057017 T C COL1A2 Missense_Mutation p.F1116L 0.20 unknown(0) TCGA-DS-A0VK-01 8 10466630 10466630 C T RP1L1 Missense_Mutation p.E1660K 0.45 unknown(0) TCGA-DS-A0VK-01 8 48830905 48830905 G A PRKDC Missense_Mutation p.R820W 0.16 possibly_damaging(0.888) TCGA-DS-A0VK-01 8 66539550 66539550 C T ARMC1 Silent p.P28P 0.33 TCGA-DS-A0VK-01 9 115221855 115221855 C T HSDL2 Missense_Mutation p.S381L 0.31 deleterious(0) benign(0.155) TCGA-DS-A0VK-01 9 123906317 123906317 C T CNTRL Missense_Mutation p.S1003F 0.32 probably_damaging(0.99) TCGA-DS-A0VK-01 9 124522191 124522191 C T DAB2IP Silent p.L187L 0.21 TCGA-DS-A0VK-01 9 125923338 125923338 G A STRBP Missense_Mutation p.S182L 0.34 deleterious(0.04) benign(0.001) TCGA-DS-A0VK-01 9 131185213 131185213 C G CERCAM Silent p.G88G 0.28 TCGA-DS-A0VK-01 9 27169490 27169490 C T TEK Missense_Mutation p.S164L 0.31 deleterious(0.01) possibly_damaging(0.737) TCGA-DS-A0VK-01 9 35685308 35685308 C T TPM2 Missense_Mutation p.G174E 0.11 deleterious(0.01) probably_damaging(1) TCGA-DS-A0VK-01 9 5923062 5923062 C T KIAA2026 Silent p.K978K 0.33 TCGA-DS-A0VK-01 9 6434113 6434113 C T UHRF2 Missense_Mutation p.T195M 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-DS-A0VK-01 X 125299507 125299507 G A DCAF12L2 Missense_Mutation p.P134L 0.05 deleterious(0) probably_damaging(0.979) TCGA-DS-A0VK-01 X 135427980 135427980 G A GPR112 Silent p.L705L 0.06 TCGA-DS-A0VK-01 X 144905814 144905814 G A SLITRK2 Missense_Mutation p.G624E 0.05 deleterious(0.01) probably_damaging(0.937) TCGA-DS-A0VK-01 X 22291584 22291584 C T ZNF645 Missense_Mutation p.P159L 0.45 tolerated(0.15) benign(0.207) TCGA-DS-A0VK-01 X 44942757 44942757 G A KDM6A Missense_Mutation p.V1113I 0.16 deleterious(0.05) benign(0.081) TCGA-DS-A0VK-01 X 69282720 69282720 G C OTUD6A Missense_Mutation p.E116Q 0.82 tolerated(0.09) possibly_damaging(0.468) TCGA-DS-A0VK-01 X 77528893 77528893 C T CYSLTR1 Missense_Mutation p.M117I 0.12 deleterious(0.01) possibly_damaging(0.823) TCGA-DS-A0VL-01 10 30602411 30602411 G C MTPAP 3'UTR 0.19 TCGA-DS-A0VL-01 11 1103266 1103266 G A MUC2 Silent p.S2672S 0.05 TCGA-DS-A0VL-01 11 1214870 1214870 C T MUC5AC RNA 0.27 TCGA-DS-A0VL-01 11 45975137 45975137 C T PHF21A Missense_Mutation p.E345K 0.10 tolerated(0.33) benign(0.002) TCGA-DS-A0VL-01 11 65268741 65268742 - C MALAT1 RNA 0.23 TCGA-DS-A0VL-01 11 78412896 78412896 G A TENM4 Silent p.L1588L 0.37 TCGA-DS-A0VL-01 11 92086050 92086050 C T FAT3 Missense_Mutation p.R258C 0.09 probably_damaging(0.999) TCGA-DS-A0VL-01 11 92088452 92088452 T C FAT3 Silent p.I1058I 0.25 TCGA-DS-A0VL-01 12 104725378 104725378 G C TXNRD1 Missense_Mutation p.E537Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VL-01 12 126128683 126128683 C T TMEM132B Missense_Mutation p.T495M 0.18 tolerated(0.34) probably_damaging(0.941) TCGA-DS-A0VL-01 12 52139775 52139775 G C SCN8A Missense_Mutation p.R696T 0.31 deleterious(0.01) possibly_damaging(0.799) TCGA-DS-A0VL-01 12 62895398 62895398 G A MON2 Missense_Mutation p.G237S 0.35 deleterious(0) probably_damaging(0.977) TCGA-DS-A0VL-01 12 86373207 86373207 C A MGAT4C Nonsense_Mutation p.G433* 0.15 TCGA-DS-A0VL-01 13 20637063 20637063 G C ZMYM2 Missense_Mutation p.D997H 0.21 deleterious(0) possibly_damaging(0.642) TCGA-DS-A0VL-01 14 103566829 103566829 G C EXOC3L4 Silent p.L91L 0.12 TCGA-DS-A0VL-01 14 50597312 50597312 C G SOS2 Missense_Mutation p.A1082P 0.10 tolerated(0.12) benign(0.005) TCGA-DS-A0VL-01 14 95670454 95670454 C G CLMN Missense_Mutation p.R411T 0.17 deleterious(0.01) possibly_damaging(0.735) TCGA-DS-A0VL-01 15 22833552 22833552 C T TUBGCP5 Missense_Mutation p.R10W 0.44 tolerated_low_confidence(0.14) benign(0) TCGA-DS-A0VL-01 15 32450794 32450794 G A CHRNA7 Silent p.E289E 0.10 TCGA-DS-A0VL-01 15 41859705 41859705 G C TYRO3 Missense_Mutation p.D311H 0.17 tolerated(0.25) benign(0.036) TCGA-DS-A0VL-01 15 43571969 43571969 C T TGM7 Missense_Mutation p.R511H 0.07 tolerated(0.56) benign(0.001) TCGA-DS-A0VL-01 15 44941174 44941174 G C SPG11 Missense_Mutation p.Q498E 0.19 deleterious(0) possibly_damaging(0.764) TCGA-DS-A0VL-01 15 72638962 72638962 G A HEXA Silent p.F412F 0.51 TCGA-DS-A0VL-01 15 78882360 78882360 G C CHRNA5 Missense_Mutation p.K209N 0.12 tolerated(0.11) possibly_damaging(0.9) TCGA-DS-A0VL-01 16 30456484 30456484 C T SEPHS2 Missense_Mutation p.E189K 0.22 benign(0.036) TCGA-DS-A0VL-01 16 31004047 31004047 G C STX1B 3'UTR 0.23 TCGA-DS-A0VL-01 16 57075481 57075481 C G NLRC5 Missense_Mutation p.H1008Q 0.44 deleterious(0.05) benign(0.257) TCGA-DS-A0VL-01 16 74999681 74999681 C G WDR59 Missense_Mutation p.V32L 0.14 tolerated(0.83) benign(0.027) TCGA-DS-A0VL-01 16 9858383 9858383 C T GRIN2A Silent p.A1006A 0.26 TCGA-DS-A0VL-01 17 37604118 37604118 C T MED1 Missense_Mutation p.R22Q 0.14 tolerated(0.05) possibly_damaging(0.602) TCGA-DS-A0VL-01 17 43351847 43351847 G A MAP3K14 RNA 0.18 TCGA-DS-A0VL-01 17 74533655 74533655 C G CYGB 5'UTR 0.21 TCGA-DS-A0VL-01 18 25570188 25570188 C T CDH2 Missense_Mutation p.V491I 0.31 tolerated(0.19) benign(0.006) TCGA-DS-A0VL-01 18 55020123 55020123 G A ST8SIA3 Missense_Mutation p.V16I 0.13 benign(0) TCGA-DS-A0VL-01 19 39219695 39219695 G A ACTN4 Silent p.V826V 0.17 TCGA-DS-A0VL-01 19 51169762 51169762 C G SHANK1 Missense_Mutation p.E1819Q 0.15 unknown(0) TCGA-DS-A0VL-01 19 5135504 5135504 C G KDM4B Missense_Mutation p.S747C 0.15 possibly_damaging(0.869) TCGA-DS-A0VL-01 19 51359632 51359632 C T KLK3 Silent p.L61L 0.09 TCGA-DS-A0VL-01 19 51361307 51361307 C G KLK3 Missense_Mutation p.R77G 0.09 tolerated(0.05) probably_damaging(0.988) TCGA-DS-A0VL-01 19 52955083 52955083 G A ZNF578 5'Flank 0.13 TCGA-DS-A0VL-01 19 7626141 7626141 G A PNPLA6 Missense_Mutation p.D1331N 0.50 tolerated(0.08) benign(0.009) TCGA-DS-A0VL-01 19 7987549 7987549 G A SNAPC2 Missense_Mutation p.S302N 0.12 tolerated(0.16) possibly_damaging(0.841) TCGA-DS-A0VL-01 19 9225923 9225923 C T OR7G1 Missense_Mutation p.E173K 0.16 tolerated(0.1) benign(0.21) TCGA-DS-A0VL-01 1 112002183 112002183 G A ATP5F1 Missense_Mutation p.M206I 0.19 tolerated(0.41) benign(0.182) TCGA-DS-A0VL-01 1 115142027 115142027 C T DENND2C Silent p.P717P 0.34 TCGA-DS-A0VL-01 1 120050039 120050039 C G HSD3B1 5'UTR 0.14 TCGA-DS-A0VL-01 1 153604234 153604234 G A S100A1 Missense_Mutation p.G68R 0.42 deleterious(0) possibly_damaging(0.573) TCGA-DS-A0VL-01 1 156907208 156907208 G A ARHGEF11 Nonsense_Mutation p.Q1425* 0.12 TCGA-DS-A0VL-01 1 167791359 167791359 C G ADCY10 Missense_Mutation p.E1397Q 0.12 tolerated(0.13) possibly_damaging(0.461) TCGA-DS-A0VL-01 1 184764870 184764870 G C FAM129A Silent p.L676L 0.08 TCGA-DS-A0VL-01 1 197072159 197072159 C T ASPM Silent p.Q2074Q 0.03 TCGA-DS-A0VL-01 1 203693066 203693066 C G ATP2B4 Missense_Mutation p.Q1028E 0.10 deleterious(0.03) benign(0.412) TCGA-DS-A0VL-01 1 215848679 215848679 G A USH2A Missense_Mutation p.R4192C 0.11 probably_damaging(0.977) TCGA-DS-A0VL-01 1 27875174 27875174 C T AHDC1 Silent p.Q1151Q 0.15 TCGA-DS-A0VL-01 1 44433064 44433064 C T IPO13 Silent p.F897F 0.11 TCGA-DS-A0VL-01 20 33356297 33356297 C A NCOA6 Nonsense_Mutation p.E162* 0.34 TCGA-DS-A0VL-01 20 37356217 37356217 C T SLC32A1 Silent p.Y171Y 0.20 TCGA-DS-A0VL-01 21 10942949 10942949 C T TPTE Missense_Mutation p.R213K 0.10 tolerated(0.64) benign(0.105) TCGA-DS-A0VL-01 22 19839849 19839849 G T C22orf29 5'UTR 0.12 TCGA-DS-A0VL-01 22 21354220 21354220 C T THAP7 Silent p.L293L 0.11 TCGA-DS-A0VL-01 22 36690135 36690136 - A MYH9 Intron 0.37 TCGA-DS-A0VL-01 22 40803462 40803462 G A SGSM3 Missense_Mutation p.E472K 0.10 deleterious(0.03) benign(0.122) TCGA-DS-A0VL-01 22 41999352 41999352 A G DESI1 Silent p.C108C 0.19 TCGA-DS-A0VL-01 2 179170824 179170824 G C OSBPL6 5'UTR 0.69 TCGA-DS-A0VL-01 2 202136259 202136259 C G CASP8 Nonsense_Mutation p.S168* 0.17 TCGA-DS-A0VL-01 2 202149710 202149710 G A CASP8 Missense_Mutation p.G384D 0.04 deleterious(0) probably_damaging(1) TCGA-DS-A0VL-01 2 219754750 219754750 G A WNT10A Missense_Mutation p.V141M 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-DS-A0VL-01 2 74751187 74751187 C T DQX1 Missense_Mutation p.E227K 0.24 tolerated(0.44) benign(0.001) TCGA-DS-A0VL-01 2 85982063 85982063 G C ATOH8 Missense_Mutation p.E251Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-DS-A0VL-01 2 86259429 86259429 G C POLR1A Missense_Mutation p.S1413C 0.15 deleterious(0) probably_damaging(0.935) TCGA-DS-A0VL-01 3 100170714 100170714 G C LNP1 Missense_Mutation p.R103T 0.09 deleterious(0.02) possibly_damaging(0.57) TCGA-DS-A0VL-01 3 121414091 121414091 T G GOLGB1 Missense_Mutation p.E1760A 0.36 possibly_damaging(0.89) TCGA-DS-A0VL-01 3 160951234 160951234 G A NMD3 Silent p.K108K 0.07 TCGA-DS-A0VL-01 3 184800822 184800822 C T C3orf70 Silent p.V242V 0.05 TCGA-DS-A0VL-01 3 49694757 49694757 G A BSN Missense_Mutation p.E2590K 0.08 unknown(0) TCGA-DS-A0VL-01 3 51697389 51697389 G A RAD54L2 Missense_Mutation p.D1453N 0.13 tolerated_low_confidence(0.46) benign(0.048) TCGA-DS-A0VL-01 4 41016312 41016312 G C APBB2 Silent p.L41L 0.30 TCGA-DS-A0VL-01 4 44691410 44691410 C T GUF1 Silent p.L396L 0.53 TCGA-DS-A0VL-01 5 140262124 140262124 G A PCDHA13 Missense_Mutation p.D91N 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-DS-A0VL-01 6 142737195 142737195 G T GPR126 Missense_Mutation p.G978C 0.12 deleterious(0) probably_damaging(1) TCGA-DS-A0VL-01 6 150157417 150157417 C G LRP11 Missense_Mutation p.K352N 0.22 deleterious(0.03) possibly_damaging(0.859) TCGA-DS-A0VL-01 7 100676739 100676739 C G MUC17 Nonsense_Mutation p.S681* 0.15 TCGA-DS-A0VL-01 7 103193976 103193976 C T RELN Missense_Mutation p.E2002K 0.16 tolerated(0.23) probably_damaging(0.958) TCGA-DS-A0VL-01 7 122634943 122634943 C T TAS2R16 Missense_Mutation p.G249D 0.13 tolerated(0.59) benign(0.016) TCGA-DS-A0VL-01 7 148963515 148963515 C T ZNF783 Silent p.S38S 0.08 TCGA-DS-A0VL-01 7 5401610 5401610 G A TNRC18 Missense_Mutation p.R1484W 0.28 probably_damaging(0.997) TCGA-DS-A0VL-01 7 92027863 92027863 A G ANKIB1 Missense_Mutation p.D957G 0.11 tolerated_low_confidence(0.1) benign(0.011) TCGA-DS-A0VL-01 7 99696993 99696993 C A MCM7 Nonsense_Mutation p.E104* 0.16 TCGA-DS-A0VL-01 8 124042857 124042857 G A DERL1 Nonsense_Mutation p.R85* 0.44 TCGA-DS-A0VL-01 8 42256271 42256271 A G VDAC3 Silent p.K54K 0.28 TCGA-DS-A0VL-01 8 61765871 61765871 C T CHD7 Missense_Mutation p.T2196I 0.25 benign(0.034) TCGA-DS-A0VL-01 9 130486698 130486698 C G TTC16 Intron 0.20 TCGA-DS-A0VL-01 9 139302311 139302311 C T SDCCAG3 Silent p.S123S 0.14 TCGA-DS-A0VL-01 9 140669695 140669695 C G EHMT1 Missense_Mutation p.F594L 0.10 deleterious(0) probably_damaging(0.997) TCGA-DS-A0VL-01 X 38146175 38146175 C G RPGR Missense_Mutation p.E693Q 0.18 unknown(0) TCGA-DS-A0VL-01 X 48547408 48547408 C A WAS Silent p.R431R 0.29 TCGA-DS-A0VL-01 X 53278057 53278057 C G IQSEC2 Missense_Mutation p.E769Q 0.31 deleterious(0) possibly_damaging(0.835) TCGA-DS-A0VL-01 X 54324625 54324625 C T WNK3 Missense_Mutation p.E461K 0.25 deleterious(0) probably_damaging(0.992) TCGA-DS-A0VM-01 10 104139678 104139678 G A GBF1 Silent p.E1614E 0.31 TCGA-DS-A0VM-01 10 105810396 105810396 C G COL17A1 Missense_Mutation p.G704A 0.03 unknown(0) TCGA-DS-A0VM-01 10 115602142 115602142 G A DCLRE1A Silent p.V875V 0.28 TCGA-DS-A0VM-01 10 124345695 124345695 G T DMBT1 Missense_Mutation p.D527Y 0.62 deleterious(0) unknown(0) TCGA-DS-A0VM-01 10 133106525 133106525 G A TCERG1L Missense_Mutation p.P207S 0.37 tolerated(0.08) benign(0.293) TCGA-DS-A0VM-01 10 135125334 135125334 C A ZNF511 Silent p.I223I 0.29 TCGA-DS-A0VM-01 10 135125361 135125361 C T ZNF511 Intron 0.32 TCGA-DS-A0VM-01 10 14978589 14978589 C T DCLRE1C Missense_Mutation p.E104K 0.30 deleterious(0.03) probably_damaging(0.93) TCGA-DS-A0VM-01 10 27537598 27537598 C T RP11-85G18.6 Intron 0.27 TCGA-DS-A0VM-01 10 32854533 32854533 G A CCDC7 Silent p.L394L 0.27 TCGA-DS-A0VM-01 10 43696186 43696186 C T RASGEF1A Missense_Mutation p.A204T 0.31 tolerated(0.54) benign(0) TCGA-DS-A0VM-01 10 45878011 45878011 G A ALOX5 Silent p.L77L 0.34 TCGA-DS-A0VM-01 10 70547683 70547683 G A CCAR1 Splice_Site p.X961_splice 0.29 TCGA-DS-A0VM-01 10 72633330 72633330 C T SGPL1 Missense_Mutation p.R428C 0.30 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VM-01 11 103026188 103026188 C G DYNC2H1 Silent p.L1234L 0.22 TCGA-DS-A0VM-01 11 113558959 113558959 G C TMPRSS5 3'UTR 0.67 TCGA-DS-A0VM-01 11 113698046 113698046 C T USP28 Missense_Mutation p.E366K 0.25 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VM-01 11 121491799 121491799 C G SORL1 Silent p.L1972L 0.32 TCGA-DS-A0VM-01 11 18736049 18736049 C G IGSF22 Missense_Mutation p.E552Q 0.65 tolerated(0.1) possibly_damaging(0.451) TCGA-DS-A0VM-01 11 30352607 30352607 G C ARL14EP Missense_Mutation p.D38H 0.67 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-DS-A0VM-01 11 46780913 46780913 C G CKAP5 Missense_Mutation p.E1492Q 0.27 tolerated(0.14) possibly_damaging(0.904) TCGA-DS-A0VM-01 11 46783966 46783966 G A CKAP5 Intron 0.33 TCGA-DS-A0VM-01 11 46784554 46784554 G C CKAP5 Missense_Mutation p.S1288C 0.41 deleterious(0) possibly_damaging(0.619) TCGA-DS-A0VM-01 11 46784576 46784576 G A CKAP5 Missense_Mutation p.H1281Y 0.41 deleterious(0.02) probably_damaging(0.916) TCGA-DS-A0VM-01 11 55340452 55340452 G A OR4C16 Silent p.V283V 0.24 TCGA-DS-A0VM-01 11 55432918 55432918 C T OR4C6 Silent p.L92L 0.33 TCGA-DS-A0VM-01 11 57947066 57947066 C T OR9Q1 Silent p.L50L 0.31 TCGA-DS-A0VM-01 11 71249659 71249659 G C KRTAP5-8 Missense_Mutation p.K186N 0.37 deleterious_low_confidence(0) unknown(0) TCGA-DS-A0VM-01 11 77590061 77590061 G A INTS4 Silent p.I942I 0.35 TCGA-DS-A0VM-01 11 77614602 77614602 G A INTS4 Missense_Mutation p.S694L 0.27 tolerated(0.23) benign(0.002) TCGA-DS-A0VM-01 11 8246193 8246193 G A LMO1 Silent p.L147L 0.43 TCGA-DS-A0VM-01 11 82880510 82880510 C T PCF11 Nonsense_Mutation p.Q1045* 0.33 TCGA-DS-A0VM-01 11 94192676 94192676 C T MRE11A Silent p.E466E 0.41 TCGA-DS-A0VM-01 12 10601865 10601865 G A KLRC1 Silent p.L154L 0.31 TCGA-DS-A0VM-01 12 110345389 110345389 G A TCHP Missense_Mutation p.R195Q 0.36 deleterious(0.04) benign(0.236) TCGA-DS-A0VM-01 12 111954009 111954009 G A ATXN2 Missense_Mutation p.H602Y 0.36 probably_damaging(0.993) TCGA-DS-A0VM-01 12 112846139 112846139 C T RPL6 Missense_Mutation p.E81K 0.33 tolerated(0.11) possibly_damaging(0.458) TCGA-DS-A0VM-01 12 117993045 117993045 G A KSR2 Silent p.L483L 0.28 TCGA-DS-A0VM-01 12 128899683 128899683 G A TMEM132C Silent p.G164G 0.21 TCGA-DS-A0VM-01 12 130827568 130827568 C T PIWIL1 Nonsense_Mutation p.Q38* 0.35 TCGA-DS-A0VM-01 12 131360494 131360494 C T RAN 3'UTR 0.35 TCGA-DS-A0VM-01 12 14659187 14659187 G T PLBD1 Missense_Mutation p.P463H 0.35 deleterious(0) probably_damaging(0.968) TCGA-DS-A0VM-01 12 22487226 22487226 G A ST8SIA1 5'UTR 0.22 TCGA-DS-A0VM-01 12 32735220 32735220 C T FGD4 Missense_Mutation p.A140V 0.31 tolerated_low_confidence(0.21) benign(0.003) TCGA-DS-A0VM-01 12 40728939 40728939 C G LRRK2 Silent p.L1976L 0.34 TCGA-DS-A0VM-01 12 4848368 4848368 C T GALNT8 Silent p.L183L 0.29 TCGA-DS-A0VM-01 12 50027729 50027729 C - PRPF40B Frame_Shift_Del p.P224Hfs*86 0.25 TCGA-DS-A0VM-01 12 52159725 52159725 G C SCN8A Missense_Mutation p.E939Q 0.28 deleterious(0) probably_damaging(0.983) TCGA-DS-A0VM-01 12 53722969 53722969 G C SP7 Nonsense_Mutation p.S86* 0.34 TCGA-DS-A0VM-01 12 53723062 53723062 G A SP7 Missense_Mutation p.S55L 0.35 tolerated(0.46) benign(0.362) TCGA-DS-A0VM-01 12 53823280 53823280 G A AMHR2 Silent p.Q337Q 0.25 TCGA-DS-A0VM-01 12 54428265 54428265 G C HOXC5 Missense_Mutation p.E220Q 0.34 tolerated_low_confidence(0.09) possibly_damaging(0.727) TCGA-DS-A0VM-01 12 54447709 54447709 G C HOXC4 Translation_Start_Site p.M1? 0.36 deleterious(0.02) possibly_damaging(0.827) TCGA-DS-A0VM-01 12 56625235 56625235 G A SLC39A5 Silent p.A59A 0.42 TCGA-DS-A0VM-01 12 57578643 57578643 G A LRP1 Missense_Mutation p.D2070N 0.42 probably_damaging(0.998) TCGA-DS-A0VM-01 12 57861263 57861263 C T GLI1 Missense_Mutation p.R354W 0.10 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VM-01 12 57923041 57923041 G A MBD6 3'UTR 0.25 TCGA-DS-A0VM-01 12 57984968 57984968 G C PIP4K2C 5'Flank 0.19 TCGA-DS-A0VM-01 12 58002422 58002422 C T DTX3 Silent p.L290L 0.42 TCGA-DS-A0VM-01 12 65115473 65115473 C T GNS Missense_Mutation p.D441N 0.32 tolerated(0.07) possibly_damaging(0.549) TCGA-DS-A0VM-01 12 66696510 66696510 G A HELB Missense_Mutation p.D43N 0.30 deleterious(0.01) probably_damaging(1) TCGA-DS-A0VM-01 12 6948234 6948234 G A LEPREL2 Nonsense_Mutation p.W658* 0.36 TCGA-DS-A0VM-01 12 71526553 71526553 G C TSPAN8 Missense_Mutation p.Q166E 0.29 tolerated(0.69) benign(0.006) TCGA-DS-A0VM-01 12 7637945 7637945 A G CD163 Silent p.F842F 0.32 TCGA-DS-A0VM-01 13 42830423 42830423 C T FHP1 RNA 0.43 TCGA-DS-A0VM-01 13 42830663 42830663 C T FHP1 RNA 0.36 TCGA-DS-A0VM-01 13 58208026 58208026 C T PCDH17 Missense_Mutation p.S449F 0.60 tolerated(0.48) benign(0.005) TCGA-DS-A0VM-01 14 106306784 106306784 G A IGHD Nonsense_Mutation p.Q349* 0.20 TCGA-DS-A0VM-01 14 19553571 19553571 C T POTEG Missense_Mutation p.S52F 0.06 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DS-A0VM-01 14 35243591 35243591 C G BAZ1A Missense_Mutation p.R980T 0.30 deleterious(0) possibly_damaging(0.879) TCGA-DS-A0VM-01 14 36333125 36333125 C G BRMS1L Missense_Mutation p.F196L 0.04 tolerated(0.86) benign(0.006) TCGA-DS-A0VM-01 14 55650367 55650367 G A DLGAP5 Nonsense_Mutation p.R115* 0.38 TCGA-DS-A0VM-01 14 67847454 67847454 G C EIF2S1 Missense_Mutation p.L184F 0.39 deleterious(0.01) probably_damaging(0.996) TCGA-DS-A0VM-01 14 81259400 81259400 G A CEP128 Nonsense_Mutation p.R422* 0.38 TCGA-DS-A0VM-01 14 88892580 88892580 C G SPATA7 Nonsense_Mutation p.S126* 0.22 TCGA-DS-A0VM-01 14 89039025 89039025 G A ZC3H14 Missense_Mutation p.D179N 0.32 deleterious(0.01) possibly_damaging(0.839) TCGA-DS-A0VM-01 14 94152932 94152932 G A UNC79 Silent p.A2140A 0.16 TCGA-DS-A0VM-01 15 100695466 100695466 G C ADAMTS17 Nonsense_Mutation p.S414* 0.38 TCGA-DS-A0VM-01 15 27222246 27222246 C T GABRG3 Missense_Mutation p.L51F 0.40 deleterious(0) probably_damaging(0.998) TCGA-DS-A0VM-01 15 31197561 31197561 G A FAN1 Missense_Mutation p.R232K 0.31 tolerated(0.8) benign(0.001) TCGA-DS-A0VM-01 15 35082478 35082478 G C ACTC1 3'UTR 0.44 TCGA-DS-A0VM-01 15 40099335 40099335 G A GPR176 Silent p.I99I 0.36 TCGA-DS-A0VM-01 15 48414129 48414129 A G SLC24A5 Missense_Mutation p.D66G 0.31 tolerated(0.05) benign(0.003) TCGA-DS-A0VM-01 15 48703267 48703267 C T FBN1 Missense_Mutation p.E2846K 0.39 benign(0.058) TCGA-DS-A0VM-01 15 52543640 52543640 C G MYO5C Missense_Mutation p.E537Q 0.08 tolerated(0.56) benign(0.439) TCGA-DS-A0VM-01 15 52671836 52671836 C T MYO5A Missense_Mutation p.E732K 0.29 tolerated(0.11) possibly_damaging(0.714) TCGA-DS-A0VM-01 15 55652788 55652788 C A CCPG1 Missense_Mutation p.A395S 0.20 tolerated(0.21) benign(0.312) TCGA-DS-A0VM-01 15 56686955 56686955 G C TEX9 Missense_Mutation p.E251Q 0.39 deleterious(0.02) probably_damaging(0.942) TCGA-DS-A0VM-01 15 64496789 64496789 C G CSNK1G1 Splice_Site p.X284_splice 0.37 TCGA-DS-A0VM-01 15 66048590 66048590 C G DENND4A Missense_Mutation p.D67H 0.29 deleterious(0) possibly_damaging(0.832) TCGA-DS-A0VM-01 15 73889684 73889684 C G NPTN Missense_Mutation p.E40Q 0.35 tolerated(1) probably_damaging(0.984) TCGA-DS-A0VM-01 15 74948272 74948272 C T EDC3 Missense_Mutation p.G208R 0.35 tolerated(0.08) probably_damaging(0.959) TCGA-DS-A0VM-01 15 75335866 75335866 G A PPCDC Missense_Mutation p.D74N 0.16 deleterious(0.04) benign(0.058) TCGA-DS-A0VM-01 15 90190075 90190075 C G KIF7 Missense_Mutation p.E592Q 0.29 tolerated(0.31) benign(0.005) TCGA-DS-A0VM-01 15 99500353 99500353 C T IGF1R Silent p.I1262I 0.38 TCGA-DS-A0VM-01 15 99500356 99500356 C A IGF1R Silent p.I1263I 0.34 TCGA-DS-A0VM-01 16 11770188 11770188 G A SNN 3'UTR 0.34 TCGA-DS-A0VM-01 16 23224213 23224213 G C SCNN1G Missense_Mutation p.E477Q 0.33 deleterious(0.01) possibly_damaging(0.817) TCGA-DS-A0VM-01 16 24166139 24166139 G A PRKCB Silent p.P400P 0.34 TCGA-DS-A0VM-01 16 24831599 24831599 G T TNRC6A Missense_Mutation p.Q1740H 0.32 deleterious(0.05) probably_damaging(0.99) TCGA-DS-A0VM-01 16 2812813 2812813 C G SRRM2 Missense_Mutation p.L762V 0.34 unknown(0) TCGA-DS-A0VM-01 16 29922489 29922489 G A KCTD13 Missense_Mutation p.S188L 0.22 deleterious(0) probably_damaging(0.959) TCGA-DS-A0VM-01 16 30081308 30081308 G A ALDOA Silent p.E373E 0.28 TCGA-DS-A0VM-01 16 30485563 30485563 C T ITGAL Silent p.F36F 0.40 TCGA-DS-A0VM-01 16 30721400 30721400 G A SRCAP Missense_Mutation p.R362Q 0.37 unknown(0) TCGA-DS-A0VM-01 16 30723240 30723240 C T SRCAP Missense_Mutation p.S526F 0.39 unknown(0) TCGA-DS-A0VM-01 16 30723395 30723395 C G SRCAP Missense_Mutation p.L578V 0.27 unknown(0) TCGA-DS-A0VM-01 16 436993 436993 C G Z97634.3 Intron 0.25 TCGA-DS-A0VM-01 16 46655178 46655178 G A SHCBP1 Silent p.L32L 0.22 TCGA-DS-A0VM-01 16 57953058 57953058 G C CNGB1 Missense_Mutation p.F634L 0.34 tolerated(0.06) benign(0.109) TCGA-DS-A0VM-01 16 67209152 67209152 C G NOL3 3'UTR 0.29 TCGA-DS-A0VM-01 16 67288978 67288978 C T SLC9A5 Missense_Mutation p.S182L 0.33 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VM-01 16 67432778 67432778 G C ZDHHC1 Silent p.V200V 0.34 TCGA-DS-A0VM-01 16 67688786 67688786 G A RLTPR Missense_Mutation p.E1230K 0.37 deleterious(0) possibly_damaging(0.84) TCGA-DS-A0VM-01 16 67986291 67986291 G A SLC12A4 Missense_Mutation p.S240L 0.30 tolerated(0.06) benign(0.003) TCGA-DS-A0VM-01 16 70190480 70190480 G C PDPR Missense_Mutation p.D780H 0.21 deleterious(0.02) benign(0.367) TCGA-DS-A0VM-01 16 70498930 70498930 G C FUK Intron 0.43 TCGA-DS-A0VM-01 16 70843797 70843797 C T HYDIN Silent p.T4924T 0.04 TCGA-DS-A0VM-01 16 72821171 72821171 G A ZFHX3 Silent p.L3668L 0.35 TCGA-DS-A0VM-01 16 81190478 81190478 G A PKD1L2 RNA 0.35 TCGA-DS-A0VM-01 17 10204258 10204258 C T MYH13 3'UTR 0.07 TCGA-DS-A0VM-01 17 12899993 12899993 C T ELAC2 Silent p.T510T 0.16 TCGA-DS-A0VM-01 17 26942204 26942204 C T KIAA0100 Missense_Mutation p.E2196K 0.33 deleterious_low_confidence(0) benign(0.038) TCGA-DS-A0VM-01 17 27020847 27020847 G A SUPT6H Missense_Mutation p.R1256Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-DS-A0VM-01 17 27251153 27251153 C A PHF12 Missense_Mutation p.R163S 0.31 tolerated(0.33) benign(0.243) TCGA-DS-A0VM-01 17 32904624 32904624 G A C17orf102 Silent p.I142I 0.29 TCGA-DS-A0VM-01 17 37571569 37571569 C T MED1 Missense_Mutation p.E441K 0.33 deleterious(0) possibly_damaging(0.659) TCGA-DS-A0VM-01 17 38974699 38974699 C G KRT10 3'UTR 0.12 TCGA-DS-A0VM-01 17 40714664 40714664 C T COASY Silent p.L37L 0.38 TCGA-DS-A0VM-01 17 45247376 45247376 C A CDC27 Missense_Mutation p.G95V 0.21 deleterious(0.01) possibly_damaging(0.687) TCGA-DS-A0VM-01 17 56399716 56399716 G A BZRAP1 Missense_Mutation p.R459W 0.32 deleterious(0.02) possibly_damaging(0.841) TCGA-DS-A0VM-01 17 61466879 61466879 G A TANC2 Missense_Mutation p.V935M 0.36 tolerated(0.16) benign(0.01) TCGA-DS-A0VM-01 17 64880840 64880840 G A CACNG5 Intron 0.35 TCGA-DS-A0VM-01 17 7099654 7099654 C G DLG4 Splice_Site p.X439_splice 0.49 TCGA-DS-A0VM-01 17 72832424 72832424 C T TMEM104 Silent p.F363F 0.30 TCGA-DS-A0VM-01 17 72862305 72862305 C T FDXR Missense_Mutation p.C195Y 0.13 tolerated(1) benign(0) TCGA-DS-A0VM-01 17 73559178 73559178 C T LLGL2 Silent p.I204I 0.47 TCGA-DS-A0VM-01 17 7357785 7357785 C G CHRNB1 Silent p.L330L 0.31 TCGA-DS-A0VM-01 17 73838975 73838975 C T UNC13D Silent p.V117V 0.34 TCGA-DS-A0VM-01 17 7804195 7804195 C T CHD3 Nonsense_Mutation p.R1061* 0.31 TCGA-DS-A0VM-01 17 78332128 78332128 C T RNF213 Silent p.L3635L 0.31 TCGA-DS-A0VM-01 17 78355466 78355466 C T RNF213 Silent p.I4639I 0.37 TCGA-DS-A0VM-01 17 80038078 80038078 C T FASN Missense_Mutation p.E2362K 0.27 deleterious(0.04) possibly_damaging(0.796) TCGA-DS-A0VM-01 18 20573283 20573283 C A RBBP8 Nonsense_Mutation p.S498* 0.40 TCGA-DS-A0VM-01 18 20573291 20573291 C T RBBP8 Nonsense_Mutation p.Q501* 0.39 TCGA-DS-A0VM-01 18 22805425 22805425 A C ZNF521 Missense_Mutation p.H819Q 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-DS-A0VM-01 18 2740770 2740770 C T SMCHD1 Missense_Mutation p.S1195L 0.28 tolerated(0.12) benign(0.021) TCGA-DS-A0VM-01 18 29784241 29784241 C G MEP1B Silent p.L155L 0.43 TCGA-DS-A0VM-01 18 50936959 50936959 C G DCC Missense_Mutation p.R1025G 0.26 deleterious(0) probably_damaging(0.979) TCGA-DS-A0VM-01 18 56203851 56203851 C T ALPK2 Missense_Mutation p.G1190R 0.29 tolerated(0.27) benign(0.317) TCGA-DS-A0VM-01 18 7049150 7049150 C G LAMA1 Missense_Mutation p.R232T 0.32 deleterious(0) probably_damaging(1) TCGA-DS-A0VM-01 18 72186318 72186318 G A CNDP2 Missense_Mutation p.E449K 0.25 deleterious(0) probably_damaging(1) TCGA-DS-A0VM-01 19 12059989 12059989 C T ZNF700 Missense_Mutation p.H384Y 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-DS-A0VM-01 19 12461533 12461533 C T ZNF442 Missense_Mutation p.G289E 0.52 deleterious(0.02) probably_damaging(1) TCGA-DS-A0VM-01 19 1510233 1510233 A G ADAMTSL5 Missense_Mutation p.F93L 0.22 deleterious(0) probably_damaging(0.986) TCGA-DS-A0VM-01 19 15379752 15379752 G T BRD4 Missense_Mutation p.F129L 0.34 unknown(0) TCGA-DS-A0VM-01 19 16495997 16495997 G A EPS15L1 Silent p.F730F 0.30 TCGA-DS-A0VM-01 19 23544483 23544483 G C ZNF91 Missense_Mutation p.P433R 0.28 deleterious(0) benign(0.109) TCGA-DS-A0VM-01 19 33587166 33587166 C T GPATCH1 Silent p.V222V 0.40 TCGA-DS-A0VM-01 19 36106006 36106006 C T HAUS5 Silent p.L94L 0.26 TCGA-DS-A0VM-01 19 36431465 36431465 G A LRFN3 Missense_Mutation p.E380K 0.30 deleterious(0.03) possibly_damaging(0.665) TCGA-DS-A0VM-01 19 40485721 40485721 C T PSMC4 Intron 0.32 TCGA-DS-A0VM-01 19 40902682 40902682 G A PRX Missense_Mutation p.S526L 0.32 tolerated(0.13) possibly_damaging(0.519) TCGA-DS-A0VM-01 19 41083468 41083468 C T SHKBP1 Silent p.F64F 0.37 TCGA-DS-A0VM-01 19 41111379 41111379 G C LTBP4 Missense_Mutation p.E238Q 0.31 tolerated(0.16) probably_damaging(0.956) TCGA-DS-A0VM-01 19 42729490 42729490 G A ZNF526 Missense_Mutation p.R312H 0.47 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VM-01 19 46307553 46307553 G C RSPH6A Missense_Mutation p.S537C 0.22 deleterious(0) probably_damaging(0.981) TCGA-DS-A0VM-01 19 46341781 46341781 C G SYMPK Missense_Mutation p.D394H 0.32 tolerated(0.2) benign(0.235) TCGA-DS-A0VM-01 19 47287779 47287779 G A SLC1A5 Missense_Mutation p.R202C 0.34 deleterious(0) probably_damaging(0.954) TCGA-DS-A0VM-01 19 49993523 49993523 C G RPL13A Missense_Mutation p.I41M 0.36 tolerated(0.06) possibly_damaging(0.883) TCGA-DS-A0VM-01 19 50661604 50661604 G T IZUMO2 Silent p.R139R 0.05 TCGA-DS-A0VM-01 19 50753910 50753910 C T MYH14 Nonsense_Mutation p.Q599* 0.05 TCGA-DS-A0VM-01 19 53645643 53645644 - TTG ZNF347 In_Frame_Ins p.R147delinsSK 0.23 TCGA-DS-A0VM-01 19 56321310 56321310 C G NLRP11 Missense_Mutation p.K222N 0.27 tolerated(0.18) benign(0.023) TCGA-DS-A0VM-01 19 58806467 58806467 G A ZNF8 Silent p.L431L 0.38 TCGA-DS-A0VM-01 19 7527213 7527213 G C ARHGEF18 Missense_Mutation p.M688I 0.58 tolerated(0.78) benign(0.016) TCGA-DS-A0VM-01 19 9868423 9868423 G C ZNF846 Missense_Mutation p.H444D 0.45 deleterious(0) probably_damaging(1) TCGA-DS-A0VM-01 1 109366000 109366000 G C AKNAD1 Missense_Mutation p.S720C 0.29 deleterious(0) probably_damaging(0.998) TCGA-DS-A0VM-01 1 109794627 109794627 C T CELSR2 Silent p.V642V 0.36 TCGA-DS-A0VM-01 1 12835064 12835064 G A PRAMEF12 Silent p.L18L 0.25 TCGA-DS-A0VM-01 1 149902287 149902287 G C MTMR11 Missense_Mutation p.H539Q 0.26 tolerated(0.51) benign(0.096) TCGA-DS-A0VM-01 1 150772128 150772128 C G CTSK Missense_Mutation p.E226Q 0.20 tolerated(0.12) benign(0.349) TCGA-DS-A0VM-01 1 155279951 155279951 G C FDPS Missense_Mutation p.E98D 0.25 tolerated(0.63) benign(0) TCGA-DS-A0VM-01 1 15541908 15541908 C G TMEM51 Missense_Mutation p.H109D 0.34 tolerated(0.2) benign(0.047) TCGA-DS-A0VM-01 1 1572314 1572314 G T CDK11B Missense_Mutation p.T585N 0.33 unknown(0) TCGA-DS-A0VM-01 1 161021240 161021240 G A ARHGAP30 Silent p.L428L 0.49 TCGA-DS-A0VM-01 1 161091923 161091923 G A DEDD 3'UTR 0.18 TCGA-DS-A0VM-01 1 161092117 161092117 G A DEDD Silent p.F259F 0.29 TCGA-DS-A0VM-01 1 161092266 161092266 G T DEDD Missense_Mutation p.L210M 0.29 deleterious(0) probably_damaging(0.917) TCGA-DS-A0VM-01 1 16535286 16535286 C T ARHGEF19 Silent p.E88E 0.38 TCGA-DS-A0VM-01 1 174973857 174973857 G A CACYBP Silent p.K41K 0.49 TCGA-DS-A0VM-01 1 201197662 201197662 G A IGFN1 3'UTR 0.26 TCGA-DS-A0VM-01 1 202418211 202418211 C T PPP1R12B Missense_Mutation p.L588F 0.22 tolerated(0.72) benign(0.069) TCGA-DS-A0VM-01 1 202709925 202709925 C T KDM5B Silent p.L987L 0.24 TCGA-DS-A0VM-01 1 202710713 202710713 C T KDM5B Silent p.E909E 0.25 TCGA-DS-A0VM-01 1 205632701 205632701 G A SLC45A3 Missense_Mutation p.S73L 0.59 tolerated(0.06) possibly_damaging(0.61) TCGA-DS-A0VM-01 1 207222842 207222842 T A YOD1 Silent p.V190V 0.52 TCGA-DS-A0VM-01 1 211545904 211545904 G C TRAF5 Missense_Mutation p.D512H 0.52 tolerated(0.08) probably_damaging(0.982) TCGA-DS-A0VM-01 1 217787495 217787495 C T GPATCH2 Missense_Mutation p.E275K 0.15 deleterious(0) probably_damaging(0.998) TCGA-DS-A0VM-01 1 231556755 231556755 C T EGLN1 Missense_Mutation p.G294S 0.47 deleterious(0) probably_damaging(0.998) TCGA-DS-A0VM-01 1 235295079 235295079 C G RBM34 Missense_Mutation p.K414N 0.21 deleterious(0.01) unknown(0) TCGA-DS-A0VM-01 1 238090796 238090796 C T RP11-193H5.1 RNA 0.26 TCGA-DS-A0VM-01 1 244217494 244217494 G A ZBTB18 Missense_Mutation p.E140K 0.38 deleterious(0.02) probably_damaging(0.915) TCGA-DS-A0VM-01 1 244217625 244217625 G A ZBTB18 Silent p.R183R 0.53 TCGA-DS-A0VM-01 1 245848929 245848929 G A KIF26B Missense_Mutation p.D882N 0.51 deleterious(0.02) unknown(0) TCGA-DS-A0VM-01 1 28599131 28599131 G A SESN2 Missense_Mutation p.E193K 0.50 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VM-01 1 33058778 33058778 C T ZBTB8A Silent p.F82F 0.35 TCGA-DS-A0VM-01 1 34383868 34383868 C A CSMD2 Missense_Mutation p.Q209H 0.05 tolerated(0.15) possibly_damaging(0.903) TCGA-DS-A0VM-01 1 34663019 34663019 G A C1orf94 Missense_Mutation p.E172K 0.29 tolerated(0.08) possibly_damaging(0.695) TCGA-DS-A0VM-01 1 38511656 38511656 C T POU3F1 Missense_Mutation p.D254N 0.44 deleterious(0.01) probably_damaging(0.962) TCGA-DS-A0VM-01 1 44684814 44684814 G C DMAP1 Missense_Mutation p.Q269H 0.33 deleterious(0.02) possibly_damaging(0.819) TCGA-DS-A0VM-01 1 45293815 45293815 G A PTCH2 Silent p.D586D 0.24 TCGA-DS-A0VM-01 1 6007258 6007258 C T NPHP4 Missense_Mutation p.R342H 0.07 tolerated(0.14) benign(0.071) TCGA-DS-A0VM-01 1 66713176 66713176 G C PDE4B Silent p.R105R 0.05 TCGA-DS-A0VM-01 1 68173373 68173373 C T GNG12 5'UTR 0.30 TCGA-DS-A0VM-01 1 70505043 70505043 A T LRRC7 Missense_Mutation p.D1141V 0.11 deleterious(0) possibly_damaging(0.516) TCGA-DS-A0VM-01 1 70641557 70641557 G A LRRC40 Missense_Mutation p.P305S 0.38 tolerated(0.06) probably_damaging(0.988) TCGA-DS-A0VM-01 1 91851246 91851246 G A HFM1 Nonsense_Mutation p.Q214* 0.32 TCGA-DS-A0VM-01 1 9932074 9932074 G A CTNNBIP1 Nonsense_Mutation p.Q17* 0.44 TCGA-DS-A0VM-01 20 2594061 2594061 C G TMC2 Intron 0.42 TCGA-DS-A0VM-01 20 34295046 34295046 G C RBM39 Missense_Mutation p.Q435E 0.26 tolerated(0.34) benign(0.001) TCGA-DS-A0VM-01 20 43836630 43836630 C G SEMG1 Nonsense_Mutation p.S231* 0.35 TCGA-DS-A0VM-01 20 48604538 48604538 G C SNAI1 Missense_Mutation p.R247P 0.41 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VM-01 20 50346391 50346391 G T ATP9A Missense_Mutation p.F65L 0.31 tolerated(0.54) benign(0.001) TCGA-DS-A0VM-01 22 29886321 29886321 G A NEFH Missense_Mutation p.E898K 0.20 tolerated_low_confidence(0.27) unknown(0) TCGA-DS-A0VM-01 22 47107008 47107008 C T CERK Missense_Mutation p.E182K 0.29 tolerated(0.21) benign(0.259) TCGA-DS-A0VM-01 2 102851514 102851514 C G IL1RL2 Silent p.L485L 0.30 TCGA-DS-A0VM-01 2 103095452 103095452 C A SLC9A4 Silent p.P137P 0.25 TCGA-DS-A0VM-01 2 108489230 108489230 G A RGPD4 Silent p.Q1590Q 0.30 TCGA-DS-A0VM-01 2 122159197 122159197 C T CLASP1 Missense_Mutation p.D930N 0.31 tolerated(0.12) possibly_damaging(0.477) TCGA-DS-A0VM-01 2 128340010 128340010 C T MYO7B Silent p.F444F 0.33 TCGA-DS-A0VM-01 2 148654036 148654036 G A ACVR2A Silent p.V74V 0.30 TCGA-DS-A0VM-01 2 162903473 162903473 G A DPP4 Silent p.F79F 0.31 TCGA-DS-A0VM-01 2 168105466 168105466 C T XIRP2 Missense_Mutation p.H2522Y 0.30 benign(0.133) TCGA-DS-A0VM-01 2 168725859 168725859 G A B3GALT1 Missense_Mutation p.E104K 0.33 deleterious(0.01) probably_damaging(1) TCGA-DS-A0VM-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.40 deleterious(0) probably_damaging(1) TCGA-DS-A0VM-01 2 17902454 17902454 C A SMC6 Missense_Mutation p.M267I 0.36 tolerated(0.06) possibly_damaging(0.566) TCGA-DS-A0VM-01 2 17941369 17941369 C T GEN1 Silent p.L53L 0.31 TCGA-DS-A0VM-01 2 179427450 179427450 G A TTN Silent p.V27803V 0.21 TCGA-DS-A0VM-01 2 179579852 179579852 C T TTN Silent p.K8687K 0.28 TCGA-DS-A0VM-01 2 179638652 179638652 C G TTN Missense_Mutation p.E2415Q 0.27 TCGA-DS-A0VM-01 2 183826922 183826922 C T NCKAP1 Missense_Mutation p.D622N 0.28 tolerated(0.4) possibly_damaging(0.811) TCGA-DS-A0VM-01 2 189839160 189839160 G A COL3A1 5'UTR 0.37 TCGA-DS-A0VM-01 2 189868143 189868143 C T COL3A1 Missense_Mutation p.P854S 0.26 unknown(0) TCGA-DS-A0VM-01 2 190329969 190329969 G A WDR75 Silent p.K426K 0.28 TCGA-DS-A0VM-01 2 197208446 197208446 C T HECW2 Missense_Mutation p.G112D 0.27 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VM-01 2 203407068 203407068 G A BMPR2 Silent p.Q437Q 0.29 TCGA-DS-A0VM-01 2 20871110 20871110 C G GDF7 Silent p.L426L 0.39 TCGA-DS-A0VM-01 2 219374828 219374828 C A USP37 Missense_Mutation p.R300I 0.04 tolerated(0.11) possibly_damaging(0.894) TCGA-DS-A0VM-01 2 27459221 27459221 G C CAD Missense_Mutation p.E1382Q 0.39 tolerated(1) benign(0.038) TCGA-DS-A0VM-01 2 29436847 29436847 C T ALK Intron 0.26 TCGA-DS-A0VM-01 2 45704134 45704134 G A SRBD1 Nonsense_Mutation p.Q683* 0.31 TCGA-DS-A0VM-01 2 50765725 50765725 C T NRXN1 Silent p.E643E 0.36 TCGA-DS-A0VM-01 2 54483044 54483044 C G TSPYL6 Missense_Mutation p.G82A 0.31 tolerated(1) benign(0.012) TCGA-DS-A0VM-01 2 55459972 55459972 C T RPS27A Silent p.F4F 0.44 TCGA-DS-A0VM-01 2 61493135 61493135 C T USP34 Missense_Mutation p.M1867I 0.35 tolerated(0.14) benign(0.007) TCGA-DS-A0VM-01 2 71681070 71681070 C T DYSF 5'UTR 0.40 TCGA-DS-A0VM-01 2 74041326 74041326 C G C2orf78 Missense_Mutation p.Q274E 0.25 deleterious(0.03) possibly_damaging(0.816) TCGA-DS-A0VM-01 2 79313951 79313951 C A REG1B Missense_Mutation p.W57L 0.29 deleterious(0) possibly_damaging(0.888) TCGA-DS-A0VM-01 2 86075024 86075024 C T ST3GAL5 Missense_Mutation p.E208K 0.33 tolerated(0.3) benign(0.032) TCGA-DS-A0VM-01 2 90260072 90260072 C T IGKV1D-8 Nonsense_Mutation p.Q59* 0.26 TCGA-DS-A0VM-01 3 100413635 100413635 G A GPR128 Silent p.Q728Q 0.18 TCGA-DS-A0VM-01 3 10142946 10142946 G C FANCD2 3'Flank 0.66 TCGA-DS-A0VM-01 3 112198561 112198561 G A BTLA Silent p.I48I 0.22 TCGA-DS-A0VM-01 3 115560717 115560717 G A LSAMP Silent p.V298V 0.18 TCGA-DS-A0VM-01 3 122439176 122439176 G C PARP14 Missense_Mutation p.E1628Q 0.30 deleterious(0) probably_damaging(0.973) TCGA-DS-A0VM-01 3 140401568 140401568 G C TRIM42 Missense_Mutation p.K202N 0.21 deleterious(0.01) possibly_damaging(0.632) TCGA-DS-A0VM-01 3 149039239 149039239 G A TM4SF18 3'UTR 0.22 TCGA-DS-A0VM-01 3 158015851 158015851 G A RSRC1 Missense_Mutation p.G173E 0.25 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DS-A0VM-01 3 164710130 164710130 C T SI Missense_Mutation p.A1633T 0.22 deleterious(0) probably_damaging(0.978) TCGA-DS-A0VM-01 3 169566073 169566073 C T LRRC31 Missense_Mutation p.E388K 0.21 tolerated(0.08) benign(0.175) TCGA-DS-A0VM-01 3 17051428 17051428 G A PLCL2 Missense_Mutation p.G71E 0.55 deleterious(0) probably_damaging(1) TCGA-DS-A0VM-01 3 170858220 170858220 C T TNIK Missense_Mutation p.E434K 0.22 tolerated(0.22) unknown(0) TCGA-DS-A0VM-01 3 174814830 174814830 G C NAALADL2 Missense_Mutation p.Q98H 0.24 deleterious(0) probably_damaging(0.979) TCGA-DS-A0VM-01 3 178976824 178976824 C G LRRFIP1P1 RNA 0.23 TCGA-DS-A0VM-01 3 181430620 181430620 G A SOX2 Missense_Mutation p.D158N 0.27 deleterious(0.01) benign(0.06) TCGA-DS-A0VM-01 3 186917887 186917887 G A RTP1 3'UTR 0.28 TCGA-DS-A0VM-01 3 189711934 189711934 C G LEPREL1 Missense_Mutation p.E258Q 0.26 tolerated(0.15) possibly_damaging(0.889) TCGA-DS-A0VM-01 3 190147267 190147267 C T TMEM207 3'UTR 0.29 TCGA-DS-A0VM-01 3 196532222 196532222 G A PAK2 Splice_Site p.X146_splice 0.19 TCGA-DS-A0VM-01 3 35833939 35833939 C A ARPP21 Missense_Mutation p.Q701K 0.57 deleterious(0.01) benign(0.272) TCGA-DS-A0VM-01 3 48488243 48488243 G A ATRIP 5'UTR 0.44 TCGA-DS-A0VM-01 3 48495739 48495739 G C ATRIP Missense_Mutation p.E198Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-DS-A0VM-01 3 51457372 51457372 G A VPRBP Missense_Mutation p.R589C 0.52 deleterious(0.02) benign(0.132) TCGA-DS-A0VM-01 3 53808636 53808636 G A CACNA1D Missense_Mutation p.R1398K 0.44 tolerated(0.93) benign(0.002) TCGA-DS-A0VM-01 3 97983234 97983234 C T OR5H6 Nonsense_Mutation p.Q36* 0.24 TCGA-DS-A0VM-01 4 103979062 103979062 C T SLC9B2 Missense_Mutation p.G113E 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-DS-A0VM-01 4 111119453 111119453 G A ELOVL6 Silent p.F13F 0.11 TCGA-DS-A0VM-01 4 123145798 123145798 C A KIAA1109 Missense_Mutation p.A920D 0.35 possibly_damaging(0.649) TCGA-DS-A0VM-01 4 123663127 123663127 G C BBS12 Missense_Mutation p.R27T 0.36 deleterious(0) probably_damaging(0.993) TCGA-DS-A0VM-01 4 13602587 13602587 C T BOD1L1 Missense_Mutation p.M1979I 0.35 benign(0.045) TCGA-DS-A0VM-01 4 13603815 13603815 C T BOD1L1 Missense_Mutation p.R1570K 0.37 benign(0.004) TCGA-DS-A0VM-01 4 148407187 148407187 G A EDNRA Silent p.L118L 0.29 TCGA-DS-A0VM-01 4 151752977 151752977 G A LRBA Missense_Mutation p.S1574L 0.29 tolerated(0.1) possibly_damaging(0.477) TCGA-DS-A0VM-01 4 155157687 155157687 G C DCHS2 Missense_Mutation p.S2251C 0.43 deleterious(0) probably_damaging(1) TCGA-DS-A0VM-01 4 156850795 156850795 T A CTSO Missense_Mutation p.D246V 0.26 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VM-01 4 177113837 177113837 G A SPATA4 Missense_Mutation p.A210V 0.50 tolerated(1) benign(0.005) TCGA-DS-A0VM-01 4 17839398 17839398 C T NCAPG Nonsense_Mutation p.Q814* 0.30 TCGA-DS-A0VM-01 4 184240979 184240979 G A CLDN22 Silent p.V131V 0.61 TCGA-DS-A0VM-01 4 185683650 185683650 G A ACSL1 Nonsense_Mutation p.Q517* 0.51 TCGA-DS-A0VM-01 4 20530646 20530646 G A SLIT2 Missense_Mutation p.E513K 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-DS-A0VM-01 4 39507311 39507311 G A UGDH Silent p.L322L 0.25 TCGA-DS-A0VM-01 4 47746544 47746544 G A CORIN Missense_Mutation p.S225L 0.29 tolerated(0.09) benign(0.021) TCGA-DS-A0VM-01 4 72413402 72413402 A T SLC4A4 Missense_Mutation p.T887S 0.13 tolerated(0.07) possibly_damaging(0.859) TCGA-DS-A0VM-01 4 73156718 73156718 G A ADAMTS3 Missense_Mutation p.R929C 0.34 deleterious(0) probably_damaging(0.997) TCGA-DS-A0VM-01 4 75675896 75675896 C G BTC Missense_Mutation p.E105D 0.31 tolerated(0.05) possibly_damaging(0.548) TCGA-DS-A0VM-01 4 7725534 7725534 C T SORCS2 Silent p.P845P 0.38 TCGA-DS-A0VM-01 4 83351996 83351996 C T ENOPH1 Missense_Mutation p.S5L 0.09 deleterious(0.01) benign(0.011) TCGA-DS-A0VM-01 4 87643569 87643569 G C PTPN13 Missense_Mutation p.M530I 0.34 tolerated(0.06) benign(0.279) TCGA-DS-A0VM-01 4 88766894 88766894 G A MEPE Missense_Mutation p.E292K 0.35 deleterious(0.02) possibly_damaging(0.606) TCGA-DS-A0VM-01 5 140263386 140263386 C T PCDHA13 Silent p.H511H 0.04 TCGA-DS-A0VM-01 5 148406351 148406351 G A SH3TC2 Intron 0.61 TCGA-DS-A0VM-01 5 161520913 161520913 G A GABRG2 Missense_Mutation p.E63K 0.60 tolerated(0.06) benign(0.364) TCGA-DS-A0VM-01 5 169494639 169494639 G C DOCK2 Silent p.L1531L 0.04 TCGA-DS-A0VM-01 5 171481675 171481675 C A STK10 Missense_Mutation p.R850S 0.57 deleterious(0.01) possibly_damaging(0.567) TCGA-DS-A0VM-01 5 179050119 179050119 C T HNRNPH1 Missense_Mutation p.E6K 0.59 tolerated(0.06) benign(0.016) TCGA-DS-A0VM-01 5 179201031 179201031 C G MAML1 Nonsense_Mutation p.S735* 0.56 TCGA-DS-A0VM-01 5 179201368 179201368 C T MAML1 Silent p.L847L 0.58 TCGA-DS-A0VM-01 5 24509805 24509805 C T CDH10 Missense_Mutation p.E376K 0.49 tolerated(0.17) benign(0.102) TCGA-DS-A0VM-01 5 32088583 32088583 G A PDZD2 Missense_Mutation p.E1677K 0.43 tolerated(0.33) benign(0.024) TCGA-DS-A0VM-01 5 36038116 36038116 G A UGT3A2 Missense_Mutation p.H360Y 0.44 deleterious(0.04) possibly_damaging(0.708) TCGA-DS-A0VM-01 5 44813303 44813303 G A MRPS30 Missense_Mutation p.A317T 0.48 tolerated(0.35) benign(0.318) TCGA-DS-A0VM-01 5 79025923 79025923 A G CMYA5 Silent p.A445A 0.52 TCGA-DS-A0VM-01 5 86564633 86564633 C A RASA1 Nonsense_Mutation p.S122* 0.66 TCGA-DS-A0VM-01 6 10876766 10876766 G T GCM2 Missense_Mutation p.S123Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-DS-A0VM-01 6 124979388 124979388 G A NKAIN2 Silent p.E110E 0.31 TCGA-DS-A0VM-01 6 128643434 128643434 G C PTPRK Missense_Mutation p.S82C 0.26 deleterious(0) benign(0.224) TCGA-DS-A0VM-01 6 132067987 132067987 G A ENPP3 Missense_Mutation p.R840H 0.38 deleterious(0) probably_damaging(0.998) TCGA-DS-A0VM-01 6 134210908 134210908 T A TCF21 Missense_Mutation p.S125T 0.32 tolerated(0.12) possibly_damaging(0.587) TCGA-DS-A0VM-01 6 137323176 137323176 G A IL20RA Missense_Mutation p.P394L 0.26 tolerated(0.12) benign(0.008) TCGA-DS-A0VM-01 6 146755990 146755990 G A GRM1 3'UTR 0.42 TCGA-DS-A0VM-01 6 168443353 168443353 G A KIF25 Silent p.P314P 0.51 TCGA-DS-A0VM-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.30 TCGA-DS-A0VM-01 6 26031939 26031939 C G HIST1H3B Missense_Mutation p.R117P 0.05 deleterious_low_confidence(0) possibly_damaging(0.565) TCGA-DS-A0VM-01 6 27879219 27879219 C G OR2B2 Missense_Mutation p.R293S 0.76 deleterious(0) possibly_damaging(0.839) TCGA-DS-A0VM-01 6 29691698 29691698 G A HLA-F Missense_Mutation p.E110K 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.896) TCGA-DS-A0VM-01 6 30594924 30594924 G C ATAT1 5'UTR 0.44 TCGA-DS-A0VM-01 6 31732268 31732268 G A SAPCD1 Missense_Mutation p.R166Q 0.31 tolerated_low_confidence(0.47) benign(0.002) TCGA-DS-A0VM-01 6 32007219 32007219 C T CYP21A2 Silent p.F178F 0.22 TCGA-DS-A0VM-01 6 4077651 4077651 T A FAM217A 5'UTR 0.47 TCGA-DS-A0VM-01 6 46626687 46626687 T A SLC25A27 Intron 0.04 TCGA-DS-A0VM-01 6 55625297 55625297 C T BMP5 Silent p.K354K 0.17 TCGA-DS-A0VM-01 6 56506864 56506864 C T DST Silent p.Q99Q 0.72 TCGA-DS-A0VM-01 6 76380320 76380320 C G SENP6 Missense_Mutation p.Q426E 0.36 tolerated(0.08) benign(0.05) TCGA-DS-A0VM-01 6 76660509 76660509 C T IMPG1 Missense_Mutation p.E532K 0.25 deleterious(0.02) benign(0.086) TCGA-DS-A0VM-01 6 78172818 78172832 CAGGATGGACACAAG - HTR1B In_Frame_Del p.L97_L101del 0.32 TCGA-DS-A0VM-01 6 80656984 80656984 C T ELOVL4 Missense_Mutation p.D5N 0.19 tolerated_low_confidence(0.22) benign(0.002) TCGA-DS-A0VM-01 6 90484342 90484342 C G MDN1 Missense_Mutation p.Q644H 0.28 possibly_damaging(0.593) TCGA-DS-A0VM-01 7 113558804 113558804 C T PPP1R3A Nonsense_Mutation p.W83* 0.16 TCGA-DS-A0VM-01 7 148863947 148863947 C G ZNF398 Missense_Mutation p.Q196E 0.12 tolerated(1) benign(0.08) TCGA-DS-A0VM-01 7 151917764 151917764 G A KMT2C Nonsense_Mutation p.Q1186* 0.62 TCGA-DS-A0VM-01 7 21789930 21789930 C A DNAH11 Missense_Mutation p.S2970Y 0.50 possibly_damaging(0.759) TCGA-DS-A0VM-01 7 2963931 2963931 C T CARD11 Missense_Mutation p.E626K 0.38 tolerated(0.16) possibly_damaging(0.638) TCGA-DS-A0VM-01 7 31682837 31682837 G T CCDC129 Missense_Mutation p.R644L 0.31 tolerated(0.3) possibly_damaging(0.595) TCGA-DS-A0VM-01 7 36616224 36616224 C G AOAH Missense_Mutation p.R326T 0.38 deleterious(0) probably_damaging(0.976) TCGA-DS-A0VM-01 7 43846862 43846862 G C BLVRA 3'UTR 0.36 TCGA-DS-A0VM-01 7 56082739 56082739 C T PSPH Missense_Mutation p.D183N 0.28 deleterious(0) benign(0.283) TCGA-DS-A0VM-01 7 65599341 65599341 G A CRCP Silent p.L73L 0.68 TCGA-DS-A0VM-01 7 72657979 72657979 G A GTF2IRD2P1 RNA 0.27 TCGA-DS-A0VM-01 7 77010632 77010632 C A GSAP Missense_Mutation p.G189V 0.34 deleterious(0.02) benign(0.119) TCGA-DS-A0VM-01 7 84642132 84642132 G A SEMA3D Silent p.G578G 0.05 TCGA-DS-A0VM-01 7 90338818 90338818 C G CDK14 5'UTR 0.27 TCGA-DS-A0VM-01 8 100589801 100589801 C G VPS13B Silent p.L1745L 0.06 TCGA-DS-A0VM-01 8 100654154 100654154 G C VPS13B Missense_Mutation p.R1804T 0.36 tolerated(0.27) possibly_damaging(0.879) TCGA-DS-A0VM-01 8 101960892 101960893 - T YWHAZ Frame_Shift_Ins p.Q76Tfs*12 0.33 TCGA-DS-A0VM-01 8 110393634 110393634 G A PKHD1L1 Missense_Mutation p.D67N 0.25 tolerated(0.21) benign(0.428) TCGA-DS-A0VM-01 8 110569206 110569206 G C EBAG9 Missense_Mutation p.D122H 0.14 deleterious(0.02) benign(0.414) TCGA-DS-A0VM-01 8 124408481 124408481 G C ATAD2 Silent p.L39L 0.37 TCGA-DS-A0VM-01 8 143995805 143995805 C A CYP11B2 Nonsense_Mutation p.E277* 0.45 TCGA-DS-A0VM-01 8 145584267 145584267 G A SLC52A2 Missense_Mutation p.G340D 0.47 deleterious(0.01) possibly_damaging(0.529) TCGA-DS-A0VM-01 8 146202368 146202368 G A ZNF252P RNA 0.30 TCGA-DS-A0VM-01 8 27398141 27398141 C G EPHX2 Missense_Mutation p.F449L 0.26 deleterious(0.02) benign(0.193) TCGA-DS-A0VM-01 8 30209689 30209689 G A TUBBP1 RNA 0.27 TCGA-DS-A0VM-01 8 37611643 37611643 G C ERLIN2 3'UTR 0.33 TCGA-DS-A0VM-01 8 442413 442413 C T TDRP Intron 0.27 TCGA-DS-A0VM-01 8 97157727 97157727 C A GDF6 Silent p.R144R 0.31 TCGA-DS-A0VM-01 8 98289988 98289988 G C TSPYL5 Missense_Mutation p.P29A 0.25 tolerated(0.05) unknown(0) TCGA-DS-A0VM-01 9 102782991 102782991 C G ERP44 Missense_Mutation p.G165A 0.27 tolerated(0.22) benign(0.103) TCGA-DS-A0VM-01 9 127300382 127300382 C G NR6A1 Missense_Mutation p.L271F 0.33 tolerated(0.11) possibly_damaging(0.741) TCGA-DS-A0VM-01 9 130167187 130167187 C T SLC2A8 Missense_Mutation p.S356L 0.34 tolerated(0.41) benign(0.001) TCGA-DS-A0VM-01 9 130259564 130259564 G C LRSAM1 Missense_Mutation p.E621D 0.32 tolerated(0.15) benign(0.142) TCGA-DS-A0VM-01 9 136217463 136217463 C G RPL7A Missense_Mutation p.F169L 0.45 deleterious(0.03) possibly_damaging(0.523) TCGA-DS-A0VM-01 9 137734054 137734054 G A COL5A1 Missense_Mutation p.E1808K 0.31 unknown(0) TCGA-DS-A0VM-01 9 22447043 22447043 C G DMRTA1 5'UTR 0.50 TCGA-DS-A0VM-01 9 6251261 6251261 C T IL33 Silent p.I113I 0.02 TCGA-DS-A0VM-01 9 6814699 6814699 T C KDM4C Missense_Mutation p.V130A 0.06 tolerated(0.19) possibly_damaging(0.467) TCGA-DS-A0VM-01 9 82308552 82308552 G A TLE4 Intron 0.23 TCGA-DS-A0VM-01 X 107976265 107976265 G A IRS4 Missense_Mutation p.P1104S 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-DS-A0VM-01 X 123164963 123164963 G C STAG2 Missense_Mutation p.K92N 0.17 deleterious(0.02) possibly_damaging(0.885) TCGA-DS-A0VM-01 X 123695634 123695634 C T TENM1 Missense_Mutation p.R774Q 0.22 tolerated(0.28) benign(0.014) TCGA-DS-A0VM-01 X 133941542 133941542 C A FAM122C 5'UTR 0.23 TCGA-DS-A0VM-01 X 135428816 135428816 A T GPR112 Missense_Mutation p.D984V 0.05 deleterious(0) possibly_damaging(0.521) TCGA-DS-A0VM-01 X 1531691 1531691 G A ASMTL Silent p.L527L 0.19 TCGA-DS-A0VM-01 X 153670074 153670074 C G GDI1 Missense_Mutation p.I308M 0.22 deleterious(0) probably_damaging(0.99) TCGA-DS-A0VM-01 X 155234190 155234190 G T IL9R Missense_Mutation p.S180I 0.31 deleterious(0) possibly_damaging(0.715) TCGA-DS-A0VM-01 X 18662593 18662593 C T RS1 Missense_Mutation p.R160H 0.37 tolerated(0.11) benign(0) TCGA-DS-A0VM-01 X 21675600 21675600 G A KLHL34 Silent p.L103L 0.45 TCGA-DS-A0VM-01 X 26157793 26157793 G A MAGEB18 Missense_Mutation p.D231N 0.27 deleterious(0.03) benign(0.021) TCGA-DS-A0VM-01 X 3229099 3229099 G A MXRA5 Missense_Mutation p.S2382F 0.35 tolerated(0.11) probably_damaging(0.998) TCGA-DS-A0VM-01 X 32591732 32591732 G A DMD Missense_Mutation p.S576L 0.23 possibly_damaging(0.838) TCGA-DS-A0VM-01 X 44383368 44383368 G C FUNDC1 3'UTR 0.13 TCGA-DS-A0VM-01 X 46532051 46532051 G A SLC9A7 Silent p.F205F 0.20 TCGA-DS-A0VM-01 X 47062948 47062948 G C UBA1 Silent p.A476A 0.25 TCGA-DS-A0VM-01 X 49958365 49958365 G A AKAP4 Silent p.L333L 0.11 TCGA-DS-A0VM-01 X 53106338 53106338 C T GPR173 Missense_Mutation p.R179C 0.23 deleterious(0) probably_damaging(0.959) TCGA-DS-A0VM-01 X 54950197 54950197 G A TRO Missense_Mutation p.R411Q 0.29 tolerated(0.29) unknown(0) TCGA-DS-A0VM-01 X 54982618 54982618 G A PFKFB1 Silent p.V202V 0.22 TCGA-DS-A0VM-01 X 55479285 55479285 G C MAGEH1 Missense_Mutation p.E160Q 0.21 deleterious_low_confidence(0.04) probably_damaging(0.988) TCGA-DS-A0VM-01 X 75003459 75003459 G A MAGEE2 Silent p.I476I 0.25 TCGA-DS-A0VM-01 X 79955474 79955474 C T BRWD3 Nonsense_Mutation p.W975* 0.13 TCGA-DS-A0VM-01 X 8434154 8434154 G C VCX3B Missense_Mutation p.E157D 0.28 tolerated(0.18) unknown(0) TCGA-DS-A0VM-01 X 9864427 9864427 G A SHROOM2 Missense_Mutation p.E827K 0.26 deleterious(0.03) possibly_damaging(0.811) TCGA-DS-A0VN-01 10 103543165 103543165 C A NPM3 5'UTR 0.18 TCGA-DS-A0VN-01 10 120917551 120917551 C T SFXN4 Silent p.L128L 0.39 TCGA-DS-A0VN-01 10 69970387 69970387 G C MYPN 3'UTR 0.25 TCGA-DS-A0VN-01 10 97050722 97050722 G C PDLIM1 5'UTR 0.67 TCGA-DS-A0VN-01 11 1011189 1011189 G A AP2A2 3'UTR 0.39 TCGA-DS-A0VN-01 11 118498318 118498318 C T PHLDB1 Missense_Mutation p.S260L 0.18 deleterious(0.01) benign(0.354) TCGA-DS-A0VN-01 11 45671135 45671135 G C CHST1 3'UTR 0.22 TCGA-DS-A0VN-01 11 47236499 47236499 G C DDB2 5'UTR 0.56 TCGA-DS-A0VN-01 11 58980271 58980271 G A MPEG1 Missense_Mutation p.S23L 0.21 tolerated(0.85) benign(0) TCGA-DS-A0VN-01 11 62491178 62491178 G A HNRNPUL2 Nonsense_Mutation p.Q258* 0.20 TCGA-DS-A0VN-01 11 66298426 66298426 G A BBS1 Missense_Mutation p.R512H 0.38 tolerated(0.09) possibly_damaging(0.862) TCGA-DS-A0VN-01 11 66366699 66366699 C G CCS Silent p.L75L 0.33 TCGA-DS-A0VN-01 11 67174345 67174345 G A TBC1D10C Silent p.R232R 0.03 TCGA-DS-A0VN-01 12 132393320 132393320 G A ULK1 Missense_Mutation p.A150T 0.17 tolerated(0.27) benign(0.081) TCGA-DS-A0VN-01 12 133331269 133331269 G A ANKLE2 Missense_Mutation p.A211V 0.14 tolerated(0.25) benign(0.011) TCGA-DS-A0VN-01 12 8673940 8673940 G A CLEC4D 3'UTR 0.07 TCGA-DS-A0VN-01 12 9354941 9354941 C T PZP Missense_Mutation p.E152K 0.16 tolerated(0.71) benign(0.422) TCGA-DS-A0VN-01 13 113909425 113909425 C G CUL4A Missense_Mutation p.Q673E 0.18 deleterious(0) probably_damaging(0.98) TCGA-DS-A0VN-01 13 114780743 114780743 C G RASA3 Silent p.P449P 0.31 TCGA-DS-A0VN-01 13 32749764 32749764 G C FRY Missense_Mutation p.D806H 0.40 deleterious(0.01) benign(0.251) TCGA-DS-A0VN-01 13 45517691 45517691 C G NUFIP1 Missense_Mutation p.K419N 0.20 deleterious(0.05) benign(0.025) TCGA-DS-A0VN-01 13 50034278 50034278 G A SETDB2 Missense_Mutation p.D18N 0.17 tolerated(0.51) benign(0.014) TCGA-DS-A0VN-01 13 99948184 99948184 A C GPR183 Missense_Mutation p.N72K 0.11 deleterious(0) probably_damaging(1) TCGA-DS-A0VN-01 14 100705962 100705962 C T YY1 Silent p.F127F 0.18 TCGA-DS-A0VN-01 14 102481656 102481656 C T DYNC1H1 Missense_Mutation p.S2410F 0.37 benign(0.024) TCGA-DS-A0VN-01 14 105417015 105417015 G A AHNAK2 Silent p.L1591L 0.14 TCGA-DS-A0VN-01 14 105643016 105643016 C T NUDT14 Missense_Mutation p.G95S 0.15 deleterious(0.02) probably_damaging(0.97) TCGA-DS-A0VN-01 14 21502046 21502046 G C RNASE13 Silent p.L134L 0.17 TCGA-DS-A0VN-01 14 23894516 23894516 C T MYH7 Missense_Mutation p.E800K 0.14 tolerated(0.16) possibly_damaging(0.796) TCGA-DS-A0VN-01 14 23894521 23894521 C T MYH7 Missense_Mutation p.R798K 0.14 deleterious(0.05) probably_damaging(0.999) TCGA-DS-A0VN-01 14 51464737 51464737 C T TRIM9 Intron 0.27 TCGA-DS-A0VN-01 14 69259751 69259751 G A ZFP36L1 5'UTR 0.28 TCGA-DS-A0VN-01 14 74763119 74763119 G T ABCD4 Missense_Mutation p.F153L 0.14 tolerated(0.6) benign(0.03) TCGA-DS-A0VN-01 14 89039043 89039043 G A ZC3H14 Missense_Mutation p.D185N 0.28 deleterious(0.03) benign(0.113) TCGA-DS-A0VN-01 14 94395423 94395423 G C FAM181A Missense_Mutation p.Q326H 0.29 deleterious(0.05) probably_damaging(0.983) TCGA-DS-A0VN-01 14 99865319 99865319 C T SETD3 Silent p.E494E 0.16 TCGA-DS-A0VN-01 15 43527686 43527686 G C TGM5 Missense_Mutation p.I565M 0.30 tolerated(0.06) possibly_damaging(0.794) TCGA-DS-A0VN-01 15 43928408 43928408 C T CATSPER2 Silent p.P284P 0.14 TCGA-DS-A0VN-01 15 44166325 44166325 C T FRMD5 Missense_Mutation p.E491K 0.25 tolerated(0.92) benign(0.021) TCGA-DS-A0VN-01 15 51350059 51350059 C G TNFAIP8L3 3'UTR 0.22 TCGA-DS-A0VN-01 15 51755661 51755661 C T DMXL2 Missense_Mutation p.R2614Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VN-01 15 63881069 63881069 C T USP3 Intron 0.25 TCGA-DS-A0VN-01 15 81274372 81274372 C T MESDC2 Missense_Mutation p.G122E 0.23 deleterious(0.05) probably_damaging(0.995) TCGA-DS-A0VN-01 15 90903975 90903975 G A ZNF774 Silent p.S304S 0.05 TCGA-DS-A0VN-01 16 17202492 17202492 C A XYLT1 3'UTR 0.17 TCGA-DS-A0VN-01 16 18841063 18841063 C T SMG1 Missense_Mutation p.E3050K 0.20 tolerated(0.08) benign(0.01) TCGA-DS-A0VN-01 16 20975107 20975107 C G DNAH3 Missense_Mutation p.E3367Q 0.21 deleterious(0) probably_damaging(1) TCGA-DS-A0VN-01 16 21994417 21994417 G A UQCRC2 Silent p.K429K 0.13 TCGA-DS-A0VN-01 16 25172470 25172470 C T LCMT1 Missense_Mutation p.L172F 0.23 deleterious(0) probably_damaging(1) TCGA-DS-A0VN-01 16 68026017 68026017 C T DPEP2 Missense_Mutation p.R157H 0.14 tolerated(1) benign(0.008) TCGA-DS-A0VN-01 16 69727754 69727754 C G NFAT5 Silent p.P1342P 0.41 TCGA-DS-A0VN-01 16 773855 773855 A G CCDC78 Splice_Site p.X378_splice 0.25 TCGA-DS-A0VN-01 17 17380479 17380479 C G MED9 Missense_Mutation p.Q42E 0.38 tolerated_low_confidence(0.78) benign(0.024) TCGA-DS-A0VN-01 17 27430627 27430627 C G MYO18A Missense_Mutation p.G1166A 0.12 deleterious(0.01) probably_damaging(1) TCGA-DS-A0VN-01 17 29528441 29528441 C T NF1 Nonsense_Mutation p.Q400* 0.39 TCGA-DS-A0VN-01 17 35986056 35986056 C T DDX52 Missense_Mutation p.A341T 0.20 deleterious(0) probably_damaging(0.955) TCGA-DS-A0VN-01 17 40991365 40991365 C T PSME3 Missense_Mutation p.R231W 0.44 tolerated(0.23) probably_damaging(0.993) TCGA-DS-A0VN-01 17 44076625 44076625 T G STH 5'UTR 0.37 TCGA-DS-A0VN-01 17 53798408 53798408 C T TMEM100 Silent p.E8E 0.21 TCGA-DS-A0VN-01 17 7253489 7253489 C G ACAP1 Missense_Mutation p.R669G 0.27 tolerated(0.38) benign(0.017) TCGA-DS-A0VN-01 17 74041399 74041399 G A SRP68 Silent p.L456L 0.19 TCGA-DS-A0VN-01 17 74383215 74383215 G C SPHK1 Missense_Mutation p.D321H 0.21 deleterious(0.03) benign(0.098) TCGA-DS-A0VN-01 17 77807985 77807985 C T CBX4 Missense_Mutation p.E486K 0.26 tolerated(0.12) benign(0.055) TCGA-DS-A0VN-01 18 8784515 8784515 G C SOGA2 Missense_Mutation p.E469Q 0.16 tolerated(0.09) possibly_damaging(0.886) TCGA-DS-A0VN-01 19 1270131 1270131 C T CIRBP Intron 0.15 TCGA-DS-A0VN-01 19 1272191 1272191 C G CIRBP Intron 0.29 TCGA-DS-A0VN-01 19 12903536 12903536 C T JUNB Silent p.L317L 0.14 TCGA-DS-A0VN-01 19 14627324 14627324 C T DNAJB1 Missense_Mutation p.R249K 0.11 deleterious(0.01) probably_damaging(1) TCGA-DS-A0VN-01 19 14627859 14627859 C T DNAJB1 Splice_Site p.X71_splice 0.20 TCGA-DS-A0VN-01 19 1483434 1483434 C T PCSK4 Missense_Mutation p.E474K 0.20 tolerated(1) benign(0) TCGA-DS-A0VN-01 19 17374921 17374921 G A USHBP1 Silent p.V31V 0.38 TCGA-DS-A0VN-01 19 19823848 19823848 C G ZNF14 Missense_Mutation p.G81A 0.36 tolerated(0.06) benign(0.055) TCGA-DS-A0VN-01 19 19825240 19825240 C G ZNF14 Missense_Mutation p.L20F 0.43 deleterious(0.04) probably_damaging(0.995) TCGA-DS-A0VN-01 19 2477087 2477087 C T GADD45B Silent p.I69I 0.10 TCGA-DS-A0VN-01 19 38103818 38103818 C T ZNF540 Missense_Mutation p.S546F 0.18 deleterious(0) possibly_damaging(0.837) TCGA-DS-A0VN-01 19 41447224 41447224 C T CYP2B7P RNA 0.23 TCGA-DS-A0VN-01 19 45571722 45571722 G C CLASRP Missense_Mutation p.K584N 0.14 deleterious(0.03) unknown(0) TCGA-DS-A0VN-01 19 46543814 46543814 A G IGFL4 Missense_Mutation p.I11T 0.18 deleterious(0.02) possibly_damaging(0.611) TCGA-DS-A0VN-01 19 48946618 48946618 C T GRIN2D Silent p.L1145L 0.33 TCGA-DS-A0VN-01 19 49260187 49260187 C G FGF21 Silent p.L80L 0.39 TCGA-DS-A0VN-01 19 49649197 49649197 C T PPFIA3 Intron 0.44 TCGA-DS-A0VN-01 19 50295238 50295238 C T AP2A1 Nonsense_Mutation p.R174* 0.12 TCGA-DS-A0VN-01 19 53884257 53884257 C G ZNF525 Nonsense_Mutation p.S142* 0.16 TCGA-DS-A0VN-01 19 55497595 55497595 C T NLRP2 Silent p.L760L 0.16 TCGA-DS-A0VN-01 19 56180459 56180459 G T U2AF2 Missense_Mutation p.G319V 0.20 deleterious(0) probably_damaging(0.917) TCGA-DS-A0VN-01 1 11900256 11900256 G A CLCN6 Silent p.L862L 0.41 TCGA-DS-A0VN-01 1 154245822 154245822 C T HAX1 Missense_Mutation p.P22S 0.34 deleterious(0.01) possibly_damaging(0.586) TCGA-DS-A0VN-01 1 155931936 155931936 C T ARHGEF2 Silent p.K393K 0.27 TCGA-DS-A0VN-01 1 16256225 16256225 G A SPEN Missense_Mutation p.D1164N 0.29 probably_damaging(0.995) TCGA-DS-A0VN-01 1 16474972 16474972 C T EPHA2 Missense_Mutation p.E242K 0.26 tolerated(0.5) benign(0.023) TCGA-DS-A0VN-01 1 166963303 166963303 G A MAEL Missense_Mutation p.A174T 0.44 tolerated(0.08) probably_damaging(0.934) TCGA-DS-A0VN-01 1 167852753 167852753 G A ADCY10 Silent p.I314I 0.16 TCGA-DS-A0VN-01 1 178846666 178846666 C T RALGPS2 Missense_Mutation p.S214L 0.13 tolerated(0.36) benign(0.04) TCGA-DS-A0VN-01 1 183604680 183604680 C T ARPC5 Missense_Mutation p.E39K 0.11 tolerated(0.08) benign(0.071) TCGA-DS-A0VN-01 1 197390187 197390187 G A CRB1 Missense_Mutation p.G410D 0.38 deleterious(0) probably_damaging(1) TCGA-DS-A0VN-01 1 227152739 227152739 C T ADCK3 Silent p.F72F 0.10 TCGA-DS-A0VN-01 1 230804495 230804495 A G COG2 Missense_Mutation p.S187G 0.14 deleterious(0) probably_damaging(0.928) TCGA-DS-A0VN-01 1 2537001 2537001 C T MMEL1 Missense_Mutation p.R271Q 0.43 tolerated(0.62) benign(0.011) TCGA-DS-A0VN-01 1 27680377 27680377 C G SYTL1 3'UTR 0.06 TCGA-DS-A0VN-01 1 31896551 31896551 C T SERINC2 Silent p.L26L 0.11 TCGA-DS-A0VN-01 1 38227478 38227478 C T EPHA10 Missense_Mutation p.R150H 0.28 tolerated(0.52) benign(0.012) TCGA-DS-A0VN-01 1 66732396 66732396 G C PDE4B Intron 0.23 TCGA-DS-A0VN-01 20 2474595 2474595 G C ZNF343 5'UTR 0.23 TCGA-DS-A0VN-01 20 30610588 30610588 C T CCM2L Silent p.L353L 0.28 TCGA-DS-A0VN-01 20 57244413 57244413 G C STX16 Missense_Mutation p.E154Q 0.37 deleterious(0.05) benign(0.078) TCGA-DS-A0VN-01 20 60856904 60856904 C G OSBPL2 Missense_Mutation p.H281D 0.27 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VN-01 20 61542823 61542823 G A DIDO1 Silent p.L48L 0.18 TCGA-DS-A0VN-01 20 62195546 62195546 G A HELZ2 Silent p.S1543S 0.45 TCGA-DS-A0VN-01 21 16337230 16337230 G A NRIP1 Missense_Mutation p.S1095F 0.32 tolerated(0.36) benign(0.002) TCGA-DS-A0VN-01 21 16338244 16338244 G A NRIP1 Missense_Mutation p.S757F 0.26 deleterious(0) possibly_damaging(0.829) TCGA-DS-A0VN-01 21 40587221 40587221 C T BRWD1 Missense_Mutation p.E1243K 0.10 tolerated(0.38) benign(0.224) TCGA-DS-A0VN-01 21 45104458 45104458 C T RRP1B Nonsense_Mutation p.R306* 0.37 TCGA-DS-A0VN-01 21 47929216 47929216 G C DIP2A Silent p.L277L 0.29 TCGA-DS-A0VN-01 22 20760282 20760282 A G ZNF74 Missense_Mutation p.N320S 0.21 tolerated(0.73) probably_damaging(0.996) TCGA-DS-A0VN-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.22 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VN-01 22 30866217 30866217 C T SEC14L3 Silent p.S52S 0.17 TCGA-DS-A0VN-01 22 41652027 41652027 G A RANGAP1 Silent p.L357L 0.25 TCGA-DS-A0VN-01 22 50719361 50719361 C T PLXNB2 Missense_Mutation p.E1269K 0.18 tolerated(0.14) probably_damaging(0.98) TCGA-DS-A0VN-01 2 112995977 112995977 T C ZC3H8 Silent p.Q95Q 0.19 TCGA-DS-A0VN-01 2 113496492 113496492 C T CKAP2L Missense_Mutation p.E716K 0.40 deleterious(0) probably_damaging(0.955) TCGA-DS-A0VN-01 2 121995282 121995282 G A TFCP2L1 Missense_Mutation p.P307L 0.35 deleterious(0.01) benign(0.011) TCGA-DS-A0VN-01 2 170930076 170930076 G A UBR3 Missense_Mutation p.E1720K 0.18 deleterious(0.04) probably_damaging(0.987) TCGA-DS-A0VN-01 2 223553201 223553201 G T MOGAT1 Missense_Mutation p.W78L 0.13 tolerated(0.15) benign(0.269) TCGA-DS-A0VN-01 2 27276285 27276285 C T AGBL5 Silent p.F77F 0.24 TCGA-DS-A0VN-01 2 36986238 36986238 C T VIT Intron 0.32 TCGA-DS-A0VN-01 2 89247277 89247277 G A IGKV1-5 Silent p.P6P 0.32 TCGA-DS-A0VN-01 2 97369333 97369333 C T LMAN2L 3'Flank 0.14 TCGA-DS-A0VN-01 3 114014436 114014436 G A TIGIT Missense_Mutation p.E36K 0.29 tolerated(0.41) benign(0.004) TCGA-DS-A0VN-01 3 120363243 120363243 A G HGD Missense_Mutation p.W233R 0.15 tolerated(0.26) benign(0.202) TCGA-DS-A0VN-01 3 121527805 121527805 G A IQCB1 Missense_Mutation p.L149F 0.25 tolerated(0.06) benign(0.038) TCGA-DS-A0VN-01 3 136664454 136664454 G A NCK1 Missense_Mutation p.V86M 0.11 tolerated(0.17) benign(0.007) TCGA-DS-A0VN-01 3 141278739 141278739 C G RASA2 Missense_Mutation p.I255M 0.07 deleterious(0) possibly_damaging(0.65) TCGA-DS-A0VN-01 3 14170936 14170936 G A TMEM43 Missense_Mutation p.E13K 0.37 tolerated(0.13) benign(0.002) TCGA-DS-A0VN-01 3 14170986 14170986 G A TMEM43 Silent p.L29L 0.35 TCGA-DS-A0VN-01 3 14170992 14170992 G A TMEM43 Silent p.E31E 0.37 TCGA-DS-A0VN-01 3 150127938 150127938 G A TSC22D2 Silent p.Q267Q 0.18 TCGA-DS-A0VN-01 3 197616500 197616500 G C IQCG Nonsense_Mutation p.S428* 0.14 TCGA-DS-A0VN-01 3 74535723 74535723 C G CNTN3 Missense_Mutation p.G81A 0.14 deleterious(0.02) possibly_damaging(0.519) TCGA-DS-A0VN-01 4 104035655 104035655 C G CENPE Missense_Mutation p.L2499F 0.14 probably_damaging(0.998) TCGA-DS-A0VN-01 4 10446457 10446457 C A ZNF518B Missense_Mutation p.G499V 0.47 tolerated(0.08) possibly_damaging(0.893) TCGA-DS-A0VN-01 4 113461126 113461127 - T C4orf21 Frame_Shift_Ins p.R2022Kfs*8 0.24 TCGA-DS-A0VN-01 4 114267077 114267077 C T ANK2 Missense_Mutation p.P1424S 0.16 probably_damaging(0.992) TCGA-DS-A0VN-01 4 123301290 123301290 G C ADAD1 Missense_Mutation p.K22N 0.36 deleterious(0) probably_damaging(0.928) TCGA-DS-A0VN-01 4 144106889 144106889 C G USP38 Missense_Mutation p.L96V 0.35 tolerated(0.28) benign(0.014) TCGA-DS-A0VN-01 4 153247245 153247245 A T FBXW7 Nonsense_Mutation p.Y519* 0.37 TCGA-DS-A0VN-01 4 153864414 153864414 G A FHDC1 Missense_Mutation p.E69K 0.35 tolerated(0.24) benign(0.05) TCGA-DS-A0VN-01 4 48537794 48537794 C T FRYL Missense_Mutation p.M2148I 0.42 deleterious(0) probably_damaging(0.989) TCGA-DS-A0VN-01 4 84361036 84361036 C T HELQ Missense_Mutation p.M596I 0.13 deleterious(0.01) benign(0.165) TCGA-DS-A0VN-01 5 102526607 102526625 TTTAAAGCAAGTGGATGAA - PPIP5K2 Frame_Shift_Del p.L1119Ffs*29 0.34 TCGA-DS-A0VN-01 5 140306841 140306841 C A PCDHAC1 Missense_Mutation p.P122T 0.16 deleterious(0) probably_damaging(0.989) TCGA-DS-A0VN-01 5 149506138 149506138 G A PDGFRB Missense_Mutation p.A540V 0.18 tolerated(0.54) benign(0.009) TCGA-DS-A0VN-01 5 150028172 150028172 C G SYNPO Missense_Mutation p.S356C 0.31 deleterious(0.02) possibly_damaging(0.853) TCGA-DS-A0VN-01 5 154092620 154092620 G A LARP1 Silent p.P45P 0.41 TCGA-DS-A0VN-01 5 155771677 155771677 A C SGCD Missense_Mutation p.N61T 0.14 tolerated(0.19) probably_damaging(0.974) TCGA-DS-A0VN-01 5 158745773 158745773 G C IL12B Missense_Mutation p.Q276E 0.06 deleterious(0.01) benign(0.346) TCGA-DS-A0VN-01 5 56531814 56531814 G C GPBP1 Missense_Mutation p.E152Q 0.09 tolerated(0.29) possibly_damaging(0.88) TCGA-DS-A0VN-01 5 77524005 77524005 G T AP3B1 Missense_Mutation p.A113E 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-DS-A0VN-01 6 133048037 133048037 G A VNN3 Intron 0.28 TCGA-DS-A0VN-01 6 139206714 139206714 G A ECT2L Silent p.L700L 0.26 TCGA-DS-A0VN-01 6 155764498 155764498 G C NOX3 Missense_Mutation p.S132C 0.21 deleterious(0.05) possibly_damaging(0.894) TCGA-DS-A0VN-01 6 155764527 155764527 G A NOX3 Silent p.F122F 0.16 TCGA-DS-A0VN-01 6 27420477 27420477 G A ZNF184 Silent p.F287F 0.34 TCGA-DS-A0VN-01 6 90642090 90642090 G A BACH2 3'UTR 0.14 TCGA-DS-A0VN-01 7 126542611 126542611 T C GRM8 Missense_Mutation p.I381V 0.36 tolerated(0.68) benign(0.01) TCGA-DS-A0VN-01 7 129474842 129474842 C T UBE2H Missense_Mutation p.D163N 0.18 tolerated(0.09) benign(0.318) TCGA-DS-A0VN-01 7 2972191 2972191 C T CARD11 Silent p.L516L 0.32 TCGA-DS-A0VN-01 7 50468081 50468081 G A IKZF1 Missense_Mutation p.R397H 0.21 deleterious(0) probably_damaging(0.965) TCGA-DS-A0VN-01 7 64452419 64452419 G C ERV3-1 Nonsense_Mutation p.S329* 0.21 TCGA-DS-A0VN-01 7 72717312 72717312 C G NSUN5 3'UTR 0.11 TCGA-DS-A0VN-01 7 83640567 83640567 A G SEMA3A Missense_Mutation p.F286S 0.36 deleterious(0.01) probably_damaging(1) TCGA-DS-A0VN-01 7 95001611 95001611 C T PON3 Missense_Mutation p.E81K 0.30 tolerated(1) benign(0.008) TCGA-DS-A0VN-01 8 125551363 125551363 C G TATDN1 5'Flank 0.50 TCGA-DS-A0VN-01 8 13162751 13162751 G A DLC1 Intron 0.16 TCGA-DS-A0VN-01 8 144992837 144992837 C T PLEC Missense_Mutation p.E3855K 0.36 probably_damaging(0.974) TCGA-DS-A0VN-01 8 22056829 22056829 G C BMP1 Intron 0.19 TCGA-DS-A0VN-01 8 22470619 22470619 G A CCAR2 Missense_Mutation p.R225Q 0.32 tolerated(0.24) probably_damaging(0.996) TCGA-DS-A0VN-01 8 25319603 25319603 G A CDCA2 Missense_Mutation p.R89Q 0.34 deleterious(0) possibly_damaging(0.859) TCGA-DS-A0VN-01 8 400077 400077 C G FBXO25 Missense_Mutation p.Q157E 0.18 tolerated(0.27) benign(0.025) TCGA-DS-A0VN-01 8 59493158 59493158 T C SDCBP Missense_Mutation p.I278T 0.39 deleterious(0) benign(0.032) TCGA-DS-A0VN-01 8 81892678 81892678 C T PAG1 Missense_Mutation p.E310K 0.38 deleterious(0.01) possibly_damaging(0.629) TCGA-DS-A0VN-01 9 102626190 102626190 C A NR4A3 3'UTR 0.29 TCGA-DS-A0VN-01 9 115806340 115806340 C T ZFP37 Silent p.Q186Q 0.28 TCGA-DS-A0VN-01 9 131150142 131150142 G C URM1 Missense_Mutation p.E52Q 0.33 deleterious(0.02) possibly_damaging(0.771) TCGA-DS-A0VN-01 9 131344825 131344825 G A SPTAN1 Missense_Mutation p.R547H 0.15 tolerated(0.14) probably_damaging(0.988) TCGA-DS-A0VN-01 9 139637353 139637353 C T LCN10 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.043) TCGA-DS-A0VN-01 9 80855103 80855103 C T CEP78 Silent p.L140L 0.36 TCGA-DS-A0VN-01 9 99233290 99233290 C T HABP4 Intron 0.17 TCGA-DS-A0VN-01 X 102979469 102979469 C T GLRA4 Missense_Mutation p.M90I 0.39 deleterious(0) possibly_damaging(0.808) TCGA-DS-A0VN-01 X 11187767 11187767 G T ARHGAP6 Missense_Mutation p.T556N 0.17 deleterious(0) probably_damaging(0.999) TCGA-DS-A0VN-01 X 125685755 125685755 C A DCAF12L1 Silent p.A279A 0.48 TCGA-DS-A0VN-01 X 140785579 140785579 A G SPANXD 3'UTR 0.18 TCGA-DS-A0VN-01 X 18183227 18183227 C G BEND2 Missense_Mutation p.A768P 0.04 tolerated(0.16) benign(0.043) TCGA-DS-A0VN-01 X 69176994 69176994 C T EDA Intron 0.16 TCGA-DS-A0VN-01 X 71350359 71350359 G A RGAG4 Silent p.Y344Y 0.17 TCGA-DS-A0VN-01 X 9900723 9900723 C A SHROOM2 Missense_Mutation p.R1134S 0.12 tolerated(0.61) benign(0.184) TCGA-DS-A1OA-01 10 118314792 118314792 C T PNLIP Missense_Mutation p.P225L 0.37 deleterious(0.01) probably_damaging(0.966) TCGA-DS-A1OA-01 10 18937524 18937524 C T RP11-139J15.7 Silent p.L30L 0.32 TCGA-DS-A1OA-01 10 5032037 5032037 C T AKR1C2 3'UTR 0.15 TCGA-DS-A1OA-01 10 74128100 74128100 C T MICU1 Silent p.L428L 0.20 TCGA-DS-A1OA-01 11 105804604 105804604 G C GRIA4 Missense_Mutation p.E735Q 0.15 deleterious(0.02) possibly_damaging(0.63) TCGA-DS-A1OA-01 11 67564194 67564194 A G FAM86C2P RNA 0.31 TCGA-DS-A1OA-01 11 71277348 71277348 T G KRTAP5-10 3'UTR 0.10 TCGA-DS-A1OA-01 12 11174657 11174657 T C TAS2R19 Missense_Mutation p.I172V 0.37 tolerated(0.99) benign(0.015) TCGA-DS-A1OA-01 12 1995484 1995484 C T CACNA2D4 Missense_Mutation p.G300S 0.38 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OA-01 12 49165635 49165635 A G ADCY6 Missense_Mutation p.L970P 0.43 deleterious(0) probably_damaging(1) TCGA-DS-A1OA-01 12 55688303 55688303 G A OR6C6 Silent p.T238T 0.10 TCGA-DS-A1OA-01 12 55688775 55688775 A G OR6C6 Missense_Mutation p.I81T 0.13 tolerated_low_confidence(0.45) benign(0.002) TCGA-DS-A1OA-01 14 95669606 95669606 A G CLMN Missense_Mutation p.C694R 0.13 deleterious(0.03) benign(0) TCGA-DS-A1OA-01 14 99640539 99640539 G A BCL11B Silent p.G878G 0.35 TCGA-DS-A1OA-01 15 100332722 100332722 C T AC090825.1 3'Flank 0.44 TCGA-DS-A1OA-01 15 102299966 102299966 C A DNM1P47 RNA 0.11 TCGA-DS-A1OA-01 15 25470393 25470393 T G SNORD115-30 RNA 0.04 TCGA-DS-A1OA-01 15 72040915 72040915 C T THSD4 Silent p.L799L 0.18 TCGA-DS-A1OA-01 15 75043622 75043622 C T CYP1A2 Silent p.V308V 0.51 TCGA-DS-A1OA-01 15 78215296 78215296 T C RP11-114H24.7 3'Flank 0.13 TCGA-DS-A1OA-01 16 71571633 71571633 C T CHST4 Silent p.G351G 0.64 TCGA-DS-A1OA-01 17 18539709 18539709 A G TBC1D28 3'UTR 0.10 TCGA-DS-A1OA-01 17 21319440 21319440 C T KCNJ12 Silent p.I262I 0.10 TCGA-DS-A1OA-01 17 39673167 39673167 C A KRT15 Missense_Mutation p.G211C 0.36 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OA-01 17 40723642 40723642 G A MLX 3'UTR 0.34 TCGA-DS-A1OA-01 17 40991365 40991365 C T PSME3 Missense_Mutation p.R231W 0.26 tolerated(0.23) probably_damaging(0.993) TCGA-DS-A1OA-01 17 43192816 43192816 G A PLCD3 Silent p.P485P 0.27 TCGA-DS-A1OA-01 17 5041432 5041432 A G USP6 Silent p.T314T 0.09 TCGA-DS-A1OA-01 17 62855001 62855001 A G LRRC37A3 Missense_Mutation p.F1569L 0.16 tolerated(1) benign(0) TCGA-DS-A1OA-01 18 14184206 14184206 G A ANKRD20A5P Intron 0.16 TCGA-DS-A1OA-01 18 14478616 14478616 C T CXADRP3 RNA 0.18 TCGA-DS-A1OA-01 19 15917822 15917822 T C OR10H1 3'UTR 0.09 TCGA-DS-A1OA-01 19 20229473 20229473 G A ZNF90 Silent p.K370K 0.14 TCGA-DS-A1OA-01 19 20807056 20807056 T C ZNF626 3'UTR 0.12 TCGA-DS-A1OA-01 19 23542561 23542561 T C ZNF91 Missense_Mutation p.R1074G 0.07 tolerated(1) benign(0.008) TCGA-DS-A1OA-01 19 43697341 43697341 A G PSG4 3'UTR 0.15 TCGA-DS-A1OA-01 19 4510708 4510708 C T PLIN4 Silent p.P1074P 0.31 TCGA-DS-A1OA-01 19 45262839 45262839 G A BCL3 Silent p.P444P 0.64 TCGA-DS-A1OA-01 19 52443521 52443521 C T ZNF613 Silent p.L25L 0.34 TCGA-DS-A1OA-01 19 53344649 53344649 C T ZNF468 Missense_Mutation p.E300K 0.08 tolerated(1) benign(0) TCGA-DS-A1OA-01 19 53344650 53344650 A G ZNF468 Silent p.Y299Y 0.08 TCGA-DS-A1OA-01 19 53473439 53473439 G C ZNF702P RNA 0.10 TCGA-DS-A1OA-01 19 53958739 53958739 T C ZNF761 RNA 0.08 TCGA-DS-A1OA-01 19 55527059 55527059 G A GP6 Missense_Mutation p.S256F 0.10 tolerated_low_confidence(0.25) benign(0.004) TCGA-DS-A1OA-01 1 10363823 10363823 G A KIF1B Intron 0.35 TCGA-DS-A1OA-01 1 109793863 109793863 T C CELSR2 Missense_Mutation p.S388P 0.23 deleterious(0.03) possibly_damaging(0.53) TCGA-DS-A1OA-01 1 157667110 157667110 C T FCRL3 Missense_Mutation p.V222I 0.32 tolerated(0.77) benign(0.026) TCGA-DS-A1OA-01 1 15978347 15978347 C T DDI2 Silent p.D380D 0.23 TCGA-DS-A1OA-01 1 159869883 159869883 C G CCDC19 Intron 0.35 TCGA-DS-A1OA-01 1 235969712 235969712 G A LYST Silent p.C908C 0.38 TCGA-DS-A1OA-01 1 28792991 28792991 C T PHACTR4 Missense_Mutation p.H189Y 0.08 tolerated(0.37) benign(0.005) TCGA-DS-A1OA-01 20 52198399 52198399 C T ZNF217 Missense_Mutation p.D323N 0.36 deleterious(0) probably_damaging(1) TCGA-DS-A1OA-01 22 50278464 50278464 C T ZBED4 Missense_Mutation p.S385L 0.37 tolerated(0.72) benign(0.004) TCGA-DS-A1OA-01 2 132480169 132480169 A G C2orf27A 5'UTR 0.11 TCGA-DS-A1OA-01 2 139326556 139326556 C G SPOPL Missense_Mutation p.S362C 0.62 deleterious(0) possibly_damaging(0.764) TCGA-DS-A1OA-01 2 179251822 179251822 G A OSBPL6 Silent p.S729S 0.23 TCGA-DS-A1OA-01 2 179306420 179306420 A G PRKRA Missense_Mutation p.S176P 0.24 deleterious(0) possibly_damaging(0.893) TCGA-DS-A1OA-01 2 179443955 179443955 G A TTN Missense_Mutation p.S22601L 0.21 TCGA-DS-A1OA-01 2 179633660 179633660 G A TTN Missense_Mutation p.P2968L 0.70 TCGA-DS-A1OA-01 3 127358323 127358323 G A PODXL2 Silent p.E102E 0.26 TCGA-DS-A1OA-01 3 156865976 156865976 C T CCNL1 3'UTR 0.26 TCGA-DS-A1OA-01 3 189526299 189526299 A T TP63 Missense_Mutation p.K188M 0.64 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OA-01 3 189711979 189711979 C T LEPREL1 Missense_Mutation p.E243K 0.19 deleterious(0.01) benign(0.313) TCGA-DS-A1OA-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.43 deleterious(0) probably_damaging(1) TCGA-DS-A1OA-01 4 15627207 15627207 T C FBXL5 Silent p.V506V 0.17 TCGA-DS-A1OA-01 4 175896611 175896611 C T ADAM29 5'UTR 0.23 TCGA-DS-A1OA-01 4 37851828 37851828 C T PGM2 Missense_Mutation p.A479V 0.23 tolerated(0.17) benign(0.007) TCGA-DS-A1OA-01 4 38691571 38691571 G A KLF3 Intron 0.39 TCGA-DS-A1OA-01 4 71859521 71859521 G A DCK 5'UTR 0.29 TCGA-DS-A1OA-01 4 95147284 95147284 C G SMARCAD1 Missense_Mutation p.P69A 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.737) TCGA-DS-A1OA-01 5 140183220 140183220 C G PCDHA3 Intron 0.27 TCGA-DS-A1OA-01 5 37341341 37341341 A G NUP155 Missense_Mutation p.V366A 0.57 deleterious(0) benign(0.396) TCGA-DS-A1OA-01 5 40964939 40964939 G A C7 Missense_Mutation p.D616N 0.71 tolerated(0.56) benign(0.052) TCGA-DS-A1OA-01 6 154360931 154360931 G T OPRM1 Silent p.G177G 0.71 TCGA-DS-A1OA-01 6 25726560 25726560 G A HIST1H2AA Silent p.L66L 0.14 TCGA-DS-A1OA-01 6 25726564 25726564 A C HIST1H2AA Silent p.L64L 0.12 TCGA-DS-A1OA-01 6 26022093 26022093 T C HIST1H4A Silent p.L63L 0.08 TCGA-DS-A1OA-01 6 27806811 27806811 T C HIST1H2BN Silent p.S124S 0.16 TCGA-DS-A1OA-01 6 36652134 36652134 C T CDKN1A Missense_Mutation p.R86W 0.36 tolerated(0.22) benign(0.002) TCGA-DS-A1OA-01 6 40996165 40996165 C T UNC5CL Missense_Mutation p.E502K 0.30 tolerated_low_confidence(0.85) benign(0) TCGA-DS-A1OA-01 6 74228826 74228826 G A EEF1A1 Silent p.V150V 0.15 TCGA-DS-A1OA-01 7 105177177 105177177 A C RINT1 Missense_Mutation p.K85T 0.20 tolerated(0.1) benign(0.178) TCGA-DS-A1OA-01 7 105177178 105177178 A T RINT1 Missense_Mutation p.K85N 0.20 tolerated(0.3) benign(0.073) TCGA-DS-A1OA-01 7 57188077 57188077 T C ZNF479 Missense_Mutation p.R349G 0.15 tolerated(1) benign(0) TCGA-DS-A1OA-01 7 63538449 63538449 T A ZNF727 Missense_Mutation p.I341N 0.08 deleterious(0.04) probably_damaging(0.991) TCGA-DS-A1OA-01 7 63538450 63538450 T A ZNF727 Silent p.I341I 0.09 TCGA-DS-A1OA-01 7 64168019 64168019 A G ZNF107 Missense_Mutation p.D446G 0.10 tolerated(1) benign(0) TCGA-DS-A1OA-01 7 64168637 64168637 A C ZNF107 Missense_Mutation p.N652T 0.09 tolerated(1) benign(0.013) TCGA-DS-A1OA-01 7 73183783 73183783 G A CLDN3 Silent p.S199S 0.12 TCGA-DS-A1OA-01 7 98452918 98452918 G T TMEM130 Missense_Mutation p.P250T 0.53 deleterious(0.04) probably_damaging(0.987) TCGA-DS-A1OA-01 9 120475463 120475463 C T TLR4 Missense_Mutation p.L353F 0.24 deleterious(0.02) probably_damaging(0.965) TCGA-DS-A1OA-01 9 130674603 130674603 C G ST6GALNAC4 Silent p.T185T 0.07 TCGA-DS-A1OA-01 9 131072104 131072104 C G TRUB2 Missense_Mutation p.E241Q 0.24 deleterious(0.04) probably_damaging(0.994) TCGA-DS-A1OA-01 9 65507531 65507531 G C SPATA31A7 Missense_Mutation p.S95W 0.09 tolerated(0.25) benign(0) TCGA-DS-A1OA-01 9 84608110 84608110 A T SPATA31D1 Missense_Mutation p.T909S 0.12 tolerated(0.57) benign(0.002) TCGA-DS-A1OA-01 X 107814650 107814650 G A COL4A5 Missense_Mutation p.R131H 0.46 unknown(0) TCGA-DS-A1OA-01 X 151899695 151899695 T C MAGEA12 3'UTR 0.21 TCGA-DS-A1OA-01 X 99663130 99663130 G C PCDH19 Missense_Mutation p.P156A 0.36 deleterious(0.02) probably_damaging(0.93) TCGA-DS-A1OB-01 10 100150721 100150721 C T PYROXD2 Intron 0.23 TCGA-DS-A1OB-01 10 102795413 102795413 C T SFXN3 Silent p.L111L 0.14 TCGA-DS-A1OB-01 10 103867711 103867711 G A LDB1 3'UTR 0.33 TCGA-DS-A1OB-01 10 104184490 104184490 G A CUEDC2 Missense_Mutation p.S45L 0.13 deleterious(0.02) probably_damaging(0.984) TCGA-DS-A1OB-01 10 104230634 104230634 C A TMEM180 Nonsense_Mutation p.S155* 0.21 TCGA-DS-A1OB-01 10 108336932 108336932 A T SORCS1 3'Flank 0.36 TCGA-DS-A1OB-01 10 111667465 111667465 G A XPNPEP1 Missense_Mutation p.S77L 0.34 deleterious(0) probably_damaging(0.989) TCGA-DS-A1OB-01 10 114053520 114053520 G C TECTB Missense_Mutation p.E170Q 0.25 tolerated(0.42) benign(0.04) TCGA-DS-A1OB-01 10 115971725 115971725 G A TDRD1 Silent p.L587L 0.18 TCGA-DS-A1OB-01 10 12203054 12203054 C T SEC61A2 Silent p.F367F 0.27 TCGA-DS-A1OB-01 10 123683809 123683809 G A ATE1 Nonsense_Mutation p.Q48* 0.22 TCGA-DS-A1OB-01 10 123844933 123844933 C T TACC2 Missense_Mutation p.S973F 0.28 benign(0.426) TCGA-DS-A1OB-01 10 127526851 127526851 C G DHX32 Missense_Mutation p.E663Q 0.20 tolerated(0.07) probably_damaging(1) TCGA-DS-A1OB-01 10 127526941 127526941 C G DHX32 Missense_Mutation p.D633H 0.24 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 10 134664692 134664692 C T TTC40 Missense_Mutation p.E1898K 0.30 tolerated(0.14) benign(0.019) TCGA-DS-A1OB-01 10 20466010 20466010 G A PLXDC2 Missense_Mutation p.M322I 0.26 tolerated(0.2) benign(0.05) TCGA-DS-A1OB-01 10 30318354 30318354 C G KIAA1462 Silent p.L241L 0.39 TCGA-DS-A1OB-01 10 46122404 46122404 G A ZFAND4 Silent p.P289P 0.35 TCGA-DS-A1OB-01 10 46261222 46261222 G C FAM21C Missense_Mutation p.K611N 0.24 deleterious(0.01) possibly_damaging(0.628) TCGA-DS-A1OB-01 10 48388474 48388474 C G RBP3 Missense_Mutation p.E802Q 0.33 tolerated(0.13) possibly_damaging(0.728) TCGA-DS-A1OB-01 10 5020085 5020085 A G AKR1C1 3'UTR 0.29 TCGA-DS-A1OB-01 10 50870739 50870739 C A CHAT Missense_Mutation p.L630M 0.28 tolerated(0.31) benign(0.115) TCGA-DS-A1OB-01 10 6063586 6063586 C G IL2RA Missense_Mutation p.Q146H 0.25 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 10 62648006 62648006 G A RHOBTB1 Missense_Mutation p.R474W 0.45 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 10 70507010 70507010 G A CCAR1 Missense_Mutation p.R204K 0.29 tolerated(0.08) probably_damaging(0.946) TCGA-DS-A1OB-01 10 70509332 70509332 G T CCAR1 Missense_Mutation p.R336S 0.46 deleterious(0) possibly_damaging(0.879) TCGA-DS-A1OB-01 10 74104759 74104759 C T DNAJB12 Missense_Mutation p.G121E 0.32 tolerated(0.19) benign(0.255) TCGA-DS-A1OB-01 10 74673095 74673095 G A OIT3 Missense_Mutation p.E274K 0.30 tolerated(0.37) possibly_damaging(0.842) TCGA-DS-A1OB-01 10 88768734 88768734 C A RP11-96C23.10 3'Flank 0.21 TCGA-DS-A1OB-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.50 TCGA-DS-A1OB-01 10 97987176 97987176 G A BLNK Silent p.G117G 0.30 TCGA-DS-A1OB-01 11 108032197 108032197 C T NPAT Missense_Mutation p.E1206K 0.09 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 11 111405155 111405155 C T C11orf88 Missense_Mutation p.P167S 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-DS-A1OB-01 11 11374108 11374108 C T CSNK2A3 Missense_Mutation p.E187K 0.44 deleterious(0.02) possibly_damaging(0.569) TCGA-DS-A1OB-01 11 118984385 118984385 G A C2CD2L Silent p.E484E 0.24 TCGA-DS-A1OB-01 11 121448039 121448039 C T SORL1 Silent p.C1170C 0.22 TCGA-DS-A1OB-01 11 123900674 123900674 G A OR10G8 Silent p.R115R 0.09 TCGA-DS-A1OB-01 11 123901211 123901211 G A OR10G8 Silent p.V294V 0.09 TCGA-DS-A1OB-01 11 123908839 123908839 T C OR10G7 Silent p.R290R 0.12 TCGA-DS-A1OB-01 11 123909011 123909011 C T OR10G7 Missense_Mutation p.R233K 0.11 deleterious(0.01) benign(0.232) TCGA-DS-A1OB-01 11 123909400 123909400 G A OR10G7 Silent p.F103F 0.09 TCGA-DS-A1OB-01 11 123909514 123909514 G C OR10G7 Silent p.S65S 0.10 TCGA-DS-A1OB-01 11 123909543 123909543 G T OR10G7 Missense_Mutation p.P56T 0.12 deleterious(0) benign(0.157) TCGA-DS-A1OB-01 11 1269323 1269323 C T MUC5B Missense_Mutation p.T3738M 0.13 unknown(0) TCGA-DS-A1OB-01 11 130343469 130343469 C T ADAMTS15 Missense_Mutation p.S869F 0.39 tolerated(0.69) benign(0.192) TCGA-DS-A1OB-01 11 1642784 1642784 G A KRTAP5-4 Silent p.C180C 0.10 TCGA-DS-A1OB-01 11 1642880 1642880 A G KRTAP5-4 Silent p.S148S 0.07 TCGA-DS-A1OB-01 11 20101705 20101705 G C NAV2 Missense_Mutation p.V1815L 0.10 tolerated(0.2) probably_damaging(0.994) TCGA-DS-A1OB-01 11 2993412 2993412 G A NAP1L4 Missense_Mutation p.H79Y 0.12 deleterious(0.04) possibly_damaging(0.883) TCGA-DS-A1OB-01 11 30034141 30034141 C T KCNA4 Missense_Mutation p.E29K 0.23 tolerated_low_confidence(0.07) unknown(0) TCGA-DS-A1OB-01 11 309109 309109 T C IFITM2 Missense_Mutation p.F115L 0.19 tolerated(1) benign(0.001) TCGA-DS-A1OB-01 11 309223 309223 T C IFITM2 3'UTR 0.16 TCGA-DS-A1OB-01 11 309225 309225 T A IFITM2 3'UTR 0.16 TCGA-DS-A1OB-01 11 31128364 31128364 G C DCDC1 Silent p.V577V 0.30 TCGA-DS-A1OB-01 11 314246 314246 A C IFITM1 Missense_Mutation p.N26H 0.10 tolerated(0.39) possibly_damaging(0.904) TCGA-DS-A1OB-01 11 314253 314253 A G IFITM1 Missense_Mutation p.H28R 0.09 tolerated(1) benign(0.006) TCGA-DS-A1OB-01 11 31436403 31436403 G T DNAJC24 Nonsense_Mutation p.E53* 0.34 TCGA-DS-A1OB-01 11 315009 315009 C T IFITM1 Silent p.L92L 0.11 TCGA-DS-A1OB-01 11 45671281 45671281 G A CHST1 Missense_Mutation p.S398L 0.44 deleterious(0) benign(0.43) TCGA-DS-A1OB-01 11 48238785 48238785 C T OR4B1 Silent p.L142L 0.31 TCGA-DS-A1OB-01 11 4967614 4967614 G C OR51A4 Silent p.L239L 0.13 TCGA-DS-A1OB-01 11 5246954 5246954 G T HBB Silent p.L106L 0.33 TCGA-DS-A1OB-01 11 55032734 55032734 C G TRIM48 Missense_Mutation p.Q135E 0.59 tolerated(0.16) benign(0.124) TCGA-DS-A1OB-01 11 55135530 55135530 C T OR4A15 Silent p.V57V 0.46 TCGA-DS-A1OB-01 11 5664044 5664044 C T TRIM34 Intron 0.35 TCGA-DS-A1OB-01 11 5701146 5701147 - CTG TRIM5 In_Frame_Ins p.P87_E88insQ 0.07 TCGA-DS-A1OB-01 11 57428263 57428263 C G CLP1 Missense_Mutation p.F211L 0.39 tolerated(0.39) benign(0.004) TCGA-DS-A1OB-01 11 57971456 57971456 T C OR1S2 Missense_Mutation p.I66M 0.08 deleterious(0.01) benign(0.002) TCGA-DS-A1OB-01 11 57971457 57971457 A G OR1S2 Missense_Mutation p.I66T 0.08 tolerated(0.21) benign(0) TCGA-DS-A1OB-01 11 57982413 57982413 C T OR1S1 Missense_Mutation p.T66M 0.08 deleterious(0.01) benign(0.017) TCGA-DS-A1OB-01 11 61615738 61615738 C A FADS2 Silent p.G242G 0.32 TCGA-DS-A1OB-01 11 621216 621216 G T CDHR5 Missense_Mutation p.T218N 0.36 deleterious(0) probably_damaging(0.978) TCGA-DS-A1OB-01 11 621225 621225 G A CDHR5 Missense_Mutation p.P215L 0.30 deleterious(0) probably_damaging(0.991) TCGA-DS-A1OB-01 11 62402461 62402461 G C GANAB Missense_Mutation p.S131C 0.18 tolerated(0.2) benign(0.159) TCGA-DS-A1OB-01 11 63276290 63276290 C T LGALS12 Missense_Mutation p.R90W 0.16 deleterious(0) possibly_damaging(0.888) TCGA-DS-A1OB-01 11 640646 640646 C T DRD4 3'UTR 0.43 TCGA-DS-A1OB-01 11 64361020 64361020 C T SLC22A12 Missense_Mutation p.T217M 0.23 deleterious(0.03) probably_damaging(0.985) TCGA-DS-A1OB-01 11 64627728 64627728 C T EHD1 Missense_Mutation p.D195N 0.48 deleterious(0) probably_damaging(0.982) TCGA-DS-A1OB-01 11 64802428 64802428 C T SNX15 Silent p.F122F 0.38 TCGA-DS-A1OB-01 11 64803073 64803073 C T SNX15 Missense_Mutation p.S201F 0.41 tolerated(0.3) benign(0.429) TCGA-DS-A1OB-01 11 64882211 64882211 G A TM7SF2 Missense_Mutation p.M210I 0.27 tolerated(0.14) benign(0.003) TCGA-DS-A1OB-01 11 64940221 64940221 C T SPDYC Nonsense_Mutation p.Q195* 0.39 TCGA-DS-A1OB-01 11 65380675 65380675 C T MAP3K11 Missense_Mutation p.E185K 0.50 tolerated(0.66) benign(0.283) TCGA-DS-A1OB-01 11 66618157 66618157 G T PC Missense_Mutation p.P821T 0.26 tolerated(0.18) benign(0.056) TCGA-DS-A1OB-01 11 66618201 66618201 G C PC Nonsense_Mutation p.S806* 0.28 TCGA-DS-A1OB-01 11 66618644 66618644 C G PC Missense_Mutation p.G697A 0.24 deleterious(0) possibly_damaging(0.867) TCGA-DS-A1OB-01 11 66625428 66625428 G A LRFN4 Missense_Mutation p.M71I 0.23 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OB-01 11 66638577 66638577 G A PC Silent p.F193F 0.20 TCGA-DS-A1OB-01 11 67208906 67208906 G A CORO1B Silent p.L178L 0.27 TCGA-DS-A1OB-01 11 70332290 70332290 C T SHANK2 Missense_Mutation p.V1371M 0.12 tolerated(0.11) benign(0.005) TCGA-DS-A1OB-01 11 75509276 75509276 G C DGAT2 Missense_Mutation p.D272H 0.20 tolerated(0.48) benign(0.147) TCGA-DS-A1OB-01 11 78381234 78381234 G A TENM4 Silent p.T2052T 0.20 TCGA-DS-A1OB-01 11 82644369 82644369 G A C11orf82 Silent p.Q663Q 0.35 TCGA-DS-A1OB-01 11 9166554 9166554 C T DENND5A Missense_Mutation p.G1037E 0.43 deleterious(0) probably_damaging(0.994) TCGA-DS-A1OB-01 12 101880137 101880137 G A SPIC Missense_Mutation p.R112Q 0.44 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 12 104192449 104192449 G A NT5DC3 Silent p.L177L 0.35 TCGA-DS-A1OB-01 12 104698554 104698554 C G EID3 Missense_Mutation p.P281R 0.17 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 12 10588429 10588429 G A KLRC2 Nonsense_Mutation p.Q53* 0.43 TCGA-DS-A1OB-01 12 118474304 118474304 C T WSB2 Nonsense_Mutation p.W224* 0.49 TCGA-DS-A1OB-01 12 120509466 120509466 C T CCDC64 Missense_Mutation p.S317F 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-DS-A1OB-01 12 120578783 120578783 C G GCN1L1 Missense_Mutation p.E1958D 0.12 benign(0.174) TCGA-DS-A1OB-01 12 123430680 123430680 G A ABCB9 Silent p.F381F 0.10 TCGA-DS-A1OB-01 12 124341666 124341666 C T DNAH10 Missense_Mutation p.P2050S 0.16 probably_damaging(0.999) TCGA-DS-A1OB-01 12 126128750 126128750 C T TMEM132B Silent p.L517L 0.19 TCGA-DS-A1OB-01 12 133233766 133233766 G A POLE Nonsense_Mutation p.Q1180* 0.60 TCGA-DS-A1OB-01 12 13716134 13716134 C T GRIN2B Silent p.E1346E 0.12 TCGA-DS-A1OB-01 12 26217868 26217868 G A RASSF8 Missense_Mutation p.E181K 0.53 deleterious(0.01) benign(0.22) TCGA-DS-A1OB-01 12 2983318 2983318 G A FOXM1 Silent p.I109I 0.49 TCGA-DS-A1OB-01 12 42862582 42862582 G A PRICKLE1 Missense_Mutation p.A145V 0.56 deleterious(0.04) possibly_damaging(0.894) TCGA-DS-A1OB-01 12 49224397 49224397 G A DDX23 Missense_Mutation p.S773F 0.51 deleterious(0) possibly_damaging(0.836) TCGA-DS-A1OB-01 12 49428629 49428629 G A KMT2D Nonsense_Mutation p.Q3441* 0.54 TCGA-DS-A1OB-01 12 49934761 49934761 C T KCNH3 Silent p.L52L 0.15 TCGA-DS-A1OB-01 12 52380709 52380709 G A ACVR1B Missense_Mutation p.R456Q 0.11 deleterious(0) possibly_damaging(0.823) TCGA-DS-A1OB-01 12 52681407 52681407 C T KRT81 Silent p.T333T 0.09 TCGA-DS-A1OB-01 12 52699041 52699041 G A KRT86 Silent p.Q251Q 0.12 TCGA-DS-A1OB-01 12 52699116 52699116 C T KRT86 Silent p.A276A 0.08 TCGA-DS-A1OB-01 12 52709784 52709784 T C KRT83 Silent p.Q385Q 0.14 TCGA-DS-A1OB-01 12 52709805 52709805 G A KRT83 Silent p.G378G 0.11 TCGA-DS-A1OB-01 12 52710279 52710279 T C KRT83 Silent p.T338T 0.18 TCGA-DS-A1OB-01 12 52710357 52710357 T C KRT83 Silent p.T312T 0.16 TCGA-DS-A1OB-01 12 52710697 52710697 A G KRT83 Silent p.Y287Y 0.10 TCGA-DS-A1OB-01 12 52710720 52710720 C T KRT83 Missense_Mutation p.V280I 0.11 tolerated(1) benign(0.021) TCGA-DS-A1OB-01 12 53085194 53085194 C A KRT77 Missense_Mutation p.G498C 0.16 deleterious(0.03) unknown(0) TCGA-DS-A1OB-01 12 53803310 53803310 C T SP1 Missense_Mutation p.S670L 0.45 deleterious(0) benign(0) TCGA-DS-A1OB-01 12 54920358 54920358 G A NCKAP1L Missense_Mutation p.V735I 0.52 deleterious(0.01) benign(0.02) TCGA-DS-A1OB-01 12 56348016 56348016 G A PMEL Silent p.L663L 0.42 TCGA-DS-A1OB-01 12 57037211 57037211 G A ATP5B Silent p.I256I 0.10 TCGA-DS-A1OB-01 12 6161945 6161945 C T VWF Silent p.L650L 0.53 TCGA-DS-A1OB-01 12 657257 657257 G A B4GALNT3 Missense_Mutation p.V259M 0.61 deleterious(0.01) probably_damaging(1) TCGA-DS-A1OB-01 12 67696111 67696111 G A CAND1 Missense_Mutation p.D337N 0.50 tolerated(0.16) benign(0.031) TCGA-DS-A1OB-01 12 6978465 6978465 G A TPI1 Missense_Mutation p.G160E 0.49 tolerated(0.05) possibly_damaging(0.786) TCGA-DS-A1OB-01 12 7055084 7055084 G A C12orf57 Silent p.%3D 0.50 TCGA-DS-A1OB-01 12 80199372 80199372 C A PPP1R12A Missense_Mutation p.R667I 0.54 deleterious(0) probably_damaging(0.996) TCGA-DS-A1OB-01 12 91502498 91502498 C T LUM Missense_Mutation p.E87K 0.58 tolerated(0.06) benign(0.021) TCGA-DS-A1OB-01 12 91546896 91546896 C T DCN Silent p.L241L 0.13 TCGA-DS-A1OB-01 13 102359193 102359193 C T ITGBL1 Missense_Mutation p.T407M 0.19 deleterious(0.02) possibly_damaging(0.886) TCGA-DS-A1OB-01 13 26411381 26411381 G T ATP8A2 Missense_Mutation p.Q945H 0.07 deleterious(0.03) probably_damaging(0.988) TCGA-DS-A1OB-01 13 27333593 27333593 G A GPR12 Silent p.F124F 0.28 TCGA-DS-A1OB-01 13 31903641 31903641 C T B3GALTL Missense_Mutation p.R445W 0.14 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 13 36223806 36223806 G A NBEA Silent p.Q2574Q 0.28 TCGA-DS-A1OB-01 13 41331064 41331064 C G MRPS31 Missense_Mutation p.D229H 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-DS-A1OB-01 13 52158919 52158919 C A WDFY2 Silent p.I32I 0.24 TCGA-DS-A1OB-01 13 53216690 53216690 G A HNRNPA1L2 Silent p.L21L 0.24 TCGA-DS-A1OB-01 13 58207788 58207788 G A PCDH17 Missense_Mutation p.V370I 0.43 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 13 76395707 76395707 C G LMO7 Missense_Mutation p.Q635E 0.20 deleterious(0.01) benign(0.103) TCGA-DS-A1OB-01 13 88330310 88330310 C G SLITRK5 Missense_Mutation p.F889L 0.19 tolerated(0.2) benign(0.027) TCGA-DS-A1OB-01 14 100615857 100615857 G C DEGS2 Missense_Mutation p.I91M 0.38 deleterious(0.01) possibly_damaging(0.883) TCGA-DS-A1OB-01 14 105860898 105860898 C T PACS2 Silent p.I868I 0.36 TCGA-DS-A1OB-01 14 20612192 20612192 C G OR4N5 Missense_Mutation p.Q100E 0.26 deleterious(0) probably_damaging(0.989) TCGA-DS-A1OB-01 14 21928535 21928535 A G RAB2B 3'UTR 0.24 TCGA-DS-A1OB-01 14 23567144 23567144 G A C14orf119 Missense_Mutation p.E93K 0.20 tolerated(0.11) benign(0.082) TCGA-DS-A1OB-01 14 23886774 23886774 C T MYH7 Missense_Mutation p.D1431N 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-DS-A1OB-01 14 24517949 24517949 G C LRRC16B 5'Flank 0.09 TCGA-DS-A1OB-01 14 24546495 24546495 G C CPNE6 Missense_Mutation p.D478H 0.37 tolerated(0.06) probably_damaging(0.942) TCGA-DS-A1OB-01 14 24656686 24656686 C T IPO4 Missense_Mutation p.E170K 0.23 deleterious(0.01) benign(0.028) TCGA-DS-A1OB-01 14 33242914 33242914 C T AKAP6 Nonsense_Mutation p.R1135* 0.14 TCGA-DS-A1OB-01 14 38679446 38679446 G A SSTR1 Nonsense_Mutation p.W284* 0.38 TCGA-DS-A1OB-01 14 45590794 45590794 C T FKBP3 Silent p.L116L 0.18 TCGA-DS-A1OB-01 14 50272833 50272833 C T NEMF Missense_Mutation p.R588Q 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-DS-A1OB-01 14 53112903 53112903 C T ERO1L Missense_Mutation p.E439K 0.68 deleterious(0) possibly_damaging(0.673) TCGA-DS-A1OB-01 14 67779271 67779271 G A MPP5 Missense_Mutation p.D357N 0.71 deleterious(0) possibly_damaging(0.886) TCGA-DS-A1OB-01 14 74179135 74179135 C T PNMA1 3'UTR 0.44 TCGA-DS-A1OB-01 14 74179643 74179643 C G PNMA1 Missense_Mutation p.E234Q 0.39 tolerated(0.06) probably_damaging(0.996) TCGA-DS-A1OB-01 14 74179760 74179760 C A PNMA1 Missense_Mutation p.D195Y 0.30 deleterious(0) probably_damaging(0.99) TCGA-DS-A1OB-01 14 74179823 74179823 C T PNMA1 Missense_Mutation p.E174K 0.32 deleterious(0.03) benign(0.425) TCGA-DS-A1OB-01 14 74179825 74179825 C T PNMA1 Missense_Mutation p.G173E 0.33 tolerated(0.58) benign(0.251) TCGA-DS-A1OB-01 14 74180287 74180287 C G PNMA1 Missense_Mutation p.R19T 0.37 deleterious(0.03) benign(0.142) TCGA-DS-A1OB-01 14 74180348 74180348 C T PNMA1 5'UTR 0.34 TCGA-DS-A1OB-01 14 74180501 74180501 C G PNMA1 5'UTR 0.46 TCGA-DS-A1OB-01 14 77844620 77844620 G A SAMD15 Missense_Mutation p.E287K 0.37 tolerated(0.05) possibly_damaging(0.786) TCGA-DS-A1OB-01 14 81251511 81251511 G A CEP128 Missense_Mutation p.L647F 0.24 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 14 94417495 94417495 C T ASB2 Missense_Mutation p.E244K 0.12 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OB-01 14 95669509 95669509 A G CLMN Missense_Mutation p.L726P 0.12 deleterious(0.03) probably_damaging(0.982) TCGA-DS-A1OB-01 14 95669555 95669555 T G CLMN Missense_Mutation p.K711Q 0.10 deleterious(0.04) possibly_damaging(0.448) TCGA-DS-A1OB-01 14 95669606 95669606 A G CLMN Missense_Mutation p.C694R 0.15 deleterious(0.03) benign(0) TCGA-DS-A1OB-01 14 95669620 95669620 C T CLMN Missense_Mutation p.S689N 0.22 tolerated(1) benign(0.001) TCGA-DS-A1OB-01 14 97312495 97312495 G A VRK1 Missense_Mutation p.E94K 0.39 deleterious(0) benign(0.25) TCGA-DS-A1OB-01 14 97319474 97319474 C T VRK1 Missense_Mutation p.L183F 0.21 deleterious(0) probably_damaging(0.99) TCGA-DS-A1OB-01 15 100657128 100657128 G A ADAMTS17 Silent p.F604F 0.11 TCGA-DS-A1OB-01 15 25335140 25335140 C T SNHG14 Intron 0.14 TCGA-DS-A1OB-01 15 33927868 33927868 G A RYR3 Missense_Mutation p.E1077K 0.20 benign(0.242) TCGA-DS-A1OB-01 15 42855983 42855983 C T HAUS2 Silent p.F142F 0.31 TCGA-DS-A1OB-01 15 43701198 43701198 G A TP53BP1 Missense_Mutation p.H1833Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-DS-A1OB-01 15 45408805 45408805 C G DUOXA2 Missense_Mutation p.N144K 0.09 tolerated(0.44) benign(0.003) TCGA-DS-A1OB-01 15 45408808 45408808 A T DUOXA2 Silent p.A145A 0.09 TCGA-DS-A1OB-01 15 49030472 49030472 C G CEP152 Missense_Mutation p.D1703H 0.25 deleterious(0) probably_damaging(0.98) TCGA-DS-A1OB-01 15 63866280 63866280 G C USP3 Missense_Mutation p.G315A 0.16 deleterious(0.02) probably_damaging(1) TCGA-DS-A1OB-01 15 64717736 64717736 C G TRIP4 Intron 0.28 TCGA-DS-A1OB-01 15 65676668 65676668 C T IGDCC4 Silent p.G1144G 0.30 TCGA-DS-A1OB-01 15 66782828 66782828 C G SNAPC5 3'Flank 0.23 TCGA-DS-A1OB-01 15 68119375 68119375 C T SKOR1 Silent p.F510F 0.26 TCGA-DS-A1OB-01 15 77473208 77473208 G A PEAK1 Missense_Mutation p.S354F 0.25 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 15 78215300 78215300 T C RP11-114H24.7 3'Flank 0.08 TCGA-DS-A1OB-01 15 83518475 83518475 C T HOMER2 Missense_Mutation p.D353N 0.26 deleterious(0.03) possibly_damaging(0.642) TCGA-DS-A1OB-01 15 85370724 85370724 C T ALPK3 Silent p.F266F 0.15 TCGA-DS-A1OB-01 15 85383501 85383501 G A ALPK3 Missense_Mutation p.E533K 0.26 deleterious_low_confidence(0.04) benign(0.105) TCGA-DS-A1OB-01 15 85400629 85400629 C A ALPK3 Missense_Mutation p.P1089Q 0.26 deleterious_low_confidence(0.01) benign(0.356) TCGA-DS-A1OB-01 15 85401044 85401044 G C ALPK3 Missense_Mutation p.Q1227H 0.23 deleterious(0) probably_damaging(0.987) TCGA-DS-A1OB-01 15 86311623 86311623 C T KLHL25 Silent p.T473T 0.27 TCGA-DS-A1OB-01 15 86940712 86940712 C T AGBL1 Silent p.L784L 0.27 TCGA-DS-A1OB-01 16 11850101 11850101 C T ZC3H7A Missense_Mutation p.E852K 0.20 deleterious(0.01) possibly_damaging(0.619) TCGA-DS-A1OB-01 16 11933719 11933719 C T RSL1D1 Missense_Mutation p.D327N 0.26 tolerated(0.39) benign(0.013) TCGA-DS-A1OB-01 16 19547648 19547648 C T CCP110 Silent p.V219V 0.37 TCGA-DS-A1OB-01 16 2030390 2030390 C G NOXO1 Missense_Mutation p.E132Q 0.36 deleterious(0.04) possibly_damaging(0.571) TCGA-DS-A1OB-01 16 20975920 20975920 C T DNAH3 Missense_Mutation p.E3096K 0.25 deleterious(0) probably_damaging(0.992) TCGA-DS-A1OB-01 16 21065785 21065785 C A DNAH3 Missense_Mutation p.G1332V 0.25 tolerated(0.22) probably_damaging(0.932) TCGA-DS-A1OB-01 16 2153502 2153502 T C PKD1 Silent p.A2852A 0.09 TCGA-DS-A1OB-01 16 21979996 21979996 G C UQCRC2 Missense_Mutation p.L220F 0.36 deleterious(0) possibly_damaging(0.845) TCGA-DS-A1OB-01 16 3063579 3063579 T G CLDN9 Silent p.A72A 0.08 TCGA-DS-A1OB-01 16 3063621 3063621 T C CLDN9 Silent p.I86I 0.09 TCGA-DS-A1OB-01 16 3063859 3063859 C T CLDN9 Silent p.L166L 0.10 TCGA-DS-A1OB-01 16 3065846 3065846 G C CLDN6 Silent p.T59T 0.08 TCGA-DS-A1OB-01 16 30715591 30715591 G A SRCAP Silent p.P87P 0.28 TCGA-DS-A1OB-01 16 3140124 3140124 G A ZSCAN10 Silent p.C382C 0.30 TCGA-DS-A1OB-01 16 3647819 3647819 C T SLX4 Missense_Mutation p.E449K 0.12 tolerated(0.37) benign(0.064) TCGA-DS-A1OB-01 16 3817811 3817811 C T CREBBP Missense_Mutation p.E1054K 0.34 unknown(0) TCGA-DS-A1OB-01 16 50383954 50383954 G C BRD7 Missense_Mutation p.Q191E 0.45 deleterious(0.01) possibly_damaging(0.797) TCGA-DS-A1OB-01 16 55362931 55362931 G A IRX6 Silent p.E347E 0.53 TCGA-DS-A1OB-01 16 56692606 56692606 T C MT1F Silent p.A16A 0.09 TCGA-DS-A1OB-01 16 56701269 56701269 T C MT1G Missense_Mutation p.S17G 0.05 tolerated(1) unknown(0) TCGA-DS-A1OB-01 16 57284357 57284357 G A ARL2BP Missense_Mutation p.D110N 0.42 tolerated(0.28) benign(0.044) TCGA-DS-A1OB-01 16 67219309 67219309 C G EXOC3L1 Missense_Mutation p.R527S 0.41 deleterious(0) benign(0.386) TCGA-DS-A1OB-01 16 68266391 68266391 G C ESRP2 Silent p.L279L 0.61 TCGA-DS-A1OB-01 16 69988311 69988311 G A CLEC18A Silent p.A97A 0.17 TCGA-DS-A1OB-01 16 77228867 77228867 G A MON1B Missense_Mutation p.E371K 0.53 tolerated(0.65) benign(0.374) TCGA-DS-A1OB-01 16 89651918 89651918 C T CPNE7 Missense_Mutation p.S288F 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-DS-A1OB-01 17 10293750 10293750 G A MYH8 3'UTR 0.45 TCGA-DS-A1OB-01 17 11604457 11604457 C T DNAH9 Missense_Mutation p.H1682Y 0.20 benign(0.047) TCGA-DS-A1OB-01 17 17106095 17106095 C T PLD6 Missense_Mutation p.E249K 0.18 tolerated_low_confidence(0.96) benign(0.001) TCGA-DS-A1OB-01 17 17399472 17399472 C G RASD1 Missense_Mutation p.K8N 0.32 deleterious_low_confidence(0.04) benign(0.016) TCGA-DS-A1OB-01 17 17721156 17721156 C T SREBF1 Missense_Mutation p.E450K 0.15 tolerated(0.11) probably_damaging(0.967) TCGA-DS-A1OB-01 17 17754204 17754204 C T TOM1L2 Intron 0.31 TCGA-DS-A1OB-01 17 19283162 19283162 C T MAPK7 Silent p.L100L 0.41 TCGA-DS-A1OB-01 17 25904637 25904637 C T KSR1 Silent p.L27L 0.35 TCGA-DS-A1OB-01 17 26712111 26712111 G C SARM1 Missense_Mutation p.D449H 0.51 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 17 27620891 27620891 C T NUFIP2 Missense_Mutation p.E63K 0.27 tolerated(0.15) probably_damaging(0.982) TCGA-DS-A1OB-01 17 31322453 31322453 C T SPACA3 Missense_Mutation p.P21S 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.641) TCGA-DS-A1OB-01 17 33738920 33738920 G C SLFN12 Missense_Mutation p.P392A 0.19 deleterious(0.01) possibly_damaging(0.787) TCGA-DS-A1OB-01 17 34893555 34893555 C G PIGW Nonsense_Mutation p.S202* 0.22 TCGA-DS-A1OB-01 17 36873806 36873806 C T MLLT6 Silent p.L591L 0.29 TCGA-DS-A1OB-01 17 37627647 37627647 C T CDK12 Missense_Mutation p.S521L 0.41 benign(0) TCGA-DS-A1OB-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.28 deleterious(0) probably_damaging(0.994) TCGA-DS-A1OB-01 17 3819570 3819570 C T P2RX1 5'UTR 0.61 TCGA-DS-A1OB-01 17 38450670 38450670 G T CDC6 Missense_Mutation p.R333I 0.24 deleterious(0.04) benign(0.021) TCGA-DS-A1OB-01 17 38638631 38638631 G A TNS4 Silent p.I513I 0.26 TCGA-DS-A1OB-01 17 39253962 39253962 G A KRTAP4-8 Silent p.C125C 0.12 TCGA-DS-A1OB-01 17 39254134 39254134 C G KRTAP4-8 Missense_Mutation p.S68T 0.09 tolerated(0.28) unknown(0) TCGA-DS-A1OB-01 17 39644977 39644977 C T KRT36 Splice_Site p.X154_splice 0.20 TCGA-DS-A1OB-01 17 39963120 39963120 G A LEPREL4 Silent p.L358L 0.32 TCGA-DS-A1OB-01 17 39976637 39976637 G A FKBP10 Missense_Mutation p.E394K 0.47 tolerated(0.89) benign(0.005) TCGA-DS-A1OB-01 17 40174430 40174430 C T NKIRAS2 Silent p.I36I 0.10 TCGA-DS-A1OB-01 17 40635084 40635084 G A ATP6V0A1 Missense_Mutation p.E256K 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-DS-A1OB-01 17 40825658 40825658 C T PLEKHH3 Intron 0.36 TCGA-DS-A1OB-01 17 41341611 41341611 G A NBR1 Missense_Mutation p.E163K 0.15 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 17 41341635 41341635 G A NBR1 Missense_Mutation p.E171K 0.14 tolerated(0.07) possibly_damaging(0.831) TCGA-DS-A1OB-01 17 43317858 43317858 G T FMNL1 Nonsense_Mutation p.E366* 0.22 TCGA-DS-A1OB-01 17 45216125 45216125 T A CDC27 Missense_Mutation p.M568L 0.23 tolerated(1) benign(0.001) TCGA-DS-A1OB-01 17 46865231 46865231 C - TTLL6 Frame_Shift_Del p.D511Tfs*22 0.59 TCGA-DS-A1OB-01 17 48263186 48263186 C T COL1A1 Missense_Mutation p.E1401K 0.33 unknown(0) TCGA-DS-A1OB-01 17 4840954 4840954 G C SLC25A11 3'UTR 0.68 TCGA-DS-A1OB-01 17 66981045 66981045 C T ABCA9 Missense_Mutation p.E1454K 0.38 tolerated(0.45) benign(0.01) TCGA-DS-A1OB-01 17 67190027 67190027 G A ABCA10 Silent p.F483F 0.35 TCGA-DS-A1OB-01 17 7344858 7344858 G A FGF11 Missense_Mutation p.D88N 0.53 tolerated(0.21) probably_damaging(0.983) TCGA-DS-A1OB-01 17 7350366 7350366 G C CHRNB1 Missense_Mutation p.D120H 0.59 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 17 7350414 7350414 G A CHRNB1 Missense_Mutation p.D136N 0.65 tolerated(0.52) benign(0.027) TCGA-DS-A1OB-01 17 76571086 76571086 G A DNAH17 Silent p.I18I 0.37 TCGA-DS-A1OB-01 17 76968123 76968123 G A LGALS3BP Silent p.V431V 0.31 TCGA-DS-A1OB-01 17 78022421 78022421 G A CCDC40 Missense_Mutation p.G239E 0.25 tolerated(0.98) benign(0.003) TCGA-DS-A1OB-01 17 78319818 78319818 G A RNF213 Silent p.L2561L 0.30 TCGA-DS-A1OB-01 17 79682769 79682769 C T SLC25A10 Silent p.V125V 0.43 TCGA-DS-A1OB-01 17 79990299 79990299 G T RAC3 Silent p.T24T 0.33 TCGA-DS-A1OB-01 17 80051484 80051486 GAA - FASN In_Frame_Del p.F148del 0.09 TCGA-DS-A1OB-01 17 80772778 80772778 G A TBCD Missense_Mutation p.R429K 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-DS-A1OB-01 17 80789535 80789536 GC - ZNF750 Frame_Shift_Del p.P266* 0.52 TCGA-DS-A1OB-01 18 12274127 12274127 G A CIDEA Silent p.K122K 0.14 TCGA-DS-A1OB-01 18 21660565 21660565 G A TTC39C Silent p.G159G 0.29 TCGA-DS-A1OB-01 18 28914032 28914032 G C DSG1 Missense_Mutation p.R291T 0.38 deleterious(0.04) benign(0.013) TCGA-DS-A1OB-01 18 29049129 29049129 C T DSG3 Nonsense_Mutation p.Q572* 0.10 TCGA-DS-A1OB-01 18 54603070 54603070 G A WDR7 Silent p.A1255A 0.24 TCGA-DS-A1OB-01 18 55399101 55399101 C T ATP8B1 Intron 0.17 TCGA-DS-A1OB-01 18 9513018 9513018 C T RALBP1 5'UTR 0.14 TCGA-DS-A1OB-01 19 10132473 10132473 C T RDH8 3'UTR 0.32 TCGA-DS-A1OB-01 19 11624833 11624833 G A ECSIT Silent p.S100S 0.38 TCGA-DS-A1OB-01 19 12986774 12986774 T G DNASE2 3'UTR 0.08 TCGA-DS-A1OB-01 19 13423501 13423501 G A CACNA1A Silent p.F550F 0.27 TCGA-DS-A1OB-01 19 14157028 14157028 G C IL27RA Silent p.L277L 0.26 TCGA-DS-A1OB-01 19 14224968 14224968 C G PRKACA Intron 0.45 TCGA-DS-A1OB-01 19 1488085 1488085 C T PCSK4 Missense_Mutation p.E132K 0.41 tolerated(0.69) benign(0.005) TCGA-DS-A1OB-01 19 15374332 15374332 C T BRD4 Missense_Mutation p.D414N 0.29 possibly_damaging(0.822) TCGA-DS-A1OB-01 19 15733966 15733966 G A CYP4F8 RNA 0.25 TCGA-DS-A1OB-01 19 16589972 16589972 G A CALR3 Silent p.F375F 0.28 TCGA-DS-A1OB-01 19 16643429 16643429 G A CHERP Silent p.I218I 0.27 TCGA-DS-A1OB-01 19 16875889 16875889 G A NWD1 Missense_Mutation p.E766K 0.23 tolerated(0.17) benign(0.037) TCGA-DS-A1OB-01 19 17405192 17405192 C T ABHD8 Missense_Mutation p.E352K 0.42 deleterious(0.03) possibly_damaging(0.466) TCGA-DS-A1OB-01 19 18322654 18322654 A G PDE4C Missense_Mutation p.F569S 0.27 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 19 18324253 18324253 G C PDE4C Silent p.L511L 0.40 TCGA-DS-A1OB-01 19 18499253 18499253 C T GDF15 Silent p.L145L 0.39 TCGA-DS-A1OB-01 19 18976372 18976372 C T UPF1 Nonsense_Mutation p.R1008* 0.39 TCGA-DS-A1OB-01 19 21301016 21301016 A G ZNF714 Missense_Mutation p.R516G 0.36 tolerated_low_confidence(0.4) benign(0) TCGA-DS-A1OB-01 19 21909959 21909959 G C ZNF100 Missense_Mutation p.F385L 0.11 tolerated(0.24) benign(0.08) TCGA-DS-A1OB-01 19 21910099 21910099 G C ZNF100 Missense_Mutation p.H339D 0.15 deleterious(0) possibly_damaging(0.859) TCGA-DS-A1OB-01 19 21910450 21910450 G C ZNF100 Missense_Mutation p.Q222E 0.24 tolerated(0.05) benign(0.038) TCGA-DS-A1OB-01 19 21910555 21910555 G A ZNF100 Missense_Mutation p.H187Y 0.19 tolerated(0.24) benign(0.007) TCGA-DS-A1OB-01 19 21910732 21910732 G C ZNF100 Missense_Mutation p.Q128E 0.24 tolerated(0.05) benign(0.338) TCGA-DS-A1OB-01 19 21992068 21992068 G C ZNF43 Silent p.L257L 0.15 TCGA-DS-A1OB-01 19 2210830 2210830 C T DOT1L Nonsense_Mutation p.Q443* 0.47 TCGA-DS-A1OB-01 19 2213964 2213964 C T DOT1L Silent p.L592L 0.57 TCGA-DS-A1OB-01 19 22154722 22154722 G T ZNF208 Missense_Mutation p.F1038L 0.36 deleterious(0.02) probably_damaging(0.959) TCGA-DS-A1OB-01 19 2216583 2216583 C T DOT1L Silent p.L743L 0.40 TCGA-DS-A1OB-01 19 2222052 2222052 C T DOT1L Missense_Mutation p.P962S 0.50 tolerated_low_confidence(0.15) benign(0.004) TCGA-DS-A1OB-01 19 2222191 2222191 C G DOT1L Missense_Mutation p.S1008C 0.35 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-DS-A1OB-01 19 22271309 22271309 A G ZNF257 Missense_Mutation p.R253G 0.17 tolerated(1) benign(0.001) TCGA-DS-A1OB-01 19 22271654 22271654 A G ZNF257 Missense_Mutation p.K368E 0.24 tolerated(0.12) benign(0) TCGA-DS-A1OB-01 19 22847882 22847882 C T ZNF492 Missense_Mutation p.H471Y 0.34 deleterious(0.01) probably_damaging(0.917) TCGA-DS-A1OB-01 19 22939757 22939757 G T ZNF99 3'Flank 0.35 TCGA-DS-A1OB-01 19 23542561 23542561 T C ZNF91 Missense_Mutation p.R1074G 0.17 tolerated(1) benign(0.008) TCGA-DS-A1OB-01 19 2790517 2790517 G T THOP1 Nonsense_Mutation p.E39* 0.42 TCGA-DS-A1OB-01 19 33370092 33370092 C T CEP89 Silent p.L776L 0.42 TCGA-DS-A1OB-01 19 34895659 34895659 C G RP11-618P17.4 Missense_Mutation p.H101D 0.40 deleterious(0.04) probably_damaging(0.997) TCGA-DS-A1OB-01 19 36381515 36381515 T C NFKBID Intron 0.23 TCGA-DS-A1OB-01 19 38976775 38976775 G A RYR1 Missense_Mutation p.R1827H 0.27 probably_damaging(0.994) TCGA-DS-A1OB-01 19 39359707 39359707 T C RINL 3'UTR 0.12 TCGA-DS-A1OB-01 19 39433176 39433183 CCACAGGT ACAGGC FBXO17 3'UTR 0.12 TCGA-DS-A1OB-01 19 40883978 40883978 G A PLD3 Silent p.R457R 0.27 TCGA-DS-A1OB-01 19 40884002 40884002 G A PLD3 Silent p.L465L 0.28 TCGA-DS-A1OB-01 19 41726681 41726681 C A AXL Missense_Mutation p.L76M 0.31 deleterious(0.02) probably_damaging(1) TCGA-DS-A1OB-01 19 41884286 41884286 G A TMEM91 Silent p.Q24Q 0.32 TCGA-DS-A1OB-01 19 41889808 41889808 G A TMEM91 3'UTR 0.38 TCGA-DS-A1OB-01 19 41892596 41892596 G A EXOSC5 Missense_Mutation p.S217L 0.46 deleterious(0.01) benign(0.171) TCGA-DS-A1OB-01 19 42566749 42566749 G A GRIK5 Silent p.F133F 0.23 TCGA-DS-A1OB-01 19 43268359 43268359 C T PSG8 Missense_Mutation p.E47K 0.27 tolerated(0.05) benign(0.063) TCGA-DS-A1OB-01 19 43771966 43771966 C - PSG9 Frame_Shift_Del p.E134Kfs*23 0.31 TCGA-DS-A1OB-01 19 44012175 44012175 C T ETHE1 Silent p.L211L 0.28 TCGA-DS-A1OB-01 19 44099025 44099025 C G IRGQ Missense_Mutation p.D156H 0.36 deleterious_low_confidence(0.02) probably_damaging(0.937) TCGA-DS-A1OB-01 19 44099578 44099578 C T IRGQ Intron 0.36 TCGA-DS-A1OB-01 19 44244329 44244329 C T SMG9 Missense_Mutation p.R248Q 0.10 tolerated(0.51) benign(0.251) TCGA-DS-A1OB-01 19 44680679 44680679 G A ZNF226 Missense_Mutation p.E422K 0.20 tolerated(0.22) benign(0.069) TCGA-DS-A1OB-01 19 45465261 45465261 G C CLPTM1 Missense_Mutation p.E38D 0.11 tolerated(0.16) possibly_damaging(0.636) TCGA-DS-A1OB-01 19 45864831 45864831 C A ERCC2 Silent p.P396P 0.41 TCGA-DS-A1OB-01 19 46094500 46094500 G T GPR4 Silent p.R209R 0.34 TCGA-DS-A1OB-01 19 47646817 47646817 C T SAE1 Silent p.L55L 0.42 TCGA-DS-A1OB-01 19 47987424 47987424 C T KPTN 5'UTR 0.31 TCGA-DS-A1OB-01 19 48342920 48342920 C T CRX Missense_Mutation p.S199F 0.38 deleterious(0.04) possibly_damaging(0.853) TCGA-DS-A1OB-01 19 48660286 48660286 G A LIG1 Missense_Mutation p.P119S 0.28 deleterious_low_confidence(0.04) benign(0.109) TCGA-DS-A1OB-01 19 48660294 48660294 G A LIG1 Missense_Mutation p.S116L 0.28 deleterious(0) benign(0.092) TCGA-DS-A1OB-01 19 48919401 48919401 C T GRIN2D Missense_Mutation p.S575L 0.27 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OB-01 19 49254053 49254053 C T FUT1 Silent p.L162L 0.41 TCGA-DS-A1OB-01 19 49574001 49574001 G A KCNA7 Silent p.V230V 0.32 TCGA-DS-A1OB-01 19 49993279 49993279 C T RPL13A Intron 0.31 TCGA-DS-A1OB-01 19 51581154 51581154 C T KLK14 3'UTR 0.20 TCGA-DS-A1OB-01 19 52447907 52447907 G C ZNF613 Missense_Mutation p.E257D 0.14 tolerated(0.08) benign(0.194) TCGA-DS-A1OB-01 19 52447926 52447926 G A ZNF613 Missense_Mutation p.E264K 0.14 deleterious(0.04) benign(0.26) TCGA-DS-A1OB-01 19 53762164 53762164 G C VN1R2 Missense_Mutation p.S179T 0.08 tolerated(0.84) benign(0.373) TCGA-DS-A1OB-01 19 53762441 53762441 T G VN1R2 Silent p.V271V 0.08 TCGA-DS-A1OB-01 19 54080340 54080340 C T ZNF331 Nonsense_Mutation p.Q176* 0.36 TCGA-DS-A1OB-01 19 54659071 54659071 G A CNOT3 Missense_Mutation p.E730K 0.31 deleterious(0) possibly_damaging(0.635) TCGA-DS-A1OB-01 19 55324695 55324695 G A KIR2DL4 Intron 0.14 TCGA-DS-A1OB-01 19 56539376 56539376 G A NLRP5 Missense_Mutation p.A593T 0.26 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 19 56733189 56733189 C T ZSCAN5A Missense_Mutation p.V416I 0.09 tolerated(0.88) benign(0.009) TCGA-DS-A1OB-01 19 56733238 56733238 G C ZSCAN5A Silent p.L399L 0.06 TCGA-DS-A1OB-01 19 56896421 56896421 C G ZNF582 Missense_Mutation p.W122S 0.32 tolerated(0.24) possibly_damaging(0.694) TCGA-DS-A1OB-01 19 57088508 57088508 C T ZNF470 Silent p.F237F 0.32 TCGA-DS-A1OB-01 19 58083449 58083449 C T ZNF416 3'UTR 0.09 TCGA-DS-A1OB-01 19 58231876 58231876 C T ZNF671 Silent p.Q526Q 0.42 TCGA-DS-A1OB-01 19 58967624 58967624 C G ZNF324B Missense_Mutation p.S438C 0.43 deleterious(0) probably_damaging(0.995) TCGA-DS-A1OB-01 19 59028546 59028546 G A ZBTB45 Silent p.P165P 0.11 TCGA-DS-A1OB-01 19 6185553 6185553 G T ACSBG2 Nonsense_Mutation p.E477* 0.29 TCGA-DS-A1OB-01 19 6664832 6664832 A T TNFSF14 3'UTR 0.14 TCGA-DS-A1OB-01 19 7911502 7911502 C T EVI5L Missense_Mutation p.S25F 0.26 deleterious(0) possibly_damaging(0.774) TCGA-DS-A1OB-01 19 7999088 7999088 C T TIMM44 Silent p.R143R 0.30 TCGA-DS-A1OB-01 19 9204184 9204184 G A OR1M1 Silent p.G88G 0.10 TCGA-DS-A1OB-01 19 9204711 9204711 C G OR1M1 Missense_Mutation p.S264W 0.42 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OB-01 19 9362087 9362087 T C OR7E24 Missense_Mutation p.V123A 0.13 tolerated(0.24) benign(0.005) TCGA-DS-A1OB-01 19 9362089 9362089 C G OR7E24 Missense_Mutation p.L124V 0.12 tolerated(0.05) benign(0.066) TCGA-DS-A1OB-01 19 9362458 9362458 C T OR7E24 Missense_Mutation p.P247S 0.08 tolerated(0.55) benign(0.173) TCGA-DS-A1OB-01 19 9362461 9362461 A T OR7E24 Missense_Mutation p.T248S 0.14 tolerated(1) benign(0.001) TCGA-DS-A1OB-01 1 100181208 100181208 G A FRRS1 Silent p.F419F 0.29 TCGA-DS-A1OB-01 1 110134700 110134700 C G GNAI3 Missense_Mutation p.Q304E 0.39 tolerated(0.22) benign(0.144) TCGA-DS-A1OB-01 1 110882224 110882224 C - RBM15 Frame_Shift_Del p.R67Afs*8 0.38 TCGA-DS-A1OB-01 1 11188155 11188155 G C MTOR Missense_Mutation p.S1980C 0.31 deleterious(0.03) probably_damaging(0.926) TCGA-DS-A1OB-01 1 112281908 112281908 G A FAM212B 5'UTR 0.44 TCGA-DS-A1OB-01 1 11249931 11249931 G A ANGPTL7 Missense_Mutation p.E99K 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-DS-A1OB-01 1 117303061 117303061 C G CD2 Missense_Mutation p.I140M 0.23 tolerated(0.11) possibly_damaging(0.512) TCGA-DS-A1OB-01 1 1190830 1190830 C T UBE2J2 Missense_Mutation p.S194N 0.31 tolerated(0.3) benign(0.001) TCGA-DS-A1OB-01 1 12004643 12004643 C A PLOD1 Intron 0.32 TCGA-DS-A1OB-01 1 12004649 12004649 C A PLOD1 Intron 0.37 TCGA-DS-A1OB-01 1 142713914 142713914 T C RP11-417J8.6 RNA 0.18 TCGA-DS-A1OB-01 1 145359100 145359100 C G NBPF10 Missense_Mutation p.L3014V 0.10 possibly_damaging(0.745) TCGA-DS-A1OB-01 1 146751744 146751744 G A CHD1L Missense_Mutation p.E529K 0.25 deleterious(0.03) benign(0.009) TCGA-DS-A1OB-01 1 149858563 149858563 C T HIST2H2AC Silent p.A13A 0.13 TCGA-DS-A1OB-01 1 149858794 149858794 C T HIST2H2AC Silent p.N90N 0.10 TCGA-DS-A1OB-01 1 149859383 149859383 C T HIST2H2AB Silent p.V28V 0.10 TCGA-DS-A1OB-01 1 149859398 149859398 A G HIST2H2AB Silent p.G23G 0.10 TCGA-DS-A1OB-01 1 149859428 149859428 A G HIST2H2AB Silent p.A13A 0.10 TCGA-DS-A1OB-01 1 150469344 150469344 G A TARS2 Missense_Mutation p.R327Q 0.28 deleterious(0.01) probably_damaging(0.95) TCGA-DS-A1OB-01 1 152770351 152770351 T A LCE1D Silent p.P27P 0.35 TCGA-DS-A1OB-01 1 152770354 152770354 A G LCE1D Silent p.K28K 0.37 TCGA-DS-A1OB-01 1 152777591 152777591 G A LCE1C 3'UTR 0.07 TCGA-DS-A1OB-01 1 152777599 152777599 C T LCE1C Silent p.%3D 0.05 TCGA-DS-A1OB-01 1 152785033 152785033 T C LCE1B Silent p.C37C 0.07 TCGA-DS-A1OB-01 1 152785039 152785039 A T LCE1B Silent p.P39P 0.06 TCGA-DS-A1OB-01 1 152785120 152785120 T A LCE1B Silent p.G66G 0.09 TCGA-DS-A1OB-01 1 153005032 153005032 G A SPRR1B Missense_Mutation p.E71K 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-DS-A1OB-01 1 153656268 153656268 C T NPR1 Silent p.L484L 0.43 TCGA-DS-A1OB-01 1 155160794 155160794 G C MUC1 Missense_Mutation p.L245V 0.15 tolerated(0.57) benign(0.026) TCGA-DS-A1OB-01 1 15541704 15541704 G A TMEM51 Missense_Mutation p.E41K 0.42 tolerated(0.45) benign(0.115) TCGA-DS-A1OB-01 1 155717580 155717580 G A GON4L 3'Flank 0.39 TCGA-DS-A1OB-01 1 156202177 156202177 C G PMF1 Missense_Mutation p.I76M 0.34 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-DS-A1OB-01 1 157551401 157551401 G A FCRL4 Missense_Mutation p.A390V 0.43 tolerated(0.13) possibly_damaging(0.793) TCGA-DS-A1OB-01 1 159033349 159033349 C T AIM2 Missense_Mutation p.R311Q 0.11 tolerated(0.11) benign(0.266) TCGA-DS-A1OB-01 1 160011915 160011915 G A KCNJ10 Silent p.I136I 0.25 TCGA-DS-A1OB-01 1 160129271 160129271 C T ATP1A4 Silent p.L245L 0.39 TCGA-DS-A1OB-01 1 160276992 160276992 G A COPA Silent p.V421V 0.32 TCGA-DS-A1OB-01 1 16111155 16111155 G C FBLIM1 Nonstop_Mutation p.*277Sext*33 0.47 TCGA-DS-A1OB-01 1 16525146 16525146 C T ARHGEF19 Missense_Mutation p.R782Q 0.26 tolerated(0.21) probably_damaging(0.999) TCGA-DS-A1OB-01 1 166896312 166896312 C G ILDR2 Missense_Mutation p.R329T 0.11 deleterious(0.05) probably_damaging(0.997) TCGA-DS-A1OB-01 1 166927147 166927147 G C ILDR2 Missense_Mutation p.L80V 0.16 tolerated(0.26) benign(0.026) TCGA-DS-A1OB-01 1 167095055 167095055 C T DUSP27 Silent p.I229I 0.16 TCGA-DS-A1OB-01 1 178427627 178427627 G C RASAL2 Missense_Mutation p.R1067T 0.36 tolerated(0.11) benign(0.217) TCGA-DS-A1OB-01 1 179033509 179033509 C G FAM20B Silent p.L272L 0.39 TCGA-DS-A1OB-01 1 180842936 180842936 C G XPR1 Intron 0.33 TCGA-DS-A1OB-01 1 181018268 181018268 G A MR1 Missense_Mutation p.V50M 0.31 deleterious(0.01) possibly_damaging(0.672) TCGA-DS-A1OB-01 1 183497152 183497152 C T SMG7 Silent p.V182V 0.33 TCGA-DS-A1OB-01 1 184672062 184672062 C T EDEM3 Missense_Mutation p.D758N 0.33 tolerated(0.2) benign(0.137) TCGA-DS-A1OB-01 1 1959068 1959068 G A GABRD Missense_Mutation p.E175K 0.29 tolerated(0.12) possibly_damaging(0.593) TCGA-DS-A1OB-01 1 196448364 196448364 G A KCNT2 Missense_Mutation p.S110L 0.35 tolerated(0.56) benign(0) TCGA-DS-A1OB-01 1 201751637 201751637 C T NAV1 Missense_Mutation p.S666F 0.14 deleterious(0) benign(0.373) TCGA-DS-A1OB-01 1 205238159 205238159 G A TMCC2 Missense_Mutation p.D277N 0.31 deleterious(0.02) benign(0.13) TCGA-DS-A1OB-01 1 205275373 205275373 C T NUAK2 Silent p.G211G 0.34 TCGA-DS-A1OB-01 1 21031260 21031260 G A KIF17 Missense_Mutation p.S268L 0.41 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OB-01 1 2125322 2125322 C T C1orf86 Missense_Mutation p.E76K 0.20 deleterious(0.01) possibly_damaging(0.801) TCGA-DS-A1OB-01 1 212799411 212799411 C T FAM71A Missense_Mutation p.R398W 0.27 deleterious(0) benign(0.332) TCGA-DS-A1OB-01 1 216373253 216373253 G A USH2A Missense_Mutation p.S1176F 0.25 possibly_damaging(0.588) TCGA-DS-A1OB-01 1 217793291 217793291 C T GPATCH2 Missense_Mutation p.E203K 0.21 tolerated(0.1) possibly_damaging(0.468) TCGA-DS-A1OB-01 1 220232059 220232059 T C BPNT1 3'UTR 0.12 TCGA-DS-A1OB-01 1 22150806 22150806 C G HSPG2 Missense_Mutation p.V4270L 0.27 possibly_damaging(0.857) TCGA-DS-A1OB-01 1 22150899 22150899 C T LDLRAD2 3'UTR 0.24 TCGA-DS-A1OB-01 1 22150991 22150991 C G LDLRAD2 3'UTR 0.31 TCGA-DS-A1OB-01 1 224585826 224585826 C T WDR26 Missense_Mutation p.E583K 0.42 deleterious(0.01) possibly_damaging(0.908) TCGA-DS-A1OB-01 1 226252060 226252060 G C H3F3A Missense_Mutation p.R3P 0.12 deleterious_low_confidence(0.03) benign(0) TCGA-DS-A1OB-01 1 228505838 228505838 C G OBSCN Missense_Mutation p.Q5656E 0.28 benign(0.065) TCGA-DS-A1OB-01 1 228646076 228646076 A G HIST3H2BB Silent p.A82A 0.12 TCGA-DS-A1OB-01 1 228646178 228646178 C T HIST3H2BB Silent p.T116T 0.05 TCGA-DS-A1OB-01 1 229653900 229653900 C T ABCB10 3'UTR 0.15 TCGA-DS-A1OB-01 1 230398249 230398249 G C GALNT2 Intron 0.55 TCGA-DS-A1OB-01 1 235345725 235345725 C T ARID4B Missense_Mutation p.G837R 0.31 tolerated_low_confidence(0.07) possibly_damaging(0.612) TCGA-DS-A1OB-01 1 24078381 24078381 C T TCEB3 Missense_Mutation p.T455M 0.43 tolerated(0.08) benign(0.054) TCGA-DS-A1OB-01 1 246493823 246493823 G A SMYD3 Missense_Mutation p.S118L 0.27 tolerated(0.08) benign(0.221) TCGA-DS-A1OB-01 1 246784745 246784745 G C CNST Missense_Mutation p.D132H 0.21 deleterious(0.03) probably_damaging(0.927) TCGA-DS-A1OB-01 1 2493113 2493114 - GCA TNFRSF14 In_Frame_Ins p.S186dup 0.33 TCGA-DS-A1OB-01 1 27094341 27094341 G A ARID1A Missense_Mutation p.E1017K 0.35 unknown(0) TCGA-DS-A1OB-01 1 27094355 27094355 G A ARID1A Silent p.K1021K 0.31 TCGA-DS-A1OB-01 1 27674346 27674346 G C SYTL1 Missense_Mutation p.E130Q 0.13 tolerated(0.18) benign(0.04) TCGA-DS-A1OB-01 1 27681794 27681794 C T MAP3K6 3'UTR 0.19 TCGA-DS-A1OB-01 1 27682182 27682182 C T MAP3K6 Missense_Mutation p.D1256N 0.33 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OB-01 1 27691153 27691153 G T MAP3K6 Nonsense_Mutation p.S168* 0.29 TCGA-DS-A1OB-01 1 33149453 33149453 T C RBBP4 3'UTR 0.14 TCGA-DS-A1OB-01 1 3697514 3697515 - G LRRC47 3'UTR 0.23 TCGA-DS-A1OB-01 1 38272627 38272627 C T YRDC Missense_Mutation p.D176N 0.37 tolerated(0.3) benign(0.007) TCGA-DS-A1OB-01 1 38345815 38345815 C T INPP5B Missense_Mutation p.E495K 0.44 deleterious(0.02) benign(0.038) TCGA-DS-A1OB-01 1 39466751 39466751 G A AKIRIN1 Missense_Mutation p.E157K 0.40 deleterious(0.01) probably_damaging(0.98) TCGA-DS-A1OB-01 1 40253873 40253873 C T BMP8B Silent p.A95A 0.58 TCGA-DS-A1OB-01 1 40713717 40713717 C T TMCO2 Missense_Mutation p.L18F 0.31 tolerated_low_confidence(0.11) unknown(0) TCGA-DS-A1OB-01 1 41486212 41486212 C T SLFNL1 Missense_Mutation p.E41K 0.37 tolerated_low_confidence(0.72) benign(0.006) TCGA-DS-A1OB-01 1 43913946 43913946 G A SZT2 Missense_Mutation p.E3197K 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-DS-A1OB-01 1 44057560 44057560 C A PTPRF Missense_Mutation p.Q537K 0.45 tolerated(0.36) possibly_damaging(0.808) TCGA-DS-A1OB-01 1 44058238 44058238 C T PTPRF Silent p.F593F 0.26 TCGA-DS-A1OB-01 1 45232516 45232516 G C KIF2C Missense_Mutation p.E664Q 0.47 tolerated(0.18) benign(0.224) TCGA-DS-A1OB-01 1 46032262 46032262 G A AKR1A1 Missense_Mutation p.A36T 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-DS-A1OB-01 1 46034337 46034337 C G AKR1A1 Missense_Mutation p.P245A 0.17 tolerated(0.2) benign(0.062) TCGA-DS-A1OB-01 1 47582342 47582342 C T CYP4Z1 Silent p.F429F 0.11 TCGA-DS-A1OB-01 1 47904154 47904154 C T FOXD2 Missense_Mutation p.S116L 0.33 deleterious_low_confidence(0.05) benign(0.073) TCGA-DS-A1OB-01 1 49224849 49224849 C T BEND5 Silent p.P156P 0.32 TCGA-DS-A1OB-01 1 52498898 52498898 G C KTI12 Missense_Mutation p.S179C 0.29 tolerated(0.22) benign(0.015) TCGA-DS-A1OB-01 1 59041965 59041965 G A TACSTD2 Silent p.L288L 0.29 TCGA-DS-A1OB-01 1 6535555 6535555 G C PLEKHG5 Silent p.L138L 0.37 TCGA-DS-A1OB-01 1 906229 906229 A G PLEKHN1 Intron 0.10 TCGA-DS-A1OB-01 1 94054704 94054704 G A BCAR3 Silent p.I253I 0.30 TCGA-DS-A1OB-01 20 17950603 17950603 C T MGME1 Missense_Mutation p.S34L 0.52 tolerated(0.85) benign(0.001) TCGA-DS-A1OB-01 20 23066284 23066284 G A CD93 Silent p.F182F 0.10 TCGA-DS-A1OB-01 20 25062078 25062078 C T VSX1 Intron 0.28 TCGA-DS-A1OB-01 20 25319864 25319864 G A ABHD12 Silent p.F105F 0.25 TCGA-DS-A1OB-01 20 33722642 33722642 C A EDEM2 Nonsense_Mutation p.E201* 0.37 TCGA-DS-A1OB-01 20 33891873 33891873 C G UQCC1 Splice_Site p.X256_splice 0.25 TCGA-DS-A1OB-01 20 34090617 34090617 C T CEP250 Silent p.L1474L 0.18 TCGA-DS-A1OB-01 20 39725963 39725963 C G TOP1 Missense_Mutation p.F278L 0.51 deleterious(0.04) possibly_damaging(0.719) TCGA-DS-A1OB-01 20 43564053 43564053 C T PABPC1L Missense_Mutation p.T489I 0.36 tolerated(0.23) benign(0.001) TCGA-DS-A1OB-01 20 44238785 44238785 G A WFDC9 Silent p.I12I 0.36 TCGA-DS-A1OB-01 20 44439539 44439539 G A DNTTIP1 Missense_Mutation p.E271K 0.38 tolerated(0.27) possibly_damaging(0.454) TCGA-DS-A1OB-01 20 44671954 44671954 C T SLC12A5 Missense_Mutation p.S433L 0.14 deleterious(0.01) possibly_damaging(0.521) TCGA-DS-A1OB-01 20 44845597 44845597 C T CDH22 Missense_Mutation p.E236K 0.31 deleterious(0) possibly_damaging(0.672) TCGA-DS-A1OB-01 20 45188633 45188633 C T SLC13A3 3'UTR 0.38 TCGA-DS-A1OB-01 20 48467319 48467319 C G SLC9A8 Silent p.V185V 0.21 TCGA-DS-A1OB-01 20 49509391 49509391 C T ADNP Silent p.G620G 0.12 TCGA-DS-A1OB-01 20 49576120 49576120 C G MOCS3 Silent p.V247V 0.11 TCGA-DS-A1OB-01 20 49576214 49576214 G A MOCS3 Missense_Mutation p.D279N 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-DS-A1OB-01 20 49620577 49620577 C T KCNG1 Silent p.%3D 0.13 TCGA-DS-A1OB-01 20 62298876 62298876 C A RTEL1 Missense_Mutation p.F247L 0.54 deleterious(0) probably_damaging(0.95) TCGA-DS-A1OB-01 20 62708220 62708220 G A RGS19 Missense_Mutation p.A7V 0.16 tolerated_low_confidence(0.1) benign(0.037) TCGA-DS-A1OB-01 20 62708228 62708228 C T RGS19 Silent p.P4P 0.15 TCGA-DS-A1OB-01 20 62708247 62708247 C T RGS19 5'UTR 0.18 TCGA-DS-A1OB-01 21 31798115 31798115 T G KRTAP13-3 Missense_Mutation p.D39A 0.15 tolerated(0.07) benign(0.329) TCGA-DS-A1OB-01 21 31798143 31798157 AGGAAGAGCCACAGG - KRTAP13-3 In_Frame_Del p.S25_S29del 0.08 TCGA-DS-A1OB-01 21 31798176 31798176 A G KRTAP13-3 Silent p.L19L 0.05 TCGA-DS-A1OB-01 21 31802676 31802676 G A KRTAP13-4 Missense_Mutation p.S28N 0.09 tolerated(1) benign(0) TCGA-DS-A1OB-01 21 31802781 31802781 A C KRTAP13-4 Missense_Mutation p.K63T 0.41 tolerated(1) benign(0.002) TCGA-DS-A1OB-01 21 31964863 31964863 T C KRTAP6-3 Silent p.G26G 0.11 TCGA-DS-A1OB-01 21 36259192 36259192 G A RUNX1 Missense_Mutation p.S100F 0.41 deleterious(0) possibly_damaging(0.772) TCGA-DS-A1OB-01 21 42748911 42748911 G A MX2 Missense_Mutation p.M26I 0.28 tolerated_low_confidence(0.11) benign(0.005) TCGA-DS-A1OB-01 21 45999711 45999711 C G KRTAP10-5 Missense_Mutation p.A249P 0.08 tolerated(1) benign(0.048) TCGA-DS-A1OB-01 21 45999712 45999712 C T KRTAP10-5 Silent p.Q248Q 0.08 TCGA-DS-A1OB-01 21 46000034 46000034 C G KRTAP10-5 Missense_Mutation p.C141S 0.16 deleterious(0.04) unknown(0) TCGA-DS-A1OB-01 21 46012355 46012355 G C KRTAP10-6 Missense_Mutation p.S4C 0.07 deleterious(0) unknown(0) TCGA-DS-A1OB-01 21 46020514 46020514 T - KRTAP10-7 5'UTR 0.37 TCGA-DS-A1OB-01 21 46021489 46021489 G A KRTAP10-7 Missense_Mutation p.R323K 0.11 tolerated(0.26) unknown(0) TCGA-DS-A1OB-01 21 46021491 46021491 C T KRTAP10-7 Missense_Mutation p.P324S 0.11 tolerated(0.12) unknown(0) TCGA-DS-A1OB-01 22 17468940 17468940 G A GAB4 Missense_Mutation p.S199F 0.16 deleterious(0) possibly_damaging(0.831) TCGA-DS-A1OB-01 22 17583169 17583169 G A IL17RA Missense_Mutation p.E247K 0.60 tolerated(0.6) benign(0.007) TCGA-DS-A1OB-01 22 18975281 18975281 G A DGCR5 RNA 0.25 TCGA-DS-A1OB-01 22 19384465 19384465 G C HIRA Missense_Mutation p.L167V 0.18 tolerated(1) benign(0.04) TCGA-DS-A1OB-01 22 20103660 20103660 C G TRMT2A Missense_Mutation p.R167P 0.07 tolerated(0.09) benign(0.008) TCGA-DS-A1OB-01 22 29924130 29924130 C T THOC5 Missense_Mutation p.D335N 0.14 tolerated(0.08) probably_damaging(0.948) TCGA-DS-A1OB-01 22 32044167 32044167 G A PISD Missense_Mutation p.R81W 0.60 tolerated(0.14) benign(0.024) TCGA-DS-A1OB-01 22 38245372 38245372 G C EIF3L 5'UTR 0.15 TCGA-DS-A1OB-01 22 38245376 38245376 G A EIF3L 5'UTR 0.13 TCGA-DS-A1OB-01 22 38352859 38352859 C T POLR2F Intron 0.14 TCGA-DS-A1OB-01 22 38823854 38823854 G A KCNJ4 Missense_Mutation p.A95V 0.53 tolerated(0.4) benign(0.028) TCGA-DS-A1OB-01 22 39134709 39134709 G A SUN2 Silent p.F631F 0.10 TCGA-DS-A1OB-01 22 39918472 39918472 T C ATF4 Silent p.T307T 0.24 TCGA-DS-A1OB-01 22 39918473 39918473 G T ATF4 Missense_Mutation p.G308C 0.24 deleterious(0) probably_damaging(0.996) TCGA-DS-A1OB-01 22 42976296 42976296 T C POLDIP3 3'Flank 0.20 TCGA-DS-A1OB-01 22 46685734 46685734 C T TTC38 Silent p.F418F 0.49 TCGA-DS-A1OB-01 22 50488628 50488628 C T TTLL8 Missense_Mutation p.A70T 0.28 tolerated(0.6) benign(0.011) TCGA-DS-A1OB-01 22 50988059 50988059 C T KLHDC7B Silent p.I488I 0.51 TCGA-DS-A1OB-01 2 100199270 100199270 C T AFF3 Missense_Mutation p.G953E 0.28 tolerated(0.1) benign(0.026) TCGA-DS-A1OB-01 2 101924894 101924894 G C RNF149 Missense_Mutation p.L53V 0.38 tolerated(0.56) benign(0.015) TCGA-DS-A1OB-01 2 11053707 11053707 C T KCNF1 Silent p.L385L 0.28 TCGA-DS-A1OB-01 2 118583114 118583114 G A DDX18 Missense_Mutation p.R487K 0.38 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 2 120383254 120383254 G A PCDP1 Silent p.S502S 0.47 TCGA-DS-A1OB-01 2 129025806 129025806 C T HS6ST1 Missense_Mutation p.R389Q 0.15 tolerated_low_confidence(0.22) benign(0.011) TCGA-DS-A1OB-01 2 133539618 133539618 C T NCKAP5 Missense_Mutation p.R1589K 0.31 tolerated(1) benign(0) TCGA-DS-A1OB-01 2 135012095 135012095 G A MGAT5 Missense_Mutation p.E41K 0.29 deleterious(0.01) possibly_damaging(0.879) TCGA-DS-A1OB-01 2 135206407 135206407 G C MGAT5 Missense_Mutation p.D739H 0.30 tolerated(0.07) probably_damaging(0.946) TCGA-DS-A1OB-01 2 165552125 165552125 G A COBLL1 Nonsense_Mutation p.Q631* 0.25 TCGA-DS-A1OB-01 2 173853514 173853514 G C RAPGEF4 Missense_Mutation p.D441H 0.35 deleterious(0.02) probably_damaging(1) TCGA-DS-A1OB-01 2 179412795 179412795 C T TTN Silent p.V31186V 0.31 TCGA-DS-A1OB-01 2 179495914 179495914 C T TTN Missense_Mutation p.D14621N 0.14 TCGA-DS-A1OB-01 2 179701775 179701775 C T CCDC141 Missense_Mutation p.E1391K 0.19 deleterious(0.02) possibly_damaging(0.897) TCGA-DS-A1OB-01 2 190728473 190728473 G A PMS1 Missense_Mutation p.E621K 0.34 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 2 203846883 203846883 G A CARF Missense_Mutation p.G593E 0.22 tolerated_low_confidence(0.64) benign(0.016) TCGA-DS-A1OB-01 2 203847071 203847071 G T CARF Missense_Mutation p.D656Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-DS-A1OB-01 2 206364656 206364656 G A PARD3B Silent p.Q965Q 0.29 TCGA-DS-A1OB-01 2 206988947 206988947 C G NDUFS1 Missense_Mutation p.E730Q 0.32 tolerated(0.27) benign(0.015) TCGA-DS-A1OB-01 2 209200831 209200831 C G PIKFYVE Missense_Mutation p.S1476C 0.41 deleterious(0.01) benign(0.001) TCGA-DS-A1OB-01 2 219232504 219232504 C T C2orf62 Silent p.L327L 0.26 TCGA-DS-A1OB-01 2 220083054 220083054 C T ABCB6 Silent p.E114E 0.38 TCGA-DS-A1OB-01 2 220355221 220355221 G C SPEG Missense_Mutation p.K3004N 0.35 probably_damaging(0.993) TCGA-DS-A1OB-01 2 220427273 220427273 C G OBSL1 Missense_Mutation p.G935A 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-DS-A1OB-01 2 226378184 226378184 C A NYAP2 Missense_Mutation p.P107T 0.46 tolerated(0.21) benign(0.036) TCGA-DS-A1OB-01 2 227872234 227872234 C G COL4A4 Missense_Mutation p.R1627T 0.14 unknown(0) TCGA-DS-A1OB-01 2 231134604 231134604 C T SP140 Silent p.F460F 0.35 TCGA-DS-A1OB-01 2 232576094 232576094 G A PTMA Missense_Mutation p.E28K 0.19 tolerated(0.06) unknown(0) TCGA-DS-A1OB-01 2 232576597 232576597 G T PTMA Nonsense_Mutation p.E40* 0.18 TCGA-DS-A1OB-01 2 237247022 237247022 C T IQCA1 Missense_Mutation p.E654K 0.28 deleterious(0) benign(0.026) TCGA-DS-A1OB-01 2 238280433 238280433 C T COL6A3 Silent p.T1409T 0.22 TCGA-DS-A1OB-01 2 242062183 242062183 G A PASK Silent p.F1012F 0.08 TCGA-DS-A1OB-01 2 242178086 242178086 G C HDLBP Missense_Mutation p.F909L 0.27 deleterious(0.04) possibly_damaging(0.874) TCGA-DS-A1OB-01 2 242178104 242178104 G A HDLBP Silent p.F903F 0.28 TCGA-DS-A1OB-01 2 242178149 242178149 G A HDLBP Silent p.V888V 0.27 TCGA-DS-A1OB-01 2 242178153 242178153 G A HDLBP Missense_Mutation p.S887F 0.28 tolerated(0.18) benign(0.016) TCGA-DS-A1OB-01 2 242757425 242757425 C T NEU4 Missense_Mutation p.S182L 0.41 deleterious(0) probably_damaging(0.994) TCGA-DS-A1OB-01 2 24494755 24494755 C T ITSN2 Missense_Mutation p.E713K 0.42 tolerated(0.12) unknown(0) TCGA-DS-A1OB-01 2 25044493 25044493 C G ADCY3 Missense_Mutation p.R1007T 0.25 tolerated(0.51) benign(0) TCGA-DS-A1OB-01 2 25973041 25973041 C T ASXL2 Missense_Mutation p.E462K 0.10 tolerated(0.13) benign(0.157) TCGA-DS-A1OB-01 2 27464811 27464811 G A CAD Silent p.V1972V 0.38 TCGA-DS-A1OB-01 2 27535113 27535113 T C MPV17 Missense_Mutation p.D126G 0.31 tolerated(0.12) possibly_damaging(0.883) TCGA-DS-A1OB-01 2 28802553 28802553 C T PLB1 Silent p.L515L 0.34 TCGA-DS-A1OB-01 2 29358502 29358502 C T CLIP4 Silent p.L206L 0.30 TCGA-DS-A1OB-01 2 29917783 29917783 G A ALK Silent p.S295S 0.28 TCGA-DS-A1OB-01 2 49195834 49195834 C T FSHR Intron 0.36 TCGA-DS-A1OB-01 2 55481864 55481864 C T MTIF2 Silent p.T143T 0.37 TCGA-DS-A1OB-01 2 63666965 63666965 G A WDPCP Missense_Mutation p.S142F 0.31 deleterious(0) probably_damaging(0.983) TCGA-DS-A1OB-01 2 70188532 70188532 G A ASPRV1 Missense_Mutation p.R97W 0.41 deleterious(0) possibly_damaging(0.72) TCGA-DS-A1OB-01 2 84668415 84668415 C T SUCLG1 Missense_Mutation p.E163K 0.37 tolerated(0.09) benign(0.002) TCGA-DS-A1OB-01 2 86712946 86712946 C T KDM3A Missense_Mutation p.R1093W 0.31 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 2 89513204 89513204 C G IGKV1-27 Splice_Site p.X19_splice 0.26 TCGA-DS-A1OB-01 2 95775775 95775775 C T MRPS5 Missense_Mutation p.E97K 0.34 deleterious(0.04) possibly_damaging(0.611) TCGA-DS-A1OB-01 2 99858936 99858936 G C LYG2 Nonsense_Mutation p.S177* 0.38 TCGA-DS-A1OB-01 3 10018708 10018708 G A EMC3 Silent p.F80F 0.68 TCGA-DS-A1OB-01 3 111671504 111671504 C T PHLDB2 Missense_Mutation p.S906F 0.73 deleterious(0) benign(0.139) TCGA-DS-A1OB-01 3 114057790 114057791 - TTTG ZBTB20 3'UTR 0.14 TCGA-DS-A1OB-01 3 121416258 121416258 C G GOLGB1 Missense_Mutation p.E1038Q 0.27 benign(0.168) TCGA-DS-A1OB-01 3 125637766 125637766 G A FAM86JP RNA 0.18 TCGA-DS-A1OB-01 3 133485165 133485165 C T TF Silent p.L458L 0.74 TCGA-DS-A1OB-01 3 138665360 138665360 C T FOXL2 Missense_Mutation p.E69K 0.15 deleterious(0.02) possibly_damaging(0.573) TCGA-DS-A1OB-01 3 160141381 160141381 C G SMC4 Missense_Mutation p.Q730E 0.12 tolerated(0.31) benign(0.01) TCGA-DS-A1OB-01 3 169993067 169993067 G C PRKCI Missense_Mutation p.E233Q 0.65 tolerated(0.1) benign(0.028) TCGA-DS-A1OB-01 3 172224636 172224636 C G TNFSF10 Silent p.L164L 0.74 TCGA-DS-A1OB-01 3 178927486 178927486 G C PIK3CA Missense_Mutation p.E417Q 0.73 tolerated(0.18) benign(0.331) TCGA-DS-A1OB-01 3 178928079 178928079 G C PIK3CA Missense_Mutation p.E453Q 0.86 tolerated(0.07) probably_damaging(0.928) TCGA-DS-A1OB-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.68 deleterious(0.02) probably_damaging(0.959) TCGA-DS-A1OB-01 3 195390998 195390998 G T SDHAP2 RNA 0.26 TCGA-DS-A1OB-01 3 196612846 196612846 G A SENP5 Missense_Mutation p.R265Q 0.67 tolerated(0.21) benign(0.012) TCGA-DS-A1OB-01 3 38053136 38053136 C T PLCD1 Missense_Mutation p.D174N 0.35 deleterious(0) probably_damaging(0.972) TCGA-DS-A1OB-01 3 38739770 38739770 G A SCN10A Silent p.F1647F 0.29 TCGA-DS-A1OB-01 3 47619392 47619392 C T CSPG5 Missense_Mutation p.A42T 1.00 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DS-A1OB-01 3 48561206 48561206 C G PFKFB4 Missense_Mutation p.E384Q 0.75 possibly_damaging(0.88) TCGA-DS-A1OB-01 3 48669431 48669431 G C SLC26A6 Nonsense_Mutation p.S211* 0.26 TCGA-DS-A1OB-01 3 49166246 49166246 C T LAMB2 Missense_Mutation p.D580N 0.71 tolerated(0.47) benign(0.002) TCGA-DS-A1OB-01 3 49166527 49166527 C A LAMB2 Nonsense_Mutation p.E553* 0.72 TCGA-DS-A1OB-01 3 49168252 49168252 G C LAMB2 Silent p.L319L 0.70 TCGA-DS-A1OB-01 3 49397721 49397721 C G RHOA Missense_Mutation p.R168T 0.70 deleterious(0.02) possibly_damaging(0.809) TCGA-DS-A1OB-01 3 53919919 53919919 C T SELK Missense_Mutation p.R72Q 0.70 deleterious(0.05) benign(0.008) TCGA-DS-A1OB-01 3 9419525 9419525 G A THUMPD3 Missense_Mutation p.D321N 0.11 deleterious(0) probably_damaging(0.995) TCGA-DS-A1OB-01 4 100822242 100822242 C G DNAJB14 Missense_Mutation p.L361F 0.22 deleterious(0.01) possibly_damaging(0.544) TCGA-DS-A1OB-01 4 110610310 110610310 C T CASP6 3'UTR 0.59 TCGA-DS-A1OB-01 4 110834476 110834476 C G EGF 5'UTR 0.33 TCGA-DS-A1OB-01 4 121966842 121966842 C T NDNF Missense_Mutation p.E51K 0.38 deleterious(0) probably_damaging(0.97) TCGA-DS-A1OB-01 4 134071903 134071903 C G PCDH10 Missense_Mutation p.A203G 0.34 deleterious(0) probably_damaging(0.996) TCGA-DS-A1OB-01 4 145916549 145916549 G A ANAPC10 Silent p.F178F 0.38 TCGA-DS-A1OB-01 4 152201036 152201036 T G PRSS48 Missense_Mutation p.F47L 0.11 tolerated(0.77) benign(0.002) TCGA-DS-A1OB-01 4 152201038 152201038 A G PRSS48 Missense_Mutation p.D48G 0.12 tolerated(1) benign(0) TCGA-DS-A1OB-01 4 153896404 153896404 G A FHDC1 Missense_Mutation p.S654N 0.30 tolerated(0.15) benign(0.003) TCGA-DS-A1OB-01 4 153897303 153897303 G C FHDC1 Missense_Mutation p.E954Q 0.23 deleterious(0.04) probably_damaging(0.965) TCGA-DS-A1OB-01 4 158059992 158059992 C T GLRB Silent p.I214I 0.30 TCGA-DS-A1OB-01 4 159627900 159627900 G A ETFDH Missense_Mutation p.E530K 0.33 deleterious(0.01) possibly_damaging(0.646) TCGA-DS-A1OB-01 4 183664565 183664565 G A TENM3 Missense_Mutation p.E1208K 0.42 tolerated(0.21) benign(0) TCGA-DS-A1OB-01 4 184607880 184607880 C G TRAPPC11 Silent p.L624L 0.29 TCGA-DS-A1OB-01 4 2702199 2702199 G C FAM193A Missense_Mutation p.E1143Q 0.24 deleterious(0.03) benign(0.002) TCGA-DS-A1OB-01 4 2941334 2941334 C G NOP14 Missense_Mutation p.Q746H 0.16 tolerated(0.16) benign(0.049) TCGA-DS-A1OB-01 4 53728800 53728800 C T RASL11B Silent p.S42S 0.24 TCGA-DS-A1OB-01 4 5696190 5696190 C T EVC2 Missense_Mutation p.E108K 0.37 tolerated(0.09) benign(0.007) TCGA-DS-A1OB-01 4 57344554 57344554 G C SRP72 Missense_Mutation p.E218Q 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-DS-A1OB-01 4 77227873 77227873 G A FAM47E-STBD1 5'UTR 0.41 TCGA-DS-A1OB-01 4 78647324 78647333 GAAATCAAAG - CNOT6L Frame_Shift_Del p.F482Kfs*3 0.14 TCGA-DS-A1OB-01 4 81123366 81123366 C A PRDM8 Silent p.A250A 0.35 TCGA-DS-A1OB-01 4 8372712 8372712 C A ACOX3 Missense_Mutation p.D636Y 0.38 deleterious(0) probably_damaging(0.98) TCGA-DS-A1OB-01 4 84516036 84516036 G A AGPAT9 Silent p.Q259Q 0.37 TCGA-DS-A1OB-01 4 88732964 88732964 C T IBSP Missense_Mutation p.R286C 0.25 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 5 115361740 115361740 G A AQPEP Silent p.Q966Q 0.53 TCGA-DS-A1OB-01 5 131825158 131825158 G A IRF1 Missense_Mutation p.R5W 0.74 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 5 140186804 140186804 C T PCDHA4 Missense_Mutation p.S11F 0.66 tolerated_low_confidence(0.42) benign(0.002) TCGA-DS-A1OB-01 5 140209579 140209579 C T PCDHA6 Missense_Mutation p.R635C 0.77 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-DS-A1OB-01 5 140553026 140553026 G C PCDHB7 Missense_Mutation p.E204Q 0.30 deleterious_low_confidence(0.03) benign(0.024) TCGA-DS-A1OB-01 5 140580539 140580539 G A PCDHB11 Missense_Mutation p.E398K 0.74 tolerated_low_confidence(0.58) benign(0.026) TCGA-DS-A1OB-01 5 140793463 140793463 G A PCDHGA10 Missense_Mutation p.D241N 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DS-A1OB-01 5 140793883 140793883 G A PCDHGA10 Missense_Mutation p.E381K 0.38 deleterious_low_confidence(0.01) benign(0.184) TCGA-DS-A1OB-01 5 140793888 140793888 G A PCDHGA10 Silent p.Q382Q 0.38 TCGA-DS-A1OB-01 5 140793985 140793985 G C PCDHGA10 Missense_Mutation p.D415H 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DS-A1OB-01 5 140857775 140857775 C G PCDHGC3 Missense_Mutation p.L698V 0.08 tolerated(0.74) benign(0.005) TCGA-DS-A1OB-01 5 150110998 150110998 G A DCTN4 Silent p.I204I 0.33 TCGA-DS-A1OB-01 5 150923101 150923101 G A FAT2 Silent p.F2529F 0.76 TCGA-DS-A1OB-01 5 150923541 150923541 G A FAT2 Nonsense_Mutation p.Q2383* 0.75 TCGA-DS-A1OB-01 5 150924454 150924454 G A FAT2 Silent p.I2078I 0.77 TCGA-DS-A1OB-01 5 150925072 150925072 G A FAT2 Silent p.F1872F 0.77 TCGA-DS-A1OB-01 5 150925107 150925107 G A FAT2 Missense_Mutation p.H1861Y 0.81 benign(0.005) TCGA-DS-A1OB-01 5 153414509 153414509 G A FAM114A2 Missense_Mutation p.S2L 0.29 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-DS-A1OB-01 5 156589974 156589974 C G FAM71B Missense_Mutation p.K434N 0.25 deleterious(0.03) possibly_damaging(0.797) TCGA-DS-A1OB-01 5 168112800 168112800 G A SLIT3 Silent p.F1149F 0.44 TCGA-DS-A1OB-01 5 168119691 168119691 C T SLIT3 Missense_Mutation p.E1033K 0.81 tolerated(0.07) benign(0.359) TCGA-DS-A1OB-01 5 169810809 169810809 G A KCNMB1 Silent p.I60I 0.86 TCGA-DS-A1OB-01 5 177422907 177422907 C T PROP1 Missense_Mutation p.E10K 0.30 tolerated_low_confidence(0.34) benign(0.001) TCGA-DS-A1OB-01 5 180582476 180582476 C T OR2V2 Silent p.F178F 0.72 TCGA-DS-A1OB-01 5 37157813 37157813 G A C5orf42 Missense_Mutation p.S2639L 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-DS-A1OB-01 5 41161939 41161939 C T C6 Silent p.E438E 0.30 TCGA-DS-A1OB-01 5 43297165 43297165 G A HMGCS1 Silent p.L226L 0.50 TCGA-DS-A1OB-01 5 49706715 49706715 G C EMB Missense_Mutation p.F156L 0.55 tolerated(1) benign(0.01) TCGA-DS-A1OB-01 5 54721846 54721848 TCA - PPAP2A In_Frame_Del p.M191del 0.10 TCGA-DS-A1OB-01 5 56176548 56176548 C T MAP3K1 Nonsense_Mutation p.Q700* 0.30 TCGA-DS-A1OB-01 5 56558498 56558498 G A GPBP1 Silent p.K454K 0.41 TCGA-DS-A1OB-01 5 653249 653249 G T CEP72 Missense_Mutation p.G642V 0.51 deleterious(0) possibly_damaging(0.843) TCGA-DS-A1OB-01 5 66084601 66084601 G A MAST4 Silent p.A207A 0.57 TCGA-DS-A1OB-01 5 80502719 80502719 C G RASGRF2 Missense_Mutation p.Q988E 0.32 tolerated(0.11) benign(0.129) TCGA-DS-A1OB-01 5 96440925 96440925 G C LIX1 Nonsense_Mutation p.S151* 0.78 TCGA-DS-A1OB-01 6 102074312 102074312 C T GRIK2 Missense_Mutation p.S114L 0.27 tolerated(0.38) benign(0.418) TCGA-DS-A1OB-01 6 109752510 109752510 C T PPIL6 Silent p.V90V 0.21 TCGA-DS-A1OB-01 6 11190506 11190506 C T NEDD9 Silent p.V532V 0.29 TCGA-DS-A1OB-01 6 117862102 117862102 G A DCBLD1 Missense_Mutation p.R424H 0.29 tolerated(0.43) possibly_damaging(0.715) TCGA-DS-A1OB-01 6 118588217 118588217 C T SLC35F1 Silent p.I179I 0.17 TCGA-DS-A1OB-01 6 123319121 123319121 G C CLVS2 Missense_Mutation p.E67Q 0.09 tolerated(0.11) benign(0.158) TCGA-DS-A1OB-01 6 129723586 129723586 G C LAMA2 Missense_Mutation p.E1894Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 6 130497126 130497126 G C SAMD3 Missense_Mutation p.R228G 0.20 deleterious(0) probably_damaging(0.996) TCGA-DS-A1OB-01 6 134210650 134210650 G A TCF21 Missense_Mutation p.E39K 0.28 tolerated(0.21) benign(0.302) TCGA-DS-A1OB-01 6 144263556 144263556 C T PLAGL1 Missense_Mutation p.E133K 0.21 tolerated(0.11) probably_damaging(0.997) TCGA-DS-A1OB-01 6 149721703 149721703 G C SUMO4 Missense_Mutation p.R59T 0.10 deleterious(0.01) benign(0.444) TCGA-DS-A1OB-01 6 152668322 152668322 G C SYNE1 Missense_Mutation p.Q3984E 0.26 benign(0.003) TCGA-DS-A1OB-01 6 152730751 152730751 C G SYNE1 Silent p.V2108V 0.14 TCGA-DS-A1OB-01 6 158288647 158288647 C G SNX9 Missense_Mutation p.I27M 0.15 tolerated(0.09) probably_damaging(0.99) TCGA-DS-A1OB-01 6 168319424 168319424 G A MLLT4 Missense_Mutation p.E900K 0.20 deleterious(0.03) benign(0.138) TCGA-DS-A1OB-01 6 170140334 170140334 C T TCTE3 Missense_Mutation p.E182K 0.18 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OB-01 6 24785924 24785924 C T GMNN Missense_Mutation p.S176F 0.29 tolerated(0.24) benign(0.056) TCGA-DS-A1OB-01 6 25619770 25619770 G A LRRC16A Missense_Mutation p.D1359N 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-DS-A1OB-01 6 26022074 26022074 C T HIST1H4A Silent p.R56R 0.10 TCGA-DS-A1OB-01 6 26022080 26022080 G T HIST1H4A Silent p.V58V 0.12 TCGA-DS-A1OB-01 6 26022119 26022119 C G HIST1H4A Silent p.V71V 0.08 TCGA-DS-A1OB-01 6 26240855 26240855 C T HIST1H4F Missense_Mutation p.R68W 0.11 tolerated(0.05) possibly_damaging(0.619) TCGA-DS-A1OB-01 6 26247014 26247014 T C HIST1H4G Silent p.E64E 0.08 TCGA-DS-A1OB-01 6 26251926 26251926 G A HIST1H2BH Silent p.K16K 0.41 TCGA-DS-A1OB-01 6 27775346 27775346 C G HIST1H2BL Silent p.S113S 0.05 TCGA-DS-A1OB-01 6 27775412 27775412 G A HIST1H2BL Silent p.T91T 0.08 TCGA-DS-A1OB-01 6 27782992 27782992 C T HIST1H2BM Silent p.S57S 0.08 TCGA-DS-A1OB-01 6 27782998 27782998 T C HIST1H2BM Silent p.A59A 0.10 TCGA-DS-A1OB-01 6 27783097 27783097 G C HIST1H2BM Silent p.S92S 0.11 TCGA-DS-A1OB-01 6 27792246 27792246 C T HIST1H4J 3'UTR 0.12 TCGA-DS-A1OB-01 6 28962908 28962908 G C ZNF311 Nonsense_Mutation p.S624* 0.28 TCGA-DS-A1OB-01 6 28964000 28964000 G C ZNF311 Nonsense_Mutation p.S260* 0.29 TCGA-DS-A1OB-01 6 30539290 30539290 C T ABCF1 Missense_Mutation p.P9L 0.15 tolerated_low_confidence(0.05) unknown(0) TCGA-DS-A1OB-01 6 30539323 30539323 G A ABCF1 Missense_Mutation p.S20N 0.12 tolerated_low_confidence(0.38) benign(0.002) TCGA-DS-A1OB-01 6 30546145 30546145 G A ABCF1 Missense_Mutation p.G122R 0.29 tolerated_low_confidence(0.23) probably_damaging(0.995) TCGA-DS-A1OB-01 6 30593616 30593616 T G MRPS18B 3'UTR 0.17 TCGA-DS-A1OB-01 6 30624254 30624254 C G DHX16 Missense_Mutation p.D782H 0.24 deleterious(0) unknown(0) TCGA-DS-A1OB-01 6 30672177 30672177 G A MDC1 Missense_Mutation p.R1595W 0.16 tolerated(0.14) benign(0.005) TCGA-DS-A1OB-01 6 30894034 30894034 G A VARS2 3'UTR 0.33 TCGA-DS-A1OB-01 6 31541583 31541583 C G LTA 3'UTR 0.47 TCGA-DS-A1OB-01 6 31778310 31778310 A G HSPA1L Silent p.F480F 0.09 TCGA-DS-A1OB-01 6 31778313 31778313 C G HSPA1L Silent p.T479T 0.08 TCGA-DS-A1OB-01 6 31778448 31778448 A G HSPA1L Silent p.S434S 0.06 TCGA-DS-A1OB-01 6 31778502 31778502 T G HSPA1L Silent p.I416I 0.07 TCGA-DS-A1OB-01 6 31778580 31778580 T C HSPA1L Silent p.V390V 0.10 TCGA-DS-A1OB-01 6 31778583 31778583 C G HSPA1L Missense_Mutation p.K389N 0.09 tolerated_low_confidence(0.39) benign(0.008) TCGA-DS-A1OB-01 6 31778702 31778702 G T HSPA1L Silent p.R350R 0.10 TCGA-DS-A1OB-01 6 31778902 31778902 T C HSPA1L Missense_Mutation p.N283S 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-DS-A1OB-01 6 31779087 31779087 T C HSPA1L Silent p.V221V 0.11 TCGA-DS-A1OB-01 6 31779327 31779327 G C HSPA1L Silent p.V141V 0.08 TCGA-DS-A1OB-01 6 31779374 31779374 A G HSPA1L Silent p.L126L 0.12 TCGA-DS-A1OB-01 6 31779375 31779375 T C HSPA1L Silent p.V125V 0.13 TCGA-DS-A1OB-01 6 31779591 31779591 A G HSPA1L Silent p.I53I 0.11 TCGA-DS-A1OB-01 6 31779609 31779609 T C HSPA1L Silent p.T47T 0.13 TCGA-DS-A1OB-01 6 31779678 31779678 C T HSPA1L Silent p.Q24Q 0.13 TCGA-DS-A1OB-01 6 31779693 31779693 A G HSPA1L Silent p.C19C 0.14 TCGA-DS-A1OB-01 6 31783584 31783584 C T HSPA1A Silent p.C17C 0.17 TCGA-DS-A1OB-01 6 31783599 31783599 A G HSPA1A Silent p.Q22Q 0.25 TCGA-DS-A1OB-01 6 31948495 31948495 C G STK19 Silent p.L326L 0.15 TCGA-DS-A1OB-01 6 32041502 32041502 C T RNA5SP206 3'Flank 0.36 TCGA-DS-A1OB-01 6 33218586 33218586 G A VPS52 3'UTR 0.12 TCGA-DS-A1OB-01 6 34024452 34024452 C T GRM4 Missense_Mutation p.R346H 0.21 deleterious(0.04) probably_damaging(0.916) TCGA-DS-A1OB-01 6 35280126 35280126 G T DEF6 Silent p.V157V 0.15 TCGA-DS-A1OB-01 6 35280136 35280136 G A DEF6 Missense_Mutation p.E161K 0.13 tolerated(0.25) possibly_damaging(0.852) TCGA-DS-A1OB-01 6 35280145 35280145 G T DEF6 Nonsense_Mutation p.E164* 0.11 TCGA-DS-A1OB-01 6 35987386 35987386 C G SLC26A8 Missense_Mutation p.E33D 0.41 deleterious(0.02) probably_damaging(0.966) TCGA-DS-A1OB-01 6 36564699 36564699 G C SRSF3 Missense_Mutation p.E54Q 0.15 deleterious(0.01) probably_damaging(0.93) TCGA-DS-A1OB-01 6 38939383 38939383 C T DNAH8 Missense_Mutation p.S3939L 0.19 probably_damaging(1) TCGA-DS-A1OB-01 6 40400856 40400856 C T LRFN2 5'UTR 0.31 TCGA-DS-A1OB-01 6 41185640 41185640 A G TREML3P RNA 0.11 TCGA-DS-A1OB-01 6 41185673 41185673 A G TREML3P RNA 0.10 TCGA-DS-A1OB-01 6 43006701 43006701 C T CUL7 Missense_Mutation p.R1524Q 0.28 tolerated(0.7) benign(0.002) TCGA-DS-A1OB-01 6 43027950 43027950 G A KLC4 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0.043) TCGA-DS-A1OB-01 6 43040576 43040576 C G KLC4 Missense_Mutation p.I519M 0.25 tolerated(0.05) benign(0.318) TCGA-DS-A1OB-01 6 44274965 44274965 C T AARS2 Intron 0.30 TCGA-DS-A1OB-01 6 45917088 45917088 G A CLIC5 Silent p.P227P 0.12 TCGA-DS-A1OB-01 6 46190867 46190867 G C RCAN2 3'UTR 0.40 TCGA-DS-A1OB-01 6 7231090 7231090 C T RREB1 Silent p.L920L 0.25 TCGA-DS-A1OB-01 6 7581100 7581100 C A DSP Missense_Mutation p.F1559L 0.30 benign(0) TCGA-DS-A1OB-01 6 7581394 7581394 C T DSP Silent p.L1657L 0.25 TCGA-DS-A1OB-01 6 7584100 7584100 C G DSP Nonsense_Mutation p.S2202* 0.21 TCGA-DS-A1OB-01 6 80228445 80228445 G A LCA5 Missense_Mutation p.S56L 0.18 tolerated(0.16) benign(0.131) TCGA-DS-A1OB-01 6 86281868 86281868 G A SNX14 Missense_Mutation p.A135V 0.29 deleterious(0.05) benign(0.426) TCGA-DS-A1OB-01 6 90577465 90577465 G A CASP8AP2 RNA 0.29 TCGA-DS-A1OB-01 6 99781307 99781307 C T FAXC Silent p.V173V 0.38 TCGA-DS-A1OB-01 7 100085904 100085904 G A NYAP1 Missense_Mutation p.R187Q 0.16 tolerated(0.14) possibly_damaging(0.656) TCGA-DS-A1OB-01 7 100210422 100210422 G C MOSPD3 Missense_Mutation p.R3P 0.44 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DS-A1OB-01 7 100210442 100210442 G A MOSPD3 Missense_Mutation p.E10K 0.34 deleterious_low_confidence(0.01) benign(0.242) TCGA-DS-A1OB-01 7 100238732 100238732 G A TFR2 Silent p.F51F 0.35 TCGA-DS-A1OB-01 7 100490013 100490013 C G ACHE Missense_Mutation p.E499Q 0.18 tolerated(0.16) benign(0.004) TCGA-DS-A1OB-01 7 100686836 100686836 C T MUC17 Missense_Mutation p.P4047S 0.18 possibly_damaging(0.641) TCGA-DS-A1OB-01 7 100797783 100797783 C T AP1S1 5'UTR 0.18 TCGA-DS-A1OB-01 7 102960064 102960064 C G DNAJC2 Missense_Mutation p.E412Q 0.10 tolerated(0.62) benign(0.333) TCGA-DS-A1OB-01 7 103969584 103969584 C G LHFPL3 Missense_Mutation p.I119M 0.08 deleterious(0) possibly_damaging(0.587) TCGA-DS-A1OB-01 7 105752725 105752725 C T SYPL1 Intron 0.29 TCGA-DS-A1OB-01 7 111418353 111418353 G A DOCK4 Missense_Mutation p.L1211F 0.35 deleterious(0.01) benign(0.049) TCGA-DS-A1OB-01 7 111927197 111927197 T C ZNF277 Intron 0.19 TCGA-DS-A1OB-01 7 112090720 112090720 C G IFRD1 5'UTR 0.50 TCGA-DS-A1OB-01 7 123302286 123302286 G A LMOD2 Missense_Mutation p.V216I 0.39 tolerated(0.08) benign(0.017) TCGA-DS-A1OB-01 7 128483349 128483349 G A FLNC Missense_Mutation p.E873K 0.11 deleterious(0.04) probably_damaging(0.998) TCGA-DS-A1OB-01 7 141724895 141724895 G T MGAM Nonsense_Mutation p.E310* 0.18 TCGA-DS-A1OB-01 7 142962141 142962141 C A GSTK1 Missense_Mutation p.L114M 0.82 deleterious(0.02) probably_damaging(0.998) TCGA-DS-A1OB-01 7 143826553 143826553 G T OR2A14 Silent p.V116V 0.11 TCGA-DS-A1OB-01 7 143826554 143826554 A T OR2A14 Missense_Mutation p.M117L 0.12 deleterious(0.02) possibly_damaging(0.484) TCGA-DS-A1OB-01 7 143826963 143826963 G A OR2A14 Missense_Mutation p.S253N 0.08 tolerated(0.22) benign(0.204) TCGA-DS-A1OB-01 7 149133726 149133726 C A ZNF777 Nonsense_Mutation p.E427* 0.28 TCGA-DS-A1OB-01 7 149545287 149545287 C T ZNF862 Silent p.F235F 0.28 TCGA-DS-A1OB-01 7 150439341 150439341 C T GIMAP5 Silent p.C38C 0.08 TCGA-DS-A1OB-01 7 150439413 150439413 G A GIMAP5 Silent p.V62V 0.07 TCGA-DS-A1OB-01 7 150439432 150439432 A G GIMAP5 Missense_Mutation p.K69E 0.09 tolerated(1) benign(0.002) TCGA-DS-A1OB-01 7 150439470 150439470 T C GIMAP5 Silent p.V81V 0.08 TCGA-DS-A1OB-01 7 150439882 150439882 C T GIMAP5 Missense_Mutation p.H219Y 0.08 tolerated(1) benign(0.015) TCGA-DS-A1OB-01 7 151859226 151859226 C T KMT2C Silent p.E3812E 0.13 TCGA-DS-A1OB-01 7 152027747 152027747 G A KMT2C Nonsense_Mutation p.R110* 0.78 TCGA-DS-A1OB-01 7 155090046 155090046 G A INSIG1 Silent p.A17A 0.19 TCGA-DS-A1OB-01 7 158464293 158464293 G C NCAPG2 Silent p.L464L 0.28 TCGA-DS-A1OB-01 7 16725588 16725588 C T BZW2 Missense_Mutation p.S155L 0.33 tolerated(0.08) benign(0.026) TCGA-DS-A1OB-01 7 20198677 20198677 G C MACC1 Missense_Mutation p.S436C 0.25 tolerated(0.4) possibly_damaging(0.838) TCGA-DS-A1OB-01 7 20767983 20767983 C T ABCB5 Silent p.F924F 0.17 TCGA-DS-A1OB-01 7 20784957 20784957 G A ABCB5 Missense_Mutation p.E1109K 0.20 deleterious(0) possibly_damaging(0.894) TCGA-DS-A1OB-01 7 2311486 2311486 G A SNX8 Missense_Mutation p.S180L 0.19 tolerated(0.09) benign(0.361) TCGA-DS-A1OB-01 7 23183496 23183496 G A KLHL7 Silent p.L215L 0.15 TCGA-DS-A1OB-01 7 30174819 30174819 G A MTURN Missense_Mutation p.A23T 0.56 deleterious_low_confidence(0.04) probably_damaging(0.913) TCGA-DS-A1OB-01 7 30477263 30477263 G T NOD1 Silent p.G821G 0.32 TCGA-DS-A1OB-01 7 35293146 35293146 G A TBX20 Missense_Mutation p.S29F 0.36 deleterious(0.02) benign(0.058) TCGA-DS-A1OB-01 7 43477706 43477706 G A HECW1 Silent p.S302S 0.23 TCGA-DS-A1OB-01 7 44054207 44054207 G A SPDYE1 3'Flank 0.30 TCGA-DS-A1OB-01 7 44579118 44579118 G A NPC1L1 Missense_Mutation p.S293F 0.33 tolerated(0.7) benign(0.284) TCGA-DS-A1OB-01 7 44739823 44739823 C T OGDH Silent p.F838F 0.18 TCGA-DS-A1OB-01 7 48237909 48237909 C G ABCA13 Nonsense_Mutation p.S80* 0.27 TCGA-DS-A1OB-01 7 48314924 48314924 C T ABCA13 Silent p.V1887V 0.19 TCGA-DS-A1OB-01 7 552064 552064 C G PDGFA Silent p.L63L 0.14 TCGA-DS-A1OB-01 7 5540241 5540241 G A FBXL18 Silent p.I553I 0.57 TCGA-DS-A1OB-01 7 57188238 57188238 C T ZNF479 Missense_Mutation p.R295K 0.10 tolerated(1) benign(0.006) TCGA-DS-A1OB-01 7 5984754 5984754 C G RSPH10B Missense_Mutation p.L490F 0.19 tolerated(0.46) possibly_damaging(0.728) TCGA-DS-A1OB-01 7 6068293 6068293 G C EIF2AK1 Missense_Mutation p.L495V 0.16 tolerated(0.3) possibly_damaging(0.627) TCGA-DS-A1OB-01 7 6505873 6505873 C T KDELR2 Missense_Mutation p.E145K 0.15 tolerated(0.06) possibly_damaging(0.899) TCGA-DS-A1OB-01 7 65553807 65553807 C T ASL Silent p.F244F 0.37 TCGA-DS-A1OB-01 7 65553861 65553861 C G ASL Silent p.L262L 0.40 TCGA-DS-A1OB-01 7 72988453 72988453 C G TBL2 Splice_Site p.X88_splice 0.36 TCGA-DS-A1OB-01 7 73118698 73118698 C T STX1A Silent p.L113L 0.45 TCGA-DS-A1OB-01 7 74103550 74103550 C G GTF2I Missense_Mutation p.L30V 0.47 tolerated(0.07) benign(0.065) TCGA-DS-A1OB-01 7 76058686 76058686 G A ZP3 Intron 0.23 TCGA-DS-A1OB-01 7 77325879 77325879 C G RSBN1L Silent p.L31L 0.12 TCGA-DS-A1OB-01 7 801506 801506 C T HEATR2 Silent p.L529L 0.33 TCGA-DS-A1OB-01 7 87038587 87038587 G C ABCB4 Missense_Mutation p.L1016V 0.24 tolerated(0.29) benign(0.003) TCGA-DS-A1OB-01 7 87530078 87530078 G A DBF4 Splice_Site p.X270_splice 0.12 TCGA-DS-A1OB-01 7 92732383 92732383 C G SAMD9 Missense_Mutation p.D1010H 0.29 tolerated(0.06) benign(0.295) TCGA-DS-A1OB-01 7 93516176 93516176 G A TFPI2 Missense_Mutation p.R222C 0.21 tolerated(0.14) benign(0.066) TCGA-DS-A1OB-01 7 97361927 97361927 G A TAC1 Translation_Start_Site p.M1? 0.18 deleterious(0) probably_damaging(0.986) TCGA-DS-A1OB-01 7 99364043 99364043 C T CYP3A4 Silent p.L274L 0.14 TCGA-DS-A1OB-01 7 99370225 99370225 G A CYP3A4 Silent p.F102F 0.27 TCGA-DS-A1OB-01 7 99580895 99580895 G C AZGP1P1 RNA 0.10 TCGA-DS-A1OB-01 8 101936232 101936232 G A YWHAZ Missense_Mutation p.S210L 0.40 deleterious_low_confidence(0.04) benign(0.105) TCGA-DS-A1OB-01 8 125463050 125463050 C G TRMT12 5'UTR 0.14 TCGA-DS-A1OB-01 8 128750945 128750945 C T MYC Missense_Mutation p.S161L 0.72 deleterious(0) possibly_damaging(0.888) TCGA-DS-A1OB-01 8 145160622 145160622 C G MAF1 Missense_Mutation p.I12M 0.45 tolerated(0.08) benign(0.086) TCGA-DS-A1OB-01 8 145773815 145773815 C T ARHGAP39 Missense_Mutation p.D219N 0.29 deleterious(0.05) probably_damaging(0.987) TCGA-DS-A1OB-01 8 16035455 16035455 C G MSR1 Missense_Mutation p.D15H 0.52 deleterious(0.01) possibly_damaging(0.671) TCGA-DS-A1OB-01 8 27925085 27925085 C T NUGGC Silent p.A219A 0.55 TCGA-DS-A1OB-01 8 28608263 28608263 C T EXTL3 Silent p.I880I 0.68 TCGA-DS-A1OB-01 8 38172958 38172958 C G WHSC1L1 Missense_Mutation p.M697I 0.11 deleterious(0.01) benign(0.002) TCGA-DS-A1OB-01 8 68956759 68956759 C T PREX2 Missense_Mutation p.R293W 0.42 deleterious(0.02) probably_damaging(0.991) TCGA-DS-A1OB-01 9 100919874 100919874 C G CORO2A Missense_Mutation p.E23D 0.53 tolerated(0.45) possibly_damaging(0.533) TCGA-DS-A1OB-01 9 117051021 117051021 G A COL27A1 Missense_Mutation p.D1362N 0.46 unknown(0) TCGA-DS-A1OB-01 9 124976014 124976014 G A LHX6 Nonsense_Mutation p.Q309* 0.35 TCGA-DS-A1OB-01 9 127644837 127644837 C G GOLGA1 Missense_Mutation p.Q639H 0.56 deleterious(0.02) benign(0.26) TCGA-DS-A1OB-01 9 130674558 130674558 C T ST6GALNAC4 Silent p.T200T 0.18 TCGA-DS-A1OB-01 9 130674603 130674603 C G ST6GALNAC4 Silent p.T185T 0.08 TCGA-DS-A1OB-01 9 136287555 136287555 C G ADAMTS13 5'UTR 0.59 TCGA-DS-A1OB-01 9 139276445 139276445 C G SNAPC4 Silent p.V716V 0.08 TCGA-DS-A1OB-01 9 140093922 140093922 C G TPRN Missense_Mutation p.Q414H 0.55 deleterious(0.01) possibly_damaging(0.898) TCGA-DS-A1OB-01 9 140676765 140676765 C T EHMT1 Silent p.F766F 0.56 TCGA-DS-A1OB-01 9 26919470 26919470 G T PLAA Missense_Mutation p.P419T 0.33 deleterious(0) probably_damaging(1) TCGA-DS-A1OB-01 9 27056346 27056346 G A IFT74 Silent p.E504E 0.38 TCGA-DS-A1OB-01 9 32634263 32634263 C G TAF1L Missense_Mutation p.D439H 0.40 deleterious(0) probably_damaging(0.977) TCGA-DS-A1OB-01 9 34372860 34372860 C G KIAA1161 5'UTR 0.39 TCGA-DS-A1OB-01 9 34381417 34381417 C G C9orf24 Missense_Mutation p.R141P 0.31 tolerated(0.06) probably_damaging(0.991) TCGA-DS-A1OB-01 9 85620384 85620384 C T RASEF Missense_Mutation p.D354N 0.41 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OB-01 9 87570246 87570246 G A NTRK2 Silent p.T662T 0.60 TCGA-DS-A1OB-01 X 100910608 100910608 C T ARMCX2 3'UTR 0.44 TCGA-DS-A1OB-01 X 102337934 102337934 G A NXF3 Missense_Mutation p.P230L 0.29 deleterious(0) possibly_damaging(0.796) TCGA-DS-A1OB-01 X 107400404 107400404 G A COL4A6 Silent p.I1634I 0.23 TCGA-DS-A1OB-01 X 107447744 107447744 C G COL4A6 Intron 0.27 TCGA-DS-A1OB-01 X 132437095 132437095 C T GPC4 Missense_Mutation p.D491N 0.29 deleterious(0) possibly_damaging(0.862) TCGA-DS-A1OB-01 X 134156311 134156311 T C FAM127C Missense_Mutation p.N60S 0.08 tolerated(0.64) benign(0.002) TCGA-DS-A1OB-01 X 135081054 135081054 G A SLC9A6 Silent p.T240T 0.22 TCGA-DS-A1OB-01 X 144903930 144903930 G A SLITRK2 5'UTR 0.30 TCGA-DS-A1OB-01 X 149638488 149638488 G A MAMLD1 Missense_Mutation p.A190T 0.08 tolerated(0.16) benign(0.082) TCGA-DS-A1OB-01 X 152815128 152815128 G A ATP2B3 Silent p.L504L 0.27 TCGA-DS-A1OB-01 X 153590624 153590624 C G FLNA Missense_Mutation p.G881A 0.19 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OB-01 X 15560306 15560306 C T BMX Silent p.F532F 0.31 TCGA-DS-A1OB-01 X 27766625 27766625 A G DCAF8L2 Missense_Mutation p.K538R 0.52 deleterious(0.02) possibly_damaging(0.519) TCGA-DS-A1OB-01 X 3002382 3002382 C G ARSF Missense_Mutation p.L169V 0.10 tolerated(0.15) possibly_damaging(0.855) TCGA-DS-A1OB-01 X 32472913 32472913 C G DMD Missense_Mutation p.E1157Q 0.47 benign(0.132) TCGA-DS-A1OB-01 X 41203072 41203072 G A DDX3X Missense_Mutation p.M254I 0.39 tolerated(0.43) benign(0) TCGA-DS-A1OB-01 X 44703936 44703936 G A DUSP21 Missense_Mutation p.M186I 0.28 tolerated(0.39) benign(0) TCGA-DS-A1OB-01 X 48163730 48163730 T - SSX9 RNA 0.18 TCGA-DS-A1OB-01 X 49851213 49851213 C T CLCN5 Missense_Mutation p.R415W 0.21 deleterious(0) possibly_damaging(0.857) TCGA-DS-A1OB-01 X 49958838 49958838 G A AKAP4 Missense_Mutation p.R176C 0.38 tolerated(0.06) benign(0.005) TCGA-DS-A1OB-01 X 50131539 50131539 C T DGKK RNA 0.24 TCGA-DS-A1OB-01 X 53654442 53654442 C G HUWE1 Missense_Mutation p.E470Q 0.25 probably_damaging(0.986) TCGA-DS-A1OB-01 X 54359788 54359788 C T WNK3 Missense_Mutation p.E107K 0.12 tolerated(0.11) benign(0.017) TCGA-DS-A1OB-01 X 67412791 67412791 G A OPHN1 Nonsense_Mutation p.Q416* 0.30 TCGA-DS-A1OB-01 X 73065478 73065478 G C XIST RNA 0.10 TCGA-DS-A1OB-01 X 73811517 73811517 G A RLIM Missense_Mutation p.P545S 0.14 tolerated(0.1) benign(0.437) TCGA-DS-A1OB-01 X 78618144 78618144 C T ITM2A Silent p.L162L 0.28 TCGA-DS-A1OB-01 X 9656101 9656101 G A TBL1X Silent p.L134L 0.34 TCGA-DS-A1OB-01 X 99661943 99661943 G A PCDH19 Silent p.V551V 0.22 TCGA-DS-A1OC-01 10 100177438 100177438 G A HPS1 Silent p.V662V 0.33 TCGA-DS-A1OC-01 10 106959851 106959851 C G SORCS3 Missense_Mutation p.Q702E 0.54 tolerated(0.33) benign(0.001) TCGA-DS-A1OC-01 10 5020085 5020085 A G AKR1C1 3'UTR 0.27 TCGA-DS-A1OC-01 10 5020090 5020090 G A AKR1C1 3'UTR 0.22 TCGA-DS-A1OC-01 10 5488816 5488816 C T NET1 Intron 0.13 TCGA-DS-A1OC-01 10 65225319 65225319 C T JMJD1C Missense_Mutation p.R35Q 0.61 tolerated(0.22) benign(0.001) TCGA-DS-A1OC-01 10 70967645 70967645 C T SUPV3L1 Missense_Mutation p.L625F 0.55 deleterious(0) probably_damaging(0.997) TCGA-DS-A1OC-01 10 75258311 75258311 T C USP54 3'UTR 0.15 TCGA-DS-A1OC-01 10 75585063 75585063 C G CAMK2G Missense_Mutation p.E345Q 0.12 tolerated_low_confidence(0.31) benign(0.091) TCGA-DS-A1OC-01 10 76735894 76735894 A G KAT6B Missense_Mutation p.H600R 0.50 benign(0) TCGA-DS-A1OC-01 10 94393481 94393481 C G KIF11 Missense_Mutation p.Q602E 0.39 tolerated(0.26) benign(0.007) TCGA-DS-A1OC-01 10 95557293 95557293 G T LGI1 Missense_Mutation p.Q469H 0.65 deleterious(0.01) probably_damaging(1) TCGA-DS-A1OC-01 10 95791282 95791282 C A PLCE1 Missense_Mutation p.S160Y 0.12 deleterious_low_confidence(0.01) benign(0.165) TCGA-DS-A1OC-01 11 111796690 111796690 G A C11orf52 Missense_Mutation p.E47K 0.37 tolerated(0.33) benign(0.015) TCGA-DS-A1OC-01 11 123908827 123908827 T C OR10G7 Silent p.V294V 0.21 TCGA-DS-A1OC-01 11 123908839 123908839 T C OR10G7 Silent p.R290R 0.13 TCGA-DS-A1OC-01 11 123909011 123909011 C T OR10G7 Missense_Mutation p.R233K 0.08 deleterious(0.01) benign(0.232) TCGA-DS-A1OC-01 11 1642784 1642784 G A KRTAP5-4 Silent p.C180C 0.09 TCGA-DS-A1OC-01 11 1642880 1642880 A G KRTAP5-4 Silent p.S148S 0.08 TCGA-DS-A1OC-01 11 18266888 18266888 T C SAA2 3'UTR 0.11 TCGA-DS-A1OC-01 11 18266895 18266895 G A SAA2 3'UTR 0.11 TCGA-DS-A1OC-01 11 309223 309223 T C IFITM2 3'UTR 0.15 TCGA-DS-A1OC-01 11 309225 309225 T A IFITM2 3'UTR 0.14 TCGA-DS-A1OC-01 11 315009 315009 C T IFITM1 Silent p.L92L 0.17 TCGA-DS-A1OC-01 11 3832618 3832618 C G PGAP2 Silent p.L43L 0.26 TCGA-DS-A1OC-01 11 4843090 4843090 G T OR51F2 Missense_Mutation p.G159W 0.55 deleterious(0.02) probably_damaging(1) TCGA-DS-A1OC-01 11 55541501 55541501 C T OR5D13 Silent p.I196I 0.24 TCGA-DS-A1OC-01 11 56431576 56431576 C T OR5AR1 Nonsense_Mutation p.Q139* 0.11 TCGA-DS-A1OC-01 11 57971456 57971456 T C OR1S2 Missense_Mutation p.I66M 0.11 deleterious(0.01) benign(0.002) TCGA-DS-A1OC-01 11 57971457 57971457 A G OR1S2 Missense_Mutation p.I66T 0.10 tolerated(0.21) benign(0) TCGA-DS-A1OC-01 11 57971564 57971564 G A OR1S2 Silent p.L30L 0.08 TCGA-DS-A1OC-01 11 57982680 57982680 T C OR1S1 Missense_Mutation p.I155T 0.04 tolerated(0.28) benign(0.008) TCGA-DS-A1OC-01 11 5905521 5905521 G A OR52E4 5'UTR 0.52 TCGA-DS-A1OC-01 11 59481178 59481178 G A OR10V1 Silent p.V47V 0.33 TCGA-DS-A1OC-01 11 60183673 60183673 C G MS4A14 Nonsense_Mutation p.S444* 0.26 TCGA-DS-A1OC-01 11 609285 609285 G T PHRF1 Missense_Mutation p.D1276Y 0.41 deleterious(0) benign(0.112) TCGA-DS-A1OC-01 11 61249901 61249901 G A PPP1R32 Splice_Site p.X76_splice 0.28 TCGA-DS-A1OC-01 11 64519109 64519109 T A PYGM Missense_Mutation p.N596I 0.34 tolerated(0.06) benign(0.221) TCGA-DS-A1OC-01 11 65822729 65822729 G A SF3B2 Silent p.L147L 0.20 TCGA-DS-A1OC-01 11 66192531 66192531 G A NPAS4 Missense_Mutation p.E724K 0.34 tolerated(0.59) benign(0) TCGA-DS-A1OC-01 11 67059647 67059647 G A ANKRD13D Missense_Mutation p.E243K 0.48 deleterious(0) possibly_damaging(0.523) TCGA-DS-A1OC-01 11 71249735 71249735 G C KRTAP5-8 3'UTR 0.57 TCGA-DS-A1OC-01 11 71277140 71277140 G A KRTAP5-10 Silent p.Q169Q 0.08 TCGA-DS-A1OC-01 11 71277147 71277161 TGCTGTGTCCCCGTG - KRTAP5-10 In_Frame_Del p.V174_C178del 0.13 TCGA-DS-A1OC-01 11 71277173 71277173 T C KRTAP5-10 Silent p.S180S 0.15 TCGA-DS-A1OC-01 11 71277197 71277197 T C KRTAP5-10 Silent p.C188C 0.11 TCGA-DS-A1OC-01 11 71277309 71277309 T C KRTAP5-10 3'UTR 0.12 TCGA-DS-A1OC-01 11 71277311 71277311 A G KRTAP5-10 3'UTR 0.11 TCGA-DS-A1OC-01 11 71293474 71293474 A C KRTAP5-11 Missense_Mutation p.F137C 0.08 tolerated_low_confidence(1) unknown(0) TCGA-DS-A1OC-01 11 71293823 71293823 T A KRTAP5-11 Missense_Mutation p.S21C 0.30 deleterious_low_confidence(0) unknown(0) TCGA-DS-A1OC-01 11 85406273 85406273 G C SYTL2 Missense_Mutation p.L1262V 0.41 deleterious(0) probably_damaging(0.997) TCGA-DS-A1OC-01 12 109526072 109526072 T A ALKBH2 Missense_Mutation p.K242M 0.29 deleterious(0) probably_damaging(0.992) TCGA-DS-A1OC-01 12 11091555 11091555 C T TAS2R14 Missense_Mutation p.M84I 0.54 tolerated(1) benign(0.007) TCGA-DS-A1OC-01 12 124416370 124416370 G A DNAH10 Silent p.T4250T 0.13 TCGA-DS-A1OC-01 12 15073916 15073916 G A ERP27 Missense_Mutation p.R134C 0.20 deleterious(0) possibly_damaging(0.903) TCGA-DS-A1OC-01 12 21971159 21971159 G A ABCC9 Silent p.L1232L 0.60 TCGA-DS-A1OC-01 12 49438017 49438017 C T KMT2D Silent p.A1718A 0.32 TCGA-DS-A1OC-01 12 52681031 52681031 G A KRT81 Silent p.L368L 0.12 TCGA-DS-A1OC-01 12 52761062 52761062 G A KRT85 Missense_Mutation p.S43F 0.42 tolerated(0.09) probably_damaging(0.991) TCGA-DS-A1OC-01 12 54798224 54798224 C G ITGA5 Missense_Mutation p.V485L 0.25 tolerated(0.06) benign(0.004) TCGA-DS-A1OC-01 12 55688303 55688303 G A OR6C6 Silent p.T238T 0.08 TCGA-DS-A1OC-01 12 56234912 56234912 C T MMP19 Silent p.K94K 0.32 TCGA-DS-A1OC-01 12 57485001 57485001 G C NAB2 Missense_Mutation p.E59D 0.35 tolerated(0.87) benign(0.028) TCGA-DS-A1OC-01 12 6153464 6153464 G A VWF Missense_Mutation p.P812L 0.44 tolerated(0.06) possibly_damaging(0.835) TCGA-DS-A1OC-01 12 69968409 69968409 C T FRS2 Missense_Mutation p.P401S 0.20 tolerated(0.22) possibly_damaging(0.814) TCGA-DS-A1OC-01 12 70004511 70004511 C G LRRC10 Silent p.L36L 0.44 TCGA-DS-A1OC-01 12 98927155 98927155 G T TMPO Missense_Mutation p.A374S 0.22 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-DS-A1OC-01 13 108862231 108862231 C T LIG4 Silent p.L462L 0.67 TCGA-DS-A1OC-01 13 113897336 113897336 G C CUL4A Missense_Mutation p.D364H 0.22 deleterious(0.02) possibly_damaging(0.55) TCGA-DS-A1OC-01 13 32910968 32910968 G T BRCA2 Nonsense_Mutation p.E826* 0.33 TCGA-DS-A1OC-01 13 45580364 45580364 C T GPALPP1 Silent p.D83D 0.16 TCGA-DS-A1OC-01 13 52536010 52536011 - G ATP7B Frame_Shift_Ins p.N637Qfs*118 0.59 TCGA-DS-A1OC-01 13 96293693 96293693 C G DZIP1 Silent p.L151L 0.50 TCGA-DS-A1OC-01 14 102549230 102549230 G A HSP90AA1 Intron 0.17 TCGA-DS-A1OC-01 14 105615570 105615570 C T JAG2 Missense_Mutation p.D564N 0.28 tolerated(0.05) benign(0.388) TCGA-DS-A1OC-01 14 106236243 106236243 C T IGHG3 Missense_Mutation p.E188K 0.11 tolerated(0.99) benign(0.087) TCGA-DS-A1OC-01 14 21928535 21928535 A G RAB2B 3'UTR 0.33 TCGA-DS-A1OC-01 14 24545748 24545748 G C CPNE6 Missense_Mutation p.E383Q 0.30 tolerated(0.43) benign(0.038) TCGA-DS-A1OC-01 14 53525268 53525268 C T DDHD1 Missense_Mutation p.G640E 0.29 deleterious(0.03) possibly_damaging(0.823) TCGA-DS-A1OC-01 14 59970581 59970581 G C JKAMP Missense_Mutation p.D243H 0.17 tolerated(0.09) benign(0.024) TCGA-DS-A1OC-01 14 72936741 72936741 C G RGS6 Silent p.A162A 0.20 TCGA-DS-A1OC-01 14 74402681 74402681 C G FAM161B Missense_Mutation p.E655D 0.18 tolerated(0.52) benign(0.013) TCGA-DS-A1OC-01 14 88789140 88789140 C T KCNK10 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-DS-A1OC-01 14 93273203 93273203 G A GOLGA5 Missense_Mutation p.E223K 0.32 tolerated(0.58) benign(0.003) TCGA-DS-A1OC-01 14 95081321 95081321 C T SERPINA3 Silent p.N181N 0.45 TCGA-DS-A1OC-01 14 96944864 96944864 G C AK7 Missense_Mutation p.E540Q 0.22 tolerated(0.07) probably_damaging(0.951) TCGA-DS-A1OC-01 15 41029892 41029892 A G RMDN3 Silent p.T386T 0.14 TCGA-DS-A1OC-01 15 42092085 42092085 G A MAPKBP1 Missense_Mutation p.R60Q 0.42 tolerated(0.06) benign(0.056) TCGA-DS-A1OC-01 15 45437191 45437191 G A DUOX1 Silent p.L745L 0.11 TCGA-DS-A1OC-01 15 51828879 51828879 T G DMXL2 Missense_Mutation p.S600R 0.37 deleterious(0.03) benign(0.088) TCGA-DS-A1OC-01 15 65685759 65685759 A T IGDCC4 Missense_Mutation p.F609I 0.16 deleterious(0.01) benign(0.219) TCGA-DS-A1OC-01 15 67878265 67878265 G T MAP2K5 Silent p.L120L 0.21 TCGA-DS-A1OC-01 15 69560957 69560957 G A GLCE Missense_Mutation p.D410N 0.16 tolerated(0.66) benign(0.002) TCGA-DS-A1OC-01 15 72069591 72069591 T C THSD4 Missense_Mutation p.Y979H 0.35 tolerated(0.11) benign(0.049) TCGA-DS-A1OC-01 15 72191121 72191121 C A MYO9A Missense_Mutation p.Q1241H 0.13 deleterious_low_confidence(0.04) benign(0.001) TCGA-DS-A1OC-01 15 75499074 75499074 A T C15orf39 Missense_Mutation p.R229W 0.14 deleterious(0) benign(0.185) TCGA-DS-A1OC-01 15 81201527 81201527 C A KIAA1199 Missense_Mutation p.F559L 0.35 deleterious(0) probably_damaging(0.995) TCGA-DS-A1OC-01 15 85325904 85325904 G C ZNF592 5'UTR 0.08 TCGA-DS-A1OC-01 15 91832822 91832822 G C SV2B Missense_Mutation p.G594R 0.26 tolerated(0.2) probably_damaging(0.979) TCGA-DS-A1OC-01 16 10788762 10788762 C G TEKT5 5'UTR 0.20 TCGA-DS-A1OC-01 16 11870659 11870659 C T ZC3H7A Missense_Mutation p.R138K 0.31 tolerated(0.06) benign(0.014) TCGA-DS-A1OC-01 16 1816594 1816594 A T MAPK8IP3 Missense_Mutation p.T961S 0.25 tolerated(0.41) benign(0.001) TCGA-DS-A1OC-01 16 20322520 20322520 C T GP2 3'UTR 0.11 TCGA-DS-A1OC-01 16 20395988 20395988 A T PDILT Missense_Mutation p.S130T 0.27 tolerated(0.3) possibly_damaging(0.761) TCGA-DS-A1OC-01 16 3063600 3063600 C T CLDN9 Silent p.A79A 0.08 TCGA-DS-A1OC-01 16 3063859 3063859 C T CLDN9 Silent p.L166L 0.10 TCGA-DS-A1OC-01 16 3065846 3065846 G C CLDN6 Silent p.T59T 0.08 TCGA-DS-A1OC-01 16 31373492 31373492 C G ITGAX Missense_Mutation p.Q395E 0.08 deleterious(0.04) benign(0.003) TCGA-DS-A1OC-01 16 31488743 31488743 C T TGFB1I1 Missense_Mutation p.P411L 0.44 deleterious(0) possibly_damaging(0.884) TCGA-DS-A1OC-01 16 31503399 31503399 T C C16orf58 Missense_Mutation p.K414E 0.23 tolerated(0.29) benign(0.001) TCGA-DS-A1OC-01 16 3716075 3716075 A T TRAP1 Missense_Mutation p.I427N 0.28 tolerated(0.6) benign(0.148) TCGA-DS-A1OC-01 16 4848114 4848114 G T ROGDI Silent p.L201L 0.11 TCGA-DS-A1OC-01 16 5125493 5125493 T A ALG1 Silent p.G165G 0.13 TCGA-DS-A1OC-01 16 56700792 56700792 C T MT1G Silent p.%3D 0.22 TCGA-DS-A1OC-01 16 56701251 56701251 C T MT1G Missense_Mutation p.E23K 0.07 tolerated(0.09) unknown(0) TCGA-DS-A1OC-01 16 56704962 56704962 T G MT1H 3'UTR 0.51 TCGA-DS-A1OC-01 16 57057717 57057717 A G NLRC5 Missense_Mutation p.S126G 0.35 tolerated(0.19) benign(0.005) TCGA-DS-A1OC-01 16 81965113 81965113 C G PLCG2 Missense_Mutation p.Q865E 0.06 tolerated(1) benign(0.013) TCGA-DS-A1OC-01 16 85702027 85702027 G C GSE1 Missense_Mutation p.E1138Q 0.14 tolerated(0.09) probably_damaging(0.99) TCGA-DS-A1OC-01 17 18634442 18634442 G A TRIM16L Silent p.L87L 0.16 TCGA-DS-A1OC-01 17 26942772 26942772 C A KIAA0100 Silent p.L2145L 0.32 TCGA-DS-A1OC-01 17 33984792 33984792 A G AP2B1 Silent p.G657G 0.32 TCGA-DS-A1OC-01 17 36214775 36214775 G T YWHAEP7 RNA 0.89 TCGA-DS-A1OC-01 17 37618489 37618489 G C CDK12 Missense_Mutation p.L55F 0.33 unknown(0) TCGA-DS-A1OC-01 17 40266554 40266554 G A KAT2A Silent p.F696F 0.19 TCGA-DS-A1OC-01 17 40556936 40556936 C T PTRF Silent p.A314A 0.44 TCGA-DS-A1OC-01 17 4638701 4638701 T C CXCL16 Missense_Mutation p.H154R 0.58 tolerated(0.5) benign(0) TCGA-DS-A1OC-01 17 47243614 47243614 G A B4GALNT2 Missense_Mutation p.V425M 0.14 tolerated(0.13) probably_damaging(0.982) TCGA-DS-A1OC-01 17 53124450 53124450 G A STXBP4 Missense_Mutation p.E316K 0.35 deleterious(0.03) benign(0.031) TCGA-DS-A1OC-01 17 59853848 59853848 C G BRIP1 Missense_Mutation p.E671Q 0.33 tolerated(0.06) possibly_damaging(0.84) TCGA-DS-A1OC-01 17 79164829 79164829 C G AZI1 Missense_Mutation p.E941Q 0.19 deleterious(0.02) benign(0.331) TCGA-DS-A1OC-01 17 79910712 79910712 G C NOTUM 3'UTR 0.36 TCGA-DS-A1OC-01 17 80048927 80048927 C T FASN Missense_Mutation p.R504H 0.25 tolerated(0.29) benign(0.003) TCGA-DS-A1OC-01 18 28993305 28993305 C G DSG4 Missense_Mutation p.A976G 0.09 tolerated(0.25) possibly_damaging(0.476) TCGA-DS-A1OC-01 18 33059274 33059274 G C INO80C Missense_Mutation p.N159K 0.21 deleterious(0.01) benign(0.406) TCGA-DS-A1OC-01 18 34289207 34289207 G C FHOD3 Missense_Mutation p.E621Q 0.15 tolerated_low_confidence(0.07) probably_damaging(0.993) TCGA-DS-A1OC-01 18 34320696 34320696 C G FHOD3 Silent p.P1043P 0.20 TCGA-DS-A1OC-01 19 10444485 10444485 C G ICAM3 3'UTR 0.26 TCGA-DS-A1OC-01 19 10670571 10670571 G A KRI1 Missense_Mutation p.S287L 0.17 tolerated(0.14) possibly_damaging(0.459) TCGA-DS-A1OC-01 19 11488639 11488639 G A EPOR 3'UTR 0.06 TCGA-DS-A1OC-01 19 11597972 11597972 C G ZNF653 Missense_Mutation p.E391D 0.37 tolerated(0.14) benign(0.021) TCGA-DS-A1OC-01 19 14043424 14043424 T C PODNL1 3'UTR 0.17 TCGA-DS-A1OC-01 19 1432667 1432667 A C DAZAP1 Silent p.P342P 0.41 TCGA-DS-A1OC-01 19 18179319 18179319 G A IL12RB1 Nonsense_Mutation p.R403* 0.43 TCGA-DS-A1OC-01 19 21558085 21558085 G C ZNF738 Missense_Mutation p.E48Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-DS-A1OC-01 19 23542561 23542561 T C ZNF91 Missense_Mutation p.R1074G 0.13 tolerated(1) benign(0.008) TCGA-DS-A1OC-01 19 30313028 30313028 G C CCNE1 Missense_Mutation p.Q277H 0.31 tolerated(0.07) probably_damaging(1) TCGA-DS-A1OC-01 19 38903577 38903577 C T RASGRP4 Missense_Mutation p.R510H 0.38 tolerated(0.12) benign(0.003) TCGA-DS-A1OC-01 19 4234821 4234821 G A EBI3 Silent p.R179R 0.15 TCGA-DS-A1OC-01 19 42364896 42364896 C G RPS19 Missense_Mutation p.L18V 0.20 tolerated(0.13) benign(0.26) TCGA-DS-A1OC-01 19 43243016 43243016 C T PSG3 Missense_Mutation p.G97E 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-DS-A1OC-01 19 44611513 44611513 C G ZNF224 Missense_Mutation p.F400L 0.38 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OC-01 19 46027912 46027912 G A VASP Silent p.V347V 0.52 TCGA-DS-A1OC-01 19 50462144 50462144 G C SIGLEC11 Silent p.L373L 0.09 TCGA-DS-A1OC-01 19 51201202 51201202 C T SHANK1 Missense_Mutation p.G587R 0.85 probably_damaging(0.995) TCGA-DS-A1OC-01 19 51331009 51331009 G A KLK15 Nonsense_Mutation p.Q36* 0.12 TCGA-DS-A1OC-01 19 53645450 53645450 C G ZNF347 Missense_Mutation p.E212Q 0.12 tolerated(0.06) benign(0.103) TCGA-DS-A1OC-01 19 56133784 56133784 C T ZNF784 Missense_Mutation p.R102Q 0.70 tolerated(0.1) benign(0.022) TCGA-DS-A1OC-01 19 56228096 56228096 C G NLRP9 Silent p.L776L 0.56 TCGA-DS-A1OC-01 19 56701712 56701712 T C ZSCAN5B Silent p.P324P 0.08 TCGA-DS-A1OC-01 19 56704108 56704108 T A ZSCAN5B Missense_Mutation p.K105M 0.23 tolerated(0.24) benign(0.047) TCGA-DS-A1OC-01 19 56733189 56733189 C T ZSCAN5A Missense_Mutation p.V416I 0.12 tolerated(0.88) benign(0.009) TCGA-DS-A1OC-01 19 57175327 57175327 C T ZNF835 Missense_Mutation p.G414R 0.50 deleterious(0) probably_damaging(0.924) TCGA-DS-A1OC-01 19 57967117 57967117 G C VN1R1 Silent p.L246L 0.13 TCGA-DS-A1OC-01 19 6177305 6177305 T C ACSBG2 Silent p.V268V 0.09 TCGA-DS-A1OC-01 19 6664832 6664832 A T TNFSF14 3'UTR 0.19 TCGA-DS-A1OC-01 19 9058347 9058347 G C MUC16 Nonsense_Mutation p.S9700* 0.26 TCGA-DS-A1OC-01 1 10479831 10479831 C G PGD 3'UTR 0.12 TCGA-DS-A1OC-01 1 109554203 109554203 C A WDR47 Missense_Mutation p.W162C 0.10 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OC-01 1 117078713 117078713 G C CD58 Missense_Mutation p.R168G 0.62 tolerated(0.58) benign(0.001) TCGA-DS-A1OC-01 1 12062085 12062085 C G MFN2 Missense_Mutation p.T362R 0.09 deleterious(0) probably_damaging(0.998) TCGA-DS-A1OC-01 1 145473521 145473521 G A ANKRD34A Missense_Mutation p.E65K 0.35 deleterious(0.01) possibly_damaging(0.745) TCGA-DS-A1OC-01 1 149858563 149858563 C T HIST2H2AC Silent p.A13A 0.11 TCGA-DS-A1OC-01 1 149859383 149859383 C T HIST2H2AB Silent p.V28V 0.08 TCGA-DS-A1OC-01 1 149859398 149859398 A G HIST2H2AB Silent p.G23G 0.10 TCGA-DS-A1OC-01 1 149859428 149859428 A G HIST2H2AB Silent p.A13A 0.11 TCGA-DS-A1OC-01 1 152327060 152327060 C T FLG2 Missense_Mutation p.E1068K 0.28 unknown(0) TCGA-DS-A1OC-01 1 152327910 152327910 G A FLG2 Silent p.G784G 0.15 TCGA-DS-A1OC-01 1 152329162 152329162 C G FLG2 Missense_Mutation p.G367A 0.13 unknown(0) TCGA-DS-A1OC-01 1 154917484 154917484 C A PBXIP1 3'UTR 0.32 TCGA-DS-A1OC-01 1 154917485 154917485 C G PBXIP1 3'UTR 0.34 TCGA-DS-A1OC-01 1 155257095 155257095 G C HCN3 Missense_Mutation p.E537Q 0.18 deleterious(0.02) benign(0.317) TCGA-DS-A1OC-01 1 155451271 155451271 T C ASH1L Missense_Mutation p.T464A 0.52 tolerated_low_confidence(0.14) benign(0.002) TCGA-DS-A1OC-01 1 155686908 155686908 G A DAP3 Missense_Mutation p.E53K 0.13 deleterious(0) possibly_damaging(0.721) TCGA-DS-A1OC-01 1 156714017 156714017 C A HDGF Nonsense_Mutation p.E159* 0.15 TCGA-DS-A1OC-01 1 159505612 159505612 G A OR10J5 Silent p.F62F 0.54 TCGA-DS-A1OC-01 1 161017881 161017881 T C ARHGAP30 Missense_Mutation p.E977G 0.54 deleterious(0) possibly_damaging(0.728) TCGA-DS-A1OC-01 1 161070134 161070134 C G KLHDC9 3'UTR 0.35 TCGA-DS-A1OC-01 1 171178072 171178072 G A FMO2 Missense_Mutation p.G466R 0.75 deleterious(0) probably_damaging(1) TCGA-DS-A1OC-01 1 186307243 186307243 G C TPR Silent p.V1428V 0.25 TCGA-DS-A1OC-01 1 200816344 200816344 A C CAMSAP2 Missense_Mutation p.E372D 0.53 tolerated(0.17) benign(0.001) TCGA-DS-A1OC-01 1 209791254 209791254 C G LAMB3 Missense_Mutation p.E1017Q 0.42 tolerated(0.11) benign(0.136) TCGA-DS-A1OC-01 1 220232117 220232117 T C BPNT1 3'UTR 0.13 TCGA-DS-A1OC-01 1 220232118 220232118 G A BPNT1 3'UTR 0.09 TCGA-DS-A1OC-01 1 228248042 228248042 G C WNT3A 3'UTR 0.77 TCGA-DS-A1OC-01 1 236228177 236228177 C G NID1 Missense_Mutation p.R68T 0.38 tolerated(0.37) benign(0.034) TCGA-DS-A1OC-01 1 24130716 24130717 - CTCCTGCCTCAGCCTCCCGGGTTCAAGCGATT HMGCL Intron 0.11 TCGA-DS-A1OC-01 1 24130735 24130735 A G HMGCL Intron 0.19 TCGA-DS-A1OC-01 1 2938790 2938790 C T ACTRT2 Silent p.T180T 0.18 TCGA-DS-A1OC-01 1 29435895 29435895 T C EPB41 Silent p.A787A 0.36 TCGA-DS-A1OC-01 1 35852871 35852871 G C ZMYM4 Missense_Mutation p.D702H 0.38 tolerated(0.05) probably_damaging(0.979) TCGA-DS-A1OC-01 1 3638599 3638599 G C TP73 Missense_Mutation p.L148F 0.19 deleterious(0) probably_damaging(0.981) TCGA-DS-A1OC-01 1 36501846 36501846 G A AGO3 Missense_Mutation p.G607E 0.41 tolerated(0.15) benign(0.049) TCGA-DS-A1OC-01 1 3697514 3697515 - G LRRC47 3'UTR 0.19 TCGA-DS-A1OC-01 1 37271717 37271717 C T GRIK3 Missense_Mutation p.G768S 0.33 deleterious(0.01) probably_damaging(1) TCGA-DS-A1OC-01 1 39384983 39384983 C A RHBDL2 5'UTR 0.25 TCGA-DS-A1OC-01 1 41300636 41300636 C A KCNQ4 Intron 0.33 TCGA-DS-A1OC-01 1 45808438 45808438 G A TOE1 Intron 0.37 TCGA-DS-A1OC-01 1 46655952 46655953 - GG POMGNT1 Intron 0.21 TCGA-DS-A1OC-01 1 57489270 57489270 G T DAB1 Missense_Mutation p.Q277K 0.40 deleterious(0.03) benign(0.127) TCGA-DS-A1OC-01 1 62330039 62330039 C G INADL Missense_Mutation p.L857V 0.23 deleterious(0.02) benign(0.184) TCGA-DS-A1OC-01 1 64114222 64114222 G T PGM1 Missense_Mutation p.W411C 0.41 deleterious(0) probably_damaging(0.997) TCGA-DS-A1OC-01 1 66458569 66458569 A C PDE4B Intron 0.62 TCGA-DS-A1OC-01 1 66838239 66838239 G C PDE4B Missense_Mutation p.E697Q 0.15 tolerated_low_confidence(0.19) benign(0.002) TCGA-DS-A1OC-01 1 71418718 71418718 G T PTGER3 Missense_Mutation p.Q377K 0.26 tolerated(0.68) benign(0) TCGA-DS-A1OC-01 1 8390357 8390357 C G SLC45A1 Silent p.V268V 0.07 TCGA-DS-A1OC-01 1 89448299 89448299 C G RBMXL1 3'UTR 0.38 TCGA-DS-A1OC-01 1 89448325 89448325 T A RBMXL1 3'UTR 0.35 TCGA-DS-A1OC-01 1 94568695 94568695 C T ABCA4 Missense_Mutation p.R149K 0.38 tolerated(0.28) benign(0.003) TCGA-DS-A1OC-01 20 10639235 10639235 T C JAG1 Missense_Mutation p.Y192C 0.64 deleterious(0) probably_damaging(0.985) TCGA-DS-A1OC-01 20 1460691 1460691 G A SIRPB2 Silent p.S35S 0.14 TCGA-DS-A1OC-01 20 19970893 19970893 A C RIN2 Missense_Mutation p.K718T 0.57 deleterious(0) possibly_damaging(0.892) TCGA-DS-A1OC-01 20 34067239 34067257 CAGGGGCTCAGGTAGGGCC - CEP250 Splice_Site p.X761_splice 0.16 TCGA-DS-A1OC-01 20 35396428 35396428 T C DSN1 Missense_Mutation p.S125G 0.08 deleterious(0.02) benign(0.198) TCGA-DS-A1OC-01 20 43723445 43723445 G T KCNS1 3'UTR 0.24 TCGA-DS-A1OC-01 20 44047932 44047932 C G PIGT Intron 0.14 TCGA-DS-A1OC-01 20 54579007 54579007 G A CBLN4 Missense_Mutation p.S74L 0.11 deleterious(0) probably_damaging(0.975) TCGA-DS-A1OC-01 20 57268820 57268820 A G NPEPL1 Missense_Mutation p.N60D 0.12 tolerated(0.2) benign(0.018) TCGA-DS-A1OC-01 21 31798115 31798115 T G KRTAP13-3 Missense_Mutation p.D39A 0.16 tolerated(0.07) benign(0.329) TCGA-DS-A1OC-01 21 46012351 46012351 G A KRTAP10-6 Silent p.T5T 0.07 TCGA-DS-A1OC-01 21 46020514 46020514 T - KRTAP10-7 5'UTR 0.41 TCGA-DS-A1OC-01 21 46021489 46021489 G A KRTAP10-7 Missense_Mutation p.R323K 0.13 tolerated(0.26) unknown(0) TCGA-DS-A1OC-01 21 46021491 46021491 C T KRTAP10-7 Missense_Mutation p.P324S 0.10 tolerated(0.12) unknown(0) TCGA-DS-A1OC-01 21 46226840 46226840 G A SUMO3 3'UTR 0.31 TCGA-DS-A1OC-01 21 48019347 48019347 C T S100B Missense_Mutation p.D70N 0.27 tolerated(0.06) benign(0.057) TCGA-DS-A1OC-01 22 18975281 18975281 G A DGCR5 RNA 0.12 TCGA-DS-A1OC-01 22 29755870 29755870 C T AP1B1 Missense_Mutation p.M74I 0.28 tolerated(0.45) benign(0.14) TCGA-DS-A1OC-01 22 30772522 30772522 C T CCDC157 Missense_Mutation p.R683W 0.30 deleterious_low_confidence(0.01) benign(0.002) TCGA-DS-A1OC-01 22 31819365 31819365 G A DRG1 Missense_Mutation p.D228N 0.13 deleterious(0) possibly_damaging(0.845) TCGA-DS-A1OC-01 22 37266516 37266516 C A NCF4 Nonsense_Mutation p.Y134* 0.46 TCGA-DS-A1OC-01 22 38120006 38120006 T C TRIOBP Silent p.C481C 0.26 TCGA-DS-A1OC-01 22 38369886 38369886 G A SOX10 Silent p.G339G 0.34 TCGA-DS-A1OC-01 22 46704589 46704589 A G GTSE1 Missense_Mutation p.S171G 0.25 tolerated(0.06) benign(0.068) TCGA-DS-A1OC-01 2 107040472 107040472 G A RGPD3 Silent p.G1317G 0.36 TCGA-DS-A1OC-01 2 111413329 111413329 A G BUB1 Silent p.I621I 0.26 TCGA-DS-A1OC-01 2 152534209 152534209 T A NEB Missense_Mutation p.K1215I 0.38 probably_damaging(0.961) TCGA-DS-A1OC-01 2 160027260 160027260 G A TANC1 Missense_Mutation p.C432Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OC-01 2 170042231 170042231 C G LRP2 Missense_Mutation p.L3209F 0.22 possibly_damaging(0.835) TCGA-DS-A1OC-01 2 170605976 170605976 G T KLHL23 Missense_Mutation p.V471F 0.45 deleterious(0) probably_damaging(0.964) TCGA-DS-A1OC-01 2 175742609 175742609 C T CHN1 Missense_Mutation p.E170K 0.20 tolerated(0.91) benign(0) TCGA-DS-A1OC-01 2 179238658 179238658 A T OSBPL6 Missense_Mutation p.Q504H 0.23 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OC-01 2 179413904 179413904 C G TTN Missense_Mutation p.E30817Q 0.21 TCGA-DS-A1OC-01 2 179469033 179469033 C G TTN Splice_Site p.X18128_splice 0.19 TCGA-DS-A1OC-01 2 179516201 179516201 G C TTN Missense_Mutation p.P13176A 0.28 TCGA-DS-A1OC-01 2 190530967 190530967 C G ASNSD1 Missense_Mutation p.Q37E 0.21 tolerated(0.12) benign(0.015) TCGA-DS-A1OC-01 2 190531531 190531531 T - ASNSD1 Frame_Shift_Del p.F225Lfs*5 0.10 TCGA-DS-A1OC-01 2 191175495 191175495 G C HIBCH Silent p.T21T 0.16 TCGA-DS-A1OC-01 2 196729155 196729155 A G DNAH7 Silent p.F2408F 0.22 TCGA-DS-A1OC-01 2 197002267 197002267 C G STK17B Missense_Mutation p.E341D 0.17 deleterious(0.03) probably_damaging(0.978) TCGA-DS-A1OC-01 2 202899735 202899735 C G FZD7 Missense_Mutation p.S122C 0.58 deleterious(0) probably_damaging(0.983) TCGA-DS-A1OC-01 2 230723526 230723526 G C TRIP12 Nonsense_Mutation p.S288* 0.62 TCGA-DS-A1OC-01 2 234296801 234296801 G A DGKD Intron 0.14 TCGA-DS-A1OC-01 2 234368410 234368410 C G DGKD Missense_Mutation p.T901R 0.24 deleterious(0.01) benign(0.405) TCGA-DS-A1OC-01 2 242080125 242080125 C T PASK Silent p.Q80Q 0.28 TCGA-DS-A1OC-01 2 27604613 27604613 C T PPM1G Missense_Mutation p.M498I 0.11 deleterious(0.01) possibly_damaging(0.665) TCGA-DS-A1OC-01 2 29084024 29084024 G C TRMT61B Nonsense_Mutation p.S318* 0.20 TCGA-DS-A1OC-01 2 37475547 37475547 G T NDUFAF7 3'UTR 0.19 TCGA-DS-A1OC-01 2 37494578 37494578 A T PRKD3 Missense_Mutation p.L627I 0.46 deleterious(0) probably_damaging(1) TCGA-DS-A1OC-01 2 55470693 55470693 G T MTIF2 Missense_Mutation p.Q475K 0.27 tolerated(0.52) benign(0.001) TCGA-DS-A1OC-01 2 55481288 55481288 T C MTIF2 Missense_Mutation p.I185V 0.42 tolerated(0.35) benign(0.03) TCGA-DS-A1OC-01 2 64321919 64321919 G A PELI1 Missense_Mutation p.H392Y 0.20 deleterious(0.01) possibly_damaging(0.904) TCGA-DS-A1OC-01 2 68765054 68765065 TAATATTAAGAC - APLF In_Frame_Del p.I287_N290del 0.38 TCGA-DS-A1OC-01 2 71827924 71827924 G A DYSF Silent p.Q1283Q 0.42 TCGA-DS-A1OC-01 2 75879347 75879347 G C MRPL19 Missense_Mutation p.E101Q 0.30 tolerated(0.83) benign(0.034) TCGA-DS-A1OC-01 2 97427824 97427824 A T CNNM4 Missense_Mutation p.Q363L 0.31 deleterious(0) benign(0.343) TCGA-DS-A1OC-01 2 97532106 97532106 G C SEMA4C Missense_Mutation p.L58V 0.46 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OC-01 3 121388133 121388133 C T GOLGB1 Missense_Mutation p.E3083K 0.31 probably_damaging(0.925) TCGA-DS-A1OC-01 3 124952316 124952316 T A ZNF148 Missense_Mutation p.E418D 0.26 tolerated(0.25) benign(0.018) TCGA-DS-A1OC-01 3 127395140 127395140 G A ABTB1 Missense_Mutation p.D116N 0.16 deleterious(0) probably_damaging(0.954) TCGA-DS-A1OC-01 3 129170834 129170834 G A IFT122 Silent p.A62A 0.17 TCGA-DS-A1OC-01 3 134322784 134322784 C G KY Missense_Mutation p.K541N 0.14 deleterious(0.01) probably_damaging(0.958) TCGA-DS-A1OC-01 3 138664558 138664558 G T FOXL2 Missense_Mutation p.A336E 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-DS-A1OC-01 3 141464073 141464073 G C RNF7 Missense_Mutation p.C99S 0.50 deleterious(0) probably_damaging(0.986) TCGA-DS-A1OC-01 3 142231288 142231288 G C ATR Missense_Mutation p.L1556V 0.19 tolerated(0.07) possibly_damaging(0.632) TCGA-DS-A1OC-01 3 155628590 155628591 - G GMPS Frame_Shift_Ins p.C213Vfs*13 0.10 TCGA-DS-A1OC-01 3 156009816 156009816 C G KCNAB1 Intron 0.21 TCGA-DS-A1OC-01 3 167083738 167083738 C T ZBBX Missense_Mutation p.G70E 0.14 deleterious(0) probably_damaging(0.993) TCGA-DS-A1OC-01 3 183887805 183887805 C T DVL3 Silent p.L504L 0.13 TCGA-DS-A1OC-01 3 196198875 196198875 C G RNF168 Missense_Mutation p.E511Q 0.05 tolerated(0.28) benign(0.001) TCGA-DS-A1OC-01 3 45151920 45151920 G T CDCP1 Intron 0.38 TCGA-DS-A1OC-01 3 48629532 48629532 C T COL7A1 Intron 0.19 TCGA-DS-A1OC-01 3 49899280 49899280 G A CAMKV Silent p.I82I 0.64 TCGA-DS-A1OC-01 3 52486514 52486514 C T TNNC1 Missense_Mutation p.E14K 0.35 tolerated(0.1) benign(0.025) TCGA-DS-A1OC-01 3 64084967 64084967 C T PRICKLE2 Nonsense_Mutation p.W765* 0.39 TCGA-DS-A1OC-01 4 104101549 104101549 C G CENPE Missense_Mutation p.Q387H 0.17 probably_damaging(0.999) TCGA-DS-A1OC-01 4 110610391 110610391 A C CASP6 3'UTR 0.29 TCGA-DS-A1OC-01 4 152201038 152201038 A G PRSS48 Missense_Mutation p.D48G 0.07 tolerated(1) benign(0) TCGA-DS-A1OC-01 4 152201058 152201058 G T PRSS48 Missense_Mutation p.G55C 0.08 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OC-01 4 154626100 154626100 C T TLR2 Missense_Mutation p.P681S 0.19 deleterious(0) probably_damaging(1) TCGA-DS-A1OC-01 4 186168503 186168503 C T SNX25 5'UTR 0.52 TCGA-DS-A1OC-01 4 25415344 25415344 C T ANAPC4 Nonsense_Mutation p.Q535* 0.33 TCGA-DS-A1OC-01 4 66270136 66270136 T A EPHA5 Silent p.G582G 0.46 TCGA-DS-A1OC-01 4 6642972 6642972 G C MRFAP1 Nonstop_Mutation p.*128Sext*53 0.21 TCGA-DS-A1OC-01 4 76808020 76808020 G T PPEF2 Silent p.I188I 0.16 TCGA-DS-A1OC-01 4 77003066 77003066 C T ART3 Silent p.P53P 0.34 TCGA-DS-A1OC-01 4 8230031 8230031 C T SH3TC1 Silent p.A870A 0.31 TCGA-DS-A1OC-01 5 132222085 132222085 C A AFF4 Nonsense_Mutation p.E1006* 0.29 TCGA-DS-A1OC-01 5 13762983 13762983 C A DNAH5 Nonsense_Mutation p.E3377* 0.24 TCGA-DS-A1OC-01 5 137892546 137892546 C A HSPA9 Nonsense_Mutation p.E580* 0.24 TCGA-DS-A1OC-01 5 140189056 140189056 G A PCDHA4 Missense_Mutation p.E762K 0.30 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-DS-A1OC-01 5 140308814 140308814 C A PCDHAC1 Missense_Mutation p.D779E 0.13 tolerated(0.15) benign(0.039) TCGA-DS-A1OC-01 5 140712442 140712442 G A PCDHGA1 Missense_Mutation p.G731S 0.08 deleterious_low_confidence(0.03) benign(0.052) TCGA-DS-A1OC-01 5 141033632 141033632 G A ARAP3 Missense_Mutation p.S1507F 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-DS-A1OC-01 5 145379773 145379773 C T SH3RF2 Silent p.S177S 0.13 TCGA-DS-A1OC-01 5 176761333 176761333 C G LMAN2 Missense_Mutation p.D288H 0.36 deleterious(0.04) probably_damaging(0.994) TCGA-DS-A1OC-01 5 179306153 179306153 G A TBC1D9B Silent p.F487F 0.62 TCGA-DS-A1OC-01 5 26881211 26881211 C T CDH9 3'UTR 0.20 TCGA-DS-A1OC-01 5 33535065 33535065 C G ADAMTS12 Missense_Mutation p.K1493N 0.60 tolerated(0.07) benign(0.134) TCGA-DS-A1OC-01 5 34830792 34830792 G C RAI14 Splice_Site p.X959_splice 0.19 TCGA-DS-A1OC-01 5 34908893 34908893 C G RAD1 Missense_Mutation p.E276Q 0.24 deleterious(0.02) benign(0.179) TCGA-DS-A1OC-01 5 5209234 5209234 C A ADAMTS16 Missense_Mutation p.Q494K 0.16 tolerated(0.05) benign(0.026) TCGA-DS-A1OC-01 5 7897305 7897305 G T MTRR Missense_Mutation p.G660C 0.45 tolerated(0.16) possibly_damaging(0.868) TCGA-DS-A1OC-01 5 86564614 86564614 C T RASA1 Missense_Mutation p.L116F 0.52 tolerated_low_confidence(0.31) possibly_damaging(0.587) TCGA-DS-A1OC-01 6 151673276 151673276 G T AKAP12 Silent p.V1250V 0.79 TCGA-DS-A1OC-01 6 161159642 161159642 G C PLG Missense_Mutation p.E625D 0.18 tolerated(0.17) benign(0.006) TCGA-DS-A1OC-01 6 25966895 25966895 C G TRIM38 Missense_Mutation p.Q49E 0.15 tolerated(0.35) benign(0.014) TCGA-DS-A1OC-01 6 26027241 26027241 C G HIST1H4B Missense_Mutation p.K80N 0.40 deleterious(0.01) benign(0.329) TCGA-DS-A1OC-01 6 27782998 27782998 T C HIST1H2BM Silent p.A59A 0.06 TCGA-DS-A1OC-01 6 27792246 27792246 C T HIST1H4J 3'UTR 0.12 TCGA-DS-A1OC-01 6 30539290 30539290 C T ABCF1 Missense_Mutation p.P9L 0.15 tolerated_low_confidence(0.05) unknown(0) TCGA-DS-A1OC-01 6 30539323 30539323 G A ABCF1 Missense_Mutation p.S20N 0.10 tolerated_low_confidence(0.38) benign(0.002) TCGA-DS-A1OC-01 6 31118780 31118780 C T CCHCR1 Silent p.L307L 0.14 TCGA-DS-A1OC-01 6 31599878 31599878 G C PRRC2A Missense_Mutation p.G1143A 0.14 unknown(0) TCGA-DS-A1OC-01 6 31600727 31600727 G A PRRC2A Missense_Mutation p.G1426E 0.11 unknown(0) TCGA-DS-A1OC-01 6 31604509 31604509 G A PRRC2A Splice_Site p.X1979_splice 0.05 TCGA-DS-A1OC-01 6 31627050 31627050 G T C6orf47 Missense_Mutation p.F225L 0.19 deleterious(0) probably_damaging(0.995) TCGA-DS-A1OC-01 6 31778076 31778076 T C HSPA1L Silent p.E558E 0.11 TCGA-DS-A1OC-01 6 31778394 31778394 T C HSPA1L Silent p.T452T 0.07 TCGA-DS-A1OC-01 6 31778583 31778583 C G HSPA1L Missense_Mutation p.K389N 0.10 tolerated_low_confidence(0.39) benign(0.008) TCGA-DS-A1OC-01 6 31778994 31778994 T C HSPA1L Silent p.K252K 0.07 TCGA-DS-A1OC-01 6 31779365 31779365 A T HSPA1L Missense_Mutation p.L129M 0.11 tolerated_low_confidence(1) benign(0.002) TCGA-DS-A1OC-01 6 31779369 31779369 A G HSPA1L Silent p.T127T 0.10 TCGA-DS-A1OC-01 6 31779591 31779591 A G HSPA1L Silent p.I53I 0.10 TCGA-DS-A1OC-01 6 31779609 31779609 T C HSPA1L Silent p.T47T 0.12 TCGA-DS-A1OC-01 6 31779678 31779678 C T HSPA1L Silent p.Q24Q 0.15 TCGA-DS-A1OC-01 6 31779693 31779693 A G HSPA1L Silent p.C19C 0.17 TCGA-DS-A1OC-01 6 31783584 31783584 C T HSPA1A Silent p.C17C 0.14 TCGA-DS-A1OC-01 6 31783599 31783599 A G HSPA1A Silent p.Q22Q 0.17 TCGA-DS-A1OC-01 6 31783668 31783668 G A HSPA1A Silent p.T45T 0.41 TCGA-DS-A1OC-01 6 31783686 31783686 C T HSPA1A Silent p.I51I 0.36 TCGA-DS-A1OC-01 6 33402933 33402933 C T SYNGAP1 Missense_Mutation p.R172W 0.50 deleterious(0.02) benign(0.053) TCGA-DS-A1OC-01 6 34214592 34214592 A G C6orf1 Missense_Mutation p.M60T 0.61 tolerated_low_confidence(0.55) benign(0.001) TCGA-DS-A1OC-01 6 37447794 37447794 G C CMTR1 Missense_Mutation p.C794S 0.11 deleterious(0.04) probably_damaging(0.957) TCGA-DS-A1OC-01 6 39040637 39040637 G A GLP1R Splice_Site p.X170_splice 0.40 TCGA-DS-A1OC-01 6 39040638 39040638 A C GLP1R Missense_Mutation p.R170S 0.42 tolerated(0.71) possibly_damaging(0.744) TCGA-DS-A1OC-01 6 41185640 41185640 A G TREML3P RNA 0.09 TCGA-DS-A1OC-01 6 41185673 41185673 A G TREML3P RNA 0.07 TCGA-DS-A1OC-01 6 41185687 41185687 T G TREML3P Intron 0.07 TCGA-DS-A1OC-01 6 41196530 41196530 C T TREML4 Missense_Mutation p.P48S 0.11 tolerated(0.12) possibly_damaging(0.53) TCGA-DS-A1OC-01 6 48036193 48036193 C T PTCHD4 Missense_Mutation p.E67K 0.47 deleterious(0) benign(0.053) TCGA-DS-A1OC-01 6 64395831 64395831 A G PHF3 Intron 0.22 TCGA-DS-A1OC-01 7 102087396 102087396 C G ORAI2 Missense_Mutation p.S221C 0.36 deleterious(0) possibly_damaging(0.89) TCGA-DS-A1OC-01 7 127670234 127670234 G A LRRC4 Missense_Mutation p.L154F 0.24 deleterious(0) probably_damaging(1) TCGA-DS-A1OC-01 7 128142071 128142071 C T METTL2B 3'UTR 0.15 TCGA-DS-A1OC-01 7 143826553 143826553 G T OR2A14 Silent p.V116V 0.08 TCGA-DS-A1OC-01 7 143826554 143826554 A T OR2A14 Missense_Mutation p.M117L 0.09 deleterious(0.02) possibly_damaging(0.484) TCGA-DS-A1OC-01 7 150439470 150439470 T C GIMAP5 Silent p.V81V 0.10 TCGA-DS-A1OC-01 7 156755857 156755857 G C NOM1 Missense_Mutation p.Q633H 0.64 tolerated(0.16) possibly_damaging(0.629) TCGA-DS-A1OC-01 7 1590520 1590520 G A TMEM184A Silent p.L106L 0.42 TCGA-DS-A1OC-01 7 45025088 45025088 C A SNHG15 RNA 0.37 TCGA-DS-A1OC-01 7 48288891 48288891 A T ABCA13 Missense_Mutation p.T650S 0.40 possibly_damaging(0.744) TCGA-DS-A1OC-01 7 74564125 74564125 G C GTF2IRD2B Missense_Mutation p.M624I 0.30 deleterious(0.01) possibly_damaging(0.885) TCGA-DS-A1OC-01 7 76828947 76828947 C A FGL2 Missense_Mutation p.C55F 0.12 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OC-01 7 82584480 82584480 G T PCLO Missense_Mutation p.A1930D 0.48 unknown(0) TCGA-DS-A1OC-01 7 92085930 92085930 C T GATAD1 3'UTR 0.41 TCGA-DS-A1OC-01 8 117954967 117954967 C T AARD 3'UTR 0.11 TCGA-DS-A1OC-01 8 120977640 120977640 C T DEPTOR Silent p.I198I 0.19 TCGA-DS-A1OC-01 8 121313001 121313001 C T COL14A1 Missense_Mutation p.H1449Y 0.13 deleterious(0.01) benign(0.285) TCGA-DS-A1OC-01 8 122641224 122641224 G C HAS2 Silent p.V119V 0.16 TCGA-DS-A1OC-01 8 12947948 12947948 G T DLC1 Missense_Mutation p.S1296Y 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-DS-A1OC-01 8 56854438 56854438 A T LYN Missense_Mutation p.K7I 0.29 deleterious(0.01) benign(0.015) TCGA-DS-A1OC-01 8 67591973 67591973 G C C8orf44 Silent p.L88L 0.24 TCGA-DS-A1OC-01 8 70964215 70964215 C G PRDM14 3'UTR 0.25 TCGA-DS-A1OC-01 8 92346541 92346541 G C SLC26A7 Missense_Mutation p.E221Q 0.25 tolerated(0.09) possibly_damaging(0.628) TCGA-DS-A1OC-01 9 106874063 106874063 G C SMC2 Missense_Mutation p.D408H 0.43 deleterious(0.02) benign(0.039) TCGA-DS-A1OC-01 9 124975947 124975947 T C LHX6 Missense_Mutation p.H331R 0.28 tolerated(0.66) possibly_damaging(0.49) TCGA-DS-A1OC-01 9 125391689 125391689 C G OR1B1 Silent p.L42L 0.12 TCGA-DS-A1OC-01 9 130416009 130416009 C T STXBP1 Nonsense_Mutation p.Q35* 0.28 TCGA-DS-A1OC-01 9 130494381 130494381 C T TOR2A Missense_Mutation p.E300K 0.38 tolerated(1) benign(0.093) TCGA-DS-A1OC-01 9 131190594 131190594 C T CERCAM Silent p.H260H 0.30 TCGA-DS-A1OC-01 9 134103621 134103621 G C NUP214 Missense_Mutation p.A1993P 0.25 probably_damaging(0.934) TCGA-DS-A1OC-01 9 135985721 135985721 G A RALGDS Silent p.F150F 0.36 TCGA-DS-A1OC-01 9 139276405 139276405 G A SNAPC4 Missense_Mutation p.R730C 0.12 deleterious(0) possibly_damaging(0.794) TCGA-DS-A1OC-01 9 139276445 139276445 C G SNAPC4 Silent p.V716V 0.23 TCGA-DS-A1OC-01 9 140005053 140005053 G A DPP7 3'UTR 0.42 TCGA-DS-A1OC-01 9 140138185 140138185 C G FAM166A Missense_Mutation p.W307C 0.32 deleterious(0) benign(0.416) TCGA-DS-A1OC-01 9 34977167 34977167 G C KIAA1045 Missense_Mutation p.E313Q 0.14 tolerated(0.18) possibly_damaging(0.686) TCGA-DS-A1OC-01 9 35068292 35068292 C G VCP Missense_Mutation p.D29H 0.61 deleterious(0) possibly_damaging(0.892) TCGA-DS-A1OC-01 9 35812129 35812129 A G SPAG8 Missense_Mutation p.S6P 0.52 deleterious_low_confidence(0.04) unknown(0) TCGA-DS-A1OC-01 9 74587894 74587894 C T C9orf85 3'UTR 0.32 TCGA-DS-A1OC-01 9 86530261 86530261 G C KIF27 Silent p.A82A 0.23 TCGA-DS-A1OC-01 9 95077986 95077986 T C NOL8 Silent p.E307E 0.41 TCGA-DS-A1OC-01 X 101382150 101382150 A G TCEAL2 Silent p.G116G 0.36 TCGA-DS-A1OC-01 X 111155738 111155738 G C TRPC5 Silent p.L227L 0.16 TCGA-DS-A1OC-01 X 117575391 117575391 G A WDR44 Missense_Mutation p.D679N 0.25 deleterious(0) probably_damaging(0.954) TCGA-DS-A1OC-01 X 117819686 117819686 G A DOCK11 Missense_Mutation p.M2046I 0.22 tolerated(0.27) benign(0) TCGA-DS-A1OC-01 X 117875043 117875043 C - IL13RA1 Frame_Shift_Del p.T51Nfs*28 0.13 TCGA-DS-A1OC-01 X 118750567 118750567 A G SEPT6 3'Flank 0.21 TCGA-DS-A1OC-01 X 120009295 120009295 T C CT47B1 Missense_Mutation p.Q77R 0.10 tolerated(0.48) benign(0) TCGA-DS-A1OC-01 X 12712462 12712462 G C FRMPD4 Missense_Mutation p.Q274H 0.08 tolerated(0.06) probably_damaging(0.99) TCGA-DS-A1OC-01 X 134186034 134186034 T G FAM127B Silent p.G35G 0.10 TCGA-DS-A1OC-01 X 134428144 134428144 C G ZNF75D 5'UTR 0.14 TCGA-DS-A1OC-01 X 135427881 135427881 C A GPR112 Silent p.T672T 0.09 TCGA-DS-A1OC-01 X 13771476 13771476 C G OFD1 Intron 0.24 TCGA-DS-A1OC-01 X 139586071 139586071 G A SOX3 Silent p.I385I 0.40 TCGA-DS-A1OC-01 X 1428369 1428369 C A CSF2RA Silent p.T434T 0.52 TCGA-DS-A1OC-01 X 147743790 147743790 T C AFF2 Missense_Mutation p.M181T 0.29 tolerated(0.64) benign(0.001) TCGA-DS-A1OC-01 X 150869543 150869543 T A PRRG3 3'UTR 0.32 TCGA-DS-A1OC-01 X 151896211 151896211 T C MAGEA12 3'Flank 0.48 TCGA-DS-A1OC-01 X 151896346 151896346 C G MAGEA12 3'Flank 0.08 TCGA-DS-A1OC-01 X 151896643 151896643 C G MAGEA12 3'Flank 0.07 TCGA-DS-A1OC-01 X 151900476 151900476 G T MAGEA12 Missense_Mutation p.L109I 0.08 tolerated(0.23) benign(0.042) TCGA-DS-A1OC-01 X 151900728 151900728 A G MAGEA12 Silent p.L25L 0.12 TCGA-DS-A1OC-01 X 151900745 151900745 T C MAGEA12 Missense_Mutation p.Q19R 0.13 tolerated(0.16) benign(0.007) TCGA-DS-A1OC-01 X 151900762 151900762 C T MAGEA12 Silent p.E13E 0.10 TCGA-DS-A1OC-01 X 153609512 153609512 C A EMD Missense_Mutation p.F240L 0.44 tolerated(1) benign(0) TCGA-DS-A1OC-01 X 18622667 18622667 G C CDKL5 Missense_Mutation p.L541F 0.14 deleterious_low_confidence(0.05) possibly_damaging(0.587) TCGA-DS-A1OC-01 X 24089770 24089770 G A EIF2S3 Missense_Mutation p.E370K 0.24 tolerated(0.09) benign(0.031) TCGA-DS-A1OC-01 X 24228686 24228686 C T ZFX Silent p.H537H 0.21 TCGA-DS-A1OC-01 X 25033657 25033657 A G ARX Splice_Site p.X66_splice 0.33 TCGA-DS-A1OC-01 X 29686583 29686583 C T IL1RAPL1 Missense_Mutation p.P247L 0.15 deleterious(0) possibly_damaging(0.516) TCGA-DS-A1OC-01 X 37028641 37028641 G C FAM47C Missense_Mutation p.E720Q 0.30 tolerated(0.13) benign(0.113) TCGA-DS-A1OC-01 X 37028848 37028848 G C FAM47C Missense_Mutation p.E789Q 0.40 tolerated(0.09) benign(0.387) TCGA-DS-A1OC-01 X 37029376 37029376 G C FAM47C Missense_Mutation p.E965Q 0.21 tolerated(0.05) possibly_damaging(0.857) TCGA-DS-A1OC-01 X 43603807 43603807 G A MAOA 3'UTR 0.52 TCGA-DS-A1OC-01 X 48163730 48163730 T - SSX9 RNA 0.27 TCGA-DS-A1OC-01 X 48759680 48759680 C A PQBP1 Silent p.R155R 0.11 TCGA-DS-A1OC-01 X 52677383 52677383 A G SSX7 Missense_Mutation p.S132P 0.07 tolerated(1) benign(0) TCGA-DS-A1OC-01 X 53577667 53577667 C G HUWE1 Missense_Mutation p.G3150R 0.37 probably_damaging(0.953) TCGA-DS-A1OC-01 X 5821894 5821894 C T NLGN4X Silent p.K275K 0.16 TCGA-DS-A1OC-01 X 591655 591655 T A SHOX Missense_Mutation p.V8E 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DS-A1OC-01 X 62570307 62570307 T G SPIN4 Missense_Mutation p.H131P 0.14 deleterious(0.05) benign(0.425) TCGA-DS-A1OC-01 X 6451726 6451726 G T VCX3A 3'UTR 0.29 TCGA-DS-A1OC-01 X 68382865 68382865 A C PJA1 Missense_Mutation p.S73A 0.37 tolerated(0.48) benign(0.002) TCGA-DS-A1OC-01 X 68836505 68836505 C T EDA Missense_Mutation p.P118L 0.18 tolerated_low_confidence(0.1) unknown(0) TCGA-DS-A1OD-01 10 104536151 104536151 C T WBP1L Intron 0.22 TCGA-DS-A1OD-01 10 105363441 105363441 G A SH3PXD2A Missense_Mutation p.R484C 0.13 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OD-01 10 116059091 116059094 CTTC - AFAP1L2 Frame_Shift_Del p.E680Kfs*16 0.22 TCGA-DS-A1OD-01 10 5011017 5011017 G A AKR1C1 Missense_Mutation p.V151M 0.09 tolerated(0.83) benign(0.001) TCGA-DS-A1OD-01 10 5020085 5020085 A G AKR1C1 3'UTR 0.30 TCGA-DS-A1OD-01 10 5020090 5020090 G A AKR1C1 3'UTR 0.19 TCGA-DS-A1OD-01 10 5032032 5032032 T C AKR1C2 3'UTR 0.11 TCGA-DS-A1OD-01 10 5032163 5032163 C T AKR1C2 3'UTR 0.10 TCGA-DS-A1OD-01 10 51767796 51767796 G C AGAP6 Missense_Mutation p.R182T 0.11 tolerated_low_confidence(0.58) benign(0.077) TCGA-DS-A1OD-01 10 68688049 68688049 C G LRRTM3 Missense_Mutation p.R459G 0.12 tolerated(0.15) benign(0.241) TCGA-DS-A1OD-01 11 122828191 122828191 C T C11orf63 Missense_Mutation p.R711W 0.12 deleterious(0) probably_damaging(1) TCGA-DS-A1OD-01 11 123900965 123900965 G C OR10G8 Silent p.L212L 0.08 TCGA-DS-A1OD-01 11 123901211 123901211 G A OR10G8 Silent p.V294V 0.07 TCGA-DS-A1OD-01 11 123908827 123908827 T C OR10G7 Silent p.V294V 0.15 TCGA-DS-A1OD-01 11 123908839 123908839 T C OR10G7 Silent p.R290R 0.11 TCGA-DS-A1OD-01 11 123909011 123909011 C T OR10G7 Missense_Mutation p.R233K 0.09 deleterious(0.01) benign(0.232) TCGA-DS-A1OD-01 11 1642784 1642784 G A KRTAP5-4 Silent p.C180C 0.12 TCGA-DS-A1OD-01 11 1642880 1642880 A G KRTAP5-4 Silent p.S148S 0.14 TCGA-DS-A1OD-01 11 1643182 1643182 T C KRTAP5-4 Missense_Mutation p.S48G 0.06 deleterious_low_confidence(0) unknown(0) TCGA-DS-A1OD-01 11 1643275 1643275 A G KRTAP5-4 Missense_Mutation p.C17R 0.08 deleterious_low_confidence(0) unknown(0) TCGA-DS-A1OD-01 11 17111209 17111210 - TGTGTGTGTGTGTGTC PIK3C2A 3'UTR 0.24 TCGA-DS-A1OD-01 11 18266888 18266888 T C SAA2 3'UTR 0.09 TCGA-DS-A1OD-01 11 309100 309100 T C IFITM2 Silent p.L112L 0.21 TCGA-DS-A1OD-01 11 309109 309109 T C IFITM2 Missense_Mutation p.F115L 0.19 tolerated(1) benign(0.001) TCGA-DS-A1OD-01 11 309201 309201 G A IFITM2 3'UTR 0.10 TCGA-DS-A1OD-01 11 309223 309223 T C IFITM2 3'UTR 0.11 TCGA-DS-A1OD-01 11 309225 309225 T A IFITM2 3'UTR 0.11 TCGA-DS-A1OD-01 11 314253 314253 A G IFITM1 Missense_Mutation p.H28R 0.09 tolerated(1) benign(0.006) TCGA-DS-A1OD-01 11 315009 315009 C T IFITM1 Silent p.L92L 0.11 TCGA-DS-A1OD-01 11 315018 315018 C T IFITM1 Missense_Mutation p.L95F 0.10 tolerated(0.18) benign(0.037) TCGA-DS-A1OD-01 11 319780 319780 G A IFITM3 3'UTR 0.10 TCGA-DS-A1OD-01 11 320888 320888 T C IFITM3 5'UTR 0.16 TCGA-DS-A1OD-01 11 33363151 33363151 C - HIPK3 Frame_Shift_Del p.P606Lfs*19 0.08 TCGA-DS-A1OD-01 11 56237865 56237865 T C OR5M3 Missense_Mutation p.M37V 0.10 tolerated(0.91) benign(0) TCGA-DS-A1OD-01 11 56237917 56237917 T C OR5M3 Silent p.R19R 0.12 TCGA-DS-A1OD-01 11 57971456 57971456 T C OR1S2 Missense_Mutation p.I66M 0.10 deleterious(0.01) benign(0.002) TCGA-DS-A1OD-01 11 57971457 57971457 A G OR1S2 Missense_Mutation p.I66T 0.10 tolerated(0.21) benign(0) TCGA-DS-A1OD-01 11 57971509 57971509 C G OR1S2 Missense_Mutation p.V49L 0.08 tolerated(1) benign(0) TCGA-DS-A1OD-01 11 57971604 57971604 T C OR1S2 Missense_Mutation p.E17G 0.10 tolerated(0.54) benign(0) TCGA-DS-A1OD-01 11 57982247 57982247 G A OR1S1 Missense_Mutation p.G11S 0.09 tolerated(1) benign(0) TCGA-DS-A1OD-01 11 57982266 57982266 G A OR1S1 Missense_Mutation p.G17E 0.10 tolerated(0.99) benign(0.02) TCGA-DS-A1OD-01 11 57982648 57982648 T C OR1S1 Silent p.N144N 0.09 TCGA-DS-A1OD-01 11 57982903 57982903 T C OR1S1 Silent p.F229F 0.10 TCGA-DS-A1OD-01 11 65350689 65350689 C T EHBP1L1 Missense_Mutation p.S849L 0.17 deleterious(0.04) benign(0.004) TCGA-DS-A1OD-01 11 6806660 6806660 C A OR2AG1 Missense_Mutation p.T131K 0.07 tolerated(0.13) benign(0.001) TCGA-DS-A1OD-01 11 71277147 71277161 TGCTGTGTCCCCGTG - KRTAP5-10 In_Frame_Del p.V174_C178del 0.12 TCGA-DS-A1OD-01 11 71293458 71293458 G A KRTAP5-11 Silent p.C142C 0.06 TCGA-DS-A1OD-01 11 71293474 71293474 A C KRTAP5-11 Missense_Mutation p.F137C 0.10 tolerated_low_confidence(1) unknown(0) TCGA-DS-A1OD-01 11 71293670 71293670 T C KRTAP5-11 Missense_Mutation p.S72G 0.13 tolerated_low_confidence(0.18) unknown(0) TCGA-DS-A1OD-01 11 71293848 71293848 A G KRTAP5-11 Silent p.S12S 0.14 TCGA-DS-A1OD-01 12 102796227 102796227 G A IGF1 3'UTR 0.08 TCGA-DS-A1OD-01 12 48174625 48174625 T C SLC48A1 3'UTR 0.25 TCGA-DS-A1OD-01 12 52681014 52681014 G A KRT81 Silent p.G373G 0.13 TCGA-DS-A1OD-01 12 52710279 52710279 T C KRT83 Silent p.T338T 0.13 TCGA-DS-A1OD-01 12 52710357 52710357 T C KRT83 Silent p.T312T 0.13 TCGA-DS-A1OD-01 12 53552163 53552163 A G CSAD 3'UTR 0.22 TCGA-DS-A1OD-01 12 53552171 53552171 C T CSAD 3'UTR 0.14 TCGA-DS-A1OD-01 12 54912749 54912749 G A NCKAP1L Missense_Mutation p.R491H 0.26 deleterious(0) probably_damaging(0.997) TCGA-DS-A1OD-01 12 55688546 55688546 T A OR6C6 Silent p.P157P 0.09 TCGA-DS-A1OD-01 12 55688547 55688547 G A OR6C6 Missense_Mutation p.P157L 0.09 deleterious_low_confidence(0.05) benign(0.248) TCGA-DS-A1OD-01 12 56215619 56215619 A G DNAJC14 3'UTR 0.33 TCGA-DS-A1OD-01 12 6981745 6981745 G A SPSB2 Silent p.G107G 0.08 TCGA-DS-A1OD-01 12 89992368 89992369 - ACCCCACACACACACCACATACCACACACACCACACATATACACACACTACAT ATP2B1 Intron 0.09 TCGA-DS-A1OD-01 13 25744294 25744294 G C AMER2 Silent p.V488V 0.14 TCGA-DS-A1OD-01 13 58208141 58208141 G A PCDH17 Silent p.P487P 0.31 TCGA-DS-A1OD-01 13 67802144 67802144 T C PCDH9 Silent p.P143P 0.18 TCGA-DS-A1OD-01 14 102549230 102549230 G A HSP90AA1 Intron 0.29 TCGA-DS-A1OD-01 14 21928493 21928494 - C RAB2B 3'UTR 0.20 TCGA-DS-A1OD-01 14 21928572 21928572 T C RAB2B 3'UTR 0.33 TCGA-DS-A1OD-01 14 35482670 35482670 G T SRP54 Missense_Mutation p.G252V 0.29 deleterious(0) probably_damaging(0.993) TCGA-DS-A1OD-01 14 69522018 69522018 G A DCAF5 Missense_Mutation p.S462L 0.11 deleterious(0) benign(0.148) TCGA-DS-A1OD-01 14 91044553 91044553 C T TTC7B Missense_Mutation p.R736H 0.10 deleterious(0) possibly_damaging(0.875) TCGA-DS-A1OD-01 14 95669620 95669620 C T CLMN Missense_Mutation p.S689N 0.15 tolerated(1) benign(0.001) TCGA-DS-A1OD-01 15 69715360 69715360 G A KIF23 Intron 0.29 TCGA-DS-A1OD-01 15 69715361 69715361 T C KIF23 Intron 0.50 TCGA-DS-A1OD-01 15 72546854 72546856 TTC - PARP6 In_Frame_Del p.K377del 0.18 TCGA-DS-A1OD-01 15 89744071 89744072 - G ABHD2 3'UTR 0.23 TCGA-DS-A1OD-01 16 20857563 20857563 G A AC004381.6 Silent p.P715P 0.17 TCGA-DS-A1OD-01 16 21123040 21123040 G A DNAH3 Missense_Mutation p.T669M 0.20 tolerated(0.15) benign(0.001) TCGA-DS-A1OD-01 16 23702055 23702055 T C ERN2 3'UTR 0.18 TCGA-DS-A1OD-01 16 2373384 2373384 C T ABCA3 Intron 0.37 TCGA-DS-A1OD-01 16 3063600 3063600 C T CLDN9 Silent p.A79A 0.08 TCGA-DS-A1OD-01 16 3063630 3063630 G T CLDN9 Silent p.L89L 0.08 TCGA-DS-A1OD-01 16 3063631 3063631 C G CLDN9 Missense_Mutation p.L90V 0.08 tolerated(0.7) benign(0.005) TCGA-DS-A1OD-01 16 3063859 3063859 C T CLDN9 Silent p.L166L 0.08 TCGA-DS-A1OD-01 16 30779676 30779676 C T RNF40 Missense_Mutation p.R602W 0.35 tolerated(0.05) benign(0.001) TCGA-DS-A1OD-01 16 48258336 48258336 G A ABCC11 Missense_Mutation p.H134Y 0.14 tolerated(0.08) benign(0.004) TCGA-DS-A1OD-01 16 56704421 56704421 G T MT1H Missense_Mutation p.G11V 0.10 deleterious(0.02) unknown(0) TCGA-DS-A1OD-01 16 56704962 56704962 T G MT1H 3'UTR 0.52 TCGA-DS-A1OD-01 16 57713095 57713095 C T GPR97 Missense_Mutation p.R167W 0.11 deleterious(0.04) benign(0.003) TCGA-DS-A1OD-01 17 26107895 26107895 C T NOS2 Missense_Mutation p.R301H 0.29 deleterious(0) possibly_damaging(0.904) TCGA-DS-A1OD-01 17 28434977 28434977 T - EFCAB5 Frame_Shift_Del p.L1483Cfs*25 0.26 TCGA-DS-A1OD-01 17 36214775 36214775 G T YWHAEP7 RNA 0.92 TCGA-DS-A1OD-01 17 38557114 38557116 TTC - TOP2A In_Frame_Del p.E884del 0.25 TCGA-DS-A1OD-01 17 39254298 39254298 T C KRTAP4-8 Silent p.Q13Q 0.07 TCGA-DS-A1OD-01 17 7213030 7213030 C T EIF5A Missense_Mutation p.R56C 0.10 deleterious(0.05) benign(0.105) TCGA-DS-A1OD-01 17 76046915 76046915 C G TNRC6C Missense_Mutation p.A591G 0.10 tolerated(1) benign(0.007) TCGA-DS-A1OD-01 17 76212066 76212066 T C BIRC5 Missense_Mutation p.Y81H 0.22 tolerated_low_confidence(0.28) benign(0) TCGA-DS-A1OD-01 18 2707601 2707601 G C SMCHD1 Missense_Mutation p.E702Q 0.14 tolerated(0.24) probably_damaging(0.931) TCGA-DS-A1OD-01 19 12986774 12986774 T G DNASE2 3'UTR 0.17 TCGA-DS-A1OD-01 19 15918656 15918656 G A OR10H1 Silent p.C64C 0.09 TCGA-DS-A1OD-01 19 20117138 20117138 G A ZNF682 Silent p.H391H 0.15 TCGA-DS-A1OD-01 19 21476519 21476519 T C ZNF708 Missense_Mutation p.K417E 0.10 tolerated(1) benign(0) TCGA-DS-A1OD-01 19 36352022 36352022 A G KIRREL2 Splice_Site p.X353_splice 0.18 TCGA-DS-A1OD-01 19 40196420 40196420 T G LGALS14 5'UTR 0.33 TCGA-DS-A1OD-01 19 43864488 43864488 A G CD177 3'UTR 0.09 TCGA-DS-A1OD-01 19 44778319 44778319 T C ZNF233 Silent p.H502H 0.10 TCGA-DS-A1OD-01 19 45916800 45916800 T C ERCC1 3'UTR 0.18 TCGA-DS-A1OD-01 19 46444090 46444090 C T NOVA2 Silent p.P170P 0.11 TCGA-DS-A1OD-01 19 50461721 50461721 C A SIGLEC11 Silent p.G490G 0.11 TCGA-DS-A1OD-01 19 53453272 53453272 C T ZNF816 Missense_Mutation p.V586I 0.12 tolerated(1) benign(0.023) TCGA-DS-A1OD-01 19 53886652 53886652 G C ZNF525 3'UTR 0.26 TCGA-DS-A1OD-01 19 56704097 56704097 C T ZSCAN5B Missense_Mutation p.V109M 0.15 deleterious(0) probably_damaging(1) TCGA-DS-A1OD-01 19 56704100 56704100 C T ZSCAN5B Missense_Mutation p.G108S 0.14 deleterious(0.04) benign(0.161) TCGA-DS-A1OD-01 19 56733189 56733189 C T ZSCAN5A Missense_Mutation p.V416I 0.11 tolerated(0.88) benign(0.009) TCGA-DS-A1OD-01 19 56733438 56733438 T C ZSCAN5A Missense_Mutation p.I333V 0.08 tolerated(1) benign(0.001) TCGA-DS-A1OD-01 19 56733967 56733967 C G ZSCAN5A Missense_Mutation p.K244N 0.06 tolerated(0.27) benign(0.001) TCGA-DS-A1OD-01 19 58370077 58370077 C G CTD-2583A14.10 Silent p.L99L 0.13 TCGA-DS-A1OD-01 1 10477062 10477062 G A PGD Missense_Mutation p.R288Q 0.11 deleterious(0.04) probably_damaging(0.948) TCGA-DS-A1OD-01 1 115142942 115142942 C T DENND2C Missense_Mutation p.R663Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-DS-A1OD-01 1 116243931 116243931 T A CASQ2 Missense_Mutation p.E377D 0.12 tolerated(0.36) unknown(0) TCGA-DS-A1OD-01 1 149858563 149858563 C T HIST2H2AC Silent p.A13A 0.10 TCGA-DS-A1OD-01 1 149859383 149859383 C T HIST2H2AB Silent p.V28V 0.09 TCGA-DS-A1OD-01 1 152082680 152082680 T C TCHH Missense_Mutation p.R1005G 0.10 unknown(0) TCGA-DS-A1OD-01 1 152324407 152324407 C G FLG2 Missense_Mutation p.G1952A 0.12 possibly_damaging(0.563) TCGA-DS-A1OD-01 1 152327211 152327211 A T FLG2 Silent p.S1017S 0.09 TCGA-DS-A1OD-01 1 159805076 159805076 C G SLAMF8 3'UTR 0.50 TCGA-DS-A1OD-01 1 16255140 16255140 T - SPEN Frame_Shift_Del p.V802Gfs*7 0.08 TCGA-DS-A1OD-01 1 197071244 197071244 C T ASPM Silent p.Q2379Q 0.11 TCGA-DS-A1OD-01 1 236399446 236399446 T C ERO1LB Intron 0.12 TCGA-DS-A1OD-01 1 24130718 24130718 A G HMGCL Intron 0.16 TCGA-DS-A1OD-01 1 24130735 24130735 A G HMGCL Intron 0.24 TCGA-DS-A1OD-01 1 245848883 245848883 C G KIF26B Missense_Mutation p.I866M 0.12 deleterious(0) unknown(0) TCGA-DS-A1OD-01 1 247263662 247263662 A T ZNF669 3'UTR 0.33 TCGA-DS-A1OD-01 1 2493113 2493114 - GCA TNFRSF14 In_Frame_Ins p.S186dup 0.32 TCGA-DS-A1OD-01 1 25633201 25633201 G A RHD Missense_Mutation p.V352I 0.18 tolerated(0.27) benign(0.003) TCGA-DS-A1OD-01 1 25701870 25701870 C T RHCE Missense_Mutation p.V375M 0.13 deleterious(0.02) possibly_damaging(0.511) TCGA-DS-A1OD-01 1 32696845 32696845 C G EIF3I 3'UTR 0.38 TCGA-DS-A1OD-01 1 46740246 46740246 G A RAD54L Missense_Mutation p.G576R 0.14 deleterious(0) probably_damaging(1) TCGA-DS-A1OD-01 1 55075036 55075036 A G FAM151A Silent p.L555L 0.14 TCGA-DS-A1OD-01 1 87380807 87380807 C G HS2ST1 Missense_Mutation p.Q30E 0.22 tolerated(0.14) benign(0.027) TCGA-DS-A1OD-01 1 90058659 90058659 C T LRRC8B 3'UTR 0.10 TCGA-DS-A1OD-01 20 48467327 48467327 T G SLC9A8 Missense_Mutation p.F188C 0.09 tolerated_low_confidence(0.17) possibly_damaging(0.878) TCGA-DS-A1OD-01 20 62591254 62591254 G A ZNF512B Missense_Mutation p.A889V 0.11 tolerated_low_confidence(0.41) benign(0.054) TCGA-DS-A1OD-01 20 62705660 62705660 C T RGS19 Missense_Mutation p.G100E 0.30 deleterious(0) probably_damaging(1) TCGA-DS-A1OD-01 21 31798133 31798133 T C KRTAP13-3 Missense_Mutation p.N33S 0.16 deleterious(0.04) possibly_damaging(0.817) TCGA-DS-A1OD-01 21 46000034 46000034 C G KRTAP10-5 Missense_Mutation p.C141S 0.11 deleterious(0.04) unknown(0) TCGA-DS-A1OD-01 21 46020514 46020514 T - KRTAP10-7 5'UTR 0.27 TCGA-DS-A1OD-01 21 46021391 46021391 T A KRTAP10-7 Missense_Mutation p.S290R 0.09 deleterious(0.01) unknown(0) TCGA-DS-A1OD-01 22 18975281 18975281 G A DGCR5 RNA 0.14 TCGA-DS-A1OD-01 22 29754808 29754808 G A AP1B1 Silent p.C144C 0.20 TCGA-DS-A1OD-01 22 36892230 36892230 C A FOXRED2 Nonsense_Mutation p.E470* 0.11 TCGA-DS-A1OD-01 2 109086210 109086210 G A GCC2 Missense_Mutation p.R142H 0.11 tolerated(0.83) benign(0) TCGA-DS-A1OD-01 2 198571355 198571355 G A MARS2 Missense_Mutation p.R409Q 0.30 deleterious(0) probably_damaging(1) TCGA-DS-A1OD-01 2 202342850 202342850 T C STRADB Missense_Mutation p.V254A 0.13 deleterious(0) probably_damaging(0.97) TCGA-DS-A1OD-01 2 210880950 210880950 A G RPE Intron 0.17 TCGA-DS-A1OD-01 2 220101768 220101768 A G GLB1L 3'UTR 0.20 TCGA-DS-A1OD-01 2 37076668 37076668 T C STRN Silent p.V758V 0.22 TCGA-DS-A1OD-01 2 42991307 42991307 G A OXER1 Missense_Mutation p.R5C 0.16 tolerated_low_confidence(0.24) benign(0) TCGA-DS-A1OD-01 2 44021687 44021688 - CAAGCCACAAAAAGCCATGTAGA DYNC2LI1 Frame_Shift_Ins p.V138Afs*9 0.15 TCGA-DS-A1OD-01 3 136699201 136699201 T C IL20RB Intron 0.19 TCGA-DS-A1OD-01 3 38888327 38888327 C T SCN11A Missense_Mutation p.R1745Q 0.09 deleterious(0) probably_damaging(0.997) TCGA-DS-A1OD-01 3 47958144 47958144 A G MAP4 Silent p.A391A 0.08 TCGA-DS-A1OD-01 3 49749980 49749980 A C RNF123 Silent p.T855T 0.18 TCGA-DS-A1OD-01 3 49749981 49749981 G T RNF123 Missense_Mutation p.G856W 0.18 deleterious(0) probably_damaging(0.996) TCGA-DS-A1OD-01 4 119745847 119745847 G A SEC24D Missense_Mutation p.P59L 0.13 tolerated_low_confidence(0.19) benign(0) TCGA-DS-A1OD-01 4 152201036 152201036 T G PRSS48 Missense_Mutation p.F47L 0.07 tolerated(0.77) benign(0.002) TCGA-DS-A1OD-01 4 152201038 152201038 A G PRSS48 Missense_Mutation p.D48G 0.07 tolerated(1) benign(0) TCGA-DS-A1OD-01 4 436174 436174 T C ZNF721 Silent p.E694E 0.32 TCGA-DS-A1OD-01 4 68784830 68784830 G A TMPRSS11A Silent p.Y274Y 0.10 TCGA-DS-A1OD-01 4 71588245 71588245 A T RUFY3 5'UTR 0.28 TCGA-DS-A1OD-01 4 76808020 76808020 G T PPEF2 Silent p.I188I 0.11 TCGA-DS-A1OD-01 4 77020193 77020193 G A ART3 Intron 0.21 TCGA-DS-A1OD-01 4 7776774 7776774 G A AFAP1 Intron 0.33 TCGA-DS-A1OD-01 5 132216777 132216777 G A AFF4 Missense_Mutation p.R1156C 0.15 deleterious(0) probably_damaging(0.995) TCGA-DS-A1OD-01 5 180374555 180374555 A G BTNL8 Silent p.V239V 0.10 TCGA-DS-A1OD-01 5 74970339 74970339 G A POC5 Missense_Mutation p.S550L 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-DS-A1OD-01 5 7851018 7851018 T A C5orf49 Missense_Mutation p.K39N 0.31 tolerated(0.08) possibly_damaging(0.787) TCGA-DS-A1OD-01 6 151726264 151726264 G C RMND1 3'UTR 0.48 TCGA-DS-A1OD-01 6 27783040 27783040 T C HIST1H2BM Silent p.R73R 0.08 TCGA-DS-A1OD-01 6 27783070 27783070 T C HIST1H2BM Silent p.H83H 0.09 TCGA-DS-A1OD-01 6 27783094 27783094 T C HIST1H2BM Silent p.T91T 0.09 TCGA-DS-A1OD-01 6 27783097 27783097 G C HIST1H2BM Silent p.S92S 0.09 TCGA-DS-A1OD-01 6 27783187 27783187 T C HIST1H2BM Silent p.Y122Y 0.11 TCGA-DS-A1OD-01 6 27792246 27792246 C T HIST1H4J 3'UTR 0.15 TCGA-DS-A1OD-01 6 30539290 30539290 C T ABCF1 Missense_Mutation p.P9L 0.14 tolerated_low_confidence(0.05) unknown(0) TCGA-DS-A1OD-01 6 30539323 30539323 G A ABCF1 Missense_Mutation p.S20N 0.13 tolerated_low_confidence(0.38) benign(0.002) TCGA-DS-A1OD-01 6 30593615 30593615 C T MRPS18B 3'UTR 0.12 TCGA-DS-A1OD-01 6 31778370 31778370 C G HSPA1L Silent p.R460R 0.09 TCGA-DS-A1OD-01 6 31778589 31778589 A G HSPA1L Silent p.S387S 0.09 TCGA-DS-A1OD-01 6 31778862 31778862 A G HSPA1L Silent p.Y296Y 0.09 TCGA-DS-A1OD-01 6 31778994 31778994 T C HSPA1L Silent p.K252K 0.08 TCGA-DS-A1OD-01 6 31779075 31779075 A G HSPA1L Silent p.A225A 0.09 TCGA-DS-A1OD-01 6 31779087 31779087 T C HSPA1L Silent p.V221V 0.09 TCGA-DS-A1OD-01 6 31779327 31779327 G C HSPA1L Silent p.V141V 0.08 TCGA-DS-A1OD-01 6 31779591 31779591 A G HSPA1L Silent p.I53I 0.10 TCGA-DS-A1OD-01 6 31779609 31779609 T C HSPA1L Silent p.T47T 0.13 TCGA-DS-A1OD-01 6 31779678 31779678 C T HSPA1L Silent p.Q24Q 0.16 TCGA-DS-A1OD-01 6 31779693 31779693 A G HSPA1L Silent p.C19C 0.18 TCGA-DS-A1OD-01 6 3298370 3298370 T C SLC22A23 Missense_Mutation p.K389E 0.12 deleterious(0.02) possibly_damaging(0.719) TCGA-DS-A1OD-01 6 41185564 41185564 T C TREML3P RNA 0.12 TCGA-DS-A1OD-01 6 41185640 41185640 A G TREML3P RNA 0.09 TCGA-DS-A1OD-01 6 41196530 41196530 C T TREML4 Missense_Mutation p.P48S 0.11 tolerated(0.12) possibly_damaging(0.53) TCGA-DS-A1OD-01 6 7231095 7231095 C A RREB1 Missense_Mutation p.S921R 0.11 deleterious(0.03) possibly_damaging(0.568) TCGA-DS-A1OD-01 7 100682348 100682348 G A MUC17 Missense_Mutation p.E2551K 0.17 possibly_damaging(0.626) TCGA-DS-A1OD-01 7 111927197 111927197 T C ZNF277 Intron 0.31 TCGA-DS-A1OD-01 7 143826554 143826554 A T OR2A14 Missense_Mutation p.M117L 0.08 deleterious(0.02) possibly_damaging(0.484) TCGA-DS-A1OD-01 7 143826573 143826573 C T OR2A14 Missense_Mutation p.A123V 0.11 tolerated(1) benign(0) TCGA-DS-A1OD-01 7 143826576 143826576 A C OR2A14 Missense_Mutation p.D124A 0.10 tolerated(1) benign(0) TCGA-DS-A1OD-01 7 143826602 143826602 A G OR2A14 Missense_Mutation p.S133G 0.09 deleterious(0.01) benign(0.002) TCGA-DS-A1OD-01 7 150864162 150864162 C T GBX1 Silent p.E158E 0.09 TCGA-DS-A1OD-01 7 15601446 15601446 C G AGMO Missense_Mutation p.D9H 0.14 tolerated(0.05) benign(0.064) TCGA-DS-A1OD-01 7 31735209 31735209 C T PPP1R17 Missense_Mutation p.A70V 0.12 tolerated_low_confidence(0.15) benign(0.046) TCGA-DS-A1OD-01 7 6647680 6647680 C T C7orf26 Missense_Mutation p.P413L 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-DS-A1OD-01 7 73150759 73150759 A G ABHD11 3'UTR 0.24 TCGA-DS-A1OD-01 7 73245494 73245494 C T CLDN4 5'UTR 0.15 TCGA-DS-A1OD-01 8 129162365 129162365 C T MIR1208 RNA 0.31 TCGA-DS-A1OD-01 8 21550711 21550711 C G GFRA2 3'UTR 0.23 TCGA-DS-A1OD-01 8 8749116 8749116 C T MFHAS1 Missense_Mutation p.E485K 0.21 tolerated(0.08) benign(0.014) TCGA-DS-A1OD-01 9 108151413 108151413 G T SLC44A1 3'UTR 0.31 TCGA-DS-A1OD-01 9 135251335 135251335 A G TTF1 Silent p.S895S 0.26 TCGA-DS-A1OD-01 X 102968620 102968620 G C TMEM31 Silent p.T67T 0.10 TCGA-DS-A1OD-01 X 118763359 118763359 G A SEPT6 Missense_Mutation p.T401M 0.11 deleterious(0.02) benign(0.009) TCGA-DS-A1OD-01 X 151896220 151896220 G A MAGEA12 3'Flank 0.08 TCGA-DS-A1OD-01 X 151896333 151896333 C T MAGEA12 3'Flank 0.08 TCGA-DS-A1OD-01 X 151896346 151896346 C G MAGEA12 3'Flank 0.10 TCGA-DS-A1OD-01 X 151896643 151896643 C G MAGEA12 3'Flank 0.08 TCGA-DS-A1OD-01 X 151899624 151899624 T C MAGEA12 3'UTR 0.15 TCGA-DS-A1OD-01 X 151900460 151900460 G A MAGEA12 Missense_Mutation p.A114V 0.07 tolerated(0.17) benign(0.01) TCGA-DS-A1OD-01 X 151900476 151900476 G T MAGEA12 Missense_Mutation p.L109I 0.06 tolerated(0.23) benign(0.042) TCGA-DS-A1OD-01 X 151900481 151900481 A G MAGEA12 Missense_Mutation p.V107A 0.09 tolerated(0.53) benign(0.001) TCGA-DS-A1OD-01 X 151900624 151900624 T C MAGEA12 Silent p.P59P 0.08 TCGA-DS-A1OD-01 X 151900687 151900687 A G MAGEA12 Silent p.T38T 0.09 TCGA-DS-A1OD-01 X 151900728 151900728 A G MAGEA12 Silent p.L25L 0.09 TCGA-DS-A1OD-01 X 151900745 151900745 T C MAGEA12 Missense_Mutation p.Q19R 0.09 tolerated(0.16) benign(0.007) TCGA-DS-A1OD-01 X 151900833 151900833 T C MAGEA12 5'UTR 0.19 TCGA-DS-A1OD-01 X 153033841 153033841 C T PLXNB3 Silent p.H431H 0.14 TCGA-DS-A1OD-01 X 21997049 21997049 G T SMS Missense_Mutation p.D239Y 0.15 deleterious(0) probably_damaging(0.952) TCGA-DS-A1OD-01 X 48163730 48163730 T - SSX9 RNA 0.20 TCGA-DS-A1OD-01 X 52677398 52677398 G A SSX7 Missense_Mutation p.P127S 0.06 tolerated(0.17) benign(0.005) TCGA-DS-A3LQ-01 10 125805298 125805298 G C CHST15 Nonsense_Mutation p.S144* 0.38 TCGA-DS-A3LQ-01 11 111368852 111368852 C G BTG4 Missense_Mutation p.R61T 0.04 deleterious(0) probably_damaging(0.998) TCGA-DS-A3LQ-01 11 64678315 64678315 C T ATG2A Silent p.L526L 0.10 TCGA-DS-A3LQ-01 12 4668038 4668038 G A RAD51AP1 Missense_Mutation p.S313N 0.19 deleterious(0.04) probably_damaging(0.913) TCGA-DS-A3LQ-01 12 53605639 53605639 T C RARG Missense_Mutation p.R396G 0.17 deleterious(0) probably_damaging(0.978) TCGA-DS-A3LQ-01 15 102294387 102294387 C G DNM1P47 RNA 0.29 TCGA-DS-A3LQ-01 15 28443555 28443555 A T HERC2 Silent p.S2660S 0.25 TCGA-DS-A3LQ-01 15 83718834 83718834 T C BTBD1 Missense_Mutation p.I219V 0.17 tolerated(0.1) benign(0.246) TCGA-DS-A3LQ-01 15 91578166 91578166 C T AC068831.10 RNA 0.28 TCGA-DS-A3LQ-01 16 2043984 2043984 A G SYNGR3 3'UTR 0.80 TCGA-DS-A3LQ-01 16 2121565 2121565 C T TSC2 Missense_Mutation p.P632S 0.69 tolerated(0.06) benign(0.07) TCGA-DS-A3LQ-01 16 28481749 28481749 C T NPIPB7 Missense_Mutation p.R4H 0.18 deleterious_low_confidence(0) unknown(0) TCGA-DS-A3LQ-01 16 3781863 3781863 G A CREBBP Missense_Mutation p.R1602C 0.09 unknown(0) TCGA-DS-A3LQ-01 16 48395390 48395390 T A SIAH1 3'UTR 0.13 TCGA-DS-A3LQ-01 17 37822219 37822219 A G TCAP Missense_Mutation p.T121A 0.05 tolerated(0.78) benign(0.004) TCGA-DS-A3LQ-01 18 46066203 46066203 G T CTIF Splice_Site 0.36 TCGA-DS-A3LQ-01 19 19654947 19654947 C T CILP2 Silent p.F531F 0.28 TCGA-DS-A3LQ-01 19 44418081 44418081 C T ZNF45 Missense_Mutation p.E503K 0.18 deleterious(0.05) probably_damaging(0.996) TCGA-DS-A3LQ-01 19 54223419 54223419 G A MIR520D RNA 0.20 TCGA-DS-A3LQ-01 19 6750600 6750600 C T TRIP10 Missense_Mutation p.P482L 0.43 tolerated(0.11) benign(0.001) TCGA-DS-A3LQ-01 1 145440399 145440402 ATCA - TXNIP Frame_Shift_Del p.V237Efs*40 0.20 TCGA-DS-A3LQ-01 1 160183602 160183602 C T PEA15 3'UTR 0.08 TCGA-DS-A3LQ-01 1 160466129 160466129 C T SLAMF6 Missense_Mutation p.G35E 0.49 tolerated(0.07) probably_damaging(0.933) TCGA-DS-A3LQ-01 1 177250921 177250921 G A BRINP2 3'UTR 0.30 TCGA-DS-A3LQ-01 1 182025942 182025942 C T ZNF648 Missense_Mutation p.A402T 0.27 tolerated(0.23) benign(0.173) TCGA-DS-A3LQ-01 1 190233994 190233994 C T BRINP3 Splice_Site p.X206_splice 0.18 TCGA-DS-A3LQ-01 1 247768978 247768978 G C OR2G3 Missense_Mutation p.V31L 0.23 tolerated(0.23) benign(0.094) TCGA-DS-A3LQ-01 20 31041275 31041275 G A C20orf112 Silent p.D199D 0.22 TCGA-DS-A3LQ-01 20 45838388 45838388 C T ZMYND8 3'Flank 0.23 TCGA-DS-A3LQ-01 21 33371336 33371336 C T HUNK Missense_Mutation p.R662W 0.30 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DS-A3LQ-01 2 1491726 1491726 C T TPO Silent p.S577S 0.38 TCGA-DS-A3LQ-01 2 178098816 178098816 C A NFE2L2 Missense_Mutation p.D77Y 0.67 deleterious(0) probably_damaging(1) TCGA-DS-A3LQ-01 2 179659227 179659227 C T TTN Missense_Mutation p.V433I 0.77 TCGA-DS-A3LQ-01 2 190531908 190531910 TCT - ASNSD1 In_Frame_Del p.L352del 0.78 TCGA-DS-A3LQ-01 2 215796401 215796401 C T ABCA12 3'UTR 0.39 TCGA-DS-A3LQ-01 2 228883398 228883398 C T SPHKAP Missense_Mutation p.M724I 0.64 tolerated(0.38) benign(0.029) TCGA-DS-A3LQ-01 2 233398660 233398660 C T CHRND Missense_Mutation p.P356L 0.76 deleterious(0.03) probably_damaging(1) TCGA-DS-A3LQ-01 2 23988483 23988483 T A ATAD2B Missense_Mutation p.H1050L 0.25 deleterious(0) probably_damaging(0.949) TCGA-DS-A3LQ-01 2 241700168 241700168 C T KIF1A Silent p.T786T 0.47 TCGA-DS-A3LQ-01 2 97637863 97637863 C T FAM178B Silent p.P113P 0.19 TCGA-DS-A3LQ-01 3 156978729 156978729 C A VEPH1 3'UTR 0.15 TCGA-DS-A3LQ-01 3 169803131 169803131 C A GPR160 3'UTR 0.17 TCGA-DS-A3LQ-01 3 193096463 193096463 C A ATP13A5 Nonsense_Mutation p.E18* 0.19 TCGA-DS-A3LQ-01 3 196876613 196876613 C T DLG1 Splice_Site p.X212_splice 0.72 TCGA-DS-A3LQ-01 4 675741 675741 G T MYL5 Silent p.A160A 0.29 TCGA-DS-A3LQ-01 5 1816078 1816078 C T NDUFS6 3'UTR 0.55 TCGA-DS-A3LQ-01 5 55264184 55264184 G A IL6ST Silent p.N137N 0.26 TCGA-DS-A3LQ-01 5 90445962 90445962 C T GPR98 Missense_Mutation p.T6183M 0.39 probably_damaging(0.93) TCGA-DS-A3LQ-01 6 32148105 32148105 C T RNF5 3'UTR 0.44 TCGA-DS-A3LQ-01 6 45480078 45480079 - C RUNX2 Frame_Shift_Ins p.L321Afs*17 0.45 TCGA-DS-A3LQ-01 7 127637892 127637892 G A SND1 Intron 0.37 TCGA-DS-A3LQ-01 7 128371178 128371178 C T FAM71F1 3'UTR 0.26 TCGA-DS-A3LQ-01 7 21742379 21742379 G A DNAH11 Missense_Mutation p.G2085R 0.40 probably_damaging(0.999) TCGA-DS-A3LQ-01 7 72418648 72418648 C T POM121 Intron 0.28 TCGA-DS-A3LQ-01 8 121583520 121583520 G T SNTB1 Intron 0.33 TCGA-DS-A3LQ-01 8 133036823 133036823 C T OC90 Missense_Mutation p.E447K 0.09 deleterious(0.01) benign(0.062) TCGA-DS-A3LQ-01 8 23708865 23708865 C A STC1 Missense_Mutation p.E147D 0.24 tolerated(0.07) benign(0.064) TCGA-DS-A3LQ-01 8 3047499 3047499 G A CSMD1 Missense_Mutation p.A1778V 0.14 probably_damaging(0.986) TCGA-DS-A3LQ-01 8 61778758 61778758 C T CHD7 3'UTR 0.26 TCGA-DS-A3LQ-01 8 88885686 88885686 G A DCAF4L2 Missense_Mutation p.R172C 0.07 deleterious(0.04) benign(0) TCGA-DS-A3LQ-01 9 119163217 119163217 C G PAPPA 3'UTR 0.50 TCGA-DS-A3LQ-01 9 122011392 122011392 G A BRINP1 Silent p.I85I 0.18 TCGA-DS-A3LQ-01 9 136913301 136913301 G A BRD3 Silent p.Y330Y 0.81 TCGA-DS-A3LQ-01 9 41962144 41962144 C T RP11-204M4.2 RNA 0.25 TCGA-DS-A3LQ-01 9 84549000 84549000 A G RP11-383M4.6 Intron 0.58 TCGA-DS-A3LQ-01 X 112022700 112022700 G A AMOT Silent p.A894A 0.20 TCGA-DS-A3LQ-01 X 75397718 75397718 A G PBDC1 Missense_Mutation p.N226S 0.19 tolerated_low_confidence(0.13) benign(0) TCGA-DS-A5RQ-01 10 112840135 112840135 C T ADRA2A 3'UTR 0.30 TCGA-DS-A5RQ-01 10 135082987 135082987 G A ADAM8 Missense_Mutation p.P637L 0.53 deleterious(0.01) possibly_damaging(0.462) TCGA-DS-A5RQ-01 10 55600127 55600127 T C PCDH15 Silent p.A1312A 0.33 TCGA-DS-A5RQ-01 10 73115968 73115968 C G SLC29A3 Silent p.L247L 0.28 TCGA-DS-A5RQ-01 10 74103225 74103225 C T DNAJB12 Missense_Mutation p.R153K 0.46 tolerated(1) benign(0.013) TCGA-DS-A5RQ-01 10 81701751 81701751 A G SFTPD Missense_Mutation p.V170A 0.41 tolerated(1) benign(0.001) TCGA-DS-A5RQ-01 11 1281216 1281216 C T MUC5B Silent p.S5608S 0.26 TCGA-DS-A5RQ-01 11 128806659 128806659 C T TP53AIP1 Intron 0.57 TCGA-DS-A5RQ-01 11 18636757 18636757 G A SPTY2D1 Missense_Mutation p.P355L 0.44 tolerated(0.15) possibly_damaging(0.713) TCGA-DS-A5RQ-01 11 55322729 55322729 C T OR4C15 Missense_Mutation p.S316F 0.36 tolerated_low_confidence(0.08) benign(0.009) TCGA-DS-A5RQ-01 11 60541372 60541372 G A MS4A15 Silent p.A187A 0.36 TCGA-DS-A5RQ-01 11 67052440 67052440 G A ADRBK1 Missense_Mutation p.E593K 0.28 tolerated(0.17) benign(0.063) TCGA-DS-A5RQ-01 12 102131031 102131031 G T SYCP3 Missense_Mutation p.A60E 0.14 tolerated(0.3) benign(0.009) TCGA-DS-A5RQ-01 12 102271674 102271685 TCAACCCCTTCC - DRAM1 In_Frame_Del p.N37_L40del 0.33 TCGA-DS-A5RQ-01 12 111291255 111291255 C T CCDC63 Missense_Mutation p.S19L 0.38 deleterious(0.04) possibly_damaging(0.748) TCGA-DS-A5RQ-01 12 114260801 114260801 C T RBM19 Intron 0.33 TCGA-DS-A5RQ-01 12 120600928 120600928 C T GCN1L1 Missense_Mutation p.D662N 0.47 benign(0.001) TCGA-DS-A5RQ-01 12 122499558 122499558 C T BCL7A 3'UTR 0.43 TCGA-DS-A5RQ-01 12 2602389 2602389 C T CACNA1C Missense_Mutation p.A317V 0.40 deleterious(0.02) possibly_damaging(0.674) TCGA-DS-A5RQ-01 12 2983505 2983505 G C FOXM1 Missense_Mutation p.S47C 0.20 deleterious(0) benign(0.047) TCGA-DS-A5RQ-01 12 41967170 41967170 C T PDZRN4 Silent p.V863V 0.33 TCGA-DS-A5RQ-01 12 70983807 70983807 C T PTPRB Missense_Mutation p.E663K 0.37 tolerated(0.22) benign(0.055) TCGA-DS-A5RQ-01 12 9321533 9321533 C T PZP Missense_Mutation p.R680Q 0.21 tolerated(0.16) benign(0.005) TCGA-DS-A5RQ-01 13 103257239 103257239 G A TPP2 Missense_Mutation p.E88K 0.27 tolerated(0.29) benign(0.186) TCGA-DS-A5RQ-01 13 73320995 73320995 C T BORA Nonsense_Mutation p.Q410* 0.39 TCGA-DS-A5RQ-01 14 105179925 105179925 C T INF2 Missense_Mutation p.P1008S 0.28 tolerated_low_confidence(0.2) unknown(0) TCGA-DS-A5RQ-01 14 64463825 64463825 C G SYNE2 Missense_Mutation p.S1034C 0.36 probably_damaging(0.922) TCGA-DS-A5RQ-01 14 65016688 65016688 G A PPP1R36 5'UTR 0.37 TCGA-DS-A5RQ-01 15 25481240 25481240 G A SNORD115-36 RNA 0.25 TCGA-DS-A5RQ-01 15 51503070 51503070 C T CYP19A1 Missense_Mutation p.E483K 0.33 deleterious(0) possibly_damaging(0.485) TCGA-DS-A5RQ-01 15 52356491 52356491 C T MAPK6 Missense_Mutation p.S487F 0.28 tolerated_low_confidence(0.24) benign(0) TCGA-DS-A5RQ-01 15 68595340 68595340 C T ITGA11 3'UTR 0.41 TCGA-DS-A5RQ-01 16 1265016 1265016 C T CACNA1H Silent p.I1658I 0.27 TCGA-DS-A5RQ-01 16 20548639 20548639 G A ACSM2B Nonsense_Mutation p.Q559* 0.34 TCGA-DS-A5RQ-01 16 3551050 3551050 C T CLUAP1 5'UTR 0.51 TCGA-DS-A5RQ-01 16 4043460 4043460 C T ADCY9 Missense_Mutation p.E646K 0.60 tolerated(0.17) benign(0.158) TCGA-DS-A5RQ-01 16 67877817 67877817 C A THAP11 3'UTR 0.42 TCGA-DS-A5RQ-01 16 709007 709007 G A WDR90 Missense_Mutation p.E1003K 0.27 tolerated(0.14) benign(0.004) TCGA-DS-A5RQ-01 16 75564065 75564065 G A CHST5 Missense_Mutation p.S73L 0.36 deleterious(0) probably_damaging(1) TCGA-DS-A5RQ-01 16 88110231 88110231 G A BANP Silent p.E508E 0.39 TCGA-DS-A5RQ-01 16 88798301 88798301 G A PIEZO1 Silent p.A1003A 0.31 TCGA-DS-A5RQ-01 16 89650445 89650445 G A CPNE7 Missense_Mutation p.E223K 0.54 deleterious(0.02) possibly_damaging(0.471) TCGA-DS-A5RQ-01 17 1800529 1800529 C T RPA1 3'UTR 0.50 TCGA-DS-A5RQ-01 17 21321776 21321776 G A KCNJ12 3'UTR 0.50 TCGA-DS-A5RQ-01 17 37353713 37353713 G T CACNB1 Nonsense_Mutation p.Y12* 0.80 TCGA-DS-A5RQ-01 17 41610668 41610668 A G ETV4 Silent p.G144G 0.52 TCGA-DS-A5RQ-01 17 46998528 46998528 C T UBE2Z Missense_Mutation p.H233Y 0.65 tolerated(0.38) benign(0.05) TCGA-DS-A5RQ-01 17 72368270 72368270 G C GPR142 Missense_Mutation p.R307T 0.67 tolerated(0.45) benign(0) TCGA-DS-A5RQ-01 17 7826143 7826143 G A KCNAB3 3'UTR 0.34 TCGA-DS-A5RQ-01 19 14513542 14513542 C T CD97 Silent p.L439L 0.32 TCGA-DS-A5RQ-01 19 36035943 36035943 G A GAPDHS Intron 0.38 TCGA-DS-A5RQ-01 19 36035944 36035944 G A GAPDHS Intron 0.38 TCGA-DS-A5RQ-01 19 41388130 41388130 G A CYP2A7 5'UTR 0.33 TCGA-DS-A5RQ-01 19 4222693 4222693 C T ANKRD24 Silent p.F1066F 0.33 TCGA-DS-A5RQ-01 19 49142303 49142303 G A CA11 Missense_Mutation p.S268F 0.43 deleterious(0.02) probably_damaging(0.995) TCGA-DS-A5RQ-01 19 52002702 52002702 G A SIGLEC12 Silent p.L359L 0.29 TCGA-DS-A5RQ-01 19 52002798 52002798 G C SIGLEC12 Silent p.L327L 0.43 TCGA-DS-A5RQ-01 19 53158811 53158811 C T CTD-3099C6.9 5'Flank 0.18 TCGA-DS-A5RQ-01 19 54802507 54802507 C T LILRA3 Missense_Mutation p.D312N 0.33 deleterious(0.02) possibly_damaging(0.638) TCGA-DS-A5RQ-01 1 120612180 120612180 G T NOTCH2 5'UTR 0.18 TCGA-DS-A5RQ-01 1 159558199 159558199 G A APCS Missense_Mutation p.E125K 0.32 deleterious(0) probably_damaging(0.947) TCGA-DS-A5RQ-01 1 68591956 68591956 C T WLS Intron 0.41 TCGA-DS-A5RQ-01 1 71418672 71418672 C T PTGER3 Missense_Mutation p.R392H 0.67 tolerated_low_confidence(0.07) benign(0.001) TCGA-DS-A5RQ-01 1 7723699 7723699 C T CAMTA1 Silent p.S364S 0.74 TCGA-DS-A5RQ-01 20 280405 280405 G A ZCCHC3 3'UTR 0.32 TCGA-DS-A5RQ-01 20 280747 280747 G C ZCCHC3 3'UTR 0.48 TCGA-DS-A5RQ-01 20 30919194 30919194 G A KIF3B 3'UTR 0.38 TCGA-DS-A5RQ-01 20 30919788 30919788 G C KIF3B 3'UTR 0.29 TCGA-DS-A5RQ-01 20 33128394 33128394 A G DYNLRB1 Missense_Mutation p.Y86C 0.47 deleterious(0) probably_damaging(0.918) TCGA-DS-A5RQ-01 20 34537590 34537590 C T PHF20 3'UTR 0.27 TCGA-DS-A5RQ-01 20 61510621 61510621 C T DIDO1 Silent p.S2229S 0.40 TCGA-DS-A5RQ-01 21 38128952 38128952 C T HLCS Missense_Mutation p.D634N 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-DS-A5RQ-01 21 45499971 45499971 G A TRAPPC10 Silent p.E562E 0.24 TCGA-DS-A5RQ-01 21 45953680 45953680 G A TSPEAR Nonsense_Mutation p.R144* 0.25 TCGA-DS-A5RQ-01 22 18066190 18066190 G A SLC25A18 Missense_Mutation p.R100Q 0.28 tolerated(0.17) benign(0.017) TCGA-DS-A5RQ-01 22 21377259 21377259 C G P2RX6 Missense_Mutation p.F164L 0.29 tolerated(0.14) benign(0.158) TCGA-DS-A5RQ-01 22 22055456 22055456 C G YPEL1 Missense_Mutation p.E108Q 0.33 deleterious(0) probably_damaging(1) TCGA-DS-A5RQ-01 22 29746068 29746068 C T AP1B1 Silent p.E409E 0.50 TCGA-DS-A5RQ-01 22 36863839 36863839 C T TXN2 3'UTR 0.36 TCGA-DS-A5RQ-01 22 50694089 50694089 C T MAPK12 Silent p.T242T 0.41 TCGA-DS-A5RQ-01 2 100011189 100011189 G A EIF5B Missense_Mutation p.V1033I 0.29 benign(0.241) TCGA-DS-A5RQ-01 2 10729803 10729803 C T NOL10 Silent p.E499E 0.45 TCGA-DS-A5RQ-01 2 122139867 122139867 C T CLASP1 Silent p.A1136A 0.11 TCGA-DS-A5RQ-01 2 128747378 128747378 C T SAP130 Missense_Mutation p.V540I 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.688) TCGA-DS-A5RQ-01 2 157441882 157441882 G A GPD2 3'UTR 0.38 TCGA-DS-A5RQ-01 2 1670062 1670062 C G PXDN Silent p.G405G 0.26 TCGA-DS-A5RQ-01 2 168115287 168115287 C A XIRP2 3'UTR 0.35 TCGA-DS-A5RQ-01 2 17897485 17897485 G A SMC6 Nonsense_Mutation p.Q465* 0.30 TCGA-DS-A5RQ-01 2 179456782 179456782 C T TTN Missense_Mutation p.R19950Q 0.19 TCGA-DS-A5RQ-01 2 185800685 185800685 G A ZNF804A Missense_Mutation p.E188K 0.19 tolerated(0.32) probably_damaging(0.971) TCGA-DS-A5RQ-01 2 202211365 202211365 C G ALS2CR12 Missense_Mutation p.V90L 0.32 tolerated(0.22) benign(0.013) TCGA-DS-A5RQ-01 2 237076492 237076492 G A GBX2 Silent p.Y41Y 0.55 TCGA-DS-A5RQ-01 2 241556430 241556430 G A GPR35 Intron 0.30 TCGA-DS-A5RQ-01 2 42557884 42557884 A G EML4 3'UTR 0.30 TCGA-DS-A5RQ-01 2 70890361 70890361 C A ADD2 3'UTR 0.33 TCGA-DS-A5RQ-01 2 73302590 73302590 G A RAB11FIP5 3'UTR 0.29 TCGA-DS-A5RQ-01 2 86718287 86718287 C G KDM3A Missense_Mutation p.I1258M 0.25 deleterious(0) probably_damaging(0.999) TCGA-DS-A5RQ-01 2 99241749 99241749 C A MGAT4A 3'UTR 0.25 TCGA-DS-A5RQ-01 3 119099772 119099772 G A ARHGAP31 Missense_Mutation p.E124K 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DS-A5RQ-01 3 126151924 126151924 C T CCDC37 Silent p.V433V 0.32 TCGA-DS-A5RQ-01 3 150883767 150883767 G C MED12L Missense_Mutation p.E498Q 0.19 tolerated(0.15) probably_damaging(0.983) TCGA-DS-A5RQ-01 3 154139158 154139158 C T GPR149 Missense_Mutation p.M431I 0.45 tolerated(0.22) benign(0.008) TCGA-DS-A5RQ-01 3 169664440 169664440 C G RP11-379K17.4 RNA 0.41 TCGA-DS-A5RQ-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.30 deleterious(0.02) probably_damaging(0.959) TCGA-DS-A5RQ-01 3 195965567 195965567 C T PCYT1A Missense_Mutation p.E366K 0.27 deleterious_low_confidence(0.03) probably_damaging(0.985) TCGA-DS-A5RQ-01 3 30715678 30715678 G A TGFBR2 Missense_Mutation p.D471N 0.62 deleterious(0) probably_damaging(1) TCGA-DS-A5RQ-01 3 35835544 35835544 C T ARPP21 3'UTR 0.50 TCGA-DS-A5RQ-01 3 47958076 47958076 G A MAP4 Missense_Mutation p.S414L 0.72 deleterious(0) benign(0.354) TCGA-DS-A5RQ-01 3 51431871 51431871 C T RBM15B 3'UTR 0.40 TCGA-DS-A5RQ-01 3 68781336 68781336 A G FAM19A4 3'UTR 0.36 TCGA-DS-A5RQ-01 3 9515122 9515122 C T SETD5 Missense_Mutation p.S1133F 0.60 deleterious(0.04) possibly_damaging(0.898) TCGA-DS-A5RQ-01 3 99879313 99879313 G A CMSS1 Missense_Mutation p.E65K 0.39 deleterious(0.04) benign(0.303) TCGA-DS-A5RQ-01 4 100048484 100048484 C T ADH4 Silent p.L285L 0.31 TCGA-DS-A5RQ-01 4 62599062 62599062 G A LPHN3 Missense_Mutation p.D329N 0.42 deleterious(0) probably_damaging(1) TCGA-DS-A5RQ-01 5 102338740 102338740 G A PAM Silent p.S539S 0.35 TCGA-DS-A5RQ-01 5 135382984 135382984 C T TGFBI Missense_Mutation p.R216W 0.49 deleterious(0) probably_damaging(0.999) TCGA-DS-A5RQ-01 5 138940793 138940793 G A UBE2D2 5'UTR 0.39 TCGA-DS-A5RQ-01 5 140481518 140481518 C A PCDHB3 Missense_Mutation p.P429T 0.34 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-DS-A5RQ-01 5 149433264 149433264 C T CSF1R 3'UTR 0.15 TCGA-DS-A5RQ-01 5 3599344 3599344 G A IRX1 Silent p.S94S 0.35 TCGA-DS-A5RQ-01 5 41069835 41069835 G T MROH2B Missense_Mutation p.N16K 0.62 deleterious_low_confidence(0.01) possibly_damaging(0.604) TCGA-DS-A5RQ-01 5 5239840 5239840 C T ADAMTS16 Silent p.R775R 0.35 TCGA-DS-A5RQ-01 5 68666944 68666944 T C RAD17 5'UTR 0.44 TCGA-DS-A5RQ-01 6 107419870 107419870 T C BEND3 Missense_Mutation p.H42R 0.40 tolerated_low_confidence(0.15) benign(0.058) TCGA-DS-A5RQ-01 6 107474880 107474880 C T PDSS2 3'UTR 0.46 TCGA-DS-A5RQ-01 6 111279832 111279832 C T GTF3C6 5'UTR 0.67 TCGA-DS-A5RQ-01 6 118638208 118638208 C T SLC35F1 3'UTR 0.23 TCGA-DS-A5RQ-01 6 150322552 150322552 C G RAET1K RNA 0.40 TCGA-DS-A5RQ-01 6 150322616 150322616 C T RAET1K RNA 0.35 TCGA-DS-A5RQ-01 6 15501191 15501191 G A JARID2 Missense_Mutation p.G667S 0.45 deleterious(0) probably_damaging(1) TCGA-DS-A5RQ-01 6 43010606 43010606 G T CUL7 Missense_Mutation p.F1277L 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-DS-A5RQ-01 6 75898136 75898136 G A COL12A1 Silent p.I313I 0.23 TCGA-DS-A5RQ-01 6 84913752 84913752 C A KIAA1009 Nonsense_Mutation p.E212* 0.61 TCGA-DS-A5RQ-01 7 100344303 100344303 C T ZAN Silent p.L303L 0.41 TCGA-DS-A5RQ-01 7 112461714 112461714 C T C7orf60 3'UTR 0.32 TCGA-DS-A5RQ-01 7 120768478 120768478 G C CPED1 Missense_Mutation p.E449Q 0.18 deleterious(0.01) probably_damaging(0.937) TCGA-DS-A5RQ-01 7 127725781 127725781 G A SND1 Silent p.E751E 0.34 TCGA-DS-A5RQ-01 7 128040436 128040436 C T IMPDH1 Missense_Mutation p.R246Q 0.39 deleterious(0.02) possibly_damaging(0.595) TCGA-DS-A5RQ-01 7 128531841 128531841 C T KCP RNA 0.25 TCGA-DS-A5RQ-01 7 40132638 40132638 C T CDK13 Nonsense_Mutation p.Q1164* 0.33 TCGA-DS-A5RQ-01 7 5642988 5642988 G A FSCN1 Silent p.T311T 0.41 TCGA-DS-A5RQ-01 7 94881166 94881166 T C PPP1R9A Missense_Mutation p.V830A 0.34 tolerated(0.82) benign(0.008) TCGA-DS-A5RQ-01 8 103335715 103335715 C G UBR5 Missense_Mutation p.L536F 0.26 deleterious(0.01) possibly_damaging(0.702) TCGA-DS-A5RQ-01 8 21965792 21965792 C T NUDT18 Silent p.G76G 0.38 TCGA-DS-A5RQ-01 9 100075523 100075523 G A CCDC180 Missense_Mutation p.E163K 0.37 deleterious(0.02) benign(0.155) TCGA-DS-A5RQ-01 9 128723096 128723096 A G PBX3 Missense_Mutation p.N326S 0.35 tolerated(1) benign(0) TCGA-DS-A5RQ-01 9 131752436 131752436 A G NUP188 Silent p.K857K 0.38 TCGA-DS-A5RQ-01 9 140053108 140053108 C T GRIN1 Silent p.G404G 0.41 TCGA-DS-A5RQ-01 9 19102766 19102766 A G HAUS6 5'UTR 0.11 TCGA-DS-A5RQ-01 9 33111920 33111920 G A B4GALT1 3'UTR 0.33 TCGA-DS-A5RQ-01 9 35093126 35093126 G A PIGO Silent p.I340I 0.52 TCGA-DS-A5RQ-01 9 91090483 91090483 C A SPIN1 3'UTR 0.31 TCGA-DS-A5RQ-01 9 95481438 95481438 C T BICD2 Missense_Mutation p.E497K 0.25 deleterious(0.01) benign(0.146) TCGA-DS-A5RQ-01 X 117162393 117162393 C T KLHL13 Missense_Mutation p.R15H 0.36 tolerated_low_confidence(0.05) benign(0) TCGA-DS-A5RQ-01 X 119658864 119658864 G A CUL4B 3'Flank 0.24 TCGA-DS-A5RQ-01 X 128922006 128922006 C T SASH3 Missense_Mutation p.S38F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-DS-A5RQ-01 X 13337277 13337277 G A ATXN3L Silent p.S259S 0.30 TCGA-DS-A5RQ-01 X 135585077 135585077 G C HTATSF1 Missense_Mutation p.K237N 0.25 deleterious(0.01) possibly_damaging(0.753) TCGA-DS-A5RQ-01 X 140984701 140984701 C T MAGEC3 Missense_Mutation p.P386L 0.25 tolerated(0.19) benign(0.19) TCGA-DS-A5RQ-01 X 148579754 148579754 C T IDS Missense_Mutation p.D198N 0.29 deleterious(0) probably_damaging(1) TCGA-DS-A5RQ-01 X 17744357 17744357 G A NHS Missense_Mutation p.D690N 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-DS-A5RQ-01 X 30269339 30269339 G C MAGEB1 Missense_Mutation p.K243N 0.50 deleterious(0.01) probably_damaging(0.914) TCGA-DS-A5RQ-01 X 3238158 3238158 G A MXRA5 Silent p.L1856L 0.18 TCGA-DS-A5RQ-01 X 39932689 39932689 G A BCOR Missense_Mutation p.S637F 0.24 deleterious(0.04) probably_damaging(0.997) TCGA-DS-A5RQ-01 X 47060913 47060913 C T UBA1 Nonsense_Mutation p.R239* 0.45 TCGA-DS-A5RQ-01 X 51149908 51149908 C A CXorf67 Missense_Mutation p.Q14K 0.17 tolerated(0.26) probably_damaging(0.932) TCGA-DS-A5RQ-01 X 54491927 54491927 C G FGD1 Silent p.L531L 0.09 TCGA-DS-A5RQ-01 X 73071972 73071972 G A XIST RNA 0.16 TCGA-DS-A5RQ-01 X 84502592 84502592 G T ZNF711 Missense_Mutation p.G5V 0.30 tolerated_low_confidence(0.09) benign(0.387) TCGA-DS-A5RQ-01 X 92966151 92966151 C T FAM133A 3'UTR 0.18 TCGA-DS-A7WF-01 10 104176651 104176651 G A PSD Nonsense_Mutation p.R49* 0.53 TCGA-DS-A7WF-01 10 31816380 31816380 C A ZEB1 3'UTR 0.27 TCGA-DS-A7WF-01 10 38407121 38407121 A G ZNF37A Missense_Mutation p.T348A 0.51 tolerated(0.07) probably_damaging(0.943) TCGA-DS-A7WF-01 10 95372693 95372693 G A PDE6C Missense_Mutation p.E71K 0.33 tolerated(0.09) benign(0.008) TCGA-DS-A7WF-01 10 99416696 99416696 G T PI4K2A Missense_Mutation p.R266L 0.46 deleterious(0.02) possibly_damaging(0.68) TCGA-DS-A7WF-01 11 118130861 118130861 C T MPZL2 Silent p.L164L 0.49 TCGA-DS-A7WF-01 11 2909859 2909859 G A SLC22A18AS Missense_Mutation p.R105W 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-DS-A7WF-01 11 47510459 47510459 G A CELF1 Silent p.F63F 0.54 TCGA-DS-A7WF-01 11 49221891 49221891 C T FOLH1 Silent p.E109E 0.39 TCGA-DS-A7WF-01 11 85372451 85372451 C A CREBZF 3'UTR 0.38 TCGA-DS-A7WF-01 12 33030840 33030840 G A PKP2 Missense_Mutation p.A325V 0.08 tolerated(0.12) benign(0.049) TCGA-DS-A7WF-01 12 56221240 56221240 C G DNAJC14 Missense_Mutation p.L401F 0.25 tolerated(0.35) benign(0.004) TCGA-DS-A7WF-01 12 70087583 70087583 C T BEST3 Missense_Mutation p.D118N 0.09 deleterious(0) probably_damaging(0.972) TCGA-DS-A7WF-01 13 30077199 30077199 G A MTUS2 Silent p.L1332L 0.37 TCGA-DS-A7WF-01 13 37679761 37679761 C T CSNK1A1L 5'UTR 0.54 TCGA-DS-A7WF-01 13 86368987 86368987 C T SLITRK6 Missense_Mutation p.D553N 0.36 tolerated(0.12) benign(0.001) TCGA-DS-A7WF-01 15 72144517 72144517 G C MYO9A Missense_Mutation p.P2144R 0.43 deleterious(0) probably_damaging(1) TCGA-DS-A7WF-01 16 84778704 84778704 C T USP10 Missense_Mutation p.P206L 0.46 deleterious_low_confidence(0.04) benign(0.394) TCGA-DS-A7WF-01 16 88747747 88747766 CCGCCCGGGGCTCGGGGCAT - SNAI3 Frame_Shift_Del p.M145Lfs*2 0.40 TCGA-DS-A7WF-01 17 37369376 37369376 C A STAC2 Missense_Mutation p.G335C 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-DS-A7WF-01 17 37899650 37899650 C A GRB7 Missense_Mutation p.S220Y 0.25 tolerated(0.18) benign(0.095) TCGA-DS-A7WF-01 19 17597707 17597707 C G SLC27A1 Missense_Mutation p.A168G 0.29 tolerated(0.11) benign(0.049) TCGA-DS-A7WF-01 19 18994898 18994898 G A CERS1 Silent p.F196F 0.49 TCGA-DS-A7WF-01 19 47597687 47597687 C A ZC3H4 Nonsense_Mutation p.E114* 0.13 TCGA-DS-A7WF-01 19 48052515 48052515 G A ZNF541 Missense_Mutation p.R179C 0.27 deleterious(0) probably_damaging(1) TCGA-DS-A7WF-01 19 53793653 53793653 G A BIRC8 5'UTR 0.45 TCGA-DS-A7WF-01 1 153084931 153084931 G T SPRR2F 3'UTR 0.43 TCGA-DS-A7WF-01 1 158226066 158226066 C T CD1A Missense_Mutation p.R200W 0.49 deleterious(0) probably_damaging(0.977) TCGA-DS-A7WF-01 1 1663695 1663695 A G SLC35E2 3'UTR 0.25 TCGA-DS-A7WF-01 1 205768158 205768158 G A SLC41A1 Silent p.H208H 0.24 TCGA-DS-A7WF-01 1 229678057 229678057 A C ABCB10 Missense_Mutation p.I328S 0.42 deleterious(0.01) benign(0.102) TCGA-DS-A7WF-01 1 240255683 240255683 G A FMN2 Missense_Mutation p.G92S 0.38 unknown(0) TCGA-DS-A7WF-01 1 60294516 60294516 A C HOOK1 Silent p.R72R 0.42 TCGA-DS-A7WF-01 20 43386811 43386811 C T RIMS4 Missense_Mutation p.G85E 0.46 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DS-A7WF-01 22 24302513 24302513 C T GSTT2B Silent p.T56T 0.24 TCGA-DS-A7WF-01 22 24323194 24323194 G A GSTT2 Silent p.T56T 0.23 TCGA-DS-A7WF-01 2 189907496 189907496 G A COL5A2 Missense_Mutation p.P1159S 0.53 unknown(0) TCGA-DS-A7WF-01 2 70408314 70408314 G T C2orf42 Missense_Mutation p.F268L 0.47 tolerated(0.06) possibly_damaging(0.876) TCGA-DS-A7WF-01 3 160970625 160970625 G A NMD3 3'Flank 0.42 TCGA-DS-A7WF-01 3 178952086 178952086 T G PIK3CA Missense_Mutation p.H1047Q 0.39 tolerated(0.24) benign(0.076) TCGA-DS-A7WF-01 3 52581665 52581666 TG - PBRM1 3'Flank 0.12 TCGA-DS-A7WF-01 3 56468506 56468506 G A ERC2 Missense_Mutation p.S177F 0.53 deleterious(0) probably_damaging(0.997) TCGA-DS-A7WF-01 5 137593424 137593424 C T GFRA3 Missense_Mutation p.R230H 0.29 deleterious(0) probably_damaging(1) TCGA-DS-A7WF-01 5 140595285 140595285 C T PCDHB13 Silent p.R530R 0.43 TCGA-DS-A7WF-01 5 148746982 148746982 C G PCYOX1L Missense_Mutation p.L248V 0.53 tolerated(0.1) possibly_damaging(0.755) TCGA-DS-A7WF-01 5 150578618 150578618 G A CCDC69 Nonsense_Mutation p.R87* 0.48 TCGA-DS-A7WF-01 5 156915286 156915286 C T ADAM19 Missense_Mutation p.C846Y 0.50 tolerated(1) benign(0.001) TCGA-DS-A7WF-01 6 138202276 138202276 G T TNFAIP3 Missense_Mutation p.E731D 0.41 tolerated(0.67) benign(0.252) TCGA-DS-A7WF-01 7 44302628 44302628 G A CAMK2B Missense_Mutation p.R66C 0.43 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DS-A7WF-01 8 145094844 145094844 C T SPATC1 Silent p.N82N 0.33 TCGA-DS-A7WF-01 8 23112868 23112868 G A CHMP7 Missense_Mutation p.E194K 0.32 deleterious(0.03) benign(0.205) TCGA-DS-A7WF-01 8 53853152 53853152 C T NPBWR1 Missense_Mutation p.R229W 0.43 deleterious(0.02) probably_damaging(0.981) TCGA-DS-A7WF-01 8 64122717 64122717 A G YTHDF3 3'UTR 0.48 TCGA-DS-A7WF-01 8 88296944 88296944 G T CNBD1 Missense_Mutation p.M270I 0.34 tolerated(0.61) benign(0) TCGA-DS-A7WF-01 9 132637870 132637870 C A USP20 Missense_Mutation p.D750E 0.41 tolerated(0.69) benign(0.217) TCGA-DS-A7WF-01 9 33113081 33113081 A T B4GALT1 3'UTR 0.53 TCGA-DS-A7WF-01 X 117927146 117927146 G A IL13RA1 3'UTR 0.55 TCGA-DS-A7WF-01 X 152801868 152801868 G T ATP2B3 Missense_Mutation p.D55Y 0.25 deleterious(0) probably_damaging(0.951) TCGA-DS-A7WF-01 X 153129343 153129346 TATT - L1CAM Frame_Shift_Del p.K1150Tfs*3 0.15 TCGA-DS-A7WF-01 X 69455618 69455618 G A AWAT1 Silent p.P43P 0.46 TCGA-DS-A7WF-01 X 70338671 70338671 G T MED12 Missense_Mutation p.D23Y 0.44 probably_damaging(0.998) TCGA-DS-A7WF-01 X 70362006 70362024 AATCTCTGGTTTTTCACAG - MED12 Splice_Site p.X2164_splice 0.40 TCGA-DS-A7WH-01 10 115351979 115351979 G A NRAP Missense_Mutation p.R1540W 0.15 deleterious(0) possibly_damaging(0.875) TCGA-DS-A7WH-01 10 131634043 131634043 C T EBF3 3'UTR 0.42 TCGA-DS-A7WH-01 10 32095661 32095661 C T ARHGAP12 3'UTR 0.32 TCGA-DS-A7WH-01 10 49400875 49400875 G A FRMPD2 Missense_Mutation p.L673F 0.31 tolerated(0.17) benign(0.097) TCGA-DS-A7WH-01 10 7244472 7244472 C G SFMBT2 Missense_Mutation p.R486T 0.40 deleterious(0.03) benign(0.014) TCGA-DS-A7WH-01 10 85997035 85997035 G C LRIT1 Missense_Mutation p.S177C 0.38 deleterious(0.03) possibly_damaging(0.726) TCGA-DS-A7WH-01 10 98172979 98172979 C T TLL2 Missense_Mutation p.A340T 0.48 tolerated(0.07) benign(0.054) TCGA-DS-A7WH-01 11 102663348 102663348 G A MMP1 Missense_Mutation p.R341W 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-DS-A7WH-01 11 118869204 118869204 G A CCDC84 Missense_Mutation p.R62Q 0.39 tolerated(0.59) benign(0.049) TCGA-DS-A7WH-01 11 123847819 123847819 C T OR10S1 Missense_Mutation p.D194N 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-DS-A7WH-01 11 1274084 1274084 G A MUC5B Missense_Mutation p.V5031M 0.40 unknown(0) TCGA-DS-A7WH-01 11 43471629 43471629 C A TTC17 Intron 0.41 TCGA-DS-A7WH-01 11 47186033 47186033 C T ARFGAP2 3'UTR 0.46 TCGA-DS-A7WH-01 11 86782583 86782583 C G TMEM135 Missense_Mutation p.F96L 0.38 deleterious(0.01) possibly_damaging(0.55) TCGA-DS-A7WH-01 12 119594444 119594444 G A SRRM4 Silent p.R559R 0.37 TCGA-DS-A7WH-01 12 122745896 122745896 C T VPS33A Missense_Mutation p.G132E 0.28 deleterious(0.01) probably_damaging(0.939) TCGA-DS-A7WH-01 12 122745916 122745916 C T VPS33A Silent p.L125L 0.25 TCGA-DS-A7WH-01 12 122794404 122794404 G A CLIP1 Nonsense_Mutation p.Q1167* 0.13 TCGA-DS-A7WH-01 12 21668831 21668831 G A GOLT1B 3'UTR 0.44 TCGA-DS-A7WH-01 12 27951137 27951138 - T KLHL42 3'UTR 0.29 TCGA-DS-A7WH-01 12 43822200 43822200 G T ADAMTS20 Nonsense_Mutation p.C1263* 0.34 TCGA-DS-A7WH-01 12 48183673 48183673 G T HDAC7 Missense_Mutation p.H672N 0.42 deleterious(0) probably_damaging(0.996) TCGA-DS-A7WH-01 12 57543506 57543506 C T LRP1 Intron 0.43 TCGA-DS-A7WH-01 12 57920028 57920028 C G MBD6 Missense_Mutation p.S426C 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-DS-A7WH-01 12 58121158 58121158 G A AGAP2 Missense_Mutation p.S1022L 0.38 tolerated(0.06) benign(0.002) TCGA-DS-A7WH-01 13 43843680 43843680 T G ENOX1 Missense_Mutation p.K494Q 0.27 deleterious(0.04) probably_damaging(0.995) TCGA-DS-A7WH-01 14 106436535 106436535 G A ADAM6 RNA 0.36 TCGA-DS-A7WH-01 14 20937663 20937663 C G PNP 5'UTR 0.40 TCGA-DS-A7WH-01 14 21793410 21793410 C T RPGRIP1 Silent p.F745F 0.27 TCGA-DS-A7WH-01 14 24646668 24646668 C T REC8 Intron 0.22 TCGA-DS-A7WH-01 14 64676741 64676741 C T SYNE2 Missense_Mutation p.R6208C 0.44 probably_damaging(0.95) TCGA-DS-A7WH-01 14 66209687 66209687 A T FUT8 3'UTR 0.40 TCGA-DS-A7WH-01 14 91701285 91701285 G A GPR68 Missense_Mutation p.P37L 0.34 deleterious(0) probably_damaging(0.952) TCGA-DS-A7WH-01 15 23812809 23812809 G T MKRN3 3'UTR 0.30 TCGA-DS-A7WH-01 15 41068475 41068475 C T DNAJC17 Missense_Mutation p.E133K 0.39 tolerated(0.44) benign(0.139) TCGA-DS-A7WH-01 15 42503860 42503860 C G TMEM87A 3'UTR 0.26 TCGA-DS-A7WH-01 15 43813195 43813195 C G MAP1A 5'UTR 0.27 TCGA-DS-A7WH-01 15 43814952 43814952 G T MAP1A Missense_Mutation p.R427S 0.38 possibly_damaging(0.506) TCGA-DS-A7WH-01 15 43815649 43815649 G C MAP1A Missense_Mutation p.E660Q 0.18 possibly_damaging(0.897) TCGA-DS-A7WH-01 15 43816492 43816492 G T MAP1A Nonsense_Mutation p.E941* 0.35 TCGA-DS-A7WH-01 15 43817734 43817734 G A MAP1A Missense_Mutation p.E1355K 0.36 possibly_damaging(0.547) TCGA-DS-A7WH-01 15 72119066 72119066 T G MYO9A Missense_Mutation p.K2501T 0.35 tolerated_low_confidence(0.06) possibly_damaging(0.894) TCGA-DS-A7WH-01 16 22926815 22926815 C T HS3ST2 Nonsense_Mutation p.R346* 0.25 TCGA-DS-A7WH-01 16 30982737 30982737 C T SETD1A Silent p.L1019L 0.33 TCGA-DS-A7WH-01 16 57608854 57608854 G A GPR114 Missense_Mutation p.D446N 0.50 tolerated(0.25) benign(0.038) TCGA-DS-A7WH-01 16 863350 863350 C T PRR25 Missense_Mutation p.P233L 0.62 tolerated_low_confidence(1) benign(0) TCGA-DS-A7WH-01 17 16229229 16229229 C T PIGL 3'UTR 0.17 TCGA-DS-A7WH-01 17 27291100 27291100 G A SEZ6 Missense_Mutation p.H374Y 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-DS-A7WH-01 17 40724426 40724426 C G PSMC3IP 3'UTR 0.24 TCGA-DS-A7WH-01 17 40843185 40843185 G A CNTNAP1 Missense_Mutation p.R697Q 0.40 deleterious(0) possibly_damaging(0.529) TCGA-DS-A7WH-01 17 48595976 48595976 C T MYCBPAP Silent p.A224A 0.35 TCGA-DS-A7WH-01 17 56572621 56572621 G A MTMR4 Missense_Mutation p.S961L 0.30 tolerated(0.64) benign(0.206) TCGA-DS-A7WH-01 17 57322867 57322867 G A GDPD1 Missense_Mutation p.R93K 0.34 deleterious(0) probably_damaging(1) TCGA-DS-A7WH-01 17 62496426 62496426 C T DDX5 Missense_Mutation p.G487E 0.48 deleterious(0.03) benign(0.033) TCGA-DS-A7WH-01 17 71420166 71420166 C T SDK2 Missense_Mutation p.R550K 0.33 tolerated(1) benign(0.002) TCGA-DS-A7WH-01 17 7297654 7297654 G A TMEM256-PLSCR3 5'UTR 0.35 TCGA-DS-A7WH-01 17 77093805 77093805 G A RBFOX3 Silent p.V197V 0.39 TCGA-DS-A7WH-01 17 79634867 79634867 C T CCDC137 Silent p.I81I 0.46 TCGA-DS-A7WH-01 18 2946312 2946312 G A LPIN2 Intron 0.35 TCGA-DS-A7WH-01 18 9255339 9255339 G C ANKRD12 Missense_Mutation p.D692H 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DS-A7WH-01 18 9255426 9255426 G C ANKRD12 Missense_Mutation p.E721Q 0.17 tolerated_low_confidence(0.07) possibly_damaging(0.723) TCGA-DS-A7WH-01 18 9255435 9255435 T A ANKRD12 Missense_Mutation p.S724T 0.17 tolerated_low_confidence(0.13) benign(0.003) TCGA-DS-A7WH-01 18 9255588 9255588 G C ANKRD12 Missense_Mutation p.E775Q 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.752) TCGA-DS-A7WH-01 18 9255690 9255690 G T ANKRD12 Nonsense_Mutation p.E809* 0.44 TCGA-DS-A7WH-01 18 9255795 9255795 G A ANKRD12 Missense_Mutation p.E844K 0.43 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-DS-A7WH-01 18 9255813 9255813 G A ANKRD12 Missense_Mutation p.E850K 0.39 deleterious_low_confidence(0.03) benign(0.297) TCGA-DS-A7WH-01 18 9255831 9255831 G C ANKRD12 Missense_Mutation p.D856H 0.40 deleterious_low_confidence(0) possibly_damaging(0.671) TCGA-DS-A7WH-01 18 9255921 9255921 G C ANKRD12 Missense_Mutation p.E886Q 0.25 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-DS-A7WH-01 19 13928068 13928068 G A ZSWIM4 Missense_Mutation p.E407K 0.38 deleterious(0.02) unknown(0) TCGA-DS-A7WH-01 19 37382909 37382909 G A ZNF829 Missense_Mutation p.H343Y 0.27 deleterious(0.01) probably_damaging(0.962) TCGA-DS-A7WH-01 19 41081607 41081607 G A SPTBN4 3'UTR 0.27 TCGA-DS-A7WH-01 19 48551505 48551505 G A PLA2G4C 3'UTR 0.30 TCGA-DS-A7WH-01 19 49714020 49714020 C T TRPM4 Missense_Mutation p.H1128Y 0.20 deleterious(0) benign(0.071) TCGA-DS-A7WH-01 19 50028011 50028011 G A FCGRT Silent p.A283A 0.33 TCGA-DS-A7WH-01 19 50266447 50266447 C T TSKS Missense_Mutation p.D20N 0.23 deleterious(0) probably_damaging(0.998) TCGA-DS-A7WH-01 19 50266487 50266487 C T TSKS Silent p.V6V 0.22 TCGA-DS-A7WH-01 19 50474471 50474471 C T SIGLEC16 RNA 0.15 TCGA-DS-A7WH-01 1 10699830 10699830 G A CASZ1 Silent p.R1483R 0.23 TCGA-DS-A7WH-01 1 110888941 110888941 G A RBM15 3'UTR 0.28 TCGA-DS-A7WH-01 1 119923268 119923268 G A HAO2 Intron 0.29 TCGA-DS-A7WH-01 1 12065800 12065800 C T MFN2 Missense_Mutation p.R510W 0.21 deleterious(0.02) possibly_damaging(0.781) TCGA-DS-A7WH-01 1 1601573 1601573 G A SLC35E2B Missense_Mutation p.S242L 0.29 deleterious(0) probably_damaging(1) TCGA-DS-A7WH-01 1 26387774 26387774 C G TRIM63 Missense_Mutation p.E128D 0.42 deleterious(0.03) probably_damaging(0.997) TCGA-DS-A7WH-01 1 27088756 27088756 C T ARID1A Nonsense_Mutation p.Q789* 0.25 TCGA-DS-A7WH-01 1 33239758 33239758 G A KIAA1522 3'UTR 0.35 TCGA-DS-A7WH-01 1 35222961 35222961 G A GJB5 Silent p.L10L 0.32 TCGA-DS-A7WH-01 1 40307502 40307502 G A TRIT1 Nonsense_Mutation p.Q440* 0.28 TCGA-DS-A7WH-01 1 6170487 6170487 C T CHD5 Silent p.E1783E 0.36 TCGA-DS-A7WH-01 1 6511961 6511961 G A ESPN Silent p.A710A 0.31 TCGA-DS-A7WH-01 1 89430628 89430628 G A CCBL2 Silent p.L113L 0.30 TCGA-DS-A7WH-01 1 980904 980907 GTGA - AGRN Splice_Site p.X846_splice 0.47 TCGA-DS-A7WH-01 20 1349998 1349998 G A FKBP1A 3'UTR 0.37 TCGA-DS-A7WH-01 20 25443162 25443162 C G NINL Missense_Mutation p.D1147H 0.43 deleterious(0.01) probably_damaging(0.921) TCGA-DS-A7WH-01 20 33026421 33026421 A C ITCH Missense_Mutation p.T263P 0.33 tolerated(0.25) probably_damaging(0.958) TCGA-DS-A7WH-01 20 4680839 4680839 G C PRNP 3'UTR 0.28 TCGA-DS-A7WH-01 20 47874075 47874075 C T ZNFX1 Missense_Mutation p.R848Q 0.17 tolerated(0.44) benign(0.003) TCGA-DS-A7WH-01 20 60790956 60790956 C T HRH3 3'UTR 0.33 TCGA-DS-A7WH-01 22 44287689 44287689 G A PNPLA5 Silent p.H24H 0.37 TCGA-DS-A7WH-01 22 46631446 46631446 C A PPARA 3'UTR 0.42 TCGA-DS-A7WH-01 2 103380846 103380846 G A TMEM182 Missense_Mutation p.M97I 0.35 tolerated(0.27) benign(0.006) TCGA-DS-A7WH-01 2 15614432 15614432 G A NBAS Missense_Mutation p.A453V 0.32 tolerated(0.26) benign(0.341) TCGA-DS-A7WH-01 2 172604356 172604356 G A DYNC1I2 Missense_Mutation p.R625Q 0.32 tolerated(1) probably_damaging(0.96) TCGA-DS-A7WH-01 2 179498554 179498554 C T TTN Silent p.L14224L 0.31 TCGA-DS-A7WH-01 2 25383899 25383899 C A POMC 3'UTR 0.32 TCGA-DS-A7WH-01 2 27317370 27317370 T C KHK Missense_Mutation p.Y79H 0.27 tolerated(0.21) benign(0.087) TCGA-DS-A7WH-01 2 32445705 32445705 C G SLC30A6 Missense_Mutation p.Q477E 0.47 tolerated_low_confidence(0.05) benign(0.012) TCGA-DS-A7WH-01 2 43452542 43452542 A T ZFP36L2 Missense_Mutation p.L134H 0.47 tolerated(0.1) probably_damaging(0.98) TCGA-DS-A7WH-01 2 61510366 61510366 G T USP34 Missense_Mutation p.H1638N 0.18 deleterious(0.02) benign(0.328) TCGA-DS-A7WH-01 2 85660240 85660240 G C SH2D6 5'Flank 0.24 TCGA-DS-A7WH-01 3 130279232 130279232 C T COL6A6 Silent p.L8L 0.19 TCGA-DS-A7WH-01 3 140401595 140401595 C T TRIM42 Silent p.H211H 0.12 TCGA-DS-A7WH-01 3 179501950 179501950 C T USP13 3'UTR 0.18 TCGA-DS-A7WH-01 3 195777390 195777390 G A TFRC 3'UTR 0.15 TCGA-DS-A7WH-01 3 40570895 40570895 G A ZNF621 Missense_Mutation p.G37E 0.27 deleterious(0) benign(0.061) TCGA-DS-A7WH-01 3 53226318 53226318 C T PRKCD 3'UTR 0.38 TCGA-DS-A7WH-01 4 110650839 110650839 G A PLA2G12A Missense_Mutation p.H43Y 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-DS-A7WH-01 4 140291474 140291474 G T NAA15 Missense_Mutation p.Q621H 0.30 deleterious(0.03) benign(0.078) TCGA-DS-A7WH-01 4 153896449 153896449 G A FHDC1 Missense_Mutation p.G669E 0.45 tolerated(0.06) benign(0.202) TCGA-DS-A7WH-01 4 153896463 153896463 G A FHDC1 Missense_Mutation p.E674K 0.46 tolerated(0.07) possibly_damaging(0.562) TCGA-DS-A7WH-01 4 169362599 169362599 C A DDX60L Missense_Mutation p.D395Y 0.18 tolerated(0.87) benign(0) TCGA-DS-A7WH-01 4 57355616 57355616 C T SRP72 Silent p.F429F 0.28 TCGA-DS-A7WH-01 4 7026927 7026927 G A TBC1D14 Missense_Mutation p.E652K 0.25 deleterious(0.02) benign(0.386) TCGA-DS-A7WH-01 5 110428130 110428130 G A WDR36 Silent p.L48L 0.38 TCGA-DS-A7WH-01 5 128440651 128440651 C G ISOC1 Silent p.L104L 0.48 TCGA-DS-A7WH-01 5 140214113 140214113 G A PCDHA7 Missense_Mutation p.A49T 0.31 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-DS-A7WH-01 5 140221358 140221358 G A PCDHA8 Missense_Mutation p.R151Q 0.39 deleterious_low_confidence(0.03) benign(0.042) TCGA-DS-A7WH-01 5 140870650 140870650 G T PCDHGC5 Missense_Mutation p.A615S 0.46 tolerated(0.13) benign(0.138) TCGA-DS-A7WH-01 5 142658932 142658932 G A NR3C1 3'Flank 0.33 TCGA-DS-A7WH-01 5 145198976 145198976 G A PRELID2 Missense_Mutation p.S70F 0.30 tolerated_low_confidence(0.71) benign(0.016) TCGA-DS-A7WH-01 5 146257654 146257654 G A PPP2R2B Intron 0.17 TCGA-DS-A7WH-01 5 176292672 176292672 C T UNC5A Intron 0.46 TCGA-DS-A7WH-01 5 176931139 176931139 C T DOK3 Missense_Mutation p.D446N 0.34 tolerated(0.13) benign(0.09) TCGA-DS-A7WH-01 5 71491138 71491138 G A MAP1B Silent p.E652E 0.16 TCGA-DS-A7WH-01 5 79278413 79278413 C T MTX3 3'UTR 0.33 TCGA-DS-A7WH-01 6 29796508 29796508 G A HLA-G Missense_Mutation p.E178K 0.36 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-DS-A7WH-01 6 31733689 31733689 G A VWA7 Missense_Mutation p.R824W 0.31 tolerated(0.06) benign(0.024) TCGA-DS-A7WH-01 6 33365938 33365938 G C KIFC1 Missense_Mutation p.E49Q 0.28 tolerated(0.16) benign(0.019) TCGA-DS-A7WH-01 6 41567472 41567472 G A FOXP4 3'UTR 0.46 TCGA-DS-A7WH-01 6 56417992 56417992 C - DST Frame_Shift_Del p.E2577Kfs*9 0.23 TCGA-DS-A7WH-01 6 70034857 70034857 G A BAI3 Missense_Mutation p.V970I 0.31 deleterious(0.05) probably_damaging(0.992) TCGA-DS-A7WH-01 6 88138520 88138520 G A C6ORF165 Silent p.V379V 0.19 TCGA-DS-A7WH-01 7 100482651 100482651 G T SRRT Missense_Mutation p.K383N 0.14 tolerated(0.15) benign(0.018) TCGA-DS-A7WH-01 7 105148719 105148719 C G PUS7 Missense_Mutation p.E81Q 0.48 tolerated(0.22) possibly_damaging(0.588) TCGA-DS-A7WH-01 7 113518156 113518156 G T PPP1R3A Missense_Mutation p.F997L 0.42 tolerated(0.3) benign(0.009) TCGA-DS-A7WH-01 7 123324335 123324335 C T WASL 3'UTR 0.50 TCGA-DS-A7WH-01 7 70257862 70257862 C T AUTS2 3'UTR 0.38 TCGA-DS-A7WH-01 8 143846091 143846091 G T LYNX1 Missense_Mutation p.P110T 0.36 tolerated(0.53) benign(0.029) TCGA-DS-A7WH-01 8 30701881 30701881 C T TEX15 Silent p.S1551S 0.07 TCGA-DS-A7WH-01 8 55533806 55533806 C T RP1 Missense_Mutation p.R94C 0.38 deleterious(0.05) benign(0.117) TCGA-DS-A7WH-01 8 86240767 86240767 G A CA1 3'UTR 0.35 TCGA-DS-A7WH-01 9 117553053 117553053 T C TNFSF15 Silent p.G145G 0.26 TCGA-DS-A7WH-01 9 131592044 131592044 T A C9orf114 Missense_Mutation p.R6W 0.24 deleterious_low_confidence(0.01) benign(0.103) TCGA-DS-A7WH-01 9 28295364 28295364 C A LINGO2 Intron 0.32 TCGA-DS-A7WH-01 X 101139637 101139637 T A ZMAT1 Missense_Mutation p.R254S 0.24 tolerated(0.14) benign(0.055) TCGA-DS-A7WH-01 X 110496436 110496436 G A CAPN6 Silent p.P102P 0.38 TCGA-DS-A7WH-01 X 114424169 114424169 C T RBMXL3 Silent p.T55T 0.24 TCGA-DS-A7WH-01 X 153677568 153677568 G A FAM50A Splice_Site p.X217_splice 0.37 TCGA-DS-A7WH-01 X 44971756 44971756 G A KDM6A 3'UTR 0.27 TCGA-DS-A7WH-01 X 63409392 63409392 G A AMER1 3'UTR 0.11 TCGA-DS-A7WH-01 X 72299335 72299335 T C PABPC1L2A 5'UTR 0.27 TCGA-DS-A7WH-01 X 76763049 76763049 T A ATRX 3'UTR 0.23 TCGA-DS-A7WH-01 X 79278734 79278734 G A TBX22 Silent p.A117A 0.31 TCGA-DS-A7WI-01 10 90611478 90611478 C A ANKRD22 5'UTR 0.37 TCGA-DS-A7WI-01 11 64693304 64693304 G A PPP2R5B Missense_Mutation p.R33H 0.19 tolerated(0.12) probably_damaging(0.964) TCGA-DS-A7WI-01 11 65563649 65563649 T A OVOL1 3'UTR 0.13 TCGA-DS-A7WI-01 11 72308582 72308582 C A PDE2A Silent p.L135L 0.29 TCGA-DS-A7WI-01 13 88331868 88331868 C A SLITRK5 3'UTR 0.18 TCGA-DS-A7WI-01 15 35271213 35271213 G A AC114546.1 5'UTR 0.41 TCGA-DS-A7WI-01 15 41165482 41165482 C A RHOV Missense_Mutation p.R162L 0.39 deleterious(0.03) benign(0.259) TCGA-DS-A7WI-01 15 48058809 48058809 A C SEMA6D Intron 0.31 TCGA-DS-A7WI-01 15 86123232 86123232 C T AKAP13 Nonsense_Mutation p.Q645* 0.27 TCGA-DS-A7WI-01 16 11275875 11275875 G A CLEC16A 3'UTR 0.54 TCGA-DS-A7WI-01 16 17353101 17353101 G A XYLT1 Silent p.P219P 0.38 TCGA-DS-A7WI-01 16 21458484 21458484 C T CTD-2547E10.2 RNA 0.12 TCGA-DS-A7WI-01 16 27472852 27472852 C T GTF3C1 Missense_Mutation p.R2050H 0.37 tolerated(0.14) possibly_damaging(0.65) TCGA-DS-A7WI-01 16 9856134 9856134 C T GRIN2A 3'UTR 0.13 TCGA-DS-A7WI-01 17 10547729 10547729 G A MYH3 Missense_Mutation p.T450M 0.37 deleterious(0) probably_damaging(0.999) TCGA-DS-A7WI-01 17 13504142 13504142 G T HS3ST3A1 Missense_Mutation p.P102H 0.29 deleterious_low_confidence(0.01) benign(0.326) TCGA-DS-A7WI-01 17 45197722 45197722 C G CDC27 3'UTR 0.34 TCGA-DS-A7WI-01 17 6930847 6930847 G A BCL6B Missense_Mutation p.R450Q 0.25 deleterious(0) probably_damaging(0.986) TCGA-DS-A7WI-01 17 9939844 9939844 G A GAS7 Intron 0.33 TCGA-DS-A7WI-01 18 47429165 47429165 G A MYO5B Silent p.H870H 0.39 TCGA-DS-A7WI-01 19 12461054 12461054 G A ZNF442 Nonsense_Mutation p.R449* 0.42 TCGA-DS-A7WI-01 19 1853834 1853834 C A KLF16 3'UTR 0.63 TCGA-DS-A7WI-01 19 21606544 21606544 C T ZNF493 Silent p.S361S 0.31 TCGA-DS-A7WI-01 19 31770279 31770279 C T TSHZ3 Silent p.Q140Q 0.11 TCGA-DS-A7WI-01 19 37039059 37039059 G A ZNF529 Missense_Mutation p.P134L 0.25 tolerated(0.41) benign(0.393) TCGA-DS-A7WI-01 19 51837453 51837453 C T VSIG10L Missense_Mutation p.R804H 0.66 tolerated(0.49) benign(0.016) TCGA-DS-A7WI-01 19 52329031 52329039 TGGGTGTTA - FPR3 3'UTR 0.62 TCGA-DS-A7WI-01 19 7172413 7172413 C T INSR Missense_Mutation p.G386S 0.37 tolerated(0.1) probably_damaging(1) TCGA-DS-A7WI-01 19 8503622 8503622 T G MARCH2 3'UTR 0.11 TCGA-DS-A7WI-01 1 53553574 53553574 A C SLC1A7 3'UTR 0.44 TCGA-DS-A7WI-01 22 32853350 32853350 G T BPIFC Silent p.V8V 0.35 TCGA-DS-A7WI-01 22 46319122 46319122 G A WNT7B Nonsense_Mutation p.R222* 0.19 TCGA-DS-A7WI-01 22 50989287 50989287 G A KLHDC7B 3'UTR 0.45 TCGA-DS-A7WI-01 2 198571412 198571412 G A MARS2 Missense_Mutation p.C428Y 0.65 tolerated(0.55) benign(0.125) TCGA-DS-A7WI-01 2 202149755 202149755 T G CASP8 Missense_Mutation p.F399C 0.58 deleterious(0) probably_damaging(1) TCGA-DS-A7WI-01 2 230660005 230660006 - C TRIP12 Frame_Shift_Ins p.N1212* 0.44 TCGA-DS-A7WI-01 3 167508283 167508283 T G SERPINI1 Missense_Mutation p.L125W 0.10 deleterious(0) probably_damaging(0.999) TCGA-DS-A7WI-01 6 2116041 2116041 T A GMDS Silent p.T103T 0.33 TCGA-DS-A7WI-01 6 21597404 21597404 A C SOX4 3'UTR 0.37 TCGA-DS-A7WI-01 6 88767424 88767424 T C SPACA1 Silent p.D120D 0.37 TCGA-DS-A7WI-01 6 99881131 99881131 A G USP45 3'UTR 0.31 TCGA-DS-A7WI-01 7 144060304 144060304 G C ARHGEF5 Missense_Mutation p.R181T 0.12 tolerated(0.61) benign(0.003) TCGA-DS-A7WI-01 8 110417308 110417308 A T PKHD1L1 Missense_Mutation p.N540Y 0.39 tolerated(0.06) benign(0.11) TCGA-DS-A7WI-01 8 89053808 89053808 T G MMP16 Missense_Mutation p.I569L 0.24 tolerated(0.26) probably_damaging(0.996) TCGA-DS-A7WI-01 9 107331533 107331533 G A OR13C8 Missense_Mutation p.V29I 0.26 deleterious(0.04) benign(0.044) TCGA-DS-A7WI-01 X 101821927 101821927 G C NXF4 RNA 0.42 TCGA-DS-A7WI-01 X 123195682 123195682 G A STAG2 Silent p.A532A 0.19 TCGA-DS-A7WI-01 X 6069278 6069278 G T NLGN4X Missense_Mutation p.P77H 0.47 deleterious(0) probably_damaging(0.999) TCGA-DS-A7WI-01 X 69670051 69670051 A C DLG3 Missense_Mutation p.N246H 0.20 deleterious(0.02) benign(0.314) TCGA-DS-A7WI-01 X 9864525 9864525 G T SHROOM2 Missense_Mutation p.E859D 0.38 tolerated(0.61) benign(0.01) TCGA-DS-A7WI-01 X 9864526 9864526 A G SHROOM2 Missense_Mutation p.K860E 0.38 deleterious(0.05) benign(0.011) TCGA-EA-A1QS-01 10 21959589 21959589 G C MLLT10 Missense_Mutation p.R336T 0.17 tolerated(0.18) benign(0.445) TCGA-EA-A1QS-01 10 31799694 31799694 G A ZEB1 Missense_Mutation p.R193H 0.15 deleterious(0) probably_damaging(0.999) TCGA-EA-A1QS-01 11 118461072 118461072 G A ARCN1 Missense_Mutation p.E279K 0.14 deleterious(0) probably_damaging(0.973) TCGA-EA-A1QS-01 11 17452295 17452295 C G ABCC8 Intron 0.18 TCGA-EA-A1QS-01 11 2325404 2325404 C T TSPAN32 Silent p.T83T 0.07 TCGA-EA-A1QS-01 11 33090344 33090344 C T TCP11L1 Silent p.T422T 0.12 TCGA-EA-A1QS-01 11 43365328 43365328 G A API5 3'Flank 0.09 TCGA-EA-A1QS-01 11 59568498 59568498 G A STX3 3'UTR 0.10 TCGA-EA-A1QS-01 11 61507102 61507102 G A DAGLA Missense_Mutation p.V608M 0.13 deleterious(0) probably_damaging(0.996) TCGA-EA-A1QS-01 11 76061085 76061085 A C PRKRIR 3'UTR 0.18 TCGA-EA-A1QS-01 12 122687969 122687969 C G LRRC43 Missense_Mutation p.L651V 0.21 tolerated(0.09) possibly_damaging(0.607) TCGA-EA-A1QS-01 12 2910358 2910358 G A FKBP4 Missense_Mutation p.E370K 0.12 deleterious(0.04) possibly_damaging(0.531) TCGA-EA-A1QS-01 14 101402840 101402840 G A SNORD113-4 RNA 0.10 TCGA-EA-A1QS-01 14 105848350 105848350 C T PACS2 Silent p.N456N 0.15 TCGA-EA-A1QS-01 14 50361343 50361343 G C ARF6 3'UTR 0.23 TCGA-EA-A1QS-01 14 91943285 91943285 C T SMEK1 Missense_Mutation p.E321K 0.11 tolerated(0.54) benign(0.4) TCGA-EA-A1QS-01 15 73866061 73866061 G A NPTN Missense_Mutation p.S261L 0.10 deleterious(0) possibly_damaging(0.695) TCGA-EA-A1QS-01 15 96877515 96877515 G A NR2F2 Missense_Mutation p.R218K 0.14 tolerated(0.07) probably_damaging(0.942) TCGA-EA-A1QS-01 16 1259397 1259397 C T CACNA1H Silent p.D1243D 0.08 TCGA-EA-A1QS-01 16 23080464 23080464 G C USP31 Missense_Mutation p.Q988E 0.10 tolerated_low_confidence(0.2) benign(0.074) TCGA-EA-A1QS-01 16 50744657 50744657 G C NOD2 Missense_Mutation p.E279Q 0.28 tolerated(0.13) possibly_damaging(0.544) TCGA-EA-A1QS-01 16 69373946 69373946 G C NIP7 Missense_Mutation p.D32H 0.08 deleterious(0) probably_damaging(0.974) TCGA-EA-A1QS-01 16 82033756 82033756 G A SDR42E1 Missense_Mutation p.P48S 0.07 tolerated(0.11) possibly_damaging(0.817) TCGA-EA-A1QS-01 16 88601430 88601430 G A ZFPM1 3'UTR 0.25 TCGA-EA-A1QS-01 17 39406590 39406590 C T KRTAP9-4 3'UTR 0.07 TCGA-EA-A1QS-01 17 74001407 74001407 G A CDK3 Missense_Mutation p.R274Q 0.08 deleterious(0.01) possibly_damaging(0.835) TCGA-EA-A1QS-01 19 19043828 19043828 G A HOMER3 Silent p.A146A 0.30 TCGA-EA-A1QS-01 19 34263497 34263497 C T CHST8 Silent p.F268F 0.25 TCGA-EA-A1QS-01 19 35176129 35176129 C G ZNF302 Missense_Mutation p.P396R 0.20 deleterious(0) probably_damaging(0.991) TCGA-EA-A1QS-01 19 38905607 38905607 C T RASGRP4 Missense_Mutation p.D371N 0.16 tolerated(0.11) probably_damaging(1) TCGA-EA-A1QS-01 19 40097960 40097960 C T LGALS13 Missense_Mutation p.S134L 0.09 deleterious(0) possibly_damaging(0.461) TCGA-EA-A1QS-01 19 50550227 50550227 C T ZNF473 Nonsense_Mutation p.Q843* 0.12 TCGA-EA-A1QS-01 19 57839193 57839193 C G ZNF543 Silent p.S121S 0.11 TCGA-EA-A1QS-01 1 150933493 150933493 G C SETDB1 Missense_Mutation p.L985F 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-EA-A1QS-01 1 152278793 152278793 G A FLG Missense_Mutation p.R2857C 0.04 benign(0.058) TCGA-EA-A1QS-01 1 154320997 154320997 C A ATP8B2 Missense_Mutation p.P1126T 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-EA-A1QS-01 1 156669768 156669768 G A CRABP2 3'UTR 0.21 TCGA-EA-A1QS-01 1 15773143 15773143 C T CTRC 3'UTR 0.06 TCGA-EA-A1QS-01 1 16268666 16268666 C T ZBTB17 Missense_Mutation p.R737Q 0.08 deleterious(0) probably_damaging(0.986) TCGA-EA-A1QS-01 1 16957557 16957557 G A CROCCP2 RNA 0.07 TCGA-EA-A1QS-01 1 169811612 169811612 G A C1orf112 Missense_Mutation p.D594N 0.09 deleterious(0.01) possibly_damaging(0.877) TCGA-EA-A1QS-01 1 2087470 2087470 G C PRKCZ Missense_Mutation p.E305Q 0.06 tolerated(0.22) probably_damaging(0.919) TCGA-EA-A1QS-01 1 225684893 225684893 C T ENAH 3'UTR 0.09 TCGA-EA-A1QS-01 1 232944617 232944617 G A MAP10 3'UTR 0.14 TCGA-EA-A1QS-01 1 23381588 23381588 C A KDM1A Missense_Mutation p.H273N 0.24 deleterious(0) probably_damaging(0.99) TCGA-EA-A1QS-01 1 237532889 237532889 G A RYR2 Missense_Mutation p.R122H 0.14 possibly_damaging(0.588) TCGA-EA-A1QS-01 1 237758810 237758810 C A RYR2 Missense_Mutation p.S1483R 0.12 possibly_damaging(0.56) TCGA-EA-A1QS-01 1 44462347 44462347 C G SLC6A9 3'Flank 0.06 TCGA-EA-A1QS-01 1 94018058 94018058 C G FNBP1L 3'UTR 0.06 TCGA-EA-A1QS-01 20 61473404 61473404 G A TCFL5 Silent p.L476L 0.25 TCGA-EA-A1QS-01 21 43833527 43833527 G A UBASH3A Missense_Mutation p.V188I 0.06 tolerated(0.25) benign(0) TCGA-EA-A1QS-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.10 deleterious(0) probably_damaging(0.999) TCGA-EA-A1QS-01 22 42952413 42952413 C T SERHL2 Intron 0.07 TCGA-EA-A1QS-01 2 109605754 109605754 G C EDAR 5'UTR 0.16 TCGA-EA-A1QS-01 2 114218282 114218282 C G CBWD2 Missense_Mutation p.I187M 0.05 tolerated(0.27) benign(0.297) TCGA-EA-A1QS-01 2 11905772 11905772 C T LPIN1 Silent p.V84V 0.08 TCGA-EA-A1QS-01 2 176982219 176982219 G A HOXD10 Missense_Mutation p.E220K 0.08 tolerated(0.4) benign(0.162) TCGA-EA-A1QS-01 2 179579022 179579022 G A TTN Missense_Mutation p.L8827F 0.12 TCGA-EA-A1QS-01 2 180448702 180448702 C T ZNF385B Intron 0.05 TCGA-EA-A1QS-01 2 185804192 185804192 A C ZNF804A 3'UTR 0.09 TCGA-EA-A1QS-01 2 204299620 204299620 G A ABI2 3'Flank 0.11 TCGA-EA-A1QS-01 2 220087167 220087167 C G ATG9A Silent p.L618L 0.12 TCGA-EA-A1QS-01 3 10264417 10264417 A T IRAK2 Nonsense_Mutation p.K371* 0.07 TCGA-EA-A1QS-01 3 10858057 10858057 C T SLC6A11 Missense_Mutation p.A36V 0.17 tolerated(0.35) benign(0) TCGA-EA-A1QS-01 3 122003307 122003307 G A CASR Missense_Mutation p.V846I 0.07 deleterious(0) probably_damaging(0.978) TCGA-EA-A1QS-01 3 138763254 138763254 C T PRR23C Missense_Mutation p.R70H 0.55 tolerated(0.5) possibly_damaging(0.708) TCGA-EA-A1QS-01 3 156271537 156271537 A G SSR3 Missense_Mutation p.I56T 0.07 tolerated(0.35) benign(0.011) TCGA-EA-A1QS-01 3 158399824 158399824 C T GFM1 Nonsense_Mutation p.Q548* 0.08 TCGA-EA-A1QS-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.08 deleterious(0.04) probably_damaging(0.96) TCGA-EA-A1QS-01 3 185363090 185363090 C T IGF2BP2 3'UTR 0.44 TCGA-EA-A1QS-01 3 42794151 42794151 C G CCDC13 Missense_Mutation p.K143N 0.10 deleterious(0) possibly_damaging(0.725) TCGA-EA-A1QS-01 3 48725981 48725981 C T IP6K2 Missense_Mutation p.D336N 0.10 deleterious(0.02) benign(0.269) TCGA-EA-A1QS-01 4 187540391 187540391 G C FAT1 Nonsense_Mutation p.S2450* 0.25 TCGA-EA-A1QS-01 4 20715122 20715122 G C PACRGL Missense_Mutation p.G190A 0.19 deleterious(0) probably_damaging(0.999) TCGA-EA-A1QS-01 4 40119486 40119486 C G N4BP2 Intron 0.24 TCGA-EA-A1QS-01 5 140174465 140174465 G T PCDHA2 5'Flank 0.20 TCGA-EA-A1QS-01 5 140482363 140482363 G A PCDHB3 Silent p.A710A 0.05 TCGA-EA-A1QS-01 5 149429857 149429857 C T HMGXB3 Missense_Mutation p.R1082C 0.12 deleterious(0) probably_damaging(0.932) TCGA-EA-A1QS-01 5 78938652 78938652 C T PAPD4 Intron 0.15 TCGA-EA-A1QS-01 6 148664255 148664255 G C SASH1 Missense_Mutation p.E18Q 0.29 tolerated_low_confidence(0.45) unknown(0) TCGA-EA-A1QS-01 6 170889128 170889128 G C PDCD2 Missense_Mutation p.Q242E 0.08 tolerated(0.06) benign(0.213) TCGA-EA-A1QS-01 6 32029988 32029988 A C TNXB Missense_Mutation p.Y2372D 0.09 probably_damaging(0.996) TCGA-EA-A1QS-01 6 87965710 87965710 G A ZNF292 Missense_Mutation p.R788K 0.21 tolerated(0.37) benign(0.443) TCGA-EA-A1QS-01 7 5331371 5331371 G A SLC29A4 Missense_Mutation p.V155M 0.09 deleterious(0) possibly_damaging(0.669) TCGA-EA-A1QS-01 7 64452777 64452777 G C ERV3-1 Missense_Mutation p.P210A 0.23 tolerated(0.19) possibly_damaging(0.747) TCGA-EA-A1QS-01 8 125487417 125487417 G A RNF139 Missense_Mutation p.E23K 0.09 deleterious(0.01) possibly_damaging(0.615) TCGA-EA-A1QS-01 8 143425707 143425707 T C TSNARE1 Missense_Mutation p.K122R 0.07 tolerated_low_confidence(0.07) benign(0.028) TCGA-EA-A1QS-01 8 182347 182347 G C ZNF596 5'Flank 0.40 TCGA-EA-A1QS-01 8 38948831 38948831 G T ADAM9 Missense_Mutation p.R755L 0.18 tolerated(0.15) benign(0.082) TCGA-EA-A1QS-01 9 129157890 129157890 C G MVB12B Silent p.G192G 0.09 TCGA-EA-A1QS-01 9 35064274 35064274 T A VCP Missense_Mutation p.E195D 0.15 tolerated(0.21) benign(0.007) TCGA-EA-A1QS-01 9 37588868 37588868 C T TOMM5 3'UTR 0.09 TCGA-EA-A1QS-01 X 128963021 128963021 G A ZDHHC9 Silent p.F88F 0.19 TCGA-EA-A1QS-01 X 153588613 153588613 C G FLNA Missense_Mutation p.D1184H 0.06 deleterious(0) probably_damaging(0.999) TCGA-EA-A1QS-01 X 85769284 85769284 C G DACH2 Nonsense_Mutation p.S177* 0.14 TCGA-EA-A1QT-01 10 111987978 111987978 G A MXI1 Silent p.P102P 0.41 TCGA-EA-A1QT-01 10 29581549 29581549 G A LYZL1 Missense_Mutation p.A127T 0.41 tolerated(0.48) benign(0) TCGA-EA-A1QT-01 10 38403718 38403718 C T ZNF37A Silent p.F17F 0.39 TCGA-EA-A1QT-01 10 4889748 4889748 C G AKR1E2 3'UTR 0.26 TCGA-EA-A1QT-01 10 68979626 68979626 G T CTNNA3 Missense_Mutation p.D194E 0.35 tolerated(0.59) benign(0.286) TCGA-EA-A1QT-01 10 72434400 72434400 G A ADAMTS14 Silent p.V57V 0.08 TCGA-EA-A1QT-01 10 81272946 81272946 G T EIF5AL1 3'UTR 0.16 TCGA-EA-A1QT-01 11 1078304 1078304 G A MUC2 Silent p.Q197Q 0.85 TCGA-EA-A1QT-01 11 30034064 30034064 G A KCNA4 Silent p.S54S 0.17 TCGA-EA-A1QT-01 11 56344766 56344766 C A OR5M10 Silent p.L144L 0.35 TCGA-EA-A1QT-01 11 60703567 60703567 C T TMEM132A Missense_Mutation p.R755C 0.27 deleterious(0) probably_damaging(0.931) TCGA-EA-A1QT-01 11 70279767 70279767 G A CTTN Missense_Mutation p.D450N 0.23 tolerated(0.06) benign(0.382) TCGA-EA-A1QT-01 12 129467532 129467532 T A GLT1D1 Missense_Mutation p.V233E 0.39 deleterious(0) possibly_damaging(0.607) TCGA-EA-A1QT-01 12 16043528 16043528 C G STRAP Intron 0.79 TCGA-EA-A1QT-01 12 50027802 50027802 G A PRPF40B Missense_Mutation p.D247N 0.51 tolerated(0.44) benign(0.135) TCGA-EA-A1QT-01 12 54764853 54764853 G A ZNF385A Missense_Mutation p.A231V 0.41 deleterious(0) probably_damaging(0.999) TCGA-EA-A1QT-01 12 57559991 57559991 A G LRP1 Silent p.S932S 0.25 TCGA-EA-A1QT-01 12 73057015 73057015 T C TRHDE 3'UTR 0.48 TCGA-EA-A1QT-01 12 9089894 9089894 G A PHC1 Missense_Mutation p.R867H 0.86 deleterious(0.04) unknown(0) TCGA-EA-A1QT-01 13 67800080 67800080 G A PCDH9 Silent p.F831F 0.73 TCGA-EA-A1QT-01 14 20818765 20818765 G C PARP2 Missense_Mutation p.W148C 0.49 deleterious(0) probably_damaging(1) TCGA-EA-A1QT-01 14 24677393 24677393 A T TSSK4 3'UTR 0.27 TCGA-EA-A1QT-01 14 69259779 69259779 G A ZFP36L1 5'UTR 0.40 TCGA-EA-A1QT-01 15 45047237 45047237 G A TRIM69 Missense_Mutation p.R49Q 0.42 tolerated(0.21) benign(0.371) TCGA-EA-A1QT-01 15 79760682 79760682 G A KIAA1024 Missense_Mutation p.V903I 0.50 tolerated(0.2) probably_damaging(0.999) TCGA-EA-A1QT-01 15 90770837 90770837 C T SEMA4B Silent p.S579S 0.07 TCGA-EA-A1QT-01 16 1397928 1397928 G A BAIAP3 Missense_Mutation p.G1055D 0.40 tolerated(0.07) probably_damaging(0.963) TCGA-EA-A1QT-01 16 3786138 3786138 C G CREBBP Missense_Mutation p.D1543H 0.39 unknown(0) TCGA-EA-A1QT-01 16 55886941 55886941 C T CES5A Splice_Site p.X405_splice 0.81 TCGA-EA-A1QT-01 16 70301613 70301613 G A AARS Missense_Mutation p.R391C 0.38 deleterious(0) probably_damaging(0.956) TCGA-EA-A1QT-01 16 72107831 72107831 C A HPR Missense_Mutation p.Q16K 0.42 deleterious_low_confidence(0.04) benign(0.184) TCGA-EA-A1QT-01 17 4098307 4098307 G A ANKFY1 Silent p.R488R 0.78 TCGA-EA-A1QT-01 18 39593447 39593447 A C PIK3C3 Missense_Mutation p.K404N 0.75 deleterious(0) probably_damaging(0.973) TCGA-EA-A1QT-01 19 15355409 15355409 G C BRD4 Missense_Mutation p.H738Q 0.49 benign(0.227) TCGA-EA-A1QT-01 19 17108023 17108023 G A CPAMD8 Silent p.V378V 0.45 TCGA-EA-A1QT-01 19 21991572 21991572 C T ZNF43 Missense_Mutation p.E423K 0.08 deleterious(0.04) probably_damaging(0.977) TCGA-EA-A1QT-01 19 23542271 23542271 C T ZNF91 Silent p.A1170A 0.45 TCGA-EA-A1QT-01 19 49850490 49850490 T C TEAD2 Missense_Mutation p.Y293C 0.34 deleterious(0.04) benign(0.132) TCGA-EA-A1QT-01 19 7584342 7584342 G T ZNF358 Missense_Mutation p.D72Y 0.36 deleterious(0.01) benign(0.16) TCGA-EA-A1QT-01 1 120437902 120437902 C T ADAM30 Missense_Mutation p.C353Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-EA-A1QT-01 1 147230802 147230802 A C GJA5 Missense_Mutation p.L182R 0.27 deleterious(0) possibly_damaging(0.612) TCGA-EA-A1QT-01 1 157773703 157773703 T C FCRL1 Missense_Mutation p.Y84C 0.49 deleterious(0) probably_damaging(1) TCGA-EA-A1QT-01 1 167871064 167871064 C T ADCY10 Intron 0.45 TCGA-EA-A1QT-01 1 17085322 17085322 C T MST1L RNA 0.17 TCGA-EA-A1QT-01 1 171755064 171755064 G C METTL13 Missense_Mutation p.G320A 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-EA-A1QT-01 1 204380406 204380406 G C PPP1R15B Missense_Mutation p.S45C 0.40 deleterious_low_confidence(0.05) benign(0.016) TCGA-EA-A1QT-01 1 212798889 212798889 C T FAM71A Missense_Mutation p.L224F 0.45 tolerated(0.1) benign(0.191) TCGA-EA-A1QT-01 1 52891171 52891171 A C ZCCHC11 Missense_Mutation p.F1574V 0.35 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EA-A1QT-01 1 74835136 74835136 A G FPGT-TNNI3K Missense_Mutation p.I626V 0.23 deleterious(0.02) possibly_damaging(0.777) TCGA-EA-A1QT-01 1 89659022 89659022 A G GBP4 Missense_Mutation p.V146A 0.48 deleterious(0) benign(0.232) TCGA-EA-A1QT-01 1 89875908 89875908 A G GBP1P1 RNA 0.48 TCGA-EA-A1QT-01 20 21687618 21687618 G C PAX1 Missense_Mutation p.A277P 0.78 tolerated(0.36) benign(0.013) TCGA-EA-A1QT-01 22 19221125 19221125 C A CLTCL1 Missense_Mutation p.E396D 0.47 tolerated(0.63) benign(0.003) TCGA-EA-A1QT-01 2 179440160 179440160 A T TTN Missense_Mutation p.Y23567N 0.48 TCGA-EA-A1QT-01 2 193059224 193059224 C T TMEFF2 Silent p.Q9Q 0.37 TCGA-EA-A1QT-01 2 212248574 212248574 C G ERBB4 Missense_Mutation p.E1231D 0.77 tolerated(0.43) benign(0.001) TCGA-EA-A1QT-01 2 228564076 228564076 C T SLC19A3 Missense_Mutation p.A119T 0.84 tolerated(1) benign(0.002) TCGA-EA-A1QT-01 2 38537520 38537520 C G ATL2 Missense_Mutation p.G292R 0.19 tolerated(0.14) benign(0.1) TCGA-EA-A1QT-01 2 73285676 73285676 C T SFXN5 Missense_Mutation p.R51H 0.36 deleterious(0) probably_damaging(0.956) TCGA-EA-A1QT-01 3 140401821 140401821 G A TRIM42 Missense_Mutation p.E287K 0.33 deleterious(0.03) probably_damaging(0.971) TCGA-EA-A1QT-01 3 141163784 141163784 C G ZBTB38 Missense_Mutation p.H852D 0.07 deleterious(0) possibly_damaging(0.625) TCGA-EA-A1QT-01 3 156249272 156249272 C T KCNAB1 Missense_Mutation p.L386F 0.62 tolerated(0.06) probably_damaging(0.948) TCGA-EA-A1QT-01 3 164907457 164907457 A C SLITRK3 Missense_Mutation p.L388V 0.14 deleterious(0.01) possibly_damaging(0.872) TCGA-EA-A1QT-01 3 183273417 183273417 C T KLHL6 Missense_Mutation p.A9T 0.38 tolerated_low_confidence(1) benign(0.017) TCGA-EA-A1QT-01 3 196304665 196304665 C T FBXO45 Silent p.N220N 0.34 TCGA-EA-A1QT-01 4 79373445 79373445 G A FRAS1 Missense_Mutation p.E2234K 0.93 benign(0.006) TCGA-EA-A1QT-01 4 79475618 79475618 G T ANXA3 5'UTR 0.41 TCGA-EA-A1QT-01 5 140908362 140908362 A - DIAPH1 Frame_Shift_Del p.L976Sfs*2 0.08 TCGA-EA-A1QT-01 5 176687059 176687059 C G NSD1 Nonsense_Mutation p.S1679* 0.81 TCGA-EA-A1QT-01 5 41176763 41176763 T A C6 Nonsense_Mutation p.K328* 0.46 TCGA-EA-A1QT-01 6 162864488 162864488 A C PARK2 Missense_Mutation p.S9A 0.73 tolerated(0.12) probably_damaging(0.996) TCGA-EA-A1QT-01 6 31322921 31322939 AGCTCCGATGACCACAACT - HLA-B Frame_Shift_Del p.V320Wfs*5 0.26 TCGA-EA-A1QT-01 6 32190320 32190320 C T NOTCH4 Missense_Mutation p.R140H 0.33 tolerated(0.55) benign(0.003) TCGA-EA-A1QT-01 6 83904315 83904315 G A RWDD2A Missense_Mutation p.E49K 0.71 tolerated(0.22) benign(0.139) TCGA-EA-A1QT-01 7 100732123 100732123 C T TRIM56 Silent p.I510I 0.35 TCGA-EA-A1QT-01 7 117417782 117417782 C T CTTNBP2 Missense_Mutation p.G854D 0.43 tolerated(0.15) possibly_damaging(0.766) TCGA-EA-A1QT-01 7 140482933 140482933 G A BRAF Missense_Mutation p.T401I 0.38 tolerated(0.08) benign(0.115) TCGA-EA-A1QT-01 7 20685645 20685645 G T ABCB5 Missense_Mutation p.V289L 0.37 tolerated(0.87) benign(0.001) TCGA-EA-A1QT-01 7 75896635 75896635 G A SRRM3 Missense_Mutation p.S297N 0.29 deleterious(0) unknown(0) TCGA-EA-A1QT-01 8 11162520 11162520 G A MTMR9 Silent p.G196G 0.85 TCGA-EA-A1QT-01 8 53092776 53092776 G C ST18 Silent p.P61P 0.42 TCGA-EA-A1QT-01 8 82586095 82586095 T C IMPA1 Silent p.L205L 0.48 TCGA-EA-A1QT-01 9 133753889 133753891 AGA - ABL1 In_Frame_Del p.K473del 0.37 TCGA-EA-A1QT-01 X 103430825 103430825 C G FAM199X Missense_Mutation p.L166V 0.38 tolerated(0.64) benign(0.001) TCGA-EA-A1QT-01 X 123525989 123525989 A T TENM1 Missense_Mutation p.N1867K 0.36 deleterious(0.01) benign(0.002) TCGA-EA-A1QT-01 X 12828219 12828219 T A PRPS2 Missense_Mutation p.W165R 0.37 tolerated(0.08) probably_damaging(0.95) TCGA-EA-A1QT-01 X 135428590 135428590 A T GPR112 Missense_Mutation p.S909C 0.39 deleterious(0) possibly_damaging(0.87) TCGA-EA-A1QT-01 X 19378902 19378902 C T MAP3K15 Missense_Mutation p.A1303T 0.41 tolerated(0.75) benign(0.004) TCGA-EA-A1QT-01 X 35974251 35974251 A G CXorf22 Missense_Mutation p.K450E 0.44 tolerated(0.17) benign(0.004) TCGA-EA-A1QT-01 X 69479287 69479287 C T P2RY4 Missense_Mutation p.R63H 0.38 tolerated(0.08) benign(0.045) TCGA-EA-A1QT-01 X 91873845 91873845 C T PCDH11X Missense_Mutation p.S1317L 0.33 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EA-A1QT-01 X 99943257 99943257 T C SYTL4 Intron 0.40 TCGA-EA-A3HQ-01 10 116060344 116060344 G A AFAP1L2 Missense_Mutation p.P550S 0.42 tolerated(0.5) benign(0.001) TCGA-EA-A3HQ-01 10 28821811 28821811 G A WAC 5'Flank 0.34 TCGA-EA-A3HQ-01 10 299490 299490 G A ZMYND11 3'UTR 0.30 TCGA-EA-A3HQ-01 10 50854596 50854596 G T CHAT Missense_Mutation p.C386F 0.37 tolerated(0.52) benign(0.107) TCGA-EA-A3HQ-01 10 5248280 5248280 G A AKR1C4 Missense_Mutation p.G164R 0.39 deleterious(0.02) probably_damaging(1) TCGA-EA-A3HQ-01 10 68685885 68685885 C T LRRTM3 5'UTR 0.36 TCGA-EA-A3HQ-01 10 79551667 79551667 G A DLG5 3'UTR 0.47 TCGA-EA-A3HQ-01 10 85974456 85974456 C T CDHR1 3'UTR 0.36 TCGA-EA-A3HQ-01 11 108165674 108165677 AGTA - ATM Frame_Shift_Del p.S1601Ffs*7 0.51 TCGA-EA-A3HQ-01 11 117329618 117329618 G A DSCAML1 Silent p.G1200G 0.42 TCGA-EA-A3HQ-01 11 45793851 45793851 T C CTD-2210P24.4 3'UTR 0.34 TCGA-EA-A3HQ-01 11 61291299 61291299 C A SYT7 Missense_Mutation p.D378Y 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-EA-A3HQ-01 11 65409844 65409844 C T SIPA1 Missense_Mutation p.T268M 0.46 deleterious(0) probably_damaging(0.931) TCGA-EA-A3HQ-01 11 65793015 65793017 TGG - CATSPER1 In_Frame_Del p.H279del 0.49 TCGA-EA-A3HQ-01 11 65793147 65793155 TGGGCTTCA - CATSPER1 In_Frame_Del p.E233_H235del 0.44 TCGA-EA-A3HQ-01 11 68197163 68197163 G A LRP5 Missense_Mutation p.C1253Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HQ-01 11 7110302 7110302 G A RBMXL2 5'UTR 0.38 TCGA-EA-A3HQ-01 11 89443705 89443705 C T TRIM77 Missense_Mutation p.S80L 0.39 deleterious(0.02) possibly_damaging(0.74) TCGA-EA-A3HQ-01 12 107155511 107155511 G A RFX4 3'Flank 0.27 TCGA-EA-A3HQ-01 12 110238497 110238497 T C TRPV4 Missense_Mutation p.Q260R 0.39 tolerated(0.21) benign(0.003) TCGA-EA-A3HQ-01 12 11461645 11461645 C A PRB4 Missense_Mutation p.G91V 0.37 deleterious_low_confidence(0.01) unknown(0) TCGA-EA-A3HQ-01 12 123706363 123706363 G A MPHOSPH9 5'UTR 0.42 TCGA-EA-A3HQ-01 12 49434580 49434580 C T KMT2D Missense_Mutation p.D2325N 0.30 benign(0.376) TCGA-EA-A3HQ-01 12 54115347 54115347 C T CALCOCO1 Missense_Mutation p.R221Q 0.42 tolerated(0.63) benign(0.002) TCGA-EA-A3HQ-01 12 7343091 7343092 - GGCCCCC PEX5 Frame_Shift_Ins p.G43Afs*8 0.15 TCGA-EA-A3HQ-01 13 38145528 38145528 T C POSTN Silent p.T719T 0.39 TCGA-EA-A3HQ-01 13 48955382 48955382 G C RB1 Splice_Site p.X500_splice 0.65 TCGA-EA-A3HQ-01 13 50206533 50206533 C T ARL11 3'UTR 0.77 TCGA-EA-A3HQ-01 13 66879055 66879055 C T PCDH9 Missense_Mutation p.G1149D 0.72 deleterious(0.01) benign(0.236) TCGA-EA-A3HQ-01 13 95248442 95248442 A G TGDS 5'UTR 0.09 TCGA-EA-A3HQ-01 14 50218437 50218437 A G KLHDC1 Missense_Mutation p.R390G 0.62 deleterious_low_confidence(0.05) benign(0.002) TCGA-EA-A3HQ-01 14 56746461 56746461 A G PELI2 Missense_Mutation p.E92G 0.43 deleterious(0.02) benign(0.032) TCGA-EA-A3HQ-01 14 65235758 65235758 G A SPTB Missense_Mutation p.R2006C 0.30 deleterious(0.01) benign(0.012) TCGA-EA-A3HQ-01 14 72117114 72117114 G C SIPA1L1 Missense_Mutation p.E627D 0.28 deleterious(0.01) benign(0.01) TCGA-EA-A3HQ-01 14 72117131 72117131 C A SIPA1L1 Nonsense_Mutation p.S633* 0.30 TCGA-EA-A3HQ-01 15 34130203 34130203 G A RYR3 Missense_Mutation p.D4008N 0.23 probably_damaging(0.98) TCGA-EA-A3HQ-01 15 40659419 40659419 G A DISP2 Missense_Mutation p.R369Q 0.10 deleterious(0.02) possibly_damaging(0.897) TCGA-EA-A3HQ-01 15 69222988 69222988 C T SPESP1 5'UTR 0.29 TCGA-EA-A3HQ-01 15 74487663 74487663 C T STRA6 Missense_Mutation p.E232K 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-EA-A3HQ-01 15 77338614 77338614 G A TSPAN3 3'UTR 0.24 TCGA-EA-A3HQ-01 15 89731451 89731451 G A ABHD2 Silent p.K281K 0.25 TCGA-EA-A3HQ-01 16 2499399 2499399 C T CCNF Silent p.S445S 0.63 TCGA-EA-A3HQ-01 16 67919447 67919447 G C NRN1L Intron 0.42 TCGA-EA-A3HQ-01 16 75563856 75563856 A G CHST5 Missense_Mutation p.F143L 0.51 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HQ-01 17 16246152 16246152 G A CENPV Silent p.I266I 0.49 TCGA-EA-A3HQ-01 17 27254014 27254014 G C PHF12 Missense_Mutation p.R106G 0.53 deleterious(0.02) possibly_damaging(0.462) TCGA-EA-A3HQ-01 17 37667867 37667867 G A CDK12 Missense_Mutation p.D918N 0.32 probably_damaging(0.999) TCGA-EA-A3HQ-01 17 39974356 39974356 C T FKBP10 Missense_Mutation p.P136L 0.89 deleterious(0) possibly_damaging(0.87) TCGA-EA-A3HQ-01 17 41050668 41050668 C T G6PC 5'Flank 0.84 TCGA-EA-A3HQ-01 17 44109643 44109643 G A KANSL1 Missense_Mutation p.R954W 0.45 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HQ-01 17 46019090 46019090 G A PNPO Missense_Mutation p.E17K 0.80 tolerated_low_confidence(0.95) benign(0) TCGA-EA-A3HQ-01 17 66914673 66914673 C A ABCA8 Intron 0.35 TCGA-EA-A3HQ-01 17 7416456 7416456 A G POLR2A Missense_Mutation p.T1625A 0.36 benign(0) TCGA-EA-A3HQ-01 17 79205719 79205719 G A ENTHD2 Missense_Mutation p.S210L 0.60 deleterious(0) benign(0.259) TCGA-EA-A3HQ-01 18 346444 346444 C T COLEC12 Missense_Mutation p.R393H 0.37 deleterious(0.02) possibly_damaging(0.811) TCGA-EA-A3HQ-01 19 1271030 1271030 C T CIRBP Missense_Mutation p.S33F 0.33 tolerated(0.06) possibly_damaging(0.665) TCGA-EA-A3HQ-01 19 19206970 19206970 C A SLC25A42 Missense_Mutation p.H13N 0.34 tolerated(0.52) benign(0) TCGA-EA-A3HQ-01 19 36369799 36369799 C T APLP1 Missense_Mutation p.A553V 0.37 tolerated(0.66) benign(0.002) TCGA-EA-A3HQ-01 19 42873013 42873013 C T MEGF8 Missense_Mutation p.P2100L 0.38 tolerated(0.18) benign(0.013) TCGA-EA-A3HQ-01 19 47423319 47423319 G T ARHGAP35 Missense_Mutation p.D463Y 0.40 deleterious(0) possibly_damaging(0.897) TCGA-EA-A3HQ-01 19 6707526 6707526 G A C3 Silent p.A666A 0.20 TCGA-EA-A3HQ-01 19 7117417 7117417 C A INSR Missense_Mutation p.D1267Y 0.44 deleterious(0) benign(0.399) TCGA-EA-A3HQ-01 19 9800928 9800928 G T ZNF812 Silent p.L417L 0.47 TCGA-EA-A3HQ-01 1 111494603 111494603 C T LRIF1 Silent p.T301T 0.29 TCGA-EA-A3HQ-01 1 120163042 120163042 T C ZNF697 3'UTR 0.21 TCGA-EA-A3HQ-01 1 12837347 12837347 C G PRAMEF12 Missense_Mutation p.L353V 0.29 deleterious(0.02) probably_damaging(0.953) TCGA-EA-A3HQ-01 1 150477120 150477120 C T TARS2 Silent p.A577A 0.25 TCGA-EA-A3HQ-01 1 154186400 154186400 C T C1orf43 Silent p.R103R 0.29 TCGA-EA-A3HQ-01 1 154186975 154186975 C T C1orf43 Missense_Mutation p.D82N 0.23 tolerated(0.19) benign(0.077) TCGA-EA-A3HQ-01 1 158669736 158669736 C T OR6K2 Missense_Mutation p.R236H 0.32 tolerated(0.43) benign(0.006) TCGA-EA-A3HQ-01 1 186282122 186282122 G C TPR 3'UTR 0.37 TCGA-EA-A3HQ-01 1 200860773 200860773 G A C1orf106 5'Flank 0.33 TCGA-EA-A3HQ-01 1 208201416 208201416 C A PLXNA2 Nonsense_Mutation p.E1843* 0.35 TCGA-EA-A3HQ-01 1 222803455 222803455 G A MIA3 Missense_Mutation p.E965K 0.54 tolerated(0.08) benign(0.014) TCGA-EA-A3HQ-01 1 26357957 26357957 G A EXTL1 Missense_Mutation p.R414H 0.24 tolerated(0.18) benign(0.01) TCGA-EA-A3HQ-01 1 27684358 27684358 C T MAP3K6 Silent p.E975E 0.30 TCGA-EA-A3HQ-01 1 27720315 27720315 G A GPR3 Missense_Mutation p.A5T 0.13 tolerated_low_confidence(0.38) benign(0.004) TCGA-EA-A3HQ-01 1 28285385 28285385 C T SMPDL3B 3'UTR 0.22 TCGA-EA-A3HQ-01 1 29189591 29189591 G A OPRD1 Silent p.A305A 0.36 TCGA-EA-A3HQ-01 1 34663356 34663356 C A C1orf94 Missense_Mutation p.T284K 0.30 tolerated(0.17) benign(0.168) TCGA-EA-A3HQ-01 1 9796007 9796007 C G CLSTN1 Missense_Mutation p.C557S 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-EA-A3HQ-01 20 18448223 18448223 G A POLR3F Intron 0.18 TCGA-EA-A3HQ-01 20 42164737 42164737 G A L3MBTL1 Silent p.R620R 0.63 TCGA-EA-A3HQ-01 20 43945198 43945198 G A RBPJL Missense_Mutation p.V420M 0.54 deleterious(0.04) benign(0.314) TCGA-EA-A3HQ-01 20 60551168 60551168 G A TAF4 3'UTR 0.36 TCGA-EA-A3HQ-01 20 7886947 7886947 G C HAO1 Nonsense_Mutation p.S192* 0.62 TCGA-EA-A3HQ-01 21 27326941 27326941 G A APP Silent p.N550N 0.56 TCGA-EA-A3HQ-01 21 45924701 45924701 G A TSPEAR Silent p.F606F 0.47 TCGA-EA-A3HQ-01 22 41537115 41537115 C T EP300 Nonsense_Mutation p.R648* 0.75 TCGA-EA-A3HQ-01 22 50704839 50704839 G A MAPK11 Intron 0.42 TCGA-EA-A3HQ-01 2 100623262 100623262 C T AFF3 Silent p.V260V 0.44 TCGA-EA-A3HQ-01 2 105858922 105858922 G A GPR45 Missense_Mutation p.V203M 0.47 tolerated(0.05) possibly_damaging(0.616) TCGA-EA-A3HQ-01 2 133402986 133402986 G A GPR39 Missense_Mutation p.R390H 0.52 deleterious(0.01) benign(0.011) TCGA-EA-A3HQ-01 2 179507003 179507003 G A TTN Missense_Mutation p.R13507C 0.29 TCGA-EA-A3HQ-01 2 179594157 179594157 G T TTN Missense_Mutation p.S6242R 0.33 TCGA-EA-A3HQ-01 2 189927992 189927992 G A COL5A2 Missense_Mutation p.A592V 0.47 possibly_damaging(0.555) TCGA-EA-A3HQ-01 2 230020601 230020601 T G PID1 Missense_Mutation p.E68A 0.40 deleterious_low_confidence(0.01) benign(0.291) TCGA-EA-A3HQ-01 2 242092929 242092929 G A PPP1R7 Missense_Mutation p.E31K 0.45 tolerated(0.05) unknown(0) TCGA-EA-A3HQ-01 2 51149818 51149818 C T NRXN1 Silent p.A299A 0.37 TCGA-EA-A3HQ-01 3 107466855 107466855 G A BBX Missense_Mutation p.C265Y 0.14 deleterious(0.05) probably_damaging(0.999) TCGA-EA-A3HQ-01 3 14744739 14744739 G A C3orf20 Missense_Mutation p.R283Q 0.29 deleterious(0.05) benign(0.069) TCGA-EA-A3HQ-01 3 158317887 158317887 C T MLF1 Missense_Mutation p.H196Y 0.24 deleterious(0) probably_damaging(1) TCGA-EA-A3HQ-01 3 159986236 159986236 C T IFT80 Missense_Mutation p.E730K 0.19 deleterious(0) possibly_damaging(0.736) TCGA-EA-A3HQ-01 3 167452564 167452564 G C PDCD10 5'UTR 0.42 TCGA-EA-A3HQ-01 3 44540772 44540772 C G ZNF852 Missense_Mutation p.L499F 0.72 tolerated_low_confidence(0.67) benign(0.007) TCGA-EA-A3HQ-01 3 49698698 49698698 C T BSN Silent p.A3140A 0.11 TCGA-EA-A3HQ-01 4 140270690 140270690 G T NAA15 Nonsense_Mutation p.E256* 0.37 TCGA-EA-A3HQ-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.37 deleterious(0) probably_damaging(1) TCGA-EA-A3HQ-01 4 170912847 170912847 G A MFAP3L Silent p.D304D 0.21 TCGA-EA-A3HQ-01 4 47644044 47644044 G A CORIN Silent p.N697N 0.39 TCGA-EA-A3HQ-01 5 137801412 137801412 C T EGR1 5'UTR 0.40 TCGA-EA-A3HQ-01 5 167589659 167589659 G T TENM2 Silent p.L822L 0.34 TCGA-EA-A3HQ-01 5 179751886 179751886 G A GFPT2 Silent p.S202S 0.47 TCGA-EA-A3HQ-01 5 42629161 42629161 G C GHR Missense_Mutation p.R31T 0.41 deleterious_low_confidence(0.03) benign(0.026) TCGA-EA-A3HQ-01 5 52096723 52096723 G A PELO Silent p.V165V 0.45 TCGA-EA-A3HQ-01 5 75581009 75581009 G A SV2C Silent p.S312S 0.35 TCGA-EA-A3HQ-01 5 77471612 77471612 C - AP3B1 Frame_Shift_Del p.R364Kfs*9 0.25 TCGA-EA-A3HQ-01 5 81613843 81613843 A C ATP6AP1L Silent p.G133G 0.42 TCGA-EA-A3HQ-01 6 116953401 116953401 C T RSPH4A Missense_Mutation p.H650Y 0.47 tolerated(0.1) benign(0.284) TCGA-EA-A3HQ-01 6 121769626 121769626 C T GJA1 3'UTR 0.50 TCGA-EA-A3HQ-01 6 160229830 160229830 G A PNLDC1 Silent p.T196T 0.19 TCGA-EA-A3HQ-01 6 160485837 160485837 C T IGF2R Missense_Mutation p.P1340L 0.37 deleterious(0) probably_damaging(0.994) TCGA-EA-A3HQ-01 6 161022040 161022040 G T LPA Nonsense_Mutation p.C1012* 0.39 TCGA-EA-A3HQ-01 6 161538151 161538151 C T MAP3K4 3'UTR 0.32 TCGA-EA-A3HQ-01 6 167711458 167711458 G A UNC93A Silent p.T175T 0.40 TCGA-EA-A3HQ-01 6 25042194 25042194 G A RP11-367G6.3 RNA 0.28 TCGA-EA-A3HQ-01 6 36269960 36269960 A T PNPLA1 Silent p.L366L 0.35 TCGA-EA-A3HQ-01 6 47682098 47682098 G T GPR115 Nonsense_Mutation p.E373* 0.40 TCGA-EA-A3HQ-01 6 7373452 7373452 G A CAGE1 Nonsense_Mutation p.Q534* 0.35 TCGA-EA-A3HQ-01 7 1535823 1535823 G A INTS1 Silent p.A560A 0.40 TCGA-EA-A3HQ-01 7 86577210 86577213 TAGA - KIAA1324L Frame_Shift_Del p.Y112* 0.36 TCGA-EA-A3HQ-01 8 109094785 109094785 G A RSPO2 Missense_Mutation p.R28C 0.16 deleterious(0.01) possibly_damaging(0.648) TCGA-EA-A3HQ-01 8 128753496 128753496 T A MYC 3'UTR 0.63 TCGA-EA-A3HQ-01 8 30695415 30695415 C T TEX15 Silent p.S2412S 0.23 TCGA-EA-A3HQ-01 8 6873456 6873456 C T DEFA3 3'UTR 0.26 TCGA-EA-A3HQ-01 8 70964454 70964454 G C PRDM14 Missense_Mutation p.S525C 0.51 deleterious(0.03) benign(0.054) TCGA-EA-A3HQ-01 8 91637201 91637201 C A TMEM64 3'UTR 0.18 TCGA-EA-A3HQ-01 9 117002739 117002739 C T COL27A1 Missense_Mutation p.P936L 0.29 unknown(0) TCGA-EA-A3HQ-01 9 136652376 136652376 C T VAV2 Missense_Mutation p.G472R 0.34 deleterious(0.01) possibly_damaging(0.864) TCGA-EA-A3HQ-01 9 32784128 32784128 G C TMEM215 5'UTR 0.39 TCGA-EA-A3HQ-01 9 35910639 35910639 G A HRCT1 3'Flank 0.39 TCGA-EA-A3HQ-01 X 135750030 135750030 T C ARHGEF6 3'UTR 0.32 TCGA-EA-A3HQ-01 X 19568181 19568181 C T SH3KBP1 Missense_Mutation p.V469M 0.78 deleterious(0) benign(0.067) TCGA-EA-A3HQ-01 X 40945148 40945148 G A USP9X 5'UTR 0.64 TCGA-EA-A3HQ-01 X 49066140 49066140 T A CACNA1F Missense_Mutation p.E1601D 0.73 deleterious(0.01) possibly_damaging(0.573) TCGA-EA-A3HQ-01 X 67752267 67752267 T C YIPF6 3'UTR 0.78 TCGA-EA-A3HQ-01 X 73065175 73065175 G T XIST RNA 0.55 TCGA-EA-A3HQ-01 X 84525770 84525770 C T ZNF711 Missense_Mutation p.H408Y 0.65 tolerated(0.29) benign(0.103) TCGA-EA-A3HQ-01 X 92927307 92927307 C T NAP1L3 Missense_Mutation p.D333N 0.74 deleterious(0) probably_damaging(0.945) TCGA-EA-A3HR-01 10 104123068 104123068 C T GBF1 Silent p.G643G 0.28 TCGA-EA-A3HR-01 10 104183034 104183034 G A CUEDC2 3'UTR 0.56 TCGA-EA-A3HR-01 10 114171226 114171226 G A ACSL5 Missense_Mutation p.G326E 0.22 deleterious(0) probably_damaging(1) TCGA-EA-A3HR-01 10 117024752 117024752 C T ATRNL1 Silent p.N590N 0.40 TCGA-EA-A3HR-01 10 61028333 61028333 C G FAM13C Missense_Mutation p.E308Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A3HR-01 11 1272203 1272203 C G MUC5B Nonsense_Mutation p.S4698* 0.27 TCGA-EA-A3HR-01 11 20142984 20142985 CT - NAV2 3'Flank 0.45 TCGA-EA-A3HR-01 11 55595383 55595383 C T OR5L2 Missense_Mutation p.S230F 0.30 deleterious(0) probably_damaging(0.984) TCGA-EA-A3HR-01 11 58322403 58322403 C T LPXN Missense_Mutation p.E82K 0.43 tolerated(0.38) benign(0.002) TCGA-EA-A3HR-01 12 109277522 109277522 G A DAO Intron 0.35 TCGA-EA-A3HR-01 12 110968524 110968524 T C RAD9B Intron 0.27 TCGA-EA-A3HR-01 12 120652925 120652925 T C PXN Missense_Mutation p.K376R 0.33 tolerated(0.07) benign(0.039) TCGA-EA-A3HR-01 12 131487803 131487803 G C GPR133 Missense_Mutation p.G367A 0.48 tolerated(1) benign(0) TCGA-EA-A3HR-01 12 52771916 52771916 G A KRT84 Missense_Mutation p.P569S 0.45 tolerated_low_confidence(0.08) benign(0.015) TCGA-EA-A3HR-01 12 56365574 56365574 G T CDK2 3'UTR 0.38 TCGA-EA-A3HR-01 12 69784173 69784173 A C YEATS4 3'UTR 0.45 TCGA-EA-A3HR-01 13 28122595 28122595 C G LNX2 Missense_Mutation p.M650I 0.33 tolerated(0.48) probably_damaging(0.997) TCGA-EA-A3HR-01 14 23895233 23895233 C T MYH7 Missense_Mutation p.G701D 0.05 deleterious(0) probably_damaging(1) TCGA-EA-A3HR-01 15 101872158 101872158 C T PCSK6 Missense_Mutation p.R645H 0.46 tolerated(0.05) possibly_damaging(0.84) TCGA-EA-A3HR-01 15 25223432 25223432 C T SNRPN Missense_Mutation p.P218S 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-EA-A3HR-01 15 44028956 44028956 C T RNU6-354P 5'Flank 0.43 TCGA-EA-A3HR-01 15 75656910 75656910 C G MAN2C1 Silent p.L173L 0.36 TCGA-EA-A3HR-01 15 89401545 89401545 G A ACAN Missense_Mutation p.R1910K 0.44 tolerated(0.09) benign(0.272) TCGA-EA-A3HR-01 16 15198469 15198469 G C RP11-1186N24.5 3'Flank 0.23 TCGA-EA-A3HR-01 16 1537463 1537463 G C PTX4 Missense_Mutation p.S212C 0.33 tolerated(0.07) benign(0.009) TCGA-EA-A3HR-01 16 2460230 2460230 G C ABCA17P RNA 0.35 TCGA-EA-A3HR-01 16 27643924 27643924 G T KIAA0556 Intron 0.32 TCGA-EA-A3HR-01 16 3081097 3081097 C T CCDC64B Missense_Mutation p.E113K 0.50 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HR-01 16 65022216 65022216 G A CDH11 Silent p.A281A 0.36 TCGA-EA-A3HR-01 16 717452 717452 G A WDR90 Missense_Mutation p.D1704N 0.43 tolerated(0.06) possibly_damaging(0.823) TCGA-EA-A3HR-01 17 26989106 26989106 C A SDF2 5'UTR 0.41 TCGA-EA-A3HR-01 17 3571856 3571856 G A TAX1BP3 5'UTR 0.33 TCGA-EA-A3HR-01 17 3571867 3571867 C T TAX1BP3 5'UTR 0.30 TCGA-EA-A3HR-01 17 37557641 37557641 C T FBXL20 Silent p.V5V 0.23 TCGA-EA-A3HR-01 17 39190812 39190812 C A KRTAP1-3 Missense_Mutation p.G88C 0.31 tolerated(0.08) unknown(0) TCGA-EA-A3HR-01 17 39190875 39190875 C A KRTAP1-3 Nonsense_Mutation p.E67* 0.28 TCGA-EA-A3HR-01 17 45608750 45608750 C T NPEPPS Silent p.V28V 0.43 TCGA-EA-A3HR-01 17 56349079 56349079 C T MPO Missense_Mutation p.R656H 0.39 deleterious(0) probably_damaging(0.994) TCGA-EA-A3HR-01 17 80585163 80585163 C T WDR45B Missense_Mutation p.M83I 0.55 tolerated(0.23) benign(0.002) TCGA-EA-A3HR-01 18 21115604 21115604 G A NPC1 Silent p.L1102L 0.18 TCGA-EA-A3HR-01 19 10230374 10230374 G A EIF3G Missense_Mutation p.S8L 0.34 tolerated(0.39) benign(0.014) TCGA-EA-A3HR-01 19 1574848 1574848 G A MBD3 3'Flank 0.41 TCGA-EA-A3HR-01 19 2852402 2852402 C A ZNF555 Silent p.L113L 0.38 TCGA-EA-A3HR-01 19 36017976 36017976 C T SBSN Missense_Mutation p.R403K 0.06 tolerated(1) benign(0.14) TCGA-EA-A3HR-01 19 36033427 36033427 C T GAPDHS Silent p.I192I 0.05 TCGA-EA-A3HR-01 19 37382767 37382767 G C ZNF829 Nonsense_Mutation p.S390* 0.12 TCGA-EA-A3HR-01 19 44536333 44536333 G A ZNF222 Missense_Mutation p.G209E 0.82 deleterious(0.02) possibly_damaging(0.601) TCGA-EA-A3HR-01 19 56896548 56896548 C G ZNF582 Missense_Mutation p.E80Q 0.79 tolerated(0.1) benign(0.051) TCGA-EA-A3HR-01 19 59028725 59028725 C T ZBTB45 Missense_Mutation p.A106T 0.10 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HR-01 19 759979 759979 G A MISP Silent p.A617A 0.32 TCGA-EA-A3HR-01 1 103470210 103470210 C T COL11A1 Missense_Mutation p.R618Q 0.48 unknown(0) TCGA-EA-A3HR-01 1 12202462 12202462 G A TNFRSF8 Silent p.A554A 0.53 TCGA-EA-A3HR-01 1 156849868 156849868 C T NTRK1 Silent p.S708S 0.50 TCGA-EA-A3HR-01 1 183891454 183891454 C G RGL1 Silent p.V736V 0.34 TCGA-EA-A3HR-01 1 216462695 216462695 G A USH2A Missense_Mutation p.S633L 0.26 possibly_damaging(0.612) TCGA-EA-A3HR-01 1 220151900 220151900 G T EPRS Missense_Mutation p.H1357Q 0.17 tolerated(0.05) possibly_damaging(0.613) TCGA-EA-A3HR-01 1 220197645 220197645 C T EPRS Missense_Mutation p.E302K 0.42 deleterious(0) possibly_damaging(0.7) TCGA-EA-A3HR-01 1 23520071 23520071 G A HTR1D Silent p.I214I 0.69 TCGA-EA-A3HR-01 1 27706518 27706518 C G CD164L2 3'UTR 0.61 TCGA-EA-A3HR-01 1 46079769 46079769 C G NASP Missense_Mutation p.S503C 0.61 deleterious(0) probably_damaging(0.91) TCGA-EA-A3HR-01 1 97187416 97187416 C T PTBP2 5'UTR 0.53 TCGA-EA-A3HR-01 20 1559191 1559191 C T RP4-576H24.4 Missense_Mutation p.E75K 0.37 tolerated(0.19) benign(0.146) TCGA-EA-A3HR-01 20 35742515 35742515 G C MROH8 Missense_Mutation p.L884V 0.21 tolerated(0.07) possibly_damaging(0.839) TCGA-EA-A3HR-01 20 3904042 3904042 A T PANK2 3'UTR 0.53 TCGA-EA-A3HR-01 22 24562874 24562874 G T CABIN1 Nonsense_Mutation p.E1759* 0.51 TCGA-EA-A3HR-01 22 25144974 25144974 C T PIWIL3 Missense_Mutation p.R450Q 0.20 tolerated(1) benign(0.001) TCGA-EA-A3HR-01 22 29939420 29939420 C T THOC5 Missense_Mutation p.E118K 0.34 tolerated(0.07) benign(0.006) TCGA-EA-A3HR-01 2 208461841 208461841 G A CREB1 3'UTR 0.64 TCGA-EA-A3HR-01 2 44549013 44549013 C G PREPL Missense_Mutation p.D683H 0.29 deleterious(0) probably_damaging(0.957) TCGA-EA-A3HR-01 2 64147684 64147684 G A VPS54 Silent p.T649T 0.45 TCGA-EA-A3HR-01 3 101540356 101540356 G A NXPE3 Missense_Mutation p.R413H 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-EA-A3HR-01 3 107762965 107762965 C A CD47 3'Flank 0.21 TCGA-EA-A3HR-01 3 126746788 126746788 C T PLXNA1 Silent p.C1456C 0.06 TCGA-EA-A3HR-01 3 154018864 154018864 G A DHX36 Nonsense_Mutation p.Q424* 0.26 TCGA-EA-A3HR-01 3 172480720 172480720 A G ECT2 Silent p.Q342Q 0.12 TCGA-EA-A3HR-01 3 183967235 183967235 T A ALG3 5'Flank 0.42 TCGA-EA-A3HR-01 3 195507066 195507066 G A MUC4 Silent p.V3795V 0.13 TCGA-EA-A3HR-01 3 195515581 195515582 AG - MUC4 Frame_Shift_Del p.L957Vfs*7 0.13 TCGA-EA-A3HR-01 3 39226849 39226849 C T XIRP1 Missense_Mutation p.R1363Q 0.34 tolerated_low_confidence(0.7) benign(0.001) TCGA-EA-A3HR-01 3 40275497 40275497 A G MYRIP Missense_Mutation p.T685A 0.10 tolerated(0.16) benign(0.094) TCGA-EA-A3HR-01 3 4753522 4753522 G T ITPR1 Missense_Mutation p.M1676I 0.27 deleterious(0) probably_damaging(0.943) TCGA-EA-A3HR-01 4 109588470 109588470 G A OSTC 3'UTR 0.55 TCGA-EA-A3HR-01 4 155180783 155180783 C T DCHS2 Missense_Mutation p.E1780K 0.39 deleterious(0) benign(0.012) TCGA-EA-A3HR-01 4 187531024 187531025 AG - FAT1 Frame_Shift_Del p.P3333Rfs*13 0.26 TCGA-EA-A3HR-01 4 2160903 2160903 C A POLN Missense_Mutation p.K530N 0.12 deleterious(0.04) probably_damaging(0.978) TCGA-EA-A3HR-01 4 39205309 39205309 G C WDR19 Missense_Mutation p.K190N 0.27 deleterious(0.01) benign(0.254) TCGA-EA-A3HR-01 4 57244496 57244496 A G AASDH Silent p.Y162Y 0.33 TCGA-EA-A3HR-01 4 88257875 88257875 C G HSD17B11 3'UTR 0.40 TCGA-EA-A3HR-01 5 140242353 140242353 G A AC005609.1 3'UTR 0.68 TCGA-EA-A3HR-01 5 140594526 140594526 G A PCDHB13 Silent p.E277E 0.67 TCGA-EA-A3HR-01 5 63257121 63257121 G A HTR1A Silent p.I142I 0.69 TCGA-EA-A3HR-01 5 64019396 64019396 C G SREK1IP1 3'UTR 0.29 TCGA-EA-A3HR-01 5 848632 848632 G T ZDHHC11 Silent p.I122I 0.20 TCGA-EA-A3HR-01 6 152763321 152763321 C T SYNE1 Silent p.A1299A 0.25 TCGA-EA-A3HR-01 6 158873197 158873197 G C TULP4 Missense_Mutation p.Q252H 0.35 tolerated(0.3) benign(0.021) TCGA-EA-A3HR-01 6 29342268 29342268 G C OR12D3 Missense_Mutation p.S266C 0.17 deleterious(0.01) possibly_damaging(0.775) TCGA-EA-A3HR-01 6 33272198 33272198 G A TAPBP Silent p.L362L 0.42 TCGA-EA-A3HR-01 6 33273056 33273056 G C TAPBP Nonsense_Mutation p.S193* 0.37 TCGA-EA-A3HR-01 6 38919178 38919178 C G DNAH8 Missense_Mutation p.I3894M 0.29 probably_damaging(0.989) TCGA-EA-A3HR-01 6 39053910 39053910 G A GLP1R 3'UTR 0.42 TCGA-EA-A3HR-01 6 44988298 44988298 C T SUPT3H Silent p.L97L 0.41 TCGA-EA-A3HR-01 6 75893849 75893849 G A COL12A1 Missense_Mutation p.P337S 0.35 possibly_damaging(0.676) TCGA-EA-A3HR-01 7 102604086 102604086 C T FBXL13 Silent p.V206V 0.43 TCGA-EA-A3HR-01 7 124783047 124783047 C A POT1-AS1 RNA 0.24 TCGA-EA-A3HR-01 7 142499015 142499015 G C TRBC2 Missense_Mutation p.V98L 0.24 deleterious(0.01) benign(0.377) TCGA-EA-A3HR-01 7 44736558 44736558 G A OGDH Missense_Mutation p.R649Q 0.42 tolerated(0.16) probably_damaging(0.998) TCGA-EA-A3HR-01 7 56155370 56155370 C T PHKG1 Silent p.P61P 0.29 TCGA-EA-A3HR-01 7 70597809 70597809 C G WBSCR17 Silent p.V7V 0.32 TCGA-EA-A3HR-01 7 99746570 99746570 G A LAMTOR4 5'UTR 0.30 TCGA-EA-A3HR-01 7 99917593 99917593 G A SPDYE3 Missense_Mutation p.D544N 0.18 deleterious(0.04) possibly_damaging(0.626) TCGA-EA-A3HR-01 8 20103756 20103756 G A LZTS1 3'UTR 0.64 TCGA-EA-A3HR-01 8 3081281 3081281 G A CSMD1 Missense_Mutation p.P1485L 0.78 possibly_damaging(0.574) TCGA-EA-A3HR-01 8 38174694 38174694 G A WHSC1L1 Intron 0.25 TCGA-EA-A3HR-01 8 56015801 56015801 C T XKR4 Silent p.C251C 0.22 TCGA-EA-A3HR-01 9 116930888 116930888 G A COL27A1 Silent p.A351A 0.52 TCGA-EA-A3HR-01 9 126150025 126150025 A G DENND1A Intron 0.38 TCGA-EA-A3HR-01 9 133759592 133759592 C T ABL1 Nonsense_Mutation p.R658* 0.29 TCGA-EA-A3HR-01 9 77562926 77562926 C T C9orf40 3'UTR 0.52 TCGA-EA-A3HR-01 9 94493270 94493270 C T ROR2 Missense_Mutation p.G369R 0.63 deleterious(0.03) possibly_damaging(0.597) TCGA-EA-A3HR-01 X 47040952 47040952 G A RBM10 Silent p.Q494Q 0.36 TCGA-EA-A3HR-01 X 51075697 51075697 C G NUDT10 Intron 0.33 TCGA-EA-A3HR-01 X 71825220 71825220 G A PHKA1 Nonsense_Mutation p.R906* 0.58 TCGA-EA-A3HR-01 X 91873933 91873933 C T PCDH11X Silent p.P1346P 0.35 TCGA-EA-A3HS-01 10 101715440 101715440 G A DNMBP Silent p.T597T 0.45 TCGA-EA-A3HS-01 10 102546746 102546746 G A PAX2 Silent p.L221L 0.41 TCGA-EA-A3HS-01 10 102789820 102789820 C A PDZD7 Missense_Mutation p.G53W 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-EA-A3HS-01 10 105765672 105765672 G A SLK Missense_Mutation p.R828H 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-EA-A3HS-01 10 116100408 116100408 C T AFAP1L2 Silent p.K33K 0.28 TCGA-EA-A3HS-01 10 116100470 116100470 C T AFAP1L2 Missense_Mutation p.E13K 0.39 deleterious(0) probably_damaging(0.926) TCGA-EA-A3HS-01 10 116100485 116100485 C A AFAP1L2 Nonsense_Mutation p.E8* 0.37 TCGA-EA-A3HS-01 10 120802274 120802274 G A EIF3A Missense_Mutation p.R920C 0.29 deleterious(0) probably_damaging(0.991) TCGA-EA-A3HS-01 10 12209845 12209845 C T NUDT5 Intron 0.23 TCGA-EA-A3HS-01 10 123845436 123845436 C T TACC2 Missense_Mutation p.P1141S 0.39 benign(0.001) TCGA-EA-A3HS-01 10 123846937 123846937 T C TACC2 Missense_Mutation p.L1641S 0.42 benign(0.001) TCGA-EA-A3HS-01 10 124395638 124395638 G A DMBT1 Missense_Mutation p.R2098H 0.43 deleterious(0.04) probably_damaging(0.962) TCGA-EA-A3HS-01 10 129899598 129899598 G A MKI67 Missense_Mutation p.A3210V 0.40 tolerated_low_confidence(0.22) benign(0.444) TCGA-EA-A3HS-01 10 135137828 135137828 C T CALY 3'Flank 0.47 TCGA-EA-A3HS-01 10 14939270 14939270 T C SUV39H2 Silent p.C201C 0.40 TCGA-EA-A3HS-01 10 16882332 16882332 C T CUBN Silent p.P3343P 0.46 TCGA-EA-A3HS-01 10 17088073 17088073 G A CUBN Missense_Mutation p.S1117L 0.15 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 10 26506546 26506546 C A GAD2 Silent p.A28A 0.20 TCGA-EA-A3HS-01 10 28436486 28436486 C T MPP7 Missense_Mutation p.E81K 0.45 deleterious(0) benign(0.015) TCGA-EA-A3HS-01 10 28438938 28438938 G A MPP7 Silent p.L69L 0.35 TCGA-EA-A3HS-01 10 28884858 28884858 G A WAC Silent p.T269T 0.47 TCGA-EA-A3HS-01 10 35897382 35897382 C T GJD4 Missense_Mutation p.P314L 0.22 tolerated(0.68) benign(0.428) TCGA-EA-A3HS-01 10 45643042 45643042 C T RP11-445N18.7 RNA 0.47 TCGA-EA-A3HS-01 10 49383977 49383977 G A FRMPD2 Silent p.G967G 0.12 TCGA-EA-A3HS-01 10 5782272 5782272 C T FAM208B Silent p.D713D 0.32 TCGA-EA-A3HS-01 10 5782334 5782334 G A FAM208B Missense_Mutation p.R734H 0.23 tolerated(1) benign(0) TCGA-EA-A3HS-01 10 61004986 61004986 G A PHYHIPL Missense_Mutation p.A256T 0.37 deleterious(0.01) possibly_damaging(0.707) TCGA-EA-A3HS-01 10 70737412 70737412 G A DDX21 Missense_Mutation p.V624I 0.49 tolerated(0.88) benign(0.042) TCGA-EA-A3HS-01 10 71129092 71129092 G A HK1 Missense_Mutation p.G235S 0.42 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 10 71332424 71332424 G A NEUROG3 Missense_Mutation p.R126C 0.23 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 10 71689838 71689838 G A COL13A1 Missense_Mutation p.E498K 0.09 deleterious(0.03) probably_damaging(0.994) TCGA-EA-A3HS-01 10 73045175 73045175 C T UNC5B Missense_Mutation p.P181S 0.24 deleterious(0.01) possibly_damaging(0.745) TCGA-EA-A3HS-01 10 76978936 76978936 A C VDAC2 Missense_Mutation p.D104A 0.31 deleterious(0) possibly_damaging(0.455) TCGA-EA-A3HS-01 10 85992417 85992417 C T LRIT1 Missense_Mutation p.A380T 0.44 tolerated(0.23) benign(0.244) TCGA-EA-A3HS-01 10 87614349 87614349 C A GRID1 Silent p.G379G 0.46 TCGA-EA-A3HS-01 10 93593700 93593700 G T TNKS2 Missense_Mutation p.G456W 0.41 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 10 94790 94790 G C TUBB8 Missense_Mutation p.S40R 0.42 deleterious_low_confidence(0.05) possibly_damaging(0.701) TCGA-EA-A3HS-01 10 94818310 94818310 A - EXOC6 3'UTR 0.36 TCGA-EA-A3HS-01 10 97117507 97117507 C A SORBS1 Missense_Mutation p.G670V 0.57 deleterious(0.05) probably_damaging(0.996) TCGA-EA-A3HS-01 10 98129986 98129986 C T TLL2 Missense_Mutation p.A917T 0.22 tolerated(0.49) benign(0.111) TCGA-EA-A3HS-01 10 98281889 98281889 C T TM9SF3 3'UTR 0.39 TCGA-EA-A3HS-01 10 99200998 99200998 G A EXOSC1 Missense_Mutation p.R81C 0.10 deleterious(0) benign(0.161) TCGA-EA-A3HS-01 10 99338347 99338347 C T ANKRD2 Silent p.A174A 0.54 TCGA-EA-A3HS-01 11 10825701 10825701 C T EIF4G2 Missense_Mutation p.R178Q 0.39 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HS-01 11 113711433 113711433 G A USP28 Missense_Mutation p.R141C 0.18 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 11 116718191 116718191 C T SIK3 Splice_Site p.X1212_splice 0.24 TCGA-EA-A3HS-01 11 117159734 117159734 T - BACE1 3'UTR 0.33 TCGA-EA-A3HS-01 11 117886525 117886525 C T TMPRSS4-AS1 Splice_Site 0.43 TCGA-EA-A3HS-01 11 118277708 118277708 G A ATP5L Missense_Mutation p.E37K 0.41 deleterious(0.04) benign(0.107) TCGA-EA-A3HS-01 11 118342765 118342765 A G KMT2A Silent p.V297V 0.36 TCGA-EA-A3HS-01 11 11951036 11951036 G C USP47 Missense_Mutation p.G413A 0.24 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 11 120190563 120190563 A - POU2F3 3'UTR 0.34 TCGA-EA-A3HS-01 11 123483485 123483485 C T GRAMD1B Missense_Mutation p.R503C 0.40 tolerated(0.23) probably_damaging(0.998) TCGA-EA-A3HS-01 11 125324107 125324107 C T FEZ1 Splice_Site p.X314_splice 0.44 TCGA-EA-A3HS-01 11 126075456 126075456 G A RPUSD4 Missense_Mutation p.R235W 0.50 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 11 1265003 1265003 C T MUC5B Missense_Mutation p.P2298L 0.37 unknown(0) TCGA-EA-A3HS-01 11 1269285 1269285 G T MUC5B Silent p.P3725P 0.38 TCGA-EA-A3HS-01 11 1276296 1276296 C T MUC5B Silent p.D5230D 0.19 TCGA-EA-A3HS-01 11 129817107 129817107 G A PRDM10 Silent p.D151D 0.25 TCGA-EA-A3HS-01 11 13410208 13410208 A T BTBD10 3'UTR 0.27 TCGA-EA-A3HS-01 11 15243134 15243134 G A INSC Missense_Mutation p.V358I 0.36 tolerated(0.4) benign(0.004) TCGA-EA-A3HS-01 11 1618696 1618696 G A KRTAP5-2 3'UTR 0.27 TCGA-EA-A3HS-01 11 17633766 17633766 G A OTOG Missense_Mutation p.V2073M 0.37 probably_damaging(0.999) TCGA-EA-A3HS-01 11 17757611 17757611 C T KCNC1 Missense_Mutation p.T21M 0.29 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 11 18159900 18159900 T C MRGPRX3 3'UTR 0.31 TCGA-EA-A3HS-01 11 18750477 18750477 G A PTPN5 3'UTR 0.39 TCGA-EA-A3HS-01 11 27679695 27679695 G A BDNF Silent p.S221S 0.25 TCGA-EA-A3HS-01 11 34158223 34158223 G A NAT10 Missense_Mutation p.R688Q 0.37 deleterious(0) probably_damaging(0.935) TCGA-EA-A3HS-01 11 46741275 46741275 C T F2 Missense_Mutation p.R35W 0.35 tolerated(0.11) benign(0.07) TCGA-EA-A3HS-01 11 47437051 47437051 C T SLC39A13 3'UTR 0.16 TCGA-EA-A3HS-01 11 47839649 47839649 G A NUP160 Missense_Mutation p.P464S 0.40 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 11 4825501 4825501 G A OR52R1 Missense_Mutation p.T37M 0.42 tolerated(1) benign(0.001) TCGA-EA-A3HS-01 11 5624570 5624570 C T TRIM6 Nonsense_Mutation p.R38* 0.16 TCGA-EA-A3HS-01 11 563281 563281 G A RASSF7 Silent p.P305P 0.44 TCGA-EA-A3HS-01 11 56344660 56344660 C T OR5M10 Missense_Mutation p.A180T 0.44 tolerated(0.31) probably_damaging(1) TCGA-EA-A3HS-01 11 56344882 56344882 C T OR5M10 Missense_Mutation p.A106T 0.44 tolerated(0.45) benign(0.022) TCGA-EA-A3HS-01 11 58385241 58385241 A - ZFP91 3'UTR 0.60 TCGA-EA-A3HS-01 11 58974346 58974346 G A DTX4 3'UTR 0.38 TCGA-EA-A3HS-01 11 60621125 60621125 C T PTGDR2 Missense_Mutation p.S24N 0.19 tolerated(0.38) benign(0.009) TCGA-EA-A3HS-01 11 608545 608545 C T PHRF1 Missense_Mutation p.S1029L 0.43 deleterious(0.01) possibly_damaging(0.776) TCGA-EA-A3HS-01 11 609547 609547 C T PHRF1 Missense_Mutation p.A1363V 0.45 tolerated(0.8) benign(0.002) TCGA-EA-A3HS-01 11 62334329 62334329 G A EEF1G Missense_Mutation p.A269V 0.43 tolerated(0.3) benign(0.008) TCGA-EA-A3HS-01 11 62394141 62394141 G A GANAB Missense_Mutation p.R827C 0.28 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HS-01 11 62444340 62444340 G T UBXN1 Silent p.G263G 0.26 TCGA-EA-A3HS-01 11 64112433 64112433 C T CCDC88B Missense_Mutation p.A807V 0.36 tolerated(0.95) benign(0.063) TCGA-EA-A3HS-01 11 64121536 64121536 C - CCDC88B Frame_Shift_Del p.P1333Lfs*276 0.15 TCGA-EA-A3HS-01 11 64678410 64678410 C T ATG2A Missense_Mutation p.V495M 0.45 tolerated(0.09) benign(0.085) TCGA-EA-A3HS-01 11 64853917 64853917 G A ZFPL1 Missense_Mutation p.R82H 0.38 tolerated(0.31) benign(0.001) TCGA-EA-A3HS-01 11 65547253 65547253 G T AP5B1 Silent p.P237P 0.41 TCGA-EA-A3HS-01 11 66026210 66026210 G C KLC2 Missense_Mutation p.E49Q 0.49 tolerated(0.31) possibly_damaging(0.491) TCGA-EA-A3HS-01 11 66039726 66039726 G A RAB1B Intron 0.35 TCGA-EA-A3HS-01 11 6630633 6630633 G A ILK Missense_Mutation p.R241Q 0.41 tolerated(0.06) benign(0.102) TCGA-EA-A3HS-01 11 66476409 66476409 C T SPTBN2 Silent p.T385T 0.45 TCGA-EA-A3HS-01 11 66627617 66627617 G A LRFN4 Missense_Mutation p.C620Y 0.33 tolerated_low_confidence(0.07) benign(0.056) TCGA-EA-A3HS-01 11 67395485 67395485 G A NUDT8 Missense_Mutation p.R215C 0.42 tolerated_low_confidence(0.11) benign(0) TCGA-EA-A3HS-01 11 67818235 67818235 A G TCIRG1 Silent p.S814S 0.45 TCGA-EA-A3HS-01 11 70049728 70049728 C A FADD Missense_Mutation p.L55M 0.49 tolerated(0.06) possibly_damaging(0.882) TCGA-EA-A3HS-01 11 71817175 71817175 G A LRTOMT Missense_Mutation p.G93S 0.52 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 11 73357612 73357612 C T PLEKHB1 5'UTR 0.39 TCGA-EA-A3HS-01 11 74168560 74168560 C T KCNE3 Missense_Mutation p.V17M 0.41 tolerated_low_confidence(0.22) possibly_damaging(0.636) TCGA-EA-A3HS-01 11 74408342 74408342 C A CHRDL2 Missense_Mutation p.Q392H 0.13 tolerated_low_confidence(0.52) benign(0.371) TCGA-EA-A3HS-01 11 75277927 75277927 C T SERPINH1 Missense_Mutation p.A178V 0.43 tolerated(0.06) possibly_damaging(0.834) TCGA-EA-A3HS-01 11 77320575 77320575 A - AQP11 3'UTR 0.50 TCGA-EA-A3HS-01 11 77412091 77412091 C A RSF1 Missense_Mutation p.R728M 0.36 deleterious(0.03) probably_damaging(0.982) TCGA-EA-A3HS-01 11 77784179 77784179 G A NDUFC2 Missense_Mutation p.R59C 0.33 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 11 78285409 78285410 - C NARS2 Frame_Shift_Ins p.E42Gfs*4 0.32 TCGA-EA-A3HS-01 11 801100 801100 G A PIDD Missense_Mutation p.R551C 0.54 tolerated(0.21) benign(0.014) TCGA-EA-A3HS-01 11 8715559 8715559 A G ST5 3'UTR 0.45 TCGA-EA-A3HS-01 11 92533704 92533704 G A FAT3 Missense_Mutation p.V2509M 0.37 benign(0.404) TCGA-EA-A3HS-01 11 94609292 94609292 T C AMOTL1 3'UTR 0.36 TCGA-EA-A3HS-01 12 101603651 101603651 C T SLC5A8 5'UTR 0.48 TCGA-EA-A3HS-01 12 105303452 105303452 G A SLC41A2 Missense_Mutation p.A215V 0.60 deleterious(0) possibly_damaging(0.854) TCGA-EA-A3HS-01 12 107385402 107385402 G A CRY1 3'UTR 0.27 TCGA-EA-A3HS-01 12 108912785 108912785 G A FICD Missense_Mutation p.V304M 0.07 tolerated(0.05) possibly_damaging(0.563) TCGA-EA-A3HS-01 12 109625821 109625821 C T ACACB Silent p.S666S 0.40 TCGA-EA-A3HS-01 12 110784645 110784645 T - ATP2A2 3'UTR 0.37 TCGA-EA-A3HS-01 12 112460154 112460154 G A ERP29 Missense_Mutation p.D162N 0.36 deleterious(0.01) possibly_damaging(0.896) TCGA-EA-A3HS-01 12 114377840 114377840 G A RBM19 Silent p.G621G 0.41 TCGA-EA-A3HS-01 12 11546673 11546673 A G PRB2 Silent p.S113S 0.12 TCGA-EA-A3HS-01 12 117157654 117157654 G A C12orf49 Missense_Mutation p.R150W 0.34 deleterious(0) probably_damaging(0.93) TCGA-EA-A3HS-01 12 118517339 118517339 C T VSIG10 Missense_Mutation p.R246H 0.16 tolerated(0.12) benign(0.022) TCGA-EA-A3HS-01 12 119592095 119592095 G A SRRM4 Missense_Mutation p.R480H 0.32 tolerated_low_confidence(0.11) probably_damaging(0.984) TCGA-EA-A3HS-01 12 120572361 120572361 C T GCN1L1 Missense_Mutation p.R2393H 0.43 probably_damaging(0.981) TCGA-EA-A3HS-01 12 120586122 120586122 C T GCN1L1 Silent p.A1525A 0.43 TCGA-EA-A3HS-01 12 120800886 120800886 G A MSI1 Missense_Mutation p.T121M 0.15 deleterious(0) probably_damaging(0.99) TCGA-EA-A3HS-01 12 120984354 120984354 G A RNF10 Missense_Mutation p.G102S 0.42 tolerated_low_confidence(0.17) benign(0.086) TCGA-EA-A3HS-01 12 121202491 121202491 A T SPPL3 3'UTR 0.35 TCGA-EA-A3HS-01 12 121891049 121891049 C T KDM2B Silent p.T611T 0.43 TCGA-EA-A3HS-01 12 122186251 122186251 C T TMEM120B Missense_Mutation p.R70W 0.40 deleterious(0.02) benign(0) TCGA-EA-A3HS-01 12 122248707 122248707 G A SETD1B Missense_Mutation p.G619E 0.61 probably_damaging(0.96) TCGA-EA-A3HS-01 12 122669255 122669255 C T LRRC43 Missense_Mutation p.R114W 0.55 deleterious(0.02) possibly_damaging(0.854) TCGA-EA-A3HS-01 12 123187166 123187166 C T HCAR2 Missense_Mutation p.R222Q 0.37 tolerated(0.2) benign(0.327) TCGA-EA-A3HS-01 12 123641422 123641422 G A MPHOSPH9 Nonsense_Mutation p.R1010* 0.57 TCGA-EA-A3HS-01 12 124144091 124144091 T C GTF2H3 Missense_Mutation p.L215P 0.48 deleterious(0) probably_damaging(0.992) TCGA-EA-A3HS-01 12 124498221 124498221 T - ZNF664 3'UTR 0.28 TCGA-EA-A3HS-01 12 129189886 129189886 C T TMEM132C Silent p.G791G 0.23 TCGA-EA-A3HS-01 12 130648352 130648352 G A FZD10 Missense_Mutation p.A289T 0.32 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 12 132329969 132329969 C T MMP17 Silent p.S393S 0.43 TCGA-EA-A3HS-01 12 132428099 132428099 G A PUS1 Missense_Mutation p.E418K 0.47 tolerated(0.18) benign(0.007) TCGA-EA-A3HS-01 12 14613596 14613596 A G ATF7IP Missense_Mutation p.I776V 0.49 tolerated_low_confidence(0.9) unknown(0) TCGA-EA-A3HS-01 12 15699546 15699546 G A PTPRO Silent p.Q736Q 0.43 TCGA-EA-A3HS-01 12 16050901 16050901 G A STRAP Missense_Mutation p.G242S 0.43 tolerated(0.06) benign(0.397) TCGA-EA-A3HS-01 12 20833536 20833536 C T PDE3A 3'UTR 0.36 TCGA-EA-A3HS-01 12 2675744 2675744 C T CACNA1C Silent p.V555V 0.09 TCGA-EA-A3HS-01 12 2800177 2800177 G A CACNA1C Missense_Mutation p.A2125T 0.42 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EA-A3HS-01 12 2800203 2800203 C T CACNA1C Silent p.G2133G 0.48 TCGA-EA-A3HS-01 12 29736485 29736486 - A TMTC1 Frame_Shift_Ins p.V425Cfs*39 0.22 TCGA-EA-A3HS-01 12 33592483 33592483 T - SYT10 5'UTR 0.21 TCGA-EA-A3HS-01 12 40761445 40761457 GAGATACAATCTT - LRRK2 Splice_Site p.X2488_splice 0.29 TCGA-EA-A3HS-01 12 41900421 41900421 C T PDZRN4 Missense_Mutation p.T336M 0.43 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 12 46121106 46121106 G A ARID2 5'Flank 0.19 TCGA-EA-A3HS-01 12 47629098 47629098 C T PCED1B Silent p.S84S 0.38 TCGA-EA-A3HS-01 12 49170329 49170329 C T ADCY6 Missense_Mutation p.V473M 0.21 deleterious(0) probably_damaging(0.986) TCGA-EA-A3HS-01 12 4921210 4921210 C T KCNA6 3'UTR 0.44 TCGA-EA-A3HS-01 12 49413199 49413199 A - KMT2D 3'UTR 0.85 TCGA-EA-A3HS-01 12 49425038 49425038 G A KMT2D Nonsense_Mutation p.R4484* 0.31 TCGA-EA-A3HS-01 12 49425056 49425056 G A KMT2D Missense_Mutation p.R4478W 0.42 unknown(0) TCGA-EA-A3HS-01 12 49438082 49438082 C A KMT2D Missense_Mutation p.G1697C 0.31 probably_damaging(1) TCGA-EA-A3HS-01 12 50039483 50039483 C T FMNL3 3'UTR 0.31 TCGA-EA-A3HS-01 12 51092228 51092228 T A DIP2B Missense_Mutation p.D722E 0.45 tolerated(0.05) probably_damaging(0.998) TCGA-EA-A3HS-01 12 51382019 51382019 C T SLC11A2 3'UTR 0.51 TCGA-EA-A3HS-01 12 52450306 52450306 G A NR4A1 Silent p.R358R 0.51 TCGA-EA-A3HS-01 12 53346251 53346251 C T KRT18 Intron 0.33 TCGA-EA-A3HS-01 12 53899496 53899496 C T TARBP2 Nonsense_Mutation p.R269* 0.44 TCGA-EA-A3HS-01 12 54118512 54118512 C T CALCOCO1 Missense_Mutation p.R59Q 0.41 deleterious(0.01) probably_damaging(1) TCGA-EA-A3HS-01 12 54763757 54763757 G - ZNF385A 3'UTR 0.37 TCGA-EA-A3HS-01 12 56151174 56151174 A G SARNP 3'UTR 0.29 TCGA-EA-A3HS-01 12 56872887 56872887 C T GLS2 Silent p.T161T 0.17 TCGA-EA-A3HS-01 12 64238646 64238646 A G SRGAP1 Missense_Mutation p.Y17C 0.43 deleterious(0) possibly_damaging(0.541) TCGA-EA-A3HS-01 12 65146507 65146507 C T GNS Missense_Mutation p.G75R 0.32 deleterious(0) probably_damaging(0.922) TCGA-EA-A3HS-01 12 68052134 68052134 C T DYRK2 Missense_Mutation p.R483W 0.40 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 12 6943196 6943196 C T LEPREL2 Silent p.L480L 0.25 TCGA-EA-A3HS-01 12 6993447 6993447 C T RPL13P5 RNA 0.49 TCGA-EA-A3HS-01 12 7060882 7060882 C T PTPN6 Missense_Mutation p.S40L 0.19 deleterious(0) possibly_damaging(0.729) TCGA-EA-A3HS-01 12 78443774 78443774 T C NAV3 Silent p.G675G 0.44 TCGA-EA-A3HS-01 12 78516119 78516119 T C NAV3 Silent p.H1383H 0.50 TCGA-EA-A3HS-01 12 81205270 81205270 G A LIN7A Nonsense_Mutation p.Q226* 0.56 TCGA-EA-A3HS-01 12 8207905 8207905 A G FOXJ2 3'UTR 0.44 TCGA-EA-A3HS-01 12 8687149 8687149 G A CLEC4E 3'UTR 0.46 TCGA-EA-A3HS-01 12 90003791 90003791 G A ATP2B1 Missense_Mutation p.R789C 0.36 deleterious(0) possibly_damaging(0.885) TCGA-EA-A3HS-01 12 9265980 9265980 G A A2M Silent p.D82D 0.39 TCGA-EA-A3HS-01 12 939283 939283 C T WNK1 Missense_Mutation p.S423L 0.40 deleterious(0) unknown(0) TCGA-EA-A3HS-01 12 94620409 94620409 G A PLXNC1 Missense_Mutation p.A607T 0.38 tolerated(0.47) benign(0.001) TCGA-EA-A3HS-01 12 96181098 96181098 C T NTN4 Silent p.T68T 0.47 TCGA-EA-A3HS-01 13 101316573 101316573 C T TMTC4 Silent p.T79T 0.41 TCGA-EA-A3HS-01 13 101726973 101726973 A G NALCN Missense_Mutation p.M1332T 0.30 deleterious(0.02) possibly_damaging(0.811) TCGA-EA-A3HS-01 13 102521179 102521179 C A FGF14 Splice_Site p.X107_splice 0.43 TCGA-EA-A3HS-01 13 103510650 103510650 C T BIVM-ERCC5 Missense_Mutation p.A611V 0.19 deleterious(0.02) possibly_damaging(0.776) TCGA-EA-A3HS-01 13 108861737 108861737 T - LIG4 Frame_Shift_Del p.K627Sfs*8 0.12 TCGA-EA-A3HS-01 13 111372112 111372112 G A ING1 Missense_Mutation p.G368S 0.39 deleterious(0.02) probably_damaging(1) TCGA-EA-A3HS-01 13 113634018 113634018 C T MCF2L Intron 0.22 TCGA-EA-A3HS-01 13 25052282 25052282 G A PARP4 Silent p.Y527Y 0.17 TCGA-EA-A3HS-01 13 25670602 25670602 G A PABPC3 Missense_Mutation p.R89H 0.48 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HS-01 13 28880899 28880899 C T FLT1 Missense_Mutation p.G1244D 0.49 deleterious(0.01) benign(0.024) TCGA-EA-A3HS-01 13 32758758 32758758 C T FRY Nonsense_Mutation p.R1026* 0.29 TCGA-EA-A3HS-01 13 33590942 33590942 G A KL Missense_Mutation p.G122R 0.56 tolerated(0.06) possibly_damaging(0.651) TCGA-EA-A3HS-01 13 36049527 36049527 C T MAB21L1 Missense_Mutation p.C250Y 0.55 deleterious(0) probably_damaging(0.964) TCGA-EA-A3HS-01 13 37678796 37678796 G A CSNK1A1L Missense_Mutation p.R200C 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EA-A3HS-01 13 39587822 39587822 C A PROSER1 Missense_Mutation p.A523S 0.16 tolerated_low_confidence(0.05) benign(0.321) TCGA-EA-A3HS-01 13 39917692 39917692 A - LHFP 3'UTR 0.31 TCGA-EA-A3HS-01 13 45010699 45010699 T C TSC22D1 Intron 0.56 TCGA-EA-A3HS-01 13 45580364 45580364 C T GPALPP1 Silent p.D83D 0.52 TCGA-EA-A3HS-01 13 49782766 49782766 C T FNDC3A 3'UTR 0.32 TCGA-EA-A3HS-01 13 52603112 52603112 C T UTP14C Missense_Mutation p.R58W 0.10 tolerated(0.19) benign(0.002) TCGA-EA-A3HS-01 13 52952185 52952185 G A THSD1 Silent p.S640S 0.06 TCGA-EA-A3HS-01 13 70681451 70681451 C A KLHL1 Missense_Mutation p.E127D 0.38 tolerated_low_confidence(0.42) benign(0.004) TCGA-EA-A3HS-01 13 73336239 73336239 C T DIS3 Missense_Mutation p.A722T 0.33 deleterious(0) probably_damaging(0.994) TCGA-EA-A3HS-01 13 77730275 77730275 T A MYCBP2 Missense_Mutation p.D2240V 0.54 probably_damaging(0.972) TCGA-EA-A3HS-01 13 79979920 79979920 C T RBM26 5'UTR 0.39 TCGA-EA-A3HS-01 13 88328647 88328647 G A SLITRK5 Missense_Mutation p.R335H 0.52 deleterious(0) probably_damaging(0.943) TCGA-EA-A3HS-01 13 94938654 94938654 C T GPC6 Missense_Mutation p.S310L 0.31 tolerated(0.17) possibly_damaging(0.656) TCGA-EA-A3HS-01 13 99098982 99098982 C T FARP1 Silent p.S989S 0.11 TCGA-EA-A3HS-01 14 100744199 100744199 G C YY1 3'UTR 0.08 TCGA-EA-A3HS-01 14 103969423 103969423 G A MARK3 Silent p.A707A 0.37 TCGA-EA-A3HS-01 14 105223022 105223022 G A SIVA1 Missense_Mutation p.R132Q 0.38 tolerated(0.08) probably_damaging(0.995) TCGA-EA-A3HS-01 14 20344652 20344652 T G OR4K2 Missense_Mutation p.F76V 0.13 tolerated(0.61) probably_damaging(0.91) TCGA-EA-A3HS-01 14 21560741 21560741 C T ZNF219 Missense_Mutation p.E239K 0.59 tolerated_low_confidence(0.94) benign(0.003) TCGA-EA-A3HS-01 14 22090514 22090514 G A TRAV1-1 Silent p.T40T 0.30 TCGA-EA-A3HS-01 14 23058055 23058055 C T DAD1 Silent p.A3A 0.44 TCGA-EA-A3HS-01 14 23519129 23519129 C T CDH24 Missense_Mutation p.V501M 0.29 deleterious(0) benign(0.05) TCGA-EA-A3HS-01 14 23523478 23523478 G A CDH24 Missense_Mutation p.R282W 0.26 tolerated(0.08) possibly_damaging(0.79) TCGA-EA-A3HS-01 14 23594708 23594708 A - SLC7A8 3'UTR 0.37 TCGA-EA-A3HS-01 14 23855160 23855160 G A MYH6 Missense_Mutation p.R1714W 0.19 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HS-01 14 23884227 23884227 G A MYH7 Missense_Mutation p.R1846C 0.37 tolerated(0.12) probably_damaging(0.998) TCGA-EA-A3HS-01 14 24522950 24522950 G A LRRC16B Missense_Mutation p.V25M 0.37 tolerated(0.05) possibly_damaging(0.662) TCGA-EA-A3HS-01 14 24528104 24528104 G A LRRC16B Missense_Mutation p.D494N 0.10 deleterious(0) probably_damaging(0.977) TCGA-EA-A3HS-01 14 24847248 24847248 G A NFATC4 3'UTR 0.56 TCGA-EA-A3HS-01 14 24898191 24898191 G A CBLN3 Missense_Mutation p.L24F 0.46 tolerated(0.14) unknown(0) TCGA-EA-A3HS-01 14 24909401 24909401 C T SDR39U1 Missense_Mutation p.R257H 0.34 deleterious(0) probably_damaging(0.993) TCGA-EA-A3HS-01 14 29238447 29238447 T - FOXG1 3'UTR 0.32 TCGA-EA-A3HS-01 14 31858139 31858139 C T HEATR5A Missense_Mutation p.R282H 0.47 deleterious(0) probably_damaging(0.988) TCGA-EA-A3HS-01 14 35782116 35782116 C T PSMA6 Nonsense_Mutation p.Q147* 0.32 TCGA-EA-A3HS-01 14 36103935 36103935 T G RALGAPA1 Missense_Mutation p.Q1441P 0.39 tolerated(0.14) probably_damaging(0.996) TCGA-EA-A3HS-01 14 37145631 37145631 C T PAX9 Missense_Mutation p.H334Y 0.43 deleterious_low_confidence(0) benign(0.419) TCGA-EA-A3HS-01 14 39748655 39748655 C T CTAGE5 Nonsense_Mutation p.R74* 0.18 TCGA-EA-A3HS-01 14 73750864 73750864 G A NUMB Missense_Mutation p.R292C 0.12 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 14 73989372 73989372 C T HEATR4 Missense_Mutation p.R162H 0.22 tolerated(0.58) benign(0.001) TCGA-EA-A3HS-01 14 75302580 75302580 T - YLPM1 3'UTR 0.41 TCGA-EA-A3HS-01 14 76187032 76187032 G A TTLL5 Missense_Mutation p.R343H 0.20 deleterious(0.02) benign(0.304) TCGA-EA-A3HS-01 14 76437951 76437951 G A TGFB3 Missense_Mutation p.R155W 0.41 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 14 77494516 77494516 G A IRF2BPL 5'UTR 0.44 TCGA-EA-A3HS-01 14 79175866 79175866 G A NRXN3 Missense_Mutation p.V137M 0.31 tolerated(0.8) probably_damaging(0.992) TCGA-EA-A3HS-01 14 80328832 80328832 A - NRXN3 3'Flank 0.50 TCGA-EA-A3HS-01 14 81945992 81945992 G A SEL1L Silent p.G713G 0.33 TCGA-EA-A3HS-01 14 90769411 90769411 C T NRDE2 Missense_Mutation p.R355Q 0.20 tolerated(0.05) benign(0.087) TCGA-EA-A3HS-01 14 91647608 91647608 G A C14orf159 Missense_Mutation p.C270Y 0.34 tolerated(0.84) benign(0.015) TCGA-EA-A3HS-01 14 96730713 96730713 C T BDKRB1 Missense_Mutation p.R232W 0.39 deleterious(0.04) benign(0.212) TCGA-EA-A3HS-01 14 99637948 99637948 T - BCL11B 3'UTR 0.60 TCGA-EA-A3HS-01 15 23044814 23044815 - A NIPA1 3'UTR 0.26 TCGA-EA-A3HS-01 15 25200192 25200192 C T SNURF 5'UTR 0.50 TCGA-EA-A3HS-01 15 28000367 28000367 C T OCA2 3'UTR 0.43 TCGA-EA-A3HS-01 15 28419593 28419593 G A HERC2 Silent p.H3335H 0.18 TCGA-EA-A3HS-01 15 28465618 28465618 G A HERC2 Missense_Mutation p.S1942L 0.16 benign(0.211) TCGA-EA-A3HS-01 15 28513747 28513747 G A HERC2 Nonsense_Mutation p.Q488* 0.45 TCGA-EA-A3HS-01 15 29992658 29992658 A - TJP1 3'UTR 0.37 TCGA-EA-A3HS-01 15 32917327 32917327 G A ARHGAP11A Missense_Mutation p.A200T 0.05 deleterious(0) probably_damaging(0.971) TCGA-EA-A3HS-01 15 33024120 33024120 G A GREM1 3'UTR 0.12 TCGA-EA-A3HS-01 15 33926842 33926842 G A RYR3 Missense_Mutation p.R1028H 0.42 probably_damaging(0.991) TCGA-EA-A3HS-01 15 35271224 35271224 G T AC114546.1 5'UTR 0.44 TCGA-EA-A3HS-01 15 42162100 42162100 C T SPTBN5 Missense_Mutation p.R1931H 0.31 benign(0.021) TCGA-EA-A3HS-01 15 42436738 42436738 G A PLA2G4F Missense_Mutation p.R629C 0.12 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 15 42702819 42702819 G A CAPN3 Missense_Mutation p.G740S 0.41 deleterious(0.03) possibly_damaging(0.643) TCGA-EA-A3HS-01 15 43621439 43621439 G A LCMT2 Missense_Mutation p.R417C 0.38 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 15 44166618 44166618 C T FRMD5 Missense_Mutation p.R393H 0.24 tolerated(0.12) benign(0.01) TCGA-EA-A3HS-01 15 48063864 48063864 G A SEMA6D Missense_Mutation p.G1035D 0.44 tolerated(0.08) possibly_damaging(0.752) TCGA-EA-A3HS-01 15 48443355 48443355 A G MYEF2 Silent p.I440I 0.45 TCGA-EA-A3HS-01 15 50581860 50581860 C T GABPB1 Missense_Mutation p.A247T 0.36 tolerated(0.57) possibly_damaging(0.757) TCGA-EA-A3HS-01 15 51221295 51221295 G A AP4E1 Missense_Mutation p.R211Q 0.41 deleterious(0.04) benign(0.377) TCGA-EA-A3HS-01 15 57511755 57511755 C T TCF12 Intron 0.38 TCGA-EA-A3HS-01 15 58888605 58888605 A - ADAM10 3'UTR 0.47 TCGA-EA-A3HS-01 15 59171861 59171861 C A SLTM 3'UTR 0.30 TCGA-EA-A3HS-01 15 59429143 59429143 A T MYO1E 3'UTR 0.26 TCGA-EA-A3HS-01 15 63943520 63943520 G A HERC1 Missense_Mutation p.S3493F 0.26 benign(0.165) TCGA-EA-A3HS-01 15 65350883 65350883 G A RASL12 Missense_Mutation p.R103C 0.37 deleterious(0) probably_damaging(0.98) TCGA-EA-A3HS-01 15 66777404 66777404 C T MAP2K1 Missense_Mutation p.A257V 0.18 tolerated(0.11) benign(0.119) TCGA-EA-A3HS-01 15 70349951 70349951 C T TLE3 Silent p.A369A 0.22 TCGA-EA-A3HS-01 15 71184488 71184488 C T THAP10 Missense_Mutation p.A42T 0.40 tolerated(0.06) probably_damaging(0.965) TCGA-EA-A3HS-01 15 73528769 73528769 C T NEO1 Missense_Mutation p.T458M 0.45 deleterious(0.03) probably_damaging(0.943) TCGA-EA-A3HS-01 15 73994850 73994850 G A CD276 Missense_Mutation p.V112M 0.37 deleterious(0) probably_damaging(0.993) TCGA-EA-A3HS-01 15 74565146 74565146 G T CCDC33 Missense_Mutation p.G225W 0.18 deleterious(0) probably_damaging(0.991) TCGA-EA-A3HS-01 15 78211133 78211133 C T RP11-114H24.7 Intron 0.36 TCGA-EA-A3HS-01 15 81296263 81296263 T - MESDC1 3'UTR 0.50 TCGA-EA-A3HS-01 15 83215935 83215935 G A CPEB1 Silent p.S484S 0.40 TCGA-EA-A3HS-01 15 83932207 83932207 C T BNC1 Missense_Mutation p.G599E 0.19 tolerated(0.59) benign(0.006) TCGA-EA-A3HS-01 15 84683293 84683293 G T ADAMTSL3 Splice_Site p.X1325_splice 0.32 TCGA-EA-A3HS-01 15 86266404 86266404 C T AKAP13 Missense_Mutation p.R2204C 0.43 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 15 88522442 88522442 C T NTRK3 Intron 0.38 TCGA-EA-A3HS-01 15 88678386 88678386 G T NTRK3 Missense_Mutation p.L384M 0.34 deleterious(0.05) benign(0.285) TCGA-EA-A3HS-01 15 89760522 89760522 G A RLBP1 Missense_Mutation p.R59W 0.20 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 16 1400937 1400937 G A TSR3 Missense_Mutation p.P133S 0.29 deleterious(0) probably_damaging(0.977) TCGA-EA-A3HS-01 16 1560995 1560995 C T IFT140 Missense_Mutation p.A1447T 0.17 tolerated(0.56) unknown(0) TCGA-EA-A3HS-01 16 15771722 15771722 C T NDE1 Missense_Mutation p.A101V 0.42 deleterious(0.01) benign(0.375) TCGA-EA-A3HS-01 16 16263612 16263612 G A ABCC6 Silent p.F962F 0.38 TCGA-EA-A3HS-01 16 16337021 16337021 C T NOMO3 Missense_Mutation p.P102L 0.28 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 16 1826958 1826958 C T SPSB3 3'UTR 0.52 TCGA-EA-A3HS-01 16 19548462 19548462 G A CCP110 Missense_Mutation p.A491T 0.45 tolerated(0.52) benign(0.079) TCGA-EA-A3HS-01 16 20043470 20043470 G A GPR139 Missense_Mutation p.R217C 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-EA-A3HS-01 16 20870883 20870883 A C DCUN1D3 3'UTR 0.44 TCGA-EA-A3HS-01 16 2164293 2164293 C T PKD1 Missense_Mutation p.V911M 0.41 possibly_damaging(0.717) TCGA-EA-A3HS-01 16 2168360 2168360 G A PKD1 Silent p.S211S 0.31 TCGA-EA-A3HS-01 16 2218154 2218154 C T TRAF7 Silent p.D72D 0.32 TCGA-EA-A3HS-01 16 2258458 2258458 G A MLST8 Missense_Mutation p.A236T 0.47 deleterious(0.02) probably_damaging(0.909) TCGA-EA-A3HS-01 16 2284942 2284942 G A E4F1 Silent p.P625P 0.45 TCGA-EA-A3HS-01 16 23424810 23424810 G T COG7 Silent p.S456S 0.30 TCGA-EA-A3HS-01 16 28994229 28994229 G A SPNS1 Missense_Mutation p.A403T 0.32 tolerated(0.18) possibly_damaging(0.823) TCGA-EA-A3HS-01 16 29676611 29676611 A G SPN 3'UTR 0.38 TCGA-EA-A3HS-01 16 29825686 29825686 C T PRRT2 Silent p.D304D 0.40 TCGA-EA-A3HS-01 16 29994551 29994551 A G TAOK2 Silent p.E386E 0.22 TCGA-EA-A3HS-01 16 29994976 29994976 C T TAOK2 Silent p.T471T 0.39 TCGA-EA-A3HS-01 16 30410501 30410501 C A ZNF48 3'UTR 0.26 TCGA-EA-A3HS-01 16 30747706 30747706 C T SRCAP Silent p.L2305L 0.39 TCGA-EA-A3HS-01 16 319768 319768 C T ITFG3 3'UTR 0.29 TCGA-EA-A3HS-01 16 32888970 32888970 G A SLC6A10P RNA 0.09 TCGA-EA-A3HS-01 16 3340413 3340413 G A ZNF263 Missense_Mutation p.C636Y 0.47 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 16 347967 347967 G A AXIN1 Silent p.H513H 0.39 TCGA-EA-A3HS-01 16 47005388 47005388 C T DNAJA2 Missense_Mutation p.G79S 0.46 tolerated(0.43) benign(0.006) TCGA-EA-A3HS-01 16 4934380 4934380 G A PPL Missense_Mutation p.R1426W 0.38 deleterious(0) probably_damaging(0.955) TCGA-EA-A3HS-01 16 4944500 4944500 G - PPL Frame_Shift_Del p.T455Qfs*37 0.37 TCGA-EA-A3HS-01 16 50707293 50707293 G A SNX20 3'UTR 0.34 TCGA-EA-A3HS-01 16 5108541 5108541 C A C16orf89 Missense_Mutation p.G194C 0.46 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 16 5134591 5134591 G A FAM86A 3'UTR 0.34 TCGA-EA-A3HS-01 16 5140300 5140300 C T FAM86A Missense_Mutation p.C176Y 0.23 deleterious(0.01) benign(0.06) TCGA-EA-A3HS-01 16 55360382 55360382 G A IRX6 Silent p.A60A 0.40 TCGA-EA-A3HS-01 16 57279122 57279122 G A ARL2BP 5'UTR 0.30 TCGA-EA-A3HS-01 16 57546439 57546439 C T CCDC102A 3'UTR 0.71 TCGA-EA-A3HS-01 16 57850849 57850849 C T CTD-2600O9.1 3'UTR 0.29 TCGA-EA-A3HS-01 16 58030855 58030855 G A ZNF319 Missense_Mutation p.R439C 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-EA-A3HS-01 16 58079101 58079101 G A MMP15 Silent p.A587A 0.13 TCGA-EA-A3HS-01 16 65319329 65319329 C T LINC00922 RNA 0.30 TCGA-EA-A3HS-01 16 66646522 66646522 C T CMTM3 Silent p.S177S 0.33 TCGA-EA-A3HS-01 16 67997875 67997875 G A SLC12A4 Intron 0.45 TCGA-EA-A3HS-01 16 69988452 69988452 C T CLEC18A Silent p.N144N 0.46 TCGA-EA-A3HS-01 16 71890056 71890056 G A ATXN1L 3'UTR 0.35 TCGA-EA-A3HS-01 16 71895824 71895824 C T ZNF821 Missense_Mutation p.A147T 0.45 tolerated(0.29) benign(0.09) TCGA-EA-A3HS-01 16 7568354 7568354 C T RBFOX1 Missense_Mutation p.A98V 0.39 deleterious(0.03) benign(0.247) TCGA-EA-A3HS-01 16 77328951 77328951 C T ADAMTS18 Missense_Mutation p.V959M 0.39 tolerated(0.29) benign(0.1) TCGA-EA-A3HS-01 16 84215975 84215975 G A TAF1C Missense_Mutation p.S185L 0.49 tolerated(0.62) probably_damaging(0.947) TCGA-EA-A3HS-01 16 84216910 84216910 G A TAF1C Silent p.D116D 0.18 TCGA-EA-A3HS-01 16 84779155 84779155 G A USP10 Silent p.P356P 0.53 TCGA-EA-A3HS-01 16 86613749 86613749 G T FOXL1 3'UTR 0.45 TCGA-EA-A3HS-01 16 88873692 88873692 C T CDT1 Nonsense_Mutation p.R427* 0.38 TCGA-EA-A3HS-01 16 89294417 89294417 C T ZNF778 Missense_Mutation p.S546L 0.42 deleterious(0) probably_damaging(0.968) TCGA-EA-A3HS-01 16 89653491 89653491 G A CPNE7 Missense_Mutation p.G378D 0.38 deleterious(0) probably_damaging(0.978) TCGA-EA-A3HS-01 16 89980460 89980460 C T MC1R 5'Flank 0.04 TCGA-EA-A3HS-01 16 89981000 89981000 G A MC1R 5'Flank 0.41 TCGA-EA-A3HS-01 17 10543713 10543713 C T MYH3 Missense_Mutation p.R788Q 0.42 tolerated(0.18) benign(0.002) TCGA-EA-A3HS-01 17 1421309 1421309 T - PITPNA 3'UTR 0.33 TCGA-EA-A3HS-01 17 15457010 15457010 A G TVP23C Missense_Mutation p.W77R 0.41 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 17 16320962 16320962 G A TRPV2 5'UTR 0.56 TCGA-EA-A3HS-01 17 1703974 1703974 G A SMYD4 Silent p.C238C 0.27 TCGA-EA-A3HS-01 17 17116985 17116985 G A FLCN Missense_Mutation p.S575L 0.31 tolerated_low_confidence(0.07) benign(0.001) TCGA-EA-A3HS-01 17 17909551 17909551 G A LRRC48 Missense_Mutation p.E396K 0.51 deleterious(0.01) benign(0.256) TCGA-EA-A3HS-01 17 17971491 17971491 T C GID4 3'UTR 0.27 TCGA-EA-A3HS-01 17 18856873 18856873 C A SLC5A10 Intron 0.25 TCGA-EA-A3HS-01 17 19232038 19232038 G A EPN2 Missense_Mutation p.A388T 0.37 tolerated(0.55) benign(0.005) TCGA-EA-A3HS-01 17 1940223 1940223 G A DPH1 Missense_Mutation p.R223Q 0.17 tolerated(0.18) benign(0.055) TCGA-EA-A3HS-01 17 19458933 19458933 C A SLC47A1 Silent p.S223S 0.04 TCGA-EA-A3HS-01 17 21476964 21476964 G A AC138710.1 5'Flank 0.35 TCGA-EA-A3HS-01 17 27420010 27420010 G A MYO18A Missense_Mutation p.R1646W 0.24 deleterious(0) probably_damaging(0.978) TCGA-EA-A3HS-01 17 28419859 28419859 A G EFCAB5 Missense_Mutation p.Y1409C 0.48 tolerated(0.07) probably_damaging(0.946) TCGA-EA-A3HS-01 17 2909313 2909313 C T RAP1GAP2 Missense_Mutation p.S446L 0.50 deleterious(0) possibly_damaging(0.853) TCGA-EA-A3HS-01 17 29701671 29701671 T - NF1 3'UTR 0.50 TCGA-EA-A3HS-01 17 29848944 29848944 C T RAB11FIP4 Missense_Mutation p.T257M 0.54 tolerated(0.05) probably_damaging(0.996) TCGA-EA-A3HS-01 17 3119554 3119554 A G OR1A1 Missense_Mutation p.I214V 0.15 tolerated(0.19) benign(0.026) TCGA-EA-A3HS-01 17 32908124 32908124 G C TMEM132E Missense_Mutation p.G10A 0.49 tolerated_low_confidence(0.47) unknown(0) TCGA-EA-A3HS-01 17 35300394 35300395 - C LHX1 Frame_Shift_Ins p.E399Rfs*106 0.43 TCGA-EA-A3HS-01 17 35578712 35578712 G A ACACA Missense_Mutation p.R1206C 0.36 deleterious(0.05) probably_damaging(0.959) TCGA-EA-A3HS-01 17 35896101 35896101 T C SYNRG Missense_Mutation p.M1216V 0.36 deleterious(0.04) probably_damaging(0.959) TCGA-EA-A3HS-01 17 36499425 36499425 C T GPR179 Missense_Mutation p.R83H 0.31 tolerated(0.46) benign(0.001) TCGA-EA-A3HS-01 17 3660327 3660327 C T ITGAE Silent p.A374A 0.45 TCGA-EA-A3HS-01 17 39021157 39021157 G A KRT12 Silent p.R236R 0.40 TCGA-EA-A3HS-01 17 3923013 3923013 G A ZZEF1 Silent p.Y2485Y 0.46 TCGA-EA-A3HS-01 17 40126132 40126132 C T CNP 3'UTR 0.17 TCGA-EA-A3HS-01 17 40452810 40452810 C T STAT5A Missense_Mutation p.P304L 0.41 deleterious(0.01) benign(0.183) TCGA-EA-A3HS-01 17 40696149 40696149 G A NAGLU Missense_Mutation p.V709I 0.37 tolerated(0.43) benign(0.032) TCGA-EA-A3HS-01 17 40994867 40994867 C A PSME3 3'UTR 0.47 TCGA-EA-A3HS-01 17 42992767 42992767 G A GFAP Missense_Mutation p.R30C 0.24 deleterious(0.01) possibly_damaging(0.857) TCGA-EA-A3HS-01 17 43005534 43005534 C T KIF18B Silent p.P712P 0.39 TCGA-EA-A3HS-01 17 43340593 43340593 G A SPATA32 5'Flank 0.29 TCGA-EA-A3HS-01 17 43473886 43473886 C T ARHGAP27 Missense_Mutation p.V373M 0.58 deleterious(0.01) probably_damaging(0.998) TCGA-EA-A3HS-01 17 46002401 46002401 G A SP2 Missense_Mutation p.G497R 0.50 deleterious(0.01) benign(0.042) TCGA-EA-A3HS-01 17 46148160 46148160 T A CBX1 3'UTR 0.18 TCGA-EA-A3HS-01 17 46188126 46188126 C G SNX11 5'UTR 0.53 TCGA-EA-A3HS-01 17 46196425 46196425 T C SNX11 Missense_Mutation p.V139A 0.40 tolerated(0.18) possibly_damaging(0.844) TCGA-EA-A3HS-01 17 54452024 54452024 A G ANKFN1 Missense_Mutation p.S290G 0.48 tolerated(0.17) benign(0.085) TCGA-EA-A3HS-01 17 5462892 5462892 G T NLRP1 Missense_Mutation p.S375Y 0.39 tolerated(0.72) benign(0.175) TCGA-EA-A3HS-01 17 55191897 55191897 G A AKAP1 Silent p.Q727Q 0.39 TCGA-EA-A3HS-01 17 56384172 56384172 A C BZRAP1 Missense_Mutation p.L1714R 0.46 tolerated(0.18) benign(0.042) TCGA-EA-A3HS-01 17 56598369 56598369 G A SEPT4 Missense_Mutation p.R438W 0.31 deleterious(0.01) benign(0.119) TCGA-EA-A3HS-01 17 58286756 58286756 C T USP32 Missense_Mutation p.R858Q 0.32 deleterious(0) probably_damaging(0.949) TCGA-EA-A3HS-01 17 62121466 62121466 T C ERN1 Missense_Mutation p.H939R 0.42 tolerated(1) benign(0.001) TCGA-EA-A3HS-01 17 62594564 62594564 G A SMURF2 Nonsense_Mutation p.Q46* 0.40 TCGA-EA-A3HS-01 17 65871704 65871704 G A BPTF Intron 0.54 TCGA-EA-A3HS-01 17 66426180 66426180 G A WIPI1 Missense_Mutation p.R308C 0.39 deleterious(0.03) probably_damaging(0.953) TCGA-EA-A3HS-01 17 6941553 6941553 G A SLC16A13 Silent p.G142G 0.41 TCGA-EA-A3HS-01 17 7129558 7129558 C T DVL2 Missense_Mutation p.E613K 0.29 tolerated(0.78) possibly_damaging(0.635) TCGA-EA-A3HS-01 17 71434220 71434220 G A SDK2 Missense_Mutation p.R267C 0.45 deleterious(0) probably_damaging(0.988) TCGA-EA-A3HS-01 17 72725470 72725470 G A RAB37 Missense_Mutation p.G50S 0.37 tolerated(0.13) possibly_damaging(0.872) TCGA-EA-A3HS-01 17 73126611 73126611 C T NT5C Missense_Mutation p.S193N 0.43 deleterious(0.04) benign(0.021) TCGA-EA-A3HS-01 17 73886776 73886776 C A TRIM65 3'UTR 0.44 TCGA-EA-A3HS-01 17 74277985 74277985 G A QRICH2 Missense_Mutation p.A1242V 0.35 tolerated(0.22) benign(0.025) TCGA-EA-A3HS-01 17 7466636 7466636 G A SENP3 Silent p.E81E 0.42 TCGA-EA-A3HS-01 17 76235148 76235148 G A TMEM235 Silent p.S151S 0.19 TCGA-EA-A3HS-01 17 7752568 7752568 C T KDM6B Missense_Mutation p.R988W 0.36 probably_damaging(0.942) TCGA-EA-A3HS-01 17 7800590 7800590 G A CHD3 Missense_Mutation p.V692I 0.19 benign(0.312) TCGA-EA-A3HS-01 17 7833983 7833983 G A TRAPPC1 Missense_Mutation p.R127C 0.37 deleterious(0.05) benign(0.021) TCGA-EA-A3HS-01 17 79410863 79410863 G A RP11-1055B8.7 Silent p.A748A 0.42 TCGA-EA-A3HS-01 17 79426628 79426628 G A RP11-1055B8.7 Missense_Mutation p.R1968Q 0.44 benign(0.032) TCGA-EA-A3HS-01 17 79612477 79612477 G A TSPAN10 Missense_Mutation p.V166M 0.42 tolerated(0.08) benign(0.001) TCGA-EA-A3HS-01 17 80332415 80332415 C T UTS2R Missense_Mutation p.T72M 0.18 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HS-01 17 8730534 8730534 G A PIK3R6 Silent p.S490S 0.43 TCGA-EA-A3HS-01 18 21426327 21426327 C T LAMA3 Silent p.G1262G 0.33 TCGA-EA-A3HS-01 18 31323992 31323992 G A ASXL3 Missense_Mutation p.A1394T 0.33 benign(0.014) TCGA-EA-A3HS-01 18 34323995 34323995 G A FHOD3 Missense_Mutation p.A1119T 0.33 deleterious(0.01) possibly_damaging(0.472) TCGA-EA-A3HS-01 18 47095866 47095866 C T LIPG Silent p.H173H 0.51 TCGA-EA-A3HS-01 18 51681391 51681391 G A MBD2 3'UTR 0.37 TCGA-EA-A3HS-01 18 56204076 56204076 C T ALPK2 Missense_Mutation p.D1115N 0.45 deleterious(0.03) benign(0.372) TCGA-EA-A3HS-01 18 59221952 59221952 G A CDH20 3'UTR 0.38 TCGA-EA-A3HS-01 18 60245589 60245589 C T ZCCHC2 3'UTR 0.31 TCGA-EA-A3HS-01 18 61329118 61329118 A G SERPINB3 5'UTR 0.29 TCGA-EA-A3HS-01 18 72914003 72914003 C T ZADH2 Missense_Mutation p.G168R 0.33 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 18 77211059 77211059 C T NFATC1 Silent p.R552R 0.31 TCGA-EA-A3HS-01 18 77659679 77659679 G A KCNG2 Missense_Mutation p.A422T 0.44 tolerated(0.39) possibly_damaging(0.871) TCGA-EA-A3HS-01 19 10112499 10112499 G A COL5A3 Missense_Mutation p.T303M 0.41 unknown(0) TCGA-EA-A3HS-01 19 10184669 10184669 C T C3P1 RNA 0.40 TCGA-EA-A3HS-01 19 10225651 10225651 C T P2RY11 3'UTR 0.40 TCGA-EA-A3HS-01 19 10291101 10291101 C G DNMT1 Missense_Mutation p.D124H 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.745) TCGA-EA-A3HS-01 19 10404376 10404376 G A ICAM5 Missense_Mutation p.A490T 0.21 tolerated(0.07) benign(0.158) TCGA-EA-A3HS-01 19 10473108 10473108 G A TYK2 Missense_Mutation p.R501W 0.46 deleterious(0) possibly_damaging(0.462) TCGA-EA-A3HS-01 19 10823815 10823815 C T QTRT1 Missense_Mutation p.R361C 0.18 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HS-01 19 11569016 11569016 C T ELAVL3 Silent p.P191P 0.43 TCGA-EA-A3HS-01 19 12384448 12384448 A - ZNF44 Frame_Shift_Del p.W256Gfs*34 0.28 TCGA-EA-A3HS-01 19 12692195 12692195 C T ZNF490 Missense_Mutation p.A232T 0.59 tolerated(0.58) benign(0.026) TCGA-EA-A3HS-01 19 12767763 12767763 G A MAN2B1 Silent p.R509R 0.42 TCGA-EA-A3HS-01 19 13198853 13198853 G A NFIX Intron 0.16 TCGA-EA-A3HS-01 19 13923900 13923900 C T ZSWIM4 Missense_Mutation p.L368F 0.28 tolerated(0.36) possibly_damaging(0.765) TCGA-EA-A3HS-01 19 14076269 14076269 G A RFX1 Missense_Mutation p.R735W 0.48 deleterious(0) possibly_damaging(0.586) TCGA-EA-A3HS-01 19 14266095 14266095 C A LPHN1 Intron 0.39 TCGA-EA-A3HS-01 19 14694191 14694191 G T CLEC17A Missense_Mutation p.E22D 0.40 tolerated_low_confidence(0.52) benign(0.003) TCGA-EA-A3HS-01 19 15083610 15083610 C T SLC1A6 Missense_Mutation p.R38H 0.46 deleterious(0.03) probably_damaging(0.98) TCGA-EA-A3HS-01 19 1535114 1535114 G T PLK5 Missense_Mutation p.E292D 0.37 tolerated(0.11) benign(0.027) TCGA-EA-A3HS-01 19 15905135 15905135 G A OR10H5 Missense_Mutation p.A93T 0.11 tolerated(0.24) benign(0.002) TCGA-EA-A3HS-01 19 16243803 16243803 C T RAB8A 3'UTR 0.16 TCGA-EA-A3HS-01 19 1650215 1650215 G A TCF3 Silent p.G11G 0.41 TCGA-EA-A3HS-01 19 16908560 16908560 C T NWD1 Missense_Mutation p.R1108W 0.42 tolerated(0.06) probably_damaging(0.988) TCGA-EA-A3HS-01 19 17057980 17057980 G A CPAMD8 Missense_Mutation p.R903C 0.13 deleterious(0.05) probably_damaging(0.931) TCGA-EA-A3HS-01 19 17373593 17373593 C T USHBP1 Missense_Mutation p.R137H 0.17 tolerated(0.05) benign(0.181) TCGA-EA-A3HS-01 19 17397291 17397291 G A ANKLE1 Missense_Mutation p.R593H 0.42 deleterious(0) benign(0.074) TCGA-EA-A3HS-01 19 17766926 17766926 T A UNC13A Missense_Mutation p.E350V 0.34 tolerated_low_confidence(0.09) benign(0) TCGA-EA-A3HS-01 19 1816513 1816513 C T REXO1 Missense_Mutation p.V1125I 0.58 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 19 18679432 18679432 G T KXD1 Silent p.T174T 0.24 TCGA-EA-A3HS-01 19 19360881 19360882 - T NCAN 3'UTR 0.26 TCGA-EA-A3HS-01 19 19420945 19420945 G A SUGP1 Nonsense_Mutation p.Q91* 0.16 TCGA-EA-A3HS-01 19 19612024 19612024 C T GATAD2A Silent p.S433S 0.19 TCGA-EA-A3HS-01 19 19625361 19625361 C T TSSK6 3'UTR 0.31 TCGA-EA-A3HS-01 19 19655270 19655270 C A CILP2 Missense_Mutation p.T639N 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-EA-A3HS-01 19 20229754 20229754 G A ZNF90 Missense_Mutation p.R464H 0.30 tolerated(0.62) benign(0.012) TCGA-EA-A3HS-01 19 21265089 21265089 C A ZNF714 5'UTR 0.42 TCGA-EA-A3HS-01 19 22364053 22364053 G T ZNF676 Missense_Mutation p.L156I 0.41 tolerated(0.09) probably_damaging(0.942) TCGA-EA-A3HS-01 19 23544966 23544966 C T ZNF91 Missense_Mutation p.G272D 0.30 deleterious(0.03) probably_damaging(0.955) TCGA-EA-A3HS-01 19 30308110 30308110 G A CCNE1 Missense_Mutation p.D83N 0.32 tolerated(0.12) benign(0.01) TCGA-EA-A3HS-01 19 32845131 32845131 C T ZNF507 Silent p.D465D 0.40 TCGA-EA-A3HS-01 19 33482856 33482856 G A RHPN2 Missense_Mutation p.S506L 0.40 deleterious(0.01) benign(0.262) TCGA-EA-A3HS-01 19 36517589 36517589 G A CLIP3 Missense_Mutation p.T154M 0.41 deleterious(0.02) possibly_damaging(0.841) TCGA-EA-A3HS-01 19 36575579 36575579 C T WDR62 Silent p.D525D 0.32 TCGA-EA-A3HS-01 19 36884652 36884652 G A ZFP82 Missense_Mutation p.P197L 0.47 tolerated(0.07) probably_damaging(1) TCGA-EA-A3HS-01 19 38993229 38993229 C T RYR1 Missense_Mutation p.A2566V 0.41 benign(0.07) TCGA-EA-A3HS-01 19 39003117 39003117 G A RYR1 Missense_Mutation p.V3156I 0.40 benign(0.001) TCGA-EA-A3HS-01 19 40541613 40541613 C A ZNF780B Missense_Mutation p.G385C 0.37 deleterious(0) probably_damaging(0.993) TCGA-EA-A3HS-01 19 41932380 41932380 C T B3GNT8 Missense_Mutation p.A102T 0.30 tolerated(0.33) probably_damaging(0.996) TCGA-EA-A3HS-01 19 42872776 42872776 G A MEGF8 Missense_Mutation p.G2081D 0.47 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 19 42914844 42914844 G A LIPE Missense_Mutation p.A345V 0.40 tolerated(0.16) probably_damaging(0.97) TCGA-EA-A3HS-01 19 4525003 4525003 C T PLIN5 Missense_Mutation p.R269H 0.67 tolerated(0.16) benign(0.004) TCGA-EA-A3HS-01 19 45284161 45284161 G T CBLC Splice_Site p.X118_splice 0.17 TCGA-EA-A3HS-01 19 4543093 4543093 G A SEMA6B 3'UTR 0.42 TCGA-EA-A3HS-01 19 46321266 46321266 C T SYMPK Missense_Mutation p.R1011H 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-EA-A3HS-01 19 4793347 4793347 C T FEM1A Missense_Mutation p.A494V 0.39 tolerated(0.43) benign(0.415) TCGA-EA-A3HS-01 19 48305531 48305531 G A TPRX1 Missense_Mutation p.P246L 0.36 deleterious(0.01) unknown(0) TCGA-EA-A3HS-01 19 49464219 49464219 C T BAX Silent p.T174T 0.27 TCGA-EA-A3HS-01 19 49674859 49674859 C G TRPM4 Missense_Mutation p.Q295E 0.40 tolerated(0.16) benign(0.016) TCGA-EA-A3HS-01 19 501873 501873 G A MADCAM1 Missense_Mutation p.R291H 0.35 tolerated(0.57) benign(0.001) TCGA-EA-A3HS-01 19 50411522 50411522 G A NUP62 Missense_Mutation p.R515C 0.45 tolerated(0.05) benign(0.177) TCGA-EA-A3HS-01 19 51165859 51165859 G A SHANK1 Missense_Mutation p.P1950L 0.50 unknown(0) TCGA-EA-A3HS-01 19 51220083 51220083 C T SHANK1 Missense_Mutation p.G32R 0.31 probably_damaging(0.98) TCGA-EA-A3HS-01 19 52000188 52000188 G A SIGLEC12 Silent p.G515G 0.39 TCGA-EA-A3HS-01 19 53207575 53207575 A G ZNF611 3'UTR 0.42 TCGA-EA-A3HS-01 19 53321263 53321263 C T ZNF28 5'UTR 0.38 TCGA-EA-A3HS-01 19 53644667 53644667 G A ZNF347 Missense_Mutation p.L473F 0.07 deleterious(0.03) probably_damaging(0.926) TCGA-EA-A3HS-01 19 54629987 54629987 G T PRPF31 Missense_Mutation p.G314W 0.51 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 19 54710305 54710305 G A RPS9 Missense_Mutation p.V128M 0.37 deleterious(0) possibly_damaging(0.632) TCGA-EA-A3HS-01 19 55693505 55693505 C T PTPRH Missense_Mutation p.R1026H 0.54 probably_damaging(0.965) TCGA-EA-A3HS-01 19 55816697 55816697 G A BRSK1 Missense_Mutation p.A576T 0.45 tolerated(0.07) benign(0.259) TCGA-EA-A3HS-01 19 56935404 56935404 T C ZNF583 Silent p.T459T 0.52 TCGA-EA-A3HS-01 19 57036353 57036353 C T ZNF471 Missense_Mutation p.A306V 0.48 tolerated(0.6) probably_damaging(0.958) TCGA-EA-A3HS-01 19 57175789 57175789 G A ZNF835 Missense_Mutation p.R260C 0.08 tolerated(0.14) probably_damaging(0.98) TCGA-EA-A3HS-01 19 58324764 58324764 C A ZNF552 Missense_Mutation p.A20S 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-EA-A3HS-01 19 58361843 58361843 C T CTD-2583A14.10 Intron 0.12 TCGA-EA-A3HS-01 19 58374333 58374334 - T ZNF587 3'UTR 0.43 TCGA-EA-A3HS-01 19 59059435 59059435 G A TRIM28 Missense_Mutation p.R330Q 0.38 tolerated(0.88) benign(0.055) TCGA-EA-A3HS-01 19 59067487 59067487 C T UBE2M Missense_Mutation p.G174D 0.38 tolerated(0.3) possibly_damaging(0.809) TCGA-EA-A3HS-01 19 6751275 6751275 G A TRIP10 3'UTR 0.45 TCGA-EA-A3HS-01 19 7676415 7676415 C A CAMSAP3 Missense_Mutation p.S406Y 0.33 tolerated(0.07) possibly_damaging(0.823) TCGA-EA-A3HS-01 19 7763716 7763716 C T FCER2 Missense_Mutation p.R16Q 0.35 tolerated(0.07) benign(0.033) TCGA-EA-A3HS-01 19 7805409 7805409 A C CD209 3'UTR 0.41 TCGA-EA-A3HS-01 1 100889837 100889837 C - CDC14A Frame_Shift_Del p.Y126Ifs*64 0.29 TCGA-EA-A3HS-01 1 100964773 100964773 C A CDC14A Silent p.T570T 0.64 TCGA-EA-A3HS-01 1 109350120 109350120 C T STXBP3 Missense_Mutation p.R545C 0.42 deleterious(0) probably_damaging(0.976) TCGA-EA-A3HS-01 1 109479732 109479732 T C CLCC1 Silent p.A450A 0.41 TCGA-EA-A3HS-01 1 110714681 110714681 G T SLC6A17 Splice_Site p.X96_splice 0.35 TCGA-EA-A3HS-01 1 110768704 110768704 C T KCNC4 Nonsense_Mutation p.R575* 0.07 TCGA-EA-A3HS-01 1 1111412 1111412 G A TTLL10 Intron 0.04 TCGA-EA-A3HS-01 1 113255584 113255584 G A PPM1J Missense_Mutation p.R171W 0.43 deleterious(0) possibly_damaging(0.895) TCGA-EA-A3HS-01 1 113456517 113456517 A C SLC16A1 Missense_Mutation p.V500G 0.16 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-EA-A3HS-01 1 118539247 118539247 C A SPAG17 Missense_Mutation p.Q1632H 0.59 tolerated(0.24) possibly_damaging(0.694) TCGA-EA-A3HS-01 1 12008070 12008070 C T PLOD1 Silent p.T38T 0.36 TCGA-EA-A3HS-01 1 1222932 1222932 C T SCNN1D Missense_Mutation p.T452M 0.38 deleterious(0) probably_damaging(0.994) TCGA-EA-A3HS-01 1 12438584 12438584 C T VPS13D Missense_Mutation p.R3674C 0.39 possibly_damaging(0.537) TCGA-EA-A3HS-01 1 145606334 145606334 C T POLR3C Missense_Mutation p.E207K 0.25 tolerated(0.07) benign(0.02) TCGA-EA-A3HS-01 1 147131819 147131819 A C ACP6 Silent p.A97A 0.15 TCGA-EA-A3HS-01 1 150444400 150444400 C T RPRD2 Silent p.G992G 0.15 TCGA-EA-A3HS-01 1 150484307 150484307 C T ECM1 Silent p.A388A 0.23 TCGA-EA-A3HS-01 1 151039887 151039887 G T MLLT11 Missense_Mutation p.G63C 0.65 deleterious(0.02) possibly_damaging(0.847) TCGA-EA-A3HS-01 1 151686912 151686912 G A AL589765.1 3'UTR 0.16 TCGA-EA-A3HS-01 1 153430422 153430422 C T S100A7 Missense_Mutation p.A56T 0.12 tolerated(0.36) benign(0.001) TCGA-EA-A3HS-01 1 154067525 154067526 - A NUP210L Frame_Shift_Ins p.L691Ffs*21 0.30 TCGA-EA-A3HS-01 1 154144813 154144813 C T TPM3 Intron 0.68 TCGA-EA-A3HS-01 1 155223963 155223963 G A FAM189B Missense_Mutation p.S102L 0.27 deleterious(0.04) probably_damaging(0.986) TCGA-EA-A3HS-01 1 155306197 155306197 C T ASH1L 3'UTR 0.52 TCGA-EA-A3HS-01 1 156261225 156261225 G A TMEM79 Missense_Mutation p.G341S 0.58 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 1 156849795 156849795 G C NTRK1 Missense_Mutation p.G684A 0.62 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 1 157095114 157095114 C T ETV3 Missense_Mutation p.R353Q 0.70 deleterious(0) probably_damaging(0.93) TCGA-EA-A3HS-01 1 15833446 15833446 C T CASP9 Missense_Mutation p.R193H 0.19 deleterious(0) probably_damaging(0.994) TCGA-EA-A3HS-01 1 160054162 160054162 C A KCNJ9 Silent p.S114S 0.14 TCGA-EA-A3HS-01 1 160206928 160206928 G A DCAF8 Missense_Mutation p.A319V 0.43 deleterious(0.03) possibly_damaging(0.465) TCGA-EA-A3HS-01 1 160314282 160314282 G A NCSTN Intron 0.23 TCGA-EA-A3HS-01 1 160322740 160322740 G A NCSTN Missense_Mutation p.V354M 0.30 deleterious(0.04) possibly_damaging(0.594) TCGA-EA-A3HS-01 1 160396210 160396210 G A VANGL2 3'UTR 0.24 TCGA-EA-A3HS-01 1 160722003 160722003 A G SLAMF7 Missense_Mutation p.N301D 0.23 deleterious(0.05) possibly_damaging(0.848) TCGA-EA-A3HS-01 1 160808277 160808277 G A CD244 Silent p.Y271Y 0.21 TCGA-EA-A3HS-01 1 161088167 161088167 G C NIT1 Intron 0.73 TCGA-EA-A3HS-01 1 161130995 161130995 C T USP21 Missense_Mutation p.R189W 0.28 deleterious_low_confidence(0) benign(0.325) TCGA-EA-A3HS-01 1 16256243 16256243 C T SPEN Nonsense_Mutation p.R1170* 0.23 TCGA-EA-A3HS-01 1 16462199 16462199 G - EPHA2 Frame_Shift_Del p.P460Rfs*33 0.37 TCGA-EA-A3HS-01 1 167086612 167086612 C T DUSP27 Silent p.L85L 0.28 TCGA-EA-A3HS-01 1 167385339 167385339 A G POU2F1 3'UTR 0.25 TCGA-EA-A3HS-01 1 170695377 170695377 G A PRRX1 Missense_Mutation p.R145Q 0.57 deleterious(0) probably_damaging(0.986) TCGA-EA-A3HS-01 1 171254589 171254589 G C FMO1 Missense_Mutation p.R502P 0.25 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 1 171761364 171761364 G C METTL13 Missense_Mutation p.G561A 0.63 tolerated(0.79) benign(0.016) TCGA-EA-A3HS-01 1 173878961 173878961 G A SERPINC1 Silent p.R294R 0.36 TCGA-EA-A3HS-01 1 173931232 173931232 A G RC3H1 Silent p.G611G 0.69 TCGA-EA-A3HS-01 1 176664948 176664948 G A PAPPA2 Missense_Mutation p.R900Q 0.63 deleterious(0.04) benign(0.018) TCGA-EA-A3HS-01 1 179035949 179035949 C T FAM20B Missense_Mutation p.S318L 0.08 tolerated(0.64) benign(0.004) TCGA-EA-A3HS-01 1 180083186 180083186 T A CEP350 3'UTR 0.26 TCGA-EA-A3HS-01 1 180166226 180166226 C A QSOX1 3'UTR 0.75 TCGA-EA-A3HS-01 1 180945371 180945371 G A STX6 3'UTR 0.27 TCGA-EA-A3HS-01 1 182873378 182873378 T G SHCBP1L Silent p.T508T 0.29 TCGA-EA-A3HS-01 1 183471444 183471444 G A SMG7 Intron 0.20 TCGA-EA-A3HS-01 1 185069839 185069839 T - RNF2 3'UTR 0.42 TCGA-EA-A3HS-01 1 185125915 185125915 G A TRMT1L 5'UTR 0.57 TCGA-EA-A3HS-01 1 186141145 186141145 C T HMCN1 Silent p.N5232N 0.10 TCGA-EA-A3HS-01 1 19446747 19446747 G A UBR4 Missense_Mutation p.R3413C 0.50 probably_damaging(0.963) TCGA-EA-A3HS-01 1 203456041 203456041 G A PRELP 3'UTR 0.16 TCGA-EA-A3HS-01 1 20517879 20517880 - G UBXN10 Frame_Shift_Ins p.E277Gfs*12 0.33 TCGA-EA-A3HS-01 1 205897047 205897047 C T SLC26A9 Missense_Mutation p.D362N 0.57 tolerated(0.4) benign(0.044) TCGA-EA-A3HS-01 1 207040758 207040758 G T IL20 Missense_Mutation p.E136D 0.40 deleterious(0.03) possibly_damaging(0.755) TCGA-EA-A3HS-01 1 213415024 213415024 G A RPS6KC1 Silent p.R735R 0.39 TCGA-EA-A3HS-01 1 215409863 215409864 - T KCNK2 3'UTR 0.35 TCGA-EA-A3HS-01 1 216373124 216373125 - A USH2A Frame_Shift_Ins p.S1219Ffs*7 0.17 TCGA-EA-A3HS-01 1 221879716 221879716 C T DUSP10 Missense_Mutation p.A302T 0.56 tolerated(0.25) benign(0.035) TCGA-EA-A3HS-01 1 22207277 22207277 G A HSPG2 Missense_Mutation p.R624C 0.46 probably_damaging(0.999) TCGA-EA-A3HS-01 1 226784533 226784533 G A C1orf95 Missense_Mutation p.C78Y 0.30 deleterious(0) probably_damaging(0.982) TCGA-EA-A3HS-01 1 227221060 227221060 C T CDC42BPA Missense_Mutation p.R1143Q 0.36 deleterious(0.01) probably_damaging(0.913) TCGA-EA-A3HS-01 1 228248848 228248848 C T WNT3A 3'UTR 0.51 TCGA-EA-A3HS-01 1 228285772 228285772 C T ARF1 3'UTR 0.34 TCGA-EA-A3HS-01 1 231483667 231483667 T A SPRTN Missense_Mutation p.I149K 0.41 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 1 235875443 235875443 C T LYST Missense_Mutation p.R3280Q 0.51 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HS-01 1 238053228 238053228 G A ZP4 Silent p.G113G 0.15 TCGA-EA-A3HS-01 1 240371664 240371664 A G FMN2 Missense_Mutation p.I1184M 0.28 unknown(0) TCGA-EA-A3HS-01 1 24433698 24433698 G T MYOM3 Silent p.T89T 0.45 TCGA-EA-A3HS-01 1 246829755 246829755 G A CNST 3'UTR 0.52 TCGA-EA-A3HS-01 1 29040903 29040903 G A GMEB1 Missense_Mutation p.R447H 0.40 tolerated(0.14) probably_damaging(0.991) TCGA-EA-A3HS-01 1 29585818 29585818 G A PTPRU Missense_Mutation p.G175S 0.40 deleterious(0.01) benign(0.023) TCGA-EA-A3HS-01 1 32222058 32222058 C T BAI2 Missense_Mutation p.R127Q 0.36 tolerated(0.34) benign(0.032) TCGA-EA-A3HS-01 1 32681515 32681515 A G DCDC2B 3'UTR 0.35 TCGA-EA-A3HS-01 1 35223274 35223274 C T GJB5 Missense_Mutation p.R115C 0.53 deleterious(0.04) benign(0.009) TCGA-EA-A3HS-01 1 36292388 36292388 G A AGO4 Missense_Mutation p.R267Q 0.47 deleterious(0) possibly_damaging(0.458) TCGA-EA-A3HS-01 1 3703825 3703825 G A LRRC47 Missense_Mutation p.A222V 0.18 deleterious(0.01) probably_damaging(0.937) TCGA-EA-A3HS-01 1 38463799 38463799 G A FHL3 Missense_Mutation p.R113W 0.37 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 1 41486267 41486267 C A SLFNL1 Missense_Mutation p.E22D 0.47 tolerated_low_confidence(0.16) benign(0.079) TCGA-EA-A3HS-01 1 41990535 41990535 C A HIVEP3 Missense_Mutation p.G1752W 0.42 probably_damaging(1) TCGA-EA-A3HS-01 1 43162569 43162569 G A YBX1 Missense_Mutation p.R204H 0.36 tolerated(0.26) benign(0) TCGA-EA-A3HS-01 1 43396325 43396325 C G SLC2A1 Missense_Mutation p.G163A 0.45 tolerated(0.94) benign(0.057) TCGA-EA-A3HS-01 1 43903336 43903336 C T SZT2 Nonsense_Mutation p.R2064* 0.43 TCGA-EA-A3HS-01 1 44686769 44686769 G A ERI3 3'UTR 0.35 TCGA-EA-A3HS-01 1 46087924 46087924 C T CCDC17 Missense_Mutation p.R319Q 0.48 tolerated(0.42) benign(0.001) TCGA-EA-A3HS-01 1 46120226 46120229 CTTC TTTTT GPBP1L1 Frame_Shift_Ins p.E155Kfs*34 0.32 TCGA-EA-A3HS-01 1 52242568 52242568 G A OSBPL9 Missense_Mutation p.A422T 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-EA-A3HS-01 1 52552851 52552851 G A BTF3L4 3'UTR 0.41 TCGA-EA-A3HS-01 1 52811994 52811994 C T ZFYVE9 3'UTR 0.33 TCGA-EA-A3HS-01 1 53724090 53724090 A G LRP8 Missense_Mutation p.C704R 0.28 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 1 54692410 54692410 T A SSBP3 3'UTR 0.28 TCGA-EA-A3HS-01 1 64117371 64117371 G A PGM1 Missense_Mutation p.A456T 0.14 deleterious(0.03) possibly_damaging(0.811) TCGA-EA-A3HS-01 1 6530885 6530885 G T PLEKHG5 Silent p.P563P 0.50 TCGA-EA-A3HS-01 1 67263855 67263855 C T INSL5 Silent p.P83P 0.46 TCGA-EA-A3HS-01 1 68619277 68619277 C T WLS Silent p.T240T 0.44 TCGA-EA-A3HS-01 1 78326949 78326950 - T FAM73A Frame_Shift_Ins p.L441Ffs*9 0.34 TCGA-EA-A3HS-01 1 874743 874743 C T SAMD11 Silent p.S203S 0.15 TCGA-EA-A3HS-01 1 87597799 87597799 C T RP5-1052I5.2 Intron 0.38 TCGA-EA-A3HS-01 1 9655960 9655960 G A TMEM201 Silent p.T42T 0.35 TCGA-EA-A3HS-01 1 9784964 9784964 C T PIK3CD Silent p.L989L 0.44 TCGA-EA-A3HS-01 20 10619581 10619581 T - JAG1 3'UTR 0.29 TCGA-EA-A3HS-01 20 21492250 21492250 C T NKX2-2 3'UTR 0.15 TCGA-EA-A3HS-01 20 2442528 2442528 C T SNRPB Intron 0.47 TCGA-EA-A3HS-01 20 307252 307252 G T SOX12 Missense_Mutation p.E228D 0.46 tolerated(0.21) unknown(0) TCGA-EA-A3HS-01 20 32264549 32264549 G - E2F1 Frame_Shift_Del p.L435Wfs*58 0.32 TCGA-EA-A3HS-01 20 3268311 3268311 C T C20orf194 Missense_Mutation p.R818H 0.53 tolerated(0.05) possibly_damaging(0.595) TCGA-EA-A3HS-01 20 33299028 33299028 G A TP53INP2 3'UTR 0.36 TCGA-EA-A3HS-01 20 35422750 35422750 A G SOGA1 Silent p.P1245P 0.47 TCGA-EA-A3HS-01 20 3677922 3677922 G A SIGLEC1 Silent p.N730N 0.50 TCGA-EA-A3HS-01 20 37536563 37536563 G A PPP1R16B Missense_Mutation p.S338N 0.23 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 20 42744326 42744326 C A JPH2 Missense_Mutation p.E663D 0.31 tolerated(0.43) benign(0) TCGA-EA-A3HS-01 20 44596429 44596429 C T ZNF335 Missense_Mutation p.R253Q 0.35 deleterious(0) possibly_damaging(0.703) TCGA-EA-A3HS-01 20 44669383 44669383 T C SLC12A5 Intron 0.32 TCGA-EA-A3HS-01 20 4854621 4854621 C T SLC23A2 Missense_Mutation p.V355M 0.48 deleterious(0) possibly_damaging(0.787) TCGA-EA-A3HS-01 20 48741647 48741647 G A TMEM189 Intron 0.15 TCGA-EA-A3HS-01 20 5154234 5154234 C T CDS2 Silent p.S41S 0.60 TCGA-EA-A3HS-01 20 5528441 5528441 G A GPCPD1 Missense_Mutation p.R629C 0.64 deleterious(0.03) possibly_damaging(0.724) TCGA-EA-A3HS-01 20 56814335 56814335 G A PPP4R1L 3'UTR 0.31 TCGA-EA-A3HS-01 20 60736558 60736558 C T SS18L1 Missense_Mutation p.H100Y 0.38 deleterious(0) probably_damaging(0.925) TCGA-EA-A3HS-01 20 60988467 60988467 G A RBBP8NL Silent p.D555D 0.43 TCGA-EA-A3HS-01 20 61522305 61522305 C T DIDO1 Intron 0.35 TCGA-EA-A3HS-01 20 61593978 61593978 C T SLC17A9 Missense_Mutation p.T167M 0.51 tolerated(0.07) possibly_damaging(0.532) TCGA-EA-A3HS-01 20 62076627 62076627 G A KCNQ2 Missense_Mutation p.R160W 0.40 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 20 62076647 62076647 C T KCNQ2 Missense_Mutation p.R153Q 0.45 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 20 62384043 62384043 G A ZBTB46 Missense_Mutation p.T465M 0.43 deleterious(0) possibly_damaging(0.732) TCGA-EA-A3HS-01 21 35147400 35147400 G T ITSN1 Missense_Mutation p.Q528H 0.47 deleterious(0.01) probably_damaging(0.99) TCGA-EA-A3HS-01 21 35890249 35890249 G A RCAN1 3'UTR 0.45 TCGA-EA-A3HS-01 21 44524529 44524529 G C U2AF1 Intron 0.36 TCGA-EA-A3HS-01 21 45671514 45671514 C T DNMT3L Missense_Mutation p.R254H 0.25 tolerated(1) benign(0) TCGA-EA-A3HS-01 21 45798980 45798980 C T TRPM2 Missense_Mutation p.S372L 0.39 deleterious(0.02) benign(0.356) TCGA-EA-A3HS-01 21 46640907 46640907 G A ADARB1 Missense_Mutation p.R675H 0.35 deleterious(0.05) probably_damaging(0.991) TCGA-EA-A3HS-01 21 47852020 47852020 G A PCNT Missense_Mutation p.R2881Q 0.19 possibly_damaging(0.602) TCGA-EA-A3HS-01 22 16256555 16256555 C A POTEH 3'UTR 0.09 TCGA-EA-A3HS-01 22 17601241 17601241 G A CECR6 Silent p.G259G 0.50 TCGA-EA-A3HS-01 22 20103197 20103197 G A TRMT2A Nonsense_Mutation p.Q236* 0.36 TCGA-EA-A3HS-01 22 20759924 20759924 C T ZNF74 Missense_Mutation p.R201C 0.34 tolerated(0.06) benign(0.057) TCGA-EA-A3HS-01 22 21288098 21288098 G T CRKL Missense_Mutation p.A115S 0.40 tolerated(0.45) benign(0.039) TCGA-EA-A3HS-01 22 21538048 21538048 G A FAM230B RNA 0.09 TCGA-EA-A3HS-01 22 21742908 21742908 G - RIMBP3B Frame_Shift_Del p.G1589Afs*9 0.21 TCGA-EA-A3HS-01 22 21802071 21802071 G A HIC2 3'UTR 0.52 TCGA-EA-A3HS-01 22 22986529 22986529 C T GGTLC2 5'Flank 0.33 TCGA-EA-A3HS-01 22 23438507 23438507 C T GNAZ Missense_Mutation p.R209C 0.24 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 22 23524396 23524396 G A BCR Missense_Mutation p.D417N 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-EA-A3HS-01 22 23627259 23627259 C T BCR Silent p.L759L 0.32 TCGA-EA-A3HS-01 22 24086625 24086625 G A ZNF70 Missense_Mutation p.R235W 0.36 tolerated(0.18) probably_damaging(0.955) TCGA-EA-A3HS-01 22 26100140 26100140 G A ADRBK2 Missense_Mutation p.R431Q 0.39 deleterious(0) probably_damaging(0.91) TCGA-EA-A3HS-01 22 26937112 26937112 G A TPST2 Missense_Mutation p.T162M 0.36 deleterious(0) possibly_damaging(0.846) TCGA-EA-A3HS-01 22 29709356 29709356 C T RASL10A Silent p.A182A 0.54 TCGA-EA-A3HS-01 22 29724731 29724731 C T AP1B1 3'UTR 0.49 TCGA-EA-A3HS-01 22 30077551 30077551 C T NF2 Silent p.S566S 0.41 TCGA-EA-A3HS-01 22 31484713 31484713 G A SMTN Missense_Mutation p.R108H 0.34 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 22 32016577 32016577 C - PISD Frame_Shift_Del p.A289Pfs*33 0.31 TCGA-EA-A3HS-01 22 32019742 32019742 G A PISD Silent p.T49T 0.42 TCGA-EA-A3HS-01 22 32215155 32215155 G A DEPDC5 Missense_Mutation p.R605Q 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-EA-A3HS-01 22 32275715 32275715 G A DEPDC5 Missense_Mutation p.R1328Q 0.43 tolerated(0.19) probably_damaging(0.997) TCGA-EA-A3HS-01 22 37271736 37271736 C T NCF4 Silent p.F223F 0.46 TCGA-EA-A3HS-01 22 37482432 37482432 G A TMPRSS6 Silent p.P297P 0.31 TCGA-EA-A3HS-01 22 37637141 37637141 G A RAC2 Intron 0.35 TCGA-EA-A3HS-01 22 38046214 38046214 G A SH3BP1 Missense_Mutation p.V458I 0.37 tolerated(0.82) benign(0.083) TCGA-EA-A3HS-01 22 39411712 39411712 C T APOBEC3C Missense_Mutation p.R44C 0.09 tolerated(0.19) benign(0.326) TCGA-EA-A3HS-01 22 39814798 39814798 C T TAB1 Silent p.N204N 0.34 TCGA-EA-A3HS-01 22 40366925 40366925 G A GRAP2 Missense_Mutation p.R277Q 0.45 tolerated(0.07) benign(0.085) TCGA-EA-A3HS-01 22 40657951 40657951 C T TNRC6B Silent p.N77N 0.39 TCGA-EA-A3HS-01 22 40731028 40731028 T - TNRC6B 3'UTR 0.41 TCGA-EA-A3HS-01 22 40802129 40802129 G A SGSM3 Missense_Mutation p.V288M 0.45 deleterious(0) probably_damaging(0.992) TCGA-EA-A3HS-01 22 40820311 40820311 C T MKL1 Missense_Mutation p.E126K 0.40 deleterious(0.01) probably_damaging(0.955) TCGA-EA-A3HS-01 22 41605762 41605762 C T L3MBTL2 Silent p.G29G 0.19 TCGA-EA-A3HS-01 22 41829923 41829923 T A TOB2 3'UTR 0.38 TCGA-EA-A3HS-01 22 42537543 42537543 C T NDUFA6-AS1 3'Flank 0.36 TCGA-EA-A3HS-01 22 42607540 42607540 G A TCF20 Missense_Mutation p.R1258C 0.57 probably_damaging(0.999) TCGA-EA-A3HS-01 22 45689181 45689181 G A UPK3A Missense_Mutation p.A231T 0.22 tolerated(0.26) benign(0.075) TCGA-EA-A3HS-01 22 47059742 47059742 G A GRAMD4 Missense_Mutation p.E203K 0.33 tolerated(0.06) benign(0.437) TCGA-EA-A3HS-01 22 50319072 50319072 C T CRELD2 Silent p.D341D 0.22 TCGA-EA-A3HS-01 22 50655230 50655230 G A SELO Missense_Mutation p.R538Q 0.41 tolerated(0.38) benign(0.004) TCGA-EA-A3HS-01 2 100623194 100623194 C T AFF3 Missense_Mutation p.S283N 0.36 tolerated(0.23) benign(0.002) TCGA-EA-A3HS-01 2 10140774 10140774 C T GRHL1 Missense_Mutation p.T599I 0.39 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 2 108507198 108507198 G A RGPD4 3'UTR 0.43 TCGA-EA-A3HS-01 2 109511500 109511500 G - EDAR 3'UTR 0.43 TCGA-EA-A3HS-01 2 11054111 11054111 G A KCNF1 3'UTR 0.19 TCGA-EA-A3HS-01 2 110917730 110917730 G A NPHP1 Missense_Mutation p.R409C 0.34 deleterious(0) probably_damaging(0.979) TCGA-EA-A3HS-01 2 112945046 112945046 C T FBLN7 Missense_Mutation p.S428F 0.47 tolerated(0.21) probably_damaging(0.982) TCGA-EA-A3HS-01 2 113147477 113147477 G A RGPD8 Silent p.N1015N 0.43 TCGA-EA-A3HS-01 2 120723205 120723205 G A PTPN4 Missense_Mutation p.V848I 0.42 tolerated(0.33) benign(0.004) TCGA-EA-A3HS-01 2 121052255 121052255 T - RALB 3'UTR 0.50 TCGA-EA-A3HS-01 2 122159194 122159194 C T CLASP1 Missense_Mutation p.D931N 0.41 deleterious(0) possibly_damaging(0.61) TCGA-EA-A3HS-01 2 122205010 122205010 G A CLASP1 Silent p.N605N 0.35 TCGA-EA-A3HS-01 2 127957006 127957006 C T CYP27C1 Silent p.T166T 0.47 TCGA-EA-A3HS-01 2 128381771 128381771 G A MYO7B Missense_Mutation p.R1282H 0.22 deleterious(0.03) probably_damaging(0.964) TCGA-EA-A3HS-01 2 128410030 128410030 G A GPR17 3'UTR 0.42 TCGA-EA-A3HS-01 2 128461138 128461138 C T WDR33 3'UTR 0.51 TCGA-EA-A3HS-01 2 131524385 131524385 C T AMER3 3'UTR 0.30 TCGA-EA-A3HS-01 2 131883461 131883461 C T PLEKHB2 Missense_Mutation p.T58M 0.32 tolerated(0.17) benign(0.028) TCGA-EA-A3HS-01 2 137814207 137814207 C T THSD7B Silent p.Y119Y 0.48 TCGA-EA-A3HS-01 2 139429087 139429087 T C NXPH2 Missense_Mutation p.K67R 0.38 tolerated(0.14) benign(0.015) TCGA-EA-A3HS-01 2 141294257 141294257 G T LRP1B Missense_Mutation p.A2512D 0.41 benign(0.003) TCGA-EA-A3HS-01 2 145277669 145277669 G A ZEB2 5'UTR 0.52 TCGA-EA-A3HS-01 2 148657041 148657041 A - ACVR2A Frame_Shift_Del p.D96Tfs*54 0.44 TCGA-EA-A3HS-01 2 149241093 149241093 G A MBD5 Intron 0.47 TCGA-EA-A3HS-01 2 152976586 152976587 - A STAM2 3'UTR 0.47 TCGA-EA-A3HS-01 2 16745313 16745313 G A FAM49A Missense_Mutation p.A81V 0.36 tolerated(0.15) benign(0.273) TCGA-EA-A3HS-01 2 178416149 178416149 C T TTC30B Missense_Mutation p.R448H 0.14 tolerated(0.11) benign(0.03) TCGA-EA-A3HS-01 2 178482087 178482087 C T TTC30A Missense_Mutation p.R448H 0.31 tolerated(0.11) benign(0.041) TCGA-EA-A3HS-01 2 179411981 179411981 G A TTN Missense_Mutation p.A31424V 0.44 TCGA-EA-A3HS-01 2 179604427 179604427 T C TTN Silent p.S4511S 0.20 TCGA-EA-A3HS-01 2 181846810 181846810 G A UBE2E3 Missense_Mutation p.S14N 0.24 tolerated_low_confidence(0.2) benign(0.213) TCGA-EA-A3HS-01 2 183730848 183730848 C T FRZB Missense_Mutation p.G145S 0.41 deleterious(0.01) possibly_damaging(0.739) TCGA-EA-A3HS-01 2 1842980 1842980 G A MYT1L Silent p.C1005C 0.51 TCGA-EA-A3HS-01 2 186672512 186672512 C G FSIP2 Missense_Mutation p.T6249S 0.33 possibly_damaging(0.706) TCGA-EA-A3HS-01 2 18766227 18766227 C T NT5C1B Silent p.T152T 0.38 TCGA-EA-A3HS-01 2 196834814 196834814 C T DNAH7 Missense_Mutation p.R688Q 0.43 deleterious(0.03) benign(0.406) TCGA-EA-A3HS-01 2 198260806 198260806 C T SF3B1 Silent p.P1171P 0.58 TCGA-EA-A3HS-01 2 199011705 199011705 C T PLCL1 3'UTR 0.33 TCGA-EA-A3HS-01 2 201752390 201752390 C T PPIL3 5'UTR 0.32 TCGA-EA-A3HS-01 2 20232972 20232972 A G LAPTM4A Silent p.P232P 0.50 TCGA-EA-A3HS-01 2 206166298 206166298 A - PARD3B Frame_Shift_Del p.T775Rfs*13 0.29 TCGA-EA-A3HS-01 2 207988651 207988651 C T KLF7 Missense_Mutation p.V194I 0.38 tolerated(0.33) benign(0.001) TCGA-EA-A3HS-01 2 210596081 210596081 T A MAP2 3'UTR 0.67 TCGA-EA-A3HS-01 2 210761096 210761096 G A UNC80 Missense_Mutation p.G1448S 0.34 benign(0.284) TCGA-EA-A3HS-01 2 213864733 213864733 T C IKZF2 3'UTR 0.30 TCGA-EA-A3HS-01 2 219130315 219130315 C T AAMP Missense_Mutation p.G324S 0.41 tolerated(0.15) possibly_damaging(0.505) TCGA-EA-A3HS-01 2 220046186 220046186 G A FAM134A Splice_Site p.X293_splice 0.54 TCGA-EA-A3HS-01 2 220353833 220353833 C T SPEG Missense_Mutation p.T2736I 0.47 benign(0.305) TCGA-EA-A3HS-01 2 225338617 225338617 C A CUL3 3'UTR 0.43 TCGA-EA-A3HS-01 2 232263364 232263364 C T B3GNT7 Missense_Mutation p.R312C 0.48 deleterious(0) probably_damaging(0.967) TCGA-EA-A3HS-01 2 233681711 233681711 G A GIGYF2 Missense_Mutation p.R801Q 0.26 unknown(0) TCGA-EA-A3HS-01 2 234113020 234113020 G A INPP5D Missense_Mutation p.G1063D 0.33 deleterious_low_confidence(0.04) benign(0.182) TCGA-EA-A3HS-01 2 239005510 239005510 G A SCLY Missense_Mutation p.G401R 0.17 deleterious(0.04) possibly_damaging(0.642) TCGA-EA-A3HS-01 2 239974305 239974305 A T HDAC4 3'UTR 0.65 TCGA-EA-A3HS-01 2 24086326 24086326 A - ATAD2B Frame_Shift_Del p.F468Lfs*9 0.37 TCGA-EA-A3HS-01 2 241511849 241511849 C A RNPEPL1 5'UTR 0.40 TCGA-EA-A3HS-01 2 242431061 242431061 C T FARP2 Silent p.S918S 0.33 TCGA-EA-A3HS-01 2 24431162 24431162 G A ITSN2 Missense_Mutation p.A1541V 0.50 tolerated(0.08) unknown(0) TCGA-EA-A3HS-01 2 27001109 27001109 C T SLC35F6 Silent p.S282S 0.34 TCGA-EA-A3HS-01 2 27245096 27245096 A G MAPRE3 Missense_Mutation p.N4D 0.33 deleterious(0) probably_damaging(0.925) TCGA-EA-A3HS-01 2 27480097 27480097 C T SLC30A3 Silent p.A234A 0.38 TCGA-EA-A3HS-01 2 29225539 29225539 G A FAM179A Missense_Mutation p.G189R 0.41 tolerated(0.13) benign(0.032) TCGA-EA-A3HS-01 2 32362002 32362002 C T SPAST Missense_Mutation p.R460C 0.41 deleterious(0.01) benign(0.17) TCGA-EA-A3HS-01 2 32477583 32477583 T C NLRC4 Missense_Mutation p.H56R 0.59 tolerated(0.13) possibly_damaging(0.502) TCGA-EA-A3HS-01 2 37096710 37096710 C T STRN Missense_Mutation p.A496T 0.31 tolerated(0.11) benign(0.01) TCGA-EA-A3HS-01 2 37441067 37441067 G A CEBPZ Missense_Mutation p.R829W 0.33 deleterious(0.02) possibly_damaging(0.677) TCGA-EA-A3HS-01 2 40342182 40342182 C T SLC8A1 3'UTR 0.22 TCGA-EA-A3HS-01 2 48026014 48026014 C T MSH6 Nonsense_Mutation p.R298* 0.59 TCGA-EA-A3HS-01 2 49210073 49210073 C T FSHR Missense_Mutation p.G216R 0.40 deleterious(0) probably_damaging(0.968) TCGA-EA-A3HS-01 2 5835856 5835856 G A SOX11 3'UTR 0.53 TCGA-EA-A3HS-01 2 5837353 5837353 C T SOX11 3'UTR 0.55 TCGA-EA-A3HS-01 2 64120485 64120485 C T VPS54 3'UTR 0.45 TCGA-EA-A3HS-01 2 70166271 70166271 T - MXD1 3'UTR 0.19 TCGA-EA-A3HS-01 2 70454866 70454866 C T TIA1 Splice_Site p.X133_splice 0.45 TCGA-EA-A3HS-01 2 71047648 71047648 C T CLEC4F Missense_Mutation p.G3D 0.50 tolerated(0.15) benign(0.02) TCGA-EA-A3HS-01 2 71215290 71215290 T A TEX261 3'UTR 0.50 TCGA-EA-A3HS-01 2 71662050 71662050 A G ZNF638 3'UTR 0.29 TCGA-EA-A3HS-01 2 73315470 73315470 C T RAB11FIP5 Missense_Mutation p.A426T 0.28 tolerated(0.06) benign(0.005) TCGA-EA-A3HS-01 2 79350073 79350073 G A REG1A Missense_Mutation p.S143N 0.36 tolerated(0.69) benign(0.397) TCGA-EA-A3HS-01 2 80085208 80085208 T C CTNNA2 Missense_Mutation p.M123T 0.47 deleterious(0.02) probably_damaging(0.95) TCGA-EA-A3HS-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.31 TCGA-EA-A3HS-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.44 TCGA-EA-A3HS-01 2 98376145 98376145 C T TMEM131 Missense_Mutation p.A1726T 0.41 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-EA-A3HS-01 3 100091562 100091562 C T TOMM70A Missense_Mutation p.R447H 0.09 deleterious(0) probably_damaging(0.991) TCGA-EA-A3HS-01 3 101083757 101083757 C T SENP7 Missense_Mutation p.R466H 0.23 tolerated(1) benign(0) TCGA-EA-A3HS-01 3 108072380 108072380 C T HHLA2 Silent p.S57S 0.30 TCGA-EA-A3HS-01 3 108107842 108107842 C T MYH15 Missense_Mutation p.R1857Q 0.19 deleterious(0.01) probably_damaging(0.955) TCGA-EA-A3HS-01 3 108129503 108129503 G C MYH15 Silent p.L1494L 0.22 TCGA-EA-A3HS-01 3 113679540 113679540 T - ZDHHC23 Intron 0.20 TCGA-EA-A3HS-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.18 TCGA-EA-A3HS-01 3 119396213 119396213 C T COX17 5'UTR 0.25 TCGA-EA-A3HS-01 3 121340480 121340480 C T FBXO40 Silent p.S68S 0.63 TCGA-EA-A3HS-01 3 124209621 124209621 C T KALRN Missense_Mutation p.R1491W 0.70 deleterious(0) possibly_damaging(0.714) TCGA-EA-A3HS-01 3 126207102 126207102 C T UROC1 Missense_Mutation p.V637M 0.13 deleterious(0) probably_damaging(0.99) TCGA-EA-A3HS-01 3 127410650 127410650 G A MGLL 3'UTR 0.20 TCGA-EA-A3HS-01 3 129116144 129116144 G A EFCAB12 3'Flank 0.17 TCGA-EA-A3HS-01 3 129290410 129290410 C T PLXND1 Missense_Mutation p.R1093H 0.42 tolerated(0.12) benign(0.009) TCGA-EA-A3HS-01 3 130442364 130442364 A G PIK3R4 Silent p.S625S 0.27 TCGA-EA-A3HS-01 3 134079065 134079065 G A AMOTL2 Missense_Mutation p.T589M 0.12 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 3 139062896 139062896 C A MRPS22 Missense_Mutation p.L10M 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.653) TCGA-EA-A3HS-01 3 141167283 141167283 T - ZBTB38 3'UTR 0.17 TCGA-EA-A3HS-01 3 147128172 147128172 C T ZIC1 Silent p.S91S 0.33 TCGA-EA-A3HS-01 3 148896330 148896330 G A CP Missense_Mutation p.A917V 0.28 tolerated(0.32) benign(0.002) TCGA-EA-A3HS-01 3 151161329 151161329 G A IGSF10 Silent p.D1802D 0.66 TCGA-EA-A3HS-01 3 152880838 152880838 A G RAP2B Missense_Mutation p.D119G 0.26 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 3 155393921 155393921 G - PLCH1 5'Flank 0.38 TCGA-EA-A3HS-01 3 160122156 160122156 A G SMC4 Missense_Mutation p.Y184C 0.14 tolerated(0.45) benign(0.005) TCGA-EA-A3HS-01 3 16216581 16216581 G A GALNT15 5'UTR 0.77 TCGA-EA-A3HS-01 3 169644846 169644846 C T SAMD7 Missense_Mutation p.H266Y 0.30 deleterious(0.04) possibly_damaging(0.454) TCGA-EA-A3HS-01 3 171830294 171830294 G A FNDC3B Missense_Mutation p.D9N 0.19 deleterious(0.03) probably_damaging(0.957) TCGA-EA-A3HS-01 3 184019697 184019697 G A PSMD2 Missense_Mutation p.R181Q 0.27 tolerated(0.43) benign(0.004) TCGA-EA-A3HS-01 3 184300079 184300079 C T EPHB3 3'UTR 0.23 TCGA-EA-A3HS-01 3 186503991 186503991 G T EIF4A2 Missense_Mutation p.D186Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 3 186954299 186954299 G A MASP1 Nonsense_Mutation p.R454* 0.24 TCGA-EA-A3HS-01 3 194126757 194126757 G A ATP13A3 Missense_Mutation p.A1191V 0.09 tolerated(0.13) possibly_damaging(0.815) TCGA-EA-A3HS-01 3 195451832 195451832 G A MUC20 Missense_Mutation p.E120K 0.10 tolerated(0.71) possibly_damaging(0.603) TCGA-EA-A3HS-01 3 197607428 197607428 G A LRCH3 Missense_Mutation p.V130I 0.28 tolerated(0.25) benign(0.175) TCGA-EA-A3HS-01 3 25761538 25761538 G A NGLY1 Nonsense_Mutation p.R586* 0.79 TCGA-EA-A3HS-01 3 28562495 28562495 C T ZCWPW2 Missense_Mutation p.T266M 0.72 deleterious(0) probably_damaging(0.912) TCGA-EA-A3HS-01 3 38317885 38317885 C T SLC22A13 Missense_Mutation p.R449W 0.14 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 3 38592405 38592405 C T SCN5A Missense_Mutation p.A1820T 0.76 tolerated(0.56) probably_damaging(0.998) TCGA-EA-A3HS-01 3 38628905 38628905 G A SCN5A Missense_Mutation p.R808C 0.77 deleterious(0) probably_damaging(0.924) TCGA-EA-A3HS-01 3 43122848 43122848 G A POMGNT2 Missense_Mutation p.R26C 0.67 tolerated_low_confidence(0.07) benign(0.002) TCGA-EA-A3HS-01 3 47627534 47627534 C T SMARCC1 3'UTR 0.87 TCGA-EA-A3HS-01 3 48609466 48609466 G A COL7A1 Missense_Mutation p.R2346C 0.69 probably_damaging(0.993) TCGA-EA-A3HS-01 3 49723316 49723316 G A MST1 Silent p.S409S 0.06 TCGA-EA-A3HS-01 3 52422254 52422254 C A DNAH1 Silent p.T3025T 0.32 TCGA-EA-A3HS-01 3 63817416 63817416 G A C3orf49 Missense_Mutation p.A249T 0.62 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 3 98515112 98515112 A - DCBLD2 3'UTR 0.29 TCGA-EA-A3HS-01 3 99513232 99513232 C T COL8A1 Missense_Mutation p.P163S 0.36 tolerated(0.05) unknown(0) TCGA-EA-A3HS-01 4 1018978 1018978 C T FGFRL1 Missense_Mutation p.P453L 0.74 tolerated(0.67) benign(0.001) TCGA-EA-A3HS-01 4 103500180 103500180 C T NFKB1 Silent p.D238D 0.38 TCGA-EA-A3HS-01 4 106163434 106163435 - T TET2 Intron 0.49 TCGA-EA-A3HS-01 4 110980879 110980879 T C ELOVL6 Missense_Mutation p.M85V 0.36 deleterious(0.01) benign(0.017) TCGA-EA-A3HS-01 4 119631415 119631415 G T METTL14 Silent p.G443G 0.71 TCGA-EA-A3HS-01 4 123245643 123245643 G A KIAA1109 Missense_Mutation p.S3619N 0.74 benign(0.158) TCGA-EA-A3HS-01 4 140640941 140640941 C A MAML3 Missense_Mutation p.G985C 0.70 possibly_damaging(0.895) TCGA-EA-A3HS-01 4 146700547 146700547 G A ZNF827 Nonsense_Mutation p.R834* 0.69 TCGA-EA-A3HS-01 4 148554110 148554110 C T TMEM184C Missense_Mutation p.T279M 0.59 deleterious(0.02) possibly_damaging(0.729) TCGA-EA-A3HS-01 4 153244185 153244185 G A FBXW7 Nonsense_Mutation p.R658* 0.69 TCGA-EA-A3HS-01 4 154215584 154215584 C T TRIM2 Missense_Mutation p.R245C 0.58 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 4 160279354 160279354 A G RAPGEF2 3'UTR 0.60 TCGA-EA-A3HS-01 4 16229067 16229067 T C TAPT1 5'Flank 0.71 TCGA-EA-A3HS-01 4 170038725 170038725 G A SH3RF1 Missense_Mutation p.H576Y 0.41 deleterious(0.01) possibly_damaging(0.501) TCGA-EA-A3HS-01 4 170428879 170428880 - T NEK1 Frame_Shift_Ins p.I633Nfs*28 0.41 TCGA-EA-A3HS-01 4 175897608 175897608 G A ADAM29 Missense_Mutation p.R311H 0.47 tolerated(0.46) benign(0.023) TCGA-EA-A3HS-01 4 184192344 184192344 G C WWC2 Missense_Mutation p.E838Q 0.51 tolerated(0.19) benign(0.421) TCGA-EA-A3HS-01 4 184236874 184236874 G A WWC2 Missense_Mutation p.D1191N 0.58 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HS-01 4 184236893 184236893 T A WWC2 3'UTR 0.60 TCGA-EA-A3HS-01 4 1949539 1949539 G A WHSC1 Intron 0.61 TCGA-EA-A3HS-01 4 1949796 1949796 G A WHSC1 Intron 0.69 TCGA-EA-A3HS-01 4 1950373 1950373 G A WHSC1 Intron 0.64 TCGA-EA-A3HS-01 4 2355670 2355670 C T ZFYVE28 Missense_Mutation p.R57H 0.43 tolerated(0.16) probably_damaging(0.953) TCGA-EA-A3HS-01 4 2814064 2814064 C T SH3BP2 5'UTR 0.19 TCGA-EA-A3HS-01 4 39878687 39878687 C T PDS5A Silent p.K693K 0.64 TCGA-EA-A3HS-01 4 48853910 48853910 G A OCIAD1 Missense_Mutation p.M155I 0.42 tolerated(0.18) benign(0) TCGA-EA-A3HS-01 4 56726598 56726598 A G EXOC1 Missense_Mutation p.Q49R 0.57 tolerated(0.56) benign(0.193) TCGA-EA-A3HS-01 4 56830467 56830467 C T CEP135 Nonsense_Mutation p.R243* 0.41 TCGA-EA-A3HS-01 4 57237752 57237752 G A AASDH Silent p.F242F 0.25 TCGA-EA-A3HS-01 4 72994571 72994571 C T NPFFR2 Missense_Mutation p.A190V 0.37 deleterious(0) possibly_damaging(0.85) TCGA-EA-A3HS-01 4 73927606 73927606 C T COX18 Missense_Mutation p.R251H 0.40 deleterious(0.04) benign(0.161) TCGA-EA-A3HS-01 4 76439665 76439665 C T THAP6 5'Flank 0.50 TCGA-EA-A3HS-01 4 77661610 77661610 G A SHROOM3 Missense_Mutation p.G762S 0.32 tolerated(1) benign(0) TCGA-EA-A3HS-01 4 77700922 77700922 A G SHROOM3 3'UTR 0.33 TCGA-EA-A3HS-01 4 77817429 77817429 C T SOWAHB Missense_Mutation p.R525H 0.22 deleterious(0) possibly_damaging(0.522) TCGA-EA-A3HS-01 4 78639787 78639787 G T CNOT6L 3'UTR 0.35 TCGA-EA-A3HS-01 4 89042815 89042815 C T ABCG2 Missense_Mutation p.A221T 0.39 tolerated(0.16) probably_damaging(0.948) TCGA-EA-A3HS-01 4 89397170 89397170 C T HERC5 Missense_Mutation p.S524L 0.30 tolerated(0.24) benign(0.006) TCGA-EA-A3HS-01 4 89628001 89628001 G A HERC3 Missense_Mutation p.A1015T 0.39 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 4 95194767 95194767 G T SMARCAD1 Splice_Site p.X525_splice 0.68 TCGA-EA-A3HS-01 4 99812427 99812427 C T EIF4E Missense_Mutation p.R61Q 0.14 tolerated(0.25) benign(0.015) TCGA-EA-A3HS-01 5 112870105 112870105 G A YTHDC2 Splice_Site p.X315_splice 0.29 TCGA-EA-A3HS-01 5 115782665 115782665 C T SEMA6A Missense_Mutation p.G913R 0.38 tolerated(0.16) benign(0.285) TCGA-EA-A3HS-01 5 121409733 121409733 C T LOX Missense_Mutation p.R337Q 0.38 deleterious(0.02) possibly_damaging(0.669) TCGA-EA-A3HS-01 5 121488337 121488337 C T ZNF474 Nonsense_Mutation p.R218* 0.41 TCGA-EA-A3HS-01 5 121767773 121767773 G A SNCAIP Missense_Mutation p.G431D 0.43 deleterious(0.01) probably_damaging(1) TCGA-EA-A3HS-01 5 125961027 125961027 G A PHAX 3'UTR 0.67 TCGA-EA-A3HS-01 5 126676272 126676272 G A MEGF10 Missense_Mutation p.R90H 0.19 deleterious(0) probably_damaging(0.982) TCGA-EA-A3HS-01 5 127595371 127595371 C A FBN2 Missense_Mutation p.G2839W 0.16 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 5 131719900 131719900 C T SLC22A5 Nonsense_Mutation p.Q187* 0.38 TCGA-EA-A3HS-01 5 132100013 132100013 G A SEPT8 Missense_Mutation p.R84W 0.41 deleterious(0) probably_damaging(0.927) TCGA-EA-A3HS-01 5 138704616 138704616 C A PAIP2 3'UTR 0.45 TCGA-EA-A3HS-01 5 139892957 139892957 A - ANKHD1 Frame_Shift_Del p.K1405Nfs*10 0.40 TCGA-EA-A3HS-01 5 140216215 140216215 A G PCDHA7 Silent p.S749S 0.31 TCGA-EA-A3HS-01 5 140431242 140431242 G A PCDHB1 Missense_Mutation p.G63R 0.50 tolerated(0.38) probably_damaging(0.992) TCGA-EA-A3HS-01 5 140554008 140554008 T C PCDHB7 Missense_Mutation p.V531A 0.35 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-EA-A3HS-01 5 140572921 140572921 G A PCDHB10 Missense_Mutation p.A266T 0.33 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-EA-A3HS-01 5 140626853 140626853 C T PCDHB15 Silent p.S569S 0.14 TCGA-EA-A3HS-01 5 140698901 140698901 C T TAF7 Silent p.Q237Q 0.43 TCGA-EA-A3HS-01 5 140730138 140730138 A G PCDHGB1 Missense_Mutation p.E104G 0.36 deleterious(0) possibly_damaging(0.507) TCGA-EA-A3HS-01 5 140731703 140731703 C T PCDHGB1 Missense_Mutation p.R626C 0.25 deleterious(0.01) possibly_damaging(0.479) TCGA-EA-A3HS-01 5 140735098 140735098 G C PCDHGA4 Missense_Mutation p.E111Q 0.41 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-EA-A3HS-01 5 140857913 140857913 G A PCDHGC3 Missense_Mutation p.A744T 0.49 tolerated(0.33) benign(0.005) TCGA-EA-A3HS-01 5 140864885 140864885 G A PCDHGC4 Missense_Mutation p.A49T 0.43 deleterious(0) probably_damaging(0.937) TCGA-EA-A3HS-01 5 141357907 141357907 G C RNF14 Missense_Mutation p.E116Q 0.37 deleterious(0.04) possibly_damaging(0.734) TCGA-EA-A3HS-01 5 141358057 141358057 G A RNF14 Missense_Mutation p.E166K 0.48 tolerated(0.32) benign(0.341) TCGA-EA-A3HS-01 5 141358188 141358188 G C RNF14 Missense_Mutation p.Q209H 0.38 deleterious(0.02) benign(0.027) TCGA-EA-A3HS-01 5 141692393 141692393 G A SPRY4 3'UTR 0.16 TCGA-EA-A3HS-01 5 14368882 14368882 C T TRIO Silent p.Y980Y 0.12 TCGA-EA-A3HS-01 5 145522443 145522443 C T LARS Silent p.P694P 0.12 TCGA-EA-A3HS-01 5 145878201 145878201 C T TCERG1 Silent p.A778A 0.44 TCGA-EA-A3HS-01 5 146619174 146619174 A G STK32A 5'UTR 0.54 TCGA-EA-A3HS-01 5 146741152 146741152 C T STK32A Missense_Mutation p.T212M 0.35 tolerated(0.39) probably_damaging(0.992) TCGA-EA-A3HS-01 5 148619346 148619346 C T ABLIM3 Missense_Mutation p.R367W 0.21 deleterious(0.01) possibly_damaging(0.886) TCGA-EA-A3HS-01 5 149216338 149216338 G A PPARGC1B Missense_Mutation p.A774T 0.37 tolerated(0.09) benign(0.271) TCGA-EA-A3HS-01 5 149629860 149629860 C T CAMK2A Missense_Mutation p.V277M 0.05 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-EA-A3HS-01 5 149755729 149755729 C T TCOF1 Nonsense_Mutation p.R660* 0.43 TCGA-EA-A3HS-01 5 149934579 149934579 G A NDST1 3'UTR 0.17 TCGA-EA-A3HS-01 5 153085299 153085299 C T GRIA1 Missense_Mutation p.R509W 0.46 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 5 156186532 156186532 C T SGCD 3'UTR 0.57 TCGA-EA-A3HS-01 5 158223470 158223470 G T EBF1 Silent p.I264I 0.34 TCGA-EA-A3HS-01 5 15928604 15928604 G A FBXL7 Missense_Mutation p.V245M 0.50 deleterious(0.02) possibly_damaging(0.627) TCGA-EA-A3HS-01 5 159520905 159520905 A G PWWP2A Missense_Mutation p.L251P 0.16 tolerated(0.34) benign(0.001) TCGA-EA-A3HS-01 5 180055982 180055982 C T FLT4 Missense_Mutation p.V335I 0.23 tolerated(0.34) benign(0.223) TCGA-EA-A3HS-01 5 32090969 32090969 C T PDZD2 Missense_Mutation p.T2472M 0.43 deleterious(0.02) benign(0.437) TCGA-EA-A3HS-01 5 33937531 33937531 C T RXFP3 Missense_Mutation p.S229L 0.20 deleterious(0.01) possibly_damaging(0.523) TCGA-EA-A3HS-01 5 35991379 35991379 C T UGT3A1 5'UTR 0.07 TCGA-EA-A3HS-01 5 37022190 37022190 G A NIPBL Missense_Mutation p.R1789Q 0.34 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HS-01 5 37835882 37835882 G A GDNF 5'UTR 0.37 TCGA-EA-A3HS-01 5 63256285 63256285 C T HTR1A Missense_Mutation p.R421H 0.30 deleterious(0) possibly_damaging(0.882) TCGA-EA-A3HS-01 5 63257413 63257413 G A HTR1A Missense_Mutation p.T45M 0.50 tolerated(0.26) benign(0.013) TCGA-EA-A3HS-01 5 67584468 67584468 A - PIK3R1 Intron 0.44 TCGA-EA-A3HS-01 5 71495820 71495820 G A MAP1B Missense_Mutation p.R2213H 0.38 probably_damaging(0.982) TCGA-EA-A3HS-01 5 71756472 71756472 C T ZNF366 Silent p.T284T 0.50 TCGA-EA-A3HS-01 5 74069855 74069855 C A NSA2 Missense_Mutation p.L229I 0.13 tolerated(0.14) possibly_damaging(0.614) TCGA-EA-A3HS-01 5 80382709 80382709 G A RASGRF2 Missense_Mutation p.E443K 0.39 deleterious(0) possibly_damaging(0.86) TCGA-EA-A3HS-01 5 89925289 89925290 AA - GPR98 Frame_Shift_Del p.Q591Rfs*10 0.29 TCGA-EA-A3HS-01 5 90106906 90106906 C T GPR98 Missense_Mutation p.R5277C 0.43 benign(0) TCGA-EA-A3HS-01 6 108230215 108230215 G A SEC63 Missense_Mutation p.R217C 0.18 deleterious(0) probably_damaging(0.969) TCGA-EA-A3HS-01 6 10830819 10830819 G A MAK Silent p.G21G 0.31 TCGA-EA-A3HS-01 6 108984766 108984766 G A FOXO3 Missense_Mutation p.G244R 0.31 deleterious(0) probably_damaging(0.971) TCGA-EA-A3HS-01 6 109002257 109002257 T - FOXO3 3'UTR 0.43 TCGA-EA-A3HS-01 6 10964045 10964045 C T SYCP2L 3'UTR 0.48 TCGA-EA-A3HS-01 6 110301032 110301032 C T GPR6 Silent p.G239G 0.23 TCGA-EA-A3HS-01 6 112021448 112021448 G A FYN Missense_Mutation p.R241C 0.43 tolerated(0.06) benign(0.135) TCGA-EA-A3HS-01 6 117632216 117632216 C T ROS1 Missense_Mutation p.C2067Y 0.46 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 6 137814010 137814010 A T OLIG3 3'UTR 0.14 TCGA-EA-A3HS-01 6 138662536 138662536 C T KIAA1244 3'UTR 0.26 TCGA-EA-A3HS-01 6 139583811 139583811 G A TXLNB Nonsense_Mutation p.Q263* 0.21 TCGA-EA-A3HS-01 6 143091325 143091325 C T HIVEP2 Silent p.S1517S 0.43 TCGA-EA-A3HS-01 6 143092507 143092507 C T HIVEP2 Silent p.P1123P 0.34 TCGA-EA-A3HS-01 6 143816887 143816887 G A FUCA2 Missense_Mutation p.P454L 0.38 deleterious(0.02) possibly_damaging(0.447) TCGA-EA-A3HS-01 6 146755818 146755818 G A GRM1 Silent p.S1157S 0.24 TCGA-EA-A3HS-01 6 147045353 147045353 T C ADGB Silent p.P709P 0.28 TCGA-EA-A3HS-01 6 149777940 149777940 C T ZC3H12D Missense_Mutation p.R181H 0.45 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 6 152442991 152442991 A - SYNE1 3'UTR 0.33 TCGA-EA-A3HS-01 6 152650938 152650938 G A SYNE1 Missense_Mutation p.A4961V 0.45 benign(0.011) TCGA-EA-A3HS-01 6 158900957 158900957 C - TULP4 Frame_Shift_Del p.R403Afs*24 0.32 TCGA-EA-A3HS-01 6 158902212 158902212 G A TULP4 Silent p.T459T 0.35 TCGA-EA-A3HS-01 6 168397411 168397411 C T KIF25 5'Flank 0.36 TCGA-EA-A3HS-01 6 170626692 170626692 C T FAM120B Nonsense_Mutation p.R72* 0.10 TCGA-EA-A3HS-01 6 18197423 18197423 G A KDM1B Missense_Mutation p.V237M 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-EA-A3HS-01 6 25581521 25581521 G A LRRC16A Missense_Mutation p.E954K 0.25 tolerated(0.1) possibly_damaging(0.711) TCGA-EA-A3HS-01 6 26246996 26246996 G A HIST1H4G Silent p.A70A 0.49 TCGA-EA-A3HS-01 6 26426513 26426513 C T BTN2A3P RNA 0.57 TCGA-EA-A3HS-01 6 28059074 28059074 C T ZNF165 3'Flank 0.42 TCGA-EA-A3HS-01 6 28543586 28543586 C T SCAND3 Missense_Mutation p.R299Q 0.37 tolerated_low_confidence(0.24) possibly_damaging(0.733) TCGA-EA-A3HS-01 6 29641436 29641436 C T ZFP57 Missense_Mutation p.C151Y 0.36 tolerated(0.09) benign(0.422) TCGA-EA-A3HS-01 6 29910687 29910687 T C HLA-A Missense_Mutation p.I76T 0.36 deleterious_low_confidence(0) possibly_damaging(0.476) TCGA-EA-A3HS-01 6 30680506 30680506 C A MDC1 Missense_Mutation p.D405Y 0.41 deleterious(0) probably_damaging(0.995) TCGA-EA-A3HS-01 6 31107415 31107415 C T PSORS1C1 Intron 0.48 TCGA-EA-A3HS-01 6 31107742 31107742 C G PSORS1C1 3'UTR 0.42 TCGA-EA-A3HS-01 6 31623842 31623842 C T APOM Silent p.G33G 0.62 TCGA-EA-A3HS-01 6 31778720 31778720 G A HSPA1L Missense_Mutation p.R344C 0.39 deleterious_low_confidence(0) benign(0.052) TCGA-EA-A3HS-01 6 31934523 31934523 C T SKIV2L Missense_Mutation p.T747M 0.38 deleterious(0) probably_damaging(0.934) TCGA-EA-A3HS-01 6 32017887 32017887 G A TNXB 5'Flank 0.42 TCGA-EA-A3HS-01 6 32134501 32134501 G A EGFL8 Missense_Mutation p.R83Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 6 33218730 33218730 C T VPS52 Missense_Mutation p.R687H 0.40 deleterious(0.01) probably_damaging(0.953) TCGA-EA-A3HS-01 6 35277530 35277530 C T DEF6 Silent p.D60D 0.43 TCGA-EA-A3HS-01 6 35287334 35287334 A G DEF6 Missense_Mutation p.K417E 0.18 deleterious(0.02) possibly_damaging(0.636) TCGA-EA-A3HS-01 6 35392604 35392604 C A PPARD Intron 0.48 TCGA-EA-A3HS-01 6 36922542 36922542 C T PI16 Silent p.H2H 0.56 TCGA-EA-A3HS-01 6 38891876 38891876 G A DNAH8 Missense_Mutation p.A3417T 0.37 benign(0.002) TCGA-EA-A3HS-01 6 40996111 40996111 C T UNC5CL 3'UTR 0.33 TCGA-EA-A3HS-01 6 43188289 43188289 C T CUL9 Silent p.T2125T 0.06 TCGA-EA-A3HS-01 6 43223516 43223517 - A TTBK1 Frame_Shift_Ins p.H263Afs*32 0.32 TCGA-EA-A3HS-01 6 43322474 43322474 G T ZNF318 Silent p.S866S 0.35 TCGA-EA-A3HS-01 6 43399818 43399818 G T ABCC10 Intron 0.33 TCGA-EA-A3HS-01 6 43581967 43581967 C T POLH Silent p.H605H 0.43 TCGA-EA-A3HS-01 6 44270171 44270171 G A AARS2 Missense_Mutation p.A815V 0.42 tolerated(0.45) benign(0.001) TCGA-EA-A3HS-01 6 44413549 44413549 G A CDC5L Missense_Mutation p.R750H 0.35 tolerated(0.12) benign(0) TCGA-EA-A3HS-01 6 49459995 49459995 T - CENPQ 3'UTR 0.76 TCGA-EA-A3HS-01 6 4955284 4955284 C T CDYL 3'Flank 0.21 TCGA-EA-A3HS-01 6 4955286 4955286 A G CDYL 3'Flank 0.19 TCGA-EA-A3HS-01 6 4955353 4955353 C T CDYL 3'Flank 0.17 TCGA-EA-A3HS-01 6 50814901 50814901 A - TFAP2B 3'UTR 0.37 TCGA-EA-A3HS-01 6 55147110 55147110 G A HCRTR2 Missense_Mutation p.R398Q 0.52 tolerated(0.06) benign(0.087) TCGA-EA-A3HS-01 6 56471474 56471474 G A DST Intron 0.51 TCGA-EA-A3HS-01 6 71570092 71570092 G A SMAP1 3'UTR 0.17 TCGA-EA-A3HS-01 6 78172558 78172558 C T HTR1B Missense_Mutation p.R188H 0.13 deleterious(0) probably_damaging(0.99) TCGA-EA-A3HS-01 6 80197216 80197216 T G LCA5 Missense_Mutation p.K533N 0.33 deleterious(0.03) benign(0.055) TCGA-EA-A3HS-01 6 83850060 83850060 T C DOPEY1 Missense_Mutation p.S1785P 0.38 tolerated(0.08) benign(0.013) TCGA-EA-A3HS-01 6 88138468 88138468 C A C6ORF165 Missense_Mutation p.P362H 0.38 deleterious(0) possibly_damaging(0.903) TCGA-EA-A3HS-01 6 90450058 90450058 T G MDN1 Missense_Mutation p.K1496N 0.31 probably_damaging(0.998) TCGA-EA-A3HS-01 6 96653526 96653526 C T FUT9 3'UTR 0.41 TCGA-EA-A3HS-01 7 100281717 100281717 T C GIGYF1 Silent p.P598P 0.48 TCGA-EA-A3HS-01 7 100405064 100405064 C T EPHB4 Missense_Mutation p.V753I 0.07 deleterious(0.02) probably_damaging(0.992) TCGA-EA-A3HS-01 7 106842358 106842358 C T COG5 3'Flank 0.42 TCGA-EA-A3HS-01 7 107341589 107341589 C T SLC26A4 Missense_Mutation p.A584V 0.42 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 7 107823310 107823310 G A NRCAM Missense_Mutation p.R787C 0.16 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 7 126173581 126173581 G A GRM8 Missense_Mutation p.R619C 0.52 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 7 128477224 128477224 C T FLNC Silent p.P204P 0.39 TCGA-EA-A3HS-01 7 129395150 129395150 A T NRF1 3'UTR 0.46 TCGA-EA-A3HS-01 7 138305867 138305867 G A SVOPL Missense_Mutation p.T426M 0.30 tolerated(0.06) benign(0.054) TCGA-EA-A3HS-01 7 138764278 138764278 C T ZC3HAV1 Missense_Mutation p.R470Q 0.46 tolerated(0.77) benign(0.001) TCGA-EA-A3HS-01 7 139221067 139221067 G A CLEC2L Missense_Mutation p.A80T 0.40 tolerated(0.09) benign(0.129) TCGA-EA-A3HS-01 7 140267027 140267027 C T DENND2A Silent p.A546A 0.26 TCGA-EA-A3HS-01 7 1477612 1477612 G A MICALL2 Silent p.D772D 0.21 TCGA-EA-A3HS-01 7 149133903 149133903 C T ZNF777 Missense_Mutation p.V368M 0.42 deleterious(0.04) probably_damaging(0.956) TCGA-EA-A3HS-01 7 149171842 149171842 G A ZNF746 Missense_Mutation p.A524V 0.47 deleterious(0.01) benign(0.275) TCGA-EA-A3HS-01 7 149576629 149576629 C T ATP6V0E2 Nonsense_Mutation p.R169* 0.39 TCGA-EA-A3HS-01 7 150555977 150555977 C T AOC1 Missense_Mutation p.A566V 0.36 deleterious(0.02) possibly_damaging(0.887) TCGA-EA-A3HS-01 7 150714168 150714168 G A ATG9B Silent p.R748R 0.17 TCGA-EA-A3HS-01 7 150714309 150714309 G A ATG9B Silent p.D701D 0.40 TCGA-EA-A3HS-01 7 150715435 150715435 G A ATG9B Silent p.P606P 0.35 TCGA-EA-A3HS-01 7 150754048 150754048 G A CDK5 Silent p.S47S 0.15 TCGA-EA-A3HS-01 7 151871282 151871282 G A KMT2C Missense_Mutation p.A3103V 0.43 probably_damaging(0.999) TCGA-EA-A3HS-01 7 151874713 151874713 G A KMT2C Nonsense_Mutation p.R2609* 0.45 TCGA-EA-A3HS-01 7 1539157 1539157 C T INTS1 Missense_Mutation p.V266M 0.41 tolerated(1) benign(0.001) TCGA-EA-A3HS-01 7 15651844 15651844 G A MEOX2 3'UTR 0.29 TCGA-EA-A3HS-01 7 158902551 158902551 C T VIPR2 Missense_Mutation p.V71I 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-EA-A3HS-01 7 1976464 1976464 G A MAD1L1 Missense_Mutation p.R556C 0.46 deleterious(0.02) benign(0.005) TCGA-EA-A3HS-01 7 23385632 23385632 G A IGF2BP3 Missense_Mutation p.R290C 0.48 deleterious(0) probably_damaging(0.912) TCGA-EA-A3HS-01 7 24874327 24874327 C T OSBPL3 Silent p.A508A 0.24 TCGA-EA-A3HS-01 7 24902870 24902870 G A OSBPL3 Silent p.H273H 0.20 TCGA-EA-A3HS-01 7 28449589 28449589 C T CREB5 5'Flank 0.42 TCGA-EA-A3HS-01 7 28995352 28995352 C T AC005013.5 5'Flank 0.38 TCGA-EA-A3HS-01 7 30878914 30878914 C T FAM188B Silent p.Y446Y 0.29 TCGA-EA-A3HS-01 7 35673997 35673997 A G HERPUD2 Silent p.H328H 0.25 TCGA-EA-A3HS-01 7 42007425 42007425 C T GLI3 Missense_Mutation p.D734N 0.48 tolerated(0.24) benign(0.003) TCGA-EA-A3HS-01 7 44073851 44073851 G A RASA4CP RNA 0.43 TCGA-EA-A3HS-01 7 44425583 44425583 G A NUDCD3 3'UTR 0.48 TCGA-EA-A3HS-01 7 45123918 45123918 C T NACAD Missense_Mutation p.A621T 0.32 tolerated(0.29) benign(0.032) TCGA-EA-A3HS-01 7 47317690 47317690 G A TNS3 Missense_Mutation p.S1441F 0.26 deleterious(0.01) probably_damaging(1) TCGA-EA-A3HS-01 7 5886872 5886872 G A ZNF815P RNA 0.23 TCGA-EA-A3HS-01 7 6196438 6196438 G A USP42 Missense_Mutation p.R1232K 0.47 tolerated(0.23) benign(0.041) TCGA-EA-A3HS-01 7 6210229 6210229 C T CYTH3 Missense_Mutation p.D254N 0.41 deleterious(0) benign(0.075) TCGA-EA-A3HS-01 7 6210514 6210514 C T CYTH3 Missense_Mutation p.A220T 0.39 tolerated(0.22) benign(0) TCGA-EA-A3HS-01 7 63982212 63982212 G A ZNF680 Missense_Mutation p.A307V 0.44 deleterious(0) benign(0.059) TCGA-EA-A3HS-01 7 6442357 6442357 C - RAC1 3'Flank 0.46 TCGA-EA-A3HS-01 7 72040680 72040680 T A TYW1B Missense_Mutation p.T230S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-EA-A3HS-01 7 72419997 72419997 C T POM121 3'UTR 0.47 TCGA-EA-A3HS-01 7 73461071 73461071 A T ELN Missense_Mutation p.Y206F 0.53 unknown(0) TCGA-EA-A3HS-01 7 73602092 73602092 C T EIF4H Missense_Mutation p.R71W 0.41 tolerated(0.06) benign(0.187) TCGA-EA-A3HS-01 7 73787326 73787326 C T CLIP2 Missense_Mutation p.A482V 0.50 deleterious(0.03) benign(0.173) TCGA-EA-A3HS-01 7 75625796 75625796 G A STYXL1 Missense_Mutation p.P311L 0.50 tolerated(0.13) benign(0.341) TCGA-EA-A3HS-01 7 77408859 77408859 T - RSBN1L 3'UTR 0.55 TCGA-EA-A3HS-01 7 77797302 77797302 C T MAGI2 Missense_Mutation p.D843N 0.41 deleterious(0) probably_damaging(0.941) TCGA-EA-A3HS-01 7 82579779 82579779 G A PCLO Silent p.T3375T 0.41 TCGA-EA-A3HS-01 7 87835349 87835350 - T SRI 3'UTR 0.53 TCGA-EA-A3HS-01 7 88389383 88389383 C T ZNF804B Silent p.N31N 0.36 TCGA-EA-A3HS-01 7 91726373 91726373 A - AKAP9 Frame_Shift_Del p.K3368Nfs*62 0.37 TCGA-EA-A3HS-01 7 92765222 92765222 T - SAMD9L Frame_Shift_Del p.K21Nfs*3 0.29 TCGA-EA-A3HS-01 7 95726865 95726865 C T DYNC1I1 Missense_Mutation p.A633V 0.51 tolerated(0.24) possibly_damaging(0.613) TCGA-EA-A3HS-01 7 97874330 97874330 C T TECPR1 Missense_Mutation p.R92H 0.45 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 7 99312198 99312198 G A CYP3A7 Missense_Mutation p.R260C 0.51 deleterious(0) probably_damaging(0.92) TCGA-EA-A3HS-01 8 102681821 102681821 A T GRHL2 3'UTR 0.52 TCGA-EA-A3HS-01 8 104337321 104337321 T G FZD6 Silent p.A329A 0.46 TCGA-EA-A3HS-01 8 12040818 12040818 C T FAM86B1 3'UTR 0.19 TCGA-EA-A3HS-01 8 121531025 121531025 C T MTBP Missense_Mutation p.R860C 0.33 deleterious(0) probably_damaging(0.968) TCGA-EA-A3HS-01 8 12879738 12879738 G A KIAA1456 3'UTR 0.42 TCGA-EA-A3HS-01 8 132991186 132991186 C T EFR3A Silent p.Y473Y 0.04 TCGA-EA-A3HS-01 8 143310865 143310865 C T TSNARE1 Missense_Mutation p.A508T 0.48 tolerated(0.31) benign(0.006) TCGA-EA-A3HS-01 8 144998520 144998520 C A PLEC Missense_Mutation p.K1996N 0.32 unknown(0) TCGA-EA-A3HS-01 8 145003862 145003862 C T PLEC Missense_Mutation p.G1096S 0.24 unknown(0) TCGA-EA-A3HS-01 8 145235226 145235226 G A MROH1 Missense_Mutation p.S149N 0.38 tolerated(1) benign(0.002) TCGA-EA-A3HS-01 8 145998644 145998644 G A ZNF34 3'UTR 0.15 TCGA-EA-A3HS-01 8 146107421 146107421 C T ZNF250 Missense_Mutation p.V388M 0.49 deleterious(0) probably_damaging(0.984) TCGA-EA-A3HS-01 8 1496848 1496848 G A DLGAP2 5'UTR 0.62 TCGA-EA-A3HS-01 8 1616690 1616690 G A DLGAP2 Missense_Mutation p.S589N 0.24 tolerated(0.05) probably_damaging(0.937) TCGA-EA-A3HS-01 8 1624759 1624759 G A DLGAP2 Missense_Mutation p.G675R 0.36 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 8 17228582 17228582 C T MTMR7 Missense_Mutation p.D92N 0.32 tolerated(0.05) benign(0.003) TCGA-EA-A3HS-01 8 2017427 2017427 A C MYOM2 Silent p.S228S 0.25 TCGA-EA-A3HS-01 8 23302036 23302036 G A ENTPD4 Missense_Mutation p.R166W 0.50 deleterious(0.01) probably_damaging(0.989) TCGA-EA-A3HS-01 8 27528425 27528425 G A SCARA3 Missense_Mutation p.G460S 0.47 deleterious(0.03) probably_damaging(0.961) TCGA-EA-A3HS-01 8 27634140 27634140 T C ESCO2 Silent p.S105S 0.42 TCGA-EA-A3HS-01 8 28928128 28928128 C T KIF13B Missense_Mutation p.A1792T 0.52 tolerated(0.3) benign(0.054) TCGA-EA-A3HS-01 8 29194248 29194248 A T DUSP4 3'UTR 0.42 TCGA-EA-A3HS-01 8 37597911 37597911 G A ERLIN2 Missense_Mutation p.G46S 0.42 tolerated(0.28) benign(0.125) TCGA-EA-A3HS-01 8 38065275 38065275 G A BAG4 Silent p.P208P 0.33 TCGA-EA-A3HS-01 8 38269263 38269263 C T FGFR1 3'UTR 0.58 TCGA-EA-A3HS-01 8 41801276 41801276 G A KAT6A Missense_Mutation p.R740C 0.31 probably_damaging(0.951) TCGA-EA-A3HS-01 8 42275375 42275375 C A SLC20A2 Silent p.L635L 0.37 TCGA-EA-A3HS-01 8 48761999 48761999 C A PRKDC Missense_Mutation p.E2356D 0.37 benign(0.012) TCGA-EA-A3HS-01 8 53597959 53597959 G A RB1CC1 Missense_Mutation p.T24I 0.36 deleterious(0.02) possibly_damaging(0.776) TCGA-EA-A3HS-01 8 64124417 64124417 A - YTHDF3 3'UTR 0.48 TCGA-EA-A3HS-01 8 68110354 68110354 A G ARFGEF1 3'UTR 0.27 TCGA-EA-A3HS-01 8 68130262 68130262 G C ARFGEF1 Missense_Mutation p.Q1484E 0.37 deleterious(0.01) possibly_damaging(0.718) TCGA-EA-A3HS-01 8 73937173 73937173 G T TERF1 Silent p.V247V 0.21 TCGA-EA-A3HS-01 8 73993368 73993368 G A SBSPON Missense_Mutation p.R99C 0.47 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 8 8234323 8234323 G A SGK223 Silent p.S532S 0.43 TCGA-EA-A3HS-01 8 87393781 87393781 G A WWP1 Missense_Mutation p.R86H 0.44 tolerated(1) benign(0) TCGA-EA-A3HS-01 8 96070095 96070095 C T NDUFAF6 Missense_Mutation p.P311L 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-EA-A3HS-01 8 97346154 97346154 C T PTDSS1 3'UTR 0.50 TCGA-EA-A3HS-01 8 99441489 99441489 C T KCNS2 Missense_Mutation p.R428C 0.47 tolerated(0.14) probably_damaging(0.99) TCGA-EA-A3HS-01 9 101706288 101706288 C A COL15A1 5'UTR 0.21 TCGA-EA-A3HS-01 9 101829168 101829169 - T COL15A1 Frame_Shift_Ins p.L1220Ffs*15 0.29 TCGA-EA-A3HS-01 9 104162172 104162172 C T ZNF189 Silent p.L14L 0.32 TCGA-EA-A3HS-01 9 104187133 104187133 G A ALDOB Missense_Mutation p.R331W 0.47 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 9 107289203 107289203 T A OR13C4 Silent p.G96G 0.41 TCGA-EA-A3HS-01 9 115931852 115931852 G T FKBP15 Missense_Mutation p.P1046H 0.26 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-EA-A3HS-01 9 116832015 116832015 G A AMBP Silent p.V189V 0.33 TCGA-EA-A3HS-01 9 116993393 116993393 C T COL27A1 Missense_Mutation p.P834L 0.31 unknown(0) TCGA-EA-A3HS-01 9 124976056 124976056 A G LHX6 Missense_Mutation p.W295R 0.67 deleterious(0.02) benign(0.037) TCGA-EA-A3HS-01 9 129265621 129265621 G A MVB12B 3'UTR 0.57 TCGA-EA-A3HS-01 9 129647027 129647027 G A ZBTB34 3'UTR 0.37 TCGA-EA-A3HS-01 9 129870195 129870195 C T ANGPTL2 Silent p.S272S 0.49 TCGA-EA-A3HS-01 9 130476173 130476173 C T C9orf117 Missense_Mutation p.R518C 0.45 tolerated(0.11) benign(0.431) TCGA-EA-A3HS-01 9 130570887 130570887 G A FPGS Silent p.P291P 0.15 TCGA-EA-A3HS-01 9 131016365 131016365 G A DNM1 Intron 0.30 TCGA-EA-A3HS-01 9 131851262 131851262 C T DOLPP1 Silent p.R231R 0.53 TCGA-EA-A3HS-01 9 132481668 132481668 C T PRRX2 Missense_Mutation p.R140C 0.42 deleterious(0) probably_damaging(0.983) TCGA-EA-A3HS-01 9 134340288 134340288 C T PRRC2B Missense_Mutation p.R515C 0.30 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 9 134350333 134350333 G A PRRC2B Silent p.S939S 0.32 TCGA-EA-A3HS-01 9 135778080 135778080 C T TSC1 Missense_Mutation p.R768H 0.54 tolerated(0.27) benign(0.001) TCGA-EA-A3HS-01 9 136198994 136198994 G A SURF6 Missense_Mutation p.A266V 0.49 tolerated(0.28) probably_damaging(0.923) TCGA-EA-A3HS-01 9 136295158 136295158 C T ADAMTS13 Silent p.N308N 0.38 TCGA-EA-A3HS-01 9 136559421 136559421 G A SARDH Missense_Mutation p.A627V 0.04 tolerated(0.29) benign(0.024) TCGA-EA-A3HS-01 9 138377414 138377414 C T PPP1R26 Missense_Mutation p.A353V 0.36 tolerated(0.2) benign(0.008) TCGA-EA-A3HS-01 9 138825240 138825240 C T UBAC1 3'UTR 0.28 TCGA-EA-A3HS-01 9 139250988 139250988 C T GPSM1 Missense_Mutation p.L603F 0.35 deleterious(0) probably_damaging(1) TCGA-EA-A3HS-01 9 139262146 139262146 C T CARD9 Silent p.A404A 0.41 TCGA-EA-A3HS-01 9 139273464 139273464 C T SNAPC4 Missense_Mutation p.G939S 0.25 tolerated(0.08) benign(0.027) TCGA-EA-A3HS-01 9 139317681 139317681 G A PMPCA Missense_Mutation p.G515R 0.45 tolerated(0.06) possibly_damaging(0.721) TCGA-EA-A3HS-01 9 139353672 139353672 C T SEC16A Missense_Mutation p.A1775T 0.34 deleterious(0) probably_damaging(0.985) TCGA-EA-A3HS-01 9 139716474 139716474 A G RABL6 Intron 0.44 TCGA-EA-A3HS-01 9 139814832 139814832 G A TRAF2 Silent p.L275L 0.36 TCGA-EA-A3HS-01 9 140686532 140686532 C T EHMT1 Intron 0.32 TCGA-EA-A3HS-01 9 140919430 140919430 C T CACNA1B Missense_Mutation p.T1031I 0.48 tolerated(0.28) benign(0.028) TCGA-EA-A3HS-01 9 141015142 141015142 C T CACNA1B Missense_Mutation p.R2100W 0.59 deleterious(0.01) benign(0.428) TCGA-EA-A3HS-01 9 16412328 16412328 A - BNC2 3'UTR 0.21 TCGA-EA-A3HS-01 9 19063047 19063047 T - HAUS6 Frame_Shift_Del p.S530Vfs*12 0.30 TCGA-EA-A3HS-01 9 33047383 33047383 C T SMU1 Missense_Mutation p.E484K 0.44 tolerated(0.14) benign(0.271) TCGA-EA-A3HS-01 9 33466921 33466921 C A NOL6 Missense_Mutation p.G647C 0.43 tolerated(0.06) benign(0.013) TCGA-EA-A3HS-01 9 34372077 34372077 C T KIAA1161 Missense_Mutation p.V255I 0.19 tolerated(0.29) benign(0.01) TCGA-EA-A3HS-01 9 34657105 34657105 C T IL11RA Silent p.S135S 0.37 TCGA-EA-A3HS-01 9 35102160 35102160 C T STOML2 Missense_Mutation p.R72Q 0.42 tolerated(0.09) benign(0.073) TCGA-EA-A3HS-01 9 35650779 35650779 G A SIT1 Silent p.G24G 0.47 TCGA-EA-A3HS-01 9 35741860 35741860 G A GBA2 Nonsense_Mutation p.Q199* 0.50 TCGA-EA-A3HS-01 9 74298466 74298466 A T TMEM2 3'UTR 0.37 TCGA-EA-A3HS-01 9 745766 745766 A T KANK1 3'UTR 0.57 TCGA-EA-A3HS-01 9 79117617 79117617 G A GCNT1 Missense_Mutation p.R107H 0.48 deleterious(0.01) benign(0.058) TCGA-EA-A3HS-01 9 85964626 85964626 A G FRMD3 Silent p.H114H 0.47 TCGA-EA-A3HS-01 9 90502251 90502251 C T SPATA31E1 Missense_Mutation p.P950L 0.16 tolerated(1) benign(0.003) TCGA-EA-A3HS-01 9 93639961 93639961 G A SYK Silent p.P430P 0.10 TCGA-EA-A3HS-01 9 94484910 94484910 C T ROR2 3'UTR 0.34 TCGA-EA-A3HS-01 9 94519683 94519683 G A ROR2 Missense_Mutation p.R112W 0.19 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HS-01 9 95475341 95475341 C T BICD2 3'UTR 0.33 TCGA-EA-A3HS-01 X 100503523 100503523 G A DRP2 Missense_Mutation p.R492Q 0.49 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HS-01 X 103349023 103349023 A G SLC25A53 Silent p.T306T 0.35 TCGA-EA-A3HS-01 X 106845110 106845110 C T FRMPD3 Missense_Mutation p.R1314C 0.44 deleterious(0) probably_damaging(0.952) TCGA-EA-A3HS-01 X 107446159 107446159 G A COL4A6 Missense_Mutation p.P279L 0.48 unknown(0) TCGA-EA-A3HS-01 X 117744258 117744258 C T DOCK11 Silent p.P991P 0.35 TCGA-EA-A3HS-01 X 119572962 119572962 T C LAMP2 Intron 0.11 TCGA-EA-A3HS-01 X 122624582 122624582 T - GRIA3 3'UTR 0.37 TCGA-EA-A3HS-01 X 131761531 131761531 A - HS6ST2 3'Flank 0.16 TCGA-EA-A3HS-01 X 132160412 132160413 - T USP26 Frame_Shift_Ins p.G613Rfs*6 0.43 TCGA-EA-A3HS-01 X 132458430 132458430 C T GPC4 Missense_Mutation p.V152M 0.28 deleterious(0) benign(0.353) TCGA-EA-A3HS-01 X 135429049 135429049 G A GPR112 Missense_Mutation p.A1062T 0.35 tolerated(0.31) benign(0.017) TCGA-EA-A3HS-01 X 137793175 137793175 G A FGF13 Intron 0.48 TCGA-EA-A3HS-01 X 138664560 138664560 G A MCF2 3'UTR 0.26 TCGA-EA-A3HS-01 X 140270664 140270664 G A LDOC1 3'UTR 0.22 TCGA-EA-A3HS-01 X 144910326 144910326 A - TMEM257 3'UTR 0.30 TCGA-EA-A3HS-01 X 147743991 147743991 C T AFF2 Missense_Mutation p.A248V 0.27 tolerated(0.09) benign(0.012) TCGA-EA-A3HS-01 X 148571901 148571901 G A IDS Missense_Mutation p.A106V 0.28 tolerated(0.06) benign(0.098) TCGA-EA-A3HS-01 X 152225709 152225710 - G PNMA3 Frame_Shift_Ins p.E101Gfs*81 0.32 TCGA-EA-A3HS-01 X 152771357 152771357 C T BGN Missense_Mutation p.H130Y 0.17 deleterious(0.02) benign(0.266) TCGA-EA-A3HS-01 X 153185035 153185035 G A ARHGAP4 Missense_Mutation p.P263S 0.43 tolerated_low_confidence(0.79) benign(0) TCGA-EA-A3HS-01 X 153578063 153578063 G A FLNA Silent p.G2502G 0.23 TCGA-EA-A3HS-01 X 153582660 153582660 C A FLNA Splice_Site p.X1806_splice 0.44 TCGA-EA-A3HS-01 X 153760650 153760650 G A G6PD Missense_Mutation p.R469C 0.18 deleterious(0) probably_damaging(0.947) TCGA-EA-A3HS-01 X 17768146 17768146 C T SCML1 Missense_Mutation p.R146C 0.17 tolerated(0.07) benign(0.002) TCGA-EA-A3HS-01 X 18674856 18674856 T C RS1 Missense_Mutation p.Y34C 0.44 tolerated_low_confidence(0.08) benign(0.326) TCGA-EA-A3HS-01 X 18926128 18926128 C T PHKA2 Missense_Mutation p.V803I 0.44 tolerated(0.05) benign(0.26) TCGA-EA-A3HS-01 X 21874792 21874792 C T YY2 Missense_Mutation p.P64S 0.35 deleterious(0.04) possibly_damaging(0.742) TCGA-EA-A3HS-01 X 30849403 30849403 C T TAB3 3'UTR 0.33 TCGA-EA-A3HS-01 X 32459306 32459306 C A DMD Missense_Mutation p.E1304D 0.13 benign(0.351) TCGA-EA-A3HS-01 X 34961541 34961541 G A FAM47B Missense_Mutation p.R198H 0.38 tolerated(1) benign(0) TCGA-EA-A3HS-01 X 34962238 34962238 C T FAM47B Silent p.T430T 0.44 TCGA-EA-A3HS-01 X 34962556 34962556 G A FAM47B Silent p.P536P 0.28 TCGA-EA-A3HS-01 X 41554976 41554976 C T GPR34 Silent p.S30S 0.35 TCGA-EA-A3HS-01 X 47039421 47039421 C T RBM10 Silent p.I348I 0.50 TCGA-EA-A3HS-01 X 47424284 47424284 A C ARAF Missense_Mutation p.T97P 0.43 deleterious(0.01) possibly_damaging(0.623) TCGA-EA-A3HS-01 X 48317079 48317079 C T SLC38A5 3'UTR 0.17 TCGA-EA-A3HS-01 X 48455993 48455993 A C WDR13 5'UTR 0.12 TCGA-EA-A3HS-01 X 48549648 48549648 C - WAS 3'UTR 0.41 TCGA-EA-A3HS-01 X 48767192 48767192 C T SLC35A2 Missense_Mutation p.R58H 0.20 deleterious(0) probably_damaging(0.985) TCGA-EA-A3HS-01 X 48846409 48846409 C T GRIPAP1 Missense_Mutation p.E233K 0.19 benign(0.388) TCGA-EA-A3HS-01 X 48887919 48887919 G - TFE3 Frame_Shift_Del p.P493Lfs*33 0.38 TCGA-EA-A3HS-01 X 49067504 49067504 T C CACNA1F Missense_Mutation p.T1448A 0.46 deleterious(0) benign(0.126) TCGA-EA-A3HS-01 X 50053973 50053973 A C CCNB3 Missense_Mutation p.E935A 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-EA-A3HS-01 X 55044045 55044045 G A ALAS2 Missense_Mutation p.R293C 0.34 deleterious(0) possibly_damaging(0.839) TCGA-EA-A3HS-01 X 56592199 56592200 - A UBQLN2 3'UTR 0.39 TCGA-EA-A3HS-01 X 63408209 63408209 A G AMER1 3'UTR 0.33 TCGA-EA-A3HS-01 X 63411915 63411915 G A AMER1 Missense_Mutation p.R418W 0.41 deleterious(0) possibly_damaging(0.903) TCGA-EA-A3HS-01 X 70343029 70343029 G A MED12 Missense_Mutation p.V524M 0.51 probably_damaging(0.994) TCGA-EA-A3HS-01 X 70469384 70469384 C A ZMYM3 Missense_Mutation p.G466V 0.28 tolerated(0.16) probably_damaging(0.917) TCGA-EA-A3HS-01 X 73061294 73061294 C T XIST RNA 0.57 TCGA-EA-A3HS-01 X 74144788 74144788 G A KIAA2022 5'UTR 0.38 TCGA-EA-A3HS-01 X 74144810 74144810 C T KIAA2022 5'UTR 0.42 TCGA-EA-A3HS-01 X 76762745 76762745 G A ATRX 3'UTR 0.35 TCGA-EA-A3HS-01 X 77369334 77369334 G A PGK1 Silent p.V70V 0.43 TCGA-EA-A3HS-01 X 78616847 78616847 G A ITM2A Missense_Mutation p.R228C 0.45 deleterious(0.04) benign(0.003) TCGA-EA-A3HS-01 X 7868735 7868735 A C PNPLA4 Missense_Mutation p.F252V 0.44 deleterious(0.04) benign(0.231) TCGA-EA-A3HS-01 X 7889836 7889836 C T PNPLA4 Missense_Mutation p.R110Q 0.41 deleterious(0) probably_damaging(0.995) TCGA-EA-A3HS-01 X 80047437 80047437 G A BRWD3 Silent p.L116L 0.27 TCGA-EA-A3HS-01 X 90689883 90689883 C T PABPC5 5'UTR 0.38 TCGA-EA-A3HS-01 X 90691819 90691819 T - PABPC5 3'UTR 0.52 TCGA-EA-A3HS-01 X 9728757 9728757 C T GPR143 Silent p.A120A 0.33 TCGA-EA-A3HT-01 10 101180553 101180553 G A GOT1 Missense_Mutation p.T43M 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-EA-A3HT-01 10 105209516 105209516 G A CALHM2 Silent p.I61I 0.38 TCGA-EA-A3HT-01 10 121429618 121429618 C T BAG3 Nonsense_Mutation p.Q146* 0.10 TCGA-EA-A3HT-01 10 48438679 48438679 C G GDF10 Missense_Mutation p.G11A 0.21 tolerated_low_confidence(0.15) benign(0.128) TCGA-EA-A3HT-01 10 73832657 73832657 C T SPOCK2 Intron 0.19 TCGA-EA-A3HT-01 10 81070929 81070929 G A ZMIZ1 Silent p.E1028E 0.30 TCGA-EA-A3HT-01 10 96602636 96602636 G A CYP2C19 Missense_Mutation p.R335Q 0.19 tolerated(0.07) possibly_damaging(0.529) TCGA-EA-A3HT-01 10 97050682 97050682 G A PDLIM1 5'UTR 0.29 TCGA-EA-A3HT-01 11 105782765 105782766 - A GRIA4 Intron 0.30 TCGA-EA-A3HT-01 11 123901075 123901075 G T OR10G8 Missense_Mutation p.C249F 0.25 tolerated(0.19) probably_damaging(1) TCGA-EA-A3HT-01 11 4598948 4598948 C T C11orf40 Missense_Mutation p.E35K 0.19 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-EA-A3HT-01 11 47331143 47331143 T A MADD Missense_Mutation p.S1380T 0.29 deleterious(0) benign(0.071) TCGA-EA-A3HT-01 11 55904545 55904545 G A OR8J3 Missense_Mutation p.S217F 0.21 deleterious(0.01) benign(0.232) TCGA-EA-A3HT-01 11 55927085 55927085 C G OR8K5 Missense_Mutation p.A237P 0.18 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-EA-A3HT-01 11 56380697 56380697 G A OR5M1 Silent p.Y94Y 0.40 TCGA-EA-A3HT-01 11 62300590 62300590 C T AHNAK Silent p.K433K 0.40 TCGA-EA-A3HT-01 11 63277954 63277954 G A LGALS12 Missense_Mutation p.R194K 0.23 tolerated(1) benign(0.002) TCGA-EA-A3HT-01 11 65266481 65266481 C T MALAT1 RNA 0.25 TCGA-EA-A3HT-01 11 67274909 67274909 G A CDK2AP2 Silent p.V80V 0.30 TCGA-EA-A3HT-01 11 85779764 85779764 G A PICALM Missense_Mutation p.S20F 0.20 deleterious(0) possibly_damaging(0.839) TCGA-EA-A3HT-01 12 112130576 112130576 G A ACAD10 Silent p.L21L 0.35 TCGA-EA-A3HT-01 12 970314 970314 G A WNK1 Missense_Mutation p.E586K 0.30 deleterious(0.01) unknown(0) TCGA-EA-A3HT-01 13 103468786 103468786 A G BIVM-ERCC5 Missense_Mutation p.K135E 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-EA-A3HT-01 13 27250824 27250824 G A WASF3 Missense_Mutation p.G227R 0.17 tolerated(0.06) possibly_damaging(0.905) TCGA-EA-A3HT-01 13 33629357 33629357 G A KL Missense_Mutation p.E502K 0.16 tolerated(0.23) benign(0.023) TCGA-EA-A3HT-01 13 49283482 49283482 C T CYSLTR2 3'UTR 0.14 TCGA-EA-A3HT-01 14 55510091 55510091 G A SOCS4 Missense_Mutation p.R111Q 0.32 tolerated(0.48) probably_damaging(0.999) TCGA-EA-A3HT-01 14 93264171 93264171 C T GOLGA5 Missense_Mutation p.S130L 0.31 deleterious(0.01) possibly_damaging(0.722) TCGA-EA-A3HT-01 14 94245521 94245521 C T PRIMA1 Splice_Site p.X77_splice 0.31 TCGA-EA-A3HT-01 15 22867488 22867488 T G TUBGCP5 Missense_Mutation p.L855R 0.25 tolerated(0.41) benign(0.003) TCGA-EA-A3HT-01 15 48495110 48495110 C T CTXN2 3'UTR 0.23 TCGA-EA-A3HT-01 15 72457721 72457721 C T GRAMD2 Missense_Mutation p.E192K 0.28 tolerated(0.39) benign(0.012) TCGA-EA-A3HT-01 15 75219205 75219205 C T COX5A Missense_Mutation p.D81N 0.36 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HT-01 16 30995833 30995833 G A SETD1A 3'UTR 0.29 TCGA-EA-A3HT-01 16 46533886 46533886 T - ANKRD26P1 RNA 0.31 TCGA-EA-A3HT-01 16 68328701 68328701 C T SLC7A6 Silent p.F372F 0.27 TCGA-EA-A3HT-01 17 37571589 37571589 G A MED1 Missense_Mutation p.S434F 0.28 tolerated(0.7) benign(0.242) TCGA-EA-A3HT-01 17 43332973 43332973 G A SPATA32 Silent p.L192L 0.27 TCGA-EA-A3HT-01 17 45727423 45727423 G A KPNB1 5'UTR 0.19 TCGA-EA-A3HT-01 17 4686189 4686189 G C TM4SF5 Missense_Mutation p.E146Q 0.24 tolerated(0.65) benign(0.007) TCGA-EA-A3HT-01 17 54534305 54534305 G T ANKFN1 Missense_Mutation p.V434L 0.21 tolerated(0.42) benign(0.275) TCGA-EA-A3HT-01 17 61611639 61611639 C T KCNH6 Silent p.F356F 0.31 TCGA-EA-A3HT-01 17 73258236 73258236 C T MRPS7 Intron 0.38 TCGA-EA-A3HT-01 17 76212773 76212773 T A BIRC5 Missense_Mutation p.C107S 0.31 deleterious(0) probably_damaging(0.982) TCGA-EA-A3HT-01 17 76212853 76212853 G C BIRC5 Missense_Mutation p.K133N 0.34 deleterious(0.02) probably_damaging(0.991) TCGA-EA-A3HT-01 17 78321462 78321462 C T RNF213 Silent p.Y3109Y 0.26 TCGA-EA-A3HT-01 17 79219322 79219322 C A SLC38A10 3'UTR 0.30 TCGA-EA-A3HT-01 17 9632113 9632113 G A USP43 Missense_Mutation p.E1060K 0.28 tolerated(0.09) possibly_damaging(0.536) TCGA-EA-A3HT-01 18 47908591 47908591 G A SKA1 Silent p.Q102Q 0.27 TCGA-EA-A3HT-01 18 48593411 48593411 C T SMAD4 Nonsense_Mutation p.Q388* 0.59 TCGA-EA-A3HT-01 18 74637258 74637258 G A ZNF236 Missense_Mutation p.E1257K 0.48 deleterious(0.01) possibly_damaging(0.61) TCGA-EA-A3HT-01 19 12739121 12739121 C G ZNF791 Missense_Mutation p.L260V 0.33 deleterious(0.04) benign(0.215) TCGA-EA-A3HT-01 19 2038007 2038007 G A MKNK2 3'UTR 0.26 TCGA-EA-A3HT-01 19 21605716 21605717 TA - ZNF493 Frame_Shift_Del p.I86Mfs*6 0.16 TCGA-EA-A3HT-01 19 2767201 2767201 C T SGTA Silent p.L75L 0.28 TCGA-EA-A3HT-01 19 33470307 33470307 T G RHPN2 3'UTR 0.12 TCGA-EA-A3HT-01 19 35614455 35614455 C T FXYD3 3'UTR 0.26 TCGA-EA-A3HT-01 19 36045926 36045926 C T ATP4A Silent p.K793K 0.20 TCGA-EA-A3HT-01 19 3978083 3978083 G A EEF2 Missense_Mutation p.R601W 0.28 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HT-01 19 41455118 41455118 G A AC092071.1 3'Flank 0.23 TCGA-EA-A3HT-01 19 44832470 44832470 G A ZNF112 Missense_Mutation p.R620W 0.10 tolerated(0.15) probably_damaging(0.999) TCGA-EA-A3HT-01 19 46181461 46181461 G A GIPR Missense_Mutation p.E377K 0.09 deleterious(0.02) possibly_damaging(0.85) TCGA-EA-A3HT-01 19 51165460 51165460 G C SHANK1 Missense_Mutation p.S2083W 0.33 unknown(0) TCGA-EA-A3HT-01 19 55220959 55220959 G T AC098784.2 3'Flank 0.38 TCGA-EA-A3HT-01 1 152191494 152191494 C T HRNR Missense_Mutation p.E871K 0.05 unknown(0) TCGA-EA-A3HT-01 1 154245995 154245995 C T HAX1 Silent p.F79F 0.16 TCGA-EA-A3HT-01 1 154293674 154293674 C T AQP10 Missense_Mutation p.R15W 0.19 tolerated(0.07) possibly_damaging(0.888) TCGA-EA-A3HT-01 1 155148617 155148617 C T TRIM46 Silent p.F193F 0.32 TCGA-EA-A3HT-01 1 15783232 15783232 A G CELA2A 5'UTR 0.13 TCGA-EA-A3HT-01 1 166810229 166810229 G A POGK Silent p.L12L 0.22 TCGA-EA-A3HT-01 1 174945277 174945277 G A RABGAP1L Silent p.E176E 0.16 TCGA-EA-A3HT-01 1 196977806 196977806 G A CFHR5 Missense_Mutation p.C568Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HT-01 1 20009173 20009173 C T TMCO4 3'UTR 0.13 TCGA-EA-A3HT-01 1 203456552 203456552 C T PRELP 3'UTR 0.10 TCGA-EA-A3HT-01 1 206325421 206325421 T C CTSE Missense_Mutation p.S216P 0.41 deleterious(0) probably_damaging(0.99) TCGA-EA-A3HT-01 1 226438593 226438593 T A LIN9 Nonsense_Mutation p.K372* 0.45 TCGA-EA-A3HT-01 1 234565269 234565269 C G TARBP1 Missense_Mutation p.V922L 0.24 tolerated(0.33) benign(0.003) TCGA-EA-A3HT-01 1 40149741 40149741 G A HPCAL4 Silent p.F82F 0.19 TCGA-EA-A3HT-01 1 91813002 91813002 A G HFM1 Silent p.I746I 0.14 TCGA-EA-A3HT-01 20 33077688 33077688 G C ITCH Missense_Mutation p.R800P 0.14 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HT-01 20 35717489 35717489 C T RBL1 Missense_Mutation p.V65I 0.29 deleterious(0.01) benign(0.269) TCGA-EA-A3HT-01 20 62191301 62191301 T C HELZ2 Missense_Mutation p.Q2602R 0.28 deleterious(0.04) benign(0.075) TCGA-EA-A3HT-01 21 45539369 45539369 G A PWP2 Missense_Mutation p.G385R 0.22 deleterious(0) probably_damaging(1) TCGA-EA-A3HT-01 22 18899215 18899215 G A DGCR6 3'UTR 0.29 TCGA-EA-A3HT-01 22 19213066 19213066 G A CLTCL1 Nonsense_Mutation p.Q680* 0.50 TCGA-EA-A3HT-01 22 22160227 22160227 C T MAPK1 Missense_Mutation p.R135K 0.30 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HT-01 22 29925173 29925173 G A THOC5 Silent p.F301F 0.33 TCGA-EA-A3HT-01 22 41793459 41793459 G A TEF 3'UTR 0.25 TCGA-EA-A3HT-01 2 130877823 130877823 G C POTEF Missense_Mutation p.S89C 0.24 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EA-A3HT-01 2 136482287 136482287 G A R3HDM1 3'UTR 0.32 TCGA-EA-A3HT-01 2 136873458 136873458 C T CXCR4 Missense_Mutation p.E18K 0.42 tolerated(0.21) benign(0.084) TCGA-EA-A3HT-01 2 138414450 138414450 G A THSD7B Missense_Mutation p.R1400H 0.28 tolerated(0.54) unknown(0) TCGA-EA-A3HT-01 2 144969113 144969114 TG GTT GTDC1 5'UTR 0.19 TCGA-EA-A3HT-01 2 145157705 145157705 G T ZEB2 Missense_Mutation p.T350K 0.28 tolerated(0.18) possibly_damaging(0.669) TCGA-EA-A3HT-01 2 217279674 217279674 G A SMARCAL1 Missense_Mutation p.D83N 0.27 tolerated_low_confidence(0.16) benign(0.004) TCGA-EA-A3HT-01 2 228882421 228882421 G A SPHKAP Missense_Mutation p.T1050M 0.24 deleterious(0.01) possibly_damaging(0.832) TCGA-EA-A3HT-01 2 238427252 238427252 C A MLPH Silent p.G172G 0.42 TCGA-EA-A3HT-01 2 241066089 241066089 G C MYEOV2 Nonsense_Mutation p.S217* 0.27 TCGA-EA-A3HT-01 2 241066249 241066249 G A MYEOV2 Missense_Mutation p.P164S 0.39 tolerated_low_confidence(0.19) unknown(0) TCGA-EA-A3HT-01 2 28812907 28812908 - TTT PLB1 In_Frame_Ins p.F685dup 0.35 TCGA-EA-A3HT-01 2 3691113 3691113 C T COLEC11 Silent p.L150L 0.18 TCGA-EA-A3HT-01 2 44161914 44161914 C T LRPPRC Missense_Mutation p.E870K 0.36 tolerated(0.05) benign(0.028) TCGA-EA-A3HT-01 2 79348029 79348029 G A REG1A Silent p.L14L 0.25 TCGA-EA-A3HT-01 3 113659095 113659095 C G GRAMD1C Missense_Mutation p.S604C 0.20 tolerated(0.06) possibly_damaging(0.687) TCGA-EA-A3HT-01 3 130735010 130735010 G C ASTE1 Missense_Mutation p.L563V 0.14 deleterious(0.05) possibly_damaging(0.804) TCGA-EA-A3HT-01 3 148749060 148749060 G A HLTF 3'UTR 0.29 TCGA-EA-A3HT-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.29 deleterious(0.02) probably_damaging(0.959) TCGA-EA-A3HT-01 3 184429564 184429564 C T MAGEF1 Missense_Mutation p.E16K 0.24 tolerated(0.27) benign(0.042) TCGA-EA-A3HT-01 3 23852950 23852950 G A UBE2E1 Splice_Site p.X51_splice 0.58 TCGA-EA-A3HT-01 3 32209057 32209057 C T GPD1L 3'UTR 0.57 TCGA-EA-A3HT-01 3 35763138 35763138 A G ARPP21 Missense_Mutation p.Q312R 0.19 deleterious(0) possibly_damaging(0.607) TCGA-EA-A3HT-01 3 3889248 3889248 G A LRRN1 3'UTR 0.53 TCGA-EA-A3HT-01 4 1245063 1245063 C T CTBP1 5'Flank 0.27 TCGA-EA-A3HT-01 4 159092077 159092077 G A FAM198B Nonsense_Mutation p.Q151* 0.35 TCGA-EA-A3HT-01 4 1824729 1824729 G A LETM1 Missense_Mutation p.R488C 0.45 tolerated(0.06) benign(0.416) TCGA-EA-A3HT-01 4 69519864 69519864 C T UGT2B15 Missense_Mutation p.D402N 0.26 deleterious(0.02) benign(0.063) TCGA-EA-A3HT-01 4 71008261 71008261 C G C4orf40 RNA 0.35 TCGA-EA-A3HT-01 4 99264323 99264323 G A RAP1GDS1 Missense_Mutation p.G50E 0.13 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HT-01 5 109117292 109117292 C T MAN2A1 Missense_Mutation p.H524Y 0.39 tolerated(0.29) benign(0.005) TCGA-EA-A3HT-01 5 131676382 131676382 G A SLC22A4 Silent p.Q523Q 0.22 TCGA-EA-A3HT-01 5 137801471 137801471 G A EGR1 Silent p.E7E 0.29 TCGA-EA-A3HT-01 5 140176967 140176967 T C PCDHA2 Intron 0.21 TCGA-EA-A3HT-01 5 140182480 140182480 G A PCDHA3 Silent p.L566L 0.27 TCGA-EA-A3HT-01 5 140475095 140475095 G A PCDHB2 Missense_Mutation p.V241I 0.31 deleterious_low_confidence(0.01) benign(0.001) TCGA-EA-A3HT-01 5 150029452 150029452 A C SYNPO Missense_Mutation p.T783P 0.24 deleterious(0.03) benign(0.126) TCGA-EA-A3HT-01 5 64466540 64466540 C T ADAMTS6 Missense_Mutation p.G1050R 0.27 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HT-01 5 66459794 66459794 C T MAST4 Missense_Mutation p.A1596V 0.20 benign(0.038) TCGA-EA-A3HT-01 6 139229911 139229911 G A REPS1 Nonsense_Mutation p.R703* 0.27 TCGA-EA-A3HT-01 6 165746505 165746505 G T PDE10A 3'UTR 0.30 TCGA-EA-A3HT-01 6 31855591 31855591 G A EHMT2 Silent p.A631A 0.14 TCGA-EA-A3HT-01 6 31855658 31855658 G A EHMT2 Missense_Mutation p.S609F 0.29 deleterious(0.02) benign(0.178) TCGA-EA-A3HT-01 6 33053656 33053656 G A HLA-DPB1 Silent p.R249R 0.13 TCGA-EA-A3HT-01 6 33162460 33162460 C T RXRB Silent p.%3D 0.16 TCGA-EA-A3HT-01 6 33164323 33164323 C T RXRB Missense_Mutation p.G294E 0.46 deleterious(0.01) possibly_damaging(0.726) TCGA-EA-A3HT-01 6 47674978 47674978 A T GPR115 5'UTR 0.39 TCGA-EA-A3HT-01 6 71298431 71298431 G A C6orf57 3'UTR 0.15 TCGA-EA-A3HT-01 6 7583774 7583774 C T DSP Silent p.I2093I 0.31 TCGA-EA-A3HT-01 6 79944138 79944138 G A HMGN3 Intron 0.26 TCGA-EA-A3HT-01 7 124503594 124503594 G A POT1 Missense_Mutation p.S119L 0.38 deleterious(0.03) possibly_damaging(0.515) TCGA-EA-A3HT-01 7 20198840 20198840 G A MACC1 Missense_Mutation p.P382S 0.42 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HT-01 7 25268070 25268070 C A NPVF 5'UTR 0.30 TCGA-EA-A3HT-01 8 103226329 103226329 C T RRM2B Missense_Mutation p.E248K 0.30 tolerated_low_confidence(0.42) benign(0.002) TCGA-EA-A3HT-01 8 11189300 11189300 G T SLC35G5 Missense_Mutation p.V229L 0.24 tolerated(0.27) probably_damaging(0.997) TCGA-EA-A3HT-01 8 21958969 21958969 C G FAM160B2 Silent p.P545P 0.23 TCGA-EA-A3HT-01 8 30702461 30702461 C T TEX15 Missense_Mutation p.R1358K 0.07 tolerated(0.2) benign(0.225) TCGA-EA-A3HT-01 8 41789766 41789766 C T KAT6A Missense_Mutation p.G1991D 0.24 unknown(0) TCGA-EA-A3HT-01 9 123800210 123800210 C T C5 Silent p.S147S 0.21 TCGA-EA-A3HT-01 9 139637372 139637372 C T LCN10 5'UTR 0.27 TCGA-EA-A3HT-01 9 15695319 15695319 G A CCDC171 Silent p.S434S 0.33 TCGA-EA-A3HT-01 9 2643293 2643293 C T VLDLR Silent p.G194G 0.16 TCGA-EA-A3HT-01 9 91610643 91610643 G C C9orf47 3'UTR 0.24 TCGA-EA-A3HT-01 9 95646227 95646227 C T RP11-526D8.7 RNA 0.27 TCGA-EA-A3HT-01 X 101095805 101095805 T C NXF5 Silent p.T181T 0.20 TCGA-EA-A3HT-01 X 101472938 101472938 G A TCP11X1 5'UTR 0.33 TCGA-EA-A3HT-01 X 128977345 128977345 G T ZDHHC9 Intron 0.46 TCGA-EA-A3HT-01 X 130411002 130411002 C A IGSF1 Missense_Mutation p.G845V 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-EA-A3HT-01 X 140984632 140984632 C T MAGEC3 Intron 0.19 TCGA-EA-A3HT-01 X 152034375 152034375 G A NSDHL Missense_Mutation p.A186T 0.20 deleterious(0.02) possibly_damaging(0.627) TCGA-EA-A3HT-01 X 152710753 152710753 C T TREX2 Missense_Mutation p.D46N 0.20 tolerated(0.51) benign(0.003) TCGA-EA-A3HT-01 X 153061914 153061914 C T SSR4 Silent p.I31I 0.17 TCGA-EA-A3HT-01 X 16170721 16170721 A G GRPR Missense_Mutation p.T370A 0.15 tolerated(0.18) benign(0.002) TCGA-EA-A3HT-01 X 30848833 30848833 G A TAB3 3'UTR 0.21 TCGA-EA-A3HT-01 X 47001822 47001822 C T NDUFB11 Missense_Mutation p.R129H 0.16 deleterious(0.02) possibly_damaging(0.481) TCGA-EA-A3HT-01 X 48317297 48317297 G A SLC38A5 3'UTR 0.09 TCGA-EA-A3HT-01 X 54823504 54823504 C T ITIH6 Missense_Mutation p.R43H 0.18 tolerated(0.3) benign(0.024) TCGA-EA-A3HT-01 X 69723810 69723810 C T DLG3 3'UTR 0.24 TCGA-EA-A3HT-01 X 77264738 77264738 G A ATP7A Missense_Mutation p.R616K 0.17 deleterious(0) probably_damaging(0.986) TCGA-EA-A3HT-01 X 92967241 92967241 A C FAM133A 3'UTR 0.13 TCGA-EA-A3HT-01 X 99931137 99931137 G A SYTL4 Missense_Mutation p.S635L 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-EA-A3HU-01 10 101953149 101953149 C G CHUK Missense_Mutation p.E672Q 0.31 deleterious(0.03) benign(0.008) TCGA-EA-A3HU-01 10 1034391 1034392 - A GTPBP4 5'UTR 0.20 TCGA-EA-A3HU-01 10 1046733 1046733 G A GTPBP4 Silent p.L257L 0.22 TCGA-EA-A3HU-01 10 11378333 11378333 C T CELF2 3'UTR 0.24 TCGA-EA-A3HU-01 10 117706898 117706898 T C ATRNL1 3'UTR 0.35 TCGA-EA-A3HU-01 10 119015165 119015165 G A SLC18A2 Missense_Mutation p.A298T 0.28 deleterious(0.01) benign(0.403) TCGA-EA-A3HU-01 10 119800044 119800044 C T RAB11FIP2 Missense_Mutation p.R129Q 0.40 tolerated(0.05) probably_damaging(0.984) TCGA-EA-A3HU-01 10 120460911 120460911 A G CACUL1 Missense_Mutation p.Y235H 0.50 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 10 12056181 12056181 C T UPF2 Missense_Mutation p.R383H 0.15 deleterious(0) possibly_damaging(0.679) TCGA-EA-A3HU-01 10 121214600 121214600 T C GRK5 3'UTR 0.35 TCGA-EA-A3HU-01 10 12209675 12209675 A - NUDT5 3'UTR 0.20 TCGA-EA-A3HU-01 10 12238138 12238138 G C CDC123 5'UTR 0.16 TCGA-EA-A3HU-01 10 126092460 126092460 C T OAT Silent p.A226A 0.45 TCGA-EA-A3HU-01 10 13275542 13275542 G C UCMA Silent p.V72V 0.28 TCGA-EA-A3HU-01 10 133961495 133961495 G C JAKMIP3 Missense_Mutation p.E597Q 0.39 tolerated(0.09) probably_damaging(0.928) TCGA-EA-A3HU-01 10 133981523 133981523 G A JAKMIP3 3'UTR 0.22 TCGA-EA-A3HU-01 10 134754547 134754547 G A TTC40 Silent p.C108C 0.26 TCGA-EA-A3HU-01 10 13489309 13489309 C T BEND7 Silent p.A346A 0.31 TCGA-EA-A3HU-01 10 14961745 14961745 C T DCLRE1C Missense_Mutation p.R383Q 0.25 tolerated(0.59) benign(0.002) TCGA-EA-A3HU-01 10 15296873 15296873 G A FAM171A1 Missense_Mutation p.R142W 0.27 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HU-01 10 17026127 17026127 G A CUBN Missense_Mutation p.A1501V 0.25 tolerated(0.2) benign(0.127) TCGA-EA-A3HU-01 10 17757178 17757179 TG - STAM 3'UTR 0.31 TCGA-EA-A3HU-01 10 20105682 20105682 C T PLXDC2 5'UTR 0.18 TCGA-EA-A3HU-01 10 21115385 21115385 A G NEBL Silent p.N620N 0.20 TCGA-EA-A3HU-01 10 24909833 24909833 G A ARHGAP21 Missense_Mutation p.H331Y 0.18 tolerated(0.5) benign(0.005) TCGA-EA-A3HU-01 10 27551888 27551888 C T ARMC4P1 RNA 0.31 TCGA-EA-A3HU-01 10 38344302 38344302 C T ZNF33A Missense_Mutation p.A417V 0.26 tolerated(0.14) benign(0.008) TCGA-EA-A3HU-01 10 43678974 43678974 G T CSGALNACT2 Missense_Mutation p.S538I 0.33 deleterious(0) possibly_damaging(0.489) TCGA-EA-A3HU-01 10 46222739 46222739 C A FAM21C 5'UTR 0.50 TCGA-EA-A3HU-01 10 48388181 48388181 C G RBP3 Missense_Mutation p.M899I 0.28 tolerated(0.36) benign(0) TCGA-EA-A3HU-01 10 50174698 50174698 C T WDFY4 Missense_Mutation p.P2855L 0.31 tolerated(0.6) benign(0.016) TCGA-EA-A3HU-01 10 60127703 60127703 C G UBE2D1 Missense_Mutation p.L109V 0.13 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-EA-A3HU-01 10 73828011 73828011 G A SPOCK2 Nonsense_Mutation p.R175* 0.38 TCGA-EA-A3HU-01 10 74093244 74093244 G A DNAJB12 3'UTR 0.33 TCGA-EA-A3HU-01 10 75834509 75834510 - T VCL Frame_Shift_Ins p.V213Cfs*4 0.36 TCGA-EA-A3HU-01 10 80763446 80763446 G C RP11-481G8.2 RNA 0.35 TCGA-EA-A3HU-01 10 87359312 87359312 A C GRID1 3'UTR 0.25 TCGA-EA-A3HU-01 10 87407251 87407251 C T GRID1 Intron 0.33 TCGA-EA-A3HU-01 10 88728217 88728217 G A ADIRF 5'UTR 0.46 TCGA-EA-A3HU-01 10 89118101 89118101 C G NUTM2D Missense_Mutation p.L27V 0.14 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-EA-A3HU-01 10 96058365 96058365 G A PLCE1 Silent p.P1799P 0.21 TCGA-EA-A3HU-01 10 96447906 96447906 G C CYP2C18 Missense_Mutation p.R119T 0.26 tolerated(0.77) benign(0.02) TCGA-EA-A3HU-01 10 98469594 98469594 A C PIK3AP1 Missense_Mutation p.S54A 0.35 tolerated(0.49) benign(0.108) TCGA-EA-A3HU-01 11 101762304 101762305 - G ANGPTL5 Frame_Shift_Ins p.K291Nfs*4 0.21 TCGA-EA-A3HU-01 11 107431560 107431560 C T ALKBH8 Silent p.R20R 0.20 TCGA-EA-A3HU-01 11 10794773 10794773 G A CTR9 Missense_Mutation p.E894K 0.22 tolerated(0.86) benign(0.007) TCGA-EA-A3HU-01 11 108150308 108150308 G C ATM Missense_Mutation p.L1125F 0.23 tolerated(0.09) benign(0.013) TCGA-EA-A3HU-01 11 10818807 10818807 T C EIF4G2 3'UTR 0.25 TCGA-EA-A3HU-01 11 112064599 112064599 C T BCO2 Intron 0.30 TCGA-EA-A3HU-01 11 113076861 113076861 G - NCAM1 Frame_Shift_Del p.E257Rfs*11 0.21 TCGA-EA-A3HU-01 11 113102431 113102431 T C NCAM1 Missense_Mutation p.I434T 0.20 deleterious(0) benign(0.431) TCGA-EA-A3HU-01 11 113660803 113660803 C T ATF4P4 RNA 0.18 TCGA-EA-A3HU-01 11 1162089 1162089 G A MUC5AC Silent p.A560A 0.26 TCGA-EA-A3HU-01 11 116628986 116628986 C A BUD13 Missense_Mutation p.G500W 0.23 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 11 118375513 118375513 C G KMT2A Missense_Mutation p.S2969C 0.21 possibly_damaging(0.711) TCGA-EA-A3HU-01 11 119042084 119042084 C T NLRX1 5'UTR 0.19 TCGA-EA-A3HU-01 11 120957533 120957533 G A TBCEL Missense_Mutation p.E335K 0.29 tolerated(0.26) benign(0.051) TCGA-EA-A3HU-01 11 123847899 123847899 G A OR10S1 Missense_Mutation p.A167V 0.25 tolerated(0.1) probably_damaging(0.938) TCGA-EA-A3HU-01 11 123893793 123893793 T A OR10G9 Missense_Mutation p.L25H 0.22 deleterious(0) probably_damaging(0.967) TCGA-EA-A3HU-01 11 124252641 124252641 A G OR8B2 Missense_Mutation p.L200P 0.16 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-EA-A3HU-01 11 125788628 125788628 C T DDX25 Nonsense_Mutation p.Q382* 0.26 TCGA-EA-A3HU-01 11 125853858 125853858 G A CDON Silent p.I968I 0.31 TCGA-EA-A3HU-01 11 1263798 1263798 G A MUC5B Silent p.T1896T 0.28 TCGA-EA-A3HU-01 11 128709383 128709383 G A KCNJ1 Silent p.V271V 0.28 TCGA-EA-A3HU-01 11 128841051 128841051 G A ARHGAP32 Nonsense_Mutation p.Q1339* 0.35 TCGA-EA-A3HU-01 11 129830932 129830932 C G PRDM10 5'UTR 0.32 TCGA-EA-A3HU-01 11 132286852 132286852 G A OPCML 3'UTR 0.15 TCGA-EA-A3HU-01 11 132288992 132288992 G C OPCML 3'UTR 0.39 TCGA-EA-A3HU-01 11 13409882 13409882 C T BTBD10 3'UTR 0.22 TCGA-EA-A3HU-01 11 15260507 15260507 C A INSC Missense_Mutation p.S474Y 0.24 tolerated(0.81) benign(0.259) TCGA-EA-A3HU-01 11 17741572 17741573 GC - MYOD1 Frame_Shift_Del p.P84Qfs*43 0.21 TCGA-EA-A3HU-01 11 18956366 18956366 G C MRGPRX1 5'UTR 0.20 TCGA-EA-A3HU-01 11 211208 211208 G A RIC8A Silent p.V276V 0.07 TCGA-EA-A3HU-01 11 22647304 22647304 G A FANCF Missense_Mutation p.S18L 0.23 deleterious(0) probably_damaging(0.99) TCGA-EA-A3HU-01 11 26484627 26484627 G C ANO3 Missense_Mutation p.D122H 0.27 deleterious(0.01) possibly_damaging(0.873) TCGA-EA-A3HU-01 11 290594 290594 G A ATHL1 Missense_Mutation p.G155E 0.28 tolerated(0.08) possibly_damaging(0.882) TCGA-EA-A3HU-01 11 32955319 32955319 C T QSER1 Missense_Mutation p.H710Y 0.33 deleterious(0) benign(0.211) TCGA-EA-A3HU-01 11 32955635 32955635 T G QSER1 Missense_Mutation p.F815C 0.45 tolerated(0.06) probably_damaging(0.994) TCGA-EA-A3HU-01 11 34120902 34120902 G A CAPRIN1 Silent p.Q706Q 0.26 TCGA-EA-A3HU-01 11 34492955 34492955 C T CAT Missense_Mutation p.A520V 0.32 tolerated_low_confidence(0.11) benign(0.003) TCGA-EA-A3HU-01 11 35642192 35642192 C G FJX1 3'UTR 0.11 TCGA-EA-A3HU-01 11 3658459 3658459 C T ART5 3'Flank 0.37 TCGA-EA-A3HU-01 11 418316 418316 G T ANO9 3'UTR 0.16 TCGA-EA-A3HU-01 11 43775659 43775659 T G HSD17B12 Missense_Mutation p.S91A 0.30 tolerated(1) benign(0.014) TCGA-EA-A3HU-01 11 44077812 44077812 T C ACCSL Silent p.F421F 0.35 TCGA-EA-A3HU-01 11 46395776 46395776 G C DGKZ Missense_Mutation p.E654Q 0.28 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 11 46897492 46897492 C - LRP4 Frame_Shift_Del p.E1188Rfs*5 0.23 TCGA-EA-A3HU-01 11 48285667 48285667 C G OR4X1 Missense_Mutation p.I85M 0.23 tolerated(0.2) benign(0.007) TCGA-EA-A3HU-01 11 5142642 5142642 T G OR52A4 RNA 0.42 TCGA-EA-A3HU-01 11 5221010 5221010 C T OR51V1 Silent p.Q307Q 0.21 TCGA-EA-A3HU-01 11 55890680 55890680 T C OR8H3 Missense_Mutation p.Y278H 0.26 deleterious(0.01) possibly_damaging(0.874) TCGA-EA-A3HU-01 11 55926966 55926966 C T OR8K5 Silent p.V276V 0.30 TCGA-EA-A3HU-01 11 56000560 56000560 G A OR5T2 Silent p.F34F 0.38 TCGA-EA-A3HU-01 11 5624476 5624476 G A TRIM6-TRIM34 Silent p.R6R 0.23 TCGA-EA-A3HU-01 11 57175331 57175331 G A SLC43A3 Silent p.F470F 0.19 TCGA-EA-A3HU-01 11 57585576 57585576 A G CTNND1 3'UTR 0.20 TCGA-EA-A3HU-01 11 58979797 58979797 C T MPEG1 Missense_Mutation p.R181H 0.29 tolerated(1) benign(0.002) TCGA-EA-A3HU-01 11 59343779 59343779 C T OSBP 3'UTR 0.10 TCGA-EA-A3HU-01 11 6007193 6007193 C G OR52L1 Missense_Mutation p.R323T 0.20 deleterious(0.04) benign(0.005) TCGA-EA-A3HU-01 11 60235878 60235878 G A MS4A1 Silent p.T277T 0.21 TCGA-EA-A3HU-01 11 60264919 60264919 C T MS4A12 Missense_Mutation p.A43V 0.36 tolerated(0.35) benign(0.029) TCGA-EA-A3HU-01 11 60776020 60776020 C T CD6 Missense_Mutation p.R162C 0.48 deleterious(0) probably_damaging(0.99) TCGA-EA-A3HU-01 11 61249366 61249366 G A PPP1R32 Missense_Mutation p.A29T 0.17 tolerated(0.15) probably_damaging(0.993) TCGA-EA-A3HU-01 11 613210 613210 G A IRF7 Silent p.F424F 0.21 TCGA-EA-A3HU-01 11 61736159 61736159 G C AP003733.1 3'UTR 0.40 TCGA-EA-A3HU-01 11 62373432 62373432 G A EML3 Silent p.A559A 0.15 TCGA-EA-A3HU-01 11 62384213 62384213 C T B3GAT3 Missense_Mutation p.R225Q 0.23 tolerated(0.11) possibly_damaging(0.744) TCGA-EA-A3HU-01 11 62393834 62393834 G A GANAB Missense_Mutation p.S888L 0.29 tolerated(0.16) benign(0.005) TCGA-EA-A3HU-01 11 62554237 62554239 CTT - TAF6L In_Frame_Del p.F448del 0.31 TCGA-EA-A3HU-01 11 6261555 6261555 T C CNGA4 Silent p.F177F 0.27 TCGA-EA-A3HU-01 11 63275916 63275916 G T LGALS12 Intron 0.41 TCGA-EA-A3HU-01 11 64026024 64026024 C T PLCB3 Silent p.D364D 0.22 TCGA-EA-A3HU-01 11 64855570 64855570 G A ZFPL1 Missense_Mutation p.R306H 0.18 deleterious(0.02) possibly_damaging(0.471) TCGA-EA-A3HU-01 11 64855822 64855822 G A ZFPL1 3'UTR 0.32 TCGA-EA-A3HU-01 11 65617642 65617642 C A SNX32 Missense_Mutation p.P92T 0.26 deleterious(0) possibly_damaging(0.855) TCGA-EA-A3HU-01 11 65771228 65771228 C T BANF1 Silent p.C85C 0.23 TCGA-EA-A3HU-01 11 66032657 66032657 G A KLC2 Missense_Mutation p.A429T 0.28 tolerated(1) benign(0) TCGA-EA-A3HU-01 11 67207593 67207593 C T CORO1B Missense_Mutation p.A335T 0.21 tolerated(0.07) possibly_damaging(0.78) TCGA-EA-A3HU-01 11 6738700 6738700 C G GVINP1 RNA 0.32 TCGA-EA-A3HU-01 11 67832053 67832053 C T CHKA Missense_Mutation p.E391K 0.27 tolerated(0.08) benign(0.002) TCGA-EA-A3HU-01 11 67833918 67833918 C T CHKA Missense_Mutation p.E332K 0.21 deleterious(0) probably_damaging(0.981) TCGA-EA-A3HU-01 11 68517982 68517982 G A MTL5 Silent p.F49F 0.25 TCGA-EA-A3HU-01 11 70319407 70319407 C T SHANK2 Missense_Mutation p.R1707H 0.19 tolerated(0.07) possibly_damaging(0.522) TCGA-EA-A3HU-01 11 829993 829993 G T EFCAB4A Missense_Mutation p.A156S 0.27 tolerated(0.1) benign(0.333) TCGA-EA-A3HU-01 11 86665856 86665856 G C FZD4 Missense_Mutation p.S91C 0.33 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 11 8707103 8707103 G T RPL27A Intron 0.26 TCGA-EA-A3HU-01 11 89395390 89395390 A G FOLH1B RNA 0.33 TCGA-EA-A3HU-01 11 92085607 92085607 A C FAT3 Missense_Mutation p.K110T 0.23 probably_damaging(0.96) TCGA-EA-A3HU-01 11 93433163 93433163 G A KIAA1731 Silent p.L1695L 0.15 TCGA-EA-A3HU-01 11 93796772 93796772 T A HEPHL1 Missense_Mutation p.Y172N 0.17 deleterious(0.02) probably_damaging(0.962) TCGA-EA-A3HU-01 11 96126264 96126264 T C JRKL 3'UTR 0.24 TCGA-EA-A3HU-01 12 10151671 10151671 A G CLEC1B Missense_Mutation p.L10S 0.16 deleterious(0) probably_damaging(0.973) TCGA-EA-A3HU-01 12 10282728 10282728 C G CLEC7A 5'UTR 0.29 TCGA-EA-A3HU-01 12 103249048 103249048 A C PAH Missense_Mutation p.F191C 0.27 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 12 103288558 103288559 - A PAH Frame_Shift_Ins p.G103Wfs*6 0.18 TCGA-EA-A3HU-01 12 10560365 10560365 C G KLRC4 Missense_Mutation p.E122Q 0.21 deleterious(0.02) probably_damaging(0.92) TCGA-EA-A3HU-01 12 107083095 107083095 C G RFX4 Missense_Mutation p.H217D 0.19 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 12 10862601 10862601 C T YBX3 Missense_Mutation p.R229H 0.25 tolerated(0.07) possibly_damaging(0.61) TCGA-EA-A3HU-01 12 109505432 109505432 G A USP30 Silent p.Q160Q 0.27 TCGA-EA-A3HU-01 12 110348891 110348891 G T TCHP Missense_Mutation p.Q301H 0.31 tolerated(0.11) possibly_damaging(0.811) TCGA-EA-A3HU-01 12 111758156 111758156 C T CUX2 Silent p.D781D 0.23 TCGA-EA-A3HU-01 12 112103478 112103478 G T BRAP Missense_Mutation p.F287L 0.26 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 12 112103588 112103588 C T BRAP Missense_Mutation p.A251T 0.20 deleterious(0.04) probably_damaging(0.943) TCGA-EA-A3HU-01 12 112450938 112450938 C T TMEM116 5'Flank 0.32 TCGA-EA-A3HU-01 12 112844564 112844564 C T RPL6 Missense_Mutation p.R156H 0.33 tolerated(0.2) benign(0.017) TCGA-EA-A3HU-01 12 113307748 113307748 C T RPH3A Missense_Mutation p.R234C 0.27 deleterious(0.03) probably_damaging(0.915) TCGA-EA-A3HU-01 12 11339326 11339326 G A TAS2R42 Missense_Mutation p.S73L 0.10 deleterious(0.04) benign(0.009) TCGA-EA-A3HU-01 12 113546012 113546012 C T RASAL1 Missense_Mutation p.A465T 0.26 deleterious(0) possibly_damaging(0.783) TCGA-EA-A3HU-01 12 113753242 113753242 C T SLC8B1 Missense_Mutation p.V345M 0.16 deleterious(0.04) benign(0.22) TCGA-EA-A3HU-01 12 113826874 113826874 C A PLBD2 3'UTR 0.27 TCGA-EA-A3HU-01 12 114793304 114793304 C G TBX5 3'UTR 0.29 TCGA-EA-A3HU-01 12 117426499 117426499 G C FBXW8 Missense_Mutation p.R355T 0.36 tolerated(0.68) benign(0) TCGA-EA-A3HU-01 12 120653737 120653737 C T PXN Intron 0.40 TCGA-EA-A3HU-01 12 121206187 121206187 C - SPPL3 Frame_Shift_Del p.N240Mfs*85 0.25 TCGA-EA-A3HU-01 12 122437841 122437841 G A WDR66 Missense_Mutation p.V1076I 0.18 tolerated(0.34) benign(0) TCGA-EA-A3HU-01 12 122692314 122692314 G A DIABLO 3'UTR 0.23 TCGA-EA-A3HU-01 12 123213775 123213775 C - HCAR1 3'UTR 0.25 TCGA-EA-A3HU-01 12 123335842 123335842 C G HIP1R Nonsense_Mutation p.S192* 0.23 TCGA-EA-A3HU-01 12 124809092 124809092 C T NCOR2 3'UTR 0.35 TCGA-EA-A3HU-01 12 124832779 124832779 C T NCOR2 Missense_Mutation p.R1309H 0.17 probably_damaging(0.999) TCGA-EA-A3HU-01 12 126139090 126139090 T A TMEM132B Missense_Mutation p.V1024D 0.29 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 12 129189681 129189681 C T TMEM132C Missense_Mutation p.T723M 0.35 tolerated(0.08) benign(0.342) TCGA-EA-A3HU-01 12 130648507 130648507 G A FZD10 Silent p.K340K 0.28 TCGA-EA-A3HU-01 12 131297555 131297555 T A STX2 Missense_Mutation p.D76V 0.35 tolerated(0.09) benign(0.315) TCGA-EA-A3HU-01 12 131622720 131622720 G A GPR133 Silent p.S825S 0.21 TCGA-EA-A3HU-01 12 13906621 13906621 A C GRIN2B Missense_Mutation p.S214A 0.31 tolerated(0.74) benign(0.006) TCGA-EA-A3HU-01 12 15773413 15773413 G A EPS8 3'UTR 0.28 TCGA-EA-A3HU-01 12 18889263 18889263 C G PLCZ1 Missense_Mutation p.K9N 0.24 tolerated(0.31) benign(0.052) TCGA-EA-A3HU-01 12 21375257 21375257 C T SLCO1B1 Missense_Mutation p.S569L 0.23 deleterious(0) probably_damaging(0.933) TCGA-EA-A3HU-01 12 25101993 25101993 A G RP11-662I13.2 5'Flank 0.36 TCGA-EA-A3HU-01 12 25679808 25679808 T G IFLTD1 Missense_Mutation p.E191D 0.21 deleterious(0) probably_damaging(0.966) TCGA-EA-A3HU-01 12 26774150 26774150 A G ITPR2 Missense_Mutation p.V1123A 0.21 deleterious(0) possibly_damaging(0.799) TCGA-EA-A3HU-01 12 2706419 2706419 T G CACNA1C Silent p.V939V 0.27 TCGA-EA-A3HU-01 12 28412327 28412327 G T CCDC91 Nonsense_Mutation p.E21* 0.29 TCGA-EA-A3HU-01 12 2907010 2907011 - C FKBP4 Frame_Shift_Ins p.N125Qfs*7 0.22 TCGA-EA-A3HU-01 12 29659559 29659559 C G TMTC1 3'Flank 0.33 TCGA-EA-A3HU-01 12 32140196 32140196 G T KIAA1551 Nonsense_Mutation p.E1676* 0.15 TCGA-EA-A3HU-01 12 33529812 33529812 C G SYT10 Missense_Mutation p.D509H 0.20 deleterious(0.01) possibly_damaging(0.819) TCGA-EA-A3HU-01 12 3747406 3747406 C T EFCAB4B Missense_Mutation p.E496K 0.30 tolerated(0.08) benign(0.128) TCGA-EA-A3HU-01 12 40151677 40151677 A C SLC2A13 3'UTR 0.19 TCGA-EA-A3HU-01 12 42481514 42481514 C T GXYLT1 3'UTR 0.24 TCGA-EA-A3HU-01 12 43771178 43771178 T G ADAMTS20 Missense_Mutation p.K1662T 0.14 tolerated(0.34) benign(0.387) TCGA-EA-A3HU-01 12 43824240 43824240 C T ADAMTS20 Missense_Mutation p.R1099Q 0.24 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 12 46245685 46245685 A G ARID2 Missense_Mutation p.E1260G 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EA-A3HU-01 12 4657315 4657315 C G RAD51AP1 Missense_Mutation p.S143C 0.46 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 12 49504305 49504305 G A LMBR1L Nonsense_Mutation p.R12* 0.31 TCGA-EA-A3HU-01 12 49691261 49691261 C T PRPH Missense_Mutation p.A373V 0.29 deleterious(0) probably_damaging(0.957) TCGA-EA-A3HU-01 12 5021367 5021367 G A KCNA1 Missense_Mutation p.E275K 0.09 tolerated(0.19) benign(0.368) TCGA-EA-A3HU-01 12 50748028 50748028 C T FAM186A Missense_Mutation p.E863K 0.14 tolerated(1) benign(0.005) TCGA-EA-A3HU-01 12 51279034 51279034 G A TMPRSS12 Missense_Mutation p.A220T 0.17 tolerated(0.41) benign(0.005) TCGA-EA-A3HU-01 12 51458139 51458141 TCT - CSRNP2 In_Frame_Del p.E340del 0.33 TCGA-EA-A3HU-01 12 52881499 52881499 G A KRT6A 3'UTR 0.22 TCGA-EA-A3HU-01 12 53069101 53069101 G A KRT1 Missense_Mutation p.S604F 0.31 tolerated_low_confidence(0.09) unknown(0) TCGA-EA-A3HU-01 12 53071166 53071166 G T KRT1 Silent p.V354V 0.22 TCGA-EA-A3HU-01 12 54856430 54856430 A C GTSF1 Missense_Mutation p.D108E 0.19 tolerated(0.93) benign(0.275) TCGA-EA-A3HU-01 12 56515629 56515629 G A ZC3H10 Missense_Mutation p.R428H 0.24 tolerated(0.08) benign(0.099) TCGA-EA-A3HU-01 12 56873669 56873669 C G GLS2 Missense_Mutation p.G100A 0.11 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 12 56992362 56992362 G - BAZ2A 3'UTR 0.25 TCGA-EA-A3HU-01 12 57910641 57910641 G A DDIT3 Missense_Mutation p.A177V 0.31 tolerated(0.17) benign(0.009) TCGA-EA-A3HU-01 12 58001319 58001319 G A DTX3 Missense_Mutation p.A225T 0.13 tolerated(0.44) benign(0.033) TCGA-EA-A3HU-01 12 58201263 58201263 C T AVIL Missense_Mutation p.A448T 0.19 deleterious(0.04) probably_damaging(1) TCGA-EA-A3HU-01 12 6425464 6425464 G A PLEKHG6 Missense_Mutation p.R217Q 0.21 tolerated(0.15) benign(0.36) TCGA-EA-A3HU-01 12 64458903 64458903 C T SRGAP1 Silent p.C343C 0.14 TCGA-EA-A3HU-01 12 64813963 64813963 G A XPOT Silent p.V201V 0.28 TCGA-EA-A3HU-01 12 64858234 64858234 C T TBK1 Nonsense_Mutation p.R117* 0.12 TCGA-EA-A3HU-01 12 6649649 6649649 C T IFFO1 Silent p.%3D 0.22 TCGA-EA-A3HU-01 12 66539731 66539731 G A TMBIM4 Silent p.F118F 0.13 TCGA-EA-A3HU-01 12 6729280 6729280 G A LPAR5 3'UTR 0.12 TCGA-EA-A3HU-01 12 6730127 6730127 C T LPAR5 Silent p.T96T 0.25 TCGA-EA-A3HU-01 12 68553405 68553405 G C IFNG 5'UTR 0.23 TCGA-EA-A3HU-01 12 70729314 70729314 T G CNOT2 Missense_Mutation p.I249R 0.32 tolerated(0.35) benign(0.045) TCGA-EA-A3HU-01 12 71972642 71972642 C G LGR5 Missense_Mutation p.H447D 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-EA-A3HU-01 12 71972644 71972644 C A LGR5 Missense_Mutation p.H447Q 0.20 tolerated(0.39) probably_damaging(0.998) TCGA-EA-A3HU-01 12 74934222 74934222 A G ATXN7L3B 3'UTR 0.14 TCGA-EA-A3HU-01 12 78569092 78569092 G A NAV3 Missense_Mutation p.R1663H 0.21 deleterious(0) probably_damaging(0.979) TCGA-EA-A3HU-01 12 79813096 79813096 T G SYT1 Intron 0.19 TCGA-EA-A3HU-01 12 80735734 80735734 G T OTOGL Missense_Mutation p.C1677F 0.21 tolerated(0.08) probably_damaging(1) TCGA-EA-A3HU-01 12 80764367 80764367 C A OTOGL Missense_Mutation p.H2202Q 0.10 tolerated(0.07) benign(0.084) TCGA-EA-A3HU-01 12 81283065 81283066 CT A LIN7A Frame_Shift_Del p.K55Nfs*22 0.10 TCGA-EA-A3HU-01 12 81283114 81283114 T C LIN7A Silent p.L39L 0.19 TCGA-EA-A3HU-01 12 93162806 93162806 C T PLEKHG7 Nonsense_Mutation p.R328* 0.38 TCGA-EA-A3HU-01 12 98848804 98848804 G A SLC9A7P1 RNA 0.35 TCGA-EA-A3HU-01 13 100544797 100544797 C T CLYBL 3'UTR 0.17 TCGA-EA-A3HU-01 13 103420662 103420662 C G TEX30 Splice_Site p.X83_splice 0.26 TCGA-EA-A3HU-01 13 103514517 103514517 C G BIVM-ERCC5 Missense_Mutation p.P766A 0.15 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-EA-A3HU-01 13 107145421 107145421 C T EFNB2 Silent p.P323P 0.24 TCGA-EA-A3HU-01 13 108885510 108885510 T G ABHD13 3'UTR 0.30 TCGA-EA-A3HU-01 13 108886121 108886121 C T ABHD13 3'UTR 0.16 TCGA-EA-A3HU-01 13 108955643 108955643 G A TNFSF13B Missense_Mutation p.G175E 0.21 deleterious(0.02) probably_damaging(0.944) TCGA-EA-A3HU-01 13 108955665 108955665 G A TNFSF13B Silent p.E182E 0.29 TCGA-EA-A3HU-01 13 110406490 110406490 A C IRS2 3'UTR 0.21 TCGA-EA-A3HU-01 13 110434810 110434810 G A IRS2 Silent p.G1197G 0.36 TCGA-EA-A3HU-01 13 111286919 111286919 G T CARKD Missense_Mutation p.D175Y 0.14 deleterious(0) probably_damaging(0.951) TCGA-EA-A3HU-01 13 111521724 111521724 C T LINC00346 Silent p.T138T 0.16 TCGA-EA-A3HU-01 13 112723484 112723484 C T SOX1 3'UTR 0.25 TCGA-EA-A3HU-01 13 113481157 113481157 C T ATP11A Silent p.G391G 0.13 TCGA-EA-A3HU-01 13 113768192 113768192 G C F7 Missense_Mutation p.Q116H 0.21 deleterious(0.02) probably_damaging(0.981) TCGA-EA-A3HU-01 13 114201654 114201654 C T TMCO3 Missense_Mutation p.T577M 0.26 deleterious(0.01) possibly_damaging(0.487) TCGA-EA-A3HU-01 13 114321720 114321720 G A GRK1 Missense_Mutation p.E7K 0.18 deleterious(0.02) possibly_damaging(0.498) TCGA-EA-A3HU-01 13 20641000 20641000 A G ZMYM2 Missense_Mutation p.R1048G 0.21 deleterious(0.03) benign(0.014) TCGA-EA-A3HU-01 13 24798688 24798688 G A SPATA13 Missense_Mutation p.A541T 0.26 tolerated_low_confidence(0.18) benign(0.084) TCGA-EA-A3HU-01 13 26343298 26343298 C T ATP8A2 Silent p.H833H 0.18 TCGA-EA-A3HU-01 13 26501335 26501335 G A ATP8A2 Intron 0.23 TCGA-EA-A3HU-01 13 29275325 29275325 C G SLC46A3 Intron 0.21 TCGA-EA-A3HU-01 13 30061712 30061712 G C MTUS2 Intron 0.18 TCGA-EA-A3HU-01 13 32937456 32937456 A G BRCA2 Missense_Mutation p.N2706S 0.21 tolerated(1) benign(0.007) TCGA-EA-A3HU-01 13 36049347 36049347 C T MAB21L1 Missense_Mutation p.C310Y 0.28 deleterious(0) probably_damaging(0.994) TCGA-EA-A3HU-01 13 36129178 36129178 G T NBEA Missense_Mutation p.Q2287H 0.24 deleterious(0) probably_damaging(0.99) TCGA-EA-A3HU-01 13 36229092 36229092 T C NBEA Silent p.Y2691Y 0.21 TCGA-EA-A3HU-01 13 36246730 36246730 T G NBEA 3'UTR 0.16 TCGA-EA-A3HU-01 13 36413287 36413287 C T DCLK1 Silent p.T354T 0.16 TCGA-EA-A3HU-01 13 39262583 39262583 G T FREM2 Missense_Mutation p.G368C 0.26 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 13 41768292 41768292 G A KBTBD7 Silent p.F34F 0.16 TCGA-EA-A3HU-01 13 42733412 42733412 C G DGKH Missense_Mutation p.F211L 0.16 tolerated(0.09) possibly_damaging(0.842) TCGA-EA-A3HU-01 13 46936679 46936679 G C KIAA0226L Missense_Mutation p.S327C 0.42 tolerated(0.08) benign(0.03) TCGA-EA-A3HU-01 13 52158943 52158943 C T WDFY2 Silent p.I40I 0.32 TCGA-EA-A3HU-01 13 60453485 60453485 C G DIAPH3 Missense_Mutation p.E829Q 0.24 deleterious(0.02) benign(0.143) TCGA-EA-A3HU-01 13 67477724 67477724 C T PCDH9 Missense_Mutation p.S1017N 0.14 tolerated(0.58) benign(0) TCGA-EA-A3HU-01 13 70514243 70514243 A C KLHL1 Missense_Mutation p.L315V 0.19 deleterious(0) probably_damaging(0.986) TCGA-EA-A3HU-01 13 74988828 74988828 G A AL355390.1 Nonsense_Mutation p.Q97* 0.23 TCGA-EA-A3HU-01 13 78492486 78492486 C T EDNRB Missense_Mutation p.D165N 0.12 tolerated(0.62) benign(0.001) TCGA-EA-A3HU-01 13 96086290 96086290 T G CLDN10 Missense_Mutation p.F68C 0.24 deleterious(0) probably_damaging(0.926) TCGA-EA-A3HU-01 13 99667822 99667822 C T DOCK9 Missense_Mutation p.R14H 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.464) TCGA-EA-A3HU-01 14 102496561 102496561 G A DYNC1H1 Silent p.Q3275Q 0.10 TCGA-EA-A3HU-01 14 104641518 104641518 C T KIF26A Missense_Mutation p.A798V 0.33 tolerated(0.05) benign(0.004) TCGA-EA-A3HU-01 14 105930894 105930894 G A MTA1 Missense_Mutation p.R445H 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-EA-A3HU-01 14 106950293 106950293 C T LINC00221 RNA 0.29 TCGA-EA-A3HU-01 14 106967231 106967231 G A IGHV1-46 Nonsense_Mutation p.R57* 0.23 TCGA-EA-A3HU-01 14 19566031 19566031 G C POTEG Missense_Mutation p.D359H 0.03 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HU-01 14 19566067 19566067 G A POTEG Missense_Mutation p.E371K 0.04 tolerated(0.11) benign(0.061) TCGA-EA-A3HU-01 14 20845581 20845581 T A TEP1 Silent p.V1982V 0.26 TCGA-EA-A3HU-01 14 20852820 20852820 C T TEP1 Missense_Mutation p.A1054T 0.38 tolerated(0.08) benign(0.16) TCGA-EA-A3HU-01 14 20859825 20859825 C T TEP1 Missense_Mutation p.R677H 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-EA-A3HU-01 14 20897148 20897148 A C KLHL33 Missense_Mutation p.C488G 0.30 tolerated(0.63) benign(0.013) TCGA-EA-A3HU-01 14 21464426 21464426 C T METTL17 Missense_Mutation p.A352V 0.17 tolerated(0.18) benign(0.295) TCGA-EA-A3HU-01 14 21559617 21559617 G C ZNF219 Missense_Mutation p.S506C 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-EA-A3HU-01 14 21790060 21790060 T A RPGRIP1 Missense_Mutation p.D553E 0.12 tolerated(0.32) benign(0.029) TCGA-EA-A3HU-01 14 21852117 21852117 G C SUPT16H 5'UTR 0.22 TCGA-EA-A3HU-01 14 22574017 22574017 G C TRAV24 Missense_Mutation p.K79N 0.23 deleterious(0) possibly_damaging(0.734) TCGA-EA-A3HU-01 14 23303715 23303715 G T MRPL52 3'UTR 0.41 TCGA-EA-A3HU-01 14 23528197 23528197 G - ACIN1 3'UTR 0.19 TCGA-EA-A3HU-01 14 23795295 23795296 - T PABPN1 3'UTR 0.38 TCGA-EA-A3HU-01 14 24458159 24458159 G A DHRS4L2 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0.01) benign(0.079) TCGA-EA-A3HU-01 14 24654676 24654676 C T IPO4 Missense_Mutation p.E423K 0.29 deleterious(0) probably_damaging(0.973) TCGA-EA-A3HU-01 14 24774255 24774255 C T NOP9 Missense_Mutation p.A622V 0.17 deleterious(0.02) possibly_damaging(0.477) TCGA-EA-A3HU-01 14 24877215 24877215 C - NYNRIN Frame_Shift_Del p.P115Lfs*4 0.35 TCGA-EA-A3HU-01 14 31404380 31404380 C T STRN3 Missense_Mutation p.G326D 0.32 tolerated(0.08) probably_damaging(1) TCGA-EA-A3HU-01 14 33299906 33299906 A - AKAP6 3'UTR 0.08 TCGA-EA-A3HU-01 14 35498653 35498653 C T SRP54 3'UTR 0.35 TCGA-EA-A3HU-01 14 37131133 37131133 C T PAX9 5'UTR 0.38 TCGA-EA-A3HU-01 14 38724897 38724897 G A CLEC14A Missense_Mutation p.R111W 0.17 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 14 39530996 39530996 C T SEC23A Missense_Mutation p.R493H 0.33 tolerated(0.09) benign(0.321) TCGA-EA-A3HU-01 14 50360595 50360595 C T ARF6 Silent p.F47F 0.28 TCGA-EA-A3HU-01 14 51026870 51026870 G C ATL1 5'UTR 0.32 TCGA-EA-A3HU-01 14 53187672 53187672 C T PSMC6 Missense_Mutation p.R305C 0.35 deleterious(0) benign(0.349) TCGA-EA-A3HU-01 14 55835764 55835764 G T ATG14 3'UTR 0.24 TCGA-EA-A3HU-01 14 55895676 55895676 G T TBPL2 Missense_Mutation p.L269I 0.16 deleterious(0.03) possibly_damaging(0.54) TCGA-EA-A3HU-01 14 56765278 56765278 T - PELI2 3'UTR 0.26 TCGA-EA-A3HU-01 14 57267454 57267454 A G OTX2 3'UTR 0.15 TCGA-EA-A3HU-01 14 60759251 60759251 G T PPM1A 3'UTR 0.27 TCGA-EA-A3HU-01 14 62207863 62207863 C G HIF1A Missense_Mutation p.H708D 0.33 tolerated(0.2) benign(0.063) TCGA-EA-A3HU-01 14 62550973 62550973 G A SYT16 Silent p.T498T 0.17 TCGA-EA-A3HU-01 14 65208577 65208577 C T PLEKHG3 Missense_Mutation p.P725L 0.25 deleterious(0.01) benign(0.099) TCGA-EA-A3HU-01 14 65220353 65220353 C T SPTB Silent p.T2168T 0.24 TCGA-EA-A3HU-01 14 68054881 68054881 C G PLEKHH1 3'UTR 0.21 TCGA-EA-A3HU-01 14 68054885 68054885 G A PLEKHH1 3'UTR 0.34 TCGA-EA-A3HU-01 14 68213538 68213538 C T ZFYVE26 3'UTR 0.32 TCGA-EA-A3HU-01 14 73733225 73733225 G A PAPLN Missense_Mutation p.D1067N 0.11 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 14 74183521 74183521 G C ELMSAN1 3'UTR 0.18 TCGA-EA-A3HU-01 14 74999213 74999213 C T LTBP2 Missense_Mutation p.A635T 0.29 deleterious(0) benign(0.419) TCGA-EA-A3HU-01 14 75302662 75302662 G T YLPM1 3'UTR 0.18 TCGA-EA-A3HU-01 14 76219283 76219283 G A TTLL5 Missense_Mutation p.R512H 0.15 tolerated(0.05) benign(0.104) TCGA-EA-A3HU-01 14 94004472 94004472 G A UNC79 Silent p.A243A 0.18 TCGA-EA-A3HU-01 14 97033431 97033431 A - PAPOLA 3'UTR 0.35 TCGA-EA-A3HU-01 14 99636599 99636599 T - BCL11B 3'UTR 0.33 TCGA-EA-A3HU-01 15 101440802 101440802 C T ALDH1A3 Silent p.A302A 0.35 TCGA-EA-A3HU-01 15 22945110 22945110 C T CYFIP1 Missense_Mutation p.A394V 0.33 tolerated(0.05) benign(0.265) TCGA-EA-A3HU-01 15 25652335 25652335 C T UBE3A Intron 0.38 TCGA-EA-A3HU-01 15 29415702 29415702 G A FAM189A1 Missense_Mutation p.A487V 0.32 tolerated(0.26) benign(0.051) TCGA-EA-A3HU-01 15 34151870 34151870 G A RYR3 Missense_Mutation p.R4746H 0.31 probably_damaging(0.993) TCGA-EA-A3HU-01 15 38243477 38243477 T A TMCO5A 3'UTR 0.38 TCGA-EA-A3HU-01 15 39874402 39874402 G A THBS1 Missense_Mutation p.G26R 0.29 tolerated_low_confidence(0.11) benign(0.002) TCGA-EA-A3HU-01 15 41870925 41870925 G A TYRO3 3'UTR 0.14 TCGA-EA-A3HU-01 15 44084331 44084331 C T SERF2 5'Flank 0.35 TCGA-EA-A3HU-01 15 44907617 44907617 G A SPG11 Silent p.L994L 0.17 TCGA-EA-A3HU-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.24 TCGA-EA-A3HU-01 15 49030519 49030519 G A CEP152 Missense_Mutation p.S1687L 0.32 tolerated(0.26) benign(0.014) TCGA-EA-A3HU-01 15 51828558 51828558 G C DMXL2 Missense_Mutation p.L707V 0.24 tolerated(0.65) possibly_damaging(0.477) TCGA-EA-A3HU-01 15 55474326 55474326 T A RSL24D1 3'UTR 0.28 TCGA-EA-A3HU-01 15 55912411 55912411 T G PRTG Silent p.V1084V 0.11 TCGA-EA-A3HU-01 15 59148462 59148462 T - FAM63B 3'UTR 0.38 TCGA-EA-A3HU-01 15 63571440 63571440 G A APH1B Missense_Mutation p.G65E 0.38 tolerated(1) benign(0.026) TCGA-EA-A3HU-01 15 66612937 66612937 C T DIS3L Missense_Mutation p.S398F 0.27 deleterious(0) possibly_damaging(0.823) TCGA-EA-A3HU-01 15 69715581 69715581 A G KIF23 Missense_Mutation p.Y216C 0.29 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 15 71839722 71839722 C G THSD4 Intron 0.32 TCGA-EA-A3HU-01 15 75644551 75644551 G A NEIL1 Silent p.L178L 0.28 TCGA-EA-A3HU-01 15 75917084 75917084 C A SNUPN 5'UTR 0.53 TCGA-EA-A3HU-01 15 75917230 75917230 C T SNUPN 5'UTR 0.60 TCGA-EA-A3HU-01 15 89074464 89074464 G A DET1 Missense_Mutation p.S169L 0.38 deleterious(0.04) possibly_damaging(0.582) TCGA-EA-A3HU-01 15 93616322 93616322 C T RGMA Intron 0.23 TCGA-EA-A3HU-01 16 11154829 11154829 C T CLEC16A Missense_Mutation p.P689L 0.18 deleterious(0.02) probably_damaging(0.948) TCGA-EA-A3HU-01 16 1271595 1271595 C T CACNA1H 3'UTR 0.18 TCGA-EA-A3HU-01 16 1271731 1271731 G - TPSG1 3'UTR 0.19 TCGA-EA-A3HU-01 16 1544268 1544268 G T TELO2 5'UTR 0.22 TCGA-EA-A3HU-01 16 1818599 1818599 C T MAPK8IP3 Silent p.G1287G 0.32 TCGA-EA-A3HU-01 16 20548681 20548681 C G ACSM2B Missense_Mutation p.E545Q 0.24 deleterious(0) benign(0.193) TCGA-EA-A3HU-01 16 2086471 2086471 C A SLC9A3R2 Silent p.R187R 0.19 TCGA-EA-A3HU-01 16 20870881 20870881 A C DCUN1D3 3'UTR 0.25 TCGA-EA-A3HU-01 16 20871455 20871455 T C DCUN1D3 Missense_Mutation p.Q223R 0.17 tolerated(1) benign(0.005) TCGA-EA-A3HU-01 16 2087934 2087934 C T SLC9A3R2 Silent p.R321R 0.23 TCGA-EA-A3HU-01 16 2088223 2088224 AG - SLC9A3R2 3'UTR 0.32 TCGA-EA-A3HU-01 16 21218297 21218297 C G ZP2 Missense_Mutation p.Q115H 0.28 tolerated(0.06) benign(0.077) TCGA-EA-A3HU-01 16 2160693 2160693 C T PKD1 Missense_Mutation p.R1492H 0.25 benign(0.009) TCGA-EA-A3HU-01 16 21666775 21666775 C T METTL9 3'UTR 0.29 TCGA-EA-A3HU-01 16 2168330 2168330 G C PKD1 Silent p.L221L 0.23 TCGA-EA-A3HU-01 16 2285568 2285568 G A E4F1 Missense_Mutation p.V784I 0.29 deleterious(0.04) possibly_damaging(0.556) TCGA-EA-A3HU-01 16 2329036 2329036 G A ABCA3 Silent p.G1485G 0.18 TCGA-EA-A3HU-01 16 24835021 24835021 C A TNRC6A Missense_Mutation p.L1928M 0.21 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 16 24837227 24837227 G A TNRC6A 3'UTR 0.30 TCGA-EA-A3HU-01 16 25255116 25255116 C G ZKSCAN2 Missense_Mutation p.Q657H 0.25 deleterious(0.04) possibly_damaging(0.602) TCGA-EA-A3HU-01 16 2578499 2578499 C T AMDHD2 Silent p.N303N 0.19 TCGA-EA-A3HU-01 16 2651470 2651470 G A PDPK1 3'UTR 0.33 TCGA-EA-A3HU-01 16 28847934 28847934 G A ATXN2L Intron 0.26 TCGA-EA-A3HU-01 16 29102154 29102154 T C RRN3P2 RNA 0.17 TCGA-EA-A3HU-01 16 29828234 29828234 G A PAGR1 Missense_Mutation p.E130K 0.17 tolerated(0.58) probably_damaging(0.981) TCGA-EA-A3HU-01 16 30387760 30387760 G C MYLPF Missense_Mutation p.K63N 0.17 tolerated(0.16) probably_damaging(0.996) TCGA-EA-A3HU-01 16 30666707 30666707 C G PRR14 Nonsense_Mutation p.S427* 0.21 TCGA-EA-A3HU-01 16 30793608 30793608 G C ZNF629 Missense_Mutation p.Q681E 0.11 deleterious(0.02) possibly_damaging(0.828) TCGA-EA-A3HU-01 16 30793618 30793618 G T ZNF629 Silent p.L677L 0.11 TCGA-EA-A3HU-01 16 30934042 30934042 C T FBXL19 5'Flank 0.21 TCGA-EA-A3HU-01 16 34712972 34712972 A C RP11-80F22.9 RNA 0.18 TCGA-EA-A3HU-01 16 3582933 3582933 G A CLUAP1 Intron 0.17 TCGA-EA-A3HU-01 16 46763007 46763007 G A MYLK3 Silent p.L567L 0.29 TCGA-EA-A3HU-01 16 4738820 4738820 G A MGRN1 Missense_Mutation p.A548T 0.37 tolerated_low_confidence(0.26) benign(0.064) TCGA-EA-A3HU-01 16 47699866 47699866 C T PHKB Intron 0.21 TCGA-EA-A3HU-01 16 4802885 4802885 G - ZNF500 Frame_Shift_Del p.P312Hfs*29 0.24 TCGA-EA-A3HU-01 16 4833954 4833954 A T SEPT12 Missense_Mutation p.F164I 0.07 deleterious(0) probably_damaging(0.995) TCGA-EA-A3HU-01 16 4942154 4942154 C T PPL Missense_Mutation p.E571K 0.27 tolerated(0.1) benign(0.003) TCGA-EA-A3HU-01 16 49433075 49433075 C A C16orf78 Silent p.T228T 0.38 TCGA-EA-A3HU-01 16 50701845 50701845 G - SNX20 3'Flank 0.22 TCGA-EA-A3HU-01 16 50707340 50707340 T A SNX20 Missense_Mutation p.T310S 0.20 tolerated(0.07) benign(0.007) TCGA-EA-A3HU-01 16 50813848 50813848 G C CYLD Missense_Mutation p.E471Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HU-01 16 53635001 53635001 A C RPGRIP1L 3'UTR 0.33 TCGA-EA-A3HU-01 16 55362828 55362828 C T IRX6 Missense_Mutation p.A313V 0.38 tolerated(0.38) benign(0.004) TCGA-EA-A3HU-01 16 57778385 57778385 C T KATNB1 Missense_Mutation p.S84L 0.18 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HU-01 16 624416 624416 G A PIGQ Silent p.A114A 0.31 TCGA-EA-A3HU-01 16 67696338 67696338 G C PARD6A Missense_Mutation p.D277H 0.27 tolerated(0.05) benign(0.417) TCGA-EA-A3HU-01 16 67761744 67761744 C A RANBP10 Missense_Mutation p.R510S 0.26 deleterious(0.01) benign(0.077) TCGA-EA-A3HU-01 16 69341963 69341963 C T SNTB2 3'UTR 0.58 TCGA-EA-A3HU-01 16 70254724 70254724 G A FKSG63 5'Flank 0.16 TCGA-EA-A3HU-01 16 70513169 70513169 C T FUK Missense_Mutation p.R1006W 0.24 deleterious(0.02) benign(0.052) TCGA-EA-A3HU-01 16 70908781 70908781 C T HYDIN Silent p.L3533L 0.25 TCGA-EA-A3HU-01 16 71209609 71209609 C T HYDIN Silent p.S139S 0.32 TCGA-EA-A3HU-01 16 71218810 71218810 C G HYDIN Missense_Mutation p.Q73H 0.22 probably_damaging(0.965) TCGA-EA-A3HU-01 16 712707 712707 C T WDR90 Silent p.L1392L 0.31 TCGA-EA-A3HU-01 16 71674336 71674336 C T MARVELD3 Silent p.L213L 0.18 TCGA-EA-A3HU-01 16 71886916 71886916 C T ATXN1L 3'UTR 0.32 TCGA-EA-A3HU-01 16 71890717 71890717 G T ATXN1L 3'UTR 0.25 TCGA-EA-A3HU-01 16 71997209 71997209 C G PKD1L3 RNA 0.24 TCGA-EA-A3HU-01 16 72058191 72058191 G C DHODH 3'UTR 0.32 TCGA-EA-A3HU-01 16 72142801 72142801 C T DHX38 Missense_Mutation p.H1120Y 0.24 deleterious(0.01) probably_damaging(1) TCGA-EA-A3HU-01 16 72820608 72820608 G T ZFHX3 3'UTR 0.18 TCGA-EA-A3HU-01 16 72821213 72821213 C G ZFHX3 Silent p.S3654S 0.11 TCGA-EA-A3HU-01 16 72828826 72828826 G A ZFHX3 Silent p.A2585A 0.24 TCGA-EA-A3HU-01 16 743701 743701 C T FBXL16 3'UTR 0.20 TCGA-EA-A3HU-01 16 848548 848548 C T GNG13 3'UTR 0.25 TCGA-EA-A3HU-01 16 848685 848685 C T GNG13 3'UTR 0.26 TCGA-EA-A3HU-01 16 85711932 85711932 C T GINS2 Silent p.L148L 0.26 TCGA-EA-A3HU-01 16 87349385 87349385 C T C16orf95 Missense_Mutation p.R66H 0.22 tolerated(0.17) benign(0.151) TCGA-EA-A3HU-01 16 88110455 88110455 G A BANP 3'UTR 0.30 TCGA-EA-A3HU-01 16 88725118 88725118 G A MVD Silent p.R27R 0.27 TCGA-EA-A3HU-01 16 88801158 88801158 C T PIEZO1 Missense_Mutation p.V633M 0.24 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 16 88871169 88871169 G T CDT1 Splice_Site p.X118_splice 0.22 TCGA-EA-A3HU-01 17 10432905 10432905 G C MYH2 Missense_Mutation p.I1031M 0.26 tolerated(0.09) benign(0.03) TCGA-EA-A3HU-01 17 10590073 10590073 C A SCO1 Missense_Mutation p.G248C 0.35 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 17 11535955 11535955 C T DNAH9 Nonsense_Mutation p.R524* 0.17 TCGA-EA-A3HU-01 17 12569325 12569325 G - MYOCD 5'UTR 0.19 TCGA-EA-A3HU-01 17 15976879 15976879 A C NCOR1 Missense_Mutation p.I1225M 0.26 possibly_damaging(0.613) TCGA-EA-A3HU-01 17 16220090 16220090 G A PIGL Intron 0.26 TCGA-EA-A3HU-01 17 16843020 16843020 C T TNFRSF13B Silent p.T241T 0.20 TCGA-EA-A3HU-01 17 16852098 16852098 C T TNFRSF13B Silent p.S133S 0.35 TCGA-EA-A3HU-01 17 17150366 17150366 G A COPS3 3'UTR 0.23 TCGA-EA-A3HU-01 17 17163731 17163731 C T COPS3 Missense_Mutation p.E274K 0.32 tolerated(0.08) possibly_damaging(0.544) TCGA-EA-A3HU-01 17 18045527 18045527 G C MYO15A Missense_Mutation p.K1928N 0.12 unknown(0) TCGA-EA-A3HU-01 17 18194243 18194243 G A TOP3A Silent p.I460I 0.15 TCGA-EA-A3HU-01 17 18855668 18855668 C T SLC5A10 Intron 0.25 TCGA-EA-A3HU-01 17 20768696 20768696 G T CCDC144NL 3'UTR 0.10 TCGA-EA-A3HU-01 17 21144245 21144245 C T C17orf103 3'UTR 0.24 TCGA-EA-A3HU-01 17 21319503 21319503 C T KCNJ12 Silent p.I283I 0.09 TCGA-EA-A3HU-01 17 2186995 2186995 C T SMG6 Missense_Mutation p.R791H 0.30 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 17 2201296 2201296 G C SMG6 Missense_Mutation p.S634C 0.26 tolerated(0.3) benign(0.145) TCGA-EA-A3HU-01 17 2585025 2585025 T G PAFAH1B1 Missense_Mutation p.F388V 0.26 tolerated(0.16) benign(0.065) TCGA-EA-A3HU-01 17 26943196 26943196 T C KIAA0100 Missense_Mutation p.D2103G 0.24 deleterious(0) probably_damaging(0.93) TCGA-EA-A3HU-01 17 27946167 27946167 G A CORO6 Missense_Mutation p.T121M 0.26 deleterious(0.01) possibly_damaging(0.572) TCGA-EA-A3HU-01 17 29645783 29645783 G A EVI2A Silent p.I106I 0.33 TCGA-EA-A3HU-01 17 30520179 30520179 G A RHOT1 Missense_Mutation p.A222T 0.20 tolerated(0.18) benign(0.036) TCGA-EA-A3HU-01 17 30817690 30817690 A - CDK5R1 3'UTR 0.36 TCGA-EA-A3HU-01 17 31048090 31048090 G A MYO1D Missense_Mutation p.R622C 0.25 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 17 3195220 3195220 G A OR3A1 Silent p.I219I 0.21 TCGA-EA-A3HU-01 17 33954732 33954732 C T AP2B1 Missense_Mutation p.A381V 0.25 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HU-01 17 34493311 34493311 G A TBC1D3B 3'UTR 0.15 TCGA-EA-A3HU-01 17 34870339 34870339 G C MYO19 Missense_Mutation p.R224G 0.19 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 17 35873204 35873204 C T DUSP14 3'UTR 0.33 TCGA-EA-A3HU-01 17 35879070 35879070 A G SYNRG Silent p.P1306P 0.16 TCGA-EA-A3HU-01 17 3629039 3629039 G C GSG2 Missense_Mutation p.E604Q 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-EA-A3HU-01 17 36654048 36654048 G A ARHGAP23 Missense_Mutation p.E1100K 0.14 tolerated(0.2) benign(0.01) TCGA-EA-A3HU-01 17 36922918 36922918 C T PIP4K2B 3'UTR 0.28 TCGA-EA-A3HU-01 17 36962572 36962572 G A CWC25 Nonsense_Mutation p.R327* 0.17 TCGA-EA-A3HU-01 17 38066075 38066075 C T GSDMB Silent p.L170L 0.31 TCGA-EA-A3HU-01 17 38350155 38350155 C T RAPGEFL1 3'UTR 0.32 TCGA-EA-A3HU-01 17 38975779 38975781 CTT - KRT10 In_Frame_Del p.E454del 0.38 TCGA-EA-A3HU-01 17 3919733 3919733 G T ZZEF1 Silent p.R2677R 0.15 TCGA-EA-A3HU-01 17 39253665 39253665 T C KRTAP4-8 3'UTR 0.20 TCGA-EA-A3HU-01 17 39553570 39553570 C T KRT31 Silent p.V74V 0.21 TCGA-EA-A3HU-01 17 39975635 39975635 A G FKBP10 Missense_Mutation p.T301A 0.21 deleterious(0.03) benign(0.019) TCGA-EA-A3HU-01 17 40269601 40269601 G A KAT2A Missense_Mutation p.S481L 0.25 deleterious(0.03) benign(0.296) TCGA-EA-A3HU-01 17 40342753 40342753 G A GHDC Nonsense_Mutation p.R393* 0.21 TCGA-EA-A3HU-01 17 40766958 40766958 G C TUBG1 Missense_Mutation p.D419H 0.26 deleterious(0.04) benign(0.276) TCGA-EA-A3HU-01 17 41008322 41008322 C G AOC3 Missense_Mutation p.L683V 0.28 deleterious(0.01) probably_damaging(0.963) TCGA-EA-A3HU-01 17 41380553 41380553 C T LINC00854 RNA 0.09 TCGA-EA-A3HU-01 17 42477228 42477228 G A GPATCH8 Silent p.G739G 0.30 TCGA-EA-A3HU-01 17 43483117 43483117 G A ARHGAP27 5'UTR 0.25 TCGA-EA-A3HU-01 17 45679078 45679078 G T NPEPPS Missense_Mutation p.V569F 0.13 tolerated(0.14) benign(0.015) TCGA-EA-A3HU-01 17 45700600 45700601 - A NPEPPS 3'UTR 0.32 TCGA-EA-A3HU-01 17 45789166 45789166 G C TBKBP1 3'UTR 0.13 TCGA-EA-A3HU-01 17 46148160 46148160 T A CBX1 3'UTR 0.16 TCGA-EA-A3HU-01 17 46620387 46620387 C A HOXB2 3'UTR 0.20 TCGA-EA-A3HU-01 17 46703486 46703486 G A HOXB9 Missense_Mutation p.S49L 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A3HU-01 17 47123299 47123299 T G IGF2BP1 Silent p.G481G 0.29 TCGA-EA-A3HU-01 17 47590069 47590069 G T NGFR Splice_Site p.X328_splice 0.28 TCGA-EA-A3HU-01 17 4794897 4794897 G A MINK1 Silent p.T629T 0.19 TCGA-EA-A3HU-01 17 4842251 4842251 G A SLC25A11 Missense_Mutation p.R90C 0.26 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 17 57915674 57915679 TCCATC - VMP1 In_Frame_Del p.P332_S333del 0.37 TCGA-EA-A3HU-01 17 57917481 57917481 T C VMP1 3'UTR 0.31 TCGA-EA-A3HU-01 17 60493572 60493572 A G EFCAB3 Missense_Mutation p.Y452C 0.28 tolerated(0.18) benign(0.01) TCGA-EA-A3HU-01 17 62502320 62502320 G A DDX5 5'UTR 0.11 TCGA-EA-A3HU-01 17 62745955 62745955 G C hsa-mir-6080 RNA 0.19 TCGA-EA-A3HU-01 17 6337302 6337302 G C AIPL1 Silent p.V71V 0.12 TCGA-EA-A3HU-01 17 64092438 64092438 C T CEP112 Silent p.P233P 0.24 TCGA-EA-A3HU-01 17 67023208 67023208 C A ABCA9 Missense_Mutation p.R653S 0.24 deleterious(0.01) possibly_damaging(0.901) TCGA-EA-A3HU-01 17 67039792 67039792 A T ABCA9 Nonsense_Mutation p.L213* 0.35 TCGA-EA-A3HU-01 17 67309320 67309320 G C ABCA5 Missense_Mutation p.L74V 0.31 tolerated(1) benign(0.12) TCGA-EA-A3HU-01 17 72584927 72584927 T G CD300LD Silent p.S34S 0.19 TCGA-EA-A3HU-01 17 72915595 72915595 G T USH1G Silent p.R446R 0.27 TCGA-EA-A3HU-01 17 72952038 72952038 G A HID1 Silent p.L495L 0.12 TCGA-EA-A3HU-01 17 7386210 7386210 G C SLC35G6 Missense_Mutation p.E303Q 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-EA-A3HU-01 17 73888183 73888183 C T TRIM65 Silent p.L276L 0.32 TCGA-EA-A3HU-01 17 74018065 74018065 C T EVPL Silent p.T230T 0.37 TCGA-EA-A3HU-01 17 7612856 7612856 C - EFNB3 Frame_Shift_Del p.Q331Rfs*39 0.30 TCGA-EA-A3HU-01 17 7614643 7614643 G A EFNB3 3'UTR 0.16 TCGA-EA-A3HU-01 17 76425370 76425370 G A DNAH17 Silent p.D4073D 0.20 TCGA-EA-A3HU-01 17 7682665 7682665 C T DNAH2 Silent p.G1882G 0.21 TCGA-EA-A3HU-01 17 76993650 76993650 G A CANT1 Missense_Mutation p.R19W 0.31 deleterious_low_confidence(0.05) benign(0.022) TCGA-EA-A3HU-01 17 7721130 7721130 C G DNAH2 Missense_Mutation p.Q3398E 0.23 probably_damaging(0.999) TCGA-EA-A3HU-01 17 7804021 7804021 G A CHD3 Missense_Mutation p.V1043I 0.25 benign(0.312) TCGA-EA-A3HU-01 17 78163567 78163567 C T CARD14 Silent p.L287L 0.24 TCGA-EA-A3HU-01 17 78337555 78337555 C T RNF213 Silent p.S3905S 0.50 TCGA-EA-A3HU-01 17 78443066 78443066 G C NPTX1 3'UTR 0.50 TCGA-EA-A3HU-01 17 78681708 78681708 G A RPTOR Missense_Mutation p.R139H 0.28 deleterious(0) probably_damaging(0.981) TCGA-EA-A3HU-01 17 79202880 79202880 G A ENTHD2 Silent p.L476L 0.22 TCGA-EA-A3HU-01 17 79503718 79503718 C T FSCN2 Silent p.F416F 0.36 TCGA-EA-A3HU-01 17 80011870 80011870 A T GPS1 Missense_Mutation p.T125S 0.35 tolerated(0.21) possibly_damaging(0.775) TCGA-EA-A3HU-01 17 80321073 80321073 C A TEX19 3'UTR 0.16 TCGA-EA-A3HU-01 17 8222168 8222168 G A ARHGEF15 Missense_Mutation p.R658H 0.28 deleterious(0.03) probably_damaging(0.961) TCGA-EA-A3HU-01 18 18530891 18530892 - A ROCK1 3'UTR 0.33 TCGA-EA-A3HU-01 18 19449359 19449359 A T MIB1 3'UTR 0.19 TCGA-EA-A3HU-01 18 22806010 22806010 T A ZNF521 Silent p.G624G 0.35 TCGA-EA-A3HU-01 18 23713878 23713878 C T PSMA8 5'UTR 0.37 TCGA-EA-A3HU-01 18 23714030 23714030 C T PSMA8 Missense_Mutation p.A34V 0.27 tolerated(0.2) benign(0.03) TCGA-EA-A3HU-01 18 30252909 30252909 G C KLHL14 3'UTR 0.19 TCGA-EA-A3HU-01 18 31599440 31599440 C T NOL4 Missense_Mutation p.D300N 0.25 deleterious(0.01) benign(0.357) TCGA-EA-A3HU-01 18 3534369 3534369 G T DLGAP1 Missense_Mutation p.P768T 0.24 deleterious(0.01) probably_damaging(1) TCGA-EA-A3HU-01 18 39644745 39644745 A T PIK3C3 Missense_Mutation p.D825V 0.37 deleterious(0) probably_damaging(0.952) TCGA-EA-A3HU-01 18 43844182 43844182 G A C18orf25 3'UTR 0.18 TCGA-EA-A3HU-01 18 47917639 47917639 G C SKA1 Missense_Mutation p.D199H 0.35 deleterious(0.01) possibly_damaging(0.528) TCGA-EA-A3HU-01 18 48257130 48257130 T G MAPK4 3'UTR 0.33 TCGA-EA-A3HU-01 18 48573511 48573511 G C SMAD4 Missense_Mutation p.S32T 0.16 tolerated(0.1) benign(0.002) TCGA-EA-A3HU-01 18 54305579 54305579 C T TXNL1 Missense_Mutation p.M31I 0.17 tolerated(0.05) benign(0.034) TCGA-EA-A3HU-01 18 55153929 55153929 T - ONECUT2 3'UTR 0.17 TCGA-EA-A3HU-01 18 59483144 59483144 T C RNF152 Missense_Mutation p.I185V 0.19 tolerated(0.18) possibly_damaging(0.847) TCGA-EA-A3HU-01 18 64172242 64172242 T A CDH19 Missense_Mutation p.D709V 0.19 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 18 67860578 67860578 C G RTTN Missense_Mutation p.R318P 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-EA-A3HU-01 18 6894870 6894870 T G ARHGAP28 Missense_Mutation p.S470A 0.26 tolerated(0.14) benign(0.08) TCGA-EA-A3HU-01 18 72342943 72342943 G A ZNF407 5'Flank 0.38 TCGA-EA-A3HU-01 18 77170429 77170429 G A NFATC1 Missense_Mutation p.V39I 0.28 tolerated(0.44) benign(0.005) TCGA-EA-A3HU-01 19 1014419 1014419 C T TMEM259 Silent p.S93S 0.23 TCGA-EA-A3HU-01 19 10262176 10262176 G A DNMT1 Silent p.V721V 0.11 TCGA-EA-A3HU-01 19 10433397 10433397 G - RAVER1 Frame_Shift_Del p.P383Qfs*141 0.17 TCGA-EA-A3HU-01 19 10446397 10446397 C T ICAM3 Missense_Mutation p.G200E 0.16 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 19 10469949 10469949 C T TYK2 Missense_Mutation p.G693R 0.17 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 19 10945990 10945990 C A TMED1 Nonsense_Mutation p.E75* 0.18 TCGA-EA-A3HU-01 19 10959157 10959157 C T C19orf38 5'UTR 0.11 TCGA-EA-A3HU-01 19 11105560 11105560 C A SMARCA4 Silent p.S492S 0.20 TCGA-EA-A3HU-01 19 1116100 1116100 C A SBNO2 Missense_Mutation p.G602V 0.12 deleterious(0.01) probably_damaging(0.954) TCGA-EA-A3HU-01 19 11361763 11361763 C G DOCK6 Splice_Site p.X170_splice 0.20 TCGA-EA-A3HU-01 19 11531613 11531613 C T CCDC151 Missense_Mutation p.E560K 0.25 deleterious(0) probably_damaging(0.995) TCGA-EA-A3HU-01 19 11660436 11660436 G A CNN1 Silent p.T240T 0.19 TCGA-EA-A3HU-01 19 11891821 11891821 T C ZNF441 Silent p.C394C 0.14 TCGA-EA-A3HU-01 19 12127369 12127369 C T ZNF433 Missense_Mutation p.E105K 0.13 tolerated(0.18) benign(0.003) TCGA-EA-A3HU-01 19 12267430 12267430 C T ZNF625 5'UTR 0.12 TCGA-EA-A3HU-01 19 1257578 1257578 G A MIDN 3'UTR 0.14 TCGA-EA-A3HU-01 19 12780007 12780007 C T WDR83OS Missense_Mutation p.D31N 0.34 tolerated(0.06) benign(0.221) TCGA-EA-A3HU-01 19 12817262 12817262 T A TNPO2 Intron 0.21 TCGA-EA-A3HU-01 19 12841623 12841623 G A C19orf43 3'UTR 0.08 TCGA-EA-A3HU-01 19 12878705 12878705 C T HOOK2 Missense_Mutation p.E410K 0.19 deleterious(0) probably_damaging(0.964) TCGA-EA-A3HU-01 19 13008169 13008169 G T GCDH Missense_Mutation p.A337S 0.15 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-EA-A3HU-01 19 13862455 13862455 C T CCDC130 5'UTR 0.22 TCGA-EA-A3HU-01 19 14024066 14024066 G T CC2D1A Missense_Mutation p.R155I 0.23 deleterious(0) possibly_damaging(0.522) TCGA-EA-A3HU-01 19 14024406 14024406 G A CC2D1A Missense_Mutation p.A235T 0.15 tolerated(0.35) benign(0.005) TCGA-EA-A3HU-01 19 14040251 14040251 G A CC2D1A Missense_Mutation p.R860Q 0.15 deleterious(0.01) possibly_damaging(0.734) TCGA-EA-A3HU-01 19 15349885 15349885 C T BRD4 Missense_Mutation p.R1256Q 0.31 benign(0.238) TCGA-EA-A3HU-01 19 15539200 15539200 G C WIZ Intron 0.29 TCGA-EA-A3HU-01 19 15905729 15905729 T G OR10H5 Missense_Mutation p.F291V 0.26 deleterious(0.01) possibly_damaging(0.45) TCGA-EA-A3HU-01 19 1611093 1611093 A - TCF3 3'UTR 0.28 TCGA-EA-A3HU-01 19 16683100 16683100 C T SLC35E1 Missense_Mutation p.E26K 0.29 tolerated(0.13) unknown(0) TCGA-EA-A3HU-01 19 17435963 17435963 C T ANO8 Missense_Mutation p.R965H 0.23 deleterious(0) unknown(0) TCGA-EA-A3HU-01 19 17838081 17838081 G A MAP1S Missense_Mutation p.A630T 0.50 tolerated(0.17) benign(0.001) TCGA-EA-A3HU-01 19 1785261 1785261 G A ATP8B3 Silent p.C1143C 0.14 TCGA-EA-A3HU-01 19 1787158 1787158 G T ATP8B3 Missense_Mutation p.L1033I 0.29 deleterious(0.02) possibly_damaging(0.786) TCGA-EA-A3HU-01 19 1819021 1819021 C T REXO1 Silent p.L920L 0.12 TCGA-EA-A3HU-01 19 18572600 18572600 G A ELL Missense_Mutation p.R178W 0.14 deleterious(0.03) benign(0.051) TCGA-EA-A3HU-01 19 18643565 18643565 G A FKBP8 Missense_Mutation p.A355V 0.32 tolerated(0.08) benign(0.098) TCGA-EA-A3HU-01 19 19014100 19014100 G T COPE Missense_Mutation p.L238M 0.23 tolerated(0.13) benign(0.217) TCGA-EA-A3HU-01 19 19293486 19293486 C T MEF2BNB Silent p.V74V 0.14 TCGA-EA-A3HU-01 19 19672718 19672718 G A PBX4 3'UTR 0.16 TCGA-EA-A3HU-01 19 19737448 19737448 G A LPAR2 Missense_Mutation p.R216W 0.27 deleterious(0.03) benign(0.235) TCGA-EA-A3HU-01 19 19790233 19790233 A G ZNF101 Silent p.Q145Q 0.25 TCGA-EA-A3HU-01 19 2642783 2642783 C T GNG7 Intron 0.16 TCGA-EA-A3HU-01 19 30505884 30505884 C A URI1 Missense_Mutation p.P506T 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.881) TCGA-EA-A3HU-01 19 31766716 31766717 - A TSHZ3 3'UTR 0.39 TCGA-EA-A3HU-01 19 33871416 33871416 T - CEBPG 3'UTR 0.22 TCGA-EA-A3HU-01 19 34818996 34818996 G A KIAA0355 Silent p.S348S 0.32 TCGA-EA-A3HU-01 19 34912433 34912433 G C PDCD2L Missense_Mutation p.W269C 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-EA-A3HU-01 19 35175900 35175900 A T ZNF302 Nonsense_Mutation p.K320* 0.18 TCGA-EA-A3HU-01 19 3543278 3543278 C G C19orf71 Missense_Mutation p.I43M 0.10 deleterious(0.03) probably_damaging(0.943) TCGA-EA-A3HU-01 19 35613710 35613710 G T FXYD3 Missense_Mutation p.V104F 0.17 deleterious(0) possibly_damaging(0.828) TCGA-EA-A3HU-01 19 35625473 35625473 C T LGI4 Missense_Mutation p.A38T 0.15 deleterious(0.04) benign(0.028) TCGA-EA-A3HU-01 19 35715967 35715967 C T FAM187B Missense_Mutation p.E291K 0.23 deleterious(0.02) possibly_damaging(0.749) TCGA-EA-A3HU-01 19 35804369 35804369 G A MAG 3'UTR 0.11 TCGA-EA-A3HU-01 19 35940660 35940660 T G FFAR2 Missense_Mutation p.I15S 0.18 deleterious(0.02) benign(0.243) TCGA-EA-A3HU-01 19 36270768 36270768 G A ARHGAP33 Intron 0.24 TCGA-EA-A3HU-01 19 36497520 36497520 C T SYNE4 Silent p.S224S 0.21 TCGA-EA-A3HU-01 19 36518143 36518143 G A CLIP3 Missense_Mutation p.A66V 0.16 tolerated(0.08) possibly_damaging(0.874) TCGA-EA-A3HU-01 19 36851367 36851367 C T ZFP14 Missense_Mutation p.V69M 0.38 tolerated(0.31) benign(0.001) TCGA-EA-A3HU-01 19 37005778 37005778 T A ZNF260 Silent p.P121P 0.13 TCGA-EA-A3HU-01 19 37118176 37118176 G - ZNF382 Frame_Shift_Del p.E461Kfs*84 0.29 TCGA-EA-A3HU-01 19 37961248 37961248 G A ZNF570 5'UTR 0.18 TCGA-EA-A3HU-01 19 3823381 3823381 C A ZFR2 Missense_Mutation p.A412S 0.15 tolerated(0.08) benign(0.094) TCGA-EA-A3HU-01 19 3825390 3825390 C T ZFR2 Missense_Mutation p.A351T 0.19 tolerated(1) benign(0) TCGA-EA-A3HU-01 19 38383943 38383943 G A WDR87 Silent p.L761L 0.21 TCGA-EA-A3HU-01 19 38857867 38857867 G A CATSPERG Silent p.T895T 0.33 TCGA-EA-A3HU-01 19 3909586 3909586 G A ATCAY Silent p.L250L 0.16 TCGA-EA-A3HU-01 19 39575960 39575960 C G PAPL Missense_Mutation p.F17L 0.13 tolerated(0.23) benign(0) TCGA-EA-A3HU-01 19 3964273 3964273 G C DAPK3 Missense_Mutation p.F174L 0.18 tolerated(0.19) benign(0.068) TCGA-EA-A3HU-01 19 39819686 39819686 T C GMFG Missense_Mutation p.Y104C 0.23 deleterious(0.02) benign(0.204) TCGA-EA-A3HU-01 19 40362851 40362851 G A FCGBP Silent p.F5073F 0.21 TCGA-EA-A3HU-01 19 40710431 40710431 C T MAP3K10 Silent p.V301V 0.17 TCGA-EA-A3HU-01 19 40718780 40718780 G A MAP3K10 Missense_Mutation p.G541S 0.21 tolerated(1) benign(0) TCGA-EA-A3HU-01 19 40885390 40885390 T G HIPK4 3'UTR 0.33 TCGA-EA-A3HU-01 19 41083465 41083465 C T SHKBP1 Silent p.I63I 0.11 TCGA-EA-A3HU-01 19 41306665 41306665 C - EGLN2 Frame_Shift_Del p.R65Efs*86 0.23 TCGA-EA-A3HU-01 19 41313983 41313983 G A EGLN2 3'UTR 0.20 TCGA-EA-A3HU-01 19 4168383 4168383 A C CREB3L3 Missense_Mutation p.K250N 0.19 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 19 422217 422217 C T SHC2 Missense_Mutation p.G517R 0.16 deleterious(0) probably_damaging(0.917) TCGA-EA-A3HU-01 19 42355654 42355654 C G DMRTC2 Missense_Mutation p.P332A 0.08 tolerated(0.12) benign(0.015) TCGA-EA-A3HU-01 19 4262097 4262097 G A CCDC94 Missense_Mutation p.A232T 0.14 tolerated(0.58) benign(0.077) TCGA-EA-A3HU-01 19 42735003 42735003 C T GSK3A Silent p.P465P 0.23 TCGA-EA-A3HU-01 19 42791514 42791514 G A CIC Silent p.P165P 0.37 TCGA-EA-A3HU-01 19 42818959 42818959 G A TMEM145 Missense_Mutation p.G126R 0.19 tolerated(0.06) possibly_damaging(0.59) TCGA-EA-A3HU-01 19 4310560 4310560 C T FSD1 Missense_Mutation p.R153W 0.21 deleterious(0) possibly_damaging(0.507) TCGA-EA-A3HU-01 19 43762460 43762460 G C PSG9 Silent p.L379L 0.40 TCGA-EA-A3HU-01 19 43762463 43762463 C G PSG9 Missense_Mutation p.K378N 0.41 tolerated(0.32) benign(0.008) TCGA-EA-A3HU-01 19 438806 438806 C T SHC2 Missense_Mutation p.G211D 0.18 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 19 44012168 44012168 G A ETHE1 Missense_Mutation p.R214W 0.15 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 19 44222854 44222854 C T IRGC Silent p.A48A 0.21 TCGA-EA-A3HU-01 19 44777426 44777426 A C ZNF233 Missense_Mutation p.N205H 0.18 tolerated(0.06) benign(0.099) TCGA-EA-A3HU-01 19 4508870 4508870 C T PLIN4 Silent p.Q1190Q 0.15 TCGA-EA-A3HU-01 19 4548371 4548371 G A SEMA6B Missense_Mutation p.T453M 0.22 tolerated(0.09) probably_damaging(0.999) TCGA-EA-A3HU-01 19 46002355 46002355 G C PPM1N Missense_Mutation p.E209Q 0.24 deleterious(0.03) benign(0.1) TCGA-EA-A3HU-01 19 46178253 46178253 G A GIPR Intron 0.22 TCGA-EA-A3HU-01 19 46206302 46206302 C T QPCTL Missense_Mutation p.L382F 0.14 tolerated(0.05) possibly_damaging(0.726) TCGA-EA-A3HU-01 19 46520259 46520259 C T CCDC61 Silent p.F414F 0.22 TCGA-EA-A3HU-01 19 4770688 4770688 G C MIR7-3 RNA 0.13 TCGA-EA-A3HU-01 19 48246026 48246026 G A EHD2 3'UTR 0.15 TCGA-EA-A3HU-01 19 48636269 48636269 G A LIG1 Silent p.C565C 0.21 TCGA-EA-A3HU-01 19 49116504 49116504 G A FAM83E Silent p.G42G 0.09 TCGA-EA-A3HU-01 19 49392834 49392834 G T TULP2 Nonsense_Mutation p.S190* 0.21 TCGA-EA-A3HU-01 19 49632669 49632669 C T PPFIA3 Silent p.R180R 0.18 TCGA-EA-A3HU-01 19 49703880 49703882 TTC - TRPM4 In_Frame_Del p.F933del 0.48 TCGA-EA-A3HU-01 19 50100877 50100877 C A PRR12 Nonsense_Mutation p.Y1095* 0.44 TCGA-EA-A3HU-01 19 50910593 50910593 G A POLD1 Missense_Mutation p.E566K 0.18 tolerated(0.78) benign(0.105) TCGA-EA-A3HU-01 19 50958852 50958852 C T MYBPC2 Silent p.I763I 0.11 TCGA-EA-A3HU-01 19 51189590 51189590 G A SHANK1 Silent p.A827A 0.28 TCGA-EA-A3HU-01 19 51410259 51410259 G A KLK4 Silent p.G232G 0.19 TCGA-EA-A3HU-01 19 51499381 51499381 A T KLK8 Silent p.P284P 0.17 TCGA-EA-A3HU-01 19 51532357 51532357 T C KLK12 3'Flank 0.45 TCGA-EA-A3HU-01 19 51535321 51535321 C T KLK12 Missense_Mutation p.G90S 0.18 tolerated(0.57) benign(0.099) TCGA-EA-A3HU-01 19 51857829 51857829 T G ETFB Silent p.R22R 0.16 TCGA-EA-A3HU-01 19 52003582 52003582 C A SIGLEC12 Intron 0.15 TCGA-EA-A3HU-01 19 52272492 52272492 C T FPR2 Missense_Mutation p.A194V 0.21 tolerated(0.51) benign(0.014) TCGA-EA-A3HU-01 19 52568470 52568470 G A ZNF841 Missense_Mutation p.R889C 0.12 tolerated(0.19) probably_damaging(0.912) TCGA-EA-A3HU-01 19 52569670 52569670 C T ZNF841 Missense_Mutation p.E489K 0.12 deleterious(0.04) benign(0.037) TCGA-EA-A3HU-01 19 52795467 52795467 G A ZNF766 3'UTR 0.27 TCGA-EA-A3HU-01 19 53058742 53058742 G A ZNF808 Missense_Mutation p.R858H 0.10 tolerated(0.64) benign(0.006) TCGA-EA-A3HU-01 19 53302826 53302826 G C ZNF28 3'UTR 0.20 TCGA-EA-A3HU-01 19 53793036 53793036 C T BIRC8 Missense_Mutation p.A198T 0.18 tolerated(0.09) benign(0.21) TCGA-EA-A3HU-01 19 53958029 53958029 G A ZNF761 RNA 0.11 TCGA-EA-A3HU-01 19 54185499 54185499 A G MIR520F RNA 0.19 TCGA-EA-A3HU-01 19 54544289 54544289 C T VSTM1 Missense_Mutation p.A213T 0.19 tolerated(0.18) benign(0.013) TCGA-EA-A3HU-01 19 5456111 5456111 G A ZNRF4 Silent p.L203L 0.13 TCGA-EA-A3HU-01 19 5456482 5456482 G A ZNRF4 Missense_Mutation p.C327Y 0.11 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 19 54646905 54646905 G C CNOT3 Missense_Mutation p.E26Q 0.29 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HU-01 19 54818718 54818718 G - LILRA5 Frame_Shift_Del p.Q294Kfs*35 0.23 TCGA-EA-A3HU-01 19 54932529 54932529 C T TTYH1 Silent p.H128H 0.11 TCGA-EA-A3HU-01 19 56089330 56089330 C - ZNF579 Frame_Shift_Del p.G559Afs*16 0.25 TCGA-EA-A3HU-01 19 56166467 56166467 C T U2AF2 5'UTR 0.29 TCGA-EA-A3HU-01 19 56196968 56196968 G A EPN1 Silent p.A256A 0.31 TCGA-EA-A3HU-01 19 5622699 5622699 C A SAFB2 Missense_Mutation p.D10Y 0.12 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-EA-A3HU-01 19 56297128 56297128 T A NLRP11 Nonsense_Mutation p.R989* 0.18 TCGA-EA-A3HU-01 19 5654185 5654185 C T SAFB Missense_Mutation p.S547L 0.20 deleterious(0.01) benign(0.119) TCGA-EA-A3HU-01 19 56889033 56889033 G A AC006116.24 5'Flank 0.11 TCGA-EA-A3HU-01 19 57158923 57158923 C A SMIM17 Intron 0.18 TCGA-EA-A3HU-01 19 57669800 57669800 G A DUXA Nonsense_Mutation p.Q112* 0.12 TCGA-EA-A3HU-01 19 5783426 5783426 A C PRR22 Missense_Mutation p.L278V 0.12 tolerated(0.1) benign(0.013) TCGA-EA-A3HU-01 19 57876218 57876218 A G TRAPPC2P1 Missense_Mutation p.Y6C 0.10 tolerated(0.1) benign(0.009) TCGA-EA-A3HU-01 19 58018541 58018541 G C ZNF773 Missense_Mutation p.E360Q 0.17 deleterious(0.03) benign(0.414) TCGA-EA-A3HU-01 19 58064096 58064096 G A ZNF550 Intron 0.30 TCGA-EA-A3HU-01 19 58117823 58117823 C T ZNF530 Silent p.L310L 0.16 TCGA-EA-A3HU-01 19 58117826 58117826 T A ZNF530 Silent p.I311I 0.16 TCGA-EA-A3HU-01 19 58152932 58152932 C T ZNF211 Missense_Mutation p.R425C 0.25 deleterious(0.02) possibly_damaging(0.806) TCGA-EA-A3HU-01 19 58353393 58353393 G A ZNF587B Intron 0.24 TCGA-EA-A3HU-01 19 58371167 58371167 C T ZNF587 Missense_Mutation p.P463S 0.24 deleterious(0.02) probably_damaging(0.926) TCGA-EA-A3HU-01 19 58385022 58385022 C T ZNF814 Missense_Mutation p.G579E 0.23 tolerated(0.09) probably_damaging(0.993) TCGA-EA-A3HU-01 19 58453482 58453482 C T ZNF256 Missense_Mutation p.D232N 0.29 tolerated(0.07) possibly_damaging(0.46) TCGA-EA-A3HU-01 19 58565041 58565041 G A ZSCAN1 Silent p.P283P 0.32 TCGA-EA-A3HU-01 19 58846467 58846467 C T ZSCAN22 Missense_Mutation p.A100V 0.21 tolerated(0.32) benign(0.001) TCGA-EA-A3HU-01 19 6211408 6211408 G T MLLT1 3'Flank 0.14 TCGA-EA-A3HU-01 19 648250 648250 T A RNF126 Missense_Mutation p.S272C 0.18 deleterious(0) probably_damaging(0.992) TCGA-EA-A3HU-01 19 6501390 6501390 C T TUBB4A Missense_Mutation p.R62K 0.18 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-EA-A3HU-01 19 6760703 6760703 C T SH2D3A Missense_Mutation p.R122H 0.19 tolerated(0.09) possibly_damaging(0.664) TCGA-EA-A3HU-01 19 6937311 6937311 G A EMR1 Silent p.L813L 0.23 TCGA-EA-A3HU-01 19 757449 757449 G T MISP Missense_Mutation p.G168V 0.10 tolerated(0.33) benign(0.023) TCGA-EA-A3HU-01 19 7584411 7584411 G A ZNF358 Missense_Mutation p.D95N 0.20 tolerated(0.14) probably_damaging(0.99) TCGA-EA-A3HU-01 19 7619897 7619897 G A PNPLA6 Missense_Mutation p.C928Y 0.19 deleterious(0.01) benign(0.209) TCGA-EA-A3HU-01 19 7675783 7675783 G A CAMSAP3 Missense_Mutation p.E366K 0.18 tolerated(0.68) possibly_damaging(0.547) TCGA-EA-A3HU-01 19 7685819 7685819 C T XAB2 Silent p.Q628Q 0.19 TCGA-EA-A3HU-01 19 7830694 7830694 A C CLEC4M Missense_Mutation p.K129Q 0.04 deleterious(0.05) probably_damaging(0.989) TCGA-EA-A3HU-01 19 7997609 7997609 G A TIMM44 Missense_Mutation p.S297L 0.16 deleterious(0.03) probably_damaging(0.978) TCGA-EA-A3HU-01 19 804873 804874 - A PTBP1 Frame_Shift_Ins p.N219Efs*52 0.12 TCGA-EA-A3HU-01 19 8503751 8503751 G A MARCH2 3'UTR 0.48 TCGA-EA-A3HU-01 19 8553925 8553925 G A HNRNPM 3'UTR 0.17 TCGA-EA-A3HU-01 19 9949265 9949265 C T PIN1 Missense_Mutation p.S71L 0.12 deleterious(0) probably_damaging(0.97) TCGA-EA-A3HU-01 1 100534122 100534122 T - HIAT1 Frame_Shift_Del p.L269Yfs*6 0.33 TCGA-EA-A3HU-01 1 109276098 109276098 C T FNDC7 Missense_Mutation p.S695L 0.21 deleterious(0) possibly_damaging(0.802) TCGA-EA-A3HU-01 1 109477372 109477372 C G CLCC1 Missense_Mutation p.D526H 0.19 deleterious(0.02) benign(0.006) TCGA-EA-A3HU-01 1 109817461 109817461 A - CELSR2 3'UTR 0.25 TCGA-EA-A3HU-01 1 109837879 109837879 C T MYBPHL Missense_Mutation p.G303D 0.19 tolerated(0.45) benign(0.074) TCGA-EA-A3HU-01 1 109883466 109883466 G A SORT1 Nonsense_Mutation p.R382* 0.20 TCGA-EA-A3HU-01 1 110169454 110169454 G A AMPD2 Missense_Mutation p.R267H 0.30 deleterious(0.03) benign(0.346) TCGA-EA-A3HU-01 1 111033838 111033838 G A RP11-470L19.2 5'Flank 0.20 TCGA-EA-A3HU-01 1 11141202 11141202 G A EXOSC10 Silent p.R458R 0.22 TCGA-EA-A3HU-01 1 112998784 112998784 G C CTTNBP2NL Missense_Mutation p.E224Q 0.27 deleterious(0) benign(0.26) TCGA-EA-A3HU-01 1 113189878 113189878 T G CAPZA1 Missense_Mutation p.F29C 0.26 deleterious(0.03) possibly_damaging(0.887) TCGA-EA-A3HU-01 1 113243778 113243778 C - RHOC 3'UTR 0.29 TCGA-EA-A3HU-01 1 113265740 113265740 C T FAM19A3 Missense_Mutation p.S73F 0.12 deleterious(0) probably_damaging(0.929) TCGA-EA-A3HU-01 1 114442773 114442773 G A AP4B1 Silent p.S289S 0.17 TCGA-EA-A3HU-01 1 114935756 114935756 A C TRIM33 3'UTR 0.14 TCGA-EA-A3HU-01 1 11589700 11589700 C T PTCHD2 Silent p.P962P 0.23 TCGA-EA-A3HU-01 1 118169043 118169043 T G FAM46C 3'UTR 0.24 TCGA-EA-A3HU-01 1 118491107 118491107 C T WDR3 Missense_Mutation p.S501F 0.21 deleterious(0) probably_damaging(0.953) TCGA-EA-A3HU-01 1 120166704 120166704 G A ZNF697 Missense_Mutation p.R88C 0.27 deleterious_low_confidence(0) benign(0.427) TCGA-EA-A3HU-01 1 120539657 120539657 C G NOTCH2 Missense_Mutation p.Q238H 0.19 tolerated(0.07) possibly_damaging(0.905) TCGA-EA-A3HU-01 1 1263751 1263751 C A GLTPD1 3'UTR 0.33 TCGA-EA-A3HU-01 1 1267287 1267287 G A TAS1R3 Missense_Mutation p.G154D 0.35 deleterious(0) probably_damaging(0.909) TCGA-EA-A3HU-01 1 14108334 14108334 G A PRDM2 Silent p.L1348L 0.19 TCGA-EA-A3HU-01 1 144892148 144892148 C T PDE4DIP Intron 0.08 TCGA-EA-A3HU-01 1 144904697 144904697 C T PDE4DIP Missense_Mutation p.R872Q 0.16 tolerated(0.16) possibly_damaging(0.566) TCGA-EA-A3HU-01 1 147097794 147097794 C G BCL9 3'UTR 0.21 TCGA-EA-A3HU-01 1 147097951 147097951 A T BCL9 3'UTR 0.22 TCGA-EA-A3HU-01 1 149875872 149875872 C - SV2A 3'UTR 0.21 TCGA-EA-A3HU-01 1 150599624 150599624 T G ENSA Intron 0.29 TCGA-EA-A3HU-01 1 150599625 150599625 C A ENSA Intron 0.29 TCGA-EA-A3HU-01 1 150783531 150783531 G A ARNT 3'UTR 0.20 TCGA-EA-A3HU-01 1 151131683 151131683 G C TNFAIP8L2 Missense_Mutation p.K170N 0.16 deleterious(0.03) benign(0.196) TCGA-EA-A3HU-01 1 151171459 151171460 - G PIP5K1A 5'UTR 0.14 TCGA-EA-A3HU-01 1 151263277 151263277 C T ZNF687 Silent p.G1102G 0.35 TCGA-EA-A3HU-01 1 151400770 151400770 C T POGZ Missense_Mutation p.V230I 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-EA-A3HU-01 1 151774280 151774280 G A LINGO4 Missense_Mutation p.R301W 0.25 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HU-01 1 151785499 151785499 G A RORC Silent p.F403F 0.34 TCGA-EA-A3HU-01 1 152059991 152059991 T - TCHHL1 Frame_Shift_Del p.N56Ifs*5 0.17 TCGA-EA-A3HU-01 1 153661549 153661549 G T NPR1 Missense_Mutation p.E846D 0.19 deleterious(0) probably_damaging(0.986) TCGA-EA-A3HU-01 1 153665869 153665869 G A NPR1 Silent p.R1055R 0.17 TCGA-EA-A3HU-01 1 154178094 154178094 T C C1orf189 Silent p.G18G 0.24 TCGA-EA-A3HU-01 1 154897571 154897571 C G PMVK 3'UTR 0.21 TCGA-EA-A3HU-01 1 155238500 155238500 T A CLK2 Silent p.R161R 0.25 TCGA-EA-A3HU-01 1 155823435 155823435 G A GON4L Missense_Mutation p.S46L 0.25 deleterious_low_confidence(0) benign(0.007) TCGA-EA-A3HU-01 1 156146901 156146901 G A SEMA4A 3'UTR 0.33 TCGA-EA-A3HU-01 1 156236369 156236369 G A SMG5 Silent p.G406G 0.26 TCGA-EA-A3HU-01 1 156288730 156288730 G A CCT3 Missense_Mutation p.R230W 0.13 deleterious(0) benign(0.019) TCGA-EA-A3HU-01 1 156901741 156901741 C T LRRC71 Missense_Mutation p.L455F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 1 157067741 157067741 C T ETV3L Missense_Mutation p.E176K 0.25 deleterious(0.01) benign(0.041) TCGA-EA-A3HU-01 1 157559012 157559012 G A FCRL4 Missense_Mutation p.R97C 0.33 tolerated(0.1) benign(0.417) TCGA-EA-A3HU-01 1 157769850 157769850 G T FCRL1 Silent p.L343L 0.22 TCGA-EA-A3HU-01 1 157805798 157805798 C T CD5L Missense_Mutation p.G68E 0.25 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HU-01 1 158065120 158065120 T G KIRREL 3'UTR 0.44 TCGA-EA-A3HU-01 1 158606460 158606460 C - SPTA1 Frame_Shift_Del p.E1761Sfs*19 0.21 TCGA-EA-A3HU-01 1 159897081 159897081 G - IGSF9 3'UTR 0.15 TCGA-EA-A3HU-01 1 160801171 160801171 C T CD244 Missense_Mutation p.R360H 0.14 deleterious(0) probably_damaging(0.983) TCGA-EA-A3HU-01 1 160970817 160970817 C G F11R Missense_Mutation p.K78N 0.17 deleterious(0.01) possibly_damaging(0.893) TCGA-EA-A3HU-01 1 161183875 161183875 T - NDUFS2 Intron 0.22 TCGA-EA-A3HU-01 1 16266841 16266841 C T SPEN 3'UTR 0.28 TCGA-EA-A3HU-01 1 16349179 16349179 G - CLCNKA Frame_Shift_Del p.G23Afs*17 0.22 TCGA-EA-A3HU-01 1 1636376 1636376 G C CDK11A Silent p.L475L 0.45 TCGA-EA-A3HU-01 1 165172038 165172038 G A LMX1A 3'UTR 0.38 TCGA-EA-A3HU-01 1 166581802 166581802 G C FMO9P RNA 0.24 TCGA-EA-A3HU-01 1 167341173 167341173 C T POU2F1 Missense_Mutation p.S101L 0.20 tolerated_low_confidence(0.08) unknown(0) TCGA-EA-A3HU-01 1 167487676 167487676 C T CD247 Silent p.A9A 0.15 TCGA-EA-A3HU-01 1 1693443 1693443 C T NADK Missense_Mutation p.V71M 0.21 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-EA-A3HU-01 1 169824995 169824995 C T SCYL3 Silent p.T472T 0.27 TCGA-EA-A3HU-01 1 173506101 173506101 G T SLC9C2 Nonsense_Mutation p.C545* 0.19 TCGA-EA-A3HU-01 1 173551050 173551050 A T SLC9C2 Silent p.V246V 0.18 TCGA-EA-A3HU-01 1 173638996 173638996 C T ANKRD45 5'UTR 0.22 TCGA-EA-A3HU-01 1 174769570 174769570 G A RABGAP1L Intron 0.10 TCGA-EA-A3HU-01 1 178822736 178822736 T G ANGPTL1 Missense_Mutation p.N337T 0.35 tolerated(1) benign(0.006) TCGA-EA-A3HU-01 1 17944820 17944820 C T ARHGEF10L Intron 0.40 TCGA-EA-A3HU-01 1 181706769 181706769 G T CACNA1E Silent p.L1177L 0.27 TCGA-EA-A3HU-01 1 185069364 185069364 C T RNF2 Silent p.V314V 0.17 TCGA-EA-A3HU-01 1 185130004 185130004 G C SWT1 Missense_Mutation p.E11Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-EA-A3HU-01 1 185266928 185266928 T C IVNS1ABP 3'UTR 0.42 TCGA-EA-A3HU-01 1 186062323 186062324 - A HMCN1 Frame_Shift_Ins p.Y3317Ifs*7 0.14 TCGA-EA-A3HU-01 1 186280599 186280599 G A PRG4 Missense_Mutation p.D1222N 0.25 unknown(0) TCGA-EA-A3HU-01 1 196309500 196309500 A C KCNT2 Nonsense_Mutation p.L585* 0.28 TCGA-EA-A3HU-01 1 198711006 198711006 A C PTPRC Missense_Mutation p.E804D 0.24 deleterious(0.04) probably_damaging(0.967) TCGA-EA-A3HU-01 1 200144489 200144489 A G NR5A2 3'UTR 0.43 TCGA-EA-A3HU-01 1 201030548 201030548 G C CACNA1S Missense_Mutation p.I1034M 0.19 deleterious(0.01) benign(0.133) TCGA-EA-A3HU-01 1 201038607 201038607 C T CACNA1S Missense_Mutation p.R828K 0.18 deleterious(0.03) benign(0.297) TCGA-EA-A3HU-01 1 202793011 202793011 A - RP11-480I12.4 5'UTR 0.19 TCGA-EA-A3HU-01 1 202843160 202843160 C G RABIF 3'Flank 0.23 TCGA-EA-A3HU-01 1 202880319 202880319 C G KLHL12 Missense_Mutation p.E194Q 0.25 deleterious(0) possibly_damaging(0.842) TCGA-EA-A3HU-01 1 204129706 204129706 G A REN Silent p.L158L 0.29 TCGA-EA-A3HU-01 1 204131240 204131240 A G REN Silent p.G50G 0.21 TCGA-EA-A3HU-01 1 204375080 204375080 A - PPP1R15B 3'UTR 0.39 TCGA-EA-A3HU-01 1 204944437 204944437 G A NFASC Missense_Mutation p.A533T 0.24 deleterious(0.01) benign(0.14) TCGA-EA-A3HU-01 1 205501236 205501236 C T CDK18 3'Flank 0.28 TCGA-EA-A3HU-01 1 20669102 20669102 G T VWA5B1 Nonsense_Mutation p.E771* 0.26 TCGA-EA-A3HU-01 1 207940452 207940452 C T CD46 Silent p.C256C 0.32 TCGA-EA-A3HU-01 1 20966400 20966400 G A PINK1 Missense_Mutation p.E231K 0.34 tolerated(0.09) probably_damaging(0.94) TCGA-EA-A3HU-01 1 212793751 212793751 T G ATF3 3'UTR 0.26 TCGA-EA-A3HU-01 1 213414589 213414589 C T RPS6KC1 Silent p.L590L 0.40 TCGA-EA-A3HU-01 1 214706660 214706660 C A PTPN14 Intron 0.14 TCGA-EA-A3HU-01 1 214706672 214706672 G T PTPN14 Intron 0.14 TCGA-EA-A3HU-01 1 215847796 215847796 A G USH2A Missense_Mutation p.V4486A 0.42 possibly_damaging(0.803) TCGA-EA-A3HU-01 1 215987235 215987235 G A USH2A Silent p.N3194N 0.20 TCGA-EA-A3HU-01 1 21809763 21809763 T C NBPF3 Missense_Mutation p.Y596H 0.29 deleterious(0) possibly_damaging(0.693) TCGA-EA-A3HU-01 1 22167723 22167723 C A HSPG2 Missense_Mutation p.K3128N 0.37 possibly_damaging(0.561) TCGA-EA-A3HU-01 1 22178154 22178154 G C HSPG2 Missense_Mutation p.S2348C 0.20 probably_damaging(0.992) TCGA-EA-A3HU-01 1 222846664 222846664 A T AIDA Missense_Mutation p.L233I 0.35 tolerated(0.07) possibly_damaging(0.574) TCGA-EA-A3HU-01 1 222903491 222903491 G C BROX Missense_Mutation p.E321Q 0.20 tolerated(0.05) benign(0.013) TCGA-EA-A3HU-01 1 223536672 223536672 C G SUSD4 Silent p.V32V 0.22 TCGA-EA-A3HU-01 1 223568631 223568631 T G C1orf65 Missense_Mutation p.L605R 0.24 deleterious(0) possibly_damaging(0.66) TCGA-EA-A3HU-01 1 223990389 223990389 C G TP53BP2 Intron 0.22 TCGA-EA-A3HU-01 1 226420843 226420843 C G LIN9 Missense_Mutation p.D509H 0.25 deleterious(0.02) probably_damaging(0.94) TCGA-EA-A3HU-01 1 227170711 227170711 C T ADCK3 Silent p.G352G 0.32 TCGA-EA-A3HU-01 1 228646059 228646059 G A HIST3H2BB Missense_Mutation p.E77K 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.691) TCGA-EA-A3HU-01 1 229567610 229567610 C T ACTA1 Missense_Mutation p.S283N 0.29 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-EA-A3HU-01 1 229613359 229613359 C T NUP133 Missense_Mutation p.E581K 0.23 deleterious(0) possibly_damaging(0.899) TCGA-EA-A3HU-01 1 230493034 230493034 G A PGBD5 Missense_Mutation p.A53V 0.21 tolerated(0.39) benign(0.046) TCGA-EA-A3HU-01 1 230846470 230846470 G A AGT Missense_Mutation p.L43F 0.28 tolerated(0.05) possibly_damaging(0.779) TCGA-EA-A3HU-01 1 231042464 231042464 G A TTC13 3'UTR 0.19 TCGA-EA-A3HU-01 1 231472726 231472726 A C EXOC8 Missense_Mutation p.F256V 0.23 deleterious(0) possibly_damaging(0.828) TCGA-EA-A3HU-01 1 233489616 233489616 C T MLK4 Silent p.L350L 0.26 TCGA-EA-A3HU-01 1 233750203 233750203 G A KCNK1 Missense_Mutation p.A96T 0.31 tolerated(0.36) benign(0.027) TCGA-EA-A3HU-01 1 235506539 235506540 - C GGPS1 3'UTR 0.30 TCGA-EA-A3HU-01 1 235824371 235824371 G C LYST 3'UTR 0.21 TCGA-EA-A3HU-01 1 237824116 237824116 G A RYR2 Missense_Mutation p.E2769K 0.25 probably_damaging(0.979) TCGA-EA-A3HU-01 1 237838107 237838107 C T RYR2 Missense_Mutation p.R2931C 0.22 possibly_damaging(0.517) TCGA-EA-A3HU-01 1 237935342 237935342 G T RYR2 Missense_Mutation p.G3863V 0.20 probably_damaging(0.996) TCGA-EA-A3HU-01 1 240255561 240255561 G A FMN2 Missense_Mutation p.G51E 0.53 unknown(0) TCGA-EA-A3HU-01 1 241798625 241798625 A G CHML Silent p.F148F 0.38 TCGA-EA-A3HU-01 1 241846798 241846798 T G WDR64 Missense_Mutation p.F202V 0.13 deleterious(0) possibly_damaging(0.616) TCGA-EA-A3HU-01 1 243328008 243328008 G A CEP170 Missense_Mutation p.S1085L 0.19 deleterious(0.01) benign(0.001) TCGA-EA-A3HU-01 1 244220293 244220293 T G ZBTB18 3'UTR 0.30 TCGA-EA-A3HU-01 1 244662331 244662331 G A C1orf101 Missense_Mutation p.E127K 0.19 deleterious(0) probably_damaging(0.986) TCGA-EA-A3HU-01 1 245772752 245772752 G A KIF26B Silent p.S612S 0.26 TCGA-EA-A3HU-01 1 246670379 246670379 G A SMYD3 Silent p.V47V 0.20 TCGA-EA-A3HU-01 1 248308766 248308766 C T OR2M5 Missense_Mutation p.S106L 0.27 deleterious(0.03) benign(0.063) TCGA-EA-A3HU-01 1 25254140 25254140 G A RUNX3 Missense_Mutation p.R136C 0.24 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 1 25783176 25783176 G T TMEM57 Missense_Mutation p.G169V 0.18 deleterious(0) probably_damaging(0.985) TCGA-EA-A3HU-01 1 25891673 25891673 G A LDLRAP1 Missense_Mutation p.D253N 0.33 deleterious(0) probably_damaging(0.972) TCGA-EA-A3HU-01 1 25893756 25893756 C A LDLRAP1 3'UTR 0.19 TCGA-EA-A3HU-01 1 26901292 26901292 C T RPS6KA1 3'Flank 0.25 TCGA-EA-A3HU-01 1 27683127 27683127 C T MAP3K6 Missense_Mutation p.A1160T 0.18 tolerated(0.62) benign(0.05) TCGA-EA-A3HU-01 1 27690446 27690446 T A MAP3K6 Missense_Mutation p.I276F 0.27 deleterious(0) probably_damaging(0.978) TCGA-EA-A3HU-01 1 29642524 29642524 T G PTPRU Missense_Mutation p.I1135S 0.29 deleterious(0) probably_damaging(0.911) TCGA-EA-A3HU-01 1 31898746 31898746 G A SERINC2 Missense_Mutation p.R208H 0.25 deleterious(0.01) benign(0.052) TCGA-EA-A3HU-01 1 3389974 3389974 T C ARHGEF16 Missense_Mutation p.F398S 0.21 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 1 35228131 35228131 G A GJB4 3'UTR 0.39 TCGA-EA-A3HU-01 1 36883838 36883838 C G OSCP1 Missense_Mutation p.E348Q 0.16 tolerated(0.08) possibly_damaging(0.773) TCGA-EA-A3HU-01 1 38061361 38061361 T A GNL2 Silent p.P21P 0.17 TCGA-EA-A3HU-01 1 38148083 38148083 A C C1orf109 3'UTR 0.19 TCGA-EA-A3HU-01 1 38465035 38465035 C T FHL3 Missense_Mutation p.R17H 0.24 tolerated(0.26) probably_damaging(0.924) TCGA-EA-A3HU-01 1 39753018 39753018 G A MACF1 Silent p.R528R 0.24 TCGA-EA-A3HU-01 1 39879469 39879470 - C KIAA0754 Frame_Shift_Ins p.A1044Sfs*47 0.23 TCGA-EA-A3HU-01 1 47101433 47101433 C T ATPAF1 3'UTR 0.19 TCGA-EA-A3HU-01 1 48918698 48918698 G C SPATA6 Missense_Mutation p.L53V 0.14 deleterious(0) probably_damaging(0.979) TCGA-EA-A3HU-01 1 51912772 51912772 A T EPS15 Silent p.V219V 0.35 TCGA-EA-A3HU-01 1 52305911 52305912 - T NRD1 Frame_Shift_Ins p.T206Nfs*3 0.22 TCGA-EA-A3HU-01 1 52822066 52822066 C G CC2D1B Missense_Mutation p.E649Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A3HU-01 1 57257810 57257810 C T C1orf168 Missense_Mutation p.E226K 0.31 tolerated(0.12) benign(0.187) TCGA-EA-A3HU-01 1 59041755 59041755 A G TACSTD2 3'UTR 0.47 TCGA-EA-A3HU-01 1 6101914 6101914 G C KCNAB2 5'Flank 0.20 TCGA-EA-A3HU-01 1 6159861 6159861 C T KCNAB2 3'UTR 0.20 TCGA-EA-A3HU-01 1 62365268 62365268 A G INADL Missense_Mutation p.R1049G 0.40 tolerated(0.07) probably_damaging(0.985) TCGA-EA-A3HU-01 1 63894697 63894698 AA - ALG6 Frame_Shift_Del p.K410Dfs*3 0.23 TCGA-EA-A3HU-01 1 6586036 6586036 C T NOL9 Missense_Mutation p.V663I 0.26 tolerated(0.32) benign(0.025) TCGA-EA-A3HU-01 1 75065580 75065580 G T C1orf173 Missense_Mutation p.Q509K 0.21 deleterious(0.03) benign(0.143) TCGA-EA-A3HU-01 1 75702683 75702683 A T SLC44A5 Nonsense_Mutation p.Y243* 0.24 TCGA-EA-A3HU-01 1 78958718 78958718 A G PTGFR Missense_Mutation p.E97G 0.13 tolerated(0.29) benign(0.099) TCGA-EA-A3HU-01 1 84986265 84986265 C T SPATA1 Intron 0.28 TCGA-EA-A3HU-01 1 85331733 85331733 T A LPAR3 Missense_Mutation p.D24V 0.16 tolerated(0.31) benign(0.015) TCGA-EA-A3HU-01 1 85742018 85742018 C A BCL10 Silent p.P6P 0.19 TCGA-EA-A3HU-01 1 86554876 86554876 G - COL24A1 Frame_Shift_Del p.P563Lfs*42 0.22 TCGA-EA-A3HU-01 1 86852720 86852720 A G ODF2L 5'UTR 0.29 TCGA-EA-A3HU-01 1 90401792 90401792 C A LRRC8D 3'UTR 0.14 TCGA-EA-A3HU-01 1 91182143 91182143 C T BARHL2 Missense_Mutation p.D204N 0.18 deleterious(0.03) unknown(0) TCGA-EA-A3HU-01 1 91781501 91781501 T G HFM1 Missense_Mutation p.E1004A 0.44 deleterious(0.05) benign(0.299) TCGA-EA-A3HU-01 1 92713518 92713518 A C GLMN Missense_Mutation p.I501S 0.18 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HU-01 1 98144663 98144663 A C DPYD Missense_Mutation p.F280V 0.33 deleterious(0) probably_damaging(0.954) TCGA-EA-A3HU-01 20 10032317 10032317 C T ANKEF1 Silent p.N550N 0.21 TCGA-EA-A3HU-01 20 10602039 10602039 C G SLX4IP Silent p.L161L 0.23 TCGA-EA-A3HU-01 20 10653409 10653409 G C JAG1 Silent p.L109L 0.20 TCGA-EA-A3HU-01 20 17639699 17639699 G A RRBP1 Intron 0.15 TCGA-EA-A3HU-01 20 19701772 19701772 C T SLC24A3 Silent p.C641C 0.16 TCGA-EA-A3HU-01 20 20553692 20553692 C T RALGAPA2 Missense_Mutation p.D910N 0.46 tolerated(0.08) benign(0.065) TCGA-EA-A3HU-01 20 21142657 21142657 A C RP4-777D9.2 Intron 0.25 TCGA-EA-A3HU-01 20 23334805 23334805 G A NXT1 Missense_Mutation p.A43T 0.20 deleterious(0) probably_damaging(0.942) TCGA-EA-A3HU-01 20 23969310 23969310 C T GGTLC1 5'UTR 0.28 TCGA-EA-A3HU-01 20 2464233 2464233 C T ZNF343 Silent p.T458T 0.19 TCGA-EA-A3HU-01 20 24994643 24994643 G A ACSS1 Missense_Mutation p.A469V 0.20 deleterious(0.01) probably_damaging(0.946) TCGA-EA-A3HU-01 20 2686630 2686630 C T EBF4 Missense_Mutation p.A98V 0.28 deleterious(0) benign(0.139) TCGA-EA-A3HU-01 20 30919950 30919950 G A KIF3B 3'UTR 0.28 TCGA-EA-A3HU-01 20 34327244 34327244 T C RBM39 Intron 0.17 TCGA-EA-A3HU-01 20 34844617 34844617 G A AAR2 3'UTR 0.28 TCGA-EA-A3HU-01 20 3649348 3649348 G - ADAM33 3'UTR 0.29 TCGA-EA-A3HU-01 20 3654093 3654093 G A ADAM33 Silent p.I347I 0.24 TCGA-EA-A3HU-01 20 36888751 36888751 G T KIAA1755 Intron 0.42 TCGA-EA-A3HU-01 20 36938980 36938980 G T BPI Missense_Mutation p.K158N 0.33 deleterious(0.01) possibly_damaging(0.705) TCGA-EA-A3HU-01 20 37182688 37182688 A C RALGAPB Missense_Mutation p.H1114P 0.23 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 20 377815 377815 C A TRIB3 3'UTR 0.19 TCGA-EA-A3HU-01 20 39795201 39795201 C T PLCG1 Missense_Mutation p.R696W 0.20 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 20 39832662 39832662 C A ZHX3 Missense_Mutation p.V299L 0.19 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HU-01 20 40111980 40111980 C T CHD6 Missense_Mutation p.D813N 0.24 deleterious(0.02) possibly_damaging(0.844) TCGA-EA-A3HU-01 20 41400170 41400170 G A PTPRT Nonsense_Mutation p.R197* 0.18 TCGA-EA-A3HU-01 20 42198062 42198062 A C SGK2 Missense_Mutation p.K149T 0.17 deleterious(0.01) possibly_damaging(0.905) TCGA-EA-A3HU-01 20 43378816 43378816 C T KCNK15 Silent p.C110C 0.15 TCGA-EA-A3HU-01 20 43572097 43572097 G C TOMM34 Silent p.L274L 0.40 TCGA-EA-A3HU-01 20 43623740 43623740 G A STK4 Missense_Mutation p.A179T 0.15 deleterious(0) possibly_damaging(0.786) TCGA-EA-A3HU-01 20 45004342 45004342 C - ELMO2 Frame_Shift_Del p.E299Kfs*3 0.15 TCGA-EA-A3HU-01 20 47592687 47592687 T G ARFGEF2 Missense_Mutation p.F637V 0.26 deleterious(0) benign(0.141) TCGA-EA-A3HU-01 20 56082640 56082640 C G CTCFL Intron 0.21 TCGA-EA-A3HU-01 20 56823266 56823266 A C PPP4R1L Missense_Mutation p.C82G 0.21 deleterious(0) probably_damaging(0.962) TCGA-EA-A3HU-01 20 60448849 60448849 C T CDH4 Missense_Mutation p.R315W 0.23 deleterious(0.04) probably_damaging(0.956) TCGA-EA-A3HU-01 20 60581658 60581658 C T TAF4 Missense_Mutation p.A711T 0.21 possibly_damaging(0.549) TCGA-EA-A3HU-01 20 60864362 60864362 C T OSBPL2 Missense_Mutation p.R409C 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-EA-A3HU-01 20 62160943 62160943 G A PTK6 Silent p.F434F 0.25 TCGA-EA-A3HU-01 20 62192044 62192044 C T HELZ2 Missense_Mutation p.G2430S 0.27 tolerated(0.54) benign(0.242) TCGA-EA-A3HU-01 20 62195033 62195033 G A HELZ2 Silent p.H1714H 0.26 TCGA-EA-A3HU-01 20 62605743 62605743 G A SAMD10 3'UTR 0.27 TCGA-EA-A3HU-01 20 62669271 62669271 C T ZNF512B Intron 0.27 TCGA-EA-A3HU-01 20 62839109 62839109 C T MYT1 Missense_Mutation p.A187V 0.29 benign(0.002) TCGA-EA-A3HU-01 21 10996072 10996072 G A TPTE RNA 0.10 TCGA-EA-A3HU-01 21 15689804 15689804 T C ABCC13 RNA 0.11 TCGA-EA-A3HU-01 21 15746110 15746110 C T HSPA13 Missense_Mutation p.R415H 0.18 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 21 16337835 16337835 G T NRIP1 Silent p.S893S 0.15 TCGA-EA-A3HU-01 21 16339364 16339364 G A NRIP1 Missense_Mutation p.L384F 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A3HU-01 21 27142324 27142324 A T GABPA 3'UTR 0.16 TCGA-EA-A3HU-01 21 30391569 30391569 C G RWDD2B Missense_Mutation p.W10C 0.20 tolerated_low_confidence(0.06) benign(0) TCGA-EA-A3HU-01 21 31709821 31709821 C T KRTAP27-1 Missense_Mutation p.E56K 0.19 tolerated(0.06) possibly_damaging(0.735) TCGA-EA-A3HU-01 21 32491320 32491320 C A TIAM1 3'UTR 0.50 TCGA-EA-A3HU-01 21 33371553 33371553 A T HUNK 3'UTR 0.23 TCGA-EA-A3HU-01 21 33371578 33371578 C G HUNK 3'UTR 0.28 TCGA-EA-A3HU-01 21 33692922 33692922 G A URB1 Missense_Mutation p.A1838V 0.13 tolerated(0.06) benign(0.12) TCGA-EA-A3HU-01 21 34106426 34106426 G A PAXBP1 3'UTR 0.15 TCGA-EA-A3HU-01 21 34635430 34635430 G C IFNAR2 Missense_Mutation p.L391F 0.20 tolerated(0.12) benign(0.278) TCGA-EA-A3HU-01 21 34635553 34635553 G C IFNAR2 Missense_Mutation p.L432F 0.16 deleterious(0.04) benign(0.346) TCGA-EA-A3HU-01 21 35469242 35469242 T G SLC5A3 Missense_Mutation p.I582S 0.38 tolerated(0.82) benign(0) TCGA-EA-A3HU-01 21 35470686 35470686 G A SLC5A3 3'UTR 0.24 TCGA-EA-A3HU-01 21 37507410 37507410 C A CBR3 5'UTR 0.40 TCGA-EA-A3HU-01 21 38884920 38884920 T G DYRK1A 3'Flank 0.23 TCGA-EA-A3HU-01 21 39086715 39086715 C T KCNJ6 Missense_Mutation p.E249K 0.14 deleterious(0.01) possibly_damaging(0.805) TCGA-EA-A3HU-01 21 43410638 43410638 A C ZBTB21 3'UTR 0.40 TCGA-EA-A3HU-01 21 44345495 44345495 G T ERVH48-1 RNA 0.31 TCGA-EA-A3HU-01 21 45547816 45547816 G A PWP2 Missense_Mutation p.R715H 0.22 deleterious(0.04) benign(0.021) TCGA-EA-A3HU-01 21 46330647 46330647 G A ITGB2 Silent p.L17L 0.27 TCGA-EA-A3HU-01 21 46888199 46888199 C - COL18A1 Frame_Shift_Del p.P232Rfs*72 0.25 TCGA-EA-A3HU-01 22 17599289 17599289 C T CECR6 3'UTR 0.31 TCGA-EA-A3HU-01 22 19006271 19006271 T A DGCR9 RNA 0.28 TCGA-EA-A3HU-01 22 19207507 19207507 C G CLTCL1 Missense_Mutation p.E936Q 0.33 deleterious(0.01) benign(0.198) TCGA-EA-A3HU-01 22 19776198 19776198 G A GNB1L 3'UTR 0.21 TCGA-EA-A3HU-01 22 21803240 21803240 C T HIC2 3'UTR 0.21 TCGA-EA-A3HU-01 22 22985454 22985454 C T GGTLC2 5'Flank 0.20 TCGA-EA-A3HU-01 22 23223509 23223509 C T IGLV3-1 Silent p.I93I 0.26 TCGA-EA-A3HU-01 22 23465680 23465680 G A GNAZ 3'UTR 0.26 TCGA-EA-A3HU-01 22 24087086 24087086 G - ZNF70 Frame_Shift_Del p.P81Qfs*26 0.31 TCGA-EA-A3HU-01 22 24124460 24124460 G A MMP11 Missense_Mutation p.A375T 0.33 tolerated(0.63) benign(0.044) TCGA-EA-A3HU-01 22 26040572 26040572 T G ADRBK2 Missense_Mutation p.F68L 0.29 tolerated(0.16) benign(0.051) TCGA-EA-A3HU-01 22 29490296 29490296 G T KREMEN1 Missense_Mutation p.A50S 0.20 tolerated(1) benign(0.004) TCGA-EA-A3HU-01 22 31266552 31266552 C G OSBP2 Silent p.L330L 0.17 TCGA-EA-A3HU-01 22 31266626 31266626 A T OSBP2 Missense_Mutation p.E355V 0.20 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 22 31668596 31668596 C A LIMK2 Silent p.A467A 0.24 TCGA-EA-A3HU-01 22 33255735 33255735 C A TIMP3 3'UTR 0.30 TCGA-EA-A3HU-01 22 35660965 35660965 T G HMGXB4 Missense_Mutation p.I195S 0.20 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 22 36708234 36708234 C T MYH9 Missense_Mutation p.E530K 0.22 probably_damaging(0.976) TCGA-EA-A3HU-01 22 38206067 38206067 G A GCAT Missense_Mutation p.G103D 0.27 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 22 39883698 39883698 G A MGAT3 Missense_Mutation p.V116I 0.19 tolerated_low_confidence(0.39) benign(0.004) TCGA-EA-A3HU-01 22 40816970 40816970 G - MKL1 Frame_Shift_Del p.M255Wfs*82 0.20 TCGA-EA-A3HU-01 22 41537053 41537053 C T EP300 Missense_Mutation p.A627V 0.14 unknown(0) TCGA-EA-A3HU-01 22 41566525 41566525 A - EP300 Frame_Shift_Del p.M1470Cfs*26 0.20 TCGA-EA-A3HU-01 22 41633589 41633589 G A CHADL Missense_Mutation p.A496V 0.26 tolerated(0.83) benign(0.014) TCGA-EA-A3HU-01 22 41790186 41790186 G A TEF Missense_Mutation p.A188T 0.34 tolerated(0.55) benign(0.012) TCGA-EA-A3HU-01 22 42525885 42525885 G A CYP2D6 Silent p.F69F 0.25 TCGA-EA-A3HU-01 22 43213779 43213780 - T ARFGAP3 Frame_Shift_Ins p.N299Kfs*3 0.37 TCGA-EA-A3HU-01 22 44063043 44063043 G A EFCAB6 Nonsense_Mutation p.R642* 0.25 TCGA-EA-A3HU-01 22 44514992 44514992 T A PARVB Nonsense_Mutation p.Y149* 0.22 TCGA-EA-A3HU-01 22 46765644 46765644 G A CELSR1 Missense_Mutation p.S2606L 0.23 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 22 51160448 51160448 A - SHANK3 Frame_Shift_Del p.H1412Pfs*32 0.25 TCGA-EA-A3HU-01 2 101097609 101097609 C T NMS Nonsense_Mutation p.R132* 0.22 TCGA-EA-A3HU-01 2 101624268 101624268 G A TBC1D8 3'UTR 0.23 TCGA-EA-A3HU-01 2 103274408 103274408 C T SLC9A2 Silent p.V225V 0.24 TCGA-EA-A3HU-01 2 10581818 10581818 G A ODC1 Missense_Mutation p.S353F 0.19 deleterious(0) probably_damaging(0.969) TCGA-EA-A3HU-01 2 108443524 108443524 G A RGPD4 Missense_Mutation p.A19T 0.21 tolerated(0.23) possibly_damaging(0.499) TCGA-EA-A3HU-01 2 111415990 111415990 G C BUB1 Missense_Mutation p.Q505E 0.17 tolerated(0.32) probably_damaging(0.986) TCGA-EA-A3HU-01 2 111431774 111431774 A C BUB1 Missense_Mutation p.F38L 0.32 tolerated(0.93) probably_damaging(0.999) TCGA-EA-A3HU-01 2 111859633 111859633 C T ACOXL Intron 0.17 TCGA-EA-A3HU-01 2 113670647 113670647 G A IL37 Missense_Mutation p.D20N 0.24 tolerated(0.28) possibly_damaging(0.601) TCGA-EA-A3HU-01 2 113890507 113890508 - C IL1RN 3'UTR 0.31 TCGA-EA-A3HU-01 2 125281944 125281944 G A CNTNAP5 Silent p.T463T 0.27 TCGA-EA-A3HU-01 2 128479457 128479457 C G WDR33 Missense_Mutation p.E542Q 0.21 tolerated_low_confidence(0.1) unknown(0) TCGA-EA-A3HU-01 2 141108417 141108417 G A LRP1B Silent p.F3947F 0.30 TCGA-EA-A3HU-01 2 141643709 141643709 C A LRP1B Missense_Mutation p.G1321V 0.15 probably_damaging(0.953) TCGA-EA-A3HU-01 2 152266964 152266964 C T RIF1 Silent p.L9L 0.37 TCGA-EA-A3HU-01 2 152663369 152663369 G A ARL5A Missense_Mutation p.H153Y 0.17 tolerated(0.47) probably_damaging(0.995) TCGA-EA-A3HU-01 2 152695192 152695192 C T CACNB4 3'UTR 0.26 TCGA-EA-A3HU-01 2 152717265 152717265 C G CACNB4 Missense_Mutation p.K276N 0.10 deleterious(0.02) possibly_damaging(0.784) TCGA-EA-A3HU-01 2 15534390 15534390 C T NBAS Missense_Mutation p.R1073H 0.19 tolerated(0.39) benign(0.015) TCGA-EA-A3HU-01 2 15743960 15743960 C T DDX1 Silent p.G166G 0.14 TCGA-EA-A3HU-01 2 160074021 160074021 C T TANC1 Silent p.A1086A 0.21 TCGA-EA-A3HU-01 2 160176621 160176621 A C BAZ2B 3'UTR 0.25 TCGA-EA-A3HU-01 2 160310196 160310196 C T BAZ2B Missense_Mutation p.E88K 0.19 benign(0.292) TCGA-EA-A3HU-01 2 164467451 164467451 G A FIGN Silent p.G297G 0.21 TCGA-EA-A3HU-01 2 166170502 166170502 G A SCN2A Missense_Mutation p.V423M 0.24 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 2 166799846 166799846 G A TTC21B Silent p.H145H 0.20 TCGA-EA-A3HU-01 2 167056375 167056375 C A SCN9A Splice_Site p.X1581_splice 0.34 TCGA-EA-A3HU-01 2 170428293 170428295 TCT - FASTKD1 In_Frame_Del p.K82del 0.18 TCGA-EA-A3HU-01 2 171710457 171710457 C T GAD1 Silent p.Y446Y 0.41 TCGA-EA-A3HU-01 2 172945101 172945101 G A METAP1D Silent p.A325A 0.34 TCGA-EA-A3HU-01 2 172945272 172945272 C T METAP1D 3'UTR 0.38 TCGA-EA-A3HU-01 2 175201865 175201865 C T AC018470.1 Missense_Mutation p.R96H 0.11 deleterious_low_confidence(0.05) unknown(0) TCGA-EA-A3HU-01 2 178482897 178482897 G C TTC30A Missense_Mutation p.S178C 0.27 tolerated(0.18) possibly_damaging(0.489) TCGA-EA-A3HU-01 2 179402474 179402474 G A TTN Missense_Mutation p.R33154C 0.26 TCGA-EA-A3HU-01 2 179460337 179460337 G A TTN Silent p.L19248L 0.33 TCGA-EA-A3HU-01 2 179471944 179471944 T G TTN Missense_Mutation p.E17795D 0.19 TCGA-EA-A3HU-01 2 179666938 179666938 G C TTN Missense_Mutation p.N74K 0.26 TCGA-EA-A3HU-01 2 179742638 179742638 G A CCDC141 Intron 0.38 TCGA-EA-A3HU-01 2 180311328 180311328 T - ZNF385B Frame_Shift_Del p.A281Pfs*14 0.17 TCGA-EA-A3HU-01 2 182542884 182542884 T C NEUROD1 Missense_Mutation p.D235G 0.20 tolerated(0.07) probably_damaging(0.971) TCGA-EA-A3HU-01 2 187350949 187350949 G A ZC3H15 5'UTR 0.18 TCGA-EA-A3HU-01 2 187350968 187350968 G C ZC3H15 5'UTR 0.20 TCGA-EA-A3HU-01 2 189458715 189458715 G A GULP1 Missense_Mutation p.D298N 0.44 deleterious_low_confidence(0) possibly_damaging(0.704) TCGA-EA-A3HU-01 2 189460269 189460269 T G GULP1 3'UTR 0.24 TCGA-EA-A3HU-01 2 189460369 189460369 T G GULP1 3'UTR 0.25 TCGA-EA-A3HU-01 2 191555136 191555136 T G NAB1 3'UTR 0.52 TCGA-EA-A3HU-01 2 1926366 1926366 C T MYT1L Missense_Mutation p.R392Q 0.25 tolerated(0.1) probably_damaging(0.91) TCGA-EA-A3HU-01 2 19553221 19553221 G A OSR1 Missense_Mutation p.R116C 0.35 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HU-01 2 196729067 196729067 G A DNAH7 Missense_Mutation p.R2438C 0.28 deleterious(0.03) probably_damaging(0.992) TCGA-EA-A3HU-01 2 196738404 196738404 G A DNAH7 Missense_Mutation p.P2101S 0.17 tolerated(0.24) benign(0.06) TCGA-EA-A3HU-01 2 197737724 197737724 G A PGAP1 Missense_Mutation p.H527Y 0.28 deleterious(0.01) possibly_damaging(0.863) TCGA-EA-A3HU-01 2 198621238 198621238 C T BOLL Missense_Mutation p.E227K 0.20 deleterious(0) possibly_damaging(0.864) TCGA-EA-A3HU-01 2 199011716 199011716 C G PLCL1 3'UTR 0.26 TCGA-EA-A3HU-01 2 201753716 201753716 A C PPIL3 5'UTR 0.30 TCGA-EA-A3HU-01 2 202486317 202486317 A C TMEM237 3'UTR 0.27 TCGA-EA-A3HU-01 2 206265749 206265749 G T PARD3B Missense_Mutation p.K819N 0.34 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 2 210595725 210595725 G A MAP2 3'UTR 0.18 TCGA-EA-A3HU-01 2 212241485 212241485 G A ERBB4 3'UTR 0.21 TCGA-EA-A3HU-01 2 219128094 219128094 G A GPBAR1 Missense_Mutation p.R216Q 0.12 tolerated(0.78) benign(0.082) TCGA-EA-A3HU-01 2 219526252 219526252 C G BCS1L Missense_Mutation p.F148L 0.15 tolerated(0.45) benign(0.008) TCGA-EA-A3HU-01 2 220479926 220479926 G A STK11IP Missense_Mutation p.E1005K 0.26 tolerated(0.06) probably_damaging(0.988) TCGA-EA-A3HU-01 2 223065766 223065766 A G PAX3 3'UTR 0.26 TCGA-EA-A3HU-01 2 228398274 228398274 C A AGFG1 Missense_Mutation p.A299D 0.32 tolerated(0.06) benign(0.119) TCGA-EA-A3HU-01 2 228855752 228855752 G C SPHKAP Missense_Mutation p.I1641M 0.31 deleterious(0) probably_damaging(0.987) TCGA-EA-A3HU-01 2 228881750 228881750 C T SPHKAP Missense_Mutation p.V1274M 0.22 deleterious(0) probably_damaging(0.941) TCGA-EA-A3HU-01 2 230632050 230632050 C T TRIP12 3'UTR 0.16 TCGA-EA-A3HU-01 2 230672494 230672494 G A TRIP12 Missense_Mutation p.A761V 0.15 tolerated(0.57) benign(0.079) TCGA-EA-A3HU-01 2 232079546 232079546 G A ARMC9 Silent p.K60K 0.24 TCGA-EA-A3HU-01 2 233321923 233321923 C A ALPI Missense_Mutation p.A180E 0.36 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 2 234204003 234204003 G A ATG16L1 3'UTR 0.24 TCGA-EA-A3HU-01 2 234891780 234891780 G C TRPM8 Missense_Mutation p.Q891H 0.26 tolerated(1) benign(0.001) TCGA-EA-A3HU-01 2 235403512 235403512 A - ARL4C 3'UTR 0.33 TCGA-EA-A3HU-01 2 237074503 237074503 C A GBX2 3'UTR 0.45 TCGA-EA-A3HU-01 2 237074607 237074607 T G GBX2 Silent p.R333R 0.26 TCGA-EA-A3HU-01 2 237300961 237300961 A G IQCA1 Missense_Mutation p.F415L 0.20 tolerated(0.08) benign(0.043) TCGA-EA-A3HU-01 2 237300968 237300968 A T IQCA1 Silent p.S412S 0.21 TCGA-EA-A3HU-01 2 239079132 239079132 C A ILKAP 3'UTR 0.19 TCGA-EA-A3HU-01 2 240002874 240002874 G A HDAC4 Silent p.P884P 0.25 TCGA-EA-A3HU-01 2 241468827 241468827 G A ANKMY1 Silent p.L105L 0.15 TCGA-EA-A3HU-01 2 242173318 242173318 C T HDLBP Missense_Mutation p.G1069R 0.20 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 2 242350463 242350463 G A FARP2 Silent p.L142L 0.21 TCGA-EA-A3HU-01 2 24518561 24518561 T A ITSN2 Missense_Mutation p.E536V 0.16 deleterious(0) unknown(0) TCGA-EA-A3HU-01 2 25181414 25181414 A G DNAJC27 Intron 0.43 TCGA-EA-A3HU-01 2 25851118 25851118 C T DTNB Missense_Mutation p.R95H 0.21 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HU-01 2 27278920 27278920 G A AGBL5 Missense_Mutation p.V427I 0.26 tolerated(0.28) possibly_damaging(0.587) TCGA-EA-A3HU-01 2 27444186 27444186 T A CAD Missense_Mutation p.L108Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HU-01 2 27461354 27461354 C T CAD Missense_Mutation p.A1639V 0.19 deleterious(0.01) possibly_damaging(0.883) TCGA-EA-A3HU-01 2 29052078 29052078 T C SPDYA Silent p.L149L 0.32 TCGA-EA-A3HU-01 2 29498346 29498346 C A ALK Missense_Mutation p.V612F 0.24 tolerated(0.13) possibly_damaging(0.732) TCGA-EA-A3HU-01 2 31215713 31215713 C T GALNT14 Intron 0.24 TCGA-EA-A3HU-01 2 3391601 3391601 C T TRAPPC12 Silent p.S69S 0.29 TCGA-EA-A3HU-01 2 37455944 37455944 C T CEBPZ Missense_Mutation p.S131N 0.28 tolerated(0.46) benign(0.001) TCGA-EA-A3HU-01 2 40404950 40404951 TT - SLC8A1 Intron 0.20 TCGA-EA-A3HU-01 2 42558708 42558708 T - EML4 3'UTR 0.28 TCGA-EA-A3HU-01 2 43458382 43458382 G C THADA Nonsense_Mutation p.S1856* 0.34 TCGA-EA-A3HU-01 2 44190814 44190814 T A LRPPRC Missense_Mutation p.E467D 0.25 tolerated(0.21) benign(0.029) TCGA-EA-A3HU-01 2 46988028 46988028 T - SOCS5 3'UTR 0.40 TCGA-EA-A3HU-01 2 48036826 48036826 C T FBXO11 Missense_Mutation p.A787T 0.20 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 2 49195912 49195912 T G FSHR Missense_Mutation p.K260T 0.36 tolerated(0.44) benign(0.003) TCGA-EA-A3HU-01 2 50148602 50148602 A C NRXN1 3'UTR 0.30 TCGA-EA-A3HU-01 2 55077237 55077237 G A EML6 Silent p.K442K 0.37 TCGA-EA-A3HU-01 2 61439004 61439004 C G USP34 Missense_Mutation p.E2915Q 0.14 deleterious(0.01) possibly_damaging(0.893) TCGA-EA-A3HU-01 2 64211004 64211004 G T VPS54 Missense_Mutation p.P44T 0.28 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-EA-A3HU-01 2 65298779 65298779 C G CEP68 Silent p.S183S 0.14 TCGA-EA-A3HU-01 2 65919065 65919065 T A AC074391.1 RNA 0.38 TCGA-EA-A3HU-01 2 67631408 67631408 C T ETAA1 Nonsense_Mutation p.Q532* 0.31 TCGA-EA-A3HU-01 2 70454926 70454926 G T TIA1 Silent p.L113L 0.30 TCGA-EA-A3HU-01 2 71375143 71375143 T G MPHOSPH10 Missense_Mutation p.I524M 0.14 deleterious(0.02) probably_damaging(0.953) TCGA-EA-A3HU-01 2 72945400 72945400 C T EXOC6B Silent p.E167E 0.20 TCGA-EA-A3HU-01 2 73491083 73491083 C A FBXO41 Missense_Mutation p.E635D 0.23 tolerated(1) benign(0.028) TCGA-EA-A3HU-01 2 74275303 74275303 C T TET3 Silent p.S618S 0.36 TCGA-EA-A3HU-01 2 85770924 85770924 T A MAT2A 3'UTR 0.20 TCGA-EA-A3HU-01 2 86090554 86090554 G A ST3GAL5 Missense_Mutation p.S46F 0.24 tolerated_low_confidence(0.13) benign(0.006) TCGA-EA-A3HU-01 2 86718364 86718364 C T KDM3A Missense_Mutation p.S1284L 0.20 deleterious(0) possibly_damaging(0.521) TCGA-EA-A3HU-01 2 87072069 87072069 C T CD8B Missense_Mutation p.R199K 0.18 tolerated(0.21) benign(0.027) TCGA-EA-A3HU-01 2 88082561 88082561 C G RGPD2 Missense_Mutation p.E1328Q 0.26 deleterious(0) benign(0.284) TCGA-EA-A3HU-01 2 89104254 89104254 A - ANKRD36BP2 RNA 0.14 TCGA-EA-A3HU-01 2 89156874 89156874 C G IGKC Nonstop_Mutation p.*108Yext*59 0.26 TCGA-EA-A3HU-01 2 8936988 8936988 C T KIDINS220 Silent p.T337T 0.29 TCGA-EA-A3HU-01 2 89999519 89999519 T C IGKV2D-28 Silent p.D107D 0.30 TCGA-EA-A3HU-01 2 95514949 95514949 C T RNU6-1320P 5'Flank 0.05 TCGA-EA-A3HU-01 2 9613171 9613171 A - CPSF3 3'UTR 0.17 TCGA-EA-A3HU-01 2 9637283 9637283 G A ADAM17 Silent p.F581F 0.27 TCGA-EA-A3HU-01 2 96549981 96549981 C T ANKRD36C Missense_Mutation p.E96K 0.18 tolerated_low_confidence(0.59) benign(0.001) TCGA-EA-A3HU-01 2 97377743 97377743 G A LMAN2L Missense_Mutation p.S187L 0.25 tolerated(0.05) possibly_damaging(0.691) TCGA-EA-A3HU-01 2 97533520 97533520 G A SEMA4C Missense_Mutation p.S35F 0.17 tolerated(0.45) benign(0.001) TCGA-EA-A3HU-01 2 98449874 98449874 A C TMEM131 Nonsense_Mutation p.L343* 0.23 TCGA-EA-A3HU-01 2 98986443 98986443 C T CNGA3 Missense_Mutation p.A2V 0.29 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-EA-A3HU-01 2 99182207 99182207 C A INPP4A Missense_Mutation p.L758M 0.26 deleterious(0.05) probably_damaging(0.978) TCGA-EA-A3HU-01 3 100105139 100105139 T A TOMM70A Missense_Mutation p.N183I 0.15 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 3 100105146 100105146 C G TOMM70A Missense_Mutation p.E181Q 0.12 tolerated(0.15) benign(0.133) TCGA-EA-A3HU-01 3 10146175 10146175 C T FANCD2OS Missense_Mutation p.R95H 0.19 deleterious(0.02) possibly_damaging(0.537) TCGA-EA-A3HU-01 3 105420966 105420966 C T CBLB Missense_Mutation p.R644H 0.27 tolerated_low_confidence(0.21) benign(0.23) TCGA-EA-A3HU-01 3 107492169 107492169 G C BBX Missense_Mutation p.R534T 0.30 deleterious(0) benign(0.195) TCGA-EA-A3HU-01 3 108172921 108172921 G C MYH15 Missense_Mutation p.F797L 0.22 tolerated(0.45) benign(0.015) TCGA-EA-A3HU-01 3 108751642 108751642 G A MORC1 Missense_Mutation p.S497F 0.26 tolerated(0.75) benign(0.126) TCGA-EA-A3HU-01 3 109049375 109049375 G T DPPA4 Silent p.A225A 0.17 TCGA-EA-A3HU-01 3 113002407 113002407 G A BOC Missense_Mutation p.V861I 0.19 tolerated(0.07) probably_damaging(0.997) TCGA-EA-A3HU-01 3 113379988 113379988 C T KIAA2018 Missense_Mutation p.A181T 0.19 probably_damaging(0.998) TCGA-EA-A3HU-01 3 113761569 113761569 C G KIAA1407 Missense_Mutation p.L132F 0.15 tolerated(0.07) benign(0.281) TCGA-EA-A3HU-01 3 115394992 115394992 A G GAP43 Missense_Mutation p.K91E 0.18 tolerated(0.06) benign(0.274) TCGA-EA-A3HU-01 3 121206926 121206927 - T POLQ Frame_Shift_Ins p.S1618Ifs*20 0.16 TCGA-EA-A3HU-01 3 121416739 121416739 T A GOLGB1 Missense_Mutation p.E877D 0.26 benign(0.03) TCGA-EA-A3HU-01 3 121514315 121514315 C G IQCB1 Missense_Mutation p.Q325H 0.26 deleterious(0) probably_damaging(0.995) TCGA-EA-A3HU-01 3 121647918 121647918 T C SLC15A2 Silent p.T477T 0.20 TCGA-EA-A3HU-01 3 122437682 122437682 G C PARP14 Missense_Mutation p.E1562Q 0.29 tolerated(0.16) benign(0.021) TCGA-EA-A3HU-01 3 122564695 122564695 T G DIRC2 Missense_Mutation p.L307V 0.10 deleterious(0.02) possibly_damaging(0.833) TCGA-EA-A3HU-01 3 123331687 123331688 AC - MYLK 3'UTR 0.27 TCGA-EA-A3HU-01 3 125249331 125249331 C T OSBPL11 3'UTR 0.24 TCGA-EA-A3HU-01 3 126153218 126153218 G A CCDC37 Missense_Mutation p.R541H 0.20 deleterious(0.03) benign(0.189) TCGA-EA-A3HU-01 3 126157217 126157217 G A ZXDC 3'UTR 0.11 TCGA-EA-A3HU-01 3 126708574 126708574 G A PLXNA1 Missense_Mutation p.E380K 0.24 tolerated(0.06) benign(0.197) TCGA-EA-A3HU-01 3 126724067 126724067 G A PLXNA1 Silent p.A626A 0.22 TCGA-EA-A3HU-01 3 128339366 128339366 C T RPN1 Missense_Mutation p.R571H 0.21 deleterious(0.01) possibly_damaging(0.776) TCGA-EA-A3HU-01 3 131293956 131293956 A C CPNE4 Missense_Mutation p.F296V 0.16 deleterious(0) benign(0.003) TCGA-EA-A3HU-01 3 132224226 132224226 T G DNAJC13 Missense_Mutation p.F1655L 0.14 deleterious(0.01) benign(0.014) TCGA-EA-A3HU-01 3 133674026 133674026 G A SLCO2A1 Missense_Mutation p.R137C 0.21 deleterious(0.04) possibly_damaging(0.773) TCGA-EA-A3HU-01 3 133913960 133913960 T C RYK Silent p.R283R 0.15 TCGA-EA-A3HU-01 3 137484397 137484397 C T SOX14 3'Flank 0.37 TCGA-EA-A3HU-01 3 142432365 142432365 T G PLS1 3'UTR 0.20 TCGA-EA-A3HU-01 3 1424984 1424984 A C CNTN6 Missense_Mutation p.Q803H 0.40 deleterious(0.01) possibly_damaging(0.602) TCGA-EA-A3HU-01 3 142778130 142778130 A G U2SURP 3'UTR 0.29 TCGA-EA-A3HU-01 3 142778148 142778148 T C U2SURP 3'UTR 0.28 TCGA-EA-A3HU-01 3 14487300 14487300 G A SLC6A6 Missense_Mutation p.G102D 0.46 deleterious(0) probably_damaging(0.969) TCGA-EA-A3HU-01 3 147128552 147128552 G A ZIC1 Missense_Mutation p.R218H 0.07 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 3 148749313 148749313 C T HLTF 3'UTR 0.20 TCGA-EA-A3HU-01 3 149459430 149459430 G A COMMD2 Missense_Mutation p.H160Y 0.12 tolerated(0.09) benign(0.005) TCGA-EA-A3HU-01 3 149485802 149485802 G A ANKUB1 Missense_Mutation p.A216V 0.16 tolerated(1) benign(0.005) TCGA-EA-A3HU-01 3 150281369 150281369 G C EIF2A Missense_Mutation p.L120F 0.19 deleterious(0.01) benign(0.004) TCGA-EA-A3HU-01 3 150404106 150404106 A T FAM194A Missense_Mutation p.C197S 0.21 tolerated(0.67) benign(0.001) TCGA-EA-A3HU-01 3 151130966 151130966 C T MED12L Silent p.G2025G 0.21 TCGA-EA-A3HU-01 3 15452858 15452860 CTT - METTL6 In_Frame_Del p.E253del 0.28 TCGA-EA-A3HU-01 3 154859901 154859901 C A MME Missense_Mutation p.T360N 0.25 tolerated(0.78) benign(0) TCGA-EA-A3HU-01 3 155588567 155588567 C T GMPS 5'UTR 0.14 TCGA-EA-A3HU-01 3 156262168 156262168 A C SSR3 Nonsense_Mutation p.Y140* 0.11 TCGA-EA-A3HU-01 3 160968681 160968681 G A NMD3 Missense_Mutation p.A499T 0.16 deleterious(0.01) benign(0.356) TCGA-EA-A3HU-01 3 165547700 165547700 A C BCHE Silent p.T374T 0.30 TCGA-EA-A3HU-01 3 167322099 167322099 G C WDR49 Silent p.L31L 0.23 TCGA-EA-A3HU-01 3 167405449 167405449 T C PDCD10 Missense_Mutation p.D143G 0.29 tolerated(0.07) benign(0.089) TCGA-EA-A3HU-01 3 167543099 167543099 C T SERPINI1 Silent p.F407F 0.22 TCGA-EA-A3HU-01 3 170584140 170584140 A T RPL22L1 3'UTR 0.20 TCGA-EA-A3HU-01 3 171394595 171394595 C G PLD1 Silent p.R675R 0.16 TCGA-EA-A3HU-01 3 172165790 172165790 G A GHSR Silent p.S138S 0.10 TCGA-EA-A3HU-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.08 deleterious(0.02) probably_damaging(0.959) TCGA-EA-A3HU-01 3 178960907 178960907 C T KCNMB3 Missense_Mutation p.A209T 0.12 tolerated(0.07) benign(0.253) TCGA-EA-A3HU-01 3 181430346 181430346 G A SOX2 Missense_Mutation p.M66I 0.18 deleterious(0) probably_damaging(0.995) TCGA-EA-A3HU-01 3 182575731 182575731 T A ATP11B Missense_Mutation p.I306N 0.10 deleterious(0.01) probably_damaging(0.938) TCGA-EA-A3HU-01 3 183976286 183976286 C - ECE2 Intron 0.18 TCGA-EA-A3HU-01 3 184009181 184009181 C T ECE2 Missense_Mutation p.A810V 0.15 deleterious(0.01) probably_damaging(0.917) TCGA-EA-A3HU-01 3 184071119 184071119 C T CLCN2 Missense_Mutation p.M649I 0.19 tolerated(0.46) benign(0) TCGA-EA-A3HU-01 3 184294913 184294913 G A EPHB3 Silent p.S432S 0.24 TCGA-EA-A3HU-01 3 185347892 185347892 T - SENP2 3'UTR 0.20 TCGA-EA-A3HU-01 3 185407163 185407163 G A IGF2BP2 Silent p.I219I 0.15 TCGA-EA-A3HU-01 3 186917516 186917516 C T RTP1 Silent p.I150I 0.26 TCGA-EA-A3HU-01 3 190995868 190995868 G A UTS2B Silent p.F65F 0.15 TCGA-EA-A3HU-01 3 192516379 192516379 C T MB21D2 Silent p.L424L 0.09 TCGA-EA-A3HU-01 3 195508348 195508348 G A MUC4 Missense_Mutation p.S3368L 0.06 benign(0.316) TCGA-EA-A3HU-01 3 196042995 196042995 G A TCTEX1D2 Missense_Mutation p.S74L 0.24 deleterious(0) probably_damaging(0.94) TCGA-EA-A3HU-01 3 196043091 196043091 G A TCTEX1D2 Missense_Mutation p.S42F 0.17 deleterious(0.02) probably_damaging(0.924) TCGA-EA-A3HU-01 3 196386861 196386861 G A NRROS Missense_Mutation p.C116Y 0.18 tolerated(1) benign(0.009) TCGA-EA-A3HU-01 3 27417047 27417047 A C SLC4A7 3'UTR 0.38 TCGA-EA-A3HU-01 3 27473106 27473106 T C SLC4A7 Missense_Mutation p.N269S 0.35 tolerated(0.2) benign(0.016) TCGA-EA-A3HU-01 3 36756869 36756869 C G DCLK3 Missense_Mutation p.E633Q 0.24 deleterious(0.03) benign(0.081) TCGA-EA-A3HU-01 3 37055922 37055922 G A MLH1 Splice_Site p.X226_splice 0.37 TCGA-EA-A3HU-01 3 38743431 38743431 A C SCN10A Missense_Mutation p.F1519C 0.27 deleterious(0.01) benign(0.424) TCGA-EA-A3HU-01 3 40231786 40231786 C - MYRIP Frame_Shift_Del p.Q501Sfs*51 0.21 TCGA-EA-A3HU-01 3 48687949 48687949 C T CELSR3 Missense_Mutation p.V2146I 0.30 tolerated(0.31) benign(0.001) TCGA-EA-A3HU-01 3 48936376 48936376 C T SLC25A20 5'UTR 0.36 TCGA-EA-A3HU-01 3 49679983 49679983 C - BSN Frame_Shift_Del p.P307Lfs*52 0.33 TCGA-EA-A3HU-01 3 49699404 49699404 G C BSN Missense_Mutation p.E3376Q 0.38 unknown(0) TCGA-EA-A3HU-01 3 49723358 49723358 C T MST1 Silent p.T395T 0.23 TCGA-EA-A3HU-01 3 49832787 49832787 C T CDHR4 Silent p.T291T 0.39 TCGA-EA-A3HU-01 3 51452260 51452260 G C VPRBP Missense_Mutation p.L790V 0.21 tolerated(0.06) possibly_damaging(0.813) TCGA-EA-A3HU-01 3 52021613 52021613 C T ACY1 Silent p.G298G 0.42 TCGA-EA-A3HU-01 3 52291152 52291152 G A WDR82 3'UTR 0.24 TCGA-EA-A3HU-01 3 52723096 52723096 G A GNL3 Missense_Mutation p.E139K 0.23 tolerated(0.08) benign(0.117) TCGA-EA-A3HU-01 3 55052341 55052341 C T CACNA2D3 Missense_Mutation p.S995F 0.38 tolerated(0.72) benign(0) TCGA-EA-A3HU-01 3 63976453 63976453 T G ATXN7 Missense_Mutation p.Y534D 0.35 deleterious(0) probably_damaging(0.989) TCGA-EA-A3HU-01 3 70014548 70014548 T A MITF 3'UTR 0.73 TCGA-EA-A3HU-01 3 71179726 71179726 C T FOXP1 Missense_Mutation p.E37K 0.29 deleterious_low_confidence(0.02) benign(0.301) TCGA-EA-A3HU-01 3 8672598 8672598 G A SSUH2 Missense_Mutation p.P140S 0.34 deleterious(0.02) probably_damaging(1) TCGA-EA-A3HU-01 3 89457263 89457263 C A EPHA3 Missense_Mutation p.H582N 0.26 tolerated(0.1) benign(0.021) TCGA-EA-A3HU-01 3 95374193 95374193 C G MTHFD2P1 RNA 0.17 TCGA-EA-A3HU-01 3 97663960 97663960 G A MINA 3'UTR 0.19 TCGA-EA-A3HU-01 3 98539110 98539110 A G DCBLD2 Missense_Mutation p.F285L 0.25 deleterious(0) possibly_damaging(0.678) TCGA-EA-A3HU-01 4 1019054 1019055 - CA FGFRL1 Frame_Shift_Ins p.S486Tfs*95 0.39 TCGA-EA-A3HU-01 4 104068764 104068764 C T CENPE Missense_Mutation p.V1295M 0.21 benign(0.048) TCGA-EA-A3HU-01 4 104080379 104080379 C T CENPE Missense_Mutation p.E797K 0.13 possibly_damaging(0.906) TCGA-EA-A3HU-01 4 104084651 104084651 A T CENPE Nonsense_Mutation p.Y569* 0.23 TCGA-EA-A3HU-01 4 110758730 110758730 G A RRH Missense_Mutation p.R230K 0.26 tolerated(0.91) benign(0.102) TCGA-EA-A3HU-01 4 114275565 114275565 G C ANK2 Missense_Mutation p.G1931R 0.12 probably_damaging(0.962) TCGA-EA-A3HU-01 4 119554774 119554774 C A RP11-384K6.6 RNA 0.13 TCGA-EA-A3HU-01 4 120219935 120219935 C T C4orf3 Splice_Site 0.12 TCGA-EA-A3HU-01 4 1209845 1209845 G A CTBP1 Silent p.C232C 0.17 TCGA-EA-A3HU-01 4 123534062 123534062 A C IL21 Missense_Mutation p.Y128D 0.31 deleterious(0) probably_damaging(0.985) TCGA-EA-A3HU-01 4 123844350 123844350 C T SPATA5 Missense_Mutation p.S18L 0.27 tolerated_low_confidence(0.06) benign(0.005) TCGA-EA-A3HU-01 4 134072174 134072174 T G PCDH10 Missense_Mutation p.I293M 0.35 tolerated(0.06) possibly_damaging(0.701) TCGA-EA-A3HU-01 4 13610966 13610966 C T BOD1L1 Missense_Mutation p.R519Q 0.14 probably_damaging(0.913) TCGA-EA-A3HU-01 4 13616125 13616125 A C BOD1L1 Missense_Mutation p.I290S 0.14 benign(0.017) TCGA-EA-A3HU-01 4 148594246 148594246 C T PRMT10 Missense_Mutation p.V203M 0.27 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HU-01 4 15068249 15068249 T C CPEB2 3'UTR 0.30 TCGA-EA-A3HU-01 4 151177169 151177169 C G DCLK2 Intron 0.11 TCGA-EA-A3HU-01 4 152198351 152198351 G A PRSS48 Silent p.T9T 0.17 TCGA-EA-A3HU-01 4 153832103 153832103 T - ARFIP1 3'UTR 0.40 TCGA-EA-A3HU-01 4 153897850 153897850 G C FHDC1 Missense_Mutation p.R1136T 0.19 deleterious(0) benign(0.295) TCGA-EA-A3HU-01 4 15689274 15689274 T C FAM200B Missense_Mutation p.F225S 0.29 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HU-01 4 159048577 159048577 T C FAM198B Silent p.V522V 0.12 TCGA-EA-A3HU-01 4 15964094 15964094 A G FGFBP2 Missense_Mutation p.F220S 0.30 deleterious(0) possibly_damaging(0.581) TCGA-EA-A3HU-01 4 170077646 170077646 G A SH3RF1 Missense_Mutation p.P193L 0.21 deleterious(0) possibly_damaging(0.588) TCGA-EA-A3HU-01 4 176555452 176555452 T - GPM6A 3'UTR 0.45 TCGA-EA-A3HU-01 4 184241625 184241625 G C CLDN22 5'UTR 0.35 TCGA-EA-A3HU-01 4 184572285 184572285 C G RWDD4 Splice_Site p.X72_splice 0.18 TCGA-EA-A3HU-01 4 184932745 184932746 - A STOX2 Intron 0.28 TCGA-EA-A3HU-01 4 186423481 186423481 G A PDLIM3 Silent p.G354G 0.26 TCGA-EA-A3HU-01 4 189060882 189060882 G A TRIML1 Nonsense_Mutation p.W57* 0.24 TCGA-EA-A3HU-01 4 20597356 20597356 C T SLIT2 Silent p.C1073C 0.30 TCGA-EA-A3HU-01 4 20597410 20597410 C T SLIT2 Silent p.C1091C 0.21 TCGA-EA-A3HU-01 4 20620537 20620537 C T SLIT2 Missense_Mutation p.R1499W 0.16 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HU-01 4 2251066 2251066 G A MXD4 3'UTR 0.45 TCGA-EA-A3HU-01 4 24801885 24801885 G A SOD3 3'UTR 0.45 TCGA-EA-A3HU-01 4 25677956 25677956 G A SLC34A2 Missense_Mutation p.R553Q 0.30 tolerated(0.84) benign(0) TCGA-EA-A3HU-01 4 2831361 2831361 G A SH3BP2 Missense_Mutation p.G300D 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.662) TCGA-EA-A3HU-01 4 2966983 2966983 G A GRK4 Intron 0.07 TCGA-EA-A3HU-01 4 3180146 3180146 G A HTT Missense_Mutation p.A1529T 0.05 probably_damaging(0.999) TCGA-EA-A3HU-01 4 36160435 36160435 G A ARAP2 Missense_Mutation p.S890F 0.19 tolerated(0.05) possibly_damaging(0.739) TCGA-EA-A3HU-01 4 38945367 38945368 - T FAM114A1 3'UTR 0.13 TCGA-EA-A3HU-01 4 39435888 39435888 G T KLB Missense_Mutation p.W295L 0.28 tolerated(0.66) benign(0.002) TCGA-EA-A3HU-01 4 39448914 39448914 G A KLB Silent p.L856L 0.22 TCGA-EA-A3HU-01 4 41746826 41746826 G A PHOX2B 3'UTR 0.32 TCGA-EA-A3HU-01 4 47589060 47589060 A T ATP10D Missense_Mutation p.I1260F 0.25 tolerated(0.06) benign(0.004) TCGA-EA-A3HU-01 4 55964327 55964327 A T KDR Missense_Mutation p.F829Y 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-EA-A3HU-01 4 56847537 56847537 A T CEP135 Nonsense_Mutation p.K591* 0.18 TCGA-EA-A3HU-01 4 57777658 57777658 C T REST Missense_Mutation p.S285L 0.25 deleterious(0) probably_damaging(0.973) TCGA-EA-A3HU-01 4 5830265 5830265 C T CRMP1 Missense_Mutation p.R585Q 0.19 tolerated(0.11) probably_damaging(0.937) TCGA-EA-A3HU-01 4 6055602 6055602 A C JAKMIP1 Intron 0.27 TCGA-EA-A3HU-01 4 66361197 66361197 G T EPHA5 Missense_Mutation p.H325Q 0.30 tolerated(0.05) benign(0.115) TCGA-EA-A3HU-01 4 7056023 7056023 C A TADA2B Missense_Mutation p.L169M 0.14 tolerated(0.17) probably_damaging(0.94) TCGA-EA-A3HU-01 4 73985919 73985919 C G ANKRD17 Missense_Mutation p.D1329H 0.19 possibly_damaging(0.889) TCGA-EA-A3HU-01 4 77089622 77089622 C A SCARB2 Missense_Mutation p.G374V 0.26 deleterious(0) probably_damaging(0.994) TCGA-EA-A3HU-01 4 77288844 77288844 C T CCDC158 Missense_Mutation p.R478H 0.24 tolerated(0.24) possibly_damaging(0.504) TCGA-EA-A3HU-01 4 77476820 77476820 T C SHROOM3 Missense_Mutation p.V76A 0.24 deleterious(0) possibly_damaging(0.61) TCGA-EA-A3HU-01 4 78079678 78079678 T C CCNG2 Intron 0.20 TCGA-EA-A3HU-01 4 80828578 80828578 C G ANTXR2 3'UTR 0.19 TCGA-EA-A3HU-01 4 8417621 8417621 G A ACOX3 Missense_Mutation p.R84W 0.27 deleterious(0) probably_damaging(0.987) TCGA-EA-A3HU-01 4 84519210 84519211 CC T AGPAT9 Frame_Shift_Del p.P335Ffs*16 0.23 TCGA-EA-A3HU-01 4 85710969 85710969 C T WDFY3 Nonsense_Mutation p.W1193* 0.18 TCGA-EA-A3HU-01 4 89408255 89408255 C G HERC5 Missense_Mutation p.F629L 0.35 tolerated(0.09) benign(0.086) TCGA-EA-A3HU-01 4 95539295 95539295 C T PDLIM5 Missense_Mutation p.S383F 0.35 deleterious(0.01) benign(0.005) TCGA-EA-A3HU-01 4 9785188 9785188 A G DRD5 3'UTR 0.29 TCGA-EA-A3HU-01 4 9785381 9785381 A - DRD5 3'UTR 0.26 TCGA-EA-A3HU-01 5 10239358 10239358 G A FAM173B Missense_Mutation p.L43F 0.18 deleterious(0.02) benign(0.09) TCGA-EA-A3HU-01 5 102484962 102484962 T G PPIP5K2 Missense_Mutation p.V284G 0.22 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HU-01 5 102895902 102895902 A C NUDT12 Missense_Mutation p.F16L 0.40 tolerated(0.65) benign(0.029) TCGA-EA-A3HU-01 5 1074741 1074741 G A SLC12A7 Silent p.N671N 0.20 TCGA-EA-A3HU-01 5 1087130 1087130 A G SLC12A7 Missense_Mutation p.M188T 0.25 deleterious(0) possibly_damaging(0.864) TCGA-EA-A3HU-01 5 10992687 10992687 G A CTNND2 Missense_Mutation p.R1063C 0.14 deleterious(0) probably_damaging(0.99) TCGA-EA-A3HU-01 5 115327936 115327936 C T AQPEP Silent p.L408L 0.33 TCGA-EA-A3HU-01 5 118506868 118506868 T C DMXL1 Missense_Mutation p.S2128P 0.38 tolerated(0.4) benign(0.007) TCGA-EA-A3HU-01 5 123973410 123973410 A T ZNF608 3'UTR 0.29 TCGA-EA-A3HU-01 5 127449946 127449946 A T SLC12A2 Nonsense_Mutation p.R307* 0.28 TCGA-EA-A3HU-01 5 129037112 129037112 C T ADAMTS19 Nonsense_Mutation p.R990* 0.17 TCGA-EA-A3HU-01 5 131811683 131811683 C T AC116366.6 5'Flank 0.12 TCGA-EA-A3HU-01 5 132161042 132161042 G A SHROOM1 Missense_Mutation p.A264V 0.27 tolerated(0.26) benign(0.013) TCGA-EA-A3HU-01 5 135561831 135561831 A C TRPC7 Missense_Mutation p.F718C 0.25 deleterious(0.02) benign(0.438) TCGA-EA-A3HU-01 5 137464199 137464199 C T NME5 Silent p.A135A 0.17 TCGA-EA-A3HU-01 5 137803396 137803396 C T EGR1 Missense_Mutation p.R420W 0.27 deleterious(0) unknown(0) TCGA-EA-A3HU-01 5 139227293 139227293 A G NRG2 3'UTR 0.20 TCGA-EA-A3HU-01 5 140011947 140011947 C A CD14 Missense_Mutation p.G208C 0.16 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HU-01 5 140242427 140242427 G A AC005609.1 Silent p.G183G 0.25 TCGA-EA-A3HU-01 5 140515550 140515550 T A PCDHB5 Missense_Mutation p.F178L 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.601) TCGA-EA-A3HU-01 5 140557709 140557709 A C PCDHB8 Silent p.R32R 0.08 TCGA-EA-A3HU-01 5 140725511 140725511 G A PCDHGA3 Silent p.A637A 0.23 TCGA-EA-A3HU-01 5 140774212 140774212 C T PCDHGA8 Missense_Mutation p.A611V 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.866) TCGA-EA-A3HU-01 5 140784703 140784703 C A PCDHGA9 Silent p.T728T 0.28 TCGA-EA-A3HU-01 5 141017340 141017340 G A RELL2 5'UTR 0.31 TCGA-EA-A3HU-01 5 14291265 14291265 G C TRIO Missense_Mutation p.Q327H 0.21 probably_damaging(0.974) TCGA-EA-A3HU-01 5 14316834 14316834 C T TRIO Silent p.F571F 0.30 TCGA-EA-A3HU-01 5 145608539 145608539 G A RBM27 Missense_Mutation p.D112N 0.26 deleterious(0.03) benign(0.211) TCGA-EA-A3HU-01 5 1483582 1483582 C T LPCAT1 Silent p.A229A 0.29 TCGA-EA-A3HU-01 5 148899919 148899919 C T CSNK1A1 Silent p.K130K 0.26 TCGA-EA-A3HU-01 5 149781766 149781766 G T CD74 3'UTR 0.29 TCGA-EA-A3HU-01 5 150158371 150158371 C A AC010441.1 Silent p.P80P 0.35 TCGA-EA-A3HU-01 5 150175445 150175445 G A AC010441.1 3'UTR 0.23 TCGA-EA-A3HU-01 5 150275565 150275565 G A ZNF300 Silent p.T428T 0.22 TCGA-EA-A3HU-01 5 154196091 154196091 T - LARP1 3'UTR 0.87 TCGA-EA-A3HU-01 5 156917351 156917351 G A ADAM19 Missense_Mutation p.S736L 0.37 tolerated(0.35) benign(0.004) TCGA-EA-A3HU-01 5 158742733 158742733 A C IL12B 3'UTR 0.35 TCGA-EA-A3HU-01 5 160720991 160720991 T - GABRB2 3'UTR 0.14 TCGA-EA-A3HU-01 5 169697903 169697903 T - LCP2 Frame_Shift_Del p.S115Vfs*121 0.19 TCGA-EA-A3HU-01 5 171548 171548 C T PLEKHG4B Missense_Mutation p.R991C 0.19 deleterious(0) probably_damaging(0.993) TCGA-EA-A3HU-01 5 173035296 173035296 C T BOD1 Splice_Site 0.24 TCGA-EA-A3HU-01 5 176307216 176307216 G A UNC5A 3'UTR 0.27 TCGA-EA-A3HU-01 5 176687130 176687130 G C NSD1 Missense_Mutation p.E1703Q 0.19 deleterious(0.03) possibly_damaging(0.514) TCGA-EA-A3HU-01 5 179306763 179306763 C T TBC1D9B Silent p.S427S 0.20 TCGA-EA-A3HU-01 5 179674392 179674392 G C MAPK9 Intron 0.11 TCGA-EA-A3HU-01 5 180005115 180005115 G - CNOT6 3'UTR 0.23 TCGA-EA-A3HU-01 5 180057000 180057000 C T FLT4 Missense_Mutation p.E207K 0.21 tolerated(0.11) benign(0.064) TCGA-EA-A3HU-01 5 24511474 24511474 C G CDH10 Missense_Mutation p.E322Q 0.23 deleterious(0.02) benign(0.003) TCGA-EA-A3HU-01 5 31267658 31267658 G A CDH6 Silent p.K26K 0.29 TCGA-EA-A3HU-01 5 31323479 31323479 T G CDH6 3'UTR 0.50 TCGA-EA-A3HU-01 5 32354828 32354828 C T ZFR 3'UTR 0.25 TCGA-EA-A3HU-01 5 33527413 33527413 C T ADAMTS12 Missense_Mutation p.M1555I 0.18 tolerated(0.27) benign(0.026) TCGA-EA-A3HU-01 5 34915020 34915020 G A RAD1 5'UTR 0.35 TCGA-EA-A3HU-01 5 34935831 34935831 G C DNAJC21 Missense_Mutation p.E70Q 0.40 deleterious(0) probably_damaging(0.979) TCGA-EA-A3HU-01 5 434786 434786 G A AHRR Missense_Mutation p.C666Y 0.23 tolerated(0.15) benign(0.056) TCGA-EA-A3HU-01 5 43644761 43644761 C T NNT Nonsense_Mutation p.Q383* 0.17 TCGA-EA-A3HU-01 5 53751851 53751851 G A HSPB3 Missense_Mutation p.V78I 0.19 tolerated(0.11) probably_damaging(0.963) TCGA-EA-A3HU-01 5 54456009 54456009 G A GPX8 5'UTR 0.29 TCGA-EA-A3HU-01 5 56184171 56184171 C T MAP3K1 Missense_Mutation p.A1459V 0.18 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 5 60839822 60839822 G A ZSWIM6 Missense_Mutation p.R1109H 0.23 tolerated(0.08) possibly_damaging(0.535) TCGA-EA-A3HU-01 5 61876409 61876409 A T LRRC70 Missense_Mutation p.N382Y 0.19 deleterious(0.02) possibly_damaging(0.687) TCGA-EA-A3HU-01 5 75911737 75911737 C T F2RL2 3'UTR 0.15 TCGA-EA-A3HU-01 5 79030249 79030249 T G CMYA5 Missense_Mutation p.I1887M 0.33 probably_damaging(0.979) TCGA-EA-A3HU-01 5 79032670 79032670 G A CMYA5 Silent p.V2694V 0.29 TCGA-EA-A3HU-01 5 82849201 82849201 A G VCAN Missense_Mutation p.Y3171C 0.17 deleterious(0) probably_damaging(0.993) TCGA-EA-A3HU-01 5 88016980 88016980 G A MEF2C 3'UTR 0.11 TCGA-EA-A3HU-01 5 89947494 89947494 T G GPR98 Missense_Mutation p.F1121L 0.36 possibly_damaging(0.483) TCGA-EA-A3HU-01 5 89947501 89947501 G A GPR98 Missense_Mutation p.E1124K 0.39 possibly_damaging(0.636) TCGA-EA-A3HU-01 5 90124775 90124775 A C GPR98 Missense_Mutation p.E5461D 0.17 possibly_damaging(0.636) TCGA-EA-A3HU-01 5 94918715 94918715 G C ARSK Missense_Mutation p.R171T 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-EA-A3HU-01 5 95067902 95067902 C T RHOBTB3 Intron 0.31 TCGA-EA-A3HU-01 5 98236756 98236756 A C CHD1 Silent p.L206L 0.43 TCGA-EA-A3HU-01 6 100368772 100368772 A C MCHR2 3'UTR 0.30 TCGA-EA-A3HU-01 6 106546932 106546932 C T PRDM1 Intron 0.11 TCGA-EA-A3HU-01 6 107780477 107780477 G A PDSS2 Nonsense_Mutation p.Q5* 0.19 TCGA-EA-A3HU-01 6 107956596 107956596 C T SOBP Missense_Mutation p.L850F 0.14 deleterious(0.03) probably_damaging(0.974) TCGA-EA-A3HU-01 6 108191690 108191690 A C SEC63 3'UTR 0.33 TCGA-EA-A3HU-01 6 109763769 109763769 G A SMPD2 Silent p.Q144Q 0.25 TCGA-EA-A3HU-01 6 110423187 110423187 G A WASF1 Nonsense_Mutation p.Q376* 0.26 TCGA-EA-A3HU-01 6 110514391 110514391 T G CDC40 Missense_Mutation p.L66V 0.33 tolerated(0.94) benign(0.001) TCGA-EA-A3HU-01 6 110636575 110636575 C T METTL24 Missense_Mutation p.R176H 0.22 tolerated(0.14) benign(0.007) TCGA-EA-A3HU-01 6 11213753 11213753 G A NEDD9 Missense_Mutation p.H74Y 0.26 tolerated(1) benign(0.044) TCGA-EA-A3HU-01 6 117241490 117241490 C T RFX6 Silent p.L400L 0.19 TCGA-EA-A3HU-01 6 117250102 117250102 C T RFX6 Missense_Mutation p.S860L 0.19 tolerated_low_confidence(0.07) benign(0.003) TCGA-EA-A3HU-01 6 117883069 117883069 A - GOPC 3'UTR 0.42 TCGA-EA-A3HU-01 6 125404041 125404042 - A RNF217 Frame_Shift_Ins 0.22 TCGA-EA-A3HU-01 6 127611226 127611226 C T ECHDC1 Missense_Mutation p.E238K 0.31 tolerated(0.12) benign(0.128) TCGA-EA-A3HU-01 6 127794421 127794421 A C SOGA3 3'UTR 0.21 TCGA-EA-A3HU-01 6 131179308 131179308 C G EPB41L2 Missense_Mutation p.E996Q 0.24 deleterious(0) probably_damaging(0.982) TCGA-EA-A3HU-01 6 133100476 133100476 G A SLC18B1 Silent p.F242F 0.22 TCGA-EA-A3HU-01 6 13365254 13365254 G T GFOD1 Silent p.I298I 0.21 TCGA-EA-A3HU-01 6 136560676 136560676 C G MTFR2 Missense_Mutation p.R266T 0.22 deleterious(0.01) possibly_damaging(0.665) TCGA-EA-A3HU-01 6 136888803 136888803 C T MAP3K5 Missense_Mutation p.V1243I 0.26 tolerated(0.11) benign(0.001) TCGA-EA-A3HU-01 6 138656032 138656032 G A KIAA1244 Missense_Mutation p.A2017T 0.25 tolerated(0.07) benign(0.098) TCGA-EA-A3HU-01 6 139609794 139609794 G T TXLNB Silent p.G81G 0.13 TCGA-EA-A3HU-01 6 13979373 13979373 T C RNF182 3'UTR 0.16 TCGA-EA-A3HU-01 6 147887654 147887654 T - SAMD5 3'UTR 0.18 TCGA-EA-A3HU-01 6 148864862 148864862 G T SASH1 Missense_Mutation p.E752D 0.13 tolerated_low_confidence(0.08) benign(0.235) TCGA-EA-A3HU-01 6 148865568 148865568 C T SASH1 Missense_Mutation p.P988S 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EA-A3HU-01 6 148870547 148870547 G A SASH1 3'UTR 0.40 TCGA-EA-A3HU-01 6 151674287 151674287 C A AKAP12 Missense_Mutation p.S1587R 0.21 tolerated(0.12) benign(0.074) TCGA-EA-A3HU-01 6 152614828 152614828 C T SYNE1 Silent p.Q5969Q 0.25 TCGA-EA-A3HU-01 6 158923775 158923775 C T TULP4 Missense_Mutation p.P1027L 0.15 deleterious_low_confidence(0.01) benign(0.046) TCGA-EA-A3HU-01 6 159188022 159188022 C T EZR Missense_Mutation p.R562Q 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-EA-A3HU-01 6 166918048 166918048 G - RPS6KA2 Frame_Shift_Del p.A179Vfs*2 0.18 TCGA-EA-A3HU-01 6 167719471 167719471 C T UNC93A Silent p.D303D 0.17 TCGA-EA-A3HU-01 6 168069937 168069937 G A RP11-351J23.2 RNA 0.25 TCGA-EA-A3HU-01 6 168947799 168947799 A T SMOC2 Missense_Mutation p.D182V 0.23 deleterious(0) possibly_damaging(0.578) TCGA-EA-A3HU-01 6 170065626 170065626 C T WDR27 Missense_Mutation p.D247N 0.20 tolerated(0.12) benign(0.212) TCGA-EA-A3HU-01 6 17665574 17665574 T C NUP153 Missense_Mutation p.K371E 0.32 deleterious(0.01) probably_damaging(0.98) TCGA-EA-A3HU-01 6 20492297 20492297 G A E2F3 3'UTR 0.20 TCGA-EA-A3HU-01 6 25762177 25762177 A G SLC17A4 5'UTR 0.29 TCGA-EA-A3HU-01 6 26217440 26217440 A G HIST1H2AE Missense_Mutation p.I80V 0.26 tolerated_low_confidence(0.21) benign(0.002) TCGA-EA-A3HU-01 6 2623646 2623646 C T C6orf195 3'UTR 0.50 TCGA-EA-A3HU-01 6 2770393 2770393 C G WRNIP1 Missense_Mutation p.L352V 0.22 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 6 27805844 27805844 C A HIST1H2AK Nonsense_Mutation p.E92* 0.15 TCGA-EA-A3HU-01 6 27839664 27839664 C T HIST1H3I 3'UTR 0.25 TCGA-EA-A3HU-01 6 30311311 30311311 C T TRIM39 3'UTR 0.25 TCGA-EA-A3HU-01 6 31590549 31590549 C T PRRC2A 5'UTR 0.13 TCGA-EA-A3HU-01 6 31728464 31728464 C T MSH5 Intron 0.26 TCGA-EA-A3HU-01 6 31777778 31777778 G A HSPA1L 3'UTR 0.18 TCGA-EA-A3HU-01 6 31795748 31795748 C G HSPA1B Missense_Mutation p.I7M 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EA-A3HU-01 6 32169256 32169256 G A NOTCH4 Silent p.C1259C 0.12 TCGA-EA-A3HU-01 6 32729509 32729509 C G HLA-DQB2 Missense_Mutation p.E98Q 0.22 tolerated(0.19) benign(0.158) TCGA-EA-A3HU-01 6 32809936 32809936 C A PSMB8 Missense_Mutation p.S171I 0.26 deleterious(0) benign(0.327) TCGA-EA-A3HU-01 6 32948414 32948414 C T BRD2 Silent p.S810S 0.21 TCGA-EA-A3HU-01 6 33163791 33163791 A C RXRB Missense_Mutation p.I339S 0.29 deleterious(0.01) probably_damaging(0.951) TCGA-EA-A3HU-01 6 33287520 33287520 C T DAXX Missense_Mutation p.R526H 0.48 deleterious_low_confidence(0.04) benign(0.007) TCGA-EA-A3HU-01 6 36172556 36172556 C A BRPF3 Missense_Mutation p.H524N 0.53 deleterious(0.01) probably_damaging(0.996) TCGA-EA-A3HU-01 6 37619916 37619916 C T MDGA1 Missense_Mutation p.A395T 0.15 deleterious(0.04) benign(0.435) TCGA-EA-A3HU-01 6 38697749 38697749 T A DNAH8 Intron 0.41 TCGA-EA-A3HU-01 6 39159517 39159517 C T KCNK5 Missense_Mutation p.A217T 0.41 tolerated(0.36) benign(0.094) TCGA-EA-A3HU-01 6 39893501 39893501 G A MOCS1 Silent p.L113L 0.56 TCGA-EA-A3HU-01 6 41000851 41000851 G A UNC5CL Missense_Mutation p.R241C 0.53 tolerated(0.19) benign(0.001) TCGA-EA-A3HU-01 6 41002620 41002620 G C UNC5CL Nonsense_Mutation p.S65* 0.21 TCGA-EA-A3HU-01 6 41168713 41168714 - CAG TREML2 In_Frame_Ins p.L11dup 0.40 TCGA-EA-A3HU-01 6 43230635 43230635 C T TTBK1 Silent p.R511R 0.28 TCGA-EA-A3HU-01 6 44371543 44371543 C T CDC5L Intron 0.35 TCGA-EA-A3HU-01 6 46867796 46867796 C A GPR116 Missense_Mutation p.G43C 0.21 tolerated(0.05) possibly_damaging(0.625) TCGA-EA-A3HU-01 6 49665598 49665598 A C CRISP2 Missense_Mutation p.Y164D 0.20 deleterious(0) possibly_damaging(0.595) TCGA-EA-A3HU-01 6 50681676 50681676 A C TFAP2D 5'UTR 0.27 TCGA-EA-A3HU-01 6 5086825 5086825 C T PPP1R3G 3'UTR 0.47 TCGA-EA-A3HU-01 6 54208109 54208109 A - TINAG Frame_Shift_Del p.N239Ifs*18 0.30 TCGA-EA-A3HU-01 6 56420345 56420345 C T DST Silent p.T2355T 0.29 TCGA-EA-A3HU-01 6 58276057 58276058 - TTTGT LINC00680 RNA 0.23 TCGA-EA-A3HU-01 6 64423943 64423943 A T PHF3 3'UTR 0.12 TCGA-EA-A3HU-01 6 65767564 65767564 C A EYS Missense_Mutation p.A694S 0.35 deleterious(0.02) benign(0.107) TCGA-EA-A3HU-01 6 74304881 74304881 A - SLC17A5 Frame_Shift_Del p.F469Lfs*33 0.17 TCGA-EA-A3HU-01 6 76022902 76022902 G A FILIP1 Silent p.I882I 0.24 TCGA-EA-A3HU-01 6 76124534 76124534 G C FILIP1 Nonsense_Mutation p.S52* 0.23 TCGA-EA-A3HU-01 6 7727734 7727734 C G BMP6 Silent p.L182L 0.29 TCGA-EA-A3HU-01 6 7861760 7861760 G A BMP6 Missense_Mutation p.A312T 0.25 deleterious(0.05) probably_damaging(1) TCGA-EA-A3HU-01 6 82459822 82459822 C T FAM46A Missense_Mutation p.A307T 0.35 tolerated(0.05) benign(0.025) TCGA-EA-A3HU-01 6 96651276 96651276 G A FUT9 Missense_Mutation p.C82Y 0.29 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 6 97058570 97058570 C G FHL5 Missense_Mutation p.F209L 0.20 deleterious(0.03) benign(0.022) TCGA-EA-A3HU-01 6 99771499 99771499 C A FAXC Missense_Mutation p.R215L 0.30 tolerated(0.4) benign(0.008) TCGA-EA-A3HU-01 7 100674975 100674975 C T MUC17 Missense_Mutation p.S93L 0.24 benign(0.01) TCGA-EA-A3HU-01 7 102194904 102194904 G A SPDYE2 Missense_Mutation p.A87T 0.20 tolerated(0.29) benign(0.004) TCGA-EA-A3HU-01 7 107621098 107621098 C T LAMB1 Missense_Mutation p.E279K 0.20 deleterious(0.03) benign(0.084) TCGA-EA-A3HU-01 7 116199222 116199222 G A CAV1 Missense_Mutation p.E140K 0.33 tolerated(0.2) benign(0.008) TCGA-EA-A3HU-01 7 116200933 116200933 T G CAV1 3'UTR 0.22 TCGA-EA-A3HU-01 7 116544251 116544251 C T CAPZA2 Silent p.G80G 0.27 TCGA-EA-A3HU-01 7 117424398 117424398 A C CTTNBP2 Missense_Mutation p.S727A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A3HU-01 7 119915228 119915228 G A KCND2 Missense_Mutation p.S181N 0.28 tolerated(0.12) benign(0.134) TCGA-EA-A3HU-01 7 123594460 123594460 G A SPAM1 Missense_Mutation p.R279H 0.28 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 7 123672195 123672195 C G TMEM229A Missense_Mutation p.S288T 0.33 tolerated(0.1) probably_damaging(0.914) TCGA-EA-A3HU-01 7 12610016 12610016 C T SCIN 5'Flank 0.33 TCGA-EA-A3HU-01 7 12728449 12728449 A - ARL4A Frame_Shift_Del p.M192Cfs*30 0.17 TCGA-EA-A3HU-01 7 127732189 127732189 A C SND1 3'UTR 0.33 TCGA-EA-A3HU-01 7 128524104 128524105 - G KCP RNA 0.20 TCGA-EA-A3HU-01 7 128767621 128767621 C G RP11-286H14.4 RNA 0.16 TCGA-EA-A3HU-01 7 129029479 129029479 G A AHCYL2 Missense_Mutation p.M208I 0.16 deleterious(0.01) possibly_damaging(0.505) TCGA-EA-A3HU-01 7 130365827 130365827 A C TSGA13 Missense_Mutation p.F44C 0.33 deleterious(0) benign(0.052) TCGA-EA-A3HU-01 7 131872231 131872231 T C PLXNA4 Missense_Mutation p.R998G 0.20 tolerated(0.47) benign(0.006) TCGA-EA-A3HU-01 7 133622807 133622807 C G EXOC4 Missense_Mutation p.L731V 0.25 tolerated(0.16) benign(0.253) TCGA-EA-A3HU-01 7 133848242 133848242 G T LRGUK Missense_Mutation p.G297C 0.22 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 7 133881815 133881815 C T LRGUK Silent p.I501I 0.25 TCGA-EA-A3HU-01 7 135418889 135418889 T G FAM180A Missense_Mutation p.K119T 0.30 deleterious(0.04) benign(0.077) TCGA-EA-A3HU-01 7 135418976 135418976 C T FAM180A Missense_Mutation p.R90H 0.19 tolerated(0.48) benign(0.001) TCGA-EA-A3HU-01 7 136700197 136700197 C G CHRM2 Missense_Mutation p.F195L 0.11 deleterious(0) possibly_damaging(0.766) TCGA-EA-A3HU-01 7 137791973 137791973 G C AKR1D1 Intron 0.26 TCGA-EA-A3HU-01 7 138252327 138252327 G C TRIM24 Missense_Mutation p.Q544H 0.18 tolerated(0.11) probably_damaging(0.986) TCGA-EA-A3HU-01 7 139726044 139726044 T A PARP12 Missense_Mutation p.N578I 0.16 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 7 141805659 141805659 T G MGAM Missense_Mutation p.F1848V 0.24 tolerated(0.52) benign(0.055) TCGA-EA-A3HU-01 7 142206614 142206614 C T TRBV10-2 Missense_Mutation p.D81N 0.30 tolerated(0.23) benign(0.093) TCGA-EA-A3HU-01 7 142573658 142573658 C T TRPV6 Splice_Site p.X255_splice 0.26 TCGA-EA-A3HU-01 7 147075210 147075210 A C CNTNAP2 Intron 0.23 TCGA-EA-A3HU-01 7 148483659 148483659 G A CUL1 Missense_Mutation p.E439K 0.29 deleterious(0) probably_damaging(0.946) TCGA-EA-A3HU-01 7 148802620 148802620 G T ZNF425 Missense_Mutation p.R115S 0.30 tolerated(0.06) benign(0.002) TCGA-EA-A3HU-01 7 149489010 149489010 G A SSPO RNA 0.13 TCGA-EA-A3HU-01 7 150029498 150029498 C T ZBED6CL 3'UTR 0.27 TCGA-EA-A3HU-01 7 150558235 150558235 G C AOC1 Missense_Mutation p.E732Q 0.23 tolerated(0.19) benign(0.022) TCGA-EA-A3HU-01 7 150749539 150749539 C T ASIC3 Missense_Mutation p.P499S 0.28 tolerated(0.23) benign(0.091) TCGA-EA-A3HU-01 7 150814254 150814254 G C AGAP3 Missense_Mutation p.E155Q 0.19 tolerated(0.08) possibly_damaging(0.675) TCGA-EA-A3HU-01 7 150878059 150878059 G A ASB10 Silent p.G357G 0.24 TCGA-EA-A3HU-01 7 150883515 150883515 C T ASB10 Missense_Mutation p.R183H 0.20 tolerated(0.32) benign(0.009) TCGA-EA-A3HU-01 7 150920871 150920871 C G ABCF2 Missense_Mutation p.E205D 0.21 deleterious(0) possibly_damaging(0.794) TCGA-EA-A3HU-01 7 151927079 151927079 C A KMT2C Nonsense_Mutation p.G969* 0.07 TCGA-EA-A3HU-01 7 152009013 152009013 C T KMT2C Silent p.Q203Q 0.33 TCGA-EA-A3HU-01 7 152132815 152132815 G - KMT2C Frame_Shift_Del p.E20Rfs*85 0.33 TCGA-EA-A3HU-01 7 154429554 154429554 A C DPP6 Silent p.G217G 0.28 TCGA-EA-A3HU-01 7 154561192 154561192 G A DPP6 Missense_Mutation p.A317T 0.38 tolerated(1) benign(0.001) TCGA-EA-A3HU-01 7 157208765 157208765 G C DNAJB6 Missense_Mutation p.K318N 0.22 deleterious(0.01) unknown(0) TCGA-EA-A3HU-01 7 158534254 158534254 C T ESYT2 Missense_Mutation p.A737T 0.14 deleterious(0.04) probably_damaging(0.957) TCGA-EA-A3HU-01 7 1588237 1588237 G A TMEM184A Silent p.T244T 0.25 TCGA-EA-A3HU-01 7 16823582 16823582 T - TSPAN13 3'UTR 0.44 TCGA-EA-A3HU-01 7 1733361 1733361 G A AC074389.6 Silent p.S57S 0.24 TCGA-EA-A3HU-01 7 21744077 21744077 T G DNAH11 Missense_Mutation p.F2107C 0.28 probably_damaging(0.975) TCGA-EA-A3HU-01 7 2472370 2472370 G A CHST12 Silent p.A32A 0.28 TCGA-EA-A3HU-01 7 29519636 29519636 G A CHN2 Intron 0.19 TCGA-EA-A3HU-01 7 30062390 30062390 G A FKBP14 Silent p.G80G 0.29 TCGA-EA-A3HU-01 7 35050084 35050084 A T DPY19L1 Missense_Mutation p.L181I 0.12 tolerated(0.12) probably_damaging(0.951) TCGA-EA-A3HU-01 7 36456741 36456741 T A ANLN Missense_Mutation p.F525L 0.35 tolerated(0.34) benign(0.002) TCGA-EA-A3HU-01 7 4308471 4308471 C A SDK1 3'UTR 0.29 TCGA-EA-A3HU-01 7 44100682 44100682 G T DBNL 3'UTR 0.33 TCGA-EA-A3HU-01 7 44178493 44178494 - C MYL7 3'UTR 0.18 TCGA-EA-A3HU-01 7 44605535 44605535 G A DDX56 3'UTR 0.29 TCGA-EA-A3HU-01 7 44746853 44746853 G A OGDH Missense_Mutation p.D888N 0.26 tolerated(0.34) benign(0) TCGA-EA-A3HU-01 7 47520717 47520717 T G TNS3 5'UTR 0.43 TCGA-EA-A3HU-01 7 51258745 51258745 G A COBL Missense_Mutation p.R163W 0.15 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 7 53103854 53103854 C T POM121L12 Missense_Mutation p.P164S 0.23 tolerated(0.37) probably_damaging(0.932) TCGA-EA-A3HU-01 7 55468969 55468969 G T LANCL2 Nonsense_Mutation p.G261* 0.13 TCGA-EA-A3HU-01 7 55560040 55560040 G - VOPP1 Frame_Shift_Del p.P88Rfs*3 0.29 TCGA-EA-A3HU-01 7 56124052 56124052 G A CCT6A Missense_Mutation p.D187N 0.22 tolerated(0.06) benign(0.319) TCGA-EA-A3HU-01 7 590220 590220 C T PRKAR1B Silent p.L331L 0.22 TCGA-EA-A3HU-01 7 6210586 6210586 C T CYTH3 Missense_Mutation p.A196T 0.28 tolerated(0.08) benign(0.014) TCGA-EA-A3HU-01 7 75616592 75616592 G A POR 3'Flank 0.26 TCGA-EA-A3HU-01 7 7612613 7612615 AAC - MIOS In_Frame_Del p.T171del 0.31 TCGA-EA-A3HU-01 7 76908107 76908107 G A CCDC146 Silent p.K493K 0.16 TCGA-EA-A3HU-01 7 77326009 77326009 C T RSBN1L Missense_Mutation p.P75S 0.29 tolerated_low_confidence(0.14) possibly_damaging(0.803) TCGA-EA-A3HU-01 7 79082657 79082657 C T MAGI2 5'UTR 0.26 TCGA-EA-A3HU-01 7 82595784 82595784 A C PCLO Nonsense_Mutation p.L1107* 0.20 TCGA-EA-A3HU-01 7 87179273 87179273 G A ABCB1 Missense_Mutation p.T483M 0.29 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 7 90839305 90839305 C T CDK14 3'UTR 0.20 TCGA-EA-A3HU-01 7 94039761 94039761 T A COL1A2 Silent p.G373G 0.13 TCGA-EA-A3HU-01 7 94059585 94059585 A T COL1A2 Silent p.T1327T 0.38 TCGA-EA-A3HU-01 7 94295044 94295044 C A PEG10 3'UTR 0.27 TCGA-EA-A3HU-01 7 94295499 94295499 A C PEG10 3'UTR 0.21 TCGA-EA-A3HU-01 7 95214742 95214742 A T PDK4 3'UTR 0.33 TCGA-EA-A3HU-01 7 99123897 99123897 C T ZKSCAN5 Missense_Mutation p.R412W 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A3HU-01 7 99818034 99818034 T A PVRIG Missense_Mutation p.F139Y 0.23 tolerated(0.1) probably_damaging(0.916) TCGA-EA-A3HU-01 8 100796656 100796656 G A VPS13B Silent p.A2656A 0.30 TCGA-EA-A3HU-01 8 110980823 110980823 G A KCNV1 Missense_Mutation p.R333C 0.31 deleterious(0) probably_damaging(0.947) TCGA-EA-A3HU-01 8 113657418 113657418 G T CSMD3 Missense_Mutation p.T1077K 0.21 deleterious(0) possibly_damaging(0.593) TCGA-EA-A3HU-01 8 113662424 113662425 - T CSMD3 Frame_Shift_Ins p.N1053Kfs*12 0.17 TCGA-EA-A3HU-01 8 120575239 120575239 C T ENPP2 Missense_Mutation p.S812N 0.19 tolerated(0.11) benign(0.182) TCGA-EA-A3HU-01 8 120595987 120595987 C T ENPP2 Missense_Mutation p.E557K 0.36 deleterious(0) probably_damaging(0.937) TCGA-EA-A3HU-01 8 124696865 124696865 G A ANXA13 Silent p.V313V 0.16 TCGA-EA-A3HU-01 8 124826134 124826134 C A FAM91A1 3'UTR 0.24 TCGA-EA-A3HU-01 8 12586472 12586472 A T LONRF1 Missense_Mutation p.L650I 0.20 tolerated(0.26) probably_damaging(0.98) TCGA-EA-A3HU-01 8 128428403 128428403 G A POU5F1B Missense_Mutation p.E98K 0.14 deleterious(0.01) benign(0.015) TCGA-EA-A3HU-01 8 141415695 141415695 G A TRAPPC9 Missense_Mutation p.A428V 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-EA-A3HU-01 8 143746288 143746288 G C JRK RNA 0.14 TCGA-EA-A3HU-01 8 144458729 144458729 G A RHPN1 Missense_Mutation p.A71T 0.24 tolerated(0.21) probably_damaging(0.909) TCGA-EA-A3HU-01 8 144641548 144641548 G C GSDMD Missense_Mutation p.E15Q 0.39 deleterious(0) probably_damaging(0.995) TCGA-EA-A3HU-01 8 145626433 145626433 G A CPSF1 Missense_Mutation p.R142W 0.20 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 8 145659401 145659401 C T TONSL Missense_Mutation p.R1116H 0.25 tolerated(0.14) benign(0.059) TCGA-EA-A3HU-01 8 145661528 145661528 G A TONSL Missense_Mutation p.S763L 0.56 tolerated(0.36) benign(0) TCGA-EA-A3HU-01 8 145738230 145738232 CCT - RECQL4 In_Frame_Del p.E918del 0.32 TCGA-EA-A3HU-01 8 146067178 146067178 A - ZNF7 Frame_Shift_Del p.K231Sfs*59 0.25 TCGA-EA-A3HU-01 8 22478789 22478789 C T BIN3 3'UTR 0.30 TCGA-EA-A3HU-01 8 23702481 23702481 C T STC1 Silent p.L182L 0.27 TCGA-EA-A3HU-01 8 27145235 27145235 C T TRIM35 Silent p.E438E 0.19 TCGA-EA-A3HU-01 8 27277474 27277474 C T PTK2B Silent p.C89C 0.27 TCGA-EA-A3HU-01 8 28200688 28200688 G A PNOC 3'UTR 0.31 TCGA-EA-A3HU-01 8 2855580 2855580 T A CSMD1 Missense_Mutation p.Q2777L 0.25 probably_damaging(0.996) TCGA-EA-A3HU-01 8 28988140 28988140 G C KIF13B Missense_Mutation p.I995M 0.35 deleterious(0) probably_damaging(0.935) TCGA-EA-A3HU-01 8 30021674 30021676 GAG - DCTN6 In_Frame_Del p.G25del 0.41 TCGA-EA-A3HU-01 8 30916055 30916055 G - WRN Frame_Shift_Del p.R31Kfs*17 0.17 TCGA-EA-A3HU-01 8 37556239 37556239 C G ZNF703 3'UTR 0.22 TCGA-EA-A3HU-01 8 381399 381399 A - FBXO25 Frame_Shift_Del p.R67Gfs*44 0.21 TCGA-EA-A3HU-01 8 40388123 40388123 C A ZMAT4 3'UTR 0.38 TCGA-EA-A3HU-01 8 41161051 41161051 G A SFRP1 Missense_Mutation p.T184M 0.18 deleterious(0.03) benign(0.176) TCGA-EA-A3HU-01 8 41790749 41790749 C T KAT6A Silent p.P1663P 0.39 TCGA-EA-A3HU-01 8 48792096 48792096 G A PRKDC Missense_Mutation p.P1730S 0.19 benign(0.046) TCGA-EA-A3HU-01 8 55534096 55534096 C T RP1 Silent p.V190V 0.20 TCGA-EA-A3HU-01 8 56437474 56437474 C T XKR4 3'UTR 0.30 TCGA-EA-A3HU-01 8 59061075 59061075 T C FAM110B 3'UTR 0.24 TCGA-EA-A3HU-01 8 61750671 61750671 C G CHD7 Missense_Mutation p.L1464V 0.21 probably_damaging(0.984) TCGA-EA-A3HU-01 8 65527718 65527718 G A CYP7B1 Missense_Mutation p.L308F 0.15 deleterious(0.01) probably_damaging(0.971) TCGA-EA-A3HU-01 8 67089023 67089023 A C CRH 3'UTR 0.33 TCGA-EA-A3HU-01 8 6728244 6728244 G C DEFB1 Missense_Mutation p.Q56E 0.36 tolerated(1) possibly_damaging(0.523) TCGA-EA-A3HU-01 8 68130069 68130069 C T ARFGEF1 Missense_Mutation p.D1521N 0.24 tolerated(0.24) benign(0.137) TCGA-EA-A3HU-01 8 70571988 70571988 G A SULF1 3'UTR 0.54 TCGA-EA-A3HU-01 8 71520480 71520480 C T TRAM1 5'UTR 0.19 TCGA-EA-A3HU-01 8 75761495 75761495 C T PI15 3'UTR 0.19 TCGA-EA-A3HU-01 8 75925233 75925233 C T CRISPLD1 Silent p.G162G 0.31 TCGA-EA-A3HU-01 8 91962037 91962037 T G NECAB1 Missense_Mutation p.I288S 0.25 deleterious(0) possibly_damaging(0.762) TCGA-EA-A3HU-01 8 94936996 94936997 AT - PDP1 3'UTR 0.32 TCGA-EA-A3HU-01 8 95508692 95508692 T A KIAA1429 Missense_Mutation p.D1416V 0.24 deleterious(0.03) benign(0.018) TCGA-EA-A3HU-01 8 95869137 95869137 C A INTS8 Missense_Mutation p.Q629K 0.24 tolerated(0.91) benign(0.001) TCGA-EA-A3HU-01 8 98289174 98289174 C T TSPYL5 Missense_Mutation p.R300H 0.23 tolerated(0.05) probably_damaging(0.931) TCGA-EA-A3HU-01 9 100056251 100056251 T A CCDC180 5'UTR 0.16 TCGA-EA-A3HU-01 9 100315615 100315615 G A TMOD1 Silent p.V110V 0.17 TCGA-EA-A3HU-01 9 100407993 100407993 C T NCBP1 Missense_Mutation p.A197V 0.23 tolerated(0.32) benign(0.004) TCGA-EA-A3HU-01 9 100423313 100423313 G A NCBP1 Silent p.L521L 0.19 TCGA-EA-A3HU-01 9 101056174 101056174 C A GABBR2 Missense_Mutation p.K851N 0.16 deleterious_low_confidence(0.02) benign(0.444) TCGA-EA-A3HU-01 9 102628945 102628945 C T NR4A3 3'UTR 0.32 TCGA-EA-A3HU-01 9 104123158 104123158 T G BAAT 3'UTR 0.31 TCGA-EA-A3HU-01 9 109701337 109701337 C T ZNF462 Missense_Mutation p.H2126Y 0.28 benign(0.249) TCGA-EA-A3HU-01 9 111617807 111617807 C T ACTL7B Missense_Mutation p.R135H 0.27 tolerated(0.39) benign(0.001) TCGA-EA-A3HU-01 9 111936679 111936679 T G EPB41L4B 3'UTR 0.20 TCGA-EA-A3HU-01 9 113217900 113217900 A C SVEP1 Missense_Mutation p.F1253V 0.33 probably_damaging(0.999) TCGA-EA-A3HU-01 9 113550016 113550016 A C MUSK Missense_Mutation p.K609Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-EA-A3HU-01 9 114089963 114089963 A T OR2K2 Missense_Mutation p.Y251N 0.22 deleterious(0) probably_damaging(0.991) TCGA-EA-A3HU-01 9 114490154 114490154 C T C9orf84 Silent p.K467K 0.26 TCGA-EA-A3HU-01 9 114990700 114990700 A G PTBP3 Silent p.N403N 0.33 TCGA-EA-A3HU-01 9 115181148 115181148 A T HSDL2 Missense_Mutation p.I170F 0.35 deleterious(0) probably_damaging(0.935) TCGA-EA-A3HU-01 9 116153129 116153129 G T ALAD Missense_Mutation p.L116M 0.21 deleterious(0.01) probably_damaging(0.951) TCGA-EA-A3HU-01 9 116854204 116854204 G A KIF12 Silent p.G493G 0.26 TCGA-EA-A3HU-01 9 117168632 117168632 C T DFNB31 Intron 0.32 TCGA-EA-A3HU-01 9 121930116 121930116 C T BRINP1 Missense_Mutation p.R511H 0.33 deleterious(0.05) probably_damaging(0.964) TCGA-EA-A3HU-01 9 124936843 124936843 G A MORN5 Missense_Mutation p.G126S 0.28 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 9 124989703 124989703 G A LHX6 Silent p.T47T 0.29 TCGA-EA-A3HU-01 9 125377830 125377830 C T OR1Q1 Missense_Mutation p.R272C 0.21 tolerated(0.06) probably_damaging(0.95) TCGA-EA-A3HU-01 9 125797555 125797555 G T GPR21 Missense_Mutation p.G237V 0.27 tolerated(0.28) benign(0.008) TCGA-EA-A3HU-01 9 126143023 126143023 C T DENND1A 3'UTR 0.35 TCGA-EA-A3HU-01 9 127619875 127619875 G A WDR38 Missense_Mutation p.R304H 0.23 tolerated(0.58) benign(0) TCGA-EA-A3HU-01 9 129595499 129595499 C T ZBTB43 Silent p.I237I 0.17 TCGA-EA-A3HU-01 9 131004564 131004564 C A DNM1 Silent p.G537G 0.32 TCGA-EA-A3HU-01 9 131351141 131351141 C G SPTAN1 Silent p.L975L 0.06 TCGA-EA-A3HU-01 9 131457173 131457173 T G SET 3'UTR 0.19 TCGA-EA-A3HU-01 9 13205089 13205089 C T MPDZ Missense_Mutation p.E498K 0.14 tolerated(0.43) benign(0.036) TCGA-EA-A3HU-01 9 132502013 132502013 T C PTGES Silent p.A112A 0.24 TCGA-EA-A3HU-01 9 132572097 132572097 C T TOR1B 3'UTR 0.40 TCGA-EA-A3HU-01 9 132890943 132890943 G C GPR107 Missense_Mutation p.V537L 0.27 deleterious(0.01) benign(0.091) TCGA-EA-A3HU-01 9 133352327 133352327 C G ASS1 Missense_Mutation p.L223V 0.15 tolerated(0.27) benign(0.062) TCGA-EA-A3HU-01 9 133352341 133352341 C T ASS1 Silent p.F227F 0.23 TCGA-EA-A3HU-01 9 135505740 135505740 G A DDX31 Silent p.T619T 0.33 TCGA-EA-A3HU-01 9 136265575 136265575 G A C9orf96 Silent p.V372V 0.24 TCGA-EA-A3HU-01 9 136310925 136310925 G A ADAMTS13 Missense_Mutation p.V906I 0.44 tolerated(0.07) benign(0.109) TCGA-EA-A3HU-01 9 138376788 138376788 G C PPP1R26 Missense_Mutation p.K144N 0.10 deleterious(0) possibly_damaging(0.895) TCGA-EA-A3HU-01 9 139276738 139276738 G C SNAPC4 Silent p.L678L 0.24 TCGA-EA-A3HU-01 9 139847361 139847361 C T LCN12 Silent p.F44F 0.28 TCGA-EA-A3HU-01 9 139994210 139994210 C T MAN1B1 Missense_Mutation p.R265C 0.25 tolerated(0.05) benign(0.049) TCGA-EA-A3HU-01 9 139994326 139994326 G C MAN1B1 Silent p.L303L 0.23 TCGA-EA-A3HU-01 9 140327670 140327670 G - NOXA1 Frame_Shift_Del p.P291Lfs*24 0.60 TCGA-EA-A3HU-01 9 140396175 140396175 G A PNPLA7 Missense_Mutation p.S493L 0.31 deleterious(0.01) benign(0.001) TCGA-EA-A3HU-01 9 140707511 140707511 C T EHMT1 Missense_Mutation p.T974M 0.29 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HU-01 9 140730423 140730423 T - EHMT1 3'UTR 0.33 TCGA-EA-A3HU-01 9 14313759 14313759 G A NFIB 5'Flank 0.26 TCGA-EA-A3HU-01 9 15727996 15727996 G C CCDC171 Missense_Mutation p.D608H 0.15 deleterious(0) probably_damaging(0.984) TCGA-EA-A3HU-01 9 18776791 18776791 C T ADAMTSL1 Missense_Mutation p.P855L 0.29 tolerated(0.13) benign(0.009) TCGA-EA-A3HU-01 9 18927918 18927918 C A FAM154A 3'UTR 0.30 TCGA-EA-A3HU-01 9 19126395 19126395 C T PLIN2 Silent p.P10P 0.23 TCGA-EA-A3HU-01 9 27548004 27548004 A C C9orf72 3'UTR 0.33 TCGA-EA-A3HU-01 9 32785772 32785772 C T TMEM215 3'UTR 0.36 TCGA-EA-A3HU-01 9 32787268 32787268 T G TMEM215 3'UTR 0.26 TCGA-EA-A3HU-01 9 33676355 33676355 C T PTENP1 RNA 0.25 TCGA-EA-A3HU-01 9 34724853 34724853 G A FAM205A Missense_Mutation p.A795V 0.20 deleterious(0.04) benign(0.008) TCGA-EA-A3HU-01 9 35056689 35056689 A G VCP 3'UTR 0.22 TCGA-EA-A3HU-01 9 35749827 35749827 C T RGP1 Silent p.T25T 0.26 TCGA-EA-A3HU-01 9 35870178 35870178 G A OR13J1 Missense_Mutation p.T74M 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A3HU-01 9 36085308 36085308 G A RECK Intron 0.22 TCGA-EA-A3HU-01 9 37888412 37888412 C T SLC25A51 Missense_Mutation p.A46T 0.23 tolerated(0.4) benign(0.005) TCGA-EA-A3HU-01 9 39118001 39118001 A C CNTNAP3 Intron 0.25 TCGA-EA-A3HU-01 9 40771877 40771877 G C ZNF658 3'UTR 0.42 TCGA-EA-A3HU-01 9 6328621 6328621 C G TPD52L3 Missense_Mutation p.S9C 0.30 deleterious(0.03) possibly_damaging(0.873) TCGA-EA-A3HU-01 9 6497316 6497316 A G UHRF2 Missense_Mutation p.K575E 0.25 deleterious(0.04) probably_damaging(0.978) TCGA-EA-A3HU-01 9 71098931 71098931 G T PGM5 Silent p.V482V 0.12 TCGA-EA-A3HU-01 9 74481116 74481117 - T ABHD17B Intron 0.12 TCGA-EA-A3HU-01 9 74587625 74587625 A - C9orf85 Frame_Shift_Del p.I116* 0.18 TCGA-EA-A3HU-01 9 74834422 74834422 C T GDA Silent p.N202N 0.19 TCGA-EA-A3HU-01 9 75420362 75420362 T G TMC1 Missense_Mutation p.F544C 0.19 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 9 78855546 78855546 C T PCSK5 Missense_Mutation p.P1030S 0.22 tolerated(0.11) benign(0.025) TCGA-EA-A3HU-01 9 78973574 78973574 A T PCSK5 Silent p.P1773P 0.27 TCGA-EA-A3HU-01 9 8316781 8316781 C A PTPRD 3'UTR 0.18 TCGA-EA-A3HU-01 9 8341854 8341854 C A PTPRD Missense_Mutation p.V1596F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 9 8389298 8389298 C G PTPRD Missense_Mutation p.W1440C 0.27 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 9 84532636 84532636 A C SPATA31D5P RNA 0.26 TCGA-EA-A3HU-01 9 86297962 86297962 G A UBQLN1 Nonsense_Mutation p.Q118* 0.27 TCGA-EA-A3HU-01 9 87284221 87284221 G A NTRK2 5'UTR 0.16 TCGA-EA-A3HU-01 9 88161924 88161924 G C AGTPBP1 3'UTR 0.22 TCGA-EA-A3HU-01 9 88692354 88692354 G A GOLM1 Silent p.S94S 0.25 TCGA-EA-A3HU-01 9 91609245 91609245 G A C9orf47 3'UTR 0.25 TCGA-EA-A3HU-01 9 95277023 95277023 C T ECM2 Missense_Mutation p.R315H 0.16 tolerated(0.19) benign(0.006) TCGA-EA-A3HU-01 9 96060244 96060244 G A WNK2 Missense_Mutation p.A1977T 0.18 unknown(0) TCGA-EA-A3HU-01 9 96212837 96212837 C A FAM120AOS Missense_Mutation p.G203V 0.21 tolerated_low_confidence(0.34) probably_damaging(0.979) TCGA-EA-A3HU-01 9 96328181 96328181 C T FAM120A 3'UTR 0.11 TCGA-EA-A3HU-01 9 968024 968024 C T DMRT1 Missense_Mutation p.S336F 0.18 deleterious(0.02) probably_damaging(0.959) TCGA-EA-A3HU-01 X 100088349 100088349 G A CSTF2 Missense_Mutation p.R463K 0.09 deleterious(0.01) possibly_damaging(0.815) TCGA-EA-A3HU-01 X 101138741 101138741 T C ZMAT1 Missense_Mutation p.E553G 0.27 deleterious(0.02) probably_damaging(0.972) TCGA-EA-A3HU-01 X 101396310 101396310 A C TCEAL6 5'UTR 0.20 TCGA-EA-A3HU-01 X 101620151 101620151 G A NXF2B Missense_Mutation p.S432L 0.16 tolerated(0.17) benign(0.006) TCGA-EA-A3HU-01 X 102004336 102004336 A G BHLHB9 Missense_Mutation p.D138G 0.13 tolerated(0.06) benign(0.003) TCGA-EA-A3HU-01 X 102508468 102508468 A C TCEAL8 3'UTR 0.18 TCGA-EA-A3HU-01 X 103268214 103268214 G A H2BFWT Missense_Mutation p.P7S 0.25 tolerated_low_confidence(0.4) benign(0.003) TCGA-EA-A3HU-01 X 105855495 105855495 C - CXorf57 Frame_Shift_Del p.S64Rfs*6 0.25 TCGA-EA-A3HU-01 X 106845537 106845537 G A FRMPD3 Missense_Mutation p.R1456K 0.11 tolerated_low_confidence(0.53) benign(0.005) TCGA-EA-A3HU-01 X 106959164 106959164 C T TSC22D3 Missense_Mutation p.V113M 0.23 deleterious(0.04) probably_damaging(0.917) TCGA-EA-A3HU-01 X 107430450 107430450 T - COL4A6 Frame_Shift_Del p.G611Afs*127 0.20 TCGA-EA-A3HU-01 X 107978807 107978807 C G IRS4 Silent p.L256L 0.14 TCGA-EA-A3HU-01 X 108885181 108885181 G T ACSL4 3'UTR 0.19 TCGA-EA-A3HU-01 X 108911444 108911444 C A ACSL4 Nonsense_Mutation p.G442* 0.13 TCGA-EA-A3HU-01 X 109764478 109764478 C A TDGF1P3 RNA 0.21 TCGA-EA-A3HU-01 X 110494902 110494902 C T CAPN6 Missense_Mutation p.M256I 0.22 tolerated(0.35) benign(0.322) TCGA-EA-A3HU-01 X 110537083 110537083 G A DCX 3'UTR 0.13 TCGA-EA-A3HU-01 X 110961480 110961480 T C ALG13 Missense_Mutation p.Y410H 0.24 tolerated(0.5) possibly_damaging(0.459) TCGA-EA-A3HU-01 X 110964869 110964869 G T ALG13 Missense_Mutation p.K455N 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-EA-A3HU-01 X 112024238 112024238 C T AMOT Silent p.R783R 0.14 TCGA-EA-A3HU-01 X 112058694 112058694 A G AMOT Silent p.F428F 0.20 TCGA-EA-A3HU-01 X 114414315 114414315 C T LRCH2 Splice_Site p.X208_splice 0.16 TCGA-EA-A3HU-01 X 114424964 114424964 G A RBMXL3 Silent p.P320P 0.17 TCGA-EA-A3HU-01 X 117054302 117054302 A C KLHL13 Missense_Mutation p.L94R 0.25 deleterious(0) possibly_damaging(0.656) TCGA-EA-A3HU-01 X 117543538 117543538 A - WDR44 Frame_Shift_Del p.N542Mfs*11 0.22 TCGA-EA-A3HU-01 X 117960513 117960513 G A ZCCHC12 3'UTR 0.11 TCGA-EA-A3HU-01 X 118718070 118718070 A C UBE2A 3'UTR 0.16 TCGA-EA-A3HU-01 X 12157009 12157009 G A FRMPD4 5'UTR 0.20 TCGA-EA-A3HU-01 X 122318207 122318207 G A GRIA3 5'UTR 0.33 TCGA-EA-A3HU-01 X 123518301 123518301 G A TENM1 Silent p.Y2160Y 0.23 TCGA-EA-A3HU-01 X 125299273 125299273 G A DCAF12L2 Missense_Mutation p.S212F 0.23 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 X 125955255 125955255 T C CXorf64 Missense_Mutation p.S212P 0.27 deleterious(0.05) probably_damaging(0.934) TCGA-EA-A3HU-01 X 128615115 128615115 T C SMARCA1 Silent p.A755A 0.17 TCGA-EA-A3HU-01 X 128914080 128914080 C T SASH3 Missense_Mutation p.R3C 0.48 deleterious(0) possibly_damaging(0.877) TCGA-EA-A3HU-01 X 129042055 129042055 G C UTP14A Missense_Mutation p.R41T 0.25 deleterious(0) possibly_damaging(0.765) TCGA-EA-A3HU-01 X 129306124 129306124 C A RAB33A Missense_Mutation p.Q30K 0.16 tolerated(0.95) benign(0.005) TCGA-EA-A3HU-01 X 131762895 131762895 G A HS6ST2 Missense_Mutation p.R432C 0.16 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 X 133941423 133941423 C T FAM122C 5'UTR 0.21 TCGA-EA-A3HU-01 X 134185564 134185564 C T FAM127B 3'UTR 0.23 TCGA-EA-A3HU-01 X 135056076 135056076 C T MMGT1 5'UTR 0.12 TCGA-EA-A3HU-01 X 135095119 135095119 C T SLC9A6 Silent p.F351F 0.29 TCGA-EA-A3HU-01 X 136653529 136653529 A T ZIC3 3'UTR 0.16 TCGA-EA-A3HU-01 X 138643724 138643724 C T F9 Nonsense_Mutation p.R294* 0.46 TCGA-EA-A3HU-01 X 140969244 140969244 T C MAGEC3 Silent p.L191L 0.21 TCGA-EA-A3HU-01 X 140995697 140995697 C T MAGEC1 Missense_Mutation p.S836F 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-EA-A3HU-01 X 148074703 148074703 A T AFF2 3'UTR 0.30 TCGA-EA-A3HU-01 X 148568846 148568846 T G IDS Intron 0.21 TCGA-EA-A3HU-01 X 148585784 148585784 C T IDS Missense_Mutation p.R48H 0.22 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 X 149680843 149680843 C A MAMLD1 Missense_Mutation p.Q833K 0.17 tolerated(0.35) benign(0) TCGA-EA-A3HU-01 X 150157345 150157345 T G HMGB3 3'UTR 0.15 TCGA-EA-A3HU-01 X 150912869 150912869 C T CNGA2 Missense_Mutation p.R632C 0.14 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 X 151821378 151821378 C T GABRQ Silent p.G511G 0.11 TCGA-EA-A3HU-01 X 152481601 152481601 T G MAGEA1 3'UTR 0.38 TCGA-EA-A3HU-01 X 153138085 153138085 G C L1CAM Missense_Mutation p.I53M 0.18 deleterious(0) probably_damaging(0.918) TCGA-EA-A3HU-01 X 153197406 153197406 C A NAA10 Intron 0.18 TCGA-EA-A3HU-01 X 153220407 153220407 C A HCFC1 Missense_Mutation p.R1148L 0.19 deleterious_low_confidence(0.01) benign(0.055) TCGA-EA-A3HU-01 X 153223487 153223487 C T HCFC1 Missense_Mutation p.G673S 0.15 tolerated(0.14) probably_damaging(0.997) TCGA-EA-A3HU-01 X 153248009 153248009 G A TMEM187 Missense_Mutation p.A166T 0.22 tolerated(0.12) benign(0.018) TCGA-EA-A3HU-01 X 153281930 153281930 C T IRAK1 Silent p.T398T 0.13 TCGA-EA-A3HU-01 X 153288904 153288904 A T IRAK1 5'Flank 0.10 TCGA-EA-A3HU-01 X 153662561 153662561 G A ATP6AP1 Missense_Mutation p.R231H 0.13 deleterious(0.01) probably_damaging(1) TCGA-EA-A3HU-01 X 153694577 153694577 C A PLXNA3 Missense_Mutation p.D921E 0.16 tolerated(0.99) benign(0.083) TCGA-EA-A3HU-01 X 153697028 153697028 A G PLXNA3 Missense_Mutation p.M1415V 0.24 deleterious(0.01) possibly_damaging(0.469) TCGA-EA-A3HU-01 X 154066024 154066024 A G F8 Missense_Mutation p.F2302L 0.16 deleterious(0) probably_damaging(1) TCGA-EA-A3HU-01 X 155005537 155005537 T G SPRY3 3'UTR 0.16 TCGA-EA-A3HU-01 X 17095395 17095395 T G REPS2 Missense_Mutation p.S461A 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-EA-A3HU-01 X 19973590 19973590 G T CXorf23 Missense_Mutation p.L457I 0.11 tolerated(0.06) possibly_damaging(0.615) TCGA-EA-A3HU-01 X 24859948 24859948 G C POLA1 Splice_Site p.X1299_splice 0.16 TCGA-EA-A3HU-01 X 25031391 25031391 C G ARX Missense_Mutation p.E241Q 0.38 tolerated_low_confidence(0.06) benign(0.403) TCGA-EA-A3HU-01 X 25033880 25033880 G A ARX 5'UTR 0.20 TCGA-EA-A3HU-01 X 26212649 26212649 A G MAGEB6 Missense_Mutation p.Y229C 0.20 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HU-01 X 30255459 30255459 A C MAGEB3 3'UTR 0.25 TCGA-EA-A3HU-01 X 30872356 30872356 G A TAB3 Missense_Mutation p.R476C 0.14 deleterious(0) possibly_damaging(0.487) TCGA-EA-A3HU-01 X 3227655 3227655 C T MXRA5 3'UTR 0.24 TCGA-EA-A3HU-01 X 32466646 32466646 T - DMD Frame_Shift_Del p.K1238Rfs*6 0.24 TCGA-EA-A3HU-01 X 34148613 34148613 C T FAM47A Missense_Mutation p.V595I 0.14 tolerated(0.36) benign(0.023) TCGA-EA-A3HU-01 X 36371742 36371742 G A CXorf30 Missense_Mutation p.E379K 0.21 tolerated(0.34) benign(0.04) TCGA-EA-A3HU-01 X 39922921 39922921 C A BCOR Nonsense_Mutation p.E1263* 0.14 TCGA-EA-A3HU-01 X 40999952 40999952 G A USP9X Missense_Mutation p.G233E 0.20 deleterious(0) probably_damaging(0.997) TCGA-EA-A3HU-01 X 41089034 41089035 - A USP9X Frame_Shift_Ins p.A2481Sfs*17 0.15 TCGA-EA-A3HU-01 X 41379397 41379397 A C CASK 3'UTR 0.11 TCGA-EA-A3HU-01 X 41390272 41390272 G A CASK Silent p.D831D 0.21 TCGA-EA-A3HU-01 X 44922854 44922854 T G KDM6A Missense_Mutation p.F572C 0.27 deleterious_low_confidence(0.03) benign(0.008) TCGA-EA-A3HU-01 X 44928976 44928976 G - KDM6A Frame_Shift_Del p.A694Lfs*21 0.13 TCGA-EA-A3HU-01 X 46513050 46513050 A C SLC9A7 Missense_Mutation p.F380V 0.26 deleterious(0.01) possibly_damaging(0.643) TCGA-EA-A3HU-01 X 47041150 47041150 G A RBM10 Silent p.S526S 0.21 TCGA-EA-A3HU-01 X 47272495 47272495 G T ZNF157 Missense_Mutation p.M341I 0.21 tolerated(0.29) benign(0.001) TCGA-EA-A3HU-01 X 47511528 47511528 G A UXT Silent p.L136L 0.19 TCGA-EA-A3HU-01 X 47583417 47583417 T C CXXC1P1 RNA 0.29 TCGA-EA-A3HU-01 X 48663867 48663867 C A HDAC6 Missense_Mutation p.L112I 0.15 tolerated(0.14) benign(0.026) TCGA-EA-A3HU-01 X 48760537 48760537 G C SLC35A2 3'UTR 0.12 TCGA-EA-A3HU-01 X 48760736 48760736 G A SLC35A2 Silent p.L390L 0.13 TCGA-EA-A3HU-01 X 48792055 48792055 C T OTUD5 Missense_Mutation p.G280D 0.26 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 X 48822993 48822993 T G KCND1 Missense_Mutation p.K487Q 0.07 deleterious_low_confidence(0) possibly_damaging(0.734) TCGA-EA-A3HU-01 X 48895555 48895555 C T TFE3 Missense_Mutation p.G289R 0.26 deleterious(0.04) probably_damaging(0.953) TCGA-EA-A3HU-01 X 49642955 49642957 CCT - USP27X 5'Flank 0.09 TCGA-EA-A3HU-01 X 50028145 50028145 G A CCNB3 5'UTR 0.20 TCGA-EA-A3HU-01 X 50131536 50131536 G A DGKK RNA 0.17 TCGA-EA-A3HU-01 X 50167247 50167247 G A DGKK Intron 0.26 TCGA-EA-A3HU-01 X 51487545 51487545 T C GSPT2 Missense_Mutation p.Y275H 0.12 tolerated(0.32) benign(0.05) TCGA-EA-A3HU-01 X 52681983 52681983 T G SSX7 Missense_Mutation p.K41Q 0.23 tolerated(0.18) possibly_damaging(0.607) TCGA-EA-A3HU-01 X 52893804 52893804 C A XAGE3 Missense_Mutation p.G105C 0.26 deleterious(0) probably_damaging(0.951) TCGA-EA-A3HU-01 X 53222364 53222364 C T KDM5C Missense_Mutation p.E1490K 0.23 tolerated_low_confidence(0.35) benign(0.002) TCGA-EA-A3HU-01 X 53262603 53262603 G - IQSEC2 3'UTR 0.28 TCGA-EA-A3HU-01 X 53262659 53262660 - C IQSEC2 3'UTR 0.17 TCGA-EA-A3HU-01 X 53672359 53672359 A C HUWE1 Missense_Mutation p.N136K 0.14 probably_damaging(0.997) TCGA-EA-A3HU-01 X 55043940 55043940 C G ALAS2 Missense_Mutation p.E328Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-EA-A3HU-01 X 56259689 56259689 C T KLF8 5'UTR 0.20 TCGA-EA-A3HU-01 X 62917102 62917102 A C ARHGEF9 Missense_Mutation p.I155S 0.17 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 X 64136735 64136735 A C ZC4H2 3'UTR 0.38 TCGA-EA-A3HU-01 X 64141715 64141715 G A ZC4H2 Silent p.I69I 0.18 TCGA-EA-A3HU-01 X 68058517 68058517 C T EFNB1 Silent p.I62I 0.15 TCGA-EA-A3HU-01 X 69456971 69456971 C T AWAT1 Silent p.G111G 0.14 TCGA-EA-A3HU-01 X 69516913 69516913 G A KIF4A Missense_Mutation p.A101T 0.17 tolerated(0.67) benign(0.026) TCGA-EA-A3HU-01 X 70280810 70280810 G A SNX12 3'UTR 0.22 TCGA-EA-A3HU-01 X 70387591 70387591 G A NLGN3 Silent p.K548K 0.26 TCGA-EA-A3HU-01 X 70390052 70390052 T C NLGN3 3'UTR 0.18 TCGA-EA-A3HU-01 X 70601676 70601676 G C TAF1 Missense_Mutation p.E502Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-EA-A3HU-01 X 70601684 70601684 T A TAF1 Missense_Mutation p.N504K 0.22 tolerated(0.11) benign(0.197) TCGA-EA-A3HU-01 X 70621404 70621404 T G TAF1 Missense_Mutation p.I1291M 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-EA-A3HU-01 X 71360613 71360613 G A NHSL2 Missense_Mutation p.S1072N 0.17 tolerated(0.43) benign(0.046) TCGA-EA-A3HU-01 X 72901073 72901073 C T CHIC1 3'UTR 0.13 TCGA-EA-A3HU-01 X 73041425 73041425 T G XIST RNA 0.17 TCGA-EA-A3HU-01 X 73042432 73042432 T - XIST RNA 0.38 TCGA-EA-A3HU-01 X 73045990 73045990 C G XIST RNA 0.17 TCGA-EA-A3HU-01 X 73066381 73066381 G A XIST RNA 0.23 TCGA-EA-A3HU-01 X 73811719 73811719 A C RLIM Silent p.P477P 0.19 TCGA-EA-A3HU-01 X 73812292 73812292 A - RLIM Frame_Shift_Del p.F286Lfs*34 0.28 TCGA-EA-A3HU-01 X 74144874 74144874 G A KIAA2022 5'UTR 0.50 TCGA-EA-A3HU-01 X 76812921 76812921 C - ATRX Splice_Site p.X2233_splice 0.12 TCGA-EA-A3HU-01 X 78426874 78426874 T G GPR174 Missense_Mutation p.F124V 0.16 deleterious(0.03) possibly_damaging(0.458) TCGA-EA-A3HU-01 X 84534256 84534256 G A POF1B 3'UTR 0.31 TCGA-EA-A3HU-01 X 89177089 89177089 A G TGIF2LX Missense_Mutation p.E2G 0.26 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-EA-A3HU-01 X 90689779 90689779 G A PABPC5 5'Flank 0.16 TCGA-EA-A3HU-01 X 96200544 96200544 C T DIAPH2 Missense_Mutation p.A488V 0.17 tolerated(0.08) unknown(0) TCGA-EA-A3HU-01 X 9677285 9677285 C T TBL1X Intron 0.17 TCGA-EA-A3HU-01 X 9693713 9693713 G A GPR143 3'UTR 0.26 TCGA-EA-A3HU-01 X 99854593 99854593 G T TNMD Missense_Mutation p.R278L 0.33 deleterious(0) probably_damaging(0.993) TCGA-EA-A3HU-01 X 99925959 99925959 G A SRPX2 Missense_Mutation p.R458Q 0.15 tolerated(0.53) benign(0) TCGA-EA-A3QD-01 10 108335606 108335606 C T SORCS1 3'Flank 0.28 TCGA-EA-A3QD-01 10 118635637 118635637 G A ENO4 Missense_Mutation p.G151E 0.43 tolerated(1) probably_damaging(0.969) TCGA-EA-A3QD-01 10 33189321 33189321 C T ITGB1 3'UTR 0.32 TCGA-EA-A3QD-01 10 43650859 43650859 G C CSGALNACT2 Missense_Mutation p.E88Q 0.31 tolerated(0.12) benign(0.152) TCGA-EA-A3QD-01 10 5790084 5790084 T A FAM208B Missense_Mutation p.L1567H 0.35 deleterious(0.03) possibly_damaging(0.855) TCGA-EA-A3QD-01 10 72357976 72357976 G A PRF1 Missense_Mutation p.P501S 0.33 tolerated(0.06) benign(0.191) TCGA-EA-A3QD-01 10 89503210 89503210 C T PAPSS2 Silent p.L435L 0.15 TCGA-EA-A3QD-01 10 93811476 93811476 G A CPEB3 3'UTR 0.27 TCGA-EA-A3QD-01 11 103027232 103027232 G A DYNC2H1 Missense_Mutation p.R1287Q 0.10 benign(0.01) TCGA-EA-A3QD-01 11 107535785 107535785 C G ELMOD1 Missense_Mutation p.I289M 0.44 tolerated(0.08) benign(0.23) TCGA-EA-A3QD-01 11 118964824 118964824 C T H2AFX 3'UTR 0.36 TCGA-EA-A3QD-01 11 2190911 2190911 G A TH Missense_Mutation p.S125L 0.08 deleterious(0.01) benign(0.069) TCGA-EA-A3QD-01 11 47460263 47460264 - C RAPSN Intron 0.18 TCGA-EA-A3QD-01 11 56019727 56019727 G A OR5T3 Missense_Mutation p.E18K 0.22 tolerated_low_confidence(0.35) benign(0.001) TCGA-EA-A3QD-01 11 56570111 56570111 G A OR5G5P RNA 0.40 TCGA-EA-A3QD-01 11 62567920 62567920 C T NXF1 Silent p.L315L 0.18 TCGA-EA-A3QD-01 11 64853951 64853951 C T ZFPL1 Silent p.A93A 0.35 TCGA-EA-A3QD-01 11 65266095 65266095 C T MALAT1 RNA 0.20 TCGA-EA-A3QD-01 11 65266499 65266499 C T MALAT1 RNA 0.19 TCGA-EA-A3QD-01 11 78780941 78780941 C T TENM4 Missense_Mutation p.D17N 0.33 tolerated_low_confidence(0.13) possibly_damaging(0.764) TCGA-EA-A3QD-01 12 102315058 102315058 C T DRAM1 3'UTR 0.23 TCGA-EA-A3QD-01 12 132239006 132239006 G A SFSWAP Silent p.L472L 0.21 TCGA-EA-A3QD-01 12 14659146 14659146 C T PLBD1 Missense_Mutation p.E477K 0.33 tolerated(0.4) possibly_damaging(0.543) TCGA-EA-A3QD-01 12 55714984 55714984 G T OR6C1 Missense_Mutation p.A201S 0.30 deleterious_low_confidence(0.04) benign(0.439) TCGA-EA-A3QD-01 12 57943953 57943953 G A KIF5A 5'UTR 0.33 TCGA-EA-A3QD-01 12 57996619 57996619 G A PIP4K2C 3'UTR 0.33 TCGA-EA-A3QD-01 13 23898522 23898522 G A SGCG Missense_Mutation p.E240K 0.18 tolerated(0.29) possibly_damaging(0.838) TCGA-EA-A3QD-01 13 24471170 24471170 G A C1QTNF9B 5'UTR 0.23 TCGA-EA-A3QD-01 13 72049919 72049919 C G DACH1 Missense_Mutation p.E647Q 0.17 possibly_damaging(0.833) TCGA-EA-A3QD-01 13 95095858 95095858 C T DCT Missense_Mutation p.E438K 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-EA-A3QD-01 14 100995512 100995512 G C WDR25 Silent p.R460R 0.26 TCGA-EA-A3QD-01 14 107083548 107083548 G C IGHV4-59 Missense_Mutation p.S19C 0.45 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EA-A3QD-01 14 22309740 22309740 G A TRAV12-1 Missense_Mutation p.A41T 0.10 tolerated(0.17) benign(0.031) TCGA-EA-A3QD-01 14 24775181 24775181 G A CIDEB Nonsense_Mutation p.Q167* 0.28 TCGA-EA-A3QD-01 14 47311018 47311018 G C MDGA2 3'UTR 0.32 TCGA-EA-A3QD-01 14 52520405 52520405 C T NID2 Missense_Mutation p.E441K 0.17 tolerated(0.74) benign(0.169) TCGA-EA-A3QD-01 14 73238501 73238501 G A DPF3 Nonsense_Mutation p.Q45* 0.19 TCGA-EA-A3QD-01 15 24923236 24923236 C T NPAP1 Missense_Mutation p.S741L 0.32 tolerated(0.59) benign(0.004) TCGA-EA-A3QD-01 15 68649536 68649536 C T ITGA11 Silent p.Q234Q 0.17 TCGA-EA-A3QD-01 15 72492830 72492830 A T PKM Missense_Mutation p.F492I 0.31 deleterious(0.01) benign(0.018) TCGA-EA-A3QD-01 16 19130521 19130521 C G ITPRIPL2 3'UTR 0.29 TCGA-EA-A3QD-01 16 2009605 2009605 G C NDUFB10 5'UTR 0.35 TCGA-EA-A3QD-01 16 20974837 20974837 C A DNAH3 Nonsense_Mutation p.E3457* 0.20 TCGA-EA-A3QD-01 16 3779771 3779771 T A CREBBP Silent p.P1759P 0.25 TCGA-EA-A3QD-01 16 64984907 64984907 C T CDH11 Missense_Mutation p.V553M 0.46 deleterious(0.01) benign(0.342) TCGA-EA-A3QD-01 16 67214570 67214570 C T KIAA0895L Splice_Site 0.27 TCGA-EA-A3QD-01 16 70605920 70605920 C G SF3B3 3'UTR 0.21 TCGA-EA-A3QD-01 16 75682286 75682286 A C TERF2IP Missense_Mutation p.K169T 0.45 deleterious(0.01) probably_damaging(0.98) TCGA-EA-A3QD-01 16 84513559 84513559 C T TLDC1 Missense_Mutation p.R444H 0.20 tolerated(0.27) benign(0.025) TCGA-EA-A3QD-01 16 89349022 89349022 C T ANKRD11 Missense_Mutation p.D1310N 0.17 probably_damaging(0.998) TCGA-EA-A3QD-01 16 89352026 89352026 G A ANKRD11 Silent p.F308F 0.15 TCGA-EA-A3QD-01 17 16331655 16331655 G A TRPV2 Missense_Mutation p.V459M 0.30 tolerated(0.2) benign(0.205) TCGA-EA-A3QD-01 17 3119561 3119561 C A OR1A1 Missense_Mutation p.S216Y 0.27 deleterious(0) probably_damaging(1) TCGA-EA-A3QD-01 17 42018227 42018227 G A PPY 3'UTR 0.35 TCGA-EA-A3QD-01 17 62265534 62265534 C T TEX2 Silent p.G813G 0.25 TCGA-EA-A3QD-01 17 62473998 62473998 T A POLG2 Missense_Mutation p.H467L 0.19 deleterious(0) probably_damaging(0.999) TCGA-EA-A3QD-01 17 648202 648202 C G GEMIN4 Missense_Mutation p.Q1027H 0.29 tolerated(0.07) possibly_damaging(0.807) TCGA-EA-A3QD-01 17 650523 650523 C T GEMIN4 Missense_Mutation p.E254K 0.24 tolerated(0.18) possibly_damaging(0.848) TCGA-EA-A3QD-01 17 7322898 7322898 G A NLGN2 3'UTR 0.29 TCGA-EA-A3QD-01 17 79564319 79564319 G A NPLOC4 Silent p.L315L 0.35 TCGA-EA-A3QD-01 18 2892200 2892200 C T EMILIN2 Missense_Mutation p.T692M 0.38 tolerated(0.07) benign(0.033) TCGA-EA-A3QD-01 18 3151753 3151753 G A MYOM1 Silent p.F594F 0.28 TCGA-EA-A3QD-01 19 15132457 15132457 G A CCDC105 Missense_Mutation p.M357I 0.27 tolerated(0.15) possibly_damaging(0.472) TCGA-EA-A3QD-01 19 17759739 17759739 C T UNC13A Silent p.T526T 0.15 TCGA-EA-A3QD-01 19 17942593 17942593 G A JAK3 Missense_Mutation p.R899W 0.29 deleterious(0) probably_damaging(0.998) TCGA-EA-A3QD-01 19 36252941 36252941 G A C19orf55 Silent p.Q111Q 0.31 TCGA-EA-A3QD-01 19 40998873 40998873 C T SPTBN4 Nonsense_Mutation p.Q167* 0.24 TCGA-EA-A3QD-01 19 41930685 41930685 C T BCKDHA 3'UTR 0.32 TCGA-EA-A3QD-01 19 42191081 42191081 C T CEACAM7 Missense_Mutation p.A46T 0.31 tolerated(0.06) possibly_damaging(0.814) TCGA-EA-A3QD-01 19 42479784 42479784 C T ATP1A3 Missense_Mutation p.E767K 0.23 deleterious(0) benign(0.43) TCGA-EA-A3QD-01 19 48733797 48733797 G A CARD8 Silent p.L311L 0.28 TCGA-EA-A3QD-01 19 49518398 49518398 G C RUVBL2 Silent p.R414R 0.36 TCGA-EA-A3QD-01 19 50837639 50837639 G A NAPSB RNA 0.25 TCGA-EA-A3QD-01 19 54629910 54629910 G A PRPF31 Missense_Mutation p.R288Q 0.33 deleterious(0.01) probably_damaging(0.953) TCGA-EA-A3QD-01 19 55224404 55224404 G T LILRP2 RNA 0.23 TCGA-EA-A3QD-01 19 8386554 8386554 G A RPS28 Silent p.L18L 0.35 TCGA-EA-A3QD-01 19 8982269 8982269 G A MUC16 Silent p.L14002L 0.34 TCGA-EA-A3QD-01 1 151278698 151278698 G A PI4KB Nonsense_Mutation p.R454* 0.33 TCGA-EA-A3QD-01 1 153603994 153603994 G C S100A1 Intron 0.27 TCGA-EA-A3QD-01 1 159752225 159752225 C G DUSP23 3'UTR 0.38 TCGA-EA-A3QD-01 1 160124943 160124943 G A ATP1A4 Missense_Mutation p.G106R 0.30 deleterious(0.02) probably_damaging(0.909) TCGA-EA-A3QD-01 1 160654549 160654549 G T CD48 Intron 0.20 TCGA-EA-A3QD-01 1 168007719 168007719 G A DCAF6 Missense_Mutation p.D574N 0.29 tolerated_low_confidence(0.06) probably_damaging(0.92) TCGA-EA-A3QD-01 1 171673502 171673502 C T VAMP4 3'UTR 0.24 TCGA-EA-A3QD-01 1 201354847 201354847 G A LAD1 Silent p.P371P 0.29 TCGA-EA-A3QD-01 1 212900408 212900408 C T NSL1 3'UTR 0.26 TCGA-EA-A3QD-01 1 226465515 226465515 C T LIN9 Missense_Mutation p.E231K 0.19 tolerated(0.05) probably_damaging(0.98) TCGA-EA-A3QD-01 1 228554822 228554822 C T OBSCN Missense_Mutation p.T7482M 0.18 probably_damaging(0.966) TCGA-EA-A3QD-01 1 24123419 24123419 C T GALE Missense_Mutation p.R219Q 0.41 tolerated(0.07) possibly_damaging(0.871) TCGA-EA-A3QD-01 1 28862519 28862519 C T RCC1 Silent p.L297L 0.24 TCGA-EA-A3QD-01 1 32221619 32221619 G A BAI2 Silent p.F273F 0.26 TCGA-EA-A3QD-01 1 78183553 78183553 A C USP33 Missense_Mutation p.S670R 0.33 deleterious(0.04) possibly_damaging(0.892) TCGA-EA-A3QD-01 1 8073498 8073498 C T ERRFI1 Silent p.K387K 0.21 TCGA-EA-A3QD-01 20 33345195 33345195 C T NCOA6 Silent p.Q452Q 0.62 TCGA-EA-A3QD-01 20 33891634 33891634 G C UQCC1 3'UTR 0.12 TCGA-EA-A3QD-01 20 43132618 43132618 T C SERINC3 Missense_Mutation p.N298S 0.16 tolerated(1) benign(0) TCGA-EA-A3QD-01 20 55213743 55213743 G A TFAP2C 3'UTR 0.32 TCGA-EA-A3QD-01 20 57829911 57829911 G T ZNF831 3'UTR 0.22 TCGA-EA-A3QD-01 20 62595998 62595998 G A ZNF512B Missense_Mutation p.P369L 0.13 tolerated(0.14) benign(0.146) TCGA-EA-A3QD-01 22 23011172 23011172 C T IGLV3-27 Nonsense_Mutation p.R79* 0.19 TCGA-EA-A3QD-01 22 32630960 32630960 G A SLC5A4 Missense_Mutation p.S262F 0.23 tolerated(0.06) probably_damaging(0.972) TCGA-EA-A3QD-01 22 39260545 39260545 G C CBX6 3'UTR 0.35 TCGA-EA-A3QD-01 22 41564513 41564513 G A EP300 Missense_Mutation p.R1312Q 0.29 possibly_damaging(0.896) TCGA-EA-A3QD-01 22 50961885 50961885 G A NCAPH2 3'UTR 0.36 TCGA-EA-A3QD-01 2 100058894 100058894 G C REV1 Missense_Mutation p.Q130E 0.27 deleterious(0.04) probably_damaging(0.997) TCGA-EA-A3QD-01 2 101554272 101554272 G A NPAS2 Missense_Mutation p.D111N 0.32 deleterious(0) probably_damaging(0.94) TCGA-EA-A3QD-01 2 128263232 128263232 C T IWS1 Missense_Mutation p.E83K 0.31 tolerated_low_confidence(0.11) benign(0.437) TCGA-EA-A3QD-01 2 158300367 158300367 G A CYTIP Nonsense_Mutation p.R56* 0.16 TCGA-EA-A3QD-01 2 166896082 166896082 C T SCN1A Missense_Mutation p.E814K 0.24 deleterious(0) benign(0.236) TCGA-EA-A3QD-01 2 171070968 171070968 C T MYO3B Missense_Mutation p.S134L 0.27 deleterious(0) possibly_damaging(0.507) TCGA-EA-A3QD-01 2 179454227 179454227 C T TTN Missense_Mutation p.R20742K 0.31 TCGA-EA-A3QD-01 2 203432213 203432213 C A BMPR2 3'UTR 0.29 TCGA-EA-A3QD-01 2 38978452 38978452 G A SRSF7 5'UTR 0.28 TCGA-EA-A3QD-01 2 96852484 96852484 C A STARD7 Missense_Mutation p.R366L 0.33 deleterious_low_confidence(0.03) benign(0.268) TCGA-EA-A3QD-01 3 131404727 131404727 G A CPNE4 Nonsense_Mutation p.R195* 0.16 TCGA-EA-A3QD-01 3 135869886 135869886 G C MSL2 3'UTR 0.39 TCGA-EA-A3QD-01 3 150176363 150176363 G A TSC22D2 Silent p.V761V 0.14 TCGA-EA-A3QD-01 4 119661914 119661914 G A SEC24D Silent p.T714T 0.29 TCGA-EA-A3QD-01 4 155225868 155225868 G A DCHS2 Missense_Mutation p.S1398F 0.23 tolerated(0.74) benign(0.015) TCGA-EA-A3QD-01 4 170428890 170428890 C T NEK1 Silent p.R629R 0.36 TCGA-EA-A3QD-01 4 20569140 20569140 G A SLIT2 Splice_Site p.X951_splice 0.22 TCGA-EA-A3QD-01 4 30722233 30722233 G A PCDH7 5'Flank 0.30 TCGA-EA-A3QD-01 4 30723058 30723058 G A PCDH7 Missense_Mutation p.R5Q 0.31 tolerated_low_confidence(0.57) benign(0.104) TCGA-EA-A3QD-01 4 30725352 30725352 G A PCDH7 Missense_Mutation p.D770N 0.14 deleterious(0) probably_damaging(0.996) TCGA-EA-A3QD-01 4 69426371 69426371 C T UGT2B17 Missense_Mutation p.V297M 0.40 deleterious(0) probably_damaging(0.976) TCGA-EA-A3QD-01 5 153190775 153190775 C T GRIA1 Missense_Mutation p.T914M 0.28 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-EA-A3QD-01 5 167630771 167630771 G C TENM2 Missense_Mutation p.E1170Q 0.25 deleterious(0) probably_damaging(0.979) TCGA-EA-A3QD-01 5 38942210 38942210 C G RICTOR 3'UTR 0.43 TCGA-EA-A3QD-01 5 56558779 56558779 G T GPBP1 3'UTR 0.19 TCGA-EA-A3QD-01 5 9202081 9202081 G C SEMA5A Missense_Mutation p.I306M 0.35 deleterious(0) possibly_damaging(0.571) TCGA-EA-A3QD-01 6 31729633 31729633 C T MSH5 Silent p.F741F 0.60 TCGA-EA-A3QD-01 6 43100468 43100468 A G PTK7 Intron 0.38 TCGA-EA-A3QD-01 6 96659426 96659426 A C FUT9 3'UTR 0.65 TCGA-EA-A3QD-01 7 100199947 100199947 C T PCOLCE 5'UTR 0.33 TCGA-EA-A3QD-01 7 129815407 129815407 C T TMEM209 Missense_Mutation p.R430K 0.27 tolerated(1) benign(0.006) TCGA-EA-A3QD-01 7 2279272 2279272 G A FTSJ2 Missense_Mutation p.R27W 0.21 deleterious(0) probably_damaging(0.945) TCGA-EA-A3QD-01 7 41729911 41729911 G C INHBA Silent p.L206L 0.21 TCGA-EA-A3QD-01 7 64639820 64639820 C G INTS4L1 RNA 0.19 TCGA-EA-A3QD-01 7 82764745 82764745 C T PCLO Silent p.V707V 0.28 TCGA-EA-A3QD-01 8 105260960 105260960 G A RIMS2 Missense_Mutation p.D1170N 0.19 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-EA-A3QD-01 8 109498775 109498775 C T EMC2 Missense_Mutation p.S281F 0.50 deleterious(0.01) possibly_damaging(0.709) TCGA-EA-A3QD-01 8 33449681 33449681 C T DUSP26 Silent p.L162L 0.40 TCGA-EA-A3QD-01 8 67062588 67062588 C T TRIM55 Missense_Mutation p.A291V 0.26 deleterious(0.04) benign(0.348) TCGA-EA-A3QD-01 8 69069589 69069589 G T PREX2 Missense_Mutation p.D1422Y 0.21 deleterious(0) possibly_damaging(0.751) TCGA-EA-A3QD-01 9 135906463 135906463 G A GTF3C5 Missense_Mutation p.R22Q 0.21 tolerated(0.07) benign(0.121) TCGA-EA-A3QD-01 9 140711934 140711934 G A EHMT1 Missense_Mutation p.V1140M 0.20 deleterious(0) probably_damaging(0.998) TCGA-EA-A3QD-01 9 140878595 140878595 C T CACNA1B Silent p.I554I 0.33 TCGA-EA-A3QD-01 9 32630431 32630431 G A TAF1L Missense_Mutation p.S1716F 0.22 tolerated_low_confidence(0.26) probably_damaging(0.982) TCGA-EA-A3QD-01 9 3932409 3932409 C T GLIS3 Missense_Mutation p.R645K 0.89 deleterious(0) probably_damaging(0.973) TCGA-EA-A3QD-01 9 5462940 5462940 G C CD274 Missense_Mutation p.W167C 0.04 deleterious(0) probably_damaging(1) TCGA-EA-A3QD-01 9 95378117 95378117 G C IPPK Silent p.V491V 0.24 TCGA-EA-A3QD-01 9 95378126 95378126 G A IPPK Silent p.L488L 0.21 TCGA-EA-A3QD-01 X 102006692 102006692 G A BHLHB9 3'UTR 0.27 TCGA-EA-A3QD-01 X 104961411 104961411 C G IL1RAPL2 Missense_Mutation p.S275C 0.19 deleterious(0.03) probably_damaging(0.971) TCGA-EA-A3QD-01 X 107920734 107920734 A T COL4A5 Silent p.L1271L 0.27 TCGA-EA-A3QD-01 X 110544505 110544505 C T DCX 3'UTR 0.21 TCGA-EA-A3QD-01 X 135313040 135313040 G C MAP7D3 Missense_Mutation p.S500C 0.18 deleterious(0) probably_damaging(0.99) TCGA-EA-A3QD-01 X 30864732 30864732 C G TAB3 Missense_Mutation p.M580I 0.19 tolerated(0.44) benign(0.009) TCGA-EA-A3QD-01 X 47835797 47835797 C T ZNF182 Silent p.T563T 0.27 TCGA-EA-A3QD-01 X 48688086 48688086 C T ERAS Missense_Mutation p.R185W 0.28 deleterious(0) benign(0.383) TCGA-EA-A3QD-01 X 49105663 49105663 C T CCDC22 Silent p.I525I 0.21 TCGA-EA-A3QD-01 X 64953115 64953115 C T MSN Silent p.V256V 0.16 TCGA-EA-A3QD-01 X 70795140 70795140 G C OGT 3'UTR 0.15 TCGA-EA-A3QE-01 10 83635529 83635529 G A NRG3 Missense_Mutation p.A145T 0.23 tolerated(0.79) benign(0.009) TCGA-EA-A3QE-01 11 30358265 30358265 C T ARL14EP Missense_Mutation p.R236C 0.26 deleterious(0) benign(0.117) TCGA-EA-A3QE-01 11 48347444 48347444 G A OR4C3 Missense_Mutation p.E318K 0.12 deleterious(0) possibly_damaging(0.794) TCGA-EA-A3QE-01 11 8752742 8752742 G A ST5 Missense_Mutation p.S32F 0.21 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-EA-A3QE-01 12 100994246 100994246 C T GAS2L3 Silent p.Y35Y 0.43 TCGA-EA-A3QE-01 12 104514219 104514219 G C NFYB Missense_Mutation p.Q184E 0.13 deleterious(0.04) benign(0.098) TCGA-EA-A3QE-01 12 112327921 112327921 G C MAPKAPK5 Missense_Mutation p.D434H 0.31 deleterious(0.02) possibly_damaging(0.73) TCGA-EA-A3QE-01 12 14613933 14613933 C T ATF7IP Missense_Mutation p.S888F 0.09 deleterious_low_confidence(0) unknown(0) TCGA-EA-A3QE-01 12 78604585 78604585 C A NAV3 3'Flank 0.18 TCGA-EA-A3QE-01 14 22192111 22192111 G A TRAV3 5'UTR 0.27 TCGA-EA-A3QE-01 14 27066718 27066718 T C NOVA1 5'UTR 0.08 TCGA-EA-A3QE-01 14 68290309 68290309 G T RAD51B Missense_Mutation p.D17Y 0.19 deleterious(0) possibly_damaging(0.519) TCGA-EA-A3QE-01 14 68290317 68290317 G A RAD51B Silent p.L19L 0.23 TCGA-EA-A3QE-01 14 77797494 77797494 C T GSTZ1 Missense_Mutation p.H203Y 0.12 deleterious(0) probably_damaging(0.963) TCGA-EA-A3QE-01 15 101858545 101858545 G A PCSK6 Missense_Mutation p.H849Y 0.15 deleterious(0.03) benign(0.15) TCGA-EA-A3QE-01 15 42764501 42764501 G A ZNF106 5'UTR 0.26 TCGA-EA-A3QE-01 15 42821973 42821973 G T SNAP23 Nonsense_Mutation p.E176* 0.21 TCGA-EA-A3QE-01 15 88576247 88576247 C T NTRK3 Missense_Mutation p.D476N 0.30 deleterious(0.04) benign(0.111) TCGA-EA-A3QE-01 16 15872658 15872658 C T MYH11 Missense_Mutation p.V264M 0.21 benign(0.041) TCGA-EA-A3QE-01 16 19871676 19871676 C T GPRC5B 3'UTR 0.20 TCGA-EA-A3QE-01 16 31765213 31765213 A T ZNF720 Missense_Mutation p.E118V 0.26 deleterious(0) possibly_damaging(0.617) TCGA-EA-A3QE-01 16 50069753 50069753 G A CNEP1R1 3'UTR 0.20 TCGA-EA-A3QE-01 16 85741330 85741330 C T C16orf74 3'UTR 0.38 TCGA-EA-A3QE-01 17 21321934 21321934 C G KCNJ12 3'UTR 0.27 TCGA-EA-A3QE-01 17 21322846 21322846 C G KCNJ12 3'UTR 0.20 TCGA-EA-A3QE-01 17 37884255 37884255 G A ERBB2 Silent p.T1242T 0.34 TCGA-EA-A3QE-01 17 44102943 44102943 C T MAPT 3'UTR 0.36 TCGA-EA-A3QE-01 17 47755313 47755313 G A SPOP 5'UTR 0.50 TCGA-EA-A3QE-01 17 56357796 56357796 G A MPO Missense_Mutation p.S60L 0.18 tolerated(0.07) benign(0.021) TCGA-EA-A3QE-01 17 65980315 65980315 C A BPTF 3'Flank 0.08 TCGA-EA-A3QE-01 17 72350638 72350638 G A KIF19 Silent p.E882E 0.20 TCGA-EA-A3QE-01 17 75205475 75205475 G A SEC14L1 Missense_Mutation p.E510K 0.21 tolerated(0.07) probably_damaging(0.999) TCGA-EA-A3QE-01 18 2920222 2920222 G A LPIN2 3'UTR 0.16 TCGA-EA-A3QE-01 18 50866187 50866187 G A DCC Missense_Mutation p.G757S 0.15 deleterious(0) probably_damaging(0.996) TCGA-EA-A3QE-01 18 67563262 67563262 C A CD226 Silent p.V134V 0.25 TCGA-EA-A3QE-01 19 40827897 40827897 C T C19orf47 Silent p.R387R 0.12 TCGA-EA-A3QE-01 19 54308691 54308691 G A NLRP12 Missense_Mutation p.R753C 0.13 tolerated(0.21) benign(0.004) TCGA-EA-A3QE-01 19 55543646 55543646 C T GP6 Silent p.L62L 0.14 TCGA-EA-A3QE-01 19 56274354 56274354 C T RFPL4A Missense_Mutation p.S226F 0.03 tolerated(0.28) benign(0.083) TCGA-EA-A3QE-01 19 58132306 58132306 C G ZNF134 Silent p.S273S 0.10 TCGA-EA-A3QE-01 19 58578800 58578800 C T ZNF135 Silent p.H340H 0.23 TCGA-EA-A3QE-01 1 109472737 109472737 G A GPSM2 3'UTR 0.25 TCGA-EA-A3QE-01 1 145015865 145015865 C G RP11-326G21.1 5'Flank 0.05 TCGA-EA-A3QE-01 1 16069615 16069615 G A TMEM82 Missense_Mutation p.G88R 0.20 deleterious(0.02) benign(0.386) TCGA-EA-A3QE-01 1 161480721 161480721 C G FCGR2A Missense_Mutation p.I239M 0.09 tolerated(0.06) probably_damaging(0.931) TCGA-EA-A3QE-01 1 173876634 173876634 C T SERPINC1 Missense_Mutation p.R391Q 0.12 tolerated(0.25) benign(0.002) TCGA-EA-A3QE-01 1 178491537 178491537 G A TEX35 Missense_Mutation p.A222T 0.15 tolerated_low_confidence(0.45) benign(0.013) TCGA-EA-A3QE-01 1 180913548 180913548 G A KIAA1614 Silent p.R1061R 0.27 TCGA-EA-A3QE-01 1 200876963 200876963 G A C1orf106 Silent p.E174E 0.26 TCGA-EA-A3QE-01 1 28696259 28696259 G A PHACTR4 5'UTR 0.16 TCGA-EA-A3QE-01 1 32210276 32210276 C T BAI2 Missense_Mutation p.E299K 0.13 tolerated(0.06) possibly_damaging(0.546) TCGA-EA-A3QE-01 1 35886346 35886346 C G ZMYM4 3'UTR 0.24 TCGA-EA-A3QE-01 1 6638780 6638780 G A TAS1R1 Silent p.P554P 0.18 TCGA-EA-A3QE-01 1 94982641 94982641 G A ABCD3 Missense_Mutation p.E646K 0.29 tolerated(0.06) benign(0.017) TCGA-EA-A3QE-01 20 23614632 23614632 G T CST3 Missense_Mutation p.A121E 0.22 tolerated(0.88) benign(0.375) TCGA-EA-A3QE-01 20 36641902 36641902 G A TTI1 Missense_Mutation p.S106L 0.19 deleterious(0.02) benign(0.288) TCGA-EA-A3QE-01 20 5480027 5480027 T G LINC00654 RNA 0.27 TCGA-EA-A3QE-01 20 9523320 9523320 G A PAK7 Silent p.G639G 0.24 TCGA-EA-A3QE-01 21 28295194 28295194 C T ADAMTS5 3'UTR 0.17 TCGA-EA-A3QE-01 22 17082954 17082954 G C TPTEP1 RNA 0.23 TCGA-EA-A3QE-01 2 109237877 109237877 G A LIMS1 Missense_Mutation p.D23N 0.24 tolerated_low_confidence(0.48) benign(0) TCGA-EA-A3QE-01 2 120702698 120702698 C G PTPN4 Missense_Mutation p.P466R 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-EA-A3QE-01 2 160998513 160998513 G A ITGB6 Silent p.L363L 0.15 TCGA-EA-A3QE-01 2 165586456 165586456 C T COBLL1 Missense_Mutation p.D134N 0.15 deleterious(0.01) possibly_damaging(0.521) TCGA-EA-A3QE-01 2 240944651 240944651 C T NDUFA10 Missense_Mutation p.R289H 0.06 tolerated(0.57) benign(0.022) TCGA-EA-A3QE-01 2 33736799 33736799 C T RASGRP3 5'UTR 0.17 TCGA-EA-A3QE-01 2 80773063 80773063 G A CTNNA2 Missense_Mutation p.R472Q 0.22 tolerated(0.14) benign(0.221) TCGA-EA-A3QE-01 2 88367422 88367422 C T SMYD1 Silent p.T13T 0.28 TCGA-EA-A3QE-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.31 tolerated(0.11) possibly_damaging(0.529) TCGA-EA-A3QE-01 3 39133113 39133113 C T WDR48 Intron 0.29 TCGA-EA-A3QE-01 4 100349082 100349082 G T ADH7 Missense_Mutation p.H158N 0.24 deleterious(0.04) benign(0.067) TCGA-EA-A3QE-01 4 143324099 143324099 G T INPP4B Missense_Mutation p.H122N 0.17 deleterious(0.01) benign(0.04) TCGA-EA-A3QE-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.23 deleterious(0) probably_damaging(1) TCGA-EA-A3QE-01 4 155411341 155411341 G A DCHS2 Silent p.G389G 0.33 TCGA-EA-A3QE-01 4 1824750 1824750 G A LETM1 Missense_Mutation p.R481C 0.24 deleterious(0.01) possibly_damaging(0.462) TCGA-EA-A3QE-01 4 22437053 22437053 G A GPR125 Nonsense_Mutation p.R442* 0.11 TCGA-EA-A3QE-01 5 120022722 120022722 C G PRR16 3'UTR 0.27 TCGA-EA-A3QE-01 5 140720212 140720212 C T PCDHGA2 Silent p.N558N 0.22 TCGA-EA-A3QE-01 5 167551886 167551886 C T TENM2 Silent p.H680H 0.18 TCGA-EA-A3QE-01 5 180626112 180626112 G T TRIM7 Missense_Mutation p.F285L 0.17 tolerated(0.21) benign(0.05) TCGA-EA-A3QE-01 6 117710546 117710546 G A ROS1 Nonsense_Mutation p.Q576* 0.12 TCGA-EA-A3QE-01 6 136560647 136560647 C T MTFR2 Missense_Mutation p.V276I 0.35 deleterious(0.04) possibly_damaging(0.456) TCGA-EA-A3QE-01 6 142691670 142691670 G C GPR126 Missense_Mutation p.R270T 0.15 tolerated(0.41) benign(0.209) TCGA-EA-A3QE-01 6 350564 350564 C T DUSP22 Intron 0.45 TCGA-EA-A3QE-01 6 74517881 74517881 C G CD109 Missense_Mutation p.L1089V 0.33 deleterious(0.01) probably_damaging(0.98) TCGA-EA-A3QE-01 7 131187440 131187440 A G PODXL 3'Flank 0.36 TCGA-EA-A3QE-01 7 134880995 134880995 G A WDR91 Missense_Mutation p.S382L 0.14 tolerated(0.21) benign(0) TCGA-EA-A3QE-01 7 147092868 147092868 G A CNTNAP2 Missense_Mutation p.D556N 0.22 deleterious(0.01) possibly_damaging(0.849) TCGA-EA-A3QE-01 7 149171621 149171621 G A ZNF746 Nonsense_Mutation p.R598* 0.22 TCGA-EA-A3QE-01 7 150733220 150733220 C T ABCB8 Silent p.I358I 0.18 TCGA-EA-A3QE-01 7 157046952 157046952 T C UBE3C Silent p.G966G 0.13 TCGA-EA-A3QE-01 8 59345735 59345735 G A UBXN2B Missense_Mutation p.G119E 0.09 deleterious(0) probably_damaging(1) TCGA-EA-A3QE-01 9 115380184 115380184 A T KIAA1958 Intron 0.17 TCGA-EA-A3QE-01 9 116263868 116263868 C A RGS3 Intron 0.22 TCGA-EA-A3QE-01 9 116790996 116790996 G C ZNF618 Intron 0.14 TCGA-EA-A3QE-01 9 139399191 139399191 G A NOTCH1 Missense_Mutation p.S1651L 0.24 deleterious(0) benign(0.102) TCGA-EA-A3QE-01 9 19116401 19116401 C A PLIN2 Missense_Mutation p.D387Y 0.07 deleterious(0.01) possibly_damaging(0.797) TCGA-EA-A3QE-01 9 39149948 39149948 C T CNTNAP3 Missense_Mutation p.G502R 0.23 tolerated(0.36) benign(0.021) TCGA-EA-A3QE-01 X 100402754 100402754 A G CENPI Missense_Mutation p.Y610C 0.22 deleterious(0) probably_damaging(0.997) TCGA-EA-A3QE-01 X 130217839 130217839 C T ARHGAP36 Missense_Mutation p.R151W 0.20 deleterious(0) probably_damaging(0.999) TCGA-EA-A3QE-01 X 134166458 134166458 G A FAM127A Silent p.P15P 0.32 TCGA-EA-A3QE-01 X 13645279 13645279 C T EGFL6 Nonsense_Mutation p.R480* 0.16 TCGA-EA-A3QE-01 X 140992851 140992851 G A MAGEC1 5'UTR 0.22 TCGA-EA-A3QE-01 X 153227013 153227014 - TGT HCFC1 In_Frame_Ins p.N294dup 0.31 TCGA-EA-A3QE-01 X 153585975 153585975 G A FLNA Missense_Mutation p.P1591L 0.14 deleterious(0.02) benign(0.168) TCGA-EA-A3QE-01 X 154124426 154124426 G A F8 Nonsense_Mutation p.Q2119* 0.05 TCGA-EA-A3QE-01 X 62857853 62857853 C G ARHGEF9 3'UTR 0.07 TCGA-EA-A3Y4-01 10 112052925 112052925 C T SMNDC1 3'UTR 0.29 TCGA-EA-A3Y4-01 10 16866879 16866879 C T CUBN 3'UTR 0.14 TCGA-EA-A3Y4-01 10 25885569 25885569 C T GPR158 Intron 0.33 TCGA-EA-A3Y4-01 10 32561043 32561043 G A EPC1 Missense_Mutation p.A662V 0.60 deleterious(0) probably_damaging(0.992) TCGA-EA-A3Y4-01 10 70932539 70932539 G T VPS26A 3'UTR 0.50 TCGA-EA-A3Y4-01 11 10830402 10830402 C A EIF4G2 5'Flank 0.24 TCGA-EA-A3Y4-01 11 10875792 10875792 T C ZBED5 Missense_Mutation p.Y234C 0.12 tolerated(0.16) benign(0.071) TCGA-EA-A3Y4-01 11 118888132 118888132 C T RPS25 Missense_Mutation p.E75K 0.31 deleterious(0) possibly_damaging(0.72) TCGA-EA-A3Y4-01 11 129830788 129830788 C T PRDM10 Intron 0.18 TCGA-EA-A3Y4-01 11 129830857 129830857 C T PRDM10 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0.01) probably_damaging(0.946) TCGA-EA-A3Y4-01 11 129830863 129830863 C G PRDM10 5'UTR 0.30 TCGA-EA-A3Y4-01 11 14282292 14282292 G A RP11-21L19.1 3'Flank 0.28 TCGA-EA-A3Y4-01 11 2439793 2439793 G A TRPM5 Silent p.L226L 0.26 TCGA-EA-A3Y4-01 11 32610234 32610234 G A EIF3M Silent p.L90L 0.27 TCGA-EA-A3Y4-01 11 34101277 34101277 C G CAPRIN1 Nonsense_Mutation p.S264* 0.30 TCGA-EA-A3Y4-01 11 45868760 45868760 C T CRY2 5'Flank 0.26 TCGA-EA-A3Y4-01 11 6587071 6587071 G C DNHD1 Missense_Mutation p.E3635Q 0.20 benign(0.005) TCGA-EA-A3Y4-01 11 71726075 71726075 G A NUMA1 Missense_Mutation p.A825V 0.21 benign(0.381) TCGA-EA-A3Y4-01 11 92087080 92087080 C T FAT3 Missense_Mutation p.S601L 0.21 probably_damaging(0.998) TCGA-EA-A3Y4-01 12 109915110 109915110 G A KCTD10 5'UTR 0.23 TCGA-EA-A3Y4-01 12 2716295 2716295 G C CACNA1C Missense_Mutation p.E1139Q 0.35 tolerated(0.5) benign(0.009) TCGA-EA-A3Y4-01 12 43840503 43840503 C T ADAMTS20 Missense_Mutation p.D698N 0.40 deleterious(0.03) probably_damaging(1) TCGA-EA-A3Y4-01 12 57919663 57919663 G C MBD6 Silent p.L304L 0.23 TCGA-EA-A3Y4-01 12 69968293 69968293 G A FRS2 Missense_Mutation p.R362H 0.36 tolerated(0.11) benign(0.003) TCGA-EA-A3Y4-01 12 7476146 7476146 C T ACSM4 Missense_Mutation p.S433F 0.44 deleterious(0.01) possibly_damaging(0.789) TCGA-EA-A3Y4-01 12 76424550 76424550 C T PHLDA1 Silent p.Q324Q 0.32 TCGA-EA-A3Y4-01 12 85517847 85517847 G C LRRIQ1 Splice_Site p.X1186_splice 0.18 TCGA-EA-A3Y4-01 12 8672931 8672931 G A CLEC4D Missense_Mutation p.R165H 0.38 tolerated(1) benign(0.004) TCGA-EA-A3Y4-01 12 98849969 98849969 G C SLC9A7P1 RNA 0.22 TCGA-EA-A3Y4-01 13 31221109 31221109 G A USPL1 Missense_Mutation p.E385K 0.23 tolerated(0.07) benign(0.27) TCGA-EA-A3Y4-01 13 33054766 33054766 C T N4BP2L2 Intron 0.19 TCGA-EA-A3Y4-01 13 37422783 37422783 C T SMAD9 3'UTR 0.17 TCGA-EA-A3Y4-01 13 46357699 46357699 C T SIAH3 Missense_Mutation p.R210Q 0.29 deleterious(0.03) possibly_damaging(0.825) TCGA-EA-A3Y4-01 13 48830439 48830439 G A ITM2B Missense_Mutation p.E125K 0.21 deleterious(0.01) benign(0.045) TCGA-EA-A3Y4-01 13 98829517 98829517 G A RNF113B 5'UTR 0.25 TCGA-EA-A3Y4-01 14 23885517 23885517 G A MYH7 Missense_Mutation p.S1550F 0.18 deleterious(0.02) probably_damaging(0.959) TCGA-EA-A3Y4-01 14 69261675 69261675 C T ZFP36L1 5'Flank 0.30 TCGA-EA-A3Y4-01 14 69343916 69343916 G A ACTN1 Silent p.P823P 0.31 TCGA-EA-A3Y4-01 14 75129792 75129792 G A AREL1 3'UTR 0.12 TCGA-EA-A3Y4-01 14 94568898 94568898 C T IFI27L1 Missense_Mutation p.S100L 0.30 deleterious(0.01) benign(0.307) TCGA-EA-A3Y4-01 15 22383378 22383378 G C OR4N4 Missense_Mutation p.L302F 0.14 tolerated(0.75) benign(0.005) TCGA-EA-A3Y4-01 15 24921288 24921288 C A NPAP1 Missense_Mutation p.L92M 0.26 tolerated(0.07) probably_damaging(0.976) TCGA-EA-A3Y4-01 15 29997798 29997798 C G TJP1 Missense_Mutation p.E1668Q 0.22 tolerated(0.05) probably_damaging(0.967) TCGA-EA-A3Y4-01 15 52605608 52605608 C G MYO5A 3'UTR 0.35 TCGA-EA-A3Y4-01 15 66161824 66161824 C G RAB11A 5'UTR 0.13 TCGA-EA-A3Y4-01 15 73614928 73614928 C T HCN4 Missense_Mutation p.G1169E 0.29 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EA-A3Y4-01 15 77096936 77096936 G C SCAPER Missense_Mutation p.F144L 0.22 deleterious(0) probably_damaging(0.995) TCGA-EA-A3Y4-01 16 1260464 1260464 G C CACNA1H Missense_Mutation p.E1314Q 0.29 deleterious(0) probably_damaging(0.993) TCGA-EA-A3Y4-01 16 30536771 30536771 C T ZNF768 Silent p.E230E 0.42 TCGA-EA-A3Y4-01 16 31487834 31487834 C T TGFB1I1 Silent p.H307H 0.26 TCGA-EA-A3Y4-01 16 419128 419128 C A MRPL28 Silent p.V127V 0.47 TCGA-EA-A3Y4-01 16 4462354 4462354 C T CORO7 Intron 0.24 TCGA-EA-A3Y4-01 16 69731644 69731646 CTC TT NFAT5 3'UTR 0.11 TCGA-EA-A3Y4-01 16 69732367 69732367 C G NFAT5 3'UTR 0.18 TCGA-EA-A3Y4-01 16 69732551 69732551 C T NFAT5 3'UTR 0.27 TCGA-EA-A3Y4-01 16 69732830 69732830 C G NFAT5 3'UTR 0.11 TCGA-EA-A3Y4-01 16 69733473 69733473 C A NFAT5 3'UTR 0.20 TCGA-EA-A3Y4-01 16 69735476 69735476 G C NFAT5 3'UTR 0.25 TCGA-EA-A3Y4-01 16 69736002 69736002 G A NFAT5 3'UTR 0.40 TCGA-EA-A3Y4-01 16 69736229 69736229 G A NFAT5 3'UTR 0.50 TCGA-EA-A3Y4-01 16 69736665 69736665 G A NFAT5 3'UTR 0.23 TCGA-EA-A3Y4-01 16 70778474 70778474 C T VAC14 Silent p.L460L 0.30 TCGA-EA-A3Y4-01 16 81175053 81175053 G A PKD1L2 RNA 0.25 TCGA-EA-A3Y4-01 16 88787119 88787119 C G PIEZO1 Missense_Mutation p.E1902D 0.30 tolerated(0.41) benign(0.11) TCGA-EA-A3Y4-01 16 90036653 90036653 G T CENPBD1 3'UTR 0.21 TCGA-EA-A3Y4-01 17 10304060 10304060 C G MYH8 Missense_Mutation p.E1128Q 0.27 deleterious(0.01) probably_damaging(1) TCGA-EA-A3Y4-01 17 2281243 2281243 G A SGSM2 Silent p.K965K 0.25 TCGA-EA-A3Y4-01 17 35878758 35878758 C T SYNRG 3'UTR 0.34 TCGA-EA-A3Y4-01 17 36484561 36484561 C T GPR179 Missense_Mutation p.D1631N 0.29 tolerated(0.12) benign(0.316) TCGA-EA-A3Y4-01 17 36484589 36484589 C T GPR179 Silent p.E1621E 0.30 TCGA-EA-A3Y4-01 17 37565278 37565278 G A MED1 Nonsense_Mutation p.Q1066* 0.20 TCGA-EA-A3Y4-01 17 39919565 39919565 C T JUP Silent p.L389L 0.33 TCGA-EA-A3Y4-01 17 39925391 39925391 C G JUP Silent p.L179L 0.32 TCGA-EA-A3Y4-01 17 42928286 42928286 G A EFTUD2 3'UTR 0.38 TCGA-EA-A3Y4-01 17 5009474 5009474 C G ZNF232 Missense_Mutation p.G327A 0.24 deleterious(0) possibly_damaging(0.629) TCGA-EA-A3Y4-01 17 53237197 53237197 G C STXBP4 Missense_Mutation p.M529I 0.27 tolerated(0.11) benign(0.021) TCGA-EA-A3Y4-01 17 8384713 8384713 C T MYH10 Missense_Mutation p.E1731K 0.30 possibly_damaging(0.71) TCGA-EA-A3Y4-01 17 8508240 8508240 C G MYH10 Missense_Mutation p.E136Q 0.18 possibly_damaging(0.514) TCGA-EA-A3Y4-01 18 29444664 29444664 C G TRAPPC8 Missense_Mutation p.E891Q 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-EA-A3Y4-01 18 47500758 47500758 G C MYO5B Silent p.L428L 0.21 TCGA-EA-A3Y4-01 18 48556599 48556599 C T SMAD4 5'UTR 0.29 TCGA-EA-A3Y4-01 19 12188060 12188060 C T ZNF844 3'UTR 0.38 TCGA-EA-A3Y4-01 19 15571020 15571020 C T RASAL3 Missense_Mutation p.R219Q 0.32 tolerated(0.27) benign(0.012) TCGA-EA-A3Y4-01 19 16146741 16146741 G C LINC00905 RNA 0.23 TCGA-EA-A3Y4-01 19 38901842 38901842 C T RASGRP4 Missense_Mutation p.E589K 0.19 deleterious(0) probably_damaging(0.999) TCGA-EA-A3Y4-01 19 38903439 38903439 C G RASGRP4 Missense_Mutation p.R518T 0.10 deleterious(0.02) benign(0.423) TCGA-EA-A3Y4-01 19 39063838 39063838 C T RYR1 Missense_Mutation p.R4674W 0.29 unknown(0) TCGA-EA-A3Y4-01 19 39874251 39874251 G C SAMD4B 3'UTR 0.25 TCGA-EA-A3Y4-01 19 44278346 44278346 C T KCNN4 Silent p.E227E 0.23 TCGA-EA-A3Y4-01 19 46003774 46003774 C G PPM1N Nonsense_Mutation p.S373* 0.28 TCGA-EA-A3Y4-01 19 47823991 47823991 C T C5AR1 Silent p.L319L 0.18 TCGA-EA-A3Y4-01 19 55856064 55856064 C T AC020922.1 5'UTR 0.25 TCGA-EA-A3Y4-01 1 10165581 10165581 C T UBE4B Silent p.S196S 0.32 TCGA-EA-A3Y4-01 1 109351920 109351920 G T STXBP3 3'UTR 0.20 TCGA-EA-A3Y4-01 1 110882124 110882124 C T RBM15 Nonsense_Mutation p.Q33* 0.21 TCGA-EA-A3Y4-01 1 150548832 150548832 G A MCL1 3'UTR 0.19 TCGA-EA-A3Y4-01 1 151681738 151681738 C T CELF3 Missense_Mutation p.D122N 0.21 deleterious(0) benign(0.39) TCGA-EA-A3Y4-01 1 151681743 151681743 G T CELF3 Missense_Mutation p.T120N 0.21 tolerated(0.4) benign(0.008) TCGA-EA-A3Y4-01 1 161496390 161496390 C T HSPA6 3'UTR 0.26 TCGA-EA-A3Y4-01 1 162469921 162469921 C T UHMK1 Missense_Mutation p.L149F 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-EA-A3Y4-01 1 1736005 1736005 G C GNB1 Missense_Mutation p.L95V 0.23 deleterious(0.01) benign(0.082) TCGA-EA-A3Y4-01 1 182616020 182616020 C T RGS8 Silent p.T149T 0.32 TCGA-EA-A3Y4-01 1 184671965 184671965 G C EDEM3 Missense_Mutation p.S790C 0.28 tolerated(0.05) probably_damaging(0.94) TCGA-EA-A3Y4-01 1 207196584 207196584 C G C1orf116 Missense_Mutation p.Q175H 0.18 deleterious(0.02) probably_damaging(0.937) TCGA-EA-A3Y4-01 1 228511046 228511046 G A OBSCN Missense_Mutation p.E6088K 0.36 probably_damaging(0.942) TCGA-EA-A3Y4-01 1 228560176 228560176 C T OBSCN Nonsense_Mutation p.Q8190* 0.29 TCGA-EA-A3Y4-01 1 237777443 237777443 T A RYR2 Missense_Mutation p.V1672E 0.31 probably_damaging(0.999) TCGA-EA-A3Y4-01 1 248224230 248224230 G C OR2L3 Missense_Mutation p.D83H 0.34 deleterious(0.01) benign(0.005) TCGA-EA-A3Y4-01 1 27733770 27733770 G C WASF2 3'UTR 0.47 TCGA-EA-A3Y4-01 1 34102038 34102038 C G CSMD2 Missense_Mutation p.E1591Q 0.22 tolerated(0.7) benign(0.014) TCGA-EA-A3Y4-01 1 35223480 35223480 G C GJB5 Missense_Mutation p.K183N 0.48 deleterious(0) probably_damaging(0.999) TCGA-EA-A3Y4-01 1 36387344 36387344 C T AGO1 3'UTR 0.30 TCGA-EA-A3Y4-01 1 41012986 41012986 G C ZNF684 Missense_Mutation p.E331Q 0.21 tolerated(0.08) benign(0.017) TCGA-EA-A3Y4-01 1 43748630 43748630 G C C1orf210 Silent p.L56L 0.38 TCGA-EA-A3Y4-01 1 43814553 43814553 G C MPL Missense_Mutation p.E450Q 0.26 deleterious(0.01) possibly_damaging(0.887) TCGA-EA-A3Y4-01 1 62703792 62703792 G A KANK4 3'UTR 0.22 TCGA-EA-A3Y4-01 1 67890585 67890585 G C SERBP1 Silent p.V227V 0.22 TCGA-EA-A3Y4-01 1 86904663 86904663 G A CLCA2 Silent p.E359E 0.23 TCGA-EA-A3Y4-01 1 93618174 93618174 G C TMED5 3'UTR 0.23 TCGA-EA-A3Y4-01 1 93618215 93618215 G C TMED5 3'UTR 0.34 TCGA-EA-A3Y4-01 20 30681813 30681813 C T HCK Missense_Mutation p.R414W 0.30 deleterious(0) probably_damaging(0.996) TCGA-EA-A3Y4-01 20 34535808 34535808 G C PHF20 3'UTR 0.33 TCGA-EA-A3Y4-01 20 419231 419231 C A TBC1D20 Nonstop_Mutation p.*404Lext*60 0.33 TCGA-EA-A3Y4-01 20 48521931 48521931 C T SPATA2 3'UTR 0.24 TCGA-EA-A3Y4-01 20 5454497 5454497 C T RP5-828H9.1 RNA 0.25 TCGA-EA-A3Y4-01 20 60893630 60893631 - CGGT LAMA5 Frame_Shift_Ins p.L2374Pfs*62 0.27 TCGA-EA-A3Y4-01 21 30329098 30329098 T A LTN1 Missense_Mutation p.E1068V 0.25 tolerated(0.23) benign(0.005) TCGA-EA-A3Y4-01 21 47406452 47406452 G A COL6A1 Silent p.L147L 0.26 TCGA-EA-A3Y4-01 22 19709399 19709399 C T SEPT5 Missense_Mutation p.T290M 0.19 deleterious(0.01) probably_damaging(0.957) TCGA-EA-A3Y4-01 22 19776256 19776256 G T GNB1L Silent p.L320L 0.34 TCGA-EA-A3Y4-01 22 26164199 26164199 G A MYO18B Missense_Mutation p.G106S 0.12 tolerated_low_confidence(0.29) benign(0.005) TCGA-EA-A3Y4-01 22 36700097 36700097 C G MYH9 Missense_Mutation p.K778N 0.31 probably_damaging(0.999) TCGA-EA-A3Y4-01 22 36700117 36700117 C T MYH9 Missense_Mutation p.E772K 0.26 probably_damaging(0.999) TCGA-EA-A3Y4-01 22 37414661 37414661 G A TST Missense_Mutation p.S38L 0.38 tolerated(1) benign(0.232) TCGA-EA-A3Y4-01 22 41631176 41631176 G C CHADL Missense_Mutation p.I745M 0.20 tolerated(0.26) benign(0.002) TCGA-EA-A3Y4-01 22 42049549 42049549 C T XRCC6 Silent p.F382F 0.23 TCGA-EA-A3Y4-01 22 42483070 42483070 G C NDUFA6 Silent p.V109V 0.17 TCGA-EA-A3Y4-01 22 43089412 43089412 G A A4GALT Silent p.L182L 0.29 TCGA-EA-A3Y4-01 22 46758499 46758499 G A CELSR1 3'UTR 0.23 TCGA-EA-A3Y4-01 2 175213653 175213653 C T CIR1 Missense_Mutation p.E309K 0.14 tolerated_low_confidence(0.06) possibly_damaging(0.906) TCGA-EA-A3Y4-01 2 178095888 178095888 G A NFE2L2 Silent p.F481F 0.27 TCGA-EA-A3Y4-01 2 199011871 199011871 C T PLCL1 3'UTR 0.27 TCGA-EA-A3Y4-01 2 233744295 233744295 C G NGEF Missense_Mutation p.Q679H 0.32 deleterious(0) probably_damaging(0.999) TCGA-EA-A3Y4-01 2 242163618 242163618 C G ANO7 3'UTR 0.36 TCGA-EA-A3Y4-01 2 25964764 25964764 G A ASXL2 3'UTR 0.28 TCGA-EA-A3Y4-01 2 29247030 29247030 C T FAM179A Missense_Mutation p.S548F 0.25 deleterious(0) probably_damaging(0.998) TCGA-EA-A3Y4-01 2 70918050 70918050 C T ADD2 Missense_Mutation p.M239I 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-EA-A3Y4-01 2 74688282 74688282 G C MOGS 3'UTR 0.33 TCGA-EA-A3Y4-01 2 80875267 80875267 C T CTNNA2 3'UTR 0.14 TCGA-EA-A3Y4-01 2 98262630 98262630 G C COX5B Silent p.A27A 0.26 TCGA-EA-A3Y4-01 3 113798870 113798870 C G QTRTD1 Missense_Mutation p.F300L 0.19 deleterious(0.01) possibly_damaging(0.747) TCGA-EA-A3Y4-01 3 123419838 123419838 G A MYLK Missense_Mutation p.A826V 0.31 tolerated(0.15) possibly_damaging(0.641) TCGA-EA-A3Y4-01 3 125775433 125775433 C T SLC41A3 Intron 0.24 TCGA-EA-A3Y4-01 3 134670480 134670480 G C EPHB1 Missense_Mutation p.E131Q 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-EA-A3Y4-01 3 15219174 15219174 C T COL6A4P1 RNA 0.23 TCGA-EA-A3Y4-01 3 15219329 15219329 C T COL6A4P1 RNA 0.22 TCGA-EA-A3Y4-01 3 179754389 179754389 C T PEX5L 5'UTR 0.20 TCGA-EA-A3Y4-01 3 184033891 184033891 C G EIF4G1 Intron 0.27 TCGA-EA-A3Y4-01 3 25770649 25770649 C G NGLY1 Missense_Mutation p.R529T 0.35 deleterious(0) probably_damaging(0.999) TCGA-EA-A3Y4-01 3 33094985 33094985 A T GLB1 Missense_Mutation p.L264M 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-EA-A3Y4-01 3 41439743 41439743 C G ULK4 Missense_Mutation p.D1169H 0.14 deleterious(0.03) benign(0.182) TCGA-EA-A3Y4-01 3 9711148 9711148 G T MTMR14 Missense_Mutation p.D176Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-EA-A3Y4-01 4 109000667 109000667 C T LEF1 Missense_Mutation p.D276N 0.25 tolerated(0.19) benign(0.275) TCGA-EA-A3Y4-01 4 118975531 118975531 G C NDST3 Missense_Mutation p.E156Q 0.21 deleterious(0.03) benign(0.077) TCGA-EA-A3Y4-01 4 123850306 123850306 C G SPATA5 Missense_Mutation p.L134V 0.27 tolerated(0.6) benign(0.012) TCGA-EA-A3Y4-01 4 135121193 135121193 C G PABPC4L Missense_Mutation p.E386Q 0.43 tolerated(0.3) possibly_damaging(0.544) TCGA-EA-A3Y4-01 4 66356421 66356421 G A EPHA5 Missense_Mutation p.S359F 0.35 deleterious(0) probably_damaging(0.996) TCGA-EA-A3Y4-01 4 6862786 6862786 A G KIAA0232 Missense_Mutation p.N226S 0.41 tolerated(0.22) benign(0.029) TCGA-EA-A3Y4-01 5 125939337 125939337 C T PHAX Nonsense_Mutation p.R58* 0.35 TCGA-EA-A3Y4-01 5 1344504 1344504 C G CLPTM1L Missense_Mutation p.L75F 0.21 tolerated(0.63) benign(0.02) TCGA-EA-A3Y4-01 5 1344527 1344527 C T CLPTM1L Missense_Mutation p.E68K 0.29 tolerated(0.16) benign(0.042) TCGA-EA-A3Y4-01 5 172115042 172115042 G C NEURL1B 3'UTR 0.30 TCGA-EA-A3Y4-01 5 37727020 37727020 C G WDR70 Missense_Mutation p.L584V 0.51 deleterious(0) probably_damaging(0.967) TCGA-EA-A3Y4-01 5 45645500 45645500 C A HCN1 Silent p.V212V 0.57 TCGA-EA-A3Y4-01 6 109471422 109471422 A C CEP57L1 Missense_Mutation p.N148H 0.21 deleterious(0.02) probably_damaging(0.93) TCGA-EA-A3Y4-01 6 111694699 111694699 C G REV3L Missense_Mutation p.S1620T 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-EA-A3Y4-01 6 121631950 121631950 T C TBC1D32 Missense_Mutation p.Q180R 0.26 tolerated(0.81) benign(0.008) TCGA-EA-A3Y4-01 6 161519323 161519323 C G MAP3K4 Missense_Mutation p.P1180A 0.29 deleterious(0.01) benign(0.08) TCGA-EA-A3Y4-01 6 26216559 26216559 C T HIST1H2BG Missense_Mutation p.G105R 0.22 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EA-A3Y4-01 6 29911061 29911061 G C HLA-A Missense_Mutation p.Q120H 0.43 deleterious_low_confidence(0) benign(0.032) TCGA-EA-A3Y4-01 6 32116549 32116549 G A PRRT1 3'UTR 0.24 TCGA-EA-A3Y4-01 6 32813284 32813284 C G TAP1 3'UTR 0.28 TCGA-EA-A3Y4-01 6 43267781 43267781 T C SLC22A7 Silent p.C268C 0.27 TCGA-EA-A3Y4-01 6 69703686 69703686 G A BAI3 Silent p.Q587Q 0.43 TCGA-EA-A3Y4-01 6 74072594 74072594 G A KHDC3L Missense_Mutation p.E48K 0.24 deleterious(0.05) possibly_damaging(0.861) TCGA-EA-A3Y4-01 7 122787347 122787347 G T SLC13A1 Silent p.T226T 0.24 TCGA-EA-A3Y4-01 7 150913103 150913103 C T ABCF2 Missense_Mutation p.D451N 0.19 tolerated(0.11) benign(0.314) TCGA-EA-A3Y4-01 7 27145913 27145913 G A HOXA3 3'UTR 0.32 TCGA-EA-A3Y4-01 7 31887617 31887617 C G PDE1C Missense_Mutation p.M375I 0.18 deleterious(0.02) possibly_damaging(0.795) TCGA-EA-A3Y4-01 7 48450142 48450142 C A ABCA13 Missense_Mutation p.H4032Q 0.17 probably_damaging(0.999) TCGA-EA-A3Y4-01 7 70255460 70255460 G A AUTS2 Silent p.R1086R 0.25 TCGA-EA-A3Y4-01 7 75988226 75988226 C T YWHAG 5'UTR 0.55 TCGA-EA-A3Y4-01 7 819627 819627 G T HEATR2 Silent p.V759V 0.26 TCGA-EA-A3Y4-01 7 99905525 99905525 C T SPDYE3 Missense_Mutation p.P6L 0.26 tolerated(0.08) benign(0.197) TCGA-EA-A3Y4-01 8 103359135 103359135 G A UBR5 Missense_Mutation p.S191L 0.66 deleterious(0) benign(0.089) TCGA-EA-A3Y4-01 8 117875458 117875458 C T RAD21 Missense_Mutation p.G62E 0.25 deleterious(0) probably_damaging(1) TCGA-EA-A3Y4-01 8 124219598 124219598 C T FAM83A Silent p.S325S 0.18 TCGA-EA-A3Y4-01 8 12882414 12882414 T - KIAA1456 3'UTR 0.65 TCGA-EA-A3Y4-01 8 133919127 133919127 C T TG Nonsense_Mutation p.Q1277* 0.19 TCGA-EA-A3Y4-01 8 139614383 139614383 C G COL22A1 Missense_Mutation p.G1387A 0.06 unknown(0) TCGA-EA-A3Y4-01 8 144994596 144994596 C T PLEC Silent p.L3268L 0.18 TCGA-EA-A3Y4-01 8 144996767 144996767 C G PLEC Missense_Mutation p.D2581H 0.14 probably_damaging(0.984) TCGA-EA-A3Y4-01 8 144997377 144997377 C T PLEC Silent p.L2377L 0.22 TCGA-EA-A3Y4-01 8 144998429 144998429 C T PLEC Missense_Mutation p.D2027N 0.16 unknown(0) TCGA-EA-A3Y4-01 8 145729653 145729653 C G GPT 5'UTR 0.14 TCGA-EA-A3Y4-01 8 35542112 35542112 G T UNC5D Missense_Mutation p.W255L 0.62 deleterious(0) benign(0.18) TCGA-EA-A3Y4-01 8 97311943 97311943 C T PTDSS1 Missense_Mutation p.P208S 0.41 deleterious(0) probably_damaging(1) TCGA-EA-A3Y4-01 8 99719434 99719434 G A STK3 Missense_Mutation p.L181F 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A3Y4-01 9 710904 710904 C G KANK1 Silent p.L46L 0.26 TCGA-EA-A3Y4-01 9 72055996 72055996 G A APBA1 Silent p.I739I 0.33 TCGA-EA-A3Y4-01 9 91606129 91606129 G A C9orf47 Silent p.P73P 0.21 TCGA-EA-A3Y4-01 9 97082512 97082512 G A NUTM2F Missense_Mutation p.S449F 0.27 deleterious(0) probably_damaging(0.997) TCGA-EA-A3Y4-01 X 10202223 10202223 C G CLCN4 3'UTR 0.23 TCGA-EA-A3Y4-01 X 105970628 105970628 G A RNF128 Splice_Site p.X162_splice 0.29 TCGA-EA-A3Y4-01 X 111699135 111699135 A G ZCCHC16 3'UTR 0.22 TCGA-EA-A3Y4-01 X 114427079 114427079 C T RBMXL3 Silent p.L1025L 0.35 TCGA-EA-A3Y4-01 X 120008813 120008813 C T CT47B1 Missense_Mutation p.E238K 0.28 tolerated(0.05) unknown(0) TCGA-EA-A3Y4-01 X 149919523 149919523 C T MTMR1 Intron 0.38 TCGA-EA-A3Y4-01 X 149963742 149963742 C T CD99L2 Missense_Mutation p.D123N 0.23 deleterious(0) probably_damaging(0.955) TCGA-EA-A3Y4-01 X 153594730 153594730 C G FLNA Missense_Mutation p.E392Q 0.24 tolerated(0.08) possibly_damaging(0.53) TCGA-EA-A3Y4-01 X 18662565 18662565 C T RS1 Silent p.Q169Q 0.29 TCGA-EA-A3Y4-01 X 2184871 2184871 G A DHRSX Missense_Mutation p.S169F 0.24 deleterious(0) probably_damaging(0.988) TCGA-EA-A3Y4-01 X 55026966 55026966 C T APEX2 Silent p.D37D 0.24 TCGA-EA-A410-01 10 100186987 100186988 GG - HPS1 Frame_Shift_Del p.P324Hfs*128 0.36 TCGA-EA-A410-01 10 101292902 101292902 G A NKX2-3 Missense_Mutation p.S5N 0.33 deleterious(0) possibly_damaging(0.878) TCGA-EA-A410-01 10 101591885 101591885 C T ABCC2 Silent p.A1085A 0.43 TCGA-EA-A410-01 10 101716868 101716868 G A DNMBP Silent p.V121V 0.38 TCGA-EA-A410-01 10 101911981 101911981 A G ERLIN1 Silent p.D318D 0.12 TCGA-EA-A410-01 10 101950650 101950650 A G CHUK Silent p.N728N 0.24 TCGA-EA-A410-01 10 102897440 102897440 G - TLX1 3'UTR 0.40 TCGA-EA-A410-01 10 103339309 103339309 G A POLL Silent p.C543C 0.40 TCGA-EA-A410-01 10 103587011 103587011 G A KCNIP2 3'Flank 0.38 TCGA-EA-A410-01 10 104162147 104162147 C T NFKB2 3'UTR 0.64 TCGA-EA-A410-01 10 104176689 104176689 G - PSD Frame_Shift_Del p.P36Qfs*28 0.45 TCGA-EA-A410-01 10 104378942 104378942 C T SUFU Intron 0.44 TCGA-EA-A410-01 10 104849528 104849528 A G NT5C2 Silent p.S529S 0.44 TCGA-EA-A410-01 10 105795034 105795034 C T COL17A1 Silent p.S1202S 0.32 TCGA-EA-A410-01 10 111631563 111631563 C T XPNPEP1 Silent p.P503P 0.53 TCGA-EA-A410-01 10 112540631 112540631 T C RBM20 Silent p.S88S 0.07 TCGA-EA-A410-01 10 113910174 113910174 C T GPAM 3'UTR 0.38 TCGA-EA-A410-01 10 115804565 115804565 C T ADRB1 Missense_Mutation p.A225V 0.25 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 10 116624088 116624088 C T FAM160B1 3'UTR 0.38 TCGA-EA-A410-01 10 116719512 116719512 A G TRUB1 Missense_Mutation p.K157E 0.25 tolerated(0.1) benign(0.155) TCGA-EA-A410-01 10 118360710 118360710 G A PNLIPRP1 Missense_Mutation p.A354T 0.45 tolerated(0.43) benign(0.005) TCGA-EA-A410-01 10 118646026 118646026 T C KIAA1598 Silent p.Q575Q 0.39 TCGA-EA-A410-01 10 120867533 120867533 G A FAM45A Missense_Mutation p.A37T 0.48 tolerated(0.22) benign(0.24) TCGA-EA-A410-01 10 12198980 12198980 C T SEC61A2 Missense_Mutation p.R231W 0.31 deleterious(0.03) probably_damaging(0.961) TCGA-EA-A410-01 10 123843261 123843261 G A TACC2 Missense_Mutation p.A416T 0.23 benign(0.003) TCGA-EA-A410-01 10 123844303 123844303 G A TACC2 Missense_Mutation p.R763H 0.64 benign(0.001) TCGA-EA-A410-01 10 124537474 124537474 C T DMBT1P1 RNA 0.29 TCGA-EA-A410-01 10 125506471 125506471 C T CPXM2 Missense_Mutation p.E694K 0.40 deleterious(0.05) benign(0.419) TCGA-EA-A410-01 10 125521472 125521472 C T CPXM2 Missense_Mutation p.A565T 0.38 tolerated(0.64) possibly_damaging(0.597) TCGA-EA-A410-01 10 126308964 126308964 C T FAM53B 3'UTR 0.39 TCGA-EA-A410-01 10 126673772 126673772 A - ZRANB1 3'UTR 0.43 TCGA-EA-A410-01 10 127426976 127426977 - T EDRF1 Frame_Shift_Ins p.E648Dfs*36 0.15 TCGA-EA-A410-01 10 12871236 12871236 A - CAMK1D 3'UTR 0.41 TCGA-EA-A410-01 10 129536881 129536881 G A FOXI2 Silent p.A203A 0.43 TCGA-EA-A410-01 10 129903109 129903109 G A MKI67 Missense_Mutation p.T2332M 0.35 tolerated(0.51) benign(0.001) TCGA-EA-A410-01 10 129906821 129906824 CTTC - MKI67 Frame_Shift_Del p.E1094Rfs*5 0.31 TCGA-EA-A410-01 10 134628225 134628225 G - TTC40 Frame_Shift_Del p.P2405Lfs*5 0.37 TCGA-EA-A410-01 10 134660820 134660820 G A TTC40 Silent p.G1986G 0.43 TCGA-EA-A410-01 10 134686228 134686228 G A TTC40 Missense_Mutation p.S1488L 0.51 deleterious(0) benign(0.128) TCGA-EA-A410-01 10 134755114 134755114 G A TTC40 Missense_Mutation p.P96L 0.36 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 10 134884444 134884444 C T GPR123 Silent p.H4H 0.53 TCGA-EA-A410-01 10 134940796 134940796 A G GPR123 Missense_Mutation p.N154S 0.36 deleterious(0.04) possibly_damaging(0.466) TCGA-EA-A410-01 10 135103605 135103605 C T TUBGCP2 Intron 0.50 TCGA-EA-A410-01 10 135126102 135126102 C T ZNF511 Intron 0.44 TCGA-EA-A410-01 10 135233645 135233645 C - MTG1 Frame_Shift_Del p.P329Rfs*28 0.32 TCGA-EA-A410-01 10 13542012 13542012 G A BEND7 Missense_Mutation p.R20W 0.50 deleterious_low_confidence(0) probably_damaging(1) TCGA-EA-A410-01 10 14884577 14884577 G A HSPA14 Intron 0.44 TCGA-EA-A410-01 10 15326076 15326076 G A FAM171A1 Silent p.D42D 0.29 TCGA-EA-A410-01 10 16990604 16990604 G A CUBN Silent p.G1694G 0.47 TCGA-EA-A410-01 10 18807862 18807862 G A CACNB2 Silent p.A303A 0.42 TCGA-EA-A410-01 10 21962525 21962525 T C MLLT10 Missense_Mutation p.F433S 0.10 tolerated(0.23) possibly_damaging(0.649) TCGA-EA-A410-01 10 22045500 22045500 T A DNAJC1 3'UTR 0.36 TCGA-EA-A410-01 10 27048054 27048054 C T ABI1 Missense_Mutation p.V339M 0.30 deleterious(0) benign(0.302) TCGA-EA-A410-01 10 27702951 27702951 G - PTCHD3 Frame_Shift_Del p.R77Gfs*43 0.32 TCGA-EA-A410-01 10 28023512 28023512 C T MKX Silent p.T237T 0.41 TCGA-EA-A410-01 10 28909145 28909145 T - WAC 3'UTR 0.33 TCGA-EA-A410-01 10 42833122 42833122 G T RP11-313J2.1 RNA 0.36 TCGA-EA-A410-01 10 429984 429984 G A DIP2C Missense_Mutation p.A620V 0.37 tolerated(0.1) probably_damaging(0.984) TCGA-EA-A410-01 10 45869833 45869833 C T ALOX5 Missense_Mutation p.H36Y 0.32 tolerated(0.41) benign(0.124) TCGA-EA-A410-01 10 46322028 46322028 C T AGAP4 Missense_Mutation p.A443T 0.23 deleterious(0.03) probably_damaging(0.987) TCGA-EA-A410-01 10 46999314 46999314 C - GPRIN2 Frame_Shift_Del p.G147Afs*53 0.18 TCGA-EA-A410-01 10 47701176 47701176 C - ANTXRL Frame_Shift_Del p.L586Sfs*15 0.32 TCGA-EA-A410-01 10 48416463 48416463 C T GDF2 Silent p.S77S 0.50 TCGA-EA-A410-01 10 48428944 48428944 G A GDF10 Silent p.H314H 0.36 TCGA-EA-A410-01 10 49367177 49367177 G A FRMPD2 Intron 0.40 TCGA-EA-A410-01 10 49639315 49639315 T C MAPK8 Splice_Site p.X380_splice 0.24 TCGA-EA-A410-01 10 49654487 49654487 A - ARHGAP22 Frame_Shift_Del p.S698Rfs*3 0.30 TCGA-EA-A410-01 10 50315954 50315954 C T VSTM4 Missense_Mutation p.V48I 0.61 tolerated(0.12) benign(0.144) TCGA-EA-A410-01 10 50594854 50594854 G T DRGX Silent p.A100A 0.46 TCGA-EA-A410-01 10 50736549 50736549 G T ERCC6-PGBD3 Missense_Mutation p.T189N 0.39 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-EA-A410-01 10 51754188 51754188 A G AGAP6 Missense_Mutation p.H132R 0.09 deleterious_low_confidence(0.03) benign(0.012) TCGA-EA-A410-01 10 51826430 51826430 C T FAM21A 5'Flank 0.76 TCGA-EA-A410-01 10 52066312 52066312 T - SGMS1 3'UTR 0.17 TCGA-EA-A410-01 10 5499676 5499677 TG - NET1 3'UTR 0.32 TCGA-EA-A410-01 10 55581184 55581184 A G PCDH15 3'UTR 0.39 TCGA-EA-A410-01 10 55912906 55912906 C T PCDH15 Missense_Mutation p.A580T 0.35 tolerated(0.25) benign(0.416) TCGA-EA-A410-01 10 59955856 59955856 C T IPMK Missense_Mutation p.R411Q 0.41 tolerated(1) benign(0.008) TCGA-EA-A410-01 10 60150528 60150528 T A TFAM Missense_Mutation p.L149I 0.42 deleterious(0) probably_damaging(0.988) TCGA-EA-A410-01 10 61549916 61549921 TTTGGT - CCDC6 3'UTR 0.36 TCGA-EA-A410-01 10 61718433 61718433 T - C10orf40 5'UTR 0.42 TCGA-EA-A410-01 10 61823945 61823946 - T ANK3 Frame_Shift_Ins p.W4141Mfs*12 0.30 TCGA-EA-A410-01 10 63759869 63759869 G A ARID5B Silent p.T174T 0.52 TCGA-EA-A410-01 10 63855131 63855131 A - ARID5B 3'UTR 0.32 TCGA-EA-A410-01 10 64567577 64567577 T - ADO 3'UTR 0.29 TCGA-EA-A410-01 10 70931434 70931434 A - VPS26A 3'UTR 0.26 TCGA-EA-A410-01 10 72292391 72292391 C A PALD1 Silent p.A216A 0.56 TCGA-EA-A410-01 10 72326444 72326444 G A PALD1 Silent p.E842E 0.38 TCGA-EA-A410-01 10 73057834 73057835 CT - UNC5B Frame_Shift_Del p.S888Yfs*46 0.37 TCGA-EA-A410-01 10 73330674 73330674 C T CDH23 Missense_Mutation p.P251L 0.44 tolerated(0.32) benign(0.016) TCGA-EA-A410-01 10 75413256 75413256 T C SYNPO2L Missense_Mutation p.Y138C 0.41 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 10 75434724 75434724 C T AGAP5 Missense_Mutation p.R565Q 0.24 tolerated(0.14) benign(0.086) TCGA-EA-A410-01 10 75554320 75554320 G A ZSWIM8 Missense_Mutation p.R944Q 0.43 tolerated(0.19) possibly_damaging(0.901) TCGA-EA-A410-01 10 81074438 81074438 T - ZMIZ1 3'UTR 0.44 TCGA-EA-A410-01 10 81143062 81143062 T - ZCCHC24 3'UTR 0.26 TCGA-EA-A410-01 10 81374783 81374783 T - SFTPA1 3'Flank 0.46 TCGA-EA-A410-01 10 86017689 86017689 G - RGR Frame_Shift_Del p.G229Afs*15 0.45 TCGA-EA-A410-01 10 88683715 88683715 T - BMPR1A 3'UTR 0.35 TCGA-EA-A410-01 10 89717770 89717770 A - PTEN Frame_Shift_Del p.K267Rfs*9 0.46 TCGA-EA-A410-01 10 89725231 89725231 T - PTEN 3'UTR 0.28 TCGA-EA-A410-01 10 89726870 89726870 C T PTEN 3'UTR 0.32 TCGA-EA-A410-01 10 90512461 90512461 A G LIPK Missense_Mutation p.Q383R 0.16 tolerated(0.18) benign(0.012) TCGA-EA-A410-01 10 90537955 90537955 C T LIPN Missense_Mutation p.R385W 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-EA-A410-01 10 90682146 90682146 A - STAMBPL1 Frame_Shift_Del p.K405Rfs*21 0.33 TCGA-EA-A410-01 10 93031442 93031442 C T PCGF5 Silent p.G237G 0.30 TCGA-EA-A410-01 10 93808850 93808850 A - CPEB3 3'Flank 0.41 TCGA-EA-A410-01 10 95123754 95123754 G A MYOF Silent p.G944G 0.24 TCGA-EA-A410-01 10 95353732 95353732 C T RBP4 Missense_Mutation p.R139H 0.50 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 10 95718717 95718717 C T PIPSL RNA 0.36 TCGA-EA-A410-01 10 96466692 96466692 A G CYP2C18 Missense_Mutation p.D265G 0.23 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 10 97916515 97916515 G A ZNF518A RNA 0.39 TCGA-EA-A410-01 10 98715989 98715989 T - LCOR 3'UTR 0.72 TCGA-EA-A410-01 10 99330089 99330089 G A UBTD1 Missense_Mutation p.A165T 0.40 deleterious(0.01) possibly_damaging(0.881) TCGA-EA-A410-01 10 99661269 99661269 C A CRTAC1 Missense_Mutation p.R375L 0.24 tolerated(0.12) benign(0.018) TCGA-EA-A410-01 11 1017124 1017124 G T MUC6 Missense_Mutation p.P1893T 0.10 probably_damaging(0.987) TCGA-EA-A410-01 11 101771219 101771219 C T ANGPTL5 Silent p.G201G 0.39 TCGA-EA-A410-01 11 103908159 103908159 C T DDI1 Silent p.A203A 0.47 TCGA-EA-A410-01 11 104869729 104869729 C A CASP5 Missense_Mutation p.D340Y 0.41 deleterious(0.01) benign(0.387) TCGA-EA-A410-01 11 105850989 105850989 A G GRIA4 3'UTR 0.46 TCGA-EA-A410-01 11 106579341 106579341 G A GUCY1A2 Nonsense_Mutation p.R661* 0.30 TCGA-EA-A410-01 11 106810531 106810531 G A GUCY1A2 Silent p.S287S 0.28 TCGA-EA-A410-01 11 107978173 107978173 C T CUL5 3'UTR 0.34 TCGA-EA-A410-01 11 108385451 108385451 T - EXPH5 Frame_Shift_Del p.K261Nfs*15 0.29 TCGA-EA-A410-01 11 110023712 110023712 G A ZC3H12C Missense_Mutation p.G281D 0.36 deleterious(0) probably_damaging(0.938) TCGA-EA-A410-01 11 111953143 111953144 - T C11orf57 Intron 0.31 TCGA-EA-A410-01 11 113235613 113235613 G A TTC12 Missense_Mutation p.A625T 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-EA-A410-01 11 1155591 1155591 C T MUC5AC Silent p.D93D 0.38 TCGA-EA-A410-01 11 116707831 116707832 - G APOA1 Frame_Shift_Ins p.Q29Pfs*30 0.24 TCGA-EA-A410-01 11 116730109 116730109 G A SIK3 Silent p.R773R 0.33 TCGA-EA-A410-01 11 116827776 116827776 G T SIK3 Missense_Mutation p.A35D 0.29 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 11 117109461 117109461 G A RNF214 Silent p.A84A 0.39 TCGA-EA-A410-01 11 117253625 117253625 C T CEP164 Missense_Mutation p.A564V 0.41 tolerated(0.33) benign(0.009) TCGA-EA-A410-01 11 117262984 117262984 C T CEP164 Missense_Mutation p.R776W 0.37 deleterious(0.01) benign(0.109) TCGA-EA-A410-01 11 117389247 117389247 C T DSCAML1 Missense_Mutation p.V542M 0.42 deleterious(0.04) probably_damaging(0.987) TCGA-EA-A410-01 11 117973922 117973922 C T TMPRSS4 Silent p.D88D 0.42 TCGA-EA-A410-01 11 118402939 118402939 G A TMEM25 Missense_Mutation p.A49T 0.47 tolerated(0.58) benign(0.008) TCGA-EA-A410-01 11 118406053 118406053 C T TMEM25 3'UTR 0.36 TCGA-EA-A410-01 11 118620974 118620974 A - DDX6 3'UTR 0.37 TCGA-EA-A410-01 11 118766539 118766539 T C BCL9L 3'UTR 0.44 TCGA-EA-A410-01 11 118766913 118766913 G C BCL9L 3'UTR 0.46 TCGA-EA-A410-01 11 118925330 118925330 C T HYOU1 Missense_Mutation p.R185H 0.50 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 11 118969143 118969143 A - DPAGT1 Frame_Shift_Del p.F233Sfs*28 0.41 TCGA-EA-A410-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.37 TCGA-EA-A410-01 11 119531810 119531810 C T PVRL1 3'UTR 0.45 TCGA-EA-A410-01 11 120198204 120198204 G A TMEM136 Silent p.S40S 0.41 TCGA-EA-A410-01 11 121460778 121460778 C T SORL1 Missense_Mutation p.R1370C 0.49 deleterious(0) possibly_damaging(0.832) TCGA-EA-A410-01 11 124253169 124253169 C T OR8B2 Missense_Mutation p.R24Q 0.15 tolerated_low_confidence(1) benign(0) TCGA-EA-A410-01 11 126137082 126137082 C - SRPR Frame_Shift_Del p.A172Pfs*31 0.36 TCGA-EA-A410-01 11 126213239 126213239 G - DCPS Frame_Shift_Del p.G226Afs*33 0.33 TCGA-EA-A410-01 11 1268674 1268674 C - MUC5B Frame_Shift_Del p.P3523Lfs*41 0.24 TCGA-EA-A410-01 11 128840324 128840324 C T ARHGAP32 Missense_Mutation p.R1581Q 0.33 deleterious(0) probably_damaging(0.99) TCGA-EA-A410-01 11 128844223 128844223 C T ARHGAP32 Missense_Mutation p.V943I 0.44 tolerated_low_confidence(0.75) benign(0.002) TCGA-EA-A410-01 11 129306827 129306827 G A BARX2 Silent p.T123T 0.43 TCGA-EA-A410-01 11 130003569 130003570 CT - APLP2 Frame_Shift_Del p.L546Afs*16 0.39 TCGA-EA-A410-01 11 132527182 132527182 G A OPCML Missense_Mutation p.A67V 0.29 deleterious(0) probably_damaging(0.996) TCGA-EA-A410-01 11 134074855 134074855 T A NCAPD3 Missense_Mutation p.D343V 0.32 deleterious(0) benign(0.421) TCGA-EA-A410-01 11 17419331 17419331 G A ABCC8 Missense_Mutation p.A1256V 0.38 deleterious(0) possibly_damaging(0.57) TCGA-EA-A410-01 11 18422434 18422434 C T LDHA Missense_Mutation p.R128C 0.41 tolerated(0.15) possibly_damaging(0.573) TCGA-EA-A410-01 11 18723413 18723413 G A TMEM86A Missense_Mutation p.A194T 0.32 deleterious(0) possibly_damaging(0.907) TCGA-EA-A410-01 11 18751286 18751286 G - PTPN5 Frame_Shift_Del p.P470Hfs*56 0.29 TCGA-EA-A410-01 11 203688 203688 G T BET1L 3'UTR 0.50 TCGA-EA-A410-01 11 2424288 2424288 G A TSSC4 Missense_Mutation p.R142Q 0.14 tolerated(0.65) benign(0.001) TCGA-EA-A410-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.36 TCGA-EA-A410-01 11 30253535 30253535 C A FSHB Missense_Mutation p.A29E 0.38 deleterious(0.03) possibly_damaging(0.612) TCGA-EA-A410-01 11 3050234 3050234 G A CARS Silent p.N341N 0.38 TCGA-EA-A410-01 11 30921190 30921190 C T DCDC1 Splice_Site p.X1552_splice 0.53 TCGA-EA-A410-01 11 32623974 32623975 - A EIF3M 3'UTR 0.50 TCGA-EA-A410-01 11 33124703 33124703 T - CSTF3 Frame_Shift_Del p.M205* 0.25 TCGA-EA-A410-01 11 34162010 34162010 A G NAT10 Missense_Mutation p.Y828C 0.40 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 11 3428648 3428648 G A TSSC2 RNA 0.24 TCGA-EA-A410-01 11 35489561 35489561 G A PAMR1 Missense_Mutation p.R270C 0.41 deleterious(0.04) possibly_damaging(0.562) TCGA-EA-A410-01 11 3784168 3784169 AA - NUP98 Frame_Shift_Del p.F350Wfs*18 0.33 TCGA-EA-A410-01 11 421010 421010 G A ANO9 Silent p.F475F 0.63 TCGA-EA-A410-01 11 43465021 43465021 C T TTC17 Missense_Mutation p.R800W 0.33 deleterious(0.01) probably_damaging(0.928) TCGA-EA-A410-01 11 43469611 43469611 C T TTC17 Missense_Mutation p.R909C 0.39 deleterious(0) probably_damaging(0.939) TCGA-EA-A410-01 11 43471750 43471750 C T TTC17 Nonsense_Mutation p.R969* 0.30 TCGA-EA-A410-01 11 44296954 44296954 C T ALX4 Missense_Mutation p.V241M 0.47 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 11 46564575 46564575 G - AMBRA1 Intron 0.29 TCGA-EA-A410-01 11 46726784 46726784 C T ZNF408 Missense_Mutation p.R512C 0.30 deleterious(0) probably_damaging(0.966) TCGA-EA-A410-01 11 46832604 46832604 T C CKAP5 Missense_Mutation p.I195V 0.52 tolerated(0.16) benign(0.081) TCGA-EA-A410-01 11 46916347 46916347 C T LRP4 Missense_Mutation p.A445T 0.47 deleterious(0.05) possibly_damaging(0.788) TCGA-EA-A410-01 11 47193049 47193049 T G ARFGAP2 Missense_Mutation p.K290T 0.08 deleterious(0.05) possibly_damaging(0.833) TCGA-EA-A410-01 11 47437744 47437744 G A SLC39A13 3'UTR 0.34 TCGA-EA-A410-01 11 47459495 47459495 C T RAPSN 3'UTR 0.43 TCGA-EA-A410-01 11 47862069 47862069 C T NUP160 Missense_Mutation p.R129H 0.32 deleterious(0.02) benign(0.079) TCGA-EA-A410-01 11 499870 499870 G A RNH1 Silent p.C134C 0.36 TCGA-EA-A410-01 11 5322570 5322570 T C OR51B4 Missense_Mutation p.T203A 0.41 deleterious(0.02) benign(0.029) TCGA-EA-A410-01 11 5529358 5529358 C T UBQLN3 Silent p.L477L 0.44 TCGA-EA-A410-01 11 56409117 56409117 G A OR5AP2 Missense_Mutation p.R267C 0.36 deleterious(0.01) probably_damaging(0.971) TCGA-EA-A410-01 11 56431862 56431862 G A OR5AR1 Missense_Mutation p.R234H 0.38 deleterious(0.02) benign(0.022) TCGA-EA-A410-01 11 56949436 56949436 C T LRRC55 Silent p.L23L 0.26 TCGA-EA-A410-01 11 57155247 57155247 C T PRG2 Missense_Mutation p.C197Y 0.43 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 11 57258707 57258707 C T SLC43A1 Missense_Mutation p.G395R 0.38 tolerated(0.33) benign(0.059) TCGA-EA-A410-01 11 57467845 57467845 T - ZDHHC5 3'UTR 0.54 TCGA-EA-A410-01 11 57472624 57472624 T C MED19 Missense_Mutation p.K99E 0.47 deleterious(0) probably_damaging(0.98) TCGA-EA-A410-01 11 57584216 57584217 - T CTNND1 3'UTR 0.39 TCGA-EA-A410-01 11 57947252 57947252 C T OR9Q1 Silent p.C112C 0.06 TCGA-EA-A410-01 11 58891908 58891908 C T FAM111B Missense_Mutation p.A113V 0.36 deleterious(0.02) possibly_damaging(0.794) TCGA-EA-A410-01 11 58958609 58958609 A - DTX4 Frame_Shift_Del p.K396Nfs*34 0.30 TCGA-EA-A410-01 11 59419990 59419990 C T PATL1 Missense_Mutation p.R458H 0.23 tolerated(0.36) benign(0.037) TCGA-EA-A410-01 11 60615410 60615410 C T CCDC86 Missense_Mutation p.L258F 0.46 deleterious(0.01) benign(0.263) TCGA-EA-A410-01 11 60671319 60671319 G A PRPF19 Missense_Mutation p.P12S 0.40 deleterious(0.01) probably_damaging(0.939) TCGA-EA-A410-01 11 608689 608689 G T PHRF1 Missense_Mutation p.R1077M 0.29 deleterious(0) probably_damaging(0.919) TCGA-EA-A410-01 11 61026164 61026164 C - VWCE Frame_Shift_Del p.E951Kfs*33 0.32 TCGA-EA-A410-01 11 61171851 61171851 G A CPSF7 3'UTR 0.43 TCGA-EA-A410-01 11 61511956 61511956 C T DAGLA Missense_Mutation p.R1042C 0.27 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-EA-A410-01 11 61539013 61539013 C - MYRF Frame_Shift_Del p.S264Afs*8 0.47 TCGA-EA-A410-01 11 61578343 61578343 G - FADS1 Frame_Shift_Del p.A266Pfs*60 0.32 TCGA-EA-A410-01 11 61664841 61664841 G - RAB3IL1 3'UTR 0.33 TCGA-EA-A410-01 11 617414 617414 G A CDHR5 Silent p.G825G 0.59 TCGA-EA-A410-01 11 62297596 62297596 G A AHNAK Silent p.D1431D 0.36 TCGA-EA-A410-01 11 62381769 62381770 - G ROM1 Frame_Shift_Ins p.V212Gfs*44 0.27 TCGA-EA-A410-01 11 62384255 62384255 C T B3GAT3 Missense_Mutation p.R211H 0.53 deleterious(0.03) benign(0.006) TCGA-EA-A410-01 11 63313709 63313709 A - RARRES3 Frame_Shift_Del p.A162Rfs*56 0.37 TCGA-EA-A410-01 11 63595175 63595175 T - C11orf84 3'UTR 0.35 TCGA-EA-A410-01 11 63885113 63885113 G A FLRT1 Silent p.T458T 0.22 TCGA-EA-A410-01 11 64030219 64030219 G A PLCB3 Missense_Mutation p.R765Q 0.45 deleterious(0) benign(0.109) TCGA-EA-A410-01 11 64033403 64033403 G T PLCB3 Missense_Mutation p.E1027D 0.28 tolerated(0.58) benign(0.005) TCGA-EA-A410-01 11 64116326 64116327 - C CCDC88B Intron 0.34 TCGA-EA-A410-01 11 6431941 6431941 G A APBB1 Missense_Mutation p.R213W 0.36 deleterious(0.01) probably_damaging(0.951) TCGA-EA-A410-01 11 64419551 64419551 C T NRXN2 Missense_Mutation p.R831H 0.46 deleterious(0) probably_damaging(0.938) TCGA-EA-A410-01 11 64536711 64536711 G A SF1 Missense_Mutation p.R380W 0.25 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 11 64606586 64606586 G A CDC42BPG Silent p.C265C 0.49 TCGA-EA-A410-01 11 64606655 64606655 G A CDC42BPG Silent p.I242I 0.31 TCGA-EA-A410-01 11 64940672 64940672 C T SPDYC Missense_Mutation p.A289V 0.39 tolerated_low_confidence(0.19) benign(0.011) TCGA-EA-A410-01 11 65351791 65351791 G A EHBP1L1 Missense_Mutation p.R1058H 0.29 deleterious(0.01) benign(0.252) TCGA-EA-A410-01 11 65617623 65617623 C - SNX32 Frame_Shift_Del p.P87Qfs*33 0.35 TCGA-EA-A410-01 11 6568873 6568875 AGG - DNHD1 In_Frame_Del p.E2237del 0.53 TCGA-EA-A410-01 11 66001403 66001403 C - PACS1 Frame_Shift_Del p.L664Sfs*47 0.34 TCGA-EA-A410-01 11 66249801 66249801 G A DPP3 Missense_Mutation p.G44R 0.23 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 11 66264785 66264785 G A DPP3 Missense_Mutation p.R572Q 0.42 deleterious(0) probably_damaging(0.969) TCGA-EA-A410-01 11 6643076 6643076 G A DCHS1 Silent p.P3277P 0.37 TCGA-EA-A410-01 11 66456226 66456226 G A SPTBN2 Silent p.C2043C 0.25 TCGA-EA-A410-01 11 66458802 66458802 G A SPTBN2 Missense_Mutation p.R1840C 0.39 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 11 66468125 66468125 C T SPTBN2 Missense_Mutation p.A1149T 0.44 deleterious(0.02) probably_damaging(0.997) TCGA-EA-A410-01 11 6648536 6648536 G A DCHS1 Missense_Mutation p.R1912C 0.26 tolerated(0.16) possibly_damaging(0.69) TCGA-EA-A410-01 11 6653432 6653432 C T DCHS1 Missense_Mutation p.R1104H 0.43 tolerated(0.2) benign(0.032) TCGA-EA-A410-01 11 6654117 6654117 C T DCHS1 Missense_Mutation p.A876T 0.38 tolerated(0.2) benign(0.291) TCGA-EA-A410-01 11 6662325 6662325 G A DCHS1 Missense_Mutation p.R174C 0.32 deleterious(0.01) possibly_damaging(0.67) TCGA-EA-A410-01 11 66638631 66638631 C T PC Silent p.T175T 0.44 TCGA-EA-A410-01 11 66639216 66639216 C T PC Missense_Mutation p.R88H 0.34 deleterious(0.01) benign(0.023) TCGA-EA-A410-01 11 67053894 67053894 C - ADRBK1 3'UTR 0.42 TCGA-EA-A410-01 11 67119283 67119283 G A POLD4 3'UTR 0.42 TCGA-EA-A410-01 11 67191150 67191150 C T CARNS1 Missense_Mutation p.A644V 0.29 tolerated(0.17) benign(0.062) TCGA-EA-A410-01 11 67205812 67205812 G A CORO1B 3'UTR 0.50 TCGA-EA-A410-01 11 67261172 67261172 C T PITPNM1 Missense_Mutation p.V1049M 0.53 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 11 67269433 67269433 C T PITPNM1 Silent p.A180A 0.62 TCGA-EA-A410-01 11 67402373 67402373 G - TBX10 Frame_Shift_Del p.F98Sfs*3 0.34 TCGA-EA-A410-01 11 67432003 67432003 G A ALDH3B2 Missense_Mutation p.T246M 0.44 tolerated(0.07) benign(0.15) TCGA-EA-A410-01 11 67656272 67656272 C T RP11-119D9.1 RNA 0.49 TCGA-EA-A410-01 11 67924078 67924078 T C SUV420H1 3'UTR 0.41 TCGA-EA-A410-01 11 67939086 67939086 G A SUV420H1 Silent p.N248N 0.25 TCGA-EA-A410-01 11 68201306 68201306 G T LRP5 Missense_Mutation p.A1334S 0.14 tolerated(0.25) benign(0.026) TCGA-EA-A410-01 11 68517872 68517872 C - MTL5 Frame_Shift_Del p.G86Afs*70 0.32 TCGA-EA-A410-01 11 68696803 68696803 C - IGHMBP2 Frame_Shift_Del p.T407Pfs*16 0.24 TCGA-EA-A410-01 11 70178191 70178191 G A PPFIA1 Silent p.A401A 0.41 TCGA-EA-A410-01 11 70279803 70279803 G A CTTN Missense_Mutation p.A462T 0.28 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 11 726965 726965 G - EPS8L2 Frame_Shift_Del p.E713Rfs*114 0.30 TCGA-EA-A410-01 11 73021101 73021101 C T ARHGEF17 Missense_Mutation p.T473M 0.36 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EA-A410-01 11 73689124 73689125 CT - UCP2 Frame_Shift_Del p.Q48Rfs*25 0.26 TCGA-EA-A410-01 11 75277916 75277916 C T SERPINH1 Silent p.N174N 0.44 TCGA-EA-A410-01 11 767336 767336 C A PDDC1 3'UTR 0.39 TCGA-EA-A410-01 11 7676690 7676690 G A PPFIBP2 3'Flank 0.37 TCGA-EA-A410-01 11 77553643 77553643 G A AAMDC Missense_Mutation p.R34Q 0.47 deleterious(0.03) benign(0.329) TCGA-EA-A410-01 11 77590038 77590038 T G INTS4 Missense_Mutation p.K950T 0.38 deleterious(0.01) possibly_damaging(0.864) TCGA-EA-A410-01 11 78600945 78600945 G A TENM4 Silent p.F323F 0.21 TCGA-EA-A410-01 11 7960718 7960718 G A OR10A3 Missense_Mutation p.A117V 0.33 tolerated(0.77) benign(0.035) TCGA-EA-A410-01 11 7982823 7982823 C T NLRP10 Nonsense_Mutation p.W112* 0.39 TCGA-EA-A410-01 11 82879668 82879668 G A PCF11 Missense_Mutation p.G764D 0.35 deleterious(0.04) possibly_damaging(0.649) TCGA-EA-A410-01 11 8734190 8734190 G T ST5 Silent p.R694R 0.47 TCGA-EA-A410-01 11 88911534 88911534 T C TYR Missense_Mutation p.L138P 0.58 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 11 8941195 8941195 T - AKIP1 3'UTR 0.46 TCGA-EA-A410-01 11 89444611 89444611 A - TRIM77 Frame_Shift_Del p.K151Nfs*8 0.37 TCGA-EA-A410-01 11 89644725 89644725 C A TRIM49D1 3'UTR 0.36 TCGA-EA-A410-01 11 92917602 92917602 G A SLC36A4 Silent p.G88G 0.34 TCGA-EA-A410-01 11 9308018 9308018 A - TMEM41B Frame_Shift_Del p.F230Lfs*6 0.21 TCGA-EA-A410-01 11 94189498 94189498 G A MRE11A Missense_Mutation p.R503C 0.62 tolerated(0.08) benign(0.015) TCGA-EA-A410-01 11 94923125 94923125 C T SESN3 Missense_Mutation p.A115T 0.50 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 12 100708351 100708351 T - SCYL2 Frame_Shift_Del p.F353Sfs*24 0.25 TCGA-EA-A410-01 12 101368614 101368614 T C ANO4 Intron 0.26 TCGA-EA-A410-01 12 101705996 101705996 C A UTP20 Missense_Mutation p.P832T 0.43 deleterious(0.05) benign(0.285) TCGA-EA-A410-01 12 102043130 102043130 C T MYBPC1 Missense_Mutation p.A405V 0.34 tolerated(0.27) benign(0.422) TCGA-EA-A410-01 12 102576370 102576370 C T PARPBP Missense_Mutation p.R410C 0.47 deleterious(0.04) benign(0.394) TCGA-EA-A410-01 12 104732920 104732920 C T TXNRD1 Missense_Mutation p.R584C 0.42 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 12 107279955 107279955 T - RIC8B 3'UTR 0.32 TCGA-EA-A410-01 12 10772833 10772833 T A STYK1 Missense_Mutation p.L393F 0.48 deleterious(0.01) benign(0.172) TCGA-EA-A410-01 12 107974742 107974742 C A BTBD11 Intron 0.32 TCGA-EA-A410-01 12 108052437 108052437 A G BTBD11 3'UTR 0.50 TCGA-EA-A410-01 12 109042575 109042575 C T CORO1C Missense_Mutation p.A371T 0.35 deleterious(0.02) probably_damaging(0.968) TCGA-EA-A410-01 12 109609625 109609625 C T ACACB Missense_Mutation p.A314V 0.28 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 12 109694034 109694034 C T ACACB Nonsense_Mutation p.R2086* 0.36 TCGA-EA-A410-01 12 109853357 109853357 G A MYO1H Missense_Mutation p.R494Q 0.35 tolerated(0.22) benign(0.017) TCGA-EA-A410-01 12 110969249 110969249 G A RAD9B Intron 0.43 TCGA-EA-A410-01 12 111078283 111078283 C T TCTN1 Silent p.N313N 0.40 TCGA-EA-A410-01 12 11214210 11214210 C T TAS2R46 Silent p.L228L 0.35 TCGA-EA-A410-01 12 112147336 112147336 G C ACAD10 Missense_Mutation p.E180Q 0.52 deleterious(0.04) probably_damaging(0.994) TCGA-EA-A410-01 12 112219734 112219734 A G ALDH2 Missense_Mutation p.N43D 0.37 deleterious(0.01) probably_damaging(0.963) TCGA-EA-A410-01 12 113306117 113306117 G T RPH3A Intron 0.29 TCGA-EA-A410-01 12 113369736 113369736 C T RP1-71H24.1 Intron 0.30 TCGA-EA-A410-01 12 113616798 113616798 T A DDX54 Missense_Mutation p.I200F 0.27 deleterious(0) probably_damaging(0.979) TCGA-EA-A410-01 12 113758272 113758272 G A SLC8B1 Silent p.A186A 0.30 TCGA-EA-A410-01 12 116397436 116397437 AT - MED13L 3'UTR 0.31 TCGA-EA-A410-01 12 118675938 118675938 G A TAOK3 Missense_Mutation p.A126V 0.24 deleterious(0.03) possibly_damaging(0.815) TCGA-EA-A410-01 12 119419656 119419656 G A SRRM4 5'UTR 0.34 TCGA-EA-A410-01 12 120510532 120510532 C T CCDC64 Missense_Mutation p.T436M 0.29 deleterious(0.01) benign(0.282) TCGA-EA-A410-01 12 120512369 120512369 G A CCDC64 Intron 0.47 TCGA-EA-A410-01 12 120576582 120576582 C T GCN1L1 Missense_Mutation p.A2025T 0.38 probably_damaging(0.972) TCGA-EA-A410-01 12 120651995 120651995 G A PXN Missense_Mutation p.T449M 0.39 deleterious(0) probably_damaging(0.975) TCGA-EA-A410-01 12 121426820 121426820 C T HNF1A Nonsense_Mutation p.R171* 0.56 TCGA-EA-A410-01 12 121471432 121471432 G T OASL Missense_Mutation p.L105M 0.43 deleterious(0.01) probably_damaging(0.914) TCGA-EA-A410-01 12 121861315 121861315 G A RNF34 Missense_Mutation p.R353H 0.40 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 12 122396269 122396269 G C WDR66 Missense_Mutation p.A608P 0.42 tolerated(0.13) benign(0.168) TCGA-EA-A410-01 12 122406019 122406019 C T WDR66 Silent p.Y905Y 0.38 TCGA-EA-A410-01 12 122701310 122701310 G A DIABLO Missense_Mutation p.A141V 0.36 tolerated(1) benign(0) TCGA-EA-A410-01 12 122709075 122709075 G A DIABLO Missense_Mutation p.A56V 0.37 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 12 12273985 12273985 C - LRP6 3'UTR 0.29 TCGA-EA-A410-01 12 12337042 12337042 G A LRP6 Missense_Mutation p.T283I 0.56 tolerated(0.19) benign(0.018) TCGA-EA-A410-01 12 123489809 123489809 C T PITPNM2 Silent p.S310S 0.34 TCGA-EA-A410-01 12 12629933 12629933 C T DUSP16 Missense_Mutation p.R611Q 0.36 tolerated(0.08) probably_damaging(0.922) TCGA-EA-A410-01 12 13065979 13065979 C T GPRC5A 3'UTR 0.28 TCGA-EA-A410-01 12 130882590 130882590 A - RIMBP2 3'UTR 0.72 TCGA-EA-A410-01 12 131590407 131590407 C T GPR133 Silent p.G628G 0.32 TCGA-EA-A410-01 12 132334490 132334490 C T MMP17 Silent p.L450L 0.43 TCGA-EA-A410-01 12 132445485 132445485 C T EP400 Silent p.S107S 0.26 TCGA-EA-A410-01 12 132505799 132505799 C T EP400 Silent p.H1541H 0.29 TCGA-EA-A410-01 12 133803023 133803023 C A ANHX Missense_Mutation p.E240D 0.38 tolerated(0.55) benign(0.013) TCGA-EA-A410-01 12 14634037 14634037 T G ATF7IP Silent p.T1066T 0.22 TCGA-EA-A410-01 12 15803891 15803891 G A EPS8 Missense_Mutation p.R434C 0.39 deleterious(0) probably_damaging(0.985) TCGA-EA-A410-01 12 19514518 19514518 A - PLEKHA5 Frame_Shift_Del p.T1165Lfs*17 0.29 TCGA-EA-A410-01 12 24737079 24737079 C T LINC00477 RNA 0.38 TCGA-EA-A410-01 12 32137409 32137409 G A KIAA1551 Missense_Mutation p.A1174T 0.38 deleterious(0.02) possibly_damaging(0.536) TCGA-EA-A410-01 12 3395558 3395558 C - TSPAN9 3'UTR 0.29 TCGA-EA-A410-01 12 39705235 39705237 GAG - KIF21A In_Frame_Del p.L1360del 0.43 TCGA-EA-A410-01 12 41831725 41831726 CT - PDZRN4 Intron 0.33 TCGA-EA-A410-01 12 45814929 45814929 G A ANO6 Missense_Mutation p.G786R 0.38 deleterious(0.05) possibly_damaging(0.861) TCGA-EA-A410-01 12 46318572 46318572 G - SCAF11 Frame_Shift_Del p.P1282Lfs*29 0.38 TCGA-EA-A410-01 12 4634423 4634423 A G C12orf4 Missense_Mutation p.L242P 0.40 deleterious(0.01) possibly_damaging(0.748) TCGA-EA-A410-01 12 47159139 47159139 C T SLC38A4 3'UTR 0.29 TCGA-EA-A410-01 12 47628963 47628963 G T PCED1B Missense_Mutation p.K39N 0.34 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 12 48179603 48179603 C A HDAC7 Missense_Mutation p.G880C 0.28 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 12 49054363 49054363 C T KANSL2 Missense_Mutation p.C338Y 0.42 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 12 49161719 49161719 G T ADCY6 3'UTR 0.44 TCGA-EA-A410-01 12 4919976 4919976 T C KCNA6 Missense_Mutation p.S257P 0.41 tolerated(0.38) benign(0.369) TCGA-EA-A410-01 12 4923620 4923620 C A KCNA6 3'UTR 0.30 TCGA-EA-A410-01 12 49413581 49413581 A - KMT2D 3'UTR 0.61 TCGA-EA-A410-01 12 49420204 49420204 C - KMT2D Frame_Shift_Del p.G5182Afs*61 0.33 TCGA-EA-A410-01 12 49426509 49426509 C T KMT2D Silent p.Q3993Q 0.12 TCGA-EA-A410-01 12 5025498 5025498 C T KCNA1 3'UTR 0.39 TCGA-EA-A410-01 12 50476601 50476601 G A ASIC1 3'UTR 0.35 TCGA-EA-A410-01 12 50745864 50745864 G A FAM186A Missense_Mutation p.A1584V 0.32 tolerated(0.16) benign(0.129) TCGA-EA-A410-01 12 50747820 50747821 - T FAM186A Frame_Shift_Ins p.M932Nfs*65 0.32 TCGA-EA-A410-01 12 51888827 51888827 C A SLC4A8 Silent p.T956T 0.42 TCGA-EA-A410-01 12 52202298 52202298 A - SCN8A 3'UTR 0.45 TCGA-EA-A410-01 12 52309235 52309235 C T ACVRL1 Silent p.S333S 0.28 TCGA-EA-A410-01 12 52788668 52788668 T G KRT82 3'UTR 0.25 TCGA-EA-A410-01 12 52827647 52827647 C T KRT75 Missense_Mutation p.E148K 0.39 deleterious(0) probably_damaging(0.952) TCGA-EA-A410-01 12 52940271 52940271 G A KRT71 Missense_Mutation p.A375V 0.31 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 12 53433404 53433404 G A EIF4B Intron 0.29 TCGA-EA-A410-01 12 53805536 53805536 T - SP1 3'Flank 0.47 TCGA-EA-A410-01 12 54428140 54428140 G A HOXC5 Missense_Mutation p.R178H 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-EA-A410-01 12 54763562 54763562 G A ZNF385A 3'UTR 0.48 TCGA-EA-A410-01 12 55714989 55714989 G A OR6C1 Silent p.A202A 0.37 TCGA-EA-A410-01 12 56078934 56078934 G - ITGA7 Frame_Shift_Del p.R1112Gfs*115 0.32 TCGA-EA-A410-01 12 56214844 56214844 A - DNAJC14 3'UTR 0.49 TCGA-EA-A410-01 12 56222210 56222210 G - DNAJC14 Frame_Shift_Del p.P78Qfs*178 0.29 TCGA-EA-A410-01 12 56388470 56388470 A - RAB5B 3'UTR 0.39 TCGA-EA-A410-01 12 56572604 56572604 G A SMARCC2 Missense_Mutation p.T390M 0.57 tolerated(0.07) benign(0.105) TCGA-EA-A410-01 12 57003601 57003601 G A BAZ2A Nonsense_Mutation p.R673* 0.48 TCGA-EA-A410-01 12 57350962 57350962 C T RDH16 Silent p.Q95Q 0.39 TCGA-EA-A410-01 12 57396636 57396636 G - ZBTB39 Frame_Shift_Del p.P689Lfs*42 0.38 TCGA-EA-A410-01 12 58130923 58130923 G - AGAP2 Frame_Shift_Del p.S370Afs*23 0.30 TCGA-EA-A410-01 12 58163106 58163106 G A METTL1 Missense_Mutation p.R219C 0.37 deleterious(0) possibly_damaging(0.893) TCGA-EA-A410-01 12 63042339 63042339 T C PPM1H Missense_Mutation p.D492G 0.41 tolerated(0.13) possibly_damaging(0.686) TCGA-EA-A410-01 12 6439098 6439098 G - TNFRSF1A Frame_Shift_Del p.G302Vfs*50 0.40 TCGA-EA-A410-01 12 64812755 64812755 T - XPOT Frame_Shift_Del p.F126Lfs*6 0.52 TCGA-EA-A410-01 12 64883856 64883856 C T TBK1 Missense_Mutation p.A493V 0.54 tolerated(0.3) benign(0.001) TCGA-EA-A410-01 12 6499901 6499902 - G LTBR Frame_Shift_Ins p.P372Tfs*53 0.26 TCGA-EA-A410-01 12 65268778 65268781 CAGA - TBC1D30 Splice_Site p.X500_splice 0.43 TCGA-EA-A410-01 12 65269557 65269557 A - TBC1D30 Frame_Shift_Del p.K760Nfs*? 0.36 TCGA-EA-A410-01 12 66610954 66610954 A - IRAK3 Frame_Shift_Del p.M200Cfs*26 0.31 TCGA-EA-A410-01 12 6711546 6711546 T - CHD4 Frame_Shift_Del p.K73Rfs*129 0.27 TCGA-EA-A410-01 12 6729304 6729304 C T LPAR5 Missense_Mutation p.A371T 0.44 tolerated_low_confidence(0.14) benign(0.001) TCGA-EA-A410-01 12 6730270 6730270 G A LPAR5 Missense_Mutation p.R49C 0.42 tolerated(0.28) possibly_damaging(0.747) TCGA-EA-A410-01 12 6754405 6754405 G - ACRBP Frame_Shift_Del p.I153Sfs*7 0.29 TCGA-EA-A410-01 12 68054142 68054142 A - DYRK2 3'UTR 0.38 TCGA-EA-A410-01 12 68056018 68056018 A - DYRK2 3'UTR 0.30 TCGA-EA-A410-01 12 70188991 70188991 C T RAB3IP Missense_Mutation p.T268M 0.41 tolerated(0.1) benign(0.022) TCGA-EA-A410-01 12 7047857 7047857 G C ATN1 Missense_Mutation p.V911L 0.33 benign(0.42) TCGA-EA-A410-01 12 71286727 71286727 A - PTPRR Frame_Shift_Del p.L30Wfs*27 0.30 TCGA-EA-A410-01 12 72080283 72080283 C T TMEM19 5'UTR 0.46 TCGA-EA-A410-01 12 73057058 73057058 C A TRHDE 3'UTR 0.33 TCGA-EA-A410-01 12 75444985 75444985 C T KCNC2 Missense_Mutation p.G267D 0.32 tolerated(0.33) benign(0.009) TCGA-EA-A410-01 12 77449827 77449827 T - E2F7 Frame_Shift_Del p.K59Nfs*29 0.33 TCGA-EA-A410-01 12 83526122 83526123 TG - TMTC2 Frame_Shift_Del p.W823Efs*12 0.42 TCGA-EA-A410-01 12 8688760 8688760 A - CLEC4E Frame_Shift_Del p.F138Lfs*21 0.30 TCGA-EA-A410-01 12 89742558 89742558 T - DUSP6 3'UTR 0.46 TCGA-EA-A410-01 12 89819112 89819112 C A POC1B Missense_Mutation p.E386D 0.29 tolerated(0.55) benign(0) TCGA-EA-A410-01 12 8988254 8988254 A G A2ML1 Missense_Mutation p.E212G 0.38 deleterious(0) possibly_damaging(0.72) TCGA-EA-A410-01 12 95603514 95603514 C T FGD6 Missense_Mutation p.E516K 0.52 tolerated(0.08) possibly_damaging(0.747) TCGA-EA-A410-01 12 95650969 95650969 T - VEZT Frame_Shift_Del p.S74Lfs*38 0.25 TCGA-EA-A410-01 12 96588323 96588323 A - ELK3 5'UTR 0.56 TCGA-EA-A410-01 12 98850826 98850826 A G SLC9A7P1 RNA 0.24 TCGA-EA-A410-01 13 100153859 100153859 T C TM9SF2 5'UTR 0.39 TCGA-EA-A410-01 13 100181813 100181814 - A TM9SF2 Frame_Shift_Ins p.S145Kfs*14 0.38 TCGA-EA-A410-01 13 100615919 100615920 - T ZIC5 3'UTR 0.27 TCGA-EA-A410-01 13 107165070 107165070 G A EFNB2 Silent p.G71G 0.44 TCGA-EA-A410-01 13 108863111 108863111 T - LIG4 Frame_Shift_Del p.K169Rfs*7 0.16 TCGA-EA-A410-01 13 108884458 108884458 A - ABHD13 3'UTR 0.86 TCGA-EA-A410-01 13 111372025 111372025 C T ING1 Nonsense_Mutation p.R339* 0.48 TCGA-EA-A410-01 13 114107591 114107591 G A ADPRHL1 Silent p.P54P 0.33 TCGA-EA-A410-01 13 114623708 114623708 C T LINC00452 RNA 0.42 TCGA-EA-A410-01 13 23903393 23903393 T - SACS 3'UTR 0.70 TCGA-EA-A410-01 13 23911842 23911843 - A SACS Frame_Shift_Ins p.S2058Ffs*2 0.33 TCGA-EA-A410-01 13 23912864 23912864 T - SACS Frame_Shift_Del p.K1717Nfs*8 0.44 TCGA-EA-A410-01 13 25671691 25671691 C T PABPC3 Missense_Mutation p.A452V 0.44 tolerated(0.18) benign(0.003) TCGA-EA-A410-01 13 28367741 28367741 C T GSX1 Missense_Mutation p.R151C 0.24 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 13 28537208 28537208 A G CDX2 3'UTR 0.41 TCGA-EA-A410-01 13 32835894 32835894 G A FRY Missense_Mutation p.D2520N 0.64 deleterious(0) possibly_damaging(0.7) TCGA-EA-A410-01 13 32868688 32868688 C T FRY Missense_Mutation p.R2922W 0.45 deleterious(0.01) benign(0.339) TCGA-EA-A410-01 13 39262886 39262886 G C FREM2 Missense_Mutation p.V469L 0.41 tolerated(0.13) benign(0.008) TCGA-EA-A410-01 13 39917257 39917257 T A LHFP 3'UTR 0.36 TCGA-EA-A410-01 13 41132504 41132504 A - FOXO1 3'UTR 0.33 TCGA-EA-A410-01 13 41133065 41133065 T G FOXO1 3'UTR 0.24 TCGA-EA-A410-01 13 46716466 46716466 C T LCP1 Missense_Mutation p.R488H 0.39 tolerated(0.16) benign(0.008) TCGA-EA-A410-01 13 48523626 48523626 C T SUCLA2 Missense_Mutation p.R407Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 13 48985978 48985978 A - LPAR6 Frame_Shift_Del p.F194Lfs*4 0.23 TCGA-EA-A410-01 13 50273577 50273577 A T KPNA3 3'UTR 0.24 TCGA-EA-A410-01 13 53298165 53298165 G A LECT1 Silent p.G145G 0.51 TCGA-EA-A410-01 13 66877255 66877256 - T PCDH9 3'UTR 0.38 TCGA-EA-A410-01 13 78337362 78337362 T G SLAIN1 3'UTR 0.42 TCGA-EA-A410-01 13 88331114 88331114 A - SLITRK5 3'UTR 0.60 TCGA-EA-A410-01 13 95858818 95858818 A G ABCC4 Missense_Mutation p.S377P 0.37 deleterious(0.01) possibly_damaging(0.797) TCGA-EA-A410-01 13 97995307 97995307 C T MBNL2 Missense_Mutation p.T126M 0.49 tolerated(0.05) benign(0.026) TCGA-EA-A410-01 13 99573279 99573279 A - DOCK9 Frame_Shift_Del p.Y216Ifs*60 0.32 TCGA-EA-A410-01 13 99948213 99948213 T - GPR183 Frame_Shift_Del p.I63Sfs*12 0.26 TCGA-EA-A410-01 14 100795168 100795168 C - SLC25A47 Frame_Shift_Del p.M147Cfs*23 0.35 TCGA-EA-A410-01 14 101005605 101005605 G A BEGAIN Silent p.H161H 0.35 TCGA-EA-A410-01 14 101200555 101200555 C - DLK1 Frame_Shift_Del p.P160Lfs*50 0.35 TCGA-EA-A410-01 14 101347608 101347608 C A RTL1 Missense_Mutation p.W1173L 0.43 deleterious_low_confidence(0.02) benign(0.118) TCGA-EA-A410-01 14 101491404 101491404 G C MIR380 RNA 0.47 TCGA-EA-A410-01 14 102392207 102392207 G A PPP2R5C 3'UTR 0.37 TCGA-EA-A410-01 14 102505491 102505491 C T DYNC1H1 Missense_Mutation p.T3787M 0.54 probably_damaging(0.996) TCGA-EA-A410-01 14 103440387 103440387 C T CDC42BPB Missense_Mutation p.R536H 0.38 deleterious(0) possibly_damaging(0.832) TCGA-EA-A410-01 14 103470337 103470337 G A CDC42BPB Silent p.R125R 0.44 TCGA-EA-A410-01 14 103573845 103573845 G A EXOC3L4 Missense_Mutation p.G556S 0.54 tolerated(0.54) benign(0.025) TCGA-EA-A410-01 14 105461128 105461128 T - C14orf79 3'UTR 0.38 TCGA-EA-A410-01 14 105518434 105518434 C T GPR132 Missense_Mutation p.A14T 0.33 tolerated_low_confidence(0.38) benign(0.002) TCGA-EA-A410-01 14 105618339 105618339 G A JAG2 Silent p.N325N 0.38 TCGA-EA-A410-01 14 105642881 105642881 C T NUDT14 Missense_Mutation p.A140T 0.41 tolerated(1) benign(0.017) TCGA-EA-A410-01 14 105685610 105685610 G A BRF1 Intron 0.39 TCGA-EA-A410-01 14 105821483 105821483 C T PACS2 Missense_Mutation p.T131M 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-EA-A410-01 14 105965304 105965304 G A C14orf80 3'UTR 0.28 TCGA-EA-A410-01 14 106805614 106805614 C T IGHV4-31 Missense_Mutation p.V11M 0.21 tolerated_low_confidence(0.12) possibly_damaging(0.759) TCGA-EA-A410-01 14 20859840 20859840 G T TEP1 Missense_Mutation p.P672H 0.09 deleterious(0) probably_damaging(0.992) TCGA-EA-A410-01 14 21543298 21543299 GA - ARHGEF40 Frame_Shift_Del p.E473Afs*21 0.47 TCGA-EA-A410-01 14 21560580 21560580 G A ZNF219 Silent p.H292H 0.44 TCGA-EA-A410-01 14 21679221 21679221 C T HNRNPC 3'UTR 0.24 TCGA-EA-A410-01 14 21829008 21829008 T C SUPT16H Missense_Mutation p.N685D 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-EA-A410-01 14 21861787 21861787 C T CHD8 Missense_Mutation p.R2056Q 0.18 tolerated_low_confidence(0.33) benign(0.238) TCGA-EA-A410-01 14 21897286 21897287 - T CHD8 Frame_Shift_Ins p.I351Nfs*70 0.38 TCGA-EA-A410-01 14 21993613 21993613 A C SALL2 Silent p.P83P 0.37 TCGA-EA-A410-01 14 22749630 22749630 C T TRAV38-2DV8 Silent p.S116S 0.55 TCGA-EA-A410-01 14 23524502 23524502 C - CDH24 Frame_Shift_Del p.A88Qfs*6 0.31 TCGA-EA-A410-01 14 23524531 23524531 C T CDH24 Missense_Mutation p.R78H 0.38 deleterious(0.01) probably_damaging(1) TCGA-EA-A410-01 14 27066756 27066756 T - NOVA1 5'UTR 0.62 TCGA-EA-A410-01 14 32615501 32615501 G A ARHGAP5 Missense_Mutation p.G1300R 0.42 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 14 33290859 33290859 C A AKAP6 Silent p.P1280P 0.43 TCGA-EA-A410-01 14 35181107 35181107 A - CFL2 3'UTR 0.44 TCGA-EA-A410-01 14 35234103 35234103 G A BAZ1A Nonsense_Mutation p.R1196* 0.33 TCGA-EA-A410-01 14 35782216 35782216 A - PSMA6 Frame_Shift_Del p.V183* 0.44 TCGA-EA-A410-01 14 36003563 36003563 G A INSM2 Silent p.P35P 0.30 TCGA-EA-A410-01 14 36217920 36217920 C T RALGAPA1 Silent p.T374T 0.39 TCGA-EA-A410-01 14 38060333 38060333 A - FOXA1 3'UTR 0.29 TCGA-EA-A410-01 14 38296517 38296517 G A TTC6 Silent p.S1748S 0.42 TCGA-EA-A410-01 14 39646650 39646650 C T PNN Missense_Mutation p.R97C 0.27 deleterious(0) probably_damaging(0.99) TCGA-EA-A410-01 14 45370113 45370113 C T C14orf28 Nonsense_Mutation p.R159* 0.37 TCGA-EA-A410-01 14 45398007 45398007 T - KLHL28 3'UTR 0.37 TCGA-EA-A410-01 14 45414966 45414966 C T KLHL28 Missense_Mutation p.V56I 0.38 tolerated(0.37) benign(0.001) TCGA-EA-A410-01 14 45636368 45636368 T C FANCM Splice_Site p.X668_splice 0.33 TCGA-EA-A410-01 14 50089989 50089989 T - MGAT2 3'UTR 0.37 TCGA-EA-A410-01 14 50255997 50255997 G T NEMF Missense_Mutation p.P921H 0.33 tolerated(0.08) benign(0.13) TCGA-EA-A410-01 14 50360959 50360959 T C ARF6 Silent p.L169L 0.32 TCGA-EA-A410-01 14 51561516 51561516 G - TRIM9 Frame_Shift_Del p.Q48Rfs*21 0.31 TCGA-EA-A410-01 14 52194473 52194473 G A FRMD6 Missense_Mutation p.R532Q 0.23 tolerated(0.27) possibly_damaging(0.883) TCGA-EA-A410-01 14 53324963 53324963 T C FERMT2 3'UTR 0.51 TCGA-EA-A410-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.22 TCGA-EA-A410-01 14 55531557 55531557 G A MAPK1IP1L 3'UTR 0.25 TCGA-EA-A410-01 14 55817931 55817931 G A FBXO34 Missense_Mutation p.E275K 0.46 tolerated(0.07) probably_damaging(0.998) TCGA-EA-A410-01 14 55835671 55835671 T G ATG14 3'UTR 0.56 TCGA-EA-A410-01 14 56233178 56233178 C T RP11-813I20.2 Intron 0.35 TCGA-EA-A410-01 14 58814450 58814451 - A ARID4A Frame_Shift_Ins p.D423Rfs*24 0.50 TCGA-EA-A410-01 14 60582163 60582163 G A PCNXL4 Silent p.R213R 0.35 TCGA-EA-A410-01 14 61509874 61509874 A - SLC38A6 Frame_Shift_Del p.K213Nfs*8 0.23 TCGA-EA-A410-01 14 64427501 64427501 G T SYNE2 Intron 0.28 TCGA-EA-A410-01 14 65009523 65009524 TC - HSPA2 3'UTR 0.33 TCGA-EA-A410-01 14 65213611 65213611 A - SPTB 3'UTR 0.63 TCGA-EA-A410-01 14 65266481 65266481 C T SPTB Missense_Mutation p.V350M 0.39 deleterious(0) probably_damaging(0.919) TCGA-EA-A410-01 14 65544747 65544747 C T MAX Missense_Mutation p.R60Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 14 67787115 67787115 G A MPP5 Splice_Site p.X513_splice 0.13 TCGA-EA-A410-01 14 68054313 68054314 - G PLEKHH1 3'UTR 0.29 TCGA-EA-A410-01 14 68059360 68059360 C T PIGH Missense_Mutation p.V156I 0.29 tolerated(0.07) benign(0.09) TCGA-EA-A410-01 14 69821107 69821107 G A GALNT16 3'UTR 0.40 TCGA-EA-A410-01 14 69925147 69925147 T G SLC39A9 Missense_Mutation p.F254C 0.24 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 14 69994596 69994596 G A PLEKHD1 Missense_Mutation p.R433H 0.37 deleterious(0) possibly_damaging(0.684) TCGA-EA-A410-01 14 71443894 71443894 G A PCNX Silent p.P280P 0.37 TCGA-EA-A410-01 14 71580203 71580203 C T PCNX 3'UTR 0.29 TCGA-EA-A410-01 14 73136813 73136813 A - DPF3 3'UTR 0.31 TCGA-EA-A410-01 14 73407001 73407001 C - DCAF4 Frame_Shift_Del p.L91* 0.24 TCGA-EA-A410-01 14 73586614 73586614 T - RBM25 3'UTR 0.41 TCGA-EA-A410-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.28 TCGA-EA-A410-01 14 74874675 74874675 C T SYNDIG1L Silent p.T145T 0.37 TCGA-EA-A410-01 14 74969424 74969424 C T LTBP2 Missense_Mutation p.R1701H 0.43 tolerated(0.43) benign(0.001) TCGA-EA-A410-01 14 75514604 75514604 T - MLH3 Frame_Shift_Del p.E586Nfs*24 0.44 TCGA-EA-A410-01 14 75538025 75538025 C T ZC2HC1C Missense_Mutation p.T250M 0.27 deleterious(0.02) benign(0.346) TCGA-EA-A410-01 14 75558141 75558141 G A NEK9 Silent p.G758G 0.39 TCGA-EA-A410-01 14 75745793 75745795 CTT - FOS In_Frame_Del p.F37del 0.52 TCGA-EA-A410-01 14 76135826 76135826 G A TTLL5 Missense_Mutation p.A48T 0.27 deleterious(0.04) benign(0.265) TCGA-EA-A410-01 14 77900246 77900246 G A VIPAS39 Missense_Mutation p.A373V 0.32 deleterious(0.04) probably_damaging(0.98) TCGA-EA-A410-01 14 77984392 77984395 TTTC - SPTLC2 Frame_Shift_Del p.E519Yfs*6 0.32 TCGA-EA-A410-01 14 78392197 78392197 C T ADCK1 Nonsense_Mutation p.R367* 0.37 TCGA-EA-A410-01 14 81743677 81743677 G A STON2 Missense_Mutation p.R660W 0.38 deleterious(0) probably_damaging(0.982) TCGA-EA-A410-01 14 89627650 89627650 T - FOXN3 3'UTR 0.31 TCGA-EA-A410-01 14 90874494 90874497 TGTT - CALM1 3'UTR 0.40 TCGA-EA-A410-01 14 91780390 91780392 CTT - CCDC88C In_Frame_Del p.K590del 0.35 TCGA-EA-A410-01 14 91804427 91804427 G A CCDC88C Silent p.R324R 0.53 TCGA-EA-A410-01 14 92336628 92336628 G T FBLN5 Silent p.I429I 0.26 TCGA-EA-A410-01 14 93760603 93760603 A - BTBD7 Frame_Shift_Del p.S255Qfs*16 0.26 TCGA-EA-A410-01 14 94158163 94158163 C T UNC79 Silent p.C2309C 0.37 TCGA-EA-A410-01 14 94395272 94395272 G A FAM181A Missense_Mutation p.C276Y 0.42 deleterious(0) probably_damaging(0.975) TCGA-EA-A410-01 14 95557639 95557639 C T DICER1 Missense_Mutation p.D1810N 0.33 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 14 95657965 95657965 A T CLMN Missense_Mutation p.L982H 0.46 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 14 96730186 96730186 T C BDKRB1 Missense_Mutation p.L56P 0.28 deleterious(0.01) probably_damaging(0.95) TCGA-EA-A410-01 14 97033431 97033431 A - PAPOLA 3'UTR 0.30 TCGA-EA-A410-01 14 99638831 99638831 A - BCL11B 3'UTR 0.37 TCGA-EA-A410-01 15 100871207 100871207 T C ADAMTS17 Missense_Mutation p.N168S 0.40 tolerated(0.39) benign(0.001) TCGA-EA-A410-01 15 101120848 101120848 G A LINS Missense_Mutation p.A67V 0.33 tolerated(0.34) benign(0.149) TCGA-EA-A410-01 15 101825261 101825261 G A SNRPA1 Missense_Mutation p.A207V 0.07 deleterious(0) probably_damaging(0.98) TCGA-EA-A410-01 15 102215848 102215848 C T TARSL2 Silent p.P581P 0.54 TCGA-EA-A410-01 15 22864217 22864217 T - TUBGCP5 Frame_Shift_Del p.F727Sfs*2 0.24 TCGA-EA-A410-01 15 22955206 22955206 C T CYFIP1 Missense_Mutation p.R534W 0.39 deleterious(0) probably_damaging(0.948) TCGA-EA-A410-01 15 23114237 23114237 C T RP11-566K19.6 RNA 0.40 TCGA-EA-A410-01 15 23299913 23299913 A G HERC2P2 Splice_Site 0.28 TCGA-EA-A410-01 15 23890782 23890782 G A MAGEL2 Missense_Mutation p.A100V 0.38 deleterious_low_confidence(0.02) benign(0.089) TCGA-EA-A410-01 15 25304706 25304706 A - SNORD116-3 3'Flank 0.34 TCGA-EA-A410-01 15 25333949 25333949 G A SNORD116-20 RNA 0.30 TCGA-EA-A410-01 15 25462391 25462391 C T SNORD115-27 5'Flank 0.31 TCGA-EA-A410-01 15 25485038 25485038 T A SNORD115-38 RNA 0.05 TCGA-EA-A410-01 15 25959128 25959128 C T ATP10A Silent p.S679S 0.43 TCGA-EA-A410-01 15 27725897 27725897 C T GABRG3 Missense_Mutation p.L226F 0.22 deleterious(0.03) possibly_damaging(0.87) TCGA-EA-A410-01 15 28356695 28356695 C A HERC2 3'UTR 0.50 TCGA-EA-A410-01 15 28420775 28420775 G A HERC2 Silent p.G3238G 0.38 TCGA-EA-A410-01 15 33795934 33795934 G T RYR3 Nonsense_Mutation p.E92* 0.29 TCGA-EA-A410-01 15 33962714 33962714 G T RYR3 Missense_Mutation p.K1939N 0.33 benign(0.01) TCGA-EA-A410-01 15 34102846 34102846 G T RYR3 Missense_Mutation p.S3398I 0.28 benign(0.128) TCGA-EA-A410-01 15 34396324 34396324 C T PGBD4 Missense_Mutation p.T531M 0.35 deleterious(0.01) possibly_damaging(0.499) TCGA-EA-A410-01 15 34671443 34671443 G A GOLGA8A 3'UTR 0.24 TCGA-EA-A410-01 15 35044909 35044909 G A GJD2 Missense_Mutation p.R246W 0.47 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 15 35189859 35189859 G A AQR Missense_Mutation p.A764V 0.42 tolerated(0.38) benign(0.001) TCGA-EA-A410-01 15 37110335 37110335 C T CSNK1A1P1 RNA 0.36 TCGA-EA-A410-01 15 38645341 38645341 T - SPRED1 3'UTR 0.41 TCGA-EA-A410-01 15 38786964 38786964 A G RASGRP1 Silent p.P626P 0.45 TCGA-EA-A410-01 15 40678666 40678666 A - KNSTRN Frame_Shift_Del p.I138Sfs*4 0.31 TCGA-EA-A410-01 15 41106523 41106523 A G ZFYVE19 3'UTR 0.50 TCGA-EA-A410-01 15 41280046 41280046 G A INO80 Missense_Mutation p.R1233C 0.41 deleterious(0) probably_damaging(0.988) TCGA-EA-A410-01 15 41809668 41809668 C T RPAP1 3'UTR 0.61 TCGA-EA-A410-01 15 41819794 41819794 C T RPAP1 Missense_Mutation p.D480N 0.34 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 15 42160795 42160795 C T SPTBN5 Missense_Mutation p.R1953H 0.39 possibly_damaging(0.763) TCGA-EA-A410-01 15 42434789 42434789 G - PLA2G4F Frame_Shift_Del p.R756Afs*47 0.27 TCGA-EA-A410-01 15 42743540 42743540 T C ZNF106 Silent p.K287K 0.38 TCGA-EA-A410-01 15 43023991 43023991 G A CDAN1 Silent p.T522T 0.44 TCGA-EA-A410-01 15 43621515 43621515 C T LCMT2 Silent p.L391L 0.50 TCGA-EA-A410-01 15 43641115 43641115 A - ADAL Frame_Shift_Del p.E191Kfs*33 0.46 TCGA-EA-A410-01 15 43817400 43817400 C T MAP1A Silent p.A1243A 0.30 TCGA-EA-A410-01 15 48065616 48065616 C T SEMA6D 3'UTR 0.29 TCGA-EA-A410-01 15 48519352 48519352 G A SLC12A1 Silent p.T235T 0.49 TCGA-EA-A410-01 15 49421711 49421714 TTAA - COPS2 Frame_Shift_Del p.I370Sfs*15 0.45 TCGA-EA-A410-01 15 50570605 50570605 A - GABPB1 3'UTR 0.64 TCGA-EA-A410-01 15 50596193 50596193 G A GABPB1 Silent p.G82G 0.34 TCGA-EA-A410-01 15 50891403 50891403 C A TRPM7 Missense_Mutation p.A1027S 0.23 tolerated(0.13) benign(0.005) TCGA-EA-A410-01 15 50931739 50931739 G A TRPM7 Missense_Mutation p.A181V 0.33 tolerated(0.15) benign(0.145) TCGA-EA-A410-01 15 52427878 52427878 C T GNB5 Missense_Mutation p.G235R 0.43 deleterious(0) probably_damaging(0.992) TCGA-EA-A410-01 15 52571168 52571168 G A MYO5C Silent p.Y117Y 0.38 TCGA-EA-A410-01 15 59911291 59911291 C A GCNT3 Missense_Mutation p.P285H 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-EA-A410-01 15 62244050 62244050 T - VPS13C Frame_Shift_Del p.I1477Lfs*24 0.37 TCGA-EA-A410-01 15 62978909 62978909 G A TLN2 Missense_Mutation p.V343M 0.37 tolerated(0.08) possibly_damaging(0.699) TCGA-EA-A410-01 15 62986586 62986586 A - TLN2 Frame_Shift_Del p.K431Sfs*25 0.33 TCGA-EA-A410-01 15 63340982 63340982 T C TPM1 Intron 0.28 TCGA-EA-A410-01 15 63554916 63554916 T C RAB8B Missense_Mutation p.I169T 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-EA-A410-01 15 65550995 65550995 A - PARP16 3'UTR 0.43 TCGA-EA-A410-01 15 65623825 65623825 G A IGDCC3 Missense_Mutation p.R441C 0.30 deleterious(0.01) possibly_damaging(0.901) TCGA-EA-A410-01 15 65868695 65868695 A - PTPLAD1 Frame_Shift_Del p.K358Rfs*17 0.29 TCGA-EA-A410-01 15 66208490 66208490 C A MEGF11 Missense_Mutation p.E780D 0.07 tolerated(0.15) benign(0.301) TCGA-EA-A410-01 15 66727424 66727424 G A MAP2K1 Missense_Mutation p.R47Q 0.31 tolerated(0.12) benign(0.011) TCGA-EA-A410-01 15 66727430 66727430 G A MAP2K1 Missense_Mutation p.R49H 0.49 tolerated(0.07) benign(0.125) TCGA-EA-A410-01 15 66994776 66994776 G - SMAD6 5'UTR 0.38 TCGA-EA-A410-01 15 67473650 67473650 G A SMAD3 Missense_Mutation p.V244I 0.35 tolerated(0.12) benign(0.181) TCGA-EA-A410-01 15 67473779 67473779 C T SMAD3 Missense_Mutation p.R287W 0.36 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 15 68595390 68595391 TG - ITGA11 3'UTR 0.27 TCGA-EA-A410-01 15 70356803 70356804 TC - TLE3 Frame_Shift_Del p.E195Ifs*5 0.18 TCGA-EA-A410-01 15 75095447 75095447 C T CSK 3'UTR 0.38 TCGA-EA-A410-01 15 75146410 75146410 C A SCAMP2 Missense_Mutation p.Q59H 0.37 deleterious(0.02) possibly_damaging(0.687) TCGA-EA-A410-01 15 75499804 75499804 C - C15orf39 Frame_Shift_Del p.P474Qfs*91 0.38 TCGA-EA-A410-01 15 76496210 76496210 G A C15orf27 Missense_Mutation p.A384T 0.29 tolerated_low_confidence(0.18) benign(0.004) TCGA-EA-A410-01 15 77406644 77406644 G A PEAK1 Nonsense_Mutation p.R1699* 0.36 TCGA-EA-A410-01 15 77776804 77776804 C T HMG20A 3'UTR 0.53 TCGA-EA-A410-01 15 78526761 78526761 C T ACSBG1 Missense_Mutation p.S28N 0.55 tolerated_low_confidence(0.15) benign(0.002) TCGA-EA-A410-01 15 78757719 78757719 C T IREB2 Silent p.D133D 0.47 TCGA-EA-A410-01 15 82334692 82334692 T C MEX3B 3'UTR 0.26 TCGA-EA-A410-01 15 83499757 83499757 A G WHAMM Missense_Mutation p.D683G 0.50 deleterious(0.01) possibly_damaging(0.616) TCGA-EA-A410-01 15 85053195 85053195 C T GOLGA6L5P RNA 0.06 TCGA-EA-A410-01 15 85467297 85467297 G A SLC28A1 Missense_Mutation p.A347T 0.07 deleterious(0.01) possibly_damaging(0.881) TCGA-EA-A410-01 15 90190209 90190209 C - KIF7 Frame_Shift_Del p.G547Afs*5 0.36 TCGA-EA-A410-01 15 90195875 90195875 G A KIF7 Missense_Mutation p.T96M 0.26 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 15 90904013 90904013 G A ZNF774 Missense_Mutation p.R317Q 0.44 tolerated(0.06) possibly_damaging(0.784) TCGA-EA-A410-01 15 91461594 91461594 C T MAN2A2 Silent p.L1055L 0.09 TCGA-EA-A410-01 15 92706141 92706141 G A SLCO3A1 Missense_Mutation p.A637T 0.32 tolerated(0.08) benign(0.329) TCGA-EA-A410-01 15 93015501 93015501 G A C15orf32 Silent p.T41T 0.35 TCGA-EA-A410-01 15 93043663 93043663 G T C15orf32 3'UTR 0.34 TCGA-EA-A410-01 15 94899262 94899262 T - MCTP2 Intron 0.29 TCGA-EA-A410-01 15 96881910 96881910 T - NR2F2 3'UTR 0.27 TCGA-EA-A410-01 16 1034734 1034734 C - SOX8 Frame_Shift_Del p.K232Rfs*13 0.52 TCGA-EA-A410-01 16 10576331 10576331 C T ATF7IP2 3'UTR 0.30 TCGA-EA-A410-01 16 11550777 11550777 G A CTD-3088G3.8 Missense_Mutation p.P1293L 0.35 tolerated(1) unknown(0) TCGA-EA-A410-01 16 11792086 11792086 G A TXNDC11 Silent p.H334H 0.09 TCGA-EA-A410-01 16 1389119 1389119 G T BAIAP3 Intron 0.44 TCGA-EA-A410-01 16 14346300 14346300 C - MKL2 Frame_Shift_Del p.R834Afs*44 0.39 TCGA-EA-A410-01 16 15688930 15688930 A - KIAA0430 3'UTR 0.35 TCGA-EA-A410-01 16 1637962 1637962 C T IFT140 Missense_Mutation p.V292M 0.40 deleterious(0.04) possibly_damaging(0.648) TCGA-EA-A410-01 16 1706609 1706609 G A CRAMP1L Silent p.P617P 0.38 TCGA-EA-A410-01 16 18434553 18434553 C T NPIPA8 5'Flank 0.92 TCGA-EA-A410-01 16 19132594 19132594 A - ITPRIPL2 3'UTR 0.30 TCGA-EA-A410-01 16 19468082 19468082 C A TMC5 Intron 0.39 TCGA-EA-A410-01 16 2049598 2049598 G - ZNF598 Frame_Shift_Del p.P651Lfs*42 0.32 TCGA-EA-A410-01 16 20651823 20651823 G A ACSM1 Missense_Mutation p.T359M 0.38 deleterious(0.01) probably_damaging(1) TCGA-EA-A410-01 16 20857556 20857556 A G AC004381.6 Missense_Mutation p.D713G 0.39 deleterious(0.01) benign(0.434) TCGA-EA-A410-01 16 2138075 2138075 G A TSC2 Missense_Mutation p.V1699M 0.36 tolerated(0.09) benign(0.025) TCGA-EA-A410-01 16 2149900 2149900 G A PKD1 Silent p.N3295N 0.36 TCGA-EA-A410-01 16 2153609 2153609 C T PKD1 Missense_Mutation p.A2817T 0.32 benign(0.028) TCGA-EA-A410-01 16 2338222 2338222 C T ABCA3 Missense_Mutation p.V937I 0.10 tolerated(0.78) benign(0.009) TCGA-EA-A410-01 16 23634449 23634449 G A PALB2 Missense_Mutation p.A946V 0.44 tolerated(0.26) benign(0.198) TCGA-EA-A410-01 16 25251334 25251334 G A ZKSCAN2 Nonsense_Mutation p.R903* 0.38 TCGA-EA-A410-01 16 25704253 25704253 C T HS3ST4 Missense_Mutation p.A172V 0.42 tolerated_low_confidence(0.12) benign(0.037) TCGA-EA-A410-01 16 27499608 27499608 T - GTF3C1 Frame_Shift_Del p.S1214Afs*7 0.39 TCGA-EA-A410-01 16 2817271 2817271 C T SRRM2 Missense_Mutation p.P2248S 0.36 benign(0.443) TCGA-EA-A410-01 16 28334238 28334238 G T SBK1 3'UTR 0.27 TCGA-EA-A410-01 16 29367128 29367128 G A SNX29P2 RNA 0.33 TCGA-EA-A410-01 16 3022637 3022637 G A PKMYT1 3'Flank 0.28 TCGA-EA-A410-01 16 3066012 3066012 G A CLDN6 Missense_Mutation p.A4V 0.31 tolerated(0.32) benign(0.007) TCGA-EA-A410-01 16 30671651 30671651 G - FBRS Frame_Shift_Del p.G178Afs*113 0.37 TCGA-EA-A410-01 16 30750197 30750197 C T SRCAP Nonsense_Mutation p.R2946* 0.29 TCGA-EA-A410-01 16 30776560 30776560 C T RNF40 Missense_Mutation p.T277I 0.34 tolerated(0.09) benign(0.194) TCGA-EA-A410-01 16 31002581 31002581 G A STX1B 3'UTR 0.17 TCGA-EA-A410-01 16 31049930 31049930 G A STX4 Missense_Mutation p.D222N 0.50 deleterious(0) benign(0.322) TCGA-EA-A410-01 16 31097429 31097429 A T PRSS53 Missense_Mutation p.S247T 0.42 tolerated(0.43) benign(0.058) TCGA-EA-A410-01 16 31123475 31123475 C T BCKDK Silent p.Y376Y 0.32 TCGA-EA-A410-01 16 31473868 31473868 C T ARMC5 Missense_Mutation p.R334C 0.42 deleterious(0.01) possibly_damaging(0.685) TCGA-EA-A410-01 16 31500356 31500356 G A SLC5A2 Missense_Mutation p.R479H 0.46 deleterious(0) probably_damaging(0.99) TCGA-EA-A410-01 16 319343 319343 G - RGS11 Frame_Shift_Del p.S444Afs*42 0.44 TCGA-EA-A410-01 16 321285 321285 G T RGS11 Missense_Mutation p.P260H 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-EA-A410-01 16 32264792 32264792 G A TP53TG3D Missense_Mutation p.G40S 0.22 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-EA-A410-01 16 3646254 3646254 C T SLX4 Silent p.E608E 0.43 TCGA-EA-A410-01 16 3714551 3714551 G A TRAP1 Intron 0.43 TCGA-EA-A410-01 16 3775138 3775139 TT - CREBBP 3'UTR 0.24 TCGA-EA-A410-01 16 3828120 3828120 G A CREBBP Missense_Mutation p.R669W 0.34 probably_damaging(0.918) TCGA-EA-A410-01 16 4310539 4310539 C G TFAP4 Missense_Mutation p.V195L 0.34 tolerated(0.07) unknown(0) TCGA-EA-A410-01 16 4311937 4311937 G A TFAP4 Missense_Mutation p.S123L 0.49 deleterious(0.02) benign(0.026) TCGA-EA-A410-01 16 4408414 4408414 C T CORO7 Missense_Mutation p.R804H 0.33 tolerated(0.05) possibly_damaging(0.785) TCGA-EA-A410-01 16 4433028 4433028 C T VASN 3'UTR 0.30 TCGA-EA-A410-01 16 46637945 46637945 C T SHCBP1 Missense_Mutation p.R345Q 0.44 tolerated(1) benign(0.001) TCGA-EA-A410-01 16 46694411 46694411 C T VPS35 Silent p.G788G 0.45 TCGA-EA-A410-01 16 47007488 47007488 G A DNAJA2 5'UTR 0.41 TCGA-EA-A410-01 16 47116055 47116055 A - NETO2 3'UTR 0.24 TCGA-EA-A410-01 16 4721462 4721462 T C MGRN1 Splice_Site p.X265_splice 0.40 TCGA-EA-A410-01 16 47294599 47294599 G A ITFG1 Nonsense_Mutation p.Q360* 0.31 TCGA-EA-A410-01 16 48162433 48162433 G A ABCC12 Silent p.G484G 0.36 TCGA-EA-A410-01 16 50745613 50745613 G A NOD2 Silent p.A597A 0.37 TCGA-EA-A410-01 16 5140235 5140235 G A FAM86A Nonsense_Mutation p.R198* 0.43 TCGA-EA-A410-01 16 54319087 54319087 C - IRX3 Frame_Shift_Del p.E236Rfs*24 0.32 TCGA-EA-A410-01 16 54968116 54968116 T - IRX5 3'UTR 0.24 TCGA-EA-A410-01 16 54968172 54968172 A - IRX5 3'UTR 0.51 TCGA-EA-A410-01 16 55559501 55559501 G A LPCAT2 Missense_Mutation p.A85T 0.41 tolerated(0.41) benign(0.002) TCGA-EA-A410-01 16 56466532 56466532 A - NUDT21 3'UTR 0.24 TCGA-EA-A410-01 16 57060492 57060492 G A NLRC5 Missense_Mutation p.R546H 0.42 tolerated(0.44) benign(0.075) TCGA-EA-A410-01 16 57060734 57060734 C A NLRC5 Missense_Mutation p.L627M 0.41 deleterious(0) probably_damaging(0.996) TCGA-EA-A410-01 16 57127881 57127881 C - CPNE2 5'UTR 0.22 TCGA-EA-A410-01 16 57449068 57449068 C T CCL17 Missense_Mutation p.T49M 0.31 tolerated(0.2) benign(0.138) TCGA-EA-A410-01 16 57938728 57938728 C - CNGB1 Frame_Shift_Del p.L849Cfs*15 0.24 TCGA-EA-A410-01 16 58149340 58149340 G A C16orf80 Missense_Mutation p.R100C 0.05 deleterious(0) benign(0.15) TCGA-EA-A410-01 16 58712616 58712616 G A SLC38A7 Silent p.G151G 0.53 TCGA-EA-A410-01 16 62055072 62055072 G A CDH8 Missense_Mutation p.P79L 0.42 deleterious(0.02) probably_damaging(0.984) TCGA-EA-A410-01 16 633388 633388 G A PIGQ Silent p.Q679Q 0.28 TCGA-EA-A410-01 16 64982665 64982665 G - CDH11 Intron 0.38 TCGA-EA-A410-01 16 64984692 64984692 G A CDH11 Silent p.L624L 0.38 TCGA-EA-A410-01 16 66423264 66423264 G A CDH5 Missense_Mutation p.R207H 0.31 tolerated(0.07) benign(0.089) TCGA-EA-A410-01 16 66438646 66438646 T - CDH5 3'UTR 0.38 TCGA-EA-A410-01 16 67227059 67227059 C T E2F4 Silent p.D131D 0.33 TCGA-EA-A410-01 16 67314073 67314073 C T PLEKHG4 Silent p.H42H 0.33 TCGA-EA-A410-01 16 67319336 67319336 G A PLEKHG4 Missense_Mutation p.G780D 0.41 deleterious(0) probably_damaging(0.994) TCGA-EA-A410-01 16 67605059 67605059 C T CTCF 5'UTR 0.42 TCGA-EA-A410-01 16 67645338 67645339 - A CTCF Frame_Shift_Ins p.T204Nfs*26 0.29 TCGA-EA-A410-01 16 67671741 67671741 C T CTCF Missense_Mutation p.T717M 0.52 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EA-A410-01 16 67672833 67672833 T - CTCF 3'UTR 0.39 TCGA-EA-A410-01 16 67691355 67691355 C A RLTPR Silent p.P1414P 0.30 TCGA-EA-A410-01 16 67763669 67763669 C T RANBP10 Missense_Mutation p.R354Q 0.35 tolerated(0.06) possibly_damaging(0.753) TCGA-EA-A410-01 16 67913827 67913827 T G EDC4 Silent p.A632A 0.45 TCGA-EA-A410-01 16 681307 681307 G - WFIKKN1 Frame_Shift_Del p.A20Lfs*198 0.32 TCGA-EA-A410-01 16 697471 697471 G A FAM195A Silent p.T79T 0.37 TCGA-EA-A410-01 16 70507173 70507173 G A FUK Missense_Mutation p.R565Q 0.33 tolerated(0.51) benign(0.004) TCGA-EA-A410-01 16 70557318 70557318 C T COG4 Silent p.L43L 0.27 TCGA-EA-A410-01 16 72817089 72817090 - T ZFHX3 3'UTR 0.25 TCGA-EA-A410-01 16 72822306 72822306 G A ZFHX3 Missense_Mutation p.A3290V 0.47 unknown(0) TCGA-EA-A410-01 16 72828544 72828544 G A ZFHX3 Silent p.G2679G 0.31 TCGA-EA-A410-01 16 72830806 72830807 - C ZFHX3 Frame_Shift_Ins p.G1926Wfs*3 0.28 TCGA-EA-A410-01 16 736858 736858 G A WDR24 Silent p.G406G 0.10 TCGA-EA-A410-01 16 74446734 74446734 G A CLEC18B Missense_Mutation p.R241C 0.11 tolerated(0.08) possibly_damaging(0.696) TCGA-EA-A410-01 16 75142365 75142366 - A ZNRF1 3'UTR 0.29 TCGA-EA-A410-01 16 75263832 75263832 C T BCAR1 Silent p.P776P 0.25 TCGA-EA-A410-01 16 75513267 75513267 C T CHST6 Missense_Mutation p.A154T 0.39 tolerated(0.25) benign(0.021) TCGA-EA-A410-01 16 777397 777397 G A HAGHL 5'UTR 0.23 TCGA-EA-A410-01 16 77859335 77859335 G A VAT1L Missense_Mutation p.V186M 0.48 deleterious(0) benign(0.31) TCGA-EA-A410-01 16 78065911 78065911 C A CLEC3A 3'UTR 0.06 TCGA-EA-A410-01 16 78142320 78142320 T C WWOX Silent p.N36N 0.47 TCGA-EA-A410-01 16 79630784 79630784 T - MAF Intron 0.33 TCGA-EA-A410-01 16 80718461 80718461 T C CDYL2 Missense_Mutation p.H197R 0.32 tolerated(0.53) benign(0.051) TCGA-EA-A410-01 16 81094902 81094902 C T C16orf46 Missense_Mutation p.R351Q 0.47 tolerated(0.93) benign(0) TCGA-EA-A410-01 16 81388145 81388146 TT - GAN Frame_Shift_Del p.F140Cfs*39 0.34 TCGA-EA-A410-01 16 81744980 81744980 A T CMIP 3'UTR 0.23 TCGA-EA-A410-01 16 83948922 83948922 C T MLYCD Missense_Mutation p.A437V 0.34 deleterious(0) probably_damaging(0.984) TCGA-EA-A410-01 16 84215992 84215992 G A TAF1C Silent p.G179G 0.20 TCGA-EA-A410-01 16 842546 842546 G - CHTF18 Frame_Shift_Del p.L481Sfs*3 0.40 TCGA-EA-A410-01 16 84529364 84529364 G A TLDC1 Silent p.S103S 0.44 TCGA-EA-A410-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.33 TCGA-EA-A410-01 16 86614451 86614452 - AG FOXL1 3'UTR 0.29 TCGA-EA-A410-01 16 8740025 8740025 G A METTL22 3'UTR 0.50 TCGA-EA-A410-01 16 87874062 87874062 A G SLC7A5 Missense_Mutation p.V263A 0.37 deleterious(0.01) possibly_damaging(0.816) TCGA-EA-A410-01 16 87925558 87925558 G A CA5A Silent p.D207D 0.47 TCGA-EA-A410-01 16 88110381 88110381 G A BANP 3'UTR 0.44 TCGA-EA-A410-01 16 88798876 88798876 C T PIEZO1 Missense_Mutation p.R953H 0.46 deleterious(0.02) benign(0.007) TCGA-EA-A410-01 16 88941493 88941493 G A CBFA2T3 3'UTR 0.35 TCGA-EA-A410-01 16 89167481 89167481 C T ACSF3 Missense_Mutation p.A131V 0.37 tolerated(0.37) benign(0.025) TCGA-EA-A410-01 16 89226818 89226818 A G ACSF3 3'Flank 0.49 TCGA-EA-A410-01 16 89783951 89783951 G A VPS9D1 Intron 0.32 TCGA-EA-A410-01 16 89930246 89930246 G A SPIRE2 Silent p.P585P 0.46 TCGA-EA-A410-01 16 89971470 89971470 G A TCF25 Missense_Mutation p.A532T 0.26 tolerated(0.08) benign(0.022) TCGA-EA-A410-01 16 89977593 89977593 G A TCF25 Missense_Mutation p.D660N 0.35 tolerated(0.2) benign(0.042) TCGA-EA-A410-01 16 8998348 8998348 T C USP7 Missense_Mutation p.I550V 0.29 tolerated(0.66) benign(0) TCGA-EA-A410-01 16 89985908 89985908 C T MC1R Missense_Mutation p.A81V 0.31 deleterious(0) possibly_damaging(0.764) TCGA-EA-A410-01 16 90001276 90001276 G - TUBB3 Frame_Shift_Del p.G141Afs*24 0.37 TCGA-EA-A410-01 16 90036742 90036743 - T CENPBD1 3'UTR 0.36 TCGA-EA-A410-01 16 9855976 9855976 T C GRIN2A 3'UTR 0.43 TCGA-EA-A410-01 17 10297589 10297589 G A MYH8 Missense_Mutation p.R1715C 0.42 deleterious(0.02) probably_damaging(0.982) TCGA-EA-A410-01 17 10355517 10355517 G A MYH4 Missense_Mutation p.A1160V 0.41 deleterious(0.05) benign(0.077) TCGA-EA-A410-01 17 11895959 11895959 C T ZNF18 Missense_Mutation p.R63Q 0.25 tolerated(0.11) probably_damaging(0.987) TCGA-EA-A410-01 17 12642606 12642606 C - MYOCD Frame_Shift_Del p.S229Afs*4 0.25 TCGA-EA-A410-01 17 12894516 12894516 A G ARHGAP44 3'UTR 0.45 TCGA-EA-A410-01 17 1368023 1368023 C T MYO1C 3'UTR 0.46 TCGA-EA-A410-01 17 1478722 1478722 G A SLC43A2 3'UTR 0.61 TCGA-EA-A410-01 17 1576707 1576707 G A PRPF8 Missense_Mutation p.R1201C 0.28 deleterious(0) probably_damaging(0.97) TCGA-EA-A410-01 17 1657583 1657583 G A SERPINF2 Missense_Mutation p.V411M 0.38 tolerated(0.07) possibly_damaging(0.543) TCGA-EA-A410-01 17 17046919 17046919 C - MPRIP Frame_Shift_Del p.L364Cfs*19 0.38 TCGA-EA-A410-01 17 17701005 17701005 C A RAI1 Silent p.S1581S 0.30 TCGA-EA-A410-01 17 1779082 1779082 G A RPA1 Silent p.Q194Q 0.38 TCGA-EA-A410-01 17 18923677 18923677 G A SLC5A10 Missense_Mutation p.R591H 0.35 deleterious(0.05) benign(0.249) TCGA-EA-A410-01 17 19316038 19316038 G A RNF112 Missense_Mutation p.R108Q 0.47 deleterious(0.03) possibly_damaging(0.52) TCGA-EA-A410-01 17 20769889 20769889 C T CCDC144NL Silent p.A181A 0.24 TCGA-EA-A410-01 17 21319295 21319295 G A KCNJ12 Missense_Mutation p.R214H 0.17 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 17 21319539 21319539 C T KCNJ12 Silent p.I295I 0.21 TCGA-EA-A410-01 17 2202284 2202284 G A SMG6 Missense_Mutation p.A588V 0.33 tolerated(0.06) possibly_damaging(0.878) TCGA-EA-A410-01 17 2290780 2290780 G A MNT Silent p.S388S 0.29 TCGA-EA-A410-01 17 25753567 25753567 G A TBC1D3P5 RNA 0.32 TCGA-EA-A410-01 17 2592685 2592685 A G CLUH 3'UTR 0.30 TCGA-EA-A410-01 17 2592977 2592977 G A CLUH 3'UTR 0.48 TCGA-EA-A410-01 17 25974057 25974057 C T LGALS9 Missense_Mutation p.P224L 0.34 tolerated(0.17) benign(0.002) TCGA-EA-A410-01 17 26522835 26522835 T - NLK 3'UTR 0.38 TCGA-EA-A410-01 17 26672325 26672325 A - TNFAIP1 3'UTR 0.33 TCGA-EA-A410-01 17 26726503 26726503 C T SARM1 3'UTR 0.50 TCGA-EA-A410-01 17 27064382 27064382 G A NEK8 Missense_Mutation p.R226Q 0.38 tolerated(0.14) benign(0.074) TCGA-EA-A410-01 17 27963004 27963004 C T SSH2 Missense_Mutation p.M721I 0.35 tolerated_low_confidence(0.64) benign(0.001) TCGA-EA-A410-01 17 28792113 28792113 A G CPD 3'UTR 0.35 TCGA-EA-A410-01 17 2888347 2888347 A - RAP1GAP2 Frame_Shift_Del p.A269Pfs*44 0.31 TCGA-EA-A410-01 17 29554303 29554303 C T NF1 Silent p.N773N 0.41 TCGA-EA-A410-01 17 29654801 29654801 T C NF1 Silent p.P1851P 0.11 TCGA-EA-A410-01 17 29701756 29701756 G - NF1 3'UTR 0.53 TCGA-EA-A410-01 17 30677329 30677329 C T ZNF207 Silent p.L9L 0.32 TCGA-EA-A410-01 17 3119721 3119721 C T OR1A1 Silent p.D269D 0.43 TCGA-EA-A410-01 17 33454354 33454354 C T FNDC8 Missense_Mutation p.T168M 0.52 deleterious(0.03) probably_damaging(0.999) TCGA-EA-A410-01 17 35487087 35487087 G A ACACA Missense_Mutation p.H1913Y 0.26 tolerated(1) probably_damaging(0.985) TCGA-EA-A410-01 17 35872724 35872724 G A DUSP14 Missense_Mutation p.R117H 0.43 tolerated(0.05) probably_damaging(0.998) TCGA-EA-A410-01 17 3629160 3629160 G A GSG2 Missense_Mutation p.R644H 0.44 tolerated(1) benign(0) TCGA-EA-A410-01 17 36483435 36483435 C T GPR179 Missense_Mutation p.G2006D 0.42 tolerated(1) benign(0) TCGA-EA-A410-01 17 36485978 36485978 G A GPR179 Silent p.N1158N 0.36 TCGA-EA-A410-01 17 36486757 36486757 G - GPR179 Frame_Shift_Del p.L899Cfs*70 0.33 TCGA-EA-A410-01 17 36687329 36687330 - C SRCIN1 3'UTR 0.39 TCGA-EA-A410-01 17 36876644 36876644 G A MLLT6 Silent p.A725A 0.33 TCGA-EA-A410-01 17 36891330 36891331 AT - PCGF2 3'UTR 0.32 TCGA-EA-A410-01 17 37676314 37676314 C T CDK12 Silent p.V1023V 0.28 TCGA-EA-A410-01 17 37818532 37818532 G A STARD3 Missense_Mutation p.V390M 0.43 tolerated(0.31) probably_damaging(0.943) TCGA-EA-A410-01 17 37822384 37822384 C T TCAP 3'UTR 0.34 TCGA-EA-A410-01 17 3786466 3786466 C T CAMKK1 Missense_Mutation p.R173H 0.47 deleterious(0) probably_damaging(0.992) TCGA-EA-A410-01 17 37866444 37866444 C A ERBB2 Missense_Mutation p.S250Y 0.49 deleterious(0) probably_damaging(0.994) TCGA-EA-A410-01 17 37985640 37985640 C A IKZF3 Missense_Mutation p.D55Y 0.28 deleterious(0) possibly_damaging(0.806) TCGA-EA-A410-01 17 3806567 3806567 G - P2RX1 Frame_Shift_Del p.L226Cfs*107 0.35 TCGA-EA-A410-01 17 3806912 3806912 G A P2RX1 Nonsense_Mutation p.R180* 0.36 TCGA-EA-A410-01 17 38126847 38126847 G A GSDMA Missense_Mutation p.G169S 0.50 tolerated(0.62) benign(0.161) TCGA-EA-A410-01 17 38179519 38179519 C T MED24 Silent p.R705R 0.27 TCGA-EA-A410-01 17 38191566 38191566 G A MED24 Silent p.C121C 0.30 TCGA-EA-A410-01 17 3828690 3828690 C T ATP2A3 3'UTR 0.32 TCGA-EA-A410-01 17 38711212 38711212 C T CCR7 Missense_Mutation p.A307T 0.51 tolerated(0.05) probably_damaging(0.998) TCGA-EA-A410-01 17 39019527 39019527 C T KRT12 Silent p.Q388Q 0.53 TCGA-EA-A410-01 17 39140421 39140421 G A KRT40 Silent p.P35P 0.39 TCGA-EA-A410-01 17 39672464 39672464 G A KRT15 Silent p.D264D 0.46 TCGA-EA-A410-01 17 39780477 39780477 C A KRT17 Silent p.L95L 0.34 TCGA-EA-A410-01 17 39994168 39994168 C T KLHL10 5'UTR 0.29 TCGA-EA-A410-01 17 40049403 40049403 C T ACLY Missense_Mutation p.R495H 0.45 tolerated(0.07) benign(0.001) TCGA-EA-A410-01 17 40723890 40723890 C T MLX 3'UTR 0.43 TCGA-EA-A410-01 17 40767153 40767153 G A TUBG1 3'UTR 0.38 TCGA-EA-A410-01 17 40838984 40838984 G A CNTNAP1 Missense_Mutation p.G322S 0.52 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 17 40963807 40963807 C T BECN1 Silent p.P350P 0.36 TCGA-EA-A410-01 17 40997219 40997219 G A AOC2 Silent p.S192S 0.44 TCGA-EA-A410-01 17 41132176 41132176 G T PTGES3L Nonsense_Mutation p.C8* 0.45 TCGA-EA-A410-01 17 41170788 41170788 C T VAT1 Missense_Mutation p.R139Q 0.43 tolerated(0.15) benign(0.025) TCGA-EA-A410-01 17 41246793 41246793 C T BRCA1 Missense_Mutation p.R252H 0.26 tolerated(1) benign(0) TCGA-EA-A410-01 17 41570257 41570257 C T DHX8 Missense_Mutation p.R238W 0.37 deleterious(0) possibly_damaging(0.539) TCGA-EA-A410-01 17 42089329 42089329 G A TMEM101 Silent p.F247F 0.28 TCGA-EA-A410-01 17 42194869 42194869 G A HDAC5 Silent p.N5N 0.35 TCGA-EA-A410-01 17 42744969 42744969 G T C17orf104 Nonsense_Mutation p.G564* 0.12 TCGA-EA-A410-01 17 43227526 43227531 GGAGCT - HEXIM1 In_Frame_Del p.E328_L329del 0.27 TCGA-EA-A410-01 17 43323080 43323080 C T FMNL1 Missense_Mutation p.R992C 0.26 deleterious(0.03) probably_damaging(1) TCGA-EA-A410-01 17 4446385 4446385 C T MYBBP1A Silent p.E905E 0.42 TCGA-EA-A410-01 17 45376746 45376746 C T ITGB3 Missense_Mutation p.T588M 0.47 deleterious(0.03) possibly_damaging(0.743) TCGA-EA-A410-01 17 46114218 46114218 T C COPZ2 Missense_Mutation p.K60R 0.40 deleterious(0.05) possibly_damaging(0.508) TCGA-EA-A410-01 17 46128959 46128959 C - NFE2L1 Frame_Shift_Del p.P162Qfs*6 0.40 TCGA-EA-A410-01 17 46135788 46135788 G - NFE2L1 Frame_Shift_Del p.G370Afs*44 0.25 TCGA-EA-A410-01 17 47300020 47300020 C T ABI3 Silent p.G348G 0.28 TCGA-EA-A410-01 17 47925258 47925258 T A TAC4 Missense_Mutation p.E41V 0.38 deleterious(0) probably_damaging(0.947) TCGA-EA-A410-01 17 4805050 4805050 C T C17orf107 3'UTR 0.50 TCGA-EA-A410-01 17 48156540 48156540 C T ITGA3 Missense_Mutation p.T834M 0.47 deleterious(0) probably_damaging(0.954) TCGA-EA-A410-01 17 48183315 48183315 C T PDK2 Silent p.G133G 0.41 TCGA-EA-A410-01 17 48265974 48265974 C T COL1A1 Missense_Mutation p.A1042T 0.26 unknown(0) TCGA-EA-A410-01 17 48356233 48356233 G A TMEM92 Missense_Mutation p.R81H 0.43 tolerated(0.53) possibly_damaging(0.809) TCGA-EA-A410-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.31 TCGA-EA-A410-01 17 48613888 48613888 C T EPN3 5'UTR 0.52 TCGA-EA-A410-01 17 48613960 48613960 C T EPN3 Missense_Mutation p.H15Y 0.35 deleterious(0) possibly_damaging(0.892) TCGA-EA-A410-01 17 48674173 48674173 G A CACNA1G Silent p.S1049S 0.37 TCGA-EA-A410-01 17 48676845 48676845 C T CACNA1G Silent p.S1105S 0.43 TCGA-EA-A410-01 17 48695442 48695442 T - CACNA1G Frame_Shift_Del p.F1755Sfs*39 0.43 TCGA-EA-A410-01 17 48745137 48745137 C A ABCC3 Intron 0.44 TCGA-EA-A410-01 17 4876952 4876952 C T CAMTA2 Missense_Mutation p.R733Q 0.34 deleterious(0.02) possibly_damaging(0.842) TCGA-EA-A410-01 17 48827902 48827902 C T LUC7L3 Silent p.S393S 0.44 TCGA-EA-A410-01 17 48828892 48828892 T - LUC7L3 3'UTR 0.45 TCGA-EA-A410-01 17 48941308 48941308 C T TOB1 Missense_Mutation p.R24H 0.38 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 17 5071267 5071267 C T USP6 Missense_Mutation p.A1026V 0.46 tolerated_low_confidence(0.24) possibly_damaging(0.692) TCGA-EA-A410-01 17 5074002 5074002 G - USP6 Frame_Shift_Del p.G1251Afs*14 0.34 TCGA-EA-A410-01 17 51900564 51900564 C T KIF2B Missense_Mutation p.T57M 0.39 deleterious(0.03) benign(0.134) TCGA-EA-A410-01 17 5353651 5353651 C T DHX33 Missense_Mutation p.V534I 0.42 tolerated(0.7) benign(0.05) TCGA-EA-A410-01 17 55944723 55944723 G A CUEDC1 Missense_Mutation p.A363V 0.58 tolerated_low_confidence(0.32) benign(0.047) TCGA-EA-A410-01 17 56585897 56585897 C T MTMR4 Silent p.A161A 0.47 TCGA-EA-A410-01 17 56694915 56694915 C T TEX14 Missense_Mutation p.S207N 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-EA-A410-01 17 57134362 57134362 T - TRIM37 Frame_Shift_Del p.N358Ifs*33 0.17 TCGA-EA-A410-01 17 57478100 57478100 C T YPEL2 3'UTR 0.42 TCGA-EA-A410-01 17 59561081 59561081 A - TBX4 3'UTR 0.44 TCGA-EA-A410-01 17 59876486 59876486 G A BRIP1 Nonsense_Mutation p.R439* 0.42 TCGA-EA-A410-01 17 59949649 59949649 T C INTS2 Missense_Mutation p.K927E 0.32 deleterious(0.01) benign(0.245) TCGA-EA-A410-01 17 60059758 60059758 G T MED13 Silent p.P1202P 0.40 TCGA-EA-A410-01 17 60349865 60349865 C A TBC1D3P2 RNA 0.33 TCGA-EA-A410-01 17 60766233 60766233 G A MRC2 Silent p.L1082L 0.46 TCGA-EA-A410-01 17 61557157 61557157 G A ACE Missense_Mutation p.R180Q 0.39 deleterious(0.04) probably_damaging(0.991) TCGA-EA-A410-01 17 61607592 61607592 T C KCNH6 Missense_Mutation p.S150P 0.39 tolerated(0.07) benign(0.002) TCGA-EA-A410-01 17 61667770 61667770 A - DCAF7 3'Flank 0.32 TCGA-EA-A410-01 17 61781923 61781923 T C STRADA Missense_Mutation p.N293S 0.39 tolerated(0.18) probably_damaging(0.999) TCGA-EA-A410-01 17 61841457 61841457 C T CCDC47 Missense_Mutation p.G156R 0.24 deleterious(0) probably_damaging(0.99) TCGA-EA-A410-01 17 62121269 62121269 G - ERN1 3'UTR 0.31 TCGA-EA-A410-01 17 62532819 62532819 C T CEP95 Missense_Mutation p.R724C 0.33 deleterious(0) benign(0.398) TCGA-EA-A410-01 17 62796950 62796950 G A PLEKHM1P RNA 0.27 TCGA-EA-A410-01 17 64025282 64025282 T C CEP112 Missense_Mutation p.I488V 0.44 tolerated(0.38) benign(0.005) TCGA-EA-A410-01 17 645051 645051 G A FAM57A 3'UTR 0.39 TCGA-EA-A410-01 17 65073827 65073827 C T HELZ 3'UTR 0.30 TCGA-EA-A410-01 17 6546436 6546437 - A TXNDC17 3'UTR 0.65 TCGA-EA-A410-01 17 66432546 66432546 C - WIPI1 Frame_Shift_Del p.V169Cfs*8 0.34 TCGA-EA-A410-01 17 67039646 67039646 G A ABCA9 Nonsense_Mutation p.R262* 0.31 TCGA-EA-A410-01 17 67148312 67148312 G T ABCA10 Silent p.S1423S 0.38 TCGA-EA-A410-01 17 70117955 70117955 G T SOX9 Missense_Mutation p.K141N 0.36 deleterious(0.01) benign(0.012) TCGA-EA-A410-01 17 7137633 7137633 C - DVL2 5'UTR 0.36 TCGA-EA-A410-01 17 71386491 71386491 G A SDK2 Missense_Mutation p.T1376M 0.43 deleterious(0) possibly_damaging(0.456) TCGA-EA-A410-01 17 72352951 72352951 C T BTBD17 Missense_Mutation p.A428T 0.45 tolerated(0.27) benign(0.385) TCGA-EA-A410-01 17 72367913 72367913 C T GPR142 Missense_Mutation p.T188I 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-EA-A410-01 17 7258585 7258585 G A TMEM95 Missense_Mutation p.R21H 0.55 tolerated(0.39) possibly_damaging(0.715) TCGA-EA-A410-01 17 72840569 72840569 A C GRIN2C Missense_Mutation p.L810R 0.34 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 17 72921703 72921703 C T OTOP2 Silent p.T122T 0.26 TCGA-EA-A410-01 17 73234307 73234307 G A GGA3 3'UTR 0.47 TCGA-EA-A410-01 17 7324849 7324849 C - SPEM1 Frame_Shift_Del p.L287* 0.12 TCGA-EA-A410-01 17 73496811 73496811 G - CASKIN2 3'UTR 0.50 TCGA-EA-A410-01 17 73498246 73498246 G A CASKIN2 Missense_Mutation p.P970L 0.42 tolerated(0.06) benign(0.001) TCGA-EA-A410-01 17 73617194 73617194 C T MYO15B RNA 0.27 TCGA-EA-A410-01 17 74078479 74078479 C T EXOC7 3'UTR 0.41 TCGA-EA-A410-01 17 74271974 74271974 G A QRICH2 Missense_Mutation p.P1637L 0.37 tolerated(0.06) benign(0.009) TCGA-EA-A410-01 17 7454154 7454154 G A TNFSF12 Missense_Mutation p.A108T 0.38 deleterious_low_confidence(0) possibly_damaging(0.531) TCGA-EA-A410-01 17 7466794 7466794 G A SENP3 Missense_Mutation p.R134Q 0.43 tolerated_low_confidence(0.06) benign(0.238) TCGA-EA-A410-01 17 74878332 74878332 G A MGAT5B Missense_Mutation p.S105N 0.48 tolerated(0.42) benign(0.012) TCGA-EA-A410-01 17 74900438 74900438 C - MGAT5B Frame_Shift_Del p.P221Rfs*34 0.38 TCGA-EA-A410-01 17 7496122 7496122 G - FXR2 Frame_Shift_Del p.P540Qfs*32 0.38 TCGA-EA-A410-01 17 75189591 75189591 A - SEC14L1 Frame_Shift_Del p.I147Lfs*3 0.26 TCGA-EA-A410-01 17 75210079 75210079 C T SEC14L1 Missense_Mutation p.H708Y 0.34 tolerated(1) benign(0.064) TCGA-EA-A410-01 17 76046980 76046980 A - TNRC6C Frame_Shift_Del p.N615Mfs*45 0.48 TCGA-EA-A410-01 17 76799892 76799892 T G USP36 Silent p.P795P 0.34 TCGA-EA-A410-01 17 76968098 76968098 C T LGALS3BP Missense_Mutation p.V440I 0.30 tolerated(0.39) benign(0.002) TCGA-EA-A410-01 17 77081357 77081357 C - ENGASE Frame_Shift_Del p.T547Pfs*14 0.31 TCGA-EA-A410-01 17 77705081 77705081 C T ENPP7 Silent p.D60D 0.34 TCGA-EA-A410-01 17 7812028 7812028 C T CHD3 Missense_Mutation p.R1818W 0.38 possibly_damaging(0.898) TCGA-EA-A410-01 17 78441279 78441279 T C NPTX1 3'UTR 0.45 TCGA-EA-A410-01 17 78882693 78882693 C T RPTOR Silent p.D828D 0.30 TCGA-EA-A410-01 17 78935253 78935253 G A RPTOR Missense_Mutation p.R1222H 0.30 tolerated(0.19) benign(0) TCGA-EA-A410-01 17 78938119 78938119 C T RPTOR Missense_Mutation p.R1333C 0.25 deleterious(0) possibly_damaging(0.708) TCGA-EA-A410-01 17 79234137 79234137 C T SLC38A10 Missense_Mutation p.V397M 0.33 deleterious(0.02) probably_damaging(0.987) TCGA-EA-A410-01 17 79412663 79412663 G T RP11-1055B8.7 Missense_Mutation p.G1040V 0.54 benign(0.107) TCGA-EA-A410-01 17 79495811 79495811 G A FSCN2 Missense_Mutation p.G85D 0.62 tolerated(0.28) benign(0.012) TCGA-EA-A410-01 17 79507882 79507882 T C C17orf70 Missense_Mutation p.Y870C 0.30 deleterious(0) probably_damaging(0.992) TCGA-EA-A410-01 17 79514684 79514684 G A C17orf70 Missense_Mutation p.A475V 0.40 deleterious(0) probably_damaging(0.987) TCGA-EA-A410-01 17 79526350 79526350 G A NPLOC4 Missense_Mutation p.H588Y 0.38 deleterious(0.03) probably_damaging(0.952) TCGA-EA-A410-01 17 79620234 79620234 C T PDE6G Silent p.Q34Q 0.38 TCGA-EA-A410-01 17 79825981 79825981 T C ARHGDIA 3'UTR 0.39 TCGA-EA-A410-01 17 80049262 80049262 C T FASN Missense_Mutation p.R443Q 0.67 tolerated(0.67) benign(0) TCGA-EA-A410-01 17 8013799 8013799 G - ALOXE3 Frame_Shift_Del p.T468Pfs*4 0.12 TCGA-EA-A410-01 17 80196593 80196593 C T SLC16A3 Missense_Mutation p.A380V 0.58 tolerated(0.58) benign(0.077) TCGA-EA-A410-01 17 80206876 80206876 G - CSNK1D Frame_Shift_Del p.R358Gfs*12 0.37 TCGA-EA-A410-01 17 80788264 80788264 C T ZNF750 Silent p.A642A 0.43 TCGA-EA-A410-01 17 80888428 80888428 T C TBCD Missense_Mutation p.Y1008H 0.52 tolerated(0.13) benign(0.12) TCGA-EA-A410-01 17 8638891 8638891 C T CCDC42 Silent p.T177T 0.51 TCGA-EA-A410-01 18 10774021 10774021 T C PIEZO2 Intron 0.44 TCGA-EA-A410-01 18 10871393 10871393 C T PIEZO2 Missense_Mutation p.G117D 0.41 deleterious(0.02) probably_damaging(1) TCGA-EA-A410-01 18 12802084 12802087 TTAT - PTPN2 Frame_Shift_Del p.I308* 0.45 TCGA-EA-A410-01 18 13825968 13825968 C A MC5R Missense_Mutation p.H68Q 0.44 tolerated(0.09) probably_damaging(0.998) TCGA-EA-A410-01 18 21125028 21125028 G A NPC1 Missense_Mutation p.R615C 0.32 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 18 29040899 29040899 A G DSG3 Missense_Mutation p.N263S 0.30 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 18 29339732 29339732 C T SLC25A52 Silent p.%3D 0.42 TCGA-EA-A410-01 18 29522913 29522914 - C TRAPPC8 5'UTR 0.29 TCGA-EA-A410-01 18 32467966 32467966 A - DTNA Intron 0.55 TCGA-EA-A410-01 18 44036568 44036568 A G RNF165 Missense_Mutation p.D337G 0.34 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 18 44268862 44268862 C T ST8SIA5 Missense_Mutation p.C111Y 0.35 probably_damaging(0.971) TCGA-EA-A410-01 18 44579258 44579258 G A KATNAL2 5'UTR 0.35 TCGA-EA-A410-01 18 45567076 45567076 C - ZBTB7C Frame_Shift_Del p.E135Rfs*87 0.36 TCGA-EA-A410-01 18 47016863 47016863 C T RPL17 Silent p.L92L 0.44 TCGA-EA-A410-01 18 47429125 47429125 G A MYO5B Missense_Mutation p.R884W 0.28 tolerated(0.12) probably_damaging(0.977) TCGA-EA-A410-01 18 47801793 47801793 G A MBD1 Intron 0.46 TCGA-EA-A410-01 18 47802039 47802039 G - MBD1 Frame_Shift_Del p.I242Sfs*80 0.47 TCGA-EA-A410-01 18 48605250 48605250 T C SMAD4 3'UTR 0.32 TCGA-EA-A410-01 18 50976892 50976892 C - DCC Frame_Shift_Del p.P1086Rfs*15 0.28 TCGA-EA-A410-01 18 5397204 5397204 C T EPB41L3 Silent p.T898T 0.27 TCGA-EA-A410-01 18 55150365 55150365 A G ONECUT2 3'UTR 0.22 TCGA-EA-A410-01 18 55150366 55150366 G A ONECUT2 3'UTR 0.22 TCGA-EA-A410-01 18 55153929 55153929 T - ONECUT2 3'UTR 0.23 TCGA-EA-A410-01 18 55247367 55247367 G A FECH Silent p.A44A 0.16 TCGA-EA-A410-01 18 60646176 60646176 G A PHLPP1 Missense_Mutation p.V1556I 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-EA-A410-01 18 64235680 64235680 C T CDH19 Missense_Mutation p.A155T 0.41 deleterious(0.04) benign(0.394) TCGA-EA-A410-01 18 6914974 6914975 - A ARHGAP28 3'UTR 0.35 TCGA-EA-A410-01 18 72632560 72632560 C T ZNF407 Silent p.Y1780Y 0.33 TCGA-EA-A410-01 18 77917643 77917643 C A PARD6G 3'UTR 0.49 TCGA-EA-A410-01 18 8825238 8825238 A G SOGA2 Missense_Mutation p.R1244G 0.30 tolerated(0.11) benign(0.012) TCGA-EA-A410-01 18 9182403 9182405 AAG - ANKRD12 5'UTR 0.27 TCGA-EA-A410-01 18 9182466 9182466 T C ANKRD12 Silent p.S12S 0.51 TCGA-EA-A410-01 18 9257657 9257657 T - ANKRD12 Frame_Shift_Del p.L1466Yfs*70 0.33 TCGA-EA-A410-01 19 1008188 1008188 C T GRIN3B Silent p.S788S 0.46 TCGA-EA-A410-01 19 10370465 10370465 A G MRPL4 Silent p.P304P 0.06 TCGA-EA-A410-01 19 10395682 10395682 C T ICAM1 Silent p.R468R 0.35 TCGA-EA-A410-01 19 10579158 10579158 C - PDE4A 3'UTR 0.36 TCGA-EA-A410-01 19 10668527 10668527 G A KRI1 Silent p.R474R 0.48 TCGA-EA-A410-01 19 10794119 10794119 C A ILF3 Silent p.A588A 0.31 TCGA-EA-A410-01 19 1107645 1107645 A - SBNO2 3'UTR 0.57 TCGA-EA-A410-01 19 11152012 11152012 C T SMARCA4 Silent p.I1400I 0.41 TCGA-EA-A410-01 19 11559764 11559764 C T PRKCSH Missense_Mutation p.S434L 0.30 deleterious(0) possibly_damaging(0.821) TCGA-EA-A410-01 19 11564773 11564773 T - ELAVL3 3'UTR 0.24 TCGA-EA-A410-01 19 11664070 11664070 C T ELOF1 3'UTR 0.29 TCGA-EA-A410-01 19 11891996 11891996 G A ZNF441 Missense_Mutation p.G453R 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-EA-A410-01 19 11942915 11942916 - A ZNF440 Frame_Shift_Ins p.N310Kfs*4 0.27 TCGA-EA-A410-01 19 11944683 11944683 C A ZNF440 3'UTR 0.50 TCGA-EA-A410-01 19 1235017 1235017 C T C19orf26 Silent p.T146T 0.77 TCGA-EA-A410-01 19 12774252 12774252 G A MAN2B1 Missense_Mutation p.P263L 0.38 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 19 13011312 13011312 C T SYCE2 Missense_Mutation p.V153M 0.41 tolerated(0.17) possibly_damaging(0.801) TCGA-EA-A410-01 19 13226130 13226130 C T TRMT1 Missense_Mutation p.V202M 0.49 deleterious(0.01) probably_damaging(0.909) TCGA-EA-A410-01 19 1438405 1438407 TCT - RPS15 5'UTR 0.44 TCGA-EA-A410-01 19 14492214 14492215 - C CD97 5'Flank 0.33 TCGA-EA-A410-01 19 14829571 14829571 T - ZNF333 Frame_Shift_Del p.F478Lfs*16 0.32 TCGA-EA-A410-01 19 15198070 15198070 A G OR1I1 Missense_Mutation p.N65S 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-EA-A410-01 19 15226191 15226191 G A ILVBL Missense_Mutation p.R591W 0.40 deleterious(0) possibly_damaging(0.773) TCGA-EA-A410-01 19 1556591 1556591 C T MEX3D Silent p.T309T 0.45 TCGA-EA-A410-01 19 15648407 15648407 C T CYP4F22 Silent p.P161P 0.42 TCGA-EA-A410-01 19 1611195 1611195 A - TCF3 3'UTR 0.31 TCGA-EA-A410-01 19 16437882 16437882 T C KLF2 3'UTR 0.30 TCGA-EA-A410-01 19 16636339 16636339 G A CHERP Silent p.D485D 0.60 TCGA-EA-A410-01 19 17329240 17329240 C T USE1 Intron 0.38 TCGA-EA-A410-01 19 17728645 17728645 G A UNC13A Missense_Mutation p.A1475V 0.42 deleterious(0) probably_damaging(0.977) TCGA-EA-A410-01 19 17992870 17992870 C A SLC5A5 Missense_Mutation p.S387Y 0.45 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 19 18280515 18280515 G A PIK3R2 3'UTR 0.31 TCGA-EA-A410-01 19 18280589 18280589 G A PIK3R2 3'UTR 0.39 TCGA-EA-A410-01 19 18308302 18308302 G A RAB3A Missense_Mutation p.P214L 0.48 tolerated(0.55) benign(0.001) TCGA-EA-A410-01 19 18309614 18309614 C T RAB3A Silent p.L131L 0.46 TCGA-EA-A410-01 19 18361261 18361261 C T PDE4C 5'UTR 0.53 TCGA-EA-A410-01 19 18367997 18367997 C T KIAA1683 Missense_Mutation p.G1366D 0.35 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 19 18378255 18378255 G A KIAA1683 Missense_Mutation p.A32V 0.40 deleterious(0.04) benign(0.302) TCGA-EA-A410-01 19 18546659 18546659 G A ISYNA1 Missense_Mutation p.R350C 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-EA-A410-01 19 1877323 1877323 C T ABHD17A Missense_Mutation p.C321Y 0.38 deleterious(0) probably_damaging(0.986) TCGA-EA-A410-01 19 18887993 18887993 C - CRTC1 Frame_Shift_Del p.S588Afs*6 0.48 TCGA-EA-A410-01 19 18976409 18976409 G A UPF1 Missense_Mutation p.R1020H 0.42 tolerated(0.38) benign(0.352) TCGA-EA-A410-01 19 1913339 1913339 C - ADAT3 3'UTR 0.24 TCGA-EA-A410-01 19 19135584 19135584 G A SUGP2 Nonsense_Mutation p.R525* 0.42 TCGA-EA-A410-01 19 19638883 19638883 G A NDUFA13 Missense_Mutation p.R128H 0.39 tolerated_low_confidence(0.05) probably_damaging(0.911) TCGA-EA-A410-01 19 19757041 19757041 C T ATP13A1 Missense_Mutation p.R1074H 0.27 tolerated(0.21) benign(0.001) TCGA-EA-A410-01 19 19764641 19764641 G A ATP13A1 Silent p.R684R 0.41 TCGA-EA-A410-01 19 2038246 2038247 - T MKNK2 3'UTR 0.30 TCGA-EA-A410-01 19 20735324 20735324 T - ZNF737 Frame_Shift_Del p.K61Nfs*3 0.23 TCGA-EA-A410-01 19 2109203 2109203 G A AP3D1 Silent p.D1118D 0.35 TCGA-EA-A410-01 19 21992087 21992087 T - ZNF43 Frame_Shift_Del p.N251Ifs*28 0.26 TCGA-EA-A410-01 19 2337486 2337486 C T SPPL2B RNA 0.34 TCGA-EA-A410-01 19 2338759 2338759 G - SPPL2B RNA 0.32 TCGA-EA-A410-01 19 2339154 2339154 T C SPPL2B RNA 0.33 TCGA-EA-A410-01 19 23406702 23406702 T - ZNF724P Frame_Shift_Del p.G116Afs*22 0.32 TCGA-EA-A410-01 19 2408394 2408394 A G TMPRSS9 Missense_Mutation p.T261A 0.43 deleterious(0.02) benign(0.314) TCGA-EA-A410-01 19 30498497 30498497 G A URI1 Missense_Mutation p.R213Q 0.15 deleterious(0) possibly_damaging(0.781) TCGA-EA-A410-01 19 312271 312271 G A MIER2 Missense_Mutation p.A270V 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-EA-A410-01 19 31767600 31767600 G - TSHZ3 Frame_Shift_Del p.E1034Rfs*45 0.32 TCGA-EA-A410-01 19 32877751 32877751 A - ZNF507 3'UTR 0.43 TCGA-EA-A410-01 19 33113435 33113435 G A ANKRD27 Missense_Mutation p.R574C 0.41 deleterious(0) possibly_damaging(0.898) TCGA-EA-A410-01 19 33585142 33585142 C T GPATCH1 Nonsense_Mutation p.R174* 0.47 TCGA-EA-A410-01 19 34291394 34291394 C T KCTD15 Missense_Mutation p.S12L 0.41 tolerated_low_confidence(0.33) benign(0.32) TCGA-EA-A410-01 19 34718608 34718608 T - LSM14A 3'UTR 0.57 TCGA-EA-A410-01 19 34845762 34845762 T C KIAA0355 3'UTR 0.04 TCGA-EA-A410-01 19 35716084 35716084 G - FAM187B Frame_Shift_Del p.L252* 0.32 TCGA-EA-A410-01 19 35757266 35757266 T C LSR Silent p.Y309Y 0.39 TCGA-EA-A410-01 19 35770658 35770659 - A USF2 3'UTR 0.26 TCGA-EA-A410-01 19 35979354 35979354 C T KRTDAP Missense_Mutation p.A68T 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-EA-A410-01 19 36018763 36018763 C T SBSN Missense_Mutation p.G141R 0.48 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 19 3620125 3620125 C T CACTIN Missense_Mutation p.R295H 0.27 deleterious(0) probably_damaging(0.98) TCGA-EA-A410-01 19 36230236 36230236 G T IGFLR1 Missense_Mutation p.A338E 0.21 tolerated(0.14) benign(0.063) TCGA-EA-A410-01 19 36244125 36244125 C T LIN37 Missense_Mutation p.P139S 0.29 deleterious(0.02) benign(0.165) TCGA-EA-A410-01 19 3759791 3759791 C - APBA3 Frame_Shift_Del p.A158Pfs*24 0.35 TCGA-EA-A410-01 19 37880227 37880227 C T ZNF527 Missense_Mutation p.R426C 0.38 tolerated(0.07) probably_damaging(0.969) TCGA-EA-A410-01 19 38023375 38023375 G A ZNF793 Missense_Mutation p.V45I 0.42 tolerated(0.48) benign(0.07) TCGA-EA-A410-01 19 38655214 38655214 C - SIPA1L3 Frame_Shift_Del p.L1294Wfs*199 0.36 TCGA-EA-A410-01 19 38698930 38698930 T - SIPA1L3 3'UTR 0.37 TCGA-EA-A410-01 19 38948717 38948717 G A RYR1 Missense_Mutation p.R651Q 0.35 possibly_damaging(0.49) TCGA-EA-A410-01 19 38954087 38954087 C T RYR1 Missense_Mutation p.R868C 0.43 probably_damaging(0.993) TCGA-EA-A410-01 19 39361334 39361334 C T RINL Silent p.T300T 0.24 TCGA-EA-A410-01 19 39369917 39369917 C T SIRT2 Missense_Mutation p.A350T 0.33 tolerated(0.35) benign(0.041) TCGA-EA-A410-01 19 39664215 39664215 G - PAK4 Splice_Site p.X223_splice 0.35 TCGA-EA-A410-01 19 3982314 3982314 C - EEF2 Frame_Shift_Del p.E241Rfs*13 0.45 TCGA-EA-A410-01 19 39899071 39899071 C - ZFP36 Frame_Shift_Del p.L246Wfs*126 0.36 TCGA-EA-A410-01 19 40876118 40876118 A G PLD3 Missense_Mutation p.N218D 0.34 deleterious(0) possibly_damaging(0.761) TCGA-EA-A410-01 19 41030455 41030455 C A SPTBN4 Intron 0.29 TCGA-EA-A410-01 19 41123109 41123109 C T LTBP4 Missense_Mutation p.R1083W 0.42 deleterious(0.01) possibly_damaging(0.847) TCGA-EA-A410-01 19 41132911 41132911 C - LTBP4 Frame_Shift_Del p.A1408Hfs*20 0.38 TCGA-EA-A410-01 19 41173152 41173152 G A NUMBL 3'UTR 0.43 TCGA-EA-A410-01 19 41405885 41405885 G A CYP2G1P RNA 0.28 TCGA-EA-A410-01 19 41447198 41447198 C T CYP2B7P Intron 0.40 TCGA-EA-A410-01 19 41712474 41712474 C T CYP2S1 3'UTR 0.37 TCGA-EA-A410-01 19 42593048 42593048 C T POU2F2 3'Flank 0.40 TCGA-EA-A410-01 19 4262043 4262045 GAG - CCDC94 In_Frame_Del p.E214del 0.45 TCGA-EA-A410-01 19 42729144 42729145 TA - ZNF526 Frame_Shift_Del p.Y197* 0.42 TCGA-EA-A410-01 19 42797951 42797951 C - CIC Frame_Shift_Del p.P1336Rfs*3 0.33 TCGA-EA-A410-01 19 4333784 4333784 A G STAP2 Silent p.F68F 0.38 TCGA-EA-A410-01 19 4355140 4355140 C T MPND Silent p.D322D 0.07 TCGA-EA-A410-01 19 43683081 43683081 C T PSG5 Intron 0.40 TCGA-EA-A410-01 19 44097384 44097384 G A IRGQ Silent p.S222S 0.39 TCGA-EA-A410-01 19 44097437 44097437 C T IRGQ Missense_Mutation p.G205S 0.39 deleterious(0.04) probably_damaging(1) TCGA-EA-A410-01 19 44118352 44118352 C T SRRM5 Silent p.A693A 0.31 TCGA-EA-A410-01 19 45406936 45406936 A - TOMM40 3'Flank 0.47 TCGA-EA-A410-01 19 4552597 4552597 G - SEMA6B Frame_Shift_Del p.R276Afs*11 0.12 TCGA-EA-A410-01 19 45575023 45575023 C T ZNF296 Missense_Mutation p.A422T 0.36 tolerated(0.13) benign(0.082) TCGA-EA-A410-01 19 45783898 45783898 C A MARK4 Silent p.T394T 0.36 TCGA-EA-A410-01 19 45806616 45806616 C - MARK4 3'UTR 0.42 TCGA-EA-A410-01 19 45977715 45977715 C T FOSB 3'UTR 0.43 TCGA-EA-A410-01 19 46216621 46216621 C T FBXO46 Missense_Mutation p.E45K 0.18 tolerated(0.35) benign(0.026) TCGA-EA-A410-01 19 46326034 46326034 C T SYMPK Missense_Mutation p.R924H 0.43 deleterious(0) probably_damaging(0.989) TCGA-EA-A410-01 19 46388594 46388594 C T IRF2BP1 Missense_Mutation p.A147T 0.13 tolerated(0.15) benign(0.035) TCGA-EA-A410-01 19 464035 464035 G A ODF3L2 Missense_Mutation p.R227W 0.32 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 19 4652770 4652770 C T TNFAIP8L1 3'UTR 0.41 TCGA-EA-A410-01 19 4653019 4653019 A - TNFAIP8L1 3'UTR 0.23 TCGA-EA-A410-01 19 47228599 47228599 G A STRN4 Missense_Mutation p.R495W 0.46 deleterious(0) probably_damaging(0.928) TCGA-EA-A410-01 19 47261187 47261187 C T FKRP 3'UTR 0.43 TCGA-EA-A410-01 19 47823728 47823728 C T C5AR1 Missense_Mutation p.R232C 0.43 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 19 48198695 48198695 C T GLTSCR1 Silent p.A1050A 0.36 TCGA-EA-A410-01 19 48956114 48956114 G A GRWD1 Silent p.A391A 0.45 TCGA-EA-A410-01 19 49245150 49245150 G A IZUMO1 Missense_Mutation p.T217I 0.34 tolerated(0.25) benign(0.064) TCGA-EA-A410-01 19 49442790 49442790 C T DHDH Missense_Mutation p.R151W 0.34 deleterious(0.01) possibly_damaging(0.598) TCGA-EA-A410-01 19 49469965 49469965 C T FTL Silent p.F167F 0.38 TCGA-EA-A410-01 19 49573779 49573779 C T KCNA7 Silent p.T304T 0.35 TCGA-EA-A410-01 19 49657445 49657445 G A HRC Silent p.D350D 0.36 TCGA-EA-A410-01 19 49813624 49813624 A G SLC6A16 Missense_Mutation p.Y187H 0.35 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 19 49838733 49838733 C A CD37 5'UTR 0.56 TCGA-EA-A410-01 19 49850473 49850473 G - TEAD2 Frame_Shift_Del p.H299Mfs*12 0.39 TCGA-EA-A410-01 19 50105088 50105088 C T PRR12 Silent p.D1562D 0.35 TCGA-EA-A410-01 19 50385612 50385612 G A TBC1D17 Silent p.P251P 0.35 TCGA-EA-A410-01 19 50398358 50398359 - C IL4I1 Frame_Shift_Ins p.E133Gfs*97 0.35 TCGA-EA-A410-01 19 50735252 50735252 G A MYH14 Missense_Mutation p.G347S 0.32 deleterious(0.05) benign(0.044) TCGA-EA-A410-01 19 50958485 50958485 G A MYBPC2 Missense_Mutation p.R712H 0.44 deleterious(0) probably_damaging(0.992) TCGA-EA-A410-01 19 50984166 50984166 C T EMC10 Missense_Mutation p.R204C 0.34 deleterious(0) probably_damaging(0.984) TCGA-EA-A410-01 19 51021665 51021665 C T LRRC4B Silent p.T435T 0.39 TCGA-EA-A410-01 19 51022486 51022486 C T LRRC4B Missense_Mutation p.E162K 0.34 deleterious(0) possibly_damaging(0.892) TCGA-EA-A410-01 19 51200356 51200356 C A SHANK1 Missense_Mutation p.G654V 0.43 probably_damaging(0.929) TCGA-EA-A410-01 19 51483079 51483079 C T KLK7 Missense_Mutation p.A191T 0.41 deleterious(0.02) possibly_damaging(0.834) TCGA-EA-A410-01 19 51503501 51503501 G A KLK8 Missense_Mutation p.R127C 0.32 deleterious(0.02) benign(0.337) TCGA-EA-A410-01 19 51917036 51917036 G A SIGLEC10 Missense_Mutation p.P584L 0.35 tolerated(0.54) benign(0.008) TCGA-EA-A410-01 19 51955661 51955661 T C SIGLEC8 Missense_Mutation p.N491S 0.33 tolerated_low_confidence(0.59) benign(0.002) TCGA-EA-A410-01 19 51961623 51961623 G A SIGLEC8 Silent p.L7L 0.50 TCGA-EA-A410-01 19 51986291 51986291 C A CEACAM18 Missense_Mutation p.L293M 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-EA-A410-01 19 52129355 52129355 C T SIGLEC5 Missense_Mutation p.R465H 0.20 tolerated(0.53) benign(0.052) TCGA-EA-A410-01 19 52222546 52222546 G A HAS1 Silent p.C205C 0.34 TCGA-EA-A410-01 19 52568370 52568370 A G ZNF841 Missense_Mutation p.I922T 0.30 deleterious_low_confidence(0.02) benign(0.099) TCGA-EA-A410-01 19 53117856 53117856 G A ZNF83 5'UTR 0.52 TCGA-EA-A410-01 19 54080094 54080094 C T ZNF331 Missense_Mutation p.R94C 0.27 deleterious(0.04) benign(0.064) TCGA-EA-A410-01 19 54314476 54314476 C T NLRP12 Missense_Mutation p.R146H 0.46 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 19 54385608 54385609 - T PRKCG 5'UTR 0.31 TCGA-EA-A410-01 19 54515237 54515237 C T CACNG6 Missense_Mutation p.R193W 0.34 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 19 54598443 54598443 C T OSCAR 3'UTR 0.34 TCGA-EA-A410-01 19 54653414 54653414 C T CNOT3 Missense_Mutation p.T509M 0.40 deleterious(0.01) possibly_damaging(0.791) TCGA-EA-A410-01 19 54660654 54660654 G - LENG1 Frame_Shift_Del p.P141Rfs*127 0.34 TCGA-EA-A410-01 19 54673272 54673272 C T TMC4 Silent p.A146A 0.53 TCGA-EA-A410-01 19 54972475 54972475 G - LENG8 3'UTR 0.27 TCGA-EA-A410-01 19 55019321 55019321 G A LAIR2 Missense_Mutation p.A96T 0.44 tolerated(0.06) possibly_damaging(0.893) TCGA-EA-A410-01 19 55341432 55341432 C T KIR3DL1 Silent p.S385S 0.39 TCGA-EA-A410-01 19 55450955 55450955 G A NLRP7 Missense_Mutation p.A411V 0.36 tolerated(0.15) benign(0.019) TCGA-EA-A410-01 19 55525880 55525880 C T GP6 Missense_Mutation p.G478D 0.29 deleterious_low_confidence(0) benign(0.441) TCGA-EA-A410-01 19 55591523 55591523 C T EPS8L1 Silent p.G102G 0.37 TCGA-EA-A410-01 19 55606695 55606695 G A PPP1R12C Missense_Mutation p.P473L 0.39 deleterious(0) benign(0.054) TCGA-EA-A410-01 19 55738690 55738690 C T AC010327.2 Missense_Mutation p.R18C 0.34 benign(0) TCGA-EA-A410-01 19 55815133 55815133 G - BRSK1 Frame_Shift_Del p.G410Vfs*36 0.29 TCGA-EA-A410-01 19 55869532 55869532 C T FAM71E2 Missense_Mutation p.V902I 0.39 tolerated(0.53) benign(0.001) TCGA-EA-A410-01 19 55994168 55994168 G A ZNF628 Silent p.R536R 0.45 TCGA-EA-A410-01 19 56160222 56160222 T C CCDC106 5'UTR 0.45 TCGA-EA-A410-01 19 56206237 56206237 G A EPN1 Silent p.T556T 0.21 TCGA-EA-A410-01 19 56600220 56600220 C T ZNF787 Silent p.S107S 0.40 TCGA-EA-A410-01 19 57175895 57175895 G A ZNF835 Silent p.C224C 0.31 TCGA-EA-A410-01 19 57176138 57176138 G A ZNF835 Silent p.C143C 0.33 TCGA-EA-A410-01 19 57176222 57176222 G A ZNF835 Silent p.C115C 0.34 TCGA-EA-A410-01 19 57772938 57772938 T - CTC-444N24.8 RNA 0.26 TCGA-EA-A410-01 19 58050207 58050207 C T ZNF549 Missense_Mutation p.P612L 0.32 deleterious(0) probably_damaging(0.956) TCGA-EA-A410-01 19 58193535 58193535 C T ZNF551 Missense_Mutation p.P2S 0.29 tolerated_low_confidence(0.1) benign(0.027) TCGA-EA-A410-01 19 58551885 58551885 T C ZSCAN1 Silent p.S146S 0.50 TCGA-EA-A410-01 19 58868198 58868198 G A ZNF497 Silent p.H268H 0.61 TCGA-EA-A410-01 19 619749 619749 C A POLRMT Missense_Mutation p.R968M 0.38 deleterious(0.05) benign(0.309) TCGA-EA-A410-01 19 6364536 6364536 C T CLPP Silent p.C147C 0.33 TCGA-EA-A410-01 19 6381587 6381587 C T GTF2F1 Silent p.P292P 0.06 TCGA-EA-A410-01 19 6430131 6430131 C - SLC25A41 Frame_Shift_Del p.L136Yfs*75 0.39 TCGA-EA-A410-01 19 6444283 6444283 G A SLC25A23 Silent p.Y367Y 0.34 TCGA-EA-A410-01 19 6665210 6665210 G A TNFSF14 Silent p.G150G 0.42 TCGA-EA-A410-01 19 681743 681743 C - FSTL3 3'UTR 0.41 TCGA-EA-A410-01 19 7132218 7132218 C T INSR Silent p.A931A 0.40 TCGA-EA-A410-01 19 747646 747646 C - PALM 3'UTR 0.36 TCGA-EA-A410-01 19 7536811 7536811 G A ARHGEF18 3'UTR 0.33 TCGA-EA-A410-01 19 7707366 7707366 C T STXBP2 Silent p.D282D 0.30 TCGA-EA-A410-01 19 8130578 8130578 G A FBN3 3'UTR 0.54 TCGA-EA-A410-01 19 8368904 8368904 C T CD320 Missense_Mutation p.V113I 0.39 tolerated(1) benign(0.003) TCGA-EA-A410-01 19 8586061 8586061 C - MYO1F 3'UTR 0.51 TCGA-EA-A410-01 19 8609341 8609341 G - MYO1F Frame_Shift_Del p.P455Qfs*4 0.30 TCGA-EA-A410-01 19 8808515 8808515 C T ACTL9 Silent p.S179S 0.42 TCGA-EA-A410-01 19 9643580 9643580 C T ZNF426 Missense_Mutation p.S89N 0.44 tolerated(0.21) benign(0.003) TCGA-EA-A410-01 19 9770131 9770131 C A ZNF562 Missense_Mutation p.R13M 0.39 deleterious(0.01) possibly_damaging(0.846) TCGA-EA-A410-01 1 103342668 103342668 A - COL11A1 3'UTR 0.48 TCGA-EA-A410-01 1 10425209 10425209 G A KIF1B Missense_Mutation p.R1427Q 0.60 deleterious(0.01) probably_damaging(0.975) TCGA-EA-A410-01 1 104297397 104297397 G A AMY1C Missense_Mutation p.M354I 0.35 deleterious(0.02) benign(0.054) TCGA-EA-A410-01 1 10523563 10523563 G A DFFA Missense_Mutation p.R186C 0.33 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 1 10715819 10715819 G A CASZ1 Missense_Mutation p.R518C 0.05 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 1 109243045 109243045 C T PRPF38B 3'UTR 0.12 TCGA-EA-A410-01 1 109479990 109479990 G A CLCC1 Silent p.G364G 0.31 TCGA-EA-A410-01 1 110032957 110032957 G A ATXN7L2 Missense_Mutation p.R434Q 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-EA-A410-01 1 110607490 110607490 G - ALX3 Frame_Shift_Del p.Q105Sfs*88 0.39 TCGA-EA-A410-01 1 111777632 111777632 A G CHI3L2 Missense_Mutation p.I145V 0.32 tolerated(0.09) benign(0.241) TCGA-EA-A410-01 1 11273547 11273547 C - MTOR Frame_Shift_Del p.G1065Vfs*10 0.20 TCGA-EA-A410-01 1 114137138 114137138 G A MAGI3 Missense_Mutation p.R325H 0.47 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 1 114225576 114225576 C T MAGI3 Missense_Mutation p.P1129L 0.39 deleterious(0.03) benign(0.011) TCGA-EA-A410-01 1 114242393 114242393 T - PHTF1 Frame_Shift_Del p.K692Sfs*10 0.22 TCGA-EA-A410-01 1 114304499 114304499 A - RSBN1 3'UTR 0.42 TCGA-EA-A410-01 1 114936607 114936609 AGG - TRIM33 3'UTR 0.37 TCGA-EA-A410-01 1 117146281 117146281 C T IGSF3 Missense_Mutation p.R550H 0.36 tolerated(0.12) benign(0.286) TCGA-EA-A410-01 1 11734862 11734862 G A MAD2L2 Silent p.Y202Y 0.36 TCGA-EA-A410-01 1 11807577 11807577 G A AGTRAP Missense_Mutation p.R48Q 0.40 deleterious(0.01) benign(0.23) TCGA-EA-A410-01 1 11854494 11854495 - C MTHFR Frame_Shift_Ins p.E423Gfs*6 0.28 TCGA-EA-A410-01 1 120165493 120165493 C T ZNF697 Silent p.K491K 0.07 TCGA-EA-A410-01 1 120165745 120165745 C T ZNF697 Silent p.K407K 0.50 TCGA-EA-A410-01 1 120301788 120301788 C T HMGCS2 Missense_Mutation p.R268Q 0.35 tolerated(0.42) benign(0.01) TCGA-EA-A410-01 1 120464968 120464968 G A NOTCH2 Nonsense_Mutation p.R1702* 0.23 TCGA-EA-A410-01 1 12908186 12908186 C T HNRNPCL1 5'UTR 0.12 TCGA-EA-A410-01 1 1326926 1326926 G A CCNL2 Intron 0.29 TCGA-EA-A410-01 1 145015902 145015902 T C RP11-326G21.1 5'Flank 0.11 TCGA-EA-A410-01 1 145021144 145021144 C A RP11-326G21.1 3'Flank 0.08 TCGA-EA-A410-01 1 145209244 145209244 C A RP11-458D21.5 5'UTR 0.18 TCGA-EA-A410-01 1 145457595 145457595 C T POLR3GL Missense_Mutation p.R112H 0.45 deleterious(0.02) possibly_damaging(0.832) TCGA-EA-A410-01 1 145528005 145528005 C G ITGA10 Missense_Mutation p.A81G 0.50 tolerated(0.47) benign(0.001) TCGA-EA-A410-01 1 145771706 145771706 G A GPR89A Nonsense_Mutation p.R312* 0.39 TCGA-EA-A410-01 1 147091501 147091501 C - BCL9 Frame_Shift_Del p.P516Lfs*5 0.36 TCGA-EA-A410-01 1 148932814 148932814 G A RP11-14N7.2 RNA 0.08 TCGA-EA-A410-01 1 149783495 149783496 CT - HIST2H2BF Intron 0.26 TCGA-EA-A410-01 1 149858874 149858874 T G HIST2H2AC Nonsense_Mutation p.L117* 0.41 TCGA-EA-A410-01 1 150255716 150255717 CT - C1orf51 Frame_Shift_Del p.S16Ffs*11 0.31 TCGA-EA-A410-01 1 150530506 150530506 G - ADAMTSL4 Frame_Shift_Del p.G757Vfs*62 0.32 TCGA-EA-A410-01 1 151252695 151252695 G A RP11-126K1.2 Missense_Mutation p.R53W 0.33 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-EA-A410-01 1 151260854 151260854 G A ZNF687 Missense_Mutation p.G696D 0.37 deleterious(0.04) possibly_damaging(0.468) TCGA-EA-A410-01 1 151282717 151282717 G A PI4KB Silent p.S320S 0.46 TCGA-EA-A410-01 1 151378242 151378242 G A POGZ Missense_Mutation p.A1090V 0.46 deleterious(0.04) probably_damaging(0.993) TCGA-EA-A410-01 1 151630874 151630874 G A SNX27 Missense_Mutation p.R236H 0.28 deleterious(0) probably_damaging(0.988) TCGA-EA-A410-01 1 151787887 151787887 G A RORC Missense_Mutation p.R105C 0.44 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 1 152079990 152079990 T C TCHH Missense_Mutation p.I1901M 0.33 possibly_damaging(0.507) TCGA-EA-A410-01 1 152277749 152277749 A G FLG Missense_Mutation p.S3205P 0.40 unknown(0) TCGA-EA-A410-01 1 152283678 152283678 G A FLG Silent p.D1228D 0.41 TCGA-EA-A410-01 1 152383309 152383309 C T CRNN Silent p.Q83Q 0.41 TCGA-EA-A410-01 1 153587748 153587748 C T S100A14 Missense_Mutation p.R47Q 0.58 tolerated(0.63) benign(0.002) TCGA-EA-A410-01 1 154935863 154935863 G - SHC1 3'UTR 0.36 TCGA-EA-A410-01 1 155002619 155002619 G A DCST2 Missense_Mutation p.A373V 0.35 tolerated(0.07) benign(0.026) TCGA-EA-A410-01 1 155005172 155005172 C T DCST2 Missense_Mutation p.R171Q 0.48 tolerated(0.1) benign(0.406) TCGA-EA-A410-01 1 155154488 155154488 C T TRIM46 Silent p.G583G 0.34 TCGA-EA-A410-01 1 155306142 155306142 G A ASH1L 3'UTR 0.30 TCGA-EA-A410-01 1 155306144 155306144 A G ASH1L 3'UTR 0.48 TCGA-EA-A410-01 1 155931509 155931509 G A ARHGEF2 Missense_Mutation p.R471C 0.19 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 1 156109151 156109151 C A LMNA 3'UTR 0.26 TCGA-EA-A410-01 1 156181080 156181080 G A SLC25A44 3'UTR 0.38 TCGA-EA-A410-01 1 156236036 156236036 T C SMG5 Missense_Mutation p.H464R 0.35 tolerated(0.46) benign(0.001) TCGA-EA-A410-01 1 15627806 15627806 G A FHAD1 5'Flank 0.32 TCGA-EA-A410-01 1 156642608 156642608 G A NES Nonsense_Mutation p.Q458* 0.41 TCGA-EA-A410-01 1 156845452 156845452 G A NTRK1 Missense_Mutation p.D499N 0.42 tolerated(0.14) benign(0.016) TCGA-EA-A410-01 1 15710336 15710336 G A FHAD1 Missense_Mutation p.A1386T 0.34 tolerated_low_confidence(0.4) benign(0.002) TCGA-EA-A410-01 1 158324214 158324214 T A CD1E Missense_Mutation p.S36T 0.36 tolerated(0.11) benign(0.008) TCGA-EA-A410-01 1 160105659 160105659 C A ATP1A2 Missense_Mutation p.S772Y 0.36 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 1 16053679 16053679 C - PLEKHM2 Frame_Shift_Del p.Q373Rfs*22 0.39 TCGA-EA-A410-01 1 16111282 16111282 C T FBLIM1 3'UTR 0.36 TCGA-EA-A410-01 1 161137901 161137901 G A PPOX Missense_Mutation p.R152H 0.44 deleterious(0) probably_damaging(0.996) TCGA-EA-A410-01 1 161163599 161163599 G A ADAMTS4 Silent p.G522G 0.42 TCGA-EA-A410-01 1 162337086 162337086 C T NOS1AP Silent p.G450G 0.42 TCGA-EA-A410-01 1 16356551 16356552 - G CLCNKA Frame_Shift_Ins p.Y466Vfs*25 0.12 TCGA-EA-A410-01 1 16458730 16458730 G A EPHA2 Silent p.G718G 0.42 TCGA-EA-A410-01 1 164776781 164776781 G A PBX1 Missense_Mutation p.R235Q 0.29 deleterious(0) benign(0.401) TCGA-EA-A410-01 1 166962051 166962051 G A MAEL Missense_Mutation p.A152T 0.41 deleterious(0.02) possibly_damaging(0.762) TCGA-EA-A410-01 1 167905939 167905941 AAG - DCAF6 5'Flank 0.49 TCGA-EA-A410-01 1 168054799 168054799 T C GPR161 Silent p.E540E 0.26 TCGA-EA-A410-01 1 168074022 168074022 C T GPR161 Missense_Mutation p.E43K 0.47 tolerated(0.8) benign(0.049) TCGA-EA-A410-01 1 16817531 16817531 C T CROCCP3 RNA 0.40 TCGA-EA-A410-01 1 169366580 169366580 T - CCDC181 Frame_Shift_Del p.K421Sfs*6 0.35 TCGA-EA-A410-01 1 169388283 169388283 G A CCDC181 Nonsense_Mutation p.R395* 0.37 TCGA-EA-A410-01 1 169433852 169433852 T C SLC19A2 3'UTR 0.42 TCGA-EA-A410-01 1 169822809 169822809 A - C1orf112 3'UTR 0.31 TCGA-EA-A410-01 1 17248507 17248507 C - CROCC 5'UTR 0.28 TCGA-EA-A410-01 1 172628541 172628541 C T FASLG Missense_Mutation p.P67L 0.35 tolerated(0.35) benign(0.011) TCGA-EA-A410-01 1 17314950 17314950 C T ATP13A2 Missense_Mutation p.G877R 0.38 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 1 174417646 174417646 G A GPR52 Missense_Mutation p.A133T 0.50 tolerated(0.09) benign(0.189) TCGA-EA-A410-01 1 176564350 176564350 G A PAPPA2 Missense_Mutation p.G537D 0.25 deleterious(0.01) probably_damaging(1) TCGA-EA-A410-01 1 177199089 177199089 G A BRINP2 Missense_Mutation p.G26D 0.06 tolerated_low_confidence(0.24) benign(0.107) TCGA-EA-A410-01 1 179063240 179063240 C T TOR3A Silent p.G277G 0.27 TCGA-EA-A410-01 1 181701998 181701998 G A CACNA1E Missense_Mutation p.V926I 0.36 tolerated(0.2) benign(0.103) TCGA-EA-A410-01 1 183521292 183521293 GA - SMG7 Intron 0.39 TCGA-EA-A410-01 1 183617782 183617782 G T APOBEC4 Silent p.L45L 0.10 TCGA-EA-A410-01 1 185069839 185069839 T - RNF2 3'UTR 0.29 TCGA-EA-A410-01 1 186313196 186313196 G A TPR Silent p.R1148R 0.24 TCGA-EA-A410-01 1 18692063 18692063 A G IGSF21 Missense_Mutation p.D296G 0.43 deleterious(0.02) possibly_damaging(0.746) TCGA-EA-A410-01 1 19181288 19181288 G A TAS1R2 Missense_Mutation p.R226C 0.32 deleterious(0.01) probably_damaging(0.97) TCGA-EA-A410-01 1 19208218 19208218 C T ALDH4A1 Missense_Mutation p.G281D 0.35 deleterious(0) probably_damaging(0.988) TCGA-EA-A410-01 1 193054347 193054347 A - TROVE2 3'UTR 0.35 TCGA-EA-A410-01 1 19412643 19412643 C A UBR4 Missense_Mutation p.A4937S 0.39 probably_damaging(0.983) TCGA-EA-A410-01 1 19440496 19440496 C T UBR4 Silent p.R3757R 0.37 TCGA-EA-A410-01 1 196309693 196309693 C T KCNT2 Missense_Mutation p.V521I 0.36 tolerated(0.08) benign(0.403) TCGA-EA-A410-01 1 196967351 196967351 T A CFHR5 Missense_Mutation p.I355K 0.33 tolerated(0.11) possibly_damaging(0.811) TCGA-EA-A410-01 1 197313486 197313487 - G CRB1 Frame_Shift_Ins p.A245Gfs*16 0.33 TCGA-EA-A410-01 1 20005599 20005599 G A HTR6 Missense_Mutation p.R354H 0.27 deleterious(0.05) possibly_damaging(0.77) TCGA-EA-A410-01 1 201822171 201822171 G T IPO9 Silent p.V212V 0.21 TCGA-EA-A410-01 1 201845173 201845173 C T IPO9 Silent p.I1039I 0.35 TCGA-EA-A410-01 1 202394810 202394810 G A PPP1R12B Missense_Mutation p.A220T 0.33 deleterious(0.04) probably_damaging(0.989) TCGA-EA-A410-01 1 202702802 202702802 G A KDM5B Silent p.G1212G 0.52 TCGA-EA-A410-01 1 203044778 203044778 G A PPFIA4 Missense_Mutation p.G650D 0.30 tolerated_low_confidence(0.16) benign(0.025) TCGA-EA-A410-01 1 203709074 203709074 G A ATP2B4 3'UTR 0.50 TCGA-EA-A410-01 1 203710948 203710948 A - ATP2B4 3'UTR 0.20 TCGA-EA-A410-01 1 203771754 203771754 T - ZC3H11A 5'UTR 0.62 TCGA-EA-A410-01 1 20395405 20395405 C T PLA2G5 5'Flank 0.31 TCGA-EA-A410-01 1 204125386 204125386 C T REN Missense_Mutation p.G294S 0.27 deleterious(0) probably_damaging(0.996) TCGA-EA-A410-01 1 204168324 204168324 G A GOLT1A Missense_Mutation p.A120V 0.26 tolerated(0.28) benign(0.004) TCGA-EA-A410-01 1 204188369 204188369 G A PLEKHA6 3'UTR 0.35 TCGA-EA-A410-01 1 204375080 204375080 A - PPP1R15B 3'UTR 0.29 TCGA-EA-A410-01 1 20465919 20465919 A G PLA2G2F 5'UTR 0.40 TCGA-EA-A410-01 1 205768187 205768187 C T SLC41A1 Missense_Mutation p.V199I 0.32 tolerated(0.49) possibly_damaging(0.906) TCGA-EA-A410-01 1 206821991 206821991 G - DYRK3 Frame_Shift_Del p.T485Qfs*3 0.25 TCGA-EA-A410-01 1 207112608 207112608 C T PIGR Missense_Mutation p.A82T 0.26 tolerated(0.07) probably_damaging(0.953) TCGA-EA-A410-01 1 208213029 208213029 G A PLXNA2 Silent p.G1479G 0.39 TCGA-EA-A410-01 1 210014267 210014267 C - DIEXF Frame_Shift_Del p.L453Wfs*3 0.31 TCGA-EA-A410-01 1 210334245 210334245 G A SYT14 Missense_Mutation p.R573H 0.47 deleterious(0) probably_damaging(0.996) TCGA-EA-A410-01 1 21133287 21133287 A - EIF4G3 3'UTR 0.73 TCGA-EA-A410-01 1 2113771 2113771 T C PRKCZ Intron 0.51 TCGA-EA-A410-01 1 211921199 211921199 A - LPGAT1 3'UTR 0.28 TCGA-EA-A410-01 1 212208686 212208686 C T INTS7 Missense_Mutation p.G32S 0.32 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 1 214542830 214542830 C T PTPN14 Missense_Mutation p.G1081S 0.38 deleterious(0.01) probably_damaging(1) TCGA-EA-A410-01 1 215408775 215408775 C T KCNK2 3'UTR 0.44 TCGA-EA-A410-01 1 216062273 216062273 C T USH2A Missense_Mutation p.R2573H 0.33 benign(0.003) TCGA-EA-A410-01 1 216678796 216678796 T - ESRRG 3'UTR 0.68 TCGA-EA-A410-01 1 22156248 22156249 - C HSPG2 Intron 0.38 TCGA-EA-A410-01 1 22165499 22165499 G A HSPG2 Silent p.H3323H 0.36 TCGA-EA-A410-01 1 22166444 22166444 C T HSPG2 Missense_Mutation p.A3194T 0.39 benign(0.148) TCGA-EA-A410-01 1 22200963 22200963 C T HSPG2 Missense_Mutation p.A1198T 0.43 possibly_damaging(0.753) TCGA-EA-A410-01 1 222905984 222905986 AGA - BROX In_Frame_Del p.E391del 0.37 TCGA-EA-A410-01 1 22332432 22332432 C T CELA3A Intron 0.29 TCGA-EA-A410-01 1 2238749 2238749 C T SKI 3'UTR 0.37 TCGA-EA-A410-01 1 22418440 22418441 - T CDC42 3'UTR 0.35 TCGA-EA-A410-01 1 225702424 225702424 A T ENAH Silent p.P364P 0.48 TCGA-EA-A410-01 1 226054853 226054853 C T TMEM63A Silent p.P175P 0.33 TCGA-EA-A410-01 1 228003456 228003456 C A PRSS38 Silent p.P13P 0.38 TCGA-EA-A410-01 1 228111879 228111879 C T WNT9A Missense_Mutation p.R192Q 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-EA-A410-01 1 228596935 228596935 G - TRIM17 Frame_Shift_Del p.P274Qfs*17 0.27 TCGA-EA-A410-01 1 229653804 229653804 A - ABCB10 3'UTR 0.27 TCGA-EA-A410-01 1 23107917 23107917 C T EPHB2 Missense_Mutation p.T22M 0.43 deleterious(0.03) benign(0.289) TCGA-EA-A410-01 1 232650009 232650009 A G SIPA1L2 Silent p.T359T 0.34 TCGA-EA-A410-01 1 233136131 233136131 G A PCNXL2 Missense_Mutation p.R1750W 0.52 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 1 233514890 233514890 C - MLK4 Frame_Shift_Del p.Q715Rfs*236 0.25 TCGA-EA-A410-01 1 233807668 233807668 A - KCNK1 3'UTR 0.76 TCGA-EA-A410-01 1 23414197 23414197 G A LUZP1 3'UTR 0.27 TCGA-EA-A410-01 1 23415258 23415258 G A LUZP1 3'UTR 0.39 TCGA-EA-A410-01 1 23418508 23418508 C T LUZP1 Silent p.A749A 0.32 TCGA-EA-A410-01 1 234569302 234569302 G A TARBP1 Missense_Mutation p.R750C 0.36 deleterious(0) probably_damaging(0.994) TCGA-EA-A410-01 1 235918879 235918879 A T LYST Missense_Mutation p.F2376L 0.45 tolerated(0.06) probably_damaging(0.977) TCGA-EA-A410-01 1 236205413 236205413 G A NID1 Missense_Mutation p.T311M 0.28 tolerated(0.08) benign(0.046) TCGA-EA-A410-01 1 236212172 236212172 C T NID1 Missense_Mutation p.D115N 0.35 tolerated(0.06) benign(0.052) TCGA-EA-A410-01 1 23637249 23637249 C - HNRNPR Frame_Shift_Del p.A537Hfs*36 0.26 TCGA-EA-A410-01 1 23713867 23713867 G A TCEA3 Nonsense_Mutation p.Q289* 0.33 TCGA-EA-A410-01 1 23763085 23763085 G A ASAP3 Silent p.H513H 0.35 TCGA-EA-A410-01 1 237955558 237955558 C T RYR2 Missense_Mutation p.R4573C 0.35 probably_damaging(0.985) TCGA-EA-A410-01 1 240370335 240370335 G A FMN2 Silent p.A741A 0.50 TCGA-EA-A410-01 1 240653789 240653789 A T GREM2 3'UTR 0.15 TCGA-EA-A410-01 1 24120717 24120717 G A LYPLA2 Missense_Mutation p.G125R 0.28 deleterious(0) benign(0.19) TCGA-EA-A410-01 1 241846852 241846852 C T WDR64 Missense_Mutation p.P220S 0.25 tolerated(0.72) benign(0.003) TCGA-EA-A410-01 1 242252912 242252912 G A PLD5 3'UTR 0.47 TCGA-EA-A410-01 1 243667383 243667383 T - AKT3 3'UTR 0.38 TCGA-EA-A410-01 1 244869298 244869298 T - DESI2 3'UTR 0.33 TCGA-EA-A410-01 1 24681621 24681622 TA - GRHL3 Intron 0.33 TCGA-EA-A410-01 1 247016544 247016544 G T AHCTF1 Missense_Mutation p.P1480H 0.34 deleterious_low_confidence(0.05) probably_damaging(0.957) TCGA-EA-A410-01 1 247737633 247737633 G A GCSAML Silent p.R119R 0.11 TCGA-EA-A410-01 1 25894375 25894375 G A LDLRAP1 3'UTR 0.40 TCGA-EA-A410-01 1 26515425 26515425 C T CNKSR1 Missense_Mutation p.A618V 0.52 tolerated(0.13) benign(0.007) TCGA-EA-A410-01 1 26753389 26753390 - T LIN28A 3'UTR 0.38 TCGA-EA-A410-01 1 27101066 27101066 G A ARID1A Missense_Mutation p.G1450S 0.43 unknown(0) TCGA-EA-A410-01 1 27190659 27190660 - C SFN 3'UTR 0.31 TCGA-EA-A410-01 1 27736556 27736556 C T WASF2 Silent p.P323P 0.38 TCGA-EA-A410-01 1 29650266 29650266 G A PTPRU Missense_Mutation p.E1370K 0.27 deleterious(0.02) benign(0.103) TCGA-EA-A410-01 1 31194386 31194386 C T MATN1 Missense_Mutation p.A103T 0.32 tolerated(0.14) benign(0.009) TCGA-EA-A410-01 1 31405681 31405681 T - PUM1 3'UTR 0.27 TCGA-EA-A410-01 1 31732485 31732485 A - SNRNP40 3'UTR 0.30 TCGA-EA-A410-01 1 32050855 32050855 C T TINAGL1 Missense_Mutation p.R321C 0.29 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 1 32509173 32509173 C T KHDRBS1 3'UTR 0.31 TCGA-EA-A410-01 1 32740628 32740628 C T LCK Silent p.P74P 0.44 TCGA-EA-A410-01 1 33360451 33360451 G A TMEM54 Silent p.G208G 0.27 TCGA-EA-A410-01 1 33613248 33613248 C T TRIM62 Missense_Mutation p.G320S 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-EA-A410-01 1 33778191 33778191 C T A3GALT2 Silent p.R36R 0.09 TCGA-EA-A410-01 1 33960712 33960712 G A ZSCAN20 Missense_Mutation p.R923H 0.12 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 1 34128652 34128652 C T CSMD2 Missense_Mutation p.V1325M 0.76 tolerated(0.07) possibly_damaging(0.843) TCGA-EA-A410-01 1 3418429 3418429 C - MEGF6 Frame_Shift_Del p.A749Pfs*223 0.29 TCGA-EA-A410-01 1 35250428 35250428 G A GJB3 Missense_Mutation p.R22H 0.35 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 1 35369999 35369999 C T DLGAP3 Missense_Mutation p.R329Q 0.35 deleterious(0) probably_damaging(0.968) TCGA-EA-A410-01 1 35442664 35442664 G A ZMYM6NB 3'Flank 0.20 TCGA-EA-A410-01 1 35908558 35908558 A - KIAA0319L Frame_Shift_Del p.W910Gfs*10 0.31 TCGA-EA-A410-01 1 36291316 36291316 G A AGO4 Silent p.P175P 0.36 TCGA-EA-A410-01 1 36321112 36321112 C T AGO4 3'UTR 0.41 TCGA-EA-A410-01 1 3649571 3649571 C T TP73 Silent p.G613G 0.23 TCGA-EA-A410-01 1 36935323 36935323 G - CSF3R Frame_Shift_Del p.S469Afs*22 0.32 TCGA-EA-A410-01 1 37270619 37270619 T C GRIK3 Missense_Mutation p.Y845C 0.45 deleterious(0) probably_damaging(0.95) TCGA-EA-A410-01 1 38275321 38275321 T - MTF1 3'UTR 0.35 TCGA-EA-A410-01 1 39900211 39900211 C - MACF1 Frame_Shift_Del p.W3837Gfs*8 0.32 TCGA-EA-A410-01 1 40235969 40235969 A G OXCT2 Missense_Mutation p.I320T 0.21 deleterious(0) possibly_damaging(0.857) TCGA-EA-A410-01 1 40319719 40319719 C T TRIT1 Missense_Mutation p.D113N 0.55 tolerated(0.84) benign(0.004) TCGA-EA-A410-01 1 40527440 40527440 C T CAP1 Nonsense_Mutation p.R84* 0.38 TCGA-EA-A410-01 1 41236182 41236182 C - NFYC Intron 0.24 TCGA-EA-A410-01 1 41304147 41304147 C T KCNQ4 Silent p.S680S 0.41 TCGA-EA-A410-01 1 41976777 41976777 C T HIVEP3 Missense_Mutation p.R2189H 0.40 probably_damaging(0.997) TCGA-EA-A410-01 1 42643692 42643692 A - FOXJ3 3'UTR 0.50 TCGA-EA-A410-01 1 43850142 43850143 - T MED8 Frame_Shift_Ins p.N295Kfs*19 0.41 TCGA-EA-A410-01 1 43892785 43892785 G A SZT2 Missense_Mutation p.R1066H 0.31 deleterious(0.02) benign(0.002) TCGA-EA-A410-01 1 44463008 44463008 C - SLC6A9 3'Flank 0.34 TCGA-EA-A410-01 1 45120074 45120074 C T TMEM53 3'UTR 0.50 TCGA-EA-A410-01 1 45484674 45484674 C T ZSWIM5 Missense_Mutation p.A1004T 0.46 deleterious(0) unknown(0) TCGA-EA-A410-01 1 50956315 50956316 - TC FAF1 Frame_Shift_Ins p.M533Rfs*26 0.25 TCGA-EA-A410-01 1 52253843 52253843 C T OSBPL9 3'UTR 0.36 TCGA-EA-A410-01 1 52859268 52859268 G T ORC1 Missense_Mutation p.A310D 0.45 tolerated(0.66) benign(0.002) TCGA-EA-A410-01 1 53074141 53074141 T C GPX7 3'UTR 0.29 TCGA-EA-A410-01 1 54433490 54433492 AAG - LRRC42 In_Frame_Del p.K390del 0.56 TCGA-EA-A410-01 1 54513076 54513076 A - TMEM59 Intron 0.33 TCGA-EA-A410-01 1 55151980 55151980 G A MROH7 Missense_Mutation p.R857H 0.31 tolerated(0.26) benign(0.016) TCGA-EA-A410-01 1 55560950 55560950 G A USP24 Nonsense_Mutation p.Q2061* 0.38 TCGA-EA-A410-01 1 56961139 56961139 C A PPAP2B 3'UTR 0.45 TCGA-EA-A410-01 1 6185607 6185607 C T CHD5 Missense_Mutation p.A1413T 0.53 deleterious(0) probably_damaging(0.99) TCGA-EA-A410-01 1 61921198 61921198 T A NFIA 3'UTR 0.26 TCGA-EA-A410-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.29 TCGA-EA-A410-01 1 6324741 6324741 G A ACOT7 Silent p.D353D 0.28 TCGA-EA-A410-01 1 63790507 63790507 A - FOXD3 3'UTR 0.31 TCGA-EA-A410-01 1 65243477 65243477 G A RAVER2 Missense_Mutation p.R163H 0.30 deleterious(0) probably_damaging(0.96) TCGA-EA-A410-01 1 6534106 6534106 G A PLEKHG5 Silent p.D265D 0.47 TCGA-EA-A410-01 1 6534531 6534531 C - PLEKHG5 Frame_Shift_Del p.G219Dfs*22 0.31 TCGA-EA-A410-01 1 67210667 67210667 A G SGIP1 3'UTR 0.35 TCGA-EA-A410-01 1 67896022 67896022 C T SERBP1 5'UTR 0.48 TCGA-EA-A410-01 1 70385560 70385560 G A LRRC7 Intron 0.39 TCGA-EA-A410-01 1 77555482 77555482 G A PIGK 3'UTR 0.37 TCGA-EA-A410-01 1 78267055 78267055 A T FAM73A Missense_Mutation p.T79S 0.40 tolerated(0.06) benign(0.061) TCGA-EA-A410-01 1 8390865 8390865 G A SLC45A1 Missense_Mutation p.G438S 0.14 tolerated(0.07) benign(0.098) TCGA-EA-A410-01 1 83912273 83912273 A - RP11-413G15.1 RNA 0.40 TCGA-EA-A410-01 1 8425976 8425976 C T RERE Missense_Mutation p.R448Q 0.39 probably_damaging(0.96) TCGA-EA-A410-01 1 84356122 84356122 G A TTLL7 Missense_Mutation p.R751C 0.32 deleterious(0) probably_damaging(0.932) TCGA-EA-A410-01 1 89615148 89615148 C T GBP7 Missense_Mutation p.V327M 0.09 tolerated(0.09) possibly_damaging(0.575) TCGA-EA-A410-01 1 897019 897019 C T KLHL17 Silent p.S126S 0.50 TCGA-EA-A410-01 1 93303111 93303111 G A RPL5 Missense_Mutation p.R209H 0.30 tolerated(0.31) benign(0) TCGA-EA-A410-01 1 93575796 93575796 A G MTF2 Silent p.T5T 0.25 TCGA-EA-A410-01 1 9804589 9804589 G A CLSTN1 Silent p.N366N 0.29 TCGA-EA-A410-01 1 990320 990320 G A AGRN Missense_Mutation p.A2033T 0.26 deleterious(0) probably_damaging(0.993) TCGA-EA-A410-01 20 13071817 13071817 G A SPTLC3 Missense_Mutation p.A232T 0.46 deleterious(0) probably_damaging(0.99) TCGA-EA-A410-01 20 13894429 13894429 T - SEL1L2 Frame_Shift_Del p.N183Tfs*3 0.32 TCGA-EA-A410-01 20 16253389 16253389 A G KIF16B 3'UTR 0.33 TCGA-EA-A410-01 20 21492732 21492732 C T NKX2-2 Silent p.A217A 0.49 TCGA-EA-A410-01 20 23016417 23016417 C T SSTR4 Silent p.S99S 0.35 TCGA-EA-A410-01 20 23016723 23016723 G A SSTR4 Silent p.Q201Q 0.41 TCGA-EA-A410-01 20 23345818 23345818 G A GZF1 Silent p.P266P 0.60 TCGA-EA-A410-01 20 23351801 23351801 A - GZF1 3'UTR 0.32 TCGA-EA-A410-01 20 23967095 23967095 C T GGTLC1 Missense_Mutation p.A52T 0.27 deleterious(0.03) possibly_damaging(0.611) TCGA-EA-A410-01 20 2776746 2776746 T C CPXM1 Missense_Mutation p.H435R 0.30 tolerated(0.67) benign(0.241) TCGA-EA-A410-01 20 2843957 2843957 C - VPS16 Frame_Shift_Del p.L465Wfs*89 0.33 TCGA-EA-A410-01 20 30126029 30126029 C T HM13 Silent p.F110F 0.34 TCGA-EA-A410-01 20 30436218 30436218 A G FOXS1 5'Flank 0.47 TCGA-EA-A410-01 20 30467668 30467668 C - TTLL9 Intron 0.29 TCGA-EA-A410-01 20 30619001 30619001 C T CCM2L 3'UTR 0.47 TCGA-EA-A410-01 20 30729358 30729358 C T TM9SF4 Silent p.S96S 0.32 TCGA-EA-A410-01 20 31019451 31019451 G A ASXL1 Silent p.A316A 0.41 TCGA-EA-A410-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.28 TCGA-EA-A410-01 20 31661400 31661400 G A BPIFB3 Missense_Mutation p.V474M 0.39 deleterious(0.03) probably_damaging(0.953) TCGA-EA-A410-01 20 31984665 31984665 A T CDK5RAP1 Nonsense_Mutation p.L69* 0.45 TCGA-EA-A410-01 20 33000325 33000325 G A ITCH Missense_Mutation p.V73I 0.32 tolerated(0.08) probably_damaging(0.998) TCGA-EA-A410-01 20 33588263 33588263 C T MYH7B Missense_Mutation p.T1692M 0.27 benign(0.008) TCGA-EA-A410-01 20 34238755 34238755 G A RBM12 3'UTR 0.35 TCGA-EA-A410-01 20 34430525 34430525 C T PHF20 Silent p.Y38Y 0.34 TCGA-EA-A410-01 20 34502067 34502067 G A PHF20 Silent p.P591P 0.38 TCGA-EA-A410-01 20 34820539 34820539 T - EPB41L1 3'UTR 0.29 TCGA-EA-A410-01 20 3675417 3675417 C T SIGLEC1 Missense_Mutation p.R946H 0.37 tolerated(0.51) benign(0.021) TCGA-EA-A410-01 20 3804636 3804636 C T AP5S1 Missense_Mutation p.R99C 0.46 deleterious(0.04) benign(0.01) TCGA-EA-A410-01 20 3835277 3835277 G A MAVS Silent p.P2P 0.40 TCGA-EA-A410-01 20 39794368 39794368 C T PLCG1 Silent p.R567R 0.32 TCGA-EA-A410-01 20 42908148 42908149 AG - GDAP1L1 3'UTR 0.39 TCGA-EA-A410-01 20 43118159 43118159 T C TTPAL Missense_Mutation p.S336P 0.45 tolerated_low_confidence(0.19) benign(0.004) TCGA-EA-A410-01 20 43383754 43383754 T - RIMS4 3'Flank 0.20 TCGA-EA-A410-01 20 44486317 44486317 T C ZSWIM3 5'UTR 0.21 TCGA-EA-A410-01 20 44575959 44575959 C T PCIF1 Missense_Mutation p.R589W 0.35 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 20 44987294 44987294 C T SLC35C2 5'UTR 0.33 TCGA-EA-A410-01 20 45867410 45867411 AA - ZMYND8 Intron 0.45 TCGA-EA-A410-01 20 46268749 46268749 G A NCOA3 Missense_Mutation p.D1012N 0.51 deleterious(0.03) possibly_damaging(0.586) TCGA-EA-A410-01 20 46305847 46305847 G A SULF2 Missense_Mutation p.R409W 0.29 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 20 4708440 4708440 T - PRND 3'UTR 0.45 TCGA-EA-A410-01 20 47632872 47632872 T - ARFGEF2 Frame_Shift_Del p.F1413Lfs*8 0.30 TCGA-EA-A410-01 20 47691381 47691381 G T CSE1L Nonsense_Mutation p.G376* 0.49 TCGA-EA-A410-01 20 47887243 47887246 AGAT - ZNFX1 Frame_Shift_Del p.Y368Wfs*32 0.39 TCGA-EA-A410-01 20 49225067 49225067 G A FAM65C Missense_Mutation p.T268M 0.17 tolerated(0.18) benign(0.115) TCGA-EA-A410-01 20 49369613 49369613 T - PARD6B 3'UTR 0.31 TCGA-EA-A410-01 20 49621098 49621098 C T KCNG1 Silent p.L340L 0.36 TCGA-EA-A410-01 20 49626177 49626177 C T KCNG1 Silent p.S233S 0.32 TCGA-EA-A410-01 20 49626456 49626456 G A KCNG1 Silent p.R140R 0.38 TCGA-EA-A410-01 20 52184372 52184373 AA - ZNF217 3'UTR 0.32 TCGA-EA-A410-01 20 52184382 52184384 AAT - ZNF217 3'UTR 0.25 TCGA-EA-A410-01 20 54824428 54824428 G A MC3R Missense_Mutation p.V177M 0.42 deleterious(0.02) probably_damaging(0.967) TCGA-EA-A410-01 20 56094300 56094300 C T CTCFL Silent p.T296T 0.33 TCGA-EA-A410-01 20 57088991 57088991 T C APCDD1L Intron 0.54 TCGA-EA-A410-01 20 57568592 57568592 T C NELFCD Missense_Mutation p.M496T 0.24 deleterious(0) possibly_damaging(0.529) TCGA-EA-A410-01 20 57569839 57569839 C T NELFCD 3'UTR 0.50 TCGA-EA-A410-01 20 58422265 58422265 C T PHACTR3 3'UTR 0.24 TCGA-EA-A410-01 20 58520521 58520521 G A FAM217B 3'UTR 0.38 TCGA-EA-A410-01 20 6056937 6056937 C A FERMT1 3'UTR 0.38 TCGA-EA-A410-01 20 60708354 60708354 G A LSM14B Missense_Mutation p.R332Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 20 60739274 60739274 G A SS18L1 Silent p.E265E 0.35 TCGA-EA-A410-01 20 60926821 60926821 G A LAMA5 Missense_Mutation p.R299C 0.47 probably_damaging(0.984) TCGA-EA-A410-01 20 61341103 61341103 C T NTSR1 Nonsense_Mutation p.R182* 0.40 TCGA-EA-A410-01 20 61538605 61538605 G A DIDO1 Missense_Mutation p.A423V 0.43 possibly_damaging(0.706) TCGA-EA-A410-01 20 62055548 62055548 G - KCNQ2 Frame_Shift_Del p.P410Rfs*30 0.36 TCGA-EA-A410-01 20 62124600 62124600 C T EEF1A2 Missense_Mutation p.G221D 0.30 deleterious_low_confidence(0.02) benign(0.17) TCGA-EA-A410-01 20 62172194 62172194 C T SRMS Missense_Mutation p.A482T 0.43 tolerated(0.62) benign(0.006) TCGA-EA-A410-01 20 62195719 62195719 C T HELZ2 Missense_Mutation p.V1486I 0.44 tolerated(0.4) benign(0.208) TCGA-EA-A410-01 20 62196914 62196914 C T HELZ2 Silent p.V1087V 0.47 TCGA-EA-A410-01 20 62221266 62221266 C T GMEB2 3'UTR 0.38 TCGA-EA-A410-01 20 62275582 62275582 C T STMN3 Missense_Mutation p.V34I 0.39 tolerated(1) benign(0) TCGA-EA-A410-01 20 62384185 62384185 A G ZBTB46 Missense_Mutation p.F418L 0.43 tolerated(1) benign(0.111) TCGA-EA-A410-01 20 62730084 62730084 G A OPRL1 Missense_Mutation p.V349M 0.41 tolerated(0.41) benign(0.029) TCGA-EA-A410-01 21 16333757 16333757 A G NRIP1 3'UTR 0.34 TCGA-EA-A410-01 21 30714759 30714760 - T BACH1 Frame_Shift_Ins p.L607Ffs*6 0.31 TCGA-EA-A410-01 21 30716660 30716660 C T BACH1 3'UTR 0.32 TCGA-EA-A410-01 21 31769000 31769000 G A KRTAP13-1 3'UTR 0.42 TCGA-EA-A410-01 21 32492758 32492758 G A TIAM1 Silent p.S1568S 0.28 TCGA-EA-A410-01 21 33044483 33044483 C T SCAF4 Silent p.P891P 0.39 TCGA-EA-A410-01 21 33679034 33679034 G A MRAP Missense_Mutation p.A64T 0.41 deleterious(0) benign(0.003) TCGA-EA-A410-01 21 37660427 37660427 G A DOPEY2 Nonsense_Mutation p.W2092* 0.06 TCGA-EA-A410-01 21 37747762 37747762 C T MORC3 3'UTR 0.27 TCGA-EA-A410-01 21 38308998 38308998 G T HLCS Silent p.S249S 0.31 TCGA-EA-A410-01 21 38507682 38507682 T G TTC3 Missense_Mutation p.D482E 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-EA-A410-01 21 38568168 38568168 C T TTC3 Silent p.L1804L 0.39 TCGA-EA-A410-01 21 38858865 38858865 C T DYRK1A Nonsense_Mutation p.R205* 0.24 TCGA-EA-A410-01 21 39755663 39755663 C T ERG Missense_Mutation p.A375T 0.31 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 21 40568732 40568732 T C BRWD1 Missense_Mutation p.E2088G 0.51 deleterious_low_confidence(0.05) benign(0.172) TCGA-EA-A410-01 21 42823102 42823102 C T MX1 Missense_Mutation p.R481W 0.16 tolerated(0.12) benign(0.081) TCGA-EA-A410-01 21 43242307 43242307 G A PRDM15 Silent p.D982D 0.48 TCGA-EA-A410-01 21 43254644 43254645 - C PRDM15 Intron 0.53 TCGA-EA-A410-01 21 43258107 43258107 G A PRDM15 Missense_Mutation p.R679W 0.36 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-EA-A410-01 21 43411022 43411022 G A ZBTB21 Silent p.H1061H 0.39 TCGA-EA-A410-01 21 44108091 44108091 G A PDE9A Missense_Mutation p.A69T 0.40 tolerated(0.32) benign(0.019) TCGA-EA-A410-01 21 44835170 44835170 G A SIK1 3'UTR 0.34 TCGA-EA-A410-01 21 45534064 45534064 C T PWP2 Silent p.G77G 0.24 TCGA-EA-A410-01 21 45877287 45877287 G A LRRC3 Missense_Mutation p.G254S 0.37 tolerated_low_confidence(1) benign(0.007) TCGA-EA-A410-01 21 45987772 45987773 - G TSPEAR Frame_Shift_Ins p.R67Pfs*15 0.30 TCGA-EA-A410-01 21 46191356 46191356 C T UBE2G2 Missense_Mutation p.R145H 0.41 deleterious(0) probably_damaging(0.957) TCGA-EA-A410-01 21 46689842 46689842 A G POFUT2 Silent p.S308S 0.41 TCGA-EA-A410-01 21 46842416 46842416 C T COL18A1-AS1 RNA 0.47 TCGA-EA-A410-01 21 46842526 46842526 C - COL18A1-AS1 RNA 0.27 TCGA-EA-A410-01 21 47552256 47552256 C T COL6A2 Silent p.G950G 0.16 TCGA-EA-A410-01 21 47574074 47574074 C T FTCD Missense_Mutation p.S76N 0.34 tolerated(0.17) benign(0.068) TCGA-EA-A410-01 21 47664940 47664940 C T MCM3AP Missense_Mutation p.A1607T 0.33 tolerated(0.22) benign(0.008) TCGA-EA-A410-01 21 47703581 47703581 C T MCM3AP Missense_Mutation p.R464H 0.40 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 21 47819665 47819665 G A PCNT Silent p.Q1582Q 0.31 TCGA-EA-A410-01 21 47851552 47851552 A G PCNT Missense_Mutation p.E2725G 0.15 possibly_damaging(0.727) TCGA-EA-A410-01 21 48083366 48083366 C T PRMT2 Missense_Mutation p.T390M 0.41 deleterious(0.02) probably_damaging(0.976) TCGA-EA-A410-01 22 16278082 16278082 A C POTEH Intron 0.31 TCGA-EA-A410-01 22 17589513 17589513 C A IL17RA Silent p.R468R 0.18 TCGA-EA-A410-01 22 17589514 17589514 T C IL17RA Missense_Mutation p.C469R 0.21 tolerated(0.22) probably_damaging(0.984) TCGA-EA-A410-01 22 18841191 18841191 C T AC008132.13 3'Flank 0.10 TCGA-EA-A410-01 22 18844915 18844915 G A BCRP7 RNA 0.17 TCGA-EA-A410-01 22 19119622 19119622 G A TSSK2 Missense_Mutation p.R237H 0.43 deleterious(0.04) benign(0.008) TCGA-EA-A410-01 22 19967388 19967388 C T ARVCF Missense_Mutation p.R425H 0.11 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 22 20128231 20128231 G A ZDHHC8 Missense_Mutation p.R251Q 0.43 deleterious(0) probably_damaging(0.996) TCGA-EA-A410-01 22 20342086 20342086 G A XXbac-B33L19.6 5'Flank 0.12 TCGA-EA-A410-01 22 21065052 21065053 - C PI4KA Frame_Shift_Ins p.K2007Qfs*56 0.21 TCGA-EA-A410-01 22 21306788 21306788 T - CRKL 3'UTR 0.25 TCGA-EA-A410-01 22 22556263 22556263 C T IGLV11-55 Missense_Mutation p.P26L 0.62 tolerated(0.08) benign(0.159) TCGA-EA-A410-01 22 22599813 22599813 G A VPREB1 3'UTR 0.21 TCGA-EA-A410-01 22 23742495 23742495 G - ZDHHC8P1 RNA 0.39 TCGA-EA-A410-01 22 23744281 23744282 - G ZDHHC8P1 Intron 0.33 TCGA-EA-A410-01 22 24583366 24583366 C T SUSD2 Silent p.R613R 0.42 TCGA-EA-A410-01 22 24827195 24827195 G A ADORA2A Intron 0.33 TCGA-EA-A410-01 22 25756047 25756047 C T LRP5L Missense_Mutation p.V5I 0.47 tolerated(0.99) benign(0.013) TCGA-EA-A410-01 22 28315190 28315190 C - PITPNB 5'UTR 0.41 TCGA-EA-A410-01 22 29752432 29752432 G A AP1B1 Silent p.D233D 0.34 TCGA-EA-A410-01 22 30638515 30638515 G - LIF 3'UTR 0.32 TCGA-EA-A410-01 22 30782631 30782631 C T RNF215 Missense_Mutation p.A135T 0.38 tolerated(0.22) benign(0.01) TCGA-EA-A410-01 22 31530051 31530051 G A INPP5J Silent p.P521P 0.27 TCGA-EA-A410-01 22 31741056 31741056 G - PATZ1 Frame_Shift_Del p.P178Lfs*12 0.18 TCGA-EA-A410-01 22 31924802 31924802 C T SFI1 Silent p.G73G 0.07 TCGA-EA-A410-01 22 32108913 32108913 G A PRR14L Nonsense_Mutation p.R1638* 0.49 TCGA-EA-A410-01 22 32647856 32647856 G A SLC5A4 Silent p.G71G 0.46 TCGA-EA-A410-01 22 33256520 33256520 T - TIMP3 3'UTR 0.29 TCGA-EA-A410-01 22 36900185 36900185 G A FOXRED2 Missense_Mutation p.R337C 0.39 deleterious(0) probably_damaging(0.991) TCGA-EA-A410-01 22 36960638 36960638 C T CACNG2 Silent p.T244T 0.37 TCGA-EA-A410-01 22 37480290 37480290 G - TMPRSS6 Intron 0.41 TCGA-EA-A410-01 22 37767066 37767066 C T ELFN2 3'UTR 0.29 TCGA-EA-A410-01 22 37769104 37769104 G - ELFN2 3'UTR 0.35 TCGA-EA-A410-01 22 37770940 37770940 C T ELFN2 Missense_Mutation p.R212H 0.33 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 22 37900230 37900230 G A CARD10 Missense_Mutation p.R533C 0.28 deleterious(0) probably_damaging(0.939) TCGA-EA-A410-01 22 38038924 38038924 G A SH3BP1 Missense_Mutation p.A103T 0.41 tolerated(0.46) benign(0.403) TCGA-EA-A410-01 22 38122000 38122000 G A TRIOBP Missense_Mutation p.S1146N 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EA-A410-01 22 39082326 39082326 C T JOSD1 3'UTR 0.43 TCGA-EA-A410-01 22 39123337 39123337 G A GTPBP1 Silent p.P507P 0.52 TCGA-EA-A410-01 22 39222573 39222573 C T NPTXR Missense_Mutation p.G344R 0.30 deleterious(0) possibly_damaging(0.781) TCGA-EA-A410-01 22 39378415 39378415 A - APOBEC3B 5'UTR 0.27 TCGA-EA-A410-01 22 39411742 39411742 G A APOBEC3C Missense_Mutation p.V54I 0.28 tolerated(0.45) probably_damaging(0.99) TCGA-EA-A410-01 22 39482467 39482467 C A APOBEC3G Missense_Mutation p.L307M 0.29 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 22 39619710 39619711 TT - PDGFB 3'UTR 0.35 TCGA-EA-A410-01 22 39640386 39640386 G A PDGFB 5'UTR 0.56 TCGA-EA-A410-01 22 39817886 39817886 G A TAB1 Silent p.P277P 0.42 TCGA-EA-A410-01 22 39887278 39887278 C T MGAT3 3'UTR 0.31 TCGA-EA-A410-01 22 40015370 40015370 G A CACNA1I Missense_Mutation p.V180M 0.68 deleterious(0.02) probably_damaging(0.933) TCGA-EA-A410-01 22 40074056 40074056 G A CACNA1I Missense_Mutation p.M1666I 0.33 deleterious(0.03) benign(0.072) TCGA-EA-A410-01 22 40415179 40415179 C A FAM83F Missense_Mutation p.A166D 0.32 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 22 40417817 40417817 G A FAM83F Missense_Mutation p.A435T 0.35 tolerated_low_confidence(0.07) benign(0.027) TCGA-EA-A410-01 22 41736061 41736061 C T ZC3H7B Missense_Mutation p.P353L 0.33 tolerated(0.13) possibly_damaging(0.664) TCGA-EA-A410-01 22 42042909 42042910 - AA XRCC6 Frame_Shift_Ins p.L263Sfs*6 0.29 TCGA-EA-A410-01 22 42538628 42538628 C T NDUFA6-AS1 3'Flank 0.23 TCGA-EA-A410-01 22 43459836 43459836 C T TTLL1 Missense_Mutation p.A244T 0.10 deleterious(0) possibly_damaging(0.858) TCGA-EA-A410-01 22 44333090 44333090 G A PNPLA3 Missense_Mutation p.R306H 0.41 tolerated(0.12) benign(0.086) TCGA-EA-A410-01 22 45579332 45579332 G T NUP50 Missense_Mutation p.G379C 0.32 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 22 45593015 45593015 G T KIAA0930 3'UTR 0.22 TCGA-EA-A410-01 22 45728518 45728518 C T FAM118A Silent p.Y288Y 0.32 TCGA-EA-A410-01 22 46656375 46656375 C T PKDREJ Missense_Mutation p.V949I 0.33 tolerated(0.27) benign(0.015) TCGA-EA-A410-01 22 46859662 46859662 G A CELSR1 Silent p.N1375N 0.46 TCGA-EA-A410-01 22 50170800 50170800 C T BRD1 Silent p.A870A 0.33 TCGA-EA-A410-01 22 50615386 50615386 A G PANX2 Missense_Mutation p.Y82C 0.30 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 22 50720141 50720141 G A PLXNB2 Nonsense_Mutation p.Q1126* 0.42 TCGA-EA-A410-01 22 50724236 50724236 G A PLXNB2 Missense_Mutation p.T694I 0.17 tolerated(0.42) benign(0.051) TCGA-EA-A410-01 22 50750816 50750816 C T DENND6B Missense_Mutation p.E531K 0.33 deleterious(0) possibly_damaging(0.877) TCGA-EA-A410-01 22 50885177 50885177 C T SBF1 3'UTR 0.44 TCGA-EA-A410-01 22 50956409 50956411 TCA - NCAPH2 In_Frame_Del p.I145del 0.35 TCGA-EA-A410-01 22 51012989 51012989 C T CPT1B Missense_Mutation p.R273H 0.31 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 22 51041762 51041762 C T MAPK8IP2 Silent p.D94D 0.38 TCGA-EA-A410-01 22 51160646 51160646 G A SHANK3 Missense_Mutation p.R1478H 0.35 possibly_damaging(0.902) TCGA-EA-A410-01 2 103335517 103335517 T A MFSD9 Missense_Mutation p.T263S 0.32 tolerated(0.45) benign(0.004) TCGA-EA-A410-01 2 108609516 108609516 C T SLC5A7 Silent p.G127G 0.38 TCGA-EA-A410-01 2 108917338 108917338 A T SULT1C2 Intron 0.09 TCGA-EA-A410-01 2 109382736 109382736 A G RANBP2 Missense_Mutation p.K1914R 0.40 tolerated(0.05) benign(0.028) TCGA-EA-A410-01 2 109398601 109398603 AGA - RANBP2 In_Frame_Del p.E2928del 0.50 TCGA-EA-A410-01 2 109400822 109400822 C T RANBP2 3'UTR 0.27 TCGA-EA-A410-01 2 110053508 110053508 C T SH3RF3 Silent p.H578H 0.50 TCGA-EA-A410-01 2 110373438 110373438 C T SOWAHC Missense_Mutation p.R458C 0.23 deleterious(0) probably_damaging(0.98) TCGA-EA-A410-01 2 111875274 111875274 G A ACOXL Missense_Mutation p.A542T 0.40 deleterious(0.03) possibly_damaging(0.68) TCGA-EA-A410-01 2 113514098 113514098 G A CKAP2L Missense_Mutation p.R284W 0.31 tolerated(0.09) benign(0.03) TCGA-EA-A410-01 2 114036458 114036458 C - PAX8 5'UTR 0.38 TCGA-EA-A410-01 2 114475412 114475412 G A SLC35F5 Silent p.S504S 0.42 TCGA-EA-A410-01 2 11751004 11751004 C T GREB1 Missense_Mutation p.R953W 0.38 deleterious(0) probably_damaging(0.996) TCGA-EA-A410-01 2 11944644 11944644 G A LPIN1 Silent p.L752L 0.07 TCGA-EA-A410-01 2 120021081 120021082 AC - STEAP3 3'UTR 0.23 TCGA-EA-A410-01 2 120932583 120932583 A - EPB41L5 3'UTR 0.30 TCGA-EA-A410-01 2 121038442 121038442 A - RALB Intron 0.29 TCGA-EA-A410-01 2 121052255 121052255 T - RALB 3'UTR 0.26 TCGA-EA-A410-01 2 121743938 121743938 G A GLI2 Missense_Mutation p.V681M 0.42 deleterious(0.04) benign(0.118) TCGA-EA-A410-01 2 128331589 128331589 C T MYO7B Silent p.G229G 0.45 TCGA-EA-A410-01 2 128412061 128412061 C T LIMS2 Missense_Mutation p.C123Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 2 130899903 130899903 C T CCDC74B Missense_Mutation p.R116H 0.13 tolerated(0.11) benign(0.36) TCGA-EA-A410-01 2 130899950 130899950 G A CCDC74B Silent p.G100G 0.32 TCGA-EA-A410-01 2 130951498 130951498 T G TUBA3E Missense_Mutation p.D306A 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-EA-A410-01 2 131520225 131520225 G - AMER3 Frame_Shift_Del p.R196Gfs*70 0.39 TCGA-EA-A410-01 2 132288203 132288203 G A CCDC74A Missense_Mutation p.R116H 0.20 tolerated(0.1) possibly_damaging(0.647) TCGA-EA-A410-01 2 136026536 136026536 C T ZRANB3 Missense_Mutation p.R461H 0.33 deleterious(0.01) benign(0.232) TCGA-EA-A410-01 2 138738891 138738891 G A HNMT Intron 0.49 TCGA-EA-A410-01 2 1497571 1497571 C T TPO Intron 0.32 TCGA-EA-A410-01 2 152112048 152112048 T - RBM43 Frame_Shift_Del p.V72Lfs*13 0.33 TCGA-EA-A410-01 2 152324560 152324560 C G RIF1 Missense_Mutation p.A2216G 0.25 deleterious(0) probably_damaging(0.992) TCGA-EA-A410-01 2 152350704 152350705 CT - NEB Frame_Shift_Del p.R8183Sfs*9 0.30 TCGA-EA-A410-01 2 15732065 15732065 C T DDX1 Missense_Mutation p.A3V 0.30 deleterious(0) benign(0.367) TCGA-EA-A410-01 2 158177605 158177605 G A ERMN 3'UTR 0.39 TCGA-EA-A410-01 2 159526285 159526285 A C PKP4 Missense_Mutation p.S928R 0.38 tolerated(0.16) benign(0.197) TCGA-EA-A410-01 2 160176646 160176646 T - BAZ2B 3'UTR 0.25 TCGA-EA-A410-01 2 160660975 160660975 C T LY75 Intron 0.30 TCGA-EA-A410-01 2 161349969 161349969 A G RBMS1 5'UTR 0.48 TCGA-EA-A410-01 2 162849046 162849046 T - DPP4 3'UTR 0.28 TCGA-EA-A410-01 2 1643178 1643178 C - PXDN Frame_Shift_Del p.Q1324Sfs*80 0.32 TCGA-EA-A410-01 2 164468177 164468177 C T FIGN Silent p.A55A 0.30 TCGA-EA-A410-01 2 165947024 165947024 G A SCN3A Missense_Mutation p.A1880V 0.26 deleterious(0) possibly_damaging(0.734) TCGA-EA-A410-01 2 167333990 167333990 A - SCN7A Frame_Shift_Del p.Y73Tfs*9 0.17 TCGA-EA-A410-01 2 168100493 168100493 G A XIRP2 Missense_Mutation p.R864H 0.50 benign(0.001) TCGA-EA-A410-01 2 168108339 168108339 T - XIRP2 Frame_Shift_Del p.Q3481Kfs*26 0.46 TCGA-EA-A410-01 2 170938525 170938525 T - UBR3 3'UTR 0.47 TCGA-EA-A410-01 2 171939347 171939347 C T TLK1 Missense_Mutation p.E92K 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-EA-A410-01 2 175424624 175424624 A - WIPF1 3'UTR 0.31 TCGA-EA-A410-01 2 175612764 175612764 G A CHRNA1 3'UTR 0.30 TCGA-EA-A410-01 2 178994206 178994207 TT - RBM45 3'UTR 0.35 TCGA-EA-A410-01 2 179396694 179396694 C T TTN Missense_Mutation p.R34883H 0.42 TCGA-EA-A410-01 2 179454576 179454576 G A TTN Nonsense_Mutation p.R20626* 0.40 TCGA-EA-A410-01 2 179486663 179486663 G A TTN Missense_Mutation p.R14996C 0.36 TCGA-EA-A410-01 2 17997931 17997931 C T MSGN1 Missense_Mutation p.P49L 0.45 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 2 182412563 182412563 C T CERKL Missense_Mutation p.G408E 0.43 tolerated(0.32) benign(0.003) TCGA-EA-A410-01 2 183129100 183129100 T C PDE1A Missense_Mutation p.N48S 0.09 tolerated(1) possibly_damaging(0.672) TCGA-EA-A410-01 2 183995196 183995196 G A NUP35 Missense_Mutation p.A88T 0.47 deleterious(0) possibly_damaging(0.64) TCGA-EA-A410-01 2 186659847 186659847 G A FSIP2 Missense_Mutation p.A2751T 0.33 benign(0.005) TCGA-EA-A410-01 2 187627619 187627619 C T FAM171B 3'UTR 0.43 TCGA-EA-A410-01 2 189449082 189449082 C T GULP1 Missense_Mutation p.R234C 0.43 tolerated(0.07) benign(0.002) TCGA-EA-A410-01 2 192543326 192543326 C T NABP1 5'UTR 0.33 TCGA-EA-A410-01 2 197643629 197643629 G A GTF3C3 Missense_Mutation p.R461C 0.26 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 2 197700536 197700536 T - PGAP1 3'UTR 0.63 TCGA-EA-A410-01 2 202252612 202252612 C T TRAK2 Missense_Mutation p.A504T 0.32 deleterious(0) possibly_damaging(0.752) TCGA-EA-A410-01 2 208618311 208618311 G T CCNYL1 Splice_Site p.X273_splice 0.10 TCGA-EA-A410-01 2 210574848 210574848 G A MAP2 Missense_Mutation p.R1648H 0.39 deleterious(0.01) possibly_damaging(0.908) TCGA-EA-A410-01 2 211421481 211421481 C T CPS1 Silent p.F14F 0.33 TCGA-EA-A410-01 2 215839571 215839571 G A ABCA12 Missense_Mutation p.T1800M 0.18 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 2 219001835 219001835 A - CXCR2 3'UTR 0.63 TCGA-EA-A410-01 2 219526935 219526935 G A BCS1L Missense_Mutation p.R224H 0.43 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 2 219563644 219563644 G A STK36 Missense_Mutation p.R1126Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 2 220115324 220115324 C - TUBA4A Frame_Shift_Del p.G366Vfs*13 0.26 TCGA-EA-A410-01 2 220415086 220415086 C A TMEM198 3'UTR 0.27 TCGA-EA-A410-01 2 220422108 220422108 G A OBSL1 Silent p.C1341C 0.31 TCGA-EA-A410-01 2 227659975 227659975 G - IRS1 Frame_Shift_Del p.K1161Rfs*20 0.32 TCGA-EA-A410-01 2 229889189 229889189 A - PID1 3'UTR 0.42 TCGA-EA-A410-01 2 230910792 230910792 G A SLC16A14 Silent p.N350N 0.35 TCGA-EA-A410-01 2 232070954 232070954 G - ARMC9 Frame_Shift_Del p.D3Tfs*12 0.34 TCGA-EA-A410-01 2 237489420 237489420 C T ACKR3 Silent p.L104L 0.37 TCGA-EA-A410-01 2 238232746 238232747 CA - COL6A3 3'UTR 0.61 TCGA-EA-A410-01 2 238243368 238243368 C T COL6A3 Missense_Mutation p.V3044I 0.44 unknown(0) TCGA-EA-A410-01 2 238296445 238296445 G A COL6A3 Silent p.Y364Y 0.24 TCGA-EA-A410-01 2 239079047 239079047 A - ILKAP 3'UTR 0.40 TCGA-EA-A410-01 2 239157709 239157709 G A PER2 Silent p.D1204D 0.56 TCGA-EA-A410-01 2 239355251 239355251 G A ASB1 3'UTR 0.40 TCGA-EA-A410-01 2 240061410 240061410 G A HDAC4 Silent p.I316I 0.40 TCGA-EA-A410-01 2 24086326 24086326 A - ATAD2B Frame_Shift_Del p.F468Lfs*9 0.40 TCGA-EA-A410-01 2 241389200 241389200 A G AC110619.2 3'UTR 0.44 TCGA-EA-A410-01 2 241390686 241390686 C T AC110619.2 Intron 0.39 TCGA-EA-A410-01 2 241419007 241419007 C T ANKMY1 3'UTR 0.40 TCGA-EA-A410-01 2 241419012 241419012 G A ANKMY1 3'UTR 0.40 TCGA-EA-A410-01 2 241513965 241513965 G A RNPEPL1 Missense_Mutation p.R172H 0.36 tolerated(0.06) probably_damaging(0.989) TCGA-EA-A410-01 2 241664760 241664760 C T KIF1A Missense_Mutation p.R1395H 0.32 deleterious(0) probably_damaging(0.993) TCGA-EA-A410-01 2 24191866 24191866 G A UBXN2A Intron 0.27 TCGA-EA-A410-01 2 242139535 242139535 C T ANO7 Missense_Mutation p.A204V 0.31 tolerated(0.22) benign(0.313) TCGA-EA-A410-01 2 242170197 242170197 G A HDLBP Missense_Mutation p.R1151C 0.36 deleterious(0) probably_damaging(0.946) TCGA-EA-A410-01 2 24300557 24300557 C T TP53I3 Silent p.L297L 0.45 TCGA-EA-A410-01 2 25384103 25384103 G A POMC Silent p.D217D 0.34 TCGA-EA-A410-01 2 26150649 26150649 T - KIF3C 3'UTR 0.43 TCGA-EA-A410-01 2 26676345 26676345 C - DRC1 Frame_Shift_Del p.W618Gfs*19 0.33 TCGA-EA-A410-01 2 27600352 27600352 G A ZNF513 3'UTR 0.37 TCGA-EA-A410-01 2 27850394 27850394 C T CCDC121 Silent p.L253L 0.51 TCGA-EA-A410-01 2 28248201 28248201 C T BRE Missense_Mutation p.R137C 0.48 deleterious(0) probably_damaging(0.953) TCGA-EA-A410-01 2 28843140 28843140 G T PLB1 Silent p.V1108V 0.25 TCGA-EA-A410-01 2 29023103 29023103 T C PPP1CB 3'UTR 0.36 TCGA-EA-A410-01 2 31010187 31010187 G A CAPN13 Missense_Mutation p.A2V 0.49 deleterious(0) probably_damaging(0.927) TCGA-EA-A410-01 2 33042541 33042541 A - TTC27 Frame_Shift_Del p.N777Tfs*42 0.28 TCGA-EA-A410-01 2 3392333 3392333 C T TRAPPC12 Silent p.G313G 0.50 TCGA-EA-A410-01 2 3447586 3447586 C T TRAPPC12 Missense_Mutation p.A485V 0.39 deleterious(0) probably_damaging(0.994) TCGA-EA-A410-01 2 3727463 3727463 C T ALLC Silent p.H59H 0.44 TCGA-EA-A410-01 2 37873899 37873899 T C CDC42EP3 5'UTR 0.10 TCGA-EA-A410-01 2 42558501 42558501 G A EML4 3'UTR 0.07 TCGA-EA-A410-01 2 46414855 46414855 A - PRKCE 3'UTR 0.29 TCGA-EA-A410-01 2 48047581 48047581 C A FBXO11 Nonsense_Mutation p.G573* 0.31 TCGA-EA-A410-01 2 48061746 48061747 - AT FBXO11 Frame_Shift_Ins p.E303Lfs*7 0.37 TCGA-EA-A410-01 2 48606225 48606225 C T FOXN2 3'UTR 0.31 TCGA-EA-A410-01 2 50463974 50463974 G A NRXN1 Nonsense_Mutation p.R1207* 0.40 TCGA-EA-A410-01 2 51259544 51259544 C A NRXN1 5'Flank 0.19 TCGA-EA-A410-01 2 54342774 54342774 C T ACYP2 5'UTR 0.34 TCGA-EA-A410-01 2 55126862 55126862 C T EML6 Missense_Mutation p.R1023C 0.47 deleterious(0) probably_damaging(0.996) TCGA-EA-A410-01 2 55544797 55544797 G A CCDC88A Missense_Mutation p.R1168C 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-EA-A410-01 2 56419936 56419936 G A CCDC85A Missense_Mutation p.A201T 0.38 tolerated(0.27) benign(0.015) TCGA-EA-A410-01 2 5834598 5834598 G A SOX11 3'UTR 0.65 TCGA-EA-A410-01 2 5837992 5837992 C T SOX11 3'UTR 0.39 TCGA-EA-A410-01 2 60686003 60686003 A - BCL11A 3'UTR 0.26 TCGA-EA-A410-01 2 60687187 60687187 A - BCL11A 3'UTR 0.32 TCGA-EA-A410-01 2 60689254 60689254 G - BCL11A Frame_Shift_Del p.L265Cfs*15 0.33 TCGA-EA-A410-01 2 61415065 61415065 T - AHSA2 3'UTR 0.26 TCGA-EA-A410-01 2 62054346 62054346 T - FAM161A Frame_Shift_Del p.A634Hfs*2 0.28 TCGA-EA-A410-01 2 62067423 62067423 G A FAM161A Missense_Mutation p.P239L 0.44 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 2 63831884 63831884 G A MDH1 Missense_Mutation p.G203R 0.35 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 2 64819057 64819057 C T AFTPH Missense_Mutation p.A900V 0.39 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 2 64863194 64863195 - T SERTAD2 Frame_Shift_Ins p.M271Nfs*108 0.36 TCGA-EA-A410-01 2 65309776 65309776 C T CEP68 Silent p.G737G 0.41 TCGA-EA-A410-01 2 65541061 65541061 G A SPRED2 Silent p.G277G 0.26 TCGA-EA-A410-01 2 65918985 65918985 G A AC074391.1 RNA 0.43 TCGA-EA-A410-01 2 70439449 70439449 T - TIA1 3'UTR 0.44 TCGA-EA-A410-01 2 73315626 73315626 G A RAB11FIP5 Missense_Mutation p.R374W 0.53 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 2 74040764 74040764 C T C2orf78 Silent p.G86G 0.29 TCGA-EA-A410-01 2 74274774 74274776 AGA - TET3 In_Frame_Del p.K446del 0.33 TCGA-EA-A410-01 2 74652222 74652222 A G WDR54 Missense_Mutation p.Q219R 0.36 tolerated(0.74) benign(0.001) TCGA-EA-A410-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.34 TCGA-EA-A410-01 2 84847016 84847016 A G DNAH6 Silent p.P1260P 0.50 TCGA-EA-A410-01 2 84864416 84864416 C T DNAH6 Missense_Mutation p.A1579V 0.25 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 2 84928388 84928388 G A DNAH6 Silent p.T2662T 0.36 TCGA-EA-A410-01 2 85576620 85576620 C - RETSAT Frame_Shift_Del p.G295Vfs*12 0.25 TCGA-EA-A410-01 2 85622675 85622675 C T CAPG Missense_Mutation p.A323T 0.46 deleterious(0.01) benign(0.002) TCGA-EA-A410-01 2 85787959 85787959 C T GGCX Missense_Mutation p.A65T 0.41 deleterious(0) possibly_damaging(0.882) TCGA-EA-A410-01 2 85999936 85999936 T - ATOH8 Intron 0.47 TCGA-EA-A410-01 2 86067102 86067102 A - ST3GAL5 3'UTR 0.81 TCGA-EA-A410-01 2 8943254 8943254 A G KIDINS220 Missense_Mutation p.S203P 0.38 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 2 95775728 95775728 T - MRPS5 Frame_Shift_Del p.G113Efs*14 0.21 TCGA-EA-A410-01 2 96459538 96459539 - C AC008268.2 RNA 0.40 TCGA-EA-A410-01 2 96959151 96959151 G A SNRNP200 Nonsense_Mutation p.R647* 0.46 TCGA-EA-A410-01 2 97883090 97883090 C T ANKRD36 Silent p.G1278G 0.15 TCGA-EA-A410-01 2 98994643 98994643 C A CNGA3 Intron 0.49 TCGA-EA-A410-01 2 99779612 99779612 A - LIPT1 3'Flank 0.43 TCGA-EA-A410-01 2 99863144 99863144 G A LYG2 Silent p.C61C 0.39 TCGA-EA-A410-01 2 99936110 99936110 A - TXNDC9 3'UTR 0.42 TCGA-EA-A410-01 3 100471708 100471708 G A ABI3BP Missense_Mutation p.T971I 0.40 deleterious(0) probably_damaging(0.969) TCGA-EA-A410-01 3 101312475 101312475 A - PCNP 3'UTR 0.35 TCGA-EA-A410-01 3 10302160 10302160 G A TATDN2 Missense_Mutation p.A252T 0.44 tolerated(0.5) benign(0.002) TCGA-EA-A410-01 3 108175695 108175695 G A MYH15 Missense_Mutation p.R706C 0.26 deleterious(0.03) benign(0.028) TCGA-EA-A410-01 3 112992072 112992072 G A BOC Missense_Mutation p.R373H 0.37 tolerated(0.13) benign(0.035) TCGA-EA-A410-01 3 113465011 113465011 G A NAA50 5'UTR 0.27 TCGA-EA-A410-01 3 113675306 113675306 T C ZDHHC23 Silent p.S331S 0.40 TCGA-EA-A410-01 3 11599815 11599815 G A VGLL4 3'Flank 0.48 TCGA-EA-A410-01 3 119347661 119347661 G A PLA1A Missense_Mutation p.R412Q 0.36 tolerated(0.46) benign(0.002) TCGA-EA-A410-01 3 119367458 119367458 G T POPDC2 Missense_Mutation p.H220N 0.28 deleterious(0) benign(0.395) TCGA-EA-A410-01 3 120417334 120417334 C T RABL3 Missense_Mutation p.R157H 0.36 deleterious(0.03) benign(0.067) TCGA-EA-A410-01 3 120998685 120998685 G T STXBP5L Silent p.V664V 0.45 TCGA-EA-A410-01 3 121304888 121304888 G A ARGFX Missense_Mutation p.R130Q 0.11 tolerated(0.1) possibly_damaging(0.696) TCGA-EA-A410-01 3 121981118 121981118 G A CASR Silent p.T412T 0.36 TCGA-EA-A410-01 3 122578962 122578964 CTC - DIRC2 In_Frame_Del p.L353del 0.35 TCGA-EA-A410-01 3 124839503 124839503 C - SLC12A8 Frame_Shift_Del p.G255Afs*46 0.34 TCGA-EA-A410-01 3 124951370 124951370 G A ZNF148 Missense_Mutation p.R734C 0.27 deleterious(0.01) possibly_damaging(0.869) TCGA-EA-A410-01 3 126062510 126062510 A - KLF15 3'UTR 0.19 TCGA-EA-A410-01 3 126261309 126261309 C T CHST13 Missense_Mutation p.A305V 0.58 deleterious(0.03) benign(0.207) TCGA-EA-A410-01 3 126724979 126724979 C T PLXNA1 Missense_Mutation p.A652V 0.35 tolerated(1) possibly_damaging(0.783) TCGA-EA-A410-01 3 126725011 126725011 G A PLXNA1 Missense_Mutation p.V663I 0.34 tolerated(0.11) benign(0.099) TCGA-EA-A410-01 3 127335840 127335840 C T MCM2 Missense_Mutation p.A551V 0.29 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 3 128292542 128292542 G A C3orf27 Missense_Mutation p.R11C 0.24 possibly_damaging(0.835) TCGA-EA-A410-01 3 129282079 129282079 G A PLXND1 Missense_Mutation p.T1509M 0.61 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 3 133191271 133191271 G A BFSP2 Missense_Mutation p.R369Q 0.38 tolerated(0.24) probably_damaging(0.961) TCGA-EA-A410-01 3 134978890 134978890 A - EPHB1 3'UTR 0.34 TCGA-EA-A410-01 3 137849760 137849760 G A A4GNT Silent p.N113N 0.30 TCGA-EA-A410-01 3 137964256 137964256 T - ARMC8 Intron 0.33 TCGA-EA-A410-01 3 140419778 140419778 C G TRIM42 Missense_Mutation p.L712V 0.50 tolerated(0.05) probably_damaging(0.94) TCGA-EA-A410-01 3 14172424 14172424 G A TMEM43 Missense_Mutation p.V89M 0.41 deleterious(0) probably_damaging(0.947) TCGA-EA-A410-01 3 14201311 14201311 C T XPC Missense_Mutation p.R307Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 3 142503615 142503615 C T TRPC1 Missense_Mutation p.R344C 0.37 deleterious(0.02) probably_damaging(0.927) TCGA-EA-A410-01 3 143709520 143709520 A - C3orf58 3'UTR 0.35 TCGA-EA-A410-01 3 14552719 14552719 G A GRIP2 RNA 0.28 TCGA-EA-A410-01 3 150347551 150347552 - A SELT 3'UTR 0.43 TCGA-EA-A410-01 3 15084406 15084406 T - NR2C2 Frame_Shift_Del p.F582Lfs*10 0.40 TCGA-EA-A410-01 3 15090107 15090107 A - MRPS25 3'UTR 0.24 TCGA-EA-A410-01 3 151150881 151150881 T - MED12L 3'UTR 0.33 TCGA-EA-A410-01 3 151171451 151171451 G C IGSF10 Missense_Mutation p.P146A 0.44 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 3 152882288 152882288 T - RAP2B 3'UTR 0.38 TCGA-EA-A410-01 3 15455554 15455554 C A METTL6 Missense_Mutation p.G216V 0.12 deleterious(0) probably_damaging(0.994) TCGA-EA-A410-01 3 155198086 155198086 T C PLCH1 3'UTR 0.36 TCGA-EA-A410-01 3 160073880 160073880 G T IFT80 Missense_Mutation p.T233N 0.46 deleterious(0) probably_damaging(0.921) TCGA-EA-A410-01 3 164905296 164905296 A - SLITRK3 3'UTR 0.40 TCGA-EA-A410-01 3 167185055 167185055 A G SERPINI2 Missense_Mutation p.L89P 0.32 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 3 168833257 168833257 T - MECOM Frame_Shift_Del p.G679Efs*30 0.28 TCGA-EA-A410-01 3 169803141 169803141 T A GPR160 3'UTR 0.38 TCGA-EA-A410-01 3 170150539 170150539 G A CLDN11 Missense_Mutation p.V207I 0.38 tolerated(0.08) probably_damaging(0.939) TCGA-EA-A410-01 3 170885049 170885049 A T TNIK Missense_Mutation p.F262I 0.15 deleterious(0) unknown(0) TCGA-EA-A410-01 3 173996842 173996842 C T NLGN1 Nonsense_Mutation p.R351* 0.43 TCGA-EA-A410-01 3 174000599 174000599 T - NLGN1 3'UTR 0.39 TCGA-EA-A410-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.37 tolerated(0.11) possibly_damaging(0.529) TCGA-EA-A410-01 3 179066552 179066552 A T MFN1 Intron 0.30 TCGA-EA-A410-01 3 180326344 180326344 A - TTC14 Intron 0.24 TCGA-EA-A410-01 3 182841854 182841854 C - LAMP3 3'UTR 0.37 TCGA-EA-A410-01 3 182987673 182987674 - T B3GNT5 Frame_Shift_Ins p.W32Lfs*6 0.22 TCGA-EA-A410-01 3 183368748 183368748 G A KLHL24 Missense_Mutation p.E202K 0.28 deleterious(0.04) benign(0.426) TCGA-EA-A410-01 3 183400568 183400568 T - KLHL24 3'UTR 0.67 TCGA-EA-A410-01 3 183446552 183446552 G A YEATS2 Missense_Mutation p.R242H 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-EA-A410-01 3 183490210 183490210 C T YEATS2 Missense_Mutation p.P689S 0.32 tolerated_low_confidence(0.48) benign(0.004) TCGA-EA-A410-01 3 183669337 183669337 G - ABCC5 Frame_Shift_Del p.R946Gfs*15 0.29 TCGA-EA-A410-01 3 183894753 183894753 C T AP2M1 5'UTR 0.36 TCGA-EA-A410-01 3 184038321 184038321 G - EIF4G1 Intron 0.36 TCGA-EA-A410-01 3 184063138 184063138 C - FAM131A 3'Flank 0.43 TCGA-EA-A410-01 3 184090109 184090109 A - THPO 3'UTR 0.25 TCGA-EA-A410-01 3 184104445 184104445 C T CHRD Nonsense_Mutation p.R700* 0.44 TCGA-EA-A410-01 3 194790491 194790491 C T XXYLT1 Missense_Mutation p.V379I 0.43 tolerated(0.39) benign(0.003) TCGA-EA-A410-01 3 195925221 195925221 G - ZDHHC19 Frame_Shift_Del p.P292Qfs*61 0.27 TCGA-EA-A410-01 3 195936344 195936344 A G ZDHHC19 Missense_Mutation p.V104A 0.26 deleterious(0) possibly_damaging(0.852) TCGA-EA-A410-01 3 196083703 196083703 G - UBXN7 Frame_Shift_Del p.H441Qfs*54 0.31 TCGA-EA-A410-01 3 196281070 196281070 T - WDR53 3'UTR 0.50 TCGA-EA-A410-01 3 196528821 196528821 C T PAK2 Missense_Mutation p.R71W 0.33 deleterious(0) probably_damaging(0.984) TCGA-EA-A410-01 3 196539710 196539710 A C PAK2 Missense_Mutation p.N308T 0.38 deleterious(0) probably_damaging(0.946) TCGA-EA-A410-01 3 196663950 196663950 G A NCBP2 Missense_Mutation p.R135W 0.32 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 3 196664498 196664498 C T NCBP2 Silent p.A94A 0.24 TCGA-EA-A410-01 3 196674301 196674301 C - PIGZ Frame_Shift_Del p.T490Lfs*10 0.29 TCGA-EA-A410-01 3 196674507 196674507 C T PIGZ Missense_Mutation p.A421T 0.14 tolerated(0.07) benign(0.041) TCGA-EA-A410-01 3 197610589 197610589 C T LRCH3 3'UTR 0.23 TCGA-EA-A410-01 3 20225413 20225413 C T SGOL1 Missense_Mutation p.R36H 0.37 deleterious(0.02) probably_damaging(0.985) TCGA-EA-A410-01 3 27233519 27233519 C T NEK10 Splice_Site p.X835_splice 0.42 TCGA-EA-A410-01 3 27761702 27761703 - C EOMES Frame_Shift_Ins p.K333Qfs*11 0.26 TCGA-EA-A410-01 3 28382002 28382002 G A AZI2 Missense_Mutation p.A36V 0.36 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 3 3078995 3078995 G T CNTN4 Missense_Mutation p.R692L 0.43 tolerated(0.71) benign(0.006) TCGA-EA-A410-01 3 32571049 32571050 - T DYNC1LI1 Frame_Shift_Ins p.I430Nfs*2 0.47 TCGA-EA-A410-01 3 32815136 32815136 C A CNOT10 3'UTR 0.36 TCGA-EA-A410-01 3 32915372 32915372 G A TRIM71 Silent p.R305R 0.43 TCGA-EA-A410-01 3 35721392 35721392 G A ARPP21 5'UTR 0.49 TCGA-EA-A410-01 3 36872848 36872848 G A TRANK1 Silent p.T2698T 0.39 TCGA-EA-A410-01 3 36897730 36897730 G A TRANK1 Silent p.C1117C 0.28 TCGA-EA-A410-01 3 38023212 38023212 T - CTDSPL 3'UTR 0.41 TCGA-EA-A410-01 3 38170828 38170828 C T ACAA1 Silent p.S166S 0.32 TCGA-EA-A410-01 3 38316512 38316512 C T SLC22A13 Nonsense_Mutation p.Q224* 0.21 TCGA-EA-A410-01 3 38904713 38904713 T - SCN11A Frame_Shift_Del p.K1343Nfs*10 0.27 TCGA-EA-A410-01 3 40575422 40575422 A - ZNF621 3'UTR 0.39 TCGA-EA-A410-01 3 40575606 40575606 T - ZNF621 3'UTR 0.28 TCGA-EA-A410-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.40 deleterious(0) possibly_damaging(0.844) TCGA-EA-A410-01 3 41280637 41280637 G A CTNNB1 Missense_Mutation p.R717H 0.43 tolerated_low_confidence(0.49) benign(0.001) TCGA-EA-A410-01 3 43390415 43390415 G A SNRK 3'UTR 0.28 TCGA-EA-A410-01 3 4403848 4403848 G A SUMF1 Missense_Mutation p.R369C 0.44 deleterious(0.03) benign(0) TCGA-EA-A410-01 3 45719753 45719753 A G LIMD1 3'UTR 0.35 TCGA-EA-A410-01 3 46717846 46717846 A C ALS2CL Missense_Mutation p.L692R 0.35 deleterious(0) probably_damaging(0.98) TCGA-EA-A410-01 3 47036856 47036856 A G NBEAL2 Missense_Mutation p.D544G 0.36 tolerated(0.1) benign(0.001) TCGA-EA-A410-01 3 47037327 47037328 CT - NBEAL2 Frame_Shift_Del p.S675Cfs*42 0.37 TCGA-EA-A410-01 3 47040347 47040347 C T NBEAL2 Missense_Mutation p.A1121V 0.07 deleterious(0.04) benign(0.017) TCGA-EA-A410-01 3 47044502 47044502 C T NBEAL2 Missense_Mutation p.R1839C 0.43 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 3 47098435 47098435 A G SETD2 Missense_Mutation p.V2280A 0.51 deleterious(0.02) benign(0.014) TCGA-EA-A410-01 3 47162101 47162101 T A SETD2 Missense_Mutation p.D1342V 0.32 tolerated_low_confidence(0.14) benign(0.048) TCGA-EA-A410-01 3 48310953 48310953 G A ZNF589 3'UTR 0.44 TCGA-EA-A410-01 3 48502033 48502033 G - ATRIP Frame_Shift_Del p.V529Lfs*11 0.25 TCGA-EA-A410-01 3 48603069 48603069 G A COL7A1 Nonsense_Mutation p.R2814* 0.42 TCGA-EA-A410-01 3 48625349 48625349 G T COL7A1 Missense_Mutation p.L912M 0.28 unknown(0) TCGA-EA-A410-01 3 49094920 49094920 G A QRICH1 Missense_Mutation p.T238M 0.41 deleterious(0.02) benign(0.266) TCGA-EA-A410-01 3 49459624 49459624 C T AMT Silent p.L57L 0.47 TCGA-EA-A410-01 3 49662668 49662668 C - BSN Frame_Shift_Del p.L164Ffs*49 0.33 TCGA-EA-A410-01 3 49694496 49694496 C - BSN Frame_Shift_Del p.T2506Hfs*63 0.33 TCGA-EA-A410-01 3 49719221 49719221 T A APEH Missense_Mutation p.M502K 0.35 deleterious(0) benign(0.101) TCGA-EA-A410-01 3 49751534 49751534 C T RNF123 Silent p.F979F 0.38 TCGA-EA-A410-01 3 50154858 50154858 G A RBM5 Intron 0.38 TCGA-EA-A410-01 3 50220668 50220668 C T SEMA3F Silent p.Y356Y 0.34 TCGA-EA-A410-01 3 5026719 5026719 T - BHLHE40 3'UTR 0.59 TCGA-EA-A410-01 3 50387239 50387239 C T NPRL2 Missense_Mutation p.G66S 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-EA-A410-01 3 50401747 50401747 C - CACNA2D2 3'Flank 0.29 TCGA-EA-A410-01 3 50608420 50608420 C A HEMK1 5'UTR 0.24 TCGA-EA-A410-01 3 51198101 51198101 G T DOCK3 Missense_Mutation p.K335N 0.25 tolerated(0.14) possibly_damaging(0.776) TCGA-EA-A410-01 3 51399963 51399963 G A DOCK3 Silent p.A1717A 0.35 TCGA-EA-A410-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.34 TCGA-EA-A410-01 3 51457933 51457933 G A VPRBP Nonsense_Mutation p.R402* 0.35 TCGA-EA-A410-01 3 51708396 51708396 G A TEX264 Missense_Mutation p.G26R 0.47 tolerated(0.35) benign(0.022) TCGA-EA-A410-01 3 51749693 51749693 G A GRM2 Missense_Mutation p.R635Q 0.34 tolerated(0.24) possibly_damaging(0.692) TCGA-EA-A410-01 3 51971267 51971267 A G RRP9 Missense_Mutation p.V153A 0.34 tolerated(0.23) possibly_damaging(0.585) TCGA-EA-A410-01 3 52255326 52255326 C T TLR9 Silent p.Q1156Q 0.45 TCGA-EA-A410-01 3 52536221 52536221 G A STAB1 Missense_Mutation p.R155Q 0.43 tolerated(0.14) benign(0.095) TCGA-EA-A410-01 3 52547908 52547908 C - STAB1 Frame_Shift_Del p.R1122Efs*108 0.41 TCGA-EA-A410-01 3 52550727 52550727 G A STAB1 Missense_Mutation p.G1436R 0.54 deleterious(0.04) benign(0.251) TCGA-EA-A410-01 3 52555698 52555698 C T STAB1 Missense_Mutation p.R2049C 0.36 deleterious(0.03) possibly_damaging(0.684) TCGA-EA-A410-01 3 52867331 52867331 G A TMEM110-MUSTN1 3'UTR 0.40 TCGA-EA-A410-01 3 53213648 53213648 G A PRKCD Silent p.S57S 0.44 TCGA-EA-A410-01 3 53215505 53215505 C T PRKCD Missense_Mutation p.T141M 0.25 tolerated(0.12) probably_damaging(0.97) TCGA-EA-A410-01 3 54952710 54952710 C T LRTM1 Missense_Mutation p.E272K 0.40 deleterious(0.01) possibly_damaging(0.656) TCGA-EA-A410-01 3 54952782 54952782 C T LRTM1 Missense_Mutation p.G248S 0.37 tolerated(0.4) benign(0.011) TCGA-EA-A410-01 3 57494236 57494236 T C DNAH12 Missense_Mutation p.S192G 0.35 deleterious(0.01) benign(0.287) TCGA-EA-A410-01 3 58134405 58134405 G A FLNB Missense_Mutation p.E2004K 0.28 deleterious(0.03) possibly_damaging(0.492) TCGA-EA-A410-01 3 62189454 62189454 C T PTPRG Missense_Mutation p.A662V 0.22 tolerated(0.43) benign(0.001) TCGA-EA-A410-01 3 63816799 63816800 - A C3orf49 Frame_Shift_Ins p.R198Efs*8 0.30 TCGA-EA-A410-01 3 64184570 64184570 T C PRICKLE2 Missense_Mutation p.T12A 0.10 deleterious(0.04) benign(0.002) TCGA-EA-A410-01 3 66293635 66293635 T - SLC25A26 Frame_Shift_Del p.F68Lfs*7 0.34 TCGA-EA-A410-01 3 69036618 69036618 C T EOGT Missense_Mutation p.R293Q 0.32 deleterious(0) benign(0.065) TCGA-EA-A410-01 3 72424632 72424632 C T RYBP 3'UTR 0.32 TCGA-EA-A410-01 3 73434072 73434072 C T PDZRN3 Missense_Mutation p.D549N 0.48 tolerated(0.07) benign(0.002) TCGA-EA-A410-01 3 74351870 74351870 A G CNTN3 Missense_Mutation p.V586A 0.12 tolerated(0.11) probably_damaging(0.998) TCGA-EA-A410-01 3 75679925 75679925 G A MIR1324 RNA 0.07 TCGA-EA-A410-01 3 88040764 88040764 C T HTR1F Missense_Mutation p.R289W 0.32 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 3 88105105 88105105 C T CGGBP1 Missense_Mutation p.A8T 0.29 tolerated(0.79) benign(0.002) TCGA-EA-A410-01 3 88189424 88189427 TATT - ZNF654 Frame_Shift_Del p.Y322* 0.35 TCGA-EA-A410-01 3 98515112 98515112 A - DCBLD2 3'UTR 0.38 TCGA-EA-A410-01 3 99568329 99568329 C T FILIP1L Missense_Mutation p.A731T 0.38 tolerated(0.52) benign(0.022) TCGA-EA-A410-01 4 100480442 100480443 - T TRMT10A Frame_Shift_Ins p.Q19Afs*5 0.30 TCGA-EA-A410-01 4 101111150 101111151 CT - DDIT4L 5'UTR 0.19 TCGA-EA-A410-01 4 103970157 103970157 G A SLC9B2 Silent p.G202G 0.25 TCGA-EA-A410-01 4 106159451 106159451 G A TET2 Intron 0.36 TCGA-EA-A410-01 4 106616790 106616791 - T INTS12 Frame_Shift_Ins p.N64Kfs*5 0.13 TCGA-EA-A410-01 4 110790831 110790831 G A LRIT3 Missense_Mutation p.R309K 0.36 deleterious(0.02) probably_damaging(0.937) TCGA-EA-A410-01 4 118004859 118004859 T - TRAM1L1 3'UTR 0.32 TCGA-EA-A410-01 4 120474861 120474861 A G PDE5A Missense_Mutation p.Y414H 0.35 tolerated(0.24) benign(0.444) TCGA-EA-A410-01 4 126237860 126237860 C T FAT4 Silent p.R98R 0.30 TCGA-EA-A410-01 4 129783067 129783067 T A JADE1 Missense_Mutation p.L397Q 0.33 tolerated(0.3) benign(0.282) TCGA-EA-A410-01 4 13383115 13383116 AG - RAB28 Frame_Shift_Del p.S165Cfs*11 0.32 TCGA-EA-A410-01 4 13602807 13602807 C T BOD1L1 Missense_Mutation p.S1906N 0.32 benign(0.004) TCGA-EA-A410-01 4 138442378 138442378 C T PCDH18 Silent p.P1071P 0.34 TCGA-EA-A410-01 4 140427853 140427853 A - SETD7 3'UTR 0.64 TCGA-EA-A410-01 4 141832231 141832231 T - RNF150 Intron 0.50 TCGA-EA-A410-01 4 144109070 144109070 G A USP38 Silent p.T258T 0.34 TCGA-EA-A410-01 4 146049438 146049438 T C ABCE1 3'UTR 0.42 TCGA-EA-A410-01 4 146567233 146567233 G A MMAA Missense_Mutation p.V220M 0.39 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 4 146813422 146813422 G A ZNF827 Silent p.R413R 0.08 TCGA-EA-A410-01 4 149035327 149035327 C A NR3C2 Missense_Mutation p.K909N 0.06 deleterious(0.03) possibly_damaging(0.653) TCGA-EA-A410-01 4 15070967 15070968 - A CPEB2 3'UTR 0.21 TCGA-EA-A410-01 4 152550967 152550967 C T FAM160A1 Silent p.H364H 0.31 TCGA-EA-A410-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.26 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 4 153259064 153259064 G A FBXW7 Missense_Mutation p.L251F 0.57 tolerated(0.29) benign(0.41) TCGA-EA-A410-01 4 153874672 153874672 C T FHDC1 Missense_Mutation p.R174W 0.40 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 4 153893619 153893619 A - FHDC1 Frame_Shift_Del p.T439Pfs*2 0.26 TCGA-EA-A410-01 4 15689831 15689832 - A FAM200B Frame_Shift_Ins p.S414Ifs*8 0.29 TCGA-EA-A410-01 4 164394344 164394344 C T TKTL2 Silent p.A181A 0.48 TCGA-EA-A410-01 4 164534608 164534608 T - MARCH1 Intron 0.26 TCGA-EA-A410-01 4 166220780 166220780 G A KLHL2 Missense_Mutation p.R302Q 0.29 deleterious(0.05) benign(0.102) TCGA-EA-A410-01 4 167022771 167022771 T - TLL1 3'UTR 0.35 TCGA-EA-A410-01 4 174447936 174447936 C T HAND2 3'UTR 0.52 TCGA-EA-A410-01 4 175180873 175180873 T G FBXO8 Missense_Mutation p.T145P 0.36 deleterious(0.01) possibly_damaging(0.819) TCGA-EA-A410-01 4 177162660 177162660 C T ASB5 Intron 0.29 TCGA-EA-A410-01 4 183267887 183267887 C A TENM3 Missense_Mutation p.P106T 0.34 tolerated_low_confidence(0.3) possibly_damaging(0.876) TCGA-EA-A410-01 4 183522271 183522271 C T TENM3 Nonsense_Mutation p.Q236* 0.28 TCGA-EA-A410-01 4 184931578 184931578 C T STOX2 Silent p.D529D 0.43 TCGA-EA-A410-01 4 184932017 184932017 G A STOX2 Missense_Mutation p.A676T 0.33 tolerated_low_confidence(0.22) benign(0.036) TCGA-EA-A410-01 4 185684330 185684330 G A ACSL1 Silent p.G504G 0.44 TCGA-EA-A410-01 4 185941928 185941928 G A HELT 3'Flank 0.46 TCGA-EA-A410-01 4 187509412 187509412 A - FAT1 3'UTR 0.29 TCGA-EA-A410-01 4 187557177 187557177 A G FAT1 Splice_Site p.X1395_splice 0.40 TCGA-EA-A410-01 4 187630897 187630897 G A FAT1 Nonsense_Mutation p.Q29* 0.27 TCGA-EA-A410-01 4 1985205 1985205 G A NELFA Silent p.D487D 0.23 TCGA-EA-A410-01 4 1986588 1986588 G A NELFA Missense_Mutation p.T339M 0.34 deleterious(0.05) probably_damaging(0.927) TCGA-EA-A410-01 4 2242634 2242634 T - HAUS3 Frame_Shift_Del p.I14Lfs*27 0.27 TCGA-EA-A410-01 4 25335045 25335045 C T ZCCHC4 Silent p.L190L 0.22 TCGA-EA-A410-01 4 2939958 2939958 A - NOP14 3'UTR 0.33 TCGA-EA-A410-01 4 3219671 3219671 C T HTT Missense_Mutation p.P2412S 0.09 probably_damaging(0.998) TCGA-EA-A410-01 4 3432494 3432494 C T RGS12 Missense_Mutation p.A1309V 0.41 tolerated(0.62) benign(0.002) TCGA-EA-A410-01 4 36134895 36134895 T C ARAP2 Missense_Mutation p.D1127G 0.41 tolerated(0.13) benign(0.318) TCGA-EA-A410-01 4 36160999 36160999 A G ARAP2 Silent p.A857A 0.39 TCGA-EA-A410-01 4 37863197 37863197 G A PGM2 Silent p.Q601Q 0.37 TCGA-EA-A410-01 4 38119747 38119747 G A TBC1D1 Missense_Mutation p.A966T 0.34 tolerated(0.08) probably_damaging(0.996) TCGA-EA-A410-01 4 39462464 39462464 A - LIAS Frame_Shift_Del p.K36Rfs*31 0.37 TCGA-EA-A410-01 4 40045471 40045471 A G RP11-333E13.4 RNA 0.30 TCGA-EA-A410-01 4 41746280 41746280 A - PHOX2B 3'UTR 0.24 TCGA-EA-A410-01 4 41746863 41746863 A - PHOX2B 3'UTR 0.39 TCGA-EA-A410-01 4 47525087 47525087 C T ATP10D Missense_Mutation p.R182C 0.37 deleterious(0.01) probably_damaging(0.946) TCGA-EA-A410-01 4 47596290 47596290 A G CORIN 3'UTR 0.29 TCGA-EA-A410-01 4 47695012 47695012 G A CORIN Silent p.D296D 0.36 TCGA-EA-A410-01 4 5448451 5448451 C A STK32B Missense_Mutation p.P205H 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-EA-A410-01 4 55139809 55139809 C T PDGFRA Silent p.F490F 0.27 TCGA-EA-A410-01 4 55981462 55981462 C T KDR Missense_Mutation p.V159M 0.38 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 4 57907077 57907077 G - IGFBP7 Frame_Shift_Del p.K167Rfs*13 0.29 TCGA-EA-A410-01 4 6037659 6037659 C T JAKMIP1 Missense_Mutation p.R784H 0.37 deleterious(0) possibly_damaging(0.885) TCGA-EA-A410-01 4 62383147 62383147 G A LPHN3 Intron 0.39 TCGA-EA-A410-01 4 62937943 62937943 A - LPHN3 3'UTR 0.50 TCGA-EA-A410-01 4 66356360 66356360 C T EPHA5 Silent p.P379P 0.29 TCGA-EA-A410-01 4 68928691 68928691 C T TMPRSS11F Intron 0.30 TCGA-EA-A410-01 4 68995527 68995527 C T TMPRSS11F Splice_Site p.X4_splice 0.38 TCGA-EA-A410-01 4 7056128 7056128 G A TADA2B Missense_Mutation p.A204T 0.43 tolerated(0.05) benign(0.339) TCGA-EA-A410-01 4 70592713 70592713 A T SULT1B1 3'UTR 0.25 TCGA-EA-A410-01 4 71347029 71347029 G A MUC7 Missense_Mutation p.A190T 0.32 tolerated(0.66) unknown(0) TCGA-EA-A410-01 4 71398193 71398194 - T AMTN 3'UTR 0.24 TCGA-EA-A410-01 4 71628266 71628266 T C RUFY3 Missense_Mutation p.M70T 0.41 tolerated(0.47) benign(0.218) TCGA-EA-A410-01 4 71889289 71889289 T C DCK Missense_Mutation p.S139P 0.38 tolerated(0.13) probably_damaging(0.938) TCGA-EA-A410-01 4 74007553 74007553 C T ANKRD17 Missense_Mutation p.R746H 0.45 probably_damaging(0.973) TCGA-EA-A410-01 4 74608180 74608180 A - IL8 Frame_Shift_Del 0.24 TCGA-EA-A410-01 4 76416829 76416829 C T RCHY1 Missense_Mutation p.M176I 0.25 deleterious(0.01) benign(0.11) TCGA-EA-A410-01 4 7728565 7728565 G A SORCS2 Missense_Mutation p.R935H 0.39 tolerated(0.15) possibly_damaging(0.869) TCGA-EA-A410-01 4 7761194 7761194 G A AFAP1 3'UTR 0.36 TCGA-EA-A410-01 4 77675942 77675942 G A SHROOM3 Missense_Mutation p.A1436T 0.32 tolerated(0.75) benign(0) TCGA-EA-A410-01 4 77957804 77957804 T - SEPT11 3'UTR 0.81 TCGA-EA-A410-01 4 78634766 78634766 T - CNOT6L 3'UTR 0.34 TCGA-EA-A410-01 4 78636848 78636848 T - CNOT6L 3'UTR 0.26 TCGA-EA-A410-01 4 78873856 78873856 A G MRPL1 3'UTR 0.28 TCGA-EA-A410-01 4 79353522 79353522 A G FRAS1 Missense_Mutation p.T1661A 0.40 possibly_damaging(0.744) TCGA-EA-A410-01 4 82125923 82125923 C T PRKG2 Silent p.P93P 0.43 TCGA-EA-A410-01 4 8358962 8358962 G A RP11-774O3.3 RNA 0.33 TCGA-EA-A410-01 4 84502961 84502961 G A AGPAT9 Missense_Mutation p.R152H 0.32 deleterious(0) probably_damaging(0.991) TCGA-EA-A410-01 4 85658516 85658516 C T WDFY3 Missense_Mutation p.R2193H 0.24 tolerated(0.37) benign(0.008) TCGA-EA-A410-01 4 8613845 8613845 G - CPZ Frame_Shift_Del p.S442Afs*30 0.37 TCGA-EA-A410-01 4 882759 882759 C A GAK Splice_Site p.X361_splice 0.41 TCGA-EA-A410-01 4 89679957 89679957 G A FAM13A Silent p.S558S 0.31 TCGA-EA-A410-01 4 91389507 91389507 T C CCSER1 Splice_Site p.X575_splice 0.40 TCGA-EA-A410-01 4 93511327 93511327 G A GRID2 Missense_Mutation p.R45H 0.47 deleterious(0.01) probably_damaging(0.956) TCGA-EA-A410-01 4 96123987 96123987 C T UNC5C Silent p.A677A 0.37 TCGA-EA-A410-01 4 9785349 9785349 G C DRD5 3'UTR 0.30 TCGA-EA-A410-01 4 9785421 9785421 G T DRD5 3'UTR 0.16 TCGA-EA-A410-01 4 983932 983932 G A SLC26A1 Silent p.V265V 0.44 TCGA-EA-A410-01 4 99850483 99850483 T - EIF4E 5'Flank 0.36 TCGA-EA-A410-01 5 102433418 102433418 A G GIN1 Missense_Mutation p.V236A 0.35 tolerated(0.57) benign(0.004) TCGA-EA-A410-01 5 102538866 102538866 T - PPIP5K2 3'UTR 0.33 TCGA-EA-A410-01 5 107521920 107521920 C T FBXL17 Missense_Mutation p.R548H 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-EA-A410-01 5 110440033 110440033 C T WDR36 Silent p.G352G 0.39 TCGA-EA-A410-01 5 122713213 122713213 T - CEP120 Frame_Shift_Del p.K738Rfs*29 0.44 TCGA-EA-A410-01 5 126145972 126145972 A T LMNB1 Missense_Mutation p.E248V 0.33 deleterious(0) probably_damaging(0.948) TCGA-EA-A410-01 5 127594273 127594273 G A FBN2 3'UTR 0.29 TCGA-EA-A410-01 5 127594483 127594483 C T FBN2 3'UTR 0.45 TCGA-EA-A410-01 5 127671695 127671695 G - FBN2 Frame_Shift_Del p.R1237Afs*11 0.38 TCGA-EA-A410-01 5 128364127 128364127 C T SLC27A6 Missense_Mutation p.A515V 0.41 tolerated(0.09) benign(0.003) TCGA-EA-A410-01 5 128368800 128368800 A G SLC27A6 Missense_Mutation p.E562G 0.34 deleterious(0.03) benign(0.009) TCGA-EA-A410-01 5 129037270 129037270 G A ADAMTS19 Silent p.A1042A 0.38 TCGA-EA-A410-01 5 130815369 130815369 T - RAPGEF6 Frame_Shift_Del p.S640Vfs*59 0.32 TCGA-EA-A410-01 5 132051497 132051497 G A KIF3A Missense_Mutation p.R361C 0.29 deleterious(0) probably_damaging(0.941) TCGA-EA-A410-01 5 13766274 13766274 C T DNAH5 Silent p.S3304S 0.41 TCGA-EA-A410-01 5 137682552 137682552 G - FAM53C Frame_Shift_Del p.A363Lfs*9 0.36 TCGA-EA-A410-01 5 138268379 138268379 G A CTNNA1 Missense_Mutation p.G804D 0.52 deleterious(0.01) possibly_damaging(0.728) TCGA-EA-A410-01 5 138941982 138941982 A - UBE2D2 Intron 0.49 TCGA-EA-A410-01 5 140021325 140021325 C T TMCO6 Nonsense_Mutation p.R92* 0.35 TCGA-EA-A410-01 5 140166725 140166725 G T PCDHA1 Missense_Mutation p.G284C 0.41 tolerated_low_confidence(0.17) benign(0.121) TCGA-EA-A410-01 5 140166965 140166965 C A PCDHA1 Missense_Mutation p.P364T 0.27 tolerated_low_confidence(0.05) benign(0.045) TCGA-EA-A410-01 5 140176975 140176975 T C PCDHA2 Intron 0.46 TCGA-EA-A410-01 5 140202884 140202884 G A PCDHA5 Silent p.S508S 0.35 TCGA-EA-A410-01 5 140237928 140237928 G A PCDHA10 Silent p.A765A 0.45 TCGA-EA-A410-01 5 140263409 140263409 C T PCDHA13 Missense_Mutation p.A519V 0.42 deleterious_low_confidence(0.04) benign(0.097) TCGA-EA-A410-01 5 140346671 140346671 G A PCDHAC2 Missense_Mutation p.R107Q 0.37 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 5 140475722 140475722 G A PCDHB2 Missense_Mutation p.A450T 0.31 deleterious_low_confidence(0.02) benign(0.271) TCGA-EA-A410-01 5 140476254 140476254 G A PCDHB2 Missense_Mutation p.R627H 0.40 deleterious_low_confidence(0.04) benign(0.262) TCGA-EA-A410-01 5 140537487 140537487 G A PCDHB17 3'UTR 0.06 TCGA-EA-A410-01 5 140554539 140554539 C T PCDHB7 Missense_Mutation p.A708V 0.15 tolerated_low_confidence(0.13) benign(0.091) TCGA-EA-A410-01 5 140563401 140563401 G A PCDHB16 Missense_Mutation p.V423I 0.38 deleterious_low_confidence(0.03) benign(0.05) TCGA-EA-A410-01 5 140564063 140564063 G T PCDHB16 Silent p.L643L 0.19 TCGA-EA-A410-01 5 140589130 140589130 C T PCDHB12 Silent p.G217G 0.44 TCGA-EA-A410-01 5 140590217 140590217 G A PCDHB12 Missense_Mutation p.A580T 0.04 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-EA-A410-01 5 140595095 140595095 C T PCDHB13 Missense_Mutation p.A467V 0.37 deleterious_low_confidence(0.01) benign(0.066) TCGA-EA-A410-01 5 140595369 140595369 G A PCDHB13 Silent p.S558S 0.44 TCGA-EA-A410-01 5 140603691 140603691 A G PCDHB14 Missense_Mutation p.E205G 0.41 deleterious_low_confidence(0.02) benign(0.12) TCGA-EA-A410-01 5 140626370 140626370 G A PCDHB15 Silent p.A408A 0.44 TCGA-EA-A410-01 5 140725096 140725096 C A PCDHGA3 Missense_Mutation p.A499E 0.24 deleterious_low_confidence(0.04) benign(0.238) TCGA-EA-A410-01 5 140725113 140725113 G A PCDHGA3 Missense_Mutation p.V505I 0.25 tolerated_low_confidence(0.42) benign(0.147) TCGA-EA-A410-01 5 140731377 140731377 A G PCDHGB1 Missense_Mutation p.D517G 0.35 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 5 140744873 140744873 G A PCDHGA5 Missense_Mutation p.A326T 0.38 deleterious_low_confidence(0) possibly_damaging(0.523) TCGA-EA-A410-01 5 140807584 140807584 G A PCDHGB6 Intron 0.47 TCGA-EA-A410-01 5 140953387 140953387 G - DIAPH1 Frame_Shift_Del p.P677Hfs*91 0.80 TCGA-EA-A410-01 5 141041640 141041640 G A ARAP3 Missense_Mutation p.R995W 0.41 deleterious(0) possibly_damaging(0.846) TCGA-EA-A410-01 5 141336975 141336975 C T PCDH12 Missense_Mutation p.A148T 0.22 deleterious(0) probably_damaging(0.994) TCGA-EA-A410-01 5 141694197 141694197 G A SPRY4 Silent p.C182C 0.25 TCGA-EA-A410-01 5 14378202 14378202 A G TRIO Missense_Mutation p.Q1138R 0.42 possibly_damaging(0.867) TCGA-EA-A410-01 5 14488887 14488887 A - TRIO Intron 0.53 TCGA-EA-A410-01 5 145890610 145890610 T - TCERG1 3'UTR 0.39 TCGA-EA-A410-01 5 146754725 146754725 A - STK32A Frame_Shift_Del p.K328Sfs*10 0.38 TCGA-EA-A410-01 5 14711209 14711209 A - ANKH 3'UTR 0.43 TCGA-EA-A410-01 5 148875718 148875718 T - CSNK1A1 3'Flank 0.22 TCGA-EA-A410-01 5 148997781 148997781 G A ARHGEF37 Missense_Mutation p.R234Q 0.05 deleterious(0.01) possibly_damaging(0.638) TCGA-EA-A410-01 5 149206386 149206386 C - PPARGC1B Frame_Shift_Del p.S137Afs*69 0.28 TCGA-EA-A410-01 5 149907838 149907838 G A NDST1 Missense_Mutation p.R329H 0.32 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 5 150502519 150502519 G A ANXA6 Missense_Mutation p.R398W 0.44 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 5 150639342 150639342 G T GM2A Missense_Mutation p.W36C 0.40 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 5 150885099 150885099 C T FAT2 3'UTR 0.35 TCGA-EA-A410-01 5 151045978 151045978 C T SPARC Missense_Mutation p.M226I 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-EA-A410-01 5 151184222 151184223 - T G3BP1 3'UTR 0.29 TCGA-EA-A410-01 5 153854588 153854588 G - HAND1 3'UTR 0.40 TCGA-EA-A410-01 5 156906126 156906126 A T ADAM19 3'UTR 0.45 TCGA-EA-A410-01 5 156906536 156906536 G A ADAM19 3'UTR 0.32 TCGA-EA-A410-01 5 156945844 156945844 G A ADAM19 Missense_Mutation p.A218V 0.26 deleterious(0) probably_damaging(0.994) TCGA-EA-A410-01 5 159820772 159820773 - T C5orf54 Frame_Shift_Ins p.V576Sfs*9 0.49 TCGA-EA-A410-01 5 162945171 162945171 A T MAT2B Intron 0.50 TCGA-EA-A410-01 5 16704716 16704716 G A MYO10 Missense_Mutation p.R750W 0.38 deleterious(0) possibly_damaging(0.861) TCGA-EA-A410-01 5 167643889 167643889 C T TENM2 Missense_Mutation p.R1399W 0.40 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 5 167674560 167674560 G A TENM2 Missense_Mutation p.D2206N 0.37 tolerated(0.12) probably_damaging(0.999) TCGA-EA-A410-01 5 168098455 168098455 C T SLIT3 Missense_Mutation p.R1292H 0.36 deleterious(0.02) probably_damaging(1) TCGA-EA-A410-01 5 175110994 175110994 C T HRH2 Missense_Mutation p.A253V 0.35 tolerated(1) benign(0.006) TCGA-EA-A410-01 5 175824701 175824701 G A CLTB Missense_Mutation p.T124M 0.40 tolerated(0.15) benign(0.12) TCGA-EA-A410-01 5 175936887 175936887 T - FAF2 3'UTR 0.37 TCGA-EA-A410-01 5 175954516 175954516 C T RNF44 3'UTR 0.30 TCGA-EA-A410-01 5 176084343 176084343 G A TSPAN17 Intron 0.62 TCGA-EA-A410-01 5 176314453 176314453 G A HK3 Silent p.S533S 0.29 TCGA-EA-A410-01 5 176317635 176317635 C - HK3 Splice_Site p.X210_splice 0.28 TCGA-EA-A410-01 5 176638210 176638210 G A NSD1 Missense_Mutation p.R937Q 0.29 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-EA-A410-01 5 176675269 176675269 A - NSD1 Frame_Shift_Del p.M1531Cfs*43 0.29 TCGA-EA-A410-01 5 176958415 176958415 G A FAM193B Intron 0.35 TCGA-EA-A410-01 5 178053982 178053982 G A CLK4 5'UTR 0.58 TCGA-EA-A410-01 5 178154034 178154034 C T ZNF354A Silent p.V42V 0.30 TCGA-EA-A410-01 5 179036469 179036469 C T RUFY1 Silent p.C692C 0.43 TCGA-EA-A410-01 5 179289510 179289510 T C TBC1D9B 3'UTR 0.27 TCGA-EA-A410-01 5 179301964 179301964 G A TBC1D9B Silent p.D708D 0.35 TCGA-EA-A410-01 5 179302956 179302956 G A TBC1D9B Missense_Mutation p.R622C 0.40 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 5 180035263 180035266 TCTC - FLT4 Intron 0.42 TCGA-EA-A410-01 5 180053141 180053141 G A FLT4 Missense_Mutation p.R410C 0.38 tolerated(0.07) benign(0.009) TCGA-EA-A410-01 5 180219476 180219476 C T MGAT1 Missense_Mutation p.D166N 0.67 benign(0.076) TCGA-EA-A410-01 5 180661521 180661521 C T TRIM41 Missense_Mutation p.R547W 0.37 deleterious(0) probably_damaging(0.981) TCGA-EA-A410-01 5 1882016 1882016 G A IRX4 Missense_Mutation p.A68V 0.25 deleterious(0.01) benign(0.206) TCGA-EA-A410-01 5 205503 205503 C T CCDC127 Missense_Mutation p.G231D 0.42 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 5 35049429 35049429 G A AGXT2 5'Flank 0.35 TCGA-EA-A410-01 5 36103983 36103983 G A LMBRD2 3'UTR 0.37 TCGA-EA-A410-01 5 37020568 37020568 G A NIPBL Missense_Mutation p.R1673H 0.27 deleterious(0.03) possibly_damaging(0.508) TCGA-EA-A410-01 5 39202091 39202091 C - FYB Frame_Shift_Del p.P335Hfs*44 0.29 TCGA-EA-A410-01 5 39375171 39375171 G A DAB2 Missense_Mutation p.P755S 0.40 tolerated(0.29) benign(0.005) TCGA-EA-A410-01 5 41312240 41312240 G A PLCXD3 3'UTR 0.25 TCGA-EA-A410-01 5 41739523 41739523 T C OXCT1 Missense_Mutation p.D497G 0.22 deleterious(0) possibly_damaging(0.651) TCGA-EA-A410-01 5 55008363 55008363 G T SLC38A9 5'UTR 0.26 TCGA-EA-A410-01 5 57749859 57749859 A - PLK2 3'UTR 0.26 TCGA-EA-A410-01 5 64965683 64965683 A - SGTB 3'UTR 0.21 TCGA-EA-A410-01 5 70806543 70806543 G A BDP1 Silent p.S1208S 0.37 TCGA-EA-A410-01 5 71494445 71494445 C A MAP1B Missense_Mutation p.P1755T 0.41 benign(0.304) TCGA-EA-A410-01 5 72205474 72205474 G A TNPO1 3'UTR 0.50 TCGA-EA-A410-01 5 74706863 74706863 T - COL4A3BP Frame_Shift_Del p.K429Nfs*16 0.36 TCGA-EA-A410-01 5 74962641 74962641 C A ANKDD1B Missense_Mutation p.P406T 0.43 tolerated(0.25) benign(0.122) TCGA-EA-A410-01 5 76640708 76640708 T A PDE8B Missense_Mutation p.D276E 0.41 tolerated(1) benign(0.002) TCGA-EA-A410-01 5 77772628 77772629 AA - SCAMP1 3'UTR 0.53 TCGA-EA-A410-01 5 78181573 78181573 C T ARSB Missense_Mutation p.V326I 0.22 tolerated(0.81) benign(0.005) TCGA-EA-A410-01 5 7867109 7867109 C T FASTKD3 Missense_Mutation p.C363Y 0.40 tolerated(0.25) benign(0.092) TCGA-EA-A410-01 5 79852666 79852666 T C ANKRD34B 3'UTR 0.35 TCGA-EA-A410-01 5 79970915 79970915 A - MSH3 Frame_Shift_Del p.K383Rfs*32 0.34 TCGA-EA-A410-01 5 82937410 82937410 G A HAPLN1 Missense_Mutation p.R324C 0.48 deleterious(0) probably_damaging(0.979) TCGA-EA-A410-01 5 86564686 86564686 C - RASA1 Frame_Shift_Del p.P141Lfs*33 0.23 TCGA-EA-A410-01 5 89820956 89820956 G A LYSMD3 Nonsense_Mutation p.R51* 0.42 TCGA-EA-A410-01 5 9042032 9042032 A - SEMA5A 3'UTR 0.33 TCGA-EA-A410-01 6 100896040 100896040 G A SIM1 Missense_Mutation p.R278C 0.48 deleterious(0.01) possibly_damaging(0.863) TCGA-EA-A410-01 6 105176924 105176924 G A HACE1 3'UTR 0.31 TCGA-EA-A410-01 6 105544771 105544772 - A BVES 3'UTR 0.25 TCGA-EA-A410-01 6 107954918 107954918 C T SOBP Silent p.T290T 0.41 TCGA-EA-A410-01 6 108985139 108985139 G A FOXO3 Missense_Mutation p.R368Q 0.27 deleterious(0.02) benign(0.087) TCGA-EA-A410-01 6 109283270 109283270 C T ARMC2 Missense_Mutation p.R698C 0.35 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 6 109629292 109629292 C A Y_RNA 3'Flank 0.45 TCGA-EA-A410-01 6 109762607 109762607 T C SMPD2 Missense_Mutation p.L33P 0.38 deleterious(0) probably_damaging(0.99) TCGA-EA-A410-01 6 109802463 109802463 C T ZBTB24 Missense_Mutation p.R256Q 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A410-01 6 109837060 109837060 C A AK9 Missense_Mutation p.K1355N 0.36 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 6 110935658 110935658 T - CDK19 3'UTR 0.33 TCGA-EA-A410-01 6 114182766 114182766 G A MARCKS 3'UTR 0.11 TCGA-EA-A410-01 6 116600691 116600691 G A TSPYL1 Silent p.G101G 0.28 TCGA-EA-A410-01 6 117869426 117869426 G A DCBLD1 Intron 0.38 TCGA-EA-A410-01 6 128302313 128302313 A - PTPRK Frame_Shift_Del p.L1226* 0.33 TCGA-EA-A410-01 6 129468114 129468114 C T LAMA2 Missense_Mutation p.S277L 0.35 deleterious(0) probably_damaging(0.982) TCGA-EA-A410-01 6 132270093 132270093 C A CTGF 3'UTR 0.44 TCGA-EA-A410-01 6 132938568 132938568 T - TAAR2 Frame_Shift_Del p.A260Lfs*5 0.30 TCGA-EA-A410-01 6 134491990 134491992 TCT - SGK1 In_Frame_Del p.K462del 0.29 TCGA-EA-A410-01 6 136512951 136512951 C T PDE7B Silent p.S442S 0.36 TCGA-EA-A410-01 6 136599059 136599059 C T BCLAF1 Silent p.S320S 0.20 TCGA-EA-A410-01 6 139487874 139487874 G A HECA Missense_Mutation p.R242Q 0.27 tolerated(0.07) probably_damaging(0.99) TCGA-EA-A410-01 6 139488308 139488308 G A HECA Missense_Mutation p.A387T 0.45 tolerated(0.6) probably_damaging(0.996) TCGA-EA-A410-01 6 143094418 143094418 G A HIVEP2 Silent p.D486D 0.29 TCGA-EA-A410-01 6 146264759 146264759 T - SHPRH Frame_Shift_Del p.G587Efs*23 0.33 TCGA-EA-A410-01 6 147680337 147680337 A G STXBP5 Missense_Mutation p.D808G 0.09 deleterious(0.01) benign(0.029) TCGA-EA-A410-01 6 147886488 147886488 T C SAMD5 3'UTR 0.38 TCGA-EA-A410-01 6 149732152 149732152 A - TAB2 3'UTR 0.36 TCGA-EA-A410-01 6 150570332 150570333 - T PPP1R14C 3'UTR 0.48 TCGA-EA-A410-01 6 151121939 151121939 G A PLEKHG1 Silent p.S238S 0.36 TCGA-EA-A410-01 6 151153102 151153102 G A PLEKHG1 Missense_Mutation p.S952N 0.39 tolerated(0.05) benign(0.287) TCGA-EA-A410-01 6 151757536 151757536 C T RMND1 Intron 0.43 TCGA-EA-A410-01 6 152442991 152442991 A - SYNE1 3'UTR 0.49 TCGA-EA-A410-01 6 155154727 155154728 - T SCAF8 3'UTR 0.48 TCGA-EA-A410-01 6 155578991 155578991 G A TFB1M Silent p.D340D 0.24 TCGA-EA-A410-01 6 157405954 157405954 G - ARID1B Frame_Shift_Del p.G734Afs*11 0.30 TCGA-EA-A410-01 6 157522598 157522598 C T ARID1B Nonsense_Mutation p.R1624* 0.21 TCGA-EA-A410-01 6 158492661 158492661 G A SYNJ2 Silent p.T656T 0.12 TCGA-EA-A410-01 6 158538788 158538788 G A SERAC1 Silent p.S458S 0.37 TCGA-EA-A410-01 6 159670117 159670117 G A FNDC1 Silent p.S1579S 0.41 TCGA-EA-A410-01 6 160169514 160169514 A - WTAP Intron 0.38 TCGA-EA-A410-01 6 16145189 16145189 G A MYLIP Missense_Mutation p.A297T 0.19 tolerated(0.07) benign(0.1) TCGA-EA-A410-01 6 161470763 161470763 C T MAP3K4 Missense_Mutation p.R487W 0.55 tolerated(0.08) possibly_damaging(0.462) TCGA-EA-A410-01 6 162394339 162394339 G A PARK2 Silent p.D243D 0.36 TCGA-EA-A410-01 6 163987695 163987695 T - QKI Intron 0.29 TCGA-EA-A410-01 6 166580091 166580091 C T T Missense_Mutation p.G154R 0.35 deleterious(0) probably_damaging(0.974) TCGA-EA-A410-01 6 166824012 166824012 T G RPS6KA2 3'Flank 0.40 TCGA-EA-A410-01 6 167343162 167343162 C T RNASET2 Missense_Mutation p.A229T 0.34 tolerated(0.41) benign(0.012) TCGA-EA-A410-01 6 167738575 167738575 G A TTLL2 5'UTR 0.29 TCGA-EA-A410-01 6 168396402 168396402 G C KIF25 5'Flank 0.50 TCGA-EA-A410-01 6 17764622 17764622 C T KIF13A Missense_Mutation p.A1713T 0.40 tolerated_low_confidence(0.29) benign(0.002) TCGA-EA-A410-01 6 18465287 18465287 T C RNF144B Missense_Mutation p.S301P 0.37 tolerated_low_confidence(0.43) benign(0.002) TCGA-EA-A410-01 6 18466953 18466953 G A RNF144B 3'UTR 0.40 TCGA-EA-A410-01 6 21597752 21597752 T C SOX4 3'UTR 0.39 TCGA-EA-A410-01 6 25450164 25450164 G A LRRC16A Missense_Mutation p.R137H 0.35 deleterious(0.01) possibly_damaging(0.708) TCGA-EA-A410-01 6 25972162 25972162 T C TRIM38 Silent p.H191H 0.23 TCGA-EA-A410-01 6 26200161 26200164 TAAG - HIST1H2BF Frame_Shift_Del p.K126N 0.47 TCGA-EA-A410-01 6 26408147 26408147 G A BTN3A1 Missense_Mutation p.G228S 0.51 tolerated(0.33) benign(0.037) TCGA-EA-A410-01 6 27369014 27369014 A C ZNF391 Missense_Mutation p.S289R 0.29 tolerated(0.34) benign(0.011) TCGA-EA-A410-01 6 2890469 2890469 G A SERPINB9 Silent p.H353H 0.32 TCGA-EA-A410-01 6 2948535 2948535 C T SERPINB6 Silent p.P376P 0.45 TCGA-EA-A410-01 6 29555724 29555724 G T OR2H2 Translation_Start_Site p.M1? 0.29 tolerated(0.16) probably_damaging(0.985) TCGA-EA-A410-01 6 30105127 30105127 T C TRIM40 Missense_Mutation p.L105P 0.42 tolerated(0.15) benign(0.14) TCGA-EA-A410-01 6 30530230 30530230 C A PRR3 Silent p.L175L 0.49 TCGA-EA-A410-01 6 31127311 31127311 A - TCF19 Frame_Shift_Del p.H22Pfs*75 0.10 TCGA-EA-A410-01 6 31729722 31729722 G A MSH5 Missense_Mutation p.R771H 0.47 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 6 31797643 31797643 A G HSPA1B Missense_Mutation p.E639G 0.31 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-EA-A410-01 6 32118205 32118205 G A PRRT1 Silent p.P166P 0.52 TCGA-EA-A410-01 6 32155496 32155496 G A PBX2 Silent p.H266H 0.43 TCGA-EA-A410-01 6 32796598 32796598 G T TAP2 Intron 0.30 TCGA-EA-A410-01 6 32974464 32974464 A - HLA-DOA 3'UTR 0.41 TCGA-EA-A410-01 6 33179104 33179104 G - RING1 Frame_Shift_Del p.S211Afs*3 0.42 TCGA-EA-A410-01 6 33554273 33554273 G A GGNBP1 Intron 0.23 TCGA-EA-A410-01 6 33639877 33639877 T A ITPR3 Missense_Mutation p.S934T 0.35 tolerated(0.35) benign(0.003) TCGA-EA-A410-01 6 33643546 33643546 C T ITPR3 Silent p.H1065H 0.30 TCGA-EA-A410-01 6 35263626 35263626 G T ZNF76 3'UTR 0.35 TCGA-EA-A410-01 6 35442746 35442747 - C TEAD3 3'UTR 0.30 TCGA-EA-A410-01 6 36181729 36181729 C - BRPF3 Frame_Shift_Del p.P854Rfs*6 0.35 TCGA-EA-A410-01 6 36457017 36457017 C T KCTD20 3'UTR 0.53 TCGA-EA-A410-01 6 36652158 36652158 C T CDKN1A Missense_Mutation p.R94W 0.48 tolerated(0.11) benign(0.003) TCGA-EA-A410-01 6 37142740 37142740 G A PIM1 3'UTR 0.38 TCGA-EA-A410-01 6 38122150 38122150 G - ZFAND3 3'UTR 0.38 TCGA-EA-A410-01 6 38142862 38142862 C T BTBD9 Missense_Mutation p.G580S 0.31 tolerated_low_confidence(1) benign(0) TCGA-EA-A410-01 6 38831663 38831663 G T DNAH8 Missense_Mutation p.G1892C 0.37 probably_damaging(1) TCGA-EA-A410-01 6 39282934 39282934 G A KCNK16 Missense_Mutation p.A312V 0.32 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-EA-A410-01 6 39563885 39563885 C T KIF6 Missense_Mutation p.G264D 0.43 deleterious(0.02) probably_damaging(0.989) TCGA-EA-A410-01 6 39846355 39846355 T C DAAM2 Silent p.S512S 0.44 TCGA-EA-A410-01 6 398927 398927 C T IRF4 Missense_Mutation p.A246V 0.48 tolerated(0.09) benign(0.063) TCGA-EA-A410-01 6 40347047 40347047 A G TDRG1 RNA 0.35 TCGA-EA-A410-01 6 41011932 41011932 G A TSPO2 3'UTR 0.45 TCGA-EA-A410-01 6 41117394 41117394 G A TREML1 Missense_Mutation p.T295I 0.51 tolerated(0.05) benign(0.001) TCGA-EA-A410-01 6 4130900 4130900 G A C6orf201 3'UTR 0.51 TCGA-EA-A410-01 6 41562610 41562610 C T FOXP4 Silent p.N513N 0.41 TCGA-EA-A410-01 6 41704687 41704687 C T PGC Missense_Mutation p.G357D 0.52 deleterious(0.03) benign(0.216) TCGA-EA-A410-01 6 41903831 41903831 G T CCND3 Silent p.A242A 0.39 TCGA-EA-A410-01 6 42147254 42147254 G A GUCA1A 3'UTR 0.39 TCGA-EA-A410-01 6 42200555 42200555 C T TRERF1 Missense_Mutation p.G1048S 0.09 tolerated(0.75) benign(0) TCGA-EA-A410-01 6 42666059 42666059 C T PRPH2 Missense_Mutation p.A339T 0.50 tolerated(0.07) benign(0.006) TCGA-EA-A410-01 6 42975709 42975709 C T PPP2R5D Missense_Mutation p.R255W 0.37 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 6 43010843 43010843 G A CUL7 Missense_Mutation p.T1228M 0.39 deleterious(0.02) benign(0.202) TCGA-EA-A410-01 6 43039985 43039985 C T KLC4 Missense_Mutation p.R512W 0.44 deleterious(0.02) benign(0.003) TCGA-EA-A410-01 6 43171633 43171633 G A CUL9 Missense_Mutation p.R1356H 0.38 tolerated(0.07) possibly_damaging(0.459) TCGA-EA-A410-01 6 43230856 43230856 G A TTBK1 Missense_Mutation p.R585Q 0.41 possibly_damaging(0.738) TCGA-EA-A410-01 6 43592282 43592282 G A GTPBP2 Silent p.A355A 0.35 TCGA-EA-A410-01 6 44107311 44107311 T A TMEM63B Missense_Mutation p.I172N 0.41 deleterious(0) benign(0.305) TCGA-EA-A410-01 6 44116308 44116308 C T TMEM63B Missense_Mutation p.R394C 0.42 deleterious(0.01) benign(0.011) TCGA-EA-A410-01 6 46801039 46801039 G A MEP1A Missense_Mutation p.R458Q 0.38 tolerated(0.05) probably_damaging(0.975) TCGA-EA-A410-01 6 47682491 47682491 G A GPR115 Missense_Mutation p.V504I 0.30 tolerated(0.96) benign(0.097) TCGA-EA-A410-01 6 49459995 49459995 T - CENPQ 3'UTR 0.50 TCGA-EA-A410-01 6 50814901 50814901 A - TFAP2B 3'UTR 0.32 TCGA-EA-A410-01 6 51524089 51524089 G A PKHD1 Missense_Mutation p.A3612V 0.31 deleterious(0.05) benign(0.06) TCGA-EA-A410-01 6 56501427 56501427 C T DST Silent p.T459T 0.29 TCGA-EA-A410-01 6 70992719 70992719 G A COL9A1 Intron 0.08 TCGA-EA-A410-01 6 71570124 71570124 T - SMAP1 3'UTR 0.48 TCGA-EA-A410-01 6 72678706 72678706 C T RIMS1 Missense_Mutation p.A62V 0.47 tolerated(0.27) benign(0.002) TCGA-EA-A410-01 6 7583049 7583049 C T DSP Missense_Mutation p.R1852C 0.34 possibly_damaging(0.77) TCGA-EA-A410-01 6 75904549 75904549 G A COL12A1 Missense_Mutation p.T63M 0.35 possibly_damaging(0.696) TCGA-EA-A410-01 6 7602865 7602865 G A SNRNP48 Missense_Mutation p.R202Q 0.56 tolerated(1) benign(0.001) TCGA-EA-A410-01 6 84884585 84884585 G A KIAA1009 Missense_Mutation p.A629V 0.35 deleterious(0.01) possibly_damaging(0.903) TCGA-EA-A410-01 6 86324782 86324782 C T SYNCRIP Missense_Mutation p.G522S 0.46 tolerated(0.12) unknown(0) TCGA-EA-A410-01 6 89974287 89974287 G A GABRR2 Silent p.G310G 0.40 TCGA-EA-A410-01 6 90434986 90434986 G A MDN1 Nonsense_Mutation p.Q1868* 0.37 TCGA-EA-A410-01 6 94129217 94129218 - C EPHA7 5'UTR 0.32 TCGA-EA-A410-01 6 99322299 99322299 G A FBXL4 Missense_Mutation p.P574L 0.40 tolerated(0.06) possibly_damaging(0.755) TCGA-EA-A410-01 7 100204202 100204202 C - PCOLCE Frame_Shift_Del p.K299Sfs*41 0.34 TCGA-EA-A410-01 7 100305049 100305049 T C POP7 3'UTR 0.31 TCGA-EA-A410-01 7 101893285 101893285 G T CUX1 3'UTR 0.11 TCGA-EA-A410-01 7 107167783 107167783 C T COG5 Missense_Mutation p.R177Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-EA-A410-01 7 107214211 107214211 C T DUS4L Missense_Mutation p.R101C 0.30 tolerated(0.13) benign(0) TCGA-EA-A410-01 7 107398713 107398713 G A CBLL1 Missense_Mutation p.R189H 0.27 tolerated(0.07) probably_damaging(0.991) TCGA-EA-A410-01 7 107400108 107400110 ATA - CBLL1 3'UTR 0.39 TCGA-EA-A410-01 7 107602023 107602023 G A LAMB1 Silent p.N652N 0.56 TCGA-EA-A410-01 7 112460005 112460005 T - C7orf60 3'UTR 0.50 TCGA-EA-A410-01 7 1132546 1132546 C A GPER1 3'UTR 0.47 TCGA-EA-A410-01 7 114284881 114284881 C T FOXP2 Intron 0.27 TCGA-EA-A410-01 7 116166539 116166539 G A CAV1 Intron 0.54 TCGA-EA-A410-01 7 116546326 116546326 A - CAPZA2 Frame_Shift_Del p.I148* 0.33 TCGA-EA-A410-01 7 117251699 117251699 C T CFTR Silent p.F1068F 0.43 TCGA-EA-A410-01 7 121965603 121965603 G A CADPS2 Silent p.C1215C 0.40 TCGA-EA-A410-01 7 12409698 12409698 T A VWDE Missense_Mutation p.N745I 0.41 tolerated(0.18) benign(0.074) TCGA-EA-A410-01 7 127231636 127231636 T - ARF5 3'UTR 0.39 TCGA-EA-A410-01 7 127235421 127235421 G A FSCN3 Missense_Mutation p.V69M 0.40 tolerated(0.25) benign(0.243) TCGA-EA-A410-01 7 127236037 127236037 G A FSCN3 Missense_Mutation p.R274Q 0.45 deleterious(0.01) benign(0.36) TCGA-EA-A410-01 7 127668232 127668233 - T LRRC4 3'UTR 0.33 TCGA-EA-A410-01 7 128035044 128035044 G A IMPDH1 Silent p.G483G 0.48 TCGA-EA-A410-01 7 128035272 128035272 G A IMPDH1 Missense_Mutation p.R440W 0.37 deleterious(0.02) benign(0.271) TCGA-EA-A410-01 7 128475392 128475392 T C FLNC Missense_Mutation p.I122T 0.38 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 7 128525272 128525272 G - KCP RNA 0.31 TCGA-EA-A410-01 7 128845550 128845550 G T SMO Missense_Mutation p.A283S 0.28 deleterious(0.02) possibly_damaging(0.854) TCGA-EA-A410-01 7 129067524 129067524 T C AHCYL2 3'UTR 0.31 TCGA-EA-A410-01 7 129351340 129351340 C T NRF1 Missense_Mutation p.T330I 0.35 deleterious(0.01) benign(0.154) TCGA-EA-A410-01 7 131185933 131185934 - T PODXL 3'Flank 0.34 TCGA-EA-A410-01 7 131864561 131864561 G A PLXNA4 Silent p.I1253I 0.41 TCGA-EA-A410-01 7 131870086 131870086 G A PLXNA4 Missense_Mutation p.R1044W 0.25 deleterious(0) probably_damaging(0.98) TCGA-EA-A410-01 7 134891943 134891943 T C WDR91 Missense_Mutation p.I175V 0.39 deleterious(0.04) benign(0.06) TCGA-EA-A410-01 7 136555124 136555124 C T CHRM2 Intron 0.30 TCGA-EA-A410-01 7 138279229 138279229 A T SVOPL 3'Flank 0.43 TCGA-EA-A410-01 7 138602902 138602902 G A KIAA1549 Silent p.I490I 0.22 TCGA-EA-A410-01 7 139416476 139416476 C T HIPK2 Missense_Mutation p.V120M 0.35 tolerated(0.08) possibly_damaging(0.763) TCGA-EA-A410-01 7 141943198 141943198 G - MOXD2P RNA 0.28 TCGA-EA-A410-01 7 142028598 142028598 C T TRBV6-1 Missense_Mutation p.A111V 0.36 deleterious(0) probably_damaging(0.99) TCGA-EA-A410-01 7 142563953 142563953 G - EPHB6 Frame_Shift_Del p.G449Dfs*10 0.38 TCGA-EA-A410-01 7 148709358 148709358 C T PDIA4 Missense_Mutation p.A237T 0.47 deleterious(0) probably_damaging(0.985) TCGA-EA-A410-01 7 1487374 1487374 G A MICALL2 Missense_Mutation p.A121V 0.42 deleterious(0) benign(0.232) TCGA-EA-A410-01 7 149430475 149430475 C T KRBA1 Missense_Mutation p.A810V 0.52 deleterious(0.01) probably_damaging(0.972) TCGA-EA-A410-01 7 149501110 149501110 G - SSPO RNA 0.39 TCGA-EA-A410-01 7 149558306 149558306 G A ZNF862 Missense_Mutation p.R686Q 0.42 tolerated(0.33) benign(0.147) TCGA-EA-A410-01 7 149558861 149558861 C T ZNF862 Missense_Mutation p.T871M 0.38 deleterious(0.03) benign(0.077) TCGA-EA-A410-01 7 150028576 150028576 T - ZBED6CL 3'UTR 0.29 TCGA-EA-A410-01 7 150721271 150721271 C - ATG9B Frame_Shift_Del p.T81Qfs*25 0.32 TCGA-EA-A410-01 7 151832597 151832597 T - KMT2C 3'UTR 0.59 TCGA-EA-A410-01 7 152552027 152552027 G A ACTR3B 3'UTR 0.43 TCGA-EA-A410-01 7 155255310 155255310 C T EN2 Silent p.A310A 0.36 TCGA-EA-A410-01 7 156976656 156976656 C T UBE3C Missense_Mutation p.A359V 0.44 tolerated(0.22) benign(0.001) TCGA-EA-A410-01 7 16913405 16913405 T - AGR3 Frame_Shift_Del p.S58Vfs*5 0.43 TCGA-EA-A410-01 7 1997329 1997329 C T MAD1L1 Missense_Mutation p.E511K 0.43 tolerated(0.09) possibly_damaging(0.622) TCGA-EA-A410-01 7 20198469 20198471 AGG - MACC1 In_Frame_Del p.P505del 0.35 TCGA-EA-A410-01 7 21551476 21551476 T C SP4 3'UTR 0.18 TCGA-EA-A410-01 7 21941187 21941188 AA - DNAH11 3'UTR 0.37 TCGA-EA-A410-01 7 26224226 26224226 T C NFE2L3 Missense_Mutation p.V303A 0.36 tolerated(0.17) benign(0.007) TCGA-EA-A410-01 7 27185488 27185488 C T HOXA6 Missense_Mutation p.R164H 0.38 deleterious(0) probably_damaging(0.991) TCGA-EA-A410-01 7 2740187 2740187 C T AMZ1 Silent p.S34S 0.31 TCGA-EA-A410-01 7 29111459 29111459 T - CPVL Frame_Shift_Del p.K265Sfs*11 0.37 TCGA-EA-A410-01 7 30951512 30951512 G A AQP1 5'UTR 0.50 TCGA-EA-A410-01 7 4308342 4308342 C T SDK1 3'UTR 0.49 TCGA-EA-A410-01 7 44099036 44099036 A C DBNL Silent p.R316R 0.36 TCGA-EA-A410-01 7 44102407 44102407 G A PGAM2 Missense_Mutation p.R240W 0.42 deleterious(0) possibly_damaging(0.848) TCGA-EA-A410-01 7 44151857 44151857 C - AEBP1 Frame_Shift_Del p.Y720Tfs*43 0.37 TCGA-EA-A410-01 7 44156834 44156834 G A POLD2 Missense_Mutation p.A160V 0.33 deleterious(0) probably_damaging(0.991) TCGA-EA-A410-01 7 44684936 44684936 T - OGDH Frame_Shift_Del p.R81Afs*19 0.31 TCGA-EA-A410-01 7 44746839 44746839 G A OGDH Missense_Mutation p.R883Q 0.35 deleterious(0.03) probably_damaging(0.99) TCGA-EA-A410-01 7 45005249 45005249 C T MYO1G Missense_Mutation p.A790T 0.36 tolerated(0.6) benign(0.033) TCGA-EA-A410-01 7 45015237 45015237 A G MYO1G Missense_Mutation p.V137A 0.54 deleterious(0.01) possibly_damaging(0.454) TCGA-EA-A410-01 7 45776469 45776469 G A SEPT7P2 RNA 0.40 TCGA-EA-A410-01 7 4722457 4722457 C T FOXK1 Missense_Mutation p.A173V 0.46 tolerated(1) benign(0.01) TCGA-EA-A410-01 7 47969108 47969108 C T PKD1L1 Silent p.P251P 0.47 TCGA-EA-A410-01 7 4810829 4810829 C T FOXK1 3'UTR 0.46 TCGA-EA-A410-01 7 50467632 50467632 C T IKZF1 Silent p.S247S 0.26 TCGA-EA-A410-01 7 53103948 53103948 C T POM121L12 Missense_Mutation p.P195L 0.36 deleterious(0) probably_damaging(0.96) TCGA-EA-A410-01 7 540802 540802 G A PDGFA Silent p.C177C 0.43 TCGA-EA-A410-01 7 5417650 5417650 C T TNRC18 Missense_Mutation p.G720S 0.61 benign(0.014) TCGA-EA-A410-01 7 55221830 55221830 G A EGFR Missense_Mutation p.V292M 0.37 deleterious(0) probably_damaging(0.989) TCGA-EA-A410-01 7 55466205 55466205 C T LANCL2 Missense_Mutation p.R138W 0.39 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 7 6193591 6193591 G A USP42 Silent p.P802P 0.39 TCGA-EA-A410-01 7 64437173 64437173 T A ZNF117 3'UTR 0.30 TCGA-EA-A410-01 7 65439666 65439666 G A GUSB Missense_Mutation p.P364L 0.38 deleterious(0.02) benign(0.2) TCGA-EA-A410-01 7 65617889 65617889 C A CRCP 3'UTR 0.39 TCGA-EA-A410-01 7 66237064 66237064 C T RABGEF1 Nonsense_Mutation p.R60* 0.43 TCGA-EA-A410-01 7 6859541 6859541 T C CCZ1B Missense_Mutation p.D185G 0.72 deleterious(0.01) probably_damaging(0.978) TCGA-EA-A410-01 7 716926 716926 G A PRKAR1B Missense_Mutation p.A127V 0.42 tolerated(0.06) possibly_damaging(0.484) TCGA-EA-A410-01 7 72419904 72419904 C T POM121 3'UTR 0.42 TCGA-EA-A410-01 7 73118670 73118670 G A STX1A Intron 0.39 TCGA-EA-A410-01 7 73150487 73150487 C T ABHD11 3'UTR 0.43 TCGA-EA-A410-01 7 73152988 73152988 C - ABHD11 Frame_Shift_Del p.G47Afs*52 0.36 TCGA-EA-A410-01 7 77584360 77584361 - T PHTF2 3'UTR 0.41 TCGA-EA-A410-01 7 77646724 77646724 T - MAGI2 3'UTR 0.41 TCGA-EA-A410-01 7 8178637 8178637 G A ICA1 Silent p.G332G 0.34 TCGA-EA-A410-01 7 82580449 82580449 G A PCLO Missense_Mutation p.T3152M 0.32 unknown(0) TCGA-EA-A410-01 7 82582944 82582944 T - PCLO Frame_Shift_Del p.K2442Sfs*2 0.31 TCGA-EA-A410-01 7 87011727 87011727 A G CROT Splice_Site p.X419_splice 0.43 TCGA-EA-A410-01 7 87835564 87835564 G A SRI 3'UTR 0.50 TCGA-EA-A410-01 7 89789177 89789177 C T STEAP1 Silent p.D25D 0.28 TCGA-EA-A410-01 7 91622347 91622347 A G AKAP9 Missense_Mutation p.Y185C 0.12 benign(0.008) TCGA-EA-A410-01 7 95214845 95214845 G A PDK4 3'UTR 0.39 TCGA-EA-A410-01 7 97823555 97823555 G A LMTK2 Missense_Mutation p.D1260N 0.65 deleterious(0.01) probably_damaging(1) TCGA-EA-A410-01 7 97842215 97842215 C T BHLHA15 3'UTR 0.24 TCGA-EA-A410-01 7 98551048 98551048 G A TRRAP Missense_Mutation p.V1901I 0.24 possibly_damaging(0.84) TCGA-EA-A410-01 7 98564779 98564779 T C TRRAP Missense_Mutation p.V2424A 0.32 benign(0.164) TCGA-EA-A410-01 7 99161578 99161578 A G ZNF655 Intron 0.35 TCGA-EA-A410-01 7 99707626 99707626 G T TAF6 Missense_Mutation p.P447H 0.37 deleterious(0.01) possibly_damaging(0.808) TCGA-EA-A410-01 7 99912294 99912294 T C SPDYE3 Silent p.C374C 0.25 TCGA-EA-A410-01 7 99971860 99971860 G A PILRA Silent p.P86P 0.43 TCGA-EA-A410-01 8 100587893 100587893 C T VPS13B Missense_Mutation p.R1678W 0.29 deleterious(0) probably_damaging(0.973) TCGA-EA-A410-01 8 100871603 100871603 G A VPS13B Missense_Mutation p.A3672T 0.27 deleterious(0.02) possibly_damaging(0.499) TCGA-EA-A410-01 8 100883724 100883724 C T VPS13B Silent p.D3873D 0.38 TCGA-EA-A410-01 8 100887665 100887665 G A VPS13B Missense_Mutation p.R3947K 0.40 tolerated(0.13) benign(0.067) TCGA-EA-A410-01 8 103220287 103220287 T A RRM2B 3'UTR 0.46 TCGA-EA-A410-01 8 104337547 104337547 C T FZD6 Missense_Mutation p.R405W 0.41 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 8 10470757 10470757 G - RP1L1 Frame_Shift_Del p.P284Rfs*26 0.37 TCGA-EA-A410-01 8 105503574 105503574 C A LRP12 Missense_Mutation p.R636I 0.30 tolerated(0.22) possibly_damaging(0.649) TCGA-EA-A410-01 8 10581361 10581362 - A SOX7 3'UTR 0.23 TCGA-EA-A410-01 8 10753744 10753744 A - XKR6 3'Flank 0.25 TCGA-EA-A410-01 8 110587412 110587412 C T SYBU Missense_Mutation p.R572H 0.35 tolerated(0.18) benign(0.005) TCGA-EA-A410-01 8 116424773 116424773 T - TRPS1 3'UTR 0.42 TCGA-EA-A410-01 8 116617112 116617112 C T TRPS1 Missense_Mutation p.E362K 0.29 deleterious_low_confidence(0) possibly_damaging(0.729) TCGA-EA-A410-01 8 117858533 117858533 T - RAD21 3'UTR 0.46 TCGA-EA-A410-01 8 124361640 124361640 C T ATAD2 Missense_Mutation p.S564N 0.36 tolerated(0.42) benign(0.123) TCGA-EA-A410-01 8 124707762 124707762 T - ANXA13 Frame_Shift_Del p.I192Sfs*20 0.43 TCGA-EA-A410-01 8 125564841 125564841 A - MTSS1 3'UTR 0.29 TCGA-EA-A410-01 8 12579725 12579725 T - LONRF1 3'UTR 0.39 TCGA-EA-A410-01 8 131064870 131064870 A - ASAP1 3'UTR 0.43 TCGA-EA-A410-01 8 132962248 132962248 A C EFR3A Silent p.T133T 0.40 TCGA-EA-A410-01 8 132980594 132980594 G A EFR3A Missense_Mutation p.R303H 0.32 tolerated(0.3) benign(0.001) TCGA-EA-A410-01 8 133150233 133150233 T - KCNQ3 Frame_Shift_Del p.K533Nfs*6 0.38 TCGA-EA-A410-01 8 136659390 136659390 T - KHDRBS3 3'UTR 0.29 TCGA-EA-A410-01 8 139144859 139144859 C T FAM135B Missense_Mutation p.A1400T 0.34 deleterious(0.05) benign(0.259) TCGA-EA-A410-01 8 143558803 143558803 G A BAI1 Missense_Mutation p.R427H 0.39 deleterious(0) possibly_damaging(0.812) TCGA-EA-A410-01 8 144681784 144681784 G A TIGD5 Missense_Mutation p.G571R 0.38 tolerated(0.57) benign(0.002) TCGA-EA-A410-01 8 144687941 144687941 C T PYCRL Missense_Mutation p.G264R 0.41 deleterious(0.03) possibly_damaging(0.874) TCGA-EA-A410-01 8 144940246 144940246 G A EPPK1 Silent p.H2392H 0.11 TCGA-EA-A410-01 8 144991574 144991574 G A PLEC Missense_Mutation p.R4276C 0.37 probably_damaging(0.999) TCGA-EA-A410-01 8 145101709 145101709 C T SPATC1 Missense_Mutation p.A543V 0.48 tolerated(0.07) benign(0.046) TCGA-EA-A410-01 8 145268029 145268029 C T MROH1 Intron 0.56 TCGA-EA-A410-01 8 145608325 145608325 G A ADCK5 Missense_Mutation p.A54T 0.52 tolerated(1) benign(0.001) TCGA-EA-A410-01 8 145625874 145625874 G A CPSF1 Missense_Mutation p.R234W 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-EA-A410-01 8 145661150 145661150 G A TONSL Missense_Mutation p.A889V 0.40 tolerated(0.41) benign(0.003) TCGA-EA-A410-01 8 146033723 146033723 C T ZNF517 Silent p.H474H 0.36 TCGA-EA-A410-01 8 18080828 18080828 A - NAT1 3'UTR 0.30 TCGA-EA-A410-01 8 18490296 18490296 T - PSD3 Frame_Shift_Del p.K746Sfs*73 0.38 TCGA-EA-A410-01 8 196379 196379 C T ZNF596 3'UTR 0.41 TCGA-EA-A410-01 8 20107165 20107165 G - LZTS1 3'UTR 0.50 TCGA-EA-A410-01 8 20110732 20110732 C T LZTS1 Missense_Mutation p.S237N 0.46 tolerated(0.23) benign(0.017) TCGA-EA-A410-01 8 21997004 21997004 G A REEP4 Silent p.S114S 0.32 TCGA-EA-A410-01 8 22054780 22054780 C T BMP1 Missense_Mutation p.R652C 0.34 deleterious(0.05) possibly_damaging(0.481) TCGA-EA-A410-01 8 22064885 22064885 C T BMP1 Nonsense_Mutation p.R811* 0.52 TCGA-EA-A410-01 8 22547522 22547522 G A EGR3 3'UTR 0.43 TCGA-EA-A410-01 8 22547613 22547613 A G EGR3 3'UTR 0.50 TCGA-EA-A410-01 8 22582428 22582428 G A PEBP4 Missense_Mutation p.R149C 0.42 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 8 22877618 22877618 G - RHOBTB2 3'Flank 0.21 TCGA-EA-A410-01 8 23428860 23428860 G A SLC25A37 Missense_Mutation p.R170H 0.26 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 8 24811217 24811217 C T CTD-2168K21.2 5'Flank 0.36 TCGA-EA-A410-01 8 25161874 25161874 T G DOCK5 Intron 0.36 TCGA-EA-A410-01 8 26268120 26268120 T - BNIP3L 3'UTR 0.53 TCGA-EA-A410-01 8 27145527 27145527 G A TRIM35 Missense_Mutation p.S341L 0.44 tolerated(0.16) probably_damaging(0.991) TCGA-EA-A410-01 8 27145579 27145579 C T TRIM35 Missense_Mutation p.V324I 0.46 tolerated(0.15) benign(0.322) TCGA-EA-A410-01 8 27296838 27296838 G A PTK2B Missense_Mutation p.R586H 0.53 deleterious(0) benign(0.232) TCGA-EA-A410-01 8 27321275 27321275 C T CHRNA2 Missense_Mutation p.G229S 0.42 tolerated(0.13) probably_damaging(1) TCGA-EA-A410-01 8 27995360 27995360 G A ELP3 Missense_Mutation p.R351Q 0.43 tolerated(0.15) benign(0.031) TCGA-EA-A410-01 8 28378186 28378186 C T FZD3 Missense_Mutation p.S74F 0.32 deleterious(0.01) benign(0.098) TCGA-EA-A410-01 8 28574279 28574279 G A EXTL3 Missense_Mutation p.A235T 0.37 deleterious(0) probably_damaging(0.988) TCGA-EA-A410-01 8 28610158 28610158 G A EXTL3 3'UTR 0.52 TCGA-EA-A410-01 8 2976038 2976038 C T CSMD1 Missense_Mutation p.V2105M 0.47 probably_damaging(0.948) TCGA-EA-A410-01 8 30610592 30610592 A - UBXN8 RNA 0.20 TCGA-EA-A410-01 8 32579405 32579405 T - NRG1 Intron 0.36 TCGA-EA-A410-01 8 33370051 33370051 T A TTI2 Silent p.G27G 0.38 TCGA-EA-A410-01 8 37593487 37593488 AA - RP11-863K10.7 Frame_Shift_Del p.L178Pfs*2 0.42 TCGA-EA-A410-01 8 37607318 37607318 C T ERLIN2 Missense_Mutation p.R169W 0.56 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 8 37701261 37701261 A - BRF2 3'UTR 0.32 TCGA-EA-A410-01 8 37702623 37702623 C T BRF2 Nonsense_Mutation p.W215* 0.33 TCGA-EA-A410-01 8 39007371 39007371 C - ADAM32 Frame_Shift_Del p.T113Sfs*5 0.27 TCGA-EA-A410-01 8 39525553 39525553 G A ADAM18 Missense_Mutation p.D455N 0.32 deleterious(0.04) possibly_damaging(0.705) TCGA-EA-A410-01 8 41552202 41552202 C T ANK1 Missense_Mutation p.E1120K 0.32 tolerated(0.06) benign(0.213) TCGA-EA-A410-01 8 42045509 42045509 G A PLAT Silent p.N93N 0.35 TCGA-EA-A410-01 8 42692824 42692825 - A THAP1 3'UTR 0.46 TCGA-EA-A410-01 8 42752312 42752312 G A HOOK3 Missense_Mutation p.C13Y 0.29 deleterious(0) possibly_damaging(0.454) TCGA-EA-A410-01 8 53536221 53536221 A T RB1CC1 3'UTR 0.56 TCGA-EA-A410-01 8 54791929 54791929 C - RGS20 Frame_Shift_Del p.P94Lfs*54 0.36 TCGA-EA-A410-01 8 54906261 54906261 G A TCEA1 Missense_Mutation p.T96I 0.23 deleterious(0.04) benign(0.048) TCGA-EA-A410-01 8 55372491 55372491 C T SOX17 Missense_Mutation p.A394V 0.20 tolerated(0.17) probably_damaging(0.983) TCGA-EA-A410-01 8 57073710 57073710 A - PLAG1 3'UTR 0.32 TCGA-EA-A410-01 8 57130057 57130057 C T CHCHD7 3'UTR 0.25 TCGA-EA-A410-01 8 61769043 61769043 A G CHD7 Missense_Mutation p.R2402G 0.23 possibly_damaging(0.542) TCGA-EA-A410-01 8 6302639 6302639 A - MCPH1 Frame_Shift_Del p.T468Pfs*32 0.30 TCGA-EA-A410-01 8 6616240 6616240 C T AGPAT5 3'UTR 0.34 TCGA-EA-A410-01 8 6673398 6673398 C T XKR5 RNA 0.38 TCGA-EA-A410-01 8 69030851 69030851 G A PREX2 Silent p.S1131S 0.44 TCGA-EA-A410-01 8 71041151 71041151 G A NCOA2 Missense_Mutation p.A1130V 0.37 deleterious(0.02) benign(0.015) TCGA-EA-A410-01 8 7320276 7320276 T G SPAG11B Missense_Mutation p.H56P 0.19 deleterious(0) probably_damaging(0.951) TCGA-EA-A410-01 8 77617753 77617753 C T ZFHX4 Missense_Mutation p.A477V 0.45 possibly_damaging(0.695) TCGA-EA-A410-01 8 80553610 80553610 C A STMN2 Intron 0.46 TCGA-EA-A410-01 8 80963777 80963777 T - TPD52 Frame_Shift_Del p.K164Sfs*5 0.27 TCGA-EA-A410-01 8 81899644 81899644 C T PAG1 Missense_Mutation p.A79T 0.05 tolerated(0.2) benign(0.353) TCGA-EA-A410-01 8 8560755 8560755 G A CLDN23 Missense_Mutation p.D283N 0.44 tolerated_low_confidence(0.48) benign(0) TCGA-EA-A410-01 8 86127137 86127137 G A C8orf59 Intron 0.39 TCGA-EA-A410-01 8 87229717 87229717 A T SLC7A13 Missense_Mutation p.N387K 0.44 deleterious(0.01) possibly_damaging(0.507) TCGA-EA-A410-01 8 90955596 90955596 T C NBN Splice_Site p.X691_splice 0.31 TCGA-EA-A410-01 8 90967512 90967512 T - NBN Frame_Shift_Del p.R466Gfs*18 0.30 TCGA-EA-A410-01 8 91637884 91637884 C T TMEM64 3'UTR 0.50 TCGA-EA-A410-01 8 92261932 92261932 C - SLC26A7 Frame_Shift_Del p.Q20Sfs*24 0.34 TCGA-EA-A410-01 8 92406454 92406454 T C SLC26A7 Silent p.Y648Y 0.27 TCGA-EA-A410-01 8 9634706 9634707 - T TNKS 3'UTR 0.28 TCGA-EA-A410-01 8 98738218 98738218 G A MTDH 3'UTR 0.40 TCGA-EA-A410-01 9 102627062 102627062 C T NR4A3 3'UTR 0.33 TCGA-EA-A410-01 9 104123681 104123681 T A BAAT 3'UTR 0.35 TCGA-EA-A410-01 9 105765489 105765489 C T CYLC2 Missense_Mutation p.R42W 0.33 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 9 112706320 112706320 G A PALM2 3'Flank 0.33 TCGA-EA-A410-01 9 112934327 112934327 C T PALM2-AKAP2 3'UTR 0.42 TCGA-EA-A410-01 9 113703965 113703965 C T LPAR1 Missense_Mutation p.V177I 0.44 tolerated(1) benign(0.016) TCGA-EA-A410-01 9 114304610 114304610 A C ZNF483 Missense_Mutation p.K465N 0.52 deleterious(0) possibly_damaging(0.461) TCGA-EA-A410-01 9 114695180 114695180 T - UGCG Frame_Shift_Del p.L365Cfs*9 0.31 TCGA-EA-A410-01 9 115930745 115930745 C T FKBP15 Missense_Mutation p.E1193K 0.39 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-EA-A410-01 9 116094252 116094252 C T WDR31 Silent p.S17S 0.46 TCGA-EA-A410-01 9 116191697 116191697 C - C9orf43 3'UTR 0.23 TCGA-EA-A410-01 9 116855700 116855700 G A KIF12 Missense_Mutation p.A355V 0.46 deleterious_low_confidence(0.03) benign(0.013) TCGA-EA-A410-01 9 119737536 119737536 C T ASTN2 Missense_Mutation p.A563T 0.28 deleterious(0) unknown(0) TCGA-EA-A410-01 9 123280707 123280707 G T CDK5RAP2 Missense_Mutation p.R437S 0.42 tolerated(0.14) benign(0.002) TCGA-EA-A410-01 9 123366682 123366682 T - MEGF9 3'UTR 0.29 TCGA-EA-A410-01 9 123920269 123920269 A G CNTRL Missense_Mutation p.K1549R 0.48 benign(0.033) TCGA-EA-A410-01 9 124736325 124736325 G A TTLL11 Missense_Mutation p.R572C 0.48 deleterious(0.02) possibly_damaging(0.721) TCGA-EA-A410-01 9 126150022 126150022 C T DENND1A Intron 0.31 TCGA-EA-A410-01 9 126150110 126150110 C T DENND1A Intron 0.38 TCGA-EA-A410-01 9 127644167 127644167 C T GOLGA1 Missense_Mutation p.A678T 0.32 tolerated(0.32) benign(0.008) TCGA-EA-A410-01 9 128201209 128201209 G A MAPKAP1 Missense_Mutation p.T509M 0.42 tolerated(0.06) probably_damaging(0.985) TCGA-EA-A410-01 9 129184195 129184195 A G MVB12B Missense_Mutation p.E242G 0.34 tolerated(0.11) possibly_damaging(0.457) TCGA-EA-A410-01 9 129645443 129645443 T - ZBTB34 3'UTR 0.47 TCGA-EA-A410-01 9 129646083 129646083 G A ZBTB34 3'UTR 0.40 TCGA-EA-A410-01 9 130496725 130496725 G T TOR2A Silent p.S90S 0.35 TCGA-EA-A410-01 9 130573244 130573244 C T FPGS Silent p.A436A 0.57 TCGA-EA-A410-01 9 131395784 131395784 T C SPTAN1 3'UTR 0.44 TCGA-EA-A410-01 9 131492570 131492570 G A ZER1 3'UTR 0.39 TCGA-EA-A410-01 9 131851743 131851743 G A DOLPP1 3'UTR 0.41 TCGA-EA-A410-01 9 132396440 132396440 C T NTMT1 Silent p.V90V 0.43 TCGA-EA-A410-01 9 132904275 132904275 A G AL360004.1 Missense_Mutation p.F36S 0.45 unknown(0) TCGA-EA-A410-01 9 134014704 134014704 C T NUP214 Nonsense_Mutation p.R348* 0.32 TCGA-EA-A410-01 9 134183331 134183331 C T PPAPDC3 Missense_Mutation p.T158M 0.50 tolerated(0.12) probably_damaging(0.915) TCGA-EA-A410-01 9 135203104 135203104 C T SETX Missense_Mutation p.R1294H 0.44 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 9 136081734 136081734 G A OBP2B Missense_Mutation p.S153L 0.47 tolerated(0.25) benign(0.036) TCGA-EA-A410-01 9 136131644 136131644 C T RP11-430N14.4 5'Flank 0.46 TCGA-EA-A410-01 9 136340135 136340135 G A SLC2A6 Missense_Mutation p.T292M 0.39 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 9 136521644 136521644 G - DBH Splice_Site p.X480_splice 0.39 TCGA-EA-A410-01 9 136597633 136597633 G A SARDH Missense_Mutation p.T141M 0.42 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 9 137023016 137023016 T G WDR5 Missense_Mutation p.D302E 0.25 deleterious(0.04) benign(0.162) TCGA-EA-A410-01 9 137328483 137328483 C A RXRA 3'UTR 0.48 TCGA-EA-A410-01 9 137330644 137330644 G A RXRA 3'Flank 0.33 TCGA-EA-A410-01 9 138387400 138387400 C T C9orf116 Missense_Mutation p.R95Q 0.43 tolerated(0.27) benign(0.007) TCGA-EA-A410-01 9 139301724 139301724 G A SDCCAG3 Missense_Mutation p.A231V 0.11 tolerated(0.06) benign(0.041) TCGA-EA-A410-01 9 139390475 139390475 C T NOTCH1 3'UTR 0.48 TCGA-EA-A410-01 9 139401887 139401887 G A NOTCH1 Silent p.C1171C 0.26 TCGA-EA-A410-01 9 139616386 139616386 G A FAM69B Missense_Mutation p.R71H 0.42 tolerated(0.26) benign(0.002) TCGA-EA-A410-01 9 139700564 139700564 C T CCDC183 Missense_Mutation p.T328M 0.32 deleterious(0.02) possibly_damaging(0.712) TCGA-EA-A410-01 9 139744507 139744507 G A PHPT1 Missense_Mutation p.G68D 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-EA-A410-01 9 139802668 139802668 C T TRAF2 Silent p.C171C 0.09 TCGA-EA-A410-01 9 139889928 139889928 C T CLIC3 Missense_Mutation p.E79K 0.22 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 9 140449722 140449722 G A DPH7 Missense_Mutation p.A443V 0.30 tolerated(1) benign(0.006) TCGA-EA-A410-01 9 14086780 14086780 T - NFIB 3'Flank 0.58 TCGA-EA-A410-01 9 140995594 140995594 G A CACNA1B Intron 0.45 TCGA-EA-A410-01 9 14842512 14842512 C T FREM1 Missense_Mutation p.V514I 0.47 tolerated(1) benign(0) TCGA-EA-A410-01 9 18770763 18770763 T C ADAMTSL1 Missense_Mutation p.L794P 0.50 tolerated(0.17) probably_damaging(0.968) TCGA-EA-A410-01 9 18950909 18950909 G A FAM154A Missense_Mutation p.T22I 0.34 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 9 26997897 26997897 C T LRRC19 Missense_Mutation p.V142M 0.37 tolerated(0.19) benign(0.049) TCGA-EA-A410-01 9 27109355 27109355 C A TEK 5'UTR 0.57 TCGA-EA-A410-01 9 27329722 27329722 C T MOB3B 3'UTR 0.32 TCGA-EA-A410-01 9 27524328 27524328 A - IFNK 5'UTR p.M1? 0.37 TCGA-EA-A410-01 9 32786487 32786487 A G TMEM215 3'UTR 0.53 TCGA-EA-A410-01 9 33120463 33120463 A - B4GALT1 Frame_Shift_Del p.S264Hfs*29 0.23 TCGA-EA-A410-01 9 33674810 33674810 A G PTENP1 RNA 0.12 TCGA-EA-A410-01 9 33794839 33794839 C T PRSS3 Intron 0.34 TCGA-EA-A410-01 9 34106486 34106486 G A DCAF12 Missense_Mutation p.H183Y 0.46 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 9 34125105 34125106 CT - DCAF12 Frame_Shift_Del p.E83Vfs*7 0.32 TCGA-EA-A410-01 9 34372274 34372274 C - KIAA1161 Frame_Shift_Del p.G189Afs*57 0.54 TCGA-EA-A410-01 9 35092628 35092628 G A PIGO Missense_Mutation p.A419V 0.24 tolerated(0.14) benign(0.008) TCGA-EA-A410-01 9 35719212 35719212 C T TLN1 Silent p.T585T 0.28 TCGA-EA-A410-01 9 36338808 36338808 A - RNF38 3'UTR 0.33 TCGA-EA-A410-01 9 37442089 37442089 C T ZBTB5 Missense_Mutation p.V154M 0.52 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 9 4663209 4663209 C T PPAPDC2 Silent p.C278C 0.35 TCGA-EA-A410-01 9 5090448 5090448 C T JAK2 Missense_Mutation p.R922W 0.33 deleterious(0.02) probably_damaging(1) TCGA-EA-A410-01 9 5185531 5185531 G A INSL6 Silent p.S24S 0.41 TCGA-EA-A410-01 9 66553551 66553551 G A RP11-262H14.4 RNA 0.10 TCGA-EA-A410-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.09 deleterious(0.01) possibly_damaging(0.573) TCGA-EA-A410-01 9 71628839 71628839 C T PRKACG Missense_Mutation p.R57Q 0.34 deleterious(0) probably_damaging(0.987) TCGA-EA-A410-01 9 73461501 73461501 G A TRPM3 Nonsense_Mutation p.R157* 0.45 TCGA-EA-A410-01 9 74345058 74345058 T C TMEM2 Missense_Mutation p.T629A 0.30 deleterious(0.05) benign(0.009) TCGA-EA-A410-01 9 78682904 78682904 C T PCSK5 Silent p.A222A 0.47 TCGA-EA-A410-01 9 79910627 79910627 C T VPS13A Missense_Mutation p.S1226F 0.38 deleterious(0) probably_damaging(0.921) TCGA-EA-A410-01 9 79972725 79972725 T C VPS13A Missense_Mutation p.S2642P 0.41 deleterious(0) possibly_damaging(0.655) TCGA-EA-A410-01 9 82340801 82340801 T - TLE4 3'Flank 0.32 TCGA-EA-A410-01 9 84532131 84532131 C T SPATA31D5P RNA 0.45 TCGA-EA-A410-01 9 84533407 84533408 AG - SPATA31D5P RNA 0.32 TCGA-EA-A410-01 9 84608884 84608884 G A SPATA31D1 Missense_Mutation p.G1167R 0.36 tolerated(0.18) probably_damaging(0.982) TCGA-EA-A410-01 9 88633727 88633727 G A NAA35 Silent p.P676P 0.32 TCGA-EA-A410-01 9 90502771 90502771 C T SPATA31E1 Silent p.D1123D 0.50 TCGA-EA-A410-01 9 91083449 91083449 A G SPIN1 Missense_Mutation p.D173G 0.08 deleterious(0) possibly_damaging(0.883) TCGA-EA-A410-01 9 91266972 91266972 G A RP13-60M5.2 RNA 0.29 TCGA-EA-A410-01 9 91617301 91617301 C T S1PR3 3'UTR 0.49 TCGA-EA-A410-01 9 96070769 96070769 C T WNK2 Missense_Mutation p.A2177V 0.50 unknown(0) TCGA-EA-A410-01 9 97082747 97082747 C T NUTM2F Missense_Mutation p.A371T 0.30 tolerated(0.18) possibly_damaging(0.857) TCGA-EA-A410-01 9 97218572 97218572 C T HIATL1 Missense_Mutation p.P360L 0.38 deleterious(0) probably_damaging(0.998) TCGA-EA-A410-01 9 98209372 98209372 G T PTCH1 Missense_Mutation p.P1389H 0.34 tolerated_low_confidence(0.55) benign(0) TCGA-EA-A410-01 9 99220776 99220776 G A HABP4 Silent p.E155E 0.36 TCGA-EA-A410-01 X 100088436 100088436 C T CSTF2 Missense_Mutation p.A492V 0.33 deleterious(0.03) benign(0.039) TCGA-EA-A410-01 X 100364926 100364926 G A CENPI Missense_Mutation p.R177H 0.50 tolerated(1) benign(0) TCGA-EA-A410-01 X 100911905 100911905 C T ARMCX2 Missense_Mutation p.A224T 0.44 tolerated_low_confidence(0.62) benign(0) TCGA-EA-A410-01 X 101624732 101624732 G A NXF2B Intron 0.19 TCGA-EA-A410-01 X 105970574 105970574 T C RNF128 Missense_Mutation p.V144A 0.38 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 X 107170384 107170384 C T MID2 3'UTR 0.41 TCGA-EA-A410-01 X 107370157 107370157 G A ATG4A Intron 0.33 TCGA-EA-A410-01 X 107377374 107377374 C A ATG4A Missense_Mutation p.S127Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-EA-A410-01 X 109764338 109764338 C - TDGF1P3 RNA 0.28 TCGA-EA-A410-01 X 110980098 110980098 G A ALG13 Missense_Mutation p.G896S 0.35 tolerated(0.08) benign(0.263) TCGA-EA-A410-01 X 11139961 11139962 - T HCCS 3'UTR 0.38 TCGA-EA-A410-01 X 111697866 111697866 G A ZCCHC16 5'UTR 0.31 TCGA-EA-A410-01 X 114425058 114425058 G A RBMXL3 Missense_Mutation p.V352I 0.46 tolerated_low_confidence(0.24) benign(0.067) TCGA-EA-A410-01 X 114425724 114425724 G - RBMXL3 Frame_Shift_Del p.G575Afs*399 0.35 TCGA-EA-A410-01 X 114468414 114468414 G A LRCH2 Missense_Mutation p.P64L 0.31 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-EA-A410-01 X 119394825 119394825 G A TMEM255A Missense_Mutation p.A317V 0.29 tolerated(0.32) benign(0.002) TCGA-EA-A410-01 X 122624582 122624582 T - GRIA3 3'UTR 0.26 TCGA-EA-A410-01 X 122866832 122866832 T G THOC2 Missense_Mutation p.K14T 0.33 deleterious(0) benign(0.11) TCGA-EA-A410-01 X 128927749 128927749 G A SASH3 Missense_Mutation p.A362T 0.49 tolerated(0.6) benign(0) TCGA-EA-A410-01 X 128975824 128975824 C T ZDHHC9 Missense_Mutation p.R33Q 0.27 tolerated(0.1) probably_damaging(0.968) TCGA-EA-A410-01 X 12904870 12904870 A G TLR7 Missense_Mutation p.S415G 0.41 tolerated(0.06) benign(0.005) TCGA-EA-A410-01 X 132091057 132091057 G A HS6ST2 Silent p.F242F 0.44 TCGA-EA-A410-01 X 135314194 135314194 G - MAP7D3 Frame_Shift_Del p.Q308Rfs*2 0.31 TCGA-EA-A410-01 X 138687073 138687073 T A MCF2 Missense_Mutation p.D619V 0.44 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 X 144904117 144904118 - C SLITRK2 Frame_Shift_Ins p.Q61Pfs*35 0.33 TCGA-EA-A410-01 X 149013866 149013866 T C MAGEA8 Missense_Mutation p.F274L 0.39 deleterious(0.03) possibly_damaging(0.453) TCGA-EA-A410-01 X 150349115 150349115 G A GPR50 Missense_Mutation p.A354T 0.38 tolerated(0.32) benign(0.004) TCGA-EA-A410-01 X 150349723 150349723 C T GPR50 Silent p.D556D 0.38 TCGA-EA-A410-01 X 150867095 150867095 G A PRRG3 5'UTR 0.42 TCGA-EA-A410-01 X 150869070 150869070 G - PRRG3 Frame_Shift_Del p.V89Wfs*4 0.30 TCGA-EA-A410-01 X 1522332 1522332 C T ASMTL Missense_Mutation p.A566T 0.43 tolerated(0.1) benign(0.223) TCGA-EA-A410-01 X 152846422 152846422 C T ATP2B3 3'UTR 0.49 TCGA-EA-A410-01 X 152846546 152846546 T G ATP2B3 3'UTR 0.19 TCGA-EA-A410-01 X 153040451 153040451 C T PLXNB3 Silent p.L1373L 0.40 TCGA-EA-A410-01 X 153184291 153184291 C T ARHGAP4 Missense_Mutation p.D383N 0.24 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 X 153210041 153210041 G A RENBP Nonsense_Mutation p.R8* 0.30 TCGA-EA-A410-01 X 15333633 15333633 A - ASB11 Frame_Shift_Del p.L32Wfs*4 0.33 TCGA-EA-A410-01 X 153590835 153590835 G A FLNA Missense_Mutation p.T839M 0.50 tolerated(0.19) benign(0.259) TCGA-EA-A410-01 X 153648073 153648073 C T TAZ Missense_Mutation p.R191C 0.43 deleterious(0) possibly_damaging(0.849) TCGA-EA-A410-01 X 153660654 153660654 G A ATP6AP1 Missense_Mutation p.V136I 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-EA-A410-01 X 153689642 153689642 C T PLXNA3 Silent p.C266C 0.40 TCGA-EA-A410-01 X 154292326 154292326 A T MTCP1 3'UTR 0.33 TCGA-EA-A410-01 X 154489943 154489943 C T RAB39B 3'UTR 0.61 TCGA-EA-A410-01 X 15574314 15574314 C T BMX 3'UTR 0.45 TCGA-EA-A410-01 X 18970625 18970625 C T PHKA2 Missense_Mutation p.C91Y 0.39 deleterious(0) probably_damaging(0.954) TCGA-EA-A410-01 X 19587240 19587240 C T SH3KBP1 Silent p.S455S 0.34 TCGA-EA-A410-01 X 19854294 19854294 C T SH3KBP1 Nonsense_Mutation p.W37* 0.35 TCGA-EA-A410-01 X 21674329 21674329 G A KLHL34 Silent p.G526G 0.20 TCGA-EA-A410-01 X 21674673 21674673 G A KLHL34 Missense_Mutation p.R412W 0.67 deleterious(0.02) possibly_damaging(0.846) TCGA-EA-A410-01 X 23411835 23411835 G A PTCHD1 Missense_Mutation p.V734M 0.40 tolerated(0.07) probably_damaging(0.999) TCGA-EA-A410-01 X 23723185 23723185 C T ACOT9 Silent p.P344P 0.43 TCGA-EA-A410-01 X 2407820 2407820 C T ZBED1 Missense_Mutation p.R314H 0.34 deleterious(0.02) possibly_damaging(0.64) TCGA-EA-A410-01 X 27765896 27765896 G T DCAF8L2 Missense_Mutation p.G295V 0.36 deleterious(0) probably_damaging(0.995) TCGA-EA-A410-01 X 2799220 2799220 G A GYG2 Missense_Mutation p.R491H 0.55 tolerated(0.29) benign(0.189) TCGA-EA-A410-01 X 2838756 2838756 C T ARSD Missense_Mutation p.A109T 0.42 tolerated(0.05) benign(0.147) TCGA-EA-A410-01 X 302052 302052 T - PPP2R3B Frame_Shift_Del p.T389Hfs*70 0.34 TCGA-EA-A410-01 X 37027641 37027641 C T FAM47C Silent p.R386R 0.39 TCGA-EA-A410-01 X 37553623 37553623 A - XK Frame_Shift_Del p.N112Mfs*18 0.36 TCGA-EA-A410-01 X 38420774 38420774 C T TSPAN7 5'UTR 0.43 TCGA-EA-A410-01 X 39923082 39923082 C T BCOR Missense_Mutation p.R1209H 0.43 tolerated(0.11) probably_damaging(0.975) TCGA-EA-A410-01 X 40511007 40511007 T - MED14 3'UTR 0.33 TCGA-EA-A410-01 X 40551995 40551995 T - MED14 Frame_Shift_Del p.T604Pfs*20 0.17 TCGA-EA-A410-01 X 47045156 47045156 C T RBM10 Silent p.N799N 0.41 TCGA-EA-A410-01 X 47082553 47082553 G A CDK16 Missense_Mutation p.R20H 0.48 tolerated_low_confidence(0.2) benign(0.058) TCGA-EA-A410-01 X 47088506 47088506 A G CDK16 3'UTR 0.38 TCGA-EA-A410-01 X 48566018 48566018 C T SUV39H1 3'UTR 0.41 TCGA-EA-A410-01 X 48858647 48858647 C - GRIPAP1 5'UTR 0.27 TCGA-EA-A410-01 X 48926531 48926532 TG - CCDC120 3'UTR 0.33 TCGA-EA-A410-01 X 49033454 49033454 G A PRICKLE3 Silent p.R351R 0.45 TCGA-EA-A410-01 X 49646938 49646938 T G USP27X 3'UTR 0.50 TCGA-EA-A410-01 X 49851019 49851019 G A CLCN5 Missense_Mutation p.R350H 0.36 deleterious(0) possibly_damaging(0.872) TCGA-EA-A410-01 X 49862769 49862769 T - CLCN5 3'UTR 0.43 TCGA-EA-A410-01 X 51075876 51075876 C T NUDT10 Missense_Mutation p.A20V 0.32 deleterious(0) possibly_damaging(0.875) TCGA-EA-A410-01 X 51486628 51486628 C T GSPT2 5'UTR 0.41 TCGA-EA-A410-01 X 53106059 53106059 G A GPR173 Missense_Mutation p.G86S 0.40 tolerated(0.2) benign(0.358) TCGA-EA-A410-01 X 53117499 53117499 G A TSPYL2 3'UTR 0.33 TCGA-EA-A410-01 X 56259668 56259668 G A KLF8 5'UTR 0.47 TCGA-EA-A410-01 X 57618381 57618381 T - ZXDB 5'UTR 0.55 TCGA-EA-A410-01 X 62944447 62944447 C T ARHGEF9 Missense_Mutation p.D52N 0.41 deleterious(0.04) possibly_damaging(0.756) TCGA-EA-A410-01 X 63411695 63411695 C T AMER1 Missense_Mutation p.R491H 0.39 tolerated(0.6) benign(0.001) TCGA-EA-A410-01 X 64949405 64949405 C T MSN Missense_Mutation p.R100C 0.34 deleterious(0) probably_damaging(0.992) TCGA-EA-A410-01 X 65486413 65486414 - T HEPH Frame_Shift_Ins p.G1181Wfs*17 0.30 TCGA-EA-A410-01 X 65825015 65825015 G A EDA2R Silent p.R47R 0.35 TCGA-EA-A410-01 X 66942681 66942681 G T AR Missense_Mutation p.G821V 0.29 deleterious(0) probably_damaging(0.997) TCGA-EA-A410-01 X 69497631 69497632 - A ARR3 Frame_Shift_Ins p.I228Nfs*6 0.38 TCGA-EA-A410-01 X 70320655 70320655 G A FOXO4 Missense_Mutation p.R192H 0.42 deleterious(0) probably_damaging(0.979) TCGA-EA-A410-01 X 70327614 70327614 G - IL2RG Frame_Shift_Del p.P361Hfs*5 0.26 TCGA-EA-A410-01 X 70345265 70345265 G A MED12 Missense_Mutation p.R764Q 0.38 probably_damaging(0.996) TCGA-EA-A410-01 X 70387401 70387401 A T NLGN3 Missense_Mutation p.E485V 0.55 tolerated(0.42) possibly_damaging(0.685) TCGA-EA-A410-01 X 70602865 70602865 C T TAF1 Missense_Mutation p.R620W 0.46 tolerated(0.1) benign(0.03) TCGA-EA-A410-01 X 70607235 70607235 G C TAF1 Missense_Mutation p.G804A 0.31 deleterious(0) benign(0.414) TCGA-EA-A410-01 X 70618478 70618478 G A TAF1 Missense_Mutation p.R1246Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EA-A410-01 X 71360172 71360172 G A NHSL2 Missense_Mutation p.R925Q 0.46 deleterious(0.04) possibly_damaging(0.681) TCGA-EA-A410-01 X 71787751 71787751 T C HDAC8 Missense_Mutation p.H142R 0.37 deleterious(0.01) probably_damaging(0.952) TCGA-EA-A410-01 X 72901149 72901149 G T CHIC1 3'UTR 0.35 TCGA-EA-A410-01 X 75003967 75003967 G A MAGEE2 Missense_Mutation p.S307L 0.37 deleterious(0.04) probably_damaging(0.978) TCGA-EA-A410-01 X 76225871 76225871 A G MIR325 RNA 0.40 TCGA-EA-A410-01 X 82764246 82764246 C T POU3F4 Missense_Mutation p.A305V 0.28 deleterious(0) probably_damaging(1) TCGA-EA-A410-01 X 91133712 91133712 G A PCDH11X Missense_Mutation p.V825I 0.41 tolerated(1) benign(0.009) TCGA-EA-A410-01 X 92928116 92928116 C T NAP1L3 Missense_Mutation p.S63N 0.56 tolerated(0.15) benign(0.092) TCGA-EA-A411-01 10 133950592 133950592 G C JAKMIP3 Missense_Mutation p.E396Q 0.26 deleterious(0) possibly_damaging(0.599) TCGA-EA-A411-01 10 33502528 33502528 C G NRP1 Missense_Mutation p.S467T 0.42 tolerated(0.1) possibly_damaging(0.837) TCGA-EA-A411-01 11 120295078 120295078 T G ARHGEF12 Silent p.T120T 0.24 TCGA-EA-A411-01 11 49207317 49207317 C T FOLH1 Missense_Mutation p.D244N 0.45 tolerated(0.29) benign(0.003) TCGA-EA-A411-01 11 89392796 89392796 G A FOLH1B RNA 0.10 TCGA-EA-A411-01 11 89774506 89774506 A G TRIM49C Missense_Mutation p.I383V 0.08 tolerated(1) benign(0.001) TCGA-EA-A411-01 12 4764034 4764034 A C NDUFA9 Missense_Mutation p.K88N 0.21 tolerated(0.51) benign(0.063) TCGA-EA-A411-01 12 56482537 56482537 G C ERBB3 Missense_Mutation p.E332Q 0.32 tolerated(0.13) benign(0.237) TCGA-EA-A411-01 12 64456756 64456756 G A SRGAP1 Silent p.A287A 0.28 TCGA-EA-A411-01 13 30084531 30084531 C T SLC7A1 3'UTR 0.59 TCGA-EA-A411-01 14 107179081 107179081 T A IGHV2-70 Missense_Mutation p.K32N 0.18 deleterious(0) probably_damaging(0.947) TCGA-EA-A411-01 14 24785183 24785183 C A LTB4R Missense_Mutation p.T109K 0.21 deleterious(0.02) possibly_damaging(0.871) TCGA-EA-A411-01 14 36840868 36840868 G A DPPA3P2 RNA 0.22 TCGA-EA-A411-01 14 38016548 38016548 C T MIPOL1 3'UTR 0.43 TCGA-EA-A411-01 14 81259223 81259223 C T CEP128 Missense_Mutation p.D481N 0.34 deleterious(0) benign(0.208) TCGA-EA-A411-01 14 86087985 86087985 G A FLRT2 Missense_Mutation p.D43N 0.16 deleterious(0) possibly_damaging(0.826) TCGA-EA-A411-01 14 94770649 94770649 A G SERPINA6 3'UTR 0.22 TCGA-EA-A411-01 15 34438961 34438961 C A KATNBL1 Splice_Site p.X263_splice 0.32 TCGA-EA-A411-01 15 43701248 43701248 C T TP53BP1 Missense_Mutation p.R1816Q 0.41 deleterious(0.03) probably_damaging(1) TCGA-EA-A411-01 15 50535348 50535348 G A HDC Missense_Mutation p.R412C 0.33 tolerated(0.07) probably_damaging(0.932) TCGA-EA-A411-01 16 31500316 31500316 C T SLC5A2 Missense_Mutation p.P466S 0.36 deleterious(0.01) probably_damaging(0.957) TCGA-EA-A411-01 16 69056854 69056854 A G TANGO6 Missense_Mutation p.D989G 0.34 tolerated(0.58) benign(0.008) TCGA-EA-A411-01 16 789659 789659 T A NARFL Missense_Mutation p.Y49F 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-EA-A411-01 17 3716255 3716255 C T C17orf85 3'UTR 0.20 TCGA-EA-A411-01 17 7604112 7604112 T A WRAP53 Nonsense_Mutation p.Y232* 0.16 TCGA-EA-A411-01 17 76203007 76203007 A G AFMID Missense_Mutation p.I306V 0.23 tolerated(0.1) benign(0.128) TCGA-EA-A411-01 18 2728529 2728529 C T SMCHD1 Nonsense_Mutation p.Q950* 0.29 TCGA-EA-A411-01 19 14200150 14200150 C G SAMD1 Missense_Mutation p.E221Q 0.23 tolerated(0.15) unknown(0) TCGA-EA-A411-01 19 23328284 23328284 G C ZNF730 Missense_Mutation p.Q146H 0.07 deleterious(0.03) benign(0.001) TCGA-EA-A411-01 19 53912462 53912462 T C ZNF765 3'UTR 0.42 TCGA-EA-A411-01 19 58004475 58004475 G C ZNF419 Missense_Mutation p.E185Q 0.15 tolerated(0.59) benign(0.059) TCGA-EA-A411-01 19 736065 736065 C T PALM Silent p.P163P 0.40 TCGA-EA-A411-01 1 108115882 108115882 C G VAV3 3'UTR 0.09 TCGA-EA-A411-01 1 12632817 12632817 G A DHRS3 Nonsense_Mutation p.Q255* 0.33 TCGA-EA-A411-01 1 155932853 155932853 G A ARHGEF2 Silent p.C282C 0.22 TCGA-EA-A411-01 1 219347236 219347236 G A LYPLAL1 Missense_Mutation p.A2T 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.598) TCGA-EA-A411-01 1 22974214 22974214 G A C1QC Missense_Mutation p.D226N 0.28 tolerated(0.05) benign(0.003) TCGA-EA-A411-01 1 236749539 236749539 A C HEATR1 Splice_Site p.X643_splice 0.10 TCGA-EA-A411-01 1 247587315 247587315 C T NLRP3 Silent p.I190I 0.14 TCGA-EA-A411-01 1 38227721 38227721 C T EPHA10 Missense_Mutation p.R69H 0.32 tolerated(0.12) probably_damaging(0.998) TCGA-EA-A411-01 1 62920674 62920674 C T DOCK7 3'UTR 0.08 TCGA-EA-A411-01 20 44680474 44680482 AGAAGGAAG - SLC12A5 In_Frame_Del p.Q804_D807delinsH 0.27 TCGA-EA-A411-01 20 9546832 9546832 G A PAK7 Missense_Mutation p.T397M 0.15 tolerated(0.08) possibly_damaging(0.828) TCGA-EA-A411-01 22 38120147 38120147 A C TRIOBP Silent p.T528T 0.09 TCGA-EA-A411-01 22 42526800 42526800 C G CYP2D6 5'UTR 0.26 TCGA-EA-A411-01 2 105858468 105858468 C A GPR45 Silent p.G51G 0.41 TCGA-EA-A411-01 2 171906600 171906600 T G TLK1 Missense_Mutation p.M273L 0.11 tolerated(0.15) benign(0.132) TCGA-EA-A411-01 2 32339750 32339750 T C SPAST Silent p.T242T 0.14 TCGA-EA-A411-01 2 50765667 50765667 C A NRXN1 Missense_Mutation p.A663S 0.09 tolerated(0.57) benign(0.02) TCGA-EA-A411-01 3 122869160 122869160 C T PDIA5 Missense_Mutation p.R408W 0.17 deleterious(0) probably_damaging(0.987) TCGA-EA-A411-01 3 124947181 124947181 G C ZNF148 3'UTR 0.06 TCGA-EA-A411-01 3 195509191 195509191 G C MUC4 Missense_Mutation p.T3087S 0.05 possibly_damaging(0.702) TCGA-EA-A411-01 3 38232252 38232252 C G OXSR1 Missense_Mutation p.H72D 0.37 deleterious(0) probably_damaging(0.994) TCGA-EA-A411-01 4 74354469 74354469 G T AFM Missense_Mutation p.R279L 0.43 tolerated(0.11) benign(0.185) TCGA-EA-A411-01 5 115238600 115238600 G A AP3S1 Missense_Mutation p.E122K 0.18 deleterious(0) probably_damaging(0.973) TCGA-EA-A411-01 5 140769353 140769353 C T PCDHGB4 Silent p.D634D 0.24 TCGA-EA-A411-01 6 127609032 127609032 G A RNF146 3'UTR 0.30 TCGA-EA-A411-01 6 130392142 130392142 C A L3MBTL3 Silent p.R372R 0.15 TCGA-EA-A411-01 6 133047960 133047960 G A VNN3 Intron 0.47 TCGA-EA-A411-01 6 39158873 39158873 G A KCNK5 Silent p.D431D 0.37 TCGA-EA-A411-01 6 46656457 46656457 C T TDRD6 Missense_Mutation p.R198W 0.51 deleterious(0) probably_damaging(0.995) TCGA-EA-A411-01 6 94066638 94066638 C A EPHA7 Missense_Mutation p.W374L 0.13 tolerated(0.69) benign(0.001) TCGA-EA-A411-01 7 30468996 30468996 T C NOD1 Missense_Mutation p.E928G 0.32 deleterious(0) possibly_damaging(0.907) TCGA-EA-A411-01 7 38725720 38725720 C T FAM183B 5'UTR 0.45 TCGA-EA-A411-01 7 65546867 65546867 C T ASL Silent p.Y30Y 0.23 TCGA-EA-A411-01 8 100844677 100844677 T G VPS13B Silent p.P3162P 0.26 TCGA-EA-A411-01 8 85833513 85833513 G A RALYL 3'UTR 0.14 TCGA-EA-A411-01 8 88884935 88884935 G A DCAF4L2 3'UTR 0.33 TCGA-EA-A411-01 8 95789995 95789995 C A DPY19L4 Missense_Mutation p.T519N 0.22 tolerated(0.4) benign(0.006) TCGA-EA-A411-01 9 39073717 39073717 T A CNTNAP3 3'UTR 0.10 TCGA-EA-A411-01 9 69416171 69416171 A G ANKRD20A4 Missense_Mutation p.Q373R 0.14 deleterious(0.03) benign(0) TCGA-EA-A411-01 9 95477597 95477597 G C BICD2 Missense_Mutation p.H803D 0.21 deleterious(0.04) possibly_damaging(0.476) TCGA-EA-A411-01 X 101141647 101141647 C A ZMAT1 Missense_Mutation p.D188Y 0.11 tolerated(0.07) benign(0.175) TCGA-EA-A411-01 X 104961396 104961396 G T IL1RAPL2 Missense_Mutation p.G270V 0.28 deleterious(0.02) probably_damaging(1) TCGA-EA-A411-01 X 152990941 152990941 C T ABCD1 Missense_Mutation p.R74W 0.38 deleterious(0) probably_damaging(0.989) TCGA-EA-A411-01 X 153059924 153059924 G C SSR4 5'UTR 0.14 TCGA-EA-A411-01 X 155005749 155005749 T C SPRY3 3'UTR 0.14 TCGA-EA-A411-01 X 38533571 38533571 G A TSPAN7 Splice_Site p.X147_splice 0.30 TCGA-EA-A411-01 X 55514364 55514364 C G USP51 Missense_Mutation p.E337Q 0.19 deleterious(0.05) benign(0.004) TCGA-EA-A411-01 X 73046384 73046384 C A XIST RNA 0.06 TCGA-EA-A411-01 X 90691628 90691628 T C PABPC5 Missense_Mutation p.F351S 0.10 deleterious(0.01) benign(0.03) TCGA-EA-A411-01 X 99920650 99920650 A G SRPX2 Silent p.V259V 0.11 TCGA-EA-A439-01 10 112343217 112343217 G A SMC3 Missense_Mutation p.E294K 0.33 deleterious(0.01) benign(0.092) TCGA-EA-A439-01 10 11299828 11299828 G C CELF2 Silent p.L177L 0.24 TCGA-EA-A439-01 10 115405665 115405665 G A NRAP Silent p.G343G 0.30 TCGA-EA-A439-01 10 17113832 17113832 G C CUBN Missense_Mutation p.Q814E 0.22 tolerated(0.19) benign(0.134) TCGA-EA-A439-01 10 88196319 88196319 C T WAPAL 3'UTR 0.20 TCGA-EA-A439-01 11 1016049 1016049 G A MUC6 Missense_Mutation p.T2251M 0.19 possibly_damaging(0.791) TCGA-EA-A439-01 11 1019337 1019337 G A MUC6 Missense_Mutation p.S1323F 0.33 unknown(0) TCGA-EA-A439-01 11 118036054 118036054 T - SCN2B 3'UTR 0.22 TCGA-EA-A439-01 11 128858006 128858006 G A ARHGAP32 Nonsense_Mutation p.Q390* 0.29 TCGA-EA-A439-01 11 132307162 132307162 G A OPCML Silent p.N206N 0.28 TCGA-EA-A439-01 11 1491348 1491348 G C MOB2 3'UTR 0.28 TCGA-EA-A439-01 11 2356733 2356733 C T CD81-AS1 Intron 0.52 TCGA-EA-A439-01 11 5655130 5655130 G T TRIM34 Splice_Site p.X173_splice 0.34 TCGA-EA-A439-01 12 111788345 111788345 G A CUX2 3'UTR 0.29 TCGA-EA-A439-01 12 112622247 112622247 G C HECTD4 Missense_Mutation p.S3362C 0.31 possibly_damaging(0.639) TCGA-EA-A439-01 12 119594444 119594444 G A SRRM4 Silent p.R559R 0.16 TCGA-EA-A439-01 12 121220471 121220471 C T SPPL3 Nonsense_Mutation p.W163* 0.24 TCGA-EA-A439-01 12 129028589 129028589 C T TMEM132C Silent p.G354G 0.22 TCGA-EA-A439-01 12 129563184 129563184 C T TMEM132D Silent p.V670V 0.15 TCGA-EA-A439-01 12 132466052 132466052 G C EP400 Missense_Mutation p.R485P 0.23 unknown(0) TCGA-EA-A439-01 12 13715656 13715656 C T GRIN2B 3'UTR 0.25 TCGA-EA-A439-01 12 50295127 50295127 G A FAIM2 Intron 0.21 TCGA-EA-A439-01 12 56216892 56216892 C T DNAJC14 Missense_Mutation p.M532I 0.22 deleterious(0.03) benign(0.026) TCGA-EA-A439-01 12 57598989 57598989 C T LRP1 Silent p.F3764F 0.20 TCGA-EA-A439-01 12 57604559 57604559 G A LRP1 Silent p.V4271V 0.26 TCGA-EA-A439-01 12 6232014 6232014 C T VWF Intron 0.18 TCGA-EA-A439-01 12 78553032 78553032 G A NAV3 Missense_Mutation p.R1612Q 0.17 deleterious(0) possibly_damaging(0.848) TCGA-EA-A439-01 12 88547151 88547151 A G TMTC3 Silent p.S91S 0.21 TCGA-EA-A439-01 13 73366588 73366588 G A PIBF1 Missense_Mutation p.E86K 0.28 deleterious(0) probably_damaging(0.994) TCGA-EA-A439-01 13 86369518 86369518 G A SLITRK6 Missense_Mutation p.H376Y 0.22 tolerated(0.05) benign(0.178) TCGA-EA-A439-01 14 101441171 101441171 G T SNORD114-17 RNA 0.15 TCGA-EA-A439-01 14 23512619 23512619 C T PSMB11 3'UTR 0.25 TCGA-EA-A439-01 14 36157725 36157725 C G RALGAPA1 Intron 0.31 TCGA-EA-A439-01 14 68221929 68221929 G A ZFYVE26 Silent p.F2275F 0.16 TCGA-EA-A439-01 14 75505074 75505074 C T MLH3 Missense_Mutation p.M1204I 0.10 tolerated(1) benign(0.401) TCGA-EA-A439-01 14 94780392 94780392 G C SERPINA6 Silent p.V198V 0.23 TCGA-EA-A439-01 15 22368990 22368990 C T OR4M2 Missense_Mutation p.R139C 0.04 deleterious(0.03) benign(0.003) TCGA-EA-A439-01 15 45404058 45404058 C T DUOX2 Missense_Mutation p.D141N 0.27 deleterious(0.03) possibly_damaging(0.857) TCGA-EA-A439-01 15 90189187 90189187 G A KIF7 Missense_Mutation p.S620L 0.41 tolerated(0.13) benign(0.002) TCGA-EA-A439-01 15 91181971 91181971 C T CRTC3 Missense_Mutation p.S491L 0.42 tolerated(0.52) benign(0.146) TCGA-EA-A439-01 16 14311069 14311069 C G MKL2 Missense_Mutation p.Q147E 0.37 deleterious(0) probably_damaging(0.971) TCGA-EA-A439-01 16 18849892 18849892 G A SMG1 Silent p.Y2355Y 0.32 TCGA-EA-A439-01 16 55362858 55362858 G A IRX6 Missense_Mutation p.G323E 0.23 tolerated(0.19) benign(0.007) TCGA-EA-A439-01 16 57070034 57070034 G A NLRC5 Missense_Mutation p.D884N 0.24 deleterious(0.02) possibly_damaging(0.739) TCGA-EA-A439-01 16 70902608 70902608 C A HYDIN Silent p.R3725R 0.06 TCGA-EA-A439-01 16 71127826 71127826 C T HYDIN Missense_Mutation p.R447H 0.19 possibly_damaging(0.865) TCGA-EA-A439-01 16 72993679 72993679 C T ZFHX3 Silent p.E122E 0.16 TCGA-EA-A439-01 16 75301816 75301816 G A BCAR1 5'Flank 0.22 TCGA-EA-A439-01 16 89865582 89865582 C T FANCA Silent p.V295V 0.21 TCGA-EA-A439-01 17 10398362 10398362 C T MYH1 Silent p.E1784E 0.31 TCGA-EA-A439-01 17 2587799 2587799 C T PAFAH1B1 3'UTR 0.50 TCGA-EA-A439-01 17 30771577 30771577 C T PSMD11 Silent p.A12A 0.42 TCGA-EA-A439-01 17 34252522 34252522 G A RDM1 Silent p.I132I 0.26 TCGA-EA-A439-01 17 57466782 57466782 G A YPEL2 Missense_Mutation p.A75T 0.12 tolerated(0.06) possibly_damaging(0.613) TCGA-EA-A439-01 17 65050167 65050167 C T CACNG1 Silent p.F95F 0.18 TCGA-EA-A439-01 17 6526939 6526940 - T KIAA0753 Intron 0.20 TCGA-EA-A439-01 17 78176112 78176112 C T CARD14 Silent p.H704H 0.13 TCGA-EA-A439-01 17 78857241 78857241 C T RPTOR Missense_Mutation p.A536V 0.57 tolerated(0.07) benign(0.025) TCGA-EA-A439-01 17 78931496 78931496 G A RPTOR Missense_Mutation p.R1148Q 0.06 tolerated(0.07) benign(0.187) TCGA-EA-A439-01 17 79410893 79410893 G A RP11-1055B8.7 Silent p.T758T 0.19 TCGA-EA-A439-01 19 15905236 15905236 C T OR10H5 Silent p.I126I 0.25 TCGA-EA-A439-01 19 30020810 30020810 C T VSTM2B Missense_Mutation p.R128C 0.22 deleterious(0) probably_damaging(0.971) TCGA-EA-A439-01 19 39370308 39370308 C T SIRT2 Missense_Mutation p.G304E 0.17 tolerated(0.18) benign(0.115) TCGA-EA-A439-01 19 41008209 41008209 G A SPTBN4 Missense_Mutation p.E358K 0.26 deleterious(0) benign(0.005) TCGA-EA-A439-01 19 45895562 45895562 G A PPP1R13L Missense_Mutation p.P464L 0.07 tolerated(0.1) possibly_damaging(0.726) TCGA-EA-A439-01 19 50792782 50792782 A T MYH14 Silent p.T1614T 0.17 TCGA-EA-A439-01 19 50958397 50958397 C T MYBPC2 Nonsense_Mutation p.Q683* 0.14 TCGA-EA-A439-01 19 51917047 51917047 C T SIGLEC10 Silent p.Q580Q 0.18 TCGA-EA-A439-01 19 54649372 54649372 G C CNOT3 Missense_Mutation p.E174D 0.12 tolerated(0.12) benign(0.194) TCGA-EA-A439-01 19 55858727 55858727 C T SUV420H2 Silent p.L433L 0.46 TCGA-EA-A439-01 19 56156266 56156266 C G ZNF581 Missense_Mutation p.S110W 0.17 deleterious(0) probably_damaging(1) TCGA-EA-A439-01 1 10327472 10327472 G A KIF1B Missense_Mutation p.R155Q 0.31 deleterious(0) probably_damaging(0.987) TCGA-EA-A439-01 1 152275919 152275919 T A FLG Missense_Mutation p.N3815Y 0.19 unknown(0) TCGA-EA-A439-01 1 160187440 160187440 G A DCAF8 Missense_Mutation p.S733F 0.18 deleterious(0) possibly_damaging(0.838) TCGA-EA-A439-01 1 162493117 162493117 G C UHMK1 3'UTR 0.32 TCGA-EA-A439-01 1 169100675 169100675 A G ATP1B1 Missense_Mutation p.N265S 0.16 deleterious(0) possibly_damaging(0.741) TCGA-EA-A439-01 1 20649867 20649867 C T VWA5B1 Missense_Mutation p.R329C 0.31 deleterious(0) probably_damaging(0.998) TCGA-EA-A439-01 1 209823454 209823454 C T LAMB3 Missense_Mutation p.G13D 0.24 tolerated(0.44) benign(0.101) TCGA-EA-A439-01 1 21887187 21887187 C G ALPL Missense_Mutation p.Q44E 0.31 tolerated(0.14) benign(0.141) TCGA-EA-A439-01 1 246903556 246903556 C A SCCPDH Missense_Mutation p.S156Y 0.17 deleterious(0) probably_damaging(0.928) TCGA-EA-A439-01 1 29391700 29391700 G A EPB41 Intron 0.31 TCGA-EA-A439-01 1 32686761 32686761 A C TMEM234 Missense_Mutation p.L69R 0.21 deleterious(0.02) probably_damaging(0.959) TCGA-EA-A439-01 1 55075436 55075436 G C FAM151A Silent p.L421L 0.12 TCGA-EA-A439-01 1 55075447 55075447 G C FAM151A Missense_Mutation p.P418A 0.17 tolerated(0.25) benign(0.175) TCGA-EA-A439-01 1 67423820 67423820 G A MIER1 Missense_Mutation p.E140K 0.38 tolerated(0.39) possibly_damaging(0.67) TCGA-EA-A439-01 1 891554 891554 C T NOC2L Silent p.A176A 0.27 TCGA-EA-A439-01 1 91733304 91733304 G A HFM1 Missense_Mutation p.S1294L 0.19 deleterious_low_confidence(0.02) benign(0.098) TCGA-EA-A439-01 1 984694 984694 G T AGRN Silent p.L1459L 0.21 TCGA-EA-A439-01 20 55931505 55931505 C T RAE1 Missense_Mutation p.R67C 0.13 deleterious(0) probably_damaging(0.999) TCGA-EA-A439-01 20 57226923 57226923 C G STX16 5'UTR 0.17 TCGA-EA-A439-01 20 5753576 5753576 C T C20orf196 Missense_Mutation p.S22L 0.12 deleterious(0.03) benign(0.077) TCGA-EA-A439-01 20 61511181 61511181 C T DIDO1 Missense_Mutation p.E2043K 0.11 benign(0.416) TCGA-EA-A439-01 22 18572187 18572187 C T PEX26 3'UTR 0.20 TCGA-EA-A439-01 22 18609626 18609626 C G TUBA8 Missense_Mutation p.S294C 0.24 deleterious_low_confidence(0) benign(0.269) TCGA-EA-A439-01 22 21237835 21237835 C T SNAP29 Silent p.H199H 0.21 TCGA-EA-A439-01 22 21538766 21538766 C T FAM230B RNA 0.24 TCGA-EA-A439-01 22 30951193 30951193 C T GAL3ST1 Missense_Mutation p.R340H 0.26 deleterious(0.04) benign(0.009) TCGA-EA-A439-01 22 46757285 46757285 C T CELSR1 3'UTR 0.24 TCGA-EA-A439-01 2 107029640 107029640 G A RGPD3 Silent p.F1722F 0.50 TCGA-EA-A439-01 2 136872945 136872945 T C CXCR4 Missense_Mutation p.I189V 0.40 tolerated(1) benign(0.001) TCGA-EA-A439-01 2 148685848 148685849 - T ACVR2A 3'UTR 0.27 TCGA-EA-A439-01 2 179469564 179469564 C G TTN Missense_Mutation p.L18084F 0.27 TCGA-EA-A439-01 2 179489195 179489195 C T TTN Missense_Mutation p.V14938M 0.14 TCGA-EA-A439-01 2 191067942 191067942 A G C2orf88 3'UTR 0.33 TCGA-EA-A439-01 2 206659477 206659477 G C NRP2 Splice_Site p.X831_splice 0.44 TCGA-EA-A439-01 2 215854146 215854146 C T ABCA12 Missense_Mutation p.D1246N 0.62 deleterious(0.01) probably_damaging(1) TCGA-EA-A439-01 2 241922262 241922262 G A AC104809.2 RNA 0.50 TCGA-EA-A439-01 2 87017672 87017672 C G CD8A Missense_Mutation p.R61P 0.36 tolerated(0.7) benign(0.007) TCGA-EA-A439-01 3 111312310 111312310 T A ZBED2 3'UTR 0.44 TCGA-EA-A439-01 3 130286029 130286029 G C COL6A6 Missense_Mutation p.R589T 0.40 deleterious(0) possibly_damaging(0.805) TCGA-EA-A439-01 3 173998301 173998301 G A NLGN1 Silent p.T560T 0.53 TCGA-EA-A439-01 3 184008096 184008096 C G ECE2 Missense_Mutation p.F653L 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-EA-A439-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.24 deleterious_low_confidence(0.02) benign(0.001) TCGA-EA-A439-01 4 106190797 106190797 C T TET2 Missense_Mutation p.R1359C 0.47 deleterious(0.01) possibly_damaging(0.841) TCGA-EA-A439-01 4 106196258 106196258 C G TET2 Missense_Mutation p.L1531V 0.32 tolerated(0.27) benign(0.038) TCGA-EA-A439-01 4 118004833 118004833 C A TRAM1L1 3'UTR 0.29 TCGA-EA-A439-01 4 162459336 162459336 C T FSTL5 Missense_Mutation p.D432N 0.26 deleterious(0) probably_damaging(0.98) TCGA-EA-A439-01 4 47853888 47853888 C T NFXL1 Silent p.K831K 0.28 TCGA-EA-A439-01 4 654372 654372 C T PDE6B Silent p.G528G 0.35 TCGA-EA-A439-01 4 80898694 80898694 C T ANTXR2 3'Flank 0.20 TCGA-EA-A439-01 4 9982227 9982227 G A SLC2A9 Silent p.L224L 0.32 TCGA-EA-A439-01 5 140581381 140581381 G A PCDHB11 Silent p.P678P 0.36 TCGA-EA-A439-01 5 156589453 156589453 C A FAM71B 3'UTR 0.31 TCGA-EA-A439-01 5 156589475 156589475 C - FAM71B Frame_Shift_Del p.E601Kfs*55 0.21 TCGA-EA-A439-01 5 156589551 156589551 C G FAM71B Missense_Mutation p.E575D 0.32 deleterious(0.04) benign(0.213) TCGA-EA-A439-01 5 74848348 74848348 C T POLK Nonsense_Mutation p.R63* 0.43 TCGA-EA-A439-01 5 77452106 77452106 C T AP3B1 Missense_Mutation p.M483I 0.48 tolerated(0.08) benign(0.089) TCGA-EA-A439-01 6 151687599 151687599 G A ZBTB2 Missense_Mutation p.S201L 0.31 tolerated(0.22) benign(0.054) TCGA-EA-A439-01 6 27839983 27839983 C G HIST1H3I Missense_Mutation p.K37N 0.25 deleterious_low_confidence(0.03) benign(0.069) TCGA-EA-A439-01 6 32049228 32049228 T C RNA5SP206 5'Flank 0.35 TCGA-EA-A439-01 7 127894739 127894739 G A LEP Missense_Mutation p.E143K 0.36 deleterious(0.01) probably_damaging(0.979) TCGA-EA-A439-01 7 128767638 128767638 G A RP11-286H14.4 RNA 0.33 TCGA-EA-A439-01 7 134618683 134618683 G A CALD1 Missense_Mutation p.R388H 0.17 tolerated_low_confidence(0.35) unknown(0) TCGA-EA-A439-01 7 141764242 141764242 G C MGAM Missense_Mutation p.Q1468H 0.43 tolerated(0.07) benign(0.063) TCGA-EA-A439-01 7 15725558 15725558 G A MEOX2 Missense_Mutation p.A157V 0.37 tolerated(0.33) benign(0) TCGA-EA-A439-01 7 1785298 1785298 G A ELFN1 Missense_Mutation p.V356M 0.39 deleterious(0) possibly_damaging(0.868) TCGA-EA-A439-01 7 5410712 5410712 C A TNRC18 Missense_Mutation p.E1171D 0.31 benign(0.4) TCGA-EA-A439-01 7 8475386 8475386 A G NXPH1 Missense_Mutation p.T15A 0.38 tolerated(0.72) benign(0) TCGA-EA-A439-01 8 140630753 140630753 C T KCNK9 Silent p.P291P 0.71 TCGA-EA-A439-01 8 144997455 144997455 C T PLEC Silent p.A2351A 0.36 TCGA-EA-A439-01 8 48921026 48921026 C T UBE2V2 Silent p.S4S 0.72 TCGA-EA-A439-01 8 61504434 61504434 G A RAB2A Missense_Mutation p.R127K 0.22 deleterious(0) probably_damaging(0.982) TCGA-EA-A439-01 9 114140944 114140944 G C KIAA0368 Silent p.L1468L 0.26 TCGA-EA-A439-01 9 126143251 126143251 G A DENND1A 3'UTR 0.50 TCGA-EA-A439-01 9 126143253 126143253 G A DENND1A 3'UTR 0.56 TCGA-EA-A439-01 9 135929829 135929829 G A GTF3C5 Silent p.K341K 0.48 TCGA-EA-A439-01 9 96320130 96320130 G C FAM120A Missense_Mutation p.E836Q 0.24 deleterious(0) possibly_damaging(0.559) TCGA-EA-A439-01 X 100878176 100878176 G A ARMCX3 5'UTR 0.18 TCGA-EA-A439-01 X 10181774 10181774 G A CLCN4 Missense_Mutation p.G544R 0.18 deleterious(0) probably_damaging(1) TCGA-EA-A439-01 X 109696640 109696640 C A RGAG1 Missense_Mutation p.A932D 0.24 tolerated(0.12) possibly_damaging(0.894) TCGA-EA-A439-01 X 119760183 119760183 C A C1GALT1C1 Missense_Mutation p.G280V 0.12 deleterious(0.04) probably_damaging(0.987) TCGA-EA-A439-01 X 12734605 12734605 A T FRMPD4 Missense_Mutation p.D676V 0.39 deleterious_low_confidence(0) benign(0.355) TCGA-EA-A439-01 X 152615238 152615238 C T ZNF275 3'UTR 0.19 TCGA-EA-A439-01 X 17743568 17743568 G C NHS Missense_Mutation p.E427Q 0.44 tolerated(0.15) probably_damaging(0.997) TCGA-EA-A439-01 X 24552121 24552121 G A PDK3 Missense_Mutation p.E385K 0.33 tolerated(0.16) benign(0.004) TCGA-EA-A439-01 X 34962465 34962465 C G FAM47B Nonsense_Mutation p.S506* 0.15 TCGA-EA-A439-01 X 41075524 41075524 G A USP9X Missense_Mutation p.D1902N 0.17 deleterious(0) probably_damaging(0.997) TCGA-EA-A439-01 X 68836268 68836268 G A EDA Missense_Mutation p.S39N 0.10 tolerated_low_confidence(0.19) unknown(0) TCGA-EA-A439-01 X 73740862 73740862 C G SLC16A2 Missense_Mutation p.F156L 0.45 tolerated(0.19) benign(0.038) TCGA-EA-A439-01 X 73751279 73751279 T C SLC16A2 Missense_Mutation p.M504T 0.09 tolerated(0.59) benign(0.017) TCGA-EA-A439-01 X 84526709 84526709 C T ZNF711 Nonsense_Mutation p.R721* 0.16 TCGA-EA-A43B-01 10 102789795 102789795 G A PDZD7 Missense_Mutation p.S61L 0.09 deleterious(0.01) benign(0.14) TCGA-EA-A43B-01 10 129905388 129905388 C G MKI67 Missense_Mutation p.K1572N 0.06 tolerated(0.06) probably_damaging(0.936) TCGA-EA-A43B-01 10 131565154 131565154 G C MGMT Missense_Mutation p.G204R 0.32 deleterious(0.02) probably_damaging(1) TCGA-EA-A43B-01 10 135020478 135020478 G A KNDC1 Intron 0.40 TCGA-EA-A43B-01 10 26417425 26417425 A G MYO3A Silent p.Q740Q 0.17 TCGA-EA-A43B-01 10 29698580 29698580 C G PTCHD3P1 RNA 0.07 TCGA-EA-A43B-01 10 29822309 29822309 C G SVIL Missense_Mutation p.Q329H 0.11 tolerated(0.06) benign(0.02) TCGA-EA-A43B-01 10 47668656 47668656 G A ANTXRL Silent p.R200R 0.19 TCGA-EA-A43B-01 10 48388081 48388081 G A RBP3 Silent p.L933L 0.25 TCGA-EA-A43B-01 10 56089395 56089395 A G PCDH15 Silent p.Y222Y 0.32 TCGA-EA-A43B-01 10 69970496 69970496 C G MYPN 3'UTR 0.08 TCGA-EA-A43B-01 10 70136674 70136674 G A RUFY2 Silent p.L456L 0.09 TCGA-EA-A43B-01 10 90353745 90353745 C G LIPJ Missense_Mutation p.S58C 0.15 deleterious(0) probably_damaging(0.954) TCGA-EA-A43B-01 11 112064599 112064599 C T BCO2 Intron 0.33 TCGA-EA-A43B-01 11 118965872 118965872 C G H2AFX Missense_Mutation p.R78P 0.09 deleterious_low_confidence(0.04) benign(0.397) TCGA-EA-A43B-01 11 119533101 119533101 G A PVRL1 3'UTR 0.12 TCGA-EA-A43B-01 11 56344838 56344838 C G OR5M10 Missense_Mutation p.L120F 0.26 tolerated(0.28) possibly_damaging(0.846) TCGA-EA-A43B-01 11 58295017 58295017 G A LPXN Silent p.F362F 0.11 TCGA-EA-A43B-01 11 63585350 63585350 G A C11orf84 Silent p.P67P 0.23 TCGA-EA-A43B-01 12 108685663 108685663 C T CMKLR1 Missense_Mutation p.M359I 0.06 tolerated(0.2) benign(0.001) TCGA-EA-A43B-01 12 109877536 109877536 C T MYO1H Missense_Mutation p.H783Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-EA-A43B-01 12 122989787 122989787 G A RSRC2 3'UTR 0.16 TCGA-EA-A43B-01 12 123459828 123459828 C T OGFOD2 Intron 0.15 TCGA-EA-A43B-01 12 124323149 124323149 C T DNAH10 Silent p.F1565F 0.08 TCGA-EA-A43B-01 12 125432666 125432666 C T DHX37 Missense_Mutation p.E1118K 0.12 tolerated(0.07) benign(0.065) TCGA-EA-A43B-01 12 21624448 21624448 C T RECQL Silent p.L527L 0.12 TCGA-EA-A43B-01 12 32906904 32906904 G C YARS2 Missense_Mutation p.P299A 0.14 tolerated(0.1) benign(0.178) TCGA-EA-A43B-01 12 40699758 40699758 G C LRRK2 Missense_Mutation p.D1317H 0.11 deleterious(0) probably_damaging(0.999) TCGA-EA-A43B-01 12 42554409 42554409 C T YAF2 Silent p.L199L 0.06 TCGA-EA-A43B-01 12 51442167 51442167 C G LETMD1 Missense_Mutation p.R10G 0.11 deleterious_low_confidence(0.01) benign(0.422) TCGA-EA-A43B-01 12 51901264 51901264 C A SLC4A8 3'UTR 0.08 TCGA-EA-A43B-01 12 52844366 52844366 G C KRT6B Silent p.T193T 0.06 TCGA-EA-A43B-01 12 53687103 53687103 G C ESPL1 Missense_Mutation p.D2070H 0.13 deleterious(0) probably_damaging(1) TCGA-EA-A43B-01 12 54960780 54960780 T C PDE1B Silent p.L46L 0.17 TCGA-EA-A43B-01 12 55688147 55688147 G C OR6C6 Silent p.L290L 0.06 TCGA-EA-A43B-01 12 93157830 93157830 C G PLEKHG7 Nonsense_Mutation p.S265* 0.08 TCGA-EA-A43B-01 13 103385001 103385001 C T CCDC168 Missense_Mutation p.E1387K 0.07 tolerated(0.12) unknown(0) TCGA-EA-A43B-01 13 35745436 35745436 C G NBEA Missense_Mutation p.Q1424E 0.10 deleterious(0.03) benign(0.241) TCGA-EA-A43B-01 13 39264032 39264032 G C FREM2 Missense_Mutation p.E851Q 0.10 tolerated(0.1) benign(0.053) TCGA-EA-A43B-01 13 50594471 50594471 G C KCNRG Missense_Mutation p.E234Q 0.39 deleterious(0.03) benign(0.393) TCGA-EA-A43B-01 13 61987728 61987728 G A PCDH20 Silent p.I168I 0.47 TCGA-EA-A43B-01 14 101347453 101347453 C T RTL1 Missense_Mutation p.V1225I 0.18 tolerated_low_confidence(0.25) benign(0.008) TCGA-EA-A43B-01 14 102392198 102392198 G A PPP2R5C 3'UTR 0.09 TCGA-EA-A43B-01 14 102393739 102393739 C G PPP2R5C 3'UTR 0.11 TCGA-EA-A43B-01 14 102506619 102506619 G C DYNC1H1 Missense_Mutation p.E3913Q 0.07 benign(0.091) TCGA-EA-A43B-01 14 20612227 20612227 G C OR4N5 Missense_Mutation p.E111D 0.09 tolerated(0.12) probably_damaging(0.997) TCGA-EA-A43B-01 14 24806294 24806294 G A RIPK3 Nonsense_Mutation p.Q425* 0.08 TCGA-EA-A43B-01 14 37180649 37180649 C G SLC25A21 Missense_Mutation p.K159N 0.06 tolerated(0.08) benign(0.018) TCGA-EA-A43B-01 14 39763234 39763234 C G CTAGE5 Missense_Mutation p.L181V 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-EA-A43B-01 14 45465012 45465012 G A FAM179B Missense_Mutation p.D704N 0.16 deleterious(0) probably_damaging(0.942) TCGA-EA-A43B-01 14 47343356 47343356 G C MDGA2 Missense_Mutation p.Q829E 0.10 deleterious(0) probably_damaging(0.979) TCGA-EA-A43B-01 14 50910698 50910698 C G MAP4K5 Missense_Mutation p.A466P 0.04 tolerated(1) benign(0.001) TCGA-EA-A43B-01 14 71489920 71489920 G T PCNX Missense_Mutation p.V1052F 0.11 deleterious(0) probably_damaging(0.969) TCGA-EA-A43B-01 14 80664102 80664102 G C DIO2 3'Flank 0.06 TCGA-EA-A43B-01 15 25442572 25442572 G A SNORD115-14 3'Flank 0.11 TCGA-EA-A43B-01 15 54817750 54817750 G C UNC13C Missense_Mutation p.D1821H 0.11 deleterious_low_confidence(0.02) probably_damaging(0.94) TCGA-EA-A43B-01 15 55647174 55647174 G A PIGB Missense_Mutation p.E506K 0.07 tolerated(1) benign(0.001) TCGA-EA-A43B-01 15 65620511 65620511 G C IGDCC3 3'UTR 0.19 TCGA-EA-A43B-01 15 75982881 75982881 G C CSPG4 Silent p.L175L 0.05 TCGA-EA-A43B-01 16 11066827 11066827 G A CLEC16A Missense_Mutation p.D213N 0.09 deleterious(0.05) benign(0.118) TCGA-EA-A43B-01 16 18586122 18586122 G A RP11-457I16.2 5'Flank 0.12 TCGA-EA-A43B-01 16 18882759 18882759 C A SMG1 Missense_Mutation p.K743N 0.07 tolerated(0.3) possibly_damaging(0.688) TCGA-EA-A43B-01 16 19074036 19074036 G C TMC7 3'UTR 0.11 TCGA-EA-A43B-01 16 2111884 2111884 C A TSC2 Missense_Mutation p.P378T 0.26 tolerated(0.15) benign(0.063) TCGA-EA-A43B-01 16 21416240 21416240 G A NPIPB3 Silent p.L156L 0.05 TCGA-EA-A43B-01 16 239397 239397 C G LUC7L Intron 0.07 TCGA-EA-A43B-01 16 48576804 48576804 C T N4BP1 3'UTR 0.11 TCGA-EA-A43B-01 16 70295043 70295043 C A AARS Silent p.V563V 0.11 TCGA-EA-A43B-01 16 81077445 81077445 G C ATMIN Missense_Mutation p.D448H 0.09 deleterious(0.03) possibly_damaging(0.519) TCGA-EA-A43B-01 16 81077959 81077959 G A ATMIN Missense_Mutation p.G619E 0.11 deleterious(0.05) possibly_damaging(0.806) TCGA-EA-A43B-01 16 81180949 81180949 C A PKD1L2 RNA 0.10 TCGA-EA-A43B-01 17 20109165 20109165 C G SPECC1 Silent p.L601L 0.10 TCGA-EA-A43B-01 17 21092138 21092138 C T DHRS7B Missense_Mutation p.S245F 0.08 deleterious(0) probably_damaging(0.993) TCGA-EA-A43B-01 17 26575172 26575172 C G CTD-2008P7.8 5'Flank 0.17 TCGA-EA-A43B-01 17 27182130 27182130 G C ERAL1 Silent p.A26A 0.19 TCGA-EA-A43B-01 17 27613976 27613976 C G NUFIP2 Missense_Mutation p.D346H 0.08 deleterious(0) probably_damaging(0.999) TCGA-EA-A43B-01 17 33977727 33977727 C T AP2B1 Missense_Mutation p.S572F 0.06 deleterious(0) probably_damaging(0.988) TCGA-EA-A43B-01 17 37371404 37371404 G T STAC2 Missense_Mutation p.F222L 0.26 tolerated(0.3) benign(0.005) TCGA-EA-A43B-01 17 38421118 38421118 C G WIPF2 Silent p.V230V 0.11 TCGA-EA-A43B-01 17 38976838 38976838 C T KRT10 Silent p.L264L 0.11 TCGA-EA-A43B-01 17 39680032 39680033 TC - KRT19 Frame_Shift_Del p.D389Sfs*48 0.21 TCGA-EA-A43B-01 17 45822356 45822356 C G TBX21 Missense_Mutation p.S411C 0.08 deleterious(0.04) possibly_damaging(0.498) TCGA-EA-A43B-01 17 48829586 48829586 G C LUC7L3 3'UTR 0.16 TCGA-EA-A43B-01 17 5084841 5084841 C A ZNF594 3'UTR 0.09 TCGA-EA-A43B-01 17 5084876 5084876 C G ZNF594 3'UTR 0.06 TCGA-EA-A43B-01 17 56650643 56650643 G C TEX14 Missense_Mutation p.S1183C 0.11 deleterious(0) probably_damaging(0.98) TCGA-EA-A43B-01 17 56774163 56774163 C G RAD51C Missense_Mutation p.L172V 0.05 tolerated(0.07) benign(0.021) TCGA-EA-A43B-01 17 63007626 63007626 C G GNA13 3'UTR 0.17 TCGA-EA-A43B-01 17 76354877 76354878 - C SOCS3 Frame_Shift_Ins p.S101Qfs*42 0.39 TCGA-EA-A43B-01 17 8171985 8171985 G A PFAS Missense_Mutation p.D1173N 0.12 tolerated(0.38) benign(0.003) TCGA-EA-A43B-01 18 13387562 13387562 G A LDLRAD4 5'UTR 0.38 TCGA-EA-A43B-01 18 19418375 19418375 G A MIB1 Missense_Mutation p.E627K 0.10 tolerated(0.05) probably_damaging(0.988) TCGA-EA-A43B-01 18 8296421 8296421 G C PTPRM Missense_Mutation p.R937T 0.12 deleterious(0.01) probably_damaging(0.936) TCGA-EA-A43B-01 19 10655726 10655726 C T ATG4D Missense_Mutation p.S138L 0.10 deleterious(0.03) benign(0.007) TCGA-EA-A43B-01 19 1090909 1090909 C T POLR2E Missense_Mutation p.E143K 0.08 tolerated(0.71) benign(0.223) TCGA-EA-A43B-01 19 11200196 11200196 C G LDLR 5'UTR 0.10 TCGA-EA-A43B-01 19 11649791 11649791 G A CNN1 Missense_Mutation p.E17K 0.06 tolerated(0.1) benign(0.023) TCGA-EA-A43B-01 19 15224540 15224540 C T SYDE1 Silent p.C658C 0.18 TCGA-EA-A43B-01 19 17305933 17305933 G C MYO9B Missense_Mutation p.E1233Q 0.07 tolerated(0.27) benign(0.087) TCGA-EA-A43B-01 19 18561338 18561338 C G ELL Missense_Mutation p.D472H 0.09 deleterious(0.05) benign(0.002) TCGA-EA-A43B-01 19 18572462 18572462 C G ELL Missense_Mutation p.E224Q 0.12 deleterious(0) probably_damaging(1) TCGA-EA-A43B-01 19 19337411 19337411 G A NCAN Missense_Mutation p.E397K 0.08 tolerated(0.15) benign(0.007) TCGA-EA-A43B-01 19 32954789 32954789 G C DPY19L3 Missense_Mutation p.W487S 0.07 deleterious(0) probably_damaging(1) TCGA-EA-A43B-01 19 36018033 36018033 T A SBSN Missense_Mutation p.E384V 0.05 deleterious(0) benign(0.047) TCGA-EA-A43B-01 19 36018034 36018034 C G SBSN Missense_Mutation p.E384Q 0.05 tolerated(0.06) benign(0.068) TCGA-EA-A43B-01 19 38600980 38600980 C T SIPA1L3 Silent p.I749I 0.09 TCGA-EA-A43B-01 19 40581112 40581112 C T ZNF780A Missense_Mutation p.G414S 0.07 deleterious(0.01) possibly_damaging(0.749) TCGA-EA-A43B-01 19 41120238 41120238 G C LTBP4 Missense_Mutation p.E967Q 0.13 tolerated(0.06) probably_damaging(0.984) TCGA-EA-A43B-01 19 41518301 41518301 G A CYP2B6 Missense_Mutation p.E355K 0.09 deleterious(0) possibly_damaging(0.841) TCGA-EA-A43B-01 19 46815449 46815449 G C HIF3A Missense_Mutation p.D268H 0.12 deleterious(0) probably_damaging(0.998) TCGA-EA-A43B-01 19 47424220 47424220 G A ARHGAP35 Missense_Mutation p.R763H 0.07 tolerated(0.69) probably_damaging(0.999) TCGA-EA-A43B-01 19 48305209 48305209 G A TPRX1 Silent p.F353F 0.13 TCGA-EA-A43B-01 19 48637316 48637316 G A LIG1 Missense_Mutation p.P511S 0.06 deleterious(0) probably_damaging(1) TCGA-EA-A43B-01 19 51534101 51534101 C T KLK12 Silent p.G178G 0.07 TCGA-EA-A43B-01 19 52941496 52941496 G C ZNF534 Missense_Mutation p.Q274H 0.35 tolerated(0.25) benign(0.001) TCGA-EA-A43B-01 19 55815948 55815948 G A BRSK1 Silent p.P459P 0.12 TCGA-EA-A43B-01 19 58982741 58982741 C T ZNF324 Silent p.F294F 0.07 TCGA-EA-A43B-01 1 110453559 110453559 C A CSF1 5'UTR 0.21 TCGA-EA-A43B-01 1 111059941 111059941 C G KCNA10 Missense_Mutation p.R490T 0.09 tolerated_low_confidence(0.16) benign(0.001) TCGA-EA-A43B-01 1 11126779 11126779 C G EXOSC10 Missense_Mutation p.R885T 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EA-A43B-01 1 119466153 119466153 G A TBX15 Missense_Mutation p.S150L 0.07 tolerated(0.06) benign(0.239) TCGA-EA-A43B-01 1 1273811 1273811 C T DVL1 Missense_Mutation p.D424N 0.09 tolerated(0.05) probably_damaging(0.981) TCGA-EA-A43B-01 1 151150621 151150621 T A VPS72 Missense_Mutation p.E188V 0.11 deleterious(0.03) benign(0.394) TCGA-EA-A43B-01 1 151150622 151150622 C T VPS72 Splice_Site p.X188_splice 0.11 TCGA-EA-A43B-01 1 151220422 151220422 G C PIP5K1A 3'Flank 0.14 TCGA-EA-A43B-01 1 151341609 151341609 C T SELENBP1 Nonsense_Mutation p.W77* 0.07 TCGA-EA-A43B-01 1 151641005 151641005 C T SNX27 Missense_Mutation p.S348L 0.12 deleterious(0) possibly_damaging(0.742) TCGA-EA-A43B-01 1 151735518 151735518 C A MRPL9 Silent p.T86T 0.10 TCGA-EA-A43B-01 1 158325963 158325963 G C CD1E Intron 0.06 TCGA-EA-A43B-01 1 159847166 159847166 C G CCDC19 Missense_Mutation p.E377D 0.08 deleterious(0.03) probably_damaging(0.957) TCGA-EA-A43B-01 1 161043069 161043069 C G PVRL4 Silent p.L418L 0.12 TCGA-EA-A43B-01 1 167024341 167024341 C T GPA33 Missense_Mutation p.M233I 0.10 deleterious(0.01) possibly_damaging(0.718) TCGA-EA-A43B-01 1 181727095 181727095 G A CACNA1E Missense_Mutation p.D1448N 0.27 deleterious(0.03) possibly_damaging(0.555) TCGA-EA-A43B-01 1 196971786 196971786 G A CFHR5 Missense_Mutation p.R441H 0.12 tolerated(0.27) benign(0.001) TCGA-EA-A43B-01 1 201984408 201984408 C G ELF3 Nonsense_Mutation p.S358* 0.06 TCGA-EA-A43B-01 1 202863729 202863729 G C KLHL12 Missense_Mutation p.I428M 0.06 deleterious(0.01) possibly_damaging(0.596) TCGA-EA-A43B-01 1 203771246 203771246 C G ZC3H11A 5'UTR 0.28 TCGA-EA-A43B-01 1 223176653 223176653 G A DISP1 Silent p.G638G 0.38 TCGA-EA-A43B-01 1 240492451 240492451 C G FMN2 Missense_Mutation p.L1431V 0.08 probably_damaging(0.997) TCGA-EA-A43B-01 1 243437896 243437896 C T SDCCAG8 Missense_Mutation p.H120Y 0.11 deleterious(0) benign(0.134) TCGA-EA-A43B-01 1 243668529 243668529 G C AKT3 3'UTR 0.08 TCGA-EA-A43B-01 1 24668628 24668628 G C GRHL3 Silent p.L357L 0.15 TCGA-EA-A43B-01 1 246704422 246704422 G C TFB2M Missense_Mutation p.Q368E 0.08 tolerated(1) benign(0.015) TCGA-EA-A43B-01 1 25747206 25747206 G C RHCE Silent p.L24L 0.08 TCGA-EA-A43B-01 1 28527795 28527795 C T DNAJC8 Silent p.L242L 0.07 TCGA-EA-A43B-01 1 2938150 2938150 G A ACTRT2 5'UTR 0.16 TCGA-EA-A43B-01 1 32162848 32162848 C G COL16A1 Missense_Mutation p.E237D 0.12 unknown(0) TCGA-EA-A43B-01 1 32841956 32841956 C G BSDC1 Missense_Mutation p.E372Q 0.10 tolerated(0.1) benign(0.379) TCGA-EA-A43B-01 1 34677980 34677980 C T C1orf94 Missense_Mutation p.P565L 0.21 tolerated(0.19) benign(0.033) TCGA-EA-A43B-01 1 43914344 43914344 G A SZT2 Missense_Mutation p.R3287H 0.23 deleterious(0) probably_damaging(0.995) TCGA-EA-A43B-01 1 45484125 45484125 C G ZSWIM5 3'UTR 0.14 TCGA-EA-A43B-01 1 47571815 47571815 G C CYP4Z1 Missense_Mutation p.Q361H 0.09 tolerated(0.13) probably_damaging(0.934) TCGA-EA-A43B-01 1 52878201 52878201 G C PRPF38A Missense_Mutation p.E172Q 0.09 deleterious(0) probably_damaging(0.971) TCGA-EA-A43B-01 1 7826799 7826799 C A CAMTA1 3'UTR 0.12 TCGA-EA-A43B-01 1 78430367 78430367 C G FUBP1 Missense_Mutation p.E267D 0.09 tolerated(0.83) benign(0.05) TCGA-EA-A43B-01 1 89732039 89732039 G C GBP5 Silent p.V286V 0.07 TCGA-EA-A43B-01 1 99774074 99774074 G A LPPR4 3'UTR 0.43 TCGA-EA-A43B-01 20 44588976 44588976 C T ZNF335 Missense_Mutation p.E631K 0.05 tolerated(0.14) benign(0.14) TCGA-EA-A43B-01 20 50406888 50406888 G A SALL4 Missense_Mutation p.L712F 0.34 tolerated(0.24) possibly_damaging(0.787) TCGA-EA-A43B-01 20 60498707 60498707 G A CDH4 Missense_Mutation p.V525M 0.45 tolerated(0.23) benign(0.01) TCGA-EA-A43B-01 20 62045509 62045509 C G KCNQ2 Missense_Mutation p.K521N 0.10 deleterious(0) probably_damaging(0.952) TCGA-EA-A43B-01 20 62045529 62045529 C G KCNQ2 Missense_Mutation p.E515Q 0.10 deleterious(0) probably_damaging(1) TCGA-EA-A43B-01 21 34904683 34904683 C G GART Missense_Mutation p.E166Q 0.06 deleterious(0.04) benign(0.233) TCGA-EA-A43B-01 21 40550497 40550497 G C PSMG1 Nonsense_Mutation p.S178* 0.14 TCGA-EA-A43B-01 21 43231133 43231133 C G PRDM15 Missense_Mutation p.E1184Q 0.09 deleterious(0.05) possibly_damaging(0.679) TCGA-EA-A43B-01 21 43231143 43231143 C A PRDM15 Missense_Mutation p.R1180S 0.11 tolerated(0.2) benign(0.148) TCGA-EA-A43B-01 21 43531075 43531075 C T UMODL1 Silent p.L581L 0.12 TCGA-EA-A43B-01 21 45176059 45176059 C T PDXK 3'UTR 0.14 TCGA-EA-A43B-01 22 17265193 17265193 C G XKR3 Silent p.P232P 0.13 TCGA-EA-A43B-01 22 20458665 20458665 C A RIMBP3 Silent p.G879G 0.04 TCGA-EA-A43B-01 22 25580958 25580958 G C KIAA1671 Missense_Mutation p.K1738N 0.05 deleterious(0) probably_damaging(0.994) TCGA-EA-A43B-01 22 29177021 29177021 G C CCDC117 Missense_Mutation p.E109Q 0.10 tolerated(0.2) benign(0.001) TCGA-EA-A43B-01 22 29183053 29183053 G A CCDC117 3'UTR 0.10 TCGA-EA-A43B-01 22 32756308 32756308 G A RFPL3 Missense_Mutation p.R148Q 0.07 tolerated(0.2) benign(0.004) TCGA-EA-A43B-01 22 37640284 37640284 G A RAC2 5'UTR 0.22 TCGA-EA-A43B-01 22 50956041 50956041 G A NCAPH2 Missense_Mutation p.R101K 0.19 tolerated(0.12) benign(0.098) TCGA-EA-A43B-01 2 109352064 109352064 G C RANBP2 Missense_Mutation p.R161T 0.04 deleterious(0) benign(0.011) TCGA-EA-A43B-01 2 109352191 109352191 G C RANBP2 Missense_Mutation p.W203C 0.05 deleterious(0) benign(0.413) TCGA-EA-A43B-01 2 11053719 11053719 C T KCNF1 Silent p.I389I 0.10 TCGA-EA-A43B-01 2 113820168 113820168 G A IL36RN Missense_Mutation p.D128N 0.07 tolerated(0.26) possibly_damaging(0.453) TCGA-EA-A43B-01 2 114195462 114195462 G A CBWD2 Missense_Mutation p.G6E 0.05 tolerated_low_confidence(0.11) benign(0.14) TCGA-EA-A43B-01 2 11598422 11598422 G A E2F6 Intron 0.32 TCGA-EA-A43B-01 2 128381665 128381665 C T MYO7B Intron 0.11 TCGA-EA-A43B-01 2 131672143 131672143 C G ARHGEF4 5'Flank 0.10 TCGA-EA-A43B-01 2 133531434 133531434 C T NCKAP5 Missense_Mutation p.E1695K 0.09 deleterious(0.01) benign(0.322) TCGA-EA-A43B-01 2 149544261 149544261 G A EPC2 3'UTR 0.15 TCGA-EA-A43B-01 2 152394704 152394704 C T NEB Missense_Mutation p.D6983N 0.06 probably_damaging(1) TCGA-EA-A43B-01 2 162087928 162087928 C G TANK Missense_Mutation p.L323V 0.17 tolerated(0.58) benign(0.017) TCGA-EA-A43B-01 2 176982109 176982109 G A HOXD10 Missense_Mutation p.R183H 0.13 deleterious(0.04) benign(0.008) TCGA-EA-A43B-01 2 179365833 179365833 C G PLEKHA3 Silent p.L235L 0.07 TCGA-EA-A43B-01 2 179399219 179399219 C T TTN Silent p.E34041E 0.40 TCGA-EA-A43B-01 2 179437171 179437171 C G TTN Missense_Mutation p.R24563T 0.05 TCGA-EA-A43B-01 2 179495589 179495589 G C TTN Missense_Mutation p.S14699C 0.10 TCGA-EA-A43B-01 2 179585888 179585888 C T TTN Missense_Mutation p.A7620T 0.08 TCGA-EA-A43B-01 2 207425883 207425883 C G ADAM23 Missense_Mutation p.L401V 0.07 tolerated(0.37) benign(0.038) TCGA-EA-A43B-01 2 219144792 219144792 C G TMBIM1 Missense_Mutation p.G87A 0.08 tolerated(0.62) benign(0.015) TCGA-EA-A43B-01 2 220029972 220029972 G C SLC23A3 Silent p.G370G 0.63 TCGA-EA-A43B-01 2 220030095 220030095 G C SLC23A3 Missense_Mutation p.I329M 0.29 deleterious(0.02) probably_damaging(0.95) TCGA-EA-A43B-01 2 220428191 220428191 C G OBSL1 Missense_Mutation p.E856Q 0.09 tolerated(0.05) possibly_damaging(0.897) TCGA-EA-A43B-01 2 233757718 233757718 G A NGEF Silent p.V344V 0.11 TCGA-EA-A43B-01 2 233785014 233785014 C T NGEF Missense_Mutation p.E270K 0.07 tolerated(0.11) benign(0.019) TCGA-EA-A43B-01 2 27304948 27304948 C T EMILIN1 Intron 0.08 TCGA-EA-A43B-01 2 29405096 29405096 C G CLIP4 3'UTR 0.05 TCGA-EA-A43B-01 2 37455758 37455758 G C CEBPZ Missense_Mutation p.S193C 0.07 tolerated(0.06) benign(0.027) TCGA-EA-A43B-01 2 43571336 43571336 C T THADA Missense_Mutation p.G1423E 0.11 tolerated(0.29) benign(0.007) TCGA-EA-A43B-01 2 54080250 54080250 G C GPR75 3'UTR 0.07 TCGA-EA-A43B-01 2 5837509 5837509 A G SOX11 3'UTR 0.08 TCGA-EA-A43B-01 2 5839032 5839032 C G SOX11 3'UTR 0.11 TCGA-EA-A43B-01 2 65543978 65543978 C G SPRED2 Missense_Mutation p.E160Q 0.08 tolerated(0.27) benign(0.157) TCGA-EA-A43B-01 2 69709945 69709945 C G AAK1 Splice_Site p.X789_splice 0.11 TCGA-EA-A43B-01 3 123674792 123674792 C T CCDC14 Intron 0.14 TCGA-EA-A43B-01 3 128993756 128993756 G A COPG1 Missense_Mutation p.E778K 0.06 tolerated(0.19) benign(0.166) TCGA-EA-A43B-01 3 136078012 136078012 C T STAG1 Missense_Mutation p.E972K 0.08 deleterious(0) probably_damaging(0.945) TCGA-EA-A43B-01 3 158541220 158541220 C G MFSD1 Missense_Mutation p.L410V 0.08 tolerated(0.38) benign(0.03) TCGA-EA-A43B-01 3 164697010 164697010 C T SI 3'UTR 0.19 TCGA-EA-A43B-01 3 164741481 164741481 G A SI Silent p.S992S 0.09 TCGA-EA-A43B-01 3 172634172 172634172 G C SPATA16 Missense_Mutation p.Q480E 0.10 deleterious(0) benign(0.092) TCGA-EA-A43B-01 3 19492764 19492764 C G KCNH8 Missense_Mutation p.L565V 0.05 tolerated(0.05) probably_damaging(0.943) TCGA-EA-A43B-01 3 42708360 42708360 G A ZBTB47 3'Flank 0.21 TCGA-EA-A43B-01 3 48205831 48205831 G A CDC25A Missense_Mutation p.H430Y 0.07 deleterious(0.01) probably_damaging(1) TCGA-EA-A43B-01 3 48884906 48884906 C T PRKAR2A Missense_Mutation p.E42K 0.09 tolerated(0.11) benign(0.254) TCGA-EA-A43B-01 3 52437178 52437178 C G BAP1 Missense_Mutation p.L622F 0.08 tolerated(0.7) benign(0.044) TCGA-EA-A43B-01 3 52582190 52582190 C T PBRM1 Silent p.L1546L 0.09 TCGA-EA-A43B-01 3 53321594 53321594 C T DCP1A 3'UTR 0.10 TCGA-EA-A43B-01 3 57293876 57293876 C G APPL1 Missense_Mutation p.S496C 0.06 deleterious(0) probably_damaging(0.972) TCGA-EA-A43B-01 4 103717443 103717443 A C UBE2D3 3'Flank 0.16 TCGA-EA-A43B-01 4 155507428 155507428 G A FGA Nonsense_Mutation p.Q385* 0.08 TCGA-EA-A43B-01 4 156276946 156276946 T G MAP9 Missense_Mutation p.K404N 0.22 deleterious(0) probably_damaging(0.947) TCGA-EA-A43B-01 4 15692014 15692014 G A FAM200B 3'Flank 0.19 TCGA-EA-A43B-01 4 657639 657639 G A PDE6B Silent p.T667T 0.13 TCGA-EA-A43B-01 4 668037 668037 C G MYL5 5'Flank 0.18 TCGA-EA-A43B-01 4 69203328 69203328 C T YTHDC1 Missense_Mutation p.E141K 0.07 deleterious_low_confidence(0.02) unknown(0) TCGA-EA-A43B-01 4 758843 758843 G T PCGF3 Missense_Mutation p.W224C 0.21 tolerated(0.05) probably_damaging(1) TCGA-EA-A43B-01 4 8239286 8239286 C G SH3TC1 Missense_Mutation p.F1214L 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-EA-A43B-01 5 10250671 10250671 G C CCT5 Intron 0.08 TCGA-EA-A43B-01 5 112350903 112350903 C T DCP2 3'UTR 0.45 TCGA-EA-A43B-01 5 140182427 140182427 G A PCDHA3 Missense_Mutation p.V549M 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.828) TCGA-EA-A43B-01 5 141243774 141243774 C T PCDH1 Missense_Mutation p.E708K 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-EA-A43B-01 5 150071190 150071190 C G RBM22 3'UTR 0.25 TCGA-EA-A43B-01 5 32074552 32074552 C T PDZD2 Silent p.L1114L 0.07 TCGA-EA-A43B-01 5 37036506 37036506 C T NIPBL Missense_Mutation p.S1963L 0.07 tolerated(0.06) possibly_damaging(0.512) TCGA-EA-A43B-01 5 37224777 37224777 C G C5orf42 Missense_Mutation p.R786T 0.06 deleterious(0.03) benign(0.074) TCGA-EA-A43B-01 5 59940689 59940689 G A DEPDC1B Missense_Mutation p.L198F 0.13 deleterious(0) benign(0.157) TCGA-EA-A43B-01 5 65339981 65339981 G A ERBB2IP Missense_Mutation p.R482K 0.11 deleterious(0) probably_damaging(0.992) TCGA-EA-A43B-01 5 89781433 89781433 G C POLR3G Missense_Mutation p.E17Q 0.10 tolerated(0.05) probably_damaging(0.961) TCGA-EA-A43B-01 6 105607617 105607617 G A POPDC3 Missense_Mutation p.S188L 0.12 deleterious(0) probably_damaging(0.999) TCGA-EA-A43B-01 6 105607618 105607618 A T POPDC3 Missense_Mutation p.S188T 0.12 deleterious(0) probably_damaging(0.998) TCGA-EA-A43B-01 6 127608557 127608557 G C RNF146 Missense_Mutation p.E267Q 0.19 tolerated(0.11) benign(0.241) TCGA-EA-A43B-01 6 161491817 161491817 G C MAP3K4 Missense_Mutation p.E629Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-EA-A43B-01 6 166580885 166580885 G C T Silent p.T65T 0.15 TCGA-EA-A43B-01 6 168370499 168370499 G A MLLT4 Missense_Mutation p.E276K 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EA-A43B-01 6 30234675 30234675 G C HCG17 Intron 0.04 TCGA-EA-A43B-01 6 31322276 31322283 ACATCAGA - HLA-B Frame_Shift_Del p.S356Vfs*41 0.25 TCGA-EA-A43B-01 6 31864229 31864229 C T EHMT2 Silent p.K131K 0.10 TCGA-EA-A43B-01 6 31868878 31868878 C T ZBTB12 Missense_Mutation p.E69K 0.07 tolerated(0.34) possibly_damaging(0.621) TCGA-EA-A43B-01 6 32014167 32014167 G C TNXB 5'Flank 0.07 TCGA-EA-A43B-01 6 32083681 32083681 G C ATF6B Silent p.V649V 0.09 TCGA-EA-A43B-01 6 34831951 34831951 A T UHRF1BP1 Missense_Mutation p.S1130C 0.16 deleterious(0.01) possibly_damaging(0.664) TCGA-EA-A43B-01 6 37142731 37142731 G A PIM1 3'UTR 0.10 TCGA-EA-A43B-01 6 46821772 46821772 G A GPR116 Missense_Mutation p.S1333L 0.05 deleterious(0) unknown(0) TCGA-EA-A43B-01 6 70992686 70992686 G C COL9A1 Intron 0.07 TCGA-EA-A43B-01 7 103969452 103969452 C G LHFPL3 Silent p.L75L 0.09 TCGA-EA-A43B-01 7 121960201 121960201 C G CADPS2 3'UTR 0.11 TCGA-EA-A43B-01 7 128637526 128637526 C T TNPO3 Missense_Mutation p.E359K 0.08 tolerated(0.48) benign(0.004) TCGA-EA-A43B-01 7 130027834 130027834 C A CPA1 Silent p.T414T 0.08 TCGA-EA-A43B-01 7 142723557 142723557 G C OR9A2 Missense_Mutation p.I221M 0.09 deleterious(0.01) probably_damaging(0.973) TCGA-EA-A43B-01 7 142997036 142997036 G A CASP2 Silent p.Q256Q 0.11 TCGA-EA-A43B-01 7 143175013 143175013 G A TAS2R41 Silent p.L16L 0.06 TCGA-EA-A43B-01 7 143826248 143826248 C T OR2A14 Nonsense_Mutation p.R15* 0.18 TCGA-EA-A43B-01 7 146997236 146997236 C T CNTNAP2 Missense_Mutation p.S451F 0.10 deleterious(0.05) benign(0.082) TCGA-EA-A43B-01 7 16901655 16901655 C G AGR3 Missense_Mutation p.E86Q 0.09 deleterious(0.04) possibly_damaging(0.728) TCGA-EA-A43B-01 7 1855475 1855475 G C MAD1L1 3'UTR 0.11 TCGA-EA-A43B-01 7 38356766 38356766 G A TRGV9 Missense_Mutation p.S73L 0.10 tolerated(0.68) benign(0.137) TCGA-EA-A43B-01 7 42001087 42001087 G A GLI3 3'UTR 0.43 TCGA-EA-A43B-01 7 62752248 62752248 C G ZNF733P RNA 0.18 TCGA-EA-A43B-01 7 73530278 73530278 G C LIMK1 Missense_Mutation p.E519D 0.10 deleterious(0) probably_damaging(0.999) TCGA-EA-A43B-01 7 75633094 75633094 G T STYXL1 Missense_Mutation p.H227N 0.12 tolerated(0.35) benign(0.043) TCGA-EA-A43B-01 7 77647632 77647632 C G MAGI2 3'UTR 0.22 TCGA-EA-A43B-01 7 87329835 87329835 G C RUNDC3B Missense_Mutation p.E130Q 0.08 deleterious(0) probably_damaging(0.965) TCGA-EA-A43B-01 7 97922788 97922788 G A BAIAP2L1 3'UTR 0.12 TCGA-EA-A43B-01 7 99918560 99918560 C G SPDYE3 3'UTR 0.06 TCGA-EA-A43B-01 8 104897995 104897995 C G RIMS2 Missense_Mutation p.R390G 0.07 tolerated_low_confidence(0.08) probably_damaging(0.977) TCGA-EA-A43B-01 8 118173976 118173976 G A SLC30A8 Splice_Site p.X191_splice 0.07 TCGA-EA-A43B-01 8 11995043 11995043 C G USP17L2 Missense_Mutation p.K409N 0.07 tolerated(0.28) benign(0.061) TCGA-EA-A43B-01 8 145659544 145659544 C T TONSL Silent p.L1068L 0.09 TCGA-EA-A43B-01 8 145998848 145998848 G A ZNF34 Silent p.L496L 0.12 TCGA-EA-A43B-01 8 22085783 22085783 C T PHYHIP Missense_Mutation p.D30N 0.13 tolerated(0.16) benign(0.029) TCGA-EA-A43B-01 8 28980966 28980966 C T KIF13B Silent p.E1132E 0.09 TCGA-EA-A43B-01 8 49642371 49642371 G A EFCAB1 Missense_Mutation p.H127Y 0.11 tolerated(0.48) benign(0.051) TCGA-EA-A43B-01 8 6728310 6728310 G C DEFB1 Missense_Mutation p.H34D 0.08 tolerated(0.12) possibly_damaging(0.803) TCGA-EA-A43B-01 8 71593475 71593475 C A XKR9 Missense_Mutation p.S61Y 0.13 deleterious(0.02) possibly_damaging(0.801) TCGA-EA-A43B-01 9 114989809 114989809 C G PTBP3 Missense_Mutation p.D450H 0.09 deleterious(0) benign(0.222) TCGA-EA-A43B-01 9 123626356 123626356 G A PHF19 Silent p.L313L 0.06 TCGA-EA-A43B-01 9 125273111 125273111 G C OR1J2 Missense_Mutation p.E11Q 0.16 tolerated_low_confidence(0.15) benign(0.142) TCGA-EA-A43B-01 9 139370924 139370924 C G SEC16A Missense_Mutation p.E382Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-EA-A43B-01 9 139371510 139371510 C T SEC16A Silent p.L186L 0.23 TCGA-EA-A43B-01 9 139818343 139818343 G A TRAF2 Missense_Mutation p.R393H 0.37 deleterious(0) possibly_damaging(0.873) TCGA-EA-A43B-01 9 178889 178889 C G CBWD1 Silent p.T27T 0.08 TCGA-EA-A43B-01 9 33280921 33280921 C G CHMP5 3'UTR 0.12 TCGA-EA-A43B-01 9 37785042 37785042 C T EXOSC3 5'UTR 0.08 TCGA-EA-A43B-01 9 43627712 43627712 C G SPATA31A6 Missense_Mutation p.Q325H 0.10 deleterious(0) probably_damaging(0.994) TCGA-EA-A43B-01 9 97822982 97822982 C T C9orf3 Missense_Mutation p.P708S 0.18 tolerated(0.28) possibly_damaging(0.581) TCGA-EA-A43B-01 X 100603704 100603704 C T TIMM8A 5'UTR 0.26 TCGA-EA-A43B-01 X 107414135 107414135 C T COL4A6 Missense_Mutation p.R1098K 0.25 benign(0.023) TCGA-EA-A43B-01 X 12735653 12735653 C G FRMPD4 Missense_Mutation p.S903C 0.07 deleterious(0) probably_damaging(0.999) TCGA-EA-A43B-01 X 152853771 152853771 C A FAM58A 3'UTR 0.08 TCGA-EA-A43B-01 X 153940975 153940975 G C GAB3 Missense_Mutation p.L200V 0.14 tolerated(0.15) benign(0.009) TCGA-EA-A43B-01 X 17744187 17744187 C T NHS Missense_Mutation p.S633F 0.10 deleterious(0) probably_damaging(0.999) TCGA-EA-A43B-01 X 49087754 49087754 G C CACNA1F Silent p.L97L 0.09 TCGA-EA-A43B-01 X 64738311 64738311 C T LAS1L Missense_Mutation p.E495K 0.14 tolerated(0.13) possibly_damaging(0.517) TCGA-EA-A43B-01 X 70683738 70683738 G A TAF1 Missense_Mutation p.G1842S 0.28 tolerated_low_confidence(0.25) possibly_damaging(0.675) TCGA-EA-A43B-01 X 73041247 73041247 G C XIST RNA 0.10 TCGA-EA-A43B-01 X 78010489 78010489 C G LPAR4 Silent p.L41L 0.11 TCGA-EA-A5FO-01 10 104913048 104913048 C A NT5C2 Intron 0.92 TCGA-EA-A5FO-01 10 105063279 105063279 T C PCGF6 3'UTR 0.84 TCGA-EA-A5FO-01 10 118231381 118231381 G T PNLIPRP3 Missense_Mutation p.A388S 0.90 tolerated(0.06) benign(0.004) TCGA-EA-A5FO-01 10 123274794 123274794 T C FGFR2 Missense_Mutation p.Y376C 0.97 deleterious(0) probably_damaging(0.967) TCGA-EA-A5FO-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.95 TCGA-EA-A5FO-01 11 111487074 111487074 A T SIK2 Missense_Mutation p.K81N 0.45 deleterious(0) probably_damaging(1) TCGA-EA-A5FO-01 11 115375115 115375115 C T CADM1 5'UTR 0.31 TCGA-EA-A5FO-01 11 17408655 17408655 C T KCNJ11 Silent p.V328V 0.48 TCGA-EA-A5FO-01 11 47283254 47283254 C T NR1H3 Silent p.L289L 0.54 TCGA-EA-A5FO-01 11 51411741 51411741 G C OR4A5 Missense_Mutation p.L219V 0.38 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-EA-A5FO-01 11 51412303 51412303 G C OR4A5 Silent p.L31L 0.42 TCGA-EA-A5FO-01 11 56510605 56510605 G T OR9G4 Missense_Mutation p.A228D 0.55 deleterious(0.02) probably_damaging(0.922) TCGA-EA-A5FO-01 11 62462159 62462159 G A BSCL2 Missense_Mutation p.R171C 0.30 deleterious(0) probably_damaging(0.997) TCGA-EA-A5FO-01 11 63992435 63992435 G A TRPT1 Silent p.F55F 0.40 TCGA-EA-A5FO-01 11 9457893 9457893 A G IPO7 Missense_Mutation p.K750E 0.42 deleterious(0.01) possibly_damaging(0.781) TCGA-EA-A5FO-01 12 104382100 104382100 C T TDG 3'UTR 0.12 TCGA-EA-A5FO-01 12 109719560 109719560 G A FOXN4 Missense_Mutation p.R316C 0.41 deleterious(0.02) benign(0.046) TCGA-EA-A5FO-01 12 133219510 133219510 C A POLE Missense_Mutation p.G1542C 0.52 deleterious(0.01) possibly_damaging(0.838) TCGA-EA-A5FO-01 12 40916808 40916808 G A MUC19 Intron 0.38 TCGA-EA-A5FO-01 12 49167273 49167273 A T ADCY6 Missense_Mutation p.L867Q 0.38 tolerated(0.08) benign(0.037) TCGA-EA-A5FO-01 12 50524261 50524261 G A CERS5 3'UTR 0.40 TCGA-EA-A5FO-01 12 53803312 53803312 G A SP1 Missense_Mutation p.D671N 0.49 deleterious(0.01) benign(0.002) TCGA-EA-A5FO-01 12 54333151 54333151 C T HOXC13 Missense_Mutation p.P154L 0.58 tolerated(0.34) benign(0.121) TCGA-EA-A5FO-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.45 deleterious(0.05) possibly_damaging(0.789) TCGA-EA-A5FO-01 12 939216 939216 G A WNK1 Missense_Mutation p.E401K 0.38 deleterious(0) unknown(0) TCGA-EA-A5FO-01 14 23312944 23312944 G A MMP14 Silent p.K292K 0.43 TCGA-EA-A5FO-01 14 37194846 37194846 C T SLC25A21 Missense_Mutation p.E123K 0.42 deleterious(0) probably_damaging(1) TCGA-EA-A5FO-01 14 38723786 38723786 G A CLEC14A Missense_Mutation p.A481V 0.43 tolerated_low_confidence(0.16) benign(0.027) TCGA-EA-A5FO-01 14 52171610 52171610 A G FRMD6 Missense_Mutation p.H172R 0.32 deleterious(0.02) benign(0.024) TCGA-EA-A5FO-01 14 89647088 89647088 G A FOXN3 Missense_Mutation p.R292W 0.40 tolerated(0.06) benign(0.052) TCGA-EA-A5FO-01 14 94845708 94845708 G A SERPINA1 Intron 0.59 TCGA-EA-A5FO-01 15 35275294 35275294 G A ZNF770 Silent p.V114V 0.34 TCGA-EA-A5FO-01 15 59500058 59500058 G A LDHAL6B Missense_Mutation p.D307N 0.39 tolerated(0.14) possibly_damaging(0.753) TCGA-EA-A5FO-01 15 65874292 65874292 C T VWA9 Silent p.K378K 0.37 TCGA-EA-A5FO-01 15 73852915 73852915 G A NPTN 3'UTR 0.38 TCGA-EA-A5FO-01 16 28943275 28943275 C A CD19 5'UTR 0.35 TCGA-EA-A5FO-01 16 55690662 55690662 C T SLC6A2 Missense_Mutation p.T19M 0.51 tolerated(0.2) benign(0.029) TCGA-EA-A5FO-01 16 64981102 64981102 C T CDH11 3'UTR 0.43 TCGA-EA-A5FO-01 16 70514099 70514099 C T FUK 3'UTR 0.47 TCGA-EA-A5FO-01 16 76482704 76482704 C T CNTNAP4 Silent p.L236L 0.52 TCGA-EA-A5FO-01 17 15133646 15133646 C T PMP22 3'UTR 0.42 TCGA-EA-A5FO-01 17 18219721 18219721 G A SMCR8 Silent p.R206R 0.54 TCGA-EA-A5FO-01 17 29559809 29559809 C T NF1 Missense_Mutation p.R1136W 0.51 deleterious(0.01) probably_damaging(0.988) TCGA-EA-A5FO-01 17 41108566 41108566 C T AARSD1 Missense_Mutation p.R134K 0.29 tolerated(0.24) benign(0.001) TCGA-EA-A5FO-01 17 41905135 41905135 G A MPP3 Silent p.G169G 0.42 TCGA-EA-A5FO-01 17 42274681 42274681 G A ATXN7L3 Missense_Mutation p.R91C 0.39 deleterious(0.04) benign(0.316) TCGA-EA-A5FO-01 17 56435253 56435253 G A RNF43 Silent p.D628D 0.46 TCGA-EA-A5FO-01 17 7574017 7574017 C T TP53 Missense_Mutation p.R337H 0.33 tolerated(0.09) probably_damaging(0.975) TCGA-EA-A5FO-01 17 9632171 9632171 C A USP43 Missense_Mutation p.A1079D 0.48 tolerated(0.1) benign(0.063) TCGA-EA-A5FO-01 18 334982 334982 G T COLEC12 Missense_Mutation p.P526T 0.50 deleterious(0.01) unknown(0) TCGA-EA-A5FO-01 19 38995470 38995470 C T RYR1 Missense_Mutation p.A2717V 0.49 benign(0.18) TCGA-EA-A5FO-01 19 42875608 42875608 G A MEGF8 Missense_Mutation p.D2348N 0.48 deleterious(0.01) possibly_damaging(0.602) TCGA-EA-A5FO-01 19 45997641 45997641 C T RTN2 Silent p.S199S 0.49 TCGA-EA-A5FO-01 19 46285499 46285499 C T DMPK 5'Flank 0.25 TCGA-EA-A5FO-01 19 53473260 53473261 TT - ZNF702P RNA 0.31 TCGA-EA-A5FO-01 19 54418666 54418666 G A CACNG7 Missense_Mutation p.V111M 0.57 tolerated(0.41) benign(0.03) TCGA-EA-A5FO-01 1 152188861 152188861 C T HRNR Silent p.S1748S 0.25 TCGA-EA-A5FO-01 1 161599599 161599599 G A FCGR3B Silent p.L132L 0.80 TCGA-EA-A5FO-01 1 16384740 16384740 C T FAM131C 3'UTR 0.38 TCGA-EA-A5FO-01 1 173915654 173915654 T A RC3H1 Missense_Mutation p.N974I 0.48 deleterious_low_confidence(0) possibly_damaging(0.748) TCGA-EA-A5FO-01 1 22055105 22055105 C T USP48 Missense_Mutation p.E470K 0.89 tolerated(0.2) benign(0.042) TCGA-EA-A5FO-01 1 26513934 26513934 C A CNKSR1 Missense_Mutation p.P472H 0.39 deleterious(0) probably_damaging(0.992) TCGA-EA-A5FO-01 1 3624293 3624293 G T TP73 Nonsense_Mutation p.G123* 0.92 TCGA-EA-A5FO-01 1 40773118 40773118 C T COL9A2 Silent p.A336A 0.90 TCGA-EA-A5FO-01 1 9932074 9932074 G A CTNNBIP1 Nonsense_Mutation p.Q17* 0.43 TCGA-EA-A5FO-01 20 13894427 13894427 C T SEL1L2 Splice_Site p.X183_splice 0.24 TCGA-EA-A5FO-01 20 40141618 40141618 C T CHD6 Missense_Mutation p.R240K 0.32 deleterious(0.03) possibly_damaging(0.865) TCGA-EA-A5FO-01 20 40714415 40714415 C A PTPRT Missense_Mutation p.D1309Y 0.42 deleterious(0) probably_damaging(0.953) TCGA-EA-A5FO-01 20 43726320 43726320 G A KCNS1 Silent p.L365L 0.34 TCGA-EA-A5FO-01 20 43944934 43944934 G A RBPJL Silent p.A376A 0.34 TCGA-EA-A5FO-01 20 47307544 47307544 G A PREX1 Missense_Mutation p.T376M 0.59 deleterious(0) probably_damaging(0.977) TCGA-EA-A5FO-01 20 62326563 62326563 C T RTEL1 Missense_Mutation p.A1187V 0.36 tolerated_low_confidence(0.1) benign(0.096) TCGA-EA-A5FO-01 22 37330014 37330014 G A CSF2RB Silent p.A431A 0.46 TCGA-EA-A5FO-01 2 111921762 111921763 - A BCL2L11 Frame_Shift_Ins p.R185Tfs*80 0.37 TCGA-EA-A5FO-01 2 166846089 166846089 G A SCN1A 3'UTR 0.27 TCGA-EA-A5FO-01 2 233394711 233394711 C T CHRND Silent p.L228L 0.50 TCGA-EA-A5FO-01 2 31805820 31805820 C T SRD5A2 RNA 0.47 TCGA-EA-A5FO-01 2 64751617 64751617 G A AFTPH 5'UTR 0.54 TCGA-EA-A5FO-01 2 85012777 85012777 G A DNAH6 Missense_Mutation p.R3666Q 0.46 tolerated(0.07) possibly_damaging(0.903) TCGA-EA-A5FO-01 3 11058819 11058819 C T SLC6A1 5'UTR 0.47 TCGA-EA-A5FO-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.38 deleterious(0.02) probably_damaging(0.959) TCGA-EA-A5FO-01 3 194373732 194373732 G A LSG1 Missense_Mutation p.T300M 0.70 deleterious(0.02) benign(0.132) TCGA-EA-A5FO-01 3 19926048 19926048 G A EFHB Missense_Mutation p.L665F 0.43 tolerated(0.1) benign(0.009) TCGA-EA-A5FO-01 3 61975327 61975327 G A PTPRG Silent p.T73T 0.47 TCGA-EA-A5FO-01 3 88040000 88040000 C A HTR1F Missense_Mutation p.A34E 0.42 deleterious(0) possibly_damaging(0.881) TCGA-EA-A5FO-01 4 100774415 100774415 G A DAPP1 Silent p.V133V 0.43 TCGA-EA-A5FO-01 4 183722116 183722116 G A TENM3 3'UTR 0.42 TCGA-EA-A5FO-01 4 3251157 3251157 C T MSANTD1 Missense_Mutation p.R70C 0.53 deleterious(0) probably_damaging(0.984) TCGA-EA-A5FO-01 5 139947395 139947395 G A SLC35A4 Missense_Mutation p.R214Q 0.54 tolerated(0.69) benign(0.006) TCGA-EA-A5FO-01 5 140564087 140564087 G A PCDHB16 Silent p.P651P 0.04 TCGA-EA-A5FO-01 5 140711085 140711085 G A PCDHGA1 Silent p.T278T 0.59 TCGA-EA-A5FO-01 5 140789450 140789450 C T PCDHGB6 Missense_Mutation p.R561W 0.45 deleterious(0) benign(0.067) TCGA-EA-A5FO-01 5 77784550 77784550 C T LHFPL2 3'UTR 0.34 TCGA-EA-A5FO-01 6 161143598 161143598 G A PLG Missense_Mutation p.A419T 0.27 deleterious(0.01) possibly_damaging(0.897) TCGA-EA-A5FO-01 6 20493347 20493347 C T E2F3 3'UTR 0.38 TCGA-EA-A5FO-01 6 33554459 33554459 C T GGNBP1 Missense_Mutation p.S37L 0.40 tolerated(0.05) possibly_damaging(0.773) TCGA-EA-A5FO-01 6 34827294 34827294 G A UHRF1BP1 Missense_Mutation p.G1054D 0.43 tolerated(0.29) possibly_damaging(0.821) TCGA-EA-A5FO-01 6 52268000 52268000 C T PAQR8 5'UTR 0.59 TCGA-EA-A5FO-01 6 52344532 52344532 G A EFHC1 Silent p.A529A 0.55 TCGA-EA-A5FO-01 6 90660182 90660184 GAG - BACH2 In_Frame_Del p.S548del 0.37 TCGA-EA-A5FO-01 7 137294323 137294323 C T DGKI Silent p.K342K 0.47 TCGA-EA-A5FO-01 7 1510583 1510583 G A INTS1 Missense_Mutation p.A2119V 0.45 deleterious(0.05) possibly_damaging(0.589) TCGA-EA-A5FO-01 7 47879139 47879139 A G PKD1L1 Missense_Mutation p.F1892L 0.53 tolerated(0.32) benign(0.003) TCGA-EA-A5FO-01 7 66105547 66105547 C G KCTD7 3'UTR 0.45 TCGA-EA-A5FO-01 7 98775650 98775650 G A KPNA7 Silent p.L453L 0.55 TCGA-EA-A5FO-01 8 104513213 104513213 G A RIMS2 Silent p.T33T 0.54 TCGA-EA-A5FO-01 8 10465315 10465315 G A RP1L1 Missense_Mutation p.S2098L 0.42 unknown(0) TCGA-EA-A5FO-01 8 113259313 113259313 T A CSMD3 Missense_Mutation p.Q3386H 0.41 tolerated(0.07) benign(0.012) TCGA-EA-A5FO-01 8 26237175 26237175 G A BNIP3L 5'Flank 0.47 TCGA-EA-A5FO-01 9 117087151 117087153 AGA - ORM1 In_Frame_Del p.K138del 0.37 TCGA-EA-A5FO-01 9 140082506 140082506 C T ANAPC2 Missense_Mutation p.R56Q 0.55 tolerated(0.51) benign(0.002) TCGA-EA-A5FO-01 9 69113626 69113626 C T RP11-87H9.3 5'Flank 0.22 TCGA-EA-A5FO-01 X 100743681 100743681 G C ARMCX4 Silent p.V35V 0.31 TCGA-EA-A5FO-01 X 111914462 111914462 G T LHFPL1 Missense_Mutation p.P53T 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-EA-A5FO-01 X 113818833 113818833 G A HTR2C 5'UTR 0.25 TCGA-EA-A5FO-01 X 119004537 119004537 T C RNF113A 3'UTR 0.40 TCGA-EA-A5FO-01 X 130222712 130222712 C T ARHGAP36 Missense_Mutation p.P533S 0.28 tolerated_low_confidence(0.09) probably_damaging(0.998) TCGA-EA-A5FO-01 X 138774282 138774282 C A MCF2 Intron 0.27 TCGA-EA-A5FO-01 X 153631924 153631924 G A DNASE1L1 Silent p.N117N 0.32 TCGA-EA-A5FO-01 X 24006425 24006425 G A KLHL15 Silent p.Y476Y 0.29 TCGA-EA-A5FO-01 X 32360321 32360321 C T DMD Missense_Mutation p.G1940R 0.27 probably_damaging(0.979) TCGA-EA-A5FO-01 X 32717261 32717261 G A DMD Nonsense_Mutation p.Q267* 0.24 TCGA-EA-A5FO-01 X 39922110 39922110 G A BCOR Silent p.S1354S 0.32 TCGA-EA-A5FO-01 X 41419101 41419101 C T CASK Splice_Site p.X557_splice 0.34 TCGA-EA-A5FO-01 X 68750214 68750214 C T FAM155B 3'UTR 0.31 TCGA-EA-A5FO-01 X 75392961 75392961 C T PBDC1 5'UTR 0.36 TCGA-EA-A5FO-01 X 86890562 86890562 G T KLHL4 Splice_Site p.X571_splice 0.25 TCGA-EA-A5O9-01 10 102089003 102089003 A G PKD2L1 Missense_Mutation p.L105S 0.40 deleterious(0.02) possibly_damaging(0.824) TCGA-EA-A5O9-01 10 97921124 97921125 - T ZNF518A RNA 0.41 TCGA-EA-A5O9-01 11 62437636 62437636 C T C11orf48 Intron 0.36 TCGA-EA-A5O9-01 11 66838981 66838981 G A RHOD Missense_Mutation p.A181T 0.40 tolerated(0.08) benign(0.093) TCGA-EA-A5O9-01 11 67021785 67021785 G A KDM2A Missense_Mutation p.R1068Q 0.58 deleterious(0.04) possibly_damaging(0.644) TCGA-EA-A5O9-01 11 7023967 7023967 C A ZNF214 Nonsense_Mutation p.E34* 0.32 TCGA-EA-A5O9-01 12 108638304 108638304 G A WSCD2 Intron 0.24 TCGA-EA-A5O9-01 12 21355441 21355441 T G SLCO1B1 Silent p.P384P 0.42 TCGA-EA-A5O9-01 13 114537555 114537555 A T GAS6 Missense_Mutation p.L268H 0.64 tolerated(0.13) probably_damaging(0.912) TCGA-EA-A5O9-01 13 84452744 84452744 A T SLITRK1 3'UTR 0.32 TCGA-EA-A5O9-01 14 105684053 105684055 TCT - BRF1 In_Frame_Del p.K533del 0.46 TCGA-EA-A5O9-01 14 89627536 89627536 T A FOXN3 3'UTR 0.20 TCGA-EA-A5O9-01 15 78386459 78386459 C T SH2D7 Missense_Mutation p.T61M 0.26 deleterious(0.04) probably_damaging(0.982) TCGA-EA-A5O9-01 16 28997735 28997735 G A LAT Missense_Mutation p.R129Q 0.57 tolerated_low_confidence(0.19) benign(0.089) TCGA-EA-A5O9-01 16 30409621 30409621 C G ZNF48 Silent p.L350L 0.43 TCGA-EA-A5O9-01 16 68265731 68265731 G A ESRP2 Missense_Mutation p.R425W 0.38 deleterious(0) probably_damaging(0.99) TCGA-EA-A5O9-01 16 85952378 85952378 C A IRF8 Silent p.V319V 0.89 TCGA-EA-A5O9-01 17 16335395 16335395 C A TRPV2 Nonsense_Mutation p.Y590* 0.23 TCGA-EA-A5O9-01 17 8192927 8192927 G A SLC25A35 3'UTR 0.33 TCGA-EA-A5O9-01 18 29052351 29052351 C T DSG3 Nonsense_Mutation p.Q668* 0.37 TCGA-EA-A5O9-01 18 45364326 45364326 G A SMAD2 3'UTR 0.41 TCGA-EA-A5O9-01 18 8406235 8406235 G A PTPRM 3'UTR 0.30 TCGA-EA-A5O9-01 19 20228733 20228733 A G ZNF90 Missense_Mutation p.K124E 0.12 tolerated(0.07) benign(0.4) TCGA-EA-A5O9-01 19 20727556 20727556 G A ZNF737 Nonsense_Mutation p.R485* 0.31 TCGA-EA-A5O9-01 19 58005234 58005234 A T ZNF419 Missense_Mutation p.S438C 0.28 deleterious(0.01) possibly_damaging(0.703) TCGA-EA-A5O9-01 1 11181396 11181396 C T MTOR Silent p.L2280L 0.26 TCGA-EA-A5O9-01 1 112525203 112525203 C T KCND3 Missense_Mutation p.R49Q 0.20 tolerated(0.23) benign(0.292) TCGA-EA-A5O9-01 1 1455604 1455604 G A ATAD3A Missense_Mutation p.E248K 0.30 deleterious(0) possibly_damaging(0.871) TCGA-EA-A5O9-01 1 150129152 150129152 G A PLEKHO1 Silent p.S122S 0.21 TCGA-EA-A5O9-01 1 150771640 150771649 TTACCTGTTT CTACTTATCCAGTGCTTATCCAG CTSK Splice_Site p.X295_splice 0.12 TCGA-EA-A5O9-01 1 155449314 155449314 C G ASH1L Missense_Mutation p.G1116A 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EA-A5O9-01 1 21809724 21809724 C G NBPF3 Missense_Mutation p.Q583E 0.27 tolerated(1) benign(0) TCGA-EA-A5O9-01 1 247031024 247031024 A G AHCTF1 Missense_Mutation p.S1069P 0.30 deleterious(0) probably_damaging(0.999) TCGA-EA-A5O9-01 1 40131256 40131256 C T NT5C1A Missense_Mutation p.V124I 0.29 tolerated(0.31) possibly_damaging(0.905) TCGA-EA-A5O9-01 1 44171011 44171011 C T KDM4A 3'UTR 0.33 TCGA-EA-A5O9-01 1 44424143 44424143 G T IPO13 Missense_Mutation p.C587F 0.45 tolerated(0.05) benign(0.186) TCGA-EA-A5O9-01 1 85559238 85559238 G A WDR63 Missense_Mutation p.D319N 0.67 tolerated(0.11) benign(0.127) TCGA-EA-A5O9-01 20 45242372 45242372 A G SLC13A3 Intron 0.36 TCGA-EA-A5O9-01 21 44949626 44949626 G A HSF2BP 3'UTR 0.30 TCGA-EA-A5O9-01 22 20796610 20796610 C T KLHL22 Missense_Mutation p.R552H 0.13 tolerated(0.09) probably_damaging(0.99) TCGA-EA-A5O9-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.85 probably_damaging(1) TCGA-EA-A5O9-01 2 16086825 16086825 G A MYCN 3'UTR 0.59 TCGA-EA-A5O9-01 2 219000467 219000467 G A CXCR2 Missense_Mutation p.A315T 0.31 deleterious(0) benign(0.068) TCGA-EA-A5O9-01 2 29258365 29258365 G A FAM179A Missense_Mutation p.R754H 0.33 tolerated(0.08) benign(0.117) TCGA-EA-A5O9-01 2 33952905 33952905 C T AC009499.1 Intron 0.20 TCGA-EA-A5O9-01 2 44073306 44073306 T A ABCG8 Missense_Mutation p.S60T 0.39 tolerated(0.11) benign(0.023) TCGA-EA-A5O9-01 3 129274390 129274391 - A PLXND1 3'UTR 0.20 TCGA-EA-A5O9-01 3 131624203 131624203 G A CPNE4 Missense_Mutation p.R29C 0.33 tolerated(0.08) possibly_damaging(0.873) TCGA-EA-A5O9-01 3 169482504 169482504 C T ACTRT3 3'Flank 0.32 TCGA-EA-A5O9-01 3 171406541 171406541 G A PLD1 Silent p.D488D 0.11 TCGA-EA-A5O9-01 3 17255822 17255822 C A TBC1D5 Missense_Mutation p.E565D 0.48 tolerated(0.16) benign(0.033) TCGA-EA-A5O9-01 3 37369055 37369055 G A GOLGA4 Missense_Mutation p.R1915K 0.43 benign(0.001) TCGA-EA-A5O9-01 4 140310160 140310160 T C NAA15 3'UTR 0.48 TCGA-EA-A5O9-01 4 1719975 1719975 C T TMEM129 Missense_Mutation p.R195Q 0.44 tolerated(0.54) benign(0.006) TCGA-EA-A5O9-01 5 112770223 112770223 C T TSSK1B Missense_Mutation p.R105Q 0.34 tolerated(0.22) benign(0.059) TCGA-EA-A5O9-01 5 1409228 1409228 C T SLC6A3 Missense_Mutation p.V471I 0.28 tolerated(0.14) benign(0.229) TCGA-EA-A5O9-01 5 148206530 148206530 G A ADRB2 Missense_Mutation p.A46T 0.34 tolerated(0.28) benign(0.075) TCGA-EA-A5O9-01 5 156189618 156189618 G T SGCD 3'Flank 0.19 TCGA-EA-A5O9-01 6 127517994 127517995 - A RSPO3 3'UTR 0.27 TCGA-EA-A5O9-01 6 162683699 162683699 G A PARK2 Silent p.N90N 0.43 TCGA-EA-A5O9-01 6 166872944 166872944 C T RPS6KA2 Silent p.T364T 0.25 TCGA-EA-A5O9-01 6 24358086 24358086 C T KAAG1 Silent p.N73N 0.24 TCGA-EA-A5O9-01 6 44414748 44414748 A G CDC5L 3'UTR 0.29 TCGA-EA-A5O9-01 6 99828199 99828200 - A COQ3 Frame_Shift_Ins p.Y85Vfs*12 0.35 TCGA-EA-A5O9-01 7 104546677 104546677 G A LHFPL3 3'UTR 0.18 TCGA-EA-A5O9-01 7 127725826 127725826 C T SND1 Silent p.Y766Y 0.25 TCGA-EA-A5O9-01 7 148768956 148768956 T A ZNF786 Missense_Mutation p.K303M 0.46 deleterious(0.03) benign(0.008) TCGA-EA-A5O9-01 7 83640560 83640560 T C SEMA3A Silent p.K288K 0.31 TCGA-EA-A5O9-01 7 98563429 98563429 G A TRRAP Missense_Mutation p.E2356K 0.41 possibly_damaging(0.852) TCGA-EA-A5O9-01 8 133152400 133152400 C T KCNQ3 Silent p.A497A 0.10 TCGA-EA-A5O9-01 9 100777816 100777816 C G ANP32B 3'UTR 0.40 TCGA-EA-A5O9-01 9 17236576 17236576 C T CNTLN Missense_Mutation p.A280V 0.29 deleterious(0.02) possibly_damaging(0.487) TCGA-EA-A5O9-01 9 8316251 8316251 G C PTPRD 3'UTR 0.21 TCGA-EA-A5O9-01 X 114141190 114141190 G A HTR2C Missense_Mutation p.E197K 0.26 tolerated(0.27) benign(0.069) TCGA-EA-A5O9-01 X 134156507 134156507 G A FAM127C 5'UTR 0.08 TCGA-EA-A5O9-01 X 139099535 139099535 C A RP11-364B14.1 RNA 0.24 TCGA-EA-A5O9-01 X 148055117 148055117 T A AFF2 Silent p.S1128S 0.22 TCGA-EA-A5O9-01 X 153042691 153042691 G - PLXNB3 Frame_Shift_Del p.V1678Cfs*7 0.62 TCGA-EA-A5O9-01 X 153289010 153289010 C T IRAK1 5'Flank 0.25 TCGA-EA-A5O9-01 X 19449566 19449566 C T MAP3K15 Missense_Mutation p.A386T 0.40 deleterious(0) probably_damaging(0.956) TCGA-EA-A5O9-01 X 31089601 31089601 C T FTHL17 Missense_Mutation p.R157H 0.12 tolerated(0.16) benign(0.042) TCGA-EA-A5O9-01 X 32408240 32408240 T G DMD Missense_Mutation p.N1431T 0.28 benign(0.161) TCGA-EA-A5O9-01 X 35820970 35820970 T C MAGEB16 Silent p.R219R 0.27 TCGA-EA-A5O9-01 X 40571458 40571458 T A MED14 Missense_Mutation p.Q290L 0.38 tolerated(0.65) benign(0.001) TCGA-EA-A5O9-01 X 46618353 46618353 C T SLC9A7 Missense_Mutation p.A38T 0.31 tolerated(0.41) benign(0.006) TCGA-EA-A5ZD-01 10 108589424 108589424 C A SORCS1 Missense_Mutation p.D212Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-EA-A5ZD-01 10 129883836 129883836 C T PTPRE 3'UTR 0.19 TCGA-EA-A5ZD-01 11 71818495 71818495 G A ANAPC15 3'Flank 0.18 TCGA-EA-A5ZD-01 11 92532414 92532414 G A FAT3 Missense_Mutation p.D2079N 0.16 probably_damaging(1) TCGA-EA-A5ZD-01 12 51138529 51138529 G A DIP2B Silent p.P1546P 0.20 TCGA-EA-A5ZD-01 12 70729334 70729334 G T CNOT2 Missense_Mutation p.A256S 0.21 tolerated(0.24) benign(0.045) TCGA-EA-A5ZD-01 14 34400373 34400373 C T EGLN3 Missense_Mutation p.V136M 0.11 deleterious(0) probably_damaging(0.975) TCGA-EA-A5ZD-01 14 71197432 71197432 G A MAP3K9 Missense_Mutation p.R1008W 0.11 deleterious(0) probably_damaging(0.999) TCGA-EA-A5ZD-01 15 26806135 26806135 G T GABRB3 Missense_Mutation p.L342I 0.19 tolerated(0.3) benign(0.19) TCGA-EA-A5ZD-01 15 68125560 68125560 G A SKOR1 Missense_Mutation p.R826Q 0.14 deleterious_low_confidence(0.02) benign(0.417) TCGA-EA-A5ZD-01 16 7629836 7629836 A G RBFOX1 Missense_Mutation p.T130A 0.24 tolerated(0.16) benign(0.006) TCGA-EA-A5ZD-01 17 18067132 18067132 T C MYO15A Missense_Mutation p.I3256T 0.22 unknown(0) TCGA-EA-A5ZD-01 17 4455288 4455288 G A MYBBP1A Silent p.L304L 0.18 TCGA-EA-A5ZD-01 17 9615324 9615324 G A USP43 Missense_Mutation p.R737Q 0.18 deleterious(0) possibly_damaging(0.756) TCGA-EA-A5ZD-01 19 11594336 11594336 G A ZNF653 3'UTR 0.35 TCGA-EA-A5ZD-01 19 15299079 15299079 G A NOTCH3 Nonsense_Mutation p.R487* 0.39 TCGA-EA-A5ZD-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.28 deleterious(0) probably_damaging(0.999) TCGA-EA-A5ZD-01 2 165945120 165945120 A G SCN3A 3'UTR 0.23 TCGA-EA-A5ZD-01 2 165947801 165947801 C T SCN3A Missense_Mutation p.R1621Q 0.05 deleterious(0.03) probably_damaging(0.928) TCGA-EA-A5ZD-01 3 122641210 122641210 C T SEMA5B Missense_Mutation p.E507K 0.32 deleterious(0.01) benign(0.388) TCGA-EA-A5ZD-01 3 137811347 137811347 T A DZIP1L Nonsense_Mutation p.K250* 0.08 TCGA-EA-A5ZD-01 3 89391151 89391151 C G EPHA3 Missense_Mutation p.T406S 0.18 tolerated(0.3) probably_damaging(0.995) TCGA-EA-A5ZD-01 4 119163280 119163280 A G NDST3 Missense_Mutation p.H792R 0.13 tolerated(0.34) possibly_damaging(0.824) TCGA-EA-A5ZD-01 4 148589751 148589751 G T PRMT10 Missense_Mutation p.P298T 0.09 deleterious(0) probably_damaging(1) TCGA-EA-A5ZD-01 4 55973990 55973990 C T KDR Silent p.T442T 0.23 TCGA-EA-A5ZD-01 5 145665548 145665548 C T RBM27 Silent p.D1046D 0.15 TCGA-EA-A5ZD-01 6 12164277 12164277 G A HIVEP1 Silent p.E2580E 0.35 TCGA-EA-A5ZD-01 6 33239435 33239435 G A VPS52 Silent p.T6T 0.15 TCGA-EA-A5ZD-01 8 38677700 38677700 C T TACC1 Missense_Mutation p.S313L 0.44 tolerated(0.09) benign(0.006) TCGA-EA-A5ZD-01 9 90502270 90502270 G C SPATA31E1 Missense_Mutation p.R956S 0.38 deleterious(0.04) benign(0.316) TCGA-EA-A5ZD-01 9 90534089 90534089 C T SPATA31C1 Intron 0.18 TCGA-EA-A5ZD-01 X 100350307 100350307 C T TMEM35 3'UTR 0.08 TCGA-EA-A5ZD-01 X 125686155 125686155 T C DCAF12L1 Missense_Mutation p.D146G 0.16 tolerated(0.39) benign(0.001) TCGA-EA-A5ZD-01 X 152615811 152615811 C A ZNF275 3'UTR 0.20 TCGA-EA-A5ZE-01 10 29819538 29819538 T C SVIL Missense_Mutation p.R702G 0.35 deleterious(0) benign(0.1) TCGA-EA-A5ZE-01 10 37438770 37438770 G A ANKRD30A Silent p.L490L 0.28 TCGA-EA-A5ZE-01 10 70404465 70404465 A G TET1 Missense_Mutation p.D660G 0.33 tolerated(0.08) benign(0.003) TCGA-EA-A5ZE-01 10 81075821 81075821 G A ZMIZ1 3'UTR 0.41 TCGA-EA-A5ZE-01 10 90695049 90695049 C T ACTA2 Silent p.Q355Q 0.10 TCGA-EA-A5ZE-01 11 18456408 18456408 C T LDHC Silent p.V180V 0.49 TCGA-EA-A5ZE-01 11 47374220 47374220 C T MYBPC3 5'UTR 0.48 TCGA-EA-A5ZE-01 11 6239972 6239972 G A FAM160A2 Silent p.H431H 0.56 TCGA-EA-A5ZE-01 11 6738168 6738168 C A GVINP1 RNA 0.53 TCGA-EA-A5ZE-01 12 120534366 120534366 C A RAB35 3'UTR 0.34 TCGA-EA-A5ZE-01 12 21377663 21377663 T G SLCO1B1 Missense_Mutation p.I585M 0.10 tolerated(0.06) possibly_damaging(0.612) TCGA-EA-A5ZE-01 12 41316209 41316209 G A CNTN1 Missense_Mutation p.E127K 0.41 deleterious(0.05) probably_damaging(0.925) TCGA-EA-A5ZE-01 13 48953743 48953743 G T RB1 Missense_Mutation p.G449V 0.62 deleterious(0) probably_damaging(1) TCGA-EA-A5ZE-01 13 48955492 48955492 C T RB1 Silent p.I536I 0.69 TCGA-EA-A5ZE-01 14 96138553 96138554 - T TCL6 RNA 0.33 TCGA-EA-A5ZE-01 15 102293032 102293032 G A DNM1P47 RNA 0.08 TCGA-EA-A5ZE-01 15 23811385 23811385 G A MKRN3 Silent p.P152P 0.36 TCGA-EA-A5ZE-01 15 23931620 23931620 G A NDN Missense_Mutation p.R249C 0.42 deleterious(0) probably_damaging(0.967) TCGA-EA-A5ZE-01 15 38229077 38229077 G A TMCO5A Missense_Mutation p.G57D 0.36 tolerated(1) benign(0) TCGA-EA-A5ZE-01 16 1129641 1129641 C T SSTR5 Missense_Mutation p.A258V 0.41 tolerated(1) benign(0.007) TCGA-EA-A5ZE-01 16 15188124 15188124 C T RRN3 5'UTR 0.22 TCGA-EA-A5ZE-01 16 28334694 28334694 G A SBK1 3'UTR 0.30 TCGA-EA-A5ZE-01 16 55363210 55363210 G A IRX6 Silent p.P440P 0.35 TCGA-EA-A5ZE-01 16 67469611 67469611 T G HSD11B2 Missense_Mutation p.L116V 0.21 tolerated(0.49) benign(0.284) TCGA-EA-A5ZE-01 16 87866309 87866309 G T SLC7A5 3'UTR 0.31 TCGA-EA-A5ZE-01 16 9916231 9916231 A G GRIN2A Silent p.P686P 0.33 TCGA-EA-A5ZE-01 17 42395476 42395476 C T RUNDC3A Missense_Mutation p.T404M 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EA-A5ZE-01 18 2892085 2892085 G A EMILIN2 Missense_Mutation p.D654N 0.31 tolerated(0.41) benign(0.03) TCGA-EA-A5ZE-01 18 29617087 29617087 G A RNF125 Missense_Mutation p.R58H 0.32 tolerated(0.84) benign(0.011) TCGA-EA-A5ZE-01 18 67996530 67996530 G A SOCS6 3'UTR 0.33 TCGA-EA-A5ZE-01 19 13064391 13064391 C T RAD23A 3'UTR 0.44 TCGA-EA-A5ZE-01 19 20229730 20229730 A G ZNF90 Missense_Mutation p.E456G 0.29 deleterious(0.01) probably_damaging(0.951) TCGA-EA-A5ZE-01 19 2852736 2852736 G C ZNF555 Missense_Mutation p.E225Q 0.10 deleterious(0.01) possibly_damaging(0.452) TCGA-EA-A5ZE-01 19 34859566 34859566 G C GPI Missense_Mutation p.E160Q 0.32 tolerated_low_confidence(0.14) possibly_damaging(0.821) TCGA-EA-A5ZE-01 19 34859589 34859589 G A GPI Silent p.K167K 0.28 TCGA-EA-A5ZE-01 19 55702891 55702891 C G PTPRH Missense_Mutation p.E788Q 0.38 benign(0.199) TCGA-EA-A5ZE-01 1 109817293 109817293 C T CELSR2 3'UTR 0.35 TCGA-EA-A5ZE-01 1 145663237 145663245 AATAGAGCC - RNF115 In_Frame_Del p.R101_N103del 0.40 TCGA-EA-A5ZE-01 1 164816037 164816037 G T PBX1 3'UTR 0.19 TCGA-EA-A5ZE-01 1 183515398 183515399 - T SMG7 Frame_Shift_Ins p.D845Rfs*24 0.14 TCGA-EA-A5ZE-01 1 186370125 186370125 C G OCLM 5'UTR 0.71 TCGA-EA-A5ZE-01 1 197091367 197091367 C T ASPM Silent p.R1221R 0.21 TCGA-EA-A5ZE-01 1 247003181 247003181 C T AHCTF1 3'UTR 0.23 TCGA-EA-A5ZE-01 1 25227991 25227991 G A RUNX3 3'UTR 0.29 TCGA-EA-A5ZE-01 1 35365814 35365814 G A DLGAP3 Missense_Mutation p.R390C 0.32 deleterious(0.01) possibly_damaging(0.764) TCGA-EA-A5ZE-01 1 52344311 52344311 A T NRD1 5'UTR 0.38 TCGA-EA-A5ZE-01 20 10618454 10618454 G A JAG1 3'UTR 0.38 TCGA-EA-A5ZE-01 20 61943826 61943826 A T COL20A1 Missense_Mutation p.T620S 0.33 tolerated(0.1) possibly_damaging(0.888) TCGA-EA-A5ZE-01 21 31709770 31709770 C T KRTAP27-1 Missense_Mutation p.D73N 0.41 tolerated(0.28) benign(0.01) TCGA-EA-A5ZE-01 22 47569417 47569417 C G TBC1D22A 3'UTR 0.38 TCGA-EA-A5ZE-01 2 166167041 166167041 G A SCN2A Silent p.G302G 0.26 TCGA-EA-A5ZE-01 2 2328466 2328466 G A MYT1L Intron 0.41 TCGA-EA-A5ZE-01 2 234224718 234224718 C T SAG Intron 0.44 TCGA-EA-A5ZE-01 2 241663449 241663449 G A KIF1A Missense_Mutation p.R1421C 0.30 deleterious(0.04) benign(0.063) TCGA-EA-A5ZE-01 3 112993432 112993432 G A BOC Missense_Mutation p.R482H 0.23 deleterious(0) probably_damaging(0.989) TCGA-EA-A5ZE-01 3 121340434 121340434 A G FBXO40 Missense_Mutation p.E53G 0.32 deleterious(0) probably_damaging(0.996) TCGA-EA-A5ZE-01 3 151165584 151165584 G A IGSF10 Missense_Mutation p.R729C 0.23 tolerated(0.05) possibly_damaging(0.817) TCGA-EA-A5ZE-01 3 195481096 195481096 G A MUC4 Missense_Mutation p.R5106W 0.22 possibly_damaging(0.527) TCGA-EA-A5ZE-01 4 111558194 111558194 C T PITX2 5'UTR 0.69 TCGA-EA-A5ZE-01 4 146056332 146056332 A G OTUD4 3'UTR 0.19 TCGA-EA-A5ZE-01 4 17616252 17616278 TGGATCTCTCTTGCGCCATTCCAAACA - MED28 Missense_Mutation 0.77 TCGA-EA-A5ZE-01 4 3190799 3190799 C T HTT Silent p.L1783L 0.64 TCGA-EA-A5ZE-01 4 66197591 66197591 C T EPHA5 Intron 0.62 TCGA-EA-A5ZE-01 5 112178155 112178155 G A APC Silent p.Q2288Q 0.33 TCGA-EA-A5ZE-01 5 127700359 127700359 G A FBN2 Missense_Mutation p.R788C 0.30 deleterious(0.01) probably_damaging(0.93) TCGA-EA-A5ZE-01 5 137588545 137588545 G A GFRA3 3'UTR 0.27 TCGA-EA-A5ZE-01 5 140242296 140242296 G A AC005609.1 3'UTR 0.34 TCGA-EA-A5ZE-01 5 38481717 38481718 - A LIFR Frame_Shift_Ins p.Q1092Sfs*20 0.16 TCGA-EA-A5ZE-01 6 114274456 114274456 G A HDAC2 Silent p.G208G 0.20 TCGA-EA-A5ZE-01 6 121768443 121768443 G T GJA1 Silent p.G150G 0.34 TCGA-EA-A5ZE-01 6 1313297 1313297 C - FOXQ1 Frame_Shift_Del p.Y122Tfs*19 0.39 TCGA-EA-A5ZE-01 6 139095016 139095016 G A CCDC28A Missense_Mutation p.G69S 0.33 tolerated_low_confidence(0.14) benign(0) TCGA-EA-A5ZE-01 6 24408659 24408659 C T MRS2 Silent p.N96N 0.43 TCGA-EA-A5ZE-01 6 27839778 27839778 C G HIST1H3I Missense_Mutation p.E106Q 0.33 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-EA-A5ZE-01 6 28473507 28473507 T C GPX6 Silent p.K144K 0.43 TCGA-EA-A5ZE-01 6 33237790 33237790 C G VPS52 Missense_Mutation p.E72Q 0.32 tolerated(0.13) benign(0.155) TCGA-EA-A5ZE-01 6 33239880 33239880 C A RPS18 5'UTR 0.40 TCGA-EA-A5ZE-01 6 46660090 46660090 G A TDRD6 Missense_Mutation p.A1409T 0.29 tolerated(0.1) benign(0.314) TCGA-EA-A5ZE-01 6 72011165 72011165 C T OGFRL1 Missense_Mutation p.P257S 0.23 deleterious(0) probably_damaging(0.976) TCGA-EA-A5ZE-01 6 82455748 82455748 G A FAM46A 3'UTR 0.12 TCGA-EA-A5ZE-01 7 117407150 117407150 A G CTTNBP2 Silent p.V953V 0.34 TCGA-EA-A5ZE-01 7 128394425 128394425 C T CALU Intron 0.37 TCGA-EA-A5ZE-01 7 19155425 19155425 T A TWIST1 3'UTR 0.30 TCGA-EA-A5ZE-01 7 2579484 2579484 G C BRAT1 Silent p.L478L 0.22 TCGA-EA-A5ZE-01 7 29994813 29994813 A G SCRN1 Missense_Mutation p.L128P 0.30 deleterious(0) probably_damaging(0.994) TCGA-EA-A5ZE-01 7 92905564 92905564 G A CCDC132 Missense_Mutation p.A297T 0.28 deleterious(0.04) possibly_damaging(0.625) TCGA-EA-A5ZE-01 8 10395994 10395995 - G PRSS55 Frame_Shift_Ins p.P253Afs*10 0.22 TCGA-EA-A5ZE-01 8 140630966 140630966 G A KCNK9 Silent p.Y220Y 0.42 TCGA-EA-A5ZE-01 8 77593568 77593568 G A ZFHX4 5'UTR 0.52 TCGA-EA-A5ZE-01 8 82357056 82357056 G C PMP2 Missense_Mutation p.T81S 0.31 tolerated(0.06) benign(0.015) TCGA-EA-A5ZE-01 8 97172815 97172815 C T GDF6 Missense_Mutation p.E36K 0.51 deleterious(0.03) benign(0.048) TCGA-EA-A5ZE-01 9 139972841 139972841 C T UAP1L1 Intron 0.21 TCGA-EA-A5ZE-01 9 88692498 88692498 G A GOLM1 Silent p.I46I 0.36 TCGA-EA-A5ZE-01 X 104999271 104999271 G T IL1RAPL2 Silent p.L431L 0.19 TCGA-EA-A5ZE-01 X 135426995 135426995 C G GPR112 Missense_Mutation p.S377C 0.12 deleterious(0) benign(0.371) TCGA-EA-A5ZE-01 X 34648417 34648417 G A TMEM47 3'UTR 0.33 TCGA-EA-A5ZF-01 10 45924114 45924114 G A ALOX5 Missense_Mutation p.A295T 0.30 tolerated(0.42) benign(0.267) TCGA-EA-A5ZF-01 10 98355335 98355335 C G PIK3AP1 Nonstop_Mutation p.*806Sext*26 0.32 TCGA-EA-A5ZF-01 11 118037789 118037789 C T SCN2B Missense_Mutation p.R154Q 0.41 tolerated(0.06) possibly_damaging(0.663) TCGA-EA-A5ZF-01 11 1471062 1471062 C A BRSK2 Missense_Mutation p.P474H 0.85 deleterious(0.01) probably_damaging(0.952) TCGA-EA-A5ZF-01 11 31263120 31263120 C T DCDC1 Silent p.L366L 0.36 TCGA-EA-A5ZF-01 11 44959840 44959840 G A TP53I11 Missense_Mutation p.T16M 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-EA-A5ZF-01 11 57076791 57076792 CT - TNKS1BP1 Frame_Shift_Del p.R1131Sfs*7 0.32 TCGA-EA-A5ZF-01 11 57799064 57799064 T G OR6Q1 Missense_Mutation p.S214A 0.12 deleterious(0.03) probably_damaging(0.987) TCGA-EA-A5ZF-01 11 6261670 6261670 C T CNGA4 Missense_Mutation p.R216C 0.44 deleterious(0) probably_damaging(1) TCGA-EA-A5ZF-01 11 77934520 77934520 G A GAB2 Missense_Mutation p.P502L 0.12 tolerated(0.09) benign(0.002) TCGA-EA-A5ZF-01 11 862623 862623 C G TSPAN4 Missense_Mutation p.S46C 0.76 tolerated(0.08) possibly_damaging(0.676) TCGA-EA-A5ZF-01 11 862657 862657 C T TSPAN4 Silent p.L57L 0.75 TCGA-EA-A5ZF-01 12 100463855 100463855 G C UHRF1BP1L Intron 0.14 TCGA-EA-A5ZF-01 12 49666292 49666292 A G TUBA1C Missense_Mutation p.D211G 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.665) TCGA-EA-A5ZF-01 12 52984671 52984671 G A KRT72 Silent p.L346L 0.32 TCGA-EA-A5ZF-01 12 57867943 57867943 C T ARHGAP9 Silent p.L600L 0.21 TCGA-EA-A5ZF-01 13 50106591 50106591 G A RCBTB1 3'UTR 0.18 TCGA-EA-A5ZF-01 14 23946746 23946747 CT - NGDN Frame_Shift_Del p.Q303Efs*30 0.42 TCGA-EA-A5ZF-01 14 65413787 65413787 C G RAB15 3'UTR 0.81 TCGA-EA-A5ZF-01 14 95030000 95030000 C T SERPINA4 Missense_Mutation p.R61C 0.31 tolerated(0.1) benign(0.057) TCGA-EA-A5ZF-01 15 24922847 24922847 G A NPAP1 Silent p.Q611Q 0.78 TCGA-EA-A5ZF-01 15 41231137 41231137 T G DLL4 3'UTR 0.32 TCGA-EA-A5ZF-01 15 42695076 42695076 C T CAPN3 Missense_Mutation p.R541W 0.25 deleterious(0) probably_damaging(0.999) TCGA-EA-A5ZF-01 15 65918097 65918097 G A SLC24A1 Missense_Mutation p.R560H 0.33 probably_damaging(0.954) TCGA-EA-A5ZF-01 15 84657473 84657473 G A ADAMTSL3 Silent p.Q1249Q 0.64 TCGA-EA-A5ZF-01 16 19083257 19083257 A G COQ7 Silent p.G27G 0.21 TCGA-EA-A5ZF-01 16 24942596 24942596 G A ARHGAP17 Missense_Mutation p.P675L 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.713) TCGA-EA-A5ZF-01 16 28950043 28950043 C G CD19 Silent p.P512P 0.20 TCGA-EA-A5ZF-01 16 7645614 7645614 G A RBFOX1 Missense_Mutation p.G198S 0.34 tolerated(0.05) probably_damaging(0.963) TCGA-EA-A5ZF-01 16 90060285 90060285 C A AFG3L1P 5'Flank 0.56 TCGA-EA-A5ZF-01 17 36958427 36958427 G A CWC25 Missense_Mutation p.S399F 0.19 deleterious(0) probably_damaging(0.997) TCGA-EA-A5ZF-01 17 42084059 42084059 G T NAGS Nonsense_Mutation p.E360* 0.28 TCGA-EA-A5ZF-01 17 43333141 43333141 G A SPATA32 Silent p.F136F 0.64 TCGA-EA-A5ZF-01 17 60020030 60020030 T A MED13 3'UTR 0.27 TCGA-EA-A5ZF-01 17 60349273 60349273 C A TBC1D3P2 RNA 0.59 TCGA-EA-A5ZF-01 17 62495953 62495953 C T DDX5 3'UTR 0.21 TCGA-EA-A5ZF-01 17 80393656 80393656 C T HEXDC Missense_Mutation p.A180V 0.05 tolerated(0.07) benign(0.254) TCGA-EA-A5ZF-01 18 12454453 12454453 G A SPIRE1 Silent p.L556L 0.20 TCGA-EA-A5ZF-01 18 20576348 20576348 G C RBBP8 Missense_Mutation p.E651Q 0.45 deleterious(0.01) possibly_damaging(0.804) TCGA-EA-A5ZF-01 18 51013194 51013194 C T DCC Missense_Mutation p.T1255M 0.62 deleterious(0.01) probably_damaging(0.909) TCGA-EA-A5ZF-01 19 1063796 1063796 G A ABCA7 Missense_Mutation p.R1962H 0.34 deleterious(0.02) possibly_damaging(0.479) TCGA-EA-A5ZF-01 19 12359151 12359151 G A ZNF44 Silent p.F188F 0.30 TCGA-EA-A5ZF-01 19 1952627 1952627 A T CSNK1G2 Intron 0.56 TCGA-EA-A5ZF-01 19 23927271 23927271 T C ZNF681 Missense_Mutation p.T361A 0.29 deleterious(0.02) benign(0.393) TCGA-EA-A5ZF-01 19 31039805 31039805 C T ZNF536 Silent p.S1093S 0.24 TCGA-EA-A5ZF-01 19 36034590 36034590 G A GAPDHS Missense_Mutation p.R306Q 0.10 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EA-A5ZF-01 19 4816382 4816382 G T TICAM1 Missense_Mutation p.P670T 0.27 tolerated(0.41) benign(0.008) TCGA-EA-A5ZF-01 19 49657432 49657432 C T HRC Missense_Mutation p.E355K 0.17 deleterious(0) probably_damaging(0.989) TCGA-EA-A5ZF-01 19 52887528 52887528 G T ZNF880 Missense_Mutation p.R232I 0.26 deleterious(0.04) possibly_damaging(0.723) TCGA-EA-A5ZF-01 19 58846168 58846168 G A ZSCAN22 5'UTR 0.11 TCGA-EA-A5ZF-01 1 168683560 168683560 C A DPT Silent p.G110G 0.20 TCGA-EA-A5ZF-01 1 180601327 180601327 G T XPR1 5'UTR 0.64 TCGA-EA-A5ZF-01 1 193220216 193220216 G A CDC73 3'UTR 0.29 TCGA-EA-A5ZF-01 1 222885352 222885352 G C AIDA Intron 0.64 TCGA-EA-A5ZF-01 1 226420826 226420826 G C LIN9 Missense_Mutation p.I514M 0.23 deleterious(0) probably_damaging(0.985) TCGA-EA-A5ZF-01 1 228645203 228645203 C A HIST3H2A Missense_Mutation p.G106C 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-EA-A5ZF-01 1 38289394 38289394 G A MTF1 Missense_Mutation p.P387S 0.24 tolerated(0.72) benign(0.004) TCGA-EA-A5ZF-01 20 50407220 50407220 C T SALL4 Missense_Mutation p.R601Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-EA-A5ZF-01 21 37443336 37443336 C G CBR1 Silent p.L126L 0.53 TCGA-EA-A5ZF-01 22 21385831 21385831 C T SLC7A4 Missense_Mutation p.E91K 0.24 deleterious(0) probably_damaging(1) TCGA-EA-A5ZF-01 22 24176926 24176926 G A DERL3 3'UTR 0.41 TCGA-EA-A5ZF-01 22 24176933 24176933 G A DERL3 3'UTR 0.42 TCGA-EA-A5ZF-01 22 51016307 51016307 G A CPT1B Missense_Mutation p.T13M 0.37 deleterious(0) probably_damaging(0.96) TCGA-EA-A5ZF-01 2 105858750 105858750 G A GPR45 Silent p.P145P 0.36 TCGA-EA-A5ZF-01 2 136519420 136519420 C T UBXN4 Nonsense_Mutation p.Q181* 0.08 TCGA-EA-A5ZF-01 2 166845706 166845706 T C SCN1A 3'UTR 0.30 TCGA-EA-A5ZF-01 2 219919289 219919289 G A IHH 3'UTR 0.19 TCGA-EA-A5ZF-01 2 234072395 234072395 C G INPP5D Missense_Mutation p.S416C 0.16 tolerated(0.39) probably_damaging(0.979) TCGA-EA-A5ZF-01 2 55804494 55804494 T C SMEK2 Splice_Site p.X522_splice 0.51 TCGA-EA-A5ZF-01 3 130435286 130435286 G A PIK3R4 Missense_Mutation p.P762L 0.12 tolerated(0.12) benign(0.032) TCGA-EA-A5ZF-01 3 141011882 141011882 C T ACPL2 Silent p.V426V 0.77 TCGA-EA-A5ZF-01 3 46497810 46497810 C A LTF Missense_Mutation p.V96L 0.35 deleterious(0.03) benign(0.265) TCGA-EA-A5ZF-01 3 99567710 99567710 G A FILIP1L Missense_Mutation p.P937L 0.15 deleterious(0) probably_damaging(0.989) TCGA-EA-A5ZF-01 4 123234800 123234800 A T KIAA1109 Missense_Mutation p.T3424S 0.23 probably_damaging(0.986) TCGA-EA-A5ZF-01 4 183714672 183714672 G T TENM3 Missense_Mutation p.A2283S 0.32 deleterious(0.02) possibly_damaging(0.739) TCGA-EA-A5ZF-01 4 8217897 8217897 C T SH3TC1 Missense_Mutation p.P181S 0.07 tolerated(0.46) probably_damaging(1) TCGA-EA-A5ZF-01 5 139928616 139928617 - AGCTGGAGG EIF4EBP3 In_Frame_Ins p.E79_L81dup 0.32 TCGA-EA-A5ZF-01 5 140480011 140480011 C T PCDHB3 5'Flank 0.20 TCGA-EA-A5ZF-01 5 143506 143506 C T PLEKHG4B Missense_Mutation p.R211C 0.08 deleterious(0.04) probably_damaging(0.977) TCGA-EA-A5ZF-01 5 158750115 158750117 AGC - IL12B In_Frame_Del p.L104del 0.30 TCGA-EA-A5ZF-01 5 35047947 35047947 G A AGXT2 Silent p.S17S 0.18 TCGA-EA-A5ZF-01 6 13206350 13206350 C T PHACTR1 Missense_Mutation p.T323I 0.41 deleterious(0) benign(0.25) TCGA-EA-A5ZF-01 6 152639379 152639379 T C SYNE1 Missense_Mutation p.D5470G 0.37 benign(0.37) TCGA-EA-A5ZF-01 6 160492969 160492969 G A IGF2R Missense_Mutation p.V1491M 0.62 deleterious(0.01) possibly_damaging(0.87) TCGA-EA-A5ZF-01 6 34835144 34835144 C G UHRF1BP1 Silent p.L1185L 0.35 TCGA-EA-A5ZF-01 6 47749898 47749898 G A OPN5 Silent p.A32A 0.32 TCGA-EA-A5ZF-01 6 86324900 86324900 T C SYNCRIP Silent p.E482E 0.46 TCGA-EA-A5ZF-01 6 91254329 91254329 G A MAP3K7 Silent p.G411G 0.31 TCGA-EA-A5ZF-01 7 100490160 100490160 C T ACHE Missense_Mutation p.A450T 0.49 tolerated(0.07) possibly_damaging(0.611) TCGA-EA-A5ZF-01 7 103243750 103243750 C G RELN Splice_Site p.X1111_splice 0.28 TCGA-EA-A5ZF-01 7 137271863 137271863 G A DGKI Nonsense_Mutation p.R469* 0.29 TCGA-EA-A5ZF-01 7 155250835 155250835 C T EN2 5'UTR 0.25 TCGA-EA-A5ZF-01 7 74466872 74466872 G A WBSCR16 Silent p.N421N 0.38 TCGA-EA-A5ZF-01 7 99905580 99905580 G A SPDYE3 Silent p.Q24Q 0.05 TCGA-EA-A5ZF-01 8 38111109 38111109 G C DDHD2 Missense_Mutation p.E643Q 0.48 tolerated(0.17) benign(0.035) TCGA-EA-A5ZF-01 9 15474030 15474032 CTT - PSIP1 In_Frame_Del p.E278del 0.31 TCGA-EA-A5ZF-01 9 38620249 38620249 C T ANKRD18A Missense_Mutation p.G12S 0.35 deleterious(0.04) possibly_damaging(0.883) TCGA-EA-A5ZF-01 9 79259742 79259742 G - PRUNE2 Frame_Shift_Del p.L2881Ffs*16 0.40 TCGA-EA-A5ZF-01 9 96009882 96009882 G A WNK2 Missense_Mutation p.D534N 0.41 unknown(0) TCGA-EA-A5ZF-01 X 114424716 114424716 C T RBMXL3 Missense_Mutation p.R238W 0.12 deleterious_low_confidence(0.05) benign(0.001) TCGA-EA-A5ZF-01 X 119388668 119388668 G T ZBTB33 Silent p.T466T 0.31 TCGA-EA-A5ZF-01 X 119674274 119674274 T G CUL4B Silent p.A547A 0.14 TCGA-EA-A5ZF-01 X 130678497 130678497 G A OR13H1 Silent p.G150G 0.59 TCGA-EA-A5ZF-01 X 138809438 138809438 G A ATP11C 3'UTR 0.20 TCGA-EA-A5ZF-01 X 139038831 139038831 G A CXorf66 Nonsense_Mutation p.Q104* 0.19 TCGA-EA-A5ZF-01 X 144905446 144905446 G A SLITRK2 Silent p.L501L 0.29 TCGA-EA-A5ZF-01 X 150345304 150345304 C A GPR50 Silent p.I37I 0.05 TCGA-EA-A5ZF-01 X 152159505 152159505 C T PNMA5 Missense_Mutation p.R213Q 0.46 tolerated(0.2) benign(0.358) TCGA-EA-A5ZF-01 X 152954233 152954233 C T SLC6A8 Silent p.F68F 0.13 TCGA-EA-A5ZF-01 X 19002029 19002029 C T PHKA2 Missense_Mutation p.G8R 0.10 tolerated(0.05) probably_damaging(0.981) TCGA-EA-A5ZF-01 X 301537 301537 G A PPP2R3B Silent p.L438L 0.33 TCGA-EA-A5ZF-01 X 31525526 31525526 G C DMD Missense_Mutation p.N2754K 0.25 possibly_damaging(0.607) TCGA-EA-A5ZF-01 X 49113249 49113249 G A FOXP3 Silent p.P202P 0.19 TCGA-EA-A5ZF-01 X 54098878 54098878 C T FAM120C 3'UTR 0.13 TCGA-EA-A6QX-01 10 28900809 28900809 C T WAC Silent p.I465I 0.09 TCGA-EA-A6QX-01 10 33468994 33468994 C T NRP1 3'UTR 0.38 TCGA-EA-A6QX-01 10 47087829 47087829 C G NPY4R Missense_Mutation p.S349W 0.17 deleterious(0.04) possibly_damaging(0.547) TCGA-EA-A6QX-01 10 70719876 70719876 G A DDX21 Silent p.K134K 0.47 TCGA-EA-A6QX-01 11 103116084 103116084 A G DYNC2H1 Silent p.R3348R 0.45 TCGA-EA-A6QX-01 11 117667944 117667944 C T DSCAML1 Missense_Mutation p.E11K 0.50 deleterious_low_confidence(0) unknown(0) TCGA-EA-A6QX-01 11 119061433 119061433 C T CCDC153 Missense_Mutation p.E156K 0.35 deleterious(0.04) possibly_damaging(0.453) TCGA-EA-A6QX-01 11 119209986 119209986 C T C1QTNF5 3'UTR 0.49 TCGA-EA-A6QX-01 11 43284422 43284422 G T HNRNPKP3 RNA 0.47 TCGA-EA-A6QX-01 11 56432011 56432011 A G OR5AR1 Missense_Mutation p.M284V 0.67 deleterious(0.02) probably_damaging(0.942) TCGA-EA-A6QX-01 11 59225108 59225108 G A OR4D6 Silent p.L225L 0.19 TCGA-EA-A6QX-01 11 63721865 63721865 T C NAA40 Missense_Mutation p.S210P 0.46 tolerated(0.13) possibly_damaging(0.642) TCGA-EA-A6QX-01 11 66026210 66026210 G A KLC2 Missense_Mutation p.E49K 0.24 tolerated(0.24) benign(0.012) TCGA-EA-A6QX-01 11 66029354 66029354 G C KLC2 Missense_Mutation p.E124Q 0.12 deleterious(0.04) probably_damaging(0.931) TCGA-EA-A6QX-01 12 100787237 100787237 C T SLC17A8 Silent p.V188V 0.39 TCGA-EA-A6QX-01 12 111908476 111908476 C T ATXN2 Silent p.A1023A 0.42 TCGA-EA-A6QX-01 12 125420292 125420292 C G RPL22P19 RNA 0.45 TCGA-EA-A6QX-01 12 40925086 40925086 C T MUC19 Intron 0.46 TCGA-EA-A6QX-01 12 49420007 49420007 G A KMT2D Nonsense_Mutation p.Q5248* 0.45 TCGA-EA-A6QX-01 12 50356026 50356026 C T AQP5 Missense_Mutation p.L76F 0.25 tolerated(1) benign(0.051) TCGA-EA-A6QX-01 12 52778996 52778996 C T KRT84 Missense_Mutation p.R125K 0.12 deleterious(0) possibly_damaging(0.899) TCGA-EA-A6QX-01 13 35692417 35692417 C T NBEA Missense_Mutation p.T712M 0.43 deleterious(0) probably_damaging(0.986) TCGA-EA-A6QX-01 13 52511638 52511638 C A ATP7B Nonsense_Mutation p.E1293* 0.37 TCGA-EA-A6QX-01 14 101350763 101350763 C T RTL1 Missense_Mutation p.M121I 0.23 tolerated_low_confidence(0.34) benign(0.002) TCGA-EA-A6QX-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.20 deleterious(0) probably_damaging(0.999) TCGA-EA-A6QX-01 15 69732248 69732248 G A KIF23 Silent p.E573E 0.35 TCGA-EA-A6QX-01 16 1034743 1034743 C T SOX8 Missense_Mutation p.T233M 0.36 deleterious(0) benign(0.179) TCGA-EA-A6QX-01 16 3349798 3349798 C T TIGD7 Missense_Mutation p.E273K 0.35 tolerated(0.06) probably_damaging(0.949) TCGA-EA-A6QX-01 16 4932511 4932511 C T PPL 3'UTR 0.64 TCGA-EA-A6QX-01 16 70697638 70697638 C T MTSS1L Missense_Mutation p.R729H 0.44 deleterious(0) probably_damaging(0.998) TCGA-EA-A6QX-01 16 84213391 84213391 G A TAF1C Missense_Mutation p.S589L 0.34 deleterious(0) probably_damaging(0.999) TCGA-EA-A6QX-01 17 42293273 42293273 C T UBTF Splice_Site p.X106_splice 0.33 TCGA-EA-A6QX-01 17 49708440 49708440 C G CA10 3'UTR 0.80 TCGA-EA-A6QX-01 17 78023767 78023767 G A CCDC40 Silent p.L306L 0.09 TCGA-EA-A6QX-01 17 78024013 78024013 G C CCDC40 Missense_Mutation p.E364Q 0.09 deleterious(0.02) benign(0.04) TCGA-EA-A6QX-01 17 78196495 78196495 C T SLC26A11 Silent p.F92F 0.46 TCGA-EA-A6QX-01 17 78196636 78196636 C G SLC26A11 Silent p.V139V 0.38 TCGA-EA-A6QX-01 18 30092860 30092860 G T WBP11P1 RNA 0.31 TCGA-EA-A6QX-01 18 54629743 54629743 C T WDR7 Missense_Mutation p.R1383W 0.13 deleterious(0) probably_damaging(0.997) TCGA-EA-A6QX-01 18 71749198 71749198 G A FBXO15 Silent p.L409L 0.44 TCGA-EA-A6QX-01 19 17885254 17885254 G A FCHO1 Missense_Mutation p.R296Q 0.44 deleterious(0.01) probably_damaging(0.983) TCGA-EA-A6QX-01 19 39219710 39219710 C T ACTN4 Silent p.F831F 0.51 TCGA-EA-A6QX-01 19 39221184 39221184 C G CAPN12 3'Flank 0.43 TCGA-EA-A6QX-01 19 39221317 39221317 C G CAPN12 3'UTR 0.54 TCGA-EA-A6QX-01 19 4054708 4054709 - G ZBTB7A Frame_Shift_Ins p.A175Rfs*19 0.43 TCGA-EA-A6QX-01 19 43023356 43023356 G A CEACAM1 Silent p.I330I 0.47 TCGA-EA-A6QX-01 19 45381604 45381604 G A PVRL2 Intron 0.11 TCGA-EA-A6QX-01 19 45381610 45381610 G A PVRL2 Intron 0.12 TCGA-EA-A6QX-01 19 50308784 50308784 G A AP2A1 Missense_Mutation p.E829K 0.58 deleterious(0) probably_damaging(0.929) TCGA-EA-A6QX-01 19 7595354 7595354 C T MCOLN1 Silent p.I514I 0.36 TCGA-EA-A6QX-01 1 152080039 152080039 A G TCHH Missense_Mutation p.I1885T 0.49 benign(0.307) TCGA-EA-A6QX-01 1 156706681 156706681 C T RRNAD1 3'UTR 0.36 TCGA-EA-A6QX-01 1 156901815 156901815 C T LRRC71 Silent p.L479L 0.09 TCGA-EA-A6QX-01 1 17023034 17023034 G C ESPNP RNA 0.12 TCGA-EA-A6QX-01 1 202850060 202850060 G A RABIF 3'UTR 0.27 TCGA-EA-A6QX-01 1 226413277 226413277 C T MIXL1 Missense_Mutation p.P155S 0.24 deleterious(0.03) benign(0.012) TCGA-EA-A6QX-01 1 27332618 27332618 C T FAM46B Silent p.T365T 0.27 TCGA-EA-A6QX-01 1 43853286 43853286 G A MED8 Missense_Mutation p.S53F 0.37 deleterious(0) probably_damaging(1) TCGA-EA-A6QX-01 1 6586866 6586866 C G NOL9 Missense_Mutation p.E617Q 0.32 tolerated(0.05) probably_damaging(0.967) TCGA-EA-A6QX-01 1 78024480 78024480 G A AK5 3'UTR 0.55 TCGA-EA-A6QX-01 1 89735176 89735176 C T GBP5 Silent p.L21L 0.37 TCGA-EA-A6QX-01 20 2945566 2945566 G C PTPRA Missense_Mutation p.E45Q 0.13 tolerated_low_confidence(0.14) benign(0.002) TCGA-EA-A6QX-01 20 32441791 32441791 G A CHMP4B 3'UTR 0.27 TCGA-EA-A6QX-01 21 33060778 33060778 C A SCAF4 Splice_Site p.X629_splice 0.39 TCGA-EA-A6QX-01 21 38505018 38505018 G A TTC3 Silent p.K465K 0.42 TCGA-EA-A6QX-01 21 47845794 47845794 C G PCNT Nonsense_Mutation p.S2410* 0.13 TCGA-EA-A6QX-01 22 35804402 35804402 G A MCM5 Missense_Mutation p.D200N 0.28 tolerated(0.43) benign(0.001) TCGA-EA-A6QX-01 22 43465794 43465794 G A TTLL1 Missense_Mutation p.S57L 0.77 tolerated(0.11) benign(0.102) TCGA-EA-A6QX-01 22 45810212 45810212 G A RIBC2 Missense_Mutation p.E42K 0.12 tolerated(0.12) benign(0.009) TCGA-EA-A6QX-01 22 47569271 47569271 C T TBC1D22A 3'UTR 0.09 TCGA-EA-A6QX-01 2 120439094 120439094 C G TMEM177 Missense_Mutation p.S222C 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-EA-A6QX-01 2 16086128 16086128 C T MYCN Missense_Mutation p.A435V 0.34 deleterious(0.05) probably_damaging(0.935) TCGA-EA-A6QX-01 2 170068628 170068628 C T LRP2 Missense_Mutation p.A2044T 0.30 possibly_damaging(0.848) TCGA-EA-A6QX-01 2 200188528 200188528 G A SATB2 Nonsense_Mutation p.Q514* 0.06 TCGA-EA-A6QX-01 2 201844021 201844021 G C FAM126B 3'UTR 0.33 TCGA-EA-A6QX-01 2 42997641 42997641 G C HAAO Missense_Mutation p.I144M 0.40 deleterious(0.04) probably_damaging(0.915) TCGA-EA-A6QX-01 2 84756217 84756217 G A DNAH6 Missense_Mutation p.E197K 0.15 tolerated(0.84) benign(0.001) TCGA-EA-A6QX-01 3 101390782 101390786 TAGTT - ZBTB11 Intron 0.09 TCGA-EA-A6QX-01 3 128199829 128199829 G A GATA2 3'UTR 0.39 TCGA-EA-A6QX-01 3 128813826 128813826 C T RAB43 Intron 0.17 TCGA-EA-A6QX-01 3 1415661 1415661 C T CNTN6 Missense_Mutation p.P667S 0.68 deleterious(0.02) benign(0.167) TCGA-EA-A6QX-01 3 169684476 169684476 C T SEC62 5'Flank 0.46 TCGA-EA-A6QX-01 3 43074889 43074889 G A FAM198A Silent p.L378L 0.62 TCGA-EA-A6QX-01 3 5220573 5220573 C G ARL8B 3'UTR 0.14 TCGA-EA-A6QX-01 4 141264834 141264834 C G RP11-425I13.3 Intron 0.42 TCGA-EA-A6QX-01 5 140077661 140077661 G A HARS2 Missense_Mutation p.E487K 0.32 deleterious(0.02) possibly_damaging(0.836) TCGA-EA-A6QX-01 5 140730212 140730212 C T PCDHGB1 Missense_Mutation p.R129C 0.29 tolerated(0.07) benign(0.002) TCGA-EA-A6QX-01 5 150889679 150889679 C G FAT2 Missense_Mutation p.E3988Q 0.15 benign(0.003) TCGA-EA-A6QX-01 5 167642273 167642273 G A TENM2 Silent p.P1358P 0.35 TCGA-EA-A6QX-01 6 146755620 146755620 C T GRM1 Silent p.S1091S 0.69 TCGA-EA-A6QX-01 6 150005408 150005408 G A LATS1 Nonsense_Mutation p.Q273* 0.75 TCGA-EA-A6QX-01 6 50810907 50810907 C T TFAP2B Silent p.L395L 0.21 TCGA-EA-A6QX-01 7 117824262 117824262 C T NAA38 5'UTR 0.15 TCGA-EA-A6QX-01 7 120596041 120596041 A T ING3 Intron 0.56 TCGA-EA-A6QX-01 7 126249491 126249491 G A GRM8 Silent p.I473I 0.38 TCGA-EA-A6QX-01 7 131913203 131913203 G A PLXNA4 Missense_Mutation p.R544W 0.38 deleterious(0.01) probably_damaging(1) TCGA-EA-A6QX-01 7 137761304 137761304 G A AKR1D1 Missense_Mutation p.D14N 0.12 deleterious(0.01) benign(0.198) TCGA-EA-A6QX-01 7 55242423 55242423 G A EGFR Nonsense_Mutation p.W731* 0.30 TCGA-EA-A6QX-01 9 139906184 139906184 G A ABCA2 Silent p.P1851P 0.46 TCGA-EA-A6QX-01 9 17487056 17487056 G A CNTLN Missense_Mutation p.E1371K 0.49 deleterious(0.03) benign(0.088) TCGA-EA-A6QX-01 9 3828137 3828137 G C GLIS3 3'UTR 0.08 TCGA-EA-A6QX-01 9 6434148 6434148 G A UHRF2 Missense_Mutation p.V207I 0.48 tolerated(0.94) benign(0.004) TCGA-EA-A6QX-01 X 100613645 100613645 C A BTK Missense_Mutation p.A312S 0.48 tolerated(0.28) benign(0.185) TCGA-EA-A6QX-01 X 108886262 108886262 G C ACSL4 3'UTR 0.40 TCGA-EA-A6QX-01 X 114427335 114427335 G C RBMXL3 3'UTR 0.36 TCGA-EA-A6QX-01 X 117529256 117529256 G T WDR44 Silent p.V334V 0.48 TCGA-EA-A6QX-01 X 123680777 123680777 G A TENM1 Silent p.L866L 0.27 TCGA-EA-A6QX-01 X 147733596 147733596 G A AFF2 Missense_Mutation p.D42N 0.41 tolerated(0.09) probably_damaging(0.995) TCGA-EA-A6QX-01 X 14934348 14934348 C T MOSPD2 Silent p.L406L 0.27 TCGA-EA-A6QX-01 X 149937413 149937413 G - CD99L2 3'UTR 0.31 TCGA-EA-A6QX-01 X 19007913 19007913 G A GPR64 3'UTR 0.29 TCGA-EA-A78R-01 10 115383353 115383353 A C NRAP Missense_Mutation p.F798V 0.31 deleterious(0.01) benign(0.066) TCGA-EA-A78R-01 10 15290684 15290684 C T FAM171A1 Silent p.L236L 0.14 TCGA-EA-A78R-01 10 5008127 5008127 G C AKR1C1 Missense_Mutation p.E36Q 0.18 deleterious(0.04) benign(0.294) TCGA-EA-A78R-01 10 70405157 70405157 G T TET1 Missense_Mutation p.V891L 0.24 deleterious(0.04) benign(0.015) TCGA-EA-A78R-01 10 82034850 82034850 G A MAT1A Missense_Mutation p.R292C 0.21 deleterious(0) probably_damaging(0.999) TCGA-EA-A78R-01 11 100912793 100912793 C G PGR Missense_Mutation p.E843D 0.26 deleterious(0.04) benign(0.227) TCGA-EA-A78R-01 11 116631614 116631614 C T BUD13 Missense_Mutation p.S364N 0.24 tolerated(0.39) benign(0.003) TCGA-EA-A78R-01 11 57069935 57069935 C T TNKS1BP1 Missense_Mutation p.E1561K 0.14 deleterious(0) probably_damaging(0.986) TCGA-EA-A78R-01 11 58920313 58920313 T C FAM111A Missense_Mutation p.V391A 0.25 tolerated(0.08) probably_damaging(0.985) TCGA-EA-A78R-01 12 106457278 106457278 G C NUAK1 3'UTR 0.23 TCGA-EA-A78R-01 12 42858228 42858228 C T PRICKLE1 Silent p.S536S 0.18 TCGA-EA-A78R-01 12 54764831 54764831 G C ZNF385A Missense_Mutation p.I238M 0.26 deleterious(0.01) probably_damaging(0.947) TCGA-EA-A78R-01 12 6804096 6804096 G T PIANP 3'UTR 0.38 TCGA-EA-A78R-01 13 48954327 48954328 AT - RB1 Frame_Shift_Del p.M484Vfs*8 0.17 TCGA-EA-A78R-01 13 99554035 99554035 A G DOCK9 Silent p.S500S 0.24 TCGA-EA-A78R-01 14 102452449 102452449 G A DYNC1H1 Silent p.Q629Q 0.13 TCGA-EA-A78R-01 14 105269550 105269550 G A ZBTB42 3'UTR 0.38 TCGA-EA-A78R-01 14 50269245 50269245 C T NEMF Missense_Mutation p.R674K 0.27 tolerated(0.84) benign(0.001) TCGA-EA-A78R-01 14 75134036 75134036 C T AREL1 Missense_Mutation p.E697K 0.15 deleterious(0) probably_damaging(0.995) TCGA-EA-A78R-01 14 78189584 78189584 T A SNW1 Missense_Mutation p.H357L 0.32 tolerated(0.49) benign(0.002) TCGA-EA-A78R-01 15 35166878 35166878 C T AQR Missense_Mutation p.S1142N 0.18 deleterious(0.01) possibly_damaging(0.568) TCGA-EA-A78R-01 15 72454130 72454130 G C GRAMD2 3'UTR 0.24 TCGA-EA-A78R-01 16 27353578 27353578 C T IL4R Silent p.S69S 0.23 TCGA-EA-A78R-01 16 4016873 4016873 G T ADCY9 Missense_Mutation p.L989M 0.17 deleterious(0.01) probably_damaging(0.923) TCGA-EA-A78R-01 16 67405106 67405106 G T LRRC36 Silent p.L485L 0.19 TCGA-EA-A78R-01 16 68023268 68023268 G C DPEP2 Missense_Mutation p.S343C 0.21 tolerated(0.06) benign(0.412) TCGA-EA-A78R-01 16 841233 841233 C T CHTF18 Missense_Mutation p.R323W 0.07 deleterious(0.02) benign(0.016) TCGA-EA-A78R-01 17 1637052 1637052 C T WDR81 Missense_Mutation p.S1574F 0.25 deleterious(0.03) benign(0.272) TCGA-EA-A78R-01 17 37094979 37094979 C G FBXO47 Missense_Mutation p.E364Q 0.23 tolerated(0.05) benign(0.111) TCGA-EA-A78R-01 17 40704901 40704901 G A HSD17B1 5'UTR 0.23 TCGA-EA-A78R-01 17 4859382 4859382 C T ENO3 Silent p.C337C 0.38 TCGA-EA-A78R-01 17 73060198 73060198 T C KCTD2 3'UTR 0.42 TCGA-EA-A78R-01 17 73998149 73998149 G A CDK3 Missense_Mutation p.E81K 0.17 deleterious(0) probably_damaging(1) TCGA-EA-A78R-01 17 74475884 74475884 C T RHBDF2 Missense_Mutation p.R97Q 0.16 tolerated_low_confidence(0.22) benign(0.002) TCGA-EA-A78R-01 17 7755345 7755345 C T KDM6B Silent p.H1414H 0.10 TCGA-EA-A78R-01 17 78071135 78071135 C T CCDC40 Missense_Mutation p.S1038L 0.17 tolerated(0.14) benign(0.049) TCGA-EA-A78R-01 17 79219289 79219289 G A SLC38A10 3'UTR 0.19 TCGA-EA-A78R-01 18 22807606 22807606 A G ZNF521 Silent p.S92S 0.19 TCGA-EA-A78R-01 18 72776568 72776568 G C ZNF407 3'UTR 0.17 TCGA-EA-A78R-01 19 3656474 3656474 C T PIP5K1C Missense_Mutation p.E184K 0.19 deleterious(0.03) probably_damaging(0.95) TCGA-EA-A78R-01 19 50102572 50102572 C G PRR12 Nonsense_Mutation p.S1241* 0.35 TCGA-EA-A78R-01 19 8491634 8491634 C T MARCH2 Silent p.C106C 0.17 TCGA-EA-A78R-01 19 9225977 9225977 C T OR7G1 Missense_Mutation p.D155N 0.19 tolerated(0.69) benign(0.133) TCGA-EA-A78R-01 1 147078585 147078585 C T BCL9 5'UTR 0.24 TCGA-EA-A78R-01 1 150307413 150307413 G C PRPF3 Missense_Mutation p.E246Q 0.24 tolerated(0.33) benign(0.017) TCGA-EA-A78R-01 1 153721203 153721203 A G INTS3 Missense_Mutation p.S186G 0.19 tolerated(0.35) benign(0.053) TCGA-EA-A78R-01 1 155287590 155287590 G A FDPS Intron 0.31 TCGA-EA-A78R-01 1 156622156 156622156 G A BCAN Missense_Mutation p.E472K 0.12 tolerated(0.4) benign(0.383) TCGA-EA-A78R-01 1 17735520 17735520 G A RCC2 3'UTR 0.21 TCGA-EA-A78R-01 1 19420536 19420536 C T UBR4 Missense_Mutation p.G4615D 0.18 probably_damaging(0.998) TCGA-EA-A78R-01 1 200950185 200950185 C T KIF21B Silent p.R1294R 0.23 TCGA-EA-A78R-01 1 201984412 201984412 C T ELF3 Silent p.S359S 0.19 TCGA-EA-A78R-01 1 43895462 43895462 G A SZT2 Missense_Mutation p.D1362N 0.28 tolerated(0.45) benign(0.423) TCGA-EA-A78R-01 1 94650482 94650482 A G ARHGAP29 Silent p.P685P 0.05 TCGA-EA-A78R-01 20 60886121 60886121 C T LAMA5 Missense_Mutation p.R3373Q 0.24 possibly_damaging(0.792) TCGA-EA-A78R-01 20 61291826 61291826 C T SLCO4A1 Missense_Mutation p.S317F 0.19 deleterious(0) possibly_damaging(0.74) TCGA-EA-A78R-01 22 32218706 32218706 C T DEPDC5 Silent p.D678D 0.17 TCGA-EA-A78R-01 2 179435285 179435285 C T TTN Missense_Mutation p.E25192K 0.18 TCGA-EA-A78R-01 2 201846020 201846020 G C FAM126B Missense_Mutation p.F522L 0.13 tolerated(0.23) probably_damaging(0.952) TCGA-EA-A78R-01 2 25170541 25170541 C T DNAJC27 Missense_Mutation p.D256N 0.22 deleterious(0) probably_damaging(0.932) TCGA-EA-A78R-01 2 47135004 47135004 T C MCFD2 Missense_Mutation p.N85S 0.16 deleterious(0) probably_damaging(0.997) TCGA-EA-A78R-01 3 119301229 119301229 G T ADPRH Silent p.G71G 0.20 TCGA-EA-A78R-01 3 185764531 185764531 C T ETV5 3'UTR 0.11 TCGA-EA-A78R-01 3 188327575 188327575 G A LPP Silent p.K352K 0.22 TCGA-EA-A78R-01 3 194080554 194080554 C T LRRC15 Missense_Mutation p.G413S 0.15 tolerated(0.1) probably_damaging(0.937) TCGA-EA-A78R-01 3 41504718 41504718 G C ULK4 Missense_Mutation p.L1085V 0.20 tolerated(0.09) benign(0.2) TCGA-EA-A78R-01 3 46542393 46542393 T A RTP3 3'UTR 0.28 TCGA-EA-A78R-01 3 57493377 57493377 G C DNAH12 Nonsense_Mutation p.S297* 0.20 TCGA-EA-A78R-01 4 122605888 122605888 G A ANXA5 Nonsense_Mutation p.R45* 0.27 TCGA-EA-A78R-01 4 187527311 187527311 G A FAT1 Silent p.V3421V 0.26 TCGA-EA-A78R-01 4 25125674 25125674 C G SEPSECS Missense_Mutation p.R462T 0.17 deleterious(0.03) benign(0.005) TCGA-EA-A78R-01 5 153854856 153854856 G A HAND1 3'UTR 0.10 TCGA-EA-A78R-01 5 178139023 178139023 G C ZNF354A 3'UTR 0.14 TCGA-EA-A78R-01 5 67589577 67589582 AAAAAT - PIK3R1 In_Frame_Del p.K447_L449delinsI 0.24 TCGA-EA-A78R-01 6 24559315 24559315 C T KIAA0319 Missense_Mutation p.R887Q 0.32 tolerated(0.33) benign(0.015) TCGA-EA-A78R-01 6 28227227 28227227 C T NKAPL Silent p.S26S 0.16 TCGA-EA-A78R-01 6 33382565 33382565 T C PHF1 Silent p.P336P 0.07 TCGA-EA-A78R-01 6 33990292 33990292 G A GRM4 3'UTR 0.21 TCGA-EA-A78R-01 7 150918700 150918700 G A ABCF2 Silent p.I295I 0.31 TCGA-EA-A78R-01 8 105502134 105502134 T C LRP12 3'UTR 0.23 TCGA-EA-A78R-01 8 39775486 39775486 G - IDO1 Frame_Shift_Del p.K61Sfs*2 0.22 TCGA-EA-A78R-01 9 127618159 127618159 G A WDR38 Silent p.E109E 0.16 TCGA-EA-A78R-01 9 127990332 127990332 G C RABEPK Missense_Mutation p.D224H 0.18 deleterious(0.02) probably_damaging(0.961) TCGA-EA-A78R-01 9 130026106 130026106 T C GARNL3 5'Flank 0.21 TCGA-EA-A78R-01 9 13408355 13408355 C T RP11-536O18.2 RNA 0.10 TCGA-EA-A78R-01 9 140094220 140094220 A G TPRN Missense_Mutation p.L315P 0.16 deleterious(0.02) benign(0.021) TCGA-EA-A78R-01 9 79897050 79897050 C T VPS13A Missense_Mutation p.S993F 0.23 deleterious(0) probably_damaging(0.953) TCGA-EA-A78R-01 X 108696942 108696942 C G GUCY2F Missense_Mutation p.L393F 0.22 tolerated(0.31) probably_damaging(0.979) TCGA-EA-A78R-01 X 47496193 47496193 G A ELK1 3'UTR 0.19 TCGA-EA-A78R-01 X 54800550 54800550 G A ITIH6 Silent p.D289D 0.21 TCGA-EA-A78R-01 X 57146635 57146635 G A SPIN2B Missense_Mutation p.S143F 0.14 deleterious(0.02) possibly_damaging(0.836) TCGA-EA-A78R-01 X 85117994 85117994 C T CHM 3'UTR 0.04 TCGA-EA-A97N-01 10 100995513 100995513 G C HPSE2 Missense_Mutation p.S16C 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.514) TCGA-EA-A97N-01 10 105452788 105452788 G A SH3PXD2A Missense_Mutation p.S142L 0.09 deleterious(0.04) benign(0.067) TCGA-EA-A97N-01 10 126307271 126307271 T C FAM53B 3'Flank 0.22 TCGA-EA-A97N-01 10 134735605 134735605 C T TTC40 Intron 0.12 TCGA-EA-A97N-01 10 14891723 14891723 C T HSPA14 Missense_Mutation p.T127M 0.33 deleterious(0.02) possibly_damaging(0.896) TCGA-EA-A97N-01 10 17747738 17747738 C T STAM Nonsense_Mutation p.Q403* 0.26 TCGA-EA-A97N-01 10 19884123 19884123 G A MALRD1 Missense_Mutation p.G1273D 0.18 tolerated(0.08) possibly_damaging(0.683) TCGA-EA-A97N-01 10 28905194 28905194 G A WAC Missense_Mutation p.R550Q 0.24 tolerated(0.21) possibly_damaging(0.842) TCGA-EA-A97N-01 10 61788887 61788887 A T ANK3 3'UTR 0.19 TCGA-EA-A97N-01 10 90694774 90694774 G A ACTA2 3'Flank 0.21 TCGA-EA-A97N-01 11 116692237 116692237 C T APOA4 Silent p.L179L 0.21 TCGA-EA-A97N-01 11 17515883 17515883 C T USH1C Missense_Mutation p.R899H 0.36 unknown(0) TCGA-EA-A97N-01 11 212935 212935 G A RIC8A Missense_Mutation p.E443K 0.19 deleterious(0.02) possibly_damaging(0.468) TCGA-EA-A97N-01 11 2424016 2424016 G A TSSC4 Silent p.P51P 0.08 TCGA-EA-A97N-01 11 2434218 2434218 C T TRPM5 Silent p.P707P 0.31 TCGA-EA-A97N-01 11 46895142 46895142 C T LRP4 Missense_Mutation p.R1411Q 0.23 tolerated(0.05) possibly_damaging(0.833) TCGA-EA-A97N-01 11 55861596 55861596 G A OR8I2 Silent p.Q271Q 0.30 TCGA-EA-A97N-01 11 62678072 62678072 C T CHRM1 Silent p.L167L 0.11 TCGA-EA-A97N-01 11 66436583 66436583 G A RBM4B Nonsense_Mutation p.R198* 0.11 TCGA-EA-A97N-01 11 6741722 6741722 G A GVINP1 RNA 0.30 TCGA-EA-A97N-01 12 106734735 106734735 C G TCP11L2 Nonsense_Mutation p.S425* 0.28 TCGA-EA-A97N-01 12 113314460 113314460 C T RPH3A Silent p.S320S 0.12 TCGA-EA-A97N-01 12 117705869 117705869 G A NOS1 Silent p.I640I 0.20 TCGA-EA-A97N-01 12 120941227 120941227 G A COQ5 3'UTR 0.20 TCGA-EA-A97N-01 12 20833152 20833152 G A PDE3A Missense_Mutation p.E1125K 0.19 deleterious(0) benign(0.292) TCGA-EA-A97N-01 12 2983307 2983307 C T FOXM1 Missense_Mutation p.G113E 0.12 deleterious(0.03) possibly_damaging(0.844) TCGA-EA-A97N-01 12 41463944 41463944 A C CNTN1 3'UTR 0.14 TCGA-EA-A97N-01 12 42854029 42854029 C T PRICKLE1 Missense_Mutation p.R693K 0.08 tolerated(0.08) benign(0.003) TCGA-EA-A97N-01 12 47173745 47173745 C G SLC38A4 Missense_Mutation p.E188Q 0.08 tolerated(0.13) possibly_damaging(0.612) TCGA-EA-A97N-01 12 51636295 51636295 C G DAZAP2 Missense_Mutation p.F161L 0.11 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-EA-A97N-01 12 54575457 54575457 G A SMUG1 3'UTR 0.20 TCGA-EA-A97N-01 12 8549147 8549147 C T LINC00937 RNA 0.21 TCGA-EA-A97N-01 13 101184495 101184495 G A GGACT Silent p.F117F 0.06 TCGA-EA-A97N-01 13 111531130 111531130 C G ANKRD10 3'UTR 0.12 TCGA-EA-A97N-01 13 25744855 25744855 C G AMER2 Silent p.A301A 0.20 TCGA-EA-A97N-01 13 28014220 28014220 G A MTIF3 Silent p.S122S 0.07 TCGA-EA-A97N-01 13 46161357 46161357 C T FAM194B Missense_Mutation p.A233T 0.26 tolerated(0.5) benign(0.081) TCGA-EA-A97N-01 13 52548834 52548834 G C ATP7B Silent p.V174V 0.12 TCGA-EA-A97N-01 13 64413307 64413307 G C RP11-394A14.2 RNA 0.15 TCGA-EA-A97N-01 13 74266115 74266115 C T KLF12 3'UTR 0.06 TCGA-EA-A97N-01 14 105361889 105361889 C G CEP170B 3'UTR 0.14 TCGA-EA-A97N-01 14 24113317 24113317 C T DHRS2 Intron 0.21 TCGA-EA-A97N-01 14 26915587 26915587 G C NOVA1 3'UTR 0.11 TCGA-EA-A97N-01 14 45644448 45644448 G T FANCM Nonsense_Mutation p.E831* 0.32 TCGA-EA-A97N-01 14 59930296 59930296 G C GPR135 3'UTR 0.05 TCGA-EA-A97N-01 14 63758383 63758383 G T RHOJ 3'UTR 0.39 TCGA-EA-A97N-01 14 69951802 69951802 C T PLEKHD1 Silent p.F40F 0.16 TCGA-EA-A97N-01 14 86089529 86089529 C T FLRT2 Silent p.V557V 0.25 TCGA-EA-A97N-01 15 31233678 31233678 C T MTMR10 Missense_Mutation p.D777N 0.18 tolerated(0.06) possibly_damaging(0.848) TCGA-EA-A97N-01 15 31233681 31233681 C T MTMR10 Missense_Mutation p.E776K 0.20 deleterious(0.01) possibly_damaging(0.777) TCGA-EA-A97N-01 15 41667929 41667929 G C NUSAP1 Missense_Mutation p.L342F 0.25 tolerated(1) benign(0.024) TCGA-EA-A97N-01 15 74326863 74326863 G A PML Missense_Mutation p.E568K 0.16 deleterious(0) probably_damaging(0.958) TCGA-EA-A97N-01 15 78878999 78878999 C T CHRNA5 Nonsense_Mutation p.Q91* 0.17 TCGA-EA-A97N-01 15 79264251 79264251 C A RASGRF1 Missense_Mutation p.R1229L 0.21 deleterious(0) probably_damaging(0.947) TCGA-EA-A97N-01 15 93587776 93587776 G A RGMA 3'Flank 0.24 TCGA-EA-A97N-01 16 11870310 11870310 C T ZC3H7A Missense_Mutation p.E182K 0.10 tolerated(0.66) benign(0.002) TCGA-EA-A97N-01 16 15977951 15977951 G A FOPNL Missense_Mutation p.S47F 0.13 deleterious(0) probably_damaging(0.995) TCGA-EA-A97N-01 16 2495468 2495468 G A CCNF Silent p.L313L 0.14 TCGA-EA-A97N-01 16 2511789 2511789 C T C16orf59 Missense_Mutation p.S216F 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-EA-A97N-01 16 29982897 29982897 C T TMEM219 Intron 0.10 TCGA-EA-A97N-01 16 58608935 58608935 G A CNOT1 Silent p.L601L 0.20 TCGA-EA-A97N-01 16 84034351 84034351 G A NECAB2 Missense_Mutation p.D329N 0.22 tolerated(0.26) probably_damaging(0.998) TCGA-EA-A97N-01 16 87364963 87364963 C T FBXO31 Silent p.R517R 0.20 TCGA-EA-A97N-01 16 89845371 89845371 C T FANCA Missense_Mutation p.A586T 0.20 deleterious(0.02) possibly_damaging(0.499) TCGA-EA-A97N-01 17 15909834 15909834 G C TTC19 Missense_Mutation p.E210Q 0.19 deleterious(0) probably_damaging(0.991) TCGA-EA-A97N-01 17 1839046 1839046 T G RTN4RL1 3'UTR 0.32 TCGA-EA-A97N-01 17 3583044 3583044 C G P2RX5 Missense_Mutation p.E367Q 0.19 tolerated(0.38) benign(0.006) TCGA-EA-A97N-01 17 40086995 40086995 G A TTC25 RNA 0.13 TCGA-EA-A97N-01 17 41139429 41139429 C T RUNDC1 Missense_Mutation p.R219W 0.34 deleterious(0) possibly_damaging(0.677) TCGA-EA-A97N-01 17 56440663 56440663 C T RNF43 Silent p.R185R 0.10 TCGA-EA-A97N-01 17 66423349 66423349 G C WIPI1 Silent p.L373L 0.05 TCGA-EA-A97N-01 17 72368154 72368154 C T GPR142 Silent p.A268A 0.19 TCGA-EA-A97N-01 17 72956208 72956208 G C HID1 Silent p.L288L 0.67 TCGA-EA-A97N-01 17 72956217 72956217 G C HID1 Silent p.A285A 0.71 TCGA-EA-A97N-01 17 73489577 73489577 G A KIAA0195 Missense_Mutation p.E698K 0.12 tolerated(0.05) benign(0.41) TCGA-EA-A97N-01 17 80789680 80789681 CT - ZNF750 Frame_Shift_Del p.E217Vfs*4 0.53 TCGA-EA-A97N-01 17 9503396 9503396 G A WDR16 Missense_Mutation p.D217N 0.08 deleterious(0.04) probably_damaging(0.996) TCGA-EA-A97N-01 18 14479201 14479201 G C CXADRP3 RNA 0.10 TCGA-EA-A97N-01 18 31319895 31319895 G C ASXL3 Missense_Mutation p.D843H 0.18 possibly_damaging(0.534) TCGA-EA-A97N-01 18 67996178 67996178 G A SOCS6 3'UTR 0.16 TCGA-EA-A97N-01 19 13323451 13323451 C T CACNA1A Missense_Mutation p.G2015E 0.05 probably_damaging(0.969) TCGA-EA-A97N-01 19 14043522 14043522 C T PODNL1 Nonsense_Mutation p.W512* 0.23 TCGA-EA-A97N-01 19 15754719 15754719 C T CYP4F3 Intron 0.28 TCGA-EA-A97N-01 19 19790468 19790468 C T ZNF101 Missense_Mutation p.R224C 0.21 deleterious(0) possibly_damaging(0.835) TCGA-EA-A97N-01 19 22364155 22364155 A G ZNF676 Missense_Mutation p.F122L 0.11 tolerated(0.05) benign(0.158) TCGA-EA-A97N-01 19 35175563 35175563 G A ZNF302 Silent p.G207G 0.07 TCGA-EA-A97N-01 19 3740612 3740612 C T TJP3 Missense_Mutation p.S574F 0.27 deleterious(0) possibly_damaging(0.583) TCGA-EA-A97N-01 19 38572458 38572458 G A SIPA1L3 Missense_Mutation p.D85N 0.05 deleterious(0) probably_damaging(0.988) TCGA-EA-A97N-01 19 38834255 38834255 G A CATSPERG Silent p.T120T 0.17 TCGA-EA-A97N-01 19 4216902 4216902 C T ANKRD24 Missense_Mutation p.T582M 0.14 tolerated_low_confidence(0.06) benign(0.037) TCGA-EA-A97N-01 19 42730345 42730345 G A ZNF526 Missense_Mutation p.R597Q 0.22 tolerated(0.44) benign(0.017) TCGA-EA-A97N-01 19 46997515 46997515 C T PNMAL2 Missense_Mutation p.R403H 0.22 deleterious(0) probably_damaging(0.96) TCGA-EA-A97N-01 19 53432323 53432323 G C ZNF321P Missense_Mutation p.Q179E 0.08 tolerated(0.14) benign(0.401) TCGA-EA-A97N-01 19 54725932 54725932 G C LILRB3 Silent p.L142L 0.08 TCGA-EA-A97N-01 19 55019353 55019353 C A LAIR2 Silent p.P106P 0.32 TCGA-EA-A97N-01 19 55221925 55221925 C T AC098784.2 3'Flank 0.18 TCGA-EA-A97N-01 19 613383 613383 G A HCN2 Missense_Mutation p.E574K 0.11 deleterious(0) possibly_damaging(0.898) TCGA-EA-A97N-01 19 9059509 9059509 G A MUC16 Missense_Mutation p.P9313S 0.07 unknown(0) TCGA-EA-A97N-01 1 113392459 113392459 G T RP11-426L16.8 RNA 0.32 TCGA-EA-A97N-01 1 114402066 114402066 G C PTPN22 Missense_Mutation p.S35C 0.09 deleterious(0) probably_damaging(0.99) TCGA-EA-A97N-01 1 12438578 12438578 G A VPS13D Missense_Mutation p.A3672T 0.22 benign(0) TCGA-EA-A97N-01 1 12461700 12461700 G C VPS13D Missense_Mutation p.E3942Q 0.05 probably_damaging(0.986) TCGA-EA-A97N-01 1 12921657 12921657 G C PRAMEF2 3'UTR 0.06 TCGA-EA-A97N-01 1 12943173 12943173 C G PRAMEF4 Missense_Mutation p.A15P 0.33 deleterious(0) probably_damaging(0.964) TCGA-EA-A97N-01 1 148341987 148341987 C T NBPF20 Missense_Mutation p.E196K 0.07 possibly_damaging(0.646) TCGA-EA-A97N-01 1 152286710 152286710 C T FLG Missense_Mutation p.E218K 0.41 possibly_damaging(0.637) TCGA-EA-A97N-01 1 154744540 154744540 C T KCNN3 Silent p.T453T 0.26 TCGA-EA-A97N-01 1 160654876 160654876 G A CD48 Silent p.F62F 0.21 TCGA-EA-A97N-01 1 162337510 162337510 G C NOS1AP 3'UTR 0.25 TCGA-EA-A97N-01 1 169823740 169823740 G A SCYL3 Missense_Mutation p.P614S 0.08 tolerated(0.27) benign(0.034) TCGA-EA-A97N-01 1 171080110 171080110 G A FMO3 Missense_Mutation p.E267K 0.09 tolerated(0.14) benign(0.168) TCGA-EA-A97N-01 1 192548329 192548329 G A RGS1 Silent p.T169T 0.19 TCGA-EA-A97N-01 1 200946397 200946397 G A KIF21B Missense_Mutation p.S1423L 0.06 deleterious(0.01) benign(0.005) TCGA-EA-A97N-01 1 205892227 205892227 G C SLC26A9 Missense_Mutation p.L586V 0.20 tolerated(0.4) possibly_damaging(0.462) TCGA-EA-A97N-01 1 216405333 216405333 G A USH2A Silent p.C985C 0.19 TCGA-EA-A97N-01 1 217665049 217665049 T G GPATCH2 Missense_Mutation p.K417T 0.10 tolerated(0.1) possibly_damaging(0.894) TCGA-EA-A97N-01 1 217665058 217665058 C T GPATCH2 Missense_Mutation p.G414E 0.10 deleterious(0) probably_damaging(0.985) TCGA-EA-A97N-01 1 224563722 224563722 C G CNIH4 3'UTR 0.08 TCGA-EA-A97N-01 1 248844705 248844705 T C OR14I1 Missense_Mutation p.R301G 0.15 deleterious(0) benign(0.199) TCGA-EA-A97N-01 1 248845489 248845489 C T OR14I1 Silent p.G39G 0.19 TCGA-EA-A97N-01 1 39894943 39894943 G A MACF1 Silent p.K3549K 0.14 TCGA-EA-A97N-01 1 40219110 40219110 G A PPIE Intron 0.14 TCGA-EA-A97N-01 1 4832353 4832353 G A AJAP1 Missense_Mutation p.G311R 0.50 deleterious(0) probably_damaging(0.98) TCGA-EA-A97N-01 1 53574166 53574166 C G SLC1A7 Intron 0.27 TCGA-EA-A97N-01 1 67207059 67207059 G A SGIP1 Missense_Mutation p.D802N 0.23 deleterious(0) benign(0.345) TCGA-EA-A97N-01 20 2125469 2125469 C T STK35 3'UTR 0.34 TCGA-EA-A97N-01 20 37078125 37078125 C T SNORA60 RNA 0.26 TCGA-EA-A97N-01 20 44995363 44995363 G A ELMO2 3'UTR 0.33 TCGA-EA-A97N-01 20 62705542 62705542 C T RGS19 Silent p.A139A 0.13 TCGA-EA-A97N-01 22 33255169 33255169 C G TIMP3 Missense_Mutation p.I147M 0.16 deleterious(0) probably_damaging(0.985) TCGA-EA-A97N-01 22 50904226 50904226 G A SBF1 Missense_Mutation p.P352L 0.21 deleterious(0.04) probably_damaging(1) TCGA-EA-A97N-01 2 128460592 128460592 G A WDR33 3'UTR 0.09 TCGA-EA-A97N-01 2 177188174 177188174 G A MTX2 Missense_Mutation p.E64K 0.22 deleterious(0.01) probably_damaging(0.929) TCGA-EA-A97N-01 2 179412254 179412254 G C TTN Missense_Mutation p.Q31367E 0.12 TCGA-EA-A97N-01 2 197085533 197085533 G A HECW2 Missense_Mutation p.R1427C 0.33 deleterious(0) probably_damaging(0.993) TCGA-EA-A97N-01 2 197577457 197577457 G C CCDC150 Silent p.L620L 0.33 TCGA-EA-A97N-01 2 229890482 229890482 C T PID1 Missense_Mutation p.E205K 0.19 tolerated(0.63) probably_damaging(0.994) TCGA-EA-A97N-01 2 27704080 27704080 T C IFT172 Silent p.A206A 0.24 TCGA-EA-A97N-01 2 73495925 73495925 C T FBXO41 Silent p.V278V 0.19 TCGA-EA-A97N-01 2 75094768 75094768 G A HK2 Missense_Mutation p.G78R 0.31 deleterious(0) probably_damaging(1) TCGA-EA-A97N-01 3 140419735 140419735 A G TRIM42 Silent p.V697V 0.08 TCGA-EA-A97N-01 3 142188961 142188961 C G ATR Missense_Mutation p.D2096H 0.08 deleterious(0) probably_damaging(1) TCGA-EA-A97N-01 3 154898458 154898458 C T MME 3'UTR 0.11 TCGA-EA-A97N-01 3 155199922 155199922 C T PLCH1 Missense_Mutation p.G1306E 0.12 tolerated_low_confidence(0.42) benign(0.003) TCGA-EA-A97N-01 3 155199923 155199923 C T PLCH1 Missense_Mutation p.G1306R 0.12 tolerated_low_confidence(0.58) benign(0.003) TCGA-EA-A97N-01 3 164704999 164704999 C T SI Missense_Mutation p.M1708I 0.07 deleterious(0.04) possibly_damaging(0.537) TCGA-EA-A97N-01 3 164732962 164732962 C T SI Silent p.Q1316Q 0.08 TCGA-EA-A97N-01 3 184049081 184049081 C T EIF4G1 Nonsense_Mutation p.R1404* 0.17 TCGA-EA-A97N-01 3 49940931 49940931 G C MST1R Missense_Mutation p.R38G 0.33 deleterious(0.02) possibly_damaging(0.852) TCGA-EA-A97N-01 3 98507230 98507230 C A ST3GAL6 Silent p.R227R 0.23 TCGA-EA-A97N-01 4 152048836 152048836 C T SH3D19 Silent p.P730P 0.23 TCGA-EA-A97N-01 4 159091996 159091996 G A FAM198B Nonsense_Mutation p.R178* 0.44 TCGA-EA-A97N-01 4 187005980 187005980 C T TLR3 Missense_Mutation p.R890C 0.43 deleterious(0.01) possibly_damaging(0.773) TCGA-EA-A97N-01 4 30921951 30921951 G A PCDH7 Silent p.T1117T 0.24 TCGA-EA-A97N-01 4 47527594 47527594 G C ATP10D Missense_Mutation p.E237D 0.26 tolerated(0.12) possibly_damaging(0.534) TCGA-EA-A97N-01 4 62936427 62936427 C T LPHN3 Missense_Mutation p.P1404L 0.37 tolerated_low_confidence(0.05) benign(0.036) TCGA-EA-A97N-01 4 96075899 96075899 C T BMPR1B 3'UTR 0.16 TCGA-EA-A97N-01 5 10261833 10261833 T A CCT5 Silent p.I385I 0.24 TCGA-EA-A97N-01 5 140532161 140532161 C T PCDHB6 Nonsense_Mutation p.Q775* 0.31 TCGA-EA-A97N-01 5 140755939 140755939 G A PCDHGA6 Silent p.S763S 0.39 TCGA-EA-A97N-01 5 5146509 5146509 C T ADAMTS16 Nonsense_Mutation p.Q148* 0.24 TCGA-EA-A97N-01 5 76129377 76129377 G C F2RL1 Missense_Mutation p.K315N 0.30 tolerated(0.26) benign(0.281) TCGA-EA-A97N-01 5 83238652 83238652 A G EDIL3 3'UTR 0.33 TCGA-EA-A97N-01 6 102372563 102372563 C T GRIK2 Silent p.F612F 0.22 TCGA-EA-A97N-01 6 102516513 102516513 G A GRIK2 3'UTR 0.16 TCGA-EA-A97N-01 6 10529990 10529990 C T GCNT2 Silent p.L282L 0.14 TCGA-EA-A97N-01 6 144164534 144164534 C T LTV1 5'UTR 0.13 TCGA-EA-A97N-01 6 144758879 144758879 C T UTRN Missense_Mutation p.S413F 0.14 deleterious(0.01) probably_damaging(0.94) TCGA-EA-A97N-01 6 160969593 160969593 G A LPA Missense_Mutation p.T1691M 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-EA-A97N-01 6 21596417 21596417 C G SOX4 3'UTR 0.27 TCGA-EA-A97N-01 6 35443786 35443786 C T TEAD3 Silent p.Q270Q 0.12 TCGA-EA-A97N-01 6 38790793 38790793 C T DNAH8 Missense_Mutation p.R1018C 0.28 possibly_damaging(0.676) TCGA-EA-A97N-01 6 42835033 42835033 C T GLTSCR1L 3'UTR 0.30 TCGA-EA-A97N-01 6 65300925 65300925 G A EYS Missense_Mutation p.S1612F 0.12 deleterious_low_confidence(0) benign(0.348) TCGA-EA-A97N-01 6 72922913 72922913 C T RIMS1 Intron 0.13 TCGA-EA-A97N-01 6 99771453 99771453 C T FAXC Silent p.L230L 0.10 TCGA-EA-A97N-01 7 100247661 100247661 G C ACTL6B Missense_Mutation p.A156G 0.15 deleterious(0.03) possibly_damaging(0.597) TCGA-EA-A97N-01 7 100683083 100683083 G A MUC17 Missense_Mutation p.E2796K 0.23 unknown(0) TCGA-EA-A97N-01 7 107603493 107603493 C G LAMB1 Missense_Mutation p.E572Q 0.08 tolerated(0.34) benign(0.007) TCGA-EA-A97N-01 7 26225265 26225266 AA - NFE2L3 Frame_Shift_Del p.D651* 0.27 TCGA-EA-A97N-01 7 45123817 45123817 C T NACAD Silent p.S654S 0.05 TCGA-EA-A97N-01 7 48287961 48287961 C T ABCA13 Silent p.L595L 0.15 TCGA-EA-A97N-01 7 913319 913319 C T SUN1 3'UTR 0.20 TCGA-EA-A97N-01 7 99054736 99054736 G A CPSF4 3'UTR 0.33 TCGA-EA-A97N-01 8 110457835 110457835 G A PKHD1L1 Missense_Mutation p.E1913K 0.17 tolerated(0.17) benign(0.027) TCGA-EA-A97N-01 8 120801942 120801942 C T TAF2 Silent p.Q486Q 0.15 TCGA-EA-A97N-01 8 145161127 145161127 G A MAF1 Missense_Mutation p.E121K 0.19 deleterious(0.04) possibly_damaging(0.764) TCGA-EA-A97N-01 8 15615303 15615303 T C TUSC3 Silent p.D344D 0.10 TCGA-EA-A97N-01 8 25181449 25181449 C T DOCK5 Silent p.H567H 0.11 TCGA-EA-A97N-01 8 3076819 3076819 C T CSMD1 Missense_Mutation p.D1544N 0.21 probably_damaging(0.999) TCGA-EA-A97N-01 8 36793542 36793542 C T KCNU1 3'UTR 0.31 TCGA-EA-A97N-01 8 61777686 61777686 G A CHD7 Missense_Mutation p.A2730T 0.22 probably_damaging(0.981) TCGA-EA-A97N-01 8 76478829 76478829 G A HNF4G 3'UTR 0.07 TCGA-EA-A97N-01 8 79514386 79514386 C T PKIA 3'UTR 0.33 TCGA-EA-A97N-01 8 82572858 82572858 G C IMPA1 Missense_Mutation p.A263G 0.15 deleterious(0) possibly_damaging(0.689) TCGA-EA-A97N-01 8 85097184 85097184 G A RALYL 5'UTR 0.15 TCGA-EA-A97N-01 8 86253852 86253852 C T CA1 Missense_Mutation p.D5N 0.21 tolerated(0.97) benign(0) TCGA-EA-A97N-01 8 87165150 87165150 G A ATP6V0D2 Missense_Mutation p.E333K 0.16 deleterious(0) probably_damaging(1) TCGA-EA-A97N-01 8 88886069 88886069 C T DCAF4L2 Missense_Mutation p.R44H 0.25 tolerated(0.06) benign(0.075) TCGA-EA-A97N-01 8 92352721 92352721 C T SLC26A7 Missense_Mutation p.S323L 0.11 deleterious(0) probably_damaging(0.999) TCGA-EA-A97N-01 9 121976264 121976264 G A BRINP1 Silent p.I285I 0.20 TCGA-EA-A97N-01 9 133308916 133308916 C T HMCN2 Missense_Mutation p.R736C 0.14 tolerated(0.05) possibly_damaging(0.799) TCGA-EA-A97N-01 9 8314510 8314510 C G PTPRD 3'UTR 0.27 TCGA-EA-A97N-01 X 12739842 12739842 A G FRMPD4 3'UTR 0.18 TCGA-EA-A97N-01 X 135638787 135638787 C T VGLL1 3'UTR 0.29 TCGA-EA-A97N-01 X 144910093 144910093 C G TMEM257 3'UTR 0.31 TCGA-EA-A97N-01 X 152128240 152128240 C T ZNF185 Intron 0.10 TCGA-EA-A97N-01 X 30254540 30254540 G A MAGEB3 Missense_Mutation p.D167N 0.29 deleterious(0) possibly_damaging(0.501) TCGA-EA-A97N-01 X 48661608 48661608 G A HDAC6 Missense_Mutation p.C99Y 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-EA-A97N-01 X 51486683 51486683 G A GSPT2 5'UTR 0.20 TCGA-EA-A97N-01 X 73956256 73956256 C G KIAA2022 3'UTR 0.26 TCGA-EK-A2GZ-01 10 118353847 118353847 G C PNLIPRP1 Intron 0.22 TCGA-EK-A2GZ-01 10 871711 871711 G A LARP4B Nonsense_Mutation p.R409* 0.20 TCGA-EK-A2GZ-01 11 14279441 14279441 G A RP11-21L19.1 3'Flank 0.47 TCGA-EK-A2GZ-01 11 20057524 20057524 G C NAV2 Missense_Mutation p.V953L 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-EK-A2GZ-01 11 57067525 57067525 G T TNKS1BP1 3'UTR 0.18 TCGA-EK-A2GZ-01 11 62519844 62519844 G A ZBTB3 Silent p.F481F 0.35 TCGA-EK-A2GZ-01 11 64666216 64666216 G T ATG2A Missense_Mutation p.F1521L 0.20 tolerated(0.3) benign(0.007) TCGA-EK-A2GZ-01 11 71507064 71507064 C T FAM86C1 Missense_Mutation p.T88M 0.31 tolerated(0.16) benign(0.002) TCGA-EK-A2GZ-01 11 85979514 85979514 A - EED Frame_Shift_Del p.I294Sfs*22 0.36 TCGA-EK-A2GZ-01 11 93431613 93431613 G A KIAA1731 Missense_Mutation p.A1179T 0.30 tolerated(0.18) possibly_damaging(0.853) TCGA-EK-A2GZ-01 12 123879787 123879787 C A SETD8 Silent p.I161I 0.13 TCGA-EK-A2GZ-01 12 133197642 133197642 C T P2RX2 Missense_Mutation p.S277L 0.32 deleterious(0) benign(0.041) TCGA-EK-A2GZ-01 12 48499772 48499772 C G PFKM 5'UTR 0.29 TCGA-EK-A2GZ-01 13 50008295 50008295 T C AL136218.1 Silent p.E39E 0.17 TCGA-EK-A2GZ-01 13 64320978 64320978 C T AL445989.1 Silent p.S15S 0.17 TCGA-EK-A2GZ-01 13 77454907 77454908 - AA KCTD12 3'UTR 0.21 TCGA-EK-A2GZ-01 14 30100144 30100144 G A PRKD1 Silent p.F492F 0.27 TCGA-EK-A2GZ-01 14 93424612 93424612 C T ITPK1 Missense_Mutation p.V202M 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-EK-A2GZ-01 14 93706009 93706009 C T BTBD7 3'UTR 0.55 TCGA-EK-A2GZ-01 15 23931920 23931920 G A NDN Missense_Mutation p.R149W 0.28 deleterious(0.01) probably_damaging(1) TCGA-EK-A2GZ-01 15 37001438 37001438 C T C15orf41 Missense_Mutation p.R187C 0.10 deleterious(0) probably_damaging(1) TCGA-EK-A2GZ-01 15 42129387 42129387 C T JMJD7 3'UTR 0.50 TCGA-EK-A2GZ-01 15 54799317 54799317 T A UNC13C Silent p.T1768T 0.19 TCGA-EK-A2GZ-01 15 65033002 65033002 G C RBPMS2 3'UTR 0.42 TCGA-EK-A2GZ-01 15 74637400 74637400 G T CYP11A1 Missense_Mutation p.R204S 0.21 deleterious(0) probably_damaging(0.953) TCGA-EK-A2GZ-01 15 91043413 91043413 C A IQGAP1 3'UTR 0.34 TCGA-EK-A2GZ-01 16 1470199 1470199 G T C16orf91 Missense_Mutation p.F272L 0.28 deleterious_low_confidence(0) benign(0.086) TCGA-EK-A2GZ-01 16 15123878 15123878 C T PDXDC1 Missense_Mutation p.T455M 0.05 tolerated(0.17) benign(0.053) TCGA-EK-A2GZ-01 16 57792637 57792645 CCGAGAGAC - KIFC3 3'UTR 0.41 TCGA-EK-A2GZ-01 16 69184470 69184470 G A CIRH1A Missense_Mutation p.E257K 0.33 deleterious(0.02) possibly_damaging(0.776) TCGA-EK-A2GZ-01 16 75263742 75263742 G A BCAR1 Silent p.N806N 0.28 TCGA-EK-A2GZ-01 17 10436605 10436605 C A MYH2 Missense_Mutation p.R813I 0.28 deleterious(0) possibly_damaging(0.817) TCGA-EK-A2GZ-01 17 15640800 15640800 A T TBC1D26 Missense_Mutation p.E54V 0.39 deleterious(0) benign(0.145) TCGA-EK-A2GZ-01 17 1637014 1637014 C T WDR81 Silent p.S1561S 0.35 TCGA-EK-A2GZ-01 17 28545258 28545258 C T SLC6A4 Silent p.T192T 0.09 TCGA-EK-A2GZ-01 17 42390802 42390802 G A RUNDC3A Missense_Mutation p.R130Q 0.46 deleterious(0.03) probably_damaging(0.993) TCGA-EK-A2GZ-01 17 48185735 48185735 C T PDK2 Missense_Mutation p.P272L 0.28 deleterious(0.01) possibly_damaging(0.492) TCGA-EK-A2GZ-01 17 60022790 60022790 G C MED13 3'UTR 0.35 TCGA-EK-A2GZ-01 17 74386994 74386994 C T UBE2O 3'UTR 0.25 TCGA-EK-A2GZ-01 17 80319923 80319923 C T TEX19 5'UTR 0.32 TCGA-EK-A2GZ-01 17 80724217 80724217 C T TBCD Silent p.V136V 0.24 TCGA-EK-A2GZ-01 18 22040735 22040735 C T HRH4 Missense_Mutation p.R15C 0.15 tolerated(0.14) benign(0.001) TCGA-EK-A2GZ-01 18 2707601 2707601 G A SMCHD1 Missense_Mutation p.E702K 0.12 tolerated(0.17) possibly_damaging(0.757) TCGA-EK-A2GZ-01 18 29409940 29409940 A C TRAPPC8 3'UTR 0.31 TCGA-EK-A2GZ-01 19 16918399 16918399 G A NWD1 Missense_Mutation p.E1247K 0.31 tolerated(0.34) benign(0.013) TCGA-EK-A2GZ-01 19 19790671 19790671 C T ZNF101 Silent p.L291L 0.18 TCGA-EK-A2GZ-01 19 30934829 30934829 C T ZNF536 Silent p.I120I 0.15 TCGA-EK-A2GZ-01 19 36034653 36034653 A - GAPDHS Frame_Shift_Del p.Y327Sfs*8 0.22 TCGA-EK-A2GZ-01 19 42507726 42507726 C T GRIK5 Silent p.E791E 0.30 TCGA-EK-A2GZ-01 19 42752618 42752618 C T ERF Silent p.%3D 0.37 TCGA-EK-A2GZ-01 19 56954013 56954013 T - ZNF667 Frame_Shift_Del p.A118Lfs*14 0.13 TCGA-EK-A2GZ-01 19 57293339 57293339 G A ZIM2 Missense_Mutation p.R210W 0.34 deleterious(0.02) probably_damaging(0.971) TCGA-EK-A2GZ-01 19 8464928 8464928 C T RAB11B Silent p.R74R 0.20 TCGA-EK-A2GZ-01 1 119962114 119962114 C G HSD3B2 Missense_Mutation p.C72W 0.05 deleterious(0) probably_damaging(0.999) TCGA-EK-A2GZ-01 1 154018618 154018618 G A NUP210L Missense_Mutation p.A1208V 0.36 tolerated(0.05) possibly_damaging(0.831) TCGA-EK-A2GZ-01 1 154296882 154296882 C T AQP10 Silent p.L278L 0.37 TCGA-EK-A2GZ-01 1 155630976 155630976 G A YY1AP1 Intron 0.08 TCGA-EK-A2GZ-01 1 155869133 155869133 C G RIT1 3'Flank 0.46 TCGA-EK-A2GZ-01 1 156814501 156814501 C T INSRR Missense_Mutation p.E858K 0.07 tolerated(0.08) probably_damaging(0.91) TCGA-EK-A2GZ-01 1 175049409 175049409 G C TNN Missense_Mutation p.G299R 0.07 tolerated(0.07) probably_damaging(0.978) TCGA-EK-A2GZ-01 1 186326620 186326620 C T TPR Missense_Mutation p.E545K 0.23 benign(0.292) TCGA-EK-A2GZ-01 1 20879344 20879344 C T FAM43B 5'UTR 0.30 TCGA-EK-A2GZ-01 1 230486817 230486817 C T PGBD5 Missense_Mutation p.D192N 0.33 deleterious(0.01) possibly_damaging(0.857) TCGA-EK-A2GZ-01 1 23689691 23689691 C T ZNF436 Missense_Mutation p.E62K 0.16 tolerated(0.15) benign(0.305) TCGA-EK-A2GZ-01 1 2528008 2528008 T C MMEL1 Missense_Mutation p.K465E 0.18 deleterious(0) probably_damaging(0.911) TCGA-EK-A2GZ-01 1 43391729 43391729 C T SLC2A1 3'UTR 0.25 TCGA-EK-A2GZ-01 1 53308582 53308582 C T ZYG11A Silent p.H9H 0.19 TCGA-EK-A2GZ-01 1 8925483 8925483 G A ENO1 Silent p.I242I 0.10 TCGA-EK-A2GZ-01 20 45023165 45023165 C A ELMO2 5'UTR 0.47 TCGA-EK-A2GZ-01 20 62121919 62121919 G A EEF1A2 Silent p.N314N 0.40 TCGA-EK-A2GZ-01 22 21354527 21354527 C T THAP7 Missense_Mutation p.C191Y 0.31 tolerated(0.27) benign(0.197) TCGA-EK-A2GZ-01 22 24086430 24086430 G A ZNF70 Missense_Mutation p.R300W 0.31 deleterious(0) probably_damaging(1) TCGA-EK-A2GZ-01 22 47103759 47103759 C G CERK Silent p.R232R 0.26 TCGA-EK-A2GZ-01 22 51015042 51015042 G A CPT1B Missense_Mutation p.R162W 0.13 tolerated(0.06) possibly_damaging(0.762) TCGA-EK-A2GZ-01 2 121107879 121107879 G A INHBB 3'UTR 0.47 TCGA-EK-A2GZ-01 2 15427261 15427261 G A NBAS Missense_Mutation p.R1692C 0.13 deleterious(0) probably_damaging(0.98) TCGA-EK-A2GZ-01 2 186678497 186678497 G A FSIP2 Missense_Mutation p.D6774N 0.12 benign(0.007) TCGA-EK-A2GZ-01 2 197565863 197565863 G T CCDC150 Nonsense_Mutation p.E552* 0.31 TCGA-EK-A2GZ-01 3 127323781 127323781 G A MCM2 Missense_Mutation p.R152H 0.21 tolerated(0.13) probably_damaging(0.982) TCGA-EK-A2GZ-01 3 167183309 167183309 C T SERPINI2 Missense_Mutation p.V211I 0.62 tolerated(0.14) benign(0.032) TCGA-EK-A2GZ-01 3 28476698 28476698 G A ZCWPW2 Missense_Mutation p.D144N 0.17 tolerated(0.24) benign(0.131) TCGA-EK-A2GZ-01 3 47629584 47629584 G T SMARCC1 3'UTR 0.25 TCGA-EK-A2GZ-01 4 113360956 113360956 G A ALPK1 Missense_Mutation p.E1156K 0.22 deleterious(0) possibly_damaging(0.62) TCGA-EK-A2GZ-01 5 132215055 132215055 A G AFF4 3'UTR 0.61 TCGA-EK-A2GZ-01 5 140250026 140250026 C T PCDHA11 Silent p.D446D 0.31 TCGA-EK-A2GZ-01 5 148747993 148747993 G C PCYOX1L Missense_Mutation p.E421Q 0.14 tolerated(0.29) benign(0.284) TCGA-EK-A2GZ-01 5 154252151 154252151 G A CNOT8 Silent p.R223R 0.16 TCGA-EK-A2GZ-01 5 154252202 154252202 G C CNOT8 Missense_Mutation p.R240S 0.11 deleterious(0.02) benign(0.403) TCGA-EK-A2GZ-01 5 21755934 21755934 C T CDH12 Missense_Mutation p.E551K 0.09 deleterious(0.02) benign(0.122) TCGA-EK-A2GZ-01 5 42719347 42719347 G A GHR Missense_Mutation p.G580R 0.26 tolerated(0.36) probably_damaging(0.968) TCGA-EK-A2GZ-01 6 168351979 168351979 G A MLLT4 Silent p.Q1308Q 0.16 TCGA-EK-A2GZ-01 6 25042096 25042096 C T RP11-367G6.3 RNA 0.19 TCGA-EK-A2GZ-01 6 33373178 33373178 C T KIFC1 Missense_Mutation p.R436W 0.12 deleterious(0) probably_damaging(1) TCGA-EK-A2GZ-01 6 34826295 34826295 C T UHRF1BP1 Missense_Mutation p.P721L 0.16 deleterious(0) possibly_damaging(0.703) TCGA-EK-A2GZ-01 6 35288970 35288970 G A DEF6 Missense_Mutation p.R560H 0.33 tolerated(0.09) benign(0.152) TCGA-EK-A2GZ-01 6 87964521 87964521 A G ZNF292 Missense_Mutation p.S392G 0.31 deleterious(0) possibly_damaging(0.9) TCGA-EK-A2GZ-01 7 130023300 130023300 C T CPA1 Silent p.V184V 0.32 TCGA-EK-A2GZ-01 7 27871573 27871574 AA - JAZF1 3'UTR 0.14 TCGA-EK-A2GZ-01 7 29606289 29606289 C T PRR15 Missense_Mutation p.P115L 0.19 tolerated(0.15) benign(0.023) TCGA-EK-A2GZ-01 7 77326305 77326305 C T RSBN1L Silent p.L173L 0.17 TCGA-EK-A2GZ-01 7 8272304 8272304 C T ICA1 Silent p.T33T 0.26 TCGA-EK-A2GZ-01 8 145616352 145616352 G A ADCK5 Missense_Mutation p.E188K 0.26 deleterious(0.02) possibly_damaging(0.517) TCGA-EK-A2GZ-01 8 145619868 145619868 G A CPSF1 Silent p.I1186I 0.23 TCGA-EK-A2GZ-01 8 36780037 36780037 C T KCNU1 Nonsense_Mutation p.Q876* 0.35 TCGA-EK-A2GZ-01 8 59872530 59872530 G A TOX Missense_Mutation p.P47L 0.12 tolerated(0.08) probably_damaging(0.982) TCGA-EK-A2GZ-01 8 97346493 97346493 G A PTDSS1 3'UTR 0.10 TCGA-EK-A2GZ-01 9 100849686 100849686 C G TRIM14 3'UTR 0.25 TCGA-EK-A2GZ-01 9 112899283 112899283 G A PALM2-AKAP2 Missense_Mutation p.E487K 0.40 tolerated(0.19) possibly_damaging(0.715) TCGA-EK-A2GZ-01 9 125582191 125582191 C A PDCL 3'UTR 0.23 TCGA-EK-A2GZ-01 9 137736331 137736331 G A COL5A1 3'UTR 0.36 TCGA-EK-A2GZ-01 9 138657024 138657024 G A KCNT1 Missense_Mutation p.A395T 0.11 deleterious(0.01) possibly_damaging(0.708) TCGA-EK-A2GZ-01 9 8315242 8315242 C T PTPRD 3'UTR 0.31 TCGA-EK-A2GZ-01 9 90321375 90321375 G A DAPK1 Missense_Mutation p.R1130H 0.19 deleterious(0) probably_damaging(0.938) TCGA-EK-A2GZ-01 X 2161183 2161183 C T DHRSX Missense_Mutation p.E229K 0.13 tolerated(0.53) benign(0.045) TCGA-EK-A2GZ-01 X 70389651 70389651 G A NLGN3 Missense_Mutation p.G751R 0.57 tolerated_low_confidence(0.52) benign(0.054) TCGA-EK-A2H0-01 10 12046574 12046574 C T UPF2 Missense_Mutation p.E487K 0.29 tolerated(0.22) benign(0.258) TCGA-EK-A2H0-01 10 12160859 12160859 C T DHTKD1 Silent p.L838L 0.40 TCGA-EK-A2H0-01 10 29843751 29843751 G C SVIL Missense_Mutation p.R41G 0.42 deleterious(0) probably_damaging(0.999) TCGA-EK-A2H0-01 10 37442509 37442509 G A ANKRD30A Missense_Mutation p.E517K 0.24 tolerated(0.75) possibly_damaging(0.636) TCGA-EK-A2H0-01 10 42971127 42971127 G C LINC00839 RNA 0.32 TCGA-EK-A2H0-01 10 45920431 45920431 G A ALOX5 Missense_Mutation p.E229K 0.42 deleterious(0.01) benign(0.105) TCGA-EK-A2H0-01 10 50004403 50004403 A G WDFY4 Missense_Mutation p.I1440V 0.35 tolerated(0.49) benign(0.011) TCGA-EK-A2H0-01 10 62553850 62553850 C T CDK1 3'UTR 0.22 TCGA-EK-A2H0-01 10 70883965 70883965 G C VPS26A 5'UTR 0.37 TCGA-EK-A2H0-01 10 72517980 72517980 G A ADAMTS14 Silent p.T1042T 0.40 TCGA-EK-A2H0-01 10 8006430 8006430 G A TAF3 Silent p.K319K 0.31 TCGA-EK-A2H0-01 10 92675933 92675933 C T ANKRD1 Missense_Mutation p.D216N 0.46 deleterious(0) possibly_damaging(0.866) TCGA-EK-A2H0-01 10 97951610 97951610 C T BLNK 3'UTR 0.25 TCGA-EK-A2H0-01 10 98741904 98741904 G A C10orf12 Missense_Mutation p.D253N 0.27 tolerated(0.09) benign(0.258) TCGA-EK-A2H0-01 11 118425278 118425278 C T IFT46 Missense_Mutation p.D178N 0.29 deleterious(0.04) possibly_damaging(0.742) TCGA-EK-A2H0-01 11 118900036 118900036 G A SLC37A4 Missense_Mutation p.S15L 0.42 tolerated(0.59) benign(0.001) TCGA-EK-A2H0-01 11 119033198 119033198 C T ABCG4 3'UTR 0.33 TCGA-EK-A2H0-01 11 3128499 3128499 C G OSBPL5 Silent p.L351L 0.37 TCGA-EK-A2H0-01 11 5080666 5080666 G A OR52E2 Silent p.F64F 0.74 TCGA-EK-A2H0-01 11 62554674 62554674 C G TAF6L Missense_Mutation p.S592W 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-EK-A2H0-01 11 63706538 63706538 G A NAA40 5'UTR 0.24 TCGA-EK-A2H0-01 11 63706541 63706541 G A NAA40 5'UTR 0.24 TCGA-EK-A2H0-01 11 63721969 63721969 C G NAA40 3'UTR 0.58 TCGA-EK-A2H0-01 11 66244063 66244063 C G PELI3 3'UTR 0.32 TCGA-EK-A2H0-01 11 66613724 66613724 G C RCE1 3'UTR 0.37 TCGA-EK-A2H0-01 11 66742774 66742774 C G C11orf86 5'UTR 0.28 TCGA-EK-A2H0-01 11 67017739 67017739 C G KDM2A Missense_Mutation p.S746R 0.26 tolerated(0.17) benign(0.03) TCGA-EK-A2H0-01 11 67225898 67225898 G A CABP4 Silent p.P236P 0.30 TCGA-EK-A2H0-01 11 67287316 67287316 G A CABP2 Silent p.D195D 0.41 TCGA-EK-A2H0-01 11 67378577 67378577 C G NDUFV1 Nonsense_Mutation p.S271* 0.31 TCGA-EK-A2H0-01 11 71944182 71944182 C G INPPL1 Missense_Mutation p.A672G 0.38 deleterious(0) benign(0.421) TCGA-EK-A2H0-01 11 72538321 72538321 C A ATG16L2 Silent p.I485I 0.43 TCGA-EK-A2H0-01 11 89532887 89532887 G A TRIM49 Nonsense_Mutation p.R286* 0.25 TCGA-EK-A2H0-01 12 105561239 105561239 C T KIAA1033 3'UTR 0.45 TCGA-EK-A2H0-01 12 107391306 107391306 C T CRY1 Missense_Mutation p.M484I 0.33 tolerated(0.05) possibly_damaging(0.594) TCGA-EK-A2H0-01 12 113403719 113403719 C T OAS3 Silent p.V858V 0.34 TCGA-EK-A2H0-01 12 117914376 117914376 C T KSR2 Silent p.Q825Q 0.33 TCGA-EK-A2H0-01 12 121454196 121454196 C G C12orf43 Missense_Mutation p.E28Q 0.40 deleterious(0.01) possibly_damaging(0.584) TCGA-EK-A2H0-01 12 123078898 123078898 G C KNTC1 Missense_Mutation p.D1441H 0.33 tolerated(0.08) probably_damaging(0.936) TCGA-EK-A2H0-01 12 2909265 2909265 G C FKBP4 Missense_Mutation p.E275Q 0.18 tolerated(0.08) possibly_damaging(0.746) TCGA-EK-A2H0-01 12 49229908 49229908 C T DDX23 Missense_Mutation p.D460N 0.43 tolerated(0.21) benign(0.221) TCGA-EK-A2H0-01 12 50860803 50860803 C T LARP4 Missense_Mutation p.S482L 0.39 deleterious(0) possibly_damaging(0.78) TCGA-EK-A2H0-01 12 52995000 52995000 G A KRT72 Silent p.F79F 0.52 TCGA-EK-A2H0-01 12 539854 539854 C T CCDC77 Nonsense_Mutation p.Q179* 0.26 TCGA-EK-A2H0-01 12 56215782 56215782 C T DNAJC14 Silent p.V696V 0.29 TCGA-EK-A2H0-01 12 6881893 6881893 C G LAG3 5'UTR 0.41 TCGA-EK-A2H0-01 12 94543416 94543416 C G PLXNC1 Silent p.L223L 0.10 TCGA-EK-A2H0-01 12 95434349 95434349 C T NR2C1 Missense_Mutation p.E386K 0.32 tolerated(0.12) benign(0.395) TCGA-EK-A2H0-01 13 102047655 102047655 G A NALCN Missense_Mutation p.T57M 0.22 deleterious(0) probably_damaging(1) TCGA-EK-A2H0-01 13 113633962 113633962 C T MCF2L Intron 0.29 TCGA-EK-A2H0-01 13 113976995 113976996 - GCC LAMP1 3'UTR 0.27 TCGA-EK-A2H0-01 13 113976999 113976999 C G LAMP1 3'UTR 0.25 TCGA-EK-A2H0-01 13 28155748 28155748 C T LNX2 Nonsense_Mutation p.W31* 0.83 TCGA-EK-A2H0-01 13 39264593 39264593 G A FREM2 Missense_Mutation p.D1038N 0.52 tolerated(0.13) benign(0.145) TCGA-EK-A2H0-01 13 46923456 46923456 G C KIAA0226L Missense_Mutation p.I532M 0.47 tolerated(0.12) possibly_damaging(0.868) TCGA-EK-A2H0-01 14 101012989 101012989 C T BEGAIN Missense_Mutation p.E9K 0.27 deleterious(0.03) possibly_damaging(0.631) TCGA-EK-A2H0-01 14 103410556 103410556 C T CDC42BPB Silent p.T1360T 0.28 TCGA-EK-A2H0-01 14 105408926 105408926 C A AHNAK2 Missense_Mutation p.D4288Y 0.30 probably_damaging(0.999) TCGA-EK-A2H0-01 14 20836557 20836557 C G TEP1 3'UTR 0.24 TCGA-EK-A2H0-01 14 20864069 20864069 G C TEP1 Missense_Mutation p.L567V 0.33 deleterious(0.01) probably_damaging(0.987) TCGA-EK-A2H0-01 14 23992625 23992625 C A ZFHX2 Nonsense_Mutation p.E2176* 0.46 TCGA-EK-A2H0-01 14 23993957 23993957 C G ZFHX2 Missense_Mutation p.E1732Q 0.34 benign(0.03) TCGA-EK-A2H0-01 14 38725272 38725272 C T CLEC14A 5'UTR 0.27 TCGA-EK-A2H0-01 14 51221467 51221467 C G NIN Missense_Mutation p.E1553Q 0.27 deleterious(0.03) benign(0.039) TCGA-EK-A2H0-01 14 59113920 59113920 G A DACT1 3'Flank 0.29 TCGA-EK-A2H0-01 14 71199564 71199564 G C MAP3K9 Missense_Mutation p.S855C 0.34 deleterious(0) probably_damaging(0.999) TCGA-EK-A2H0-01 14 92472576 92472576 C T TRIP11 Missense_Mutation p.E582K 0.29 deleterious(0) possibly_damaging(0.487) TCGA-EK-A2H0-01 14 92960394 92960394 C G SLC24A4 3'UTR 0.36 TCGA-EK-A2H0-01 15 41476476 41476476 C T EXD1 Missense_Mutation p.E400K 0.25 tolerated_low_confidence(0.16) benign(0.025) TCGA-EK-A2H0-01 15 41476477 41476477 C T EXD1 Silent p.E399E 0.25 TCGA-EK-A2H0-01 15 43714055 43714055 C G TP53BP1 Silent p.L1366L 0.36 TCGA-EK-A2H0-01 15 48433230 48433230 G A MYEF2 3'UTR 0.40 TCGA-EK-A2H0-01 15 58284946 58284946 G C ALDH1A2 Missense_Mutation p.S252C 0.30 deleterious(0.03) possibly_damaging(0.616) TCGA-EK-A2H0-01 15 65157665 65157665 G C PLEKHO2 Missense_Mutation p.E351Q 0.42 tolerated(0.08) benign(0.393) TCGA-EK-A2H0-01 15 66262906 66262906 C G MEGF11 Missense_Mutation p.G295A 0.27 deleterious(0) probably_damaging(0.988) TCGA-EK-A2H0-01 15 76866515 76866515 C G SCAPER Missense_Mutation p.R941T 0.33 deleterious(0) probably_damaging(0.994) TCGA-EK-A2H0-01 16 1308496 1308496 G A TPSD1 3'Flank 0.42 TCGA-EK-A2H0-01 16 2226687 2226687 G A TRAF7 3'UTR 0.35 TCGA-EK-A2H0-01 16 2607870 2607870 C T PDPK1 Missense_Mutation p.S64F 0.26 deleterious(0.01) benign(0.109) TCGA-EK-A2H0-01 16 30198163 30198163 G C CORO1A Silent p.L116L 0.25 TCGA-EK-A2H0-01 16 30409622 30409622 C T ZNF48 Missense_Mutation p.R351C 0.24 deleterious(0) probably_damaging(0.997) TCGA-EK-A2H0-01 16 49671713 49671713 C T ZNF423 Missense_Mutation p.M450I 0.35 tolerated(0.16) benign(0.004) TCGA-EK-A2H0-01 16 69833074 69833074 C T WWP2 Intron 0.36 TCGA-EK-A2H0-01 16 71408712 71408712 C T CALB2 Missense_Mutation p.S79L 0.16 tolerated(0.11) benign(0.219) TCGA-EK-A2H0-01 17 2570453 2570453 C T PAFAH1B1 Silent p.F120F 0.68 TCGA-EK-A2H0-01 17 25932744 25932744 G C KSR1 Missense_Mutation p.K518N 0.40 deleterious(0) probably_damaging(0.998) TCGA-EK-A2H0-01 17 33288933 33288933 G A ZNF830 Silent p.A116A 0.35 TCGA-EK-A2H0-01 17 33767735 33767735 G A SLFN13 Missense_Mutation p.S858L 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-EK-A2H0-01 17 36829966 36829966 G T C17orf96 Missense_Mutation p.F261L 0.29 deleterious_low_confidence(0) benign(0.294) TCGA-EK-A2H0-01 17 37368565 37368565 C G STAC2 Missense_Mutation p.D406H 0.33 deleterious(0) benign(0.39) TCGA-EK-A2H0-01 17 38249337 38249337 C T THRA Missense_Mutation p.S392L 0.22 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-EK-A2H0-01 17 43226812 43226812 G C HEXIM1 Silent p.L85L 0.38 TCGA-EK-A2H0-01 17 43226833 43226833 G C HEXIM1 Missense_Mutation p.Q92H 0.40 deleterious_low_confidence(0.05) benign(0.004) TCGA-EK-A2H0-01 17 47044545 47044545 G A GIP Missense_Mutation p.A17V 0.38 tolerated(0.32) probably_damaging(0.991) TCGA-EK-A2H0-01 17 48742570 48742570 C G ABCC3 Silent p.L465L 0.35 TCGA-EK-A2H0-01 17 57057649 57057649 C G PPM1E Missense_Mutation p.Q509E 0.39 tolerated_low_confidence(0.06) benign(0.015) TCGA-EK-A2H0-01 17 57762494 57762494 C T CLTC Silent p.L1504L 0.31 TCGA-EK-A2H0-01 17 66528627 66528627 C G PRKAR1A 3'UTR 0.44 TCGA-EK-A2H0-01 17 72257319 72257319 G A TTYH2 3'UTR 0.33 TCGA-EK-A2H0-01 17 8044320 8044320 C G PER1 3'UTR 0.50 TCGA-EK-A2H0-01 18 11853752 11853752 C G CHMP1B 3'UTR 0.32 TCGA-EK-A2H0-01 19 10107297 10107297 C G COL5A3 Missense_Mutation p.M444I 0.33 unknown(0) TCGA-EK-A2H0-01 19 11727567 11727567 C T ZNF627 Silent p.F83F 0.47 TCGA-EK-A2H0-01 19 14676998 14676998 C G NDUFB7 Missense_Mutation p.E121Q 0.40 tolerated(0.22) benign(0.001) TCGA-EK-A2H0-01 19 2851618 2851618 G C ZNF555 Missense_Mutation p.D95H 0.43 tolerated(0.06) possibly_damaging(0.62) TCGA-EK-A2H0-01 19 30936388 30936388 T C ZNF536 Missense_Mutation p.F640S 0.32 deleterious(0) probably_damaging(0.998) TCGA-EK-A2H0-01 19 36004044 36004044 C G DMKN Missense_Mutation p.E112Q 0.47 deleterious(0) probably_damaging(0.992) TCGA-EK-A2H0-01 19 4216286 4216286 G A ANKRD24 Missense_Mutation p.E426K 0.42 deleterious(0) possibly_damaging(0.651) TCGA-EK-A2H0-01 19 45912270 45912270 G C CD3EAP Missense_Mutation p.E348D 0.38 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-EK-A2H0-01 19 48325170 48325170 C T CRX 5'UTR 0.32 TCGA-EK-A2H0-01 19 52794063 52794063 C G ZNF766 Nonsense_Mutation p.S340* 0.55 TCGA-EK-A2H0-01 19 54868125 54868125 G C LAIR1 Silent p.L186L 0.33 TCGA-EK-A2H0-01 19 5561091 5561091 G C TINCR RNA 0.32 TCGA-EK-A2H0-01 19 57911010 57911010 G C ZNF548 Missense_Mutation p.R464T 0.36 deleterious(0.04) benign(0.085) TCGA-EK-A2H0-01 19 6586411 6586411 G A CD70 Nonsense_Mutation p.Q68* 0.44 TCGA-EK-A2H0-01 19 8657677 8657677 C T ADAMTS10 Silent p.T519T 0.47 TCGA-EK-A2H0-01 1 115231303 115231303 C T AMPD1 Missense_Mutation p.E65K 0.40 deleterious(0) possibly_damaging(0.861) TCGA-EK-A2H0-01 1 12918971 12918971 A G PRAMEF2 Missense_Mutation p.Y36C 0.32 deleterious(0) probably_damaging(0.911) TCGA-EK-A2H0-01 1 14105740 14105740 C T PRDM2 Missense_Mutation p.P484S 0.45 probably_damaging(0.98) TCGA-EK-A2H0-01 1 154516982 154516982 C T TDRD10 Silent p.H262H 0.19 TCGA-EK-A2H0-01 1 155270044 155270044 C G PKLR Missense_Mutation p.S43T 0.40 tolerated_low_confidence(0.19) benign(0.278) TCGA-EK-A2H0-01 1 156290801 156290801 G T CCT3 Silent p.I146I 0.22 TCGA-EK-A2H0-01 1 160341317 160341317 C G NHLH1 3'UTR 0.46 TCGA-EK-A2H0-01 1 161090430 161090430 G C NIT1 Missense_Mutation p.E287Q 0.32 tolerated(0.06) benign(0.006) TCGA-EK-A2H0-01 1 167404653 167404653 G T CD247 Missense_Mutation p.Q107K 0.35 tolerated(0.16) benign(0.118) TCGA-EK-A2H0-01 1 1683721 1683721 G A NADK 3'UTR 0.32 TCGA-EK-A2H0-01 1 179077403 179077403 G C ABL2 Nonsense_Mutation p.S1000* 0.20 TCGA-EK-A2H0-01 1 180053269 180053269 G C CEP350 Missense_Mutation p.E2081Q 0.45 probably_damaging(0.999) TCGA-EK-A2H0-01 1 181059744 181059744 G C IER5 3'UTR 0.53 TCGA-EK-A2H0-01 1 181770143 181770143 G A CACNA1E 3'Flank 0.26 TCGA-EK-A2H0-01 1 183914630 183914630 G A COLGALT2 Missense_Mutation p.S402F 0.38 deleterious(0.02) possibly_damaging(0.88) TCGA-EK-A2H0-01 1 197073358 197073358 A G ASPM Missense_Mutation p.F1675L 0.32 tolerated(0.05) probably_damaging(0.996) TCGA-EK-A2H0-01 1 20675597 20675597 G C VWA5B1 Intron 0.52 TCGA-EK-A2H0-01 1 206907327 206907327 C T MAPKAPK2 3'UTR 0.32 TCGA-EK-A2H0-01 1 206907452 206907452 C A MAPKAPK2 3'UTR 0.38 TCGA-EK-A2H0-01 1 212985578 212985578 C G TATDN3 Missense_Mutation p.L204V 0.30 tolerated_low_confidence(0.38) benign(0.037) TCGA-EK-A2H0-01 1 221053337 221053337 C T HLX Silent p.I46I 0.27 TCGA-EK-A2H0-01 1 225268252 225268252 G A DNAH14 Missense_Mutation p.E58K 0.27 tolerated(0.28) possibly_damaging(0.713) TCGA-EK-A2H0-01 1 228285143 228285143 G A ARF1 Silent p.Q83Q 0.28 TCGA-EK-A2H0-01 1 232538176 232538176 C G SIPA1L2 Missense_Mutation p.E1662Q 0.42 deleterious(0) possibly_damaging(0.873) TCGA-EK-A2H0-01 1 23667363 23667363 C G HNRNPR Missense_Mutation p.D47H 0.54 deleterious(0.03) probably_damaging(0.994) TCGA-EK-A2H0-01 1 236995308 236995309 - CATTT MTR Frame_Shift_Ins p.G375Sfs*50 0.50 TCGA-EK-A2H0-01 1 240497525 240497525 G T FMN2 Missense_Mutation p.L1587F 0.19 possibly_damaging(0.759) TCGA-EK-A2H0-01 1 27633122 27633122 C - WDTC1 3'UTR 0.58 TCGA-EK-A2H0-01 1 32673549 32673549 C T IQCC Missense_Mutation p.H503Y 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.629) TCGA-EK-A2H0-01 1 32692070 32692070 C T EIF3I Missense_Mutation p.P156L 0.08 tolerated(0.64) benign(0.004) TCGA-EK-A2H0-01 1 33546851 33546851 C T ADC 5'UTR 0.53 TCGA-EK-A2H0-01 1 35442283 35442283 C T ZMYM6NB 3'Flank 0.33 TCGA-EK-A2H0-01 1 42048469 42048469 G C HIVEP3 Nonsense_Mutation p.S667* 0.41 TCGA-EK-A2H0-01 1 43812572 43812572 C G MPL Silent p.L425L 0.26 TCGA-EK-A2H0-01 1 45810904 45810904 C T TESK2 Missense_Mutation p.D442N 0.44 tolerated(0.13) benign(0.016) TCGA-EK-A2H0-01 1 62959997 62959997 C G DOCK7 Missense_Mutation p.L1691F 0.44 deleterious(0) possibly_damaging(0.894) TCGA-EK-A2H0-01 1 65332599 65332599 C T JAK1 Missense_Mutation p.E314K 0.27 deleterious(0.01) benign(0.436) TCGA-EK-A2H0-01 1 90460776 90460776 C G ZNF326 5'UTR 0.20 TCGA-EK-A2H0-01 20 24646427 24646427 G A SYNDIG1 3'UTR 0.33 TCGA-EK-A2H0-01 20 33591061 33591061 C T TRPC4AP Nonsense_Mutation p.W761* 0.52 TCGA-EK-A2H0-01 20 34638451 34638451 C T LINC00657 RNA 0.51 TCGA-EK-A2H0-01 20 40126078 40126078 C T CHD6 Silent p.Q346Q 0.36 TCGA-EK-A2H0-01 20 49508892 49508892 C A ADNP Nonsense_Mutation p.E787* 0.71 TCGA-EK-A2H0-01 20 49509062 49509062 C A ADNP Missense_Mutation p.R730L 0.75 deleterious(0.04) possibly_damaging(0.891) TCGA-EK-A2H0-01 20 55111363 55111363 G C FAM209B Missense_Mutation p.E129Q 0.62 deleterious(0.01) benign(0.001) TCGA-EK-A2H0-01 21 30699110 30699110 C G BACH1 Missense_Mutation p.S322C 0.31 deleterious(0.01) possibly_damaging(0.671) TCGA-EK-A2H0-01 21 45802678 45802689 GGCCATCTTGCA - TRPM2 In_Frame_Del p.I433_A436del 0.22 TCGA-EK-A2H0-01 21 47423450 47423450 C T COL6A1 Silent p.D870D 0.24 TCGA-EK-A2H0-01 22 17525858 17525858 G A CECR7 RNA 0.37 TCGA-EK-A2H0-01 22 23213912 23213912 G A IGLV4-3 Silent p.L23L 0.22 TCGA-EK-A2H0-01 22 24563133 24563133 G A CABIN1 Missense_Mutation p.R1845H 0.26 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EK-A2H0-01 22 31592952 31592952 G C RNF185 Missense_Mutation p.Q113H 0.35 tolerated(0.05) benign(0.012) TCGA-EK-A2H0-01 22 50942059 50942059 G A LMF2 Nonsense_Mutation p.Q629* 0.27 TCGA-EK-A2H0-01 2 152132175 152132175 C G NMI Missense_Mutation p.E153Q 0.50 tolerated(0.39) benign(0.081) TCGA-EK-A2H0-01 2 168811454 168811454 G C STK39 3'UTR 0.40 TCGA-EK-A2H0-01 2 170062614 170062614 G A LRP2 Missense_Mutation p.S2492F 0.24 probably_damaging(0.993) TCGA-EK-A2H0-01 2 17889941 17889941 C G SMC6 Missense_Mutation p.D604H 0.33 deleterious(0) probably_damaging(0.999) TCGA-EK-A2H0-01 2 180306848 180306848 C T ZNF385B 3'UTR 0.35 TCGA-EK-A2H0-01 2 1915828 1915828 C T MYT1L Missense_Mutation p.R556H 0.33 deleterious(0) probably_damaging(0.988) TCGA-EK-A2H0-01 2 197870440 197870440 C T ANKRD44 Silent p.P750P 0.18 TCGA-EK-A2H0-01 2 201687564 201687564 G C BZW1 3'Flank 0.20 TCGA-EK-A2H0-01 2 220094305 220094305 C T ATG9A 5'Flank 0.46 TCGA-EK-A2H0-01 2 225811729 225811729 C T DOCK10 Intron 0.62 TCGA-EK-A2H0-01 2 27804570 27804570 C T C2orf16 Missense_Mutation p.H1711Y 0.35 tolerated(0.4) possibly_damaging(0.503) TCGA-EK-A2H0-01 2 27861074 27861074 C T GPN1 Intron 0.39 TCGA-EK-A2H0-01 2 39945008 39945008 C T TMEM178A 3'UTR 0.15 TCGA-EK-A2H0-01 2 58468453 58468453 C G FANCL 5'UTR 0.27 TCGA-EK-A2H0-01 2 70191430 70191430 C T ASPRV1 5'Flank 0.59 TCGA-EK-A2H0-01 2 70315274 70315274 G A PCBP1 Silent p.V133V 0.34 TCGA-EK-A2H0-01 3 113376217 113376217 G C KIAA2018 Missense_Mutation p.L1438V 0.33 probably_damaging(0.996) TCGA-EK-A2H0-01 3 159710811 159710811 C G IL12A Missense_Mutation p.L93V 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-EK-A2H0-01 3 164757752 164757752 C T SI Missense_Mutation p.E723K 0.22 tolerated(0.31) benign(0.006) TCGA-EK-A2H0-01 3 172835168 172835168 C G SPATA16 Missense_Mutation p.K118N 0.27 deleterious(0.04) possibly_damaging(0.607) TCGA-EK-A2H0-01 3 39136444 39136444 G C WDR48 3'UTR 0.50 TCGA-EK-A2H0-01 3 45999964 45999964 G T FYCO1 Missense_Mutation p.S1245R 0.38 deleterious(0.04) possibly_damaging(0.646) TCGA-EK-A2H0-01 3 58095770 58095770 G A FLNB Missense_Mutation p.R786Q 0.71 tolerated(0.15) benign(0.297) TCGA-EK-A2H0-01 3 73111492 73111492 C T EBLN2 Missense_Mutation p.P87L 0.56 tolerated_low_confidence(0.16) possibly_damaging(0.908) TCGA-EK-A2H0-01 3 9791867 9791867 G C OGG1 5'UTR 0.21 TCGA-EK-A2H0-01 4 106158945 106158945 C T TET2 Intron 0.38 TCGA-EK-A2H0-01 4 16504643 16504643 C T LDB2 Intron 0.27 TCGA-EK-A2H0-01 4 175749993 175749993 T C GLRA3 5'UTR 0.57 TCGA-EK-A2H0-01 4 17782849 17782849 C A FAM184B Missense_Mutation p.G25V 0.32 tolerated(0.14) possibly_damaging(0.597) TCGA-EK-A2H0-01 4 187525001 187525001 G C FAT1 Nonsense_Mutation p.S3560* 0.64 TCGA-EK-A2H0-01 4 25806242 25806242 C T SEL1L3 Missense_Mutation p.C566Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-EK-A2H0-01 4 39558162 39558162 G C SMIM14 Missense_Mutation p.I51M 0.36 tolerated(0.23) benign(0.375) TCGA-EK-A2H0-01 4 48490485 48490485 C G SLC10A4 Missense_Mutation p.F281L 0.39 tolerated(0.17) possibly_damaging(0.869) TCGA-EK-A2H0-01 5 139908053 139908053 C T ANKHD1 Missense_Mutation p.S1841F 0.39 possibly_damaging(0.85) TCGA-EK-A2H0-01 5 140710615 140710615 G C PCDHGA1 Missense_Mutation p.E122Q 0.36 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-EK-A2H0-01 5 143543784 143543785 - T YIPF5 Frame_Shift_Ins p.T107Nfs*18 0.26 TCGA-EK-A2H0-01 5 149677811 149677811 G C ARSI Missense_Mutation p.Q226E 0.39 tolerated(0.99) benign(0.002) TCGA-EK-A2H0-01 5 176797663 176797663 C G RGS14 Missense_Mutation p.F375L 0.31 deleterious(0.04) benign(0.044) TCGA-EK-A2H0-01 5 179528073 179528073 T A RASGEF1C 3'UTR 0.41 TCGA-EK-A2H0-01 5 33997304 33997304 G T AMACR Intron 0.35 TCGA-EK-A2H0-01 5 60982894 60982894 C G C5orf64 Missense_Mutation p.F74L 0.31 tolerated_low_confidence(0.35) benign(0.002) TCGA-EK-A2H0-01 5 72470088 72470088 C T TMEM174 3'UTR 0.25 TCGA-EK-A2H0-01 5 82818048 82818048 C G VCAN Missense_Mutation p.S1308C 0.25 deleterious(0) probably_damaging(0.997) TCGA-EK-A2H0-01 5 893093 893093 C T TRIP13 5'UTR 0.22 TCGA-EK-A2H0-01 6 109837659 109837659 C G AK9 Missense_Mutation p.D1274H 0.30 deleterious(0) possibly_damaging(0.642) TCGA-EK-A2H0-01 6 138657746 138657747 GT - KIAA1244 3'UTR 0.74 TCGA-EK-A2H0-01 6 143092438 143092438 C A HIVEP2 Silent p.L1146L 0.69 TCGA-EK-A2H0-01 6 150004568 150004568 G C LATS1 Missense_Mutation p.Q553E 0.72 tolerated(0.09) possibly_damaging(0.459) TCGA-EK-A2H0-01 6 150005605 150005605 G C LATS1 Nonsense_Mutation p.S207* 0.77 TCGA-EK-A2H0-01 6 26428906 26428906 C T BTN2A3P RNA 0.34 TCGA-EK-A2H0-01 6 31725965 31725965 G C MSH5 Silent p.L346L 0.80 TCGA-EK-A2H0-01 6 53010486 53010486 G A GCM1 5'UTR 0.43 TCGA-EK-A2H0-01 6 70851786 70851786 G C COL19A1 Missense_Mutation p.G495A 0.46 deleterious(0) probably_damaging(0.999) TCGA-EK-A2H0-01 6 7414492 7414492 C G RIOK1 Missense_Mutation p.Q489E 0.30 tolerated(0.81) benign(0.001) TCGA-EK-A2H0-01 6 85473690 85473690 G A TBX18 Silent p.D70D 0.30 TCGA-EK-A2H0-01 7 104844135 104844135 C G SRPK2 Missense_Mutation p.E57Q 0.47 deleterious(0.04) unknown(0) TCGA-EK-A2H0-01 7 117067509 117067509 C T ASZ1 Silent p.A2A 0.48 TCGA-EK-A2H0-01 7 127255468 127255468 G C PAX4 Nonsense_Mutation p.S36* 0.56 TCGA-EK-A2H0-01 7 128486140 128486140 C T FLNC Missense_Mutation p.S1296L 0.48 deleterious(0) probably_damaging(0.914) TCGA-EK-A2H0-01 7 130356546 130356546 G C TSGA13 Missense_Mutation p.Q205E 0.58 tolerated(0.09) benign(0.092) TCGA-EK-A2H0-01 7 1542628 1542628 C T INTS1 Silent p.L86L 0.40 TCGA-EK-A2H0-01 7 22769345 22769345 C G IL6 Intron 0.34 TCGA-EK-A2H0-01 7 27169114 27169114 C T HOXA4 Silent p.E231E 0.19 TCGA-EK-A2H0-01 7 27169123 27169123 C G HOXA4 Missense_Mutation p.L228F 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-EK-A2H0-01 7 33042416 33042416 G C FKBP9 Missense_Mutation p.D501H 0.43 deleterious(0) probably_damaging(0.999) TCGA-EK-A2H0-01 7 44009353 44009353 G A POLR2J4 Intron 0.38 TCGA-EK-A2H0-01 7 64466983 64466983 G A ERV3-1 5'UTR 0.41 TCGA-EK-A2H0-01 7 99950626 99950626 C G PILRB 5'UTR 0.52 TCGA-EK-A2H0-01 8 103845404 103845404 C T AZIN1 Missense_Mutation p.E262K 0.26 tolerated(0.32) benign(0.01) TCGA-EK-A2H0-01 8 104337017 104337017 G C FZD6 Missense_Mutation p.R228T 0.48 deleterious(0) probably_damaging(1) TCGA-EK-A2H0-01 8 110450559 110450559 G A PKHD1L1 Missense_Mutation p.E1212K 0.19 tolerated(0.27) benign(0.026) TCGA-EK-A2H0-01 8 12950310 12950310 T C DLC1 Missense_Mutation p.Q1184R 0.67 deleterious(0.04) possibly_damaging(0.841) TCGA-EK-A2H0-01 8 142367933 142367933 C T GPR20 Missense_Mutation p.E31K 0.23 tolerated_low_confidence(0.11) benign(0.058) TCGA-EK-A2H0-01 8 143822530 143822530 G A SLURP1 3'UTR 0.22 TCGA-EK-A2H0-01 8 144734565 144734565 C G ZNF623 3'UTR 0.45 TCGA-EK-A2H0-01 8 144734639 144734639 C G ZNF623 3'UTR 0.53 TCGA-EK-A2H0-01 8 145002027 145002027 G C PLEC Missense_Mutation p.L1269V 0.27 unknown(0) TCGA-EK-A2H0-01 8 21550683 21550683 A T GFRA2 3'UTR 0.50 TCGA-EK-A2H0-01 8 21837640 21837640 T C XPO7 Missense_Mutation p.F295L 0.66 tolerated(0.05) possibly_damaging(0.728) TCGA-EK-A2H0-01 8 30209526 30209526 G A TUBBP1 RNA 0.57 TCGA-EK-A2H0-01 8 57213979 57213979 C T SDR16C5 3'UTR 0.30 TCGA-EK-A2H0-01 9 101806867 101806867 G A COL15A1 Silent p.P864P 0.35 TCGA-EK-A2H0-01 9 107546446 107546446 G A ABCA1 3'UTR 0.23 TCGA-EK-A2H0-01 9 113245917 113245917 C G SVEP1 Missense_Mutation p.E663Q 0.41 possibly_damaging(0.904) TCGA-EK-A2H0-01 9 124988717 124988717 C T LHX6 Silent p.L133L 0.58 TCGA-EK-A2H0-01 9 12693982 12693982 C G TYRP1 5'UTR 0.35 TCGA-EK-A2H0-01 9 12694281 12694281 C T TYRP1 Silent p.F95F 0.71 TCGA-EK-A2H0-01 9 132569559 132569559 C T TOR1B Silent p.I186I 0.24 TCGA-EK-A2H0-01 9 132569634 132569634 C T TOR1B Silent p.I211I 0.24 TCGA-EK-A2H0-01 9 140174416 140174416 G C TOR4A 3'UTR 0.27 TCGA-EK-A2H0-01 9 15486008 15486008 C T PSIP1 Missense_Mutation p.R151K 0.24 tolerated(0.39) possibly_damaging(0.829) TCGA-EK-A2H0-01 9 19786763 19786763 C T SLC24A2 Silent p.L34L 0.41 TCGA-EK-A2H0-01 9 35612927 35612927 G C CD72 Nonsense_Mutation p.S251* 0.37 TCGA-EK-A2H0-01 9 43630657 43630657 C T SPATA31A6 Silent p.S15S 0.04 TCGA-EK-A2H0-01 9 7103735 7103735 C T KDM4C Silent p.I825I 0.28 TCGA-EK-A2H0-01 9 74667181 74667181 C G C9orf57 3'UTR 0.43 TCGA-EK-A2H0-01 9 86617752 86617752 G A RMI1 Silent p.E617E 0.24 TCGA-EK-A2H0-01 9 95078028 95078028 C G NOL8 Missense_Mutation p.K293N 0.51 tolerated(1) benign(0.001) TCGA-EK-A2H0-01 9 98669408 98669408 G T ERCC6L2 Nonsense_Mutation p.E226* 0.41 TCGA-EK-A2H0-01 X 100646524 100646524 G A RPL36A-HNRNPH2 Silent p.K38K 0.32 TCGA-EK-A2H0-01 X 109697207 109697207 C T RGAG1 Missense_Mutation p.S1121L 0.21 deleterious_low_confidence(0) benign(0.031) TCGA-EK-A2H0-01 X 110491214 110491214 C T CAPN6 Silent p.L497L 0.17 TCGA-EK-A2H0-01 X 122319787 122319787 G A GRIA3 Silent p.L71L 0.33 TCGA-EK-A2H0-01 X 125685980 125685980 A T DCAF12L1 Missense_Mutation p.S204R 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-EK-A2H0-01 X 149013299 149013299 G A MAGEA8 Missense_Mutation p.E85K 0.28 tolerated(0.06) probably_damaging(0.99) TCGA-EK-A2H0-01 X 150156427 150156427 G A HMGB3 3'UTR 0.48 TCGA-EK-A2H0-01 X 153046764 153046764 C T SRPK3 Silent p.D51D 0.36 TCGA-EK-A2H0-01 X 153717091 153717091 G C SLC10A3 Silent p.G63G 0.23 TCGA-EK-A2H0-01 X 17752146 17752146 T A NHS 3'UTR 0.58 TCGA-EK-A2H0-01 X 51151294 51151294 G A CXorf67 Missense_Mutation p.E476K 0.50 deleterious(0.01) probably_damaging(0.981) TCGA-EK-A2H0-01 X 70342457 70342457 G C MED12 Missense_Mutation p.G450R 0.11 probably_damaging(1) TCGA-EK-A2H0-01 X 73423302 73423302 C T RP3-368A4.5 RNA 0.23 TCGA-EK-A2H0-01 X 92964579 92964579 G A FAM133A Missense_Mutation p.G54D 0.57 deleterious_low_confidence(0) probably_damaging(1) TCGA-EK-A2H1-01 10 1082762 1082762 C T IDI1 3'Flank 0.24 TCGA-EK-A2H1-01 10 22619064 22619064 C T BMI1 3'UTR 0.17 TCGA-EK-A2H1-01 10 50835688 50835688 G A CHAT Missense_Mutation p.R323H 0.03 deleterious(0.04) probably_damaging(0.976) TCGA-EK-A2H1-01 10 55566447 55566447 C G PCDH15 Missense_Mutation p.K1646N 0.08 tolerated_low_confidence(0.46) benign(0.015) TCGA-EK-A2H1-01 11 117374667 117374667 G A DSCAML1 Missense_Mutation p.S811L 0.16 deleterious(0.03) probably_damaging(0.961) TCGA-EK-A2H1-01 11 122795698 122795698 C T C11orf63 Nonsense_Mutation p.Q320* 0.12 TCGA-EK-A2H1-01 11 31452329 31452329 C T DNAJC24 3'UTR 0.14 TCGA-EK-A2H1-01 12 104382100 104382100 C T TDG 3'UTR 0.22 TCGA-EK-A2H1-01 12 309905 309905 G A SLC6A12 Missense_Mutation p.S208F 0.06 deleterious(0.01) benign(0.438) TCGA-EK-A2H1-01 12 54383485 54383485 T C HOXC10 3'UTR 0.21 TCGA-EK-A2H1-01 12 62918307 62918307 G A MON2 Missense_Mutation p.E333K 0.22 deleterious(0) probably_damaging(0.999) TCGA-EK-A2H1-01 13 75923387 75923387 G A TBC1D4 Silent p.L443L 0.14 TCGA-EK-A2H1-01 13 95363252 95363252 G C SOX21 3'UTR 0.24 TCGA-EK-A2H1-01 15 25481267 25481267 G A SNORD115-36 RNA 0.12 TCGA-EK-A2H1-01 15 28358750 28358750 G C HERC2 Missense_Mutation p.S4663C 0.20 probably_damaging(0.964) TCGA-EK-A2H1-01 17 20108175 20108175 C T SPECC1 Silent p.G271G 0.27 TCGA-EK-A2H1-01 17 5456859 5456859 A T NLRP1 Missense_Mutation p.V792D 0.18 deleterious(0) possibly_damaging(0.541) TCGA-EK-A2H1-01 17 74909778 74909778 G A MGAT5B Intron 0.19 TCGA-EK-A2H1-01 19 12090758 12090758 C T ZNF763 3'UTR 0.19 TCGA-EK-A2H1-01 19 36246265 36246265 C G HSPB6 3'UTR 0.26 TCGA-EK-A2H1-01 19 48202003 48202003 C G GLTSCR1 Missense_Mutation p.Q1121E 0.23 probably_damaging(0.995) TCGA-EK-A2H1-01 19 49298713 49298713 G C BCAT2 Missense_Mutation p.I383M 0.23 tolerated(0.08) benign(0.029) TCGA-EK-A2H1-01 19 9491580 9491580 C T ZNF177 Silent p.L191L 0.15 TCGA-EK-A2H1-01 1 149936197 149936197 C A OTUD7B Nonsense_Mutation p.E228* 0.10 TCGA-EK-A2H1-01 1 228480445 228480445 G A OBSCN Missense_Mutation p.V4038M 0.17 benign(0.021) TCGA-EK-A2H1-01 1 230825830 230825830 A T COG2 Missense_Mutation p.H622L 0.22 deleterious(0.04) benign(0.41) TCGA-EK-A2H1-01 1 6531079 6531079 C T PLEKHG5 Missense_Mutation p.D534N 0.22 tolerated(0.07) benign(0.202) TCGA-EK-A2H1-01 1 74671227 74671227 C T FPGT Missense_Mutation p.S499L 0.24 deleterious(0.03) benign(0.216) TCGA-EK-A2H1-01 22 30070877 30070877 G T NF2 Nonsense_Mutation p.E465* 0.21 TCGA-EK-A2H1-01 22 30887561 30887561 G C SEC14L4 Silent p.V360V 0.36 TCGA-EK-A2H1-01 22 42609199 42609199 G C TCF20 Missense_Mutation p.L705V 0.33 benign(0.007) TCGA-EK-A2H1-01 2 1457571 1457571 G A TPO Silent p.L196L 0.24 TCGA-EK-A2H1-01 2 172217022 172217022 C G METTL8 Missense_Mutation p.D49H 0.30 deleterious(0) probably_damaging(1) TCGA-EK-A2H1-01 2 189460332 189460333 - T GULP1 3'UTR 0.12 TCGA-EK-A2H1-01 3 160134036 160134036 C T SMC4 Intron 0.14 TCGA-EK-A2H1-01 3 47041727 47041727 C G NBEAL2 Missense_Mutation p.L1380V 0.22 tolerated(0.51) benign(0.003) TCGA-EK-A2H1-01 3 57129095 57129095 C G IL17RD 3'UTR 0.30 TCGA-EK-A2H1-01 4 125590986 125590986 G A ANKRD50 Missense_Mutation p.S1149L 0.23 tolerated(0.09) benign(0.001) TCGA-EK-A2H1-01 5 137803886 137803886 C T EGR1 3'UTR 0.33 TCGA-EK-A2H1-01 5 41927154 41927154 C T FBXO4 Missense_Mutation p.H77Y 0.18 tolerated(0.05) benign(0.009) TCGA-EK-A2H1-01 5 442505 442505 C G C5orf55 3'UTR 0.26 TCGA-EK-A2H1-01 5 74324664 74324664 C T GCNT4 Nonsense_Mutation p.W400* 0.11 TCGA-EK-A2H1-01 6 160664684 160664684 C T SLC22A2 Missense_Mutation p.R400H 0.16 deleterious(0.02) possibly_damaging(0.638) TCGA-EK-A2H1-01 6 24146194 24146194 C A NRSN1 3'UTR 0.39 TCGA-EK-A2H1-01 6 96659707 96659707 G C FUT9 3'UTR 0.23 TCGA-EK-A2H1-01 8 8176083 8176083 C T SGK223 Missense_Mutation p.E1268K 0.21 probably_damaging(0.993) TCGA-EK-A2H1-01 8 88249266 88249266 C T CNBD1 Missense_Mutation p.H233Y 0.14 tolerated(0.21) benign(0.062) TCGA-EK-A2H1-01 8 9635665 9635665 G A TNKS 3'UTR 0.22 TCGA-EK-A2H1-01 9 112930801 112930801 C T PALM2-AKAP2 3'UTR 0.21 TCGA-EK-A2H1-01 9 6329686 6329686 C T TPD52L3 3'UTR 0.30 TCGA-EK-A2H1-01 X 17879290 17879290 C T RAI2 5'UTR 0.16 TCGA-EK-A2H1-01 X 48434778 48434778 C T RBM3 Missense_Mutation p.A96V 0.14 tolerated(0.08) possibly_damaging(0.739) TCGA-EK-A2H1-01 X 72667526 72667526 C G CDX4 Missense_Mutation p.A146G 0.24 tolerated(0.55) benign(0.179) TCGA-EK-A2H1-01 X 9687331 9687331 C T TBL1X 3'UTR 0.06 TCGA-EK-A2IP-01 10 15590516 15590516 C G ITGA8 Missense_Mutation p.E940Q 0.38 tolerated(0.15) possibly_damaging(0.47) TCGA-EK-A2IP-01 10 37422980 37422980 C T ANKRD30A Missense_Mutation p.H196Y 0.43 tolerated(1) benign(0.1) TCGA-EK-A2IP-01 10 97078179 97078179 G C SORBS1 Missense_Mutation p.Q1237E 0.72 deleterious(0) probably_damaging(0.991) TCGA-EK-A2IP-01 11 117059430 117059430 C T SIDT2 Missense_Mutation p.S389F 0.74 deleterious(0.01) benign(0.01) TCGA-EK-A2IP-01 11 18451320 18451320 T - LDHC Frame_Shift_Del p.V94Afs*23 0.10 TCGA-EK-A2IP-01 11 20968933 20968933 G T NELL1 Nonsense_Mutation p.E375* 0.44 TCGA-EK-A2IP-01 11 400353 400353 C A PKP3 Missense_Mutation p.Q490K 0.44 tolerated(0.06) possibly_damaging(0.48) TCGA-EK-A2IP-01 11 43436145 43436145 G A TTC17 Silent p.L690L 0.43 TCGA-EK-A2IP-01 11 62752073 62752073 C T SLC22A6 Silent p.L30L 0.53 TCGA-EK-A2IP-01 11 64111690 64111690 G A CCDC88B Silent p.E559E 0.27 TCGA-EK-A2IP-01 11 64112594 64112594 G A CCDC88B Missense_Mutation p.E861K 0.44 deleterious(0.01) possibly_damaging(0.713) TCGA-EK-A2IP-01 11 64116887 64116887 G C CCDC88B Missense_Mutation p.E901Q 0.34 deleterious(0.04) possibly_damaging(0.866) TCGA-EK-A2IP-01 11 65266394 65266394 G A MALAT1 RNA 0.33 TCGA-EK-A2IP-01 11 65266569 65266569 G C MALAT1 RNA 0.33 TCGA-EK-A2IP-01 11 65266950 65266950 G C MALAT1 RNA 0.45 TCGA-EK-A2IP-01 11 65402865 65402865 C G PCNXL3 Missense_Mutation p.D1710E 0.55 deleterious(0) probably_damaging(0.917) TCGA-EK-A2IP-01 11 65403090 65403090 C T PCNXL3 Nonsense_Mutation p.Q1759* 0.48 TCGA-EK-A2IP-01 11 66838947 66838947 C T RHOD Silent p.L169L 0.25 TCGA-EK-A2IP-01 11 67205556 67205556 T A CORO1B 3'UTR 0.10 TCGA-EK-A2IP-01 11 92573854 92573854 C T FAT3 Missense_Mutation p.P3499S 0.26 benign(0.001) TCGA-EK-A2IP-01 12 10007077 10007077 G A CLEC2B Missense_Mutation p.L82F 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2IP-01 12 104324296 104324296 G A HSP90B1 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0.05) benign(0.046) TCGA-EK-A2IP-01 12 110719571 110719571 G A ATP2A2 5'UTR 0.38 TCGA-EK-A2IP-01 12 32866193 32866193 C T DNM1L Silent p.L169L 0.47 TCGA-EK-A2IP-01 12 4410410 4410410 A G CCND2 3'UTR 0.46 TCGA-EK-A2IP-01 12 44913800 44913800 G A NELL2 Silent p.L846L 0.38 TCGA-EK-A2IP-01 12 4923220 4923220 C G KCNA6 3'UTR 0.39 TCGA-EK-A2IP-01 12 49312138 49312138 C T CCDC65 Silent p.L230L 0.29 TCGA-EK-A2IP-01 12 49725173 49725173 G C TROAP Missense_Mutation p.E759Q 0.42 deleterious(0) possibly_damaging(0.537) TCGA-EK-A2IP-01 12 50282887 50282887 C T FAIM2 Intron 0.41 TCGA-EK-A2IP-01 12 53071257 53071257 G C KRT1 Missense_Mutation p.S324C 0.53 deleterious(0.02) probably_damaging(0.989) TCGA-EK-A2IP-01 12 55846307 55846307 C G OR6C2 Missense_Mutation p.L104V 0.44 tolerated_low_confidence(0.13) benign(0.062) TCGA-EK-A2IP-01 13 30054388 30054388 G A MTUS2 Missense_Mutation p.E1106K 0.51 deleterious(0) possibly_damaging(0.563) TCGA-EK-A2IP-01 13 41639317 41639317 G A WBP4 Silent p.L52L 0.51 TCGA-EK-A2IP-01 13 78475207 78475207 C G EDNRB Missense_Mutation p.D403H 0.40 deleterious(0) benign(0.257) TCGA-EK-A2IP-01 13 99853574 99853574 C G UBAC2 Intron 0.41 TCGA-EK-A2IP-01 14 105409305 105409305 C G AHNAK2 Silent p.L4161L 0.23 TCGA-EK-A2IP-01 14 105846429 105846429 G A PACS2 Missense_Mutation p.E355K 0.06 tolerated(0.17) benign(0.388) TCGA-EK-A2IP-01 14 23994363 23994363 C T ZFHX2 Silent p.R1596R 0.40 TCGA-EK-A2IP-01 14 51443574 51443574 C T TRIM9 3'UTR 0.18 TCGA-EK-A2IP-01 14 52957624 52957624 C A TXNDC16 Missense_Mutation p.D286Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-EK-A2IP-01 14 54976708 54976708 G A CGRRF1 Missense_Mutation p.E11K 0.22 deleterious(0) possibly_damaging(0.505) TCGA-EK-A2IP-01 14 56767130 56767130 G A PELI2 3'UTR 0.23 TCGA-EK-A2IP-01 14 70714518 70714518 G A ADAM21P1 RNA 0.26 TCGA-EK-A2IP-01 14 77583557 77583557 G C CIPC 3'UTR 0.23 TCGA-EK-A2IP-01 14 94505490 94505490 C G OTUB2 Intron 0.27 TCGA-EK-A2IP-01 14 95081110 95081110 C T SERPINA3 Missense_Mutation p.S111F 0.27 deleterious(0) possibly_damaging(0.696) TCGA-EK-A2IP-01 15 102201989 102201989 C T TARSL2 Silent p.V666V 0.35 TCGA-EK-A2IP-01 15 40659612 40659612 C G DISP2 Silent p.L433L 0.26 TCGA-EK-A2IP-01 15 40660758 40660758 C G DISP2 Silent p.L815L 0.43 TCGA-EK-A2IP-01 15 49074351 49074351 C T CEP152 Missense_Mutation p.M466I 0.36 deleterious(0.01) benign(0.149) TCGA-EK-A2IP-01 15 66821259 66821259 G A ZWILCH Missense_Mutation p.D347N 0.31 deleterious(0) probably_damaging(1) TCGA-EK-A2IP-01 15 75722632 75722632 G A SIN3A Missense_Mutation p.H29Y 0.25 tolerated_low_confidence(0.69) benign(0.337) TCGA-EK-A2IP-01 15 75983124 75983124 C T CSPG4 Silent p.L94L 0.31 TCGA-EK-A2IP-01 15 98515265 98515265 G C ARRDC4 3'UTR 0.57 TCGA-EK-A2IP-01 16 13328988 13328988 C G SHISA9 Missense_Mutation p.P333A 0.32 deleterious(0.02) benign(0.341) TCGA-EK-A2IP-01 16 20871125 20871125 C T DCUN1D3 3'UTR 0.38 TCGA-EK-A2IP-01 16 2108835 2108835 C T TSC2 Silent p.L312L 0.33 TCGA-EK-A2IP-01 16 30794051 30794051 C T ZNF629 Missense_Mutation p.R533Q 0.26 tolerated(1) benign(0.351) TCGA-EK-A2IP-01 16 3532530 3532530 C G NAA60 Missense_Mutation p.S90C 0.51 tolerated(0.1) possibly_damaging(0.823) TCGA-EK-A2IP-01 16 3533506 3533506 C G NAA60 Missense_Mutation p.L161V 0.30 deleterious(0.01) probably_damaging(0.928) TCGA-EK-A2IP-01 16 89611061 89611061 G A SPG7 Missense_Mutation p.G444S 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-EK-A2IP-01 17 10558294 10558294 G A MYH3 Nonsense_Mutation p.Q30* 0.44 TCGA-EK-A2IP-01 17 13503859 13503859 G A HS3ST3A1 Silent p.L196L 0.33 TCGA-EK-A2IP-01 17 30327783 30327783 C G SUZ12 3'UTR 0.43 TCGA-EK-A2IP-01 17 36486800 36486800 C G GPR179 Silent p.R884R 0.31 TCGA-EK-A2IP-01 17 40652734 40652734 G A ATP6V0A1 Silent p.K570K 0.30 TCGA-EK-A2IP-01 17 40705076 40705076 G A HSD17B1 Intron 0.42 TCGA-EK-A2IP-01 17 47656341 47656341 C T NXPH3 Silent p.I146I 0.58 TCGA-EK-A2IP-01 17 7144159 7144159 C T GABARAP 3'UTR 0.52 TCGA-EK-A2IP-01 17 73150490 73150490 C T HN1 Translation_Start_Site p.M1? 0.08 deleterious(0) probably_damaging(0.946) TCGA-EK-A2IP-01 17 73150646 73150646 C G HN1 5'UTR 0.09 TCGA-EK-A2IP-01 17 73263634 73263634 C T MIF4GD Silent p.L183L 0.08 TCGA-EK-A2IP-01 17 74289613 74289613 G A QRICH2 Nonsense_Mutation p.Q233* 0.82 TCGA-EK-A2IP-01 17 7919320 7919320 G C GUCY2D Missense_Mutation p.R1040P 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A2IP-01 17 8053162 8053162 C G PER1 Missense_Mutation p.E188Q 0.34 deleterious(0.03) possibly_damaging(0.864) TCGA-EK-A2IP-01 17 8216548 8216548 C G ARHGEF15 Missense_Mutation p.L304V 0.39 tolerated(0.08) benign(0.021) TCGA-EK-A2IP-01 18 29867486 29867486 C T GAREM Silent p.K358K 0.39 TCGA-EK-A2IP-01 18 40850554 40850554 G A SYT4 Missense_Mutation p.H344Y 0.78 deleterious(0) probably_damaging(0.936) TCGA-EK-A2IP-01 18 47765045 47765045 C T CCDC11 Missense_Mutation p.R415H 0.63 tolerated(0.16) benign(0.027) TCGA-EK-A2IP-01 19 14866481 14866481 G A EMR2 Silent p.F467F 0.43 TCGA-EK-A2IP-01 19 18704157 18704157 C G CRLF1 3'UTR 0.37 TCGA-EK-A2IP-01 19 22115997 22115997 C T ZNF208 Missense_Mutation p.M116I 0.29 tolerated_low_confidence(1) benign(0) TCGA-EK-A2IP-01 19 22847759 22847759 T A ZNF492 Missense_Mutation p.F430I 0.33 deleterious(0) probably_damaging(0.938) TCGA-EK-A2IP-01 19 34180272 34180272 G A CHST8 Silent p.T35T 0.30 TCGA-EK-A2IP-01 19 35655056 35655056 C T FXYD5 Intron 0.28 TCGA-EK-A2IP-01 19 39820225 39820225 C T GMFG Missense_Mutation p.R81Q 0.47 deleterious(0) benign(0.192) TCGA-EK-A2IP-01 19 422299 422299 G A SHC2 Silent p.H489H 0.75 TCGA-EK-A2IP-01 19 42829057 42829057 G C TMEM145 3'UTR 0.40 TCGA-EK-A2IP-01 19 46190854 46190854 G A SNRPD2 Missense_Mutation p.S105L 0.36 deleterious(0.04) benign(0.136) TCGA-EK-A2IP-01 19 50314640 50314640 G A FUZ Missense_Mutation p.P158S 0.51 tolerated(0.07) probably_damaging(0.986) TCGA-EK-A2IP-01 19 50314710 50314710 G A FUZ Silent p.L134L 0.50 TCGA-EK-A2IP-01 19 55019207 55019207 T C LAIR2 Missense_Mutation p.F58L 0.42 deleterious(0.01) possibly_damaging(0.759) TCGA-EK-A2IP-01 19 55329005 55329005 G A KIR3DL1 Silent p.Q17Q 0.51 TCGA-EK-A2IP-01 19 55869633 55869633 G A FAM71E2 Missense_Mutation p.T868I 0.48 tolerated(0.23) possibly_damaging(0.908) TCGA-EK-A2IP-01 19 55870057 55870057 G A FAM71E2 Missense_Mutation p.P727S 0.36 tolerated(1) benign(0) TCGA-EK-A2IP-01 19 6678241 6678241 C T C3 Missense_Mutation p.R1591K 0.55 tolerated(0.14) possibly_damaging(0.527) TCGA-EK-A2IP-01 19 748108 748108 C T PALM 3'UTR 0.70 TCGA-EK-A2IP-01 1 112042770 112042770 G C ADORA3 Intron 0.46 TCGA-EK-A2IP-01 1 14106831 14106831 C G PRDM2 Silent p.V847V 0.30 TCGA-EK-A2IP-01 1 145301734 145301734 A G NBPF10 Missense_Mutation p.K335E 0.13 benign(0.04) TCGA-EK-A2IP-01 1 151380630 151380630 G C POGZ Missense_Mutation p.S774C 0.42 deleterious(0) probably_damaging(0.998) TCGA-EK-A2IP-01 1 157062807 157062807 C A ETV3L Silent p.L240L 0.40 TCGA-EK-A2IP-01 1 201852181 201852181 G C IPO9 3'UTR 0.35 TCGA-EK-A2IP-01 1 20669844 20669844 G A VWA5B1 Missense_Mutation p.D862N 0.30 deleterious(0) possibly_damaging(0.747) TCGA-EK-A2IP-01 1 221912616 221912616 C G DUSP10 Missense_Mutation p.K157N 0.45 tolerated(0.09) benign(0.01) TCGA-EK-A2IP-01 1 2282919 2282919 C T MORN1 Intron 0.28 TCGA-EK-A2IP-01 1 228447306 228447306 G C OBSCN Missense_Mutation p.E1656Q 0.31 benign(0.08) TCGA-EK-A2IP-01 1 26161951 26161951 C T AUNIP Missense_Mutation p.E203K 0.42 tolerated(0.25) benign(0) TCGA-EK-A2IP-01 1 38509562 38509562 C T POU3F1 3'UTR 0.30 TCGA-EK-A2IP-01 1 6556607 6556607 C G PLEKHG5 Missense_Mutation p.K32N 0.33 deleterious(0.02) benign(0.023) TCGA-EK-A2IP-01 1 92979238 92979238 C G EVI5 Missense_Mutation p.R803T 0.31 tolerated_low_confidence(0.59) benign(0.001) TCGA-EK-A2IP-01 20 21695175 21695175 T A PAX1 Missense_Mutation p.C447S 0.39 deleterious_low_confidence(0) benign(0.001) TCGA-EK-A2IP-01 20 24964541 24964541 G A APMAP Silent p.L70L 0.32 TCGA-EK-A2IP-01 20 30898424 30898424 C G KIF3B Missense_Mutation p.L282V 0.46 deleterious(0) probably_damaging(0.996) TCGA-EK-A2IP-01 20 61457204 61457204 G A COL9A3 Silent p.P222P 0.48 TCGA-EK-A2IP-01 20 61915226 61915226 G A ARFGAP1 Silent p.P247P 0.45 TCGA-EK-A2IP-01 21 26979797 26979797 G A MRPL39 5'UTR 0.11 TCGA-EK-A2IP-01 21 35478319 35478319 C T SLC5A3 3'UTR 0.39 TCGA-EK-A2IP-01 22 17976528 17976528 C T CECR2 Silent p.F64F 0.35 TCGA-EK-A2IP-01 22 18572062 18572062 C A PEX26 3'UTR 0.41 TCGA-EK-A2IP-01 22 20114704 20114704 C G RANBP1 3'UTR 0.55 TCGA-EK-A2IP-01 22 20720941 20720941 G C USP41 Missense_Mutation p.I269M 0.37 deleterious(0) possibly_damaging(0.894) TCGA-EK-A2IP-01 22 30722748 30722748 G A TBC1D10A Silent p.L41L 0.45 TCGA-EK-A2IP-01 22 32853304 32853304 G C BPIFC Missense_Mutation p.Q24E 0.38 tolerated(0.23) benign(0.001) TCGA-EK-A2IP-01 22 36960240 36960240 G T CACNG2 3'UTR 0.44 TCGA-EK-A2IP-01 22 39910172 39910172 G C MIEF1 Missense_Mutation p.L412F 0.44 deleterious(0) probably_damaging(0.999) TCGA-EK-A2IP-01 22 45809660 45809660 C G RIBC2 5'UTR 0.50 TCGA-EK-A2IP-01 22 45810233 45810233 C T RIBC2 Missense_Mutation p.H49Y 0.33 tolerated(0.07) benign(0.149) TCGA-EK-A2IP-01 2 114195498 114195498 A G CBWD2 Missense_Mutation p.D18G 0.04 tolerated(0.06) benign(0.284) TCGA-EK-A2IP-01 2 141202189 141202189 C A LRP1B Missense_Mutation p.A3373S 0.61 possibly_damaging(0.694) TCGA-EK-A2IP-01 2 152580836 152580836 G C NEB Missense_Mutation p.L184V 0.46 probably_damaging(0.999) TCGA-EK-A2IP-01 2 15372596 15372596 C T NBAS Silent p.L2062L 0.36 TCGA-EK-A2IP-01 2 171702080 171702080 G C GAD1 Missense_Mutation p.K272N 0.49 deleterious(0) probably_damaging(1) TCGA-EK-A2IP-01 2 179479455 179479455 C T TTN Silent p.V16262V 0.38 TCGA-EK-A2IP-01 2 189904026 189904026 T C COL5A2 Silent p.L1299L 0.07 TCGA-EK-A2IP-01 2 202003379 202003379 C G CFLAR Intron 0.39 TCGA-EK-A2IP-01 2 210561040 210561040 C G MAP2 Missense_Mutation p.I1382M 0.67 deleterious(0) probably_damaging(0.93) TCGA-EK-A2IP-01 2 219868903 219868903 C T CCDC108 Missense_Mutation p.E1776K 0.41 tolerated(0.13) unknown(0) TCGA-EK-A2IP-01 2 219868921 219868921 C T CCDC108 Missense_Mutation p.E1770K 0.47 tolerated(0.17) unknown(0) TCGA-EK-A2IP-01 2 232646495 232646495 G C COPS7B 5'Flank 0.38 TCGA-EK-A2IP-01 2 241463182 241463182 G C ANKMY1 Intron 0.33 TCGA-EK-A2IP-01 2 30457343 30457343 C T LBH Silent p.L33L 0.44 TCGA-EK-A2IP-01 2 43451216 43451216 C T ZFP36L2 3'UTR 0.45 TCGA-EK-A2IP-01 2 61705875 61705875 C G XPO1 3'UTR 0.35 TCGA-EK-A2IP-01 2 63486499 63486499 C T WDPCP Missense_Mutation p.E620K 0.40 deleterious(0.04) benign(0.39) TCGA-EK-A2IP-01 2 8874824 8874824 C T KIDINS220 Missense_Mutation p.M1259I 0.29 deleterious(0.01) probably_damaging(0.968) TCGA-EK-A2IP-01 2 99238070 99238070 C T MGAT4A 3'UTR 0.50 TCGA-EK-A2IP-01 3 101284961 101284961 C T TRMT10C 3'UTR 0.40 TCGA-EK-A2IP-01 3 10168449 10168449 G C BRK1 3'UTR 0.74 TCGA-EK-A2IP-01 3 118931488 118931488 C T B4GALT4 Missense_Mutation p.D315N 0.47 deleterious(0) probably_damaging(1) TCGA-EK-A2IP-01 3 129127506 129127506 C T EFCAB12 Missense_Mutation p.E411K 0.48 tolerated(0.08) probably_damaging(0.998) TCGA-EK-A2IP-01 3 157820518 157820518 G A SHOX2 Silent p.F192F 0.36 TCGA-EK-A2IP-01 3 184090787 184090787 C G THPO Silent p.L192L 0.50 TCGA-EK-A2IP-01 3 186760543 186760543 C T ST6GAL1 Missense_Mutation p.L18F 0.46 benign(0.025) TCGA-EK-A2IP-01 4 118004992 118004992 G A TRAM1L1 3'UTR 0.28 TCGA-EK-A2IP-01 4 120419875 120419875 C G PDE5A Missense_Mutation p.E837Q 0.40 tolerated(0.15) benign(0.016) TCGA-EK-A2IP-01 4 17585203 17585203 C T LAP3 Silent p.L159L 0.42 TCGA-EK-A2IP-01 4 25014039 25014039 G A LGI2 Silent p.I246I 0.44 TCGA-EK-A2IP-01 4 47938939 47938939 G A CNGA1 Silent p.L593L 0.31 TCGA-EK-A2IP-01 4 780459 780459 C T CPLX1 Missense_Mutation p.E79K 0.55 deleterious(0.02) possibly_damaging(0.747) TCGA-EK-A2IP-01 4 82056354 82056354 C T PRKG2 Silent p.L577L 0.43 TCGA-EK-A2IP-01 5 131280423 131280423 C G AC034228.4 Intron 0.77 TCGA-EK-A2IP-01 5 140175000 140175000 C T PCDHA2 Missense_Mutation p.R151W 0.66 deleterious_low_confidence(0.01) benign(0.06) TCGA-EK-A2IP-01 5 140580667 140580667 G T PCDHB11 Missense_Mutation p.L440F 0.65 tolerated_low_confidence(0.14) possibly_damaging(0.595) TCGA-EK-A2IP-01 5 140774555 140774555 C T PCDHGA8 Silent p.L725L 0.79 TCGA-EK-A2IP-01 5 42721592 42721592 G C GHR 3'UTR 0.48 TCGA-EK-A2IP-01 6 106556263 106556263 C T PRDM1 3'UTR 0.40 TCGA-EK-A2IP-01 6 131995358 131995358 C G ENPP3 Silent p.L233L 0.37 TCGA-EK-A2IP-01 6 134499000 134499000 G A SGK1 Intron 0.51 TCGA-EK-A2IP-01 6 166580205 166580205 C G T Missense_Mutation p.E116Q 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-EK-A2IP-01 6 37140566 37140566 G A PIM1 Intron 0.31 TCGA-EK-A2IP-01 6 37142135 37142135 G A PIM1 3'UTR 0.40 TCGA-EK-A2IP-01 6 37143119 37143119 G C PIM1 3'UTR 0.19 TCGA-EK-A2IP-01 6 42957400 42957400 G A PPP2R5D Missense_Mutation p.D27N 0.41 tolerated(0.57) probably_damaging(0.98) TCGA-EK-A2IP-01 6 44249874 44249874 G C TCTE1 Missense_Mutation p.I423M 0.32 deleterious(0.03) possibly_damaging(0.648) TCGA-EK-A2IP-01 7 120591195 120591195 C T ING3 Intron 0.70 TCGA-EK-A2IP-01 7 142498891 142498891 C T TRBC2 Silent p.V56V 0.22 TCGA-EK-A2IP-01 7 143017825 143017825 C T CLCN1 Silent p.L124L 0.34 TCGA-EK-A2IP-01 7 15725543 15725543 C T MEOX2 Missense_Mutation p.R162Q 0.43 tolerated(0.07) probably_damaging(0.953) TCGA-EK-A2IP-01 7 20193818 20193818 C G MACC1 Missense_Mutation p.E782Q 0.33 tolerated(0.25) benign(0.111) TCGA-EK-A2IP-01 7 26224804 26224804 C G NFE2L3 Missense_Mutation p.H496D 0.47 deleterious(0) probably_damaging(0.988) TCGA-EK-A2IP-01 7 2802452 2802452 C T GNA12 Intron 0.38 TCGA-EK-A2IP-01 7 45928126 45928126 G T IGFBP1 5'UTR 0.39 TCGA-EK-A2IP-01 7 66423438 66423438 G A TMEM248 3'UTR 0.38 TCGA-EK-A2IP-01 7 82764339 82764339 G A PCLO Nonsense_Mutation p.Q843* 0.45 TCGA-EK-A2IP-01 7 91794192 91794192 C T LRRD1 Missense_Mutation p.E109K 0.39 tolerated(0.12) benign(0.011) TCGA-EK-A2IP-01 7 91794375 91794375 C T LRRD1 Missense_Mutation p.E48K 0.49 tolerated_low_confidence(0.12) benign(0.005) TCGA-EK-A2IP-01 7 98557093 98557093 G A TRRAP Missense_Mutation p.D2150N 0.24 probably_damaging(0.943) TCGA-EK-A2IP-01 7 99042428 99042428 C T CPSF4 Silent p.V40V 0.26 TCGA-EK-A2IP-01 7 99669626 99669626 C T ZNF3 Missense_Mutation p.E161K 0.43 tolerated(0.62) benign(0.001) TCGA-EK-A2IP-01 8 12594212 12594212 C G LONRF1 Missense_Mutation p.M483I 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-EK-A2IP-01 8 144992696 144992696 C T PLEC Missense_Mutation p.E3902K 0.39 probably_damaging(0.999) TCGA-EK-A2IP-01 8 144993135 144993135 C T PLEC Missense_Mutation p.M3755I 0.33 possibly_damaging(0.54) TCGA-EK-A2IP-01 8 30889857 30889857 T A PURG Missense_Mutation p.R148W 0.58 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-EK-A2IP-01 8 48777246 48777246 G A PRKDC Silent p.F1813F 0.25 TCGA-EK-A2IP-01 8 70553066 70553066 G A SULF1 Missense_Mutation p.D859N 0.33 tolerated_low_confidence(0.16) benign(0.001) TCGA-EK-A2IP-01 8 77767017 77767017 C G ZFHX4 Silent p.L2620L 0.29 TCGA-EK-A2IP-01 9 116859689 116859689 G A KIF12 Missense_Mutation p.P42S 0.33 tolerated(0.23) benign(0.103) TCGA-EK-A2IP-01 9 117692667 117692667 C T TNFSF8 5'UTR 0.29 TCGA-EK-A2IP-01 9 127557323 127557323 C T OLFML2A Silent p.L125L 0.44 TCGA-EK-A2IP-01 9 127738408 127738408 G C SCAI Missense_Mutation p.P485A 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-EK-A2IP-01 9 131843403 131843403 C T DOLPP1 5'UTR 0.37 TCGA-EK-A2IP-01 9 135778087 135778087 C G TSC1 Missense_Mutation p.E766Q 0.39 tolerated(0.16) benign(0.022) TCGA-EK-A2IP-01 9 135973839 135973839 C T RALGDS 3'UTR 0.19 TCGA-EK-A2IP-01 9 5358232 5358232 C T PLGRKT 3'UTR 0.29 TCGA-EK-A2IP-01 9 77301132 77301132 C T RORB 3'UTR 0.38 TCGA-EK-A2IP-01 X 129306117 129306117 G T RAB33A Silent p.S27S 0.37 TCGA-EK-A2IP-01 X 129306267 129306267 C T RAB33A Silent p.T77T 0.41 TCGA-EK-A2IP-01 X 13778350 13778350 A T OFD1 Missense_Mutation p.N591Y 0.42 deleterious(0) possibly_damaging(0.731) TCGA-EK-A2IP-01 X 30236705 30236705 G A MAGEB2 Missense_Mutation p.R3H 0.42 deleterious(0.03) probably_damaging(1) TCGA-EK-A2IP-01 X 49459350 49459350 G C PAGE1 Missense_Mutation p.I8M 0.33 tolerated(0.06) possibly_damaging(0.904) TCGA-EK-A2IP-01 X 49958883 49958883 C A AKAP4 Missense_Mutation p.D161Y 0.49 deleterious(0) probably_damaging(0.977) TCGA-EK-A2IP-01 X 8764329 8764329 C G FAM9A Missense_Mutation p.L156F 0.37 deleterious_low_confidence(0.02) probably_damaging(0.934) TCGA-EK-A2PG-01 10 101090702 101090702 G C CNNM1 Missense_Mutation p.E520Q 0.14 deleterious(0.02) probably_damaging(1) TCGA-EK-A2PG-01 10 101923794 101923794 C A ERLIN1 Nonsense_Mutation p.E208* 0.15 TCGA-EK-A2PG-01 10 102257878 102257878 C T SEC31B Missense_Mutation p.D591N 0.21 deleterious(0) probably_damaging(0.969) TCGA-EK-A2PG-01 10 103292049 103292049 C T BTRC Intron 0.26 TCGA-EK-A2PG-01 10 105141483 105141483 C T TAF5 Silent p.L473L 0.36 TCGA-EK-A2PG-01 10 106927067 106927067 G A SORCS3 Missense_Mutation p.V621M 0.25 deleterious(0) possibly_damaging(0.82) TCGA-EK-A2PG-01 10 114575252 114575252 C G VTI1A 3'UTR 0.38 TCGA-EK-A2PG-01 10 116064526 116064526 G A AFAP1L2 Silent p.L412L 0.17 TCGA-EK-A2PG-01 10 119805356 119805356 C A RAB11FIP2 Missense_Mutation p.D107Y 0.25 deleterious(0) probably_damaging(0.915) TCGA-EK-A2PG-01 10 12191948 12191948 G T SEC61A2 Silent p.L150L 0.13 TCGA-EK-A2PG-01 10 124008568 124008568 G A TACC2 Missense_Mutation p.E2853K 0.10 probably_damaging(1) TCGA-EK-A2PG-01 10 126677841 126677841 G C CTBP2 3'UTR 0.26 TCGA-EK-A2PG-01 10 128193393 128193393 C G C10orf90 Missense_Mutation p.E126Q 0.12 tolerated(0.12) possibly_damaging(0.731) TCGA-EK-A2PG-01 10 129906554 129906554 C A MKI67 Nonsense_Mutation p.E1184* 0.17 TCGA-EK-A2PG-01 10 134621949 134621949 C T TTC40 Silent p.Q2708Q 0.20 TCGA-EK-A2PG-01 10 134942343 134942343 G A GPR123 Silent p.A337A 0.32 TCGA-EK-A2PG-01 10 13538811 13538811 G C BEND7 Missense_Mutation p.L124V 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EK-A2PG-01 10 15254946 15254946 C T FAM171A1 Missense_Mutation p.E881K 0.21 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 10 16526443 16526443 G A PTER Silent p.L20L 0.35 TCGA-EK-A2PG-01 10 21073958 21073958 G A NEBL 3'UTR 0.20 TCGA-EK-A2PG-01 10 21962686 21962686 C T MLLT10 Nonsense_Mutation p.Q487* 0.19 TCGA-EK-A2PG-01 10 298777 298777 G C ZMYND11 3'UTR 0.23 TCGA-EK-A2PG-01 10 298840 298840 C G ZMYND11 3'UTR 0.19 TCGA-EK-A2PG-01 10 32337443 32337443 T G KIF5B Missense_Mutation p.S55R 0.35 deleterious(0.01) benign(0.079) TCGA-EK-A2PG-01 10 48372339 48372339 C T ZNF488 3'UTR 0.17 TCGA-EK-A2PG-01 10 50108319 50108319 C T WDFY4 Silent p.F2497F 0.22 TCGA-EK-A2PG-01 10 50732496 50732496 C T ERCC6-PGBD3 Missense_Mutation p.R327H 0.33 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EK-A2PG-01 10 70204733 70204733 C T DNA2 Missense_Mutation p.E475K 0.15 tolerated(0.3) benign(0.149) TCGA-EK-A2PG-01 10 70706374 70706374 G T DDX50 Silent p.R734R 0.23 TCGA-EK-A2PG-01 10 71255381 71255381 G C TSPAN15 Missense_Mutation p.R130T 0.16 deleterious(0.03) benign(0.388) TCGA-EK-A2PG-01 10 7218004 7218004 C T SFMBT2 Silent p.L644L 0.15 TCGA-EK-A2PG-01 10 75051773 75051773 C G TTC18 Splice_Site p.X661_splice 0.21 TCGA-EK-A2PG-01 10 75561979 75561979 G A NDST2 3'UTR 0.21 TCGA-EK-A2PG-01 10 75562100 75562100 G A NDST2 3'UTR 0.23 TCGA-EK-A2PG-01 10 75757941 75757941 G A VCL 5'UTR 0.62 TCGA-EK-A2PG-01 10 82267046 82267046 C T TSPAN14 Silent p.V65V 0.21 TCGA-EK-A2PG-01 10 94675644 94675644 G A EXOC6 Missense_Mutation p.E265K 0.15 tolerated(0.35) benign(0.002) TCGA-EK-A2PG-01 10 94675656 94675656 G T EXOC6 Nonsense_Mutation p.E269* 0.13 TCGA-EK-A2PG-01 10 97158831 97158831 C T SORBS1 Silent p.V367V 0.24 TCGA-EK-A2PG-01 10 98823227 98823227 C T SLIT1 Missense_Mutation p.E260K 0.21 tolerated(0.1) possibly_damaging(0.771) TCGA-EK-A2PG-01 10 99228834 99228834 C T MMS19 Missense_Mutation p.E318K 0.25 deleterious(0) possibly_damaging(0.772) TCGA-EK-A2PG-01 11 111612271 111612271 G C PPP2R1B Intron 0.23 TCGA-EK-A2PG-01 11 111746780 111746780 C T FDXACB1 Silent p.E247E 0.32 TCGA-EK-A2PG-01 11 113661713 113661713 G C ATF4P4 RNA 0.25 TCGA-EK-A2PG-01 11 117089862 117089862 C G PCSK7 Missense_Mutation p.E448Q 0.36 deleterious(0.02) benign(0.094) TCGA-EK-A2PG-01 11 117104984 117104984 G A RNF214 Intron 0.28 TCGA-EK-A2PG-01 11 118772086 118772086 G A BCL9L Missense_Mutation p.T789I 0.35 benign(0.36) TCGA-EK-A2PG-01 11 122931451 122931451 C T HSPA8 Missense_Mutation p.M87I 0.50 tolerated_low_confidence(0.16) benign(0.018) TCGA-EK-A2PG-01 11 12958994 12958994 G C TEAD1 3'UTR 0.22 TCGA-EK-A2PG-01 11 13391231 13391231 C G ARNTL Missense_Mutation p.S246C 0.43 deleterious(0) probably_damaging(0.995) TCGA-EK-A2PG-01 11 17378247 17378247 G A NCR3LG1 Silent p.L40L 0.24 TCGA-EK-A2PG-01 11 18042628 18042628 C G TPH1 Missense_Mutation p.K415N 0.30 tolerated(0.15) benign(0.017) TCGA-EK-A2PG-01 11 18587959 18587959 G A UEVLD Missense_Mutation p.S143F 0.19 deleterious(0) possibly_damaging(0.797) TCGA-EK-A2PG-01 11 19259631 19259631 G C E2F8 Missense_Mutation p.L22V 0.26 deleterious(0.02) possibly_damaging(0.769) TCGA-EK-A2PG-01 11 2424430 2424430 G C TSSC4 Missense_Mutation p.Q189H 0.28 tolerated(0.06) possibly_damaging(0.562) TCGA-EK-A2PG-01 11 30034510 30034510 A G KCNA4 5'UTR 0.71 TCGA-EK-A2PG-01 11 30352826 30352826 C T ARL14EP Missense_Mutation p.P111S 0.44 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PG-01 11 31452441 31452441 C T DNAJC24 3'UTR 0.26 TCGA-EK-A2PG-01 11 35454134 35454134 C T PAMR1 Missense_Mutation p.D662N 0.32 tolerated(0.08) probably_damaging(0.967) TCGA-EK-A2PG-01 11 407878 407878 G A SIGIRR Silent p.V140V 0.31 TCGA-EK-A2PG-01 11 45274066 45274066 C T SYT13 Missense_Mutation p.R251H 0.19 tolerated(0.09) possibly_damaging(0.716) TCGA-EK-A2PG-01 11 45931542 45931542 C A PEX16 3'UTR 0.33 TCGA-EK-A2PG-01 11 4674952 4674952 C G OR51E1 3'UTR 0.38 TCGA-EK-A2PG-01 11 57093827 57093827 G C SSRP1 3'UTR 0.19 TCGA-EK-A2PG-01 11 60075671 60075671 G A MS4A4A 3'UTR 0.15 TCGA-EK-A2PG-01 11 62746957 62746957 C A SLC22A6 Intron 0.24 TCGA-EK-A2PG-01 11 64877380 64877380 C T VPS51 Silent p.T621T 0.35 TCGA-EK-A2PG-01 11 65307845 65307845 C G LTBP3 Missense_Mutation p.E1039Q 0.29 deleterious(0) probably_damaging(0.987) TCGA-EK-A2PG-01 11 65390978 65390978 G A PCNXL3 Missense_Mutation p.E792K 0.29 deleterious(0) possibly_damaging(0.836) TCGA-EK-A2PG-01 11 66276797 66276797 G A DPP3 3'UTR 0.23 TCGA-EK-A2PG-01 11 66276984 66276984 G A DPP3 3'UTR 0.32 TCGA-EK-A2PG-01 11 67173470 67173470 C G TBC1D10C Silent p.L188L 0.18 TCGA-EK-A2PG-01 11 67926451 67926451 C G SUV420H1 Missense_Mutation p.L454F 0.27 deleterious(0.01) possibly_damaging(0.774) TCGA-EK-A2PG-01 11 6867763 6867763 C T OR10A5 Missense_Mutation p.P284S 0.22 deleterious(0.04) possibly_damaging(0.687) TCGA-EK-A2PG-01 11 71907080 71907080 G C FOLR1 Missense_Mutation p.Q211H 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-EK-A2PG-01 11 727070 727070 C G EPS8L2 3'UTR 0.22 TCGA-EK-A2PG-01 11 77812242 77812242 C G ALG8 Splice_Site p.X450_splice 0.27 TCGA-EK-A2PG-01 11 7949991 7949991 G A OR10A6 Silent p.F73F 0.27 TCGA-EK-A2PG-01 11 82905689 82905689 C T ANKRD42 5'UTR 0.22 TCGA-EK-A2PG-01 11 8737223 8737223 G A ST5 Missense_Mutation p.S591F 0.29 deleterious(0.02) probably_damaging(0.926) TCGA-EK-A2PG-01 11 89133529 89133529 C A NOX4 Nonsense_Mutation p.G289* 0.11 TCGA-EK-A2PG-01 11 93461907 93461907 G T KIAA1731 Missense_Mutation p.D2408Y 0.33 deleterious(0) probably_damaging(0.986) TCGA-EK-A2PG-01 11 93463406 93463406 G C KIAA1731 Missense_Mutation p.E2593Q 0.37 tolerated(0.06) benign(0.096) TCGA-EK-A2PG-01 11 93464199 93464199 G A KIAA1731 3'Flank 0.38 TCGA-EK-A2PG-01 11 94278935 94278935 C A FUT4 3'UTR 0.25 TCGA-EK-A2PG-01 11 94278963 94278963 C T FUT4 3'UTR 0.25 TCGA-EK-A2PG-01 11 94759225 94759225 C G KDM4E Silent p.V168V 0.30 TCGA-EK-A2PG-01 11 95521679 95521679 C G FAM76B Missense_Mutation p.E46Q 0.41 deleterious(0) probably_damaging(0.953) TCGA-EK-A2PG-01 11 96075102 96075102 G T MAML2 5'UTR 0.33 TCGA-EK-A2PG-01 12 106633120 106633120 G T CKAP4 Silent p.P497P 0.35 TCGA-EK-A2PG-01 12 107367619 107367619 G A C12orf23 3'UTR 0.36 TCGA-EK-A2PG-01 12 110221141 110221141 G C TRPV4 3'UTR 0.29 TCGA-EK-A2PG-01 12 110221470 110221470 G A TRPV4 Nonsense_Mutation p.Q858* 0.31 TCGA-EK-A2PG-01 12 113448279 113448279 G C OAS2 Missense_Mutation p.R717T 0.26 deleterious_low_confidence(0) benign(0.264) TCGA-EK-A2PG-01 12 113715092 113715092 C T TPCN1 Silent p.F441F 0.18 TCGA-EK-A2PG-01 12 11420837 11420837 G A PRB3 Missense_Mutation p.R116C 0.30 deleterious(0.01) unknown(0) TCGA-EK-A2PG-01 12 120124075 120124075 G C CIT 3'UTR 0.27 TCGA-EK-A2PG-01 12 120621381 120621381 C A GCN1L1 Missense_Mutation p.W139C 0.20 probably_damaging(0.997) TCGA-EK-A2PG-01 12 120894893 120894893 G C GATC Missense_Mutation p.R90T 0.22 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 12 122326835 122326835 G C PSMD9 Missense_Mutation p.E25Q 0.29 tolerated(0.6) benign(0.01) TCGA-EK-A2PG-01 12 122677437 122677437 C G LRRC43 Missense_Mutation p.S412W 0.24 deleterious(0.01) possibly_damaging(0.679) TCGA-EK-A2PG-01 12 123062283 123062283 G C KNTC1 Missense_Mutation p.R929T 0.34 deleterious(0.01) probably_damaging(0.966) TCGA-EK-A2PG-01 12 132446159 132446159 C G EP400 Missense_Mutation p.S332C 0.17 unknown(0) TCGA-EK-A2PG-01 12 132589579 132589579 G A EP400NL Silent p.K206K 0.23 TCGA-EK-A2PG-01 12 132589811 132589811 G A EP400NL Missense_Mutation p.E284K 0.21 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-EK-A2PG-01 12 132589847 132589847 G A EP400NL Missense_Mutation p.E296K 0.15 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-EK-A2PG-01 12 133197112 133197112 C G P2RX2 Missense_Mutation p.F239L 0.24 deleterious(0.03) possibly_damaging(0.579) TCGA-EK-A2PG-01 12 18865847 18865847 G T PLCZ1 Missense_Mutation p.H215N 0.25 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 12 22697436 22697436 C T C2CD5 5'UTR 0.33 TCGA-EK-A2PG-01 12 27648695 27648695 C T SMCO2 Missense_Mutation p.S247F 0.18 deleterious(0.04) benign(0.001) TCGA-EK-A2PG-01 12 27809592 27809592 C T PPFIBP1 Missense_Mutation p.S278F 0.19 deleterious(0) benign(0.282) TCGA-EK-A2PG-01 12 31613205 31613205 C G DENND5B Missense_Mutation p.D339H 0.24 deleterious(0.01) possibly_damaging(0.766) TCGA-EK-A2PG-01 12 465702 465702 G C KDM5A Nonsense_Mutation p.S225* 0.35 TCGA-EK-A2PG-01 12 46591766 46591766 G C SLC38A1 Silent p.L400L 0.18 TCGA-EK-A2PG-01 12 47186809 47186809 C T SLC38A4 Missense_Mutation p.E16K 0.27 tolerated(0.27) benign(0.008) TCGA-EK-A2PG-01 12 4881842 4881842 C A GALNT8 3'UTR 0.25 TCGA-EK-A2PG-01 12 49212635 49212635 G A CACNB3 5'UTR 0.40 TCGA-EK-A2PG-01 12 49254855 49254855 C G RND1 Missense_Mutation p.K126N 0.38 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PG-01 12 5020790 5020790 C T KCNA1 Silent p.F82F 0.24 TCGA-EK-A2PG-01 12 50476634 50476634 C G ASIC1 3'UTR 0.24 TCGA-EK-A2PG-01 12 52376575 52376575 G T ACVR1B Missense_Mutation p.R306I 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-EK-A2PG-01 12 53207817 53207817 C G KRT4 Missense_Mutation p.R9P 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.769) TCGA-EK-A2PG-01 12 53689306 53689306 G A PFDN5 5'UTR 0.30 TCGA-EK-A2PG-01 12 55422987 55422987 C G NEUROD4 3'UTR 0.18 TCGA-EK-A2PG-01 12 55423100 55423100 C T NEUROD4 3'UTR 0.28 TCGA-EK-A2PG-01 12 5603482 5603482 C T NTF3 Silent p.L47L 0.25 TCGA-EK-A2PG-01 12 56515904 56515904 G C ZC3H10 3'UTR 0.23 TCGA-EK-A2PG-01 12 56745189 56745189 C T STAT2 Silent p.L276L 0.30 TCGA-EK-A2PG-01 12 57039674 57039674 G A ATP5B Missense_Mutation p.S25L 0.32 tolerated_low_confidence(0.78) benign(0) TCGA-EK-A2PG-01 12 58190249 58190249 G A TSFM Silent p.P308P 0.37 TCGA-EK-A2PG-01 12 59266440 59266440 G A LRIG3 Nonsense_Mutation p.Q1092* 0.24 TCGA-EK-A2PG-01 12 62103080 62103080 A G FAM19A2 3'UTR 0.22 TCGA-EK-A2PG-01 12 6573351 6573351 C G VAMP1 3'UTR 0.28 TCGA-EK-A2PG-01 12 6703682 6703682 C G CHD4 Missense_Mutation p.E752D 0.30 deleterious(0.01) benign(0.057) TCGA-EK-A2PG-01 12 6981406 6981406 C G SPSB2 Missense_Mutation p.R220S 0.15 deleterious(0.01) benign(0.181) TCGA-EK-A2PG-01 12 6981744 6981744 C T SPSB2 Missense_Mutation p.V108M 0.11 deleterious(0) probably_damaging(0.991) TCGA-EK-A2PG-01 12 70048688 70048688 C T BEST3 Silent p.%3D 0.28 TCGA-EK-A2PG-01 12 7052772 7052772 C G C12orf57 5'Flank 0.18 TCGA-EK-A2PG-01 12 7289646 7289646 G A CLSTN3 Missense_Mutation p.V384I 0.29 tolerated(0.09) benign(0.019) TCGA-EK-A2PG-01 12 7640557 7640557 C T CD163 Missense_Mutation p.C516Y 0.22 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 12 96275268 96275268 C T CCDC38 Missense_Mutation p.D329N 0.36 deleterious(0.02) possibly_damaging(0.71) TCGA-EK-A2PG-01 12 96679840 96679840 G C CDK17 Missense_Mutation p.L435V 0.40 deleterious(0.04) benign(0.009) TCGA-EK-A2PG-01 12 97330437 97330437 C T NEDD1 Silent p.F263F 0.15 TCGA-EK-A2PG-01 13 108881678 108881678 C T ABHD13 Missense_Mutation p.H38Y 0.11 tolerated(0.77) benign(0.014) TCGA-EK-A2PG-01 13 109365026 109365026 G C MYO16 Missense_Mutation p.E82Q 0.12 tolerated(0.1) possibly_damaging(0.832) TCGA-EK-A2PG-01 13 110831667 110831667 A G COL4A1 Silent p.V765V 0.26 TCGA-EK-A2PG-01 13 114150193 114150193 C T TMCO3 Silent p.F99F 0.45 TCGA-EK-A2PG-01 13 28608102 28608102 C T FLT3 Missense_Mutation p.G622R 0.18 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 13 28868250 28868250 G C PAN3 3'Flank 0.17 TCGA-EK-A2PG-01 13 29599166 29599166 G A MTUS2 Missense_Mutation p.E121K 0.25 tolerated(0.05) benign(0.046) TCGA-EK-A2PG-01 13 32805362 32805362 C G FRY Missense_Mutation p.Q1818E 0.10 tolerated(0.27) benign(0.348) TCGA-EK-A2PG-01 13 35736037 35736037 C G NBEA Missense_Mutation p.P1338A 0.54 tolerated(0.86) benign(0.003) TCGA-EK-A2PG-01 13 43597830 43597830 C T DNAJC15 Missense_Mutation p.S23L 0.57 deleterious_low_confidence(0.03) benign(0.079) TCGA-EK-A2PG-01 13 45768695 45768695 C T KCTD4 Missense_Mutation p.R3H 0.33 tolerated_low_confidence(0.2) unknown(0) TCGA-EK-A2PG-01 13 58207445 58207445 C T PCDH17 Silent p.N255N 0.13 TCGA-EK-A2PG-01 13 61988033 61988033 C T PCDH20 Missense_Mutation p.E67K 0.25 deleterious(0) possibly_damaging(0.829) TCGA-EK-A2PG-01 13 73539531 73539531 G A PIBF1 Silent p.E651E 0.12 TCGA-EK-A2PG-01 13 76395533 76395533 C T LMO7 Nonsense_Mutation p.Q577* 0.11 TCGA-EK-A2PG-01 13 77625989 77625989 C G MYCBP2 Missense_Mutation p.R4533T 0.11 benign(0.053) TCGA-EK-A2PG-01 13 78320653 78320653 C T SLAIN1 Silent p.L143L 0.28 TCGA-EK-A2PG-01 13 79190976 79190976 G T RNF219 Missense_Mutation p.S307Y 0.16 deleterious(0.04) benign(0.332) TCGA-EK-A2PG-01 13 86370594 86370594 G A SLITRK6 Missense_Mutation p.S17F 0.06 tolerated(0.73) benign(0.143) TCGA-EK-A2PG-01 13 88329806 88329806 C T SLITRK5 Silent p.G721G 0.17 TCGA-EK-A2PG-01 13 95727803 95727803 G A ABCC4 Missense_Mutation p.R897W 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2PG-01 13 96234514 96234514 C T DZIP1 Missense_Mutation p.D860N 0.12 deleterious(0) possibly_damaging(0.867) TCGA-EK-A2PG-01 14 102805188 102805188 G T ZNF839 Silent p.R565R 0.32 TCGA-EK-A2PG-01 14 103988711 103988711 C T CKB Silent p.A40A 0.28 TCGA-EK-A2PG-01 14 105477866 105477866 G A CDCA4 Missense_Mutation p.S134L 0.38 tolerated(0.18) benign(0.027) TCGA-EK-A2PG-01 14 105995723 105995723 C G TMEM121 Missense_Mutation p.F184L 0.21 deleterious(0.01) probably_damaging(0.969) TCGA-EK-A2PG-01 14 106780579 106780579 C A IGHV4-28 Missense_Mutation p.K95N 0.25 deleterious(0.01) possibly_damaging(0.773) TCGA-EK-A2PG-01 14 22887341 22887341 G C TRDV2 5'Flank 0.32 TCGA-EK-A2PG-01 14 23354206 23354206 C G REM2 Missense_Mutation p.H143D 0.18 tolerated(0.22) probably_damaging(0.986) TCGA-EK-A2PG-01 14 23421630 23421630 C T HAUS4 Silent p.L79L 0.16 TCGA-EK-A2PG-01 14 24003250 24003250 G A ZFHX2 Missense_Mutation p.P429S 0.29 probably_damaging(0.998) TCGA-EK-A2PG-01 14 24791337 24791337 G A ADCY4 Missense_Mutation p.L841F 0.27 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PG-01 14 29261122 29261122 G A C14orf23 Missense_Mutation p.M53I 0.40 tolerated_low_confidence(0.21) benign(0.043) TCGA-EK-A2PG-01 14 33291517 33291517 C T AKAP6 Missense_Mutation p.R1500C 0.31 tolerated_low_confidence(0.13) benign(0) TCGA-EK-A2PG-01 14 45693269 45693269 C G MIS18BP1 Missense_Mutation p.E841Q 0.29 tolerated(0.13) possibly_damaging(0.616) TCGA-EK-A2PG-01 14 50101845 50101845 G A DNAAF2 Missense_Mutation p.S8L 0.27 deleterious(0) probably_damaging(0.968) TCGA-EK-A2PG-01 14 52734613 52734613 C A PTGDR Missense_Mutation p.F27L 0.40 deleterious(0) probably_damaging(0.989) TCGA-EK-A2PG-01 14 61747694 61747694 T C TMEM30B Missense_Mutation p.N58D 0.30 tolerated(0.31) benign(0.006) TCGA-EK-A2PG-01 14 61748261 61748261 G A TMEM30B 5'UTR 0.32 TCGA-EK-A2PG-01 14 64990421 64990421 G A ZBTB1 3'UTR 0.15 TCGA-EK-A2PG-01 14 69995102 69995102 G A PLEKHD1 Missense_Mutation p.G496E 0.30 deleterious_low_confidence(0.04) benign(0.008) TCGA-EK-A2PG-01 14 70237973 70237973 G A SRSF5 Missense_Mutation p.R205H 0.19 deleterious(0.04) unknown(0) TCGA-EK-A2PG-01 14 74041640 74041640 G A ACOT2 Missense_Mutation p.G292E 0.27 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 14 74156098 74156098 G A DNAL1 Missense_Mutation p.E138K 0.18 tolerated(0.12) benign(0.031) TCGA-EK-A2PG-01 14 77712334 77712334 C T TMEM63C Silent p.F500F 0.20 TCGA-EK-A2PG-01 14 79933648 79933648 A T NRXN3 Missense_Mutation p.D743V 0.25 deleterious(0) benign(0.007) TCGA-EK-A2PG-01 14 81534646 81534646 C T TSHR Silent p.F97F 0.22 TCGA-EK-A2PG-01 14 89626750 89626750 G A FOXN3 3'UTR 0.40 TCGA-EK-A2PG-01 14 90754812 90754812 C T NRDE2 Silent p.L969L 0.26 TCGA-EK-A2PG-01 14 90755022 90755022 G A NRDE2 Silent p.S899S 0.26 TCGA-EK-A2PG-01 15 23303929 23303929 G A HERC2P2 RNA 0.21 TCGA-EK-A2PG-01 15 24928043 24928043 C G NPAP1 3'UTR 0.30 TCGA-EK-A2PG-01 15 26791514 26791514 G A GABRB3 3'UTR 0.17 TCGA-EK-A2PG-01 15 31357253 31357253 G A TRPM1 Intron 0.15 TCGA-EK-A2PG-01 15 33954946 33954946 G C RYR3 Missense_Mutation p.D1739H 0.07 benign(0.004) TCGA-EK-A2PG-01 15 42434798 42434798 C T PLA2G4F Missense_Mutation p.E753K 0.18 tolerated(0.12) benign(0.016) TCGA-EK-A2PG-01 15 42434897 42434897 C T PLA2G4F Missense_Mutation p.E720K 0.29 tolerated(0.27) possibly_damaging(0.489) TCGA-EK-A2PG-01 15 42853526 42853526 G C HAUS2 Missense_Mutation p.E105D 0.21 deleterious(0.03) possibly_damaging(0.803) TCGA-EK-A2PG-01 15 43103915 43103915 G T TTBK2 Missense_Mutation p.Q223K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A2PG-01 15 43817874 43817874 G A MAP1A Silent p.V1401V 0.13 TCGA-EK-A2PG-01 15 43893150 43893150 G A STRC Silent p.F1588F 0.11 TCGA-EK-A2PG-01 15 51696532 51696532 G A GLDN Missense_Mutation p.D413N 0.33 tolerated(1) benign(0.023) TCGA-EK-A2PG-01 15 51778394 51778394 G A DMXL2 Silent p.F1786F 0.20 TCGA-EK-A2PG-01 15 52656783 52656783 C T MYO5A Missense_Mutation p.D1093N 0.24 deleterious(0.01) benign(0.028) TCGA-EK-A2PG-01 15 55912932 55912932 G C PRTG Missense_Mutation p.P1043A 0.20 deleterious(0.01) possibly_damaging(0.499) TCGA-EK-A2PG-01 15 63341214 63341214 C T TPM1 Intron 0.19 TCGA-EK-A2PG-01 15 63619425 63619425 G A CA12 Silent p.I305I 0.14 TCGA-EK-A2PG-01 15 63916527 63916527 C G HERC1 Splice_Site p.X4426_splice 0.30 TCGA-EK-A2PG-01 15 63918234 63918234 C T HERC1 Missense_Mutation p.D4409N 0.26 probably_damaging(0.995) TCGA-EK-A2PG-01 15 64039150 64039150 C A HERC1 Silent p.L829L 0.13 TCGA-EK-A2PG-01 15 64460459 64460459 C G CSNK1G1 3'UTR 0.24 TCGA-EK-A2PG-01 15 65756239 65756239 G A DPP8 Missense_Mutation p.L627F 0.16 tolerated(0.7) benign(0.008) TCGA-EK-A2PG-01 15 67547055 67547055 G A AAGAB 5'UTR 0.27 TCGA-EK-A2PG-01 15 72120255 72120255 C A MYO9A Nonsense_Mutation p.E2385* 0.22 TCGA-EK-A2PG-01 15 72172110 72172110 C T MYO9A Silent p.L1897L 0.19 TCGA-EK-A2PG-01 15 74751128 74751128 C T UBL7 Silent p.E27E 0.09 TCGA-EK-A2PG-01 15 75105286 75105286 C T LMAN1L Missense_Mutation p.R31C 0.15 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 15 75664219 75664219 G A SIN3A 3'UTR 0.19 TCGA-EK-A2PG-01 15 75941967 75941967 G A SNX33 Missense_Mutation p.R175Q 0.28 tolerated(0.25) probably_damaging(0.978) TCGA-EK-A2PG-01 15 77329469 77329469 G A PSTPIP1 Silent p.R401R 0.27 TCGA-EK-A2PG-01 15 77426003 77426003 C G PEAK1 Missense_Mutation p.D1141H 0.14 deleterious(0.01) possibly_damaging(0.867) TCGA-EK-A2PG-01 15 79189516 79189516 G C MORF4L1 3'UTR 0.08 TCGA-EK-A2PG-01 15 79189923 79189923 G A MORF4L1 3'UTR 0.13 TCGA-EK-A2PG-01 15 79764458 79764458 C T KIAA1024 3'UTR 0.21 TCGA-EK-A2PG-01 15 80464522 80464522 G C FAH Missense_Mutation p.G213A 0.24 deleterious(0.01) probably_damaging(0.947) TCGA-EK-A2PG-01 15 85400594 85400594 G C ALPK3 Silent p.L1077L 0.36 TCGA-EK-A2PG-01 15 85438326 85438326 C T SLC28A1 Missense_Mutation p.H145Y 0.36 tolerated(1) possibly_damaging(0.649) TCGA-EK-A2PG-01 15 85476463 85476463 G A SLC28A1 Missense_Mutation p.E391K 0.45 tolerated(0.46) probably_damaging(0.999) TCGA-EK-A2PG-01 15 90167264 90167264 C T TICRR Silent p.L1241L 0.26 TCGA-EK-A2PG-01 15 90167357 90167357 C T TICRR Silent p.L1272L 0.21 TCGA-EK-A2PG-01 15 90771663 90771663 G C SEMA4B Missense_Mutation p.E768Q 0.54 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 15 90771715 90771715 G T SEMA4B Missense_Mutation p.R785L 0.58 deleterious(0) possibly_damaging(0.644) TCGA-EK-A2PG-01 15 90903722 90903722 C T ZNF774 Missense_Mutation p.S220L 0.31 deleterious(0) probably_damaging(0.941) TCGA-EK-A2PG-01 15 90986629 90986629 G A IQGAP1 Missense_Mutation p.E278K 0.22 tolerated(0.78) benign(0.002) TCGA-EK-A2PG-01 15 90986659 90986659 G A IQGAP1 Missense_Mutation p.E288K 0.20 deleterious(0.01) benign(0.058) TCGA-EK-A2PG-01 15 98981426 98981426 G A FAM169B 3'UTR 0.27 TCGA-EK-A2PG-01 15 99504622 99504622 G C IGF1R 3'UTR 0.31 TCGA-EK-A2PG-01 16 1392015 1392015 G T BAIAP3 Nonsense_Mutation p.E304* 0.28 TCGA-EK-A2PG-01 16 19883813 19883813 C T GPRC5B Missense_Mutation p.E119K 0.29 tolerated(0.24) benign(0.144) TCGA-EK-A2PG-01 16 20818300 20818300 G C AC004381.6 Missense_Mutation p.E9Q 0.48 tolerated_low_confidence(0.09) benign(0.091) TCGA-EK-A2PG-01 16 2213913 2213913 C T TRAF7 5'UTR 0.61 TCGA-EK-A2PG-01 16 2652095 2652095 G C PDPK1 3'UTR 0.39 TCGA-EK-A2PG-01 16 27781220 27781220 C G KIAA0556 Silent p.V1338V 0.53 TCGA-EK-A2PG-01 16 29913117 29913117 G T ASPHD1 Silent p.L275L 0.26 TCGA-EK-A2PG-01 16 3071661 3071661 G A TNFRSF12A Missense_Mutation p.R102K 0.17 tolerated(0.15) benign(0.136) TCGA-EK-A2PG-01 16 31106931 31106931 C G VKORC1 5'Flank 0.33 TCGA-EK-A2PG-01 16 31273048 31273048 G A ITGAM Missense_Mutation p.E22K 0.25 deleterious(0.05) benign(0.072) TCGA-EK-A2PG-01 16 31488810 31488810 C T TGFB1I1 Silent p.F433F 0.44 TCGA-EK-A2PG-01 16 318797 318797 G C ITFG3 Missense_Mutation p.E490D 0.33 tolerated(0.08) benign(0.001) TCGA-EK-A2PG-01 16 3613849 3613849 G C NLRC3 Silent p.L410L 0.30 TCGA-EK-A2PG-01 16 53686744 53686744 C G RPGRIP1L Missense_Mutation p.E619Q 0.35 tolerated(0.15) benign(0.152) TCGA-EK-A2PG-01 16 57787337 57787337 C G KATNB1 Silent p.P361P 0.32 TCGA-EK-A2PG-01 16 57787430 57787430 C T KATNB1 Silent p.I392I 0.38 TCGA-EK-A2PG-01 16 66785177 66785177 G A DYNC1LI2 Silent p.F60F 0.18 TCGA-EK-A2PG-01 16 66788883 66788883 G T CCDC79 Missense_Mutation p.S727Y 0.50 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-EK-A2PG-01 16 67183392 67183392 G A B3GNT9 Missense_Mutation p.H333Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 16 67354689 67354689 G A KCTD19 Missense_Mutation p.P35S 0.08 deleterious(0.01) possibly_damaging(0.737) TCGA-EK-A2PG-01 16 68732099 68732099 G A CDH3 Silent p.L762L 0.49 TCGA-EK-A2PG-01 16 69294158 69294158 G A SNTB2 Missense_Mutation p.E334K 0.24 deleterious(0) possibly_damaging(0.697) TCGA-EK-A2PG-01 16 69727455 69727455 C G NFAT5 Missense_Mutation p.Q1243E 0.09 benign(0.4) TCGA-EK-A2PG-01 16 70917970 70917970 C T HYDIN Missense_Mutation p.G3278R 0.24 probably_damaging(0.991) TCGA-EK-A2PG-01 16 71012846 71012846 C T HYDIN Missense_Mutation p.E1537K 0.15 probably_damaging(0.953) TCGA-EK-A2PG-01 16 72090431 72090431 G A HP Missense_Mutation p.D31N 0.46 deleterious_low_confidence(0.01) benign(0.021) TCGA-EK-A2PG-01 16 75033937 75033937 C T ZNRF1 Missense_Mutation p.S123L 0.11 tolerated(0.61) benign(0.019) TCGA-EK-A2PG-01 16 77756503 77756503 G A NUDT7 Silent p.E8E 0.21 TCGA-EK-A2PG-01 16 83813660 83813660 C A CDH13 Missense_Mutation p.A637D 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2PG-01 16 84600379 84600379 G A COTL1 3'UTR 0.20 TCGA-EK-A2PG-01 16 89212381 89212381 G A ACSF3 Missense_Mutation p.G513S 0.44 deleterious(0.03) probably_damaging(0.948) TCGA-EK-A2PG-01 16 89922026 89922026 C T SPIRE2 Missense_Mutation p.P304S 0.37 deleterious(0) probably_damaging(0.955) TCGA-EK-A2PG-01 16 8993571 8993571 C T USP7 Missense_Mutation p.E785K 0.34 tolerated(0.43) benign(0.002) TCGA-EK-A2PG-01 17 11666898 11666898 C T DNAH9 Silent p.I2379I 0.27 TCGA-EK-A2PG-01 17 16347309 16347309 C A FAM211A Missense_Mutation p.G210C 0.67 tolerated(0.21) probably_damaging(1) TCGA-EK-A2PG-01 17 17088471 17088471 C T MPRIP 3'UTR 0.50 TCGA-EK-A2PG-01 17 19284341 19284341 C G MAPK7 Silent p.L273L 0.33 TCGA-EK-A2PG-01 17 20805926 20805926 C T RP11-344E13.3 RNA 0.38 TCGA-EK-A2PG-01 17 27425864 27425864 C A MYO18A Nonsense_Mutation p.E1254* 0.25 TCGA-EK-A2PG-01 17 30669122 30669122 C G C17orf75 Missense_Mutation p.E13Q 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-EK-A2PG-01 17 33459413 33459413 G A NLE1 3'UTR 0.20 TCGA-EK-A2PG-01 17 34499728 34499728 C A TBC1D3B Missense_Mutation p.M104I 0.16 tolerated(0.08) benign(0.41) TCGA-EK-A2PG-01 17 35605034 35605034 G A ACACA Missense_Mutation p.S737L 0.27 deleterious(0) benign(0.297) TCGA-EK-A2PG-01 17 35766393 35766393 C G ACACA 5'UTR 0.29 TCGA-EK-A2PG-01 17 36882218 36882218 G T MLLT6 3'UTR 0.24 TCGA-EK-A2PG-01 17 37187378 37187378 C A CTD-2206N4.2 5'Flank 0.41 TCGA-EK-A2PG-01 17 37187556 37187556 C G CTD-2206N4.2 5'Flank 0.26 TCGA-EK-A2PG-01 17 37187642 37187642 C G CTD-2206N4.2 5'Flank 0.23 TCGA-EK-A2PG-01 17 38296801 38296801 G C CASC3 5'UTR 0.18 TCGA-EK-A2PG-01 17 38784706 38784706 G T SMARCE1 3'UTR 0.21 TCGA-EK-A2PG-01 17 3920807 3920807 C T ZZEF1 Missense_Mutation p.R2620H 0.61 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 17 39216311 39216311 C G KRTAP2-3 5'UTR 0.18 TCGA-EK-A2PG-01 17 39280025 39280025 C T KRTAP4-12 Missense_Mutation p.R117H 0.15 deleterious(0.03) unknown(0) TCGA-EK-A2PG-01 17 3962500 3962500 G C ZZEF1 Silent p.V1656V 0.18 TCGA-EK-A2PG-01 17 40854472 40854472 G C EZH1 3'UTR 0.14 TCGA-EK-A2PG-01 17 41004444 41004444 G C AOC3 Missense_Mutation p.E362Q 0.26 deleterious(0) probably_damaging(0.991) TCGA-EK-A2PG-01 17 41062954 41062954 C T G6PC Silent p.F195F 0.24 TCGA-EK-A2PG-01 17 41177998 41177998 G C RND2 Missense_Mutation p.E42Q 0.42 deleterious(0) possibly_damaging(0.505) TCGA-EK-A2PG-01 17 41209115 41209115 C T BRCA1 Missense_Mutation p.R1765K 0.17 deleterious(0) benign(0) TCGA-EK-A2PG-01 17 41478083 41478083 C G ARL4D 3'UTR 0.30 TCGA-EK-A2PG-01 17 44249450 44249450 G C KANSL1 Missense_Mutation p.F20L 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-EK-A2PG-01 17 4437146 4437146 A T SPNS2 Missense_Mutation p.M448L 0.36 tolerated(1) benign(0.051) TCGA-EK-A2PG-01 17 45214547 45214547 G C CDC27 Missense_Mutation p.I634M 0.13 deleterious(0.05) possibly_damaging(0.804) TCGA-EK-A2PG-01 17 45219631 45219631 G A CDC27 Nonsense_Mutation p.Q454* 0.30 TCGA-EK-A2PG-01 17 45481351 45481351 G C EFCAB13 Missense_Mutation p.E709Q 0.15 tolerated(0.16) probably_damaging(0.932) TCGA-EK-A2PG-01 17 45699558 45699558 G A NPEPPS 3'UTR 0.22 TCGA-EK-A2PG-01 17 47038294 47038294 C G GIP Missense_Mutation p.E136Q 0.23 deleterious(0.04) possibly_damaging(0.737) TCGA-EK-A2PG-01 17 47236506 47236506 G C B4GALNT2 Silent p.R262R 0.30 TCGA-EK-A2PG-01 17 4805354 4805354 C T CHRNE Missense_Mutation p.D125N 0.43 tolerated(0.06) benign(0.254) TCGA-EK-A2PG-01 17 49710909 49710909 G A CA10 Missense_Mutation p.R298C 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2PG-01 17 61904935 61904935 C T FTSJ3 5'UTR 0.18 TCGA-EK-A2PG-01 17 63648 63648 C T RPH3AL Missense_Mutation p.G315S 0.32 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-EK-A2PG-01 17 65067928 65067928 G T HELZ 3'UTR 0.44 TCGA-EK-A2PG-01 17 685514 685514 C T GLOD4 5'UTR 0.15 TCGA-EK-A2PG-01 17 7132958 7132958 G A DVL2 Silent p.L232L 0.27 TCGA-EK-A2PG-01 17 7133189 7133189 G T DVL2 Silent p.L198L 0.35 TCGA-EK-A2PG-01 17 7147886 7147887 - TGGG CTDNEP1 Frame_Shift_Ins p.M220Pfs*11 0.39 TCGA-EK-A2PG-01 17 73049141 73049141 G A KCTD2 Missense_Mutation p.A161T 0.26 tolerated(0.95) benign(0.042) TCGA-EK-A2PG-01 17 7350871 7350871 C G CHRNB1 Missense_Mutation p.S171C 0.60 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 17 73838662 73838662 C G UNC13D Missense_Mutation p.E141Q 0.18 tolerated(0.38) possibly_damaging(0.694) TCGA-EK-A2PG-01 17 74076903 74076903 C T ZACN Intron 0.47 TCGA-EK-A2PG-01 17 74086476 74086476 G A EXOC7 Missense_Mutation p.H330Y 0.21 tolerated(0.65) benign(0.036) TCGA-EK-A2PG-01 17 74087299 74087299 G A EXOC7 Nonsense_Mutation p.Q276* 0.35 TCGA-EK-A2PG-01 17 74622103 74622103 C T ST6GALNAC1 Missense_Mutation p.R497Q 0.23 probably_damaging(0.999) TCGA-EK-A2PG-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.26 deleterious(0) possibly_damaging(0.9) TCGA-EK-A2PG-01 17 78078917 78078917 C T GAA Missense_Mutation p.R178C 0.17 tolerated(0.12) benign(0.26) TCGA-EK-A2PG-01 17 7819061 7819061 G A CHD3 3'Flank 0.47 TCGA-EK-A2PG-01 17 79152851 79152851 G C AATK-AS1 RNA 0.69 TCGA-EK-A2PG-01 17 79478259 79478259 C T ACTG1 Missense_Mutation p.E253K 0.18 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-EK-A2PG-01 17 79478517 79478517 C T ACTG1 Missense_Mutation p.E167K 0.38 deleterious_low_confidence(0.02) benign(0.139) TCGA-EK-A2PG-01 17 79479015 79479015 C A ACTG1 Nonsense_Mutation p.E93* 0.30 TCGA-EK-A2PG-01 17 79870304 79870304 C G SIRT7 Missense_Mutation p.K397N 0.27 deleterious_low_confidence(0) benign(0.021) TCGA-EK-A2PG-01 17 8736353 8736353 G C PIK3R6 Missense_Mutation p.R219G 0.67 tolerated(0.42) benign(0.185) TCGA-EK-A2PG-01 18 24081043 24081043 C T KCTD1 Missense_Mutation p.E53K 0.34 tolerated(0.07) benign(0.134) TCGA-EK-A2PG-01 18 29867235 29867235 G C GAREM Nonsense_Mutation p.S442* 0.25 TCGA-EK-A2PG-01 18 33077855 33077855 C G INO80C 5'UTR 0.33 TCGA-EK-A2PG-01 18 44268784 44268784 C G ST8SIA5 Missense_Mutation p.S137T 0.30 benign(0.411) TCGA-EK-A2PG-01 18 5415862 5415862 C G EPB41L3 Missense_Mutation p.L674F 0.55 tolerated(0.12) probably_damaging(0.993) TCGA-EK-A2PG-01 18 55155651 55155651 G C ONECUT2 3'UTR 0.55 TCGA-EK-A2PG-01 18 56998762 56998762 C A LMAN1 Nonsense_Mutation p.E462* 0.34 TCGA-EK-A2PG-01 18 57570153 57570153 C T PMAIP1 3'UTR 0.50 TCGA-EK-A2PG-01 18 61027005 61027005 C G KDSR Missense_Mutation p.K73N 0.27 deleterious(0.01) possibly_damaging(0.876) TCGA-EK-A2PG-01 18 71815058 71815058 G A FBXO15 5'UTR 0.29 TCGA-EK-A2PG-01 19 10446644 10446644 C T ICAM3 Missense_Mutation p.E118K 0.19 tolerated(0.08) benign(0.089) TCGA-EK-A2PG-01 19 10472206 10472206 G A TYK2 Silent p.V676V 0.18 TCGA-EK-A2PG-01 19 10557036 10557036 G A PDE4A Missense_Mutation p.D155N 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.805) TCGA-EK-A2PG-01 19 13002100 13002100 C T GCDH 5'UTR 0.30 TCGA-EK-A2PG-01 19 13248327 13248327 G A NACC1 Missense_Mutation p.R421H 0.10 deleterious(0.03) probably_damaging(0.982) TCGA-EK-A2PG-01 19 14521880 14521880 G A DDX39A Silent p.L178L 0.08 TCGA-EK-A2PG-01 19 14705483 14705483 G A CLEC17A Missense_Mutation p.R117Q 0.22 tolerated(0.61) benign(0.002) TCGA-EK-A2PG-01 19 15537963 15537963 C T WIZ Missense_Mutation p.R304Q 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-EK-A2PG-01 19 15905062 15905062 C T OR10H5 Silent p.I68I 0.08 TCGA-EK-A2PG-01 19 16472569 16472569 G A EPS15L1 Intron 0.27 TCGA-EK-A2PG-01 19 18085015 18085015 C T KCNN1 Silent p.L106L 0.07 TCGA-EK-A2PG-01 19 18391505 18391505 C A JUND Missense_Mutation p.D264Y 0.54 deleterious(0) possibly_damaging(0.76) TCGA-EK-A2PG-01 19 19414722 19414722 C G SUGP1 Intron 0.54 TCGA-EK-A2PG-01 19 32843799 32843799 G A ZNF507 Silent p.L21L 0.16 TCGA-EK-A2PG-01 19 35170801 35170801 G C ZNF302 Intron 0.15 TCGA-EK-A2PG-01 19 36109886 36109886 C T HAUS5 Missense_Mutation p.R372W 0.14 deleterious(0) probably_damaging(0.96) TCGA-EK-A2PG-01 19 36212558 36212558 C T KMT2B Missense_Mutation p.P770L 0.12 benign(0.059) TCGA-EK-A2PG-01 19 37619729 37619729 G C ZNF420 Missense_Mutation p.E612D 0.53 deleterious(0.01) benign(0.173) TCGA-EK-A2PG-01 19 38572047 38572047 G A SIPA1L3 5'UTR 0.21 TCGA-EK-A2PG-01 19 38979846 38979846 G A RYR1 Silent p.V1859V 0.36 TCGA-EK-A2PG-01 19 39096370 39096370 G A MAP4K1 Missense_Mutation p.P401S 0.17 tolerated(0.21) benign(0.045) TCGA-EK-A2PG-01 19 3959554 3959554 C T DAPK3 Missense_Mutation p.E304K 0.43 deleterious(0.05) possibly_damaging(0.529) TCGA-EK-A2PG-01 19 40224976 40224976 G A CLC Nonsense_Mutation p.Q84* 0.29 TCGA-EK-A2PG-01 19 40554664 40554664 G C ZNF780B Missense_Mutation p.Q17E 0.21 deleterious(0.03) benign(0.149) TCGA-EK-A2PG-01 19 40827746 40827746 G A C19orf47 3'UTR 0.31 TCGA-EK-A2PG-01 19 40895581 40895581 C T HIPK4 Missense_Mutation p.E77K 0.42 deleterious(0) benign(0.3) TCGA-EK-A2PG-01 19 42600013 42600013 G A POU2F2 Silent p.F244F 0.13 TCGA-EK-A2PG-01 19 42752793 42752793 C T ERF Missense_Mutation p.D491N 0.14 deleterious(0) possibly_damaging(0.811) TCGA-EK-A2PG-01 19 44129384 44129384 C T CADM4 Nonsense_Mutation p.W258* 0.31 TCGA-EK-A2PG-01 19 4525824 4525824 C T PLIN5 Missense_Mutation p.E181K 0.13 deleterious(0.04) possibly_damaging(0.673) TCGA-EK-A2PG-01 19 45822923 45822923 C G CKM Missense_Mutation p.E17Q 0.20 tolerated(0.14) benign(0.009) TCGA-EK-A2PG-01 19 47261273 47261273 G A FKRP 3'UTR 0.20 TCGA-EK-A2PG-01 19 48619186 48619186 G A LIG1 Missense_Mutation p.R874W 0.46 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 19 49090586 49090586 G C SULT2B1 Missense_Mutation p.E105D 0.17 deleterious(0.02) possibly_damaging(0.814) TCGA-EK-A2PG-01 19 49133018 49133018 G A SPHK2 Silent p.G651G 0.18 TCGA-EK-A2PG-01 19 50390972 50390972 C T TBC1D17 Intron 0.38 TCGA-EK-A2PG-01 19 54377813 54377813 C T MYADM 3'UTR 0.19 TCGA-EK-A2PG-01 19 5455848 5455848 C T ZNRF4 Silent p.L116L 0.28 TCGA-EK-A2PG-01 19 54723752 54723752 G C LILRB3 Intron 0.31 TCGA-EK-A2PG-01 19 55086305 55086305 C T LILRA2 Silent p.L154L 0.41 TCGA-EK-A2PG-01 19 55378121 55378121 G A KIR3DL2 Missense_Mutation p.E435K 0.50 tolerated(0.1) benign(0.014) TCGA-EK-A2PG-01 19 55593878 55593878 G A EPS8L1 Silent p.L374L 0.17 TCGA-EK-A2PG-01 19 55677347 55677347 G A DNAAF3 Missense_Mutation p.S104F 0.19 tolerated(0.06) benign(0.103) TCGA-EK-A2PG-01 19 57085849 57085849 G C ZNF470 Missense_Mutation p.K49N 0.07 deleterious(0) benign(0.438) TCGA-EK-A2PG-01 19 57088790 57088790 G A ZNF470 Silent p.Q331Q 0.17 TCGA-EK-A2PG-01 19 58063842 58063842 G A ZNF550 Intron 0.07 TCGA-EK-A2PG-01 19 58326200 58326200 C T ZNF552 5'UTR 0.20 TCGA-EK-A2PG-01 19 59056853 59056853 C A TRIM28 Missense_Mutation p.F134L 0.23 tolerated(0.08) probably_damaging(0.935) TCGA-EK-A2PG-01 19 727627 727627 G A PALM Missense_Mutation p.E68K 0.14 deleterious(0.02) benign(0.12) TCGA-EK-A2PG-01 19 7595300 7595300 C T MCOLN1 Silent p.L496L 0.35 TCGA-EK-A2PG-01 19 7595360 7595360 C G MCOLN1 Silent p.L516L 0.42 TCGA-EK-A2PG-01 19 872088 872088 G A MED16 Silent p.L646L 0.35 TCGA-EK-A2PG-01 1 100615052 100615052 G A TRMT13 3'UTR 0.14 TCGA-EK-A2PG-01 1 101188842 101188842 G C VCAM1 Missense_Mutation p.E203Q 0.26 tolerated(0.07) benign(0.012) TCGA-EK-A2PG-01 1 109815025 109815025 G A CELSR2 Silent p.L2684L 0.38 TCGA-EK-A2PG-01 1 109815538 109815538 G A CELSR2 Missense_Mutation p.E2743K 0.32 tolerated(0.22) probably_damaging(0.968) TCGA-EK-A2PG-01 1 109852489 109852489 C T SORT1 3'UTR 0.21 TCGA-EK-A2PG-01 1 110173305 110173305 G C AMPD2 Missense_Mutation p.E774Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 1 110212136 110212136 G A GSTM2 Silent p.E101E 0.10 TCGA-EK-A2PG-01 1 114940291 114940291 C G TRIM33 Missense_Mutation p.E1121D 0.35 tolerated(0.31) benign(0.009) TCGA-EK-A2PG-01 1 117695881 117695881 C T VTCN1 Missense_Mutation p.D186N 0.16 tolerated(0.16) benign(0.029) TCGA-EK-A2PG-01 1 119964551 119964551 G C HSD3B2 Missense_Mutation p.E143Q 0.17 deleterious(0.04) benign(0.018) TCGA-EK-A2PG-01 1 12921152 12921152 C T PRAMEF2 Nonsense_Mutation p.Q315* 0.22 TCGA-EK-A2PG-01 1 13669173 13669173 C T PRAMEF14 Missense_Mutation p.R386K 0.20 deleterious(0) benign(0.023) TCGA-EK-A2PG-01 1 145304567 145304567 C T NBPF10 Silent p.I500I 0.07 TCGA-EK-A2PG-01 1 145304608 145304608 C G NBPF10 Nonsense_Mutation p.S514* 0.06 TCGA-EK-A2PG-01 1 148252781 148252781 C G NBPF20 Missense_Mutation p.R4524T 0.15 probably_damaging(0.989) TCGA-EK-A2PG-01 1 148343671 148343671 G A NBPF20 Missense_Mutation p.S139F 0.13 possibly_damaging(0.496) TCGA-EK-A2PG-01 1 149754593 149754593 G C HIST2H2BF 3'UTR 0.58 TCGA-EK-A2PG-01 1 150235217 150235217 G C CA14 Missense_Mutation p.K170N 0.26 tolerated(0.34) benign(0.197) TCGA-EK-A2PG-01 1 150237051 150237051 G A CA14 Missense_Mutation p.E336K 0.45 deleterious(0.01) benign(0.036) TCGA-EK-A2PG-01 1 152278472 152278472 C T FLG Missense_Mutation p.A2964T 0.33 benign(0.01) TCGA-EK-A2PG-01 1 153750818 153750818 C A SLC27A3 Missense_Mutation p.S495Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 1 154317602 154317602 C T ATP8B2 Silent p.D847D 0.24 TCGA-EK-A2PG-01 1 154426969 154426969 G C IL6R Missense_Mutation p.D358H 0.39 tolerated(0.07) benign(0.048) TCGA-EK-A2PG-01 1 154427027 154427027 G A IL6R Missense_Mutation p.G377E 0.35 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 1 156238112 156238112 C T SMG5 Missense_Mutation p.E270K 0.18 deleterious(0.01) benign(0.015) TCGA-EK-A2PG-01 1 156897387 156897387 C G LRRC71 Silent p.L254L 0.16 TCGA-EK-A2PG-01 1 158990292 158990292 G C IFI16 Silent p.L378L 0.38 TCGA-EK-A2PG-01 1 160171065 160171065 G A CASQ1 Missense_Mutation p.E364K 0.31 tolerated(0.16) benign(0.058) TCGA-EK-A2PG-01 1 160322992 160322992 C T NCSTN Missense_Mutation p.P382S 0.18 deleterious(0) probably_damaging(0.987) TCGA-EK-A2PG-01 1 162569088 162569088 G A UAP1 Missense_Mutation p.E485K 0.20 tolerated(0.33) benign(0.331) TCGA-EK-A2PG-01 1 162745581 162745581 C A DDR2 Missense_Mutation p.L666I 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-EK-A2PG-01 1 167663477 167663477 G A RCSD1 Missense_Mutation p.E138K 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EK-A2PG-01 1 169509975 169509975 G T F5 Silent p.L1451L 0.30 TCGA-EK-A2PG-01 1 170001044 170001044 T C KIFAP3 Missense_Mutation p.Q275R 0.84 deleterious(0.02) probably_damaging(1) TCGA-EK-A2PG-01 1 172560172 172560172 C T SUCO Silent p.I958I 0.42 TCGA-EK-A2PG-01 1 17279959 17279959 G C CROCC Missense_Mutation p.E1057Q 0.17 probably_damaging(0.962) TCGA-EK-A2PG-01 1 180017795 180017795 G A CEP350 Missense_Mutation p.D1583N 0.43 probably_damaging(0.957) TCGA-EK-A2PG-01 1 181059519 181059519 G T IER5 3'UTR 0.17 TCGA-EK-A2PG-01 1 182845989 182845989 G A DHX9 Missense_Mutation p.E717K 0.38 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 1 19524208 19524208 G A UBR4 Silent p.F283F 0.16 TCGA-EK-A2PG-01 1 19524215 19524215 G A UBR4 Missense_Mutation p.S281F 0.22 possibly_damaging(0.86) TCGA-EK-A2PG-01 1 1961453 1961453 C T GABRD Missense_Mutation p.S364F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 1 1961472 1961472 C T GABRD Silent p.V370V 0.32 TCGA-EK-A2PG-01 1 196965170 196965170 G A CFHR5 Missense_Mutation p.G270E 0.23 tolerated(0.09) benign(0.114) TCGA-EK-A2PG-01 1 19923492 19923492 G C MINOS1-NBL1 5'UTR 0.25 TCGA-EK-A2PG-01 1 200376337 200376337 G C ZNF281 Missense_Mutation p.Q833E 0.10 deleterious(0) probably_damaging(0.952) TCGA-EK-A2PG-01 1 200974481 200974481 G A KIF21B Silent p.F229F 0.33 TCGA-EK-A2PG-01 1 201749672 201749672 G A NAV1 Silent p.R450R 0.13 TCGA-EK-A2PG-01 1 20440630 20440630 G A PLA2G2D Missense_Mutation p.R139W 0.24 deleterious(0) possibly_damaging(0.624) TCGA-EK-A2PG-01 1 20490647 20490647 C A PLA2G2C Missense_Mutation p.G96V 0.33 tolerated(0.16) benign(0.34) TCGA-EK-A2PG-01 1 204970376 204970376 T C NFASC Missense_Mutation p.F1033S 0.37 tolerated(0.4) unknown(0) TCGA-EK-A2PG-01 1 207307836 207307836 A G C4BPA Missense_Mutation p.Y391C 0.48 deleterious(0.01) probably_damaging(0.961) TCGA-EK-A2PG-01 1 207697084 207697084 G C CR1 Missense_Mutation p.E206Q 0.19 tolerated(0.45) benign(0.31) TCGA-EK-A2PG-01 1 207871117 207871117 G A CR1L Silent p.V347V 0.23 TCGA-EK-A2PG-01 1 20977185 20977185 T A PINK1 3'UTR 0.69 TCGA-EK-A2PG-01 1 209807944 209807944 C T LAMB3 Missense_Mutation p.D138N 0.13 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 1 223537304 223537304 C A SUSD4 5'UTR 0.15 TCGA-EK-A2PG-01 1 228494860 228494860 C T OBSCN Missense_Mutation p.S5019F 0.18 possibly_damaging(0.573) TCGA-EK-A2PG-01 1 229729879 229729879 C T TAF5L 3'UTR 0.33 TCGA-EK-A2PG-01 1 23670749 23670749 G C HNRNPR 5'UTR 0.33 TCGA-EK-A2PG-01 1 23759693 23759693 C G ASAP3 Missense_Mutation p.E734Q 0.34 tolerated(0.08) probably_damaging(0.999) TCGA-EK-A2PG-01 1 23760772 23760772 C T ASAP3 Silent p.L642L 0.25 TCGA-EK-A2PG-01 1 237947390 237947390 G A RYR2 Silent p.L4126L 0.27 TCGA-EK-A2PG-01 1 23848447 23848447 C T E2F2 Missense_Mutation p.D154N 0.17 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 1 24078240 24078240 G A TCEB3 Missense_Mutation p.R408K 0.22 tolerated(0.72) benign(0.002) TCGA-EK-A2PG-01 1 24078346 24078346 G A TCEB3 Silent p.R443R 0.29 TCGA-EK-A2PG-01 1 24078361 24078361 G C TCEB3 Missense_Mutation p.K448N 0.43 deleterious(0) probably_damaging(0.992) TCGA-EK-A2PG-01 1 24113777 24113777 G A PITHD1 Missense_Mutation p.E183K 0.20 tolerated(0.23) benign(0.035) TCGA-EK-A2PG-01 1 244218891 244218891 G C ZBTB18 3'UTR 0.27 TCGA-EK-A2PG-01 1 247752384 247752384 C T OR2G2 Silent p.F241F 0.33 TCGA-EK-A2PG-01 1 248129394 248129394 C G OR2AK2 Missense_Mutation p.S254C 0.31 deleterious(0.03) possibly_damaging(0.582) TCGA-EK-A2PG-01 1 248309150 248309150 G A OR2M5 Missense_Mutation p.R234H 0.31 tolerated(0.11) benign(0.013) TCGA-EK-A2PG-01 1 248569550 248569550 C T OR2T1 Silent p.F85F 0.19 TCGA-EK-A2PG-01 1 32196711 32196711 C T BAI2 Missense_Mutation p.R1357Q 0.16 tolerated(0.08) benign(0.187) TCGA-EK-A2PG-01 1 33245004 33245004 C G YARS Missense_Mutation p.K485N 0.17 deleterious(0.03) probably_damaging(0.91) TCGA-EK-A2PG-01 1 35454317 35454317 A C ZMYM6 Missense_Mutation p.L789W 0.31 deleterious(0) probably_damaging(0.989) TCGA-EK-A2PG-01 1 36023765 36023765 C G NCDN 5'UTR 0.20 TCGA-EK-A2PG-01 1 38351461 38351461 G A INPP5B Missense_Mutation p.H390Y 0.47 tolerated(0.06) probably_damaging(0.945) TCGA-EK-A2PG-01 1 39361710 39361710 G C RHBDL2 Silent p.L180L 0.15 TCGA-EK-A2PG-01 1 39384655 39384655 G C RHBDL2 Missense_Mutation p.S77C 0.21 tolerated(0.12) benign(0.002) TCGA-EK-A2PG-01 1 40539719 40539719 G A PPT1 3'UTR 0.22 TCGA-EK-A2PG-01 1 46086631 46086631 G A CCDC17 Missense_Mutation p.R515W 0.24 deleterious(0) probably_damaging(0.995) TCGA-EK-A2PG-01 1 47610594 47610594 G C CYP4A22 Missense_Mutation p.E392Q 0.19 tolerated(0.48) benign(0.158) TCGA-EK-A2PG-01 1 52850273 52850273 G C ORC1 Silent p.V568V 0.24 TCGA-EK-A2PG-01 1 54649831 54649831 G C CYB5RL Intron 0.14 TCGA-EK-A2PG-01 1 56960519 56960519 A G PPAP2B 3'UTR 0.88 TCGA-EK-A2PG-01 1 59165694 59165694 C T MYSM1 Missense_Mutation p.E11K 0.20 deleterious(0) possibly_damaging(0.814) TCGA-EK-A2PG-01 1 62190936 62190936 G A TM2D1 Missense_Mutation p.H15Y 0.36 unknown(0) TCGA-EK-A2PG-01 1 6512126 6512126 G C ESPN Missense_Mutation p.K765N 0.17 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 1 67425385 67425385 G A MIER1 Missense_Mutation p.E220K 0.12 deleterious(0.04) possibly_damaging(0.573) TCGA-EK-A2PG-01 1 8030977 8030977 G A PARK7 Silent p.L92L 0.15 TCGA-EK-A2PG-01 1 9011498 9011498 C A CA6 Intron 0.27 TCGA-EK-A2PG-01 1 92441988 92441988 C T BRDT Missense_Mutation p.A204V 0.27 tolerated(1) benign(0) TCGA-EK-A2PG-01 1 92846426 92846426 G C RPAP2 Missense_Mutation p.E612Q 0.12 deleterious_low_confidence(0) benign(0.001) TCGA-EK-A2PG-01 1 9416573 9416573 A G SPSB1 Missense_Mutation p.K208R 0.47 tolerated(0.17) benign(0.038) TCGA-EK-A2PG-01 20 10603872 10603872 G A SLX4IP Missense_Mutation p.E358K 0.15 tolerated(0.09) possibly_damaging(0.526) TCGA-EK-A2PG-01 20 1275602 1275602 G C SNPH Intron 0.10 TCGA-EK-A2PG-01 20 17596576 17596576 C G RRBP1 Missense_Mutation p.E883Q 0.13 tolerated(0.21) possibly_damaging(0.607) TCGA-EK-A2PG-01 20 17922931 17922931 T C SNX5 3'UTR 0.15 TCGA-EK-A2PG-01 20 23476465 23476465 C T CST8 Intron 0.15 TCGA-EK-A2PG-01 20 23804665 23804665 C T CST2 Missense_Mutation p.E140K 0.11 tolerated(0.65) benign(0.009) TCGA-EK-A2PG-01 20 24959457 24959457 C T APMAP Missense_Mutation p.E92K 0.15 tolerated(0.26) benign(0.004) TCGA-EK-A2PG-01 20 30605646 30605646 C T CCM2L Missense_Mutation p.S81F 0.13 deleterious(0) probably_damaging(0.994) TCGA-EK-A2PG-01 20 3145076 3145076 C T LZTS3 3'UTR 0.15 TCGA-EK-A2PG-01 20 31680335 31680335 G A BPIFB4 Silent p.P405P 0.20 TCGA-EK-A2PG-01 20 31789380 31789380 G C BPIFA4P RNA 0.19 TCGA-EK-A2PG-01 20 32661383 32661383 G A RALY Missense_Mutation p.G91R 0.11 deleterious(0) probably_damaging(0.997) TCGA-EK-A2PG-01 20 33122637 33122637 T G DYNLRB1 Intron 0.93 TCGA-EK-A2PG-01 20 33440300 33440300 G A GGT7 Missense_Mutation p.S454F 0.18 deleterious(0) probably_damaging(0.966) TCGA-EK-A2PG-01 20 36641799 36641799 C T TTI1 Silent p.L140L 0.17 TCGA-EK-A2PG-01 20 36766609 36766609 G C TGM2 Silent p.L507L 0.12 TCGA-EK-A2PG-01 20 3677876 3677876 G A SIGLEC1 Nonsense_Mutation p.R746* 0.10 TCGA-EK-A2PG-01 20 377073 377073 G C TRIB3 Missense_Mutation p.K272N 0.13 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 20 40713386 40713386 G A PTPRT Nonsense_Mutation p.R1358* 0.13 TCGA-EK-A2PG-01 20 41400179 41400179 G A PTPRT Missense_Mutation p.H194Y 0.64 deleterious(0) probably_damaging(0.942) TCGA-EK-A2PG-01 20 42090207 42090207 G C SRSF6 3'UTR 0.07 TCGA-EK-A2PG-01 20 42090389 42090389 G C SRSF6 3'UTR 0.13 TCGA-EK-A2PG-01 20 42907817 42907817 C A GDAP1L1 Silent p.I327I 0.16 TCGA-EK-A2PG-01 20 42907862 42907862 C T GDAP1L1 Silent p.F342F 0.24 TCGA-EK-A2PG-01 20 42907877 42907877 C G GDAP1L1 Silent p.L347L 0.24 TCGA-EK-A2PG-01 20 42908023 42908023 C G GDAP1L1 3'UTR 0.27 TCGA-EK-A2PG-01 20 43995845 43995845 G C SYS1 3'UTR 0.19 TCGA-EK-A2PG-01 20 44424004 44424004 G A DNTTIP1 Silent p.L98L 0.16 TCGA-EK-A2PG-01 20 44994821 44994821 C G ELMO2 3'UTR 0.08 TCGA-EK-A2PG-01 20 46331391 46331391 C T SULF2 Missense_Mutation p.E147K 0.18 tolerated(0.07) probably_damaging(0.999) TCGA-EK-A2PG-01 20 47691377 47691377 G C CSE1L Missense_Mutation p.L374F 0.13 deleterious(0) probably_damaging(0.97) TCGA-EK-A2PG-01 20 48522082 48522082 G A SPATA2 3'UTR 0.10 TCGA-EK-A2PG-01 20 50705004 50705004 C T ZFP64 Silent p.P188P 0.15 TCGA-EK-A2PG-01 20 55012265 55012265 G A CASS4 Missense_Mutation p.D28N 0.56 deleterious(0) probably_damaging(0.956) TCGA-EK-A2PG-01 20 55214001 55214001 G C TFAP2C 3'UTR 0.50 TCGA-EK-A2PG-01 20 57019856 57019856 C T VAPB 3'UTR 0.58 TCGA-EK-A2PG-01 20 62198726 62198726 G A HELZ2 Missense_Mutation p.S662F 0.14 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 20 62562981 62562981 C T DNAJC5 3'UTR 0.55 TCGA-EK-A2PG-01 20 9561029 9561029 C T PAK7 Silent p.A251A 0.10 TCGA-EK-A2PG-01 21 30391662 30391662 G A RWDD2B 5'UTR 0.60 TCGA-EK-A2PG-01 21 30439221 30439221 G C CCT8 Missense_Mutation p.Q185E 0.14 tolerated(1) benign(0.005) TCGA-EK-A2PG-01 21 34106610 34106610 C T PAXBP1 3'UTR 0.28 TCGA-EK-A2PG-01 21 34106611 34106611 C A PAXBP1 3'UTR 0.28 TCGA-EK-A2PG-01 21 34883749 34883749 C T GART Silent p.R708R 0.19 TCGA-EK-A2PG-01 21 35201969 35201969 G A ITSN1 Missense_Mutation p.E1091K 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-EK-A2PG-01 21 40641950 40641950 C T BRWD1 Missense_Mutation p.D469N 0.31 deleterious(0.03) probably_damaging(0.995) TCGA-EK-A2PG-01 21 45547964 45547964 C G PWP2 Silent p.L764L 0.26 TCGA-EK-A2PG-01 21 45970674 45970674 G C KRTAP10-2 Missense_Mutation p.S223C 0.18 deleterious(0.02) unknown(0) TCGA-EK-A2PG-01 22 18894274 18894274 C G DGCR6 Intron 0.29 TCGA-EK-A2PG-01 22 24126482 24126482 C G MMP11 3'UTR 0.43 TCGA-EK-A2PG-01 22 26860208 26860208 C T HPS4 Missense_Mutation p.R463K 0.15 tolerated(0.33) benign(0.228) TCGA-EK-A2PG-01 22 26937096 26937096 G T TPST2 Silent p.V167V 0.20 TCGA-EK-A2PG-01 22 27068213 27068213 C T MIAT RNA 0.29 TCGA-EK-A2PG-01 22 29956795 29956795 G C NIPSNAP1 Missense_Mutation p.Q212E 0.16 deleterious(0) possibly_damaging(0.879) TCGA-EK-A2PG-01 22 30639682 30639682 C T LIF Silent p.G189G 0.16 TCGA-EK-A2PG-01 22 31032418 31032418 C A SLC35E4 5'UTR 0.14 TCGA-EK-A2PG-01 22 38993310 38993310 C A FAM227A Missense_Mutation p.M472I 0.08 tolerated(0.17) possibly_damaging(0.511) TCGA-EK-A2PG-01 22 39078412 39078412 G C TOMM22 Missense_Mutation p.D68H 0.20 deleterious(0.03) benign(0.109) TCGA-EK-A2PG-01 22 39445549 39445549 C T APOBEC3F Missense_Mutation p.S229L 0.24 deleterious(0.01) benign(0.038) TCGA-EK-A2PG-01 22 39445552 39445552 C T APOBEC3F Missense_Mutation p.P230L 0.24 tolerated(0.26) benign(0.027) TCGA-EK-A2PG-01 22 40801689 40801689 G A SGSM3 Missense_Mutation p.D219N 0.50 tolerated(0.11) benign(0.25) TCGA-EK-A2PG-01 22 47089360 47089360 C T CERK Missense_Mutation p.E364K 0.50 tolerated(0.15) benign(0.016) TCGA-EK-A2PG-01 22 47095335 47095335 G C CERK Nonsense_Mutation p.S273* 0.06 TCGA-EK-A2PG-01 22 47857398 47857398 C G LL22NC03-75H12.2 3'UTR 0.20 TCGA-EK-A2PG-01 2 100925654 100925654 G A LONRF2 Missense_Mutation p.A238V 0.26 tolerated(0.08) probably_damaging(0.916) TCGA-EK-A2PG-01 2 10263582 10263582 C T RRM2 Silent p.V141V 0.23 TCGA-EK-A2PG-01 2 110881535 110881535 C G NPHP1 Missense_Mutation p.E679Q 0.30 tolerated(0.11) probably_damaging(0.999) TCGA-EK-A2PG-01 2 113333262 113333262 G A POLR1B Missense_Mutation p.E1122K 0.25 deleterious(0) probably_damaging(0.991) TCGA-EK-A2PG-01 2 128238691 128238691 C T IWS1 Missense_Mutation p.D797N 0.31 deleterious(0.03) benign(0.064) TCGA-EK-A2PG-01 2 130899945 130899945 G A CCDC74B Missense_Mutation p.S102L 0.11 deleterious(0.04) benign(0.168) TCGA-EK-A2PG-01 2 133887672 133887672 C T NCKAP5 Silent p.L73L 0.55 TCGA-EK-A2PG-01 2 136626216 136626216 C T MCM6 Missense_Mutation p.D194N 0.18 tolerated(0.24) benign(0.049) TCGA-EK-A2PG-01 2 145275290 145275290 G A ZEB2 Intron 0.40 TCGA-EK-A2PG-01 2 152507262 152507262 C G NEB Missense_Mutation p.E2351D 0.18 possibly_damaging(0.884) TCGA-EK-A2PG-01 2 155555258 155555258 G A KCNJ3 5'UTR 0.21 TCGA-EK-A2PG-01 2 167055379 167055379 C T SCN9A Missense_Mutation p.D1913N 0.31 tolerated(0.31) benign(0.002) TCGA-EK-A2PG-01 2 16740741 16740741 G A FAM49A Missense_Mutation p.T275I 0.33 tolerated(0.06) benign(0.367) TCGA-EK-A2PG-01 2 169847359 169847359 G C ABCB11 Nonsense_Mutation p.S287* 0.36 TCGA-EK-A2PG-01 2 170063588 170063588 C A LRP2 Missense_Mutation p.K2214N 0.32 probably_damaging(0.999) TCGA-EK-A2PG-01 2 170349383 170349383 G A BBS5 Splice_Site p.X129_splice 0.53 TCGA-EK-A2PG-01 2 177017826 177017826 G A HOXD4 3'UTR 0.21 TCGA-EK-A2PG-01 2 179462437 179462437 G C TTN Silent p.V19124V 0.23 TCGA-EK-A2PG-01 2 179481293 179481293 A C TTN Silent p.T16075T 0.10 TCGA-EK-A2PG-01 2 179481857 179481857 G A TTN Silent p.D15955D 0.82 TCGA-EK-A2PG-01 2 179481956 179481956 G A TTN Silent p.T15922T 0.30 TCGA-EK-A2PG-01 2 183105003 183105003 C G PDE1A Missense_Mutation p.E78Q 0.54 deleterious(0.03) possibly_damaging(0.806) TCGA-EK-A2PG-01 2 189904256 189904256 G A COL5A2 Missense_Mutation p.P1223S 0.37 unknown(0) TCGA-EK-A2PG-01 2 192227049 192227049 G A MYO1B Silent p.S239S 0.82 TCGA-EK-A2PG-01 2 198571760 198571760 C T MARS2 Missense_Mutation p.S544L 0.58 tolerated(0.19) benign(0.017) TCGA-EK-A2PG-01 2 201305383 201305383 G C SPATS2L Missense_Mutation p.E222Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 2 201726555 201726555 C G CLK1 Missense_Mutation p.D53H 0.31 deleterious_low_confidence(0.02) benign(0.02) TCGA-EK-A2PG-01 2 210558119 210558119 G C MAP2 Missense_Mutation p.E409Q 0.38 deleterious_low_confidence(0.02) benign(0.063) TCGA-EK-A2PG-01 2 210968836 210968836 C T KANSL1L Missense_Mutation p.E474K 0.33 deleterious(0) probably_damaging(0.963) TCGA-EK-A2PG-01 2 220072422 220072422 G T ZFAND2B Missense_Mutation p.R68I 0.37 deleterious(0) probably_damaging(0.996) TCGA-EK-A2PG-01 2 232577696 232577696 C T PTMA 3'UTR 0.13 TCGA-EK-A2PG-01 2 233350575 233350575 C G ECEL1 Intron 0.62 TCGA-EK-A2PG-01 2 234204209 234204209 G A ATG16L1 3'UTR 0.25 TCGA-EK-A2PG-01 2 239757039 239757039 C G TWIST2 Missense_Mutation p.F61L 0.35 tolerated(0.33) benign(0.002) TCGA-EK-A2PG-01 2 241402919 241402919 G T GPC1 Missense_Mutation p.R291S 0.26 deleterious(0.04) benign(0.217) TCGA-EK-A2PG-01 2 24247121 24247121 C T MFSD2B Silent p.S490S 0.43 TCGA-EK-A2PG-01 2 25469057 25469057 G A DNMT3A Silent p.V467V 0.20 TCGA-EK-A2PG-01 2 27424683 27424683 G C SLC5A6 Silent p.V465V 0.16 TCGA-EK-A2PG-01 2 27459279 27459279 G C CAD Missense_Mutation p.G1401A 0.33 tolerated(0.07) possibly_damaging(0.597) TCGA-EK-A2PG-01 2 27547302 27547302 C T MPV17 5'Flank 0.26 TCGA-EK-A2PG-01 2 27547338 27547338 C G MPV17 5'Flank 0.29 TCGA-EK-A2PG-01 2 27663526 27663526 C G NRBP1 Missense_Mutation p.Q384E 0.21 tolerated(0.75) probably_damaging(0.977) TCGA-EK-A2PG-01 2 39477469 39477469 C T MAP4K3 3'UTR 0.18 TCGA-EK-A2PG-01 2 43452520 43452520 C G ZFP36L2 Missense_Mutation p.Q141H 0.29 tolerated(0.11) possibly_damaging(0.588) TCGA-EK-A2PG-01 2 44175581 44175581 C T LRPPRC Silent p.L604L 0.30 TCGA-EK-A2PG-01 2 44175607 44175607 C G LRPPRC Missense_Mutation p.E596Q 0.40 tolerated(0.17) possibly_damaging(0.742) TCGA-EK-A2PG-01 2 44177733 44177733 C G LRPPRC Missense_Mutation p.M552I 0.39 tolerated(0.19) benign(0.01) TCGA-EK-A2PG-01 2 44459672 44459672 C T PPM1B 3'Flank 0.22 TCGA-EK-A2PG-01 2 54482100 54482100 C T TSPYL6 Missense_Mutation p.E397K 0.33 tolerated(0.06) possibly_damaging(0.788) TCGA-EK-A2PG-01 2 67637329 67637329 G A ETAA1 3'UTR 0.37 TCGA-EK-A2PG-01 2 70377147 70377147 G A C2orf42 3'UTR 0.15 TCGA-EK-A2PG-01 2 74273966 74273966 C A TET3 Missense_Mutation p.L173M 0.41 deleterious(0.05) probably_damaging(0.949) TCGA-EK-A2PG-01 2 77749270 77749270 C T LRRTM4 5'UTR 0.28 TCGA-EK-A2PG-01 2 85549569 85549569 G A TGOLN2 3'UTR 0.11 TCGA-EK-A2PG-01 2 86265930 86265930 C T POLR1A Silent p.Q1309Q 0.16 TCGA-EK-A2PG-01 2 86266480 86266480 C T POLR1A Silent p.K1282K 0.17 TCGA-EK-A2PG-01 2 86408434 86408434 G A IMMT Missense_Mutation p.S36L 0.26 deleterious(0.02) benign(0.14) TCGA-EK-A2PG-01 2 86426610 86426610 G C MRPL35 5'UTR 0.10 TCGA-EK-A2PG-01 2 88857388 88857388 C G EIF2AK3 Missense_Mutation p.E1073Q 0.36 tolerated(0.19) benign(0.046) TCGA-EK-A2PG-01 2 9667992 9667992 G A ADAM17 Missense_Mutation p.P181L 0.17 deleterious(0) benign(0.236) TCGA-EK-A2PG-01 2 9667999 9667999 G A ADAM17 Nonsense_Mutation p.Q179* 0.17 TCGA-EK-A2PG-01 2 9668007 9668007 G A ADAM17 Missense_Mutation p.S176L 0.17 deleterious(0.03) possibly_damaging(0.811) TCGA-EK-A2PG-01 2 98421889 98421889 C G TMEM131 Missense_Mutation p.G745A 0.42 tolerated(0.28) benign(0.015) TCGA-EK-A2PG-01 3 10011415 10011415 G A EMC3 Silent p.N215N 0.41 TCGA-EK-A2PG-01 3 101044797 101044797 C T SENP7 Missense_Mutation p.S1048N 0.23 tolerated(0.06) benign(0.029) TCGA-EK-A2PG-01 3 10322155 10322155 A C TATDN2 3'UTR 0.27 TCGA-EK-A2PG-01 3 10377945 10377945 G A ATP2B2 Intron 0.39 TCGA-EK-A2PG-01 3 107941091 107941091 C T IFT57 Missense_Mutation p.E27K 0.12 tolerated_low_confidence(0.21) benign(0.002) TCGA-EK-A2PG-01 3 108813772 108813772 C G MORC1 Silent p.V189V 0.34 TCGA-EK-A2PG-01 3 111845843 111845843 G A GCSAM Nonsense_Mutation p.Q63* 0.22 TCGA-EK-A2PG-01 3 118935061 118935061 G A B4GALT4 Intron 0.09 TCGA-EK-A2PG-01 3 119325689 119325689 G A PLA1A Missense_Mutation p.D48N 0.25 tolerated(1) benign(0.001) TCGA-EK-A2PG-01 3 121208086 121208086 G C POLQ Nonsense_Mutation p.S1231* 0.13 TCGA-EK-A2PG-01 3 121240856 121240856 G C POLQ Missense_Mutation p.H417D 0.31 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 3 122269447 122269447 T A PARP9 Missense_Mutation p.D472V 0.17 deleterious(0) possibly_damaging(0.563) TCGA-EK-A2PG-01 3 12458466 12458466 G A PPARG Silent p.L361L 0.38 TCGA-EK-A2PG-01 3 125165577 125165577 C G SNX4 3'UTR 0.20 TCGA-EK-A2PG-01 3 127391844 127391844 C G ABTB1 5'UTR 0.33 TCGA-EK-A2PG-01 3 129270146 129270146 C T H1FOO Missense_Mutation p.S335L 0.17 deleterious(0.01) possibly_damaging(0.797) TCGA-EK-A2PG-01 3 129284253 129284253 C T PLXND1 Missense_Mutation p.R1484Q 0.30 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 3 132408001 132408001 C T NPHP3 Missense_Mutation p.E934K 0.22 tolerated(0.34) benign(0.079) TCGA-EK-A2PG-01 3 133647777 133647777 C G C3orf36 5'UTR 0.27 TCGA-EK-A2PG-01 3 137907290 137907290 G A ARMC8 Intron 0.23 TCGA-EK-A2PG-01 3 141164487 141164487 G C ZBTB38 Missense_Mutation p.R1086T 0.13 tolerated(0.09) probably_damaging(0.999) TCGA-EK-A2PG-01 3 141291535 141291535 G A RASA2 Silent p.L418L 0.19 TCGA-EK-A2PG-01 3 149192538 149192538 C T TM4SF4 5'UTR 0.12 TCGA-EK-A2PG-01 3 15093854 15093854 G T MRPS25 3'UTR 0.64 TCGA-EK-A2PG-01 3 155314020 155314020 C G PLCH1 Splice_Site p.X64_splice 0.15 TCGA-EK-A2PG-01 3 155654232 155654232 G A GMPS Missense_Mutation p.R638Q 0.34 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 3 158415319 158415319 C A RARRES1 3'UTR 0.14 TCGA-EK-A2PG-01 3 160150959 160150959 G C SMC4 Missense_Mutation p.D1226H 0.36 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 3 160965077 160965077 G A NMD3 Missense_Mutation p.E388K 0.16 tolerated(0.42) benign(0.012) TCGA-EK-A2PG-01 3 170198769 170198769 C G SLC7A14 Missense_Mutation p.E434D 0.07 tolerated(0.61) benign(0.034) TCGA-EK-A2PG-01 3 173997105 173997105 C G NLGN1 Missense_Mutation p.F438L 0.21 tolerated(0.08) probably_damaging(0.98) TCGA-EK-A2PG-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.38 deleterious(0.02) probably_damaging(0.959) TCGA-EK-A2PG-01 3 179144019 179144019 G A GNB4 5'UTR 0.21 TCGA-EK-A2PG-01 3 183824066 183824066 G A HTR3E Missense_Mutation p.R385K 0.13 tolerated(1) benign(0.01) TCGA-EK-A2PG-01 3 184019826 184019826 A T PSMD2 Missense_Mutation p.N224I 0.14 deleterious(0.02) benign(0.042) TCGA-EK-A2PG-01 3 184910079 184910079 A G EHHADH Missense_Mutation p.S703P 0.08 deleterious(0.01) possibly_damaging(0.723) TCGA-EK-A2PG-01 3 184953231 184953231 G A EHHADH Silent p.F66F 0.30 TCGA-EK-A2PG-01 3 185764660 185764660 C T ETV5 3'UTR 0.15 TCGA-EK-A2PG-01 3 37092278 37092278 G A MLH1 3'UTR 0.59 TCGA-EK-A2PG-01 3 38042986 38042986 C T VILL Missense_Mutation p.P408S 0.76 tolerated(0.21) possibly_damaging(0.764) TCGA-EK-A2PG-01 3 42917302 42917302 G A CYP8B1 Missense_Mutation p.L3F 0.28 tolerated(0.36) benign(0.006) TCGA-EK-A2PG-01 3 45944539 45944539 C A CCR9 3'UTR 0.56 TCGA-EK-A2PG-01 3 47164447 47164447 G A SETD2 Missense_Mutation p.S560L 0.50 deleterious_low_confidence(0.02) benign(0.293) TCGA-EK-A2PG-01 3 49721388 49721388 T C APEH 3'UTR 0.53 TCGA-EK-A2PG-01 3 50379941 50379941 T C ZMYND10 Missense_Mutation p.K254E 0.21 deleterious(0) benign(0.394) TCGA-EK-A2PG-01 3 51696554 51696554 G C RAD54L2 Missense_Mutation p.E1174D 0.45 tolerated_low_confidence(0.11) benign(0.112) TCGA-EK-A2PG-01 3 52257135 52257135 C G TLR9 Missense_Mutation p.Q553H 0.16 deleterious(0.03) possibly_damaging(0.894) TCGA-EK-A2PG-01 3 52412643 52412643 C T DNAH1 Silent p.F2408F 0.39 TCGA-EK-A2PG-01 3 53846062 53846062 G A CACNA1D 3'UTR 0.43 TCGA-EK-A2PG-01 3 63813388 63813388 C T C3orf49 Missense_Mutation p.S186L 0.33 tolerated_low_confidence(0.06) benign(0.021) TCGA-EK-A2PG-01 3 69054329 69054329 G A EOGT Silent p.L159L 0.24 TCGA-EK-A2PG-01 3 74535633 74535633 C T CNTN3 Missense_Mutation p.S111N 0.47 deleterious(0) probably_damaging(0.984) TCGA-EK-A2PG-01 3 78666904 78666904 G C ROBO1 Missense_Mutation p.S1388C 0.51 deleterious(0) probably_damaging(0.987) TCGA-EK-A2PG-01 3 9512245 9512245 G C SETD5 Missense_Mutation p.D943H 0.47 deleterious(0.01) probably_damaging(0.976) TCGA-EK-A2PG-01 4 1084614 1084614 G C RNF212 Missense_Mutation p.Q87E 0.49 deleterious(0.01) possibly_damaging(0.848) TCGA-EK-A2PG-01 4 110615848 110615848 C T CASP6 Missense_Mutation p.V106I 0.40 tolerated(0.08) benign(0.002) TCGA-EK-A2PG-01 4 124323449 124323449 G A SPRY1 Missense_Mutation p.D235N 0.33 deleterious(0) probably_damaging(0.99) TCGA-EK-A2PG-01 4 128627997 128627997 G A INTU Missense_Mutation p.G715E 0.25 tolerated(0.21) benign(0.007) TCGA-EK-A2PG-01 4 129796327 129796327 G C JADE1 3'UTR 0.43 TCGA-EK-A2PG-01 4 15482423 15482423 G A CC2D2A Silent p.L73L 0.35 TCGA-EK-A2PG-01 4 159573124 159573124 G A RXFP1 Missense_Mutation p.E731K 0.38 tolerated_low_confidence(0.34) benign(0.001) TCGA-EK-A2PG-01 4 164272516 164272516 G C NPY5R Missense_Mutation p.R364P 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-EK-A2PG-01 4 1718566 1718566 G A TMEM129 3'UTR 0.38 TCGA-EK-A2PG-01 4 174458096 174458096 G C HAND2-AS1 RNA 0.31 TCGA-EK-A2PG-01 4 184240795 184240795 G A CLDN22 Missense_Mutation p.P193S 0.32 tolerated(0.23) benign(0.01) TCGA-EK-A2PG-01 4 187004428 187004428 G A TLR3 Missense_Mutation p.E530K 0.10 tolerated(0.84) benign(0.005) TCGA-EK-A2PG-01 4 187157959 187157959 G C KLKB1 Missense_Mutation p.G118A 0.22 deleterious(0) probably_damaging(0.986) TCGA-EK-A2PG-01 4 187629805 187629805 G A FAT1 Missense_Mutation p.P393S 0.28 probably_damaging(0.937) TCGA-EK-A2PG-01 4 37592147 37592147 T A C4orf19 Missense_Mutation p.V157D 0.65 deleterious(0.04) probably_damaging(0.962) TCGA-EK-A2PG-01 4 38054812 38054812 G A TBC1D1 Intron 0.34 TCGA-EK-A2PG-01 4 38799315 38799315 G C TLR1 Missense_Mutation p.Q380E 0.23 deleterious(0.03) benign(0.008) TCGA-EK-A2PG-01 4 38916592 38916592 C T FAM114A1 Silent p.L281L 0.13 TCGA-EK-A2PG-01 4 40792633 40792633 C A NSUN7 Missense_Mutation p.H351N 0.21 tolerated(0.17) benign(0.005) TCGA-EK-A2PG-01 4 41635754 41635754 C T LIMCH1 Intron 0.29 TCGA-EK-A2PG-01 4 44652035 44652035 G C YIPF7 Missense_Mutation p.S52C 0.30 tolerated(0.05) benign(0.016) TCGA-EK-A2PG-01 4 48555334 48555334 C T FRYL Missense_Mutation p.E1445K 0.27 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PG-01 4 5564516 5564516 C T EVC2 3'UTR 0.20 TCGA-EK-A2PG-01 4 62936592 62936592 C G LPHN3 Nonsense_Mutation p.S1459* 0.52 TCGA-EK-A2PG-01 4 70079880 70079880 C T UGT2B11 Silent p.L187L 0.41 TCGA-EK-A2PG-01 4 70080030 70080030 C T UGT2B11 Missense_Mutation p.M137I 0.33 tolerated(0.13) benign(0.074) TCGA-EK-A2PG-01 4 70080441 70080441 C G UGT2B11 5'UTR 0.36 TCGA-EK-A2PG-01 4 7045505 7045505 G A TADA2B Missense_Mutation p.E67K 0.30 tolerated(0.77) benign(0.063) TCGA-EK-A2PG-01 4 77661028 77661028 G C SHROOM3 Missense_Mutation p.D568H 0.33 deleterious(0.01) possibly_damaging(0.707) TCGA-EK-A2PG-01 4 78783930 78783930 A T MRPL1 5'UTR 0.50 TCGA-EK-A2PG-01 4 79500189 79500189 G A ANXA3 Missense_Mutation p.E38K 0.39 tolerated(0.11) probably_damaging(0.999) TCGA-EK-A2PG-01 4 82377721 82377721 G A RASGEF1B Intron 0.25 TCGA-EK-A2PG-01 4 83802025 83802025 C T SEC31A Missense_Mutation p.E44K 0.15 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 4 8607757 8607757 G A CPZ Missense_Mutation p.E251K 0.53 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PG-01 4 86952575 86952575 G C MAPK10 Missense_Mutation p.Q374E 0.41 tolerated(0.61) benign(0.004) TCGA-EK-A2PG-01 4 89421099 89421099 G A HERC5 Missense_Mutation p.D823N 0.28 tolerated(0.37) benign(0.093) TCGA-EK-A2PG-01 5 109025723 109025723 C T MAN2A1 5'UTR 0.51 TCGA-EK-A2PG-01 5 112389569 112389569 C T MCC Silent p.K767K 0.14 TCGA-EK-A2PG-01 5 112437442 112437442 C A MCC Silent p.R464R 0.13 TCGA-EK-A2PG-01 5 112902973 112902973 C G YTHDC2 Silent p.L1009L 0.20 TCGA-EK-A2PG-01 5 115782109 115782109 G A SEMA6A 3'UTR 0.17 TCGA-EK-A2PG-01 5 131796346 131796346 G C C5orf56 Missense_Mutation p.E61Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-EK-A2PG-01 5 132535083 132535083 C T FSTL4 Missense_Mutation p.E745K 0.06 deleterious(0.03) benign(0.016) TCGA-EK-A2PG-01 5 134061008 134061008 G A SEC24A 3'UTR 0.43 TCGA-EK-A2PG-01 5 137275821 137275821 G C PKD2L2 Silent p.L609L 0.55 TCGA-EK-A2PG-01 5 137801512 137801512 G A EGR1 Missense_Mutation p.G21E 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-EK-A2PG-01 5 137803193 137803193 C T EGR1 Missense_Mutation p.S352F 0.18 deleterious(0) unknown(0) TCGA-EK-A2PG-01 5 139007520 139007520 C A UBE2D2 3'UTR 0.52 TCGA-EK-A2PG-01 5 139007637 139007637 C T UBE2D2 3'UTR 0.48 TCGA-EK-A2PG-01 5 139838437 139838437 C T ANKHD1 Silent p.L490L 0.53 TCGA-EK-A2PG-01 5 140203223 140203223 C G PCDHA5 Missense_Mutation p.F621L 0.14 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-EK-A2PG-01 5 140237744 140237744 C T PCDHA10 Missense_Mutation p.A704V 0.51 deleterious_low_confidence(0.02) benign(0.223) TCGA-EK-A2PG-01 5 140625174 140625174 G A PCDHB15 Missense_Mutation p.E10K 0.49 tolerated_low_confidence(0.57) benign(0.002) TCGA-EK-A2PG-01 5 140762636 140762636 G A PCDHGA7 Missense_Mutation p.R57Q 0.07 tolerated_low_confidence(0.59) benign(0.011) TCGA-EK-A2PG-01 5 140764536 140764536 G A PCDHGA7 Silent p.T690T 0.14 TCGA-EK-A2PG-01 5 140789474 140789474 C G PCDHGB6 Missense_Mutation p.P569A 0.11 tolerated(0.12) benign(0.111) TCGA-EK-A2PG-01 5 141007738 141007738 G C HDAC3 Missense_Mutation p.F236L 0.46 deleterious(0) possibly_damaging(0.689) TCGA-EK-A2PG-01 5 141303427 141303427 C T KIAA0141 5'UTR 0.18 TCGA-EK-A2PG-01 5 145175924 145175924 C G PRELID2 Intron 0.17 TCGA-EK-A2PG-01 5 145379827 145379827 C G SH3RF2 Silent p.L195L 0.17 TCGA-EK-A2PG-01 5 146775188 146775188 G A DPYSL3 Missense_Mutation p.R634W 0.11 deleterious(0) possibly_damaging(0.902) TCGA-EK-A2PG-01 5 150920207 150920207 G C FAT2 Missense_Mutation p.S2987C 0.50 probably_damaging(0.997) TCGA-EK-A2PG-01 5 153372602 153372602 G C FAM114A2 Silent p.L484L 0.36 TCGA-EK-A2PG-01 5 158126044 158126044 C G EBF1 3'UTR 0.18 TCGA-EK-A2PG-01 5 158584523 158584523 G C RNF145 3'Flank 0.25 TCGA-EK-A2PG-01 5 170818351 170818351 G A NPM1 Missense_Mutation p.E61K 0.08 deleterious(0.02) probably_damaging(0.91) TCGA-EK-A2PG-01 5 171614915 171614915 G A STK10 Silent p.D44D 0.49 TCGA-EK-A2PG-01 5 175772332 175772332 G A SIMC1 Missense_Mutation p.E420K 0.37 tolerated(0.15) possibly_damaging(0.525) TCGA-EK-A2PG-01 5 176025280 176025280 C G GPRIN1 Missense_Mutation p.G519A 0.56 tolerated(0.63) benign(0.002) TCGA-EK-A2PG-01 5 176524393 176524393 G A FGFR4 Missense_Mutation p.E752K 0.22 deleterious(0.01) possibly_damaging(0.511) TCGA-EK-A2PG-01 5 176638922 176638922 G A NSD1 Missense_Mutation p.M1174I 0.15 tolerated_low_confidence(0.76) benign(0) TCGA-EK-A2PG-01 5 176639054 176639054 G A NSD1 Silent p.L1218L 0.12 TCGA-EK-A2PG-01 5 176943443 176943443 C G DDX41 Missense_Mutation p.Q48H 0.11 tolerated(0.13) benign(0.11) TCGA-EK-A2PG-01 5 21752032 21752032 G A CDH12 Silent p.Y733Y 0.21 TCGA-EK-A2PG-01 5 36971070 36971070 C G NIPBL Missense_Mutation p.H235D 0.53 tolerated_low_confidence(0.05) probably_damaging(0.921) TCGA-EK-A2PG-01 5 41918238 41918238 C T C5orf51 3'UTR 0.07 TCGA-EK-A2PG-01 5 60188027 60188027 G A ERCC8 Intron 0.49 TCGA-EK-A2PG-01 5 6756228 6756228 C T PAPD7 3'UTR 0.70 TCGA-EK-A2PG-01 5 72251944 72251944 C G FCHO2 Silent p.V7V 0.46 TCGA-EK-A2PG-01 5 75960943 75960943 G C IQGAP2 Missense_Mutation p.L874F 0.45 deleterious(0) probably_damaging(0.934) TCGA-EK-A2PG-01 5 7802445 7802445 C A ADCY2 Missense_Mutation p.L915I 0.21 deleterious(0) probably_damaging(0.971) TCGA-EK-A2PG-01 5 78351647 78351647 C T DMGDH Missense_Mutation p.E121K 0.14 tolerated(0.34) benign(0.074) TCGA-EK-A2PG-01 5 85583496 85583496 C T NBPF22P RNA 0.16 TCGA-EK-A2PG-01 5 876231 876231 G A BRD9 Silent p.L456L 0.47 TCGA-EK-A2PG-01 5 90106537 90106537 G C GPR98 Missense_Mutation p.E5154Q 0.25 possibly_damaging(0.727) TCGA-EK-A2PG-01 5 90669612 90669612 C G ARRDC3 Silent p.R359R 0.20 TCGA-EK-A2PG-01 5 93076346 93076346 G C POU5F2 Silent p.L308L 0.09 TCGA-EK-A2PG-01 5 96031557 96031557 C T CAST Silent p.L52L 0.18 TCGA-EK-A2PG-01 6 105736680 105736680 G C PREP Missense_Mutation p.F469L 0.76 tolerated(1) benign(0.001) TCGA-EK-A2PG-01 6 109004181 109004181 G C FOXO3 3'UTR 0.14 TCGA-EK-A2PG-01 6 110714285 110714285 C A DDO Missense_Mutation p.G268V 0.29 deleterious(0) probably_damaging(0.936) TCGA-EK-A2PG-01 6 110777803 110777803 G C SLC22A16 Missense_Mutation p.I157M 0.06 deleterious(0.01) probably_damaging(0.964) TCGA-EK-A2PG-01 6 116600170 116600170 A T TSPYL1 Missense_Mutation p.I275N 0.93 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PG-01 6 13615599 13615599 G T NOL7 Missense_Mutation p.Q3H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-EK-A2PG-01 6 160183958 160183958 C A ACAT2 Missense_Mutation p.F21L 0.70 tolerated(0.06) benign(0.007) TCGA-EK-A2PG-01 6 161071489 161071489 A C LPA Missense_Mutation p.H30Q 0.34 tolerated(0.3) probably_damaging(0.996) TCGA-EK-A2PG-01 6 26271321 26271321 C T HIST1H3G Missense_Mutation p.E98K 0.07 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-EK-A2PG-01 6 31779758 31779758 G A HSPA1L 5'UTR 0.88 TCGA-EK-A2PG-01 6 32095492 32095492 C T ATF6B Missense_Mutation p.E43K 1.00 tolerated(0.06) benign(0.194) TCGA-EK-A2PG-01 6 32148952 32148952 C T AGER Missense_Mutation p.E395K 0.24 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EK-A2PG-01 6 35261672 35261672 G A ZNF76 Missense_Mutation p.D492N 0.27 deleterious(0.03) benign(0.025) TCGA-EK-A2PG-01 6 41085327 41085327 G C ADCY10P1 RNA 0.35 TCGA-EK-A2PG-01 6 43109524 43109524 G T PTK7 Missense_Mutation p.Q587H 0.73 deleterious(0.03) possibly_damaging(0.866) TCGA-EK-A2PG-01 6 44116106 44116106 G A TMEM63B Missense_Mutation p.E369K 0.30 tolerated(0.42) probably_damaging(0.999) TCGA-EK-A2PG-01 6 46048078 46048078 G A CLIC5 5'UTR 0.20 TCGA-EK-A2PG-01 6 46761286 46761286 C T MEP1A Intron 0.79 TCGA-EK-A2PG-01 6 56347645 56347645 T C DST Missense_Mutation p.S4457G 0.19 benign(0.101) TCGA-EK-A2PG-01 6 56392496 56392496 G A DST Missense_Mutation p.A3283V 0.14 benign(0.272) TCGA-EK-A2PG-01 6 56463367 56463367 C G DST Missense_Mutation p.K1322N 0.10 benign(0.331) TCGA-EK-A2PG-01 6 57048707 57048707 G C BAG2 Missense_Mutation p.E119Q 0.93 tolerated(0.05) possibly_damaging(0.782) TCGA-EK-A2PG-01 6 66204828 66204828 C T EYS Missense_Mutation p.C159Y 0.11 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-EK-A2PG-01 6 87969939 87969939 G C ZNF292 Missense_Mutation p.E2198Q 0.47 deleterious(0.02) possibly_damaging(0.821) TCGA-EK-A2PG-01 7 100193257 100193257 C T FBXO24 Silent p.I416I 0.33 TCGA-EK-A2PG-01 7 102988206 102988206 G T PSMC2 Missense_Mutation p.E16D 0.30 tolerated_low_confidence(0.39) benign(0.001) TCGA-EK-A2PG-01 7 103969170 103969170 G A LHFPL3 5'UTR 0.29 TCGA-EK-A2PG-01 7 105097978 105097978 G C PUS7 3'UTR 0.49 TCGA-EK-A2PG-01 7 105254171 105254171 G A ATXN7L1 Intron 0.31 TCGA-EK-A2PG-01 7 112102066 112102066 C G IFRD1 Nonsense_Mutation p.S210* 0.10 TCGA-EK-A2PG-01 7 116199521 116199521 C G CAV1 3'UTR 0.23 TCGA-EK-A2PG-01 7 128488853 128488853 G A FLNC Missense_Mutation p.E1582K 0.17 deleterious(0.01) possibly_damaging(0.746) TCGA-EK-A2PG-01 7 128492756 128492756 C T FLNC Missense_Mutation p.S1985L 0.69 deleterious(0.02) possibly_damaging(0.813) TCGA-EK-A2PG-01 7 129832592 129832592 C G TMEM209 Missense_Mutation p.L215F 0.16 tolerated(0.16) benign(0.093) TCGA-EK-A2PG-01 7 135073535 135073535 C T CNOT4 Intron 0.25 TCGA-EK-A2PG-01 7 137567330 137567330 C T CREB3L2 Missense_Mutation p.E439K 0.38 deleterious(0.01) probably_damaging(0.971) TCGA-EK-A2PG-01 7 141176718 141176718 G A TMEM178B 3'UTR 0.62 TCGA-EK-A2PG-01 7 141176836 141176836 G A TMEM178B 3'UTR 0.75 TCGA-EK-A2PG-01 7 142561388 142561388 G C EPHB6 Splice_Site p.X34_splice 0.16 TCGA-EK-A2PG-01 7 149255889 149255889 C T ZNF767 RNA 0.06 TCGA-EK-A2PG-01 7 149462120 149462120 G C ZNF467 Missense_Mutation p.Q491E 0.29 tolerated(0.68) probably_damaging(0.996) TCGA-EK-A2PG-01 7 149490395 149490395 C G SSPO Intron 0.17 TCGA-EK-A2PG-01 7 149522126 149522126 G A SSPO RNA 0.14 TCGA-EK-A2PG-01 7 150841138 150841138 G A AGAP3 3'UTR 0.27 TCGA-EK-A2PG-01 7 151921207 151921207 C G KMT2C Missense_Mutation p.Q1072H 0.15 probably_damaging(0.94) TCGA-EK-A2PG-01 7 157361625 157361625 C T PTPRN2 Silent p.L957L 0.24 TCGA-EK-A2PG-01 7 18067336 18067336 C G PRPS1L1 Missense_Mutation p.G24R 0.11 deleterious(0.01) possibly_damaging(0.906) TCGA-EK-A2PG-01 7 18674292 18674292 C T HDAC9 Missense_Mutation p.S280L 0.29 tolerated(0.08) probably_damaging(0.998) TCGA-EK-A2PG-01 7 18674294 18674295 - CAAA HDAC9 Frame_Shift_Ins p.N283Kfs*10 0.27 TCGA-EK-A2PG-01 7 21805130 21805130 G T DNAH11 Missense_Mutation p.D3016Y 0.17 probably_damaging(0.997) TCGA-EK-A2PG-01 7 21945962 21945962 G A CDCA7L Missense_Mutation p.S289L 0.19 tolerated(0.08) benign(0.218) TCGA-EK-A2PG-01 7 2703432 2703432 G T TTYH3 3'UTR 0.31 TCGA-EK-A2PG-01 7 27150230 27150230 C G HOXA3 Silent p.S10S 0.16 TCGA-EK-A2PG-01 7 28863818 28863818 G A CREB5 3'UTR 0.26 TCGA-EK-A2PG-01 7 2962373 2962373 C T CARD11 Missense_Mutation p.E722K 0.17 deleterious(0.05) benign(0.211) TCGA-EK-A2PG-01 7 31146287 31146287 C G ADCYAP1R1 Missense_Mutation p.L494V 0.28 tolerated_low_confidence(0.12) benign(0.289) TCGA-EK-A2PG-01 7 31736641 31736641 A G PPP1R17 Missense_Mutation p.M100V 0.22 tolerated_low_confidence(1) benign(0.001) TCGA-EK-A2PG-01 7 37136310 37136310 C G ELMO1 Missense_Mutation p.R405P 0.14 deleterious(0.01) benign(0.178) TCGA-EK-A2PG-01 7 44621746 44621746 G A TMED4 Silent p.L20L 0.34 TCGA-EK-A2PG-01 7 47323459 47323459 G A TNS3 Silent p.C1311C 0.18 TCGA-EK-A2PG-01 7 47698634 47698634 G A C7orf65 Silent p.Q88Q 0.13 TCGA-EK-A2PG-01 7 4827276 4827276 G A AP5Z1 Nonsense_Mutation p.W441* 0.17 TCGA-EK-A2PG-01 7 48353826 48353826 C T ABCA13 Intron 0.22 TCGA-EK-A2PG-01 7 4874663 4874663 C T RADIL Missense_Mutation p.E331K 0.38 tolerated(0.58) benign(0.007) TCGA-EK-A2PG-01 7 4899432 4899432 G C PAPOLB 3'UTR 0.24 TCGA-EK-A2PG-01 7 49815707 49815707 C T VWC2 Nonsense_Mutation p.Q226* 0.24 TCGA-EK-A2PG-01 7 53103959 53103959 G A POM121L12 Missense_Mutation p.E199K 0.06 deleterious(0.01) benign(0.083) TCGA-EK-A2PG-01 7 55224461 55224461 C T EGFR Silent p.F381F 0.14 TCGA-EK-A2PG-01 7 5940526 5940526 G A CCZ1 Missense_Mutation p.G118E 0.10 deleterious(0.01) probably_damaging(0.942) TCGA-EK-A2PG-01 7 5983563 5983563 G C RSPH10B Missense_Mutation p.P530A 0.12 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 7 6064351 6064351 G C EIF2AK1 Missense_Mutation p.Q616E 0.05 tolerated(0.4) benign(0.025) TCGA-EK-A2PG-01 7 65547435 65547435 G A ASL Silent p.L96L 0.16 TCGA-EK-A2PG-01 7 6820498 6820498 C G RSPH10B2 Missense_Mutation p.P530A 0.04 deleterious(0) probably_damaging(0.997) TCGA-EK-A2PG-01 7 72413692 72413692 C G POM121 Missense_Mutation p.Q789E 0.03 deleterious(0.01) possibly_damaging(0.907) TCGA-EK-A2PG-01 7 74005302 74005302 G A GTF2IRD1 Silent p.L881L 0.12 TCGA-EK-A2PG-01 7 76135135 76135135 G A DTX2 3'UTR 0.13 TCGA-EK-A2PG-01 7 78150813 78150813 C G MAGI2 Missense_Mutation p.E230Q 0.13 tolerated(0.34) probably_damaging(0.996) TCGA-EK-A2PG-01 7 87104772 87104772 C G ABCB4 Missense_Mutation p.E4Q 0.23 deleterious_low_confidence(0.01) benign(0.004) TCGA-EK-A2PG-01 7 88847523 88847523 T - ZNF804B Frame_Shift_Del p.Y56Tfs*30 0.17 TCGA-EK-A2PG-01 7 91726087 91726087 G A AKAP9 Missense_Mutation p.E3272K 0.44 probably_damaging(0.964) TCGA-EK-A2PG-01 7 94166900 94166900 C T CASD1 Silent p.F320F 0.40 TCGA-EK-A2PG-01 7 95001495 95001495 G A PON3 Silent p.F119F 0.37 TCGA-EK-A2PG-01 7 97842040 97842040 C T BHLHA15 Missense_Mutation p.P140L 0.32 deleterious(0.01) benign(0.205) TCGA-EK-A2PG-01 7 98638144 98638144 G A SMURF1 Silent p.I495I 0.14 TCGA-EK-A2PG-01 7 99022754 99022754 C T ATP5J2-PTCD1 Silent p.L516L 0.08 TCGA-EK-A2PG-01 8 104513288 104513288 C A RIMS2 Silent p.L58L 0.69 TCGA-EK-A2PG-01 8 11188565 11188565 G A SLC35G5 5'UTR 0.27 TCGA-EK-A2PG-01 8 12043994 12043994 G A FAM86B1 Silent p.L169L 0.10 TCGA-EK-A2PG-01 8 124998367 124998367 G C FER1L6 Missense_Mutation p.M490I 0.13 deleterious(0) benign(0.184) TCGA-EK-A2PG-01 8 124998376 124998376 G A FER1L6 Silent p.R493R 0.21 TCGA-EK-A2PG-01 8 12942027 12942027 C T DLC1 3'UTR 0.54 TCGA-EK-A2PG-01 8 131792813 131792813 G C ADCY8 Silent p.A1193A 0.04 TCGA-EK-A2PG-01 8 133899343 133899343 G C TG Missense_Mutation p.E576Q 0.20 tolerated(0.13) possibly_damaging(0.827) TCGA-EK-A2PG-01 8 133925344 133925344 G C TG Missense_Mutation p.Q1404H 0.71 deleterious(0.03) possibly_damaging(0.711) TCGA-EK-A2PG-01 8 143618387 143618387 G A BAI1 Missense_Mutation p.E1204K 0.69 deleterious(0.03) benign(0.292) TCGA-EK-A2PG-01 8 144650860 144650860 G A MROH6 Silent p.V502V 0.41 TCGA-EK-A2PG-01 8 144900399 144900399 C G PUF60 Missense_Mutation p.Q189H 0.41 tolerated(0.06) benign(0.352) TCGA-EK-A2PG-01 8 144922149 144922149 G A NRBP2 Silent p.I102I 0.65 TCGA-EK-A2PG-01 8 145730016 145730016 C T GPT Silent p.I64I 0.63 TCGA-EK-A2PG-01 8 145739866 145739866 G A RECQL4 Missense_Mutation p.S555L 0.71 deleterious(0) probably_damaging(0.986) TCGA-EK-A2PG-01 8 146107216 146107216 C A ZNF250 Missense_Mutation p.C456F 0.04 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 8 19818550 19818550 C T LPL Silent p.F426F 0.78 TCGA-EK-A2PG-01 8 41530136 41530136 C T ANK1 Missense_Mutation p.R1652Q 0.47 tolerated_low_confidence(1) benign(0.004) TCGA-EK-A2PG-01 8 42286294 42286294 G T SLC20A2 Silent p.V592V 0.19 TCGA-EK-A2PG-01 8 53852962 53852962 C T NPBWR1 Silent p.I165I 0.07 TCGA-EK-A2PG-01 8 62430629 62430629 C T ASPH Missense_Mutation p.E652K 0.26 deleterious(0) benign(0.134) TCGA-EK-A2PG-01 8 62537319 62537319 C T ASPH Intron 0.21 TCGA-EK-A2PG-01 8 71036993 71036993 G A NCOA2 Nonsense_Mutation p.Q1342* 0.04 TCGA-EK-A2PG-01 8 72129258 72129258 C G EYA1 Missense_Mutation p.E381Q 0.17 deleterious(0) possibly_damaging(0.604) TCGA-EK-A2PG-01 8 77776962 77776962 G A ZFHX4 3'UTR 0.19 TCGA-EK-A2PG-01 8 8561143 8561143 C G CLDN23 3'UTR 0.44 TCGA-EK-A2PG-01 8 89068415 89068415 A C MMP16 Silent p.G438G 0.10 TCGA-EK-A2PG-01 8 99962942 99962942 C A OSR2 Missense_Mutation p.Q239K 0.71 deleterious(0) benign(0.015) TCGA-EK-A2PG-01 9 100328229 100328229 G A TMOD1 Missense_Mutation p.V240M 0.71 deleterious(0.04) probably_damaging(0.999) TCGA-EK-A2PG-01 9 107288841 107288841 G T OR13C4 Missense_Mutation p.S217Y 0.87 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 9 124528770 124528770 C G DAB2IP Intron 0.86 TCGA-EK-A2PG-01 9 130249962 130249962 G A LRSAM1 Missense_Mutation p.E423K 0.64 tolerated(0.12) benign(0.012) TCGA-EK-A2PG-01 9 136276150 136276150 C T REXO4 Silent p.L318L 0.82 TCGA-EK-A2PG-01 9 138710415 138710415 C T CAMSAP1 Missense_Mutation p.R1336Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-EK-A2PG-01 9 5055739 5055739 C G JAK2 Nonsense_Mutation p.S336* 0.98 TCGA-EK-A2PG-01 9 79320088 79320088 C T PRUNE2 Missense_Mutation p.E2368K 0.65 tolerated(0.06) probably_damaging(0.983) TCGA-EK-A2PG-01 9 85615963 85615963 C G RASEF Missense_Mutation p.D429H 0.84 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2PG-01 9 93606256 93606256 G A SYK Missense_Mutation p.E26K 0.08 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PG-01 X 100169301 100169301 C A XKRX 3'UTR 0.17 TCGA-EK-A2PG-01 X 100743621 100743621 G A ARMCX4 Silent p.V15V 0.24 TCGA-EK-A2PG-01 X 101139182 101139182 C G ZMAT1 Missense_Mutation p.R406T 0.14 deleterious(0.02) benign(0.232) TCGA-EK-A2PG-01 X 101822760 101822760 C T NXF4 RNA 0.18 TCGA-EK-A2PG-01 X 101910559 101910559 G A GPRASP1 Missense_Mutation p.G573E 0.37 tolerated(1) benign(0.006) TCGA-EK-A2PG-01 X 102968492 102968492 T C GLRA4 Missense_Mutation p.K347E 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-EK-A2PG-01 X 103294856 103294856 C T H2BFM Missense_Mutation p.H105Y 0.30 deleterious(0) possibly_damaging(0.461) TCGA-EK-A2PG-01 X 105168893 105168893 G C NRK Missense_Mutation p.G1062A 0.23 tolerated(0.16) benign(0.007) TCGA-EK-A2PG-01 X 106040112 106040112 G A RNF128 3'UTR 0.19 TCGA-EK-A2PG-01 X 111003067 111003067 G T ALG13 Missense_Mutation p.C1085F 0.50 deleterious(0) benign(0.321) TCGA-EK-A2PG-01 X 114347761 114347761 G A LRCH2 3'UTR 0.13 TCGA-EK-A2PG-01 X 114424872 114424872 G C RBMXL3 Missense_Mutation p.E290Q 0.26 deleterious_low_confidence(0) benign(0.013) TCGA-EK-A2PG-01 X 119059328 119059328 C T NKAP Missense_Mutation p.R368Q 0.19 deleterious(0.01) unknown(0) TCGA-EK-A2PG-01 X 128622975 128622975 G C SMARCA1 Missense_Mutation p.S679C 0.12 deleterious(0.03) benign(0.03) TCGA-EK-A2PG-01 X 12994420 12994420 G A TMSB4X Missense_Mutation p.D14N 0.23 tolerated(0.11) benign(0.015) TCGA-EK-A2PG-01 X 132833993 132833993 G A GPC3 Missense_Mutation p.L389F 0.15 tolerated(0.71) benign(0.049) TCGA-EK-A2PG-01 X 13337387 13337387 C G ATXN3L Missense_Mutation p.D223H 0.11 deleterious(0) benign(0.13) TCGA-EK-A2PG-01 X 134232575 134232575 C T LINC00087 RNA 0.09 TCGA-EK-A2PG-01 X 134681106 134681106 T C DDX26B Silent p.L220L 0.35 TCGA-EK-A2PG-01 X 135431678 135431678 C T GPR112 Missense_Mutation p.S1938L 0.13 tolerated(0.29) benign(0.007) TCGA-EK-A2PG-01 X 139586773 139586773 G A SOX3 Silent p.R151R 0.36 TCGA-EK-A2PG-01 X 151935275 151935275 G A MAGEA3 Missense_Mutation p.H298Y 0.20 deleterious(0.01) benign(0.065) TCGA-EK-A2PG-01 X 153038720 153038720 G A PLXNB3 Missense_Mutation p.R1004H 0.16 tolerated(0.23) benign(0.005) TCGA-EK-A2PG-01 X 153171491 153171491 C G AVPR2 Missense_Mutation p.I177M 0.14 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 X 15349598 15349598 G A PIGA Missense_Mutation p.T152M 0.24 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 X 153674233 153674233 G A FAM50A Silent p.K90K 0.11 TCGA-EK-A2PG-01 X 155010412 155010412 G A SPRY3 3'UTR 0.20 TCGA-EK-A2PG-01 X 17746794 17746794 C G NHS Missense_Mutation p.I1395M 0.12 tolerated(0.16) benign(0.017) TCGA-EK-A2PG-01 X 19032054 19032054 T C GPR64 Silent p.P283P 0.17 TCGA-EK-A2PG-01 X 20185772 20185772 C T RPS6KA3 Missense_Mutation p.E513K 0.17 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 X 24225966 24225966 G C ZFX Missense_Mutation p.D312H 0.13 deleterious(0.03) probably_damaging(0.924) TCGA-EK-A2PG-01 X 27765662 27765662 G A DCAF8L2 Missense_Mutation p.R217H 0.11 tolerated(0.08) possibly_damaging(0.636) TCGA-EK-A2PG-01 X 27839436 27839436 C T MAGEB10 Nonsense_Mutation p.Q5* 0.29 TCGA-EK-A2PG-01 X 2951222 2951222 G A ARSH Silent p.L495L 0.16 TCGA-EK-A2PG-01 X 40465158 40465158 T G ATP6AP2 3'UTR 0.29 TCGA-EK-A2PG-01 X 47445206 47445206 C T TIMP1 Intron 0.36 TCGA-EK-A2PG-01 X 48207849 48207849 G A SSX3 Intron 0.16 TCGA-EK-A2PG-01 X 51488448 51488448 G A GSPT2 Missense_Mutation p.V576M 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-EK-A2PG-01 X 54161359 54161359 G A FAM120C Silent p.P507P 0.35 TCGA-EK-A2PG-01 X 62893986 62893986 C T ARHGEF9 Missense_Mutation p.E286K 0.08 deleterious(0) probably_damaging(1) TCGA-EK-A2PG-01 X 65242532 65242532 G A VSIG4 Intron 0.17 TCGA-EK-A2PG-01 X 69594046 69594046 G C KIF4A Missense_Mutation p.E574Q 0.12 deleterious(0.05) benign(0.244) TCGA-EK-A2PG-01 X 77086371 77086371 C G MAGT1 Missense_Mutation p.G340A 0.09 tolerated(0.56) benign(0.007) TCGA-EK-A2PG-01 X 80064057 80064057 C T BRWD3 Missense_Mutation p.R54Q 0.22 tolerated(0.65) benign(0.006) TCGA-EK-A2PG-01 X 83320049 83320049 G A RPS6KA6 Missense_Mutation p.S681L 0.13 deleterious(0.01) benign(0.015) TCGA-EK-A2PG-01 X 90690906 90690906 C G PABPC5 Missense_Mutation p.I110M 0.13 deleterious(0) probably_damaging(0.992) TCGA-EK-A2PG-01 X 95990784 95990784 G A DIAPH2 Missense_Mutation p.D54N 0.34 deleterious(0) unknown(0) TCGA-EK-A2PG-01 X 96197126 96197126 C T DIAPH2 Missense_Mutation p.H479Y 0.15 tolerated(0.58) unknown(0) TCGA-EK-A2PI-01 10 102010025 102010025 C G CWF19L1 Missense_Mutation p.G230R 0.11 deleterious(0.03) possibly_damaging(0.704) TCGA-EK-A2PI-01 10 1065758 1065758 A G IDI2 Missense_Mutation p.I128T 0.74 deleterious(0) probably_damaging(0.925) TCGA-EK-A2PI-01 10 117823975 117823975 C G GFRA1 Silent p.L444L 0.44 TCGA-EK-A2PI-01 10 75535250 75535250 C G FUT11 Intron 0.39 TCGA-EK-A2PI-01 11 4130871 4130871 C T RRM1 Intron 0.31 TCGA-EK-A2PI-01 11 55890080 55890080 G A OR8H3 Missense_Mutation p.V78I 0.41 tolerated(1) benign(0) TCGA-EK-A2PI-01 11 57235468 57235468 C T RTN4RL2 Missense_Mutation p.R140C 0.41 deleterious(0) probably_damaging(0.989) TCGA-EK-A2PI-01 11 613857 613857 C T IRF7 Missense_Mutation p.A272T 0.36 tolerated(0.58) benign(0) TCGA-EK-A2PI-01 11 613863 613863 C A IRF7 Nonsense_Mutation p.E270* 0.27 TCGA-EK-A2PI-01 11 67838320 67838320 C T CHKA Missense_Mutation p.R212Q 0.56 deleterious(0) probably_damaging(0.975) TCGA-EK-A2PI-01 12 20766487 20766487 G C PDE3A Missense_Mutation p.L374F 0.42 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PI-01 12 31555446 31555446 C T DENND5B Missense_Mutation p.E979K 0.41 deleterious(0) possibly_damaging(0.703) TCGA-EK-A2PI-01 12 52843279 52843279 C G KRT6B Missense_Mutation p.E351Q 0.45 deleterious(0.02) possibly_damaging(0.893) TCGA-EK-A2PI-01 12 53202174 53202174 T C KRT4 Silent p.Q343Q 0.34 TCGA-EK-A2PI-01 12 74933097 74933097 C T ATXN7L3B 3'UTR 0.25 TCGA-EK-A2PI-01 13 36026233 36026233 G T NBEA Silent p.T2103T 0.29 TCGA-EK-A2PI-01 13 45694778 45694778 C G GTF2F2 5'UTR 0.69 TCGA-EK-A2PI-01 14 24659482 24659482 G A TM9SF1 Intron 0.31 TCGA-EK-A2PI-01 14 24676444 24676444 C T TSSK4 Missense_Mutation p.P188L 0.34 tolerated(0.15) benign(0.037) TCGA-EK-A2PI-01 14 24886634 24886634 C T NYNRIN Silent p.F1893F 0.42 TCGA-EK-A2PI-01 14 93653229 93653229 C T TMEM251 3'UTR 0.48 TCGA-EK-A2PI-01 15 49031343 49031343 C T CEP152 Silent p.K1412K 0.51 TCGA-EK-A2PI-01 15 56383458 56383458 C G RFX7 3'UTR 0.29 TCGA-EK-A2PI-01 15 56435016 56435016 C T RFX7 Missense_Mutation p.E121K 0.32 deleterious(0.01) possibly_damaging(0.587) TCGA-EK-A2PI-01 15 59387334 59387335 - T RNF111 3'UTR 0.30 TCGA-EK-A2PI-01 15 59429282 59429282 G A MYO1E 3'UTR 0.44 TCGA-EK-A2PI-01 15 65676429 65676429 C T IGDCC4 Missense_Mutation p.G1224E 0.39 deleterious_low_confidence(0.03) benign(0.016) TCGA-EK-A2PI-01 15 86128959 86128959 G A AKAP13 Missense_Mutation p.E1356K 0.05 deleterious(0) benign(0.321) TCGA-EK-A2PI-01 16 15188041 15188041 G T RRN3 Nonsense_Mutation p.S17* 0.33 TCGA-EK-A2PI-01 16 30733487 30733487 C T SRCAP Missense_Mutation p.R1196C 0.53 possibly_damaging(0.689) TCGA-EK-A2PI-01 16 55525827 55525827 G C MMP2 Missense_Mutation p.R432P 0.54 tolerated(0.35) probably_damaging(0.993) TCGA-EK-A2PI-01 16 88783292 88783292 C G PIEZO1 Missense_Mutation p.M2225I 0.24 deleterious(0) probably_damaging(0.987) TCGA-EK-A2PI-01 16 9862723 9862723 G C GRIN2A Silent p.L860L 0.30 TCGA-EK-A2PI-01 17 39743125 39743125 G A KRT14 5'UTR 0.39 TCGA-EK-A2PI-01 17 39743132 39743132 G A KRT14 5'UTR 0.39 TCGA-EK-A2PI-01 17 45901556 45901556 G A MRPL10 3'UTR 0.07 TCGA-EK-A2PI-01 17 76227940 76227940 G A TMEM235 5'Flank 0.50 TCGA-EK-A2PI-01 17 79094811 79094811 G A AATK Silent p.P975P 0.39 TCGA-EK-A2PI-01 17 79410443 79410443 G A RP11-1055B8.7 Missense_Mutation p.D690N 0.70 possibly_damaging(0.656) TCGA-EK-A2PI-01 17 8449919 8449919 C G MYH10 Silent p.L407L 0.32 TCGA-EK-A2PI-01 18 55153852 55153853 - A ONECUT2 3'UTR 0.16 TCGA-EK-A2PI-01 18 6859839 6859839 G A ARHGAP28 Silent p.L64L 0.09 TCGA-EK-A2PI-01 18 6912104 6912104 G A ARHGAP28 Missense_Mutation p.R555H 0.35 tolerated(0.79) benign(0.002) TCGA-EK-A2PI-01 19 19369456 19369456 G A HAPLN4 Silent p.G231G 0.27 TCGA-EK-A2PI-01 19 23318765 23318765 A T ZNF730 Missense_Mutation p.K49M 0.40 deleterious(0.01) probably_damaging(0.985) TCGA-EK-A2PI-01 19 3157769 3157769 A G GNA15 Missense_Mutation p.E263G 0.12 tolerated(0.17) benign(0.418) TCGA-EK-A2PI-01 19 3651953 3651953 C T PIP5K1C Missense_Mutation p.R333Q 0.11 tolerated(0.2) benign(0.023) TCGA-EK-A2PI-01 19 38024296 38024296 C T ZNF793 Missense_Mutation p.H77Y 0.33 tolerated(0.37) benign(0) TCGA-EK-A2PI-01 19 38384856 38384856 C T WDR87 Missense_Mutation p.R457Q 0.38 possibly_damaging(0.545) TCGA-EK-A2PI-01 19 48807308 48807308 C T CCDC114 Missense_Mutation p.R215Q 0.30 deleterious(0.03) possibly_damaging(0.795) TCGA-EK-A2PI-01 19 49551990 49551990 T A CGB8 Missense_Mutation p.M3L 0.06 tolerated(0.3) benign(0.014) TCGA-EK-A2PI-01 19 57133431 57133431 T C ZNF71 Missense_Mutation p.V259A 0.05 tolerated(0.35) probably_damaging(0.978) TCGA-EK-A2PI-01 19 57133440 57133440 G A ZNF71 Missense_Mutation p.R262H 0.06 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PI-01 1 10421080 10421080 G A KIF1B Missense_Mutation p.M1337I 0.12 tolerated(0.31) benign(0.196) TCGA-EK-A2PI-01 1 1499694 1499694 C T SSU72 Intron 0.50 TCGA-EK-A2PI-01 1 150936179 150936179 G C SETDB1 Missense_Mutation p.D1211H 0.05 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PI-01 1 150938031 150938031 G A CERS2 3'UTR 0.48 TCGA-EK-A2PI-01 1 17292290 17292290 C T CROCC Missense_Mutation p.P1493L 0.48 possibly_damaging(0.851) TCGA-EK-A2PI-01 1 218475649 218475649 G A RRP15 Silent p.S51S 0.76 TCGA-EK-A2PI-01 1 231334860 231334860 G A TRIM67 Missense_Mutation p.R403H 0.28 deleterious(0.03) probably_damaging(0.991) TCGA-EK-A2PI-01 1 27238275 27238275 G A NR0B2 3'UTR 0.41 TCGA-EK-A2PI-01 1 65831791 65831791 G A DNAJC6 Missense_Mutation p.R152Q 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-EK-A2PI-01 1 78245381 78245381 C T FAM73A Missense_Mutation p.A14V 0.13 deleterious_low_confidence(0) benign(0.001) TCGA-EK-A2PI-01 20 17475568 17475568 G A BFSP1 Silent p.N383N 0.16 TCGA-EK-A2PI-01 20 23860155 23860155 G A CST5 Silent p.S53S 0.40 TCGA-EK-A2PI-01 20 42247631 42247631 C G IFT52 Missense_Mutation p.Q222E 0.67 tolerated(0.35) benign(0.004) TCGA-EK-A2PI-01 21 30701994 30701994 G A BACH1 Missense_Mutation p.E586K 0.31 deleterious(0) possibly_damaging(0.656) TCGA-EK-A2PI-01 21 32410491 32410491 G C KRTAP19-8 3'UTR 0.21 TCGA-EK-A2PI-01 21 44527584 44527584 G A U2AF1 Silent p.S7S 0.67 TCGA-EK-A2PI-01 21 45959905 45959905 C G KRTAP10-1 Silent p.L43L 0.36 TCGA-EK-A2PI-01 22 19470334 19470334 T C CDC45 Missense_Mutation p.V109A 0.32 deleterious(0.02) benign(0.061) TCGA-EK-A2PI-01 22 21351648 21351648 C T LZTR1 3'UTR 0.35 TCGA-EK-A2PI-01 22 21539525 21539525 C A FAM230B RNA 0.47 TCGA-EK-A2PI-01 22 44028049 44028049 C A EFCAB6 Missense_Mutation p.S723I 0.29 tolerated(0.26) benign(0.235) TCGA-EK-A2PI-01 2 111924269 111924269 A G BCL2L11 3'UTR 0.28 TCGA-EK-A2PI-01 2 178098816 178098816 C G NFE2L2 Missense_Mutation p.D77H 0.37 deleterious(0) probably_damaging(1) TCGA-EK-A2PI-01 2 20901381 20901381 C T C2orf43 Missense_Mutation p.M245I 0.40 deleterious(0) possibly_damaging(0.897) TCGA-EK-A2PI-01 2 73957012 73957012 G A TPRKB 3'UTR 0.09 TCGA-EK-A2PI-01 2 75720424 75720424 C G EVA1A Missense_Mutation p.E133Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PI-01 2 84821167 84821167 T C DNAH6 Silent p.D894D 0.26 TCGA-EK-A2PI-01 3 142215295 142215295 G A ATR Missense_Mutation p.H1936Y 0.24 tolerated(0.13) probably_damaging(1) TCGA-EK-A2PI-01 3 142430847 142430847 T G PLS1 Nonstop_Mutation p.*630Eext*81 0.28 TCGA-EK-A2PI-01 3 155206497 155206497 G A PLCH1 Nonsense_Mutation p.R819* 0.19 TCGA-EK-A2PI-01 3 169896685 169896685 G A PHC3 Missense_Mutation p.P19L 0.25 tolerated_low_confidence(0.08) benign(0.002) TCGA-EK-A2PI-01 3 184104671 184104671 G A CHRD Silent p.P745P 0.34 TCGA-EK-A2PI-01 3 45441741 45441741 C T LARS2 Missense_Mutation p.S80L 0.31 tolerated(0.07) benign(0.01) TCGA-EK-A2PI-01 4 109895530 109895530 C T COL25A1 Missense_Mutation p.G162E 0.10 deleterious(0) unknown(0) TCGA-EK-A2PI-01 4 110914420 110914420 C G EGF Missense_Mutation p.L918V 0.37 deleterious(0.04) possibly_damaging(0.61) TCGA-EK-A2PI-01 4 123664237 123664237 C T BBS12 Missense_Mutation p.A397V 0.12 tolerated(0.74) benign(0.032) TCGA-EK-A2PI-01 4 15717380 15717380 G A BST1 Missense_Mutation p.R221Q 0.21 tolerated(0.36) benign(0.211) TCGA-EK-A2PI-01 4 187115763 187115763 G T CYP4V2 Silent p.V108V 0.48 TCGA-EK-A2PI-01 4 3189445 3189445 A C HTT Missense_Mutation p.Q1686P 0.66 probably_damaging(0.997) TCGA-EK-A2PI-01 4 71024056 71024056 C T C4orf40 Silent p.D29D 0.08 TCGA-EK-A2PI-01 5 1293535 1293535 C T TERT Missense_Mutation p.R489K 0.07 tolerated(1) benign(0.074) TCGA-EK-A2PI-01 5 140263676 140263676 C T PCDHA13 Missense_Mutation p.S608L 0.22 deleterious_low_confidence(0.01) benign(0.219) TCGA-EK-A2PI-01 5 140263677 140263677 G A PCDHA13 Silent p.S608S 0.22 TCGA-EK-A2PI-01 5 140812447 140812447 C T PCDHGA12 Silent p.F707F 0.05 TCGA-EK-A2PI-01 5 180277836 180277836 G T ZFP62 Missense_Mutation p.S220Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PI-01 5 21752319 21752319 G A CDH12 Nonsense_Mutation p.R638* 0.28 TCGA-EK-A2PI-01 5 5318307 5318307 C T ADAMTS16 Missense_Mutation p.R1158W 0.22 deleterious(0) probably_damaging(0.932) TCGA-EK-A2PI-01 5 70307110 70307110 C G NAIP Missense_Mutation p.W220C 0.67 deleterious(0) probably_damaging(1) TCGA-EK-A2PI-01 6 116574253 116574253 G A TSPYL4 Nonsense_Mutation p.R307* 0.36 TCGA-EK-A2PI-01 6 24486350 24486350 C T GPLD1 Missense_Mutation p.A36T 0.23 tolerated(0.1) possibly_damaging(0.744) TCGA-EK-A2PI-01 6 27775456 27775456 C G HIST1H2BL Missense_Mutation p.E77Q 0.03 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-EK-A2PI-01 6 32411228 32411228 C A HLA-DRA Missense_Mutation p.L199I 0.48 deleterious(0.03) benign(0.032) TCGA-EK-A2PI-01 6 33154250 33154250 G C COL11A2 Intron 0.50 TCGA-EK-A2PI-01 6 38120554 38120554 G A ZFAND3 3'UTR 0.50 TCGA-EK-A2PI-01 6 43307899 43307899 C T ZNF318 Silent p.K1279K 0.71 TCGA-EK-A2PI-01 6 89808292 89808292 G A SRSF12 3'UTR 0.42 TCGA-EK-A2PI-01 7 105103125 105103125 T C PUS7 Missense_Mutation p.D567G 0.53 deleterious(0) probably_damaging(0.911) TCGA-EK-A2PI-01 7 12610243 12610243 T C SCIN 5'Flank 0.30 TCGA-EK-A2PI-01 7 44268619 44268619 G C CAMK2B Intron 0.38 TCGA-EK-A2PI-01 7 51240194 51240194 C T COBL Intron 0.62 TCGA-EK-A2PI-01 7 75616500 75616500 T - POR 3'Flank 0.27 TCGA-EK-A2PI-01 7 77240091 77240091 G C PTPN12 Missense_Mutation p.E258Q 0.29 deleterious(0.02) benign(0.295) TCGA-EK-A2PI-01 7 87762260 87762260 G C ADAM22 Silent p.V357V 0.36 TCGA-EK-A2PI-01 7 98553891 98553891 C T TRRAP Silent p.V2013V 0.38 TCGA-EK-A2PI-01 8 145665491 145665491 C T TONSL Missense_Mutation p.E465K 0.45 tolerated(0.87) benign(0.003) TCGA-EK-A2PI-01 8 19809403 19809403 G A LPL Missense_Mutation p.A125T 0.18 deleterious(0.02) probably_damaging(0.939) TCGA-EK-A2PI-01 8 38368656 38368656 C G C8orf86 3'UTR 0.37 TCGA-EK-A2PI-01 8 77763576 77763576 C T ZFHX4 Silent p.S1473S 0.33 TCGA-EK-A2PI-01 9 123540630 123540630 C T FBXW2 Silent p.A228A 0.50 TCGA-EK-A2PI-01 9 130551900 130551900 G A CDK9 3'UTR 0.17 TCGA-EK-A2PI-01 9 86506263 86506263 C T KIF27 Missense_Mutation p.D586N 0.41 tolerated(0.21) benign(0.199) TCGA-EK-A2PI-01 9 88842882 88842882 T G C9orf153 Missense_Mutation p.K44Q 0.17 tolerated(0.05) benign(0.001) TCGA-EK-A2PI-01 X 101910440 101910440 T G GPRASP1 Silent p.G533G 0.46 TCGA-EK-A2PI-01 X 105868321 105868321 C G CXorf57 Missense_Mutation p.T263S 0.09 deleterious(0.01) benign(0.16) TCGA-EK-A2PI-01 X 14044223 14044223 C T GEMIN8 5'UTR 0.34 TCGA-EK-A2PI-01 X 18961874 18961874 C T PHKA2 Missense_Mutation p.R224H 0.41 tolerated(0.06) benign(0.003) TCGA-EK-A2PK-01 12 123460857 123460857 G A OGFOD2 5'UTR 0.40 TCGA-EK-A2PK-01 12 45429866 45429866 C T DBX2 Silent p.P145P 0.26 TCGA-EK-A2PK-01 13 33924559 33924559 C A RP11-141M1.3 3'Flank 0.16 TCGA-EK-A2PK-01 15 48829889 48829889 G A FBN1 Missense_Mutation p.H219Y 0.62 probably_damaging(0.996) TCGA-EK-A2PK-01 15 50774208 50774208 G A USP8 Silent p.K583K 0.21 TCGA-EK-A2PK-01 16 10524831 10524831 G T ATF7IP2 Missense_Mutation p.K118N 0.31 tolerated(0.06) benign(0.263) TCGA-EK-A2PK-01 17 21826184 21826184 A T FAM27L RNA 0.24 TCGA-EK-A2PK-01 17 7416814 7416814 C T POLR2A Missense_Mutation p.T1744I 0.19 unknown(0) TCGA-EK-A2PK-01 19 12125861 12125861 C T ZNF433 Missense_Mutation p.M607I 0.43 tolerated(0.47) benign(0.003) TCGA-EK-A2PK-01 19 1220459 1220474 CACCACCGGTGGCACC - STK11 Frame_Shift_Del p.T185Sfs*97 0.31 TCGA-EK-A2PK-01 19 18344078 18344078 C T PDE4C 5'UTR 0.38 TCGA-EK-A2PK-01 19 35232521 35232522 - AC ZNF181 Frame_Shift_Ins p.V413Qfs*37 0.21 TCGA-EK-A2PK-01 19 50826953 50826953 G A KCNC3 Silent p.V419V 0.14 TCGA-EK-A2PK-01 19 52660135 52660135 G A ZNF836 Silent p.V267V 0.19 TCGA-EK-A2PK-01 19 55855196 55855196 G A SUV420H2 Missense_Mutation p.A179T 0.50 deleterious(0.01) probably_damaging(1) TCGA-EK-A2PK-01 1 200529858 200529858 T C KIF14 Missense_Mutation p.S1408G 0.20 tolerated(0.32) benign(0.003) TCGA-EK-A2PK-01 1 2264095 2264095 G A MORN1 Intron 0.54 TCGA-EK-A2PK-01 1 6133809 6133809 C T KCNAB2 Silent p.F93F 0.35 TCGA-EK-A2PK-01 20 36374999 36374999 C T CTNNBL1 Silent p.H152H 0.15 TCGA-EK-A2PK-01 20 49576788 49576788 A G MOCS3 3'UTR 0.46 TCGA-EK-A2PK-01 2 109382899 109382899 C G RANBP2 Missense_Mutation p.F1968L 0.17 deleterious(0.03) probably_damaging(0.948) TCGA-EK-A2PK-01 2 225337790 225337790 A C CUL3 3'UTR 0.25 TCGA-EK-A2PK-01 2 39478998 39478998 C G MAP4K3 Missense_Mutation p.R857T 0.27 deleterious(0) probably_damaging(0.997) TCGA-EK-A2PK-01 3 130150615 130150615 G A COL6A5 Missense_Mutation p.R1852H 0.20 deleterious(0.01) possibly_damaging(0.572) TCGA-EK-A2PK-01 3 186299285 186299285 C T DNAJB11 Silent p.D194D 0.40 TCGA-EK-A2PK-01 4 54930456 54930456 G A CHIC2 Silent p.F4F 0.13 TCGA-EK-A2PK-01 4 89326127 89326127 A G HERC6 Missense_Mutation p.T398A 0.15 tolerated(0.42) benign(0) TCGA-EK-A2PK-01 5 1033573 1033573 G A NKD2 Missense_Mutation p.E97K 0.16 tolerated(0.12) possibly_damaging(0.732) TCGA-EK-A2PK-01 5 112157655 112157655 G C APC Missense_Mutation p.D459H 0.11 possibly_damaging(0.856) TCGA-EK-A2PK-01 5 176016617 176016617 C T CDHR2 Missense_Mutation p.A1069V 0.15 tolerated(0.3) benign(0.026) TCGA-EK-A2PK-01 5 26885767 26885767 G A CDH9 Missense_Mutation p.T613M 0.12 tolerated(0.09) possibly_damaging(0.828) TCGA-EK-A2PK-01 5 65338997 65338997 G C ERBB2IP Missense_Mutation p.D467H 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-EK-A2PK-01 6 30038909 30038909 G A RNF39 Silent p.R414R 0.32 TCGA-EK-A2PK-01 6 35392381 35392381 C T PPARD Silent p.D301D 0.50 TCGA-EK-A2PK-01 6 46620895 46620897 AGA - SLC25A27 5'UTR 0.26 TCGA-EK-A2PK-01 6 87725469 87725469 C T HTR1E Silent p.A139A 0.50 TCGA-EK-A2PK-01 9 27949237 27949237 C T LINGO2 Missense_Mutation p.S478N 0.43 tolerated(0.31) benign(0.003) TCGA-EK-A2PK-01 X 100511169 100511169 G A DRP2 Missense_Mutation p.G770E 0.17 tolerated(0.19) benign(0.167) TCGA-EK-A2PK-01 X 119070810 119070810 C T NKAP Intron 0.25 TCGA-EK-A2PK-01 X 153175638 153175638 C T ARHGAP4 Missense_Mutation p.A755T 0.11 tolerated(0.55) benign(0.003) TCGA-EK-A2PK-01 X 34675064 34675064 A G TMEM47 Missense_Mutation p.F28S 0.27 deleterious(0.03) possibly_damaging(0.465) TCGA-EK-A2PK-01 X 70520878 70520878 G A NONO 3'UTR 0.21 TCGA-EK-A2PL-01 10 105906102 105906102 C T WDR96 Silent p.Q1258Q 0.32 TCGA-EK-A2PL-01 10 1061781 1061781 G A GTPBP4 Missense_Mutation p.R566Q 0.34 deleterious(0.03) possibly_damaging(0.714) TCGA-EK-A2PL-01 10 129231544 129231544 C T DOCK1 Intron 0.44 TCGA-EK-A2PL-01 10 13217641 13217641 C G MCM10 Missense_Mutation p.Q243E 0.31 tolerated(0.16) benign(0.013) TCGA-EK-A2PL-01 10 135165620 135165620 C G PRAP1 Missense_Mutation p.Q80E 0.36 tolerated(0.28) benign(0.001) TCGA-EK-A2PL-01 10 21805509 21805509 C T SKIDA1 Missense_Mutation p.E415K 0.40 deleterious_low_confidence(0) unknown(0) TCGA-EK-A2PL-01 10 32863366 32863366 G C CCDC7 3'UTR 0.41 TCGA-EK-A2PL-01 10 71267213 71267213 C G TSPAN15 3'UTR 0.39 TCGA-EK-A2PL-01 11 100864270 100864270 C G TMEM133 3'UTR 0.43 TCGA-EK-A2PL-01 11 117332163 117332163 C G DSCAML1 Intron 0.26 TCGA-EK-A2PL-01 11 11962085 11962085 G C USP47 Missense_Mutation p.R700T 0.65 tolerated(0.13) probably_damaging(0.987) TCGA-EK-A2PL-01 11 124267083 124267083 G C OR8B3 Silent p.L55L 0.37 TCGA-EK-A2PL-01 11 133807325 133807325 G A IGSF9B Nonsense_Mutation p.R209* 0.34 TCGA-EK-A2PL-01 11 1774826 1774826 G C CTSD Silent p.L382L 0.66 TCGA-EK-A2PL-01 11 62289474 62289474 T G AHNAK Missense_Mutation p.K4139Q 0.34 possibly_damaging(0.835) TCGA-EK-A2PL-01 11 62348654 62348654 G C TUT1 Missense_Mutation p.S243C 0.59 deleterious(0) probably_damaging(0.986) TCGA-EK-A2PL-01 11 63586438 63586438 G A C11orf84 Missense_Mutation p.E300K 0.23 deleterious_low_confidence(0.04) benign(0.03) TCGA-EK-A2PL-01 11 64535724 64535724 G A SF1 Missense_Mutation p.R433W 0.30 deleterious(0) probably_damaging(0.984) TCGA-EK-A2PL-01 11 6497283 6497283 G C ARFIP2 3'UTR 0.56 TCGA-EK-A2PL-01 11 6497484 6497484 G A ARFIP2 3'UTR 0.71 TCGA-EK-A2PL-01 11 6497487 6497487 G - ARFIP2 3'UTR 0.70 TCGA-EK-A2PL-01 11 6498387 6498387 G A ARFIP2 Missense_Mutation p.R328W 0.89 deleterious(0) possibly_damaging(0.513) TCGA-EK-A2PL-01 11 66975046 66975046 C T KDM2A Nonsense_Mutation p.Q125* 0.34 TCGA-EK-A2PL-01 11 71822309 71822309 A C ANAPC15 Missense_Mutation p.F5C 0.08 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PL-01 11 93461963 93461963 G C KIAA1731 Missense_Mutation p.E2426D 0.31 tolerated(0.24) benign(0.02) TCGA-EK-A2PL-01 11 95598789 95598789 G C MTMR2 Missense_Mutation p.P80A 0.20 tolerated(0.08) benign(0.013) TCGA-EK-A2PL-01 11 959489 959489 C G AP2A2 Missense_Mutation p.I40M 0.48 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PL-01 12 10339184 10339184 C G TMEM52B Missense_Mutation p.I81M 0.32 deleterious(0.02) benign(0.049) TCGA-EK-A2PL-01 12 113595227 113595227 C T DDX54 3'UTR 0.62 TCGA-EK-A2PL-01 12 113595234 113595234 C T DDX54 3'UTR 0.60 TCGA-EK-A2PL-01 12 122277702 122277702 C G HPD Missense_Mutation p.E372Q 0.29 deleterious(0) probably_damaging(1) TCGA-EK-A2PL-01 12 45782024 45782024 G A ANO6 Missense_Mutation p.E437K 0.09 deleterious(0) probably_damaging(0.94) TCGA-EK-A2PL-01 12 50410481 50410481 C T RACGAP1 Silent p.L6L 0.19 TCGA-EK-A2PL-01 12 52200842 52200842 G A SCN8A Missense_Mutation p.D1858N 0.32 deleterious(0) possibly_damaging(0.455) TCGA-EK-A2PL-01 12 52627214 52627214 C G KRT7 Nonsense_Mutation p.S45* 0.40 TCGA-EK-A2PL-01 12 53038828 53038828 G A KRT2 Missense_Mutation p.S632F 0.09 deleterious_low_confidence(0) unknown(0) TCGA-EK-A2PL-01 12 53604875 53604875 G C RARG 3'UTR 0.42 TCGA-EK-A2PL-01 12 547595 547595 G A CCDC77 Missense_Mutation p.E306K 0.45 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PL-01 12 56347184 56347184 C T DGKA Missense_Mutation p.T705M 0.23 deleterious(0.01) benign(0.381) TCGA-EK-A2PL-01 12 6690291 6690291 C T CHD4 Missense_Mutation p.E1610K 0.40 tolerated_low_confidence(0.17) benign(0.002) TCGA-EK-A2PL-01 12 70964988 70964988 T G PTPRB Missense_Mutation p.D1063A 0.43 deleterious(0) probably_damaging(1) TCGA-EK-A2PL-01 12 72038798 72038798 G A ZFC3H1 Nonsense_Mutation p.Q380* 0.43 TCGA-EK-A2PL-01 12 72074148 72074148 G C THAP2 3'UTR 0.44 TCGA-EK-A2PL-01 12 99166870 99166870 C G ANKS1B Missense_Mutation p.D1152H 0.37 deleterious(0) probably_damaging(0.997) TCGA-EK-A2PL-01 13 113140068 113140068 G C TUBGCP3 3'UTR 0.50 TCGA-EK-A2PL-01 13 45768493 45768493 C T KCTD4 Silent p.P70P 0.40 TCGA-EK-A2PL-01 14 100744646 100744646 T C YY1 3'UTR 0.27 TCGA-EK-A2PL-01 14 102391526 102391526 G A PPP2R5C Missense_Mutation p.E529K 0.42 tolerated_low_confidence(0.11) benign(0.3) TCGA-EK-A2PL-01 14 21852154 21852154 C T SUPT16H 5'UTR 0.47 TCGA-EK-A2PL-01 14 22236750 22236750 G A TRAV6 Silent p.L5L 0.35 TCGA-EK-A2PL-01 14 22386784 22386784 C G TRAV13-2 Missense_Mutation p.Q65E 0.48 tolerated(0.38) benign(0.009) TCGA-EK-A2PL-01 14 39561767 39561767 G C SEC23A Missense_Mutation p.S115C 0.42 deleterious(0.02) benign(0.087) TCGA-EK-A2PL-01 14 57114462 57114462 C G TMEM260 3'UTR 0.32 TCGA-EK-A2PL-01 14 62188340 62188340 G C HIF1A Missense_Mutation p.D138H 0.41 deleterious(0) possibly_damaging(0.905) TCGA-EK-A2PL-01 14 72945011 72945011 T C RGS6 Silent p.C276C 0.38 TCGA-EK-A2PL-01 14 74182458 74182458 C G ELMSAN1 3'UTR 0.34 TCGA-EK-A2PL-01 14 75369244 75369244 C G DLST 3'UTR 0.31 TCGA-EK-A2PL-01 14 75369319 75369319 C G DLST 3'UTR 0.38 TCGA-EK-A2PL-01 14 92040832 92040832 C G AL133373.1 Missense_Mutation p.R42P 0.38 unknown(0) TCGA-EK-A2PL-01 14 94849131 94849131 C T SERPINA1 Silent p.L148L 0.31 TCGA-EK-A2PL-01 15 34131094 34131094 G A RYR3 Missense_Mutation p.E4305K 0.38 possibly_damaging(0.507) TCGA-EK-A2PL-01 15 40557163 40557163 C T PAK6 Silent p.I59I 0.39 TCGA-EK-A2PL-01 15 41573916 41573916 C G CHP1 3'UTR 0.32 TCGA-EK-A2PL-01 15 48450996 48450996 C G MYEF2 Missense_Mutation p.E281Q 0.35 deleterious(0) probably_damaging(0.983) TCGA-EK-A2PL-01 15 54003546 54003546 G C WDR72 Missense_Mutation p.Q282E 0.51 deleterious(0) probably_damaging(0.995) TCGA-EK-A2PL-01 15 64005673 64005673 G A HERC1 Missense_Mutation p.R1448W 0.27 probably_damaging(0.965) TCGA-EK-A2PL-01 15 68120303 68120303 G A SKOR1 Intron 0.63 TCGA-EK-A2PL-01 16 22558146 22558146 C T RP11-368J21.3 RNA 0.18 TCGA-EK-A2PL-01 16 27659991 27659991 G C KIAA0556 Missense_Mutation p.D159H 0.25 deleterious(0) possibly_damaging(0.622) TCGA-EK-A2PL-01 16 4410442 4410442 C G CORO7 Intron 0.42 TCGA-EK-A2PL-01 16 4936000 4936000 C G PPL Missense_Mutation p.D886H 0.44 tolerated(0.06) benign(0.195) TCGA-EK-A2PL-01 16 69335723 69335723 G C SNTB2 3'UTR 0.33 TCGA-EK-A2PL-01 16 69481063 69481063 G T CYB5B Missense_Mutation p.G62V 0.48 deleterious(0) probably_damaging(0.992) TCGA-EK-A2PL-01 16 69481080 69481080 G A CYB5B Missense_Mutation p.E68K 0.43 deleterious(0) possibly_damaging(0.804) TCGA-EK-A2PL-01 16 75148489 75148489 G C LDHD Silent p.L188L 0.39 TCGA-EK-A2PL-01 16 81253777 81253777 G C PKD1L2 Missense_Mutation p.Q67E 0.40 tolerated(1) benign(0.033) TCGA-EK-A2PL-01 16 86614716 86614716 G C FOXL1 3'UTR 0.46 TCGA-EK-A2PL-01 16 89756984 89756984 G C CDK10 Missense_Mutation p.D62H 0.39 deleterious(0.03) benign(0.033) TCGA-EK-A2PL-01 17 10263346 10263346 G A MYH13 Silent p.V192V 0.36 TCGA-EK-A2PL-01 17 10263483 10263483 G A MYH13 Silent p.L176L 0.32 TCGA-EK-A2PL-01 17 10356553 10356553 C T MYH4 Silent p.Q1009Q 0.40 TCGA-EK-A2PL-01 17 17698750 17698750 G A RAI1 Missense_Mutation p.E830K 0.32 deleterious(0.01) benign(0.054) TCGA-EK-A2PL-01 17 17698867 17698867 G C RAI1 Missense_Mutation p.E869Q 0.39 deleterious(0) probably_damaging(0.987) TCGA-EK-A2PL-01 17 2310431 2310431 G A AC006435.1 Missense_Mutation p.T114I 0.40 unknown(0) TCGA-EK-A2PL-01 17 27277153 27277153 C T PHF12 Missense_Mutation p.D60N 0.34 deleterious(0) probably_damaging(0.958) TCGA-EK-A2PL-01 17 27277195 27277195 C G PHF12 Missense_Mutation p.E46Q 0.34 deleterious(0.03) possibly_damaging(0.532) TCGA-EK-A2PL-01 17 33313093 33313093 G T LIG3 Missense_Mutation p.V212L 0.39 tolerated(0.34) benign(0.001) TCGA-EK-A2PL-01 17 33749276 33749276 C A SLFN12 Missense_Mutation p.D258Y 0.31 tolerated(0.55) possibly_damaging(0.592) TCGA-EK-A2PL-01 17 36863784 36863784 G C MLLT6 Missense_Mutation p.D79H 0.43 deleterious(0) unknown(0) TCGA-EK-A2PL-01 17 37356643 37356643 G C RPL19 Intron 0.40 TCGA-EK-A2PL-01 17 38192033 38192033 G A MED24 Missense_Mutation p.R90W 0.31 deleterious(0) probably_damaging(0.965) TCGA-EK-A2PL-01 17 3994051 3994051 C T ZZEF1 Missense_Mutation p.E663K 0.07 deleterious(0.01) possibly_damaging(0.653) TCGA-EK-A2PL-01 17 40065808 40065808 T A ACLY Missense_Mutation p.D164V 0.08 tolerated(0.09) benign(0.052) TCGA-EK-A2PL-01 17 41348588 41348588 C T NBR1 Missense_Mutation p.A614V 0.47 tolerated(0.14) benign(0.003) TCGA-EK-A2PL-01 17 44950037 44950037 C T WNT9B Silent p.L78L 0.42 TCGA-EK-A2PL-01 17 61601590 61601590 G A KCNH6 Missense_Mutation p.R56Q 0.33 deleterious(0) probably_damaging(1) TCGA-EK-A2PL-01 17 9580162 9580162 G C USP43 Missense_Mutation p.K311N 0.06 tolerated(0.05) benign(0.284) TCGA-EK-A2PL-01 18 48450510 48450510 C T ME2 Missense_Mutation p.H367Y 0.38 deleterious(0.04) probably_damaging(0.932) TCGA-EK-A2PL-01 18 56615335 56615335 C T ZNF532 Silent p.F914F 0.43 TCGA-EK-A2PL-01 18 76754104 76754104 C T SALL3 Missense_Mutation p.R705W 0.40 deleterious(0) probably_damaging(1) TCGA-EK-A2PL-01 19 12089811 12089811 C A ZNF763 Missense_Mutation p.H361N 0.58 deleterious(0) possibly_damaging(0.661) TCGA-EK-A2PL-01 19 16033213 16033213 C T CYP4F11 Missense_Mutation p.E316K 0.55 tolerated(0.11) benign(0.17) TCGA-EK-A2PL-01 19 17767092 17767092 C G UNC13A Missense_Mutation p.E295Q 0.43 tolerated_low_confidence(0.13) benign(0.01) TCGA-EK-A2PL-01 19 19746372 19746372 C G GMIP Missense_Mutation p.G471A 0.50 tolerated(0.25) benign(0.003) TCGA-EK-A2PL-01 19 2933928 2933928 C T ZNF77 Silent p.V399V 0.60 TCGA-EK-A2PL-01 19 34838915 34838915 G C KIAA0355 Silent p.R885R 0.08 TCGA-EK-A2PL-01 19 36054415 36054415 G C ATP4A Silent p.L9L 0.16 TCGA-EK-A2PL-01 19 36133941 36133941 G A ETV2 Missense_Mutation p.G77R 0.28 deleterious(0.02) possibly_damaging(0.87) TCGA-EK-A2PL-01 19 39804698 39804698 G A LRFN1 Missense_Mutation p.R427W 0.17 deleterious(0) probably_damaging(0.981) TCGA-EK-A2PL-01 19 44079628 44079628 C T XRCC1 5'UTR 0.23 TCGA-EK-A2PL-01 19 44980766 44980766 C G ZNF180 Missense_Mutation p.L644F 0.14 tolerated(0.24) probably_damaging(0.914) TCGA-EK-A2PL-01 19 53116876 53116876 C G ZNF83 Missense_Mutation p.E314D 0.27 deleterious(0.01) probably_damaging(0.938) TCGA-EK-A2PL-01 19 54697142 54697142 G C TSEN34 Missense_Mutation p.K286N 0.25 deleterious(0) probably_damaging(1) TCGA-EK-A2PL-01 19 55705544 55705544 C G PTPRH Intron 0.22 TCGA-EK-A2PL-01 19 55995213 55995213 G C ZNF628 Missense_Mutation p.E885Q 0.22 deleterious_low_confidence(0) unknown(0) TCGA-EK-A2PL-01 19 7963642 7963642 G A LRRC8E Missense_Mutation p.E79K 0.54 tolerated(0.85) benign(0.092) TCGA-EK-A2PL-01 1 100534090 100534090 C A HIAT1 Missense_Mutation p.S256Y 0.50 deleterious(0) probably_damaging(0.996) TCGA-EK-A2PL-01 1 10689808 10689808 G A PEX14 Missense_Mutation p.E300K 0.35 tolerated_low_confidence(0.73) benign(0.003) TCGA-EK-A2PL-01 1 110993841 110993841 G A PROK1 Translation_Start_Site p.M1? 0.08 deleterious(0.05) probably_damaging(0.994) TCGA-EK-A2PL-01 1 111772377 111772377 C G CHI3L2 Intron 0.53 TCGA-EK-A2PL-01 1 117544385 117544385 C T CD101 5'UTR 0.42 TCGA-EK-A2PL-01 1 117544453 117544453 C G CD101 Nonsense_Mutation p.S5* 0.47 TCGA-EK-A2PL-01 1 150522694 150522694 G A AL356356.1 5'UTR 0.20 TCGA-EK-A2PL-01 1 150936781 150936781 G C SETDB1 Missense_Mutation p.E1273Q 0.32 tolerated(0.15) probably_damaging(0.958) TCGA-EK-A2PL-01 1 150936958 150936958 G C CERS2 3'Flank 0.31 TCGA-EK-A2PL-01 1 150937665 150937665 G A CERS2 3'UTR 0.39 TCGA-EK-A2PL-01 1 150939634 150939634 G A CERS2 Silent p.L219L 0.33 TCGA-EK-A2PL-01 1 150939640 150939640 G A CERS2 Silent p.I217I 0.35 TCGA-EK-A2PL-01 1 155917026 155917026 G C ARHGEF2 3'UTR 0.45 TCGA-EK-A2PL-01 1 156916522 156916522 G C ARHGEF11 Missense_Mutation p.Q876E 0.30 deleterious(0) probably_damaging(0.977) TCGA-EK-A2PL-01 1 171121215 171121215 G C FMO6P Missense_Mutation p.D332H 0.33 deleterious(0.01) possibly_damaging(0.537) TCGA-EK-A2PL-01 1 171244628 171244628 G C FMO1 Missense_Mutation p.L155F 0.42 tolerated(0.08) probably_damaging(0.914) TCGA-EK-A2PL-01 1 183536381 183536381 C T NCF2 Silent p.K271K 0.50 TCGA-EK-A2PL-01 1 202696876 202696876 C T KDM5B 3'UTR 0.41 TCGA-EK-A2PL-01 1 207110701 207110701 C T PIGR Missense_Mutation p.E262K 0.52 tolerated(0.31) benign(0.117) TCGA-EK-A2PL-01 1 209778935 209778935 G T CAMK1G Missense_Mutation p.E117D 0.51 deleterious(0) probably_damaging(0.996) TCGA-EK-A2PL-01 1 227178643 227178643 C G CDC42BPA 3'UTR 0.59 TCGA-EK-A2PL-01 1 236724550 236724550 C T HEATR1 Missense_Mutation p.E1541K 0.25 tolerated(0.37) benign(0.001) TCGA-EK-A2PL-01 1 24787009 24787009 C T NIPAL3 Silent p.L301L 0.29 TCGA-EK-A2PL-01 1 31907413 31907413 G A SERINC2 3'UTR 0.24 TCGA-EK-A2PL-01 1 36060335 36060335 C G TFAP2E 3'UTR 0.33 TCGA-EK-A2PL-01 1 40879805 40879805 C T SMAP2 Intron 0.32 TCGA-EK-A2PL-01 1 43392500 43392500 G A SLC2A1 3'UTR 0.44 TCGA-EK-A2PL-01 1 43392510 43392510 G A SLC2A1 3'UTR 0.44 TCGA-EK-A2PL-01 1 43392662 43392662 G C SLC2A1 3'UTR 0.29 TCGA-EK-A2PL-01 1 52287195 52287195 C T NRD1 Missense_Mutation p.E466K 0.35 tolerated(0.09) possibly_damaging(0.53) TCGA-EK-A2PL-01 1 65860702 65860702 G A DNAJC6 Silent p.S675S 0.38 TCGA-EK-A2PL-01 1 68614246 68614246 C T WLS Missense_Mutation p.R355K 0.33 deleterious(0.05) probably_damaging(0.962) TCGA-EK-A2PL-01 1 84703889 84703889 G C PRKACB 3'UTR 0.38 TCGA-EK-A2PL-01 1 87102567 87102567 G C RP4-651E10.4 Intron 0.06 TCGA-EK-A2PL-01 1 89618015 89618015 C G GBP7 Silent p.L187L 0.47 TCGA-EK-A2PL-01 1 91790314 91790314 C T HFM1 Missense_Mutation p.R782K 0.49 tolerated(0.21) possibly_damaging(0.534) TCGA-EK-A2PL-01 1 9429005 9429005 C G SPSB1 3'UTR 0.31 TCGA-EK-A2PL-01 20 21309246 21309246 C G XRN2 Nonsense_Mutation p.S122* 0.24 TCGA-EK-A2PL-01 20 238415 238415 C T DEFB132 5'UTR 0.27 TCGA-EK-A2PL-01 20 2945628 2945628 C T PTPRA Silent p.F65F 0.33 TCGA-EK-A2PL-01 20 3090095 3090095 G C UBOX5 3'UTR 0.50 TCGA-EK-A2PL-01 20 31396804 31396804 C T DNMT3B 3'UTR 0.38 TCGA-EK-A2PL-01 20 3185217 3185217 G C DDRGK1 Silent p.L19L 0.45 TCGA-EK-A2PL-01 20 39831549 39831549 C T ZHX3 Missense_Mutation p.E670K 0.41 tolerated(0.08) benign(0.033) TCGA-EK-A2PL-01 20 39831588 39831588 C T ZHX3 Missense_Mutation p.D657N 0.52 deleterious(0.05) probably_damaging(0.995) TCGA-EK-A2PL-01 20 5098124 5098124 C A PCNA Nonsense_Mutation p.E192* 0.38 TCGA-EK-A2PL-01 20 61144004 61144038 ACTCTCCAGCCCGGCTCCCCTCTTGCTGCACTCAG - C20orf166 5'Flank 0.47 TCGA-EK-A2PL-01 20 62203573 62203573 C T HELZ2 Missense_Mutation p.E56K 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-EK-A2PL-01 21 37741283 37741283 C G MORC3 Intron 0.29 TCGA-EK-A2PL-01 21 37741363 37741363 C T MORC3 Missense_Mutation p.S566L 0.41 tolerated(0.18) benign(0.003) TCGA-EK-A2PL-01 21 47700456 47700456 T G MCM3AP Missense_Mutation p.S493R 0.29 tolerated(0.52) benign(0.096) TCGA-EK-A2PL-01 22 20640910 20640910 C T AC011718.2 Intron 0.13 TCGA-EK-A2PL-01 22 21368230 21368230 G A P2RX6 5'Flank 0.70 TCGA-EK-A2PL-01 22 28192770 28192770 C T MN1 Silent p.Q1254Q 0.42 TCGA-EK-A2PL-01 22 31484503 31484503 C T SMTN Nonsense_Mutation p.Q69* 0.38 TCGA-EK-A2PL-01 22 39526873 39526873 C G CBX7 3'UTR 0.38 TCGA-EK-A2PL-01 22 39910184 39910184 C G MIEF1 Missense_Mutation p.I416M 0.45 deleterious(0) possibly_damaging(0.787) TCGA-EK-A2PL-01 2 100906845 100906845 C T LONRF2 Missense_Mutation p.V599M 0.38 deleterious(0) possibly_damaging(0.797) TCGA-EK-A2PL-01 2 11778841 11778841 C G GREB1 Missense_Mutation p.I1864M 0.29 deleterious(0.04) possibly_damaging(0.674) TCGA-EK-A2PL-01 2 162061215 162061215 G C TANK Missense_Mutation p.E80Q 0.26 deleterious(0.04) possibly_damaging(0.833) TCGA-EK-A2PL-01 2 163005610 163005610 C T GCG Missense_Mutation p.E27K 0.43 deleterious(0.01) probably_damaging(0.972) TCGA-EK-A2PL-01 2 178085034 178085034 C T HNRNPA3 3'Flank 0.34 TCGA-EK-A2PL-01 2 179554591 179554591 C T TTN Missense_Mutation p.E10599K 0.26 TCGA-EK-A2PL-01 2 17962884 17962884 C G GEN1 Missense_Mutation p.S802C 0.30 deleterious(0) probably_damaging(0.982) TCGA-EK-A2PL-01 2 204082153 204082153 C G NBEAL1 3'UTR 0.35 TCGA-EK-A2PL-01 2 210809892 210809892 G C UNC80 Missense_Mutation p.E2324Q 0.36 probably_damaging(0.99) TCGA-EK-A2PL-01 2 215890462 215890463 - T ABCA12 Frame_Shift_Ins p.S408Ifs*9 0.20 TCGA-EK-A2PL-01 2 224623401 224623401 G T AP1S3 3'UTR 0.44 TCGA-EK-A2PL-01 2 227662668 227662668 C T IRS1 Missense_Mutation p.E263K 0.36 deleterious(0) probably_damaging(0.964) TCGA-EK-A2PL-01 2 227662864 227662864 C T IRS1 Silent p.L197L 0.31 TCGA-EK-A2PL-01 2 229890630 229890630 G T PID1 Missense_Mutation p.H155Q 0.35 deleterious(0.01) possibly_damaging(0.578) TCGA-EK-A2PL-01 2 232319866 232319866 C A NCL 3'UTR 0.37 TCGA-EK-A2PL-01 2 23919346 23919346 G A KLHL29 Missense_Mutation p.G690R 0.45 deleterious(0) probably_damaging(1) TCGA-EK-A2PL-01 2 26804232 26804232 C T CIB4 Silent p.%3D 0.27 TCGA-EK-A2PL-01 2 27447715 27447715 C G CAD Missense_Mutation p.L453V 0.28 deleterious(0.03) possibly_damaging(0.697) TCGA-EK-A2PL-01 2 27522162 27522162 G C TRIM54 Missense_Mutation p.E131Q 0.35 deleterious(0.04) benign(0.026) TCGA-EK-A2PL-01 2 27726397 27726397 G C GCKR Missense_Mutation p.D221H 0.46 deleterious(0.03) probably_damaging(0.946) TCGA-EK-A2PL-01 2 33820590 33820590 G A FAM98A Silent p.L56L 0.27 TCGA-EK-A2PL-01 2 61145397 61145397 G A REL Missense_Mutation p.E203K 0.48 deleterious(0) probably_damaging(0.992) TCGA-EK-A2PL-01 2 61575399 61575399 G C USP34 Missense_Mutation p.H631D 0.39 tolerated_low_confidence(0.48) benign(0.005) TCGA-EK-A2PL-01 2 70504018 70504018 C T PCYOX1 Nonsense_Mutation p.Q338* 0.39 TCGA-EK-A2PL-01 2 86267661 86267661 C T POLR1A Silent p.L1198L 0.27 TCGA-EK-A2PL-01 2 86276325 86276325 C G POLR1A Missense_Mutation p.K811N 0.36 deleterious(0.03) benign(0.082) TCGA-EK-A2PL-01 3 164906461 164906461 C A SLITRK3 Missense_Mutation p.G720W 0.48 deleterious(0.04) possibly_damaging(0.619) TCGA-EK-A2PL-01 3 190105955 190105955 C G CLDN16 Missense_Mutation p.S16C 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.52) TCGA-EK-A2PL-01 3 30729968 30729968 C T TGFBR2 Nonsense_Mutation p.R522* 0.41 TCGA-EK-A2PL-01 3 51860956 51860956 G C IQCF3 5'UTR 0.74 TCGA-EK-A2PL-01 3 7188329 7188329 C T GRM7 Missense_Mutation p.S237F 0.57 deleterious(0) benign(0.197) TCGA-EK-A2PL-01 3 89468499 89468499 A C EPHA3 Missense_Mutation p.D678A 0.60 deleterious(0) benign(0.437) TCGA-EK-A2PL-01 4 142950044 142950044 A G INPP4B Missense_Mutation p.V889A 0.20 tolerated(0.07) benign(0.303) TCGA-EK-A2PL-01 4 152042279 152042279 G A SH3D19 3'UTR 0.67 TCGA-EK-A2PL-01 4 153247367 153247367 G C FBXW7 Missense_Mutation p.R479G 0.60 deleterious(0) probably_damaging(1) TCGA-EK-A2PL-01 4 15482840 15482840 G C CC2D2A Intron 0.65 TCGA-EK-A2PL-01 4 156643280 156643280 C T GUCY1A3 Silent p.L603L 0.51 TCGA-EK-A2PL-01 4 166000823 166000823 G C TMEM192 Missense_Mutation p.P268R 0.64 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-EK-A2PL-01 4 177069281 177069281 C T WDR17 Intron 0.61 TCGA-EK-A2PL-01 4 2877717 2877717 C T ADD1 Silent p.F25F 0.23 TCGA-EK-A2PL-01 4 6325074 6325074 G C PPP2R2C Missense_Mutation p.N433K 0.57 deleterious(0) probably_damaging(0.967) TCGA-EK-A2PL-01 4 69433770 69433770 T C UGT2B17 Missense_Mutation p.K145E 0.21 tolerated(0.05) possibly_damaging(0.591) TCGA-EK-A2PL-01 4 71654543 71654543 G A RUFY3 Silent p.E364E 0.08 TCGA-EK-A2PL-01 4 73176775 73176775 C T ADAMTS3 Missense_Mutation p.G682E 0.15 deleterious(0) probably_damaging(0.991) TCGA-EK-A2PL-01 4 73956516 73956516 G A ANKRD17 Nonsense_Mutation p.Q2277* 0.24 TCGA-EK-A2PL-01 4 85707190 85707190 G A WDFY3 Missense_Mutation p.T1335I 0.49 deleterious(0) possibly_damaging(0.697) TCGA-EK-A2PL-01 5 1081831 1081831 C T SLC12A7 Silent p.A386A 0.46 TCGA-EK-A2PL-01 5 110440408 110440408 G C WDR36 Missense_Mutation p.D363H 0.63 deleterious(0) probably_damaging(0.996) TCGA-EK-A2PL-01 5 146770837 146770837 G C DPYSL3 3'UTR 0.69 TCGA-EK-A2PL-01 5 176794490 176794490 G A RGS14 Missense_Mutation p.E187K 0.60 deleterious(0) probably_damaging(0.983) TCGA-EK-A2PL-01 5 32110196 32110196 C G PDZD2 3'UTR 0.46 TCGA-EK-A2PL-01 5 38876431 38876431 C T OSMR Nonsense_Mutation p.Q68* 0.13 TCGA-EK-A2PL-01 5 77423876 77423876 C T AP3B1 Missense_Mutation p.R649Q 0.45 deleterious(0) probably_damaging(0.996) TCGA-EK-A2PL-01 5 90671370 90671370 T - ARRDC3 Frame_Shift_Del p.I191Yfs*3 0.49 TCGA-EK-A2PL-01 5 95018273 95018273 C G SPATA9 Missense_Mutation p.D37H 0.66 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PL-01 6 111697429 111697429 G C REV3L Missense_Mutation p.S710C 0.31 deleterious(0.02) benign(0.005) TCGA-EK-A2PL-01 6 125621802 125621803 CT - HDDC2 Frame_Shift_Del p.R29Sfs*34 0.24 TCGA-EK-A2PL-01 6 127836178 127836178 C G SOGA3 Missense_Mutation p.E372D 0.27 tolerated(0.1) possibly_damaging(0.897) TCGA-EK-A2PL-01 6 131912530 131912530 C T MED23 Missense_Mutation p.M1203I 0.37 tolerated(0.33) benign(0.091) TCGA-EK-A2PL-01 6 152540235 152540235 G C SYNE1 Missense_Mutation p.A7316G 0.09 benign(0.027) TCGA-EK-A2PL-01 6 152782776 152782776 C G SYNE1 Missense_Mutation p.E784Q 0.50 benign(0.041) TCGA-EK-A2PL-01 6 168708148 168708148 G A DACT2 Silent p.F763F 0.60 TCGA-EK-A2PL-01 6 18212785 18212785 G A KDM1B Missense_Mutation p.E413K 0.72 tolerated(0.08) unknown(0) TCGA-EK-A2PL-01 6 26205213 26205213 G C HIST1H4E 3'UTR 0.60 TCGA-EK-A2PL-01 6 41754697 41754697 G C PRICKLE4 Missense_Mutation p.E329Q 0.28 tolerated_low_confidence(0.11) benign(0.029) TCGA-EK-A2PL-01 6 47251693 47251693 G C TNFRSF21 Missense_Mutation p.I408M 0.65 deleterious(0.04) benign(0.141) TCGA-EK-A2PL-01 7 101813723 101813723 C G CUX1 Intron 0.37 TCGA-EK-A2PL-01 7 101813778 101813778 C T CUX1 Missense_Mutation p.S270L 0.35 tolerated(0.06) unknown(0) TCGA-EK-A2PL-01 7 104753289 104753289 C G KMT2E Missense_Mutation p.P1696A 0.67 tolerated_low_confidence(0.13) benign(0.044) TCGA-EK-A2PL-01 7 20193845 20193845 G C MACC1 Missense_Mutation p.R773G 0.28 deleterious(0) benign(0.26) TCGA-EK-A2PL-01 7 47384590 47384590 C T TNS3 Missense_Mutation p.R833K 0.37 tolerated(1) benign(0.194) TCGA-EK-A2PL-01 7 47698599 47698599 C G C7orf65 Missense_Mutation p.L77V 0.41 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-EK-A2PL-01 7 98452886 98452886 G A TMEM130 Silent p.T260T 0.05 TCGA-EK-A2PL-01 8 101270341 101270341 G A RNF19A 3'UTR 0.27 TCGA-EK-A2PL-01 8 120831654 120831654 G C TAF2 Missense_Mutation p.I77M 0.40 deleterious(0.05) benign(0.079) TCGA-EK-A2PL-01 8 143352859 143352859 C T TSNARE1 Intron 0.40 TCGA-EK-A2PL-01 8 28610388 28610388 C G EXTL3 3'UTR 0.39 TCGA-EK-A2PL-01 8 30700365 30700365 C T TEX15 Missense_Mutation p.E2057K 0.18 deleterious(0.04) benign(0.385) TCGA-EK-A2PL-01 8 92982883 92982883 C T RUNX1T1 Intron 0.29 TCGA-EK-A2PL-01 9 102626611 102626611 C G NR4A3 3'UTR 0.47 TCGA-EK-A2PL-01 9 114508574 114508574 G C C9orf84 Missense_Mutation p.S276C 0.51 deleterious(0.04) possibly_damaging(0.873) TCGA-EK-A2PL-01 9 140331374 140331374 C A ENTPD8 Nonsense_Mutation p.E168* 0.55 TCGA-EK-A2PL-01 9 21331047 21331047 G C KLHL9 3'UTR 0.74 TCGA-EK-A2PL-01 9 3275593 3275593 T C RFX3 Silent p.P331P 0.18 TCGA-EK-A2PL-01 9 405010 405010 G A DOCK8 Silent p.L1109L 0.62 TCGA-EK-A2PL-01 9 97062305 97062305 G C ZNF169 Missense_Mutation p.K155N 0.50 tolerated(0.48) benign(0.063) TCGA-EK-A2PL-01 X 108696910 108696910 G A GUCY2F Missense_Mutation p.S404L 0.33 tolerated(0.2) benign(0.19) TCGA-EK-A2PL-01 X 123514396 123514396 C G TENM1 Missense_Mutation p.G2730A 0.42 deleterious(0) probably_damaging(0.93) TCGA-EK-A2PL-01 X 123556368 123556368 G A TENM1 Missense_Mutation p.R1409C 0.36 deleterious(0) probably_damaging(0.961) TCGA-EK-A2PL-01 X 151899420 151899420 C G MAGEA12 3'UTR 0.31 TCGA-EK-A2PL-01 X 152825250 152825250 C G ATP2B3 Missense_Mutation p.L897V 0.22 deleterious(0) benign(0.311) TCGA-EK-A2PL-01 X 24580054 24580054 G A PCYT1B 3'UTR 0.35 TCGA-EK-A2PL-01 X 48661072 48661072 C T HDAC6 Intron 0.53 TCGA-EK-A2PL-01 X 7023850 7023850 G C HDHD1 Missense_Mutation p.Q54E 0.36 tolerated(0.6) benign(0.02) TCGA-EK-A2PL-01 X 73812025 73812025 C G RLIM Silent p.V375V 0.46 TCGA-EK-A2PL-01 X 76874434 76874434 T A ATRX Missense_Mutation p.N1763I 0.26 probably_damaging(0.999) TCGA-EK-A2PL-01 X 84526761 84526761 G A ZNF711 Missense_Mutation p.C738Y 0.38 deleterious(0) probably_damaging(1) TCGA-EK-A2PM-01 10 104170686 104170686 T A PSD Missense_Mutation p.T674S 0.17 tolerated(1) benign(0.024) TCGA-EK-A2PM-01 10 108337108 108337108 G T SORCS1 Intron 0.65 TCGA-EK-A2PM-01 10 121578896 121578896 G C INPP5F Intron 0.67 TCGA-EK-A2PM-01 10 127477414 127477414 G T UROS 3'UTR 0.33 TCGA-EK-A2PM-01 10 133757483 133757483 G C PPP2R2D Missense_Mutation p.L132F 0.69 tolerated(0.14) benign(0.014) TCGA-EK-A2PM-01 10 74994617 74994617 C T FAM149B1 Silent p.P465P 0.62 TCGA-EK-A2PM-01 10 79613995 79613995 C T DLG5 Missense_Mutation p.D224N 0.68 deleterious(0) probably_damaging(0.995) TCGA-EK-A2PM-01 10 82280640 82280640 C G TSPAN14 3'UTR 0.75 TCGA-EK-A2PM-01 10 89725043 89725043 G T PTEN Splice_Site p.X343_splice 0.56 TCGA-EK-A2PM-01 10 94397237 94397237 G A KIF11 Missense_Mutation p.E699K 0.61 tolerated(0.08) benign(0.013) TCGA-EK-A2PM-01 11 107833132 107833132 T A RAB39A 3'UTR 0.45 TCGA-EK-A2PM-01 11 111249962 111249962 G A POU2AF1 5'UTR 0.29 TCGA-EK-A2PM-01 11 113935017 113935017 G T ZBTB16 Missense_Mutation p.G332V 0.43 tolerated(0.06) benign(0.069) TCGA-EK-A2PM-01 11 119535753 119535753 C T PVRL1 Missense_Mutation p.D420N 0.27 deleterious(0) possibly_damaging(0.455) TCGA-EK-A2PM-01 11 120190004 120190004 C G POU2F3 3'UTR 0.39 TCGA-EK-A2PM-01 11 120776103 120776103 C G GRIK4 Silent p.L459L 0.30 TCGA-EK-A2PM-01 11 17498346 17498346 C T ABCC8 5'UTR 0.53 TCGA-EK-A2PM-01 11 46564236 46564236 G A AMBRA1 Missense_Mutation p.S354L 0.48 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-EK-A2PM-01 11 5462187 5462187 G A OR51I1 Silent p.L186L 0.35 TCGA-EK-A2PM-01 11 55658629 55658629 G A TRIM51 Missense_Mutation p.E294K 0.43 deleterious(0.02) benign(0.04) TCGA-EK-A2PM-01 11 57070031 57070031 C A TNKS1BP1 Missense_Mutation p.A1529S 0.27 deleterious(0.03) benign(0.001) TCGA-EK-A2PM-01 11 57075888 57075888 C A TNKS1BP1 Missense_Mutation p.A1433S 0.47 tolerated(0.31) benign(0.016) TCGA-EK-A2PM-01 11 57512268 57512268 C T BTBD18 Missense_Mutation p.E493K 0.12 deleterious(0) probably_damaging(0.955) TCGA-EK-A2PM-01 11 59361137 59361137 G A OSBP Missense_Mutation p.R540C 0.28 deleterious(0) probably_damaging(0.965) TCGA-EK-A2PM-01 11 61730014 61730035 GCTACTACAGTGCCCCACAGAC - BEST1 Frame_Shift_Del p.Y404Pfs*11 0.56 TCGA-EK-A2PM-01 11 62361261 62361261 C G MTA2 3'UTR 0.64 TCGA-EK-A2PM-01 11 62439134 62439134 C T C11orf48 5'Flank 0.29 TCGA-EK-A2PM-01 11 62651929 62651929 G A SLC3A2 Missense_Mutation p.D333N 0.25 tolerated(0.2) benign(0.003) TCGA-EK-A2PM-01 11 63676474 63676474 T C MARK2 Missense_Mutation p.M711T 0.07 deleterious(0) benign(0.342) TCGA-EK-A2PM-01 11 63723659 63723659 C T NAA40 3'UTR 0.37 TCGA-EK-A2PM-01 11 64428457 64428457 C G NRXN2 Silent p.R651R 0.14 TCGA-EK-A2PM-01 11 64627615 64627615 C G EHD1 Silent p.V232V 0.26 TCGA-EK-A2PM-01 11 66324646 66324646 A T CTD-3074O7.2 3'Flank 0.39 TCGA-EK-A2PM-01 11 68192732 68192732 G C LRP5 Silent p.L1133L 0.30 TCGA-EK-A2PM-01 11 72538336 72538336 C T ATG16L2 Silent p.S490S 0.39 TCGA-EK-A2PM-01 11 74800316 74800316 G A OR2AT4 Missense_Mutation p.T148I 0.19 tolerated(0.41) benign(0.002) TCGA-EK-A2PM-01 11 77340878 77340878 A T CLNS1A Missense_Mutation p.H64Q 0.22 deleterious(0.03) possibly_damaging(0.826) TCGA-EK-A2PM-01 11 77991654 77991656 CTC - GAB2 In_Frame_Del p.E123del 0.21 TCGA-EK-A2PM-01 11 83166319 83166319 T A DLG2 3'Flank 0.47 TCGA-EK-A2PM-01 11 88386447 88386447 G T GRM5 Missense_Mutation p.P346T 0.35 tolerated(0.08) probably_damaging(1) TCGA-EK-A2PM-01 11 92087287 92087287 C A FAT3 Nonsense_Mutation p.S670* 0.24 TCGA-EK-A2PM-01 11 9516301 9516301 C T ZNF143 Missense_Mutation p.H252Y 0.77 deleterious(0.03) benign(0.393) TCGA-EK-A2PM-01 12 104382282 104382282 T G TDG 3'UTR 0.14 TCGA-EK-A2PM-01 12 109843778 109843778 G C MYO1H Missense_Mutation p.E285Q 0.83 tolerated(0.5) benign(0.006) TCGA-EK-A2PM-01 12 11061753 11061753 T G TAS2R13 Missense_Mutation p.I49L 0.67 tolerated(0.48) benign(0.005) TCGA-EK-A2PM-01 12 111744900 111744900 A G CUX2 Missense_Mutation p.K345R 0.76 tolerated(0.06) probably_damaging(0.998) TCGA-EK-A2PM-01 12 124402287 124402287 C A DNAH10 Missense_Mutation p.T3602K 0.57 possibly_damaging(0.531) TCGA-EK-A2PM-01 12 131360524 131360524 G C RAN 3'UTR 0.10 TCGA-EK-A2PM-01 12 132472277 132472277 G A EP400 Missense_Mutation p.E751K 0.72 unknown(0) TCGA-EK-A2PM-01 12 32530864 32530864 C G BICD1 3'Flank 0.50 TCGA-EK-A2PM-01 12 40076812 40076812 G C C12orf40 Missense_Mutation p.L362F 0.85 tolerated(1) benign(0.004) TCGA-EK-A2PM-01 12 48251431 48251431 C T VDR Missense_Mutation p.M156I 0.73 tolerated(0.08) benign(0.022) TCGA-EK-A2PM-01 12 48393727 48393727 G T COL2A1 Nonsense_Mutation p.C89* 0.61 TCGA-EK-A2PM-01 12 49427111 49427111 G A KMT2D Nonsense_Mutation p.Q3793* 0.69 TCGA-EK-A2PM-01 12 56431424 56431424 G C IKZF4 3'UTR 0.72 TCGA-EK-A2PM-01 12 63977749 63977749 A G DPY19L2 Intron 0.70 TCGA-EK-A2PM-01 12 69650495 69650495 T C CPSF6 Silent p.V131V 0.17 TCGA-EK-A2PM-01 12 70178565 70178565 A G RAB3IP Silent p.E208E 0.50 TCGA-EK-A2PM-01 12 9002262 9002262 C T A2ML1 Intron 0.79 TCGA-EK-A2PM-01 12 94653479 94653479 G A PLXNC1 Missense_Mutation p.E1074K 0.47 deleterious(0) probably_damaging(1) TCGA-EK-A2PM-01 13 31205523 31205523 G A USPL1 Silent p.S260S 0.16 TCGA-EK-A2PM-01 13 31227300 31227300 C T USPL1 Silent p.F418F 0.28 TCGA-EK-A2PM-01 13 39550850 39550866 GAGATGGGGAAGGTAAT - STOML3 Frame_Shift_Del p.I41Hfs*9 0.51 TCGA-EK-A2PM-01 13 46170667 46170667 C T FAM194B Silent p.L158L 0.62 TCGA-EK-A2PM-01 13 99356572 99356572 G A SLC15A1 Silent p.L463L 0.63 TCGA-EK-A2PM-01 14 105411033 105411033 C T AHNAK2 Silent p.L3585L 0.58 TCGA-EK-A2PM-01 14 21861276 21861276 C G CHD8 Missense_Mutation p.E2153Q 0.68 tolerated(0.26) benign(0.403) TCGA-EK-A2PM-01 14 60470336 60470336 C A LRRC9 Intron 0.56 TCGA-EK-A2PM-01 14 65213582 65213582 C G SPTB 3'UTR 0.52 TCGA-EK-A2PM-01 14 75485617 75485617 G A MLH3 Missense_Mutation p.S1386L 0.79 tolerated(0.2) benign(0.001) TCGA-EK-A2PM-01 14 76928889 76928889 G T ESRRB Silent p.G133G 0.69 TCGA-EK-A2PM-01 14 91634013 91634013 G A C14orf159 Intron 0.58 TCGA-EK-A2PM-01 15 23890425 23890425 T C MAGEL2 Missense_Mutation p.Q219R 0.67 deleterious(0) benign(0.194) TCGA-EK-A2PM-01 15 32460411 32460411 C A CHRNA7 Missense_Mutation p.L450M 0.31 tolerated(0.14) benign(0.1) TCGA-EK-A2PM-01 15 42146345 42146345 C T SPTBN5 Missense_Mutation p.G3226E 0.54 benign(0.126) TCGA-EK-A2PM-01 15 51790822 51790822 G A DMXL2 Silent p.F1533F 0.73 TCGA-EK-A2PM-01 15 64981338 64981338 C T OAZ2 Silent p.E128E 0.85 TCGA-EK-A2PM-01 15 65903253 65903253 C T VWA9 Intron 0.76 TCGA-EK-A2PM-01 15 75014035 75014035 G T CYP1A1 Missense_Mutation p.D283E 0.56 deleterious(0) possibly_damaging(0.889) TCGA-EK-A2PM-01 15 79749063 79749063 C G KIAA1024 Missense_Mutation p.L192V 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-EK-A2PM-01 15 89381937 89381937 G A ACAN Silent p.P38P 0.62 TCGA-EK-A2PM-01 16 11856557 11856557 C T ZC3H7A Silent p.Q683Q 0.92 TCGA-EK-A2PM-01 16 19451601 19451601 C G TMC5 Missense_Mutation p.P81A 0.33 tolerated_low_confidence(0.09) benign(0.055) TCGA-EK-A2PM-01 16 21629232 21629232 C T METTL9 Nonsense_Mutation p.Q135* 0.40 TCGA-EK-A2PM-01 16 24557495 24557495 G A RBBP6 Missense_Mutation p.D60N 0.25 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-EK-A2PM-01 16 28620630 28620630 C T SULT1A1 Intron 0.25 TCGA-EK-A2PM-01 16 51170285 51170285 C T SALL1 3'UTR 0.30 TCGA-EK-A2PM-01 16 55862856 55862856 T A CES1 Missense_Mutation p.D28V 0.32 tolerated(0.17) benign(0.055) TCGA-EK-A2PM-01 16 55862859 55862859 A T CES1 Missense_Mutation p.V27E 0.14 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PM-01 16 56660709 56660709 G A MT1E Intron 0.63 TCGA-EK-A2PM-01 16 67315956 67315956 G A PLEKHG4 Silent p.L350L 0.73 TCGA-EK-A2PM-01 16 70530310 70530310 C T COG4 Silent p.R502R 0.66 TCGA-EK-A2PM-01 16 85694926 85694926 G A GSE1 Silent p.L605L 0.70 TCGA-EK-A2PM-01 16 89349405 89349405 C T ANKRD11 Missense_Mutation p.R1182K 0.69 benign(0.001) TCGA-EK-A2PM-01 17 10302917 10302917 G A MYH8 Nonsense_Mutation p.Q1269* 0.61 TCGA-EK-A2PM-01 17 16553030 16553030 C G ZNF624 Missense_Mutation p.R10T 0.11 deleterious_low_confidence(0.02) benign(0.035) TCGA-EK-A2PM-01 17 37822478 37822480 CTA TT TCAP 3'UTR 0.39 TCGA-EK-A2PM-01 17 38517354 38517354 G C CTD-2267D19.3 Missense_Mutation p.L37F 0.58 unknown(0) TCGA-EK-A2PM-01 17 38950145 38950145 C G KRT28 Missense_Mutation p.D378H 0.73 deleterious(0.01) possibly_damaging(0.564) TCGA-EK-A2PM-01 17 43197701 43197701 G T PLCD3 Silent p.L225L 0.81 TCGA-EK-A2PM-01 17 45924697 45924697 C G SP6 Missense_Mutation p.E367Q 0.41 deleterious_low_confidence(0.04) benign(0.064) TCGA-EK-A2PM-01 17 46135813 46135813 C T NFE2L1 Missense_Mutation p.L377F 0.46 tolerated(0.16) benign(0.01) TCGA-EK-A2PM-01 17 46627737 46627737 G A HOXB3 Nonsense_Mutation p.Q419* 0.34 TCGA-EK-A2PM-01 17 47301946 47301946 C T PHOSPHO1 Missense_Mutation p.G181R 0.25 deleterious(0) probably_damaging(1) TCGA-EK-A2PM-01 17 48653074 48653074 C G CACNA1G Silent p.L437L 0.32 TCGA-EK-A2PM-01 17 57474850 57474850 G T YPEL2 3'UTR 0.43 TCGA-EK-A2PM-01 17 59760977 59760977 C T BRIP1 Missense_Mutation p.E1144K 0.44 deleterious_low_confidence(0.02) benign(0.126) TCGA-EK-A2PM-01 17 60344530 60344530 G A TBC1D3P2 RNA 0.40 TCGA-EK-A2PM-01 17 61937541 61937541 A T TCAM1P RNA 0.47 TCGA-EK-A2PM-01 17 62007658 62007658 C G CD79B Missense_Mutation p.S70T 0.43 tolerated(0.3) benign(0) TCGA-EK-A2PM-01 17 62078827 62078827 G A C17orf72 Intron 0.44 TCGA-EK-A2PM-01 17 67149465 67149465 C T ABCA10 Missense_Mutation p.E1373K 0.50 tolerated(0.5) benign(0.014) TCGA-EK-A2PM-01 17 72350665 72350665 G T KIF19 Silent p.R891R 0.41 TCGA-EK-A2PM-01 17 74731785 74731785 C G SRSF2 3'UTR 0.39 TCGA-EK-A2PM-01 17 7578534 7578534 C G TP53 Missense_Mutation p.K132N 0.79 deleterious(0) probably_damaging(1) TCGA-EK-A2PM-01 17 76046332 76046332 G A TNRC6C Missense_Mutation p.E397K 0.35 tolerated(0.06) possibly_damaging(0.492) TCGA-EK-A2PM-01 17 76490185 76490185 A C DNAH17 Missense_Mutation p.L2100R 0.81 probably_damaging(0.988) TCGA-EK-A2PM-01 18 13049854 13049854 C G CEP192 Missense_Mutation p.S994C 0.24 deleterious(0) probably_damaging(0.986) TCGA-EK-A2PM-01 18 14105614 14105614 G A ZNF519 Nonsense_Mutation p.Q309* 0.41 TCGA-EK-A2PM-01 18 14851937 14851937 G A ANKRD30B Missense_Mutation p.G1213R 0.45 tolerated(0.08) benign(0.007) TCGA-EK-A2PM-01 18 21512121 21512121 C G LAMA3 Intron 0.40 TCGA-EK-A2PM-01 18 2762231 2762231 C G SMCHD1 Missense_Mutation p.I1521M 0.30 deleterious(0.01) benign(0.333) TCGA-EK-A2PM-01 18 29446845 29446845 C G TRAPPC8 Missense_Mutation p.D853H 0.30 deleterious(0.01) possibly_damaging(0.76) TCGA-EK-A2PM-01 18 30253069 30253069 T A KLHL14 3'UTR 0.17 TCGA-EK-A2PM-01 18 47429194 47429194 C G MYO5B Missense_Mutation p.E861Q 0.72 tolerated(0.09) benign(0.158) TCGA-EK-A2PM-01 18 48723052 48723052 C T MEX3C Silent p.A213A 0.78 TCGA-EK-A2PM-01 18 6914858 6914858 T A ARHGAP28 3'UTR 0.36 TCGA-EK-A2PM-01 19 10230348 10230348 C T EIF3G Missense_Mutation p.E17K 0.36 deleterious(0.02) benign(0.009) TCGA-EK-A2PM-01 19 15052437 15052437 T A OR7C2 Missense_Mutation p.I46N 0.45 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-EK-A2PM-01 19 1556818 1556818 C A MEX3D Nonsense_Mutation p.E234* 0.43 TCGA-EK-A2PM-01 19 16032932 16032932 G A CYP4F11 Missense_Mutation p.L344F 0.40 deleterious(0.01) probably_damaging(0.993) TCGA-EK-A2PM-01 19 18977679 18977679 G A UPF1 3'UTR 0.28 TCGA-EK-A2PM-01 19 36673847 36673847 C T ZNF565 Missense_Mutation p.G341R 0.38 deleterious(0.03) probably_damaging(0.994) TCGA-EK-A2PM-01 19 3738953 3738953 T C TJP3 Silent p.F493F 0.09 TCGA-EK-A2PM-01 19 39664313 39664313 G A PAK4 Missense_Mutation p.R254Q 0.16 tolerated(0.44) benign(0.003) TCGA-EK-A2PM-01 19 40895399 40895399 G C HIPK4 Silent p.L137L 0.35 TCGA-EK-A2PM-01 19 42178510 42178510 C G CEACAM7 3'UTR 0.45 TCGA-EK-A2PM-01 19 44099333 44099333 C T IRGQ Missense_Mutation p.G53D 0.45 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-EK-A2PM-01 19 45395670 45395670 G C TOMM40 Missense_Mutation p.E99Q 0.47 deleterious(0) possibly_damaging(0.803) TCGA-EK-A2PM-01 19 45867377 45867377 C G ERCC2 Missense_Mutation p.R272S 0.57 tolerated(0.22) benign(0.063) TCGA-EK-A2PM-01 19 45977158 45977158 G A FOSB 3'UTR 0.32 TCGA-EK-A2PM-01 19 47658464 47658464 C G SAE1 Silent p.V207V 0.71 TCGA-EK-A2PM-01 19 50105124 50105124 C T PRR12 Silent p.F1574F 0.78 TCGA-EK-A2PM-01 19 55687229 55687229 G A SYT5 Silent p.L130L 0.67 TCGA-EK-A2PM-01 19 57764449 57764449 G C ZNF805 Missense_Mutation p.G88R 0.38 tolerated(0.56) benign(0.009) TCGA-EK-A2PM-01 19 58196731 58196731 C A ZNF551 Missense_Mutation p.N61K 0.34 deleterious(0) benign(0.165) TCGA-EK-A2PM-01 19 58384994 58384994 G A ZNF814 Silent p.I588I 0.29 TCGA-EK-A2PM-01 19 5867194 5867194 G T FUT5 Silent p.P181P 0.46 TCGA-EK-A2PM-01 19 7585681 7585681 C A ZNF358 Missense_Mutation p.P518Q 0.59 deleterious_low_confidence(0.01) benign(0.265) TCGA-EK-A2PM-01 19 7925449 7925449 G C EVI5L Missense_Mutation p.E459D 0.41 tolerated(0.56) benign(0) TCGA-EK-A2PM-01 1 103471840 103471840 G A COL11A1 Missense_Mutation p.P572L 0.39 unknown(0) TCGA-EK-A2PM-01 1 10399865 10399865 C T KIF1B Missense_Mutation p.P1108L 0.37 deleterious(0) probably_damaging(0.997) TCGA-EK-A2PM-01 1 109284418 109284418 G A FNDC7 Missense_Mutation p.E732K 0.33 tolerated(0.2) benign(0.015) TCGA-EK-A2PM-01 1 111777568 111777568 A T CHI3L2 Missense_Mutation p.E123D 0.40 tolerated(0.07) benign(0.014) TCGA-EK-A2PM-01 1 113066771 113066771 C A ST7L 3'UTR 0.43 TCGA-EK-A2PM-01 1 114438007 114438007 T A AP4B1 Missense_Mutation p.T634S 0.24 tolerated(0.43) benign(0.008) TCGA-EK-A2PM-01 1 114447340 114447340 C G AP4B1 5'UTR 0.36 TCGA-EK-A2PM-01 1 114522252 114522252 G A OLFML3 Silent p.E38E 0.55 TCGA-EK-A2PM-01 1 117509918 117509918 C T PTGFRN Silent p.L675L 0.33 TCGA-EK-A2PM-01 1 12409274 12409274 C A VPS13D Missense_Mutation p.H3092N 0.39 benign(0.351) TCGA-EK-A2PM-01 1 150671102 150671102 C T HORMAD1 3'UTR 0.45 TCGA-EK-A2PM-01 1 152882943 152882943 G C IVL Missense_Mutation p.E224Q 0.46 tolerated(0.18) unknown(0) TCGA-EK-A2PM-01 1 155288073 155288073 C G FDPS Silent p.L225L 0.32 TCGA-EK-A2PM-01 1 156051708 156051708 C T MEX3A Missense_Mutation p.D28N 0.44 tolerated_low_confidence(0.17) unknown(0) TCGA-EK-A2PM-01 1 159283820 159283820 T A OR10J3 Silent p.L210L 0.44 TCGA-EK-A2PM-01 1 159283925 159283925 G A OR10J3 Silent p.I175I 0.50 TCGA-EK-A2PM-01 1 159799818 159799818 T A SLAMF8 Missense_Mutation p.L68Q 0.31 tolerated(0.08) benign(0.298) TCGA-EK-A2PM-01 1 161187833 161187833 G A FCER1G Missense_Mutation p.G36E 0.36 deleterious(0) probably_damaging(1) TCGA-EK-A2PM-01 1 161519730 161519730 G T FCGR3A 5'UTR 0.33 TCGA-EK-A2PM-01 1 168511278 168511278 G T XCL2 Missense_Mutation p.S43R 0.32 tolerated(0.52) benign(0.055) TCGA-EK-A2PM-01 1 169510846 169510846 C A F5 Missense_Mutation p.R1161L 0.44 tolerated_low_confidence(1) benign(0) TCGA-EK-A2PM-01 1 169798460 169798460 C G C1orf112 Missense_Mutation p.S395C 0.40 deleterious(0) probably_damaging(0.99) TCGA-EK-A2PM-01 1 176918332 176918332 G A ASTN1 Silent p.L681L 0.52 TCGA-EK-A2PM-01 1 177915626 177915626 G C SEC16B Silent p.L568L 0.23 TCGA-EK-A2PM-01 1 181701777 181701777 G A CACNA1E Missense_Mutation p.R852H 0.61 tolerated(0.18) possibly_damaging(0.522) TCGA-EK-A2PM-01 1 182027076 182027076 G C ZNF648 Missense_Mutation p.H24D 0.20 tolerated_low_confidence(0.06) benign(0.107) TCGA-EK-A2PM-01 1 186645143 186645143 G A PTGS2 Nonsense_Mutation p.Q382* 0.36 TCGA-EK-A2PM-01 1 197124128 197124128 G C ZBTB41 3'UTR 0.27 TCGA-EK-A2PM-01 1 197901135 197901135 G A LHX9 3'Flank 0.16 TCGA-EK-A2PM-01 1 199997032 199997032 A T NR5A2 Silent p.T19T 0.65 TCGA-EK-A2PM-01 1 203458256 203458256 G A PRELP 3'UTR 0.27 TCGA-EK-A2PM-01 1 207083082 207083082 C T FAIM3 Missense_Mutation p.A325T 0.31 tolerated(0.12) benign(0.162) TCGA-EK-A2PM-01 1 211847840 211847840 C G NEK2 Missense_Mutation p.E38Q 0.64 deleterious(0.03) possibly_damaging(0.725) TCGA-EK-A2PM-01 1 22448032 22448032 C T WNT4 Silent p.S117S 0.35 TCGA-EK-A2PM-01 1 228346930 228346930 G A GJC2 3'UTR 0.37 TCGA-EK-A2PM-01 1 228601524 228601524 C T TRIM17 Missense_Mutation p.E167K 0.55 tolerated(0.12) benign(0.321) TCGA-EK-A2PM-01 1 230486791 230486791 C T PGBD5 Silent p.T200T 0.36 TCGA-EK-A2PM-01 1 234565905 234565905 T A TARBP1 Missense_Mutation p.Q846L 0.14 deleterious(0.04) benign(0.205) TCGA-EK-A2PM-01 1 235530759 235530759 C T TBCE 5'UTR 0.28 TCGA-EK-A2PM-01 1 236973854 236973854 C G MTR Missense_Mutation p.S154C 0.08 deleterious(0) probably_damaging(1) TCGA-EK-A2PM-01 1 243260602 243260602 C G RP11-261C10.3 Splice_Site 0.12 TCGA-EK-A2PM-01 1 247063409 247063409 G C AHCTF1 Missense_Mutation p.P473A 0.29 deleterious(0.01) possibly_damaging(0.702) TCGA-EK-A2PM-01 1 29362374 29362374 C G EPB41 Missense_Mutation p.P468A 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-EK-A2PM-01 1 32202035 32202035 A G BAI2 Intron 0.72 TCGA-EK-A2PM-01 1 32834008 32834008 C A BSDC1 Intron 0.78 TCGA-EK-A2PM-01 1 3397219 3397219 G C ARHGEF16 3'UTR 0.52 TCGA-EK-A2PM-01 1 36786216 36786216 G C SH3D21 Missense_Mutation p.R651T 0.18 tolerated(0.63) benign(0) TCGA-EK-A2PM-01 1 43898052 43898052 C G SZT2 Missense_Mutation p.S1738C 0.85 tolerated(0.05) benign(0.064) TCGA-EK-A2PM-01 1 45805588 45805588 G T MUTYH Intron 0.65 TCGA-EK-A2PM-01 1 6614166 6614166 C T NOL9 Splice_Site p.X132_splice 0.39 TCGA-EK-A2PM-01 1 7980827 7980827 G A TNFRSF9 3'UTR 0.59 TCGA-EK-A2PM-01 1 89273084 89273084 C T PKN2 Missense_Mutation p.S631L 0.43 tolerated(0.27) benign(0.007) TCGA-EK-A2PM-01 1 89273099 89273099 G T PKN2 Missense_Mutation p.S636I 0.48 tolerated(0.4) benign(0.001) TCGA-EK-A2PM-01 1 92613279 92613279 G T BTBD8 Missense_Mutation p.R353I 0.37 deleterious(0) possibly_damaging(0.671) TCGA-EK-A2PM-01 20 1162032 1162032 C T TMEM74B Silent p.G77G 0.45 TCGA-EK-A2PM-01 20 18122908 18122908 C T PET117 Silent p.N51N 0.26 TCGA-EK-A2PM-01 20 2644581 2644581 G A IDH3B Missense_Mutation p.S36L 0.43 tolerated(0.64) benign(0) TCGA-EK-A2PM-01 20 30915357 30915357 A G KIF3B Splice_Site p.X621_splice 0.36 TCGA-EK-A2PM-01 20 31035550 31035550 C G C20orf112 Missense_Mutation p.S387T 0.23 tolerated(0.08) benign(0.087) TCGA-EK-A2PM-01 20 34304707 34304707 C T RBM39 Missense_Mutation p.M282I 0.27 tolerated(0.41) benign(0.055) TCGA-EK-A2PM-01 20 35879555 35879555 G C GHRH 3'UTR 0.43 TCGA-EK-A2PM-01 20 36874342 36874342 C T KIAA1755 Missense_Mutation p.E64K 0.51 deleterious(0.01) probably_damaging(0.93) TCGA-EK-A2PM-01 20 3728949 3728949 G A HSPA12B Missense_Mutation p.R254H 0.11 deleterious(0.04) possibly_damaging(0.629) TCGA-EK-A2PM-01 20 44688125 44688125 C A SLC12A5 3'Flank 0.33 TCGA-EK-A2PM-01 20 57415400 57415400 C A RP4-806M20.3 5'Flank 0.38 TCGA-EK-A2PM-01 20 57766154 57766154 C G ZNF831 Missense_Mutation p.P27R 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-EK-A2PM-01 21 33647158 33647158 A C MIS18A Silent p.R128R 0.20 TCGA-EK-A2PM-01 21 41496132 41496132 G C DSCAM Missense_Mutation p.P1229R 0.60 deleterious(0.03) benign(0.248) TCGA-EK-A2PM-01 21 45789054 45789054 C A TRPM2 Intron 0.39 TCGA-EK-A2PM-01 21 45919218 45919218 C T TSPEAR 3'UTR 0.43 TCGA-EK-A2PM-01 22 21174094 21174094 G C PI4KA Silent p.L208L 0.29 TCGA-EK-A2PM-01 22 22453479 22453479 C - IGLV8-61 Frame_Shift_Del p.Y75* 0.26 TCGA-EK-A2PM-01 22 22931029 22931029 G A IGLV2-33 Missense_Mutation p.R75Q 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-EK-A2PM-01 22 24236647 24236647 G C AP000350.4 3'UTR 0.46 TCGA-EK-A2PM-01 22 26343787 26343809 TTGCTCAGGTAGTGAATGAGACC - MYO18B Splice_Site p.X1915_splice 0.35 TCGA-EK-A2PM-01 22 29456492 29456492 C - C22orf31 Frame_Shift_Del p.A115Pfs*40 0.33 TCGA-EK-A2PM-01 22 30517978 30517978 C T HORMAD2 Silent p.L198L 0.48 TCGA-EK-A2PM-01 22 36661428 36661428 C T APOL1 Silent p.L198L 0.69 TCGA-EK-A2PM-01 22 39085337 39085337 G T JOSD1 Missense_Mutation p.T93N 0.32 tolerated(0.47) possibly_damaging(0.834) TCGA-EK-A2PM-01 22 41562645 41562645 G T EP300 Missense_Mutation p.R1283S 0.52 possibly_damaging(0.672) TCGA-EK-A2PM-01 22 50719806 50719806 C A PLXNB2 Silent p.V1215V 0.39 TCGA-EK-A2PM-01 22 50719808 50719808 C A PLXNB2 Missense_Mutation p.V1215L 0.39 tolerated(0.1) benign(0.002) TCGA-EK-A2PM-01 2 100343566 100343566 C T AFF3 Missense_Mutation p.S380N 0.47 tolerated(0.26) benign(0.006) TCGA-EK-A2PM-01 2 101619193 101619193 G T RPL31 Missense_Mutation p.K10N 0.45 deleterious(0.03) benign(0.167) TCGA-EK-A2PM-01 2 109098845 109098845 G C GCC2 Missense_Mutation p.A1095P 0.42 tolerated(0.06) benign(0.003) TCGA-EK-A2PM-01 2 116593781 116593781 C T DPP10 Missense_Mutation p.L671F 0.25 tolerated(0.11) benign(0.026) TCGA-EK-A2PM-01 2 121726386 121726386 G A GLI2 Missense_Mutation p.R247Q 0.42 deleterious(0.02) probably_damaging(0.99) TCGA-EK-A2PM-01 2 132288392 132288392 C G CCDC74A Missense_Mutation p.S179C 0.39 deleterious(0.03) probably_damaging(0.986) TCGA-EK-A2PM-01 2 135214288 135214288 C T TMEM163 Silent p.%3D 0.16 TCGA-EK-A2PM-01 2 135712250 135712250 T G CCNT2 3'UTR 0.45 TCGA-EK-A2PM-01 2 135888131 135888131 A G RAB3GAP1 Missense_Mutation p.D359G 0.23 deleterious(0) benign(0.354) TCGA-EK-A2PM-01 2 137988727 137988727 T C THSD7B Missense_Mutation p.C613R 0.40 deleterious(0) probably_damaging(0.919) TCGA-EK-A2PM-01 2 140990271 140990271 A T LRP1B 3'UTR 0.33 TCGA-EK-A2PM-01 2 162834263 162834263 C T SLC4A10 3'UTR 0.48 TCGA-EK-A2PM-01 2 168115064 168115064 G A XIRP2 3'UTR 0.38 TCGA-EK-A2PM-01 2 168115687 168115687 A T XIRP2 3'UTR 0.37 TCGA-EK-A2PM-01 2 170060714 170060714 C A LRP2 Missense_Mutation p.A2595S 0.47 benign(0.023) TCGA-EK-A2PM-01 2 172844210 172844210 G A HAT1 Missense_Mutation p.M342I 0.47 tolerated(0.71) benign(0.014) TCGA-EK-A2PM-01 2 179345543 179345543 C T PLEKHA3 5'UTR 0.17 TCGA-EK-A2PM-01 2 189856948 189856948 T A COL3A1 Silent p.G330G 0.49 TCGA-EK-A2PM-01 2 189875551 189875551 G A COL3A1 Missense_Mutation p.E1397K 0.27 unknown(0) TCGA-EK-A2PM-01 2 189877174 189877174 G C COL3A1 3'UTR 0.31 TCGA-EK-A2PM-01 2 203630539 203630539 C A FAM117B 3'UTR 0.23 TCGA-EK-A2PM-01 2 207170956 207170956 C T ZDBF2 Silent p.T568T 0.37 TCGA-EK-A2PM-01 2 208633032 208633032 C T FZD5 Silent p.E144E 0.75 TCGA-EK-A2PM-01 2 210594966 210594966 G T MAP2 Nonsense_Mutation p.E1777* 0.28 TCGA-EK-A2PM-01 2 216226710 216226710 G A FN1 Silent p.Y2448Y 0.54 TCGA-EK-A2PM-01 2 216239952 216239952 C T FN1 Missense_Mutation p.E2048K 0.50 tolerated(0.29) probably_damaging(0.998) TCGA-EK-A2PM-01 2 227895255 227895255 C T COL4A4 Missense_Mutation p.D1293N 0.47 unknown(0) TCGA-EK-A2PM-01 2 228883518 228883518 G T SPHKAP Missense_Mutation p.H684Q 0.37 tolerated(0.29) benign(0.004) TCGA-EK-A2PM-01 2 24205898 24205898 A T UBXN2A Silent p.L140L 0.73 TCGA-EK-A2PM-01 2 28863863 28863863 C G PLB1 Missense_Mutation p.S1390C 0.62 deleterious(0) probably_damaging(0.928) TCGA-EK-A2PM-01 2 37444136 37444136 G T CEBPZ Silent p.T733T 0.43 TCGA-EK-A2PM-01 2 46602874 46602874 C A EPAS1 Missense_Mutation p.A311E 0.51 deleterious(0) probably_damaging(1) TCGA-EK-A2PM-01 2 68753297 68753297 G A APLF Missense_Mutation p.E243K 0.31 tolerated(0.09) benign(0.014) TCGA-EK-A2PM-01 2 69304566 69304566 T A ANTXR1 Missense_Mutation p.D196E 0.33 tolerated(0.75) benign(0.012) TCGA-EK-A2PM-01 2 69304567 69304567 C T ANTXR1 Missense_Mutation p.H197Y 0.33 tolerated(0.06) possibly_damaging(0.678) TCGA-EK-A2PM-01 2 88748104 88748104 C G FOXI3 RNA 0.43 TCGA-EK-A2PM-01 2 9618415 9618415 C T IAH1 Missense_Mutation p.P67S 0.40 deleterious(0.01) probably_damaging(0.912) TCGA-EK-A2PM-01 2 96950262 96950262 G A SNRNP200 Missense_Mutation p.T1409I 0.42 deleterious(0.02) probably_damaging(0.99) TCGA-EK-A2PM-01 2 97216852 97216852 C T ARID5A Missense_Mutation p.T196I 0.35 deleterious(0.04) benign(0.01) TCGA-EK-A2PM-01 3 10370260 10370260 C A ATP2B2 3'UTR 0.14 TCGA-EK-A2PM-01 3 108868763 108868763 A G RP11-59E19.1 RNA 0.42 TCGA-EK-A2PM-01 3 11600915 11600915 C T VGLL4 Silent p.V170V 0.48 TCGA-EK-A2PM-01 3 122283436 122283436 C T DTX3L Missense_Mutation p.R55W 0.40 tolerated(0.13) benign(0.001) TCGA-EK-A2PM-01 3 122545861 122545861 G C DIRC2 Missense_Mutation p.E218Q 0.43 tolerated(0.57) benign(0.011) TCGA-EK-A2PM-01 3 129151414 129151414 C A MBD4 Nonsense_Mutation p.E533* 0.38 TCGA-EK-A2PM-01 3 136708308 136708308 G C IL20RB Missense_Mutation p.E144D 0.36 tolerated(0.15) benign(0.013) TCGA-EK-A2PM-01 3 142098921 142098921 C T XRN1 Intron 0.36 TCGA-EK-A2PM-01 3 142775827 142775827 G T U2SURP 3'UTR 0.45 TCGA-EK-A2PM-01 3 147105565 147105565 A T ZIC4 3'UTR 0.13 TCGA-EK-A2PM-01 3 149458778 149458778 A G COMMD2 3'UTR 0.09 TCGA-EK-A2PM-01 3 151046611 151046611 A C P2RY13 Missense_Mutation p.F78C 0.39 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PM-01 3 151095907 151095907 G A MED12L Missense_Mutation p.G1440E 0.25 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PM-01 3 15686759 15686759 C G BTD Missense_Mutation p.L466V 0.20 tolerated(0.29) benign(0.137) TCGA-EK-A2PM-01 3 157296281 157296281 G A C3orf55 Intron 0.32 TCGA-EK-A2PM-01 3 160474021 160474021 C T PPM1L 5'UTR 0.41 TCGA-EK-A2PM-01 3 16216965 16216965 C A GALNT15 Missense_Mutation p.Q103K 0.46 tolerated(0.2) benign(0) TCGA-EK-A2PM-01 3 16216966 16216966 A G GALNT15 Missense_Mutation p.Q103R 0.47 tolerated(1) benign(0) TCGA-EK-A2PM-01 3 172536477 172536477 C G ECT2 Intron 0.39 TCGA-EK-A2PM-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.38 deleterious(0.02) probably_damaging(0.959) TCGA-EK-A2PM-01 3 182988037 182988037 C G B3GNT5 Missense_Mutation p.Q151E 0.37 tolerated(0.3) benign(0.004) TCGA-EK-A2PM-01 3 184295445 184295445 G C EPHB3 Splice_Site p.X494_splice 0.24 TCGA-EK-A2PM-01 3 195702683 195702683 C T SDHAP1 RNA 0.09 TCGA-EK-A2PM-01 3 196547323 196547323 C T PAK2 Missense_Mutation p.P412L 0.35 deleterious(0) probably_damaging(1) TCGA-EK-A2PM-01 3 27387639 27387639 A G NEK10 Silent p.G67G 0.38 TCGA-EK-A2PM-01 3 35785442 35785442 G A ARPP21 Missense_Mutation p.A674T 0.31 tolerated(0.46) benign(0.002) TCGA-EK-A2PM-01 3 38296854 38296854 C T OXSR1 3'UTR 0.40 TCGA-EK-A2PM-01 3 39154048 39154048 G C TTC21A Missense_Mutation p.D179H 0.34 tolerated(0.08) probably_damaging(1) TCGA-EK-A2PM-01 3 40558018 40558018 C A ZNF620 Missense_Mutation p.N311K 0.36 tolerated(1) benign(0.001) TCGA-EK-A2PM-01 3 42735141 42735141 G A HHATL Silent p.L406L 0.38 TCGA-EK-A2PM-01 3 42799773 42799773 T A CCDC13 Missense_Mutation p.Q22L 0.37 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PM-01 3 44489008 44489008 C T ZNF445 Missense_Mutation p.A719T 0.35 tolerated(1) unknown(0) TCGA-EK-A2PM-01 3 45077228 45077228 G A CLEC3B Missense_Mutation p.E141K 0.37 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PM-01 3 46759249 46759249 G A PRSS50 Silent p.A22A 0.45 TCGA-EK-A2PM-01 3 48605318 48605318 G A COL7A1 Missense_Mutation p.R2628W 0.32 probably_damaging(1) TCGA-EK-A2PM-01 3 48612260 48612260 T A COL7A1 Missense_Mutation p.E2106D 0.56 unknown(0) TCGA-EK-A2PM-01 3 55922488 55922488 G A ERC2 Silent p.A831A 0.40 TCGA-EK-A2PM-01 3 62518688 62518688 C T CADPS Missense_Mutation p.A717T 0.33 deleterious(0.04) possibly_damaging(0.499) TCGA-EK-A2PM-01 3 74535632 74535632 G T CNTN3 Missense_Mutation p.S111R 0.47 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PM-01 3 85008741 85008741 C A CADM2 5'UTR 0.34 TCGA-EK-A2PM-01 3 99865816 99865816 G A CMSS1 Splice_Site p.X22_splice 0.56 TCGA-EK-A2PM-01 4 114302674 114302674 C T ANK2 3'UTR 0.38 TCGA-EK-A2PM-01 4 119554526 119554526 G A RP11-384K6.6 RNA 0.67 TCGA-EK-A2PM-01 4 126371575 126371575 G T FAT4 Missense_Mutation p.G3135V 0.68 probably_damaging(0.93) TCGA-EK-A2PM-01 4 174223308 174223308 C T GALNT7 Missense_Mutation p.S420L 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A2PM-01 4 174244826 174244826 G C GALNT7 3'UTR 0.57 TCGA-EK-A2PM-01 4 41648644 41648644 G A LIMCH1 Missense_Mutation p.E467K 0.70 deleterious(0.01) probably_damaging(0.984) TCGA-EK-A2PM-01 4 6051584 6051584 C T JAKMIP1 Missense_Mutation p.E642K 0.74 deleterious(0) benign(0.423) TCGA-EK-A2PM-01 4 85888148 85888148 C T WDFY3 5'Flank 0.83 TCGA-EK-A2PM-01 5 100143111 100143111 T - ST8SIA4 3'UTR 0.29 TCGA-EK-A2PM-01 5 100143641 100143641 C G ST8SIA4 3'UTR 0.38 TCGA-EK-A2PM-01 5 101811489 101811489 C G SLCO6A1 Missense_Mutation p.E271Q 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-EK-A2PM-01 5 102613688 102613688 T A C5orf30 3'UTR 0.48 TCGA-EK-A2PM-01 5 121786382 121786382 G T SNCAIP Nonsense_Mutation p.E614* 0.69 TCGA-EK-A2PM-01 5 133326815 133326815 C G VDAC1 Missense_Mutation p.E50Q 0.48 deleterious(0) possibly_damaging(0.724) TCGA-EK-A2PM-01 5 135277003 135277003 T C FBXL21 RNA 0.63 TCGA-EK-A2PM-01 5 137801195 137801195 G T EGR1 5'UTR 0.64 TCGA-EK-A2PM-01 5 137847214 137847214 G C ETF1 Missense_Mutation p.S271C 0.56 tolerated(0.06) possibly_damaging(0.876) TCGA-EK-A2PM-01 5 138941930 138941930 C T UBE2D2 Intron 0.52 TCGA-EK-A2PM-01 5 139745464 139745502 ACCCGGCAGGGAGGCCACCCTCGTGGCCCTGGCTGTCAT - SLC4A9 In_Frame_Del p.R611_T623del 0.72 TCGA-EK-A2PM-01 5 140237074 140237074 G A PCDHA10 Missense_Mutation p.A481T 0.51 deleterious_low_confidence(0.02) benign(0.292) TCGA-EK-A2PM-01 5 140256419 140256419 G A PCDHA12 Silent p.A454A 0.53 TCGA-EK-A2PM-01 5 140559613 140559613 C A PCDHB8 Silent p.G666G 0.49 TCGA-EK-A2PM-01 5 140725749 140725749 C T PCDHGA3 Missense_Mutation p.R717W 0.23 tolerated_low_confidence(0.1) benign(0.15) TCGA-EK-A2PM-01 5 141036112 141036112 G C ARAP3 Missense_Mutation p.L1250V 0.46 tolerated(1) benign(0.124) TCGA-EK-A2PM-01 5 14741993 14741993 T G ANKH Silent p.T318T 0.37 TCGA-EK-A2PM-01 5 148719685 148719685 T G AFAP1L1 3'UTR 0.24 TCGA-EK-A2PM-01 5 149652711 149652711 G A CAMK2A Missense_Mutation p.S25L 0.35 deleterious_low_confidence(0) possibly_damaging(0.638) TCGA-EK-A2PM-01 5 160114820 160114820 C G ATP10B Missense_Mutation p.E88Q 0.39 tolerated(0.06) possibly_damaging(0.786) TCGA-EK-A2PM-01 5 168233468 168233468 C T SLIT3 Silent p.P306P 0.44 TCGA-EK-A2PM-01 5 169805641 169805641 G A KCNMB1 3'UTR 0.21 TCGA-EK-A2PM-01 5 171766545 171766545 G C SH3PXD2B Missense_Mutation p.L522V 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A2PM-01 5 32091009 32091009 G C PDZD2 Silent p.L2485L 0.44 TCGA-EK-A2PM-01 5 35876635 35876635 T A IL7R 3'UTR 0.30 TCGA-EK-A2PM-01 5 37364401 37364401 G C NUP155 Missense_Mutation p.I81M 0.36 tolerated(0.19) benign(0.403) TCGA-EK-A2PM-01 5 38481096 38481096 C T LIFR 3'UTR 0.28 TCGA-EK-A2PM-01 5 476336 476336 C T SLC9A3 Missense_Mutation p.R683Q 0.44 deleterious(0.03) benign(0.296) TCGA-EK-A2PM-01 5 50690133 50690133 A T ISL1 3'UTR 0.21 TCGA-EK-A2PM-01 5 5463891 5463891 G A KIAA0947 Missense_Mutation p.E1482K 0.51 deleterious(0.02) possibly_damaging(0.853) TCGA-EK-A2PM-01 5 90052844 90052844 G A GPR98 Missense_Mutation p.V3936I 0.35 benign(0.204) TCGA-EK-A2PM-01 6 10402730 10402730 A C TFAP2A Missense_Mutation p.V293G 0.51 deleterious(0) probably_damaging(0.999) TCGA-EK-A2PM-01 6 105474188 105474188 G C LIN28B Missense_Mutation p.E72Q 0.42 tolerated(0.07) possibly_damaging(0.823) TCGA-EK-A2PM-01 6 134824015 134824015 C T LINC01010 RNA 0.90 TCGA-EK-A2PM-01 6 145093095 145093095 C T UTRN Nonsense_Mutation p.Q2850* 0.65 TCGA-EK-A2PM-01 6 148846469 148846469 C T SASH1 Silent p.L418L 0.72 TCGA-EK-A2PM-01 6 20480121 20480121 C G E2F3 Silent p.L146L 0.61 TCGA-EK-A2PM-01 6 26020749 26020749 C G HIST1H3A Missense_Mutation p.S11C 0.27 deleterious_low_confidence(0) benign(0.018) TCGA-EK-A2PM-01 6 26216532 26216532 C G HIST1H2BG Missense_Mutation p.E114Q 0.36 deleterious_low_confidence(0.02) benign(0.113) TCGA-EK-A2PM-01 6 28053437 28053437 C G ZNF165 Missense_Mutation p.S60C 0.38 deleterious(0.03) possibly_damaging(0.905) TCGA-EK-A2PM-01 6 29141372 29141372 G A OR2J2 5'UTR 0.33 TCGA-EK-A2PM-01 6 29761307 29761307 A G HLA-V Intron 0.09 TCGA-EK-A2PM-01 6 30615336 30615336 G T C6orf136 Missense_Mutation p.G110W 0.52 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EK-A2PM-01 6 30917602 30917602 C T DPCR1 Missense_Mutation p.T454I 0.25 deleterious(0) unknown(0) TCGA-EK-A2PM-01 6 32134314 32134314 C G EGFL8 Silent p.L47L 0.59 TCGA-EK-A2PM-01 6 33168158 33168158 G A RXRB Silent p.V32V 0.43 TCGA-EK-A2PM-01 6 34844932 34844932 C T UHRF1BP1 3'UTR 0.55 TCGA-EK-A2PM-01 6 36198980 36198980 C T BRPF3 3'UTR 0.52 TCGA-EK-A2PM-01 6 36198995 36198995 C T BRPF3 3'UTR 0.50 TCGA-EK-A2PM-01 6 37336697 37336697 A G RNF8 Silent p.K226K 0.17 TCGA-EK-A2PM-01 6 38790763 38790763 C T DNAH8 Nonsense_Mutation p.Q1008* 0.52 TCGA-EK-A2PM-01 6 41304003 41304003 G C NCR2 Missense_Mutation p.W77C 0.32 deleterious(0) benign(0.032) TCGA-EK-A2PM-01 6 4611411 4611411 A C RP4-529N6.1 RNA 0.19 TCGA-EK-A2PM-01 6 49802963 49802963 G C CRISP1 3'UTR 0.49 TCGA-EK-A2PM-01 6 53761333 53761333 C T LRRC1 Missense_Mutation p.L162F 0.43 deleterious(0.03) possibly_damaging(0.678) TCGA-EK-A2PM-01 6 7182252 7182252 C A RREB1 Missense_Mutation p.S36R 0.40 deleterious(0.01) possibly_damaging(0.802) TCGA-EK-A2PM-01 6 86324748 86324748 C G SYNCRIP Missense_Mutation p.R533T 0.46 tolerated(0.48) unknown(0) TCGA-EK-A2PM-01 6 87925755 87925755 G T ZNF292 Missense_Mutation p.L101F 0.39 tolerated(0.2) benign(0.049) TCGA-EK-A2PM-01 6 88853279 88853279 G T CNR1 3'UTR 0.52 TCGA-EK-A2PM-01 6 96651604 96651604 G C FUT9 Missense_Mutation p.W191C 0.52 deleterious(0) probably_damaging(1) TCGA-EK-A2PM-01 6 99284265 99284265 C A POU3F2 3'UTR 0.42 TCGA-EK-A2PM-01 7 100170081 100170081 C G SAP25 Silent p.L143L 0.31 TCGA-EK-A2PM-01 7 100198208 100198208 C G FBXO24 Missense_Mutation p.L515V 0.09 tolerated_low_confidence(0.12) benign(0.364) TCGA-EK-A2PM-01 7 100482406 100482406 G T SRRT Missense_Mutation p.G330C 0.45 deleterious(0.04) benign(0.284) TCGA-EK-A2PM-01 7 100482407 100482407 G T SRRT Missense_Mutation p.G330V 0.44 tolerated(0.28) benign(0.021) TCGA-EK-A2PM-01 7 100849549 100849549 G C PLOD3 3'UTR 0.38 TCGA-EK-A2PM-01 7 103191723 103191723 A T RELN Silent p.T2031T 0.34 TCGA-EK-A2PM-01 7 107398799 107398799 G C CBLL1 Missense_Mutation p.E218Q 0.35 deleterious(0.02) benign(0.098) TCGA-EK-A2PM-01 7 1097783 1097783 C T GPR146 Missense_Mutation p.S211F 0.57 tolerated(0.14) benign(0.076) TCGA-EK-A2PM-01 7 116861992 116861992 C G ST7 Nonsense_Mutation p.S505* 0.30 TCGA-EK-A2PM-01 7 117251838 117251838 A G CFTR Missense_Mutation p.T1115A 0.53 tolerated(1) benign(0.003) TCGA-EK-A2PM-01 7 120373062 120373062 C A KCND2 Silent p.S407S 0.51 TCGA-EK-A2PM-01 7 122338409 122338409 A G RNF133 Silent p.N188N 0.33 TCGA-EK-A2PM-01 7 124404620 124404620 C T GPR37 Silent p.G137G 0.54 TCGA-EK-A2PM-01 7 126409937 126409937 G A GRM8 Missense_Mutation p.R447W 0.49 deleterious(0.01) possibly_damaging(0.88) TCGA-EK-A2PM-01 7 128097775 128097775 C T HILPDA 3'UTR 0.33 TCGA-EK-A2PM-01 7 135047436 135047436 C G CNOT4 3'UTR 0.54 TCGA-EK-A2PM-01 7 138745836 138745836 C T ZC3HAV1 Missense_Mutation p.R681K 0.36 deleterious(0) possibly_damaging(0.815) TCGA-EK-A2PM-01 7 143792960 143792960 G A OR2A12 Missense_Mutation p.A254T 0.75 deleterious(0.02) possibly_damaging(0.477) TCGA-EK-A2PM-01 7 150557683 150557683 G C AOC1 Missense_Mutation p.E651Q 0.80 tolerated(0.17) possibly_damaging(0.541) TCGA-EK-A2PM-01 7 1511263 1511263 G A INTS1 Silent p.L2067L 0.59 TCGA-EK-A2PM-01 7 21554048 21554048 A C SP4 3'UTR 0.22 TCGA-EK-A2PM-01 7 37936496 37936496 G A NME8 Silent p.L523L 0.12 TCGA-EK-A2PM-01 7 41729812 41729812 G A INHBA Silent p.D239D 0.50 TCGA-EK-A2PM-01 7 42004460 42004460 A T GLI3 Missense_Mutation p.L1404Q 0.27 tolerated_low_confidence(0.45) benign(0.009) TCGA-EK-A2PM-01 7 47869022 47869022 C A PKD1L1 Splice_Site p.X2245_splice 0.12 TCGA-EK-A2PM-01 7 5104371 5104371 C G RBAK Silent p.P428P 0.24 TCGA-EK-A2PM-01 7 72856672 72856672 G C BAZ1B Missense_Mutation p.L1436V 0.68 tolerated(0.55) benign(0.214) TCGA-EK-A2PM-01 7 91641860 91641860 C G AKAP9 Missense_Mutation p.L1146V 0.43 probably_damaging(0.987) TCGA-EK-A2PM-01 7 94139496 94139496 G T CASD1 Missense_Mutation p.A34S 0.26 tolerated(0.2) benign(0.004) TCGA-EK-A2PM-01 8 120583068 120583068 G C ENPP2 Silent p.L650L 0.33 TCGA-EK-A2PM-01 8 139160891 139160891 T A FAM135B Missense_Mutation p.K1107M 0.16 deleterious(0) probably_damaging(0.928) TCGA-EK-A2PM-01 8 144460463 144460463 G A RHPN1 Missense_Mutation p.E136K 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-EK-A2PM-01 8 146005632 146005632 C T ZNF34 5'UTR 0.14 TCGA-EK-A2PM-01 8 22105764 22105764 G C POLR3D Missense_Mutation p.Q153H 0.72 tolerated(0.16) benign(0.001) TCGA-EK-A2PM-01 8 22419414 22419414 A G SORBS3 Missense_Mutation p.H185R 0.57 tolerated(0.54) benign(0) TCGA-EK-A2PM-01 8 37701136 37701136 C T BRF2 3'UTR 0.62 TCGA-EK-A2PM-01 8 41367967 41367967 G C GOLGA7 3'UTR 0.21 TCGA-EK-A2PM-01 8 42038032 42038032 G C PLAT Missense_Mutation p.S354C 0.52 deleterious(0) probably_damaging(0.992) TCGA-EK-A2PM-01 8 42177143 42177143 G T IKBKB Missense_Mutation p.Q519H 0.43 deleterious(0) possibly_damaging(0.759) TCGA-EK-A2PM-01 8 57219286 57219286 A G SDR16C5 Missense_Mutation p.I220T 0.30 tolerated(0.05) possibly_damaging(0.886) TCGA-EK-A2PM-01 8 67064640 67064640 C T TRIM55 Silent p.G338G 0.54 TCGA-EK-A2PM-01 8 69699708 69699708 C T C8orf34 Missense_Mutation p.H496Y 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EK-A2PM-01 8 73849925 73849925 G T KCNB2 Nonsense_Mutation p.G779* 0.21 TCGA-EK-A2PM-01 8 74203306 74203306 G A RPL7 Silent p.I240I 0.32 TCGA-EK-A2PM-01 8 80679867 80679867 G T HEY1 Nonsense_Mutation p.S11* 0.28 TCGA-EK-A2PM-01 8 96167328 96167328 G A PLEKHF2 3'UTR 0.12 TCGA-EK-A2PM-01 9 100819031 100819031 C A NANS 5'UTR 0.13 TCGA-EK-A2PM-01 9 100897207 100897207 G T CORO2A Missense_Mutation p.L117M 0.43 deleterious(0.02) benign(0.209) TCGA-EK-A2PM-01 9 112899896 112899896 G A PALM2-AKAP2 Missense_Mutation p.R691K 0.26 tolerated(0.64) benign(0.006) TCGA-EK-A2PM-01 9 113547810 113547810 A C MUSK Missense_Mutation p.E530D 0.37 tolerated(0.2) benign(0.242) TCGA-EK-A2PM-01 9 124736340 124736340 T A TTLL11 Missense_Mutation p.I567F 0.40 deleterious(0) probably_damaging(0.991) TCGA-EK-A2PM-01 9 125866223 125866223 C T RABGAP1 3'UTR 0.37 TCGA-EK-A2PM-01 9 127674285 127674285 C G GOLGA1 Missense_Mutation p.E288D 0.39 tolerated(0.21) benign(0.049) TCGA-EK-A2PM-01 9 129157918 129157918 C G MVB12B Missense_Mutation p.Q202E 0.38 tolerated(0.45) benign(0.004) TCGA-EK-A2PM-01 9 130263375 130263375 G A LRSAM1 Missense_Mutation p.E667K 0.42 tolerated(0.51) possibly_damaging(0.529) TCGA-EK-A2PM-01 9 131765678 131765678 C T NUP188 Missense_Mutation p.S1460F 0.35 deleterious(0) probably_damaging(0.998) TCGA-EK-A2PM-01 9 132572519 132572519 G C TOR1B 3'UTR 0.56 TCGA-EK-A2PM-01 9 132627642 132627642 C G USP20 Missense_Mutation p.F224L 0.14 deleterious(0) probably_damaging(0.995) TCGA-EK-A2PM-01 9 132640638 132640638 G A USP20 Missense_Mutation p.E811K 0.52 tolerated(0.06) probably_damaging(0.95) TCGA-EK-A2PM-01 9 135073664 135073664 C T NTNG2 Silent p.F175F 0.19 TCGA-EK-A2PM-01 9 136214954 136214954 C G MED22 5'Flank 0.39 TCGA-EK-A2PM-01 9 136308556 136308556 G A ADAMTS13 Missense_Mutation p.R765Q 0.57 tolerated(0.15) possibly_damaging(0.627) TCGA-EK-A2PM-01 9 139096823 139096823 C T LHX3 5'Flank 0.42 TCGA-EK-A2PM-01 9 139283032 139283032 G C SNAPC4 Missense_Mutation p.S329R 0.34 deleterious(0) probably_damaging(0.977) TCGA-EK-A2PM-01 9 139298550 139298550 G A SDCCAG3 Nonsense_Mutation p.Q389* 0.35 TCGA-EK-A2PM-01 9 139302363 139302363 G C SDCCAG3 Missense_Mutation p.A106G 0.29 deleterious(0.01) possibly_damaging(0.759) TCGA-EK-A2PM-01 9 21971096 21971096 C T CDKN2A Missense_Mutation p.E88K 0.89 deleterious(0.04) probably_damaging(0.918) TCGA-EK-A2PM-01 9 32633525 32633525 G C TAF1L Missense_Mutation p.R685G 0.72 deleterious(0) probably_damaging(0.973) TCGA-EK-A2PM-01 9 328092 328092 C T DOCK8 Missense_Mutation p.S322L 0.63 tolerated(0.59) benign(0.027) TCGA-EK-A2PM-01 9 36162779 36162779 T A GLIPR2 3'UTR 0.33 TCGA-EK-A2PM-01 9 36336803 36336803 C G RNF38 3'UTR 0.33 TCGA-EK-A2PM-01 9 67785055 67785055 G A FAM27E3 3'UTR 0.26 TCGA-EK-A2PM-01 9 71002420 71002420 C T PGM5 Missense_Mutation p.R205W 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-EK-A2PM-01 9 94877647 94877647 C A SPTLC1 Silent p.A2A 0.42 TCGA-EK-A2PM-01 X 100503575 100503575 G T DRP2 Missense_Mutation p.K509N 0.32 deleterious(0) possibly_damaging(0.816) TCGA-EK-A2PM-01 X 103031869 103031869 C T PLP1 5'UTR 0.33 TCGA-EK-A2PM-01 X 107909764 107909764 G A COL4A5 Missense_Mutation p.E1165K 0.22 unknown(0) TCGA-EK-A2PM-01 X 144905849 144905849 G A SLITRK2 Missense_Mutation p.G636R 0.48 deleterious(0) probably_damaging(0.943) TCGA-EK-A2PM-01 X 152158873 152158873 G T PNMA5 Missense_Mutation p.P424T 0.42 tolerated(0.2) possibly_damaging(0.824) TCGA-EK-A2PM-01 X 152935959 152935959 G T PNCK Missense_Mutation p.R412S 0.40 tolerated(0.19) benign(0.013) TCGA-EK-A2PM-01 X 23019522 23019522 G C DDX53 Missense_Mutation p.E450Q 0.40 deleterious(0.05) possibly_damaging(0.601) TCGA-EK-A2PM-01 X 24523381 24523381 C A PDK3 Silent p.I187I 0.28 TCGA-EK-A2PM-01 X 37027105 37027105 T A FAM47C Missense_Mutation p.S208T 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-EK-A2PM-01 X 48979986 48979986 C T GPKOW Silent p.R29R 0.24 TCGA-EK-A2PM-01 X 49957835 49957835 T A AKAP4 Missense_Mutation p.Q510L 0.21 deleterious(0.01) possibly_damaging(0.907) TCGA-EK-A2PM-01 X 54578806 54578806 G C GNL3L Missense_Mutation p.M421I 0.34 deleterious(0.03) probably_damaging(0.958) TCGA-EK-A2PM-01 X 64138824 64138824 C G ZC4H2 Intron 0.21 TCGA-EK-A2PM-01 X 64724691 64724691 G A ZC3H12B 3'UTR 0.19 TCGA-EK-A2PM-01 X 68751001 68751001 C G FAM155B 3'UTR 0.23 TCGA-EK-A2PM-01 X 77224147 77224147 G A PGAM4 3'UTR 0.35 TCGA-EK-A2PM-01 X 79699425 79699425 A T FAM46D 3'UTR 0.17 TCGA-EK-A2PM-01 X 9727434 9727434 G A GPR143 Silent p.F131F 0.36 TCGA-EK-A2R7-01 10 103372098 103372098 C T FBXW4 Missense_Mutation p.V325I 0.10 tolerated(0.06) benign(0.013) TCGA-EK-A2R7-01 10 48388257 48388257 C T RBP3 Missense_Mutation p.G874E 0.08 deleterious(0) probably_damaging(0.982) TCGA-EK-A2R7-01 10 69934090 69934090 G C MYPN Missense_Mutation p.L747F 0.07 tolerated(1) benign(0.002) TCGA-EK-A2R7-01 10 89720799 89720802 TACT - PTEN Frame_Shift_Del p.T319* 0.73 TCGA-EK-A2R7-01 11 103025519 103025519 C T DYNC2H1 Missense_Mutation p.S1185L 0.36 benign(0.038) TCGA-EK-A2R7-01 11 109294803 109294803 G A C11orf87 Silent p.S148S 0.08 TCGA-EK-A2R7-01 11 109295721 109295721 T - C11orf87 3'UTR 0.34 TCGA-EK-A2R7-01 11 2797249 2797249 C T KCNQ1 Silent p.L550L 0.31 TCGA-EK-A2R7-01 11 62886681 62886681 C G SLC22A24 Missense_Mutation p.M211I 0.21 tolerated(0.67) benign(0.007) TCGA-EK-A2R7-01 11 62886759 62886759 G C SLC22A24 Missense_Mutation p.I185M 0.45 deleterious(0.03) possibly_damaging(0.622) TCGA-EK-A2R7-01 11 63668148 63668148 G C MARK2 Missense_Mutation p.E296Q 0.11 tolerated(0.05) probably_damaging(0.999) TCGA-EK-A2R7-01 11 63668149 63668149 A T MARK2 Missense_Mutation p.E296V 0.10 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R7-01 11 65563417 65563417 G T OVOL1 3'UTR 0.19 TCGA-EK-A2R7-01 11 8414079 8414079 G A STK33 Missense_Mutation p.S508F 0.28 tolerated_low_confidence(0.77) benign(0) TCGA-EK-A2R7-01 11 9450716 9450716 C G IPO7 Missense_Mutation p.Q522E 0.22 deleterious(0) possibly_damaging(0.665) TCGA-EK-A2R7-01 12 100042400 100042400 C G FAM71C Missense_Mutation p.L150V 0.51 deleterious(0) probably_damaging(0.983) TCGA-EK-A2R7-01 12 110641728 110641728 C T IFT81 Silent p.L539L 0.22 TCGA-EK-A2R7-01 12 12318043 12318043 G C LRP6 Missense_Mutation p.L578V 0.13 tolerated(0.07) possibly_damaging(0.476) TCGA-EK-A2R7-01 12 124413883 124413883 C G DNAH10 Missense_Mutation p.S4005C 0.07 possibly_damaging(0.841) TCGA-EK-A2R7-01 12 133378486 133378486 G T GOLGA3 Missense_Mutation p.T556K 0.29 deleterious(0.02) probably_damaging(0.94) TCGA-EK-A2R7-01 12 40114701 40114701 C T C12orf40 Missense_Mutation p.S536L 0.32 tolerated(0.56) benign(0.013) TCGA-EK-A2R7-01 12 69083385 69083385 C G NUP107 Nonsense_Mutation p.S58* 0.24 TCGA-EK-A2R7-01 12 7024925 7024925 C T ENO2 5'UTR 0.27 TCGA-EK-A2R7-01 12 7047952 7047952 C A ATN1 Silent p.L942L 0.33 TCGA-EK-A2R7-01 12 93803448 93803452 AAAAT - UBE2N 3'UTR 0.47 TCGA-EK-A2R7-01 13 42891750 42891750 C T AKAP11 Nonsense_Mutation p.Q1831* 0.16 TCGA-EK-A2R7-01 13 98860775 98860775 C T FARP1 Intron 0.48 TCGA-EK-A2R7-01 14 102493773 102493773 G C DYNC1H1 Missense_Mutation p.L2980F 0.34 probably_damaging(0.992) TCGA-EK-A2R7-01 14 21821725 21821725 C G SUPT16H Splice_Site p.X974_splice 0.41 TCGA-EK-A2R7-01 14 23847620 23847620 G A CMTM5 Silent p.A63A 0.31 TCGA-EK-A2R7-01 14 24886651 24886651 G T NYNRIN Nonstop_Mutation p.*1899Lext*109 0.30 TCGA-EK-A2R7-01 14 31774366 31774366 C A RP11-596D21.1 3'Flank 0.14 TCGA-EK-A2R7-01 14 57088329 57088329 T C TMEM260 Missense_Mutation p.I436T 0.16 deleterious(0) benign(0.381) TCGA-EK-A2R7-01 14 69967306 69967306 C G PLEKHD1 Missense_Mutation p.L86V 0.15 tolerated(0.05) probably_damaging(0.952) TCGA-EK-A2R7-01 14 74753409 74753409 C G ABCD4 Missense_Mutation p.E583Q 0.18 tolerated(0.4) benign(0.002) TCGA-EK-A2R7-01 14 74965948 74965948 T C LTBP2 3'UTR 0.13 TCGA-EK-A2R7-01 14 79454458 79454458 C T NRXN3 Missense_Mutation p.S706F 0.15 deleterious(0) benign(0.001) TCGA-EK-A2R7-01 14 93709190 93709190 G A BTBD7 Missense_Mutation p.P943L 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EK-A2R7-01 14 95932372 95932372 C G SYNE3 Missense_Mutation p.E175Q 0.30 deleterious(0) possibly_damaging(0.585) TCGA-EK-A2R7-01 15 40750915 40750915 G A BAHD1 Silent p.R84R 0.31 TCGA-EK-A2R7-01 15 62456157 62456157 G A C2CD4B Missense_Mutation p.R343C 0.33 tolerated(0.33) unknown(0) TCGA-EK-A2R7-01 15 74467327 74467327 C T ISLR Missense_Mutation p.S43F 0.32 deleterious(0.03) benign(0.087) TCGA-EK-A2R7-01 16 11556106 11556106 C T CTD-3088G3.8 Silent p.A1059A 0.33 TCGA-EK-A2R7-01 16 17196940 17196940 C G XYLT1 3'UTR 0.24 TCGA-EK-A2R7-01 16 30455997 30455997 G A SEPHS2 Missense_Mutation p.A351V 0.22 benign(0.078) TCGA-EK-A2R7-01 16 3533366 3533366 C T NAA60 Missense_Mutation p.S114F 0.41 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R7-01 16 3533522 3533522 C G NAA60 Missense_Mutation p.S166C 0.23 tolerated(0.15) benign(0.015) TCGA-EK-A2R7-01 16 47630322 47630322 G A PHKB Missense_Mutation p.D415N 0.25 tolerated(0.12) probably_damaging(0.995) TCGA-EK-A2R7-01 16 69974027 69974027 G A WWP2 3'UTR 0.50 TCGA-EK-A2R7-01 17 18181558 18181558 G A TOP3A Missense_Mutation p.S753L 0.20 tolerated(0.4) benign(0.003) TCGA-EK-A2R7-01 17 39254141 39254141 G A KRTAP4-8 Missense_Mutation p.R66C 0.48 deleterious(0.01) unknown(0) TCGA-EK-A2R7-01 17 4439674 4439674 C T SPNS2 Silent p.L520L 0.30 TCGA-EK-A2R7-01 17 46801961 46801961 C G PRAC1 5'Flank 0.32 TCGA-EK-A2R7-01 17 49707942 49707942 G C CA10 3'UTR 0.40 TCGA-EK-A2R7-01 17 58511373 58511373 C G C17orf64 3'Flank 0.27 TCGA-EK-A2R7-01 17 58511801 58511801 C T C17orf64 3'Flank 0.40 TCGA-EK-A2R7-01 17 59486238 59486238 C T TBX2 3'UTR 0.26 TCGA-EK-A2R7-01 17 78346772 78346772 C A RNF213 Intron 0.25 TCGA-EK-A2R7-01 18 58039577 58039577 C G MC4R Silent p.V2V 0.08 TCGA-EK-A2R7-01 19 10514087 10514087 G A CDC37 Silent p.I23I 0.18 TCGA-EK-A2R7-01 19 11942452 11942452 G C ZNF440 Missense_Mutation p.R154T 0.38 tolerated(0.31) benign(0.01) TCGA-EK-A2R7-01 19 19756497 19756497 C T ATP13A1 Missense_Mutation p.D1155N 0.33 deleterious(0.03) benign(0.053) TCGA-EK-A2R7-01 19 42569373 42569373 A G GRIK5 Splice_Site p.X82_splice 0.27 TCGA-EK-A2R7-01 19 42880215 42880215 C G MEGF8 Missense_Mutation p.S2542W 0.83 deleterious(0) probably_damaging(1) TCGA-EK-A2R7-01 19 43866431 43866431 G A CD177 3'UTR 0.28 TCGA-EK-A2R7-01 19 46313965 46313965 C T RSPH6A Missense_Mutation p.D262N 0.11 tolerated(0.16) benign(0.054) TCGA-EK-A2R7-01 19 53208777 53208777 T A ZNF611 Nonsense_Mutation p.K511* 0.12 TCGA-EK-A2R7-01 19 53993829 53993829 G A ZNF813 Missense_Mutation p.E115K 0.16 tolerated(0.81) benign(0.005) TCGA-EK-A2R7-01 19 54695194 54695194 G A TSEN34 Intron 0.17 TCGA-EK-A2R7-01 19 54778372 54778372 C T LILRB2 3'UTR 0.07 TCGA-EK-A2R7-01 19 55873665 55873665 G C FAM71E2 Missense_Mutation p.A171G 0.14 deleterious(0.04) benign(0.177) TCGA-EK-A2R7-01 19 58187558 58187558 G A ZSCAN4 Silent p.E15E 0.13 TCGA-EK-A2R7-01 19 5832556 5832556 T A FUT6 Missense_Mutation p.K8M 0.28 deleterious(0.03) benign(0.098) TCGA-EK-A2R7-01 19 58400174 58400174 A G ZNF814 5'UTR 0.28 TCGA-EK-A2R7-01 1 117531041 117531041 G A PTGFRN 3'UTR 0.10 TCGA-EK-A2R7-01 1 11861360 11861360 C T MTHFR Missense_Mutation p.M111I 0.32 tolerated(0.19) benign(0.002) TCGA-EK-A2R7-01 1 119426728 119426728 C G TBX15 3'UTR 0.17 TCGA-EK-A2R7-01 1 120056573 120056573 G T HSD3B1 Nonsense_Mutation p.E143* 0.40 TCGA-EK-A2R7-01 1 144874776 144874776 G C PDE4DIP Missense_Mutation p.S1611C 0.14 deleterious(0) probably_damaging(1) TCGA-EK-A2R7-01 1 154548324 154548324 C T CHRNB2 Silent p.I475I 0.26 TCGA-EK-A2R7-01 1 155295080 155295080 G A RUSC1 Intron 0.11 TCGA-EK-A2R7-01 1 158582665 158582665 T C SPTA1 Missense_Mutation p.N2359S 0.15 tolerated(0.78) benign(0.005) TCGA-EK-A2R7-01 1 160062257 160062257 C T IGSF8 Missense_Mutation p.G514E 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2R7-01 1 17282522 17282522 G A CROCC Silent p.Q1245Q 0.69 TCGA-EK-A2R7-01 1 178514730 178514730 C T C1ORF220 Missense_Mutation p.S39F 0.59 benign(0) TCGA-EK-A2R7-01 1 203786177 203786177 C G ZC3H11A 5'UTR 0.49 TCGA-EK-A2R7-01 1 214816030 214816030 C G CENPF Nonsense_Mutation p.S1450* 0.07 TCGA-EK-A2R7-01 1 243303647 243303647 T C CEP170 Intron 0.75 TCGA-EK-A2R7-01 1 25551554 25551554 G A SYF2 Missense_Mutation p.H169Y 0.12 tolerated(0.27) benign(0.02) TCGA-EK-A2R7-01 1 29542605 29542605 G A MECR Silent p.N106N 0.08 TCGA-EK-A2R7-01 1 34667794 34667794 C G C1orf94 Silent p.L460L 0.19 TCGA-EK-A2R7-01 1 39876478 39876478 C T KIAA0754 Missense_Mutation p.H45Y 0.59 benign(0.291) TCGA-EK-A2R7-01 1 39877325 39877325 C T KIAA0754 Missense_Mutation p.S327L 0.51 benign(0.015) TCGA-EK-A2R7-01 1 46657736 46657736 C T POMGNT1 Intron 0.52 TCGA-EK-A2R7-01 20 3129658 3129658 G A FASTKD5 Missense_Mutation p.S20F 0.29 tolerated(0.22) benign(0.002) TCGA-EK-A2R7-01 20 34817634 34817634 C T EPB41L1 3'UTR 0.40 TCGA-EK-A2R7-01 20 37207087 37207087 G A RALGAPB 3'UTR 0.66 TCGA-EK-A2R7-01 20 50139798 50139798 C T NFATC2 Missense_Mutation p.D328N 0.21 deleterious(0.04) benign(0.279) TCGA-EK-A2R7-01 20 62163883 62163883 G A PTK6 Silent p.L276L 0.67 TCGA-EK-A2R7-01 20 62572366 62572366 G C UCKL1 Missense_Mutation p.I351M 0.59 deleterious(0) possibly_damaging(0.713) TCGA-EK-A2R7-01 20 62701763 62701763 C T TCEA2 Missense_Mutation p.S223L 0.07 deleterious(0.04) possibly_damaging(0.595) TCGA-EK-A2R7-01 21 34922769 34922769 C G SON Missense_Mutation p.T411S 0.37 benign(0.292) TCGA-EK-A2R7-01 21 38125452 38125452 C A HLCS 3'UTR 0.35 TCGA-EK-A2R7-01 21 39086857 39086857 C T KCNJ6 Silent p.E201E 0.15 TCGA-EK-A2R7-01 21 43959704 43959704 G C SLC37A1 Missense_Mutation p.G145R 0.23 deleterious(0) probably_damaging(0.989) TCGA-EK-A2R7-01 21 47570075 47570077 CTT - FTCD In_Frame_Del p.K288del 0.26 TCGA-EK-A2R7-01 21 47735421 47735421 C T C21orf58 Silent p.L137L 0.29 TCGA-EK-A2R7-01 21 47783729 47783729 C A PCNT Nonsense_Mutation p.S830* 0.23 TCGA-EK-A2R7-01 22 22599619 22599619 C G VPREB1 Missense_Mutation p.S103C 0.42 deleterious(0) probably_damaging(0.916) TCGA-EK-A2R7-01 22 30415483 30415483 G C MTMR3 Missense_Mutation p.R612T 0.31 deleterious(0) probably_damaging(0.998) TCGA-EK-A2R7-01 22 31006924 31006924 G A TCN2 Missense_Mutation p.R44Q 0.16 tolerated(0.71) benign(0.014) TCGA-EK-A2R7-01 22 32072962 32072962 C T PRR14L 3'Flank 0.39 TCGA-EK-A2R7-01 22 40816412 40816412 C T MKL1 Missense_Mutation p.M350I 0.41 deleterious(0.02) benign(0.032) TCGA-EK-A2R7-01 22 43608440 43608440 C A SCUBE1 Nonsense_Mutation p.E738* 0.27 TCGA-EK-A2R7-01 22 43623494 43623494 C G SCUBE1 Missense_Mutation p.E365Q 0.05 deleterious(0.01) probably_damaging(0.981) TCGA-EK-A2R7-01 2 141115612 141115612 C T LRP1B Missense_Mutation p.M3777I 0.19 benign(0.072) TCGA-EK-A2R7-01 2 145157027 145157027 T C ZEB2 Missense_Mutation p.N576S 0.21 tolerated(0.31) benign(0.01) TCGA-EK-A2R7-01 2 164464672 164464672 G A FIGN 3'UTR 0.20 TCGA-EK-A2R7-01 2 166165187 166165187 C A SCN2A Missense_Mutation p.T163K 0.10 deleterious(0) probably_damaging(0.962) TCGA-EK-A2R7-01 2 170668947 170668947 G C METTL5 Intron 0.23 TCGA-EK-A2R7-01 2 178362425 178362425 C G AGPS Missense_Mutation p.L432V 0.29 deleterious(0.02) possibly_damaging(0.794) TCGA-EK-A2R7-01 2 196600107 196600108 - A SLC39A10 3'UTR 0.35 TCGA-EK-A2R7-01 2 198949616 198949616 C T PLCL1 Nonsense_Mutation p.R459* 0.20 TCGA-EK-A2R7-01 2 201846414 201846414 G A FAM126B Missense_Mutation p.S391F 0.30 deleterious(0.03) benign(0.176) TCGA-EK-A2R7-01 2 202065336 202065336 C G CASP10 Intron 0.21 TCGA-EK-A2R7-01 2 202903148 202903148 T - FZD7 3'UTR 0.11 TCGA-EK-A2R7-01 2 203807466 203807466 C G CARF Missense_Mutation p.L28V 0.41 tolerated_low_confidence(0.07) benign(0.099) TCGA-EK-A2R7-01 2 219270337 219270337 C G CTDSP1 3'UTR 0.50 TCGA-EK-A2R7-01 2 219855001 219855001 C A CRYBA2 Silent p.L189L 0.28 TCGA-EK-A2R7-01 2 222298944 222298944 C T EPHA4 Missense_Mutation p.S805N 0.46 deleterious(0) possibly_damaging(0.718) TCGA-EK-A2R7-01 2 233407755 233407755 C T CHRNG Silent p.S256S 0.33 TCGA-EK-A2R7-01 2 237074513 237074513 G T GBX2 3'UTR 0.43 TCGA-EK-A2R7-01 2 29406226 29406226 C T CLIP4 3'UTR 0.36 TCGA-EK-A2R7-01 2 47630504 47630504 C G MSH2 Missense_Mutation p.F58L 0.29 deleterious(0) probably_damaging(1) TCGA-EK-A2R7-01 2 61389659 61389659 G C C2orf74 Missense_Mutation p.E11Q 0.05 deleterious(0.01) possibly_damaging(0.607) TCGA-EK-A2R7-01 3 107932819 107932819 C T IFT57 Missense_Mutation p.D182N 0.30 deleterious(0.02) benign(0.104) TCGA-EK-A2R7-01 3 126733114 126733114 G A PLXNA1 Missense_Mutation p.E834K 0.32 tolerated(0.2) benign(0.269) TCGA-EK-A2R7-01 3 17052521 17052521 G A PLCL2 Silent p.L435L 0.38 TCGA-EK-A2R7-01 3 184550510 184550510 G C VPS8 Missense_Mutation p.D86H 0.16 deleterious(0) probably_damaging(0.969) TCGA-EK-A2R7-01 3 185774866 185774866 C T ETV5 Missense_Mutation p.E403K 0.32 deleterious(0) probably_damaging(0.996) TCGA-EK-A2R7-01 3 195594534 195594534 C T TNK2 Missense_Mutation p.E942K 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.861) TCGA-EK-A2R7-01 3 22414020 22414020 G A ZNF385D RNA 0.58 TCGA-EK-A2R7-01 3 27427470 27427470 G A SLC4A7 Silent p.F1126F 0.48 TCGA-EK-A2R7-01 3 27427485 27427485 G T SLC4A7 Silent p.L1121L 0.57 TCGA-EK-A2R7-01 3 38265307 38265307 G A OXSR1 Missense_Mutation p.R202H 0.34 tolerated(0.46) benign(0.099) TCGA-EK-A2R7-01 3 42700666 42700666 G C ZBTB47 Missense_Mutation p.Q273H 0.50 tolerated_low_confidence(0.06) probably_damaging(0.935) TCGA-EK-A2R7-01 3 42701164 42701164 G C ZBTB47 Missense_Mutation p.Q439H 0.53 deleterious(0.02) unknown(0) TCGA-EK-A2R7-01 3 52514409 52514409 C T NISCH Intron 0.39 TCGA-EK-A2R7-01 4 111452388 111452388 G C ENPEP Missense_Mutation p.D588H 0.59 deleterious(0.04) benign(0.438) TCGA-EK-A2R7-01 4 153245393 153245393 C G FBXW7 Missense_Mutation p.D600H 0.67 deleterious(0) probably_damaging(1) TCGA-EK-A2R7-01 4 74319612 74319612 G C AFP Missense_Mutation p.E595Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A2R7-01 5 140054407 140054407 C T HARS Missense_Mutation p.E439K 0.08 deleterious(0.01) probably_damaging(0.938) TCGA-EK-A2R7-01 5 174868410 174868410 C G DRD1 3'UTR 0.81 TCGA-EK-A2R7-01 5 72332992 72332992 G A FCHO2 Silent p.K288K 0.47 TCGA-EK-A2R7-01 5 78742913 78742913 G A HOMER1 Missense_Mutation p.S117L 0.44 deleterious(0) benign(0.079) TCGA-EK-A2R7-01 5 90087011 90087011 C T GPR98 Missense_Mutation p.R4789W 0.60 probably_damaging(0.973) TCGA-EK-A2R7-01 5 95761604 95761604 C G PCSK1 Missense_Mutation p.E106Q 0.21 tolerated(0.3) benign(0.001) TCGA-EK-A2R7-01 6 137041602 137041602 G C MAP3K5 Missense_Mutation p.L192V 0.62 tolerated(0.24) benign(0.308) TCGA-EK-A2R7-01 6 159457435 159457435 C T TAGAP Silent p.P540P 0.11 TCGA-EK-A2R7-01 6 160237056 160237056 G C PNLDC1 Missense_Mutation p.E340Q 0.55 tolerated(0.32) benign(0.228) TCGA-EK-A2R7-01 6 160328132 160328132 G C MAS1 Missense_Mutation p.E49Q 0.65 tolerated(0.16) benign(0.015) TCGA-EK-A2R7-01 6 36823079 36823079 T G PPIL1 3'UTR 0.21 TCGA-EK-A2R7-01 6 39883833 39883833 C G MOCS1 Missense_Mutation p.E188Q 0.19 tolerated(0.28) possibly_damaging(0.858) TCGA-EK-A2R7-01 6 43489001 43489001 G A POLR1C Missense_Mutation p.R335H 0.23 tolerated(0.13) benign(0.009) TCGA-EK-A2R7-01 7 103138565 103138565 C G RELN Silent p.V2934V 0.20 TCGA-EK-A2R7-01 7 121944450 121944450 C T FEZF1 Silent p.A14A 0.05 TCGA-EK-A2R7-01 7 148702242 148702242 A G PDIA4 Missense_Mutation p.F505L 0.20 tolerated(0.2) possibly_damaging(0.643) TCGA-EK-A2R7-01 7 149481978 149481978 C T SSPO Intron 0.27 TCGA-EK-A2R7-01 7 6063390 6063391 - G EIF2AK1 3'UTR 0.28 TCGA-EK-A2R7-01 8 10623360 10623360 C T PINX1 Missense_Mutation p.E180K 0.27 deleterious(0) probably_damaging(0.927) TCGA-EK-A2R7-01 8 133837520 133837520 G T PHF20L1 Nonsense_Mutation p.E550* 0.23 TCGA-EK-A2R7-01 8 21929890 21929890 G T DMTN Nonsense_Mutation p.E220* 0.30 TCGA-EK-A2R7-01 8 21929950 21929950 G C DMTN Missense_Mutation p.E240Q 0.26 tolerated(0.52) probably_damaging(0.928) TCGA-EK-A2R7-01 8 22017204 22017204 C G SFTPC 5'Flank 0.39 TCGA-EK-A2R7-01 8 38090703 38090703 C T DDHD2 Missense_Mutation p.S64L 0.19 deleterious(0) probably_damaging(0.997) TCGA-EK-A2R7-01 8 52721742 52721742 G T PXDNL Missense_Mutation p.L55I 0.19 tolerated(0.06) possibly_damaging(0.718) TCGA-EK-A2R7-01 8 95897379 95897379 G C CCNE2 Silent p.L249L 0.20 TCGA-EK-A2R7-01 9 114980939 114980939 C G PTBP3 3'UTR 0.44 TCGA-EK-A2R7-01 9 114981072 114981072 C T PTBP3 3'UTR 0.21 TCGA-EK-A2R7-01 9 114982314 114982316 CTC TT PTBP3 3'UTR 0.32 TCGA-EK-A2R7-01 9 114982378 114982378 C G PTBP3 3'UTR 0.45 TCGA-EK-A2R7-01 9 114982453 114982453 C G PTBP3 3'UTR 0.32 TCGA-EK-A2R7-01 9 114986090 114986090 G C PTBP3 3'UTR 0.62 TCGA-EK-A2R7-01 9 114986125 114986125 G C PTBP3 3'UTR 0.33 TCGA-EK-A2R7-01 9 115760342 115760342 C G ZNF883 RNA 0.29 TCGA-EK-A2R7-01 9 121929686 121929686 G A BRINP1 Silent p.D654D 0.36 TCGA-EK-A2R7-01 9 131118060 131118060 G C SLC27A4 Missense_Mutation p.E587Q 0.22 tolerated(1) benign(0.031) TCGA-EK-A2R7-01 9 139292753 139292753 G C SNAPC4 Missense_Mutation p.A43G 0.36 tolerated(0.06) benign(0.14) TCGA-EK-A2R7-01 9 33922757 33922757 G C UBAP2 Missense_Mutation p.F1064L 0.34 deleterious(0.02) unknown(0) TCGA-EK-A2R7-01 9 88272466 88272466 T C AGTPBP1 Missense_Mutation p.N265D 0.32 tolerated(0.15) benign(0.438) TCGA-EK-A2R7-01 X 102192891 102192891 C T RAB40AL Silent p.P215P 0.38 TCGA-EK-A2R7-01 X 133609305 133609305 G A HPRT1 Missense_Mutation p.D77N 0.22 deleterious(0.04) possibly_damaging(0.791) TCGA-EK-A2R7-01 X 140984602 140984602 C G MAGEC3 Intron 0.24 TCGA-EK-A2R7-01 X 14863270 14863270 T C FANCB Missense_Mutation p.I545M 0.19 tolerated(0.09) possibly_damaging(0.452) TCGA-EK-A2R7-01 X 15849592 15849592 C G AP1S2 Intron 0.24 TCGA-EK-A2R7-01 X 49645654 49645654 G C USP27X Missense_Mutation p.E248D 0.31 tolerated(0.76) benign(0.006) TCGA-EK-A2R7-01 X 55514505 55514505 C T USP51 Missense_Mutation p.D290N 0.21 deleterious(0) probably_damaging(0.989) TCGA-EK-A2R7-01 X 57021344 57021344 G A SPIN3 Missense_Mutation p.R13W 0.24 tolerated(0.1) possibly_damaging(0.794) TCGA-EK-A2R7-01 X 73954025 73954025 C T KIAA2022 3'UTR 0.28 TCGA-EK-A2R7-01 X 76874309 76874309 G T ATRX Missense_Mutation p.H1805N 0.33 probably_damaging(0.999) TCGA-EK-A2R7-01 X 78216864 78216864 G A P2RY10 Missense_Mutation p.A283T 0.12 tolerated(0.93) benign(0.001) TCGA-EK-A2R7-01 X 99662118 99662118 A G PCDH19 Missense_Mutation p.V493A 0.34 tolerated(0.13) benign(0.044) TCGA-EK-A2R8-01 10 102247537 102247537 C T SEC31B Missense_Mutation p.V1126M 0.27 deleterious(0) benign(0.394) TCGA-EK-A2R8-01 10 103534606 103534606 G A FGF8 Nonsense_Mutation p.Q74* 0.23 TCGA-EK-A2R8-01 10 1042198 1042198 C T GTPBP4 Intron 0.33 TCGA-EK-A2R8-01 10 104243919 104243919 C G ACTR1A Missense_Mutation p.E219Q 0.29 deleterious(0.02) probably_damaging(1) TCGA-EK-A2R8-01 10 105359675 105359675 C G SH3PXD2A 3'UTR 0.31 TCGA-EK-A2R8-01 10 112724639 112724639 G A SHOC2 Missense_Mutation p.D175N 0.24 deleterious(0.01) benign(0.154) TCGA-EK-A2R8-01 10 11308601 11308601 G A CELF2 Silent p.Q193Q 0.30 TCGA-EK-A2R8-01 10 118357673 118357673 G C PNLIPRP1 Missense_Mutation p.W270S 0.28 deleterious(0.02) benign(0.381) TCGA-EK-A2R8-01 10 121196337 121196337 G C GRK5 Missense_Mutation p.E305Q 0.29 tolerated(0.17) probably_damaging(0.96) TCGA-EK-A2R8-01 10 1246280 1246280 G A ADARB2 Intron 0.34 TCGA-EK-A2R8-01 10 124692001 124692001 G C C10orf88 Missense_Mutation p.T427S 0.19 tolerated(1) benign(0.003) TCGA-EK-A2R8-01 10 134788188 134788188 G A LINC01168 RNA 0.34 TCGA-EK-A2R8-01 10 13652056 13652056 G C PRPF18 Missense_Mutation p.L127F 0.20 tolerated(1) benign(0.039) TCGA-EK-A2R8-01 10 43015673 43015673 C T ZNF37BP RNA 0.27 TCGA-EK-A2R8-01 10 63944087 63944087 G T RTKN2 Missense_Mutation p.F526L 0.24 probably_damaging(0.916) TCGA-EK-A2R8-01 10 71712663 71712663 G C COL13A1 Missense_Mutation p.R684T 0.34 tolerated(0.11) probably_damaging(0.993) TCGA-EK-A2R8-01 10 7327770 7327770 G A SFMBT2 Intron 0.18 TCGA-EK-A2R8-01 10 75204553 75204553 G C PPP3CB Silent p.L433L 0.23 TCGA-EK-A2R8-01 10 75567903 75567903 G A NDST2 Nonsense_Mutation p.R82* 0.23 TCGA-EK-A2R8-01 10 75936625 75936625 G A ADK Intron 0.16 TCGA-EK-A2R8-01 10 91061863 91061863 G C IFIT2 5'UTR 0.19 TCGA-EK-A2R8-01 10 95451844 95451844 C A FRA10AC1 Missense_Mutation p.K129N 0.42 deleterious(0.01) probably_damaging(0.989) TCGA-EK-A2R8-01 11 104879737 104879737 C T CASP5 Missense_Mutation p.R6K 0.56 tolerated_low_confidence(1) benign(0) TCGA-EK-A2R8-01 11 107976894 107976894 G A CUL5 3'UTR 0.25 TCGA-EK-A2R8-01 11 111250006 111250006 G A POU2AF1 5'UTR 0.42 TCGA-EK-A2R8-01 11 113610023 113610023 G A ZW10 Silent p.L555L 0.25 TCGA-EK-A2R8-01 11 117321344 117321344 G T DSCAML1 Missense_Mutation p.S1270Y 0.23 deleterious(0) probably_damaging(0.986) TCGA-EK-A2R8-01 11 118399332 118399332 C G TTC36 Missense_Mutation p.Q45E 0.42 tolerated(1) benign(0.001) TCGA-EK-A2R8-01 11 118415714 118415714 G C IFT46 Missense_Mutation p.L329V 0.27 deleterious(0.01) possibly_damaging(0.853) TCGA-EK-A2R8-01 11 118768310 118768310 C T BCL9L 3'UTR 0.29 TCGA-EK-A2R8-01 11 120831691 120831691 G C GRIK4 Missense_Mutation p.D650H 0.31 deleterious(0) probably_damaging(0.924) TCGA-EK-A2R8-01 11 121367720 121367720 C G SORL1 Missense_Mutation p.Q301E 0.25 tolerated(0.11) benign(0.015) TCGA-EK-A2R8-01 11 121986149 121986149 G C BLID 3'UTR 0.18 TCGA-EK-A2R8-01 11 122928447 122928447 C G HSPA8 Missense_Mutation p.D646H 0.16 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-EK-A2R8-01 11 123755273 123755273 C T TMEM225 Silent p.L84L 0.23 TCGA-EK-A2R8-01 11 18558012 18558012 G C UEVLD Silent p.L355L 0.31 TCGA-EK-A2R8-01 11 20070498 20070498 C T NAV2 Missense_Mutation p.S1399L 0.32 tolerated(0.11) probably_damaging(0.992) TCGA-EK-A2R8-01 11 20070575 20070575 C T NAV2 Nonsense_Mutation p.Q1425* 0.23 TCGA-EK-A2R8-01 11 2185559 2185559 G C TH Missense_Mutation p.I497M 0.30 tolerated(0.08) possibly_damaging(0.806) TCGA-EK-A2R8-01 11 46529873 46529873 G C AMBRA1 Nonsense_Mutation p.S646* 0.42 TCGA-EK-A2R8-01 11 46703639 46703639 G T ARHGAP1 Silent p.L137L 0.26 TCGA-EK-A2R8-01 11 46896353 46896353 G C LRP4 Missense_Mutation p.I1409M 0.29 deleterious(0) probably_damaging(1) TCGA-EK-A2R8-01 11 47283259 47283259 G A NR1H3 Silent p.L290L 0.25 TCGA-EK-A2R8-01 11 47283301 47283301 G A NR1H3 Intron 0.26 TCGA-EK-A2R8-01 11 55579854 55579854 G C OR5L1 Silent p.V304V 0.30 TCGA-EK-A2R8-01 11 6231275 6231275 G C C11orf42 Missense_Mutation p.E90Q 0.50 tolerated(0.2) benign(0.071) TCGA-EK-A2R8-01 11 64001629 64001629 G T DNAJC4 Missense_Mutation p.E233D 0.38 tolerated_low_confidence(0.55) benign(0.021) TCGA-EK-A2R8-01 11 64627690 64627690 C T EHD1 Silent p.L207L 0.31 TCGA-EK-A2R8-01 11 66190194 66190194 G C NPAS4 Missense_Mutation p.Q160H 0.37 deleterious(0) probably_damaging(0.988) TCGA-EK-A2R8-01 11 67924936 67924936 C T SUV420H1 3'UTR 0.43 TCGA-EK-A2R8-01 11 72551993 72551993 G A FCHSD2 Missense_Mutation p.H690Y 0.28 tolerated(0.12) benign(0.04) TCGA-EK-A2R8-01 11 73584276 73584276 C T COA4 Missense_Mutation p.D50N 0.27 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R8-01 11 73850738 73850738 G C C2CD3 Missense_Mutation p.Q207E 0.39 tolerated(0.54) benign(0.016) TCGA-EK-A2R8-01 11 75480139 75480139 G C DGAT2 Missense_Mutation p.E35Q 0.24 tolerated_low_confidence(0.63) benign(0.033) TCGA-EK-A2R8-01 11 77924696 77924698 AGG - USP35 In_Frame_Del p.E966del 0.23 TCGA-EK-A2R8-01 11 87032512 87032512 C G TMEM135 3'UTR 0.24 TCGA-EK-A2R8-01 11 8718078 8718078 G A ST5 Missense_Mutation p.S1063F 0.31 deleterious(0) probably_damaging(1) TCGA-EK-A2R8-01 12 108634216 108634216 G A WSCD2 Missense_Mutation p.A414T 0.13 deleterious(0) benign(0.014) TCGA-EK-A2R8-01 12 112230491 112230491 G A ALDH2 Missense_Mutation p.D330N 0.34 tolerated(0.23) benign(0.001) TCGA-EK-A2R8-01 12 112617099 112617099 C T HECTD4 Missense_Mutation p.R3551K 0.25 benign(0) TCGA-EK-A2R8-01 12 121676481 121676481 G C CAMKK2 3'UTR 0.25 TCGA-EK-A2R8-01 12 123813354 123813354 C G SBNO1 Missense_Mutation p.S408T 0.27 deleterious(0.04) possibly_damaging(0.874) TCGA-EK-A2R8-01 12 123956417 123956417 G A RILPL1 3'UTR 0.27 TCGA-EK-A2R8-01 12 14840906 14840906 G C GUCY2C Silent p.L103L 0.29 TCGA-EK-A2R8-01 12 2039913 2039913 C T LINC00940 RNA 0.22 TCGA-EK-A2R8-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.29 deleterious(0.04) probably_damaging(0.993) TCGA-EK-A2R8-01 12 2937120 2937120 C T NRIP2 Silent p.E224E 0.25 TCGA-EK-A2R8-01 12 32146012 32146012 G C KIAA1551 3'UTR 0.31 TCGA-EK-A2R8-01 12 49072853 49072853 C T KANSL2 Missense_Mutation p.D171N 0.36 deleterious(0) possibly_damaging(0.478) TCGA-EK-A2R8-01 12 52680187 52680187 C T KRT81 Missense_Mutation p.C457Y 0.42 tolerated(0.14) benign(0.043) TCGA-EK-A2R8-01 12 52757068 52757068 G A KRT85 Missense_Mutation p.R305C 0.42 deleterious(0.05) possibly_damaging(0.861) TCGA-EK-A2R8-01 12 54396299 54396299 G A HOXC9 Silent p.E208E 0.14 TCGA-EK-A2R8-01 12 54403491 54403491 G A HOXC8 Nonsense_Mutation p.W141* 0.16 TCGA-EK-A2R8-01 12 57906036 57906036 C T MARS Silent p.F551F 0.28 TCGA-EK-A2R8-01 12 57919450 57919450 C G MBD6 Silent p.L233L 0.13 TCGA-EK-A2R8-01 12 70956771 70956771 C G PTPRB Missense_Mutation p.D1341H 0.49 deleterious(0) probably_damaging(0.993) TCGA-EK-A2R8-01 12 70989914 70989914 G A PTPRB Silent p.L391L 0.40 TCGA-EK-A2R8-01 12 97137268 97137268 C G C12orf55 Missense_Mutation p.F2436L 0.32 tolerated(0.77) benign(0) TCGA-EK-A2R8-01 12 99042552 99042552 C T APAF1 Missense_Mutation p.S96F 0.33 tolerated(0.6) benign(0.274) TCGA-EK-A2R8-01 13 111944762 111944762 T G ARHGEF7 3'UTR 0.26 TCGA-EK-A2R8-01 13 113213684 113213684 G A TUBGCP3 Silent p.L94L 0.26 TCGA-EK-A2R8-01 13 25458528 25458528 T C CENPJ Missense_Mutation p.D1184G 0.13 deleterious(0.01) probably_damaging(0.94) TCGA-EK-A2R8-01 13 41657294 41657294 T C WBP4 3'UTR 0.36 TCGA-EK-A2R8-01 13 48562678 48562678 G A SUCLA2 Nonsense_Mutation p.Q178* 0.26 TCGA-EK-A2R8-01 13 73649905 73649905 G A KLF5 Missense_Mutation p.E419K 0.36 deleterious(0) probably_damaging(0.982) TCGA-EK-A2R8-01 13 98674665 98674665 G A IPO5 3'UTR 0.24 TCGA-EK-A2R8-01 14 103599842 103599842 C T TNFAIP2 Silent p.F563F 0.27 TCGA-EK-A2R8-01 14 24687282 24687282 C T NEDD8 Intron 0.18 TCGA-EK-A2R8-01 14 24838969 24838969 C G NFATC4 Missense_Mutation p.S185C 0.38 deleterious(0) probably_damaging(0.997) TCGA-EK-A2R8-01 14 36147177 36147177 G A RALGAPA1 Missense_Mutation p.L1029F 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-EK-A2R8-01 14 50218554 50218554 C G KLHDC1 3'UTR 0.33 TCGA-EK-A2R8-01 14 70235952 70235952 C G SRSF5 Nonsense_Mutation p.S117* 0.29 TCGA-EK-A2R8-01 14 81251350 81251350 G C CEP128 Silent p.L700L 0.33 TCGA-EK-A2R8-01 14 91671151 91671151 G A C14orf159 Missense_Mutation p.D516N 0.31 deleterious(0.04) possibly_damaging(0.652) TCGA-EK-A2R8-01 14 94405849 94405849 C T ASB2 Missense_Mutation p.E408K 0.24 deleterious(0.03) possibly_damaging(0.846) TCGA-EK-A2R8-01 14 97009200 97009200 C G PAPOLA Nonsense_Mutation p.S420* 0.32 TCGA-EK-A2R8-01 15 101523744 101523744 G A LRRK1 Silent p.L91L 0.35 TCGA-EK-A2R8-01 15 102462417 102462417 C A OR4F4 Silent p.L282L 0.20 TCGA-EK-A2R8-01 15 25456838 25456838 T C SNORD115-22 3'Flank 0.34 TCGA-EK-A2R8-01 15 29443942 29443942 G A FAM189A1 Nonsense_Mutation p.Q209* 0.12 TCGA-EK-A2R8-01 15 31796008 31796008 C G OTUD7A Missense_Mutation p.E296Q 0.35 deleterious(0.02) possibly_damaging(0.814) TCGA-EK-A2R8-01 15 40565662 40565662 C T PAK6 Missense_Mutation p.L536F 0.28 tolerated(0.21) probably_damaging(0.994) TCGA-EK-A2R8-01 15 42158710 42158710 G A SPTBN5 Intron 0.33 TCGA-EK-A2R8-01 15 42179421 42179421 C T SPTBN5 Missense_Mutation p.R293K 0.26 probably_damaging(0.998) TCGA-EK-A2R8-01 15 42684915 42684915 G C CAPN3 Missense_Mutation p.D342H 0.25 deleterious(0.01) possibly_damaging(0.528) TCGA-EK-A2R8-01 15 42983444 42983444 G C STARD9 Missense_Mutation p.G3223A 0.27 possibly_damaging(0.797) TCGA-EK-A2R8-01 15 45467558 45467558 C T SHF Missense_Mutation p.E171K 0.26 tolerated(0.33) benign(0.155) TCGA-EK-A2R8-01 15 50521170 50521170 G A SLC27A2 Missense_Mutation p.E496K 0.23 deleterious(0) probably_damaging(0.96) TCGA-EK-A2R8-01 15 52697558 52697558 G A MYO5A Nonsense_Mutation p.R327* 0.22 TCGA-EK-A2R8-01 15 69113222 69113222 C A ANP32A 5'UTR 0.33 TCGA-EK-A2R8-01 15 72176026 72176026 C T MYO9A Silent p.K1769K 0.26 TCGA-EK-A2R8-01 15 74924659 74924659 G C EDC3 3'UTR 0.24 TCGA-EK-A2R8-01 15 76031519 76031519 G C AC019294.1 3'UTR 0.34 TCGA-EK-A2R8-01 15 76209603 76209603 C T FBXO22 Nonsense_Mutation p.Q166* 0.28 TCGA-EK-A2R8-01 15 80450380 80450380 G A FAH Intron 0.28 TCGA-EK-A2R8-01 15 81635669 81635669 G A TMC3 Silent p.F555F 0.47 TCGA-EK-A2R8-01 15 89743646 89743646 C T ABHD2 3'UTR 0.50 TCGA-EK-A2R8-01 15 93609260 93609260 G A RGMA Intron 0.13 TCGA-EK-A2R8-01 15 99666966 99666966 C T SYNM Silent p.I324I 0.34 TCGA-EK-A2R8-01 16 2030937 2030937 C T NOXO1 Intron 0.43 TCGA-EK-A2R8-01 16 21071588 21071588 G C DNAH3 Silent p.V1270V 0.24 TCGA-EK-A2R8-01 16 2143682 2143682 C G PKD1 Missense_Mutation p.D3627H 0.33 probably_damaging(0.966) TCGA-EK-A2R8-01 16 22260107 22260107 G C EEF2K Missense_Mutation p.D127H 0.34 deleterious(0) probably_damaging(0.921) TCGA-EK-A2R8-01 16 29906726 29906726 C T SEZ6L2 Missense_Mutation p.G236E 0.24 tolerated(0.06) benign(0.055) TCGA-EK-A2R8-01 16 29996797 29996797 G A TAOK2 Silent p.R562R 0.30 TCGA-EK-A2R8-01 16 29997038 29997038 G C TAOK2 Missense_Mutation p.Q616H 0.41 tolerated(0.24) possibly_damaging(0.885) TCGA-EK-A2R8-01 16 29998291 29998291 G C TAOK2 Missense_Mutation p.E900Q 0.41 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-EK-A2R8-01 16 30953753 30953753 C T FBXL19 Missense_Mutation p.S528L 0.32 deleterious(0) possibly_damaging(0.608) TCGA-EK-A2R8-01 16 3194554 3194554 G A CASP16 5'UTR 0.36 TCGA-EK-A2R8-01 16 3526230 3526230 G A NAA60 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-EK-A2R8-01 16 4163953 4163953 G A ADCY9 Silent p.C497C 0.35 TCGA-EK-A2R8-01 16 46723049 46723049 G C VPS35 5'UTR 0.30 TCGA-EK-A2R8-01 16 50353805 50353805 C G BRD7 Missense_Mutation p.L632F 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-EK-A2R8-01 16 56966192 56966192 C G HERPUD1 Silent p.L12L 0.33 TCGA-EK-A2R8-01 16 56966267 56966267 C G HERPUD1 Silent p.L37L 0.44 TCGA-EK-A2R8-01 16 57687930 57687930 C T GPR56 Missense_Mutation p.S218F 0.36 deleterious(0.02) possibly_damaging(0.62) TCGA-EK-A2R8-01 16 57688015 57688015 C G GPR56 Silent p.L246L 0.27 TCGA-EK-A2R8-01 16 71572352 71572352 C G CHST4 3'UTR 0.16 TCGA-EK-A2R8-01 16 71679351 71679351 G T PHLPP2 3'UTR 0.26 TCGA-EK-A2R8-01 16 72828478 72828478 G A ZFHX3 Silent p.F2701F 0.37 TCGA-EK-A2R8-01 16 8622102 8622102 G C TMEM114 Silent p.L42L 0.33 TCGA-EK-A2R8-01 17 10440596 10440596 C T MYH2 Missense_Mutation p.M617I 0.53 tolerated(0.38) benign(0.001) TCGA-EK-A2R8-01 17 1556890 1556890 G A PRPF8 Silent p.I2105I 0.40 TCGA-EK-A2R8-01 17 1557268 1557268 G A PRPF8 Silent p.I2010I 0.39 TCGA-EK-A2R8-01 17 17399452 17399452 G C RASD1 Missense_Mutation p.S15W 0.35 deleterious(0.03) possibly_damaging(0.708) TCGA-EK-A2R8-01 17 18150641 18150641 C T FLII Missense_Mutation p.D840N 0.31 deleterious(0.05) probably_damaging(0.98) TCGA-EK-A2R8-01 17 21319480 21319480 G A KCNJ12 Missense_Mutation p.E276K 0.12 tolerated(0.22) benign(0.014) TCGA-EK-A2R8-01 17 26688323 26688323 C G TMEM199 3'UTR 0.33 TCGA-EK-A2R8-01 17 26905054 26905054 C G SPAG5 Missense_Mutation p.D1162H 0.29 deleterious(0) probably_damaging(1) TCGA-EK-A2R8-01 17 26913181 26913181 G C SPAG5 Missense_Mutation p.S511C 0.21 tolerated(0.06) benign(0.258) TCGA-EK-A2R8-01 17 26919090 26919090 G A SPAG5 Missense_Mutation p.S391L 0.25 tolerated(0.1) benign(0.137) TCGA-EK-A2R8-01 17 26919933 26919933 G C SPAG5 Missense_Mutation p.S110C 0.30 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-EK-A2R8-01 17 30354813 30354813 G A LRRC37B Missense_Mutation p.E593K 0.27 deleterious(0) possibly_damaging(0.636) TCGA-EK-A2R8-01 17 33476026 33476026 G C UNC45B Missense_Mutation p.R68T 0.29 deleterious(0.03) benign(0.009) TCGA-EK-A2R8-01 17 34072333 34072333 G C GAS2L2 Missense_Mutation p.S728W 0.27 deleterious(0) probably_damaging(0.97) TCGA-EK-A2R8-01 17 35453990 35453990 C G ACACA Missense_Mutation p.D2278H 0.42 tolerated(0.53) possibly_damaging(0.857) TCGA-EK-A2R8-01 17 36656838 36656838 G C ARHGAP23 Splice_Site p.X1139_splice 0.35 TCGA-EK-A2R8-01 17 39597089 39597089 C T KRT38 Missense_Mutation p.D29N 0.30 tolerated(0.45) benign(0.337) TCGA-EK-A2R8-01 17 39847105 39847105 T A EIF1 3'UTR 0.40 TCGA-EK-A2R8-01 17 39847106 39847106 G A EIF1 3'UTR 0.40 TCGA-EK-A2R8-01 17 39847266 39847266 G T EIF1 3'UTR 0.50 TCGA-EK-A2R8-01 17 39884506 39884506 C T HAP1 Missense_Mutation p.E383K 0.25 deleterious(0.01) possibly_damaging(0.486) TCGA-EK-A2R8-01 17 40880971 40880971 C G EZH1 Splice_Site 0.25 TCGA-EK-A2R8-01 17 43341844 43341844 C T SPATA32 5'Flank 0.20 TCGA-EK-A2R8-01 17 44632680 44632680 C G LRRC37A2 Silent p.L1648L 0.30 TCGA-EK-A2R8-01 17 45699845 45699845 C G NPEPPS 3'UTR 0.29 TCGA-EK-A2R8-01 17 46674028 46674028 G A HOXB6 Missense_Mutation p.S141F 0.37 tolerated(0.07) benign(0.01) TCGA-EK-A2R8-01 17 48738374 48738374 C G ABCC3 Missense_Mutation p.F299L 0.32 tolerated(1) benign(0.411) TCGA-EK-A2R8-01 17 48738473 48738473 C G ABCC3 Silent p.L332L 0.28 TCGA-EK-A2R8-01 17 48745145 48745145 C T ABCC3 Intron 0.13 TCGA-EK-A2R8-01 17 55027619 55027619 C G COIL Missense_Mutation p.L328F 0.42 deleterious(0.03) benign(0.131) TCGA-EK-A2R8-01 17 55028230 55028230 C G COIL Missense_Mutation p.D125H 0.32 deleterious(0.02) possibly_damaging(0.735) TCGA-EK-A2R8-01 17 59968993 59968993 G C INTS2 Missense_Mutation p.P594A 0.21 tolerated(1) probably_damaging(0.96) TCGA-EK-A2R8-01 17 61278190 61278190 C G TANC2 Missense_Mutation p.S140C 0.36 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R8-01 17 64216821 64216821 G A APOH Missense_Mutation p.T152I 0.38 tolerated(0.2) benign(0.004) TCGA-EK-A2R8-01 17 7227302 7227302 C T NEURL4 Missense_Mutation p.E698K 0.30 tolerated(0.09) benign(0.374) TCGA-EK-A2R8-01 17 73888485 73888485 C T TRIM65 Missense_Mutation p.E203K 0.22 tolerated(0.1) benign(0.009) TCGA-EK-A2R8-01 17 74270156 74270156 C T QRICH2 3'UTR 0.26 TCGA-EK-A2R8-01 17 76353064 76353064 G C SOCS3 3'UTR 0.23 TCGA-EK-A2R8-01 17 78222034 78222034 C G SLC26A11 Missense_Mutation p.S467C 0.37 deleterious(0.03) benign(0.353) TCGA-EK-A2R8-01 17 78518703 78518703 G C RPTOR 5'Flank 0.24 TCGA-EK-A2R8-01 17 79827732 79827732 G C ARHGDIA Silent p.V25V 0.15 TCGA-EK-A2R8-01 17 8135226 8135226 G T CTC1 Missense_Mutation p.Q794K 0.32 tolerated(0.05) benign(0.009) TCGA-EK-A2R8-01 18 20878009 20878009 C G TMEM241 Missense_Mutation p.E285Q 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A2R8-01 18 22902062 22902062 C T ZNF521 Missense_Mutation p.E44K 0.30 tolerated_low_confidence(0.19) benign(0.058) TCGA-EK-A2R8-01 18 28926069 28926069 C G DSG1 Missense_Mutation p.Q670E 0.31 tolerated(1) possibly_damaging(0.497) TCGA-EK-A2R8-01 18 3215001 3215001 G A MYOM1 Missense_Mutation p.S74L 0.34 tolerated_low_confidence(0.09) benign(0.077) TCGA-EK-A2R8-01 18 34298408 34298408 C T FHOD3 Silent p.V874V 0.29 TCGA-EK-A2R8-01 18 5416294 5416294 C T EPB41L3 Silent p.R530R 0.29 TCGA-EK-A2R8-01 18 56203437 56203437 G C ALPK2 Missense_Mutation p.L1328V 0.48 tolerated(0.07) possibly_damaging(0.577) TCGA-EK-A2R8-01 19 10823475 10823475 G A QTRT1 Silent p.L301L 0.65 TCGA-EK-A2R8-01 19 10943499 10943499 G C TMED1 3'UTR 0.68 TCGA-EK-A2R8-01 19 10943518 10943518 G A TMED1 3'UTR 0.67 TCGA-EK-A2R8-01 19 1127732 1127732 G C SBNO2 Missense_Mutation p.I104M 0.50 tolerated_low_confidence(0.06) benign(0.071) TCGA-EK-A2R8-01 19 1220443 1220443 C A STK11 Missense_Mutation p.P179Q 0.47 deleterious(0) probably_damaging(1) TCGA-EK-A2R8-01 19 18675676 18675676 C G KXD1 Intron 0.42 TCGA-EK-A2R8-01 19 3162874 3162874 G A GNA15 Missense_Mutation p.E328K 0.45 deleterious(0.04) benign(0.013) TCGA-EK-A2R8-01 19 32973040 32973040 G A DPY19L3 Missense_Mutation p.R682H 0.56 deleterious(0) probably_damaging(0.997) TCGA-EK-A2R8-01 19 3543237 3543237 G C C19orf71 Missense_Mutation p.D30H 0.57 deleterious(0) benign(0.022) TCGA-EK-A2R8-01 19 36164426 36164426 C G UPK1A Silent p.L149L 0.18 TCGA-EK-A2R8-01 19 41634022 41634022 G A CYP2F1 3'UTR 0.49 TCGA-EK-A2R8-01 19 44378083 44378083 C T ZNF404 Missense_Mutation p.E95K 0.17 tolerated(0.74) benign(0.002) TCGA-EK-A2R8-01 19 46174547 46174547 C T GIPR Silent p.L59L 0.16 TCGA-EK-A2R8-01 19 46332236 46332236 C T SYMPK Silent p.Q659Q 0.44 TCGA-EK-A2R8-01 19 50436077 50436077 C G ATF5 Missense_Mutation p.Q193E 0.17 tolerated(1) benign(0.01) TCGA-EK-A2R8-01 19 5274291 5274291 G A PTPRS Silent p.F52F 0.58 TCGA-EK-A2R8-01 19 53304956 53304956 C T ZNF28 Splice_Site p.X48_splice 0.42 TCGA-EK-A2R8-01 19 5456144 5456144 G T ZNRF4 Silent p.V214V 0.51 TCGA-EK-A2R8-01 19 54781740 54781740 C T LILRB2 Intron 0.16 TCGA-EK-A2R8-01 19 55452863 55452863 T C NLRP7 Missense_Mutation p.N73D 0.49 tolerated(0.08) benign(0.002) TCGA-EK-A2R8-01 19 58216246 58216246 C G ZNF154 Missense_Mutation p.E45D 0.40 deleterious(0.01) probably_damaging(0.983) TCGA-EK-A2R8-01 19 58805598 58805598 G C ZNF8 Missense_Mutation p.E142Q 0.34 tolerated(0.24) benign(0.006) TCGA-EK-A2R8-01 19 608051 608051 G A HCN2 Missense_Mutation p.E436K 0.56 tolerated(0.64) benign(0.039) TCGA-EK-A2R8-01 19 8997505 8997505 G A MUC16 Silent p.L13639L 0.49 TCGA-EK-A2R8-01 1 101194865 101194865 C T VCAM1 Silent p.N377N 0.41 TCGA-EK-A2R8-01 1 1169983 1169983 G A B3GALT6 3'UTR 0.40 TCGA-EK-A2R8-01 1 118550795 118550795 G T SPAG17 Missense_Mutation p.Q1487K 0.33 tolerated(0.7) possibly_damaging(0.55) TCGA-EK-A2R8-01 1 144915469 144915469 C T PDE4DIP Silent p.V652V 0.16 TCGA-EK-A2R8-01 1 145763595 145763595 C T PDZK1 Missense_Mutation p.S511F 0.28 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R8-01 1 148342507 148342507 C G NBPF20 Missense_Mutation p.E177Q 0.19 benign(0.413) TCGA-EK-A2R8-01 1 150241120 150241120 G A APH1A Missense_Mutation p.R31C 0.31 deleterious(0) possibly_damaging(0.84) TCGA-EK-A2R8-01 1 150477452 150477452 G C TARS2 Missense_Mutation p.E631Q 0.27 tolerated(0.56) benign(0.113) TCGA-EK-A2R8-01 1 150523407 150523407 C T AL356356.1 Silent p.L112L 0.36 TCGA-EK-A2R8-01 1 152192729 152192729 G C HRNR Nonsense_Mutation p.S459* 0.36 TCGA-EK-A2R8-01 1 153906608 153906608 C G DENND4B Intron 0.30 TCGA-EK-A2R8-01 1 155110168 155110168 C G SLC50A1 Missense_Mutation p.I138M 0.40 deleterious(0.04) possibly_damaging(0.676) TCGA-EK-A2R8-01 1 155448847 155448847 G A ASH1L Missense_Mutation p.R1272W 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EK-A2R8-01 1 155716584 155716584 C T GON4L 3'Flank 0.18 TCGA-EK-A2R8-01 1 156105656 156105656 C T LMNA Intron 0.40 TCGA-EK-A2R8-01 1 15752400 15752400 G A EFHD2 Silent p.L114L 0.31 TCGA-EK-A2R8-01 1 158227233 158227233 C G CD1A Missense_Mutation p.F302L 0.32 tolerated(1) benign(0) TCGA-EK-A2R8-01 1 172377045 172377045 C T DNM3 3'UTR 0.29 TCGA-EK-A2R8-01 1 173551130 173551130 C T SLC9C2 Missense_Mutation p.E220K 0.36 tolerated(0.96) benign(0.026) TCGA-EK-A2R8-01 1 1849465 1849465 C G TMEM52 Missense_Mutation p.K162N 0.35 deleterious(0) probably_damaging(0.983) TCGA-EK-A2R8-01 1 19180914 19180914 G A TAS1R2 Silent p.L350L 0.29 TCGA-EK-A2R8-01 1 197297588 197297588 C G CRB1 Nonsense_Mutation p.S36* 0.28 TCGA-EK-A2R8-01 1 200827096 200827096 C G CAMSAP2 Missense_Mutation p.S1449C 0.22 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R8-01 1 203152837 203152837 C G CHI3L1 Missense_Mutation p.D133H 0.33 deleterious(0) probably_damaging(0.997) TCGA-EK-A2R8-01 1 20517712 20517712 G A UBXN10 Missense_Mutation p.D220N 0.17 tolerated(0.31) benign(0.021) TCGA-EK-A2R8-01 1 228553871 228553871 C T OBSCN Missense_Mutation p.S7344L 0.42 benign(0.001) TCGA-EK-A2R8-01 1 248737384 248737384 G A OR2T34 Silent p.L225L 0.35 TCGA-EK-A2R8-01 1 2493013 2493013 C T TNFRSF14 Intron 0.25 TCGA-EK-A2R8-01 1 33960203 33960203 C G ZSCAN20 Silent p.L753L 0.26 TCGA-EK-A2R8-01 1 36636740 36636740 C T MAP7D1 Missense_Mutation p.S72L 0.35 benign(0.009) TCGA-EK-A2R8-01 1 39910438 39910438 G C MACF1 Missense_Mutation p.K4453N 0.22 benign(0.091) TCGA-EK-A2R8-01 1 40506258 40506258 C G CAP1 5'UTR 0.53 TCGA-EK-A2R8-01 1 46073046 46073046 G C NASP Missense_Mutation p.E155Q 0.23 deleterious(0.02) possibly_damaging(0.478) TCGA-EK-A2R8-01 1 46826421 46826421 G A NSUN4 Missense_Mutation p.E267K 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-EK-A2R8-01 1 52264001 52264001 C G NRD1 Missense_Mutation p.E910Q 0.22 tolerated(0.18) benign(0.088) TCGA-EK-A2R8-01 1 53580588 53580588 G A SLC1A7 Silent p.L91L 0.33 TCGA-EK-A2R8-01 1 55118859 55118859 G C MROH7 Missense_Mutation p.R87T 0.21 tolerated_low_confidence(0.24) benign(0.006) TCGA-EK-A2R8-01 1 55175900 55175900 C G MROH7 3'UTR 0.29 TCGA-EK-A2R8-01 1 64644127 64644127 G C ROR1 Missense_Mutation p.Q801H 0.36 deleterious(0.01) probably_damaging(0.984) TCGA-EK-A2R8-01 1 76540566 76540566 G A ST6GALNAC3 Silent p.L5L 0.25 TCGA-EK-A2R8-01 1 77619982 77619982 G C PIGK Intron 0.31 TCGA-EK-A2R8-01 1 82408901 82408901 G A LPHN2 Missense_Mutation p.D216N 0.25 deleterious(0) possibly_damaging(0.864) TCGA-EK-A2R8-01 1 84403639 84403639 G A TTLL7 Missense_Mutation p.R262W 0.25 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R8-01 1 91727882 91727882 G A HFM1 Missense_Mutation p.S1385F 0.25 deleterious_low_confidence(0.03) benign(0.01) TCGA-EK-A2R8-01 1 95332942 95332942 G A SLC44A3 Missense_Mutation p.C484Y 0.34 deleterious(0.02) benign(0.042) TCGA-EK-A2R8-01 20 25060148 25060148 C G VSX1 Missense_Mutation p.E143Q 0.27 deleterious(0.01) benign(0.296) TCGA-EK-A2R8-01 20 31294509 31294509 G C COMMD7 Missense_Mutation p.L99V 0.23 deleterious(0) probably_damaging(0.941) TCGA-EK-A2R8-01 20 31609533 31609533 C G BPIFB2 Silent p.L421L 0.43 TCGA-EK-A2R8-01 20 32357961 32357961 G C ZNF341 Missense_Mutation p.K488N 0.25 deleterious(0) possibly_damaging(0.794) TCGA-EK-A2R8-01 20 33233093 33233093 C T PIGU Missense_Mutation p.E81K 0.26 tolerated(0.43) possibly_damaging(0.61) TCGA-EK-A2R8-01 20 3684082 3684082 C T SIGLEC1 Silent p.V330V 0.27 TCGA-EK-A2R8-01 20 43955982 43955982 C T SDC4 Silent p.K173K 0.09 TCGA-EK-A2R8-01 20 44512530 44512530 G C ZSWIM1 Missense_Mutation p.W433C 0.28 tolerated(0.09) benign(0.014) TCGA-EK-A2R8-01 20 44756862 44756862 C T CD40 Silent p.I215I 0.23 TCGA-EK-A2R8-01 20 47701908 47701908 G A CSE1L Missense_Mutation p.E570K 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-EK-A2R8-01 20 47863133 47863133 C G ZNFX1 3'UTR 0.29 TCGA-EK-A2R8-01 20 58569309 58569309 C T CDH26 Silent p.F477F 0.27 TCGA-EK-A2R8-01 20 58569342 58569342 C T CDH26 Silent p.L488L 0.30 TCGA-EK-A2R8-01 21 17443607 17443607 G A LINC00478 RNA 0.43 TCGA-EK-A2R8-01 21 43786545 43786545 G T TFF1 Silent p.L20L 0.55 TCGA-EK-A2R8-01 21 47711284 47711284 C G YBEY Missense_Mutation p.P83A 0.65 tolerated(0.4) benign(0.056) TCGA-EK-A2R8-01 22 20786087 20786087 C G SCARF2 Silent p.V93V 0.27 TCGA-EK-A2R8-01 22 20905774 20905774 C T MED15 Missense_Mutation p.H70Y 0.30 tolerated(0.46) unknown(0) TCGA-EK-A2R8-01 22 21167759 21167759 C G PI4KA Missense_Mutation p.E298Q 0.28 tolerated(0.58) benign(0.002) TCGA-EK-A2R8-01 22 22277290 22277290 T C PPM1F 3'UTR 0.22 TCGA-EK-A2R8-01 22 26423494 26423494 C G MYO18B Missense_Mutation p.F2518L 0.29 tolerated(0.07) benign(0.015) TCGA-EK-A2R8-01 22 32014755 32014755 G A PISD 3'UTR 0.20 TCGA-EK-A2R8-01 22 36677455 36677455 C T MYH9 3'UTR 0.23 TCGA-EK-A2R8-01 22 37767109 37767109 C T ELFN2 3'UTR 0.36 TCGA-EK-A2R8-01 22 38822988 38822988 C T KCNJ4 Missense_Mutation p.E384K 0.39 tolerated(0.06) possibly_damaging(0.81) TCGA-EK-A2R8-01 22 39917981 39917981 C G ATF4 Missense_Mutation p.L144V 0.18 tolerated(0.19) possibly_damaging(0.692) TCGA-EK-A2R8-01 22 40061888 40061888 C G CACNA1I Silent p.L1327L 0.37 TCGA-EK-A2R8-01 22 40706860 40706860 C T TNRC6B Missense_Mutation p.P1433L 0.20 deleterious(0) possibly_damaging(0.728) TCGA-EK-A2R8-01 22 41222513 41222513 C T ST13 3'UTR 0.37 TCGA-EK-A2R8-01 22 41533715 41533715 C T EP300 Nonsense_Mutation p.Q561* 0.30 TCGA-EK-A2R8-01 22 50664587 50664587 G C TUBGCP6 Silent p.L575L 0.32 TCGA-EK-A2R8-01 2 101645967 101645967 C G TBC1D8 Missense_Mutation p.L721F 0.24 deleterious(0) benign(0.063) TCGA-EK-A2R8-01 2 103378624 103378624 C G TMEM182 5'UTR 0.45 TCGA-EK-A2R8-01 2 11945248 11945248 C T LPIN1 Nonsense_Mutation p.Q788* 0.33 TCGA-EK-A2R8-01 2 128064900 128064900 C G MAP3K2 3'UTR 0.21 TCGA-EK-A2R8-01 2 148687126 148687126 G C ACVR2A 3'UTR 0.21 TCGA-EK-A2R8-01 2 161130832 161130832 C T RBMS1 3'UTR 0.61 TCGA-EK-A2R8-01 2 171570153 171570153 C G LINC01124 Missense_Mutation p.Q267H 0.23 unknown(0) TCGA-EK-A2R8-01 2 171675139 171675139 C G GAD1 Missense_Mutation p.S13W 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-EK-A2R8-01 2 177037336 177037336 G C HOXD3 3'UTR 0.40 TCGA-EK-A2R8-01 2 179410173 179410173 T C TTN Silent p.A31888A 0.23 TCGA-EK-A2R8-01 2 189897828 189897828 G T COL5A2 3'UTR 0.19 TCGA-EK-A2R8-01 2 202244481 202244481 C T TRAK2 3'UTR 0.16 TCGA-EK-A2R8-01 2 20648496 20648496 C T RHOB 3'UTR 0.26 TCGA-EK-A2R8-01 2 208477923 208477923 C T METTL21A Silent p.V168V 0.20 TCGA-EK-A2R8-01 2 208986568 208986568 G A CRYGD Silent p.F118F 0.16 TCGA-EK-A2R8-01 2 210517948 210517948 G A MAP2 Silent p.P18P 0.32 TCGA-EK-A2R8-01 2 210856956 210856956 G C UNC80 Missense_Mutation p.K3061N 0.17 probably_damaging(0.99) TCGA-EK-A2R8-01 2 217234646 217234646 G A MARCH4 Missense_Mutation p.S113F 0.14 deleterious_low_confidence(0.03) benign(0.096) TCGA-EK-A2R8-01 2 217541377 217541377 G C IGFBP5 3'UTR 0.17 TCGA-EK-A2R8-01 2 223160330 223160330 C G PAX3 Missense_Mutation p.R123T 0.34 deleterious(0.03) benign(0.038) TCGA-EK-A2R8-01 2 223160343 223160343 C T PAX3 Missense_Mutation p.E119K 0.36 tolerated(0.09) benign(0.203) TCGA-EK-A2R8-01 2 239306205 239306205 C T TRAF3IP1 Missense_Mutation p.P599S 0.34 deleterious(0.05) probably_damaging(0.989) TCGA-EK-A2R8-01 2 241808657 241808657 C G AGXT Missense_Mutation p.S79C 0.32 deleterious(0.01) possibly_damaging(0.656) TCGA-EK-A2R8-01 2 241826397 241826397 C T C2orf54 3'UTR 0.16 TCGA-EK-A2R8-01 2 242173271 242173271 C T HDLBP Silent p.V1084V 0.10 TCGA-EK-A2R8-01 2 31491058 31491058 C T EHD3 3'UTR 0.33 TCGA-EK-A2R8-01 2 38208440 38208440 G A RMDN2 Missense_Mutation p.E427K 0.20 tolerated(0.08) probably_damaging(0.987) TCGA-EK-A2R8-01 2 39224138 39224138 C T SOS1 Silent p.E1002E 0.45 TCGA-EK-A2R8-01 2 55544930 55544930 C G CCDC88A Missense_Mutation p.Q1123H 0.17 deleterious(0) probably_damaging(0.993) TCGA-EK-A2R8-01 2 61236108 61236108 C G PUS10 Missense_Mutation p.D57H 0.19 deleterious(0.02) benign(0.329) TCGA-EK-A2R8-01 2 63273478 63273478 C G EHBP1 3'UTR 0.19 TCGA-EK-A2R8-01 2 85529687 85529687 C G TCF7L1 Missense_Mutation p.F202L 0.15 deleterious(0) benign(0.159) TCGA-EK-A2R8-01 2 88333665 88333665 G C KRCC1 5'UTR 0.25 TCGA-EK-A2R8-01 2 95514951 95514951 C G RNU6-1320P 5'Flank 0.08 TCGA-EK-A2R8-01 2 96937109 96937109 G A CIAO1 3'UTR 0.25 TCGA-EK-A2R8-01 2 98428897 98428897 G A TMEM131 Missense_Mutation p.S617L 0.07 tolerated(0.21) benign(0.002) TCGA-EK-A2R8-01 3 113345005 113345005 C T SIDT1 Silent p.F788F 0.31 TCGA-EK-A2R8-01 3 122060283 122060283 C T CSTA Intron 0.35 TCGA-EK-A2R8-01 3 126753755 126753755 G A PLXNA1 3'UTR 0.14 TCGA-EK-A2R8-01 3 131101444 131101444 C G NUDT16 3'UTR 0.24 TCGA-EK-A2R8-01 3 150177588 150177588 G C TSC22D2 3'UTR 0.48 TCGA-EK-A2R8-01 3 157146182 157146182 G C VEPH1 Missense_Mutation p.Q209E 0.45 tolerated(0.2) benign(0.14) TCGA-EK-A2R8-01 3 169496595 169496595 C G MYNN Silent p.L102L 0.19 TCGA-EK-A2R8-01 3 195799011 195799011 T C TFRC Silent p.E149E 0.13 TCGA-EK-A2R8-01 3 32030784 32030784 G A ZNF860 Missense_Mutation p.M71I 0.30 tolerated(1) benign(0.021) TCGA-EK-A2R8-01 3 32995016 32995016 C G CCR4 Missense_Mutation p.I34M 0.23 deleterious(0.01) benign(0.017) TCGA-EK-A2R8-01 3 425540 425540 C G CHL1 Missense_Mutation p.Q740E 0.28 tolerated(1) benign(0.03) TCGA-EK-A2R8-01 3 45988864 45988864 G C CXCR6 Missense_Mutation p.K297N 0.39 tolerated(0.12) benign(0.025) TCGA-EK-A2R8-01 3 49757105 49757105 C T AMIGO3 5'UTR 0.20 TCGA-EK-A2R8-01 3 52524094 52524094 G C NISCH Missense_Mutation p.E1154Q 0.29 deleterious(0.04) probably_damaging(0.932) TCGA-EK-A2R8-01 3 52668757 52668757 G A PBRM1 Nonsense_Mutation p.Q388* 0.22 TCGA-EK-A2R8-01 3 52668791 52668791 G C PBRM1 Missense_Mutation p.I376M 0.25 tolerated(0.28) possibly_damaging(0.506) TCGA-EK-A2R8-01 3 93813015 93813015 G C NSUN3 Silent p.L166L 0.20 TCGA-EK-A2R8-01 3 97592724 97592724 G C CRYBG3 Missense_Mutation p.E896Q 0.33 TCGA-EK-A2R8-01 4 100534168 100534168 C G MTTP Silent p.L696L 0.42 TCGA-EK-A2R8-01 4 110678930 110678930 G A CFI Missense_Mutation p.S298F 0.31 tolerated(0.09) benign(0.002) TCGA-EK-A2R8-01 4 122082365 122082365 C T TNIP3 Missense_Mutation p.E102K 0.31 tolerated(0.75) benign(0.078) TCGA-EK-A2R8-01 4 159048531 159048531 C G FAM198B 3'UTR 0.24 TCGA-EK-A2R8-01 4 177605154 177605154 C T VEGFC Missense_Mutation p.E396K 0.13 tolerated(0.15) benign(0.281) TCGA-EK-A2R8-01 4 183063759 183063759 G C AC108142.1 RNA 0.10 TCGA-EK-A2R8-01 4 25848925 25848925 G A SEL1L3 Silent p.L242L 0.50 TCGA-EK-A2R8-01 4 56299069 56299069 G T CLOCK 3'UTR 0.50 TCGA-EK-A2R8-01 5 127627276 127627276 G C FBN2 Missense_Mutation p.F2079L 0.59 deleterious(0) probably_damaging(0.926) TCGA-EK-A2R8-01 5 133532517 133532517 G C PPP2CA 3'UTR 0.73 TCGA-EK-A2R8-01 5 140580506 140580506 G A PCDHB11 Missense_Mutation p.E387K 0.62 deleterious_low_confidence(0.02) benign(0.057) TCGA-EK-A2R8-01 5 140605043 140605043 G A PCDHB14 Missense_Mutation p.A656T 0.68 deleterious_low_confidence(0.01) benign(0.017) TCGA-EK-A2R8-01 5 148719829 148719829 G A AFAP1L1 3'UTR 0.50 TCGA-EK-A2R8-01 5 148719924 148719924 G A AFAP1L1 3'UTR 0.54 TCGA-EK-A2R8-01 5 155490 155490 G C PLEKHG4B Missense_Mutation p.E358Q 0.40 tolerated(0.3) possibly_damaging(0.634) TCGA-EK-A2R8-01 5 169031360 169031360 C G SPDL1 3'UTR 0.62 TCGA-EK-A2R8-01 5 171765653 171765653 C T SH3PXD2B Missense_Mutation p.R819Q 0.53 deleterious_low_confidence(0.05) benign(0.003) TCGA-EK-A2R8-01 5 177571073 177571073 C T RMND5B Missense_Mutation p.R220W 0.65 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R8-01 5 39382892 39382892 G C DAB2 Missense_Mutation p.S390C 0.49 tolerated(0.17) benign(0.016) TCGA-EK-A2R8-01 5 65440340 65440340 G C SREK1 Missense_Mutation p.E46Q 0.66 deleterious(0.02) possibly_damaging(0.877) TCGA-EK-A2R8-01 5 79373869 79373869 C G THBS4 Intron 0.58 TCGA-EK-A2R8-01 5 89940535 89940535 T C GPR98 Missense_Mutation p.V916A 0.59 benign(0.01) TCGA-EK-A2R8-01 6 111498637 111498637 C G SLC16A10 Silent p.L237L 0.33 TCGA-EK-A2R8-01 6 112025271 112025271 C T FYN Missense_Mutation p.E160K 0.19 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R8-01 6 119345270 119345270 C G FAM184A Missense_Mutation p.E290Q 0.27 deleterious(0) possibly_damaging(0.69) TCGA-EK-A2R8-01 6 12123370 12123370 A G HIVEP1 Silent p.Q1114Q 0.16 TCGA-EK-A2R8-01 6 125284464 125284464 C T RP11-510H23.1 5'Flank 0.25 TCGA-EK-A2R8-01 6 126070928 126070928 G C HEY2 Missense_Mutation p.K2N 0.11 deleterious(0) probably_damaging(0.991) TCGA-EK-A2R8-01 6 138412111 138412111 G A PERP 3'UTR 0.37 TCGA-EK-A2R8-01 6 143825369 143825369 C G FUCA2 Missense_Mutation p.E145Q 0.40 tolerated(0.15) benign(0.035) TCGA-EK-A2R8-01 6 147830478 147830478 C A SAMD5 Silent p.L138L 0.29 TCGA-EK-A2R8-01 6 151055052 151055052 G A PLEKHG1 Missense_Mutation p.A79T 0.41 tolerated(0.75) benign(0) TCGA-EK-A2R8-01 6 165848726 165848726 C T PDE10A Missense_Mutation p.G179E 0.24 tolerated(0.12) probably_damaging(0.996) TCGA-EK-A2R8-01 6 168431450 168431450 C T KIF25 Intron 0.26 TCGA-EK-A2R8-01 6 24423996 24423996 C T MRS2 3'UTR 0.32 TCGA-EK-A2R8-01 6 25773531 25773531 C G SLC17A4 Silent p.L245L 0.33 TCGA-EK-A2R8-01 6 26217568 26217568 G A HIST1H2AE Silent p.E122E 0.40 TCGA-EK-A2R8-01 6 27834714 27834714 C T HIST1H1B Silent p.P198P 0.32 TCGA-EK-A2R8-01 6 33151975 33151975 C G COL11A2 Intron 0.39 TCGA-EK-A2R8-01 6 41065114 41065114 G A NFYA Missense_Mutation p.E337K 0.36 tolerated_low_confidence(0.09) benign(0.258) TCGA-EK-A2R8-01 6 42655973 42655973 G C UBR2 Missense_Mutation p.D1625H 0.33 deleterious(0) possibly_damaging(0.64) TCGA-EK-A2R8-01 6 42936212 42936212 C T PEX6 Missense_Mutation p.E502K 0.33 deleterious(0) benign(0.201) TCGA-EK-A2R8-01 6 43143632 43143632 G A SRF Silent p.L323L 0.38 TCGA-EK-A2R8-01 6 43417850 43417850 G C ABCC10 3'UTR 0.37 TCGA-EK-A2R8-01 6 46806840 46806840 C G MEP1A Missense_Mutation p.I736M 0.22 deleterious(0) benign(0.126) TCGA-EK-A2R8-01 6 47680153 47680153 G T GPR115 Missense_Mutation p.D121Y 0.27 deleterious(0.04) possibly_damaging(0.646) TCGA-EK-A2R8-01 6 52051221 52051221 G A IL17A 5'UTR 0.30 TCGA-EK-A2R8-01 6 52902788 52902788 C T ICK Missense_Mutation p.M35I 0.14 deleterious(0) possibly_damaging(0.673) TCGA-EK-A2R8-01 6 56472808 56472808 C A DST Intron 0.20 TCGA-EK-A2R8-01 6 56472850 56472850 C G DST Intron 0.14 TCGA-EK-A2R8-01 6 71377740 71377740 C G SMAP1 Missense_Mutation p.S5C 0.15 deleterious(0) probably_damaging(0.999) TCGA-EK-A2R8-01 7 104753433 104753433 C T KMT2E Missense_Mutation p.H1744Y 0.32 deleterious_low_confidence(0) benign(0.152) TCGA-EK-A2R8-01 7 107434312 107434312 T C SLC26A3 Missense_Mutation p.K49R 0.35 tolerated(0.76) benign(0.032) TCGA-EK-A2R8-01 7 128498593 128498593 C T FLNC 3'UTR 0.40 TCGA-EK-A2R8-01 7 128498602 128498602 C T FLNC 3'UTR 0.40 TCGA-EK-A2R8-01 7 135282130 135282130 G A NUP205 Silent p.V676V 0.27 TCGA-EK-A2R8-01 7 142334863 142334863 G A TRBV20-1 Silent p.V95V 0.12 TCGA-EK-A2R8-01 7 157023913 157023913 C T UBE3C Silent p.F791F 0.60 TCGA-EK-A2R8-01 7 26230678 26230678 C T HNRNPA2B1 3'UTR 0.33 TCGA-EK-A2R8-01 7 4917599 4917599 G A RADIL Nonsense_Mutation p.Q58* 0.32 TCGA-EK-A2R8-01 7 5983603 5983603 G A RSPH10B Silent p.L516L 0.09 TCGA-EK-A2R8-01 7 65439567 65439567 T C GUSB Missense_Mutation p.D397G 0.15 deleterious(0.01) benign(0.419) TCGA-EK-A2R8-01 7 66274797 66274797 G C KCTD7 3'UTR 0.22 TCGA-EK-A2R8-01 7 6820458 6820458 C T RSPH10B2 Silent p.L516L 0.31 TCGA-EK-A2R8-01 7 87032462 87032462 C T ABCB4 Missense_Mutation p.E1215K 0.26 deleterious(0) benign(0.27) TCGA-EK-A2R8-01 7 97823402 97823402 C T LMTK2 Missense_Mutation p.L1209F 0.30 tolerated(0.37) possibly_damaging(0.702) TCGA-EK-A2R8-01 8 1876769 1876769 G A ARHGEF10 Silent p.V958V 0.32 TCGA-EK-A2R8-01 8 20106373 20106373 G C LZTS1 3'UTR 0.12 TCGA-EK-A2R8-01 8 22009485 22009485 C G LGI3 Missense_Mutation p.D175H 0.26 deleterious(0) probably_damaging(0.998) TCGA-EK-A2R8-01 8 23054708 23054708 C G TNFRSF10A Missense_Mutation p.E342Q 0.25 tolerated(0.14) benign(0.297) TCGA-EK-A2R8-01 8 24324484 24324484 G A ADAM7 Missense_Mutation p.E188K 0.38 tolerated(0.58) benign(0.002) TCGA-EK-A2R8-01 8 28748135 28748135 C T HMBOX1 5'UTR 0.31 TCGA-EK-A2R8-01 8 52320693 52320693 G A PXDNL Missense_Mutation p.S1164L 0.30 tolerated(0.3) benign(0.196) TCGA-EK-A2R8-01 8 59547876 59547876 C G NSMAF Missense_Mutation p.R126T 0.31 tolerated(0.47) benign(0.003) TCGA-EK-A2R8-01 8 67355064 67355068 AGATT - ADHFE1 Frame_Shift_Del p.D44Cfs*3 0.24 TCGA-EK-A2R8-01 8 8750098 8750098 G A MFHAS1 Silent p.L157L 0.29 TCGA-EK-A2R8-01 8 91637043 91637043 C G TMEM64 3'UTR 0.21 TCGA-EK-A2R8-01 8 97847330 97847330 C T CPQ Missense_Mutation p.T188M 0.20 tolerated(0.24) benign(0.011) TCGA-EK-A2R8-01 9 103065971 103065971 G A TEX10 Silent p.L873L 0.31 TCGA-EK-A2R8-01 9 110087185 110087185 G C RAD23B Missense_Mutation p.G339A 0.35 tolerated(0.6) possibly_damaging(0.505) TCGA-EK-A2R8-01 9 114305025 114305025 G A ZNF483 Missense_Mutation p.E604K 0.27 deleterious(0) possibly_damaging(0.57) TCGA-EK-A2R8-01 9 123917162 123917162 G A CNTRL Missense_Mutation p.E1446K 0.27 probably_damaging(0.947) TCGA-EK-A2R8-01 9 127217404 127217404 G A GPR144 Missense_Mutation p.E483K 0.41 tolerated(0.11) benign(0.006) TCGA-EK-A2R8-01 9 131071960 131071960 G A TRUB2 Nonsense_Mutation p.Q289* 0.41 TCGA-EK-A2R8-01 9 132665171 132665171 G A FNBP1 Nonsense_Mutation p.R469* 0.27 TCGA-EK-A2R8-01 9 134362574 134362574 C T PRRC2B Silent p.I1959I 0.25 TCGA-EK-A2R8-01 9 134363264 134363264 C T PRRC2B Silent p.P2002P 0.35 TCGA-EK-A2R8-01 9 135278098 135278098 G A TTF1 Silent p.F37F 0.36 TCGA-EK-A2R8-01 9 139088364 139088364 C G LHX3 3'UTR 0.36 TCGA-EK-A2R8-01 9 139735412 139735412 G C RABL6 3'UTR 0.35 TCGA-EK-A2R8-01 9 139929272 139929272 G C C9orf139 Missense_Mutation p.L113F 0.21 tolerated_low_confidence(0.2) possibly_damaging(0.765) TCGA-EK-A2R8-01 9 139929414 139929414 G C C9orf139 Missense_Mutation p.E161Q 0.29 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-EK-A2R8-01 9 140348844 140348844 C G NSMF Missense_Mutation p.Q277H 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-EK-A2R8-01 9 15490010 15490010 G A PSIP1 Missense_Mutation p.P88S 0.31 deleterious(0) benign(0.068) TCGA-EK-A2R8-01 9 18574130 18574130 G A ADAMTSL1 Missense_Mutation p.D114N 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-EK-A2R8-01 9 19082873 19082873 G A HAUS6 Nonsense_Mutation p.Q290* 0.23 TCGA-EK-A2R8-01 9 22447060 22447060 C G DMRTA1 5'UTR 0.27 TCGA-EK-A2R8-01 9 33466916 33466916 C G NOL6 Silent p.L648L 0.25 TCGA-EK-A2R8-01 9 35748398 35748398 G C GBA2 Missense_Mutation p.Q102E 0.31 tolerated(0.28) benign(0.021) TCGA-EK-A2R8-01 9 4741035 4741035 G C AK3 Missense_Mutation p.S18W 0.28 deleterious(0) probably_damaging(1) TCGA-EK-A2R8-01 9 745829 745829 T G KANK1 3'UTR 0.16 TCGA-EK-A2R8-01 9 74817635 74817635 G A GDA Missense_Mutation p.E121K 0.33 tolerated(0.39) benign(0.012) TCGA-EK-A2R8-01 9 74970853 74970853 C T ZFAND5 3'UTR 0.39 TCGA-EK-A2R8-01 9 75315537 75315537 G A TMC1 Missense_Mutation p.E114K 0.34 tolerated(1) benign(0.004) TCGA-EK-A2R8-01 9 77676397 77676397 G A NMRK1 3'UTR 0.42 TCGA-EK-A2R8-01 9 79929019 79929019 G A VPS13A Missense_Mutation p.S1409N 0.40 tolerated(0.71) benign(0.011) TCGA-EK-A2R8-01 9 84606145 84606145 G A SPATA31D1 Missense_Mutation p.E254K 0.30 deleterious(0.03) benign(0.009) TCGA-EK-A2R8-01 X 100087788 100087788 G T CSTF2 Missense_Mutation p.G366V 0.30 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-EK-A2R8-01 X 101911353 101911353 G C GPRASP1 Missense_Mutation p.E838Q 0.17 tolerated(0.12) possibly_damaging(0.796) TCGA-EK-A2R8-01 X 106171764 106171764 G C CLDN2 Missense_Mutation p.M102I 0.36 deleterious(0) possibly_damaging(0.902) TCGA-EK-A2R8-01 X 106173298 106173298 G A CLDN2 3'UTR 0.44 TCGA-EK-A2R8-01 X 11161938 11161938 G T ARHGAP6 Intron 0.32 TCGA-EK-A2R8-01 X 118123583 118123583 C A LONRF3 Nonsense_Mutation p.C424* 0.29 TCGA-EK-A2R8-01 X 118893624 118893624 G A SOWAHD 3'UTR 0.29 TCGA-EK-A2R8-01 X 119678348 119678348 C G CUL4B Silent p.L375L 0.36 TCGA-EK-A2R8-01 X 136113039 136113039 C T GPR101 Silent p.Q265Q 0.31 TCGA-EK-A2R8-01 X 140335618 140335618 C A SPANXC 3'UTR 0.30 TCGA-EK-A2R8-01 X 14599358 14599358 G A GLRA2 Silent p.A108A 0.50 TCGA-EK-A2R8-01 X 153176611 153176611 C G ARHGAP4 Missense_Mutation p.E565D 0.32 deleterious(0) possibly_damaging(0.863) TCGA-EK-A2R8-01 X 17746202 17746202 C T NHS Nonsense_Mutation p.Q1305* 0.38 TCGA-EK-A2R8-01 X 19024193 19024193 C T GPR64 Missense_Mutation p.C589Y 0.32 deleterious(0) probably_damaging(1) TCGA-EK-A2R8-01 X 21875258 21875258 T A YY2 Missense_Mutation p.L219H 0.19 deleterious(0.01) probably_damaging(0.976) TCGA-EK-A2R8-01 X 23019162 23019162 T C DDX53 Missense_Mutation p.Y330H 0.37 deleterious(0) probably_damaging(0.985) TCGA-EK-A2R8-01 X 30269706 30269706 G C MAGEB1 3'UTR 0.24 TCGA-EK-A2R8-01 X 39934233 39934233 C T BCOR Missense_Mutation p.M122I 0.37 tolerated(0.54) benign(0) TCGA-EK-A2R8-01 X 57621320 57621320 C A ZXDB 3'UTR 0.37 TCGA-EK-A2R8-01 X 92966886 92966886 G T FAM133A 3'UTR 0.20 TCGA-EK-A2R9-01 10 104196339 104196339 C T CUEDC2 5'Flank 0.47 TCGA-EK-A2R9-01 10 123246890 123246890 C T FGFR2 Missense_Mutation p.V680I 0.33 tolerated(0.3) benign(0.022) TCGA-EK-A2R9-01 10 81075678 81075678 G C ZMIZ1 3'UTR 0.53 TCGA-EK-A2R9-01 11 56237174 56237174 T C OR5M3 Missense_Mutation p.E267G 0.41 deleterious(0.01) benign(0.019) TCGA-EK-A2R9-01 11 61665640 61665640 C T RAB3IL1 3'UTR 0.37 TCGA-EK-A2R9-01 11 64622129 64622129 G A EHD1 Silent p.G427G 0.38 TCGA-EK-A2R9-01 11 70049620 70049620 G T FADD Nonsense_Mutation p.E19* 0.45 TCGA-EK-A2R9-01 12 119592176 119592176 G A SRRM4 Missense_Mutation p.R507Q 0.07 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-EK-A2R9-01 12 120635255 120635255 T C RPLP0 Missense_Mutation p.N221S 0.08 tolerated(0.08) benign(0.032) TCGA-EK-A2R9-01 12 133378543 133378543 C T GOLGA3 Missense_Mutation p.R537Q 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-EK-A2R9-01 12 20522788 20522788 C T PDE3A Silent p.A190A 0.16 TCGA-EK-A2R9-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.30 deleterious(0) possibly_damaging(0.479) TCGA-EK-A2R9-01 12 41419115 41419115 T C CNTN1 Missense_Mutation p.I896T 0.37 tolerated(0.62) benign(0.238) TCGA-EK-A2R9-01 12 49169780 49169780 G A ADCY6 Missense_Mutation p.S591F 0.31 tolerated(0.25) possibly_damaging(0.748) TCGA-EK-A2R9-01 12 57985144 57985144 C T PIP4K2C Silent p.F24F 0.40 TCGA-EK-A2R9-01 12 8206192 8206192 C T FOXJ2 3'UTR 0.47 TCGA-EK-A2R9-01 12 82750802 82750802 A T CCDC59 Nonsense_Mutation p.L134* 0.30 TCGA-EK-A2R9-01 13 107821075 107821075 C G FAM155A 3'UTR 0.47 TCGA-EK-A2R9-01 15 102294272 102294272 C G DNM1P47 RNA 0.18 TCGA-EK-A2R9-01 15 79761358 79761358 G T KIAA1024 3'UTR 0.42 TCGA-EK-A2R9-01 15 91161147 91161147 A G CRTC3 Missense_Mutation p.N216D 0.45 tolerated(0.05) benign(0.158) TCGA-EK-A2R9-01 16 67763658 67763658 A T RANBP10 Missense_Mutation p.S358T 0.40 tolerated(0.16) probably_damaging(0.991) TCGA-EK-A2R9-01 16 68024864 68024864 C T DPEP2 Missense_Mutation p.V257I 0.36 tolerated(0.6) benign(0.209) TCGA-EK-A2R9-01 16 84101352 84101352 G A MBTPS1 Silent p.N716N 0.36 TCGA-EK-A2R9-01 17 15534963 15534963 C G RP11-385D13.1 Missense_Mutation p.E361Q 0.59 tolerated_low_confidence(0.06) probably_damaging(0.964) TCGA-EK-A2R9-01 18 346550 346550 G A COLEC12 Missense_Mutation p.R358W 0.25 deleterious(0.02) possibly_damaging(0.898) TCGA-EK-A2R9-01 19 14070695 14070695 C T DCAF15 Silent p.I476I 0.47 TCGA-EK-A2R9-01 1 12942144 12942144 G T PRAMEF4 Missense_Mutation p.P136T 0.37 tolerated(0.25) benign(0.007) TCGA-EK-A2R9-01 1 152648817 152648817 G A LCE2C Missense_Mutation p.C109Y 0.34 deleterious_low_confidence(0) unknown(0) TCGA-EK-A2R9-01 1 158747044 158747044 G A OR6N2 Missense_Mutation p.R128W 0.41 tolerated(0.1) benign(0.014) TCGA-EK-A2R9-01 1 16255855 16255855 G A SPEN Silent p.V1040V 0.36 TCGA-EK-A2R9-01 1 182791267 182791268 - A NPL Frame_Shift_Ins p.T227Dfs*9 0.24 TCGA-EK-A2R9-01 1 226455783 226455783 G A LIN9 Missense_Mutation p.R247C 0.29 deleterious(0) probably_damaging(0.993) TCGA-EK-A2R9-01 1 237957284 237957284 G A RYR2 Missense_Mutation p.V4634I 0.38 possibly_damaging(0.698) TCGA-EK-A2R9-01 1 240071630 240071630 C T CHRM3 Silent p.Y293Y 0.34 TCGA-EK-A2R9-01 1 33236208 33236208 C T KIAA1522 Silent p.L476L 0.50 TCGA-EK-A2R9-01 1 45484400 45484400 C T ZSWIM5 Missense_Mutation p.R1095Q 0.36 tolerated(0.06) unknown(0) TCGA-EK-A2R9-01 20 34096011 34096011 T A CEP250 Missense_Mutation p.L2300M 0.44 probably_damaging(0.985) TCGA-EK-A2R9-01 20 34173150 34173150 G A FER1L4 RNA 0.15 TCGA-EK-A2R9-01 20 4681333 4681333 C T PRNP 3'UTR 0.26 TCGA-EK-A2R9-01 20 47839534 47839534 G A DDX27 Missense_Mutation p.R125Q 0.07 deleterious(0.03) possibly_damaging(0.756) TCGA-EK-A2R9-01 21 47570313 47570313 G A FTCD Nonsense_Mutation p.R255* 0.33 TCGA-EK-A2R9-01 22 35726358 35726358 C G TOM1 Missense_Mutation p.R262G 0.38 deleterious(0) possibly_damaging(0.704) TCGA-EK-A2R9-01 22 50615969 50615969 C T PANX2 Silent p.R276R 0.36 TCGA-EK-A2R9-01 2 128335752 128335752 C T MYO7B Silent p.Y298Y 0.38 TCGA-EK-A2R9-01 2 29092602 29092602 T - TRMT61B Frame_Shift_Del p.N181Ifs*21 0.29 TCGA-EK-A2R9-01 2 40405622 40405622 G T SLC8A1 Nonsense_Mutation p.S607* 0.28 TCGA-EK-A2R9-01 2 5838998 5838998 T C SOX11 3'UTR 0.32 TCGA-EK-A2R9-01 2 73118716 73118718 CCC - SPR 3'UTR 0.47 TCGA-EK-A2R9-01 3 111983170 111983170 C T SLC9C1 Missense_Mutation p.R300H 0.40 tolerated(0.12) possibly_damaging(0.756) TCGA-EK-A2R9-01 3 169485453 169485453 G C ACTRT3 Missense_Mutation p.L296V 0.05 deleterious(0) probably_damaging(0.978) TCGA-EK-A2R9-01 3 189705337 189705337 C T LEPREL1 Silent p.P359P 0.84 TCGA-EK-A2R9-01 3 47364191 47364191 C T KLHL18 Nonsense_Mutation p.R132* 0.32 TCGA-EK-A2R9-01 4 108911065 108911065 C A HADH 5'UTR 0.53 TCGA-EK-A2R9-01 4 119552902 119552902 C G RP11-384K6.6 RNA 0.15 TCGA-EK-A2R9-01 4 138451499 138451499 G A PCDH18 Missense_Mutation p.R582C 0.67 tolerated(0.17) possibly_damaging(0.556) TCGA-EK-A2R9-01 4 47584003 47584003 C T ATP10D Silent p.I1225I 0.23 TCGA-EK-A2R9-01 4 70715163 70715163 T G SULT1E1 Missense_Mutation p.Q163P 0.36 tolerated(0.09) benign(0.179) TCGA-EK-A2R9-01 4 7774843 7774843 C T AFAP1 Intron 0.50 TCGA-EK-A2R9-01 5 137599970 137599970 A G GFRA3 Missense_Mutation p.V120A 0.46 deleterious(0) possibly_damaging(0.876) TCGA-EK-A2R9-01 5 140788801 140788801 C - PCDHGB6 Frame_Shift_Del p.P345Qfs*3 0.26 TCGA-EK-A2R9-01 5 175309568 175309568 A G CPLX2 3'UTR 0.20 TCGA-EK-A2R9-01 5 644446 644446 G C CEP72 Missense_Mutation p.L524F 0.35 deleterious(0.01) probably_damaging(0.953) TCGA-EK-A2R9-01 5 85589062 85589062 C T NBPF22P RNA 0.34 TCGA-EK-A2R9-01 6 152716766 152716766 C T SYNE1 Missense_Mutation p.E2533K 0.30 benign(0.09) TCGA-EK-A2R9-01 6 160516880 160516880 G A IGF2R Intron 0.40 TCGA-EK-A2R9-01 6 160516957 160516957 G C IGF2R Intron 0.42 TCGA-EK-A2R9-01 7 138745709 138745709 C T ZC3HAV1 Intron 0.37 TCGA-EK-A2R9-01 7 146818156 146818156 C A CNTNAP2 Silent p.V280V 0.38 TCGA-EK-A2R9-01 7 150095001 150095001 G A ZNF775 Missense_Mutation p.E478K 0.22 tolerated(0.11) possibly_damaging(0.508) TCGA-EK-A2R9-01 7 31746967 31746967 G A PPP1R17 3'UTR 0.23 TCGA-EK-A2R9-01 7 37956057 37956057 C T SFRP4 Missense_Mutation p.R28H 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-EK-A2R9-01 8 143816856 143816856 G A THEM6 Silent p.%3D 0.50 TCGA-EK-A2R9-01 X 109764159 109764159 A G TDGF1P3 RNA 0.25 TCGA-EK-A2R9-01 X 151121844 151121844 C A GABRE 3'UTR 0.16 TCGA-EK-A2R9-01 X 152815583 152815583 G A ATP2B3 Silent p.L554L 0.18 TCGA-EK-A2R9-01 X 153670141 153670141 G T GDI1 Missense_Mutation p.D331Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-EK-A2R9-01 X 27765363 27765363 C T DCAF8L2 Silent p.D117D 0.14 TCGA-EK-A2R9-01 X 30268663 30268663 C T MAGEB1 Missense_Mutation p.A18V 0.31 deleterious(0.04) benign(0.304) TCGA-EK-A2R9-01 X 37850383 37850383 C T CXorf27 Silent p.S97S 0.17 TCGA-EK-A2R9-01 X 48652558 48652558 C T GATA1 Missense_Mutation p.P410L 0.20 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-EK-A2R9-01 X 92966437 92966437 T A FAM133A 3'UTR 0.25 TCGA-EK-A2RA-01 10 111879059 111879059 G A ADD3 Missense_Mutation p.E270K 0.10 tolerated(0.26) benign(0.155) TCGA-EK-A2RA-01 10 1142135 1142135 C T WDR37 Silent p.I225I 0.23 TCGA-EK-A2RA-01 10 52067007 52067007 C G SGMS1 Missense_Mutation p.K379N 0.25 tolerated(0.47) benign(0.339) TCGA-EK-A2RA-01 10 75108220 75108220 G C TTC18 Missense_Mutation p.L104V 0.14 deleterious(0) probably_damaging(0.99) TCGA-EK-A2RA-01 10 75562497 75562497 C G NDST2 Missense_Mutation p.E821Q 0.27 tolerated(0.13) possibly_damaging(0.637) TCGA-EK-A2RA-01 10 81838622 81838622 G A TMEM254 Intron 0.22 TCGA-EK-A2RA-01 11 100863981 100863981 A G TMEM133 3'UTR 0.61 TCGA-EK-A2RA-01 11 1093677 1093677 C T MUC2 Silent p.S1832S 0.38 TCGA-EK-A2RA-01 11 117651364 117651364 C T DSCAML1 Missense_Mutation p.V130M 0.27 deleterious(0) probably_damaging(1) TCGA-EK-A2RA-01 11 119050704 119050704 C G NLRX1 Missense_Mutation p.I658M 0.33 tolerated(0.44) probably_damaging(0.997) TCGA-EK-A2RA-01 11 121060587 121060587 G A TECTA Missense_Mutation p.R2122K 0.28 deleterious_low_confidence(0.04) benign(0.112) TCGA-EK-A2RA-01 11 124790234 124790234 C G HEPACAM 3'UTR 0.15 TCGA-EK-A2RA-01 11 1908067 1908067 C T LSP1 Nonsense_Mutation p.Q403* 0.35 TCGA-EK-A2RA-01 11 40137255 40137255 C A LRRC4C Silent p.L196L 0.36 TCGA-EK-A2RA-01 11 57995864 57995864 G A OR10Q1 Nonsense_Mutation p.Q162* 0.20 TCGA-EK-A2RA-01 11 61735921 61735921 G A AP003733.1 Missense_Mutation p.D116N 0.16 unknown(0) TCGA-EK-A2RA-01 11 65653836 65653836 C T FIBP Missense_Mutation p.D157N 0.36 tolerated(0.51) benign(0.008) TCGA-EK-A2RA-01 11 66975147 66975147 G A KDM2A Silent p.Q158Q 0.43 TCGA-EK-A2RA-01 11 72415360 72415360 T C ARAP1 Missense_Mutation p.N610S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2RA-01 11 82938887 82938887 G A ANKRD42 Missense_Mutation p.D268N 0.43 tolerated(0.67) benign(0.006) TCGA-EK-A2RA-01 11 88780671 88780671 C T GRM5 Missense_Mutation p.E124K 0.21 tolerated(0.1) possibly_damaging(0.676) TCGA-EK-A2RA-01 12 117476921 117476921 G A TESC 3'UTR 0.23 TCGA-EK-A2RA-01 12 121131974 121131974 G A MLEC Missense_Mutation p.E106K 0.29 tolerated(0.65) benign(0.026) TCGA-EK-A2RA-01 12 123818692 123818692 C T SBNO1 Missense_Mutation p.D273N 0.30 tolerated(0.12) benign(0.079) TCGA-EK-A2RA-01 12 124171412 124171412 C T TCTN2 Silent p.F198F 0.11 TCGA-EK-A2RA-01 12 13066228 13066228 C G GPRC5A 3'UTR 0.21 TCGA-EK-A2RA-01 12 132681437 132681437 C A GALNT9 3'UTR 0.28 TCGA-EK-A2RA-01 12 132837615 132837615 C T GALNT9 Missense_Mutation p.R227H 0.35 tolerated(0.08) probably_damaging(0.984) TCGA-EK-A2RA-01 12 16703765 16703765 G A LMO3 3'Flank 0.24 TCGA-EK-A2RA-01 12 2997539 2997539 G C RHNO1 Missense_Mutation p.V211L 0.47 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RA-01 12 5020634 5020634 C T KCNA1 Silent p.H30H 0.23 TCGA-EK-A2RA-01 12 53451366 53451366 C T TENC1 Silent p.F297F 0.37 TCGA-EK-A2RA-01 12 62775325 62775325 G A USP15 Missense_Mutation p.E324K 0.13 tolerated(0.86) benign(0.002) TCGA-EK-A2RA-01 12 6456937 6456937 C T SCNN1A 3'UTR 0.36 TCGA-EK-A2RA-01 12 7047686 7047686 C G ATN1 Missense_Mutation p.L854V 0.24 possibly_damaging(0.736) TCGA-EK-A2RA-01 12 80266643 80266643 C T PPP1R12A Missense_Mutation p.E105K 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2RA-01 12 94691184 94691184 G A PLXNC1 Silent p.K1353K 0.21 TCGA-EK-A2RA-01 13 113510282 113510282 G A ATP11A Silent p.L767L 0.24 TCGA-EK-A2RA-01 13 20797329 20797329 G C GJB6 Nonsense_Mutation p.Y97* 0.17 TCGA-EK-A2RA-01 13 37269659 37269659 C T SERTM1 3'UTR 0.57 TCGA-EK-A2RA-01 13 49283470 49283470 G A CYSLTR2 3'UTR 0.81 TCGA-EK-A2RA-01 13 74261363 74261363 G A KLF12 3'UTR 0.45 TCGA-EK-A2RA-01 14 101416185 101416185 G C SNORD114-1 RNA 0.26 TCGA-EK-A2RA-01 14 102552664 102552664 C T HSP90AA1 Missense_Mutation p.E140K 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EK-A2RA-01 14 106320658 106320658 A G IGHM Silent p.P384P 0.25 TCGA-EK-A2RA-01 14 21542609 21542609 C T ARHGEF40 Silent p.G240G 0.34 TCGA-EK-A2RA-01 14 45373686 45373686 G A C14orf28 Missense_Mutation p.E235K 0.28 deleterious_low_confidence(0.04) benign(0.017) TCGA-EK-A2RA-01 14 50360887 50360887 C T ARF6 Missense_Mutation p.R145W 0.20 deleterious_low_confidence(0.01) benign(0.001) TCGA-EK-A2RA-01 14 74994061 74994061 G C LTBP2 Missense_Mutation p.Q793E 0.23 tolerated(0.32) benign(0.001) TCGA-EK-A2RA-01 14 90798256 90798256 G C NRDE2 5'UTR 0.43 TCGA-EK-A2RA-01 14 91701266 91701266 G C GPR68 Silent p.L43L 0.18 TCGA-EK-A2RA-01 14 94400848 94400848 G A ASB2 3'UTR 0.25 TCGA-EK-A2RA-01 14 96730151 96730151 C T BDKRB1 Silent p.I44I 0.28 TCGA-EK-A2RA-01 15 29418552 29418552 G A FAM189A1 Silent p.G382G 0.23 TCGA-EK-A2RA-01 15 44102108 44102108 C T MFAP1 Missense_Mutation p.E298K 0.26 tolerated(0.07) benign(0.173) TCGA-EK-A2RA-01 15 66782079 66782079 G A MAP2K1 Missense_Mutation p.R349K 0.27 deleterious(0) probably_damaging(0.976) TCGA-EK-A2RA-01 15 75705130 75705130 G C SIN3A Missense_Mutation p.Q244E 0.29 tolerated(1) benign(0.098) TCGA-EK-A2RA-01 15 77407290 77407290 C T PEAK1 Silent p.G1483G 0.17 TCGA-EK-A2RA-01 15 81217005 81217005 C T KIAA1199 Missense_Mutation p.S749F 0.19 deleterious(0) probably_damaging(0.95) TCGA-EK-A2RA-01 15 90799080 90799080 T C TTLL13 Missense_Mutation p.Y171H 0.69 deleterious(0) probably_damaging(0.986) TCGA-EK-A2RA-01 16 1307047 1307047 C T TPSD1 Silent p.G168G 0.33 TCGA-EK-A2RA-01 16 15832438 15832438 C G MYH11 Missense_Mutation p.M1042I 0.11 probably_damaging(0.958) TCGA-EK-A2RA-01 16 19883546 19883546 T G GPRC5B Missense_Mutation p.M208L 0.24 tolerated(0.42) probably_damaging(0.974) TCGA-EK-A2RA-01 16 20873536 20873536 C A DCUN1D3 Nonsense_Mutation p.E109* 0.21 TCGA-EK-A2RA-01 16 27472703 27472703 C T GTF3C1 Missense_Mutation p.E2100K 0.16 deleterious(0.04) benign(0.01) TCGA-EK-A2RA-01 16 27517406 27517406 C G GTF3C1 Missense_Mutation p.L528F 0.18 tolerated(0.14) possibly_damaging(0.794) TCGA-EK-A2RA-01 16 28915773 28915773 C T ATP2A1 3'UTR 0.15 TCGA-EK-A2RA-01 16 30535729 30535729 C T ZNF768 3'UTR 0.36 TCGA-EK-A2RA-01 16 31094499 31094499 G A ZNF646 3'UTR 0.19 TCGA-EK-A2RA-01 16 4415047 4415047 C G CORO7 Silent p.L285L 0.25 TCGA-EK-A2RA-01 16 53331007 53331007 G C CHD9 Missense_Mutation p.E1884Q 0.15 benign(0.171) TCGA-EK-A2RA-01 16 67692860 67692860 G A ACD Missense_Mutation p.H292Y 0.44 deleterious(0.01) benign(0.242) TCGA-EK-A2RA-01 16 70530299 70530299 G A COG4 Missense_Mutation p.P506L 0.30 deleterious(0) probably_damaging(0.995) TCGA-EK-A2RA-01 16 72110600 72110600 G A HPR Missense_Mutation p.V223M 0.22 deleterious(0) probably_damaging(0.957) TCGA-EK-A2RA-01 16 731466 731466 G A STUB1 Silent p.L129L 0.32 TCGA-EK-A2RA-01 16 84065527 84065527 C T SLC38A8 Missense_Mutation p.V193M 0.47 deleterious(0.02) possibly_damaging(0.847) TCGA-EK-A2RA-01 16 87738606 87738606 C T FLJ00104 5'UTR 0.17 TCGA-EK-A2RA-01 17 10399833 10399833 G A MYH1 Missense_Mutation p.R1564C 0.30 deleterious(0) possibly_damaging(0.883) TCGA-EK-A2RA-01 17 20799133 20799133 G A CCDC144NL Silent p.G67G 0.26 TCGA-EK-A2RA-01 17 36485781 36485781 T C GPR179 Missense_Mutation p.E1224G 0.30 deleterious(0.03) probably_damaging(0.948) TCGA-EK-A2RA-01 17 38183201 38183201 G A MED24 Silent p.I539I 0.29 TCGA-EK-A2RA-01 17 40061806 40061806 G C ACLY Silent p.L324L 0.58 TCGA-EK-A2RA-01 17 40453318 40453318 C T STAT5A Missense_Mutation p.P339S 0.29 deleterious(0.04) probably_damaging(0.989) TCGA-EK-A2RA-01 17 43907534 43907534 T C CRHR1 Missense_Mutation p.F199S 0.25 deleterious(0) probably_damaging(0.962) TCGA-EK-A2RA-01 17 6945799 6945799 G T SLC16A11 Silent p.L234L 0.38 TCGA-EK-A2RA-01 17 79845766 79845766 C G ALYREF 3'UTR 0.21 TCGA-EK-A2RA-01 17 8381688 8381688 C T MYH10 Missense_Mutation p.E1892K 0.37 probably_damaging(0.994) TCGA-EK-A2RA-01 17 9583647 9583647 C G USP43 Missense_Mutation p.Q357E 0.36 tolerated(0.39) benign(0.041) TCGA-EK-A2RA-01 18 19146125 19146125 G C ESCO1 Missense_Mutation p.S563C 0.13 deleterious(0) possibly_damaging(0.664) TCGA-EK-A2RA-01 18 46284630 46284630 G C CTIF Missense_Mutation p.E309Q 0.24 tolerated_low_confidence(0.21) benign(0.008) TCGA-EK-A2RA-01 18 61387323 61387323 C G SERPINB11 Missense_Mutation p.F184L 0.29 deleterious(0) probably_damaging(0.913) TCGA-EK-A2RA-01 18 77474779 77474779 G A CTDP1 Missense_Mutation p.R440Q 0.17 tolerated(1) benign(0.002) TCGA-EK-A2RA-01 19 10502208 10502208 C A CDC37 3'UTR 0.14 TCGA-EK-A2RA-01 19 11796196 11796196 C G ZNF833P RNA 0.24 TCGA-EK-A2RA-01 19 11797029 11797029 C G ZNF833P RNA 0.54 TCGA-EK-A2RA-01 19 13209482 13209482 C G NFIX 3'Flank 0.40 TCGA-EK-A2RA-01 19 1456386 1456386 C T APC2 Nonsense_Mutation p.Q267* 0.28 TCGA-EK-A2RA-01 19 15276805 15276805 G A NOTCH3 Silent p.I1820I 0.39 TCGA-EK-A2RA-01 19 15469820 15469820 C G AKAP8 Missense_Mutation p.L527F 0.30 deleterious(0) probably_damaging(0.991) TCGA-EK-A2RA-01 19 17692157 17692157 C T COLGALT1 Silent p.S591S 0.24 TCGA-EK-A2RA-01 19 19369519 19369519 G A HAPLN4 Silent p.N210N 0.42 TCGA-EK-A2RA-01 19 22951113 22951113 G A ZNF99 Missense_Mutation p.P74S 0.29 tolerated(0.36) benign(0.032) TCGA-EK-A2RA-01 19 30935520 30935520 G A ZNF536 Missense_Mutation p.G351S 0.17 deleterious(0.01) probably_damaging(1) TCGA-EK-A2RA-01 19 31766132 31766132 C T TSHZ3 3'UTR 0.26 TCGA-EK-A2RA-01 19 34718669 34718669 G A LSM14A 3'UTR 0.19 TCGA-EK-A2RA-01 19 3759797 3759797 C T APBA3 Missense_Mutation p.E156K 0.23 tolerated(0.06) possibly_damaging(0.676) TCGA-EK-A2RA-01 19 38990352 38990352 C T RYR1 Missense_Mutation p.R2369W 0.26 possibly_damaging(0.633) TCGA-EK-A2RA-01 19 40902578 40902578 C T PRX Missense_Mutation p.E561K 0.16 tolerated(0.17) possibly_damaging(0.486) TCGA-EK-A2RA-01 19 41351907 41351907 G C CYP2A6 Silent p.T309T 0.16 TCGA-EK-A2RA-01 19 41352937 41352937 G A CYP2A6 Missense_Mutation p.S225L 0.19 probably_damaging(0.923) TCGA-EK-A2RA-01 19 41727811 41727811 G A AXL Missense_Mutation p.E146K 0.05 deleterious(0.01) benign(0.097) TCGA-EK-A2RA-01 19 42891379 42891379 C G CNFN Missense_Mutation p.D89H 0.18 deleterious(0) probably_damaging(1) TCGA-EK-A2RA-01 19 43999435 43999435 G A PHLDB3 Silent p.F336F 0.18 TCGA-EK-A2RA-01 19 46375406 46375406 C G FOXA3 Missense_Mutation p.S48C 0.18 deleterious(0.04) unknown(0) TCGA-EK-A2RA-01 19 46887119 46887119 C T PPP5C Missense_Mutation p.S261L 0.09 deleterious(0) possibly_damaging(0.706) TCGA-EK-A2RA-01 19 49377387 49377387 C G PPP1R15A Silent p.L299L 0.15 TCGA-EK-A2RA-01 19 49464946 49464946 C T BAX 3'UTR 0.21 TCGA-EK-A2RA-01 19 51125727 51125727 C G SYT3 3'UTR 0.10 TCGA-EK-A2RA-01 19 51132723 51132723 A - SYT3 Frame_Shift_Del p.F370Sfs*81 0.38 TCGA-EK-A2RA-01 19 56733133 56733133 G T ZSCAN5A Missense_Mutation p.H434Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RA-01 19 57175591 57175591 G A ZNF835 Missense_Mutation p.R326C 0.13 deleterious(0) probably_damaging(0.977) TCGA-EK-A2RA-01 19 7743008 7743008 C T C19orf59 Missense_Mutation p.P68L 0.44 tolerated(0.07) benign(0.388) TCGA-EK-A2RA-01 19 7964601 7964601 C G AC010336.1 Missense_Mutation p.L222F 0.62 possibly_damaging(0.773) TCGA-EK-A2RA-01 19 7977052 7977052 G A MAP2K7 Silent p.R366R 0.38 TCGA-EK-A2RA-01 19 7978326 7978326 G A MAP2K7 3'UTR 0.28 TCGA-EK-A2RA-01 19 9491916 9491916 G A ZNF177 Missense_Mutation p.M303I 0.29 tolerated(0.64) benign(0.009) TCGA-EK-A2RA-01 1 110921794 110921794 G C SLC16A4 Missense_Mutation p.I237M 0.11 tolerated(0.22) benign(0.027) TCGA-EK-A2RA-01 1 111860363 111860363 A C CHIA Missense_Mutation p.T181P 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-EK-A2RA-01 1 12202343 12202343 G A TNFRSF8 Splice_Site p.X515_splice 0.11 TCGA-EK-A2RA-01 1 1264222 1264222 G A GLTPD1 3'UTR 0.17 TCGA-EK-A2RA-01 1 1267979 1267979 G C TAS1R3 Missense_Mutation p.E356D 0.05 tolerated(0.3) benign(0.037) TCGA-EK-A2RA-01 1 144911895 144911895 G C PDE4DIP Silent p.P738P 0.10 TCGA-EK-A2RA-01 1 152287815 152287815 C G FLG Missense_Mutation p.E40Q 0.12 possibly_damaging(0.674) TCGA-EK-A2RA-01 1 154687452 154687452 G A KCNN3 Missense_Mutation p.R577W 0.17 deleterious(0) probably_damaging(0.992) TCGA-EK-A2RA-01 1 156354578 156354578 G A RHBG Missense_Mutation p.R440Q 0.48 benign(0) TCGA-EK-A2RA-01 1 156508623 156508623 C G IQGAP3 Missense_Mutation p.E1087Q 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2RA-01 1 161600870 161600870 G C FCGR3B Silent p.L41L 0.14 TCGA-EK-A2RA-01 1 161696234 161696234 G C FCRLB Intron 0.09 TCGA-EK-A2RA-01 1 16271698 16271698 C T ZBTB17 Splice_Site p.X221_splice 0.10 TCGA-EK-A2RA-01 1 170993874 170993874 G C MROH9 Missense_Mutation p.E716Q 0.16 tolerated(0.16) probably_damaging(1) TCGA-EK-A2RA-01 1 176762738 176762738 C G PAPPA2 Missense_Mutation p.P1688R 0.17 deleterious(0) probably_damaging(0.939) TCGA-EK-A2RA-01 1 19216523 19216523 G A ALDH4A1 Nonsense_Mutation p.R47* 0.12 TCGA-EK-A2RA-01 1 202743752 202743752 G A KDM5B Nonsense_Mutation p.Q132* 0.12 TCGA-EK-A2RA-01 1 202936328 202936328 C T CYB5R1 Silent p.G2G 0.21 TCGA-EK-A2RA-01 1 20809052 20809052 G A CAMK2N1 3'UTR 0.53 TCGA-EK-A2RA-01 1 228589841 228589841 C G TRIM11 Missense_Mutation p.E144Q 0.10 tolerated(0.21) benign(0.323) TCGA-EK-A2RA-01 1 229567822 229567822 C G ACTA1 Missense_Mutation p.E243Q 0.10 deleterious_low_confidence(0.02) probably_damaging(0.912) TCGA-EK-A2RA-01 1 229773070 229773070 T C URB2 Silent p.L904L 0.12 TCGA-EK-A2RA-01 1 229773087 229773087 C G URB2 Silent p.L909L 0.18 TCGA-EK-A2RA-01 1 235294896 235294896 C G RBM34 3'UTR 0.25 TCGA-EK-A2RA-01 1 235294965 235294965 C T RBM34 3'UTR 0.19 TCGA-EK-A2RA-01 1 246954062 246954062 C T RP11-439E19.3 RNA 0.14 TCGA-EK-A2RA-01 1 24768628 24768628 G A NIPAL3 Silent p.L82L 0.24 TCGA-EK-A2RA-01 1 2526265 2526265 C T MMEL1 Missense_Mutation p.S551N 0.11 tolerated(0.53) possibly_damaging(0.69) TCGA-EK-A2RA-01 1 28415061 28415061 G C EYA3 5'UTR 0.19 TCGA-EK-A2RA-01 1 31230622 31230622 G A LAPTM5 5'UTR 0.48 TCGA-EK-A2RA-01 1 32280449 32280449 G C SPOCD1 Silent p.L162L 0.25 TCGA-EK-A2RA-01 1 33765680 33765680 C G ZNF362 3'UTR 0.11 TCGA-EK-A2RA-01 1 34204807 34204807 C T CSMD2 Missense_Mutation p.E728K 0.08 deleterious(0.01) possibly_damaging(0.85) TCGA-EK-A2RA-01 1 38279640 38279647 GAGTAGAA - MTF1 3'UTR 0.17 TCGA-EK-A2RA-01 1 46032303 46032303 C G AKR1A1 Missense_Mutation p.I49M 0.18 tolerated(0.05) benign(0.027) TCGA-EK-A2RA-01 1 54497397 54497397 A G TMEM59 3'UTR 0.12 TCGA-EK-A2RA-01 1 67705952 67705952 C T IL23R Missense_Mutation p.S379L 0.12 deleterious(0) benign(0.008) TCGA-EK-A2RA-01 1 70385044 70385044 C T LRRC7 Intron 0.10 TCGA-EK-A2RA-01 1 7887466 7887466 G A PER3 Missense_Mutation p.G818E 0.10 tolerated(0.87) probably_damaging(0.972) TCGA-EK-A2RA-01 1 7890188 7890188 G A PER3 Missense_Mutation p.E1052K 0.13 tolerated(0.3) benign(0.09) TCGA-EK-A2RA-01 1 91182630 91182630 C T BARHL2 Silent p.A41A 0.13 TCGA-EK-A2RA-01 1 94564508 94564508 C T ABCA4 Missense_Mutation p.A204T 0.83 tolerated(0.21) probably_damaging(0.995) TCGA-EK-A2RA-01 20 24929951 24929952 - C CST7 5'UTR 0.17 TCGA-EK-A2RA-01 20 2597838 2597838 A G TMC2 Silent p.K687K 0.12 TCGA-EK-A2RA-01 20 30797944 30797944 G C POFUT1 Missense_Mutation p.L65F 0.13 deleterious(0) probably_damaging(1) TCGA-EK-A2RA-01 20 31463829 31463829 C T EFCAB8 Silent p.D102D 0.11 TCGA-EK-A2RA-01 20 33603935 33603935 C T TRPC4AP Missense_Mutation p.R409K 0.26 tolerated(0.77) benign(0.005) TCGA-EK-A2RA-01 20 36375019 36375019 C G CTNNBL1 Intron 0.08 TCGA-EK-A2RA-01 20 39831615 39831615 C T ZHX3 Missense_Mutation p.E648K 0.13 deleterious(0.05) probably_damaging(1) TCGA-EK-A2RA-01 20 40044128 40044128 C T CHD6 Missense_Mutation p.G2213R 0.12 tolerated_low_confidence(0.11) probably_damaging(1) TCGA-EK-A2RA-01 20 42973902 42973902 G A R3HDML Splice_Site p.X172_splice 0.08 TCGA-EK-A2RA-01 20 52183924 52183924 G C ZNF217 3'UTR 0.18 TCGA-EK-A2RA-01 20 54974255 54974255 C G CSTF1 Nonsense_Mutation p.S293* 0.11 TCGA-EK-A2RA-01 20 62178747 62178747 C T SRMS Missense_Mutation p.G24S 0.19 tolerated(0.43) benign(0.005) TCGA-EK-A2RA-01 20 62293291 62293291 C G RTEL1 Silent p.S130S 0.16 TCGA-EK-A2RA-01 20 62321665 62321665 C T RTEL1 Missense_Mutation p.R786W 0.18 deleterious(0.03) benign(0.021) TCGA-EK-A2RA-01 20 62608706 62608706 C T SAMD10 Missense_Mutation p.E49K 0.21 deleterious(0) probably_damaging(0.936) TCGA-EK-A2RA-01 21 32015352 32015352 C A KRTAP20-3 3'UTR 0.23 TCGA-EK-A2RA-01 21 34948919 34948919 C G SON 3'UTR 0.12 TCGA-EK-A2RA-01 21 38884448 38884448 C T DYRK1A Missense_Mutation p.P636S 0.08 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-EK-A2RA-01 21 44273714 44273714 G A WDR4 Silent p.L314L 0.17 TCGA-EK-A2RA-01 21 44424445 44424445 G A PKNOX1 5'UTR 0.08 TCGA-EK-A2RA-01 22 18314623 18314623 C A MICAL3 Nonsense_Mutation p.E1018* 0.20 TCGA-EK-A2RA-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.36 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RA-01 22 23165518 23165518 C T IGLV2-8 Missense_Mutation p.S30F 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-EK-A2RA-01 22 24615787 24615787 C G GGT5 3'UTR 0.42 TCGA-EK-A2RA-01 22 29755894 29755894 C A AP1B1 Missense_Mutation p.K66N 0.29 deleterious(0) probably_damaging(1) TCGA-EK-A2RA-01 22 29833658 29833658 C T RFPL1 5'Flank 0.45 TCGA-EK-A2RA-01 22 31303592 31303592 C G OSBP2 3'UTR 0.34 TCGA-EK-A2RA-01 22 38864118 38864118 A T KDELR3 5'UTR 0.26 TCGA-EK-A2RA-01 22 40677147 40677147 G C TNRC6B Missense_Mutation p.D1146H 0.24 tolerated(0.09) probably_damaging(0.99) TCGA-EK-A2RA-01 22 41166798 41166798 C T SLC25A17 3'UTR 0.15 TCGA-EK-A2RA-01 22 50686384 50686384 A G HDAC10 Silent p.V424V 0.26 TCGA-EK-A2RA-01 22 50726395 50726395 G C PLXNB2 Silent p.P484P 0.32 TCGA-EK-A2RA-01 2 106471654 106471654 C A NCK2 Silent p.A45A 0.34 TCGA-EK-A2RA-01 2 113498516 113498516 C T CKAP2L Missense_Mutation p.E631K 0.51 deleterious(0.01) possibly_damaging(0.559) TCGA-EK-A2RA-01 2 113498523 113498523 C T CKAP2L Silent p.K628K 0.52 TCGA-EK-A2RA-01 2 113992973 113992973 G C PAX8 Nonsense_Mutation p.S362* 0.21 TCGA-EK-A2RA-01 2 116600538 116600538 C G DPP10 3'Flank 0.16 TCGA-EK-A2RA-01 2 167298100 167298100 C G SCN7A Missense_Mutation p.E655Q 0.21 tolerated(0.05) benign(0.011) TCGA-EK-A2RA-01 2 178482347 178482347 G A TTC30A Silent p.F361F 0.22 TCGA-EK-A2RA-01 2 180634480 180634480 C T ZNF385B Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) possibly_damaging(0.48) TCGA-EK-A2RA-01 2 187351166 187351166 G C ZC3H15 Missense_Mutation p.K19N 0.29 deleterious(0) possibly_damaging(0.788) TCGA-EK-A2RA-01 2 212566750 212566750 G C ERBB4 Silent p.L477L 0.17 TCGA-EK-A2RA-01 2 215865463 215865463 G A ABCA12 Nonsense_Mutation p.Q1049* 0.24 TCGA-EK-A2RA-01 2 220342149 220342149 G C SPEG Missense_Mutation p.E1571Q 0.28 probably_damaging(0.999) TCGA-EK-A2RA-01 2 228419374 228419374 G A AGFG1 3'Flank 0.16 TCGA-EK-A2RA-01 2 228786123 228786123 C T DAW1 Silent p.F353F 0.33 TCGA-EK-A2RA-01 2 228860311 228860311 G T SPHKAP Missense_Mutation p.S1516R 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2RA-01 2 233244519 233244519 C T ALPP Missense_Mutation p.S177L 0.13 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RA-01 2 234296818 234296818 C T DGKD Intron 0.23 TCGA-EK-A2RA-01 2 234296819 234296819 A T DGKD Intron 0.23 TCGA-EK-A2RA-01 2 240984708 240984708 C T OR6B3 Missense_Mutation p.R261Q 0.35 deleterious(0.04) possibly_damaging(0.799) TCGA-EK-A2RA-01 2 242163074 242163074 C T ANO7 Intron 0.37 TCGA-EK-A2RA-01 2 242613013 242613013 C T ATG4B 3'UTR 0.23 TCGA-EK-A2RA-01 2 24927964 24927964 G A NCOA1 Missense_Mutation p.R320H 0.13 tolerated(0.68) benign(0.075) TCGA-EK-A2RA-01 2 27845331 27845331 G C ZNF512 3'UTR 0.10 TCGA-EK-A2RA-01 2 31570422 31570422 G A XDH Missense_Mutation p.S1081F 0.11 deleterious(0) probably_damaging(1) TCGA-EK-A2RA-01 2 32743990 32743990 C T BIRC6 Missense_Mutation p.S3867L 0.19 benign(0.031) TCGA-EK-A2RA-01 2 39030019 39030019 C T DHX57 Silent p.E1285E 0.10 TCGA-EK-A2RA-01 2 46414345 46414345 C G PRKCE 3'UTR 0.17 TCGA-EK-A2RA-01 2 55071220 55071220 G A EML6 Missense_Mutation p.R295H 0.34 tolerated(0.55) benign(0.005) TCGA-EK-A2RA-01 2 55253894 55253894 G A RTN4 Silent p.F447F 0.15 TCGA-EK-A2RA-01 2 69685819 69685819 G A RP11-427H3.3 RNA 0.14 TCGA-EK-A2RA-01 2 73491453 73491453 C T FBXO41 Missense_Mutation p.A587T 0.16 deleterious(0) probably_damaging(0.994) TCGA-EK-A2RA-01 2 86709185 86709185 C G KDM3A Missense_Mutation p.S882C 0.19 deleterious(0) possibly_damaging(0.847) TCGA-EK-A2RA-01 2 95542304 95542304 G A TEKT4 Silent p.L366L 0.11 TCGA-EK-A2RA-01 2 97633265 97633265 G T FAM178B Silent p.P242P 0.31 TCGA-EK-A2RA-01 3 100645270 100645270 C G ABI3BP Missense_Mutation p.L52F 0.20 tolerated(0.05) possibly_damaging(0.587) TCGA-EK-A2RA-01 3 101312116 101312116 C T PCNP 3'UTR 0.18 TCGA-EK-A2RA-01 3 10290742 10290742 A C TATDN2 5'UTR 0.19 TCGA-EK-A2RA-01 3 10368046 10368046 C G ATP2B2 3'UTR 0.12 TCGA-EK-A2RA-01 3 10413730 10413730 C T ATP2B2 Missense_Mutation p.M474I 0.13 deleterious(0.01) benign(0.011) TCGA-EK-A2RA-01 3 113367600 113367600 G A KIAA2018 3'UTR 0.11 TCGA-EK-A2RA-01 3 122634439 122634439 G A SEMA5B Silent p.F666F 0.14 TCGA-EK-A2RA-01 3 123419497 123419497 C G MYLK Missense_Mutation p.E940Q 0.11 tolerated(0.07) possibly_damaging(0.727) TCGA-EK-A2RA-01 3 12544918 12544918 G A TSEN2 Missense_Mutation p.G156R 0.21 tolerated(0.37) benign(0.002) TCGA-EK-A2RA-01 3 12544919 12544919 G A TSEN2 Missense_Mutation p.G156E 0.20 tolerated(1) benign(0) TCGA-EK-A2RA-01 3 125649457 125649457 C T ALG1L Silent p.V97V 0.13 TCGA-EK-A2RA-01 3 129159000 129159000 C T IFT122 5'UTR 0.30 TCGA-EK-A2RA-01 3 130150430 130150430 C T COL6A5 Silent p.I1790I 0.08 TCGA-EK-A2RA-01 3 138724784 138724784 G A PRR23A Silent p.D109D 0.06 TCGA-EK-A2RA-01 3 14499524 14499524 C G SLC6A6 Silent p.L222L 0.12 TCGA-EK-A2RA-01 3 15090075 15090075 G A MRPS25 3'UTR 0.18 TCGA-EK-A2RA-01 3 151105723 151105723 C T MED12L Silent p.Y1703Y 0.10 TCGA-EK-A2RA-01 3 170201188 170201196 CAACCGACC - SLC7A14 In_Frame_Del p.G341_V343del 0.24 TCGA-EK-A2RA-01 3 186502788 186502798 CAAGACAGCCA - EIF4A2 Frame_Shift_Del p.K83Ifs*12 0.61 TCGA-EK-A2RA-01 3 195608929 195608929 A G TNK2 Missense_Mutation p.F357L 0.17 deleterious(0.01) possibly_damaging(0.866) TCGA-EK-A2RA-01 3 2613131 2613131 G C CNTN4 5'UTR 0.12 TCGA-EK-A2RA-01 3 39226759 39226759 C G XIRP1 Missense_Mutation p.G1393A 0.10 tolerated_low_confidence(0.4) benign(0.008) TCGA-EK-A2RA-01 3 42700060 42700060 C G ZBTB47 Silent p.L71L 0.11 TCGA-EK-A2RA-01 3 44776538 44776538 G C ZNF501 Missense_Mutation p.E209Q 0.22 tolerated_low_confidence(1) possibly_damaging(0.518) TCGA-EK-A2RA-01 3 45943781 45943781 C T CCR9 3'UTR 0.09 TCGA-EK-A2RA-01 3 46244879 46244879 C T CCR1 Missense_Mutation p.R309Q 0.12 tolerated(0.14) benign(0.041) TCGA-EK-A2RA-01 3 49200107 49200107 T A CCDC71 3'UTR 0.14 TCGA-EK-A2RA-01 3 49200139 49200139 G A CCDC71 3'UTR 0.14 TCGA-EK-A2RA-01 3 51671320 51671320 C G RAD54L2 Missense_Mutation p.L495V 0.21 deleterious(0) probably_damaging(1) TCGA-EK-A2RA-01 3 57616652 57616652 C A DENND6A Missense_Mutation p.K469N 0.18 deleterious(0) probably_damaging(0.994) TCGA-EK-A2RA-01 3 99648870 99648870 G A FILIP1L Nonsense_Mutation p.R86* 0.08 TCGA-EK-A2RA-01 4 110739145 110739145 A G GAR1 Missense_Mutation p.T90A 0.32 tolerated(0.56) benign(0.237) TCGA-EK-A2RA-01 4 122071296 122071296 C T TNIP3 Missense_Mutation p.E268K 0.20 deleterious(0.02) benign(0.024) TCGA-EK-A2RA-01 4 13606480 13606480 G A BOD1L1 Missense_Mutation p.R682C 0.28 benign(0.091) TCGA-EK-A2RA-01 4 141543434 141543434 C T TBC1D9 Missense_Mutation p.R1239K 0.12 tolerated_low_confidence(1) benign(0.006) TCGA-EK-A2RA-01 4 154626604 154626604 A G TLR2 3'UTR 0.19 TCGA-EK-A2RA-01 4 158254137 158254137 A T GRIA2 Missense_Mutation p.Q350L 0.59 deleterious(0.04) probably_damaging(0.995) TCGA-EK-A2RA-01 4 16590439 16590439 C G LDB2 Missense_Mutation p.R142T 0.25 deleterious(0) probably_damaging(0.983) TCGA-EK-A2RA-01 4 2906520 2906520 C A ADD1 Nonsense_Mutation p.Y397* 0.29 TCGA-EK-A2RA-01 4 3514519 3514519 C T LRPAP1 3'UTR 0.42 TCGA-EK-A2RA-01 4 41749513 41749513 C T PHOX2B Silent p.E94E 0.10 TCGA-EK-A2RA-01 4 419668 419668 G C ABCA11P RNA 0.22 TCGA-EK-A2RA-01 4 4420207 4420207 A C NSG1 3'UTR 0.24 TCGA-EK-A2RA-01 4 72437619 72437619 A T SLC4A4 3'UTR 0.27 TCGA-EK-A2RA-01 4 88904114 88904114 G A SPP1 3'UTR 0.40 TCGA-EK-A2RA-01 4 96761857 96761857 G T PDHA2 Nonsense_Mutation p.E186* 0.15 TCGA-EK-A2RA-01 5 110442995 110442995 G A WDR36 Missense_Mutation p.E451K 0.24 tolerated(0.39) benign(0.028) TCGA-EK-A2RA-01 5 127507426 127507426 C G SLC12A2 Missense_Mutation p.L931V 0.15 tolerated(0.34) benign(0.091) TCGA-EK-A2RA-01 5 134152222 134152222 G A DDX46 Missense_Mutation p.E847K 0.20 tolerated(0.36) benign(0.101) TCGA-EK-A2RA-01 5 138264974 138264974 G C CTNNA1 Missense_Mutation p.D647H 0.10 deleterious(0.01) benign(0.021) TCGA-EK-A2RA-01 5 140011944 140011944 C T CD14 Missense_Mutation p.E209K 0.33 deleterious(0.03) possibly_damaging(0.499) TCGA-EK-A2RA-01 5 140176361 140176361 C T PCDHA2 Silent p.N604N 0.17 TCGA-EK-A2RA-01 5 140182150 140182150 G A PCDHA3 Silent p.S456S 0.32 TCGA-EK-A2RA-01 5 140183041 140183041 G C PCDHA3 Missense_Mutation p.Q753H 0.22 deleterious_low_confidence(0.01) benign(0.061) TCGA-EK-A2RA-01 5 140263052 140263052 C G PCDHA13 Missense_Mutation p.T400S 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.511) TCGA-EK-A2RA-01 5 141309764 141309764 C G KIAA0141 Missense_Mutation p.L227V 0.12 tolerated(0.1) benign(0.04) TCGA-EK-A2RA-01 5 146770837 146770837 G A DPYSL3 3'UTR 0.19 TCGA-EK-A2RA-01 5 149583535 149583535 G A SLC6A7 Silent p.K422K 0.16 TCGA-EK-A2RA-01 5 172396548 172396548 G C RPL26L1 3'UTR 0.11 TCGA-EK-A2RA-01 5 179156795 179156795 C T CANX 3'UTR 0.39 TCGA-EK-A2RA-01 5 179745956 179745956 G A GFPT2 Silent p.S265S 0.30 TCGA-EK-A2RA-01 5 424025 424025 C T AHRR Missense_Mutation p.S218L 0.07 deleterious(0) possibly_damaging(0.903) TCGA-EK-A2RA-01 5 5463228 5463228 G C KIAA0947 Missense_Mutation p.E1261Q 0.14 tolerated(0.09) benign(0.281) TCGA-EK-A2RA-01 5 56218270 56218270 C T MIER3 3'UTR 0.50 TCGA-EK-A2RA-01 5 58267935 58267935 C T PDE4D 3'UTR 0.19 TCGA-EK-A2RA-01 5 73924253 73924253 C A ENC1 3'UTR 0.26 TCGA-EK-A2RA-01 6 107955149 107955149 G A SOBP Silent p.Q367Q 0.34 TCGA-EK-A2RA-01 6 116752140 116752140 T C DSE Missense_Mutation p.W232R 0.35 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RA-01 6 119390228 119390228 C A FAM184A Intron 0.32 TCGA-EK-A2RA-01 6 139165616 139165616 A G ECT2L Silent p.R221R 0.79 TCGA-EK-A2RA-01 6 143091571 143091571 C T HIVEP2 Silent p.L1435L 0.28 TCGA-EK-A2RA-01 6 150290316 150290316 C G ULBP1 Missense_Mutation p.L149V 0.18 deleterious(0) probably_damaging(0.956) TCGA-EK-A2RA-01 6 28121105 28121105 C T ZKSCAN8 Silent p.P349P 0.24 TCGA-EK-A2RA-01 6 31607000 31607000 G A BAG6 Missense_Mutation p.R1103W 0.25 deleterious(0) probably_damaging(0.988) TCGA-EK-A2RA-01 6 34848131 34848131 C A TAF11 Nonsense_Mutation p.E115* 0.39 TCGA-EK-A2RA-01 6 56328484 56328484 C T DST Missense_Mutation p.R4966Q 0.17 probably_damaging(0.999) TCGA-EK-A2RA-01 7 100361686 100361686 C G ZAN Missense_Mutation p.F1378L 0.12 unknown(0) TCGA-EK-A2RA-01 7 100364824 100364824 G A ZAN Missense_Mutation p.V1602I 0.13 unknown(0) TCGA-EK-A2RA-01 7 100676607 100676607 G T MUC17 Missense_Mutation p.S637I 0.26 probably_damaging(0.964) TCGA-EK-A2RA-01 7 104757732 104757732 C G SRPK2 3'UTR 0.18 TCGA-EK-A2RA-01 7 134618729 134618729 G C CALD1 Missense_Mutation p.K403N 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-EK-A2RA-01 7 139810954 139810954 C G KDM7A Missense_Mutation p.D457H 0.37 deleterious(0) probably_damaging(0.981) TCGA-EK-A2RA-01 7 141768492 141768492 G A MGAM Intron 0.42 TCGA-EK-A2RA-01 7 143175196 143175197 - G TAS2R41 Frame_Shift_Ins p.L80Sfs*34 0.13 TCGA-EK-A2RA-01 7 2946025 2946025 C G CARD11 3'UTR 0.27 TCGA-EK-A2RA-01 7 38304980 38304980 G C TRGC1 Missense_Mutation p.Q101E 0.21 tolerated(0.08) benign(0.247) TCGA-EK-A2RA-01 7 94540010 94540010 T C PPP1R9A Silent p.T195T 0.16 TCGA-EK-A2RA-01 8 103870315 103870315 G A AZIN1 5'UTR 0.33 TCGA-EK-A2RA-01 8 122625992 122625992 G C HAS2 3'UTR 0.42 TCGA-EK-A2RA-01 8 139149461 139149461 T C FAM135B Missense_Mutation p.Q1315R 0.33 deleterious(0.01) probably_damaging(0.928) TCGA-EK-A2RA-01 8 21927809 21927809 G A DMTN Missense_Mutation p.D190N 0.22 deleterious(0.02) probably_damaging(0.957) TCGA-EK-A2RA-01 8 30704643 30704643 C T TEX15 Missense_Mutation p.E631K 0.15 tolerated(0.1) benign(0.011) TCGA-EK-A2RA-01 8 30705057 30705057 C G TEX15 Missense_Mutation p.E493Q 0.36 tolerated(0.05) probably_damaging(0.955) TCGA-EK-A2RA-01 8 87076347 87076347 A C PSKH2 Silent p.V233V 0.36 TCGA-EK-A2RA-01 8 88885439 88885439 C T DCAF4L2 Missense_Mutation p.R254H 0.21 deleterious(0.02) benign(0.308) TCGA-EK-A2RA-01 9 116153117 116153117 C T ALAD Missense_Mutation p.D120N 0.25 deleterious(0) probably_damaging(1) TCGA-EK-A2RA-01 9 116357919 116357919 C A RGS3 Missense_Mutation p.F1095L 0.18 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RA-01 9 137300845 137300845 C T RXRA Missense_Mutation p.R164C 0.30 deleterious(0) probably_damaging(1) TCGA-EK-A2RA-01 9 138387442 138387442 G C C9orf116 Missense_Mutation p.S81W 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-EK-A2RA-01 9 140729915 140729915 C T EHMT1 3'UTR 0.28 TCGA-EK-A2RA-01 9 19352601 19352601 C T DENND4C Silent p.F1524F 0.33 TCGA-EK-A2RA-01 9 3275524 3275524 C G RFX3 Missense_Mutation p.Q354H 0.34 deleterious(0) benign(0.035) TCGA-EK-A2RA-01 9 35548064 35548064 C T RUSC2 Missense_Mutation p.R516C 0.25 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RA-01 9 4299597 4299597 G A GLIS3 5'UTR 0.19 TCGA-EK-A2RA-01 9 6012865 6012865 G A RANBP6 Missense_Mutation p.R915W 0.14 deleterious(0) benign(0.142) TCGA-EK-A2RA-01 X 100503170 100503170 C T DRP2 Missense_Mutation p.H449Y 0.11 deleterious(0) possibly_damaging(0.901) TCGA-EK-A2RA-01 X 101818421 101818421 C T NXF4 RNA 0.13 TCGA-EK-A2RA-01 X 101909234 101909234 A G GPRASP1 Silent p.K131K 0.17 TCGA-EK-A2RA-01 X 107310348 107310348 C G VSIG1 Silent p.L168L 0.06 TCGA-EK-A2RA-01 X 111155618 111155618 G C TRPC5 Missense_Mutation p.I267M 0.11 tolerated(0.09) benign(0.058) TCGA-EK-A2RA-01 X 115305006 115305006 T C AGTR2 3'UTR 0.15 TCGA-EK-A2RA-01 X 133561388 133561388 C T PHF6 3'UTR 0.31 TCGA-EK-A2RA-01 X 134232432 134232432 C G LINC00087 RNA 0.25 TCGA-EK-A2RA-01 X 150889972 150889972 C T FATE1 Missense_Mutation p.R114C 0.13 tolerated(0.05) probably_damaging(0.916) TCGA-EK-A2RA-01 X 21675999 21675999 G A KLHL34 5'UTR 0.14 TCGA-EK-A2RA-01 X 23412156 23412157 - T PTCHD1 Frame_Shift_Ins p.L842Ffs*12 0.17 TCGA-EK-A2RA-01 X 32563427 32563427 G C DMD Missense_Mutation p.Q673E 0.24 benign(0.34) TCGA-EK-A2RA-01 X 35937975 35937975 G T CXorf22 Missense_Mutation p.S20I 0.21 deleterious_low_confidence(0.01) benign(0.331) TCGA-EK-A2RA-01 X 48374454 48374454 C T PORCN Missense_Mutation p.R365W 0.17 deleterious(0) probably_damaging(0.996) TCGA-EK-A2RA-01 X 49061591 49061591 G T CACNA1F 3'UTR 0.19 TCGA-EK-A2RA-01 X 49346276 49346276 A C GAGE12H Missense_Mutation p.E35D 0.20 tolerated(0.11) possibly_damaging(0.749) TCGA-EK-A2RA-01 X 54842140 54842140 C T MAGED2 Intron 0.19 TCGA-EK-A2RA-01 X 66943614 66943614 G A AR Silent p.E898E 0.28 TCGA-EK-A2RA-01 X 69774555 69774555 C T TEX11 Missense_Mutation p.E761K 0.14 deleterious(0) benign(0.268) TCGA-EK-A2RA-01 X 70148314 70148314 G A SLC7A3 Silent p.D233D 0.24 TCGA-EK-A2RA-01 X 73042609 73042609 C A XIST RNA 0.14 TCGA-EK-A2RA-01 X 76761674 76761674 G T ATRX 3'UTR 0.50 TCGA-EK-A2RA-01 X 79975055 79975055 G A BRWD3 Silent p.D659D 0.32 TCGA-EK-A2RB-01 10 119043330 119043331 GT - PDZD8 Frame_Shift_Del p.P972Qfs*9 0.17 TCGA-EK-A2RB-01 10 122348880 122348880 C A PPAPDC1A Missense_Mutation p.P228T 0.41 deleterious(0) possibly_damaging(0.644) TCGA-EK-A2RB-01 10 133976858 133976858 G A JAKMIP3 Missense_Mutation p.R787H 0.45 deleterious(0) probably_damaging(0.969) TCGA-EK-A2RB-01 10 72520346 72520346 C A ADAMTS14 Missense_Mutation p.P1140T 0.26 tolerated(0.27) benign(0.006) TCGA-EK-A2RB-01 10 81706238 81706238 G A SFTPD Missense_Mutation p.R60W 0.27 tolerated(0.07) benign(0.003) TCGA-EK-A2RB-01 11 113934839 113934839 G A ZBTB16 Missense_Mutation p.E273K 0.43 tolerated(0.52) benign(0.024) TCGA-EK-A2RB-01 11 3141840 3141840 C T OSBPL5 Silent p.L139L 0.35 TCGA-EK-A2RB-01 11 56113585 56113585 C A OR8K1 Missense_Mutation p.T24K 0.41 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-EK-A2RB-01 11 56113638 56113638 C T OR8K1 Silent p.L42L 0.33 TCGA-EK-A2RB-01 11 563402 563402 C G RASSF7 Missense_Mutation p.L320V 0.24 tolerated(0.16) benign(0.039) TCGA-EK-A2RB-01 11 56409223 56409223 G T OR5AP2 Silent p.V231V 0.23 TCGA-EK-A2RB-01 11 77301505 77301505 G A AQP11 Silent p.K156K 0.37 TCGA-EK-A2RB-01 11 828915 828915 C T EFCAB4A Missense_Mutation p.R77W 0.53 deleterious(0) possibly_damaging(0.663) TCGA-EK-A2RB-01 12 12317428 12317428 G A LRP6 Missense_Mutation p.R611C 0.40 tolerated(0.19) possibly_damaging(0.586) TCGA-EK-A2RB-01 12 32481347 32481347 G C BICD1 Missense_Mutation p.R653T 0.37 deleterious(0) probably_damaging(0.973) TCGA-EK-A2RB-01 12 8982339 8982339 C T A2ML1 Silent p.V142V 0.43 TCGA-EK-A2RB-01 13 52343416 52343416 C T DHRS12 Silent p.A240A 0.53 TCGA-EK-A2RB-01 13 88331214 88331214 T G SLITRK5 3'UTR 0.53 TCGA-EK-A2RB-01 14 55169040 55169040 C T SAMD4A Missense_Mutation p.R153C 0.41 deleterious(0.04) probably_damaging(0.987) TCGA-EK-A2RB-01 14 58605832 58605832 G A C14orf37 Missense_Mutation p.S82L 0.38 deleterious(0.04) benign(0) TCGA-EK-A2RB-01 14 60212576 60212576 C G RTN1 Missense_Mutation p.E289Q 0.34 tolerated(0.24) benign(0.101) TCGA-EK-A2RB-01 14 60426611 60426611 G A LRRC9 Missense_Mutation p.D320N 0.40 tolerated(0.06) benign(0.029) TCGA-EK-A2RB-01 14 75937081 75937081 C T JDP2 3'UTR 0.33 TCGA-EK-A2RB-01 14 89083219 89083219 G T EML5 Missense_Mutation p.L1883I 0.21 deleterious(0.02) possibly_damaging(0.485) TCGA-EK-A2RB-01 14 96129713 96129713 G C TCL6 RNA 0.27 TCGA-EK-A2RB-01 15 43235431 43235431 G A UBR1 3'UTR 0.31 TCGA-EK-A2RB-01 15 74704301 74704301 G A SEMA7A Silent p.F449F 0.38 TCGA-EK-A2RB-01 15 80454635 80454635 G A FAH Missense_Mutation p.G138R 0.50 deleterious(0) probably_damaging(1) TCGA-EK-A2RB-01 16 1838598 1838598 G A NUBP2 Missense_Mutation p.M233I 0.45 tolerated(0.45) benign(0) TCGA-EK-A2RB-01 16 2303220 2303220 C G RNPS1 3'UTR 0.30 TCGA-EK-A2RB-01 16 24231365 24231365 C T PRKCB 3'UTR 0.40 TCGA-EK-A2RB-01 16 29811297 29811297 G A KIF22 Missense_Mutation p.R403Q 0.47 tolerated(0.17) benign(0.007) TCGA-EK-A2RB-01 16 31235905 31235905 C T TRIM72 Silent p.D421D 0.41 TCGA-EK-A2RB-01 16 66424396 66424396 G A CDH5 Missense_Mutation p.R291Q 0.56 tolerated(0.23) probably_damaging(0.962) TCGA-EK-A2RB-01 16 72137934 72137934 C T DHX38 Silent p.L638L 0.50 TCGA-EK-A2RB-01 17 1381435 1381435 G A MYO1C Silent p.F449F 0.21 TCGA-EK-A2RB-01 17 17720301 17720301 G A SREBF1 Missense_Mutation p.R616C 0.45 deleterious(0) probably_damaging(0.993) TCGA-EK-A2RB-01 17 18023448 18023448 G A MYO15A Missense_Mutation p.R445H 0.38 possibly_damaging(0.522) TCGA-EK-A2RB-01 17 1840152 1840152 C T RTN4RL1 Missense_Mutation p.D322N 0.37 tolerated(0.16) benign(0.024) TCGA-EK-A2RB-01 17 45918202 45918202 G A SCRN2 Missense_Mutation p.S3L 0.48 tolerated_low_confidence(0.16) unknown(0) TCGA-EK-A2RB-01 17 46148890 46148890 C T CBX1 Silent p.K155K 0.41 TCGA-EK-A2RB-01 17 5042423 5042423 T C USP6 Intron 0.30 TCGA-EK-A2RB-01 17 62020421 62020421 C T SCN4A Silent p.T1351T 0.37 TCGA-EK-A2RB-01 17 66924155 66924155 G A ABCA8 Missense_Mutation p.S392L 0.29 tolerated(0.22) benign(0.036) TCGA-EK-A2RB-01 17 6939607 6939607 G C SLC16A13 5'UTR 0.42 TCGA-EK-A2RB-01 17 74007747 74007749 CTC - EVPL In_Frame_Del p.E857del 0.31 TCGA-EK-A2RB-01 17 9480072 9480072 C G WDR16 Missense_Mutation p.I20M 0.29 deleterious(0) possibly_damaging(0.893) TCGA-EK-A2RB-01 18 54350029 54350029 G C WDR7 Missense_Mutation p.K155N 0.33 deleterious(0) probably_damaging(0.94) TCGA-EK-A2RB-01 19 12540842 12540842 G A ZNF443 3'UTR 0.39 TCGA-EK-A2RB-01 19 14266197 14266197 C T LPHN1 Missense_Mutation p.V1095I 0.42 tolerated(1) benign(0.004) TCGA-EK-A2RB-01 19 21132636 21132636 C T ZNF85 Missense_Mutation p.S439L 0.36 deleterious(0.01) probably_damaging(0.931) TCGA-EK-A2RB-01 19 22271011 22271011 C G ZNF257 Silent p.V153V 0.39 TCGA-EK-A2RB-01 19 34936007 34936007 C T UBA2 Missense_Mutation p.P251L 0.41 deleterious(0) possibly_damaging(0.814) TCGA-EK-A2RB-01 19 36205495 36205495 G C ZBTB32 5'UTR 0.33 TCGA-EK-A2RB-01 19 42752751 42752751 C G ERF Missense_Mutation p.E505Q 0.31 tolerated_low_confidence(0.79) benign(0.013) TCGA-EK-A2RB-01 19 44662099 44662099 C T ZNF234 Nonsense_Mutation p.R644* 0.45 TCGA-EK-A2RB-01 19 49001792 49001792 G A LMTK3 Missense_Mutation p.P874L 0.36 unknown(0) TCGA-EK-A2RB-01 19 51326956 51326956 C T KLK1 Intron 0.32 TCGA-EK-A2RB-01 19 57910879 57910879 C T ZNF548 Silent p.L420L 0.37 TCGA-EK-A2RB-01 1 103343304 103343304 G C COL11A1 3'UTR 0.24 TCGA-EK-A2RB-01 1 12387745 12387745 G A VPS13D Silent p.A2677A 0.37 TCGA-EK-A2RB-01 1 157737271 157737271 G A FCRL2 Silent p.L304L 0.30 TCGA-EK-A2RB-01 1 159410019 159410019 G T OR10J1 Silent p.L157L 0.33 TCGA-EK-A2RB-01 1 226252066 226252066 A T H3F3A Missense_Mutation p.K5M 0.35 deleterious_low_confidence(0) benign(0.355) TCGA-EK-A2RB-01 1 228468419 228468419 G A OBSCN Missense_Mutation p.D3136N 0.38 benign(0.102) TCGA-EK-A2RB-01 1 231298820 231298820 G A TRIM67 Silent p.A35A 0.48 TCGA-EK-A2RB-01 1 23686500 23686500 C G ZNF436 3'UTR 0.25 TCGA-EK-A2RB-01 1 26449625 26449625 C G PDIK1L 3'UTR 0.43 TCGA-EK-A2RB-01 1 27685987 27685987 G A MAP3K6 Silent p.F782F 0.42 TCGA-EK-A2RB-01 1 44778898 44778898 G A ERI3 Silent p.L203L 0.26 TCGA-EK-A2RB-01 1 53413706 53413706 G C SCP2 Missense_Mutation p.Q51H 0.42 tolerated(0.06) benign(0.015) TCGA-EK-A2RB-01 1 94994925 94994925 T C F3 3'UTR 0.50 TCGA-EK-A2RB-01 1 99422185 99422185 C T LPPR5 Missense_Mutation p.R117H 0.32 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RB-01 20 259813 259813 C T C20orf96 Silent p.A155A 0.50 TCGA-EK-A2RB-01 20 2843296 2843296 G A VPS16 Silent p.Q381Q 0.40 TCGA-EK-A2RB-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.36 TCGA-EK-A2RB-01 20 389369 389369 T C RBCK1 5'UTR 0.19 TCGA-EK-A2RB-01 21 41561046 41561046 G A DSCAM Nonsense_Mutation p.R826* 0.45 TCGA-EK-A2RB-01 21 45953608 45953608 C T TSPEAR Missense_Mutation p.V168I 0.46 tolerated(0.36) benign(0) TCGA-EK-A2RB-01 22 22041235 22041243 TGCGGCTGC - PPIL2 In_Frame_Del p.V282_H285delinsD 0.52 TCGA-EK-A2RB-01 22 31722869 31722869 C T PATZ1 3'UTR 0.35 TCGA-EK-A2RB-01 22 31740386 31740387 - T PATZ1 Frame_Shift_Ins p.H401Qfs*6 0.26 TCGA-EK-A2RB-01 22 32924939 32924939 C T SYN3 Silent p.L384L 0.53 TCGA-EK-A2RB-01 22 38119251 38119251 G A TRIOBP Missense_Mutation p.G230R 0.37 deleterious_low_confidence(0) benign(0.001) TCGA-EK-A2RB-01 22 41752398 41752398 G A ZC3H7B Missense_Mutation p.G812E 0.39 tolerated(0.58) benign(0.098) TCGA-EK-A2RB-01 2 136873513 136873513 C T CXCR4 5'UTR 0.36 TCGA-EK-A2RB-01 2 160031609 160031609 G A TANC1 Missense_Mutation p.S550N 0.31 tolerated(0.18) probably_damaging(0.998) TCGA-EK-A2RB-01 2 176972090 176972090 G A HOXD11 Missense_Mutation p.D3N 0.40 tolerated(0.07) benign(0.046) TCGA-EK-A2RB-01 2 179452396 179452396 C T TTN Missense_Mutation p.D21214N 0.30 TCGA-EK-A2RB-01 2 179912014 179912014 G C CCDC141 Silent p.L74L 0.33 TCGA-EK-A2RB-01 2 180838465 180838465 C T CWC22 Missense_Mutation p.A216T 0.43 deleterious(0) probably_damaging(0.938) TCGA-EK-A2RB-01 2 210557519 210557519 G A MAP2 Missense_Mutation p.D209N 0.39 deleterious_low_confidence(0.02) benign(0.008) TCGA-EK-A2RB-01 2 237402449 237402449 G C IQCA1 Missense_Mutation p.Q140E 0.39 tolerated(0.92) benign(0.003) TCGA-EK-A2RB-01 2 241991561 241991561 G A SNED1 Silent p.R652R 0.47 TCGA-EK-A2RB-01 2 3623422 3623422 G C RPS7 Missense_Mutation p.E31Q 0.06 deleterious(0.04) possibly_damaging(0.49) TCGA-EK-A2RB-01 2 55844417 55844417 G A SMEK2 Missense_Mutation p.S2L 0.43 deleterious(0.03) possibly_damaging(0.788) TCGA-EK-A2RB-01 2 89197274 89197274 T C IGKV5-2 Missense_Mutation p.F107L 0.39 deleterious(0) benign(0.074) TCGA-EK-A2RB-01 3 190106178 190106178 G T CLDN16 Missense_Mutation p.L90F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RB-01 3 35732402 35732402 G C ARPP21 Missense_Mutation p.M197I 0.62 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RB-01 3 52439883 52439883 G A BAP1 Nonsense_Mutation p.Q277* 0.59 TCGA-EK-A2RB-01 4 100821846 100821846 C G DNAJB14 3'UTR 0.40 TCGA-EK-A2RB-01 4 159140497 159140497 C G TMEM144 Nonsense_Mutation p.S123* 0.37 TCGA-EK-A2RB-01 4 162307436 162307436 G A FSTL5 Silent p.S669S 0.41 TCGA-EK-A2RB-01 4 21950366 21950366 G A KCNIP4 5'UTR 0.57 TCGA-EK-A2RB-01 4 79207635 79207635 C T FRAS1 Silent p.H492H 0.45 TCGA-EK-A2RB-01 4 8218729 8218729 C T SH3TC1 Missense_Mutation p.T225M 0.38 tolerated(0.22) benign(0.157) TCGA-EK-A2RB-01 5 140209119 140209119 C T PCDHA6 Silent p.D481D 0.36 TCGA-EK-A2RB-01 5 140554097 140554097 G A PCDHB7 Missense_Mutation p.V561M 0.04 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-EK-A2RB-01 5 140720214 140720214 C T PCDHGA2 Missense_Mutation p.A559V 0.38 tolerated_low_confidence(0.31) benign(0.01) TCGA-EK-A2RB-01 5 150718698 150718698 C A SLC36A2 Missense_Mutation p.V150L 0.31 deleterious(0) probably_damaging(0.917) TCGA-EK-A2RB-01 5 5465100 5465100 G A KIAA0947 Missense_Mutation p.E1885K 0.48 tolerated(0.35) benign(0.156) TCGA-EK-A2RB-01 5 76251689 76251689 G A CRHBP Splice_Site p.X182_splice 0.27 TCGA-EK-A2RB-01 5 82818048 82818048 C G VCAN Missense_Mutation p.S1308C 0.38 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RB-01 6 149997469 149997469 C A LATS1 Missense_Mutation p.G937V 0.72 deleterious(0) probably_damaging(1) TCGA-EK-A2RB-01 6 152651255 152651255 C T SYNE1 Silent p.R4855R 0.66 TCGA-EK-A2RB-01 6 167711437 167711437 C A UNC93A Silent p.T168T 0.71 TCGA-EK-A2RB-01 6 22287704 22287704 C T PRL Missense_Mutation p.R204H 0.19 tolerated(0.14) benign(0.308) TCGA-EK-A2RB-01 6 28227708 28227708 A G NKAPL Missense_Mutation p.K187E 0.23 tolerated(0.11) unknown(0) TCGA-EK-A2RB-01 6 42146128 42146128 C T GUCA1A Silent p.N104N 0.38 TCGA-EK-A2RB-01 6 90398302 90398302 G A MDN1 Missense_Mutation p.A3750V 0.67 benign(0.067) TCGA-EK-A2RB-01 6 99997423 99997423 C G CCNC Missense_Mutation p.D187H 0.54 deleterious(0) probably_damaging(1) TCGA-EK-A2RB-01 6 99997438 99997438 C T CCNC Missense_Mutation p.D182N 0.55 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RB-01 7 100192119 100192119 G A FBXO24 Missense_Mutation p.V341M 0.52 deleterious(0.03) possibly_damaging(0.623) TCGA-EK-A2RB-01 7 101063332 101063332 G A COL26A1 Missense_Mutation p.R78H 0.66 deleterious(0) probably_damaging(1) TCGA-EK-A2RB-01 7 1131504 1131504 G T GPER1 Missense_Mutation p.G47V 0.23 tolerated(0.14) benign(0.005) TCGA-EK-A2RB-01 7 151962213 151962213 T C KMT2C Missense_Mutation p.H365R 0.10 probably_damaging(0.997) TCGA-EK-A2RB-01 7 155101629 155101629 G A INSIG1 3'UTR 0.47 TCGA-EK-A2RB-01 7 5540978 5540978 G T FBXL18 Missense_Mutation p.L308M 0.58 tolerated(0.09) probably_damaging(0.999) TCGA-EK-A2RB-01 7 6094176 6094176 C T EIF2AK1 Splice_Site p.X93_splice 0.24 TCGA-EK-A2RB-01 7 81392026 81392026 C T HGF Missense_Mutation p.C84Y 0.23 deleterious(0) possibly_damaging(0.894) TCGA-EK-A2RB-01 7 99103863 99103863 G A ZKSCAN5 Missense_Mutation p.E66K 0.68 deleterious(0) possibly_damaging(0.559) TCGA-EK-A2RB-01 7 99632038 99632038 C T ZKSCAN1 3'UTR 0.23 TCGA-EK-A2RB-01 8 110980754 110980754 C A KCNV1 Nonsense_Mutation p.G356* 0.36 TCGA-EK-A2RB-01 8 55538851 55538851 T A RP1 Silent p.P803P 0.23 TCGA-EK-A2RB-01 8 88885653 88885653 G A DCAF4L2 Missense_Mutation p.P183S 0.27 tolerated(0.69) benign(0.013) TCGA-EK-A2RB-01 9 100368457 100368457 G C TSTD2 Missense_Mutation p.L308V 0.42 deleterious(0.03) probably_damaging(0.951) TCGA-EK-A2RB-01 9 130649001 130649001 G T ST6GALNAC6 Silent p.V293V 0.35 TCGA-EK-A2RB-01 9 135865272 135865272 G A GFI1B Silent p.K264K 0.35 TCGA-EK-A2RB-01 9 25677836 25677836 C G TUSC1 Missense_Mutation p.E162Q 0.29 tolerated(0.18) possibly_damaging(0.783) TCGA-EK-A2RB-01 X 100351315 100351315 T C TMEM35 3'UTR 0.12 TCGA-EK-A2RB-01 X 100356281 100356281 G A CENPI Silent p.E74E 0.15 TCGA-EK-A2RB-01 X 102885616 102885617 - A TCEAL1 3'UTR 0.28 TCGA-EK-A2RB-01 X 106116848 106116848 G C TBC1D8B Missense_Mutation p.D1006H 0.20 tolerated(0.05) benign(0.12) TCGA-EK-A2RB-01 X 114952998 114952998 A C RP1-241P17.4 3'UTR 0.33 TCGA-EK-A2RB-01 X 117739291 117739291 G A DOCK11 Missense_Mutation p.E885K 0.18 tolerated(0.05) benign(0.05) TCGA-EK-A2RB-01 X 117739292 117739292 A T DOCK11 Missense_Mutation p.E885V 0.19 tolerated(0.06) benign(0.244) TCGA-EK-A2RB-01 X 129649757 129649757 C G RP1-274L7.1 RNA 0.20 TCGA-EK-A2RB-01 X 148585791 148585791 C T IDS Missense_Mutation p.D46N 0.18 deleterious(0) probably_damaging(1) TCGA-EK-A2RB-01 X 152101453 152101453 C T ZNF185 Silent p.S352S 0.05 TCGA-EK-A2RB-01 X 2638398 2638398 C T CD99 Silent p.D65D 0.37 TCGA-EK-A2RB-01 X 32459402 32459402 C A DMD Missense_Mutation p.L1272F 0.25 probably_damaging(0.943) TCGA-EK-A2RB-01 X 38271134 38271134 C G OTC Missense_Mutation p.S296C 0.23 deleterious(0.01) possibly_damaging(0.55) TCGA-EK-A2RB-01 X 48558713 48558713 C A SUV39H1 Missense_Mutation p.Q133K 0.50 tolerated(0.75) benign(0.001) TCGA-EK-A2RB-01 X 49031350 49031350 C T PLP2 3'UTR 0.44 TCGA-EK-A2RB-01 X 49104953 49104953 G A CCDC22 Missense_Mutation p.R433H 0.46 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RB-01 X 49647166 49647166 G A USP27X 3'UTR 0.32 TCGA-EK-A2RB-01 X 55515182 55515182 C T USP51 Missense_Mutation p.R64H 0.40 tolerated_low_confidence(0.25) unknown(0) TCGA-EK-A2RB-01 X 77303940 77303940 G C ATP7A 3'UTR 0.16 TCGA-EK-A2RC-01 10 124402737 124402737 C T DMBT1 Silent p.S2355S 0.19 TCGA-EK-A2RC-01 10 49931577 49931577 G T WDFY4 Nonsense_Mutation p.E186* 0.26 TCGA-EK-A2RC-01 10 51974603 51974603 G A ASAH2 Missense_Mutation p.S347L 0.58 deleterious(0) possibly_damaging(0.672) TCGA-EK-A2RC-01 10 69677167 69677167 G C SIRT1 3'UTR 0.30 TCGA-EK-A2RC-01 10 75673834 75673834 C T PLAU Silent p.L259L 0.31 TCGA-EK-A2RC-01 11 117050146 117050146 C T SIDT2 Missense_Mutation p.T56I 0.27 deleterious(0.01) possibly_damaging(0.851) TCGA-EK-A2RC-01 11 122928971 122928971 C T HSPA8 Missense_Mutation p.D582N 0.18 deleterious_low_confidence(0.02) benign(0.036) TCGA-EK-A2RC-01 11 12348766 12348766 C T MICALCL Missense_Mutation p.S561F 0.28 tolerated(1) benign(0.071) TCGA-EK-A2RC-01 11 12380044 12380044 C G MICALCL 3'UTR 0.40 TCGA-EK-A2RC-01 11 12380410 12380410 C G MICALCL 3'UTR 0.29 TCGA-EK-A2RC-01 11 1756472 1756472 C T IFITM10 3'UTR 0.31 TCGA-EK-A2RC-01 11 20676507 20676507 C G SLC6A5 3'UTR 0.25 TCGA-EK-A2RC-01 11 34097786 34097786 C G CAPRIN1 Missense_Mutation p.Q124E 0.34 tolerated(0.14) probably_damaging(0.995) TCGA-EK-A2RC-01 11 3430130 3430130 G C TSSC2 RNA 0.26 TCGA-EK-A2RC-01 11 36598999 36598999 C G RAG1 3'UTR 0.29 TCGA-EK-A2RC-01 11 46569828 46569828 C G AMBRA1 Missense_Mutation p.D35H 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EK-A2RC-01 11 58386199 58386199 C G ZFP91 3'UTR 0.24 TCGA-EK-A2RC-01 11 61286088 61286088 C T SYT7 3'UTR 0.29 TCGA-EK-A2RC-01 11 62342749 62342749 C A TUT1 Silent p.L852L 0.29 TCGA-EK-A2RC-01 11 62342961 62342961 C G TUT1 Missense_Mutation p.E782Q 0.26 tolerated(0.35) benign(0.007) TCGA-EK-A2RC-01 11 62343193 62343193 C G TUT1 Missense_Mutation p.Q704H 0.32 tolerated(0.22) benign(0.004) TCGA-EK-A2RC-01 11 64064417 64064417 C T KCNK4 Missense_Mutation p.S86L 0.22 deleterious(0) possibly_damaging(0.88) TCGA-EK-A2RC-01 11 64536711 64536711 G A SF1 Missense_Mutation p.R380W 0.34 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RC-01 11 65983654 65983654 C G PACS1 Missense_Mutation p.S242C 0.23 deleterious(0) probably_damaging(0.928) TCGA-EK-A2RC-01 11 6942995 6942995 T G OR2D3 Missense_Mutation p.S255A 0.32 deleterious(0.02) probably_damaging(0.955) TCGA-EK-A2RC-01 12 113624747 113624747 G A RITA1 Missense_Mutation p.V66M 0.32 tolerated(0.09) benign(0.282) TCGA-EK-A2RC-01 12 1192462 1192462 C G ERC1 Missense_Mutation p.Q268E 0.22 tolerated(0.43) benign(0.065) TCGA-EK-A2RC-01 12 124798824 124798824 G T FAM101A Missense_Mutation p.S54I 0.31 deleterious(0) probably_damaging(0.994) TCGA-EK-A2RC-01 12 130184363 130184363 G A TMEM132D Silent p.F320F 0.30 TCGA-EK-A2RC-01 12 132498441 132498441 C T EP400 Silent p.D1302D 0.38 TCGA-EK-A2RC-01 12 49162768 49162768 C T ADCY6 Silent p.V1111V 0.32 TCGA-EK-A2RC-01 12 53185154 53185154 G A KRT3 Silent p.L457L 0.38 TCGA-EK-A2RC-01 12 54406319 54406319 G C HOXC8 3'UTR 0.33 TCGA-EK-A2RC-01 12 56748604 56748604 C T STAT2 Silent p.K197K 0.33 TCGA-EK-A2RC-01 12 56749109 56749109 C T STAT2 Silent p.L166L 0.25 TCGA-EK-A2RC-01 12 6707155 6707155 C G CHD4 Missense_Mutation p.K599N 0.27 deleterious(0.05) possibly_damaging(0.788) TCGA-EK-A2RC-01 12 85432072 85432072 G C LRRIQ1 Missense_Mutation p.D40H 0.33 deleterious(0.01) possibly_damaging(0.789) TCGA-EK-A2RC-01 12 85695176 85695176 G C ALX1 Missense_Mutation p.E302Q 0.21 deleterious(0) probably_damaging(0.99) TCGA-EK-A2RC-01 12 9346779 9346779 G A PZP Missense_Mutation p.S383F 0.34 tolerated(0.69) benign(0.016) TCGA-EK-A2RC-01 13 111088655 111088655 G T COL4A2 Missense_Mutation p.D256Y 0.40 benign(0.164) TCGA-EK-A2RC-01 13 28751999 28751999 C G PAN3 Intron 0.38 TCGA-EK-A2RC-01 13 32885503 32885503 G A ZAR1L Missense_Mutation p.S187L 0.54 tolerated(0.33) benign(0) TCGA-EK-A2RC-01 13 37574722 37574722 C G EXOSC8 5'UTR 0.22 TCGA-EK-A2RC-01 14 100795252 100795252 G A SLC25A47 Missense_Mutation p.E173K 0.31 deleterious(0) probably_damaging(0.996) TCGA-EK-A2RC-01 14 104641549 104641549 C T KIF26A Silent p.N808N 0.34 TCGA-EK-A2RC-01 14 20923756 20923756 G A APEX1 5'UTR 0.18 TCGA-EK-A2RC-01 14 21961414 21961414 G A TOX4 Missense_Mutation p.E547K 0.25 deleterious(0.03) possibly_damaging(0.899) TCGA-EK-A2RC-01 14 21993505 21993505 C T SALL2 Silent p.E119E 0.14 TCGA-EK-A2RC-01 14 50094756 50094756 C G DNAAF2 Missense_Mutation p.D661H 0.18 deleterious(0) probably_damaging(0.94) TCGA-EK-A2RC-01 14 50094828 50094828 C G DNAAF2 Missense_Mutation p.E637Q 0.21 deleterious(0.03) possibly_damaging(0.781) TCGA-EK-A2RC-01 14 60074196 60074196 A T RTN1 Missense_Mutation p.Y594N 0.30 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RC-01 14 64692998 64692998 C G SYNE2 3'UTR 0.21 TCGA-EK-A2RC-01 14 64989628 64989628 G A ZBTB1 Missense_Mutation p.R469Q 0.26 deleterious(0.03) benign(0.113) TCGA-EK-A2RC-01 14 74180160 74180160 C T PNMA1 Silent p.A61A 0.21 TCGA-EK-A2RC-01 14 75747316 75747316 G A FOS Missense_Mutation p.M149I 0.25 tolerated(0.38) benign(0.179) TCGA-EK-A2RC-01 14 91929188 91929188 C G SMEK1 Missense_Mutation p.E609Q 0.22 deleterious(0.03) benign(0.282) TCGA-EK-A2RC-01 14 99976674 99976674 C G CCNK Missense_Mutation p.S433C 0.35 deleterious_low_confidence(0) unknown(0) TCGA-EK-A2RC-01 15 22709084 22709084 G A AC116165.1 5'Flank 0.15 TCGA-EK-A2RC-01 15 25332843 25332843 G A SNORD116-20 RNA 0.18 TCGA-EK-A2RC-01 15 25332850 25332850 G A SNORD116-20 RNA 0.20 TCGA-EK-A2RC-01 15 31334414 31334414 C G TRPM1 Missense_Mutation p.K626N 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-EK-A2RC-01 15 42052697 42052697 C G MGA Silent p.S2456S 0.27 TCGA-EK-A2RC-01 15 48623778 48623778 G C DUT Silent p.A22A 0.19 TCGA-EK-A2RC-01 15 56035141 56035141 G A PRTG 5'UTR 0.20 TCGA-EK-A2RC-01 15 56394437 56394437 C T RFX7 Missense_Mutation p.G178E 0.14 deleterious(0) probably_damaging(1) TCGA-EK-A2RC-01 15 63089415 63089415 C G TLN2 Intron 0.45 TCGA-EK-A2RC-01 15 65917451 65917451 C G SLC24A1 Missense_Mutation p.L345V 0.18 benign(0) TCGA-EK-A2RC-01 15 78293968 78293968 C G TBC1D2B Missense_Mutation p.D897H 0.20 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RC-01 15 85383981 85383981 G C ALPK3 Missense_Mutation p.E693Q 0.20 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-EK-A2RC-01 15 86087109 86087109 C G AKAP13 Missense_Mutation p.I195M 0.20 deleterious(0) possibly_damaging(0.847) TCGA-EK-A2RC-01 15 91433650 91433650 G A FES Missense_Mutation p.G419E 0.15 tolerated(0.18) benign(0.412) TCGA-EK-A2RC-01 16 2159612 2159612 G A PKD1 Silent p.V1852V 0.25 TCGA-EK-A2RC-01 16 337682 337682 G C AXIN1 3'UTR 0.24 TCGA-EK-A2RC-01 16 3794922 3794922 G A CREBBP Nonsense_Mutation p.R1319* 0.22 TCGA-EK-A2RC-01 16 4731718 4731718 C T MGRN1 Silent p.I433I 0.19 TCGA-EK-A2RC-01 16 4960929 4960929 C T PPL Silent p.S28S 0.26 TCGA-EK-A2RC-01 16 56920999 56920999 C T SLC12A3 Silent p.L724L 0.44 TCGA-EK-A2RC-01 16 57416206 57416206 G A CX3CL1 Silent p.G152G 0.33 TCGA-EK-A2RC-01 16 69151183 69151183 C T HAS3 3'UTR 0.23 TCGA-EK-A2RC-01 16 745768 745768 G A FBXL16 Silent p.I263I 0.29 TCGA-EK-A2RC-01 16 75258803 75258803 C T CTRB1 3'UTR 0.28 TCGA-EK-A2RC-01 16 88902139 88902139 C T GALNS Missense_Mutation p.R251Q 0.26 deleterious(0.03) possibly_damaging(0.897) TCGA-EK-A2RC-01 17 10406094 10406094 C T MYH1 Silent p.L1024L 0.32 TCGA-EK-A2RC-01 17 18647791 18647791 G C FBXW10 Missense_Mutation p.Q78H 0.26 deleterious(0) possibly_damaging(0.838) TCGA-EK-A2RC-01 17 30814827 30814827 G A CDK5R1 Silent p.K63K 0.16 TCGA-EK-A2RC-01 17 34233513 34233513 G A AC015849.16 RNA 0.37 TCGA-EK-A2RC-01 17 34236597 34236597 G A AC015849.16 RNA 0.33 TCGA-EK-A2RC-01 17 37381859 37381859 G C STAC2 5'UTR 0.38 TCGA-EK-A2RC-01 17 39623183 39623183 G C KRT32 Missense_Mutation p.S132C 0.21 tolerated(1) benign(0.001) TCGA-EK-A2RC-01 17 40844536 40844536 C T CNTNAP1 Silent p.F850F 0.24 TCGA-EK-A2RC-01 17 43314692 43314692 G C FMNL1 Missense_Mutation p.E256D 0.36 deleterious(0.01) unknown(0) TCGA-EK-A2RC-01 17 43314951 43314951 G C FMNL1 Missense_Mutation p.C280S 0.33 deleterious(0) unknown(0) TCGA-EK-A2RC-01 17 43322670 43322670 G C FMNL1 Missense_Mutation p.E927Q 0.55 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RC-01 17 4442152 4442152 G A SPNS2 3'UTR 0.32 TCGA-EK-A2RC-01 17 53068305 53068305 G C STXBP4 Missense_Mutation p.G56A 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2RC-01 17 5359375 5359375 G A DHX33 Missense_Mutation p.P326L 0.31 deleterious(0.02) probably_damaging(1) TCGA-EK-A2RC-01 17 54926195 54926195 G A DGKE Missense_Mutation p.D343N 0.24 tolerated(0.11) possibly_damaging(0.893) TCGA-EK-A2RC-01 17 57289129 57289129 G A SMG8 Missense_Mutation p.D573N 0.25 tolerated(0.43) possibly_damaging(0.87) TCGA-EK-A2RC-01 17 7155737 7155737 C A ELP5 5'UTR 0.32 TCGA-EK-A2RC-01 17 7401106 7401106 C G POLR2A Silent p.L373L 0.30 TCGA-EK-A2RC-01 17 8000035 8000035 G C ALOXE3 Missense_Mutation p.I814M 0.26 deleterious(0) probably_damaging(1) TCGA-EK-A2RC-01 17 80151681 80151681 G A CCDC57 Missense_Mutation p.H268Y 0.32 tolerated(0.11) benign(0.067) TCGA-EK-A2RC-01 17 8167564 8167564 G T PFAS Missense_Mutation p.R609I 0.39 tolerated(0.17) benign(0) TCGA-EK-A2RC-01 18 12699876 12699876 G C CEP76 Missense_Mutation p.S83C 0.36 deleterious(0.04) possibly_damaging(0.605) TCGA-EK-A2RC-01 18 3879204 3879204 G A DLGAP1 Missense_Mutation p.R289W 0.40 deleterious(0) probably_damaging(0.983) TCGA-EK-A2RC-01 18 50731697 50731697 G C DCC Missense_Mutation p.R562T 0.32 deleterious(0.05) possibly_damaging(0.64) TCGA-EK-A2RC-01 18 77918347 77918347 G A PARD6G Silent p.I146I 0.32 TCGA-EK-A2RC-01 19 10939861 10939861 C T DNM2 Silent p.I736I 0.37 TCGA-EK-A2RC-01 19 1605403 1605403 C T UQCR11 Silent p.V2V 0.29 TCGA-EK-A2RC-01 19 18544419 18544419 C G SSBP4 Missense_Mutation p.P339R 0.29 deleterious_low_confidence(0.01) benign(0.275) TCGA-EK-A2RC-01 19 1925757 1925757 C G SCAMP4 3'UTR 0.22 TCGA-EK-A2RC-01 19 35622312 35622312 C G LGI4 Missense_Mutation p.K202N 0.23 tolerated(0.34) benign(0.039) TCGA-EK-A2RC-01 19 40720877 40720877 G A MAP3K10 Missense_Mutation p.G848D 0.21 deleterious(0.04) possibly_damaging(0.881) TCGA-EK-A2RC-01 19 45716283 45716283 C T EXOC3L2 3'UTR 0.38 TCGA-EK-A2RC-01 19 45716518 45716518 C T EXOC3L2 Missense_Mutation p.E347K 0.30 deleterious(0.04) benign(0.159) TCGA-EK-A2RC-01 19 45977562 45977562 C T FOSB 3'UTR 0.25 TCGA-EK-A2RC-01 19 46094537 46094537 G C GPR4 Silent p.L196L 0.29 TCGA-EK-A2RC-01 19 51532390 51532390 C T KLK12 3'Flank 0.20 TCGA-EK-A2RC-01 19 52537665 52537665 G C ZNF432 Missense_Mutation p.H423D 0.31 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RC-01 19 52538020 52538020 G C ZNF432 Silent p.L304L 0.27 TCGA-EK-A2RC-01 19 54379501 54379501 C G MYADM 3'UTR 0.26 TCGA-EK-A2RC-01 1 109400025 109400025 A T AKNAD1 5'Flank 0.25 TCGA-EK-A2RC-01 1 110255669 110255669 C T GSTM5 Intron 0.26 TCGA-EK-A2RC-01 1 117509918 117509918 C T PTGFRN Silent p.L675L 0.41 TCGA-EK-A2RC-01 1 117638784 117638784 C T TTF2 Nonsense_Mutation p.Q1017* 0.37 TCGA-EK-A2RC-01 1 12785847 12785847 C A AADACL3 Missense_Mutation p.H313N 0.21 deleterious(0.03) possibly_damaging(0.88) TCGA-EK-A2RC-01 1 12979858 12979858 G A PRAMEF7 Silent p.L350L 0.19 TCGA-EK-A2RC-01 1 1551903 1551903 G A MIB2 Missense_Mutation p.E64K 0.34 deleterious_low_confidence(0) benign(0.006) TCGA-EK-A2RC-01 1 155231477 155231477 C G SCAMP3 Missense_Mutation p.D39H 0.34 deleterious(0) probably_damaging(1) TCGA-EK-A2RC-01 1 156821165 156821165 G C INSRR Silent p.L382L 0.39 TCGA-EK-A2RC-01 1 161192154 161192154 C T AL590714.1 Missense_Mutation p.S30F 0.36 benign(0) TCGA-EK-A2RC-01 1 162746018 162746018 G A DDR2 Missense_Mutation p.R714Q 0.36 deleterious(0) probably_damaging(1) TCGA-EK-A2RC-01 1 169761916 169761916 C G METTL18 Missense_Mutation p.Q307H 0.29 deleterious(0.01) possibly_damaging(0.764) TCGA-EK-A2RC-01 1 182359685 182359685 C G GLUL 5'UTR 0.30 TCGA-EK-A2RC-01 1 19504090 19504090 G A UBR4 Silent p.V834V 0.28 TCGA-EK-A2RC-01 1 20107215 20107215 G T TMCO4 Missense_Mutation p.Q13K 0.39 tolerated_low_confidence(0.41) benign(0.022) TCGA-EK-A2RC-01 1 202550187 202550187 G C PPP1R12B 3'UTR 0.34 TCGA-EK-A2RC-01 1 207133999 207133999 C G FCAMR Missense_Mutation p.E408Q 0.33 tolerated(0.23) possibly_damaging(0.5) TCGA-EK-A2RC-01 1 27217198 27217198 G A GPATCH3 3'UTR 0.35 TCGA-EK-A2RC-01 1 31538546 31538546 G A PUM1 5'Flank 0.35 TCGA-EK-A2RC-01 1 36107024 36107024 G A PSMB2 Missense_Mutation p.L4F 0.34 deleterious(0.02) probably_damaging(0.951) TCGA-EK-A2RC-01 1 43785150 43785150 G C TIE1 Missense_Mutation p.W1019C 0.23 deleterious(0) probably_damaging(1) TCGA-EK-A2RC-01 1 57158046 57158046 G A PRKAA2 Missense_Mutation p.A116T 0.27 deleterious(0) possibly_damaging(0.631) TCGA-EK-A2RC-01 1 78030556 78030556 G C ZZZ3 3'UTR 0.32 TCGA-EK-A2RC-01 1 87814326 87814326 G C LMO4 3'UTR 0.22 TCGA-EK-A2RC-01 1 91182448 91182448 G A BARHL2 Missense_Mutation p.T102M 0.25 tolerated_low_confidence(0.27) unknown(0) TCGA-EK-A2RC-01 1 94486804 94486804 C G ABCA4 Missense_Mutation p.E1670D 0.34 tolerated(0.07) benign(0.319) TCGA-EK-A2RC-01 1 94487408 94487408 C G ABCA4 Silent p.V1589V 0.16 TCGA-EK-A2RC-01 20 2604936 2604936 G C TMC2 Missense_Mutation p.D734H 0.29 tolerated(0.07) probably_damaging(0.921) TCGA-EK-A2RC-01 20 32686316 32686316 C G EIF2S2 Missense_Mutation p.E141Q 0.39 tolerated(0.08) benign(0.022) TCGA-EK-A2RC-01 20 32686325 32686325 C A EIF2S2 Nonsense_Mutation p.E138* 0.37 TCGA-EK-A2RC-01 20 35238037 35238037 C G C20orf24 Intron 0.37 TCGA-EK-A2RC-01 20 60702804 60702804 G C LSM14B Intron 0.20 TCGA-EK-A2RC-01 20 60897322 60897322 C G LAMA5 Intron 0.38 TCGA-EK-A2RC-01 21 43802067 43802067 C G TMPRSS3 Intron 0.38 TCGA-EK-A2RC-01 22 20755625 20755625 G A ZNF74 Nonsense_Mutation p.W102* 0.36 TCGA-EK-A2RC-01 22 26707926 26707926 G C SEZ6L Missense_Mutation p.R625T 0.43 deleterious(0) possibly_damaging(0.597) TCGA-EK-A2RC-01 22 26873059 26873059 C G HPS4 Missense_Mutation p.G59A 0.25 deleterious(0) probably_damaging(1) TCGA-EK-A2RC-01 22 31737333 31737333 C G PATZ1 Intron 0.33 TCGA-EK-A2RC-01 22 39908332 39908332 C G MIEF1 Missense_Mutation p.L140V 0.28 deleterious(0.02) benign(0.014) TCGA-EK-A2RC-01 22 44692659 44692659 G C KIAA1644 Silent p.L58L 0.27 TCGA-EK-A2RC-01 22 46654350 46654350 G A PKDREJ Silent p.L1624L 0.35 TCGA-EK-A2RC-01 22 46654366 46654366 G A PKDREJ Silent p.F1618F 0.39 TCGA-EK-A2RC-01 22 47857298 47857298 C G LL22NC03-75H12.2 3'UTR 0.43 TCGA-EK-A2RC-01 2 100289020 100289020 C T AFF3 Missense_Mutation p.D400N 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2RC-01 2 10051016 10051016 C G TAF1B Silent p.L369L 0.38 TCGA-EK-A2RC-01 2 101893156 101893156 C G RNF149 3'UTR 0.55 TCGA-EK-A2RC-01 2 120702805 120702805 G A PTPN4 Missense_Mutation p.E502K 0.23 tolerated(0.41) benign(0.204) TCGA-EK-A2RC-01 2 121106682 121106682 C T INHBB Silent p.L152L 0.29 TCGA-EK-A2RC-01 2 133403010 133403010 G T GPR39 Missense_Mutation p.R398L 0.21 deleterious(0.01) benign(0.056) TCGA-EK-A2RC-01 2 137814668 137814668 C G THSD7B Nonsense_Mutation p.S273* 0.39 TCGA-EK-A2RC-01 2 152419320 152419320 C T NEB Silent p.L6232L 0.33 TCGA-EK-A2RC-01 2 160885430 160885430 G C PLA2R1 Missense_Mutation p.Q296E 0.30 deleterious(0.01) possibly_damaging(0.88) TCGA-EK-A2RC-01 2 170009451 170009451 C T LRP2 Missense_Mutation p.G4107R 0.33 benign(0.12) TCGA-EK-A2RC-01 2 175673663 175673663 C T CHN1 Missense_Mutation p.D358N 0.22 deleterious(0.02) possibly_damaging(0.68) TCGA-EK-A2RC-01 2 179514605 179514605 C A TTN Missense_Mutation p.K13278N 0.34 TCGA-EK-A2RC-01 2 196741270 196741270 T G DNAH7 Missense_Mutation p.M2039L 0.20 tolerated(0.09) benign(0.006) TCGA-EK-A2RC-01 2 219875665 219875665 G A CCDC108 Silent p.T1337T 0.30 TCGA-EK-A2RC-01 2 232326377 232326377 C T NCL Missense_Mutation p.E163K 0.32 unknown(0) TCGA-EK-A2RC-01 2 27354235 27354235 C G PREB 3'UTR 0.14 TCGA-EK-A2RC-01 2 32093552 32093552 C G MEMO1 Missense_Mutation p.E258Q 0.36 tolerated(0.56) benign(0.012) TCGA-EK-A2RC-01 2 37872805 37872805 T G CDC42EP3 3'UTR 0.24 TCGA-EK-A2RC-01 2 71415186 71415186 C T PAIP2B 3'UTR 0.31 TCGA-EK-A2RC-01 2 84913648 84913648 G C DNAH6 Missense_Mutation p.L2368F 0.17 tolerated(0.72) benign(0.058) TCGA-EK-A2RC-01 3 113099823 113099823 G A WDR52 Missense_Mutation p.H659Y 0.13 tolerated(0.24) benign(0.025) TCGA-EK-A2RC-01 3 138191231 138191231 G C ESYT3 Silent p.L589L 0.23 TCGA-EK-A2RC-01 3 14485210 14485210 G T SLC6A6 Missense_Mutation p.G23V 0.45 deleterious(0.03) probably_damaging(1) TCGA-EK-A2RC-01 3 161147340 161147340 C T RP11-3P17.5 RNA 0.31 TCGA-EK-A2RC-01 3 168833226 168833226 C G MECOM Missense_Mutation p.D689H 0.21 tolerated(0.16) probably_damaging(0.924) TCGA-EK-A2RC-01 3 169513463 169513463 C T LRRC34 Intron 0.22 TCGA-EK-A2RC-01 3 169998171 169998171 G C PRKCI Missense_Mutation p.E288Q 0.19 tolerated(0.06) benign(0.174) TCGA-EK-A2RC-01 3 176767838 176767838 C G TBL1XR1 Missense_Mutation p.E217Q 0.21 tolerated(0.15) benign(0.14) TCGA-EK-A2RC-01 3 183823717 183823717 G A HTR3E Missense_Mutation p.M321I 0.22 tolerated(0.48) benign(0.012) TCGA-EK-A2RC-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.19 deleterious_low_confidence(0.02) benign(0.001) TCGA-EK-A2RC-01 3 185236975 185236975 A G LIPH Missense_Mutation p.C281R 0.15 deleterious(0) probably_damaging(1) TCGA-EK-A2RC-01 3 192516904 192516904 C G MB21D2 Missense_Mutation p.Q249H 0.19 deleterious(0.05) probably_damaging(0.99) TCGA-EK-A2RC-01 3 195022848 195022848 G A ACAP2 Missense_Mutation p.S391F 0.18 deleterious(0.02) benign(0.015) TCGA-EK-A2RC-01 3 38533677 38533677 C T ACVR2B 3'UTR 0.47 TCGA-EK-A2RC-01 3 50142541 50142542 AG - RBM5 Frame_Shift_Del p.E221Vfs*10 0.38 TCGA-EK-A2RC-01 3 52437848 52437848 G C BAP1 Nonsense_Mutation p.S438* 0.19 TCGA-EK-A2RC-01 3 57543266 57543266 G A PDE12 Missense_Mutation p.R387Q 0.40 tolerated(0.07) probably_damaging(0.953) TCGA-EK-A2RC-01 3 99514078 99514078 G A COL8A1 Missense_Mutation p.E445K 0.16 tolerated(0.13) unknown(0) TCGA-EK-A2RC-01 4 103831685 103831685 C T SLC9B1 Missense_Mutation p.G333S 0.32 tolerated(0.55) possibly_damaging(0.679) TCGA-EK-A2RC-01 4 169172224 169172224 C G DDX60 Missense_Mutation p.E1247Q 0.30 tolerated(0.63) benign(0.002) TCGA-EK-A2RC-01 4 178897087 178897087 C G LINC01098 Missense_Mutation p.S97C 0.25 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-EK-A2RC-01 4 2906628 2906628 C G ADD1 Silent p.L433L 0.24 TCGA-EK-A2RC-01 4 40045242 40045242 G C RP11-333E13.4 RNA 0.31 TCGA-EK-A2RC-01 4 5624473 5624473 G C EVC2 Silent p.L764L 0.25 TCGA-EK-A2RC-01 4 66201813 66201813 G A EPHA5 Silent p.L897L 0.44 TCGA-EK-A2RC-01 4 68496247 68496247 G C UBA6 Silent p.L755L 0.26 TCGA-EK-A2RC-01 4 8228872 8228872 C T SH3TC1 Missense_Mutation p.S484F 0.26 tolerated(0.7) benign(0.01) TCGA-EK-A2RC-01 4 89772307 89772307 T C FAM13A Missense_Mutation p.I291V 0.20 tolerated(0.5) benign(0) TCGA-EK-A2RC-01 5 115339016 115339016 G C AQPEP Missense_Mutation p.R659T 0.30 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RC-01 5 139889366 139889366 C T ANKHD1 Missense_Mutation p.H1304Y 0.34 benign(0.415) TCGA-EK-A2RC-01 5 140806704 140806704 G A PCDHGB6 Intron 0.22 TCGA-EK-A2RC-01 5 141033523 141033523 G C ARAP3 Silent p.L1543L 0.23 TCGA-EK-A2RC-01 5 167689889 167689889 G A TENM2 3'UTR 0.25 TCGA-EK-A2RC-01 5 176687059 176687059 C A NSD1 Nonsense_Mutation p.S1679* 0.22 TCGA-EK-A2RC-01 5 63257096 63257096 G A HTR1A Missense_Mutation p.R151W 0.27 deleterious(0) probably_damaging(0.995) TCGA-EK-A2RC-01 5 70751441 70751441 C G BDP1 5'Flank 0.34 TCGA-EK-A2RC-01 5 74017486 74017486 C G GFM2 Missense_Mutation p.L778F 0.26 tolerated(0.71) benign(0.007) TCGA-EK-A2RC-01 6 126249951 126249951 G C NCOA7 3'UTR 0.38 TCGA-EK-A2RC-01 6 135751040 135751040 C G AHI1 Missense_Mutation p.L824F 0.46 deleterious(0) probably_damaging(0.981) TCGA-EK-A2RC-01 6 154414441 154414441 G C OPRM1 Intron 0.32 TCGA-EK-A2RC-01 6 158288594 158288594 G C SNX9 Missense_Mutation p.D10H 0.39 deleterious(0) possibly_damaging(0.649) TCGA-EK-A2RC-01 6 166579199 166579199 C T T Missense_Mutation p.E201K 0.34 deleterious(0) possibly_damaging(0.884) TCGA-EK-A2RC-01 6 166778863 166778863 C G MPC1 3'UTR 0.36 TCGA-EK-A2RC-01 6 31748695 31748695 C T VARS Silent p.L890L 0.49 TCGA-EK-A2RC-01 6 31852275 31852275 C T EHMT2 Missense_Mutation p.D889N 0.32 tolerated(0.11) possibly_damaging(0.724) TCGA-EK-A2RC-01 6 34835377 34835377 G A UHRF1BP1 Silent p.L1234L 0.44 TCGA-EK-A2RC-01 7 111451965 111451965 G A DOCK4 Missense_Mutation p.R991C 0.30 tolerated(0.16) possibly_damaging(0.608) TCGA-EK-A2RC-01 7 126544686 126544686 C G GRM8 Missense_Mutation p.G260A 0.23 tolerated(0.39) possibly_damaging(0.887) TCGA-EK-A2RC-01 7 142566338 142566338 C T EPHB6 Silent p.A709A 0.25 TCGA-EK-A2RC-01 7 143175387 143175387 C G TAS2R41 Missense_Mutation p.S141C 0.31 deleterious(0) probably_damaging(0.996) TCGA-EK-A2RC-01 7 151917668 151917668 G A KMT2C Nonsense_Mutation p.Q1218* 0.26 TCGA-EK-A2RC-01 7 4213923 4213923 G A SDK1 Missense_Mutation p.E1624K 0.33 tolerated(0.09) benign(0.099) TCGA-EK-A2RC-01 7 45125617 45125617 G A NACAD Silent p.L54L 0.33 TCGA-EK-A2RC-01 7 5254158 5254158 G C WIPI2 Intron 0.31 TCGA-EK-A2RC-01 7 72855392 72855392 G A BAZ1B 3'UTR 0.36 TCGA-EK-A2RC-01 7 79840295 79840295 G A GNAI1 Missense_Mutation p.V201M 0.19 deleterious(0.01) probably_damaging(0.966) TCGA-EK-A2RC-01 8 11279265 11279265 G A FAM167A 3'UTR 0.33 TCGA-EK-A2RC-01 8 144891727 144891727 G A SCRIB Silent p.Y564Y 0.30 TCGA-EK-A2RC-01 8 144894477 144894477 C G SCRIB Missense_Mutation p.E289Q 0.25 probably_damaging(0.959) TCGA-EK-A2RC-01 8 18080384 18080384 G C NAT1 Missense_Mutation p.Q338H 0.38 tolerated(0.07) benign(0.054) TCGA-EK-A2RC-01 8 21995954 21995954 G C REEP4 3'UTR 0.31 TCGA-EK-A2RC-01 8 39505933 39505933 G C ADAM18 Missense_Mutation p.E373Q 0.40 tolerated(0.06) possibly_damaging(0.88) TCGA-EK-A2RC-01 8 53852812 53852812 C T NPBWR1 Silent p.I115I 0.27 TCGA-EK-A2RC-01 8 87588313 87588313 C T CNGB3 Missense_Mutation p.E717K 0.40 tolerated(0.7) benign(0.355) TCGA-EK-A2RC-01 9 104133675 104133675 C G BAAT Missense_Mutation p.L4F 0.39 deleterious(0.01) possibly_damaging(0.844) TCGA-EK-A2RC-01 9 107457367 107457367 C G OR13D1 Nonsense_Mutation p.S222* 0.41 TCGA-EK-A2RC-01 9 114984888 114984888 C A PTBP3 3'UTR 0.38 TCGA-EK-A2RC-01 9 116811034 116811034 G C ZNF618 Silent p.L391L 0.21 TCGA-EK-A2RC-01 9 130984795 130984795 C A DNM1 Missense_Mutation p.Q350K 0.45 tolerated(0.17) benign(0.026) TCGA-EK-A2RC-01 9 13106947 13106947 C T MPDZ 3'UTR 0.26 TCGA-EK-A2RC-01 9 131346188 131346188 C G SPTAN1 Silent p.T711T 0.20 TCGA-EK-A2RC-01 9 132658209 132658209 C T FNBP1 Missense_Mutation p.G585D 0.31 deleterious(0) probably_damaging(1) TCGA-EK-A2RC-01 9 17502646 17502646 G C CNTLN Missense_Mutation p.R1406T 0.50 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-EK-A2RC-01 9 32542047 32542047 G A TOPORS Nonsense_Mutation p.Q826* 0.27 TCGA-EK-A2RC-01 9 32631420 32631420 C G TAF1L Missense_Mutation p.L1386F 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-EK-A2RC-01 X 101913615 101913615 T A GPRASP1 3'UTR 0.25 TCGA-EK-A2RC-01 X 110543485 110543485 A - DCX 3'UTR 0.33 TCGA-EK-A2RC-01 X 111090481 111090481 G A TRPC5 Missense_Mutation p.L521F 0.32 tolerated(0.99) probably_damaging(0.914) TCGA-EK-A2RC-01 X 148571887 148571887 G C IDS Missense_Mutation p.Q111E 0.26 tolerated(0.06) benign(0.005) TCGA-EK-A2RC-01 X 149100845 149100845 C T CXorf40B Missense_Mutation p.E132K 0.24 tolerated(0.05) benign(0.179) TCGA-EK-A2RC-01 X 29301125 29301125 C T IL1RAPL1 Silent p.I51I 0.22 TCGA-EK-A2RC-01 X 3240795 3240795 G C MXRA5 Nonsense_Mutation p.Y977* 0.40 TCGA-EK-A2RC-01 X 37027642 37027642 G A FAM47C Missense_Mutation p.V387I 0.29 tolerated(0.06) possibly_damaging(0.899) TCGA-EK-A2RC-01 X 38665088 38665088 G A MID1IP1 3'UTR 0.23 TCGA-EK-A2RC-01 X 44402176 44402176 C G FUNDC1 5'UTR 0.24 TCGA-EK-A2RC-01 X 47918789 47918789 C T ZNF630 Missense_Mutation p.E348K 0.21 tolerated(0.54) benign(0.062) TCGA-EK-A2RC-01 X 53276287 53276287 G A IQSEC2 Silent p.L871L 0.32 TCGA-EK-A2RC-01 X 67751980 67751980 G C YIPF6 3'UTR 0.27 TCGA-EK-A2RC-01 X 70341487 70341487 C G MED12 Missense_Mutation p.Q308E 0.22 possibly_damaging(0.522) TCGA-EK-A2RC-01 X 71350409 71350409 G A RGAG4 Missense_Mutation p.P328S 0.32 tolerated(0.18) benign(0.069) TCGA-EK-A2RC-01 X 73524601 73524601 G T ZCCHC13 Nonstop_Mutation p.*167Lext*15 0.29 TCGA-EK-A2RC-01 X 99920345 99920345 C T SRPX2 Missense_Mutation p.S213F 0.22 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RD-01 10 118432565 118432565 G A HSPA12A 3'UTR 0.22 TCGA-EK-A2RD-01 10 13687821 13687821 G C FRMD4A 3'UTR 0.08 TCGA-EK-A2RD-01 10 50151404 50151404 C T WDFY4 Silent p.L2553L 0.32 TCGA-EK-A2RD-01 10 51769259 51769259 G A AGAP6 Silent p.L458L 0.23 TCGA-EK-A2RD-01 10 75095277 75095277 G A TTC18 Silent p.S266S 0.38 TCGA-EK-A2RD-01 11 45245934 45245934 G A PRDM11 Silent p.L303L 0.33 TCGA-EK-A2RD-01 11 47823452 47823452 C T NUP160 Missense_Mutation p.E936K 0.33 tolerated(0.15) benign(0.279) TCGA-EK-A2RD-01 11 48286033 48286033 C T OR4X1 Silent p.V207V 0.27 TCGA-EK-A2RD-01 11 62298739 62298739 C G AHNAK Missense_Mutation p.L1050F 0.09 probably_damaging(0.999) TCGA-EK-A2RD-01 11 6340598 6340598 G C PRKCDBP Missense_Mutation p.S194W 0.27 deleterious(0) probably_damaging(1) TCGA-EK-A2RD-01 11 66297298 66297298 C T BBS1 Missense_Mutation p.R450W 0.25 deleterious(0) probably_damaging(0.961) TCGA-EK-A2RD-01 11 67134998 67134998 G C CLCF1 Missense_Mutation p.S39C 0.41 deleterious(0.01) possibly_damaging(0.52) TCGA-EK-A2RD-01 11 67168188 67168188 G T PPP1CA Silent p.I141I 0.37 TCGA-EK-A2RD-01 11 68478395 68478395 G A MTL5 Silent p.S427S 0.31 TCGA-EK-A2RD-01 11 74208839 74208839 G A LIPT2 5'Flank 0.27 TCGA-EK-A2RD-01 11 76919742 76919742 G A MYO7A Missense_Mutation p.G1982E 0.43 deleterious(0) possibly_damaging(0.71) TCGA-EK-A2RD-01 11 76928352 76928352 C T GDPD4 Silent p.Q511Q 0.37 TCGA-EK-A2RD-01 12 111747986 111747986 G C CUX2 Missense_Mutation p.S467T 0.15 tolerated(0.28) benign(0.002) TCGA-EK-A2RD-01 12 111747997 111747997 G A CUX2 Missense_Mutation p.D471N 0.12 tolerated(0.12) benign(0.411) TCGA-EK-A2RD-01 12 113629176 113629176 G A RITA1 Missense_Mutation p.A122T 0.22 tolerated(0.86) benign(0.003) TCGA-EK-A2RD-01 12 123019305 123019305 G C KNTC1 Missense_Mutation p.R75T 0.10 deleterious(0.04) benign(0.052) TCGA-EK-A2RD-01 12 130648279 130648279 C T FZD10 Silent p.I264I 0.42 TCGA-EK-A2RD-01 12 22401946 22401946 C T ST8SIA1 Missense_Mutation p.R193Q 0.20 tolerated(0.57) benign(0.005) TCGA-EK-A2RD-01 12 5155077 5155077 C G KCNA5 Silent p.V588V 0.17 TCGA-EK-A2RD-01 12 53579210 53579210 G C ZNF740 Missense_Mutation p.D67H 0.50 tolerated(0.08) possibly_damaging(0.861) TCGA-EK-A2RD-01 12 71519010 71519010 G C TSPAN8 3'UTR 0.16 TCGA-EK-A2RD-01 12 85547849 85547849 C T LRRIQ1 Missense_Mutation p.S1566L 0.42 deleterious(0.02) probably_damaging(0.913) TCGA-EK-A2RD-01 12 95688056 95688056 G C VEZT Missense_Mutation p.E511Q 0.11 deleterious(0.05) benign(0.017) TCGA-EK-A2RD-01 13 114438276 114438276 G A GRK1 Missense_Mutation p.M544I 0.14 deleterious(0.03) benign(0.146) TCGA-EK-A2RD-01 13 31037714 31037714 G A HMGB1 Missense_Mutation p.S35L 0.38 deleterious(0.03) possibly_damaging(0.498) TCGA-EK-A2RD-01 13 53624523 53624523 G A OLFM4 Missense_Mutation p.D384N 0.14 deleterious(0) probably_damaging(1) TCGA-EK-A2RD-01 13 86368132 86368132 C G SLITRK6 Missense_Mutation p.E838Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RD-01 13 99481937 99481937 G C DOCK9 Missense_Mutation p.S1547C 0.42 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RD-01 14 102392638 102392638 G A PPP2R5C 3'UTR 0.30 TCGA-EK-A2RD-01 14 104641823 104641823 C G KIF26A Missense_Mutation p.R900G 0.32 tolerated(0.12) benign(0.005) TCGA-EK-A2RD-01 14 105517208 105517208 G A GPR132 3'UTR 0.22 TCGA-EK-A2RD-01 14 22294023 22294023 C G TRAV10 Missense_Mutation p.Q43E 0.24 tolerated(0.26) benign(0.138) TCGA-EK-A2RD-01 14 57115919 57115919 C T TMEM260 3'UTR 0.22 TCGA-EK-A2RD-01 14 70839334 70839334 C T SYNJ2BP 3'UTR 0.47 TCGA-EK-A2RD-01 14 74826214 74826214 C T VRTN 3'UTR 0.50 TCGA-EK-A2RD-01 15 23932065 23932065 C T NDN Silent p.Q100Q 0.24 TCGA-EK-A2RD-01 15 28116342 28116342 C A OCA2 Silent p.L734L 0.15 TCGA-EK-A2RD-01 15 35192944 35192944 G A AQR Nonsense_Mutation p.Q708* 0.13 TCGA-EK-A2RD-01 15 35529980 35529980 G A ANP32AP1 RNA 0.19 TCGA-EK-A2RD-01 15 39874405 39874405 G C THBS1 Missense_Mutation p.D27H 0.27 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-EK-A2RD-01 15 41106171 41106171 G A ZFYVE19 Missense_Mutation p.E414K 0.29 tolerated(0.11) benign(0.066) TCGA-EK-A2RD-01 15 48493744 48493744 G C CTXN2 3'UTR 0.31 TCGA-EK-A2RD-01 15 56735844 56735844 G A MNS1 Nonsense_Mutation p.Q299* 0.42 TCGA-EK-A2RD-01 15 60760317 60760317 C G NARG2 Missense_Mutation p.K117N 0.14 tolerated(0.14) benign(0.038) TCGA-EK-A2RD-01 15 63414886 63414886 G A LACTB Missense_Mutation p.E137K 0.22 tolerated(0.44) benign(0.27) TCGA-EK-A2RD-01 15 63866331 63866331 G A USP3 Missense_Mutation p.R332K 0.54 tolerated(1) benign(0.388) TCGA-EK-A2RD-01 15 67547004 67547004 G A AAGAB 5'UTR 0.27 TCGA-EK-A2RD-01 15 71128664 71128664 C T LARP6 Silent p.V127V 0.11 TCGA-EK-A2RD-01 15 71128729 71128729 C G LARP6 Missense_Mutation p.D106H 0.13 deleterious(0) probably_damaging(1) TCGA-EK-A2RD-01 15 71128822 71128822 C T LARP6 Missense_Mutation p.E75K 0.12 deleterious(0) probably_damaging(0.933) TCGA-EK-A2RD-01 15 81221397 81221397 G A KIAA1199 Missense_Mutation p.E832K 0.29 deleterious(0.04) possibly_damaging(0.507) TCGA-EK-A2RD-01 15 90150020 90150020 C T TICRR Nonsense_Mutation p.Q896* 0.41 TCGA-EK-A2RD-01 15 90152031 90152031 C T TICRR Intron 0.45 TCGA-EK-A2RD-01 15 99671977 99671977 G C SYNM Missense_Mutation p.E1137Q 0.17 deleterious(0) probably_damaging(0.987) TCGA-EK-A2RD-01 15 99672256 99672256 G A SYNM Missense_Mutation p.E1230K 0.23 tolerated(0.5) benign(0.016) TCGA-EK-A2RD-01 16 18812782 18812782 C G ARL6IP1 Missense_Mutation p.E3Q 0.05 deleterious(0.01) benign(0.298) TCGA-EK-A2RD-01 16 21221009 21221009 G A ZP2 Silent p.I91I 0.44 TCGA-EK-A2RD-01 16 2293405 2293405 C G ECI1 Silent p.L159L 0.47 TCGA-EK-A2RD-01 16 28549402 28549402 C G NUPR1 Missense_Mutation p.E81Q 0.13 deleterious(0.03) possibly_damaging(0.742) TCGA-EK-A2RD-01 16 28550171 28550171 C T NUPR1 Missense_Mutation p.E20K 0.17 deleterious(0) possibly_damaging(0.502) TCGA-EK-A2RD-01 16 29755964 29755964 C G C16orf54 Silent p.L103L 0.27 TCGA-EK-A2RD-01 16 3487486 3487486 T A ZNF597 Missense_Mutation p.E71D 0.40 tolerated(0.42) benign(0.416) TCGA-EK-A2RD-01 16 4387454 4387454 G A GLIS2 Missense_Mutation p.E502K 0.18 deleterious(0.01) unknown(0) TCGA-EK-A2RD-01 16 4739029 4739029 G A MGRN1 3'UTR 0.51 TCGA-EK-A2RD-01 16 53504396 53504396 C T RBL2 Nonsense_Mutation p.Q783* 0.30 TCGA-EK-A2RD-01 16 77356301 77356301 C T ADAMTS18 Missense_Mutation p.G699S 0.40 tolerated(0.74) benign(0.003) TCGA-EK-A2RD-01 16 89294118 89294118 G A ZNF778 Silent p.E446E 0.32 TCGA-EK-A2RD-01 17 27940716 27940716 C T ANKRD13B 3'UTR 0.71 TCGA-EK-A2RD-01 17 29557345 29557345 G A NF1 Missense_Mutation p.E1020K 0.33 tolerated(0.09) benign(0.03) TCGA-EK-A2RD-01 17 46607954 46607954 C T HOXB1 Missense_Mutation p.E105K 0.12 deleterious(0.01) possibly_damaging(0.64) TCGA-EK-A2RD-01 17 61895487 61895487 G A DDX42 Missense_Mutation p.S849N 0.29 tolerated_low_confidence(0.68) benign(0.05) TCGA-EK-A2RD-01 17 63533495 63533495 C T AXIN2 Silent p.S553S 0.22 TCGA-EK-A2RD-01 17 73389653 73389653 G A GRB2 Silent p.F19F 0.07 TCGA-EK-A2RD-01 17 76354722 76354722 G A SOCS3 Missense_Mutation p.S152F 0.48 tolerated(0.11) benign(0.003) TCGA-EK-A2RD-01 17 79866749 79866749 C G PCYT2 Intron 0.39 TCGA-EK-A2RD-01 17 79868790 79868790 C G PCYT2 Intron 0.50 TCGA-EK-A2RD-01 17 79868881 79868881 C T PCYT2 Intron 0.56 TCGA-EK-A2RD-01 17 80789532 80789532 C A ZNF750 Nonsense_Mutation p.E267* 0.52 TCGA-EK-A2RD-01 17 9596527 9596527 C A USP43 Silent p.L479L 0.12 TCGA-EK-A2RD-01 18 10485456 10485456 C T APCDD1 Intron 0.24 TCGA-EK-A2RD-01 18 10857131 10857131 C T PIEZO2 Missense_Mutation p.E191K 0.28 tolerated(0.32) benign(0.166) TCGA-EK-A2RD-01 18 18533696 18533696 G A ROCK1 Nonsense_Mutation p.Q1302* 0.28 TCGA-EK-A2RD-01 18 21390425 21390425 G C LAMA3 Missense_Mutation p.D567H 0.36 probably_damaging(0.994) TCGA-EK-A2RD-01 18 31432425 31432425 C T NOL4 3'UTR 0.33 TCGA-EK-A2RD-01 18 54354104 54354104 G C WDR7 Missense_Mutation p.E206Q 0.23 deleterious(0) benign(0.353) TCGA-EK-A2RD-01 18 74659594 74659594 G A ZNF236 Missense_Mutation p.E1632K 0.27 deleterious(0.04) benign(0.271) TCGA-EK-A2RD-01 18 77457866 77457866 G A CTDP1 Missense_Mutation p.E167K 0.33 tolerated(0.19) benign(0.081) TCGA-EK-A2RD-01 18 8831528 8831528 G A SOGA2 Intron 0.15 TCGA-EK-A2RD-01 19 10202009 10202009 G A C19orf66 Silent p.P156P 0.45 TCGA-EK-A2RD-01 19 12060821 12060821 C T ZNF700 Missense_Mutation p.S661F 0.16 deleterious(0.01) possibly_damaging(0.646) TCGA-EK-A2RD-01 19 13930181 13930181 C T ZSWIM4 Silent p.F528F 0.33 TCGA-EK-A2RD-01 19 16344384 16344384 C A AP1M1 Silent p.I388I 0.24 TCGA-EK-A2RD-01 19 18248147 18248147 G A MAST3 Missense_Mutation p.E662K 0.22 deleterious(0) benign(0.434) TCGA-EK-A2RD-01 19 18380286 18380286 C T KIAA1683 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) benign(0.107) TCGA-EK-A2RD-01 19 22846669 22846669 G A ZNF492 Silent p.V66V 0.30 TCGA-EK-A2RD-01 19 34991087 34991087 G A WTIP Silent p.A402A 0.30 TCGA-EK-A2RD-01 19 36213977 36213977 G A KMT2B Missense_Mutation p.E935K 0.07 benign(0.084) TCGA-EK-A2RD-01 19 3924621 3924621 G A ATCAY 3'UTR 0.43 TCGA-EK-A2RD-01 19 39669129 39669129 G A PAK4 Silent p.T562T 0.39 TCGA-EK-A2RD-01 19 39871358 39871358 C T SAMD4B Missense_Mutation p.S594L 0.28 deleterious(0.02) benign(0.047) TCGA-EK-A2RD-01 19 39871374 39871374 C G SAMD4B Silent p.V599V 0.24 TCGA-EK-A2RD-01 19 4048173 4048173 G C ZBTB7A Silent p.G444G 0.06 TCGA-EK-A2RD-01 19 50339648 50339648 C T MED25 Missense_Mutation p.R711W 0.34 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-EK-A2RD-01 19 50961965 50961965 C T MYBPC2 Silent p.S820S 0.24 TCGA-EK-A2RD-01 19 52364164 52364164 G A ZNF577 3'UTR 0.29 TCGA-EK-A2RD-01 19 52942558 52942558 C T ZNF534 Silent p.F628F 0.23 TCGA-EK-A2RD-01 19 53209325 53209325 G A ZNF611 Missense_Mutation p.S328L 0.33 deleterious(0.01) probably_damaging(0.989) TCGA-EK-A2RD-01 19 54803724 54803724 C T LILRA3 Missense_Mutation p.E34K 0.22 deleterious(0.02) possibly_damaging(0.801) TCGA-EK-A2RD-01 19 56701089 56701089 G C ZSCAN5B 3'UTR 0.31 TCGA-EK-A2RD-01 19 6670122 6670122 C T TNFSF14 5'UTR 0.30 TCGA-EK-A2RD-01 19 8321838 8321838 C G CERS4 Missense_Mutation p.F206L 0.28 tolerated(0.06) benign(0.364) TCGA-EK-A2RD-01 1 104160017 104160017 G A AMY2A 5'UTR 0.31 TCGA-EK-A2RD-01 1 118486093 118486093 T C WDR3 Missense_Mutation p.L391S 0.36 tolerated(0.35) benign(0.001) TCGA-EK-A2RD-01 1 1333624 1333624 C G CCNL2 Silent p.L154L 0.30 TCGA-EK-A2RD-01 1 160582348 160582348 G C SLAMF1 Missense_Mutation p.S296C 0.19 deleterious(0.01) benign(0.379) TCGA-EK-A2RD-01 1 161680547 161680547 C T FCRLA Intron 0.11 TCGA-EK-A2RD-01 1 163042594 163042594 G C RGS4 Splice_Site p.X147_splice 0.30 TCGA-EK-A2RD-01 1 172425552 172425552 C G C1orf105 Intron 0.24 TCGA-EK-A2RD-01 1 178819270 178819270 C T ANGPTL1 3'UTR 0.26 TCGA-EK-A2RD-01 1 184690449 184690449 C G EDEM3 Missense_Mutation p.D309H 0.18 deleterious(0.02) possibly_damaging(0.665) TCGA-EK-A2RD-01 1 200880636 200880636 C T C1orf106 Missense_Mutation p.R339C 0.37 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RD-01 1 203148611 203148611 G A CHI3L1 Missense_Mutation p.L372F 0.11 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RD-01 1 203696628 203696628 G C ATP2B4 Missense_Mutation p.D1080H 0.30 tolerated(0.05) probably_damaging(1) TCGA-EK-A2RD-01 1 204228723 204228723 C G PLEKHA6 Missense_Mutation p.E224Q 0.15 tolerated(0.06) possibly_damaging(0.709) TCGA-EK-A2RD-01 1 205767910 205767910 C T SLC41A1 Missense_Mutation p.R244H 0.42 deleterious(0.02) possibly_damaging(0.708) TCGA-EK-A2RD-01 1 228482501 228482501 G C OBSCN Missense_Mutation p.E4235Q 0.09 possibly_damaging(0.857) TCGA-EK-A2RD-01 1 229462517 229462517 G A CCSAP Missense_Mutation p.H202Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RD-01 1 229730226 229730226 T C TAF5L Missense_Mutation p.M530V 0.18 tolerated(0.11) benign(0.046) TCGA-EK-A2RD-01 1 247016504 247016504 C T AHCTF1 Silent p.L1493L 0.19 TCGA-EK-A2RD-01 1 27677685 27677685 G C SYTL1 Intron 0.41 TCGA-EK-A2RD-01 1 32842233 32842233 C T BSDC1 Silent p.E279E 0.19 TCGA-EK-A2RD-01 1 39797784 39797784 C T MACF1 Intron 0.34 TCGA-EK-A2RD-01 1 44063630 44063630 G A PTPRF Silent p.E675E 0.31 TCGA-EK-A2RD-01 1 45163829 45163829 G A C1orf228 Missense_Mutation p.E124K 0.08 deleterious(0.01) probably_damaging(0.956) TCGA-EK-A2RD-01 1 52854276 52854276 C T ORC1 Silent p.E407E 0.28 TCGA-EK-A2RD-01 1 59248525 59248525 G A JUN Missense_Mutation p.S73L 0.30 deleterious(0) probably_damaging(0.995) TCGA-EK-A2RD-01 20 2821390 2821390 C T VPS16 5'UTR 0.56 TCGA-EK-A2RD-01 20 30922717 30922717 G T KIF3B 3'UTR 0.35 TCGA-EK-A2RD-01 20 33432535 33432535 C T GGT7 3'UTR 0.42 TCGA-EK-A2RD-01 20 33448099 33448099 C T GGT7 Missense_Mutation p.G234E 0.38 deleterious(0) probably_damaging(0.97) TCGA-EK-A2RD-01 20 39808989 39808989 G A ZHX3 3'UTR 0.50 TCGA-EK-A2RD-01 20 42223455 42223455 G C IFT52 Missense_Mutation p.Q39H 0.16 tolerated(0.19) benign(0.216) TCGA-EK-A2RD-01 20 56285566 56285566 C G PMEPA1 5'Flank 0.29 TCGA-EK-A2RD-01 21 42080577 42080577 G A DSCAM Missense_Mutation p.T55I 0.18 tolerated(0.35) benign(0.06) TCGA-EK-A2RD-01 22 21174054 21174054 C G PI4KA Missense_Mutation p.E222Q 0.39 tolerated(0.23) benign(0.192) TCGA-EK-A2RD-01 22 29957498 29957498 G A NIPSNAP1 Silent p.L192L 0.49 TCGA-EK-A2RD-01 22 29957564 29957564 G A NIPSNAP1 Silent p.F170F 0.38 TCGA-EK-A2RD-01 22 29957821 29957821 G C NIPSNAP1 Missense_Mutation p.P133R 0.35 deleterious(0.05) benign(0.374) TCGA-EK-A2RD-01 22 37964430 37964430 C G CDC42EP1 Nonsense_Mutation p.S260* 0.14 TCGA-EK-A2RD-01 22 38611413 38611413 C T MAFF 3'UTR 0.37 TCGA-EK-A2RD-01 22 50966024 50966024 G A TYMP Silent p.L213L 0.26 TCGA-EK-A2RD-01 2 103040318 103040318 G C IL18RAP Missense_Mutation p.E40Q 0.31 deleterious(0) possibly_damaging(0.863) TCGA-EK-A2RD-01 2 109367717 109367717 C T RANBP2 Intron 0.19 TCGA-EK-A2RD-01 2 152830219 152830219 G T CACNB4 Intron 0.25 TCGA-EK-A2RD-01 2 159537270 159537270 G T PKP4 3'UTR 0.32 TCGA-EK-A2RD-01 2 162848986 162848986 G T DPP4 3'UTR 0.29 TCGA-EK-A2RD-01 2 172569303 172569303 C T DYNC1I2 Missense_Mutation p.S121L 0.31 deleterious(0.03) possibly_damaging(0.703) TCGA-EK-A2RD-01 2 172569311 172569311 C T DYNC1I2 Nonsense_Mutation p.Q124* 0.28 TCGA-EK-A2RD-01 2 179445312 179445312 G A TTN Missense_Mutation p.A22265V 0.23 TCGA-EK-A2RD-01 2 179584091 179584091 G C TTN Missense_Mutation p.S8009C 0.29 TCGA-EK-A2RD-01 2 190682823 190682823 G A PMS1 Missense_Mutation p.D167N 0.25 deleterious(0) possibly_damaging(0.694) TCGA-EK-A2RD-01 2 191366609 191366609 T C MFSD6 3'UTR 0.19 TCGA-EK-A2RD-01 2 20450718 20450718 C G PUM2 3'UTR 0.36 TCGA-EK-A2RD-01 2 20453700 20453700 C G PUM2 Missense_Mutation p.Q982H 0.31 tolerated(0.54) benign(0.006) TCGA-EK-A2RD-01 2 209218783 209218783 C G PIKFYVE Missense_Mutation p.I2002M 0.40 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RD-01 2 231134292 231134292 C T SP140 Missense_Mutation p.S429L 0.23 tolerated(0.12) benign(0.039) TCGA-EK-A2RD-01 2 27590059 27590059 C G EIF2B4 Missense_Mutation p.E319Q 0.29 tolerated(0.39) benign(0.003) TCGA-EK-A2RD-01 2 3391549 3391549 C T TRAPPC12 Missense_Mutation p.S52L 0.48 deleterious_low_confidence(0.01) benign(0.217) TCGA-EK-A2RD-01 2 37082431 37082431 G A STRN Silent p.F634F 0.25 TCGA-EK-A2RD-01 2 44428556 44428556 C T PPM1B Missense_Mutation p.T73I 0.29 tolerated(0.08) benign(0.077) TCGA-EK-A2RD-01 2 54587431 54587431 C G C2orf73 Nonsense_Mutation p.S199* 0.31 TCGA-EK-A2RD-01 2 63667814 63667814 G A WDPCP Intron 0.33 TCGA-EK-A2RD-01 2 73454024 73454024 G A SMYD5 3'UTR 0.26 TCGA-EK-A2RD-01 2 74699582 74699582 C A MRPL53 Silent p.T36T 0.27 TCGA-EK-A2RD-01 2 87016475 87016475 G A CD8A Missense_Mutation p.S199L 0.35 deleterious(0.03) benign(0.267) TCGA-EK-A2RD-01 2 99260398 99260398 A G MGAT4A Silent p.P336P 0.48 TCGA-EK-A2RD-01 3 10322397 10322397 C T TATDN2 3'UTR 0.26 TCGA-EK-A2RD-01 3 112260686 112260686 C T ATG3 Missense_Mutation p.E147K 0.24 tolerated(0.21) benign(0.03) TCGA-EK-A2RD-01 3 122432403 122432403 C T PARP14 Missense_Mutation p.S1251L 0.24 deleterious(0.03) benign(0.216) TCGA-EK-A2RD-01 3 132432038 132432038 G A NPHP3 Silent p.L350L 0.10 TCGA-EK-A2RD-01 3 136052963 136052963 C G PCCB 3'Flank 0.06 TCGA-EK-A2RD-01 3 138738973 138738973 C T PRR23B Silent p.G177G 0.11 TCGA-EK-A2RD-01 3 147106138 147106138 C T ZIC4 3'UTR 0.20 TCGA-EK-A2RD-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.27 deleterious(0.04) probably_damaging(0.96) TCGA-EK-A2RD-01 3 180688075 180688075 C T FXR1 Missense_Mutation p.T511I 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EK-A2RD-01 3 182988794 182988794 G A B3GNT5 3'UTR 0.25 TCGA-EK-A2RD-01 3 185363265 185363265 C T IGF2BP2 3'UTR 0.25 TCGA-EK-A2RD-01 3 186940918 186940918 C T MASP1 Missense_Mutation p.M602I 0.19 tolerated(0.32) possibly_damaging(0.887) TCGA-EK-A2RD-01 3 187086175 187086175 C T RTP4 5'UTR 0.21 TCGA-EK-A2RD-01 3 189038526 189038526 G C TPRG1 Missense_Mutation p.E249Q 0.45 tolerated(0.05) benign(0.051) TCGA-EK-A2RD-01 3 190374448 190374448 C T IL1RAP 3'UTR 0.16 TCGA-EK-A2RD-01 3 195398061 195398061 C T SDHAP2 RNA 0.10 TCGA-EK-A2RD-01 3 195509260 195509260 G A MUC4 Missense_Mutation p.S3064L 0.30 unknown(0) TCGA-EK-A2RD-01 3 195511394 195511394 G C MUC4 Missense_Mutation p.L2353V 0.09 unknown(0) TCGA-EK-A2RD-01 3 195512236 195512236 G A MUC4 Missense_Mutation p.S2072L 0.17 unknown(0) TCGA-EK-A2RD-01 3 195512642 195512642 G C MUC4 Missense_Mutation p.L1937V 0.07 unknown(0) TCGA-EK-A2RD-01 3 195513359 195513359 G A MUC4 Missense_Mutation p.P1698S 0.20 possibly_damaging(0.782) TCGA-EK-A2RD-01 3 36875105 36875105 G A TRANK1 Missense_Mutation p.S1946L 0.20 tolerated(0.08) benign(0.018) TCGA-EK-A2RD-01 3 48357871 48357871 C G SPINK8 Intron 0.19 TCGA-EK-A2RD-01 3 58415943 58415943 C G PDHB Missense_Mutation p.L204F 0.12 deleterious(0) possibly_damaging(0.71) TCGA-EK-A2RD-01 4 106630022 106630022 C T GSTCD 5'UTR 0.39 TCGA-EK-A2RD-01 4 111398096 111398096 G A ENPEP Missense_Mutation p.E176K 0.27 tolerated(0.24) benign(0.082) TCGA-EK-A2RD-01 4 113437267 113437267 C G NEUROG2 5'UTR 0.25 TCGA-EK-A2RD-01 4 155505486 155505486 C G FGA Missense_Mutation p.E797D 0.36 tolerated(0.05) benign(0.007) TCGA-EK-A2RD-01 4 156136145 156136145 G A NPY2R Missense_Mutation p.E352K 0.24 tolerated(0.08) benign(0.086) TCGA-EK-A2RD-01 4 170510647 170510647 C T NEK1 Missense_Mutation p.D139N 0.17 tolerated(0.27) benign(0.105) TCGA-EK-A2RD-01 4 184367300 184367300 G C CDKN2AIP Missense_Mutation p.E155Q 0.28 tolerated(0.47) unknown(0) TCGA-EK-A2RD-01 4 70465090 70465090 C G UGT2A1 Missense_Mutation p.E456D 0.28 deleterious(0.04) benign(0.401) TCGA-EK-A2RD-01 4 73147102 73147102 G A ADAMTS3 3'UTR 0.29 TCGA-EK-A2RD-01 4 89629466 89629468 GAA - HERC3 3'UTR 0.22 TCGA-EK-A2RD-01 4 96073848 96073848 C G BMPR1B Missense_Mutation p.S466C 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-EK-A2RD-01 5 132203226 132203226 C T UQCRQ Silent p.F67F 0.26 TCGA-EK-A2RD-01 5 137235254 137235254 C G PKD2L2 Missense_Mutation p.L192V 0.32 tolerated(0.75) benign(0.002) TCGA-EK-A2RD-01 5 139892455 139892455 C G ANKHD1 Missense_Mutation p.Q1383E 0.36 benign(0.149) TCGA-EK-A2RD-01 5 140167975 140167975 G C PCDHA1 Silent p.L700L 0.25 TCGA-EK-A2RD-01 5 140589898 140589898 C T PCDHB12 Silent p.I473I 0.30 TCGA-EK-A2RD-01 5 140720582 140720582 G A PCDHGA2 Missense_Mutation p.A682T 0.29 tolerated_low_confidence(0.32) benign(0.006) TCGA-EK-A2RD-01 5 141334932 141334932 G C PCDH12 Missense_Mutation p.Q829E 0.31 tolerated(0.1) possibly_damaging(0.556) TCGA-EK-A2RD-01 5 161128681 161128681 C T GABRA6 Nonsense_Mutation p.R422* 0.38 TCGA-EK-A2RD-01 5 176868293 176868293 C T GRK6 Intron 0.48 TCGA-EK-A2RD-01 5 38957799 38957799 C T RICTOR Silent p.L818L 0.17 TCGA-EK-A2RD-01 5 421431 421431 C T AHRR Intron 0.12 TCGA-EK-A2RD-01 5 72419680 72419680 C T TMEM171 Silent p.F160F 0.13 TCGA-EK-A2RD-01 5 79031279 79031279 G A CMYA5 Missense_Mutation p.E2231K 0.28 benign(0.004) TCGA-EK-A2RD-01 5 87521625 87521625 G A TMEM161B Missense_Mutation p.H84Y 0.12 deleterious(0) benign(0.002) TCGA-EK-A2RD-01 5 94987945 94987945 C G RFESD 5'UTR 0.08 TCGA-EK-A2RD-01 6 151687696 151687696 C T ZBTB2 Missense_Mutation p.E169K 0.33 tolerated(0.61) benign(0.023) TCGA-EK-A2RD-01 6 152443192 152443192 C T SYNE1 3'UTR 0.23 TCGA-EK-A2RD-01 6 159190392 159190392 C T EZR Missense_Mutation p.R437H 0.29 deleterious(0.04) benign(0.022) TCGA-EK-A2RD-01 6 167789501 167789501 G A TCP10 Missense_Mutation p.S214F 0.26 deleterious(0) possibly_damaging(0.773) TCGA-EK-A2RD-01 6 31729660 31729660 G A MSH5 Silent p.A750A 0.29 TCGA-EK-A2RD-01 6 32065757 32065757 G A TNXB Silent p.F73F 0.22 TCGA-EK-A2RD-01 6 46851983 46851983 G C GPR116 Missense_Mutation p.I118M 0.36 tolerated(0.09) benign(0.017) TCGA-EK-A2RD-01 6 47277582 47277582 G A TNFRSF21 5'UTR 0.35 TCGA-EK-A2RD-01 6 47682829 47682829 G A GPR115 Silent p.L616L 0.08 TCGA-EK-A2RD-01 6 80625076 80625076 T A ELOVL4 3'UTR 0.28 TCGA-EK-A2RD-01 6 80626468 80626468 G A ELOVL4 Missense_Mutation p.R268W 0.25 deleterious(0) possibly_damaging(0.901) TCGA-EK-A2RD-01 7 100088718 100088718 G A NYAP1 Silent p.Q756Q 0.15 TCGA-EK-A2RD-01 7 150071077 150071077 C T REPIN1 3'Flank 0.34 TCGA-EK-A2RD-01 7 151873963 151873963 G A KMT2C Missense_Mutation p.H2859Y 0.39 benign(0.001) TCGA-EK-A2RD-01 7 21639599 21639599 G A DNAH11 Silent p.E954E 0.30 TCGA-EK-A2RD-01 7 29923612 29923612 C T WIPF3 Missense_Mutation p.R168C 0.33 tolerated_low_confidence(0.06) possibly_damaging(0.633) TCGA-EK-A2RD-01 7 41730110 41730110 A G INHBA Missense_Mutation p.I140T 0.26 deleterious(0) possibly_damaging(0.874) TCGA-EK-A2RD-01 7 64646871 64646871 C T INTS4L1 RNA 0.29 TCGA-EK-A2RD-01 7 86781764 86781764 C G DMTF1 5'Flank 0.14 TCGA-EK-A2RD-01 7 91936869 91936869 G C ANKIB1 Missense_Mutation p.D129H 0.26 deleterious(0.03) probably_damaging(0.957) TCGA-EK-A2RD-01 7 98497090 98497090 G A TRRAP Missense_Mutation p.E227K 0.38 benign(0.292) TCGA-EK-A2RD-01 7 99754949 99754949 C T C7orf43 Intron 0.08 TCGA-EK-A2RD-01 7 99767912 99767912 G A GPC2 Missense_Mutation p.H561Y 0.24 deleterious(0.02) possibly_damaging(0.833) TCGA-EK-A2RD-01 8 114111003 114111003 G A CSMD3 Missense_Mutation p.S300F 0.35 deleterious(0.02) possibly_damaging(0.786) TCGA-EK-A2RD-01 8 11851600 11851600 C G DEFB134 Missense_Mutation p.K30N 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.788) TCGA-EK-A2RD-01 8 11851611 11851611 C T DEFB134 Missense_Mutation p.E27K 0.21 tolerated_low_confidence(0.12) possibly_damaging(0.636) TCGA-EK-A2RD-01 8 136659337 136659337 C T KHDRBS3 3'UTR 0.23 TCGA-EK-A2RD-01 8 142176354 142176354 C T DENND3 Missense_Mutation p.S460L 0.28 deleterious(0.05) benign(0.158) TCGA-EK-A2RD-01 8 143603463 143603463 C T BAI1 Silent p.L1054L 0.07 TCGA-EK-A2RD-01 8 144994213 144994213 G C PLEC Missense_Mutation p.S3396C 0.30 probably_damaging(0.993) TCGA-EK-A2RD-01 8 23104186 23104186 G A CHMP7 5'UTR 0.27 TCGA-EK-A2RD-01 8 23153596 23153596 C T R3HCC1 Missense_Mutation p.P250S 0.39 tolerated(0.87) benign(0.1) TCGA-EK-A2RD-01 8 25209321 25209321 G A DOCK5 Missense_Mutation p.M943I 0.22 deleterious(0.04) benign(0.206) TCGA-EK-A2RD-01 8 28186791 28186791 C T PNOC Silent p.F39F 0.32 TCGA-EK-A2RD-01 8 53126766 53126766 C G ST18 Missense_Mutation p.E18Q 0.22 tolerated(0.22) benign(0.025) TCGA-EK-A2RD-01 8 75276709 75276709 C T GDAP1 3'UTR 0.30 TCGA-EK-A2RD-01 8 88885044 88885044 G A DCAF4L2 Missense_Mutation p.R386W 0.29 deleterious(0.01) possibly_damaging(0.836) TCGA-EK-A2RD-01 9 111903843 111903843 G A FRRS1L Silent p.V214V 0.38 TCGA-EK-A2RD-01 9 115248878 115248878 C T C9orf147 Intron 0.38 TCGA-EK-A2RD-01 9 115421911 115421911 G A KIAA1958 Silent p.T571T 0.30 TCGA-EK-A2RD-01 9 21967563 21967563 C T C9orf53 3'UTR 0.29 TCGA-EK-A2RD-01 9 35749263 35749263 G A RGP1 5'Flank 0.40 TCGA-EK-A2RD-01 9 35749382 35749382 G A RGP1 5'UTR 0.32 TCGA-EK-A2RD-01 9 74481329 74481329 C G ABHD17B Intron 0.10 TCGA-EK-A2RD-01 9 79931247 79931247 G A VPS13A Missense_Mutation p.M1596I 0.29 tolerated(0.1) benign(0.001) TCGA-EK-A2RD-01 9 85863159 85863159 C T FRMD3 Missense_Mutation p.E490K 0.20 tolerated(0.54) possibly_damaging(0.596) TCGA-EK-A2RD-01 9 90500620 90500620 C G SPATA31E1 Missense_Mutation p.F406L 0.43 tolerated(0.19) possibly_damaging(0.645) TCGA-EK-A2RD-01 9 95480097 95480097 C T BICD2 Missense_Mutation p.R747H 0.12 deleterious(0) probably_damaging(1) TCGA-EK-A2RD-01 X 100334062 100334062 G C TMEM35 Missense_Mutation p.G24A 0.19 deleterious(0) possibly_damaging(0.759) TCGA-EK-A2RD-01 X 11204449 11204449 C T ARHGAP6 Missense_Mutation p.E394K 0.21 tolerated(0.37) benign(0.04) TCGA-EK-A2RD-01 X 117676770 117676770 G A DOCK11 Missense_Mutation p.R62Q 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-EK-A2RD-01 X 117928394 117928394 G A IL13RA1 3'UTR 0.26 TCGA-EK-A2RD-01 X 119243047 119243047 G A RHOXF1 3'UTR 0.25 TCGA-EK-A2RD-01 X 119393443 119393443 G C TMEM255A 3'UTR 0.36 TCGA-EK-A2RD-01 X 128779516 128779516 C T APLN 3'UTR 0.44 TCGA-EK-A2RD-01 X 14863135 14863135 G A FANCB Silent p.F590F 0.18 TCGA-EK-A2RD-01 X 153136342 153136342 G A L1CAM Silent p.L199L 0.16 TCGA-EK-A2RD-01 X 15552383 15552383 G C BMX Missense_Mutation p.E356D 0.31 tolerated(0.25) possibly_damaging(0.472) TCGA-EK-A2RD-01 X 1761847 1761847 C T ASMT Silent p.F354F 0.07 TCGA-EK-A2RD-01 X 24094872 24094872 G A EIF2S3 Silent p.V463V 0.37 TCGA-EK-A2RD-01 X 31747811 31747811 C T DMD Missense_Mutation p.A2533T 0.29 possibly_damaging(0.695) TCGA-EK-A2RD-01 X 44938390 44938390 G A KDM6A Splice_Site p.X980_splice 0.26 TCGA-EK-A2RD-01 X 48460336 48460336 C T WDR13 Silent p.L332L 0.17 TCGA-EK-A2RD-01 X 49143641 49143641 C T PPP1R3F 3'UTR 0.26 TCGA-EK-A2RD-01 X 64951823 64951823 C T MSN Silent p.L225L 0.10 TCGA-EK-A2RD-01 X 70444432 70444432 C G GJB1 3'UTR 0.12 TCGA-EK-A2RD-01 X 78616654 78616654 C G ITM2A Missense_Mutation p.D242H 0.14 tolerated(0.06) possibly_damaging(0.897) TCGA-EK-A2RD-01 X 9917430 9917430 C T SHROOM2 3'UTR 0.29 TCGA-EK-A2RE-01 11 45949830 45949830 C T GYLTL1B Silent p.Y619Y 0.42 TCGA-EK-A2RE-01 11 64756991 64756991 A T BATF2 Silent p.S145S 0.39 TCGA-EK-A2RE-01 12 772689 772689 G A NINJ2 5'UTR 0.31 TCGA-EK-A2RE-01 14 92600620 92600620 A T CPSF2 Silent p.T112T 0.39 TCGA-EK-A2RE-01 15 42764512 42764512 C T ZNF106 5'UTR 0.31 TCGA-EK-A2RE-01 16 11571713 11571713 C T CTD-3088G3.8 Missense_Mutation p.R803H 0.42 tolerated(0.53) unknown(0) TCGA-EK-A2RE-01 17 37563901 37563902 - T MED1 Frame_Shift_Ins p.S1525Ifs*3 0.35 TCGA-EK-A2RE-01 17 78449464 78449464 G A NPTX1 Nonsense_Mutation p.Q167* 0.37 TCGA-EK-A2RE-01 18 56034976 56034976 A C NEDD4L Splice_Site p.X688_splice 0.38 TCGA-EK-A2RE-01 19 14261736 14261736 C T LPHN1 Silent p.E1458E 0.57 TCGA-EK-A2RE-01 19 55333103 55333103 C A KIR3DL1 Silent p.R247R 0.45 TCGA-EK-A2RE-01 19 56732873 56732873 C T ZSCAN5A 3'UTR 0.34 TCGA-EK-A2RE-01 1 165370419 165370419 G A RXRG 3'UTR 0.55 TCGA-EK-A2RE-01 20 10629352 10629352 G A JAG1 Missense_Mutation p.R472C 0.30 deleterious(0.03) probably_damaging(0.912) TCGA-EK-A2RE-01 2 197064230 197064230 T G HECW2 3'UTR 0.34 TCGA-EK-A2RE-01 2 238601129 238601129 G A LRRFIP1 Missense_Mutation p.E11K 0.39 deleterious(0) probably_damaging(0.967) TCGA-EK-A2RE-01 2 27876450 27876450 C A SUPT7L Missense_Mutation p.D383Y 0.48 deleterious_low_confidence(0.03) benign(0.254) TCGA-EK-A2RE-01 3 30732976 30732976 C T TGFBR2 Missense_Mutation p.T555I 0.68 deleterious(0) probably_damaging(1) TCGA-EK-A2RE-01 3 33406150 33406150 G A FBXL2 Missense_Mutation p.G77S 0.55 deleterious(0.01) possibly_damaging(0.621) TCGA-EK-A2RE-01 5 154395781 154395781 C T KIF4B Missense_Mutation p.R788W 0.06 deleterious(0) benign(0.276) TCGA-EK-A2RE-01 5 170876248 170876248 C T FGF18 Silent p.L116L 0.27 TCGA-EK-A2RE-01 5 32089653 32089653 C T PDZD2 Silent p.S2033S 0.50 TCGA-EK-A2RE-01 6 47251881 47251881 T C TNFRSF21 Missense_Mutation p.I346V 0.39 deleterious(0) probably_damaging(0.995) TCGA-EK-A2RE-01 6 96655852 96655852 A - FUT9 3'UTR 0.37 TCGA-EK-A2RE-01 7 11446665 11446665 G A THSD7A Nonsense_Mutation p.R1312* 0.22 TCGA-EK-A2RE-01 7 30492144 30492144 G A NOD1 Missense_Mutation p.R297C 0.27 deleterious(0.02) possibly_damaging(0.81) TCGA-EK-A2RE-01 7 6182606 6182606 C T USP42 Missense_Mutation p.P280L 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-EK-A2RE-01 8 21767414 21767414 C T DOK2 Missense_Mutation p.R216H 0.35 deleterious(0) probably_damaging(1) TCGA-EK-A2RE-01 9 77703527 77703528 TG - OSTF1 5'UTR 0.49 TCGA-EK-A2RE-01 X 31139061 31139061 T A DMD 3'UTR 0.51 TCGA-EK-A2RE-01 X 74376046 74376046 C T ABCB7 Missense_Mutation p.R21H 0.07 tolerated_low_confidence(0.1) benign(0.002) TCGA-EK-A2RJ-01 10 11378070 11378070 C T CELF2 3'UTR 0.36 TCGA-EK-A2RJ-01 10 11378258 11378258 G C CELF2 3'UTR 0.12 TCGA-EK-A2RJ-01 10 24762561 24762561 C T KIAA1217 Silent p.V417V 0.30 TCGA-EK-A2RJ-01 10 5541468 5541468 C G CALML5 5'UTR 0.20 TCGA-EK-A2RJ-01 10 70940132 70940132 C T SUPV3L1 Missense_Mutation p.R29C 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.794) TCGA-EK-A2RJ-01 10 85968517 85968517 G A CDHR1 Silent p.V400V 0.33 TCGA-EK-A2RJ-01 10 92508659 92508659 G C HTR7 Nonsense_Mutation p.S411* 0.11 TCGA-EK-A2RJ-01 11 102248819 102248819 C G BIRC2 Missense_Mutation p.H588D 0.12 deleterious(0) probably_damaging(1) TCGA-EK-A2RJ-01 11 103908011 103908011 C T DDI1 Missense_Mutation p.P154L 0.25 deleterious(0) possibly_damaging(0.703) TCGA-EK-A2RJ-01 11 112104360 112104360 C T PTS 3'UTR 0.20 TCGA-EK-A2RJ-01 11 117772146 117772146 G C TMPRSS13 3'Flank 0.21 TCGA-EK-A2RJ-01 11 118081245 118081245 G A AMICA1 Silent p.F127F 0.22 TCGA-EK-A2RJ-01 11 118968001 118968001 C G DPAGT1 Missense_Mutation p.E338Q 0.21 tolerated(0.41) benign(0.063) TCGA-EK-A2RJ-01 11 121391423 121391423 C G SORL1 Silent p.V423V 0.15 TCGA-EK-A2RJ-01 11 124637152 124637152 C T MSANTD2 Missense_Mutation p.E482K 0.37 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-EK-A2RJ-01 11 125315969 125315969 G A FEZ1 3'UTR 0.11 TCGA-EK-A2RJ-01 11 12883846 12883846 G A TEAD1 Silent p.T84T 0.13 TCGA-EK-A2RJ-01 11 134118790 134118790 G A THYN1 Missense_Mutation p.H182Y 0.19 tolerated(0.29) benign(0.255) TCGA-EK-A2RJ-01 11 16119218 16119218 T C SOX6 Silent p.V305V 0.29 TCGA-EK-A2RJ-01 11 25103654 25103654 C T LUZP2 3'Flank 0.25 TCGA-EK-A2RJ-01 11 25104010 25104010 T C LUZP2 3'Flank 0.33 TCGA-EK-A2RJ-01 11 46639356 46639356 C G ATG13 5'UTR 0.33 TCGA-EK-A2RJ-01 11 46698687 46698687 G A ARHGAP1 3'UTR 0.17 TCGA-EK-A2RJ-01 11 55578973 55578973 G C OR5L1 Missense_Mutation p.E11Q 0.10 tolerated(0.05) benign(0.046) TCGA-EK-A2RJ-01 11 60620887 60620887 G A PTGDR2 Silent p.F103F 0.11 TCGA-EK-A2RJ-01 11 61567586 61567586 G C FADS1 3'UTR 0.36 TCGA-EK-A2RJ-01 11 62678196 62678196 G T CHRM1 Missense_Mutation p.S126Y 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EK-A2RJ-01 11 64027557 64027557 G C PLCB3 Missense_Mutation p.E528Q 0.19 tolerated(0.12) possibly_damaging(0.645) TCGA-EK-A2RJ-01 11 64027604 64027604 G C PLCB3 Silent p.L543L 0.26 TCGA-EK-A2RJ-01 11 64577150 64577150 G A MEN1 Silent p.F144F 0.13 TCGA-EK-A2RJ-01 11 65271870 65271870 G A MALAT1 RNA 0.26 TCGA-EK-A2RJ-01 11 65481258 65481258 G A KAT5 Missense_Mutation p.R210H 0.17 tolerated(0.13) benign(0.022) TCGA-EK-A2RJ-01 11 68701260 68701260 C T IGHMBP2 Intron 0.29 TCGA-EK-A2RJ-01 11 71944780 71944780 C T INPPL1 Missense_Mutation p.S735F 0.35 deleterious(0.02) probably_damaging(0.944) TCGA-EK-A2RJ-01 11 73122475 73122475 G C FAM168A Missense_Mutation p.I128M 0.36 tolerated(0.14) possibly_damaging(0.844) TCGA-EK-A2RJ-01 11 73431902 73431902 C G RAB6A Missense_Mutation p.E58Q 0.19 deleterious(0) possibly_damaging(0.748) TCGA-EK-A2RJ-01 11 76956345 76956345 G C GDPD4 Missense_Mutation p.S356C 0.39 deleterious(0) probably_damaging(0.993) TCGA-EK-A2RJ-01 11 82564297 82564297 C T PRCP Silent p.E132E 0.14 TCGA-EK-A2RJ-01 11 82877695 82877695 G A PCF11 Missense_Mutation p.E586K 0.50 tolerated(0.13) benign(0.01) TCGA-EK-A2RJ-01 11 86126335 86126335 G C CCDC81 Missense_Mutation p.M557I 0.48 deleterious(0.01) possibly_damaging(0.841) TCGA-EK-A2RJ-01 11 89880621 89880621 C T NAALAD2 Silent p.L106L 0.07 TCGA-EK-A2RJ-01 11 9867227 9867227 G A SBF2 Nonsense_Mutation p.Q999* 0.30 TCGA-EK-A2RJ-01 12 105388413 105388413 C T C12orf45 Missense_Mutation p.S166F 0.18 deleterious(0) possibly_damaging(0.861) TCGA-EK-A2RJ-01 12 109051199 109051199 C T CORO1C Missense_Mutation p.E211K 0.13 deleterious(0.01) benign(0.359) TCGA-EK-A2RJ-01 12 110734533 110734533 G C ATP2A2 Missense_Mutation p.E152Q 0.17 deleterious(0.01) possibly_damaging(0.635) TCGA-EK-A2RJ-01 12 123686727 123686727 G C MPHOSPH9 Missense_Mutation p.Q489E 0.22 tolerated(0.08) benign(0.006) TCGA-EK-A2RJ-01 12 131487356 131487356 C T GPR133 Intron 0.09 TCGA-EK-A2RJ-01 12 133196044 133196044 A T P2RX2 Nonsense_Mutation p.K65* 0.22 TCGA-EK-A2RJ-01 12 133313568 133313568 C T ANKLE2 Missense_Mutation p.E502K 0.36 tolerated(0.4) benign(0.037) TCGA-EK-A2RJ-01 12 133398642 133398642 C T GOLGA3 Missense_Mutation p.E25K 0.18 tolerated_low_confidence(0.07) benign(0.014) TCGA-EK-A2RJ-01 12 15800130 15800130 C G EPS8 Missense_Mutation p.R500T 0.16 tolerated(0.08) probably_damaging(0.919) TCGA-EK-A2RJ-01 12 15813561 15813561 C G EPS8 Missense_Mutation p.R308S 0.08 deleterious(0.01) benign(0.004) TCGA-EK-A2RJ-01 12 27950964 27950964 G A KLHL42 Silent p.S461S 0.31 TCGA-EK-A2RJ-01 12 2983188 2983188 G A FOXM1 Missense_Mutation p.P153S 0.07 tolerated(0.17) benign(0.012) TCGA-EK-A2RJ-01 12 2983191 2983191 G A FOXM1 Missense_Mutation p.L152F 0.08 tolerated(0.23) possibly_damaging(0.562) TCGA-EK-A2RJ-01 12 30887963 30887963 C G CAPRIN2 Missense_Mutation p.E250Q 0.25 tolerated(0.19) benign(0.307) TCGA-EK-A2RJ-01 12 33579277 33579277 C G SYT10 Missense_Mutation p.S102T 0.24 tolerated(0.42) benign(0.031) TCGA-EK-A2RJ-01 12 416238 416238 G A KDM5A Silent p.F1316F 0.09 TCGA-EK-A2RJ-01 12 45567829 45567829 C A PLEKHA8P1 RNA 0.08 TCGA-EK-A2RJ-01 12 5154962 5154962 G C KCNA5 Missense_Mutation p.R550T 0.20 tolerated_low_confidence(0.72) benign(0) TCGA-EK-A2RJ-01 12 53344643 53344643 G C KRT18 Missense_Mutation p.E204Q 0.25 deleterious(0.01) possibly_damaging(0.83) TCGA-EK-A2RJ-01 12 53451429 53451429 C G TENC1 Silent p.L318L 0.15 TCGA-EK-A2RJ-01 12 56365402 56365402 G A CDK2 Missense_Mutation p.R297Q 0.22 tolerated_low_confidence(0.21) benign(0.013) TCGA-EK-A2RJ-01 12 56693956 56693956 G C CS Silent p.L10L 0.13 TCGA-EK-A2RJ-01 12 57057908 57057908 G A PTGES3 3'UTR 0.18 TCGA-EK-A2RJ-01 12 7277327 7277327 C G RBP5 Splice_Site p.X85_splice 0.30 TCGA-EK-A2RJ-01 12 7882230 7882230 G A CLEC4C Nonsense_Mutation p.Q202* 0.11 TCGA-EK-A2RJ-01 12 8234866 8234866 C T NECAP1 5'UTR 0.20 TCGA-EK-A2RJ-01 12 89741944 89741944 C T DUSP6 3'UTR 0.18 TCGA-EK-A2RJ-01 12 92818434 92818434 C T CLLU1 5'UTR 0.09 TCGA-EK-A2RJ-01 12 95676223 95676223 G A VEZT Silent p.V377V 0.13 TCGA-EK-A2RJ-01 13 21619910 21619910 G A LATS2 Missense_Mutation p.P86S 0.28 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RJ-01 13 21950739 21950739 G A ZDHHC20 3'UTR 0.20 TCGA-EK-A2RJ-01 13 28539078 28539078 G A CDX2 Missense_Mutation p.H206Y 0.19 deleterious(0) possibly_damaging(0.495) TCGA-EK-A2RJ-01 13 30071399 30071399 C T MTUS2 Nonsense_Mutation p.Q1212* 0.16 TCGA-EK-A2RJ-01 13 35622736 35622736 C T NBEA Nonsense_Mutation p.Q254* 0.16 TCGA-EK-A2RJ-01 13 35751232 35751232 C T NBEA Missense_Mutation p.R1552W 0.30 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RJ-01 13 36245354 36245354 G A NBEA 3'UTR 0.10 TCGA-EK-A2RJ-01 13 36245739 36245739 G A NBEA 3'UTR 0.14 TCGA-EK-A2RJ-01 13 36245752 36245752 G C NBEA 3'UTR 0.17 TCGA-EK-A2RJ-01 13 45148542 45148542 G A TSC22D1 Nonsense_Mutation p.Q557* 0.22 TCGA-EK-A2RJ-01 13 46539507 46539507 C T ZC3H13 Missense_Mutation p.G1461E 0.15 unknown(0) TCGA-EK-A2RJ-01 13 50206269 50206269 C G ARL11 3'UTR 0.28 TCGA-EK-A2RJ-01 13 50206655 50206655 C G ARL11 3'UTR 0.14 TCGA-EK-A2RJ-01 13 77817203 77817203 C T MYCBP2 Missense_Mutation p.E836K 0.18 probably_damaging(0.921) TCGA-EK-A2RJ-01 13 77817206 77817206 C T MYCBP2 Missense_Mutation p.E835K 0.17 possibly_damaging(0.881) TCGA-EK-A2RJ-01 13 84456401 84456401 C A SLITRK1 5'UTR 0.22 TCGA-EK-A2RJ-01 14 101449326 101449326 G A SNORD114-22 RNA 0.22 TCGA-EK-A2RJ-01 14 105413217 105413217 C G AHNAK2 Missense_Mutation p.K2857N 0.13 probably_damaging(0.988) TCGA-EK-A2RJ-01 14 51099208 51099208 C T ATL1 3'UTR 0.23 TCGA-EK-A2RJ-01 14 58563526 58563526 C G C14orf37 Missense_Mutation p.E669Q 0.08 tolerated(0.05) possibly_damaging(0.607) TCGA-EK-A2RJ-01 14 69259641 69259641 G A ZFP36L1 Silent p.L5L 0.22 TCGA-EK-A2RJ-01 14 69522025 69522025 C G DCAF5 Missense_Mutation p.E460Q 0.32 deleterious(0.02) benign(0.261) TCGA-EK-A2RJ-01 14 76420866 76420866 C T TTLL5 3'UTR 0.23 TCGA-EK-A2RJ-01 14 90872233 90872233 G C CALM1 3'UTR 0.17 TCGA-EK-A2RJ-01 14 93649864 93649864 C T MOAP1 Missense_Mutation p.G242R 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-EK-A2RJ-01 14 95898436 95898436 C T SYNE3 Missense_Mutation p.E903K 0.14 tolerated(0.16) benign(0.015) TCGA-EK-A2RJ-01 14 96152883 96152883 G C TCL1B Missense_Mutation p.E27Q 0.35 tolerated(0.07) probably_damaging(0.985) TCGA-EK-A2RJ-01 15 20649647 20649647 C T HERC2P3 RNA 0.14 TCGA-EK-A2RJ-01 15 22383199 22383199 C T OR4N4 Missense_Mutation p.R243C 0.12 deleterious(0) possibly_damaging(0.512) TCGA-EK-A2RJ-01 15 30012692 30012692 G A TJP1 Missense_Mutation p.S878F 0.17 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RJ-01 15 34021064 34021064 C A RYR3 Nonsense_Mutation p.S2347* 0.13 TCGA-EK-A2RJ-01 15 35273536 35273536 A C ZNF770 3'UTR 0.13 TCGA-EK-A2RJ-01 15 40476080 40476080 C T BUB1B Silent p.L249L 0.12 TCGA-EK-A2RJ-01 15 41523590 41523590 C G CHP1 Missense_Mutation p.R4G 0.10 tolerated(0.35) benign(0.133) TCGA-EK-A2RJ-01 15 42446400 42446400 G A PLA2G4F Missense_Mutation p.L114F 0.17 tolerated(0.12) probably_damaging(0.951) TCGA-EK-A2RJ-01 15 43628873 43628873 G C ADAL Missense_Mutation p.D82H 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-EK-A2RJ-01 15 43900307 43900307 G C STRC Missense_Mutation p.Q1218E 0.09 tolerated(1) possibly_damaging(0.608) TCGA-EK-A2RJ-01 15 49860490 49860490 C T FAM227B Silent p.V233V 0.15 TCGA-EK-A2RJ-01 15 54003550 54003550 G A WDR72 Silent p.I280I 0.21 TCGA-EK-A2RJ-01 15 55475510 55475510 C T RSL24D1 Intron 0.14 TCGA-EK-A2RJ-01 15 59970209 59970209 C G BNIP2 Missense_Mutation p.E246Q 0.10 tolerated(0.07) possibly_damaging(0.868) TCGA-EK-A2RJ-01 15 63449466 63449466 G A RPS27L Intron 0.15 TCGA-EK-A2RJ-01 15 64404874 64404874 C G SNX1 Missense_Mutation p.L88V 0.13 deleterious(0.01) possibly_damaging(0.499) TCGA-EK-A2RJ-01 15 66625346 66625346 G C DIS3L Missense_Mutation p.R954T 0.18 deleterious(0.04) benign(0.082) TCGA-EK-A2RJ-01 15 67457410 67457410 G C SMAD3 Missense_Mutation p.Q128H 0.32 deleterious(0.02) possibly_damaging(0.528) TCGA-EK-A2RJ-01 15 75648960 75648960 C T MAN2C1 Silent p.L925L 0.09 TCGA-EK-A2RJ-01 15 90016047 90016047 G T RHCG Missense_Mutation p.F453L 0.17 tolerated(0.93) benign(0.001) TCGA-EK-A2RJ-01 16 15704917 15704917 C G KIAA0430 Missense_Mutation p.L1222F 0.21 deleterious(0.05) probably_damaging(1) TCGA-EK-A2RJ-01 16 18532165 18532165 C T NOMO2 Missense_Mutation p.R732K 0.10 tolerated(1) benign(0.001) TCGA-EK-A2RJ-01 16 18532172 18532172 C T NOMO2 Missense_Mutation p.E730K 0.11 tolerated(0.88) benign(0.002) TCGA-EK-A2RJ-01 16 23568552 23568552 C G EARS2 Missense_Mutation p.R38P 0.25 deleterious(0) probably_damaging(1) TCGA-EK-A2RJ-01 16 29876521 29876521 G C CDIPT 5'Flank 0.07 TCGA-EK-A2RJ-01 16 29910335 29910335 C T SEZ6L2 Silent p.G2G 0.25 TCGA-EK-A2RJ-01 16 30537365 30537365 C T ZNF768 Missense_Mutation p.M32I 0.17 tolerated_low_confidence(0.18) benign(0) TCGA-EK-A2RJ-01 16 30537662 30537662 C T ZNF768 Missense_Mutation p.E25K 0.50 deleterious_low_confidence(0) benign(0.023) TCGA-EK-A2RJ-01 16 30681245 30681245 G A FBRS 3'UTR 0.14 TCGA-EK-A2RJ-01 16 3598136 3598136 C T NLRC3 Missense_Mutation p.D970N 0.25 tolerated(0.28) possibly_damaging(0.812) TCGA-EK-A2RJ-01 16 47007557 47007557 C G DNAJA2 5'UTR 0.10 TCGA-EK-A2RJ-01 16 56500113 56500113 C T OGFOD1 Silent p.F166F 0.10 TCGA-EK-A2RJ-01 16 61747856 61747856 G C CDH8 Missense_Mutation p.Q515E 0.12 tolerated(0.07) benign(0.339) TCGA-EK-A2RJ-01 16 66822113 66822113 C G CCDC79 Missense_Mutation p.R120T 0.21 deleterious(0) probably_damaging(0.993) TCGA-EK-A2RJ-01 16 67855080 67855080 C G TSNAXIP1 Silent p.L59L 0.16 TCGA-EK-A2RJ-01 16 72017957 72017957 G A PKD1L3 RNA 0.19 TCGA-EK-A2RJ-01 16 72154011 72154011 G A PMFBP1 Intron 0.25 TCGA-EK-A2RJ-01 16 77317665 77317665 C T ADAMTS18 3'UTR 0.28 TCGA-EK-A2RJ-01 16 89294284 89294284 G A ZNF778 Missense_Mutation p.E502K 0.28 tolerated(0.13) benign(0.029) TCGA-EK-A2RJ-01 16 8948920 8948920 G A CARHSP1 3'UTR 0.26 TCGA-EK-A2RJ-01 16 9002295 9002295 C T USP7 Missense_Mutation p.G392S 0.15 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RJ-01 17 15133579 15133579 G T PMP22 3'UTR 0.34 TCGA-EK-A2RJ-01 17 1634415 1634415 G A WDR81 Silent p.A1340A 0.29 TCGA-EK-A2RJ-01 17 18882047 18882047 C G FAM83G Missense_Mutation p.S311T 0.34 deleterious(0.01) benign(0.271) TCGA-EK-A2RJ-01 17 30551773 30551773 C T RHOT1 3'UTR 0.43 TCGA-EK-A2RJ-01 17 3839609 3839609 C T ATP2A3 Missense_Mutation p.E826K 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-EK-A2RJ-01 17 3839724 3839724 C T ATP2A3 Silent p.L787L 0.17 TCGA-EK-A2RJ-01 17 39538343 39538343 G A KRT34 Silent p.F94F 0.24 TCGA-EK-A2RJ-01 17 41738509 41738509 C T MEOX1 Missense_Mutation p.D132N 0.13 tolerated(0.07) benign(0.032) TCGA-EK-A2RJ-01 17 45918151 45918151 G A SCRN2 Missense_Mutation p.P20L 0.28 deleterious(0) unknown(0) TCGA-EK-A2RJ-01 17 45918160 45918160 G A SCRN2 Missense_Mutation p.S17F 0.29 deleterious(0) unknown(0) TCGA-EK-A2RJ-01 17 48051276 48051276 C G DLX4 Nonsense_Mutation p.S231* 0.16 TCGA-EK-A2RJ-01 17 48355920 48355920 C G TMEM92 Silent p.A33A 0.32 TCGA-EK-A2RJ-01 17 48797096 48797096 G C LUC7L3 Translation_Start_Site p.M1? 0.15 deleterious(0.04) benign(0.126) TCGA-EK-A2RJ-01 17 56565423 56565423 G A HSF5 Silent p.L71L 0.40 TCGA-EK-A2RJ-01 17 57643020 57643020 C T DHX40 5'UTR 0.11 TCGA-EK-A2RJ-01 17 6014195 6014195 G A WSCD1 Missense_Mutation p.E372K 0.11 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RJ-01 17 7155785 7155785 C T ELP5 5'UTR 0.25 TCGA-EK-A2RJ-01 17 73126733 73126733 C T NT5C Silent p.Q152Q 0.14 TCGA-EK-A2RJ-01 17 73201869 73201869 G A NUP85 Missense_Mutation p.D5N 0.12 deleterious_low_confidence(0) possibly_damaging(0.559) TCGA-EK-A2RJ-01 17 73624459 73624459 C T RECQL5 Missense_Mutation p.E882K 0.10 tolerated(0.08) benign(0.003) TCGA-EK-A2RJ-01 17 7492582 7492582 C T SOX15 Missense_Mutation p.R138K 0.20 tolerated_low_confidence(0.81) benign(0.01) TCGA-EK-A2RJ-01 17 76212746 76212746 G C BIRC5 Missense_Mutation p.E98Q 0.16 tolerated(0.16) benign(0.03) TCGA-EK-A2RJ-01 17 78166351 78166351 G C CARD14 Missense_Mutation p.R430P 0.29 tolerated(0.07) benign(0.044) TCGA-EK-A2RJ-01 17 8169658 8169658 C T PFAS Silent p.V936V 0.22 TCGA-EK-A2RJ-01 18 10670936 10670936 C T PIEZO2 3'Flank 0.15 TCGA-EK-A2RJ-01 18 11853495 11853495 G A CHMP1B 3'UTR 0.31 TCGA-EK-A2RJ-01 18 11853496 11853496 G A CHMP1B 3'UTR 0.31 TCGA-EK-A2RJ-01 18 11853653 11853653 G T CHMP1B 3'UTR 0.25 TCGA-EK-A2RJ-01 18 29056197 29056197 G A DSG3 Missense_Mutation p.E992K 0.17 tolerated(0.11) benign(0.012) TCGA-EK-A2RJ-01 18 43223998 43223998 C G SLC14A2 Missense_Mutation p.I408M 0.14 tolerated(0.08) benign(0.027) TCGA-EK-A2RJ-01 18 52890825 52890825 G C TCF4 3'Flank 0.19 TCGA-EK-A2RJ-01 18 61627399 61627399 C T HMSD Missense_Mutation p.T77I 0.39 tolerated(0.16) benign(0.03) TCGA-EK-A2RJ-01 18 9281101 9281101 G A ANKRD12 Missense_Mutation p.D2056N 0.16 deleterious(0.01) probably_damaging(1) TCGA-EK-A2RJ-01 19 10432289 10432289 G A RAVER1 Silent p.P410P 0.26 TCGA-EK-A2RJ-01 19 1123596 1123596 C G SBNO2 Missense_Mutation p.E189Q 0.17 deleterious(0.01) benign(0.028) TCGA-EK-A2RJ-01 19 12444526 12444526 G C ZNF563 5'Flank 0.27 TCGA-EK-A2RJ-01 19 12739990 12739990 G A ZNF791 Silent p.E549E 0.21 TCGA-EK-A2RJ-01 19 1278930 1278930 G A C19orf24 3'UTR 0.22 TCGA-EK-A2RJ-01 19 12954365 12954365 C G MAST1 Missense_Mutation p.L91V 0.21 tolerated(0.11) possibly_damaging(0.836) TCGA-EK-A2RJ-01 19 1430343 1430343 G A DAZAP1 Missense_Mutation p.G285S 0.28 tolerated(0.24) unknown(0) TCGA-EK-A2RJ-01 19 17417161 17417161 C T MRPL34 Silent p.L84L 0.33 TCGA-EK-A2RJ-01 19 21477341 21477341 C G ZNF708 Missense_Mutation p.D143H 0.26 tolerated(0.14) benign(0.011) TCGA-EK-A2RJ-01 19 2214634 2214634 C T DOT1L Intron 0.17 TCGA-EK-A2RJ-01 19 2271471 2271471 C T OAZ1 Missense_Mutation p.P78L 0.23 deleterious(0) probably_damaging(0.993) TCGA-EK-A2RJ-01 19 2271912 2271912 C G OAZ1 Missense_Mutation p.I141M 0.25 deleterious(0) probably_damaging(0.915) TCGA-EK-A2RJ-01 19 24289360 24289360 C T ZNF254 Silent p.V56V 0.24 TCGA-EK-A2RJ-01 19 3224933 3224933 G C CELF5 Missense_Mutation p.E66Q 0.21 deleterious(0.01) benign(0.089) TCGA-EK-A2RJ-01 19 35530121 35530121 G C SCN1B 3'Flank 0.14 TCGA-EK-A2RJ-01 19 36128198 36128198 G A RBM42 Missense_Mutation p.G425D 0.19 deleterious(0) unknown(0) TCGA-EK-A2RJ-01 19 36297634 36297634 C T PRODH2 Nonsense_Mutation p.W335* 0.08 TCGA-EK-A2RJ-01 19 36335218 36335218 C T NPHS1 Intron 0.10 TCGA-EK-A2RJ-01 19 36365690 36365690 G C APLP1 Missense_Mutation p.Q421H 0.11 deleterious(0) benign(0.161) TCGA-EK-A2RJ-01 19 36564641 36564641 C T WDR62 Intron 0.16 TCGA-EK-A2RJ-01 19 36643379 36643379 C T COX7A1 5'UTR 0.10 TCGA-EK-A2RJ-01 19 38875118 38875118 G C GGN Missense_Mutation p.I631M 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EK-A2RJ-01 19 39876858 39876858 C T PAF1 Missense_Mutation p.D457N 0.06 deleterious_low_confidence(0.02) unknown(0) TCGA-EK-A2RJ-01 19 39923928 39923928 C T RPS16 Silent p.Q142Q 0.08 TCGA-EK-A2RJ-01 19 39994804 39994804 C T DLL3 Missense_Mutation p.T249M 0.10 deleterious(0.02) benign(0.155) TCGA-EK-A2RJ-01 19 41825618 41825618 G A CCDC97 Silent p.G214G 0.07 TCGA-EK-A2RJ-01 19 42132063 42132063 G A CEACAM4 Silent p.I112I 0.07 TCGA-EK-A2RJ-01 19 42736279 42736279 G C GSK3A Silent p.L436L 0.11 TCGA-EK-A2RJ-01 19 42736669 42736669 G C GSK3A Missense_Mutation p.L422V 0.13 deleterious(0) possibly_damaging(0.56) TCGA-EK-A2RJ-01 19 42736791 42736791 G C GSK3A Missense_Mutation p.S381C 0.20 deleterious(0.02) possibly_damaging(0.71) TCGA-EK-A2RJ-01 19 42736796 42736796 G A GSK3A Silent p.L379L 0.23 TCGA-EK-A2RJ-01 19 42736812 42736812 G A GSK3A Missense_Mutation p.P374L 0.16 deleterious(0.04) benign(0.063) TCGA-EK-A2RJ-01 19 42813636 42813636 C T PRR19 5'UTR 0.21 TCGA-EK-A2RJ-01 19 43258423 43258423 C T PSG8 3'UTR 0.06 TCGA-EK-A2RJ-01 19 43420377 43420377 C G PSG6 Missense_Mutation p.Q109H 0.04 deleterious(0.02) benign(0.063) TCGA-EK-A2RJ-01 19 43420565 43420565 C G PSG6 Missense_Mutation p.E47Q 0.07 deleterious(0.03) possibly_damaging(0.858) TCGA-EK-A2RJ-01 19 43519492 43519492 G A PSG11 Missense_Mutation p.S247L 0.30 tolerated(0.09) benign(0.341) TCGA-EK-A2RJ-01 19 45375367 45375367 G A PVRL2 Missense_Mutation p.E246K 0.10 tolerated(0.38) benign(0.012) TCGA-EK-A2RJ-01 19 46026015 46026015 G A VASP Missense_Mutation p.E254K 0.17 tolerated(0.09) possibly_damaging(0.893) TCGA-EK-A2RJ-01 19 46094444 46094444 G C GPR4 Silent p.L227L 0.09 TCGA-EK-A2RJ-01 19 46289821 46289821 G A DMWD Silent p.F311F 0.12 TCGA-EK-A2RJ-01 19 46290067 46290067 G C DMWD Missense_Mutation p.F229L 0.11 deleterious(0.04) benign(0) TCGA-EK-A2RJ-01 19 47223904 47223904 G A STRN4 Silent p.L746L 0.28 TCGA-EK-A2RJ-01 19 47225314 47225314 G C STRN4 Missense_Mutation p.S681C 0.11 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RJ-01 19 47242074 47242074 G C STRN4 Missense_Mutation p.I118M 0.10 deleterious(0) probably_damaging(0.984) TCGA-EK-A2RJ-01 19 4852299 4852299 G T PLIN3 Silent p.T121T 0.31 TCGA-EK-A2RJ-01 19 49230681 49230681 T A RASIP1 Missense_Mutation p.I614F 0.51 deleterious(0) possibly_damaging(0.849) TCGA-EK-A2RJ-01 19 4929293 4929293 C A MIR4747 5'Flank 0.20 TCGA-EK-A2RJ-01 19 49510586 49510586 G A RUVBL2 Silent p.E141E 0.10 TCGA-EK-A2RJ-01 19 49691917 49691917 C T TRPM4 Missense_Mutation p.S588L 0.23 deleterious(0) possibly_damaging(0.778) TCGA-EK-A2RJ-01 19 51022360 51022360 C G LRRC4B Missense_Mutation p.E204Q 0.06 tolerated(0.12) benign(0.319) TCGA-EK-A2RJ-01 19 51297831 51297831 G C ACPT Missense_Mutation p.D327H 0.16 deleterious(0.04) possibly_damaging(0.879) TCGA-EK-A2RJ-01 19 52659404 52659404 G A ZNF836 Missense_Mutation p.S511L 0.17 deleterious(0.05) probably_damaging(0.916) TCGA-EK-A2RJ-01 19 53344689 53344689 G C ZNF468 Silent p.L286L 0.26 TCGA-EK-A2RJ-01 19 54721003 54721003 G C LILRB3 Missense_Mutation p.P620A 0.05 deleterious(0.02) probably_damaging(0.997) TCGA-EK-A2RJ-01 19 56895976 56895976 C G ZNF582 Missense_Mutation p.L270F 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-EK-A2RJ-01 19 58324732 58324732 G A ZNF552 Silent p.L30L 0.16 TCGA-EK-A2RJ-01 19 6411873 6411873 A T KHSRP 3'Flank 0.10 TCGA-EK-A2RJ-01 19 8397920 8397920 G A KANK3 Silent p.I638I 0.34 TCGA-EK-A2RJ-01 1 110775285 110775285 C T KCNC4 3'UTR 0.38 TCGA-EK-A2RJ-01 1 114443928 114443928 G A AP4B1 Silent p.L183L 0.23 TCGA-EK-A2RJ-01 1 115143494 115143494 C T DENND2C Missense_Mutation p.A635T 0.23 deleterious(0) probably_damaging(1) TCGA-EK-A2RJ-01 1 115166239 115166239 G A DENND2C Nonsense_Mutation p.Q278* 0.18 TCGA-EK-A2RJ-01 1 14108373 14108373 G C PRDM2 Missense_Mutation p.K1361N 0.19 unknown(0) TCGA-EK-A2RJ-01 1 144014055 144014055 C G SRGAP2B RNA 0.09 TCGA-EK-A2RJ-01 1 145609334 145609334 C G POLR3C Translation_Start_Site p.M1? 0.08 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RJ-01 1 149949501 149949501 C G OTUD7B 5'UTR 0.10 TCGA-EK-A2RJ-01 1 150128266 150128266 G C PLEKHO1 Missense_Mutation p.D62H 0.15 deleterious(0) probably_damaging(0.938) TCGA-EK-A2RJ-01 1 150667193 150667193 G C GOLPH3L Missense_Mutation p.S41C 0.17 deleterious(0.03) benign(0.005) TCGA-EK-A2RJ-01 1 151108092 151108092 C T SEMA6C Missense_Mutation p.E470K 0.45 deleterious(0) benign(0.273) TCGA-EK-A2RJ-01 1 151491199 151491199 C G CGN Silent p.L68L 0.16 TCGA-EK-A2RJ-01 1 151734851 151734851 C T MRPL9 Splice_Site p.X145_splice 0.80 TCGA-EK-A2RJ-01 1 152275379 152275379 G C FLG Missense_Mutation p.Q3995E 0.08 unknown(0) TCGA-EK-A2RJ-01 1 152276263 152276263 G A FLG Missense_Mutation p.S3700L 0.12 unknown(0) TCGA-EK-A2RJ-01 1 152286961 152286961 C G FLG Missense_Mutation p.R134T 0.08 possibly_damaging(0.52) TCGA-EK-A2RJ-01 1 152573352 152573352 G C LCE3C Missense_Mutation p.E49Q 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-EK-A2RJ-01 1 153391657 153391657 G C S100A7A Missense_Mutation p.E60Q 0.10 deleterious(0.04) possibly_damaging(0.455) TCGA-EK-A2RJ-01 1 154947136 154947136 G C CKS1B 5'Flank 0.06 TCGA-EK-A2RJ-01 1 156376809 156376809 C G C1orf61 Intron 0.25 TCGA-EK-A2RJ-01 1 15789917 15789917 C T CELA2A Silent p.V131V 0.25 TCGA-EK-A2RJ-01 1 159888291 159888291 G A TAGLN2 3'UTR 0.38 TCGA-EK-A2RJ-01 1 16074199 16074199 G A TMEM82 3'UTR 0.29 TCGA-EK-A2RJ-01 1 161512771 161512771 T C FCGR3A 3'UTR 0.39 TCGA-EK-A2RJ-01 1 175331893 175331893 G A TNR Silent p.I920I 0.08 TCGA-EK-A2RJ-01 1 180062302 180062302 G C CEP350 Missense_Mutation p.K2354N 0.17 benign(0.347) TCGA-EK-A2RJ-01 1 180063347 180063347 G C CEP350 Missense_Mutation p.E2703Q 0.27 benign(0.001) TCGA-EK-A2RJ-01 1 19583621 19583621 C T MRTO4 Silent p.Y85Y 0.11 TCGA-EK-A2RJ-01 1 198700745 198700745 G C PTPRC Splice_Site p.X622_splice 0.15 TCGA-EK-A2RJ-01 1 202158049 202158049 G C LGR6 5'Flank 0.08 TCGA-EK-A2RJ-01 1 203316850 203316850 G A FMOD Silent p.L183L 0.12 TCGA-EK-A2RJ-01 1 207881609 207881609 G A CR1L Splice_Site p.X472_splice 0.13 TCGA-EK-A2RJ-01 1 215955461 215955461 C A USH2A Nonsense_Mutation p.E3555* 0.22 TCGA-EK-A2RJ-01 1 220275594 220275594 G C IARS2 Missense_Mutation p.R225T 0.17 tolerated(0.46) benign(0.038) TCGA-EK-A2RJ-01 1 236703888 236703888 C G LGALS8 Missense_Mutation p.L124V 0.24 deleterious(0.01) possibly_damaging(0.552) TCGA-EK-A2RJ-01 1 237756843 237756843 C T RYR2 Missense_Mutation p.S1448L 0.12 benign(0.111) TCGA-EK-A2RJ-01 1 237936946 237936946 C T RYR2 Nonsense_Mutation p.Q3925* 0.11 TCGA-EK-A2RJ-01 1 240655151 240655151 G A GREM2 3'UTR 0.14 TCGA-EK-A2RJ-01 1 245766083 245766083 C T KIF26B Nonsense_Mutation p.Q519* 0.18 TCGA-EK-A2RJ-01 1 36762219 36762219 C T THRAP3 Silent p.L717L 0.36 TCGA-EK-A2RJ-01 1 3683846 3683846 C T CCDC27 Missense_Mutation p.S527L 0.08 tolerated(0.13) benign(0.1) TCGA-EK-A2RJ-01 1 46546413 46546413 G C PIK3R3 Missense_Mutation p.P39R 0.22 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RJ-01 1 53974848 53974848 G C GLIS1 Missense_Mutation p.F550L 0.16 deleterious(0.04) probably_damaging(0.965) TCGA-EK-A2RJ-01 1 55451823 55451823 C A TMEM61 Missense_Mutation p.S23R 0.28 deleterious(0.02) possibly_damaging(0.455) TCGA-EK-A2RJ-01 1 59247422 59247422 G C JUN 3'UTR 0.14 TCGA-EK-A2RJ-01 1 62672545 62672545 G C L1TD1 Missense_Mutation p.G82A 0.32 tolerated(1) unknown(0) TCGA-EK-A2RJ-01 1 62703874 62703874 C A KANK4 3'UTR 0.17 TCGA-EK-A2RJ-01 1 66723177 66723177 C T PDE4B Intron 0.20 TCGA-EK-A2RJ-01 1 89473327 89473327 C G GBP3 3'UTR 0.23 TCGA-EK-A2RJ-01 1 91859929 91859929 G A HFM1 Missense_Mutation p.S72L 0.23 deleterious_low_confidence(0.04) benign(0.007) TCGA-EK-A2RJ-01 20 17585273 17585273 C G DSTN Missense_Mutation p.Q129E 0.20 tolerated(0.19) benign(0.005) TCGA-EK-A2RJ-01 20 21492756 21492756 G C NKX2-2 Silent p.V209V 0.23 TCGA-EK-A2RJ-01 20 2312838 2312838 G A TGM3 Silent p.L508L 0.08 TCGA-EK-A2RJ-01 20 23584064 23584064 G A CST9 3'UTR 0.27 TCGA-EK-A2RJ-01 20 25260930 25260930 C G PYGB Missense_Mutation p.A374G 0.13 tolerated(0.14) possibly_damaging(0.657) TCGA-EK-A2RJ-01 20 33169373 33169373 C T PIGU Missense_Mutation p.V344M 0.17 tolerated(0.32) benign(0.118) TCGA-EK-A2RJ-01 20 33432535 33432535 C G GGT7 3'UTR 0.11 TCGA-EK-A2RJ-01 20 34330028 34330028 G C RBM39 5'Flank 0.20 TCGA-EK-A2RJ-01 20 36627619 36627619 C T TTI1 Missense_Mutation p.A922T 0.20 deleterious(0.01) benign(0) TCGA-EK-A2RJ-01 20 39803463 39803463 G C PLCG1 3'UTR 0.22 TCGA-EK-A2RJ-01 20 40043882 40043882 C T CHD6 Missense_Mutation p.E2295K 0.31 deleterious(0.01) benign(0.405) TCGA-EK-A2RJ-01 20 44571761 44571761 C G PCIF1 Missense_Mutation p.F233L 0.17 deleterious(0) probably_damaging(0.996) TCGA-EK-A2RJ-01 20 45923508 45923508 C G ZMYND8 Missense_Mutation p.E157Q 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-EK-A2RJ-01 20 52193406 52193406 C T ZNF217 Missense_Mutation p.E633K 0.15 tolerated(0.34) benign(0.063) TCGA-EK-A2RJ-01 20 62654202 62654202 C T PRPF6 Silent p.A580A 0.12 TCGA-EK-A2RJ-01 21 45092192 45092192 G C RRP1B Missense_Mutation p.E73Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RJ-01 21 46047689 46047689 G A KRTAP10-9 Missense_Mutation p.V201I 0.23 tolerated(0.25) unknown(0) TCGA-EK-A2RJ-01 22 21329099 21329099 C T AIFM3 Silent p.L238L 0.33 TCGA-EK-A2RJ-01 22 24129408 24129408 C T SMARCB1 Nonsense_Mutation p.Q18* 0.16 TCGA-EK-A2RJ-01 22 35804446 35804446 C T MCM5 Silent p.I214I 0.57 TCGA-EK-A2RJ-01 22 41318403 41318403 C G XPNPEP3 Silent p.L374L 0.38 TCGA-EK-A2RJ-01 22 50217320 50217320 C T BRD1 Missense_Mutation p.V216M 0.24 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RJ-01 22 50659792 50659792 G A TUBGCP6 Missense_Mutation p.S999L 0.24 tolerated(0.31) benign(0.007) TCGA-EK-A2RJ-01 22 50719908 50719908 C T PLXNB2 Silent p.E1181E 0.30 TCGA-EK-A2RJ-01 22 50719913 50719913 G A PLXNB2 Missense_Mutation p.R1180C 0.30 tolerated(0.12) probably_damaging(0.964) TCGA-EK-A2RJ-01 2 108489281 108489281 C A RGPD4 Missense_Mutation p.N1607K 0.20 tolerated_low_confidence(0.23) benign(0.045) TCGA-EK-A2RJ-01 2 109086905 109086905 G C GCC2 Missense_Mutation p.D374H 0.27 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RJ-01 2 11351824 11351824 T C ROCK2 Missense_Mutation p.K729R 0.23 tolerated(0.09) benign(0.046) TCGA-EK-A2RJ-01 2 11738894 11738894 G C GREB1 Missense_Mutation p.Q747H 0.16 tolerated(0.26) possibly_damaging(0.632) TCGA-EK-A2RJ-01 2 11913826 11913826 C T LPIN1 Missense_Mutation p.S275L 0.11 tolerated(0.13) benign(0.008) TCGA-EK-A2RJ-01 2 131522285 131522285 G C AMER3 3'UTR 0.22 TCGA-EK-A2RJ-01 2 135028071 135028071 C G MGAT5 Missense_Mutation p.S119C 0.33 tolerated(0.11) benign(0.391) TCGA-EK-A2RJ-01 2 171702015 171702015 G A GAD1 Splice_Site p.X251_splice 0.27 TCGA-EK-A2RJ-01 2 171850400 171850400 C A TLK1 Missense_Mutation p.D731Y 0.35 deleterious(0) probably_damaging(1) TCGA-EK-A2RJ-01 2 177016536 177016536 G C HOXD4 Missense_Mutation p.E59Q 0.22 tolerated(0.05) possibly_damaging(0.829) TCGA-EK-A2RJ-01 2 178482973 178482973 C G TTC30A Missense_Mutation p.E153Q 0.10 deleterious(0.03) benign(0.007) TCGA-EK-A2RJ-01 2 179698970 179698970 C G CCDC141 Missense_Mutation p.R1508T 0.17 deleterious(0.01) possibly_damaging(0.79) TCGA-EK-A2RJ-01 2 183584845 183584845 G A DNAJC10 Missense_Mutation p.D106N 0.35 tolerated(0.07) benign(0.317) TCGA-EK-A2RJ-01 2 187693431 187693431 A C ZSWIM2 Silent p.T394T 0.24 TCGA-EK-A2RJ-01 2 189929375 189929375 G A COL5A2 Nonsense_Mutation p.Q542* 0.29 TCGA-EK-A2RJ-01 2 204013810 204013810 C G NBEAL1 Missense_Mutation p.L1772V 0.21 deleterious(0.05) benign(0.011) TCGA-EK-A2RJ-01 2 207017199 207017199 C T NDUFS1 Missense_Mutation p.E47K 0.11 tolerated(0.39) benign(0.304) TCGA-EK-A2RJ-01 2 208841393 208841393 G C PLEKHM3 Missense_Mutation p.Q510E 0.20 deleterious(0) probably_damaging(0.993) TCGA-EK-A2RJ-01 2 21231652 21231652 C T APOB Silent p.L2696L 0.10 TCGA-EK-A2RJ-01 2 220087138 220087138 G A ATG9A Missense_Mutation p.S628L 0.40 tolerated(0.18) benign(0.055) TCGA-EK-A2RJ-01 2 220437117 220437117 C T INHA Silent p.L7L 0.18 TCGA-EK-A2RJ-01 2 238419253 238419253 G C MLPH Missense_Mutation p.K49N 0.12 deleterious(0) probably_damaging(0.98) TCGA-EK-A2RJ-01 2 238680788 238680788 C G LRRFIP1 Missense_Mutation p.S525C 0.33 deleterious(0.02) possibly_damaging(0.778) TCGA-EK-A2RJ-01 2 27429780 27429780 G A SLC5A6 Nonsense_Mutation p.R142* 0.12 TCGA-EK-A2RJ-01 2 27477446 27477446 G A SLC30A3 3'UTR 0.17 TCGA-EK-A2RJ-01 2 27870730 27870730 C T GPN1 Missense_Mutation p.S334F 0.15 deleterious(0) probably_damaging(0.914) TCGA-EK-A2RJ-01 2 28248247 28248247 G C BRE Missense_Mutation p.G152A 0.21 tolerated(0.5) benign(0.078) TCGA-EK-A2RJ-01 2 28616645 28616645 C G FOSL2 Missense_Mutation p.P20A 0.15 deleterious(0.01) possibly_damaging(0.824) TCGA-EK-A2RJ-01 2 29225420 29225420 G T FAM179A Missense_Mutation p.G149V 0.15 deleterious(0.05) probably_damaging(0.965) TCGA-EK-A2RJ-01 2 29225481 29225481 G C FAM179A Silent p.L169L 0.17 TCGA-EK-A2RJ-01 2 44396075 44396075 C T PPM1B 5'UTR 0.15 TCGA-EK-A2RJ-01 2 48040408 48040408 C G FBXO11 Missense_Mutation p.R731T 0.15 deleterious(0.03) possibly_damaging(0.705) TCGA-EK-A2RJ-01 2 54864866 54864866 G C SPTBN1 Missense_Mutation p.E1262Q 0.23 tolerated(0.3) benign(0.021) TCGA-EK-A2RJ-01 2 64859611 64859611 G A SERTAD2 3'UTR 0.25 TCGA-EK-A2RJ-01 2 64859795 64859795 C T SERTAD2 3'UTR 0.24 TCGA-EK-A2RJ-01 2 85576669 85576669 C T RETSAT Missense_Mutation p.A279T 0.15 tolerated(0.08) benign(0.133) TCGA-EK-A2RJ-01 2 85598618 85598618 G A ELMOD3 Silent p.K180K 0.21 TCGA-EK-A2RJ-01 2 85828196 85828196 C T TMEM150A Missense_Mutation p.E50K 0.42 tolerated(0.88) benign(0.002) TCGA-EK-A2RJ-01 2 88082441 88082441 C T RGPD2 Missense_Mutation p.E1368K 0.06 deleterious(0) benign(0.434) TCGA-EK-A2RJ-01 2 89065610 89065610 C T AC096579.1 5'Flank 0.18 TCGA-EK-A2RJ-01 2 9676906 9676906 G C ADAM17 Missense_Mutation p.F94L 0.18 deleterious(0.05) benign(0.026) TCGA-EK-A2RJ-01 2 9695722 9695722 G A ADAM17 Missense_Mutation p.L5F 0.10 tolerated_low_confidence(0.22) benign(0.094) TCGA-EK-A2RJ-01 3 108279559 108279559 C T KIAA1524 Silent p.L588L 0.36 TCGA-EK-A2RJ-01 3 120461311 120461311 G A RABL3 Missense_Mutation p.S15L 0.10 deleterious(0.02) possibly_damaging(0.825) TCGA-EK-A2RJ-01 3 122418794 122418794 C T PARP14 Nonsense_Mutation p.Q465* 0.15 TCGA-EK-A2RJ-01 3 126219628 126219628 C A UROC1 Missense_Mutation p.G412V 0.09 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RJ-01 3 133099751 133099751 G A TMEM108 Missense_Mutation p.G399E 0.14 tolerated_low_confidence(0.9) benign(0.025) TCGA-EK-A2RJ-01 3 147120596 147120596 G C ZIC4 Missense_Mutation p.Q47E 0.07 deleterious_low_confidence(0) benign(0.217) TCGA-EK-A2RJ-01 3 159711269 159711269 C G IL12A Missense_Mutation p.S137C 0.09 deleterious(0) possibly_damaging(0.905) TCGA-EK-A2RJ-01 3 171969126 171969126 G A FNDC3B Silent p.L195L 0.17 TCGA-EK-A2RJ-01 3 185329515 185329515 C G SENP2 Missense_Mutation p.Q267E 0.17 tolerated(0.44) benign(0.05) TCGA-EK-A2RJ-01 3 189713147 189713147 C G LEPREL1 Missense_Mutation p.E189Q 0.17 deleterious(0.02) benign(0.217) TCGA-EK-A2RJ-01 3 33638217 33638217 G C CLASP2 Missense_Mutation p.S646C 0.10 tolerated(0.07) possibly_damaging(0.867) TCGA-EK-A2RJ-01 3 369910 369910 G A CHL1 Silent p.S86S 0.23 TCGA-EK-A2RJ-01 3 38888491 38888491 G A SCN11A Silent p.T1690T 0.09 TCGA-EK-A2RJ-01 3 40553908 40553908 C T ZNF620 Missense_Mutation p.T56M 0.25 deleterious(0) benign(0.05) TCGA-EK-A2RJ-01 3 46063416 46063416 C G XCR1 Missense_Mutation p.E8D 0.14 tolerated(0.22) benign(0.018) TCGA-EK-A2RJ-01 3 46450874 46450874 C G CCRL2 3'UTR 0.16 TCGA-EK-A2RJ-01 3 47018170 47018170 C T CCDC12 Missense_Mutation p.R31Q 0.15 deleterious(0) benign(0.127) TCGA-EK-A2RJ-01 3 47917375 47917375 G C MAP4 Missense_Mutation p.Q708E 0.08 deleterious(0.04) benign(0.392) TCGA-EK-A2RJ-01 3 48461614 48461614 G C PLXNB1 Missense_Mutation p.P694R 0.33 tolerated(0.2) possibly_damaging(0.611) TCGA-EK-A2RJ-01 3 49372952 49372952 C T USP4 Missense_Mutation p.G60D 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-EK-A2RJ-01 3 49698244 49698244 C T BSN Missense_Mutation p.S2989F 0.09 unknown(0) TCGA-EK-A2RJ-01 3 50407782 50407782 C G CACNA2D2 Missense_Mutation p.E679Q 0.11 tolerated(0.14) probably_damaging(0.977) TCGA-EK-A2RJ-01 3 52240694 52240694 C A ALAS1 Silent p.L364L 0.08 TCGA-EK-A2RJ-01 3 52799977 52799977 C T NEK4 Missense_Mutation p.E198K 0.14 deleterious(0) probably_damaging(1) TCGA-EK-A2RJ-01 3 53920923 53920923 C T SELK Missense_Mutation p.R50K 0.30 tolerated(0.48) probably_damaging(0.982) TCGA-EK-A2RJ-01 4 106162847 106162847 C T TET2 Intron 0.30 TCGA-EK-A2RJ-01 4 113460799 113460799 C G C4orf21 Silent p.L2073L 0.20 TCGA-EK-A2RJ-01 4 122137568 122137568 A C TNIP3 Splice_Site p.X30_splice 0.19 TCGA-EK-A2RJ-01 4 140310549 140310549 G A NAA15 3'UTR 0.23 TCGA-EK-A2RJ-01 4 144380582 144380582 G C GAB1 Missense_Mutation p.E574Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RJ-01 4 156711018 156711018 C T GUCY1B3 Silent p.I150I 0.17 TCGA-EK-A2RJ-01 4 15709241 15709241 G C BST1 Missense_Mutation p.L141F 0.16 deleterious(0) probably_damaging(0.996) TCGA-EK-A2RJ-01 4 158091757 158091757 G A GLRB Silent p.K457K 0.22 TCGA-EK-A2RJ-01 4 159789970 159789970 G C FNIP2 Missense_Mutation p.E728Q 0.29 deleterious(0.01) probably_damaging(0.94) TCGA-EK-A2RJ-01 4 52861485 52861485 G C LRRC66 Nonsense_Mutation p.S568* 0.25 TCGA-EK-A2RJ-01 4 56277808 56277808 C T TMEM165 Missense_Mutation p.H79Y 0.36 tolerated(0.05) benign(0.033) TCGA-EK-A2RJ-01 4 57797419 57797419 C G REST Missense_Mutation p.P799A 0.42 tolerated_low_confidence(0.26) benign(0.001) TCGA-EK-A2RJ-01 4 62903458 62903458 G A LPHN3 Missense_Mutation p.E1133K 0.17 deleterious(0) possibly_damaging(0.624) TCGA-EK-A2RJ-01 4 6642467 6642467 G C MRFAP1 Intron 0.42 TCGA-EK-A2RJ-01 4 72433560 72433560 G C SLC4A4 Missense_Mutation p.E1079Q 0.14 deleterious_low_confidence(0.02) benign(0.029) TCGA-EK-A2RJ-01 4 76522182 76522182 G A CDKL2 Missense_Mutation p.S420F 0.11 deleterious(0.01) possibly_damaging(0.895) TCGA-EK-A2RJ-01 4 77288626 77288626 C T CCDC158 Missense_Mutation p.E551K 0.27 deleterious(0) benign(0.066) TCGA-EK-A2RJ-01 4 93225802 93225802 G C GRID2 5'UTR 0.19 TCGA-EK-A2RJ-01 5 121786950 121786950 C T SNCAIP Missense_Mutation p.S803F 0.32 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RJ-01 5 13829760 13829760 G A DNAH5 Silent p.F2101F 0.12 TCGA-EK-A2RJ-01 5 140183169 140183169 C T PCDHA3 Missense_Mutation p.S796L 0.29 tolerated_low_confidence(0.79) benign(0.001) TCGA-EK-A2RJ-01 5 1409223 1409223 G A SLC6A3 Silent p.F472F 0.20 TCGA-EK-A2RJ-01 5 14713030 14713030 C G ANKH Missense_Mutation p.E440Q 0.10 deleterious(0) probably_damaging(0.991) TCGA-EK-A2RJ-01 5 148746985 148746985 G T PCYOX1L Missense_Mutation p.V249F 0.21 deleterious(0) probably_damaging(1) TCGA-EK-A2RJ-01 5 151175052 151175052 A T G3BP1 Missense_Mutation p.E152V 0.11 tolerated(0.29) probably_damaging(0.994) TCGA-EK-A2RJ-01 5 153436990 153436990 G C MFAP3 3'UTR 0.71 TCGA-EK-A2RJ-01 5 168098381 168098381 C T SLIT3 Missense_Mutation p.D1317N 0.11 deleterious(0.01) possibly_damaging(0.51) TCGA-EK-A2RJ-01 5 17354209 17354209 T C CTD-2139B15.2 Intron 0.21 TCGA-EK-A2RJ-01 5 176894312 176894312 C G DBN1 Missense_Mutation p.D169H 0.20 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RJ-01 5 180657818 180657818 G C TRIM41 Missense_Mutation p.E296D 0.34 tolerated(0.13) possibly_damaging(0.746) TCGA-EK-A2RJ-01 5 23524509 23524509 C T PRDM9 Silent p.I339I 0.25 TCGA-EK-A2RJ-01 5 26885933 26885933 G A CDH9 Missense_Mutation p.R558C 0.16 deleterious(0) probably_damaging(0.963) TCGA-EK-A2RJ-01 5 31317953 31317953 G A CDH6 Missense_Mutation p.A602T 0.21 tolerated(0.2) probably_damaging(0.984) TCGA-EK-A2RJ-01 5 35646907 35646907 G A SPEF2 Missense_Mutation p.E242K 0.27 tolerated(0.08) possibly_damaging(0.448) TCGA-EK-A2RJ-01 5 43039952 43039952 C T ANXA2R Missense_Mutation p.G66E 0.13 tolerated(0.26) benign(0.071) TCGA-EK-A2RJ-01 6 105614566 105614566 G A POPDC3 Intron 0.22 TCGA-EK-A2RJ-01 6 107419825 107419825 C T BEND3 Missense_Mutation p.R57Q 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.495) TCGA-EK-A2RJ-01 6 108204293 108204293 C G SEC63 Missense_Mutation p.E578Q 0.25 tolerated(0.16) benign(0.045) TCGA-EK-A2RJ-01 6 130505720 130505720 C T SAMD3 Silent p.T144T 0.14 TCGA-EK-A2RJ-01 6 131917763 131917763 G C MED23 Silent p.L891L 0.14 TCGA-EK-A2RJ-01 6 144507888 144507888 G C STX11 Missense_Mutation p.E42Q 0.32 tolerated(0.16) benign(0.19) TCGA-EK-A2RJ-01 6 150346643 150346643 C T RAET1L 5'Flank 0.19 TCGA-EK-A2RJ-01 6 151286115 151286115 G A MTHFD1L Missense_Mutation p.G652D 0.33 deleterious(0.01) probably_damaging(0.975) TCGA-EK-A2RJ-01 6 152420363 152420363 G T ESR1 3'UTR 0.17 TCGA-EK-A2RJ-01 6 168273011 168273011 C T MLLT4 Nonsense_Mutation p.R178* 0.23 TCGA-EK-A2RJ-01 6 169051402 169051402 C G SMOC2 Missense_Mutation p.L328V 0.32 tolerated(0.12) possibly_damaging(0.891) TCGA-EK-A2RJ-01 6 24701842 24701842 G A ACOT13 Silent p.%3D 0.25 TCGA-EK-A2RJ-01 6 26156664 26156664 G T HIST1H1E Nonsense_Mutation p.E16* 0.18 TCGA-EK-A2RJ-01 6 26216662 26216662 G C HIST1H2BG Missense_Mutation p.I70M 0.05 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-EK-A2RJ-01 6 26251947 26251947 G C HIST1H2BH Missense_Mutation p.Q23H 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-EK-A2RJ-01 6 26252209 26252209 G A HIST1H2BH Missense_Mutation p.A111T 0.20 tolerated_low_confidence(0.06) benign(0.069) TCGA-EK-A2RJ-01 6 27368923 27368923 C A ZNF391 Missense_Mutation p.F258L 0.19 deleterious(0) benign(0.332) TCGA-EK-A2RJ-01 6 31544969 31544969 G A TNF Silent p.L119L 0.17 TCGA-EK-A2RJ-01 6 3227805 3227805 G A TUBB2B 5'UTR 0.10 TCGA-EK-A2RJ-01 6 32609786 32609786 G A HLA-DQA1 Silent p.V123V 0.15 TCGA-EK-A2RJ-01 6 33284082 33284082 G A ZBTB22 Silent p.S204S 0.34 TCGA-EK-A2RJ-01 6 33656045 33656045 G C ITPR3 Missense_Mutation p.Q2135H 0.11 deleterious(0) possibly_damaging(0.805) TCGA-EK-A2RJ-01 6 34213430 34213430 G C HMGA1 3'UTR 0.40 TCGA-EK-A2RJ-01 6 34214351 34214351 G A C6orf1 Silent p.L140L 0.15 TCGA-EK-A2RJ-01 6 39835301 39835301 C T DAAM2 Silent p.F148F 0.09 TCGA-EK-A2RJ-01 6 41038914 41038914 G C OARD1 Silent p.L47L 0.16 TCGA-EK-A2RJ-01 6 42834394 42834394 G A GLTSCR1L 3'UTR 0.19 TCGA-EK-A2RJ-01 6 43027092 43027092 G A MRPL2 Silent p.L10L 0.18 TCGA-EK-A2RJ-01 6 43474090 43474090 G A TJAP1 3'UTR 0.17 TCGA-EK-A2RJ-01 6 47846225 47846225 G C PTCHD4 Missense_Mutation p.F785L 0.11 deleterious(0) probably_damaging(0.966) TCGA-EK-A2RJ-01 6 52935903 52935903 G A FBXO9 Missense_Mutation p.D28N 0.18 deleterious(0.01) benign(0.086) TCGA-EK-A2RJ-01 6 55142241 55142241 C G HCRTR2 Missense_Mutation p.R276G 0.23 tolerated(0.41) benign(0.012) TCGA-EK-A2RJ-01 6 56434738 56434738 C G DST Missense_Mutation p.W1975C 0.10 probably_damaging(1) TCGA-EK-A2RJ-01 6 56472305 56472305 C T DST Intron 0.24 TCGA-EK-A2RJ-01 6 70851961 70851961 G T COL19A1 Missense_Mutation p.G522V 0.31 deleterious(0) probably_damaging(1) TCGA-EK-A2RJ-01 6 72975693 72975693 G A RIMS1 Silent p.R1113R 0.11 TCGA-EK-A2RJ-01 6 83075876 83075876 C T TPBG Missense_Mutation p.H400Y 0.12 deleterious(0) probably_damaging(0.99) TCGA-EK-A2RJ-01 6 88109152 88109152 G C C6orf164 Intron 0.15 TCGA-EK-A2RJ-01 6 90383177 90383177 C G MDN1 Missense_Mutation p.D4418H 0.33 benign(0.004) TCGA-EK-A2RJ-01 6 94068049 94068049 C T EPHA7 Missense_Mutation p.E305K 0.29 tolerated(0.09) possibly_damaging(0.583) TCGA-EK-A2RJ-01 6 96654135 96654135 C T FUT9 3'UTR 0.26 TCGA-EK-A2RJ-01 7 105254455 105254455 C T ATXN7L1 Missense_Mutation p.E776K 0.17 tolerated(0.18) benign(0.146) TCGA-EK-A2RJ-01 7 105305653 105305653 C T ATXN7L1 Silent p.V146V 0.16 TCGA-EK-A2RJ-01 7 107431506 107431506 G C SLC26A3 Missense_Mutation p.S186C 0.19 tolerated(0.09) benign(0.04) TCGA-EK-A2RJ-01 7 107431638 107431638 G A SLC26A3 Missense_Mutation p.S142L 0.10 tolerated(0.38) benign(0.307) TCGA-EK-A2RJ-01 7 11582675 11582675 G A THSD7A Missense_Mutation p.P508L 0.12 deleterious(0.04) possibly_damaging(0.796) TCGA-EK-A2RJ-01 7 119913785 119913785 C G KCND2 5'UTR 0.24 TCGA-EK-A2RJ-01 7 128415649 128415649 G A OPN1SW Missense_Mutation p.R66W 0.55 deleterious(0.02) benign(0.034) TCGA-EK-A2RJ-01 7 138524885 138524885 C G KIAA1549 Missense_Mutation p.R1864T 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-EK-A2RJ-01 7 139257806 139257806 G A HIPK2 Missense_Mutation p.S1155L 0.16 deleterious(0) probably_damaging(0.99) TCGA-EK-A2RJ-01 7 139297998 139297998 G C HIPK2 Missense_Mutation p.Q688E 0.05 deleterious(0) benign(0.298) TCGA-EK-A2RJ-01 7 143090861 143090861 G C EPHA1 Missense_Mutation p.R867G 0.49 deleterious(0) benign(0.033) TCGA-EK-A2RJ-01 7 151802441 151802441 C T GALNT11 Missense_Mutation p.A233V 0.22 deleterious(0) probably_damaging(1) TCGA-EK-A2RJ-01 7 157046683 157046683 T A UBE3C Silent p.P910P 0.12 TCGA-EK-A2RJ-01 7 17979955 17979955 C T SNX13 5'UTR 0.30 TCGA-EK-A2RJ-01 7 21552728 21552728 C T SP4 3'UTR 0.15 TCGA-EK-A2RJ-01 7 21826239 21826239 C T DNAH11 Intron 0.13 TCGA-EK-A2RJ-01 7 23352023 23352023 C T IGF2BP3 Silent p.Q566Q 0.07 TCGA-EK-A2RJ-01 7 33313525 33313525 C G BBS9 Missense_Mutation p.Q325E 0.29 deleterious(0.02) probably_damaging(0.915) TCGA-EK-A2RJ-01 7 43917456 43917456 G C URGCP Missense_Mutation p.R536G 0.17 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RJ-01 7 43927446 43927446 G A URGCP Intron 0.10 TCGA-EK-A2RJ-01 7 44259817 44259817 G A CAMK2B Silent p.A615A 0.08 TCGA-EK-A2RJ-01 7 5399153 5399153 G A TNRC18 Missense_Mutation p.A1570V 0.13 benign(0.297) TCGA-EK-A2RJ-01 7 6217451 6217451 C T CYTH3 Intron 0.11 TCGA-EK-A2RJ-01 7 77789588 77789588 C G MAGI2 Missense_Mutation p.E867Q 0.36 tolerated(0.08) benign(0.021) TCGA-EK-A2RJ-01 7 79846962 79846962 G A GNAI1 3'UTR 0.14 TCGA-EK-A2RJ-01 7 83590688 83590688 C T SEMA3A Silent p.%3D 0.12 TCGA-EK-A2RJ-01 7 87041264 87041264 G A ABCB4 Nonsense_Mutation p.R957* 0.29 TCGA-EK-A2RJ-01 8 103358560 103358560 G C UBR5 Missense_Mutation p.L214V 0.29 deleterious(0) probably_damaging(0.963) TCGA-EK-A2RJ-01 8 119634061 119634061 C G SAMD12 5'UTR 0.22 TCGA-EK-A2RJ-01 8 126114598 126114598 C T NSMCE2 Missense_Mutation p.S9L 0.07 deleterious_low_confidence(0.02) benign(0.307) TCGA-EK-A2RJ-01 8 131949350 131949350 C T ADCY8 Missense_Mutation p.E484K 0.40 deleterious(0) probably_damaging(0.959) TCGA-EK-A2RJ-01 8 141321456 141321456 G A TRAPPC9 Nonsense_Mutation p.Q603* 0.25 TCGA-EK-A2RJ-01 8 144807457 144807457 G A FAM83H 3'UTR 0.19 TCGA-EK-A2RJ-01 8 144996801 144996801 C T PLEC Silent p.Q2569Q 0.25 TCGA-EK-A2RJ-01 8 145624722 145624722 C G CPSF1 Missense_Mutation p.E446Q 0.18 deleterious(0.04) possibly_damaging(0.893) TCGA-EK-A2RJ-01 8 16962944 16962944 G C MICU3 Missense_Mutation p.E370Q 0.29 deleterious(0) probably_damaging(0.987) TCGA-EK-A2RJ-01 8 19816872 19816872 G C LPL Missense_Mutation p.E374Q 0.19 tolerated(0.38) benign(0.052) TCGA-EK-A2RJ-01 8 21563461 21563461 G C GFRA2 Missense_Mutation p.S296C 0.22 deleterious(0) probably_damaging(0.996) TCGA-EK-A2RJ-01 8 21824455 21824455 G C XPO7 Missense_Mutation p.E36Q 0.15 tolerated(0.44) benign(0.219) TCGA-EK-A2RJ-01 8 28574932 28574932 C T EXTL3 Silent p.F452F 0.25 TCGA-EK-A2RJ-01 8 29924375 29924375 G A TMEM66 Nonsense_Mutation p.Q254* 0.36 TCGA-EK-A2RJ-01 8 67796113 67796113 C T MCMDC2 Silent p.Y319Y 0.47 TCGA-EK-A2RJ-01 8 94935385 94935385 G C PDP1 Missense_Mutation p.K391N 0.20 tolerated(0.2) benign(0.038) TCGA-EK-A2RJ-01 8 95885647 95885647 G A INTS8 Missense_Mutation p.G860E 0.16 deleterious(0.01) probably_damaging(1) TCGA-EK-A2RJ-01 9 101915686 101915686 C T TGFBR1 3'UTR 0.19 TCGA-EK-A2RJ-01 9 108510422 108510422 C G TMEM38B Nonsense_Mutation p.S204* 0.16 TCGA-EK-A2RJ-01 9 115013283 115013283 C G PTBP3 Missense_Mutation p.R277T 0.26 deleterious(0) probably_damaging(0.914) TCGA-EK-A2RJ-01 9 116812420 116812420 C T ZNF618 Silent p.L853L 0.24 TCGA-EK-A2RJ-01 9 125273356 125273356 C G OR1J2 Missense_Mutation p.I92M 0.18 deleterious_low_confidence(0.01) benign(0.373) TCGA-EK-A2RJ-01 9 131362359 131362362 GATG AAT SPTAN1 Frame_Shift_Del p.D1182Nfs*16 0.16 TCGA-EK-A2RJ-01 9 132631176 132631176 C T USP20 Missense_Mutation p.R391C 0.14 deleterious(0.01) possibly_damaging(0.846) TCGA-EK-A2RJ-01 9 139371076 139371076 G A SEC16A Missense_Mutation p.S331F 0.21 tolerated(0.1) benign(0.004) TCGA-EK-A2RJ-01 9 139840549 139840549 G A C8G Missense_Mutation p.R120Q 0.16 tolerated(0.13) benign(0.405) TCGA-EK-A2RJ-01 9 140508900 140508900 C T ARRDC1 Silent p.S256S 0.15 TCGA-EK-A2RJ-01 9 140954116 140954116 G C CACNA1B Missense_Mutation p.R1532T 0.21 deleterious(0) probably_damaging(0.977) TCGA-EK-A2RJ-01 9 16436817 16436817 G A BNC2 Missense_Mutation p.H459Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RJ-01 9 2718192 2718192 C T KCNV2 Silent p.F151F 0.17 TCGA-EK-A2RJ-01 9 38397713 38397713 A G ALDH1B1 3'UTR 0.33 TCGA-EK-A2RJ-01 9 7174698 7174698 C G KDM4C Missense_Mutation p.S1047C 0.30 tolerated(0.08) probably_damaging(0.987) TCGA-EK-A2RJ-01 9 7175269 7175269 C G KDM4C 3'UTR 0.16 TCGA-EK-A2RJ-01 9 84607470 84607470 C T SPATA31D1 Silent p.L695L 0.14 TCGA-EK-A2RJ-01 9 86571417 86571417 C T C9orf64 5'UTR 0.20 TCGA-EK-A2RJ-01 9 99250501 99250501 G A HABP4 Missense_Mutation p.G377E 0.14 deleterious(0) probably_damaging(0.991) TCGA-EK-A2RJ-01 X 108718759 108718759 G C GUCY2F Missense_Mutation p.S136W 0.14 deleterious(0.04) benign(0.008) TCGA-EK-A2RJ-01 X 114346833 114346833 G C LRCH2 3'UTR 0.30 TCGA-EK-A2RJ-01 X 118739705 118739705 G A NKRF 5'UTR 0.17 TCGA-EK-A2RJ-01 X 123513767 123513767 G C TENM1 3'UTR 0.11 TCGA-EK-A2RJ-01 X 12736237 12736237 G A FRMPD4 Missense_Mutation p.E1098K 0.25 tolerated_low_confidence(0.13) benign(0.066) TCGA-EK-A2RJ-01 X 134556133 134556133 C G LINC00086 RNA 0.20 TCGA-EK-A2RJ-01 X 135730506 135730506 C G CD40LG Missense_Mutation p.I33M 0.10 deleterious(0) probably_damaging(0.926) TCGA-EK-A2RJ-01 X 138698554 138698554 G A MCF2 Nonsense_Mutation p.Q420* 0.12 TCGA-EK-A2RJ-01 X 140967211 140967211 C T MAGEC3 Missense_Mutation p.A170V 0.24 tolerated(0.19) benign(0.1) TCGA-EK-A2RJ-01 X 1460693 1460693 C A IL3RA Missense_Mutation p.A12D 0.08 deleterious(0.01) benign(0.002) TCGA-EK-A2RJ-01 X 147026442 147026442 G A FMR1 Missense_Mutation p.E509K 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-EK-A2RJ-01 X 1471051 1471051 C T IL3RA Silent p.F119F 0.07 TCGA-EK-A2RJ-01 X 1471297 1471297 C T IL3RA Nonsense_Mutation p.R172* 0.09 TCGA-EK-A2RJ-01 X 1508459 1508459 G C SLC25A6 Missense_Mutation p.F91L 0.08 deleterious(0.03) possibly_damaging(0.455) TCGA-EK-A2RJ-01 X 152846675 152846675 G C ATP2B3 3'UTR 0.21 TCGA-EK-A2RJ-01 X 152846676 152846676 C T ATP2B3 3'UTR 0.22 TCGA-EK-A2RJ-01 X 153599551 153599551 G C FLNA Silent p.V21V 0.41 TCGA-EK-A2RJ-01 X 153609278 153609278 G A EMD Silent p.Q162Q 0.10 TCGA-EK-A2RJ-01 X 153716084 153716084 A G SLC10A3 Missense_Mutation p.V399A 0.13 tolerated(0.07) probably_damaging(0.99) TCGA-EK-A2RJ-01 X 154066021 154066021 G C F8 Missense_Mutation p.Q2303E 0.24 deleterious(0.02) benign(0.082) TCGA-EK-A2RJ-01 X 18189170 18189170 C T BEND2 Silent p.L712L 0.11 TCGA-EK-A2RJ-01 X 22117121 22117121 C T PHEX Intron 0.15 TCGA-EK-A2RJ-01 X 24580446 24580446 G A PCYT1B Silent p.I358I 0.09 TCGA-EK-A2RJ-01 X 30254899 30254899 G A MAGEB3 Missense_Mutation p.M286I 0.13 deleterious(0.01) possibly_damaging(0.517) TCGA-EK-A2RJ-01 X 32382743 32382743 C T DMD Missense_Mutation p.E1704K 0.11 possibly_damaging(0.486) TCGA-EK-A2RJ-01 X 41209024 41209024 C T DDX3X 3'UTR 0.26 TCGA-EK-A2RJ-01 X 47516583 47516583 C A UXT Nonsense_Mutation p.E131* 0.11 TCGA-EK-A2RJ-01 X 47516607 47516607 C G UXT Missense_Mutation p.D123H 0.09 tolerated(0.06) benign(0.052) TCGA-EK-A2RJ-01 X 49071932 49071932 G A CACNA1F Missense_Mutation p.S1114L 0.20 deleterious(0) benign(0.364) TCGA-EK-A2RJ-01 X 49143300 49143300 C G PPP1R3F Silent p.L716L 0.17 TCGA-EK-A2RJ-01 X 50336291 50336291 C T SHROOM4 3'UTR 0.13 TCGA-EK-A2RJ-01 X 53223533 53223533 C T KDM5C Missense_Mutation p.E1276K 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-EK-A2RJ-01 X 53431949 53431949 G C SMC1A Missense_Mutation p.L731V 0.09 tolerated(0.47) benign(0.063) TCGA-EK-A2RJ-01 X 54022194 54022194 C T PHF8 Missense_Mutation p.E455K 0.10 deleterious(0.01) benign(0.278) TCGA-EK-A2RJ-01 X 64749585 64749585 G C LAS1L Missense_Mutation p.Q230E 0.06 tolerated(0.26) benign(0.002) TCGA-EK-A2RJ-01 X 70472920 70472920 G T ZMYM3 Silent p.T62T 0.22 TCGA-EK-A2RJ-01 X 70787861 70787861 G C OGT Missense_Mutation p.R954P 0.20 deleterious(0) probably_damaging(0.988) TCGA-EK-A2RJ-01 X 71521706 71521706 G A CITED1 Missense_Mutation p.S176L 0.11 tolerated(0.15) probably_damaging(0.992) TCGA-EK-A2RJ-01 X 71522705 71522705 C T CITED1 Silent p.S31S 0.19 TCGA-EK-A2RJ-01 X 7267976 7267976 G A STS Missense_Mutation p.V476M 0.18 deleterious(0.01) benign(0.284) TCGA-EK-A2RJ-01 X 72901147 72901147 G C CHIC1 3'UTR 0.09 TCGA-EK-A2RJ-01 X 74273262 74273262 C G ABCB7 Missense_Mutation p.K735N 0.09 deleterious(0.02) benign(0.429) TCGA-EK-A2RJ-01 X 77359815 77359815 C G PGK1 5'UTR 0.21 TCGA-EK-A2RJ-01 X 79946590 79946590 G A BRWD3 Silent p.L1188L 0.12 TCGA-EK-A2RJ-01 X 79980505 79980505 G A BRWD3 Missense_Mutation p.S483L 0.13 deleterious(0) probably_damaging(0.996) TCGA-EK-A2RJ-01 X 9685266 9685266 G C TBL1X 3'UTR 0.22 TCGA-EK-A2RK-01 10 3180157 3180157 G A PITRM1 3'UTR 0.64 TCGA-EK-A2RK-01 10 50375960 50375960 C T C10orf128 Missense_Mutation p.E31K 0.67 deleterious(0.02) probably_damaging(0.981) TCGA-EK-A2RK-01 10 89692835 89692835 G C PTEN Missense_Mutation p.D107H 0.66 deleterious(0) possibly_damaging(0.596) TCGA-EK-A2RK-01 10 89717729 89717729 G A PTEN Missense_Mutation p.D252N 0.64 deleterious(0) probably_damaging(0.955) TCGA-EK-A2RK-01 10 89720783 89720783 G A PTEN Missense_Mutation p.D312N 0.41 tolerated(0.15) possibly_damaging(0.805) TCGA-EK-A2RK-01 10 90733069 90733069 G C ACTA2 Intron 0.56 TCGA-EK-A2RK-01 11 101818816 101818816 C A KIAA1377 Missense_Mutation p.S150Y 0.67 deleterious(0) possibly_damaging(0.767) TCGA-EK-A2RK-01 11 1095260 1095260 C G MUC2 Missense_Mutation p.S2027W 0.65 unknown(0) TCGA-EK-A2RK-01 11 1261581 1261581 G A MUC5B Missense_Mutation p.A1316T 0.46 unknown(0) TCGA-EK-A2RK-01 11 1580137 1580137 C T DUSP8 Silent p.Q173Q 0.58 TCGA-EK-A2RK-01 11 1580215 1580215 C T DUSP8 Missense_Mutation p.M147I 0.65 tolerated(0.32) benign(0.002) TCGA-EK-A2RK-01 11 1768921 1768921 G A RP11-295K3.1 Silent p.F371F 0.79 TCGA-EK-A2RK-01 11 56020507 56020507 G A OR5T3 Missense_Mutation p.V278M 0.64 deleterious(0.02) probably_damaging(0.993) TCGA-EK-A2RK-01 11 60786810 60786810 C G CD6 3'UTR 0.76 TCGA-EK-A2RK-01 11 63403049 63403049 A G ATL3 Missense_Mutation p.I331T 0.72 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RK-01 11 73748647 73748647 G A C2CD3 Silent p.I1919I 0.66 TCGA-EK-A2RK-01 11 74329661 74329661 T C POLD3 Missense_Mutation p.S158P 0.25 tolerated(0.25) benign(0.016) TCGA-EK-A2RK-01 12 112585930 112585930 C G TRAFD1 Missense_Mutation p.S327C 0.56 deleterious(0) probably_damaging(0.957) TCGA-EK-A2RK-01 12 123682868 123682868 C G MPHOSPH9 Missense_Mutation p.D499H 0.43 deleterious(0) possibly_damaging(0.805) TCGA-EK-A2RK-01 12 130882193 130882193 C T RIMBP2 3'UTR 0.63 TCGA-EK-A2RK-01 12 1741900 1741900 G A WNT5B Missense_Mutation p.G53R 0.52 deleterious(0) probably_damaging(0.94) TCGA-EK-A2RK-01 12 49426469 49426469 G A KMT2D Nonsense_Mutation p.Q4007* 0.78 TCGA-EK-A2RK-01 12 52913666 52913666 C T KRT5 Missense_Mutation p.G139S 0.64 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RK-01 12 53806507 53806507 G C SP1 3'Flank 0.63 TCGA-EK-A2RK-01 12 69663861 69663861 C T CPSF6 3'UTR 0.50 TCGA-EK-A2RK-01 12 7868017 7868017 T G DPPA3 Silent p.V107V 0.63 TCGA-EK-A2RK-01 12 7868018 7868018 C T DPPA3 Missense_Mutation p.R108C 0.63 tolerated(0.06) possibly_damaging(0.542) TCGA-EK-A2RK-01 12 8249783 8249783 G A NECAP1 3'UTR 0.62 TCGA-EK-A2RK-01 12 91502433 91502433 T - LUM Frame_Shift_Del p.R110Efs*6 0.36 TCGA-EK-A2RK-01 12 93968591 93968591 C T SOCS2 Missense_Mutation p.S78L 0.86 deleterious(0.02) possibly_damaging(0.792) TCGA-EK-A2RK-01 13 28498509 28498509 C T PDX1 Missense_Mutation p.R175C 0.62 deleterious(0) probably_damaging(1) TCGA-EK-A2RK-01 13 46701712 46701712 A T LCP1 3'UTR 0.08 TCGA-EK-A2RK-01 14 102802038 102802038 C T ZNF839 Missense_Mutation p.H508Y 0.29 tolerated(0.14) probably_damaging(0.982) TCGA-EK-A2RK-01 14 104224057 104224057 G C PPP1R13B Nonsense_Mutation p.S129* 0.38 TCGA-EK-A2RK-01 14 23624564 23624564 C T SLC7A8 Intron 0.40 TCGA-EK-A2RK-01 14 25044601 25044601 G A CTSG Missense_Mutation p.R25W 0.39 deleterious(0.04) probably_damaging(0.927) TCGA-EK-A2RK-01 14 25101087 25101087 C T GZMB Missense_Mutation p.E193K 0.37 tolerated(1) benign(0) TCGA-EK-A2RK-01 14 57674947 57674947 G A EXOC5 3'UTR 0.44 TCGA-EK-A2RK-01 14 57675407 57675407 G C EXOC5 Missense_Mutation p.L683V 0.46 deleterious(0) possibly_damaging(0.893) TCGA-EK-A2RK-01 14 60212537 60212537 C T RTN1 Missense_Mutation p.E302K 0.31 deleterious(0.02) possibly_damaging(0.507) TCGA-EK-A2RK-01 14 64468776 64468776 G C SYNE2 Missense_Mutation p.D1255H 0.44 probably_damaging(0.986) TCGA-EK-A2RK-01 14 65242109 65242109 C G SPTB Missense_Mutation p.E1526Q 0.54 deleterious(0) probably_damaging(0.978) TCGA-EK-A2RK-01 14 73963365 73963365 C T HEATR4 Missense_Mutation p.M855I 0.51 deleterious(0.02) probably_damaging(0.953) TCGA-EK-A2RK-01 14 74409178 74409178 C A FAM161B Missense_Mutation p.R452I 0.40 deleterious(0.02) benign(0.138) TCGA-EK-A2RK-01 14 95030000 95030000 C T SERPINA4 Missense_Mutation p.R61C 0.45 tolerated(0.1) benign(0.057) TCGA-EK-A2RK-01 15 41991294 41991294 G A MGA Missense_Mutation p.E709K 0.71 deleterious(0.04) benign(0.184) TCGA-EK-A2RK-01 15 59373346 59373346 C G RNF111 Missense_Mutation p.I720M 0.62 deleterious(0.04) benign(0.116) TCGA-EK-A2RK-01 15 72073244 72073244 G A THSD4 3'UTR 1.00 TCGA-EK-A2RK-01 15 77906551 77906551 G A LINGO1 Silent p.I566I 0.66 TCGA-EK-A2RK-01 15 78471012 78471012 C T ACSBG1 Missense_Mutation p.G549D 0.76 deleterious(0) probably_damaging(1) TCGA-EK-A2RK-01 15 90802006 90802006 C G TTLL13 Nonsense_Mutation p.S400* 0.66 TCGA-EK-A2RK-01 16 109765 109765 G A RHBDF1 Silent p.I594I 0.34 TCGA-EK-A2RK-01 16 11966653 11966653 G A GSPT1 3'UTR 0.18 TCGA-EK-A2RK-01 16 27556663 27556663 G A GTF3C1 Missense_Mutation p.R135C 0.45 tolerated(0.11) benign(0.007) TCGA-EK-A2RK-01 16 30077106 30077106 G C ALDOA Intron 0.32 TCGA-EK-A2RK-01 16 30768459 30768459 G C PHKG2 3'UTR 0.45 TCGA-EK-A2RK-01 16 30768869 30768869 G A C16orf93 Silent p.L308L 0.44 TCGA-EK-A2RK-01 16 31002676 31002676 G A STX1B 3'UTR 0.30 TCGA-EK-A2RK-01 16 31501411 31501411 C G C16orf58 3'UTR 0.31 TCGA-EK-A2RK-01 16 4386876 4386876 C T GLIS2 Missense_Mutation p.S309L 0.36 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RK-01 16 4386904 4386904 C T GLIS2 Silent p.G318G 0.38 TCGA-EK-A2RK-01 16 4387480 4387480 C T GLIS2 Silent p.V510V 0.29 TCGA-EK-A2RK-01 16 4745112 4745112 G A NUDT16L1 Missense_Mutation p.E190K 0.37 tolerated(0.4) possibly_damaging(0.449) TCGA-EK-A2RK-01 16 4745190 4745190 G C NUDT16L1 3'UTR 0.32 TCGA-EK-A2RK-01 16 49672168 49672168 G C ZNF423 Missense_Mutation p.H299D 0.51 deleterious(0.02) possibly_damaging(0.544) TCGA-EK-A2RK-01 16 67683738 67683738 C T RLTPR Missense_Mutation p.S650F 0.46 deleterious(0) possibly_damaging(0.885) TCGA-EK-A2RK-01 16 68248234 68248234 C G NFATC3 Intron 0.33 TCGA-EK-A2RK-01 16 68265116 68265116 C T ESRP2 Missense_Mutation p.R559H 0.45 tolerated(0.08) possibly_damaging(0.787) TCGA-EK-A2RK-01 16 72818636 72818636 G A ZFHX3 3'UTR 0.46 TCGA-EK-A2RK-01 16 84353120 84353120 G A WFDC1 Missense_Mutation p.D169N 0.42 tolerated(0.52) probably_damaging(0.996) TCGA-EK-A2RK-01 17 12666834 12666834 C T MYOCD Missense_Mutation p.P945L 0.50 deleterious(0.04) probably_damaging(1) TCGA-EK-A2RK-01 17 26969347 26969347 G C KIAA0100 Missense_Mutation p.I174M 0.61 tolerated(0.1) benign(0.153) TCGA-EK-A2RK-01 17 26969920 26969920 C G KIAA0100 Missense_Mutation p.R161T 0.29 tolerated(0.7) benign(0.004) TCGA-EK-A2RK-01 17 26970223 26970223 C T KIAA0100 Missense_Mutation p.E119K 0.62 tolerated(1) benign(0.024) TCGA-EK-A2RK-01 17 26970293 26970293 G A KIAA0100 Silent p.I95I 0.67 TCGA-EK-A2RK-01 17 29283385 29283385 C T ADAP2 Missense_Mutation p.R337W 0.50 deleterious(0) probably_damaging(1) TCGA-EK-A2RK-01 17 33318059 33318059 G A LIG3 Missense_Mutation p.D323N 0.62 tolerated(0.19) benign(0.272) TCGA-EK-A2RK-01 17 36099473 36099473 G C HNF1B Missense_Mutation p.L168V 0.58 deleterious(0) probably_damaging(0.995) TCGA-EK-A2RK-01 17 37499487 37499487 G C FBXL20 Nonsense_Mutation p.S17* 0.71 TCGA-EK-A2RK-01 17 39535335 39535335 G A KRT34 Nonsense_Mutation p.Q366* 0.66 TCGA-EK-A2RK-01 17 42949823 42949823 C T EFTUD2 Missense_Mutation p.D329N 0.73 tolerated(0.22) benign(0.014) TCGA-EK-A2RK-01 17 45760712 45760712 A G KPNB1 3'UTR 0.21 TCGA-EK-A2RK-01 17 48211892 48211892 G C PPP1R9B 3'UTR 0.69 TCGA-EK-A2RK-01 17 48211941 48211941 G C PPP1R9B 3'UTR 0.75 TCGA-EK-A2RK-01 17 4856159 4856159 G A ENO3 Missense_Mutation p.G52E 0.60 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-EK-A2RK-01 17 4856627 4856627 G A ENO3 Missense_Mutation p.E101K 0.68 tolerated_low_confidence(0.18) benign(0.323) TCGA-EK-A2RK-01 17 4857069 4857069 G A ENO3 Missense_Mutation p.E125K 0.69 tolerated_low_confidence(0.19) benign(0.024) TCGA-EK-A2RK-01 17 4857102 4857102 G A ENO3 Missense_Mutation p.D136N 0.73 tolerated_low_confidence(0.12) benign(0.004) TCGA-EK-A2RK-01 17 58156276 58156276 C G HEATR6 5'UTR 0.62 TCGA-EK-A2RK-01 17 78055562 78055562 G C CCDC40 Missense_Mutation p.E594Q 0.79 deleterious(0.01) possibly_damaging(0.881) TCGA-EK-A2RK-01 17 79211199 79211199 C T ENTHD2 Missense_Mutation p.E37K 0.47 deleterious(0) probably_damaging(0.973) TCGA-EK-A2RK-01 17 7950658 7950658 G C ALOX15B Missense_Mutation p.E514Q 0.64 deleterious(0) probably_damaging(0.979) TCGA-EK-A2RK-01 17 80008563 80008563 C T RFNG Missense_Mutation p.D132N 0.64 deleterious(0.03) probably_damaging(0.997) TCGA-EK-A2RK-01 18 21723170 21723170 C G CABYR Nonsense_Mutation p.S31* 0.38 TCGA-EK-A2RK-01 18 2616517 2616517 G C NDC80 Missense_Mutation p.E625Q 0.46 tolerated(0.22) benign(0.046) TCGA-EK-A2RK-01 18 30257279 30257279 C G KLHL14 Missense_Mutation p.D535H 0.32 deleterious(0) probably_damaging(0.99) TCGA-EK-A2RK-01 18 56247685 56247685 G A ALPK2 Missense_Mutation p.S108L 0.43 deleterious(0.04) benign(0.012) TCGA-EK-A2RK-01 18 59974019 59974019 G A KIAA1468 3'UTR 0.28 TCGA-EK-A2RK-01 19 1005526 1005526 G A GRIN3B Missense_Mutation p.E676K 0.36 deleterious(0) possibly_damaging(0.515) TCGA-EK-A2RK-01 19 14165745 14165745 C T PALM3 Missense_Mutation p.A232T 0.42 deleterious(0.05) possibly_damaging(0.888) TCGA-EK-A2RK-01 19 15291846 15291846 C T NOTCH3 Missense_Mutation p.G974R 0.24 deleterious(0.03) probably_damaging(1) TCGA-EK-A2RK-01 19 16631642 16631642 C T CHERP Silent p.R732R 0.36 TCGA-EK-A2RK-01 19 2877608 2877608 C G ZNF556 Missense_Mutation p.L218V 0.41 deleterious(0.01) probably_damaging(0.988) TCGA-EK-A2RK-01 19 33490562 33490562 G C RHPN2 Silent p.L385L 0.17 TCGA-EK-A2RK-01 19 41245482 41245482 C T ITPKC 3'UTR 0.41 TCGA-EK-A2RK-01 19 42351527 42351527 C T DMRTC2 Missense_Mutation p.H11Y 0.26 tolerated(0.16) benign(0.332) TCGA-EK-A2RK-01 19 42510919 42510919 G C GRIK5 Missense_Mutation p.L639V 0.44 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RK-01 19 46214746 46214746 C T FBXO46 3'UTR 0.39 TCGA-EK-A2RK-01 19 52448073 52448073 G A ZNF613 Missense_Mutation p.E313K 0.43 deleterious(0) possibly_damaging(0.902) TCGA-EK-A2RK-01 19 53282112 53282112 C T ZNF600 5'UTR 0.35 TCGA-EK-A2RK-01 19 54972830 54972830 C T LENG8 3'UTR 0.40 TCGA-EK-A2RK-01 19 55224638 55224638 C T LILRP2 RNA 0.38 TCGA-EK-A2RK-01 19 55713638 55713638 G A PTPRH Silent p.I313I 0.34 TCGA-EK-A2RK-01 19 55716908 55716908 G A PTPRH Silent p.I135I 0.06 TCGA-EK-A2RK-01 19 56220299 56220299 C T NLRP9 Silent p.K985K 0.31 TCGA-EK-A2RK-01 19 58850077 58850077 G C ZSCAN22 Missense_Mutation p.Q287H 0.30 deleterious(0) benign(0.037) TCGA-EK-A2RK-01 19 7709550 7709550 G A STXBP2 Missense_Mutation p.M386I 0.38 deleterious(0.04) probably_damaging(0.919) TCGA-EK-A2RK-01 19 8182454 8182454 C G FBN3 Silent p.L1119L 0.40 TCGA-EK-A2RK-01 19 9225957 9225957 C G OR7G1 Silent p.L161L 0.26 TCGA-EK-A2RK-01 1 109648620 109648620 C T C1orf194 3'UTR 0.31 TCGA-EK-A2RK-01 1 109870156 109870156 G A SORT1 Missense_Mutation p.S480L 0.51 deleterious(0) probably_damaging(0.968) TCGA-EK-A2RK-01 1 110125079 110125079 G A GNAI3 Missense_Mutation p.R161K 0.30 deleterious(0) probably_damaging(0.98) TCGA-EK-A2RK-01 1 110256088 110256088 G A GSTM5 Intron 0.06 TCGA-EK-A2RK-01 1 1111181 1111181 G C TTLL10 Intron 0.42 TCGA-EK-A2RK-01 1 11181396 11181396 C T MTOR Silent p.L2280L 0.30 TCGA-EK-A2RK-01 1 148252786 148252786 C G NBPF20 Missense_Mutation p.K4522N 0.28 benign(0.299) TCGA-EK-A2RK-01 1 149291289 149291289 C A RP11-403I13.8 RNA 0.23 TCGA-EK-A2RK-01 1 152636743 152636743 C G LCE2D Missense_Mutation p.S54R 0.30 tolerated_low_confidence(0.15) unknown(0) TCGA-EK-A2RK-01 1 154560627 154560627 C G ADAR Missense_Mutation p.G998A 0.34 deleterious(0) probably_damaging(1) TCGA-EK-A2RK-01 1 156814526 156814526 G A INSRR Silent p.Y849Y 0.26 TCGA-EK-A2RK-01 1 158047909 158047909 C T KIRREL Missense_Mutation p.R111W 0.36 deleterious(0.01) probably_damaging(0.948) TCGA-EK-A2RK-01 1 159021543 159021543 G A IFI16 Silent p.V524V 0.38 TCGA-EK-A2RK-01 1 159021552 159021552 G A IFI16 Silent p.L527L 0.42 TCGA-EK-A2RK-01 1 161197766 161197766 G A TOMM40L Silent p.L157L 0.38 TCGA-EK-A2RK-01 1 162773227 162773227 T G HSD17B7 Missense_Mutation p.Y217D 0.39 deleterious(0) probably_damaging(0.934) TCGA-EK-A2RK-01 1 16344400 16344400 G C HSPB7 Missense_Mutation p.S20C 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.536) TCGA-EK-A2RK-01 1 16893745 16893745 G A NBPF1 Missense_Mutation p.S923L 0.03 tolerated(0.26) benign(0.004) TCGA-EK-A2RK-01 1 169292499 169292499 G C NME7 Missense_Mutation p.T45S 0.41 tolerated(0.4) benign(0.071) TCGA-EK-A2RK-01 1 1717440 1717440 G C GNB1 3'UTR 0.38 TCGA-EK-A2RK-01 1 1718380 1718380 G A GNB1 3'UTR 0.28 TCGA-EK-A2RK-01 1 179043348 179043348 G C FAM20B 3'UTR 0.42 TCGA-EK-A2RK-01 1 201282404 201282404 C T PKP1 Silent p.G139G 0.34 TCGA-EK-A2RK-01 1 204197977 204197977 C G PLEKHA6 Missense_Mutation p.D922H 0.37 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RK-01 1 22446190 22446190 C T WNT4 3'UTR 0.49 TCGA-EK-A2RK-01 1 227079026 227079026 C T PSEN2 Nonsense_Mutation p.Q312* 0.45 TCGA-EK-A2RK-01 1 232533838 232533838 C T SIPA1L2 3'UTR 0.35 TCGA-EK-A2RK-01 1 232534076 232534076 C T SIPA1L2 3'UTR 0.30 TCGA-EK-A2RK-01 1 232534277 232534277 C G SIPA1L2 3'UTR 0.44 TCGA-EK-A2RK-01 1 232534514 232534514 C A SIPA1L2 3'UTR 0.42 TCGA-EK-A2RK-01 1 232534548 232534548 C A SIPA1L2 3'UTR 0.50 TCGA-EK-A2RK-01 1 232534562 232534562 C T SIPA1L2 3'UTR 0.45 TCGA-EK-A2RK-01 1 232534989 232534989 C T SIPA1L2 Missense_Mutation p.E1685K 0.37 deleterious(0) benign(0.405) TCGA-EK-A2RK-01 1 234527332 234527332 G C TARBP1 Silent p.T1619T 0.37 TCGA-EK-A2RK-01 1 248756633 248756633 G A OR2T10 Missense_Mutation p.S146L 0.41 tolerated(0.23) benign(0.081) TCGA-EK-A2RK-01 1 2542727 2542727 C T MMEL1 Silent p.V95V 0.25 TCGA-EK-A2RK-01 1 32084964 32084964 C T HCRTR1 Silent p.F57F 0.48 TCGA-EK-A2RK-01 1 33146475 33146475 G C SYNC 3'UTR 0.37 TCGA-EK-A2RK-01 1 33146592 33146592 G C SYNC 3'UTR 0.40 TCGA-EK-A2RK-01 1 33146655 33146655 G T SYNC 3'UTR 0.29 TCGA-EK-A2RK-01 1 33146670 33146670 G A SYNC 3'UTR 0.24 TCGA-EK-A2RK-01 1 33291767 33291767 C G S100PBP Missense_Mutation p.P23A 0.38 deleterious(0.01) benign(0.228) TCGA-EK-A2RK-01 1 36297122 36297122 C T AGO4 Missense_Mutation p.L315F 0.33 tolerated(0.06) possibly_damaging(0.663) TCGA-EK-A2RK-01 1 36297445 36297445 C T AGO4 Silent p.I343I 0.29 TCGA-EK-A2RK-01 1 39878795 39878795 C T KIAA0754 Missense_Mutation p.P817L 0.25 unknown(0) TCGA-EK-A2RK-01 1 39878942 39878942 C T KIAA0754 Missense_Mutation p.S866F 0.34 benign(0.013) TCGA-EK-A2RK-01 1 44466890 44466890 C G SLC6A9 Silent p.V500V 0.39 TCGA-EK-A2RK-01 1 46509193 46509193 C T PIK3R3 3'UTR 0.37 TCGA-EK-A2RK-01 1 48918758 48918758 G A SPATA6 Missense_Mutation p.L33F 0.36 deleterious(0) probably_damaging(0.994) TCGA-EK-A2RK-01 1 57044973 57044973 G C PPAP2B 5'UTR 0.44 TCGA-EK-A2RK-01 1 5937269 5937269 G A NPHP4 Missense_Mutation p.P901S 0.33 tolerated(0.16) benign(0.126) TCGA-EK-A2RK-01 1 7309668 7309668 C G CAMTA1 Silent p.L140L 0.37 TCGA-EK-A2RK-01 1 85424280 85424280 C G MCOLN2 Missense_Mutation p.D115H 0.27 deleterious(0.04) probably_damaging(0.933) TCGA-EK-A2RK-01 1 89658773 89658773 C G GBP4 Missense_Mutation p.E162Q 0.37 deleterious(0) probably_damaging(0.992) TCGA-EK-A2RK-01 1 94586624 94586624 G C ABCA4 5'UTR 0.38 TCGA-EK-A2RK-01 20 1532404 1532404 C T SIRPD Silent p.V118V 0.35 TCGA-EK-A2RK-01 20 31789434 31789434 G C BPIFA4P RNA 0.35 TCGA-EK-A2RK-01 20 32379270 32379270 G A ZNF341 Missense_Mutation p.E831K 0.06 tolerated_low_confidence(0.06) benign(0.003) TCGA-EK-A2RK-01 20 33030037 33030037 C T ITCH Silent p.H339H 0.60 TCGA-EK-A2RK-01 20 35155325 35155325 G A DLGAP4 Missense_Mutation p.R954H 0.08 deleterious(0.02) probably_damaging(1) TCGA-EK-A2RK-01 20 43571208 43571208 G C TOMM34 3'UTR 0.38 TCGA-EK-A2RK-01 20 43571256 43571256 G A TOMM34 3'UTR 0.33 TCGA-EK-A2RK-01 20 44485852 44485852 C G ACOT8 Missense_Mutation p.E35Q 0.33 deleterious(0) possibly_damaging(0.532) TCGA-EK-A2RK-01 20 5294986 5294986 G A PROKR2 Silent p.F10F 0.32 TCGA-EK-A2RK-01 20 58519266 58519266 G T FAM217B Missense_Mutation p.D90Y 0.24 deleterious(0) probably_damaging(0.979) TCGA-EK-A2RK-01 20 61444515 61444515 G A OGFR Silent p.G516G 0.33 TCGA-EK-A2RK-01 20 62187653 62187653 G C C20orf195 Missense_Mutation p.D213H 0.36 deleterious(0) probably_damaging(0.944) TCGA-EK-A2RK-01 20 62201861 62201861 G C HELZ2 Missense_Mutation p.S189C 0.37 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RK-01 20 8755253 8755253 G A PLCB1 Missense_Mutation p.E1000K 0.38 tolerated(0.09) possibly_damaging(0.811) TCGA-EK-A2RK-01 21 45711044 45711044 C T AIRE Missense_Mutation p.R316W 0.33 deleterious(0) probably_damaging(0.982) TCGA-EK-A2RK-01 21 47851644 47851644 G T PCNT Nonsense_Mutation p.E2756* 0.27 TCGA-EK-A2RK-01 21 48063477 48063477 G A PRMT2 Missense_Mutation p.G24S 0.30 tolerated(0.39) benign(0.029) TCGA-EK-A2RK-01 22 19754741 19754741 G A TBX1 3'UTR 0.49 TCGA-EK-A2RK-01 22 19799874 19799874 C G GNB1L Silent p.R117R 0.33 TCGA-EK-A2RK-01 22 21058272 21058272 C A PI4KA 3'Flank 0.47 TCGA-EK-A2RK-01 22 22868784 22868784 C T ZNF280A Missense_Mutation p.E391K 0.34 deleterious(0.02) possibly_damaging(0.84) TCGA-EK-A2RK-01 22 25331426 25331426 G C TMEM211 Silent p.L88L 0.39 TCGA-EK-A2RK-01 22 29956727 29956727 G C NIPSNAP1 Silent p.L234L 0.38 TCGA-EK-A2RK-01 22 29956745 29956745 G C NIPSNAP1 Silent p.L228L 0.34 TCGA-EK-A2RK-01 22 32108390 32108390 C G PRR14L Missense_Mutation p.R1812T 0.46 deleterious(0) possibly_damaging(0.714) TCGA-EK-A2RK-01 22 35691659 35691659 G C HMGXB4 3'UTR 0.34 TCGA-EK-A2RK-01 22 35948806 35948806 G A RASD2 3'UTR 0.27 TCGA-EK-A2RK-01 22 35948812 35948812 G A RASD2 3'UTR 0.30 TCGA-EK-A2RK-01 22 39884875 39884875 C T MGAT3 Missense_Mutation p.T508M 0.27 tolerated_low_confidence(0.07) benign(0.046) TCGA-EK-A2RK-01 22 41545822 41545822 C T EP300 Nonsense_Mutation p.Q813* 0.46 TCGA-EK-A2RK-01 22 42392785 42392785 G C SEPT3 Intron 0.31 TCGA-EK-A2RK-01 22 44372002 44372002 C T SAMM50 Missense_Mutation p.S239L 0.36 deleterious(0.01) benign(0.089) TCGA-EK-A2RK-01 22 45182431 45182431 G C ARHGAP8 Silent p.L130L 0.36 TCGA-EK-A2RK-01 22 46931242 46931242 G T CELSR1 Missense_Mutation p.S609Y 0.31 deleterious(0.03) possibly_damaging(0.77) TCGA-EK-A2RK-01 22 51019907 51019907 G C CHKB Missense_Mutation p.H175D 0.35 deleterious(0) probably_damaging(1) TCGA-EK-A2RK-01 2 10269956 10269956 C T RRM2 3'UTR 0.39 TCGA-EK-A2RK-01 2 131522894 131522894 C T AMER3 3'UTR 0.35 TCGA-EK-A2RK-01 2 136564854 136564854 G A LCT Silent p.F1339F 0.40 TCGA-EK-A2RK-01 2 139327545 139327545 G C SPOPL 3'UTR 0.52 TCGA-EK-A2RK-01 2 170366664 170366664 C T KLHL41 Missense_Mutation p.L126F 0.45 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RK-01 2 178415583 178415583 C G TTC30B Missense_Mutation p.E637Q 0.35 tolerated(0.43) benign(0.004) TCGA-EK-A2RK-01 2 179395192 179395192 C T TTN Missense_Mutation p.E35384K 0.33 TCGA-EK-A2RK-01 2 179395466 179395466 C G TTN Silent p.L35292L 0.34 TCGA-EK-A2RK-01 2 179585135 179585135 C T TTN Missense_Mutation p.C7785Y 0.46 TCGA-EK-A2RK-01 2 179702250 179702250 C T CCDC141 Missense_Mutation p.M1232I 0.47 tolerated(0.07) benign(0.373) TCGA-EK-A2RK-01 2 210682667 210682667 G A UNC80 Missense_Mutation p.V562I 0.42 benign(0.016) TCGA-EK-A2RK-01 2 222283898 222283898 G T EPHA4 3'UTR 0.22 TCGA-EK-A2RK-01 2 233201339 233201339 G C DIS3L2 Nonstop_Mutation p.*886Sext*23 0.35 TCGA-EK-A2RK-01 2 239010706 239010706 C T ESPNL Missense_Mutation p.P140L 0.44 deleterious(0.03) probably_damaging(0.991) TCGA-EK-A2RK-01 2 61493167 61493167 C T USP34 Missense_Mutation p.E1857K 0.40 tolerated(0.33) benign(0.013) TCGA-EK-A2RK-01 2 72358346 72358346 C T CYP26B1 3'UTR 0.47 TCGA-EK-A2RK-01 2 85051106 85051106 G A TRABD2A Silent p.F386F 0.29 TCGA-EK-A2RK-01 2 96458026 96458026 G A AC008268.2 RNA 0.29 TCGA-EK-A2RK-01 2 99006149 99006149 G A CNGA3 Missense_Mutation p.V160M 0.44 deleterious(0.01) possibly_damaging(0.593) TCGA-EK-A2RK-01 3 108897102 108897102 C G LINC00488 RNA 0.30 TCGA-EK-A2RK-01 3 119196263 119196263 G C POGLUT1 Missense_Mutation p.E142Q 0.45 tolerated(0.58) benign(0.038) TCGA-EK-A2RK-01 3 119242575 119242575 C T TIMMDC1 Missense_Mutation p.S277L 0.40 deleterious(0) benign(0.439) TCGA-EK-A2RK-01 3 133347256 133347256 C T TOPBP1 Silent p.K918K 0.35 TCGA-EK-A2RK-01 3 14183879 14183879 G A TMEM43 3'UTR 0.45 TCGA-EK-A2RK-01 3 14199944 14199944 G A XPC Missense_Mutation p.S480F 0.29 deleterious(0.01) benign(0.02) TCGA-EK-A2RK-01 3 150416593 150416593 C G FAM194A Missense_Mutation p.D180H 0.44 tolerated(0.17) benign(0.042) TCGA-EK-A2RK-01 3 160117444 160117444 G C SMC4 5'UTR 0.53 TCGA-EK-A2RK-01 3 16419401 16419401 C T RFTN1 Missense_Mutation p.R217K 0.34 tolerated(0.91) benign(0.003) TCGA-EK-A2RK-01 3 16524345 16524345 C G RFTN1 Intron 0.62 TCGA-EK-A2RK-01 3 189612672 189612672 G C TP63 3'UTR 0.30 TCGA-EK-A2RK-01 3 189675690 189675690 C A LEPREL1 3'UTR 0.31 TCGA-EK-A2RK-01 3 195395487 195395487 C G SDHAP2 RNA 0.22 TCGA-EK-A2RK-01 3 195513362 195513362 G A MUC4 Missense_Mutation p.L1697F 0.18 possibly_damaging(0.834) TCGA-EK-A2RK-01 3 47030778 47030778 G A NBEAL2 Missense_Mutation p.R127Q 0.35 tolerated(0.6) benign(0.001) TCGA-EK-A2RK-01 3 47896844 47896844 C T MAP4 Missense_Mutation p.G1052E 0.41 deleterious(0) probably_damaging(0.992) TCGA-EK-A2RK-01 3 48663652 48663652 G A SLC26A6 Missense_Mutation p.S755L 0.38 tolerated(1) benign(0.001) TCGA-EK-A2RK-01 3 50395801 50395801 G - TMEM115 Frame_Shift_Del p.L232Cfs*17 0.40 TCGA-EK-A2RK-01 3 51970552 51970552 C T RRP9 Silent p.R179R 0.36 TCGA-EK-A2RK-01 3 51990914 51990914 G A GPR62 3'UTR 0.20 TCGA-EK-A2RK-01 3 52402868 52402868 G A DNAH1 Missense_Mutation p.M1959I 0.38 probably_damaging(0.994) TCGA-EK-A2RK-01 3 52404213 52404213 G T DNAH1 Missense_Mutation p.D2076Y 0.36 possibly_damaging(0.886) TCGA-EK-A2RK-01 3 52404241 52404241 G C DNAH1 Missense_Mutation p.R2085T 0.36 benign(0.001) TCGA-EK-A2RK-01 3 74313358 74313358 C G CNTN3 3'UTR 0.36 TCGA-EK-A2RK-01 3 88102308 88102308 C T CGGBP1 3'UTR 0.38 TCGA-EK-A2RK-01 3 9911955 9911955 C T CIDEC Missense_Mutation p.E97K 0.24 deleterious(0.02) possibly_damaging(0.558) TCGA-EK-A2RK-01 4 115898403 115898403 G A NDST4 Missense_Mutation p.R336C 0.52 deleterious(0) probably_damaging(0.995) TCGA-EK-A2RK-01 4 119653979 119653979 G C SEC24D Nonsense_Mutation p.S862* 0.70 TCGA-EK-A2RK-01 4 129793575 129793575 C A JADE1 3'UTR 0.52 TCGA-EK-A2RK-01 4 13601904 13601904 G C BOD1L1 Nonsense_Mutation p.S2207* 0.80 TCGA-EK-A2RK-01 4 26491813 26491813 G A CCKAR Missense_Mutation p.T26M 0.67 deleterious(0) probably_damaging(0.976) TCGA-EK-A2RK-01 4 48592790 48592790 C G FRYL Missense_Mutation p.D465H 0.56 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RK-01 4 75147263 75147263 C T MTHFD2L Silent p.F309F 0.65 TCGA-EK-A2RK-01 5 137683791 137683791 G C FAM53C 3'UTR 0.64 TCGA-EK-A2RK-01 5 140308552 140308552 C G PCDHAC1 Missense_Mutation p.S692C 0.75 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RK-01 5 140308980 140308980 C G PCDHAC1 Intron 0.62 TCGA-EK-A2RK-01 5 140736303 140736303 G A PCDHGA4 Silent p.G512G 0.59 TCGA-EK-A2RK-01 5 145719265 145719265 C T POU4F3 Missense_Mutation p.S92L 0.40 deleterious(0.04) benign(0.006) TCGA-EK-A2RK-01 5 179193509 179193509 C G MAML1 Missense_Mutation p.Q500E 0.59 deleterious(0.03) benign(0.248) TCGA-EK-A2RK-01 5 45260986 45260986 G A HCN1 3'UTR 0.21 TCGA-EK-A2RK-01 5 72208672 72208672 G A TNPO1 3'UTR 0.70 TCGA-EK-A2RK-01 5 72384727 72384727 C A FCHO2 3'UTR 0.76 TCGA-EK-A2RK-01 5 96314850 96314850 C T LNPEP Nonsense_Mutation p.Q10* 0.58 TCGA-EK-A2RK-01 6 10874955 10874955 C T GCM2 Missense_Mutation p.R265K 0.36 tolerated(0.07) benign(0.038) TCGA-EK-A2RK-01 6 109689201 109689201 C G CD164 3'UTR 0.40 TCGA-EK-A2RK-01 6 111279991 111279991 G T GTF3C6 Nonsense_Mutation p.E7* 0.38 TCGA-EK-A2RK-01 6 116943980 116943980 G A RSPH4A Missense_Mutation p.E246K 0.37 tolerated(0.1) benign(0.237) TCGA-EK-A2RK-01 6 12164662 12164662 G A HIVEP1 Missense_Mutation p.D2709N 0.45 deleterious(0) possibly_damaging(0.821) TCGA-EK-A2RK-01 6 159188508 159188508 C T EZR Missense_Mutation p.E461K 0.56 tolerated(0.18) benign(0.41) TCGA-EK-A2RK-01 6 30680935 30680935 G A MDC1 Nonsense_Mutation p.Q262* 0.38 TCGA-EK-A2RK-01 6 31595578 31595578 G A PRRC2A Missense_Mutation p.E443K 0.34 unknown(0) TCGA-EK-A2RK-01 6 31595770 31595770 G C PRRC2A Missense_Mutation p.E507Q 0.40 unknown(0) TCGA-EK-A2RK-01 6 32008517 32008517 G A CYP21A2 Silent p.T397T 0.29 TCGA-EK-A2RK-01 6 33383743 33383743 G T PHF1 Silent p.G524G 0.50 TCGA-EK-A2RK-01 6 36483145 36483145 G C STK38 Missense_Mutation p.I213M 0.46 deleterious(0) probably_damaging(0.971) TCGA-EK-A2RK-01 6 3851483 3851483 G A FAM50B 3'UTR 0.28 TCGA-EK-A2RK-01 6 41060767 41060767 G C NFYA Missense_Mutation p.K277N 0.36 deleterious(0) probably_damaging(0.996) TCGA-EK-A2RK-01 6 42232541 42232541 C G TRERF1 Silent p.L512L 0.36 TCGA-EK-A2RK-01 6 42935173 42935173 C T PEX6 Missense_Mutation p.R606Q 0.31 tolerated(0.88) benign(0) TCGA-EK-A2RK-01 6 43153970 43153970 C T CUL9 Missense_Mutation p.S343L 0.38 deleterious(0.02) benign(0.094) TCGA-EK-A2RK-01 6 46047621 46047621 C T CLIC5 Missense_Mutation p.C120Y 0.19 tolerated_low_confidence(1) benign(0) TCGA-EK-A2RK-01 6 52362971 52362971 C A TRAM2 3'UTR 0.33 TCGA-EK-A2RK-01 6 52868067 52868067 C G ICK 3'UTR 0.38 TCGA-EK-A2RK-01 6 56481855 56481855 G T DST Intron 0.21 TCGA-EK-A2RK-01 6 75812365 75812365 T G COL12A1 Missense_Mutation p.Q2788P 0.25 probably_damaging(0.997) TCGA-EK-A2RK-01 6 84836213 84836213 C T KIAA1009 Missense_Mutation p.E1297K 0.43 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RK-01 6 99849308 99849308 C G PNISR Missense_Mutation p.R509T 0.29 tolerated_low_confidence(0.25) benign(0.402) TCGA-EK-A2RK-01 7 100733327 100733327 C T TRIM56 3'UTR 0.46 TCGA-EK-A2RK-01 7 127670470 127670470 G C LRRC4 Missense_Mutation p.S75W 0.37 tolerated(0.11) possibly_damaging(0.839) TCGA-EK-A2RK-01 7 128489420 128489420 G T FLNC Nonsense_Mutation p.E1663* 0.37 TCGA-EK-A2RK-01 7 128492713 128492713 G A FLNC Missense_Mutation p.E1971K 0.35 deleterious(0.02) probably_damaging(0.994) TCGA-EK-A2RK-01 7 138455977 138455977 G A ATP6V0A4 Nonsense_Mutation p.R6* 0.29 TCGA-EK-A2RK-01 7 138482803 138482803 C T TMEM213 5'UTR 0.40 TCGA-EK-A2RK-01 7 13934126 13934126 G A ETV1 3'UTR 0.22 TCGA-EK-A2RK-01 7 140550007 140550007 C T BRAF Nonsense_Mutation p.W48* 0.28 TCGA-EK-A2RK-01 7 141752684 141752684 C A MGAM Missense_Mutation p.S1020Y 0.36 deleterious(0.01) benign(0.059) TCGA-EK-A2RK-01 7 149571037 149571037 C T ATP6V0E2 Silent p.I10I 0.50 TCGA-EK-A2RK-01 7 151848594 151848595 - GA KMT2C Frame_Shift_Ins p.H4200Lfs*19 0.26 TCGA-EK-A2RK-01 7 151927073 151927073 C T KMT2C Missense_Mutation p.E971K 0.08 probably_damaging(0.999) TCGA-EK-A2RK-01 7 23682789 23682789 G A CCDC126 3'UTR 0.34 TCGA-EK-A2RK-01 7 26225031 26225031 G C NFE2L3 Silent p.L571L 0.37 TCGA-EK-A2RK-01 7 4801904 4801904 G A FOXK1 Missense_Mutation p.E671K 0.38 deleterious_low_confidence(0.02) benign(0.164) TCGA-EK-A2RK-01 7 56067559 56067559 C G GBAS 3'UTR 0.50 TCGA-EK-A2RK-01 7 65224225 65224225 G A SNORA22 3'Flank 0.32 TCGA-EK-A2RK-01 7 99311102 99311102 C T CYP3A7 Silent p.E285E 0.35 TCGA-EK-A2RK-01 7 99474453 99474453 G C OR2AE1 Silent p.L68L 0.30 TCGA-EK-A2RK-01 7 99474518 99474518 G C OR2AE1 Missense_Mutation p.L47V 0.35 deleterious(0.03) benign(0.219) TCGA-EK-A2RK-01 8 12943362 12943362 G A DLC1 Silent p.F1515F 0.53 TCGA-EK-A2RK-01 8 133899234 133899234 G C TG Missense_Mutation p.K539N 0.39 deleterious(0.02) benign(0.295) TCGA-EK-A2RK-01 8 17078905 17078906 - T ZDHHC2 3'UTR 0.36 TCGA-EK-A2RK-01 8 48973239 48973239 C T UBE2V2 Intron 0.42 TCGA-EK-A2RK-01 8 77765047 77765047 C T ZFHX4 Missense_Mutation p.H1964Y 0.09 benign(0.291) TCGA-EK-A2RK-01 9 107380216 107380216 C G OR13C9 Missense_Mutation p.K90N 0.36 tolerated(0.09) probably_damaging(0.997) TCGA-EK-A2RK-01 9 123907225 123907225 G A CNTRL Silent p.Q1052Q 0.26 TCGA-EK-A2RK-01 9 124979434 124979434 C A LHX6 Nonsense_Mutation p.E199* 0.34 TCGA-EK-A2RK-01 9 127765467 127765467 C G SCAI Missense_Mutation p.E354Q 0.28 tolerated(0.17) benign(0.076) TCGA-EK-A2RK-01 9 13176300 13176300 A T MPDZ Missense_Mutation p.S922R 0.28 tolerated(0.07) benign(0.007) TCGA-EK-A2RK-01 9 134151362 134151387 AGTGGGGTGTCCGGTAGCGGAGCACC - FAM78A Frame_Shift_Del p.V61Pfs*91 0.32 TCGA-EK-A2RK-01 9 136857230 136857230 G C VAV2 Silent p.L57L 0.67 TCGA-EK-A2RK-01 9 136857321 136857321 G C VAV2 Missense_Mutation p.S27W 0.60 deleterious(0.01) probably_damaging(0.957) TCGA-EK-A2RK-01 9 138903634 138903634 C T NACC2 Missense_Mutation p.E498K 0.29 deleterious_low_confidence(0) possibly_damaging(0.709) TCGA-EK-A2RK-01 9 139264763 139264763 C T CARD9 Missense_Mutation p.E312K 0.41 deleterious(0.03) possibly_damaging(0.604) TCGA-EK-A2RK-01 9 139311359 139311359 C T PMPCA Intron 0.39 TCGA-EK-A2RK-01 9 139804386 139804386 C T TRAF2 Silent p.V181V 0.35 TCGA-EK-A2RK-01 9 139937556 139937556 C T NPDC1 Intron 0.38 TCGA-EK-A2RK-01 9 19372056 19372056 G A DENND4C Missense_Mutation p.G1872E 0.38 tolerated(0.06) benign(0.004) TCGA-EK-A2RK-01 9 27109601 27109601 G A TEK Missense_Mutation p.A5T 0.39 tolerated(0.68) unknown(0) TCGA-EK-A2RK-01 9 32542823 32542823 G C TOPORS Nonsense_Mutation p.S567* 0.25 TCGA-EK-A2RK-01 9 36583688 36583688 C T MELK Silent p.I41I 0.35 TCGA-EK-A2RK-01 9 71789346 71789346 C T TJP2 Missense_Mutation p.R20C 0.43 deleterious(0.05) benign(0.429) TCGA-EK-A2RK-01 9 77339658 77339658 T G TRPM6 Missense_Mutation p.L1980F 0.53 deleterious(0) possibly_damaging(0.89) TCGA-EK-A2RK-01 9 97055557 97055557 C G ZNF169 Intron 0.43 TCGA-EK-A2RK-01 X 102884879 102884879 C T TCEAL1 Missense_Mutation p.P12L 0.28 deleterious_low_confidence(0) benign(0.034) TCGA-EK-A2RK-01 X 109764333 109764333 C G TDGF1P3 RNA 0.44 TCGA-EK-A2RK-01 X 11776885 11776885 C G MSL3 Intron 0.30 TCGA-EK-A2RK-01 X 118370404 118370404 C T PGRMC1 Silent p.F26F 0.40 TCGA-EK-A2RK-01 X 118370416 118370416 C T PGRMC1 Silent p.L30L 0.35 TCGA-EK-A2RK-01 X 140984784 140984784 A T MAGEC3 Missense_Mutation p.S414C 0.35 deleterious(0.01) possibly_damaging(0.869) TCGA-EK-A2RK-01 X 23411550 23411550 G A PTCHD1 Missense_Mutation p.E639K 0.37 tolerated(0.24) benign(0.371) TCGA-EK-A2RK-01 X 48324406 48324406 C T SLC38A5 Missense_Mutation p.E163K 0.27 tolerated(0.45) benign(0.424) TCGA-EK-A2RK-01 X 62974366 62974366 C T ARHGEF9 5'UTR 0.30 TCGA-EK-A2RK-01 X 65486299 65486299 A T HEPH Missense_Mutation p.I1142F 0.33 tolerated(0.7) benign(0.002) TCGA-EK-A2RK-01 X 70073170 70073170 C T TEX11 Missense_Mutation p.M126I 0.51 tolerated(0.42) benign(0) TCGA-EK-A2RK-01 X 86772953 86772953 G C KLHL4 Missense_Mutation p.W19C 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EK-A2RL-01 10 118427793 118427793 G A C10orf82 Silent p.L11L 0.50 TCGA-EK-A2RL-01 11 113270974 113270974 C T ANKK1 Silent p.A761A 0.92 TCGA-EK-A2RL-01 12 122235451 122235451 G T RHOF 5'Flank 0.24 TCGA-EK-A2RL-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.54 deleterious(0) benign(0.361) TCGA-EK-A2RL-01 12 48386683 48386683 C T COL2A1 Missense_Mutation p.R334Q 0.37 unknown(0) TCGA-EK-A2RL-01 12 73012759 73012759 C T TRHDE Nonsense_Mutation p.R759* 0.34 TCGA-EK-A2RL-01 14 30066911 30066911 C A PRKD1 Silent p.R740R 0.64 TCGA-EK-A2RL-01 14 74824923 74824923 G A VRTN Silent p.A479A 0.50 TCGA-EK-A2RL-01 15 34356289 34356289 G A CHRM5 Silent p.P457P 0.13 TCGA-EK-A2RL-01 16 23585186 23585186 C T UBFD1 3'UTR 0.88 TCGA-EK-A2RL-01 16 27642395 27642395 G A KIAA0556 Missense_Mutation p.R107Q 0.28 tolerated(0.44) benign(0.013) TCGA-EK-A2RL-01 16 56704434 56704434 C T MT1H Silent p.C15C 0.43 TCGA-EK-A2RL-01 17 10404045 10404045 C T MYH1 Missense_Mutation p.A1255T 0.47 tolerated(1) benign(0.001) TCGA-EK-A2RL-01 17 76167900 76167900 G A SYNGR2 Silent p.P186P 0.54 TCGA-EK-A2RL-01 18 33290074 33290074 C T GALNT1 3'UTR 0.15 TCGA-EK-A2RL-01 19 15806798 15806798 A T CYP4F12 Missense_Mutation p.R390W 0.45 deleterious(0) probably_damaging(1) TCGA-EK-A2RL-01 19 17132955 17132955 C G CPAMD8 Silent p.A90A 0.49 TCGA-EK-A2RL-01 19 57724021 57724021 C T ZNF264 Missense_Mutation p.S519L 0.41 deleterious(0.01) benign(0.391) TCGA-EK-A2RL-01 1 145281687 145281687 A T NOTCH2NL Missense_Mutation p.E206V 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-EK-A2RL-01 1 204948593 204948593 G A NFASC Silent p.P694P 0.40 TCGA-EK-A2RL-01 1 231402067 231402067 C T GNPAT Silent p.S323S 0.53 TCGA-EK-A2RL-01 1 87188292 87188292 C T SH3GLB1 Missense_Mutation p.T138M 0.35 deleterious(0.01) probably_damaging(0.944) TCGA-EK-A2RL-01 22 30189461 30189461 C T ASCC2 Missense_Mutation p.E603K 0.36 tolerated(0.14) benign(0.102) TCGA-EK-A2RL-01 22 35719764 35719764 G A TOM1 Missense_Mutation p.V169M 0.46 deleterious(0.05) probably_damaging(0.959) TCGA-EK-A2RL-01 2 120281809 120281809 C T SCTR 5'UTR 0.31 TCGA-EK-A2RL-01 2 148674936 148674937 - A ACVR2A Frame_Shift_Ins p.R255Tfs*6 0.27 TCGA-EK-A2RL-01 2 26680943 26680943 G C OTOF 3'UTR 0.20 TCGA-EK-A2RL-01 2 61711217 61711217 A C XPO1 Missense_Mutation p.H844Q 0.51 deleterious(0.01) probably_damaging(0.988) TCGA-EK-A2RL-01 2 80540713 80540713 G A CTNNA2 Intron 0.46 TCGA-EK-A2RL-01 3 113120479 113120479 G A WDR52 Silent p.F426F 0.24 TCGA-EK-A2RL-01 3 121774286 121774286 C G CD86 5'UTR 0.23 TCGA-EK-A2RL-01 3 183399418 183399418 C A KLHL24 3'UTR 0.16 TCGA-EK-A2RL-01 3 97439229 97439229 C A EPHA6 Missense_Mutation p.P970H 0.21 deleterious(0) probably_damaging(1) TCGA-EK-A2RL-01 4 153249384 153249384 C A FBXW7 Missense_Mutation p.R465L 0.45 deleterious(0) probably_damaging(0.966) TCGA-EK-A2RL-01 4 156137029 156137029 C T NPY2R 3'UTR 0.36 TCGA-EK-A2RL-01 4 184930517 184930517 G A STOX2 Missense_Mutation p.G176R 0.44 tolerated(0.08) possibly_damaging(0.895) TCGA-EK-A2RL-01 4 1980533 1980533 C T WHSC1 Missense_Mutation p.S1332L 0.26 tolerated(0.22) benign(0.007) TCGA-EK-A2RL-01 7 141177097 141177097 G T TMEM178B 3'UTR 0.35 TCGA-EK-A2RL-01 7 143417362 143417362 G A FAM115C Missense_Mutation p.V404I 0.18 tolerated(0.07) benign(0.009) TCGA-EK-A2RL-01 7 92300823 92300823 G A CDK6 Silent p.P188P 0.26 TCGA-EK-A2RL-01 7 98529255 98529255 G T TRRAP Missense_Mutation p.K1273N 0.34 possibly_damaging(0.889) TCGA-EK-A2RL-01 8 35624428 35624428 G A UNC5D Silent p.P774P 0.49 TCGA-EK-A2RL-01 8 57077182 57077182 C T PLAG1 3'UTR 0.53 TCGA-EK-A2RL-01 9 34990537 34990537 G A DNAJB5 Intron 0.50 TCGA-EK-A2RL-01 X 111145031 111145031 G T TRPC5 Intron 0.38 TCGA-EK-A2RL-01 X 53117294 53117294 G - TSPYL2 3'UTR 0.41 TCGA-EK-A2RL-01 X 76778779 76778779 G T ATRX Missense_Mutation p.T2267N 0.41 probably_damaging(0.926) TCGA-EK-A2RL-01 X 91875759 91875759 C A PCDH11X 3'UTR 0.52 TCGA-EK-A2RM-01 10 21807489 21807489 C T SKIDA1 5'UTR 0.29 TCGA-EK-A2RM-01 10 70242977 70242977 C A SLC25A16 3'UTR 0.33 TCGA-EK-A2RM-01 11 108029117 108029117 C T NPAT 3'UTR 0.36 TCGA-EK-A2RM-01 11 26700263 26700263 T G SLC5A12 Silent p.I525I 0.13 TCGA-EK-A2RM-01 11 30352775 30352775 G A ARL14EP Missense_Mutation p.D94N 0.62 tolerated(0.21) probably_damaging(0.993) TCGA-EK-A2RM-01 11 36596883 36596883 C T RAG1 Missense_Mutation p.P677S 0.70 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EK-A2RM-01 11 56057997 56057997 G C OR8H1 Missense_Mutation p.S181C 0.36 tolerated(0.09) possibly_damaging(0.781) TCGA-EK-A2RM-01 11 62370637 62370637 C G EML3 Silent p.L780L 0.12 TCGA-EK-A2RM-01 11 62470017 62470017 C T BSCL2 Missense_Mutation p.D137N 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-EK-A2RM-01 11 85374092 85374092 T A CREBZF 3'UTR 0.28 TCGA-EK-A2RM-01 11 92702900 92702900 G A MTNR1B Silent p.E3E 0.40 TCGA-EK-A2RM-01 12 116444206 116444206 C A MED13L Missense_Mutation p.G750V 0.43 deleterious(0.05) unknown(0) TCGA-EK-A2RM-01 12 129694139 129694139 C T TMEM132D Missense_Mutation p.V457M 0.15 deleterious(0) probably_damaging(0.95) TCGA-EK-A2RM-01 12 21370233 21370233 G T SLCO1B1 Missense_Mutation p.V560F 0.24 tolerated(1) benign(0.013) TCGA-EK-A2RM-01 12 21970183 21970183 C T ABCC9 Missense_Mutation p.G1277D 0.10 tolerated(0.12) benign(0.097) TCGA-EK-A2RM-01 12 31944398 31944398 C G H3F3C 3'UTR 0.46 TCGA-EK-A2RM-01 12 49458606 49458606 G A RHEBL1 3'UTR 0.56 TCGA-EK-A2RM-01 12 51584302 51584302 C A POU6F1 Missense_Mutation p.A212S 0.49 deleterious(0) probably_damaging(0.922) TCGA-EK-A2RM-01 12 55025554 55025554 C G LACRT Missense_Mutation p.G108A 0.12 tolerated_low_confidence(0.36) possibly_damaging(0.899) TCGA-EK-A2RM-01 12 72866927 72866927 T C TRHDE Silent p.V472V 0.34 TCGA-EK-A2RM-01 12 7966690 7966690 G A SLC2A14 3'UTR 0.71 TCGA-EK-A2RM-01 13 107144286 107144286 A T EFNB2 3'UTR 0.64 TCGA-EK-A2RM-01 13 46801701 46801701 C G LRRC63 Missense_Mutation p.T47S 0.45 tolerated(0.2) benign(0.069) TCGA-EK-A2RM-01 13 78337492 78337492 T C SLAIN1 3'UTR 0.46 TCGA-EK-A2RM-01 14 100847705 100847705 C A WDR25 Missense_Mutation p.F148L 0.25 tolerated(0.75) benign(0.004) TCGA-EK-A2RM-01 14 103414075 103414075 T C CDC42BPB Missense_Mutation p.I1172V 0.22 tolerated(0.49) benign(0.012) TCGA-EK-A2RM-01 14 19553373 19553373 C T POTEG 5'UTR 0.16 TCGA-EK-A2RM-01 14 69517769 69517769 C G DCAF5 3'UTR 0.50 TCGA-EK-A2RM-01 15 42459039 42459039 C T VPS39 Missense_Mutation p.V484M 0.41 deleterious(0.03) benign(0.3) TCGA-EK-A2RM-01 15 42839630 42839630 G C LRRC57 Silent p.L107L 0.46 TCGA-EK-A2RM-01 15 55965620 55965620 C T PRTG Missense_Mutation p.E601K 0.30 tolerated(0.09) probably_damaging(0.986) TCGA-EK-A2RM-01 15 68125544 68125544 G A SKOR1 Missense_Mutation p.E821K 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.502) TCGA-EK-A2RM-01 15 74884139 74884139 C T ARID3B Silent p.I468I 0.53 TCGA-EK-A2RM-01 15 75248520 75248520 G T RPP25 Silent p.L135L 0.58 TCGA-EK-A2RM-01 15 90807208 90807208 G A TTLL13 3'Flank 0.42 TCGA-EK-A2RM-01 15 93443606 93443606 C G CHD2 5'UTR 0.06 TCGA-EK-A2RM-01 16 53922804 53922804 G A FTO Missense_Mutation p.D394N 0.07 tolerated(0.1) benign(0.052) TCGA-EK-A2RM-01 16 70955058 70955062 CCTAA - HYDIN Frame_Shift_Del p.V2406Gfs*6 0.21 TCGA-EK-A2RM-01 17 1395793 1395793 G C MYO1C 5'UTR 0.70 TCGA-EK-A2RM-01 17 37882863 37882863 C T ERBB2 Missense_Mutation p.S974F 0.09 deleterious(0) possibly_damaging(0.457) TCGA-EK-A2RM-01 17 37883194 37883194 C - ERBB2 Frame_Shift_Del p.P1033Qfs*27 0.10 TCGA-EK-A2RM-01 17 40947980 40947980 G C WNK4 Missense_Mutation p.L1120F 0.79 deleterious(0.01) probably_damaging(0.965) TCGA-EK-A2RM-01 17 45886586 45886586 C T OSBPL7 Missense_Mutation p.A676T 0.56 deleterious(0.05) possibly_damaging(0.639) TCGA-EK-A2RM-01 17 71228291 71228291 G C FAM104A Missense_Mutation p.S52C 0.29 tolerated_low_confidence(0.14) benign(0.056) TCGA-EK-A2RM-01 18 9887548 9887548 G T TXNDC2 Missense_Mutation p.D358Y 0.37 deleterious(0.01) possibly_damaging(0.871) TCGA-EK-A2RM-01 19 10597423 10597429 CCTCGCT - KEAP1 Frame_Shift_Del p.S592* 0.54 TCGA-EK-A2RM-01 19 17040049 17040049 C T CPAMD8 Silent p.E996E 0.23 TCGA-EK-A2RM-01 19 19625601 19625601 G A TSSK6 Silent p.F212F 0.47 TCGA-EK-A2RM-01 19 36207608 36207608 C T ZBTB32 Missense_Mutation p.S473F 0.43 deleterious_low_confidence(0) unknown(0) TCGA-EK-A2RM-01 19 41008190 41008190 C T SPTBN4 Silent p.F351F 0.33 TCGA-EK-A2RM-01 19 44516641 44516641 G A ZNF230 3'UTR 0.28 TCGA-EK-A2RM-01 19 44660412 44660412 G A ZNF234 Silent p.K81K 0.25 TCGA-EK-A2RM-01 19 49119415 49119415 G A RPL18 Silent p.L114L 0.32 TCGA-EK-A2RM-01 19 57911124 57911124 C G ZNF548 Missense_Mutation p.S502C 0.50 deleterious(0.03) probably_damaging(0.998) TCGA-EK-A2RM-01 1 115417139 115417139 G A SYCP1 Missense_Mutation p.R204Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RM-01 1 149761707 149761707 G A FCGR1A Silent p.Q219Q 0.23 TCGA-EK-A2RM-01 1 155899522 155899522 C T KIAA0907 Missense_Mutation p.R122Q 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-EK-A2RM-01 1 158300670 158300670 C A CD1B Missense_Mutation p.A82S 0.09 tolerated(0.73) benign(0.022) TCGA-EK-A2RM-01 1 161954873 161954873 C T OLFML2B Intron 0.64 TCGA-EK-A2RM-01 1 16890492 16890492 C T NBPF1 Silent p.L1122L 0.12 TCGA-EK-A2RM-01 1 169806200 169806200 G C C1orf112 Missense_Mutation p.E558Q 0.07 tolerated(1) benign(0.001) TCGA-EK-A2RM-01 1 173933132 173933132 C G RC3H1 Missense_Mutation p.E604Q 0.25 deleterious(0.04) possibly_damaging(0.46) TCGA-EK-A2RM-01 1 175116136 175116136 C T TNN Missense_Mutation p.H1277Y 0.04 tolerated(1) benign(0.012) TCGA-EK-A2RM-01 1 205501226 205501226 G A CDK18 3'Flank 0.33 TCGA-EK-A2RM-01 1 234367168 234367168 G A SLC35F3 Missense_Mutation p.E97K 0.87 tolerated(0.17) benign(0.302) TCGA-EK-A2RM-01 1 3746402 3746402 C G CEP104 Missense_Mutation p.E666Q 0.66 deleterious(0.02) possibly_damaging(0.579) TCGA-EK-A2RM-01 1 54304157 54304158 - TT NDC1 5'UTR 0.35 TCGA-EK-A2RM-01 1 75685533 75685533 G T SLC44A5 Missense_Mutation p.T377N 0.26 deleterious(0) probably_damaging(1) TCGA-EK-A2RM-01 20 17474833 17474833 G A BFSP1 Silent p.I628I 0.22 TCGA-EK-A2RM-01 20 44469713 44469713 G A SNX21 Missense_Mutation p.E295K 0.26 deleterious(0.01) probably_damaging(0.917) TCGA-EK-A2RM-01 20 55027171 55027171 C T CASS4 Silent p.G313G 0.39 TCGA-EK-A2RM-01 20 642814 642814 G A SCRT2 3'UTR 0.34 TCGA-EK-A2RM-01 22 19171099 19171099 G A CLTCL1 Missense_Mutation p.S1544L 0.26 deleterious(0) probably_damaging(1) TCGA-EK-A2RM-01 22 22869563 22869563 T C ZNF280A Missense_Mutation p.Q131R 0.58 tolerated(0.16) possibly_damaging(0.861) TCGA-EK-A2RM-01 22 37455454 37455454 C T KCTD17 Silent p.S203S 0.48 TCGA-EK-A2RM-01 22 40415274 40415274 G T FAM83F Nonsense_Mutation p.E198* 0.37 TCGA-EK-A2RM-01 2 112821757 112821757 C T TMEM87B Missense_Mutation p.S82F 0.40 deleterious(0.03) benign(0.379) TCGA-EK-A2RM-01 2 144765000 144765000 C G GTDC1 Missense_Mutation p.Q208H 0.39 tolerated_low_confidence(0.39) benign(0.261) TCGA-EK-A2RM-01 2 163204106 163204106 C T GCA Nonsense_Mutation p.Q16* 0.34 TCGA-EK-A2RM-01 2 167300104 167300104 T G SCN7A Missense_Mutation p.N570T 0.41 deleterious(0) probably_damaging(0.977) TCGA-EK-A2RM-01 2 185804101 185804101 G A ZNF804A 3'UTR 0.12 TCGA-EK-A2RM-01 2 196581640 196581640 C A SLC39A10 Missense_Mutation p.S659Y 0.41 deleterious(0.01) probably_damaging(0.914) TCGA-EK-A2RM-01 2 32853428 32853428 G A TTC27 Silent p.Q23Q 0.46 TCGA-EK-A2RM-01 2 33482425 33482425 C T LTBP1 Missense_Mutation p.H748Y 0.06 tolerated(0.16) benign(0.303) TCGA-EK-A2RM-01 2 33741686 33741686 G A RASGRP3 Missense_Mutation p.E50K 0.67 tolerated(0.08) probably_damaging(0.965) TCGA-EK-A2RM-01 2 36805906 36805906 C T FEZ2 Missense_Mutation p.R246Q 0.08 deleterious(0) possibly_damaging(0.897) TCGA-EK-A2RM-01 2 54342688 54342688 C G ACYP2 5'UTR 0.37 TCGA-EK-A2RM-01 2 70187818 70187818 C G ASPRV1 Missense_Mutation p.E335Q 0.35 tolerated_low_confidence(0.24) benign(0.006) TCGA-EK-A2RM-01 2 74710552 74710552 C G TTC31 Intron 0.26 TCGA-EK-A2RM-01 3 10321636 10321636 C G TATDN2 3'UTR 0.46 TCGA-EK-A2RM-01 3 134225995 134225995 A T CEP63 Missense_Mutation p.K30I 0.10 deleterious(0) probably_damaging(0.947) TCGA-EK-A2RM-01 3 147106528 147106528 A T ZIC4 3'UTR 0.27 TCGA-EK-A2RM-01 3 160967267 160967267 G A NMD3 Missense_Mutation p.R410Q 0.53 deleterious(0.03) benign(0.031) TCGA-EK-A2RM-01 3 172351465 172351465 G C NCEH1 Missense_Mutation p.L383V 0.12 deleterious(0.04) possibly_damaging(0.61) TCGA-EK-A2RM-01 3 195507554 195507554 G C MUC4 Missense_Mutation p.L3633V 0.20 benign(0.02) TCGA-EK-A2RM-01 3 44879766 44879766 G A KIF15 Splice_Site p.X1058_splice 0.36 TCGA-EK-A2RM-01 3 47046991 47046991 C G NBEAL2 Silent p.S2191S 0.21 TCGA-EK-A2RM-01 3 48727048 48727048 C T IP6K2 Missense_Mutation p.E235K 0.15 deleterious(0) probably_damaging(0.936) TCGA-EK-A2RM-01 3 63985999 63985999 G C ATXN7 3'UTR 0.09 TCGA-EK-A2RM-01 4 72897635 72897635 G A NPFFR2 Missense_Mutation p.G6E 0.71 deleterious_low_confidence(0) benign(0) TCGA-EK-A2RM-01 5 148977423 148977423 C T ARHGEF37 Nonsense_Mutation p.Q31* 0.66 TCGA-EK-A2RM-01 5 179193233 179193233 C T MAML1 Missense_Mutation p.R408C 0.43 deleterious(0) probably_damaging(0.991) TCGA-EK-A2RM-01 5 82841450 82841450 C T VCAN Silent p.S3120S 0.66 TCGA-EK-A2RM-01 6 1390774 1390774 C T FOXF2 Missense_Mutation p.R198W 0.11 deleterious(0) probably_damaging(0.995) TCGA-EK-A2RM-01 6 46190139 46190139 G A RCAN2 3'UTR 0.30 TCGA-EK-A2RM-01 6 64413516 64413516 C T PHF3 Nonsense_Mutation p.Q1108* 0.26 TCGA-EK-A2RM-01 7 122763182 122763182 C T SLC13A1 Missense_Mutation p.E450K 0.76 tolerated(0.34) benign(0.12) TCGA-EK-A2RM-01 7 99303147 99303147 C T CYP3A7 Silent p.R496R 0.71 TCGA-EK-A2RM-01 8 124268358 124268358 G A ZHX1 5'UTR 0.20 TCGA-EK-A2RM-01 8 140715019 140715019 G A KCNK9 Missense_Mutation p.R73C 0.52 deleterious(0) probably_damaging(0.995) TCGA-EK-A2RM-01 8 145622863 145622863 C T CPSF1 Missense_Mutation p.D742N 0.27 tolerated(0.18) benign(0.302) TCGA-EK-A2RM-01 8 145622967 145622967 G T CPSF1 Nonsense_Mutation p.S734* 0.25 TCGA-EK-A2RM-01 8 16043768 16043768 C T MSR1 Intron 0.20 TCGA-EK-A2RM-01 8 24814006 24814006 C T CTD-2168K21.2 5'Flank 0.29 TCGA-EK-A2RM-01 8 37692713 37692713 G C GPR124 Missense_Mutation p.E544Q 0.45 deleterious(0) possibly_damaging(0.874) TCGA-EK-A2RM-01 8 48842522 48842522 G C PRKDC Nonsense_Mutation p.S648* 0.55 TCGA-EK-A2RM-01 8 48869744 48869744 G C PRKDC Missense_Mutation p.S104C 0.22 benign(0.001) TCGA-EK-A2RM-01 8 94937448 94937448 G A PDP1 3'UTR 0.60 TCGA-EK-A2RM-01 9 140147769 140147769 C G C9orf173 Missense_Mutation p.P339A 0.78 deleterious_low_confidence(0) benign(0.095) TCGA-EK-A2RM-01 9 2029101 2029101 C T SMARCA2 Missense_Mutation p.L27F 0.41 unknown(0) TCGA-EK-A2RM-01 9 72006588 72006588 G A FAM189A2 Silent p.L407L 0.71 TCGA-EK-A2RM-01 9 85624567 85624567 C T RASEF Silent p.L316L 0.67 TCGA-EK-A2RM-01 9 85627376 85627376 C - RASEF Frame_Shift_Del p.K274Nfs*18 0.53 TCGA-EK-A2RM-01 9 85627423 85627423 C G RASEF Missense_Mutation p.E257Q 0.74 tolerated(0.11) probably_damaging(0.999) TCGA-EK-A2RM-01 X 105449602 105449602 T G MUM1L1 Missense_Mutation p.N59K 0.36 tolerated(0.1) benign(0.115) TCGA-EK-A2RM-01 X 106039453 106039453 G A RNF128 3'UTR 0.57 TCGA-EK-A2RM-01 X 106221314 106221314 A C MORC4 Missense_Mutation p.V351G 0.23 tolerated(0.05) benign(0.224) TCGA-EK-A2RM-01 X 109764868 109764868 C T TDGF1P3 RNA 0.28 TCGA-EK-A2RM-01 X 153908482 153908482 G A GAB3 Missense_Mutation p.T525M 0.25 tolerated(0.35) benign(0.004) TCGA-EK-A2RM-01 X 27997827 27997827 G T DCAF8L1 Nonsense_Mutation p.S542* 0.26 TCGA-EK-A2RM-01 X 38665496 38665496 G C MID1IP1 3'UTR 0.18 TCGA-EK-A2RM-01 X 73044392 73044392 T C XIST RNA 0.32 TCGA-EK-A2RM-01 X 77359731 77359731 C T PGK1 5'UTR 0.20 TCGA-EK-A2RN-01 10 11372292 11372292 G A CELF2 Intron 0.24 TCGA-EK-A2RN-01 10 123246865 123246865 C T FGFR2 Intron 0.31 TCGA-EK-A2RN-01 10 17195411 17195411 C G TRDMT1 Intron 0.39 TCGA-EK-A2RN-01 10 27459156 27459156 C T MASTL Missense_Mutation p.S423L 0.68 deleterious(0.05) benign(0.011) TCGA-EK-A2RN-01 10 38407509 38407509 G A ZNF37A Missense_Mutation p.R477H 0.23 tolerated(0.52) probably_damaging(0.997) TCGA-EK-A2RN-01 10 64022535 64022535 C T RTKN2 Missense_Mutation p.E36K 0.25 deleterious(0.01) benign(0.064) TCGA-EK-A2RN-01 10 75559113 75559113 G A ZSWIM8 Silent p.L1510L 0.40 TCGA-EK-A2RN-01 10 81317181 81317181 G A SFTPA2 Silent p.F177F 0.30 TCGA-EK-A2RN-01 11 105881257 105881257 C A MSANTD4 Missense_Mutation p.D130Y 0.25 tolerated(0.07) probably_damaging(0.921) TCGA-EK-A2RN-01 11 108385575 108385575 G A EXPH5 Missense_Mutation p.A220V 0.18 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RN-01 11 124135375 124135375 C T OR8G5 Missense_Mutation p.S218F 0.14 deleterious(0) possibly_damaging(0.593) TCGA-EK-A2RN-01 11 124637698 124637698 C G MSANTD2 Missense_Mutation p.E300Q 0.23 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EK-A2RN-01 11 18750476 18750476 C T PTPN5 3'UTR 0.50 TCGA-EK-A2RN-01 11 22257799 22257799 T C ANO5 Missense_Mutation p.S247P 0.29 tolerated(0.22) possibly_damaging(0.634) TCGA-EK-A2RN-01 11 27520959 27520959 C G LIN7C Missense_Mutation p.D129H 0.22 deleterious(0.02) probably_damaging(0.926) TCGA-EK-A2RN-01 11 33667358 33667358 G A KIAA1549L Missense_Mutation p.E1549K 0.08 deleterious(0) probably_damaging(0.954) TCGA-EK-A2RN-01 11 36598805 36598805 C G RAG1 3'UTR 0.18 TCGA-EK-A2RN-01 11 3832559 3832559 C T PGAP2 Silent p.L24L 0.24 TCGA-EK-A2RN-01 11 43350418 43350418 G A API5 Missense_Mutation p.E368K 0.20 deleterious(0.05) benign(0.41) TCGA-EK-A2RN-01 11 55873012 55873012 G A OR8H2 Missense_Mutation p.R165K 0.18 tolerated(0.15) benign(0.013) TCGA-EK-A2RN-01 11 59421511 59421511 G A PATL1 Missense_Mutation p.H356Y 0.47 deleterious(0) possibly_damaging(0.808) TCGA-EK-A2RN-01 11 6567870 6567870 C T DNHD1 Missense_Mutation p.R1901C 0.49 benign(0.004) TCGA-EK-A2RN-01 11 66461714 66461714 C A SPTBN2 Nonsense_Mutation p.E1467* 0.16 TCGA-EK-A2RN-01 11 66461724 66461724 C G SPTBN2 Silent p.S1463S 0.13 TCGA-EK-A2RN-01 11 71821638 71821638 G A ANAPC15 Silent p.I44I 0.43 TCGA-EK-A2RN-01 11 84996344 84996344 C T DLG2 Missense_Mutation p.E36K 0.13 deleterious_low_confidence(0.04) benign(0.051) TCGA-EK-A2RN-01 11 88300848 88300848 C T GRM5 Missense_Mutation p.R668H 0.24 deleterious(0) probably_damaging(1) TCGA-EK-A2RN-01 12 110565221 110565221 C G IFT81 Silent p.L12L 0.15 TCGA-EK-A2RN-01 12 131471836 131471836 C T GPR133 Silent p.I229I 0.16 TCGA-EK-A2RN-01 12 22061143 22061143 G A ABCC9 Silent p.I441I 0.21 TCGA-EK-A2RN-01 12 41327645 41327645 G A CNTN1 Missense_Mutation p.G317E 0.21 deleterious(0) probably_damaging(1) TCGA-EK-A2RN-01 12 49220781 49220781 G A CACNB3 Missense_Mutation p.E339K 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A2RN-01 12 52914024 52914024 G A KRT5 Silent p.T19T 0.15 TCGA-EK-A2RN-01 12 54339994 54339994 C T HOXC13 3'UTR 0.16 TCGA-EK-A2RN-01 12 56748582 56748582 C G STAT2 Missense_Mutation p.E205Q 0.12 tolerated(0.17) benign(0.215) TCGA-EK-A2RN-01 12 70748311 70748311 G T CNOT2 3'UTR 0.19 TCGA-EK-A2RN-01 12 78444704 78444704 C T NAV3 Missense_Mutation p.R765C 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-EK-A2RN-01 13 32910752 32910752 C T BRCA2 Nonsense_Mutation p.Q754* 0.28 TCGA-EK-A2RN-01 13 33002135 33002135 G T N4BP2L1 Missense_Mutation p.P29T 0.25 tolerated(0.36) possibly_damaging(0.796) TCGA-EK-A2RN-01 13 37014270 37014270 C T CCNA1 Nonsense_Mutation p.Q350* 0.25 TCGA-EK-A2RN-01 13 58208055 58208055 G A PCDH17 Missense_Mutation p.A459T 0.30 tolerated(1) benign(0.006) TCGA-EK-A2RN-01 13 58298883 58298883 G A PCDH17 Missense_Mutation p.E979K 0.20 deleterious(0.02) probably_damaging(0.915) TCGA-EK-A2RN-01 14 105350257 105350257 G A CEP170B Missense_Mutation p.G381R 0.38 tolerated(0.37) possibly_damaging(0.651) TCGA-EK-A2RN-01 14 105355912 105355912 C T CEP170B Intron 0.27 TCGA-EK-A2RN-01 14 22133660 22133660 C G OR4E2 Missense_Mutation p.R122G 0.18 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RN-01 14 22309689 22309689 G A TRAV12-1 Missense_Mutation p.E24K 0.26 tolerated(0.38) benign(0.016) TCGA-EK-A2RN-01 14 24884524 24884524 C G NYNRIN Nonsense_Mutation p.S1190* 0.14 TCGA-EK-A2RN-01 14 26915382 26915382 C T NOVA1 3'UTR 0.29 TCGA-EK-A2RN-01 14 58604809 58604809 T A C14orf37 Missense_Mutation p.E423V 0.21 tolerated(0.14) possibly_damaging(0.607) TCGA-EK-A2RN-01 14 69701414 69701414 C G EXD2 Intron 0.26 TCGA-EK-A2RN-01 15 23890640 23890640 C T MAGEL2 Missense_Mutation p.M147I 0.33 deleterious_low_confidence(0) benign(0.051) TCGA-EK-A2RN-01 15 28913434 28913434 C T HERC2P9 RNA 0.29 TCGA-EK-A2RN-01 15 48522702 48522702 T C SLC12A1 Splice_Site p.X325_splice 0.25 TCGA-EK-A2RN-01 15 96876510 96876510 C T NR2F2 Intron 0.17 TCGA-EK-A2RN-01 16 2131603 2131603 C T TSC2 Silent p.T1206T 0.22 TCGA-EK-A2RN-01 16 57127986 57127986 C T CPNE2 5'UTR 0.20 TCGA-EK-A2RN-01 16 66966114 66966114 G A FAM96B Missense_Mutation p.R162C 0.29 tolerated_low_confidence(0.1) benign(0.033) TCGA-EK-A2RN-01 16 67197223 67197223 G C FBXL8 Missense_Mutation p.E209Q 0.33 tolerated(0.75) benign(0.377) TCGA-EK-A2RN-01 16 70516653 70516653 G A COG4 Silent p.S633S 0.26 TCGA-EK-A2RN-01 16 78011736 78011736 G C VAT1L 3'UTR 0.17 TCGA-EK-A2RN-01 16 84102009 84102009 C T MBTPS1 Missense_Mutation p.R669K 0.30 deleterious(0.01) probably_damaging(0.979) TCGA-EK-A2RN-01 16 84229183 84229183 G A ADAD2 Missense_Mutation p.G393D 0.14 tolerated(0.06) possibly_damaging(0.703) TCGA-EK-A2RN-01 17 18064645 18064645 G A MYO15A Missense_Mutation p.R3134Q 0.39 unknown(0) TCGA-EK-A2RN-01 17 22024328 22024328 C G MTRNR2L1 3'Flank 0.39 TCGA-EK-A2RN-01 17 27209040 27209040 C T FLOT2 Missense_Mutation p.E236K 0.32 deleterious(0.05) possibly_damaging(0.493) TCGA-EK-A2RN-01 17 35656239 35656239 C T ACACA Intron 0.43 TCGA-EK-A2RN-01 17 39241153 39241153 G C KRTAP4-7 3'UTR 0.26 TCGA-EK-A2RN-01 17 42337837 42337837 G A SLC4A1 Silent p.I140I 0.25 TCGA-EK-A2RN-01 17 42635857 42635857 G C FZD2 Missense_Mutation p.L267F 0.37 tolerated(0.07) possibly_damaging(0.521) TCGA-EK-A2RN-01 17 71427680 71427680 G A SDK2 Missense_Mutation p.R481W 0.32 deleterious(0) probably_damaging(0.977) TCGA-EK-A2RN-01 17 7792996 7792996 C G CHD3 Missense_Mutation p.R98G 0.47 benign(0.25) TCGA-EK-A2RN-01 18 2738531 2738531 C T SMCHD1 Missense_Mutation p.A1138V 0.18 tolerated(0.05) benign(0.403) TCGA-EK-A2RN-01 18 2740790 2740790 G A SMCHD1 Missense_Mutation p.D1202N 0.14 deleterious(0.02) benign(0.178) TCGA-EK-A2RN-01 19 23316967 23316967 G A ZNF730 Missense_Mutation p.R30K 0.10 deleterious(0.04) probably_damaging(0.923) TCGA-EK-A2RN-01 19 3526310 3526310 G A FZR1 Missense_Mutation p.E105K 0.21 tolerated(0.33) benign(0.087) TCGA-EK-A2RN-01 19 44352759 44352759 C G ZNF283 Nonsense_Mutation p.S669* 0.10 TCGA-EK-A2RN-01 19 4525777 4525777 G A PLIN5 Silent p.G196G 0.24 TCGA-EK-A2RN-01 19 50985831 50985831 C T EMC10 3'UTR 0.15 TCGA-EK-A2RN-01 19 51380253 51380253 G A KLK2 Missense_Mutation p.D207N 0.61 deleterious(0.04) possibly_damaging(0.523) TCGA-EK-A2RN-01 19 53993928 53993928 C T ZNF813 Silent p.L148L 0.61 TCGA-EK-A2RN-01 19 54930395 54930396 CC A TTYH1 Frame_Shift_Del p.P74Tfs*78 0.15 TCGA-EK-A2RN-01 19 56599962 56599962 G A ZNF787 Silent p.L193L 0.73 TCGA-EK-A2RN-01 19 57862946 57862946 G A ZNF304 5'UTR 0.15 TCGA-EK-A2RN-01 19 8595349 8595349 C T MYO1F Missense_Mutation p.E718K 0.12 tolerated(0.09) benign(0.088) TCGA-EK-A2RN-01 1 103343636 103343636 T G COL11A1 Missense_Mutation p.D1787A 0.31 unknown(0) TCGA-EK-A2RN-01 1 109839731 109839731 C G MYBPHL Missense_Mutation p.D171H 0.16 deleterious(0.01) probably_damaging(1) TCGA-EK-A2RN-01 1 110734758 110734758 G A SLC6A17 Silent p.T343T 0.30 TCGA-EK-A2RN-01 1 112298256 112298256 G A DDX20 5'UTR 0.31 TCGA-EK-A2RN-01 1 151337064 151337064 C A SELENBP1 Missense_Mutation p.E458D 0.14 tolerated(0.07) benign(0.246) TCGA-EK-A2RN-01 1 153588400 153588400 G C S100A14 5'UTR 0.16 TCGA-EK-A2RN-01 1 153941559 153941559 C T CREB3L4 Missense_Mutation p.P110S 0.14 deleterious(0.03) probably_damaging(1) TCGA-EK-A2RN-01 1 154548431 154548431 C G CHRNB2 3'UTR 0.18 TCGA-EK-A2RN-01 1 159174699 159174699 G A DARC 5'Flank 0.25 TCGA-EK-A2RN-01 1 159770328 159770328 C T FCRL6 5'Flank 0.22 TCGA-EK-A2RN-01 1 168215757 168215757 G C SFT2D2 3'UTR 0.19 TCGA-EK-A2RN-01 1 16945429 16945429 C T RP5-1182A14.5 3'Flank 0.06 TCGA-EK-A2RN-01 1 179887676 179887676 G A TOR1AIP1 3'UTR 0.19 TCGA-EK-A2RN-01 1 186342529 186342529 C T TPR Missense_Mutation p.R73Q 0.18 benign(0.238) TCGA-EK-A2RN-01 1 186646909 186646909 T G PTGS2 Silent p.R171R 0.33 TCGA-EK-A2RN-01 1 1920055 1920055 C T C1orf222 Silent p.K55K 0.07 TCGA-EK-A2RN-01 1 204985781 204985781 G A NFASC 3'UTR 0.13 TCGA-EK-A2RN-01 1 206610390 206610390 G C SRGAP2 Missense_Mutation p.R458T 0.14 deleterious(0) possibly_damaging(0.805) TCGA-EK-A2RN-01 1 2116535 2116535 G A PRKCZ 3'UTR 0.16 TCGA-EK-A2RN-01 1 2239148 2239148 C T SKI 3'UTR 0.22 TCGA-EK-A2RN-01 1 228547607 228547607 G C OBSCN Intron 0.11 TCGA-EK-A2RN-01 1 22903298 22903298 G C EPHA8 Missense_Mutation p.E250Q 0.19 deleterious(0.01) possibly_damaging(0.773) TCGA-EK-A2RN-01 1 230921753 230921753 A C CAPN9 Missense_Mutation p.D503A 0.20 tolerated(0.08) benign(0.005) TCGA-EK-A2RN-01 1 31194483 31194483 C T MATN1 Silent p.S70S 0.40 TCGA-EK-A2RN-01 1 38032562 38032562 C T GNL2 Missense_Mutation p.R697H 0.22 tolerated(0.32) probably_damaging(0.957) TCGA-EK-A2RN-01 1 53373550 53373550 C T ECHDC2 Missense_Mutation p.M118I 0.21 tolerated(0.51) possibly_damaging(0.477) TCGA-EK-A2RN-01 1 6202574 6202574 C T CHD5 Missense_Mutation p.R712H 0.46 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RN-01 1 79412053 79412053 G A ELTD1 Silent p.N77N 0.16 TCGA-EK-A2RN-01 20 35384117 35384117 G T DSN1 Missense_Mutation p.Q281K 0.60 deleterious(0) possibly_damaging(0.755) TCGA-EK-A2RN-01 20 57485827 57485827 C G GNAS Missense_Mutation p.F1019L 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-EK-A2RN-01 20 62076670 62076670 G A KCNQ2 Silent p.I145I 0.20 TCGA-EK-A2RN-01 21 32537340 32537340 G A TIAM1 Missense_Mutation p.A977V 0.57 tolerated(0.44) benign(0.022) TCGA-EK-A2RN-01 21 47831138 47831138 G A PCNT Silent p.L1717L 0.38 TCGA-EK-A2RN-01 22 20103702 20103702 C T TRMT2A Missense_Mutation p.R153K 0.28 tolerated(1) benign(0.001) TCGA-EK-A2RN-01 22 24621551 24621551 C T GGT5 Silent p.E433E 0.18 TCGA-EK-A2RN-01 22 31837859 31837859 G C EIF4ENIF1 Missense_Mutation p.P818A 0.30 tolerated(0.06) probably_damaging(0.994) TCGA-EK-A2RN-01 22 41077812 41077812 C T MCHR1 Silent p.L383L 0.38 TCGA-EK-A2RN-01 22 45996325 45996325 G C FBLN1 Nonstop_Mutation p.*704Sext*38 0.37 TCGA-EK-A2RN-01 2 125232323 125232323 T G CNTNAP5 Missense_Mutation p.F309C 0.50 deleterious(0) probably_damaging(1) TCGA-EK-A2RN-01 2 128903520 128903520 C T UGGT1 Silent p.F665F 0.15 TCGA-EK-A2RN-01 2 153526757 153526757 C T PRPF40A Missense_Mutation p.E540K 0.26 tolerated(0.46) possibly_damaging(0.621) TCGA-EK-A2RN-01 2 166894582 166894582 C T SCN1A Missense_Mutation p.G884S 0.23 deleterious(0) probably_damaging(1) TCGA-EK-A2RN-01 2 179486033 179486033 C T TTN Missense_Mutation p.E15138K 0.39 TCGA-EK-A2RN-01 2 207027539 207027539 G C EEF1B2 Missense_Mutation p.E204Q 0.33 tolerated(0.68) benign(0.279) TCGA-EK-A2RN-01 2 234975918 234975918 G T SPP2 Missense_Mutation p.G184W 0.38 deleterious(0.01) possibly_damaging(0.563) TCGA-EK-A2RN-01 2 239103498 239103498 C T ILKAP Silent p.Q23Q 0.33 TCGA-EK-A2RN-01 2 55074750 55074750 C G EML6 Missense_Mutation p.L393V 0.32 deleterious(0) benign(0.196) TCGA-EK-A2RN-01 2 60685059 60685059 C T BCL11A 3'UTR 0.38 TCGA-EK-A2RN-01 2 64858954 64858954 C T SERTAD2 3'UTR 0.27 TCGA-EK-A2RN-01 3 109129036 109129036 G A RP11-702L6.4 RNA 0.16 TCGA-EK-A2RN-01 3 121376126 121376126 T G HCLS1 Missense_Mutation p.N53T 0.16 deleterious(0) benign(0.403) TCGA-EK-A2RN-01 3 132245079 132245079 C T DNAJC13 Missense_Mutation p.A2112V 0.18 deleterious(0.03) benign(0.26) TCGA-EK-A2RN-01 3 14548392 14548392 C T GRIP2 RNA 0.72 TCGA-EK-A2RN-01 3 157213060 157213060 C T VEPH1 Missense_Mutation p.E27K 0.15 deleterious(0.05) possibly_damaging(0.889) TCGA-EK-A2RN-01 3 170204044 170204044 G A SLC7A14 Silent p.A291A 0.19 TCGA-EK-A2RN-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.52 deleterious(0.02) probably_damaging(0.959) TCGA-EK-A2RN-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.48 tolerated(0.36) benign(0.4) TCGA-EK-A2RN-01 3 185643310 185643310 C T TRA2B Missense_Mutation p.R92K 0.17 deleterious(0.04) unknown(0) TCGA-EK-A2RN-01 3 3215804 3215804 C T CRBN Missense_Mutation p.E106K 0.56 tolerated(0.13) possibly_damaging(0.561) TCGA-EK-A2RN-01 3 45637138 45637138 G A LIMD1 Missense_Mutation p.S256N 0.22 tolerated(0.26) benign(0.002) TCGA-EK-A2RN-01 3 49831402 49831402 G A CDHR4 Silent p.N439N 0.45 TCGA-EK-A2RN-01 3 52283743 52283743 C T PPM1M Silent p.L219L 0.73 TCGA-EK-A2RN-01 4 100047843 100047843 G A ADH4 Silent p.D340D 0.38 TCGA-EK-A2RN-01 4 123131009 123131009 C G KIAA1109 Silent p.V656V 0.43 TCGA-EK-A2RN-01 4 435335 435335 C G ZNF721 3'Flank 0.43 TCGA-EK-A2RN-01 4 71686188 71686188 T C GRSF1 3'UTR 0.38 TCGA-EK-A2RN-01 4 79188084 79188084 G A FRAS1 Missense_Mutation p.G262R 0.62 benign(0.005) TCGA-EK-A2RN-01 4 89013433 89013433 G A ABCG2 Missense_Mutation p.L641F 0.30 tolerated(0.13) benign(0.076) TCGA-EK-A2RN-01 5 137144629 137144629 G C NPY6R RNA 0.19 TCGA-EK-A2RN-01 5 137763729 137763729 G A KDM3B Silent p.V1569V 0.18 TCGA-EK-A2RN-01 5 140187459 140187459 C T PCDHA4 Silent p.L229L 0.19 TCGA-EK-A2RN-01 5 140389529 140389529 C T PCDHAC1 3'UTR 0.16 TCGA-EK-A2RN-01 5 140480132 140480132 C G PCDHB3 5'Flank 0.16 TCGA-EK-A2RN-01 5 140559550 140559550 C G PCDHB8 Silent p.V645V 0.12 TCGA-EK-A2RN-01 5 153855167 153855168 - A HAND1 3'UTR 0.39 TCGA-EK-A2RN-01 5 162910273 162910273 G A HMMR Splice_Site p.X562_splice 0.26 TCGA-EK-A2RN-01 5 174940540 174940540 A C SFXN1 Missense_Mutation p.Q224P 0.25 tolerated(0.1) benign(0.436) TCGA-EK-A2RN-01 5 23526496 23526496 G T PRDM9 Silent p.G433G 0.23 TCGA-EK-A2RN-01 5 24535249 24535249 G A CDH10 Silent p.V262V 0.22 TCGA-EK-A2RN-01 5 68409018 68409018 G C SLC30A5 Missense_Mutation p.D167H 0.08 deleterious(0) probably_damaging(0.988) TCGA-EK-A2RN-01 5 7827500 7827500 G A ADCY2 3'UTR 0.24 TCGA-EK-A2RN-01 5 9629467 9629467 C T TAS2R1 Silent p.A226A 0.23 TCGA-EK-A2RN-01 6 105232900 105232900 G A HACE1 Nonsense_Mutation p.Q457* 0.36 TCGA-EK-A2RN-01 6 109931705 109931705 C T AK9 Missense_Mutation p.D569N 0.30 tolerated(0.18) benign(0.122) TCGA-EK-A2RN-01 6 131602687 131602687 G C AKAP7 Missense_Mutation p.E290Q 0.32 deleterious(0.04) possibly_damaging(0.867) TCGA-EK-A2RN-01 6 132910798 132910798 C T TAAR5 Missense_Mutation p.E10K 0.18 tolerated(0.12) benign(0.002) TCGA-EK-A2RN-01 6 30311366 30311366 G A TRIM39 3'UTR 0.43 TCGA-EK-A2RN-01 6 33266252 33266252 C G RGL2 Missense_Mutation p.E46Q 0.40 tolerated_low_confidence(0.19) benign(0.068) TCGA-EK-A2RN-01 7 102553460 102553460 G A LRRC17 5'UTR 0.40 TCGA-EK-A2RN-01 7 142045605 142045605 C T TRBV4-2 Missense_Mutation p.H45Y 0.11 deleterious(0.01) probably_damaging(0.916) TCGA-EK-A2RN-01 7 149515801 149515801 G A SSPO RNA 0.21 TCGA-EK-A2RN-01 7 150554780 150554780 G A AOC1 Missense_Mutation p.D408N 0.32 tolerated(0.25) benign(0.007) TCGA-EK-A2RN-01 7 23214204 23214204 G C KLHL7 3'UTR 0.27 TCGA-EK-A2RN-01 7 48431550 48431550 C T ABCA13 Missense_Mutation p.S3896F 0.26 probably_damaging(1) TCGA-EK-A2RN-01 7 5541259 5541259 G A FBXL18 Missense_Mutation p.S214L 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A2RN-01 7 73610685 73610685 C G EIF4H 3'UTR 0.39 TCGA-EK-A2RN-01 7 82584937 82584937 C T PCLO Missense_Mutation p.E1778K 0.11 unknown(0) TCGA-EK-A2RN-01 7 84627023 84627023 C T SEMA3D 3'UTR 0.25 TCGA-EK-A2RN-01 8 103564151 103564151 G A ODF1 Missense_Mutation p.G66S 0.21 tolerated_low_confidence(0.19) possibly_damaging(0.531) TCGA-EK-A2RN-01 8 117864207 117864207 C G RAD21 Missense_Mutation p.D484H 0.15 deleterious(0.04) benign(0.001) TCGA-EK-A2RN-01 8 120252534 120252534 C T MAL2 Nonsense_Mutation p.Q145* 0.19 TCGA-EK-A2RN-01 8 120581607 120581607 C G ENPP2 Missense_Mutation p.E693Q 0.14 tolerated(0.07) benign(0.011) TCGA-EK-A2RN-01 8 144811394 144811394 C T FAM83H Missense_Mutation p.E183K 0.15 deleterious(0) probably_damaging(0.967) TCGA-EK-A2RN-01 8 145608279 145608279 C T ADCK5 Intron 0.10 TCGA-EK-A2RN-01 8 21882801 21882801 G C NPM2 Silent p.V14V 0.14 TCGA-EK-A2RN-01 8 24299985 24299985 G A ADAM7 Splice_Site p.X18_splice 0.63 TCGA-EK-A2RN-01 8 43173647 43173647 G C POTEA RNA 0.09 TCGA-EK-A2RN-01 8 65509246 65509246 G A CYP7B1 Nonsense_Mutation p.Q492* 0.15 TCGA-EK-A2RN-01 8 7698576 7698576 G A DEFB104A Missense_Mutation p.D27N 0.15 tolerated_low_confidence(0.3) benign(0.013) TCGA-EK-A2RN-01 8 8185888 8185888 C T SGK223 Missense_Mutation p.V802M 0.31 benign(0.336) TCGA-EK-A2RN-01 8 91013777 91013777 C T DECR1 Silent p.L19L 0.59 TCGA-EK-A2RN-01 8 93023292 93023292 G A RUNX1T1 Missense_Mutation p.H177Y 0.57 deleterious(0) probably_damaging(0.951) TCGA-EK-A2RN-01 9 116813446 116813446 G A ZNF618 3'UTR 0.13 TCGA-EK-A2RN-01 9 117085984 117085984 C T ORM1 Silent p.N52N 0.13 TCGA-EK-A2RN-01 9 131747281 131747281 C T NUP188 Silent p.T688T 0.23 TCGA-EK-A2RN-01 9 133924412 133924412 G A LAMC3 Missense_Mutation p.E509K 0.13 deleterious(0.05) benign(0.014) TCGA-EK-A2RN-01 9 139113694 139113694 C A QSOX2 Missense_Mutation p.V257F 0.22 tolerated(0.6) benign(0.045) TCGA-EK-A2RN-01 9 32631974 32631974 C G TAF1L Missense_Mutation p.E1202Q 0.08 deleterious(0) possibly_damaging(0.682) TCGA-EK-A2RN-01 9 35043829 35043829 G C C9orf131 Missense_Mutation p.E401D 0.30 tolerated(0.57) benign(0.085) TCGA-EK-A2RN-01 9 5127683 5127683 C G JAK2 3'UTR 0.17 TCGA-EK-A2RN-01 9 731244 731244 C T KANK1 Nonsense_Mutation p.Q995* 0.13 TCGA-EK-A2RN-01 9 85881961 85881961 C T FRMD3 Intron 0.21 TCGA-EK-A2RN-01 9 87325597 87325597 G A NTRK2 Nonsense_Mutation p.W158* 0.21 TCGA-EK-A2RN-01 9 95063870 95063870 G C NOL8 Missense_Mutation p.F1046L 0.33 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RN-01 X 105153459 105153459 T C NRK Missense_Mutation p.L610P 0.10 tolerated(0.14) probably_damaging(0.999) TCGA-EK-A2RN-01 X 106845065 106845065 G A FRMPD3 Missense_Mutation p.E1299K 0.11 deleterious(0.01) possibly_damaging(0.783) TCGA-EK-A2RN-01 X 106956818 106956818 A T TSC22D3 3'UTR 0.18 TCGA-EK-A2RN-01 X 107315938 107315938 A C VSIG1 Missense_Mutation p.Q184H 0.16 tolerated(0.28) benign(0.241) TCGA-EK-A2RN-01 X 107936120 107936120 C A COL4A5 Silent p.P1557P 0.18 TCGA-EK-A2RN-01 X 109698652 109698652 C T RGAG1 3'UTR 0.10 TCGA-EK-A2RN-01 X 110494281 110494281 C T CAPN6 Missense_Mutation p.R341H 0.36 tolerated(0.06) probably_damaging(0.954) TCGA-EK-A2RN-01 X 118723425 118723425 C T NKRF Missense_Mutation p.D670N 0.29 tolerated(0.25) benign(0.009) TCGA-EK-A2RN-01 X 118893561 118893561 T A SOWAHD Missense_Mutation p.S311T 0.05 deleterious(0) benign(0.062) TCGA-EK-A2RN-01 X 132351492 132351492 C T TFDP3 Missense_Mutation p.V266I 0.21 tolerated(0.1) benign(0.013) TCGA-EK-A2RN-01 X 134022508 134022508 C T MOSPD1 3'UTR 0.31 TCGA-EK-A2RN-01 X 135630903 135630903 T A VGLL1 Missense_Mutation p.S124T 0.22 tolerated(0.13) possibly_damaging(0.773) TCGA-EK-A2RN-01 X 139014191 139014191 C T ATP11C Missense_Mutation p.R4Q 0.13 tolerated_low_confidence(0.28) benign(0.001) TCGA-EK-A2RN-01 X 140984832 140984832 G A MAGEC3 Missense_Mutation p.E430K 0.34 deleterious(0.03) benign(0.063) TCGA-EK-A2RN-01 X 142795166 142795166 T G SPANXN2 Missense_Mutation p.E171A 0.19 tolerated_low_confidence(0.24) unknown(0) TCGA-EK-A2RN-01 X 142795177 142795177 T C SPANXN2 Silent p.L167L 0.18 TCGA-EK-A2RN-01 X 145075803 145075803 T G MIR890 RNA 0.19 TCGA-EK-A2RN-01 X 146341192 146341192 G A MIR509-3 RNA 0.17 TCGA-EK-A2RN-01 X 15588460 15588460 G C ACE2 Missense_Mutation p.I618M 0.08 deleterious(0) probably_damaging(0.973) TCGA-EK-A2RN-01 X 19973608 19973608 G A CXorf23 Missense_Mutation p.H451Y 0.17 deleterious(0) probably_damaging(0.991) TCGA-EK-A2RN-01 X 24576464 24576464 G A PCYT1B 3'Flank 0.22 TCGA-EK-A2RN-01 X 24579594 24579594 G A PCYT1B 3'Flank 0.51 TCGA-EK-A2RN-01 X 24759593 24759593 A G POLA1 Missense_Mutation p.Q767R 0.27 deleterious(0) probably_damaging(0.996) TCGA-EK-A2RN-01 X 30877610 30877610 C T TAB3 Missense_Mutation p.M32I 0.13 tolerated(0.07) possibly_damaging(0.81) TCGA-EK-A2RN-01 X 43809085 43809085 C A NDP Missense_Mutation p.R121L 0.10 deleterious(0) probably_damaging(0.993) TCGA-EK-A2RN-01 X 54784515 54784515 C T ITIH6 Silent p.V664V 0.17 TCGA-EK-A2RN-01 X 73042704 73042704 C T XIST RNA 0.09 TCGA-EK-A2RN-01 X 73042889 73042889 C G XIST RNA 0.11 TCGA-EK-A2RN-01 X 8763235 8763235 C T FAM9A Missense_Mutation p.E239K 0.08 tolerated_low_confidence(0.06) unknown(0) TCGA-EK-A2RO-01 10 100013465 100013465 G A LOXL4 Silent p.H560H 0.11 TCGA-EK-A2RO-01 10 104592361 104592361 C T CYP17A1 Missense_Mutation p.R349H 0.30 tolerated(0.61) benign(0.003) TCGA-EK-A2RO-01 10 105659861 105659861 C T OBFC1 Missense_Mutation p.R139H 0.39 tolerated(0.12) benign(0.024) TCGA-EK-A2RO-01 10 115374013 115374013 G A NRAP Missense_Mutation p.L1077F 0.27 deleterious(0.02) possibly_damaging(0.641) TCGA-EK-A2RO-01 10 116919962 116919962 C T ATRNL1 Nonsense_Mutation p.Q331* 0.32 TCGA-EK-A2RO-01 10 118225615 118225615 G T PNLIPRP3 Nonsense_Mutation p.E288* 0.33 TCGA-EK-A2RO-01 10 24820871 24820871 G A KIAA1217 Silent p.T1065T 0.33 TCGA-EK-A2RO-01 10 49997929 49997929 C T WDFY4 Missense_Mutation p.S1322L 0.32 deleterious(0.01) benign(0.277) TCGA-EK-A2RO-01 10 5788751 5788751 T G FAM208B Missense_Mutation p.Y1123D 0.48 tolerated(0.06) possibly_damaging(0.736) TCGA-EK-A2RO-01 10 5945069 5945069 C T FBXO18 Nonsense_Mutation p.Q81* 0.35 TCGA-EK-A2RO-01 10 67680320 67680320 A G CTNNA3 Missense_Mutation p.V819A 0.24 deleterious(0) unknown(0) TCGA-EK-A2RO-01 10 70775881 70775881 A G KIAA1279 Silent p.R525R 0.32 TCGA-EK-A2RO-01 10 82280286 82280286 C T TSPAN14 3'UTR 0.27 TCGA-EK-A2RO-01 10 90490853 90490853 G A LIPK Missense_Mutation p.V113M 0.38 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RO-01 10 91066443 91066443 C T IFIT2 Missense_Mutation p.P244S 0.31 tolerated(0.22) benign(0.382) TCGA-EK-A2RO-01 11 102738746 102738746 C T MMP12 RNA 0.22 TCGA-EK-A2RO-01 11 125708251 125708251 G C PATE4 Missense_Mutation p.E76Q 0.50 tolerated(0.39) possibly_damaging(0.661) TCGA-EK-A2RO-01 11 18723748 18723748 A G TMEM86A 3'UTR 0.22 TCGA-EK-A2RO-01 11 30915926 30915926 G A DCDC1 Nonsense_Mutation p.R1588* 0.31 TCGA-EK-A2RO-01 11 34189500 34189500 C T ABTB2 Missense_Mutation p.E535K 0.38 deleterious(0.01) probably_damaging(0.979) TCGA-EK-A2RO-01 11 45204615 45204615 G A PRDM11 Missense_Mutation p.G143S 0.32 deleterious(0.01) probably_damaging(1) TCGA-EK-A2RO-01 11 5068144 5068144 C A OR52J3 Missense_Mutation p.A130D 0.32 tolerated(0.21) benign(0.002) TCGA-EK-A2RO-01 11 6740009 6740009 C T GVINP1 RNA 0.38 TCGA-EK-A2RO-01 11 68370898 68370898 C T PPP6R3 Silent p.G796G 0.51 TCGA-EK-A2RO-01 11 7111523 7111523 G C RBMXL2 Missense_Mutation p.R391T 0.39 deleterious(0) benign(0.227) TCGA-EK-A2RO-01 11 89059880 89059880 T C NOX4 3'UTR 0.41 TCGA-EK-A2RO-01 12 109625846 109625846 C T ACACB Missense_Mutation p.R675W 0.32 deleterious(0) possibly_damaging(0.893) TCGA-EK-A2RO-01 12 3782683 3782683 G T EFCAB4B Missense_Mutation p.F200L 0.41 tolerated(0.2) benign(0.023) TCGA-EK-A2RO-01 12 4409469 4409469 G A CCND2 3'UTR 0.34 TCGA-EK-A2RO-01 12 50571413 50571413 C T LIMA1 Missense_Mutation p.D573N 0.20 deleterious(0.03) benign(0.117) TCGA-EK-A2RO-01 12 52760950 52760950 G A KRT85 Silent p.F80F 0.53 TCGA-EK-A2RO-01 12 66605255 66605255 C G IRAK3 Missense_Mutation p.Q156E 0.26 tolerated(0.47) benign(0.004) TCGA-EK-A2RO-01 12 68619010 68619010 A G IL26 Silent p.F94F 0.40 TCGA-EK-A2RO-01 12 70048836 70048836 C G BEST3 Missense_Mutation p.D620H 0.42 deleterious_low_confidence(0.01) benign(0.006) TCGA-EK-A2RO-01 12 70946731 70946731 G T PTPRB Missense_Mutation p.S1738Y 0.18 deleterious(0) probably_damaging(0.994) TCGA-EK-A2RO-01 12 75892666 75892666 T C GLIPR1 Missense_Mutation p.F237L 0.33 tolerated(0.23) benign(0.07) TCGA-EK-A2RO-01 12 97073515 97073515 C T C12orf55 Missense_Mutation p.L1901F 0.39 deleterious(0.02) possibly_damaging(0.736) TCGA-EK-A2RO-01 13 32367059 32367059 C T RXFP2 Silent p.V540V 0.69 TCGA-EK-A2RO-01 13 39544498 39544498 G A STOML3 Nonsense_Mutation p.Q114* 0.76 TCGA-EK-A2RO-01 13 50106511 50106512 - A RCBTB1 3'UTR 0.59 TCGA-EK-A2RO-01 13 52025274 52025274 C T INTS6 Missense_Mutation p.E76K 0.71 deleterious(0) probably_damaging(0.997) TCGA-EK-A2RO-01 13 78472177 78472177 C T EDNRB 3'UTR 0.67 TCGA-EK-A2RO-01 14 23445919 23445919 G A AJUBA Nonsense_Mutation p.R371* 0.26 TCGA-EK-A2RO-01 14 23528582 23528582 G A ACIN1 Silent p.A1267A 0.05 TCGA-EK-A2RO-01 14 24653559 24653559 G A IPO4 Nonsense_Mutation p.Q568* 0.46 TCGA-EK-A2RO-01 14 33292524 33292524 G C AKAP6 Missense_Mutation p.E1835D 0.33 tolerated(0.11) benign(0.009) TCGA-EK-A2RO-01 15 101565148 101565148 C G LRRK1 Silent p.L736L 0.31 TCGA-EK-A2RO-01 15 102346600 102346600 G C OR4F6 Missense_Mutation p.Q226H 0.25 tolerated_low_confidence(0.13) benign(0.03) TCGA-EK-A2RO-01 15 68120237 68120237 G A SKOR1 Missense_Mutation p.A631T 0.19 deleterious_low_confidence(0.03) benign(0.022) TCGA-EK-A2RO-01 15 79763930 79763930 C T KIAA1024 3'UTR 0.43 TCGA-EK-A2RO-01 15 86697674 86697674 A G AGBL1 Silent p.G46G 0.28 TCGA-EK-A2RO-01 16 14026059 14026059 G A ERCC4 Missense_Mutation p.R340Q 0.33 deleterious(0.01) probably_damaging(0.941) TCGA-EK-A2RO-01 16 20682921 20682921 C G ACSM1 Silent p.G228G 0.32 TCGA-EK-A2RO-01 16 20870891 20870891 A C DCUN1D3 3'UTR 0.38 TCGA-EK-A2RO-01 16 24826503 24826503 C T TNRC6A Missense_Mutation p.P1570S 0.33 tolerated(1) benign(0.395) TCGA-EK-A2RO-01 16 30615285 30615285 A G ZNF689 3'UTR 0.30 TCGA-EK-A2RO-01 16 31142602 31142602 G T KAT8 3'UTR 0.36 TCGA-EK-A2RO-01 16 3490819 3490819 C A ZNF597 Missense_Mutation p.A50S 0.35 deleterious(0.03) benign(0.009) TCGA-EK-A2RO-01 16 67397516 67397516 C A LRRC36 Missense_Mutation p.P201T 0.07 tolerated_low_confidence(0.08) possibly_damaging(0.686) TCGA-EK-A2RO-01 17 27900739 27900739 A C GIT1 3'UTR 0.27 TCGA-EK-A2RO-01 17 33767627 33767627 T C SLFN13 Missense_Mutation p.Y894C 0.39 deleterious(0) probably_damaging(0.959) TCGA-EK-A2RO-01 17 36093702 36093702 G A HNF1B Silent p.S219S 0.40 TCGA-EK-A2RO-01 17 36638375 36638375 G A ARHGAP23 Silent p.T914T 0.40 TCGA-EK-A2RO-01 17 39253891 39253891 C T KRTAP4-8 Missense_Mutation p.C149Y 0.38 deleterious(0) unknown(0) TCGA-EK-A2RO-01 17 39520038 39520038 A G KRT33B 3'UTR 0.37 TCGA-EK-A2RO-01 17 40765904 40765904 G A TUBG1 Missense_Mutation p.R244H 0.31 deleterious(0) probably_damaging(0.986) TCGA-EK-A2RO-01 17 45405719 45405719 G C ITGB3 Missense_Mutation p.D785H 0.42 tolerated_low_confidence(0.06) unknown(0) TCGA-EK-A2RO-01 17 73726984 73726984 C G ITGB4 Nonsense_Mutation p.S344* 0.36 TCGA-EK-A2RO-01 17 7479841 7479841 G T EIF4A1 Splice_Site p.X116_splice 0.19 TCGA-EK-A2RO-01 17 76488833 76488833 G A DNAH17 Silent p.L2127L 0.34 TCGA-EK-A2RO-01 18 12125918 12125918 C T ANKRD62 Nonsense_Mutation p.Q700* 0.23 TCGA-EK-A2RO-01 18 57020489 57020489 C G LMAN1 Missense_Mutation p.R195P 0.16 deleterious(0) probably_damaging(1) TCGA-EK-A2RO-01 18 65180658 65180658 G A DSEL Silent p.L406L 0.68 TCGA-EK-A2RO-01 19 10959203 10959203 C T C19orf38 Missense_Mutation p.L7F 0.31 tolerated(0.41) benign(0.178) TCGA-EK-A2RO-01 19 13227106 13227106 C T TRMT1 Silent p.A36A 0.34 TCGA-EK-A2RO-01 19 1826912 1826912 C T REXO1 Missense_Mutation p.V626I 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-EK-A2RO-01 19 40366170 40366170 C T FCGBP Silent p.A4688A 0.31 TCGA-EK-A2RO-01 19 49472244 49472244 C G GYS1 3'UTR 0.33 TCGA-EK-A2RO-01 19 53741496 53741496 C G ZNF677 Missense_Mutation p.D162H 0.41 deleterious(0.01) possibly_damaging(0.575) TCGA-EK-A2RO-01 19 56904636 56904636 G T ZNF582 Intron 0.33 TCGA-EK-A2RO-01 1 110032595 110032595 T C ATXN7L2 Missense_Mutation p.C361R 0.38 tolerated(0.48) benign(0.058) TCGA-EK-A2RO-01 1 1111303 1111303 C T TTLL10 Intron 0.22 TCGA-EK-A2RO-01 1 148251858 148251858 G A NBPF20 3'UTR 0.32 TCGA-EK-A2RO-01 1 149876728 149876728 C T SV2A Silent p.L689L 0.31 TCGA-EK-A2RO-01 1 15863003 15863003 G A DNAJC16 Missense_Mutation p.D90N 0.17 deleterious(0) probably_damaging(1) TCGA-EK-A2RO-01 1 161134399 161134399 C T USP21 Missense_Mutation p.L461F 0.32 deleterious(0) probably_damaging(0.99) TCGA-EK-A2RO-01 1 162748502 162748502 C T DDR2 Nonsense_Mutation p.R806* 0.39 TCGA-EK-A2RO-01 1 167097688 167097688 G A DUSP27 Missense_Mutation p.R1107K 0.31 tolerated(0.19) benign(0.004) TCGA-EK-A2RO-01 1 17083674 17083674 G C MST1L RNA 0.06 TCGA-EK-A2RO-01 1 185259985 185259985 G C SWT1 3'UTR 0.40 TCGA-EK-A2RO-01 1 186273264 186273264 C T PRG4 Missense_Mutation p.S115F 0.41 probably_damaging(0.985) TCGA-EK-A2RO-01 1 198704312 198704314 TGT - PTPRC In_Frame_Del p.V781del 0.37 TCGA-EK-A2RO-01 1 203143635 203143635 C T MYBPH Missense_Mutation p.R144H 0.33 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RO-01 1 207039699 207039699 A G IL20 Missense_Mutation p.Q72R 0.40 tolerated(0.19) benign(0.186) TCGA-EK-A2RO-01 1 212799050 212799050 G T FAM71A Missense_Mutation p.E277D 0.33 tolerated(0.59) benign(0.107) TCGA-EK-A2RO-01 1 21929391 21929391 C T RAP1GAP Missense_Mutation p.G546R 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-EK-A2RO-01 1 226822561 226822561 G C ITPKB Missense_Mutation p.I884M 0.17 deleterious(0.03) probably_damaging(0.995) TCGA-EK-A2RO-01 1 248084323 248084323 G C OR2T8 Missense_Mutation p.E2Q 0.32 tolerated(0.06) benign(0.049) TCGA-EK-A2RO-01 1 248551096 248551096 C T OR2T6 Missense_Mutation p.L63F 0.32 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RO-01 1 28975147 28975147 C T RNU11 RNA 0.28 TCGA-EK-A2RO-01 1 32196648 32196648 G A BAI2 Missense_Mutation p.P1378L 0.18 tolerated(0.25) possibly_damaging(0.557) TCGA-EK-A2RO-01 1 37946015 37946015 G A ZC3H12A Missense_Mutation p.D190N 0.23 deleterious(0) probably_damaging(0.998) TCGA-EK-A2RO-01 1 39802262 39802262 C T MACF1 Intron 0.20 TCGA-EK-A2RO-01 1 66036280 66036280 G C LEPR Missense_Mutation p.K55N 0.24 tolerated(0.33) benign(0.005) TCGA-EK-A2RO-01 1 67861644 67861644 G A IL12RB2 Missense_Mutation p.E821K 0.22 deleterious(0.01) benign(0.269) TCGA-EK-A2RO-01 20 31025519 31025519 A T ASXL1 3'UTR 0.29 TCGA-EK-A2RO-01 20 44563346 44563346 G C PCIF1 5'UTR 0.31 TCGA-EK-A2RO-01 20 48909282 48909282 G A RP11-290F20.1 RNA 0.27 TCGA-EK-A2RO-01 20 8862924 8862924 T C PLCB1 3'UTR 0.11 TCGA-EK-A2RO-01 21 35255907 35255907 C T ITSN1 Silent p.D1536D 0.30 TCGA-EK-A2RO-01 21 46925806 46925806 G A COL18A1 Missense_Mutation p.E1228K 0.38 probably_damaging(0.921) TCGA-EK-A2RO-01 21 47558551 47558551 C T FTCD Silent p.A438A 0.26 TCGA-EK-A2RO-01 22 20378434 20378434 G A AC023490.2 RNA 0.31 TCGA-EK-A2RO-01 22 22893428 22893428 C T PRAME Silent p.L35L 0.25 TCGA-EK-A2RO-01 22 23135470 23135470 C T IGLV2-11 Missense_Mutation p.S111L 0.26 deleterious_low_confidence(0.01) benign(0.397) TCGA-EK-A2RO-01 22 37764002 37764002 G A ELFN2 3'UTR 0.25 TCGA-EK-A2RO-01 22 40061971 40061971 G A CACNA1I Missense_Mutation p.R1355H 0.60 deleterious(0.01) possibly_damaging(0.812) TCGA-EK-A2RO-01 22 40415273 40415273 C T FAM83F Silent p.D197D 0.27 TCGA-EK-A2RO-01 22 45278192 45278192 C T PHF21B 3'UTR 0.45 TCGA-EK-A2RO-01 2 111907693 111907693 G A BCL2L11 Missense_Mutation p.G156E 0.58 deleterious(0) probably_damaging(1) TCGA-EK-A2RO-01 2 128409567 128409567 C T GPR17 3'UTR 0.52 TCGA-EK-A2RO-01 2 136872498 136872498 G A CXCR4 Nonsense_Mutation p.R338* 0.31 TCGA-EK-A2RO-01 2 176960006 176960006 G A HOXD13 3'UTR 0.29 TCGA-EK-A2RO-01 2 178086356 178086356 G A HNRNPA3 3'Flank 0.31 TCGA-EK-A2RO-01 2 186671174 186671174 T C FSIP2 Missense_Mutation p.V5803A 0.50 benign(0.001) TCGA-EK-A2RO-01 2 201756712 201756712 G A NIF3L1 Missense_Mutation p.V16I 0.43 tolerated_low_confidence(0.43) benign(0.001) TCGA-EK-A2RO-01 2 220473076 220473076 G T STK11IP Missense_Mutation p.E520D 0.26 tolerated(0.35) possibly_damaging(0.59) TCGA-EK-A2RO-01 2 75107455 75107455 C T HK2 Silent p.L443L 0.41 TCGA-EK-A2RO-01 2 77744997 77744997 C G LRRTM4 Intron 0.40 TCGA-EK-A2RO-01 2 77745633 77745633 C T LRRTM4 Missense_Mutation p.M454I 0.27 tolerated(0.25) benign(0.005) TCGA-EK-A2RO-01 3 139063000 139063000 C G MRPS22 Missense_Mutation p.F44L 0.62 tolerated_low_confidence(0.81) benign(0.001) TCGA-EK-A2RO-01 3 154145322 154145322 G A GPR149 Missense_Mutation p.A386V 0.61 deleterious(0.01) benign(0.241) TCGA-EK-A2RO-01 3 157296203 157296203 C T C3orf55 Intron 0.38 TCGA-EK-A2RO-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.62 deleterious(0.02) probably_damaging(0.959) TCGA-EK-A2RO-01 3 9739395 9739405 ATCAGTGGACC - MTMR14 Frame_Shift_Del p.V540Pfs*41 0.27 TCGA-EK-A2RO-01 3 99509748 99509748 G A COL8A1 Missense_Mutation p.M74I 0.22 tolerated_low_confidence(0.21) unknown(0) TCGA-EK-A2RO-01 4 114281990 114281990 G A ANK2 Missense_Mutation p.E3565K 0.43 possibly_damaging(0.46) TCGA-EK-A2RO-01 4 119259365 119259365 C G PRSS12 Missense_Mutation p.D203H 0.45 deleterious(0) probably_damaging(0.938) TCGA-EK-A2RO-01 4 119738426 119738426 G T SEC24D Missense_Mutation p.N130K 0.28 tolerated(0.26) benign(0.118) TCGA-EK-A2RO-01 4 144141614 144141614 G C USP38 3'UTR 0.29 TCGA-EK-A2RO-01 4 159592830 159592830 G A C4orf46 Missense_Mutation p.P42S 0.34 tolerated_low_confidence(0.35) benign(0.003) TCGA-EK-A2RO-01 4 80827443 80827443 G C ANTXR2 3'UTR 0.71 TCGA-EK-A2RO-01 4 94006335 94006335 C G GRID2 Nonsense_Mutation p.S145* 0.27 TCGA-EK-A2RO-01 4 981931 981931 G A SLC26A1 3'UTR 0.27 TCGA-EK-A2RO-01 5 113698719 113698719 G A KCNN2 Missense_Mutation p.G83R 0.38 tolerated_low_confidence(0.25) benign(0.329) TCGA-EK-A2RO-01 5 140712541 140712541 C T PCDHGA1 Missense_Mutation p.R764W 0.27 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-EK-A2RO-01 5 140750824 140750824 T C PCDHGB3 Missense_Mutation p.V288A 0.42 tolerated(0.78) benign(0.006) TCGA-EK-A2RO-01 5 161495040 161495040 C T GABRG2 Missense_Mutation p.S12L 0.20 deleterious_low_confidence(0) benign(0.001) TCGA-EK-A2RO-01 5 7870902 7870902 G A MTRR Missense_Mutation p.E26K 0.43 deleterious(0.04) benign(0.054) TCGA-EK-A2RO-01 5 79335943 79335943 C T THBS4 Silent p.G44G 0.16 TCGA-EK-A2RO-01 6 117240424 117240424 C G RFX6 Missense_Mutation p.L383V 0.70 deleterious(0.03) possibly_damaging(0.881) TCGA-EK-A2RO-01 6 170627030 170627030 C T FAM120B Silent p.I184I 0.75 TCGA-EK-A2RO-01 6 31539908 31539908 C T LTA 5'UTR 0.79 TCGA-EK-A2RO-01 7 100086224 100086224 G A NYAP1 Missense_Mutation p.A294T 0.23 tolerated(0.54) benign(0.035) TCGA-EK-A2RO-01 7 100284015 100284015 G A GIGYF1 Missense_Mutation p.R246W 0.32 deleterious(0) unknown(0) TCGA-EK-A2RO-01 7 131848964 131848964 G A PLXNA4 Silent p.G1479G 0.28 TCGA-EK-A2RO-01 7 134730620 134730620 C T AGBL3 Missense_Mutation p.S600L 0.30 tolerated(0.11) possibly_damaging(0.676) TCGA-EK-A2RO-01 7 137563971 137563971 C T CREB3L2 3'UTR 0.36 TCGA-EK-A2RO-01 7 27282448 27282448 C T EVX1 5'UTR 0.40 TCGA-EK-A2RO-01 7 48349706 48349706 C T ABCA13 Nonsense_Mutation p.R3162* 0.15 TCGA-EK-A2RO-01 7 73097088 73097088 G A DNAJC30 Silent p.I222I 0.34 TCGA-EK-A2RO-01 8 22974403 22974403 G A TNFRSF10C Missense_Mutation p.M213I 0.58 deleterious_low_confidence(0.01) unknown(0) TCGA-EK-A2RO-01 8 56698850 56698850 G T TGS1 Missense_Mutation p.K131N 0.29 tolerated(0.13) possibly_damaging(0.632) TCGA-EK-A2RO-01 9 108128639 108128639 G C SLC44A1 Missense_Mutation p.A475P 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A2RO-01 9 109689443 109689443 G A ZNF462 Missense_Mutation p.E1084K 0.62 possibly_damaging(0.55) TCGA-EK-A2RO-01 9 139301658 139301658 G A SDCCAG3 Missense_Mutation p.A253V 0.29 tolerated(0.13) benign(0.031) TCGA-EK-A2RO-01 9 139412684 139412684 C T NOTCH1 Missense_Mutation p.C387Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RO-01 9 97216237 97216237 C T HIATL1 Intron 0.34 TCGA-EK-A2RO-01 X 100910679 100910679 G C ARMCX2 Missense_Mutation p.F632L 0.23 tolerated(0.34) unknown(0) TCGA-EK-A2RO-01 X 10174519 10174519 C A CLCN4 Missense_Mutation p.P226Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-EK-A2RO-01 X 10174520 10174520 G C CLCN4 Silent p.P226P 0.25 TCGA-EK-A2RO-01 X 11157357 11157357 C T ARHGAP6 Missense_Mutation p.E851K 0.29 tolerated_low_confidence(0.15) benign(0.23) TCGA-EK-A2RO-01 X 128902410 128902410 G C XPNPEP2 Missense_Mutation p.W658C 0.27 tolerated_low_confidence(0.12) benign(0.001) TCGA-EK-A2RO-01 X 131762918 131762918 T C HS6ST2 Missense_Mutation p.N424S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-EK-A2RO-01 X 132090974 132090974 G A HS6ST2 Missense_Mutation p.P270L 0.45 deleterious(0) probably_damaging(1) TCGA-EK-A2RO-01 X 135106633 135106633 T C SLC9A6 Missense_Mutation p.L536S 0.23 deleterious(0) benign(0.287) TCGA-EK-A2RO-01 X 135291510 135291510 G A FHL1 Missense_Mutation p.R266Q 0.23 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-EK-A2RO-01 X 27766066 27766066 C T DCAF8L2 Missense_Mutation p.R352W 0.27 deleterious(0.03) benign(0.14) TCGA-EK-A2RO-01 X 41416352 41416352 C T CASK Missense_Mutation p.R580K 0.20 tolerated_low_confidence(1) benign(0) TCGA-EK-A2RO-01 X 50336295 50336295 C A SHROOM4 3'UTR 0.06 TCGA-EK-A2RO-01 X 50337904 50337904 C A SHROOM4 3'UTR 0.21 TCGA-EK-A2RO-01 X 53253976 53253976 C G KDM5C Silent p.A32A 0.20 TCGA-EK-A2RO-01 X 73044562 73044562 G A XIST RNA 0.22 TCGA-EK-A2RO-01 X 77289250 77289250 G T ATP7A Missense_Mutation p.V1148F 0.43 deleterious(0.04) benign(0.014) TCGA-EK-A2RO-01 X 84329357 84329357 A G APOOL Silent p.E226E 0.38 TCGA-EK-A2RO-01 X 91133832 91133832 A G PCDH11X Missense_Mutation p.I865V 0.07 tolerated(0.55) benign(0.052) TCGA-EK-A3GJ-01 10 106075739 106075739 G A ITPRIP Missense_Mutation p.P24L 0.53 deleterious(0) possibly_damaging(0.73) TCGA-EK-A3GJ-01 10 118630744 118630744 G C ENO4 Missense_Mutation p.E111Q 0.38 tolerated(0.08) benign(0.008) TCGA-EK-A3GJ-01 10 120920455 120920455 G T SFXN4 Missense_Mutation p.N102K 0.32 tolerated(1) benign(0.017) TCGA-EK-A3GJ-01 10 13234536 13234536 G C MCM10 Missense_Mutation p.M572I 0.30 tolerated(0.33) benign(0.013) TCGA-EK-A3GJ-01 10 134188813 134188813 C T LRRC27 3'UTR 0.35 TCGA-EK-A3GJ-01 10 20105641 20105641 C T PLXDC2 5'UTR 0.43 TCGA-EK-A3GJ-01 10 26802469 26802469 G A APBB1IP Silent p.E231E 0.36 TCGA-EK-A3GJ-01 10 43654206 43654206 C G CSGALNACT2 Silent p.L235L 0.52 TCGA-EK-A3GJ-01 10 46147460 46147460 C T ZFAND4 Silent p.L94L 0.31 TCGA-EK-A3GJ-01 10 51050022 51050022 C G PARG Missense_Mutation p.E354Q 0.35 tolerated(0.22) possibly_damaging(0.771) TCGA-EK-A3GJ-01 10 52587925 52587925 C G A1CF Missense_Mutation p.E253D 0.33 tolerated(0.36) probably_damaging(0.997) TCGA-EK-A3GJ-01 10 75883414 75883414 C G AP3M1 3'UTR 0.50 TCGA-EK-A3GJ-01 10 76781645 76781645 C T KAT6B Missense_Mutation p.R1010W 0.40 probably_damaging(0.937) TCGA-EK-A3GJ-01 10 81272687 81272687 C G EIF5AL1 Missense_Mutation p.I94M 0.38 deleterious(0.02) benign(0.431) TCGA-EK-A3GJ-01 10 81272949 81272949 C G EIF5AL1 3'UTR 0.39 TCGA-EK-A3GJ-01 10 82279344 82279344 C G TSPAN14 3'UTR 0.42 TCGA-EK-A3GJ-01 10 98105599 98105599 G C OPALIN 3'UTR 0.26 TCGA-EK-A3GJ-01 11 101981896 101981896 G A YAP1 Missense_Mutation p.R106Q 0.19 deleterious(0) benign(0.245) TCGA-EK-A3GJ-01 11 118272366 118272366 C T RP11-770J1.5 Missense_Mutation p.R6K 0.70 benign(0.146) TCGA-EK-A3GJ-01 11 12244161 12244161 C T MICAL2 Intron 0.53 TCGA-EK-A3GJ-01 11 123476185 123476185 C T GRAMD1B Missense_Mutation p.S298L 0.46 tolerated(0.08) benign(0.036) TCGA-EK-A3GJ-01 11 27678712 27678712 C G BDNF 3'UTR 0.27 TCGA-EK-A3GJ-01 11 30031937 30031938 - CA KCNA4 3'UTR 0.39 TCGA-EK-A3GJ-01 11 36424918 36424918 G A PRR5L Missense_Mutation p.E79K 0.16 deleterious(0.05) benign(0.221) TCGA-EK-A3GJ-01 11 40137708 40137708 C T LRRC4C Silent p.Q45Q 0.39 TCGA-EK-A3GJ-01 11 61560059 61560059 C T TMEM258 5'UTR 0.63 TCGA-EK-A3GJ-01 11 63682379 63682379 C G RCOR2 Missense_Mutation p.E105Q 0.62 deleterious(0.03) probably_damaging(0.992) TCGA-EK-A3GJ-01 11 63756108 63756108 G C OTUB1 Intron 0.24 TCGA-EK-A3GJ-01 11 64010730 64010730 C A FKBP2 Silent p.V77V 0.51 TCGA-EK-A3GJ-01 11 64011537 64011537 C G FKBP2 3'UTR 0.56 TCGA-EK-A3GJ-01 11 6530458 6530458 C T DNHD1 Silent p.L397L 0.46 TCGA-EK-A3GJ-01 11 65634130 65634130 G A EFEMP2 3'UTR 0.27 TCGA-EK-A3GJ-01 11 76928260 76928260 G C GDPD4 3'UTR 0.14 TCGA-EK-A3GJ-01 11 86661728 86661728 C A FZD4 3'UTR 0.23 TCGA-EK-A3GJ-01 11 95546186 95546186 C G CEP57 Missense_Mutation p.S98C 0.41 deleterious(0) probably_damaging(0.99) TCGA-EK-A3GJ-01 12 107126766 107126766 G A RFX4 Silent p.S521S 0.48 TCGA-EK-A3GJ-01 12 109185927 109185927 G A SSH1 Intron 0.63 TCGA-EK-A3GJ-01 12 121868153 121868153 C T KDM2B Missense_Mutation p.E1317K 0.49 deleterious(0) probably_damaging(0.986) TCGA-EK-A3GJ-01 12 12274032 12274032 G C LRP6 3'UTR 0.45 TCGA-EK-A3GJ-01 12 123187570 123187570 A T HCAR2 Nonsense_Mutation p.Y87* 0.44 TCGA-EK-A3GJ-01 12 124265759 124265759 C G DNAH10 Missense_Mutation p.H191D 0.37 benign(0.001) TCGA-EK-A3GJ-01 12 125396957 125396957 C G UBC Missense_Mutation p.R454T 0.32 deleterious(0.02) benign(0.261) TCGA-EK-A3GJ-01 12 40668470 40668470 C T LRRK2 Missense_Mutation p.S581F 0.38 tolerated(0.09) possibly_damaging(0.602) TCGA-EK-A3GJ-01 12 48477376 48477376 C T SENP1 Missense_Mutation p.E184K 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-EK-A3GJ-01 12 48866842 48866842 G A ANP32D Silent p.%3D 0.45 TCGA-EK-A3GJ-01 12 49364236 49364236 C T WNT10B Intron 0.38 TCGA-EK-A3GJ-01 12 50474444 50474444 G C ASIC1 Missense_Mutation p.G457R 0.32 tolerated_low_confidence(0.23) probably_damaging(0.979) TCGA-EK-A3GJ-01 12 51319179 51319179 G C METTL7A Missense_Mutation p.E120Q 0.37 tolerated(0.09) possibly_damaging(0.734) TCGA-EK-A3GJ-01 12 52435661 52435661 G A NR4A1 5'UTR 0.43 TCGA-EK-A3GJ-01 12 56333286 56333286 C G DGKA Missense_Mutation p.L228V 0.40 tolerated(0.63) benign(0.172) TCGA-EK-A3GJ-01 12 57039769 57039769 G C ATP5B 5'UTR 0.39 TCGA-EK-A3GJ-01 12 57978515 57978515 G A KIF5A 3'UTR 0.45 TCGA-EK-A3GJ-01 12 64383826 64383826 G A SRGAP1 Missense_Mutation p.E134K 0.44 deleterious(0) benign(0.314) TCGA-EK-A3GJ-01 12 93167243 93167243 C G EEA1 3'UTR 0.35 TCGA-EK-A3GJ-01 12 9316798 9316798 C T PZP Missense_Mutation p.E849K 0.36 tolerated(0.14) benign(0.004) TCGA-EK-A3GJ-01 13 33679681 33679681 G A STARD13 3'UTR 0.22 TCGA-EK-A3GJ-01 13 76379796 76379796 G C LMO7 Missense_Mutation p.D133H 0.32 tolerated(0.06) benign(0.078) TCGA-EK-A3GJ-01 14 101005410 101005410 G A BEGAIN Silent p.I226I 0.34 TCGA-EK-A3GJ-01 14 105421849 105421849 G A AHNAK2 Missense_Mutation p.S146L 0.38 possibly_damaging(0.896) TCGA-EK-A3GJ-01 14 106780919 106780919 C T IGHV4-28 Silent p.L9L 0.38 TCGA-EK-A3GJ-01 14 21852049 21852049 C T SUPT16H Missense_Mutation p.R13Q 0.31 deleterious(0) probably_damaging(0.987) TCGA-EK-A3GJ-01 14 24036583 24036583 C T AP1G2 5'UTR 0.40 TCGA-EK-A3GJ-01 14 24877477 24877477 G C NYNRIN Missense_Mutation p.D201H 0.42 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-EK-A3GJ-01 14 34270072 34270072 C T NPAS3 Silent p.F853F 0.51 TCGA-EK-A3GJ-01 14 51194364 51194364 C T NIN Intron 0.41 TCGA-EK-A3GJ-01 14 66096237 66096237 C G FUT8 Silent p.L170L 0.61 TCGA-EK-A3GJ-01 14 80971268 80971268 A C CEP128 Missense_Mutation p.F1056L 0.35 tolerated(1) benign(0.011) TCGA-EK-A3GJ-01 14 81408019 81408019 G A CEP128 5'UTR 0.34 TCGA-EK-A3GJ-01 15 26789109 26789109 C G GABRB3 3'UTR 0.41 TCGA-EK-A3GJ-01 15 29996371 29996371 G A TJP1 Intron 0.14 TCGA-EK-A3GJ-01 15 30376977 30376977 A C GOLGA8J Missense_Mutation p.K18Q 0.15 deleterious(0) probably_damaging(0.938) TCGA-EK-A3GJ-01 15 41371977 41371977 C G INO80 Missense_Mutation p.E351D 0.24 tolerated(0.67) benign(0.017) TCGA-EK-A3GJ-01 15 43028186 43028186 G A CDAN1 Silent p.I220I 0.30 TCGA-EK-A3GJ-01 15 44888480 44888480 G A SPG11 Missense_Mutation p.S1412L 0.47 tolerated(0.69) benign(0.181) TCGA-EK-A3GJ-01 15 50786321 50786321 G T USP8 Missense_Mutation p.M834I 0.38 tolerated(0.27) possibly_damaging(0.851) TCGA-EK-A3GJ-01 15 60639596 60639596 C T ANXA2 3'UTR 0.53 TCGA-EK-A3GJ-01 15 65942798 65942798 G A SLC24A1 Missense_Mutation p.E771K 0.41 benign(0.018) TCGA-EK-A3GJ-01 15 67524189 67524189 C T AAGAB Silent p.L166L 0.29 TCGA-EK-A3GJ-01 15 81234256 81234256 C G KIAA1199 Silent p.G1158G 0.45 TCGA-EK-A3GJ-01 15 85113845 85113845 G C UBE2Q2P1 RNA 0.17 TCGA-EK-A3GJ-01 15 90129000 90129000 C G TICRR Missense_Mutation p.S413C 0.29 deleterious(0) probably_damaging(0.99) TCGA-EK-A3GJ-01 15 90444992 90444992 G A C15orf38 3'UTR 0.21 TCGA-EK-A3GJ-01 15 90771715 90771715 G A SEMA4B Missense_Mutation p.R785Q 0.56 tolerated(0.06) benign(0.059) TCGA-EK-A3GJ-01 15 91009278 91009278 G C IQGAP1 Missense_Mutation p.G608R 0.20 tolerated(0.19) benign(0.002) TCGA-EK-A3GJ-01 16 15835413 15835413 C T MYH11 Silent p.E929E 0.46 TCGA-EK-A3GJ-01 16 4812281 4812281 G A ZNF500 Silent p.A218A 0.23 TCGA-EK-A3GJ-01 16 48244925 48244925 G A ABCC11 Silent p.L514L 0.40 TCGA-EK-A3GJ-01 16 4925053 4925053 C T UBN1 Missense_Mutation p.S881F 0.59 deleterious_low_confidence(0.02) benign(0.051) TCGA-EK-A3GJ-01 16 56396402 56396402 G A AMFR 3'UTR 0.43 TCGA-EK-A3GJ-01 16 57496611 57496611 G A POLR2C 5'UTR 0.36 TCGA-EK-A3GJ-01 16 67006823 67006823 C G CES3 Missense_Mutation p.I529M 0.31 deleterious(0) probably_damaging(0.954) TCGA-EK-A3GJ-01 16 73077 73077 G A WASH4P 5'Flank 0.25 TCGA-EK-A3GJ-01 16 83842329 83842329 G C HSBP1 Missense_Mutation p.M30I 0.45 tolerated(0.05) benign(0.047) TCGA-EK-A3GJ-01 16 88037938 88037938 C T BANP Missense_Mutation p.R126W 0.37 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-EK-A3GJ-01 17 27614309 27614309 C G NUFIP2 Missense_Mutation p.E235Q 0.43 deleterious(0.01) probably_damaging(0.91) TCGA-EK-A3GJ-01 17 28614948 28614948 G A BLMH Silent p.F113F 0.46 TCGA-EK-A3GJ-01 17 33318723 33318723 G A LIG3 Missense_Mutation p.E359K 0.30 deleterious(0.03) benign(0.199) TCGA-EK-A3GJ-01 17 33353531 33353531 C G RFFL Missense_Mutation p.Q14H 0.36 tolerated(0.05) benign(0.009) TCGA-EK-A3GJ-01 17 38340914 38340914 G A RAPGEFL1 Missense_Mutation p.E67K 0.42 tolerated(0.34) possibly_damaging(0.704) TCGA-EK-A3GJ-01 17 40025361 40025361 C T ACLY Silent p.L1023L 0.38 TCGA-EK-A3GJ-01 17 40993788 40993788 C G PSME3 3'UTR 0.49 TCGA-EK-A3GJ-01 17 40995065 40995065 C G PSME3 3'UTR 0.31 TCGA-EK-A3GJ-01 17 40995126 40995126 C G PSME3 3'UTR 0.36 TCGA-EK-A3GJ-01 17 40995251 40995251 C G PSME3 3'UTR 0.34 TCGA-EK-A3GJ-01 17 41720864 41720864 C A MEOX1 Nonsense_Mutation p.E212* 0.47 TCGA-EK-A3GJ-01 17 42289777 42289777 G A UBTF Nonsense_Mutation p.Q236* 0.29 TCGA-EK-A3GJ-01 17 45994224 45994224 G A SP2 Missense_Mutation p.E263K 0.50 deleterious(0.05) possibly_damaging(0.555) TCGA-EK-A3GJ-01 17 4700801 4700801 C G PSMB6 Nonsense_Mutation p.S80* 0.71 TCGA-EK-A3GJ-01 17 58740432 58740432 C G PPM1D Nonsense_Mutation p.S446* 0.48 TCGA-EK-A3GJ-01 17 62968902 62968902 C G AMZ2P1 RNA 0.38 TCGA-EK-A3GJ-01 17 71243444 71243444 G A C17orf80 Silent p.T598T 0.39 TCGA-EK-A3GJ-01 17 72443135 72443135 C G GPRC5C Missense_Mutation p.Q477E 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.881) TCGA-EK-A3GJ-01 17 7324764 7324764 C G SPEM1 Nonsense_Mutation p.S257* 0.15 TCGA-EK-A3GJ-01 17 74523490 74523490 C G CYGB 3'UTR 0.32 TCGA-EK-A3GJ-01 17 76490199 76490199 C G DNAH17 Silent p.L2095L 0.61 TCGA-EK-A3GJ-01 17 8197763 8197763 G A SLC25A35 Silent p.S121S 0.73 TCGA-EK-A3GJ-01 18 28913977 28913977 C T DSG1 Intron 0.37 TCGA-EK-A3GJ-01 18 28956917 28956917 C G DSG4 Missense_Mutation p.L15V 0.46 tolerated(0.07) benign(0.006) TCGA-EK-A3GJ-01 18 32888517 32888517 G - ZNF271 RNA 0.32 TCGA-EK-A3GJ-01 18 61057705 61057705 C T VPS4B 3'UTR 0.29 TCGA-EK-A3GJ-01 18 67718769 67718769 G C RTTN Nonsense_Mutation p.S1734* 0.40 TCGA-EK-A3GJ-01 19 10220911 10220911 C T PPAN Missense_Mutation p.R271W 0.18 deleterious(0) probably_damaging(1) TCGA-EK-A3GJ-01 19 10692201 10692201 C T AP1M2 Missense_Mutation p.E170K 0.51 deleterious(0) probably_damaging(0.978) TCGA-EK-A3GJ-01 19 10886383 10886383 G A DNM2 Silent p.L130L 0.50 TCGA-EK-A3GJ-01 19 12246343 12246343 C T ZNF20 Missense_Mutation p.E58K 0.52 tolerated(0.08) benign(0.001) TCGA-EK-A3GJ-01 19 13264244 13264244 G C IER2 Missense_Mutation p.E82Q 0.36 tolerated(0.34) benign(0.023) TCGA-EK-A3GJ-01 19 1366351 1366351 C G MUM1 Missense_Mutation p.I445M 0.46 deleterious(0) probably_damaging(0.914) TCGA-EK-A3GJ-01 19 18257690 18257690 G C MAST3 Splice_Site p.X1026_splice 0.47 TCGA-EK-A3GJ-01 19 41381746 41381746 C T CYP2A7 Missense_Mutation p.R446K 0.40 tolerated(0.05) benign(0.183) TCGA-EK-A3GJ-01 19 4323769 4323769 G C FSD1 3'UTR 0.48 TCGA-EK-A3GJ-01 19 43358124 43358124 C T PSG10P RNA 0.44 TCGA-EK-A3GJ-01 19 46417529 46417529 C T NANOS2 3'UTR 0.20 TCGA-EK-A3GJ-01 19 48790145 48790145 G C ZNF114 3'UTR 0.37 TCGA-EK-A3GJ-01 19 52033111 52033111 C G SIGLEC6 Silent p.L293L 0.26 TCGA-EK-A3GJ-01 19 52443955 52443955 C T ZNF613 Silent p.I76I 0.27 TCGA-EK-A3GJ-01 19 52617996 52617996 C T ZNF616 3'UTR 0.21 TCGA-EK-A3GJ-01 19 53571571 53571571 C T ZNF160 Missense_Mutation p.G739D 0.32 tolerated(0.1) probably_damaging(0.997) TCGA-EK-A3GJ-01 19 58966858 58966858 C T ZNF324B Missense_Mutation p.R183W 0.14 deleterious(0.02) benign(0.167) TCGA-EK-A3GJ-01 19 8595361 8595361 C T MYO1F Missense_Mutation p.E714K 0.18 tolerated(0.33) benign(0.003) TCGA-EK-A3GJ-01 1 113657443 113657443 C T LRIG2 Silent p.V825V 0.42 TCGA-EK-A3GJ-01 1 114254566 114254566 G C PHTF1 Missense_Mutation p.S318C 0.34 deleterious(0.01) benign(0.002) TCGA-EK-A3GJ-01 1 11579839 11579839 C T PTCHD2 Missense_Mutation p.S701F 0.82 tolerated(0.09) benign(0.073) TCGA-EK-A3GJ-01 1 145299857 145299857 G A NBPF10 Silent p.K302K 0.12 TCGA-EK-A3GJ-01 1 149783771 149783771 C G HIST2H2BF Missense_Mutation p.E36D 0.43 deleterious_low_confidence(0.02) benign(0.039) TCGA-EK-A3GJ-01 1 149783795 149783795 C G HIST2H2BF Missense_Mutation p.K28N 0.49 deleterious_low_confidence(0) unknown(0) TCGA-EK-A3GJ-01 1 153330788 153330788 G C S100A9 Missense_Mutation p.R10P 0.46 tolerated(0.19) possibly_damaging(0.677) TCGA-EK-A3GJ-01 1 154296432 154296432 C T AQP10 Intron 0.38 TCGA-EK-A3GJ-01 1 156228856 156228856 G C SMG5 Silent p.V794V 0.45 TCGA-EK-A3GJ-01 1 156376777 156376777 C A C1orf61 Intron 0.48 TCGA-EK-A3GJ-01 1 158686965 158686965 C T OR6K3 Missense_Mutation p.G314E 0.35 deleterious(0.03) benign(0.111) TCGA-EK-A3GJ-01 1 160156477 160156477 G A ATP1A4 Silent p.E1026E 0.47 TCGA-EK-A3GJ-01 1 160395021 160395021 G A VANGL2 Silent p.K473K 0.46 TCGA-EK-A3GJ-01 1 161140467 161140467 C T PPOX Nonsense_Mutation p.Q386* 0.17 TCGA-EK-A3GJ-01 1 162467847 162467847 C T UHMK1 Silent p.F19F 0.78 TCGA-EK-A3GJ-01 1 16384941 16384941 G C FAM131C Missense_Mutation p.F278L 0.19 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GJ-01 1 172501845 172501845 C G SUCO 5'Flank 0.09 TCGA-EK-A3GJ-01 1 182369456 182369456 C T TEDDM1 Missense_Mutation p.M55I 0.48 tolerated(0.73) benign(0.015) TCGA-EK-A3GJ-01 1 184590376 184590376 G A C1orf21 3'UTR 0.38 TCGA-EK-A3GJ-01 1 201970518 201970518 G A RNPEP Missense_Mutation p.D407N 0.41 tolerated(0.1) probably_damaging(0.999) TCGA-EK-A3GJ-01 1 206566258 206566258 G C SRGAP2 Missense_Mutation p.E147D 0.10 deleterious(0.03) benign(0.315) TCGA-EK-A3GJ-01 1 207812870 207812870 G C CR1 3'Flank 0.44 TCGA-EK-A3GJ-01 1 225268222 225268222 C T DNAH14 Nonsense_Mutation p.Q48* 0.28 TCGA-EK-A3GJ-01 1 225699552 225699552 C T ENAH Missense_Mutation p.E478K 0.36 deleterious(0.01) probably_damaging(0.913) TCGA-EK-A3GJ-01 1 225977058 225977058 G A SRP9 Silent p.E86E 0.33 TCGA-EK-A3GJ-01 1 226333986 226333986 C T ACBD3 3'UTR 0.38 TCGA-EK-A3GJ-01 1 228495976 228495976 G C OBSCN Missense_Mutation p.D5168H 0.38 probably_damaging(0.968) TCGA-EK-A3GJ-01 1 22850819 22850819 C T ZBTB40 Missense_Mutation p.P1136L 0.86 tolerated(0.1) benign(0.003) TCGA-EK-A3GJ-01 1 245851198 245851198 C A KIF26B Missense_Mutation p.P1638Q 0.45 tolerated(0.13) unknown(0) TCGA-EK-A3GJ-01 1 247690334 247690334 C T OR2C3 3'Flank 0.36 TCGA-EK-A3GJ-01 1 25812143 25812143 G C TMEM57 Missense_Mutation p.Q451H 0.37 deleterious(0) probably_damaging(0.917) TCGA-EK-A3GJ-01 1 26620814 26620814 G A UBXN11 Silent p.L147L 0.38 TCGA-EK-A3GJ-01 1 27278001 27278001 G A C1orf172 Nonsense_Mutation p.Q291* 0.26 TCGA-EK-A3GJ-01 1 27278443 27278443 G C C1orf172 Silent p.P143P 0.39 TCGA-EK-A3GJ-01 1 36883706 36883706 C T OSCP1 3'UTR 0.44 TCGA-EK-A3GJ-01 1 40759641 40759641 C G ZMPSTE24 3'UTR 0.86 TCGA-EK-A3GJ-01 1 45347294 45347294 C T EIF2B3 Silent p.L258L 0.52 TCGA-EK-A3GJ-01 1 53387259 53387259 C T ECHDC2 Silent p.E29E 0.36 TCGA-EK-A3GJ-01 1 6270935 6270935 G C RNF207 Silent p.L316L 0.43 TCGA-EK-A3GJ-01 1 67340544 67340544 G C WDR78 Silent p.L240L 0.35 TCGA-EK-A3GJ-01 1 75175917 75175917 T A CRYZ Silent p.A165A 0.29 TCGA-EK-A3GJ-01 1 78560749 78560749 G A GIPC2 Silent p.K180K 0.48 TCGA-EK-A3GJ-01 20 18296266 18296266 C T ZNF133 Silent p.L256L 0.50 TCGA-EK-A3GJ-01 20 2127206 2127206 G A STK35 3'UTR 0.31 TCGA-EK-A3GJ-01 20 2465219 2465219 G A ZNF343 Nonsense_Mutation p.Q130* 0.28 TCGA-EK-A3GJ-01 20 25038481 25038481 G A ACSS1 Silent p.P86P 0.50 TCGA-EK-A3GJ-01 20 34435287 34435287 G C PHF20 Missense_Mutation p.E91Q 0.38 deleterious(0.04) benign(0.009) TCGA-EK-A3GJ-01 20 49507267 49507267 C T ADNP 3'UTR 0.26 TCGA-EK-A3GJ-01 20 53208320 53208320 C T DOK5 Missense_Mutation p.T192M 0.44 deleterious(0) possibly_damaging(0.731) TCGA-EK-A3GJ-01 20 62272750 62272750 C G STMN3 Missense_Mutation p.E162Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A3GJ-01 20 62275132 62275132 C G STMN3 Missense_Mutation p.E90Q 0.53 deleterious(0.03) possibly_damaging(0.644) TCGA-EK-A3GJ-01 21 33692951 33692951 C G URB1 Splice_Site p.X1829_splice 0.56 TCGA-EK-A3GJ-01 21 43412671 43412671 C G ZBTB21 Missense_Mutation p.E512Q 0.38 tolerated(0.07) benign(0.009) TCGA-EK-A3GJ-01 21 44839823 44839823 G C SIK1 Silent p.L345L 0.12 TCGA-EK-A3GJ-01 22 16287382 16287382 C T POTEH Silent p.P168P 0.16 TCGA-EK-A3GJ-01 22 18304843 18304843 G A MICAL3 Missense_Mutation p.S1134L 0.34 benign(0.121) TCGA-EK-A3GJ-01 22 22868860 22868860 G A ZNF280A Silent p.V365V 0.44 TCGA-EK-A3GJ-01 22 24621025 24621025 G A GGT5 Missense_Mutation p.A519V 0.26 deleterious(0.02) possibly_damaging(0.482) TCGA-EK-A3GJ-01 22 37482336 37482336 C T TMPRSS6 Silent p.P329P 0.08 TCGA-EK-A3GJ-01 22 38130481 38130481 G T TRIOBP Nonsense_Mutation p.E1380* 0.80 TCGA-EK-A3GJ-01 22 38130493 38130493 G A TRIOBP Missense_Mutation p.E1384K 0.80 deleterious_low_confidence(0.01) benign(0.005) TCGA-EK-A3GJ-01 22 42383277 42383277 C G SEPT3 Missense_Mutation p.I133M 0.55 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GJ-01 22 42610495 42610495 C T TCF20 Missense_Mutation p.E273K 0.82 probably_damaging(0.913) TCGA-EK-A3GJ-01 22 43821097 43821097 C T MPPED1 Missense_Mutation p.R36W 0.31 deleterious(0) possibly_damaging(0.895) TCGA-EK-A3GJ-01 2 114210748 114210748 G C CBWD2 Missense_Mutation p.E155Q 0.33 tolerated(0.05) possibly_damaging(0.615) TCGA-EK-A3GJ-01 2 122139867 122139867 C T CLASP1 Silent p.A1136A 0.23 TCGA-EK-A3GJ-01 2 130909599 130909599 G A SMPD4 3'UTR 0.41 TCGA-EK-A3GJ-01 2 131520842 131520842 G C AMER3 Missense_Mutation p.K399N 0.07 tolerated(0.18) possibly_damaging(0.776) TCGA-EK-A3GJ-01 2 131798817 131798817 G A ARHGEF4 Silent p.Q373Q 0.40 TCGA-EK-A3GJ-01 2 179433825 179433825 C G TTN Missense_Mutation p.E25678D 0.37 TCGA-EK-A3GJ-01 2 203168259 203168259 C T NOP58 3'UTR 0.49 TCGA-EK-A3GJ-01 2 204000415 204000415 C T NBEAL1 Nonsense_Mutation p.Q1248* 0.57 TCGA-EK-A3GJ-01 2 219292983 219292983 G T VIL1 Missense_Mutation p.D164Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GJ-01 2 222290565 222290565 C G EPHA4 3'UTR 0.40 TCGA-EK-A3GJ-01 2 239098569 239098586 TCCCTTCAGTCTTTACCA - ILKAP In_Frame_Del p.M69_G74del 0.13 TCGA-EK-A3GJ-01 2 39240630 39240630 C T SOS1 Missense_Mutation p.R713Q 0.29 tolerated(0.23) benign(0.077) TCGA-EK-A3GJ-01 2 46987750 46987750 G C SOCS5 3'UTR 0.36 TCGA-EK-A3GJ-01 2 6988805 6988805 G C CMPK2 3'UTR 0.19 TCGA-EK-A3GJ-01 2 70088422 70088422 C T GMCL1 Missense_Mutation p.S362F 0.24 deleterious(0) benign(0.195) TCGA-EK-A3GJ-01 2 71046974 71046974 G A CLEC4F Silent p.L37L 0.49 TCGA-EK-A3GJ-01 2 89157036 89157036 C G IGKC Missense_Mutation p.E54D 0.28 tolerated(0.36) benign(0.001) TCGA-EK-A3GJ-01 2 98340609 98340609 G T ZAP70 Missense_Mutation p.R37L 0.40 deleterious(0) probably_damaging(1) TCGA-EK-A3GJ-01 3 100976541 100976541 G A IMPG2 Missense_Mutation p.H329Y 0.26 deleterious(0.04) probably_damaging(0.989) TCGA-EK-A3GJ-01 3 101056409 101056409 G C SENP7 Missense_Mutation p.F808L 0.31 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GJ-01 3 108074109 108074109 C G HHLA2 Missense_Mutation p.S189C 0.50 deleterious(0.04) probably_damaging(0.932) TCGA-EK-A3GJ-01 3 121409846 121409846 G C GOLGB1 Missense_Mutation p.L2789V 0.36 benign(0.034) TCGA-EK-A3GJ-01 3 121409951 121409951 G C GOLGB1 Missense_Mutation p.H2754D 0.38 benign(0.149) TCGA-EK-A3GJ-01 3 124567329 124567329 G C ITGB5 Silent p.L146L 0.39 TCGA-EK-A3GJ-01 3 124731854 124731854 G A HEG1 Missense_Mutation p.P857S 0.42 tolerated(0.1) benign(0.018) TCGA-EK-A3GJ-01 3 125745256 125745256 C G SLC41A3 Missense_Mutation p.E174Q 0.30 tolerated(0.24) benign(0.129) TCGA-EK-A3GJ-01 3 128852970 128852970 C T ISY1 Missense_Mutation p.E226K 0.36 tolerated(0.6) benign(0.117) TCGA-EK-A3GJ-01 3 128853782 128853782 C G ISY1 Missense_Mutation p.R167T 0.45 deleterious(0) possibly_damaging(0.886) TCGA-EK-A3GJ-01 3 131756537 131756537 G C CPNE4 5'UTR 0.38 TCGA-EK-A3GJ-01 3 142423314 142423314 G C PLS1 Missense_Mutation p.L505F 0.40 deleterious(0.03) possibly_damaging(0.741) TCGA-EK-A3GJ-01 3 142462353 142462353 C T TRPC1 Silent p.I118I 0.47 TCGA-EK-A3GJ-01 3 147113918 147113918 C T ZIC4 Missense_Mutation p.G187S 0.46 tolerated(0.28) benign(0.002) TCGA-EK-A3GJ-01 3 156570671 156570671 C T LEKR1 Nonsense_Mutation p.Q55* 0.50 TCGA-EK-A3GJ-01 3 173322819 173322819 C T NLGN1 Missense_Mutation p.S144L 0.33 tolerated(0.06) benign(0.008) TCGA-EK-A3GJ-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.58 deleterious(0.02) probably_damaging(0.959) TCGA-EK-A3GJ-01 3 195507868 195507868 G A MUC4 Missense_Mutation p.S3528L 0.10 benign(0.371) TCGA-EK-A3GJ-01 3 195511846 195511846 G A MUC4 Missense_Mutation p.S2202F 0.10 unknown(0) TCGA-EK-A3GJ-01 3 195512140 195512140 G C MUC4 Nonsense_Mutation p.S2104* 0.12 TCGA-EK-A3GJ-01 3 195512284 195512284 G C MUC4 Nonsense_Mutation p.S2056* 0.09 TCGA-EK-A3GJ-01 3 195512318 195512318 G A MUC4 Nonsense_Mutation p.Q2045* 0.10 TCGA-EK-A3GJ-01 3 195512332 195512332 G A MUC4 Missense_Mutation p.S2040L 0.10 unknown(0) TCGA-EK-A3GJ-01 3 195512351 195512351 G A MUC4 Missense_Mutation p.P2034S 0.11 unknown(0) TCGA-EK-A3GJ-01 3 195512716 195512716 G A MUC4 Missense_Mutation p.S1912L 0.12 unknown(0) TCGA-EK-A3GJ-01 3 195513410 195513410 G C MUC4 Missense_Mutation p.L1681V 0.10 possibly_damaging(0.753) TCGA-EK-A3GJ-01 3 195513580 195513580 G A MUC4 Missense_Mutation p.S1624L 0.23 possibly_damaging(0.702) TCGA-EK-A3GJ-01 3 197639564 197639564 G A IQCG Silent p.F315F 0.50 TCGA-EK-A3GJ-01 3 21465528 21465528 C T ZNF385D Missense_Mutation p.R294K 0.50 deleterious(0.01) possibly_damaging(0.745) TCGA-EK-A3GJ-01 3 37034248 37034248 G T EPM2AIP1 Silent p.L107L 0.38 TCGA-EK-A3GJ-01 3 40231490 40231491 TT - MYRIP Frame_Shift_Del p.F401* 0.29 TCGA-EK-A3GJ-01 3 43074493 43074493 G A FAM198A Silent p.T246T 0.36 TCGA-EK-A3GJ-01 3 49212502 49212502 G A KLHDC8B Nonsense_Mutation p.W258* 0.39 TCGA-EK-A3GJ-01 3 52404646 52404646 G A DNAH1 Missense_Mutation p.E2138K 0.46 benign(0.002) TCGA-EK-A3GJ-01 3 52563276 52563276 C T NT5DC2 Missense_Mutation p.D103N 0.40 tolerated(0.08) possibly_damaging(0.688) TCGA-EK-A3GJ-01 3 89391038 89391038 G A EPHA3 Nonsense_Mutation p.W368* 0.32 TCGA-EK-A3GJ-01 3 98002360 98002360 C G OR5H2 Nonsense_Mutation p.S210* 0.50 TCGA-EK-A3GJ-01 4 113538800 113538800 C G C4orf21 Missense_Mutation p.E800Q 0.47 tolerated(0.13) benign(0.147) TCGA-EK-A3GJ-01 4 140309101 140309101 G A NAA15 Missense_Mutation p.E822K 0.34 tolerated(0.13) benign(0.05) TCGA-EK-A3GJ-01 4 140811335 140811335 G C MAML3 Missense_Mutation p.Q419E 0.27 benign(0.137) TCGA-EK-A3GJ-01 4 152022192 152022192 G A RPS3A Missense_Mutation p.E78K 0.60 tolerated(0.11) benign(0.107) TCGA-EK-A3GJ-01 4 170038882 170038882 C G SH3RF1 Missense_Mutation p.Q523H 0.50 tolerated(0.15) benign(0.025) TCGA-EK-A3GJ-01 4 186357251 186357251 C T C4orf47 Silent p.F124F 0.44 TCGA-EK-A3GJ-01 4 2934873 2934873 G A MFSD10 Missense_Mutation p.S111F 0.35 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GJ-01 4 3213737 3213737 G A HTT Missense_Mutation p.E2166K 0.35 benign(0.008) TCGA-EK-A3GJ-01 4 657657 657657 C T PDE6B Silent p.F673F 0.41 TCGA-EK-A3GJ-01 4 87250 87250 C G Z95704.2 RNA 0.42 TCGA-EK-A3GJ-01 4 88959628 88959628 C T PKD2 Missense_Mutation p.P357S 0.32 tolerated(0.35) benign(0.248) TCGA-EK-A3GJ-01 4 88986631 88986631 C T PKD2 Nonsense_Mutation p.R742* 0.35 TCGA-EK-A3GJ-01 4 94750328 94750328 C T ATOH1 Missense_Mutation p.S84F 0.47 deleterious(0) probably_damaging(0.986) TCGA-EK-A3GJ-01 5 133915865 133915865 C G JADE2 3'UTR 0.54 TCGA-EK-A3GJ-01 5 133916271 133916271 C G JADE2 3'UTR 0.32 TCGA-EK-A3GJ-01 5 145969475 145969475 C T PPP2R2B 3'UTR 0.33 TCGA-EK-A3GJ-01 5 14709947 14709947 G C ANKH 3'UTR 0.47 TCGA-EK-A3GJ-01 5 149784289 149784289 C G CD74 Missense_Mutation p.M193I 0.46 deleterious(0) possibly_damaging(0.731) TCGA-EK-A3GJ-01 5 149784729 149784729 C G CD74 Silent p.L152L 0.48 TCGA-EK-A3GJ-01 5 168123399 168123399 C T SLIT3 Missense_Mutation p.E994K 0.41 deleterious(0.01) possibly_damaging(0.505) TCGA-EK-A3GJ-01 5 179155716 179155716 C G CANX 3'UTR 0.38 TCGA-EK-A3GJ-01 5 180047610 180047610 C T FLT4 Missense_Mutation p.R802K 0.57 deleterious(0.02) possibly_damaging(0.562) TCGA-EK-A3GJ-01 5 23509646 23509646 G A PRDM9 Nonsense_Mutation p.W46* 0.25 TCGA-EK-A3GJ-01 5 65338985 65338985 G C ERBB2IP Missense_Mutation p.E463Q 0.39 deleterious(0.01) possibly_damaging(0.713) TCGA-EK-A3GJ-01 5 68530841 68530841 G A CDK7 Silent p.E13E 0.50 TCGA-EK-A3GJ-01 5 74323605 74323605 G C GCNT4 3'UTR 0.59 TCGA-EK-A3GJ-01 5 89754853 89754853 A T MBLAC2 3'UTR 0.37 TCGA-EK-A3GJ-01 5 96066545 96066545 C T CAST Missense_Mutation p.S163F 0.57 deleterious(0) probably_damaging(0.978) TCGA-EK-A3GJ-01 6 127794391 127794391 G A SOGA3 3'UTR 0.20 TCGA-EK-A3GJ-01 6 132859608 132859608 C T TAAR9 Silent p.F60F 0.25 TCGA-EK-A3GJ-01 6 134305526 134305526 G C TBPL1 Missense_Mutation p.D99H 0.42 deleterious(0.01) benign(0.012) TCGA-EK-A3GJ-01 6 13604705 13604705 C T SIRT5 Intron 0.86 TCGA-EK-A3GJ-01 6 149699569 149699569 G C TAB2 Missense_Mutation p.R173T 0.59 deleterious(0.03) probably_damaging(0.994) TCGA-EK-A3GJ-01 6 152671384 152671384 C T SYNE1 Silent p.Q3940Q 0.33 TCGA-EK-A3GJ-01 6 158834175 158834175 C T TULP4 Nonsense_Mutation p.Q111* 0.32 TCGA-EK-A3GJ-01 6 170627053 170627053 C A FAM120B Nonsense_Mutation p.S192* 0.25 TCGA-EK-A3GJ-01 6 18160172 18160172 C G KDM1B Missense_Mutation p.H16D 0.49 tolerated_low_confidence(0.54) possibly_damaging(0.504) TCGA-EK-A3GJ-01 6 26033387 26033387 C T HIST1H2AB 3'UTR 0.39 TCGA-EK-A3GJ-01 6 26033405 26033405 C T HIST1H2AB Silent p.%3D 0.34 TCGA-EK-A3GJ-01 6 27835303 27835303 G A HIST1H1B Missense_Mutation p.S2L 0.28 deleterious(0) benign(0.194) TCGA-EK-A3GJ-01 6 28403285 28403285 C T ZSCAN23 Missense_Mutation p.E170K 0.18 tolerated(0.72) benign(0.003) TCGA-EK-A3GJ-01 6 32170026 32170026 C T NOTCH4 Silent p.P1194P 0.19 TCGA-EK-A3GJ-01 6 32183067 32183067 C T NOTCH4 Missense_Mutation p.D653N 0.28 tolerated(0.26) benign(0.011) TCGA-EK-A3GJ-01 6 33169070 33169070 G A SLC39A7 Silent p.L16L 0.83 TCGA-EK-A3GJ-01 6 33403358 33403358 G C SYNGAP1 Missense_Mutation p.E244Q 0.61 deleterious(0) benign(0.406) TCGA-EK-A3GJ-01 6 33632874 33632874 C T ITPR3 Silent p.I431I 0.16 TCGA-EK-A3GJ-01 6 34802138 34802138 G C UHRF1BP1 Missense_Mutation p.Q161H 0.91 tolerated(0.52) benign(0.091) TCGA-EK-A3GJ-01 6 42665903 42665903 C T PRPH2 3'UTR 0.90 TCGA-EK-A3GJ-01 6 43026954 43026954 C G MRPL2 Intron 0.50 TCGA-EK-A3GJ-01 6 47681717 47681717 C T GPR115 Missense_Mutation p.H246Y 0.23 tolerated(1) benign(0.332) TCGA-EK-A3GJ-01 6 5004242 5004242 C G RPP40 5'UTR 0.71 TCGA-EK-A3GJ-01 6 90453374 90453374 G C MDN1 Missense_Mutation p.S1413C 0.33 possibly_damaging(0.507) TCGA-EK-A3GJ-01 6 96651676 96651676 C G FUT9 Missense_Mutation p.I215M 0.57 deleterious(0) probably_damaging(0.989) TCGA-EK-A3GJ-01 7 100682598 100682598 C T MUC17 Missense_Mutation p.S2634L 0.18 benign(0.018) TCGA-EK-A3GJ-01 7 116963098 116963098 G A WNT2 5'UTR 0.53 TCGA-EK-A3GJ-01 7 131195681 131195681 C T PODXL Silent p.S204S 0.79 TCGA-EK-A3GJ-01 7 151878287 151878287 G A KMT2C Nonsense_Mutation p.Q2220* 0.31 TCGA-EK-A3GJ-01 7 27133095 27133095 C G HOXA1 3'UTR 0.48 TCGA-EK-A3GJ-01 7 32526860 32526860 C T LSM5 3'UTR 0.32 TCGA-EK-A3GJ-01 7 36917698 36917698 G A ELMO1 Missense_Mutation p.S580L 0.32 deleterious(0) possibly_damaging(0.67) TCGA-EK-A3GJ-01 7 42088256 42088256 C T GLI3 Silent p.L171L 0.32 TCGA-EK-A3GJ-01 7 6639837 6639837 G A C7orf26 Missense_Mutation p.D320N 0.35 tolerated(0.12) possibly_damaging(0.741) TCGA-EK-A3GJ-01 7 72657941 72657941 C G GTF2IRD2P1 RNA 0.30 TCGA-EK-A3GJ-01 7 72754676 72754676 G A FKBP6 Missense_Mutation p.E209K 0.36 tolerated(0.26) benign(0.002) TCGA-EK-A3GJ-01 7 74211579 74211579 C T GTF2IRD2 Missense_Mutation p.D758N 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A3GJ-01 7 7622951 7622951 G C MIOS Missense_Mutation p.L532F 0.17 deleterious(0.01) benign(0.377) TCGA-EK-A3GJ-01 7 77814979 77814979 G T MAGI2 Missense_Mutation p.P760T 0.35 deleterious(0.03) benign(0.026) TCGA-EK-A3GJ-01 7 99017543 99017543 C G ATP5J2-PTCD1 3'UTR 0.09 TCGA-EK-A3GJ-01 8 104452417 104452417 C G DCAF13 Missense_Mutation p.S487C 0.50 tolerated(0.19) benign(0.018) TCGA-EK-A3GJ-01 8 105010465 105010465 C T RIMS2 Intron 0.34 TCGA-EK-A3GJ-01 8 116616498 116616498 G A TRPS1 Silent p.L566L 0.27 TCGA-EK-A3GJ-01 8 125131950 125131950 C G FER1L6 Silent p.L1831L 0.52 TCGA-EK-A3GJ-01 8 125131974 125131974 C T FER1L6 Silent p.V1839V 0.49 TCGA-EK-A3GJ-01 8 134050416 134050416 G C SLA 3'UTR 0.25 TCGA-EK-A3GJ-01 8 1617924 1617924 G C DLGAP2 Missense_Mutation p.E646Q 0.42 deleterious(0.05) benign(0.007) TCGA-EK-A3GJ-01 8 67547485 67547485 C G VCPIP1 Missense_Mutation p.D974H 0.52 deleterious(0) possibly_damaging(0.607) TCGA-EK-A3GJ-01 8 67817467 67817467 C T MCMDC2 Silent p.F592F 0.21 TCGA-EK-A3GJ-01 8 86158063 86158063 G A CA13 Silent p.S2S 0.55 TCGA-EK-A3GJ-01 8 91635926 91635926 G A TMEM64 3'UTR 0.34 TCGA-EK-A3GJ-01 8 92007625 92007625 G C TMEM55A 3'UTR 0.28 TCGA-EK-A3GJ-01 8 95522724 95522724 G T KIAA1429 Missense_Mutation p.Q1183K 0.34 deleterious(0) probably_damaging(0.984) TCGA-EK-A3GJ-01 9 100080841 100080841 G A CCDC180 Silent p.R396R 0.11 TCGA-EK-A3GJ-01 9 100086218 100086218 G C CCDC180 Intron 0.46 TCGA-EK-A3GJ-01 9 107549160 107549160 G A ABCA1 Missense_Mutation p.S2101F 0.52 deleterious(0) probably_damaging(0.98) TCGA-EK-A3GJ-01 9 116823271 116823271 G A AMBP Nonsense_Mutation p.Q321* 0.27 TCGA-EK-A3GJ-01 9 131302117 131302117 C G GLE1 Intron 0.61 TCGA-EK-A3GJ-01 9 139835782 139835782 G C FBXW5 Missense_Mutation p.L460V 0.42 deleterious(0.01) probably_damaging(0.952) TCGA-EK-A3GJ-01 9 139836132 139836132 G C FBXW5 Missense_Mutation p.I367M 0.37 deleterious(0.01) possibly_damaging(0.898) TCGA-EK-A3GJ-01 9 140084301 140084301 G A SSNA1 Missense_Mutation p.E99K 0.38 deleterious(0) probably_damaging(0.928) TCGA-EK-A3GJ-01 9 19346894 19346894 C T DENND4C Missense_Mutation p.S1327L 0.24 deleterious(0.05) benign(0.182) TCGA-EK-A3GJ-01 9 33221052 33221052 G A SPINK4 Missense_Mutation p.D26N 0.41 tolerated_low_confidence(0.43) unknown(0) TCGA-EK-A3GJ-01 9 40774575 40774575 G A ZNF658 Nonsense_Mutation p.Q234* 0.39 TCGA-EK-A3GJ-01 9 5787458 5787458 G C ERMP1 Missense_Mutation p.S841C 0.32 tolerated(0.05) possibly_damaging(0.775) TCGA-EK-A3GJ-01 9 96870296 96870296 G A PTPDC1 3'UTR 0.23 TCGA-EK-A3GJ-01 X 129148467 129148467 G C BCORL1 Silent p.G573G 0.24 TCGA-EK-A3GJ-01 X 132161543 132161543 C A USP26 Nonsense_Mutation p.E236* 0.43 TCGA-EK-A3GJ-01 X 135080293 135080293 C T SLC9A6 Silent p.F184F 0.23 TCGA-EK-A3GJ-01 X 135763011 135763011 A G ARHGEF6 Missense_Mutation p.V528A 0.11 tolerated(0.15) benign(0.355) TCGA-EK-A3GJ-01 X 144906518 144906518 G T SLITRK2 3'UTR 0.37 TCGA-EK-A3GJ-01 X 144907151 144907151 C G SLITRK2 3'UTR 0.33 TCGA-EK-A3GJ-01 X 152031157 152031157 C T NSDHL Silent p.S144S 0.37 TCGA-EK-A3GJ-01 X 15706849 15706849 C T CA5BP1 RNA 0.42 TCGA-EK-A3GJ-01 X 19418717 19418717 C G MAP3K15 Missense_Mutation p.E637Q 0.39 tolerated(0.11) possibly_damaging(0.557) TCGA-EK-A3GJ-01 X 35820490 35820490 G C MAGEB16 Missense_Mutation p.E59D 0.53 tolerated(0.26) benign(0.114) TCGA-EK-A3GJ-01 X 37431657 37431657 G C LANCL3 Silent p.L178L 0.38 TCGA-EK-A3GJ-01 X 37850284 37850284 C T CXorf27 Silent p.I64I 0.40 TCGA-EK-A3GJ-01 X 40562728 40562728 G C MED14 Missense_Mutation p.S460C 0.40 deleterious(0) probably_damaging(0.922) TCGA-EK-A3GJ-01 X 49862118 49862118 C T CLCN5 3'UTR 0.62 TCGA-EK-A3GJ-01 X 51488203 51488203 G C GSPT2 Missense_Mutation p.R494T 0.41 deleterious(0) probably_damaging(0.922) TCGA-EK-A3GJ-01 X 53559811 53559811 G A HUWE1 3'UTR 0.47 TCGA-EK-A3GJ-01 X 53589158 53589158 C A HUWE1 Nonsense_Mutation p.E2418* 0.45 TCGA-EK-A3GJ-01 X 57405214 57405214 C G FAAH2 Missense_Mutation p.I291M 0.41 tolerated(0.14) benign(0.326) TCGA-EK-A3GJ-01 X 77528275 77528275 C T CYSLTR1 Silent p.K323K 0.44 TCGA-EK-A3GK-01 10 101716973 101716973 G T DNMBP Intron 0.33 TCGA-EK-A3GK-01 10 102746715 102746715 C A MRPL43 Nonsense_Mutation p.E86* 0.43 TCGA-EK-A3GK-01 10 102749583 102749583 G A C10orf2 Missense_Mutation p.D476N 0.35 tolerated(0.09) benign(0.018) TCGA-EK-A3GK-01 10 103368688 103368688 C T DPCD Silent p.I167I 0.29 TCGA-EK-A3GK-01 10 103867963 103867963 C T LDB1 Missense_Mutation p.E375K 0.43 tolerated(0.23) possibly_damaging(0.651) TCGA-EK-A3GK-01 10 103868034 103868034 C T LDB1 Missense_Mutation p.G351E 0.41 deleterious(0.02) benign(0.039) TCGA-EK-A3GK-01 10 103868035 103868035 C T LDB1 Missense_Mutation p.G351R 0.40 deleterious(0) possibly_damaging(0.749) TCGA-EK-A3GK-01 10 104176302 104176302 G A PSD Missense_Mutation p.S165L 0.29 deleterious_low_confidence(0.01) benign(0.035) TCGA-EK-A3GK-01 10 105233456 105233456 G A CALHM3 Silent p.I183I 0.35 TCGA-EK-A3GK-01 10 105990417 105990417 C G WDR96 Missense_Mutation p.D84H 0.46 deleterious(0) probably_damaging(0.993) TCGA-EK-A3GK-01 10 11373436 11373436 G C CELF2 3'UTR 0.22 TCGA-EK-A3GK-01 10 113915685 113915685 C T GPAM Missense_Mutation p.E750K 0.43 tolerated(0.1) possibly_damaging(0.772) TCGA-EK-A3GK-01 10 1139409 1139409 C T WDR37 Missense_Mutation p.H208Y 0.41 deleterious(0) benign(0.391) TCGA-EK-A3GK-01 10 115661612 115661612 G C NHLRC2 Missense_Mutation p.D443H 0.33 deleterious(0) probably_damaging(0.984) TCGA-EK-A3GK-01 10 119036742 119036742 C G SLC18A2 Missense_Mutation p.P504A 0.23 deleterious(0.01) possibly_damaging(0.521) TCGA-EK-A3GK-01 10 120095732 120095732 C T FAM204A Missense_Mutation p.E66K 0.42 tolerated(0.08) benign(0.019) TCGA-EK-A3GK-01 10 121259573 121259573 G C RGS10 3'UTR 0.46 TCGA-EK-A3GK-01 10 12133641 12133641 C G DHTKD1 Missense_Mutation p.P373A 0.38 deleterious(0) possibly_damaging(0.864) TCGA-EK-A3GK-01 10 12159690 12159690 C A DHTKD1 Missense_Mutation p.Q780K 0.32 tolerated(0.71) benign(0.004) TCGA-EK-A3GK-01 10 124177418 124177418 G A PLEKHA1 Missense_Mutation p.M205I 0.43 deleterious(0.04) probably_damaging(0.979) TCGA-EK-A3GK-01 10 124177430 124177430 G A PLEKHA1 Silent p.K209K 0.21 TCGA-EK-A3GK-01 10 124672381 124672381 C T FAM24A Missense_Mutation p.P77S 0.51 tolerated(0.19) benign(0.142) TCGA-EK-A3GK-01 10 126683113 126683113 C G CTBP2 Missense_Mutation p.Q775H 0.36 tolerated(0.09) benign(0.206) TCGA-EK-A3GK-01 10 12940471 12940471 G A CCDC3 Missense_Mutation p.A253V 0.60 tolerated_low_confidence(0.11) benign(0.003) TCGA-EK-A3GK-01 10 133955450 133955450 G C JAKMIP3 Silent p.L500L 0.38 TCGA-EK-A3GK-01 10 134743130 134743130 C A TTC40 Intron 0.30 TCGA-EK-A3GK-01 10 13629114 13629114 C A PRPF18 Silent p.R10R 0.39 TCGA-EK-A3GK-01 10 1568961 1568961 G A ADARB2 Intron 0.34 TCGA-EK-A3GK-01 10 21097533 21097533 G A NEBL Silent p.F889F 0.43 TCGA-EK-A3GK-01 10 21098823 21098823 G A NEBL Silent p.L841L 0.30 TCGA-EK-A3GK-01 10 22634677 22634677 G A SPAG6 Silent p.R17R 0.38 TCGA-EK-A3GK-01 10 28358735 28358735 G A MPP7 Silent p.I390I 0.27 TCGA-EK-A3GK-01 10 29813464 29813464 C T SVIL Silent p.T841T 0.08 TCGA-EK-A3GK-01 10 43046052 43046052 G A ZNF37BP RNA 0.29 TCGA-EK-A3GK-01 10 45485136 45485136 G C RASSF4 Missense_Mutation p.E218Q 0.40 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 10 45496289 45496289 C T C10orf25 Missense_Mutation p.E7K 0.44 tolerated_low_confidence(0.17) benign(0.013) TCGA-EK-A3GK-01 10 46282505 46282505 C T FAM21C Missense_Mutation p.A945V 0.33 deleterious(0.04) possibly_damaging(0.543) TCGA-EK-A3GK-01 10 46998893 46998893 C T GPRIN2 Missense_Mutation p.R5C 0.20 deleterious_low_confidence(0.01) benign(0.401) TCGA-EK-A3GK-01 10 47086912 47086912 C A NPY4R Missense_Mutation p.F43L 0.25 tolerated(0.44) benign(0.033) TCGA-EK-A3GK-01 10 51483213 51483213 C G AGAP7 Missense_Mutation p.E85Q 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.546) TCGA-EK-A3GK-01 10 51769332 51769332 G T AGAP6 Nonsense_Mutation p.E483* 0.28 TCGA-EK-A3GK-01 10 55591180 55591180 C G PCDH15 Missense_Mutation p.R1366T 0.26 tolerated(0.18) benign(0.179) TCGA-EK-A3GK-01 10 60573642 60573642 G T BICC1 Missense_Mutation p.G810V 0.48 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 10 6139113 6139113 C T RBM17 Nonsense_Mutation p.Q29* 0.31 TCGA-EK-A3GK-01 10 61815703 61815703 C T ANK3 Missense_Mutation p.E4260K 0.25 benign(0.036) TCGA-EK-A3GK-01 10 61898737 61898737 C T ANK3 Missense_Mutation p.G908E 0.29 possibly_damaging(0.833) TCGA-EK-A3GK-01 10 64239642 64239642 C T ZNF365 Intron 0.49 TCGA-EK-A3GK-01 10 70332597 70332597 G C TET1 Missense_Mutation p.D168H 0.17 deleterious(0.03) possibly_damaging(0.761) TCGA-EK-A3GK-01 10 70441196 70441196 G A TET1 Missense_Mutation p.R1622Q 0.58 tolerated(0.38) benign(0.005) TCGA-EK-A3GK-01 10 70451841 70451841 G C TET1 3'UTR 0.32 TCGA-EK-A3GK-01 10 71164665 71164665 C G TACR2 Missense_Mutation p.E372Q 0.39 tolerated(1) benign(0.001) TCGA-EK-A3GK-01 10 72195141 72195141 C A NODAL Missense_Mutation p.W264C 0.37 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 10 73552953 73552953 C G CDH23 5'Flank 0.42 TCGA-EK-A3GK-01 10 73822547 73822547 C T SPOCK2 Missense_Mutation p.E416K 0.46 deleterious_low_confidence(0.02) unknown(0) TCGA-EK-A3GK-01 10 74451888 74451888 C G MCU 5'Flank 0.43 TCGA-EK-A3GK-01 10 75255400 75255400 C T PPP3CB Intron 0.13 TCGA-EK-A3GK-01 10 75277284 75277284 G C USP54 Missense_Mutation p.S967C 0.51 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-EK-A3GK-01 10 7759602 7759602 G C ITIH2 Missense_Mutation p.D161H 0.38 deleterious(0.01) probably_damaging(0.992) TCGA-EK-A3GK-01 10 79572015 79572015 G A DLG5 Silent p.I1382I 0.38 TCGA-EK-A3GK-01 10 79601771 79601771 G A DLG5 Silent p.I435I 0.41 TCGA-EK-A3GK-01 10 81072532 81072532 C T ZMIZ1 3'UTR 0.36 TCGA-EK-A3GK-01 10 84733553 84733553 G T NRG3 Missense_Mutation p.V432L 0.31 tolerated(0.65) benign(0.033) TCGA-EK-A3GK-01 10 85974065 85974065 C G CDHR1 Silent p.L756L 0.38 TCGA-EK-A3GK-01 10 87898651 87898651 C G GRID1 Silent p.L217L 0.31 TCGA-EK-A3GK-01 10 88911721 88911721 C T FAM35A Missense_Mutation p.H204Y 0.42 tolerated(0.06) benign(0.005) TCGA-EK-A3GK-01 10 93261075 93261075 G A HECTD2 Missense_Mutation p.E732K 0.37 tolerated(0.55) benign(0.044) TCGA-EK-A3GK-01 10 95458071 95458071 C G FRA10AC1 Missense_Mutation p.E54Q 0.26 tolerated(0.17) benign(0.002) TCGA-EK-A3GK-01 10 95719284 95719284 C G PIPSL RNA 0.40 TCGA-EK-A3GK-01 10 96066416 96066416 G C PLCE1 Missense_Mutation p.R1952T 0.36 deleterious(0) probably_damaging(0.967) TCGA-EK-A3GK-01 10 96100229 96100229 G A NOC3L Missense_Mutation p.H557Y 0.40 tolerated(0.07) probably_damaging(0.997) TCGA-EK-A3GK-01 10 96974621 96974621 G C C10orf129 Missense_Mutation p.K336N 0.45 tolerated(0.08) benign(0.252) TCGA-EK-A3GK-01 10 96974727 96974727 G A C10orf129 Missense_Mutation p.E372K 0.44 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 10 97453148 97453148 C T TCTN3 Silent p.P114P 0.31 TCGA-EK-A3GK-01 10 97632220 97632220 C G ENTPD1 3'UTR 0.30 TCGA-EK-A3GK-01 10 98182458 98182458 C T TLL2 Missense_Mutation p.G222E 0.41 deleterious(0.02) probably_damaging(0.99) TCGA-EK-A3GK-01 10 99677323 99677323 C T CRTAC1 Missense_Mutation p.D217N 0.45 tolerated(0.17) benign(0.036) TCGA-EK-A3GK-01 11 10024173 10024173 G A SBF2 Missense_Mutation p.S228F 0.29 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 11 100831650 100831650 C G ARHGAP42 Missense_Mutation p.I410M 0.35 deleterious(0) possibly_damaging(0.809) TCGA-EK-A3GK-01 11 102954050 102954050 C T DCUN1D5 Missense_Mutation p.D62N 0.17 tolerated(0.11) benign(0.178) TCGA-EK-A3GK-01 11 10483213 10483213 C T AMPD3 Silent p.I58I 0.11 TCGA-EK-A3GK-01 11 10533914 10533914 G C RNF141 3'UTR 0.39 TCGA-EK-A3GK-01 11 106810318 106810318 G A GUCY1A2 Silent p.L358L 0.28 TCGA-EK-A3GK-01 11 107420538 107420538 G C ALKBH8 Missense_Mutation p.H238D 0.42 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 11 110036067 110036067 G C ZC3H12C Missense_Mutation p.D753H 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-EK-A3GK-01 11 112126250 112126250 C T PLET1 Missense_Mutation p.D83N 0.49 tolerated(1) possibly_damaging(0.908) TCGA-EK-A3GK-01 11 117265190 117265190 G A CEP164 Missense_Mutation p.R914Q 0.40 tolerated(0.63) benign(0.059) TCGA-EK-A3GK-01 11 117863963 117863963 G A IL10RA Silent p.L125L 0.40 TCGA-EK-A3GK-01 11 118376214 118376214 G C KMT2A Missense_Mutation p.E3203Q 0.53 probably_damaging(0.934) TCGA-EK-A3GK-01 11 118390715 118390715 C T KMT2A Missense_Mutation p.R3789C 0.42 probably_damaging(0.935) TCGA-EK-A3GK-01 11 118393251 118393251 C T KMT2A 3'UTR 0.44 TCGA-EK-A3GK-01 11 118515382 118515382 G A PHLDB1 Intron 0.06 TCGA-EK-A3GK-01 11 118754635 118754635 C G CXCR5 5'UTR 0.44 TCGA-EK-A3GK-01 11 119050945 119050945 C T NLRX1 Missense_Mutation p.P739S 0.48 tolerated(0.49) benign(0.419) TCGA-EK-A3GK-01 11 119050953 119050953 G C NLRX1 Silent p.G741G 0.45 TCGA-EK-A3GK-01 11 119052817 119052817 C T NLRX1 Missense_Mutation p.P790L 0.33 deleterious(0.04) probably_damaging(0.973) TCGA-EK-A3GK-01 11 120984322 120984322 G A TECTA Missense_Mutation p.E229K 0.47 deleterious(0.03) benign(0.118) TCGA-EK-A3GK-01 11 121384885 121384885 G A SORL1 Missense_Mutation p.E356K 0.44 deleterious(0.02) possibly_damaging(0.453) TCGA-EK-A3GK-01 11 124180503 124180503 G C OR8D1 Missense_Mutation p.L54V 0.33 deleterious(0.01) benign(0.055) TCGA-EK-A3GK-01 11 124310324 124310324 G C OR8B8 Missense_Mutation p.L220V 0.36 deleterious_low_confidence(0.01) benign(0.11) TCGA-EK-A3GK-01 11 125707802 125707802 G A PATE4 Missense_Mutation p.G33E 0.42 tolerated(1) benign(0.079) TCGA-EK-A3GK-01 11 126316661 126316661 G C KIRREL3 Missense_Mutation p.S373C 0.38 deleterious(0) probably_damaging(0.935) TCGA-EK-A3GK-01 11 1269671 1269671 C A MUC5B Missense_Mutation p.S3854Y 0.34 unknown(0) TCGA-EK-A3GK-01 11 1270922 1270922 C G MUC5B Missense_Mutation p.S4271C 0.41 benign(0.278) TCGA-EK-A3GK-01 11 1271112 1271112 C T MUC5B Silent p.T4334T 0.42 TCGA-EK-A3GK-01 11 1271258 1271258 C T MUC5B Missense_Mutation p.S4383F 0.40 benign(0.153) TCGA-EK-A3GK-01 11 128806387 128806387 C T TP53AIP1 Intron 0.48 TCGA-EK-A3GK-01 11 133402239 133402239 C T OPCML 5'UTR 0.47 TCGA-EK-A3GK-01 11 134118818 134118818 G A THYN1 Silent p.F172F 0.33 TCGA-EK-A3GK-01 11 17190537 17190537 G A PIK3C2A Missense_Mutation p.S251L 0.39 deleterious_low_confidence(0.04) benign(0.003) TCGA-EK-A3GK-01 11 17190670 17190670 G T PIK3C2A Missense_Mutation p.H207N 0.29 deleterious_low_confidence(0.03) benign(0.11) TCGA-EK-A3GK-01 11 17394085 17394085 G A NCR3LG1 3'UTR 0.50 TCGA-EK-A3GK-01 11 17432122 17432122 C T ABCC8 Missense_Mutation p.D879N 0.54 tolerated(0.07) possibly_damaging(0.49) TCGA-EK-A3GK-01 11 17741623 17741623 C T MYOD1 Silent p.C98C 0.50 TCGA-EK-A3GK-01 11 18105253 18105253 G T SAAL1 Silent p.L356L 0.47 TCGA-EK-A3GK-01 11 19970352 19970352 C T NAV2 Missense_Mutation p.R814W 0.23 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 11 213324 213324 G T RIC8A Nonsense_Mutation p.E467* 0.22 TCGA-EK-A3GK-01 11 27741990 27741990 G C RP11-587D21.4 Intron 0.44 TCGA-EK-A3GK-01 11 3114171 3114171 C G OSBPL5 Missense_Mutation p.E686D 0.37 tolerated(0.52) benign(0.297) TCGA-EK-A3GK-01 11 45793181 45793181 G A CTD-2210P24.4 Missense_Mutation p.E16K 0.56 possibly_damaging(0.486) TCGA-EK-A3GK-01 11 4661593 4661593 C A OR51D1 Missense_Mutation p.F191L 0.27 deleterious(0) possibly_damaging(0.826) TCGA-EK-A3GK-01 11 46691034 46691034 G A ATG13 Silent p.L509L 0.37 TCGA-EK-A3GK-01 11 5153017 5153017 C T OR52A5 Missense_Mutation p.V286I 0.38 tolerated(0.09) benign(0.248) TCGA-EK-A3GK-01 11 55594997 55594997 C T OR5L2 Silent p.F101F 0.21 TCGA-EK-A3GK-01 11 562206 562206 G A RASSF7 Silent p.L84L 0.44 TCGA-EK-A3GK-01 11 5730382 5730382 C G TRIM22 Nonsense_Mutation p.S334* 0.16 TCGA-EK-A3GK-01 11 58170013 58170013 C G OR5B3 Silent p.L290L 0.44 TCGA-EK-A3GK-01 11 58892532 58892532 G A FAM111B Missense_Mutation p.R321K 0.36 tolerated(0.12) benign(0.014) TCGA-EK-A3GK-01 11 59132687 59132687 C A OR5AN1 Missense_Mutation p.F252L 0.32 tolerated(0.14) possibly_damaging(0.521) TCGA-EK-A3GK-01 11 59343626 59343626 C A OSBP 3'UTR 0.48 TCGA-EK-A3GK-01 11 59603388 59603388 C T GIF Silent p.L322L 0.10 TCGA-EK-A3GK-01 11 60182921 60182921 C G MS4A14 Missense_Mutation p.F193L 0.24 tolerated(0.06) possibly_damaging(0.669) TCGA-EK-A3GK-01 11 60690641 60690641 G A TMEM109 3'UTR 0.42 TCGA-EK-A3GK-01 11 60690680 60690680 G A TMEM109 3'UTR 0.48 TCGA-EK-A3GK-01 11 60714117 60714117 G C SLC15A3 Silent p.L245L 0.14 TCGA-EK-A3GK-01 11 619042 619042 G A CDHR5 Missense_Mutation p.S506F 0.37 deleterious(0.01) possibly_damaging(0.806) TCGA-EK-A3GK-01 11 62296617 62296617 C G AHNAK Missense_Mutation p.E1758Q 0.11 possibly_damaging(0.607) TCGA-EK-A3GK-01 11 62300022 62300022 C G AHNAK Missense_Mutation p.E623Q 0.38 possibly_damaging(0.898) TCGA-EK-A3GK-01 11 62400673 62400673 G A GANAB Missense_Mutation p.S256F 0.51 tolerated(0.27) benign(0.301) TCGA-EK-A3GK-01 11 62553839 62553839 C G TAF6L Missense_Mutation p.H356Q 0.33 deleterious(0.01) possibly_damaging(0.47) TCGA-EK-A3GK-01 11 62571010 62571010 C T NXF1 Missense_Mutation p.D84N 0.29 tolerated(0.49) benign(0.001) TCGA-EK-A3GK-01 11 62571336 62571336 C T NXF1 Missense_Mutation p.R48Q 0.41 tolerated(0.41) benign(0.001) TCGA-EK-A3GK-01 11 62571352 62571352 C T NXF1 Missense_Mutation p.G43S 0.33 tolerated(0.23) benign(0.137) TCGA-EK-A3GK-01 11 62571445 62571445 C G NXF1 Missense_Mutation p.D12H 0.33 deleterious(0.02) probably_damaging(0.913) TCGA-EK-A3GK-01 11 62572855 62572855 C T NXF1 5'UTR 0.42 TCGA-EK-A3GK-01 11 6265412 6265412 G C CNGA4 Missense_Mutation p.D501H 0.19 deleterious(0) benign(0.186) TCGA-EK-A3GK-01 11 6341334 6341334 G C PRKCDBP Missense_Mutation p.L125V 0.14 tolerated(0.44) benign(0.004) TCGA-EK-A3GK-01 11 63722916 63722916 C G NAA40 3'UTR 0.36 TCGA-EK-A3GK-01 11 64012723 64012723 C G PPP1R14B Missense_Mutation p.E99Q 0.42 deleterious(0.03) benign(0.42) TCGA-EK-A3GK-01 11 64012732 64012732 C T PPP1R14B Missense_Mutation p.D96N 0.39 tolerated(0.1) possibly_damaging(0.883) TCGA-EK-A3GK-01 11 64112488 64112488 G A CCDC88B Silent p.R825R 0.31 TCGA-EK-A3GK-01 11 64514031 64514031 G A PYGM 3'UTR 0.36 TCGA-EK-A3GK-01 11 64669734 64669734 G A ATG2A Missense_Mutation p.S1301L 0.14 deleterious(0.04) benign(0.044) TCGA-EK-A3GK-01 11 64695769 64695769 C A PPP2R5B Silent p.L198L 0.43 TCGA-EK-A3GK-01 11 64954750 64954750 C G CAPN1 Missense_Mutation p.S275C 0.45 deleterious(0) probably_damaging(0.984) TCGA-EK-A3GK-01 11 64956162 64956162 C G CAPN1 Silent p.L370L 0.50 TCGA-EK-A3GK-01 11 64974041 64974041 C A CAPN1 Missense_Mutation p.F487L 0.43 tolerated(0.32) benign(0.007) TCGA-EK-A3GK-01 11 6500102 6500102 C G ARFIP2 Missense_Mutation p.E135Q 0.48 deleterious(0) possibly_damaging(0.676) TCGA-EK-A3GK-01 11 65308423 65308423 C T LTBP3 Missense_Mutation p.E966K 0.41 deleterious(0) possibly_damaging(0.653) TCGA-EK-A3GK-01 11 65429479 65429479 C T RELA Missense_Mutation p.E39K 0.42 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 11 66034452 66034452 G C KLC2 3'UTR 0.35 TCGA-EK-A3GK-01 11 66044847 66044847 C T RAB1B 3'UTR 0.60 TCGA-EK-A3GK-01 11 6661191 6661191 C A DCHS1 Missense_Mutation p.D552Y 0.32 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 11 67022514 67022514 G A KDM2A Silent p.Q1159Q 0.46 TCGA-EK-A3GK-01 11 67559472 67559472 G T FAM86C2P RNA 0.24 TCGA-EK-A3GK-01 11 69588887 69588887 C T FGF4 Missense_Mutation p.E117K 0.42 deleterious(0) possibly_damaging(0.84) TCGA-EK-A3GK-01 11 71712753 71712753 G A IL18BP Intron 0.32 TCGA-EK-A3GK-01 11 71713891 71713891 G A IL18BP 3'Flank 0.39 TCGA-EK-A3GK-01 11 73825446 73825446 C T C2CD3 Silent p.V571V 0.43 TCGA-EK-A3GK-01 11 7439255 7439255 G C SYT9 Missense_Mutation p.K411N 0.19 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 11 74700060 74700060 C G NEU3 5'UTR 0.32 TCGA-EK-A3GK-01 11 7489774 7489774 G A SYT9 3'UTR 0.31 TCGA-EK-A3GK-01 11 7672960 7672960 G A PPFIBP2 Missense_Mutation p.R774K 0.47 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 11 77911809 77911809 C T USP35 Silent p.F384F 0.44 TCGA-EK-A3GK-01 11 82997076 82997076 C T CCDC90B 5'UTR 0.30 TCGA-EK-A3GK-01 11 83169587 83169587 C G DLG2 3'UTR 0.50 TCGA-EK-A3GK-01 11 85436841 85436841 G T SYTL2 Missense_Mutation p.P220H 0.29 tolerated(0.12) benign(0.122) TCGA-EK-A3GK-01 11 85436849 85436849 G A SYTL2 Silent p.V217V 0.26 TCGA-EK-A3GK-01 11 89155129 89155129 G A NOX4 Silent p.F190F 0.38 TCGA-EK-A3GK-01 11 93517706 93517706 C T MED17 Silent p.I9I 0.24 TCGA-EK-A3GK-01 11 94204765 94204765 G C MRE11A Missense_Mutation p.L274V 0.50 deleterious(0) probably_damaging(0.994) TCGA-EK-A3GK-01 11 94862392 94862392 C G ENDOD1 Missense_Mutation p.I384M 0.33 tolerated(0.18) benign(0.019) TCGA-EK-A3GK-01 11 99715931 99715931 C T CNTN5 Nonsense_Mutation p.Q172* 0.38 TCGA-EK-A3GK-01 12 100441743 100441743 G C UHRF1BP1L Missense_Mutation p.S1317C 0.41 deleterious(0.02) probably_damaging(0.947) TCGA-EK-A3GK-01 12 100482793 100482793 C T UHRF1BP1L Silent p.V307V 0.35 TCGA-EK-A3GK-01 12 100784871 100784871 C T SLC17A8 Silent p.F149F 0.34 TCGA-EK-A3GK-01 12 101684594 101684594 C G UTP20 Silent p.L273L 0.38 TCGA-EK-A3GK-01 12 104391268 104391268 C T GLT8D2 Missense_Mutation p.E150K 0.40 tolerated(0.49) benign(0.028) TCGA-EK-A3GK-01 12 106633787 106633787 G A CKAP4 Missense_Mutation p.S275F 0.39 deleterious(0) possibly_damaging(0.88) TCGA-EK-A3GK-01 12 107279969 107279969 G A RIC8B 3'UTR 0.58 TCGA-EK-A3GK-01 12 107280611 107280611 C G RIC8B 3'Flank 0.40 TCGA-EK-A3GK-01 12 108603970 108603970 G C WSCD2 Silent p.V190V 0.44 TCGA-EK-A3GK-01 12 109042471 109042471 G C CORO1C Silent p.V405V 0.05 TCGA-EK-A3GK-01 12 110252645 110252646 - A TRPV4 5'UTR 0.26 TCGA-EK-A3GK-01 12 110959986 110959986 G A RAD9B Missense_Mutation p.D299N 0.29 tolerated(0.18) benign(0.056) TCGA-EK-A3GK-01 12 111157736 111157736 C G PPP1CC 3'UTR 0.40 TCGA-EK-A3GK-01 12 111947712 111947712 G A ATXN2 Missense_Mutation p.S776L 0.35 benign(0.062) TCGA-EK-A3GK-01 12 112119469 112119469 G C BRAP Missense_Mutation p.H139D 0.26 deleterious(0.02) benign(0.147) TCGA-EK-A3GK-01 12 112492280 112492280 G A NAA25 Nonsense_Mutation p.R514* 0.57 TCGA-EK-A3GK-01 12 112843702 112843702 C T RPL6 Silent p.R223R 0.41 TCGA-EK-A3GK-01 12 11338902 11338902 C T TAS2R42 Silent p.L214L 0.38 TCGA-EK-A3GK-01 12 113407824 113407824 C T OAS3 3'UTR 0.55 TCGA-EK-A3GK-01 12 113442962 113442962 C G OAS2 Missense_Mutation p.S468C 0.46 deleterious(0.01) probably_damaging(0.967) TCGA-EK-A3GK-01 12 113531867 113531867 G T DTX1 Missense_Mutation p.R397L 0.44 deleterious(0.02) possibly_damaging(0.491) TCGA-EK-A3GK-01 12 113638562 113638562 G C IQCD Intron 0.33 TCGA-EK-A3GK-01 12 114792463 114792463 G A TBX5 3'UTR 0.32 TCGA-EK-A3GK-01 12 11545880 11545880 G A PRB2 Nonsense_Mutation p.Q378* 0.25 TCGA-EK-A3GK-01 12 118469182 118469182 C G RFC5 3'UTR 0.36 TCGA-EK-A3GK-01 12 118597971 118597971 C G TAOK3 Missense_Mutation p.E778Q 0.39 deleterious(0.01) possibly_damaging(0.883) TCGA-EK-A3GK-01 12 118598015 118598015 C G TAOK3 Missense_Mutation p.R763T 0.38 deleterious(0) possibly_damaging(0.833) TCGA-EK-A3GK-01 12 119961580 119961580 G C CCDC60 Missense_Mutation p.E396Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 12 120941466 120941466 G C COQ5 3'UTR 0.38 TCGA-EK-A3GK-01 12 120972204 120972204 C T RNF10 5'UTR 0.39 TCGA-EK-A3GK-01 12 121175948 121175948 C G ACADS Intron 0.16 TCGA-EK-A3GK-01 12 121647982 121647982 C T P2RX4 Silent p.C5C 0.56 TCGA-EK-A3GK-01 12 121735451 121735451 G C CAMKK2 5'UTR 0.32 TCGA-EK-A3GK-01 12 122685407 122685407 G A LRRC43 Missense_Mutation p.E579K 0.39 deleterious(0.02) probably_damaging(0.934) TCGA-EK-A3GK-01 12 12300468 12300468 G A LRP6 Nonsense_Mutation p.Q1077* 0.50 TCGA-EK-A3GK-01 12 124499071 124499071 C G ZNF664 3'UTR 0.57 TCGA-EK-A3GK-01 12 124915301 124915301 G A NCOR2 Silent p.L305L 0.39 TCGA-EK-A3GK-01 12 125438697 125438697 C A DHX37 Missense_Mutation p.Q838H 0.32 tolerated(0.14) benign(0.104) TCGA-EK-A3GK-01 12 128900152 128900152 C T TMEM132C Missense_Mutation p.L321F 0.48 tolerated(0.74) benign(0.007) TCGA-EK-A3GK-01 12 131476909 131476909 C G GPR133 Missense_Mutation p.S313W 0.14 deleterious(0) probably_damaging(0.995) TCGA-EK-A3GK-01 12 132445647 132445647 C T EP400 Silent p.L161L 0.32 TCGA-EK-A3GK-01 12 148731 148731 C T AC026369.1 3'Flank 0.24 TCGA-EK-A3GK-01 12 14930502 14930502 G C H2AFJ 3'UTR 0.13 TCGA-EK-A3GK-01 12 15637046 15637046 G C PTPRO Missense_Mutation p.E72Q 0.65 tolerated_low_confidence(0.24) benign(0.021) TCGA-EK-A3GK-01 12 15793665 15793665 G A EPS8 Missense_Mutation p.A598V 0.20 tolerated(0.31) benign(0.066) TCGA-EK-A3GK-01 12 20799728 20799728 C G PDE3A Missense_Mutation p.F803L 0.33 tolerated(0.68) benign(0.018) TCGA-EK-A3GK-01 12 26752981 26752981 C T ITPR2 Missense_Mutation p.R1247Q 0.53 tolerated(0.55) benign(0.067) TCGA-EK-A3GK-01 12 27467972 27467972 G C STK38L Missense_Mutation p.G233R 0.53 deleterious(0) probably_damaging(0.944) TCGA-EK-A3GK-01 12 27933812 27933812 G C KLHL42 Missense_Mutation p.Q183H 0.47 tolerated(0.15) possibly_damaging(0.461) TCGA-EK-A3GK-01 12 2800853 2800853 G T CACNA1C 3'Flank 0.36 TCGA-EK-A3GK-01 12 30792516 30792516 G T IPO8 Missense_Mutation p.H808N 0.47 tolerated(1) benign(0.001) TCGA-EK-A3GK-01 12 30826980 30826980 C G IPO8 Missense_Mutation p.E285Q 0.39 deleterious(0.01) possibly_damaging(0.685) TCGA-EK-A3GK-01 12 32945601 32945601 C T PKP2 Missense_Mutation p.E852K 0.32 deleterious(0.01) possibly_damaging(0.67) TCGA-EK-A3GK-01 12 3763514 3763514 C A EFCAB4B Nonsense_Mutation p.E304* 0.46 TCGA-EK-A3GK-01 12 41961654 41961654 G A PDZRN4 Missense_Mutation p.E513K 0.43 tolerated(0.1) benign(0.021) TCGA-EK-A3GK-01 12 46300166 46300166 C T ARID2 3'UTR 0.45 TCGA-EK-A3GK-01 12 48175589 48175589 G C SLC48A1 3'UTR 0.41 TCGA-EK-A3GK-01 12 49063045 49063045 G C KANSL2 Silent p.L240L 0.37 TCGA-EK-A3GK-01 12 49161260 49161260 G A ADCY6 3'UTR 0.40 TCGA-EK-A3GK-01 12 49483753 49483753 C G DHH Missense_Mutation p.L360F 0.28 tolerated(0.24) probably_damaging(0.989) TCGA-EK-A3GK-01 12 50059693 50059693 T G FMNL3 Splice_Site p.X98_splice 0.41 TCGA-EK-A3GK-01 12 50195664 50195664 C T NCKAP5L Silent p.Q106Q 0.53 TCGA-EK-A3GK-01 12 50398061 50398061 G T RACGAP1 Missense_Mutation p.S151Y 0.46 deleterious(0.02) probably_damaging(0.982) TCGA-EK-A3GK-01 12 50523896 50523896 C G CERS5 3'UTR 0.32 TCGA-EK-A3GK-01 12 50575814 50575814 G C LIMA1 Missense_Mutation p.Q384E 0.37 deleterious(0.01) possibly_damaging(0.689) TCGA-EK-A3GK-01 12 50725554 50725554 G A FAM186A Silent p.I2249I 0.33 TCGA-EK-A3GK-01 12 52163751 52163751 G C SCN8A Missense_Mutation p.D1158H 0.19 deleterious(0.02) possibly_damaging(0.866) TCGA-EK-A3GK-01 12 52845379 52845379 C T KRT6B Missense_Mutation p.E162K 0.16 deleterious(0.01) possibly_damaging(0.844) TCGA-EK-A3GK-01 12 53509913 53509913 G A SOAT2 Silent p.L247L 0.37 TCGA-EK-A3GK-01 12 53575708 53575708 C G ZNF740 5'UTR 0.30 TCGA-EK-A3GK-01 12 53874871 53874871 C G MAP3K12 3'Flank 0.41 TCGA-EK-A3GK-01 12 53880774 53880774 C T MAP3K12 Missense_Mutation p.M134I 0.42 tolerated(1) benign(0.032) TCGA-EK-A3GK-01 12 54404916 54404916 G A HOXC8 Silent p.Q160Q 0.08 TCGA-EK-A3GK-01 12 54674604 54674604 G C HNRNPA1 Missense_Mutation p.E5Q 0.40 tolerated(0.12) benign(0.347) TCGA-EK-A3GK-01 12 54929976 54929976 C T NCKAP1L Missense_Mutation p.S1007F 0.27 deleterious(0) probably_damaging(0.92) TCGA-EK-A3GK-01 12 56137352 56137352 G C GDF11 Missense_Mutation p.L84F 0.54 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 12 56489566 56489566 G A ERBB3 Missense_Mutation p.M677I 0.42 deleterious(0.01) possibly_damaging(0.77) TCGA-EK-A3GK-01 12 56601988 56601988 C T RNF41 Missense_Mutation p.E153K 0.42 tolerated(1) benign(0.235) TCGA-EK-A3GK-01 12 56630940 56630940 T C SLC39A5 Missense_Mutation p.F432S 0.40 deleterious(0) possibly_damaging(0.685) TCGA-EK-A3GK-01 12 56737674 56737674 G A STAT2 Missense_Mutation p.S783L 0.38 tolerated_low_confidence(0.25) benign(0.015) TCGA-EK-A3GK-01 12 56740733 56740733 G A STAT2 Silent p.I577I 0.81 TCGA-EK-A3GK-01 12 56844627 56844627 C G MIP 3'UTR 0.28 TCGA-EK-A3GK-01 12 57422408 57422408 C T MYO1A 3'UTR 0.48 TCGA-EK-A3GK-01 12 57522810 57522810 C G LRP1 Missense_Mutation p.I21M 0.34 benign(0.073) TCGA-EK-A3GK-01 12 57619676 57619676 C T NXPH4 3'UTR 0.41 TCGA-EK-A3GK-01 12 57944127 57944127 C T KIF5A Silent p.L25L 0.31 TCGA-EK-A3GK-01 12 58145321 58145321 C T CDK4 Silent p.L60L 0.22 TCGA-EK-A3GK-01 12 64536560 64536560 G A SRGAP1 3'UTR 0.33 TCGA-EK-A3GK-01 12 64664437 64664437 G C C12orf56 Missense_Mutation p.Q388E 0.64 tolerated(0.62) benign(0.028) TCGA-EK-A3GK-01 12 6804739 6804739 C G PIANP Silent p.L228L 0.46 TCGA-EK-A3GK-01 12 6884456 6884456 C G LAG3 Missense_Mutation p.P267A 0.23 deleterious(0.01) possibly_damaging(0.753) TCGA-EK-A3GK-01 12 6933901 6933901 C G GPR162 Silent p.L279L 0.53 TCGA-EK-A3GK-01 12 69973344 69973344 G C FRS2 3'UTR 0.36 TCGA-EK-A3GK-01 12 7187958 7187958 C A C1R Missense_Mutation p.D614Y 0.17 deleterious(0.03) possibly_damaging(0.781) TCGA-EK-A3GK-01 12 72057194 72057194 G A ZFC3H1 Missense_Mutation p.S66F 0.43 tolerated_low_confidence(0.25) possibly_damaging(0.485) TCGA-EK-A3GK-01 12 7249310 7249310 C G C1RL Missense_Mutation p.E381Q 0.46 tolerated(0.11) benign(0.117) TCGA-EK-A3GK-01 12 7917832 7917832 C G NANOGNB 5'UTR 0.05 TCGA-EK-A3GK-01 12 80191124 80191124 G A PPP1R12A Missense_Mutation p.R715C 0.43 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 12 80328896 80328896 G T PPP1R12A 5'UTR 0.43 TCGA-EK-A3GK-01 12 8073935 8073935 C T SLC2A3 3'UTR 0.33 TCGA-EK-A3GK-01 12 81102693 81102693 C G MYF6 Missense_Mutation p.S228W 0.22 deleterious(0.03) probably_damaging(0.992) TCGA-EK-A3GK-01 12 82152244 82152244 G C PPFIA2 5'UTR 0.41 TCGA-EK-A3GK-01 12 86198527 86198527 G C RASSF9 Missense_Mutation p.Q421E 0.34 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 12 88542183 88542183 G C TMTC3 Missense_Mutation p.D31H 0.15 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 12 9322060 9322060 G C PZP Nonsense_Mutation p.S656* 0.28 TCGA-EK-A3GK-01 12 95422265 95422265 C G NR2C1 Missense_Mutation p.E477Q 0.26 deleterious(0.01) possibly_damaging(0.517) TCGA-EK-A3GK-01 12 95604511 95604511 G C FGD6 Silent p.L183L 0.28 TCGA-EK-A3GK-01 12 96394743 96394743 C G LTA4H 3'UTR 0.17 TCGA-EK-A3GK-01 12 99019962 99019962 C T IKBIP Missense_Mutation p.E294K 0.43 deleterious(0) probably_damaging(0.968) TCGA-EK-A3GK-01 12 99019972 99019972 C T IKBIP Silent p.L290L 0.42 TCGA-EK-A3GK-01 12 99020013 99020013 C G IKBIP Missense_Mutation p.E277Q 0.37 deleterious(0.01) benign(0.215) TCGA-EK-A3GK-01 12 99020210 99020210 C G IKBIP Missense_Mutation p.R211T 0.33 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 13 101287313 101287313 C G TMTC4 Missense_Mutation p.G447R 0.39 deleterious(0) possibly_damaging(0.897) TCGA-EK-A3GK-01 13 101288827 101288827 C G TMTC4 Silent p.L387L 0.08 TCGA-EK-A3GK-01 13 101735534 101735534 C T NALCN Missense_Mutation p.R1200K 0.23 deleterious(0) probably_damaging(0.947) TCGA-EK-A3GK-01 13 103268843 103268843 C G TPP2 Missense_Mutation p.S163C 0.10 deleterious(0.02) benign(0.02) TCGA-EK-A3GK-01 13 108886349 108886349 C G ABHD13 3'UTR 0.32 TCGA-EK-A3GK-01 13 109445889 109445889 G C MYO16 Missense_Mutation p.Q192H 0.31 deleterious(0.04) probably_damaging(0.984) TCGA-EK-A3GK-01 13 110819508 110819508 G A COL4A1 Nonsense_Mutation p.Q1316* 0.33 TCGA-EK-A3GK-01 13 111176396 111176396 G C RAB20 Silent p.L107L 0.47 TCGA-EK-A3GK-01 13 111935688 111935688 C T ARHGEF7 Missense_Mutation p.S664L 0.67 deleterious(0.05) benign(0.385) TCGA-EK-A3GK-01 13 113139736 113139736 G C TUBGCP3 3'UTR 0.33 TCGA-EK-A3GK-01 13 113739462 113739462 G A MCF2L Silent p.Q739Q 0.48 TCGA-EK-A3GK-01 13 113899366 113899366 C T CUL4A Silent p.L479L 0.45 TCGA-EK-A3GK-01 13 113918351 113918351 G A CUL4A 3'Flank 0.47 TCGA-EK-A3GK-01 13 113976676 113976676 C T LAMP1 Silent p.I398I 0.50 TCGA-EK-A3GK-01 13 114322338 114322338 G A GRK1 Missense_Mutation p.G213S 0.32 deleterious(0.01) probably_damaging(1) TCGA-EK-A3GK-01 13 114325968 114325968 G A GRK1 Missense_Mutation p.D328N 0.42 tolerated(0.49) benign(0.172) TCGA-EK-A3GK-01 13 19753560 19753560 G C TUBA3C Missense_Mutation p.F49L 0.41 tolerated_low_confidence(0.05) benign(0.304) TCGA-EK-A3GK-01 13 20224391 20224391 G A MPHOSPH8 Missense_Mutation p.E523K 0.35 tolerated(0.13) possibly_damaging(0.459) TCGA-EK-A3GK-01 13 21006309 21006309 C T CRYL1 Missense_Mutation p.E189K 0.32 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-EK-A3GK-01 13 23913856 23913856 G A SACS Missense_Mutation p.P1387S 0.26 benign(0.242) TCGA-EK-A3GK-01 13 25171562 25171562 C T RP11-556N21.1 RNA 0.38 TCGA-EK-A3GK-01 13 25473667 25473667 C T CENPJ Missense_Mutation p.E961K 0.08 deleterious(0) probably_damaging(0.927) TCGA-EK-A3GK-01 13 25915622 25915622 C G NUPL1 3'UTR 0.38 TCGA-EK-A3GK-01 13 28631600 28631600 C T FLT3 Splice_Site p.X123_splice 0.38 TCGA-EK-A3GK-01 13 32863860 32863860 G A FRY Missense_Mutation p.E2854K 0.39 tolerated(0.35) benign(0.048) TCGA-EK-A3GK-01 13 41947823 41947823 G A NAA16 Missense_Mutation p.E736K 0.35 deleterious(0.04) benign(0.016) TCGA-EK-A3GK-01 13 42877015 42877015 C A AKAP11 Nonsense_Mutation p.S1378* 0.36 TCGA-EK-A3GK-01 13 46288084 46288084 C T SPERT Silent p.F308F 0.29 TCGA-EK-A3GK-01 13 48923137 48923137 G T RB1 Missense_Mutation p.W195C 0.41 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 13 50204667 50204667 C T ARL11 Silent p.L28L 0.23 TCGA-EK-A3GK-01 13 50206005 50206005 C A ARL11 3'UTR 0.43 TCGA-EK-A3GK-01 13 50285123 50285123 C G KPNA3 Missense_Mutation p.L269F 0.20 deleterious(0.01) possibly_damaging(0.689) TCGA-EK-A3GK-01 13 52605933 52605933 G A UTP14C 3'UTR 0.48 TCGA-EK-A3GK-01 13 52730376 52730376 C G NEK3 5'UTR 0.19 TCGA-EK-A3GK-01 13 53030687 53030687 C G CKAP2 Missense_Mutation p.L34V 0.12 deleterious(0.01) benign(0.165) TCGA-EK-A3GK-01 13 61041493 61041493 G A TDRD3 Missense_Mutation p.E159K 0.38 deleterious(0) benign(0.444) TCGA-EK-A3GK-01 13 70535470 70535470 G A KLHL1 Missense_Mutation p.L263F 0.50 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 13 70681805 70681805 G A KLHL1 Silent p.F9F 0.36 TCGA-EK-A3GK-01 13 76395627 76395627 C G LMO7 Nonsense_Mutation p.S608* 0.30 TCGA-EK-A3GK-01 13 76415797 76415797 C G LMO7 Missense_Mutation p.L1004V 0.31 tolerated(0.47) benign(0.008) TCGA-EK-A3GK-01 13 84452893 84452893 C G SLITRK1 3'UTR 0.18 TCGA-EK-A3GK-01 13 84454368 84454368 G T SLITRK1 Silent p.L425L 0.35 TCGA-EK-A3GK-01 13 84454386 84454386 G C SLITRK1 Missense_Mutation p.F419L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 13 84454440 84454440 G A SLITRK1 Silent p.L401L 0.32 TCGA-EK-A3GK-01 13 84454449 84454449 G A SLITRK1 Silent p.Y398Y 0.32 TCGA-EK-A3GK-01 13 84454521 84454521 G C SLITRK1 Silent p.L374L 0.42 TCGA-EK-A3GK-01 13 84454935 84454935 G A SLITRK1 Silent p.I236I 0.34 TCGA-EK-A3GK-01 13 84455052 84455052 G A SLITRK1 Silent p.V197V 0.27 TCGA-EK-A3GK-01 13 86368731 86368731 C T SLITRK6 Missense_Mutation p.R638K 0.30 tolerated(1) benign(0.025) TCGA-EK-A3GK-01 13 97639486 97639486 G C OXGR1 Missense_Mutation p.N176K 0.15 tolerated(0.46) benign(0.027) TCGA-EK-A3GK-01 13 99567632 99567632 G A DOCK9 Silent p.L281L 0.45 TCGA-EK-A3GK-01 14 102372772 102372772 G C PPP2R5C Missense_Mutation p.E384Q 0.34 deleterious(0) probably_damaging(0.977) TCGA-EK-A3GK-01 14 102467314 102467314 C G DYNC1H1 Silent p.L1366L 0.07 TCGA-EK-A3GK-01 14 102474550 102474550 G A DYNC1H1 Silent p.V1951V 0.66 TCGA-EK-A3GK-01 14 103399905 103399909 TATAA - CDC42BPB 3'UTR 0.20 TCGA-EK-A3GK-01 14 104219456 104219456 G A PPP1R13B Nonsense_Mutation p.Q237* 0.15 TCGA-EK-A3GK-01 14 104380302 104380302 C T C14orf2 Silent p.L65L 0.33 TCGA-EK-A3GK-01 14 105178822 105178822 C T INF2 Silent p.L848L 0.47 TCGA-EK-A3GK-01 14 106054140 106054140 C G IGHA2 Missense_Mutation p.G127R 0.45 deleterious(0) benign(0.243) TCGA-EK-A3GK-01 14 106054630 106054630 C A IGHA2 Nonsense_Mutation p.E35* 0.36 TCGA-EK-A3GK-01 14 106110830 106110830 C T IGHG2 Intron 0.33 TCGA-EK-A3GK-01 14 106206445 106206445 G C IGHG1 Silent p.L357L 0.04 TCGA-EK-A3GK-01 14 106667619 106667619 G A IGHV3-20 Silent p.L105L 0.42 TCGA-EK-A3GK-01 14 20528220 20528220 G C OR4L1 Missense_Mutation p.G6A 0.44 tolerated(0.48) benign(0.002) TCGA-EK-A3GK-01 14 20528807 20528807 G A OR4L1 Missense_Mutation p.D202N 0.23 tolerated(0.56) benign(0.119) TCGA-EK-A3GK-01 14 20852329 20852329 G A TEP1 Silent p.F1134F 0.34 TCGA-EK-A3GK-01 14 21058829 21058829 C T RNASE12 Silent p.V18V 0.52 TCGA-EK-A3GK-01 14 21109728 21109728 C G OR6S1 Silent p.L41L 0.23 TCGA-EK-A3GK-01 14 21861729 21861729 C G CHD8 Missense_Mutation p.L2075F 0.15 tolerated_low_confidence(0.2) possibly_damaging(0.587) TCGA-EK-A3GK-01 14 22237053 22237053 G A TRAV6 Missense_Mutation p.E44K 0.56 tolerated(0.6) possibly_damaging(0.493) TCGA-EK-A3GK-01 14 23531480 23531480 G C ACIN1 Nonsense_Mutation p.S1057* 0.25 TCGA-EK-A3GK-01 14 23533373 23533373 G A ACIN1 Missense_Mutation p.R904C 0.40 probably_damaging(0.978) TCGA-EK-A3GK-01 14 23745586 23745586 G A HOMEZ Missense_Mutation p.S284F 0.38 deleterious(0.01) possibly_damaging(0.736) TCGA-EK-A3GK-01 14 23896894 23896894 C G MYH7 Missense_Mutation p.K596N 0.56 deleterious(0) probably_damaging(0.96) TCGA-EK-A3GK-01 14 23899789 23899789 C T MYH7 Missense_Mutation p.E327K 0.35 deleterious(0.03) possibly_damaging(0.906) TCGA-EK-A3GK-01 14 24590647 24590647 C T DCAF11 Silent p.L440L 0.34 TCGA-EK-A3GK-01 14 24649654 24649654 G C IPO4 Silent p.L1080L 0.30 TCGA-EK-A3GK-01 14 24775311 24775311 C G CIDEB Missense_Mutation p.E123D 0.05 tolerated(0.34) benign(0.422) TCGA-EK-A3GK-01 14 24887457 24887457 C G NYNRIN 3'UTR 0.32 TCGA-EK-A3GK-01 14 28734085 28734085 T A BNIP3P1 RNA 0.17 TCGA-EK-A3GK-01 14 28734086 28734086 C T BNIP3P1 RNA 0.17 TCGA-EK-A3GK-01 14 30046635 30046635 C G PRKD1 Missense_Mutation p.E850Q 0.36 tolerated(0.13) benign(0.175) TCGA-EK-A3GK-01 14 31598191 31598191 C T HECTD1 Silent p.R1462R 0.35 TCGA-EK-A3GK-01 14 33291446 33291446 C G AKAP6 Nonsense_Mutation p.S1476* 0.27 TCGA-EK-A3GK-01 14 33292215 33292215 C G AKAP6 Silent p.V1732V 0.35 TCGA-EK-A3GK-01 14 36005220 36005220 C T INSM2 3'UTR 0.38 TCGA-EK-A3GK-01 14 39651657 39651657 C T PNN 3'UTR 0.30 TCGA-EK-A3GK-01 14 39815196 39815196 C G CTAGE5 Silent p.L645L 0.34 TCGA-EK-A3GK-01 14 45414681 45414681 C T KLHL28 Missense_Mutation p.D151N 0.50 deleterious(0.04) possibly_damaging(0.744) TCGA-EK-A3GK-01 14 45553447 45553447 C T PRPF39 5'UTR 0.38 TCGA-EK-A3GK-01 14 50235051 50235051 G T KLHDC2 5'UTR 0.36 TCGA-EK-A3GK-01 14 50612206 50612206 G C SOS2 Silent p.L831L 0.33 TCGA-EK-A3GK-01 14 56078923 56078923 G C KTN1 Missense_Mutation p.D53H 0.26 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 14 56111095 56111095 G A KTN1 Intron 0.27 TCGA-EK-A3GK-01 14 57877042 57877042 G A NAA30 3'UTR 0.22 TCGA-EK-A3GK-01 14 58605892 58605892 G A C14orf37 Missense_Mutation p.S62L 0.49 tolerated(0.07) possibly_damaging(0.504) TCGA-EK-A3GK-01 14 58765315 58765315 G A ARID4A 5'UTR 0.38 TCGA-EK-A3GK-01 14 64600860 64600860 C T SYNE2 Missense_Mutation p.S4863F 0.40 probably_damaging(0.999) TCGA-EK-A3GK-01 14 64680939 64680939 G A SYNE2 Missense_Mutation p.E6362K 0.30 probably_damaging(0.999) TCGA-EK-A3GK-01 14 67759227 67759227 G A MPP5 Splice_Site p.X123_splice 0.65 TCGA-EK-A3GK-01 14 67759236 67759236 G A MPP5 Missense_Mutation p.D126N 0.61 deleterious(0.03) benign(0.292) TCGA-EK-A3GK-01 14 67759340 67759340 G A MPP5 Silent p.Q160Q 0.43 TCGA-EK-A3GK-01 14 73969681 73969681 C T HEATR4 Missense_Mutation p.D675N 0.40 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 14 75573250 75573250 G A NEK9 Silent p.L495L 0.30 TCGA-EK-A3GK-01 14 75935999 75935999 G A JDP2 Missense_Mutation p.E116K 0.39 deleterious(0) probably_damaging(0.997) TCGA-EK-A3GK-01 14 77492702 77492702 G A IRF2BPL Silent p.L478L 0.30 TCGA-EK-A3GK-01 14 77893965 77893965 C T VIPAS39 Silent p.K492K 0.24 TCGA-EK-A3GK-01 14 81659136 81659136 G A GTF2A1 Silent p.I220I 0.42 TCGA-EK-A3GK-01 14 81670289 81670289 G A GTF2A1 Nonsense_Mutation p.Q98* 0.40 TCGA-EK-A3GK-01 14 86092301 86092301 C T FLRT2 3'UTR 0.15 TCGA-EK-A3GK-01 14 89041159 89041159 C A ZC3H14 Silent p.I328I 0.45 TCGA-EK-A3GK-01 14 91413850 91413850 C G RPS6KA5 Missense_Mutation p.E147Q 0.44 tolerated(0.39) probably_damaging(0.929) TCGA-EK-A3GK-01 14 91928486 91928486 C G SMEK1 Missense_Mutation p.E678Q 0.42 deleterious(0.04) probably_damaging(0.979) TCGA-EK-A3GK-01 14 92083997 92083997 C G CATSPERB Missense_Mutation p.D782H 0.27 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 14 92471742 92471742 C G TRIP11 Missense_Mutation p.E860Q 0.32 deleterious(0) probably_damaging(0.982) TCGA-EK-A3GK-01 14 92474016 92474016 C G TRIP11 Missense_Mutation p.E499Q 0.50 deleterious(0) probably_damaging(0.987) TCGA-EK-A3GK-01 14 92505916 92505916 C A TRIP11 Silent p.L38L 0.42 TCGA-EK-A3GK-01 14 92608640 92608640 C T CPSF2 Missense_Mutation p.S265L 0.54 deleterious(0.01) possibly_damaging(0.72) TCGA-EK-A3GK-01 14 93397861 93397861 C T CHGA Nonsense_Mutation p.Q208* 0.52 TCGA-EK-A3GK-01 14 94962936 94962936 C G SERPINA12 Missense_Mutation p.D227H 0.20 deleterious(0.02) probably_damaging(0.985) TCGA-EK-A3GK-01 14 95107197 95107197 G A SERPINA13P RNA 0.38 TCGA-EK-A3GK-01 14 96864457 96864457 G A AK7 Missense_Mutation p.E51K 0.29 tolerated(0.05) possibly_damaging(0.611) TCGA-EK-A3GK-01 14 97022632 97022632 C T PAPOLA Missense_Mutation p.S629L 0.26 tolerated(0.22) benign(0.307) TCGA-EK-A3GK-01 15 101110081 101110081 C G LINS Missense_Mutation p.D546H 0.41 deleterious(0) probably_damaging(0.98) TCGA-EK-A3GK-01 15 22709126 22709126 G C AC116165.1 5'Flank 0.33 TCGA-EK-A3GK-01 15 22743378 22743378 G A GOLGA6L1 Missense_Mutation p.R588Q 0.15 unknown(0) TCGA-EK-A3GK-01 15 23014466 23014466 G C NIPA2 Missense_Mutation p.P87A 0.33 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 15 23326292 23326292 C G HERC2P2 RNA 0.16 TCGA-EK-A3GK-01 15 25463777 25463777 G C SNORD115-27 5'Flank 0.36 TCGA-EK-A3GK-01 15 29090373 29090373 C T GOLGA6L7P Intron 0.33 TCGA-EK-A3GK-01 15 29561448 29561448 G A NDNL2 Silent p.L154L 0.31 TCGA-EK-A3GK-01 15 31664947 31664947 G C KLF13 3'UTR 0.26 TCGA-EK-A3GK-01 15 40591117 40591117 G A PLCB2 Silent p.F244F 0.41 TCGA-EK-A3GK-01 15 40591367 40591367 G C PLCB2 Silent p.L215L 0.39 TCGA-EK-A3GK-01 15 40865974 40865974 C G RPUSD2 Silent p.L384L 0.13 TCGA-EK-A3GK-01 15 41020937 41020937 G A RAD51 Missense_Mutation p.D188N 0.36 tolerated(0.15) benign(0.097) TCGA-EK-A3GK-01 15 41346164 41346164 C G INO80 Missense_Mutation p.R746T 0.40 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 15 42171994 42171994 C T SPTBN5 Silent p.L960L 0.42 TCGA-EK-A3GK-01 15 42729566 42729566 G C ZNF106 Nonsense_Mutation p.S1514* 0.39 TCGA-EK-A3GK-01 15 42834734 42834734 C T LRRC57 3'UTR 0.64 TCGA-EK-A3GK-01 15 43329982 43329982 G C UBR1 Missense_Mutation p.L671V 0.61 deleterious(0) possibly_damaging(0.753) TCGA-EK-A3GK-01 15 43641280 43641280 C G ADAL Intron 0.78 TCGA-EK-A3GK-01 15 43662089 43662089 C G ZSCAN29 Missense_Mutation p.R8T 0.37 deleterious(0.02) benign(0.403) TCGA-EK-A3GK-01 15 43825695 43825695 G A PPIP5K1 3'UTR 0.29 TCGA-EK-A3GK-01 15 44105255 44105255 C T MFAP1 Missense_Mutation p.E273K 0.46 deleterious(0) possibly_damaging(0.673) TCGA-EK-A3GK-01 15 44719642 44719642 T A CTDSPL2 5'UTR 0.34 TCGA-EK-A3GK-01 15 44719643 44719643 C T CTDSPL2 5'UTR 0.34 TCGA-EK-A3GK-01 15 44855359 44855359 G A SPG11 Missense_Mutation p.P2431L 0.33 deleterious(0) probably_damaging(0.958) TCGA-EK-A3GK-01 15 44881468 44881468 C T SPG11 Missense_Mutation p.E1630K 0.27 deleterious(0.02) probably_damaging(0.953) TCGA-EK-A3GK-01 15 44941199 44941199 G C SPG11 Silent p.L489L 0.24 TCGA-EK-A3GK-01 15 45433184 45433184 G A DUOX1 Missense_Mutation p.G494E 0.24 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 15 48052058 48052058 C T SEMA6D Silent p.V21V 0.33 TCGA-EK-A3GK-01 15 50751336 50751336 G C USP8 Missense_Mutation p.D159H 0.58 deleterious(0.04) probably_damaging(0.996) TCGA-EK-A3GK-01 15 51768828 51768828 C T DMXL2 Missense_Mutation p.E2308K 0.29 deleterious(0) possibly_damaging(0.482) TCGA-EK-A3GK-01 15 52155081 52155081 C T TMOD3 5'UTR 0.50 TCGA-EK-A3GK-01 15 53994468 53994468 C A WDR72 Missense_Mutation p.D478Y 0.42 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 15 55489063 55489063 C G RSL24D1 Missense_Mutation p.C9S 0.48 deleterious(0) possibly_damaging(0.661) TCGA-EK-A3GK-01 15 59499088 59499088 C T LDHAL6B 5'UTR 0.53 TCGA-EK-A3GK-01 15 62253889 62253889 G C VPS13C Missense_Mutation p.I1269M 0.30 deleterious(0.03) benign(0.141) TCGA-EK-A3GK-01 15 63850361 63850361 C T USP3 Silent p.F169F 0.43 TCGA-EK-A3GK-01 15 63900958 63900958 C T HERC1 3'UTR 0.21 TCGA-EK-A3GK-01 15 64448836 64448836 G A SNX22 3'UTR 0.48 TCGA-EK-A3GK-01 15 64448837 64448837 G A SNX22 3'UTR 0.47 TCGA-EK-A3GK-01 15 65621808 65621808 C T IGDCC3 Missense_Mutation p.E709K 0.47 tolerated_low_confidence(0.34) benign(0.002) TCGA-EK-A3GK-01 15 66187822 66187822 C A MEGF11 3'UTR 0.47 TCGA-EK-A3GK-01 15 67692531 67692531 G A IQCH Missense_Mutation p.R662Q 0.31 deleterious(0.01) benign(0.003) TCGA-EK-A3GK-01 15 68582020 68582020 C A FEM1B Silent p.V108V 0.24 TCGA-EK-A3GK-01 15 68582788 68582788 C G FEM1B Missense_Mutation p.I364M 0.36 tolerated(0.15) possibly_damaging(0.459) TCGA-EK-A3GK-01 15 69238687 69238687 G A SPESP1 Missense_Mutation p.E272K 0.33 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 15 72252262 72252262 C T MYO9A Missense_Mutation p.R721K 0.29 tolerated(0.12) benign(0.241) TCGA-EK-A3GK-01 15 72521976 72521976 G A PKM Intron 0.29 TCGA-EK-A3GK-01 15 73043981 73043981 C T ADPGK 3'UTR 0.39 TCGA-EK-A3GK-01 15 74468908 74468908 G C ISLR 3'UTR 0.32 TCGA-EK-A3GK-01 15 74623334 74623334 G C CCDC33 Missense_Mutation p.E520Q 0.31 deleterious(0) probably_damaging(0.969) TCGA-EK-A3GK-01 15 75693150 75693150 C T SIN3A Missense_Mutation p.R553Q 0.30 deleterious(0) possibly_damaging(0.784) TCGA-EK-A3GK-01 15 75970197 75970197 C T CSPG4 Missense_Mutation p.E1661K 0.34 tolerated(0.1) benign(0.002) TCGA-EK-A3GK-01 15 78386532 78386532 C T SH2D7 Silent p.I85I 0.41 TCGA-EK-A3GK-01 15 79761550 79761550 C G KIAA1024 3'UTR 0.40 TCGA-EK-A3GK-01 15 79761911 79761911 C G KIAA1024 3'UTR 0.50 TCGA-EK-A3GK-01 15 80988091 80988091 C G ABHD17C Silent p.V107V 0.47 TCGA-EK-A3GK-01 15 81585185 81585185 C T IL16 Missense_Mutation p.P570L 0.24 tolerated(0.3) benign(0.007) TCGA-EK-A3GK-01 15 81665068 81665068 C T TMC3 Missense_Mutation p.D34N 0.25 deleterious(0.02) possibly_damaging(0.848) TCGA-EK-A3GK-01 15 83226522 83226522 G C CPEB1 Silent p.L198L 0.27 TCGA-EK-A3GK-01 15 84581944 84581944 G A ADAMTSL3 Missense_Mutation p.E601K 0.35 tolerated(0.16) possibly_damaging(0.861) TCGA-EK-A3GK-01 15 84651086 84651086 G C ADAMTSL3 Missense_Mutation p.Q902H 0.23 tolerated(0.72) benign(0.004) TCGA-EK-A3GK-01 15 88521391 88521391 G A NTRK3 Intron 0.17 TCGA-EK-A3GK-01 15 89694980 89694980 G A ABHD2 Silent p.V89V 0.39 TCGA-EK-A3GK-01 15 90167565 90167565 G A TICRR Missense_Mutation p.E1342K 0.40 tolerated(0.22) benign(0.297) TCGA-EK-A3GK-01 15 90173618 90173618 G A KIF7 Missense_Mutation p.S1073L 0.50 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 15 90799019 90799019 C G TTLL13 Missense_Mutation p.I150M 0.48 deleterious(0) possibly_damaging(0.897) TCGA-EK-A3GK-01 15 98981617 98981617 G A FAM169B 3'UTR 0.45 TCGA-EK-A3GK-01 15 99472812 99472812 G A IGF1R Silent p.L936L 0.30 TCGA-EK-A3GK-01 16 12571627 12571627 G A SNX29 Missense_Mutation p.E697K 0.15 deleterious(0.03) possibly_damaging(0.577) TCGA-EK-A3GK-01 16 1384720 1384720 A G BAIAP3 Missense_Mutation p.T20A 0.42 deleterious_low_confidence(0) benign(0.004) TCGA-EK-A3GK-01 16 1555439 1555439 C G TELO2 Missense_Mutation p.S624C 0.24 deleterious(0) probably_damaging(0.962) TCGA-EK-A3GK-01 16 1555520 1555520 C G TELO2 Missense_Mutation p.S651C 0.26 tolerated(0.06) benign(0.005) TCGA-EK-A3GK-01 16 15675126 15675126 G T C16orf45 Missense_Mutation p.K119N 0.26 tolerated(0.06) possibly_damaging(0.505) TCGA-EK-A3GK-01 16 16149963 16149963 G T ABCC1 Missense_Mutation p.K496N 0.53 deleterious(0.03) possibly_damaging(0.697) TCGA-EK-A3GK-01 16 1703113 1703113 C T CRAMP1L Silent p.H331H 0.38 TCGA-EK-A3GK-01 16 1797130 1797130 C T MAPK8IP3 Missense_Mutation p.S282L 0.21 deleterious(0.04) benign(0.047) TCGA-EK-A3GK-01 16 19073849 19073849 G C TMC7 3'UTR 0.38 TCGA-EK-A3GK-01 16 19132882 19132882 G C ITPRIPL2 3'UTR 0.13 TCGA-EK-A3GK-01 16 19725832 19725832 C A KNOP1 Nonsense_Mutation p.E176* 0.39 TCGA-EK-A3GK-01 16 2018792 2018792 G A RNF151 Missense_Mutation p.E202K 0.37 tolerated(0.92) benign(0.021) TCGA-EK-A3GK-01 16 20334257 20334257 C T GP2 Missense_Mutation p.E197K 0.19 deleterious(0.04) benign(0.03) TCGA-EK-A3GK-01 16 21270155 21270155 C T CRYM Missense_Mutation p.E298K 0.56 deleterious(0) probably_damaging(0.989) TCGA-EK-A3GK-01 16 21416144 21416144 C T NPIPB3 Silent p.E188E 0.21 TCGA-EK-A3GK-01 16 2142996 2142996 G A PKD1 Silent p.I3705I 0.35 TCGA-EK-A3GK-01 16 2152439 2152439 G A PKD1 Silent p.L3048L 0.27 TCGA-EK-A3GK-01 16 21721391 21721391 C A OTOA Silent p.I429I 0.42 TCGA-EK-A3GK-01 16 21974083 21974083 G A UQCRC2 Missense_Mutation p.D131N 0.30 tolerated(0.06) benign(0.005) TCGA-EK-A3GK-01 16 22337179 22337179 G A POLR3E Silent p.R482R 0.39 TCGA-EK-A3GK-01 16 22337467 22337467 G A POLR3E Silent p.L578L 0.51 TCGA-EK-A3GK-01 16 22927371 22927371 G C HS3ST2 3'UTR 0.40 TCGA-EK-A3GK-01 16 23197694 23197694 C G SCNN1G Silent p.L34L 0.43 TCGA-EK-A3GK-01 16 23226541 23226541 G A SCNN1G Silent p.Q567Q 0.33 TCGA-EK-A3GK-01 16 24800641 24800641 G A TNRC6A Silent p.K226K 0.39 TCGA-EK-A3GK-01 16 24946846 24946846 G C ARHGAP17 Silent p.L613L 0.08 TCGA-EK-A3GK-01 16 25266673 25266673 C G ZKSCAN2 Missense_Mutation p.G147A 0.29 tolerated(0.19) benign(0.411) TCGA-EK-A3GK-01 16 27475971 27475971 C T GTF3C1 Missense_Mutation p.E1848K 0.37 tolerated(0.5) benign(0.417) TCGA-EK-A3GK-01 16 27692802 27692802 G C KIAA0556 Silent p.L297L 0.08 TCGA-EK-A3GK-01 16 2812793 2812793 C A SRRM2 Missense_Mutation p.S755Y 0.40 benign(0.184) TCGA-EK-A3GK-01 16 2813042 2813042 C T SRRM2 Missense_Mutation p.S838L 0.41 unknown(0) TCGA-EK-A3GK-01 16 2813050 2813050 C T SRRM2 Missense_Mutation p.H841Y 0.46 unknown(0) TCGA-EK-A3GK-01 16 2821965 2821965 G C TCEB2 Intron 0.44 TCGA-EK-A3GK-01 16 28508263 28508263 G C APOBR Missense_Mutation p.R634T 0.43 tolerated(0.26) benign(0.402) TCGA-EK-A3GK-01 16 28602988 28602988 G A CCDC101 Silent p.Q281Q 0.39 TCGA-EK-A3GK-01 16 28878683 28878683 C G SH2B1 Missense_Mutation p.S324C 0.37 tolerated(0.06) benign(0.324) TCGA-EK-A3GK-01 16 29993184 29993184 G C TAOK2 Missense_Mutation p.E252Q 0.44 tolerated(0.09) benign(0.053) TCGA-EK-A3GK-01 16 29994587 29994587 G C TAOK2 Missense_Mutation p.E398D 0.55 tolerated_low_confidence(0.07) benign(0.217) TCGA-EK-A3GK-01 16 30208755 30208755 C T SLX1A Intron 0.19 TCGA-EK-A3GK-01 16 30681426 30681426 C T FBRS 3'UTR 0.25 TCGA-EK-A3GK-01 16 30751415 30751415 G C SRCAP 3'UTR 0.25 TCGA-EK-A3GK-01 16 310063 310063 G C ITFG3 Missense_Mutation p.E161Q 0.54 tolerated(0.44) benign(0.026) TCGA-EK-A3GK-01 16 31092656 31092656 G A ZNF646 Missense_Mutation p.E1671K 0.43 tolerated(0.69) benign(0.114) TCGA-EK-A3GK-01 16 31098175 31098175 G A RP11-196G11.1 3'Flank 0.43 TCGA-EK-A3GK-01 16 3165888 3165888 G C ZNF205 Missense_Mutation p.Q110H 0.46 tolerated(0.08) possibly_damaging(0.838) TCGA-EK-A3GK-01 16 31926081 31926081 C T ZNF267 Missense_Mutation p.H171Y 0.32 tolerated(1) benign(0.159) TCGA-EK-A3GK-01 16 31926596 31926596 C T ZNF267 Silent p.I342I 0.38 TCGA-EK-A3GK-01 16 3349537 3349537 C T TIGD7 Missense_Mutation p.E360K 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-EK-A3GK-01 16 3656621 3656621 G A SLX4 Missense_Mutation p.T205I 0.12 deleterious(0.04) possibly_damaging(0.677) TCGA-EK-A3GK-01 16 3817784 3817784 C A CREBBP Nonsense_Mutation p.E1063* 0.30 TCGA-EK-A3GK-01 16 3817799 3817799 C A CREBBP Nonsense_Mutation p.E1058* 0.31 TCGA-EK-A3GK-01 16 424225 424225 G A TMEM8A Missense_Mutation p.S584F 0.33 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 16 4786568 4786568 C T C16orf71 Missense_Mutation p.S18F 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-EK-A3GK-01 16 48180487 48180487 G A ABCC12 5'UTR 0.60 TCGA-EK-A3GK-01 16 4833501 4833501 C A SEPT12 Nonsense_Mutation p.E230* 0.27 TCGA-EK-A3GK-01 16 49670174 49670174 G C ZNF423 Missense_Mutation p.I963M 0.14 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 16 52498040 52498040 G A TOX3 Missense_Mutation p.P72S 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-EK-A3GK-01 16 57059957 57059957 G C NLRC5 Missense_Mutation p.D368H 0.28 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 16 57068134 57068134 C T NLRC5 Silent p.L866L 0.46 TCGA-EK-A3GK-01 16 57115066 57115066 C T NLRC5 Missense_Mutation p.P1793L 0.06 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 16 57546435 57546435 C T CCDC102A 3'UTR 0.29 TCGA-EK-A3GK-01 16 57697535 57697535 G A GPR56 3'UTR 0.46 TCGA-EK-A3GK-01 16 57973451 57973451 C G CNGB1 Missense_Mutation p.E419Q 0.10 tolerated(0.35) benign(0.069) TCGA-EK-A3GK-01 16 58031526 58031526 G A ZNF319 Missense_Mutation p.S215L 0.07 deleterious(0) possibly_damaging(0.579) TCGA-EK-A3GK-01 16 58546725 58546725 C T NDRG4 3'UTR 0.31 TCGA-EK-A3GK-01 16 67181321 67181321 G T C16orf70 3'UTR 0.36 TCGA-EK-A3GK-01 16 67181409 67181409 G A C16orf70 3'UTR 0.36 TCGA-EK-A3GK-01 16 67181522 67181522 G A C16orf70 3'UTR 0.22 TCGA-EK-A3GK-01 16 67272280 67272280 C T FHOD1 Intron 0.31 TCGA-EK-A3GK-01 16 67410677 67410677 C T LRRC36 Nonsense_Mutation p.Q570* 0.41 TCGA-EK-A3GK-01 16 67805964 67805964 G C RANBP10 Missense_Mutation p.Q125E 0.52 tolerated(0.06) benign(0.192) TCGA-EK-A3GK-01 16 69373456 69373456 C A COG8 5'UTR 0.51 TCGA-EK-A3GK-01 16 70363314 70363314 G A DDX19B Missense_Mutation p.E243K 0.31 deleterious(0) possibly_damaging(0.883) TCGA-EK-A3GK-01 16 705701 705701 C T WDR90 Missense_Mutation p.S616L 0.41 tolerated(0.09) benign(0.001) TCGA-EK-A3GK-01 16 70778474 70778474 C T VAC14 Silent p.L460L 0.45 TCGA-EK-A3GK-01 16 71004492 71004492 C T HYDIN Silent p.K1850K 0.38 TCGA-EK-A3GK-01 16 72992795 72992795 G A ZFHX3 Missense_Mutation p.S417L 0.48 benign(0.354) TCGA-EK-A3GK-01 16 74919569 74919569 C T WDR59 Missense_Mutation p.D891N 0.39 tolerated(0.08) benign(0.147) TCGA-EK-A3GK-01 16 81479049 81479049 C T CMIP Missense_Mutation p.P68L 0.24 deleterious(0.02) benign(0.054) TCGA-EK-A3GK-01 16 84690989 84690989 G C KLHL36 Missense_Mutation p.K192N 0.15 deleterious(0.01) probably_damaging(1) TCGA-EK-A3GK-01 16 84940291 84940291 C T CRISPLD2 3'UTR 0.41 TCGA-EK-A3GK-01 16 85106603 85106603 G C KIAA0513 Missense_Mutation p.E168Q 0.31 deleterious(0.01) probably_damaging(0.932) TCGA-EK-A3GK-01 16 85743872 85743872 C T C16orf74 Missense_Mutation p.E24K 0.29 tolerated_low_confidence(0.08) possibly_damaging(0.491) TCGA-EK-A3GK-01 16 86614861 86614861 G A FOXL1 3'UTR 0.38 TCGA-EK-A3GK-01 16 87871544 87871544 G C SLC7A5 Silent p.L349L 0.07 TCGA-EK-A3GK-01 16 89849303 89849303 G C FANCA Silent p.L530L 0.43 TCGA-EK-A3GK-01 16 90046647 90046647 C T AFG3L1P Intron 0.51 TCGA-EK-A3GK-01 17 10213051 10213054 CATC ATT MYH13 Frame_Shift_Del p.D1584Nfs*7 0.25 TCGA-EK-A3GK-01 17 10398307 10398307 C T MYH1 Missense_Mutation p.E1803K 0.43 deleterious(0) possibly_damaging(0.816) TCGA-EK-A3GK-01 17 10430338 10430338 G A MYH2 Silent p.L1303L 0.39 TCGA-EK-A3GK-01 17 10728932 10728932 C G PIRT Missense_Mutation p.E11Q 0.51 tolerated_low_confidence(0.12) possibly_damaging(0.691) TCGA-EK-A3GK-01 17 12656108 12656108 G A MYOCD Silent p.L501L 0.45 TCGA-EK-A3GK-01 17 15964791 15964791 C G NCOR1 Silent p.V1935V 0.32 TCGA-EK-A3GK-01 17 16706959 16706959 C G CCDC144A 3'UTR 0.17 TCGA-EK-A3GK-01 17 18061908 18061908 C G MYO15A Silent p.L3013L 0.28 TCGA-EK-A3GK-01 17 18539663 18539663 G C TBC1D28 3'UTR 0.45 TCGA-EK-A3GK-01 17 18832268 18832268 G C PRPSAP2 Missense_Mutation p.E317Q 0.37 tolerated(0.13) benign(0.196) TCGA-EK-A3GK-01 17 21318909 21318909 C G KCNJ12 Silent p.L85L 0.09 TCGA-EK-A3GK-01 17 25932457 25932457 C G KSR1 Intron 0.35 TCGA-EK-A3GK-01 17 26574919 26574919 G C CTD-2008P7.8 RNA 0.37 TCGA-EK-A3GK-01 17 26712222 26712222 G C SARM1 Missense_Mutation p.E486Q 0.48 deleterious(0.01) probably_damaging(0.951) TCGA-EK-A3GK-01 17 27017196 27017196 G C SUPT6H Missense_Mutation p.E1147Q 0.41 deleterious(0) possibly_damaging(0.867) TCGA-EK-A3GK-01 17 27182228 27182228 C T ERAL1 Missense_Mutation p.S59L 0.32 deleterious_low_confidence(0.03) benign(0.004) TCGA-EK-A3GK-01 17 27211323 27211323 C G FLOT2 Missense_Mutation p.E48Q 0.12 deleterious(0.02) probably_damaging(0.978) TCGA-EK-A3GK-01 17 28656379 28656379 G T TMIGD1 Missense_Mutation p.S84Y 0.21 deleterious(0.03) probably_damaging(0.976) TCGA-EK-A3GK-01 17 28960193 28960193 C A LRRC37BP1 RNA 0.39 TCGA-EK-A3GK-01 17 29111327 29111327 G A CRLF3 Nonsense_Mutation p.R403* 0.46 TCGA-EK-A3GK-01 17 30348320 30348320 C T LRRC37B Missense_Mutation p.S52F 0.25 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 17 30980882 30980882 G C MYO1D Silent p.L858L 0.43 TCGA-EK-A3GK-01 17 32953295 32953295 C T TMEM132E Silent p.L73L 0.34 TCGA-EK-A3GK-01 17 33267634 33267634 C G CCT6B Missense_Mutation p.D298H 0.58 deleterious(0) probably_damaging(0.997) TCGA-EK-A3GK-01 17 34091109 34091109 G A C17orf50 Missense_Mutation p.E33K 0.44 tolerated(0.14) possibly_damaging(0.801) TCGA-EK-A3GK-01 17 34415880 34415880 C A CCL3 3'UTR 0.41 TCGA-EK-A3GK-01 17 34856777 34856777 C T MYO19 Missense_Mutation p.R757H 0.46 deleterious(0) probably_damaging(0.912) TCGA-EK-A3GK-01 17 34856921 34856921 C T MYO19 Missense_Mutation p.M745I 0.40 deleterious(0.02) benign(0.243) TCGA-EK-A3GK-01 17 35732994 35732994 G A C17orf78 5'UTR 0.19 TCGA-EK-A3GK-01 17 35873397 35873397 G A DUSP14 3'UTR 0.32 TCGA-EK-A3GK-01 17 35879064 35879064 G A SYNRG Silent p.L1308L 0.27 TCGA-EK-A3GK-01 17 36688397 36688397 G A SRCIN1 3'UTR 0.27 TCGA-EK-A3GK-01 17 37188200 37188200 C G CTD-2206N4.2 5'Flank 0.28 TCGA-EK-A3GK-01 17 37883623 37883623 G A ERBB2 Missense_Mutation p.E1079K 0.19 tolerated(0.91) benign(0.04) TCGA-EK-A3GK-01 17 37903306 37903306 C T GRB7 3'UTR 0.21 TCGA-EK-A3GK-01 17 38562849 38562849 G C TOP2A Silent p.V610V 0.21 TCGA-EK-A3GK-01 17 38978671 38978671 G C KRT10 Missense_Mutation p.S56C 0.16 deleterious_low_confidence(0) benign(0.184) TCGA-EK-A3GK-01 17 39333989 39333989 G A KRTAP4-2 3'UTR 0.30 TCGA-EK-A3GK-01 17 39973375 39973375 G A FKBP10 Missense_Mutation p.R104Q 0.22 tolerated(0.8) benign(0.392) TCGA-EK-A3GK-01 17 39988679 39988679 C T NT5C3B Silent p.R93R 0.23 TCGA-EK-A3GK-01 17 40010025 40010025 C T KLHL11 Missense_Mutation p.M698I 0.25 deleterious_low_confidence(0.04) benign(0.003) TCGA-EK-A3GK-01 17 40092735 40092735 C T TTC25 RNA 0.15 TCGA-EK-A3GK-01 17 40673241 40673241 C T ATP6V0A1 3'UTR 0.15 TCGA-EK-A3GK-01 17 40820118 40820118 G C PLEKHH3 3'UTR 0.27 TCGA-EK-A3GK-01 17 40857136 40857136 C T EZH1 Silent p.K635K 0.25 TCGA-EK-A3GK-01 17 40956316 40956316 C T CNTD1 Nonsense_Mutation p.Q107* 0.32 TCGA-EK-A3GK-01 17 41031767 41031767 C G LINC00671 RNA 0.30 TCGA-EK-A3GK-01 17 41143001 41143001 G A RUNDC1 Silent p.Q370Q 0.18 TCGA-EK-A3GK-01 17 41143037 41143037 G T RUNDC1 Silent p.L382L 0.21 TCGA-EK-A3GK-01 17 4120286 4120286 G A ANKFY1 Silent p.L192L 0.54 TCGA-EK-A3GK-01 17 41246005 41246005 C G BRCA1 Missense_Mutation p.E515Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-EK-A3GK-01 17 41584391 41584391 C G DHX8 Missense_Mutation p.I583M 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-EK-A3GK-01 17 41585216 41585216 T C DHX8 Missense_Mutation p.S717P 0.30 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 17 41585217 41585217 C T DHX8 Missense_Mutation p.S717L 0.30 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 17 41888516 41888516 G A MPP3 Missense_Mutation p.S438F 0.17 deleterious(0) probably_damaging(0.971) TCGA-EK-A3GK-01 17 41909483 41909483 G A MPP3 Intron 0.33 TCGA-EK-A3GK-01 17 42426636 42426636 G A GRN Missense_Mutation p.G35E 0.20 tolerated(0.09) benign(0.126) TCGA-EK-A3GK-01 17 42449783 42449783 G A ITGA2B Silent p.F1023F 0.12 TCGA-EK-A3GK-01 17 42477649 42477649 G C GPATCH8 Nonsense_Mutation p.S599* 0.24 TCGA-EK-A3GK-01 17 42478741 42478741 G C GPATCH8 Nonsense_Mutation p.S235* 0.30 TCGA-EK-A3GK-01 17 43226681 43226681 G C HEXIM1 Missense_Mutation p.E42Q 0.41 tolerated_low_confidence(0.07) benign(0.014) TCGA-EK-A3GK-01 17 43350897 43350897 C G MAP3K14 RNA 0.31 TCGA-EK-A3GK-01 17 43472639 43472639 C T ARHGAP27 3'UTR 0.33 TCGA-EK-A3GK-01 17 43474289 43474289 C T ARHGAP27 Silent p.P307P 0.20 TCGA-EK-A3GK-01 17 44107364 44107364 C G KANSL1 3'UTR 0.29 TCGA-EK-A3GK-01 17 45102045 45102045 G A RP11-156P1.3 Intron 0.16 TCGA-EK-A3GK-01 17 45388491 45388491 C T ITGB3 3'UTR 0.32 TCGA-EK-A3GK-01 17 45608819 45608819 C G NPEPPS Missense_Mutation p.F51L 0.30 deleterious(0.01) possibly_damaging(0.786) TCGA-EK-A3GK-01 17 45760484 45760484 A C KPNB1 3'UTR 0.27 TCGA-EK-A3GK-01 17 46138014 46138014 G A NFE2L1 3'UTR 0.33 TCGA-EK-A3GK-01 17 46214610 46214610 C T SKAP1 Silent p.V356V 0.19 TCGA-EK-A3GK-01 17 46655232 46655232 C T HOXB4 Silent p.V150V 0.40 TCGA-EK-A3GK-01 17 47785258 47785258 G A SLC35B1 5'UTR 0.18 TCGA-EK-A3GK-01 17 4804937 4804937 G A C17orf107 3'UTR 0.46 TCGA-EK-A3GK-01 17 48051296 48051296 C T DLX4 Nonsense_Mutation p.Q238* 0.37 TCGA-EK-A3GK-01 17 48227731 48227731 C G PPP1R9B Missense_Mutation p.K48N 0.36 deleterious(0) benign(0.1) TCGA-EK-A3GK-01 17 48676830 48676830 A - CACNA1G Frame_Shift_Del p.S1101Afs*19 0.45 TCGA-EK-A3GK-01 17 5078318 5078318 G T USP6 3'Flank 0.26 TCGA-EK-A3GK-01 17 5290743 5290743 C T NUP88 Missense_Mutation p.E627K 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-EK-A3GK-01 17 53150360 53150360 G A STXBP4 Missense_Mutation p.E371K 0.20 deleterious(0) possibly_damaging(0.896) TCGA-EK-A3GK-01 17 5322971 5322971 C G RPAIN 5'Flank 0.31 TCGA-EK-A3GK-01 17 5424242 5424242 C A NLRP1 Missense_Mutation p.V1292L 0.29 tolerated(0.06) probably_damaging(0.923) TCGA-EK-A3GK-01 17 56295993 56295993 G T MKS1 Missense_Mutation p.Q60K 0.25 tolerated(0.84) benign(0.001) TCGA-EK-A3GK-01 17 56329551 56329551 C T LPO Silent p.P263P 0.26 TCGA-EK-A3GK-01 17 56772384 56772384 G C RAD51C Missense_Mutation p.E80Q 0.08 tolerated(0.56) benign(0.027) TCGA-EK-A3GK-01 17 56809919 56809919 G A RAD51C Intron 0.18 TCGA-EK-A3GK-01 17 57050206 57050206 G C PPM1E Missense_Mutation p.R377T 0.25 deleterious(0) probably_damaging(0.992) TCGA-EK-A3GK-01 17 57685494 57685494 C G DHX40 3'UTR 0.23 TCGA-EK-A3GK-01 17 57851201 57851201 G C VMP1 Missense_Mutation p.E223D 0.22 tolerated(0.69) benign(0.003) TCGA-EK-A3GK-01 17 57917833 57917833 G C VMP1 3'UTR 0.28 TCGA-EK-A3GK-01 17 58603378 58603378 G A APPBP2 5'UTR 0.15 TCGA-EK-A3GK-01 17 60038445 60038445 C T MED13 Missense_Mutation p.E1755K 0.54 tolerated(0.16) probably_damaging(0.982) TCGA-EK-A3GK-01 17 60039092 60039092 C T MED13 Missense_Mutation p.E1705K 0.28 tolerated(0.32) benign(0.025) TCGA-EK-A3GK-01 17 60059745 60059745 C G MED13 Missense_Mutation p.D1207H 0.29 tolerated(0.17) probably_damaging(0.945) TCGA-EK-A3GK-01 17 60059974 60059974 C T MED13 Missense_Mutation p.M1130I 0.33 tolerated(0.16) benign(0.051) TCGA-EK-A3GK-01 17 60060246 60060246 C G MED13 Missense_Mutation p.D1040H 0.49 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 17 60505165 60505165 G A METTL2A Missense_Mutation p.G192E 0.22 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 17 60742246 60742246 G C MRC2 Missense_Mutation p.Q152H 0.21 deleterious(0.04) benign(0.003) TCGA-EK-A3GK-01 17 60751508 60751508 G A MRC2 Missense_Mutation p.E516K 0.27 tolerated(0.14) benign(0.064) TCGA-EK-A3GK-01 17 60770675 60770675 G A MRC2 3'UTR 0.33 TCGA-EK-A3GK-01 17 61498543 61498543 G C TANC2 Missense_Mutation p.D1734H 0.21 deleterious_low_confidence(0.04) benign(0.259) TCGA-EK-A3GK-01 17 61513431 61513431 G T CYB561 Silent p.L95L 0.32 TCGA-EK-A3GK-01 17 61788121 61788121 C T STRADA Missense_Mutation p.E142K 0.28 tolerated(0.18) probably_damaging(0.994) TCGA-EK-A3GK-01 17 61904804 61904804 C T PSMC5 5'UTR 0.29 TCGA-EK-A3GK-01 17 62025267 62025267 C G SCN4A Missense_Mutation p.D1101H 0.33 deleterious(0.01) probably_damaging(1) TCGA-EK-A3GK-01 17 62498149 62498149 C A DDX5 Missense_Mutation p.D399Y 0.21 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 17 62594576 62594576 C G SMURF2 Missense_Mutation p.D42H 0.38 deleterious(0) probably_damaging(0.987) TCGA-EK-A3GK-01 17 64801077 64801077 C G PRKCA 3'UTR 0.29 TCGA-EK-A3GK-01 17 64801544 64801544 C T PRKCA 3'UTR 0.27 TCGA-EK-A3GK-01 17 64801642 64801642 C G PRKCA 3'UTR 0.20 TCGA-EK-A3GK-01 17 65717632 65717632 G A NOL11 Missense_Mutation p.E151K 0.30 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 17 6589534 6589534 C G SLC13A5 Missense_Mutation p.E567Q 0.47 tolerated(0.32) benign(0.104) TCGA-EK-A3GK-01 17 66039098 66039098 G C KPNA2 Missense_Mutation p.D217H 0.21 tolerated(0.05) possibly_damaging(0.495) TCGA-EK-A3GK-01 17 66247275 66247275 G C AMZ2 Missense_Mutation p.R181T 0.32 tolerated(0.07) benign(0.439) TCGA-EK-A3GK-01 17 67302965 67302965 G A ABCA5 Missense_Mutation p.S230L 0.27 deleterious(0.04) probably_damaging(0.946) TCGA-EK-A3GK-01 17 6902050 6902050 G A ALOX12 Missense_Mutation p.E146K 0.61 tolerated(0.32) benign(0.019) TCGA-EK-A3GK-01 17 6940071 6940071 G A SLC16A13 Silent p.T75T 0.34 TCGA-EK-A3GK-01 17 6945690 6945690 C G SLC16A11 Missense_Mutation p.D271H 0.41 tolerated(0.12) probably_damaging(1) TCGA-EK-A3GK-01 17 70645373 70645373 G A SLC39A11 Missense_Mutation p.P243S 0.76 deleterious(0.02) probably_damaging(1) TCGA-EK-A3GK-01 17 7097021 7097021 G C DLG4 Missense_Mutation p.S562W 0.38 tolerated(0.19) probably_damaging(0.964) TCGA-EK-A3GK-01 17 71429875 71429875 C T SDK2 Silent p.Q436Q 0.27 TCGA-EK-A3GK-01 17 7185120 7185120 C G SLC2A4 5'UTR 0.58 TCGA-EK-A3GK-01 17 72350453 72350453 G A KIF19 Missense_Mutation p.A821T 0.43 tolerated(0.39) benign(0.004) TCGA-EK-A3GK-01 17 72691182 72691182 G A CD300LF 3'UTR 0.35 TCGA-EK-A3GK-01 17 73000219 73000219 C G CDR2L 3'UTR 0.34 TCGA-EK-A3GK-01 17 73257931 73257931 C T MRPS7 5'UTR 0.30 TCGA-EK-A3GK-01 17 73482471 73482471 G C KIAA0195 Missense_Mutation p.E125Q 0.29 tolerated(0.09) benign(0.147) TCGA-EK-A3GK-01 17 73560767 73560767 G A LLGL2 Intron 0.16 TCGA-EK-A3GK-01 17 73584731 73584731 C T MYO15B 5'Flank 0.11 TCGA-EK-A3GK-01 17 73820430 73820430 G C UNK Missense_Mutation p.E789Q 0.24 deleterious(0.02) probably_damaging(0.99) TCGA-EK-A3GK-01 17 7407087 7407087 G C POLR2A Missense_Mutation p.E1073Q 0.29 possibly_damaging(0.612) TCGA-EK-A3GK-01 17 74723155 74723155 C - METTL23 5'UTR 0.47 TCGA-EK-A3GK-01 17 74731176 74731176 C T SRSF2 3'UTR 0.30 TCGA-EK-A3GK-01 17 74733038 74733038 C T SRSF2 Missense_Mutation p.E69K 0.20 deleterious(0.05) possibly_damaging(0.876) TCGA-EK-A3GK-01 17 74902154 74902154 C A MGAT5B Silent p.R315R 0.39 TCGA-EK-A3GK-01 17 74902205 74902205 C G MGAT5B Missense_Mutation p.L332V 0.42 tolerated(0.13) possibly_damaging(0.668) TCGA-EK-A3GK-01 17 75213004 75213004 G A SEC14L1 3'Flank 0.36 TCGA-EK-A3GK-01 17 7573977 7573977 G C TP53 Silent p.L350L 0.38 TCGA-EK-A3GK-01 17 76851440 76851440 C A TIMP2 3'UTR 0.33 TCGA-EK-A3GK-01 17 78261737 78261737 C T RNF213 Nonsense_Mutation p.Q129* 0.26 TCGA-EK-A3GK-01 17 78328309 78328309 C T RNF213 Missense_Mutation p.H3599Y 0.31 benign(0.173) TCGA-EK-A3GK-01 17 7917302 7917302 G C GUCY2D Missense_Mutation p.E790Q 0.29 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 17 79410893 79410893 G A RP11-1055B8.7 Silent p.T758T 0.07 TCGA-EK-A3GK-01 17 79418141 79418141 C T RP11-1055B8.7 Intron 0.18 TCGA-EK-A3GK-01 17 79660922 79660922 C T HGS Missense_Mutation p.S288L 0.15 tolerated(0.72) benign(0.003) TCGA-EK-A3GK-01 17 79660949 79660949 C T HGS Missense_Mutation p.S297L 0.20 tolerated(0.31) benign(0) TCGA-EK-A3GK-01 17 80014758 80014758 G C GPS1 Missense_Mutation p.E473Q 0.21 tolerated(0.44) benign(0.172) TCGA-EK-A3GK-01 17 80040794 80040794 C T FASN Silent p.R1921R 0.24 TCGA-EK-A3GK-01 17 80041486 80041486 C T FASN Missense_Mutation p.E1750K 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-EK-A3GK-01 17 80042558 80042558 C G FASN Silent p.V1533V 0.31 TCGA-EK-A3GK-01 17 80043493 80043493 G C FASN Silent p.L1329L 0.17 TCGA-EK-A3GK-01 17 80059623 80059623 G A FASN 5'Flank 0.19 TCGA-EK-A3GK-01 17 8044201 8044201 C G PER1 3'UTR 0.44 TCGA-EK-A3GK-01 17 8046090 8046090 G A PER1 Silent p.L1046L 0.50 TCGA-EK-A3GK-01 17 8050296 8050296 C T PER1 Missense_Mutation p.D552N 0.33 tolerated(0.44) benign(0.348) TCGA-EK-A3GK-01 17 8077884 8077884 C G TMEM107 Missense_Mutation p.E109Q 0.32 tolerated(0.16) probably_damaging(0.988) TCGA-EK-A3GK-01 17 8445559 8445559 C G MYH10 Missense_Mutation p.E491Q 0.40 benign(0.222) TCGA-EK-A3GK-01 17 9613288 9613288 C G USP43 Missense_Mutation p.S676C 0.50 deleterious(0) probably_damaging(0.994) TCGA-EK-A3GK-01 18 11854413 11854413 G A CHMP1B 3'UTR 0.30 TCGA-EK-A3GK-01 18 13666565 13666565 C T FAM210A Missense_Mutation p.E245K 0.38 deleterious(0.02) probably_damaging(0.977) TCGA-EK-A3GK-01 18 14511988 14511988 G A POTEC Missense_Mutation p.S513F 0.34 tolerated_low_confidence(0.07) probably_damaging(0.974) TCGA-EK-A3GK-01 18 14799120 14799120 C T ANKRD30B Missense_Mutation p.L684F 0.32 tolerated(0.21) benign(0.002) TCGA-EK-A3GK-01 18 22056884 22056884 C T HRH4 Silent p.I177I 0.30 TCGA-EK-A3GK-01 18 23901074 23901074 G C TAF4B Silent p.V681V 0.50 TCGA-EK-A3GK-01 18 28710590 28710590 G C DSC1 Missense_Mutation p.L858V 0.29 tolerated(1) benign(0.003) TCGA-EK-A3GK-01 18 29622159 29622159 G T RNF125 Missense_Mutation p.M112I 0.34 tolerated(0.12) benign(0.189) TCGA-EK-A3GK-01 18 29847959 29847959 C T GAREM Missense_Mutation p.E836K 0.56 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 18 32822738 32822738 C T ZNF397 Silent p.L102L 0.44 TCGA-EK-A3GK-01 18 32823228 32823228 C T ZNF397 Missense_Mutation p.S176F 0.29 tolerated(0.07) benign(0.099) TCGA-EK-A3GK-01 18 32825270 32825270 G TT ZNF397 Frame_Shift_Ins p.E201Lfs*16 0.34 TCGA-EK-A3GK-01 18 33795780 33795780 C G MOCOS Missense_Mutation p.S546C 0.52 tolerated(0.06) benign(0.004) TCGA-EK-A3GK-01 18 44559777 44559777 C G TCEB3B Missense_Mutation p.R620T 0.47 tolerated(0.07) probably_damaging(0.976) TCGA-EK-A3GK-01 18 44560325 44560325 C T TCEB3B Silent p.Q437Q 0.43 TCGA-EK-A3GK-01 18 45567016 45567016 C T ZBTB7C Missense_Mutation p.E155K 0.41 tolerated(0.14) possibly_damaging(0.899) TCGA-EK-A3GK-01 18 52265085 52265085 C G DYNAP Silent p.V114V 0.38 TCGA-EK-A3GK-01 18 55103898 55103898 C A ONECUT2 Nonsense_Mutation p.S317* 0.43 TCGA-EK-A3GK-01 18 56024425 56024425 G A NEDD4L Splice_Site p.X570_splice 0.35 TCGA-EK-A3GK-01 18 60645786 60645786 G C PHLPP1 Missense_Mutation p.E1426Q 0.33 tolerated(0.06) possibly_damaging(0.574) TCGA-EK-A3GK-01 18 67344969 67344969 G A DOK6 Splice_Site p.X97_splice 0.40 TCGA-EK-A3GK-01 18 67684778 67684778 G A RTTN Silent p.L2096L 0.41 TCGA-EK-A3GK-01 18 70417642 70417642 C G NETO1 Missense_Mutation p.R399T 0.27 deleterious(0) probably_damaging(0.994) TCGA-EK-A3GK-01 18 71790643 71790643 G A FBXO15 Silent p.F366F 0.19 TCGA-EK-A3GK-01 18 72114012 72114012 G A FAM69C Silent p.L235L 0.26 TCGA-EK-A3GK-01 18 72775637 72775637 C T ZNF407 Missense_Mutation p.S1987L 0.33 deleterious(0) possibly_damaging(0.906) TCGA-EK-A3GK-01 18 74593360 74593360 G T ZNF236 Nonsense_Mutation p.E435* 0.36 TCGA-EK-A3GK-01 18 8638222 8638222 G C RAB12 Missense_Mutation p.E233Q 0.43 deleterious(0.04) benign(0.032) TCGA-EK-A3GK-01 18 8638499 8638499 G A RAB12 3'UTR 0.58 TCGA-EK-A3GK-01 18 8638676 8638676 G A RAB12 3'UTR 0.39 TCGA-EK-A3GK-01 18 9283611 9283611 G A ANKRD12 3'UTR 0.16 TCGA-EK-A3GK-01 18 9886887 9886887 C T TXNDC2 Silent p.S137S 0.22 TCGA-EK-A3GK-01 19 10131965 10131965 G A RDH8 Missense_Mutation p.E211K 0.23 tolerated(0.13) benign(0.267) TCGA-EK-A3GK-01 19 10427849 10427849 G A RAVER1 3'UTR 0.47 TCGA-EK-A3GK-01 19 10597282 10597282 G A KEAP1 3'UTR 0.36 TCGA-EK-A3GK-01 19 1065502 1065502 C T ABCA7 3'UTR 0.41 TCGA-EK-A3GK-01 19 1085771 1085771 G C HMHA1 Missense_Mutation p.Q1075H 0.08 tolerated_low_confidence(0.06) benign(0.435) TCGA-EK-A3GK-01 19 11033076 11033076 G A CARM1 3'UTR 0.41 TCGA-EK-A3GK-01 19 11303634 11303634 C G KANK2 Missense_Mutation p.E374D 0.52 deleterious(0.04) benign(0.019) TCGA-EK-A3GK-01 19 11303837 11303837 G A KANK2 Nonsense_Mutation p.Q307* 0.29 TCGA-EK-A3GK-01 19 11303838 11303838 A G KANK2 Silent p.A306A 0.31 TCGA-EK-A3GK-01 19 12223676 12223676 G C ZNF788 Missense_Mutation p.L438F 0.40 deleterious(0.01) possibly_damaging(0.667) TCGA-EK-A3GK-01 19 12502923 12502923 G A ZNF799 Missense_Mutation p.L97F 0.36 tolerated(0.73) possibly_damaging(0.642) TCGA-EK-A3GK-01 19 12762964 12762964 G A MAN2B1 Intron 0.43 TCGA-EK-A3GK-01 19 12779095 12779095 G A WDR83OS 3'UTR 0.38 TCGA-EK-A3GK-01 19 14270986 14270986 C G LPHN1 Missense_Mutation p.D585H 0.38 deleterious(0) probably_damaging(0.987) TCGA-EK-A3GK-01 19 14517894 14517894 C T CD97 Silent p.I743I 0.41 TCGA-EK-A3GK-01 19 14517903 14517903 C T CD97 Silent p.L746L 0.42 TCGA-EK-A3GK-01 19 14518909 14518909 C T CD97 Silent p.L828L 0.39 TCGA-EK-A3GK-01 19 14710943 14710943 C T CLEC17A Silent p.F281F 0.32 TCGA-EK-A3GK-01 19 1525363 1525363 C T PLK5 5'UTR 0.40 TCGA-EK-A3GK-01 19 1567479 1567479 C G MEX3D Missense_Mutation p.E193D 0.25 deleterious(0.01) probably_damaging(0.922) TCGA-EK-A3GK-01 19 1578486 1578486 C T MBD3 Silent p.L243L 0.43 TCGA-EK-A3GK-01 19 16664393 16664393 C T SLC35E1 3'UTR 0.49 TCGA-EK-A3GK-01 19 16677459 16677459 C G SLC35E1 Missense_Mutation p.D214H 0.33 deleterious(0) probably_damaging(0.997) TCGA-EK-A3GK-01 19 17678321 17678321 C G COLGALT1 Missense_Mutation p.S199C 0.34 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 19 18260492 18260492 G A MAST3 Missense_Mutation p.E1296K 0.46 tolerated_low_confidence(0.21) benign(0.005) TCGA-EK-A3GK-01 19 18271291 18271291 C G PIK3R2 Silent p.L111L 0.39 TCGA-EK-A3GK-01 19 18376082 18376082 G A KIAA1683 Silent p.L756L 0.41 TCGA-EK-A3GK-01 19 18453666 18453666 C G PGPEP1 Intron 0.19 TCGA-EK-A3GK-01 19 18547798 18547798 C T ISYNA1 Missense_Mutation p.D134N 0.50 tolerated(0.07) benign(0.101) TCGA-EK-A3GK-01 19 19638571 19638571 G A NDUFA13 Missense_Mutation p.D103N 0.39 tolerated(0.06) benign(0.013) TCGA-EK-A3GK-01 19 2037936 2037936 C G MKNK2 3'UTR 0.20 TCGA-EK-A3GK-01 19 20607687 20607687 G C ZNF826P RNA 0.28 TCGA-EK-A3GK-01 19 21117813 21117813 G C ZNF85 Missense_Mutation p.W63C 0.35 tolerated(0.09) benign(0.048) TCGA-EK-A3GK-01 19 22941052 22941052 C T ZNF99 Missense_Mutation p.M553I 0.30 tolerated(0.35) benign(0.002) TCGA-EK-A3GK-01 19 2328597 2328597 C T LSM7 5'UTR 0.55 TCGA-EK-A3GK-01 19 23405575 23405575 G A ZNF724P Missense_Mutation p.S491L 0.38 deleterious(0.03) probably_damaging(0.942) TCGA-EK-A3GK-01 19 2716793 2716793 C T DIRAS1 3'UTR 0.55 TCGA-EK-A3GK-01 19 30156659 30156659 G A PLEKHF1 Intron 0.51 TCGA-EK-A3GK-01 19 33202660 33202660 G A NUDT19 Missense_Mutation p.D309N 0.43 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 19 35615117 35615117 G C FXYD3 3'Flank 0.28 TCGA-EK-A3GK-01 19 35992775 35992775 G C DMKN Intron 0.40 TCGA-EK-A3GK-01 19 36220184 36220184 G A KMT2B Missense_Mutation p.R1635Q 0.38 probably_damaging(0.968) TCGA-EK-A3GK-01 19 37005303 37005303 C G ZNF260 Missense_Mutation p.E280Q 0.25 tolerated(0.31) probably_damaging(0.999) TCGA-EK-A3GK-01 19 37239538 37239538 G A ZNF850 Nonsense_Mutation p.Q802* 0.24 TCGA-EK-A3GK-01 19 3784450 3784450 C T MATK Splice_Site p.X46_splice 0.49 TCGA-EK-A3GK-01 19 37904285 37904285 G A ZNF569 Silent p.F425F 0.26 TCGA-EK-A3GK-01 19 38579389 38579389 G C SIPA1L3 Missense_Mutation p.E521D 0.41 tolerated(0.22) benign(0.02) TCGA-EK-A3GK-01 19 38842933 38842933 C G CATSPERG Missense_Mutation p.F286L 0.08 tolerated(0.71) benign(0.294) TCGA-EK-A3GK-01 19 39600755 39600755 C G PAPL Silent p.L438L 0.38 TCGA-EK-A3GK-01 19 39957123 39957123 G C SUPT5H Missense_Mutation p.D294H 0.32 deleterious(0) probably_damaging(0.957) TCGA-EK-A3GK-01 19 40228618 40228618 C T CLC 5'UTR 0.28 TCGA-EK-A3GK-01 19 40698214 40698214 G A MAP3K10 Silent p.E92E 0.43 TCGA-EK-A3GK-01 19 40901211 40901211 G A PRX Silent p.F1016F 0.26 TCGA-EK-A3GK-01 19 40946982 40946982 C G SERTAD3 3'UTR 0.38 TCGA-EK-A3GK-01 19 4217321 4217321 C T ANKRD24 Nonsense_Mutation p.Q722* 0.55 TCGA-EK-A3GK-01 19 42489498 42489498 C T ATP1A3 Silent p.E241E 0.32 TCGA-EK-A3GK-01 19 42794092 42794092 G C CIC Missense_Mutation p.E485Q 0.30 possibly_damaging(0.838) TCGA-EK-A3GK-01 19 43259329 43259329 C T PSG8 Missense_Mutation p.E267K 0.36 tolerated(0.26) benign(0.012) TCGA-EK-A3GK-01 19 43349407 43349407 T A PSG10P RNA 0.38 TCGA-EK-A3GK-01 19 44680547 44680547 C T ZNF226 Missense_Mutation p.L378F 0.36 tolerated(0.32) probably_damaging(1) TCGA-EK-A3GK-01 19 44777594 44777594 G C ZNF233 Missense_Mutation p.D261H 0.48 tolerated(0.18) benign(0.001) TCGA-EK-A3GK-01 19 4516671 4516671 C G PLIN4 Missense_Mutation p.Q57H 0.32 tolerated(0.13) possibly_damaging(0.689) TCGA-EK-A3GK-01 19 45262759 45262759 C G BCL3 Missense_Mutation p.P418A 0.06 tolerated_low_confidence(0.1) unknown(0) TCGA-EK-A3GK-01 19 4538053 4538053 G C LRG1 Missense_Mutation p.Q315E 0.57 tolerated(0.96) benign(0.009) TCGA-EK-A3GK-01 19 45594372 45594372 G C GEMIN7 3'UTR 0.36 TCGA-EK-A3GK-01 19 45683833 45683833 G C BLOC1S3 3'UTR 0.33 TCGA-EK-A3GK-01 19 45998373 45998373 G C RTN2 Nonsense_Mutation p.S20* 0.28 TCGA-EK-A3GK-01 19 46177987 46177987 C G GIPR Missense_Mutation p.S179C 0.38 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 19 46522675 46522675 G A PGLYRP1 Missense_Mutation p.R138W 0.23 deleterious(0) probably_damaging(0.99) TCGA-EK-A3GK-01 19 46733399 46733399 C T IGFL1 Silent p.L20L 0.33 TCGA-EK-A3GK-01 19 47192914 47192914 G A PRKD2 Silent p.F617F 0.40 TCGA-EK-A3GK-01 19 47278773 47278773 G C SLC1A5 Silent p.V540V 0.30 TCGA-EK-A3GK-01 19 47712607 47712607 G A SAE1 3'UTR 0.29 TCGA-EK-A3GK-01 19 4816102 4816102 G A TICAM1 3'UTR 0.36 TCGA-EK-A3GK-01 19 4816833 4816833 G A TICAM1 Silent p.I519I 0.37 TCGA-EK-A3GK-01 19 4817190 4817190 G C TICAM1 Silent p.L400L 0.41 TCGA-EK-A3GK-01 19 4817906 4817906 G C TICAM1 Missense_Mutation p.L162V 0.50 tolerated(0.36) benign(0.01) TCGA-EK-A3GK-01 19 48698922 48698922 G C C19orf68 Missense_Mutation p.R534T 0.13 tolerated_low_confidence(0.05) benign(0.373) TCGA-EK-A3GK-01 19 48845808 48845808 G A TMEM143 Silent p.F318F 0.08 TCGA-EK-A3GK-01 19 49316448 49316448 G C HSD17B14 Missense_Mutation p.P266R 0.31 deleterious_low_confidence(0.01) benign(0.351) TCGA-EK-A3GK-01 19 49481228 49481228 C G GYS1 Missense_Mutation p.D421H 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-EK-A3GK-01 19 49564535 49564535 G A NTF4 3'UTR 0.23 TCGA-EK-A3GK-01 19 49621647 49621647 G A LIN7B 3'UTR 0.44 TCGA-EK-A3GK-01 19 49713601 49713601 C G TRPM4 Silent p.L1089L 0.28 TCGA-EK-A3GK-01 19 498693 498693 G T MADCAM1 Nonsense_Mutation p.E179* 0.29 TCGA-EK-A3GK-01 19 49932991 49932991 C G SLC17A7 3'UTR 0.40 TCGA-EK-A3GK-01 19 50097787 50097787 C A PRR12 Silent p.I92I 0.07 TCGA-EK-A3GK-01 19 50265447 50265447 C G TSKS Silent p.L71L 0.41 TCGA-EK-A3GK-01 19 50394272 50394272 G A IL4I1 Silent p.F265F 0.49 TCGA-EK-A3GK-01 19 50492941 50492941 C T VRK3 Missense_Mutation p.E351K 0.06 deleterious(0) possibly_damaging(0.771) TCGA-EK-A3GK-01 19 51165386 51165386 C G SHANK1 Missense_Mutation p.E2108Q 0.10 unknown(0) TCGA-EK-A3GK-01 19 5134045 5134045 C G KDM4B Missense_Mutation p.I686M 0.42 benign(0.047) TCGA-EK-A3GK-01 19 51462403 51462403 G C KLK6 3'UTR 0.41 TCGA-EK-A3GK-01 19 51671575 51671575 C T CTD-3187F8.14 Intron 0.39 TCGA-EK-A3GK-01 19 51769113 51769113 C T SIGLECL1 Silent p.L129L 0.41 TCGA-EK-A3GK-01 19 51769119 51769119 C T SIGLECL1 Silent p.L131L 0.43 TCGA-EK-A3GK-01 19 52496531 52496531 C G ZNF615 Missense_Mutation p.E611Q 0.38 deleterious(0.04) benign(0.364) TCGA-EK-A3GK-01 19 52497728 52497728 C G ZNF615 Missense_Mutation p.E212Q 0.07 deleterious(0.03) benign(0.011) TCGA-EK-A3GK-01 19 52537254 52537254 G A ZNF432 Nonsense_Mutation p.Q560* 0.36 TCGA-EK-A3GK-01 19 53014312 53014312 G A ZNF578 Missense_Mutation p.M226I 0.32 tolerated(0.96) benign(0.047) TCGA-EK-A3GK-01 19 53754791 53754791 G C ZNF677 Missense_Mutation p.Q5E 0.25 deleterious(0.02) benign(0.091) TCGA-EK-A3GK-01 19 53854421 53854421 G C ZNF845 Missense_Mutation p.E165Q 0.35 tolerated(0.19) possibly_damaging(0.48) TCGA-EK-A3GK-01 19 53885764 53885764 C T ZNF525 3'UTR 0.61 TCGA-EK-A3GK-01 19 53960251 53960251 G A ZNF761 RNA 0.38 TCGA-EK-A3GK-01 19 54234341 54234341 G C MIR518A1 RNA 0.41 TCGA-EK-A3GK-01 19 54297211 54297211 G A NLRP12 3'UTR 0.61 TCGA-EK-A3GK-01 19 54666432 54666432 G A TMC4 Silent p.V498V 0.25 TCGA-EK-A3GK-01 19 55377321 55377321 C T KIR3DL2 Silent p.L354L 0.06 TCGA-EK-A3GK-01 19 55494074 55494074 G A NLRP2 Silent p.T336T 0.31 TCGA-EK-A3GK-01 19 55689700 55689700 G C SYT5 Nonsense_Mutation p.S39* 0.30 TCGA-EK-A3GK-01 19 55743452 55743452 G A PPP6R1 Nonsense_Mutation p.Q706* 0.26 TCGA-EK-A3GK-01 19 55994438 55994438 C A ZNF628 Silent p.I626I 0.44 TCGA-EK-A3GK-01 19 56369819 56369819 G A NLRP4 Missense_Mutation p.E354K 0.34 deleterious(0.01) benign(0.23) TCGA-EK-A3GK-01 19 56369837 56369837 G AA NLRP4 Frame_Shift_Ins p.D360Kfs*19 0.36 TCGA-EK-A3GK-01 19 56369915 56369915 G T NLRP4 Nonsense_Mutation p.E386* 0.24 TCGA-EK-A3GK-01 19 56422086 56422086 C G NLRP13 Missense_Mutation p.D709H 0.33 tolerated(0.24) benign(0.007) TCGA-EK-A3GK-01 19 57134007 57134007 C A ZNF71 Missense_Mutation p.S451Y 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-EK-A3GK-01 19 57724321 57724321 G C ZNF264 Missense_Mutation p.R619T 0.35 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-EK-A3GK-01 19 5784106 5784106 G C CTB-54O9.9 3'UTR 0.59 TCGA-EK-A3GK-01 19 57954952 57954952 C T ZNF749 Missense_Mutation p.H146Y 0.56 tolerated(0.06) benign(0.403) TCGA-EK-A3GK-01 19 58439034 58439034 G C ZNF418 Nonsense_Mutation p.S172* 0.09 TCGA-EK-A3GK-01 19 58806852 58806852 G A ZNF8 Missense_Mutation p.E560K 0.30 tolerated(0.18) probably_damaging(0.994) TCGA-EK-A3GK-01 19 58850041 58850041 G A ZSCAN22 Silent p.K275K 0.42 TCGA-EK-A3GK-01 19 59021320 59021320 C G SLC27A5 Missense_Mutation p.K317N 0.42 tolerated(0.48) benign(0.01) TCGA-EK-A3GK-01 19 59025616 59025616 G C ZBTB45 Silent p.L447L 0.65 TCGA-EK-A3GK-01 19 5928059 5928059 C G RANBP3 Missense_Mutation p.E245Q 0.20 tolerated(0.09) benign(0.142) TCGA-EK-A3GK-01 19 6375622 6375622 G A PSPN Missense_Mutation p.H52Y 0.53 tolerated(1) benign(0.03) TCGA-EK-A3GK-01 19 6380215 6380215 G A GTF2F1 3'UTR 0.39 TCGA-EK-A3GK-01 19 6418014 6418014 G C KHSRP Missense_Mutation p.S319C 0.05 deleterious(0) probably_damaging(0.991) TCGA-EK-A3GK-01 19 6495889 6495889 G C TUBB4A Silent p.L207L 0.43 TCGA-EK-A3GK-01 19 6678219 6678219 C G C3 Missense_Mutation p.E1598D 0.42 tolerated(0.54) benign(0.006) TCGA-EK-A3GK-01 19 7585260 7585260 C T ZNF358 Nonsense_Mutation p.Q378* 0.46 TCGA-EK-A3GK-01 19 808409 808409 G A PTBP1 Silent p.E401E 0.15 TCGA-EK-A3GK-01 19 808419 808419 G C PTBP1 Missense_Mutation p.V405L 0.13 deleterious(0.05) benign(0.065) TCGA-EK-A3GK-01 19 814924 814924 G A LPPR3 Silent p.I187I 0.47 TCGA-EK-A3GK-01 19 8182454 8182454 C T FBN3 Silent p.L1119L 0.64 TCGA-EK-A3GK-01 1 100347192 100347192 C T AGL Silent p.F751F 0.55 TCGA-EK-A3GK-01 1 10195164 10195164 G C UBE4B Missense_Mutation p.R715T 0.27 tolerated(0.26) benign(0.05) TCGA-EK-A3GK-01 1 109779449 109779449 C G SARS Intron 0.26 TCGA-EK-A3GK-01 1 110213924 110213924 G A GSTM2 Missense_Mutation p.E126K 0.44 tolerated(0.12) benign(0.014) TCGA-EK-A3GK-01 1 110774856 110774856 C T KCNC4 Silent p.L611L 0.32 TCGA-EK-A3GK-01 1 11083435 11083435 C T TARDBP 3'UTR 0.55 TCGA-EK-A3GK-01 1 11174420 11174420 C T MTOR Missense_Mutation p.E2419K 0.44 deleterious(0) probably_damaging(0.995) TCGA-EK-A3GK-01 1 111854982 111854982 C G CHIA Missense_Mutation p.L76V 0.53 deleterious(0.02) benign(0.157) TCGA-EK-A3GK-01 1 114165510 114165510 G C MAGI3 Missense_Mutation p.M418I 0.23 deleterious(0.01) possibly_damaging(0.801) TCGA-EK-A3GK-01 1 114255982 114255982 C G PHTF1 Missense_Mutation p.K234N 0.38 tolerated(0.13) possibly_damaging(0.797) TCGA-EK-A3GK-01 1 114429234 114429234 C T BCL2L15 Silent p.R58R 0.52 TCGA-EK-A3GK-01 1 114523274 114523274 C G OLFML3 Intron 0.41 TCGA-EK-A3GK-01 1 114939210 114939210 G C TRIM33 3'UTR 0.46 TCGA-EK-A3GK-01 1 116235911 116235911 G C VANGL1 3'UTR 0.43 TCGA-EK-A3GK-01 1 116379082 116379082 C G NHLH2 3'Flank 0.36 TCGA-EK-A3GK-01 1 116574197 116574197 C A SLC22A15 Missense_Mutation p.F313L 0.27 deleterious(0.05) benign(0.101) TCGA-EK-A3GK-01 1 117509651 117509651 C T PTGFRN Silent p.L586L 0.30 TCGA-EK-A3GK-01 1 117634490 117634490 C G TTF2 Nonsense_Mutation p.S908* 0.39 TCGA-EK-A3GK-01 1 11844289 11844289 C G C1orf167 Missense_Mutation p.Q1046E 0.18 tolerated(0.61) benign(0.092) TCGA-EK-A3GK-01 1 118548123 118548123 C G SPAG17 Missense_Mutation p.E1564Q 0.29 deleterious(0.01) possibly_damaging(0.636) TCGA-EK-A3GK-01 1 119426679 119426679 C G TBX15 3'UTR 0.22 TCGA-EK-A3GK-01 1 11983500 11983500 G A KIAA2013 Silent p.L360L 0.32 TCGA-EK-A3GK-01 1 12091427 12091427 G C MIIP Missense_Mutation p.Q349H 0.44 tolerated(0.19) probably_damaging(0.935) TCGA-EK-A3GK-01 1 12254073 12254073 C T TNFRSF1B Silent p.I283I 0.37 TCGA-EK-A3GK-01 1 12304470 12304470 C A VPS13D Missense_Mutation p.Q115K 0.39 benign(0) TCGA-EK-A3GK-01 1 12337696 12337696 G A VPS13D Missense_Mutation p.E1351K 0.49 benign(0.025) TCGA-EK-A3GK-01 1 12414078 12414078 C A VPS13D Nonsense_Mutation p.S3160* 0.23 TCGA-EK-A3GK-01 1 12885298 12885298 C T PRAMEF11 Silent p.L271L 0.10 TCGA-EK-A3GK-01 1 144911926 144911926 G T PDE4DIP Nonsense_Mutation p.S728* 0.17 TCGA-EK-A3GK-01 1 145116215 145116215 G C SEC22B RNA 0.11 TCGA-EK-A3GK-01 1 145209290 145209290 C T RP11-458D21.5 5'UTR 0.21 TCGA-EK-A3GK-01 1 145209385 145209385 C G RP11-458D21.5 5'UTR 0.32 TCGA-EK-A3GK-01 1 145282497 145282497 G C NOTCH2NL 3'UTR 0.18 TCGA-EK-A3GK-01 1 145304593 145304593 C G NBPF10 Nonsense_Mutation p.S509* 0.12 TCGA-EK-A3GK-01 1 146658596 146658596 G C FMO5 Missense_Mutation p.I495M 0.53 tolerated(0.16) benign(0.363) TCGA-EK-A3GK-01 1 147096044 147096044 G C BCL9 Missense_Mutation p.D1189H 0.48 tolerated(0.09) probably_damaging(0.993) TCGA-EK-A3GK-01 1 147097692 147097692 G C BCL9 3'UTR 0.22 TCGA-EK-A3GK-01 1 148951425 148951425 G A RP11-14N7.2 RNA 0.13 TCGA-EK-A3GK-01 1 149858934 149858934 G A HIST2H2AC 3'UTR 0.26 TCGA-EK-A3GK-01 1 149919220 149919220 C G OTUD7B Missense_Mutation p.E419Q 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-EK-A3GK-01 1 150266492 150266492 C G MRPS21 5'UTR 0.16 TCGA-EK-A3GK-01 1 150705599 150705599 C G CTSS Missense_Mutation p.E307Q 0.21 tolerated(0.78) benign(0.003) TCGA-EK-A3GK-01 1 151220502 151220502 G C PIP5K1A 3'Flank 0.17 TCGA-EK-A3GK-01 1 151234722 151234722 C T PSMD4 Missense_Mutation p.H38Y 0.26 tolerated(0.58) probably_damaging(0.943) TCGA-EK-A3GK-01 1 151536388 151536388 G C TUFT1 Missense_Mutation p.L82F 0.11 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 1 152079809 152079809 C A TCHH 3'UTR 0.15 TCGA-EK-A3GK-01 1 152082912 152082912 C G TCHH Missense_Mutation p.E927D 0.32 unknown(0) TCGA-EK-A3GK-01 1 152084363 152084363 C G TCHH Missense_Mutation p.E444Q 0.06 unknown(0) TCGA-EK-A3GK-01 1 152188560 152188560 C T HRNR Missense_Mutation p.G1849R 0.10 unknown(0) TCGA-EK-A3GK-01 1 153637792 153637792 C T ILF2 Missense_Mutation p.E161K 0.29 tolerated(0.09) benign(0.381) TCGA-EK-A3GK-01 1 153665889 153665889 G A NPR1 Silent p.%3D 0.35 TCGA-EK-A3GK-01 1 153949166 153949166 C T JTB Intron 0.52 TCGA-EK-A3GK-01 1 154031136 154031136 C A NUP210L Nonsense_Mutation p.E962* 0.42 TCGA-EK-A3GK-01 1 154523423 154523423 C T UBE2Q1 Missense_Mutation p.E410K 0.27 tolerated(0.07) benign(0.339) TCGA-EK-A3GK-01 1 154525569 154525569 C T UBE2Q1 Missense_Mutation p.G223E 0.64 tolerated(1) benign(0.001) TCGA-EK-A3GK-01 1 155005216 155005216 G A DCST2 Silent p.A156A 0.19 TCGA-EK-A3GK-01 1 155161913 155161913 G C MUC1 Missense_Mutation p.Q74E 0.53 tolerated(0.72) benign(0.003) TCGA-EK-A3GK-01 1 155644834 155644834 G C YY1AP1 Silent p.L264L 0.48 TCGA-EK-A3GK-01 1 155658092 155658092 C A YY1AP1 Missense_Mutation p.R55L 0.63 deleterious_low_confidence(0) unknown(0) TCGA-EK-A3GK-01 1 155658957 155658957 C A DAP3 5'UTR 0.36 TCGA-EK-A3GK-01 1 155726795 155726795 G C GON4L Nonsense_Mutation p.S1824* 0.17 TCGA-EK-A3GK-01 1 155880451 155880451 C G RIT1 Missense_Mutation p.K51N 0.27 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 1 155988069 155988069 C T SSR2 Silent p.R82R 0.28 TCGA-EK-A3GK-01 1 156721268 156721268 G T HDGF Intron 0.42 TCGA-EK-A3GK-01 1 15701058 15701058 C T FHAD1 Nonsense_Mutation p.Q383* 0.56 TCGA-EK-A3GK-01 1 158449973 158449973 C T OR10R2 Silent p.L102L 0.16 TCGA-EK-A3GK-01 1 158581038 158581038 C T SPTA1 3'UTR 0.24 TCGA-EK-A3GK-01 1 158596788 158596788 C T SPTA1 Missense_Mutation p.E1892K 0.17 tolerated(0.41) possibly_damaging(0.744) TCGA-EK-A3GK-01 1 159505756 159505756 G A OR10J5 Silent p.F14F 0.38 TCGA-EK-A3GK-01 1 160093844 160093844 C A ATP1A2 Missense_Mutation p.Q165K 0.26 deleterious(0.05) benign(0.079) TCGA-EK-A3GK-01 1 160106421 160106421 C G ATP1A2 Missense_Mutation p.F875L 0.27 deleterious(0.02) possibly_damaging(0.556) TCGA-EK-A3GK-01 1 161069237 161069237 G A KLHDC9 Missense_Mutation p.G210E 0.14 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 1 161140694 161140694 C G PPOX Intron 0.16 TCGA-EK-A3GK-01 1 161326588 161326588 C T SDHC Silent p.V121V 0.36 TCGA-EK-A3GK-01 1 161495957 161495957 C T HSPA6 Silent p.I503I 0.36 TCGA-EK-A3GK-01 1 161519637 161519637 C T FCGR3A 5'UTR 0.34 TCGA-EK-A3GK-01 1 16200657 16200657 C G SPEN Intron 0.40 TCGA-EK-A3GK-01 1 16257569 16257569 G T SPEN Missense_Mutation p.D1612Y 0.36 possibly_damaging(0.759) TCGA-EK-A3GK-01 1 16257893 16257893 G C SPEN Missense_Mutation p.E1720Q 0.49 benign(0.007) TCGA-EK-A3GK-01 1 16263929 16263929 C T SPEN Missense_Mutation p.S3433F 0.35 probably_damaging(0.998) TCGA-EK-A3GK-01 1 163044339 163044339 C T RGS4 Nonsense_Mutation p.Q300* 0.58 TCGA-EK-A3GK-01 1 163045932 163045932 G T RGS4 3'UTR 0.54 TCGA-EK-A3GK-01 1 16350317 16350317 G A CLCNKA Silent p.Q41Q 0.44 TCGA-EK-A3GK-01 1 165171506 165171506 G A LMX1A 3'UTR 0.50 TCGA-EK-A3GK-01 1 165171522 165171522 G T LMX1A 3'UTR 0.53 TCGA-EK-A3GK-01 1 165697359 165697359 C T TMCO1 Splice_Site p.X208_splice 0.27 TCGA-EK-A3GK-01 1 165728791 165728791 G A TMCO1 Missense_Mutation p.S111L 0.57 tolerated(0.11) benign(0.118) TCGA-EK-A3GK-01 1 16577630 16577630 G C FBXO42 Missense_Mutation p.I563M 0.18 deleterious_low_confidence(0) benign(0.091) TCGA-EK-A3GK-01 1 168066279 168066279 G A GPR161 Missense_Mutation p.T209M 0.30 deleterious(0) probably_damaging(0.977) TCGA-EK-A3GK-01 1 169433220 169433220 G C SLC19A2 3'UTR 0.55 TCGA-EK-A3GK-01 1 169521893 169521893 C T F5 Missense_Mutation p.E400K 0.15 tolerated(0.45) benign(0.021) TCGA-EK-A3GK-01 1 171244493 171244493 C G FMO1 Silent p.V110V 0.33 TCGA-EK-A3GK-01 1 171673085 171673085 G T VAMP4 3'UTR 0.33 TCGA-EK-A3GK-01 1 173878880 173878880 C T SERPINC1 Silent p.E321E 0.16 TCGA-EK-A3GK-01 1 174951985 174951985 G C RABGAP1L Missense_Mutation p.L223F 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-EK-A3GK-01 1 174987559 174987559 G A MRPS14 Missense_Mutation p.L67F 0.60 tolerated(0.05) benign(0.076) TCGA-EK-A3GK-01 1 176133017 176133017 G C RFWD2 Silent p.L192L 0.22 TCGA-EK-A3GK-01 1 176564181 176564181 C T PAPPA2 Missense_Mutation p.L481F 0.55 tolerated(0.26) benign(0.025) TCGA-EK-A3GK-01 1 178003886 178003886 G C RP11-568K15.1 RNA 0.34 TCGA-EK-A3GK-01 1 179659947 179659947 G C TDRD5 Missense_Mutation p.E993Q 0.63 tolerated(0.22) benign(0.312) TCGA-EK-A3GK-01 1 180081799 180081799 G C CEP350 3'UTR 0.24 TCGA-EK-A3GK-01 1 182798813 182798813 G A NPL 3'UTR 0.47 TCGA-EK-A3GK-01 1 182873370 182873370 C T SHCBP1L Missense_Mutation p.C511Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 1 183938564 183938564 C T COLGALT2 Nonsense_Mutation p.W224* 0.22 TCGA-EK-A3GK-01 1 184677335 184677335 C G EDEM3 Missense_Mutation p.L663F 0.47 tolerated(0.08) benign(0.302) TCGA-EK-A3GK-01 1 186901988 186901988 C T PLA2G4A Silent p.L218L 0.53 TCGA-EK-A3GK-01 1 192780529 192780529 C T RGS2 Intron 0.59 TCGA-EK-A3GK-01 1 196716339 196716339 G A CFH Missense_Mutation p.E1198K 0.21 deleterious(0.05) probably_damaging(0.947) TCGA-EK-A3GK-01 1 200828352 200828352 C G CAMSAP2 3'UTR 0.34 TCGA-EK-A3GK-01 1 200828483 200828483 G C CAMSAP2 3'UTR 0.50 TCGA-EK-A3GK-01 1 201981124 201981124 C T ELF3 Missense_Mutation p.S68L 0.81 deleterious(0) possibly_damaging(0.821) TCGA-EK-A3GK-01 1 201981255 201981255 C T ELF3 Silent p.L112L 0.49 TCGA-EK-A3GK-01 1 203054799 203054799 C T MYOG Silent p.V97V 0.48 TCGA-EK-A3GK-01 1 203055086 203055086 C G MYOG Missense_Mutation p.E2Q 0.44 deleterious(0.01) probably_damaging(0.982) TCGA-EK-A3GK-01 1 203696622 203696622 G C ATP2B4 Missense_Mutation p.E1078Q 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-EK-A3GK-01 1 203770989 203770989 G A ZC3H11A 5'UTR 0.30 TCGA-EK-A3GK-01 1 204188342 204188342 G A PLEKHA6 3'UTR 0.32 TCGA-EK-A3GK-01 1 207237151 207237151 G A PFKFB2 Missense_Mutation p.D162N 0.15 possibly_damaging(0.513) TCGA-EK-A3GK-01 1 20809581 20809581 G A CAMK2N1 3'UTR 0.51 TCGA-EK-A3GK-01 1 20827823 20827823 C T MUL1 Missense_Mutation p.R140Q 0.17 deleterious(0.01) probably_damaging(1) TCGA-EK-A3GK-01 1 210415303 210415303 C T SERTAD4 Missense_Mutation p.S231F 0.18 deleterious_low_confidence(0.02) benign(0.216) TCGA-EK-A3GK-01 1 211599579 211599579 G C LINC00467 RNA 0.53 TCGA-EK-A3GK-01 1 21175959 21175959 C G EIF4G3 Missense_Mutation p.E1229D 0.44 deleterious(0.02) possibly_damaging(0.597) TCGA-EK-A3GK-01 1 216676652 216676652 G C ESRRG 3'UTR 0.55 TCGA-EK-A3GK-01 1 220340971 220340971 G A RAB3GAP2 Silent p.F951F 0.15 TCGA-EK-A3GK-01 1 220440583 220440583 G A RAB3GAP2 Intron 0.11 TCGA-EK-A3GK-01 1 222803319 222803319 G C MIA3 Missense_Mutation p.K919N 0.25 tolerated(0.45) benign(0.05) TCGA-EK-A3GK-01 1 222832991 222832991 G A MIA3 Missense_Mutation p.E1600K 0.32 deleterious(0) benign(0.218) TCGA-EK-A3GK-01 1 223717507 223717507 G A CAPN8 Silent p.L629L 0.24 TCGA-EK-A3GK-01 1 223947151 223947151 C T CAPN2 Silent p.I499I 0.37 TCGA-EK-A3GK-01 1 22419412 22419412 G A CDC42 3'UTR 0.10 TCGA-EK-A3GK-01 1 224495884 224495884 C G NVL Missense_Mutation p.E142Q 0.08 tolerated(0.07) benign(0.014) TCGA-EK-A3GK-01 1 225328694 225328694 C G DNAH14 Missense_Mutation p.I571M 0.46 deleterious(0) probably_damaging(0.942) TCGA-EK-A3GK-01 1 227262018 227262018 G A CDC42BPA Missense_Mutation p.S843F 0.52 deleterious(0) possibly_damaging(0.847) TCGA-EK-A3GK-01 1 228486253 228486253 G A OBSCN Missense_Mutation p.E4349K 0.12 possibly_damaging(0.776) TCGA-EK-A3GK-01 1 231042280 231042280 C T TTC13 3'UTR 0.40 TCGA-EK-A3GK-01 1 231333131 231333131 G C TRIM67 Missense_Mutation p.Q353H 0.14 tolerated(0.11) possibly_damaging(0.669) TCGA-EK-A3GK-01 1 231353726 231353726 C T TRIM67 3'Flank 0.12 TCGA-EK-A3GK-01 1 232600674 232600674 T C SIPA1L2 Missense_Mutation p.K911R 0.43 tolerated(0.06) probably_damaging(0.995) TCGA-EK-A3GK-01 1 232944001 232944001 G C MAP10 3'UTR 0.08 TCGA-EK-A3GK-01 1 235338556 235338556 C G ARID4B Missense_Mutation p.D1203H 0.31 tolerated(0.17) possibly_damaging(0.866) TCGA-EK-A3GK-01 1 236746396 236746396 A T HEATR1 Missense_Mutation p.V781E 0.35 tolerated(0.1) benign(0.04) TCGA-EK-A3GK-01 1 236755358 236755358 C A HEATR1 Missense_Mutation p.D453Y 0.53 deleterious(0.01) possibly_damaging(0.664) TCGA-EK-A3GK-01 1 237780711 237780711 C T RYR2 Silent p.V1947V 0.33 TCGA-EK-A3GK-01 1 240256491 240256491 C T FMN2 Missense_Mutation p.S361F 0.89 benign(0.184) TCGA-EK-A3GK-01 1 2435820 2435820 G T PLCH2 3'UTR 0.45 TCGA-EK-A3GK-01 1 2435841 2435841 C A PLCH2 3'UTR 0.43 TCGA-EK-A3GK-01 1 244756713 244756713 C T C1orf101 Nonsense_Mutation p.Q736* 0.51 TCGA-EK-A3GK-01 1 245765894 245765894 C T KIF26B Missense_Mutation p.R456C 0.13 deleterious(0) unknown(0) TCGA-EK-A3GK-01 1 246890254 246890254 C T SCCPDH Missense_Mutation p.S84L 0.58 deleterious(0) probably_damaging(0.995) TCGA-EK-A3GK-01 1 247163260 247163260 C T ZNF695 Silent p.L40L 0.29 TCGA-EK-A3GK-01 1 247200615 247200615 C G ZNF670 3'UTR 0.30 TCGA-EK-A3GK-01 1 248756599 248756599 G A OR2T10 Silent p.F157F 0.19 TCGA-EK-A3GK-01 1 25715555 25715555 G T RHCE Nonsense_Mutation p.S284* 0.19 TCGA-EK-A3GK-01 1 26606376 26606376 C G SH3BGRL3 5'UTR 0.16 TCGA-EK-A3GK-01 1 27276594 27276594 G C C1orf172 Missense_Mutation p.S388W 0.40 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 1 28148834 28148834 G A STX12 Silent p.T275T 0.52 TCGA-EK-A3GK-01 1 29647330 29647330 C T PTPRU Missense_Mutation p.S1284F 0.30 tolerated(0.44) possibly_damaging(0.903) TCGA-EK-A3GK-01 1 32645868 32645868 G A TXLNA 5'UTR 0.38 TCGA-EK-A3GK-01 1 32645926 32645926 G A TXLNA 5'UTR 0.36 TCGA-EK-A3GK-01 1 32646028 32646028 G A TXLNA Missense_Mutation p.E28K 0.26 tolerated(0.28) benign(0.033) TCGA-EK-A3GK-01 1 32936792 32936792 G C ZBTB8B Silent p.L189L 0.53 TCGA-EK-A3GK-01 1 33979660 33979660 C G CSMD2 3'UTR 0.18 TCGA-EK-A3GK-01 1 34082535 34082535 C T CSMD2 Missense_Mutation p.R1956Q 0.30 deleterious(0.04) probably_damaging(1) TCGA-EK-A3GK-01 1 34174898 34174898 C A CSMD2 Intron 0.33 TCGA-EK-A3GK-01 1 34662969 34662969 G C C1orf94 Missense_Mutation p.R155T 0.11 deleterious(0.01) possibly_damaging(0.545) TCGA-EK-A3GK-01 1 35906603 35906603 G A KIAA0319L Intron 0.36 TCGA-EK-A3GK-01 1 3598993 3598993 C T TP73 Silent p.L22L 0.24 TCGA-EK-A3GK-01 1 36023552 36023552 G A NCDN 5'UTR 0.40 TCGA-EK-A3GK-01 1 3688123 3688123 G C CCDC27 3'UTR 0.50 TCGA-EK-A3GK-01 1 38156031 38156031 G C C1orf109 5'UTR 0.35 TCGA-EK-A3GK-01 1 38397237 38397237 C A INPP5B Intron 0.43 TCGA-EK-A3GK-01 1 39990874 39990874 C A BMP8A Intron 0.07 TCGA-EK-A3GK-01 1 40149662 40149662 C T HPCAL4 Missense_Mutation p.D109N 0.38 deleterious(0) possibly_damaging(0.844) TCGA-EK-A3GK-01 1 40536182 40536182 C G CAP1 Missense_Mutation p.Q400E 0.31 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 1 40557775 40557775 C A PPT1 Missense_Mutation p.D102Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 1 40887752 40887752 C T SMAP2 Silent p.L423L 0.44 TCGA-EK-A3GK-01 1 41949753 41949753 G A EDN2 Silent p.F62F 0.34 TCGA-EK-A3GK-01 1 43212309 43212309 G C LEPRE1 3'UTR 0.45 TCGA-EK-A3GK-01 1 43739105 43739105 G A TMEM125 3'UTR 0.32 TCGA-EK-A3GK-01 1 43828818 43828818 C G CDC20 3'UTR 0.07 TCGA-EK-A3GK-01 1 45292359 45292359 G A PTCH2 Missense_Mutation p.A926V 0.32 tolerated(0.33) benign(0.013) TCGA-EK-A3GK-01 1 45469601 45469601 C T HECTD3 Silent p.R785R 0.23 TCGA-EK-A3GK-01 1 45469798 45469798 C G HECTD3 Missense_Mutation p.E761Q 0.19 tolerated(0.07) possibly_damaging(0.588) TCGA-EK-A3GK-01 1 45469950 45469950 C G HECTD3 Missense_Mutation p.E748Q 0.24 deleterious(0.02) probably_damaging(0.925) TCGA-EK-A3GK-01 1 45470392 45470392 C T HECTD3 Silent p.L674L 0.26 TCGA-EK-A3GK-01 1 45470457 45470457 C G HECTD3 Missense_Mutation p.E653Q 0.22 deleterious(0.01) possibly_damaging(0.734) TCGA-EK-A3GK-01 1 47609027 47609027 G C CYP4A22 Missense_Mutation p.K199N 0.46 deleterious(0.01) probably_damaging(0.97) TCGA-EK-A3GK-01 1 47610227 47610227 G A CYP4A22 Silent p.E301E 0.22 TCGA-EK-A3GK-01 1 51774962 51774962 G C TTC39A Missense_Mutation p.I157M 0.24 tolerated(0.36) benign(0.183) TCGA-EK-A3GK-01 1 53728200 53728200 C G LRP8 Missense_Mutation p.K564N 0.40 deleterious(0) probably_damaging(0.986) TCGA-EK-A3GK-01 1 54474644 54474644 G C LDLRAD1 3'UTR 0.54 TCGA-EK-A3GK-01 1 6158423 6158423 G A KCNAB2 Intron 0.27 TCGA-EK-A3GK-01 1 62329999 62329999 G C INADL Missense_Mutation p.E843D 0.36 tolerated(0.52) benign(0.012) TCGA-EK-A3GK-01 1 62677114 62677114 G A L1TD1 3'UTR 0.50 TCGA-EK-A3GK-01 1 62739081 62739081 C T KANK4 Silent p.K565K 0.27 TCGA-EK-A3GK-01 1 63790613 63790613 G T FOXD3 3'UTR 0.28 TCGA-EK-A3GK-01 1 6635002 6635002 C G TAS1R1 Silent p.V270V 0.19 TCGA-EK-A3GK-01 1 68512439 68512439 G A DIRAS3 Missense_Mutation p.S181L 0.35 deleterious(0.01) probably_damaging(0.951) TCGA-EK-A3GK-01 1 74670707 74670707 G C FPGT Missense_Mutation p.E326Q 0.44 tolerated(0.12) probably_damaging(0.94) TCGA-EK-A3GK-01 1 75608863 75608863 G C LHX8 Silent p.R150R 0.30 TCGA-EK-A3GK-01 1 86591470 86591470 C G COL24A1 Missense_Mutation p.K183N 0.44 tolerated(0.08) benign(0.028) TCGA-EK-A3GK-01 1 8716253 8716253 G C RERE Nonsense_Mutation p.S35* 0.39 TCGA-EK-A3GK-01 1 87185229 87185229 G C SH3GLB1 Missense_Mutation p.R85T 0.29 deleterious(0.02) possibly_damaging(0.772) TCGA-EK-A3GK-01 1 90058471 90058471 G A LRRC8B Missense_Mutation p.E761K 0.29 tolerated(0.09) probably_damaging(0.989) TCGA-EK-A3GK-01 1 91851329 91851329 G A HFM1 Missense_Mutation p.S186F 0.54 tolerated_low_confidence(0.15) benign(0.002) TCGA-EK-A3GK-01 1 92441964 92441964 C T BRDT Missense_Mutation p.S196L 0.29 tolerated(0.53) benign(0.002) TCGA-EK-A3GK-01 1 97547945 97547945 C T DPYD Missense_Mutation p.E950K 0.35 tolerated(0.11) benign(0.08) TCGA-EK-A3GK-01 1 9791276 9791276 G A CLSTN1 Silent p.V912V 0.39 TCGA-EK-A3GK-01 20 1287797 1287797 G A SNPH 3'UTR 0.45 TCGA-EK-A3GK-01 20 18505236 18505236 C T SEC23B Missense_Mutation p.H176Y 0.32 tolerated(0.09) possibly_damaging(0.708) TCGA-EK-A3GK-01 20 25460854 25460854 C G NINL Silent p.L620L 0.23 TCGA-EK-A3GK-01 20 25596592 25596592 C G NANP Missense_Mutation p.S239T 0.30 tolerated(0.29) benign(0.001) TCGA-EK-A3GK-01 20 2560636 2560636 C T TMC2 Silent p.L256L 0.45 TCGA-EK-A3GK-01 20 30532973 30532973 C A PDRG1 3'UTR 0.40 TCGA-EK-A3GK-01 20 30533645 30533645 C T PDRG1 Missense_Mutation p.E123K 0.35 deleterious(0) probably_damaging(0.989) TCGA-EK-A3GK-01 20 30585132 30585132 C G XKR7 Missense_Mutation p.H538D 0.19 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 20 31571708 31571708 G T SUN5 Missense_Mutation p.S344R 0.35 deleterious(0) probably_damaging(0.993) TCGA-EK-A3GK-01 20 32264410 32264410 G A E2F1 3'UTR 0.23 TCGA-EK-A3GK-01 20 32666308 32666308 C G RALY Intron 0.33 TCGA-EK-A3GK-01 20 33867892 33867892 G C EIF6 Silent p.L133L 0.29 TCGA-EK-A3GK-01 20 34022735 34022735 G C GDF5OS 3'UTR 0.23 TCGA-EK-A3GK-01 20 34110053 34110053 G C C20orf173 3'Flank 0.43 TCGA-EK-A3GK-01 20 34208795 34208795 C G SPAG4 Intron 0.27 TCGA-EK-A3GK-01 20 34542537 34542537 G C SCAND1 5'UTR 0.29 TCGA-EK-A3GK-01 20 34817874 34817874 C G EPB41L1 3'UTR 0.24 TCGA-EK-A3GK-01 20 35128773 35128773 G A DLGAP4 Silent p.Q754Q 0.18 TCGA-EK-A3GK-01 20 35129008 35129008 G A DLGAP4 Missense_Mutation p.E833K 0.30 deleterious(0) possibly_damaging(0.615) TCGA-EK-A3GK-01 20 35800374 35800374 C T MROH8 Missense_Mutation p.E183K 0.20 deleterious_low_confidence(0.03) benign(0.076) TCGA-EK-A3GK-01 20 36634660 36634660 C T TTI1 Silent p.L814L 0.33 TCGA-EK-A3GK-01 20 37005418 37005418 C G LBP 3'UTR 0.12 TCGA-EK-A3GK-01 20 39794982 39794982 G C PLCG1 Missense_Mutation p.E650Q 0.33 tolerated(0.12) possibly_damaging(0.821) TCGA-EK-A3GK-01 20 40040818 40040818 C G CHD6 Missense_Mutation p.R2406T 0.18 deleterious(0) possibly_damaging(0.816) TCGA-EK-A3GK-01 20 42086761 42086761 G A SRSF6 Missense_Mutation p.E30K 0.23 deleterious(0.01) possibly_damaging(0.903) TCGA-EK-A3GK-01 20 44048994 44048994 C T PIGT Silent p.F264F 0.20 TCGA-EK-A3GK-01 20 44184337 44184337 C T WFDC8 Intron 0.25 TCGA-EK-A3GK-01 20 44513514 44513514 G C ZSWIM1 3'UTR 0.35 TCGA-EK-A3GK-01 20 44517472 44517472 C T NEURL2 Silent p.R261R 0.19 TCGA-EK-A3GK-01 20 45023085 45023085 C G ELMO2 Missense_Mutation p.E13Q 0.23 tolerated(0.52) benign(0.036) TCGA-EK-A3GK-01 20 45315590 45315590 G C TP53RK Missense_Mutation p.F188L 0.18 tolerated(0.07) possibly_damaging(0.733) TCGA-EK-A3GK-01 20 45630107 45630107 C G EYA2 Missense_Mutation p.F50L 0.33 tolerated(0.16) benign(0.001) TCGA-EK-A3GK-01 20 4680616 4680616 G C PRNP Silent p.L250L 0.50 TCGA-EK-A3GK-01 20 47569353 47569353 C T ARFGEF2 Nonsense_Mutation p.Q179* 0.29 TCGA-EK-A3GK-01 20 47872368 47872368 G A ZNFX1 Silent p.L927L 0.26 TCGA-EK-A3GK-01 20 4864395 4864395 C T SLC23A2 Silent p.L239L 0.71 TCGA-EK-A3GK-01 20 49509639 49509639 C A ADNP Nonsense_Mutation p.E538* 0.25 TCGA-EK-A3GK-01 20 50418912 50418912 G C SALL4 Missense_Mutation p.I12M 0.19 deleterious(0.01) possibly_damaging(0.494) TCGA-EK-A3GK-01 20 52561187 52561187 C G BCAS1 3'UTR 0.32 TCGA-EK-A3GK-01 20 52601929 52601929 G A BCAS1 Missense_Mutation p.S346L 0.21 tolerated(0.19) benign(0.009) TCGA-EK-A3GK-01 20 56098946 56098946 C G CTCFL Missense_Mutation p.E106Q 0.07 tolerated(0.18) benign(0.077) TCGA-EK-A3GK-01 20 57599843 57599843 G A TUBB1 3'UTR 0.21 TCGA-EK-A3GK-01 20 58455490 58455490 C G SYCP2 Missense_Mutation p.D937H 0.27 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 20 58520099 58520099 G C FAM217B Missense_Mutation p.E367D 0.19 tolerated(0.3) probably_damaging(0.988) TCGA-EK-A3GK-01 20 58883613 58883613 C G MIR646 RNA 0.26 TCGA-EK-A3GK-01 20 5905674 5905674 G C CHGB Missense_Mutation p.E671D 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-EK-A3GK-01 20 60912957 60912957 G A LAMA5 Silent p.L643L 0.06 TCGA-EK-A3GK-01 20 60994665 60994665 C G RBBP8NL Missense_Mutation p.E13D 0.19 tolerated(1) benign(0.009) TCGA-EK-A3GK-01 20 61290116 61290116 G A SLCO4A1 Missense_Mutation p.R295Q 0.29 tolerated(0.42) benign(0.009) TCGA-EK-A3GK-01 20 61525016 61525016 A T DIDO1 Splice_Site p.X1034_splice 0.65 TCGA-EK-A3GK-01 20 61834943 61834943 G A YTHDF1 Nonsense_Mutation p.Q117* 0.05 TCGA-EK-A3GK-01 20 62272061 62272061 C T STMN3 3'UTR 0.38 TCGA-EK-A3GK-01 20 62324337 62324337 G A RTEL1 Silent p.K968K 0.35 TCGA-EK-A3GK-01 20 62660803 62660803 G C PRPF6 Missense_Mutation p.K835N 0.28 tolerated(0.07) benign(0.126) TCGA-EK-A3GK-01 20 744585 744585 C T SLC52A3 Silent p.E210E 0.50 TCGA-EK-A3GK-01 20 8665686 8665686 C G PLCB1 Missense_Mutation p.H324D 0.24 deleterious(0.02) possibly_damaging(0.855) TCGA-EK-A3GK-01 21 11039250 11039250 C G BAGE2 RNA 0.07 TCGA-EK-A3GK-01 21 15596832 15596832 C T RBM11 Nonsense_Mutation p.Q136* 0.54 TCGA-EK-A3GK-01 21 27107348 27107348 G A ATP5J 5'Flank 0.41 TCGA-EK-A3GK-01 21 32931906 32931906 G A TIAM1 5'Flank 0.31 TCGA-EK-A3GK-01 21 33750820 33750820 G A URB1 Nonsense_Mutation p.Q200* 0.40 TCGA-EK-A3GK-01 21 35154300 35154300 G C ITSN1 Missense_Mutation p.D563H 0.44 deleterious(0.03) possibly_damaging(0.894) TCGA-EK-A3GK-01 21 35469468 35469468 C G SLC5A3 Missense_Mutation p.F657L 0.47 tolerated(0.89) benign(0) TCGA-EK-A3GK-01 21 35478283 35478283 G C SLC5A3 3'UTR 0.27 TCGA-EK-A3GK-01 21 40969553 40969553 C A C21orf88 3'UTR 0.26 TCGA-EK-A3GK-01 21 43792022 43792022 G C TMPRSS3 3'UTR 0.41 TCGA-EK-A3GK-01 21 43955658 43955658 C T SLC37A1 Silent p.L116L 0.29 TCGA-EK-A3GK-01 21 44430304 44430304 C G PKNOX1 Missense_Mutation p.F107L 0.33 tolerated(0.23) probably_damaging(0.97) TCGA-EK-A3GK-01 21 45179058 45179058 G T PDXK 3'UTR 0.17 TCGA-EK-A3GK-01 21 45675965 45675965 C G DNMT3L Missense_Mutation p.E197Q 0.48 tolerated(0.06) benign(0.058) TCGA-EK-A3GK-01 21 45924684 45924684 G A TSPEAR Missense_Mutation p.S612L 0.27 tolerated(0.07) benign(0.016) TCGA-EK-A3GK-01 21 46066445 46066445 G C KRTAP10-11 Missense_Mutation p.E24Q 0.44 deleterious(0.01) unknown(0) TCGA-EK-A3GK-01 21 46074281 46074281 G A KRTAP12-4 Missense_Mutation p.S84F 0.36 deleterious(0) probably_damaging(0.919) TCGA-EK-A3GK-01 21 46117140 46117140 G C KRTAP10-12 Silent p.L8L 0.09 TCGA-EK-A3GK-01 21 46225784 46225784 G A SUMO3 3'UTR 0.53 TCGA-EK-A3GK-01 21 46875486 46875486 C T COL18A1 Silent p.L14L 0.07 TCGA-EK-A3GK-01 21 46925806 46925806 G C COL18A1 Missense_Mutation p.E1228Q 0.40 possibly_damaging(0.852) TCGA-EK-A3GK-01 21 46925859 46925859 G C COL18A1 Missense_Mutation p.Q1245H 0.38 benign(0.07) TCGA-EK-A3GK-01 21 47250213 47250213 G A PCBP3 Intron 0.26 TCGA-EK-A3GK-01 21 47690437 47690437 C A MCM3AP Nonsense_Mutation p.E836* 0.38 TCGA-EK-A3GK-01 21 47865279 47865279 G A PCNT 3'UTR 0.31 TCGA-EK-A3GK-01 21 47969760 47969760 G T DIP2A Nonsense_Mutation p.E867* 0.46 TCGA-EK-A3GK-01 22 18069913 18069913 C G SLC25A18 Missense_Mutation p.Q141E 0.48 tolerated(0.34) benign(0.004) TCGA-EK-A3GK-01 22 18301882 18301910 GGGAGTTGGGGCCCCTACAGGGAAGGAAG AAA MICAL3 Splice_Site p.X1178_splice 0.31 TCGA-EK-A3GK-01 22 18910339 18910339 C T PRODH Silent p.A280A 0.30 TCGA-EK-A3GK-01 22 18981843 18981843 G T DGCR5 RNA 0.35 TCGA-EK-A3GK-01 22 19466627 19466627 G A UFD1L 5'UTR 0.19 TCGA-EK-A3GK-01 22 20030962 20030962 C T TANGO2 Silent p.L47L 0.23 TCGA-EK-A3GK-01 22 20093767 20093767 C T DGCR8 Missense_Mutation p.S619F 0.36 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 22 20940943 20940943 C T MED15 Silent p.L773L 0.30 TCGA-EK-A3GK-01 22 21356609 21356609 C G AC002472.1 3'Flank 0.20 TCGA-EK-A3GK-01 22 21368163 21368163 C G P2RX6 5'Flank 0.44 TCGA-EK-A3GK-01 22 21991321 21991321 G A CCDC116 Missense_Mutation p.E602K 0.35 tolerated_low_confidence(0.3) unknown(0) TCGA-EK-A3GK-01 22 22311446 22311446 C A TOP3B 3'UTR 0.20 TCGA-EK-A3GK-01 22 23466613 23466613 C T RTDR1 Intron 0.38 TCGA-EK-A3GK-01 22 24179859 24179859 G A DERL3 Silent p.L170L 0.29 TCGA-EK-A3GK-01 22 24451464 24451464 C T CABIN1 Missense_Mutation p.S312F 0.22 tolerated(0.54) benign(0.002) TCGA-EK-A3GK-01 22 26118461 26118461 C T ADRBK2 3'UTR 0.21 TCGA-EK-A3GK-01 22 29456577 29456577 C T C22orf31 Silent p.K86K 0.45 TCGA-EK-A3GK-01 22 29879471 29879471 G A NEFH Missense_Mutation p.E331K 0.29 deleterious(0) unknown(0) TCGA-EK-A3GK-01 22 30805241 30805241 C G SEC14L2 Silent p.L163L 0.27 TCGA-EK-A3GK-01 22 31722733 31722733 G C PATZ1 3'UTR 0.31 TCGA-EK-A3GK-01 22 33327449 33327449 C G SYN3 Missense_Mutation p.L129F 0.24 deleterious(0) unknown(0) TCGA-EK-A3GK-01 22 33673147 33673147 C G LARGE Missense_Mutation p.E658Q 0.32 deleterious(0) probably_damaging(0.984) TCGA-EK-A3GK-01 22 36556828 36556828 G C APOL3 Missense_Mutation p.Q38E 0.38 benign(0.042) TCGA-EK-A3GK-01 22 37480241 37480241 G C TMPRSS6 Intron 0.27 TCGA-EK-A3GK-01 22 39003465 39003465 G A FAM227A Missense_Mutation p.S347L 0.38 tolerated(0.45) benign(0.006) TCGA-EK-A3GK-01 22 39530549 39530549 G A CBX7 Missense_Mutation p.S152L 0.40 deleterious(0.01) benign(0.148) TCGA-EK-A3GK-01 22 40730944 40730944 G A TNRC6B 3'UTR 0.19 TCGA-EK-A3GK-01 22 41349561 41349561 G C RBX1 Missense_Mutation p.W27C 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-EK-A3GK-01 22 41574358 41574358 C T EP300 Nonsense_Mutation p.Q2215* 0.26 TCGA-EK-A3GK-01 22 41625702 41625702 C T CHADL 3'UTR 0.29 TCGA-EK-A3GK-01 22 41832533 41832533 C G TOB2 Missense_Mutation p.D273H 0.40 deleterious(0.02) benign(0.208) TCGA-EK-A3GK-01 22 41833211 41833211 C T TOB2 Missense_Mutation p.E47K 0.39 deleterious(0.01) benign(0.086) TCGA-EK-A3GK-01 22 42385647 42385647 G A SEPT3 Missense_Mutation p.D210N 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-EK-A3GK-01 22 42394815 42394815 G C WBP2NL 5'UTR 0.22 TCGA-EK-A3GK-01 22 42473571 42473571 G C FAM109B Missense_Mutation p.D92H 0.43 deleterious(0.02) probably_damaging(0.924) TCGA-EK-A3GK-01 22 43575746 43575746 C T TTLL12 Missense_Mutation p.R240Q 0.36 deleterious(0) probably_damaging(0.978) TCGA-EK-A3GK-01 22 46067898 46067898 C T ATXN10 5'UTR 0.30 TCGA-EK-A3GK-01 22 48942355 48942355 G C CTA-299D3.8 Missense_Mutation p.S14C 0.44 possibly_damaging(0.848) TCGA-EK-A3GK-01 22 50282366 50282366 C T ZBED4 3'UTR 0.30 TCGA-EK-A3GK-01 22 50470349 50470349 C G TTLL8 Missense_Mutation p.M507I 0.09 deleterious(0.01) possibly_damaging(0.738) TCGA-EK-A3GK-01 22 50656698 50656698 G C TUBGCP6 Missense_Mutation p.F1696L 0.33 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 22 51121780 51121780 C T SHANK3 Missense_Mutation p.R300C 0.15 probably_damaging(1) TCGA-EK-A3GK-01 22 51237643 51237643 C G RPL23AP82 RNA 0.42 TCGA-EK-A3GK-01 2 105897103 105897103 G A TGFBRAP1 Missense_Mutation p.S400F 0.10 deleterious(0.02) benign(0.013) TCGA-EK-A3GK-01 2 108489090 108489090 G A RGPD4 Missense_Mutation p.E1544K 0.20 deleterious(0.01) probably_damaging(0.952) TCGA-EK-A3GK-01 2 109381095 109381095 C T RANBP2 Missense_Mutation p.S1367L 0.35 deleterious(0.04) benign(0.034) TCGA-EK-A3GK-01 2 112638298 112638298 C T ANAPC1 Silent p.L35L 0.44 TCGA-EK-A3GK-01 2 113146919 113146919 C G RGPD8 Silent p.L1201L 0.30 TCGA-EK-A3GK-01 2 113147110 113147110 C T RGPD8 Missense_Mutation p.D1138N 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-EK-A3GK-01 2 120362840 120362840 G T PCDP1 Nonsense_Mutation p.E370* 0.47 TCGA-EK-A3GK-01 2 120980298 120980298 C T TMEM185B Silent p.L85L 0.53 TCGA-EK-A3GK-01 2 121107613 121107613 C T INHBB 3'UTR 0.32 TCGA-EK-A3GK-01 2 128062215 128062215 G A MAP3K2 3'UTR 0.40 TCGA-EK-A3GK-01 2 131813260 131813260 G C FAM168B Missense_Mutation p.P55A 0.46 tolerated_low_confidence(0.51) benign(0.054) TCGA-EK-A3GK-01 2 141253266 141253266 C G LRP1B Missense_Mutation p.D2968H 0.53 probably_damaging(0.961) TCGA-EK-A3GK-01 2 1457477 1457477 G T TPO Missense_Mutation p.R165I 0.33 tolerated(0.05) possibly_damaging(0.783) TCGA-EK-A3GK-01 2 152118313 152118313 G C RBM43 5'UTR 0.05 TCGA-EK-A3GK-01 2 152659312 152659312 G C ARL5A 3'UTR 0.23 TCGA-EK-A3GK-01 2 152698450 152698450 G T CACNB4 Silent p.L423L 0.49 TCGA-EK-A3GK-01 2 158178248 158178248 C T ERMN Silent p.Q143Q 0.39 TCGA-EK-A3GK-01 2 168101840 168101840 G C XIRP2 Missense_Mutation p.R1313T 0.41 benign(0.169) TCGA-EK-A3GK-01 2 170371123 170371123 C T KLHL41 Silent p.L384L 0.47 TCGA-EK-A3GK-01 2 170440888 170440888 G A PPIG 5'UTR 0.31 TCGA-EK-A3GK-01 2 170592188 170592188 C T KLHL23 Silent p.L222L 0.52 TCGA-EK-A3GK-01 2 170783844 170783844 G C UBR3 Missense_Mutation p.E785Q 0.27 deleterious(0.02) benign(0.32) TCGA-EK-A3GK-01 2 178985070 178985070 G C RBM45 Missense_Mutation p.D203H 0.47 deleterious(0.01) benign(0.126) TCGA-EK-A3GK-01 2 179320761 179320761 G C DFNB59 Missense_Mutation p.L144F 0.06 deleterious(0.04) probably_damaging(0.999) TCGA-EK-A3GK-01 2 179416576 179416576 C G TTN Missense_Mutation p.D30351H 0.46 TCGA-EK-A3GK-01 2 179424573 179424573 C T TTN Silent p.K28762K 0.50 TCGA-EK-A3GK-01 2 179424576 179424576 C T TTN Silent p.R28761R 0.50 TCGA-EK-A3GK-01 2 179425118 179425118 C G TTN Missense_Mutation p.E28581Q 0.44 TCGA-EK-A3GK-01 2 179597987 179597987 C T TTN Missense_Mutation p.E5345K 0.25 TCGA-EK-A3GK-01 2 179598510 179598510 C T TTN Missense_Mutation p.M5202I 0.38 TCGA-EK-A3GK-01 2 179606109 179606109 G A TTN Nonsense_Mutation p.Q3951* 0.46 TCGA-EK-A3GK-01 2 179974701 179974701 G A SESTD1 Silent p.I672I 0.40 TCGA-EK-A3GK-01 2 182780221 182780221 C G SSFA2 Missense_Mutation p.I618M 0.31 tolerated(0.22) benign(0.009) TCGA-EK-A3GK-01 2 183066180 183066180 C T PDE1A Missense_Mutation p.E387K 0.44 deleterious(0) possibly_damaging(0.566) TCGA-EK-A3GK-01 2 183731215 183731215 G C FRZB Silent p.L22L 0.48 TCGA-EK-A3GK-01 2 191114420 191114420 C G HIBCH Missense_Mutation p.L232F 0.22 deleterious(0.03) benign(0.067) TCGA-EK-A3GK-01 2 1920995 1920995 C A MYT1L Missense_Mutation p.D532Y 0.35 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 2 192711645 192711645 C G SDPR Missense_Mutation p.E3Q 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EK-A3GK-01 2 197596856 197596856 G A CCDC150 Missense_Mutation p.E1057K 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-EK-A3GK-01 2 197791251 197791251 G A PGAP1 Silent p.F30F 0.37 TCGA-EK-A3GK-01 2 197873681 197873681 C T ANKRD44 Missense_Mutation p.D642N 0.39 deleterious(0.02) possibly_damaging(0.823) TCGA-EK-A3GK-01 2 201791584 201791584 C T ORC2 Silent p.K319K 0.48 TCGA-EK-A3GK-01 2 203242268 203242268 C A BMPR2 Missense_Mutation p.A24E 0.62 tolerated(0.09) benign(0.015) TCGA-EK-A3GK-01 2 207619773 207619773 C T MDH1B Silent p.A290A 0.59 TCGA-EK-A3GK-01 2 216225546 216225546 C T FN1 3'UTR 0.64 TCGA-EK-A3GK-01 2 216242904 216242904 G C FN1 Missense_Mutation p.L1902V 0.33 tolerated(0.27) possibly_damaging(0.884) TCGA-EK-A3GK-01 2 219211024 219211024 C G PNKD 3'UTR 0.27 TCGA-EK-A3GK-01 2 219825346 219825346 C T CDK5R2 Silent p.L268L 0.56 TCGA-EK-A3GK-01 2 219868819 219868819 C T CCDC108 Missense_Mutation p.E1804K 0.35 tolerated(0.36) unknown(0) TCGA-EK-A3GK-01 2 220094305 220094305 C T ATG9A 5'Flank 0.79 TCGA-EK-A3GK-01 2 220418361 220418361 C T OBSL1 Missense_Mutation p.E1642K 0.47 tolerated(0.06) probably_damaging(0.937) TCGA-EK-A3GK-01 2 220420784 220420784 C G OBSL1 Missense_Mutation p.E1523Q 0.58 tolerated(0.4) probably_damaging(0.983) TCGA-EK-A3GK-01 2 231313845 231313845 C T SP100 Missense_Mutation p.S189L 0.64 tolerated(0.32) benign(0.009) TCGA-EK-A3GK-01 2 232234713 232234713 G C ARMC9 RNA 0.71 TCGA-EK-A3GK-01 2 232576627 232576627 G C PTMA Missense_Mutation p.D50H 0.07 deleterious(0.03) unknown(0) TCGA-EK-A3GK-01 2 232672434 232672434 C T COPS7B 3'UTR 0.38 TCGA-EK-A3GK-01 2 232672627 232672627 C G COPS7B 3'UTR 0.70 TCGA-EK-A3GK-01 2 237490140 237490140 C T ACKR3 Silent p.I344I 0.69 TCGA-EK-A3GK-01 2 238249571 238249571 C G COL6A3 Missense_Mutation p.R2663T 0.67 unknown(0) TCGA-EK-A3GK-01 2 241390366 241390366 G A AC110619.2 Intron 0.69 TCGA-EK-A3GK-01 2 241516041 241516041 G C RNPEPL1 Missense_Mutation p.E303Q 0.68 tolerated(0.16) benign(0.133) TCGA-EK-A3GK-01 2 241697000 241697000 G C KIF1A Missense_Mutation p.S865C 0.63 tolerated(0.08) possibly_damaging(0.518) TCGA-EK-A3GK-01 2 242127927 242127927 G C ANO7 5'UTR 0.58 TCGA-EK-A3GK-01 2 242149031 242149031 C T ANO7 Missense_Mutation p.S501F 0.81 tolerated(0.67) benign(0.035) TCGA-EK-A3GK-01 2 242430536 242430536 G C FARP2 Missense_Mutation p.K855N 0.69 tolerated(0.06) possibly_damaging(0.451) TCGA-EK-A3GK-01 2 24300579 24300579 G C TP53I3 Missense_Mutation p.S290C 0.43 deleterious(0.02) benign(0.004) TCGA-EK-A3GK-01 2 24469689 24469689 C G ITSN2 Missense_Mutation p.R1121T 0.52 deleterious(0.01) unknown(0) TCGA-EK-A3GK-01 2 25456060 25456060 C T DNMT3A 3'UTR 0.41 TCGA-EK-A3GK-01 2 25972626 25972627 GA - ASXL2 Frame_Shift_Del p.S600Tfs*7 0.36 TCGA-EK-A3GK-01 2 26152236 26152236 G A KIF3C Silent p.L742L 0.33 TCGA-EK-A3GK-01 2 26410198 26410198 C T GAREML Missense_Mutation p.S566F 0.07 deleterious(0) possibly_damaging(0.522) TCGA-EK-A3GK-01 2 26414024 26414024 C T HADHA 3'UTR 0.38 TCGA-EK-A3GK-01 2 26607905 26607905 C T EPT1 Silent p.F270F 0.41 TCGA-EK-A3GK-01 2 27293078 27293078 G C AGBL5 Missense_Mutation p.E870Q 0.19 deleterious_low_confidence(0.01) benign(0.134) TCGA-EK-A3GK-01 2 27306543 27306543 G T EMILIN1 Nonsense_Mutation p.E702* 0.45 TCGA-EK-A3GK-01 2 27306552 27306552 G T EMILIN1 Nonsense_Mutation p.E705* 0.40 TCGA-EK-A3GK-01 2 27505756 27505756 G A TRIM54 Missense_Mutation p.D53N 0.61 deleterious(0.02) benign(0.063) TCGA-EK-A3GK-01 2 27551770 27551770 C G GTF3C2 Missense_Mutation p.D690H 0.13 deleterious(0) probably_damaging(0.983) TCGA-EK-A3GK-01 2 27679448 27679448 C T IFT172 Missense_Mutation p.E1101K 0.44 deleterious(0.01) possibly_damaging(0.885) TCGA-EK-A3GK-01 2 27709039 27709039 G C IFT172 Intron 0.24 TCGA-EK-A3GK-01 2 27802541 27802541 C G C2orf16 Silent p.L1034L 0.19 TCGA-EK-A3GK-01 2 27845348 27845348 C G ZNF512 3'UTR 0.36 TCGA-EK-A3GK-01 2 29152532 29152532 C T WDR43 Missense_Mutation p.L465F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 2 29165188 29165188 C A WDR43 Nonsense_Mutation p.S582* 0.34 TCGA-EK-A3GK-01 2 29405194 29405194 C T CLIP4 3'UTR 0.28 TCGA-EK-A3GK-01 2 32463279 32463279 G A NLRC4 Silent p.L815L 0.50 TCGA-EK-A3GK-01 2 32678919 32678919 C T BIRC6 Silent p.F1554F 0.16 TCGA-EK-A3GK-01 2 33783806 33783806 C T RASGRP3 Silent p.I591I 0.26 TCGA-EK-A3GK-01 2 33953103 33953103 G A AC009499.1 Intron 0.50 TCGA-EK-A3GK-01 2 3481508 3481508 G A TRAPPC12 Missense_Mutation p.E607K 0.37 deleterious(0.04) possibly_damaging(0.792) TCGA-EK-A3GK-01 2 36805804 36805806 TTC - FEZ2 In_Frame_Del p.K282del 0.41 TCGA-EK-A3GK-01 2 37365460 37365460 C G EIF2AK2 Missense_Mutation p.E214Q 0.60 tolerated(0.08) benign(0.028) TCGA-EK-A3GK-01 2 42720542 42720542 G A KCNG3 Missense_Mutation p.R34C 0.46 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 2 43452529 43452529 C T ZFP36L2 Silent p.Q138Q 0.47 TCGA-EK-A3GK-01 2 44396048 44396048 G A PPM1B 5'UTR 0.51 TCGA-EK-A3GK-01 2 46611842 46611842 C G EPAS1 3'UTR 0.36 TCGA-EK-A3GK-01 2 46707611 46707611 G A TMEM247 Missense_Mutation p.G62E 0.44 tolerated_low_confidence(0.48) benign(0.311) TCGA-EK-A3GK-01 2 46739475 46739475 G A ATP6V1E2 Nonsense_Mutation p.R126* 0.42 TCGA-EK-A3GK-01 2 48825423 48825423 C T STON1 3'UTR 0.43 TCGA-EK-A3GK-01 2 54874325 54874325 G A SPTBN1 Missense_Mutation p.E1642K 0.56 deleterious(0.02) benign(0.043) TCGA-EK-A3GK-01 2 55775664 55775664 C T SMEK2 3'UTR 0.29 TCGA-EK-A3GK-01 2 58390039 58390039 C G FANCL Missense_Mutation p.E294Q 0.36 tolerated(0.1) benign(0.017) TCGA-EK-A3GK-01 2 60780445 60780445 C T BCL11A 5'UTR 0.33 TCGA-EK-A3GK-01 2 61018984 61018984 C T PAPOLG Silent p.Y495Y 0.50 TCGA-EK-A3GK-01 2 62733356 62733356 G A TMEM17 5'UTR 0.52 TCGA-EK-A3GK-01 2 70166235 70166235 G A MXD1 3'UTR 0.31 TCGA-EK-A3GK-01 2 7033825 7033825 G C RSAD2 Silent p.L304L 0.27 TCGA-EK-A3GK-01 2 70528713 70528713 C T FAM136A Intron 0.25 TCGA-EK-A3GK-01 2 73716937 73716937 G A ALMS1 Silent p.Q2616Q 0.71 TCGA-EK-A3GK-01 2 73828516 73828516 G C ALMS1 Missense_Mutation p.E4022Q 0.33 benign(0.195) TCGA-EK-A3GK-01 2 73868743 73868743 G C NAT8 Missense_Mutation p.H5D 0.46 deleterious(0) possibly_damaging(0.703) TCGA-EK-A3GK-01 2 74437150 74437150 C T MTHFD2 Missense_Mutation p.T215I 0.36 deleterious(0.01) possibly_damaging(0.904) TCGA-EK-A3GK-01 2 84954818 84954818 C G DNAH6 Missense_Mutation p.S3333C 0.50 deleterious(0.04) benign(0.107) TCGA-EK-A3GK-01 2 85771556 85771556 C G MAT2A 3'UTR 0.29 TCGA-EK-A3GK-01 2 86014109 86014109 C T ATOH8 3'UTR 0.35 TCGA-EK-A3GK-01 2 89156812 89156812 G T IGKC 3'UTR 0.51 TCGA-EK-A3GK-01 2 8931331 8931331 C G KIDINS220 Missense_Mutation p.D434H 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-EK-A3GK-01 2 95815401 95815401 G A ZNF514 Silent p.L277L 0.42 TCGA-EK-A3GK-01 2 95943221 95943221 C T PROM2 Silent p.L294L 0.14 TCGA-EK-A3GK-01 2 9695850 9695850 C G ADAM17 5'UTR 0.28 TCGA-EK-A3GK-01 2 97875577 97875577 G C ANKRD36 Missense_Mutation p.R1112T 0.17 tolerated_low_confidence(1) benign(0.227) TCGA-EK-A3GK-01 2 99182575 99182575 G A INPP4A Missense_Mutation p.R793Q 0.34 tolerated(0.14) probably_damaging(0.997) TCGA-EK-A3GK-01 3 105086182 105086182 G A ALCAM 5'UTR 0.60 TCGA-EK-A3GK-01 3 105377341 105377341 G C CBLB 3'UTR 0.36 TCGA-EK-A3GK-01 3 107941148 107941148 C G IFT57 Missense_Mutation p.V8L 0.10 deleterious_low_confidence(0.05) benign(0.005) TCGA-EK-A3GK-01 3 108351882 108351882 C T DZIP3 Missense_Mutation p.S260F 0.38 tolerated(0.51) benign(0.016) TCGA-EK-A3GK-01 3 112081579 112081579 G A CD200 3'Flank 0.21 TCGA-EK-A3GK-01 3 113672893 113672893 C T ZDHHC23 Nonsense_Mutation p.Q170* 0.29 TCGA-EK-A3GK-01 3 113729736 113729736 C T KIAA1407 Silent p.K432K 0.54 TCGA-EK-A3GK-01 3 114099677 114099677 G A ZBTB20 5'UTR 0.29 TCGA-EK-A3GK-01 3 115560818 115560818 C G LSAMP Missense_Mutation p.E265Q 0.38 tolerated(0.19) possibly_damaging(0.664) TCGA-EK-A3GK-01 3 120320292 120320292 C A NDUFB4 Intron 0.33 TCGA-EK-A3GK-01 3 121195434 121195434 G C POLQ Missense_Mutation p.L2120V 0.28 deleterious(0.01) benign(0.113) TCGA-EK-A3GK-01 3 121410101 121410101 C T GOLGB1 Missense_Mutation p.E2704K 0.33 probably_damaging(0.999) TCGA-EK-A3GK-01 3 121741028 121741028 C G ILDR1 5'UTR 0.09 TCGA-EK-A3GK-01 3 122144410 122144410 C T KPNA1 3'UTR 0.54 TCGA-EK-A3GK-01 3 123675218 123675218 G C CCDC14 Missense_Mutation p.S96C 0.33 deleterious(0) possibly_damaging(0.843) TCGA-EK-A3GK-01 3 124181439 124181439 C G KALRN Missense_Mutation p.I1328M 0.33 deleterious(0) possibly_damaging(0.744) TCGA-EK-A3GK-01 3 124207102 124207102 G A KALRN Missense_Mutation p.E1444K 0.44 deleterious(0.03) benign(0.218) TCGA-EK-A3GK-01 3 124642461 124642461 C G MUC13 Missense_Mutation p.D183H 0.56 tolerated(0.09) possibly_damaging(0.887) TCGA-EK-A3GK-01 3 12977762 12977762 C T IQSEC1 Missense_Mutation p.E266K 0.40 tolerated(0.14) benign(0.14) TCGA-EK-A3GK-01 3 134266187 134266187 G C CEP63 Missense_Mutation p.E314Q 0.06 deleterious(0.02) benign(0.429) TCGA-EK-A3GK-01 3 134369692 134369692 C G KY Silent p.P37P 0.45 TCGA-EK-A3GK-01 3 137787051 137787051 G C DZIP1L Missense_Mutation p.P592A 0.39 tolerated(0.05) benign(0.437) TCGA-EK-A3GK-01 3 138178868 138178868 C T ESYT3 Nonsense_Mutation p.Q244* 0.29 TCGA-EK-A3GK-01 3 138433528 138433528 C T PIK3CB Missense_Mutation p.E362K 0.30 tolerated(0.31) probably_damaging(0.997) TCGA-EK-A3GK-01 3 138453525 138453525 G A PIK3CB Missense_Mutation p.S308L 0.14 tolerated(0.22) benign(0.004) TCGA-EK-A3GK-01 3 139063526 139063526 G C MRPS22 Intron 0.30 TCGA-EK-A3GK-01 3 141162301 141162301 C G ZBTB38 Silent p.L357L 0.18 TCGA-EK-A3GK-01 3 142078732 142078732 C T XRN1 Missense_Mutation p.E1146K 0.33 tolerated(0.23) benign(0.109) TCGA-EK-A3GK-01 3 142521181 142521181 C G TRPC1 Missense_Mutation p.F584L 0.36 deleterious(0.01) possibly_damaging(0.831) TCGA-EK-A3GK-01 3 143271214 143271214 C G SLC9A9 Missense_Mutation p.R360T 0.37 deleterious(0) possibly_damaging(0.56) TCGA-EK-A3GK-01 3 148756954 148756954 G C HLTF Nonsense_Mutation p.S893* 0.50 TCGA-EK-A3GK-01 3 151475084 151475084 G A AADACL2 Missense_Mutation p.G303E 0.24 deleterious(0.01) possibly_damaging(0.896) TCGA-EK-A3GK-01 3 152018065 152018065 C G MBNL1 Nonsense_Mutation p.S28* 0.40 TCGA-EK-A3GK-01 3 152554066 152554066 G C P2RY1 Missense_Mutation p.K165N 0.21 tolerated(0.59) probably_damaging(0.998) TCGA-EK-A3GK-01 3 153839770 153839770 C T ARHGEF26 5'UTR 0.42 TCGA-EK-A3GK-01 3 15483467 15483467 G T EAF1 3'UTR 0.58 TCGA-EK-A3GK-01 3 155198792 155198792 C T PLCH1 Missense_Mutation p.D1683N 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.77) TCGA-EK-A3GK-01 3 155199221 155199221 C T PLCH1 Missense_Mutation p.D1540N 0.39 deleterious(0.02) probably_damaging(1) TCGA-EK-A3GK-01 3 155199584 155199584 C T PLCH1 Missense_Mutation p.E1419K 0.56 tolerated_low_confidence(0.12) benign(0.005) TCGA-EK-A3GK-01 3 155199800 155199800 C T PLCH1 Missense_Mutation p.D1347N 0.19 tolerated_low_confidence(0.13) benign(0.005) TCGA-EK-A3GK-01 3 155200384 155200384 G A PLCH1 Missense_Mutation p.S1152F 0.29 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-EK-A3GK-01 3 155200812 155200812 C T PLCH1 Silent p.G1009G 0.37 TCGA-EK-A3GK-01 3 160135675 160135675 C G SMC4 Silent p.L534L 0.43 TCGA-EK-A3GK-01 3 160155867 160155867 G C TRIM59 Missense_Mutation p.L369V 0.36 tolerated(0.43) benign(0.004) TCGA-EK-A3GK-01 3 161147340 161147340 C T RP11-3P17.5 RNA 0.24 TCGA-EK-A3GK-01 3 16357719 16357719 G C RFTN1 3'UTR 0.42 TCGA-EK-A3GK-01 3 164906555 164906555 G A SLITRK3 Silent p.F688F 0.39 TCGA-EK-A3GK-01 3 164908635 164908635 C G SLITRK3 5'UTR 0.21 TCGA-EK-A3GK-01 3 16635205 16635205 G C DAZL Nonsense_Mutation p.S251* 0.42 TCGA-EK-A3GK-01 3 169482826 169482826 C T ACTRT3 3'Flank 0.39 TCGA-EK-A3GK-01 3 169981171 169981171 C G PRKCI Missense_Mutation p.F106L 0.41 tolerated(0.09) probably_damaging(0.987) TCGA-EK-A3GK-01 3 170204088 170204088 C G SLC7A14 Missense_Mutation p.E277Q 0.38 deleterious(0.02) probably_damaging(1) TCGA-EK-A3GK-01 3 17413625 17413625 C T TBC1D5 Missense_Mutation p.D313N 0.42 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 3 179082959 179082959 C T MFN1 Silent p.F233F 0.32 TCGA-EK-A3GK-01 3 179082985 179082985 C G MFN1 Missense_Mutation p.S242C 0.38 deleterious(0.02) benign(0.043) TCGA-EK-A3GK-01 3 183014773 183014773 G C MCF2L2 Silent p.L496L 0.42 TCGA-EK-A3GK-01 3 183824491 183824491 C T HTR3E 3'Flank 0.33 TCGA-EK-A3GK-01 3 183899781 183899781 C G AP2M1 Silent p.V303V 0.46 TCGA-EK-A3GK-01 3 183899959 183899959 G T AP2M1 Silent p.L328L 0.55 TCGA-EK-A3GK-01 3 184870595 184870595 G T C3orf70 Nonsense_Mutation p.S6* 0.50 TCGA-EK-A3GK-01 3 185348513 185348513 C A SENP2 3'UTR 0.46 TCGA-EK-A3GK-01 3 186395416 186395416 G A HRG Missense_Mutation p.R441Q 0.30 tolerated_low_confidence(0.09) benign(0) TCGA-EK-A3GK-01 3 186504951 186504951 G A EIF4A2 Silent p.E269E 0.41 TCGA-EK-A3GK-01 3 187443392 187443392 G T BCL6 Silent p.I578I 0.31 TCGA-EK-A3GK-01 3 195461557 195461557 C G MUC20 3'Flank 0.33 TCGA-EK-A3GK-01 3 195474048 195474048 C G MUC4 Nonstop_Mutation p.*5413Sext*56 0.37 TCGA-EK-A3GK-01 3 195474200 195474200 C A MUC4 Silent p.L5362L 0.36 TCGA-EK-A3GK-01 3 195513986 195513986 G C MUC4 Missense_Mutation p.L1489V 0.17 unknown(0) TCGA-EK-A3GK-01 3 195515356 195515356 G A MUC4 Missense_Mutation p.S1032L 0.35 unknown(0) TCGA-EK-A3GK-01 3 195778052 195778052 G C TFRC 3'UTR 0.22 TCGA-EK-A3GK-01 3 195778697 195778697 G A TFRC 3'UTR 0.37 TCGA-EK-A3GK-01 3 197238739 197238739 C T BDH1 3'UTR 0.47 TCGA-EK-A3GK-01 3 32612168 32612168 G A DYNC1LI1 Missense_Mutation p.S32L 0.40 tolerated(0.22) possibly_damaging(0.651) TCGA-EK-A3GK-01 3 35750512 35750512 G C ARPP21 Intron 0.40 TCGA-EK-A3GK-01 3 36893237 36893237 G C TRANK1 Silent p.L1576L 0.42 TCGA-EK-A3GK-01 3 37031772 37031772 C G EPM2AIP1 3'UTR 0.37 TCGA-EK-A3GK-01 3 37459796 37459796 C T C3orf35 Intron 0.61 TCGA-EK-A3GK-01 3 37860633 37860633 G A ITGA9 3'UTR 0.42 TCGA-EK-A3GK-01 3 38047732 38047732 G A VILL Missense_Mutation p.E732K 0.36 tolerated(0.21) benign(0.019) TCGA-EK-A3GK-01 3 38047734 38047734 G A VILL Silent p.E732E 0.36 TCGA-EK-A3GK-01 3 38049823 38049823 C T PLCD1 Silent p.K667K 0.53 TCGA-EK-A3GK-01 3 38159078 38159078 C T DLEC1 Silent p.L1487L 0.35 TCGA-EK-A3GK-01 3 38565708 38565708 C G EXOG Nonsense_Mutation p.S321* 0.14 TCGA-EK-A3GK-01 3 3886887 3886887 G C LRRN1 Missense_Mutation p.D188H 0.19 deleterious(0.03) benign(0.056) TCGA-EK-A3GK-01 3 39229161 39229161 C T XIRP1 Silent p.Q592Q 0.41 TCGA-EK-A3GK-01 3 40557890 40557890 C T ZNF620 Nonsense_Mutation p.Q269* 0.33 TCGA-EK-A3GK-01 3 43640123 43640123 G C ANO10 Missense_Mutation p.Q125E 0.42 deleterious(0.03) possibly_damaging(0.677) TCGA-EK-A3GK-01 3 44683467 44683467 G C ZNF197 Missense_Mutation p.G282A 0.49 tolerated(0.63) benign(0.003) TCGA-EK-A3GK-01 3 44683559 44683559 G A ZNF197 Missense_Mutation p.E313K 0.36 tolerated(0.62) benign(0.001) TCGA-EK-A3GK-01 3 44935068 44935068 G C TGM4 Splice_Site p.X144_splice 0.26 TCGA-EK-A3GK-01 3 44959338 44959338 G A TGM4 3'Flank 0.41 TCGA-EK-A3GK-01 3 46008989 46008989 C T FYCO1 Missense_Mutation p.E613K 0.44 tolerated(1) benign(0.002) TCGA-EK-A3GK-01 3 47162374 47162374 G A SETD2 Missense_Mutation p.S1251L 0.35 deleterious_low_confidence(0) benign(0.11) TCGA-EK-A3GK-01 3 47618348 47618348 C A CSPG5 Missense_Mutation p.V390L 0.47 tolerated(0.17) probably_damaging(0.994) TCGA-EK-A3GK-01 3 47618349 47618349 C T CSPG5 Silent p.L389L 0.49 TCGA-EK-A3GK-01 3 4836777 4836777 C T ITPR1 Silent p.R2264R 0.40 TCGA-EK-A3GK-01 3 48611285 48611285 C G COL7A1 Intron 0.26 TCGA-EK-A3GK-01 3 48619011 48619011 C G COL7A1 Missense_Mutation p.D1593H 0.41 unknown(0) TCGA-EK-A3GK-01 3 48643248 48643248 C T UQCRC1 Silent p.E84E 0.35 TCGA-EK-A3GK-01 3 49049208 49049208 G C WDR6 Missense_Mutation p.E111Q 0.48 tolerated(0.54) benign(0.006) TCGA-EK-A3GK-01 3 49147892 49147892 G C USP19 Missense_Mutation p.Q1280E 0.48 deleterious(0.03) benign(0.282) TCGA-EK-A3GK-01 3 49151464 49151464 C G USP19 Missense_Mutation p.Q820H 0.20 tolerated(0.53) benign(0.005) TCGA-EK-A3GK-01 3 49397520 49397520 G A RHOA 3'UTR 0.20 TCGA-EK-A3GK-01 3 49695041 49695041 C G BSN Silent p.V2684V 0.34 TCGA-EK-A3GK-01 3 49701229 49701229 G A BSN Missense_Mutation p.E3840K 0.26 possibly_damaging(0.899) TCGA-EK-A3GK-01 3 49723520 49723520 A G MST1 Silent p.R374R 0.35 TCGA-EK-A3GK-01 3 50131242 50131242 C G RBM5 Missense_Mutation p.I91M 0.39 tolerated(0.22) possibly_damaging(0.459) TCGA-EK-A3GK-01 3 50357191 50357191 C T HYAL2 Missense_Mutation p.E244K 0.40 deleterious(0.02) benign(0.206) TCGA-EK-A3GK-01 3 50614558 50614558 C G HEMK1 Missense_Mutation p.L164V 0.39 deleterious(0) probably_damaging(0.986) TCGA-EK-A3GK-01 3 51751678 51751678 C T GRM2 Missense_Mutation p.S797L 0.52 deleterious(0) possibly_damaging(0.882) TCGA-EK-A3GK-01 3 51967558 51967558 G T RRP9 Silent p.L464L 0.36 TCGA-EK-A3GK-01 3 52413996 52413996 G A DNAH1 Missense_Mutation p.D2485N 0.56 probably_damaging(0.998) TCGA-EK-A3GK-01 3 52467719 52467719 G A SEMA3G 3'UTR 0.23 TCGA-EK-A3GK-01 3 53262157 53262157 C G TKT Silent p.L504L 0.50 TCGA-EK-A3GK-01 3 56667358 56667358 G A FAM208A Missense_Mutation p.S1154L 0.45 tolerated(0.07) benign(0.006) TCGA-EK-A3GK-01 3 57443851 57443851 C A DNAH12 Nonsense_Mutation p.E987* 0.46 TCGA-EK-A3GK-01 3 57616535 57616535 C G DENND6A Missense_Mutation p.R475T 0.45 deleterious(0.01) benign(0.169) TCGA-EK-A3GK-01 3 58098016 58098016 C T FLNB Missense_Mutation p.H906Y 0.24 tolerated(1) benign(0.05) TCGA-EK-A3GK-01 3 58303748 58303748 C T RPP14 Silent p.F136F 0.24 TCGA-EK-A3GK-01 3 58508292 58508292 C G ACOX2 Silent p.L521L 0.34 TCGA-EK-A3GK-01 3 62267354 62267354 C T PTPRG Silent p.I1294I 0.79 TCGA-EK-A3GK-01 3 62739410 62739410 C G CADPS Missense_Mutation p.Q198H 0.45 tolerated(0.19) benign(0.216) TCGA-EK-A3GK-01 3 66433434 66433434 C G LRIG1 Missense_Mutation p.K821N 0.42 deleterious(0.02) benign(0.094) TCGA-EK-A3GK-01 3 68781569 68781569 G C FAM19A4 3'UTR 0.18 TCGA-EK-A3GK-01 3 69075149 69075149 G C TMF1 Missense_Mutation p.Q953E 0.15 tolerated(0.11) benign(0.042) TCGA-EK-A3GK-01 3 71748779 71748779 C G EIF4E3 Missense_Mutation p.E110D 0.35 tolerated(0.11) probably_damaging(0.964) TCGA-EK-A3GK-01 3 73112387 73112387 C T EBLN2 3'UTR 0.77 TCGA-EK-A3GK-01 3 86989789 86989789 C T VGLL3 3'UTR 0.50 TCGA-EK-A3GK-01 3 88192646 88192646 C G ZNF654 3'UTR 0.29 TCGA-EK-A3GK-01 3 93692591 93692591 C G PROS1 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-EK-A3GK-01 3 93782032 93782032 G A DHFRL1 5'UTR 0.16 TCGA-EK-A3GK-01 3 9475526 9475526 C T SETD5 Intron 0.32 TCGA-EK-A3GK-01 3 9476152 9476152 C T SETD5 Silent p.L104L 0.35 TCGA-EK-A3GK-01 4 104082602 104082602 C T CENPE Missense_Mutation p.D619N 0.24 probably_damaging(0.983) TCGA-EK-A3GK-01 4 104640512 104640512 G C TACR3 Missense_Mutation p.I107M 0.06 tolerated(0.17) possibly_damaging(0.883) TCGA-EK-A3GK-01 4 108955710 108955710 C T HADH 3'UTR 0.13 TCGA-EK-A3GK-01 4 110437681 110437681 C T SEC24B Intron 0.38 TCGA-EK-A3GK-01 4 110585445 110585445 G C CCDC109B Splice_Site p.X116_splice 0.31 TCGA-EK-A3GK-01 4 114278256 114278256 G C ANK2 Missense_Mutation p.D2828H 0.14 possibly_damaging(0.689) TCGA-EK-A3GK-01 4 114284588 114284588 G A ANK2 Silent p.L3617L 0.18 TCGA-EK-A3GK-01 4 120221707 120221707 C T C4orf3 Missense_Mutation p.R128Q 0.22 tolerated_low_confidence(0.05) benign(0.008) TCGA-EK-A3GK-01 4 121742343 121742343 G C PRDM5 Nonsense_Mutation p.S153* 0.42 TCGA-EK-A3GK-01 4 121966894 121966894 C G NDNF Missense_Mutation p.Q33H 0.25 deleterious(0.03) benign(0.297) TCGA-EK-A3GK-01 4 1222068 1222068 C G CTBP1 Missense_Mutation p.E87Q 0.47 tolerated(0.06) benign(0.215) TCGA-EK-A3GK-01 4 122853864 122853864 G A TRPC3 Silent p.I183I 0.35 TCGA-EK-A3GK-01 4 123160901 123160901 C T KIAA1109 Missense_Mutation p.S1355L 0.20 possibly_damaging(0.882) TCGA-EK-A3GK-01 4 123254926 123254926 G A KIAA1109 Missense_Mutation p.E3870K 0.27 probably_damaging(0.989) TCGA-EK-A3GK-01 4 128930140 128930140 G A C4orf29 Missense_Mutation p.G115E 0.27 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 4 143003309 143003309 G T INPP4B Missense_Mutation p.F839L 0.19 tolerated(0.29) benign(0.042) TCGA-EK-A3GK-01 4 147110796 147110796 G C LSM6 Missense_Mutation p.K77N 0.21 deleterious(0.05) benign(0.005) TCGA-EK-A3GK-01 4 151500783 151500783 G C LRBA Intron 0.42 TCGA-EK-A3GK-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.69 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 4 154260235 154260238 TTTG - TRIM2 3'UTR 0.38 TCGA-EK-A3GK-01 4 155254118 155254118 G A DCHS2 Missense_Mutation p.S582F 0.15 deleterious(0.03) possibly_damaging(0.458) TCGA-EK-A3GK-01 4 155505690 155505690 C G FGA Missense_Mutation p.E729D 0.37 deleterious(0) probably_damaging(0.994) TCGA-EK-A3GK-01 4 158073953 158073953 G A GLRB Missense_Mutation p.D330N 0.26 deleterious(0) possibly_damaging(0.82) TCGA-EK-A3GK-01 4 166231890 166231890 G C KLHL2 Missense_Mutation p.D413H 0.47 deleterious(0.01) probably_damaging(0.944) TCGA-EK-A3GK-01 4 169837137 169837137 C G PALLD Missense_Mutation p.L937V 0.38 tolerated(0.08) probably_damaging(0.969) TCGA-EK-A3GK-01 4 170913057 170913057 G A MFAP3L Silent p.I234I 0.23 TCGA-EK-A3GK-01 4 177136710 177136710 G C ASB5 3'UTR 0.38 TCGA-EK-A3GK-01 4 185138866 185138866 G C ENPP6 Nonsense_Mutation p.S36* 0.28 TCGA-EK-A3GK-01 4 185263061 185263061 C T RP11-290F5.2 RNA 0.37 TCGA-EK-A3GK-01 4 187527350 187527350 G A FAT1 Silent p.L3408L 0.28 TCGA-EK-A3GK-01 4 23830116 23830116 G A PPARGC1A Missense_Mutation p.H222Y 0.64 deleterious(0.02) possibly_damaging(0.474) TCGA-EK-A3GK-01 4 2701497 2701497 G A FAM193A Missense_Mutation p.D909N 0.57 tolerated(0.05) benign(0.049) TCGA-EK-A3GK-01 4 2877727 2877727 G C ADD1 Missense_Mutation p.D29H 0.69 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 4 2886385 2886385 C G ADD1 Missense_Mutation p.H168D 0.13 deleterious(0.01) probably_damaging(0.951) TCGA-EK-A3GK-01 4 37831583 37831583 C G PGM2 Intron 0.67 TCGA-EK-A3GK-01 4 48037979 48037979 G C NIPAL1 Silent p.L341L 0.82 TCGA-EK-A3GK-01 4 48996776 48996776 C G CWH43 Missense_Mutation p.L218V 0.66 tolerated(0.31) benign(0.195) TCGA-EK-A3GK-01 4 53611528 53611528 C T ERVMER34-1 Missense_Mutation p.E54K 0.18 tolerated_low_confidence(0.13) possibly_damaging(0.486) TCGA-EK-A3GK-01 4 54231379 54231379 G C SCFD2 Missense_Mutation p.Q244E 0.33 deleterious(0) benign(0.005) TCGA-EK-A3GK-01 4 54232241 54232241 G T SCFD2 5'UTR 0.26 TCGA-EK-A3GK-01 4 55143649 55143649 G C PDGFRA Missense_Mutation p.K627N 0.34 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 4 55595645 55595645 C T KIT Missense_Mutation p.S712F 0.23 tolerated(0.6) possibly_damaging(0.477) TCGA-EK-A3GK-01 4 56820461 56820461 C G CEP135 Silent p.L128L 0.22 TCGA-EK-A3GK-01 4 57344554 57344554 G A SRP72 Missense_Mutation p.E218K 0.25 deleterious(0.04) possibly_damaging(0.831) TCGA-EK-A3GK-01 4 57354143 57354143 G C SRP72 Missense_Mutation p.L396F 0.15 deleterious(0.04) probably_damaging(0.994) TCGA-EK-A3GK-01 4 57891674 57891674 C T POLR2B Silent p.L1070L 0.29 TCGA-EK-A3GK-01 4 62761478 62761478 G T LPHN3 Missense_Mutation p.D537Y 0.27 deleterious(0.04) possibly_damaging(0.616) TCGA-EK-A3GK-01 4 62845482 62845482 G A LPHN3 Missense_Mutation p.D935N 0.31 tolerated(0.11) probably_damaging(0.953) TCGA-EK-A3GK-01 4 68411144 68411144 G C CENPC 5'UTR 0.22 TCGA-EK-A3GK-01 4 6882621 6882621 G C KIAA0232 Missense_Mutation p.E1372D 0.73 tolerated_low_confidence(1) benign(0) TCGA-EK-A3GK-01 4 68925067 68925067 C T TMPRSS11F Missense_Mutation p.E379K 0.26 tolerated(0.41) benign(0.219) TCGA-EK-A3GK-01 4 70160416 70160416 G C UGT2B28 Silent p.V493V 0.21 TCGA-EK-A3GK-01 4 71659536 71659536 G C RUFY3 Missense_Mutation p.E458Q 0.25 tolerated(0.06) benign(0.024) TCGA-EK-A3GK-01 4 71697314 71697314 C T GRSF1 Missense_Mutation p.E298K 0.18 tolerated(0.36) benign(0.326) TCGA-EK-A3GK-01 4 72437578 72437578 C T SLC4A4 3'UTR 0.20 TCGA-EK-A3GK-01 4 73146781 73146781 G C ADAMTS3 3'UTR 0.24 TCGA-EK-A3GK-01 4 74282030 74282030 G A ALB Missense_Mutation p.E417K 0.22 deleterious(0.01) possibly_damaging(0.551) TCGA-EK-A3GK-01 4 74864334 74864334 C T CXCL5 5'UTR 0.29 TCGA-EK-A3GK-01 4 75858392 75858392 C G PARM1 5'UTR 0.40 TCGA-EK-A3GK-01 4 76529028 76529028 G C CDKL2 Silent p.L256L 0.21 TCGA-EK-A3GK-01 4 76842147 76842147 C G NAAA Missense_Mutation p.D266H 0.26 tolerated(0.12) possibly_damaging(0.56) TCGA-EK-A3GK-01 4 76911940 76911940 G C SDAD1 Missense_Mutation p.L19V 0.34 deleterious(0.02) benign(0.033) TCGA-EK-A3GK-01 4 77476856 77476856 G C SHROOM3 Missense_Mutation p.R88T 0.15 deleterious(0) possibly_damaging(0.812) TCGA-EK-A3GK-01 4 79443849 79443849 C T FRAS1 Silent p.F3565F 0.65 TCGA-EK-A3GK-01 4 81975019 81975019 G A BMP3 3'UTR 0.19 TCGA-EK-A3GK-01 4 81975220 81975220 G A BMP3 3'UTR 0.35 TCGA-EK-A3GK-01 4 83827476 83827476 G A THAP9 Splice_Site p.X93_splice 0.20 TCGA-EK-A3GK-01 4 83827621 83827621 G C THAP9 Missense_Mutation p.E141Q 0.15 tolerated(0.1) possibly_damaging(0.863) TCGA-EK-A3GK-01 4 83827747 83827747 G A THAP9 Missense_Mutation p.E183K 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-EK-A3GK-01 4 83846745 83846745 G A LIN54 3'UTR 0.19 TCGA-EK-A3GK-01 4 84350794 84350794 C T HELQ Missense_Mutation p.E801K 0.29 tolerated(0.14) benign(0.006) TCGA-EK-A3GK-01 4 84380912 84380912 C G MRPS18C Missense_Mutation p.S85C 0.18 deleterious(0.01) possibly_damaging(0.624) TCGA-EK-A3GK-01 4 8467278 8467278 C A TRMT44 Nonsense_Mutation p.S495* 0.83 TCGA-EK-A3GK-01 4 85664936 85664936 G C WDFY3 Missense_Mutation p.S1997C 0.17 deleterious(0.04) benign(0.068) TCGA-EK-A3GK-01 4 88258406 88258406 C T HSD17B11 3'UTR 0.24 TCGA-EK-A3GK-01 4 88767936 88767936 C G MEPE 3'UTR 0.31 TCGA-EK-A3GK-01 4 89052332 89052332 C G ABCG2 Missense_Mutation p.E138Q 0.19 deleterious(0.03) probably_damaging(0.989) TCGA-EK-A3GK-01 4 89425436 89425436 C T HERC5 Missense_Mutation p.A879V 0.62 tolerated(0.14) benign(0.017) TCGA-EK-A3GK-01 4 89425707 89425707 C G HERC5 Missense_Mutation p.A943G 0.29 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 4 89679920 89679920 C T FAM13A Missense_Mutation p.E571K 0.33 tolerated(0.07) benign(0.011) TCGA-EK-A3GK-01 4 89702330 89702330 G A FAM13A Nonsense_Mutation p.Q482* 0.31 TCGA-EK-A3GK-01 4 95255735 95255735 C T HPGDS Missense_Mutation p.E16K 0.16 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 4 99802064 99802064 G C EIF4E 3'UTR 0.51 TCGA-EK-A3GK-01 4 99802103 99802103 G C EIF4E 3'UTR 0.16 TCGA-EK-A3GK-01 5 1253720 1253720 C T TERT 3'UTR 0.15 TCGA-EK-A3GK-01 5 131326618 131326618 G C ACSL6 Missense_Mutation p.Q105E 0.32 tolerated(0.94) benign(0.001) TCGA-EK-A3GK-01 5 137524612 137524612 G C CDC23 3'UTR 0.90 TCGA-EK-A3GK-01 5 13868027 13868027 G A DNAH5 Silent p.H1303H 0.22 TCGA-EK-A3GK-01 5 140573239 140573239 G A PCDHB10 Missense_Mutation p.D372N 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EK-A3GK-01 5 140588436 140588436 G C PCDHB12 5'UTR 0.70 TCGA-EK-A3GK-01 5 140700262 140700262 G C TAF7 5'UTR 0.71 TCGA-EK-A3GK-01 5 140724207 140724207 G C PCDHGA3 Missense_Mutation p.E203Q 0.52 deleterious_low_confidence(0) probably_damaging(1) TCGA-EK-A3GK-01 5 145979889 145979889 G C PPP2R2B Missense_Mutation p.L312V 0.73 tolerated(0.35) benign(0.012) TCGA-EK-A3GK-01 5 14609093 14609093 G A FAM105A Silent p.L288L 0.16 TCGA-EK-A3GK-01 5 147781924 147781924 C T FBXO38 Missense_Mutation p.S147F 0.71 deleterious(0) benign(0.001) TCGA-EK-A3GK-01 5 153181983 153181983 G T GRIA1 Missense_Mutation p.G828V 0.64 tolerated(0.84) probably_damaging(0.912) TCGA-EK-A3GK-01 5 159776312 159776312 G C C1QTNF2 Missense_Mutation p.L286V 0.77 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 5 162887681 162887681 C T HMMR 5'UTR 0.77 TCGA-EK-A3GK-01 5 168114084 168114084 C T SLIT3 Missense_Mutation p.E1072K 0.70 deleterious(0.04) probably_damaging(0.998) TCGA-EK-A3GK-01 5 169310240 169310240 G C FAM196B Silent p.L221L 0.81 TCGA-EK-A3GK-01 5 172114998 172114998 G A NEURL1B 3'UTR 0.71 TCGA-EK-A3GK-01 5 175395007 175395007 G A THOC3 Missense_Mutation p.R69C 0.35 deleterious(0) possibly_damaging(0.896) TCGA-EK-A3GK-01 5 176047651 176047651 G A SNCB 3'UTR 0.75 TCGA-EK-A3GK-01 5 178030740 178030740 C T CLK4 Missense_Mutation p.D442N 0.79 tolerated(0.2) benign(0.076) TCGA-EK-A3GK-01 5 178506306 178506306 G A ZNF354C Silent p.L291L 0.84 TCGA-EK-A3GK-01 5 224575 224575 G A SDHA Missense_Mutation p.G84E 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-EK-A3GK-01 5 32712325 32712325 C T NPR3 Missense_Mutation p.S148L 0.27 tolerated(0.08) possibly_damaging(0.899) TCGA-EK-A3GK-01 5 34823849 34823849 G A RAI14 Missense_Mutation p.M637I 0.10 deleterious(0) benign(0.135) TCGA-EK-A3GK-01 5 35065310 35065310 C G PRLR Missense_Mutation p.E584Q 0.24 tolerated(1) benign(0.001) TCGA-EK-A3GK-01 5 37125461 37125461 C G C5orf42 Missense_Mutation p.R2894T 0.24 deleterious(0) possibly_damaging(0.798) TCGA-EK-A3GK-01 5 37224796 37224796 G C C5orf42 Missense_Mutation p.Q780E 0.25 deleterious(0.03) benign(0.324) TCGA-EK-A3GK-01 5 37310788 37310788 C G NUP155 Missense_Mutation p.E832Q 0.36 tolerated(0.1) possibly_damaging(0.733) TCGA-EK-A3GK-01 5 37331856 37331856 C A NUP155 Silent p.L520L 0.76 TCGA-EK-A3GK-01 5 37341221 37341221 G C NUP155 Nonsense_Mutation p.S406* 0.43 TCGA-EK-A3GK-01 5 38412643 38412643 G A EGFLAM Missense_Mutation p.E463K 0.26 tolerated(0.17) benign(0.072) TCGA-EK-A3GK-01 5 38427292 38427292 C G EGFLAM Missense_Mutation p.I664M 0.50 deleterious(0) probably_damaging(0.954) TCGA-EK-A3GK-01 5 38445648 38445648 C G EGFLAM Intron 0.14 TCGA-EK-A3GK-01 5 40945412 40945412 C A C7 Missense_Mutation p.S227Y 0.17 tolerated(0.12) possibly_damaging(0.828) TCGA-EK-A3GK-01 5 41176670 41176670 C G C6 Missense_Mutation p.D359H 0.25 deleterious(0) probably_damaging(0.987) TCGA-EK-A3GK-01 5 43290010 43290010 C G HMGCS1 3'UTR 0.39 TCGA-EK-A3GK-01 5 434222 434222 C T AHRR Missense_Mutation p.S478F 0.15 tolerated(0.7) benign(0.008) TCGA-EK-A3GK-01 5 43527498 43527498 C T PAIP1 Missense_Mutation p.E474K 0.26 deleterious(0) probably_damaging(0.975) TCGA-EK-A3GK-01 5 5239271 5239271 G A ADAMTS16 Missense_Mutation p.G721E 0.20 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 5 68417706 68417706 G A SLC30A5 Missense_Mutation p.M585I 0.55 tolerated(0.09) benign(0.043) TCGA-EK-A3GK-01 5 870591 870591 G A BRD9 Silent p.L508L 0.19 TCGA-EK-A3GK-01 5 9224790 9224790 G A SEMA5A Silent p.L214L 0.14 TCGA-EK-A3GK-01 6 10412326 10412326 G A TFAP2A Intron 0.29 TCGA-EK-A3GK-01 6 106557005 106557005 G A PRDM1 3'UTR 0.12 TCGA-EK-A3GK-01 6 107110891 107110891 G A QRSL1 Silent p.V399V 0.43 TCGA-EK-A3GK-01 6 107392134 107392134 C T BEND3 Silent p.R87R 0.31 TCGA-EK-A3GK-01 6 10796315 10796315 C G MAK Silent p.L353L 0.37 TCGA-EK-A3GK-01 6 10876194 10876194 C T GCM2 Missense_Mutation p.R171K 0.27 deleterious(0) probably_damaging(0.926) TCGA-EK-A3GK-01 6 110934169 110934169 C G CDK19 3'UTR 0.31 TCGA-EK-A3GK-01 6 111634580 111634580 C G REV3L Missense_Mutation p.R2860T 0.39 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 6 112671250 112671250 C G RFPL4B Missense_Mutation p.L114V 0.39 deleterious(0.01) benign(0.346) TCGA-EK-A3GK-01 6 116574332 116574332 G C TSPYL4 Missense_Mutation p.I280M 0.07 tolerated(0.05) benign(0.208) TCGA-EK-A3GK-01 6 116783191 116783191 C G FAM26F Missense_Mutation p.I33M 0.10 deleterious(0) benign(0.428) TCGA-EK-A3GK-01 6 117658469 117658469 G A ROS1 Missense_Mutation p.S1705L 0.38 deleterious(0.02) possibly_damaging(0.685) TCGA-EK-A3GK-01 6 12089440 12089440 G C HIVEP1 Missense_Mutation p.E22Q 0.65 tolerated(0.12) benign(0.01) TCGA-EK-A3GK-01 6 121770224 121770224 C G GJA1 3'UTR 0.23 TCGA-EK-A3GK-01 6 126081167 126081167 C T HEY2 3'UTR 0.45 TCGA-EK-A3GK-01 6 131203954 131203954 G A EPB41L2 Intron 0.38 TCGA-EK-A3GK-01 6 132207745 132207745 C T ENPP1 Missense_Mutation p.H830Y 0.43 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 6 137243566 137243566 G C SLC35D3 5'UTR 0.56 TCGA-EK-A3GK-01 6 138612946 138612946 C T KIAA1244 Nonsense_Mutation p.Q1042* 0.41 TCGA-EK-A3GK-01 6 143074992 143074992 C T HIVEP2 Missense_Mutation p.G2198D 0.34 tolerated(0.35) possibly_damaging(0.548) TCGA-EK-A3GK-01 6 143816982 143816982 C T FUCA2 Silent p.V422V 0.40 TCGA-EK-A3GK-01 6 144783982 144783982 C T UTRN Missense_Mutation p.L1016F 0.28 deleterious(0.05) benign(0.279) TCGA-EK-A3GK-01 6 147136293 147136293 G A ADGB Silent p.E1648E 0.30 TCGA-EK-A3GK-01 6 147635411 147635411 C T STXBP5 Silent p.I435I 0.57 TCGA-EK-A3GK-01 6 149983239 149983239 G A LATS1 Missense_Mutation p.H1007Y 0.50 deleterious(0) probably_damaging(0.991) TCGA-EK-A3GK-01 6 151673169 151673169 C T AKAP12 Missense_Mutation p.P1215S 0.39 tolerated(0.08) benign(0.362) TCGA-EK-A3GK-01 6 152737793 152737793 C T SYNE1 Missense_Mutation p.D1927N 0.38 probably_damaging(0.995) TCGA-EK-A3GK-01 6 152738138 152738138 C T SYNE1 Missense_Mutation p.E1812K 0.47 probably_damaging(0.937) TCGA-EK-A3GK-01 6 154412492 154412492 G T OPRM1 Missense_Mutation p.R443I 0.50 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 6 159191802 159191802 C T EZR Missense_Mutation p.E362K 0.37 tolerated(0.12) benign(0.008) TCGA-EK-A3GK-01 6 160466886 160466886 G C IGF2R Missense_Mutation p.E625D 0.25 tolerated(1) benign(0.006) TCGA-EK-A3GK-01 6 165746607 165746607 G A PDE10A Silent p.L759L 0.29 TCGA-EK-A3GK-01 6 166401262 166401262 C T LINC00473 RNA 0.58 TCGA-EK-A3GK-01 6 167570453 167570453 G A GPR31 Silent p.F289F 0.13 TCGA-EK-A3GK-01 6 168418648 168418648 C G KIF25 Intron 0.27 TCGA-EK-A3GK-01 6 168461549 168461549 C G FRMD1 Missense_Mutation p.E412Q 0.05 deleterious(0.02) probably_damaging(0.992) TCGA-EK-A3GK-01 6 170033055 170033055 G C WDR27 Missense_Mutation p.I737M 0.28 deleterious(0) probably_damaging(0.979) TCGA-EK-A3GK-01 6 170179281 170179281 C G ERMARD Missense_Mutation p.I581M 0.45 tolerated(0.15) benign(0.09) TCGA-EK-A3GK-01 6 20212631 20212631 G C MBOAT1 5'Flank 0.75 TCGA-EK-A3GK-01 6 20493562 20493562 C T E2F3 3'UTR 0.89 TCGA-EK-A3GK-01 6 24515501 24515501 C T ALDH5A1 Missense_Mutation p.S291F 0.29 deleterious(0) possibly_damaging(0.448) TCGA-EK-A3GK-01 6 25916060 25916060 C G SLC17A2 Missense_Mutation p.A323P 0.31 tolerated(0.06) benign(0.309) TCGA-EK-A3GK-01 6 26033628 26033628 C G HIST1H2AB Missense_Mutation p.E57Q 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EK-A3GK-01 6 26156742 26156742 G C HIST1H1E Missense_Mutation p.E42Q 0.86 deleterious(0.05) possibly_damaging(0.85) TCGA-EK-A3GK-01 6 26217697 26217697 G T HIST1H2AE 3'UTR 0.19 TCGA-EK-A3GK-01 6 26465472 26465472 C T BTN2A1 Silent p.L258L 0.22 TCGA-EK-A3GK-01 6 2785498 2785498 C T WRNIP1 Silent p.F660F 0.90 TCGA-EK-A3GK-01 6 28134412 28134412 C G ZNF192P1 RNA 0.47 TCGA-EK-A3GK-01 6 28254871 28254871 G A PGBD1 Missense_Mutation p.G190R 0.88 tolerated_low_confidence(0.55) benign(0.002) TCGA-EK-A3GK-01 6 28543779 28543779 C G SCAND3 Missense_Mutation p.E235Q 0.13 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-EK-A3GK-01 6 30314273 30314273 C G RPP21 Silent p.L110L 0.07 TCGA-EK-A3GK-01 6 30611382 30611382 G A ATAT1 Intron 0.33 TCGA-EK-A3GK-01 6 30917500 30917500 C G DPCR1 Missense_Mutation p.S420C 0.35 tolerated(0.06) unknown(0) TCGA-EK-A3GK-01 6 31513120 31513120 G A ATP6V1G2 3'UTR 0.26 TCGA-EK-A3GK-01 6 31541662 31541662 G C LTA 3'UTR 0.45 TCGA-EK-A3GK-01 6 3154970 3154970 G A TUBB2A Silent p.I155I 0.75 TCGA-EK-A3GK-01 6 31597075 31597075 G T PRRC2A Missense_Mutation p.Q640H 0.83 benign(0.216) TCGA-EK-A3GK-01 6 31598979 31598979 G C PRRC2A Missense_Mutation p.E843D 0.92 benign(0.217) TCGA-EK-A3GK-01 6 32163434 32163434 C T NOTCH4 Missense_Mutation p.R1931Q 0.34 tolerated_low_confidence(0.2) benign(0.002) TCGA-EK-A3GK-01 6 32713837 32713837 C T HLA-DQA2 Silent p.L201L 0.15 TCGA-EK-A3GK-01 6 33154583 33154583 C T COL11A2 Missense_Mutation p.E207K 0.82 possibly_damaging(0.492) TCGA-EK-A3GK-01 6 33171585 33171585 G C SLC39A7 Missense_Mutation p.E469Q 0.81 deleterious(0) probably_damaging(0.979) TCGA-EK-A3GK-01 6 33377548 33377548 C T KIFC1 3'UTR 0.83 TCGA-EK-A3GK-01 6 36462054 36462054 G C STK38 3'UTR 0.26 TCGA-EK-A3GK-01 6 37664614 37664614 G C MDGA1 5'UTR 0.39 TCGA-EK-A3GK-01 6 39512397 39512397 C G KIF6 Missense_Mutation p.E454Q 0.26 tolerated(0.32) benign(0.058) TCGA-EK-A3GK-01 6 39581039 39581039 G C KIF6 Missense_Mutation p.L189V 0.32 tolerated(0.21) benign(0.093) TCGA-EK-A3GK-01 6 42224486 42224486 C T TRERF1 Missense_Mutation p.E854K 0.35 deleterious(0.02) benign(0.292) TCGA-EK-A3GK-01 6 42979376 42979376 C T PPP2R5D 3'UTR 0.96 TCGA-EK-A3GK-01 6 43483773 43483773 C G YIPF3 Missense_Mutation p.E48Q 0.26 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-EK-A3GK-01 6 43484813 43484813 G C POLR1C 5'UTR 0.81 TCGA-EK-A3GK-01 6 43487119 43487119 G C POLR1C Missense_Mutation p.D64H 0.46 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 6 44216453 44216453 C G HSP90AB1 Missense_Mutation p.I29M 0.27 deleterious(0.01) probably_damaging(0.964) TCGA-EK-A3GK-01 6 46517945 46517945 G A CYP39A1 3'UTR 0.46 TCGA-EK-A3GK-01 6 46657139 46657139 G A TDRD6 Missense_Mutation p.G425E 0.80 deleterious(0) probably_damaging(0.978) TCGA-EK-A3GK-01 6 47645599 47645599 G A GPR111 Silent p.E99E 0.35 TCGA-EK-A3GK-01 6 49519061 49519061 G T C6orf141 Nonsense_Mutation p.E186* 0.79 TCGA-EK-A3GK-01 6 49976901 49976901 C G DEFB110 Missense_Mutation p.E47Q 0.24 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-EK-A3GK-01 6 50740508 50740508 G A TFAP2D Silent p.S430S 0.43 TCGA-EK-A3GK-01 6 53787584 53787584 C T LRRC1 Missense_Mutation p.S523F 0.18 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-EK-A3GK-01 6 55443818 55443818 G A HMGCLL1 Silent p.L12L 0.28 TCGA-EK-A3GK-01 6 57039137 57039137 C T BAG2 Intron 0.19 TCGA-EK-A3GK-01 6 64282609 64282609 G A PTP4A1 5'UTR 0.43 TCGA-EK-A3GK-01 6 64430725 64430725 C T EYS Missense_Mutation p.E3068K 0.28 deleterious(0.02) probably_damaging(0.938) TCGA-EK-A3GK-01 6 64431558 64431558 C G EYS Missense_Mutation p.R2790T 0.32 deleterious(0.02) probably_damaging(0.991) TCGA-EK-A3GK-01 6 72922844 72922844 C T RIMS1 Intron 0.44 TCGA-EK-A3GK-01 6 73933361 73933361 G A KHDC1L 3'UTR 0.33 TCGA-EK-A3GK-01 6 73933558 73933558 C T KHDC1L Silent p.L100L 0.24 TCGA-EK-A3GK-01 6 74228906 74228906 C G EEF1A1 Missense_Mutation p.E124Q 0.35 deleterious_low_confidence(0) benign(0.355) TCGA-EK-A3GK-01 6 74229171 74229171 G C EEF1A1 Missense_Mutation p.I71M 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EK-A3GK-01 6 74229671 74229671 G C EEF1A1 Missense_Mutation p.L27V 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.814) TCGA-EK-A3GK-01 6 7581463 7581463 G A DSP Silent p.L1680L 0.89 TCGA-EK-A3GK-01 6 75825740 75825740 G A COL12A1 Missense_Mutation p.S2518L 0.50 probably_damaging(0.909) TCGA-EK-A3GK-01 6 80196912 80196912 C G LCA5 Missense_Mutation p.D635H 0.75 deleterious(0) possibly_damaging(0.785) TCGA-EK-A3GK-01 6 8102777 8102777 G A EEF1E1 5'UTR 0.14 TCGA-EK-A3GK-01 6 83767592 83767592 C G UBE3D Missense_Mutation p.G76A 0.46 tolerated(0.06) probably_damaging(0.94) TCGA-EK-A3GK-01 6 83846971 83846971 C T DOPEY1 Silent p.L1070L 0.40 TCGA-EK-A3GK-01 6 88265183 88265183 C G RARS2 Missense_Mutation p.G113A 0.39 deleterious(0.01) probably_damaging(0.988) TCGA-EK-A3GK-01 6 90368487 90368487 C G MDN1 Missense_Mutation p.E4955Q 0.07 unknown(0) TCGA-EK-A3GK-01 6 90368571 90368571 C T MDN1 Missense_Mutation p.E4927K 0.06 unknown(0) TCGA-EK-A3GK-01 6 90382015 90382015 C T MDN1 Silent p.V4566V 0.38 TCGA-EK-A3GK-01 6 90577366 90577366 G A CASP8AP2 RNA 0.33 TCGA-EK-A3GK-01 6 90605031 90605031 C G GJA10 Missense_Mutation p.P282A 0.44 tolerated(0.51) benign(0.028) TCGA-EK-A3GK-01 6 97587196 97587196 C T KLHL32 3'UTR 0.36 TCGA-EK-A3GK-01 7 100028248 100028248 G A MEPCE Missense_Mutation p.E203K 0.88 deleterious(0) probably_damaging(0.993) TCGA-EK-A3GK-01 7 100485023 100485023 G A SRRT Silent p.Q686Q 0.42 TCGA-EK-A3GK-01 7 100686385 100686385 G C MUC17 Silent p.S3896S 0.18 TCGA-EK-A3GK-01 7 101813743 101813743 G A CUX1 Silent p.Q258Q 0.71 TCGA-EK-A3GK-01 7 104752965 104752965 C G KMT2E Missense_Mutation p.Q1588E 0.71 deleterious_low_confidence(0) benign(0.042) TCGA-EK-A3GK-01 7 105209661 105209661 G A EFCAB10 Silent p.F116F 0.56 TCGA-EK-A3GK-01 7 11521436 11521436 G C THSD7A Missense_Mutation p.L666V 0.40 deleterious(0.02) possibly_damaging(0.475) TCGA-EK-A3GK-01 7 122821030 122821030 C G SLC13A1 Missense_Mutation p.K75N 0.78 tolerated(0.17) benign(0.005) TCGA-EK-A3GK-01 7 127253524 127253524 G C PAX4 Missense_Mutation p.L201V 0.69 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 7 128141953 128141953 C T METTL2B Silent p.L374L 0.77 TCGA-EK-A3GK-01 7 128490064 128490064 C G FLNC Missense_Mutation p.S1745C 0.65 tolerated(0.14) benign(0) TCGA-EK-A3GK-01 7 132481277 132481277 C A CHCHD3 Nonsense_Mutation p.E196* 0.91 TCGA-EK-A3GK-01 7 140051183 140051183 C T SLC37A3 Missense_Mutation p.E258K 0.73 tolerated(0.09) benign(0.201) TCGA-EK-A3GK-01 7 142459659 142459659 G T PRSS1 Nonsense_Mutation p.E79* 0.39 TCGA-EK-A3GK-01 7 151860864 151860864 C T KMT2C Silent p.R3266R 0.54 TCGA-EK-A3GK-01 7 151877103 151877103 G C KMT2C Missense_Mutation p.L2420V 0.65 benign(0.094) TCGA-EK-A3GK-01 7 155534643 155534643 C G RBM33 Missense_Mutation p.S727C 0.67 deleterious(0) unknown(0) TCGA-EK-A3GK-01 7 157041173 157041173 G A UBE3C Missense_Mutation p.E865K 0.81 tolerated(0.17) possibly_damaging(0.493) TCGA-EK-A3GK-01 7 157041184 157041184 G C UBE3C Missense_Mutation p.K868N 0.81 deleterious(0.01) benign(0.038) TCGA-EK-A3GK-01 7 157061270 157061270 G C UBE3C 3'UTR 0.82 TCGA-EK-A3GK-01 7 158580781 158580781 G A ESYT2 Missense_Mutation p.H269Y 0.58 tolerated(0.08) benign(0.114) TCGA-EK-A3GK-01 7 1607367 1607367 C G PSMG3 Silent p.L112L 0.21 TCGA-EK-A3GK-01 7 16736606 16736606 C T BZW2 Silent p.L297L 0.27 TCGA-EK-A3GK-01 7 16737784 16737784 C T BZW2 Nonsense_Mutation p.Q361* 0.29 TCGA-EK-A3GK-01 7 1733669 1733669 C G AC074389.6 5'UTR 0.53 TCGA-EK-A3GK-01 7 21604003 21604003 C G DNAH11 Silent p.L394L 0.46 TCGA-EK-A3GK-01 7 22459403 22459403 C G STEAP1B 3'UTR 0.08 TCGA-EK-A3GK-01 7 29966065 29966065 C T SCRN1 Intron 0.41 TCGA-EK-A3GK-01 7 30721797 30721797 C T CRHR2 Intron 0.57 TCGA-EK-A3GK-01 7 33312684 33312684 C T BBS9 Nonsense_Mutation p.Q255* 0.41 TCGA-EK-A3GK-01 7 35674821 35674821 G A HERPUD2 Missense_Mutation p.L289F 0.55 tolerated(0.28) possibly_damaging(0.728) TCGA-EK-A3GK-01 7 37262231 37262231 C G ELMO1 Missense_Mutation p.E257Q 0.36 tolerated(0.49) possibly_damaging(0.51) TCGA-EK-A3GK-01 7 38431444 38431444 G A AMPH Nonsense_Mutation p.Q595* 0.35 TCGA-EK-A3GK-01 7 38500909 38500909 C G AMPH Missense_Mutation p.E331Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 7 39736381 39736381 G A RALA Missense_Mutation p.E141K 0.37 tolerated(0.12) possibly_damaging(0.654) TCGA-EK-A3GK-01 7 44056119 44056119 G A POLR2J4 RNA 0.27 TCGA-EK-A3GK-01 7 44079130 44079130 C T LINC00957 RNA 0.30 TCGA-EK-A3GK-01 7 44150469 44150469 C G AEBP1 Intron 0.38 TCGA-EK-A3GK-01 7 44150518 44150518 C T AEBP1 Missense_Mutation p.H498Y 0.30 tolerated(0.52) benign(0.007) TCGA-EK-A3GK-01 7 55238200 55238200 C G EGFR Intron 0.34 TCGA-EK-A3GK-01 7 56174064 56174064 G C CHCHD2 Missense_Mutation p.P15A 0.28 tolerated(0.06) unknown(0) TCGA-EK-A3GK-01 7 6068648 6068648 G A EIF2AK1 Missense_Mutation p.L450F 0.56 deleterious(0) possibly_damaging(0.805) TCGA-EK-A3GK-01 7 6200183 6200183 C T USP42 Intron 0.32 TCGA-EK-A3GK-01 7 6200189 6200189 C G USP42 3'UTR 0.26 TCGA-EK-A3GK-01 7 6200249 6200249 C G USP42 3'UTR 0.26 TCGA-EK-A3GK-01 7 6204918 6204918 C T CYTH3 Nonsense_Mutation p.W371* 0.34 TCGA-EK-A3GK-01 7 6204977 6204977 C T CYTH3 Missense_Mutation p.E352K 0.30 deleterious(0.04) benign(0.292) TCGA-EK-A3GK-01 7 63538876 63538876 G C ZNF727 Missense_Mutation p.K483N 0.54 tolerated(0.06) benign(0.01) TCGA-EK-A3GK-01 7 6487442 6487442 C T DAGLB Nonsense_Mutation p.W11* 0.49 TCGA-EK-A3GK-01 7 66774620 66774620 G A STAG3L4 RNA 0.25 TCGA-EK-A3GK-01 7 6859533 6859533 C A CCZ1B Missense_Mutation p.D188Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 7 70231180 70231180 C T AUTS2 Missense_Mutation p.P517S 0.14 tolerated(0.21) probably_damaging(0.999) TCGA-EK-A3GK-01 7 70257572 70257572 G T AUTS2 3'UTR 0.38 TCGA-EK-A3GK-01 7 71130461 71130461 G C WBSCR17 Missense_Mutation p.K382N 0.13 tolerated(0.18) benign(0.05) TCGA-EK-A3GK-01 7 73536523 73536523 C T LIMK1 3'UTR 0.72 TCGA-EK-A3GK-01 7 76254879 76254879 C T POMZP3 Missense_Mutation p.E63K 0.79 tolerated_low_confidence(0.06) unknown(0) TCGA-EK-A3GK-01 7 76255977 76255977 C G UPK3B Intron 0.68 TCGA-EK-A3GK-01 7 77584435 77584435 G A PHTF2 3'UTR 0.78 TCGA-EK-A3GK-01 7 81392151 81392151 G T HGF Missense_Mutation p.F42L 0.54 deleterious(0.01) possibly_damaging(0.601) TCGA-EK-A3GK-01 7 92242755 92242755 C A CDK6 3'UTR 0.38 TCGA-EK-A3GK-01 7 99780363 99780363 G C STAG3 Missense_Mutation p.K79N 0.57 tolerated(0.07) benign(0.239) TCGA-EK-A3GK-01 8 100108604 100108604 C G VPS13B Nonsense_Mutation p.S119* 0.27 TCGA-EK-A3GK-01 8 100711817 100711817 G C VPS13B Missense_Mutation p.Q2062H 0.35 deleterious(0) possibly_damaging(0.781) TCGA-EK-A3GK-01 8 10102637 10102637 G A MSRA Missense_Mutation p.E79K 0.49 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 8 101084453 101084453 G C RGS22 Silent p.L115L 0.24 TCGA-EK-A3GK-01 8 102504769 102504769 C T GRHL2 5'UTR 0.27 TCGA-EK-A3GK-01 8 103358595 103358595 C T UBR5 Missense_Mutation p.R202K 0.45 deleterious(0) possibly_damaging(0.762) TCGA-EK-A3GK-01 8 10466144 10466144 C T RP1L1 Missense_Mutation p.G1822S 0.39 unknown(0) TCGA-EK-A3GK-01 8 113277728 113277728 C A CSMD3 Missense_Mutation p.Q3200H 0.52 tolerated(0.17) probably_damaging(0.99) TCGA-EK-A3GK-01 8 113332155 113332155 C T CSMD3 Silent p.L2407L 0.18 TCGA-EK-A3GK-01 8 114186060 114186060 G C CSMD3 Missense_Mutation p.I200M 0.35 deleterious(0.02) benign(0.026) TCGA-EK-A3GK-01 8 11420556 11420556 G C BLK Missense_Mutation p.D417H 0.08 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 8 11695907 11695907 G C FDFT1 Missense_Mutation p.R348T 0.30 deleterious(0.02) benign(0.023) TCGA-EK-A3GK-01 8 118188627 118188627 C T SLC30A8 3'Flank 0.32 TCGA-EK-A3GK-01 8 125035755 125035755 C T FER1L6 Silent p.I735I 0.23 TCGA-EK-A3GK-01 8 125072540 125072540 C T FER1L6 Intron 0.22 TCGA-EK-A3GK-01 8 12886648 12886648 C G KIAA1456 3'UTR 0.47 TCGA-EK-A3GK-01 8 132002735 132002735 G T ADCY8 Silent p.I338I 0.33 TCGA-EK-A3GK-01 8 132002738 132002738 G A ADCY8 Silent p.F337F 0.25 TCGA-EK-A3GK-01 8 133848895 133848895 G T PHF20L1 Nonsense_Mutation p.E674* 0.20 TCGA-EK-A3GK-01 8 134146988 134146988 G A TG Missense_Mutation p.E2753K 0.21 deleterious_low_confidence(0.01) benign(0.114) TCGA-EK-A3GK-01 8 13425419 13425419 C G C8orf48 Missense_Mutation p.L307V 0.44 tolerated_low_confidence(0.15) possibly_damaging(0.899) TCGA-EK-A3GK-01 8 141525317 141525317 G C CHRAC1 Missense_Mutation p.E123Q 0.36 tolerated_low_confidence(0.25) unknown(0) TCGA-EK-A3GK-01 8 141566014 141566014 G T AGO2 Missense_Mutation p.S417Y 0.29 tolerated(0.09) benign(0.141) TCGA-EK-A3GK-01 8 141572715 141572715 G A AGO2 Silent p.L119L 0.26 TCGA-EK-A3GK-01 8 144358399 144358399 G A GLI4 Missense_Mutation p.E186K 0.08 tolerated(0.1) benign(0.04) TCGA-EK-A3GK-01 8 144358413 144358413 G C GLI4 Missense_Mutation p.K190N 0.07 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GK-01 8 144657003 144657003 G A NAPRT1 3'UTR 0.20 TCGA-EK-A3GK-01 8 144657091 144657091 G C NAPRT1 Intron 0.28 TCGA-EK-A3GK-01 8 144889724 144889724 C G SCRIB Missense_Mutation p.E726Q 0.26 benign(0.111) TCGA-EK-A3GK-01 8 144998486 144998486 C T PLEC Missense_Mutation p.E2008K 0.27 unknown(0) TCGA-EK-A3GK-01 8 145013711 145013711 G A PLEC Intron 0.44 TCGA-EK-A3GK-01 8 145024566 145024566 G A PLEC Silent p.P103P 0.25 TCGA-EK-A3GK-01 8 145024586 145024586 G C PLEC Missense_Mutation p.L97V 0.26 unknown(0) TCGA-EK-A3GK-01 8 145024638 145024638 G A PLEC Silent p.I79I 0.30 TCGA-EK-A3GK-01 8 145114648 145114648 G A OPLAH Missense_Mutation p.H73Y 0.29 tolerated(0.3) benign(0.002) TCGA-EK-A3GK-01 8 145163617 145163617 G T KIAA1875 Missense_Mutation p.M216I 0.30 deleterious(0.03) benign(0.006) TCGA-EK-A3GK-01 8 145164292 145164292 C T KIAA1875 Missense_Mutation p.S352L 0.24 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 8 145540701 145540701 G A DGAT1 Missense_Mutation p.S411L 0.29 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GK-01 8 145554638 145554638 G A SCRT1 3'UTR 0.26 TCGA-EK-A3GK-01 8 145622829 145622829 G A CPSF1 Missense_Mutation p.S753F 0.24 deleterious(0.02) benign(0.092) TCGA-EK-A3GK-01 8 145625597 145625597 G C CPSF1 Silent p.L300L 0.20 TCGA-EK-A3GK-01 8 145781002 145781002 C T ARHGAP39 Missense_Mutation p.E180K 0.05 tolerated(0.22) benign(0.138) TCGA-EK-A3GK-01 8 17813125 17813125 G A PCM1 Missense_Mutation p.E479K 0.47 deleterious(0.01) possibly_damaging(0.853) TCGA-EK-A3GK-01 8 17817611 17817611 C G PCM1 Nonsense_Mutation p.S710* 0.27 TCGA-EK-A3GK-01 8 17933080 17933080 C T ASAH1 Missense_Mutation p.R48K 0.42 tolerated(0.25) benign(0.03) TCGA-EK-A3GK-01 8 18385172 18385172 C T PSD3 3'UTR 0.42 TCGA-EK-A3GK-01 8 22460773 22460773 C T C8orf58 Missense_Mutation p.S351L 0.41 deleterious(0) benign(0.435) TCGA-EK-A3GK-01 8 22478839 22478839 C G BIN3 3'UTR 0.44 TCGA-EK-A3GK-01 8 23429092 23429092 C T SLC25A37 Silent p.L247L 0.47 TCGA-EK-A3GK-01 8 26366151 26366151 C A PNMA2 Nonsense_Mutation p.E41* 0.57 TCGA-EK-A3GK-01 8 26366723 26366723 C G PNMA2 5'UTR 0.24 TCGA-EK-A3GK-01 8 26435641 26435641 G T DPYSL2 5'UTR 0.47 TCGA-EK-A3GK-01 8 27151768 27151768 G A TRIM35 Silent p.F197F 0.52 TCGA-EK-A3GK-01 8 27168491 27168491 C T TRIM35 Missense_Mutation p.E88K 0.41 deleterious(0.05) benign(0.124) TCGA-EK-A3GK-01 8 28988056 28988056 G A KIF13B Silent p.L1023L 0.55 TCGA-EK-A3GK-01 8 30890108 30890108 C G PURG Missense_Mutation p.R64P 0.38 deleterious(0.04) probably_damaging(0.962) TCGA-EK-A3GK-01 8 3165225 3165225 C A CSMD1 Missense_Mutation p.K1314N 0.45 benign(0.236) TCGA-EK-A3GK-01 8 33354807 33354807 G A MAK16 Missense_Mutation p.D233N 0.38 deleterious(0.04) probably_damaging(0.991) TCGA-EK-A3GK-01 8 37730614 37730614 G A RAB11FIP1 Missense_Mutation p.S569F 0.24 deleterious(0.02) benign(0.027) TCGA-EK-A3GK-01 8 38205256 38205256 G A WHSC1L1 Missense_Mutation p.P145L 0.22 tolerated(0.14) benign(0.012) TCGA-EK-A3GK-01 8 41513233 41513233 G C ANK1 3'UTR 0.45 TCGA-EK-A3GK-01 8 42045454 42045454 C T PLAT Missense_Mutation p.E112K 0.28 tolerated(0.47) benign(0.024) TCGA-EK-A3GK-01 8 42780704 42780704 C A HOOK3 Missense_Mutation p.P50T 0.39 deleterious(0.01) benign(0.061) TCGA-EK-A3GK-01 8 42914232 42914232 C T FNTA Intron 0.35 TCGA-EK-A3GK-01 8 48740909 48740909 C G PRKDC Splice_Site p.X2799_splice 0.25 TCGA-EK-A3GK-01 8 54870854 54870854 G C RGS20 Missense_Mutation p.E335Q 0.33 deleterious(0.01) possibly_damaging(0.665) TCGA-EK-A3GK-01 8 56437971 56437971 G C XKR4 3'UTR 0.43 TCGA-EK-A3GK-01 8 57875796 57875796 C G IMPAD1 3'UTR 0.31 TCGA-EK-A3GK-01 8 59405044 59405044 G A CYP7A1 Silent p.L361L 0.37 TCGA-EK-A3GK-01 8 64125042 64125042 C G YTHDF3 3'UTR 0.27 TCGA-EK-A3GK-01 8 66617086 66617086 C T MTFR1 Missense_Mutation p.L147F 0.40 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 8 74868231 74868231 C T TCEB1 Silent p.L21L 0.42 TCGA-EK-A3GK-01 8 77754902 77754902 G A ZFHX4 Missense_Mutation p.E1136K 0.36 possibly_damaging(0.486) TCGA-EK-A3GK-01 8 81553430 81553430 G A ZNF704 3'UTR 0.45 TCGA-EK-A3GK-01 8 81883062 81883062 G A PAG1 3'UTR 0.49 TCGA-EK-A3GK-01 8 89180138 89180138 C G MMP16 Missense_Mutation p.D157H 0.37 tolerated(0.1) probably_damaging(0.979) TCGA-EK-A3GK-01 8 91804021 91804021 G A NECAB1 5'UTR 0.40 TCGA-EK-A3GK-01 8 92053031 92053031 G A TMEM55A 5'UTR 0.13 TCGA-EK-A3GK-01 8 95164299 95164299 G C CDH17 Missense_Mutation p.F531L 0.10 deleterious(0.03) benign(0.02) TCGA-EK-A3GK-01 8 95539477 95539477 G A KIAA1429 Missense_Mutation p.S332L 0.31 tolerated(0.63) possibly_damaging(0.714) TCGA-EK-A3GK-01 8 9605588 9605588 G T TNKS Missense_Mutation p.D900Y 0.67 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 8 97622976 97622976 C A SDC2 3'UTR 0.39 TCGA-EK-A3GK-01 8 98288632 98288632 G T TSPYL5 3'UTR 0.22 TCGA-EK-A3GK-01 8 98711993 98711993 G A MTDH Missense_Mutation p.E354K 0.21 deleterious(0.01) possibly_damaging(0.542) TCGA-EK-A3GK-01 9 100000946 100000946 G C CCDC180 Intron 0.36 TCGA-EK-A3GK-01 9 100133042 100133042 G A CCDC180 Missense_Mutation p.M1534I 0.27 tolerated(0.54) benign(0) TCGA-EK-A3GK-01 9 104187295 104187295 C T ALDOB Missense_Mutation p.E277K 0.53 deleterious(0.03) probably_damaging(1) TCGA-EK-A3GK-01 9 104499576 104499576 G A GRIN3A Missense_Mutation p.P229L 0.24 deleterious(0.02) possibly_damaging(0.575) TCGA-EK-A3GK-01 9 107267221 107267221 G C OR13F1 Silent p.L226L 0.17 TCGA-EK-A3GK-01 9 108270984 108270984 C G FSD1L Missense_Mutation p.L295V 0.40 tolerated(0.05) probably_damaging(0.996) TCGA-EK-A3GK-01 9 108510422 108510422 C G TMEM38B Nonsense_Mutation p.S204* 0.20 TCGA-EK-A3GK-01 9 110068756 110068756 C T RAD23B Nonsense_Mutation p.Q109* 0.12 TCGA-EK-A3GK-01 9 114688771 114688771 G C UGCG Missense_Mutation p.E185Q 0.25 deleterious(0) possibly_damaging(0.812) TCGA-EK-A3GK-01 9 115232804 115232804 C G HSDL2 Missense_Mutation p.Q413E 0.12 tolerated(0.22) benign(0.022) TCGA-EK-A3GK-01 9 117170230 117170230 G A DFNB31 Silent p.S565S 0.43 TCGA-EK-A3GK-01 9 117848146 117848146 C A TNC Nonsense_Mutation p.E622* 0.39 TCGA-EK-A3GK-01 9 117848473 117848473 C A TNC Missense_Mutation p.D513Y 0.56 deleterious(0) probably_damaging(0.943) TCGA-EK-A3GK-01 9 121929662 121929662 C G BRINP1 Silent p.L662L 0.21 TCGA-EK-A3GK-01 9 123619106 123619106 G C PHF19 3'UTR 0.28 TCGA-EK-A3GK-01 9 124073024 124073024 C G GSN Silent p.L189L 0.22 TCGA-EK-A3GK-01 9 125748668 125748668 C T RABGAP1 Missense_Mutation p.S187L 0.25 tolerated(0.59) benign(0.419) TCGA-EK-A3GK-01 9 126132855 126132855 G C CRB2 Missense_Mutation p.R508T 0.26 tolerated(0.56) possibly_damaging(0.537) TCGA-EK-A3GK-01 9 128200913 128200913 C G MAPKAP1 3'UTR 0.32 TCGA-EK-A3GK-01 9 129644561 129644561 C T ZBTB34 3'UTR 0.42 TCGA-EK-A3GK-01 9 130117612 130117612 G C GARNL3 Missense_Mutation p.R599T 0.44 tolerated(0.44) benign(0.006) TCGA-EK-A3GK-01 9 130155399 130155399 G A GARNL3 Missense_Mutation p.E970K 0.54 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-EK-A3GK-01 9 130166349 130166349 G A SLC2A8 Intron 0.41 TCGA-EK-A3GK-01 9 130829080 130829080 C A NAIF1 Nonsense_Mutation p.E101* 0.39 TCGA-EK-A3GK-01 9 130928435 130928435 G C CIZ1 3'UTR 0.36 TCGA-EK-A3GK-01 9 131586155 131586155 G A C9orf114 Silent p.F311F 0.37 TCGA-EK-A3GK-01 9 132665165 132665165 C G FNBP1 Missense_Mutation p.E471Q 0.42 deleterious(0) benign(0.418) TCGA-EK-A3GK-01 9 133962880 133962880 G A LAMC3 Silent p.L1416L 0.62 TCGA-EK-A3GK-01 9 134351139 134351139 G A PRRC2B Missense_Mutation p.R1208Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-EK-A3GK-01 9 135205299 135205299 G C SETX Silent p.L562L 0.48 TCGA-EK-A3GK-01 9 135553529 135553529 G A GTF3C4 Missense_Mutation p.D175N 0.26 tolerated(0.07) probably_damaging(0.997) TCGA-EK-A3GK-01 9 135781123 135781123 C A TSC1 Missense_Mutation p.K614N 0.47 deleterious(0.01) probably_damaging(0.992) TCGA-EK-A3GK-01 9 136577743 136577743 G A SARDH Silent p.I442I 0.27 TCGA-EK-A3GK-01 9 136918692 136918692 C T BRD3 5'UTR 0.15 TCGA-EK-A3GK-01 9 139413262 139413262 C T NOTCH1 Missense_Mutation p.E294K 0.43 tolerated(0.07) possibly_damaging(0.608) TCGA-EK-A3GK-01 9 139690910 139690910 C G CCDC183 Missense_Mutation p.Q21E 0.43 tolerated(0.29) benign(0.007) TCGA-EK-A3GK-01 9 139735063 139735063 C T RABL6 3'UTR 0.51 TCGA-EK-A3GK-01 9 139838386 139838386 G A FBXW5 Silent p.F50F 0.40 TCGA-EK-A3GK-01 9 140086993 140086993 C G TPRN Missense_Mutation p.E626Q 0.42 tolerated(0.19) benign(0.196) TCGA-EK-A3GK-01 9 140176641 140176641 C G TOR4A 3'UTR 0.43 TCGA-EK-A3GK-01 9 140201369 140201369 C G EXD3 3'UTR 0.07 TCGA-EK-A3GK-01 9 140611105 140611105 C T EHMT1 Missense_Mutation p.S38L 0.52 tolerated_low_confidence(0.22) benign(0.002) TCGA-EK-A3GK-01 9 18639298 18639298 C G ADAMTSL1 Silent p.L241L 0.54 TCGA-EK-A3GK-01 9 20764941 20764941 G T FOCAD Nonsense_Mutation p.E190* 0.42 TCGA-EK-A3GK-01 9 2104063 2104063 G C SMARCA2 Missense_Mutation p.L1062F 0.36 possibly_damaging(0.587) TCGA-EK-A3GK-01 9 21334600 21334600 C G KLHL9 Missense_Mutation p.E87Q 0.50 deleterious(0) probably_damaging(0.997) TCGA-EK-A3GK-01 9 2643666 2643666 G C VLDLR Missense_Mutation p.D287H 0.42 deleterious(0.01) probably_damaging(0.956) TCGA-EK-A3GK-01 9 32633691 32633691 G C TAF1L Missense_Mutation p.I629M 0.44 tolerated(1) benign(0.026) TCGA-EK-A3GK-01 9 33347041 33347041 C G NFX1 Missense_Mutation p.H784D 0.35 deleterious(0) probably_damaging(0.937) TCGA-EK-A3GK-01 9 33996307 33996307 G C UBAP2 Missense_Mutation p.Q68E 0.43 deleterious(0) possibly_damaging(0.904) TCGA-EK-A3GK-01 9 34725732 34725732 G C FAM205A Missense_Mutation p.S502C 0.42 tolerated(0.15) probably_damaging(0.993) TCGA-EK-A3GK-01 9 35042891 35042891 G A C9orf131 Missense_Mutation p.D89N 0.48 tolerated(0.09) possibly_damaging(0.856) TCGA-EK-A3GK-01 9 35108750 35108751 CA T FAM214B 5'UTR 0.32 TCGA-EK-A3GK-01 9 45728185 45728185 C G FAM27A 3'UTR 0.17 TCGA-EK-A3GK-01 9 6007599 6007599 C T KIAA2026 Missense_Mutation p.M63I 0.44 tolerated_low_confidence(0.26) benign(0.001) TCGA-EK-A3GK-01 9 67793799 67793799 G C FAM27B Intron 0.29 TCGA-EK-A3GK-01 9 70871863 70871863 G A CBWD3 Missense_Mutation p.D153N 0.15 deleterious(0.01) possibly_damaging(0.873) TCGA-EK-A3GK-01 9 71098826 71098826 G A PGM5 Missense_Mutation p.M447I 0.41 tolerated(0.15) benign(0.091) TCGA-EK-A3GK-01 9 73398937 73398937 G C TRPM3 Intron 0.38 TCGA-EK-A3GK-01 9 74810440 74810440 C G GDA Missense_Mutation p.Q50E 0.19 tolerated(0.37) benign(0) TCGA-EK-A3GK-01 9 77376684 77376684 G A TRPM6 Silent p.V1571V 0.36 TCGA-EK-A3GK-01 9 79320263 79320263 G C PRUNE2 Silent p.L2309L 0.33 TCGA-EK-A3GK-01 9 79322089 79322089 C G PRUNE2 Missense_Mutation p.E1701Q 0.42 deleterious(0) possibly_damaging(0.545) TCGA-EK-A3GK-01 9 79825580 79825580 C G VPS13A Missense_Mutation p.L182V 0.47 deleterious(0.02) benign(0.082) TCGA-EK-A3GK-01 9 88960659 88960659 G A ZCCHC6 Silent p.L248L 0.40 TCGA-EK-A3GK-01 9 90500620 90500620 C T SPATA31E1 Silent p.F406F 0.26 TCGA-EK-A3GK-01 9 92020383 92020383 G A SEMA4D 5'UTR 0.33 TCGA-EK-A3GK-01 9 95608443 95608443 C G ZNF484 3'UTR 0.48 TCGA-EK-A3GK-01 9 990438 990438 C T DMRT3 Silent p.V284V 0.40 TCGA-EK-A3GK-01 9 99525475 99525475 C G ZNF510 Missense_Mutation p.E93Q 0.60 deleterious(0.05) benign(0.243) TCGA-EK-A3GK-01 X 100077239 100077239 G C CSTF2 Splice_Site p.X46_splice 0.45 TCGA-EK-A3GK-01 X 100878842 100878842 G A ARMCX3 5'UTR 0.38 TCGA-EK-A3GK-01 X 100910949 100910949 C T ARMCX2 Silent p.L542L 0.44 TCGA-EK-A3GK-01 X 102863560 102863560 G A TCEAL3 5'UTR 0.55 TCGA-EK-A3GK-01 X 10535234 10535234 G C MID1 Silent p.L118L 0.28 TCGA-EK-A3GK-01 X 106486974 106486974 G C PIH1D3 3'UTR 0.12 TCGA-EK-A3GK-01 X 107225195 107225195 C A TEX13B Nonsense_Mutation p.E55* 0.47 TCGA-EK-A3GK-01 X 107911727 107911727 G A COL4A5 Silent p.G1261G 0.26 TCGA-EK-A3GK-01 X 107979074 107979074 G A IRS4 Silent p.L167L 0.45 TCGA-EK-A3GK-01 X 108781313 108781313 G C NXT2 Missense_Mutation p.E74Q 0.35 deleterious(0.02) possibly_damaging(0.795) TCGA-EK-A3GK-01 X 108785781 108785781 G T NXT2 Missense_Mutation p.G153V 0.54 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 X 108886914 108886914 C G ACSL4 3'UTR 0.19 TCGA-EK-A3GK-01 X 109924798 109924798 G A CHRDL1 Silent p.F356F 0.22 TCGA-EK-A3GK-01 X 11156998 11156998 G A ARHGAP6 Silent p.P970P 0.28 TCGA-EK-A3GK-01 X 114141786 114141786 C G HTR2C Silent p.V395V 0.43 TCGA-EK-A3GK-01 X 114251854 114251854 G C IL13RA2 5'UTR 0.40 TCGA-EK-A3GK-01 X 118222063 118222063 T G KIAA1210 Missense_Mutation p.T1044P 0.57 tolerated(0.14) possibly_damaging(0.607) TCGA-EK-A3GK-01 X 118699296 118699296 G C CXorf56 Nonsense_Mutation p.S8* 0.38 TCGA-EK-A3GK-01 X 119760175 119760175 G A C1GALT1C1 Missense_Mutation p.P283S 0.38 tolerated(0.08) benign(0.248) TCGA-EK-A3GK-01 X 120182171 120182171 G A GLUD2 Silent p.K211K 0.37 TCGA-EK-A3GK-01 X 122778431 122778431 G C THOC2 Missense_Mutation p.I552M 0.39 deleterious(0) benign(0.19) TCGA-EK-A3GK-01 X 128722897 128722897 C G OCRL Silent p.L792L 0.22 TCGA-EK-A3GK-01 X 129139210 129139210 G A BCORL1 Translation_Start_Site p.M1? 0.37 unknown(0) TCGA-EK-A3GK-01 X 12937373 12937373 G C TLR8 Missense_Mutation p.D72H 0.15 tolerated(0.55) benign(0.076) TCGA-EK-A3GK-01 X 130219941 130219941 C T ARHGAP36 Missense_Mutation p.L387F 0.35 deleterious(0) possibly_damaging(0.698) TCGA-EK-A3GK-01 X 130223202 130223202 C G ARHGAP36 3'UTR 0.33 TCGA-EK-A3GK-01 X 130409550 130409550 G C IGSF1 Missense_Mutation p.S1034C 0.28 deleterious(0) probably_damaging(0.967) TCGA-EK-A3GK-01 X 132887620 132887620 C G GPC3 Silent p.V307V 0.34 TCGA-EK-A3GK-01 X 133700283 133700283 C A PLAC1 Nonsense_Mutation p.E144* 0.19 TCGA-EK-A3GK-01 X 133923621 133923621 G C FAM122B Missense_Mutation p.Q75E 0.15 deleterious(0.02) benign(0.034) TCGA-EK-A3GK-01 X 133931210 133931210 C T FAM122B 5'Flank 0.27 TCGA-EK-A3GK-01 X 134292169 134292169 G C CT55 Missense_Mutation p.I164M 0.16 tolerated(0.3) benign(0.144) TCGA-EK-A3GK-01 X 135488008 135488008 G A GPR112 Missense_Mutation p.D2938N 0.35 tolerated(0.11) probably_damaging(0.946) TCGA-EK-A3GK-01 X 147014007 147014007 C G FMR1 Missense_Mutation p.L232V 0.29 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GK-01 X 148037884 148037884 C A AFF2 Missense_Mutation p.S770Y 0.17 deleterious(0.03) benign(0.378) TCGA-EK-A3GK-01 X 148798579 148798579 G C MAGEA11 3'UTR 0.35 TCGA-EK-A3GK-01 X 151818973 151818973 C T GABRQ Silent p.V277V 0.33 TCGA-EK-A3GK-01 X 152482028 152482028 G T MAGEA1 3'UTR 0.23 TCGA-EK-A3GK-01 X 152806980 152806980 C G ATP2B3 Silent p.L124L 0.25 TCGA-EK-A3GK-01 X 152954237 152954237 G T SLC6A8 Missense_Mutation p.V70L 0.30 deleterious(0) possibly_damaging(0.831) TCGA-EK-A3GK-01 X 152967515 152967515 C T BCAP31 Missense_Mutation p.E284K 0.18 tolerated(0.1) benign(0.367) TCGA-EK-A3GK-01 X 153049643 153049643 G C SRPK3 Missense_Mutation p.E374D 0.39 tolerated(0.24) benign(0.217) TCGA-EK-A3GK-01 X 153051683 153051683 G A IDH3G Missense_Mutation p.S355F 0.17 deleterious(0.01) probably_damaging(0.932) TCGA-EK-A3GK-01 X 153186187 153186187 C A ARHGAP4 Nonsense_Mutation p.E192* 0.20 TCGA-EK-A3GK-01 X 153213143 153213143 G C HCFC1 3'UTR 0.25 TCGA-EK-A3GK-01 X 153214724 153214724 G C HCFC1 3'UTR 0.27 TCGA-EK-A3GK-01 X 153282449 153282449 G A IRAK1 Nonsense_Mutation p.Q327* 0.24 TCGA-EK-A3GK-01 X 153533428 153533428 G C TKTL1 Intron 0.08 TCGA-EK-A3GK-01 X 153590069 153590069 G A FLNA Silent p.L971L 0.18 TCGA-EK-A3GK-01 X 153631423 153631423 C T DNASE1L1 Missense_Mutation p.D212N 0.14 deleterious(0.02) probably_damaging(0.969) TCGA-EK-A3GK-01 X 153665568 153665568 G A GDI1 5'UTR 0.25 TCGA-EK-A3GK-01 X 153696205 153696205 G A PLXNA3 Silent p.G1227G 0.31 TCGA-EK-A3GK-01 X 154115559 154115559 G C F8A1 Missense_Mutation p.D304H 0.12 deleterious(0.01) probably_damaging(0.934) TCGA-EK-A3GK-01 X 155252871 155252871 C T WASH6P RNA 0.09 TCGA-EK-A3GK-01 X 20194605 20194605 C G RPS6KA3 Missense_Mutation p.D316H 0.05 deleterious(0.04) possibly_damaging(0.812) TCGA-EK-A3GK-01 X 209749 209749 C T PLCXD1 Silent p.I199I 0.10 TCGA-EK-A3GK-01 X 23398156 23398156 T A PTCHD1 Missense_Mutation p.V267E 0.44 deleterious(0.01) possibly_damaging(0.767) TCGA-EK-A3GK-01 X 30254171 30254171 C G MAGEB3 Missense_Mutation p.L44V 0.30 tolerated(0.7) benign(0.038) TCGA-EK-A3GK-01 X 30260591 30260591 G A MAGEB4 Silent p.T113T 0.38 TCGA-EK-A3GK-01 X 31139870 31139870 C T DMD 3'UTR 0.21 TCGA-EK-A3GK-01 X 37027435 37027435 C T FAM47C Missense_Mutation p.L318F 0.24 tolerated(0.07) benign(0.342) TCGA-EK-A3GK-01 X 38135962 38135962 C T TM4SF2 Intron 0.38 TCGA-EK-A3GK-01 X 38665433 38665433 C T MID1IP1 3'UTR 0.58 TCGA-EK-A3GK-01 X 39933798 39933798 G A BCOR Silent p.L267L 0.22 TCGA-EK-A3GK-01 X 41586262 41586262 C G GPR82 5'UTR 0.55 TCGA-EK-A3GK-01 X 44928921 44928921 C A KDM6A Missense_Mutation p.S674Y 0.32 deleterious_low_confidence(0) benign(0.139) TCGA-EK-A3GK-01 X 44928929 44928929 C T KDM6A Nonsense_Mutation p.Q677* 0.29 TCGA-EK-A3GK-01 X 44929242 44929242 C A KDM6A Missense_Mutation p.S781Y 0.22 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EK-A3GK-01 X 44929322 44929322 C T KDM6A Missense_Mutation p.H808Y 0.26 deleterious(0.04) benign(0.281) TCGA-EK-A3GK-01 X 44929341 44929341 C T KDM6A Missense_Mutation p.S814F 0.24 deleterious(0.04) benign(0.008) TCGA-EK-A3GK-01 X 44929353 44929353 C T KDM6A Missense_Mutation p.S818L 0.27 tolerated(0.07) benign(0.018) TCGA-EK-A3GK-01 X 44929362 44929362 C G KDM6A Nonsense_Mutation p.S821* 0.31 TCGA-EK-A3GK-01 X 47038524 47038524 G A RBM10 Missense_Mutation p.R229H 0.38 deleterious(0) possibly_damaging(0.491) TCGA-EK-A3GK-01 X 47272077 47272077 G C ZNF157 Missense_Mutation p.R202T 0.35 deleterious(0.01) benign(0.111) TCGA-EK-A3GK-01 X 47272385 47272385 G T ZNF157 Missense_Mutation p.G305W 0.17 deleterious(0.01) possibly_damaging(0.898) TCGA-EK-A3GK-01 X 48325234 48325234 G A SLC38A5 Silent p.L91L 0.24 TCGA-EK-A3GK-01 X 48458939 48458939 C T WDR13 Silent p.I252I 0.06 TCGA-EK-A3GK-01 X 48826642 48826642 G A KCND1 Missense_Mutation p.R13W 0.25 deleterious(0) probably_damaging(1) TCGA-EK-A3GK-01 X 48922603 48922603 C G CCDC120 Nonsense_Mutation p.S219* 0.48 TCGA-EK-A3GK-01 X 49072855 49072855 C T CACNA1F Missense_Mutation p.E1086K 0.31 deleterious(0) benign(0.026) TCGA-EK-A3GK-01 X 49957942 49957942 C T AKAP4 Missense_Mutation p.M474I 0.16 tolerated(0.38) benign(0.238) TCGA-EK-A3GK-01 X 49958260 49958260 C G AKAP4 Missense_Mutation p.K368N 0.35 deleterious(0) probably_damaging(0.968) TCGA-EK-A3GK-01 X 50213452 50213452 C T DGKK RNA 0.44 TCGA-EK-A3GK-01 X 53253979 53253979 G A KDM5C Silent p.I31I 0.38 TCGA-EK-A3GK-01 X 53254168 53254168 G A KDM5C 5'UTR 0.59 TCGA-EK-A3GK-01 X 54011586 54011586 G A PHF8 Missense_Mutation p.S771L 0.33 tolerated(0.14) benign(0.004) TCGA-EK-A3GK-01 X 54497876 54497876 C T FGD1 Missense_Mutation p.D118N 0.49 deleterious_low_confidence(0) benign(0.097) TCGA-EK-A3GK-01 X 55514414 55514414 G A USP51 Missense_Mutation p.S320F 0.39 tolerated(0.36) benign(0) TCGA-EK-A3GK-01 X 55650925 55650925 G A FOXR2 Missense_Mutation p.D261N 0.35 tolerated(0.11) benign(0.012) TCGA-EK-A3GK-01 X 64958439 64958439 G A MSN Missense_Mutation p.R435Q 0.32 tolerated(0.13) benign(0.045) TCGA-EK-A3GK-01 X 65418829 65418829 C T HEPH Missense_Mutation p.S662L 0.40 tolerated(0.09) benign(0.001) TCGA-EK-A3GK-01 X 66863102 66863102 G C AR Missense_Mutation p.E541Q 0.38 deleterious(0.02) possibly_damaging(0.514) TCGA-EK-A3GK-01 X 6995411 6995411 G A HDHD1 Silent p.F143F 0.29 TCGA-EK-A3GK-01 X 70316571 70316571 G A FOXO4 Missense_Mutation p.E65K 0.44 tolerated(0.14) benign(0.031) TCGA-EK-A3GK-01 X 70503475 70503475 C T NONO 5'UTR 0.33 TCGA-EK-A3GK-01 X 70514066 70514066 C G NONO Intron 0.30 TCGA-EK-A3GK-01 X 70517280 70517280 G T NONO Nonsense_Mutation p.E333* 0.69 TCGA-EK-A3GK-01 X 70521661 70521661 C G ITGB1BP2 Missense_Mutation p.S2C 0.41 deleterious(0) probably_damaging(0.995) TCGA-EK-A3GK-01 X 70521760 70521760 G T ITGB1BP2 Intron 0.39 TCGA-EK-A3GK-01 X 70613181 70613181 G A TAF1 Missense_Mutation p.D1048N 0.41 deleterious(0.01) probably_damaging(0.933) TCGA-EK-A3GK-01 X 73063292 73063292 C T XIST RNA 0.27 TCGA-EK-A3GK-01 X 73064429 73064429 C T XIST RNA 0.27 TCGA-EK-A3GK-01 X 75649011 75649011 G A MAGEE1 Missense_Mutation p.E230K 0.33 tolerated_low_confidence(0.06) benign(0.358) TCGA-EK-A3GK-01 X 79698858 79698858 G T FAM46D Nonsense_Mutation p.E274* 0.27 TCGA-EK-A3GK-01 X 85118040 85118040 G A CHM 3'UTR 0.30 TCGA-EK-A3GK-01 X 86772994 86772994 G A KLHL4 Missense_Mutation p.G33E 0.50 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EK-A3GK-01 X 89176954 89176954 C T TGIF2LX 5'Flank 0.27 TCGA-EK-A3GK-01 X 92927910 92927910 G C NAP1L3 Missense_Mutation p.L132V 0.40 deleterious(0) probably_damaging(0.987) TCGA-EK-A3GM-01 10 11502657 11502657 A T USP6NL 3'UTR 0.25 TCGA-EK-A3GM-01 10 123238709 123238710 - A FGFR2 3'Flank 0.28 TCGA-EK-A3GM-01 10 48388541 48388541 C T RBP3 Silent p.V779V 0.26 TCGA-EK-A3GM-01 10 49951299 49951299 G A WDFY4 Missense_Mutation p.G722E 0.42 tolerated(0.17) probably_damaging(0.964) TCGA-EK-A3GM-01 10 51224824 51224824 C T AGAP8 3'UTR 0.17 TCGA-EK-A3GM-01 10 53458331 53458331 G A CSTF2T Nonsense_Mutation p.R327* 0.39 TCGA-EK-A3GM-01 10 5963484 5963484 C T FBXO18 Silent p.A809A 0.25 TCGA-EK-A3GM-01 10 68979606 68979606 C T CTNNA3 Missense_Mutation p.R201K 0.26 tolerated(0.22) benign(0.22) TCGA-EK-A3GM-01 10 70405425 70405425 C T TET1 Missense_Mutation p.S980L 0.25 tolerated(0.36) benign(0.024) TCGA-EK-A3GM-01 10 73556744 73556744 C G CDH23 Intron 0.33 TCGA-EK-A3GM-01 10 73558160 73558160 C G CDH23 Missense_Mutation p.F53L 0.18 deleterious(0) possibly_damaging(0.709) TCGA-EK-A3GM-01 11 108380989 108380989 G C EXPH5 Missense_Mutation p.Q1749E 0.35 deleterious(0.05) benign(0.022) TCGA-EK-A3GM-01 11 110030027 110030027 C T ZC3H12C Silent p.F320F 0.21 TCGA-EK-A3GM-01 11 112064657 112064657 C T BCO2 Silent p.L191L 0.21 TCGA-EK-A3GM-01 11 113105875 113105875 C T NCAM1 Missense_Mutation p.T654M 0.47 deleterious(0.01) probably_damaging(1) TCGA-EK-A3GM-01 11 124739926 124739926 G A ROBO3 Missense_Mutation p.G243E 0.20 deleterious(0) probably_damaging(1) TCGA-EK-A3GM-01 11 134151280 134151280 G A GLB1L3 Silent p.P124P 0.17 TCGA-EK-A3GM-01 11 134153651 134153651 G A GLB1L3 Missense_Mutation p.R183Q 0.53 tolerated(0.26) benign(0.001) TCGA-EK-A3GM-01 11 17633864 17633864 C T OTOG Silent p.L2105L 0.37 TCGA-EK-A3GM-01 11 19197442 19197442 G T ZDHHC13 Missense_Mutation p.D602Y 0.35 deleterious(0) probably_damaging(1) TCGA-EK-A3GM-01 11 47609937 47609937 G A FAM180B Missense_Mutation p.R209Q 0.46 tolerated(1) benign(0) TCGA-EK-A3GM-01 11 57101942 57101942 C T SSRP1 Missense_Mutation p.E79K 0.43 deleterious(0.01) probably_damaging(0.93) TCGA-EK-A3GM-01 11 58477169 58477169 T G GLYAT 3'UTR 0.44 TCGA-EK-A3GM-01 11 58973243 58973243 G A DTX4 3'UTR 0.28 TCGA-EK-A3GM-01 11 62558226 62558226 G A TMEM223 Missense_Mutation p.R160W 0.35 deleterious(0) probably_damaging(1) TCGA-EK-A3GM-01 11 66995615 66995615 G C KDM2A Missense_Mutation p.Q355H 0.21 tolerated(0.07) possibly_damaging(0.677) TCGA-EK-A3GM-01 11 66999107 66999107 G C KDM2A Missense_Mutation p.L385F 0.38 tolerated(0.35) benign(0.002) TCGA-EK-A3GM-01 11 7531307 7531307 G A OLFML1 Missense_Mutation p.R366K 0.46 tolerated(0.66) benign(0.023) TCGA-EK-A3GM-01 11 76868334 76868334 G A MYO7A Missense_Mutation p.E249K 0.33 deleterious(0) possibly_damaging(0.447) TCGA-EK-A3GM-01 11 78177032 78177032 C G NARS2 Missense_Mutation p.E352Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GM-01 11 9749720 9749720 C T SWAP70 Missense_Mutation p.L255F 0.30 tolerated(0.71) benign(0.003) TCGA-EK-A3GM-01 12 1022548 1022548 G C RAD52 3'UTR 0.22 TCGA-EK-A3GM-01 12 106457747 106457747 G C NUAK1 3'UTR 0.15 TCGA-EK-A3GM-01 12 111886854 111886854 G C SH2B3 3'UTR 0.18 TCGA-EK-A3GM-01 12 123956991 123956991 G A RILPL1 3'UTR 0.30 TCGA-EK-A3GM-01 12 21531188 21531188 G A IAPP Missense_Mutation p.R33Q 0.16 deleterious(0.03) probably_damaging(0.976) TCGA-EK-A3GM-01 12 24048783 24048783 G C SOX5 Missense_Mutation p.L72V 0.28 tolerated_low_confidence(0.34) benign(0.001) TCGA-EK-A3GM-01 12 53670904 53670904 C G ESPL1 Missense_Mutation p.L660V 0.27 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GM-01 12 56481622 56481622 T A ERBB3 Missense_Mutation p.F219L 0.31 deleterious(0.01) probably_damaging(1) TCGA-EK-A3GM-01 12 56755762 56755762 G A APOF Silent p.F76F 0.26 TCGA-EK-A3GM-01 12 6993274 6993274 C T RPL13P5 RNA 0.26 TCGA-EK-A3GM-01 12 7947780 7947780 C T NANOG 3'UTR 0.13 TCGA-EK-A3GM-01 12 79693241 79693241 C T SYT1 Silent p.I240I 0.20 TCGA-EK-A3GM-01 12 8377332 8377332 G A FAM90A1 Missense_Mutation p.P33S 0.14 deleterious(0) probably_damaging(0.909) TCGA-EK-A3GM-01 12 94543449 94543449 C T PLXNC1 Silent p.F234F 0.31 TCGA-EK-A3GM-01 13 25672292 25672292 C T PABPC3 3'UTR 0.30 TCGA-EK-A3GM-01 13 28196021 28196021 C G POLR1D 5'UTR 0.24 TCGA-EK-A3GM-01 13 28196057 28196057 C G POLR1D 5'UTR 0.23 TCGA-EK-A3GM-01 13 39613751 39613751 C T NHLRC3 Silent p.F96F 0.34 TCGA-EK-A3GM-01 13 52515301 52515301 C T ATP7B Missense_Mutation p.G1158S 0.16 deleterious(0.01) probably_damaging(1) TCGA-EK-A3GM-01 13 52971859 52971859 C T THSD1 Missense_Mutation p.E177K 0.28 tolerated(0.24) benign(0.011) TCGA-EK-A3GM-01 14 102493819 102493819 G A DYNC1H1 Missense_Mutation p.E2996K 0.45 probably_damaging(0.994) TCGA-EK-A3GM-01 14 102901414 102901414 G A TECPR2 Missense_Mutation p.E754K 0.38 deleterious(0) benign(0.371) TCGA-EK-A3GM-01 14 103808178 103808178 G A EIF5 3'UTR 0.43 TCGA-EK-A3GM-01 14 105239823 105239823 G A AKT1 Missense_Mutation p.S266L 0.09 deleterious(0.05) possibly_damaging(0.766) TCGA-EK-A3GM-01 14 105965292 105965292 C T C14orf80 3'UTR 0.21 TCGA-EK-A3GM-01 14 38277976 38277976 C T TTC6 Silent p.I1498I 0.32 TCGA-EK-A3GM-01 14 64686090 64686090 G A SYNE2 Missense_Mutation p.D6608N 0.52 benign(0.015) TCGA-EK-A3GM-01 14 64971731 64971731 G A ZBTB25 5'Flank 0.50 TCGA-EK-A3GM-01 14 91804434 91804434 G A CCDC88C Missense_Mutation p.A322V 0.40 deleterious(0) probably_damaging(0.986) TCGA-EK-A3GM-01 15 101464779 101464779 C T LRRK1 5'UTR 0.21 TCGA-EK-A3GM-01 15 34080589 34080589 G A RYR3 Missense_Mutation p.E3254K 0.17 benign(0.088) TCGA-EK-A3GM-01 15 35086946 35086946 C T ACTC1 Missense_Mutation p.G22S 0.27 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-EK-A3GM-01 15 41773387 41773387 C T RTF1 3'UTR 0.23 TCGA-EK-A3GM-01 15 42853584 42853584 G A HAUS2 Missense_Mutation p.E125K 0.17 tolerated(0.05) probably_damaging(0.983) TCGA-EK-A3GM-01 15 52485878 52485878 G C MYO5C 3'UTR 0.25 TCGA-EK-A3GM-01 15 56726478 56726478 C G MNS1 Missense_Mutation p.R376T 0.20 deleterious(0) probably_damaging(0.932) TCGA-EK-A3GM-01 15 66793822 66793822 C G RPL4 Missense_Mutation p.M189I 0.24 tolerated(0.85) benign(0.005) TCGA-EK-A3GM-01 15 69714019 69714019 C T KIF23 Missense_Mutation p.H82Y 0.14 tolerated(0.22) benign(0.002) TCGA-EK-A3GM-01 15 80847445 80847445 G A ARNT2 Missense_Mutation p.E377K 0.16 deleterious(0) benign(0.033) TCGA-EK-A3GM-01 15 82575267 82575267 C T FAM154B Missense_Mutation p.S354F 0.27 deleterious(0.02) possibly_damaging(0.866) TCGA-EK-A3GM-01 15 85165835 85165835 C T ZSCAN2 3'UTR 0.25 TCGA-EK-A3GM-01 15 89828324 89828324 C T FANCI Intron 0.18 TCGA-EK-A3GM-01 16 11571799 11571799 G A CTD-3088G3.8 Silent p.T774T 0.33 TCGA-EK-A3GM-01 16 14015888 14015888 G A ERCC4 Missense_Mutation p.E70K 0.16 tolerated(0.11) probably_damaging(0.936) TCGA-EK-A3GM-01 16 22296211 22296211 C T EEF2K 3'UTR 0.23 TCGA-EK-A3GM-01 16 24805874 24805874 C G TNRC6A Missense_Mutation p.S1121C 0.36 deleterious(0.02) probably_damaging(0.956) TCGA-EK-A3GM-01 16 27561137 27561137 C G GTF3C1 Missense_Mutation p.W25C 0.39 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GM-01 16 28843580 28843580 C A ATXN2L Nonsense_Mutation p.S459* 0.24 TCGA-EK-A3GM-01 16 30041965 30041965 G C FAM57B 5'UTR 0.30 TCGA-EK-A3GM-01 16 4506663 4506663 C T DNAJA3 3'UTR 0.32 TCGA-EK-A3GM-01 16 4854320 4854320 G A GLYR1 3'UTR 0.44 TCGA-EK-A3GM-01 16 711352 711352 C G WDR90 Missense_Mutation p.S1175C 0.24 deleterious(0) probably_damaging(0.998) TCGA-EK-A3GM-01 17 26904594 26904594 C T SPAG5 3'UTR 0.18 TCGA-EK-A3GM-01 17 3564221 3564221 C G CTNS 3'UTR 0.38 TCGA-EK-A3GM-01 17 37866671 37866671 G C ERBB2 Missense_Mutation p.E280Q 0.52 tolerated(1) benign(0.052) TCGA-EK-A3GM-01 17 39994305 39994305 G A KLHL10 Missense_Mutation p.V41M 0.21 deleterious(0.02) probably_damaging(0.98) TCGA-EK-A3GM-01 17 40353804 40353804 G A STAT5B Silent p.L772L 0.20 TCGA-EK-A3GM-01 17 40732386 40732386 C T FAM134C 3'UTR 0.13 TCGA-EK-A3GM-01 17 41219655 41219655 C T BRCA1 Missense_Mutation p.E1703K 0.10 deleterious(0.04) benign(0.023) TCGA-EK-A3GM-01 17 42153576 42153576 C G G6PC3 3'UTR 0.25 TCGA-EK-A3GM-01 17 57917917 57917917 A G VMP1 3'UTR 0.26 TCGA-EK-A3GM-01 17 64876774 64876774 G A CACNG5 Silent p.T128T 0.20 TCGA-EK-A3GM-01 17 72842272 72842272 G A GRIN2C Silent p.I761I 0.13 TCGA-EK-A3GM-01 17 80014956 80014956 G T GPS1 Nonsense_Mutation p.E513* 0.43 TCGA-EK-A3GM-01 17 80059738 80059738 G A FASN 5'Flank 0.27 TCGA-EK-A3GM-01 18 47101933 47101933 G A LIPG Missense_Mutation p.D256N 0.30 tolerated(0.28) benign(0.365) TCGA-EK-A3GM-01 19 18724918 18724918 C T TMEM59L Silent p.C107C 0.27 TCGA-EK-A3GM-01 19 33706703 33706703 C T SLC7A10 Missense_Mutation p.V110I 0.22 tolerated(1) benign(0.314) TCGA-EK-A3GM-01 19 35557160 35557160 C T HPN Missense_Mutation p.S408F 0.18 deleterious(0.02) benign(0.013) TCGA-EK-A3GM-01 19 3591754 3591754 T A GIPC3 3'UTR 0.23 TCGA-EK-A3GM-01 19 38742017 38742017 G T PPP1R14A Missense_Mutation p.P129T 0.26 tolerated(0.45) possibly_damaging(0.506) TCGA-EK-A3GM-01 19 40580980 40580980 G A ZNF780A Missense_Mutation p.H458Y 0.17 tolerated(1) possibly_damaging(0.589) TCGA-EK-A3GM-01 19 42460880 42460880 C T RABAC1 3'UTR 0.25 TCGA-EK-A3GM-01 19 44117613 44117613 G C SRRM5 Missense_Mutation p.R447T 0.11 deleterious(0.03) probably_damaging(0.943) TCGA-EK-A3GM-01 19 44117971 44117971 G C SRRM5 Missense_Mutation p.E566D 0.24 tolerated(0.3) benign(0.006) TCGA-EK-A3GM-01 19 44118135 44118135 G A SRRM5 Missense_Mutation p.R621K 0.15 tolerated(0.13) probably_damaging(0.915) TCGA-EK-A3GM-01 19 46287424 46287424 G A DMWD 3'UTR 0.16 TCGA-EK-A3GM-01 19 50249909 50249909 C T TSKS Nonsense_Mutation p.W270* 0.16 TCGA-EK-A3GM-01 19 50249926 50249926 C T TSKS Missense_Mutation p.E265K 0.19 tolerated(0.2) possibly_damaging(0.547) TCGA-EK-A3GM-01 19 54104546 54104546 C T CTB-167G5.5 Missense_Mutation p.A96T 0.24 tolerated(0.12) benign(0.423) TCGA-EK-A3GM-01 19 54515263 54515263 G A CACNG6 Silent p.Q201Q 0.16 TCGA-EK-A3GM-01 19 55294399 55294399 G A KIR2DL1 Silent p.L247L 0.19 TCGA-EK-A3GM-01 19 56490823 56490823 C A NLRP8 Missense_Mutation p.N980K 0.12 deleterious(0.01) possibly_damaging(0.888) TCGA-EK-A3GM-01 19 56953204 56953204 C T ZNF667 Missense_Mutation p.R387K 0.15 tolerated(0.94) benign(0.001) TCGA-EK-A3GM-01 19 577916 577916 C G BSG Silent p.L70L 0.30 TCGA-EK-A3GM-01 19 579513 579513 C T BSG Silent p.F143F 0.42 TCGA-EK-A3GM-01 19 579536 579536 C G BSG Missense_Mutation p.S151C 0.37 deleterious(0.04) probably_damaging(0.975) TCGA-EK-A3GM-01 19 58101681 58101681 C T ZIK1 Missense_Mutation p.R168C 0.22 tolerated(0.05) benign(0) TCGA-EK-A3GM-01 19 58420041 58420041 G C ZNF417 Silent p.L535L 0.08 TCGA-EK-A3GM-01 19 58772826 58772829 TGAA - ZNF544 Frame_Shift_Del p.E287Rfs*192 0.15 TCGA-EK-A3GM-01 19 58864179 58864179 G C A1BG Intron 0.13 TCGA-EK-A3GM-01 19 8162221 8162221 C T FBN3 Missense_Mutation p.E1747K 0.34 deleterious(0.01) possibly_damaging(0.481) TCGA-EK-A3GM-01 1 1454334 1454334 G A ATAD3A Missense_Mutation p.E208K 0.29 deleterious(0) probably_damaging(0.925) TCGA-EK-A3GM-01 1 145441827 145441827 G A TXNIP 3'UTR 0.25 TCGA-EK-A3GM-01 1 145475563 145475563 G A ANKRD34A 3'UTR 0.29 TCGA-EK-A3GM-01 1 154229643 154229643 C T UBAP2L Silent p.S754S 0.12 TCGA-EK-A3GM-01 1 154516899 154516899 G A TDRD10 Missense_Mutation p.E235K 0.26 deleterious(0.05) probably_damaging(0.966) TCGA-EK-A3GM-01 1 155932919 155932919 G A ARHGEF2 Silent p.L260L 0.20 TCGA-EK-A3GM-01 1 157776889 157776889 C A FCRL1 Intron 0.23 TCGA-EK-A3GM-01 1 168665667 168665667 C T DPT 3'UTR 0.23 TCGA-EK-A3GM-01 1 169764008 169764008 C T METTL18 5'UTR 0.29 TCGA-EK-A3GM-01 1 181701977 181701977 C T CACNA1E Missense_Mutation p.R919W 0.20 deleterious(0) possibly_damaging(0.689) TCGA-EK-A3GM-01 1 185976331 185976331 G A HMCN1 Missense_Mutation p.R1516Q 0.31 probably_damaging(0.995) TCGA-EK-A3GM-01 1 190423875 190423875 G A BRINP3 Missense_Mutation p.S49F 0.28 deleterious(0) benign(0.017) TCGA-EK-A3GM-01 1 203668790 203668790 C T ATP2B4 Silent p.L198L 0.20 TCGA-EK-A3GM-01 1 203713119 203713119 G A ATP2B4 3'UTR 0.26 TCGA-EK-A3GM-01 1 204840154 204840154 G T NFASC Intron 0.21 TCGA-EK-A3GM-01 1 212900254 212900254 C A NSL1 3'UTR 0.24 TCGA-EK-A3GM-01 1 223987747 223987747 C T TP53BP2 Missense_Mutation p.D447N 0.26 tolerated(0.38) benign(0.146) TCGA-EK-A3GM-01 1 228345525 228345525 C T GJC2 Silent p.F22F 0.25 TCGA-EK-A3GM-01 1 232944093 232944093 C A MAP10 3'UTR 0.17 TCGA-EK-A3GM-01 1 25254089 25254089 G A RUNX3 Missense_Mutation p.R153C 0.35 deleterious(0.03) probably_damaging(1) TCGA-EK-A3GM-01 1 27057981 27057982 - CAACC ARID1A Frame_Shift_Ins p.Q566Nfs*55 0.43 TCGA-EK-A3GM-01 1 28595719 28595719 G A SESN2 Missense_Mutation p.R39Q 0.36 tolerated_low_confidence(0.21) benign(0.001) TCGA-EK-A3GM-01 1 3102760 3102760 G A PRDM16 Missense_Mutation p.E37K 0.45 deleterious_low_confidence(0.01) benign(0.109) TCGA-EK-A3GM-01 1 40735693 40735693 C T ZMPSTE24 Missense_Mutation p.T174I 0.10 deleterious(0.02) benign(0.042) TCGA-EK-A3GM-01 1 41481881 41481881 C T SLFNL1 Missense_Mutation p.G374D 0.36 tolerated(0.33) possibly_damaging(0.575) TCGA-EK-A3GM-01 1 6313808 6313808 G T GPR153 Silent p.I252I 0.33 TCGA-EK-A3GM-01 1 6315019 6315019 C T GPR153 5'UTR 0.50 TCGA-EK-A3GM-01 1 85510918 85510918 G C MCOLN3 Silent p.L42L 0.42 TCGA-EK-A3GM-01 1 85510984 85510984 G A MCOLN3 Silent p.C20C 0.43 TCGA-EK-A3GM-01 1 87598335 87598336 - C RP5-1052I5.2 Intron 0.36 TCGA-EK-A3GM-01 1 90401301 90401301 G C LRRC8D 3'UTR 0.22 TCGA-EK-A3GM-01 1 90401324 90401324 G C LRRC8D 3'UTR 0.20 TCGA-EK-A3GM-01 1 90401423 90401423 G A LRRC8D 3'UTR 0.32 TCGA-EK-A3GM-01 20 30309776 30309776 G C BCL2L1 Silent p.P82P 0.16 TCGA-EK-A3GM-01 20 34505430 34505430 C G PHF20 Missense_Mutation p.S617C 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-EK-A3GM-01 20 3765875 3765889 TCTTCCTCCTCCTCT - CENPB In_Frame_Del p.E415_E419del 0.17 TCGA-EK-A3GM-01 20 40045902 40045902 C T CHD6 Missense_Mutation p.R2072Q 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-EK-A3GM-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.22 deleterious(0.01) probably_damaging(1) TCGA-EK-A3GM-01 20 60854321 60854321 C T OSBPL2 Silent p.I200I 0.36 TCGA-EK-A3GM-01 20 62632587 62632587 G A PRPF6 Missense_Mutation p.R394Q 0.14 deleterious(0.02) benign(0.317) TCGA-EK-A3GM-01 21 11097629 11097629 A C BAGE2 RNA 0.04 TCGA-EK-A3GM-01 21 32492634 32492634 G A TIAM1 3'UTR 0.33 TCGA-EK-A3GM-01 21 32638893 32638893 G A TIAM1 Silent p.S132S 0.18 TCGA-EK-A3GM-01 21 37617534 37617534 G A DOPEY2 Missense_Mutation p.E1086K 0.29 tolerated(0.16) benign(0.288) TCGA-EK-A3GM-01 21 38519790 38519790 G C TTC3 Missense_Mutation p.E635Q 0.23 deleterious(0.03) possibly_damaging(0.905) TCGA-EK-A3GM-01 21 43411540 43411540 C T ZBTB21 Missense_Mutation p.E889K 0.31 deleterious(0.02) benign(0.309) TCGA-EK-A3GM-01 21 45758160 45758160 C T C21orf2 Intron 0.23 TCGA-EK-A3GM-01 22 21982539 21982539 C T YDJC 3'UTR 0.21 TCGA-EK-A3GM-01 22 22053840 22053840 C G YPEL1 3'UTR 0.27 TCGA-EK-A3GM-01 22 32015688 32015688 G A PISD Silent p.I346I 0.27 TCGA-EK-A3GM-01 22 38119410 38119410 C T TRIOBP Nonsense_Mutation p.R283* 0.29 TCGA-EK-A3GM-01 22 38611400 38611400 G A MAFF 3'UTR 0.15 TCGA-EK-A3GM-01 22 42776812 42776812 G C NFAM1 3'UTR 0.54 TCGA-EK-A3GM-01 2 141643716 141643716 C T LRP1B Missense_Mutation p.E1319K 0.22 benign(0.292) TCGA-EK-A3GM-01 2 152321064 152321064 G C RIF1 Missense_Mutation p.R1677T 0.34 tolerated(0.11) possibly_damaging(0.829) TCGA-EK-A3GM-01 2 163128822 163128822 C G IFIH1 Missense_Mutation p.E844Q 0.16 deleterious(0) probably_damaging(0.992) TCGA-EK-A3GM-01 2 165772440 165772440 T C SLC38A11 Missense_Mutation p.I165V 0.32 tolerated(0.35) benign(0.012) TCGA-EK-A3GM-01 2 165945751 165945751 C G SCN3A 3'UTR 0.36 TCGA-EK-A3GM-01 2 165945799 165945799 G C SCN3A 3'UTR 0.41 TCGA-EK-A3GM-01 2 171262054 171262054 G A MYO3B Splice_Site p.X811_splice 0.17 TCGA-EK-A3GM-01 2 179432618 179432618 C T TTN Missense_Mutation p.E26081K 0.19 TCGA-EK-A3GM-01 2 215645934 215645934 C A BARD1 Missense_Mutation p.A222S 0.20 tolerated(0.64) benign(0.01) TCGA-EK-A3GM-01 2 222290696 222290696 G A EPHA4 3'UTR 0.17 TCGA-EK-A3GM-01 2 230933508 230933508 G A SLC16A14 5'UTR 0.14 TCGA-EK-A3GM-01 2 237489318 237489318 C T ACKR3 Silent p.I70I 0.24 TCGA-EK-A3GM-01 2 23785231 23785231 G A KLHL29 Silent p.P55P 0.43 TCGA-EK-A3GM-01 2 242801048 242801048 G A PDCD1 5'UTR 0.18 TCGA-EK-A3GM-01 2 27715111 27715111 C T FNDC4 3'UTR 0.23 TCGA-EK-A3GM-01 2 29234362 29234362 C G FAM179A Missense_Mutation p.S291C 0.26 deleterious(0) probably_damaging(0.935) TCGA-EK-A3GM-01 2 54871601 54871601 G A SPTBN1 Missense_Mutation p.E1383K 0.21 tolerated(0.08) probably_damaging(0.966) TCGA-EK-A3GM-01 2 97847353 97847353 C G ANKRD36 Missense_Mutation p.P585R 0.23 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-EK-A3GM-01 3 113023888 113023888 G A WDR52 Missense_Mutation p.H1624Y 0.10 deleterious(0.04) probably_damaging(0.991) TCGA-EK-A3GM-01 3 126071330 126071330 C T KLF15 Missense_Mutation p.E146K 0.30 deleterious(0) probably_damaging(0.987) TCGA-EK-A3GM-01 3 171377057 171377057 A T PLD1 Missense_Mutation p.V792D 0.26 tolerated(0.28) possibly_damaging(0.557) TCGA-EK-A3GM-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.30 deleterious(0.04) probably_damaging(0.96) TCGA-EK-A3GM-01 3 181431959 181431959 C A SOX2 3'UTR 0.28 TCGA-EK-A3GM-01 3 183209823 183209823 C T KLHL6 Silent p.L586L 0.20 TCGA-EK-A3GM-01 3 185866909 185866909 C T DGKG 3'UTR 0.26 TCGA-EK-A3GM-01 3 194947453 194947453 G A XXYLT1 Nonsense_Mutation p.Q213* 0.10 TCGA-EK-A3GM-01 3 195453054 195453054 G A MUC20 Missense_Mutation p.R527K 0.40 tolerated(0.93) unknown(0) TCGA-EK-A3GM-01 3 195506492 195506492 C A MUC4 Missense_Mutation p.V3987F 0.33 probably_damaging(0.975) TCGA-EK-A3GM-01 3 195506647 195506647 G A MUC4 Missense_Mutation p.T3935I 0.22 possibly_damaging(0.908) TCGA-EK-A3GM-01 3 195511036 195511036 G A MUC4 Missense_Mutation p.S2472L 0.10 unknown(0) TCGA-EK-A3GM-01 3 195511058 195511058 G C MUC4 Missense_Mutation p.L2465V 0.10 unknown(0) TCGA-EK-A3GM-01 3 195511276 195511276 G A MUC4 Missense_Mutation p.S2392L 0.07 unknown(0) TCGA-EK-A3GM-01 3 195512428 195512428 G C MUC4 Nonsense_Mutation p.S2008* 0.10 TCGA-EK-A3GM-01 3 195512716 195512716 G A MUC4 Missense_Mutation p.S1912L 0.09 unknown(0) TCGA-EK-A3GM-01 3 195517250 195517250 C T MUC4 Missense_Mutation p.D401N 0.17 unknown(0) TCGA-EK-A3GM-01 3 30648064 30648064 C T TGFBR2 5'Flank 0.20 TCGA-EK-A3GM-01 3 44700920 44700920 C T ZNF35 Silent p.I355I 0.39 TCGA-EK-A3GM-01 3 47046767 47046767 C T NBEAL2 Silent p.R2172R 0.28 TCGA-EK-A3GM-01 3 4712601 4712601 G C ITPR1 Missense_Mutation p.S717T 0.23 tolerated(0.96) benign(0.101) TCGA-EK-A3GM-01 3 48465618 48465618 C T PLXNB1 Missense_Mutation p.E135K 0.15 tolerated(0.05) probably_damaging(0.989) TCGA-EK-A3GM-01 3 49057948 49057948 C T NDUFAF3 5'Flank 0.21 TCGA-EK-A3GM-01 3 49694404 49694404 G A BSN Missense_Mutation p.R2472Q 0.43 unknown(0) TCGA-EK-A3GM-01 3 50334747 50334747 C T NAT6 Missense_Mutation p.E72K 0.24 tolerated(0.2) benign(0.022) TCGA-EK-A3GM-01 3 50336717 50336717 C T NAT6 5'UTR 0.15 TCGA-EK-A3GM-01 3 52423564 52423564 G A DNAH1 Missense_Mutation p.G3195R 0.40 benign(0.007) TCGA-EK-A3GM-01 3 56659024 56659024 T C FAM208A Missense_Mutation p.K1384E 0.22 tolerated(0.5) benign(0.127) TCGA-EK-A3GM-01 3 89259301 89259301 G A EPHA3 Missense_Mutation p.D149N 0.11 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GM-01 3 9854981 9854981 C T TTLL3 Silent p.F232F 0.21 TCGA-EK-A3GM-01 4 106159903 106159903 C A TET2 Intron 0.29 TCGA-EK-A3GM-01 4 106640343 106640343 G A GSTCD Missense_Mutation p.E185K 0.18 tolerated(0.24) probably_damaging(0.993) TCGA-EK-A3GM-01 4 128726255 128726255 T C HSPA4L Missense_Mutation p.I338T 0.71 deleterious(0) possibly_damaging(0.756) TCGA-EK-A3GM-01 4 13583866 13583866 G A BOD1L1 Nonsense_Mutation p.Q2863* 0.64 TCGA-EK-A3GM-01 4 144469252 144469252 C T SMARCA5 Nonsense_Mutation p.Q982* 0.24 TCGA-EK-A3GM-01 4 147561325 147561325 G A POU4F2 Missense_Mutation p.G199R 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-EK-A3GM-01 4 156723668 156723668 C G GUCY1B3 Silent p.L450L 0.37 TCGA-EK-A3GM-01 4 164395042 164395042 G A TKTL2 5'UTR 0.45 TCGA-EK-A3GM-01 4 166243988 166243988 C T KLHL2 3'Flank 0.33 TCGA-EK-A3GM-01 4 174169343 174169343 C T GALNT7 Silent p.L113L 0.36 TCGA-EK-A3GM-01 4 8469914 8469914 C G TRMT44 Missense_Mutation p.H590D 0.25 deleterious(0.04) benign(0.09) TCGA-EK-A3GM-01 5 111576451 111576451 G A EPB41L4A Silent p.L284L 0.33 TCGA-EK-A3GM-01 5 112878116 112878116 G A YTHDC2 Missense_Mutation p.A471T 0.42 tolerated(0.34) benign(0.002) TCGA-EK-A3GM-01 5 140241112 140241112 G A AC005609.1 3'UTR 0.05 TCGA-EK-A3GM-01 5 140516882 140516882 G A PCDHB5 Silent p.E622E 0.24 TCGA-EK-A3GM-01 5 140744136 140744136 G A PCDHGA5 Missense_Mutation p.R80Q 0.32 deleterious_low_confidence(0.04) benign(0.292) TCGA-EK-A3GM-01 5 150028756 150028756 T C SYNPO Missense_Mutation p.S551P 0.18 deleterious(0.05) benign(0.245) TCGA-EK-A3GM-01 5 160071212 160071212 C G ATP10B Missense_Mutation p.E267D 0.27 tolerated(0.1) benign(0.439) TCGA-EK-A3GM-01 5 169724598 169724598 C T LCP2 Silent p.V6V 0.20 TCGA-EK-A3GM-01 5 180687567 180687567 C T TRIM52 Missense_Mutation p.R83Q 0.31 deleterious(0.02) probably_damaging(0.98) TCGA-EK-A3GM-01 5 635548 635548 G A CEP72 Silent p.Q251Q 0.13 TCGA-EK-A3GM-01 5 68660976 68660976 G T TAF9 Missense_Mutation p.P197T 0.30 tolerated(0.46) benign(0.003) TCGA-EK-A3GM-01 5 68660982 68660982 G A TAF9 Nonsense_Mutation p.Q195* 0.28 TCGA-EK-A3GM-01 5 73923403 73923403 T C ENC1 3'UTR 0.17 TCGA-EK-A3GM-01 6 13644799 13644799 C G RANBP9 Missense_Mutation p.E364Q 0.13 tolerated(0.09) probably_damaging(0.986) TCGA-EK-A3GM-01 6 157527979 157527979 A - ARID1B Frame_Shift_Del p.K1902Sfs*72 0.33 TCGA-EK-A3GM-01 6 30121456 30121456 G A TRIM10 3'UTR 0.40 TCGA-EK-A3GM-01 6 33543651 33543651 C T BAK1 Missense_Mutation p.R42H 0.34 deleterious(0.03) benign(0.129) TCGA-EK-A3GM-01 6 35930377 35930377 G A SLC26A8 Silent p.L463L 0.29 TCGA-EK-A3GM-01 6 36652031 36652031 C T CDKN1A Silent p.F51F 0.40 TCGA-EK-A3GM-01 6 43305622 43305622 G C ZNF318 Silent p.V2038V 0.20 TCGA-EK-A3GM-01 6 43416925 43416925 C T ABCC10 Missense_Mutation p.L1396F 0.28 deleterious(0.02) probably_damaging(1) TCGA-EK-A3GM-01 6 45399640 45399640 C T RUNX2 Missense_Mutation p.T155I 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-EK-A3GM-01 6 47649467 47649467 G A GPR111 Missense_Mutation p.R391K 0.18 tolerated(0.69) benign(0.01) TCGA-EK-A3GM-01 6 56035614 56035614 G C COL21A1 Missense_Mutation p.Q287E 0.33 deleterious(0.01) benign(0.17) TCGA-EK-A3GM-01 6 66200538 66200538 T C EYS Missense_Mutation p.S271G 0.21 tolerated(0.46) benign(0.001) TCGA-EK-A3GM-01 6 72926938 72926938 C G RIMS1 Intron 0.30 TCGA-EK-A3GM-01 6 7583547 7583547 A G DSP Missense_Mutation p.I2018V 0.37 probably_damaging(0.946) TCGA-EK-A3GM-01 7 107115844 107115844 G A GPR22 3'UTR 0.17 TCGA-EK-A3GM-01 7 151884356 151884356 C A KMT2C Nonsense_Mutation p.E1667* 0.25 TCGA-EK-A3GM-01 7 5643567 5643567 C T FSCN1 Silent p.I395I 0.25 TCGA-EK-A3GM-01 7 66760730 66760730 C T Y_RNA 3'Flank 0.29 TCGA-EK-A3GM-01 7 71177116 71177116 G A WBSCR17 Silent p.K594K 0.22 TCGA-EK-A3GM-01 7 71178134 71178134 G A WBSCR17 3'UTR 0.29 TCGA-EK-A3GM-01 7 72277881 72277881 G A TYW1B Silent p.G167G 0.31 TCGA-EK-A3GM-01 7 77227200 77227200 C T PTPN12 Silent p.L178L 0.14 TCGA-EK-A3GM-01 7 81746416 81746416 C T CACNA2D1 Missense_Mutation p.R157Q 0.31 tolerated(0.29) probably_damaging(0.999) TCGA-EK-A3GM-01 7 90897934 90897934 A G FZD1 3'UTR 0.33 TCGA-EK-A3GM-01 7 92236391 92236391 C T CDK6 3'UTR 0.28 TCGA-EK-A3GM-01 7 99032588 99032588 G C ATP5J2-PTCD1 Missense_Mutation p.S142C 0.15 deleterious(0) probably_damaging(0.996) TCGA-EK-A3GM-01 7 99453276 99453276 G C CYP3A43 Missense_Mutation p.V245L 0.42 tolerated(0.16) benign(0.096) TCGA-EK-A3GM-01 8 120774729 120774729 G T TAF2 Silent p.L828L 0.47 TCGA-EK-A3GM-01 8 141542680 141542680 C T AGO2 Nonsense_Mutation p.W769* 0.43 TCGA-EK-A3GM-01 8 144413431 144413431 G A TOP1MT Silent p.Y67Y 0.12 TCGA-EK-A3GM-01 8 37697140 37697140 G A GPR124 Silent p.A837A 0.31 TCGA-EK-A3GM-01 8 77618006 77618006 C T ZFHX4 Silent p.D561D 0.34 TCGA-EK-A3GM-01 8 91971140 91971140 G A C8orf88 3'UTR 0.49 TCGA-EK-A3GM-01 9 101915540 101915540 C T TGFBR1 3'UTR 0.27 TCGA-EK-A3GM-01 9 117350073 117350073 C T ATP6V1G1 5'UTR 0.35 TCGA-EK-A3GM-01 9 139750833 139750833 G A MAMDC4 Intron 0.36 TCGA-EK-A3GM-01 9 37120659 37120659 C T ZCCHC7 Intron 0.25 TCGA-EK-A3GM-01 9 79320705 79320705 G C PRUNE2 Missense_Mutation p.S2162C 0.44 deleterious(0.01) possibly_damaging(0.789) TCGA-EK-A3GM-01 9 8319890 8319890 C G PTPRD Missense_Mutation p.D1871H 0.28 deleterious(0) probably_damaging(1) TCGA-EK-A3GM-01 9 86617223 86617223 A G RMI1 Missense_Mutation p.K441R 0.25 tolerated(0.8) benign(0.004) TCGA-EK-A3GM-01 9 97081084 97081084 G A NUTM2F Missense_Mutation p.S645F 0.37 deleterious(0) probably_damaging(0.966) TCGA-EK-A3GM-01 X 133378999 133378999 G A CCDC160 Missense_Mutation p.E57K 0.23 deleterious(0.02) possibly_damaging(0.486) TCGA-EK-A3GM-01 X 135480160 135480160 C G GPR112 Missense_Mutation p.H2769D 0.21 deleterious(0.04) benign(0.063) TCGA-EK-A3GM-01 X 148584733 148584733 C T IDS Intron 0.16 TCGA-EK-A3GM-01 X 153698913 153698913 G T PLXNA3 Missense_Mutation p.Q1705H 0.21 deleterious(0.02) possibly_damaging(0.817) TCGA-EK-A3GM-01 X 19046342 19046342 C T GPR64 Missense_Mutation p.E125K 0.19 tolerated_low_confidence(0.52) benign(0.348) TCGA-EK-A3GM-01 X 54841756 54841756 G A MAGED2 Missense_Mutation p.E488K 0.15 tolerated(0.34) benign(0.32) TCGA-EK-A3GM-01 X 57021369 57021369 C T SPIN3 Silent p.P4P 0.17 TCGA-EK-A3GM-01 X 69458097 69458097 C G AWAT1 Missense_Mutation p.L166V 0.23 deleterious(0.02) possibly_damaging(0.688) TCGA-EK-A3GM-01 X 71495421 71495421 C T RPS4X Missense_Mutation p.D79N 0.25 deleterious(0.05) benign(0.193) TCGA-EK-A3GM-01 X 7177409 7177409 G C STS Missense_Mutation p.M139I 0.15 tolerated(0.15) benign(0.008) TCGA-EK-A3GM-01 X 77245408 77245408 G A ATP7A Silent p.T430T 0.07 TCGA-EK-A3GN-01 10 135024981 135024981 G A KNDC1 Missense_Mutation p.V1322I 0.48 tolerated(0.72) benign(0.03) TCGA-EK-A3GN-01 10 73569598 73569598 G T CDH23 Missense_Mutation p.R675L 0.31 tolerated(0.07) possibly_damaging(0.676) TCGA-EK-A3GN-01 10 94828206 94828206 C T CYP26C1 Missense_Mutation p.R441W 0.42 deleterious(0.03) benign(0.001) TCGA-EK-A3GN-01 10 99770902 99770902 C T CRTAC1 Missense_Mutation p.V73M 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-EK-A3GN-01 11 60610305 60610305 G A CCDC86 Silent p.P236P 0.29 TCGA-EK-A3GN-01 11 68671240 68671240 C A MRPL21 Silent p.L13L 0.22 TCGA-EK-A3GN-01 11 85375525 85375525 G A CREBZF Missense_Mutation p.S132L 0.33 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-EK-A3GN-01 12 121014518 121014518 T G RNF10 3'UTR 0.52 TCGA-EK-A3GN-01 12 56213206 56213206 C T ORMDL2 Silent p.H85H 0.33 TCGA-EK-A3GN-01 12 56429484 56429484 G A IKZF4 3'UTR 0.58 TCGA-EK-A3GN-01 12 56429966 56429966 G A IKZF4 3'UTR 0.53 TCGA-EK-A3GN-01 14 20841447 20841447 G A TEP1 Nonsense_Mutation p.Q2266* 0.29 TCGA-EK-A3GN-01 14 51467500 51467500 G A TRIM9 Silent p.N455N 0.42 TCGA-EK-A3GN-01 15 35045326 35045326 G A GJD2 Missense_Mutation p.R107C 0.18 deleterious(0.01) probably_damaging(0.939) TCGA-EK-A3GN-01 15 41059543 41059566 AGTGACCTTCTCATGCTGATTTGC - GCHFR Missense_Mutation 0.41 TCGA-EK-A3GN-01 15 42454321 42454321 C T VPS39 Missense_Mutation p.R790H 0.37 tolerated(0.2) benign(0.022) TCGA-EK-A3GN-01 15 64385878 64385878 G A FAM96A Silent p.P30P 0.34 TCGA-EK-A3GN-01 16 1246002 1246002 C T CACNA1H Missense_Mutation p.R208C 0.58 deleterious(0) probably_damaging(0.999) TCGA-EK-A3GN-01 16 54967571 54967571 C T IRX5 Missense_Mutation p.T413M 0.25 deleterious(0) unknown(0) TCGA-EK-A3GN-01 16 65006813 65006813 C T CDH11 Missense_Mutation p.E462K 0.14 tolerated(0.11) probably_damaging(0.996) TCGA-EK-A3GN-01 16 71697826 71697826 T C PHLPP2 Missense_Mutation p.N654S 0.32 deleterious(0.01) probably_damaging(0.955) TCGA-EK-A3GN-01 17 22024729 22024729 T C MTRNR2L1 3'Flank 0.31 TCGA-EK-A3GN-01 17 30327944 30327944 G C SUZ12 3'UTR 0.18 TCGA-EK-A3GN-01 17 36719744 36719744 C T SRCIN1 Silent p.L185L 0.41 TCGA-EK-A3GN-01 17 37822158 37822158 C T TCAP Silent p.G100G 0.36 TCGA-EK-A3GN-01 17 62149426 62149426 C T ERN1 Silent p.L131L 0.31 TCGA-EK-A3GN-01 17 62152586 62152586 C T ERN1 Missense_Mutation p.E102K 0.29 deleterious(0) probably_damaging(0.99) TCGA-EK-A3GN-01 18 21453031 21453031 C T LAMA3 Intron 0.34 TCGA-EK-A3GN-01 19 10741799 10741799 C G SLC44A2 Missense_Mutation p.F104L 0.43 tolerated(1) benign(0.013) TCGA-EK-A3GN-01 19 14580219 14580219 C G PKN1 Silent p.L687L 0.26 TCGA-EK-A3GN-01 19 1496286 1496286 C A REEP6 Nonsense_Mutation p.C117* 0.44 TCGA-EK-A3GN-01 19 15484149 15484149 G A AKAP8 Missense_Mutation p.S125F 0.27 deleterious(0.05) possibly_damaging(0.907) TCGA-EK-A3GN-01 19 16000293 16000293 G A CYP4F2 Silent p.F286F 0.28 TCGA-EK-A3GN-01 19 51883320 51883320 C T LIM2 3'UTR 0.31 TCGA-EK-A3GN-01 19 52222789 52222789 C T HAS1 Silent p.P124P 0.23 TCGA-EK-A3GN-01 1 10719869 10719869 G A CASZ1 Silent p.P410P 0.29 TCGA-EK-A3GN-01 1 150772083 150772083 G A CTSK Nonsense_Mutation p.R241* 0.64 TCGA-EK-A3GN-01 1 155166959 155166959 G A THBS3 Silent p.L849L 0.24 TCGA-EK-A3GN-01 1 155239279 155239279 C T CLK2 Silent p.S133S 0.59 TCGA-EK-A3GN-01 1 156875139 156875139 G A PEAR1 Missense_Mutation p.R77H 0.18 deleterious(0.01) benign(0.082) TCGA-EK-A3GN-01 1 173907744 173907744 T G RC3H1 3'UTR 0.29 TCGA-EK-A3GN-01 1 180853188 180853188 G A XPR1 Missense_Mutation p.E693K 0.52 deleterious_low_confidence(0.02) benign(0.427) TCGA-EK-A3GN-01 1 221507232 221507232 G A RP11-421L10.1 RNA 0.08 TCGA-EK-A3GN-01 1 228588758 228588758 G A TRIM11 Silent p.G214G 0.66 TCGA-EK-A3GN-01 1 29379717 29379717 A T EPB41 Nonsense_Mutation p.K580* 0.32 TCGA-EK-A3GN-01 1 6520730 6520730 C G ESPN 3'UTR 0.20 TCGA-EK-A3GN-01 1 6520986 6520986 C T ESPN 3'UTR 0.28 TCGA-EK-A3GN-01 1 6520999 6520999 C T ESPN 3'UTR 0.29 TCGA-EK-A3GN-01 1 86048260 86048260 A T CYR61 Missense_Mutation p.I266F 0.50 deleterious(0.01) benign(0.159) TCGA-EK-A3GN-01 20 33568502 33568502 C T MYH7B Missense_Mutation p.A197V 0.21 benign(0.394) TCGA-EK-A3GN-01 20 34022246 34022246 C T GDF5 Missense_Mutation p.D323N 0.36 tolerated(0.1) benign(0.015) TCGA-EK-A3GN-01 20 62595898 62595898 C T ZNF512B Silent p.L402L 0.17 TCGA-EK-A3GN-01 21 47333873 47333873 G A PCBP3 Silent p.P203P 0.79 TCGA-EK-A3GN-01 22 25297862 25297862 C T SGSM1 Silent p.C946C 0.67 TCGA-EK-A3GN-01 2 1312325 1312325 G A SNTG2 Silent p.A448A 0.53 TCGA-EK-A3GN-01 2 136872366 136872366 C A CXCR4 3'UTR 0.42 TCGA-EK-A3GN-01 2 179567367 179567367 G A TTN Missense_Mutation p.R10083C 0.24 TCGA-EK-A3GN-01 2 220136719 220136719 G A TUBA4B RNA 0.32 TCGA-EK-A3GN-01 2 241569402 241569402 C T GPR35 Silent p.S42S 0.24 TCGA-EK-A3GN-01 2 55470638 55470638 C T MTIF2 Missense_Mutation p.R493Q 0.35 tolerated(0.47) benign(0.001) TCGA-EK-A3GN-01 2 77748860 77748860 G A LRRTM4 5'UTR 0.38 TCGA-EK-A3GN-01 3 122145813 122145813 G A KPNA1 3'UTR 0.26 TCGA-EK-A3GN-01 3 130674983 130674983 C T ATP2C1 Silent p.L298L 0.38 TCGA-EK-A3GN-01 3 193210717 193210717 T C ATP13A4 Silent p.E174E 0.60 TCGA-EK-A3GN-01 3 49137041 49137041 G A QARS Silent p.V476V 0.26 TCGA-EK-A3GN-01 3 49705630 49705630 G A BSN 3'UTR 0.21 TCGA-EK-A3GN-01 3 49867119 49867119 G A TRAIP Silent p.V389V 0.28 TCGA-EK-A3GN-01 3 50005813 50005813 G A RBM6 Missense_Mutation p.D319N 0.27 tolerated(0.53) possibly_damaging(0.735) TCGA-EK-A3GN-01 4 122828660 122828660 C G TRPC3 Missense_Mutation p.V619L 0.35 tolerated(0.27) possibly_damaging(0.649) TCGA-EK-A3GN-01 4 153251907 153251907 G A FBXW7 Nonsense_Mutation p.R367* 0.64 TCGA-EK-A3GN-01 4 187201212 187201212 C T F11 Missense_Mutation p.R268C 0.27 tolerated(0.18) possibly_damaging(0.887) TCGA-EK-A3GN-01 4 5624288 5624288 C T EVC2 Missense_Mutation p.R826Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-EK-A3GN-01 5 140480046 140480046 C T PCDHB3 5'Flank 0.50 TCGA-EK-A3GN-01 5 140745349 140745349 C T PCDHGA5 Silent p.N484N 0.27 TCGA-EK-A3GN-01 5 36955658 36955658 T C NIPBL Missense_Mutation p.V50A 0.14 tolerated(0.46) probably_damaging(0.977) TCGA-EK-A3GN-01 5 50683468 50683468 G A ISL1 Silent p.A121A 0.82 TCGA-EK-A3GN-01 5 79025497 79025497 G C CMYA5 Missense_Mutation p.W303C 0.33 possibly_damaging(0.893) TCGA-EK-A3GN-01 5 9197373 9197373 G A SEMA5A Silent p.S325S 0.14 TCGA-EK-A3GN-01 6 24447152 24447152 G A GPLD1 Silent p.S578S 0.33 TCGA-EK-A3GN-01 6 27858549 27858549 C A HIST1H3J Missense_Mutation p.A8S 0.27 deleterious_low_confidence(0.03) benign(0.004) TCGA-EK-A3GN-01 6 36270034 36270034 C - PNPLA1 Frame_Shift_Del p.P392Hfs*64 0.53 TCGA-EK-A3GN-01 6 91296658 91296658 G A MAP3K7 5'UTR 0.73 TCGA-EK-A3GN-01 7 132192823 132192823 C T PLXNA4 Silent p.A210A 0.17 TCGA-EK-A3GN-01 7 137148328 137148328 C T DGKI Missense_Mutation p.R889Q 0.14 tolerated(0.1) benign(0.002) TCGA-EK-A3GN-01 7 138954155 138954155 A G UBN2 Silent p.L494L 0.25 TCGA-EK-A3GN-01 7 38805239 38805239 T C VPS41 Missense_Mutation p.K424E 0.31 tolerated(0.1) benign(0.288) TCGA-EK-A3GN-01 7 66785110 66785110 C T STAG3L4 RNA 0.33 TCGA-EK-A3GN-01 7 97833404 97833404 G A LMTK2 Silent p.P1463P 0.46 TCGA-EK-A3GN-01 8 113317096 113317096 C T CSMD3 Nonsense_Mutation p.W2707* 0.19 TCGA-EK-A3GN-01 8 17188743 17188743 C T MTMR7 Missense_Mutation p.D261N 0.52 tolerated(0.19) probably_damaging(0.99) TCGA-EK-A3GN-01 8 57076048 57076048 T A PLAG1 3'UTR 0.20 TCGA-EK-A3GN-01 8 61102461 61102461 C T CA8 3'UTR 0.40 TCGA-EK-A3GN-01 8 61693596 61693596 C T CHD7 Missense_Mutation p.P568L 0.23 possibly_damaging(0.726) TCGA-EK-A3GN-01 9 101832135 101832135 C T COL15A1 Silent p.I1378I 0.44 TCGA-EK-A3GN-01 9 114984426 114984426 G A PTBP3 3'UTR 0.21 TCGA-EK-A3GN-01 9 125487177 125487177 G A OR1L4 Silent p.K303K 0.41 TCGA-EK-A3GN-01 9 137706730 137706730 G A COL5A1 Missense_Mutation p.D1332N 0.48 unknown(0) TCGA-EK-A3GN-01 9 139564113 139564113 C T EGFL7 Missense_Mutation p.R85C 0.38 tolerated(0.18) probably_damaging(0.965) TCGA-EK-A3GN-01 9 98211363 98211363 G A PTCH1 Silent p.F1264F 0.26 TCGA-EK-A3GN-01 X 100118222 100118222 C T NOX1 Missense_Mutation p.R88H 0.28 tolerated(0.34) benign(0.066) TCGA-EK-A3GN-01 X 106172818 106172819 - A CLDN2 3'UTR 0.24 TCGA-EK-A3GN-01 X 119562312 119562315 AAAC - LAMP2 3'UTR 0.33 TCGA-EK-A3GN-01 X 142718125 142718125 C T SLITRK4 Missense_Mutation p.G267D 0.28 tolerated(0.62) probably_damaging(0.999) TCGA-EK-A3GN-01 X 148615669 148615669 C T IDS 5'Flank 0.21 TCGA-EK-A3GN-01 X 37300710 37300710 G A PRRG1 Intron 0.36 TCGA-EK-A3GN-01 X 83372122 83372122 C T RPS6KA6 Missense_Mutation p.E299K 0.34 deleterious(0.04) probably_damaging(0.928) TCGA-EX-A1H5-01 10 12198972 12198972 G A SEC61A2 Missense_Mutation p.R228Q 0.63 tolerated(0.06) possibly_damaging(0.478) TCGA-EX-A1H5-01 10 38343652 38343652 G A ZNF33A Silent p.L200L 0.65 TCGA-EX-A1H5-01 10 38343662 38343662 G A ZNF33A Missense_Mutation p.E204K 0.67 tolerated(0.36) benign(0.013) TCGA-EX-A1H5-01 10 99126355 99126355 G A RRP12 Missense_Mutation p.S1080L 0.05 deleterious(0) possibly_damaging(0.842) TCGA-EX-A1H5-01 11 62455621 62455621 G A LRRN4CL Silent p.D120D 0.45 TCGA-EX-A1H5-01 11 7647010 7647010 T C PPFIBP2 Silent p.A238A 0.05 TCGA-EX-A1H5-01 12 4870147 4870147 C T GALNT8 Silent p.V399V 0.49 TCGA-EX-A1H5-01 14 74206775 74206775 C T ELMSAN1 5'UTR 0.16 TCGA-EX-A1H5-01 16 1810463 1810463 T C MAPK8IP3 Silent p.L462L 0.75 TCGA-EX-A1H5-01 16 18853011 18853011 C T SMG1 Missense_Mutation p.R2191Q 0.04 deleterious(0.02) probably_damaging(0.987) TCGA-EX-A1H5-01 16 21328281 21328281 C T CRYM-AS1 RNA 0.42 TCGA-EX-A1H5-01 16 27549577 27549579 AGG - GTF3C1 In_Frame_Del p.S177del 0.14 TCGA-EX-A1H5-01 16 70303578 70303578 G A AARS Missense_Mutation p.A302V 0.36 tolerated(1) probably_damaging(0.999) TCGA-EX-A1H5-01 17 32956104 32956104 C T TMEM132E Missense_Mutation p.R317W 0.33 deleterious(0) probably_damaging(0.982) TCGA-EX-A1H5-01 17 48545702 48545704 TTG - CHAD In_Frame_Del p.N157del 0.28 TCGA-EX-A1H5-01 18 54605881 54605881 A G WDR7 Missense_Mutation p.M1317V 0.37 tolerated(0.05) probably_damaging(0.91) TCGA-EX-A1H5-01 18 59166539 59166539 G A CDH20 Missense_Mutation p.D123N 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-EX-A1H5-01 18 65181691 65181691 G T DSEL Missense_Mutation p.P62H 0.34 tolerated_low_confidence(0.19) benign(0.002) TCGA-EX-A1H5-01 19 21607379 21607379 C T ZNF493 Missense_Mutation p.R640W 0.40 tolerated(0.27) benign(0.016) TCGA-EX-A1H5-01 19 36517911 36517911 C T CLIP3 Missense_Mutation p.G115R 0.32 deleterious(0.04) benign(0.236) TCGA-EX-A1H5-01 19 8953854 8953854 G C MBD3L1 Missense_Mutation p.R167T 0.29 deleterious(0) possibly_damaging(0.842) TCGA-EX-A1H5-01 1 10699536 10699536 C T CASZ1 Silent p.T1581T 0.42 TCGA-EX-A1H5-01 1 145688331 145688331 C T RNF115 3'UTR 0.43 TCGA-EX-A1H5-01 1 148251868 148251868 G A NBPF20 3'UTR 0.39 TCGA-EX-A1H5-01 1 148594456 148594456 G A NBPF15 Missense_Mutation p.R610K 0.34 tolerated(0.07) possibly_damaging(0.577) TCGA-EX-A1H5-01 1 16044409 16044409 C T PLEKHM2 Missense_Mutation p.A100V 0.45 deleterious(0.02) probably_damaging(0.91) TCGA-EX-A1H5-01 1 162737062 162737062 T C DDR2 Silent p.I402I 0.06 TCGA-EX-A1H5-01 1 204408075 204408075 G A PIK3C2B Silent p.D1168D 0.20 TCGA-EX-A1H5-01 1 223176989 223176989 C T DISP1 Silent p.S750S 0.36 TCGA-EX-A1H5-01 1 227076555 227076555 G T PSEN2 Missense_Mutation p.A198S 0.10 tolerated(0.25) probably_damaging(0.934) TCGA-EX-A1H5-01 1 29314294 29314294 G A EPB41 Silent p.E115E 0.34 TCGA-EX-A1H5-01 1 35579239 35579239 G A ZMYM1 Missense_Mutation p.R603Q 0.41 tolerated(0.45) benign(0.042) TCGA-EX-A1H5-01 1 37270815 37270815 T A GRIK3 Missense_Mutation p.T780S 0.28 tolerated(1) benign(0.084) TCGA-EX-A1H5-01 20 18395005 18395005 C T DZANK1 Missense_Mutation p.R410H 0.36 tolerated(0.68) benign(0.002) TCGA-EX-A1H5-01 20 49626346 49626346 G A KCNG1 Missense_Mutation p.A177V 0.44 tolerated(0.32) benign(0.049) TCGA-EX-A1H5-01 21 11038789 11038789 C T BAGE2 RNA 0.11 TCGA-EX-A1H5-01 22 19165323 19165323 C T SLC25A1 Missense_Mutation p.D120N 0.46 tolerated(0.27) benign(0.008) TCGA-EX-A1H5-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.81 probably_damaging(1) TCGA-EX-A1H5-01 22 50987890 50987890 C T KLHDC7B Missense_Mutation p.A432V 0.84 deleterious(0) probably_damaging(0.998) TCGA-EX-A1H5-01 2 113955395 113955395 C T PSD4 Silent p.H843H 0.24 TCGA-EX-A1H5-01 2 130877709 130877709 G A POTEF Missense_Mutation p.A127V 0.39 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-EX-A1H5-01 2 208865987 208865987 C T PLEKHM3 Missense_Mutation p.R126Q 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-EX-A1H5-01 3 124209703 124209703 C T KALRN Missense_Mutation p.T1518M 0.55 deleterious(0.01) benign(0.218) TCGA-EX-A1H5-01 3 49004687 49004687 G A ARIH2 Missense_Mutation p.V173I 0.07 tolerated(1) possibly_damaging(0.452) TCGA-EX-A1H5-01 4 113353125 113353125 A C ALPK1 Missense_Mutation p.N808H 0.54 tolerated(0.11) benign(0.211) TCGA-EX-A1H5-01 4 144359596 144359596 G A GAB1 Silent p.P346P 0.70 TCGA-EX-A1H5-01 5 96322254 96322254 C T LNPEP Silent p.V337V 0.57 TCGA-EX-A1H5-01 6 32905075 32905075 C A HLA-DMB Missense_Mutation p.A166S 0.33 tolerated(0.08) benign(0.084) TCGA-EX-A1H5-01 6 33148097 33148097 G A COL11A2 Nonsense_Mutation p.R347* 0.37 TCGA-EX-A1H5-01 6 66044995 66044998 CTGA - EYS Frame_Shift_Del p.S547Rfs*62 0.47 TCGA-EX-A1H5-01 7 77267950 77267950 C T PTPN12 Missense_Mutation p.A728V 0.70 tolerated(0.24) benign(0.001) TCGA-EX-A1H5-01 8 143614774 143614774 G A BAI1 Missense_Mutation p.D1173N 0.57 tolerated(0.27) possibly_damaging(0.831) TCGA-EX-A1H5-01 8 3087731 3087731 G A CSMD1 Silent p.N1392N 0.19 TCGA-EX-A1H5-01 9 135759455 135759455 C T C9orf9 Missense_Mutation p.R41W 0.42 deleterious(0) probably_damaging(0.981) TCGA-EX-A1H5-01 9 14737284 14737284 A G FREM1 3'UTR 0.15 TCGA-EX-A1H5-01 9 35752745 35752745 G A RGP1 Nonsense_Mutation p.W350* 0.39 TCGA-EX-A1H5-01 9 36117064 36117064 G A RECK Missense_Mutation p.A715T 0.47 tolerated(0.75) benign(0) TCGA-EX-A1H5-01 X 133549136 133549136 C T PHF6 Nonsense_Mutation p.R274* 0.10 TCGA-EX-A1H5-01 X 150841059 150841059 G A PASD1 Silent p.Q614Q 0.33 TCGA-EX-A1H5-01 X 153693147 153693147 G A PLXNA3 Missense_Mutation p.R660H 0.21 deleterious(0.02) possibly_damaging(0.908) TCGA-EX-A1H5-01 X 31838149 31838149 G - DMD Frame_Shift_Del p.Q2418Kfs*3 0.32 TCGA-EX-A1H6-01 10 117884787 117884787 C T GFRA1 Missense_Mutation p.E239K 0.30 tolerated(0.09) benign(0.008) TCGA-EX-A1H6-01 10 119308319 119308319 C T EMX2 3'UTR 0.31 TCGA-EX-A1H6-01 10 3190162 3190162 C T PITRM1 Intron 0.09 TCGA-EX-A1H6-01 10 5777311 5777311 G C FAM208B Missense_Mutation p.D417H 0.13 deleterious(0.02) benign(0.048) TCGA-EX-A1H6-01 10 70968684 70968684 G C SUPV3L1 Missense_Mutation p.E752Q 0.48 tolerated(1) benign(0.002) TCGA-EX-A1H6-01 10 72327149 72327149 C T PALD1 3'UTR 0.36 TCGA-EX-A1H6-01 10 95191259 95191259 G A MYOF Missense_Mutation p.A84V 0.22 tolerated(0.25) benign(0.236) TCGA-EX-A1H6-01 11 117278703 117278703 G C CEP164 Missense_Mutation p.K1188N 0.25 deleterious(0) probably_damaging(0.964) TCGA-EX-A1H6-01 11 1257694 1257694 C T MUC5B Missense_Mutation p.R987C 0.23 unknown(0) TCGA-EX-A1H6-01 11 47295389 47295389 C G MADD 5'UTR 0.12 TCGA-EX-A1H6-01 11 57466055 57466055 G C ZDHHC5 Missense_Mutation p.E383Q 0.09 tolerated(0.33) benign(0.322) TCGA-EX-A1H6-01 11 60428208 60428208 G A LINC00301 RNA 0.21 TCGA-EX-A1H6-01 11 63176276 63176276 C G SLC22A9 Missense_Mutation p.S509C 0.05 deleterious(0.05) possibly_damaging(0.827) TCGA-EX-A1H6-01 12 11139426 11139426 G A TAS2R50 Silent p.L12L 0.32 TCGA-EX-A1H6-01 12 119772968 119772968 G A CCDC60 5'UTR 0.32 TCGA-EX-A1H6-01 12 12044646 12044646 G C ETV6 3'UTR 0.37 TCGA-EX-A1H6-01 12 12491469 12491469 G C MANSC1 Missense_Mutation p.I83M 0.29 deleterious(0) probably_damaging(0.999) TCGA-EX-A1H6-01 12 47170786 47170786 G A SLC38A4 Missense_Mutation p.R359W 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-EX-A1H6-01 12 49332475 49332475 G T ARF3 3'UTR 0.15 TCGA-EX-A1H6-01 12 49436343 49436343 C A KMT2D Splice_Site p.X1956_splice 0.13 TCGA-EX-A1H6-01 13 101735195 101735195 T C NALCN Missense_Mutation p.M1244V 0.09 tolerated(1) benign(0.004) TCGA-EX-A1H6-01 13 114323999 114323999 C G GRK1 Intron 0.47 TCGA-EX-A1H6-01 13 58206826 58206826 C T PCDH17 Missense_Mutation p.P49L 0.29 tolerated(0.59) benign(0) TCGA-EX-A1H6-01 13 84452950 84452950 G A SLITRK1 3'UTR 0.35 TCGA-EX-A1H6-01 13 96508441 96508441 C G UGGT2 Missense_Mutation p.D1327H 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-EX-A1H6-01 14 20403832 20403832 C A OR4K1 Missense_Mutation p.H3N 0.14 tolerated(0.32) benign(0.001) TCGA-EX-A1H6-01 14 20665809 20665811 CTT - OR11G2 In_Frame_Del p.F106del 0.29 TCGA-EX-A1H6-01 14 21769221 21769221 G A RPGRIP1 Silent p.Q105Q 0.32 TCGA-EX-A1H6-01 14 21961254 21961254 C G TOX4 Missense_Mutation p.I493M 0.04 deleterious(0) benign(0.063) TCGA-EX-A1H6-01 14 22392337 22392337 G A TRAV14DV4 Silent p.K8K 0.21 TCGA-EX-A1H6-01 14 55514560 55514560 C G SOCS4 3'UTR 0.29 TCGA-EX-A1H6-01 14 69864945 69864945 C T ERH Intron 0.19 TCGA-EX-A1H6-01 14 74411422 74411422 C T FAM161B Missense_Mutation p.E244K 0.33 deleterious(0) probably_damaging(0.999) TCGA-EX-A1H6-01 15 25924215 25924215 C G ATP10A 3'UTR 0.32 TCGA-EX-A1H6-01 15 40623912 40623912 C T C15orf52 3'Flank 0.19 TCGA-EX-A1H6-01 15 66639623 66639623 G A TIPIN Intron 0.23 TCGA-EX-A1H6-01 15 67073399 67073399 C T SMAD6 Silent p.H339H 0.10 TCGA-EX-A1H6-01 15 77310554 77310554 G A PSTPIP1 Silent p.K34K 0.29 TCGA-EX-A1H6-01 16 28990592 28990592 G A SPNS1 Missense_Mutation p.M187I 0.33 deleterious(0) possibly_damaging(0.876) TCGA-EX-A1H6-01 16 55727946 55727946 A G SLC6A2 Missense_Mutation p.I315V 0.12 tolerated(0.49) benign(0.268) TCGA-EX-A1H6-01 16 57091982 57091982 C T NLRC5 Missense_Mutation p.S1251L 0.48 deleterious(0) possibly_damaging(0.493) TCGA-EX-A1H6-01 16 90059199 90059199 C T AFG3L1P RNA 0.11 TCGA-EX-A1H6-01 17 1325956 1325956 G C CRK 3'UTR 0.35 TCGA-EX-A1H6-01 17 14205134 14205134 C A HS3ST3B1 Nonsense_Mutation p.S100* 0.27 TCGA-EX-A1H6-01 17 18075537 18075537 C T MYO15A Missense_Mutation p.A3428V 0.22 unknown(0) TCGA-EX-A1H6-01 17 27030957 27030957 C G PROCA1 Missense_Mutation p.K210N 0.18 deleterious(0) probably_damaging(0.995) TCGA-EX-A1H6-01 17 36489893 36489893 C T GPR179 Missense_Mutation p.D605N 0.18 deleterious(0) probably_damaging(1) TCGA-EX-A1H6-01 17 38818185 38818185 C T KRT222 Missense_Mutation p.E70K 0.31 deleterious(0) benign(0.403) TCGA-EX-A1H6-01 17 39341030 39341030 C T KRTAP4-1 Missense_Mutation p.R26H 0.30 tolerated(0.12) benign(0.395) TCGA-EX-A1H6-01 17 51900705 51900705 C T KIF2B Missense_Mutation p.S104L 0.31 tolerated(0.21) benign(0.091) TCGA-EX-A1H6-01 17 72322384 72322384 G A KIF19 5'UTR 0.39 TCGA-EX-A1H6-01 17 74019496 74019496 G C EVPL Missense_Mutation p.I119M 0.08 deleterious(0.01) benign(0.17) TCGA-EX-A1H6-01 17 7452616 7452616 C T TNFSF12 Missense_Mutation p.S49L 0.26 tolerated_low_confidence(0.07) benign(0.003) TCGA-EX-A1H6-01 17 77921490 77921490 G C TBC1D16 Missense_Mutation p.T561R 0.26 deleterious(0) probably_damaging(0.984) TCGA-EX-A1H6-01 18 13884993 13884993 C A MC2R Silent p.V175V 0.53 TCGA-EX-A1H6-01 18 33572005 33572005 C G RPRD1A 3'UTR 0.28 TCGA-EX-A1H6-01 19 1242530 1242530 C T ATP5D Missense_Mutation p.H73Y 0.30 deleterious(0) probably_damaging(1) TCGA-EX-A1H6-01 19 15510182 15510182 C T AKAP8L Missense_Mutation p.R363H 0.12 tolerated(0.06) benign(0.001) TCGA-EX-A1H6-01 19 20026190 20026190 G A ZNF93 Silent p.E35E 0.13 TCGA-EX-A1H6-01 19 39421843 39421843 G C MRPS12 5'UTR 0.12 TCGA-EX-A1H6-01 19 51128796 51128796 G A SYT3 Silent p.I476I 0.25 TCGA-EX-A1H6-01 19 51298351 51298351 G C ACPT Missense_Mutation p.S406T 0.40 tolerated(0.88) benign(0.187) TCGA-EX-A1H6-01 19 56156988 56156988 G C ZNF581 3'UTR 0.21 TCGA-EX-A1H6-01 19 56702270 56702270 C T ZSCAN5B Silent p.L225L 0.31 TCGA-EX-A1H6-01 1 100336057 100336057 C T AGL Missense_Mutation p.R256C 0.33 deleterious(0.01) benign(0.006) TCGA-EX-A1H6-01 1 114936143 114936143 G A TRIM33 3'UTR 0.54 TCGA-EX-A1H6-01 1 152276866 152276866 G C FLG Missense_Mutation p.S3499C 0.25 unknown(0) TCGA-EX-A1H6-01 1 152277562 152277562 G A FLG Missense_Mutation p.S3267F 0.28 unknown(0) TCGA-EX-A1H6-01 1 152659559 152659559 C T LCE2B Silent p.L80L 0.22 TCGA-EX-A1H6-01 1 155735537 155735537 G A GON4L Nonsense_Mutation p.Q1243* 0.27 TCGA-EX-A1H6-01 1 201437555 201437555 G A PHLDA3 Silent p.L120L 0.20 TCGA-EX-A1H6-01 1 201437741 201437741 G A PHLDA3 Silent p.I58I 0.31 TCGA-EX-A1H6-01 1 227149078 227149078 C A ADCK3 Intron 0.23 TCGA-EX-A1H6-01 1 230827303 230827303 G A COG2 Missense_Mutation p.G703E 0.18 deleterious(0) possibly_damaging(0.883) TCGA-EX-A1H6-01 1 232600964 232600964 C T SIPA1L2 Silent p.E814E 0.06 TCGA-EX-A1H6-01 1 27108216 27108216 G A ARID1A 3'UTR 0.24 TCGA-EX-A1H6-01 1 31837306 31837306 C T ZCCHC17 3'UTR 0.26 TCGA-EX-A1H6-01 1 51171511 51171511 C T FAF1 Missense_Mutation p.E202K 0.17 tolerated(0.77) possibly_damaging(0.554) TCGA-EX-A1H6-01 1 59844426 59844426 G A FGGY Silent p.L157L 0.36 TCGA-EX-A1H6-01 1 70504040 70504040 C T LRRC7 Missense_Mutation p.R807C 0.26 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EX-A1H6-01 1 8926553 8926553 T C ENO1 Missense_Mutation p.N151S 0.28 deleterious_low_confidence(0.05) benign(0.056) TCGA-EX-A1H6-01 1 935157 935157 G C HES4 Missense_Mutation p.P66R 0.34 deleterious(0) probably_damaging(0.999) TCGA-EX-A1H6-01 20 30904625 30904625 C T KIF3B Missense_Mutation p.R566C 0.17 deleterious(0) possibly_damaging(0.848) TCGA-EX-A1H6-01 20 44995063 44995063 C T ELMO2 3'UTR 0.17 TCGA-EX-A1H6-01 21 41385099 41385099 G A DSCAM Silent p.A1967A 0.20 TCGA-EX-A1H6-01 21 47566208 47566208 G A FTCD Missense_Mutation p.P314S 0.05 deleterious(0.04) benign(0.306) TCGA-EX-A1H6-01 22 21991400 21991400 C T CCDC116 3'UTR 0.41 TCGA-EX-A1H6-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.08 deleterious(0) probably_damaging(0.999) TCGA-EX-A1H6-01 22 25155919 25155919 G A PIWIL3 Missense_Mutation p.P47L 0.31 deleterious(0.01) benign(0.104) TCGA-EX-A1H6-01 22 27019213 27019213 G A CRYBA4 Missense_Mutation p.E19K 0.36 tolerated(0.1) possibly_damaging(0.792) TCGA-EX-A1H6-01 22 31743010 31743010 G A AC005003.1 5'UTR 0.16 TCGA-EX-A1H6-01 22 49146585 49146585 G C FAM19A5 3'UTR 0.22 TCGA-EX-A1H6-01 2 128474785 128474785 C T WDR33 Missense_Mutation p.G938E 0.19 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-EX-A1H6-01 2 144966322 144966322 G C GTDC1 Missense_Mutation p.F9L 0.24 deleterious(0) probably_damaging(0.997) TCGA-EX-A1H6-01 2 149854923 149854923 G C KIF5C Missense_Mutation p.E704Q 0.11 deleterious(0.03) possibly_damaging(0.846) TCGA-EX-A1H6-01 2 170930076 170930076 G C UBR3 Missense_Mutation p.E1720Q 0.20 tolerated(0.56) probably_damaging(0.99) TCGA-EX-A1H6-01 2 179590293 179590293 C T TTN Missense_Mutation p.A6880T 0.34 TCGA-EX-A1H6-01 2 53994928 53994928 C T ASB3 Intron 0.49 TCGA-EX-A1H6-01 2 64780340 64780340 G A AFTPH Missense_Mutation p.E578K 0.22 tolerated(0.07) benign(0.419) TCGA-EX-A1H6-01 2 95950732 95950732 C T PROM2 Missense_Mutation p.R582W 0.33 deleterious(0) benign(0) TCGA-EX-A1H6-01 2 96542220 96542220 C A ANKRD36C Missense_Mutation p.K196N 0.04 tolerated(0.06) benign(0.002) TCGA-EX-A1H6-01 3 100976502 100976502 C T IMPG2 Missense_Mutation p.D342N 0.20 deleterious(0.05) benign(0.134) TCGA-EX-A1H6-01 3 129147381 129147381 G A EFCAB12 5'UTR 0.07 TCGA-EX-A1H6-01 3 194331718 194331718 G C TMEM44 Nonsense_Mutation p.S362* 0.13 TCGA-EX-A1H6-01 3 197422785 197422785 G A KIAA0226 Silent p.I475I 0.24 TCGA-EX-A1H6-01 3 53882697 53882697 C T IL17RB Nonsense_Mutation p.Q23* 0.06 TCGA-EX-A1H6-01 4 110736943 110736943 G A GAR1 5'UTR 0.36 TCGA-EX-A1H6-01 4 123164170 123164170 C A KIAA1109 Silent p.L1563L 0.25 TCGA-EX-A1H6-01 4 129100541 129100541 C G LARP1B Intron 0.24 TCGA-EX-A1H6-01 4 151169505 151169505 G A DCLK2 Missense_Mutation p.A659T 0.31 deleterious(0) probably_damaging(0.969) TCGA-EX-A1H6-01 4 15607356 15607356 G C FBXL5 Missense_Mutation p.S689C 0.23 deleterious(0) probably_damaging(0.999) TCGA-EX-A1H6-01 4 160275088 160275088 C A RAPGEF2 Missense_Mutation p.S1353Y 0.29 deleterious_low_confidence(0.01) benign(0.285) TCGA-EX-A1H6-01 4 77097666 77097666 C T SCARB2 Missense_Mutation p.D210N 0.26 deleterious(0.04) probably_damaging(0.945) TCGA-EX-A1H6-01 4 7967917 7967917 G A ABLIM2 3'UTR 0.23 TCGA-EX-A1H6-01 4 83345571 83345571 G C HNRNPDL 3'UTR 0.37 TCGA-EX-A1H6-01 4 8396463 8396463 G A ACOX3 Missense_Mutation p.R355C 0.24 deleterious(0) probably_damaging(1) TCGA-EX-A1H6-01 5 131823640 131823640 G A IRF1 Silent p.F55F 0.42 TCGA-EX-A1H6-01 5 139193800 139193800 C T PSD2 Silent p.L289L 0.08 TCGA-EX-A1H6-01 5 140564291 140564291 G A PCDHB16 Silent p.A719A 0.04 TCGA-EX-A1H6-01 5 140615000 140615000 G A PCDHB18 RNA 0.16 TCGA-EX-A1H6-01 5 140698604 140698604 G A TAF7 Silent p.L336L 0.19 TCGA-EX-A1H6-01 5 140737032 140737032 C T PCDHGA4 Silent p.H755H 0.23 TCGA-EX-A1H6-01 5 149213199 149213199 G A PPARGC1B Silent p.E521E 0.23 TCGA-EX-A1H6-01 5 5239294 5239294 G C ADAMTS16 Missense_Mutation p.D729H 0.21 deleterious(0.02) benign(0.326) TCGA-EX-A1H6-01 5 79041098 79041098 G A CMYA5 Missense_Mutation p.M3596I 0.08 benign(0.28) TCGA-EX-A1H6-01 6 144509081 144509081 G A STX11 3'UTR 0.10 TCGA-EX-A1H6-01 6 167708020 167708020 G A UNC93A Missense_Mutation p.E35K 0.21 tolerated(0.23) benign(0.14) TCGA-EX-A1H6-01 6 26056513 26056514 - A HIST1H1C Frame_Shift_Ins p.A49Gfs*4 0.39 TCGA-EX-A1H6-01 6 29577078 29577078 G A GABBR1 Missense_Mutation p.S596L 0.34 deleterious(0.03) probably_damaging(0.918) TCGA-EX-A1H6-01 6 53213754 53213754 C A ELOVL5 5'Flank 0.38 TCGA-EX-A1H6-01 7 100372997 100372997 G C ZAN Missense_Mutation p.D1942H 0.15 unknown(0) TCGA-EX-A1H6-01 7 112724152 112724152 C T GPR85 Missense_Mutation p.V209I 0.18 tolerated(0.92) possibly_damaging(0.701) TCGA-EX-A1H6-01 7 138455887 138455887 G T ATP6V0A4 Missense_Mutation p.Q36K 0.18 deleterious(0) possibly_damaging(0.814) TCGA-EX-A1H6-01 7 150217057 150217057 G A GIMAP7 5'UTR 0.25 TCGA-EX-A1H6-01 7 151836855 151836855 G A KMT2C Nonsense_Mutation p.R4789* 0.33 TCGA-EX-A1H6-01 7 155493752 155493753 CG - RBM33 Intron 0.16 TCGA-EX-A1H6-01 7 63726618 63726618 C T ZNF679 Nonsense_Mutation p.Q203* 0.25 TCGA-EX-A1H6-01 7 63981581 63981581 G A ZNF680 Silent p.L517L 0.29 TCGA-EX-A1H6-01 7 6474474 6474474 G T DAGLB Silent p.L199L 0.48 TCGA-EX-A1H6-01 7 77569710 77569710 C G PHTF2 Intron 0.30 TCGA-EX-A1H6-01 7 80457984 80457984 C T SEMA3C Missense_Mutation p.E61K 0.09 deleterious(0) probably_damaging(0.996) TCGA-EX-A1H6-01 7 86974548 86974548 A T CROT 5'Flank 0.27 TCGA-EX-A1H6-01 8 131127903 131127903 C G ASAP1 Missense_Mutation p.D715H 0.23 tolerated(0.2) probably_damaging(0.995) TCGA-EX-A1H6-01 8 133141782 133141782 G A KCNQ3 Silent p.I782I 0.33 TCGA-EX-A1H6-01 8 145268063 145268063 G A MROH1 Intron 0.39 TCGA-EX-A1H6-01 8 20036736 20036736 G A SLC18A1 Silent p.G128G 0.32 TCGA-EX-A1H6-01 8 22546120 22546120 C A EGR3 3'UTR 0.25 TCGA-EX-A1H6-01 8 38884227 38884227 C T ADAM9 Missense_Mutation p.S343F 0.24 deleterious(0) probably_damaging(0.998) TCGA-EX-A1H6-01 8 87591092 87591092 C T CNGB3 Splice_Site p.X643_splice 0.10 TCGA-EX-A1H6-01 9 115456478 115456478 C T INIP Missense_Mutation p.E21K 0.19 deleterious(0.01) benign(0.047) TCGA-EX-A1H6-01 9 123202133 123202133 G A CDK5RAP2 Missense_Mutation p.S1089F 0.30 deleterious(0) probably_damaging(0.982) TCGA-EX-A1H6-01 9 125377520 125377520 C T OR1Q1 Silent p.F168F 0.26 TCGA-EX-A1H6-01 9 127237855 127237855 G C GPR144 Silent p.R909R 0.35 TCGA-EX-A1H6-01 9 84607539 84607539 A T SPATA31D1 Missense_Mutation p.K718N 0.29 tolerated(0.28) benign(0.006) TCGA-EX-A1H6-01 X 100081733 100081733 C A CSTF2 Silent p.S271S 0.12 TCGA-EX-A1H6-01 X 101970963 101970963 C T GPRASP2 Missense_Mutation p.S389F 0.38 deleterious(0) probably_damaging(0.993) TCGA-EX-A1H6-01 X 104464159 104464159 C T TEX13A Silent p.E239E 0.23 TCGA-EX-A1H6-01 X 123044300 123044301 - AT XIAP 3'UTR 0.21 TCGA-EX-A1H6-01 X 153631423 153631423 C T DNASE1L1 Missense_Mutation p.D212N 0.30 deleterious(0.02) probably_damaging(0.969) TCGA-EX-A1H6-01 X 21675972 21675972 G - KLHL34 5'UTR 0.53 TCGA-EX-A1H6-01 X 38128822 38128822 C A TM4SF2 Intron 0.50 TCGA-EX-A1H6-01 X 43809004 43809004 C G NDP 3'UTR 0.19 TCGA-EX-A1H6-01 X 68381222 68381222 C T PJA1 Silent p.P620P 0.32 TCGA-EX-A1H6-01 X 70603813 70603813 T G TAF1 Missense_Mutation p.M670R 0.36 tolerated(0.19) possibly_damaging(0.58) TCGA-EX-A1H6-01 X 84569473 84569473 C T POF1B Missense_Mutation p.E308K 0.07 deleterious(0) possibly_damaging(0.742) TCGA-EX-A1H6-01 X 96171543 96171543 C T DIAPH2 Missense_Mutation p.S280F 0.33 deleterious(0) unknown(0) TCGA-EX-A3L1-01 11 103074418 103074418 G A DYNC2H1 Missense_Mutation p.E2742K 0.05 probably_damaging(0.983) TCGA-EX-A3L1-01 11 103074450 103074450 G C DYNC2H1 Missense_Mutation p.K2752N 0.06 probably_damaging(0.949) TCGA-EX-A3L1-01 11 11984832 11984832 G C DKK3 3'UTR 0.18 TCGA-EX-A3L1-01 11 22759271 22759271 G C GAS2 Missense_Mutation p.E144Q 0.15 tolerated(1) benign(0.086) TCGA-EX-A3L1-01 12 109889309 109889309 C G KCTD10 3'UTR 0.12 TCGA-EX-A3L1-01 12 43856750 43856750 C T ADAMTS20 Missense_Mutation p.C521Y 0.13 deleterious(0) probably_damaging(1) TCGA-EX-A3L1-01 12 45751137 45751137 C T ANO6 Missense_Mutation p.L331F 0.11 tolerated(1) benign(0.022) TCGA-EX-A3L1-01 12 56352275 56352278 AAAC - PMEL Frame_Shift_Del p.V150Mfs*13 0.25 TCGA-EX-A3L1-01 13 113633927 113633927 G A MCF2L Intron 0.12 TCGA-EX-A3L1-01 14 77492663 77492663 G T IRF2BPL Silent p.G491G 0.14 TCGA-EX-A3L1-01 15 63929810 63929810 G A HERC1 Silent p.I4042I 0.10 TCGA-EX-A3L1-01 15 82574925 82574925 C G FAM154B Missense_Mutation p.P240R 0.04 deleterious(0) probably_damaging(0.931) TCGA-EX-A3L1-01 15 84690198 84690198 C T ADAMTSL3 Missense_Mutation p.S1437F 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-EX-A3L1-01 16 15790663 15790663 G C NDE1 Missense_Mutation p.R298T 0.17 tolerated(0.22) possibly_damaging(0.818) TCGA-EX-A3L1-01 16 21690532 21690532 G C OTOA Missense_Mutation p.S60T 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.765) TCGA-EX-A3L1-01 16 24922824 24922824 C T SLC5A11 Silent p.C666C 0.17 TCGA-EX-A3L1-01 16 27480647 27480647 C T GTF3C1 Missense_Mutation p.R1680H 0.11 deleterious(0) probably_damaging(0.98) TCGA-EX-A3L1-01 16 3544593 3544593 C A C16orf90 Missense_Mutation p.G111C 0.12 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-EX-A3L1-01 16 69745052 69745052 C T NQO1 Missense_Mutation p.E218K 0.13 deleterious(0) probably_damaging(0.983) TCGA-EX-A3L1-01 17 33443989 33443989 G A RAD51D Missense_Mutation p.S71L 0.06 tolerated_low_confidence(0.68) unknown(0) TCGA-EX-A3L1-01 17 39134366 39134366 C T KRT40 3'UTR 0.13 TCGA-EX-A3L1-01 17 48618234 48618234 G A EPN3 Missense_Mutation p.V354I 0.34 tolerated(0.59) benign(0.001) TCGA-EX-A3L1-01 17 48696283 48696283 G A CACNA1G Missense_Mutation p.D1899N 0.09 tolerated(0.27) benign(0.001) TCGA-EX-A3L1-01 18 48603032 48603032 C T SMAD4 Nonsense_Mutation p.R445* 0.24 TCGA-EX-A3L1-01 19 15280981 15280981 C T NOTCH3 Silent p.K1705K 0.27 TCGA-EX-A3L1-01 19 16222522 16222522 T C RAB8A 5'UTR 0.14 TCGA-EX-A3L1-01 19 36169103 36169103 G A UPK1A 3'UTR 0.25 TCGA-EX-A3L1-01 19 40762875 40762875 G C AKT2 Missense_Mutation p.P45A 0.16 tolerated(0.77) benign(0.012) TCGA-EX-A3L1-01 19 9068304 9068304 G A MUC16 Missense_Mutation p.S6381L 0.22 unknown(0) TCGA-EX-A3L1-01 1 12836239 12836239 G A PRAMEF12 Missense_Mutation p.G281S 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-EX-A3L1-01 1 19439131 19439131 C T UBR4 Silent p.L3896L 0.14 TCGA-EX-A3L1-01 1 198671561 198671561 C G PTPRC Missense_Mutation p.P162R 0.30 tolerated(0.06) benign(0.052) TCGA-EX-A3L1-01 1 45216175 45216175 G A KIF2C Silent p.E126E 0.21 TCGA-EX-A3L1-01 1 55315435 55315435 C T DHCR24 3'UTR 0.09 TCGA-EX-A3L1-01 1 70385093 70385093 C T LRRC7 Intron 0.15 TCGA-EX-A3L1-01 1 7895971 7895971 G T PER3 Nonsense_Mutation p.E1113* 0.17 TCGA-EX-A3L1-01 20 33855066 33855066 G A MMP24 Silent p.R346R 0.16 TCGA-EX-A3L1-01 22 18609310 18609310 C T TUBA8 Silent p.L189L 0.09 TCGA-EX-A3L1-01 22 38130892 38130892 G C TRIOBP Missense_Mutation p.E1517Q 0.22 tolerated_low_confidence(0.24) benign(0.045) TCGA-EX-A3L1-01 2 178481464 178481464 A G TTC30A Silent p.L656L 0.17 TCGA-EX-A3L1-01 2 215835046 215835046 G A ABCA12 Nonsense_Mutation p.R1881* 0.15 TCGA-EX-A3L1-01 2 241689930 241689930 C T KIF1A Missense_Mutation p.V965I 0.06 tolerated(0.08) benign(0.392) TCGA-EX-A3L1-01 2 39250193 39250193 C G SOS1 Missense_Mutation p.R459T 0.06 deleterious(0) probably_damaging(0.995) TCGA-EX-A3L1-01 2 75101407 75101407 G T HK2 Missense_Mutation p.A236S 0.36 tolerated(0.06) probably_damaging(0.988) TCGA-EX-A3L1-01 2 95847189 95847189 G A ZNF2 Missense_Mutation p.E206K 0.36 deleterious(0.03) possibly_damaging(0.901) TCGA-EX-A3L1-01 3 130367926 130367926 C T COL6A6 Silent p.C1751C 0.38 TCGA-EX-A3L1-01 3 154032945 154032945 G A DHX36 Nonsense_Mutation p.R165* 0.35 TCGA-EX-A3L1-01 4 114823522 114823522 C G ARSJ Missense_Mutation p.E570Q 0.20 tolerated_low_confidence(0.41) benign(0.403) TCGA-EX-A3L1-01 4 152054300 152054300 C G SH3D19 Missense_Mutation p.E602Q 0.29 deleterious(0.04) probably_damaging(0.988) TCGA-EX-A3L1-01 5 167894925 167894925 C T WWC1 Silent p.L1083L 0.30 TCGA-EX-A3L1-01 5 21751392 21751392 A C CDH12 3'UTR 0.07 TCGA-EX-A3L1-01 5 42719441 42719441 C T GHR Missense_Mutation p.A611V 0.33 deleterious(0.02) possibly_damaging(0.881) TCGA-EX-A3L1-01 5 52347307 52347307 G C ITGA2 Missense_Mutation p.E233Q 0.11 tolerated(0.07) benign(0.067) TCGA-EX-A3L1-01 6 100896461 100896461 C T SIM1 Missense_Mutation p.V213M 0.35 deleterious(0.03) probably_damaging(0.988) TCGA-EX-A3L1-01 6 75843579 75843579 C T COL12A1 Missense_Mutation p.E1887K 0.22 probably_damaging(0.998) TCGA-EX-A3L1-01 7 46728852 46728852 G T AC011294.3 3'UTR 0.21 TCGA-EX-A3L1-01 7 82387866 82387866 C A PCLO 3'UTR 0.14 TCGA-EX-A3L1-01 8 20036931 20036931 G A SLC18A1 Silent p.L63L 0.29 TCGA-EX-A3L1-01 9 123877440 123877440 G A CNTRL Missense_Mutation p.E473K 0.29 probably_damaging(0.999) TCGA-EX-A3L1-01 9 36338822 36338822 A G RNF38 3'UTR 0.08 TCGA-EX-A3L1-01 9 39361204 39361204 G A SPATA31A1 Missense_Mutation p.V1148I 0.20 tolerated(0.43) benign(0.002) TCGA-EX-A3L1-01 X 46917566 46917566 C T JADE3 Intron 0.12 TCGA-EX-A449-01 10 101577118 101577118 G A ABCC2 Silent p.K716K 0.48 TCGA-EX-A449-01 11 20676303 20676303 C A SLC6A5 Missense_Mutation p.F761L 0.07 tolerated(0.06) benign(0.032) TCGA-EX-A449-01 11 57576862 57576862 G A CTNND1 Missense_Mutation p.A787T 0.52 tolerated(1) benign(0.109) TCGA-EX-A449-01 11 93104221 93104221 C T CCDC67 Silent p.Y188Y 0.37 TCGA-EX-A449-01 12 2786273 2786273 C T CACNA1C Silent p.T1662T 0.67 TCGA-EX-A449-01 12 3390479 3390479 C T TSPAN9 Missense_Mutation p.T183M 0.39 tolerated(0.11) possibly_damaging(0.505) TCGA-EX-A449-01 12 81503375 81503375 C T ACSS3 Silent p.A116A 0.07 TCGA-EX-A449-01 13 112723301 112723301 C T SOX1 3'UTR 0.42 TCGA-EX-A449-01 13 88330416 88330416 G T SLITRK5 Missense_Mutation p.V925L 0.36 tolerated(0.2) benign(0.225) TCGA-EX-A449-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.36 deleterious(0) probably_damaging(0.999) TCGA-EX-A449-01 14 20444114 20444114 G A OR4K15 Missense_Mutation p.R146H 0.43 deleterious(0) benign(0.165) TCGA-EX-A449-01 15 20663160 20663160 G A HERC2P3 RNA 0.26 TCGA-EX-A449-01 15 28263672 28263672 C T OCA2 Silent p.T226T 0.37 TCGA-EX-A449-01 15 42059849 42059849 G A MGA 3'UTR 0.47 TCGA-EX-A449-01 16 617602 617602 C T NHLRC4 5'UTR 0.37 TCGA-EX-A449-01 17 10216514 10216514 G A MYH13 Missense_Mutation p.T1381M 0.41 deleterious(0) benign(0.045) TCGA-EX-A449-01 17 10707112 10707112 G T LINC00675 RNA 0.33 TCGA-EX-A449-01 17 37343054 37343054 G A CACNB1 Silent p.L181L 0.53 TCGA-EX-A449-01 18 60795160 60795160 T C BCL2 3'UTR 0.56 TCGA-EX-A449-01 19 50548323 50548323 C A ZNF473 Missense_Mutation p.P208Q 0.44 tolerated(0.1) probably_damaging(0.937) TCGA-EX-A449-01 19 55284906 55284906 G C KIR2DL1 Silent p.G64G 0.51 TCGA-EX-A449-01 19 57132752 57132752 C T ZNF71 Missense_Mutation p.P33S 0.35 tolerated(0.72) benign(0) TCGA-EX-A449-01 19 5788165 5788165 C T DUS3L Missense_Mutation p.R322Q 0.16 deleterious(0) probably_damaging(1) TCGA-EX-A449-01 1 11190804 11190804 C T MTOR Missense_Mutation p.E1799K 0.43 tolerated(0.08) probably_damaging(0.996) TCGA-EX-A449-01 1 1215967 1215967 C - SCNN1D 5'UTR 0.30 TCGA-EX-A449-01 1 201031122 201031122 G A CACNA1S Silent p.L1001L 0.26 TCGA-EX-A449-01 1 27100152 27100152 G - ARID1A Frame_Shift_Del p.M1318Cfs*163 0.30 TCGA-EX-A449-01 20 44259775 44259775 G A WFDC10A 3'UTR 0.44 TCGA-EX-A449-01 22 21369471 21369471 C T P2RX6 Missense_Mutation p.P3L 0.12 tolerated_low_confidence(0.42) benign(0.001) TCGA-EX-A449-01 22 26219554 26219554 G A MYO18B Silent p.T868T 0.51 TCGA-EX-A449-01 2 119915184 119915184 G A C1QL2 Missense_Mutation p.A221V 0.32 tolerated(0.36) benign(0.393) TCGA-EX-A449-01 2 219001195 219001195 G A CXCR2 3'UTR 0.50 TCGA-EX-A449-01 2 71817400 71817400 G A DYSF Missense_Mutation p.D1186N 0.43 deleterious(0.01) probably_damaging(0.99) TCGA-EX-A449-01 3 39226043 39226043 C T XIRP1 Missense_Mutation p.E1632K 0.07 deleterious(0) possibly_damaging(0.516) TCGA-EX-A449-01 3 49831352 49831352 G A CDHR4 Missense_Mutation p.A456V 0.36 deleterious(0.03) benign(0.22) TCGA-EX-A449-01 4 115858509 115858509 G A NDST4 Missense_Mutation p.R458W 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-EX-A449-01 4 126408724 126408724 A G FAT4 Silent p.G4347G 0.44 TCGA-EX-A449-01 4 158060051 158060051 A G GLRB Missense_Mutation p.K234R 0.33 tolerated(0.65) benign(0.002) TCGA-EX-A449-01 4 164394850 164394850 C T TKTL2 Missense_Mutation p.V13M 0.31 tolerated(0.06) benign(0.19) TCGA-EX-A449-01 4 40045490 40045490 G C RP11-333E13.4 RNA 0.46 TCGA-EX-A449-01 4 762112 762112 G A PCGF3 3'UTR 0.42 TCGA-EX-A449-01 4 83601868 83601868 G A SCD5 Silent p.I187I 0.26 TCGA-EX-A449-01 5 140745607 140745607 C T PCDHGA5 Silent p.D570D 0.32 TCGA-EX-A449-01 6 52852197 52852197 C A GSTA4 Nonsense_Mutation p.E33* 0.45 TCGA-EX-A449-01 7 6441974 6441974 C T RAC1 Missense_Mutation p.A178V 0.30 deleterious(0) probably_damaging(0.986) TCGA-EX-A449-01 7 75988247 75988247 C T YWHAG 5'UTR 0.59 TCGA-EX-A449-01 8 21996983 21996983 G T REEP4 Missense_Mutation p.F121L 0.26 tolerated(0.32) benign(0.005) TCGA-EX-A449-01 8 25701966 25701966 G T EBF2 3'UTR 0.32 TCGA-EX-A449-01 8 61735064 61735064 G A CHD7 Missense_Mutation p.R987Q 0.23 probably_damaging(0.996) TCGA-EX-A449-01 8 6420530 6420530 G A ANGPT2 5'UTR 0.40 TCGA-EX-A449-01 9 104356772 104356772 G A PPP3R2 Silent p.G147G 0.33 TCGA-EX-A449-01 X 153409724 153409724 C T OPN1LW 5'UTR 0.42 TCGA-EX-A449-01 X 18800495 18800495 C T PPEF1 Missense_Mutation p.T246M 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-EX-A449-01 X 34961911 34961911 G A FAM47B Silent p.P321P 0.47 TCGA-EX-A69L-01 10 103563732 103563732 C G MGEA5 Missense_Mutation p.E266Q 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-EX-A69L-01 10 30336765 30336765 C T KIAA1462 5'UTR 0.22 TCGA-EX-A69L-01 10 76789437 76789437 G A KAT6B Missense_Mutation p.V1619I 0.25 probably_damaging(0.986) TCGA-EX-A69L-01 10 89727351 89727351 C A PTEN 3'UTR 0.18 TCGA-EX-A69L-01 11 119003445 119003445 C T HINFP Missense_Mutation p.R277C 0.44 deleterious(0) probably_damaging(1) TCGA-EX-A69L-01 11 4929287 4929287 T C OR51A7 Silent p.L230L 0.29 TCGA-EX-A69L-01 11 76253261 76253261 C T C11orf30 Silent p.V853V 0.19 TCGA-EX-A69L-01 11 77436745 77436745 C G RSF1 Splice_Site p.X193_splice 0.16 TCGA-EX-A69L-01 12 4737915 4737915 C T AKAP3 Silent p.K51K 0.26 TCGA-EX-A69L-01 12 49413286 49413286 C A KMT2D 3'UTR 0.27 TCGA-EX-A69L-01 14 35742866 35742866 G A KIAA0391 3'UTR 0.25 TCGA-EX-A69L-01 14 35872491 35872491 C G NFKBIA Missense_Mutation p.E138Q 0.51 tolerated(0.11) possibly_damaging(0.731) TCGA-EX-A69L-01 14 45464961 45464961 G A FAM179B Missense_Mutation p.D687N 0.16 tolerated(0.07) benign(0.219) TCGA-EX-A69L-01 14 55818715 55818715 C G FBXO34 Missense_Mutation p.S536C 0.24 tolerated(0.05) possibly_damaging(0.839) TCGA-EX-A69L-01 14 69967295 69967295 G A PLEKHD1 Missense_Mutation p.G82D 0.05 deleterious(0.01) probably_damaging(1) TCGA-EX-A69L-01 14 75151319 75151319 T A AREL1 Silent p.A27A 0.43 TCGA-EX-A69L-01 15 23890185 23890185 G A MAGEL2 Missense_Mutation p.T299M 0.16 tolerated(0.51) benign(0.001) TCGA-EX-A69L-01 15 42058656 42058656 G T MGA Silent p.L2792L 0.28 TCGA-EX-A69L-01 15 86290827 86290827 C G AKAP13 3'Flank 0.22 TCGA-EX-A69L-01 16 11009489 11009489 C T CIITA Missense_Mutation p.S984F 0.24 deleterious(0.02) possibly_damaging(0.905) TCGA-EX-A69L-01 16 28877623 28877623 G C SH2B1 Missense_Mutation p.E70Q 0.17 tolerated(0.28) probably_damaging(0.998) TCGA-EX-A69L-01 16 5041910 5041910 G A SEC14L5 Silent p.T182T 0.31 TCGA-EX-A69L-01 16 88898465 88898465 C G GALNS Missense_Mutation p.E315Q 0.30 deleterious(0) probably_damaging(0.983) TCGA-EX-A69L-01 16 89930239 89930239 C T SPIRE2 Missense_Mutation p.S583L 0.16 deleterious(0) possibly_damaging(0.498) TCGA-EX-A69L-01 17 11622753 11622753 C T DNAH9 Silent p.R1885R 0.25 TCGA-EX-A69L-01 17 40133891 40133891 C T DNAJC7 Missense_Mutation p.E456K 0.39 tolerated(0.33) benign(0.017) TCGA-EX-A69L-01 17 43912701 43912701 C - CRHR1 3'UTR 0.18 TCGA-EX-A69L-01 17 56499592 56499592 C T HSF5 3'UTR 0.38 TCGA-EX-A69L-01 17 7533799 7533799 G C SHBG Missense_Mutation p.M59I 0.21 tolerated(0.34) benign(0.088) TCGA-EX-A69L-01 17 77921464 77921464 C G TBC1D16 Missense_Mutation p.E570Q 0.36 tolerated(0.14) probably_damaging(0.979) TCGA-EX-A69L-01 18 2544664 2544664 G A METTL4 Missense_Mutation p.A390V 0.39 tolerated(0.28) benign(0.003) TCGA-EX-A69L-01 18 74536255 74536255 G T ZNF236 5'UTR 0.31 TCGA-EX-A69L-01 19 19466095 19466095 C T MAU2 Silent p.N554N 0.27 TCGA-EX-A69L-01 19 34263476 34263476 C T CHST8 Silent p.F261F 0.24 TCGA-EX-A69L-01 19 36134313 36134313 G A ETV2 Missense_Mutation p.E125K 0.26 deleterious(0.01) benign(0.225) TCGA-EX-A69L-01 19 44096997 44096997 G A IRGQ Silent p.G351G 0.31 TCGA-EX-A69L-01 19 49404117 49404117 C T NUCB1 Missense_Mutation p.R22C 0.18 tolerated(0.15) benign(0.183) TCGA-EX-A69L-01 19 54848713 54848713 C T LILRA4 Missense_Mutation p.E304K 0.28 tolerated(0.1) benign(0.081) TCGA-EX-A69L-01 19 59010279 59010279 C G SLC27A5 Missense_Mutation p.C590S 0.34 tolerated(0.38) possibly_damaging(0.717) TCGA-EX-A69L-01 1 198288708 198288708 C T NEK7 3'UTR 0.24 TCGA-EX-A69L-01 1 19981629 19981629 G A MINOS1-NBL1 Missense_Mutation p.E36K 0.24 tolerated(0.21) probably_damaging(0.992) TCGA-EX-A69L-01 1 216138814 216138814 T C USH2A Missense_Mutation p.N2322S 0.62 benign(0.024) TCGA-EX-A69L-01 1 229730463 229730463 G C TAF5L Missense_Mutation p.R451G 0.67 deleterious(0) probably_damaging(0.993) TCGA-EX-A69L-01 1 35260438 35260438 C T GJA4 Silent p.I208I 0.28 TCGA-EX-A69L-01 1 75038598 75038598 C T C1orf173 Silent p.E932E 0.48 TCGA-EX-A69L-01 20 23666568 23666568 C T CST4 Missense_Mutation p.R130K 0.26 tolerated(1) benign(0.001) TCGA-EX-A69L-01 20 33128384 33128384 G T DYNLRB1 Splice_Site p.X83_splice 0.25 TCGA-EX-A69L-01 20 43255112 43255112 G A ADA Missense_Mutation p.P116L 0.24 deleterious(0.01) possibly_damaging(0.886) TCGA-EX-A69L-01 20 44238877 44238877 T C WFDC9 Intron 0.23 TCGA-EX-A69L-01 20 47361648 47361648 G A PREX1 Missense_Mutation p.H110Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-EX-A69L-01 20 62178640 62178640 G C SRMS Silent p.L59L 0.17 TCGA-EX-A69L-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.35 deleterious(0) possibly_damaging(0.835) TCGA-EX-A69L-01 22 37420682 37420682 C T MPST Silent p.L162L 0.31 TCGA-EX-A69L-01 22 38204039 38204039 C T GCAT Missense_Mutation p.S22L 0.34 deleterious_low_confidence(0.01) benign(0.284) TCGA-EX-A69L-01 2 202137499 202137499 G C CASP8 Missense_Mutation p.E243Q 0.40 tolerated(0.12) benign(0.124) TCGA-EX-A69L-01 2 272070 272070 G C ACP1 Intron 0.30 TCGA-EX-A69L-01 3 126755394 126755394 C T PLXNA1 3'UTR 0.31 TCGA-EX-A69L-01 3 137981347 137981347 C G NME9 3'UTR 0.10 TCGA-EX-A69L-01 3 160142730 160142730 G A SMC4 Missense_Mutation p.E801K 0.10 deleterious(0) possibly_damaging(0.665) TCGA-EX-A69L-01 3 184107221 184107221 G C CHRD 3'UTR 0.20 TCGA-EX-A69L-01 3 186917887 186917887 G A RTP1 3'UTR 0.14 TCGA-EX-A69L-01 3 49694574 49694574 C T BSN Missense_Mutation p.R2529W 0.45 unknown(0) TCGA-EX-A69L-01 3 88041316 88041316 C G HTR1F 3'UTR 0.42 TCGA-EX-A69L-01 4 159634413 159634413 C T PPID Splice_Site p.X251_splice 0.32 TCGA-EX-A69L-01 4 22415240 22415240 C T GPR125 Silent p.V669V 0.35 TCGA-EX-A69L-01 5 108436119 108436119 G T FER Silent p.L649L 0.34 TCGA-EX-A69L-01 5 1341804 1341804 G A CLPTM1L Silent p.T145T 0.44 TCGA-EX-A69L-01 5 140554925 140554925 C G PCDHB7 3'UTR 0.08 TCGA-EX-A69L-01 5 148695471 148695471 G A AFAP1L1 Missense_Mutation p.D370N 0.33 tolerated(0.06) benign(0.089) TCGA-EX-A69L-01 5 150884312 150884312 G A FAT2 3'UTR 0.18 TCGA-EX-A69L-01 5 154280965 154280965 G C GEMIN5 Missense_Mutation p.S983C 0.57 deleterious(0) probably_damaging(0.993) TCGA-EX-A69L-01 5 79809458 79809458 C G FAM151B Missense_Mutation p.P63A 0.14 tolerated(0.28) benign(0.006) TCGA-EX-A69L-01 6 134212865 134212865 G T TCF21 Missense_Mutation p.M155I 0.26 tolerated(0.14) benign(0.001) TCGA-EX-A69L-01 6 160906846 160906846 C T LPAL2 Intron 0.29 TCGA-EX-A69L-01 6 29911898 29911898 G A HLA-A Splice_Site p.X207_splice 0.33 TCGA-EX-A69L-01 6 31827564 31827564 C T NEU1 Missense_Mutation p.E394K 0.35 deleterious(0) probably_damaging(0.999) TCGA-EX-A69L-01 6 33384736 33384762 GTTTTAATCATCTAAGGGACAAAGATA TTGAATC CUTA Splice_Site p.X141_splice 0.17 TCGA-EX-A69L-01 6 34261289 34261289 C T NUDT3 Silent p.T93T 0.24 TCGA-EX-A69L-01 6 43406530 43406530 C G ABCC10 Silent p.L708L 0.29 TCGA-EX-A69L-01 6 44275188 44275188 C T AARS2 Intron 0.36 TCGA-EX-A69L-01 6 49403181 49403181 C T MUT Silent p.V704V 0.22 TCGA-EX-A69L-01 6 54080076 54080076 C T MLIP Intron 0.46 TCGA-EX-A69L-01 7 148495070 148495070 G A CUL1 Silent p.L663L 0.31 TCGA-EX-A69L-01 7 148523576 148523576 C G EZH2 Missense_Mutation p.D293H 0.29 deleterious(0) probably_damaging(1) TCGA-EX-A69L-01 7 151833837 151833837 C T KMT2C 3'UTR 0.23 TCGA-EX-A69L-01 7 5568000 5568000 C G ACTB Missense_Mutation p.K238N 0.28 deleterious_low_confidence(0.04) benign(0.011) TCGA-EX-A69L-01 7 75182881 75182881 G A HIP1 Silent p.T722T 0.27 TCGA-EX-A69L-01 8 116421049 116421049 C T TRPS1 3'UTR 0.27 TCGA-EX-A69L-01 9 135205161 135205161 C G SETX Silent p.L608L 0.31 TCGA-EX-A69L-01 9 95608983 95608983 C T ZNF484 Missense_Mutation p.E698K 0.25 tolerated(0.41) benign(0.445) TCGA-EX-A69L-01 X 108696806 108696806 G A GUCY2F Missense_Mutation p.H439Y 0.34 tolerated(0.06) benign(0.255) TCGA-EX-A69L-01 X 119004829 119004829 C G RNF113A Missense_Mutation p.E250Q 0.32 deleterious(0) possibly_damaging(0.529) TCGA-EX-A69L-01 X 153698895 153698895 G T PLXNA3 Missense_Mutation p.E1699D 0.28 tolerated(0.48) probably_damaging(0.996) TCGA-EX-A69L-01 X 3242249 3242249 C T MXRA5 Missense_Mutation p.E493K 0.33 tolerated(0.1) probably_damaging(0.999) TCGA-EX-A69L-01 X 70390931 70390931 T G NLGN3 3'Flank 0.26 TCGA-EX-A69L-01 X 91875546 91875546 G A PCDH11X 3'UTR 0.43 TCGA-EX-A69M-01 10 126714653 126714653 G A CTBP2 Missense_Mutation p.P559L 0.46 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EX-A69M-01 10 299393 299393 C T ZMYND11 3'UTR 0.34 TCGA-EX-A69M-01 10 87628819 87628819 C T GRID1 Missense_Mutation p.R300H 0.33 deleterious(0.02) possibly_damaging(0.9) TCGA-EX-A69M-01 11 124293926 124293926 A G OR8B4 Missense_Mutation p.V281A 0.55 deleterious_low_confidence(0.02) possibly_damaging(0.61) TCGA-EX-A69M-01 11 36057766 36057766 G A LDLRAD3 Missense_Mutation p.D54N 0.45 deleterious(0.04) possibly_damaging(0.615) TCGA-EX-A69M-01 11 56949718 56949718 C A LRRC55 Missense_Mutation p.H117Q 0.27 deleterious(0.03) probably_damaging(0.994) TCGA-EX-A69M-01 11 56949719 56949719 A G LRRC55 Missense_Mutation p.N118D 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-EX-A69M-01 11 58920144 58920144 G T FAM111A Missense_Mutation p.G335W 0.31 deleterious(0) benign(0.435) TCGA-EX-A69M-01 11 62747277 62747277 C T SLC22A6 Missense_Mutation p.R394H 0.33 deleterious(0) probably_damaging(1) TCGA-EX-A69M-01 12 117476893 117476893 C T TESC 3'UTR 0.37 TCGA-EX-A69M-01 13 98652882 98652882 T C IPO5 Missense_Mutation p.M382T 0.27 tolerated(0.1) benign(0.138) TCGA-EX-A69M-01 14 102514296 102514296 C T DYNC1H1 Silent p.T4383T 0.31 TCGA-EX-A69M-01 14 102552169 102552169 G A HSP90AA1 Missense_Mutation p.T274I 0.42 tolerated_low_confidence(0.06) possibly_damaging(0.882) TCGA-EX-A69M-01 14 104559921 104559921 C A ASPG Nonsense_Mutation p.C95* 0.34 TCGA-EX-A69M-01 14 70235906 70235906 C T SRSF5 Missense_Mutation p.P102S 0.29 deleterious(0.01) probably_damaging(0.921) TCGA-EX-A69M-01 14 73578379 73578379 G C RBM25 Missense_Mutation p.D721H 0.29 possibly_damaging(0.861) TCGA-EX-A69M-01 15 100211754 100211754 C T MEF2A Silent p.C96C 0.28 TCGA-EX-A69M-01 15 37391329 37391329 G C MEIS2 Intron 0.26 TCGA-EX-A69M-01 15 40660964 40660964 C T DISP2 Missense_Mutation p.P884L 0.27 tolerated(0.3) benign(0.003) TCGA-EX-A69M-01 15 48729976 48729976 G A FBN1 Missense_Mutation p.T2101M 0.33 benign(0.313) TCGA-EX-A69M-01 16 20974746 20974746 G T DNAH3 Missense_Mutation p.A3487E 0.48 deleterious(0) probably_damaging(0.997) TCGA-EX-A69M-01 16 66881082 66881082 A G CA7 Missense_Mutation p.N64D 0.54 deleterious(0.02) possibly_damaging(0.838) TCGA-EX-A69M-01 16 67100636 67100636 G A CBFB Missense_Mutation p.G112S 0.55 deleterious(0) probably_damaging(0.971) TCGA-EX-A69M-01 17 18638256 18638256 G A TRIM16L Missense_Mutation p.R177H 0.54 tolerated(0.13) benign(0.072) TCGA-EX-A69M-01 17 42636381 42636381 G A FZD2 Missense_Mutation p.R442H 0.55 deleterious(0.02) probably_damaging(1) TCGA-EX-A69M-01 17 56083298 56083298 T C SRSF1 Missense_Mutation p.D139G 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-EX-A69M-01 17 73751271 73751271 C T ITGB4 Intron 0.51 TCGA-EX-A69M-01 18 63511149 63511149 G A CDH7 Silent p.T361T 0.23 TCGA-EX-A69M-01 19 1207065 1207065 G - STK11 Frame_Shift_Del p.D53Tfs*11 0.42 TCGA-EX-A69M-01 19 45295767 45295767 G A CBLC Nonsense_Mutation p.W378* 0.42 TCGA-EX-A69M-01 19 45895174 45895174 C T PPP1R13L Silent p.P593P 0.36 TCGA-EX-A69M-01 19 56133152 56133153 CC - ZNF784 Frame_Shift_Del p.E313Dfs*21 0.36 TCGA-EX-A69M-01 19 58420942 58420942 G C ZNF417 Missense_Mutation p.T235S 0.41 tolerated(0.34) benign(0) TCGA-EX-A69M-01 1 16464648 16464648 C T EPHA2 Missense_Mutation p.V338M 0.30 tolerated(0.13) benign(0.007) TCGA-EX-A69M-01 1 20518122 20518122 C T UBXN10 3'UTR 0.46 TCGA-EX-A69M-01 1 220231520 220231521 - A BPNT1 3'UTR 0.09 TCGA-EX-A69M-01 1 226819533 226819533 T - ITPKB 3'UTR 0.10 TCGA-EX-A69M-01 1 233482309 233482309 C A MLK4 Silent p.A309A 0.18 TCGA-EX-A69M-01 1 27440643 27440643 G A SLC9A1 Missense_Mutation p.L163F 0.38 deleterious(0.03) benign(0.311) TCGA-EX-A69M-01 1 27720295 27720295 C T GPR3 Intron 0.34 TCGA-EX-A69M-01 1 33246734 33246740 TTGGCCA - YARS Frame_Shift_Del p.M350Kfs*38 0.23 TCGA-EX-A69M-01 1 36387423 36387423 G A AGO1 3'UTR 0.45 TCGA-EX-A69M-01 1 56961526 56961526 A T PPAP2B 3'UTR 0.23 TCGA-EX-A69M-01 1 85555822 85555822 C T WDR63 Missense_Mutation p.T255M 0.42 deleterious(0.01) probably_damaging(0.915) TCGA-EX-A69M-01 21 31988847 31988847 G A KRTAP20-1 Missense_Mutation p.R25H 0.25 unknown(0) TCGA-EX-A69M-01 22 22280022 22280022 C T PPM1F Missense_Mutation p.R302H 0.26 deleterious(0) probably_damaging(1) TCGA-EX-A69M-01 22 26937652 26937652 G A TPST2 5'UTR 0.45 TCGA-EX-A69M-01 22 30415898 30415898 G A MTMR3 Silent p.L750L 0.40 TCGA-EX-A69M-01 2 176948343 176948343 C T EVX2 Silent p.P54P 0.33 TCGA-EX-A69M-01 2 196753575 196753575 T A DNAH7 Missense_Mutation p.Q1726L 0.52 deleterious(0.02) benign(0.027) TCGA-EX-A69M-01 2 20870986 20870986 C A GDF7 Missense_Mutation p.P385H 0.28 deleterious(0) probably_damaging(0.997) TCGA-EX-A69M-01 2 219499242 219499242 G A PLCD4 Silent p.Q595Q 0.37 TCGA-EX-A69M-01 2 24307270 24307270 G A TP53I3 5'UTR 0.15 TCGA-EX-A69M-01 2 26150648 26150649 - T KIF3C 3'UTR 0.11 TCGA-EX-A69M-01 2 39185251 39185251 G T ARHGEF33 Missense_Mutation p.G483C 0.33 deleterious_low_confidence(0) benign(0.009) TCGA-EX-A69M-01 2 98779316 98779316 G A VWA3B Missense_Mutation p.A331T 0.30 tolerated(0.08) possibly_damaging(0.677) TCGA-EX-A69M-01 3 159482297 159482297 C T IQCJ-SCHIP1 Silent p.A119A 0.20 TCGA-EX-A69M-01 3 23631409 23631409 T G UBE2E2 3'UTR 0.29 TCGA-EX-A69M-01 3 37792021 37792021 A T ITGA9 Silent p.S834S 0.33 TCGA-EX-A69M-01 3 5220720 5220720 C T ARL8B 3'UTR 0.39 TCGA-EX-A69M-01 3 64536721 64536721 G A ADAMTS9 Silent p.G1572G 0.30 TCGA-EX-A69M-01 4 113437179 113437181 CGG - NEUROG2 5'UTR 0.10 TCGA-EX-A69M-01 4 154624095 154624095 G A TLR2 Silent p.G12G 0.37 TCGA-EX-A69M-01 4 82126091 82126091 C A PRKG2 Missense_Mutation p.L37F 0.36 deleterious(0.02) benign(0.399) TCGA-EX-A69M-01 5 101834431 101834431 T C SLCO6A1 Missense_Mutation p.K40E 0.29 tolerated(0.91) benign(0.077) TCGA-EX-A69M-01 5 137843272 137843272 C G ETF1 3'UTR 0.22 TCGA-EX-A69M-01 5 140555400 140555400 C A PCDHB7 3'UTR 0.04 TCGA-EX-A69M-01 5 177031510 177031510 C T B4GALT7 Silent p.H127H 0.15 TCGA-EX-A69M-01 5 40728489 40728489 C T TTC33 Silent p.Q131Q 0.41 TCGA-EX-A69M-01 5 6755690 6755690 T C PAPD7 3'UTR 0.24 TCGA-EX-A69M-01 5 70785228 70785228 C T BDP1 Intron 0.33 TCGA-EX-A69M-01 6 149997697 149997697 G A LATS1 Nonsense_Mutation p.R924* 0.26 TCGA-EX-A69M-01 6 168396931 168396931 A T KIF25 5'Flank 0.34 TCGA-EX-A69M-01 6 25042141 25042141 G A RP11-367G6.3 RNA 0.27 TCGA-EX-A69M-01 6 26158407 26158407 C T HIST1H2BD Missense_Mutation p.P4S 0.22 tolerated_low_confidence(0.11) benign(0.132) TCGA-EX-A69M-01 6 33245262 33245262 C T B3GALT4 Silent p.L22L 0.28 TCGA-EX-A69M-01 7 27145835 27145835 A T HOXA3 3'UTR 0.38 TCGA-EX-A69M-01 7 2740156 2740156 C T AMZ1 Missense_Mutation p.T24I 0.35 deleterious(0.02) benign(0.024) TCGA-EX-A69M-01 9 130457376 130457376 G A STXBP1 3'Flank 0.30 TCGA-EX-A69M-01 9 91964815 91964815 C G SECISBP2 Missense_Mutation p.F621L 0.24 tolerated(1) benign(0.004) TCGA-EX-A69M-01 X 15444055 15444055 G A PIR Missense_Mutation p.A180V 0.34 deleterious(0.01) possibly_damaging(0.869) TCGA-EX-A69M-01 X 84362391 84362391 G A SATL1 Silent p.Y528Y 0.38 TCGA-EX-A8YF-01 11 107219759 107219759 G A CWF19L2 Silent p.N702N 0.06 TCGA-EX-A8YF-01 11 118997679 118997679 C G HINFP Missense_Mutation p.R9G 0.28 tolerated(0.12) benign(0.007) TCGA-EX-A8YF-01 11 119210110 119210110 G A C1QTNF5 Silent p.I221I 0.32 TCGA-EX-A8YF-01 11 124972577 124972583 AAAGCAG - TMEM218 Intron 0.20 TCGA-EX-A8YF-01 11 1262391 1262391 C T MUC5B Silent p.C1427C 0.36 TCGA-EX-A8YF-01 11 132206394 132206394 G A NTM 3'Flank 0.29 TCGA-EX-A8YF-01 11 68201238 68201238 T C LRP5 Missense_Mutation p.V1311A 0.28 deleterious(0) possibly_damaging(0.626) TCGA-EX-A8YF-01 12 102869449 102869449 G A IGF1 Silent p.F64F 0.41 TCGA-EX-A8YF-01 12 14959023 14959023 G A SMCO3 Missense_Mutation p.H198Y 0.17 tolerated(0.07) probably_damaging(0.994) TCGA-EX-A8YF-01 12 53298541 53298541 G A KRT8 Silent p.P103P 0.20 TCGA-EX-A8YF-01 14 23896511 23896511 C T MYH7 Missense_Mutation p.E632K 0.45 tolerated(0.2) benign(0.001) TCGA-EX-A8YF-01 15 102496074 102496074 G A FAM138E RNA 0.20 TCGA-EX-A8YF-01 15 45394123 45394124 - A DUOX2 Frame_Shift_Ins p.M907Yfs*26 0.23 TCGA-EX-A8YF-01 15 74043579 74043579 G A C15orf59 5'UTR 0.29 TCGA-EX-A8YF-01 15 78557081 78557081 C T DNAJA4 Intron 0.32 TCGA-EX-A8YF-01 16 24802084 24802084 T G TNRC6A Missense_Mutation p.I707M 0.32 tolerated(0.08) possibly_damaging(0.901) TCGA-EX-A8YF-01 16 9916149 9916149 C T GRIN2A Missense_Mutation p.E714K 0.25 deleterious(0.02) benign(0.168) TCGA-EX-A8YF-01 17 43180396 43180396 G A NMT1 Silent p.L357L 0.32 TCGA-EX-A8YF-01 17 76803695 76803695 C T USP36 Silent p.K477K 0.22 TCGA-EX-A8YF-01 18 33607018 33607018 G A RPRD1A Missense_Mutation p.L212F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EX-A8YF-01 19 21132647 21132647 G A ZNF85 Missense_Mutation p.E443K 0.20 tolerated(1) benign(0) TCGA-EX-A8YF-01 1 111441803 111441803 A C CD53 Missense_Mutation p.T216P 0.19 tolerated(0.15) benign(0.019) TCGA-EX-A8YF-01 1 120927213 120927215 TCT - FCGR1B In_Frame_Del p.E256del 0.14 TCGA-EX-A8YF-01 1 154543994 154543994 G A CHRNB2 Missense_Mutation p.R232H 0.43 deleterious(0.01) possibly_damaging(0.806) TCGA-EX-A8YF-01 1 169961327 169961327 G C KIFAP3 Nonsense_Mutation p.S418* 0.46 TCGA-EX-A8YF-01 1 170514051 170514051 C T GORAB Intron 0.33 TCGA-EX-A8YF-01 1 204394056 204394056 C T PIK3C2B Missense_Mutation p.R1610H 0.29 tolerated(0.15) benign(0.005) TCGA-EX-A8YF-01 1 236907948 236907948 G C ACTN2 Missense_Mutation p.Q426H 0.15 tolerated(0.06) benign(0.026) TCGA-EX-A8YF-01 1 25717277 25717277 C A RHCE Missense_Mutation p.G255V 0.23 tolerated(0.81) benign(0.001) TCGA-EX-A8YF-01 1 38155534 38155534 G A C1orf109 Silent p.L7L 0.26 TCGA-EX-A8YF-01 1 47843270 47843271 - T CMPK1 3'UTR 0.11 TCGA-EX-A8YF-01 1 67880963 67880963 C T SERBP1 Silent p.T352T 0.14 TCGA-EX-A8YF-01 20 30780769 30780769 C T PLAGL2 3'UTR 0.28 TCGA-EX-A8YF-01 20 31388010 31388010 C T DNMT3B Missense_Mutation p.S604F 0.27 deleterious(0) probably_damaging(1) TCGA-EX-A8YF-01 20 376984 376984 G A TRIB3 Missense_Mutation p.D243N 0.23 deleterious(0) probably_damaging(1) TCGA-EX-A8YF-01 20 48124481 48124481 G T PTGIS Silent p.P493P 0.41 TCGA-EX-A8YF-01 22 24123434 24123434 C T MMP11 Nonsense_Mutation p.R305* 0.39 TCGA-EX-A8YF-01 2 111921764 111921764 C T BCL2L11 Nonsense_Mutation p.R185* 0.17 TCGA-EX-A8YF-01 2 11389789 11389789 G A ROCK2 Nonsense_Mutation p.Q154* 0.22 TCGA-EX-A8YF-01 2 167263075 167263075 T C SCN7A Missense_Mutation p.H1355R 0.12 tolerated(1) possibly_damaging(0.565) TCGA-EX-A8YF-01 2 170027148 170027148 G A LRP2 Nonsense_Mutation p.R3765* 0.25 TCGA-EX-A8YF-01 2 232234713 232234713 G A ARMC9 RNA 0.21 TCGA-EX-A8YF-01 2 242051808 242051808 C T PASK Missense_Mutation p.R1134H 0.33 deleterious(0) probably_damaging(0.995) TCGA-EX-A8YF-01 3 10251282 10251282 C T IRAK2 Missense_Mutation p.P145L 0.07 tolerated(0.44) benign(0.004) TCGA-EX-A8YF-01 3 58503148 58503148 C A ACOX2 Silent p.V545V 0.18 TCGA-EX-A8YF-01 4 103723725 103723725 G A UBE2D3 Missense_Mutation p.P66L 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.471) TCGA-EX-A8YF-01 4 122747003 122747003 C T BBS7 3'UTR 0.25 TCGA-EX-A8YF-01 4 140311346 140311346 G C NAA15 3'UTR 0.32 TCGA-EX-A8YF-01 4 155250714 155250714 G A DCHS2 Silent p.F838F 0.25 TCGA-EX-A8YF-01 4 187521496 187521496 G A FAT1 Nonsense_Mutation p.Q3887* 0.58 TCGA-EX-A8YF-01 4 420063 420063 C T ABCA11P RNA 0.25 TCGA-EX-A8YF-01 5 140482267 140482267 G A PCDHB3 Silent p.P678P 0.25 TCGA-EX-A8YF-01 5 140605167 140605167 T G PCDHB14 Missense_Mutation p.V697G 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EX-A8YF-01 5 140625571 140625571 T C PCDHB15 Missense_Mutation p.I142T 0.30 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-EX-A8YF-01 5 140807792 140807792 A G PCDHGB6 Intron 0.07 TCGA-EX-A8YF-01 5 176939515 176939515 C T DDX41 Missense_Mutation p.E511K 0.18 tolerated(1) possibly_damaging(0.698) TCGA-EX-A8YF-01 5 9041739 9041739 C T SEMA5A 3'UTR 0.16 TCGA-EX-A8YF-01 6 43109528 43109528 C T PTK7 Missense_Mutation p.R589C 0.71 deleterious(0) probably_damaging(0.946) TCGA-EX-A8YF-01 6 90390390 90390390 C T MDN1 Silent p.R4061R 0.48 TCGA-EX-A8YF-01 7 126249491 126249491 G A GRM8 Silent p.I473I 0.47 TCGA-EX-A8YF-01 7 36445877 36445877 C T ANLN Missense_Mutation p.S192L 0.42 tolerated(0.1) probably_damaging(0.984) TCGA-EX-A8YF-01 7 86794254 86794254 G A DMTF1 5'UTR 0.25 TCGA-EX-A8YF-01 8 145535839 145535839 G A HSF1 Missense_Mutation p.A351T 0.33 tolerated(0.49) benign(0.009) TCGA-EX-A8YF-01 8 30210598 30210598 C T TUBBP1 RNA 0.47 TCGA-EX-A8YF-01 8 66622676 66622676 G A MTFR1 3'UTR 0.50 TCGA-EX-A8YF-01 9 125438233 125438233 C G OR1L3 Missense_Mutation p.I275M 0.18 deleterious(0.02) benign(0.2) TCGA-EX-A8YF-01 9 140082157 140082157 C T ANAPC2 Missense_Mutation p.M172I 0.31 tolerated(1) benign(0.008) TCGA-EX-A8YF-01 X 123512355 123512355 C T TENM1 3'UTR 0.21 TCGA-EX-A8YF-01 X 47004001 47004001 G A NDUFB11 Silent p.R26R 0.37 TCGA-EX-A8YF-01 X 54783401 54783401 C T ITIH6 Missense_Mutation p.D1036N 0.33 tolerated(0.09) benign(0.008) TCGA-EX-A8YF-01 X 70511739 70511739 G A NONO Missense_Mutation p.E89K 0.23 deleterious(0) possibly_damaging(0.476) TCGA-FU-A23K-01 10 106976806 106976806 G A SORCS3 Missense_Mutation p.G887E 0.34 deleterious(0) probably_damaging(1) TCGA-FU-A23K-01 10 129913693 129913693 G T MKI67 Missense_Mutation p.Q327K 0.64 tolerated(0.09) possibly_damaging(0.604) TCGA-FU-A23K-01 10 5203836 5203836 C T AKR1CL1 Missense_Mutation p.V121I 0.46 tolerated(0.26) benign(0.011) TCGA-FU-A23K-01 10 89717609 89717609 G A PTEN Splice_Site p.X212_splice 0.69 TCGA-FU-A23K-01 11 125472272 125472272 G A STT3A Missense_Mutation p.R75Q 0.31 deleterious(0.01) benign(0.26) TCGA-FU-A23K-01 11 18637159 18637159 C A SPTY2D1 Missense_Mutation p.G221V 0.27 tolerated(0.28) benign(0) TCGA-FU-A23K-01 11 34478296 34478296 G A CAT Missense_Mutation p.E330K 0.32 deleterious(0) probably_damaging(1) TCGA-FU-A23K-01 11 34501676 34501676 G A ELF5 3'UTR 0.33 TCGA-FU-A23K-01 11 35231516 35231516 G C CD44 Missense_Mutation p.Q507H 0.32 deleterious(0.02) benign(0.202) TCGA-FU-A23K-01 11 63276260 63276260 G A LGALS12 Missense_Mutation p.D80N 0.16 deleterious(0) possibly_damaging(0.674) TCGA-FU-A23K-01 11 66802123 66802123 G C SYT12 Missense_Mutation p.K14N 0.27 tolerated_low_confidence(0.25) benign(0.01) TCGA-FU-A23K-01 12 113314457 113314457 G C RPH3A Silent p.P319P 0.21 TCGA-FU-A23K-01 12 27116335 27116335 G A FGFR1OP2 Missense_Mutation p.E191K 0.38 deleterious(0.02) probably_damaging(0.971) TCGA-FU-A23K-01 12 40013237 40013237 C G ABCD2 Missense_Mutation p.E61Q 0.23 tolerated(0.29) benign(0.002) TCGA-FU-A23K-01 12 53805170 53805170 G C SP1 3'UTR 0.20 TCGA-FU-A23K-01 13 103436786 103436786 C T KDELC1 3'UTR 0.30 TCGA-FU-A23K-01 13 79175810 79175810 C G POU4F1 Missense_Mutation p.E334Q 0.35 deleterious(0) unknown(0) TCGA-FU-A23K-01 14 105404328 105404328 C G AHNAK2 3'UTR 0.18 TCGA-FU-A23K-01 14 105404399 105404399 C T AHNAK2 3'UTR 0.16 TCGA-FU-A23K-01 14 105404558 105404558 C G AHNAK2 Missense_Mutation p.E5744Q 0.25 probably_damaging(0.909) TCGA-FU-A23K-01 14 105405143 105405143 C A AHNAK2 Nonsense_Mutation p.E5549* 0.30 TCGA-FU-A23K-01 14 105405820 105405820 C G AHNAK2 Missense_Mutation p.G5323A 0.29 possibly_damaging(0.554) TCGA-FU-A23K-01 14 105406022 105406022 C T AHNAK2 Missense_Mutation p.E5256K 0.27 benign(0.043) TCGA-FU-A23K-01 14 23857474 23857474 C G MYH6 Missense_Mutation p.E1417Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-FU-A23K-01 14 38724396 38724396 C G CLEC14A Missense_Mutation p.E278Q 0.40 tolerated(0.6) benign(0.022) TCGA-FU-A23K-01 14 59792443 59792443 G C DAAM1 Missense_Mutation p.E351Q 0.19 deleterious(0.01) unknown(0) TCGA-FU-A23K-01 14 96152916 96152916 C T TCL1B Missense_Mutation p.R38W 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-FU-A23K-01 15 22849171 22849171 G A TUBGCP5 Intron 0.30 TCGA-FU-A23K-01 15 26812728 26812728 C T GABRB3 Missense_Mutation p.G279R 0.13 deleterious(0) probably_damaging(1) TCGA-FU-A23K-01 15 27017880 27017880 C T GABRB3 Silent p.T40T 0.26 TCGA-FU-A23K-01 15 78894271 78894271 C T CHRNA3 Missense_Mutation p.R238Q 0.18 deleterious(0.04) probably_damaging(0.909) TCGA-FU-A23K-01 15 83533003 83533003 C G HOMER2 Missense_Mutation p.E101D 0.36 tolerated(0.11) benign(0.002) TCGA-FU-A23K-01 16 20808370 20808370 G A ACSM3 3'UTR 0.36 TCGA-FU-A23K-01 16 28986868 28986868 C T SPNS1 Silent p.L99L 0.29 TCGA-FU-A23K-01 16 3900914 3900914 G A CREBBP Missense_Mutation p.P61L 0.32 probably_damaging(0.991) TCGA-FU-A23K-01 16 72828798 72828798 G A ZFHX3 Nonsense_Mutation p.Q2595* 0.32 TCGA-FU-A23K-01 16 86602295 86602295 G A FOXC2 Missense_Mutation p.E452K 0.38 deleterious(0) possibly_damaging(0.64) TCGA-FU-A23K-01 17 10600752 10600752 G C SCO1 Missense_Mutation p.R25G 0.29 deleterious_low_confidence(0.01) benign(0.048) TCGA-FU-A23K-01 17 16001722 16001722 G A NCOR1 Silent p.L927L 0.39 TCGA-FU-A23K-01 17 33904559 33904559 C G PEX12 Missense_Mutation p.D60H 0.38 deleterious(0) probably_damaging(1) TCGA-FU-A23K-01 17 3806871 3806871 G A P2RX1 Silent p.I193I 0.34 TCGA-FU-A23K-01 17 38990881 38990881 C T TMEM99 Missense_Mutation p.S38L 0.28 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-FU-A23K-01 17 56276426 56276426 C A EPX Silent p.P382P 0.33 TCGA-FU-A23K-01 17 7477965 7477965 C A EIF4A1 Silent p.I58I 0.39 TCGA-FU-A23K-01 18 13612692 13612692 G A LDLRAD4 Intron 0.26 TCGA-FU-A23K-01 18 13612736 13612736 G A LDLRAD4 Intron 0.26 TCGA-FU-A23K-01 18 44561020 44561020 G A TCEB3B Silent p.L206L 0.42 TCGA-FU-A23K-01 18 59739947 59739947 G C PIGN Missense_Mutation p.F877L 0.21 deleterious(0) probably_damaging(0.979) TCGA-FU-A23K-01 18 63481756 63481756 G A CDH7 Missense_Mutation p.D181N 0.34 deleterious(0) probably_damaging(0.997) TCGA-FU-A23K-01 18 8252485 8252485 G T PTPRM Splice_Site p.X852_splice 0.25 TCGA-FU-A23K-01 19 1013310 1013310 G C TMEM259 Missense_Mutation p.F179L 0.30 tolerated(0.41) benign(0.004) TCGA-FU-A23K-01 19 12981737 12981737 G C MAST1 Missense_Mutation p.E1035Q 0.23 tolerated(0.09) probably_damaging(0.999) TCGA-FU-A23K-01 19 12981865 12981865 G C MAST1 Missense_Mutation p.A1048P 0.38 deleterious(0.01) possibly_damaging(0.673) TCGA-FU-A23K-01 19 14991727 14991727 T A OR7A17 Silent p.A147A 0.30 TCGA-FU-A23K-01 19 18967005 18967005 C T UPF1 Silent p.L574L 0.37 TCGA-FU-A23K-01 19 39234770 39234770 G A CAPN12 Silent p.L12L 0.36 TCGA-FU-A23K-01 19 46388968 46388968 C G IRF2BP1 Missense_Mutation p.W22S 0.47 deleterious(0) probably_damaging(0.942) TCGA-FU-A23K-01 19 46663962 46663962 C T IGFL2 Silent p.D66D 0.25 TCGA-FU-A23K-01 19 4702154 4702154 G C DPP9 Silent p.L299L 0.32 TCGA-FU-A23K-01 19 4702155 4702155 A T DPP9 Missense_Mutation p.L299H 0.32 tolerated(0.54) benign(0.012) TCGA-FU-A23K-01 19 48342779 48342779 C T CRX Missense_Mutation p.S152F 0.26 tolerated(0.2) possibly_damaging(0.851) TCGA-FU-A23K-01 19 52000163 52000163 C T SIGLEC12 Missense_Mutation p.A524T 0.07 tolerated(0.11) possibly_damaging(0.672) TCGA-FU-A23K-01 19 58846567 58846567 G C ZSCAN22 Missense_Mutation p.K133N 0.54 deleterious(0.05) possibly_damaging(0.741) TCGA-FU-A23K-01 19 7676636 7676636 C T CAMSAP3 Silent p.V446V 0.29 TCGA-FU-A23K-01 1 100608696 100608696 G C TRMT13 Missense_Mutation p.D225H 0.16 deleterious(0) probably_damaging(0.999) TCGA-FU-A23K-01 1 150237017 150237017 G C CA14 Missense_Mutation p.K324N 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-FU-A23K-01 1 153927568 153927568 C G CRTC2 Missense_Mutation p.Q76H 0.35 deleterious(0) probably_damaging(0.973) TCGA-FU-A23K-01 1 169677748 169677748 T G SELL Silent p.I107I 0.27 TCGA-FU-A23K-01 1 19204081 19204081 G A ALDH4A1 Silent p.F322F 0.31 TCGA-FU-A23K-01 1 19484358 19484358 G C UBR4 Missense_Mutation p.S1904C 0.25 probably_damaging(0.998) TCGA-FU-A23K-01 1 197326066 197326066 G A CRB1 Missense_Mutation p.R365H 0.35 tolerated(0.69) benign(0.009) TCGA-FU-A23K-01 1 206230995 206230995 C G AVPR1B Missense_Mutation p.H376Q 0.33 tolerated(0.42) benign(0.024) TCGA-FU-A23K-01 1 220269459 220269459 C A IARS2 Nonsense_Mutation p.S94* 0.29 TCGA-FU-A23K-01 1 220269471 220269471 C T IARS2 Missense_Mutation p.S98L 0.27 deleterious(0.01) possibly_damaging(0.898) TCGA-FU-A23K-01 1 235969198 235969198 C G LYST Missense_Mutation p.A1080P 0.26 deleterious_low_confidence(0.04) benign(0.35) TCGA-FU-A23K-01 1 235969573 235969573 C G LYST Missense_Mutation p.E955Q 0.28 deleterious_low_confidence(0) benign(0.108) TCGA-FU-A23K-01 1 35365805 35365805 G A DLGAP3 Missense_Mutation p.R393W 0.32 deleterious(0) possibly_damaging(0.752) TCGA-FU-A23K-01 1 40706021 40706021 C T RLF Missense_Mutation p.R1883W 0.31 deleterious(0) probably_damaging(0.999) TCGA-FU-A23K-01 1 52882338 52882338 G C PRPF38A Missense_Mutation p.K305N 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-FU-A23K-01 1 52882347 52882347 G C PRPF38A Silent p.R308R 0.18 TCGA-FU-A23K-01 1 91182267 91182267 G A BARHL2 Silent p.T162T 0.43 TCGA-FU-A23K-01 1 91182268 91182268 G A BARHL2 Missense_Mutation p.T162I 0.38 deleterious(0.04) unknown(0) TCGA-FU-A23K-01 20 25255328 25255328 C G PYGB Missense_Mutation p.T210S 0.46 tolerated(0.4) benign(0) TCGA-FU-A23K-01 20 26094539 26094539 C T NCOR1P1 RNA 0.09 TCGA-FU-A23K-01 20 34205119 34205119 G C SPAG4 Silent p.L122L 0.79 TCGA-FU-A23K-01 20 34205484 34205484 G A SPAG4 Missense_Mutation p.G151E 0.57 tolerated(0.09) possibly_damaging(0.616) TCGA-FU-A23K-01 20 34207117 34207117 G T SPAG4 Missense_Mutation p.G265V 0.53 deleterious(0) probably_damaging(1) TCGA-FU-A23K-01 20 34207230 34207230 G C SPAG4 Missense_Mutation p.E303Q 0.62 tolerated(0.36) probably_damaging(1) TCGA-FU-A23K-01 20 35207246 35207246 G A TGIF2 Silent p.G23G 0.56 TCGA-FU-A23K-01 20 35207325 35207325 G A TGIF2 Missense_Mutation p.E50K 0.57 deleterious(0) probably_damaging(1) TCGA-FU-A23K-01 20 35207333 35207333 G A TGIF2 Silent p.L52L 0.56 TCGA-FU-A23K-01 20 56098962 56098962 C T CTCFL Silent p.L100L 0.18 TCGA-FU-A23K-01 20 56099150 56099150 C G CTCFL Missense_Mutation p.E38Q 0.21 tolerated(0.11) benign(0.177) TCGA-FU-A23K-01 20 865825 865825 A G ANGPT4 Missense_Mutation p.V244A 0.15 tolerated(1) benign(0) TCGA-FU-A23K-01 21 35183398 35183398 G T ITSN1 Silent p.V813V 0.31 TCGA-FU-A23K-01 21 43524176 43524176 C T UMODL1 Missense_Mutation p.R500W 0.34 deleterious(0) benign(0.119) TCGA-FU-A23K-01 21 47786940 47786940 G A PCNT Silent p.E1017E 0.28 TCGA-FU-A23K-01 22 18609338 18609338 C G TUBA8 Nonsense_Mutation p.S198* 0.33 TCGA-FU-A23K-01 22 29456463 29456463 G A C22orf31 Silent p.F124F 0.27 TCGA-FU-A23K-01 2 136566629 136566629 G A LCT Silent p.A1096A 0.12 TCGA-FU-A23K-01 2 179613392 179613392 A G TTN Intron 0.28 TCGA-FU-A23K-01 2 179641169 179641169 C T TTN Missense_Mutation p.E1808K 0.36 TCGA-FU-A23K-01 2 183826937 183826937 G A NCKAP1 Nonsense_Mutation p.R617* 0.27 TCGA-FU-A23K-01 2 206911292 206911292 C G INO80D Missense_Mutation p.E337Q 0.34 deleterious(0.01) benign(0.098) TCGA-FU-A23K-01 2 215823081 215823081 G A ABCA12 Nonsense_Mutation p.Q2013* 0.30 TCGA-FU-A23K-01 2 224866375 224866375 C T SERPINE2 Missense_Mutation p.M93I 0.25 deleterious(0.01) possibly_damaging(0.823) TCGA-FU-A23K-01 2 241622114 241622114 G A AQP12B Silent p.L47L 0.38 TCGA-FU-A23K-01 2 46739078 46739078 C G ATP6V1E2 3'UTR 0.48 TCGA-FU-A23K-01 2 46739842 46739842 C G ATP6V1E2 Silent p.L3L 0.30 TCGA-FU-A23K-01 2 55544890 55544890 C T CCDC88A Missense_Mutation p.E1137K 0.31 deleterious(0) probably_damaging(0.997) TCGA-FU-A23K-01 2 74653277 74653277 G A RTKN 3'UTR 0.08 TCGA-FU-A23K-01 3 119134599 119134599 G T ARHGAP31 Missense_Mutation p.V1275L 0.45 tolerated(0.5) benign(0.001) TCGA-FU-A23K-01 3 178921549 178921549 T G PIK3CA Missense_Mutation p.V344G 0.27 deleterious(0) probably_damaging(0.987) TCGA-FU-A23K-01 3 46717778 46717778 C G ALS2CL Missense_Mutation p.E715Q 0.38 tolerated(0.07) possibly_damaging(0.694) TCGA-FU-A23K-01 3 47045571 47045571 C T NBEAL2 Silent p.I1962I 0.32 TCGA-FU-A23K-01 4 142053952 142053952 G A RNF150 Missense_Mutation p.S4F 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FU-A23K-01 4 146791581 146791581 C T ZNF827 Silent p.E599E 0.13 TCGA-FU-A23K-01 4 170926743 170926743 C T MFAP3L Missense_Mutation p.E96K 0.54 tolerated(0.8) benign(0.009) TCGA-FU-A23K-01 4 3444814 3444814 C G HGFAC Missense_Mutation p.F112L 0.47 deleterious(0) possibly_damaging(0.737) TCGA-FU-A23K-01 4 88258413 88258413 C T HSD17B11 3'UTR 0.21 TCGA-FU-A23K-01 5 112175921 112175921 G C APC Missense_Mutation p.E1544Q 0.30 benign(0.14) TCGA-FU-A23K-01 5 115167552 115167552 G A ATG12 Silent p.G124G 0.14 TCGA-FU-A23K-01 5 137589024 137589024 G C GFRA3 Silent p.L355L 0.38 TCGA-FU-A23K-01 5 66479484 66479484 G A CD180 Missense_Mutation p.S396F 0.28 tolerated(0.13) benign(0.053) TCGA-FU-A23K-01 5 68737491 68737491 G A MARVELD2 3'UTR 0.36 TCGA-FU-A23K-01 5 89802378 89802378 G A POLR3G Missense_Mutation p.D158N 0.38 tolerated(0.08) unknown(0) TCGA-FU-A23K-01 6 127611068 127611068 C T ECHDC1 Nonsense_Mutation p.W290* 0.62 TCGA-FU-A23K-01 6 161470014 161470014 C T MAP3K4 Missense_Mutation p.S237L 0.80 deleterious(0) probably_damaging(0.971) TCGA-FU-A23K-01 6 27775463 27775463 G T HIST1H2BL Silent p.I74I 0.73 TCGA-FU-A23K-01 6 31831514 31831514 C G SLC44A4 Missense_Mutation p.E675Q 0.71 deleterious(0) probably_damaging(1) TCGA-FU-A23K-01 6 32805917 32805917 G A TAP2 Missense_Mutation p.P32S 0.15 deleterious(0) unknown(0) TCGA-FU-A23K-01 6 36713162 36713162 C T CPNE5 Intron 0.75 TCGA-FU-A23K-01 7 141705385 141705385 C A MGAM Missense_Mutation p.L19I 0.27 tolerated(0.07) benign(0) TCGA-FU-A23K-01 7 27169068 27169068 C T HOXA4 Missense_Mutation p.E247K 0.23 deleterious(0) probably_damaging(0.999) TCGA-FU-A23K-01 7 31904683 31904683 G A PDE1C Missense_Mutation p.A268V 0.35 tolerated(0.3) benign(0.408) TCGA-FU-A23K-01 7 80292452 80292452 C T CD36 Silent p.Y192Y 0.29 TCGA-FU-A23K-01 8 86377680 86377680 G A CA2 Missense_Mutation p.D72N 0.30 deleterious(0) probably_damaging(0.953) TCGA-FU-A23K-01 9 131351132 131351132 C G SPTAN1 Silent p.V972V 0.25 TCGA-FU-A23K-01 9 133370371 133370371 G A ASS1 Missense_Mutation p.R363Q 0.30 deleterious(0.04) benign(0.316) TCGA-FU-A23K-01 9 84548096 84548096 G A RP11-383M4.6 Intron 0.11 TCGA-FU-A23K-01 X 105855223 105855223 G A CXorf57 5'UTR 0.46 TCGA-FU-A23K-01 X 112058755 112058755 G C AMOT Nonsense_Mutation p.S408* 0.20 TCGA-FU-A23K-01 X 132161099 132161099 G A USP26 Missense_Mutation p.H384Y 0.23 tolerated(0.08) probably_damaging(0.914) TCGA-FU-A23K-01 X 3229028 3229028 G A MXRA5 Nonsense_Mutation p.Q2406* 0.31 TCGA-FU-A23K-01 X 63412990 63412990 G C AMER1 Silent p.L59L 0.19 TCGA-FU-A23K-01 X 77387268 77387268 G A TAF9B Missense_Mutation p.P199S 0.41 tolerated(0.32) benign(0.01) TCGA-FU-A23K-01 X 90691095 90691095 C T PABPC5 Silent p.R173R 0.22 TCGA-FU-A23L-01 10 129902237 129902237 T A MKI67 Missense_Mutation p.T2623S 0.20 tolerated(0.14) possibly_damaging(0.73) TCGA-FU-A23L-01 10 14944426 14944426 A T SUV39H2 Missense_Mutation p.D383V 0.45 tolerated(0.17) possibly_damaging(0.479) TCGA-FU-A23L-01 10 32576027 32576027 T C EPC1 Missense_Mutation p.Q384R 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-FU-A23L-01 10 69832930 69832930 G A HERC4 5'UTR 0.33 TCGA-FU-A23L-01 10 72541760 72541760 G T TBATA Nonsense_Mutation p.S25* 0.41 TCGA-FU-A23L-01 10 85965626 85965626 C T CDHR1 Silent p.I302I 0.16 TCGA-FU-A23L-01 10 95721030 95721030 G T PIPSL RNA 0.08 TCGA-FU-A23L-01 10 95849033 95849033 C T PLCE1 Intron 0.23 TCGA-FU-A23L-01 11 102575359 102575359 C G MMP27 Missense_Mutation p.E84Q 0.17 deleterious(0.02) possibly_damaging(0.803) TCGA-FU-A23L-01 11 102742413 102742413 C A MMP12 RNA 0.58 TCGA-FU-A23L-01 11 31477934 31477934 C G IMMP1L Splice_Site p.X65_splice 0.16 TCGA-FU-A23L-01 11 43429072 43429072 T G TTC17 Missense_Mutation p.L670R 0.27 tolerated(0.33) possibly_damaging(0.895) TCGA-FU-A23L-01 11 4674564 4674564 C T OR51E1 Missense_Mutation p.R270C 0.27 tolerated(0.14) possibly_damaging(0.466) TCGA-FU-A23L-01 11 489708 489708 G C PTDSS2 Missense_Mutation p.E364Q 0.38 deleterious(0) probably_damaging(0.971) TCGA-FU-A23L-01 11 55872567 55872567 G T OR8H2 Nonsense_Mutation p.G17* 0.33 TCGA-FU-A23L-01 11 64525261 64525261 A G PYGM Missense_Mutation p.V217A 0.49 deleterious(0.03) possibly_damaging(0.881) TCGA-FU-A23L-01 11 64563777 64563777 G A MAP4K2 Silent p.P573P 0.19 TCGA-FU-A23L-01 11 65825538 65825538 C T SF3B2 Missense_Mutation p.S264F 0.27 deleterious_low_confidence(0) benign(0.212) TCGA-FU-A23L-01 11 66287093 66287093 C T BBS1 Silent p.V199V 0.22 TCGA-FU-A23L-01 11 68181426 68181426 C T LRP5 Missense_Mutation p.R925C 0.14 tolerated(0.11) benign(0.003) TCGA-FU-A23L-01 11 6912833 6912833 C T OR2D2 Missense_Mutation p.R300K 0.21 tolerated(0.45) benign(0.001) TCGA-FU-A23L-01 11 77632453 77632453 G A INTS4 Missense_Mutation p.S566L 0.25 deleterious(0.04) benign(0.328) TCGA-FU-A23L-01 12 113633355 113633355 G A IQCD 3'UTR 0.11 TCGA-FU-A23L-01 12 121098880 121098880 A G CABP1 Missense_Mutation p.T316A 0.26 tolerated(0.1) benign(0.129) TCGA-FU-A23L-01 12 122209422 122209422 C T TMEM120B Missense_Mutation p.R216C 0.12 deleterious(0) probably_damaging(0.997) TCGA-FU-A23L-01 12 12815011 12815011 G C GPR19 Silent p.L124L 0.32 TCGA-FU-A23L-01 12 14664479 14664479 C G PLBD1 Missense_Mutation p.K337N 0.09 deleterious(0.04) benign(0.076) TCGA-FU-A23L-01 12 21919223 21919223 C G KCNJ8 Missense_Mutation p.E237Q 0.42 deleterious(0) probably_damaging(0.99) TCGA-FU-A23L-01 12 46211629 46211629 A G ARID2 Missense_Mutation p.I199V 0.30 tolerated(0.2) benign(0.422) TCGA-FU-A23L-01 12 48578079 48578079 G C C12orf68 Silent p.V58V 0.37 TCGA-FU-A23L-01 12 49428024 49428024 C T KMT2D Silent p.Q3522Q 0.33 TCGA-FU-A23L-01 12 50040737 50040737 C T FMNL3 Missense_Mutation p.R976Q 0.09 tolerated(0.08) probably_damaging(0.975) TCGA-FU-A23L-01 12 59284455 59284455 G C LRIG3 Silent p.L169L 0.22 TCGA-FU-A23L-01 12 6494466 6494466 C T LTBR Silent p.F131F 0.12 TCGA-FU-A23L-01 12 70070807 70070807 C G BEST3 Silent p.L252L 0.13 TCGA-FU-A23L-01 12 81101787 81101787 G T MYF6 Missense_Mutation p.A97S 0.21 deleterious(0) possibly_damaging(0.579) TCGA-FU-A23L-01 13 101777027 101777027 G A NALCN Silent p.R708R 0.17 TCGA-FU-A23L-01 13 103527899 103527899 C A ERCC5 Missense_Mutation p.S1069R 0.06 tolerated(0.2) benign(0.017) TCGA-FU-A23L-01 13 108863389 108863389 T G LIG4 Missense_Mutation p.E76D 0.17 tolerated(0.58) benign(0.061) TCGA-FU-A23L-01 13 45515288 45515288 G A NUFIP1 3'UTR 0.15 TCGA-FU-A23L-01 13 53418632 53418632 C T PCDH8 3'UTR 0.35 TCGA-FU-A23L-01 14 100820164 100820164 C T WARS Missense_Mutation p.M195I 0.41 tolerated(0.07) benign(0.041) TCGA-FU-A23L-01 14 105418840 105418840 T C AHNAK2 Missense_Mutation p.D983G 0.16 probably_damaging(0.99) TCGA-FU-A23L-01 14 105418845 105418845 C T AHNAK2 Silent p.E981E 0.16 TCGA-FU-A23L-01 14 20692813 20692813 G A OR11H6 Missense_Mutation p.M315I 0.24 tolerated(0.09) benign(0.049) TCGA-FU-A23L-01 14 22090608 22090608 G T TRAV1-1 Nonsense_Mutation p.E72* 0.13 TCGA-FU-A23L-01 14 24525915 24525915 G C LRRC16B Missense_Mutation p.R317P 0.23 deleterious(0) probably_damaging(0.915) TCGA-FU-A23L-01 14 24787690 24787690 G A ADCY4 Nonsense_Mutation p.Q1056* 0.20 TCGA-FU-A23L-01 14 53558534 53558534 C G DDHD1 Missense_Mutation p.D420H 0.12 deleterious(0.02) possibly_damaging(0.698) TCGA-FU-A23L-01 14 58831088 58831088 G C ARID4A Missense_Mutation p.E761Q 0.35 deleterious_low_confidence(0.01) benign(0.01) TCGA-FU-A23L-01 14 64596563 64596563 G A SYNE2 Missense_Mutation p.E4695K 0.13 probably_damaging(0.928) TCGA-FU-A23L-01 14 73678482 73678482 G A PSEN1 Missense_Mutation p.E321K 0.22 tolerated(0.6) benign(0.013) TCGA-FU-A23L-01 14 77919688 77919688 G A VIPAS39 Silent p.D50D 0.34 TCGA-FU-A23L-01 14 78045373 78045385 CGATTCCAGTTGT - SPTLC2 Frame_Shift_Del p.D132Gfs*31 0.18 TCGA-FU-A23L-01 15 101110021 101110021 C G LINS Missense_Mutation p.D566H 0.12 deleterious(0.02) possibly_damaging(0.896) TCGA-FU-A23L-01 15 26793032 26793032 C T GABRB3 Missense_Mutation p.D444N 0.08 deleterious(0.03) probably_damaging(0.96) TCGA-FU-A23L-01 15 26866676 26866676 A G GABRB3 Silent p.Y82Y 0.17 TCGA-FU-A23L-01 15 59911513 59911513 C G GCNT3 Missense_Mutation p.S359C 0.24 deleterious(0) possibly_damaging(0.897) TCGA-FU-A23L-01 15 72454611 72454611 C T GRAMD2 Intron 0.08 TCGA-FU-A23L-01 16 10788238 10788238 C G TEKT5 Missense_Mutation p.E165Q 0.14 deleterious(0) probably_damaging(0.988) TCGA-FU-A23L-01 16 12136830 12136830 C T SNX29 Silent p.I108I 0.29 TCGA-FU-A23L-01 16 23117737 23117737 G C USP31 Silent p.L281L 0.14 TCGA-FU-A23L-01 16 25255471 25255471 C T ZKSCAN2 Missense_Mutation p.R539Q 0.42 tolerated(0.34) benign(0.072) TCGA-FU-A23L-01 16 4165289 4165289 G C ADCY9 Missense_Mutation p.S52C 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FU-A23L-01 16 72122968 72122968 C G TXNL4B Missense_Mutation p.V68L 0.52 tolerated(0.27) benign(0.002) TCGA-FU-A23L-01 16 74516967 74516967 C G GLG1 Missense_Mutation p.E543Q 0.45 deleterious(0.02) benign(0.267) TCGA-FU-A23L-01 16 74517022 74517022 C T GLG1 Missense_Mutation p.M524I 0.38 tolerated(0.14) benign(0.021) TCGA-FU-A23L-01 16 84108318 84108318 C G MBTPS1 Missense_Mutation p.E493Q 0.10 tolerated(0.11) possibly_damaging(0.54) TCGA-FU-A23L-01 17 12898357 12898357 G A ELAC2 Nonsense_Mutation p.Q611* 0.07 TCGA-FU-A23L-01 17 29171008 29171008 G C ATAD5 Missense_Mutation p.L773F 0.19 deleterious(0) probably_damaging(0.997) TCGA-FU-A23L-01 17 35600460 35600460 C G ACACA Missense_Mutation p.E920Q 0.04 tolerated(0.62) benign(0.392) TCGA-FU-A23L-01 17 39190875 39190875 C G KRTAP1-3 Missense_Mutation p.E67Q 0.21 tolerated(0.86) unknown(0) TCGA-FU-A23L-01 17 47388722 47388722 C A ZNF652 Missense_Mutation p.D421Y 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-FU-A23L-01 17 5086862 5086862 C G ZNF594 Missense_Mutation p.Q230H 0.10 tolerated(0.06) probably_damaging(0.993) TCGA-FU-A23L-01 17 65941593 65941593 C T BPTF Missense_Mutation p.P2257S 0.23 benign(0.055) TCGA-FU-A23L-01 17 73654526 73654526 C T RECQL5 Nonsense_Mutation p.W334* 0.15 TCGA-FU-A23L-01 17 7487225 7487225 G C MPDU1 Silent p.P15P 0.05 TCGA-FU-A23L-01 17 76045615 76045615 G A TNRC6C Missense_Mutation p.E158K 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A23L-01 17 8926373 8926373 C T NTN1 Missense_Mutation p.S228L 0.40 deleterious(0.01) possibly_damaging(0.869) TCGA-FU-A23L-01 19 13008605 13008605 G A GCDH Missense_Mutation p.G391R 0.61 deleterious_low_confidence(0) probably_damaging(1) TCGA-FU-A23L-01 19 36640737 36640737 C T CAPNS1 Missense_Mutation p.S268F 0.15 deleterious(0) probably_damaging(1) TCGA-FU-A23L-01 19 39292402 39292402 G T LGALS4 3'UTR 0.06 TCGA-FU-A23L-01 19 46652215 46652215 G A IGFL2 5'UTR 0.40 TCGA-FU-A23L-01 19 47593271 47593271 T C ZC3H4 Missense_Mutation p.E223G 0.12 probably_damaging(0.977) TCGA-FU-A23L-01 19 51920033 51920033 G A SIGLEC10 Missense_Mutation p.S198L 0.20 deleterious(0.03) probably_damaging(0.982) TCGA-FU-A23L-01 19 52149138 52149138 G T SIGLEC14 Silent p.T199T 0.15 TCGA-FU-A23L-01 19 52723005 52723005 T A PPP2R1A Missense_Mutation p.I397N 0.12 deleterious(0) benign(0.045) TCGA-FU-A23L-01 19 53589517 53589517 G C ZNF160 Missense_Mutation p.Q5E 0.09 deleterious(0.04) benign(0.001) TCGA-FU-A23L-01 19 53793351 53793351 G T BIRC8 Missense_Mutation p.Q93K 0.16 tolerated(0.6) benign(0) TCGA-FU-A23L-01 19 55221457 55221457 G A AC098784.2 3'Flank 0.26 TCGA-FU-A23L-01 1 109490305 109490305 A G CLCC1 Silent p.Y89Y 0.05 TCGA-FU-A23L-01 1 112305496 112305496 G A DDX20 Intron 0.25 TCGA-FU-A23L-01 1 115167965 115167965 C T DENND2C Missense_Mutation p.R214H 0.14 deleterious(0.03) probably_damaging(0.975) TCGA-FU-A23L-01 1 117556245 117556246 AA - CD101 Frame_Shift_Del p.K354Vfs*18 0.12 TCGA-FU-A23L-01 1 148344705 148344705 C G NBPF20 Silent p.L71L 0.09 TCGA-FU-A23L-01 1 15541882 15541882 T C TMEM51 Missense_Mutation p.V100A 0.24 tolerated(0.36) benign(0.005) TCGA-FU-A23L-01 1 156132829 156132829 G A SEMA4A Missense_Mutation p.E360K 0.40 deleterious(0) possibly_damaging(0.61) TCGA-FU-A23L-01 1 161139704 161139704 G T PPOX Nonsense_Mutation p.E293* 0.26 TCGA-FU-A23L-01 1 17257074 17257074 G C CROCC Missense_Mutation p.W278C 0.17 probably_damaging(0.999) TCGA-FU-A23L-01 1 214557893 214557893 G A PTPN14 Silent p.I435I 0.04 TCGA-FU-A23L-01 1 22912997 22912997 C T EPHA8 Missense_Mutation p.S283L 0.17 tolerated(0.15) benign(0.035) TCGA-FU-A23L-01 1 231398578 231398578 C T GNPAT Missense_Mutation p.P183L 0.06 deleterious(0) probably_damaging(1) TCGA-FU-A23L-01 1 240256018 240256018 C G FMN2 Missense_Mutation p.I203M 0.10 unknown(0) TCGA-FU-A23L-01 1 24121111 24121111 C T LYPLA2 Intron 0.20 TCGA-FU-A23L-01 1 26898762 26898763 AC - RPS6KA1 Frame_Shift_Del p.T652Sfs*24 0.13 TCGA-FU-A23L-01 1 27272631 27272631 C T NUDC Nonsense_Mutation p.Q319* 0.12 TCGA-FU-A23L-01 1 31656779 31656779 G A NKAIN1 Missense_Mutation p.P119L 0.09 tolerated(0.11) possibly_damaging(0.691) TCGA-FU-A23L-01 1 36754830 36754830 C T THRAP3 Missense_Mutation p.R404W 0.19 deleterious(0.01) possibly_damaging(0.736) TCGA-FU-A23L-01 1 86342821 86342821 C G COL24A1 Missense_Mutation p.G1005A 0.48 deleterious(0) probably_damaging(0.998) TCGA-FU-A23L-01 1 9783273 9783273 C G PIK3CD Silent p.L839L 0.03 TCGA-FU-A23L-01 20 2597805 2597805 G A TMC2 Missense_Mutation p.M676I 0.11 deleterious(0) probably_damaging(0.945) TCGA-FU-A23L-01 20 30784935 30784935 C T PLAGL2 Missense_Mutation p.E271K 0.07 deleterious(0.01) possibly_damaging(0.899) TCGA-FU-A23L-01 20 33575936 33575936 G C MYH7B Missense_Mutation p.E528D 0.23 probably_damaging(0.949) TCGA-FU-A23L-01 20 3677841 3677841 C G SIGLEC1 Missense_Mutation p.E757D 0.09 tolerated(0.33) benign(0.012) TCGA-FU-A23L-01 20 39985721 39985721 C A LPIN3 Missense_Mutation p.F615L 0.14 deleterious(0) probably_damaging(0.981) TCGA-FU-A23L-01 20 4163401 4163401 C T SMOX Silent p.S425S 0.18 TCGA-FU-A23L-01 20 55111233 55111233 G C FAM209B Missense_Mutation p.Q85H 0.27 tolerated(0.06) probably_damaging(0.93) TCGA-FU-A23L-01 21 34924700 34924700 G A SON Missense_Mutation p.E1055K 0.14 benign(0.292) TCGA-FU-A23L-01 21 45548023 45548023 G A PWP2 Missense_Mutation p.R784K 0.42 tolerated(0.27) benign(0.002) TCGA-FU-A23L-01 22 19183791 19183791 C A CLTCL1 Missense_Mutation p.D1393Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-FU-A23L-01 22 19438099 19438099 C G UFD1L 3'UTR 0.19 TCGA-FU-A23L-01 22 29083846 29083846 G A CHEK2 3'UTR 0.35 TCGA-FU-A23L-01 22 38201771 38201771 C T H1F0 Missense_Mutation p.R74C 0.42 deleterious(0) probably_damaging(0.997) TCGA-FU-A23L-01 22 50655515 50655515 G A SELO Silent p.A601A 0.09 TCGA-FU-A23L-01 22 50879329 50879329 C G PPP6R2 Missense_Mutation p.S792C 0.26 tolerated(0.07) probably_damaging(0.982) TCGA-FU-A23L-01 2 100623769 100623769 C T AFF3 Missense_Mutation p.E135K 0.35 tolerated(0.05) possibly_damaging(0.58) TCGA-FU-A23L-01 2 11332586 11332586 G A ROCK2 Missense_Mutation p.P1314S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-FU-A23L-01 2 139308479 139308479 G A SPOPL Silent p.L69L 0.14 TCGA-FU-A23L-01 2 145147383 145147383 C T ZEB2 Missense_Mutation p.E1094K 0.10 deleterious(0.02) probably_damaging(0.98) TCGA-FU-A23L-01 2 1647149 1647149 A T PXDN Missense_Mutation p.C1315S 0.11 deleterious(0.02) probably_damaging(0.99) TCGA-FU-A23L-01 2 176982180 176982180 G T HOXD10 Missense_Mutation p.G207C 0.14 tolerated(0.06) benign(0.256) TCGA-FU-A23L-01 2 179604131 179604131 G A TTN Missense_Mutation p.T4610I 0.11 TCGA-FU-A23L-01 2 179641600 179641600 C T TTN Missense_Mutation p.R1664Q 0.18 TCGA-FU-A23L-01 2 197004445 197004445 G A STK17B Silent p.L245L 0.18 TCGA-FU-A23L-01 2 201435772 201435772 G C SGOL2 Splice_Site p.X235_splice 0.07 TCGA-FU-A23L-01 2 226446723 226446723 G A NYAP2 Missense_Mutation p.R197Q 0.21 deleterious(0) probably_damaging(0.946) TCGA-FU-A23L-01 2 230723835 230723835 G C TRIP12 Nonsense_Mutation p.S185* 0.37 TCGA-FU-A23L-01 2 238267881 238267881 C G COL6A3 Missense_Mutation p.E2108Q 0.14 probably_damaging(0.995) TCGA-FU-A23L-01 2 238274445 238274445 C G COL6A3 Missense_Mutation p.E1912Q 0.37 probably_damaging(0.937) TCGA-FU-A23L-01 2 239161826 239161826 C G PER2 Missense_Mutation p.Q946H 0.06 deleterious(0.03) possibly_damaging(0.867) TCGA-FU-A23L-01 2 27354887 27354887 G C PREB Missense_Mutation p.F330L 0.16 deleterious(0) probably_damaging(0.998) TCGA-FU-A23L-01 2 44073355 44073355 C T ABCG8 Missense_Mutation p.T76I 0.11 tolerated(0.21) benign(0.009) TCGA-FU-A23L-01 2 80875050 80875050 C G CTNNA2 3'UTR 0.07 TCGA-FU-A23L-01 3 102183077 102183077 G C ZPLD1 Missense_Mutation p.R264P 0.11 tolerated(0.19) probably_damaging(0.98) TCGA-FU-A23L-01 3 105266097 105266097 G C ALCAM Missense_Mutation p.K403N 0.14 tolerated(0.12) benign(0.042) TCGA-FU-A23L-01 3 123983408 123983408 C T KALRN Silent p.L107L 0.49 TCGA-FU-A23L-01 3 124461011 124461011 G A UMPS Missense_Mutation p.E391K 0.16 tolerated(0.15) benign(0.005) TCGA-FU-A23L-01 3 127381124 127381124 C G PODXL2 Missense_Mutation p.I392M 0.10 deleterious(0) possibly_damaging(0.784) TCGA-FU-A23L-01 3 151107867 151107867 T A MED12L Missense_Mutation p.L1816H 0.14 tolerated(0.28) possibly_damaging(0.853) TCGA-FU-A23L-01 3 170828505 170828505 C T TNIK Missense_Mutation p.R761Q 0.44 tolerated(0.26) possibly_damaging(0.833) TCGA-FU-A23L-01 3 172058910 172058910 G A FNDC3B Silent p.Q620Q 0.10 TCGA-FU-A23L-01 3 179525526 179525526 G A PEX5L Nonsense_Mutation p.Q538* 0.03 TCGA-FU-A23L-01 3 182590154 182590154 G C ATP11B Missense_Mutation p.R626T 0.08 deleterious(0) probably_damaging(0.978) TCGA-FU-A23L-01 3 189585726 189585726 C A TP63 Silent p.T329T 0.34 TCGA-FU-A23L-01 3 38316945 38316945 C G SLC22A13 Silent p.V297V 0.53 TCGA-FU-A23L-01 4 119736623 119736623 C A SEC24D Missense_Mutation p.G219V 0.22 deleterious(0.01) probably_damaging(1) TCGA-FU-A23L-01 4 126371183 126371183 A T FAT4 Missense_Mutation p.R3004S 0.17 benign(0.155) TCGA-FU-A23L-01 4 128886250 128886250 G C MFSD8 Silent p.L13L 0.13 TCGA-FU-A23L-01 4 146058813 146058813 T A OTUD4 Missense_Mutation p.R973S 0.15 deleterious(0) probably_damaging(0.999) TCGA-FU-A23L-01 4 41016329 41016329 G T APBB2 Missense_Mutation p.P36T 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-FU-A23L-01 4 41682066 41682066 A - LIMCH1 Frame_Shift_Del p.K805Rfs*20 0.11 TCGA-FU-A23L-01 4 57273828 57273828 G C PPAT Missense_Mutation p.F61L 0.20 tolerated(0.25) benign(0.003) TCGA-FU-A23L-01 4 71201722 71201722 C T CABS1 Silent p.D322D 0.15 TCGA-FU-A23L-01 4 77051823 77051823 G A NUP54 Nonsense_Mutation p.Q348* 0.12 TCGA-FU-A23L-01 4 79440596 79440596 G C FRAS1 Missense_Mutation p.E3501Q 0.17 possibly_damaging(0.78) TCGA-FU-A23L-01 4 90816360 90816360 A C MMRN1 Missense_Mutation p.K80Q 0.18 tolerated_low_confidence(0.53) benign(0.007) TCGA-FU-A23L-01 5 112174700 112174700 G C APC Missense_Mutation p.D1137H 0.11 probably_damaging(0.971) TCGA-FU-A23L-01 5 112862370 112862370 C G YTHDC2 Missense_Mutation p.S188C 0.28 tolerated(0.1) benign(0.246) TCGA-FU-A23L-01 5 140516603 140516603 C T PCDHB5 Silent p.R529R 0.08 TCGA-FU-A23L-01 5 140529802 140529802 G A PCDHB6 5'Flank 0.24 TCGA-FU-A23L-01 5 147015790 147015790 C G JAKMIP2 Missense_Mutation p.E558Q 0.35 deleterious(0.03) benign(0.086) TCGA-FU-A23L-01 5 153755919 153755919 G A GALNT10 Silent p.L217L 0.43 TCGA-FU-A23L-01 5 167645660 167645660 C A TENM2 Silent p.P1588P 0.21 TCGA-FU-A23L-01 5 169780916 169780916 C G KCNIP1 Missense_Mutation p.F12L 0.34 tolerated_low_confidence(0.83) benign(0) TCGA-FU-A23L-01 5 178541064 178541064 G T ADAMTS2 Missense_Mutation p.S1147Y 0.15 deleterious(0.05) benign(0.396) TCGA-FU-A23L-01 5 39126186 39126186 C G FYB Missense_Mutation p.L663F 0.66 deleterious(0.01) possibly_damaging(0.845) TCGA-FU-A23L-01 5 41039655 41039655 T C MROH2B Silent p.G652G 0.14 TCGA-FU-A23L-01 5 41176632 41176632 C T C6 Silent p.L371L 0.08 TCGA-FU-A23L-01 6 151766898 151766898 A G RMND1 Missense_Mutation p.S17P 0.33 tolerated_low_confidence(0.06) benign(0.004) TCGA-FU-A23L-01 6 153332762 153332762 G C RGS17 Missense_Mutation p.Q194E 0.26 tolerated(0.92) benign(0.009) TCGA-FU-A23L-01 6 16326687 16326687 C T ATXN1 Missense_Mutation p.E619K 0.15 deleterious(0.05) benign(0.306) TCGA-FU-A23L-01 6 35927343 35927343 T A SLC26A8 Missense_Mutation p.K586I 0.72 deleterious(0.02) possibly_damaging(0.689) TCGA-FU-A23L-01 6 38562104 38562104 C T BTBD9 Splice_Site p.X62_splice 0.32 TCGA-FU-A23L-01 6 73787562 73787562 T C KCNQ5 Silent p.D290D 0.25 TCGA-FU-A23L-01 7 116593769 116593769 C T ST7 Intron 0.22 TCGA-FU-A23L-01 7 128119454 128119454 G C METTL2B Missense_Mutation p.E149Q 0.16 tolerated(0.5) benign(0.021) TCGA-FU-A23L-01 7 129395013 129395013 G C NRF1 Missense_Mutation p.E502Q 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.502) TCGA-FU-A23L-01 7 149557788 149557788 G A ZNF862 Silent p.V513V 0.34 TCGA-FU-A23L-01 7 150171486 150171486 G C GIMAP8 Missense_Mutation p.E357Q 0.10 tolerated(0.17) benign(0.079) TCGA-FU-A23L-01 7 151292526 151292526 C G PRKAG2 Missense_Mutation p.E257Q 0.31 tolerated(0.07) benign(0.155) TCGA-FU-A23L-01 7 18687468 18687468 C T HDAC9 Missense_Mutation p.P366S 0.10 tolerated(0.33) benign(0.003) TCGA-FU-A23L-01 7 27147688 27147688 G A HOXA3 Missense_Mutation p.S393L 0.18 deleterious(0) possibly_damaging(0.498) TCGA-FU-A23L-01 7 44555412 44555412 G A NPC1L1 Silent p.L1289L 0.09 TCGA-FU-A23L-01 7 5340136 5340136 C G SLC29A4 Missense_Mutation p.F431L 0.32 tolerated(0.25) benign(0.401) TCGA-FU-A23L-01 7 66260522 66260522 G C KCTD7 Missense_Mutation p.E180Q 0.09 tolerated(0.06) benign(0.055) TCGA-FU-A23L-01 7 83610701 83610701 C T SEMA3A Missense_Mutation p.A530T 0.14 deleterious(0) benign(0.116) TCGA-FU-A23L-01 8 141742741 141742741 G A PTK2 Intron 0.24 TCGA-FU-A23L-01 8 20107234 20107234 C T LZTS1 Silent p.%3D 0.14 TCGA-FU-A23L-01 8 48614331 48614331 C T SPIDR Missense_Mutation p.H608Y 0.20 tolerated(0.26) benign(0.176) TCGA-FU-A23L-01 8 48761816 48761816 C G PRKDC Missense_Mutation p.L2392F 0.10 benign(0.037) TCGA-FU-A23L-01 9 135042422 135042422 C G NTNG2 Missense_Mutation p.F68L 0.31 deleterious(0.04) benign(0.147) TCGA-FU-A23L-01 9 27296981 27296981 C T EQTN Missense_Mutation p.E25K 0.14 tolerated(0.1) probably_damaging(0.986) TCGA-FU-A23L-01 9 6534789 6534789 C G GLDC Splice_Site p.X947_splice 0.29 TCGA-FU-A23L-01 9 711531 711531 G A KANK1 Silent p.V255V 0.14 TCGA-FU-A23L-01 9 79229482 79229482 C G PRUNE2 3'UTR 0.11 TCGA-FU-A23L-01 X 100118508 100118508 C T NOX1 Missense_Mutation p.R73H 0.24 deleterious(0) probably_damaging(1) TCGA-FU-A23L-01 X 102333517 102333517 G T NXF3 Silent p.T474T 0.26 TCGA-FU-A23L-01 X 111078298 111078298 A G TRPC5 Silent p.L583L 0.08 TCGA-FU-A23L-01 X 140994453 140994453 G C MAGEC1 Missense_Mutation p.L421F 0.18 tolerated_low_confidence(0.17) possibly_damaging(0.587) TCGA-FU-A23L-01 X 154066005 154066005 G T F8 Missense_Mutation p.S2308Y 0.19 tolerated(0.39) probably_damaging(0.997) TCGA-FU-A23L-01 X 66931424 66931424 G C AR Missense_Mutation p.G689A 0.17 deleterious(0) probably_damaging(0.998) TCGA-FU-A23L-01 X 77112282 77112282 C A MAGT1 Missense_Mutation p.R239I 0.05 deleterious(0) possibly_damaging(0.847) TCGA-FU-A23L-01 X 96854354 96854354 A G DIAPH2 3'UTR 0.54 TCGA-FU-A2QG-01 10 129913804 129913804 G A MKI67 Missense_Mutation p.R290C 0.78 tolerated(0.11) benign(0) TCGA-FU-A2QG-01 11 107833272 107833272 G T RAB39A 3'UTR 0.30 TCGA-FU-A2QG-01 11 113320812 113320812 A G DRD2 Intron 0.30 TCGA-FU-A2QG-01 11 130064532 130064532 C T ST14 Intron 0.33 TCGA-FU-A2QG-01 11 17191265 17191265 G A PIK3C2A Silent p.S8S 0.50 TCGA-FU-A2QG-01 11 36595309 36595309 C T RAG1 Missense_Mutation p.P152L 0.58 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-FU-A2QG-01 11 3781798 3781798 G A NUP98 Missense_Mutation p.S382L 0.37 deleterious(0) benign(0.019) TCGA-FU-A2QG-01 11 46884233 46884233 C T LRP4 Missense_Mutation p.R1770Q 0.43 tolerated(0.11) benign(0.006) TCGA-FU-A2QG-01 11 62398095 62398095 C T GANAB Missense_Mutation p.R477H 0.34 tolerated(0.16) benign(0.002) TCGA-FU-A2QG-01 11 67069645 67069645 C T ANKRD13D Missense_Mutation p.P554S 0.28 tolerated(1) unknown(0) TCGA-FU-A2QG-01 11 68512505 68512505 G C MTL5 Silent p.L235L 0.40 TCGA-FU-A2QG-01 11 71850074 71850074 C T FOLR3 Missense_Mutation p.P122S 0.36 deleterious(0) possibly_damaging(0.641) TCGA-FU-A2QG-01 11 78381249 78381249 C T TENM4 Silent p.Q2047Q 0.38 TCGA-FU-A2QG-01 11 842418 842418 C G POLR2L Missense_Mutation p.E31Q 0.45 deleterious(0.05) benign(0.298) TCGA-FU-A2QG-01 12 108685872 108685872 G A CMKLR1 Missense_Mutation p.P290S 0.33 tolerated(0.26) benign(0.014) TCGA-FU-A2QG-01 12 109948163 109948163 G A UBE3B Missense_Mutation p.E586K 0.54 tolerated(0.81) benign(0.003) TCGA-FU-A2QG-01 12 121677759 121677759 C - CAMKK2 3'UTR 0.36 TCGA-FU-A2QG-01 12 124256189 124256189 C T DNAH10 Silent p.L53L 0.24 TCGA-FU-A2QG-01 12 18836181 18836181 C T PLCZ1 Missense_Mutation p.V607I 0.64 tolerated(1) benign(0.001) TCGA-FU-A2QG-01 12 52844261 52844261 G A KRT6B Silent p.I228I 0.39 TCGA-FU-A2QG-01 12 52845362 52845362 G C KRT6B Missense_Mutation p.I167M 0.21 deleterious(0.03) probably_damaging(1) TCGA-FU-A2QG-01 14 23793379 23793379 C T PABPN1 Silent p.I254I 0.35 TCGA-FU-A2QG-01 14 51371087 51371087 C T ABHD12B 3'UTR 0.49 TCGA-FU-A2QG-01 14 55515048 55515048 G A SOCS4 3'UTR 0.40 TCGA-FU-A2QG-01 14 55515414 55515414 G C SOCS4 3'UTR 0.35 TCGA-FU-A2QG-01 14 55515616 55515616 G C SOCS4 3'UTR 0.42 TCGA-FU-A2QG-01 14 57877560 57877560 T A NAA30 3'UTR 0.38 TCGA-FU-A2QG-01 14 92625343 92625343 C G CPSF2 Nonsense_Mutation p.S613* 0.50 TCGA-FU-A2QG-01 15 41750013 41750013 G A RTF1 Missense_Mutation p.E201K 0.46 deleterious(0) possibly_damaging(0.808) TCGA-FU-A2QG-01 15 41750014 41750014 A T RTF1 Missense_Mutation p.E201V 0.45 deleterious(0) probably_damaging(0.955) TCGA-FU-A2QG-01 15 41750066 41750066 G C RTF1 Missense_Mutation p.L218F 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A2QG-01 15 42531874 42531874 C T TMEM87A Silent p.L226L 0.29 TCGA-FU-A2QG-01 15 42531888 42531888 C A TMEM87A Nonsense_Mutation p.E222* 0.33 TCGA-FU-A2QG-01 15 42556395 42556395 C T TMEM87A Missense_Mutation p.E100K 0.35 tolerated(0.57) benign(0.001) TCGA-FU-A2QG-01 15 42749499 42749499 C T ZNF106 5'UTR 0.48 TCGA-FU-A2QG-01 15 43695887 43695887 C T TUBGCP4 Missense_Mutation p.H580Y 0.28 deleterious(0.04) benign(0.018) TCGA-FU-A2QG-01 15 43695904 43695904 C A TUBGCP4 Silent p.I585I 0.28 TCGA-FU-A2QG-01 15 74889884 74889884 G A ARID3B 3'UTR 0.49 TCGA-FU-A2QG-01 15 90276274 90276274 T C WDR93 Silent p.C456C 0.41 TCGA-FU-A2QG-01 16 31885192 31885192 C T ZNF267 5'UTR 0.41 TCGA-FU-A2QG-01 16 77228297 77228297 C T MON1B Nonsense_Mutation p.Q181* 0.56 TCGA-FU-A2QG-01 16 780560 780560 C T NARFL Missense_Mutation p.E430K 0.42 tolerated(0.51) benign(0.013) TCGA-FU-A2QG-01 16 780648 780648 C T NARFL Silent p.L400L 0.26 TCGA-FU-A2QG-01 17 21201725 21201725 G C MAP2K3 Missense_Mutation p.G17A 0.24 tolerated(0.54) benign(0.01) TCGA-FU-A2QG-01 17 2808623 2808623 G A RAP1GAP2 Silent p.R42R 0.43 TCGA-FU-A2QG-01 17 5032143 5032143 C T USP6 Intron 0.45 TCGA-FU-A2QG-01 17 60683572 60683572 G T TLK2 Silent p.V647V 0.46 TCGA-FU-A2QG-01 17 61432444 61432444 G A TANC2 Missense_Mutation p.E685K 0.44 deleterious(0) probably_damaging(0.973) TCGA-FU-A2QG-01 17 61670999 61670999 G A DCAF7 3'Flank 0.38 TCGA-FU-A2QG-01 17 63010518 63010518 G A GNA13 Missense_Mutation p.R331W 0.09 deleterious(0.02) probably_damaging(0.964) TCGA-FU-A2QG-01 17 65907170 65907170 C A BPTF Nonsense_Mutation p.S1057* 0.39 TCGA-FU-A2QG-01 17 7077286 7077286 C A ASGR1 Missense_Mutation p.G232V 0.46 deleterious(0) probably_damaging(0.931) TCGA-FU-A2QG-01 17 7296132 7296132 C T TMEM256-PLSCR3 Missense_Mutation p.C216Y 0.35 deleterious(0.01) probably_damaging(1) TCGA-FU-A2QG-01 18 30253150 30253150 C T KLHL14 3'UTR 0.10 TCGA-FU-A2QG-01 18 32920460 32920460 C T ZNF24 Missense_Mutation p.R52Q 0.28 deleterious(0) possibly_damaging(0.553) TCGA-FU-A2QG-01 18 9536562 9536562 G A RALBP1 3'UTR 0.39 TCGA-FU-A2QG-01 19 1093961 1093961 G T POLR2E Silent p.L58L 0.35 TCGA-FU-A2QG-01 19 1233483 1233483 G C C19orf26 Missense_Mutation p.F307L 0.39 tolerated(0.1) probably_damaging(0.997) TCGA-FU-A2QG-01 19 16842008 16842008 G T NWD1 5'UTR 0.48 TCGA-FU-A2QG-01 19 2225393 2225393 G C DOT1L Missense_Mutation p.E1201D 0.40 deleterious_low_confidence(0) benign(0.107) TCGA-FU-A2QG-01 19 37004907 37004907 G C ZNF260 Missense_Mutation p.H412D 0.31 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-FU-A2QG-01 19 37006196 37006196 G A ZNF260 5'UTR 0.38 TCGA-FU-A2QG-01 19 41071420 41071420 G T SPTBN4 Nonsense_Mutation p.E2003* 0.41 TCGA-FU-A2QG-01 19 44590140 44590140 C G ZNF284 Nonsense_Mutation p.S170* 0.38 TCGA-FU-A2QG-01 19 52149143 52149143 G T SIGLEC14 Missense_Mutation p.L198I 0.32 deleterious(0.03) possibly_damaging(0.709) TCGA-FU-A2QG-01 19 52722941 52722941 C T PPP2R1A Intron 0.38 TCGA-FU-A2QG-01 19 55417656 55417656 G A NCR1 Splice_Site p.X12_splice 0.37 TCGA-FU-A2QG-01 19 56388409 56388409 C G NLRP4 Missense_Mutation p.S858C 0.36 deleterious(0.03) benign(0.088) TCGA-FU-A2QG-01 19 57134445 57134445 C T ZNF71 3'UTR 0.31 TCGA-FU-A2QG-01 19 9049262 9049262 G A MUC16 Missense_Mutation p.S10790L 0.47 benign(0.158) TCGA-FU-A2QG-01 19 9449914 9449914 G A ZNF559 Missense_Mutation p.E27K 0.41 deleterious(0) benign(0.079) TCGA-FU-A2QG-01 1 110655651 110655651 G A UBL4B Silent p.E165E 0.35 TCGA-FU-A2QG-01 1 113159482 113159482 A T ST7L Missense_Mutation p.Y81N 0.08 deleterious(0) probably_damaging(1) TCGA-FU-A2QG-01 1 12071732 12071732 G C MFN2 3'UTR 0.42 TCGA-FU-A2QG-01 1 180849254 180849254 G C XPR1 Silent p.L617L 0.40 TCGA-FU-A2QG-01 1 203185875 203185875 G A CHIT1 3'UTR 0.37 TCGA-FU-A2QG-01 1 203185882 203185882 G A CHIT1 3'UTR 0.40 TCGA-FU-A2QG-01 1 203185966 203185966 G C CHIT1 3'UTR 0.45 TCGA-FU-A2QG-01 1 203708795 203708795 G A ATP2B4 Missense_Mutation p.R1144Q 0.38 tolerated_low_confidence(0.42) benign(0.01) TCGA-FU-A2QG-01 1 20664309 20664309 C T VWA5B1 Missense_Mutation p.R705W 0.35 tolerated(0.08) benign(0) TCGA-FU-A2QG-01 1 209605512 209605512 C T MIR205HG Intron 0.33 TCGA-FU-A2QG-01 1 244217341 244217341 G C ZBTB18 Missense_Mutation p.E89Q 0.41 deleterious(0.03) probably_damaging(0.962) TCGA-FU-A2QG-01 1 8390366 8390366 C T SLC45A1 Silent p.L271L 0.46 TCGA-FU-A2QG-01 20 17622492 17622492 C T RRBP1 Missense_Mutation p.E279K 0.53 deleterious(0.01) possibly_damaging(0.486) TCGA-FU-A2QG-01 20 3102944 3102944 G A UBOX5 Missense_Mutation p.A114V 0.30 tolerated(0.22) benign(0.002) TCGA-FU-A2QG-01 20 35220963 35220963 C G TGIF2 3'UTR 0.27 TCGA-FU-A2QG-01 20 35221406 35221406 C A TGIF2 3'UTR 0.55 TCGA-FU-A2QG-01 20 52199357 52199357 C T ZNF217 Silent p.S3S 0.32 TCGA-FU-A2QG-01 20 60904023 60904023 C T LAMA5 Missense_Mutation p.E1442K 0.38 benign(0.043) TCGA-FU-A2QG-01 20 60905569 60905569 G A LAMA5 Silent p.L1318L 0.41 TCGA-FU-A2QG-01 20 62708283 62708283 C T RGS19 5'UTR 0.45 TCGA-FU-A2QG-01 21 33651350 33651350 G C MIS18A 5'UTR 0.43 TCGA-FU-A2QG-01 21 45837900 45837900 C T TRPM2 Silent p.A1079A 0.37 TCGA-FU-A2QG-01 22 37334480 37334480 T C CSF2RB Missense_Mutation p.L877P 0.12 deleterious(0) probably_damaging(0.969) TCGA-FU-A2QG-01 2 100163881 100163881 C T AFF3 3'UTR 0.35 TCGA-FU-A2QG-01 2 128388905 128388905 G A MYO7B Missense_Mutation p.D1662N 0.42 deleterious(0.02) benign(0.049) TCGA-FU-A2QG-01 2 166848733 166848733 G A SCN1A Silent p.Y1684Y 0.39 TCGA-FU-A2QG-01 2 186672655 186672655 G A FSIP2 Missense_Mutation p.D6297N 0.41 benign(0.311) TCGA-FU-A2QG-01 2 37398707 37398707 A T SULT6B1 Silent p.I179I 0.20 TCGA-FU-A2QG-01 2 42275816 42275816 C T PKDCC Silent p.G159G 0.42 TCGA-FU-A2QG-01 2 43801659 43801659 C T THADA Silent p.E515E 0.34 TCGA-FU-A2QG-01 3 14860691 14860691 G A FGD5 Missense_Mutation p.R38Q 0.69 tolerated_low_confidence(0.09) benign(0.091) TCGA-FU-A2QG-01 3 151451726 151451726 G A AADACL2 5'UTR 0.43 TCGA-FU-A2QG-01 3 167090668 167090668 C T ZBBX Missense_Mutation p.V8I 0.32 tolerated(0.1) probably_damaging(0.984) TCGA-FU-A2QG-01 3 17052190 17052190 G A PLCL2 Missense_Mutation p.R325Q 0.39 tolerated(0.33) benign(0.427) TCGA-FU-A2QG-01 3 43388892 43388892 C G SNRK Missense_Mutation p.P381A 0.36 tolerated(0.58) benign(0.018) TCGA-FU-A2QG-01 3 52397151 52397151 C G DNAH1 Silent p.L1745L 0.40 TCGA-FU-A2QG-01 4 153247304 153247304 G C FBXW7 Missense_Mutation p.H500D 0.81 deleterious(0) probably_damaging(1) TCGA-FU-A2QG-01 4 187208962 187208962 G A F11 Silent p.G567G 0.37 TCGA-FU-A2QG-01 4 6884703 6884703 C G KIAA0232 3'UTR 0.67 TCGA-FU-A2QG-01 4 71232574 71232574 C G SMR3A Missense_Mutation p.Q90E 0.85 tolerated_low_confidence(0.45) unknown(0) TCGA-FU-A2QG-01 5 143541826 143541826 C T YIPF5 Silent p.L189L 0.71 TCGA-FU-A2QG-01 5 176637274 176637274 G C NSD1 Missense_Mutation p.G625A 0.78 tolerated_low_confidence(0.33) benign(0.075) TCGA-FU-A2QG-01 5 176637327 176637327 G A NSD1 Missense_Mutation p.D643N 0.88 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-FU-A2QG-01 5 176637330 176637330 G A NSD1 Missense_Mutation p.D644N 0.88 deleterious_low_confidence(0.03) possibly_damaging(0.678) TCGA-FU-A2QG-01 5 176637417 176637417 G C NSD1 Missense_Mutation p.E673Q 0.75 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-FU-A2QG-01 5 176637601 176637601 A G NSD1 Missense_Mutation p.K734R 0.74 tolerated_low_confidence(0.16) benign(0.103) TCGA-FU-A2QG-01 5 176637740 176637740 G C NSD1 Silent p.S780S 0.60 TCGA-FU-A2QG-01 5 176637930 176637930 G - NSD1 Frame_Shift_Del p.E844Rfs*9 0.72 TCGA-FU-A2QG-01 5 176637932 176637932 G A NSD1 Silent p.E844E 0.72 TCGA-FU-A2QG-01 5 176637992 176637992 G A NSD1 Silent p.L864L 0.65 TCGA-FU-A2QG-01 5 176638088 176638088 G A NSD1 Silent p.Q896Q 0.71 TCGA-FU-A2QG-01 5 176638298 176638298 G A NSD1 Silent p.E966E 0.79 TCGA-FU-A2QG-01 6 128643077 128643077 G C PTPRK Intron 0.41 TCGA-FU-A2QG-01 6 27833221 27833221 G C HIST1H2AL Missense_Mutation p.R30P 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-FU-A2QG-01 6 35058228 35058228 C G ANKS1A 3'UTR 0.30 TCGA-FU-A2QG-01 6 43156258 43156258 C T CUL9 Intron 0.27 TCGA-FU-A2QG-01 6 47763151 47763151 T C OPN5 Missense_Mutation p.I203T 0.36 deleterious(0) probably_damaging(0.932) TCGA-FU-A2QG-01 6 71003986 71003986 G C COL9A1 Missense_Mutation p.L194V 0.46 unknown(0) TCGA-FU-A2QG-01 7 105248118 105248118 C G ATXN7L1 3'UTR 0.62 TCGA-FU-A2QG-01 7 157387953 157387953 C T PTPRN2 Missense_Mutation p.A825T 0.81 tolerated(0.34) possibly_damaging(0.759) TCGA-FU-A2QG-01 8 10623045 10623045 C T PINX1 Missense_Mutation p.E285K 0.18 deleterious(0.05) benign(0.036) TCGA-FU-A2QG-01 8 110255180 110255180 G A NUDCD1 3'UTR 0.47 TCGA-FU-A2QG-01 8 124214648 124214648 C T FAM83A Intron 0.35 TCGA-FU-A2QG-01 8 136569708 136569708 C T KHDRBS3 Silent p.I163I 0.35 TCGA-FU-A2QG-01 8 77777294 77777294 C T ZFHX4 3'UTR 0.49 TCGA-FU-A2QG-01 9 101832342 101832342 G A COL15A1 3'UTR 0.28 TCGA-FU-A2QG-01 9 101832984 101832984 G A COL15A1 3'UTR 0.38 TCGA-FU-A2QG-01 9 101833015 101833015 G C COL15A1 3'UTR 0.31 TCGA-FU-A2QG-01 9 139840397 139840397 C T C8G Nonsense_Mutation p.Q98* 0.41 TCGA-FU-A2QG-01 9 140242526 140242526 G A EXD3 Silent p.A665A 0.37 TCGA-FU-A2QG-01 9 35548154 35548154 G A RUSC2 Missense_Mutation p.E546K 0.57 deleterious(0.02) probably_damaging(0.991) TCGA-FU-A2QG-01 9 73296452 73296452 C T TRPM3 Missense_Mutation p.D439N 0.42 deleterious(0) probably_damaging(0.998) TCGA-FU-A2QG-01 9 94821546 94821546 G A SPTLC1 Missense_Mutation p.S202F 0.42 deleterious(0) probably_damaging(0.977) TCGA-FU-A2QG-01 9 99417022 99417022 C T AAED1 Missense_Mutation p.E76K 0.32 deleterious(0.04) possibly_damaging(0.719) TCGA-FU-A2QG-01 X 122532563 122532563 A G GRIA3 Missense_Mutation p.D330G 0.42 deleterious(0.01) possibly_damaging(0.702) TCGA-FU-A2QG-01 X 137793208 137793208 C T FGF13 Intron 0.39 TCGA-FU-A2QG-01 X 152228413 152228413 C T PNMA3 3'UTR 0.29 TCGA-FU-A2QG-01 X 57935544 57935544 C T ZXDA Silent p.L437L 0.38 TCGA-FU-A3EO-01 10 124924418 124924418 G A BUB3 3'UTR 0.27 TCGA-FU-A3EO-01 10 22634734 22634734 G A SPAG6 Silent p.T36T 0.43 TCGA-FU-A3EO-01 10 42972815 42972815 C T LINC00839 RNA 0.38 TCGA-FU-A3EO-01 10 64160273 64160273 C T ZNF365 Intron 0.18 TCGA-FU-A3EO-01 11 113618265 113618265 A C ZW10 Missense_Mutation p.H420Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-FU-A3EO-01 11 118406231 118406231 C T TMEM25 3'UTR 0.41 TCGA-FU-A3EO-01 11 20691274 20691274 C T NELL1 Missense_Mutation p.P2L 0.44 tolerated_low_confidence(0.34) benign(0.001) TCGA-FU-A3EO-01 11 2291996 2291996 C T ASCL2 5'UTR 0.37 TCGA-FU-A3EO-01 11 59828645 59828645 C T MS4A3 Silent p.H4H 0.31 TCGA-FU-A3EO-01 11 6704532 6704532 C T MRPL17 5'UTR 0.30 TCGA-FU-A3EO-01 11 73849953 73849953 C A C2CD3 Missense_Mutation p.G256V 0.42 deleterious(0.02) benign(0.382) TCGA-FU-A3EO-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.46 deleterious(0) benign(0.361) TCGA-FU-A3EO-01 14 103807765 103807765 T G EIF5 3'UTR 0.27 TCGA-FU-A3EO-01 14 20404680 20404680 C A OR4K1 Silent p.I285I 0.18 TCGA-FU-A3EO-01 14 59112032 59112032 G A DACT1 Missense_Mutation p.A231T 0.33 tolerated(1) benign(0.004) TCGA-FU-A3EO-01 14 65008081 65008081 C A HSPA2 Missense_Mutation p.R172S 0.21 deleterious_low_confidence(0.01) benign(0.119) TCGA-FU-A3EO-01 15 60674634 60674634 T C ANXA2 Missense_Mutation p.T37A 0.22 tolerated(0.73) benign(0.013) TCGA-FU-A3EO-01 15 85402524 85402524 G A ALPK3 Missense_Mutation p.G1492S 0.35 deleterious(0) probably_damaging(1) TCGA-FU-A3EO-01 16 11773493 11773493 G A TXNDC11 Missense_Mutation p.A812V 0.69 deleterious(0.04) benign(0.034) TCGA-FU-A3EO-01 16 30036286 30036286 C T FAM57B 3'UTR 0.33 TCGA-FU-A3EO-01 16 3361824 3361824 G A ZNF75A 5'UTR 0.39 TCGA-FU-A3EO-01 16 57689404 57689406 CTC - GPR56 In_Frame_Del p.L290del 0.25 TCGA-FU-A3EO-01 17 1798346 1798346 G T RPA1 Missense_Mutation p.R568L 0.26 deleterious(0.03) benign(0.212) TCGA-FU-A3EO-01 17 41296946 41296946 C T NBR2 3'Flank 0.33 TCGA-FU-A3EO-01 17 47041841 47041841 C T GIP Missense_Mutation p.A30T 0.28 tolerated(0.68) benign(0) TCGA-FU-A3EO-01 17 53241274 53241274 G A STXBP4 3'UTR 0.06 TCGA-FU-A3EO-01 17 64210633 64210633 C T APOH Missense_Mutation p.C307Y 0.53 deleterious(0) probably_damaging(1) TCGA-FU-A3EO-01 18 21750344 21750344 C T OSBPL1A Missense_Mutation p.A789T 0.48 tolerated(0.12) benign(0.086) TCGA-FU-A3EO-01 19 36103778 36103778 G A HAUS5 Missense_Mutation p.E28K 0.34 deleterious(0.01) possibly_damaging(0.641) TCGA-FU-A3EO-01 19 49657003 49657003 C T HRC Missense_Mutation p.D498N 0.40 deleterious(0.01) possibly_damaging(0.835) TCGA-FU-A3EO-01 19 51918459 51918459 C T SIGLEC10 Missense_Mutation p.V436I 0.31 tolerated(0.6) benign(0.106) TCGA-FU-A3EO-01 19 56042597 56042597 G A SBK2 Silent p.Y123Y 0.46 TCGA-FU-A3EO-01 1 110039640 110039640 G A CYB561D1 3'Flank 0.40 TCGA-FU-A3EO-01 1 111490913 111490913 C G LRIF1 Missense_Mutation p.V660L 0.34 tolerated(0.64) possibly_damaging(0.621) TCGA-FU-A3EO-01 1 113456119 113456119 C T SLC16A1 3'UTR 0.39 TCGA-FU-A3EO-01 1 158641935 158641935 G A SPTA1 Missense_Mutation p.R468C 0.45 deleterious(0.03) benign(0.072) TCGA-FU-A3EO-01 1 161326591 161326591 C T SDHC Silent p.F122F 0.27 TCGA-FU-A3EO-01 1 177906448 177906448 G A SEC16B Missense_Mutation p.P802S 0.12 tolerated(0.07) possibly_damaging(0.761) TCGA-FU-A3EO-01 1 201839837 201839837 C T IPO9 Missense_Mutation p.R754C 0.57 deleterious(0) possibly_damaging(0.856) TCGA-FU-A3EO-01 1 206651130 206651130 C T IKBKE Missense_Mutation p.A247V 0.41 deleterious(0) possibly_damaging(0.864) TCGA-FU-A3EO-01 1 32203034 32203034 C T BAI2 Missense_Mutation p.S992N 0.36 tolerated(1) possibly_damaging(0.465) TCGA-FU-A3EO-01 1 33567488 33567488 G A ADC Intron 0.30 TCGA-FU-A3EO-01 1 47144274 47144274 G A EFCAB14 Silent p.D449D 0.30 TCGA-FU-A3EO-01 1 76397739 76397739 G A ASB17 Missense_Mutation p.R80C 0.42 tolerated_low_confidence(0.06) possibly_damaging(0.876) TCGA-FU-A3EO-01 20 19977442 19977442 C T RIN2 Missense_Mutation p.R823W 0.20 deleterious(0) probably_damaging(1) TCGA-FU-A3EO-01 21 34399422 34399422 G A OLIG2 Silent p.S84S 0.41 TCGA-FU-A3EO-01 21 40581957 40581957 G A BRWD1 Silent p.S1387S 0.11 TCGA-FU-A3EO-01 21 45176055 45176055 C G PDXK 3'UTR 0.42 TCGA-FU-A3EO-01 22 39708974 39708974 C T RPL3 Missense_Mutation p.D395N 0.13 deleterious(0.03) benign(0.115) TCGA-FU-A3EO-01 22 40037064 40037064 T G CACNA1I Missense_Mutation p.N311K 0.19 deleterious(0.02) probably_damaging(0.914) TCGA-FU-A3EO-01 22 46509691 46509691 C T FLJ27365 3'UTR 0.13 TCGA-FU-A3EO-01 22 50664366 50664366 G A TUBGCP6 Missense_Mutation p.L614F 0.27 deleterious(0.01) probably_damaging(0.934) TCGA-FU-A3EO-01 2 152954869 152954869 G A CACNB4 Missense_Mutation p.T41I 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.447) TCGA-FU-A3EO-01 2 168725510 168725510 C T B3GALT1 5'UTR 0.12 TCGA-FU-A3EO-01 2 179637917 179637917 G A TTN Silent p.L2592L 0.16 TCGA-FU-A3EO-01 2 20647697 20647697 C TGA RHOB Frame_Shift_Ins p.C159Sfs*83 0.43 TCGA-FU-A3EO-01 2 25754426 25754426 G C DTNB Missense_Mutation p.S306C 0.08 deleterious(0) probably_damaging(0.985) TCGA-FU-A3EO-01 2 27165488 27165488 T C DPYSL5 Missense_Mutation p.L437P 0.43 tolerated(0.13) possibly_damaging(0.895) TCGA-FU-A3EO-01 2 80831287 80831287 C T CTNNA2 Missense_Mutation p.R760C 0.19 deleterious(0) probably_damaging(0.993) TCGA-FU-A3EO-01 2 86315726 86315727 CA - POLR1A Frame_Shift_Del p.V231Afs*10 0.32 TCGA-FU-A3EO-01 3 183041027 183041027 C T MCF2L2 Missense_Mutation p.R200H 0.49 deleterious(0) probably_damaging(0.996) TCGA-FU-A3EO-01 4 151818937 151818937 G C LRBA Missense_Mutation p.S653C 0.30 deleterious(0) probably_damaging(0.998) TCGA-FU-A3EO-01 5 128957956 128957956 C T ADAMTS19 Missense_Mutation p.S556F 0.10 deleterious(0.02) possibly_damaging(0.661) TCGA-FU-A3EO-01 5 14477003 14477003 C G TRIO Missense_Mutation p.D2028E 0.29 benign(0.003) TCGA-FU-A3EO-01 5 160047923 160047923 G A ATP10B Missense_Mutation p.T616M 0.38 tolerated(0.1) benign(0.045) TCGA-FU-A3EO-01 5 167674062 167674062 T C TENM2 Missense_Mutation p.F2040L 0.29 tolerated(0.11) probably_damaging(0.995) TCGA-FU-A3EO-01 5 80497154 80497154 C T RASGRF2 Silent p.F933F 0.29 TCGA-FU-A3EO-01 6 117888189 117888189 C T GOPC Silent p.E362E 0.18 TCGA-FU-A3EO-01 6 45517289 45517289 G T RUNX2 3'UTR 0.62 TCGA-FU-A3EO-01 7 128494890 128494890 T C FLNC Silent p.G2353G 0.33 TCGA-FU-A3EO-01 7 128612587 128612587 G T TNPO3 Missense_Mutation p.P775T 0.33 tolerated(0.12) benign(0.004) TCGA-FU-A3EO-01 7 21639564 21639564 T C DNAH11 Missense_Mutation p.F943L 0.37 benign(0.003) TCGA-FU-A3EO-01 7 30702340 30702340 G A CRHR2 Missense_Mutation p.R250C 0.07 deleterious(0) probably_damaging(0.961) TCGA-FU-A3EO-01 7 35293127 35293127 C T TBX20 Silent p.T35T 0.39 TCGA-FU-A3EO-01 8 10754287 10754287 A T XKR6 3'UTR 0.44 TCGA-FU-A3EO-01 8 59520362 59520362 C T NSMAF Missense_Mutation p.R273H 0.58 deleterious(0.01) benign(0.111) TCGA-FU-A3EO-01 9 88257843 88257843 T C AGTPBP1 Missense_Mutation p.T361A 0.45 deleterious(0.01) probably_damaging(0.989) TCGA-FU-A3EO-01 X 100169813 100169813 G A XKRX Silent p.F288F 0.22 TCGA-FU-A3EO-01 X 105937389 105937389 G A RNF128 Missense_Mutation p.V26I 0.25 tolerated(0.11) benign(0.01) TCGA-FU-A3EO-01 X 122765673 122765673 A C THOC2 Missense_Mutation p.F783V 0.13 deleterious(0) probably_damaging(0.996) TCGA-FU-A3EO-01 X 129199187 129199187 C A ELF4 3'UTR 0.33 TCGA-FU-A3EO-01 X 12995267 12995268 - T TMSB4X 3'UTR 0.33 TCGA-FU-A3EO-01 X 154290189 154290189 T G CMC4 Silent p.R46R 0.33 TCGA-FU-A3EO-01 X 55479014 55479014 G A MAGEH1 Silent p.S69S 0.42 TCGA-FU-A3EO-01 X 72224245 72224245 G A PABPC1L2B 3'UTR 0.13 TCGA-FU-A3EO-01 X 99926030 99926030 T C SRPX2 3'UTR 0.21 TCGA-FU-A3HY-01 10 102762232 102762232 G A LZTS2 5'UTR 0.21 TCGA-FU-A3HY-01 10 22610605 22610605 C G BMI1 5'UTR 0.16 TCGA-FU-A3HY-01 10 22616899 22616899 G C BMI1 Missense_Mutation p.D113H 0.16 deleterious(0) benign(0.248) TCGA-FU-A3HY-01 10 75527640 75527640 G C SEC24C Missense_Mutation p.E686Q 0.19 deleterious(0.04) possibly_damaging(0.656) TCGA-FU-A3HY-01 10 7791170 7791170 G A ITIH2 Missense_Mutation p.R905K 0.29 deleterious(0.01) possibly_damaging(0.734) TCGA-FU-A3HY-01 10 98773558 98773558 G C SLIT1 Missense_Mutation p.S1048C 0.31 tolerated(0.06) benign(0.009) TCGA-FU-A3HY-01 11 118395246 118395246 C T KMT2A 3'UTR 0.27 TCGA-FU-A3HY-01 11 120356573 120356573 C T ARHGEF12 3'UTR 0.13 TCGA-FU-A3HY-01 11 134134869 134134869 C T ACAD8 3'UTR 0.20 TCGA-FU-A3HY-01 11 134175090 134175090 C T GLB1L3 Intron 0.39 TCGA-FU-A3HY-01 11 20005703 20005703 C A NAV2 Missense_Mutation p.T916N 0.19 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HY-01 11 30937082 30937082 C T DCDC1 Missense_Mutation p.R1210H 0.34 tolerated(0.16) possibly_damaging(0.715) TCGA-FU-A3HY-01 11 32461152 32461152 G C WT1 5'Flank 0.24 TCGA-FU-A3HY-01 11 3707274 3707274 G A NUP98 Silent p.Y1535Y 0.13 TCGA-FU-A3HY-01 11 45919684 45919684 G A MAPK8IP1 Silent p.S50S 0.22 TCGA-FU-A3HY-01 11 55861336 55861336 G T OR8I2 Missense_Mutation p.A185S 0.37 tolerated(0.09) benign(0.361) TCGA-FU-A3HY-01 11 57235245 57235245 C G RTN4RL2 Silent p.L65L 0.19 TCGA-FU-A3HY-01 11 605255 605255 C G PHRF1 Missense_Mutation p.S430C 0.40 deleterious(0) probably_damaging(0.982) TCGA-FU-A3HY-01 11 61504725 61504725 C G DAGLA Silent p.L481L 0.27 TCGA-FU-A3HY-01 11 62571442 62571442 C G NXF1 Missense_Mutation p.D13H 0.23 deleterious(0.01) probably_damaging(1) TCGA-FU-A3HY-01 11 63884108 63884108 C G FLRT1 Missense_Mutation p.I123M 0.54 tolerated(0.44) benign(0.015) TCGA-FU-A3HY-01 11 70332901 70332901 G A SHANK2 Missense_Mutation p.P1167L 0.31 tolerated(0.07) benign(0.031) TCGA-FU-A3HY-01 11 7079068 7079068 G C NLRP14 Missense_Mutation p.E818Q 0.17 tolerated(0.78) benign(0.139) TCGA-FU-A3HY-01 11 76255554 76255554 C G C11orf30 Silent p.L987L 0.17 TCGA-FU-A3HY-01 12 100813787 100813787 G T SLC17A8 Silent p.A540A 0.26 TCGA-FU-A3HY-01 12 101760358 101760358 G A UTP20 Missense_Mutation p.D2050N 0.23 deleterious(0.04) benign(0.111) TCGA-FU-A3HY-01 12 102025848 102025848 G A MYBPC1 Missense_Mutation p.G138E 0.22 deleterious(0) probably_damaging(1) TCGA-FU-A3HY-01 12 120875972 120875972 C T COX6A1 Missense_Mutation p.R15W 0.27 tolerated(0.14) unknown(0) TCGA-FU-A3HY-01 12 133779005 133779005 G C ZNF268 Missense_Mutation p.G245R 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-FU-A3HY-01 12 24102511 24102511 G A SOX5 Nonsense_Mutation p.Q9* 0.25 TCGA-FU-A3HY-01 12 48457495 48457495 C T SENP1 Missense_Mutation p.E469K 0.49 deleterious(0) possibly_damaging(0.789) TCGA-FU-A3HY-01 12 51065095 51065095 C T DIP2B Missense_Mutation p.S185F 0.21 deleterious(0) probably_damaging(0.928) TCGA-FU-A3HY-01 12 53579820 53579820 G A ZNF740 Missense_Mutation p.R111Q 0.33 deleterious(0) benign(0.238) TCGA-FU-A3HY-01 12 56295840 56295840 G C WIBG Nonsense_Mutation p.S144* 0.11 TCGA-FU-A3HY-01 12 57850121 57850121 G A INHBE Silent p.E181E 0.19 TCGA-FU-A3HY-01 12 6666539 6666539 C T NOP2 Missense_Mutation p.E720K 0.26 tolerated_low_confidence(0.67) benign(0.005) TCGA-FU-A3HY-01 12 81746991 81746991 G A PPFIA2 Missense_Mutation p.S634L 0.36 deleterious(0.02) possibly_damaging(0.607) TCGA-FU-A3HY-01 12 89890968 89890968 C T POC1B Silent p.V84V 0.28 TCGA-FU-A3HY-01 12 94543544 94543544 G T PLXNC1 Missense_Mutation p.R266L 0.26 tolerated(0.18) benign(0.021) TCGA-FU-A3HY-01 12 96052675 96052675 C G NTN4 3'UTR 0.30 TCGA-FU-A3HY-01 13 100637226 100637226 G C ZIC2 Missense_Mutation p.E368Q 0.26 tolerated(0.06) probably_damaging(0.977) TCGA-FU-A3HY-01 13 24896058 24896058 T C C1QTNF9 3'UTR 0.50 TCGA-FU-A3HY-01 13 41130700 41130700 C G FOXO1 3'UTR 0.12 TCGA-FU-A3HY-01 13 73345042 73345042 C T DIS3 Silent p.K585K 0.21 TCGA-FU-A3HY-01 13 95055785 95055785 C T GPC6 3'UTR 0.29 TCGA-FU-A3HY-01 14 103180763 103180763 C T RCOR1 Missense_Mutation p.P288S 0.12 tolerated(0.39) benign(0.013) TCGA-FU-A3HY-01 14 106518640 106518640 C T IGHV3-7 Silent p.L37L 0.12 TCGA-FU-A3HY-01 14 20404322 20404322 T C OR4K1 Missense_Mutation p.L166P 0.29 deleterious(0) benign(0.168) TCGA-FU-A3HY-01 14 20767589 20767591 AGG - TTC5 In_Frame_Del p.S138del 0.33 TCGA-FU-A3HY-01 14 20849739 20849739 C G TEP1 Missense_Mutation p.E1511Q 0.19 tolerated(0.17) benign(0.035) TCGA-FU-A3HY-01 14 21853407 21853407 C T CHD8 3'UTR 0.40 TCGA-FU-A3HY-01 14 50886280 50886280 C G MAP4K5 3'UTR 0.08 TCGA-FU-A3HY-01 14 55509864 55509864 G A SOCS4 Silent p.K35K 0.16 TCGA-FU-A3HY-01 14 55509907 55509907 G A SOCS4 Missense_Mutation p.E50K 0.17 tolerated(0.24) benign(0.176) TCGA-FU-A3HY-01 14 58030696 58030696 G A SLC35F4 3'UTR 0.14 TCGA-FU-A3HY-01 14 63174130 63174130 C T KCNH5 3'UTR 0.23 TCGA-FU-A3HY-01 14 74824599 74824599 G A VRTN Missense_Mutation p.M371I 0.17 tolerated(0.25) benign(0) TCGA-FU-A3HY-01 14 74824609 74824609 G C VRTN Missense_Mutation p.E375Q 0.17 tolerated(0.16) benign(0.007) TCGA-FU-A3HY-01 14 74824914 74824914 G A VRTN Silent p.K476K 0.16 TCGA-FU-A3HY-01 14 75515090 75515090 C T MLH3 Silent p.Q423Q 0.22 TCGA-FU-A3HY-01 14 77490954 77490954 G A IRF2BPL 3'UTR 0.12 TCGA-FU-A3HY-01 14 89181361 89181361 G A EML5 Missense_Mutation p.H456Y 0.13 deleterious(0) probably_damaging(0.92) TCGA-FU-A3HY-01 14 94754777 94754777 C G SERPINA10 Missense_Mutation p.D280H 0.14 deleterious(0) probably_damaging(1) TCGA-FU-A3HY-01 14 95570075 95570075 G A DICER1 Nonsense_Mutation p.Q1220* 0.10 TCGA-FU-A3HY-01 15 41063832 41063832 C G C15orf62 3'UTR 0.60 TCGA-FU-A3HY-01 15 42067565 42067565 G A MAPKBP1 Missense_Mutation p.R31Q 0.48 tolerated(0.13) benign(0.161) TCGA-FU-A3HY-01 15 44066430 44066430 C T ELL3 Missense_Mutation p.E330K 0.40 tolerated(0.41) possibly_damaging(0.742) TCGA-FU-A3HY-01 15 64217033 64217033 G C DAPK2 Silent p.L280L 0.21 TCGA-FU-A3HY-01 15 75760878 75760878 G A PTPN9 3'UTR 0.09 TCGA-FU-A3HY-01 15 75760885 75760885 G A PTPN9 3'UTR 0.11 TCGA-FU-A3HY-01 15 76209576 76209576 C G FBXO22 Missense_Mutation p.P157A 0.20 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HY-01 15 82443950 82443950 G A EFTUD1 Missense_Mutation p.P949S 0.23 tolerated(1) benign(0) TCGA-FU-A3HY-01 16 10971118 10971118 G T CIITA 5'UTR 0.26 TCGA-FU-A3HY-01 16 14029051 14029051 G A ERCC4 Missense_Mutation p.R421K 0.33 tolerated(0.66) benign(0.003) TCGA-FU-A3HY-01 16 16130348 16130348 C T ABCC1 Missense_Mutation p.R233C 0.18 deleterious(0) possibly_damaging(0.841) TCGA-FU-A3HY-01 16 1825361 1825361 G A EME2 Silent p.P205P 0.16 TCGA-FU-A3HY-01 16 20410556 20410556 C T PDILT Missense_Mutation p.E23K 0.39 tolerated(0.22) benign(0.004) TCGA-FU-A3HY-01 16 27519901 27519901 C G GTF3C1 Missense_Mutation p.R401T 0.21 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HY-01 16 28506478 28506478 G A APOBR Missense_Mutation p.R39Q 0.11 deleterious(0.04) benign(0.177) TCGA-FU-A3HY-01 16 3071954 3071954 G A TNFRSF12A 3'UTR 0.16 TCGA-FU-A3HY-01 16 31008859 31008859 G C STX1B Missense_Mutation p.N106K 0.18 tolerated(0.18) benign(0.03) TCGA-FU-A3HY-01 16 3451889 3451889 C T ZNF174 5'UTR 0.30 TCGA-FU-A3HY-01 16 48385529 48385529 G C LONP2 Missense_Mutation p.R792T 0.30 deleterious(0) probably_damaging(1) TCGA-FU-A3HY-01 16 4935649 4935649 C G PPL Missense_Mutation p.D1003H 0.23 deleterious(0) probably_damaging(1) TCGA-FU-A3HY-01 16 68598252 68598252 G C ZFP90 Missense_Mutation p.G521A 0.24 deleterious(0) possibly_damaging(0.857) TCGA-FU-A3HY-01 16 7760730 7760730 C T RBFOX1 Missense_Mutation p.R414C 0.30 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HY-01 17 16703657 16703657 C T CCDC144A 3'UTR 0.11 TCGA-FU-A3HY-01 17 27589694 27589694 C G NUFIP2 3'UTR 0.11 TCGA-FU-A3HY-01 17 31438962 31438962 C T ASIC2 Missense_Mutation p.E278K 0.38 deleterious(0) probably_damaging(0.972) TCGA-FU-A3HY-01 17 37077225 37077225 C G LASP1 3'UTR 0.39 TCGA-FU-A3HY-01 17 39296450 39296450 G A KRTAP4-6 Missense_Mutation p.S97F 0.17 deleterious(0) unknown(0) TCGA-FU-A3HY-01 17 41606046 41606046 G A ETV4 Silent p.F432F 0.11 TCGA-FU-A3HY-01 17 44249074 44249074 G C KANSL1 Missense_Mutation p.Q146E 0.09 tolerated(0.07) possibly_damaging(0.774) TCGA-FU-A3HY-01 17 50235158 50235158 C T CA10 5'UTR 0.16 TCGA-FU-A3HY-01 17 60023513 60023513 C T MED13 3'UTR 0.23 TCGA-FU-A3HY-01 17 66040606 66040606 C G KPNA2 Nonsense_Mutation p.S445* 0.04 TCGA-FU-A3HY-01 17 72519540 72519540 G A CD300LB Intron 0.24 TCGA-FU-A3HY-01 17 73481598 73481598 C T KIAA0195 Silent p.L38L 0.15 TCGA-FU-A3HY-01 17 73482023 73482023 C T KIAA0195 Silent p.L72L 0.22 TCGA-FU-A3HY-01 17 7679425 7679425 C A DNAH2 Missense_Mutation p.F1635L 0.29 benign(0.001) TCGA-FU-A3HY-01 17 8377637 8377637 C G MYH10 3'UTR 0.41 TCGA-FU-A3HY-01 17 9850223 9850223 G A GAS7 Silent p.C201C 0.35 TCGA-FU-A3HY-01 18 50705389 50705389 G A DCC Silent p.L492L 0.16 TCGA-FU-A3HY-01 18 5397314 5397314 G A EPB41L3 Missense_Mutation p.R862C 0.21 deleterious(0.02) benign(0.339) TCGA-FU-A3HY-01 18 56033348 56033348 G C NEDD4L Missense_Mutation p.E651Q 0.21 deleterious(0) probably_damaging(0.995) TCGA-FU-A3HY-01 18 67996892 67996892 C A SOCS6 3'UTR 0.27 TCGA-FU-A3HY-01 18 72999842 72999842 C T TSHZ1 Missense_Mutation p.S782L 0.36 tolerated(0.05) benign(0.029) TCGA-FU-A3HY-01 18 9255242 9255242 G A ANKRD12 Silent p.E659E 0.35 TCGA-FU-A3HY-01 19 11457282 11457282 G C CCDC159 5'UTR 0.17 TCGA-FU-A3HY-01 19 11465575 11465575 G T CCDC159 3'UTR 0.31 TCGA-FU-A3HY-01 19 12875631 12875631 G A HOOK2 Silent p.R608R 0.26 TCGA-FU-A3HY-01 19 15226402 15226402 G A ILVBL Silent p.N565N 0.33 TCGA-FU-A3HY-01 19 19905635 19905635 G C ZNF506 Nonsense_Mutation p.S354* 0.42 TCGA-FU-A3HY-01 19 30935982 30935982 C T ZNF536 Missense_Mutation p.R505W 0.32 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HY-01 19 33370085 33370085 G A CEP89 Missense_Mutation p.H779Y 0.32 tolerated(1) benign(0.006) TCGA-FU-A3HY-01 19 38055835 38055835 C T ZNF571 Missense_Mutation p.E499K 0.11 tolerated(0.07) probably_damaging(0.966) TCGA-FU-A3HY-01 19 40732571 40732571 G A CNTD2 5'UTR 0.33 TCGA-FU-A3HY-01 19 41903118 41903118 G A EXOSC5 Missense_Mutation p.S39L 0.21 deleterious(0) probably_damaging(0.984) TCGA-FU-A3HY-01 19 44571244 44571244 C G ZNF223 Silent p.L421L 0.14 TCGA-FU-A3HY-01 19 47588345 47588345 C T ZC3H4 Missense_Mutation p.D359N 0.06 unknown(0) TCGA-FU-A3HY-01 19 51767223 51767223 C T SIGLECL1 5'UTR 0.15 TCGA-FU-A3HY-01 19 54445319 54445319 C T CACNG7 Silent p.F200F 0.28 TCGA-FU-A3HY-01 19 54803494 54803494 G T LILRA3 Missense_Mutation p.S110R 0.65 tolerated(0.75) benign(0.034) TCGA-FU-A3HY-01 19 55142034 55142034 G A LILRB1 5'UTR 0.21 TCGA-FU-A3HY-01 19 56701163 56701163 C A ZSCAN5B 3'UTR 0.27 TCGA-FU-A3HY-01 19 58384363 58384363 G T ZNF814 Missense_Mutation p.P799T 0.24 deleterious(0.02) probably_damaging(0.987) TCGA-FU-A3HY-01 19 58773145 58773145 G T ZNF544 Missense_Mutation p.Q391H 0.24 tolerated(0.12) probably_damaging(0.997) TCGA-FU-A3HY-01 19 58963053 58963053 G C ZNF324B 5'UTR 0.19 TCGA-FU-A3HY-01 19 9082960 9082960 G C MUC16 Nonsense_Mutation p.S2952* 0.17 TCGA-FU-A3HY-01 1 100488414 100488414 C A SLC35A3 3'UTR 0.16 TCGA-FU-A3HY-01 1 108315446 108315446 C T VAV3 Missense_Mutation p.E156K 0.23 tolerated(0.06) benign(0.184) TCGA-FU-A3HY-01 1 110765849 110765849 C G KCNC4 Silent p.L314L 0.31 TCGA-FU-A3HY-01 1 150523265 150523265 G A AL356356.1 Missense_Mutation p.R65H 0.32 unknown(0) TCGA-FU-A3HY-01 1 155874548 155874548 G C RIT1 Missense_Mutation p.L88V 0.32 deleterious(0.01) probably_damaging(0.969) TCGA-FU-A3HY-01 1 156209491 156209491 G A PMF1 Intron 0.38 TCGA-FU-A3HY-01 1 1563770 1563770 C T MIB2 Silent p.L768L 0.24 TCGA-FU-A3HY-01 1 158151385 158151385 C T CD1D Silent p.L68L 0.27 TCGA-FU-A3HY-01 1 15855639 15855639 G C DNAJC16 Missense_Mutation p.L13F 0.28 deleterious(0.04) benign(0.154) TCGA-FU-A3HY-01 1 158687490 158687490 C T OR6K3 Missense_Mutation p.R139Q 0.48 tolerated(0.53) benign(0.023) TCGA-FU-A3HY-01 1 161072116 161072116 G T PFDN2 Missense_Mutation p.S42Y 0.23 deleterious(0) possibly_damaging(0.566) TCGA-FU-A3HY-01 1 162740113 162740113 G A DDR2 Missense_Mutation p.D439N 0.27 tolerated(0.08) possibly_damaging(0.786) TCGA-FU-A3HY-01 1 171173052 171173052 G A FMO2 Missense_Mutation p.E226K 0.26 deleterious(0.04) benign(0.024) TCGA-FU-A3HY-01 1 17371366 17371366 C G SDHB Missense_Mutation p.Q30H 0.32 tolerated_low_confidence(0.25) benign(0.016) TCGA-FU-A3HY-01 1 183521230 183521230 C T SMG7 Intron 0.33 TCGA-FU-A3HY-01 1 183521703 183521703 C G SMG7 Intron 0.29 TCGA-FU-A3HY-01 1 206579930 206579930 C T SRGAP2 Silent p.F365F 0.11 TCGA-FU-A3HY-01 1 22021695 22021695 C T USP48 Missense_Mutation p.R916Q 0.09 deleterious(0.02) benign(0.102) TCGA-FU-A3HY-01 1 22329579 22329579 C T CELA3A Nonsense_Mutation p.Q43* 0.11 TCGA-FU-A3HY-01 1 233497990 233497990 G C MLK4 Missense_Mutation p.K501N 0.15 deleterious(0) possibly_damaging(0.756) TCGA-FU-A3HY-01 1 236208917 236208917 C A NID1 Nonsense_Mutation p.E198* 0.31 TCGA-FU-A3HY-01 1 23640126 23640126 C T HNRNPR Missense_Mutation p.E366K 0.17 tolerated(0.25) benign(0.039) TCGA-FU-A3HY-01 1 240656728 240656728 C T GREM2 Silent p.V16V 0.19 TCGA-FU-A3HY-01 1 71538207 71538207 C G ZRANB2 Missense_Mutation p.R109T 0.14 deleterious(0) probably_damaging(0.978) TCGA-FU-A3HY-01 1 94466477 94466477 C G ABCA4 Missense_Mutation p.E2132Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HY-01 20 34542564 34542564 G A SCAND1 5'UTR 0.20 TCGA-FU-A3HY-01 20 43118226 43118226 C G TTPAL 3'UTR 0.20 TCGA-FU-A3HY-01 20 48604599 48604599 G A SNAI1 3'UTR 0.20 TCGA-FU-A3HY-01 20 50139763 50139763 G A NFATC2 Silent p.A339A 0.32 TCGA-FU-A3HY-01 20 54823970 54823970 C T MC3R Missense_Mutation p.P24L 0.43 tolerated(0.12) benign(0.118) TCGA-FU-A3HY-01 20 54945192 54945192 G C AURKA 3'UTR 0.20 TCGA-FU-A3HY-01 20 54945266 54945266 G A AURKA Missense_Mutation p.S387L 0.20 deleterious(0.02) possibly_damaging(0.653) TCGA-FU-A3HY-01 21 38528979 38528979 C G TTC3 Missense_Mutation p.F921L 0.17 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HY-01 21 38529195 38529195 C G TTC3 Missense_Mutation p.F993L 0.25 deleterious(0) probably_damaging(0.994) TCGA-FU-A3HY-01 21 46935802 46935802 G A SLC19A1 Silent p.L516L 0.36 TCGA-FU-A3HY-01 21 47706844 47706844 G C YBEY Missense_Mutation p.R6T 0.18 deleterious(0) possibly_damaging(0.644) TCGA-FU-A3HY-01 22 18028884 18028884 A G CECR2 Missense_Mutation p.N1282D 0.13 deleterious(0) possibly_damaging(0.848) TCGA-FU-A3HY-01 22 19423532 19423532 G A MRPL40 3'UTR 0.21 TCGA-FU-A3HY-01 22 28494913 28494913 G A TTC28 Silent p.L1179L 0.24 TCGA-FU-A3HY-01 22 32193604 32193604 G C DEPDC5 Missense_Mutation p.E262D 0.14 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HY-01 22 41569751 41569751 C T EP300 Missense_Mutation p.S1581L 0.16 probably_damaging(0.928) TCGA-FU-A3HY-01 22 48972235 48972235 C T FAM19A5 Intron 0.35 TCGA-FU-A3HY-01 2 100217938 100217938 C G AFF3 Missense_Mutation p.E469Q 0.39 deleterious(0.01) possibly_damaging(0.856) TCGA-FU-A3HY-01 2 128699103 128699103 G A SAP130 3'UTR 0.32 TCGA-FU-A3HY-01 2 152432303 152432303 C G NEB Missense_Mutation p.R5640T 0.20 possibly_damaging(0.894) TCGA-FU-A3HY-01 2 175301030 175301030 C T GPR155 Silent p.L809L 0.17 TCGA-FU-A3HY-01 2 178301609 178301609 C T AGPS Missense_Mutation p.H187Y 0.24 deleterious(0) benign(0.325) TCGA-FU-A3HY-01 2 179454853 179454853 C T TTN Silent p.E20533E 0.35 TCGA-FU-A3HY-01 2 179577844 179577844 G A TTN Missense_Mutation p.S9006F 0.26 TCGA-FU-A3HY-01 2 201761901 201761901 C T NIF3L1 Missense_Mutation p.H277Y 0.22 tolerated(0.12) benign(0.014) TCGA-FU-A3HY-01 2 203395559 203395559 G T BMPR2 Missense_Mutation p.R337I 0.71 deleterious(0) benign(0.302) TCGA-FU-A3HY-01 2 203431141 203431141 C T BMPR2 3'UTR 0.22 TCGA-FU-A3HY-01 2 209224740 209224740 C G PIKFYVE 3'Flank 0.41 TCGA-FU-A3HY-01 2 210885274 210885274 C G RPE 3'UTR 0.31 TCGA-FU-A3HY-01 2 218858 218858 G A SH3YL1 Nonsense_Mutation p.R328* 0.51 TCGA-FU-A3HY-01 2 220418361 220418361 C T OBSL1 Missense_Mutation p.E1642K 0.22 tolerated(0.06) probably_damaging(0.937) TCGA-FU-A3HY-01 2 238662113 238662113 G C LRRFIP1 Missense_Mutation p.E215D 0.14 tolerated(0.07) possibly_damaging(0.773) TCGA-FU-A3HY-01 2 241463253 241463253 C T ANKMY1 Intron 0.12 TCGA-FU-A3HY-01 2 242511895 242511895 C G BOK 3'UTR 0.27 TCGA-FU-A3HY-01 2 25505239 25505239 G C DNMT3A Intron 0.20 TCGA-FU-A3HY-01 2 27165544 27165544 G A DPYSL5 Missense_Mutation p.E456K 0.13 tolerated(0.43) benign(0.091) TCGA-FU-A3HY-01 2 31483537 31483537 G A EHD3 Missense_Mutation p.D222N 0.50 deleterious(0) possibly_damaging(0.799) TCGA-FU-A3HY-01 2 71577290 71577290 G C ZNF638 Missense_Mutation p.Q402H 0.15 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HY-01 2 73675141 73675141 C T ALMS1 Missense_Mutation p.S495L 0.15 benign(0.204) TCGA-FU-A3HY-01 2 74684521 74684521 G A INO80B Missense_Mutation p.E201K 0.12 tolerated(0.71) benign(0.007) TCGA-FU-A3HY-01 2 89417048 89417048 G A IGKV1-17 Missense_Mutation p.R46W 0.77 deleterious(0.03) benign(0.2) TCGA-FU-A3HY-01 2 96944427 96944427 C T SNRNP200 Silent p.S1782S 0.27 TCGA-FU-A3HY-01 3 100994515 100994515 C G IMPG2 Missense_Mutation p.E220Q 0.28 tolerated(0.06) benign(0.017) TCGA-FU-A3HY-01 3 111710503 111710503 G A ABHD10 Missense_Mutation p.D286N 0.20 deleterious(0.03) possibly_damaging(0.882) TCGA-FU-A3HY-01 3 132172164 132172164 G C DNAJC13 Missense_Mutation p.R187T 0.11 tolerated(0.2) benign(0.016) TCGA-FU-A3HY-01 3 136056500 136056500 G A STAG1 3'UTR 0.19 TCGA-FU-A3HY-01 3 147131190 147131190 C T ZIC1 Missense_Mutation p.S399F 0.19 deleterious(0) benign(0.142) TCGA-FU-A3HY-01 3 151545594 151545594 C T AADAC Silent p.F278F 0.25 TCGA-FU-A3HY-01 3 170875260 170875260 G A TNIK Missense_Mutation p.R404W 0.33 deleterious(0.03) unknown(0) TCGA-FU-A3HY-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.41 tolerated(0.44) benign(0.085) TCGA-FU-A3HY-01 3 182988887 182988887 C T B3GNT5 3'UTR 0.11 TCGA-FU-A3HY-01 3 195506863 195506863 G A MUC4 Missense_Mutation p.S3863F 0.32 possibly_damaging(0.496) TCGA-FU-A3HY-01 3 45812709 45812709 T G SLC6A20 Missense_Mutation p.K312T 0.28 tolerated(0.36) possibly_damaging(0.672) TCGA-FU-A3HY-01 3 47884655 47884655 C G DHX30 Silent p.L283L 0.32 TCGA-FU-A3HY-01 3 4856756 4856756 G C ITPR1 Missense_Mutation p.R2559T 0.44 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HY-01 3 49847050 49847050 C T UBA7 Silent p.A671A 0.24 TCGA-FU-A3HY-01 3 791918 791918 C A AC090044.1 RNA 0.14 TCGA-FU-A3HY-01 3 9519798 9519798 G C SETD5 3'UTR 0.31 TCGA-FU-A3HY-01 4 100844268 100844268 G A DNAJB14 Missense_Mutation p.A127V 0.26 deleterious(0) probably_damaging(1) TCGA-FU-A3HY-01 4 126371758 126371758 C T FAT4 Missense_Mutation p.S3196F 0.07 benign(0.212) TCGA-FU-A3HY-01 4 13606503 13606503 C G BOD1L1 Missense_Mutation p.R674T 0.34 possibly_damaging(0.848) TCGA-FU-A3HY-01 4 154216995 154216995 C T TRIM2 Silent p.I439I 0.17 TCGA-FU-A3HY-01 4 155525890 155525890 G C FGG 3'UTR 0.17 TCGA-FU-A3HY-01 4 160262865 160262865 G A RAPGEF2 Missense_Mutation p.R734H 0.23 deleterious(0.02) possibly_damaging(0.473) TCGA-FU-A3HY-01 4 184182333 184182333 G C WWC2 Missense_Mutation p.Q519H 0.21 tolerated(0.59) benign(0.005) TCGA-FU-A3HY-01 4 39458080 39458080 C T RPL9 Missense_Mutation p.E113K 0.22 deleterious(0.01) possibly_damaging(0.629) TCGA-FU-A3HY-01 4 73156717 73156717 C T ADAMTS3 Missense_Mutation p.R929H 0.47 deleterious(0) probably_damaging(0.992) TCGA-FU-A3HY-01 4 78979107 78979107 G A FRAS1 5'UTR 0.18 TCGA-FU-A3HY-01 4 88902911 88902911 G A SPP1 Silent p.L167L 0.28 TCGA-FU-A3HY-01 4 89363478 89363478 C T HERC6 Missense_Mutation p.H979Y 0.09 tolerated(1) benign(0.004) TCGA-FU-A3HY-01 5 108704312 108704312 A G PJA2 Silent p.S473S 0.30 TCGA-FU-A3HY-01 5 127613633 127613633 G T FBN2 Silent p.G2470G 0.59 TCGA-FU-A3HY-01 5 131825132 131825132 C G IRF1 Missense_Mutation p.E13D 0.33 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HY-01 5 132232824 132232824 G C AFF4 Missense_Mutation p.Q500E 0.10 tolerated(0.16) probably_damaging(0.987) TCGA-FU-A3HY-01 5 13717460 13717460 G A DNAH5 Silent p.F4223F 0.16 TCGA-FU-A3HY-01 5 140502130 140502130 C G PCDHB4 Missense_Mutation p.H184D 0.70 tolerated(0.06) benign(0.028) TCGA-FU-A3HY-01 5 140683187 140683187 G A SLC25A2 Silent p.F82F 0.40 TCGA-FU-A3HY-01 5 150029687 150029687 C T SYNPO Missense_Mutation p.S861L 0.65 tolerated(0.06) benign(0.176) TCGA-FU-A3HY-01 5 168176634 168176634 G C SLIT3 Silent p.L660L 0.62 TCGA-FU-A3HY-01 5 179078924 179078924 C T AC136604.1 Missense_Mutation p.S136L 0.06 tolerated(0.15) possibly_damaging(0.504) TCGA-FU-A3HY-01 5 19571833 19571833 G C CDH18 Missense_Mutation p.L370V 0.06 tolerated(1) probably_damaging(0.999) TCGA-FU-A3HY-01 5 31534505 31534505 G C C5orf22 Missense_Mutation p.D70H 0.12 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HY-01 5 35814619 35814619 G C SPEF2 Missense_Mutation p.E1811D 0.23 deleterious(0.02) probably_damaging(0.978) TCGA-FU-A3HY-01 5 87494811 87494811 C T TMEM161B Silent p.T357T 0.65 TCGA-FU-A3HY-01 5 89813848 89813848 A C LYSMD3 3'UTR 0.53 TCGA-FU-A3HY-01 6 132004303 132004303 G T ENPP3 Splice_Site p.X374_splice 0.43 TCGA-FU-A3HY-01 6 136960726 136960726 G A MAP3K5 Missense_Mutation p.S630F 0.33 tolerated(0.05) possibly_damaging(0.713) TCGA-FU-A3HY-01 6 158538838 158538838 C G SERAC1 Missense_Mutation p.D442H 0.12 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HY-01 6 29911954 29911954 G C HLA-A Silent p.L225L 0.14 TCGA-FU-A3HY-01 6 33281142 33281142 G A TAPBP Silent p.S107S 0.47 TCGA-FU-A3HY-01 6 57054534 57054534 A G BAG2 3'UTR 0.75 TCGA-FU-A3HY-01 6 72984074 72984074 G A RIMS1 Missense_Mutation p.D1141N 0.39 tolerated(0.15) benign(0.007) TCGA-FU-A3HY-01 6 7590611 7590611 G C SNRNP48 Missense_Mutation p.D41H 0.19 deleterious(0.01) possibly_damaging(0.625) TCGA-FU-A3HY-01 7 100320831 100320831 C G EPO 3'UTR 0.25 TCGA-FU-A3HY-01 7 107706884 107706884 C T LAMB4 Missense_Mutation p.E870K 0.17 deleterious(0.03) probably_damaging(0.998) TCGA-FU-A3HY-01 7 123303077 123303077 G C LMOD2 Missense_Mutation p.K479N 0.17 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HY-01 7 128526780 128526780 G C KCP RNA 0.14 TCGA-FU-A3HY-01 7 133502139 133502139 G A EXOC4 Missense_Mutation p.E526K 0.24 tolerated(0.77) benign(0.223) TCGA-FU-A3HY-01 7 137801416 137801416 G A AKR1D1 3'UTR 0.28 TCGA-FU-A3HY-01 7 139791674 139791674 G A KDM7A Silent p.F887F 0.16 TCGA-FU-A3HY-01 7 14216524 14216524 C T DGKB Silent p.R749R 0.21 TCGA-FU-A3HY-01 7 142168513 142168513 C T TRBV5-4 Silent p.R70R 0.28 TCGA-FU-A3HY-01 7 142575435 142575435 G C TRPV6 Silent p.V106V 0.38 TCGA-FU-A3HY-01 7 155095546 155095546 C T INSIG1 Intron 0.25 TCGA-FU-A3HY-01 7 26678723 26678723 C G C7orf71 5'UTR 0.23 TCGA-FU-A3HY-01 7 74824208 74824208 G C GATSL2 Missense_Mutation p.I53M 0.19 deleterious(0.01) benign(0.299) TCGA-FU-A3HY-01 7 8474109 8474109 G T NXPH1 5'UTR 0.16 TCGA-FU-A3HY-01 7 87912107 87912107 C T STEAP4 Missense_Mutation p.R278Q 0.12 deleterious(0.03) possibly_damaging(0.595) TCGA-FU-A3HY-01 7 8792069 8792069 G A NXPH1 3'UTR 0.16 TCGA-FU-A3HY-01 8 128747972 128747972 C A MYC 5'Flank 0.23 TCGA-FU-A3HY-01 8 131073096 131073096 T C ASAP1 Missense_Mutation p.K974R 0.44 tolerated(0.18) possibly_damaging(0.554) TCGA-FU-A3HY-01 8 139190862 139190862 C G FAM135B Missense_Mutation p.M315I 0.35 tolerated(0.11) benign(0.1) TCGA-FU-A3HY-01 8 144645049 144645049 C T GSDMD Missense_Mutation p.S477L 0.19 tolerated(0.74) benign(0.002) TCGA-FU-A3HY-01 8 17087865 17087865 G C CNOT7 3'UTR 0.16 TCGA-FU-A3HY-01 8 25897612 25897612 G A EBF2 Silent p.I138I 0.11 TCGA-FU-A3HY-01 8 3263717 3263717 G A CSMD1 Missense_Mutation p.P700S 0.26 probably_damaging(0.999) TCGA-FU-A3HY-01 8 3267035 3267035 C G CSMD1 Missense_Mutation p.E552Q 0.18 possibly_damaging(0.892) TCGA-FU-A3HY-01 8 73979488 73979488 C A SBSPON 3'UTR 0.24 TCGA-FU-A3HY-01 8 89046527 89046527 C A MMP16 3'UTR 0.52 TCGA-FU-A3HY-01 9 101912675 101912675 C T TGFBR1 3'UTR 0.20 TCGA-FU-A3HY-01 9 102628320 102628320 C G NR4A3 3'UTR 0.19 TCGA-FU-A3HY-01 9 107289124 107289124 A G OR13C4 Missense_Mutation p.Y123H 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-FU-A3HY-01 9 116045409 116045409 C T PRPF4 Intron 0.30 TCGA-FU-A3HY-01 9 134400277 134400277 G C UCK1 3'UTR 0.27 TCGA-FU-A3HY-01 9 140086589 140086589 C T TPRN Missense_Mutation p.R704H 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-FU-A3HY-01 9 16418216 16418216 G C BNC2 3'UTR 0.23 TCGA-FU-A3HY-01 9 17273770 17273770 G C CNTLN Missense_Mutation p.E297Q 0.28 deleterious(0.05) probably_damaging(0.998) TCGA-FU-A3HY-01 9 26995626 26995626 C T LRRC19 Missense_Mutation p.E336K 0.12 deleterious(0.04) benign(0.04) TCGA-FU-A3HY-01 9 37780697 37780697 G C EXOSC3 Missense_Mutation p.F269L 0.21 tolerated(1) benign(0.047) TCGA-FU-A3HY-01 9 40774032 40774032 C T ZNF658 Missense_Mutation p.E415K 0.24 tolerated(0.71) benign(0.283) TCGA-FU-A3HY-01 9 74364976 74364976 G A TMEM2 Missense_Mutation p.S105L 0.13 deleterious(0) benign(0.115) TCGA-FU-A3HY-01 9 75533709 75533709 C T ALDH1A1 Silent p.G259G 0.08 TCGA-FU-A3HY-01 9 80031892 80031892 G C VPS13A 3'UTR 0.55 TCGA-FU-A3HY-01 9 99262762 99262762 C T CDC14B 3'UTR 0.12 TCGA-FU-A3HY-01 X 105905309 105905309 G A CXorf57 Silent p.E681E 0.08 TCGA-FU-A3HY-01 X 107084146 107084146 C G MID2 Missense_Mutation p.S84W 0.44 deleterious(0.01) probably_damaging(0.909) TCGA-FU-A3HY-01 X 114424925 114424925 C T RBMXL3 Silent p.Y307Y 0.16 TCGA-FU-A3HY-01 X 114880847 114880847 G A PLS3 Silent p.L501L 0.19 TCGA-FU-A3HY-01 X 119737988 119737988 C T MCTS1 5'Flank 0.45 TCGA-FU-A3HY-01 X 119738004 119738004 C T MCTS1 5'Flank 0.49 TCGA-FU-A3HY-01 X 129546420 129546420 C A RBMX2 Silent p.P189P 0.24 TCGA-FU-A3HY-01 X 129759154 129759154 C G ENOX2 3'UTR 0.33 TCGA-FU-A3HY-01 X 151869985 151869985 G A MAGEA6 Silent p.L225L 0.20 TCGA-FU-A3HY-01 X 48750899 48750899 G C TIMM17B 3'UTR 0.20 TCGA-FU-A3HY-01 X 48926458 48926458 C A CCDC120 3'UTR 0.18 TCGA-FU-A3HY-01 X 64709107 64709107 G T ZC3H12B Missense_Mutation p.L142F 0.28 deleterious(0) possibly_damaging(0.646) TCGA-FU-A3HY-01 X 70390335 70390335 G A NLGN3 3'Flank 0.29 TCGA-FU-A3HY-01 X 73063712 73063712 G A XIST RNA 0.18 TCGA-FU-A3HY-01 X 80370360 80370360 C T HMGN5 Missense_Mutation p.D213N 0.23 deleterious(0.02) unknown(0) TCGA-FU-A3HY-01 X 86890703 86890703 T A KLHL4 Missense_Mutation p.F618Y 0.12 tolerated(0.27) benign(0.012) TCGA-FU-A3HY-01 X 99551043 99551043 C T PCDH19 3'UTR 0.31 TCGA-FU-A3HZ-01 10 100995386 100995386 C A HPSE2 Missense_Mutation p.K58N 0.40 tolerated(0.1) benign(0.223) TCGA-FU-A3HZ-01 10 101611285 101611285 T G ABCC2 Missense_Mutation p.I1512S 0.55 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 10 102283514 102283514 T G NDUFB8 3'UTR 0.27 TCGA-FU-A3HZ-01 10 102296254 102296254 A C HIF1AN Silent p.G88G 0.27 TCGA-FU-A3HZ-01 10 102748733 102748733 C T C10orf2 Nonsense_Mutation p.R256* 0.14 TCGA-FU-A3HZ-01 10 102783339 102783339 C A PDZD7 Missense_Mutation p.K132N 0.45 deleterious(0) possibly_damaging(0.833) TCGA-FU-A3HZ-01 10 103557595 103557595 C G MGEA5 Intron 0.57 TCGA-FU-A3HZ-01 10 103920264 103920264 G T NOLC1 Missense_Mutation p.K385N 0.31 tolerated_low_confidence(0.1) benign(0.403) TCGA-FU-A3HZ-01 10 104018760 104018760 G A GBF1 Missense_Mutation p.R22Q 0.46 deleterious(0) probably_damaging(0.975) TCGA-FU-A3HZ-01 10 104184138 104184138 C T CUEDC2 Silent p.P98P 0.40 TCGA-FU-A3HZ-01 10 104491964 104491964 C T SFXN2 Missense_Mutation p.A237V 0.31 tolerated(0.3) probably_damaging(0.94) TCGA-FU-A3HZ-01 10 104861027 104861027 C A NT5C2 Missense_Mutation p.R149I 0.35 deleterious(0) possibly_damaging(0.776) TCGA-FU-A3HZ-01 10 105048397 105048397 G A INA Missense_Mutation p.E491K 0.47 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-FU-A3HZ-01 10 105049123 105049123 C A INA 3'UTR 0.35 TCGA-FU-A3HZ-01 10 105141587 105141587 A T TAF5 Missense_Mutation p.K508I 0.40 deleterious(0.01) possibly_damaging(0.557) TCGA-FU-A3HZ-01 10 105355533 105355533 C T SH3PXD2A 3'UTR 0.27 TCGA-FU-A3HZ-01 10 105762554 105762554 G T SLK Missense_Mutation p.D540Y 0.24 deleterious(0.01) benign(0.396) TCGA-FU-A3HZ-01 10 105768104 105768104 G A SLK Missense_Mutation p.R925Q 0.67 tolerated(0.06) benign(0.386) TCGA-FU-A3HZ-01 10 105882805 105882805 G A SFR1 Silent p.A32A 0.33 TCGA-FU-A3HZ-01 10 106907376 106907376 A C SORCS3 Missense_Mutation p.D435A 0.10 deleterious(0) probably_damaging(0.946) TCGA-FU-A3HZ-01 10 106974212 106974212 T C SORCS3 Silent p.I796I 0.34 TCGA-FU-A3HZ-01 10 111624807 111624807 T G XPNPEP1 3'UTR 0.53 TCGA-FU-A3HZ-01 10 11373650 11373650 T G CELF2 3'UTR 0.53 TCGA-FU-A3HZ-01 10 113928264 113928264 G A GPAM Nonsense_Mutation p.R305* 0.40 TCGA-FU-A3HZ-01 10 115343959 115343959 C T HABP2 Silent p.Y430Y 0.39 TCGA-FU-A3HZ-01 10 117228760 117228760 A C ATRNL1 Missense_Mutation p.E1192A 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-FU-A3HZ-01 10 118307944 118307944 C A PNLIP Missense_Mutation p.H92N 0.48 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 10 118354277 118354277 C T PNLIPRP1 Silent p.C122C 0.29 TCGA-FU-A3HZ-01 10 118423326 118423326 C A C10orf82 3'UTR 0.38 TCGA-FU-A3HZ-01 10 120354249 120354249 G A PRLHR Missense_Mutation p.R170C 0.29 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 10 120810137 120810137 C T EIF3A Missense_Mutation p.R790Q 0.31 deleterious(0.01) unknown(0) TCGA-FU-A3HZ-01 10 121295974 121295974 A G RGS10 Intron 0.29 TCGA-FU-A3HZ-01 10 124593209 124593209 G A CUZD1 Nonsense_Mutation p.R544* 0.29 TCGA-FU-A3HZ-01 10 1246192 1246192 A G ADARB2 Intron 0.38 TCGA-FU-A3HZ-01 10 124758126 124758127 - T IKZF5 Frame_Shift_Ins p.P6Tfs*29 0.33 TCGA-FU-A3HZ-01 10 124897036 124897036 C T HMX3 Missense_Mutation p.A288V 0.50 deleterious(0.03) probably_damaging(0.98) TCGA-FU-A3HZ-01 10 125426344 125426344 G A GPR26 Missense_Mutation p.A141T 0.32 deleterious(0.02) benign(0.438) TCGA-FU-A3HZ-01 10 12811675 12811675 G A CAMK1D Missense_Mutation p.E148K 0.50 deleterious(0.03) possibly_damaging(0.75) TCGA-FU-A3HZ-01 10 128788832 128788832 G T DOCK1 Missense_Mutation p.K146N 0.38 deleterious(0) possibly_damaging(0.635) TCGA-FU-A3HZ-01 10 129904435 129904435 A C MKI67 Missense_Mutation p.F1890C 0.37 tolerated(0.06) probably_damaging(0.91) TCGA-FU-A3HZ-01 10 129904779 129904779 C T MKI67 Silent p.T1775T 0.38 TCGA-FU-A3HZ-01 10 131646736 131646736 C A EBF3 Nonsense_Mutation p.E341* 0.31 TCGA-FU-A3HZ-01 10 134628206 134628206 G T TTC40 Missense_Mutation p.D2411E 0.16 deleterious(0) probably_damaging(0.994) TCGA-FU-A3HZ-01 10 134909191 134909191 C T GPR123 Intron 0.38 TCGA-FU-A3HZ-01 10 134916234 134916234 A G GPR123 Missense_Mutation p.T97A 0.40 tolerated(0.05) benign(0.204) TCGA-FU-A3HZ-01 10 135160856 135160856 T C PRAP1 5'UTR 0.34 TCGA-FU-A3HZ-01 10 135367772 135367772 G T SYCE1 3'Flank 0.41 TCGA-FU-A3HZ-01 10 13852888 13852888 C T FRMD4A Silent p.E44E 0.58 TCGA-FU-A3HZ-01 10 15115213 15115213 G A OLAH Silent p.S314S 0.47 TCGA-FU-A3HZ-01 10 15590565 15590565 A G ITGA8 Silent p.N923N 0.41 TCGA-FU-A3HZ-01 10 15760847 15760847 G T ITGA8 Silent p.I87I 0.40 TCGA-FU-A3HZ-01 10 16555726 16555726 C A PTER 3'UTR 0.11 TCGA-FU-A3HZ-01 10 16957842 16957842 C A CUBN Missense_Mutation p.E2396D 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-FU-A3HZ-01 10 17279479 17279479 C A VIM 3'UTR 0.38 TCGA-FU-A3HZ-01 10 18961608 18961608 G T ARL5B Nonsense_Mutation p.E105* 0.26 TCGA-FU-A3HZ-01 10 25140370 25140370 A C PRTFDC1 Missense_Mutation p.L193V 0.47 tolerated(0.41) benign(0.001) TCGA-FU-A3HZ-01 10 25883238 25883238 G T GPR158 Missense_Mutation p.R637I 0.52 deleterious(0.04) possibly_damaging(0.53) TCGA-FU-A3HZ-01 10 25887399 25887399 T G GPR158 Silent p.S948S 0.38 TCGA-FU-A3HZ-01 10 27012759 27012759 C A PDSS1 Missense_Mutation p.L212I 0.42 deleterious(0.02) possibly_damaging(0.901) TCGA-FU-A3HZ-01 10 27335392 27335392 C T ANKRD26 Silent p.S625S 0.32 TCGA-FU-A3HZ-01 10 27539436 27539436 G T RP11-85G18.6 RNA 0.22 TCGA-FU-A3HZ-01 10 28283975 28283975 C A ARMC4 Nonsense_Mutation p.E33* 0.31 TCGA-FU-A3HZ-01 10 29821086 29821086 C T SVIL Silent p.E618E 0.38 TCGA-FU-A3HZ-01 10 30654113 30654113 C T AL161651.1 5'Flank 0.37 TCGA-FU-A3HZ-01 10 30657359 30657359 C A AL161651.1 5'Flank 0.32 TCGA-FU-A3HZ-01 10 30986417 30986417 C T SVILP1 RNA 0.29 TCGA-FU-A3HZ-01 10 31810200 31810200 C A ZEB1 Missense_Mutation p.S647Y 0.40 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 10 34626313 34626313 C T PARD3 Missense_Mutation p.R820Q 0.43 deleterious(0.01) probably_damaging(0.986) TCGA-FU-A3HZ-01 10 42833396 42833396 T G RP11-313J2.1 RNA 0.42 TCGA-FU-A3HZ-01 10 45799286 45799286 G T OR13A1 Missense_Mutation p.F195L 0.33 deleterious(0.03) possibly_damaging(0.651) TCGA-FU-A3HZ-01 10 47701353 47701353 T C ANTXRL 3'UTR 0.64 TCGA-FU-A3HZ-01 10 48371809 48371809 G A ZNF488 3'UTR 0.38 TCGA-FU-A3HZ-01 10 49639254 49639254 T G MAPK8 Missense_Mutation p.V360G 0.26 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 10 50014048 50014048 G T WDFY4 Splice_Site p.X1549_splice 0.49 TCGA-FU-A3HZ-01 10 50531905 50531905 C T C10orf71 Missense_Mutation p.P439S 0.41 deleterious(0.02) possibly_damaging(0.604) TCGA-FU-A3HZ-01 10 50732662 50732662 C T ERCC6-PGBD3 Missense_Mutation p.E272K 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 10 5242299 5242299 C A AKR1C4 Missense_Mutation p.F80L 0.54 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 10 54054537 54054537 G A PRKG1 3'UTR 0.36 TCGA-FU-A3HZ-01 10 54076460 54076460 G T DKK1 Nonsense_Mutation p.E232* 0.54 TCGA-FU-A3HZ-01 10 55892704 55892704 G A PCDH15 Silent p.F616F 0.48 TCGA-FU-A3HZ-01 10 5768852 5768852 T G FAM208B Missense_Mutation p.I119S 0.19 deleterious(0) possibly_damaging(0.835) TCGA-FU-A3HZ-01 10 60129033 60129033 A C UBE2D1 3'UTR 0.36 TCGA-FU-A3HZ-01 10 61832013 61832013 G T ANK3 Missense_Mutation p.H2876N 0.38 benign(0.025) TCGA-FU-A3HZ-01 10 63845627 63845627 G T ARID5B Nonsense_Mutation p.E456* 0.36 TCGA-FU-A3HZ-01 10 63856044 63856044 C T ARID5B 3'UTR 0.33 TCGA-FU-A3HZ-01 10 64913609 64913609 A C NRBF2 Missense_Mutation p.K165N 0.21 deleterious(0) probably_damaging(0.982) TCGA-FU-A3HZ-01 10 64927785 64927785 A C JMJD1C 3'UTR 0.21 TCGA-FU-A3HZ-01 10 68687033 68687033 G T LRRTM3 Missense_Mutation p.R120I 0.40 deleterious(0) possibly_damaging(0.905) TCGA-FU-A3HZ-01 10 69748552 69748552 C A HERC4 Missense_Mutation p.K558N 0.52 deleterious(0.03) benign(0.007) TCGA-FU-A3HZ-01 10 70209937 70209937 C A DNA2 Nonsense_Mutation p.E349* 0.33 TCGA-FU-A3HZ-01 10 71158511 71158511 C T HK1 Missense_Mutation p.R850C 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-FU-A3HZ-01 10 71562411 71562411 G C COL13A1 Missense_Mutation p.E78Q 0.38 tolerated_low_confidence(0.22) probably_damaging(0.977) TCGA-FU-A3HZ-01 10 72182852 72182852 G T EIF4EBP2 3'UTR 0.29 TCGA-FU-A3HZ-01 10 73442211 73442211 T G CDH23 Missense_Mutation p.V215G 0.11 deleterious(0) probably_damaging(0.994) TCGA-FU-A3HZ-01 10 74767245 74767245 C A P4HA1 3'UTR 0.45 TCGA-FU-A3HZ-01 10 75406540 75406540 C T SYNPO2L Missense_Mutation p.R957Q 0.43 deleterious(0.01) benign(0.202) TCGA-FU-A3HZ-01 10 75553955 75553955 C T ZSWIM8 Silent p.I892I 0.37 TCGA-FU-A3HZ-01 10 75834615 75834615 G A VCL Missense_Mutation p.R246H 0.44 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 10 76791672 76791672 T G KAT6B 3'UTR 0.12 TCGA-FU-A3HZ-01 10 7798011 7798011 G T KIN 3'UTR 0.17 TCGA-FU-A3HZ-01 10 8116749 8116749 T G GATA3 3'UTR 0.25 TCGA-FU-A3HZ-01 10 87628911 87628911 A C GRID1 Missense_Mutation p.D269E 0.22 tolerated(1) benign(0.001) TCGA-FU-A3HZ-01 10 88769096 88769096 T C RP11-96C23.10 3'Flank 0.08 TCGA-FU-A3HZ-01 10 88911902 88911902 C A FAM35A Missense_Mutation p.P264H 0.34 tolerated(0.35) benign(0.17) TCGA-FU-A3HZ-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.50 deleterious(0.02) probably_damaging(0.989) TCGA-FU-A3HZ-01 10 89711931 89711931 G - PTEN Frame_Shift_Del p.N184Ifs*15 0.25 TCGA-FU-A3HZ-01 10 89720822 89720822 C T PTEN Missense_Mutation p.L325F 0.48 deleterious(0.01) possibly_damaging(0.895) TCGA-FU-A3HZ-01 10 90366573 90366573 C A LIPJ Missense_Mutation p.S337Y 0.19 deleterious(0) probably_damaging(0.947) TCGA-FU-A3HZ-01 10 91066926 91066926 T G IFIT2 Missense_Mutation p.S405A 0.57 deleterious(0.03) benign(0.338) TCGA-FU-A3HZ-01 10 91143778 91143778 A G IFIT1B Silent p.G236G 0.50 TCGA-FU-A3HZ-01 10 93021139 93021139 A C PCGF5 Missense_Mutation p.K177N 0.34 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 10 93040774 93040774 T G PCGF5 3'UTR 0.42 TCGA-FU-A3HZ-01 10 94234652 94234652 A C IDE Missense_Mutation p.L688V 0.45 tolerated(0.5) benign(0.009) TCGA-FU-A3HZ-01 10 94264579 94264579 G T IDE Missense_Mutation p.L468I 0.43 tolerated(0.08) probably_damaging(1) TCGA-FU-A3HZ-01 10 94835604 94835604 G A CYP26A1 Missense_Mutation p.E296K 0.50 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 10 95082920 95082920 G A MYOF Missense_Mutation p.R1791C 0.38 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 10 96006107 96006107 A G PLCE1 Missense_Mutation p.K942R 0.35 deleterious(0.03) probably_damaging(0.978) TCGA-FU-A3HZ-01 10 97820184 97820184 A C CCNJ 3'Flank 0.35 TCGA-FU-A3HZ-01 10 97917657 97917657 T C ZNF518A RNA 0.29 TCGA-FU-A3HZ-01 10 97956751 97956751 G T BLNK Missense_Mutation p.F388L 0.38 deleterious(0.05) probably_damaging(0.949) TCGA-FU-A3HZ-01 10 99080045 99080045 A C FRAT1 Missense_Mutation p.S279R 0.32 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-FU-A3HZ-01 10 99361706 99361706 G T HOGA1 Missense_Mutation p.A265S 0.12 deleterious(0.02) probably_damaging(1) TCGA-FU-A3HZ-01 11 100863000 100863000 C A TMEM133 5'UTR 0.33 TCGA-FU-A3HZ-01 11 100864259 100864259 C A TMEM133 3'UTR 0.33 TCGA-FU-A3HZ-01 11 100909965 100909965 A C PGR Missense_Mutation p.F895C 0.44 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 11 101323781 101323781 C A TRPC6 Nonsense_Mutation p.E901* 0.42 TCGA-FU-A3HZ-01 11 101342954 101342954 G T TRPC6 Missense_Mutation p.L707I 0.44 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 11 102220627 102220627 G A BIRC2 Silent p.S14S 0.29 TCGA-FU-A3HZ-01 11 102398628 102398628 G T MMP7 Missense_Mutation p.F65L 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-FU-A3HZ-01 11 102649479 102649479 T C MMP10 Silent p.E166E 0.17 TCGA-FU-A3HZ-01 11 102993571 102993571 G T DYNC2H1 Missense_Mutation p.K501N 0.13 possibly_damaging(0.726) TCGA-FU-A3HZ-01 11 10555624 10555624 G A RNF141 Nonsense_Mutation p.R28* 0.40 TCGA-FU-A3HZ-01 11 107463118 107463118 A C AP000889.3 Missense_Mutation p.N106H 0.34 tolerated_low_confidence(0.08) benign(0.146) TCGA-FU-A3HZ-01 11 107833413 107833413 T G RAB39A 3'UTR 0.24 TCGA-FU-A3HZ-01 11 10795559 10795559 C T CTR9 Missense_Mutation p.R910C 0.24 deleterious(0) possibly_damaging(0.876) TCGA-FU-A3HZ-01 11 108016992 108016992 A T ACAT1 Missense_Mutation p.S357C 0.17 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 11 108129735 108129735 C T ATM Missense_Mutation p.S800F 0.50 deleterious(0) probably_damaging(0.971) TCGA-FU-A3HZ-01 11 110124692 110124692 T G RDX Missense_Mutation p.K313T 0.11 deleterious(0) probably_damaging(0.961) TCGA-FU-A3HZ-01 11 110451001 110451001 G T ARHGAP20 Missense_Mutation p.S890Y 0.42 deleterious(0) probably_damaging(0.99) TCGA-FU-A3HZ-01 11 111152130 111152130 T G C11orf53 5'UTR 0.42 TCGA-FU-A3HZ-01 11 111179048 111179048 C T COLCA2 Silent p.L117L 0.33 TCGA-FU-A3HZ-01 11 111367925 111367925 A G BTG4 Intron 0.17 TCGA-FU-A3HZ-01 11 111916683 111916683 G T DLAT Nonsense_Mutation p.E463* 0.23 TCGA-FU-A3HZ-01 11 111943771 111943771 T G PIH1D2 Missense_Mutation p.Q43P 0.45 deleterious(0.01) benign(0.314) TCGA-FU-A3HZ-01 11 113147597 113147597 T G NCAM1 3'Flank 0.27 TCGA-FU-A3HZ-01 11 113604472 113604472 G A ZW10 Missense_Mutation p.R762C 0.35 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 11 113651087 113651087 A G CLDN25 Silent p.G190G 0.23 TCGA-FU-A3HZ-01 11 11374294 11374294 A C CSNK2A3 Missense_Mutation p.Y125D 0.14 deleterious(0) probably_damaging(0.977) TCGA-FU-A3HZ-01 11 114271244 114271244 T C RBM7 5'UTR 0.56 TCGA-FU-A3HZ-01 11 114278508 114278508 A C RBM7 Missense_Mutation p.K260N 0.31 deleterious(0) possibly_damaging(0.838) TCGA-FU-A3HZ-01 11 114393199 114393199 T C NXPE1 Missense_Mutation p.T237A 0.35 tolerated(0.37) benign(0.02) TCGA-FU-A3HZ-01 11 114393690 114393690 A C NXPE1 Missense_Mutation p.I198R 0.38 deleterious(0) possibly_damaging(0.691) TCGA-FU-A3HZ-01 11 117053326 117053326 A C SIDT2 Missense_Mutation p.Q203P 0.32 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 11 117076977 117076977 A C PCSK7 Silent p.V698V 0.09 TCGA-FU-A3HZ-01 11 118444410 118444410 C A ARCN1 Intron 0.36 TCGA-FU-A3HZ-01 11 118473592 118473592 T G ARCN1 3'UTR 0.34 TCGA-FU-A3HZ-01 11 118898959 118898959 A C SLC37A4 Missense_Mutation p.L109R 0.40 deleterious(0) probably_damaging(0.951) TCGA-FU-A3HZ-01 11 119020789 119020789 G T ABCG4 Missense_Mutation p.K38N 0.45 tolerated(0.13) benign(0.013) TCGA-FU-A3HZ-01 11 119207121 119207121 A C RNF26 Missense_Mutation p.N430T 0.17 deleterious(0) benign(0.377) TCGA-FU-A3HZ-01 11 119209810 119209810 G T C1QTNF5 3'UTR 0.54 TCGA-FU-A3HZ-01 11 120176482 120176482 C T POU2F3 Silent p.L255L 0.29 TCGA-FU-A3HZ-01 11 120327884 120327884 G A ARHGEF12 Missense_Mutation p.R705H 0.33 deleterious(0.02) possibly_damaging(0.72) TCGA-FU-A3HZ-01 11 120769288 120769288 C A GRIK4 Silent p.L404L 0.28 TCGA-FU-A3HZ-01 11 121179328 121179328 T G SC5D 3'UTR 0.33 TCGA-FU-A3HZ-01 11 122678796 122678796 C T UBASH3B Missense_Mutation p.A575V 0.37 deleterious(0) possibly_damaging(0.817) TCGA-FU-A3HZ-01 11 12281400 12281400 C A MICAL2 Missense_Mutation p.S1097Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-FU-A3HZ-01 11 122929020 122929020 C A HSPA8 Missense_Mutation p.E565D 0.45 tolerated_low_confidence(0.52) benign(0.014) TCGA-FU-A3HZ-01 11 123464850 123464850 C T GRAMD1B Missense_Mutation p.P106S 0.38 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 11 123676786 123676786 G T OR6M1 Missense_Mutation p.S91Y 0.41 deleterious(0) probably_damaging(0.98) TCGA-FU-A3HZ-01 11 123989239 123989239 G T VWA5A Splice_Site p.X157_splice 0.41 TCGA-FU-A3HZ-01 11 124121251 124121251 T G OR8G1 Intron 0.14 TCGA-FU-A3HZ-01 11 124500738 124500738 C T TBRG1 Nonsense_Mutation p.R312* 0.60 TCGA-FU-A3HZ-01 11 124793851 124793851 G A HEPACAM Silent p.S161S 0.44 TCGA-FU-A3HZ-01 11 1253309 1253309 G A MUC5B Missense_Mutation p.A588T 0.37 unknown(0) TCGA-FU-A3HZ-01 11 125359295 125359295 C A FEZ1 Intron 0.33 TCGA-FU-A3HZ-01 11 125447446 125447446 C T EI24 Missense_Mutation p.S99L 0.47 tolerated(0.65) benign(0.008) TCGA-FU-A3HZ-01 11 125850955 125850955 G T CDON Missense_Mutation p.H1089N 0.52 deleterious(0) possibly_damaging(0.873) TCGA-FU-A3HZ-01 11 1273616 1273616 C A MUC5B Missense_Mutation p.F4969L 0.44 unknown(0) TCGA-FU-A3HZ-01 11 128682062 128682062 C A FLI1 3'UTR 0.35 TCGA-FU-A3HZ-01 11 128936741 128936741 C A ARHGAP32 Missense_Mutation p.R171I 0.36 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 11 12963492 12963492 T C TEAD1 3'UTR 0.40 TCGA-FU-A3HZ-01 11 129980540 129980540 A C APLP2 Silent p.T129T 0.28 TCGA-FU-A3HZ-01 11 132285049 132285049 A C OPCML 3'UTR 0.75 TCGA-FU-A3HZ-01 11 13734524 13734524 T G FAR1 Missense_Mutation p.I300S 0.12 tolerated(0.07) benign(0.005) TCGA-FU-A3HZ-01 11 1459617 1459617 T G BRSK2 Missense_Mutation p.Y136D 0.19 tolerated(0.15) possibly_damaging(0.84) TCGA-FU-A3HZ-01 11 18057643 18057643 C A TPH1 Missense_Mutation p.R55I 0.36 deleterious(0.02) possibly_damaging(0.609) TCGA-FU-A3HZ-01 11 18303547 18303547 C A HPS5 Missense_Mutation p.E1093D 0.41 tolerated(0.26) possibly_damaging(0.61) TCGA-FU-A3HZ-01 11 18306950 18306950 T G HPS5 Missense_Mutation p.K965T 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-FU-A3HZ-01 11 18317559 18317559 C A HPS5 Missense_Mutation p.A541S 0.16 tolerated(0.1) probably_damaging(0.996) TCGA-FU-A3HZ-01 11 18327893 18327893 C A HPS5 Nonsense_Mutation p.E205* 0.22 TCGA-FU-A3HZ-01 11 18501956 18501956 A C TSG101 3'UTR 0.35 TCGA-FU-A3HZ-01 11 18750169 18750169 A C PTPN5 3'UTR 0.43 TCGA-FU-A3HZ-01 11 18751071 18751071 G T PTPN5 Silent p.I511I 0.42 TCGA-FU-A3HZ-01 11 20142813 20142813 A C NAV2 3'Flank 0.40 TCGA-FU-A3HZ-01 11 21592440 21592440 G A NELL1 Missense_Mutation p.R704Q 0.31 tolerated(0.43) benign(0.072) TCGA-FU-A3HZ-01 11 22294416 22294416 C T ANO5 Nonsense_Mutation p.R706* 0.41 TCGA-FU-A3HZ-01 11 22400149 22400149 T G SLC17A6 3'UTR 0.43 TCGA-FU-A3HZ-01 11 22646129 22646129 A C FANCF 3'UTR 0.30 TCGA-FU-A3HZ-01 11 24759791 24759791 G A LUZP2 Silent p.E92E 0.14 TCGA-FU-A3HZ-01 11 2979679 2979679 G A NAP1L4 Missense_Mutation p.T281M 0.25 deleterious(0.01) probably_damaging(0.937) TCGA-FU-A3HZ-01 11 30032823 30032823 C A KCNA4 Missense_Mutation p.G468V 0.36 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 11 30034018 30034018 C T KCNA4 Missense_Mutation p.A70T 0.45 tolerated_low_confidence(0.11) unknown(0) TCGA-FU-A3HZ-01 11 30516990 30516990 A G MPPED2 Missense_Mutation p.L130P 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-FU-A3HZ-01 11 3125479 3125479 C T OSBPL5 Silent p.P396P 0.45 TCGA-FU-A3HZ-01 11 32439182 32439182 C A WT1 Missense_Mutation p.M297I 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.554) TCGA-FU-A3HZ-01 11 32953621 32953621 C A QSER1 Missense_Mutation p.L144I 0.22 tolerated(0.06) probably_damaging(0.996) TCGA-FU-A3HZ-01 11 33631415 33631415 G A KIAA1549L Missense_Mutation p.E1431K 0.35 deleterious(0) probably_damaging(0.92) TCGA-FU-A3HZ-01 11 34999698 34999698 T G PDHX Missense_Mutation p.F331C 0.18 deleterious(0.03) possibly_damaging(0.798) TCGA-FU-A3HZ-01 11 35273715 35273715 T G SLC1A2 3'UTR 0.15 TCGA-FU-A3HZ-01 11 3661163 3661163 G A ART5 Missense_Mutation p.R166C 0.46 tolerated(0.05) benign(0.336) TCGA-FU-A3HZ-01 11 44074225 44074225 C T ACCSL Silent p.V262V 0.24 TCGA-FU-A3HZ-01 11 4615380 4615380 A C OR52I1 Missense_Mutation p.M38L 0.25 deleterious(0.03) benign(0.15) TCGA-FU-A3HZ-01 11 47256412 47256412 T G DDB2 Missense_Mutation p.I269M 0.29 tolerated(0.09) possibly_damaging(0.756) TCGA-FU-A3HZ-01 11 47799793 47799793 G T NUP160 3'UTR 0.36 TCGA-FU-A3HZ-01 11 48267500 48267500 G T OR4X2 Missense_Mutation p.R282I 0.44 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 11 48346655 48346655 G A OR4C3 Missense_Mutation p.V55I 0.32 tolerated(0.16) benign(0.004) TCGA-FU-A3HZ-01 11 4869575 4869575 G T OR51S1 Missense_Mutation p.F288L 0.13 tolerated(1) probably_damaging(0.996) TCGA-FU-A3HZ-01 11 4869592 4869592 G T OR51S1 Missense_Mutation p.L283I 0.13 tolerated(0.11) possibly_damaging(0.832) TCGA-FU-A3HZ-01 11 5153659 5153659 C A OR52A5 Missense_Mutation p.D72Y 0.29 deleterious(0) probably_damaging(0.98) TCGA-FU-A3HZ-01 11 5289695 5289695 G T HBE1 3'UTR 0.30 TCGA-FU-A3HZ-01 11 5462433 5462433 G T OR51I1 Missense_Mutation p.F104L 0.25 deleterious(0) probably_damaging(0.986) TCGA-FU-A3HZ-01 11 5475309 5475309 C A OR51I2 Silent p.I197I 0.06 TCGA-FU-A3HZ-01 11 55587477 55587477 C T OR5D18 Silent p.F124F 0.55 TCGA-FU-A3HZ-01 11 556271 556271 T G C11orf35 Missense_Mutation p.K393T 0.31 deleterious(0.01) possibly_damaging(0.76) TCGA-FU-A3HZ-01 11 56143423 56143423 G T OR8U1 Missense_Mutation p.M108I 0.35 tolerated(1) benign(0.016) TCGA-FU-A3HZ-01 11 56309909 56309909 G T OR5M11 Silent p.V275V 0.30 TCGA-FU-A3HZ-01 11 56310180 56310180 T G OR5M11 Missense_Mutation p.K185T 0.52 tolerated(0.28) possibly_damaging(0.497) TCGA-FU-A3HZ-01 11 57100475 57100475 G T SSRP1 Missense_Mutation p.F165L 0.52 tolerated(0.09) possibly_damaging(0.572) TCGA-FU-A3HZ-01 11 57313464 57313464 G A SMTNL1 Missense_Mutation p.G361E 0.29 deleterious(0) possibly_damaging(0.762) TCGA-FU-A3HZ-01 11 57511717 57511717 C A BTBD18 Missense_Mutation p.E676D 0.38 deleterious(0.04) benign(0.276) TCGA-FU-A3HZ-01 11 5775987 5775987 A C OR52N4 Missense_Mutation p.K6T 0.33 tolerated(0.7) benign(0.001) TCGA-FU-A3HZ-01 11 58391931 58391931 C A CNTF Missense_Mutation p.S180Y 0.27 deleterious(0) probably_damaging(0.975) TCGA-FU-A3HZ-01 11 58723127 58723127 C T GLYATL1 Missense_Mutation p.S210F 0.38 deleterious(0) benign(0.135) TCGA-FU-A3HZ-01 11 58962710 58962710 G T DTX4 Missense_Mutation p.K468N 0.23 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 11 5905772 5905772 C A OR52E4 Missense_Mutation p.L84I 0.21 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 11 59132047 59132047 C A OR5AN1 Missense_Mutation p.S39Y 0.25 deleterious(0) benign(0.212) TCGA-FU-A3HZ-01 11 59190288 59190288 T G OR5A2 Missense_Mutation p.I47L 0.10 tolerated(0.05) benign(0.126) TCGA-FU-A3HZ-01 11 59562924 59562924 A C STX3 Missense_Mutation p.K252T 0.56 deleterious(0) probably_damaging(0.952) TCGA-FU-A3HZ-01 11 6007367 6007367 A G OR52L1 Missense_Mutation p.V265A 0.26 tolerated(0.28) probably_damaging(0.958) TCGA-FU-A3HZ-01 11 60885650 60885650 T C CD5 Missense_Mutation p.F33S 0.11 tolerated(0.42) benign(0.28) TCGA-FU-A3HZ-01 11 60885682 60885682 T G CD5 Missense_Mutation p.C44G 0.09 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 11 61554220 61554220 C A MYRF 3'UTR 0.36 TCGA-FU-A3HZ-01 11 62289755 62289755 T C AHNAK Missense_Mutation p.D4045G 0.42 possibly_damaging(0.452) TCGA-FU-A3HZ-01 11 62343112 62343112 A C TUT1 Silent p.V731V 0.50 TCGA-FU-A3HZ-01 11 62766483 62766483 A C SLC22A8 Missense_Mutation p.I224S 0.29 deleterious(0) possibly_damaging(0.832) TCGA-FU-A3HZ-01 11 63342417 63342417 T G PLA2G16 Nonstop_Mutation p.*163Yext*20 0.42 TCGA-FU-A3HZ-01 11 63488091 63488091 T G RTN3 Missense_Mutation p.I706S 0.19 tolerated(0.05) benign(0.055) TCGA-FU-A3HZ-01 11 64124660 64124660 A G CCDC88B 3'UTR 0.40 TCGA-FU-A3HZ-01 11 6422892 6422892 T G APBB1 Missense_Mutation p.K470T 0.34 deleterious(0.01) benign(0.007) TCGA-FU-A3HZ-01 11 64536694 64536694 C A SF1 Splice_Site p.X385_splice 0.24 TCGA-FU-A3HZ-01 11 65659028 65659028 G A CCDC85B 3'UTR 0.39 TCGA-FU-A3HZ-01 11 65822783 65822783 G A SF3B2 Silent p.K165K 0.33 TCGA-FU-A3HZ-01 11 65977848 65977848 C A PACS1 Missense_Mutation p.L154I 0.47 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 11 66191114 66191114 G A NPAS4 Missense_Mutation p.A292T 0.47 tolerated(0.4) benign(0.003) TCGA-FU-A3HZ-01 11 6645079 6645079 T C DCHS1 Missense_Mutation p.T2610A 0.45 tolerated(1) benign(0.001) TCGA-FU-A3HZ-01 11 6651105 6651105 T C DCHS1 Silent p.Q1611Q 0.10 TCGA-FU-A3HZ-01 11 67250681 67250681 A C AIP Missense_Mutation p.I18L 0.33 tolerated(1) benign(0) TCGA-FU-A3HZ-01 11 6741666 6741666 A C GVINP1 RNA 0.40 TCGA-FU-A3HZ-01 11 68312376 68312376 G T PPP6R3 Nonsense_Mutation p.E100* 0.39 TCGA-FU-A3HZ-01 11 69962588 69962588 G A ANO1 Missense_Mutation p.E294K 0.33 tolerated(0.07) benign(0.094) TCGA-FU-A3HZ-01 11 70194459 70194459 G A PPFIA1 Missense_Mutation p.R699H 0.40 tolerated(0.66) benign(0.004) TCGA-FU-A3HZ-01 11 70229259 70229259 C A PPFIA1 3'UTR 0.58 TCGA-FU-A3HZ-01 11 70282282 70282282 T C CTTN Intron 0.30 TCGA-FU-A3HZ-01 11 72408650 72408650 G A ARAP1 Nonsense_Mutation p.R928* 0.18 TCGA-FU-A3HZ-01 11 74977311 74977311 C T ARRB1 Missense_Mutation p.D385N 0.42 tolerated(0.13) probably_damaging(0.975) TCGA-FU-A3HZ-01 11 75313924 75313924 T G MAP6 Intron 0.45 TCGA-FU-A3HZ-01 11 76415304 76415304 T G RP11-672A2.3 3'Flank 0.33 TCGA-FU-A3HZ-01 11 76814000 76814000 C T OMP Missense_Mutation p.R39C 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.817) TCGA-FU-A3HZ-01 11 76841652 76841652 T C MYO7A 5'UTR 0.40 TCGA-FU-A3HZ-01 11 7686582 7686582 A C CYB5R2 3'UTR 0.15 TCGA-FU-A3HZ-01 11 77884746 77884746 C T KCTD21 3'UTR 0.38 TCGA-FU-A3HZ-01 11 7949483 7949483 C T OR10A6 Missense_Mutation p.A243T 0.23 deleterious(0) benign(0.005) TCGA-FU-A3HZ-01 11 7982618 7982618 T C NLRP10 Missense_Mutation p.T181A 0.21 deleterious(0.04) benign(0.443) TCGA-FU-A3HZ-01 11 83874521 83874521 C A DLG2 Nonsense_Mutation p.E203* 0.25 TCGA-FU-A3HZ-01 11 84245767 84245767 C T DLG2 Missense_Mutation p.R122Q 0.38 deleterious_low_confidence(0.04) probably_damaging(0.964) TCGA-FU-A3HZ-01 11 8462277 8462277 C T STK33 Missense_Mutation p.D299N 0.37 deleterious(0.02) benign(0.418) TCGA-FU-A3HZ-01 11 85361308 85361308 T G TMEM126A Missense_Mutation p.N3K 0.38 deleterious(0.01) benign(0.02) TCGA-FU-A3HZ-01 11 85372260 85372260 T C CREBZF 3'UTR 0.48 TCGA-FU-A3HZ-01 11 85372882 85372882 A C CREBZF 3'UTR 0.33 TCGA-FU-A3HZ-01 11 85627172 85627172 G A CCDC83 Missense_Mutation p.E357K 0.39 tolerated(1) benign(0.002) TCGA-FU-A3HZ-01 11 86123534 86123534 A C CCDC81 Missense_Mutation p.N442H 0.67 deleterious(0.05) benign(0.005) TCGA-FU-A3HZ-01 11 88241884 88241884 G A GRM5 Missense_Mutation p.S1172L 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.766) TCGA-FU-A3HZ-01 11 899391 899391 A G CHID1 Missense_Mutation p.F211S 0.35 deleterious(0) probably_damaging(0.993) TCGA-FU-A3HZ-01 11 9005368 9005368 C T NRIP3 Intron 0.19 TCGA-FU-A3HZ-01 11 9047312 9047312 G T SCUBE2 Missense_Mutation p.Q874K 0.32 deleterious(0.03) possibly_damaging(0.842) TCGA-FU-A3HZ-01 11 9080863 9080863 C A SCUBE2 Missense_Mutation p.E359D 0.43 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 11 92539659 92539659 A C FAT3 Missense_Mutation p.E3075D 0.09 benign(0.004) TCGA-FU-A3HZ-01 11 93399888 93399888 C T KIAA1731 Silent p.V5V 0.21 TCGA-FU-A3HZ-01 11 93431732 93431732 G T KIAA1731 Missense_Mutation p.Q1218H 0.36 deleterious(0) probably_damaging(0.967) TCGA-FU-A3HZ-01 11 93529633 93529633 T G MED17 Missense_Mutation p.F357C 0.08 tolerated(0.07) benign(0.001) TCGA-FU-A3HZ-01 11 94129687 94129687 G A GPR83 Missense_Mutation p.R131C 0.12 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 12 101522379 101522379 A C ANO4 3'UTR 0.60 TCGA-FU-A3HZ-01 12 101551157 101551157 T G SLC5A8 Missense_Mutation p.K578T 0.38 tolerated(0.25) benign(0.097) TCGA-FU-A3HZ-01 12 101674919 101674919 G A UTP20 Missense_Mutation p.G24E 0.29 deleterious(0.01) possibly_damaging(0.48) TCGA-FU-A3HZ-01 12 101683923 101683924 - A UTP20 Frame_Shift_Ins p.N204Kfs*10 0.16 TCGA-FU-A3HZ-01 12 10194129 10194129 C A CLEC9A 5'UTR 0.50 TCGA-FU-A3HZ-01 12 102439876 102439876 G A CCDC53 Missense_Mutation p.R58C 0.26 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 12 102512330 102512330 T G NUP37 5'UTR 0.48 TCGA-FU-A3HZ-01 12 102559603 102559603 A G PARPBP Missense_Mutation p.N255D 0.25 tolerated(0.64) benign(0.009) TCGA-FU-A3HZ-01 12 102576370 102576370 C T PARPBP Missense_Mutation p.R410C 0.45 deleterious(0.04) benign(0.394) TCGA-FU-A3HZ-01 12 102590315 102590315 C A PARPBP 3'UTR 0.69 TCGA-FU-A3HZ-01 12 104151983 104151983 C T STAB2 Silent p.G2341G 0.39 TCGA-FU-A3HZ-01 12 104208767 104208767 A G NT5DC3 Missense_Mutation p.L114P 0.21 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 12 104381116 104381116 C A TDG 3'UTR 0.27 TCGA-FU-A3HZ-01 12 104397061 104397061 C A GLT8D2 Nonsense_Mutation p.E46* 0.22 TCGA-FU-A3HZ-01 12 105382013 105382013 C T C12orf45 Missense_Mutation p.R62W 0.45 tolerated(0.06) benign(0.086) TCGA-FU-A3HZ-01 12 105504914 105504914 G A KIAA1033 Missense_Mutation p.E25K 0.23 deleterious(0.01) benign(0.012) TCGA-FU-A3HZ-01 12 105538215 105538215 C T KIAA1033 Missense_Mutation p.R721C 0.29 deleterious(0.01) possibly_damaging(0.784) TCGA-FU-A3HZ-01 12 106830853 106830853 G T POLR3B Missense_Mutation p.K600N 0.52 tolerated(0.09) benign(0.008) TCGA-FU-A3HZ-01 12 10762486 10762486 C A MAGOHB Nonsense_Mutation p.E70* 0.40 TCGA-FU-A3HZ-01 12 109294343 109294343 G T DAO 3'UTR 0.47 TCGA-FU-A3HZ-01 12 110032988 110032988 T C MVK Splice_Site p.X347_splice 0.26 TCGA-FU-A3HZ-01 12 111471956 111471956 G T CUX2 5'UTR 0.31 TCGA-FU-A3HZ-01 12 113325694 113325694 A C RPH3A Missense_Mutation p.K510T 0.32 deleterious(0.02) possibly_damaging(0.635) TCGA-FU-A3HZ-01 12 11420539 11420539 G A PRB3 Intron 0.16 TCGA-FU-A3HZ-01 12 114793616 114793616 G T TBX5 Missense_Mutation p.F426L 0.40 deleterious(0.01) possibly_damaging(0.504) TCGA-FU-A3HZ-01 12 117710211 117710211 G A NOS1 Silent p.N606N 0.37 TCGA-FU-A3HZ-01 12 118467597 118467597 G A RFC5 Missense_Mutation p.R298Q 0.36 tolerated(0.07) benign(0.229) TCGA-FU-A3HZ-01 12 119960741 119960741 C A CCDC60 Intron 0.57 TCGA-FU-A3HZ-01 12 120142196 120142196 T G CIT Missense_Mutation p.E1759A 0.37 tolerated(0.12) benign(0.061) TCGA-FU-A3HZ-01 12 120649995 120649995 C T PXN 3'UTR 0.15 TCGA-FU-A3HZ-01 12 120894916 120894916 A G GATC Missense_Mutation p.N98D 0.40 tolerated(0.18) benign(0.094) TCGA-FU-A3HZ-01 12 122756179 122756179 A C CLIP1 3'Flank 0.28 TCGA-FU-A3HZ-01 12 122825413 122825413 G A CLIP1 Missense_Mutation p.R780W 0.39 tolerated(0.09) possibly_damaging(0.591) TCGA-FU-A3HZ-01 12 122967242 122967242 C A ZCCHC8 Missense_Mutation p.R224S 0.43 deleterious(0) probably_damaging(0.972) TCGA-FU-A3HZ-01 12 123057714 123057714 G A KNTC1 Missense_Mutation p.R722Q 0.33 deleterious(0.03) probably_damaging(0.968) TCGA-FU-A3HZ-01 12 123062327 123062327 C A KNTC1 Missense_Mutation p.H944N 0.44 tolerated(0.88) benign(0) TCGA-FU-A3HZ-01 12 12311880 12311880 C A LRP6 Nonsense_Mutation p.E892* 0.41 TCGA-FU-A3HZ-01 12 123265839 123265839 A C CCDC62 Missense_Mutation p.K120Q 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A3HZ-01 12 12339926 12339926 G A LRP6 Missense_Mutation p.R259C 0.09 deleterious(0) benign(0.27) TCGA-FU-A3HZ-01 12 123706423 123706423 T A MPHOSPH9 5'UTR 0.44 TCGA-FU-A3HZ-01 12 123829879 123829879 T G SBNO1 Missense_Mutation p.K159T 0.21 deleterious_low_confidence(0.01) benign(0.142) TCGA-FU-A3HZ-01 12 124132555 124132555 C T GTF2H3 Silent p.F82F 0.24 TCGA-FU-A3HZ-01 12 124382351 124382351 A G DNAH10 Silent p.E2987E 0.22 TCGA-FU-A3HZ-01 12 124812015 124812015 G A NCOR2 Missense_Mutation p.P2375S 0.09 probably_damaging(1) TCGA-FU-A3HZ-01 12 129373190 129373190 G A GLT1D1 Missense_Mutation p.R75Q 0.25 tolerated(0.54) benign(0) TCGA-FU-A3HZ-01 12 129558758 129558758 T G TMEM132D Missense_Mutation p.I988L 0.34 tolerated(0.13) benign(0.038) TCGA-FU-A3HZ-01 12 13095230 13095230 C T GPRC5D Missense_Mutation p.A310T 0.32 tolerated(0.57) benign(0.074) TCGA-FU-A3HZ-01 12 13233558 13233558 G T KIAA1467 Splice_Site p.X622_splice 0.47 TCGA-FU-A3HZ-01 12 132466942 132466942 G A EP400 Silent p.S616S 0.29 TCGA-FU-A3HZ-01 12 133215718 133215718 A C POLE Missense_Mutation p.F1849V 0.30 deleterious(0) possibly_damaging(0.838) TCGA-FU-A3HZ-01 12 133253151 133253151 G A POLE Missense_Mutation p.S297F 0.53 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 12 133372579 133372579 G T GOLGA3 Silent p.I776I 0.44 TCGA-FU-A3HZ-01 12 133795460 133795460 C A ANHX 3'UTR 0.47 TCGA-FU-A3HZ-01 12 13526193 13526193 T G C12orf36 Missense_Mutation p.K121T 0.44 possibly_damaging(0.607) TCGA-FU-A3HZ-01 12 14929067 14929067 C A H2AFJ 3'UTR 0.41 TCGA-FU-A3HZ-01 12 14996144 14996144 G A ART4 5'UTR 0.14 TCGA-FU-A3HZ-01 12 15370477 15370477 C A RERG 5'UTR 0.36 TCGA-FU-A3HZ-01 12 15370554 15370554 T G RERG Intron 0.32 TCGA-FU-A3HZ-01 12 15718545 15718545 G T PTPRO Missense_Mutation p.K910N 0.21 deleterious(0) probably_damaging(0.96) TCGA-FU-A3HZ-01 12 1740590 1740590 A G WNT5B Missense_Mutation p.N24D 0.12 tolerated(0.13) benign(0.014) TCGA-FU-A3HZ-01 12 18435082 18435082 G T PIK3C2G Nonsense_Mutation p.E23* 0.58 TCGA-FU-A3HZ-01 12 18576946 18576946 G A PIK3C2G Missense_Mutation p.S785N 0.33 tolerated(0.42) possibly_damaging(0.669) TCGA-FU-A3HZ-01 12 18854471 18854471 T G PLCZ1 Missense_Mutation p.K327N 0.58 tolerated(0.2) benign(0.013) TCGA-FU-A3HZ-01 12 19506935 19506935 C T PLEKHA5 Missense_Mutation p.T1046M 0.27 tolerated(0.17) benign(0.018) TCGA-FU-A3HZ-01 12 19671973 19671973 C A AEBP2 3'UTR 0.12 TCGA-FU-A3HZ-01 12 20799820 20799820 C A PDE3A Missense_Mutation p.A834D 0.33 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 12 21028281 21028281 G A SLCO1B3 Silent p.P280P 0.38 TCGA-FU-A3HZ-01 12 21168708 21168708 G A SLCO1B7 Missense_Mutation p.E27K 0.25 deleterious(0) probably_damaging(0.993) TCGA-FU-A3HZ-01 12 21643286 21643286 C A RECQL Missense_Mutation p.D81Y 0.37 deleterious(0.02) benign(0.035) TCGA-FU-A3HZ-01 12 21684079 21684079 A C C12orf39 Missense_Mutation p.K101Q 0.56 deleterious(0.04) benign(0.037) TCGA-FU-A3HZ-01 12 21918617 21918617 T C KCNJ8 3'UTR 0.15 TCGA-FU-A3HZ-01 12 22677465 22677465 C T C2CD5 Missense_Mutation p.R181Q 0.46 deleterious(0.01) benign(0.17) TCGA-FU-A3HZ-01 12 25359336 25359336 T G KRAS 3'Flank 0.67 TCGA-FU-A3HZ-01 12 2614095 2614095 C A CACNA1C Missense_Mutation p.L401I 0.35 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 12 27127096 27127096 T G TM7SF3 Missense_Mutation p.R505S 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-FU-A3HZ-01 12 28702986 28702986 C A CCDC91 3'UTR 0.45 TCGA-FU-A3HZ-01 12 31815034 31815034 T C METTL20 Silent p.A49A 0.50 TCGA-FU-A3HZ-01 12 32137827 32137827 C A KIAA1551 Missense_Mutation p.S1313Y 0.43 tolerated(0.61) benign(0.033) TCGA-FU-A3HZ-01 12 333602 333602 A C SLC6A13 Missense_Mutation p.F380V 0.42 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 12 34180241 34180241 T G ALG10 3'UTR 0.30 TCGA-FU-A3HZ-01 12 368867 368867 C T SLC6A13 Intron 0.36 TCGA-FU-A3HZ-01 12 3939163 3939163 C A PARP11 Nonsense_Mutation p.E14* 0.49 TCGA-FU-A3HZ-01 12 40422238 40422238 G A SLC2A13 Nonsense_Mutation p.R264* 0.20 TCGA-FU-A3HZ-01 12 40925803 40925803 G A MUC19 Intron 0.35 TCGA-FU-A3HZ-01 12 43771257 43771257 C A ADAMTS20 Nonsense_Mutation p.E1636* 0.26 TCGA-FU-A3HZ-01 12 44149058 44149058 A G PUS7L 5'UTR 0.50 TCGA-FU-A3HZ-01 12 45000955 45000955 T A NELL2 Missense_Mutation p.T604S 0.47 tolerated(0.24) benign(0.006) TCGA-FU-A3HZ-01 12 45269372 45269372 T G NELL2 Intron 0.11 TCGA-FU-A3HZ-01 12 4627253 4627253 C T C12orf4 Missense_Mutation p.R335Q 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-FU-A3HZ-01 12 46582320 46582320 T G SLC38A1 3'UTR 0.20 TCGA-FU-A3HZ-01 12 46600991 46600991 T G SLC38A1 Missense_Mutation p.K170N 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-FU-A3HZ-01 12 4736535 4736535 C A AKAP3 Missense_Mutation p.E511D 0.30 deleterious(0.03) probably_damaging(0.952) TCGA-FU-A3HZ-01 12 47629064 47629064 G A PCED1B Missense_Mutation p.G73D 0.21 deleterious(0.03) probably_damaging(0.989) TCGA-FU-A3HZ-01 12 48369798 48369798 C T COL2A1 Missense_Mutation p.G1182D 0.55 unknown(0) TCGA-FU-A3HZ-01 12 49075215 49075215 C A KANSL2 Missense_Mutation p.K67N 0.31 tolerated(0.09) benign(0.132) TCGA-FU-A3HZ-01 12 4919526 4919526 C T KCNA6 Missense_Mutation p.R107W 0.10 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 12 4921010 4921010 A C KCNA6 3'UTR 0.32 TCGA-FU-A3HZ-01 12 4921126 4921126 A G KCNA6 3'UTR 0.32 TCGA-FU-A3HZ-01 12 4921554 4921554 T C KCNA6 3'UTR 0.50 TCGA-FU-A3HZ-01 12 4922302 4922302 A T KCNA6 3'UTR 0.41 TCGA-FU-A3HZ-01 12 49447074 49447074 A C KMT2D Silent p.V290V 0.41 TCGA-FU-A3HZ-01 12 49491271 49491271 A C LMBR1L 3'UTR 0.47 TCGA-FU-A3HZ-01 12 50025316 50025316 C T PRPF40B Missense_Mutation p.P73S 0.12 tolerated(0.13) unknown(0) TCGA-FU-A3HZ-01 12 50029253 50029253 G T PRPF40B Missense_Mutation p.E424D 0.46 deleterious(0.02) probably_damaging(0.995) TCGA-FU-A3HZ-01 12 5025528 5025528 T G KCNA1 3'UTR 0.24 TCGA-FU-A3HZ-01 12 5026291 5026291 G T KCNA1 3'UTR 0.50 TCGA-FU-A3HZ-01 12 50264256 50264256 C A FAIM2 3'UTR 0.42 TCGA-FU-A3HZ-01 12 5027214 5027214 G T KCNA1 3'UTR 0.22 TCGA-FU-A3HZ-01 12 50348075 50348075 C A AQP2 Missense_Mutation p.F166L 0.10 tolerated(1) benign(0.002) TCGA-FU-A3HZ-01 12 50475644 50475644 G T ASIC1 3'UTR 0.43 TCGA-FU-A3HZ-01 12 50869372 50869372 C A LARP4 Missense_Mutation p.L634I 0.40 tolerated(0.15) benign(0.171) TCGA-FU-A3HZ-01 12 51512478 51512478 A C TFCP2 Missense_Mutation p.F67C 0.14 deleterious(0) probably_damaging(0.964) TCGA-FU-A3HZ-01 12 5153773 5153773 C T KCNA5 Missense_Mutation p.R154C 0.50 deleterious(0) probably_damaging(0.943) TCGA-FU-A3HZ-01 12 51636584 51636584 A C DAZAP2 3'UTR 0.23 TCGA-FU-A3HZ-01 12 52159834 52159834 T G SCN8A Intron 0.50 TCGA-FU-A3HZ-01 12 52200522 52200522 T G SCN8A Missense_Mutation p.I1751S 0.45 deleterious(0) probably_damaging(0.925) TCGA-FU-A3HZ-01 12 52881496 52881496 G T KRT6A 3'UTR 0.45 TCGA-FU-A3HZ-01 12 53070101 53070101 T C KRT1 Missense_Mutation p.E478G 0.42 deleterious(0) probably_damaging(0.964) TCGA-FU-A3HZ-01 12 53581927 53581927 T A ZNF740 3'UTR 0.30 TCGA-FU-A3HZ-01 12 53691642 53691642 C T PFDN5 Silent p.V72V 0.42 TCGA-FU-A3HZ-01 12 54403003 54403003 C T HOXC8 5'UTR 0.33 TCGA-FU-A3HZ-01 12 54406427 54406427 T G HOXC8 3'UTR 0.55 TCGA-FU-A3HZ-01 12 55759219 55759219 G T OR6C75 Nonsense_Mutation p.E109* 0.32 TCGA-FU-A3HZ-01 12 56119986 56119986 C A CD63 Missense_Mutation p.K162N 0.21 tolerated(0.16) benign(0.002) TCGA-FU-A3HZ-01 12 56665682 56665682 G T CS 3'UTR 0.42 TCGA-FU-A3HZ-01 12 57005692 57005692 T C BAZ2A Missense_Mutation p.K494E 0.29 tolerated(0.15) benign(0.075) TCGA-FU-A3HZ-01 12 57394269 57394269 C T ZBTB39 3'UTR 0.42 TCGA-FU-A3HZ-01 12 57430602 57430602 A C MYO1A Missense_Mutation p.I743R 0.11 tolerated(0.31) benign(0.14) TCGA-FU-A3HZ-01 12 57436875 57436875 C T MYO1A Missense_Mutation p.R360Q 0.15 deleterious(0) probably_damaging(0.937) TCGA-FU-A3HZ-01 12 58179958 58179958 C T TSFM Missense_Mutation p.L82F 0.31 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 12 6138539 6138539 C A VWF Missense_Mutation p.S979I 0.26 tolerated(0.31) possibly_damaging(0.881) TCGA-FU-A3HZ-01 12 62784715 62784715 T G USP15 Missense_Mutation p.I639S 0.32 tolerated(0.78) benign(0.045) TCGA-FU-A3HZ-01 12 62798351 62798351 T G USP15 3'UTR 0.27 TCGA-FU-A3HZ-01 12 62860941 62860941 A C MON2 5'UTR 0.28 TCGA-FU-A3HZ-01 12 64061950 64061950 T G DPY19L2 Missense_Mutation p.K75T 0.27 tolerated_low_confidence(0.17) benign(0.055) TCGA-FU-A3HZ-01 12 6442296 6442301 TGTTCT AA TNFRSF1A Frame_Shift_Del p.Q162Lfs*12 0.31 TCGA-FU-A3HZ-01 12 64609553 64609553 G T C12orf66 Missense_Mutation p.F142L 0.43 tolerated(0.36) benign(0.128) TCGA-FU-A3HZ-01 12 64842063 64842063 A C XPOT 3'UTR 0.21 TCGA-FU-A3HZ-01 12 65272397 65272397 G T TBC1D30 3'Flank 0.31 TCGA-FU-A3HZ-01 12 65444524 65444524 C A WIF1 3'UTR 0.50 TCGA-FU-A3HZ-01 12 667745 667745 G C B4GALNT3 Silent p.R893R 0.38 TCGA-FU-A3HZ-01 12 66856842 66856842 G C GRIP1 Missense_Mutation p.L302V 0.36 deleterious(0) probably_damaging(0.92) TCGA-FU-A3HZ-01 12 67698430 67698430 A C CAND1 Missense_Mutation p.S447R 0.23 deleterious(0) probably_damaging(0.927) TCGA-FU-A3HZ-01 12 69210688 69210688 T G MDM2 Missense_Mutation p.L91V 0.31 tolerated(0.65) probably_damaging(0.971) TCGA-FU-A3HZ-01 12 72003638 72003638 A C ZFC3H1 3'UTR 0.46 TCGA-FU-A3HZ-01 12 75601247 75601247 C T KCNC2 Missense_Mutation p.D173N 0.38 deleterious(0.03) benign(0.349) TCGA-FU-A3HZ-01 12 7636142 7636142 A C CD163 Missense_Mutation p.L970R 0.10 deleterious(0) probably_damaging(0.971) TCGA-FU-A3HZ-01 12 76740306 76740306 A C BBS10 Missense_Mutation p.L487V 0.29 tolerated(0.11) possibly_damaging(0.773) TCGA-FU-A3HZ-01 12 76740961 76740961 A C BBS10 Missense_Mutation p.F268L 0.36 tolerated(1) benign(0.01) TCGA-FU-A3HZ-01 12 77235776 77235776 T G ZDHHC17 Missense_Mutation p.F386V 0.15 tolerated(0.5) benign(0.007) TCGA-FU-A3HZ-01 12 78444581 78444581 G T NAV3 Nonsense_Mutation p.E724* 0.38 TCGA-FU-A3HZ-01 12 78513180 78513180 G T NAV3 Missense_Mutation p.K1068N 0.42 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 12 78513345 78513345 T G NAV3 Silent p.V1123V 0.28 TCGA-FU-A3HZ-01 12 78606636 78606636 C T NAV3 3'Flank 0.34 TCGA-FU-A3HZ-01 12 7947426 7947426 A G NANOG Missense_Mutation p.N218S 0.29 tolerated(0.28) benign(0.014) TCGA-FU-A3HZ-01 12 79844630 79844630 T G SYT1 3'UTR 0.16 TCGA-FU-A3HZ-01 12 80613628 80613628 C T OTOGL Silent p.F81F 0.25 TCGA-FU-A3HZ-01 12 80658837 80658837 A C OTOGL Missense_Mutation p.I682L 0.48 tolerated(0.47) benign(0.007) TCGA-FU-A3HZ-01 12 80764416 80764416 A C OTOGL Missense_Mutation p.I2219L 0.11 tolerated(1) benign(0.037) TCGA-FU-A3HZ-01 12 80838173 80838173 G T PTPRQ Missense_Mutation p.E16D 0.44 tolerated(0.11) benign(0.017) TCGA-FU-A3HZ-01 12 81025978 81025978 A C PTPRQ Silent p.G1894G 0.27 TCGA-FU-A3HZ-01 12 81101643 81101643 C T MYF6 Missense_Mutation p.P49S 0.31 tolerated(0.17) benign(0.202) TCGA-FU-A3HZ-01 12 81747087 81747087 C A PPFIA2 Missense_Mutation p.R602I 0.42 deleterious(0.01) benign(0.077) TCGA-FU-A3HZ-01 12 8192701 8192701 G T FOXJ2 Missense_Mutation p.E91D 0.49 deleterious(0) probably_damaging(0.968) TCGA-FU-A3HZ-01 12 8330944 8330944 C A ZNF705A 3'UTR 0.34 TCGA-FU-A3HZ-01 12 83526008 83526008 A C TMTC2 Missense_Mutation p.N784T 0.36 deleterious(0) probably_damaging(0.994) TCGA-FU-A3HZ-01 12 85411359 85411359 T C TSPAN19 Missense_Mutation p.H157R 0.42 tolerated(0.15) benign(0.084) TCGA-FU-A3HZ-01 12 88374035 88374035 T G C12orf50 3'UTR 0.47 TCGA-FU-A3HZ-01 12 88534775 88534775 T G CEP290 Missense_Mutation p.E46D 0.46 benign(0.021) TCGA-FU-A3HZ-01 12 89982400 89982400 G T ATP2B1 3'UTR 0.53 TCGA-FU-A3HZ-01 12 90005126 90005126 A C ATP2B1 Missense_Mutation p.C697W 0.43 deleterious(0) probably_damaging(0.941) TCGA-FU-A3HZ-01 12 9089552 9089552 C T PHC1 Silent p.C823C 0.53 TCGA-FU-A3HZ-01 12 91366698 91366698 C A EPYC Nonsense_Mutation p.E134* 0.25 TCGA-FU-A3HZ-01 12 91449677 91449677 G T KERA Missense_Mutation p.L128M 0.40 tolerated(0.77) possibly_damaging(0.896) TCGA-FU-A3HZ-01 12 94699043 94699043 G T PLXNC1 Missense_Mutation p.K1563N 0.41 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 12 94965289 94965289 G A TMCC3 Silent p.A452A 0.34 TCGA-FU-A3HZ-01 12 95475116 95475116 A C FGD6 3'UTR 0.33 TCGA-FU-A3HZ-01 12 96300199 96300199 A C CCDC38 Missense_Mutation p.F112C 0.60 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 12 96361721 96361721 A C AMDHD1 3'UTR 0.33 TCGA-FU-A3HZ-01 12 96676323 96676323 G A CDK17 Nonsense_Mutation p.R474* 0.47 TCGA-FU-A3HZ-01 12 97102431 97102431 A G C12orf55 Missense_Mutation p.T2192A 0.24 tolerated(0.36) benign(0.086) TCGA-FU-A3HZ-01 12 97112265 97112265 A C C12orf55 Missense_Mutation p.K2257Q 0.19 tolerated(0.06) benign(0.002) TCGA-FU-A3HZ-01 12 98938791 98938791 C A TMPO Missense_Mutation p.F274L 0.32 tolerated(0.56) benign(0.029) TCGA-FU-A3HZ-01 12 99166925 99166925 G T ANKS1B Silent p.I1133I 0.48 TCGA-FU-A3HZ-01 13 100615591 100615591 C A ZIC5 3'UTR 0.35 TCGA-FU-A3HZ-01 13 100637349 100637349 C T ZIC2 Missense_Mutation p.R409W 0.48 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 13 103385004 103385004 C A CCDC168 Missense_Mutation p.A1386S 0.29 tolerated(0.06) unknown(0) TCGA-FU-A3HZ-01 13 103386961 103386961 T A CCDC168 Missense_Mutation p.Q733H 0.21 deleterious(0) benign(0.387) TCGA-FU-A3HZ-01 13 103387185 103387185 C T CCDC168 Missense_Mutation p.E659K 0.33 deleterious(0.03) possibly_damaging(0.486) TCGA-FU-A3HZ-01 13 103515335 103515335 G T BIVM-ERCC5 Missense_Mutation p.E1038D 0.53 tolerated_low_confidence(0.16) benign(0.002) TCGA-FU-A3HZ-01 13 106142333 106142333 G A DAOA Missense_Mutation p.R122H 0.18 tolerated_low_confidence(0.56) possibly_damaging(0.715) TCGA-FU-A3HZ-01 13 107143376 107143376 A C EFNB2 3'UTR 0.18 TCGA-FU-A3HZ-01 13 107822431 107822431 G T FAM155A 3'UTR 0.54 TCGA-FU-A3HZ-01 13 110804685 110804685 A G COL4A1 Missense_Mutation p.F1642L 0.10 unknown(0) TCGA-FU-A3HZ-01 13 111155804 111155804 C T COL4A2 Missense_Mutation p.P1372S 0.50 possibly_damaging(0.876) TCGA-FU-A3HZ-01 13 113536242 113536242 C T ATP11A 3'UTR 0.30 TCGA-FU-A3HZ-01 13 114134923 114134923 C A DCUN1D2 Missense_Mutation p.R119I 0.29 deleterious(0) benign(0.216) TCGA-FU-A3HZ-01 13 114290892 114290892 G T TFDP1 Missense_Mutation p.D295Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 13 114292057 114292057 T C TFDP1 Intron 0.33 TCGA-FU-A3HZ-01 13 114751116 114751116 T C RASA3 Missense_Mutation p.D800G 0.33 tolerated(0.41) probably_damaging(0.995) TCGA-FU-A3HZ-01 13 115011474 115011474 G T CDC16 Splice_Site p.X283_splice 0.33 TCGA-FU-A3HZ-01 13 19747927 19747927 A G TUBA3C 3'UTR 0.30 TCGA-FU-A3HZ-01 13 20077392 20077392 C T TPTE2 5'UTR 0.45 TCGA-FU-A3HZ-01 13 21987845 21987845 T G ZDHHC20 Missense_Mutation p.I106L 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-FU-A3HZ-01 13 25075835 25075835 C A PARP4 Missense_Mutation p.K90N 0.09 tolerated(0.34) benign(0.01) TCGA-FU-A3HZ-01 13 25160920 25160920 A C RP11-556N21.1 RNA 0.33 TCGA-FU-A3HZ-01 13 25283926 25283926 A G ATP12A Missense_Mutation p.D914G 0.17 tolerated(0.14) benign(0.001) TCGA-FU-A3HZ-01 13 25398490 25398490 T G RNF17 Intron 0.43 TCGA-FU-A3HZ-01 13 25822865 25822865 G T MTMR6 3'UTR 0.48 TCGA-FU-A3HZ-01 13 25916531 25916531 A C NUPL1 3'UTR 0.31 TCGA-FU-A3HZ-01 13 26786925 26786925 T G RNF6 3'UTR 0.29 TCGA-FU-A3HZ-01 13 26789310 26789310 T G RNF6 Missense_Mutation p.N237H 0.38 deleterious(0) possibly_damaging(0.498) TCGA-FU-A3HZ-01 13 27649460 27649460 T A USP12 Missense_Mutation p.Q267L 0.44 deleterious(0.02) possibly_damaging(0.602) TCGA-FU-A3HZ-01 13 28854578 28854578 G A PAN3 Missense_Mutation p.R740Q 0.44 deleterious(0.03) possibly_damaging(0.886) TCGA-FU-A3HZ-01 13 29287142 29287142 A C SLC46A3 Silent p.T245T 0.50 TCGA-FU-A3HZ-01 13 29292084 29292084 T C SLC46A3 Missense_Mutation p.T18A 0.54 tolerated(0.41) benign(0.007) TCGA-FU-A3HZ-01 13 30059412 30059412 C A MTUS2 Intron 0.57 TCGA-FU-A3HZ-01 13 30106996 30106996 T G SLC7A1 Missense_Mutation p.D165A 0.11 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 13 30110018 30110018 A G SLC7A1 Missense_Mutation p.V103A 0.53 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 13 30340505 30340505 A G UBL3 3'UTR 0.36 TCGA-FU-A3HZ-01 13 32910943 32910943 G T BRCA2 Missense_Mutation p.K817N 0.17 tolerated(0.13) benign(0.022) TCGA-FU-A3HZ-01 13 33628404 33628404 A C KL Missense_Mutation p.E440D 0.40 tolerated(0.16) benign(0.267) TCGA-FU-A3HZ-01 13 36776105 36776105 C T SOHLH2 Silent p.A135A 0.46 TCGA-FU-A3HZ-01 13 37007341 37007341 A T CCNA1 Missense_Mutation p.R94W 0.42 deleterious(0.01) possibly_damaging(0.711) TCGA-FU-A3HZ-01 13 37271714 37271714 G T SERTM1 3'UTR 0.54 TCGA-FU-A3HZ-01 13 38171338 38171338 G T POSTN Silent p.S67S 0.25 TCGA-FU-A3HZ-01 13 39264464 39264464 T G FREM2 Missense_Mutation p.L995V 0.62 deleterious(0.05) benign(0.186) TCGA-FU-A3HZ-01 13 39613372 39613372 A C NHLRC3 Missense_Mutation p.T62P 0.14 tolerated(0.33) benign(0.002) TCGA-FU-A3HZ-01 13 41508024 41508024 A C ELF1 Missense_Mutation p.F466C 0.13 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 13 41932524 41932524 C A NAA16 Missense_Mutation p.S391Y 0.30 deleterious(0.02) benign(0.285) TCGA-FU-A3HZ-01 13 42044882 42044882 A G RGCC 3'UTR 0.36 TCGA-FU-A3HZ-01 13 42277492 42277492 T G VWA8 Missense_Mutation p.S1058R 0.41 tolerated(0.12) benign(0.002) TCGA-FU-A3HZ-01 13 43181040 43181040 C T TNFSF11 Nonsense_Mutation p.R314* 0.33 TCGA-FU-A3HZ-01 13 43934081 43934081 G A ENOX1 Silent p.C165C 0.45 TCGA-FU-A3HZ-01 13 44462906 44462906 T G LACC1 Silent p.T307T 0.15 TCGA-FU-A3HZ-01 13 46946643 46946643 C A KIAA0226L 5'UTR 0.30 TCGA-FU-A3HZ-01 13 47466697 47466697 A G HTR2A Silent p.L147L 0.25 TCGA-FU-A3HZ-01 13 50366632 50366632 T G KPNA3 Missense_Mutation p.N4T 0.11 tolerated(0.18) benign(0.174) TCGA-FU-A3HZ-01 13 51568837 51568837 C A GUCY1B2 RNA 0.35 TCGA-FU-A3HZ-01 13 51936064 51936064 T G SERPINE3 Missense_Mutation p.I402M 0.33 tolerated_low_confidence(0.1) benign(0.02) TCGA-FU-A3HZ-01 13 52605691 52605691 T G UTP14C 3'UTR 0.24 TCGA-FU-A3HZ-01 13 58299457 58299457 T G PCDH17 3'UTR 0.39 TCGA-FU-A3HZ-01 13 72134009 72134009 G A DACH1 Missense_Mutation p.R462C 0.35 probably_damaging(0.962) TCGA-FU-A3HZ-01 13 74265008 74265008 G T KLF12 3'UTR 0.51 TCGA-FU-A3HZ-01 13 77580765 77580765 C A FBXL3 3'UTR 0.50 TCGA-FU-A3HZ-01 13 79190810 79190810 A C RNF219 Silent p.T362T 0.20 TCGA-FU-A3HZ-01 13 79894696 79894696 A C RBM26 3'UTR 0.15 TCGA-FU-A3HZ-01 13 84455409 84455409 G A SLITRK1 Silent p.F78F 0.58 TCGA-FU-A3HZ-01 13 88330593 88330593 T G SLITRK5 3'UTR 0.43 TCGA-FU-A3HZ-01 13 92101146 92101146 C A GPC5 Missense_Mutation p.L99I 0.36 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 13 93518569 93518569 G A GPC5 Silent p.K532K 0.38 TCGA-FU-A3HZ-01 13 93879171 93879171 G T GPC6 5'UTR 0.22 TCGA-FU-A3HZ-01 13 95899248 95899248 C T ABCC4 Missense_Mutation p.G96E 0.28 deleterious(0) probably_damaging(0.99) TCGA-FU-A3HZ-01 13 96233528 96233528 C A DZIP1 3'UTR 0.52 TCGA-FU-A3HZ-01 13 98649782 98649782 T C IPO5 Intron 0.37 TCGA-FU-A3HZ-01 13 99446896 99446896 G A DOCK9 3'UTR 0.43 TCGA-FU-A3HZ-01 14 101010247 101010247 T G BEGAIN Missense_Mutation p.N100T 0.52 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 14 101513678 101513678 C T MIR539 RNA 0.31 TCGA-FU-A3HZ-01 14 101531976 101531976 C T MIR369 RNA 0.47 TCGA-FU-A3HZ-01 14 102477085 102477085 A G DYNC1H1 Missense_Mutation p.I2138M 0.41 probably_damaging(0.98) TCGA-FU-A3HZ-01 14 105412935 105412935 C T AHNAK2 Silent p.P2951P 0.41 TCGA-FU-A3HZ-01 14 105518019 105518019 C T GPR132 Missense_Mutation p.G152D 0.33 deleterious(0) probably_damaging(0.995) TCGA-FU-A3HZ-01 14 105693049 105693049 C A BRF1 Missense_Mutation p.E279D 0.20 deleterious(0.01) probably_damaging(0.95) TCGA-FU-A3HZ-01 14 106311249 106311249 C A IGHD Missense_Mutation p.K105N 0.39 tolerated(0.45) benign(0.17) TCGA-FU-A3HZ-01 14 106471469 106471469 G T IGHV1-3 Missense_Mutation p.A43D 0.30 deleterious(0) probably_damaging(0.943) TCGA-FU-A3HZ-01 14 106877685 106877685 C A IGHV4-39 Missense_Mutation p.K103N 0.08 deleterious(0.01) probably_damaging(0.959) TCGA-FU-A3HZ-01 14 20781758 20781758 C T CCNB1IP1 Missense_Mutation p.R167H 0.30 deleterious(0.01) probably_damaging(0.931) TCGA-FU-A3HZ-01 14 21756191 21756191 C G RPGRIP1 Missense_Mutation p.A19G 0.35 tolerated(0.51) benign(0.012) TCGA-FU-A3HZ-01 14 22591419 22591419 C A TRAV26-1 5'UTR 0.53 TCGA-FU-A3HZ-01 14 23595124 23595124 A C SLC7A8 3'UTR 0.31 TCGA-FU-A3HZ-01 14 23795049 23795049 T C PABPN1 3'UTR 0.21 TCGA-FU-A3HZ-01 14 23862233 23862233 G A MYH6 Missense_Mutation p.R1047C 0.12 deleterious(0.03) probably_damaging(0.97) TCGA-FU-A3HZ-01 14 24030822 24030822 G A AP1G2 Missense_Mutation p.P586S 0.48 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 14 24524340 24524340 C A LRRC16B Missense_Mutation p.Q176K 0.53 deleterious(0) possibly_damaging(0.713) TCGA-FU-A3HZ-01 14 24737824 24737824 A G RABGGTA Missense_Mutation p.L301P 0.43 deleterious(0.02) probably_damaging(0.99) TCGA-FU-A3HZ-01 14 24836541 24836541 G C NFATC4 Intron 0.39 TCGA-FU-A3HZ-01 14 24882303 24882303 C T NYNRIN Missense_Mutation p.R915C 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 14 26916252 26916252 T G NOVA1 3'UTR 0.39 TCGA-FU-A3HZ-01 14 30066829 30066829 A C PRKD1 Missense_Mutation p.S768A 0.32 tolerated(0.06) probably_damaging(0.951) TCGA-FU-A3HZ-01 14 31358935 31358935 G T COCH Nonsense_Mutation p.E531* 0.53 TCGA-FU-A3HZ-01 14 33836443 33836443 T G NPAS3 Missense_Mutation p.F146C 0.28 deleterious(0.01) possibly_damaging(0.759) TCGA-FU-A3HZ-01 14 34270842 34270842 A C NPAS3 3'Flank 0.37 TCGA-FU-A3HZ-01 14 36789696 36789696 G T MBIP Silent p.I33I 0.47 TCGA-FU-A3HZ-01 14 36841205 36841205 C A DPPA3P2 RNA 0.29 TCGA-FU-A3HZ-01 14 36988394 36988394 C T NKX2-1 Missense_Mutation p.A87T 0.54 tolerated(0.23) benign(0.158) TCGA-FU-A3HZ-01 14 39777662 39777662 A C CTAGE5 Missense_Mutation p.K360T 0.26 deleterious(0.02) benign(0.287) TCGA-FU-A3HZ-01 14 42355841 42355841 C A LRFN5 Missense_Mutation p.L5I 0.36 tolerated(0.08) benign(0.017) TCGA-FU-A3HZ-01 14 42373692 42373692 G T LRFN5 3'UTR 0.27 TCGA-FU-A3HZ-01 14 47310735 47310735 C T MDGA2 3'UTR 0.43 TCGA-FU-A3HZ-01 14 47601038 47601038 C A MDGA2 Missense_Mutation p.K268N 0.54 tolerated(0.06) benign(0.187) TCGA-FU-A3HZ-01 14 50044352 50044352 G A RPS29 3'UTR 0.41 TCGA-FU-A3HZ-01 14 51230551 51230551 G A NIN Silent p.P589P 0.45 TCGA-FU-A3HZ-01 14 52520402 52520402 C A NID2 Nonsense_Mutation p.E442* 0.50 TCGA-FU-A3HZ-01 14 53184808 53184808 A C PSMC6 Missense_Mutation p.K194T 0.54 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 14 53341944 53341944 A C FERMT2 Missense_Mutation p.I365M 0.50 tolerated(0.29) benign(0.361) TCGA-FU-A3HZ-01 14 54942008 54942008 T G GMFB 3'UTR 0.33 TCGA-FU-A3HZ-01 14 54942138 54942138 A C GMFB 3'UTR 0.29 TCGA-FU-A3HZ-01 14 55513820 55513820 T C SOCS4 3'UTR 0.17 TCGA-FU-A3HZ-01 14 55817284 55817284 G A FBXO34 Missense_Mutation p.R59Q 0.39 tolerated(0.15) benign(0.136) TCGA-FU-A3HZ-01 14 55817886 55817886 G T FBXO34 Nonsense_Mutation p.E260* 0.28 TCGA-FU-A3HZ-01 14 55903419 55903419 T G TBPL2 Silent p.S156S 0.35 TCGA-FU-A3HZ-01 14 57755655 57755655 T G AP5M1 3'UTR 0.31 TCGA-FU-A3HZ-01 14 58605625 58605625 G A C14orf37 Missense_Mutation p.A151V 0.29 tolerated(0.21) benign(0.001) TCGA-FU-A3HZ-01 14 58817869 58817869 G T ARID4A Missense_Mutation p.D495Y 0.33 deleterious(0.02) possibly_damaging(0.562) TCGA-FU-A3HZ-01 14 60074026 60074026 T G RTN1 Missense_Mutation p.K650N 0.12 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 14 61746835 61746835 T C TMEM30B Missense_Mutation p.D344G 0.09 tolerated(0.15) benign(0.281) TCGA-FU-A3HZ-01 14 62567172 62567172 C T SYT16 Missense_Mutation p.T562M 0.46 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 14 64449481 64449481 G T SYNE2 Missense_Mutation p.R657I 0.33 probably_damaging(0.999) TCGA-FU-A3HZ-01 14 64529495 64529495 G T SYNE2 Missense_Mutation p.R3365I 0.42 possibly_damaging(0.812) TCGA-FU-A3HZ-01 14 65412756 65412756 T C RAB15 3'UTR 0.38 TCGA-FU-A3HZ-01 14 66208817 66208817 C T FUT8 Nonsense_Mutation p.R473* 0.45 TCGA-FU-A3HZ-01 14 68229033 68229033 A C ZFYVE26 Missense_Mutation p.F2086V 0.36 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 14 69254566 69254566 A G ZFP36L1 3'UTR 0.44 TCGA-FU-A3HZ-01 14 70714445 70714445 C A ADAM21P1 RNA 0.23 TCGA-FU-A3HZ-01 14 70924354 70924354 G T ADAM21 Missense_Mutation p.L46F 0.18 deleterious(0.02) possibly_damaging(0.787) TCGA-FU-A3HZ-01 14 70924619 70924619 G T ADAM21 Missense_Mutation p.V135L 0.43 tolerated(0.33) benign(0.004) TCGA-FU-A3HZ-01 14 71575464 71575464 C T PCNX Missense_Mutation p.R2149W 0.62 deleterious(0) probably_damaging(0.958) TCGA-FU-A3HZ-01 14 72054863 72054863 G T SIPA1L1 Nonsense_Mutation p.E92* 0.50 TCGA-FU-A3HZ-01 14 72818871 72818871 C T RGS6 Silent p.S51S 0.24 TCGA-FU-A3HZ-01 14 73659433 73659433 G T PSEN1 Missense_Mutation p.M210I 0.40 deleterious(0.03) possibly_damaging(0.627) TCGA-FU-A3HZ-01 14 73685914 73685914 T G PSEN1 Missense_Mutation p.F441V 0.27 deleterious(0.01) probably_damaging(0.96) TCGA-FU-A3HZ-01 14 73742659 73742659 G T NUMB 3'UTR 0.41 TCGA-FU-A3HZ-01 14 74422517 74422517 G A COQ6 Missense_Mutation p.A123T 0.33 deleterious(0.05) benign(0.296) TCGA-FU-A3HZ-01 14 74764640 74764640 C T ABCD4 Missense_Mutation p.D140N 0.31 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 14 75323691 75323691 C T PROX2 Missense_Mutation p.R247H 0.23 deleterious(0) probably_damaging(0.937) TCGA-FU-A3HZ-01 14 75377988 75377988 G A RPS6KL1 Silent p.S209S 0.11 TCGA-FU-A3HZ-01 14 75513429 75513429 G T MLH3 Missense_Mutation p.S977Y 0.27 deleterious(0.04) benign(0.01) TCGA-FU-A3HZ-01 14 75746456 75746456 T G FOS Intron 0.25 TCGA-FU-A3HZ-01 14 77715708 77715708 A G TMEM63C Missense_Mutation p.N649D 0.44 tolerated(1) possibly_damaging(0.7) TCGA-FU-A3HZ-01 14 77751885 77751885 G A POMT2 Missense_Mutation p.R475C 0.30 deleterious(0) probably_damaging(0.993) TCGA-FU-A3HZ-01 14 78140375 78140375 G T ALKBH1 Nonsense_Mutation p.S317* 0.23 TCGA-FU-A3HZ-01 14 78227203 78227203 C A C14orf178 5'UTR 0.12 TCGA-FU-A3HZ-01 14 81728083 81728083 A C STON2 3'UTR 0.25 TCGA-FU-A3HZ-01 14 86090287 86090287 G A FLRT2 3'UTR 0.43 TCGA-FU-A3HZ-01 14 86092305 86092305 G T FLRT2 3'UTR 0.27 TCGA-FU-A3HZ-01 14 88652276 88652276 C T KCNK10 Missense_Mutation p.R412H 0.20 tolerated_low_confidence(0.12) benign(0.007) TCGA-FU-A3HZ-01 14 88729708 88729708 G T KCNK10 Silent p.I80I 0.39 TCGA-FU-A3HZ-01 14 91340105 91340105 T G RPS6KA5 Missense_Mutation p.K677N 0.41 deleterious(0.04) benign(0.044) TCGA-FU-A3HZ-01 14 91952071 91952071 T G SMEK1 Missense_Mutation p.T68P 0.50 deleterious(0.02) probably_damaging(0.986) TCGA-FU-A3HZ-01 14 92258717 92258717 T G TC2N Missense_Mutation p.K347N 0.54 deleterious(0) probably_damaging(0.993) TCGA-FU-A3HZ-01 14 92471878 92471878 T G TRIP11 Missense_Mutation p.E814D 0.47 tolerated(0.49) benign(0.019) TCGA-FU-A3HZ-01 14 93118693 93118693 C T RIN3 Silent p.G433G 0.21 TCGA-FU-A3HZ-01 14 93534259 93534259 A T ITPK1 Intron 0.44 TCGA-FU-A3HZ-01 14 93649544 93649544 A C MOAP1 Silent p.G348G 0.31 TCGA-FU-A3HZ-01 14 93814507 93814507 T G COX8C 3'UTR 0.38 TCGA-FU-A3HZ-01 14 94044291 94044291 T G UNC79 Missense_Mutation p.F595C 0.06 tolerated(0.18) benign(0.005) TCGA-FU-A3HZ-01 14 94464410 94464410 C T LINC00521 RNA 0.23 TCGA-FU-A3HZ-01 14 95552946 95552946 G T DICER1 3'UTR 0.32 TCGA-FU-A3HZ-01 14 95596528 95596528 A G DICER1 Missense_Mutation p.V147A 0.20 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 14 95669685 95669685 A G CLMN Silent p.R667R 0.37 TCGA-FU-A3HZ-01 14 99637615 99637615 C A BCL11B 3'UTR 0.25 TCGA-FU-A3HZ-01 15 100594175 100594175 A G ADAMTS17 Missense_Mutation p.V741A 0.39 deleterious(0.01) benign(0.209) TCGA-FU-A3HZ-01 15 101120525 101120525 T G LINS Missense_Mutation p.L144F 0.53 deleterious(0) probably_damaging(0.978) TCGA-FU-A3HZ-01 15 101121044 101121044 T G LINS Missense_Mutation p.K2Q 0.32 tolerated(0.08) possibly_damaging(0.714) TCGA-FU-A3HZ-01 15 101447381 101447381 A C ALDH1A3 Missense_Mutation p.K430T 0.16 deleterious(0.04) benign(0.006) TCGA-FU-A3HZ-01 15 102197161 102197161 G A TARSL2 Nonsense_Mutation p.R742* 0.28 TCGA-FU-A3HZ-01 15 20739623 20739623 C G GOLGA6L6 Missense_Mutation p.E709D 0.24 unknown(0) TCGA-FU-A3HZ-01 15 20876483 20876483 A C NBEAP1 RNA 0.15 TCGA-FU-A3HZ-01 15 22382811 22382811 A G OR4N4 Silent p.L113L 0.33 TCGA-FU-A3HZ-01 15 22848316 22848316 A C TUBGCP5 Silent p.V302V 0.33 TCGA-FU-A3HZ-01 15 23445307 23445307 G A AC100757.1 3'Flank 0.32 TCGA-FU-A3HZ-01 15 24923533 24923533 T C NPAP1 Missense_Mutation p.F840S 0.49 tolerated(0.37) benign(0.133) TCGA-FU-A3HZ-01 15 24926730 24926730 C A NPAP1 3'UTR 0.36 TCGA-FU-A3HZ-01 15 25415913 25415913 G T SNORD115-1 RNA 0.42 TCGA-FU-A3HZ-01 15 25485057 25485057 G A SNORD115-38 RNA 0.29 TCGA-FU-A3HZ-01 15 25924953 25924953 C A ATP10A Missense_Mutation p.K1345N 0.41 tolerated(0.51) benign(0) TCGA-FU-A3HZ-01 15 26812812 26812812 A C GABRB3 Missense_Mutation p.Y251D 0.59 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 15 27572007 27572007 C T GABRG3 Nonsense_Mutation p.R108* 0.53 TCGA-FU-A3HZ-01 15 28436121 28436121 T C HERC2 Missense_Mutation p.D2880G 0.29 benign(0.268) TCGA-FU-A3HZ-01 15 30376974 30376974 T C GOLGA8J Silent p.L17L 0.16 TCGA-FU-A3HZ-01 15 31197563 31197563 G T FAN1 Nonsense_Mutation p.G233* 0.43 TCGA-FU-A3HZ-01 15 31332543 31332543 G A TRPM1 Silent p.F715F 0.50 TCGA-FU-A3HZ-01 15 32929146 32929146 G T ARHGAP11A Missense_Mutation p.K724N 0.31 tolerated(0.52) benign(0.015) TCGA-FU-A3HZ-01 15 33025213 33025213 C T GREM1 3'UTR 0.33 TCGA-FU-A3HZ-01 15 33445566 33445566 G A FMN1 Missense_Mutation p.T517M 0.23 tolerated(1) benign(0.008) TCGA-FU-A3HZ-01 15 33944986 33944986 C T RYR3 Missense_Mutation p.R1404W 0.38 probably_damaging(0.992) TCGA-FU-A3HZ-01 15 34158784 34158784 G T AVEN 3'UTR 0.53 TCGA-FU-A3HZ-01 15 34376316 34376316 C A EMC7 3'UTR 0.36 TCGA-FU-A3HZ-01 15 34654791 34654791 A C LPCAT4 Silent p.V289V 0.58 TCGA-FU-A3HZ-01 15 34672197 34672197 A C GOLGA8A 3'UTR 0.48 TCGA-FU-A3HZ-01 15 35086895 35086895 G A ACTC1 Missense_Mutation p.R39C 0.44 tolerated_low_confidence(0.06) probably_damaging(0.981) TCGA-FU-A3HZ-01 15 35176741 35176741 G T AQR Silent p.I1004I 0.41 TCGA-FU-A3HZ-01 15 37388629 37388629 T G MEIS2 Missense_Mutation p.H83P 0.27 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 15 40568273 40568273 G A PAK6 Missense_Mutation p.R675Q 0.42 deleterious(0) benign(0.129) TCGA-FU-A3HZ-01 15 40569629 40569629 A C PAK6 3'UTR 0.24 TCGA-FU-A3HZ-01 15 40633048 40633048 A G C15orf52 Silent p.S35S 0.31 TCGA-FU-A3HZ-01 15 40633088 40633088 G A C15orf52 Missense_Mutation p.A22V 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.892) TCGA-FU-A3HZ-01 15 40685514 40685514 G T KNSTRN Intron 0.48 TCGA-FU-A3HZ-01 15 41772871 41772871 C T RTF1 Nonsense_Mutation p.R707* 0.36 TCGA-FU-A3HZ-01 15 42042106 42042106 T G MGA Missense_Mutation p.L2101V 0.56 tolerated_low_confidence(0.83) benign(0.001) TCGA-FU-A3HZ-01 15 42058580 42058580 G T MGA Missense_Mutation p.R2767I 0.38 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-FU-A3HZ-01 15 42178429 42178429 G A SPTBN5 Missense_Mutation p.R342W 0.43 probably_damaging(0.981) TCGA-FU-A3HZ-01 15 42455913 42455913 T C VPS39 Silent p.E680E 0.27 TCGA-FU-A3HZ-01 15 42457228 42457228 A G VPS39 Silent p.G621G 0.40 TCGA-FU-A3HZ-01 15 42983559 42983559 G T STARD9 Missense_Mutation p.K3261N 0.30 benign(0.023) TCGA-FU-A3HZ-01 15 43069311 43069311 A C TTBK2 Missense_Mutation p.L443V 0.35 deleterious(0) probably_damaging(0.955) TCGA-FU-A3HZ-01 15 43235170 43235170 T G UBR1 3'UTR 0.43 TCGA-FU-A3HZ-01 15 43584214 43584214 T C TGM7 Missense_Mutation p.E174G 0.30 deleterious(0.01) benign(0.282) TCGA-FU-A3HZ-01 15 43705389 43705389 T C TP53BP1 Missense_Mutation p.T1745A 0.44 deleterious(0) possibly_damaging(0.907) TCGA-FU-A3HZ-01 15 44094050 44094050 A C HYPK 3'UTR 0.36 TCGA-FU-A3HZ-01 15 44120351 44120351 G T WDR76 Missense_Mutation p.K83N 0.45 deleterious(0.04) benign(0.149) TCGA-FU-A3HZ-01 15 44707260 44707260 A C CASC4 3'UTR 0.50 TCGA-FU-A3HZ-01 15 44876670 44876670 C A SPG11 Missense_Mutation p.E1736D 0.42 tolerated(0.64) possibly_damaging(0.801) TCGA-FU-A3HZ-01 15 45426095 45426095 G A DUOX1 Missense_Mutation p.R31Q 0.43 deleterious(0.01) probably_damaging(0.984) TCGA-FU-A3HZ-01 15 48058792 48058792 C A SEMA6D Intron 0.38 TCGA-FU-A3HZ-01 15 48434765 48434765 C A MYEF2 3'UTR 0.55 TCGA-FU-A3HZ-01 15 48493683 48493683 T G CTXN2 Silent p.S62S 0.19 TCGA-FU-A3HZ-01 15 48495218 48495218 C A CTXN2 3'UTR 0.37 TCGA-FU-A3HZ-01 15 48700827 48700827 G T FBN1 3'UTR 0.47 TCGA-FU-A3HZ-01 15 49118084 49118084 C A SHC4 3'UTR 0.40 TCGA-FU-A3HZ-01 15 49917417 49917417 A C DTWD1 Missense_Mutation p.K18T 0.43 tolerated_low_confidence(0.14) benign(0.001) TCGA-FU-A3HZ-01 15 50788052 50788052 A C USP8 Missense_Mutation p.N889T 0.19 tolerated(0.07) probably_damaging(0.945) TCGA-FU-A3HZ-01 15 51507406 51507406 C A CYP19A1 Missense_Mutation p.E294D 0.31 tolerated(0.45) benign(0.036) TCGA-FU-A3HZ-01 15 51689777 51689777 T C GLDN Missense_Mutation p.F267L 0.12 tolerated(0.32) benign(0.008) TCGA-FU-A3HZ-01 15 52338060 52338060 T G MAPK6 5'UTR 0.37 TCGA-FU-A3HZ-01 15 52902315 52902315 G A FAM214A Missense_Mutation p.R266C 0.11 deleterious(0.04) benign(0.022) TCGA-FU-A3HZ-01 15 54838927 54838927 C T UNC13C Missense_Mutation p.L1902F 0.47 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-FU-A3HZ-01 15 55497826 55497826 A - RAB27A Frame_Shift_Del p.M182Rfs*29 0.33 TCGA-FU-A3HZ-01 15 56130719 56130719 T G NEDD4 Missense_Mutation p.E1052D 0.14 tolerated(0.16) possibly_damaging(0.719) TCGA-FU-A3HZ-01 15 56748670 56748670 T G MNS1 Missense_Mutation p.K92T 0.18 deleterious(0) benign(0.169) TCGA-FU-A3HZ-01 15 57578977 57578977 C A TCF12 3'UTR 0.40 TCGA-FU-A3HZ-01 15 60715208 60715208 A C NARG2 3'UTR 0.35 TCGA-FU-A3HZ-01 15 60803653 60803653 C T RORA Missense_Mutation p.D231N 0.36 tolerated(0.25) benign(0.001) TCGA-FU-A3HZ-01 15 62204064 62204064 T G VPS13C Missense_Mutation p.K2897T 0.32 tolerated(0.06) possibly_damaging(0.9) TCGA-FU-A3HZ-01 15 62537946 62537946 T G AC126323.1 5'Flank 0.18 TCGA-FU-A3HZ-01 15 63481897 63481897 T G RAB8B Missense_Mutation p.L25R 0.33 deleterious(0) benign(0.166) TCGA-FU-A3HZ-01 15 63597826 63597826 C A APH1B Missense_Mutation p.S207Y 0.32 deleterious(0) benign(0.347) TCGA-FU-A3HZ-01 15 63883162 63883162 A G USP3 3'UTR 0.17 TCGA-FU-A3HZ-01 15 63964722 63964722 G A HERC1 Missense_Mutation p.P2673L 0.35 probably_damaging(0.999) TCGA-FU-A3HZ-01 15 64977931 64977931 C A ZNF609 3'UTR 0.14 TCGA-FU-A3HZ-01 15 65412231 65412231 T C PDCD7 Silent p.K357K 0.37 TCGA-FU-A3HZ-01 15 65495702 65495702 A C CILP Missense_Mutation p.F342L 0.30 tolerated(0.65) benign(0.009) TCGA-FU-A3HZ-01 15 65551270 65551270 T G PARP16 3'UTR 0.12 TCGA-FU-A3HZ-01 15 65982856 65982856 T G DENND4A Missense_Mutation p.K1358T 0.07 tolerated(0.41) benign(0.002) TCGA-FU-A3HZ-01 15 66641650 66641650 T A TIPIN Intron 0.33 TCGA-FU-A3HZ-01 15 68583077 68583077 G A FEM1B Missense_Mutation p.E461K 0.35 tolerated(0.49) benign(0.078) TCGA-FU-A3HZ-01 15 72460141 72460141 C T GRAMD2 Missense_Mutation p.G103D 0.23 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 15 74426936 74426936 G T ISLR2 Missense_Mutation p.C614F 0.32 tolerated(0.35) probably_damaging(0.991) TCGA-FU-A3HZ-01 15 74922135 74922135 A G CLK3 Missense_Mutation p.T610A 0.35 deleterious(0.01) benign(0.057) TCGA-FU-A3HZ-01 15 75015209 75015209 C T CYP1A1 Missense_Mutation p.R77Q 0.32 tolerated(0.35) benign(0.023) TCGA-FU-A3HZ-01 15 75663495 75663495 T G SIN3A 3'UTR 0.33 TCGA-FU-A3HZ-01 15 75969500 75969500 G A CSPG4 Missense_Mutation p.A1787V 0.29 tolerated(0.29) benign(0.01) TCGA-FU-A3HZ-01 15 75982483 75982483 G T CSPG4 Nonsense_Mutation p.S308* 0.33 TCGA-FU-A3HZ-01 15 76074681 76074681 G T RN7SL319P 5'Flank 0.37 TCGA-FU-A3HZ-01 15 78213884 78213884 C T RP11-114H24.7 Intron 0.29 TCGA-FU-A3HZ-01 15 78213936 78213936 C A RP11-114H24.7 Intron 0.29 TCGA-FU-A3HZ-01 15 80452212 80452212 C T FAH Missense_Mutation p.R103W 0.27 deleterious(0) possibly_damaging(0.843) TCGA-FU-A3HZ-01 15 81243605 81243605 C A KIAA1199 3'UTR 0.14 TCGA-FU-A3HZ-01 15 81591840 81591840 T G IL16 Missense_Mutation p.F725V 0.45 deleterious(0) probably_damaging(0.987) TCGA-FU-A3HZ-01 15 83485560 83485560 G T WHAMM Silent p.V300V 0.39 TCGA-FU-A3HZ-01 15 83926040 83926040 C A BNC1 3'UTR 0.38 TCGA-FU-A3HZ-01 15 84568399 84568399 A G ADAMTSL3 Missense_Mutation p.E539G 0.40 deleterious(0.03) benign(0.005) TCGA-FU-A3HZ-01 15 85166945 85166945 C A ZSCAN2 3'UTR 0.43 TCGA-FU-A3HZ-01 15 85619134 85619134 T G PDE8A Missense_Mutation p.V159G 0.25 deleterious(0) probably_damaging(0.962) TCGA-FU-A3HZ-01 15 86123367 86123367 T C AKAP13 Missense_Mutation p.S690P 0.32 tolerated_low_confidence(1) benign(0) TCGA-FU-A3HZ-01 15 89060067 89060067 T C DET1 Missense_Mutation p.D481G 0.23 deleterious(0) probably_damaging(0.995) TCGA-FU-A3HZ-01 15 89155061 89155061 T C MIR7-2 RNA 0.38 TCGA-FU-A3HZ-01 15 89449895 89449895 C T MFGE8 Missense_Mutation p.E168K 0.46 tolerated(1) benign(0.002) TCGA-FU-A3HZ-01 15 90437251 90437251 A G AP3S2 5'UTR 0.35 TCGA-FU-A3HZ-01 15 91043346 91043346 C T IQGAP1 3'UTR 0.09 TCGA-FU-A3HZ-01 15 93011864 93011864 A G ST8SIA2 3'UTR 0.15 TCGA-FU-A3HZ-01 16 11824515 11824515 G T TXNDC11 Missense_Mutation p.L229I 0.14 deleterious(0.03) probably_damaging(0.976) TCGA-FU-A3HZ-01 16 1374764 1374764 A G UBE2I Silent p.R149R 0.33 TCGA-FU-A3HZ-01 16 15690035 15690035 G A KIAA0430 3'UTR 0.40 TCGA-FU-A3HZ-01 16 15788036 15788036 A G NDE1 Missense_Mutation p.T240A 0.24 tolerated(0.5) benign(0.001) TCGA-FU-A3HZ-01 16 17201968 17201968 A C XYLT1 3'UTR 0.43 TCGA-FU-A3HZ-01 16 1820163 1820163 T C MAPK8IP3 3'UTR 0.25 TCGA-FU-A3HZ-01 16 19049365 19049365 A C TMC7 Missense_Mutation p.K392T 0.28 tolerated(0.58) benign(0.01) TCGA-FU-A3HZ-01 16 20871284 20871284 C T DCUN1D3 Missense_Mutation p.R280Q 0.31 tolerated(0.44) benign(0.004) TCGA-FU-A3HZ-01 16 20981115 20981115 G A DNAH3 Silent p.S2819S 0.32 TCGA-FU-A3HZ-01 16 21086767 21086767 C T DNAH3 Splice_Site p.X1028_splice 0.28 TCGA-FU-A3HZ-01 16 21854785 21854785 T G NPIPB4 Missense_Mutation p.K156T 0.07 probably_damaging(0.936) TCGA-FU-A3HZ-01 16 21995716 21995716 A G PDZD9 Missense_Mutation p.W163R 0.14 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 16 24836737 24836737 A C TNRC6A 3'UTR 0.44 TCGA-FU-A3HZ-01 16 2499869 2499869 C A CCNF Missense_Mutation p.F480L 0.29 tolerated(0.22) possibly_damaging(0.651) TCGA-FU-A3HZ-01 16 25162906 25162906 G T LCMT1 Nonsense_Mutation p.E146* 0.48 TCGA-FU-A3HZ-01 16 2647264 2647264 C A PDPK1 Missense_Mutation p.F514L 0.32 deleterious(0) possibly_damaging(0.566) TCGA-FU-A3HZ-01 16 27373632 27373632 G T IL4R Missense_Mutation p.R320M 0.15 deleterious(0.01) possibly_damaging(0.847) TCGA-FU-A3HZ-01 16 28354389 28354389 A G NPIPB6 Missense_Mutation p.S273P 0.12 tolerated_low_confidence(0.11) probably_damaging(0.963) TCGA-FU-A3HZ-01 16 30495257 30495257 G T ITGAL Missense_Mutation p.D278Y 0.33 deleterious(0.01) benign(0.344) TCGA-FU-A3HZ-01 16 30724941 30724941 G A SRCAP Missense_Mutation p.R801H 0.45 unknown(0) TCGA-FU-A3HZ-01 16 30735135 30735135 A C SRCAP Missense_Mutation p.T1464P 0.34 benign(0.001) TCGA-FU-A3HZ-01 16 3081295 3081295 G A CCDC64B Intron 0.50 TCGA-FU-A3HZ-01 16 31474058 31474058 T G ARMC5 Missense_Mutation p.F397C 0.11 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 16 31500280 31500280 G A SLC5A2 Missense_Mutation p.D454N 0.41 tolerated(0.18) probably_damaging(0.982) TCGA-FU-A3HZ-01 16 31765755 31765755 A C ZNF720 Intron 0.35 TCGA-FU-A3HZ-01 16 3304167 3304167 A C MEFV Missense_Mutation p.S301A 0.40 tolerated(0.55) benign(0.01) TCGA-FU-A3HZ-01 16 33965549 33965549 C A RNA5-8SP2 RNA 0.23 TCGA-FU-A3HZ-01 16 3900884 3900884 G A CREBBP Missense_Mutation p.S71L 0.19 probably_damaging(0.986) TCGA-FU-A3HZ-01 16 4015835 4015835 C T ADCY9 Missense_Mutation p.E1335K 0.42 tolerated_low_confidence(0.33) benign(0.098) TCGA-FU-A3HZ-01 16 46766398 46766398 T G MYLK3 Missense_Mutation p.E395A 0.32 tolerated(0.24) benign(0.079) TCGA-FU-A3HZ-01 16 47733408 47733408 C T PHKB 3'UTR 0.51 TCGA-FU-A3HZ-01 16 49660121 49660121 G A ZNF423 Silent p.N1179N 0.46 TCGA-FU-A3HZ-01 16 50351022 50351022 G A BRD7 3'Flank 0.10 TCGA-FU-A3HZ-01 16 50353864 50353864 G A BRD7 Nonsense_Mutation p.R613* 0.34 TCGA-FU-A3HZ-01 16 50835467 50835467 C T CYLD 3'UTR 0.25 TCGA-FU-A3HZ-01 16 53403659 53403659 G T RP11-44F14.1 RNA 0.50 TCGA-FU-A3HZ-01 16 54317587 54317587 T G IRX3 3'UTR 0.58 TCGA-FU-A3HZ-01 16 55562474 55562474 G A LPCAT2 Missense_Mutation p.R166Q 0.43 deleterious(0.01) benign(0.014) TCGA-FU-A3HZ-01 16 56395604 56395604 A C AMFR 3'UTR 0.10 TCGA-FU-A3HZ-01 16 56704827 56704827 C A MT1H Missense_Mutation p.P38T 0.48 deleterious(0.03) unknown(0) TCGA-FU-A3HZ-01 16 57063770 57063770 T G NLRC5 Splice_Site p.X776_splice 0.36 TCGA-FU-A3HZ-01 16 57392781 57392781 C T CCL22 Missense_Mutation p.A18V 0.18 tolerated(1) unknown(0) TCGA-FU-A3HZ-01 16 57448995 57448995 C T CCL17 Nonsense_Mutation p.R25* 0.38 TCGA-FU-A3HZ-01 16 6367009 6367009 G T RBFOX1 Missense_Mutation p.R6I 0.19 deleterious_low_confidence(0) benign(0.015) TCGA-FU-A3HZ-01 16 66620928 66620928 C T CMTM2 Missense_Mutation p.A158V 0.11 tolerated(1) benign(0.019) TCGA-FU-A3HZ-01 16 66920779 66920779 T G PDP2 3'UTR 0.36 TCGA-FU-A3HZ-01 16 67201667 67201667 G A HSF4 Missense_Mutation p.G300E 0.50 tolerated(0.1) possibly_damaging(0.907) TCGA-FU-A3HZ-01 16 67268080 67268080 C T FHOD1 Missense_Mutation p.R509Q 0.32 tolerated(0.82) benign(0.001) TCGA-FU-A3HZ-01 16 67670646 67670646 G T CTCF Nonsense_Mutation p.E631* 0.27 TCGA-FU-A3HZ-01 16 67680824 67680824 C T RLTPR Missense_Mutation p.R187C 0.28 tolerated(0.08) possibly_damaging(0.731) TCGA-FU-A3HZ-01 16 67688120 67688120 C A RLTPR Missense_Mutation p.F1063L 0.38 deleterious(0) probably_damaging(0.977) TCGA-FU-A3HZ-01 16 67995560 67995560 A G SLC12A4 Missense_Mutation p.V89A 0.19 tolerated(1) benign(0.016) TCGA-FU-A3HZ-01 16 68055763 68055763 C T DDX28 Missense_Mutation p.R448Q 0.38 tolerated(0.57) benign(0.003) TCGA-FU-A3HZ-01 16 68894135 68894135 T C TANGO6 Missense_Mutation p.V148A 0.07 tolerated(1) benign(0.001) TCGA-FU-A3HZ-01 16 68953050 68953050 G T TANGO6 Missense_Mutation p.E685D 0.42 tolerated(0.34) benign(0.009) TCGA-FU-A3HZ-01 16 69731009 69731009 T G NFAT5 3'UTR 0.50 TCGA-FU-A3HZ-01 16 69968006 69968006 C T WWP2 Missense_Mutation p.R606C 0.39 tolerated(0.32) probably_damaging(0.999) TCGA-FU-A3HZ-01 16 70253659 70253659 G T FKSG63 5'Flank 0.25 TCGA-FU-A3HZ-01 16 70302241 70302241 G A AARS Missense_Mutation p.A335V 0.09 tolerated(0.2) benign(0.287) TCGA-FU-A3HZ-01 16 70501152 70501152 G A FUK Intron 0.23 TCGA-FU-A3HZ-01 16 70563471 70563471 T G SF3B3 Intron 0.33 TCGA-FU-A3HZ-01 16 70866947 70866947 A C HYDIN Missense_Mutation p.F4568C 0.50 probably_damaging(0.938) TCGA-FU-A3HZ-01 16 71127751 71127751 T G HYDIN Missense_Mutation p.K472T 0.42 probably_damaging(0.973) TCGA-FU-A3HZ-01 16 71736609 71736609 G T PHLPP2 Missense_Mutation p.L104I 0.52 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 16 71961972 71961972 T C IST1 3'Flank 0.12 TCGA-FU-A3HZ-01 16 72820320 72820320 T G ZFHX3 3'UTR 0.23 TCGA-FU-A3HZ-01 16 72827732 72827732 C T ZFHX3 Missense_Mutation p.R2950H 0.45 unknown(0) TCGA-FU-A3HZ-01 16 74340149 74340149 T G PSMD7 3'UTR 0.29 TCGA-FU-A3HZ-01 16 74444526 74444526 G T CLEC18B Silent p.L373L 0.21 TCGA-FU-A3HZ-01 16 74729369 74729369 A G MLKL Missense_Mutation p.I96T 0.35 tolerated(0.27) benign(0.046) TCGA-FU-A3HZ-01 16 76481986 76481986 G T CNTNAP4 Missense_Mutation p.D181Y 0.62 deleterious(0) possibly_damaging(0.886) TCGA-FU-A3HZ-01 16 77245136 77245136 A G SYCE1L Missense_Mutation p.D129G 0.10 deleterious(0.02) possibly_damaging(0.625) TCGA-FU-A3HZ-01 16 77317480 77317480 C T ADAMTS18 3'UTR 0.78 TCGA-FU-A3HZ-01 16 77325241 77325241 C T ADAMTS18 Silent p.E1108E 0.20 TCGA-FU-A3HZ-01 16 818822 818822 G T MSLN 3'UTR 0.39 TCGA-FU-A3HZ-01 16 84793794 84793794 C T USP10 Silent p.I489I 0.33 TCGA-FU-A3HZ-01 16 85708528 85708528 G T GSE1 3'UTR 0.50 TCGA-FU-A3HZ-01 16 86613640 86613640 G A FOXL1 3'UTR 0.47 TCGA-FU-A3HZ-01 16 87436781 87436781 C T MAP1LC3B 3'UTR 0.33 TCGA-FU-A3HZ-01 16 88498918 88498918 T G ZNF469 Silent p.V1652V 0.32 TCGA-FU-A3HZ-01 16 88809355 88809355 G T PIEZO1 Intron 0.45 TCGA-FU-A3HZ-01 16 89645291 89645291 C T CPNE7 Silent p.V128V 0.42 TCGA-FU-A3HZ-01 16 9857627 9857627 A C GRIN2A Silent p.G1258G 0.08 TCGA-FU-A3HZ-01 17 1012271 1012271 T G ABR Intron 0.44 TCGA-FU-A3HZ-01 17 10210289 10210289 G A MYH13 Silent p.N1754N 0.35 TCGA-FU-A3HZ-01 17 10317799 10317799 G T MYH8 Missense_Mutation p.L270I 0.44 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 17 10356223 10356223 C A MYH4 Missense_Mutation p.K1046N 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A3HZ-01 17 10537357 10537357 T G MYH3 Missense_Mutation p.K1500T 0.31 deleterious(0.01) benign(0.022) TCGA-FU-A3HZ-01 17 11700923 11700923 G T DNAH9 Missense_Mutation p.D2745Y 0.37 benign(0.125) TCGA-FU-A3HZ-01 17 12666899 12666899 T G MYOCD Missense_Mutation p.F967V 0.11 deleterious(0) probably_damaging(0.992) TCGA-FU-A3HZ-01 17 16336993 16336993 G A TRPV2 Missense_Mutation p.D699N 0.16 deleterious(0) possibly_damaging(0.838) TCGA-FU-A3HZ-01 17 16676937 16676937 A G CCDC144A 3'UTR 0.12 TCGA-FU-A3HZ-01 17 16734875 16734875 G A KRT16P2 RNA 0.23 TCGA-FU-A3HZ-01 17 17079743 17079743 T G MPRIP Missense_Mutation p.L905V 0.06 tolerated(0.1) possibly_damaging(0.601) TCGA-FU-A3HZ-01 17 17919381 17919381 T C LRRC48 Missense_Mutation p.F444L 0.25 tolerated(0.37) benign(0.029) TCGA-FU-A3HZ-01 17 20692783 20692783 T G RP11-283C24.1 RNA 0.50 TCGA-FU-A3HZ-01 17 21094389 21094389 C G DHRS7B Missense_Mutation p.R301G 0.39 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 17 21911084 21911084 C T RP11-744K17.9 RNA 0.25 TCGA-FU-A3HZ-01 17 25936969 25936969 T G KSR1 Intron 0.40 TCGA-FU-A3HZ-01 17 26913507 26913507 T G SPAG5 Missense_Mutation p.K483T 0.30 tolerated(0.2) possibly_damaging(0.725) TCGA-FU-A3HZ-01 17 28320319 28320319 G T EFCAB5 Nonsense_Mutation p.G302* 0.44 TCGA-FU-A3HZ-01 17 28601061 28601061 T G BLMH Missense_Mutation p.K267T 0.07 tolerated(0.06) probably_damaging(1) TCGA-FU-A3HZ-01 17 29226337 29226337 C T TEFM Silent p.A311A 0.29 TCGA-FU-A3HZ-01 17 29226360 29226360 G T TEFM Missense_Mutation p.L304I 0.27 deleterious(0.04) benign(0.382) TCGA-FU-A3HZ-01 17 29250063 29250063 A T ADAP2 Missense_Mutation p.D67V 0.25 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 17 29556485 29556485 T G NF1 Splice_Site p.X950_splice 0.11 TCGA-FU-A3HZ-01 17 29645333 29645333 T C EVI2A Silent p.K256K 0.33 TCGA-FU-A3HZ-01 17 29677227 29677227 C T NF1 Nonsense_Mutation p.R2450* 0.10 TCGA-FU-A3HZ-01 17 29704563 29704563 C A NF1 3'UTR 0.28 TCGA-FU-A3HZ-01 17 3030623 3030623 A G OR1G1 Missense_Mutation p.S75P 0.42 deleterious(0) probably_damaging(0.979) TCGA-FU-A3HZ-01 17 3101385 3101385 C T OR1A2 Silent p.D191D 0.39 TCGA-FU-A3HZ-01 17 31260256 31260256 G A TMEM98 Missense_Mutation p.D66N 0.26 tolerated(0.07) possibly_damaging(0.831) TCGA-FU-A3HZ-01 17 32483463 32483463 C T ASIC2 Missense_Mutation p.R30H 0.43 tolerated(0.21) probably_damaging(0.932) TCGA-FU-A3HZ-01 17 32582377 32582377 C A CCL2 Silent p.V3V 0.29 TCGA-FU-A3HZ-01 17 3301095 3301095 C A OR1E1 Missense_Mutation p.G204W 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-FU-A3HZ-01 17 33592569 33592569 C A SLFN5 Missense_Mutation p.L780I 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-FU-A3HZ-01 17 33680989 33680989 G T SLFN11 Missense_Mutation p.Q430K 0.47 deleterious(0.03) benign(0.342) TCGA-FU-A3HZ-01 17 33690272 33690272 T C SLFN11 Silent p.P185P 0.37 TCGA-FU-A3HZ-01 17 33884325 33884325 C A SLFN14 Nonsense_Mutation p.E253* 0.42 TCGA-FU-A3HZ-01 17 33905077 33905077 A C PEX12 5'UTR 0.44 TCGA-FU-A3HZ-01 17 33968959 33968959 G A AP2B1 Missense_Mutation p.E501K 0.33 tolerated(0.22) benign(0.096) TCGA-FU-A3HZ-01 17 3643106 3643106 C T ITGAE Missense_Mutation p.V839I 0.33 tolerated(1) benign(0.005) TCGA-FU-A3HZ-01 17 36482659 36482659 C A GPR179 Nonsense_Mutation p.E2265* 0.50 TCGA-FU-A3HZ-01 17 36883512 36883512 T C MLLT6 3'UTR 0.31 TCGA-FU-A3HZ-01 17 36971289 36971289 C T CWC25 Missense_Mutation p.E85K 0.24 deleterious(0) probably_damaging(0.981) TCGA-FU-A3HZ-01 17 37186498 37186498 C T CTD-2206N4.2 5'Flank 0.24 TCGA-FU-A3HZ-01 17 37368006 37368006 T C STAC2 3'UTR 0.33 TCGA-FU-A3HZ-01 17 3802962 3802962 C T P2RX1 Missense_Mutation p.E281K 0.21 tolerated(0.22) benign(0.037) TCGA-FU-A3HZ-01 17 38859538 38859538 G T KRT24 Missense_Mutation p.F136L 0.23 tolerated(1) unknown(0) TCGA-FU-A3HZ-01 17 38904606 38904606 G T KRT25 Missense_Mutation p.L426I 0.31 tolerated(0.22) benign(0.02) TCGA-FU-A3HZ-01 17 39636896 39636896 C T KRT35 Missense_Mutation p.E152K 0.34 deleterious(0.03) possibly_damaging(0.698) TCGA-FU-A3HZ-01 17 3969795 3969795 C A ZZEF1 Nonsense_Mutation p.E1399* 0.27 TCGA-FU-A3HZ-01 17 39910936 39910936 A C JUP 3'UTR 0.41 TCGA-FU-A3HZ-01 17 40330366 40330366 C T KCNH4 Missense_Mutation p.R147H 0.20 tolerated(0.45) benign(0) TCGA-FU-A3HZ-01 17 40721303 40721303 G A MLX Missense_Mutation p.A174T 0.24 deleterious(0.03) probably_damaging(0.943) TCGA-FU-A3HZ-01 17 4072504 4072504 C T ANKFY1 Missense_Mutation p.R1164H 0.21 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 17 41019795 41019795 G A AOC4P RNA 0.34 TCGA-FU-A3HZ-01 17 41478266 41478266 G C ARL4D 3'UTR 0.32 TCGA-FU-A3HZ-01 17 41831135 41831135 C T SOST 3'UTR 0.33 TCGA-FU-A3HZ-01 17 41935263 41935263 G T CD300LG Intron 0.29 TCGA-FU-A3HZ-01 17 42160003 42160003 T C HDAC5 Missense_Mutation p.K854E 0.41 deleterious(0) benign(0.028) TCGA-FU-A3HZ-01 17 42171013 42171013 A G HDAC5 Missense_Mutation p.F96S 0.22 deleterious(0) probably_damaging(0.972) TCGA-FU-A3HZ-01 17 42248408 42248408 A G ASB16 Missense_Mutation p.N84S 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-FU-A3HZ-01 17 42928702 42928702 G A EFTUD2 Silent p.F953F 0.38 TCGA-FU-A3HZ-01 17 43513298 43513298 C A PLEKHM1 3'UTR 0.41 TCGA-FU-A3HZ-01 17 43922606 43922606 G T SPPL2C Missense_Mutation p.G112C 0.45 deleterious(0.02) probably_damaging(0.983) TCGA-FU-A3HZ-01 17 44103524 44103524 G T MAPT 3'UTR 0.26 TCGA-FU-A3HZ-01 17 45008503 45008503 T G GOSR2 Missense_Mutation p.F45V 0.40 tolerated(0.49) benign(0.039) TCGA-FU-A3HZ-01 17 46020749 46020749 T A PNPO Nonsense_Mutation p.C72* 0.37 TCGA-FU-A3HZ-01 17 46148121 46148121 A C CBX1 3'UTR 0.12 TCGA-FU-A3HZ-01 17 4634813 4634813 G T MED11 Missense_Mutation p.R10I 0.30 deleterious(0) possibly_damaging(0.72) TCGA-FU-A3HZ-01 17 4647739 4647739 G A ZMYND15 Missense_Mutation p.E554K 0.46 tolerated(0.18) benign(0.005) TCGA-FU-A3HZ-01 17 47014436 47014436 C T SNF8 Missense_Mutation p.E99K 0.39 deleterious(0) probably_damaging(0.962) TCGA-FU-A3HZ-01 17 47103856 47103856 G C IGF2BP1 Missense_Mutation p.G105A 0.15 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 17 48594666 48594666 C T MYCBPAP Missense_Mutation p.R116C 0.38 deleterious(0.03) benign(0.07) TCGA-FU-A3HZ-01 17 5084959 5084959 T G ZNF594 3'UTR 0.39 TCGA-FU-A3HZ-01 17 5085175 5085175 C A ZNF594 Nonsense_Mutation p.E793* 0.39 TCGA-FU-A3HZ-01 17 53120633 53120633 G T STXBP4 Nonsense_Mutation p.E298* 0.44 TCGA-FU-A3HZ-01 17 53392589 53392589 T G HLF Silent p.G151G 0.30 TCGA-FU-A3HZ-01 17 55122996 55122996 T G RNF126P1 RNA 0.61 TCGA-FU-A3HZ-01 17 55754401 55754401 C A MSI2 3'UTR 0.41 TCGA-FU-A3HZ-01 17 56082741 56082741 T G SRSF1 3'UTR 0.26 TCGA-FU-A3HZ-01 17 58234005 58234005 A C CA4 Missense_Mutation p.K66T 0.36 tolerated(0.06) benign(0.01) TCGA-FU-A3HZ-01 17 59485586 59485586 C T TBX2 Missense_Mutation p.R620C 0.29 deleterious(0) probably_damaging(0.99) TCGA-FU-A3HZ-01 17 59668212 59668212 G A NACA2 Silent p.D110D 0.30 TCGA-FU-A3HZ-01 17 59821902 59821902 A G BRIP1 Silent p.N716N 0.14 TCGA-FU-A3HZ-01 17 59934417 59934417 A C BRIP1 Splice_Site p.X127_splice 0.35 TCGA-FU-A3HZ-01 17 6018 6018 C T DOC2B Missense_Mutation p.V306M 0.29 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 17 61497408 61497408 T G TANC2 Missense_Mutation p.C1355W 0.09 deleterious(0) probably_damaging(0.965) TCGA-FU-A3HZ-01 17 61671187 61671187 T G DCAF7 3'Flank 0.10 TCGA-FU-A3HZ-01 17 61843464 61843464 A C CCDC47 Missense_Mutation p.D24E 0.45 tolerated(0.45) benign(0.001) TCGA-FU-A3HZ-01 17 61972703 61972703 G A CSH1 Intron 0.29 TCGA-FU-A3HZ-01 17 62488865 62488865 C T POLG2 Silent p.S238S 0.33 TCGA-FU-A3HZ-01 17 62892841 62892841 T C LRRC37A3 Missense_Mutation p.T179A 0.17 tolerated(0.1) benign(0.006) TCGA-FU-A3HZ-01 17 65907913 65907913 G T BPTF Missense_Mutation p.D1305Y 0.19 probably_damaging(0.976) TCGA-FU-A3HZ-01 17 6684086 6684086 G A FBXO39 Missense_Mutation p.R300Q 0.36 tolerated(0.08) probably_damaging(0.976) TCGA-FU-A3HZ-01 17 67101716 67101716 T G ABCA6 Missense_Mutation p.Y876S 0.24 tolerated(0.16) benign(0.142) TCGA-FU-A3HZ-01 17 67187321 67187321 A T ABCA10 Missense_Mutation p.F669L 0.15 deleterious(0.01) possibly_damaging(0.752) TCGA-FU-A3HZ-01 17 67310553 67310553 A G ABCA5 Missense_Mutation p.S2P 0.25 tolerated(0.17) benign(0.01) TCGA-FU-A3HZ-01 17 68128346 68128346 G T KCNJ16 Missense_Mutation p.D40Y 0.27 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 17 68172113 68172113 C T KCNJ2 Silent p.C311C 0.31 TCGA-FU-A3HZ-01 17 71192823 71192823 C T COG1 Nonsense_Mutation p.R165* 0.27 TCGA-FU-A3HZ-01 17 72283153 72283153 A C DNAI2 Missense_Mutation p.D128A 0.09 deleterious(0) probably_damaging(0.918) TCGA-FU-A3HZ-01 17 72301440 72301440 T G DNAI2 Missense_Mutation p.V357G 0.25 tolerated(0.17) benign(0.013) TCGA-FU-A3HZ-01 17 72469814 72469814 G T CD300A Missense_Mutation p.K60N 0.44 tolerated(0.1) benign(0.436) TCGA-FU-A3HZ-01 17 72539119 72539119 C T CD300C Silent p.T136T 0.65 TCGA-FU-A3HZ-01 17 73035359 73035359 G T ATP5H Missense_Mutation p.S100Y 0.39 deleterious(0.03) benign(0.003) TCGA-FU-A3HZ-01 17 7322814 7322814 T C NLGN2 3'UTR 0.24 TCGA-FU-A3HZ-01 17 73498214 73498214 C T CASKIN2 Missense_Mutation p.D981N 0.26 deleterious(0) probably_damaging(0.959) TCGA-FU-A3HZ-01 17 73620961 73620961 G A RECQL5 3'Flank 0.33 TCGA-FU-A3HZ-01 17 7363513 7363513 G A ZBTB4 3'UTR 0.38 TCGA-FU-A3HZ-01 17 7365529 7365529 G A ZBTB4 Silent p.L924L 0.41 TCGA-FU-A3HZ-01 17 7403990 7403990 G A POLR2A Silent p.S568S 0.35 TCGA-FU-A3HZ-01 17 7405230 7405230 C T POLR2A Silent p.V787V 0.39 TCGA-FU-A3HZ-01 17 74073164 74073164 G A GALR2 Silent p.A272A 0.13 TCGA-FU-A3HZ-01 17 74163187 74163187 C A RNF157 Missense_Mutation p.S155I 0.43 tolerated(0.07) benign(0.028) TCGA-FU-A3HZ-01 17 74735047 74735047 A G MFSD11 Missense_Mutation p.T42A 0.29 tolerated(0.39) benign(0.2) TCGA-FU-A3HZ-01 17 76105446 76105446 C T TNRC6C 3'Flank 0.40 TCGA-FU-A3HZ-01 17 76117120 76117120 T C TMC6 Silent p.V503V 0.17 TCGA-FU-A3HZ-01 17 76160781 76160781 C A C17orf99 Intron 0.42 TCGA-FU-A3HZ-01 17 76498340 76498340 A C DNAH17-AS1 3'UTR 0.38 TCGA-FU-A3HZ-01 17 76565556 76565556 G A DNAH17 Silent p.I366I 0.46 TCGA-FU-A3HZ-01 17 7678138 7678138 T G DNAH2 Missense_Mutation p.D1521E 0.19 probably_damaging(1) TCGA-FU-A3HZ-01 17 76886990 76886990 G T DDC8 Silent p.I532I 0.35 TCGA-FU-A3HZ-01 17 77040139 77040139 T C C1QTNF1 Missense_Mutation p.V30A 0.23 tolerated_low_confidence(0.85) benign(0.002) TCGA-FU-A3HZ-01 17 78040019 78040019 G A CCDC40 Intron 0.14 TCGA-FU-A3HZ-01 17 7807175 7807175 C A CHD3 Missense_Mutation p.H1313N 0.43 benign(0.107) TCGA-FU-A3HZ-01 17 78078694 78078694 C T GAA Silent p.C103C 0.44 TCGA-FU-A3HZ-01 17 78410731 78410731 C T ENDOV 3'UTR 0.41 TCGA-FU-A3HZ-01 17 79102290 79102290 C T AATK Missense_Mutation p.G132S 0.09 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 17 79433214 79433214 T G RP11-1055B8.7 3'UTR 0.14 TCGA-FU-A3HZ-01 17 79991391 79991391 G T RAC3 Missense_Mutation p.D122Y 0.40 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-FU-A3HZ-01 17 8194264 8194264 G A SLC25A35 Silent p.L209L 0.31 TCGA-FU-A3HZ-01 17 8272985 8272985 G T KRBA2 Missense_Mutation p.L316I 0.34 tolerated(0.36) benign(0.047) TCGA-FU-A3HZ-01 17 915136 915136 A C ABR Missense_Mutation p.I684R 0.13 deleterious(0) possibly_damaging(0.616) TCGA-FU-A3HZ-01 17 9471774 9471774 C T STX8 Missense_Mutation p.D11N 0.34 tolerated(0.06) probably_damaging(0.959) TCGA-FU-A3HZ-01 18 11876657 11876657 A C GNAL Missense_Mutation p.R400S 0.09 deleterious(0.03) probably_damaging(0.924) TCGA-FU-A3HZ-01 18 12678430 12678430 T G CEP76 Missense_Mutation p.K434T 0.33 tolerated(0.25) benign(0.004) TCGA-FU-A3HZ-01 18 13068385 13068385 C A CEP192 Missense_Mutation p.L1596I 0.47 tolerated(0.19) benign(0.168) TCGA-FU-A3HZ-01 18 13825791 13825791 C A MC5R Missense_Mutation p.F9L 0.47 tolerated(0.51) benign(0.004) TCGA-FU-A3HZ-01 18 14828278 14828278 G T ANKRD30B Missense_Mutation p.E796D 0.40 tolerated(0.51) benign(0.001) TCGA-FU-A3HZ-01 18 19996268 19996268 A G CTAGE1 Missense_Mutation p.S503P 0.40 deleterious(0.03) benign(0.017) TCGA-FU-A3HZ-01 18 21120466 21120466 G A NPC1 Silent p.I850I 0.36 TCGA-FU-A3HZ-01 18 213584 213584 A C USP14 3'UTR 0.44 TCGA-FU-A3HZ-01 18 21746657 21746657 A C OSBPL1A Missense_Mutation p.F849V 0.33 deleterious(0) probably_damaging(0.911) TCGA-FU-A3HZ-01 18 22056721 22056721 G T HRH4 Missense_Mutation p.R123I 0.14 deleterious(0) probably_damaging(0.97) TCGA-FU-A3HZ-01 18 28669412 28669412 T G DSC2 Missense_Mutation p.E207A 0.15 tolerated(0.21) benign(0.033) TCGA-FU-A3HZ-01 18 28911707 28911707 G A DSG1 Silent p.P187P 0.44 TCGA-FU-A3HZ-01 18 2891551 2891551 C T EMILIN2 Missense_Mutation p.R476W 0.55 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 18 29040886 29040886 G T DSG3 Missense_Mutation p.D259Y 0.36 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 18 29218714 29218714 G T B4GALT6 Missense_Mutation p.L161I 0.61 tolerated(0.74) benign(0.052) TCGA-FU-A3HZ-01 18 29410111 29410111 A G TRAPPC8 3'UTR 0.50 TCGA-FU-A3HZ-01 18 29429636 29429636 G T TRAPPC8 Missense_Mutation p.P1210T 0.33 tolerated(0.67) benign(0.001) TCGA-FU-A3HZ-01 18 2945673 2945673 C T LPIN2 Intron 0.46 TCGA-FU-A3HZ-01 18 29793309 29793309 T G MEP1B Missense_Mutation p.S456A 0.38 tolerated(0.1) benign(0.314) TCGA-FU-A3HZ-01 18 30254452 30254452 C A KLHL14 3'UTR 0.12 TCGA-FU-A3HZ-01 18 30254611 30254611 T G KLHL14 3'UTR 0.39 TCGA-FU-A3HZ-01 18 31250662 31250662 G T ASXL3 Missense_Mutation p.R168I 0.35 probably_damaging(0.999) TCGA-FU-A3HZ-01 18 31431491 31431491 A C NOL4 3'UTR 0.56 TCGA-FU-A3HZ-01 18 33291217 33291217 C A GALNT1 3'UTR 0.38 TCGA-FU-A3HZ-01 18 3458230 3458230 T G TGIF1 3'UTR 0.43 TCGA-FU-A3HZ-01 18 43704826 43704826 G T HAUS1 Missense_Mutation p.K235N 0.42 deleterious(0.02) probably_damaging(0.979) TCGA-FU-A3HZ-01 18 44554605 44554605 G A TCEB3C Nonsense_Mutation p.R537* 0.05 TCGA-FU-A3HZ-01 18 44634593 44634593 T G HDHD2 3'UTR 0.53 TCGA-FU-A3HZ-01 18 48446854 48446854 G A ME2 Missense_Mutation p.E255K 0.30 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 18 50832091 50832091 T G DCC Splice_Site p.X685_splice 0.55 TCGA-FU-A3HZ-01 18 51056749 51056749 C A DCC Intron 0.39 TCGA-FU-A3HZ-01 18 51809299 51809299 G T POLI Nonsense_Mutation p.E297* 0.30 TCGA-FU-A3HZ-01 18 51863617 51863617 G A STARD6 Missense_Mutation p.R49C 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-FU-A3HZ-01 18 52927229 52927229 G T TCF4 Missense_Mutation p.S442R 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-FU-A3HZ-01 18 55151019 55151019 C T ONECUT2 3'UTR 0.70 TCGA-FU-A3HZ-01 18 55158397 55158397 T G ONECUT2 3'UTR 0.40 TCGA-FU-A3HZ-01 18 55336390 55336390 T G ATP8B1 Intron 0.29 TCGA-FU-A3HZ-01 18 55362544 55362544 C A ATP8B1 Nonsense_Mutation p.E267* 0.38 TCGA-FU-A3HZ-01 18 56653278 56653278 G T ZNF532 3'UTR 0.32 TCGA-FU-A3HZ-01 18 56985653 56985653 C A CPLX4 Missense_Mutation p.K14N 0.43 deleterious(0) possibly_damaging(0.767) TCGA-FU-A3HZ-01 18 56997796 56997796 C T LMAN1 3'UTR 0.40 TCGA-FU-A3HZ-01 18 61261713 61261713 G T SERPINB13 Missense_Mutation p.E199D 0.16 tolerated(0.12) probably_damaging(0.999) TCGA-FU-A3HZ-01 18 61647066 61647066 A C SERPINB8 Missense_Mutation p.H67P 0.50 deleterious(0) probably_damaging(0.993) TCGA-FU-A3HZ-01 18 641528 641528 T G CLUL1 Missense_Mutation p.F399C 0.53 deleterious(0) probably_damaging(0.973) TCGA-FU-A3HZ-01 18 64218334 64218334 C A CDH19 Nonsense_Mutation p.E258* 0.36 TCGA-FU-A3HZ-01 18 65177717 65177717 G T DSEL 3'UTR 0.44 TCGA-FU-A3HZ-01 18 65178949 65178949 G T DSEL Missense_Mutation p.S976Y 0.42 tolerated(0.16) probably_damaging(0.946) TCGA-FU-A3HZ-01 18 65179459 65179459 G T DSEL Missense_Mutation p.S806Y 0.27 tolerated(0.61) probably_damaging(0.987) TCGA-FU-A3HZ-01 18 65182359 65182359 G A DSEL 5'UTR 0.29 TCGA-FU-A3HZ-01 18 65182699 65182699 C A DSEL 5'UTR 0.35 TCGA-FU-A3HZ-01 18 697270 697270 C T ENOSF1 Silent p.R114R 0.16 TCGA-FU-A3HZ-01 18 6980553 6980553 C A LAMA1 Nonsense_Mutation p.E1992* 0.46 TCGA-FU-A3HZ-01 18 71920596 71920596 A G CYB5A 3'UTR 0.46 TCGA-FU-A3HZ-01 18 74074245 74074245 T C ZNF516 3'UTR 0.31 TCGA-FU-A3HZ-01 18 77513768 77513768 C T CTDP1 Missense_Mutation p.A955V 0.50 deleterious(0.01) probably_damaging(1) TCGA-FU-A3HZ-01 18 77896353 77896353 A G ADNP2 Silent p.R1019R 0.39 TCGA-FU-A3HZ-01 18 77926861 77926861 C T AC139100.2 3'UTR 0.24 TCGA-FU-A3HZ-01 18 8824835 8824835 C A SOGA2 Silent p.I1109I 0.24 TCGA-FU-A3HZ-01 18 9815133 9815133 G T RAB31 Missense_Mutation p.K98N 0.29 deleterious(0.01) probably_damaging(0.936) TCGA-FU-A3HZ-01 19 10265036 10265036 T G DNMT1 Missense_Mutation p.Q651P 0.24 deleterious(0) probably_damaging(0.935) TCGA-FU-A3HZ-01 19 10398021 10398021 G A ICAM4 Silent p.A111A 0.24 TCGA-FU-A3HZ-01 19 10426678 10426678 G T FDX1L 5'UTR 0.34 TCGA-FU-A3HZ-01 19 10445073 10445073 T G ICAM3 Missense_Mutation p.I402L 0.19 tolerated(0.83) probably_damaging(0.93) TCGA-FU-A3HZ-01 19 11322514 11322514 C T DOCK6 Silent p.T1563T 0.40 TCGA-FU-A3HZ-01 19 11918686 11918686 A G ZNF491 3'UTR 0.30 TCGA-FU-A3HZ-01 19 11976915 11976915 A C ZNF439 5'UTR 0.38 TCGA-FU-A3HZ-01 19 12089292 12089292 T C ZNF763 Missense_Mutation p.S188P 0.21 tolerated(0.07) benign(0.203) TCGA-FU-A3HZ-01 19 12125837 12125837 C A ZNF433 Missense_Mutation p.E615D 0.15 deleterious(0.02) benign(0.142) TCGA-FU-A3HZ-01 19 12222913 12222913 G A ZNF788 Missense_Mutation p.R184Q 0.26 tolerated(0.62) benign(0.001) TCGA-FU-A3HZ-01 19 12223607 12223607 G T ZNF788 Missense_Mutation p.E415D 0.27 deleterious(0.02) benign(0.039) TCGA-FU-A3HZ-01 19 12542059 12542059 A G ZNF443 Silent p.Y309Y 0.48 TCGA-FU-A3HZ-01 19 12865773 12865773 C A BEST2 Missense_Mutation p.F188L 0.37 deleterious(0.02) possibly_damaging(0.656) TCGA-FU-A3HZ-01 19 13394190 13394190 T C CACNA1A Missense_Mutation p.Y1238C 0.08 benign(0.373) TCGA-FU-A3HZ-01 19 14000075 14000075 C T C19orf57 Missense_Mutation p.E532K 0.30 deleterious(0) possibly_damaging(0.801) TCGA-FU-A3HZ-01 19 1462028 1462028 G A APC2 Missense_Mutation p.A569T 0.13 possibly_damaging(0.642) TCGA-FU-A3HZ-01 19 1496287 1496287 G A REEP6 Missense_Mutation p.A118T 0.29 tolerated(0.1) benign(0.149) TCGA-FU-A3HZ-01 19 15164574 15164574 C A CASP14 Missense_Mutation p.Q70K 0.25 tolerated(0.18) benign(0.257) TCGA-FU-A3HZ-01 19 15563952 15563952 T C RASAL3 Missense_Mutation p.N879S 0.30 tolerated(0.12) benign(0.021) TCGA-FU-A3HZ-01 19 15905096 15905096 C T OR10H5 Missense_Mutation p.R80C 0.39 deleterious(0.02) benign(0.033) TCGA-FU-A3HZ-01 19 15918816 15918816 T C OR10H1 Missense_Mutation p.Q11R 0.52 deleterious(0) benign(0.009) TCGA-FU-A3HZ-01 19 16314297 16314297 G A AP1M1 Missense_Mutation p.D24N 0.45 deleterious(0.02) benign(0.179) TCGA-FU-A3HZ-01 19 16337342 16337342 C A AP1M1 Silent p.L231L 0.41 TCGA-FU-A3HZ-01 19 16861134 16861134 G T NWD1 Nonsense_Mutation p.E561* 0.55 TCGA-FU-A3HZ-01 19 16977349 16977349 C T SIN3B Silent p.I628I 0.50 TCGA-FU-A3HZ-01 19 17338694 17338694 C T OCEL1 Silent p.V166V 0.35 TCGA-FU-A3HZ-01 19 17441687 17441687 T C ANO8 Missense_Mutation p.T315A 0.26 deleterious(0) probably_damaging(0.994) TCGA-FU-A3HZ-01 19 17599875 17599875 G T SLC27A1 Missense_Mutation p.K315N 0.25 deleterious(0) benign(0.411) TCGA-FU-A3HZ-01 19 17919003 17919003 G A B3GNT3 Silent p.T129T 0.44 TCGA-FU-A3HZ-01 19 1807260 1807260 A G ATP8B3 Silent p.I174I 0.25 TCGA-FU-A3HZ-01 19 18380275 18380275 C T KIAA1683 Splice_Site p.X5_splice 0.52 TCGA-FU-A3HZ-01 19 19136044 19136044 A C SUGP2 Missense_Mutation p.C371W 0.45 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 19 19468393 19468393 T G MAU2 3'UTR 0.31 TCGA-FU-A3HZ-01 19 19745468 19745468 G T GMIP Silent p.I644I 0.12 TCGA-FU-A3HZ-01 19 1980466 1980466 A C CSNK1G2 3'UTR 0.29 TCGA-FU-A3HZ-01 19 20002715 20002715 G T ZNF253 Missense_Mutation p.R220I 0.29 tolerated(0.43) benign(0.045) TCGA-FU-A3HZ-01 19 20003623 20003623 T G ZNF253 3'UTR 0.60 TCGA-FU-A3HZ-01 19 20228640 20228640 G T ZNF90 Missense_Mutation p.D93Y 0.39 deleterious(0.05) probably_damaging(0.976) TCGA-FU-A3HZ-01 19 2039714 2039717 GCGT - MKNK2 Frame_Shift_Del p.R432Afs*51 0.36 TCGA-FU-A3HZ-01 19 22574445 22574445 G T ZNF98 Missense_Mutation p.S531Y 0.32 deleterious(0.01) possibly_damaging(0.462) TCGA-FU-A3HZ-01 19 22848074 22848074 T C ZNF492 3'UTR 0.55 TCGA-FU-A3HZ-01 19 22942310 22942310 T C ZNF99 Missense_Mutation p.N134S 0.51 tolerated(0.17) possibly_damaging(0.69) TCGA-FU-A3HZ-01 19 23835968 23835968 T G ZNF675 3'UTR 0.42 TCGA-FU-A3HZ-01 19 23837076 23837076 C A ZNF675 Missense_Mutation p.R220I 0.44 tolerated(0.39) benign(0.001) TCGA-FU-A3HZ-01 19 2430812 2430812 C A LMNB2 3'UTR 0.50 TCGA-FU-A3HZ-01 19 2934814 2934814 C T ZNF77 Splice_Site p.X104_splice 0.37 TCGA-FU-A3HZ-01 19 30935924 30935924 G T ZNF536 Missense_Mutation p.K485N 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-FU-A3HZ-01 19 32873985 32873985 A T ZNF507 Missense_Mutation p.N953I 0.39 deleterious_low_confidence(0) benign(0.03) TCGA-FU-A3HZ-01 19 32974975 32974975 G T DPY19L3 3'UTR 0.50 TCGA-FU-A3HZ-01 19 32975193 32975193 C A DPY19L3 3'UTR 0.55 TCGA-FU-A3HZ-01 19 33470790 33470790 G T RHPN2 3'UTR 0.25 TCGA-FU-A3HZ-01 19 33617532 33617532 A C GPATCH1 Missense_Mutation p.Q886H 0.38 tolerated_low_confidence(0.72) unknown(0) TCGA-FU-A3HZ-01 19 35523455 35523455 G A SCN1B Missense_Mutation p.V22M 0.50 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 19 35823807 35823807 G A CD22 Missense_Mutation p.R131Q 0.59 tolerated(0.37) benign(0.048) TCGA-FU-A3HZ-01 19 3591120 3591120 G T GIPC3 3'UTR 0.32 TCGA-FU-A3HZ-01 19 3591756 3591756 G A GIPC3 3'UTR 0.47 TCGA-FU-A3HZ-01 19 3592379 3592379 G T GIPC3 3'UTR 0.33 TCGA-FU-A3HZ-01 19 36037436 36037436 C A TMEM147 Missense_Mutation p.F52L 0.11 tolerated(0.68) benign(0.065) TCGA-FU-A3HZ-01 19 36164350 36164350 A C UPK1A Missense_Mutation p.N124T 0.22 tolerated(0.11) benign(0.026) TCGA-FU-A3HZ-01 19 36365650 36365650 G A APLP1 Missense_Mutation p.R408H 0.50 tolerated(0.32) benign(0.009) TCGA-FU-A3HZ-01 19 36508779 36508779 C T CLIP3 Missense_Mutation p.R433H 0.57 deleterious(0.02) benign(0.101) TCGA-FU-A3HZ-01 19 36728647 36728647 G T ZNF146 3'UTR 0.50 TCGA-FU-A3HZ-01 19 36858837 36858837 C A ZFP14 5'UTR 0.42 TCGA-FU-A3HZ-01 19 37368187 37368187 G T ZNF345 Missense_Mutation p.G152V 0.16 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 19 3747907 3747907 G A TJP3 Missense_Mutation p.G822D 0.10 deleterious(0.01) probably_damaging(1) TCGA-FU-A3HZ-01 19 375903 375903 C A THEG Missense_Mutation p.R23M 0.31 tolerated_low_confidence(0.09) benign(0.022) TCGA-FU-A3HZ-01 19 37619728 37619728 A G ZNF420 Missense_Mutation p.E612G 0.25 deleterious(0.01) possibly_damaging(0.758) TCGA-FU-A3HZ-01 19 37676174 37676174 G A ZNF585B Silent p.F755F 0.11 TCGA-FU-A3HZ-01 19 37974926 37974926 T G ZNF570 Nonsense_Mutation p.Y134* 0.44 TCGA-FU-A3HZ-01 19 38377309 38377309 C A WDR87 Missense_Mutation p.K2295N 0.62 unknown(0) TCGA-FU-A3HZ-01 19 38380396 38380396 G A WDR87 Silent p.N1266N 0.25 TCGA-FU-A3HZ-01 19 38610312 38610312 C T SIPA1L3 Silent p.I886I 0.38 TCGA-FU-A3HZ-01 19 39327130 39327130 T G HNRNPL 3'UTR 0.31 TCGA-FU-A3HZ-01 19 39899088 39899088 G T ZFP36 Missense_Mutation p.D250Y 0.12 deleterious(0.03) possibly_damaging(0.865) TCGA-FU-A3HZ-01 19 40006584 40006584 G T SELV Missense_Mutation p.Q244H 0.37 tolerated(0.15) benign(0.128) TCGA-FU-A3HZ-01 19 40433110 40433110 G T FCGBP Missense_Mutation p.P387T 0.50 benign(0.344) TCGA-FU-A3HZ-01 19 40900087 40900087 C T PRX Missense_Mutation p.R1391Q 0.12 tolerated(0.16) benign(0.006) TCGA-FU-A3HZ-01 19 41745213 41745213 C T AXL Missense_Mutation p.R427C 0.41 tolerated(0.06) benign(0.302) TCGA-FU-A3HZ-01 19 41765754 41765754 C A AXL Missense_Mutation p.A877D 0.28 tolerated(0.56) benign(0.04) TCGA-FU-A3HZ-01 19 42818970 42818970 C T TMEM145 Silent p.Y129Y 0.33 TCGA-FU-A3HZ-01 19 42873722 42873722 C T MEGF8 Silent p.C2160C 0.36 TCGA-FU-A3HZ-01 19 42930555 42930555 C T LIPE Silent p.T249T 0.41 TCGA-FU-A3HZ-01 19 43093752 43093752 A C CEACAM8 Missense_Mutation p.V187G 0.06 tolerated(0.38) benign(0.26) TCGA-FU-A3HZ-01 19 4363381 4363383 CTC - SH3GL1 In_Frame_Del p.E238del 0.33 TCGA-FU-A3HZ-01 19 43697239 43697239 G C PSG4 3'UTR 0.40 TCGA-FU-A3HZ-01 19 4405955 4405955 A G CHAF1A Missense_Mutation p.I33M 0.18 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 19 44271800 44271800 C A KCNN4 Missense_Mutation p.E393D 0.40 tolerated(0.07) probably_damaging(0.996) TCGA-FU-A3HZ-01 19 44352021 44352021 G T ZNF283 Missense_Mutation p.R423I 0.26 deleterious(0.02) probably_damaging(0.939) TCGA-FU-A3HZ-01 19 44352726 44352726 A G ZNF283 Missense_Mutation p.E658G 0.26 deleterious(0.02) benign(0.004) TCGA-FU-A3HZ-01 19 44376675 44376675 A G ZNF404 3'UTR 0.35 TCGA-FU-A3HZ-01 19 44376971 44376971 T G ZNF404 Missense_Mutation p.K465N 0.29 deleterious(0) possibly_damaging(0.745) TCGA-FU-A3HZ-01 19 44933581 44933581 T G ZNF229 Missense_Mutation p.K459Q 0.38 deleterious(0.03) benign(0.376) TCGA-FU-A3HZ-01 19 44934110 44934110 C T ZNF229 Silent p.P282P 0.42 TCGA-FU-A3HZ-01 19 44981496 44981496 C A ZNF180 Missense_Mutation p.R401I 0.52 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 19 45506232 45506232 G A RELB Silent p.S44S 0.33 TCGA-FU-A3HZ-01 19 46216665 46216665 G A FBXO46 Missense_Mutation p.A30V 0.34 tolerated_low_confidence(0.09) benign(0.008) TCGA-FU-A3HZ-01 19 46850429 46850429 A G PPP5C Missense_Mutation p.K26E 0.53 tolerated(1) benign(0) TCGA-FU-A3HZ-01 19 46916263 46916263 C A CCDC8 5'UTR 0.24 TCGA-FU-A3HZ-01 19 48043494 48043494 C T ZNF541 Missense_Mutation p.S854N 0.41 tolerated(0.63) benign(0.005) TCGA-FU-A3HZ-01 19 48245898 48245898 C A EHD2 3'UTR 0.54 TCGA-FU-A3HZ-01 19 49254472 49254472 A C FUT1 Missense_Mutation p.F23V 0.46 tolerated_low_confidence(0.9) benign(0.26) TCGA-FU-A3HZ-01 19 49438278 49438278 G A DHDH Missense_Mutation p.D38N 0.10 tolerated(0.25) possibly_damaging(0.685) TCGA-FU-A3HZ-01 19 49468795 49468795 A G FTL Missense_Mutation p.T11A 0.36 tolerated(0.5) benign(0.001) TCGA-FU-A3HZ-01 19 49989231 49989231 A C FLT3LG 3'UTR 0.56 TCGA-FU-A3HZ-01 19 50086923 50086923 G T PRRG2 Missense_Mutation p.E70D 0.54 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 19 50412967 50412967 G T NUP62 Missense_Mutation p.S33Y 0.47 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 19 50453275 50453275 G A SIGLEC11 Silent p.G683G 0.28 TCGA-FU-A3HZ-01 19 50881478 50881478 A C NR1H2 Missense_Mutation p.E85A 0.18 deleterious(0) probably_damaging(0.995) TCGA-FU-A3HZ-01 19 51501139 51501139 C A KLK8 Missense_Mutation p.E210D 0.38 tolerated(0.6) benign(0.026) TCGA-FU-A3HZ-01 19 51517985 51517985 A G KLK10 3'UTR 0.58 TCGA-FU-A3HZ-01 19 51955556 51955556 T G SIGLEC8 3'UTR 0.47 TCGA-FU-A3HZ-01 19 51958774 51958774 G A SIGLEC8 Nonsense_Mutation p.R317* 0.18 TCGA-FU-A3HZ-01 19 51994863 51994863 G A SIGLEC12 3'UTR 0.32 TCGA-FU-A3HZ-01 19 52394040 52394040 C A ZNF649 Missense_Mutation p.R450I 0.31 deleterious(0.04) benign(0.392) TCGA-FU-A3HZ-01 19 52869563 52869563 C A ZNF610 Missense_Mutation p.T311N 0.36 deleterious(0.02) possibly_damaging(0.668) TCGA-FU-A3HZ-01 19 52869638 52869638 G T ZNF610 Missense_Mutation p.R336I 0.44 tolerated(0.07) possibly_damaging(0.551) TCGA-FU-A3HZ-01 19 52887236 52887236 G A ZNF880 Missense_Mutation p.E135K 0.33 tolerated(0.08) benign(0.386) TCGA-FU-A3HZ-01 19 52888452 52888452 G T ZNF880 Missense_Mutation p.R540I 0.40 deleterious(0.03) benign(0.315) TCGA-FU-A3HZ-01 19 53302044 53302044 C A ZNF28 3'UTR 0.38 TCGA-FU-A3HZ-01 19 53453422 53453422 G T ZNF816 Missense_Mutation p.P536T 0.26 deleterious(0.01) possibly_damaging(0.739) TCGA-FU-A3HZ-01 19 53453865 53453865 T C ZNF816 Missense_Mutation p.H388R 0.16 tolerated(0.39) benign(0.006) TCGA-FU-A3HZ-01 19 53473006 53473006 A G ZNF702P RNA 0.08 TCGA-FU-A3HZ-01 19 53473542 53473542 C A ZNF702P RNA 0.39 TCGA-FU-A3HZ-01 19 53473857 53473857 A C ZNF702P RNA 0.13 TCGA-FU-A3HZ-01 19 53611640 53611640 T G ZNF415 Missense_Mutation p.K553T 0.21 deleterious(0) benign(0.025) TCGA-FU-A3HZ-01 19 53619657 53619657 G T ZNF415 Missense_Mutation p.F15L 0.15 deleterious(0) possibly_damaging(0.682) TCGA-FU-A3HZ-01 19 53652026 53652026 A G ZNF347 Missense_Mutation p.L61S 0.52 deleterious(0) benign(0.071) TCGA-FU-A3HZ-01 19 53884683 53884683 C A ZNF525 Nonsense_Mutation p.S284* 0.18 TCGA-FU-A3HZ-01 19 54080602 54080602 G T ZNF331 Missense_Mutation p.R263I 0.39 tolerated(0.06) probably_damaging(0.998) TCGA-FU-A3HZ-01 19 54137881 54137881 A C DPRX Missense_Mutation p.N42T 0.26 tolerated(0.54) benign(0.038) TCGA-FU-A3HZ-01 19 54667392 54667392 C T TMC4 Intron 0.38 TCGA-FU-A3HZ-01 19 54677312 54677312 T G MBOAT7 3'UTR 0.33 TCGA-FU-A3HZ-01 19 54782391 54782391 G A LILRB2 Silent p.I327I 0.47 TCGA-FU-A3HZ-01 19 54783268 54783268 T C LILRB2 Missense_Mutation p.Y197C 0.42 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 19 55085931 55085931 G T LILRA2 Missense_Mutation p.K78N 0.31 tolerated(1) possibly_damaging(0.835) TCGA-FU-A3HZ-01 19 55175910 55175910 G A LILRB4 Missense_Mutation p.S210N 0.38 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 19 55670302 55670302 C T DNAAF3 3'UTR 0.50 TCGA-FU-A3HZ-01 19 55713513 55713513 C A PTPRH Missense_Mutation p.R355I 0.45 benign(0.425) TCGA-FU-A3HZ-01 19 56029462 56029462 G T SSC5D Silent p.T1273T 0.16 TCGA-FU-A3HZ-01 19 56220385 56220385 C A NLRP9 Nonsense_Mutation p.E957* 0.50 TCGA-FU-A3HZ-01 19 56235489 56235489 T C NLRP9 Silent p.G672G 0.38 TCGA-FU-A3HZ-01 19 56382190 56382190 T C NLRP4 Intron 0.08 TCGA-FU-A3HZ-01 19 56382215 56382215 G A NLRP4 Missense_Mutation p.E793K 0.12 tolerated(0.22) benign(0.029) TCGA-FU-A3HZ-01 19 56382313 56382313 A C NLRP4 Missense_Mutation p.K825N 0.26 tolerated(0.14) benign(0.023) TCGA-FU-A3HZ-01 19 56538691 56538691 C T NLRP5 Silent p.F364F 0.24 TCGA-FU-A3HZ-01 19 56888473 56888473 G T AC006116.24 RNA 0.43 TCGA-FU-A3HZ-01 19 56935058 56935058 G T ZNF583 Missense_Mutation p.R344I 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-FU-A3HZ-01 19 57066329 57066329 C A ZFP28 Silent p.G725G 0.31 TCGA-FU-A3HZ-01 19 57134767 57134767 G A ZNF71 3'UTR 0.45 TCGA-FU-A3HZ-01 19 57869030 57869030 G A ZNF304 Missense_Mutation p.R598H 0.68 tolerated(0.29) probably_damaging(1) TCGA-FU-A3HZ-01 19 57955457 57955457 T C ZNF749 Missense_Mutation p.V314A 0.36 tolerated(0.2) benign(0.001) TCGA-FU-A3HZ-01 19 58048626 58048626 C T ZNF549 Missense_Mutation p.A85V 0.45 tolerated(1) benign(0) TCGA-FU-A3HZ-01 19 58384949 58384949 A T ZNF814 Silent p.P603P 0.41 TCGA-FU-A3HZ-01 19 58420963 58420963 A C ZNF417 Missense_Mutation p.I228S 0.29 tolerated(0.11) benign(0.004) TCGA-FU-A3HZ-01 19 58453782 58453782 A G ZNF256 Missense_Mutation p.Y132H 0.30 deleterious(0.04) benign(0.007) TCGA-FU-A3HZ-01 19 58579583 58579583 G A ZNF135 Silent p.P601P 0.61 TCGA-FU-A3HZ-01 19 58640843 58640843 A C ZNF329 Missense_Mutation p.F10V 0.54 tolerated(0.34) benign(0) TCGA-FU-A3HZ-01 19 6156561 6156561 C T ACSBG2 Missense_Mutation p.S169L 0.33 tolerated(0.1) benign(0.08) TCGA-FU-A3HZ-01 19 6387491 6387491 C T GTF2F1 Missense_Mutation p.E136K 0.08 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 19 7128913 7128913 G T INSR Silent p.V965V 0.27 TCGA-FU-A3HZ-01 19 8203066 8203066 G A FBN3 Missense_Mutation p.A387V 0.30 tolerated(0.5) benign(0.001) TCGA-FU-A3HZ-01 19 8586189 8586189 A C MYO1F 3'UTR 0.36 TCGA-FU-A3HZ-01 19 8645127 8645127 G A ADAMTS10 3'UTR 0.27 TCGA-FU-A3HZ-01 19 8670176 8670176 T C ADAMTS10 Silent p.A52A 0.15 TCGA-FU-A3HZ-01 19 9054317 9054317 T G MUC16 Missense_Mutation p.K10435N 0.06 benign(0.092) TCGA-FU-A3HZ-01 19 9064235 9064235 T A MUC16 Missense_Mutation p.E7737D 0.29 unknown(0) TCGA-FU-A3HZ-01 19 9070320 9070320 G T MUC16 Missense_Mutation p.A5709D 0.44 unknown(0) TCGA-FU-A3HZ-01 19 9071780 9071780 G T MUC16 Silent p.V5222V 0.36 TCGA-FU-A3HZ-01 19 9237587 9237587 G T OR7G3 Missense_Mutation p.L14I 0.47 deleterious(0) benign(0.211) TCGA-FU-A3HZ-01 19 9296840 9296840 A C OR7D2 Missense_Mutation p.H128P 0.25 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-FU-A3HZ-01 19 9406915 9406915 T C ZNF699 Missense_Mutation p.K389E 0.31 deleterious(0.02) benign(0.06) TCGA-FU-A3HZ-01 19 9577552 9577552 T G ZNF560 Missense_Mutation p.N691H 0.44 deleterious(0) benign(0.012) TCGA-FU-A3HZ-01 19 9676775 9676775 T G ZNF121 Missense_Mutation p.K338N 0.30 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 19 9721199 9721199 G T ZNF561 Missense_Mutation p.L380I 0.25 deleterious(0.01) probably_damaging(0.944) TCGA-FU-A3HZ-01 19 9800869 9800869 C A ZNF812 Missense_Mutation p.R437I 0.36 deleterious(0) possibly_damaging(0.908) TCGA-FU-A3HZ-01 1 100626100 100626100 T C LRRC39 Silent p.V47V 0.16 TCGA-FU-A3HZ-01 1 10327452 10327452 A C KIF1B Missense_Mutation p.E148D 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-FU-A3HZ-01 1 103352442 103352442 C A COL11A1 Missense_Mutation p.M1593I 0.34 unknown(0) TCGA-FU-A3HZ-01 1 104160634 104160634 G T AMY2A Missense_Mutation p.R76I 0.38 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 10460491 10460491 C A PGD Missense_Mutation p.F42L 0.26 deleterious(0.03) probably_damaging(1) TCGA-FU-A3HZ-01 1 109391560 109391560 C A AKNAD1 Nonsense_Mutation p.E386* 0.29 TCGA-FU-A3HZ-01 1 109869778 109869778 G A SORT1 Silent p.S493S 0.24 TCGA-FU-A3HZ-01 1 110295775 110295775 G T EPS8L3 Missense_Mutation p.F389L 0.48 tolerated(0.05) possibly_damaging(0.527) TCGA-FU-A3HZ-01 1 110889277 110889277 T C RBM15 3'UTR 0.44 TCGA-FU-A3HZ-01 1 110998970 110998970 T G PROK1 Missense_Mutation p.F105L 0.08 tolerated_low_confidence(0.28) benign(0.005) TCGA-FU-A3HZ-01 1 111060775 111060775 G A KCNA10 Missense_Mutation p.S212F 0.31 deleterious(0) probably_damaging(0.93) TCGA-FU-A3HZ-01 1 11184573 11184573 G T MTOR Missense_Mutation p.S2215Y 0.37 deleterious(0) possibly_damaging(0.77) TCGA-FU-A3HZ-01 1 111893946 111893946 T G PIFO Missense_Mutation p.N191K 0.49 deleterious(0.02) possibly_damaging(0.49) TCGA-FU-A3HZ-01 1 112247085 112247085 A G RAP1A Missense_Mutation p.K149E 0.27 deleterious(0) possibly_damaging(0.776) TCGA-FU-A3HZ-01 1 112305420 112305420 A C DDX20 Intron 0.51 TCGA-FU-A3HZ-01 1 113217660 113217660 C A MOV10 Missense_Mutation p.D42E 0.30 tolerated(1) benign(0) TCGA-FU-A3HZ-01 1 113667099 113667099 C T LRIG2 3'UTR 0.39 TCGA-FU-A3HZ-01 1 114128120 114128120 G A MAGI3 Missense_Mutation p.R222Q 0.39 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 114633867 114633867 G T SYT6 3'UTR 0.38 TCGA-FU-A3HZ-01 1 11561252 11561252 T C PTCHD2 Missense_Mutation p.F68S 0.45 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-FU-A3HZ-01 1 117620614 117620614 T C TTF2 Silent p.L550L 0.28 TCGA-FU-A3HZ-01 1 118167928 118167928 G T FAM46C 3'UTR 0.35 TCGA-FU-A3HZ-01 1 11867239 11867239 G T CLCN6 Missense_Mutation p.D47Y 0.34 deleterious(0.01) possibly_damaging(0.642) TCGA-FU-A3HZ-01 1 120502047 120502047 C T NOTCH2 Missense_Mutation p.R665H 0.36 tolerated(0.16) benign(0.051) TCGA-FU-A3HZ-01 1 12267024 12267024 G A TNFRSF1B Missense_Mutation p.E445K 0.33 deleterious(0.03) possibly_damaging(0.652) TCGA-FU-A3HZ-01 1 143912297 143912297 G A FAM72D 5'UTR 0.13 TCGA-FU-A3HZ-01 1 145442122 145442122 T G TXNIP 3'UTR 0.50 TCGA-FU-A3HZ-01 1 145442568 145442568 A G TXNIP 3'UTR 0.30 TCGA-FU-A3HZ-01 1 146680530 146680530 A G FMO5 Silent p.S238S 0.40 TCGA-FU-A3HZ-01 1 146756159 146756159 G A CHD1L Missense_Mutation p.R614Q 0.39 deleterious(0.01) probably_damaging(0.971) TCGA-FU-A3HZ-01 1 1499997 1499997 C T SSU72 Intron 0.12 TCGA-FU-A3HZ-01 1 151271406 151271406 G A PI4KB Silent p.L643L 0.10 TCGA-FU-A3HZ-01 1 151315475 151315475 G T RFX5 Silent p.V346V 0.37 TCGA-FU-A3HZ-01 1 151665923 151665923 C T SNX27 Silent p.F514F 0.42 TCGA-FU-A3HZ-01 1 152081445 152081445 G T TCHH Missense_Mutation p.F1416L 0.43 unknown(0) TCGA-FU-A3HZ-01 1 152326402 152326402 C T FLG2 Missense_Mutation p.R1287K 0.36 benign(0.001) TCGA-FU-A3HZ-01 1 152328935 152328935 C T FLG2 Missense_Mutation p.E443K 0.29 unknown(0) TCGA-FU-A3HZ-01 1 152552063 152552063 G T LCE3D 3'UTR 0.28 TCGA-FU-A3HZ-01 1 152760764 152760764 C A LCE1E 3'UTR 0.35 TCGA-FU-A3HZ-01 1 152770355 152770355 T C LCE1D Missense_Mutation p.C29R 0.34 unknown(0) TCGA-FU-A3HZ-01 1 153737475 153737475 C A INTS3 Missense_Mutation p.L676I 0.27 deleterious(0.02) benign(0.164) TCGA-FU-A3HZ-01 1 154221753 154221753 A C UBAP2L Missense_Mutation p.E351D 0.54 tolerated(0.48) unknown(0) TCGA-FU-A3HZ-01 1 154296309 154296309 G A AQP10 Intron 0.22 TCGA-FU-A3HZ-01 1 154319136 154319136 T A ATP8B2 Missense_Mutation p.F1055Y 0.41 deleterious(0.03) benign(0.438) TCGA-FU-A3HZ-01 1 154459064 154459064 C T SHE Missense_Mutation p.A374T 0.40 tolerated(0.44) benign(0.001) TCGA-FU-A3HZ-01 1 154524250 154524250 T C UBE2Q1 Silent p.K357K 0.28 TCGA-FU-A3HZ-01 1 154527963 154527963 A C UBE2Q1 Missense_Mutation p.Y160D 0.12 deleterious(0) probably_damaging(0.918) TCGA-FU-A3HZ-01 1 154996951 154996951 C T DCST2 Missense_Mutation p.S580N 0.47 tolerated(0.38) benign(0.003) TCGA-FU-A3HZ-01 1 155330125 155330125 A C ASH1L Missense_Mutation p.D2254E 0.48 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-FU-A3HZ-01 1 155408777 155408777 T G ASH1L Missense_Mutation p.Q1723H 0.31 tolerated_low_confidence(0.12) benign(0.005) TCGA-FU-A3HZ-01 1 155491127 155491127 T C ASH1L Missense_Mutation p.K62E 0.16 tolerated_low_confidence(0.08) benign(0.005) TCGA-FU-A3HZ-01 1 156177734 156177734 C T SLC25A44 Missense_Mutation p.S228L 0.45 deleterious(0) benign(0.138) TCGA-FU-A3HZ-01 1 156377735 156377735 G A C1orf61 Silent p.S68S 0.42 TCGA-FU-A3HZ-01 1 156533432 156533432 C T IQGAP3 Missense_Mutation p.E178K 0.34 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 1 15687066 15687066 G T FHAD1 Missense_Mutation p.E156D 0.36 deleterious(0) possibly_damaging(0.633) TCGA-FU-A3HZ-01 1 158622383 158622383 A G SPTA1 Silent p.N1083N 0.33 TCGA-FU-A3HZ-01 1 159021793 159021793 G T IFI16 Nonsense_Mutation p.G608* 0.53 TCGA-FU-A3HZ-01 1 159174725 159174725 C T DARC 5'Flank 0.42 TCGA-FU-A3HZ-01 1 159277591 159277591 C A FCER1A Missense_Mutation p.L215M 0.09 deleterious(0.04) possibly_damaging(0.751) TCGA-FU-A3HZ-01 1 160398159 160398159 C A VANGL2 3'UTR 0.35 TCGA-FU-A3HZ-01 1 161160810 161160810 C A ADAMTS4 3'UTR 0.27 TCGA-FU-A3HZ-01 1 161180448 161180448 G A NDUFS2 Missense_Mutation p.D312N 0.24 tolerated(0.08) benign(0.12) TCGA-FU-A3HZ-01 1 161487972 161487972 G T FCGR2A 3'UTR 0.28 TCGA-FU-A3HZ-01 1 161496563 161496564 - A HSPA6 3'UTR 0.29 TCGA-FU-A3HZ-01 1 161512655 161512655 A C FCGR3A 3'UTR 0.23 TCGA-FU-A3HZ-01 1 161721742 161721742 A G DUSP12 Missense_Mutation p.Y182C 0.36 deleterious(0) probably_damaging(0.987) TCGA-FU-A3HZ-01 1 162337585 162337585 C T NOS1AP 3'UTR 0.25 TCGA-FU-A3HZ-01 1 16245496 16245496 A C SPEN Missense_Mutation p.K491Q 0.36 probably_damaging(0.999) TCGA-FU-A3HZ-01 1 163044242 163044242 G T RGS4 Missense_Mutation p.K267N 0.39 deleterious(0) probably_damaging(0.995) TCGA-FU-A3HZ-01 1 163045609 163045609 A C RGS4 3'UTR 0.40 TCGA-FU-A3HZ-01 1 163318778 163318778 C T NUF2 Nonsense_Mutation p.R390* 0.26 TCGA-FU-A3HZ-01 1 167511499 167511499 A C CREG1 3'UTR 0.35 TCGA-FU-A3HZ-01 1 167666419 167666419 T C RCSD1 Silent p.D186D 0.63 TCGA-FU-A3HZ-01 1 167829121 167829121 G T ADCY10 Missense_Mutation p.S607Y 0.26 deleterious(0) probably_damaging(0.977) TCGA-FU-A3HZ-01 1 168549377 168549377 G T XCL1 Missense_Mutation p.K46N 0.13 deleterious(0.02) probably_damaging(0.975) TCGA-FU-A3HZ-01 1 169394090 169394090 A C CCDC181 Missense_Mutation p.L26V 0.37 deleterious(0) probably_damaging(0.97) TCGA-FU-A3HZ-01 1 169484809 169484809 G A F5 Missense_Mutation p.T2134M 0.30 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 169511810 169511810 G T F5 Missense_Mutation p.L840I 0.33 deleterious(0.05) benign(0.386) TCGA-FU-A3HZ-01 1 169512260 169512260 C A F5 Nonsense_Mutation p.E690* 0.25 TCGA-FU-A3HZ-01 1 169578921 169578921 G A SELP Missense_Mutation p.S385L 0.54 deleterious(0.02) benign(0.036) TCGA-FU-A3HZ-01 1 169951900 169951900 C T KIFAP3 Missense_Mutation p.E539K 0.25 tolerated(0.16) benign(0.328) TCGA-FU-A3HZ-01 1 169993693 169993693 C T KIFAP3 Missense_Mutation p.E296K 0.36 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 170043578 170043578 T G KIFAP3 Silent p.R11R 0.07 TCGA-FU-A3HZ-01 1 170136918 170136918 G A METTL11B 3'UTR 0.26 TCGA-FU-A3HZ-01 1 170707183 170707183 C A PRRX1 3'UTR 0.14 TCGA-FU-A3HZ-01 1 171673459 171673459 G T VAMP4 3'UTR 0.31 TCGA-FU-A3HZ-01 1 172376984 172376984 G A DNM3 3'UTR 0.38 TCGA-FU-A3HZ-01 1 173506145 173506145 G T SLC9C2 Missense_Mutation p.L531I 0.27 tolerated(0.07) benign(0.308) TCGA-FU-A3HZ-01 1 173517585 173517585 A C SLC9C2 Missense_Mutation p.I468M 0.29 tolerated(0.17) benign(0.062) TCGA-FU-A3HZ-01 1 173854952 173854952 T C ZBTB37 Missense_Mutation p.F401S 0.30 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 1 175046842 175046842 G A TNN Silent p.Q96Q 0.47 TCGA-FU-A3HZ-01 1 175063328 175063328 C A TNN Silent p.V509V 0.47 TCGA-FU-A3HZ-01 1 176564676 176564676 G A PAPPA2 Missense_Mutation p.D646N 0.43 tolerated(0.37) possibly_damaging(0.557) TCGA-FU-A3HZ-01 1 176680980 176680980 T C PAPPA2 Missense_Mutation p.S1221P 0.11 tolerated(0.1) benign(0.004) TCGA-FU-A3HZ-01 1 177250956 177250956 A C BRINP2 3'UTR 0.26 TCGA-FU-A3HZ-01 1 17734207 17734207 G T RCC2 3'UTR 0.59 TCGA-FU-A3HZ-01 1 178061994 178061994 A C RASAL2 5'Flank 0.64 TCGA-FU-A3HZ-01 1 178485789 178485789 G A TEX35 Missense_Mutation p.E86K 0.31 deleterious(0.02) probably_damaging(0.956) TCGA-FU-A3HZ-01 1 178490175 178490175 C A TEX35 Intron 0.42 TCGA-FU-A3HZ-01 1 178490433 178490433 G A TEX35 Intron 0.31 TCGA-FU-A3HZ-01 1 178753625 178753625 G A RALGPS2 Missense_Mutation p.D44N 0.52 tolerated(0.06) benign(0.164) TCGA-FU-A3HZ-01 1 178875917 178875917 C T RALGPS2 Missense_Mutation p.S546L 0.44 deleterious(0.03) benign(0.012) TCGA-FU-A3HZ-01 1 179323161 179323161 G T SOAT1 3'UTR 0.50 TCGA-FU-A3HZ-01 1 179562912 179562912 G A TDRD5 Missense_Mutation p.D184N 0.19 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 179833837 179833837 G T TOR1AIP2 Intron 0.60 TCGA-FU-A3HZ-01 1 180081971 180081971 C A CEP350 3'UTR 0.11 TCGA-FU-A3HZ-01 1 180158779 180158779 C A QSOX1 Missense_Mutation p.F370L 0.50 tolerated(0.67) benign(0.004) TCGA-FU-A3HZ-01 1 18153014 18153014 A G ACTL8 Nonstop_Mutation p.*367Wext*30 0.09 TCGA-FU-A3HZ-01 1 182025669 182025669 G A ZNF648 Missense_Mutation p.R493W 0.44 deleterious(0.02) probably_damaging(0.989) TCGA-FU-A3HZ-01 1 182567782 182567782 T G RGS16 3'UTR 0.24 TCGA-FU-A3HZ-01 1 182827939 182827939 A C DHX9 Missense_Mutation p.Q324H 0.57 tolerated(0.24) benign(0.01) TCGA-FU-A3HZ-01 1 183212905 183212905 G A LAMC2 3'UTR 0.18 TCGA-FU-A3HZ-01 1 183518411 183518411 C A SMG7 Missense_Mutation p.F941L 0.34 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-FU-A3HZ-01 1 183895267 183895268 - T RGL1 Frame_Shift_Ins p.Y753Lfs*10 0.30 TCGA-FU-A3HZ-01 1 184023932 184023932 G T TSEN15 Missense_Mutation p.E96D 0.34 deleterious(0.04) probably_damaging(0.977) TCGA-FU-A3HZ-01 1 184662609 184662609 A C EDEM3 3'UTR 0.62 TCGA-FU-A3HZ-01 1 185939558 185939558 C T HMCN1 Silent p.G768G 0.33 TCGA-FU-A3HZ-01 1 186648219 186648219 C T PTGS2 Missense_Mutation p.R95Q 0.50 tolerated(0.11) benign(0.018) TCGA-FU-A3HZ-01 1 186880397 186880397 G A PLA2G4A Missense_Mutation p.R145Q 0.35 deleterious(0.01) benign(0.256) TCGA-FU-A3HZ-01 1 186915853 186915853 T G PLA2G4A Missense_Mutation p.F373C 0.35 deleterious(0) probably_damaging(0.949) TCGA-FU-A3HZ-01 1 192778294 192778294 A C RGS2 Missense_Mutation p.E31D 0.23 tolerated(0.45) benign(0.002) TCGA-FU-A3HZ-01 1 193038567 193038567 T G TROVE2 Missense_Mutation p.F128C 0.08 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 193054185 193054185 T C TROVE2 3'UTR 0.42 TCGA-FU-A3HZ-01 1 1956825 1956825 C A GABRD Silent p.I78I 0.40 TCGA-FU-A3HZ-01 1 196876118 196876118 T G CFHR4 Missense_Mutation p.D188E 0.44 tolerated(0.07) benign(0.082) TCGA-FU-A3HZ-01 1 197031009 197031009 G A F13B Missense_Mutation p.A119V 0.37 tolerated(0.43) benign(0.41) TCGA-FU-A3HZ-01 1 198288663 198288663 T G NEK7 3'UTR 0.35 TCGA-FU-A3HZ-01 1 200017907 200017907 C A NR5A2 Silent p.V357V 0.36 TCGA-FU-A3HZ-01 1 200829334 200829334 T G CAMSAP2 3'UTR 0.37 TCGA-FU-A3HZ-01 1 200969060 200969060 T G KIF21B Missense_Mutation p.K573T 0.09 tolerated(0.06) probably_damaging(0.968) TCGA-FU-A3HZ-01 1 201058460 201058460 C T CACNA1S Missense_Mutation p.D276N 0.43 deleterious(0) possibly_damaging(0.901) TCGA-FU-A3HZ-01 1 201453898 201453898 G A CSRP1 Silent p.F175F 0.50 TCGA-FU-A3HZ-01 1 201751422 201751422 G T NAV1 Silent p.S594S 0.48 TCGA-FU-A3HZ-01 1 201860929 201860929 T C SHISA4 Silent p.A183A 0.46 TCGA-FU-A3HZ-01 1 201869359 201869359 T C LMOD1 Missense_Mutation p.N261S 0.29 benign(0.001) TCGA-FU-A3HZ-01 1 202697980 202697980 A C KDM5B 3'UTR 0.19 TCGA-FU-A3HZ-01 1 202849674 202849674 T G RABIF 3'UTR 0.26 TCGA-FU-A3HZ-01 1 202910092 202910092 T G ADIPOR1 3'UTR 0.42 TCGA-FU-A3HZ-01 1 203134602 203134602 C A ADORA1 Missense_Mutation p.F185L 0.27 deleterious(0.02) probably_damaging(1) TCGA-FU-A3HZ-01 1 203154457 203154457 C T CHI3L1 Missense_Mutation p.D38N 0.40 tolerated(0.48) benign(0.004) TCGA-FU-A3HZ-01 1 204214041 204214041 G T PLEKHA6 Nonsense_Mutation p.S708* 0.43 TCGA-FU-A3HZ-01 1 204937953 204937953 G T NFASC Missense_Mutation p.K282N 0.38 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 204985648 204985648 C A NFASC Missense_Mutation p.A1235D 0.40 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 1 204987179 204987179 T G NFASC 3'UTR 0.43 TCGA-FU-A3HZ-01 1 204991893 204991893 A C NFASC 3'UTR 0.32 TCGA-FU-A3HZ-01 1 205801880 205801880 C T PM20D1 Silent p.T377T 0.39 TCGA-FU-A3HZ-01 1 205892288 205892288 C T SLC26A9 Silent p.K565K 0.51 TCGA-FU-A3HZ-01 1 206762592 206762592 C T RASSF5 3'Flank 0.38 TCGA-FU-A3HZ-01 1 206907446 206907446 A C MAPKAPK2 3'UTR 0.33 TCGA-FU-A3HZ-01 1 207078485 207078485 T C FAIM3 Missense_Mutation p.E351G 0.09 deleterious(0.03) benign(0.03) TCGA-FU-A3HZ-01 1 207217563 207217563 G T YOD1 3'UTR 0.25 TCGA-FU-A3HZ-01 1 207780600 207780600 C T CR1 Nonsense_Mutation p.R1939* 0.43 TCGA-FU-A3HZ-01 1 207934772 207934772 T C CD46 Silent p.R218R 0.38 TCGA-FU-A3HZ-01 1 20998548 20998548 G A KIF17 Missense_Mutation p.R869C 0.32 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 211836129 211836129 G T NEK2 3'UTR 0.19 TCGA-FU-A3HZ-01 1 212502486 212502486 C A PPP2R5A Nonsense_Mutation p.S64* 0.45 TCGA-FU-A3HZ-01 1 21296060 21296060 A G EIF4G3 Silent p.G158G 0.59 TCGA-FU-A3HZ-01 1 213032269 213032269 C T FLVCR1 Missense_Mutation p.P159S 0.48 deleterious(0) probably_damaging(0.979) TCGA-FU-A3HZ-01 1 213251114 213251114 G A RPS6KC1 Missense_Mutation p.R73Q 0.54 tolerated(0.08) possibly_damaging(0.905) TCGA-FU-A3HZ-01 1 214792495 214792495 G T CENPF Nonsense_Mutation p.E169* 0.39 TCGA-FU-A3HZ-01 1 214830323 214830323 G T CENPF Nonsense_Mutation p.E2845* 0.25 TCGA-FU-A3HZ-01 1 215409909 215409909 T G KCNK2 3'UTR 0.28 TCGA-FU-A3HZ-01 1 216019310 216019310 C T USH2A Missense_Mutation p.D2971N 0.40 benign(0.001) TCGA-FU-A3HZ-01 1 216678723 216678723 G A ESRRG 3'UTR 0.41 TCGA-FU-A3HZ-01 1 21904826 21904826 A T ALPL 3'UTR 0.18 TCGA-FU-A3HZ-01 1 220440682 220440682 A G RAB3GAP2 Intron 0.40 TCGA-FU-A3HZ-01 1 220836011 220836011 T G MARK1 3'Flank 0.39 TCGA-FU-A3HZ-01 1 222712003 222712003 C A HHIPL2 Missense_Mutation p.D522Y 0.50 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 223396729 223396729 A C SUSD4 Missense_Mutation p.S436A 0.41 deleterious(0.03) benign(0.214) TCGA-FU-A3HZ-01 1 224346201 224346201 C T FBXO28 3'UTR 0.56 TCGA-FU-A3HZ-01 1 224612233 224612233 G T WDR26 Missense_Mutation p.H251N 0.50 deleterious(0.03) benign(0.222) TCGA-FU-A3HZ-01 1 224918219 224918219 C T CNIH3 Missense_Mutation p.A85V 0.49 tolerated(0.06) possibly_damaging(0.817) TCGA-FU-A3HZ-01 1 227198659 227198659 G T CDC42BPA Intron 0.21 TCGA-FU-A3HZ-01 1 227333339 227333339 T G CDC42BPA Missense_Mutation p.N332H 0.27 deleterious(0.01) benign(0.382) TCGA-FU-A3HZ-01 1 227842267 227842267 T G ZNF678 Missense_Mutation p.F106V 0.24 deleterious(0.01) possibly_damaging(0.835) TCGA-FU-A3HZ-01 1 228003518 228003518 T C PRSS38 Missense_Mutation p.V34A 0.30 tolerated(0.74) unknown(0) TCGA-FU-A3HZ-01 1 228434252 228434252 G A OBSCN Missense_Mutation p.E1353K 0.40 probably_damaging(0.935) TCGA-FU-A3HZ-01 1 228492959 228492959 A C OBSCN Missense_Mutation p.D4801A 0.08 possibly_damaging(0.654) TCGA-FU-A3HZ-01 1 228547665 228547665 C A OBSCN Intron 0.15 TCGA-FU-A3HZ-01 1 229462799 229462799 T G CCSAP Intron 0.29 TCGA-FU-A3HZ-01 1 229577084 229577084 T G NUP133 3'UTR 0.27 TCGA-FU-A3HZ-01 1 229653815 229653815 T C ABCB10 3'UTR 0.36 TCGA-FU-A3HZ-01 1 231344807 231344807 C T TRIM67 Missense_Mutation p.A645V 0.36 deleterious(0) probably_damaging(0.99) TCGA-FU-A3HZ-01 1 231374579 231374579 T C C1orf131 Intron 0.38 TCGA-FU-A3HZ-01 1 231858468 231858468 G T DISC1 Intron 0.44 TCGA-FU-A3HZ-01 1 232650491 232650491 C T SIPA1L2 Missense_Mutation p.D199N 0.43 tolerated(0.11) probably_damaging(0.999) TCGA-FU-A3HZ-01 1 232941134 232941134 G T MAP10 Missense_Mutation p.R122I 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.506) TCGA-FU-A3HZ-01 1 233112352 233112352 G A NTPCR Intron 0.53 TCGA-FU-A3HZ-01 1 235330700 235330700 G T ARID4B 3'UTR 0.20 TCGA-FU-A3HZ-01 1 235613545 235613545 A C B3GALNT2 Missense_Mutation p.D493E 0.20 deleterious(0.01) benign(0.002) TCGA-FU-A3HZ-01 1 23765253 23765253 G A ASAP3 Silent p.F363F 0.47 TCGA-FU-A3HZ-01 1 237870322 237870322 C T RYR2 Silent p.I3218I 0.31 TCGA-FU-A3HZ-01 1 237905645 237905645 T C RYR2 Missense_Mutation p.F3714S 0.32 benign(0.009) TCGA-FU-A3HZ-01 1 24022863 24022863 A C RPL11 Nonstop_Mutation p.*179Yext*? 0.37 TCGA-FU-A3HZ-01 1 243668363 243668363 A C AKT3 3'UTR 0.08 TCGA-FU-A3HZ-01 1 24410878 24410878 C A MYOM3 Intron 0.43 TCGA-FU-A3HZ-01 1 244214731 244214731 T G ZBTB18 5'UTR 0.10 TCGA-FU-A3HZ-01 1 244643083 244643083 T G C1orf101 Missense_Mutation p.V108G 0.25 deleterious(0.01) possibly_damaging(0.49) TCGA-FU-A3HZ-01 1 244736009 244736009 A C C1orf101 Missense_Mutation p.K629Q 0.09 tolerated(0.22) benign(0.067) TCGA-FU-A3HZ-01 1 245022598 245022598 T G HNRNPU Missense_Mutation p.T366P 0.25 deleterious(0.05) unknown(0) TCGA-FU-A3HZ-01 1 247694771 247694771 G A OR2C3 3'UTR 0.31 TCGA-FU-A3HZ-01 1 247920819 247920819 A G OR1C1 Missense_Mutation p.M297T 0.39 deleterious(0) benign(0.081) TCGA-FU-A3HZ-01 1 248039699 248039699 A T TRIM58 Missense_Mutation p.I457F 0.37 deleterious(0.02) possibly_damaging(0.493) TCGA-FU-A3HZ-01 1 248263847 248263847 C T OR2L13 3'UTR 0.27 TCGA-FU-A3HZ-01 1 248308725 248308725 T G OR2M5 Missense_Mutation p.I92M 0.31 deleterious(0.01) possibly_damaging(0.801) TCGA-FU-A3HZ-01 1 248366705 248366705 C A OR2M3 Nonsense_Mutation p.C112* 0.36 TCGA-FU-A3HZ-01 1 248402760 248402760 T G OR2M4 Missense_Mutation p.F177C 0.34 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 248402986 248402986 C T OR2M4 Silent p.Y252Y 0.35 TCGA-FU-A3HZ-01 1 248551645 248551645 A T OR2T6 Missense_Mutation p.M246L 0.08 tolerated(0.15) benign(0.001) TCGA-FU-A3HZ-01 1 248756811 248756811 C G OR2T10 Missense_Mutation p.A87P 0.33 tolerated(0.14) benign(0.222) TCGA-FU-A3HZ-01 1 25599101 25599101 A C RHD Missense_Mutation p.E21D 0.13 deleterious(0.01) probably_damaging(0.968) TCGA-FU-A3HZ-01 1 25634165 25634165 A C RHD Intron 0.41 TCGA-FU-A3HZ-01 1 25669500 25669500 A C TMEM50A Missense_Mutation p.T48P 0.28 tolerated(0.26) benign(0.001) TCGA-FU-A3HZ-01 1 26449278 26449278 A C PDIK1L 3'UTR 0.29 TCGA-FU-A3HZ-01 1 26526467 26526467 T C CATSPER4 Missense_Mutation p.F302S 0.41 deleterious(0.04) benign(0.14) TCGA-FU-A3HZ-01 1 26607755 26607755 C A SH3BGRL3 3'UTR 0.34 TCGA-FU-A3HZ-01 1 26753878 26753878 C A LIN28A 3'UTR 0.19 TCGA-FU-A3HZ-01 1 27106354 27106354 C T ARID1A Nonsense_Mutation p.R1989* 0.24 TCGA-FU-A3HZ-01 1 27106364 27106364 C A ARID1A Nonsense_Mutation p.S1992* 0.45 TCGA-FU-A3HZ-01 1 28087634 28087634 C T FAM76A 3'Flank 0.42 TCGA-FU-A3HZ-01 1 28150271 28150271 T G STX12 3'UTR 0.12 TCGA-FU-A3HZ-01 1 28362124 28362124 T G EYA3 Missense_Mutation p.T98P 0.42 tolerated(0.14) possibly_damaging(0.742) TCGA-FU-A3HZ-01 1 29018110 29018110 A C GMEB1 Silent p.I85I 0.25 TCGA-FU-A3HZ-01 1 29533354 29533354 G A MECR Missense_Mutation p.P157L 0.36 deleterious(0) possibly_damaging(0.833) TCGA-FU-A3HZ-01 1 2979414 2979414 C A LINC00982 RNA 0.53 TCGA-FU-A3HZ-01 1 32207497 32207497 G A BAI2 Missense_Mutation p.R497C 0.50 deleterious(0) probably_damaging(0.987) TCGA-FU-A3HZ-01 1 32259416 32259416 G T SPOCD1 Missense_Mutation p.S822R 0.40 deleterious(0.02) benign(0.161) TCGA-FU-A3HZ-01 1 32568452 32568452 T G TMEM39B 3'UTR 0.11 TCGA-FU-A3HZ-01 1 32946572 32946572 C T ZBTB8B Missense_Mutation p.R358W 0.32 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 3313156 3313156 C T PRDM16 Silent p.D225D 0.45 TCGA-FU-A3HZ-01 1 33147287 33147287 C A SYNC 3'UTR 0.44 TCGA-FU-A3HZ-01 1 35251510 35251510 C T GJB3 3'UTR 0.26 TCGA-FU-A3HZ-01 1 36023792 36023792 A G NCDN Translation_Start_Site p.M1? 0.07 deleterious_low_confidence(0) benign(0.019) TCGA-FU-A3HZ-01 1 36786140 36786142 GAG - SH3D21 In_Frame_Del p.E627del 0.39 TCGA-FU-A3HZ-01 1 36926863 36926863 A C MRPS15 Splice_Site p.X100_splice 0.28 TCGA-FU-A3HZ-01 1 36937198 36937198 G T CSF3R Missense_Mutation p.S374Y 0.43 deleterious(0) possibly_damaging(0.452) TCGA-FU-A3HZ-01 1 37267197 37267197 T G GRIK3 3'UTR 0.26 TCGA-FU-A3HZ-01 1 39876975 39876975 G T KIAA0754 Missense_Mutation p.K210N 0.41 possibly_damaging(0.607) TCGA-FU-A3HZ-01 1 39934326 39934326 C T MACF1 Missense_Mutation p.R5206C 0.38 probably_damaging(0.91) TCGA-FU-A3HZ-01 1 40097203 40097203 A C HEYL Missense_Mutation p.L66V 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-FU-A3HZ-01 1 40146726 40146726 G T HPCAL4 3'UTR 0.50 TCGA-FU-A3HZ-01 1 40704800 40704800 T G RLF Missense_Mutation p.L1476V 0.33 tolerated(0.22) benign(0.074) TCGA-FU-A3HZ-01 1 40737688 40737688 G A ZMPSTE24 Silent p.T250T 0.43 TCGA-FU-A3HZ-01 1 40881971 40881971 C A SMAP2 Missense_Mutation p.L269I 0.43 deleterious(0) probably_damaging(0.978) TCGA-FU-A3HZ-01 1 41090510 41090510 G T RIMS3 3'UTR 0.34 TCGA-FU-A3HZ-01 1 41503061 41503061 A C SCMH1 Missense_Mutation p.S541A 0.35 tolerated(0.17) benign(0.003) TCGA-FU-A3HZ-01 1 42048520 42048520 G A HIVEP3 Missense_Mutation p.A650V 0.08 probably_damaging(0.997) TCGA-FU-A3HZ-01 1 42645221 42645221 A C FOXJ3 3'UTR 0.53 TCGA-FU-A3HZ-01 1 44396572 44396572 G T ST3GAL3 3'UTR 0.33 TCGA-FU-A3HZ-01 1 45294014 45294014 G A PTCH2 Missense_Mutation p.R555W 0.35 deleterious(0.04) possibly_damaging(0.708) TCGA-FU-A3HZ-01 1 46657887 46657887 A C POMGNT1 Missense_Mutation p.D474E 0.34 probably_damaging(0.982) TCGA-FU-A3HZ-01 1 47489649 47489649 T C CYP4X1 Missense_Mutation p.F54L 0.32 tolerated(1) benign(0.01) TCGA-FU-A3HZ-01 1 47905544 47905544 G T FOXD2 3'UTR 0.37 TCGA-FU-A3HZ-01 1 49100248 49100248 G A AGBL4 Missense_Mutation p.R290C 0.44 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 52870415 52870415 T G PRPF38A 5'UTR 0.42 TCGA-FU-A3HZ-01 1 52991566 52991566 T G ZCCHC11 Missense_Mutation p.E129D 0.09 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-FU-A3HZ-01 1 53287173 53287173 G T ZYG11B Missense_Mutation p.D703Y 0.33 deleterious(0.01) benign(0.124) TCGA-FU-A3HZ-01 1 53352630 53352630 C A ZYG11A Missense_Mutation p.S670Y 0.49 deleterious(0) probably_damaging(0.994) TCGA-FU-A3HZ-01 1 53972053 53972053 C T GLIS1 3'UTR 0.32 TCGA-FU-A3HZ-01 1 54273423 54273423 T G NDC1 Missense_Mutation p.N266T 0.32 deleterious(0.01) benign(0.278) TCGA-FU-A3HZ-01 1 54497852 54497852 T G TMEM59 Missense_Mutation p.K315Q 0.20 deleterious(0) probably_damaging(0.973) TCGA-FU-A3HZ-01 1 55465030 55465030 C A BSND Nonsense_Mutation p.Y57* 0.62 TCGA-FU-A3HZ-01 1 55569602 55569602 C A USP24 Nonsense_Mutation p.E1658* 0.31 TCGA-FU-A3HZ-01 1 55624561 55624561 G T USP24 Missense_Mutation p.S406Y 0.44 deleterious(0) possibly_damaging(0.732) TCGA-FU-A3HZ-01 1 57173441 57173441 A C PRKAA2 3'UTR 0.16 TCGA-FU-A3HZ-01 1 63906588 63906588 A C ITGB3BP 3'UTR 0.42 TCGA-FU-A3HZ-01 1 65068492 65068492 C T CACHD1 Silent p.F87F 0.34 TCGA-FU-A3HZ-01 1 65129402 65129402 C T CACHD1 Missense_Mutation p.A608V 0.67 deleterious(0.02) probably_damaging(0.922) TCGA-FU-A3HZ-01 1 65139113 65139113 T C CACHD1 Missense_Mutation p.V847A 0.33 deleterious(0.01) benign(0.196) TCGA-FU-A3HZ-01 1 65831606 65831606 C A DNAJC6 Missense_Mutation p.S128Y 0.21 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 65878639 65878639 G T DNAJC6 Missense_Mutation p.K948N 0.33 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 1 66036405 66036405 G T LEPR Missense_Mutation p.R97I 0.45 tolerated(0.26) benign(0.001) TCGA-FU-A3HZ-01 1 6604896 6604896 A C NOL9 Missense_Mutation p.L323V 0.08 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 1 66458699 66458699 G A PDE4B Intron 0.56 TCGA-FU-A3HZ-01 1 66839818 66839818 C A PDE4B 3'UTR 0.50 TCGA-FU-A3HZ-01 1 6695696 6695696 G T DNAJC11 3'UTR 0.47 TCGA-FU-A3HZ-01 1 67279730 67279730 C T WDR78 3'UTR 0.15 TCGA-FU-A3HZ-01 1 70801747 70801747 T G ANKRD13C Missense_Mutation p.N156H 0.58 tolerated(1) benign(0.004) TCGA-FU-A3HZ-01 1 70889980 70889980 G A CTH Missense_Mutation p.E157K 0.24 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 1 74492633 74492633 C A LRRIQ3 Missense_Mutation p.R580I 0.55 deleterious(0.01) possibly_damaging(0.668) TCGA-FU-A3HZ-01 1 76877955 76877955 G A ST6GALNAC3 Missense_Mutation p.R159H 0.14 probably_damaging(0.995) TCGA-FU-A3HZ-01 1 77555492 77555492 A C PIGK 3'UTR 0.33 TCGA-FU-A3HZ-01 1 78205036 78205036 C A USP33 Nonsense_Mutation p.E120* 0.28 TCGA-FU-A3HZ-01 1 78428511 78428511 G A FUBP1 Missense_Mutation p.R430C 0.26 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 1 7897130 7897130 C A PER3 Missense_Mutation p.S1148Y 0.55 deleterious(0) probably_damaging(0.951) TCGA-FU-A3HZ-01 1 79094044 79094044 T C IFI44L Silent p.R148R 0.52 TCGA-FU-A3HZ-01 1 8073301 8073301 C T ERRFI1 Missense_Mutation p.R453H 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 1 82302631 82302631 C A LPHN2 5'UTR 0.38 TCGA-FU-A3HZ-01 1 84810492 84810492 G T SAMD13 Intron 0.22 TCGA-FU-A3HZ-01 1 85665949 85665949 C A SYDE2 Missense_Mutation p.R244I 0.28 deleterious_low_confidence(0) benign(0.157) TCGA-FU-A3HZ-01 1 86487947 86487947 C T COL24A1 Silent p.G744G 0.38 TCGA-FU-A3HZ-01 1 86488648 86488648 G T COL24A1 Missense_Mutation p.P698T 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-FU-A3HZ-01 1 87036839 87036839 C A CLCA4 Missense_Mutation p.S421Y 0.25 deleterious(0) possibly_damaging(0.903) TCGA-FU-A3HZ-01 1 89520802 89520802 T C GBP1 Missense_Mutation p.I489V 0.27 tolerated(0.07) benign(0.078) TCGA-FU-A3HZ-01 1 91406821 91406821 C A ZNF644 Missense_Mutation p.K30N 0.41 tolerated_low_confidence(0.05) benign(0.423) TCGA-FU-A3HZ-01 1 91818093 91818093 T G HFM1 Silent p.L649L 0.19 TCGA-FU-A3HZ-01 1 93583965 93583965 A G MTF2 Silent p.Q232Q 0.44 TCGA-FU-A3HZ-01 1 94019093 94019093 T G FNBP1L 3'UTR 0.73 TCGA-FU-A3HZ-01 1 94019489 94019489 T G FNBP1L 3'UTR 0.43 TCGA-FU-A3HZ-01 1 94020058 94020058 T G FNBP1L 3'UTR 0.15 TCGA-FU-A3HZ-01 1 97279084 97279084 T G PTBP2 3'UTR 0.27 TCGA-FU-A3HZ-01 1 97280439 97280439 A G PTBP2 3'Flank 0.41 TCGA-FU-A3HZ-01 1 979321 979321 C T AGRN Silent p.Y639Y 0.26 TCGA-FU-A3HZ-01 1 99358111 99358111 T C LPPR5 3'UTR 0.40 TCGA-FU-A3HZ-01 1 99774484 99774484 A G LPPR4 3'UTR 0.25 TCGA-FU-A3HZ-01 20 10287971 10287971 G A SNAP25 3'UTR 0.39 TCGA-FU-A3HZ-01 20 10639163 10639163 C T JAG1 Missense_Mutation p.G216D 0.33 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 20 11900227 11900227 T C BTBD3 Intron 0.46 TCGA-FU-A3HZ-01 20 1288515 1288515 G A SNPH 3'UTR 0.43 TCGA-FU-A3HZ-01 20 1350326 1350326 A C FKBP1A 3'UTR 0.62 TCGA-FU-A3HZ-01 20 18038267 18038267 G T OVOL2 Silent p.V4V 0.19 TCGA-FU-A3HZ-01 20 18123370 18123370 G A CSRP2BP Silent p.S22S 0.35 TCGA-FU-A3HZ-01 20 19982068 19982068 A C RIN2 3'UTR 0.46 TCGA-FU-A3HZ-01 20 21492085 21492085 T A NKX2-2 3'UTR 0.30 TCGA-FU-A3HZ-01 20 2380954 2380954 C A TGM6 Missense_Mutation p.L285I 0.35 deleterious(0) probably_damaging(0.99) TCGA-FU-A3HZ-01 20 257718 257718 C A C20orf96 Missense_Mutation p.K264N 0.30 tolerated(0.34) benign(0.026) TCGA-FU-A3HZ-01 20 26084087 26084087 A C NCOR1P1 RNA 0.33 TCGA-FU-A3HZ-01 20 31108723 31108723 G A C20orf112 Silent p.I66I 0.44 TCGA-FU-A3HZ-01 20 32264972 32264972 T C E2F1 Silent p.P335P 0.35 TCGA-FU-A3HZ-01 20 33590267 33590267 A C TRPC4AP 3'UTR 0.38 TCGA-FU-A3HZ-01 20 34537261 34537261 C T PHF20 3'UTR 0.50 TCGA-FU-A3HZ-01 20 34572030 34572030 G A CNBD2 Silent p.P178P 0.33 TCGA-FU-A3HZ-01 20 34810275 34810275 G T EPB41L1 Nonsense_Mutation p.E866* 0.56 TCGA-FU-A3HZ-01 20 35517683 35517683 A C TLDC2 Missense_Mutation p.D181A 0.10 deleterious(0) probably_damaging(0.979) TCGA-FU-A3HZ-01 20 35769612 35769612 C A MROH8 Nonsense_Mutation p.E508* 0.34 TCGA-FU-A3HZ-01 20 36720738 36720738 T G RPRD1B 3'UTR 0.47 TCGA-FU-A3HZ-01 20 3672204 3672204 G A SIGLEC1 Silent p.G1458G 0.37 TCGA-FU-A3HZ-01 20 3786165 3786165 C T CDC25B 3'UTR 0.36 TCGA-FU-A3HZ-01 20 42825852 42825852 G A OSER1 Missense_Mutation p.S240L 0.15 tolerated(0.08) benign(0.073) TCGA-FU-A3HZ-01 20 42887050 42887050 C A GDAP1L1 Intron 0.42 TCGA-FU-A3HZ-01 20 43057043 43057043 A G HNF4A Missense_Mutation p.T400A 0.27 tolerated(0.82) benign(0.08) TCGA-FU-A3HZ-01 20 43726587 43726587 C T KCNS1 Missense_Mutation p.E276K 0.62 deleterious(0) probably_damaging(0.979) TCGA-FU-A3HZ-01 20 43930037 43930037 G A MATN4 Silent p.C230C 0.12 TCGA-FU-A3HZ-01 20 44175982 44175982 T C EPPIN-WFDC6 Silent p.G5G 0.16 TCGA-FU-A3HZ-01 20 44176030 44176030 G A EPPIN-WFDC6 5'UTR 0.26 TCGA-FU-A3HZ-01 20 44470405 44470405 C T ACOT8 3'UTR 0.44 TCGA-FU-A3HZ-01 20 44569771 44569771 G A PCIF1 Missense_Mutation p.E200K 0.41 deleterious(0) possibly_damaging(0.879) TCGA-FU-A3HZ-01 20 45085177 45085177 G T ZNF663P RNA 0.21 TCGA-FU-A3HZ-01 20 45174665 45174665 C T OCSTAMP Silent p.E116E 0.29 TCGA-FU-A3HZ-01 20 45855964 45855964 C T ZMYND8 Missense_Mutation p.E954K 0.41 tolerated(0.07) probably_damaging(0.998) TCGA-FU-A3HZ-01 20 47444178 47444178 C T PREX1 Splice_Site p.X73_splice 0.09 TCGA-FU-A3HZ-01 20 49191165 49191165 C T PTPN1 Nonsense_Mutation p.R156* 0.35 TCGA-FU-A3HZ-01 20 49366912 49366912 C T PARD6B Missense_Mutation p.P336S 0.40 tolerated_low_confidence(0.31) benign(0.006) TCGA-FU-A3HZ-01 20 49510335 49510335 G A ADNP Nonsense_Mutation p.R306* 0.34 TCGA-FU-A3HZ-01 20 49620923 49620923 C T KCNG1 Missense_Mutation p.E399K 0.32 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 20 50092153 50092153 G T NFATC2 Missense_Mutation p.F459L 0.11 deleterious(0.03) probably_damaging(0.96) TCGA-FU-A3HZ-01 20 51871025 51871025 C A TSHZ2 Missense_Mutation p.S343Y 0.33 tolerated(0.24) benign(0.1) TCGA-FU-A3HZ-01 20 52561205 52561205 G A BCAS1 3'UTR 0.52 TCGA-FU-A3HZ-01 20 52788147 52788147 T G CYP24A1 Missense_Mutation p.E171A 0.09 tolerated(0.33) probably_damaging(0.916) TCGA-FU-A3HZ-01 20 5294961 5294961 C A PROKR2 Missense_Mutation p.D19Y 0.11 tolerated(0.2) benign(0.14) TCGA-FU-A3HZ-01 20 55020997 55020997 G A CASS4 Silent p.P167P 0.33 TCGA-FU-A3HZ-01 20 55896644 55896644 C T MIR4325 RNA 0.26 TCGA-FU-A3HZ-01 20 55949825 55949825 T G RAE1 Missense_Mutation p.F330V 0.33 deleterious(0) possibly_damaging(0.893) TCGA-FU-A3HZ-01 20 58489189 58489189 C A SYCP2 Missense_Mutation p.R251I 0.24 deleterious(0.01) benign(0.318) TCGA-FU-A3HZ-01 20 6025204 6025204 C A LRRN4 Missense_Mutation p.R328I 0.41 deleterious(0) possibly_damaging(0.671) TCGA-FU-A3HZ-01 20 60550410 60550410 T G TAF4 3'UTR 0.29 TCGA-FU-A3HZ-01 20 61299485 61299485 T C SLCO4A1 Missense_Mutation p.V587A 0.35 tolerated(0.1) benign(0.021) TCGA-FU-A3HZ-01 20 61809894 61809894 T C MIR124-3 RNA 0.28 TCGA-FU-A3HZ-01 20 62071029 62071029 C A KCNQ2 Missense_Mutation p.K283N 0.25 deleterious(0) probably_damaging(0.984) TCGA-FU-A3HZ-01 20 62187146 62187146 C T C20orf195 Missense_Mutation p.R44C 0.33 deleterious(0) probably_damaging(0.944) TCGA-FU-A3HZ-01 20 8713980 8713980 T G PLCB1 Missense_Mutation p.F662V 0.08 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 20 8722118 8722118 C T PLCB1 Silent p.I807I 0.48 TCGA-FU-A3HZ-01 20 8862649 8862649 A C PLCB1 3'UTR 0.59 TCGA-FU-A3HZ-01 21 10906875 10906875 C A TPTE 3'UTR 0.15 TCGA-FU-A3HZ-01 21 11039283 11039283 T C BAGE2 RNA 0.04 TCGA-FU-A3HZ-01 21 15755429 15755429 C A HSPA13 Missense_Mutation p.E4D 0.30 tolerated(0.11) benign(0.057) TCGA-FU-A3HZ-01 21 16335176 16335176 C A NRIP1 3'UTR 0.35 TCGA-FU-A3HZ-01 21 17246834 17246834 G T USP25 Nonsense_Mutation p.E930* 0.36 TCGA-FU-A3HZ-01 21 22790877 22790877 C A NCAM2 Missense_Mutation p.L490I 0.46 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 21 30358482 30358482 C A LTN1 Missense_Mutation p.R154I 0.23 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 21 30547123 30547123 G T MAP3K7CL Missense_Mutation p.E213D 0.17 tolerated(0.08) probably_damaging(0.99) TCGA-FU-A3HZ-01 21 31587141 31587141 C A CLDN8 3'UTR 0.28 TCGA-FU-A3HZ-01 21 32253821 32253821 C A KRTAP11-1 Missense_Mutation p.R8I 0.35 tolerated(0.07) possibly_damaging(0.869) TCGA-FU-A3HZ-01 21 32537277 32537277 A C TIAM1 Splice_Site p.X997_splice 0.32 TCGA-FU-A3HZ-01 21 33064673 33064673 C A SCAF4 Nonsense_Mutation p.E535* 0.86 TCGA-FU-A3HZ-01 21 33642063 33642063 A C MIS18A Silent p.L192L 0.46 TCGA-FU-A3HZ-01 21 33949030 33949030 T G TCP10L 3'UTR 0.38 TCGA-FU-A3HZ-01 21 34072399 34072399 A C SYNJ1 Missense_Mutation p.H115Q 0.19 tolerated(0.17) benign(0.073) TCGA-FU-A3HZ-01 21 34134460 34134460 A G PAXBP1 Missense_Mutation p.I273T 0.33 deleterious(0) probably_damaging(0.959) TCGA-FU-A3HZ-01 21 35189816 35189816 T C ITSN1 Intron 0.39 TCGA-FU-A3HZ-01 21 36163793 36163793 A C RUNX1 3'UTR 0.38 TCGA-FU-A3HZ-01 21 37635876 37635876 C A DOPEY2 Missense_Mutation p.S1783Y 0.39 deleterious(0.01) benign(0.004) TCGA-FU-A3HZ-01 21 37665628 37665628 G A DOPEY2 Missense_Mutation p.S2219N 0.44 tolerated(0.07) benign(0.002) TCGA-FU-A3HZ-01 21 37717218 37717218 A C MORC3 Silent p.T298T 0.39 TCGA-FU-A3HZ-01 21 38115793 38115793 A C SIM2 Missense_Mutation p.K368N 0.14 deleterious(0.02) benign(0.403) TCGA-FU-A3HZ-01 21 38512877 38512877 A G TTC3 Missense_Mutation p.E559G 0.24 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 21 39772513 39772513 C A ERG Missense_Mutation p.R250I 0.53 deleterious(0.02) possibly_damaging(0.899) TCGA-FU-A3HZ-01 21 42767645 42767645 A C MX2 Missense_Mutation p.N335H 0.07 tolerated(0.05) probably_damaging(0.973) TCGA-FU-A3HZ-01 21 43852274 43852274 C T UBASH3A Silent p.F411F 0.41 TCGA-FU-A3HZ-01 21 45798886 45798886 G T TRPM2 Missense_Mutation p.D341Y 0.38 tolerated(1) benign(0) TCGA-FU-A3HZ-01 21 46320235 46320235 G A ITGB2 Silent p.F299F 0.38 TCGA-FU-A3HZ-01 21 47647571 47647571 T G LSS Missense_Mutation p.T72P 0.28 deleterious(0.01) probably_damaging(0.917) TCGA-FU-A3HZ-01 21 9907319 9907319 G T TEKT4P2 RNA 0.12 TCGA-FU-A3HZ-01 22 18022113 18022113 C T CECR2 Nonsense_Mutation p.R740* 0.39 TCGA-FU-A3HZ-01 22 19486625 19486625 T C CDC45 Missense_Mutation p.W251R 0.45 deleterious(0) possibly_damaging(0.593) TCGA-FU-A3HZ-01 22 20133605 20133605 G A ZDHHC8 Intron 0.42 TCGA-FU-A3HZ-01 22 21088097 21088097 C T PI4KA Missense_Mutation p.D1363N 0.44 tolerated(0.18) possibly_damaging(0.581) TCGA-FU-A3HZ-01 22 21348031 21348031 C T LZTR1 Silent p.F447F 0.48 TCGA-FU-A3HZ-01 22 21357492 21357492 G T AC002472.1 3'Flank 0.37 TCGA-FU-A3HZ-01 22 21362975 21362975 T C AC002472.1 5'Flank 0.31 TCGA-FU-A3HZ-01 22 21742863 21742863 G T RIMBP3B Missense_Mutation p.K1572N 0.16 deleterious(0.01) possibly_damaging(0.663) TCGA-FU-A3HZ-01 22 21803696 21803696 G A HIC2 3'UTR 0.46 TCGA-FU-A3HZ-01 22 21989060 21989060 G T CCDC116 Missense_Mutation p.E236D 0.53 deleterious(0.03) benign(0.379) TCGA-FU-A3HZ-01 22 22842318 22842318 A C ZNF280B Missense_Mutation p.F469C 0.36 deleterious(0) probably_damaging(0.918) TCGA-FU-A3HZ-01 22 22842526 22842526 C T ZNF280B Missense_Mutation p.E400K 0.50 deleterious(0.02) probably_damaging(0.954) TCGA-FU-A3HZ-01 22 24730477 24730477 G A SPECC1L Silent p.S832S 0.41 TCGA-FU-A3HZ-01 22 25123947 25123947 A C PIWIL3 Missense_Mutation p.F669C 0.52 deleterious(0) probably_damaging(0.989) TCGA-FU-A3HZ-01 22 26164885 26164885 G T MYO18B Missense_Mutation p.K334N 0.31 deleterious_low_confidence(0.01) benign(0.299) TCGA-FU-A3HZ-01 22 26688897 26688897 C T SEZ6L Missense_Mutation p.S207L 0.50 tolerated(0.29) benign(0.003) TCGA-FU-A3HZ-01 22 26829794 26829794 C T ASPHD2 Silent p.F71F 0.46 TCGA-FU-A3HZ-01 22 28144641 28144641 T G MN1 3'UTR 0.32 TCGA-FU-A3HZ-01 22 28426232 28426232 C T TTC28 Missense_Mutation p.R1352H 0.48 deleterious(0.02) benign(0.01) TCGA-FU-A3HZ-01 22 29454723 29454723 C A C22orf31 3'UTR 0.33 TCGA-FU-A3HZ-01 22 30637580 30637580 C T LIF 3'UTR 0.31 TCGA-FU-A3HZ-01 22 31354670 31354670 C T MORC2 5'UTR 0.33 TCGA-FU-A3HZ-01 22 32289577 32289577 T C DEPDC5 Missense_Mutation p.V1339A 0.39 deleterious(0.04) probably_damaging(0.992) TCGA-FU-A3HZ-01 22 32587262 32587262 G A RFPL2 Missense_Mutation p.R212C 0.44 tolerated(0.15) benign(0.005) TCGA-FU-A3HZ-01 22 37768903 37768903 T G ELFN2 3'UTR 0.12 TCGA-FU-A3HZ-01 22 39216199 39216199 C A NPTXR 3'UTR 0.44 TCGA-FU-A3HZ-01 22 39262280 39262280 G A CBX6 Silent p.F391F 0.58 TCGA-FU-A3HZ-01 22 39421629 39421629 C T APOBEC3D Silent p.F186F 0.31 TCGA-FU-A3HZ-01 22 39527354 39527354 T C CBX7 3'UTR 0.24 TCGA-FU-A3HZ-01 22 40681651 40681651 C T TNRC6B Silent p.G1195G 0.49 TCGA-FU-A3HZ-01 22 41527552 41527552 G A EP300 Silent p.P481P 0.41 TCGA-FU-A3HZ-01 22 42538561 42538561 G A NDUFA6-AS1 3'Flank 0.44 TCGA-FU-A3HZ-01 22 43604187 43604187 G A SCUBE1 Silent p.Y875Y 0.47 TCGA-FU-A3HZ-01 22 46239655 46239655 T G ATXN10 3'UTR 0.14 TCGA-FU-A3HZ-01 22 46655437 46655437 G A PKDREJ Silent p.S1261S 0.40 TCGA-FU-A3HZ-01 22 46932128 46932128 C T CELSR1 Missense_Mutation p.E314K 0.41 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 22 47287219 47287219 G T TBC1D22A Nonsense_Mutation p.E256* 0.44 TCGA-FU-A3HZ-01 22 50666368 50666368 A G TUBGCP6 Silent p.G460G 0.12 TCGA-FU-A3HZ-01 22 50954903 50954903 G A NCAPH2 Missense_Mutation p.E46K 0.18 tolerated(0.35) benign(0.031) TCGA-FU-A3HZ-01 22 50956613 50956613 C T NCAPH2 Silent p.C184C 0.46 TCGA-FU-A3HZ-01 22 51205966 51205966 A C RABL2B 3'UTR 0.53 TCGA-FU-A3HZ-01 2 100185376 100185376 G A AFF3 Missense_Mutation p.P999S 0.31 tolerated(0.15) benign(0.211) TCGA-FU-A3HZ-01 2 100209829 100209829 G T AFF3 Missense_Mutation p.S790Y 0.14 deleterious(0.04) benign(0.287) TCGA-FU-A3HZ-01 2 10105420 10105420 C A GRHL1 Missense_Mutation p.D340E 0.56 deleterious(0) possibly_damaging(0.672) TCGA-FU-A3HZ-01 2 102501684 102501684 T G MAP4K4 Missense_Mutation p.L1041V 0.32 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-FU-A3HZ-01 2 10269540 10269540 G A RRM2 3'UTR 0.34 TCGA-FU-A3HZ-01 2 102792863 102792863 A C IL1R1 Missense_Mutation p.I452L 0.29 deleterious(0.02) possibly_damaging(0.658) TCGA-FU-A3HZ-01 2 102956678 102956678 T G IL1RL1 Missense_Mutation p.I131M 0.47 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 2 103090436 103090436 T G SLC9A4 Missense_Mutation p.V73G 0.12 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 2 108478125 108478125 C A RGPD4 Missense_Mutation p.L712M 0.34 deleterious(0) possibly_damaging(0.86) TCGA-FU-A3HZ-01 2 10914999 10914999 G T ATP6V1C2 Nonsense_Mutation p.E242* 0.12 TCGA-FU-A3HZ-01 2 10923490 10923490 C A ATP6V1C2 3'UTR 0.45 TCGA-FU-A3HZ-01 2 109237831 109237831 A C LIMS1 Missense_Mutation p.K7N 0.12 tolerated_low_confidence(0.4) benign(0.001) TCGA-FU-A3HZ-01 2 109345596 109345596 G T RANBP2 Missense_Mutation p.M27I 0.32 tolerated(0.13) benign(0.005) TCGA-FU-A3HZ-01 2 109529190 109529190 T G EDAR Missense_Mutation p.N158T 0.21 tolerated(0.43) benign(0.015) TCGA-FU-A3HZ-01 2 110373674 110373674 T G SOWAHC 3'UTR 0.69 TCGA-FU-A3HZ-01 2 110376045 110376045 C T SOWAHC 3'UTR 0.31 TCGA-FU-A3HZ-01 2 113012538 113012538 G T ZC3H8 Missense_Mutation p.F7L 0.31 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-FU-A3HZ-01 2 113057460 113057460 G A ZC3H6 Missense_Mutation p.D23N 0.31 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 2 113057490 113057490 G T ZC3H6 Nonsense_Mutation p.E33* 0.45 TCGA-FU-A3HZ-01 2 113057542 113057542 G T ZC3H6 Missense_Mutation p.R50I 0.35 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 2 113487254 113487254 C T NT5DC4 Silent p.A407A 0.39 TCGA-FU-A3HZ-01 2 114340638 114340638 C T MIR1302-3 RNA 0.10 TCGA-FU-A3HZ-01 2 116600391 116600391 C A DPP10 3'Flank 0.28 TCGA-FU-A3HZ-01 2 116600588 116600588 G A DPP10 3'Flank 0.16 TCGA-FU-A3HZ-01 2 116600739 116600739 C A DPP10 3'Flank 0.39 TCGA-FU-A3HZ-01 2 121708959 121708959 C A GLI2 Missense_Mutation p.S132Y 0.45 deleterious(0) possibly_damaging(0.701) TCGA-FU-A3HZ-01 2 121740398 121740398 A C GLI2 Missense_Mutation p.K542T 0.22 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 2 124999880 124999880 C T CNTNAP5 Silent p.Y97Y 0.68 TCGA-FU-A3HZ-01 2 128263003 128263003 G T IWS1 Missense_Mutation p.S159Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-FU-A3HZ-01 2 128460100 128460100 C T WDR33 3'UTR 0.61 TCGA-FU-A3HZ-01 2 128471326 128471326 G A WDR33 Nonsense_Mutation p.R1047* 0.21 TCGA-FU-A3HZ-01 2 130798022 130798022 A G KLF2P1 3'Flank 0.29 TCGA-FU-A3HZ-01 2 130897802 130897802 C T CCDC74B Missense_Mutation p.E276K 0.40 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 2 130909896 130909896 G A SMPD4 3'UTR 0.24 TCGA-FU-A3HZ-01 2 131524356 131524356 T G AMER3 3'UTR 0.20 TCGA-FU-A3HZ-01 2 131809752 131809752 C A FAM168B 3'UTR 0.53 TCGA-FU-A3HZ-01 2 132914714 132914714 C T ANKRD30BL Silent p.L113L 0.13 TCGA-FU-A3HZ-01 2 133174546 133174546 T G GPR39 5'UTR 0.08 TCGA-FU-A3HZ-01 2 133429717 133429717 C T NCKAP5 3'UTR 0.24 TCGA-FU-A3HZ-01 2 133429819 133429819 A C NCKAP5 3'UTR 0.24 TCGA-FU-A3HZ-01 2 133430354 133430354 A C NCKAP5 3'UTR 0.27 TCGA-FU-A3HZ-01 2 135743751 135743751 T C MAP3K19 Silent p.S897S 0.33 TCGA-FU-A3HZ-01 2 136389450 136389450 C T R3HDM1 Missense_Mutation p.P193S 0.36 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 2 136482154 136482154 C A R3HDM1 3'UTR 0.28 TCGA-FU-A3HZ-01 2 136528183 136528183 G T UBXN4 Nonsense_Mutation p.E234* 0.30 TCGA-FU-A3HZ-01 2 141625357 141625357 C A LRP1B Nonsense_Mutation p.E1461* 0.32 TCGA-FU-A3HZ-01 2 145147236 145147236 C A ZEB2 Nonsense_Mutation p.E1143* 0.27 TCGA-FU-A3HZ-01 2 148654009 148654009 G T ACVR2A Missense_Mutation p.K65N 0.44 tolerated(0.41) possibly_damaging(0.903) TCGA-FU-A3HZ-01 2 148674879 148674879 G A ACVR2A Missense_Mutation p.E234K 0.21 deleterious(0) possibly_damaging(0.805) TCGA-FU-A3HZ-01 2 149226300 149226300 C A MBD5 Missense_Mutation p.S263Y 0.29 deleterious(0) possibly_damaging(0.781) TCGA-FU-A3HZ-01 2 151324996 151324996 G A RND3 3'UTR 0.45 TCGA-FU-A3HZ-01 2 152348657 152348657 C A NEB Nonsense_Mutation p.E8338* 0.49 TCGA-FU-A3HZ-01 2 152518712 152518712 A C NEB Nonsense_Mutation p.Y1969* 0.38 TCGA-FU-A3HZ-01 2 15470742 15470742 T G NBAS Missense_Mutation p.T1443P 0.08 deleterious(0.04) benign(0.265) TCGA-FU-A3HZ-01 2 160206467 160206467 A C BAZ2B Missense_Mutation p.F1539V 0.46 benign(0.109) TCGA-FU-A3HZ-01 2 160728989 160728989 A C LY75-CD302 Missense_Mutation p.F697C 0.42 deleterious(0) probably_damaging(0.987) TCGA-FU-A3HZ-01 2 160735169 160735169 T G LY75-CD302 Missense_Mutation p.N527H 0.29 tolerated(0.11) probably_damaging(0.991) TCGA-FU-A3HZ-01 2 162696379 162696379 G T SLC4A10 Nonsense_Mutation p.E120* 0.30 TCGA-FU-A3HZ-01 2 162929996 162929996 T C DPP4 Missense_Mutation p.T3A 0.31 deleterious(0.01) benign(0.18) TCGA-FU-A3HZ-01 2 162999797 162999797 T G GCG 3'UTR 0.46 TCGA-FU-A3HZ-01 2 163008738 163008738 C T GCG 5'UTR 0.10 TCGA-FU-A3HZ-01 2 163124713 163124713 C A IFIH1 Missense_Mutation p.K897N 0.36 deleterious(0.04) benign(0.05) TCGA-FU-A3HZ-01 2 1635666 1635666 G T PXDN 3'UTR 0.50 TCGA-FU-A3HZ-01 2 164465616 164465616 T G FIGN 3'UTR 0.47 TCGA-FU-A3HZ-01 2 1652209 1652209 C T PXDN Missense_Mutation p.D1115N 0.35 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 2 1652811 1652811 T A PXDN Missense_Mutation p.N914I 0.08 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 2 1652918 1652918 G A PXDN Silent p.F878F 0.36 TCGA-FU-A3HZ-01 2 165754897 165754897 T G SLC38A11 3'UTR 0.52 TCGA-FU-A3HZ-01 2 166179831 166179831 G A SCN2A Missense_Mutation p.V613M 0.46 deleterious(0.01) possibly_damaging(0.822) TCGA-FU-A3HZ-01 2 166198953 166198953 T G SCN2A Missense_Mutation p.L846V 0.17 deleterious(0.02) possibly_damaging(0.46) TCGA-FU-A3HZ-01 2 166237192 166237192 C A SCN2A Missense_Mutation p.L1467I 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-FU-A3HZ-01 2 166246238 166246238 G T SCN2A Silent p.S1974S 0.35 TCGA-FU-A3HZ-01 2 166621549 166621549 A C GALNT3 Missense_Mutation p.F178C 0.43 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 2 169764214 169764214 C A G6PC2 Missense_Mutation p.D231E 0.41 deleterious(0.03) possibly_damaging(0.769) TCGA-FU-A3HZ-01 2 170063682 170063682 A G LRP2 Missense_Mutation p.V2183A 0.40 possibly_damaging(0.614) TCGA-FU-A3HZ-01 2 170082995 170082995 T C LRP2 Missense_Mutation p.I1777M 0.43 possibly_damaging(0.617) TCGA-FU-A3HZ-01 2 170666792 170666792 G T SSB Splice_Site p.X224_splice 0.42 TCGA-FU-A3HZ-01 2 171071299 171071299 C A MYO3B Missense_Mutation p.L163I 0.38 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 2 172954371 172954371 C A DLX1 3'UTR 0.67 TCGA-FU-A3HZ-01 2 175425735 175425735 A C WIPF1 3'UTR 0.33 TCGA-FU-A3HZ-01 2 175689189 175689189 G T CHN1 Missense_Mutation p.L229I 0.36 tolerated(0.09) probably_damaging(0.997) TCGA-FU-A3HZ-01 2 176043891 176043891 C A ATP5G3 Missense_Mutation p.D70Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 2 176794800 176794800 C A KIAA1715 Missense_Mutation p.E394D 0.42 tolerated(0.45) benign(0.005) TCGA-FU-A3HZ-01 2 176960106 176960106 C T HOXD13 3'UTR 0.39 TCGA-FU-A3HZ-01 2 176996514 176996514 C A HOXD8 3'UTR 0.46 TCGA-FU-A3HZ-01 2 176996520 176996520 T C HOXD8 3'UTR 0.36 TCGA-FU-A3HZ-01 2 178085197 178085197 A C HNRNPA3 3'Flank 0.24 TCGA-FU-A3HZ-01 2 17837352 17837352 G A VSNL1 3'UTR 0.19 TCGA-FU-A3HZ-01 2 178491086 178491086 T G PDE11A 3'UTR 0.50 TCGA-FU-A3HZ-01 2 178982797 178982797 G A RBM45 Missense_Mutation p.E147K 0.38 deleterious(0.01) possibly_damaging(0.827) TCGA-FU-A3HZ-01 2 179391859 179391859 G A TTN Silent p.D35952D 0.32 TCGA-FU-A3HZ-01 2 179396051 179396051 T C TTN Silent p.E35097E 0.15 TCGA-FU-A3HZ-01 2 179411050 179411050 G A TTN Nonsense_Mutation p.R31670* 0.31 TCGA-FU-A3HZ-01 2 179439245 179439245 G T TTN Missense_Mutation p.L23872I 0.35 TCGA-FU-A3HZ-01 2 179454957 179454957 G A TTN Nonsense_Mutation p.R20499* 0.40 TCGA-FU-A3HZ-01 2 179477702 179477702 C A TTN Missense_Mutation p.K16582N 0.40 TCGA-FU-A3HZ-01 2 179481337 179481337 C A TTN Nonsense_Mutation p.E16061* 0.50 TCGA-FU-A3HZ-01 2 179550275 179550275 A C TTN Missense_Mutation p.S10788A 0.48 TCGA-FU-A3HZ-01 2 179560599 179560599 G T TTN Silent p.V10400V 0.41 TCGA-FU-A3HZ-01 2 179579122 179579122 G T TTN Silent p.T8793T 0.37 TCGA-FU-A3HZ-01 2 179584978 179584978 G A TTN Silent p.F7797F 0.30 TCGA-FU-A3HZ-01 2 179594406 179594406 C A TTN Nonsense_Mutation p.E6192* 0.29 TCGA-FU-A3HZ-01 2 179595343 179595343 T C TTN Missense_Mutation p.T5973A 0.42 TCGA-FU-A3HZ-01 2 179595731 179595731 C A TTN Missense_Mutation p.K5887N 0.50 TCGA-FU-A3HZ-01 2 179599566 179599566 G A TTN Nonsense_Mutation p.R5029* 0.33 TCGA-FU-A3HZ-01 2 179606229 179606229 A C TTN Missense_Mutation p.S3911A 0.21 TCGA-FU-A3HZ-01 2 179612456 179612456 C T TTN Intron 0.50 TCGA-FU-A3HZ-01 2 179701359 179701359 A G CCDC141 Intron 0.45 TCGA-FU-A3HZ-01 2 179973822 179973822 A C SESTD1 3'UTR 0.32 TCGA-FU-A3HZ-01 2 182468577 182468577 C A CERKL Missense_Mutation p.K156N 0.32 tolerated(0.07) possibly_damaging(0.774) TCGA-FU-A3HZ-01 2 182795099 182795099 T G SSFA2 3'UTR 0.15 TCGA-FU-A3HZ-01 2 183699692 183699692 G A FRZB Missense_Mutation p.R288C 0.40 deleterious(0.01) probably_damaging(0.967) TCGA-FU-A3HZ-01 2 185802173 185802173 T G ZNF804A Missense_Mutation p.Y684D 0.19 tolerated(0.68) benign(0.002) TCGA-FU-A3HZ-01 2 187693353 187693353 T G ZSWIM2 Missense_Mutation p.K420N 0.37 tolerated(0.32) benign(0.021) TCGA-FU-A3HZ-01 2 190660497 190660497 G T PMS1 Missense_Mutation p.E45D 0.40 tolerated(0.06) benign(0.393) TCGA-FU-A3HZ-01 2 190738302 190738302 G T PMS1 Nonsense_Mutation p.E852* 0.29 TCGA-FU-A3HZ-01 2 191792187 191792187 C A GLS Missense_Mutation p.F468L 0.32 deleterious(0.05) benign(0.201) TCGA-FU-A3HZ-01 2 196636535 196636535 G T DNAH7 Missense_Mutation p.P3761Q 0.35 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 2 198480650 198480650 G A RFTN2 Silent p.F368F 0.54 TCGA-FU-A3HZ-01 2 199011513 199011513 G T PLCL1 Missense_Mutation p.D1039Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-FU-A3HZ-01 2 201362513 201362513 C A KCTD18 Missense_Mutation p.K208N 0.30 deleterious(0) benign(0.152) TCGA-FU-A3HZ-01 2 201485959 201485959 C T AOX1 Missense_Mutation p.A664V 0.21 tolerated(0.06) benign(0.033) TCGA-FU-A3HZ-01 2 201721630 201721630 G A CLK1 Missense_Mutation p.A346V 0.29 tolerated(0.65) benign(0.001) TCGA-FU-A3HZ-01 2 201750451 201750451 G T PPIL3 Silent p.V16V 0.30 TCGA-FU-A3HZ-01 2 202173902 202173902 G A ALS2CR12 Silent p.F249F 0.41 TCGA-FU-A3HZ-01 2 202356819 202356819 C A ALS2CR11 Missense_Mutation p.K1415N 0.36 tolerated(0.11) benign(0.007) TCGA-FU-A3HZ-01 2 202492840 202492840 C T TMEM237 Missense_Mutation p.R301Q 0.53 deleterious(0.03) probably_damaging(1) TCGA-FU-A3HZ-01 2 202901419 202901419 T C FZD7 3'UTR 0.41 TCGA-FU-A3HZ-01 2 202902884 202902884 C T FZD7 3'UTR 0.53 TCGA-FU-A3HZ-01 2 203160408 203160408 A C NOP58 Missense_Mutation p.N307H 0.59 deleterious(0) possibly_damaging(0.548) TCGA-FU-A3HZ-01 2 203395585 203395585 A G BMPR2 Missense_Mutation p.T346A 0.48 tolerated(0.19) benign(0.01) TCGA-FU-A3HZ-01 2 203431949 203431949 T C BMPR2 3'UTR 0.33 TCGA-FU-A3HZ-01 2 203432403 203432403 C A BMPR2 3'UTR 0.33 TCGA-FU-A3HZ-01 2 204016230 204016230 T G NBEAL1 Missense_Mutation p.N1806K 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-FU-A3HZ-01 2 204360053 204360053 T G RAPH1 Missense_Mutation p.E8D 0.30 probably_damaging(0.977) TCGA-FU-A3HZ-01 2 204738657 204738657 T G CTLA4 3'UTR 0.42 TCGA-FU-A3HZ-01 2 206661461 206661461 C T NRP2 3'UTR 0.40 TCGA-FU-A3HZ-01 2 207174601 207174601 G T ZDBF2 Missense_Mutation p.K1783N 0.36 tolerated(0.47) benign(0.403) TCGA-FU-A3HZ-01 2 207175201 207175201 G T ZDBF2 Missense_Mutation p.K1983N 0.33 tolerated(0.1) benign(0.403) TCGA-FU-A3HZ-01 2 207175683 207175683 G T ZDBF2 Missense_Mutation p.R2144I 0.55 deleterious(0) benign(0.007) TCGA-FU-A3HZ-01 2 207435488 207435488 A C ADAM23 Missense_Mutation p.N507H 0.30 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 2 207482611 207482611 C A ADAM23 3'UTR 0.33 TCGA-FU-A3HZ-01 2 207823079 207823079 C A CPO Missense_Mutation p.H108N 0.23 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 2 20838179 20838179 A G HS1BP3 Intron 0.31 TCGA-FU-A3HZ-01 2 208627651 208627651 A G FZD5 3'UTR 0.19 TCGA-FU-A3HZ-01 2 20901338 20901338 A C C2orf43 Missense_Mutation p.L260V 0.10 deleterious(0) probably_damaging(0.973) TCGA-FU-A3HZ-01 2 209138439 209138439 C A PIKFYVE Silent p.R102R 0.33 TCGA-FU-A3HZ-01 2 210559578 210559578 C T MAP2 Missense_Mutation p.T895I 0.34 deleterious_low_confidence(0.03) benign(0.006) TCGA-FU-A3HZ-01 2 210594630 210594630 G T MAP2 Missense_Mutation p.A1738S 0.21 tolerated(0.12) probably_damaging(0.961) TCGA-FU-A3HZ-01 2 210940471 210940471 C A KANSL1L Missense_Mutation p.E520D 0.40 tolerated(0.49) possibly_damaging(0.516) TCGA-FU-A3HZ-01 2 211053739 211053739 A G ACADL Silent p.G413G 0.17 TCGA-FU-A3HZ-01 2 211167231 211167231 G T MYL1 Missense_Mutation p.F47L 0.60 tolerated(0.08) benign(0.012) TCGA-FU-A3HZ-01 2 211447406 211447406 G A CPS1 Silent p.Q204Q 0.33 TCGA-FU-A3HZ-01 2 212243328 212243328 A C ERBB4 3'UTR 0.25 TCGA-FU-A3HZ-01 2 21232739 21232739 A C APOB Missense_Mutation p.I2334S 0.16 possibly_damaging(0.617) TCGA-FU-A3HZ-01 2 21233079 21233079 T G APOB Missense_Mutation p.N2221H 0.38 benign(0.002) TCGA-FU-A3HZ-01 2 212495258 212495258 T C ERBB4 Missense_Mutation p.T670A 0.24 tolerated(0.65) benign(0.004) TCGA-FU-A3HZ-01 2 215914364 215914364 T C ABCA12 Missense_Mutation p.K227E 0.39 tolerated(0.8) benign(0) TCGA-FU-A3HZ-01 2 216211538 216211538 A G ATIC Silent p.G459G 0.39 TCGA-FU-A3HZ-01 2 216235148 216235148 A G FN1 Missense_Mutation p.V2241A 0.19 deleterious(0.01) possibly_damaging(0.597) TCGA-FU-A3HZ-01 2 218724392 218724392 T A TNS1 Intron 0.41 TCGA-FU-A3HZ-01 2 218938012 218938012 G T RUFY4 Nonsense_Mutation p.E145* 0.48 TCGA-FU-A3HZ-01 2 219674429 219674429 G A CYP27A1 Missense_Mutation p.D129N 0.13 deleterious(0.04) benign(0.094) TCGA-FU-A3HZ-01 2 219920323 219920323 T C IHH Missense_Mutation p.D281G 0.09 tolerated(0.27) benign(0.089) TCGA-FU-A3HZ-01 2 220291227 220291227 C T DES 3'UTR 0.53 TCGA-FU-A3HZ-01 2 220432576 220432576 C T OBSL1 Silent p.E466E 0.33 TCGA-FU-A3HZ-01 2 223064921 223064921 A C PAX3 3'UTR 0.33 TCGA-FU-A3HZ-01 2 224462577 224462577 G A SCG2 Missense_Mutation p.S475L 0.25 tolerated(0.25) benign(0.007) TCGA-FU-A3HZ-01 2 224746785 224746785 T G WDFY1 Missense_Mutation p.H313P 0.33 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 2 225338472 225338472 A G CUL3 3'UTR 0.28 TCGA-FU-A3HZ-01 2 225670166 225670166 T C DOCK10 Missense_Mutation p.T1299A 0.33 tolerated(0.78) benign(0.059) TCGA-FU-A3HZ-01 2 226446723 226446723 G A NYAP2 Missense_Mutation p.R197Q 0.21 deleterious(0) probably_damaging(0.946) TCGA-FU-A3HZ-01 2 228420266 228420266 C A AGFG1 3'Flank 0.31 TCGA-FU-A3HZ-01 2 231326077 231326077 T G SP100 Silent p.V307V 0.50 TCGA-FU-A3HZ-01 2 231741620 231741620 G A ITM2C Missense_Mutation p.E167K 0.46 tolerated(0.07) probably_damaging(0.999) TCGA-FU-A3HZ-01 2 231789928 231789928 C A GPR55 5'UTR 0.49 TCGA-FU-A3HZ-01 2 231973376 231973376 C T HTR2B Missense_Mutation p.R434Q 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.73) TCGA-FU-A3HZ-01 2 234581228 234581228 A G UGT1A9 Silent p.E216E 0.15 TCGA-FU-A3HZ-01 2 234678346 234678346 T G UGT1A10 Intron 0.30 TCGA-FU-A3HZ-01 2 234775110 234775110 A G MSL3P1 RNA 0.38 TCGA-FU-A3HZ-01 2 234851424 234851424 T G TRPM8 Intron 0.32 TCGA-FU-A3HZ-01 2 234869596 234869596 G A TRPM8 Silent p.K513K 0.44 TCGA-FU-A3HZ-01 2 238285451 238285451 G T COL6A3 Missense_Mutation p.L1012I 0.32 probably_damaging(0.965) TCGA-FU-A3HZ-01 2 238725989 238725989 G T RBM44 Missense_Mutation p.V144F 0.53 tolerated(0.07) benign(0.394) TCGA-FU-A3HZ-01 2 241664796 241664796 A C KIF1A Missense_Mutation p.V1383G 0.40 deleterious(0) benign(0.343) TCGA-FU-A3HZ-01 2 241818142 241818142 C T AGXT Silent p.I361I 0.38 TCGA-FU-A3HZ-01 2 242174571 242174571 G A HDLBP Missense_Mutation p.R1037C 0.50 deleterious(0) probably_damaging(0.986) TCGA-FU-A3HZ-01 2 242813925 242813925 A C CXXC11 Missense_Mutation p.H73P 0.06 deleterious(0.01) probably_damaging(0.939) TCGA-FU-A3HZ-01 2 24369682 24369682 G T FAM228B Missense_Mutation p.R169I 0.26 deleterious(0.01) probably_damaging(1) TCGA-FU-A3HZ-01 2 24509100 24509100 G T ITSN2 Missense_Mutation p.S615Y 0.22 tolerated(0.26) unknown(0) TCGA-FU-A3HZ-01 2 24993129 24993129 T G NCOA1 3'UTR 0.38 TCGA-FU-A3HZ-01 2 25022592 25022592 G A CENPO Missense_Mutation p.R32H 0.43 tolerated(0.19) benign(0.003) TCGA-FU-A3HZ-01 2 25387631 25387631 G A POMC Missense_Mutation p.S4L 0.27 tolerated_low_confidence(0.54) benign(0.003) TCGA-FU-A3HZ-01 2 25965734 25965734 C T ASXL2 Missense_Mutation p.A1158T 0.22 tolerated(0.15) benign(0.022) TCGA-FU-A3HZ-01 2 26677530 26677530 G A DRC1 Silent p.P645P 0.22 TCGA-FU-A3HZ-01 2 26863416 26863416 C A CIB4 Missense_Mutation p.R25I 0.29 deleterious(0) benign(0.215) TCGA-FU-A3HZ-01 2 27235801 27235801 A C MAPRE3 Intron 0.37 TCGA-FU-A3HZ-01 2 27305048 27305048 C T EMILIN1 Silent p.S203S 0.10 TCGA-FU-A3HZ-01 2 27354543 27354563 GTGAGGGCAACAGATGCAGCT - PREB In_Frame_Del p.Q379_S385del 0.23 TCGA-FU-A3HZ-01 2 27355999 27355999 C T PREB Missense_Mutation p.V178I 0.39 tolerated(0.65) benign(0.003) TCGA-FU-A3HZ-01 2 27480103 27480103 G A SLC30A3 Silent p.V232V 0.45 TCGA-FU-A3HZ-01 2 27917701 27917701 T G SLC4A1AP 3'UTR 0.07 TCGA-FU-A3HZ-01 2 27930929 27930929 C T AC074091.13 Missense_Mutation p.R35Q 0.41 benign(0.417) TCGA-FU-A3HZ-01 2 32249232 32249232 T G DPY30 3'UTR 0.48 TCGA-FU-A3HZ-01 2 32399192 32399192 T C SLC30A6 Missense_Mutation p.W51R 0.36 deleterious(0.02) possibly_damaging(0.614) TCGA-FU-A3HZ-01 2 32694554 32694554 G T BIRC6 Missense_Mutation p.K2073N 0.37 probably_damaging(0.915) TCGA-FU-A3HZ-01 2 32843221 32843221 G T BIRC6 3'UTR 0.20 TCGA-FU-A3HZ-01 2 33335744 33335744 T G LTBP1 Missense_Mutation p.I320S 0.26 tolerated(0.39) benign(0.028) TCGA-FU-A3HZ-01 2 3428348 3428348 C T TRAPPC12 Missense_Mutation p.A444V 0.32 tolerated(0.05) probably_damaging(0.977) TCGA-FU-A3HZ-01 2 36982179 36982179 G T VIT Nonsense_Mutation p.E131* 0.48 TCGA-FU-A3HZ-01 2 38800559 38800559 A G HNRNPLL Silent p.G290G 0.33 TCGA-FU-A3HZ-01 2 38971860 38971860 T G SRSF7 3'UTR 0.56 TCGA-FU-A3HZ-01 2 38972082 38972082 T G SRSF7 3'UTR 0.37 TCGA-FU-A3HZ-01 2 39156914 39156914 A C ARHGEF33 Missense_Mutation p.Q102P 0.65 deleterious(0.01) possibly_damaging(0.75) TCGA-FU-A3HZ-01 2 39213450 39213450 A G SOS1 Missense_Mutation p.S1173P 0.44 tolerated_low_confidence(0.29) benign(0.343) TCGA-FU-A3HZ-01 2 39249758 39249758 C A SOS1 Missense_Mutation p.G604V 0.18 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 2 43800129 43800129 G C THADA Missense_Mutation p.Q578E 0.33 tolerated(0.44) benign(0.001) TCGA-FU-A3HZ-01 2 44040171 44040171 A C ABCG5 3'UTR 0.36 TCGA-FU-A3HZ-01 2 44176759 44176759 C T LRPPRC Missense_Mutation p.E573K 0.56 tolerated(0.63) benign(0.003) TCGA-FU-A3HZ-01 2 46612032 46612032 T G EPAS1 3'UTR 0.27 TCGA-FU-A3HZ-01 2 48032840 48032840 G T MSH6 Nonsense_Mutation p.E1214* 0.33 TCGA-FU-A3HZ-01 2 48059963 48059963 A C FBXO11 Missense_Mutation p.I366M 0.09 tolerated(0.12) possibly_damaging(0.543) TCGA-FU-A3HZ-01 2 48808733 48808733 G T STON1-GTF2A1L Nonsense_Mutation p.E321* 0.42 TCGA-FU-A3HZ-01 2 48915735 48915735 G T LHCGR Missense_Mutation p.L401I 0.57 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 2 49210085 49210085 C A FSHR Missense_Mutation p.D212Y 0.18 tolerated(0.07) benign(0.032) TCGA-FU-A3HZ-01 2 50318533 50318533 G A NRXN1 Missense_Mutation p.R1256C 0.38 deleterious(0) probably_damaging(0.994) TCGA-FU-A3HZ-01 2 54080632 54080632 T C GPR75 Missense_Mutation p.K421R 0.38 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 2 54154547 54154547 C A PSME4 Missense_Mutation p.R526I 0.29 tolerated(0.17) benign(0.058) TCGA-FU-A3HZ-01 2 54587518 54587518 C A C2orf73 Missense_Mutation p.S228Y 0.70 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 2 55403113 55403113 T C CLHC1 Missense_Mutation p.E525G 0.30 deleterious(0) probably_damaging(0.927) TCGA-FU-A3HZ-01 2 55906874 55906874 C A PNPT1 Nonsense_Mutation p.E208* 0.42 TCGA-FU-A3HZ-01 2 61310442 61310442 T G KIAA1841 Missense_Mutation p.F295V 0.50 tolerated(0.09) possibly_damaging(0.54) TCGA-FU-A3HZ-01 2 61344674 61344674 C T KIAA1841 Silent p.D646D 0.53 TCGA-FU-A3HZ-01 2 61413945 61413945 A G AHSA2 3'UTR 0.18 TCGA-FU-A3HZ-01 2 62450998 62450998 T - B3GNT2 3'UTR 0.24 TCGA-FU-A3HZ-01 2 63169966 63169966 T G EHBP1 Missense_Mutation p.F468L 0.08 tolerated(0.21) probably_damaging(0.929) TCGA-FU-A3HZ-01 2 68690969 68690969 C A FBXO48 3'UTR 0.54 TCGA-FU-A3HZ-01 2 69040466 69040466 G A ARHGAP25 Missense_Mutation p.R241Q 0.50 deleterious(0) probably_damaging(0.923) TCGA-FU-A3HZ-01 2 69172426 69172426 G T GKN2 3'UTR 0.32 TCGA-FU-A3HZ-01 2 7036006 7036006 A G RSAD2 Missense_Mutation p.E340G 0.50 deleterious(0.01) probably_damaging(0.917) TCGA-FU-A3HZ-01 2 71187139 71187139 C T ATP6V1B1 Silent p.D172D 0.44 TCGA-FU-A3HZ-01 2 71829914 71829914 G T DYSF Missense_Mutation p.E1312D 0.38 tolerated(0.63) benign(0.001) TCGA-FU-A3HZ-01 2 73485913 73485913 A G FBXO41 3'UTR 0.14 TCGA-FU-A3HZ-01 2 73680465 73680465 A C ALMS1 Missense_Mutation p.N2270H 0.31 probably_damaging(0.992) TCGA-FU-A3HZ-01 2 74709300 74709300 T G CCDC142 Missense_Mutation p.H222P 0.16 tolerated(0.18) benign(0.366) TCGA-FU-A3HZ-01 2 74755126 74755126 G A AUP1 Missense_Mutation p.R227C 0.18 deleterious(0) possibly_damaging(0.471) TCGA-FU-A3HZ-01 2 84800608 84800608 A G DNAH6 Silent p.A607A 0.31 TCGA-FU-A3HZ-01 2 85023530 85023530 T G DNAH6 Missense_Mutation p.D3780E 0.21 tolerated(0.34) benign(0.014) TCGA-FU-A3HZ-01 2 85777676 85777676 A G GGCX Splice_Site p.X695_splice 0.42 TCGA-FU-A3HZ-01 2 85818882 85818882 C T VAMP5 Missense_Mutation p.A13V 0.42 tolerated(0.19) probably_damaging(0.994) TCGA-FU-A3HZ-01 2 86831408 86831408 G A RNF103 Missense_Mutation p.S539L 0.43 tolerated(0.62) benign(0.173) TCGA-FU-A3HZ-01 2 8824203 8824203 C A ID2 3'UTR 0.19 TCGA-FU-A3HZ-01 2 88411407 88411407 G A SMYD1 3'UTR 0.50 TCGA-FU-A3HZ-01 2 89103871 89103871 T - ANKRD36BP2 RNA 0.24 TCGA-FU-A3HZ-01 2 89278240 89278240 G T IGKV3-7 Missense_Mutation p.S32Y 0.31 deleterious(0.03) benign(0.125) TCGA-FU-A3HZ-01 2 95488761 95488761 C A ANKRD20A8P RNA 0.38 TCGA-FU-A3HZ-01 2 95847075 95847075 C A ZNF2 Missense_Mutation p.L168I 0.42 tolerated(0.41) benign(0.004) TCGA-FU-A3HZ-01 2 96076627 96076627 G A FAHD2A Missense_Mutation p.A180T 0.09 tolerated(0.15) benign(0.155) TCGA-FU-A3HZ-01 2 96525724 96525724 G A ANKRD36C Nonsense_Mutation p.R288* 0.34 TCGA-FU-A3HZ-01 2 96583646 96583646 C T ANKRD36C Silent p.S768S 0.23 TCGA-FU-A3HZ-01 2 96652917 96652917 C T ANKRD36C Missense_Mutation p.E79K 0.17 tolerated(0.1) possibly_damaging(0.631) TCGA-FU-A3HZ-01 2 96687737 96687737 T G GPAT2 3'UTR 0.56 TCGA-FU-A3HZ-01 2 96698050 96698050 G A GPAT2 Nonsense_Mutation p.R20* 0.16 TCGA-FU-A3HZ-01 2 96918947 96918947 T C TMEM127 3'UTR 0.25 TCGA-FU-A3HZ-01 2 99804685 99804685 C T MRPL30 Missense_Mutation p.R33C 0.24 tolerated(0.08) benign(0.082) TCGA-FU-A3HZ-01 2 99907879 99907879 G A LYG1 Missense_Mutation p.R52C 0.28 tolerated(0.07) benign(0.187) TCGA-FU-A3HZ-01 3 100084316 100084316 A C TOMM70A 3'UTR 0.33 TCGA-FU-A3HZ-01 3 100511564 100511564 C T ABI3BP Missense_Mutation p.R646Q 0.43 tolerated(0.13) benign(0.02) TCGA-FU-A3HZ-01 3 100605128 100605128 C A ABI3BP Missense_Mutation p.K174N 0.50 deleterious(0) benign(0.403) TCGA-FU-A3HZ-01 3 101311687 101311687 G A PCNP 3'UTR 0.35 TCGA-FU-A3HZ-01 3 101476538 101476538 C T CEP97 Missense_Mutation p.A363V 0.41 tolerated(0.12) benign(0.097) TCGA-FU-A3HZ-01 3 10443974 10443974 G A ATP2B2 Silent p.I152I 0.33 TCGA-FU-A3HZ-01 3 107763025 107763025 T G CD47 3'Flank 0.30 TCGA-FU-A3HZ-01 3 108172877 108172877 T G MYH15 Missense_Mutation p.K812T 0.25 tolerated(0.08) benign(0.038) TCGA-FU-A3HZ-01 3 108205277 108205277 G A MYH15 Missense_Mutation p.A343V 0.35 deleterious(0.03) benign(0.014) TCGA-FU-A3HZ-01 3 108355553 108355553 T G DZIP3 Missense_Mutation p.L337V 0.38 tolerated(0.13) probably_damaging(0.996) TCGA-FU-A3HZ-01 3 108403096 108403096 G T DZIP3 Nonsense_Mutation p.E973* 0.30 TCGA-FU-A3HZ-01 3 10960013 10960013 G A SLC6A11 Splice_Site p.X332_splice 0.33 TCGA-FU-A3HZ-01 3 110837539 110837539 C A PVRL3 Missense_Mutation p.S180Y 0.18 deleterious(0.02) possibly_damaging(0.686) TCGA-FU-A3HZ-01 3 111439761 111439761 T G PLCXD2 Intron 0.50 TCGA-FU-A3HZ-01 3 111603090 111603090 T G PHLDB2 Missense_Mutation p.S56A 0.17 tolerated_low_confidence(0.14) benign(0.012) TCGA-FU-A3HZ-01 3 111681103 111681103 T C PHLDB2 Silent p.D1007D 0.44 TCGA-FU-A3HZ-01 3 111694766 111694766 T C PHLDB2 3'UTR 0.29 TCGA-FU-A3HZ-01 3 111719696 111719696 T G TAGLN3 Silent p.A86A 0.43 TCGA-FU-A3HZ-01 3 112534815 112534815 G T CD200R1L Missense_Mutation p.L271I 0.54 deleterious_low_confidence(0) benign(0.026) TCGA-FU-A3HZ-01 3 112714067 112714067 A G GTPBP8 Missense_Mutation p.E174G 0.44 tolerated(0.05) benign(0.049) TCGA-FU-A3HZ-01 3 112724511 112724511 T G C3orf17 Missense_Mutation p.N526H 0.29 tolerated(0.12) benign(0.053) TCGA-FU-A3HZ-01 3 112935073 112935073 C A BOC 5'UTR 0.43 TCGA-FU-A3HZ-01 3 113345005 113345005 C T SIDT1 Silent p.F788F 0.38 TCGA-FU-A3HZ-01 3 113655209 113655209 G A GRAMD1C Missense_Mutation p.R518Q 0.21 deleterious(0) probably_damaging(0.91) TCGA-FU-A3HZ-01 3 113658832 113658832 G T GRAMD1C Missense_Mutation p.E597D 0.67 tolerated(0.18) benign(0.018) TCGA-FU-A3HZ-01 3 113665115 113665115 A C GRAMD1C 3'UTR 0.19 TCGA-FU-A3HZ-01 3 119120696 119120696 G A ARHGAP31 Missense_Mutation p.R366Q 0.50 deleterious(0.02) possibly_damaging(0.714) TCGA-FU-A3HZ-01 3 119449158 119449158 C T MAATS1 Missense_Mutation p.R318W 0.38 tolerated(0.18) possibly_damaging(0.764) TCGA-FU-A3HZ-01 3 119900017 119900017 G T GPR156 Silent p.I296I 0.27 TCGA-FU-A3HZ-01 3 121209199 121209199 C T POLQ Missense_Mutation p.R860Q 0.38 tolerated(0.07) benign(0.059) TCGA-FU-A3HZ-01 3 121409629 121409629 C T GOLGB1 Missense_Mutation p.R2861Q 0.48 possibly_damaging(0.843) TCGA-FU-A3HZ-01 3 121413301 121413301 T C GOLGB1 Silent p.Q2023Q 0.29 TCGA-FU-A3HZ-01 3 12208773 12208773 C T SYN2 RNA 0.42 TCGA-FU-A3HZ-01 3 122418266 122418266 G A PARP14 Missense_Mutation p.D289N 0.25 tolerated(0.52) benign(0.003) TCGA-FU-A3HZ-01 3 122478169 122478169 A G HSPBAP1 Silent p.N157N 0.06 TCGA-FU-A3HZ-01 3 123051434 123051434 C T ADCY5 Missense_Mutation p.A499T 0.54 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 3 124482543 124482543 T G ITGB5 Missense_Mutation p.K776T 0.16 tolerated(0.07) benign(0.155) TCGA-FU-A3HZ-01 3 124946640 124946640 A C ZNF148 3'UTR 0.14 TCGA-FU-A3HZ-01 3 125271449 125271449 G A OSBPL11 Silent p.D410D 0.33 TCGA-FU-A3HZ-01 3 125647651 125647651 A C ALG1L 3'Flank 0.33 TCGA-FU-A3HZ-01 3 126217012 126217012 G T UROC1 Missense_Mutation p.D500E 0.33 tolerated(0.41) possibly_damaging(0.721) TCGA-FU-A3HZ-01 3 126382235 126382235 C T NUP210P1 RNA 0.09 TCGA-FU-A3HZ-01 3 128293003 128293003 T G C3orf27 5'UTR 0.14 TCGA-FU-A3HZ-01 3 129155555 129155555 T G MBD4 Missense_Mutation p.K311T 0.47 tolerated(0.36) benign(0) TCGA-FU-A3HZ-01 3 129234393 129234393 C T IFT122 Silent p.N1123N 0.37 TCGA-FU-A3HZ-01 3 129369846 129369846 G A TMCC1 3'UTR 0.38 TCGA-FU-A3HZ-01 3 12950878 12950878 A C IQSEC1 Missense_Mutation p.L839V 0.42 tolerated(0.19) benign(0.101) TCGA-FU-A3HZ-01 3 130190558 130190558 A G COL6A5 Missense_Mutation p.E2536G 0.41 tolerated(0.26) benign(0.001) TCGA-FU-A3HZ-01 3 130287239 130287239 A G COL6A6 Missense_Mutation p.D731G 0.31 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 3 130300845 130300845 A G COL6A6 Silent p.L1301L 0.53 TCGA-FU-A3HZ-01 3 130424600 130424600 T G PIK3R4 Missense_Mutation p.T913P 0.08 tolerated(0.31) benign(0) TCGA-FU-A3HZ-01 3 130720241 130720241 G A ATP2C1 Intron 0.38 TCGA-FU-A3HZ-01 3 132349345 132349345 G T ACAD11 Missense_Mutation p.S300Y 0.50 tolerated(1) benign(0.01) TCGA-FU-A3HZ-01 3 132395389 132395389 T G UBA5 3'UTR 0.19 TCGA-FU-A3HZ-01 3 134197240 134197240 G A ANAPC13 3'UTR 0.36 TCGA-FU-A3HZ-01 3 137729205 137729205 C T CLDN18 Silent p.Y46Y 0.56 TCGA-FU-A3HZ-01 3 137960643 137960643 C T ARMC8 Nonsense_Mutation p.R272* 0.38 TCGA-FU-A3HZ-01 3 138724304 138724304 A C PRR23A 3'UTR 0.26 TCGA-FU-A3HZ-01 3 140122483 140122483 C T CLSTN2 Missense_Mutation p.A82V 0.27 deleterious(0) benign(0.094) TCGA-FU-A3HZ-01 3 14223147 14223147 C T LSM3 Nonsense_Mutation p.R37* 0.48 TCGA-FU-A3HZ-01 3 142522890 142522890 G T TRPC1 Missense_Mutation p.R610I 0.30 tolerated(0.07) benign(0.159) TCGA-FU-A3HZ-01 3 143710890 143710890 G T C3orf58 3'UTR 0.44 TCGA-FU-A3HZ-01 3 14558622 14558622 C T GRIP2 RNA 0.24 TCGA-FU-A3HZ-01 3 14693368 14693368 G A CCDC174 Missense_Mutation p.D9N 0.37 tolerated(0.31) possibly_damaging(0.811) TCGA-FU-A3HZ-01 3 147132795 147132795 C A ZIC1 3'UTR 0.35 TCGA-FU-A3HZ-01 3 147132966 147132966 G T ZIC1 3'UTR 0.32 TCGA-FU-A3HZ-01 3 14770064 14770064 T C C3orf20 Silent p.S603S 0.25 TCGA-FU-A3HZ-01 3 148458860 148458860 G T AGTR1 Missense_Mutation p.R13I 0.31 tolerated(0.16) benign(0.179) TCGA-FU-A3HZ-01 3 148749201 148749201 A C HLTF 3'UTR 0.44 TCGA-FU-A3HZ-01 3 148891462 148891462 G T CP 3'UTR 0.33 TCGA-FU-A3HZ-01 3 15045440 15045440 C T NR2C2 Missense_Mutation p.R7C 0.48 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-FU-A3HZ-01 3 151056222 151056222 G T P2RY12 Missense_Mutation p.L138I 0.36 tolerated(0.37) possibly_damaging(0.688) TCGA-FU-A3HZ-01 3 151154914 151154914 T G IGSF10 Missense_Mutation p.I2479L 0.28 tolerated(0.14) benign(0.042) TCGA-FU-A3HZ-01 3 151155421 151155421 C T IGSF10 Missense_Mutation p.D2310N 0.12 tolerated(0.06) benign(0.178) TCGA-FU-A3HZ-01 3 151158441 151158441 A C IGSF10 Intron 0.44 TCGA-FU-A3HZ-01 3 151165248 151165248 C A IGSF10 Nonsense_Mutation p.E841* 0.40 TCGA-FU-A3HZ-01 3 154866381 154866381 A C MME Missense_Mutation p.N514H 0.40 tolerated(0.07) probably_damaging(0.971) TCGA-FU-A3HZ-01 3 15672995 15672995 T G BTD Intron 0.48 TCGA-FU-A3HZ-01 3 15686343 15686343 A C BTD Missense_Mutation p.N327T 0.23 tolerated(1) benign(0.002) TCGA-FU-A3HZ-01 3 160166571 160166571 T G TRIM59 5'UTR 0.29 TCGA-FU-A3HZ-01 3 164714322 164714322 C A SI Splice_Site p.X1564_splice 0.58 TCGA-FU-A3HZ-01 3 164732962 164732962 C A SI Missense_Mutation p.Q1316H 0.35 deleterious(0.01) possibly_damaging(0.811) TCGA-FU-A3HZ-01 3 165548614 165548614 G A BCHE Nonsense_Mutation p.R70* 0.37 TCGA-FU-A3HZ-01 3 170185087 170185087 C A SLC7A14 Missense_Mutation p.S691I 0.28 deleterious(0.01) benign(0.242) TCGA-FU-A3HZ-01 3 170802051 170802051 G A TNIK Missense_Mutation p.S1021L 0.39 deleterious(0) probably_damaging(0.98) TCGA-FU-A3HZ-01 3 172472404 172472404 G T ECT2 Missense_Mutation p.E28D 0.19 deleterious_low_confidence(0.05) benign(0.012) TCGA-FU-A3HZ-01 3 173999720 173999720 T G NLGN1 3'UTR 0.47 TCGA-FU-A3HZ-01 3 174000302 174000302 C T NLGN1 3'UTR 0.33 TCGA-FU-A3HZ-01 3 176739479 176739479 C A TBL1XR1 3'UTR 0.41 TCGA-FU-A3HZ-01 3 176750766 176750766 T G TBL1XR1 Missense_Mutation p.N470T 0.47 deleterious(0.02) benign(0.297) TCGA-FU-A3HZ-01 3 176763937 176763937 T G TBL1XR1 Missense_Mutation p.Q302P 0.29 deleterious(0) probably_damaging(0.974) TCGA-FU-A3HZ-01 3 178785493 178785493 T G ZMAT3 Silent p.S16S 0.19 TCGA-FU-A3HZ-01 3 178921533 178921533 C A PIK3CA Missense_Mutation p.L339I 0.44 tolerated(0.23) benign(0.104) TCGA-FU-A3HZ-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.40 deleterious(0.04) probably_damaging(0.96) TCGA-FU-A3HZ-01 3 179593175 179593175 G A PEX5L Missense_Mutation p.S199F 0.45 deleterious_low_confidence(0.02) benign(0.077) TCGA-FU-A3HZ-01 3 181431744 181431744 T G SOX2 3'UTR 0.21 TCGA-FU-A3HZ-01 3 182554378 182554378 T C ATP11B Intron 0.62 TCGA-FU-A3HZ-01 3 182575668 182575668 C A ATP11B Nonsense_Mutation p.S285* 0.21 TCGA-FU-A3HZ-01 3 182933869 182933869 C A MCF2L2 Missense_Mutation p.R795I 0.56 tolerated(0.34) benign(0.045) TCGA-FU-A3HZ-01 3 182989117 182989117 A G B3GNT5 3'UTR 0.26 TCGA-FU-A3HZ-01 3 183400257 183400257 G T KLHL24 3'UTR 0.35 TCGA-FU-A3HZ-01 3 183638387 183638387 G A ABCC5 3'UTR 0.53 TCGA-FU-A3HZ-01 3 183772526 183772526 A C HTR3C Missense_Mutation p.T29P 0.38 deleterious(0.03) benign(0.033) TCGA-FU-A3HZ-01 3 183904618 183904618 C T ABCF3 Silent p.L86L 0.40 TCGA-FU-A3HZ-01 3 183955029 183955029 C T VWA5B2 Missense_Mutation p.R517W 0.28 deleterious(0) probably_damaging(0.96) TCGA-FU-A3HZ-01 3 184043121 184043121 G A EIF4G1 Missense_Mutation p.R981H 0.32 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 3 184055357 184055357 G T FAM131A 5'UTR 0.41 TCGA-FU-A3HZ-01 3 184082932 184082932 C T POLR2H Missense_Mutation p.R57W 0.48 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 3 184090111 184090111 A C THPO 3'UTR 0.30 TCGA-FU-A3HZ-01 3 185232243 185232243 T G LIPH Missense_Mutation p.K350T 0.26 deleterious(0.03) possibly_damaging(0.846) TCGA-FU-A3HZ-01 3 185361820 185361820 C A IGF2BP2 3'UTR 0.50 TCGA-FU-A3HZ-01 3 186395339 186395339 A G HRG Silent p.G415G 0.08 TCGA-FU-A3HZ-01 3 186507161 186507161 A C EIF4A2 3'UTR 0.19 TCGA-FU-A3HZ-01 3 186570919 186570919 G A ADIPOQ Silent p.G24G 0.41 TCGA-FU-A3HZ-01 3 189613845 189613845 T C TP63 3'UTR 0.55 TCGA-FU-A3HZ-01 3 189706770 189706770 C T LEPREL1 Missense_Mutation p.R294H 0.48 tolerated(0.3) benign(0.049) TCGA-FU-A3HZ-01 3 191861465 191861465 C A FGF12 3'UTR 0.67 TCGA-FU-A3HZ-01 3 192515635 192515635 T G MB21D2 3'UTR 0.57 TCGA-FU-A3HZ-01 3 193081925 193081925 C A ATP13A5 Nonsense_Mutation p.E70* 0.18 TCGA-FU-A3HZ-01 3 193171950 193171950 C T ATP13A4 Missense_Mutation p.R656Q 0.37 deleterious(0) probably_damaging(0.989) TCGA-FU-A3HZ-01 3 194079313 194079313 T C LRRC15 3'UTR 0.38 TCGA-FU-A3HZ-01 3 194079567 194079567 A C LRRC15 3'UTR 0.50 TCGA-FU-A3HZ-01 3 195426281 195426281 T G MIR570 RNA 0.19 TCGA-FU-A3HZ-01 3 195517019 195517019 C A MUC4 Nonsense_Mutation p.E478* 0.31 TCGA-FU-A3HZ-01 3 196311048 196311048 T A FBXO45 Silent p.T240T 0.30 TCGA-FU-A3HZ-01 3 197602611 197602611 T G LRCH3 3'Flank 0.43 TCGA-FU-A3HZ-01 3 197618337 197618337 C A IQCG Nonsense_Mutation p.E393* 0.11 TCGA-FU-A3HZ-01 3 19925929 19925929 C A EFHB Missense_Mutation p.E704D 0.28 tolerated(0.13) benign(0.008) TCGA-FU-A3HZ-01 3 20043508 20043508 C A PP2D1 Missense_Mutation p.R35I 0.36 deleterious(0.02) possibly_damaging(0.541) TCGA-FU-A3HZ-01 3 20202665 20202665 G A SGOL1 Nonsense_Mutation p.R540* 0.50 TCGA-FU-A3HZ-01 3 25636077 25636077 A C RARB Missense_Mutation p.K353T 0.46 deleterious(0) probably_damaging(0.983) TCGA-FU-A3HZ-01 3 27297822 27297822 T G NEK10 Missense_Mutation p.K685N 0.25 deleterious(0.01) possibly_damaging(0.826) TCGA-FU-A3HZ-01 3 28378263 28378263 C T AZI2 Missense_Mutation p.D185N 0.37 tolerated(1) benign(0.003) TCGA-FU-A3HZ-01 3 29323080 29323080 A G RBMS3 5'UTR 0.52 TCGA-FU-A3HZ-01 3 29781258 29781258 T G RBMS3 Missense_Mutation p.I149M 0.36 tolerated(0.05) possibly_damaging(0.601) TCGA-FU-A3HZ-01 3 29781260 29781260 C A RBMS3 Missense_Mutation p.S150Y 0.38 tolerated(0.13) probably_damaging(0.999) TCGA-FU-A3HZ-01 3 32207342 32207342 C T GPD1L Silent p.Y332Y 0.10 TCGA-FU-A3HZ-01 3 32801030 32801030 T G CNOT10 Missense_Mutation p.L619R 0.14 deleterious(0) probably_damaging(0.984) TCGA-FU-A3HZ-01 3 33109756 33109756 C A GLB1 Missense_Mutation p.E141D 0.46 tolerated(0.18) benign(0.003) TCGA-FU-A3HZ-01 3 33866819 33866819 A T PDCD6IP Missense_Mutation p.L201F 0.31 tolerated(0.54) benign(0.056) TCGA-FU-A3HZ-01 3 33906839 33906839 G A PDCD6IP Silent p.A788A 0.29 TCGA-FU-A3HZ-01 3 35785388 35785388 C T ARPP21 Missense_Mutation p.R656W 0.51 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 3 37367213 37367213 G A GOLGA4 Missense_Mutation p.R1301K 0.24 benign(0.012) TCGA-FU-A3HZ-01 3 38045873 38045873 C A VILL Missense_Mutation p.L645M 0.41 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 3 38524918 38524918 A G ACVR2B 3'UTR 0.62 TCGA-FU-A3HZ-01 3 38532139 38532139 C A ACVR2B 3'UTR 0.40 TCGA-FU-A3HZ-01 3 38533831 38533831 A C ACVR2B 3'UTR 0.48 TCGA-FU-A3HZ-01 3 3888399 3888399 A C LRRN1 Missense_Mutation p.S692R 0.38 tolerated(0.43) benign(0.003) TCGA-FU-A3HZ-01 3 38888327 38888327 C T SCN11A Missense_Mutation p.R1745Q 0.44 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 3 38936403 38936403 C A SCN11A Missense_Mutation p.R819I 0.67 deleterious(0.02) possibly_damaging(0.55) TCGA-FU-A3HZ-01 3 39159650 39159650 T C TTC21A Silent p.S269S 0.25 TCGA-FU-A3HZ-01 3 39159652 39159652 C A TTC21A Missense_Mutation p.S270Y 0.25 tolerated(0.97) benign(0) TCGA-FU-A3HZ-01 3 39161495 39161495 T G TTC21A Missense_Mutation p.I303S 0.32 tolerated(0.08) benign(0.024) TCGA-FU-A3HZ-01 3 39323113 39323113 C A CX3CR1 Missense_Mutation p.R25I 0.47 deleterious_low_confidence(0) benign(0) TCGA-FU-A3HZ-01 3 40299697 40299697 C T MYRIP 3'UTR 0.28 TCGA-FU-A3HZ-01 3 40456324 40456324 T G ENTPD3 Missense_Mutation p.F197C 0.27 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.26 deleterious(0.01) possibly_damaging(0.452) TCGA-FU-A3HZ-01 3 43607193 43607193 T G ANO10 Silent p.S415S 0.33 TCGA-FU-A3HZ-01 3 43760169 43760169 C A ABHD5 3'UTR 0.38 TCGA-FU-A3HZ-01 3 44285783 44285783 G T TOPAZ1 Missense_Mutation p.K595N 0.45 tolerated(0.46) possibly_damaging(0.527) TCGA-FU-A3HZ-01 3 44441979 44441979 G A TCAIM Missense_Mutation p.E340K 0.25 deleterious(0.02) benign(0.158) TCGA-FU-A3HZ-01 3 44762970 44762970 C T ZNF502 Nonsense_Mutation p.R221* 0.20 TCGA-FU-A3HZ-01 3 44763337 44763337 G T ZNF502 Missense_Mutation p.R343I 0.33 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 3 44763338 44763338 A C ZNF502 Missense_Mutation p.R343S 0.33 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 3 44952543 44952543 C T TGM4 Missense_Mutation p.A567V 0.31 deleterious(0.03) benign(0.223) TCGA-FU-A3HZ-01 3 45134979 45134979 C T CDCP1 Missense_Mutation p.E473K 0.28 tolerated(0.06) possibly_damaging(0.837) TCGA-FU-A3HZ-01 3 46658764 46658764 A C TDGF1 RNA 0.59 TCGA-FU-A3HZ-01 3 46716116 46716116 C A ALS2CL Missense_Mutation p.G790V 0.36 tolerated(0.06) probably_damaging(1) TCGA-FU-A3HZ-01 3 47047475 47047475 G A NBEAL2 Missense_Mutation p.D2281N 0.43 deleterious(0) possibly_damaging(0.554) TCGA-FU-A3HZ-01 3 49694005 49694005 A G BSN Missense_Mutation p.D2339G 0.31 unknown(0) TCGA-FU-A3HZ-01 3 49842782 49842782 C T UBA7 Missense_Mutation p.D1000N 0.52 tolerated(0.08) benign(0.084) TCGA-FU-A3HZ-01 3 50226106 50226106 T G SEMA3F 3'UTR 0.09 TCGA-FU-A3HZ-01 3 50232331 50232331 C T GNAT1 Silent p.F332F 0.62 TCGA-FU-A3HZ-01 3 5026541 5026541 T G BHLHE40 3'UTR 0.34 TCGA-FU-A3HZ-01 3 51251661 51251661 C A DOCK3 Missense_Mutation p.P412H 0.60 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 3 51661692 51661692 A G RAD54L2 Missense_Mutation p.H88R 0.12 tolerated_low_confidence(0.67) benign(0.023) TCGA-FU-A3HZ-01 3 51696461 51696461 C T RAD54L2 Silent p.C1143C 0.17 TCGA-FU-A3HZ-01 3 52475372 52475372 C A SEMA3G Missense_Mutation p.D241Y 0.13 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 3 52860028 52860028 A C ITIH4 Silent p.A211A 0.43 TCGA-FU-A3HZ-01 3 53213604 53213604 A C PRKCD Missense_Mutation p.T43P 0.13 deleterious(0.01) probably_damaging(0.939) TCGA-FU-A3HZ-01 3 53835295 53835295 C T CACNA1D Missense_Mutation p.P1771S 0.29 tolerated_low_confidence(0.22) benign(0.002) TCGA-FU-A3HZ-01 3 55503864 55503864 G T WNT5A 3'UTR 0.33 TCGA-FU-A3HZ-01 3 57394156 57394156 G A DNAH12 Nonsense_Mutation p.R2024* 0.60 TCGA-FU-A3HZ-01 3 57611887 57611887 C A DENND6A 3'UTR 0.27 TCGA-FU-A3HZ-01 3 62153697 62153697 C T PTPRG Missense_Mutation p.S298L 0.50 tolerated(1) probably_damaging(0.999) TCGA-FU-A3HZ-01 3 62306187 62306187 G T C3orf14 Missense_Mutation p.R14I 0.27 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 3 62384777 62384777 G A CADPS 3'UTR 0.32 TCGA-FU-A3HZ-01 3 62467447 62467447 T G CADPS Missense_Mutation p.M1042L 0.14 tolerated(0.47) benign(0.008) TCGA-FU-A3HZ-01 3 64644459 64644459 T G ADAMTS9 Missense_Mutation p.N230H 0.43 tolerated(0.66) benign(0.001) TCGA-FU-A3HZ-01 3 67059826 67059826 T C KBTBD8 3'UTR 0.35 TCGA-FU-A3HZ-01 3 67579602 67579602 C A SUCLG2 Nonsense_Mutation p.E79* 0.47 TCGA-FU-A3HZ-01 3 68466528 68466528 A G FAM19A1 Missense_Mutation p.K73E 0.33 deleterious(0) probably_damaging(0.992) TCGA-FU-A3HZ-01 3 69093647 69093647 T G TMF1 Missense_Mutation p.K483Q 0.12 tolerated(0.1) benign(0.285) TCGA-FU-A3HZ-01 3 71006501 71006501 A C FOXP1 3'Flank 0.50 TCGA-FU-A3HZ-01 3 7782895 7782895 C A GRM7 3'UTR 0.30 TCGA-FU-A3HZ-01 3 78647750 78647750 G T ROBO1 3'UTR 0.40 TCGA-FU-A3HZ-01 3 8794887 8794887 G A OXTR Missense_Mutation p.L316F 0.38 deleterious(0) probably_damaging(0.995) TCGA-FU-A3HZ-01 3 88103179 88103179 A T CGGBP1 3'UTR 0.36 TCGA-FU-A3HZ-01 3 88103311 88103311 G T CGGBP1 3'UTR 0.30 TCGA-FU-A3HZ-01 3 88191476 88191476 C T ZNF654 3'UTR 0.33 TCGA-FU-A3HZ-01 3 9069806 9069806 C A SRGAP3 Intron 0.42 TCGA-FU-A3HZ-01 3 97202827 97202827 C T EPHA6 Silent p.D708D 0.43 TCGA-FU-A3HZ-01 3 99515149 99515149 T G COL8A1 3'UTR 0.33 TCGA-FU-A3HZ-01 3 99567248 99567248 C T FILIP1L Missense_Mutation p.R1091Q 0.30 tolerated(0.09) probably_damaging(0.941) TCGA-FU-A3HZ-01 4 100125951 100125951 T C ADH6 Intron 0.15 TCGA-FU-A3HZ-01 4 101944855 101944855 T G PPP3CA 3'UTR 0.24 TCGA-FU-A3HZ-01 4 101946295 101946295 A C PPP3CA 3'UTR 0.25 TCGA-FU-A3HZ-01 4 102004359 102004359 C T PPP3CA Missense_Mutation p.E282K 0.33 deleterious(0.02) probably_damaging(0.98) TCGA-FU-A3HZ-01 4 102839164 102839164 G T BANK1 Nonsense_Mutation p.E342* 0.31 TCGA-FU-A3HZ-01 4 103718054 103718054 A C UBE2D3 3'Flank 0.20 TCGA-FU-A3HZ-01 4 103747939 103747939 G A UBE2D3 Intron 0.31 TCGA-FU-A3HZ-01 4 107844825 107844825 T G DKK2 3'UTR 0.44 TCGA-FU-A3HZ-01 4 107845110 107845110 A C DKK2 3'UTR 0.22 TCGA-FU-A3HZ-01 4 108615047 108615047 T G PAPSS1 Missense_Mutation p.K97N 0.44 deleterious(0.01) probably_damaging(0.987) TCGA-FU-A3HZ-01 4 109667588 109667588 A G ETNPPL Missense_Mutation p.F424L 0.32 tolerated(0.77) benign(0.001) TCGA-FU-A3HZ-01 4 109767295 109767295 C T COL25A1 Silent p.P505P 0.53 TCGA-FU-A3HZ-01 4 110415812 110415812 G A SEC24B Missense_Mutation p.A430T 0.35 tolerated_low_confidence(0.2) benign(0.004) TCGA-FU-A3HZ-01 4 110617577 110617577 T G CASP6 Missense_Mutation p.K99T 0.35 tolerated(0.41) benign(0.06) TCGA-FU-A3HZ-01 4 113352584 113352584 G T ALPK1 Missense_Mutation p.E627D 0.43 tolerated(0.16) benign(0.017) TCGA-FU-A3HZ-01 4 113462071 113462071 G A C4orf21 Missense_Mutation p.T1939M 0.44 tolerated(0.11) benign(0.333) TCGA-FU-A3HZ-01 4 113510989 113510989 A C C4orf21 Silent p.V1006V 0.52 TCGA-FU-A3HZ-01 4 118005916 118005916 G T TRAM1L1 Missense_Mutation p.L212I 0.17 tolerated(0.25) benign(0.05) TCGA-FU-A3HZ-01 4 120188514 120188514 C T USP53 Nonsense_Mutation p.R338* 0.32 TCGA-FU-A3HZ-01 4 121958454 121958454 G T NDNF Silent p.L224L 0.32 TCGA-FU-A3HZ-01 4 122739207 122739207 T G CCNA2 Missense_Mutation p.K414N 0.50 deleterious(0) possibly_damaging(0.612) TCGA-FU-A3HZ-01 4 123165053 123165053 A C KIAA1109 Missense_Mutation p.D1596A 0.57 possibly_damaging(0.767) TCGA-FU-A3HZ-01 4 123267858 123267858 T C KIAA1109 Missense_Mutation p.Y4272H 0.27 probably_damaging(0.998) TCGA-FU-A3HZ-01 4 123664704 123664704 C A BBS12 Missense_Mutation p.L553I 0.44 tolerated(0.08) benign(0.195) TCGA-FU-A3HZ-01 4 124324780 124324780 T G SPRY1 3'UTR 0.46 TCGA-FU-A3HZ-01 4 124324848 124324848 T G SPRY1 3'UTR 0.29 TCGA-FU-A3HZ-01 4 126373266 126373266 G A FAT4 Missense_Mutation p.V3699I 0.11 benign(0.024) TCGA-FU-A3HZ-01 4 126373322 126373322 C T FAT4 Silent p.L3717L 0.42 TCGA-FU-A3HZ-01 4 126408558 126408558 G A FAT4 Missense_Mutation p.R4292K 0.21 possibly_damaging(0.751) TCGA-FU-A3HZ-01 4 128694731 128694731 C T SLC25A31 3'UTR 0.23 TCGA-FU-A3HZ-01 4 128813661 128813661 T G PLK4 Missense_Mutation p.F727C 0.29 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 4 128949726 128949726 T G C4orf29 Missense_Mutation p.L266V 0.33 tolerated(0.51) benign(0.213) TCGA-FU-A3HZ-01 4 134071547 134071547 C A PCDH10 Silent p.I84I 0.32 TCGA-FU-A3HZ-01 4 140427195 140427195 T G SETD7 3'UTR 0.12 TCGA-FU-A3HZ-01 4 141542172 141542172 A C TBC1D9 3'UTR 0.25 TCGA-FU-A3HZ-01 4 142145644 142145644 T G ZNF330 Missense_Mutation p.C42G 0.19 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 4 143129638 143129638 C A INPP4B Nonsense_Mutation p.E338* 0.37 TCGA-FU-A3HZ-01 4 146560411 146560411 T C MMAA Silent p.C40C 0.36 TCGA-FU-A3HZ-01 4 146617722 146617722 C A C4orf51 Missense_Mutation p.T82K 0.35 tolerated(0.15) benign(0.01) TCGA-FU-A3HZ-01 4 147563051 147563051 G T POU4F2 3'UTR 0.51 TCGA-FU-A3HZ-01 4 148554065 148554065 T G TMEM184C Missense_Mutation p.V264G 0.28 deleterious(0.02) benign(0.01) TCGA-FU-A3HZ-01 4 148563981 148563981 C T PRMT10 Missense_Mutation p.R719H 0.25 tolerated(0.16) benign(0.002) TCGA-FU-A3HZ-01 4 154259031 154259031 G A TRIM2 3'UTR 0.42 TCGA-FU-A3HZ-01 4 154259628 154259628 A C TRIM2 3'UTR 0.25 TCGA-FU-A3HZ-01 4 154523328 154523328 T G KIAA0922 Nonsense_Mutation p.L764* 0.57 TCGA-FU-A3HZ-01 4 154625158 154625158 C A TLR2 Missense_Mutation p.L367I 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-FU-A3HZ-01 4 155461841 155461841 G A PLRG1 Missense_Mutation p.R282W 0.32 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 4 156296145 156296145 C T MAP9 Missense_Mutation p.R35H 0.42 tolerated(0.06) probably_damaging(1) TCGA-FU-A3HZ-01 4 156727564 156727564 C A GUCY1B3 3'UTR 0.43 TCGA-FU-A3HZ-01 4 156849542 156849542 T G CTSO Missense_Mutation p.S293R 0.09 tolerated(0.49) benign(0.008) TCGA-FU-A3HZ-01 4 158284783 158284783 T C GRIA2 3'UTR 0.40 TCGA-FU-A3HZ-01 4 159589495 159589495 C A C4orf46 3'UTR 0.35 TCGA-FU-A3HZ-01 4 164246443 164246443 C A NPY1R 3'UTR 0.33 TCGA-FU-A3HZ-01 4 165962760 165962760 T G TRIM60 3'UTR 0.43 TCGA-FU-A3HZ-01 4 167021905 167021905 G T TLL1 Missense_Mutation p.E973D 0.57 tolerated(0.37) benign(0.05) TCGA-FU-A3HZ-01 4 167022839 167022839 G T TLL1 3'UTR 0.30 TCGA-FU-A3HZ-01 4 169013774 169013774 C A ANXA10 5'UTR 0.61 TCGA-FU-A3HZ-01 4 169158512 169158512 C A DDX60 Nonsense_Mutation p.E1446* 0.43 TCGA-FU-A3HZ-01 4 170016647 170016647 A C SH3RF1 3'UTR 0.33 TCGA-FU-A3HZ-01 4 173150836 173150836 A G GALNTL6 Silent p.Q56Q 0.43 TCGA-FU-A3HZ-01 4 175412719 175412719 T C HPGD 3'UTR 0.12 TCGA-FU-A3HZ-01 4 175439155 175439155 C A HPGD Missense_Mutation p.E97D 0.58 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 4 175636664 175636664 T G GLRA3 Missense_Mutation p.Q183H 0.14 deleterious(0) probably_damaging(0.977) TCGA-FU-A3HZ-01 4 17583415 17583415 G A LAP3 Missense_Mutation p.R84Q 0.34 deleterious(0.02) probably_damaging(0.973) TCGA-FU-A3HZ-01 4 17635244 17635244 G T MED28 3'UTR 0.41 TCGA-FU-A3HZ-01 4 178352750 178352750 T A AGA 3'UTR 0.47 TCGA-FU-A3HZ-01 4 183676343 183676343 T G TENM3 Missense_Mutation p.F1608C 0.36 deleterious(0.01) benign(0.068) TCGA-FU-A3HZ-01 4 183720913 183720913 C T TENM3 Silent p.A2503A 0.40 TCGA-FU-A3HZ-01 4 185549263 185549263 G T CASP3 3'UTR 0.12 TCGA-FU-A3HZ-01 4 185550407 185550407 C A CASP3 3'UTR 0.42 TCGA-FU-A3HZ-01 4 185622015 185622015 C A CENPU Missense_Mutation p.K315N 0.17 deleterious(0) probably_damaging(0.979) TCGA-FU-A3HZ-01 4 186112193 186112193 G A KIAA1430 Missense_Mutation p.S53L 0.34 tolerated(0.61) benign(0) TCGA-FU-A3HZ-01 4 186168499 186168499 A C SNX25 5'UTR 0.39 TCGA-FU-A3HZ-01 4 186339923 186339923 T G UFSP2 Missense_Mutation p.E28D 0.45 tolerated(0.39) benign(0.001) TCGA-FU-A3HZ-01 4 188925994 188925994 G T ZFP42 3'UTR 0.39 TCGA-FU-A3HZ-01 4 20730338 20730338 T C KCNIP4 3'Flank 0.29 TCGA-FU-A3HZ-01 4 2176478 2176478 C A POLN Missense_Mutation p.D417Y 0.33 deleterious(0.04) benign(0.065) TCGA-FU-A3HZ-01 4 2240337 2240337 G T HAUS3 Missense_Mutation p.T448N 0.47 tolerated(0.19) benign(0.361) TCGA-FU-A3HZ-01 4 2240753 2240753 A C HAUS3 Missense_Mutation p.N309K 0.23 deleterious(0.04) benign(0.015) TCGA-FU-A3HZ-01 4 25005856 25005856 G A LGI2 Silent p.I285I 0.40 TCGA-FU-A3HZ-01 4 2517535 2517535 C T RNF4 3'UTR 0.24 TCGA-FU-A3HZ-01 4 264829 264829 T A ZNF732 3'UTR 0.39 TCGA-FU-A3HZ-01 4 265510 265510 T G ZNF732 Missense_Mutation p.K379T 0.50 tolerated(0.72) benign(0.399) TCGA-FU-A3HZ-01 4 27009185 27009185 G T STIM2 Nonsense_Mutation p.E338* 0.24 TCGA-FU-A3HZ-01 4 3430419 3430419 T G RGS12 Missense_Mutation p.I1182M 0.41 deleterious(0) probably_damaging(0.995) TCGA-FU-A3HZ-01 4 3516584 3516584 G A LRPAP1 Silent p.H302H 0.46 TCGA-FU-A3HZ-01 4 36212106 36212106 C T ARAP2 Missense_Mutation p.V465I 0.41 tolerated(1) benign(0) TCGA-FU-A3HZ-01 4 36230270 36230270 C T ARAP2 Missense_Mutation p.R280Q 0.32 deleterious(0.03) benign(0.048) TCGA-FU-A3HZ-01 4 37446088 37446088 C A KIAA1239 Silent p.I826I 0.43 TCGA-FU-A3HZ-01 4 37447402 37447402 A G KIAA1239 Silent p.G1264G 0.35 TCGA-FU-A3HZ-01 4 38698705 38698705 G T KLF3 Nonsense_Mutation p.E287* 0.50 TCGA-FU-A3HZ-01 4 38775990 38775990 G T TLR10 Missense_Mutation p.L408I 0.27 tolerated(0.24) possibly_damaging(0.887) TCGA-FU-A3HZ-01 4 41262670 41262670 A C UCHL1 Missense_Mutation p.N61H 0.21 tolerated(0.09) possibly_damaging(0.809) TCGA-FU-A3HZ-01 4 419621 419621 C T ABCA11P RNA 0.24 TCGA-FU-A3HZ-01 4 44176667 44176667 G T KCTD8 3'UTR 0.57 TCGA-FU-A3HZ-01 4 46973127 46973127 C A GABRA4 Nonsense_Mutation p.E283* 0.43 TCGA-FU-A3HZ-01 4 47589204 47589204 T C ATP10D Missense_Mutation p.S1308P 0.08 deleterious(0.02) benign(0.102) TCGA-FU-A3HZ-01 4 47625621 47625621 T G CORIN Missense_Mutation p.K836T 0.19 deleterious(0.03) probably_damaging(0.925) TCGA-FU-A3HZ-01 4 47667068 47667068 C T CORIN Missense_Mutation p.E524K 0.36 tolerated(0.06) benign(0.029) TCGA-FU-A3HZ-01 4 48038114 48038114 T G NIPAL1 Silent p.V386V 0.44 TCGA-FU-A3HZ-01 4 48988465 48988465 G T CWH43 Nonsense_Mutation p.E7* 0.36 TCGA-FU-A3HZ-01 4 54231279 54231279 T C SCFD2 Missense_Mutation p.D277G 0.46 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 4 55130043 55130043 G A PDGFRA Missense_Mutation p.V193I 0.64 tolerated(0.99) benign(0.007) TCGA-FU-A3HZ-01 4 55605454 55605454 G A KIT 3'UTR 0.36 TCGA-FU-A3HZ-01 4 55606134 55606134 A C KIT 3'UTR 0.40 TCGA-FU-A3HZ-01 4 56233805 56233805 C A SRD5A3 Missense_Mutation p.L205I 0.35 tolerated(0.22) possibly_damaging(0.449) TCGA-FU-A3HZ-01 4 5633691 5633691 A C EVC2 Silent p.S513S 0.24 TCGA-FU-A3HZ-01 4 57193851 57193851 G T KIAA1211 Nonsense_Mutation p.E1195* 0.38 TCGA-FU-A3HZ-01 4 57898509 57898509 T C IGFBP7 Intron 0.35 TCGA-FU-A3HZ-01 4 68384053 68384053 T G CENPC Missense_Mutation p.K217N 0.14 tolerated(0.19) benign(0.001) TCGA-FU-A3HZ-01 4 68456646 68456646 A C STAP1 Missense_Mutation p.N235T 0.32 tolerated(0.06) benign(0.345) TCGA-FU-A3HZ-01 4 6862712 6862712 T C KIAA0232 Silent p.C201C 0.38 TCGA-FU-A3HZ-01 4 68777060 68777060 T G TMPRSS11A Nonstop_Mutation p.*422Yext*30 0.44 TCGA-FU-A3HZ-01 4 69203597 69203597 C T YTHDC1 Missense_Mutation p.R51Q 0.47 tolerated_low_confidence(0.13) unknown(0) TCGA-FU-A3HZ-01 4 69696681 69696681 T G UGT2B10 3'UTR 0.57 TCGA-FU-A3HZ-01 4 70361486 70361486 C A UGT2B4 Nonsense_Mutation p.E32* 0.26 TCGA-FU-A3HZ-01 4 71347578 71347578 G A MUC7 Missense_Mutation p.D373N 0.32 tolerated_low_confidence(0.86) unknown(0) TCGA-FU-A3HZ-01 4 71394916 71394916 T C AMTN Missense_Mutation p.S116P 0.27 deleterious(0) probably_damaging(0.948) TCGA-FU-A3HZ-01 4 71588225 71588225 T G RUFY3 5'UTR 0.26 TCGA-FU-A3HZ-01 4 71656969 71656969 G T RUFY3 Intron 0.31 TCGA-FU-A3HZ-01 4 72102354 72102354 G T SLC4A4 Nonsense_Mutation p.E21* 0.29 TCGA-FU-A3HZ-01 4 72669722 72669722 C A GC 5'UTR 0.28 TCGA-FU-A3HZ-01 4 73148668 73148668 T G ADAMTS3 3'UTR 0.29 TCGA-FU-A3HZ-01 4 73148890 73148890 T C ADAMTS3 Missense_Mutation p.N1194S 0.44 deleterious_low_confidence(0.01) benign(0.005) TCGA-FU-A3HZ-01 4 75254287 75254287 C T EREG 3'UTR 0.34 TCGA-FU-A3HZ-01 4 76523295 76523295 G A CDKL2 Missense_Mutation p.S329F 0.44 tolerated(0.07) benign(0.418) TCGA-FU-A3HZ-01 4 7668894 7668894 G A SORCS2 Missense_Mutation p.R372Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 4 76797520 76797520 C A PPEF2 Nonsense_Mutation p.E414* 0.63 TCGA-FU-A3HZ-01 4 77095431 77095431 A G SCARB2 Missense_Mutation p.V287A 0.38 deleterious(0) possibly_damaging(0.7) TCGA-FU-A3HZ-01 4 77296769 77296769 C T CCDC158 Intron 0.29 TCGA-FU-A3HZ-01 4 77660882 77660882 A C SHROOM3 Missense_Mutation p.N519T 0.32 deleterious(0) probably_damaging(0.946) TCGA-FU-A3HZ-01 4 78635379 78635379 A C CNOT6L 3'UTR 0.26 TCGA-FU-A3HZ-01 4 78639046 78639046 A C CNOT6L 3'UTR 0.09 TCGA-FU-A3HZ-01 4 78640104 78640104 C A CNOT6L 3'UTR 0.50 TCGA-FU-A3HZ-01 4 78873836 78873836 C A MRPL1 3'UTR 0.45 TCGA-FU-A3HZ-01 4 80328137 80328137 C A GK2 Missense_Mutation p.E406D 0.21 tolerated(0.67) possibly_damaging(0.597) TCGA-FU-A3HZ-01 4 81188318 81188318 G A FGF5 Missense_Mutation p.E114K 0.20 deleterious(0.03) possibly_damaging(0.488) TCGA-FU-A3HZ-01 4 82056359 82056359 C A PRKG2 Missense_Mutation p.D576Y 0.42 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 4 83787987 83787987 G A SEC31A Nonsense_Mutation p.R391* 0.50 TCGA-FU-A3HZ-01 4 83838284 83838284 C T THAP9 Missense_Mutation p.L307F 0.34 tolerated(0.15) possibly_damaging(0.905) TCGA-FU-A3HZ-01 4 85594031 85594031 C T WDFY3 Missense_Mutation p.R3524Q 0.50 tolerated_low_confidence(0.11) benign(0.023) TCGA-FU-A3HZ-01 4 85623529 85623529 A G WDFY3 Missense_Mutation p.F2858S 0.28 tolerated(0.21) benign(0) TCGA-FU-A3HZ-01 4 85696122 85696122 C A WDFY3 Missense_Mutation p.K1535N 0.29 tolerated(0.31) benign(0.014) TCGA-FU-A3HZ-01 4 8582662 8582662 G A GPR78 5'UTR 0.19 TCGA-FU-A3HZ-01 4 85884 85884 T C Z95704.2 RNA 0.45 TCGA-FU-A3HZ-01 4 86938275 86938275 C A MAPK10 3'UTR 0.26 TCGA-FU-A3HZ-01 4 87028656 87028656 G T MAPK10 Intron 0.73 TCGA-FU-A3HZ-01 4 87731118 87731118 T G PTPN13 Nonsense_Mutation p.L2432* 0.21 TCGA-FU-A3HZ-01 4 87809014 87809014 G A C4orf36 Missense_Mutation p.R85C 0.26 deleterious(0.02) probably_damaging(0.942) TCGA-FU-A3HZ-01 4 88532043 88532043 T G DSPP 5'UTR 0.09 TCGA-FU-A3HZ-01 4 89304372 89304372 G T HERC6 Splice_Site p.X67_splice 0.35 TCGA-FU-A3HZ-01 4 89415422 89415422 A C HERC5 Missense_Mutation p.K795T 0.10 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 4 90647411 90647411 A C SNCA 3'UTR 0.18 TCGA-FU-A3HZ-01 4 90857582 90857582 C A MMRN1 Missense_Mutation p.F917L 0.20 tolerated(0.36) benign(0.015) TCGA-FU-A3HZ-01 4 946159 946159 C T TMEM175 Missense_Mutation p.S128L 0.32 tolerated(0.12) benign(0.418) TCGA-FU-A3HZ-01 4 99801203 99801203 C A EIF4E 3'Flank 0.40 TCGA-FU-A3HZ-01 5 108281858 108281858 G T FER Nonsense_Mutation p.E422* 0.27 TCGA-FU-A3HZ-01 5 109110644 109110644 C A MAN2A1 Missense_Mutation p.S451Y 0.29 deleterious(0) probably_damaging(0.975) TCGA-FU-A3HZ-01 5 10972957 10972957 A C CTNND2 3'UTR 0.27 TCGA-FU-A3HZ-01 5 109760531 109760531 T G TMEM232 Missense_Mutation p.D597A 0.35 deleterious(0.01) probably_damaging(0.936) TCGA-FU-A3HZ-01 5 110466152 110466152 C A WDR36 3'UTR 0.40 TCGA-FU-A3HZ-01 5 110818492 110818492 T G CAMK4 Missense_Mutation p.L280V 0.33 deleterious(0) probably_damaging(0.987) TCGA-FU-A3HZ-01 5 112177389 112177389 A G APC Missense_Mutation p.D2033G 0.19 probably_damaging(0.999) TCGA-FU-A3HZ-01 5 112889509 112889509 A C YTHDC2 Missense_Mutation p.Q670H 0.12 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 5 112927792 112927792 G A YTHDC2 Missense_Mutation p.E1377K 0.35 tolerated(0.24) possibly_damaging(0.467) TCGA-FU-A3HZ-01 5 113740463 113740463 C A KCNN2 Missense_Mutation p.T304N 0.37 deleterious(0) probably_damaging(0.95) TCGA-FU-A3HZ-01 5 114547646 114547646 T G PGGT1B 3'UTR 0.22 TCGA-FU-A3HZ-01 5 114949529 114949529 G T TMED7 3'UTR 0.37 TCGA-FU-A3HZ-01 5 115350168 115350168 C T AQPEP Silent p.D798D 0.48 TCGA-FU-A3HZ-01 5 118433713 118433713 G A DMXL1 Missense_Mutation p.D43N 0.27 tolerated(0.31) benign(0.013) TCGA-FU-A3HZ-01 5 118814621 118814621 A C HSD17B4 Missense_Mutation p.N201T 0.35 deleterious(0) probably_damaging(0.979) TCGA-FU-A3HZ-01 5 120022419 120022419 A T PRR16 3'UTR 0.47 TCGA-FU-A3HZ-01 5 120022722 120022722 C A PRR16 3'UTR 0.40 TCGA-FU-A3HZ-01 5 121776323 121776323 G T SNCAIP Splice_Site p.X433_splice 0.37 TCGA-FU-A3HZ-01 5 123983731 123983731 A C ZNF608 Missense_Mutation p.S782R 0.10 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 5 123984032 123984032 G A ZNF608 Missense_Mutation p.A682V 0.19 tolerated(0.74) benign(0.035) TCGA-FU-A3HZ-01 5 1244730 1244730 G A SLC6A18 Missense_Mutation p.D502N 0.16 tolerated(0.19) benign(0.219) TCGA-FU-A3HZ-01 5 125829458 125829458 T G GRAMD3 3'Flank 0.60 TCGA-FU-A3HZ-01 5 132235312 132235312 T C AFF4 Silent p.K385K 0.19 TCGA-FU-A3HZ-01 5 133561483 133561483 A G PPP2CA Missense_Mutation p.S24P 0.10 tolerated(0.42) benign(0.031) TCGA-FU-A3HZ-01 5 133726845 133726845 T G UBE2B 3'UTR 0.50 TCGA-FU-A3HZ-01 5 134696332 134696332 A C H2AFY Intron 0.33 TCGA-FU-A3HZ-01 5 135515182 135515182 G T SMAD5 3'UTR 0.40 TCGA-FU-A3HZ-01 5 137451258 137451258 A C NME5 3'UTR 0.26 TCGA-FU-A3HZ-01 5 137804005 137804005 T G EGR1 3'UTR 0.53 TCGA-FU-A3HZ-01 5 139494072 139494072 C T PURA Silent p.L102L 0.27 TCGA-FU-A3HZ-01 5 139495576 139495576 T G PURA 3'UTR 0.13 TCGA-FU-A3HZ-01 5 139505747 139505747 C A IGIP 5'UTR 0.55 TCGA-FU-A3HZ-01 5 139680016 139680016 T C PFDN1 Missense_Mutation p.E62G 0.40 deleterious(0) possibly_damaging(0.9) TCGA-FU-A3HZ-01 5 139892498 139892498 T G ANKHD1 Missense_Mutation p.I1397S 0.32 benign(0.227) TCGA-FU-A3HZ-01 5 140012163 140012163 G A CD14 Missense_Mutation p.P136S 0.20 tolerated(0.5) possibly_damaging(0.719) TCGA-FU-A3HZ-01 5 140062703 140062703 T G HARS Silent p.T94T 0.19 TCGA-FU-A3HZ-01 5 140086011 140086011 T G ZMAT2 3'UTR 0.27 TCGA-FU-A3HZ-01 5 140166648 140166648 G T PCDHA1 Missense_Mutation p.G258V 0.36 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-FU-A3HZ-01 5 140231708 140231708 A C PCDHA9 Intron 0.60 TCGA-FU-A3HZ-01 5 140249718 140249718 G T PCDHA11 Missense_Mutation p.D344Y 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 5 140262328 140262328 G A PCDHA13 Missense_Mutation p.D159N 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-FU-A3HZ-01 5 140348138 140348138 G A PCDHAC2 Missense_Mutation p.R596Q 0.32 deleterious(0.02) possibly_damaging(0.832) TCGA-FU-A3HZ-01 5 140391405 140391405 A C PCDHAC1 3'UTR 0.11 TCGA-FU-A3HZ-01 5 140530913 140530913 C G PCDHB6 Missense_Mutation p.P359A 0.24 deleterious(0.05) benign(0.062) TCGA-FU-A3HZ-01 5 140531150 140531150 C T PCDHB6 Nonsense_Mutation p.Q438* 0.09 TCGA-FU-A3HZ-01 5 140554024 140554024 C T PCDHB7 Silent p.R536R 0.41 TCGA-FU-A3HZ-01 5 140557821 140557821 C T PCDHB8 Missense_Mutation p.S69F 0.24 tolerated_low_confidence(0.41) possibly_damaging(0.76) TCGA-FU-A3HZ-01 5 140588388 140588388 T G PCDHB12 5'UTR 0.30 TCGA-FU-A3HZ-01 5 140711803 140711803 C T PCDHGA1 Nonsense_Mutation p.R518* 0.18 TCGA-FU-A3HZ-01 5 140756057 140756057 G T PCDHGA6 Nonsense_Mutation p.E803* 0.36 TCGA-FU-A3HZ-01 5 140810713 140810713 T C PCDHGA12 Silent p.N129N 0.39 TCGA-FU-A3HZ-01 5 140866758 140866758 T C PCDHGC4 Missense_Mutation p.V673A 0.48 tolerated(0.18) benign(0) TCGA-FU-A3HZ-01 5 141007487 141007487 C T HDAC3 Missense_Mutation p.C268Y 0.43 deleterious(0) probably_damaging(0.98) TCGA-FU-A3HZ-01 5 141021033 141021033 A C FCHSD1 3'UTR 0.12 TCGA-FU-A3HZ-01 5 141024239 141024239 C T FCHSD1 Missense_Mutation p.E515K 0.48 deleterious(0.01) benign(0.228) TCGA-FU-A3HZ-01 5 141533080 141533080 T G NDFIP1 3'UTR 0.44 TCGA-FU-A3HZ-01 5 143586723 143586723 G T KCTD16 Missense_Mutation p.R149I 0.42 tolerated(0.14) probably_damaging(0.996) TCGA-FU-A3HZ-01 5 145509673 145509673 C A LARS Nonsense_Mutation p.E846* 0.18 TCGA-FU-A3HZ-01 5 145537109 145537109 G A LARS Missense_Mutation p.R308C 0.54 tolerated(0.08) benign(0.033) TCGA-FU-A3HZ-01 5 145648833 145648833 G T RBM27 Nonsense_Mutation p.E839* 0.54 TCGA-FU-A3HZ-01 5 145878161 145878161 A C TCERG1 Missense_Mutation p.K765T 0.12 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 5 145969747 145969747 G A PPP2R2B Silent p.F368F 0.47 TCGA-FU-A3HZ-01 5 14602325 14602325 A G FAM105A Missense_Mutation p.K128E 0.50 tolerated(0.17) benign(0.05) TCGA-FU-A3HZ-01 5 14709981 14709981 A C ANKH 3'UTR 0.38 TCGA-FU-A3HZ-01 5 147211162 147211162 G T SPINK1 5'UTR 0.29 TCGA-FU-A3HZ-01 5 148732527 148732527 T G GRPEL2 3'UTR 0.46 TCGA-FU-A3HZ-01 5 149215909 149215909 G T PPARGC1B Nonsense_Mutation p.E631* 0.40 TCGA-FU-A3HZ-01 5 149360293 149360293 T C SLC26A2 Silent p.I379I 0.54 TCGA-FU-A3HZ-01 5 149412102 149412102 G A HMGXB3 Missense_Mutation p.R640Q 0.40 tolerated(0.28) possibly_damaging(0.638) TCGA-FU-A3HZ-01 5 149501549 149501549 G A PDGFRB Silent p.D746D 0.32 TCGA-FU-A3HZ-01 5 149934622 149934622 G A NDST1 3'UTR 0.40 TCGA-FU-A3HZ-01 5 149997971 149997971 C A SYNPO Missense_Mutation p.S14R 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.695) TCGA-FU-A3HZ-01 5 150275824 150275824 T G ZNF300 Missense_Mutation p.D342A 0.24 tolerated(0.15) benign(0.108) TCGA-FU-A3HZ-01 5 150310854 150310854 C A ZNF300P1 RNA 0.39 TCGA-FU-A3HZ-01 5 150663650 150663650 C A SLC36A3 Missense_Mutation p.G351V 0.16 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 5 150856276 150856276 T G SLC36A1 Silent p.A316A 0.37 TCGA-FU-A3HZ-01 5 150923212 150923212 C T FAT2 Silent p.E2492E 0.47 TCGA-FU-A3HZ-01 5 151208606 151208606 T C GLRA1 Missense_Mutation p.D312G 0.50 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 5 154173553 154173553 C T LARP1 Silent p.G277G 0.40 TCGA-FU-A3HZ-01 5 154330435 154330435 A C MRPL22 Missense_Mutation p.K44N 0.27 tolerated(0.17) benign(0.002) TCGA-FU-A3HZ-01 5 154395747 154395747 G T KIF4B Missense_Mutation p.Q776H 0.46 tolerated(0.14) possibly_damaging(0.77) TCGA-FU-A3HZ-01 5 156191200 156191200 A C SGCD 3'Flank 0.36 TCGA-FU-A3HZ-01 5 157162884 157162884 T C THG1L Missense_Mutation p.F190S 0.31 deleterious(0) probably_damaging(0.986) TCGA-FU-A3HZ-01 5 157213496 157213496 C T CLINT1 3'Flank 0.23 TCGA-FU-A3HZ-01 5 158742842 158742842 A C IL12B 3'UTR 0.29 TCGA-FU-A3HZ-01 5 158745853 158745853 G T IL12B Missense_Mutation p.S249Y 0.47 deleterious(0.04) possibly_damaging(0.861) TCGA-FU-A3HZ-01 5 161326355 161326355 C A GABRA1 3'UTR 0.56 TCGA-FU-A3HZ-01 5 161582525 161582525 C A GABRG2 3'UTR 0.29 TCGA-FU-A3HZ-01 5 162900249 162900249 G A HMMR Missense_Mutation p.E239K 0.38 tolerated(0.09) benign(0.316) TCGA-FU-A3HZ-01 5 167887710 167887710 G A WWC1 Missense_Mutation p.R960Q 0.35 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 5 168114012 168114012 A C SLIT3 Missense_Mutation p.Y1096D 0.28 deleterious(0) probably_damaging(0.984) TCGA-FU-A3HZ-01 5 168180967 168180967 G A SLIT3 Silent p.F577F 0.55 TCGA-FU-A3HZ-01 5 169461438 169461438 C T DOCK2 Missense_Mutation p.A1168V 0.40 tolerated(0.49) benign(0.06) TCGA-FU-A3HZ-01 5 169472857 169472857 C T DOCK2 Missense_Mutation p.A1305V 0.33 tolerated(0.2) benign(0.104) TCGA-FU-A3HZ-01 5 171305107 171305107 A C FBXW11 Missense_Mutation p.C272W 0.38 deleterious(0) probably_damaging(0.991) TCGA-FU-A3HZ-01 5 171780984 171780984 C T SH3PXD2B Silent p.P231P 0.38 TCGA-FU-A3HZ-01 5 172359474 172359474 C T ERGIC1 Missense_Mutation p.P193S 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-FU-A3HZ-01 5 172560910 172560910 T C CREBRF 3'UTR 0.34 TCGA-FU-A3HZ-01 5 172563408 172563408 A - CREBRF 3'UTR 0.32 TCGA-FU-A3HZ-01 5 172659413 172659413 G T NKX2-5 3'UTR 0.35 TCGA-FU-A3HZ-01 5 173315742 173315742 A G CPEB4 5'UTR 0.37 TCGA-FU-A3HZ-01 5 175392151 175392151 G A THOC3 Silent p.N144N 0.37 TCGA-FU-A3HZ-01 5 176825089 176825089 G T SLC34A1 Missense_Mutation p.Q574H 0.14 deleterious(0.03) benign(0.033) TCGA-FU-A3HZ-01 5 176959530 176959530 G A FAM193B Nonsense_Mutation p.R397* 0.31 TCGA-FU-A3HZ-01 5 178043942 178043942 G A CLK4 Silent p.I161I 0.33 TCGA-FU-A3HZ-01 5 178358445 178358445 G A ZFP2 Missense_Mutation p.R44K 0.52 tolerated(1) benign(0) TCGA-FU-A3HZ-01 5 178416330 178416330 C A GRM6 Missense_Mutation p.E363D 0.39 tolerated(0.7) benign(0.006) TCGA-FU-A3HZ-01 5 178506476 178506476 G T ZNF354C Missense_Mutation p.R348I 0.29 deleterious(0.02) probably_damaging(0.923) TCGA-FU-A3HZ-01 5 178540923 178540923 C A ADAMTS2 Missense_Mutation p.R1194I 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 5 179134136 179134136 G A CANX Nonsense_Mutation p.W83* 0.19 TCGA-FU-A3HZ-01 5 179315238 179315238 C A TBC1D9B Missense_Mutation p.M373I 0.47 tolerated(0.05) benign(0.088) TCGA-FU-A3HZ-01 5 179758550 179758550 A C GFPT2 Missense_Mutation p.F115C 0.44 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 5 179996326 179996326 C A CNOT6 Missense_Mutation p.S415Y 0.42 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 5 180004261 180004261 A G CNOT6 3'UTR 0.11 TCGA-FU-A3HZ-01 5 180029386 180029386 C A FLT4 3'UTR 0.50 TCGA-FU-A3HZ-01 5 180056320 180056320 A C FLT4 Nonsense_Mutation p.Y308* 0.30 TCGA-FU-A3HZ-01 5 1802490 1802490 T C NDUFS6 Splice_Site p.X62_splice 0.44 TCGA-FU-A3HZ-01 5 180277034 180277034 G A ZFP62 Silent p.I487I 0.33 TCGA-FU-A3HZ-01 5 180622600 180622600 C T TRIM7 Missense_Mutation p.E368K 0.41 tolerated(0.88) benign(0.052) TCGA-FU-A3HZ-01 5 180660643 180660643 G A TRIM41 Missense_Mutation p.E391K 0.28 tolerated(0.62) benign(0.002) TCGA-FU-A3HZ-01 5 180662431 180662431 A G TRIM41 3'UTR 0.36 TCGA-FU-A3HZ-01 5 1879762 1879762 G A IRX4 Missense_Mutation p.R198W 0.37 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 5 21975495 21975495 C T CDH12 Splice_Site p.X78_splice 0.29 TCGA-FU-A3HZ-01 5 23524514 23524514 A T PRDM9 Missense_Mutation p.Y341F 0.40 deleterious(0) benign(0.134) TCGA-FU-A3HZ-01 5 23526462 23526462 G T PRDM9 Missense_Mutation p.R422I 0.34 tolerated(0.06) benign(0.296) TCGA-FU-A3HZ-01 5 24487975 24487975 C A CDH10 Missense_Mutation p.D722Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 5 24491741 24491741 G A CDH10 Missense_Mutation p.A607V 0.25 tolerated(0.29) probably_damaging(0.935) TCGA-FU-A3HZ-01 5 2746843 2746843 G T IRX2 3'UTR 0.48 TCGA-FU-A3HZ-01 5 2755148 2755148 G T C5orf38 Missense_Mutation p.R137I 0.50 deleterious_low_confidence(0) unknown(0) TCGA-FU-A3HZ-01 5 32053919 32053919 A G PDZD2 Silent p.G610G 0.44 TCGA-FU-A3HZ-01 5 34945078 34945078 A C DNAJC21 Missense_Mutation p.N364H 0.31 deleterious(0.02) benign(0.029) TCGA-FU-A3HZ-01 5 36183987 36183987 C T SKP2 3'UTR 0.30 TCGA-FU-A3HZ-01 5 36271364 36271364 T G RANBP3L Missense_Mutation p.Q47H 0.35 tolerated(0.27) benign(0.002) TCGA-FU-A3HZ-01 5 37044825 37044825 T G NIPBL Missense_Mutation p.Y2113D 0.34 deleterious(0) probably_damaging(0.949) TCGA-FU-A3HZ-01 5 38506637 38506637 G A LIFR Silent p.G363G 0.11 TCGA-FU-A3HZ-01 5 38941514 38941514 A C RICTOR 3'UTR 0.12 TCGA-FU-A3HZ-01 5 38963010 38963010 G T RICTOR Missense_Mutation p.L512I 0.36 tolerated(0.35) benign(0.275) TCGA-FU-A3HZ-01 5 39127907 39127907 T C FYB Missense_Mutation p.I625V 0.09 tolerated(0.29) benign(0.001) TCGA-FU-A3HZ-01 5 40681118 40681118 C T PTGER4 Missense_Mutation p.S8L 0.29 tolerated(0.14) benign(0.002) TCGA-FU-A3HZ-01 5 41048537 41048537 A C MROH2B Missense_Mutation p.L525V 0.24 tolerated(0.47) benign(0.098) TCGA-FU-A3HZ-01 5 41159289 41159289 G A C6 Missense_Mutation p.S584L 0.36 tolerated(0.22) benign(0.36) TCGA-FU-A3HZ-01 5 42719201 42719201 A G GHR Missense_Mutation p.D531G 0.38 tolerated(0.08) possibly_damaging(0.649) TCGA-FU-A3HZ-01 5 43040290 43040290 A C ANXA2R 5'UTR 0.22 TCGA-FU-A3HZ-01 5 43675755 43675755 G A NNT Missense_Mutation p.S926N 0.14 tolerated(0.83) benign(0.001) TCGA-FU-A3HZ-01 5 45262042 45262042 C T HCN1 Missense_Mutation p.R885Q 0.61 deleterious_low_confidence(0) benign(0.062) TCGA-FU-A3HZ-01 5 45303915 45303915 T G HCN1 Missense_Mutation p.K468N 0.46 tolerated(0.13) probably_damaging(0.992) TCGA-FU-A3HZ-01 5 45645494 45645494 C A HCN1 Missense_Mutation p.K214N 0.33 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 5 50683411 50683411 C T ISL1 Silent p.I102I 0.53 TCGA-FU-A3HZ-01 5 52206101 52206101 G A ITGA1 Missense_Mutation p.R570H 0.56 deleterious(0) probably_damaging(0.957) TCGA-FU-A3HZ-01 5 52248394 52248394 C T ITGA1 3'UTR 0.45 TCGA-FU-A3HZ-01 5 53181515 53181515 A C ARL15 3'UTR 0.44 TCGA-FU-A3HZ-01 5 54527209 54527209 C T CCNO Silent p.S349S 0.27 TCGA-FU-A3HZ-01 5 5466580 5466580 G T KIAA0947 Missense_Mutation p.R2009I 0.44 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 5 55237196 55237196 G A IL6ST Missense_Mutation p.S824F 0.30 tolerated(0.4) benign(0.066) TCGA-FU-A3HZ-01 5 56542249 56542249 A C GPBP1 Missense_Mutation p.N208H 0.26 deleterious(0.01) benign(0.068) TCGA-FU-A3HZ-01 5 58268067 58268067 A C PDE4D 3'UTR 0.37 TCGA-FU-A3HZ-01 5 63257163 63257163 G A HTR1A Silent p.C128C 0.30 TCGA-FU-A3HZ-01 5 6599610 6599610 A C NSUN2 3'UTR 0.36 TCGA-FU-A3HZ-01 5 66478749 66478749 A G CD180 Missense_Mutation p.L641S 0.43 tolerated(0.35) benign(0.035) TCGA-FU-A3HZ-01 5 6756777 6756777 A C PAPD7 3'UTR 0.39 TCGA-FU-A3HZ-01 5 68840932 68840932 G T OCLN Missense_Mutation p.E413D 0.26 tolerated(0.96) benign(0.032) TCGA-FU-A3HZ-01 5 71495218 71495218 G T MAP1B Missense_Mutation p.E2012D 0.43 probably_damaging(0.91) TCGA-FU-A3HZ-01 5 72385541 72385541 G A FCHO2 3'UTR 0.35 TCGA-FU-A3HZ-01 5 72848421 72848421 T G ANKRA2 3'UTR 0.13 TCGA-FU-A3HZ-01 5 73183492 73183492 C A ARHGEF28 Silent p.I1125I 0.37 TCGA-FU-A3HZ-01 5 74055228 74055228 A G GFM2 Missense_Mutation p.S58P 0.08 deleterious_low_confidence(0.03) benign(0.076) TCGA-FU-A3HZ-01 5 74532532 74532532 C A ANKRD31 5'UTR 0.37 TCGA-FU-A3HZ-01 5 75967719 75967719 C T IQGAP2 Silent p.I993I 0.19 TCGA-FU-A3HZ-01 5 76265154 76265154 T G CRHBP 3'UTR 0.36 TCGA-FU-A3HZ-01 5 76734176 76734176 G T WDR41 Missense_Mutation p.A298D 0.35 deleterious(0) possibly_damaging(0.701) TCGA-FU-A3HZ-01 5 76932717 76932717 T C OTP Missense_Mutation p.T126A 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A3HZ-01 5 78073370 78073370 A C ARSB 3'UTR 0.56 TCGA-FU-A3HZ-01 5 7867647 7867647 C T FASTKD3 Missense_Mutation p.A184T 0.20 tolerated(0.05) possibly_damaging(0.601) TCGA-FU-A3HZ-01 5 79029421 79029421 A T CMYA5 Missense_Mutation p.Q1611H 0.40 probably_damaging(0.969) TCGA-FU-A3HZ-01 5 79616659 79616659 G T SPZ1 Missense_Mutation p.D209Y 0.29 tolerated(0.05) possibly_damaging(0.839) TCGA-FU-A3HZ-01 5 79815583 79815583 T G FAM151B Missense_Mutation p.I130S 0.09 deleterious(0) possibly_damaging(0.826) TCGA-FU-A3HZ-01 5 79854475 79854475 T C ANKRD34B Missense_Mutation p.N455S 0.10 tolerated(0.16) benign(0.009) TCGA-FU-A3HZ-01 5 81047019 81047019 T G SSBP2 5'UTR 0.53 TCGA-FU-A3HZ-01 5 82815884 82815884 G T VCAN Nonsense_Mutation p.E587* 0.44 TCGA-FU-A3HZ-01 5 82834583 82834583 A C VCAN Missense_Mutation p.I1921L 0.31 tolerated(0.17) benign(0.045) TCGA-FU-A3HZ-01 5 82849188 82849188 G A VCAN Missense_Mutation p.E3167K 0.43 deleterious(0.05) possibly_damaging(0.88) TCGA-FU-A3HZ-01 5 848731 848731 G A ZDHHC11 Silent p.I89I 0.15 TCGA-FU-A3HZ-01 5 86658380 86658380 G T RASA1 Missense_Mutation p.V449L 0.24 tolerated(0.22) benign(0.011) TCGA-FU-A3HZ-01 5 87962739 87962739 A C LINC00461 RNA 0.36 TCGA-FU-A3HZ-01 5 88100485 88100485 T C MEF2C Missense_Mutation p.D63G 0.43 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 5 886717 886717 C A BRD9 Nonsense_Mutation p.E275* 0.09 TCGA-FU-A3HZ-01 5 90041539 90041539 T G GPR98 Missense_Mutation p.I3634S 0.50 benign(0.291) TCGA-FU-A3HZ-01 5 90072290 90072290 C T GPR98 Missense_Mutation p.R4142W 0.50 possibly_damaging(0.876) TCGA-FU-A3HZ-01 5 92919608 92919608 T C NR2F1 5'UTR 0.38 TCGA-FU-A3HZ-01 5 95234329 95234329 T C ELL2 Silent p.S380S 0.08 TCGA-FU-A3HZ-01 5 96271297 96271297 G A LNPEP 5'UTR 0.44 TCGA-FU-A3HZ-01 5 98106447 98106447 C A RGMB Intron 0.31 TCGA-FU-A3HZ-01 6 100837614 100837614 G A SIM1 3'UTR 0.41 TCGA-FU-A3HZ-01 6 101248365 101248365 A T ASCC3 Missense_Mutation p.I313N 0.48 tolerated(0.36) benign(0.037) TCGA-FU-A3HZ-01 6 10397019 10397019 G T TFAP2A 3'UTR 0.41 TCGA-FU-A3HZ-01 6 105736680 105736680 G T PREP Missense_Mutation p.F469L 0.12 tolerated(1) benign(0.001) TCGA-FU-A3HZ-01 6 106555465 106555465 C T PRDM1 3'UTR 0.46 TCGA-FU-A3HZ-01 6 107386468 107386468 A C BEND3 3'UTR 0.39 TCGA-FU-A3HZ-01 6 107980904 107980904 C T SOBP 3'UTR 0.22 TCGA-FU-A3HZ-01 6 108070974 108070974 G A SCML4 Missense_Mutation p.P67L 0.39 deleterious(0.01) benign(0.223) TCGA-FU-A3HZ-01 6 108202401 108202401 T G SEC63 Missense_Mutation p.E629D 0.30 deleterious(0.01) benign(0.414) TCGA-FU-A3HZ-01 6 108508606 108508606 C A NR2E1 Missense_Mutation p.T366N 0.35 deleterious(0.01) benign(0.037) TCGA-FU-A3HZ-01 6 10874955 10874955 C A GCM2 Missense_Mutation p.R265I 0.43 deleterious(0) possibly_damaging(0.907) TCGA-FU-A3HZ-01 6 109819063 109819063 G A AK9 Nonsense_Mutation p.R1718* 0.16 TCGA-FU-A3HZ-01 6 109980591 109980591 C A AK9 Missense_Mutation p.R157I 0.39 deleterious(0) probably_damaging(0.987) TCGA-FU-A3HZ-01 6 1102063 1102063 A C AL033381.1 Missense_Mutation p.E16A 0.39 benign(0) TCGA-FU-A3HZ-01 6 111283616 111283616 A C GTF3C6 Missense_Mutation p.K90T 0.45 tolerated(0.14) benign(0.125) TCGA-FU-A3HZ-01 6 116263652 116263652 C A FRK Missense_Mutation p.E481D 0.43 tolerated(0.16) possibly_damaging(0.848) TCGA-FU-A3HZ-01 6 116325055 116325055 C A FRK Nonsense_Mutation p.E151* 0.30 TCGA-FU-A3HZ-01 6 116566655 116566655 T G NT5DC1 3'UTR 0.25 TCGA-FU-A3HZ-01 6 116574447 116574447 C T TSPYL4 Missense_Mutation p.R242H 0.44 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 6 116832890 116832890 T G FAM26E Missense_Mutation p.F11V 0.50 tolerated(0.24) benign(0.012) TCGA-FU-A3HZ-01 6 116937710 116937710 G T RSPH4A 5'UTR 0.11 TCGA-FU-A3HZ-01 6 118635200 118635200 C A SLC35F1 Missense_Mutation p.L338I 0.31 deleterious(0) probably_damaging(0.973) TCGA-FU-A3HZ-01 6 119136036 119136036 T C MCM9 Missense_Mutation p.D1128G 0.32 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FU-A3HZ-01 6 12015869 12015869 G A HIVEP1 Missense_Mutation p.R3Q 0.17 deleterious(0) probably_damaging(0.988) TCGA-FU-A3HZ-01 6 12120152 12120152 T G HIVEP1 Missense_Mutation p.S42A 0.31 tolerated(0.35) benign(0.206) TCGA-FU-A3HZ-01 6 121638732 121638732 C T TBC1D32 Missense_Mutation p.R135Q 0.33 tolerated(0.13) benign(0.008) TCGA-FU-A3HZ-01 6 121769956 121769956 A C GJA1 3'UTR 0.29 TCGA-FU-A3HZ-01 6 123130386 123130386 G T SMPDL3A Missense_Mutation p.D399Y 0.30 deleterious(0) benign(0.211) TCGA-FU-A3HZ-01 6 126080948 126080948 A C HEY2 Nonstop_Mutation p.*338Yext*25 0.31 TCGA-FU-A3HZ-01 6 127767741 127767741 C T KIAA0408 Missense_Mutation p.E575K 0.47 tolerated(0.75) benign(0.05) TCGA-FU-A3HZ-01 6 127797568 127797568 C A SOGA3 Nonsense_Mutation p.E535* 0.23 TCGA-FU-A3HZ-01 6 129571353 129571353 T G LAMA2 Missense_Mutation p.L627V 0.16 deleterious(0.02) benign(0.141) TCGA-FU-A3HZ-01 6 129573365 129573365 T G LAMA2 Missense_Mutation p.F674C 0.38 deleterious(0) probably_damaging(0.969) TCGA-FU-A3HZ-01 6 129785560 129785560 C T LAMA2 Missense_Mutation p.S2373L 0.33 deleterious(0.03) benign(0.079) TCGA-FU-A3HZ-01 6 131481239 131481239 A C AKAP7 Missense_Mutation p.E64D 0.47 tolerated(0.05) benign(0.094) TCGA-FU-A3HZ-01 6 132031684 132031684 A C CTAGE9 Silent p.S158S 0.20 TCGA-FU-A3HZ-01 6 132874749 132874749 T C TAAR8 Silent p.N306N 0.23 TCGA-FU-A3HZ-01 6 132938869 132938869 A G TAAR2 Missense_Mutation p.V159A 0.50 tolerated(0.27) benign(0.009) TCGA-FU-A3HZ-01 6 132939229 132939229 G T TAAR2 Missense_Mutation p.S39Y 0.47 tolerated(0.14) benign(0.326) TCGA-FU-A3HZ-01 6 133045825 133045825 A G VNN3 3'UTR 0.35 TCGA-FU-A3HZ-01 6 133850494 133850494 T G EYA4 3'UTR 0.16 TCGA-FU-A3HZ-01 6 134350492 134350492 C A SLC2A12 Missense_Mutation p.E157D 0.43 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 6 135358048 135358048 C T HBS1L Intron 0.41 TCGA-FU-A3HZ-01 6 13601168 13601168 A G SIRT5 Missense_Mutation p.T282A 0.33 tolerated(0.05) benign(0.058) TCGA-FU-A3HZ-01 6 137041623 137041623 A C MAP3K5 Missense_Mutation p.C185G 0.36 tolerated(0.65) possibly_damaging(0.761) TCGA-FU-A3HZ-01 6 137519179 137519179 C A IFNGR1 Nonsense_Mutation p.E487* 0.41 TCGA-FU-A3HZ-01 6 138640859 138640859 T C KIAA1244 Silent p.Y1498Y 0.39 TCGA-FU-A3HZ-01 6 144269240 144269240 T C PLAGL1 Missense_Mutation p.T12A 0.33 tolerated(0.74) benign(0.022) TCGA-FU-A3HZ-01 6 144509163 144509163 A C STX11 3'UTR 0.07 TCGA-FU-A3HZ-01 6 144724303 144724303 A C UTRN Missense_Mutation p.N42H 0.31 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 6 148840845 148840845 A G SASH1 Missense_Mutation p.D342G 0.38 tolerated_low_confidence(0.1) benign(0.015) TCGA-FU-A3HZ-01 6 151055208 151055208 G T PLEKHG1 Missense_Mutation p.D131Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 6 151936779 151936779 A C CCDC170 Missense_Mutation p.K638Q 0.44 tolerated(0.15) benign(0.193) TCGA-FU-A3HZ-01 6 152424071 152424071 T G ESR1 3'UTR 0.38 TCGA-FU-A3HZ-01 6 152565761 152565761 C A SYNE1 Nonsense_Mutation p.E6535* 0.36 TCGA-FU-A3HZ-01 6 152576221 152576221 G T SYNE1 Missense_Mutation p.L6422I 0.30 probably_damaging(0.996) TCGA-FU-A3HZ-01 6 152768678 152768678 G T SYNE1 Missense_Mutation p.S1195Y 0.63 possibly_damaging(0.904) TCGA-FU-A3HZ-01 6 152787212 152787212 G T SYNE1 Missense_Mutation p.S545Y 0.45 benign(0.372) TCGA-FU-A3HZ-01 6 153293413 153293413 G T FBXO5 Missense_Mutation p.F362L 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A3HZ-01 6 153296192 153296192 A C FBXO5 Missense_Mutation p.I223S 0.11 deleterious(0.01) benign(0.157) TCGA-FU-A3HZ-01 6 153332806 153332806 T C RGS17 Missense_Mutation p.Y179C 0.50 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 6 15517424 15517424 T C JARID2 Silent p.C1161C 0.38 TCGA-FU-A3HZ-01 6 155761194 155761194 C A NOX3 Missense_Mutation p.M188I 0.48 tolerated(0.91) benign(0.003) TCGA-FU-A3HZ-01 6 157519969 157519969 T G ARID1B Nonsense_Mutation p.Y1346* 0.44 TCGA-FU-A3HZ-01 6 158910645 158910645 T G TULP4 Missense_Mutation p.I504M 0.14 deleterious(0.02) benign(0.008) TCGA-FU-A3HZ-01 6 158932257 158932257 T G TULP4 3'UTR 0.52 TCGA-FU-A3HZ-01 6 159190421 159190421 C A EZR Missense_Mutation p.K427N 0.21 tolerated(0.06) benign(0.371) TCGA-FU-A3HZ-01 6 159457048 159457048 C A TAGAP Missense_Mutation p.Q669H 0.33 tolerated(0.15) benign(0.014) TCGA-FU-A3HZ-01 6 161174003 161174003 T C PLG Silent p.G781G 0.35 TCGA-FU-A3HZ-01 6 161470031 161470031 G T MAP3K4 Missense_Mutation p.D243Y 0.29 deleterious(0) probably_damaging(0.95) TCGA-FU-A3HZ-01 6 161587300 161587300 C T AGPAT4 Missense_Mutation p.E110K 0.39 deleterious(0) probably_damaging(0.934) TCGA-FU-A3HZ-01 6 163989803 163989803 C A QKI Intron 0.40 TCGA-FU-A3HZ-01 6 165703536 165703536 T G C6orf118 Missense_Mutation p.I381L 0.42 tolerated(0.32) benign(0.097) TCGA-FU-A3HZ-01 6 165746463 165746463 G T PDE10A 3'UTR 0.41 TCGA-FU-A3HZ-01 6 167754124 167754124 C A TTLL2 Missense_Mutation p.P246T 0.33 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 6 167786670 167786670 T C TCP10 Missense_Mutation p.D323G 0.24 tolerated_low_confidence(0.42) benign(0) TCGA-FU-A3HZ-01 6 170201333 170201333 G T LINC00574 RNA 0.50 TCGA-FU-A3HZ-01 6 170892755 170892755 C A PDCD2 Nonsense_Mutation p.E122* 0.33 TCGA-FU-A3HZ-01 6 24777516 24777516 G T GMNN Missense_Mutation p.E14D 0.43 tolerated(0.23) probably_damaging(0.915) TCGA-FU-A3HZ-01 6 25620363 25620363 C A LRRC16A 3'UTR 0.39 TCGA-FU-A3HZ-01 6 25770363 25770363 C T SLC17A4 Silent p.F122F 0.45 TCGA-FU-A3HZ-01 6 25868604 25868604 C A SLC17A3 Missense_Mutation p.K4N 0.32 tolerated(0.5) benign(0.09) TCGA-FU-A3HZ-01 6 25917219 25917219 A G SLC17A2 Missense_Mutation p.I249T 0.38 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 6 26091204 26091204 G A HFE Missense_Mutation p.R71Q 0.35 tolerated(0.41) possibly_damaging(0.875) TCGA-FU-A3HZ-01 6 27369123 27369123 G T ZNF391 Missense_Mutation p.R325I 0.64 deleterious(0.04) probably_damaging(0.987) TCGA-FU-A3HZ-01 6 28228147 28228147 C A NKAPL Missense_Mutation p.S333Y 0.29 deleterious(0) possibly_damaging(0.684) TCGA-FU-A3HZ-01 6 28269225 28269225 A C PGBD1 Missense_Mutation p.N532H 0.44 deleterious(0.03) probably_damaging(1) TCGA-FU-A3HZ-01 6 28474178 28474178 C A GPX6 Missense_Mutation p.K90N 0.42 tolerated(0.23) benign(0.033) TCGA-FU-A3HZ-01 6 29364435 29364435 C T OR12D2 5'UTR 0.33 TCGA-FU-A3HZ-01 6 29430936 29430936 A T OR2H1 3'UTR 0.48 TCGA-FU-A3HZ-01 6 29589055 29589055 A G GABBR1 Silent p.R382R 0.16 TCGA-FU-A3HZ-01 6 29692208 29692208 A G HLA-F Missense_Mutation p.E198G 0.11 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-FU-A3HZ-01 6 29911919 29911919 A C HLA-A Missense_Mutation p.T214P 0.40 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-FU-A3HZ-01 6 29974674 29974674 C T ZNRD1-AS1 Intron 0.43 TCGA-FU-A3HZ-01 6 30105115 30105115 C A TRIM40 Missense_Mutation p.S101Y 0.37 deleterious(0.01) benign(0.405) TCGA-FU-A3HZ-01 6 30309562 30309562 C T TRIM39 Silent p.F361F 0.41 TCGA-FU-A3HZ-01 6 31918952 31918952 A C CFB Missense_Mutation p.K1131N 0.18 deleterious(0.02) possibly_damaging(0.897) TCGA-FU-A3HZ-01 6 31933633 31933633 G A SKIV2L Missense_Mutation p.R682H 0.10 deleterious(0.01) possibly_damaging(0.806) TCGA-FU-A3HZ-01 6 31963801 31963801 G T C4A Silent p.L1100L 0.32 TCGA-FU-A3HZ-01 6 32800468 32800468 T G TAP2 Missense_Mutation p.E360A 0.33 tolerated(0.21) benign(0.145) TCGA-FU-A3HZ-01 6 33169685 33169685 C T SLC39A7 Missense_Mutation p.A192V 0.41 deleterious(0) probably_damaging(0.951) TCGA-FU-A3HZ-01 6 33281019 33281019 C A TAPBP Missense_Mutation p.E148D 0.26 tolerated(0.1) benign(0.001) TCGA-FU-A3HZ-01 6 33391280 33391280 A T SYNGAP1 Missense_Mutation p.T32S 0.12 deleterious(0.02) benign(0.037) TCGA-FU-A3HZ-01 6 34214288 34214288 G T C6orf1 3'UTR 0.45 TCGA-FU-A3HZ-01 6 35088206 35088206 C A TCP11 Missense_Mutation p.E324D 0.29 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 6 35391729 35391729 G A PPARD Missense_Mutation p.R144H 0.20 deleterious(0) probably_damaging(0.953) TCGA-FU-A3HZ-01 6 36566676 36566676 G T SRSF3 Missense_Mutation p.R86I 0.35 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 6 37247081 37247081 T C TBC1D22B Missense_Mutation p.F39L 0.17 tolerated(1) benign(0) TCGA-FU-A3HZ-01 6 37426574 37426574 G A CMTR1 Missense_Mutation p.E322K 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-FU-A3HZ-01 6 37443917 37443917 G T CMTR1 Missense_Mutation p.E684D 0.23 tolerated(0.08) benign(0.002) TCGA-FU-A3HZ-01 6 38738332 38738332 G T DNAH8 Missense_Mutation p.E370D 0.38 benign(0.049) TCGA-FU-A3HZ-01 6 38834409 38834409 A C DNAH8 Missense_Mutation p.K1964Q 0.07 probably_damaging(0.999) TCGA-FU-A3HZ-01 6 38881726 38881726 G A DNAH8 Missense_Mutation p.E3104K 0.47 benign(0.002) TCGA-FU-A3HZ-01 6 38893972 38893972 G T DNAH8 Nonsense_Mutation p.E3485* 0.53 TCGA-FU-A3HZ-01 6 39053697 39053697 C T GLP1R Missense_Mutation p.R414W 0.30 tolerated(0.12) benign(0.027) TCGA-FU-A3HZ-01 6 39158729 39158729 G T KCNK5 Silent p.L479L 0.31 TCGA-FU-A3HZ-01 6 39290160 39290160 G A KCNK16 Missense_Mutation p.R53C 0.29 deleterious(0.01) probably_damaging(0.911) TCGA-FU-A3HZ-01 6 40312275 40312275 G A LINC00951 RNA 0.42 TCGA-FU-A3HZ-01 6 40359788 40359788 C T LRFN2 Missense_Mutation p.R755H 0.65 deleterious(0) probably_damaging(0.987) TCGA-FU-A3HZ-01 6 4087923 4087923 G A C6orf201 Silent p.T16T 0.33 TCGA-FU-A3HZ-01 6 4125362 4125362 T C C6orf201 Intron 0.23 TCGA-FU-A3HZ-01 6 4130835 4130835 G T C6orf201 3'UTR 0.24 TCGA-FU-A3HZ-01 6 42834459 42834459 T C GLTSCR1L 3'UTR 0.12 TCGA-FU-A3HZ-01 6 43253974 43253974 T C TTBK1 3'UTR 0.47 TCGA-FU-A3HZ-01 6 44243269 44243269 A T TMEM151B Nonsense_Mutation p.K236* 0.35 TCGA-FU-A3HZ-01 6 44328224 44328224 C T SPATS1 Missense_Mutation p.S110F 0.43 deleterious(0.01) probably_damaging(0.943) TCGA-FU-A3HZ-01 6 45480058 45480058 C T RUNX2 Missense_Mutation p.S312F 0.36 deleterious(0.01) possibly_damaging(0.701) TCGA-FU-A3HZ-01 6 45516312 45516312 C A RUNX2 3'UTR 0.20 TCGA-FU-A3HZ-01 6 45517939 45517939 T C RUNX2 3'UTR 0.58 TCGA-FU-A3HZ-01 6 46047901 46047901 C A CLIC5 Nonsense_Mutation p.E27* 0.36 TCGA-FU-A3HZ-01 6 46214590 46214590 G T RCAN2 Missense_Mutation p.L156I 0.26 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 6 46659321 46659321 T G TDRD6 Missense_Mutation p.I1152M 0.19 tolerated(0.07) benign(0.407) TCGA-FU-A3HZ-01 6 46660606 46660606 G T TDRD6 Missense_Mutation p.D1581Y 0.23 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 6 46675822 46675822 A C PLA2G7 Missense_Mutation p.F316V 0.36 deleterious(0) probably_damaging(0.98) TCGA-FU-A3HZ-01 6 46803277 46803277 C T MEP1A Missense_Mutation p.A692V 0.41 tolerated(0.11) benign(0.19) TCGA-FU-A3HZ-01 6 46991799 46991799 G T GPR110 Silent p.V144V 0.23 TCGA-FU-A3HZ-01 6 47649621 47649621 G A GPR111 Silent p.E442E 0.20 TCGA-FU-A3HZ-01 6 47650411 47650411 G T GPR111 Missense_Mutation p.D706Y 0.40 deleterious_low_confidence(0) benign(0.046) TCGA-FU-A3HZ-01 6 49663612 49663612 T C CRISP2 Missense_Mutation p.T181A 0.46 deleterious(0.02) benign(0.006) TCGA-FU-A3HZ-01 6 54804695 54804695 C T FAM83B Missense_Mutation p.S309L 0.30 tolerated(0.07) possibly_damaging(0.559) TCGA-FU-A3HZ-01 6 55128539 55128539 C A HCRTR2 Missense_Mutation p.F227L 0.32 tolerated(1) benign(0.004) TCGA-FU-A3HZ-01 6 55739287 55739287 C T BMP5 Missense_Mutation p.R126H 0.30 tolerated(0.06) benign(0.005) TCGA-FU-A3HZ-01 6 56366458 56366458 C A DST Nonsense_Mutation p.E3911* 0.34 TCGA-FU-A3HZ-01 6 56483273 56483273 G T DST Intron 0.42 TCGA-FU-A3HZ-01 6 56918562 56918562 G A KIAA1586 Missense_Mutation p.R422Q 0.29 tolerated(0.21) benign(0.021) TCGA-FU-A3HZ-01 6 56993563 56993563 G T ZNF451 Nonsense_Mutation p.E117* 0.45 TCGA-FU-A3HZ-01 6 6174837 6174837 C T F13A1 Missense_Mutation p.D575N 0.32 tolerated(0.31) benign(0.001) TCGA-FU-A3HZ-01 6 69348868 69348868 C A BAI3 Missense_Mutation p.L101I 0.32 deleterious(0.03) probably_damaging(0.931) TCGA-FU-A3HZ-01 6 70099385 70099385 A C BAI3 3'UTR 0.33 TCGA-FU-A3HZ-01 6 70856566 70856566 C T COL19A1 Missense_Mutation p.P596S 0.43 tolerated(0.09) probably_damaging(0.999) TCGA-FU-A3HZ-01 6 71298317 71298317 G T C6orf57 Splice_Site p.X73_splice 0.43 TCGA-FU-A3HZ-01 6 72975721 72975721 G A RIMS1 Missense_Mutation p.D1123N 0.30 tolerated(0.15) probably_damaging(0.996) TCGA-FU-A3HZ-01 6 73110490 73110490 C T RIMS1 3'Flank 0.45 TCGA-FU-A3HZ-01 6 73751728 73751728 C T KCNQ5 Nonsense_Mutation p.R187* 0.43 TCGA-FU-A3HZ-01 6 73905141 73905141 C A KCNQ5 3'UTR 0.50 TCGA-FU-A3HZ-01 6 74019283 74019283 C A KHDC1 Missense_Mutation p.R52I 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-FU-A3HZ-01 6 74019363 74019363 G T KHDC1 Silent p.I25I 0.33 TCGA-FU-A3HZ-01 6 74492449 74492449 G T CD109 Missense_Mutation p.E692D 0.30 deleterious(0) probably_damaging(0.922) TCGA-FU-A3HZ-01 6 80195111 80195111 T G LCA5 3'UTR 0.22 TCGA-FU-A3HZ-01 6 80631439 80631439 T C ELOVL4 Silent p.R148R 0.38 TCGA-FU-A3HZ-01 6 80749469 80749469 C T TTK Silent p.Y729Y 0.33 TCGA-FU-A3HZ-01 6 8079824 8079824 A C EEF1E1 3'UTR 0.29 TCGA-FU-A3HZ-01 6 82455965 82455965 A C FAM46A 3'UTR 0.28 TCGA-FU-A3HZ-01 6 83829520 83829520 C T DOPEY1 Missense_Mutation p.P312S 0.28 tolerated(0.4) benign(0.408) TCGA-FU-A3HZ-01 6 83933564 83933564 G T ME1 Missense_Mutation p.S455Y 0.46 deleterious(0.02) probably_damaging(0.991) TCGA-FU-A3HZ-01 6 84417533 84417533 C A SNAP91 Missense_Mutation p.K38N 0.44 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 6 84836151 84836151 C A KIAA1009 Missense_Mutation p.K1317N 0.27 tolerated(0.11) benign(0.33) TCGA-FU-A3HZ-01 6 86267721 86267721 C A SNX14 Nonsense_Mutation p.E203* 0.38 TCGA-FU-A3HZ-01 6 89616098 89616098 C A RNGTT Missense_Mutation p.E143D 0.18 deleterious(0.01) probably_damaging(0.948) TCGA-FU-A3HZ-01 6 89808347 89808347 A C SRSF12 Missense_Mutation p.F246V 0.24 tolerated_low_confidence(0.08) benign(0.003) TCGA-FU-A3HZ-01 6 89888707 89888707 C A GABRR1 Missense_Mutation p.D408Y 0.39 deleterious(0.03) possibly_damaging(0.718) TCGA-FU-A3HZ-01 6 90036720 90036720 T G UBE2J1 3'UTR 0.19 TCGA-FU-A3HZ-01 6 90394655 90394655 G T MDN1 Missense_Mutation p.F3923L 0.36 possibly_damaging(0.8) TCGA-FU-A3HZ-01 6 90572018 90572018 A C CASP8AP2 RNA 0.40 TCGA-FU-A3HZ-01 6 93952723 93952723 G T EPHA7 3'UTR 0.28 TCGA-FU-A3HZ-01 6 96657740 96657740 T G FUT9 3'UTR 0.46 TCGA-FU-A3HZ-01 7 100165796 100165796 T G AGFG2 3'UTR 0.30 TCGA-FU-A3HZ-01 7 100276365 100276365 G A GNB2 Missense_Mutation p.D322N 0.41 tolerated(0.17) benign(0.149) TCGA-FU-A3HZ-01 7 100348282 100348282 C A ZAN Missense_Mutation p.F428L 0.39 benign(0.41) TCGA-FU-A3HZ-01 7 100608678 100608678 A G MUC3A Intron 0.18 TCGA-FU-A3HZ-01 7 100648305 100648305 G T MUC12 Nonsense_Mutation p.E4821* 0.33 TCGA-FU-A3HZ-01 7 100683573 100683573 T C MUC17 Missense_Mutation p.V2959A 0.10 possibly_damaging(0.84) TCGA-FU-A3HZ-01 7 100816802 100816802 C A NAT16 Splice_Site p.X105_splice 0.38 TCGA-FU-A3HZ-01 7 103214561 103214561 G T RELN Missense_Mutation p.P1497T 0.42 deleterious(0.03) benign(0.19) TCGA-FU-A3HZ-01 7 104547217 104547217 C A LHFPL3 3'UTR 0.48 TCGA-FU-A3HZ-01 7 105029109 105029109 C A SRPK2 Missense_Mutation p.E19D 0.36 tolerated(0.33) unknown(0) TCGA-FU-A3HZ-01 7 106842122 106842122 C A COG5 3'Flank 0.26 TCGA-FU-A3HZ-01 7 107807496 107807496 T G NRCAM Missense_Mutation p.E1112D 0.72 tolerated(0.13) benign(0.02) TCGA-FU-A3HZ-01 7 107807498 107807498 C A NRCAM Nonsense_Mutation p.E1112* 0.72 TCGA-FU-A3HZ-01 7 112127090 112127090 C T LSMEM1 Silent p.F80F 0.38 TCGA-FU-A3HZ-01 7 112723260 112723260 A C GPR85 3'UTR 0.40 TCGA-FU-A3HZ-01 7 1131452 1131452 G A GPER1 Missense_Mutation p.E30K 0.38 tolerated_low_confidence(0.31) benign(0.002) TCGA-FU-A3HZ-01 7 11450835 11450835 G A THSD7A Missense_Mutation p.A1266V 0.32 deleterious(0.03) benign(0.001) TCGA-FU-A3HZ-01 7 115580805 115580805 A G TFEC Missense_Mutation p.F282L 0.33 tolerated(0.14) probably_damaging(0.967) TCGA-FU-A3HZ-01 7 115750964 115750964 C A TFEC 5'UTR 0.41 TCGA-FU-A3HZ-01 7 116201142 116201142 T G CAV1 3'UTR 0.33 TCGA-FU-A3HZ-01 7 116528223 116528223 G T CAPZA2 Nonsense_Mutation p.E28* 0.52 TCGA-FU-A3HZ-01 7 117251805 117251805 G T CFTR Nonsense_Mutation p.E1104* 0.30 TCGA-FU-A3HZ-01 7 117351122 117351122 T A CTTNBP2 3'UTR 0.25 TCGA-FU-A3HZ-01 7 121608065 121608065 C A PTPRZ1 Missense_Mutation p.S62Y 0.58 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 7 122338779 122338779 C T RNF133 Missense_Mutation p.S65N 0.35 tolerated(0.98) benign(0.012) TCGA-FU-A3HZ-01 7 122635279 122635279 G A TAS2R16 Missense_Mutation p.T137I 0.33 deleterious(0) benign(0.342) TCGA-FU-A3HZ-01 7 122635740 122635740 A C TAS2R16 5'UTR 0.23 TCGA-FU-A3HZ-01 7 123303889 123303889 C A LMOD2 3'UTR 0.29 TCGA-FU-A3HZ-01 7 123508682 123508682 C T HYAL4 Nonsense_Mutation p.Q119* 0.33 TCGA-FU-A3HZ-01 7 126883055 126883055 C A GRM8 Missense_Mutation p.K68N 0.38 tolerated(0.55) probably_damaging(0.987) TCGA-FU-A3HZ-01 7 127014976 127014976 A C ZNF800 Silent p.T138T 0.48 TCGA-FU-A3HZ-01 7 133692523 133692523 T G EXOC4 Missense_Mutation p.I874M 0.40 deleterious(0) possibly_damaging(0.901) TCGA-FU-A3HZ-01 7 133943057 133943057 T C LRGUK Silent p.C749C 0.43 TCGA-FU-A3HZ-01 7 134655213 134655213 T G CALD1 3'Flank 0.38 TCGA-FU-A3HZ-01 7 135333233 135333233 C T NUP205 Nonsense_Mutation p.R1990* 0.33 TCGA-FU-A3HZ-01 7 135613554 135613554 T C MTPN 3'UTR 0.56 TCGA-FU-A3HZ-01 7 136700256 136700256 G A CHRM2 Missense_Mutation p.S215N 0.52 tolerated(0.3) possibly_damaging(0.678) TCGA-FU-A3HZ-01 7 138588463 138588463 C A KIAA1549 Missense_Mutation p.E1180D 0.45 tolerated(0.62) probably_damaging(0.999) TCGA-FU-A3HZ-01 7 140033724 140033724 G A SLC37A3 3'UTR 0.45 TCGA-FU-A3HZ-01 7 140301317 140301317 C A DENND2A Missense_Mutation p.R294I 0.38 deleterious(0.01) possibly_damaging(0.836) TCGA-FU-A3HZ-01 7 140302122 140302122 T G DENND2A Silent p.R26R 0.12 TCGA-FU-A3HZ-01 7 141754623 141754623 A C MGAM Missense_Mutation p.T1077P 0.08 deleterious(0.02) benign(0.002) TCGA-FU-A3HZ-01 7 141969373 141969373 G A U66059.29 RNA 0.62 TCGA-FU-A3HZ-01 7 142622595 142622595 C T TRPV5 Intron 0.10 TCGA-FU-A3HZ-01 7 143510107 143510107 T G RP11-61L23.2 RNA 0.09 TCGA-FU-A3HZ-01 7 144096235 144096235 G A NOBOX Missense_Mutation p.A426V 0.30 deleterious(0.01) benign(0.305) TCGA-FU-A3HZ-01 7 14652969 14652969 C A DGKB Nonsense_Mutation p.E453* 0.45 TCGA-FU-A3HZ-01 7 148802632 148802632 C A ZNF425 Nonsense_Mutation p.E111* 0.38 TCGA-FU-A3HZ-01 7 149172564 149172564 T G ZNF746 Missense_Mutation p.K283N 0.09 tolerated(0.09) probably_damaging(0.978) TCGA-FU-A3HZ-01 7 149557897 149557897 G A ZNF862 Missense_Mutation p.D550N 0.50 deleterious(0.04) possibly_damaging(0.856) TCGA-FU-A3HZ-01 7 150324902 150324902 C T GIMAP6 Missense_Mutation p.V262M 0.42 tolerated(0.28) benign(0.01) TCGA-FU-A3HZ-01 7 150698430 150698430 G A NOS3 Missense_Mutation p.V449M 0.50 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 7 151053226 151053226 T G NUB1 Missense_Mutation p.V228G 0.29 tolerated(0.31) benign(0.167) TCGA-FU-A3HZ-01 7 154751640 154751640 G A PAXIP1 Missense_Mutation p.A813V 0.38 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 7 155301747 155301747 T G CNPY1 5'UTR 0.20 TCGA-FU-A3HZ-01 7 158662589 158662589 A C WDR60 Missense_Mutation p.K20T 0.37 deleterious(0) benign(0.102) TCGA-FU-A3HZ-01 7 158851185 158851185 G T VIPR2 Missense_Mutation p.L148M 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-FU-A3HZ-01 7 16816705 16816705 T G TSPAN13 Missense_Mutation p.F90L 0.26 tolerated(0.07) benign(0.09) TCGA-FU-A3HZ-01 7 17379822 17379822 A G AHR Silent p.V791V 0.53 TCGA-FU-A3HZ-01 7 18066544 18066544 G T PRPS1L1 Silent p.R288R 0.39 TCGA-FU-A3HZ-01 7 18669010 18669010 A C HDAC9 Missense_Mutation p.K234N 0.26 deleterious(0) possibly_damaging(0.888) TCGA-FU-A3HZ-01 7 19184566 19184566 G A FERD3L Silent p.I140I 0.16 TCGA-FU-A3HZ-01 7 20198624 20198624 C A MACC1 Nonsense_Mutation p.E454* 0.21 TCGA-FU-A3HZ-01 7 20453080 20453080 T G ITGB8 3'UTR 0.40 TCGA-FU-A3HZ-01 7 20738062 20738062 T G ABCB5 Missense_Mutation p.I681M 0.30 deleterious(0.02) possibly_damaging(0.751) TCGA-FU-A3HZ-01 7 21675628 21675628 A G DNAH11 Missense_Mutation p.E1552G 0.46 possibly_damaging(0.905) TCGA-FU-A3HZ-01 7 21677310 21677310 T G DNAH11 Missense_Mutation p.L1608V 0.40 benign(0.409) TCGA-FU-A3HZ-01 7 21904205 21904205 G T DNAH11 Missense_Mutation p.R3816L 0.38 possibly_damaging(0.843) TCGA-FU-A3HZ-01 7 21945150 21945150 G A CDCA7L Nonsense_Mutation p.R341* 0.56 TCGA-FU-A3HZ-01 7 22158121 22158121 A C RAPGEF5 3'UTR 0.10 TCGA-FU-A3HZ-01 7 22532284 22532284 G A STEAP1B Missense_Mutation p.S221F 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-FU-A3HZ-01 7 2294773 2294773 T G SNX8 Missense_Mutation p.K439T 0.08 tolerated(0.19) probably_damaging(0.931) TCGA-FU-A3HZ-01 7 23353262 23353262 C A IGF2BP3 Missense_Mutation p.R469I 0.48 deleterious(0.02) probably_damaging(0.974) TCGA-FU-A3HZ-01 7 24854690 24854690 C A OSBPL3 Silent p.V720V 0.46 TCGA-FU-A3HZ-01 7 27202066 27202066 A C HOXA9 3'UTR 0.27 TCGA-FU-A3HZ-01 7 27224337 27224337 A T HOXA11 Missense_Mutation p.F143I 0.44 deleterious(0) probably_damaging(0.937) TCGA-FU-A3HZ-01 7 28860116 28860116 G T CREB5 3'UTR 0.44 TCGA-FU-A3HZ-01 7 2974166 2974166 G A CARD11 Missense_Mutation p.S480L 0.41 deleterious(0.01) probably_damaging(0.95) TCGA-FU-A3HZ-01 7 34917813 34917813 C A NPSR1 3'UTR 0.42 TCGA-FU-A3HZ-01 7 35242127 35242127 C T TBX20 Missense_Mutation p.R420Q 0.33 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-FU-A3HZ-01 7 37936561 37936561 A C NME8 Missense_Mutation p.K545T 0.30 deleterious(0.03) possibly_damaging(0.654) TCGA-FU-A3HZ-01 7 38289053 38289053 A C TRGC2 Missense_Mutation p.I41S 0.26 deleterious(0) benign(0.092) TCGA-FU-A3HZ-01 7 38299698 38299698 C T TRGC1 Silent p.E171E 0.25 TCGA-FU-A3HZ-01 7 38301796 38301796 C A TRGC1 Missense_Mutation p.D119Y 0.30 tolerated(0.06) benign(0.207) TCGA-FU-A3HZ-01 7 38339493 38339493 G T TRGV10 Missense_Mutation p.S91Y 0.24 tolerated(0.38) benign(0.283) TCGA-FU-A3HZ-01 7 44560680 44560680 C T NPC1L1 Silent p.T997T 0.41 TCGA-FU-A3HZ-01 7 45024983 45024983 C T SNHG15 RNA 0.31 TCGA-FU-A3HZ-01 7 47323307 47323307 T A TNS3 Missense_Mutation p.D1362V 0.25 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 7 47385795 47385795 T C TNS3 Missense_Mutation p.D814G 0.15 tolerated(0.33) benign(0.071) TCGA-FU-A3HZ-01 7 48081074 48081074 G T C7orf57 Missense_Mutation p.D67Y 0.32 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 7 48285128 48285128 G A ABCA13 Silent p.E470E 0.54 TCGA-FU-A3HZ-01 7 48312174 48312174 T C ABCA13 Missense_Mutation p.Y971H 0.17 benign(0.01) TCGA-FU-A3HZ-01 7 48315852 48315852 A C ABCA13 Missense_Mutation p.N2197H 0.44 possibly_damaging(0.885) TCGA-FU-A3HZ-01 7 48318505 48318505 G T ABCA13 Nonsense_Mutation p.E2572* 0.33 TCGA-FU-A3HZ-01 7 4959852 4959852 G A MMD2 Silent p.F80F 0.50 TCGA-FU-A3HZ-01 7 50135973 50135973 C T C7orf72 Missense_Mutation p.R98W 0.58 tolerated(0.06) probably_damaging(0.998) TCGA-FU-A3HZ-01 7 50467665 50467665 G A IKZF1 Silent p.E258E 0.13 TCGA-FU-A3HZ-01 7 5330412 5330412 G A SLC29A4 Silent p.A73A 0.08 TCGA-FU-A3HZ-01 7 55863714 55863714 T G SEPT14 Missense_Mutation p.K397N 0.11 deleterious(0.02) benign(0.357) TCGA-FU-A3HZ-01 7 55902133 55902133 C T SEPT14 Silent p.A235A 0.19 TCGA-FU-A3HZ-01 7 57188757 57188757 T G ZNF479 Missense_Mutation p.K122T 0.40 deleterious(0.01) benign(0.011) TCGA-FU-A3HZ-01 7 57528744 57528744 T C ZNF716 Missense_Mutation p.S193P 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-FU-A3HZ-01 7 5780712 5780712 A G RNF216 Silent p.G312G 0.26 TCGA-FU-A3HZ-01 7 64292752 64292752 C T ZNF138 3'Flank 0.31 TCGA-FU-A3HZ-01 7 64526724 64526724 G A SNORA22 3'Flank 0.38 TCGA-FU-A3HZ-01 7 66098334 66098334 G A KCTD7 Missense_Mutation p.E73K 0.38 tolerated(0.11) possibly_damaging(0.59) TCGA-FU-A3HZ-01 7 66532313 66532313 C A TYW1 Missense_Mutation p.F399L 0.12 deleterious(0.03) benign(0.102) TCGA-FU-A3HZ-01 7 72416226 72416226 T G POM121 Missense_Mutation p.F946V 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-FU-A3HZ-01 7 73753046 73753046 C T CLIP2 Silent p.F130F 0.38 TCGA-FU-A3HZ-01 7 75046868 75046868 T C POM121C 3'UTR 0.42 TCGA-FU-A3HZ-01 7 75518124 75518124 C T RHBDD2 3'UTR 0.36 TCGA-FU-A3HZ-01 7 79847347 79847347 T G GNAI1 3'UTR 0.20 TCGA-FU-A3HZ-01 7 81642812 81642812 T G CACNA2D1 Missense_Mutation p.I413L 0.42 deleterious(0.02) probably_damaging(0.995) TCGA-FU-A3HZ-01 7 82763807 82763807 C A PCLO Missense_Mutation p.R1020I 0.37 unknown(0) TCGA-FU-A3HZ-01 7 83590205 83590205 C A SEMA3A 3'UTR 0.26 TCGA-FU-A3HZ-01 7 84680064 84680064 C A SEMA3D Intron 0.21 TCGA-FU-A3HZ-01 7 87011272 87011272 T C CROT Missense_Mutation p.V370A 0.38 tolerated(0.12) benign(0.034) TCGA-FU-A3HZ-01 7 87028183 87028183 A C CROT 3'UTR 0.38 TCGA-FU-A3HZ-01 7 87537139 87537139 C T DBF4 Silent p.D562D 0.42 TCGA-FU-A3HZ-01 7 87810903 87810903 G A ADAM22 Missense_Mutation p.R831Q 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 7 88423783 88423783 G A C7orf62 Silent p.L158L 0.25 TCGA-FU-A3HZ-01 7 88962847 88962847 C T ZNF804B Missense_Mutation p.T184I 0.36 tolerated(0.68) benign(0.141) TCGA-FU-A3HZ-01 7 892253 892253 C T SUN1 Nonsense_Mutation p.R287* 0.39 TCGA-FU-A3HZ-01 7 89909023 89909023 G A C7orf63 Silent p.L396L 0.19 TCGA-FU-A3HZ-01 7 89933282 89933282 G T C7orf63 Splice_Site p.X684_splice 0.41 TCGA-FU-A3HZ-01 7 89934126 89934126 G T C7orf63 Missense_Mutation p.D753Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 7 90043780 90043781 - A CLDN12 3'UTR 0.14 TCGA-FU-A3HZ-01 7 90839641 90839641 T A CDK14 3'UTR 0.45 TCGA-FU-A3HZ-01 7 91504019 91504019 C A MTERF Missense_Mutation p.R30I 0.43 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-FU-A3HZ-01 7 92733737 92733737 C A SAMD9 Missense_Mutation p.E558D 0.26 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 7 92735170 92735170 C A SAMD9 Missense_Mutation p.D81Y 0.37 deleterious(0.01) benign(0.126) TCGA-FU-A3HZ-01 7 92735353 92735353 T G SAMD9 Missense_Mutation p.N20H 0.29 tolerated(0.05) possibly_damaging(0.715) TCGA-FU-A3HZ-01 7 92764218 92764218 G A SAMD9L Missense_Mutation p.S356F 0.37 deleterious(0.05) benign(0.011) TCGA-FU-A3HZ-01 7 93538876 93538876 C A GNGT1 Intron 0.48 TCGA-FU-A3HZ-01 7 94174995 94174995 A C CASD1 Missense_Mutation p.I539L 0.34 tolerated(0.51) benign(0.001) TCGA-FU-A3HZ-01 7 94295816 94295816 A C PEG10 3'UTR 0.38 TCGA-FU-A3HZ-01 7 94297441 94297441 G A PEG10 3'UTR 0.25 TCGA-FU-A3HZ-01 7 95053833 95053833 C T PON2 Missense_Mutation p.G47R 0.32 deleterious(0.01) probably_damaging(0.969) TCGA-FU-A3HZ-01 7 95442584 95442584 G T DYNC1I1 Silent p.S100S 0.38 TCGA-FU-A3HZ-01 7 97821550 97821550 G A LMTK2 Silent p.A591A 0.34 TCGA-FU-A3HZ-01 7 99036754 99036754 A G CPSF4 Missense_Mutation p.I17V 0.82 tolerated(0.62) benign(0.001) TCGA-FU-A3HZ-01 7 99054337 99054337 G A CPSF4 3'UTR 0.33 TCGA-FU-A3HZ-01 7 99950334 99950334 C G PILRB Intron 0.23 TCGA-FU-A3HZ-01 7 99971243 99971243 C A PILRA 5'UTR 0.28 TCGA-FU-A3HZ-01 8 101076270 101076270 C A RGS22 Missense_Mutation p.E242D 0.52 tolerated(0.15) benign(0.025) TCGA-FU-A3HZ-01 8 104337581 104337581 G A FZD6 Missense_Mutation p.R416Q 0.33 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 8 105456635 105456635 T C DPYS Missense_Mutation p.T212A 0.35 deleterious(0.01) possibly_damaging(0.532) TCGA-FU-A3HZ-01 8 105502517 105502517 G T LRP12 3'UTR 0.33 TCGA-FU-A3HZ-01 8 105521183 105521183 C T LRP12 Missense_Mutation p.E86K 0.31 deleterious(0.01) benign(0.052) TCGA-FU-A3HZ-01 8 106646569 106646569 C T ZFPM2 Silent p.C172C 0.12 TCGA-FU-A3HZ-01 8 110498980 110498980 T C PKHD1L1 Silent p.G3270G 0.10 TCGA-FU-A3HZ-01 8 113662424 113662424 G T CSMD3 Missense_Mutation p.N1053K 0.54 deleterious(0.03) probably_damaging(0.962) TCGA-FU-A3HZ-01 8 11617373 11617373 T G GATA4 3'UTR 0.65 TCGA-FU-A3HZ-01 8 11619398 11619398 T C C8orf49 Missense_Mutation p.V159A 0.10 tolerated_low_confidence(0.46) benign(0) TCGA-FU-A3HZ-01 8 116422965 116422965 G A TRPS1 3'UTR 0.16 TCGA-FU-A3HZ-01 8 119391662 119391662 C A SAMD12 Missense_Mutation p.Q200H 0.19 benign(0.216) TCGA-FU-A3HZ-01 8 119938835 119938835 T G TNFRSF11B Silent p.R239R 0.06 TCGA-FU-A3HZ-01 8 120569809 120569809 T G ENPP2 Missense_Mutation p.E900D 0.25 tolerated(0.35) benign(0.169) TCGA-FU-A3HZ-01 8 120596257 120596257 C T ENPP2 Missense_Mutation p.G519E 0.29 deleterious(0.04) possibly_damaging(0.465) TCGA-FU-A3HZ-01 8 123964315 123964315 C T ZHX2 Missense_Mutation p.P189S 0.17 tolerated(0.45) benign(0.001) TCGA-FU-A3HZ-01 8 124707747 124707747 G A ANXA13 Silent p.L197L 0.17 TCGA-FU-A3HZ-01 8 12882279 12882279 C A KIAA1456 3'UTR 0.20 TCGA-FU-A3HZ-01 8 12884786 12884786 C T KIAA1456 3'UTR 0.28 TCGA-FU-A3HZ-01 8 131792625 131792625 A C ADCY8 3'UTR 0.21 TCGA-FU-A3HZ-01 8 133859909 133859909 T G PHF20L1 3'UTR 0.43 TCGA-FU-A3HZ-01 8 134477189 134477189 G A ST3GAL1 Missense_Mutation p.A172V 0.36 possibly_damaging(0.896) TCGA-FU-A3HZ-01 8 136659627 136659627 C T KHDRBS3 3'UTR 0.28 TCGA-FU-A3HZ-01 8 139144612 139144612 G T FAM135B 3'UTR 0.60 TCGA-FU-A3HZ-01 8 139163664 139163664 C T FAM135B Silent p.E1018E 0.24 TCGA-FU-A3HZ-01 8 139380195 139380195 G A FAM135B Missense_Mutation p.S11L 0.35 deleterious(0) benign(0.075) TCGA-FU-A3HZ-01 8 139629177 139629177 A C COL22A1 Missense_Mutation p.S1284A 0.50 unknown(0) TCGA-FU-A3HZ-01 8 141813692 141813692 C A PTK2 Missense_Mutation p.D309Y 0.33 deleterious(0.03) possibly_damaging(0.774) TCGA-FU-A3HZ-01 8 143694847 143694847 C A ARC Missense_Mutation p.K262N 0.40 tolerated(0.1) possibly_damaging(0.714) TCGA-FU-A3HZ-01 8 143784515 143784515 T G LY6K Missense_Mutation p.F75C 0.51 deleterious(0) probably_damaging(0.98) TCGA-FU-A3HZ-01 8 144520231 144520231 G T ZC3H3 Missense_Mutation p.L948M 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-FU-A3HZ-01 8 144896062 144896062 G A SCRIB Silent p.I94I 0.55 TCGA-FU-A3HZ-01 8 144919847 144919847 G A NRBP2 Silent p.F307F 0.16 TCGA-FU-A3HZ-01 8 146036153 146036153 A G ZNF517 3'Flank 0.50 TCGA-FU-A3HZ-01 8 146156819 146156819 G A ZNF16 Missense_Mutation p.R452W 0.21 deleterious(0.04) possibly_damaging(0.901) TCGA-FU-A3HZ-01 8 15095119 15095119 G A SGCZ Missense_Mutation p.T5M 0.27 tolerated(0.06) benign(0.098) TCGA-FU-A3HZ-01 8 16007814 16007814 G A MSR1 Missense_Mutation p.P302L 0.23 deleterious(0.01) possibly_damaging(0.905) TCGA-FU-A3HZ-01 8 16032763 16032763 T G MSR1 Missense_Mutation p.K50N 0.39 deleterious(0.01) probably_damaging(0.963) TCGA-FU-A3HZ-01 8 1651340 1651340 T G DLGAP2 3'UTR 0.19 TCGA-FU-A3HZ-01 8 16944530 16944530 A G MICU3 Missense_Mutation p.K279E 0.17 deleterious(0.04) benign(0.029) TCGA-FU-A3HZ-01 8 16979250 16979250 T A MICU3 3'UTR 0.36 TCGA-FU-A3HZ-01 8 17152856 17152856 C A VPS37A 3'UTR 0.38 TCGA-FU-A3HZ-01 8 17914946 17914946 T G ASAH1 3'UTR 0.23 TCGA-FU-A3HZ-01 8 18258559 18258559 G T NAT2 3'UTR 0.27 TCGA-FU-A3HZ-01 8 18258689 18258689 A C NAT2 3'UTR 0.43 TCGA-FU-A3HZ-01 8 1954217 1954217 C A KBTBD11 3'UTR 0.13 TCGA-FU-A3HZ-01 8 20070411 20070411 C T ATP6V1B2 Nonsense_Mutation p.R308* 0.37 TCGA-FU-A3HZ-01 8 2044137 2044137 T C MYOM2 Missense_Mutation p.S726P 0.29 deleterious(0.01) probably_damaging(0.948) TCGA-FU-A3HZ-01 8 21939815 21939815 T G DMTN 3'UTR 0.36 TCGA-FU-A3HZ-01 8 22455115 22455115 G A PDLIM2 3'Flank 0.43 TCGA-FU-A3HZ-01 8 22477463 22477463 A C CCAR2 3'UTR 0.40 TCGA-FU-A3HZ-01 8 22478590 22478590 G A BIN3 3'UTR 0.33 TCGA-FU-A3HZ-01 8 22884718 22884718 T G TNFRSF10B Missense_Mutation p.E288D 0.46 tolerated(0.22) possibly_damaging(0.831) TCGA-FU-A3HZ-01 8 23701849 23701849 T G STC1 3'UTR 0.45 TCGA-FU-A3HZ-01 8 24193265 24193265 G A ADAM28 Intron 0.39 TCGA-FU-A3HZ-01 8 24809849 24809849 T G CTD-2168K21.2 5'Flank 0.50 TCGA-FU-A3HZ-01 8 25156598 25156598 G T DOCK5 Missense_Mutation p.D249Y 0.33 deleterious(0.03) benign(0.015) TCGA-FU-A3HZ-01 8 25226173 25226173 A G DOCK5 Missense_Mutation p.T1124A 0.36 deleterious(0.02) benign(0.033) TCGA-FU-A3HZ-01 8 25227100 25227100 A G DOCK5 Missense_Mutation p.D1156G 0.11 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 8 25285770 25285770 A C KCTD9 3'UTR 0.32 TCGA-FU-A3HZ-01 8 25701761 25701761 A C EBF2 3'UTR 0.40 TCGA-FU-A3HZ-01 8 26217696 26217696 A C PPP2R2A Missense_Mutation p.K130Q 0.29 deleterious(0.01) possibly_damaging(0.883) TCGA-FU-A3HZ-01 8 27633950 27633950 A C ESCO2 Missense_Mutation p.K42T 0.29 tolerated(0.22) benign(0.003) TCGA-FU-A3HZ-01 8 29194615 29194615 G A DUSP4 Silent p.S371S 0.21 TCGA-FU-A3HZ-01 8 29961916 29961916 G A LEPROTL1 Missense_Mutation p.A65T 0.44 deleterious(0.04) probably_damaging(0.997) TCGA-FU-A3HZ-01 8 3000164 3000164 C T CSMD1 Missense_Mutation p.E2022K 0.55 probably_damaging(0.998) TCGA-FU-A3HZ-01 8 30038070 30038070 C T DCTN6 Missense_Mutation p.T133I 0.26 deleterious(0.04) possibly_damaging(0.616) TCGA-FU-A3HZ-01 8 30702941 30702941 C T TEX15 Missense_Mutation p.S1198N 0.50 tolerated(1) benign(0.001) TCGA-FU-A3HZ-01 8 30703714 30703714 A C TEX15 Missense_Mutation p.I940M 0.39 tolerated(0.26) benign(0.11) TCGA-FU-A3HZ-01 8 30704759 30704759 G T TEX15 Missense_Mutation p.S592Y 0.40 deleterious(0.03) probably_damaging(0.952) TCGA-FU-A3HZ-01 8 30705207 30705207 C A TEX15 Nonsense_Mutation p.E443* 0.39 TCGA-FU-A3HZ-01 8 3611469 3611469 A C CSMD1 Missense_Mutation p.F305C 0.26 probably_damaging(0.999) TCGA-FU-A3HZ-01 8 3611473 3611473 C A CSMD1 Nonsense_Mutation p.G304* 0.33 TCGA-FU-A3HZ-01 8 38684717 38684717 A C TACC1 Missense_Mutation p.D495A 0.48 tolerated(0.07) benign(0.081) TCGA-FU-A3HZ-01 8 39007329 39007329 G A ADAM32 Missense_Mutation p.G99E 0.41 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 8 39613390 39613390 T G ADAM2 Missense_Mutation p.K552Q 0.30 tolerated(0.34) benign(0.063) TCGA-FU-A3HZ-01 8 40011605 40011605 C A C8orf4 3'UTR 0.46 TCGA-FU-A3HZ-01 8 41519418 41519418 G A ANK1 Silent p.A1881A 0.48 TCGA-FU-A3HZ-01 8 4494910 4494910 A C CSMD1 Missense_Mutation p.L86V 0.13 benign(0.058) TCGA-FU-A3HZ-01 8 53573785 53573785 A C RB1CC1 Missense_Mutation p.L472W 0.41 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 8 57218217 57218217 G T SDR16C5 Missense_Mutation p.L259I 0.55 deleterious(0.01) possibly_damaging(0.744) TCGA-FU-A3HZ-01 8 59363647 59363647 C A UBXN2B 3'UTR 0.46 TCGA-FU-A3HZ-01 8 59495378 59495378 T G SDCBP 3'UTR 0.38 TCGA-FU-A3HZ-01 8 62546284 62546284 C A ASPH Missense_Mutation p.V298L 0.29 tolerated_low_confidence(0.52) benign(0.152) TCGA-FU-A3HZ-01 8 6669501 6669501 T C XKR5 RNA 0.41 TCGA-FU-A3HZ-01 8 67475762 67475762 T G MYBL1 3'UTR 0.31 TCGA-FU-A3HZ-01 8 69633640 69633640 G A C8orf34 Missense_Mutation p.E458K 0.22 tolerated(0.1) benign(0.033) TCGA-FU-A3HZ-01 8 70550804 70550804 G A SULF1 Silent p.E784E 0.37 TCGA-FU-A3HZ-01 8 70617305 70617305 C G SLCO5A1 Missense_Mutation p.S528T 0.33 tolerated(0.21) benign(0.16) TCGA-FU-A3HZ-01 8 71646621 71646621 C A XKR9 Missense_Mutation p.L362I 0.14 tolerated(0.12) benign(0.021) TCGA-FU-A3HZ-01 8 72123465 72123465 T G EYA1 Missense_Mutation p.I542L 0.38 tolerated(0.08) benign(0.104) TCGA-FU-A3HZ-01 8 74464260 74464260 A G STAU2 Missense_Mutation p.I506T 0.38 deleterious(0.01) possibly_damaging(0.864) TCGA-FU-A3HZ-01 8 75277933 75277933 A C GDAP1 3'UTR 0.38 TCGA-FU-A3HZ-01 8 77777055 77777055 C A ZFHX4 3'UTR 0.58 TCGA-FU-A3HZ-01 8 77777964 77777964 T G ZFHX4 3'UTR 0.42 TCGA-FU-A3HZ-01 8 79514498 79514498 T G PKIA 3'UTR 0.07 TCGA-FU-A3HZ-01 8 82395402 82395402 T C FABP4 Translation_Start_Site p.M1? 0.62 deleterious(0.01) probably_damaging(0.947) TCGA-FU-A3HZ-01 8 8642946 8642946 A C MFHAS1 3'UTR 0.27 TCGA-FU-A3HZ-01 8 87588014 87588014 C A CNGB3 3'UTR 0.32 TCGA-FU-A3HZ-01 8 89180150 89180150 G A MMP16 Missense_Mutation p.R153C 0.55 deleterious(0) probably_damaging(0.991) TCGA-FU-A3HZ-01 8 92008002 92008002 G T TMEM55A Missense_Mutation p.S226Y 0.52 deleterious(0.02) possibly_damaging(0.609) TCGA-FU-A3HZ-01 8 92213000 92213000 C T LRRC69 Nonsense_Mutation p.R305* 0.35 TCGA-FU-A3HZ-01 8 92374634 92374634 A G SLC26A7 Silent p.G456G 0.43 TCGA-FU-A3HZ-01 8 92409990 92409990 G T SLC26A7 3'Flank 0.29 TCGA-FU-A3HZ-01 8 94936678 94936678 G T PDP1 3'UTR 0.23 TCGA-FU-A3HZ-01 8 95658444 95658444 G T ESRP1 Nonsense_Mutation p.E142* 0.45 TCGA-FU-A3HZ-01 8 97245436 97245436 C A UQCRB Missense_Mutation p.W13C 0.19 deleterious(0.02) probably_damaging(0.926) TCGA-FU-A3HZ-01 8 97797327 97797327 G A CPQ Missense_Mutation p.A68T 0.65 tolerated(0.07) benign(0.098) TCGA-FU-A3HZ-01 9 100258201 100258201 T G TDRD7 3'UTR 0.47 TCGA-FU-A3HZ-01 9 101494867 101494867 G T ANKS6 3'UTR 0.29 TCGA-FU-A3HZ-01 9 101912441 101912441 A C TGFBR1 3'UTR 0.38 TCGA-FU-A3HZ-01 9 101912721 101912721 A C TGFBR1 3'UTR 0.33 TCGA-FU-A3HZ-01 9 102744408 102744408 A C ERP44 3'UTR 0.37 TCGA-FU-A3HZ-01 9 104123226 104123226 C A BAAT 3'UTR 0.30 TCGA-FU-A3HZ-01 9 104171026 104171026 C T ZNF189 Nonsense_Mutation p.R326* 0.32 TCGA-FU-A3HZ-01 9 104314675 104314675 G A RNF20 Missense_Mutation p.R514H 0.38 tolerated(0.07) possibly_damaging(0.522) TCGA-FU-A3HZ-01 9 104332695 104332695 C A GRIN3A 3'UTR 0.30 TCGA-FU-A3HZ-01 9 106887246 106887246 G T SMC2 Nonsense_Mutation p.E771* 0.19 TCGA-FU-A3HZ-01 9 107298510 107298510 T C OR13C3 Silent p.R195R 0.40 TCGA-FU-A3HZ-01 9 108536698 108536698 A G TMEM38B 3'UTR 0.39 TCGA-FU-A3HZ-01 9 110093035 110093035 A C RAD23B 3'UTR 0.32 TCGA-FU-A3HZ-01 9 111617835 111617835 C T ACTL7B Missense_Mutation p.V126M 0.40 tolerated(1) possibly_damaging(0.87) TCGA-FU-A3HZ-01 9 112211098 112211098 C T PTPN3 Missense_Mutation p.E136K 0.28 tolerated(0.09) possibly_damaging(0.804) TCGA-FU-A3HZ-01 9 113169315 113169315 A C SVEP1 Missense_Mutation p.I2855M 0.44 benign(0.091) TCGA-FU-A3HZ-01 9 113636816 113636816 A G LPAR1 3'UTR 0.24 TCGA-FU-A3HZ-01 9 114359674 114359674 T G PTGR1 Missense_Mutation p.K10T 0.35 tolerated(0.29) benign(0.134) TCGA-FU-A3HZ-01 9 114919845 114919845 C A SUSD1 Missense_Mutation p.R51I 0.14 tolerated(0.28) benign(0.004) TCGA-FU-A3HZ-01 9 115652152 115652152 A G SLC46A2 Silent p.P270P 0.18 TCGA-FU-A3HZ-01 9 115804888 115804888 C A ZFP37 3'UTR 0.33 TCGA-FU-A3HZ-01 9 116026719 116026719 T C SLC31A1 3'UTR 0.55 TCGA-FU-A3HZ-01 9 116175787 116175787 A C C9orf43 Missense_Mutation p.D5A 0.43 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 9 117120224 117120224 G A AKNA Nonsense_Mutation p.R906* 0.47 TCGA-FU-A3HZ-01 9 117791732 117791732 A G TNC Missense_Mutation p.F2026L 0.29 deleterious(0) probably_damaging(0.997) TCGA-FU-A3HZ-01 9 118997560 118997560 C T PAPPA Silent p.V792V 0.49 TCGA-FU-A3HZ-01 9 119161919 119161919 T C PAPPA-AS1 5'UTR 0.44 TCGA-FU-A3HZ-01 9 119163645 119163645 G T PAPPA 3'UTR 0.23 TCGA-FU-A3HZ-01 9 120476131 120476131 T C TLR4 Silent p.N575N 0.38 TCGA-FU-A3HZ-01 9 123216113 123216113 C T CDK5RAP2 Missense_Mutation p.G805E 0.25 tolerated(1) benign(0.008) TCGA-FU-A3HZ-01 9 123942009 123942009 T C RAB14 3'UTR 0.41 TCGA-FU-A3HZ-01 9 125621235 125621235 G A RC3H2 Nonsense_Mutation p.R666* 0.17 TCGA-FU-A3HZ-01 9 125796960 125796960 A C GPR21 Missense_Mutation p.T39P 0.14 deleterious(0.01) possibly_damaging(0.866) TCGA-FU-A3HZ-01 9 126134478 126134478 G T CRB2 Missense_Mutation p.G820V 0.27 deleterious(0) probably_damaging(0.988) TCGA-FU-A3HZ-01 9 127287012 127287012 G A NR6A1 Nonsense_Mutation p.R448* 0.59 TCGA-FU-A3HZ-01 9 127734084 127734084 T C SCAI Missense_Mutation p.N503S 0.36 deleterious(0.03) benign(0.003) TCGA-FU-A3HZ-01 9 128678194 128678194 G T PBX3 Missense_Mutation p.E168D 0.41 deleterious(0.02) possibly_damaging(0.819) TCGA-FU-A3HZ-01 9 128724393 128724393 C A PBX3 Missense_Mutation p.S341Y 0.22 tolerated(0.09) probably_damaging(0.99) TCGA-FU-A3HZ-01 9 128728669 128728669 A C PBX3 3'UTR 0.25 TCGA-FU-A3HZ-01 9 129453255 129453255 T G LMX1B Missense_Mutation p.F156C 0.50 tolerated(0.13) probably_damaging(1) TCGA-FU-A3HZ-01 9 129977105 129977105 A C RALGPS1 Missense_Mutation p.K543T 0.20 tolerated(0.17) benign(0.436) TCGA-FU-A3HZ-01 9 131038431 131038431 C T SWI5 Missense_Mutation p.R3W 0.30 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-FU-A3HZ-01 9 131255085 131255085 G A ODF2 Splice_Site p.X584_splice 0.33 TCGA-FU-A3HZ-01 9 131680154 131680154 T C LRRC8A 3'UTR 0.32 TCGA-FU-A3HZ-01 9 133270717 133270717 G T AL354898.1 5'Flank 0.53 TCGA-FU-A3HZ-01 9 133729510 133729510 C T ABL1 Missense_Mutation p.R66C 0.42 deleterious(0) probably_damaging(0.99) TCGA-FU-A3HZ-01 9 133911651 133911651 G A LAMC3 Missense_Mutation p.R303H 0.28 tolerated(0.07) benign(0.224) TCGA-FU-A3HZ-01 9 135553957 135553957 T C GTF3C4 Silent p.F317F 0.23 TCGA-FU-A3HZ-01 9 135698659 135698659 G A AK8 Silent p.L274L 0.36 TCGA-FU-A3HZ-01 9 136208531 136208531 C T MED22 Missense_Mutation p.E143K 0.31 deleterious_low_confidence(0.03) benign(0.114) TCGA-FU-A3HZ-01 9 136555521 136555521 T G SARDH Missense_Mutation p.S684R 0.32 deleterious(0) probably_damaging(0.987) TCGA-FU-A3HZ-01 9 136641167 136641167 G T VAV2 Missense_Mutation p.D667E 0.30 tolerated(0.05) benign(0.121) TCGA-FU-A3HZ-01 9 137801577 137801577 C T FCN1 3'UTR 0.45 TCGA-FU-A3HZ-01 9 138657518 138657518 C T KCNT1 Missense_Mutation p.R417C 0.19 deleterious(0) probably_damaging(0.982) TCGA-FU-A3HZ-01 9 138774900 138774900 T G CAMSAP1 Missense_Mutation p.D62A 0.18 deleterious(0) benign(0.209) TCGA-FU-A3HZ-01 9 139290190 139290190 G A SNAPC4 Silent p.D70D 0.42 TCGA-FU-A3HZ-01 9 140972693 140972693 T G CACNA1B Missense_Mutation p.F1693V 0.40 deleterious(0) possibly_damaging(0.681) TCGA-FU-A3HZ-01 9 141070325 141070325 C T TUBBP5 Intron 0.33 TCGA-FU-A3HZ-01 9 16416324 16416324 C A BNC2 3'UTR 0.29 TCGA-FU-A3HZ-01 9 16552656 16552656 C T BNC2 Missense_Mutation p.A181T 0.38 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 9 177808 177808 A C CBWD1 Intron 0.23 TCGA-FU-A3HZ-01 9 17797091 17797091 G A SH3GL2 3'UTR 0.18 TCGA-FU-A3HZ-01 9 18574115 18574115 C T ADAMTSL1 Missense_Mutation p.L109F 0.40 deleterious(0) probably_damaging(0.992) TCGA-FU-A3HZ-01 9 18622252 18622252 C T ADAMTSL1 Silent p.C162C 0.37 TCGA-FU-A3HZ-01 9 19086756 19086756 A G HAUS6 Silent p.S225S 0.10 TCGA-FU-A3HZ-01 9 19096727 19096727 T G HAUS6 Missense_Mutation p.I57L 0.19 deleterious(0.03) benign(0.001) TCGA-FU-A3HZ-01 9 19316628 19316628 A C DENND4C Missense_Mutation p.K533T 0.38 tolerated(0.31) benign(0.03) TCGA-FU-A3HZ-01 9 19378854 19378854 G T RPS6 Silent p.V67V 0.36 TCGA-FU-A3HZ-01 9 20740313 20740313 G T FOCAD Missense_Mutation p.K122N 0.17 tolerated(0.34) benign(0.015) TCGA-FU-A3HZ-01 9 21350317 21350317 T G IFNA6 Nonstop_Mutation p.*190Yext*11 0.35 TCGA-FU-A3HZ-01 9 23701536 23701536 C T ELAVL2 Missense_Mutation p.G185D 0.32 tolerated(0.37) benign(0.01) TCGA-FU-A3HZ-01 9 27183515 27183515 T G TEK Missense_Mutation p.S363R 0.31 tolerated(0.14) possibly_damaging(0.765) TCGA-FU-A3HZ-01 9 27949151 27949151 G A LINGO2 Missense_Mutation p.R507C 0.25 tolerated(0.05) possibly_damaging(0.513) TCGA-FU-A3HZ-01 9 2830977 2830977 T C KIAA0020 Missense_Mutation p.K221R 0.50 tolerated(0.05) possibly_damaging(0.486) TCGA-FU-A3HZ-01 9 32630671 32630671 T C TAF1L Missense_Mutation p.D1636G 0.24 tolerated(0.09) probably_damaging(0.999) TCGA-FU-A3HZ-01 9 32633243 32633243 T G TAF1L Missense_Mutation p.T779P 0.48 deleterious(0) possibly_damaging(0.857) TCGA-FU-A3HZ-01 9 32634562 32634562 T G TAF1L Missense_Mutation p.K339T 0.06 tolerated(0.12) benign(0.275) TCGA-FU-A3HZ-01 9 32786422 32786422 C A TMEM215 3'UTR 0.60 TCGA-FU-A3HZ-01 9 33469506 33469506 G A NOL6 Missense_Mutation p.R240W 0.23 tolerated(0.06) probably_damaging(0.978) TCGA-FU-A3HZ-01 9 33550477 33550477 T G ANKRD18B Missense_Mutation p.F644C 0.29 tolerated(0.18) possibly_damaging(0.721) TCGA-FU-A3HZ-01 9 33674910 33674910 T G PTENP1 RNA 0.33 TCGA-FU-A3HZ-01 9 33676404 33676404 A C PTENP1 RNA 0.28 TCGA-FU-A3HZ-01 9 34257873 34257873 A G KIF24 Silent p.L578L 0.24 TCGA-FU-A3HZ-01 9 34726806 34726806 G A FAM205A Missense_Mutation p.T144M 0.25 tolerated(0.62) benign(0.006) TCGA-FU-A3HZ-01 9 35043198 35043199 - A C9orf131 Frame_Shift_Ins p.S193Kfs*46 0.26 TCGA-FU-A3HZ-01 9 35089413 35089413 C T PIGO Missense_Mutation p.R1035H 0.38 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 9 35685532 35685532 C T TPM2 Missense_Mutation p.E131K 0.48 deleterious(0.01) probably_damaging(0.997) TCGA-FU-A3HZ-01 9 414881 414881 A C DOCK8 Missense_Mutation p.K1210N 0.40 deleterious(0) possibly_damaging(0.753) TCGA-FU-A3HZ-01 9 43815872 43815872 C A CNTNAP3B Missense_Mutation p.S209Y 0.31 deleterious(0) probably_damaging(0.974) TCGA-FU-A3HZ-01 9 4576646 4576646 T G SLC1A1 Nonsense_Mutation p.L359* 0.14 TCGA-FU-A3HZ-01 9 465199 465199 T G DOCK8 3'UTR 0.56 TCGA-FU-A3HZ-01 9 5050791 5050791 G T JAK2 Nonsense_Mutation p.E192* 0.32 TCGA-FU-A3HZ-01 9 5090886 5090886 G T JAK2 Nonsense_Mutation p.E1012* 0.22 TCGA-FU-A3HZ-01 9 5358172 5358172 A C PLGRKT 3'UTR 0.12 TCGA-FU-A3HZ-01 9 5466819 5466819 G T CD274 Missense_Mutation p.K280N 0.19 deleterious(0.02) possibly_damaging(0.575) TCGA-FU-A3HZ-01 9 5549468 5549468 C A PDCD1LG2 Missense_Mutation p.S165R 0.12 deleterious(0) probably_damaging(0.942) TCGA-FU-A3HZ-01 9 5765691 5765691 C A KIAA1432 Missense_Mutation p.F1010L 0.42 tolerated(0.18) possibly_damaging(0.625) TCGA-FU-A3HZ-01 9 5921108 5921108 T G KIAA2026 Missense_Mutation p.N1630H 0.19 deleterious(0.04) possibly_damaging(0.563) TCGA-FU-A3HZ-01 9 6012865 6012865 G A RANBP6 Missense_Mutation p.R915W 0.48 deleterious(0) benign(0.142) TCGA-FU-A3HZ-01 9 6013473 6013473 A G RANBP6 Missense_Mutation p.V712A 0.17 deleterious(0.02) benign(0.077) TCGA-FU-A3HZ-01 9 69200179 69200179 C T FOXD4L6 3'UTR 0.36 TCGA-FU-A3HZ-01 9 70999424 70999424 G T PGM5 Nonsense_Mutation p.E179* 0.43 TCGA-FU-A3HZ-01 9 71155719 71155719 T G TMEM252 Missense_Mutation p.R4S 0.36 tolerated(0.07) possibly_damaging(0.744) TCGA-FU-A3HZ-01 9 71396324 71396324 A C FAM122A 3'UTR 0.15 TCGA-FU-A3HZ-01 9 71867734 71867734 G A TJP2 Missense_Mutation p.E1140K 0.38 deleterious(0) probably_damaging(0.959) TCGA-FU-A3HZ-01 9 72785288 72785288 C T MAMDC2 Intron 0.44 TCGA-FU-A3HZ-01 9 73461494 73461494 G T TRPM3 Missense_Mutation p.S159Y 0.32 deleterious(0) possibly_damaging(0.865) TCGA-FU-A3HZ-01 9 77365604 77365604 C T TRPM6 Missense_Mutation p.S1678N 0.27 tolerated(0.2) benign(0.003) TCGA-FU-A3HZ-01 9 78505601 78505601 C T PCSK5 5'UTR 0.41 TCGA-FU-A3HZ-01 9 78953342 78953342 C A PCSK5 Missense_Mutation p.P1622T 0.50 tolerated(0.09) benign(0.147) TCGA-FU-A3HZ-01 9 79875040 79875040 G A VPS13A Missense_Mutation p.R776Q 0.54 tolerated(0.45) benign(0.009) TCGA-FU-A3HZ-01 9 79999526 79999526 T G VPS13A Intron 0.36 TCGA-FU-A3HZ-01 9 8317258 8317258 A C PTPRD 3'UTR 0.36 TCGA-FU-A3HZ-01 9 8389318 8389318 C T PTPRD Missense_Mutation p.E1434K 0.40 deleterious(0) probably_damaging(0.995) TCGA-FU-A3HZ-01 9 84564737 84564737 T G RP11-383M4.6 Intron 0.38 TCGA-FU-A3HZ-01 9 84609736 84609736 G A SPATA31D1 Missense_Mutation p.A1451T 0.37 tolerated(0.27) benign(0.301) TCGA-FU-A3HZ-01 9 86421446 86421446 C A GKAP1 5'UTR 0.32 TCGA-FU-A3HZ-01 9 86583574 86583574 A C HNRNPK 3'UTR 0.50 TCGA-FU-A3HZ-01 9 88934520 88934520 A C ZCCHC6 Missense_Mutation p.F1032V 0.09 deleterious(0.04) possibly_damaging(0.689) TCGA-FU-A3HZ-01 9 94172976 94172976 G A NFIL3 Missense_Mutation p.A14V 0.36 tolerated(0.28) benign(0.018) TCGA-FU-A3HZ-01 9 95609789 95609789 A C ZNF484 Missense_Mutation p.F429C 0.17 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 9 98205979 98205979 A C PTCH1 3'UTR 0.33 TCGA-FU-A3HZ-01 X 100081724 100081724 C T CSTF2 Silent p.G268G 0.47 TCGA-FU-A3HZ-01 X 100105261 100105261 G A NOX1 Missense_Mutation p.H338Y 0.57 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 X 100276201 100276201 C A TRMT2B Missense_Mutation p.D319Y 0.40 deleterious(0.01) possibly_damaging(0.49) TCGA-FU-A3HZ-01 X 100297126 100297126 A C TRMT2B Missense_Mutation p.D51E 0.38 tolerated(0.13) benign(0.004) TCGA-FU-A3HZ-01 X 100510235 100510235 G T DRP2 Missense_Mutation p.S748I 0.36 deleterious(0) benign(0.218) TCGA-FU-A3HZ-01 X 100743067 100743067 A G ARMCX4 5'UTR 0.37 TCGA-FU-A3HZ-01 X 100911003 100911003 G T ARMCX2 Silent p.I524I 0.35 TCGA-FU-A3HZ-01 X 100912263 100912263 G A ARMCX2 Silent p.S104S 0.40 TCGA-FU-A3HZ-01 X 101911364 101911364 C A GPRASP1 Silent p.V841V 0.24 TCGA-FU-A3HZ-01 X 102587118 102587118 G T TCEAL7 3'UTR 0.48 TCGA-FU-A3HZ-01 X 102611395 102611395 C T WBP5 5'UTR 0.50 TCGA-FU-A3HZ-01 X 102864443 102864443 G T TCEAL3 Nonsense_Mutation p.E151* 0.23 TCGA-FU-A3HZ-01 X 103359951 103359951 A C ZCCHC18 Silent p.T383T 0.29 TCGA-FU-A3HZ-01 X 105011023 105011023 A G IL1RAPL2 Missense_Mutation p.D477G 0.42 tolerated(0.09) benign(0.034) TCGA-FU-A3HZ-01 X 105280684 105280684 T C SERPINA7 Silent p.P122P 0.45 TCGA-FU-A3HZ-01 X 105280795 105280795 G A SERPINA7 Silent p.C85C 0.27 TCGA-FU-A3HZ-01 X 105449951 105449951 G A MUM1L1 Missense_Mutation p.D176N 0.28 tolerated(0.66) benign(0.001) TCGA-FU-A3HZ-01 X 105451316 105451316 G T MUM1L1 Missense_Mutation p.D631Y 0.28 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 X 106066571 106066571 T G TBC1D8B Missense_Mutation p.F234L 0.39 tolerated(0.1) benign(0.224) TCGA-FU-A3HZ-01 X 106070569 106070569 T G TBC1D8B Splice_Site p.X401_splice 0.18 TCGA-FU-A3HZ-01 X 106186381 106186381 C A MORC4 Missense_Mutation p.Q580H 0.37 tolerated(0.06) benign(0.008) TCGA-FU-A3HZ-01 X 106199763 106199763 C A MORC4 Nonsense_Mutation p.E486* 0.27 TCGA-FU-A3HZ-01 X 106486435 106486435 T C PIH1D3 Silent p.C184C 0.20 TCGA-FU-A3HZ-01 X 106840934 106840934 A C FRMPD3 Missense_Mutation p.N642H 0.47 tolerated_low_confidence(0.51) benign(0.004) TCGA-FU-A3HZ-01 X 106957745 106957745 C T TSC22D3 3'UTR 0.59 TCGA-FU-A3HZ-01 X 107330968 107330968 G T PSMD10 Missense_Mutation p.L159M 0.41 deleterious(0.02) probably_damaging(0.941) TCGA-FU-A3HZ-01 X 107431200 107431200 G T COL4A6 Missense_Mutation p.L550I 0.29 possibly_damaging(0.7) TCGA-FU-A3HZ-01 X 108652353 108652353 G T GUCY2F Missense_Mutation p.F612L 0.36 tolerated(0.5) probably_damaging(0.992) TCGA-FU-A3HZ-01 X 108787343 108787343 T G NXT2 3'UTR 0.43 TCGA-FU-A3HZ-01 X 108904801 108904801 C A ACSL4 Missense_Mutation p.K593N 0.48 deleterious(0.05) probably_damaging(0.999) TCGA-FU-A3HZ-01 X 109696047 109696047 G A RGAG1 Silent p.S734S 0.34 TCGA-FU-A3HZ-01 X 109699389 109699389 A C RGAG1 3'UTR 0.18 TCGA-FU-A3HZ-01 X 110488363 110488363 T G CAPN6 3'UTR 0.17 TCGA-FU-A3HZ-01 X 110488906 110488906 C A CAPN6 3'UTR 0.23 TCGA-FU-A3HZ-01 X 11204524 11204524 C T ARHGAP6 Missense_Mutation p.D369N 0.52 deleterious(0) possibly_damaging(0.885) TCGA-FU-A3HZ-01 X 114143380 114143380 T C HTR2C 3'UTR 0.35 TCGA-FU-A3HZ-01 X 114357695 114357695 C A LRCH2 Missense_Mutation p.R637I 0.38 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 X 114391210 114391210 G T LRCH2 Missense_Mutation p.S495Y 0.28 deleterious(0.03) benign(0.006) TCGA-FU-A3HZ-01 X 114425384 114425384 C T RBMXL3 Silent p.S460S 0.08 TCGA-FU-A3HZ-01 X 115304016 115304016 T A AGTR2 Silent p.S161S 0.09 TCGA-FU-A3HZ-01 X 115590812 115590812 T G SLC6A14 3'UTR 0.33 TCGA-FU-A3HZ-01 X 115593002 115593002 T G CT83 Missense_Mutation p.N83T 0.14 deleterious(0.01) possibly_damaging(0.538) TCGA-FU-A3HZ-01 X 117583809 117583809 T G WDR44 3'UTR 0.28 TCGA-FU-A3HZ-01 X 117809942 117809942 A C DOCK11 Missense_Mutation p.K1748T 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-FU-A3HZ-01 X 118227698 118227698 G T KIAA1210 Missense_Mutation p.S472Y 0.37 deleterious(0) probably_damaging(0.994) TCGA-FU-A3HZ-01 X 118718086 118718086 C A UBE2A 3'UTR 0.43 TCGA-FU-A3HZ-01 X 118722895 118722895 G T NKRF 3'UTR 0.22 TCGA-FU-A3HZ-01 X 118975126 118975126 C A UPF3B Missense_Mutation p.E240D 0.35 tolerated(0.1) possibly_damaging(0.815) TCGA-FU-A3HZ-01 X 119570367 119570367 G T LAMP2 Intron 0.29 TCGA-FU-A3HZ-01 X 119760958 119760958 T C C1GALT1C1 Missense_Mutation p.I22V 0.35 tolerated(0.63) benign(0.007) TCGA-FU-A3HZ-01 X 120182121 120182121 G A GLUD2 Missense_Mutation p.E195K 0.43 tolerated(0.53) benign(0.027) TCGA-FU-A3HZ-01 X 120183741 120183741 C A GLUD2 3'UTR 0.41 TCGA-FU-A3HZ-01 X 122318312 122318312 C A GRIA3 5'UTR 0.31 TCGA-FU-A3HZ-01 X 123025119 123025119 G T XIAP Nonsense_Mutation p.E337* 0.35 TCGA-FU-A3HZ-01 X 123191805 123191805 T G STAG2 Missense_Mutation p.V465G 0.06 deleterious(0) probably_damaging(0.984) TCGA-FU-A3HZ-01 X 123229269 123229269 C A STAG2 Missense_Mutation p.F1251L 0.47 deleterious_low_confidence(0.01) benign(0.253) TCGA-FU-A3HZ-01 X 123512133 123512133 T A TENM1 3'UTR 0.50 TCGA-FU-A3HZ-01 X 123556133 123556133 T G TENM1 Missense_Mutation p.D1487A 0.42 deleterious(0.01) benign(0.297) TCGA-FU-A3HZ-01 X 123787498 123787498 G T TENM1 Missense_Mutation p.S435Y 0.36 deleterious(0) probably_damaging(0.928) TCGA-FU-A3HZ-01 X 125298619 125298619 G A DCAF12L2 Missense_Mutation p.A430V 0.35 deleterious(0) benign(0.082) TCGA-FU-A3HZ-01 X 12842266 12842266 G T PRPS2 3'Flank 0.43 TCGA-FU-A3HZ-01 X 128581251 128581251 C A SMARCA1 3'UTR 0.43 TCGA-FU-A3HZ-01 X 128710357 128710357 C T OCRL Missense_Mutation p.S648L 0.50 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 X 128885764 128885764 C A XPNPEP2 Missense_Mutation p.F261L 0.08 tolerated(0.14) benign(0.036) TCGA-FU-A3HZ-01 X 129200915 129200915 C T ELF4 Silent p.P591P 0.35 TCGA-FU-A3HZ-01 X 12937616 12937616 C A TLR8 Missense_Mutation p.L153I 0.23 deleterious(0) possibly_damaging(0.903) TCGA-FU-A3HZ-01 X 12939888 12939888 A C TLR8 Missense_Mutation p.D910A 0.30 tolerated(0.27) possibly_damaging(0.685) TCGA-FU-A3HZ-01 X 129630139 129630139 G A RP1-274L7.1 Intron 0.29 TCGA-FU-A3HZ-01 X 131202297 131202297 T G MST4 Missense_Mutation p.L129V 0.18 deleterious(0.01) possibly_damaging(0.701) TCGA-FU-A3HZ-01 X 131337760 131337760 T G RAP2C 3'UTR 0.21 TCGA-FU-A3HZ-01 X 131513231 131513231 G T MBNL3 3'UTR 0.33 TCGA-FU-A3HZ-01 X 131842589 131842589 A C HS6ST2 Intron 0.60 TCGA-FU-A3HZ-01 X 132161383 132161383 A G USP26 Missense_Mutation p.F289S 0.12 deleterious(0.04) benign(0.152) TCGA-FU-A3HZ-01 X 132162294 132162294 C A USP26 5'UTR 0.08 TCGA-FU-A3HZ-01 X 13337013 13337013 C A ATXN3L Missense_Mutation p.K347N 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-FU-A3HZ-01 X 133379429 133379429 A G CCDC160 Missense_Mutation p.D200G 0.18 deleterious(0.01) possibly_damaging(0.728) TCGA-FU-A3HZ-01 X 133511628 133511628 C A PHF6 5'UTR 0.21 TCGA-FU-A3HZ-01 X 134493904 134493904 T G ZNF449 Missense_Mutation p.M216R 0.40 tolerated(0.24) benign(0.053) TCGA-FU-A3HZ-01 X 134991912 134991912 T C SAGE1 Missense_Mutation p.I566T 0.22 tolerated(0.07) benign(0.225) TCGA-FU-A3HZ-01 X 134994537 134994537 G T SAGE1 Missense_Mutation p.R860I 0.12 deleterious(0.03) possibly_damaging(0.693) TCGA-FU-A3HZ-01 X 135106607 135106607 T C SLC9A6 Silent p.G527G 0.08 TCGA-FU-A3HZ-01 X 135279064 135279064 C A FHL1 Intron 0.34 TCGA-FU-A3HZ-01 X 135292227 135292227 G A FHL1 3'UTR 0.07 TCGA-FU-A3HZ-01 X 135323432 135323432 T G MAP7D3 Missense_Mutation p.K141T 0.39 deleterious(0) possibly_damaging(0.889) TCGA-FU-A3HZ-01 X 135405383 135405383 A C GPR112 Missense_Mutation p.S173R 0.21 tolerated(0.22) benign(0.265) TCGA-FU-A3HZ-01 X 135435503 135435503 C A GPR112 Missense_Mutation p.S2277Y 0.47 tolerated(0.21) benign(0.003) TCGA-FU-A3HZ-01 X 135741263 135741263 A G CD40LG Missense_Mutation p.K159E 0.19 deleterious(0) benign(0.361) TCGA-FU-A3HZ-01 X 138808741 138808741 A C ATP11C 3'UTR 0.31 TCGA-FU-A3HZ-01 X 139585462 139585462 T G SOX3 3'UTR 0.46 TCGA-FU-A3HZ-01 X 140993495 140993495 C A MAGEC1 Missense_Mutation p.S102Y 0.28 deleterious_low_confidence(0) benign(0.002) TCGA-FU-A3HZ-01 X 140994167 140994167 C T MAGEC1 Missense_Mutation p.T326I 0.25 deleterious_low_confidence(0.03) benign(0.001) TCGA-FU-A3HZ-01 X 141290602 141290602 G A MAGEC2 3'UTR 0.57 TCGA-FU-A3HZ-01 X 142718310 142718310 G A SLITRK4 Silent p.V205V 0.45 TCGA-FU-A3HZ-01 X 142718888 142718888 T C SLITRK4 Missense_Mutation p.I13V 0.16 tolerated(0.74) benign(0) TCGA-FU-A3HZ-01 X 145078734 145078734 G T MIR892B RNA 0.44 TCGA-FU-A3HZ-01 X 147743667 147743667 C A AFF2 Missense_Mutation p.S140Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-FU-A3HZ-01 X 148577936 148577936 C T IDS Missense_Mutation p.E63K 0.40 deleterious(0.01) possibly_damaging(0.457) TCGA-FU-A3HZ-01 X 149102009 149102009 A G CXorf40B Silent p.R28R 0.40 TCGA-FU-A3HZ-01 X 149767133 149767133 T G MTM1 Missense_Mutation p.L72V 0.33 deleterious(0) benign(0.345) TCGA-FU-A3HZ-01 X 150770025 150770025 A C PASD1 5'UTR 0.38 TCGA-FU-A3HZ-01 X 150912703 150912703 G T CNGA2 Missense_Mutation p.E576D 0.30 tolerated(0.15) benign(0.022) TCGA-FU-A3HZ-01 X 152958800 152958800 G A SLC6A8 Missense_Mutation p.R332H 0.08 deleterious(0.05) benign(0.041) TCGA-FU-A3HZ-01 X 152959018 152959018 A C SLC6A8 Missense_Mutation p.H373P 0.14 tolerated(1) benign(0.004) TCGA-FU-A3HZ-01 X 153040415 153040415 G A PLXNB3 Missense_Mutation p.E1361K 0.53 deleterious(0) possibly_damaging(0.618) TCGA-FU-A3HZ-01 X 153137669 153137669 C T L1CAM Missense_Mutation p.R113H 0.47 deleterious(0.01) probably_damaging(1) TCGA-FU-A3HZ-01 X 153288705 153288705 A G IRAK1 5'Flank 0.32 TCGA-FU-A3HZ-01 X 15349650 15349650 C T PIGA Missense_Mutation p.A135T 0.47 deleterious(0.03) possibly_damaging(0.718) TCGA-FU-A3HZ-01 X 153533432 153533432 C T TKTL1 Intron 0.47 TCGA-FU-A3HZ-01 X 153580009 153580009 G A FLNA Silent p.F2321F 0.31 TCGA-FU-A3HZ-01 X 153678638 153678638 G A FAM50A Missense_Mutation p.D328N 0.34 deleterious(0.05) possibly_damaging(0.665) TCGA-FU-A3HZ-01 X 154156997 154156997 C A F8 Nonsense_Mutation p.E1690* 0.41 TCGA-FU-A3HZ-01 X 154490247 154490247 C A RAB39B Missense_Mutation p.E161D 0.33 tolerated(0.41) probably_damaging(0.992) TCGA-FU-A3HZ-01 X 155008148 155008148 C T SPRY3 3'UTR 0.50 TCGA-FU-A3HZ-01 X 1584687 1584687 G A P2RY8 Silent p.F255F 0.30 TCGA-FU-A3HZ-01 X 16142145 16142145 T G GRPR Missense_Mutation p.S23R 0.37 tolerated(0.42) benign(0.001) TCGA-FU-A3HZ-01 X 16170617 16170617 C T GRPR Missense_Mutation p.T335I 0.44 deleterious(0.04) benign(0.045) TCGA-FU-A3HZ-01 X 17744656 17744656 G T NHS Missense_Mutation p.E789D 0.20 tolerated(0.41) benign(0.044) TCGA-FU-A3HZ-01 X 17818545 17818545 C A RAI2 Missense_Mutation p.R529I 0.33 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 X 17818979 17818979 A C RAI2 Missense_Mutation p.I384M 0.44 tolerated(0.36) unknown(0) TCGA-FU-A3HZ-01 X 18949833 18949833 C A PHKA2 Missense_Mutation p.D391Y 0.37 deleterious(0) probably_damaging(0.967) TCGA-FU-A3HZ-01 X 19017237 19017237 C A GPR64 Missense_Mutation p.D831Y 0.38 deleterious(0) probably_damaging(0.992) TCGA-FU-A3HZ-01 X 19418734 19418734 G A MAP3K15 Missense_Mutation p.T631M 0.53 deleterious(0.04) possibly_damaging(0.587) TCGA-FU-A3HZ-01 X 20034338 20034338 C A MAP7D2 Missense_Mutation p.K506N 0.37 tolerated(0.1) unknown(0) TCGA-FU-A3HZ-01 X 20173059 20173059 A C RPS6KA3 3'UTR 0.33 TCGA-FU-A3HZ-01 X 21613112 21613112 C A CNKSR2 Missense_Mutation p.F617L 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-FU-A3HZ-01 X 22291431 22291431 G A ZNF645 Missense_Mutation p.R108Q 0.43 tolerated(0.18) benign(0.021) TCGA-FU-A3HZ-01 X 25013932 25013932 G T POLA1 Missense_Mutation p.K1418N 0.25 tolerated(0.11) benign(0.016) TCGA-FU-A3HZ-01 X 2732496 2732496 T G XG 3'UTR 0.41 TCGA-FU-A3HZ-01 X 27766685 27766685 A C DCAF8L2 Missense_Mutation p.K558T 0.29 tolerated(0.06) possibly_damaging(0.876) TCGA-FU-A3HZ-01 X 29301120 29301120 C T IL1RAPL1 Nonsense_Mutation p.R50* 0.34 TCGA-FU-A3HZ-01 X 30846242 30846242 G T TAB3 3'UTR 0.48 TCGA-FU-A3HZ-01 X 30848320 30848320 A C TAB3 3'UTR 0.25 TCGA-FU-A3HZ-01 X 31196837 31196837 C T DMD Missense_Mutation p.R3391Q 0.36 benign(0.417) TCGA-FU-A3HZ-01 X 31496411 31496411 T G DMD Missense_Mutation p.K2917Q 0.31 possibly_damaging(0.607) TCGA-FU-A3HZ-01 X 31525481 31525481 G A DMD Silent p.S2769S 0.33 TCGA-FU-A3HZ-01 X 31950329 31950329 C A DMD Missense_Mutation p.K2210N 0.28 possibly_damaging(0.607) TCGA-FU-A3HZ-01 X 34646474 34646474 T G TMEM47 3'UTR 0.42 TCGA-FU-A3HZ-01 X 36090079 36090079 T G CHDC2 Missense_Mutation p.L61V 0.09 deleterious(0.01) benign(0.176) TCGA-FU-A3HZ-01 X 36117987 36117987 G T CHDC2 Missense_Mutation p.Q281H 0.14 deleterious(0) possibly_damaging(0.8) TCGA-FU-A3HZ-01 X 36366394 36366394 A C CXorf30 Missense_Mutation p.K311T 0.17 deleterious(0.04) benign(0.066) TCGA-FU-A3HZ-01 X 36379467 36379467 C T CXorf30 Silent p.F404F 0.38 TCGA-FU-A3HZ-01 X 38156574 38156574 G C RPGR Silent p.V459V 0.19 TCGA-FU-A3HZ-01 X 38211946 38211946 G T OTC 5'UTR 0.38 TCGA-FU-A3HZ-01 X 38548124 38548124 T G TSPAN7 3'UTR 0.56 TCGA-FU-A3HZ-01 X 38664168 38664168 C A MID1IP1 5'UTR 0.50 TCGA-FU-A3HZ-01 X 38665744 38665744 C T MID1IP1 3'UTR 0.39 TCGA-FU-A3HZ-01 X 39913549 39913549 G A BCOR Silent p.D1593D 0.50 TCGA-FU-A3HZ-01 X 40464971 40464971 T G ATP6AP2 Missense_Mutation p.I339M 0.30 deleterious(0) probably_damaging(0.978) TCGA-FU-A3HZ-01 X 40518558 40518558 G A MED14 Missense_Mutation p.T1298M 0.50 deleterious(0) possibly_damaging(0.904) TCGA-FU-A3HZ-01 X 40539379 40539379 A G MED14 Missense_Mutation p.F873L 0.35 tolerated(0.61) benign(0.009) TCGA-FU-A3HZ-01 X 41055534 41055534 C A USP9X Missense_Mutation p.F1336L 0.41 tolerated(0.59) probably_damaging(0.914) TCGA-FU-A3HZ-01 X 41092766 41092766 C A USP9X 3'UTR 0.44 TCGA-FU-A3HZ-01 X 41555200 41555200 T G GPR34 Missense_Mutation p.F105C 0.36 deleterious(0.02) probably_damaging(0.976) TCGA-FU-A3HZ-01 X 46466593 46466593 C T SLC9A7 Missense_Mutation p.E658K 0.40 deleterious(0.02) benign(0.075) TCGA-FU-A3HZ-01 X 46898451 46898451 C T JADE3 Missense_Mutation p.T319M 0.54 tolerated(0.06) possibly_damaging(0.73) TCGA-FU-A3HZ-01 X 46918324 46918324 C T JADE3 Silent p.L773L 0.55 TCGA-FU-A3HZ-01 X 47271964 47271964 T C ZNF157 Silent p.C164C 0.33 TCGA-FU-A3HZ-01 X 47272521 47272521 G T ZNF157 Missense_Mutation p.R350I 0.48 deleterious(0.04) possibly_damaging(0.638) TCGA-FU-A3HZ-01 X 47307793 47307793 C A ZNF41 Missense_Mutation p.R459I 0.41 tolerated(0.26) possibly_damaging(0.717) TCGA-FU-A3HZ-01 X 47307961 47307961 T A ZNF41 Missense_Mutation p.K403I 0.30 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 X 47495704 47495704 A C ELK1 3'UTR 0.38 TCGA-FU-A3HZ-01 X 47918815 47918815 C A ZNF630 Missense_Mutation p.R339I 0.14 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 X 48046033 48046033 G A SSX5 3'UTR 0.31 TCGA-FU-A3HZ-01 X 48126452 48126452 C T SSX1 3'UTR 0.41 TCGA-FU-A3HZ-01 X 48318139 48318139 G A SLC38A5 Missense_Mutation p.R398W 0.32 deleterious(0.02) benign(0.149) TCGA-FU-A3HZ-01 X 48369723 48369723 C T PORCN Silent p.G59G 0.11 TCGA-FU-A3HZ-01 X 48371045 48371045 T G PORCN Silent p.T208T 0.29 TCGA-FU-A3HZ-01 X 48417641 48417641 T C TBC1D25 Silent p.F204F 0.43 TCGA-FU-A3HZ-01 X 48433595 48433595 C T RBM3 Silent p.F9F 0.38 TCGA-FU-A3HZ-01 X 48649666 48649666 G A GATA1 Silent p.P50P 0.38 TCGA-FU-A3HZ-01 X 48841726 48841726 G A GRIPAP1 Silent p.Y377Y 0.46 TCGA-FU-A3HZ-01 X 48841800 48841800 T G GRIPAP1 Missense_Mutation p.T353P 0.10 probably_damaging(0.943) TCGA-FU-A3HZ-01 X 48927360 48927360 C A CCDC120 3'UTR 0.28 TCGA-FU-A3HZ-01 X 48934313 48934313 C T WDR45 Missense_Mutation p.R112H 0.30 deleterious(0.02) benign(0.019) TCGA-FU-A3HZ-01 X 48935736 48935736 G A WDR45 Nonsense_Mutation p.R7* 0.32 TCGA-FU-A3HZ-01 X 49143081 49143081 G A PPP1R3F Silent p.E643E 0.10 TCGA-FU-A3HZ-01 X 50213188 50213188 C A DGKK RNA 0.36 TCGA-FU-A3HZ-01 X 50345650 50345650 C A SHROOM4 Nonsense_Mutation p.E1309* 0.37 TCGA-FU-A3HZ-01 X 50350419 50350419 A C SHROOM4 Silent p.L1241L 0.43 TCGA-FU-A3HZ-01 X 50376805 50376805 A G SHROOM4 Silent p.A756A 0.08 TCGA-FU-A3HZ-01 X 51233897 51233897 T G NUDT11 3'UTR 0.29 TCGA-FU-A3HZ-01 X 51486553 51486553 G A GSPT2 5'UTR 0.29 TCGA-FU-A3HZ-01 X 53221628 53221628 A C KDM5C 3'UTR 0.64 TCGA-FU-A3HZ-01 X 53247028 53247028 C T KDM5C Missense_Mutation p.E158K 0.09 deleterious(0) probably_damaging(0.999) TCGA-FU-A3HZ-01 X 53675225 53675225 T G HUWE1 Missense_Mutation p.K25T 0.49 possibly_damaging(0.889) TCGA-FU-A3HZ-01 X 53966697 53966697 G A PHF8 Missense_Mutation p.R1004C 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-FU-A3HZ-01 X 54098851 54098851 A C FAM120C 3'UTR 0.33 TCGA-FU-A3HZ-01 X 54223029 54223029 G A WNK3 3'UTR 0.24 TCGA-FU-A3HZ-01 X 54324668 54324668 T G WNK3 Missense_Mutation p.E446D 0.42 tolerated(0.09) probably_damaging(0.995) TCGA-FU-A3HZ-01 X 54471981 54471981 T A FGD1 3'UTR 0.45 TCGA-FU-A3HZ-01 X 54950191 54950191 G T TRO Missense_Mutation p.R409I 0.31 deleterious(0) unknown(0) TCGA-FU-A3HZ-01 X 55785001 55785001 A C RRAGB 3'Flank 0.51 TCGA-FU-A3HZ-01 X 55785195 55785195 T G RRAGB 3'Flank 0.42 TCGA-FU-A3HZ-01 X 57622157 57622157 A C ZXDB 3'UTR 0.43 TCGA-FU-A3HZ-01 X 62570867 62570867 C T SPIN4 5'UTR 0.33 TCGA-FU-A3HZ-01 X 63005939 63005939 G A MIR1468 RNA 0.36 TCGA-FU-A3HZ-01 X 63412951 63412951 G T AMER1 Missense_Mutation p.F72L 0.48 deleterious(0.03) benign(0.077) TCGA-FU-A3HZ-01 X 64137799 64137799 G T ZC4H2 Intron 0.47 TCGA-FU-A3HZ-01 X 64726255 64726255 C A ZC3H12B 3'UTR 0.45 TCGA-FU-A3HZ-01 X 67283722 67283722 G A OPHN1 Missense_Mutation p.P711L 0.46 deleterious(0.05) benign(0.004) TCGA-FU-A3HZ-01 X 68060599 68060599 T C EFNB1 3'UTR 0.36 TCGA-FU-A3HZ-01 X 69261075 69261075 T G AWAT2 3'UTR 0.19 TCGA-FU-A3HZ-01 X 69595079 69595079 C A KIF4A Missense_Mutation p.L602I 0.48 deleterious(0) probably_damaging(0.998) TCGA-FU-A3HZ-01 X 69649620 69649620 A C GDPD2 Intron 0.32 TCGA-FU-A3HZ-01 X 69945180 69945180 G T TEX11 Missense_Mutation p.S301Y 0.33 deleterious(0) possibly_damaging(0.663) TCGA-FU-A3HZ-01 X 70357069 70357069 C T MED12 Missense_Mutation p.R1862C 0.31 possibly_damaging(0.751) TCGA-FU-A3HZ-01 X 70473060 70473060 G T ZMYM3 Missense_Mutation p.P16T 0.48 tolerated_low_confidence(0.11) probably_damaging(0.987) TCGA-FU-A3HZ-01 X 70521007 70521007 T A NONO 3'UTR 0.31 TCGA-FU-A3HZ-01 X 70597014 70597014 A C TAF1 Missense_Mutation p.E249D 0.23 tolerated(0.24) benign(0.012) TCGA-FU-A3HZ-01 X 70784469 70784469 A C OGT Missense_Mutation p.T819P 0.38 deleterious(0.03) benign(0.123) TCGA-FU-A3HZ-01 X 70794154 70794154 A G OGT 3'UTR 0.27 TCGA-FU-A3HZ-01 X 70794679 70794679 A C OGT 3'UTR 0.47 TCGA-FU-A3HZ-01 X 70824092 70824092 C T ACRC Missense_Mutation p.S322L 0.25 unknown(0) TCGA-FU-A3HZ-01 X 71426082 71426082 T G ERCC6L Missense_Mutation p.K845N 0.29 tolerated(0.12) benign(0.209) TCGA-FU-A3HZ-01 X 71427103 71427103 C T ERCC6L Missense_Mutation p.R505Q 0.36 deleterious(0) probably_damaging(1) TCGA-FU-A3HZ-01 X 71494328 71494328 A C RPS4X Intron 0.52 TCGA-FU-A3HZ-01 X 71788729 71788729 A C HDAC8 Missense_Mutation p.V57G 0.25 deleterious(0) possibly_damaging(0.764) TCGA-FU-A3HZ-01 X 71887265 71887265 G T PHKA1 Nonsense_Mutation p.S226* 0.27 TCGA-FU-A3HZ-01 X 73962043 73962043 C A KIAA2022 Missense_Mutation p.K783N 0.39 deleterious(0.01) probably_damaging(0.95) TCGA-FU-A3HZ-01 X 73965413 73965413 C A KIAA2022 Nonsense_Mutation p.E25* 0.47 TCGA-FU-A3HZ-01 X 75004134 75004134 G T MAGEE2 Missense_Mutation p.F251L 0.28 tolerated(0.17) probably_damaging(0.987) TCGA-FU-A3HZ-01 X 75648352 75648352 G A MAGEE1 Missense_Mutation p.R10H 0.11 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-FU-A3HZ-01 X 77912321 77912321 A G ZCCHC5 3'UTR 0.43 TCGA-FU-A3HZ-01 X 79991582 79991582 A G BRWD3 Silent p.C273C 0.35 TCGA-FU-A3HZ-01 X 82763444 82763444 C A POU3F4 Missense_Mutation p.L38I 0.20 tolerated_low_confidence(0.15) benign(0.009) TCGA-FU-A3HZ-01 X 8504910 8504910 T G KAL1 Missense_Mutation p.K508T 0.22 tolerated(0.1) benign(0.128) TCGA-FU-A3HZ-01 X 85218695 85218695 C A CHM Missense_Mutation p.R226I 0.31 deleterious(0) possibly_damaging(0.658) TCGA-FU-A3HZ-01 X 86869044 86869044 A G KLHL4 Missense_Mutation p.H196R 0.53 deleterious(0) possibly_damaging(0.76) TCGA-FU-A3HZ-01 X 88009171 88009171 T G CPXCR1 Silent p.G252G 0.43 TCGA-FU-A3HZ-01 X 89177609 89177609 G A TGIF2LX Silent p.P175P 0.28 TCGA-FU-A3HZ-01 X 90690779 90690779 T C PABPC5 Missense_Mutation p.F68S 0.46 tolerated(0.12) benign(0.105) TCGA-FU-A3HZ-01 X 91133869 91133869 C T PCDH11X Missense_Mutation p.S877F 0.32 deleterious(0.01) possibly_damaging(0.528) TCGA-FU-A3HZ-01 X 91874272 91874272 C A PCDH11X 3'UTR 0.50 TCGA-FU-A3HZ-01 X 92964553 92964553 G T FAM133A Missense_Mutation p.K45N 0.35 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-FU-A3HZ-01 X 92965461 92965461 A C FAM133A 3'UTR 0.53 TCGA-FU-A3HZ-01 X 9917409 9917409 C T SHROOM2 3'UTR 0.46 TCGA-FU-A3HZ-01 X 99549725 99549725 C A PCDH19 3'UTR 0.38 TCGA-FU-A3HZ-01 X 99550807 99550807 T C PCDH19 3'UTR 0.50 TCGA-FU-A3HZ-01 X 99664292 99664292 C T PCDH19 5'UTR 0.45 TCGA-FU-A3HZ-01 X 99930370 99930370 G T SYTL4 3'UTR 0.28 TCGA-FU-A3NI-01 10 112053215 112053215 G A SMNDC1 3'UTR 0.44 TCGA-FU-A3NI-01 10 11371034 11371034 C G CELF2 3'UTR 0.45 TCGA-FU-A3NI-01 10 120819626 120819626 G C EIF3A Intron 0.27 TCGA-FU-A3NI-01 10 16526606 16526606 C T PTER Nonsense_Mutation p.Q75* 0.15 TCGA-FU-A3NI-01 10 29833999 29833999 G T SVIL Intron 0.19 TCGA-FU-A3NI-01 10 29843713 29843713 G A SVIL Silent p.I53I 0.17 TCGA-FU-A3NI-01 11 117387317 117387317 G A DSCAML1 Missense_Mutation p.R610C 0.68 deleterious(0) probably_damaging(1) TCGA-FU-A3NI-01 11 64567842 64567842 G A MAP4K2 Missense_Mutation p.L250F 0.35 deleterious(0) probably_damaging(0.917) TCGA-FU-A3NI-01 12 102159990 102159990 T A GNPTAB Silent p.G497G 0.24 TCGA-FU-A3NI-01 12 102159991 102159991 C A GNPTAB Missense_Mutation p.G497V 0.24 deleterious(0.04) benign(0.076) TCGA-FU-A3NI-01 12 109728038 109728038 G A FOXN4 Missense_Mutation p.S47L 0.42 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-FU-A3NI-01 12 109838973 109838973 C T MYO1H Missense_Mutation p.R200W 0.42 deleterious(0) probably_damaging(1) TCGA-FU-A3NI-01 12 119563259 119563259 T C SRRM4 Missense_Mutation p.S197P 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-FU-A3NI-01 12 124809329 124809329 G A NCOR2 3'UTR 0.10 TCGA-FU-A3NI-01 12 132610547 132610547 C T RP13-977J11.5 3'Flank 0.49 TCGA-FU-A3NI-01 12 49951381 49951381 C T KCNH3 Missense_Mutation p.P966L 0.35 tolerated_low_confidence(0.14) benign(0.125) TCGA-FU-A3NI-01 12 5024908 5024908 G A KCNA1 3'UTR 0.47 TCGA-FU-A3NI-01 12 54447821 54447821 C T HOXC4 Missense_Mutation p.R39W 0.36 deleterious(0) possibly_damaging(0.898) TCGA-FU-A3NI-01 12 65857049 65857049 G A MSRB3 Missense_Mutation p.E176K 0.24 tolerated(0.38) benign(0) TCGA-FU-A3NI-01 12 71050540 71050540 C T PTPRR Silent p.L608L 0.32 TCGA-FU-A3NI-01 12 7868012 7868012 G A DPPA3 Missense_Mutation p.G106R 0.22 tolerated(0.76) benign(0) TCGA-FU-A3NI-01 12 94729391 94729391 T C CCDC41 Missense_Mutation p.K465E 0.19 deleterious(0) benign(0.423) TCGA-FU-A3NI-01 13 108861664 108861664 G A LIG4 Silent p.N651N 0.40 TCGA-FU-A3NI-01 13 108882391 108882391 G C ABHD13 Missense_Mutation p.M275I 0.56 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A3NI-01 13 31712560 31712560 A G HSPH1 Missense_Mutation p.I785T 0.07 deleterious(0) probably_damaging(0.996) TCGA-FU-A3NI-01 13 50594391 50594391 G A KCNRG Missense_Mutation p.G207E 0.74 deleterious(0.01) possibly_damaging(0.714) TCGA-FU-A3NI-01 14 101436281 101436281 G A SNORD114-13 RNA 0.16 TCGA-FU-A3NI-01 14 105618303 105618303 G A JAG2 Silent p.D337D 0.26 TCGA-FU-A3NI-01 14 105848292 105848292 C T PACS2 Missense_Mutation p.S437F 0.18 deleterious(0.04) probably_damaging(0.991) TCGA-FU-A3NI-01 14 60591234 60591234 T C PCNXL4 Missense_Mutation p.V548A 0.22 tolerated(0.63) benign(0.007) TCGA-FU-A3NI-01 14 61747570 61747570 G A TMEM30B Missense_Mutation p.S99L 0.16 deleterious(0.03) benign(0.118) TCGA-FU-A3NI-01 14 88434811 88434811 G A GALC Missense_Mutation p.S259L 0.10 deleterious(0.01) benign(0.014) TCGA-FU-A3NI-01 15 23044305 23044305 G C NIPA1 3'UTR 0.17 TCGA-FU-A3NI-01 15 26108099 26108099 G A ATP10A Missense_Mutation p.R49W 0.27 tolerated(0.09) possibly_damaging(0.627) TCGA-FU-A3NI-01 15 65759495 65759495 G A DPP8 Missense_Mutation p.H551Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-FU-A3NI-01 15 68126105 68126105 C T SKOR1 Silent p.F846F 0.41 TCGA-FU-A3NI-01 15 80762742 80762742 C A ARNT2 Silent p.G126G 0.32 TCGA-FU-A3NI-01 15 91827396 91827396 C T SV2B Silent p.P551P 0.23 TCGA-FU-A3NI-01 16 1994732 1994732 G A RPL3L 3'UTR 0.28 TCGA-FU-A3NI-01 16 2546267 2546267 C T RP11-20I23.1 Missense_Mutation p.R40C 0.14 deleterious(0) probably_damaging(1) TCGA-FU-A3NI-01 16 28354507 28354507 G A NPIPB6 Silent p.V233V 0.13 TCGA-FU-A3NI-01 16 3611719 3611719 G A NLRC3 Missense_Mutation p.R714C 0.16 tolerated(0.05) benign(0.035) TCGA-FU-A3NI-01 16 50745398 50745399 - C NOD2 Frame_Shift_Ins p.D529Rfs*50 0.43 TCGA-FU-A3NI-01 16 51174607 51174607 T C SALL1 Missense_Mutation p.N509S 0.18 deleterious(0) probably_damaging(0.977) TCGA-FU-A3NI-01 17 28601165 28601165 G A BLMH Silent p.T232T 0.20 TCGA-FU-A3NI-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.26 deleterious(0) probably_damaging(0.994) TCGA-FU-A3NI-01 17 39594972 39594972 C A KRT38 Missense_Mutation p.V291L 0.40 tolerated(0.07) benign(0.057) TCGA-FU-A3NI-01 17 4624633 4624633 A G ARRB2 3'UTR 0.42 TCGA-FU-A3NI-01 17 47044537 47044537 G T GIP Missense_Mutation p.L20I 0.26 deleterious(0.02) possibly_damaging(0.609) TCGA-FU-A3NI-01 17 73257949 73257949 G A MRPS7 5'UTR 0.20 TCGA-FU-A3NI-01 17 7357837 7357837 C T CHRNB1 Nonsense_Mutation p.Q348* 0.15 TCGA-FU-A3NI-01 17 73738776 73738776 G A ITGB4 Missense_Mutation p.D966N 0.49 tolerated(0.06) benign(0.052) TCGA-FU-A3NI-01 17 73816073 73816073 C T UNK Missense_Mutation p.S574L 0.16 tolerated(0.11) probably_damaging(0.989) TCGA-FU-A3NI-01 17 77709214 77709214 G A ENPP7 Missense_Mutation p.D258N 0.17 tolerated(0.37) benign(0.396) TCGA-FU-A3NI-01 17 79214909 79214909 G A C17orf89 3'UTR 0.56 TCGA-FU-A3NI-01 18 24495925 24495925 A C CHST9 3'UTR 0.21 TCGA-FU-A3NI-01 18 43224124 43224124 C T SLC14A2 Silent p.S450S 0.18 TCGA-FU-A3NI-01 18 51858190 51858190 C T STARD6 Missense_Mutation p.V103M 0.26 tolerated(1) benign(0) TCGA-FU-A3NI-01 18 55155677 55155677 G C ONECUT2 3'UTR 0.38 TCGA-FU-A3NI-01 19 11486566 11486566 G A SWSAP1 Silent p.G188G 0.27 TCGA-FU-A3NI-01 19 21934344 21934344 G T ZNF100 Intron 0.22 TCGA-FU-A3NI-01 19 35250659 35250659 C T ZNF599 Silent p.T349T 0.42 TCGA-FU-A3NI-01 19 36348063 36348063 C T KIRREL2 Silent p.F14F 0.29 TCGA-FU-A3NI-01 19 42860054 42860054 C T MEGF8 Missense_Mutation p.A1363V 0.54 tolerated(0.11) benign(0.006) TCGA-FU-A3NI-01 19 53057757 53057757 C T ZNF808 Missense_Mutation p.R530C 0.32 deleterious(0.03) possibly_damaging(0.898) TCGA-FU-A3NI-01 19 59022833 59022833 C G SLC27A5 Missense_Mutation p.G164R 0.28 deleterious(0.02) benign(0.054) TCGA-FU-A3NI-01 19 7584278 7584278 C G ZNF358 Silent p.L50L 0.31 TCGA-FU-A3NI-01 19 806433 806433 C T PTBP1 Silent p.G332G 0.25 TCGA-FU-A3NI-01 1 10240928 10240928 C T UBE4B 3'UTR 0.21 TCGA-FU-A3NI-01 1 118168911 118168911 T - FAM46C 3'UTR 0.29 TCGA-FU-A3NI-01 1 12009848 12009848 G A PLOD1 Missense_Mutation p.D63N 0.33 deleterious(0.03) benign(0.066) TCGA-FU-A3NI-01 1 1263337 1263337 C T GLTPD1 3'UTR 0.42 TCGA-FU-A3NI-01 1 152285314 152285314 C T FLG Missense_Mutation p.R683H 0.47 benign(0.023) TCGA-FU-A3NI-01 1 169391134 169391134 C T CCDC181 Missense_Mutation p.E179K 0.14 deleterious(0.05) probably_damaging(0.981) TCGA-FU-A3NI-01 1 16946492 16946492 C T RP5-1182A14.5 3'Flank 0.14 TCGA-FU-A3NI-01 1 173795921 173795921 G A DARS2 Missense_Mutation p.R75Q 0.52 tolerated(0.86) benign(0.022) TCGA-FU-A3NI-01 1 182844012 182844012 C G DHX9 Missense_Mutation p.Q580E 0.10 tolerated(0.43) benign(0.115) TCGA-FU-A3NI-01 1 196648881 196648881 G A CFH Missense_Mutation p.V250I 0.17 tolerated(0.37) benign(0.065) TCGA-FU-A3NI-01 20 2125190 2125190 G T STK35 3'UTR 0.31 TCGA-FU-A3NI-01 20 24523745 24523745 C T SYNDIG1 Silent p.I4I 0.16 TCGA-FU-A3NI-01 20 36869138 36869138 C T KIAA1755 Silent p.E465E 0.09 TCGA-FU-A3NI-01 20 45085561 45085561 C T ZNF663P RNA 0.17 TCGA-FU-A3NI-01 20 45169725 45169725 G A OCSTAMP 3'UTR 0.44 TCGA-FU-A3NI-01 21 46353800 46353800 C T C21orf67 3'Flank 0.47 TCGA-FU-A3NI-01 22 41572870 41572870 C T EP300 Nonsense_Mutation p.Q1719* 0.55 TCGA-FU-A3NI-01 22 50705350 50705350 C A MAPK11 Intron 0.10 TCGA-FU-A3NI-01 2 100217938 100217938 C T AFF3 Missense_Mutation p.E469K 0.14 deleterious(0.01) possibly_damaging(0.517) TCGA-FU-A3NI-01 2 107041079 107041079 G A RGPD3 Missense_Mutation p.T1115M 0.17 deleterious(0) possibly_damaging(0.476) TCGA-FU-A3NI-01 2 128783857 128783857 G A SAP130 Nonsense_Mutation p.Q30* 0.21 TCGA-FU-A3NI-01 2 136422986 136422986 C - R3HDM1 Intron 0.34 TCGA-FU-A3NI-01 2 155712251 155712251 G T KCNJ3 3'UTR 0.52 TCGA-FU-A3NI-01 2 160027048 160027048 C T TANC1 Silent p.P361P 0.56 TCGA-FU-A3NI-01 2 175440046 175440046 C T WIPF1 Missense_Mutation p.G82R 0.32 tolerated(0.34) possibly_damaging(0.587) TCGA-FU-A3NI-01 2 189387534 189387534 G A GULP1 Missense_Mutation p.D48N 0.39 deleterious(0.02) possibly_damaging(0.868) TCGA-FU-A3NI-01 2 238289881 238289881 G A COL6A3 Missense_Mutation p.T525M 0.74 probably_damaging(0.997) TCGA-FU-A3NI-01 2 48059543 48059543 C T FBXO11 Missense_Mutation p.R448Q 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-FU-A3NI-01 2 61561086 61561086 C T USP34 Missense_Mutation p.R922H 0.48 deleterious(0) probably_damaging(0.995) TCGA-FU-A3NI-01 2 79312385 79312385 G C REG1B Missense_Mutation p.S153C 0.23 deleterious(0.01) benign(0.285) TCGA-FU-A3NI-01 3 112299501 112299501 A G SLC35A5 Silent p.G179G 0.21 TCGA-FU-A3NI-01 3 119232527 119232527 G A TIMMDC1 Missense_Mutation p.R186H 0.10 tolerated(0.1) benign(0.019) TCGA-FU-A3NI-01 3 130464099 130464099 G A PIK3R4 5'UTR 0.07 TCGA-FU-A3NI-01 3 133306072 133306072 G T CDV3 Intron 0.24 TCGA-FU-A3NI-01 3 134979190 134979190 C T EPHB1 3'UTR 0.20 TCGA-FU-A3NI-01 3 173998546 173998546 A G NLGN1 Missense_Mutation p.N642S 0.12 tolerated(0.85) benign(0.023) TCGA-FU-A3NI-01 3 180630450 180630450 C T FXR1 5'UTR 0.24 TCGA-FU-A3NI-01 3 190374255 190374255 C T IL1RAP Silent p.L641L 0.28 TCGA-FU-A3NI-01 3 195511636 195511636 G A MUC4 Missense_Mutation p.S2272F 0.09 unknown(0) TCGA-FU-A3NI-01 3 195512786 195512786 G A MUC4 Missense_Mutation p.L1889F 0.09 unknown(0) TCGA-FU-A3NI-01 3 3171685 3171685 G A TRNT1 Intron 0.59 TCGA-FU-A3NI-01 4 100528037 100528037 G A MTTP Missense_Mutation p.A493T 0.40 tolerated(0.06) benign(0.247) TCGA-FU-A3NI-01 4 129782960 129782960 C T JADE1 Silent p.F361F 0.26 TCGA-FU-A3NI-01 4 26487308 26487308 C A CCKAR Missense_Mutation p.A193S 0.07 tolerated(0.15) benign(0.102) TCGA-FU-A3NI-01 5 128994312 128994312 A T ADAMTS19 Missense_Mutation p.K763N 0.59 deleterious(0.01) possibly_damaging(0.873) TCGA-FU-A3NI-01 5 129072808 129072808 G A ADAMTS19 Missense_Mutation p.R1174Q 0.31 tolerated(0.07) possibly_damaging(0.904) TCGA-FU-A3NI-01 5 140176333 140176333 G A PCDHA2 Missense_Mutation p.R595H 0.21 tolerated_low_confidence(0.06) benign(0.214) TCGA-FU-A3NI-01 5 147929786 147929786 C T HTR4 Silent p.L22L 0.40 TCGA-FU-A3NI-01 5 16755013 16755013 G A MYO10 Missense_Mutation p.S618L 0.18 deleterious(0) probably_damaging(0.994) TCGA-FU-A3NI-01 5 179225231 179225231 G A MGAT4B Silent p.F534F 0.59 TCGA-FU-A3NI-01 5 191752 191752 C G LRRC14B Silent p.L33L 0.21 TCGA-FU-A3NI-01 5 34950383 34950383 C T DNAJC21 Nonsense_Mutation p.Q477* 0.09 TCGA-FU-A3NI-01 5 45695897 45695897 G A HCN1 Missense_Mutation p.S100F 0.29 deleterious(0) possibly_damaging(0.761) TCGA-FU-A3NI-01 6 143073903 143073903 G A HIVEP2 3'UTR 0.48 TCGA-FU-A3NI-01 6 145051606 145051606 C G UTRN Missense_Mutation p.N2641K 0.25 tolerated(0.08) benign(0.089) TCGA-FU-A3NI-01 6 27834744 27834744 C G HIST1H1B Missense_Mutation p.K188N 0.46 deleterious(0) unknown(0) TCGA-FU-A3NI-01 6 32130686 32130686 C T PPT2 Missense_Mutation p.R296C 0.20 tolerated(0.17) possibly_damaging(0.67) TCGA-FU-A3NI-01 7 107303812 107303812 G A SLC26A4 Missense_Mutation p.R79Q 0.47 tolerated(0.17) benign(0.109) TCGA-FU-A3NI-01 7 107790405 107790405 C T NRCAM Missense_Mutation p.E1289K 0.13 deleterious(0.05) benign(0.362) TCGA-FU-A3NI-01 7 117232394 117232394 G A CFTR Missense_Mutation p.E725K 0.16 tolerated(0.05) benign(0.364) TCGA-FU-A3NI-01 7 120388178 120388178 C G KCND2 3'UTR 0.32 TCGA-FU-A3NI-01 7 130056775 130056775 C T CEP41 Missense_Mutation p.E44K 0.22 deleterious(0) possibly_damaging(0.887) TCGA-FU-A3NI-01 7 132193251 132193251 C T PLXNA4 Missense_Mutation p.V68I 0.24 tolerated(0.21) benign(0.038) TCGA-FU-A3NI-01 7 149171493 149171493 G A ZNF746 Silent p.T640T 0.16 TCGA-FU-A3NI-01 7 154860848 154860848 G C HTR5A-AS1 3'UTR 0.22 TCGA-FU-A3NI-01 7 64293624 64293624 C T ZNF138 3'Flank 0.06 TCGA-FU-A3NI-01 7 64437814 64437814 A G ZNF117 3'UTR 0.13 TCGA-FU-A3NI-01 7 77789556 77789556 G C MAGI2 Silent p.G877G 0.39 TCGA-FU-A3NI-01 7 99698925 99698925 G A MCM7 5'UTR 0.20 TCGA-FU-A3NI-01 8 139606405 139606405 C T COL22A1 Silent p.A1490A 0.29 TCGA-FU-A3NI-01 8 2037985 2037985 C T MYOM2 Missense_Mutation p.T600M 0.36 deleterious(0) probably_damaging(0.999) TCGA-FU-A3NI-01 8 77779035 77779035 A - ZFHX4 3'UTR 0.39 TCGA-FU-A3NI-01 9 105767775 105767775 G A CYLC2 Missense_Mutation p.V288I 0.41 tolerated_low_confidence(0.07) unknown(0) TCGA-FU-A3NI-01 9 139342933 139342933 G A SEC16A Intron 0.13 TCGA-FU-A3NI-01 X 114141941 114141941 C T HTR2C Missense_Mutation p.P447L 0.06 deleterious_low_confidence(0.03) benign(0.016) TCGA-FU-A3NI-01 X 114426138 114426138 C T RBMXL3 Nonsense_Mutation p.R712* 0.11 TCGA-FU-A3NI-01 X 122538637 122538637 C A GRIA3 Missense_Mutation p.L458I 0.14 deleterious(0) possibly_damaging(0.803) TCGA-FU-A3NI-01 X 12904954 12904954 G T TLR7 Missense_Mutation p.G443C 0.17 deleterious(0.02) benign(0.043) TCGA-FU-A3NI-01 X 133379541 133379541 G A CCDC160 Silent p.E237E 0.09 TCGA-FU-A3NI-01 X 13753462 13753462 C G OFD1 Silent p.L36L 0.42 TCGA-FU-A3NI-01 X 139099890 139099890 A T RP11-364B14.1 RNA 0.14 TCGA-FU-A3NI-01 X 153694354 153694354 G A PLXNA3 Missense_Mutation p.R870Q 0.18 tolerated(0.33) benign(0.439) TCGA-FU-A3NI-01 X 1540565 1540565 C T ASMTL Missense_Mutation p.E411K 0.23 tolerated(0.29) benign(0.142) TCGA-FU-A3NI-01 X 19392605 19392605 G A MAP3K15 Silent p.F921F 0.09 TCGA-FU-A3NI-01 X 24580297 24580297 C T PCYT1B 3'UTR 0.38 TCGA-FU-A3NI-01 X 33357379 33357379 C T DMD Missense_Mutation p.E2K 0.30 tolerated_low_confidence(0.76) benign(0.013) TCGA-FU-A3NI-01 X 44911048 44911048 G A KDM6A Splice_Site p.X250_splice 0.53 TCGA-FU-A3NI-01 X 47104246 47104246 G A USP11 Missense_Mutation p.R713H 0.26 tolerated(0.07) probably_damaging(0.967) TCGA-FU-A3NI-01 X 47435556 47435556 T G SYN1 Missense_Mutation p.K378Q 0.22 deleterious(0) possibly_damaging(0.9) TCGA-FU-A3NI-01 X 51150397 51150397 C T CXorf67 Missense_Mutation p.P177S 0.27 tolerated(0.47) benign(0.013) TCGA-FU-A3NI-01 X 53268449 53268451 TCT - IQSEC2 In_Frame_Del p.K1014del 0.20 TCGA-FU-A3NI-01 X 54839587 54839587 G A MAGED2 Missense_Mutation p.R401H 0.30 tolerated(0.15) benign(0.065) TCGA-FU-A3NI-01 X 54957839 54957839 G C TRO 3'UTR 0.32 TCGA-FU-A3NI-01 X 77131014 77131014 G A MAGT1 Silent p.F93F 0.12 TCGA-FU-A3NI-01 X 77393456 77393456 C T TAF9B Intron 0.34 TCGA-FU-A3TQ-01 10 27702694 27702694 G A PTCHD3 Silent p.D162D 0.36 TCGA-FU-A3TQ-01 10 89624269 89624269 A T PTEN Nonsense_Mutation p.R15* 0.48 TCGA-FU-A3TQ-01 11 4967395 4967395 C A OR51A4 Missense_Mutation p.K312N 0.23 tolerated(0.05) benign(0.028) TCGA-FU-A3TQ-01 11 6007128 6007128 C T OR52L1 3'UTR 0.27 TCGA-FU-A3TQ-01 12 109961863 109961863 G A UBE3B Silent p.S815S 0.30 TCGA-FU-A3TQ-01 12 120899902 120899902 G A SRSF9 Missense_Mutation p.R196W 0.29 deleterious(0) probably_damaging(0.985) TCGA-FU-A3TQ-01 12 52881697 52881697 C T KRT6A Missense_Mutation p.S501N 0.13 tolerated(0.39) unknown(0) TCGA-FU-A3TQ-01 14 19377748 19377748 T G OR11H12 Missense_Mutation p.L52R 0.48 deleterious(0) probably_damaging(0.933) TCGA-FU-A3TQ-01 14 23884925 23884925 G A MYH7 Silent p.A1690A 0.30 TCGA-FU-A3TQ-01 14 45693777 45693777 G A MIS18BP1 Silent p.S671S 0.38 TCGA-FU-A3TQ-01 14 68244947 68244947 C G ZFYVE26 Missense_Mutation p.E1565Q 0.28 tolerated(0.37) benign(0.405) TCGA-FU-A3TQ-01 15 78316871 78316871 C T TBC1D2B Missense_Mutation p.R366Q 0.42 tolerated(0.05) benign(0.104) TCGA-FU-A3TQ-01 16 2854483 2854483 G A PRSS41 RNA 0.51 TCGA-FU-A3TQ-01 16 88666329 88666329 G A ZC3H18 Missense_Mutation p.R354Q 0.59 tolerated_low_confidence(0.06) unknown(0) TCGA-FU-A3TQ-01 17 73100198 73100198 C T SLC16A5 Silent p.V429V 0.17 TCGA-FU-A3TQ-01 17 80789577 80789578 - C ZNF750 Frame_Shift_Ins p.L252Afs*16 0.37 TCGA-FU-A3TQ-01 19 12788010 12788010 T C DHPS Missense_Mutation p.N267S 0.31 deleterious(0) probably_damaging(0.963) TCGA-FU-A3TQ-01 19 21608871 21608871 C G ZNF493 3'UTR 0.40 TCGA-FU-A3TQ-01 19 38655260 38655260 G T SIPA1L3 Missense_Mutation p.D1308Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-FU-A3TQ-01 1 10720361 10720361 G A CASZ1 Silent p.L246L 0.30 TCGA-FU-A3TQ-01 1 15904321 15904321 C T AGMAT Silent p.K253K 0.28 TCGA-FU-A3TQ-01 1 159922138 159922138 T C SLAMF9 Missense_Mutation p.D193G 0.31 deleterious(0.01) probably_damaging(0.968) TCGA-FU-A3TQ-01 1 19981847 19981847 C T MINOS1-NBL1 Silent p.S67S 0.20 TCGA-FU-A3TQ-01 1 205628400 205628400 C T SLC45A3 Missense_Mutation p.V542I 0.39 tolerated(0.22) benign(0.125) TCGA-FU-A3TQ-01 1 32050317 32050317 C T TINAGL1 Silent p.F207F 0.23 TCGA-FU-A3TQ-01 1 35370768 35370768 G A DLGAP3 Missense_Mutation p.P73S 0.30 tolerated_low_confidence(0.16) possibly_damaging(0.857) TCGA-FU-A3TQ-01 1 72400779 72400779 A G NEGR1 Missense_Mutation p.V131A 0.23 deleterious(0) probably_damaging(0.936) TCGA-FU-A3TQ-01 1 89300742 89300742 G C PKN2 3'UTR 0.15 TCGA-FU-A3TQ-01 1 9324266 9324266 G A H6PD Missense_Mutation p.E572K 0.31 tolerated(0.25) benign(0.313) TCGA-FU-A3TQ-01 20 17640441 17640441 G A RRBP1 Intron 0.39 TCGA-FU-A3TQ-01 20 18445975 18445975 G C DZANK1 Missense_Mutation p.Q10E 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-FU-A3TQ-01 21 36164595 36164595 C T RUNX1 Missense_Mutation p.R427H 0.38 deleterious(0) probably_damaging(0.959) TCGA-FU-A3TQ-01 21 37602874 37602874 C G DOPEY2 Missense_Mutation p.P598A 0.27 deleterious(0.04) possibly_damaging(0.54) TCGA-FU-A3TQ-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.48 deleterious(0) probably_damaging(0.999) TCGA-FU-A3TQ-01 22 29727818 29727818 C T AP1B1 Silent p.T799T 0.35 TCGA-FU-A3TQ-01 22 41556727 41556727 G A EP300 Splice_Site p.X1224_splice 0.33 TCGA-FU-A3TQ-01 22 46829324 46829325 - TG CELSR1 Frame_Shift_Ins p.R1526Pfs*33 0.25 TCGA-FU-A3TQ-01 2 11268861 11268861 A G C2orf50 5'Flank 0.36 TCGA-FU-A3TQ-01 2 179590682 179590682 C T TTN Silent p.P6789P 0.38 TCGA-FU-A3TQ-01 2 209220520 209220520 T C PIKFYVE 3'UTR 0.23 TCGA-FU-A3TQ-01 2 214794778 214794778 C T SPAG16 Missense_Mutation p.R437C 0.14 deleterious(0.02) possibly_damaging(0.72) TCGA-FU-A3TQ-01 2 236653346 236653346 C A AGAP1 Missense_Mutation p.A134D 0.32 deleterious(0) probably_damaging(0.999) TCGA-FU-A3TQ-01 2 36808656 36808656 C A FEZ2 Intron 0.28 TCGA-FU-A3TQ-01 2 3691438 3691438 C T COLEC11 Silent p.D196D 0.26 TCGA-FU-A3TQ-01 2 47596298 47596298 C G EPCAM 5'UTR 0.55 TCGA-FU-A3TQ-01 2 96601243 96601243 T C ANKRD36C 3'UTR 0.21 TCGA-FU-A3TQ-01 3 142266662 142266662 G C ATR Missense_Mutation p.Q1088E 0.37 tolerated(0.35) probably_damaging(0.989) TCGA-FU-A3TQ-01 3 179287873 179287873 A G ACTL6A Missense_Mutation p.I41V 0.32 tolerated(1) benign(0.009) TCGA-FU-A3TQ-01 3 36534667 36534667 G A STAC Missense_Mutation p.E238K 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-FU-A3TQ-01 3 38408351 38408351 A T XYLB Missense_Mutation p.Y187F 0.33 tolerated(0.07) possibly_damaging(0.582) TCGA-FU-A3TQ-01 4 149035254 149035254 C T NR3C2 Splice_Site p.X933_splice 0.32 TCGA-FU-A3TQ-01 4 152622537 152622537 G A PET112 Nonsense_Mutation p.R381* 0.38 TCGA-FU-A3TQ-01 4 39000444 39000444 C T TMEM156 Silent p.V58V 0.26 TCGA-FU-A3TQ-01 4 75067078 75067078 C T MTHFD2L Missense_Mutation p.R235W 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-FU-A3TQ-01 5 108745588 108745588 A C PJA2 5'UTR 0.32 TCGA-FU-A3TQ-01 5 140216124 140216124 C T PCDHA7 Missense_Mutation p.T719M 0.30 tolerated_low_confidence(0.06) benign(0.126) TCGA-FU-A3TQ-01 5 140431083 140431083 C G PCDHB1 Missense_Mutation p.Q10E 0.37 tolerated(0.16) benign(0.024) TCGA-FU-A3TQ-01 5 150911185 150911185 C T FAT2 Silent p.G3258G 0.32 TCGA-FU-A3TQ-01 5 150947427 150947427 T G FAT2 Missense_Mutation p.K356Q 0.26 benign(0.011) TCGA-FU-A3TQ-01 5 176395779 176395779 G C UIMC1 Missense_Mutation p.P326R 0.42 deleterious(0) probably_damaging(0.999) TCGA-FU-A3TQ-01 5 178415974 178415974 C T GRM6 Missense_Mutation p.R439Q 0.05 tolerated(0.19) benign(0.015) TCGA-FU-A3TQ-01 6 25855375 25855375 A G SLC17A3 Missense_Mutation p.F237L 0.17 tolerated(0.05) benign(0.232) TCGA-FU-A3TQ-01 6 26240698 26240698 C T HIST1H4F Silent p.G15G 0.31 TCGA-FU-A3TQ-01 6 29141347 29141347 G A OR2J2 5'UTR 0.23 TCGA-FU-A3TQ-01 6 31323001 31323001 C G HLA-B Splice_Site p.X299_splice 0.28 TCGA-FU-A3TQ-01 6 35260671 35260671 C T ZNF76 Silent p.A393A 0.28 TCGA-FU-A3TQ-01 6 43316363 43316363 C A ZNF318 Missense_Mutation p.G924V 0.35 probably_damaging(1) TCGA-FU-A3TQ-01 7 2564882 2564882 G T LFNG Missense_Mutation p.A171S 0.34 tolerated(0.19) benign(0.051) TCGA-FU-A3TQ-01 7 31864488 31864488 G A PDE1C Missense_Mutation p.R527C 0.36 deleterious(0) probably_damaging(0.95) TCGA-FU-A3TQ-01 7 34979922 34979922 A G DPY19L1 Silent p.F496F 0.39 TCGA-FU-A3TQ-01 7 7634623 7634623 G A MIOS Missense_Mutation p.D686N 0.29 tolerated(0.19) benign(0.015) TCGA-FU-A3TQ-01 8 124827421 124827422 - T FAM91A1 3'UTR 0.24 TCGA-FU-A3TQ-01 9 102744460 102744460 G C ERP44 3'UTR 0.22 TCGA-FU-A3TQ-01 9 131454136 131454136 G C SET Splice_Site p.X57_splice 0.26 TCGA-FU-A3TQ-01 9 35717356 35717356 C T TLN1 Missense_Mutation p.G749S 0.34 tolerated(0.53) possibly_damaging(0.793) TCGA-FU-A3TQ-01 9 90499541 90499541 C T SPATA31E1 Missense_Mutation p.R134W 0.31 deleterious(0) benign(0.08) TCGA-FU-A3TQ-01 X 133941588 133941588 G A FAM122C 5'UTR 0.27 TCGA-FU-A3TQ-01 X 140270994 140270994 C T LDOC1 Silent p.T71T 0.36 TCGA-FU-A3TQ-01 X 140967150 140967150 A G MAGEC3 Missense_Mutation p.T150A 0.33 tolerated_low_confidence(0.61) benign(0) TCGA-FU-A3TQ-01 X 30326793 30326793 G A NR0B1 Missense_Mutation p.R230W 0.30 deleterious(0.01) possibly_damaging(0.733) TCGA-FU-A3TQ-01 X 32536027 32536027 G A DMD Intron 0.28 TCGA-FU-A3TQ-01 X 47486559 47486559 G A CFP Silent p.T249T 0.36 TCGA-FU-A3TQ-01 X 48269517 48269517 C A SSX4B Splice_Site p.X62_splice 0.19 TCGA-FU-A3TQ-01 X 69478345 69478345 T A P2RY4 3'UTR 0.33 TCGA-FU-A3TQ-01 X 70344125 70344125 C T MED12 Nonsense_Mutation p.R621* 0.30 TCGA-FU-A3TQ-01 X 9660204 9660204 G A TBL1X Silent p.G267G 0.47 TCGA-FU-A3TX-01 10 45479462 45479462 G A RASSF4 Intron 0.28 TCGA-FU-A3TX-01 11 111965693 111965693 G C SDHD Nonstop_Mutation p.*160Sext*3 0.10 TCGA-FU-A3TX-01 11 117094021 117094021 G A PCSK7 Missense_Mutation p.A353V 0.62 deleterious(0) probably_damaging(1) TCGA-FU-A3TX-01 11 60666347 60666347 C G PRPF19 Missense_Mutation p.E347D 0.32 tolerated(0.43) benign(0.004) TCGA-FU-A3TX-01 11 62416283 62416283 C G INTS5 Missense_Mutation p.Q423H 0.31 tolerated(0.06) benign(0.243) TCGA-FU-A3TX-01 11 77728119 77728119 C T KCTD14 Silent p.G96G 0.48 TCGA-FU-A3TX-01 11 836354 836354 T G CD151 Missense_Mutation p.I63S 0.54 deleterious(0.04) benign(0.128) TCGA-FU-A3TX-01 11 94926637 94926637 A C SESN3 Missense_Mutation p.F43C 0.17 deleterious(0) probably_damaging(0.997) TCGA-FU-A3TX-01 12 176519 176519 G A IQSEC3 Silent p.P157P 0.10 TCGA-FU-A3TX-01 12 43944941 43944941 G A ADAMTS20 Missense_Mutation p.P75L 0.17 deleterious(0.05) benign(0.087) TCGA-FU-A3TX-01 12 57556149 57556149 A G LRP1 Missense_Mutation p.H751R 0.48 benign(0.094) TCGA-FU-A3TX-01 12 70003979 70003979 G C LRRC10 Missense_Mutation p.L214V 0.53 deleterious(0.03) probably_damaging(0.997) TCGA-FU-A3TX-01 13 108861015 108861015 C T LIG4 Missense_Mutation p.D868N 0.40 deleterious(0.01) benign(0.103) TCGA-FU-A3TX-01 15 65931952 65931952 G A SLC24A1 Missense_Mutation p.R655Q 0.54 benign(0.038) TCGA-FU-A3TX-01 16 11971344 11971344 C T GSPT1 Missense_Mutation p.E508K 0.51 deleterious(0) probably_damaging(0.931) TCGA-FU-A3TX-01 16 3801726 3801726 C T CREBBP Splice_Site p.X1260_splice 0.62 TCGA-FU-A3TX-01 17 11701024 11701024 C A DNAH9 Silent p.T2778T 0.31 TCGA-FU-A3TX-01 17 11786911 11786911 C T DNAH9 Silent p.L3605L 0.14 TCGA-FU-A3TX-01 17 1629541 1629541 G C WDR81 Missense_Mutation p.G430R 0.47 tolerated(0.05) possibly_damaging(0.706) TCGA-FU-A3TX-01 17 1683080 1683080 C T SMYD4 3'UTR 0.21 TCGA-FU-A3TX-01 17 29227455 29227455 G T TEFM Nonsense_Mutation p.Y207* 0.19 TCGA-FU-A3TX-01 17 36486721 36486721 C T GPR179 Missense_Mutation p.V911M 0.27 tolerated(0.5) benign(0.003) TCGA-FU-A3TX-01 17 40316184 40316184 G A KCNH4 Silent p.G696G 0.73 TCGA-FU-A3TX-01 17 41228571 41228571 G T BRCA1 Missense_Mutation p.S1494Y 0.60 deleterious(0) possibly_damaging(0.8) TCGA-FU-A3TX-01 17 48145499 48145499 G A ITGA3 Missense_Mutation p.R165Q 0.39 deleterious(0.01) probably_damaging(0.94) TCGA-FU-A3TX-01 17 56232955 56232955 C T OR4D1 Silent p.A147A 0.30 TCGA-FU-A3TX-01 17 58144895 58144895 C G HEATR6 Missense_Mutation p.D380H 0.20 deleterious(0.04) benign(0.136) TCGA-FU-A3TX-01 17 58299795 58299795 C G USP32 Missense_Mutation p.G575A 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-FU-A3TX-01 17 61499383 61499383 C T TANC2 3'UTR 0.24 TCGA-FU-A3TX-01 17 7756374 7756374 G T KDM6B Missense_Mutation p.R1556L 0.52 possibly_damaging(0.825) TCGA-FU-A3TX-01 18 55322503 55322503 G A ATP8B1 Nonsense_Mutation p.R952* 0.15 TCGA-FU-A3TX-01 19 20844376 20844376 A - ZNF626 5'UTR 0.27 TCGA-FU-A3TX-01 19 47423967 47423967 G T ARHGAP35 Nonsense_Mutation p.E679* 0.45 TCGA-FU-A3TX-01 19 51009328 51009328 C T JOSD2 3'UTR 0.28 TCGA-FU-A3TX-01 19 53571415 53571415 C T ZNF160 Missense_Mutation p.C791Y 0.44 deleterious(0.01) possibly_damaging(0.86) TCGA-FU-A3TX-01 19 53573149 53573149 T C ZNF160 Missense_Mutation p.N213S 0.33 tolerated(0.33) benign(0.025) TCGA-FU-A3TX-01 19 55877055 55877055 T C IL11 3'UTR 0.21 TCGA-FU-A3TX-01 19 58059250 58059250 G A ZNF550 Missense_Mutation p.S80L 0.32 tolerated(0.11) benign(0.122) TCGA-FU-A3TX-01 1 109514103 109514103 G A WDR47 Silent p.F911F 0.31 TCGA-FU-A3TX-01 1 119683254 119683254 G A WARS2 Missense_Mutation p.S5L 0.30 tolerated_low_confidence(0.6) benign(0.002) TCGA-FU-A3TX-01 1 1263906 1263906 C T GLTPD1 3'UTR 0.11 TCGA-FU-A3TX-01 1 144879121 144879121 C T PDE4DIP Silent p.Q1443Q 0.18 TCGA-FU-A3TX-01 1 158627401 158627401 G A SPTA1 Nonsense_Mutation p.R891* 0.63 TCGA-FU-A3TX-01 1 203771438 203771438 G C ZC3H11A 5'UTR 0.24 TCGA-FU-A3TX-01 1 71512631 71512631 G C PTGER3 Missense_Mutation p.I210M 0.43 deleterious(0) probably_damaging(1) TCGA-FU-A3TX-01 20 2621941 2621941 C G TMC2 Missense_Mutation p.Q889E 0.16 tolerated(0.08) benign(0.05) TCGA-FU-A3TX-01 20 43042336 43042336 G A HNF4A Missense_Mutation p.V130I 0.31 tolerated(0.07) benign(0.117) TCGA-FU-A3TX-01 21 45924730 45924730 C A TSPEAR Missense_Mutation p.D597Y 0.37 deleterious(0) probably_damaging(0.991) TCGA-FU-A3TX-01 22 30638497 30638497 G A LIF 3'UTR 0.52 TCGA-FU-A3TX-01 22 32633298 32633298 C T SLC5A4 Silent p.S199S 0.32 TCGA-FU-A3TX-01 22 42979836 42979836 G C POLDIP3 3'UTR 0.47 TCGA-FU-A3TX-01 22 50724315 50724315 G A PLXNB2 Nonsense_Mutation p.Q668* 0.31 TCGA-FU-A3TX-01 2 108487458 108487458 G T RGPD4 Nonsense_Mutation p.G1000* 0.45 TCGA-FU-A3TX-01 2 1667376 1667376 C T PXDN Splice_Site p.X523_splice 0.38 TCGA-FU-A3TX-01 2 183699467 183699467 A G FRZB 3'UTR 0.29 TCGA-FU-A3TX-01 2 203972328 203972328 C A NBEAL1 Intron 0.28 TCGA-FU-A3TX-01 2 39075446 39075446 T A DHX57 Missense_Mutation p.D710V 0.49 tolerated(0.11) benign(0.01) TCGA-FU-A3TX-01 2 58468462 58468462 G C FANCL 5'UTR 0.19 TCGA-FU-A3TX-01 2 72786617 72786617 G A EXOC6B Missense_Mutation p.P294S 0.50 deleterious(0) benign(0.227) TCGA-FU-A3TX-01 3 101525937 101525937 G C NXPE3 Missense_Mutation p.D297H 0.42 deleterious(0.05) probably_damaging(0.935) TCGA-FU-A3TX-01 3 130141595 130141595 G A COL6A5 Missense_Mutation p.G1690E 0.40 tolerated(1) benign(0.001) TCGA-FU-A3TX-01 3 151166190 151166190 G A IGSF10 Missense_Mutation p.R527W 0.36 deleterious(0) probably_damaging(1) TCGA-FU-A3TX-01 3 195269981 195269981 C T PPP1R2 5'UTR 0.54 TCGA-FU-A3TX-01 3 32915396 32915396 C T TRIM71 Silent p.Y313Y 0.42 TCGA-FU-A3TX-01 3 32933376 32933376 C T TRIM71 3'UTR 0.46 TCGA-FU-A3TX-01 3 49928930 49928930 G C MST1R Missense_Mutation p.L1146V 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-FU-A3TX-01 3 52962220 52962220 G A SFMBT1 Silent p.I345I 0.48 TCGA-FU-A3TX-01 4 149035255 149035255 G A NR3C2 Silent p.D933D 0.75 TCGA-FU-A3TX-01 4 149357186 149357186 G A NR3C2 Missense_Mutation p.P276L 0.61 deleterious_low_confidence(0.04) possibly_damaging(0.908) TCGA-FU-A3TX-01 4 80247017 80247017 G A NAA11 Silent p.N5N 0.41 TCGA-FU-A3TX-01 5 115249351 115249351 T C AP3S1 3'UTR 0.07 TCGA-FU-A3TX-01 5 131409528 131409528 G A CSF2 Silent p.Q4Q 0.57 TCGA-FU-A3TX-01 5 139006669 139006669 G A UBE2D2 3'UTR 0.34 TCGA-FU-A3TX-01 5 140176125 140176125 G A PCDHA2 Missense_Mutation p.E526K 0.03 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FU-A3TX-01 5 140209601 140209601 C G PCDHA6 Missense_Mutation p.S642C 0.17 deleterious_low_confidence(0) benign(0.18) TCGA-FU-A3TX-01 5 38477870 38477870 C T LIFR 3'UTR 0.20 TCGA-FU-A3TX-01 6 31975240 31975240 A G C4A 3'Flank 0.39 TCGA-FU-A3TX-01 6 33281007 33281007 G A TAPBP Silent p.I152I 0.53 TCGA-FU-A3TX-01 6 42036293 42036293 C T TAF8 Missense_Mutation p.S243L 0.25 tolerated(0.17) benign(0.004) TCGA-FU-A3TX-01 6 70854859 70854859 G T COL19A1 Missense_Mutation p.G577V 0.33 deleterious(0) probably_damaging(1) TCGA-FU-A3TX-01 7 43351605 43351605 G A HECW1 Missense_Mutation p.G91R 0.21 deleterious(0) probably_damaging(1) TCGA-FU-A3TX-01 8 103572954 103572954 G A ODF1 Missense_Mutation p.E199K 0.41 deleterious(0.01) probably_damaging(0.974) TCGA-FU-A3TX-01 8 143998518 143998518 C A CYP11B2 Missense_Mutation p.A118S 0.31 tolerated(0.05) possibly_damaging(0.612) TCGA-FU-A3TX-01 8 27296867 27296868 - C PTK2B Frame_Shift_Ins p.I597Hfs*2 0.26 TCGA-FU-A3TX-01 9 139348716 139348716 G A SEC16A Missense_Mutation p.P1974L 0.39 tolerated(0.12) probably_damaging(0.973) TCGA-FU-A3TX-01 9 35313966 35313966 G C UNC13B Missense_Mutation p.V383L 0.17 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-FU-A3TX-01 9 73240179 73240179 G A TRPM3 Silent p.G567G 0.47 TCGA-FU-A3TX-01 X 140996029 140996029 C G MAGEC1 Missense_Mutation p.P947A 0.49 deleterious(0.01) unknown(0) TCGA-FU-A3TX-01 X 144906690 144906690 T C SLITRK2 3'UTR 0.43 TCGA-FU-A3TX-01 X 154319066 154319066 G A BRCC3 Missense_Mutation p.R167Q 0.52 tolerated(0.24) benign(0.048) TCGA-FU-A3TX-01 X 53564617 53564617 G A HUWE1 Missense_Mutation p.R4013W 0.42 unknown(0) TCGA-FU-A3TX-01 X 53713248 53713248 C T HUWE1 5'Flank 0.27 TCGA-FU-A3TX-01 X 78217159 78217159 G T P2RY10 3'UTR 0.36 TCGA-FU-A3WB-01 10 26790038 26790038 C A APBB1IP Missense_Mutation p.Q151K 0.30 tolerated(0.46) benign(0.004) TCGA-FU-A3WB-01 10 68688038 68688038 G A LRRTM3 Missense_Mutation p.R455H 0.48 tolerated(0.65) benign(0) TCGA-FU-A3WB-01 11 101833080 101833080 G C KIAA1377 Missense_Mutation p.E438D 0.90 tolerated(0.24) possibly_damaging(0.574) TCGA-FU-A3WB-01 11 101833184 101833184 G C KIAA1377 Missense_Mutation p.R473T 0.83 tolerated(0.4) possibly_damaging(0.733) TCGA-FU-A3WB-01 11 101833426 101833426 G A KIAA1377 Missense_Mutation p.D554N 0.82 deleterious(0.01) probably_damaging(1) TCGA-FU-A3WB-01 11 101834545 101834545 G A KIAA1377 Missense_Mutation p.E927K 0.88 tolerated(0.57) benign(0.013) TCGA-FU-A3WB-01 11 114113003 114113003 G C ZBTB16 Missense_Mutation p.C523S 0.70 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A3WB-01 11 118533532 118533532 C T TREH Intron 0.86 TCGA-FU-A3WB-01 11 16760010 16760010 G A C11orf58 5'UTR 0.74 TCGA-FU-A3WB-01 11 35641435 35641435 C T FJX1 Silent p.L417L 0.57 TCGA-FU-A3WB-01 11 55540930 55540930 G A OR5D13 Missense_Mutation p.R6K 0.33 tolerated(0.64) benign(0.001) TCGA-FU-A3WB-01 11 63656387 63656387 G A MARK2 Intron 0.33 TCGA-FU-A3WB-01 11 64509578 64509578 G A RASGRP2 Missense_Mutation p.S27F 0.44 deleterious(0.03) possibly_damaging(0.637) TCGA-FU-A3WB-01 11 75278009 75278009 C T SERPINH1 Silent p.F205F 0.62 TCGA-FU-A3WB-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.55 deleterious(0) benign(0.361) TCGA-FU-A3WB-01 12 52883813 52883813 C A KRT6A Missense_Mutation p.D373Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-FU-A3WB-01 12 53689262 53689262 G A PFDN5 5'UTR 0.33 TCGA-FU-A3WB-01 12 53689722 53689722 G A PFDN5 Missense_Mutation p.E58K 0.37 tolerated(0.39) benign(0.016) TCGA-FU-A3WB-01 12 65264530 65264530 G A TBC1D30 Silent p.Q480Q 0.45 TCGA-FU-A3WB-01 12 977110 977110 C T WNK1 Intron 0.41 TCGA-FU-A3WB-01 13 92797125 92797125 C T GPC5 Missense_Mutation p.L482F 0.39 tolerated(0.71) benign(0.015) TCGA-FU-A3WB-01 14 101348185 101348185 C T RTL1 Missense_Mutation p.V981I 0.38 tolerated(0.52) benign(0.012) TCGA-FU-A3WB-01 14 103566619 103566619 G A EXOC3L4 Silent p.E21E 0.37 TCGA-FU-A3WB-01 14 20295947 20295947 C A OR4N2 Missense_Mutation p.L114I 0.20 tolerated(0.09) probably_damaging(0.998) TCGA-FU-A3WB-01 15 23890312 23890312 C A MAGEL2 Missense_Mutation p.A257S 0.49 tolerated(0.07) benign(0.079) TCGA-FU-A3WB-01 15 64669005 64669005 G C KIAA0101 Missense_Mutation p.S76C 0.52 tolerated(0.06) possibly_damaging(0.889) TCGA-FU-A3WB-01 16 13010542 13010542 C G SHISA9 Intron 0.48 TCGA-FU-A3WB-01 16 30972783 30972783 G A SETD1A Missense_Mutation p.A148T 0.38 probably_damaging(0.997) TCGA-FU-A3WB-01 16 31476046 31476046 C T ARMC5 Missense_Mutation p.R568C 0.36 tolerated(0.08) benign(0.036) TCGA-FU-A3WB-01 16 31766154 31766154 C G ZNF720 Intron 0.47 TCGA-FU-A3WB-01 16 334925 334925 C T PDIA2 Silent p.D196D 0.57 TCGA-FU-A3WB-01 16 3799671 3799671 C - CREBBP Frame_Shift_Del p.D1265Ifs*11 0.35 TCGA-FU-A3WB-01 16 58072243 58072243 C T MMP15 Missense_Mutation p.R129W 0.47 deleterious(0) probably_damaging(0.973) TCGA-FU-A3WB-01 16 88744885 88744885 C T SNAI3 Missense_Mutation p.E284K 0.39 tolerated(0.08) possibly_damaging(0.874) TCGA-FU-A3WB-01 17 4996720 4996720 C T ZFP3 3'UTR 0.41 TCGA-FU-A3WB-01 17 5312223 5312223 C A NUP88 Silent p.A229A 0.11 TCGA-FU-A3WB-01 18 2656258 2656258 C T SMCHD1 Nonsense_Mutation p.Q62* 0.40 TCGA-FU-A3WB-01 18 29175194 29175194 C T TTR Silent p.I104I 0.50 TCGA-FU-A3WB-01 18 2921538 2921538 C T LPIN2 Missense_Mutation p.R812H 0.55 deleterious(0) probably_damaging(1) TCGA-FU-A3WB-01 18 67727191 67727191 G A RTTN Missense_Mutation p.S1612F 0.40 deleterious(0.04) benign(0.249) TCGA-FU-A3WB-01 19 1785271 1785271 G C ATP8B3 Missense_Mutation p.T1140S 0.38 deleterious(0.01) probably_damaging(0.925) TCGA-FU-A3WB-01 19 3827625 3827625 C T ZFR2 Silent p.Q293Q 0.48 TCGA-FU-A3WB-01 19 41105464 41105464 T C LTBP4 Splice_Site p.X114_splice 0.47 TCGA-FU-A3WB-01 19 4844784 4844784 C T PLIN3 Missense_Mutation p.V286I 0.48 deleterious(0.04) benign(0.159) TCGA-FU-A3WB-01 19 50027862 50027862 C T FCGRT Missense_Mutation p.R234W 0.43 deleterious(0.03) probably_damaging(0.99) TCGA-FU-A3WB-01 19 50905324 50905324 G T POLD1 Missense_Mutation p.G178W 0.48 deleterious(0.01) probably_damaging(0.992) TCGA-FU-A3WB-01 1 104088907 104088907 G A RNPC3 Silent p.P415P 0.22 TCGA-FU-A3WB-01 1 114401660 114401660 A G PTPN22 Silent p.D79D 0.43 TCGA-FU-A3WB-01 1 166822524 166822524 G A POGK 3'UTR 0.39 TCGA-FU-A3WB-01 1 68151045 68151045 C G GADD45A 5'UTR 0.31 TCGA-FU-A3WB-01 20 3627801 3627801 T C ATRN 3'UTR 0.45 TCGA-FU-A3WB-01 20 3782721 3782721 G A CDC25B Missense_Mutation p.E358K 0.44 tolerated(0.15) benign(0.392) TCGA-FU-A3WB-01 22 23154663 23154663 G A IGLV3-10 Missense_Mutation p.E78K 0.52 deleterious(0.02) possibly_damaging(0.791) TCGA-FU-A3WB-01 22 35660934 35660934 C T HMGXB4 Missense_Mutation p.R185W 0.39 deleterious(0) probably_damaging(1) TCGA-FU-A3WB-01 22 36122624 36122624 C T APOL5 Missense_Mutation p.S170L 0.23 tolerated(0.1) possibly_damaging(0.463) TCGA-FU-A3WB-01 22 45802378 45802378 G A SMC1B Missense_Mutation p.A193V 0.53 deleterious(0) probably_damaging(0.949) TCGA-FU-A3WB-01 22 50555644 50555644 C T MOV10L1 Nonsense_Mutation p.R440* 0.56 TCGA-FU-A3WB-01 22 51117444 51117444 C T SHANK3 Intron 0.47 TCGA-FU-A3WB-01 2 137814044 137814044 C A THSD7B Missense_Mutation p.A65E 0.40 deleterious(0.02) possibly_damaging(0.765) TCGA-FU-A3WB-01 2 202002757 202002757 G A CFLAR Intron 0.73 TCGA-FU-A3WB-01 2 222291250 222291250 C T EPHA4 Missense_Mutation p.R927Q 0.79 tolerated(0.75) probably_damaging(0.968) TCGA-FU-A3WB-01 2 242812025 242812025 G A CXXC11 Silent p.L39L 0.75 TCGA-FU-A3WB-01 2 27803001 27803001 G A C2orf16 Missense_Mutation p.V1188I 0.40 tolerated(1) benign(0.017) TCGA-FU-A3WB-01 2 97368475 97368475 G A LMAN2L 3'Flank 0.68 TCGA-FU-A3WB-01 3 114069161 114069161 G A ZBTB20 Silent p.T588T 0.26 TCGA-FU-A3WB-01 3 130095415 130095415 C G COL6A5 Missense_Mutation p.P135A 0.33 deleterious(0) probably_damaging(0.999) TCGA-FU-A3WB-01 3 150459917 150459917 C T SIAH2 3'UTR 0.24 TCGA-FU-A3WB-01 3 16926832 16926832 G T PLCL2 5'UTR 0.36 TCGA-FU-A3WB-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-FU-A3WB-01 3 182597360 182597360 G A ATP11B Missense_Mutation p.E777K 0.27 tolerated(0.67) benign(0.053) TCGA-FU-A3WB-01 3 183145719 183145719 C G MCF2L2 Missense_Mutation p.R16P 0.21 deleterious(0.01) benign(0.425) TCGA-FU-A3WB-01 3 19974996 19974996 T G EFHB Missense_Mutation p.E172A 0.43 tolerated_low_confidence(0.13) benign(0.092) TCGA-FU-A3WB-01 3 36872496 36872496 C T TRANK1 Missense_Mutation p.E2816K 0.45 tolerated(0.13) benign(0.11) TCGA-FU-A3WB-01 4 57180814 57180814 G A KIAA1211 Silent p.P382P 0.44 TCGA-FU-A3WB-01 4 68692991 68692991 G A TMPRSS11D Nonsense_Mutation p.Q314* 0.48 TCGA-FU-A3WB-01 5 127593685 127593685 T G FBN2 3'Flank 0.45 TCGA-FU-A3WB-01 5 131289509 131289509 C A ACSL6 3'UTR 0.40 TCGA-FU-A3WB-01 5 140573047 140573047 G C PCDHB10 Missense_Mutation p.D308H 0.19 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-FU-A3WB-01 5 170738602 170738602 G C TLX3 Nonstop_Mutation p.*292Sext*80 0.34 TCGA-FU-A3WB-01 5 180218781 180218781 G A MGAT1 Silent p.F397F 0.40 TCGA-FU-A3WB-01 6 117881787 117881787 C T GOPC 3'UTR 0.47 TCGA-FU-A3WB-01 6 143074250 143074250 T C HIVEP2 Silent p.L2445L 0.38 TCGA-FU-A3WB-01 6 24456815 24456815 C T GPLD1 Missense_Mutation p.M353I 0.50 tolerated(0.7) benign(0.002) TCGA-FU-A3WB-01 6 28971356 28971356 C T ZNF311 Missense_Mutation p.E9K 0.33 tolerated(0.12) benign(0.006) TCGA-FU-A3WB-01 6 30128238 30128238 C T TRIM10 Missense_Mutation p.R133H 0.50 deleterious(0.04) probably_damaging(0.976) TCGA-FU-A3WB-01 6 43753920 43753920 G A VEGFA 3'Flank 0.27 TCGA-FU-A3WB-01 6 89871595 89871596 - TACT PM20D2 Frame_Shift_Ins p.E383Hfs*2 0.38 TCGA-FU-A3WB-01 6 99849006 99849006 G A PNISR Missense_Mutation p.R610W 0.45 tolerated_low_confidence(0.08) possibly_damaging(0.835) TCGA-FU-A3WB-01 7 107338524 107338524 G T SLC26A4 Missense_Mutation p.D528Y 0.43 deleterious(0) probably_damaging(0.996) TCGA-FU-A3WB-01 7 110765255 110765255 C G LRRN3 3'UTR 0.33 TCGA-FU-A3WB-01 7 1732937 1732937 C T AC074389.6 3'UTR 0.43 TCGA-FU-A3WB-01 7 43508528 43508528 C T HECW1 Nonsense_Mutation p.R975* 0.53 TCGA-FU-A3WB-01 7 90896358 90896358 C T FZD1 3'UTR 0.46 TCGA-FU-A3WB-01 8 146016665 146016665 C A RPL8 Missense_Mutation p.V166F 0.29 deleterious(0) probably_damaging(0.977) TCGA-FU-A3WB-01 8 70744526 70744526 C T SLCO5A1 Missense_Mutation p.R128H 0.44 deleterious(0) probably_damaging(0.993) TCGA-FU-A3WB-01 X 101858743 101858743 C G ARMCX5 Silent p.L558L 0.37 TCGA-FU-A3WB-01 X 102471563 102471563 G C BEX4 3'UTR 0.43 TCGA-FU-A3WB-01 X 118223458 118223458 C T KIAA1210 Missense_Mutation p.A579T 0.45 deleterious(0.01) benign(0.011) TCGA-FU-A3WB-01 X 127185658 127185658 G A ACTRT1 Silent p.H176H 0.42 TCGA-FU-A3WB-01 X 128582408 128582408 G A SMARCA1 Missense_Mutation p.R1015C 0.57 deleterious(0) probably_damaging(1) TCGA-FU-A3WB-01 X 153741234 153741234 C T FAM3A Missense_Mutation p.V14I 0.42 tolerated(0.97) benign(0.002) TCGA-FU-A3WB-01 X 47065749 47065749 C A UBA1 Missense_Mutation p.T615K 0.38 deleterious(0) probably_damaging(0.999) TCGA-FU-A3WB-01 X 70339533 70339533 C G MED12 Intron 0.50 TCGA-FU-A3YQ-01 10 105906095 105906095 C T WDR96 Missense_Mutation p.E1261K 0.19 tolerated(0.13) benign(0.017) TCGA-FU-A3YQ-01 11 111385727 111385727 G C C11orf88 Missense_Mutation p.R73T 0.06 tolerated(0.6) benign(0.008) TCGA-FU-A3YQ-01 11 124564303 124564306 AAAT - SPA17 Frame_Shift_Del p.N140Vfs*24 0.17 TCGA-FU-A3YQ-01 11 125825510 125825510 G A CDON 3'Flank 0.13 TCGA-FU-A3YQ-01 11 12696016 12696016 C G TEAD1 5'UTR 0.17 TCGA-FU-A3YQ-01 11 2320718 2320718 G A C11orf21 Missense_Mutation p.R169W 0.25 tolerated_low_confidence(0.11) possibly_damaging(0.835) TCGA-FU-A3YQ-01 11 2904855 2904855 T C CDKN1C 3'UTR 0.21 TCGA-FU-A3YQ-01 11 55872653 55872653 G A OR8H2 Silent p.G45G 0.12 TCGA-FU-A3YQ-01 11 65271372 65271372 G A MALAT1 RNA 0.22 TCGA-FU-A3YQ-01 11 65271994 65271994 G C MALAT1 RNA 0.14 TCGA-FU-A3YQ-01 11 65272527 65272527 G A MALAT1 RNA 0.13 TCGA-FU-A3YQ-01 11 6635086 6635086 G C TPP1 3'UTR 0.15 TCGA-FU-A3YQ-01 11 67232007 67232007 C T TMEM134 3'UTR 0.14 TCGA-FU-A3YQ-01 11 88911211 88911211 G C TYR Silent p.L30L 0.18 TCGA-FU-A3YQ-01 12 110930923 110930923 C G VPS29 Missense_Mutation p.Q107H 0.37 deleterious(0.05) possibly_damaging(0.876) TCGA-FU-A3YQ-01 12 11339326 11339326 G A TAS2R42 Missense_Mutation p.S73L 0.19 deleterious(0.04) benign(0.009) TCGA-FU-A3YQ-01 12 27058419 27058419 C T ASUN 3'UTR 0.17 TCGA-FU-A3YQ-01 12 27089604 27089604 C A ASUN Missense_Mutation p.A45S 0.18 deleterious(0.03) possibly_damaging(0.823) TCGA-FU-A3YQ-01 12 49521749 49521749 C G TUBA1B Missense_Mutation p.E450Q 0.19 deleterious_low_confidence(0.05) unknown(0) TCGA-FU-A3YQ-01 12 99478734 99478734 C G ANKS1B Missense_Mutation p.R865T 0.17 deleterious(0) possibly_damaging(0.821) TCGA-FU-A3YQ-01 13 25915910 25915910 G C NUPL1 3'UTR 0.12 TCGA-FU-A3YQ-01 13 28562708 28562708 C G URAD Missense_Mutation p.E23Q 0.13 deleterious(0) probably_damaging(0.994) TCGA-FU-A3YQ-01 13 48611791 48611791 C T NUDT15 5'UTR 0.36 TCGA-FU-A3YQ-01 13 48611798 48611798 C T NUDT15 5'UTR 0.42 TCGA-FU-A3YQ-01 13 88329623 88329623 G A SLITRK5 Silent p.S660S 0.20 TCGA-FU-A3YQ-01 14 106174793 106174793 C A IGHA1 Silent p.L70L 0.17 TCGA-FU-A3YQ-01 14 55819703 55819703 A T FBXO34 3'UTR 0.20 TCGA-FU-A3YQ-01 15 32972022 32972022 C T SCG5 Silent p.I94I 0.18 TCGA-FU-A3YQ-01 15 42147508 42147508 C T SPTBN5 Missense_Mutation p.E3113K 0.21 probably_damaging(0.999) TCGA-FU-A3YQ-01 15 42982596 42982596 C G STARD9 Silent p.L2940L 0.19 TCGA-FU-A3YQ-01 15 63433478 63433478 G C LACTB Splice_Site p.X373_splice 0.16 TCGA-FU-A3YQ-01 15 64977265 64977265 C T ZNF609 3'UTR 0.20 TCGA-FU-A3YQ-01 15 77329538 77329538 C T PSTPIP1 3'UTR 0.17 TCGA-FU-A3YQ-01 15 77777921 77777921 C G HMG20A 3'UTR 0.23 TCGA-FU-A3YQ-01 15 89070930 89070930 C T DET1 Missense_Mutation p.E402K 0.12 deleterious(0) probably_damaging(0.989) TCGA-FU-A3YQ-01 15 91545319 91545319 C T VPS33B Missense_Mutation p.E456K 0.24 deleterious(0.04) benign(0.397) TCGA-FU-A3YQ-01 16 1268999 1268999 G A CACNA1H Missense_Mutation p.A1973T 0.14 tolerated(0.21) benign(0.058) TCGA-FU-A3YQ-01 16 15703466 15703466 G A KIAA0430 Missense_Mutation p.H1290Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-FU-A3YQ-01 16 15703574 15703574 G C KIAA0430 Missense_Mutation p.Q1254E 0.13 tolerated(1) probably_damaging(0.992) TCGA-FU-A3YQ-01 16 15706497 15706497 G C KIAA0430 Missense_Mutation p.H1131D 0.14 deleterious(0) probably_damaging(0.999) TCGA-FU-A3YQ-01 16 2263220 2263220 C T PGP 3'UTR 0.27 TCGA-FU-A3YQ-01 16 2263560 2263560 C T PGP 3'UTR 0.15 TCGA-FU-A3YQ-01 16 28187269 28187269 G A XPO6 Missense_Mutation p.R119C 0.14 deleterious(0) probably_damaging(1) TCGA-FU-A3YQ-01 16 28997041 28997041 C T LAT Silent p.Y72Y 0.28 TCGA-FU-A3YQ-01 16 70765414 70765414 C T VAC14 Missense_Mutation p.G549S 0.17 tolerated(0.08) benign(0.371) TCGA-FU-A3YQ-01 16 84203864 84203864 C T DNAAF1 Missense_Mutation p.P477L 0.25 tolerated(0.43) probably_damaging(0.998) TCGA-FU-A3YQ-01 16 85111196 85111196 G A KIAA0513 Missense_Mutation p.G247E 0.15 deleterious(0) possibly_damaging(0.887) TCGA-FU-A3YQ-01 17 11166735 11166735 G A SHISA6 Missense_Mutation p.E231K 0.15 deleterious(0.01) probably_damaging(0.969) TCGA-FU-A3YQ-01 17 19685287 19685287 C G ULK2 Missense_Mutation p.E852Q 0.14 tolerated(0.1) benign(0.032) TCGA-FU-A3YQ-01 17 27936291 27936291 G C ANKRD13B Missense_Mutation p.E251D 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A3YQ-01 17 47295176 47295176 G A ABI3 Missense_Mutation p.G121S 0.19 tolerated(0.78) benign(0.145) TCGA-FU-A3YQ-01 17 53046062 53046062 G A COX11 5'UTR 0.16 TCGA-FU-A3YQ-01 18 25570153 25570153 C A CDH2 Missense_Mutation p.K502N 0.07 deleterious(0.01) probably_damaging(0.974) TCGA-FU-A3YQ-01 18 33750155 33750155 C T ELP2 Nonsense_Mutation p.Q801* 0.18 TCGA-FU-A3YQ-01 18 78005253 78005253 C G PARD6G 5'UTR 0.12 TCGA-FU-A3YQ-01 19 1581162 1581162 C T MBD3 Silent p.K202K 0.16 TCGA-FU-A3YQ-01 19 17312782 17312782 C G MYO9B Missense_Mutation p.I1537M 0.14 tolerated(0.09) possibly_damaging(0.648) TCGA-FU-A3YQ-01 19 30018176 30018176 G A VSTM2B Missense_Mutation p.M47I 0.25 deleterious(0) probably_damaging(0.968) TCGA-FU-A3YQ-01 19 3453781 3453781 C G NFIC Silent p.L430L 0.19 TCGA-FU-A3YQ-01 19 46056715 46056715 G T OPA3 Intron 0.19 TCGA-FU-A3YQ-01 19 47548507 47548507 G A NPAS1 Silent p.Q457Q 0.22 TCGA-FU-A3YQ-01 19 59081860 59081860 G A MZF1 Missense_Mutation p.S144L 0.14 tolerated(0.38) probably_damaging(0.966) TCGA-FU-A3YQ-01 1 117532755 117532755 A C PTGFRN 3'UTR 0.11 TCGA-FU-A3YQ-01 1 156314403 156314403 C T TSACC Missense_Mutation p.L23F 0.08 tolerated_low_confidence(0.1) probably_damaging(0.986) TCGA-FU-A3YQ-01 1 179095626 179095626 G A ABL2 Silent p.I191I 0.13 TCGA-FU-A3YQ-01 1 179961214 179961214 G A CEP350 Missense_Mutation p.D85N 0.11 benign(0.067) TCGA-FU-A3YQ-01 1 25228968 25228968 G A RUNX3 Missense_Mutation p.P312L 0.17 deleterious(0.04) benign(0.007) TCGA-FU-A3YQ-01 1 38327976 38327976 G T INPP5B 3'UTR 0.19 TCGA-FU-A3YQ-01 1 44086197 44086197 G C PTPRF Missense_Mutation p.E1771Q 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-FU-A3YQ-01 1 63998424 63998424 C T EFCAB7 Silent p.I161I 0.21 TCGA-FU-A3YQ-01 20 33437774 33437774 C A GGT7 Silent p.L605L 0.19 TCGA-FU-A3YQ-01 20 34079140 34079140 C T CEP250 Nonsense_Mutation p.Q953* 0.16 TCGA-FU-A3YQ-01 21 34955924 34955924 G A DONSON Silent p.C278C 0.09 TCGA-FU-A3YQ-01 22 24121514 24121514 C T MMP11 Silent p.P83P 0.19 TCGA-FU-A3YQ-01 22 30688730 30688730 C T TBC1D10A Silent p.L394L 0.14 TCGA-FU-A3YQ-01 22 32242914 32242914 C A DEPDC5 Nonsense_Mutation p.S1030* 0.19 TCGA-FU-A3YQ-01 22 39709277 39709277 C G RPL3 Missense_Mutation p.K362N 0.21 tolerated(0.2) benign(0.005) TCGA-FU-A3YQ-01 22 40080571 40080571 G A CACNA1I Intron 0.15 TCGA-FU-A3YQ-01 2 161143497 161143497 C G RBMS1 Missense_Mutation p.E247Q 0.13 deleterious(0.04) benign(0.391) TCGA-FU-A3YQ-01 2 173832141 173832141 G A RAPGEF4 Missense_Mutation p.D325N 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-FU-A3YQ-01 2 201724850 201724850 C G CLK1 Missense_Mutation p.R202T 0.13 deleterious(0.01) possibly_damaging(0.735) TCGA-FU-A3YQ-01 2 214354699 214354699 C T SPAG16 Missense_Mutation p.P319S 0.25 deleterious(0.04) possibly_damaging(0.746) TCGA-FU-A3YQ-01 3 101383876 101383876 G A ZBTB11 Nonsense_Mutation p.R519* 0.18 TCGA-FU-A3YQ-01 3 129369977 129369977 C G TMCC1 3'UTR 0.12 TCGA-FU-A3YQ-01 3 164709259 164709259 C G SI Missense_Mutation p.D1664H 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-FU-A3YQ-01 3 180320014 180320014 C G TTC14 5'UTR 0.16 TCGA-FU-A3YQ-01 3 197616472 197616472 C T IQCG Silent p.K437K 0.09 TCGA-FU-A3YQ-01 3 49054257 49054257 C T DALRD3 Silent p.V317V 0.21 TCGA-FU-A3YQ-01 3 55504018 55504018 G A WNT5A 3'UTR 0.26 TCGA-FU-A3YQ-01 4 110427532 110427532 C T SEC24B Missense_Mutation p.L513F 0.17 deleterious(0.03) possibly_damaging(0.638) TCGA-FU-A3YQ-01 4 144481154 144481154 C T SMARCA5 3'Flank 0.21 TCGA-FU-A3YQ-01 4 2307163 2307163 C A ZFYVE28 Nonsense_Mutation p.G302* 0.12 TCGA-FU-A3YQ-01 4 57237717 57237717 G A AASDH Missense_Mutation p.S254L 0.11 deleterious(0) benign(0.292) TCGA-FU-A3YQ-01 5 102365287 102365288 TA - PAM 3'Flank 0.13 TCGA-FU-A3YQ-01 5 140574788 140574788 C G PCDHB10 3'UTR 0.15 TCGA-FU-A3YQ-01 5 167849048 167849048 G A WWC1 Missense_Mutation p.R407K 0.19 tolerated(0.4) benign(0.031) TCGA-FU-A3YQ-01 5 179529108 179529108 C G RASGEF1C Missense_Mutation p.E447Q 0.09 deleterious(0) benign(0.421) TCGA-FU-A3YQ-01 5 33891856 33891856 G A ADAMTS12 Missense_Mutation p.R36C 0.10 tolerated_low_confidence(0.17) benign(0.001) TCGA-FU-A3YQ-01 5 76248861 76248861 G T CRHBP 5'UTR 0.18 TCGA-FU-A3YQ-01 5 82789643 82789643 G C VCAN Missense_Mutation p.R214T 0.10 deleterious(0) probably_damaging(0.999) TCGA-FU-A3YQ-01 6 26017563 26017563 G A HIST1H1A Missense_Mutation p.T133M 0.15 tolerated(0.08) unknown(0) TCGA-FU-A3YQ-01 6 32943932 32943932 G A BRD2 Missense_Mutation p.G199E 0.27 tolerated(0.13) benign(0.444) TCGA-FU-A3YQ-01 6 33283917 33283917 C T ZBTB22 Silent p.L259L 0.14 TCGA-FU-A3YQ-01 6 74533375 74533375 C T CD109 3'UTR 0.13 TCGA-FU-A3YQ-01 6 84304150 84304150 C T SNAP91 Missense_Mutation p.A459T 0.10 tolerated(0.17) unknown(0) TCGA-FU-A3YQ-01 7 108142958 108142958 G T PNPLA8 Silent p.L445L 0.18 TCGA-FU-A3YQ-01 7 119913795 119913795 A C KCND2 5'UTR 0.15 TCGA-FU-A3YQ-01 7 12419153 12419153 G C VWDE Missense_Mutation p.H277D 0.23 tolerated(1) benign(0.001) TCGA-FU-A3YQ-01 7 128477264 128477264 G A FLNC Missense_Mutation p.A218T 0.17 deleterious(0.01) probably_damaging(1) TCGA-FU-A3YQ-01 7 142247175 142247175 G A TRBV7-3 Missense_Mutation p.S94F 0.21 TCGA-FU-A3YQ-01 7 1855517 1855517 C T MAD1L1 3'UTR 0.20 TCGA-FU-A3YQ-01 7 99668742 99668742 G C ZNF3 3'UTR 0.11 TCGA-FU-A3YQ-01 8 101931165 101931165 G A YWHAZ 3'UTR 0.20 TCGA-FU-A3YQ-01 8 101931181 101931181 G C YWHAZ 3'UTR 0.21 TCGA-FU-A3YQ-01 8 11142394 11142394 G A MTMR9 5'UTR 0.16 TCGA-FU-A3YQ-01 8 126011819 126011819 G C SQLE Missense_Mutation p.Q58H 0.19 tolerated_low_confidence(0.49) benign(0.002) TCGA-FU-A3YQ-01 8 144654251 144654251 G A MROH6 Silent p.L133L 0.08 TCGA-FU-A3YQ-01 8 28997699 28997699 G A KIF13B Missense_Mutation p.R832W 0.27 deleterious(0) possibly_damaging(0.544) TCGA-FU-A3YQ-01 8 2967788 2967788 G A CSMD1 Missense_Mutation p.P2167L 0.08 probably_damaging(1) TCGA-FU-A3YQ-01 8 48855777 48855777 G C PRKDC Missense_Mutation p.L320V 0.13 possibly_damaging(0.603) TCGA-FU-A3YQ-01 8 55542978 55542978 C T RP1 3'UTR 0.27 TCGA-FU-A3YQ-01 8 95952425 95952425 C T TP53INP1 Missense_Mutation p.E46K 0.21 tolerated(0.12) benign(0.068) TCGA-FU-A3YQ-01 9 103339537 103339537 G C TMEFF1 3'UTR 0.11 TCGA-FU-A3YQ-01 9 125391128 125391128 G A OR1B1 Silent p.A229A 0.29 TCGA-FU-A3YQ-01 9 132482886 132482886 G C PRRX2 Missense_Mutation p.Q153H 0.33 deleterious(0) probably_damaging(0.999) TCGA-FU-A3YQ-01 9 139912263 139912263 C T ABCA2 Silent p.A729A 0.36 TCGA-FU-A3YQ-01 9 14784445 14784445 G A FREM1 Silent p.F1455F 0.23 TCGA-FU-A3YQ-01 X 44969322 44969327 AGGTGG - KDM6A Splice_Site p.X1336_splice 0.18 TCGA-FU-A40J-01 10 124800817 124800817 C T ACADSB Silent p.L201L 0.39 TCGA-FU-A40J-01 10 127724832 127724832 C T ADAM12 Silent p.L807L 0.27 TCGA-FU-A40J-01 10 42831831 42831831 A G RP11-313J2.1 RNA 0.10 TCGA-FU-A40J-01 10 50944452 50944452 C T OGDHL Missense_Mutation p.R902Q 0.13 deleterious(0) probably_damaging(0.994) TCGA-FU-A40J-01 10 72299353 72299353 G A PALD1 Silent p.L581L 0.07 TCGA-FU-A40J-01 10 99995795 99995800 GCAAAG CCAAA R3HCC1L Frame_Shift_Del p.A715Pfs*11 0.24 TCGA-FU-A40J-01 11 107462600 107462600 G A AP000889.3 Silent p.G39G 0.13 TCGA-FU-A40J-01 11 107879918 107879918 G A CUL5 5'UTR 0.24 TCGA-FU-A40J-01 11 111596302 111596302 C G SIK2 3'UTR 0.12 TCGA-FU-A40J-01 11 112087020 112087020 G C BCO2 Silent p.G531G 0.19 TCGA-FU-A40J-01 11 121420766 121420766 C T SORL1 Missense_Mutation p.P717S 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-FU-A40J-01 11 126133385 126133385 G A SRPR 3'UTR 0.12 TCGA-FU-A40J-01 11 133816074 133816074 G A IGSF9B Silent p.I48I 0.21 TCGA-FU-A40J-01 11 17098993 17098993 G C RPS13 Missense_Mutation p.R19G 0.15 deleterious(0.02) possibly_damaging(0.793) TCGA-FU-A40J-01 11 19197384 19197384 G A ZDHHC13 Silent p.Q582Q 0.14 TCGA-FU-A40J-01 11 3239921 3239921 G C MRGPRG Missense_Mutation p.I41M 0.19 deleterious(0.04) benign(0.166) TCGA-FU-A40J-01 11 33564473 33564473 A G KIAA1549L Missense_Mutation p.E158G 0.31 tolerated_low_confidence(0.06) benign(0.04) TCGA-FU-A40J-01 11 35275303 35275303 C T SLC1A2 3'UTR 0.30 TCGA-FU-A40J-01 11 47490203 47490203 C T CELF1 3'Flank 0.16 TCGA-FU-A40J-01 11 5566286 5566286 G A OR52H1 Silent p.I156I 0.18 TCGA-FU-A40J-01 11 57584522 57584522 C T CTNND1 3'UTR 0.18 TCGA-FU-A40J-01 11 6024247 6024247 G A OR56A4 Silent p.V44V 0.29 TCGA-FU-A40J-01 11 61283257 61283257 C A SYT7 3'Flank 0.32 TCGA-FU-A40J-01 11 6129931 6129931 A G OR56B4 Missense_Mutation p.Q308R 0.25 tolerated(0.36) benign(0) TCGA-FU-A40J-01 11 66291252 66291252 G A BBS1 Missense_Mutation p.E337K 0.27 tolerated(0.06) possibly_damaging(0.765) TCGA-FU-A40J-01 11 73627672 73627672 G A PAAF1 Missense_Mutation p.G301E 0.12 deleterious(0) probably_damaging(0.984) TCGA-FU-A40J-01 11 74203377 74203377 C T LIPT2 Missense_Mutation p.G167S 0.15 deleterious(0) probably_damaging(1) TCGA-FU-A40J-01 11 74413902 74413902 G A CHRDL2 Missense_Mutation p.R353C 0.22 deleterious(0.01) probably_damaging(0.975) TCGA-FU-A40J-01 12 107914403 107914403 C T BTBD11 Silent p.I425I 0.24 TCGA-FU-A40J-01 12 131623878 131623878 C A GPR133 3'UTR 0.65 TCGA-FU-A40J-01 12 48179194 48179194 G A AC004466.1 Missense_Mutation p.R93K 0.19 unknown(0) TCGA-FU-A40J-01 12 53045652 53045652 C T KRT2 Missense_Mutation p.R92K 0.29 tolerated(0.19) unknown(0) TCGA-FU-A40J-01 12 53694044 53694044 G C C12orf10 Missense_Mutation p.Q109H 0.26 deleterious(0) probably_damaging(0.984) TCGA-FU-A40J-01 12 53803143 53803143 C T SP1 Intron 0.28 TCGA-FU-A40J-01 12 53900173 53900173 C T TARBP2 3'UTR 0.38 TCGA-FU-A40J-01 12 56826872 56826872 C G TIMELESS Missense_Mutation p.E157Q 0.12 deleterious(0) probably_damaging(0.987) TCGA-FU-A40J-01 12 57485047 57485047 G A NAB2 Missense_Mutation p.A75T 0.29 deleterious(0) probably_damaging(0.994) TCGA-FU-A40J-01 12 7052786 7052786 G A C12orf57 5'Flank 0.28 TCGA-FU-A40J-01 12 95912058 95912058 A G USP44 Missense_Mutation p.Y671H 0.53 deleterious(0) probably_damaging(1) TCGA-FU-A40J-01 13 23914001 23914001 C T SACS Silent p.K1338K 0.37 TCGA-FU-A40J-01 13 37605926 37605926 C G SUPT20H Missense_Mutation p.E272Q 0.21 deleterious(0.04) benign(0.285) TCGA-FU-A40J-01 13 41834684 41834684 G T MTRF1 Nonsense_Mutation p.Y120* 0.20 TCGA-FU-A40J-01 13 51599571 51599571 G A RNA5SP29 3'Flank 0.34 TCGA-FU-A40J-01 13 61987233 61987233 A C PCDH20 Silent p.A333A 0.07 TCGA-FU-A40J-01 14 105685528 105685528 C T BRF1 Silent p.L473L 0.11 TCGA-FU-A40J-01 14 23842135 23842135 C G IL25 5'UTR 0.09 TCGA-FU-A40J-01 14 39514438 39514438 G C SEC23A Missense_Mutation p.Q610E 0.39 tolerated(1) benign(0.003) TCGA-FU-A40J-01 14 50550713 50550713 C T C14orf183 Missense_Mutation p.E211K 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.486) TCGA-FU-A40J-01 14 52509538 52509538 G C NID2 Missense_Mutation p.S514C 0.36 deleterious(0.01) probably_damaging(0.928) TCGA-FU-A40J-01 14 59953442 59953442 C G JKAMP Missense_Mutation p.Q6E 0.26 tolerated(0.33) benign(0.003) TCGA-FU-A40J-01 14 73945456 73945456 T C HEATR4 Missense_Mutation p.D979G 0.21 deleterious_low_confidence(0.03) benign(0.251) TCGA-FU-A40J-01 14 97299805 97299805 G A VRK1 Intron 0.15 TCGA-FU-A40J-01 15 38616984 38616984 G A SPRED1 Missense_Mutation p.E133K 0.27 deleterious(0.03) benign(0.05) TCGA-FU-A40J-01 15 40589076 40589076 C T PLCB2 Missense_Mutation p.D453N 0.19 deleterious(0.01) benign(0.356) TCGA-FU-A40J-01 15 43620819 43620819 C G LCMT2 Missense_Mutation p.L623F 0.38 tolerated(0.41) benign(0.009) TCGA-FU-A40J-01 15 74912445 74912445 A G CLK3 Missense_Mutation p.Y231C 0.22 tolerated(0.29) benign(0) TCGA-FU-A40J-01 16 1292149 1292149 G A TPSAB1 Missense_Mutation p.E246K 0.22 tolerated(0.6) benign(0.028) TCGA-FU-A40J-01 16 15069052 15069052 C T PDXDC1 5'UTR 0.09 TCGA-FU-A40J-01 16 19548708 19548708 A T CCP110 Missense_Mutation p.N573Y 0.29 deleterious(0) possibly_damaging(0.827) TCGA-FU-A40J-01 16 2581197 2581197 C T CEMP1 5'UTR 0.11 TCGA-FU-A40J-01 16 2815031 2815031 C G SRRM2 Nonsense_Mutation p.S1501* 0.15 TCGA-FU-A40J-01 16 31496157 31496157 C T SLC5A2 Silent p.F72F 0.17 TCGA-FU-A40J-01 16 4310593 4310593 G A TFAP4 Missense_Mutation p.R177C 0.06 deleterious(0.01) possibly_damaging(0.478) TCGA-FU-A40J-01 16 4405096 4405096 G A CORO7 3'UTR 0.25 TCGA-FU-A40J-01 16 48162555 48162555 C T ABCC12 Missense_Mutation p.E444K 0.21 tolerated(0.18) benign(0.004) TCGA-FU-A40J-01 16 67660614 67660614 G C CTCF Missense_Mutation p.R505T 0.20 tolerated(0.11) benign(0.262) TCGA-FU-A40J-01 16 70969968 70969968 C T HYDIN Missense_Mutation p.E2349K 0.25 probably_damaging(0.953) TCGA-FU-A40J-01 16 71765672 71765672 G C AP1G1 3'Flank 0.19 TCGA-FU-A40J-01 16 72822199 72822199 C T ZFHX3 Missense_Mutation p.A3326T 0.10 unknown(0) TCGA-FU-A40J-01 16 87364921 87364921 G A FBXO31 Silent p.L531L 0.27 TCGA-FU-A40J-01 17 10428320 10428320 C T MYH2 Silent p.K1575K 0.14 TCGA-FU-A40J-01 17 10532970 10532970 C T MYH3 Missense_Mutation p.A1914T 0.12 deleterious(0) probably_damaging(0.994) TCGA-FU-A40J-01 17 2222189 2222189 G A SRR Missense_Mutation p.G122E 0.24 deleterious(0) probably_damaging(0.998) TCGA-FU-A40J-01 17 26955504 26955504 C T KIAA0100 Nonsense_Mutation p.W1458* 0.21 TCGA-FU-A40J-01 17 27308731 27308731 C T SEZ6 Missense_Mutation p.A128T 0.15 tolerated_low_confidence(0.3) benign(0.003) TCGA-FU-A40J-01 17 37880261 37880261 G C ERBB2 Missense_Mutation p.D769H 0.24 deleterious(0) probably_damaging(1) TCGA-FU-A40J-01 17 38121988 38121988 C A GSDMA Missense_Mutation p.N16K 0.22 tolerated(0.07) probably_damaging(0.99) TCGA-FU-A40J-01 17 41165087 41165087 C T IFI35 Silent p.I48I 0.15 TCGA-FU-A40J-01 17 41165321 41165321 C G IFI35 Missense_Mutation p.I102M 0.25 deleterious(0) possibly_damaging(0.851) TCGA-FU-A40J-01 17 41582013 41582013 G A DHX8 Silent p.A516A 0.22 TCGA-FU-A40J-01 17 41622708 41622708 C T ETV4 Missense_Mutation p.E30K 0.18 tolerated(0.71) benign(0.179) TCGA-FU-A40J-01 17 46687942 46687942 C T HOXB7 Silent p.Q113Q 0.11 TCGA-FU-A40J-01 17 57915729 57915729 C T VMP1 Missense_Mutation p.H350Y 0.14 deleterious(0) probably_damaging(0.953) TCGA-FU-A40J-01 17 63052591 63052591 C A GNA13 Nonsense_Mutation p.E41* 0.20 TCGA-FU-A40J-01 17 65944377 65944377 G A BPTF Silent p.L2627L 0.36 TCGA-FU-A40J-01 17 7211740 7211740 G C EIF5A Intron 0.27 TCGA-FU-A40J-01 17 7211758 7211758 G C EIF5A Intron 0.20 TCGA-FU-A40J-01 17 73045417 73045417 G A KCTD2 Missense_Mutation p.E148K 0.21 deleterious(0.04) benign(0.298) TCGA-FU-A40J-01 17 73239158 73239158 C T GGA3 Missense_Mutation p.E172K 0.12 deleterious(0) probably_damaging(0.99) TCGA-FU-A40J-01 17 78333939 78333939 C G RNF213 Missense_Mutation p.F3711L 0.12 probably_damaging(0.997) TCGA-FU-A40J-01 17 79092188 79092188 G C AATK 3'UTR 0.12 TCGA-FU-A40J-01 17 7909952 7909952 G A GUCY2D Missense_Mutation p.R433Q 0.20 deleterious(0.04) benign(0.043) TCGA-FU-A40J-01 17 79268747 79268747 G A SLC38A10 5'UTR 0.16 TCGA-FU-A40J-01 17 8439105 8439105 C T MYH10 Missense_Mutation p.D584N 0.10 probably_damaging(0.998) TCGA-FU-A40J-01 18 24495927 24495927 G A CHST9 3'UTR 0.28 TCGA-FU-A40J-01 18 31673526 31673526 C G NOL4 Missense_Mutation p.M225I 0.07 deleterious(0.02) benign(0.019) TCGA-FU-A40J-01 18 42532180 42532180 G A SETBP1 Missense_Mutation p.E959K 0.22 deleterious(0) probably_damaging(0.994) TCGA-FU-A40J-01 18 55024435 55024435 A C ST8SIA3 Missense_Mutation p.Q198H 0.34 benign(0.002) TCGA-FU-A40J-01 18 677389 677389 C G ENOSF1 Silent p.L375L 0.20 TCGA-FU-A40J-01 18 72998082 72998082 C T TSHZ1 Silent p.F195F 0.31 TCGA-FU-A40J-01 18 76754968 76754968 G C SALL3 Missense_Mutation p.E993Q 0.18 tolerated(0.56) benign(0.133) TCGA-FU-A40J-01 18 77119438 77119438 G A ATP9B Silent p.P996P 0.20 TCGA-FU-A40J-01 19 11216264 11216264 G A LDLR Missense_Mutation p.E228K 0.12 deleterious(0) probably_damaging(0.998) TCGA-FU-A40J-01 19 12868679 12868679 G A BEST2 Missense_Mutation p.E440K 0.30 tolerated(0.17) benign(0.001) TCGA-FU-A40J-01 19 1422349 1422349 C T DAZAP1 Silent p.V139V 0.13 TCGA-FU-A40J-01 19 14938895 14938895 G A OR7A5 Silent p.S53S 0.17 TCGA-FU-A40J-01 19 18121164 18121164 G C ARRDC2 Missense_Mutation p.E337Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-FU-A40J-01 19 18121476 18121476 G A ARRDC2 Missense_Mutation p.E370K 0.17 tolerated(0.32) benign(0.26) TCGA-FU-A40J-01 19 18391439 18391439 G A JUND Missense_Mutation p.R286C 0.22 deleterious(0) probably_damaging(1) TCGA-FU-A40J-01 19 20808330 20808330 A T ZNF626 Missense_Mutation p.I118K 0.24 tolerated(1) benign(0) TCGA-FU-A40J-01 19 22942361 22942361 C A ZNF99 Missense_Mutation p.C117F 0.15 tolerated(0.09) benign(0.309) TCGA-FU-A40J-01 19 3282169 3282169 C G CELF5 Missense_Mutation p.L266V 0.21 deleterious(0.02) benign(0) TCGA-FU-A40J-01 19 37413710 37413710 T G ZNF568 Missense_Mutation p.V13G 0.10 deleterious_low_confidence(0.03) benign(0.004) TCGA-FU-A40J-01 19 39002929 39002929 G A RYR1 Missense_Mutation p.R3093H 0.11 benign(0.094) TCGA-FU-A40J-01 19 39899751 39899751 G A ZFP36 3'UTR 0.12 TCGA-FU-A40J-01 19 40947907 40947907 C G SERTAD3 Missense_Mutation p.Q27H 0.19 tolerated(0.1) benign(0.001) TCGA-FU-A40J-01 19 43586776 43586776 C T PSG2 5'UTR 0.18 TCGA-FU-A40J-01 19 4719937 4719937 C T DPP9 5'UTR 0.17 TCGA-FU-A40J-01 19 48801323 48801323 A G CCDC114 Missense_Mutation p.L442P 0.16 deleterious(0.02) probably_damaging(0.989) TCGA-FU-A40J-01 19 49621850 49621850 C A C19orf73 3'UTR 0.11 TCGA-FU-A40J-01 19 49621985 49621985 G A C19orf73 Nonsense_Mutation p.Q99* 0.17 TCGA-FU-A40J-01 19 50961953 50961953 C G MYBPC2 Missense_Mutation p.I816M 0.23 tolerated(0.37) benign(0.409) TCGA-FU-A40J-01 19 53077398 53077398 G T ZNF701 Missense_Mutation p.G66W 0.17 deleterious(0) probably_damaging(0.984) TCGA-FU-A40J-01 19 53993928 53993928 C G ZNF813 Missense_Mutation p.L148V 0.13 deleterious(0.05) possibly_damaging(0.899) TCGA-FU-A40J-01 19 54198484 54198484 G C MIR519B RNA 0.09 TCGA-FU-A40J-01 19 8976330 8976330 C T MUC16 Silent p.L14166L 0.16 TCGA-FU-A40J-01 1 108116734 108116734 C G VAV3 Missense_Mutation p.D813H 0.32 deleterious(0) probably_damaging(0.995) TCGA-FU-A40J-01 1 109299362 109299362 C T STXBP3 Missense_Mutation p.L78F 0.23 deleterious(0) possibly_damaging(0.58) TCGA-FU-A40J-01 1 11166701 11166701 C T MTOR 3'UTR 0.17 TCGA-FU-A40J-01 1 115828996 115828996 C T NGF Missense_Mutation p.V141M 0.24 tolerated(0.51) benign(0.057) TCGA-FU-A40J-01 1 13839596 13839596 G A LRRC38 Missense_Mutation p.R165C 0.13 deleterious(0.03) possibly_damaging(0.862) TCGA-FU-A40J-01 1 150131110 150131110 C T PLEKHO1 Missense_Mutation p.R208W 0.12 deleterious(0) probably_damaging(0.999) TCGA-FU-A40J-01 1 152085168 152085168 C A TCHH Silent p.R175R 0.16 TCGA-FU-A40J-01 1 152085169 152085169 C A TCHH Missense_Mutation p.R175L 0.16 unknown(0) TCGA-FU-A40J-01 1 153122604 153122604 G C SPRR2G 5'UTR 0.16 TCGA-FU-A40J-01 1 155014220 155014220 G T DCST1 Missense_Mutation p.R260L 0.22 tolerated(0.06) benign(0.01) TCGA-FU-A40J-01 1 156261440 156261440 C G TMEM79 3'UTR 0.12 TCGA-FU-A40J-01 1 157494309 157494309 T A FCRL5 Missense_Mutation p.R667W 0.25 deleterious(0) probably_damaging(0.997) TCGA-FU-A40J-01 1 158606546 158606546 T G SPTA1 Missense_Mutation p.K1732T 0.12 deleterious(0) probably_damaging(0.998) TCGA-FU-A40J-01 1 16074180 16074180 G A TMEM82 3'UTR 0.13 TCGA-FU-A40J-01 1 162493066 162493066 G C UHMK1 3'UTR 0.12 TCGA-FU-A40J-01 1 166961967 166961968 - GCGA MAEL Frame_Shift_Ins p.L126Rfs*7 0.13 TCGA-FU-A40J-01 1 171605176 171605176 C T MYOC Silent p.K468K 0.18 TCGA-FU-A40J-01 1 174969137 174969137 C T CACYBP 5'UTR 0.13 TCGA-FU-A40J-01 1 183387420 183387420 C A NMNAT2 5'UTR 0.16 TCGA-FU-A40J-01 1 186292841 186292841 G C TPR Missense_Mutation p.Q2092E 0.11 possibly_damaging(0.739) TCGA-FU-A40J-01 1 192127615 192127615 G A RGS18 5'UTR 0.18 TCGA-FU-A40J-01 1 197071695 197071695 C G ASPM Missense_Mutation p.R2229T 0.19 tolerated(0.08) possibly_damaging(0.883) TCGA-FU-A40J-01 1 202551652 202551652 G C PPP1R12B 3'UTR 0.08 TCGA-FU-A40J-01 1 21991728 21991728 G A RAP1GAP 5'UTR 0.08 TCGA-FU-A40J-01 1 228400470 228400470 G A OBSCN Missense_Mutation p.R329H 0.34 possibly_damaging(0.908) TCGA-FU-A40J-01 1 241875110 241875110 C G WDR64 Silent p.V317V 0.13 TCGA-FU-A40J-01 1 243652402 243652402 G C SDCCAG8 Missense_Mutation p.R691T 0.19 deleterious(0) probably_damaging(0.983) TCGA-FU-A40J-01 1 248813636 248813636 G T OR2T27 Missense_Mutation p.L184I 0.40 tolerated(0.09) benign(0.199) TCGA-FU-A40J-01 1 25737867 25737867 G A RHCE Intron 0.28 TCGA-FU-A40J-01 1 32090632 32090632 G A HCRTR1 Missense_Mutation p.E334K 0.28 tolerated(0.15) benign(0.168) TCGA-FU-A40J-01 1 33837992 33837992 C G PHC2 Missense_Mutation p.Q77H 0.30 deleterious(0) probably_damaging(0.998) TCGA-FU-A40J-01 1 3638614 3638614 C T TP73 Silent p.C153C 0.16 TCGA-FU-A40J-01 1 39877564 39877564 C T KIAA0754 Silent p.L407L 0.19 TCGA-FU-A40J-01 1 44202065 44202089 CTCTAGCTCACCCCAGGAGAAGCCT - ST3GAL3 Frame_Shift_Del p.H44Qfs*17 0.15 TCGA-FU-A40J-01 1 47348924 47348924 G A CYP4Z2P RNA 0.14 TCGA-FU-A40J-01 1 52926879 52926879 C G ZCCHC11 Missense_Mutation p.R1083T 0.20 deleterious(0) probably_damaging(0.972) TCGA-FU-A40J-01 1 57481088 57481088 G A DAB1 Silent p.G304G 0.17 TCGA-FU-A40J-01 1 63066839 63066839 G C ANGPTL3 Missense_Mutation p.L231F 0.16 tolerated(0.72) benign(0.008) TCGA-FU-A40J-01 20 1223271 1223271 G T RAD21L1 Nonsense_Mutation p.E289* 0.34 TCGA-FU-A40J-01 20 18022208 18022208 C G OVOL2 Missense_Mutation p.D161H 0.05 deleterious(0) probably_damaging(1) TCGA-FU-A40J-01 20 20350277 20350277 C G INSM1 Missense_Mutation p.Q456E 0.17 deleterious(0.01) benign(0.149) TCGA-FU-A40J-01 20 21492887 21492887 G A NKX2-2 Missense_Mutation p.R166C 0.17 deleterious(0) probably_damaging(0.998) TCGA-FU-A40J-01 20 23545643 23545643 C G CST9L Missense_Mutation p.R129T 0.22 tolerated(0.45) benign(0.008) TCGA-FU-A40J-01 20 23729716 23729716 T A CST1 Silent p.I93I 0.16 TCGA-FU-A40J-01 20 25203527 25203528 AG - ENTPD6 Frame_Shift_Del p.R367Sfs*91 0.21 TCGA-FU-A40J-01 20 33097964 33097964 C A ITCH 3'Flank 0.44 TCGA-FU-A40J-01 20 33097973 33097973 C T ITCH 3'Flank 0.42 TCGA-FU-A40J-01 20 33117788 33117788 G C DYNLRB1 Intron 0.13 TCGA-FU-A40J-01 20 33137790 33137790 G A MAP1LC3A Missense_Mutation p.M3I 0.09 tolerated_low_confidence(0.34) benign(0) TCGA-FU-A40J-01 20 34145303 34145303 C G ERGIC3 3'UTR 0.07 TCGA-FU-A40J-01 20 34763472 34763472 G C EPB41L1 Splice_Site p.X60_splice 0.60 TCGA-FU-A40J-01 20 42908113 42908113 C A GDAP1L1 3'UTR 0.12 TCGA-FU-A40J-01 20 43585051 43585051 C T TOMM34 Missense_Mutation p.R68K 0.36 tolerated(0.08) benign(0.005) TCGA-FU-A40J-01 20 43954053 43954053 G A SDC4 3'UTR 0.16 TCGA-FU-A40J-01 20 44670127 44670127 C A SLC12A5 Missense_Mutation p.N361K 0.17 deleterious(0.01) probably_damaging(1) TCGA-FU-A40J-01 20 62507208 62507208 G C TPD52L2 Missense_Mutation p.E118D 0.20 tolerated(0.73) benign(0.042) TCGA-FU-A40J-01 21 30699443 30699443 C G BACH1 Missense_Mutation p.S433C 0.29 deleterious(0) possibly_damaging(0.77) TCGA-FU-A40J-01 21 32410600 32410600 C T KRTAP19-8 Missense_Mutation p.G55R 0.20 deleterious_low_confidence(0) unknown(0) TCGA-FU-A40J-01 22 38343409 38343409 C A C22orf23 Missense_Mutation p.K76N 0.17 tolerated(0.1) possibly_damaging(0.827) TCGA-FU-A40J-01 22 40161572 40161572 C T ENTHD1 Missense_Mutation p.R292K 0.12 deleterious(0) benign(0) TCGA-FU-A40J-01 22 42016793 42016793 G C DESI1 Silent p.S17S 0.18 TCGA-FU-A40J-01 22 46780440 46780440 C G CELSR1 Missense_Mutation p.E2295Q 0.24 tolerated(0.53) benign(0.242) TCGA-FU-A40J-01 22 46787540 46787540 G A CELSR1 Silent p.L2046L 0.22 TCGA-FU-A40J-01 2 102508781 102508781 G T MAP4K4 3'Flank 0.49 TCGA-FU-A40J-01 2 103431219 103431219 C T TMEM182 Missense_Mutation p.S161L 0.11 tolerated(1) benign(0.132) TCGA-FU-A40J-01 2 106510688 106510688 C T NCK2 3'UTR 0.24 TCGA-FU-A40J-01 2 10959439 10959439 G C RNU7-176P 5'Flank 0.17 TCGA-FU-A40J-01 2 131099622 131099622 C T CCDC115 Missense_Mutation p.G26E 0.56 tolerated(0.97) benign(0.079) TCGA-FU-A40J-01 2 132919260 132919260 C T ANKRD30BL Missense_Mutation p.A7T 0.16 deleterious_low_confidence(0.05) benign(0.067) TCGA-FU-A40J-01 2 135957943 135957943 G C ZRANB3 Nonsense_Mutation p.S1070* 0.10 TCGA-FU-A40J-01 2 167266421 167266421 C T SCN7A Missense_Mutation p.D1246N 0.11 deleterious(0.01) possibly_damaging(0.838) TCGA-FU-A40J-01 2 191235744 191235744 C G INPP1 Missense_Mutation p.I272M 0.10 deleterious(0) possibly_damaging(0.537) TCGA-FU-A40J-01 2 196722277 196722277 C T DNAH7 Missense_Mutation p.M2746I 0.22 tolerated(0.45) benign(0.003) TCGA-FU-A40J-01 2 207040940 207040940 T A GPR1 Missense_Mutation p.E344D 0.10 tolerated(0.19) benign(0.026) TCGA-FU-A40J-01 2 211297810 211297810 G C LANCL1 3'UTR 0.35 TCGA-FU-A40J-01 2 213869522 213869522 C T IKZF2 3'UTR 0.28 TCGA-FU-A40J-01 2 223918955 223918955 C T KCNE4 3'UTR 0.19 TCGA-FU-A40J-01 2 224462894 224462894 G C SCG2 Silent p.L369L 0.15 TCGA-FU-A40J-01 2 233527528 233527528 G A EFHD1 Missense_Mutation p.D107N 0.16 deleterious(0.02) probably_damaging(1) TCGA-FU-A40J-01 2 237172927 237172927 T C ASB18 Missense_Mutation p.K21R 0.38 deleterious(0) probably_damaging(0.999) TCGA-FU-A40J-01 2 239975153 239975153 C G HDAC4 Intron 0.31 TCGA-FU-A40J-01 2 27460699 27460699 C T CAD Silent p.L1559L 0.35 TCGA-FU-A40J-01 2 27466321 27466321 C T CAD Missense_Mutation p.R2205C 0.15 deleterious(0) probably_damaging(1) TCGA-FU-A40J-01 2 27607771 27607771 T G PPM1G Missense_Mutation p.E198D 0.25 tolerated(0.34) benign(0.001) TCGA-FU-A40J-01 2 60684394 60684394 G C BCL11A 3'UTR 0.21 TCGA-FU-A40J-01 2 63101602 63101602 C T EHBP1 Missense_Mutation p.P409S 0.15 deleterious(0.05) benign(0.012) TCGA-FU-A40J-01 2 65538372 65538372 C T SPRED2 3'UTR 0.21 TCGA-FU-A40J-01 2 669621 669621 C G TMEM18 Missense_Mutation p.E128Q 0.27 tolerated(0.66) unknown(0) TCGA-FU-A40J-01 2 73676067 73676067 A G ALMS1 Missense_Mutation p.T804A 0.10 benign(0.051) TCGA-FU-A40J-01 2 86257483 86257483 C G POLR1A Missense_Mutation p.D1539H 0.17 deleterious(0) probably_damaging(0.992) TCGA-FU-A40J-01 2 86364249 86364249 C T PTCD3 Silent p.I655I 0.10 TCGA-FU-A40J-01 2 86669240 86669240 G A KDM3A Missense_Mutation p.D24N 0.24 tolerated(0.26) benign(0.177) TCGA-FU-A40J-01 2 98409038 98409038 C G TMEM131 Missense_Mutation p.E1319Q 0.21 tolerated_low_confidence(0.26) benign(0.176) TCGA-FU-A40J-01 3 121303884 121303884 G A ARGFX Missense_Mutation p.R114K 0.35 tolerated(1) benign(0.001) TCGA-FU-A40J-01 3 123699316 123699316 C T ROPN1 Missense_Mutation p.D5N 0.14 tolerated(0.25) possibly_damaging(0.474) TCGA-FU-A40J-01 3 167813129 167813129 G C GOLIM4 5'UTR 0.29 TCGA-FU-A40J-01 3 175042010 175042010 T C NAALADL2 Missense_Mutation p.I329T 0.19 tolerated(0.18) benign(0.004) TCGA-FU-A40J-01 3 185766533 185766533 G A ETV5 Silent p.S476S 0.20 TCGA-FU-A40J-01 3 195968876 195968876 C T PCYT1A Silent p.A217A 0.19 TCGA-FU-A40J-01 3 196612651 196612651 G A SENP5 Missense_Mutation p.C200Y 0.21 tolerated_low_confidence(1) benign(0) TCGA-FU-A40J-01 3 33686561 33686561 T C CLASP2 Intron 0.15 TCGA-FU-A40J-01 3 37035012 37035012 C G MLH1 5'UTR 0.06 TCGA-FU-A40J-01 3 39228399 39228399 C T XIRP1 Silent p.L846L 0.21 TCGA-FU-A40J-01 3 47950700 47950700 C G MAP4 Intron 0.05 TCGA-FU-A40J-01 3 52433158 52433158 C G DNAH1 Missense_Mutation p.L4128V 0.16 probably_damaging(0.967) TCGA-FU-A40J-01 3 53707786 53707786 G C CACNA1D Missense_Mutation p.S388T 0.13 tolerated(0.31) probably_damaging(0.99) TCGA-FU-A40J-01 3 53844063 53844063 C T CACNA1D Missense_Mutation p.S1997L 0.27 tolerated_low_confidence(0.48) probably_damaging(0.99) TCGA-FU-A40J-01 3 62063909 62063909 G A PTPRG Missense_Mutation p.G198R 0.25 tolerated(0.36) possibly_damaging(0.742) TCGA-FU-A40J-01 3 73453428 73453428 G A PDZRN3 Missense_Mutation p.T346M 0.21 deleterious(0.03) benign(0.274) TCGA-FU-A40J-01 4 106159880 106159880 G A TET2 Intron 0.29 TCGA-FU-A40J-01 4 187005261 187005261 C G TLR3 Missense_Mutation p.I807M 0.35 tolerated(0.49) possibly_damaging(0.68) TCGA-FU-A40J-01 4 502747 502747 G C PIGG Missense_Mutation p.E297Q 0.16 tolerated(0.23) benign(0.081) TCGA-FU-A40J-01 4 57138545 57138545 G C KIAA1211 5'Flank 0.08 TCGA-FU-A40J-01 4 83778199 83778199 G A SEC31A Missense_Mutation p.A596V 0.18 deleterious(0) probably_damaging(0.999) TCGA-FU-A40J-01 4 88084771 88084771 G A KLHL8 Missense_Mutation p.S588F 0.33 deleterious(0.01) possibly_damaging(0.776) TCGA-FU-A40J-01 5 122927040 122927040 G A CSNK1G3 Missense_Mutation p.D340N 0.24 tolerated(0.06) benign(0.02) TCGA-FU-A40J-01 5 127641308 127641308 C T FBN2 Missense_Mutation p.G1857S 0.10 tolerated(0.17) probably_damaging(0.968) TCGA-FU-A40J-01 5 132272780 132272780 G C AFF4 Silent p.L34L 0.21 TCGA-FU-A40J-01 5 140502562 140502562 G C PCDHB4 Missense_Mutation p.G328R 0.14 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-FU-A40J-01 5 149404045 149404045 C G HMGXB3 Missense_Mutation p.S421C 0.25 tolerated(0.05) probably_damaging(0.987) TCGA-FU-A40J-01 5 160886733 160886733 C G GABRB2 Missense_Mutation p.D119H 0.12 deleterious(0) probably_damaging(0.999) TCGA-FU-A40J-01 5 16935977 16935977 C T MYO10 5'UTR 0.28 TCGA-FU-A40J-01 5 175956299 175956299 T - RNF44 Frame_Shift_Del p.K409Sfs*3 0.35 TCGA-FU-A40J-01 5 176886203 176886203 G A DBN1 Missense_Mutation p.S343F 0.33 deleterious(0) probably_damaging(0.988) TCGA-FU-A40J-01 5 178415933 178415933 C T GRM6 Intron 0.21 TCGA-FU-A40J-01 5 72196870 72196870 G T TNPO1 Missense_Mutation p.M828I 0.21 deleterious(0.01) benign(0.038) TCGA-FU-A40J-01 5 850645 850645 G A ZDHHC11 Missense_Mutation p.P25S 0.24 deleterious(0.01) possibly_damaging(0.688) TCGA-FU-A40J-01 5 90006807 90006807 G A GPR98 Missense_Mutation p.G2945D 0.10 probably_damaging(0.992) TCGA-FU-A40J-01 6 10749469 10749469 G C TMEM14B 5'UTR 0.19 TCGA-FU-A40J-01 6 10749477 10749477 G A TMEM14B 5'UTR 0.17 TCGA-FU-A40J-01 6 114182582 114182582 C G MARCKS 3'UTR 0.12 TCGA-FU-A40J-01 6 153073374 153073374 C G VIP Nonsense_Mutation p.S21* 0.10 TCGA-FU-A40J-01 6 16148396 16148396 A G MYLIP 3'Flank 0.32 TCGA-FU-A40J-01 6 24784710 24784710 C G GMNN Silent p.A132A 0.12 TCGA-FU-A40J-01 6 26104486 26104486 G A HIST1H4C Silent p.%3D 0.12 TCGA-FU-A40J-01 6 27805754 27805754 C T HIST1H2AK Missense_Mutation p.E122K 0.05 tolerated_low_confidence(0.2) benign(0.101) TCGA-FU-A40J-01 6 27834864 27834864 C T HIST1H1B Silent p.A148A 0.26 TCGA-FU-A40J-01 6 27839672 27839672 G A HIST1H3I 3'UTR 0.23 TCGA-FU-A40J-01 6 28402379 28402379 G A ZSCAN23 Missense_Mutation p.R345C 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-FU-A40J-01 6 32713607 32713607 C T HLA-DQA2 Missense_Mutation p.T124M 0.31 tolerated(0.14) benign(0.01) TCGA-FU-A40J-01 6 36870110 36870110 C T C6orf89 Silent p.I108I 0.14 TCGA-FU-A40J-01 6 43395875 43395875 G C ABCC10 Silent p.P53P 0.20 TCGA-FU-A40J-01 6 43484840 43484840 G C POLR1C 5'UTR 0.21 TCGA-FU-A40J-01 6 43592414 43592414 G C GTPBP2 Missense_Mutation p.F311L 0.06 tolerated(0.14) benign(0.003) TCGA-FU-A40J-01 6 44240838 44240838 C T TMEM151B Silent p.L57L 0.27 TCGA-FU-A40J-01 6 54034338 54034338 C T MLIP Missense_Mutation p.L303F 0.33 tolerated(0.08) probably_damaging(0.943) TCGA-FU-A40J-01 7 100684083 100684083 C A MUC17 Missense_Mutation p.P3129H 0.08 probably_damaging(0.996) TCGA-FU-A40J-01 7 12274932 12274932 A G TMEM106B 3'UTR 0.13 TCGA-FU-A40J-01 7 136701604 136701604 C T CHRM2 3'UTR 0.31 TCGA-FU-A40J-01 7 154379779 154379779 G C DPP6 Intron 0.33 TCGA-FU-A40J-01 7 6537475 6537475 C T GRID2IP Missense_Mutation p.R1189Q 0.24 deleterious(0.02) benign(0.046) TCGA-FU-A40J-01 7 88966314 88966314 G T ZNF804B Nonsense_Mutation p.E1340* 0.23 TCGA-FU-A40J-01 7 95219000 95219000 G A PDK4 Silent p.I241I 0.17 TCGA-FU-A40J-01 7 95750033 95750033 G A SLC25A13 3'UTR 0.36 TCGA-FU-A40J-01 8 11995421 11995421 G C USP17L2 Missense_Mutation p.F283L 0.16 deleterious(0) probably_damaging(0.999) TCGA-FU-A40J-01 8 133142219 133142219 C T KCNQ3 Missense_Mutation p.D637N 0.16 deleterious(0.01) probably_damaging(1) TCGA-FU-A40J-01 8 143558900 143558900 C G BAI1 Silent p.A459A 0.08 TCGA-FU-A40J-01 8 145163767 145163767 C T KIAA1875 Silent p.F266F 0.12 TCGA-FU-A40J-01 8 22213079 22213079 C G PIWIL2 3'UTR 0.18 TCGA-FU-A40J-01 8 37696479 37696479 G C GPR124 Silent p.L755L 0.35 TCGA-FU-A40J-01 8 4277554 4277554 C T CSMD1 Silent p.V112V 0.18 TCGA-FU-A40J-01 8 59851877 59851877 G T TOX Missense_Mutation p.S132Y 0.16 deleterious(0) benign(0.097) TCGA-FU-A40J-01 8 72128979 72128979 G A EYA1 Silent p.F436F 0.26 TCGA-FU-A40J-01 8 99963187 99963187 C T OSR2 Intron 0.29 TCGA-FU-A40J-01 9 100071801 100071801 G A CCDC180 Missense_Mutation p.E103K 0.13 tolerated(0.06) possibly_damaging(0.631) TCGA-FU-A40J-01 9 103109309 103109309 A G TEX10 Missense_Mutation p.V187A 0.25 deleterious(0.01) possibly_damaging(0.867) TCGA-FU-A40J-01 9 115925762 115925762 T C SLC31A2 3'UTR 0.08 TCGA-FU-A40J-01 9 116082750 116082750 C G WDR31 Missense_Mutation p.A223P 0.25 deleterious(0.02) possibly_damaging(0.682) TCGA-FU-A40J-01 9 124965429 124965429 G A LHX6 3'UTR 0.26 TCGA-FU-A40J-01 9 131027861 131027861 C T GOLGA2 Intron 0.15 TCGA-FU-A40J-01 9 131457120 131457120 G C SET 3'UTR 0.25 TCGA-FU-A40J-01 9 131898774 131898774 C T PPP2R4 Silent p.L195L 0.05 TCGA-FU-A40J-01 9 139733894 139733894 G T RABL6 Missense_Mutation p.D573Y 0.19 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-FU-A40J-01 9 140852116 140852116 G T CACNA1B Missense_Mutation p.R437L 0.19 tolerated(0.17) benign(0.077) TCGA-FU-A40J-01 9 23690994 23690994 T G ELAVL2 3'UTR 0.25 TCGA-FU-A40J-01 9 4679584 4679584 G A CDC37L1 5'UTR 0.16 TCGA-FU-A40J-01 9 72435866 72435866 C T C9orf135 Missense_Mutation p.P24L 0.19 tolerated(1) benign(0) TCGA-FU-A40J-01 9 745203 745203 C G KANK1 Missense_Mutation p.P1343A 0.21 deleterious(0) probably_damaging(0.979) TCGA-FU-A40J-01 9 80409438 80409438 T C GNAQ Missense_Mutation p.I226V 0.18 tolerated(0.06) benign(0.304) TCGA-FU-A40J-01 9 95475015 95475015 C T BICD2 3'UTR 0.26 TCGA-FU-A40J-01 9 99233341 99233341 G A HABP4 Silent p.E264E 0.05 TCGA-FU-A40J-01 X 102508416 102508416 G A TCEAL8 3'UTR 0.07 TCGA-FU-A40J-01 X 105279118 105279118 C T SERPINA7 Missense_Mutation p.R294H 0.27 tolerated(0.76) benign(0.002) TCGA-FU-A40J-01 X 110464010 110464010 G T PAK3 3'UTR 0.14 TCGA-FU-A40J-01 X 11162183 11162183 C G ARHGAP6 Missense_Mutation p.R698T 0.25 tolerated(0.14) benign(0.062) TCGA-FU-A40J-01 X 119388943 119388943 C T ZBTB33 Missense_Mutation p.S558F 0.14 deleterious(0.05) probably_damaging(0.95) TCGA-FU-A40J-01 X 119581704 119581704 G A LAMP2 Nonsense_Mutation p.Q245* 0.18 TCGA-FU-A40J-01 X 129148261 129148261 G A BCORL1 Missense_Mutation p.A505T 0.15 benign(0.194) TCGA-FU-A40J-01 X 129148724 129148724 C A BCORL1 Missense_Mutation p.S659Y 0.26 probably_damaging(0.931) TCGA-FU-A40J-01 X 13338158 13338158 G C ATXN3L 5'UTR 0.17 TCGA-FU-A40J-01 X 133922794 133922794 G A FAM122B Missense_Mutation p.S134F 0.17 deleterious(0) probably_damaging(1) TCGA-FU-A40J-01 X 139587210 139587210 C T SOX3 Missense_Mutation p.E6K 0.18 deleterious_low_confidence(0.04) benign(0.004) TCGA-FU-A40J-01 X 140992840 140992840 G C MAGEC1 5'UTR 0.13 TCGA-FU-A40J-01 X 149919309 149919309 C G MTMR1 Missense_Mutation p.F550L 0.14 tolerated(0.52) benign(0) TCGA-FU-A40J-01 X 151870004 151870004 G C MAGEA6 Missense_Mutation p.E232Q 0.25 tolerated(0.08) benign(0.251) TCGA-FU-A40J-01 X 27765682 27765682 C T DCAF8L2 Missense_Mutation p.L224F 0.20 tolerated(0.05) possibly_damaging(0.781) TCGA-FU-A40J-01 X 32383310 32383310 G A DMD Nonsense_Mutation p.Q1618* 0.12 TCGA-FU-A40J-01 X 39911256 39911256 A G BCOR 3'UTR 0.25 TCGA-FU-A40J-01 X 43515504 43515504 C T MAOA 5'UTR 0.12 TCGA-FU-A40J-01 X 47426651 47426651 C G ARAF Nonsense_Mutation p.S299* 0.18 TCGA-FU-A40J-01 X 47919232 47919232 C A ZNF630 Missense_Mutation p.R200I 0.17 tolerated(0.1) possibly_damaging(0.77) TCGA-FU-A40J-01 X 48780399 48780399 G C OTUD5 3'UTR 0.10 TCGA-FU-A40J-01 X 48972640 48972640 G A GPKOW Silent p.L317L 0.19 TCGA-FU-A40J-01 X 48973411 48973411 C A GPKOW Nonsense_Mutation p.E296* 0.19 TCGA-FU-A40J-01 X 73046247 73046247 G A XIST RNA 0.23 TCGA-FU-A40J-01 X 73956844 73956844 T A KIAA2022 3'UTR 0.18 TCGA-FU-A40J-01 X 77304107 77304107 G C ATP7A 3'UTR 0.13 TCGA-FU-A5XV-01 10 104632312 104632312 G T AS3MT Missense_Mutation p.G93V 0.30 deleterious(0) probably_damaging(0.997) TCGA-FU-A5XV-01 10 124907820 124907820 C A HMX2 5'UTR 0.35 TCGA-FU-A5XV-01 10 15151806 15151806 C G NMT2 Missense_Mutation p.L457F 0.24 deleterious(0) probably_damaging(1) TCGA-FU-A5XV-01 10 51590233 51590233 G A NCOA4 3'UTR 0.36 TCGA-FU-A5XV-01 10 58118352 58118352 C T ZWINT Missense_Mutation p.D253N 0.37 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-FU-A5XV-01 10 75910965 75910965 G A ADK 5'Flank 0.16 TCGA-FU-A5XV-01 10 95518033 95518033 C T LGI1 Silent p.A44A 0.50 TCGA-FU-A5XV-01 10 96043642 96043642 G C PLCE1 Missense_Mutation p.D1631H 0.11 deleterious(0) possibly_damaging(0.897) TCGA-FU-A5XV-01 10 96580375 96580375 G A CYP2C19 Silent p.L314L 0.31 TCGA-FU-A5XV-01 11 116619090 116619090 G A BUD13 3'UTR 0.42 TCGA-FU-A5XV-01 11 118390460 118390461 - C KMT2A Frame_Shift_Ins p.N3762Efs*9 0.37 TCGA-FU-A5XV-01 11 22363305 22363305 C T SLC17A6 Silent p.R106R 0.17 TCGA-FU-A5XV-01 11 25100254 25100254 C T LUZP2 3'UTR 0.62 TCGA-FU-A5XV-01 11 3740736 3740736 G C NUP98 Missense_Mutation p.L769V 0.36 deleterious(0) probably_damaging(0.978) TCGA-FU-A5XV-01 11 45265423 45265423 C A SYT13 3'UTR 0.28 TCGA-FU-A5XV-01 11 45265429 45265429 C T SYT13 3'UTR 0.25 TCGA-FU-A5XV-01 11 45931414 45931414 C T PEX16 3'UTR 0.25 TCGA-FU-A5XV-01 11 58956669 58956669 G A DTX4 Silent p.L344L 0.49 TCGA-FU-A5XV-01 11 66034574 66034574 C T KLC2 3'UTR 0.39 TCGA-FU-A5XV-01 11 71510780 71510780 C T FAM86C1 3'UTR 0.33 TCGA-FU-A5XV-01 11 73849868 73849868 C G C2CD3 Silent p.L284L 0.46 TCGA-FU-A5XV-01 12 121712313 121712313 G C CAMKK2 Missense_Mutation p.S6C 0.41 deleterious_low_confidence(0) benign(0.219) TCGA-FU-A5XV-01 12 123782609 123782609 C T SBNO1 Missense_Mutation p.E1319K 0.40 deleterious(0.02) possibly_damaging(0.685) TCGA-FU-A5XV-01 12 22837893 22837893 G C ETNK1 3'UTR 0.30 TCGA-FU-A5XV-01 12 55714417 55714417 C G OR6C1 Missense_Mutation p.L12V 0.57 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-FU-A5XV-01 12 72030728 72030728 G C ZFC3H1 Missense_Mutation p.P613A 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-FU-A5XV-01 12 7526002 7526002 G A CD163L1 Missense_Mutation p.T1215M 0.27 tolerated(0.17) benign(0.013) TCGA-FU-A5XV-01 12 77436899 77436899 G A E2F7 Nonsense_Mutation p.R357* 0.31 TCGA-FU-A5XV-01 13 37598511 37598511 G C SUPT20H Missense_Mutation p.I466M 0.38 tolerated(0.06) benign(0.41) TCGA-FU-A5XV-01 13 84453964 84453964 G A SLITRK1 Missense_Mutation p.T560M 0.10 deleterious(0.02) benign(0.035) TCGA-FU-A5XV-01 14 105608720 105608720 C T JAG2 3'UTR 0.30 TCGA-FU-A5XV-01 14 21052552 21052552 C G RNASE11 Missense_Mutation p.E28Q 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-FU-A5XV-01 14 21052653 21052653 C G RNASE11 Missense_Mutation p.R45T 0.48 deleterious_low_confidence(0) benign(0.412) TCGA-FU-A5XV-01 14 50907112 50907112 G A MAP4K5 Missense_Mutation p.L538F 0.36 deleterious(0) probably_damaging(0.988) TCGA-FU-A5XV-01 14 56043790 56043790 C T KTN1 5'Flank 0.45 TCGA-FU-A5XV-01 14 93649466 93649466 G C MOAP1 3'UTR 0.31 TCGA-FU-A5XV-01 15 40498657 40498657 G C BUB1B Silent p.L669L 0.36 TCGA-FU-A5XV-01 15 65892200 65892200 T G VWA9 Missense_Mutation p.Q76P 0.05 tolerated(0.2) benign(0.049) TCGA-FU-A5XV-01 15 76136660 76136660 T C UBE2Q2 Intron 0.39 TCGA-FU-A5XV-01 16 15045687 15045687 C G NPIPA1 Silent p.L286L 0.13 TCGA-FU-A5XV-01 16 1723911 1723911 G T CRAMP1L Missense_Mutation p.M1225I 0.35 deleterious(0) probably_damaging(0.995) TCGA-FU-A5XV-01 16 20976329 20976329 G A DNAH3 Silent p.I2959I 0.50 TCGA-FU-A5XV-01 16 24895396 24895396 C T SLC5A11 Missense_Mutation p.T203M 0.40 deleterious(0.01) probably_damaging(1) TCGA-FU-A5XV-01 16 30846270 30846270 C G BCL7C Nonstop_Mutation p.*243Sext*38 0.13 TCGA-FU-A5XV-01 16 3433692 3433692 C G ZSCAN32 Missense_Mutation p.E206D 0.41 tolerated(0.08) benign(0.332) TCGA-FU-A5XV-01 16 46723632 46723632 G C ORC6 Silent p.L5L 0.32 TCGA-FU-A5XV-01 16 67692539 67692539 C T ACD Missense_Mutation p.E336K 0.30 tolerated(0.07) benign(0.008) TCGA-FU-A5XV-01 17 36002173 36002173 C G DDX52 Missense_Mutation p.E84D 0.17 tolerated(0.21) benign(0.001) TCGA-FU-A5XV-01 17 4998674 4998674 C T ZFP3 3'UTR 0.34 TCGA-FU-A5XV-01 17 4999134 4999134 C A ZFP3 3'UTR 0.44 TCGA-FU-A5XV-01 17 56567863 56567863 C G MTMR4 3'UTR 0.30 TCGA-FU-A5XV-01 17 66914258 66914258 C T ABCA8 Silent p.L619L 0.36 TCGA-FU-A5XV-01 17 80401643 80401643 C T C17orf62 3'UTR 0.12 TCGA-FU-A5XV-01 18 9815085 9815120 TAATGATTTGTGTACACTGTTGGTTTAGGATTCATT - RAB31 Splice_Site p.X92_splice 0.17 TCGA-FU-A5XV-01 19 1529760 1529760 C T PLK5 Missense_Mutation p.R169W 0.34 tolerated(0.2) benign(0.002) TCGA-FU-A5XV-01 19 19790321 19790321 G A ZNF101 Missense_Mutation p.G175R 0.27 deleterious(0.01) probably_damaging(0.944) TCGA-FU-A5XV-01 19 22786023 22786023 C G AC011467.1 3'Flank 0.27 TCGA-FU-A5XV-01 19 33168794 33168794 G A RGS9BP 3'UTR 0.39 TCGA-FU-A5XV-01 19 39232548 39232548 G C CAPN12 Silent p.L143L 0.57 TCGA-FU-A5XV-01 19 41083468 41083468 C T SHKBP1 Silent p.F64F 0.35 TCGA-FU-A5XV-01 19 49539053 49539053 C A CGB1 Silent p.V94V 0.20 TCGA-FU-A5XV-01 19 58258216 58258216 C TT ZNF776 5'UTR 0.42 TCGA-FU-A5XV-01 19 58989542 58989542 G A ZNF446 Silent p.R207R 0.32 TCGA-FU-A5XV-01 1 10384953 10384953 G T KIF1B Missense_Mutation p.S846I 0.34 tolerated(0.25) probably_damaging(0.93) TCGA-FU-A5XV-01 1 110128893 110128893 G A GNAI3 Missense_Mutation p.E216K 0.44 deleterious(0) possibly_damaging(0.891) TCGA-FU-A5XV-01 1 110255673 110255673 T G GSTM5 Intron 0.27 TCGA-FU-A5XV-01 1 116380630 116380630 C T NHLH2 Missense_Mutation p.A122T 0.16 deleterious(0) probably_damaging(0.999) TCGA-FU-A5XV-01 1 145747058 145747058 C T PDZK1 Silent p.F5F 0.21 TCGA-FU-A5XV-01 1 149877557 149877557 G A SV2A Silent p.F640F 0.44 TCGA-FU-A5XV-01 1 166833160 166833160 T A TADA1 Splice_Site p.X78_splice 0.17 TCGA-FU-A5XV-01 1 16905745 16905745 C G NBPF1 Missense_Mutation p.E582Q 0.09 tolerated(0.22) possibly_damaging(0.493) TCGA-FU-A5XV-01 1 183536404 183536404 C T NCF2 Missense_Mutation p.G264R 0.46 deleterious(0) possibly_damaging(0.873) TCGA-FU-A5XV-01 1 183617142 183617142 C G APOBEC4 Missense_Mutation p.E259Q 0.29 tolerated(0.43) benign(0.035) TCGA-FU-A5XV-01 1 197169636 197169636 A G ZBTB41 5'UTR 0.32 TCGA-FU-A5XV-01 1 200942677 200942677 C T KIF21B 3'Flank 0.36 TCGA-FU-A5XV-01 1 202897624 202897624 G T KLHL12 5'Flank 0.35 TCGA-FU-A5XV-01 1 202931828 202931828 C G CYB5R1 Splice_Site p.X249_splice 0.30 TCGA-FU-A5XV-01 1 224872537 224872537 C G CNIH3 Missense_Mutation p.L64V 0.34 tolerated(0.05) benign(0.13) TCGA-FU-A5XV-01 1 233518245 233518245 C T MLK4 Nonsense_Mutation p.Q967* 0.21 TCGA-FU-A5XV-01 1 243329275 243329275 C T CEP170 Missense_Mutation p.V663I 0.03 tolerated(0.6) benign(0) TCGA-FU-A5XV-01 1 25633204 25633204 G A RHD Missense_Mutation p.G353R 0.17 tolerated(0.53) benign(0.002) TCGA-FU-A5XV-01 1 3328829 3328829 G A PRDM16 Missense_Mutation p.G690R 0.20 deleterious(0.03) benign(0.361) TCGA-FU-A5XV-01 1 57002687 57002687 A G PPAP2B Silent p.T79T 0.25 TCGA-FU-A5XV-01 1 93309452 93309452 G A FAM69A Nonsense_Mutation p.Q259* 0.56 TCGA-FU-A5XV-01 1 93646048 93646048 G C CCDC18 5'Flank 0.33 TCGA-FU-A5XV-01 20 47849940 47849940 G C DDX27 Missense_Mutation p.E408Q 0.43 tolerated(0.21) possibly_damaging(0.529) TCGA-FU-A5XV-01 22 20457501 20457501 C T RIMBP3 Silent p.P1267P 0.11 TCGA-FU-A5XV-01 22 26707735 26707735 G A SEZ6L Silent p.A561A 0.32 TCGA-FU-A5XV-01 22 29538137 29538137 G C KREMEN1 Intron 0.39 TCGA-FU-A5XV-01 2 10142186 10142186 C T GRHL1 3'UTR 0.18 TCGA-FU-A5XV-01 2 103433112 103433112 C T TMEM182 3'UTR 0.40 TCGA-FU-A5XV-01 2 163693182 163693182 C G KCNH7 Missense_Mutation p.D58H 0.40 deleterious(0) probably_damaging(0.992) TCGA-FU-A5XV-01 2 204302965 204302965 A - RAPH1 3'UTR 0.30 TCGA-FU-A5XV-01 2 212248368 212248368 G A ERBB4 Missense_Mutation p.P1300L 0.40 deleterious_low_confidence(0) possibly_damaging(0.743) TCGA-FU-A5XV-01 2 219892628 219892628 C T CCDC108 Missense_Mutation p.S652N 0.31 deleterious(0) probably_damaging(0.972) TCGA-FU-A5XV-01 2 231973557 231973557 C T HTR2B Missense_Mutation p.G374R 0.31 deleterious(0) probably_damaging(1) TCGA-FU-A5XV-01 2 234545342 234545342 C T UGT1A10 Silent p.V58V 0.35 TCGA-FU-A5XV-01 2 37428918 37428919 - T CEBPZ Frame_Shift_Ins p.Q1052Tfs*7 0.24 TCGA-FU-A5XV-01 2 44019946 44019946 C T DYNC2LI1 Intron 0.31 TCGA-FU-A5XV-01 2 45233294 45233294 C G SIX2 3'UTR 0.28 TCGA-FU-A5XV-01 3 108159942 108159942 C G MYH15 Missense_Mutation p.E961Q 0.27 deleterious(0) possibly_damaging(0.451) TCGA-FU-A5XV-01 3 115395319 115395319 G A GAP43 Missense_Mutation p.E200K 0.28 deleterious(0) probably_damaging(0.992) TCGA-FU-A5XV-01 3 142731178 142731178 C T U2SURP Missense_Mutation p.H69Y 0.29 deleterious_low_confidence(0.02) benign(0.022) TCGA-FU-A5XV-01 3 160151656 160151656 T C SMC4 3'UTR 0.43 TCGA-FU-A5XV-01 3 185252608 185252608 G C LIPH Missense_Mutation p.S121C 0.14 deleterious(0.01) possibly_damaging(0.897) TCGA-FU-A5XV-01 3 190374483 190374483 C G IL1RAP 3'UTR 0.32 TCGA-FU-A5XV-01 4 101109298 101109298 G A DDIT4L Missense_Mutation p.P40S 0.58 tolerated(0.12) benign(0.162) TCGA-FU-A5XV-01 4 118005231 118005231 C T TRAM1L1 3'UTR 0.42 TCGA-FU-A5XV-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.52 deleterious(0) probably_damaging(0.998) TCGA-FU-A5XV-01 4 6709590 6709590 G A MRFAP1L1 3'UTR 0.46 TCGA-FU-A5XV-01 4 99795811 99795811 C T EIF4E 3'UTR 0.73 TCGA-FU-A5XV-01 5 131323746 131323746 C T ACSL6 Missense_Mutation p.V276M 0.07 tolerated(0.22) benign(0.115) TCGA-FU-A5XV-01 5 149515391 149515391 G C PDGFRB Missense_Mutation p.Q31E 0.62 tolerated(1) benign(0.001) TCGA-FU-A5XV-01 5 177658509 177658509 G T PHYKPL Silent p.L25L 0.57 TCGA-FU-A5XV-01 5 179260716 179260716 C G SQSTM1 Missense_Mutation p.L367V 0.23 tolerated(0.11) benign(0.033) TCGA-FU-A5XV-01 5 1879705 1879705 C T IRX4 Missense_Mutation p.E217K 0.21 deleterious(0) possibly_damaging(0.504) TCGA-FU-A5XV-01 5 26915832 26915832 C T CDH9 Silent p.S143S 0.14 TCGA-FU-A5XV-01 5 39308447 39308447 T - C9 Frame_Shift_Del p.D376Tfs*2 0.12 TCGA-FU-A5XV-01 5 40760210 40760210 G A PRKAA1 3'Flank 0.35 TCGA-FU-A5XV-01 5 446336 446336 C T EXOC3 Missense_Mutation p.R6W 0.30 deleterious(0) probably_damaging(0.973) TCGA-FU-A5XV-01 5 5462874 5462874 G C KIAA0947 Missense_Mutation p.V1143L 0.26 tolerated(0.12) benign(0.05) TCGA-FU-A5XV-01 5 78610439 78610439 T G JMY Silent p.P808P 0.73 TCGA-FU-A5XV-01 5 795932 795932 C T ZDHHC11 3'UTR 0.54 TCGA-FU-A5XV-01 6 139265136 139265136 C T REPS1 Missense_Mutation p.R257Q 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-FU-A5XV-01 6 26205150 26205150 G C HIST1H4E Missense_Mutation p.R93T 0.41 deleterious(0) probably_damaging(0.992) TCGA-FU-A5XV-01 6 35987463 35987463 C T SLC26A8 Missense_Mutation p.A8T 0.18 tolerated(1) benign(0) TCGA-FU-A5XV-01 6 46793205 46793205 G C MEP1A Missense_Mutation p.E251D 0.43 tolerated(0.34) possibly_damaging(0.61) TCGA-FU-A5XV-01 6 73821091 73821091 G C KCNQ5 Missense_Mutation p.E364Q 0.07 deleterious(0.03) probably_damaging(0.92) TCGA-FU-A5XV-01 6 82459782 82459782 G A FAM46A Missense_Mutation p.S320F 0.33 deleterious(0) probably_damaging(1) TCGA-FU-A5XV-01 6 84317425 84317425 G A SNAP91 Missense_Mutation p.P339S 0.15 tolerated(0.1) unknown(0) TCGA-FU-A5XV-01 7 100401197 100401197 G A EPHB4 Silent p.I950I 0.35 TCGA-FU-A5XV-01 7 102004775 102004775 C T PRKRIP1 5'UTR 0.28 TCGA-FU-A5XV-01 7 103143563 103143563 C T RELN Missense_Mutation p.D2797N 0.44 deleterious(0.03) benign(0.001) TCGA-FU-A5XV-01 7 103270624 103270624 C G RELN Splice_Site p.X822_splice 0.29 TCGA-FU-A5XV-01 7 103777293 103777293 G A ORC5 Silent p.D399D 0.26 TCGA-FU-A5XV-01 7 27282233 27282233 C G EVX1 5'UTR 0.29 TCGA-FU-A5XV-01 7 39446223 39446223 C T POU6F2 Nonsense_Mutation p.Q304* 0.27 TCGA-FU-A5XV-01 7 44283089 44283089 G T CAMK2B Missense_Mutation p.A151D 0.31 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-FU-A5XV-01 7 70597904 70597904 T G WBSCR17 Missense_Mutation p.F39C 0.18 tolerated_low_confidence(0.18) benign(0.253) TCGA-FU-A5XV-01 7 72732856 72732856 G A TRIM50 Nonsense_Mutation p.Q231* 0.34 TCGA-FU-A5XV-01 8 124664263 124664263 C T KLHL38 Missense_Mutation p.V302I 0.33 deleterious(0.04) possibly_damaging(0.557) TCGA-FU-A5XV-01 8 23294733 23294733 G A ENTPD4 Missense_Mutation p.P363L 0.31 deleterious(0) probably_damaging(0.99) TCGA-FU-A5XV-01 8 28908915 28908915 G A HMBOX1 3'UTR 0.31 TCGA-FU-A5XV-01 9 114904663 114904663 C G SUSD1 Missense_Mutation p.E215Q 0.30 tolerated(0.12) possibly_damaging(0.624) TCGA-FU-A5XV-01 9 116039003 116039003 C T PRPF4 Missense_Mutation p.S69F 0.38 deleterious(0.05) benign(0.002) TCGA-FU-A5XV-01 9 131386727 131386727 C T SPTAN1 Nonsense_Mutation p.Q1985* 0.21 TCGA-FU-A5XV-01 9 140114971 140114971 C T RNF208 Missense_Mutation p.E232K 0.40 deleterious(0.04) benign(0.374) TCGA-FU-A5XV-01 9 17309221 17309221 C T CNTLN Nonsense_Mutation p.Q438* 0.39 TCGA-FU-A5XV-01 9 4661977 4661977 G C SPATA6L Silent p.L33L 0.43 TCGA-FU-A5XV-01 9 4661989 4661989 G A SPATA6L Silent p.L29L 0.43 TCGA-FU-A5XV-01 9 4663041 4663041 G C PPAPDC2 Silent p.S222S 0.32 TCGA-FU-A5XV-01 9 96850123 96850123 A G PTPDC1 Missense_Mutation p.N141D 0.12 tolerated(0.27) benign(0.037) TCGA-FU-A5XV-01 X 151453188 151453192 CTTCA - GABRA3 Frame_Shift_Del p.V93Dfs*2 0.39 TCGA-FU-A5XV-01 X 55041279 55041279 C T ALAS2 Silent p.L446L 0.58 TCGA-FU-A5XV-01 X 7023797 7023797 C G HDHD1 Silent p.L71L 0.52 TCGA-FU-A770-01 10 102089754 102089754 C T PKD2L1 Missense_Mutation p.R36K 0.32 tolerated(0.67) benign(0.001) TCGA-FU-A770-01 10 112590901 112590901 G A RBM20 Missense_Mutation p.M1178I 0.36 tolerated(0.74) benign(0) TCGA-FU-A770-01 10 21805717 21805717 G A SKIDA1 Silent p.H345H 0.24 TCGA-FU-A770-01 10 92631788 92631788 G A RPP30 Silent p.L15L 0.23 TCGA-FU-A770-01 11 102447862 102447862 C G MMP20 3'UTR 0.40 TCGA-FU-A770-01 11 102447885 102447885 C G MMP20 3'UTR 0.42 TCGA-FU-A770-01 11 65272311 65272311 T A MALAT1 RNA 0.41 TCGA-FU-A770-01 11 66444539 66444539 C G RBM4B Silent p.L4L 0.35 TCGA-FU-A770-01 11 96124324 96124324 G A JRKL Missense_Mutation p.E171K 0.46 deleterious(0.01) probably_damaging(0.951) TCGA-FU-A770-01 12 10954804 10954804 C T TAS2R7 Missense_Mutation p.M122I 0.35 tolerated(0.09) benign(0.011) TCGA-FU-A770-01 12 109687835 109687835 G C ACACB Missense_Mutation p.E1906Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-FU-A770-01 12 112572848 112572848 A G TRAFD1 Missense_Mutation p.K72R 0.43 tolerated(0.09) benign(0.165) TCGA-FU-A770-01 12 15773670 15773670 G A EPS8 3'UTR 0.50 TCGA-FU-A770-01 12 29639271 29639271 C T OVCH1 Silent p.R301R 0.29 TCGA-FU-A770-01 12 52159647 52159647 G A SCN8A Missense_Mutation p.E913K 0.34 tolerated(0.39) benign(0.013) TCGA-FU-A770-01 12 52159746 52159746 G A SCN8A Missense_Mutation p.E946K 0.34 deleterious(0) possibly_damaging(0.679) TCGA-FU-A770-01 14 95085798 95085798 G A SERPINA3 Missense_Mutation p.E304K 0.34 tolerated(0.9) benign(0.002) TCGA-FU-A770-01 15 100942982 100942982 T C CERS3 Missense_Mutation p.D363G 0.26 tolerated(0.37) benign(0.002) TCGA-FU-A770-01 15 42158019 42158020 - CTCGGAA SPTBN5 Frame_Shift_Ins p.G2302Vfs*12 0.20 TCGA-FU-A770-01 15 90320500 90320500 C T MESP2 Silent p.A304A 0.30 TCGA-FU-A770-01 16 31121606 31121606 C G BCKDK Silent p.L168L 0.42 TCGA-FU-A770-01 16 67899026 67899026 G A NUTF2 5'UTR 0.42 TCGA-FU-A770-01 16 81077772 81077772 C T ATMIN Nonsense_Mutation p.Q557* 0.38 TCGA-FU-A770-01 17 1560004 1560004 G A PRPF8 Missense_Mutation p.P1853S 0.23 tolerated(0.05) probably_damaging(1) TCGA-FU-A770-01 17 74846569 74846569 C T LINC00868 RNA 0.34 TCGA-FU-A770-01 19 15164616 15164616 G A CASP14 Missense_Mutation p.V84M 0.28 deleterious(0) probably_damaging(1) TCGA-FU-A770-01 19 19616777 19616777 G A GATAD2A 3'UTR 0.33 TCGA-FU-A770-01 19 37487754 37487754 G A ZNF568 Silent p.R323R 0.26 TCGA-FU-A770-01 19 47421954 47421954 G C ARHGAP35 Missense_Mutation p.D8H 0.41 deleterious(0.04) probably_damaging(0.959) TCGA-FU-A770-01 19 8130690 8130690 C T FBN3 3'UTR 0.28 TCGA-FU-A770-01 1 100661746 100661746 C T DBT 3'UTR 0.20 TCGA-FU-A770-01 1 101705921 101705922 - T S1PR1 3'UTR 0.17 TCGA-FU-A770-01 1 175129897 175129897 G A KIAA0040 Nonsense_Mutation p.Q85* 0.31 TCGA-FU-A770-01 1 36784876 36784876 C T SH3D21 Silent p.P293P 0.25 TCGA-FU-A770-01 1 8399605 8399605 C T SLC45A1 Silent p.I609I 0.25 TCGA-FU-A770-01 1 9027808 9027808 C T CA6 Missense_Mutation p.T221M 0.30 deleterious(0) probably_damaging(1) TCGA-FU-A770-01 20 30898823 30898823 C A KIF3B Silent p.R415R 0.32 TCGA-FU-A770-01 20 47241804 47241804 C A PREX1 3'UTR 0.43 TCGA-FU-A770-01 20 61950516 61950516 G A COL20A1 Missense_Mutation p.E924K 0.32 tolerated(0.16) benign(0.368) TCGA-FU-A770-01 20 8755229 8755229 C A PLCB1 Missense_Mutation p.Q992K 0.38 tolerated(0.87) benign(0.001) TCGA-FU-A770-01 22 30423181 30423181 C T MTMR3 3'UTR 0.24 TCGA-FU-A770-01 22 38824095 38824095 G A KCNJ4 Missense_Mutation p.R15W 0.38 deleterious(0) possibly_damaging(0.859) TCGA-FU-A770-01 2 108487587 108487587 C A RGPD4 Missense_Mutation p.Q1043K 0.30 tolerated(0.21) possibly_damaging(0.771) TCGA-FU-A770-01 2 111925599 111925599 A G BCL2L11 3'UTR 0.12 TCGA-FU-A770-01 2 116538475 116538475 C G DPP10 Missense_Mutation p.R467G 0.33 deleterious(0) probably_damaging(0.934) TCGA-FU-A770-01 2 172691340 172691340 G A SLC25A12 Silent p.F216F 0.29 TCGA-FU-A770-01 2 179391460 179391460 C G TTN 3'UTR 0.32 TCGA-FU-A770-01 2 179392002 179392002 C T TTN Missense_Mutation p.D35905N 0.27 TCGA-FU-A770-01 2 18745152 18745152 G T NT5C1B Silent p.I581I 0.20 TCGA-FU-A770-01 3 121263576 121263576 G A POLQ Missense_Mutation p.S114L 0.15 deleterious(0) possibly_damaging(0.752) TCGA-FU-A770-01 3 35726086 35726086 C T ARPP21 Intron 0.34 TCGA-FU-A770-01 3 49701900 49701900 G A BSN Missense_Mutation p.A3885T 0.31 probably_damaging(0.959) TCGA-FU-A770-01 3 50153540 50153540 C T RBM5 Intron 0.35 TCGA-FU-A770-01 4 46060368 46060368 G A GABRG1 Missense_Mutation p.T261I 0.26 deleterious(0.01) possibly_damaging(0.893) TCGA-FU-A770-01 4 6086678 6086678 G A JAKMIP1 Silent p.D283D 0.25 TCGA-FU-A770-01 4 69692206 69692206 G A UGT2B10 Missense_Mutation p.D360N 0.28 deleterious(0.01) possibly_damaging(0.574) TCGA-FU-A770-01 5 118832280 118832280 C T HSD17B4 Missense_Mutation p.S329L 0.23 tolerated(0.07) benign(0.018) TCGA-FU-A770-01 5 150408308 150408308 G T GPX3 3'UTR 0.26 TCGA-FU-A770-01 5 170833477 170833481 AGTCC - NPM1 Intron 0.39 TCGA-FU-A770-01 5 179201801 179201801 C G MAML1 Missense_Mutation p.L992V 0.35 deleterious(0) probably_damaging(0.998) TCGA-FU-A770-01 5 179202821 179202821 C A MAML1 3'UTR 0.38 TCGA-FU-A770-01 5 179203567 179203567 C T MAML1 3'UTR 0.39 TCGA-FU-A770-01 5 179203722 179203722 C T MAML1 3'UTR 0.33 TCGA-FU-A770-01 5 41172399 41172399 G A C6 Missense_Mutation p.R407C 0.33 deleterious(0.03) probably_damaging(0.94) TCGA-FU-A770-01 5 94027876 94027876 C T ANKRD32 Silent p.L870L 0.32 TCGA-FU-A770-01 6 111689105 111689105 A G REV3L Silent p.N1962N 0.30 TCGA-FU-A770-01 6 129618862 129618862 C T LAMA2 Silent p.G963G 0.26 TCGA-FU-A770-01 6 161771035 161771035 C T PARK2 3'UTR 0.13 TCGA-FU-A770-01 6 99831699 99831699 A G COQ3 Silent p.V36V 0.26 TCGA-FU-A770-01 7 151848547 151848548 - T KMT2C Frame_Shift_Ins p.D4216Rfs*24 0.14 TCGA-FU-A770-01 7 151902278 151902278 G A KMT2C Nonsense_Mutation p.R1292* 0.25 TCGA-FU-A770-01 7 44156597 44156597 G A POLD2 Missense_Mutation p.S200F 0.33 deleterious(0) probably_damaging(1) TCGA-FU-A770-01 9 139935437 139935437 C T NPDC1 Splice_Site p.X129_splice 0.40 TCGA-FU-A770-01 9 21994297 21994297 G A RP11-149I2.4 5'Flank 0.20 TCGA-FU-A770-01 9 35403968 35403968 G A UNC13B Missense_Mutation p.E1572K 0.32 deleterious(0) possibly_damaging(0.453) TCGA-FU-A770-01 X 102338372 102338372 G A NXF3 Missense_Mutation p.A165V 0.25 deleterious(0.02) possibly_damaging(0.708) TCGA-FU-A770-01 X 128782615 128782615 G T APLN Silent p.P74P 0.29 TCGA-FU-A770-01 X 134716150 134716150 C T DDX26B 3'UTR 0.28 TCGA-FU-A770-01 X 150348926 150348926 G A GPR50 Missense_Mutation p.A291T 0.29 deleterious(0.01) probably_damaging(0.918) TCGA-FU-A770-01 X 47307757 47307757 T C ZNF41 Missense_Mutation p.D471G 0.28 deleterious(0.02) possibly_damaging(0.84) TCGA-FU-A770-01 X 53114244 53114244 C G TSPYL2 Nonsense_Mutation p.S369* 0.33 TCGA-GH-A9DA-01 10 88683413 88683414 CA - BMPR1A Frame_Shift_Del p.T513Sfs*5 0.33 TCGA-GH-A9DA-01 10 98154945 98154945 C A TLL2 Missense_Mutation p.K575N 0.25 deleterious(0.01) benign(0.194) TCGA-GH-A9DA-01 11 36310924 36310924 C G COMMD9 Missense_Mutation p.Q13H 0.46 tolerated(0.05) probably_damaging(0.968) TCGA-GH-A9DA-01 11 5275582 5275582 G A HBG2 Silent p.T85T 0.13 TCGA-GH-A9DA-01 11 62439001 62439001 G A C11orf48 5'UTR 0.22 TCGA-GH-A9DA-01 11 94197384 94197384 C G MRE11A Missense_Mutation p.E374Q 0.43 tolerated(0.11) benign(0.091) TCGA-GH-A9DA-01 12 122396959 122396959 C G WDR66 Missense_Mutation p.H698D 0.21 deleterious(0) probably_damaging(0.985) TCGA-GH-A9DA-01 12 132626121 132626121 G T DDX51 Silent p.I342I 0.52 TCGA-GH-A9DA-01 12 49933202 49933202 G A KCNH3 Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.999) TCGA-GH-A9DA-01 12 49954122 49954122 C G MCRS1 Silent p.L292L 0.53 TCGA-GH-A9DA-01 12 56118347 56118347 G C RDH5 3'UTR 0.53 TCGA-GH-A9DA-01 13 41831853 41831853 G A MTRF1 Intron 0.34 TCGA-GH-A9DA-01 14 47309850 47309850 A G MDGA2 3'UTR 0.47 TCGA-GH-A9DA-01 14 69991027 69991027 G T PLEKHD1 Missense_Mutation p.Q244H 0.41 tolerated(0.09) probably_damaging(0.997) TCGA-GH-A9DA-01 14 75373713 75373713 C T RPS6KL1 3'UTR 0.47 TCGA-GH-A9DA-01 14 96752093 96752093 C G ATG2B Nonstop_Mutation p.*2079Sext*43 0.69 TCGA-GH-A9DA-01 15 28386775 28386775 G A HERC2 Nonsense_Mutation p.R3940* 0.33 TCGA-GH-A9DA-01 15 40661381 40661381 C G DISP2 Missense_Mutation p.S1023C 0.25 deleterious(0) probably_damaging(0.985) TCGA-GH-A9DA-01 15 40661891 40661891 C T DISP2 Missense_Mutation p.S1193F 0.34 deleterious(0) probably_damaging(1) TCGA-GH-A9DA-01 15 40756067 40756067 C T BAHD1 Missense_Mutation p.P608L 0.31 deleterious(0.02) possibly_damaging(0.841) TCGA-GH-A9DA-01 15 42187213 42187213 G A EHD4 3'Flank 0.50 TCGA-GH-A9DA-01 15 83212196 83212196 T G CPEB1 3'Flank 0.73 TCGA-GH-A9DA-01 15 83519932 83519932 C G HOMER2 Missense_Mutation p.E283Q 0.29 tolerated(0.27) probably_damaging(0.997) TCGA-GH-A9DA-01 15 85112988 85112988 C T UBE2Q2P1 RNA 0.26 TCGA-GH-A9DA-01 15 96877676 96877676 G A NR2F2 Missense_Mutation p.A272T 0.55 deleterious(0.01) possibly_damaging(0.595) TCGA-GH-A9DA-01 15 98417217 98417217 G A LINC00923 Missense_Mutation p.S100F 0.26 possibly_damaging(0.683) TCGA-GH-A9DA-01 16 10867265 10867265 C T TVP23A Missense_Mutation p.E120K 0.47 deleterious(0) probably_damaging(1) TCGA-GH-A9DA-01 16 30583560 30583560 C G ZNF688 5'UTR 0.35 TCGA-GH-A9DA-01 16 30939147 30939147 G C FBXL19 Missense_Mutation p.E184Q 0.27 tolerated(0.23) possibly_damaging(0.775) TCGA-GH-A9DA-01 16 57503648 57503648 C T POLR2C Silent p.D138D 0.31 TCGA-GH-A9DA-01 16 72818910 72818910 G A ZFHX3 3'UTR 0.28 TCGA-GH-A9DA-01 16 88787817 88787817 C T PIEZO1 Missense_Mutation p.E1809K 0.29 tolerated(0.5) benign(0.424) TCGA-GH-A9DA-01 17 19091383 19091383 G A SNORD3A RNA 0.11 TCGA-GH-A9DA-01 17 38978275 38978275 G C KRT10 Nonsense_Mutation p.S188* 0.30 TCGA-GH-A9DA-01 17 39766232 39766232 G C KRT16 Silent p.L459L 0.36 TCGA-GH-A9DA-01 17 5317411 5317411 G C NUP88 Missense_Mutation p.L171V 0.28 tolerated(0.64) benign(0.047) TCGA-GH-A9DA-01 17 66979863 66979863 C A ABCA9 Missense_Mutation p.A1543S 0.38 deleterious(0.02) possibly_damaging(0.468) TCGA-GH-A9DA-01 17 74676947 74676947 C T MXRA7 Intron 0.32 TCGA-GH-A9DA-01 17 8791680 8791680 C T PIK3R5 Missense_Mutation p.R475H 0.33 tolerated(0.07) probably_damaging(0.982) TCGA-GH-A9DA-01 18 30795551 30795551 C T CCDC178 Missense_Mutation p.E681K 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-GH-A9DA-01 18 5438044 5438044 C G EPB41L3 Missense_Mutation p.D199H 0.45 deleterious(0) probably_damaging(1) TCGA-GH-A9DA-01 19 19349067 19349067 G T NCAN Nonsense_Mutation p.E1086* 0.31 TCGA-GH-A9DA-01 19 40396088 40396088 G A FCGBP Missense_Mutation p.R2437W 0.33 possibly_damaging(0.898) TCGA-GH-A9DA-01 19 49142653 49142653 A G CA11 Missense_Mutation p.I235T 0.10 deleterious(0.01) benign(0.042) TCGA-GH-A9DA-01 19 49920455 49920455 G C CCDC155 Silent p.V493V 0.46 TCGA-GH-A9DA-01 19 52003326 52003326 C G SIGLEC12 Missense_Mutation p.R219P 0.35 deleterious(0) probably_damaging(1) TCGA-GH-A9DA-01 19 8651088 8651088 C A ADAMTS10 Missense_Mutation p.A860S 0.38 tolerated(0.42) benign(0.189) TCGA-GH-A9DA-01 19 9226279 9226279 T C OR7G1 Missense_Mutation p.H54R 0.25 deleterious(0.05) benign(0.037) TCGA-GH-A9DA-01 1 109526047 109526047 A G WDR47 Missense_Mutation p.V659A 0.26 tolerated(0.69) benign(0.001) TCGA-GH-A9DA-01 1 113098539 113098539 C G ST7L Missense_Mutation p.W449C 0.34 deleterious(0) probably_damaging(1) TCGA-GH-A9DA-01 1 12393407 12393407 C G VPS13D Missense_Mutation p.I2804M 0.37 benign(0.147) TCGA-GH-A9DA-01 1 1293925 1293925 A T MXRA8 5'Flank 0.33 TCGA-GH-A9DA-01 1 148017604 148017604 T C NBPF14 Missense_Mutation p.T233A 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-GH-A9DA-01 1 151206868 151206868 C T PIP5K1A Missense_Mutation p.P279S 0.29 deleterious(0) probably_damaging(0.949) TCGA-GH-A9DA-01 1 152191198 152191198 C A HRNR Missense_Mutation p.R969S 0.34 unknown(0) TCGA-GH-A9DA-01 1 15808799 15808799 C T CELA2B Silent p.N89N 0.36 TCGA-GH-A9DA-01 1 247769183 247769183 C T OR2G3 Missense_Mutation p.A99V 0.34 tolerated(1) benign(0.001) TCGA-GH-A9DA-01 1 46124780 46124780 C T GPBP1L1 5'UTR 0.24 TCGA-GH-A9DA-01 1 65895590 65895590 C T LEPROT Silent p.P46P 0.34 TCGA-GH-A9DA-01 20 1276936 1276936 C G SNPH Intron 0.50 TCGA-GH-A9DA-01 20 36640387 36640387 G C TTI1 Nonsense_Mutation p.S611* 0.20 TCGA-GH-A9DA-01 21 11047574 11047574 C G BAGE2 RNA 0.07 TCGA-GH-A9DA-01 22 30032739 30032739 G A NF2 Splice_Site p.X39_splice 0.80 TCGA-GH-A9DA-01 2 128770622 128770622 G A SAP130 Silent p.I268I 0.50 TCGA-GH-A9DA-01 2 179474184 179474184 C G TTN Missense_Mutation p.E17285Q 0.29 TCGA-GH-A9DA-01 2 190636456 190636456 C T ORMDL1 3'UTR 0.32 TCGA-GH-A9DA-01 2 242129539 242129539 G A ANO7 Missense_Mutation p.E75K 0.39 tolerated(0.73) benign(0.016) TCGA-GH-A9DA-01 2 242129545 242129545 G A ANO7 Missense_Mutation p.E77K 0.36 tolerated(0.24) benign(0.002) TCGA-GH-A9DA-01 2 27803275 27803275 G A C2orf16 Missense_Mutation p.R1279K 0.39 tolerated(0.12) benign(0.001) TCGA-GH-A9DA-01 2 67630613 67630613 C G ETAA1 Missense_Mutation p.Q267E 0.33 deleterious(0.01) possibly_damaging(0.641) TCGA-GH-A9DA-01 2 73675141 73675141 C G ALMS1 Nonsense_Mutation p.S495* 0.31 TCGA-GH-A9DA-01 3 10067771 10067771 G C FANCD2 5'Flank 0.51 TCGA-GH-A9DA-01 3 137484383 137484384 - A SOX14 3'UTR 0.19 TCGA-GH-A9DA-01 3 142242849 142242849 C A ATR Missense_Mutation p.D1380Y 0.51 tolerated(0.15) benign(0.211) TCGA-GH-A9DA-01 3 142242864 142242864 C T ATR Missense_Mutation p.E1375K 0.53 tolerated(0.48) benign(0.002) TCGA-GH-A9DA-01 3 151150966 151150966 T - MED12L 3'UTR 0.21 TCGA-GH-A9DA-01 3 152182812 152182812 A T MBNL1 3'UTR 0.06 TCGA-GH-A9DA-01 3 37778440 37778440 G C ITGA9 Missense_Mutation p.E734Q 0.38 tolerated(0.11) possibly_damaging(0.744) TCGA-GH-A9DA-01 3 42700874 42700874 G A ZBTB47 Missense_Mutation p.E343K 0.33 tolerated_low_confidence(0.06) unknown(0) TCGA-GH-A9DA-01 3 47030821 47030821 C T NBEAL2 Silent p.L141L 0.20 TCGA-GH-A9DA-01 3 47163404 47163404 G A SETD2 Silent p.L908L 0.24 TCGA-GH-A9DA-01 3 47164873 47164873 G A SETD2 Missense_Mutation p.S418F 0.41 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-GH-A9DA-01 3 56598132 56598132 G C CCDC66 Missense_Mutation p.E175Q 0.54 tolerated(0.09) benign(0.131) TCGA-GH-A9DA-01 3 57108558 57108558 G T SPATA12 3'UTR 0.43 TCGA-GH-A9DA-01 3 57109440 57109440 G C SPATA12 3'UTR 0.55 TCGA-GH-A9DA-01 3 89531077 89531077 C G EPHA3 3'UTR 0.65 TCGA-GH-A9DA-01 4 148993256 148993256 G T ARHGAP10 3'UTR 0.41 TCGA-GH-A9DA-01 4 164272144 164272144 G A NPY5R Missense_Mutation p.C240Y 0.56 tolerated(0.07) benign(0.163) TCGA-GH-A9DA-01 4 187560931 187560931 A T FAT1 Missense_Mutation p.I1196N 0.77 probably_damaging(0.987) TCGA-GH-A9DA-01 4 87728841 87728841 G A PTPN13 Missense_Mutation p.D2297N 0.53 deleterious(0.01) probably_damaging(1) TCGA-GH-A9DA-01 5 10260993 10260993 G A CCT5 Silent p.A321A 0.07 TCGA-GH-A9DA-01 5 125829538 125829538 C T GRAMD3 3'Flank 0.60 TCGA-GH-A9DA-01 5 135287086 135287086 G A LECT2 Intron 0.80 TCGA-GH-A9DA-01 5 140188972 140188972 C T PCDHA4 Missense_Mutation p.P734S 0.33 tolerated_low_confidence(0.05) benign(0.023) TCGA-GH-A9DA-01 5 140783750 140783750 G C PCDHGA9 Missense_Mutation p.D411H 0.52 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GH-A9DA-01 5 160973684 160973684 G A GABRB2 5'UTR 0.22 TCGA-GH-A9DA-01 5 169482308 169482308 G A DOCK2 Splice_Site p.X1405_splice 0.19 TCGA-GH-A9DA-01 5 175795896 175795896 C T ARL10 Nonsense_Mutation p.R158* 0.49 TCGA-GH-A9DA-01 5 70751731 70751731 G A BDP1 Silent p.V9V 0.32 TCGA-GH-A9DA-01 6 31752266 31752266 T C VARS Missense_Mutation p.E494G 0.68 deleterious(0) probably_damaging(0.998) TCGA-GH-A9DA-01 6 90402601 90402601 C T MDN1 Missense_Mutation p.R3383Q 0.81 possibly_damaging(0.848) TCGA-GH-A9DA-01 7 100481814 100481814 C T SRRT Silent p.L237L 0.37 TCGA-GH-A9DA-01 7 126173045 126173045 G A GRM8 Silent p.F797F 0.41 TCGA-GH-A9DA-01 7 136701166 136701166 C T CHRM2 3'UTR 0.33 TCGA-GH-A9DA-01 7 149148094 149148094 A T ZNF777 Missense_Mutation p.S361R 0.27 tolerated(0.06) possibly_damaging(0.901) TCGA-GH-A9DA-01 7 48016338 48016338 G T HUS1 Missense_Mutation p.P152T 0.21 deleterious(0.01) probably_damaging(0.933) TCGA-GH-A9DA-01 7 8791392 8791392 C G NXPH1 Missense_Mutation p.S270W 0.39 deleterious(0) probably_damaging(0.972) TCGA-GH-A9DA-01 8 109260880 109260880 G C EIF3E Missense_Mutation p.L18V 0.42 deleterious(0) probably_damaging(0.923) TCGA-GH-A9DA-01 8 116430666 116430666 G A TRPS1 Silent p.S905S 0.34 TCGA-GH-A9DA-01 8 144735531 144735531 G A ZNF623 3'UTR 0.37 TCGA-GH-A9DA-01 8 2795956 2795956 G C CSMD1 3'Flank 0.54 TCGA-GH-A9DA-01 8 39782288 39782288 C T IDO1 Missense_Mutation p.S235F 0.22 deleterious(0) probably_damaging(0.964) TCGA-GH-A9DA-01 8 73849514 73849514 G C KCNB2 Missense_Mutation p.E642Q 0.32 tolerated_low_confidence(0.31) possibly_damaging(0.782) TCGA-GH-A9DA-01 9 124440965 124440965 C G DAB2IP Missense_Mutation p.Q17E 0.44 tolerated(1) benign(0.029) TCGA-GH-A9DA-01 9 33113805 33113805 G C B4GALT1 Nonsense_Mutation p.S344* 0.41 TCGA-GH-A9DA-01 9 5897631 5897631 G A MLANA Missense_Mutation p.R51Q 0.37 deleterious(0.04) benign(0.048) TCGA-GH-A9DA-01 9 86585699 86585699 C T HNRNPK Missense_Mutation p.D382N 0.30 deleterious(0.04) benign(0.06) TCGA-GH-A9DA-01 X 129629407 129629407 T A RP1-274L7.1 Intron 0.30 TCGA-GH-A9DA-01 X 35820665 35820665 G C MAGEB16 Missense_Mutation p.A118P 0.20 tolerated(0.09) probably_damaging(0.927) TCGA-GH-A9DA-01 X 47004879 47004879 G A RBM10 5'UTR 0.41 TCGA-GH-A9DA-01 X 53627144 53627145 - A HUWE1 Frame_Shift_Ins p.K1033* 0.33 TCGA-GH-A9DA-01 X 57620690 57620690 C G ZXDB Missense_Mutation p.L737V 0.07 tolerated(0.08) benign(0.17) TCGA-GH-A9DA-01 X 64887689 64887689 C G MSN 5'UTR 0.29 TCGA-HG-A2PA-01 10 135271991 135271991 G C SPRN Intron 0.18 TCGA-HG-A2PA-01 10 20506461 20506461 G T PLXDC2 Missense_Mutation p.R410I 0.21 tolerated(0.16) benign(0.352) TCGA-HG-A2PA-01 10 4877913 4877913 G T AKR1E2 Missense_Mutation p.C124F 0.19 tolerated_low_confidence(0.54) benign(0.139) TCGA-HG-A2PA-01 10 49392882 49392882 G A FRMPD2 Missense_Mutation p.P801L 0.11 tolerated(0.4) possibly_damaging(0.876) TCGA-HG-A2PA-01 10 5957376 5957376 G A FBXO18 Silent p.K520K 0.17 TCGA-HG-A2PA-01 11 113660609 113660609 G C ATF4P4 RNA 0.21 TCGA-HG-A2PA-01 11 55563530 55563530 C T OR5D14 Missense_Mutation p.R167W 0.16 deleterious(0) possibly_damaging(0.773) TCGA-HG-A2PA-01 11 695769 695769 G C TMEM80 Missense_Mutation p.R6P 0.44 deleterious_low_confidence(0.03) unknown(0) TCGA-HG-A2PA-01 11 72404385 72404385 G A ARAP1 Silent p.L1313L 0.13 TCGA-HG-A2PA-01 11 94587123 94587123 A G AMOTL1 Missense_Mutation p.E607G 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-HG-A2PA-01 12 101493406 101493406 C A ANO4 Missense_Mutation p.P651H 0.21 tolerated(0.11) benign(0.003) TCGA-HG-A2PA-01 12 49439723 49439723 G A KMT2D Missense_Mutation p.P1574L 0.13 possibly_damaging(0.738) TCGA-HG-A2PA-01 12 57488487 57488487 G A NAB2 Missense_Mutation p.E521K 0.24 deleterious_low_confidence(0.01) benign(0.035) TCGA-HG-A2PA-01 12 78515749 78515749 C G NAV3 Missense_Mutation p.S1260C 0.36 tolerated(0.05) possibly_damaging(0.547) TCGA-HG-A2PA-01 14 23398532 23398532 G A PRMT5 Silent p.R13R 0.11 TCGA-HG-A2PA-01 15 45900423 45900423 G T BLOC1S6 3'UTR 0.32 TCGA-HG-A2PA-01 15 51748511 51748511 T C DMXL2 Missense_Mutation p.Q2777R 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-HG-A2PA-01 15 76452473 76452473 G C C15orf27 Missense_Mutation p.W140C 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-HG-A2PA-01 15 99465401 99465401 C T IGF1R Silent p.V742V 0.12 TCGA-HG-A2PA-01 16 1741844 1741844 G A HN1L Missense_Mutation p.G65E 0.21 deleterious(0) probably_damaging(0.984) TCGA-HG-A2PA-01 16 2293105 2293105 C T ECI1 Silent p.P228P 0.31 TCGA-HG-A2PA-01 16 3406533 3406533 T C OR2C1 Missense_Mutation p.V198A 0.14 tolerated(0.28) benign(0.393) TCGA-HG-A2PA-01 16 55719100 55719100 C T SLC6A2 Silent p.I230I 0.07 TCGA-HG-A2PA-01 16 89757893 89757893 G A CDK10 Missense_Mutation p.R92H 0.29 deleterious(0.04) possibly_damaging(0.788) TCGA-HG-A2PA-01 16 9857475 9857475 C T GRIN2A Missense_Mutation p.R1309Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-HG-A2PA-01 17 10427875 10427875 G A MYH2 Missense_Mutation p.R1695W 0.18 deleterious(0) benign(0.008) TCGA-HG-A2PA-01 17 1540334 1540334 C T SCARF1 Missense_Mutation p.V463M 0.19 tolerated(0.12) benign(0.043) TCGA-HG-A2PA-01 17 3957418 3957418 A G ZZEF1 Silent p.I1789I 0.07 TCGA-HG-A2PA-01 17 41142345 41142345 A G RUNDC1 Missense_Mutation p.S290G 0.14 deleterious(0.02) benign(0.003) TCGA-HG-A2PA-01 17 42327684 42327684 C G SLC4A1 3'UTR 0.16 TCGA-HG-A2PA-01 17 8021319 8021319 A G ALOXE3 Missense_Mutation p.L129P 0.15 tolerated_low_confidence(0.09) benign(0.367) TCGA-HG-A2PA-01 18 43579406 43579406 T C PSTPIP2 Missense_Mutation p.E171G 0.20 deleterious(0) probably_damaging(0.947) TCGA-HG-A2PA-01 18 44561176 44561176 C G TCEB3B Missense_Mutation p.E154Q 0.24 tolerated(0.15) benign(0.007) TCGA-HG-A2PA-01 19 15580365 15580365 G A PGLYRP2 Intron 0.24 TCGA-HG-A2PA-01 19 50865026 50865026 C T NAPSA Missense_Mutation p.R121Q 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-HG-A2PA-01 19 53473389 53473389 T C ZNF702P RNA 0.15 TCGA-HG-A2PA-01 19 57065086 57065086 T G ZFP28 Missense_Mutation p.F311C 0.21 tolerated(0.11) possibly_damaging(0.635) TCGA-HG-A2PA-01 19 8661908 8661908 C T ADAMTS10 Missense_Mutation p.G335S 0.29 deleterious(0.01) probably_damaging(0.97) TCGA-HG-A2PA-01 1 161643336 161643336 G A FCGR2B Intron 0.21 TCGA-HG-A2PA-01 1 176857336 176857336 A G ASTN1 Missense_Mutation p.L982S 0.18 deleterious(0) probably_damaging(0.982) TCGA-HG-A2PA-01 1 186050401 186050401 A G HMCN1 Missense_Mutation p.K2888E 0.25 benign(0.101) TCGA-HG-A2PA-01 1 197901077 197901077 A C LHX9 3'Flank 0.25 TCGA-HG-A2PA-01 1 22169400 22169400 G C HSPG2 Missense_Mutation p.Q2925E 0.23 benign(0.102) TCGA-HG-A2PA-01 1 23519579 23519579 C A HTR1D Nonstop_Mutation p.*378Yext*14 0.22 TCGA-HG-A2PA-01 1 27720959 27720959 C T GPR3 Silent p.I219I 0.30 TCGA-HG-A2PA-01 1 27733015 27733015 G C WASF2 3'UTR 0.22 TCGA-HG-A2PA-01 1 52238276 52238276 G A OSBPL9 Splice_Site p.X361_splice 0.20 TCGA-HG-A2PA-01 1 71535038 71535038 A C ZRANB2 Missense_Mutation p.S231A 0.22 deleterious(0.02) unknown(0) TCGA-HG-A2PA-01 20 19666001 19666001 C T SLC24A3 Silent p.T440T 0.22 TCGA-HG-A2PA-01 20 24523867 24523867 C T SYNDIG1 Missense_Mutation p.A45V 0.25 tolerated(0.15) benign(0.002) TCGA-HG-A2PA-01 20 34025308 34025308 G A GDF5 Missense_Mutation p.P134L 0.11 tolerated(0.09) possibly_damaging(0.57) TCGA-HG-A2PA-01 20 3677954 3677954 G A SIGLEC1 Nonsense_Mutation p.Q720* 0.39 TCGA-HG-A2PA-01 20 5904601 5904601 T C CHGB Missense_Mutation p.V604A 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-HG-A2PA-01 22 38151132 38151132 G A TRIOBP Missense_Mutation p.D1838N 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-HG-A2PA-01 22 51117841 51117841 T C SHANK3 Silent p.C290C 0.25 TCGA-HG-A2PA-01 2 178098810 178098810 C T NFE2L2 Missense_Mutation p.E79K 0.25 deleterious(0) probably_damaging(0.999) TCGA-HG-A2PA-01 2 179584117 179584117 G T TTN Silent p.A8000A 0.23 TCGA-HG-A2PA-01 2 209358187 209358187 C T PTH2R Missense_Mutation p.P486S 0.26 tolerated(0.64) benign(0.008) TCGA-HG-A2PA-01 2 212530163 212530163 C T ERBB4 Missense_Mutation p.G586S 0.20 deleterious(0.03) probably_damaging(0.935) TCGA-HG-A2PA-01 2 232234743 232234743 A G ARMC9 RNA 0.16 TCGA-HG-A2PA-01 2 233722332 233722332 G A GIGYF2 3'UTR 0.18 TCGA-HG-A2PA-01 2 242149012 242149012 C T ANO7 Missense_Mutation p.R495C 0.21 tolerated(0.1) possibly_damaging(0.849) TCGA-HG-A2PA-01 2 31423333 31423333 C A CAPN14 Missense_Mutation p.C237F 0.12 deleterious(0) probably_damaging(0.967) TCGA-HG-A2PA-01 2 39008896 39008896 C T GEMIN6 Silent p.D122D 0.19 TCGA-HG-A2PA-01 2 79876486 79876486 C G CTNNA2 Intron 0.25 TCGA-HG-A2PA-01 3 151155402 151155402 C T IGSF10 Missense_Mutation p.R2316Q 0.23 deleterious(0.04) possibly_damaging(0.595) TCGA-HG-A2PA-01 3 167196652 167196652 T A WDR49 3'UTR 0.29 TCGA-HG-A2PA-01 3 178916930 178916930 G T PIK3CA Missense_Mutation p.G106V 0.20 deleterious(0.01) probably_damaging(1) TCGA-HG-A2PA-01 3 186507853 186507854 CC - RFC4 Splice_Site p.X333_splice 0.09 TCGA-HG-A2PA-01 3 45132717 45132717 G A CDCP1 Silent p.S647S 0.15 TCGA-HG-A2PA-01 3 45132718 45132718 C G CDCP1 Missense_Mutation p.S647T 0.15 tolerated(0.15) benign(0.234) TCGA-HG-A2PA-01 3 97593286 97593286 T C CRYBG3 Missense_Mutation p.L1083S 0.28 TCGA-HG-A2PA-01 4 108575873 108575873 C T PAPSS1 Missense_Mutation p.C360Y 0.09 tolerated(0.34) probably_damaging(0.985) TCGA-HG-A2PA-01 4 62761547 62761547 C G LPHN3 Missense_Mutation p.Q560E 0.14 tolerated(0.1) possibly_damaging(0.547) TCGA-HG-A2PA-01 4 96762259 96762259 G T PDHA2 Missense_Mutation p.D320Y 0.54 deleterious(0) probably_damaging(0.976) TCGA-HG-A2PA-01 5 102895948 102895948 A G NUDT12 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HG-A2PA-01 5 127664317 127664317 C T FBN2 Intron 0.26 TCGA-HG-A2PA-01 5 170722906 170722906 A C RANBP17 Silent p.R1020R 0.38 TCGA-HG-A2PA-01 6 109752404 109752404 C T PPIL6 Missense_Mutation p.A126T 0.20 tolerated(0.07) probably_damaging(0.978) TCGA-HG-A2PA-01 6 135358772 135358772 C A HBS1L Intron 0.11 TCGA-HG-A2PA-01 6 147680232 147680232 A G STXBP5 Missense_Mutation p.N773S 0.20 tolerated(0.31) benign(0.013) TCGA-HG-A2PA-01 6 152510392 152510392 G A SYNE1 Missense_Mutation p.H7766Y 0.22 benign(0.396) TCGA-HG-A2PA-01 6 170162585 170162585 T C ERMARD Silent p.F306F 0.10 TCGA-HG-A2PA-01 6 27839917 27839917 G A HIST1H3I Silent p.T59T 0.09 TCGA-HG-A2PA-01 6 28104731 28104731 G C ZKSCAN8 5'Flank 0.21 TCGA-HG-A2PA-01 6 52617759 52617759 C T GSTA2 Missense_Mutation p.G103S 0.14 tolerated(0.44) benign(0.004) TCGA-HG-A2PA-01 7 111846792 111846792 G - ZNF277 Frame_Shift_Del p.A9Lfs*19 0.28 TCGA-HG-A2PA-01 7 11419307 11419307 C T THSD7A Missense_Mutation p.D1514N 0.27 tolerated(0.5) benign(0.349) TCGA-HG-A2PA-01 7 128486419 128486419 C T FLNC Silent p.G1343G 0.18 TCGA-HG-A2PA-01 7 44579801 44579801 C T NPC1L1 Silent p.K65K 0.14 TCGA-HG-A2PA-01 8 125047648 125047648 C T FER1L6 Missense_Mutation p.S806F 0.09 deleterious(0.02) possibly_damaging(0.498) TCGA-HG-A2PA-01 8 135490633 135490633 C T ZFAT 3'UTR 0.16 TCGA-HG-A2PA-01 8 30969312 30969312 C G WRN Missense_Mutation p.T757R 0.24 tolerated(0.09) benign(0.374) TCGA-HG-A2PA-01 8 94800105 94800105 C T TMEM67 Silent p.N482N 0.07 TCGA-HG-A2PA-01 9 133759698 133759698 G A ABL1 Missense_Mutation p.R693Q 0.25 tolerated_low_confidence(0.45) probably_damaging(0.99) TCGA-HG-A2PA-01 9 86421236 86421236 T C GKAP1 Missense_Mutation p.Q66R 0.31 deleterious(0) possibly_damaging(0.812) TCGA-HG-A2PA-01 9 86421237 86421237 G T GKAP1 Missense_Mutation p.Q66K 0.33 tolerated(0.06) possibly_damaging(0.693) TCGA-HG-A2PA-01 X 107418434 107418434 T C COL4A6 Missense_Mutation p.N949D 0.30 benign(0.036) TCGA-HG-A2PA-01 X 30269213 30269213 G A MAGEB1 Silent p.L201L 0.12 TCGA-HG-A2PA-01 X 69722757 69722757 G A DLG3 3'UTR 0.14 TCGA-HG-A2PA-01 X 70779275 70779275 G A OGT Silent p.E587E 0.17 TCGA-HG-A2PA-01 X 75649283 75649283 G A MAGEE1 Silent p.V320V 0.21 TCGA-HG-A2PA-01 X 75649307 75649307 G A MAGEE1 Silent p.L328L 0.20 TCGA-HG-A2PA-01 X 83724332 83724332 T C HDX Silent p.A133A 0.12 TCGA-HG-A9SC-01 10 121411241 121411241 C T BAG3 Silent p.D18D 0.08 TCGA-HG-A9SC-01 10 135015095 135015095 G A KNDC1 Missense_Mutation p.R1027Q 0.34 tolerated(0.83) benign(0.006) TCGA-HG-A9SC-01 10 43881970 43881970 T G HNRNPF 3'UTR 0.30 TCGA-HG-A9SC-01 10 71175863 71175863 C T TACR2 Missense_Mutation p.V73I 0.23 deleterious(0.02) benign(0.122) TCGA-HG-A9SC-01 10 75568156 75568156 A G NDST2 5'UTR 0.29 TCGA-HG-A9SC-01 10 75882616 75882616 G A AP3M1 3'UTR 0.37 TCGA-HG-A9SC-01 11 33589741 33589741 C T KIAA1549L Missense_Mutation p.R1103W 0.25 deleterious(0) probably_damaging(1) TCGA-HG-A9SC-01 11 617684 617684 G A CDHR5 Silent p.D735D 0.40 TCGA-HG-A9SC-01 11 6742371 6742371 C T GVINP1 RNA 0.29 TCGA-HG-A9SC-01 11 67759101 67759101 C G UNC93B1 Missense_Mutation p.R569S 0.33 tolerated_low_confidence(0.13) benign(0.001) TCGA-HG-A9SC-01 11 77727973 77727973 T C KCTD14 Missense_Mutation p.Y145C 0.23 deleterious(0) probably_damaging(1) TCGA-HG-A9SC-01 12 115109690 115109690 C T TBX3 Missense_Mutation p.G730S 0.32 deleterious(0) probably_damaging(0.966) TCGA-HG-A9SC-01 12 31944230 31944230 A T H3F3C 3'UTR 0.08 TCGA-HG-A9SC-01 12 44187675 44187675 G A TWF1 3'Flank 0.22 TCGA-HG-A9SC-01 12 54943739 54943740 - C PDE1B Frame_Shift_Ins p.K29Qfs*6 0.29 TCGA-HG-A9SC-01 13 46930599 46930599 A G KIAA0226L Missense_Mutation p.F433S 0.39 tolerated(0.22) benign(0.086) TCGA-HG-A9SC-01 13 88329812 88329812 G A SLITRK5 Silent p.T723T 0.28 TCGA-HG-A9SC-01 14 106436788 106436788 G A ADAM6 RNA 0.33 TCGA-HG-A9SC-01 14 63842123 63842123 C T PPP2R5E 3'UTR 0.24 TCGA-HG-A9SC-01 14 64408467 64408467 G A SYNE2 Missense_Mutation p.V66I 0.28 probably_damaging(0.993) TCGA-HG-A9SC-01 15 20642681 20642681 G A HERC2P3 RNA 0.18 TCGA-HG-A9SC-01 15 23261919 23261919 G A GOLGA8I Missense_Mutation p.R344Q 0.16 tolerated(0.59) benign(0.013) TCGA-HG-A9SC-01 15 25924615 25924615 C T ATP10A Missense_Mutation p.R1458Q 0.27 tolerated_low_confidence(0.47) benign(0.005) TCGA-HG-A9SC-01 15 52841777 52841777 C T ARPP19 3'UTR 0.13 TCGA-HG-A9SC-01 15 56388494 56388494 T C RFX7 Missense_Mutation p.I478V 0.47 tolerated(0.07) probably_damaging(0.99) TCGA-HG-A9SC-01 15 59911690 59911690 A G GCNT3 Missense_Mutation p.D418G 0.22 tolerated(0.16) possibly_damaging(0.792) TCGA-HG-A9SC-01 15 89169544 89169544 G T AEN Missense_Mutation p.R35L 0.27 deleterious(0) probably_damaging(0.997) TCGA-HG-A9SC-01 15 91436385 91436385 C T FES Nonsense_Mutation p.Q628* 0.27 TCGA-HG-A9SC-01 16 12662393 12662393 C T SNX29 Silent p.N783N 0.30 TCGA-HG-A9SC-01 16 28840799 28840799 T C ATXN2L Silent p.S273S 0.26 TCGA-HG-A9SC-01 16 3807954 3807954 G A CREBBP Silent p.D1155D 0.17 TCGA-HG-A9SC-01 16 3823804 3823804 C A CREBBP Missense_Mutation p.G804V 0.32 probably_damaging(0.936) TCGA-HG-A9SC-01 17 16612924 16612926 AAG - CCDC144A In_Frame_Del p.E519del 0.31 TCGA-HG-A9SC-01 17 3850716 3850716 G A ATP2A3 Missense_Mutation p.T355M 0.14 deleterious(0) probably_damaging(1) TCGA-HG-A9SC-01 17 38573116 38573116 A T TOP2A Missense_Mutation p.I18K 0.21 tolerated(0.85) benign(0.001) TCGA-HG-A9SC-01 17 7385733 7385733 G A SLC35G6 Missense_Mutation p.V144I 0.42 tolerated(0.87) benign(0.002) TCGA-HG-A9SC-01 17 77808927 77808927 G A CBX4 Nonsense_Mutation p.Q172* 0.31 TCGA-HG-A9SC-01 18 11753828 11753828 A C GNAL Missense_Mutation p.I170L 0.27 tolerated(0.1) possibly_damaging(0.469) TCGA-HG-A9SC-01 18 48255865 48255865 G A MAPK4 Missense_Mutation p.A469T 0.42 tolerated_low_confidence(0.49) benign(0.001) TCGA-HG-A9SC-01 19 15296300 15296300 G A NOTCH3 Silent p.G714G 0.50 TCGA-HG-A9SC-01 19 19748816 19748816 C T GMIP Silent p.A280A 0.60 TCGA-HG-A9SC-01 19 21132135 21132135 C A ZNF85 Missense_Mutation p.T272N 0.41 tolerated(0.65) benign(0.006) TCGA-HG-A9SC-01 19 40172709 40172709 G A AC093063.3 5'Flank 0.32 TCGA-HG-A9SC-01 19 41522782 41522782 C T CYP2B6 3'UTR 0.26 TCGA-HG-A9SC-01 19 45898783 45898783 G C PPP1R13L Missense_Mutation p.P422R 0.21 deleterious(0.03) possibly_damaging(0.804) TCGA-HG-A9SC-01 19 49439314 49439314 C A DHDH Missense_Mutation p.H76Q 0.21 deleterious(0.01) benign(0.049) TCGA-HG-A9SC-01 19 49850494 49850494 G C TEAD2 Missense_Mutation p.L292V 0.14 deleterious(0) probably_damaging(0.999) TCGA-HG-A9SC-01 19 50165494 50165494 G A IRF3 Silent p.S231S 0.23 TCGA-HG-A9SC-01 19 50335586 50335586 C T MED25 Missense_Mutation p.R466W 0.11 deleterious(0) probably_damaging(0.985) TCGA-HG-A9SC-01 19 53005093 53005093 A G ZNF578 5'UTR 0.29 TCGA-HG-A9SC-01 19 58049938 58049938 C G ZNF549 Missense_Mutation p.I522M 0.13 deleterious(0.01) probably_damaging(0.97) TCGA-HG-A9SC-01 1 113231676 113231676 G A MOV10 Missense_Mutation p.R86Q 0.40 tolerated(0.6) benign(0.001) TCGA-HG-A9SC-01 1 145281380 145281380 C T NOTCH2NL Nonsense_Mutation p.Q104* 0.05 TCGA-HG-A9SC-01 1 149859267 149859267 G A HIST2H2AB Missense_Mutation p.A67V 0.05 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-HG-A9SC-01 1 159805155 159805155 T C SLAMF8 3'UTR 0.17 TCGA-HG-A9SC-01 1 15987460 15987460 G A RSC1A1 Missense_Mutation p.S366N 0.28 tolerated(0.12) probably_damaging(0.997) TCGA-HG-A9SC-01 1 16342167 16342167 G C HSPB7 Missense_Mutation p.L141V 0.40 deleterious(0) probably_damaging(0.993) TCGA-HG-A9SC-01 1 171121187 171121187 C T FMO6P Silent p.I322I 0.21 TCGA-HG-A9SC-01 1 193202166 193202171 GAAAAT - CDC73 In_Frame_Del p.N401_E402del 0.28 TCGA-HG-A9SC-01 1 200939231 200939231 C T KIF21B 3'Flank 0.33 TCGA-HG-A9SC-01 1 216061876 216061876 A G USH2A Silent p.L2705L 0.55 TCGA-HG-A9SC-01 1 243589745 243589745 C T SDCCAG8 Missense_Mutation p.L624F 0.53 deleterious(0.03) possibly_damaging(0.73) TCGA-HG-A9SC-01 1 7887328 7887328 C T PER3 Missense_Mutation p.P772L 0.30 tolerated(0.1) possibly_damaging(0.908) TCGA-HG-A9SC-01 1 84412820 84412820 C A TTLL7 Missense_Mutation p.A165S 0.33 tolerated(0.06) possibly_damaging(0.745) TCGA-HG-A9SC-01 1 900528 900528 C T KLHL17 Missense_Mutation p.P629L 0.32 deleterious(0.03) unknown(0) TCGA-HG-A9SC-01 20 24646429 24646429 G A SYNDIG1 3'UTR 0.24 TCGA-HG-A9SC-01 20 45003925 45003925 C T ELMO2 Missense_Mutation p.E339K 0.17 tolerated(0.2) benign(0.34) TCGA-HG-A9SC-01 20 54573109 54573109 A - CBLN4 3'UTR 0.27 TCGA-HG-A9SC-01 21 30339031 30339031 G A LTN1 Silent p.V640V 0.52 TCGA-HG-A9SC-01 21 42824657 42824657 G A MX1 Missense_Mutation p.G540D 0.57 tolerated(0.71) benign(0.012) TCGA-HG-A9SC-01 21 42870064 42870064 G C TMPRSS2 Missense_Mutation p.S36R 0.15 tolerated_low_confidence(0.2) benign(0.032) TCGA-HG-A9SC-01 21 43533753 43533753 G A UMODL1 Silent p.A853A 0.24 TCGA-HG-A9SC-01 22 16287378 16287378 A C POTEH Missense_Mutation p.Y170D 0.27 deleterious(0) probably_damaging(0.998) TCGA-HG-A9SC-01 22 32110549 32110549 G C PRR14L Silent p.S1092S 0.47 TCGA-HG-A9SC-01 22 39178710 39178710 A T DNAL4 Missense_Mutation p.D9E 0.23 tolerated(0.98) benign(0.001) TCGA-HG-A9SC-01 2 136872786 136872786 G A CXCR4 Missense_Mutation p.L242F 0.35 deleterious(0) probably_damaging(1) TCGA-HG-A9SC-01 2 168103011 168103011 T A XIRP2 Silent p.I1703I 0.35 TCGA-HG-A9SC-01 2 179449452 179449452 C T TTN Missense_Mutation p.R21639Q 0.48 TCGA-HG-A9SC-01 2 202357335 202357336 - T ALS2CR11 Frame_Shift_Ins p.N1243Kfs*9 0.13 TCGA-HG-A9SC-01 2 27501179 27501179 C T DNAJC5G Nonsense_Mutation p.Q167* 0.22 TCGA-HG-A9SC-01 2 29551213 29551213 C G ALK Intron 0.30 TCGA-HG-A9SC-01 2 6112317 6112317 G A DKFZP761K2322 Silent p.P87P 0.09 TCGA-HG-A9SC-01 2 9580672 9580672 A G CPSF3 Silent p.A271A 0.30 TCGA-HG-A9SC-01 3 156645316 156645316 A C LEKR1 3'Flank 0.24 TCGA-HG-A9SC-01 3 185866567 185866567 G A DGKG 3'UTR 0.27 TCGA-HG-A9SC-01 3 196736578 196736578 C G MFI2 Missense_Mutation p.G479A 0.17 tolerated(0.28) benign(0.434) TCGA-HG-A9SC-01 3 3888333 3888334 - A LRRN1 Frame_Shift_Ins p.T672Nfs*8 0.18 TCGA-HG-A9SC-01 3 48501914 48501914 C T ATRIP Silent p.C487C 0.08 TCGA-HG-A9SC-01 3 6903398 6903398 C A GRM7 Missense_Mutation p.T108N 0.36 deleterious(0) probably_damaging(0.958) TCGA-HG-A9SC-01 3 98002173 98002173 C T OR5H2 Missense_Mutation p.R148W 0.29 tolerated(0.24) benign(0.005) TCGA-HG-A9SC-01 4 123663700 123663700 A C BBS12 Missense_Mutation p.N218T 0.23 tolerated(0.26) benign(0.003) TCGA-HG-A9SC-01 4 159789351 159789351 G T FNIP2 Silent p.L521L 0.35 TCGA-HG-A9SC-01 4 187525580 187525580 G C FAT1 Nonsense_Mutation p.S3500* 0.58 TCGA-HG-A9SC-01 4 2210031 2210031 C T POLN Missense_Mutation p.G133R 0.39 deleterious(0.04) benign(0.063) TCGA-HG-A9SC-01 4 70074066 70074066 T A UGT2B11 Intron 0.27 TCGA-HG-A9SC-01 5 140174620 140174620 G C PCDHA2 Missense_Mutation p.W24S 0.32 deleterious_low_confidence(0.01) benign(0.163) TCGA-HG-A9SC-01 5 179044566 179044566 C T HNRNPH1 Missense_Mutation p.A336T 0.09 deleterious(0.02) possibly_damaging(0.906) TCGA-HG-A9SC-01 5 79854900 79854900 G T ANKRD34B Missense_Mutation p.S313R 0.21 tolerated(0.54) benign(0.004) TCGA-HG-A9SC-01 6 146756761 146756761 A T GRM1 3'UTR 0.41 TCGA-HG-A9SC-01 6 2678473 2678473 G A MYLK4 Missense_Mutation p.L341F 0.24 deleterious(0) probably_damaging(0.998) TCGA-HG-A9SC-01 6 33141678 33141678 C T COL11A2 Missense_Mutation p.R766Q 0.24 benign(0.417) TCGA-HG-A9SC-01 6 41204350 41204350 C A TREML4 3'UTR 0.45 TCGA-HG-A9SC-01 6 44122616 44122616 A C TMEM63B Missense_Mutation p.Q832P 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.513) TCGA-HG-A9SC-01 6 45296196 45296196 C A RUNX2 5'UTR 0.31 TCGA-HG-A9SC-01 6 56471465 56471473 GGAGAAGCC - DST Intron 0.22 TCGA-HG-A9SC-01 7 107674788 107674788 T C LAMB4 Silent p.K1561K 0.23 TCGA-HG-A9SC-01 7 124465387 124465387 A T POT1 Missense_Mutation p.S571T 0.20 tolerated(0.12) possibly_damaging(0.767) TCGA-HG-A9SC-01 7 131185943 131185944 - A PODXL 3'Flank 0.29 TCGA-HG-A9SC-01 7 137330273 137330273 C T DGKI Missense_Mutation p.R250H 0.41 tolerated(0.25) probably_damaging(0.998) TCGA-HG-A9SC-01 7 148978933 148978933 C T ZNF783 Silent p.P380P 0.42 TCGA-HG-A9SC-01 7 57187605 57187605 G A ZNF479 Missense_Mutation p.S506L 0.26 deleterious(0.01) benign(0.162) TCGA-HG-A9SC-01 8 143602271 143602271 C A BAI1 Silent p.T1003T 0.31 TCGA-HG-A9SC-01 8 16978382 16978382 T A MICU3 3'UTR 0.65 TCGA-HG-A9SC-01 8 1876710 1876710 C T ARHGEF10 Missense_Mutation p.P939S 0.17 deleterious(0.04) probably_damaging(1) TCGA-HG-A9SC-01 8 41788202 41788202 G A KAT6A 3'UTR 0.20 TCGA-HG-A9SC-01 8 77618251 77618251 C T ZFHX4 Missense_Mutation p.T643I 0.07 possibly_damaging(0.702) TCGA-HG-A9SC-01 8 95683738 95683738 C T ESRP1 Missense_Mutation p.P431S 0.24 tolerated(0.21) benign(0.088) TCGA-HG-A9SC-01 9 139402783 139402783 G A NOTCH1 Nonsense_Mutation p.Q1076* 0.81 TCGA-HG-A9SC-01 9 16417360 16417360 C T BNC2 3'UTR 0.18 TCGA-HG-A9SC-01 X 125299292 125299292 T G DCAF12L2 Missense_Mutation p.T206P 0.32 deleterious(0.02) probably_damaging(0.953) TCGA-HG-A9SC-01 X 128696613 128696613 A G OCRL Missense_Mutation p.H365R 0.32 deleterious(0.02) probably_damaging(0.967) TCGA-HG-A9SC-01 X 138724856 138724856 A C MCF2 Intron 0.35 TCGA-HG-A9SC-01 X 30577686 30577686 C G CXorf21 Missense_Mutation p.E263Q 0.34 deleterious(0.01) possibly_damaging(0.841) TCGA-HG-A9SC-01 X 47104799 47104799 G A USP11 Missense_Mutation p.V773M 0.32 tolerated(0.13) benign(0.065) TCGA-HG-A9SC-01 X 48372689 48372689 C T PORCN Missense_Mutation p.L261F 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-HG-A9SC-01 X 48460488 48460488 G T WDR13 Nonsense_Mutation p.E350* 0.29 TCGA-HG-A9SC-01 X 51151488 51151488 C T CXorf67 3'UTR 0.33 TCGA-HG-A9SC-01 X 53559941 53559941 C T HUWE1 3'UTR 0.33 TCGA-HG-A9SC-01 X 55289705 55289705 C A PAGE3 Nonsense_Mutation p.E58* 0.05 TCGA-HG-A9SC-01 X 91874616 91874616 A G PCDH11X 3'UTR 0.21 TCGA-HG-A9SC-01 X 99946108 99946108 G C SYTL4 Missense_Mutation p.S213C 0.33 deleterious(0.05) possibly_damaging(0.599) TCGA-HM-A3JJ-01 10 133754169 133754169 C T PPP2R2D Nonsense_Mutation p.R119* 0.19 TCGA-HM-A3JJ-01 10 35894411 35894411 T A GJD4 5'UTR 0.09 TCGA-HM-A3JJ-01 10 43315978 43315978 G A BMS1 Nonsense_Mutation p.W931* 0.18 TCGA-HM-A3JJ-01 10 75566109 75566109 C T NDST2 Missense_Mutation p.E458K 0.26 deleterious(0.03) benign(0.26) TCGA-HM-A3JJ-01 11 1266823 1266823 G A MUC5B Missense_Mutation p.G2905R 0.29 unknown(0) TCGA-HM-A3JJ-01 11 6129291 6129291 G T OR56B4 Missense_Mutation p.A95S 0.16 tolerated(0.63) benign(0.113) TCGA-HM-A3JJ-01 12 126942643 126942643 C T RP5-944M2.3 RNA 0.23 TCGA-HM-A3JJ-01 12 132811455 132811455 G A GALNT9 Missense_Mutation p.T100M 0.21 tolerated_low_confidence(0.08) possibly_damaging(0.895) TCGA-HM-A3JJ-01 12 6559976 6559976 G A CD27 Intron 0.22 TCGA-HM-A3JJ-01 12 81111046 81111046 C T MYF5 Silent p.L68L 0.07 TCGA-HM-A3JJ-01 14 100801285 100801285 C T WARS Missense_Mutation p.R448Q 0.20 deleterious(0.02) benign(0.032) TCGA-HM-A3JJ-01 15 25430712 25430712 C T SNORD115-10 5'Flank 0.24 TCGA-HM-A3JJ-01 15 79187244 79187245 AA - MORF4L1 Frame_Shift_Del p.K335Vfs*16 0.20 TCGA-HM-A3JJ-01 16 1116497 1116497 G A RP11-161M6.5 RNA 0.27 TCGA-HM-A3JJ-01 16 55361589 55361589 C T IRX6 Missense_Mutation p.R169C 0.16 deleterious(0) probably_damaging(0.995) TCGA-HM-A3JJ-01 17 2282773 2282773 G A SGSM2 Missense_Mutation p.D1039N 0.17 tolerated(0.1) benign(0.009) TCGA-HM-A3JJ-01 17 39635992 39635992 C G KRT35 Missense_Mutation p.E171D 0.33 deleterious(0.04) benign(0.119) TCGA-HM-A3JJ-01 17 45099282 45099282 G C RP11-156P1.3 Intron 0.14 TCGA-HM-A3JJ-01 17 46005260 46005260 A G SP2 3'UTR 0.36 TCGA-HM-A3JJ-01 17 56051198 56051198 A G VEZF1 3'UTR 0.38 TCGA-HM-A3JJ-01 17 56432171 56432171 G A RNF43 3'UTR 0.45 TCGA-HM-A3JJ-01 17 64783042 64783042 G A PRKCA Missense_Mutation p.V555I 0.34 tolerated(0.07) benign(0.147) TCGA-HM-A3JJ-01 17 71281845 71281845 C T CDC42EP4 Silent p.Q265Q 0.31 TCGA-HM-A3JJ-01 17 78389025 78389025 G C ENDOV Missense_Mutation p.E11Q 0.20 deleterious(0.04) benign(0.094) TCGA-HM-A3JJ-01 18 21474930 21474930 C T LAMA3 Missense_Mutation p.R1841C 0.17 possibly_damaging(0.901) TCGA-HM-A3JJ-01 18 28934892 28934892 C T DSG1 Silent p.I911I 0.34 TCGA-HM-A3JJ-01 18 54814646 54814646 G A BOD1L2 Missense_Mutation p.D35N 0.10 tolerated(0.13) possibly_damaging(0.578) TCGA-HM-A3JJ-01 18 72999335 72999335 C T TSHZ1 Missense_Mutation p.P613L 0.20 tolerated(0.31) benign(0.001) TCGA-HM-A3JJ-01 19 33095261 33095261 G A ANKRD27 Missense_Mutation p.H855Y 0.12 tolerated(0.15) benign(0.415) TCGA-HM-A3JJ-01 19 36832078 36832078 C T ZFP14 Missense_Mutation p.R217Q 0.12 tolerated(0.94) probably_damaging(0.982) TCGA-HM-A3JJ-01 19 3753880 3753880 G A APBA3 Silent p.A298A 0.23 TCGA-HM-A3JJ-01 19 4354349 4354349 T C MPND Missense_Mutation p.S260P 0.33 tolerated(0.34) benign(0.008) TCGA-HM-A3JJ-01 19 4354354 4354354 T G MPND Missense_Mutation p.F261L 0.32 deleterious(0.01) probably_damaging(0.947) TCGA-HM-A3JJ-01 19 49469553 49469553 G A FTL Missense_Mutation p.E89K 0.16 deleterious(0.04) benign(0.354) TCGA-HM-A3JJ-01 19 52618402 52618402 C T ZNF616 Missense_Mutation p.R672Q 0.11 tolerated(0.39) benign(0.018) TCGA-HM-A3JJ-01 19 58003601 58003601 G A ZNF419 Intron 0.13 TCGA-HM-A3JJ-01 19 8056669 8056669 C A ELAVL1 Nonsense_Mutation p.E11* 0.10 TCGA-HM-A3JJ-01 1 109812373 109812373 G A CELSR2 Silent p.E2346E 0.17 TCGA-HM-A3JJ-01 1 149859292 149859292 G T HIST2H2AB Missense_Mutation p.L59M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-HM-A3JJ-01 1 155160934 155160934 G C MUC1 Missense_Mutation p.S198C 0.21 deleterious(0) probably_damaging(0.971) TCGA-HM-A3JJ-01 1 155582023 155582023 G A MSTO1 Silent p.A243A 0.28 TCGA-HM-A3JJ-01 1 179533831 179533831 G A NPHS2 Silent p.C124C 0.10 TCGA-HM-A3JJ-01 1 19439238 19439238 C T UBR4 Missense_Mutation p.V3861I 0.12 possibly_damaging(0.796) TCGA-HM-A3JJ-01 1 228612801 228612801 C T HIST3H3 Missense_Mutation p.A76T 0.21 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-HM-A3JJ-01 1 55118805 55118805 C G MROH7 Nonsense_Mutation p.S69* 0.14 TCGA-HM-A3JJ-01 1 79358831 79358831 C T ELTD1 Missense_Mutation p.R598H 0.19 tolerated(0.32) probably_damaging(0.989) TCGA-HM-A3JJ-01 20 30782727 30782727 G A PLAGL2 3'UTR 0.19 TCGA-HM-A3JJ-01 20 49209684 49209684 G A FAM65C Silent p.P750P 0.20 TCGA-HM-A3JJ-01 22 29664290 29664290 G A EWSR1 5'Flank 0.07 TCGA-HM-A3JJ-01 22 47857526 47857526 G A LL22NC03-75H12.2 Silent p.H58H 0.19 TCGA-HM-A3JJ-01 2 101604597 101604597 G T NPAS2 Missense_Mutation p.E562D 0.26 tolerated(0.45) benign(0.004) TCGA-HM-A3JJ-01 2 136564785 136564785 G A LCT Silent p.N1362N 0.10 TCGA-HM-A3JJ-01 2 179419306 179419306 C G TTN Missense_Mutation p.E29590Q 0.16 TCGA-HM-A3JJ-01 2 183066179 183066197 TCCTCCATTAGGGCCATGG - PDE1A Frame_Shift_Del p.T381Sfs*12 0.52 TCGA-HM-A3JJ-01 2 210860311 210860311 C G UNC80 Missense_Mutation p.H3257D 0.08 probably_damaging(0.923) TCGA-HM-A3JJ-01 2 31467248 31467248 C T EHD3 Silent p.N112N 0.12 TCGA-HM-A3JJ-01 2 69475448 69475448 A T ANTXR1 3'UTR 0.15 TCGA-HM-A3JJ-01 2 85577274 85577274 G A RETSAT Missense_Mutation p.R230C 0.16 tolerated(0.18) possibly_damaging(0.586) TCGA-HM-A3JJ-01 3 155311967 155311967 A G PLCH1 Missense_Mutation p.I66T 0.31 deleterious(0) probably_damaging(0.999) TCGA-HM-A3JJ-01 3 56675649 56675649 G A FAM208A Missense_Mutation p.R783C 0.20 tolerated(0.07) possibly_damaging(0.894) TCGA-HM-A3JJ-01 4 153268138 153268138 G A FBXW7 Nonsense_Mutation p.R224* 0.22 TCGA-HM-A3JJ-01 5 100143474 100143474 A T ST8SIA4 3'UTR 0.23 TCGA-HM-A3JJ-01 5 140023496 140023496 C A TMCO6 Missense_Mutation p.F350L 0.26 tolerated(1) benign(0) TCGA-HM-A3JJ-01 5 180276040 180276040 T C ZFP62 Missense_Mutation p.K819E 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-HM-A3JJ-01 5 644464 644464 A C CEP72 Missense_Mutation p.L530F 0.12 deleterious(0) probably_damaging(0.986) TCGA-HM-A3JJ-01 5 82815520 82815520 C T VCAN Silent p.G465G 0.34 TCGA-HM-A3JJ-01 5 90055259 90055259 G T GPR98 Missense_Mutation p.D3992Y 0.18 probably_damaging(0.998) TCGA-HM-A3JJ-01 6 62442633 62442633 G T KHDRBS2 Missense_Mutation p.Q283K 0.30 tolerated(0.09) benign(0.004) TCGA-HM-A3JJ-01 7 107114682 107114682 C A GPR22 Missense_Mutation p.N59K 0.28 deleterious(0) probably_damaging(0.998) TCGA-HM-A3JJ-01 7 117501286 117501286 C T CTTNBP2 Missense_Mutation p.D56N 0.36 deleterious(0.02) probably_damaging(0.974) TCGA-HM-A3JJ-01 7 120979341 120979341 G A WNT16 Missense_Mutation p.C347Y 0.19 deleterious(0) probably_damaging(1) TCGA-HM-A3JJ-01 7 136700281 136700281 G T CHRM2 Missense_Mutation p.E223D 0.34 tolerated(0.16) possibly_damaging(0.685) TCGA-HM-A3JJ-01 7 150163810 150163810 G A GIMAP8 Missense_Mutation p.M8I 0.18 tolerated(0.58) benign(0.003) TCGA-HM-A3JJ-01 7 48411896 48411896 C A ABCA13 Missense_Mutation p.S3645R 0.18 probably_damaging(1) TCGA-HM-A3JJ-01 7 62752627 62752627 G A ZNF733P RNA 0.35 TCGA-HM-A3JJ-01 7 83824021 83824021 T C SEMA3A 5'UTR 0.23 TCGA-HM-A3JJ-01 7 94037177 94037177 G A COL1A2 Missense_Mutation p.G205S 0.17 unknown(0) TCGA-HM-A3JJ-01 8 133898794 133898794 G A TG Missense_Mutation p.E393K 0.16 tolerated(0.07) benign(0.027) TCGA-HM-A3JJ-01 8 52284526 52284526 C T PXDNL Missense_Mutation p.D1270N 0.19 tolerated(0.22) probably_damaging(0.999) TCGA-HM-A3JJ-01 8 95392531 95392531 A G RAD54B Missense_Mutation p.S697P 0.16 tolerated(0.08) possibly_damaging(0.723) TCGA-HM-A3JJ-01 9 1056173 1056173 G A DMRT2 Intron 0.18 TCGA-HM-A3JJ-01 9 111659561 111659561 C G IKBKAP Missense_Mutation p.E790Q 0.12 deleterious(0.01) probably_damaging(1) TCGA-HM-A3JJ-01 9 130540875 130540875 T A SH2D3C Missense_Mutation p.K11M 0.17 deleterious_low_confidence(0) unknown(0) TCGA-HM-A3JJ-01 X 117033198 117033198 T G KLHL13 Silent p.G550G 0.11 TCGA-HM-A3JJ-01 X 118722819 118722819 A G NKRF 3'UTR 0.24 TCGA-HM-A3JJ-01 X 118752812 118752812 T A SEPT6 Intron 0.24 TCGA-HM-A3JJ-01 X 125685589 125685589 G A DCAF12L1 Missense_Mutation p.R335C 0.29 deleterious(0) probably_damaging(1) TCGA-HM-A3JJ-01 X 18924881 18924881 C A PHKA2 Missense_Mutation p.Q883H 0.24 tolerated(0.07) benign(0.008) TCGA-HM-A3JJ-01 X 27839481 27839481 G C MAGEB10 Missense_Mutation p.G20R 0.16 tolerated(0.22) possibly_damaging(0.474) TCGA-HM-A3JJ-01 X 32456376 32456376 C G DMD Missense_Mutation p.W1351C 0.20 probably_damaging(0.974) TCGA-HM-A3JJ-01 X 47835747 47835747 C T ZNF182 Missense_Mutation p.R580Q 0.14 tolerated(0.3) probably_damaging(0.939) TCGA-HM-A3JJ-01 X 48931629 48931629 C T PRAF2 Silent p.L6L 0.26 TCGA-HM-A3JJ-01 X 70627437 70627437 C T TAF1 Missense_Mutation p.S1394F 0.24 tolerated(0.17) benign(0.211) TCGA-HM-A3JJ-01 X 73965497 73965497 C G KIAA2022 5'UTR 0.12 TCGA-HM-A3JK-01 10 27112160 27112160 T C ABI1 Silent p.Q64Q 0.14 TCGA-HM-A3JK-01 10 35500979 35500979 C T CREM 3'UTR 0.35 TCGA-HM-A3JK-01 10 71899626 71899626 C G TYSND1 3'UTR 0.40 TCGA-HM-A3JK-01 10 81114402 81114402 T G PPIF 3'UTR 0.23 TCGA-HM-A3JK-01 11 103092859 103092859 A G DYNC2H1 Missense_Mutation p.N3070D 0.44 possibly_damaging(0.541) TCGA-HM-A3JK-01 11 17118705 17118705 G A PIK3C2A Missense_Mutation p.L1409F 0.28 deleterious(0.02) probably_damaging(0.964) TCGA-HM-A3JK-01 11 284302 284302 G A NLRP6 Silent p.L758L 0.34 TCGA-HM-A3JK-01 11 373229 373229 G A B4GALNT4 Missense_Mutation p.E192K 0.30 deleterious(0) probably_damaging(1) TCGA-HM-A3JK-01 11 55653082 55653082 C T TRIM51 Missense_Mutation p.R60W 0.18 tolerated(0.29) benign(0.003) TCGA-HM-A3JK-01 11 56143175 56143175 C T OR8U1 Missense_Mutation p.P26S 0.16 tolerated(0.07) probably_damaging(0.985) TCGA-HM-A3JK-01 11 66329015 66329015 C G CTSF 3'Flank 0.14 TCGA-HM-A3JK-01 11 6653796 6653796 G A DCHS1 Nonsense_Mutation p.R983* 0.20 TCGA-HM-A3JK-01 11 68190979 68190979 G A LRP5 Missense_Mutation p.S1017N 0.33 tolerated(0.56) benign(0.001) TCGA-HM-A3JK-01 11 7818375 7818375 G A OR5P2 Missense_Mutation p.L39F 0.22 tolerated(0.06) benign(0.078) TCGA-HM-A3JK-01 12 40740676 40740676 G A LRRK2 Silent p.L2077L 0.08 TCGA-HM-A3JK-01 12 56737713 56737713 A G STAT2 Missense_Mutation p.V770A 0.26 tolerated_low_confidence(0.81) benign(0.003) TCGA-HM-A3JK-01 12 6643980 6643980 G C GAPDH 5'UTR 0.15 TCGA-HM-A3JK-01 12 6730374 6730374 G A LPAR5 Missense_Mutation p.P14L 0.09 tolerated(0.38) benign(0.001) TCGA-HM-A3JK-01 14 67770295 67770295 G A MPP5 Silent p.P340P 0.38 TCGA-HM-A3JK-01 15 59387291 59387292 - T RNF111 3'UTR 0.28 TCGA-HM-A3JK-01 16 3828776 3828776 C T CREBBP Silent p.K622K 0.10 TCGA-HM-A3JK-01 16 56536701 56536701 C T BBS2 Missense_Mutation p.R275Q 0.53 tolerated(0.05) possibly_damaging(0.782) TCGA-HM-A3JK-01 16 56904130 56904130 G A SLC12A3 Missense_Mutation p.V242M 0.21 deleterious(0.04) probably_damaging(0.93) TCGA-HM-A3JK-01 16 88781794 88781794 A C CTU2 3'UTR 0.11 TCGA-HM-A3JK-01 17 6978728 6978728 C T CLEC10A Missense_Mutation p.E245K 0.09 deleterious(0.04) possibly_damaging(0.643) TCGA-HM-A3JK-01 17 73163983 73163983 G C SUMO2 3'UTR 0.41 TCGA-HM-A3JK-01 19 12978425 12978425 G A MAST1 Silent p.L759L 0.21 TCGA-HM-A3JK-01 19 34857712 34857712 G T GPI Missense_Mutation p.A119S 0.21 tolerated_low_confidence(0.12) benign(0.062) TCGA-HM-A3JK-01 1 1235269 1235269 A C ACAP3 Missense_Mutation p.I227S 0.21 tolerated(0.11) benign(0.019) TCGA-HM-A3JK-01 1 153912202 153912202 C T DENND4B Missense_Mutation p.R561Q 0.32 tolerated(1) benign(0.072) TCGA-HM-A3JK-01 1 15421416 15421416 G A KAZN Missense_Mutation p.E512K 0.17 tolerated(0.13) benign(0.019) TCGA-HM-A3JK-01 1 158226773 158226773 G A CD1A Missense_Mutation p.V268M 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-HM-A3JK-01 1 181721284 181721284 A G CACNA1E Missense_Mutation p.N1246S 0.10 tolerated(0.96) possibly_damaging(0.893) TCGA-HM-A3JK-01 1 193070288 193070288 G A GLRX2 Missense_Mutation p.P57S 0.11 tolerated(0.15) possibly_damaging(0.546) TCGA-HM-A3JK-01 1 204587401 204587401 G A LRRN2 Missense_Mutation p.R574C 0.56 deleterious(0) probably_damaging(1) TCGA-HM-A3JK-01 1 208224391 208224391 C T PLXNA2 Missense_Mutation p.R1073K 0.38 tolerated(0.54) probably_damaging(0.946) TCGA-HM-A3JK-01 1 27721509 27721509 C T GPR3 3'UTR 0.16 TCGA-HM-A3JK-01 1 63052286 63052286 G C DOCK7 Silent p.L564L 0.09 TCGA-HM-A3JK-01 1 65099846 65099846 C T CACHD1 Silent p.S252S 0.33 TCGA-HM-A3JK-01 20 44453153 44453153 G A TNNC2 Silent p.I60I 0.31 TCGA-HM-A3JK-01 20 58514009 58514009 G C PPP1R3D 3'UTR 0.34 TCGA-HM-A3JK-01 20 62494153 62494153 C T ABHD16B Silent p.P420P 0.32 TCGA-HM-A3JK-01 20 62575995 62575995 G A UCKL1 Silent p.I249I 0.14 TCGA-HM-A3JK-01 22 22127164 22127164 C T MAPK1 Missense_Mutation p.E322K 0.56 deleterious(0) probably_damaging(0.999) TCGA-HM-A3JK-01 2 160901448 160901448 G A PLA2R1 Silent p.L110L 0.27 TCGA-HM-A3JK-01 2 170048422 170048422 C T LRP2 Silent p.E2984E 0.17 TCGA-HM-A3JK-01 2 202902729 202902729 C T FZD7 3'UTR 0.30 TCGA-HM-A3JK-01 2 219897276 219897276 G A CCDC108 Silent p.F187F 0.19 TCGA-HM-A3JK-01 2 234429677 234429677 G C USP40 Missense_Mutation p.S773C 0.14 tolerated(0.16) benign(0.047) TCGA-HM-A3JK-01 3 128182808 128182808 C T DNAJB8 5'UTR 0.22 TCGA-HM-A3JK-01 3 195610077 195610077 C T TNK2 Missense_Mutation p.R250Q 0.11 tolerated(0.98) benign(0.01) TCGA-HM-A3JK-01 3 19947139 19947139 G C EFHB Missense_Mutation p.S464C 0.40 tolerated(0.09) benign(0.003) TCGA-HM-A3JK-01 3 54919573 54919573 G A CACNA2D3 Silent p.A672A 0.12 TCGA-HM-A3JK-01 3 62253428 62253428 G A PTPRG Nonsense_Mutation p.W936* 0.34 TCGA-HM-A3JK-01 3 86115950 86115950 C T CADM2 3'Flank 0.09 TCGA-HM-A3JK-01 4 123164214 123164214 C T KIAA1109 Missense_Mutation p.S1578L 0.15 benign(0.031) TCGA-HM-A3JK-01 4 123317530 123317530 G A ADAD1 Missense_Mutation p.R241K 0.21 tolerated(1) benign(0.001) TCGA-HM-A3JK-01 5 134076890 134076890 G A CAMLG Missense_Mutation p.E104K 0.30 deleterious(0.01) benign(0.356) TCGA-HM-A3JK-01 5 140580689 140580689 G A PCDHB11 Missense_Mutation p.A448T 0.17 deleterious_low_confidence(0.02) benign(0.032) TCGA-HM-A3JK-01 5 154330430 154330430 C T MRPL22 Nonsense_Mutation p.R43* 0.12 TCGA-HM-A3JK-01 5 40681122 40681122 C T PTGER4 Silent p.S9S 0.22 TCGA-HM-A3JK-01 5 40947853 40947853 C T C7 Silent p.I296I 0.41 TCGA-HM-A3JK-01 6 128505667 128505667 C T PTPRK Missense_Mutation p.E358K 0.16 deleterious(0.01) probably_damaging(0.975) TCGA-HM-A3JK-01 6 146207746 146207746 G T SHPRH 3'UTR 0.25 TCGA-HM-A3JK-01 6 20212558 20212558 G A MBOAT1 5'UTR 0.09 TCGA-HM-A3JK-01 6 50803940 50803940 G T TFAP2B Silent p.R256R 0.21 TCGA-HM-A3JK-01 6 76712654 76712654 T C IMPG1 Silent p.G424G 0.10 TCGA-HM-A3JK-01 7 100411330 100411331 CT - EPHB4 Frame_Shift_Del p.S567Qfs*21 0.13 TCGA-HM-A3JK-01 7 135614195 135614195 T C MTPN 3'UTR 0.09 TCGA-HM-A3JK-01 7 24874252 24874252 C T OSBPL3 Silent p.R533R 0.17 TCGA-HM-A3JK-01 8 11644818 11644818 G C NEIL2 3'UTR 0.12 TCGA-HM-A3JK-01 8 144557574 144557574 G A ZC3H3 Missense_Mutation p.R633C 0.22 deleterious(0) probably_damaging(0.912) TCGA-HM-A3JK-01 8 146107571 146107571 G T ZNF250 Missense_Mutation p.P338T 0.42 tolerated(0.09) probably_damaging(0.999) TCGA-HM-A3JK-01 9 101812136 101812136 G A COL15A1 Missense_Mutation p.A955T 0.21 tolerated(1) benign(0.004) TCGA-HM-A3JK-01 9 13176163 13176163 G A MPDZ Missense_Mutation p.P968L 0.30 tolerated(0.2) benign(0.001) TCGA-HM-A3JK-01 9 139403417 139403418 - GCACTCATTGACA NOTCH1 Nonsense_Mutation p.D1026Cfs*3 0.12 TCGA-HM-A3JK-01 9 2086856 2086856 G A SMARCA2 Missense_Mutation p.E852K 0.16 benign(0.056) TCGA-HM-A3JK-01 X 114384485 114384485 G T LRCH2 Missense_Mutation p.Q534K 0.26 tolerated(0.52) benign(0.021) TCGA-HM-A3JK-01 X 129059022 129059022 G A UTP14A Missense_Mutation p.E534K 0.11 tolerated(0.6) benign(0.012) TCGA-HM-A3JK-01 X 131208175 131208175 C T MST4 Silent p.D413D 0.17 TCGA-HM-A3JK-01 X 153172076 153172076 G A AVPR2 Missense_Mutation p.R337Q 0.12 tolerated(0.44) probably_damaging(0.961) TCGA-HM-A3JK-01 X 37932925 37932925 C T SYTL5 Silent p.A176A 0.16 TCGA-HM-A3JK-01 X 53615416 53615416 T C HUWE1 Missense_Mutation p.I1514V 0.25 benign(0.011) TCGA-HM-A3JK-01 X 62569848 62569848 G A SPIN4 3'UTR 0.38 TCGA-HM-A3JK-01 X 75651040 75651040 G A MAGEE1 Missense_Mutation p.R906H 0.14 tolerated(0.54) probably_damaging(0.998) TCGA-HM-A3JK-01 X 91090517 91090517 C T PCDH11X Missense_Mutation p.S5F 0.25 tolerated(0.35) benign(0.02) TCGA-HM-A6W2-01 10 118443335 118443335 C T HSPA12A Missense_Mutation p.G268S 0.51 tolerated(0.91) benign(0.001) TCGA-HM-A6W2-01 10 14995973 14995973 T G DCLRE1C Missense_Mutation p.T13P 0.42 tolerated(0.09) possibly_damaging(0.673) TCGA-HM-A6W2-01 10 89487227 89487227 C A PAPSS2 Missense_Mutation p.T356K 0.54 tolerated(0.51) benign(0.023) TCGA-HM-A6W2-01 11 19258975 19258975 G T E2F8 Silent p.R113R 0.32 TCGA-HM-A6W2-01 12 119595894 119595894 C A SRRM4 3'UTR 0.38 TCGA-HM-A6W2-01 12 123782659 123782659 C T SBNO1 Missense_Mutation p.R1302H 0.31 deleterious(0) probably_damaging(0.96) TCGA-HM-A6W2-01 12 49666644 49666644 C T TUBA1C Silent p.V328V 0.38 TCGA-HM-A6W2-01 12 93226340 93226342 TGT - EEA1 In_Frame_Del p.Q401del 0.47 TCGA-HM-A6W2-01 12 93771943 93771943 G A NUDT4 5'UTR 0.35 TCGA-HM-A6W2-01 13 33635685 33635685 A G KL Silent p.K823K 0.56 TCGA-HM-A6W2-01 14 23495444 23495444 G A PSMB5 Missense_Mutation p.R216C 0.41 deleterious(0.01) probably_damaging(0.983) TCGA-HM-A6W2-01 14 55310491 55310491 C G GCH1 3'UTR 0.45 TCGA-HM-A6W2-01 14 61201641 61201641 C T MNAT1 Silent p.L21L 0.41 TCGA-HM-A6W2-01 14 69522182 69522182 C T DCAF5 Silent p.Q407Q 0.44 TCGA-HM-A6W2-01 15 57731616 57731616 C A CGNL1 Silent p.T473T 0.64 TCGA-HM-A6W2-01 16 2121588 2121588 G T TSC2 Silent p.R639R 0.71 TCGA-HM-A6W2-01 16 90109727 90109727 G A GAS8 Missense_Mutation p.A471T 0.38 deleterious(0.01) benign(0.327) TCGA-HM-A6W2-01 17 29422000 29422000 C T NF1 5'UTR 0.42 TCGA-HM-A6W2-01 17 48940016 48940020 TAAAT - TOB1 3'UTR 0.47 TCGA-HM-A6W2-01 17 7363713 7363713 G A ZBTB4 3'UTR 0.24 TCGA-HM-A6W2-01 17 7577124 7577124 C A TP53 Missense_Mutation p.V272L 0.88 deleterious(0) probably_damaging(0.923) TCGA-HM-A6W2-01 17 79426081 79426081 G A RP11-1055B8.7 Silent p.A1869A 0.38 TCGA-HM-A6W2-01 18 11864530 11864530 A T GNAL Splice_Site p.X260_splice 0.34 TCGA-HM-A6W2-01 18 13438364 13438364 G T LDLRAD4 Silent p.P54P 0.44 TCGA-HM-A6W2-01 18 77918234 77918234 G A PARD6G Missense_Mutation p.P184L 0.10 deleterious(0.02) benign(0.179) TCGA-HM-A6W2-01 19 2076952 2076952 C T MOB3A Missense_Mutation p.R161H 0.44 deleterious(0) probably_damaging(0.996) TCGA-HM-A6W2-01 19 22940625 22940625 T G ZNF99 Missense_Mutation p.K696Q 0.41 tolerated(0.94) benign(0.359) TCGA-HM-A6W2-01 19 36293959 36293959 C T PRODH2 Silent p.L417L 0.50 TCGA-HM-A6W2-01 19 3747884 3747884 C T TJP3 Silent p.S814S 0.40 TCGA-HM-A6W2-01 19 47181813 47181813 C T PRKD2 Silent p.Q726Q 0.38 TCGA-HM-A6W2-01 19 55777274 55777274 G A HSPBP1 Silent p.H291H 0.28 TCGA-HM-A6W2-01 19 56303739 56303739 C T NLRP11 Missense_Mutation p.R814H 0.37 tolerated(0.62) benign(0) TCGA-HM-A6W2-01 1 103491790 103491790 C T COL11A1 Silent p.E293E 0.33 TCGA-HM-A6W2-01 1 115417165 115417165 G T SYCP1 Missense_Mutation p.D213Y 0.37 deleterious(0) probably_damaging(0.989) TCGA-HM-A6W2-01 1 1562500 1562500 C T MIB2 Silent p.D544D 0.35 TCGA-HM-A6W2-01 1 16258643 16258643 G T SPEN Nonsense_Mutation p.E1970* 0.33 TCGA-HM-A6W2-01 1 167906275 167906275 T C MPC2 5'Flank 0.38 TCGA-HM-A6W2-01 1 17958912 17958912 C A ARHGEF10L Silent p.R561R 0.42 TCGA-HM-A6W2-01 1 185274739 185274739 G A IVNS1ABP Missense_Mutation p.L232F 0.42 tolerated(0.18) benign(0.434) TCGA-HM-A6W2-01 1 224927094 224927094 G A CNIH3 3'UTR 0.26 TCGA-HM-A6W2-01 1 35227534 35227534 C T GJB4 Missense_Mutation p.R227W 0.36 tolerated(0.23) benign(0.003) TCGA-HM-A6W2-01 1 39924062 39924062 T C MACF1 Silent p.T4973T 0.39 TCGA-HM-A6W2-01 1 53546522 53546522 G A PODN Silent p.T593T 0.39 TCGA-HM-A6W2-01 1 67877910 67877910 T C SERBP1 3'UTR 0.38 TCGA-HM-A6W2-01 20 34116855 34116855 G A C20orf173 Intron 0.45 TCGA-HM-A6W2-01 20 49366260 49366260 C T PARD6B Silent p.N118N 0.41 TCGA-HM-A6W2-01 20 61525859 61525859 T A DIDO1 Silent p.T826T 0.30 TCGA-HM-A6W2-01 20 62292678 62292678 A G RTEL1 Missense_Mutation p.T44A 0.29 deleterious(0) probably_damaging(1) TCGA-HM-A6W2-01 20 9343594 9343594 G A PLCB4 Missense_Mutation p.V141I 0.46 tolerated(0.28) benign(0.146) TCGA-HM-A6W2-01 2 135988185 135988185 G T ZRANB3 Missense_Mutation p.P618T 0.34 tolerated(0.1) benign(0.002) TCGA-HM-A6W2-01 2 136545798 136545798 A G LCT 3'UTR 0.30 TCGA-HM-A6W2-01 2 136546021 136546021 A C LCT Missense_Mutation p.V1886G 0.33 deleterious(0) benign(0.036) TCGA-HM-A6W2-01 2 159519819 159519831 GTCCCCCAAAGGG CA PKP4 Frame_Shift_Del p.K813Nfs*3 0.09 TCGA-HM-A6W2-01 2 159522965 159522965 G T PKP4 Missense_Mutation p.G873V 0.39 deleterious(0) probably_damaging(1) TCGA-HM-A6W2-01 2 179529424 179529424 C A TTN Silent p.T12053T 0.45 TCGA-HM-A6W2-01 2 206992595 206992595 G A NDUFS1 Nonsense_Mutation p.Q618* 0.38 TCGA-HM-A6W2-01 2 96919367 96919367 G A TMEM127 3'UTR 0.28 TCGA-HM-A6W2-01 2 97860610 97860610 C T ANKRD36 Missense_Mutation p.S836L 0.27 tolerated_low_confidence(1) probably_damaging(0.98) TCGA-HM-A6W2-01 3 190321985 190321985 A G IL1RAP Missense_Mutation p.I45V 0.41 tolerated(0.17) benign(0.046) TCGA-HM-A6W2-01 3 44952898 44952898 G A TGM4 Missense_Mutation p.G638E 0.31 deleterious(0.04) possibly_damaging(0.774) TCGA-HM-A6W2-01 4 20512157 20512157 A T SLIT2 Silent p.G318G 0.30 TCGA-HM-A6W2-01 4 54880039 54880039 T G CHIC2 Missense_Mutation p.K138Q 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-HM-A6W2-01 5 140262146 140262146 G A PCDHA13 Missense_Mutation p.R98Q 0.34 tolerated_low_confidence(0.12) benign(0.021) TCGA-HM-A6W2-01 5 16177968 16177968 C T MARCH11 Missense_Mutation p.R187Q 0.39 deleterious(0) probably_damaging(0.997) TCGA-HM-A6W2-01 5 175306964 175306964 C T CPLX2 Silent p.D107D 0.34 TCGA-HM-A6W2-01 5 178413949 178413949 C T GRM6 Missense_Mutation p.G464R 0.48 deleterious(0) probably_damaging(0.996) TCGA-HM-A6W2-01 6 160182393 160182393 T A ACAT2 5'UTR 0.42 TCGA-HM-A6W2-01 7 20199642 20199642 A T MACC1 Missense_Mutation p.D114E 0.24 tolerated(0.27) benign(0.437) TCGA-HM-A6W2-01 7 4272930 4272930 C T SDK1 Silent p.S1957S 0.33 TCGA-HM-A6W2-01 8 110437370 110437370 C G PKHD1L1 Silent p.G918G 0.20 TCGA-HM-A6W2-01 8 144734337 144734337 G A ZNF623 3'UTR 0.59 TCGA-HM-A6W2-01 9 28295307 28295307 G A LINGO2 5'UTR 0.42 TCGA-HM-A6W2-01 9 98643393 98643393 C T ERCC6L2 Nonsense_Mutation p.R108* 0.27 TCGA-HM-A6W2-01 X 115590368 115590368 C T SLC6A14 3'UTR 0.41 TCGA-HM-A6W2-01 X 130415721 130415721 A T IGSF1 Missense_Mutation p.Y482N 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-HM-A6W2-01 X 30236921 30236921 G T MAGEB2 Missense_Mutation p.G75V 0.44 deleterious(0.03) possibly_damaging(0.638) TCGA-HM-A6W2-01 X 44920617 44920617 G A KDM6A Missense_Mutation p.V460I 0.38 tolerated(0.12) benign(0.171) TCGA-HM-A6W2-01 X 83129405 83129405 C T CYLC1 Silent p.G563G 0.39 TCGA-IR-A3L7-01 11 102220740 102220740 C T BIRC2 Missense_Mutation p.T52I 0.51 deleterious(0) probably_damaging(0.998) TCGA-IR-A3L7-01 11 22399472 22399472 A G SLC17A6 3'UTR 0.31 TCGA-IR-A3L7-01 11 3038339 3038339 C T CARS Silent p.L638L 0.37 TCGA-IR-A3L7-01 11 71259966 71259966 G T KRTAP5-9 Missense_Mutation p.C88F 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-IR-A3L7-01 12 130882597 130882597 A G RIMBP2 3'UTR 0.60 TCGA-IR-A3L7-01 12 5685041 5685041 C T ANO2 Silent p.Q860Q 0.24 TCGA-IR-A3L7-01 14 103369593 103369593 G A TRAF3 Missense_Mutation p.R321Q 0.13 tolerated(0.12) benign(0.027) TCGA-IR-A3L7-01 14 74876248 74876248 C T SYNDIG1L Nonsense_Mutation p.W67* 0.25 TCGA-IR-A3L7-01 16 1825175 1825175 G A EME2 Intron 0.12 TCGA-IR-A3L7-01 16 24921753 24921753 G A SLC5A11 Missense_Mutation p.V593I 0.31 tolerated(0.58) benign(0.001) TCGA-IR-A3L7-01 16 422230 422230 C A TMEM8A Missense_Mutation p.W691C 0.38 deleterious(0) probably_damaging(1) TCGA-IR-A3L7-01 17 10357006 10357006 A G MYH4 Missense_Mutation p.L963P 0.34 deleterious(0) probably_damaging(0.954) TCGA-IR-A3L7-01 17 15976849 15976856 TGGACTCC - NCOR1 Frame_Shift_Del p.R1233Kfs*5 0.43 TCGA-IR-A3L7-01 17 40362483 40362483 C A STAT5B Missense_Mutation p.W571C 0.50 deleterious(0) possibly_damaging(0.877) TCGA-IR-A3L7-01 17 46863530 46863530 T A TTLL6 Missense_Mutation p.K586I 0.31 deleterious(0) possibly_damaging(0.767) TCGA-IR-A3L7-01 18 51851221 51851221 C T STARD6 Silent p.V168V 0.36 TCGA-IR-A3L7-01 19 11925142 11925142 C G ZNF440 5'UTR 0.59 TCGA-IR-A3L7-01 19 22817154 22817154 T C ZNF492 5'UTR 0.62 TCGA-IR-A3L7-01 19 40382747 40382747 A G FCGBP Missense_Mutation p.V3380A 0.10 benign(0.418) TCGA-IR-A3L7-01 1 154201178 154201178 C T UBAP2L Missense_Mutation p.L86F 0.47 deleterious(0) unknown(0) TCGA-IR-A3L7-01 1 159804981 159804981 G C SLAMF8 Missense_Mutation p.K263N 0.18 deleterious(0.02) possibly_damaging(0.776) TCGA-IR-A3L7-01 1 16957526 16957526 G A CROCCP2 RNA 0.23 TCGA-IR-A3L7-01 1 205033553 205033553 C G CNTN2 Silent p.A448A 0.23 TCGA-IR-A3L7-01 1 215259781 215259781 G A KCNK2 Silent p.T39T 0.09 TCGA-IR-A3L7-01 20 30921606 30921606 C G KIF3B 3'UTR 0.53 TCGA-IR-A3L7-01 20 62730158 62730158 C T OPRL1 3'UTR 0.10 TCGA-IR-A3L7-01 20 9460165 9460165 C T PLCB4 3'UTR 0.35 TCGA-IR-A3L7-01 21 47549036 47549036 C T COL6A2 Intron 0.09 TCGA-IR-A3L7-01 22 20101268 20101268 C T TRMT2A Missense_Mutation p.G433R 0.10 tolerated(0.24) benign(0.027) TCGA-IR-A3L7-01 22 36685206 36685206 C T MYH9 Silent p.E1494E 0.19 TCGA-IR-A3L7-01 22 38340166 38340166 C T C22orf23 3'UTR 0.35 TCGA-IR-A3L7-01 2 182928496 182928496 G C PPP1R1C Silent p.V80V 0.38 TCGA-IR-A3L7-01 3 150421460 150421460 C G FAM194A Missense_Mutation p.E76Q 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-IR-A3L7-01 3 48337645 48337645 C T NME6 Missense_Mutation p.R74H 0.15 deleterious(0.03) probably_damaging(0.977) TCGA-IR-A3L7-01 3 52256448 52256448 G A TLR9 Silent p.S782S 0.65 TCGA-IR-A3L7-01 4 762917 762917 C A PCGF3 3'UTR 0.31 TCGA-IR-A3L7-01 4 78639618 78639618 C T CNOT6L 3'UTR 0.36 TCGA-IR-A3L7-01 5 10286563 10286563 G A CMBL Silent p.A123A 0.39 TCGA-IR-A3L7-01 5 118788380 118788380 G C HSD17B4 5'UTR 0.40 TCGA-IR-A3L7-01 5 34919960 34919960 G A BRIX1 Missense_Mutation p.R96H 0.32 deleterious(0.03) benign(0.178) TCGA-IR-A3L7-01 5 75580985 75580985 A G SV2C Splice_Site p.X305_splice 0.36 TCGA-IR-A3L7-01 6 16327014 16327014 T C ATXN1 Missense_Mutation p.T510A 0.84 tolerated(0.16) probably_damaging(0.941) TCGA-IR-A3L7-01 6 25109773 25109773 C A CMAHP RNA 0.58 TCGA-IR-A3L7-01 6 3078028 3078028 C T RIPK1 Silent p.L60L 0.53 TCGA-IR-A3L7-01 9 124214450 124214450 C T RP11-162D16.2 RNA 0.59 TCGA-IR-A3L7-01 9 2643216 2643216 A G VLDLR Missense_Mutation p.R169G 0.42 tolerated(0.39) benign(0.102) TCGA-IR-A3L7-01 X 107018613 107018613 C T TSC22D3 Missense_Mutation p.G13S 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IR-A3L7-01 X 146360778 146360778 C T MIR514A1 RNA 0.23 TCGA-IR-A3L7-01 X 153706281 153706281 G C LAGE3 3'UTR 0.28 TCGA-IR-A3L7-01 X 83724357 83724360 TGTT - HDX Frame_Shift_Del p.K124Ifs*35 0.48 TCGA-IR-A3LA-01 10 102675791 102675791 C G FAM178A Nonsense_Mutation p.S59* 0.41 TCGA-IR-A3LA-01 10 103368658 103368658 G A DPCD Silent p.L157L 0.34 TCGA-IR-A3LA-01 10 103901643 103901643 G C PPRC1 Missense_Mutation p.Q1126H 0.15 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-IR-A3LA-01 10 105350943 105350943 C T NEURL1 3'UTR 0.35 TCGA-IR-A3LA-01 10 112058485 112058485 C G SMNDC1 Missense_Mutation p.D62H 0.34 tolerated(0.05) benign(0.155) TCGA-IR-A3LA-01 10 112262487 112262487 G C DUSP5 Missense_Mutation p.E130Q 0.39 deleterious(0.02) possibly_damaging(0.733) TCGA-IR-A3LA-01 10 112343189 112343189 G A SMC3 Missense_Mutation p.M284I 0.41 tolerated(0.23) benign(0.001) TCGA-IR-A3LA-01 10 11373822 11373822 G C CELF2 3'UTR 0.57 TCGA-IR-A3LA-01 10 114194092 114194092 C T ZDHHC6 Nonsense_Mutation p.W289* 0.42 TCGA-IR-A3LA-01 10 115894805 115894805 G C C10orf118 Missense_Mutation p.L508V 0.53 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 10 115973275 115973275 C A TDRD1 Missense_Mutation p.L668I 0.55 tolerated(1) benign(0.001) TCGA-IR-A3LA-01 10 118639377 118639377 C T ENO4 Intron 0.47 TCGA-IR-A3LA-01 10 118641273 118641273 C G ENO4 3'UTR 0.38 TCGA-IR-A3LA-01 10 11911485 11911485 C A PROSER2 Intron 0.25 TCGA-IR-A3LA-01 10 119308192 119308192 G A EMX2 3'UTR 0.37 TCGA-IR-A3LA-01 10 120442111 120442111 A T CACUL1 3'UTR 0.35 TCGA-IR-A3LA-01 10 120797792 120797792 C G EIF3A Missense_Mutation p.R1229T 0.46 tolerated_low_confidence(0.12) unknown(0) TCGA-IR-A3LA-01 10 123549786 123549786 C T ATE1 Missense_Mutation p.D426N 0.51 tolerated(0.08) benign(0.099) TCGA-IR-A3LA-01 10 124390767 124390767 C T DMBT1 Missense_Mutation p.H1977Y 0.45 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LA-01 10 127529516 127529516 C G DHX32 Missense_Mutation p.L531F 0.47 tolerated(0.72) benign(0.016) TCGA-IR-A3LA-01 10 127705640 127705640 C G ADAM12 3'UTR 0.37 TCGA-IR-A3LA-01 10 132961448 132961448 C A TCERG1L Missense_Mutation p.G324V 0.44 tolerated(0.08) benign(0.115) TCGA-IR-A3LA-01 10 133976803 133976803 G C JAKMIP3 Missense_Mutation p.E769Q 0.38 deleterious(0.03) possibly_damaging(0.836) TCGA-IR-A3LA-01 10 134885576 134885576 G C GPR123 Missense_Mutation p.W112S 0.47 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-IR-A3LA-01 10 135011222 135011222 C G KNDC1 Nonsense_Mutation p.S619* 0.48 TCGA-IR-A3LA-01 10 13534659 13534659 C G BEND7 Missense_Mutation p.E211D 0.38 tolerated_low_confidence(0.2) benign(0.024) TCGA-IR-A3LA-01 10 15617594 15617594 C T ITGA8 Splice_Site p.X791_splice 0.49 TCGA-IR-A3LA-01 10 16564003 16564003 G C C1QL3 5'UTR 0.29 TCGA-IR-A3LA-01 10 16967336 16967336 G C CUBN Missense_Mutation p.L2184V 0.28 tolerated(0.06) benign(0.204) TCGA-IR-A3LA-01 10 19884191 19884191 G A MALRD1 Missense_Mutation p.V1296I 0.21 tolerated(0.85) benign(0.431) TCGA-IR-A3LA-01 10 21072034 21072034 G A NEBL 3'UTR 0.61 TCGA-IR-A3LA-01 10 25147323 25147323 C G PRTFDC1 Missense_Mutation p.E141Q 0.64 deleterious(0.01) possibly_damaging(0.654) TCGA-IR-A3LA-01 10 26785257 26785257 C T APBB1IP Missense_Mutation p.P33S 0.29 tolerated(0.05) possibly_damaging(0.59) TCGA-IR-A3LA-01 10 27485568 27485568 C T ACBD5 3'UTR 0.27 TCGA-IR-A3LA-01 10 29821682 29821682 C G SVIL Silent p.S538S 0.18 TCGA-IR-A3LA-01 10 33467028 33467028 C T NRP1 3'UTR 0.63 TCGA-IR-A3LA-01 10 34649003 34649003 G C PARD3 Missense_Mutation p.S631C 0.68 tolerated(0.1) benign(0.399) TCGA-IR-A3LA-01 10 38120188 38120188 C T ZNF248 3'UTR 0.47 TCGA-IR-A3LA-01 10 38407182 38407182 C A ZNF37A Nonsense_Mutation p.S368* 0.45 TCGA-IR-A3LA-01 10 38407831 38407831 G C ZNF37A 3'UTR 0.36 TCGA-IR-A3LA-01 10 402355 402355 C G DIP2C Intron 0.65 TCGA-IR-A3LA-01 10 42831671 42831671 G A RP11-313J2.1 RNA 0.29 TCGA-IR-A3LA-01 10 43294068 43294068 G C BMS1 Missense_Mutation p.E748Q 0.43 deleterious(0.03) benign(0.309) TCGA-IR-A3LA-01 10 43608311 43608311 G A RET Silent p.R553R 0.52 TCGA-IR-A3LA-01 10 49944021 49944021 C T WDFY4 Missense_Mutation p.S595L 0.35 tolerated(0.56) benign(0.311) TCGA-IR-A3LA-01 10 50034943 50034943 C T WDFY4 Silent p.L2070L 0.44 TCGA-IR-A3LA-01 10 50369632 50369632 C G C10orf128 Intron 0.48 TCGA-IR-A3LA-01 10 53459272 53459272 C G CSTF2T Missense_Mutation p.R13P 0.45 deleterious(0) probably_damaging(0.973) TCGA-IR-A3LA-01 10 54054427 54054427 C T PRKG1 3'UTR 0.41 TCGA-IR-A3LA-01 10 58118056 58118056 C G ZWINT Intron 0.42 TCGA-IR-A3LA-01 10 61412606 61412606 G C SLC16A9 Missense_Mutation p.S485C 0.56 tolerated(1) benign(0.001) TCGA-IR-A3LA-01 10 61926591 61926591 C G ANK3 Missense_Mutation p.D848H 0.33 probably_damaging(0.999) TCGA-IR-A3LA-01 10 63810655 63810655 C T ARID5B Missense_Mutation p.L248F 0.44 deleterious(0.03) benign(0.271) TCGA-IR-A3LA-01 10 64416242 64416242 G C ZNF365 Missense_Mutation p.E406Q 0.44 tolerated_low_confidence(0.16) benign(0.001) TCGA-IR-A3LA-01 10 70243195 70243195 G C SLC25A16 Silent p.L331L 0.44 TCGA-IR-A3LA-01 10 70738685 70738685 G C DDX21 Missense_Mutation p.E664Q 0.57 tolerated(0.11) benign(0.043) TCGA-IR-A3LA-01 10 70863643 70863643 G A SRGN Missense_Mutation p.D82N 0.40 tolerated(1) benign(0.002) TCGA-IR-A3LA-01 10 71917551 71917551 G C SAR1A Missense_Mutation p.S106C 0.36 deleterious(0.01) benign(0.003) TCGA-IR-A3LA-01 10 72619135 72619135 G T SGPL1 Missense_Mutation p.G165V 0.47 deleterious(0.01) possibly_damaging(0.707) TCGA-IR-A3LA-01 10 72631650 72631650 C G SGPL1 Silent p.L322L 0.38 TCGA-IR-A3LA-01 10 75557291 75557291 C G ZSWIM8 Missense_Mutation p.S1197C 0.41 tolerated(0.11) probably_damaging(0.991) TCGA-IR-A3LA-01 10 75888905 75888905 C G AP3M1 Missense_Mutation p.G255A 0.42 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 10 79569395 79569395 C G DLG5 Silent p.G1519G 0.42 TCGA-IR-A3LA-01 10 79743675 79743675 C G POLR3A Intron 0.60 TCGA-IR-A3LA-01 10 82277895 82277895 G T TSPAN14 3'UTR 0.48 TCGA-IR-A3LA-01 10 84738789 84738789 G A NRG3 Missense_Mutation p.R499Q 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-IR-A3LA-01 10 86001212 86001212 C G LRIT1 5'UTR 0.59 TCGA-IR-A3LA-01 10 88677071 88677071 G A BMPR1A Missense_Mutation p.E286K 0.42 tolerated(0.09) benign(0.132) TCGA-IR-A3LA-01 10 89419750 89419750 C G PAPSS2 Missense_Mutation p.I4M 0.67 tolerated_low_confidence(0.23) benign(0.003) TCGA-IR-A3LA-01 10 89473852 89473852 G C PAPSS2 Missense_Mutation p.E145Q 0.38 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LA-01 10 90983552 90983552 A G LIPA Silent p.S237S 0.29 TCGA-IR-A3LA-01 10 91144451 91144451 G C IFIT1B Missense_Mutation p.E461Q 0.33 deleterious(0.05) probably_damaging(0.936) TCGA-IR-A3LA-01 10 92508964 92508964 G A HTR7 Silent p.L309L 0.33 TCGA-IR-A3LA-01 10 93812113 93812113 G C CPEB3 Missense_Mutation p.F651L 0.40 deleterious(0.02) probably_damaging(0.974) TCGA-IR-A3LA-01 10 94389984 94389984 G C KIF11 Missense_Mutation p.D453H 0.50 deleterious(0.01) possibly_damaging(0.469) TCGA-IR-A3LA-01 10 95121295 95121295 G A MYOF Missense_Mutation p.S963L 0.42 deleterious(0.03) benign(0.109) TCGA-IR-A3LA-01 10 98205860 98205860 C T TLL2 Missense_Mutation p.E118K 0.41 tolerated(0.68) benign(0.001) TCGA-IR-A3LA-01 10 98742023 98742023 G C C10orf12 Silent p.L292L 0.48 TCGA-IR-A3LA-01 10 98742703 98742703 G C C10orf12 Missense_Mutation p.R519T 0.39 tolerated(0.17) benign(0.392) TCGA-IR-A3LA-01 10 98745219 98745219 G C C10orf12 3'UTR 0.45 TCGA-IR-A3LA-01 10 98794254 98794254 G A SLIT1 Silent p.F804F 0.50 TCGA-IR-A3LA-01 10 99132923 99132923 C G RRP12 Missense_Mutation p.K687N 0.38 deleterious(0) probably_damaging(0.925) TCGA-IR-A3LA-01 11 100792321 100792321 G A ARHGAP42 Missense_Mutation p.E195K 0.89 deleterious(0.01) probably_damaging(0.997) TCGA-IR-A3LA-01 11 101353715 101353715 G A TRPC6 Missense_Mutation p.S492L 0.75 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LA-01 11 101815077 101815077 G A KIAA1377 Silent p.K110K 0.90 TCGA-IR-A3LA-01 11 103112253 103112253 C G DYNC2H1 Intron 0.81 TCGA-IR-A3LA-01 11 104871140 104871140 T C CASP5 Missense_Mutation p.H280R 0.75 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LA-01 11 107375373 107375373 C T ALKBH8 3'UTR 0.93 TCGA-IR-A3LA-01 11 107393059 107393059 C T ALKBH8 Missense_Mutation p.G418E 0.87 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 11 108199914 108199914 G C ATM Missense_Mutation p.R2419T 0.87 tolerated(0.15) benign(0.069) TCGA-IR-A3LA-01 11 110008101 110008101 G C ZC3H12C Silent p.L245L 0.83 TCGA-IR-A3LA-01 11 113661671 113661671 G T ATF4P4 RNA 0.85 TCGA-IR-A3LA-01 11 113685932 113685932 G A USP28 Nonsense_Mutation p.Q546* 0.84 TCGA-IR-A3LA-01 11 113813817 113813817 G C HTR3B Missense_Mutation p.R270S 0.88 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 11 117265684 117265684 G C CEP164 Missense_Mutation p.D937H 0.84 deleterious(0.02) probably_damaging(0.942) TCGA-IR-A3LA-01 11 118076639 118076639 G T AMICA1 Missense_Mutation p.H164Q 0.88 tolerated(0.44) benign(0.196) TCGA-IR-A3LA-01 11 118362470 118362470 G A KMT2A Missense_Mutation p.E1611K 0.88 probably_damaging(0.998) TCGA-IR-A3LA-01 11 118444427 118444427 G A ARCN1 Intron 0.89 TCGA-IR-A3LA-01 11 118938721 118938721 G C VPS11 Missense_Mutation p.D63H 0.80 tolerated(0.05) benign(0.082) TCGA-IR-A3LA-01 11 124135521 124135521 G A OR8G5 Missense_Mutation p.E267K 0.85 deleterious(0.04) benign(0.085) TCGA-IR-A3LA-01 11 124766825 124766825 C T ROBO4 Intron 0.95 TCGA-IR-A3LA-01 11 126079522 126079522 G A RPUSD4 Missense_Mutation p.R151W 0.83 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 11 1268333 1268333 C G MUC5B Nonsense_Mutation p.S3408* 0.26 TCGA-IR-A3LA-01 11 1275346 1275346 C T MUC5B Missense_Mutation p.S5081F 0.41 unknown(0) TCGA-IR-A3LA-01 11 1276305 1276305 C G MUC5B Silent p.L5233L 0.50 TCGA-IR-A3LA-01 11 12959493 12959493 G A TEAD1 3'UTR 0.43 TCGA-IR-A3LA-01 11 130724712 130724712 C T RP11-890B15.2 RNA 0.86 TCGA-IR-A3LA-01 11 14300668 14300668 G C RRAS2 3'UTR 0.27 TCGA-IR-A3LA-01 11 1619458 1619458 C G KRTAP5-2 Missense_Mutation p.R8T 0.57 unknown(0) TCGA-IR-A3LA-01 11 17758017 17758017 G A KCNC1 Silent p.A156A 0.50 TCGA-IR-A3LA-01 11 18291272 18291272 G C SAA1 Missense_Mutation p.R80T 0.43 deleterious(0.01) possibly_damaging(0.794) TCGA-IR-A3LA-01 11 20078079 20078079 C T NAV2 Missense_Mutation p.S1635L 0.44 tolerated(0.79) benign(0) TCGA-IR-A3LA-01 11 20657923 20657923 C T SLC6A5 Silent p.I565I 0.45 TCGA-IR-A3LA-01 11 2320859 2320859 G C C11orf21 Missense_Mutation p.H122D 0.49 tolerated_low_confidence(0.08) benign(0.031) TCGA-IR-A3LA-01 11 28112241 28112241 C G KIF18A Missense_Mutation p.D208H 0.39 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 11 28112262 28112262 C G KIF18A Missense_Mutation p.E201Q 0.41 deleterious(0.04) benign(0.107) TCGA-IR-A3LA-01 11 28352295 28352295 G C METTL15 Missense_Mutation p.L377F 0.29 tolerated(0.73) benign(0.009) TCGA-IR-A3LA-01 11 290715 290715 G A ATHL1 Missense_Mutation p.G170R 0.29 deleterious(0.02) possibly_damaging(0.884) TCGA-IR-A3LA-01 11 32975658 32975658 G A QSER1 Missense_Mutation p.G1349E 0.52 deleterious(0.04) benign(0.194) TCGA-IR-A3LA-01 11 35227665 35227665 C T CD44 Missense_Mutation p.S430L 0.44 deleterious(0.02) benign(0.164) TCGA-IR-A3LA-01 11 35253888 35253888 G C CD44 3'Flank 0.41 TCGA-IR-A3LA-01 11 36614675 36614675 C G RAG2 Missense_Mutation p.L348F 0.58 tolerated(0.05) probably_damaging(0.999) TCGA-IR-A3LA-01 11 45265461 45265461 G C SYT13 3'UTR 0.62 TCGA-IR-A3LA-01 11 45832868 45832868 G C SLC35C1 Missense_Mutation p.K359N 0.28 tolerated(0.06) benign(0.052) TCGA-IR-A3LA-01 11 47236518 47236518 C G DDB2 5'UTR 0.37 TCGA-IR-A3LA-01 11 47350214 47350214 G A MADD Missense_Mutation p.E1600K 0.43 tolerated(1) probably_damaging(0.995) TCGA-IR-A3LA-01 11 48346555 48346555 C G OR4C3 Missense_Mutation p.F21L 0.34 tolerated_low_confidence(0.36) benign(0.001) TCGA-IR-A3LA-01 11 534330 534330 C T HRAS 5'UTR 0.47 TCGA-IR-A3LA-01 11 55111510 55111510 C T OR4A16 Silent p.L278L 0.54 TCGA-IR-A3LA-01 11 55890695 55890695 C G OR8H3 Missense_Mutation p.P283A 0.86 deleterious(0.01) possibly_damaging(0.77) TCGA-IR-A3LA-01 11 56380559 56380559 G C OR5M1 Missense_Mutation p.I140M 0.90 deleterious(0.01) benign(0.091) TCGA-IR-A3LA-01 11 57947066 57947066 C T OR9Q1 Silent p.L50L 0.87 TCGA-IR-A3LA-01 11 57982586 57982586 G A OR1S1 Missense_Mutation p.D124N 0.59 deleterious(0.01) benign(0.04) TCGA-IR-A3LA-01 11 57983057 57983057 G C OR1S1 Missense_Mutation p.E281Q 0.81 tolerated(0.06) possibly_damaging(0.555) TCGA-IR-A3LA-01 11 58477987 58477987 G C GLYAT Intron 0.70 TCGA-IR-A3LA-01 11 59426377 59426377 C G PATL1 Missense_Mutation p.E130Q 0.73 tolerated(0.45) benign(0.106) TCGA-IR-A3LA-01 11 59980660 59980660 C T MS4A4E Intron 0.71 TCGA-IR-A3LA-01 11 614216 614216 C G IRF7 Missense_Mutation p.E226Q 0.39 tolerated(0.57) benign(0.017) TCGA-IR-A3LA-01 11 61491027 61491027 G A DAGLA Silent p.L177L 0.86 TCGA-IR-A3LA-01 11 61541448 61541448 C A MYRF Silent p.L375L 0.92 TCGA-IR-A3LA-01 11 62010802 62010802 G C SCGB1D2 Missense_Mutation p.D33H 0.71 tolerated(0.12) benign(0.11) TCGA-IR-A3LA-01 11 62415199 62415199 G A INTS5 Missense_Mutation p.H785Y 0.93 tolerated(0.09) benign(0.287) TCGA-IR-A3LA-01 11 62871656 62871656 C T SLC22A24 Silent p.L315L 0.87 TCGA-IR-A3LA-01 11 63722995 63722995 G C NAA40 3'UTR 0.56 TCGA-IR-A3LA-01 11 64026147 64026147 C G PLCB3 Silent p.P405P 0.38 TCGA-IR-A3LA-01 11 6411719 6411719 G C SMPD1 5'UTR 0.43 TCGA-IR-A3LA-01 11 64428387 64428387 C T NRXN2 Missense_Mutation p.E675K 0.30 tolerated(0.07) benign(0.013) TCGA-IR-A3LA-01 11 64594791 64594791 G T CDC42BPG Missense_Mutation p.F1410L 0.57 deleterious(0.02) benign(0.008) TCGA-IR-A3LA-01 11 64662161 64662161 G A ATG2A 3'UTR 0.65 TCGA-IR-A3LA-01 11 65064734 65064734 G A POLA2 Silent p.R597R 0.64 TCGA-IR-A3LA-01 11 65112088 65112088 G C DPF2 Intron 0.58 TCGA-IR-A3LA-01 11 65482041 65482041 G A KAT5 Missense_Mutation p.D256N 0.48 deleterious(0.04) possibly_damaging(0.481) TCGA-IR-A3LA-01 11 65482375 65482375 G C KAT5 Missense_Mutation p.K341N 0.19 deleterious(0) probably_damaging(0.985) TCGA-IR-A3LA-01 11 66050892 66050892 C G CNIH2 Intron 0.29 TCGA-IR-A3LA-01 11 66358231 66358231 G A CCDC87 Silent p.F752F 0.51 TCGA-IR-A3LA-01 11 66358234 66358234 G A CCDC87 Silent p.F751F 0.48 TCGA-IR-A3LA-01 11 66358455 66358455 G T CCDC87 Missense_Mutation p.L678M 0.43 tolerated(0.06) possibly_damaging(0.459) TCGA-IR-A3LA-01 11 66358496 66358496 C G CCDC87 Missense_Mutation p.G664A 0.43 deleterious(0.04) benign(0.283) TCGA-IR-A3LA-01 11 6644960 6644960 G C DCHS1 Silent p.L2649L 0.60 TCGA-IR-A3LA-01 11 67219821 67219821 G C GPR152 Silent p.L125L 0.29 TCGA-IR-A3LA-01 11 67374475 67374475 G C NDUFV1 5'UTR 0.72 TCGA-IR-A3LA-01 11 67375920 67375920 C T NDUFV1 Silent p.F42F 0.17 TCGA-IR-A3LA-01 11 68173992 68173992 G A LRP5 Missense_Mutation p.G601E 0.13 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LA-01 11 68369421 68369421 G A PPP6R3 Silent p.L761L 0.26 TCGA-IR-A3LA-01 11 68522294 68522294 G C CPT1A 3'Flank 0.12 TCGA-IR-A3LA-01 11 68562339 68562339 C G CPT1A Missense_Mutation p.R271T 0.20 deleterious(0) possibly_damaging(0.843) TCGA-IR-A3LA-01 11 68773105 68773105 C T MRGPRF Missense_Mutation p.E225K 0.17 tolerated(0.23) possibly_damaging(0.56) TCGA-IR-A3LA-01 11 70318081 70318081 C T SHANK2 3'UTR 0.23 TCGA-IR-A3LA-01 11 76871234 76871234 G A MYO7A Missense_Mutation p.C369Y 0.90 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LA-01 11 77378488 77378488 G C RSF1 Nonsense_Mutation p.S1267* 0.82 TCGA-IR-A3LA-01 11 77930202 77930202 G A GAB2 3'UTR 0.69 TCGA-IR-A3LA-01 11 9431474 9431474 G C IPO7 Splice_Site p.X107_splice 0.33 TCGA-IR-A3LA-01 11 9466668 9466668 G T IPO7 Missense_Mutation p.G1015V 0.39 deleterious(0) probably_damaging(0.931) TCGA-IR-A3LA-01 11 94924717 94924717 C G SESN3 Missense_Mutation p.E65Q 0.83 tolerated(0.1) probably_damaging(0.996) TCGA-IR-A3LA-01 11 99690326 99690326 G C CNTN5 Missense_Mutation p.R36T 0.76 deleterious_low_confidence(0.01) benign(0.205) TCGA-IR-A3LA-01 12 101801473 101801473 C T ARL1 5'UTR 0.43 TCGA-IR-A3LA-01 12 10464146 10464146 A G KLRD1 Missense_Mutation p.N83D 0.28 tolerated(0.34) benign(0) TCGA-IR-A3LA-01 12 105567170 105567170 C G APPL2 3'Flank 0.29 TCGA-IR-A3LA-01 12 106632086 106632086 G A CKAP4 3'UTR 0.44 TCGA-IR-A3LA-01 12 107125951 107125951 C T RFX4 Silent p.L474L 0.48 TCGA-IR-A3LA-01 12 11061972 11061972 G C TAS2R13 5'UTR 0.41 TCGA-IR-A3LA-01 12 111065932 111065932 G C TCTN1 Intron 0.44 TCGA-IR-A3LA-01 12 112167695 112167695 G C ACAD10 Silent p.L474L 0.57 TCGA-IR-A3LA-01 12 112602065 112602065 G A HECTD4 Silent p.T4037T 0.50 TCGA-IR-A3LA-01 12 113327880 113327880 G A RPH3A Missense_Mutation p.E539K 0.39 tolerated(0.16) benign(0.009) TCGA-IR-A3LA-01 12 113355471 113355471 G C OAS1 Missense_Mutation p.W335S 0.41 tolerated(0.44) benign(0.047) TCGA-IR-A3LA-01 12 113534597 113534597 G C DTX1 Silent p.S572S 0.49 TCGA-IR-A3LA-01 12 113618744 113618744 G A DDX54 Silent p.F98F 0.34 TCGA-IR-A3LA-01 12 113836322 113836322 G C SDS Missense_Mutation p.I141M 0.45 deleterious(0) possibly_damaging(0.806) TCGA-IR-A3LA-01 12 114839628 114839628 C T TBX5 Intron 0.26 TCGA-IR-A3LA-01 12 115114156 115114156 G A TBX3 Missense_Mutation p.S354F 0.43 deleterious(0) possibly_damaging(0.892) TCGA-IR-A3LA-01 12 11905486 11905486 G C ETV6 Missense_Mutation p.D46H 0.26 deleterious(0.01) benign(0.11) TCGA-IR-A3LA-01 12 120789175 120789175 C T MSI1 Silent p.P254P 0.52 TCGA-IR-A3LA-01 12 121426726 121426726 C T HNF1A Silent p.L139L 0.38 TCGA-IR-A3LA-01 12 121712275 121712275 C T CAMKK2 Missense_Mutation p.E19K 0.51 deleterious_low_confidence(0.01) benign(0.06) TCGA-IR-A3LA-01 12 123072416 123072416 G A KNTC1 Missense_Mutation p.E1297K 0.53 tolerated(0.41) benign(0.003) TCGA-IR-A3LA-01 12 124144781 124144781 G C GTF2H3 Nonstop_Mutation p.*309Sext*2 0.31 TCGA-IR-A3LA-01 12 12672925 12672925 C G DUSP16 Missense_Mutation p.D80H 0.52 tolerated(0.17) benign(0.205) TCGA-IR-A3LA-01 12 129178524 129178524 G A TMEM132C Missense_Mutation p.D534N 0.53 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 12 129283957 129283957 C G SLC15A4 Missense_Mutation p.E474Q 0.58 tolerated(0.06) probably_damaging(0.987) TCGA-IR-A3LA-01 12 132249087 132249087 G A SFSWAP Missense_Mutation p.D603N 0.36 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 12 132249102 132249105 GAAG AAA SFSWAP Frame_Shift_Del p.E608Kfs*25 0.31 TCGA-IR-A3LA-01 12 13256462 13256462 G A GSG1 5'UTR 0.39 TCGA-IR-A3LA-01 12 132834240 132834240 G A GALNT9 Missense_Mutation p.S15L 0.44 deleterious(0.02) possibly_damaging(0.504) TCGA-IR-A3LA-01 12 133148877 133148877 G C FBRSL1 Missense_Mutation p.D479H 0.41 deleterious(0.01) probably_damaging(0.986) TCGA-IR-A3LA-01 12 133733057 133733057 G A ZNF10 Missense_Mutation p.E409K 0.60 tolerated(0.16) benign(0.323) TCGA-IR-A3LA-01 12 14927359 14927359 G A H2AFJ 5'UTR 0.40 TCGA-IR-A3LA-01 12 14930660 14930660 G C H2AFJ 3'UTR 0.39 TCGA-IR-A3LA-01 12 18715808 18715808 C T PIK3C2G Silent p.F1213F 0.44 TCGA-IR-A3LA-01 12 25149177 25149177 C G C12orf77 Missense_Mutation p.D34H 0.39 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-IR-A3LA-01 12 31882028 31882028 G A AMN1 5'UTR 0.34 TCGA-IR-A3LA-01 12 33559988 33559988 C T SYT10 Silent p.V271V 0.29 TCGA-IR-A3LA-01 12 369036 369036 G C SLC6A13 Silent p.L61L 0.54 TCGA-IR-A3LA-01 12 39301163 39301163 G A CPNE8 5'Flank 0.38 TCGA-IR-A3LA-01 12 39730978 39730978 C T KIF21A Missense_Mutation p.E780K 0.53 deleterious(0) benign(0.119) TCGA-IR-A3LA-01 12 4554443 4554443 G C FGF6 Silent p.L98L 0.35 TCGA-IR-A3LA-01 12 45725135 45725135 G C ANO6 Missense_Mutation p.D91H 0.41 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 12 46121516 46121516 G A ARID2 5'Flank 0.20 TCGA-IR-A3LA-01 12 46753716 46753716 C T SLC38A2 3'UTR 0.20 TCGA-IR-A3LA-01 12 48107060 48107060 G C ENDOU Nonsense_Mutation p.S288* 0.42 TCGA-IR-A3LA-01 12 48174253 48174253 G C SLC48A1 3'UTR 0.38 TCGA-IR-A3LA-01 12 49721039 49721039 G A TROAP Missense_Mutation p.E273K 0.48 tolerated(0.07) benign(0.056) TCGA-IR-A3LA-01 12 5026354 5026354 G C KCNA1 3'UTR 0.35 TCGA-IR-A3LA-01 12 51504673 51504673 G C TFCP2 Missense_Mutation p.S184C 0.37 deleterious(0.01) probably_damaging(0.967) TCGA-IR-A3LA-01 12 52602151 52602151 C T C12orf80 RNA 0.52 TCGA-IR-A3LA-01 12 52758934 52758934 C G KRT85 Missense_Mutation p.Q147H 0.49 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LA-01 12 527686 527686 G C CCDC77 Missense_Mutation p.Q99H 0.46 deleterious(0.03) probably_damaging(0.973) TCGA-IR-A3LA-01 12 53553493 53553493 C A CSAD Nonsense_Mutation p.E435* 0.45 TCGA-IR-A3LA-01 12 53673569 53673569 G A ESPL1 Silent p.L806L 0.39 TCGA-IR-A3LA-01 12 53879098 53879098 C T MAP3K12 Intron 0.49 TCGA-IR-A3LA-01 12 54383746 54383746 C T HOXC10 3'UTR 0.53 TCGA-IR-A3LA-01 12 55368357 55368357 C T TESPA1 5'UTR 0.43 TCGA-IR-A3LA-01 12 56090710 56090710 G A ITGA7 Silent p.V574V 0.55 TCGA-IR-A3LA-01 12 56527950 56527950 G A ESYT1 Silent p.V520V 0.44 TCGA-IR-A3LA-01 12 56528198 56528198 G T ESYT1 Nonsense_Mutation p.E550* 0.50 TCGA-IR-A3LA-01 12 56572822 56572822 G C SMARCC2 Nonsense_Mutation p.S367* 0.44 TCGA-IR-A3LA-01 12 5672735 5672735 C G ANO2 Splice_Site p.X910_splice 0.61 TCGA-IR-A3LA-01 12 56755476 56755476 C G APOF Missense_Mutation p.E172Q 0.45 tolerated(0.14) probably_damaging(0.933) TCGA-IR-A3LA-01 12 57324159 57324159 C G SDR9C7 Silent p.L137L 0.43 TCGA-IR-A3LA-01 12 662716 662716 C G B4GALNT3 Missense_Mutation p.Q543E 0.43 tolerated(1) benign(0.013) TCGA-IR-A3LA-01 12 663003 663003 C T B4GALNT3 Silent p.F638F 0.50 TCGA-IR-A3LA-01 12 6687669 6687669 C T CHD4 Silent p.Q1675Q 0.54 TCGA-IR-A3LA-01 12 6687678 6687678 C T CHD4 Silent p.V1672V 0.54 TCGA-IR-A3LA-01 12 68055110 68055110 G C DYRK2 3'UTR 0.49 TCGA-IR-A3LA-01 12 6952233 6952233 G A GNB3 Missense_Mutation p.D66N 0.53 deleterious(0.02) possibly_damaging(0.471) TCGA-IR-A3LA-01 12 6958094 6958094 G A CDCA3 3'UTR 0.52 TCGA-IR-A3LA-01 12 6976718 6976718 C T TPI1 Silent p.L33L 0.50 TCGA-IR-A3LA-01 12 7077636 7077636 C G PHB2 Missense_Mutation p.E139Q 0.50 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 12 7290643 7290643 T C CLSTN3 Missense_Mutation p.F435L 0.50 deleterious(0) probably_damaging(0.987) TCGA-IR-A3LA-01 12 7361104 7361104 G C PEX5 Silent p.V426V 0.38 TCGA-IR-A3LA-01 12 77417214 77417214 G C E2F7 3'UTR 0.37 TCGA-IR-A3LA-01 12 78513213 78513213 C T NAV3 Silent p.I1079I 0.46 TCGA-IR-A3LA-01 12 8050863 8050863 G A NANOGP1 Intron 0.36 TCGA-IR-A3LA-01 12 80647248 80647248 C T OTOGL Missense_Mutation p.L421F 0.31 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LA-01 12 80866017 80866017 C T PTPRQ Silent p.F387F 0.19 TCGA-IR-A3LA-01 12 8234870 8234870 G A NECAP1 5'UTR 0.45 TCGA-IR-A3LA-01 12 83251179 83251179 C G TMTC2 Missense_Mutation p.H158Q 0.41 deleterious(0) possibly_damaging(0.464) TCGA-IR-A3LA-01 12 86276129 86276129 C G NTS Silent p.L163L 0.47 TCGA-IR-A3LA-01 12 95422188 95422188 C T NR2C1 Silent p.L502L 0.27 TCGA-IR-A3LA-01 12 99008094 99008094 C T IKBIP Nonsense_Mutation p.W68* 0.52 TCGA-IR-A3LA-01 12 99008106 99008106 C T IKBIP Missense_Mutation p.E104K 0.51 tolerated(0.49) possibly_damaging(0.475) TCGA-IR-A3LA-01 13 103289431 103289431 G A TPP2 Splice_Site p.X560_splice 0.57 TCGA-IR-A3LA-01 13 114538720 114538720 C G GAS6 Intron 0.80 TCGA-IR-A3LA-01 13 20240607 20240607 G C MPHOSPH8 Missense_Mutation p.E688Q 0.37 deleterious(0.03) probably_damaging(1) TCGA-IR-A3LA-01 13 20279828 20279828 G C PSPC1 Missense_Mutation p.P454A 0.20 tolerated(0.12) benign(0.002) TCGA-IR-A3LA-01 13 21395946 21395946 C T XPO4 Missense_Mutation p.R357Q 0.43 tolerated(0.15) benign(0.428) TCGA-IR-A3LA-01 13 22275734 22275734 G A FGF9 3'UTR 0.33 TCGA-IR-A3LA-01 13 23911873 23911873 C T SACS Missense_Mutation p.E2048K 0.44 probably_damaging(0.986) TCGA-IR-A3LA-01 13 25266734 25266734 C A ATP12A Silent p.I418I 0.37 TCGA-IR-A3LA-01 13 26501421 26501421 G C ATP8A2 Intron 0.62 TCGA-IR-A3LA-01 13 26974624 26974624 G A CDK8 Missense_Mutation p.R323Q 0.42 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LA-01 13 28196057 28196057 C T POLR1D 5'UTR 0.40 TCGA-IR-A3LA-01 13 30805526 30805526 G A KATNAL1 Silent p.F270F 0.36 TCGA-IR-A3LA-01 13 30829630 30829630 G C KATNAL1 Missense_Mutation p.S149C 0.36 deleterious(0.02) benign(0.285) TCGA-IR-A3LA-01 13 31717984 31717984 G C HSPH1 Missense_Mutation p.S554C 0.29 tolerated(0.1) benign(0.014) TCGA-IR-A3LA-01 13 32729667 32729667 G C FRY Missense_Mutation p.D507H 0.41 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 13 32835906 32835906 G A FRY Missense_Mutation p.E2524K 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LA-01 13 32914967 32914967 C T BRCA2 Nonsense_Mutation p.Q2159* 0.50 TCGA-IR-A3LA-01 13 33110303 33110303 G C N4BP2L2 Intron 0.35 TCGA-IR-A3LA-01 13 36050012 36050012 G A MAB21L1 Silent p.F88F 0.65 TCGA-IR-A3LA-01 13 37006087 37006087 G A CCNA1 5'Flank 0.37 TCGA-IR-A3LA-01 13 38211095 38211095 T A TRPC4 Missense_Mutation p.D965V 0.36 deleterious_low_confidence(0) benign(0.082) TCGA-IR-A3LA-01 13 38225483 38225483 G C TRPC4 Silent p.L666L 0.48 TCGA-IR-A3LA-01 13 41134033 41134033 G A FOXO1 Missense_Mutation p.S532F 0.49 tolerated(0.69) benign(0.062) TCGA-IR-A3LA-01 13 41766989 41766989 G A KBTBD7 Missense_Mutation p.P469S 0.38 tolerated(0.13) benign(0.1) TCGA-IR-A3LA-01 13 42813934 42813934 G A DGKH 3'UTR 0.38 TCGA-IR-A3LA-01 13 44948221 44948221 G A SERP2 Silent p.Q20Q 0.42 TCGA-IR-A3LA-01 13 46824540 46824540 C T LRRC63 Silent p.I380I 0.42 TCGA-IR-A3LA-01 13 46824562 46824562 C G LRRC63 Missense_Mutation p.Q388E 0.48 tolerated(0.09) possibly_damaging(0.48) TCGA-IR-A3LA-01 13 49933878 49933878 G A CAB39L Missense_Mutation p.P123S 0.49 tolerated(0.13) benign(0.021) TCGA-IR-A3LA-01 13 50205644 50205644 G C ARL11 3'UTR 0.45 TCGA-IR-A3LA-01 13 50205746 50205746 G T ARL11 3'UTR 0.44 TCGA-IR-A3LA-01 13 50275977 50275977 C G KPNA3 Missense_Mutation p.D509H 0.43 tolerated(0.06) possibly_damaging(0.603) TCGA-IR-A3LA-01 13 51943132 51943132 C T INTS6 Missense_Mutation p.E807K 0.41 tolerated(0.87) benign(0.012) TCGA-IR-A3LA-01 13 52971931 52971931 G T THSD1 Missense_Mutation p.Q153K 0.41 tolerated(0.06) benign(0.009) TCGA-IR-A3LA-01 13 73284262 73284262 G A MZT1 3'UTR 0.56 TCGA-IR-A3LA-01 13 84455448 84455448 C A SLITRK1 Silent p.L65L 0.33 TCGA-IR-A3LA-01 13 86367815 86367815 C A SLITRK6 3'UTR 0.92 TCGA-IR-A3LA-01 13 99540624 99540624 G C DOCK9 Missense_Mutation p.S656C 0.71 tolerated(0.52) benign(0.007) TCGA-IR-A3LA-01 13 99907834 99907834 C G GPR18 Missense_Mutation p.G98A 0.68 tolerated(1) benign(0.02) TCGA-IR-A3LA-01 14 102548615 102548615 G C HSP90AA1 Missense_Mutation p.S763C 0.86 deleterious_low_confidence(0) unknown(0) TCGA-IR-A3LA-01 14 104120978 104120978 C G KLC1 Missense_Mutation p.S26C 0.76 tolerated(0.13) benign(0.031) TCGA-IR-A3LA-01 14 106091357 106091357 C T IGHG4 Silent p.T179T 0.40 TCGA-IR-A3LA-01 14 19553485 19553485 G C POTEG Missense_Mutation p.K23N 0.10 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-IR-A3LA-01 14 20502384 20502384 G T OR4K13 Missense_Mutation p.F178L 0.41 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LA-01 14 20586329 20586329 C G OR4K17 Missense_Mutation p.T255S 0.07 tolerated(0.06) benign(0.247) TCGA-IR-A3LA-01 14 20757805 20757805 G A TTC5 Missense_Mutation p.S435L 0.48 tolerated(0.23) benign(0.085) TCGA-IR-A3LA-01 14 20854746 20854746 G A TEP1 Silent p.F907F 0.32 TCGA-IR-A3LA-01 14 21026810 21026810 C T RNASE9 Splice_Site 0.42 TCGA-IR-A3LA-01 14 21878105 21878105 C A CHD8 Nonsense_Mutation p.E757* 0.42 TCGA-IR-A3LA-01 14 21991423 21991423 C G SALL2 Silent p.G813G 0.43 TCGA-IR-A3LA-01 14 22102290 22102290 C T OR10G2 Missense_Mutation p.D237N 0.35 deleterious(0.01) benign(0.062) TCGA-IR-A3LA-01 14 22631549 22631549 G A TRAV29DV5 Silent p.L47L 0.43 TCGA-IR-A3LA-01 14 23392312 23392312 G A PRMT5 Missense_Mutation p.S478F 0.45 deleterious(0.02) possibly_damaging(0.905) TCGA-IR-A3LA-01 14 23743315 23743315 C T HOMEZ 3'UTR 0.48 TCGA-IR-A3LA-01 14 23863481 23863481 C G MYH6 Missense_Mutation p.K827N 0.65 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 14 24650921 24650921 G A IPO4 Missense_Mutation p.P979L 0.29 deleterious(0.03) benign(0.317) TCGA-IR-A3LA-01 14 24775198 24775198 G C CIDEB Missense_Mutation p.S161C 0.42 deleterious(0) possibly_damaging(0.866) TCGA-IR-A3LA-01 14 26917081 26917081 C G NOVA1 3'UTR 0.46 TCGA-IR-A3LA-01 14 30046592 30046592 C A PRKD1 Missense_Mutation p.S864I 0.49 deleterious(0) probably_damaging(0.99) TCGA-IR-A3LA-01 14 31542175 31542175 G A AP4S1 Missense_Mutation p.R97Q 0.44 tolerated(0.07) benign(0.148) TCGA-IR-A3LA-01 14 31582500 31582500 G A HECTD1 Missense_Mutation p.S2016L 0.65 deleterious(0.03) benign(0.027) TCGA-IR-A3LA-01 14 31863394 31863394 C G HEATR5A Missense_Mutation p.W212C 0.47 deleterious(0) probably_damaging(0.96) TCGA-IR-A3LA-01 14 33291487 33291487 G C AKAP6 Missense_Mutation p.E1490Q 0.52 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-IR-A3LA-01 14 36005778 36005778 C T INSM2 3'UTR 0.29 TCGA-IR-A3LA-01 14 38306718 38306718 G C TTC6 Intron 0.28 TCGA-IR-A3LA-01 14 39736708 39736708 C T CTAGE5 Silent p.L15L 0.47 TCGA-IR-A3LA-01 14 50101007 50101007 G A DNAAF2 Silent p.I287I 0.50 TCGA-IR-A3LA-01 14 51467440 51467440 G T TRIM9 Nonsense_Mutation p.Y475* 0.35 TCGA-IR-A3LA-01 14 53342042 53342042 C G FERMT2 Missense_Mutation p.E333Q 0.40 tolerated(0.5) possibly_damaging(0.614) TCGA-IR-A3LA-01 14 55513647 55513647 C G SOCS4 3'UTR 0.43 TCGA-IR-A3LA-01 14 58701245 58701245 G A ACTR10 Silent p.K410K 0.27 TCGA-IR-A3LA-01 14 58838696 58838696 G C ARID4A Missense_Mutation p.E1255Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LA-01 14 59789812 59789812 G C DAAM1 Missense_Mutation p.E215Q 0.52 deleterious(0) unknown(0) TCGA-IR-A3LA-01 14 62017244 62017244 C A PRKCH 3'UTR 0.55 TCGA-IR-A3LA-01 14 62203827 62203827 G A HIF1A Missense_Mutation p.D441N 0.37 tolerated(0.32) benign(0.002) TCGA-IR-A3LA-01 14 63784452 63784452 C T GPHB5 RNA 0.51 TCGA-IR-A3LA-01 14 69259700 69259700 G C ZFP36L1 5'UTR 0.50 TCGA-IR-A3LA-01 14 70713328 70713328 C A ADAM21P1 RNA 0.14 TCGA-IR-A3LA-01 14 70925266 70925266 G T ADAM21 Missense_Mutation p.Q350H 0.45 tolerated(0.56) benign(0.003) TCGA-IR-A3LA-01 14 70926021 70926021 C G ADAM21 Missense_Mutation p.S602C 0.46 deleterious(0) possibly_damaging(0.656) TCGA-IR-A3LA-01 14 73006802 73006802 G A RGS6 Silent p.V474V 0.59 TCGA-IR-A3LA-01 14 74162777 74162777 C T DNAL1 3'UTR 0.48 TCGA-IR-A3LA-01 14 74824600 74824600 G A VRTN Missense_Mutation p.E372K 0.46 tolerated(0.42) benign(0.039) TCGA-IR-A3LA-01 14 75376458 75376458 C T RPS6KL1 Missense_Mutation p.G353D 0.39 tolerated(0.41) benign(0.004) TCGA-IR-A3LA-01 14 75376468 75376468 C T RPS6KL1 Missense_Mutation p.E350K 0.41 tolerated(0.18) benign(0.025) TCGA-IR-A3LA-01 14 78217764 78217764 C G SNW1 Missense_Mutation p.M76I 0.50 deleterious(0.01) possibly_damaging(0.792) TCGA-IR-A3LA-01 14 90429894 90429894 G A TDP1 Missense_Mutation p.E146K 0.50 tolerated(0.08) benign(0.003) TCGA-IR-A3LA-01 14 92185816 92185816 C T CATSPERB Missense_Mutation p.D106N 0.35 tolerated(0.5) benign(0.043) TCGA-IR-A3LA-01 14 94417385 94417385 C G ASB2 Missense_Mutation p.Q280H 0.39 deleterious(0) probably_damaging(0.981) TCGA-IR-A3LA-01 14 94696987 94696987 C G PPP4R4 Missense_Mutation p.L120V 0.55 deleterious(0.01) possibly_damaging(0.661) TCGA-IR-A3LA-01 14 94756366 94756366 C G SERPINA10 Missense_Mutation p.E189Q 0.40 deleterious(0.04) benign(0.116) TCGA-IR-A3LA-01 14 95875614 95875614 C T LINC00341 RNA 0.36 TCGA-IR-A3LA-01 14 96864562 96864562 G C AK7 Missense_Mutation p.D86H 0.41 tolerated(0.09) benign(0.289) TCGA-IR-A3LA-01 14 96864634 96864634 G A AK7 Intron 0.42 TCGA-IR-A3LA-01 14 96864641 96864641 G C AK7 Intron 0.47 TCGA-IR-A3LA-01 15 102197235 102197235 G C TARSL2 Missense_Mutation p.S717C 0.58 tolerated(0.51) benign(0.012) TCGA-IR-A3LA-01 15 20193124 20193124 G A IGHV3OR15-7 Silent p.F48F 0.49 TCGA-IR-A3LA-01 15 23890745 23890745 C T MAGEL2 Missense_Mutation p.M112I 0.45 deleterious_low_confidence(0) benign(0.112) TCGA-IR-A3LA-01 15 24923152 24923152 C T NPAP1 Missense_Mutation p.S713F 0.48 tolerated(0.07) benign(0.004) TCGA-IR-A3LA-01 15 27572055 27572055 G C GABRG3 Missense_Mutation p.G124R 0.49 deleterious(0.03) probably_damaging(1) TCGA-IR-A3LA-01 15 28369342 28369342 G A HERC2 Silent p.I4343I 0.51 TCGA-IR-A3LA-01 15 28387979 28387979 G A HERC2 Silent p.F3846F 0.36 TCGA-IR-A3LA-01 15 31341613 31341613 G A TRPM1 Silent p.L530L 0.64 TCGA-IR-A3LA-01 15 34651268 34651268 G C LPCAT4 3'UTR 0.21 TCGA-IR-A3LA-01 15 34818401 34818401 C T GOLGA8B 3'UTR 0.26 TCGA-IR-A3LA-01 15 35045109 35045109 G T GJD2 Nonsense_Mutation p.S179* 0.68 TCGA-IR-A3LA-01 15 40241419 40241419 C G EIF2AK4 Missense_Mutation p.Q155E 0.85 tolerated(0.85) possibly_damaging(0.731) TCGA-IR-A3LA-01 15 40864067 40864067 G C RPUSD2 Missense_Mutation p.E291Q 0.80 tolerated(0.36) benign(0.223) TCGA-IR-A3LA-01 15 41011012 41011012 G A RAD51 Missense_Mutation p.D150N 0.75 tolerated(0.14) benign(0.049) TCGA-IR-A3LA-01 15 41625063 41625063 C G NUSAP1 5'Flank 0.73 TCGA-IR-A3LA-01 15 42985060 42985060 G C STARD9 Missense_Mutation p.E3762Q 0.74 possibly_damaging(0.798) TCGA-IR-A3LA-01 15 44106778 44106778 C T MFAP1 Missense_Mutation p.E180K 0.84 deleterious(0.04) possibly_damaging(0.621) TCGA-IR-A3LA-01 15 44106805 44106805 C T MFAP1 Missense_Mutation p.D171N 0.92 tolerated(0.08) possibly_damaging(0.822) TCGA-IR-A3LA-01 15 44109624 44109624 C T MFAP1 Silent p.V34V 0.69 TCGA-IR-A3LA-01 15 44120326 44120326 C G WDR76 Missense_Mutation p.S75C 0.80 deleterious(0.03) possibly_damaging(0.907) TCGA-IR-A3LA-01 15 45491047 45491047 G C SHF Missense_Mutation p.Q76E 0.66 tolerated_low_confidence(0.14) benign(0.042) TCGA-IR-A3LA-01 15 51028310 51028310 C T SPPL2A Missense_Mutation p.R307Q 0.85 deleterious(0) benign(0.163) TCGA-IR-A3LA-01 15 62146686 62146686 C T VPS13C Silent p.V3744V 0.42 TCGA-IR-A3LA-01 15 62264905 62264905 C G VPS13C Missense_Mutation p.M892I 0.42 tolerated(0.84) benign(0) TCGA-IR-A3LA-01 15 65868827 65868827 C G PTPLAD1 3'UTR 0.32 TCGA-IR-A3LA-01 15 66679581 66679581 C T MAP2K1 5'UTR 0.89 TCGA-IR-A3LA-01 15 66795497 66795497 G C RPL4 Missense_Mutation p.Q61E 0.37 deleterious(0.04) possibly_damaging(0.572) TCGA-IR-A3LA-01 15 73925521 73925521 G C NPTN Silent p.L12L 0.41 TCGA-IR-A3LA-01 15 74004016 74004016 G C CD276 Intron 0.46 TCGA-IR-A3LA-01 15 74420858 74420858 C T RP11-247C2.2 Missense_Mutation p.E79K 0.37 possibly_damaging(0.502) TCGA-IR-A3LA-01 15 76136055 76136055 C G UBE2Q2 Missense_Mutation p.I16M 0.36 tolerated(0.08) probably_damaging(0.98) TCGA-IR-A3LA-01 15 77406906 77406906 C T PEAK1 Silent p.E1611E 0.48 TCGA-IR-A3LA-01 15 77775926 77775926 G C HMG20A 3'UTR 0.34 TCGA-IR-A3LA-01 15 84652068 84652068 G A ADAMTSL3 Missense_Mutation p.D1230N 0.53 tolerated(0.69) benign(0.239) TCGA-IR-A3LA-01 15 86118455 86118455 C G AKAP13 Missense_Mutation p.I252M 0.45 deleterious(0) possibly_damaging(0.847) TCGA-IR-A3LA-01 15 89416118 89416118 G C ACAN Missense_Mutation p.E2399Q 0.31 deleterious(0) probably_damaging(0.973) TCGA-IR-A3LA-01 15 89807819 89807819 G C FANCI Missense_Mutation p.E246Q 0.20 deleterious(0.03) benign(0.209) TCGA-IR-A3LA-01 15 90016088 90016088 C G RHCG Missense_Mutation p.E440Q 0.28 tolerated(0.08) possibly_damaging(0.477) TCGA-IR-A3LA-01 15 90437158 90437158 G C AP3S2 Missense_Mutation p.F8L 0.42 deleterious(0.04) benign(0.119) TCGA-IR-A3LA-01 15 99442728 99442728 G A IGF1R Silent p.E375E 0.77 TCGA-IR-A3LA-01 15 99442734 99442734 C A IGF1R Missense_Mutation p.F377L 0.77 tolerated(0.64) possibly_damaging(0.729) TCGA-IR-A3LA-01 15 99478640 99478640 G T IGF1R Silent p.L1094L 0.69 TCGA-IR-A3LA-01 15 99482579 99482579 C G IGF1R Silent p.V1149V 0.72 TCGA-IR-A3LA-01 16 10855187 10855187 G C NUBP1 Intron 0.32 TCGA-IR-A3LA-01 16 11859530 11859530 C G ZC3H7A Missense_Mutation p.E512Q 0.61 tolerated(0.2) benign(0.322) TCGA-IR-A3LA-01 16 1259400 1259400 C T CACNA1H Silent p.D1244D 0.40 TCGA-IR-A3LA-01 16 1273501 1273501 C T TPSG1 Missense_Mutation p.R56H 0.29 tolerated(0.06) probably_damaging(0.956) TCGA-IR-A3LA-01 16 14029049 14029049 G A ERCC4 Silent p.L420L 0.45 TCGA-IR-A3LA-01 16 1470741 1470741 C G C16orf91 Intron 0.57 TCGA-IR-A3LA-01 16 1497695 1497695 C G CLCN7 Silent p.L678L 0.70 TCGA-IR-A3LA-01 16 1498455 1498455 C G CLCN7 Silent p.L638L 0.45 TCGA-IR-A3LA-01 16 15681473 15681473 G A C16orf45 3'UTR 0.33 TCGA-IR-A3LA-01 16 15715763 15715763 C G KIAA0430 Missense_Mutation p.K822N 0.43 tolerated(0.1) possibly_damaging(0.76) TCGA-IR-A3LA-01 16 16130410 16130410 C G ABCC1 Silent p.V253V 0.40 TCGA-IR-A3LA-01 16 16243928 16243928 C T ABCC6 3'UTR 0.34 TCGA-IR-A3LA-01 16 16315644 16315644 C G ABCC6 Silent p.L27L 0.48 TCGA-IR-A3LA-01 16 18820965 18820965 C T SMG1 Missense_Mutation p.D3638N 0.42 deleterious(0) benign(0.329) TCGA-IR-A3LA-01 16 18848735 18848735 G A SMG1 Silent p.L2482L 0.43 TCGA-IR-A3LA-01 16 19236108 19236108 C T SYT17 Silent p.F392F 0.39 TCGA-IR-A3LA-01 16 2029514 2029514 C T NOXO1 Missense_Mutation p.E249K 0.43 tolerated(0.1) benign(0.444) TCGA-IR-A3LA-01 16 21156659 21156659 G A DNAH3 Silent p.F97F 0.37 TCGA-IR-A3LA-01 16 2139796 2139796 C G PKD1 Missense_Mutation p.D4282H 0.55 benign(0.004) TCGA-IR-A3LA-01 16 2158445 2158445 C G PKD1 Silent p.L2241L 0.45 TCGA-IR-A3LA-01 16 2161289 2161289 G T PKD1 Silent p.V1293V 0.37 TCGA-IR-A3LA-01 16 2259503 2259503 C G BRICD5 Intron 0.48 TCGA-IR-A3LA-01 16 226682 226682 C T HBA1 5'UTR 0.21 TCGA-IR-A3LA-01 16 23619253 23619253 C G PALB2 Silent p.V1094V 0.38 TCGA-IR-A3LA-01 16 24578503 24578503 G A RBBP6 Silent p.Q543Q 0.48 TCGA-IR-A3LA-01 16 25251138 25251138 C G ZKSCAN2 Nonstop_Mutation p.*968Sext*1 0.53 TCGA-IR-A3LA-01 16 25251184 25251184 C G ZKSCAN2 Missense_Mutation p.E953Q 0.47 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-IR-A3LA-01 16 2551395 2551395 C G TBC1D24 3'UTR 0.33 TCGA-IR-A3LA-01 16 27226287 27226287 C T KDM8 Silent p.L290L 0.44 TCGA-IR-A3LA-01 16 27374353 27374353 G C IL4R Missense_Mutation p.Q560H 0.42 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LA-01 16 28619669 28619669 C T SULT1A1 Silent p.L105L 0.31 TCGA-IR-A3LA-01 16 28620067 28620067 C T SULT1A1 Missense_Mutation p.R37Q 0.30 tolerated(0.09) benign(0) TCGA-IR-A3LA-01 16 29824354 29824354 C G PRRT2 5'UTR 0.52 TCGA-IR-A3LA-01 16 30018395 30018395 G C DOC2A Missense_Mutation p.S224C 0.49 deleterious(0.01) possibly_damaging(0.525) TCGA-IR-A3LA-01 16 30077131 30077131 C T ALDOA Intron 0.36 TCGA-IR-A3LA-01 16 30106917 30106917 G C YPEL3 5'UTR 0.44 TCGA-IR-A3LA-01 16 30217335 30217335 G A RP11-347C12.3 Missense_Mutation p.S307L 0.19 deleterious_low_confidence(0) possibly_damaging(0.518) TCGA-IR-A3LA-01 16 3025764 3025764 G T PKMYT1 Nonsense_Mutation p.S143* 0.33 TCGA-IR-A3LA-01 16 30545824 30545824 C G ZNF747 Missense_Mutation p.R59S 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-IR-A3LA-01 16 30581064 30581064 C G ZNF688 3'UTR 0.38 TCGA-IR-A3LA-01 16 30751053 30751053 G A SRCAP Silent p.%3D 0.49 TCGA-IR-A3LA-01 16 31393909 31393909 C T ITGAX 3'UTR 0.44 TCGA-IR-A3LA-01 16 31500333 31500333 C T SLC5A2 Silent p.F471F 0.28 TCGA-IR-A3LA-01 16 31765084 31765084 C T ZNF720 Intron 0.53 TCGA-IR-A3LA-01 16 4738831 4738831 C T MGRN1 Silent p.L551L 0.43 TCGA-IR-A3LA-01 16 49671685 49671685 C A ZNF423 Missense_Mutation p.V460F 0.84 deleterious(0.01) possibly_damaging(0.808) TCGA-IR-A3LA-01 16 51172627 51172627 C G SALL1 Missense_Mutation p.R1169T 0.89 deleterious(0.01) benign(0.047) TCGA-IR-A3LA-01 16 53283964 53283964 C G CHD9 Missense_Mutation p.Q1283E 0.92 probably_damaging(0.995) TCGA-IR-A3LA-01 16 55523672 55523672 G C MMP2 Missense_Mutation p.K372N 0.80 deleterious(0.02) probably_damaging(0.983) TCGA-IR-A3LA-01 16 55844484 55844484 C G CES1 Missense_Mutation p.L421F 0.37 deleterious(0.05) possibly_damaging(0.51) TCGA-IR-A3LA-01 16 58319950 58319950 G A PRSS54 Missense_Mutation p.A138V 0.88 deleterious(0.02) probably_damaging(0.93) TCGA-IR-A3LA-01 16 67221525 67221525 C A EXOC3L1 Nonsense_Mutation p.E215* 0.82 TCGA-IR-A3LA-01 16 68057079 68057079 G C DDX28 Silent p.L9L 0.90 TCGA-IR-A3LA-01 16 68338091 68338091 G A SLC7A6OS Silent p.I172I 0.84 TCGA-IR-A3LA-01 16 70405280 70405280 G C DDX19A Missense_Mutation p.D397H 0.32 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 16 70557335 70557335 G A COG4 Missense_Mutation p.R38C 0.72 tolerated(0.1) benign(0.013) TCGA-IR-A3LA-01 16 70789069 70789069 C G VAC14 Intron 0.78 TCGA-IR-A3LA-01 16 71163621 71163621 T C HYDIN Silent p.R383R 0.21 TCGA-IR-A3LA-01 16 71408656 71408656 G C CALB2 Missense_Mutation p.K60N 0.67 tolerated(0.43) benign(0.309) TCGA-IR-A3LA-01 16 715190 715190 C G WDR90 Intron 0.56 TCGA-IR-A3LA-01 16 71986853 71986853 G C PKD1L3 RNA 0.79 TCGA-IR-A3LA-01 16 745029 745029 G A FBXL16 Missense_Mutation p.S397L 0.55 tolerated(0.42) benign(0.002) TCGA-IR-A3LA-01 16 75563052 75563052 C T CHST5 Missense_Mutation p.D411N 0.67 tolerated_low_confidence(0.19) possibly_damaging(0.539) TCGA-IR-A3LA-01 16 772971 772971 C T CCDC78 Silent p.L416L 0.56 TCGA-IR-A3LA-01 16 81703846 81703846 C T CMIP Nonsense_Mutation p.Q309* 0.67 TCGA-IR-A3LA-01 16 85135832 85135832 C G FAM92B Missense_Mutation p.E213D 0.79 tolerated(0.22) benign(0.26) TCGA-IR-A3LA-01 16 87872349 87872349 G A SLC7A5 Silent p.S338S 0.50 TCGA-IR-A3LA-01 17 10261124 10261124 G C MYH13 Missense_Mutation p.I222M 0.36 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 17 10297722 10297722 G A MYH8 Silent p.L1670L 0.44 TCGA-IR-A3LA-01 17 10429087 10429087 C T MYH2 Missense_Mutation p.E1432K 0.49 deleterious(0.05) benign(0.258) TCGA-IR-A3LA-01 17 10728847 10728847 G A PIRT Missense_Mutation p.S39F 0.43 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 17 11881245 11881245 G C ZNF18 3'UTR 0.35 TCGA-IR-A3LA-01 17 12046890 12046890 C G MAP2K4 3'UTR 0.28 TCGA-IR-A3LA-01 17 1371352 1371352 G C MYO1C Silent p.L942L 0.39 TCGA-IR-A3LA-01 17 1456312 1456312 G C PITPNA Missense_Mutation p.I61M 0.44 deleterious(0) probably_damaging(0.934) TCGA-IR-A3LA-01 17 1478570 1478570 G T SLC43A2 3'UTR 0.60 TCGA-IR-A3LA-01 17 16342592 16342592 C T TRPV2 3'Flank 0.43 TCGA-IR-A3LA-01 17 16456437 16456437 G A ZNF287 Missense_Mutation p.S340F 0.43 tolerated(0.64) benign(0.001) TCGA-IR-A3LA-01 17 16676931 16676931 G C CCDC144A 3'UTR 0.18 TCGA-IR-A3LA-01 17 16843713 16843713 G A TNFRSF13B Silent p.L186L 0.46 TCGA-IR-A3LA-01 17 18638431 18638431 G A TRIM16L Silent p.Q235Q 0.38 TCGA-IR-A3LA-01 17 18907093 18907093 G A FAM83G Nonsense_Mutation p.Q88* 0.34 TCGA-IR-A3LA-01 17 18967291 18967291 C G SNORD3B-2 RNA 0.10 TCGA-IR-A3LA-01 17 19091487 19091487 G C SNORD3A RNA 0.16 TCGA-IR-A3LA-01 17 19290081 19290081 C T MFAP4 Missense_Mutation p.R50Q 0.44 tolerated(0.19) benign(0.005) TCGA-IR-A3LA-01 17 1939917 1939917 C G DPH1 Silent p.L170L 0.43 TCGA-IR-A3LA-01 17 20805938 20805938 G A RP11-344E13.3 RNA 0.43 TCGA-IR-A3LA-01 17 2237775 2237775 C T TSR1 Missense_Mutation p.M324I 0.16 deleterious(0.03) benign(0.017) TCGA-IR-A3LA-01 17 2291254 2291254 G C MNT Silent p.L299L 0.40 TCGA-IR-A3LA-01 17 2585020 2585020 C T PAFAH1B1 Intron 0.39 TCGA-IR-A3LA-01 17 2585455 2585455 C T PAFAH1B1 3'UTR 0.45 TCGA-IR-A3LA-01 17 25958316 25958316 C T LGALS9 Missense_Mutation p.P9S 0.42 tolerated(0.08) benign(0.075) TCGA-IR-A3LA-01 17 26695897 26695897 G A VTN Silent p.F274F 0.39 TCGA-IR-A3LA-01 17 27038786 27038786 C T PROCA1 5'UTR 0.36 TCGA-IR-A3LA-01 17 31048064 31048064 C T MYO1D Silent p.Q630Q 0.40 TCGA-IR-A3LA-01 17 34136521 34136521 C T TAF15 5'UTR 0.65 TCGA-IR-A3LA-01 17 34797298 34797298 G A TBC1D3G 3'UTR 0.44 TCGA-IR-A3LA-01 17 34934549 34934549 C T GGNBP2 Missense_Mutation p.H260Y 0.41 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LA-01 17 3575624 3575624 G C P2RX5 3'Flank 0.54 TCGA-IR-A3LA-01 17 36214063 36214063 C T YWHAEP7 RNA 0.50 TCGA-IR-A3LA-01 17 36521268 36521268 C T SOCS7 Missense_Mutation p.P346S 0.43 tolerated(0.21) benign(0.018) TCGA-IR-A3LA-01 17 36619412 36619412 C T ARHGAP23 Nonsense_Mutation p.Q135* 0.49 TCGA-IR-A3LA-01 17 36699365 36699365 A T SRCIN1 Intron 0.32 TCGA-IR-A3LA-01 17 36876728 36876728 C G MLLT6 Silent p.L753L 0.38 TCGA-IR-A3LA-01 17 36997501 36997501 C G C17orf98 Missense_Mutation p.D48H 0.38 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 17 37006527 37006527 C T RPL23 Intron 0.59 TCGA-IR-A3LA-01 17 37330148 37330148 G A CACNB1 3'UTR 0.55 TCGA-IR-A3LA-01 17 38182491 38182491 C T MED24 Missense_Mutation p.E635K 0.47 deleterious(0.04) probably_damaging(0.914) TCGA-IR-A3LA-01 17 38785201 38785201 C T SMARCE1 Missense_Mutation p.E358K 0.34 deleterious(0.03) benign(0.095) TCGA-IR-A3LA-01 17 38787059 38787059 C T SMARCE1 Missense_Mutation p.E312K 0.45 tolerated(0.22) benign(0.292) TCGA-IR-A3LA-01 17 39079242 39079242 C T KRT23 Silent p.%3D 0.41 TCGA-IR-A3LA-01 17 39505616 39505616 G A KRT33A Missense_Mutation p.S138L 0.52 deleterious(0) benign(0.021) TCGA-IR-A3LA-01 17 39742949 39742949 G A KRT14 Silent p.Y46Y 0.32 TCGA-IR-A3LA-01 17 40091994 40091994 C T TTC25 RNA 0.47 TCGA-IR-A3LA-01 17 40705912 40705912 C A HSD17B1 Intron 0.34 TCGA-IR-A3LA-01 17 41063215 41063215 G C G6PC Missense_Mutation p.E282D 0.50 tolerated(0.35) benign(0.003) TCGA-IR-A3LA-01 17 41113211 41113211 G A AARSD1 Missense_Mutation p.S110L 0.49 deleterious(0) possibly_damaging(0.852) TCGA-IR-A3LA-01 17 42397999 42397999 G C SLC25A39 Missense_Mutation p.I264M 0.50 deleterious(0.05) benign(0.219) TCGA-IR-A3LA-01 17 42475866 42475866 G C GPATCH8 Missense_Mutation p.F1193L 0.55 tolerated(0.65) unknown(0) TCGA-IR-A3LA-01 17 42807339 42807339 G A DBF4B Missense_Mutation p.E98K 0.39 tolerated(0.08) possibly_damaging(0.61) TCGA-IR-A3LA-01 17 42857767 42857767 G A ADAM11 3'UTR 0.43 TCGA-IR-A3LA-01 17 43333177 43333177 G A SPATA32 Silent p.F124F 0.38 TCGA-IR-A3LA-01 17 4455782 4455782 C T MYBBP1A Missense_Mutation p.G234E 0.51 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 17 44625907 44625907 G C LRRC37A2 Silent p.V1134V 0.15 TCGA-IR-A3LA-01 17 44770331 44770331 G A NSF Silent p.Q336Q 0.21 TCGA-IR-A3LA-01 17 45925575 45925575 G A SP6 Missense_Mutation p.S74L 0.38 deleterious(0.01) benign(0.004) TCGA-IR-A3LA-01 17 4636385 4636385 C T MED11 Missense_Mutation p.S86L 0.43 tolerated(0.14) benign(0.009) TCGA-IR-A3LA-01 17 46622258 46622258 C A HOXB2 Nonsense_Mutation p.E6* 0.44 TCGA-IR-A3LA-01 17 46670955 46670955 C G HOXB5 Silent p.L30L 0.43 TCGA-IR-A3LA-01 17 46700118 46700118 C G HOXB9 3'UTR 0.50 TCGA-IR-A3LA-01 17 47866104 47866104 G C KAT7 5'UTR 0.44 TCGA-IR-A3LA-01 17 4800597 4800597 G C MINK1 3'UTR 0.44 TCGA-IR-A3LA-01 17 48600348 48600348 G A MYCBPAP Missense_Mutation p.E479K 0.39 deleterious(0.01) possibly_damaging(0.81) TCGA-IR-A3LA-01 17 48768463 48768463 C G ABCC3 Missense_Mutation p.L1496V 0.54 deleterious(0.02) probably_damaging(0.998) TCGA-IR-A3LA-01 17 5392930 5392930 C T MIS12 3'UTR 0.55 TCGA-IR-A3LA-01 17 5417666 5417666 G A NLRP1 3'Flank 0.50 TCGA-IR-A3LA-01 17 56051253 56051253 G C VEZF1 3'UTR 0.50 TCGA-IR-A3LA-01 17 56084522 56084522 C G SRSF1 5'UTR 0.44 TCGA-IR-A3LA-01 17 56772321 56772321 G A RAD51C Missense_Mutation p.E59K 0.34 deleterious(0) possibly_damaging(0.88) TCGA-IR-A3LA-01 17 57288710 57288710 G A SMG8 Missense_Mutation p.R433K 0.41 deleterious(0) probably_damaging(0.98) TCGA-IR-A3LA-01 17 58327077 58327077 C T USP32 Intron 0.43 TCGA-IR-A3LA-01 17 58603319 58603319 C T APPBP2 5'UTR 0.49 TCGA-IR-A3LA-01 17 58967053 58967053 C G BCAS3 Intron 0.37 TCGA-IR-A3LA-01 17 61666384 61666384 C T DCAF7 Silent p.I93I 0.72 TCGA-IR-A3LA-01 17 61790876 61790876 C G STRADA Missense_Mutation p.E80Q 0.39 tolerated(0.17) probably_damaging(0.944) TCGA-IR-A3LA-01 17 62022990 62022990 C T SCN4A Silent p.V1150V 0.46 TCGA-IR-A3LA-01 17 62510458 62510458 G A CEP95 Missense_Mutation p.E117K 0.47 deleterious(0) probably_damaging(0.972) TCGA-IR-A3LA-01 17 63198172 63198172 C G RGS9 Silent p.V346V 0.53 TCGA-IR-A3LA-01 17 68130649 68130649 C G KCNJ16 3'UTR 0.33 TCGA-IR-A3LA-01 17 7144732 7144732 C T GABARAP Missense_Mutation p.E73K 0.38 deleterious(0.01) benign(0.184) TCGA-IR-A3LA-01 17 72278037 72278037 G C DNAI2 Silent p.L27L 0.43 TCGA-IR-A3LA-01 17 72278137 72278137 G T DNAI2 Nonsense_Mutation p.E61* 0.45 TCGA-IR-A3LA-01 17 7228292 7228292 C T NEURL4 Missense_Mutation p.D547N 0.33 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LA-01 17 72283200 72283200 G C DNAI2 Missense_Mutation p.E144Q 0.45 tolerated(0.35) benign(0.018) TCGA-IR-A3LA-01 17 72858750 72858750 G A FDXR 3'UTR 0.36 TCGA-IR-A3LA-01 17 72889632 72889632 C G FADS6 Missense_Mutation p.R21P 0.45 tolerated_low_confidence(0.28) benign(0.225) TCGA-IR-A3LA-01 17 72889643 72889643 C T FADS6 Silent p.R17R 0.44 TCGA-IR-A3LA-01 17 73150528 73150528 G C HN1 5'UTR 0.26 TCGA-IR-A3LA-01 17 73208116 73208116 C T NUP85 Missense_Mutation p.S107L 0.40 deleterious(0) probably_damaging(0.986) TCGA-IR-A3LA-01 17 73733665 73733665 C T ITGB4 Silent p.L720L 0.36 TCGA-IR-A3LA-01 17 73836144 73836144 G C UNC13D Silent p.L302L 0.45 TCGA-IR-A3LA-01 17 73916448 73916448 G C FBF1 Silent p.L564L 0.35 TCGA-IR-A3LA-01 17 74019720 74019720 C T EVPL Missense_Mutation p.E72K 0.35 tolerated(0.78) benign(0.069) TCGA-IR-A3LA-01 17 74073113 74073113 C T GALR2 Silent p.L255L 0.43 TCGA-IR-A3LA-01 17 74073178 74073178 C G GALR2 Missense_Mutation p.S277W 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-IR-A3LA-01 17 74133686 74133686 G A FOXJ1 Silent p.P338P 0.42 TCGA-IR-A3LA-01 17 74276491 74276491 G A QRICH2 Silent p.V1335V 0.36 TCGA-IR-A3LA-01 17 74721712 74721712 C T JMJD6 Missense_Mutation p.E119K 0.42 tolerated(0.12) benign(0.01) TCGA-IR-A3LA-01 17 74722527 74722527 C T JMJD6 Missense_Mutation p.E11K 0.50 tolerated(0.22) benign(0.037) TCGA-IR-A3LA-01 17 74722559 74722559 C T JMJD6 5'UTR 0.52 TCGA-IR-A3LA-01 17 74730976 74730976 G A SRSF2 3'UTR 0.47 TCGA-IR-A3LA-01 17 74733072 74733072 G A SRSF2 Silent p.F57F 0.44 TCGA-IR-A3LA-01 17 74735031 74735031 C T MFSD11 Silent p.I36I 0.45 TCGA-IR-A3LA-01 17 74740547 74740547 G A MFSD11 Missense_Mutation p.E214K 0.40 tolerated(0.69) benign(0.011) TCGA-IR-A3LA-01 17 7492582 7492582 C G SOX15 Missense_Mutation p.R138T 0.36 tolerated_low_confidence(0.47) benign(0.016) TCGA-IR-A3LA-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.43 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 17 7578269 7578269 G A TP53 Missense_Mutation p.L194F 0.49 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 17 76113951 76113951 G A TMC6 Silent p.V651V 0.40 TCGA-IR-A3LA-01 17 76193268 76193268 G A AFMID Intron 0.45 TCGA-IR-A3LA-01 17 76482068 76482068 C G DNAH17 Missense_Mutation p.E2403Q 0.34 benign(0.091) TCGA-IR-A3LA-01 17 76887930 76887930 G A DDC8 Missense_Mutation p.P219L 0.41 tolerated(0.12) benign(0.042) TCGA-IR-A3LA-01 17 7695367 7695367 G A DNAH2 Missense_Mutation p.E2345K 0.57 probably_damaging(0.95) TCGA-IR-A3LA-01 17 7721144 7721144 G C DNAH2 Silent p.L3402L 0.38 TCGA-IR-A3LA-01 17 78318879 78318879 G C RNF213 Missense_Mutation p.K2248N 0.40 probably_damaging(0.999) TCGA-IR-A3LA-01 17 78319163 78319163 G C RNF213 Missense_Mutation p.R2343T 0.34 benign(0.05) TCGA-IR-A3LA-01 17 78320023 78320023 G A RNF213 Missense_Mutation p.E2630K 0.27 benign(0.01) TCGA-IR-A3LA-01 17 78858868 78858868 G A RPTOR Missense_Mutation p.D635N 0.35 tolerated(0.11) probably_damaging(0.962) TCGA-IR-A3LA-01 17 78972194 78972194 C T CHMP6 Missense_Mutation p.S175F 0.40 deleterious(0) possibly_damaging(0.639) TCGA-IR-A3LA-01 17 79005113 79005113 C G BAIAP2 5'Flank 0.35 TCGA-IR-A3LA-01 17 79410194 79410194 G A RP11-1055B8.7 Missense_Mutation p.D607N 0.46 probably_damaging(0.995) TCGA-IR-A3LA-01 17 79512804 79512804 C T C17orf70 Missense_Mutation p.D760N 0.39 tolerated(0.06) benign(0.089) TCGA-IR-A3LA-01 17 79648864 79648864 G C ARL16 Missense_Mutation p.I156M 0.53 tolerated(0.34) benign(0.032) TCGA-IR-A3LA-01 17 79863284 79863284 C T PCYT2 Missense_Mutation p.D333N 0.28 tolerated(0.06) benign(0.031) TCGA-IR-A3LA-01 17 79991768 79991768 G T RAC3 3'UTR 0.25 TCGA-IR-A3LA-01 17 80040815 80040815 C T FASN Silent p.L1914L 0.35 TCGA-IR-A3LA-01 17 80041075 80041075 C T FASN Intron 0.37 TCGA-IR-A3LA-01 17 80400180 80400180 C G HEXDC Silent p.L490L 0.49 TCGA-IR-A3LA-01 17 8045610 8045610 C T PER1 Missense_Mutation p.M1142I 0.40 deleterious(0) probably_damaging(0.921) TCGA-IR-A3LA-01 17 80559592 80559592 C G FOXK2 3'UTR 0.36 TCGA-IR-A3LA-01 17 80559807 80559807 C G FOXK2 3'UTR 0.37 TCGA-IR-A3LA-01 17 8397165 8397165 C G MYH10 Silent p.L1365L 0.53 TCGA-IR-A3LA-01 17 9536263 9536263 C A WDR16 Silent p.V411V 0.41 TCGA-IR-A3LA-01 18 11999180 11999180 C T IMPA2 Missense_Mutation p.S75L 0.54 deleterious(0.02) benign(0.097) TCGA-IR-A3LA-01 18 12122443 12122443 C G ANKRD62 Missense_Mutation p.S461C 0.29 deleterious(0) possibly_damaging(0.869) TCGA-IR-A3LA-01 18 12363814 12363814 C G AFG3L2 Silent p.V198V 0.31 TCGA-IR-A3LA-01 18 12948180 12948180 C T SEH1L Silent p.F20F 0.61 TCGA-IR-A3LA-01 18 13731787 13731787 G C RNMT Missense_Mutation p.E91Q 0.38 deleterious(0.02) possibly_damaging(0.848) TCGA-IR-A3LA-01 18 13885164 13885164 G C MC2R Missense_Mutation p.I118M 0.31 tolerated(0.28) probably_damaging(0.999) TCGA-IR-A3LA-01 18 19109341 19109341 C G ESCO1 3'UTR 0.50 TCGA-IR-A3LA-01 18 24127690 24127690 C G KCTD1 Intron 0.75 TCGA-IR-A3LA-01 18 3255744 3255744 G A MYL12A Missense_Mutation p.G115D 0.74 deleterious(0.01) possibly_damaging(0.894) TCGA-IR-A3LA-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.79 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 18 52586544 52586544 C G CCDC68 Silent p.V249V 0.77 TCGA-IR-A3LA-01 18 59854711 59854711 G A KIAA1468 5'UTR 0.81 TCGA-IR-A3LA-01 18 77170762 77170762 G A NFATC1 Missense_Mutation p.E150K 0.72 deleterious(0) possibly_damaging(0.67) TCGA-IR-A3LA-01 19 10254660 10254660 G C DNMT1 Missense_Mutation p.I966M 0.29 tolerated(0.29) benign(0.132) TCGA-IR-A3LA-01 19 10468252 10468252 G A TYK2 Intron 0.33 TCGA-IR-A3LA-01 19 11101918 11101918 C T SMARCA4 Silent p.S446S 0.56 TCGA-IR-A3LA-01 19 11529983 11529983 C A RGL3 5'UTR 0.27 TCGA-IR-A3LA-01 19 11617188 11617188 C T ECSIT Silent p.T369T 0.55 TCGA-IR-A3LA-01 19 11685968 11685968 G A ACP5 Silent p.L279L 0.47 TCGA-IR-A3LA-01 19 11979141 11979141 C G ZNF439 Missense_Mutation p.F419L 0.43 deleterious(0.04) benign(0.089) TCGA-IR-A3LA-01 19 12091047 12091047 T C ZNF763 3'UTR 0.64 TCGA-IR-A3LA-01 19 12256835 12256835 C G ZNF625 Missense_Mutation p.Q132H 0.45 deleterious(0.01) probably_damaging(0.977) TCGA-IR-A3LA-01 19 12739205 12739205 C T ZNF791 Nonsense_Mutation p.R288* 0.45 TCGA-IR-A3LA-01 19 12841840 12841840 C T C19orf43 Missense_Mutation p.E156K 0.44 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 19 12954416 12954416 G A MAST1 Missense_Mutation p.V108I 0.36 tolerated(0.07) benign(0.061) TCGA-IR-A3LA-01 19 13033634 13033634 C T FARSA Silent p.Q485Q 0.34 TCGA-IR-A3LA-01 19 13059322 13059322 C G RAD23A Missense_Mutation p.S143C 0.68 tolerated(0.07) possibly_damaging(0.861) TCGA-IR-A3LA-01 19 14517945 14517945 C T CD97 Silent p.F760F 0.37 TCGA-IR-A3LA-01 19 15164631 15164631 C T CASP14 Missense_Mutation p.H89Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 19 15198871 15198871 G C OR1I1 Missense_Mutation p.R332T 0.39 tolerated_low_confidence(0.15) possibly_damaging(0.587) TCGA-IR-A3LA-01 19 15807267 15807267 G C CYP4F12 Missense_Mutation p.E448Q 0.47 deleterious(0.02) possibly_damaging(0.483) TCGA-IR-A3LA-01 19 16263369 16263369 G A HSH2D Silent p.L12L 0.44 TCGA-IR-A3LA-01 19 16263980 16263980 G C HSH2D 3'UTR 0.42 TCGA-IR-A3LA-01 19 16631499 16631499 C G C19orf44 3'UTR 0.33 TCGA-IR-A3LA-01 19 16890254 16890254 C T NWD1 Silent p.I903I 0.46 TCGA-IR-A3LA-01 19 17405543 17405543 G A ABHD8 Silent p.F291F 0.56 TCGA-IR-A3LA-01 19 17405645 17405645 G A ABHD8 Silent p.F257F 0.27 TCGA-IR-A3LA-01 19 17738365 17738365 C T UNC13A Silent p.V1291V 0.39 TCGA-IR-A3LA-01 19 17937478 17937478 G C JAK3 3'UTR 0.45 TCGA-IR-A3LA-01 19 18255336 18255336 C G MAST3 Missense_Mutation p.S853C 0.43 deleterious_low_confidence(0.02) benign(0.037) TCGA-IR-A3LA-01 19 18418061 18418061 C A LSM4 3'UTR 0.64 TCGA-IR-A3LA-01 19 18632761 18632761 C G ELL Silent p.L35L 0.38 TCGA-IR-A3LA-01 19 18857921 18857921 G A CRTC1 Missense_Mutation p.R163K 0.34 deleterious(0.01) probably_damaging(0.933) TCGA-IR-A3LA-01 19 19049830 19049830 G C HOMER3 5'UTR 0.46 TCGA-IR-A3LA-01 19 23835897 23835897 G A ZNF675 3'UTR 0.45 TCGA-IR-A3LA-01 19 2425898 2425898 G T TIMM13 3'UTR 0.41 TCGA-IR-A3LA-01 19 2511795 2511795 G A GNG7 3'UTR 0.45 TCGA-IR-A3LA-01 19 2765192 2765192 G C SGTA Missense_Mutation p.F128L 0.35 deleterious(0.01) possibly_damaging(0.677) TCGA-IR-A3LA-01 19 29698958 29698958 C T UQCRFS1 Missense_Mutation p.E108K 0.17 tolerated(0.12) possibly_damaging(0.496) TCGA-IR-A3LA-01 19 2986844 2986844 G C TLE6 Missense_Mutation p.Q80H 0.51 tolerated(0.16) possibly_damaging(0.891) TCGA-IR-A3LA-01 19 31039367 31039367 G A ZNF536 Missense_Mutation p.M947I 0.44 tolerated(0.4) benign(0) TCGA-IR-A3LA-01 19 34712417 34712417 G A LSM14A Missense_Mutation p.R381Q 0.40 tolerated(0.07) benign(0.082) TCGA-IR-A3LA-01 19 34960546 34960546 G A UBA2 3'UTR 0.29 TCGA-IR-A3LA-01 19 36217210 36217210 G C KMT2B Missense_Mutation p.G1320A 0.48 probably_damaging(0.981) TCGA-IR-A3LA-01 19 36303700 36303700 C T PRODH2 Missense_Mutation p.R79Q 0.38 tolerated_low_confidence(0.24) benign(0.003) TCGA-IR-A3LA-01 19 36499634 36499634 C T SYNE4 5'UTR 0.50 TCGA-IR-A3LA-01 19 37399292 37399292 G A ZNF829 Nonsense_Mutation p.Q137* 0.40 TCGA-IR-A3LA-01 19 37853492 37853492 G A HKR1 Silent p.K265K 0.50 TCGA-IR-A3LA-01 19 38860841 38860841 C T CATSPERG Silent p.F1052F 0.47 TCGA-IR-A3LA-01 19 39220794 39220794 C A ACTN4 3'UTR 0.23 TCGA-IR-A3LA-01 19 40411960 40411960 G T FCGBP Missense_Mutation p.S1223Y 0.36 probably_damaging(0.997) TCGA-IR-A3LA-01 19 40723221 40723221 G C TTC9B Silent p.L161L 0.39 TCGA-IR-A3LA-01 19 41930905 41930905 C T BCKDHA 3'UTR 0.62 TCGA-IR-A3LA-01 19 42411341 42411341 G A ARHGEF1 3'UTR 0.66 TCGA-IR-A3LA-01 19 42820827 42820827 C T TMEM145 Silent p.F247F 0.38 TCGA-IR-A3LA-01 19 42830207 42830207 C G MEGF8 5'UTR 0.38 TCGA-IR-A3LA-01 19 43257302 43257302 C T PSG8 3'Flank 0.49 TCGA-IR-A3LA-01 19 43373185 43373185 C T PSG1 Silent p.P237P 0.44 TCGA-IR-A3LA-01 19 43762085 43762085 G A PSG9 Intron 0.53 TCGA-IR-A3LA-01 19 44056964 44056964 G A XRCC1 Missense_Mutation p.P270S 0.46 tolerated(0.89) benign(0.002) TCGA-IR-A3LA-01 19 44661172 44661172 C G ZNF234 Missense_Mutation p.Q335E 0.45 deleterious(0.04) probably_damaging(0.932) TCGA-IR-A3LA-01 19 45262770 45262770 C G BCL3 Missense_Mutation p.F421L 0.50 deleterious_low_confidence(0.04) unknown(0) TCGA-IR-A3LA-01 19 46093930 46093930 G C GPR4 3'UTR 0.34 TCGA-IR-A3LA-01 19 47228116 47228116 G A STRN4 Silent p.C521C 0.40 TCGA-IR-A3LA-01 19 47258885 47258885 G C FKRP Missense_Mutation p.D60H 0.40 deleterious(0) possibly_damaging(0.808) TCGA-IR-A3LA-01 19 4772253 4772253 C G MIR7-3HG RNA 0.34 TCGA-IR-A3LA-01 19 4772266 4772266 C T MIR7-3HG RNA 0.32 TCGA-IR-A3LA-01 19 4772312 4772312 C G MIR7-3HG RNA 0.40 TCGA-IR-A3LA-01 19 47725144 47725144 G A BBC3 Silent p.L200L 0.29 TCGA-IR-A3LA-01 19 47774924 47774924 G A CCDC9 Missense_Mutation p.E529K 0.20 tolerated_low_confidence(0.31) unknown(0) TCGA-IR-A3LA-01 19 48789654 48789654 G A ZNF114 Missense_Mutation p.R258K 0.67 tolerated(0.93) benign(0.067) TCGA-IR-A3LA-01 19 48789971 48789971 G A ZNF114 Missense_Mutation p.E364K 0.33 tolerated(1) possibly_damaging(0.621) TCGA-IR-A3LA-01 19 48886469 48886469 C T KDELR1 3'UTR 0.41 TCGA-IR-A3LA-01 19 48965260 48965260 C G KCNJ14 Missense_Mutation p.F93L 0.38 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 19 50412866 50412866 G C NUP62 Missense_Mutation p.P67A 0.33 tolerated(0.11) probably_damaging(0.991) TCGA-IR-A3LA-01 19 50965290 50965290 G A MYBPC2 Silent p.P1075P 0.42 TCGA-IR-A3LA-01 19 51125498 51125498 G - SYT3 3'UTR 0.41 TCGA-IR-A3LA-01 19 5144886 5144886 C T KDM4B Silent p.I998I 0.51 TCGA-IR-A3LA-01 19 51835787 51835787 C T VSIG10L 3'UTR 0.41 TCGA-IR-A3LA-01 19 5219479 5219479 C T PTPRS Splice_Site p.X1256_splice 0.49 TCGA-IR-A3LA-01 19 52443915 52443915 G A ZNF613 Missense_Mutation p.G63E 0.36 tolerated(0.12) benign(0.093) TCGA-IR-A3LA-01 19 53911453 53911453 C T ZNF765 Silent p.F215F 0.42 TCGA-IR-A3LA-01 19 54313719 54313719 G A NLRP12 Silent p.F398F 0.45 TCGA-IR-A3LA-01 19 54677796 54677796 C T MBOAT7 Missense_Mutation p.R454Q 0.47 tolerated(0.06) benign(0) TCGA-IR-A3LA-01 19 5562149 5562149 C G TINCR RNA 0.37 TCGA-IR-A3LA-01 19 5600247 5600247 C G SAFB2 Missense_Mutation p.K528N 0.33 deleterious(0.02) possibly_damaging(0.87) TCGA-IR-A3LA-01 19 56028751 56028751 G C SSC5D Missense_Mutation p.L1036F 0.24 benign(0.206) TCGA-IR-A3LA-01 19 56220264 56220264 C G NLRP9 3'UTR 0.52 TCGA-IR-A3LA-01 19 56539277 56539277 G T NLRP5 Nonsense_Mutation p.E560* 0.52 TCGA-IR-A3LA-01 19 56935048 56935048 C T ZNF583 Nonsense_Mutation p.Q341* 0.52 TCGA-IR-A3LA-01 19 56953219 56953219 C G ZNF667 Missense_Mutation p.G382A 0.44 deleterious(0.02) benign(0.122) TCGA-IR-A3LA-01 19 57766148 57766148 C T ZNF805 3'Flank 0.36 TCGA-IR-A3LA-01 19 577839 577839 G T BSG Nonsense_Mutation p.E45* 0.47 TCGA-IR-A3LA-01 19 5784106 5784106 G C CTB-54O9.9 3'UTR 0.40 TCGA-IR-A3LA-01 19 5786824 5786824 G C DUS3L Silent p.T474T 0.31 TCGA-IR-A3LA-01 19 58058322 58058322 C G ZNF550 3'UTR 0.48 TCGA-IR-A3LA-01 19 58152132 58152132 G C ZNF211 Missense_Mutation p.R158T 0.53 tolerated(0.13) benign(0.027) TCGA-IR-A3LA-01 19 58197986 58197986 G C ZNF551 Missense_Mutation p.D115H 0.32 deleterious(0) possibly_damaging(0.596) TCGA-IR-A3LA-01 19 58198826 58198826 G C ZNF551 Missense_Mutation p.E395Q 0.45 tolerated(0.17) benign(0.442) TCGA-IR-A3LA-01 19 58290285 58290285 C T ZNF586 Silent p.H110H 0.31 TCGA-IR-A3LA-01 19 58290446 58290446 C T ZNF586 Missense_Mutation p.S164L 0.26 tolerated(0.24) benign(0.004) TCGA-IR-A3LA-01 19 58579631 58579631 C G ZNF135 Silent p.L617L 0.32 TCGA-IR-A3LA-01 19 58601751 58601751 G A ZSCAN18 Silent p.L18L 0.90 TCGA-IR-A3LA-01 19 58806708 58806708 C G ZNF8 Missense_Mutation p.L512V 0.47 deleterious(0.01) benign(0.118) TCGA-IR-A3LA-01 19 59061167 59061167 C T TRIM28 Silent p.L682L 0.40 TCGA-IR-A3LA-01 19 617134 617134 G A HCN2 3'UTR 0.47 TCGA-IR-A3LA-01 19 6828465 6828465 G A VAV1 Silent p.K353K 0.42 TCGA-IR-A3LA-01 19 6960346 6960346 G C EMR4P RNA 0.49 TCGA-IR-A3LA-01 19 7051440 7051440 G A MBD3L2 Missense_Mutation p.R145Q 0.08 tolerated(1) benign(0.001) TCGA-IR-A3LA-01 19 7671380 7671380 G T CAMSAP3 Nonsense_Mutation p.E182* 0.44 TCGA-IR-A3LA-01 19 8027315 8027315 C G ELAVL1 3'UTR 0.35 TCGA-IR-A3LA-01 19 855775 855775 G A ELANE Missense_Mutation p.R193Q 0.23 tolerated(0.08) possibly_damaging(0.652) TCGA-IR-A3LA-01 19 9065029 9065029 G A MUC16 Missense_Mutation p.P7473S 0.43 unknown(0) TCGA-IR-A3LA-01 19 9071439 9071439 G A MUC16 Missense_Mutation p.S5336F 0.40 unknown(0) TCGA-IR-A3LA-01 19 9077593 9077593 G C MUC16 Missense_Mutation p.L3285V 0.42 unknown(0) TCGA-IR-A3LA-01 19 9435051 9435051 C G ZNF559 5'UTR 0.42 TCGA-IR-A3LA-01 1 100181193 100181193 G A FRRS1 Silent p.L424L 0.36 TCGA-IR-A3LA-01 1 100586960 100586960 G A SASS6 Missense_Mutation p.L153F 0.29 deleterious(0) probably_damaging(0.981) TCGA-IR-A3LA-01 1 103348829 103348829 C T COL11A1 Missense_Mutation p.D1633N 0.39 unknown(0) TCGA-IR-A3LA-01 1 1078148 1078148 G A RP11-465B22.5 RNA 0.54 TCGA-IR-A3LA-01 1 109715107 109715107 C G KIAA1324 Intron 0.48 TCGA-IR-A3LA-01 1 110471880 110471880 G C CSF1 3'UTR 0.43 TCGA-IR-A3LA-01 1 1109713 1109713 C T TTLL10 Intron 0.49 TCGA-IR-A3LA-01 1 111490531 111490531 G A LRIF1 3'UTR 0.32 TCGA-IR-A3LA-01 1 111494338 111494338 G C LRIF1 Missense_Mutation p.P390A 0.50 tolerated(0.69) possibly_damaging(0.908) TCGA-IR-A3LA-01 1 111828615 111828615 G A CHIA 5'Flank 0.43 TCGA-IR-A3LA-01 1 112303170 112303170 G C DDX20 Missense_Mutation p.D214H 0.39 deleterious(0) probably_damaging(0.946) TCGA-IR-A3LA-01 1 114483792 114483792 C G HIPK1 Missense_Mutation p.H263D 0.43 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 1 114680230 114680230 C G SYT6 Missense_Mutation p.D235H 0.54 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 1 115537329 115537329 C T SYCP1 Missense_Mutation p.S905L 0.35 tolerated(0.06) possibly_damaging(0.728) TCGA-IR-A3LA-01 1 116574045 116574045 G C SLC22A15 Missense_Mutation p.E263Q 0.43 tolerated(0.31) benign(0.255) TCGA-IR-A3LA-01 1 118483799 118483799 G C WDR3 Missense_Mutation p.R281T 0.38 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 1 120168533 120168533 G C ZNF697 Nonsense_Mutation p.S64* 0.46 TCGA-IR-A3LA-01 1 1217634 1217634 C G SCNN1D Missense_Mutation p.S97C 0.33 deleterious_low_confidence(0) benign(0.005) TCGA-IR-A3LA-01 1 12266884 12266884 C A TNFRSF1B Missense_Mutation p.S398Y 0.41 deleterious(0.01) possibly_damaging(0.885) TCGA-IR-A3LA-01 1 1269217 1269217 C G TAS1R3 Silent p.L644L 0.55 TCGA-IR-A3LA-01 1 12884760 12884760 G T PRAMEF11 3'UTR 0.33 TCGA-IR-A3LA-01 1 12884934 12884934 G C PRAMEF11 Missense_Mutation p.Q393E 0.38 tolerated(0.07) benign(0.138) TCGA-IR-A3LA-01 1 12885022 12885022 G C PRAMEF11 Missense_Mutation p.I363M 0.38 tolerated(0.14) possibly_damaging(0.672) TCGA-IR-A3LA-01 1 12885048 12885048 G C PRAMEF11 Missense_Mutation p.L355V 0.42 tolerated(0.13) probably_damaging(0.998) TCGA-IR-A3LA-01 1 12921378 12921378 C T PRAMEF2 Missense_Mutation p.S390F 0.43 deleterious(0.02) probably_damaging(0.913) TCGA-IR-A3LA-01 1 13448422 13448422 G C PRAMEF13 Silent p.L351L 0.31 TCGA-IR-A3LA-01 1 143744275 143744275 G C RP6-206I17.1 RNA 0.12 TCGA-IR-A3LA-01 1 144931726 144931726 G A PDE4DIP Intron 0.12 TCGA-IR-A3LA-01 1 145579296 145579296 C G PIAS3 Silent p.L211L 0.35 TCGA-IR-A3LA-01 1 145584227 145584227 G A PIAS3 Missense_Mutation p.D460N 0.23 tolerated(0.07) benign(0.334) TCGA-IR-A3LA-01 1 145606277 145606277 C G POLR3C Missense_Mutation p.E226Q 0.50 tolerated(0.17) benign(0.093) TCGA-IR-A3LA-01 1 149859034 149859034 G C HIST2H2AB 3'UTR 0.40 TCGA-IR-A3LA-01 1 149903282 149903282 G A MTMR11 Missense_Mutation p.S387L 0.41 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 1 149921607 149921607 G A OTUD7B Silent p.L350L 0.56 TCGA-IR-A3LA-01 1 150048382 150048382 G C VPS45 Missense_Mutation p.E121Q 0.39 deleterious(0.04) probably_damaging(0.919) TCGA-IR-A3LA-01 1 150390097 150390097 C G RPRD2 Silent p.L77L 0.30 TCGA-IR-A3LA-01 1 150444968 150444968 C T RPRD2 Missense_Mutation p.R1182C 0.38 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-IR-A3LA-01 1 150445007 150445007 C T RPRD2 Missense_Mutation p.P1195S 0.43 deleterious_low_confidence(0.03) benign(0.166) TCGA-IR-A3LA-01 1 150525585 150525585 C T ADAMTSL4 Missense_Mutation p.P97L 0.41 tolerated(0.05) possibly_damaging(0.747) TCGA-IR-A3LA-01 1 150671161 150671161 C G HORMAD1 Missense_Mutation p.R385T 0.25 deleterious(0) probably_damaging(0.963) TCGA-IR-A3LA-01 1 151039932 151039932 C T MLLT11 Missense_Mutation p.P78S 0.53 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 1 152084508 152084508 C G TCHH Silent p.L395L 0.28 TCGA-IR-A3LA-01 1 152382132 152382132 C T CRNN Missense_Mutation p.E476K 0.31 deleterious(0.05) benign(0.097) TCGA-IR-A3LA-01 1 152573352 152573352 G A LCE3C Missense_Mutation p.E49K 0.30 deleterious_low_confidence(0.02) unknown(0) TCGA-IR-A3LA-01 1 153580076 153580076 C G S100A16 Missense_Mutation p.L82F 0.41 tolerated(0.06) possibly_damaging(0.503) TCGA-IR-A3LA-01 1 153736609 153736609 G C INTS3 Missense_Mutation p.E613Q 0.39 tolerated(0.09) possibly_damaging(0.794) TCGA-IR-A3LA-01 1 153935074 153935074 G A SLC39A1 Missense_Mutation p.L40F 0.59 deleterious(0.02) probably_damaging(0.996) TCGA-IR-A3LA-01 1 153946137 153946137 C T CREB3L4 Silent p.F313F 0.38 TCGA-IR-A3LA-01 1 154904829 154904829 T A PMVK Missense_Mutation p.Q53L 0.42 tolerated(0.07) benign(0.002) TCGA-IR-A3LA-01 1 154960571 154960571 C G FLAD1 Intron 0.38 TCGA-IR-A3LA-01 1 154987929 154987929 G A ZBTB7B Missense_Mutation p.E299K 0.50 tolerated(0.25) possibly_damaging(0.801) TCGA-IR-A3LA-01 1 155300518 155300518 C G RUSC1 3'UTR 0.33 TCGA-IR-A3LA-01 1 15541866 15541866 G A TMEM51 Missense_Mutation p.E95K 0.40 deleterious(0.05) possibly_damaging(0.563) TCGA-IR-A3LA-01 1 155939012 155939012 G C ARHGEF2 Nonsense_Mutation p.S48* 0.46 TCGA-IR-A3LA-01 1 156263336 156263336 G A C1orf85 Missense_Mutation p.S277L 0.50 tolerated(0.26) benign(0.005) TCGA-IR-A3LA-01 1 156446854 156446854 C A MEF2D Missense_Mutation p.D269Y 0.50 deleterious(0) probably_damaging(0.979) TCGA-IR-A3LA-01 1 156770171 156770171 G A PRCC Silent p.K465K 0.53 TCGA-IR-A3LA-01 1 156770172 156770172 G T PRCC Nonsense_Mutation p.E466* 0.54 TCGA-IR-A3LA-01 1 156921453 156921453 C G ARHGEF11 Missense_Mutation p.E613Q 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-IR-A3LA-01 1 15820256 15820256 C T CASP9 Intron 0.34 TCGA-IR-A3LA-01 1 158325754 158325754 C T CD1E Nonsense_Mutation p.Q255* 0.48 TCGA-IR-A3LA-01 1 1588857 1588857 C G CDK11B Missense_Mutation p.E27Q 0.38 probably_damaging(0.932) TCGA-IR-A3LA-01 1 159897978 159897978 C T IGSF9 Missense_Mutation p.R1067Q 0.48 tolerated(0.09) possibly_damaging(0.895) TCGA-IR-A3LA-01 1 160184732 160184752 CGTGCCCTGCCCCTCTGGCCA - PEA15 3'UTR 0.50 TCGA-IR-A3LA-01 1 16064484 16064484 C G SLC25A34 Missense_Mutation p.H147D 0.48 deleterious(0) probably_damaging(0.971) TCGA-IR-A3LA-01 1 161494355 161494355 G C HSPA6 5'UTR 0.48 TCGA-IR-A3LA-01 1 16161772 16161772 C T RP11-169K16.9 RNA 0.45 TCGA-IR-A3LA-01 1 16266529 16266529 G T SPEN 3'UTR 0.47 TCGA-IR-A3LA-01 1 16535523 16535523 G C ARHGEF19 Silent p.L9L 0.44 TCGA-IR-A3LA-01 1 167825584 167825584 G C ADCY10 Missense_Mutation p.L664V 0.48 tolerated(1) benign(0.002) TCGA-IR-A3LA-01 1 169434769 169434769 C T SLC19A2 3'UTR 0.37 TCGA-IR-A3LA-01 1 171753007 171753007 G A METTL13 Missense_Mutation p.R94Q 0.30 tolerated(0.14) benign(0.046) TCGA-IR-A3LA-01 1 173743497 173743497 G T KLHL20 Missense_Mutation p.R450I 0.51 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 1 174957856 174957856 G C RABGAP1L Missense_Mutation p.E269Q 0.45 tolerated(0.35) benign(0.014) TCGA-IR-A3LA-01 1 174959019 174959019 G C RABGAP1L Missense_Mutation p.E320Q 0.38 tolerated(0.2) probably_damaging(0.991) TCGA-IR-A3LA-01 1 174983634 174983634 G A MRPS14 3'UTR 0.36 TCGA-IR-A3LA-01 1 17567243 17567243 C T PADI1 Silent p.F582F 0.47 TCGA-IR-A3LA-01 1 176999980 176999980 G C ASTN1 Missense_Mutation p.S325C 0.46 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-IR-A3LA-01 1 179311213 179311213 C G SOAT1 Intron 0.43 TCGA-IR-A3LA-01 1 179503992 179503992 G A AXDND1 Missense_Mutation p.E976K 0.46 tolerated(0.54) unknown(0) TCGA-IR-A3LA-01 1 183520229 183520229 G A SMG7 Silent p.E1072E 0.39 TCGA-IR-A3LA-01 1 183907829 183907829 G A COLGALT2 3'UTR 0.23 TCGA-IR-A3LA-01 1 185175784 185175784 C T SWT1 Silent p.L621L 0.43 TCGA-IR-A3LA-01 1 19683230 19683230 G A CAPZB Missense_Mutation p.R163C 0.56 deleterious(0) possibly_damaging(0.868) TCGA-IR-A3LA-01 1 197115342 197115342 C T ASPM Missense_Mutation p.E76K 0.49 deleterious(0.03) benign(0.107) TCGA-IR-A3LA-01 1 198701647 198701647 G C PTPRC Missense_Mutation p.D702H 0.29 deleterious(0) probably_damaging(0.987) TCGA-IR-A3LA-01 1 19981643 19981643 C T MINOS1-NBL1 Silent p.I40I 0.14 TCGA-IR-A3LA-01 1 200828563 200828563 A T CAMSAP2 3'UTR 0.53 TCGA-IR-A3LA-01 1 201781717 201781717 G A NAV1 Missense_Mutation p.D1717N 0.47 deleterious(0.03) probably_damaging(0.995) TCGA-IR-A3LA-01 1 201984422 201984422 G A ELF3 Missense_Mutation p.E363K 0.36 tolerated(0.17) possibly_damaging(0.765) TCGA-IR-A3LA-01 1 202302443 202302443 G A UBE2T Silent p.L102L 0.36 TCGA-IR-A3LA-01 1 202897728 202897728 G C KLHL12 5'Flank 0.36 TCGA-IR-A3LA-01 1 203139453 203139453 G A MYBPH Silent p.T353T 0.29 TCGA-IR-A3LA-01 1 204985893 204985893 C T NFASC 3'UTR 0.36 TCGA-IR-A3LA-01 1 205052803 205052803 G A TMEM81 Missense_Mutation p.H216Y 0.29 tolerated(0.92) benign(0) TCGA-IR-A3LA-01 1 205890709 205890709 G C SLC26A9 Missense_Mutation p.I680M 0.38 deleterious(0) possibly_damaging(0.844) TCGA-IR-A3LA-01 1 20654436 20654436 C T VWA5B1 Silent p.I399I 0.42 TCGA-IR-A3LA-01 1 206769124 206769124 C T EIF2D Silent p.K484K 0.37 TCGA-IR-A3LA-01 1 210126072 210126072 G A SYT14 Missense_Mutation p.E16K 0.42 benign(0) TCGA-IR-A3LA-01 1 21083712 21083712 C G HP1BP3 Missense_Mutation p.E310Q 0.19 deleterious(0.02) benign(0.193) TCGA-IR-A3LA-01 1 21188780 21188780 C G EIF4G3 Missense_Mutation p.E968Q 0.59 deleterious(0.03) probably_damaging(0.999) TCGA-IR-A3LA-01 1 211918428 211918428 C T LPGAT1 3'UTR 0.51 TCGA-IR-A3LA-01 1 214531343 214531343 G A PTPN14 Silent p.F1162F 0.44 TCGA-IR-A3LA-01 1 215408848 215408848 C T KCNK2 3'UTR 0.46 TCGA-IR-A3LA-01 1 218458788 218458788 G C RRP15 Missense_Mutation p.D44H 0.44 deleterious(0) possibly_damaging(0.717) TCGA-IR-A3LA-01 1 22158142 22158142 C T HSPG2 Intron 0.33 TCGA-IR-A3LA-01 1 222794559 222794559 G A MIA3 Silent p.V64V 0.38 TCGA-IR-A3LA-01 1 223971928 223971928 C A TP53BP2 Missense_Mutation p.M1084I 0.42 deleterious(0.02) benign(0.181) TCGA-IR-A3LA-01 1 225592163 225592163 G A LBR Missense_Mutation p.R544C 0.44 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LA-01 1 225685061 225685061 C G ENAH 3'UTR 0.36 TCGA-IR-A3LA-01 1 226333222 226333222 C G ACBD3 3'UTR 0.52 TCGA-IR-A3LA-01 1 227171315 227171315 G C ADCK3 Missense_Mutation p.M381I 0.41 tolerated(0.08) benign(0.036) TCGA-IR-A3LA-01 1 228402796 228402796 C A OBSCN Missense_Mutation p.L609M 0.89 probably_damaging(0.999) TCGA-IR-A3LA-01 1 228559841 228559841 C T OBSCN Missense_Mutation p.S8078F 0.52 possibly_damaging(0.558) TCGA-IR-A3LA-01 1 228588854 228588854 G A TRIM11 Silent p.F182F 0.38 TCGA-IR-A3LA-01 1 228646248 228646248 C T HIST3H2BB 3'UTR 0.52 TCGA-IR-A3LA-01 1 231472834 231472834 G A EXOC8 Nonsense_Mutation p.Q220* 0.44 TCGA-IR-A3LA-01 1 231473335 231473335 C T EXOC8 Missense_Mutation p.E53K 0.38 deleterious(0.01) possibly_damaging(0.859) TCGA-IR-A3LA-01 1 231473506 231473506 C T EXOC8 5'UTR 0.28 TCGA-IR-A3LA-01 1 231664457 231664457 C T TSNAX 5'UTR 0.38 TCGA-IR-A3LA-01 1 233394164 233394164 G T PCNXL2 Missense_Mutation p.H482N 0.25 tolerated_low_confidence(0.31) benign(0.03) TCGA-IR-A3LA-01 1 233394695 233394695 G A PCNXL2 Nonsense_Mutation p.Q305* 0.50 TCGA-IR-A3LA-01 1 235423998 235423998 C T ARID4B Missense_Mutation p.E26K 0.39 deleterious(0) probably_damaging(0.991) TCGA-IR-A3LA-01 1 23670749 23670749 G C HNRNPR 5'UTR 0.44 TCGA-IR-A3LA-01 1 236750724 236750724 C TT HEATR1 Frame_Shift_Ins p.E565Kfs*13 0.37 TCGA-IR-A3LA-01 1 23686088 23686088 G A ZNF436 3'UTR 0.44 TCGA-IR-A3LA-01 1 237064535 237064535 C G MTR 3'UTR 0.64 TCGA-IR-A3LA-01 1 23847437 23847437 G A E2F2 Silent p.F235F 0.43 TCGA-IR-A3LA-01 1 23908023 23908023 C G MDS2 RNA 0.42 TCGA-IR-A3LA-01 1 241756822 241756822 C G OPN3 3'UTR 0.40 TCGA-IR-A3LA-01 1 24384003 24384003 C T MYOM3 Missense_Mutation p.E1389K 0.51 tolerated(0.29) benign(0.309) TCGA-IR-A3LA-01 1 244852595 244852595 G A DESI2 Missense_Mutation p.E54K 0.33 deleterious(0.01) probably_damaging(0.975) TCGA-IR-A3LA-01 1 244869133 244869133 G A DESI2 3'UTR 0.24 TCGA-IR-A3LA-01 1 24666196 24666196 G C GRHL3 Missense_Mutation p.E331Q 0.45 deleterious(0) probably_damaging(0.977) TCGA-IR-A3LA-01 1 248128661 248128661 G C OR2AK2 Missense_Mutation p.D10H 0.43 tolerated_low_confidence(0.2) benign(0.026) TCGA-IR-A3LA-01 1 24840943 24840943 G A RCAN3 Missense_Mutation p.M27I 0.37 deleterious(0.05) probably_damaging(0.968) TCGA-IR-A3LA-01 1 248437015 248437015 C G OR2T33 Missense_Mutation p.L34F 0.43 tolerated(0.5) benign(0.001) TCGA-IR-A3LA-01 1 26227120 26227120 G A STMN1 Intron 0.30 TCGA-IR-A3LA-01 1 26900797 26900797 G A RPS6KA1 3'Flank 0.41 TCGA-IR-A3LA-01 1 27094341 27094341 G A ARID1A Missense_Mutation p.E1017K 0.45 unknown(0) TCGA-IR-A3LA-01 1 31821808 31821808 G C ZCCHC17 Missense_Mutation p.R184T 0.39 deleterious_low_confidence(0) benign(0.04) TCGA-IR-A3LA-01 1 32678163 32678163 C T DCDC2B Silent p.V200V 0.40 TCGA-IR-A3LA-01 1 32688081 32688081 C T EIF3I Intron 0.37 TCGA-IR-A3LA-01 1 33237475 33237475 C G KIAA1522 Missense_Mutation p.P899A 0.55 tolerated(0.3) benign(0.259) TCGA-IR-A3LA-01 1 33237623 33237623 C G KIAA1522 Nonsense_Mutation p.S948* 0.33 TCGA-IR-A3LA-01 1 33330060 33330060 C A FNDC5 Intron 0.62 TCGA-IR-A3LA-01 1 33478727 33478727 C G AK2 3'UTR 0.52 TCGA-IR-A3LA-01 1 3638720 3638720 G A TP73 Missense_Mutation p.D189N 0.38 deleterious(0) benign(0.186) TCGA-IR-A3LA-01 1 3670736 3670736 C T CCDC27 Nonsense_Mutation p.R125* 0.40 TCGA-IR-A3LA-01 1 36932371 36932371 C G CSF3R Missense_Mutation p.E727Q 0.47 deleterious(0.04) possibly_damaging(0.743) TCGA-IR-A3LA-01 1 39853530 39853530 G T MACF1 Nonsense_Mutation p.E2944* 0.40 TCGA-IR-A3LA-01 1 39878915 39878915 G C KIAA0754 Missense_Mutation p.R857T 0.46 benign(0.055) TCGA-IR-A3LA-01 1 40758374 40758374 G C ZMPSTE24 3'UTR 0.54 TCGA-IR-A3LA-01 1 43111938 43111938 G T CCDC30 Missense_Mutation p.D675Y 0.58 deleterious(0.02) benign(0.26) TCGA-IR-A3LA-01 1 44443409 44443409 G C ATP6V0B Intron 0.57 TCGA-IR-A3LA-01 1 45253357 45253357 G A BEST4 Silent p.L7L 0.50 TCGA-IR-A3LA-01 1 46512224 46512224 C T PIK3R3 Missense_Mutation p.E339K 0.31 tolerated(0.12) benign(0.027) TCGA-IR-A3LA-01 1 46651343 46651343 G C TSPAN1 3'UTR 0.39 TCGA-IR-A3LA-01 1 46745946 46745946 C G LRRC41 Silent p.L646L 0.44 TCGA-IR-A3LA-01 1 47753326 47753326 C A STIL Nonsense_Mutation p.E344* 0.51 TCGA-IR-A3LA-01 1 52179728 52179728 C G OSBPL9 Missense_Mutation p.L99V 0.46 tolerated(0.21) benign(0.075) TCGA-IR-A3LA-01 1 54417789 54417789 G A LRRC42 Silent p.Q39Q 0.37 TCGA-IR-A3LA-01 1 56961183 56961183 C T PPAP2B 3'UTR 0.39 TCGA-IR-A3LA-01 1 6169958 6169958 G C CHD5 Silent p.L1825L 0.39 TCGA-IR-A3LA-01 1 6694728 6694728 C T DNAJC11 3'UTR 0.49 TCGA-IR-A3LA-01 1 67423802 67423802 C T MIER1 Silent p.L134L 0.41 TCGA-IR-A3LA-01 1 68896970 68896970 C G RPE65 Missense_Mutation p.D445H 0.67 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 1 71512886 71512886 C T PTGER3 Silent p.P125P 0.47 TCGA-IR-A3LA-01 1 71530062 71530062 C G ZRANB2 3'UTR 0.50 TCGA-IR-A3LA-01 1 75699774 75699774 C G SLC44A5 Silent p.T250T 0.26 TCGA-IR-A3LA-01 1 76226834 76226834 G T ACADM Nonsense_Mutation p.E329* 0.48 TCGA-IR-A3LA-01 1 76226875 76226875 G T ACADM Missense_Mutation p.Q342H 0.46 tolerated(0.54) benign(0.025) TCGA-IR-A3LA-01 1 76226877 76226877 G A ACADM Missense_Mutation p.R343K 0.46 tolerated(0.92) benign(0.055) TCGA-IR-A3LA-01 1 76226983 76226983 G A ACADM Silent p.Q378Q 0.46 TCGA-IR-A3LA-01 1 76282183 76282183 C T MSH4 Missense_Mutation p.S314L 0.41 tolerated(0.23) benign(0.241) TCGA-IR-A3LA-01 1 76877784 76877784 C T ST6GALNAC3 Missense_Mutation p.S102F 0.35 possibly_damaging(0.83) TCGA-IR-A3LA-01 1 7724494 7724494 G C CAMTA1 Missense_Mutation p.Q629H 0.47 tolerated_low_confidence(0.2) possibly_damaging(0.73) TCGA-IR-A3LA-01 1 7724548 7724548 G A CAMTA1 Silent p.V647V 0.37 TCGA-IR-A3LA-01 1 78024354 78024354 G A AK5 Silent p.%3D 0.38 TCGA-IR-A3LA-01 1 7828595 7828595 G C CAMTA1 3'UTR 0.40 TCGA-IR-A3LA-01 1 7863191 7863191 G C PER3 Silent p.L318L 0.43 TCGA-IR-A3LA-01 1 79106759 79106759 C T IFI44L Nonsense_Mutation p.Q368* 0.16 TCGA-IR-A3LA-01 1 84369759 84369759 C G TTLL7 Intron 0.37 TCGA-IR-A3LA-01 1 85115458 85115458 G A SSX2IP Intron 0.33 TCGA-IR-A3LA-01 1 86361540 86361540 C A COL24A1 Splice_Site p.X974_splice 0.55 TCGA-IR-A3LA-01 1 87380628 87380628 C G HS2ST1 5'UTR 0.32 TCGA-IR-A3LA-01 1 89448377 89448377 C T RBMXL1 Missense_Mutation p.G378E 0.41 tolerated(0.27) unknown(0) TCGA-IR-A3LA-01 1 89582672 89582672 C T GBP2 Intron 0.46 TCGA-IR-A3LA-01 1 92148822 92148822 C G TGFBR3 3'UTR 0.18 TCGA-IR-A3LA-01 1 93309606 93309606 C T FAM69A Silent p.V207V 0.57 TCGA-IR-A3LA-01 1 94508319 94508319 G C ABCA4 Nonsense_Mutation p.S1109* 0.40 TCGA-IR-A3LA-01 1 94568588 94568588 G A ABCA4 Nonsense_Mutation p.Q185* 0.40 TCGA-IR-A3LA-01 1 97187332 97187332 C T PTBP2 5'Flank 0.47 TCGA-IR-A3LA-01 1 9784411 9784411 C T PIK3CD Silent p.F932F 0.48 TCGA-IR-A3LA-01 1 981451 981451 G A AGRN Missense_Mutation p.E930K 0.49 tolerated(0.1) possibly_damaging(0.621) TCGA-IR-A3LA-01 1 99357849 99357849 C T LPPR5 3'UTR 0.41 TCGA-IR-A3LA-01 20 2097345 2097345 G A STK35 Missense_Mutation p.C309Y 0.49 tolerated(0.3) benign(0.055) TCGA-IR-A3LA-01 20 21376359 21376359 C T NKX2-4 3'UTR 0.53 TCGA-IR-A3LA-01 20 23066725 23066725 G - CD93 Frame_Shift_Del p.C36Afs*9 0.26 TCGA-IR-A3LA-01 20 25657765 25657765 C G ZNF337 Intron 0.33 TCGA-IR-A3LA-01 20 2644840 2644840 C T IDH3B 5'UTR 0.54 TCGA-IR-A3LA-01 20 2777944 2777944 G T CPXM1 Silent p.L242L 0.47 TCGA-IR-A3LA-01 20 30195015 30195015 G A ID1 3'Flank 0.47 TCGA-IR-A3LA-01 20 31062436 31062436 C T C20orf112 Missense_Mutation p.R26Q 0.11 tolerated(0.43) benign(0.026) TCGA-IR-A3LA-01 20 31115566 31115566 G C C20orf112 Missense_Mutation p.R64G 0.34 deleterious(0) benign(0.327) TCGA-IR-A3LA-01 20 3145021 3145021 G T LZTS3 3'UTR 0.42 TCGA-IR-A3LA-01 20 3233280 3233280 C G C20orf194 Missense_Mutation p.E1158Q 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LA-01 20 33515093 33515093 G A ACSS2 3'UTR 0.22 TCGA-IR-A3LA-01 20 35288785 35288785 G A NDRG3 Silent p.V271V 0.29 TCGA-IR-A3LA-01 20 35390934 35390934 C T DSN1 Missense_Mutation p.E174K 0.25 tolerated(0.09) probably_damaging(1) TCGA-IR-A3LA-01 20 36640910 36640910 C G TTI1 Missense_Mutation p.E437Q 0.41 deleterious(0) probably_damaging(0.984) TCGA-IR-A3LA-01 20 37549084 37549084 G A PPP1R16B 3'UTR 0.50 TCGA-IR-A3LA-01 20 37580927 37580927 C T FAM83D Missense_Mutation p.P538S 0.43 tolerated(0.4) benign(0.015) TCGA-IR-A3LA-01 20 40111954 40111954 C T CHD6 Silent p.Q821Q 0.50 TCGA-IR-A3LA-01 20 40111956 40111956 G T CHD6 Missense_Mutation p.Q821K 0.50 deleterious(0.01) benign(0.358) TCGA-IR-A3LA-01 20 4163254 4163254 C T SMOX Silent p.F376F 0.40 TCGA-IR-A3LA-01 20 42635383 42635383 C T TOX2 Missense_Mutation p.S121F 0.36 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LA-01 20 44671866 44671866 G A SLC12A5 Missense_Mutation p.D404N 0.57 tolerated(0.09) benign(0.096) TCGA-IR-A3LA-01 20 45947722 45947722 G A AL031666.2 Missense_Mutation p.E120K 0.66 unknown(0) TCGA-IR-A3LA-01 20 48252848 48252848 C T B4GALT5 3'UTR 0.72 TCGA-IR-A3LA-01 20 55204406 55204406 C G TFAP2C 5'UTR 0.16 TCGA-IR-A3LA-01 20 57564672 57564672 G C NELFCD Missense_Mutation p.E230Q 0.26 tolerated(0.62) benign(0.062) TCGA-IR-A3LA-01 20 61467602 61467602 C T COL9A3 Nonsense_Mutation p.Q489* 0.65 TCGA-IR-A3LA-01 20 61526236 61526236 C T DIDO1 Missense_Mutation p.E788K 0.22 possibly_damaging(0.601) TCGA-IR-A3LA-01 20 62197125 62197125 G A HELZ2 Missense_Mutation p.A1017V 0.19 tolerated_low_confidence(0.44) benign(0.001) TCGA-IR-A3LA-01 20 62199862 62199862 C T HELZ2 Missense_Mutation p.A527T 0.58 tolerated(0.69) possibly_damaging(0.821) TCGA-IR-A3LA-01 20 62699457 62699457 C G TCEA2 Missense_Mutation p.S100W 0.66 deleterious(0) probably_damaging(0.937) TCGA-IR-A3LA-01 20 62891509 62891509 C G PCMTD2 Nonsense_Mutation p.S64* 0.69 TCGA-IR-A3LA-01 20 741808 741808 G C SLC52A3 Silent p.L424L 0.50 TCGA-IR-A3LA-01 20 8665705 8665705 C T PLCB1 Missense_Mutation p.S330L 0.47 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 21 22906976 22906976 G C NCAM2 Missense_Mutation p.E801Q 0.35 deleterious(0) benign(0.325) TCGA-IR-A3LA-01 21 30255320 30255320 G A N6AMT1 Nonsense_Mutation p.Q70* 0.31 TCGA-IR-A3LA-01 21 30434718 30434718 C G CCT8 Missense_Mutation p.E343Q 0.39 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LA-01 21 30969953 30969953 G C GRIK1-AS2 3'UTR 0.43 TCGA-IR-A3LA-01 21 33065777 33065777 G C SCAF4 Missense_Mutation p.S448C 0.52 possibly_damaging(0.7) TCGA-IR-A3LA-01 21 33372611 33372611 G C HUNK 3'UTR 0.52 TCGA-IR-A3LA-01 21 35093530 35093530 G A ITSN1 Missense_Mutation p.D26N 0.38 deleterious(0.01) unknown(0) TCGA-IR-A3LA-01 21 37728969 37728969 G C MORC3 Missense_Mutation p.M385I 0.37 tolerated(0.46) benign(0.109) TCGA-IR-A3LA-01 21 38117369 38117369 C A SIM2 Missense_Mutation p.S503Y 0.29 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-IR-A3LA-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.33 deleterious(0) possibly_damaging(0.835) TCGA-IR-A3LA-01 21 45977948 45977948 C T KRTAP10-3 Silent p.Q217Q 0.40 TCGA-IR-A3LA-01 21 46012207 46012207 C G KRTAP10-6 Silent p.L53L 0.53 TCGA-IR-A3LA-01 21 46066404 46066404 C G KRTAP10-11 Missense_Mutation p.S10C 0.57 deleterious(0) unknown(0) TCGA-IR-A3LA-01 21 47635106 47635106 G C LSS Missense_Mutation p.I333M 0.29 tolerated(0.17) possibly_damaging(0.771) TCGA-IR-A3LA-01 21 47987458 47987458 G A DIP2A Missense_Mutation p.E1547K 0.48 deleterious(0) possibly_damaging(0.899) TCGA-IR-A3LA-01 22 19230407 19230407 G C CLTCL1 Nonsense_Mutation p.S191* 0.33 TCGA-IR-A3LA-01 22 19452740 19452740 G C UFD1L Missense_Mutation p.I160M 0.52 deleterious(0) probably_damaging(0.987) TCGA-IR-A3LA-01 22 19512680 19512680 C G CLDN5 Intron 0.50 TCGA-IR-A3LA-01 22 20040099 20040099 G A TANGO2 Missense_Mutation p.R86Q 0.49 tolerated(0.52) benign(0.008) TCGA-IR-A3LA-01 22 20343203 20343203 C T XXbac-B33L19.6 5'Flank 0.11 TCGA-IR-A3LA-01 22 22314109 22314109 C G TOP3B Splice_Site p.X552_splice 0.54 TCGA-IR-A3LA-01 22 24034023 24034023 G C RGL4 5'UTR 0.50 TCGA-IR-A3LA-01 22 24034903 24034903 G C RGL4 Missense_Mutation p.E141Q 0.49 deleterious(0.05) possibly_damaging(0.706) TCGA-IR-A3LA-01 22 24236632 24236632 C G AP000350.4 3'UTR 0.45 TCGA-IR-A3LA-01 22 26849170 26849170 C T HPS4 3'UTR 0.41 TCGA-IR-A3LA-01 22 28146820 28146820 G C MN1 3'UTR 0.70 TCGA-IR-A3LA-01 22 28146942 28146942 G C MN1 Missense_Mutation p.I1308M 0.50 benign(0.11) TCGA-IR-A3LA-01 22 29169750 29169750 G C CCDC117 Missense_Mutation p.E75Q 0.80 tolerated(0.19) possibly_damaging(0.607) TCGA-IR-A3LA-01 22 30394787 30394787 G A MTMR3 Silent p.E166E 0.85 TCGA-IR-A3LA-01 22 30885864 30885864 C G SEC14L4 3'UTR 0.21 TCGA-IR-A3LA-01 22 31743104 31743104 C T AC005003.1 5'UTR 0.79 TCGA-IR-A3LA-01 22 32111360 32111360 G C PRR14L Missense_Mutation p.T822R 0.82 tolerated(0.25) possibly_damaging(0.839) TCGA-IR-A3LA-01 22 32111816 32111816 G C PRR14L Missense_Mutation p.S670C 0.85 tolerated(0.07) benign(0.001) TCGA-IR-A3LA-01 22 32111844 32111844 G C PRR14L Missense_Mutation p.Q661E 0.80 tolerated(0.18) benign(0.124) TCGA-IR-A3LA-01 22 33733679 33733679 G A LARGE Missense_Mutation p.R414W 0.77 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LA-01 22 36139903 36139903 C T RBFOX2 3'Flank 0.63 TCGA-IR-A3LA-01 22 37419821 37419821 A G MPST Intron 0.06 TCGA-IR-A3LA-01 22 37622806 37622806 C G RAC2 Missense_Mutation p.Q162H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.898) TCGA-IR-A3LA-01 22 37769910 37769910 G C ELFN2 Silent p.L555L 0.14 TCGA-IR-A3LA-01 22 37771487 37771487 C T ELFN2 Missense_Mutation p.D30N 0.17 deleterious(0) probably_damaging(0.915) TCGA-IR-A3LA-01 22 38046671 38046671 C A SH3BP1 Missense_Mutation p.P513T 0.17 tolerated(0.18) benign(0.165) TCGA-IR-A3LA-01 22 38211283 38211283 G C GCAT Missense_Mutation p.G269R 0.13 deleterious(0.02) probably_damaging(0.94) TCGA-IR-A3LA-01 22 38227784 38227784 G C ANKRD54 3'UTR 0.29 TCGA-IR-A3LA-01 22 38228006 38228006 G C ANKRD54 Missense_Mutation p.L283V 0.32 deleterious(0) possibly_damaging(0.656) TCGA-IR-A3LA-01 22 38877561 38877561 C G KDELR3 3'UTR 0.30 TCGA-IR-A3LA-01 22 39885727 39885727 C G MGAT3 3'UTR 0.32 TCGA-IR-A3LA-01 22 40059831 40059831 C G CACNA1I Missense_Mutation p.I1194M 0.65 deleterious(0.02) possibly_damaging(0.453) TCGA-IR-A3LA-01 22 42385672 42385672 C G SEPT3 Missense_Mutation p.S218C 0.76 deleterious(0.04) benign(0.003) TCGA-IR-A3LA-01 22 42475279 42475279 G C FAM109B 3'UTR 0.43 TCGA-IR-A3LA-01 22 42896607 42896607 G C SERHL RNA 0.19 TCGA-IR-A3LA-01 22 44225002 44225002 G A SULT4A1 Missense_Mutation p.T227M 0.59 deleterious(0.01) benign(0.376) TCGA-IR-A3LA-01 22 44547423 44547423 G A PARVB Missense_Mutation p.E312K 0.62 deleterious(0.04) probably_damaging(0.97) TCGA-IR-A3LA-01 22 46067873 46067873 C T ATXN10 5'UTR 0.54 TCGA-IR-A3LA-01 22 46319212 46319212 G C WNT7B Missense_Mutation p.L192V 0.59 tolerated(0.77) benign(0.361) TCGA-IR-A3LA-01 22 46638203 46638203 C T PPARA 3'UTR 0.64 TCGA-IR-A3LA-01 22 47073600 47073600 G A GRAMD4 3'UTR 0.62 TCGA-IR-A3LA-01 22 50279300 50279300 G A ZBED4 Missense_Mutation p.E664K 0.93 deleterious(0) probably_damaging(0.979) TCGA-IR-A3LA-01 22 50618245 50618245 C A PANX2 3'UTR 1.00 TCGA-IR-A3LA-01 2 102000165 102000165 C G CREG2 Splice_Site p.X148_splice 0.45 TCGA-IR-A3LA-01 2 106710565 106710565 C T UXS1 Missense_Mutation p.E399K 0.46 tolerated(0.13) probably_damaging(0.974) TCGA-IR-A3LA-01 2 113191004 113191004 C T RGPD8 Silent p.E9E 0.38 TCGA-IR-A3LA-01 2 113306970 113306970 C G POLR1B Missense_Mutation p.Q207E 0.42 tolerated(0.9) benign(0.001) TCGA-IR-A3LA-01 2 113421361 113421361 C G SLC20A1 3'UTR 0.35 TCGA-IR-A3LA-01 2 114258584 114258584 G A FOXD4L1 3'UTR 0.10 TCGA-IR-A3LA-01 2 114369640 114369640 C G RPL23AP7 RNA 0.77 TCGA-IR-A3LA-01 2 11718523 11718523 G A GREB1 Silent p.T246T 0.35 TCGA-IR-A3LA-01 2 128064902 128064902 G A MAP3K2 3'UTR 0.34 TCGA-IR-A3LA-01 2 128917157 128917157 C G UGGT1 Missense_Mutation p.Q809E 0.47 tolerated(1) benign(0.007) TCGA-IR-A3LA-01 2 130740059 130740059 C T RAB6C 3'UTR 0.44 TCGA-IR-A3LA-01 2 131521047 131521047 G A AMER3 Missense_Mutation p.E468K 0.44 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 2 131522443 131522443 G A AMER3 3'UTR 0.25 TCGA-IR-A3LA-01 2 131522760 131522760 G C AMER3 3'UTR 0.44 TCGA-IR-A3LA-01 2 131671774 131671774 G A ARHGEF4 5'Flank 0.55 TCGA-IR-A3LA-01 2 132235876 132235876 C G TUBA3D Missense_Mutation p.S48C 0.44 deleterious_low_confidence(0.04) possibly_damaging(0.893) TCGA-IR-A3LA-01 2 132287646 132287646 G A CCDC74A Intron 0.55 TCGA-IR-A3LA-01 2 132905499 132905499 G A ANKRD30BL 3'UTR 0.50 TCGA-IR-A3LA-01 2 135206278 135206278 G A MGAT5 Missense_Mutation p.D696N 0.34 tolerated(0.43) benign(0.005) TCGA-IR-A3LA-01 2 135738993 135738993 C G MAP3K19 Silent p.R1106R 0.47 TCGA-IR-A3LA-01 2 135744028 135744028 G C MAP3K19 Nonsense_Mutation p.S805* 0.42 TCGA-IR-A3LA-01 2 139428861 139428861 G A NXPH2 Silent p.F142F 0.43 TCGA-IR-A3LA-01 2 149226147 149226147 C G MBD5 Missense_Mutation p.S212C 0.53 deleterious(0) possibly_damaging(0.843) TCGA-IR-A3LA-01 2 150327251 150327251 G A LYPD6 Missense_Mutation p.E135K 0.47 tolerated(0.51) benign(0.15) TCGA-IR-A3LA-01 2 15769813 15769813 G A DDX1 Missense_Mutation p.E655K 0.70 deleterious(0) probably_damaging(0.926) TCGA-IR-A3LA-01 2 158272376 158272376 G A CYTIP Missense_Mutation p.S298F 0.39 deleterious(0.01) benign(0.153) TCGA-IR-A3LA-01 2 158980369 158980369 C T UPP2 Missense_Mutation p.T315I 0.45 tolerated(0.06) probably_damaging(0.999) TCGA-IR-A3LA-01 2 160139519 160139519 G C WDSUB1 Missense_Mutation p.S21C 0.45 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 2 160181437 160181437 C A BAZ2B Nonsense_Mutation p.E2080* 0.32 TCGA-IR-A3LA-01 2 162999790 162999790 C T GCG 3'UTR 0.48 TCGA-IR-A3LA-01 2 163217169 163217169 T A GCA 3'UTR 0.37 TCGA-IR-A3LA-01 2 167055593 167055593 C T SCN9A Silent p.E1841E 0.47 TCGA-IR-A3LA-01 2 169952147 169952147 C G DHRS9 Missense_Mutation p.P277R 0.44 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 2 169995136 169995136 C G LRP2 Missense_Mutation p.G4490A 0.34 possibly_damaging(0.76) TCGA-IR-A3LA-01 2 170011056 170011056 G C LRP2 Nonsense_Mutation p.S4070* 0.38 TCGA-IR-A3LA-01 2 170557671 170557671 G C PHOSPHO2 Missense_Mutation p.E64Q 0.27 tolerated(0.06) benign(0.338) TCGA-IR-A3LA-01 2 170557827 170557827 G C PHOSPHO2 Missense_Mutation p.D116H 0.25 tolerated(0.26) benign(0.011) TCGA-IR-A3LA-01 2 171649424 171649424 C T ERICH2 Nonsense_Mutation p.Q90* 0.50 TCGA-IR-A3LA-01 2 172648021 172648021 G C SLC25A12 Missense_Mutation p.L509V 0.39 tolerated(0.14) benign(0.062) TCGA-IR-A3LA-01 2 179399950 179399950 C T TTN Missense_Mutation p.E33798K 0.39 TCGA-IR-A3LA-01 2 179406306 179406306 G A TTN Missense_Mutation p.P32500S 0.29 TCGA-IR-A3LA-01 2 179407455 179407455 C G TTN Missense_Mutation p.E32376Q 0.47 TCGA-IR-A3LA-01 2 179426276 179426276 C T TTN Missense_Mutation p.E28195K 0.38 TCGA-IR-A3LA-01 2 179436389 179436389 C T TTN Missense_Mutation p.D24824N 0.38 TCGA-IR-A3LA-01 2 179467112 179467112 C G TTN Silent p.L18339L 0.48 TCGA-IR-A3LA-01 2 179499121 179499121 C G TTN Missense_Mutation p.K14129N 0.56 TCGA-IR-A3LA-01 2 179545833 179545833 C G TTN Missense_Mutation p.E11105Q 0.48 TCGA-IR-A3LA-01 2 17962965 17962965 C T GEN1 Missense_Mutation p.S829L 0.68 tolerated(0.6) benign(0.001) TCGA-IR-A3LA-01 2 179714787 179714787 C G CCDC141 Missense_Mutation p.E1116Q 0.41 tolerated(0.06) benign(0.359) TCGA-IR-A3LA-01 2 179974033 179974033 G C SESTD1 3'UTR 0.47 TCGA-IR-A3LA-01 2 182786865 182786865 C T SSFA2 Missense_Mutation p.S1134L 0.30 tolerated(0.48) benign(0.018) TCGA-IR-A3LA-01 2 187534493 187534493 C T ITGAV Silent p.L886L 0.41 TCGA-IR-A3LA-01 2 188225471 188225471 C A CALCRL Missense_Mutation p.C212F 0.27 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 2 190531167 190531167 G A ASNSD1 Silent p.K103K 0.35 TCGA-IR-A3LA-01 2 190618675 190618675 C G OSGEPL1 Missense_Mutation p.Q310H 0.40 tolerated(0.1) possibly_damaging(0.497) TCGA-IR-A3LA-01 2 191929649 191929649 C T STAT4 Silent p.E222E 0.43 TCGA-IR-A3LA-01 2 197596820 197596820 G C CCDC150 Missense_Mutation p.E1045Q 0.58 deleterious(0) possibly_damaging(0.539) TCGA-IR-A3LA-01 2 198570947 198570947 C T MARS2 Missense_Mutation p.S273L 0.38 deleterious(0) possibly_damaging(0.503) TCGA-IR-A3LA-01 2 200213501 200213501 G A SATB2 Nonsense_Mutation p.Q366* 0.45 TCGA-IR-A3LA-01 2 200298085 200298085 G C SATB2 Missense_Mutation p.H108D 0.46 deleterious(0) possibly_damaging(0.805) TCGA-IR-A3LA-01 2 201436969 201436969 G C SGOL2 Missense_Mutation p.D634H 0.32 deleterious(0.05) benign(0.029) TCGA-IR-A3LA-01 2 201722520 201722520 G A CLK1 Silent p.F293F 0.38 TCGA-IR-A3LA-01 2 201785717 201785717 G T ORC2 Silent p.L431L 0.38 TCGA-IR-A3LA-01 2 202410322 202410322 G C ALS2CR11 Missense_Mutation p.S369C 0.38 tolerated(0.18) possibly_damaging(0.465) TCGA-IR-A3LA-01 2 203431989 203431989 G C BMPR2 3'UTR 0.33 TCGA-IR-A3LA-01 2 203972541 203972541 G C NBEAL1 Missense_Mutation p.D498H 0.40 tolerated(0.08) benign(0.001) TCGA-IR-A3LA-01 2 20450016 20450016 G C PUM2 3'UTR 0.58 TCGA-IR-A3LA-01 2 2057784 2057784 G A MYT1L 5'UTR 0.24 TCGA-IR-A3LA-01 2 206980726 206980726 C T AC007383.4 RNA 0.41 TCGA-IR-A3LA-01 2 208693146 208693146 C T PLEKHM3 Missense_Mutation p.R728Q 0.63 deleterious(0) possibly_damaging(0.757) TCGA-IR-A3LA-01 2 210752960 210752960 G C UNC80 Missense_Mutation p.D1420H 0.43 benign(0.344) TCGA-IR-A3LA-01 2 211527917 211527917 G C CPS1 Missense_Mutation p.G1339A 0.48 deleterious(0) possibly_damaging(0.795) TCGA-IR-A3LA-01 2 21249674 21249674 C T APOB Missense_Mutation p.D744N 0.52 possibly_damaging(0.795) TCGA-IR-A3LA-01 2 219513523 219513523 C T ZNF142 Missense_Mutation p.E370K 0.37 deleterious(0.03) benign(0.292) TCGA-IR-A3LA-01 2 219515149 219515149 C G ZNF142 Missense_Mutation p.E127D 0.39 tolerated(0.53) benign(0.217) TCGA-IR-A3LA-01 2 219553557 219553557 G A STK36 Silent p.L506L 0.55 TCGA-IR-A3LA-01 2 219825154 219825154 G C CDK5R2 Silent p.L204L 0.40 TCGA-IR-A3LA-01 2 219900337 219900337 C T CCDC108 Missense_Mutation p.R136K 0.34 tolerated(1) benign(0.005) TCGA-IR-A3LA-01 2 220073905 220073905 G A ZFAND2B Intron 0.62 TCGA-IR-A3LA-01 2 220329158 220329158 G A SPEG Silent p.L903L 0.42 TCGA-IR-A3LA-01 2 220419452 220419452 C T OBSL1 Silent p.L1540L 0.34 TCGA-IR-A3LA-01 2 220502342 220502342 G T SLC4A3 Nonsense_Mutation p.E886* 0.55 TCGA-IR-A3LA-01 2 220502408 220502408 G T SLC4A3 Nonsense_Mutation p.E908* 0.57 TCGA-IR-A3LA-01 2 224463793 224463793 G T SCG2 Missense_Mutation p.H70N 0.42 tolerated(1) benign(0.004) TCGA-IR-A3LA-01 2 228012244 228012244 C G COL4A4 5'UTR 0.45 TCGA-IR-A3LA-01 2 228159698 228159698 G C COL4A3 Missense_Mutation p.G1146A 0.29 unknown(0) TCGA-IR-A3LA-01 2 231311611 231311611 G C SP100 Missense_Mutation p.E173Q 0.30 deleterious(0.02) possibly_damaging(0.607) TCGA-IR-A3LA-01 2 233114048 233114048 G A DIS3L2 Missense_Mutation p.E473K 0.41 tolerated(0.14) benign(0.031) TCGA-IR-A3LA-01 2 234905093 234905093 C G TRPM8 Missense_Mutation p.F1021L 0.38 tolerated(1) benign(0.03) TCGA-IR-A3LA-01 2 238475280 238475280 G A PRLH Missense_Mutation p.A22T 0.35 tolerated(0.74) unknown(0) TCGA-IR-A3LA-01 2 239152847 239152847 G C PER2 3'UTR 0.25 TCGA-IR-A3LA-01 2 241992704 241992704 C A SNED1 Missense_Mutation p.Q740K 0.31 tolerated(0.37) benign(0.071) TCGA-IR-A3LA-01 2 24930054 24930054 G C NCOA1 Missense_Mutation p.R572T 0.76 tolerated(0.3) possibly_damaging(0.661) TCGA-IR-A3LA-01 2 25655804 25655804 C G DTNB Missense_Mutation p.E470Q 0.49 tolerated(0.14) benign(0.122) TCGA-IR-A3LA-01 2 26702252 26702252 C A OTOF Missense_Mutation p.R698S 0.30 tolerated(0.07) benign(0.119) TCGA-IR-A3LA-01 2 26804096 26804096 C G CIB4 3'UTR 0.24 TCGA-IR-A3LA-01 2 27457541 27457541 C T CAD Silent p.V1258V 0.44 TCGA-IR-A3LA-01 2 27560101 27560101 C A GTF3C2 Intron 0.10 TCGA-IR-A3LA-01 2 27566306 27566306 G C GTF3C2 Missense_Mutation p.S39C 0.55 tolerated_low_confidence(0.08) benign(0.001) TCGA-IR-A3LA-01 2 28117528 28117528 G C BRE Missense_Mutation p.L35F 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-IR-A3LA-01 2 29022429 29022429 C G PPP1CB 3'UTR 0.40 TCGA-IR-A3LA-01 2 29287839 29287839 C G C2orf71 Missense_Mutation p.E1255Q 0.20 deleterious(0.01) probably_damaging(0.952) TCGA-IR-A3LA-01 2 30955386 30955386 C T CAPN13 Silent p.V615V 0.49 TCGA-IR-A3LA-01 2 31489256 31489256 G A EHD3 Missense_Mutation p.E432K 0.15 tolerated(0.45) benign(0.016) TCGA-IR-A3LA-01 2 32582209 32582209 C G BIRC6 5'UTR 0.63 TCGA-IR-A3LA-01 2 37428867 37428867 G C CEBPZ-AS1 Nonstop_Mutation p.*81Yext*45 0.70 TCGA-IR-A3LA-01 2 37458672 37458672 C T CEBPZ Silent p.K13K 0.61 TCGA-IR-A3LA-01 2 42275817 42275817 G A PKDCC Missense_Mutation p.G160S 0.48 tolerated(0.47) possibly_damaging(0.577) TCGA-IR-A3LA-01 2 43452399 43452399 C T ZFP36L2 Missense_Mutation p.E182K 0.36 deleterious(0) possibly_damaging(0.905) TCGA-IR-A3LA-01 2 43768398 43768398 C T THADA Missense_Mutation p.R1055K 0.55 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 2 44019873 44019873 C T DYNC2LI1 Intron 0.45 TCGA-IR-A3LA-01 2 44040185 44040185 C T ABCG5 3'UTR 0.31 TCGA-IR-A3LA-01 2 44104794 44104794 C T ABCG8 Silent p.L617L 0.44 TCGA-IR-A3LA-01 2 44105110 44105110 C G ABCG8 3'UTR 0.49 TCGA-IR-A3LA-01 2 54080207 54080207 G A GPR75 3'UTR 0.24 TCGA-IR-A3LA-01 2 54127099 54127099 G C PSME4 Missense_Mutation p.S1114C 0.46 tolerated(0.08) benign(0.002) TCGA-IR-A3LA-01 2 55119690 55119690 C T EML6 Missense_Mutation p.S880L 0.50 deleterious(0) possibly_damaging(0.87) TCGA-IR-A3LA-01 2 55254364 55254364 C T RTN4 Missense_Mutation p.E291K 0.51 tolerated(0.1) benign(0.276) TCGA-IR-A3LA-01 2 5834377 5834377 G T SOX11 3'UTR 0.53 TCGA-IR-A3LA-01 2 5834380 5834380 G A SOX11 3'UTR 0.51 TCGA-IR-A3LA-01 2 61520659 61520659 C G USP34 Missense_Mutation p.Q1496H 0.39 tolerated(0.61) benign(0.001) TCGA-IR-A3LA-01 2 65473825 65473825 C T ACTR2 Silent p.L114L 0.44 TCGA-IR-A3LA-01 2 68269518 68269518 C G C1D 3'UTR 0.50 TCGA-IR-A3LA-01 2 69702287 69702287 G A AAK1 3'UTR 0.34 TCGA-IR-A3LA-01 2 71036141 71036141 G A CLEC4F 3'UTR 0.46 TCGA-IR-A3LA-01 2 73430134 73430134 C T NOTO Missense_Mutation p.R114C 0.50 tolerated(0.13) benign(0.003) TCGA-IR-A3LA-01 2 74129532 74129532 G A ACTG2 Missense_Mutation p.E58K 0.42 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-IR-A3LA-01 2 74642323 74642323 G C C2orf81 Missense_Mutation p.I300M 0.50 tolerated(0.33) benign(0.021) TCGA-IR-A3LA-01 2 74732735 74732735 C T PCGF1 Missense_Mutation p.E199K 0.32 tolerated(0.19) benign(0.038) TCGA-IR-A3LA-01 2 86067090 86067090 C G ST3GAL5 3'UTR 0.43 TCGA-IR-A3LA-01 2 87016516 87016516 G A CD8A Silent p.I185I 0.50 TCGA-IR-A3LA-01 2 88484895 88484895 C G THNSL2 Missense_Mutation p.Q376E 0.35 tolerated(0.57) benign(0.008) TCGA-IR-A3LA-01 2 8867042 8867042 G A KIDINS220 3'Flank 0.43 TCGA-IR-A3LA-01 2 89339892 89339892 C A IGKV1-12 Missense_Mutation p.Q60H 0.46 deleterious(0.03) possibly_damaging(0.451) TCGA-IR-A3LA-01 2 95848335 95848335 G A ZNF2 3'UTR 0.42 TCGA-IR-A3LA-01 2 95940418 95940418 G C PROM2 Missense_Mutation p.D29H 0.39 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-IR-A3LA-01 2 97019969 97019969 G C NCAPH Missense_Mutation p.D351H 0.51 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 2 9728405 9728405 C G YWHAQ Missense_Mutation p.K157N 0.48 tolerated_low_confidence(0.08) possibly_damaging(0.846) TCGA-IR-A3LA-01 2 97363311 97363311 G C FER1L5 Intron 0.50 TCGA-IR-A3LA-01 2 97363433 97363433 C G FER1L5 RNA 0.57 TCGA-IR-A3LA-01 2 98834374 98834374 C G VWA3B Missense_Mutation p.F634L 0.34 tolerated(0.07) probably_damaging(0.914) TCGA-IR-A3LA-01 2 99162457 99162457 G C INPP4A Missense_Mutation p.L325F 0.42 deleterious(0.05) probably_damaging(1) TCGA-IR-A3LA-01 2 99721839 99721839 C G TSGA10 Missense_Mutation p.E148Q 0.63 tolerated(0.32) benign(0.017) TCGA-IR-A3LA-01 2 99767059 99767059 C G C2ORF15 Missense_Mutation p.S47C 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-IR-A3LA-01 3 10048528 10048528 G A AC022007.5 RNA 0.37 TCGA-IR-A3LA-01 3 100962759 100962759 C G IMPG2 Missense_Mutation p.D806H 0.45 deleterious(0) possibly_damaging(0.789) TCGA-IR-A3LA-01 3 10311955 10311955 C T TATDN2 Silent p.F363F 0.41 TCGA-IR-A3LA-01 3 105377916 105377916 C T CBLB Silent p.V949V 0.40 TCGA-IR-A3LA-01 3 111805204 111805204 C T C3orf52 5'UTR 0.71 TCGA-IR-A3LA-01 3 111835488 111835488 G C C3orf52 Splice_Site p.X133_splice 0.52 TCGA-IR-A3LA-01 3 113063511 113063511 C G WDR52 Silent p.L1038L 0.53 TCGA-IR-A3LA-01 3 113678541 113678541 C G ZDHHC23 Intron 0.50 TCGA-IR-A3LA-01 3 113775843 113775843 C T QTRTD1 Intron 0.38 TCGA-IR-A3LA-01 3 120067653 120067653 C G LRRC58 Missense_Mutation p.Q146H 0.32 tolerated(0.13) benign(0.007) TCGA-IR-A3LA-01 3 121206962 121206962 G A POLQ Nonsense_Mutation p.Q1606* 0.35 TCGA-IR-A3LA-01 3 121631876 121631876 C T SLC15A2 Missense_Mutation p.S146L 0.44 deleterious(0) benign(0.057) TCGA-IR-A3LA-01 3 122459521 122459521 C A HSPBAP1 Missense_Mutation p.D380Y 0.42 tolerated(0.17) benign(0.001) TCGA-IR-A3LA-01 3 122545852 122545852 C T DIRC2 Missense_Mutation p.L215F 0.55 tolerated(0.64) benign(0.004) TCGA-IR-A3LA-01 3 123010071 123010071 G C ADCY5 Silent p.V1072V 0.40 TCGA-IR-A3LA-01 3 124376306 124376306 G C KALRN Missense_Mutation p.K49N 0.32 deleterious(0.03) possibly_damaging(0.529) TCGA-IR-A3LA-01 3 124748248 124748248 G A HEG1 Missense_Mutation p.S134L 0.29 deleterious_low_confidence(0) possibly_damaging(0.593) TCGA-IR-A3LA-01 3 128205845 128205845 C G GATA2 Missense_Mutation p.W10C 0.52 deleterious(0) benign(0.181) TCGA-IR-A3LA-01 3 129034730 129034730 C G H1FX Missense_Mutation p.E6Q 0.38 tolerated_low_confidence(0.05) probably_damaging(0.989) TCGA-IR-A3LA-01 3 130174321 130174321 G C COL6A5 Missense_Mutation p.D2201H 0.33 tolerated(0.5) benign(0.17) TCGA-IR-A3LA-01 3 133614408 133614408 G A RAB6B 5'UTR 0.33 TCGA-IR-A3LA-01 3 135980905 135980905 C T PCCB Silent p.L201L 0.25 TCGA-IR-A3LA-01 3 138256057 138256057 G A CEP70 Silent p.L200L 0.60 TCGA-IR-A3LA-01 3 140284961 140284961 G A CLSTN2 Missense_Mutation p.E912K 0.34 tolerated(0.46) benign(0.027) TCGA-IR-A3LA-01 3 140406965 140406965 G A TRIM42 Missense_Mutation p.E481K 0.64 deleterious(0.04) benign(0.433) TCGA-IR-A3LA-01 3 142443375 142443375 C T TRPC1 5'UTR 0.48 TCGA-IR-A3LA-01 3 142567129 142567129 C G PCOLCE2 Missense_Mutation p.M126I 0.60 deleterious(0) probably_damaging(0.944) TCGA-IR-A3LA-01 3 15113376 15113376 C T ZFYVE20 3'UTR 0.32 TCGA-IR-A3LA-01 3 15116161 15116161 C T ZFYVE20 Missense_Mutation p.E495K 0.60 deleterious(0) probably_damaging(0.939) TCGA-IR-A3LA-01 3 152881867 152881867 C A RAP2B 3'UTR 0.27 TCGA-IR-A3LA-01 3 153993612 153993612 C T DHX36 3'UTR 0.22 TCGA-IR-A3LA-01 3 159610074 159610074 C A IQCJ-SCHIP1 Intron 0.76 TCGA-IR-A3LA-01 3 170184563 170184563 C T SLC7A14 3'UTR 0.73 TCGA-IR-A3LA-01 3 180381770 180381770 G C CCDC39 Nonsense_Mutation p.S32* 0.31 TCGA-IR-A3LA-01 3 185986688 185986688 C A DGKG Missense_Mutation p.V340L 0.34 deleterious(0.03) benign(0.186) TCGA-IR-A3LA-01 3 188596386 188596386 C T LPP 3'UTR 0.28 TCGA-IR-A3LA-01 3 190374011 190374011 C T IL1RAP Missense_Mutation p.S560F 0.68 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 3 191075842 191075842 C G CCDC50 Silent p.L56L 0.61 TCGA-IR-A3LA-01 3 193210784 193210784 G C ATP13A4 Missense_Mutation p.S152C 0.54 tolerated(0.16) benign(0.004) TCGA-IR-A3LA-01 3 194219534 194219534 G C ATP13A3 5'Flank 0.63 TCGA-IR-A3LA-01 3 196159282 196159282 C G UBXN7 5'UTR 0.50 TCGA-IR-A3LA-01 3 196198875 196198875 C G RNF168 Missense_Mutation p.E511Q 0.53 tolerated(0.28) benign(0.001) TCGA-IR-A3LA-01 3 23631708 23631709 - T UBE2E2 3'UTR 0.44 TCGA-IR-A3LA-01 3 33134488 33134488 C G TMPPE Missense_Mutation p.L400F 0.48 tolerated(0.1) benign(0.039) TCGA-IR-A3LA-01 3 369956 369956 C T CHL1 Missense_Mutation p.H102Y 0.25 deleterious(0.02) benign(0.377) TCGA-IR-A3LA-01 3 37032212 37032212 C G EPM2AIP1 3'UTR 0.42 TCGA-IR-A3LA-01 3 38136487 38136487 C A DLEC1 Missense_Mutation p.F679L 0.23 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LA-01 3 38136538 38136538 C T DLEC1 Silent p.F696F 0.36 TCGA-IR-A3LA-01 3 38240323 38240323 G A OXSR1 Missense_Mutation p.E135K 0.35 deleterious(0.01) benign(0.331) TCGA-IR-A3LA-01 3 384667 384667 T G CHL1 Nonsense_Mutation p.L227* 0.49 TCGA-IR-A3LA-01 3 38519415 38519415 C T ACVR2B Silent p.F108F 0.25 TCGA-IR-A3LA-01 3 38565959 38565959 C G EXOG 3'UTR 0.40 TCGA-IR-A3LA-01 3 38781028 38781028 G C SCN10A Missense_Mutation p.S753C 0.22 deleterious(0) possibly_damaging(0.89) TCGA-IR-A3LA-01 3 40351200 40351200 G C EIF1B 5'UTR 0.52 TCGA-IR-A3LA-01 3 40558125 40558125 C G ZNF620 Missense_Mutation p.S347C 0.60 tolerated(0.12) benign(0.023) TCGA-IR-A3LA-01 3 41266113 41266113 C G CTNNB1 Missense_Mutation p.S37C 0.42 deleterious(0) probably_damaging(0.986) TCGA-IR-A3LA-01 3 41277973 41277973 C G CTNNB1 Missense_Mutation p.S646C 0.37 deleterious(0.02) benign(0.382) TCGA-IR-A3LA-01 3 43392247 43392247 C G SNRK 3'UTR 0.42 TCGA-IR-A3LA-01 3 44283784 44283784 G A TOPAZ1 Missense_Mutation p.R80H 0.52 tolerated(0.23) benign(0.385) TCGA-IR-A3LA-01 3 44437913 44437913 C T TCAIM Silent p.I239I 0.51 TCGA-IR-A3LA-01 3 44449248 44449248 A T TCAIM 3'UTR 0.51 TCGA-IR-A3LA-01 3 46063162 46063162 C T XCR1 Nonsense_Mutation p.W93* 0.57 TCGA-IR-A3LA-01 3 46063418 46063418 C G XCR1 Missense_Mutation p.E8Q 0.47 deleterious(0.03) benign(0.126) TCGA-IR-A3LA-01 3 47388150 47388150 G C KLHL18 3'UTR 0.43 TCGA-IR-A3LA-01 3 47629597 47629597 G A SMARCC1 3'UTR 0.60 TCGA-IR-A3LA-01 3 4847939 4847939 C T ITPR1 Silent p.F2405F 0.43 TCGA-IR-A3LA-01 3 49405880 49405880 G A RHOA Silent p.I86I 0.52 TCGA-IR-A3LA-01 3 49568587 49568587 C T DAG1 Missense_Mutation p.R215W 0.41 deleterious(0) possibly_damaging(0.656) TCGA-IR-A3LA-01 3 49705917 49705917 G C BSN 3'UTR 0.45 TCGA-IR-A3LA-01 3 50363328 50363328 C G TUSC2 3'UTR 0.47 TCGA-IR-A3LA-01 3 50380604 50380604 C G ZMYND10 Missense_Mutation p.E182Q 0.38 tolerated(0.2) benign(0.011) TCGA-IR-A3LA-01 3 50684590 50684590 G A MAPKAPK3 Missense_Mutation p.A318T 0.45 tolerated(0.33) benign(0.003) TCGA-IR-A3LA-01 3 51423719 51423719 G C MANF Missense_Mutation p.E59Q 0.50 tolerated(0.06) probably_damaging(0.951) TCGA-IR-A3LA-01 3 51433758 51433758 G A VPRBP 3'UTR 0.33 TCGA-IR-A3LA-01 3 51667945 51667945 G C RAD54L2 Missense_Mutation p.E346Q 0.36 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 3 51812702 51812702 G C IQCF6 Missense_Mutation p.I87M 0.39 deleterious(0.02) benign(0.024) TCGA-IR-A3LA-01 3 52397041 52397041 C G DNAH1 Missense_Mutation p.P1709A 0.33 probably_damaging(1) TCGA-IR-A3LA-01 3 52580069 52580069 C G PBRM1 3'Flank 0.41 TCGA-IR-A3LA-01 3 52864423 52864423 C A ITIH4 Intron 0.39 TCGA-IR-A3LA-01 3 53916116 53916116 C G ACTR8 Missense_Mutation p.E5Q 0.27 deleterious_low_confidence(0.03) unknown(0) TCGA-IR-A3LA-01 3 57108853 57108853 C T SPATA12 3'UTR 0.53 TCGA-IR-A3LA-01 3 58413856 58413856 C T PDHB Missense_Mutation p.D329N 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-IR-A3LA-01 3 62860378 62860378 C G CADPS Missense_Mutation p.Q109H 0.35 tolerated(0.19) unknown(0) TCGA-IR-A3LA-01 3 65340778 65340779 - CCCA MAGI1 3'Flank 0.35 TCGA-IR-A3LA-01 3 65415613 65415613 C T MAGI1 Silent p.V583V 0.33 TCGA-IR-A3LA-01 3 6903211 6903211 G A GRM7 Missense_Mutation p.E46K 0.48 tolerated(0.07) benign(0.17) TCGA-IR-A3LA-01 3 69124658 69124658 G C UBA3 Missense_Mutation p.L63V 0.41 tolerated(0.21) benign(0.148) TCGA-IR-A3LA-01 3 69134213 69134213 C G ARL6IP5 Missense_Mutation p.I5M 0.37 deleterious(0.05) benign(0.219) TCGA-IR-A3LA-01 3 72890222 72890222 G A SHQ1 Nonsense_Mutation p.R154* 0.35 TCGA-IR-A3LA-01 3 77671452 77671452 C G ROBO2 Missense_Mutation p.S1226C 0.42 tolerated(0.06) possibly_damaging(0.7) TCGA-IR-A3LA-01 3 93768272 93768272 G A ARL13B Silent p.K349K 0.42 TCGA-IR-A3LA-01 3 9438177 9438177 G C SETD5 5'Flank 0.49 TCGA-IR-A3LA-01 3 97593589 97593589 G T CRYBG3 Missense_Mutation p.R1184I 0.81 TCGA-IR-A3LA-01 3 9791867 9791867 G A OGG1 5'UTR 0.40 TCGA-IR-A3LA-01 3 9799495 9799495 C T CAMK1 Missense_Mutation p.M316I 0.42 tolerated(0.15) probably_damaging(0.958) TCGA-IR-A3LA-01 3 98520480 98520480 C T DCBLD2 Missense_Mutation p.E562K 0.51 tolerated(0.28) benign(0.049) TCGA-IR-A3LA-01 3 9879801 9879801 G C RPUSD3 Missense_Mutation p.L319V 0.30 deleterious(0) possibly_damaging(0.685) TCGA-IR-A3LA-01 3 99566860 99566860 G A FILIP1L Intron 0.42 TCGA-IR-A3LA-01 4 100472125 100472125 G A TRMT10A Missense_Mutation p.S223L 0.23 tolerated(0.33) benign(0.006) TCGA-IR-A3LA-01 4 100516030 100516030 G A MTTP Missense_Mutation p.G300E 0.62 tolerated(0.63) benign(0.008) TCGA-IR-A3LA-01 4 101946858 101946858 C G PPP3CA 3'UTR 0.61 TCGA-IR-A3LA-01 4 103174542 103174542 G A SLC39A8 3'UTR 0.35 TCGA-IR-A3LA-01 4 103987634 103987634 C G SLC9B2 Missense_Mutation p.D41H 0.53 deleterious(0) benign(0.352) TCGA-IR-A3LA-01 4 10446572 10446572 C G ZNF518B Missense_Mutation p.E461Q 0.55 tolerated(0.18) benign(0.335) TCGA-IR-A3LA-01 4 110460876 110460876 A G SEC24B 3'UTR 0.54 TCGA-IR-A3LA-01 4 110667437 110667437 G C CFI Missense_Mutation p.S457C 0.60 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 4 110745599 110745599 G T GAR1 3'UTR 0.37 TCGA-IR-A3LA-01 4 111397773 111397773 C G ENPEP Nonsense_Mutation p.S68* 0.38 TCGA-IR-A3LA-01 4 111431398 111431398 C T ENPEP Intron 0.56 TCGA-IR-A3LA-01 4 113474997 113474997 C T C4orf21 Silent p.L1780L 0.35 TCGA-IR-A3LA-01 4 114170951 114170951 G A ANK2 Missense_Mutation p.R308Q 0.43 probably_damaging(0.999) TCGA-IR-A3LA-01 4 115891599 115891599 T C NDST4 Missense_Mutation p.K403R 0.37 tolerated(0.22) benign(0.003) TCGA-IR-A3LA-01 4 119204248 119204248 C T PRSS12 Silent p.R686R 0.40 TCGA-IR-A3LA-01 4 129191507 129191507 G C PGRMC2 3'UTR 0.27 TCGA-IR-A3LA-01 4 1316232 1316232 G A MAEA Missense_Mutation p.E174K 0.42 tolerated(0.13) possibly_damaging(0.516) TCGA-IR-A3LA-01 4 13339800 13339800 G A HSP90AB2P RNA 0.41 TCGA-IR-A3LA-01 4 139966404 139966404 G A CCRN4L Missense_Mutation p.E358K 0.24 deleterious(0) probably_damaging(0.954) TCGA-IR-A3LA-01 4 140270728 140270728 C G NAA15 Silent p.L268L 0.43 TCGA-IR-A3LA-01 4 141484349 141484349 C G UCP1 Silent p.L181L 0.64 TCGA-IR-A3LA-01 4 143003324 143003324 C T INPP4B Silent p.L834L 0.17 TCGA-IR-A3LA-01 4 146567305 146567305 G A MMAA Missense_Mutation p.V244I 0.22 deleterious(0.02) possibly_damaging(0.864) TCGA-IR-A3LA-01 4 148463811 148463811 C T EDNRA 3'UTR 0.36 TCGA-IR-A3LA-01 4 153832491 153832491 G A ARFIP1 3'UTR 0.17 TCGA-IR-A3LA-01 4 156824907 156824907 C T TDO2 5'UTR 0.30 TCGA-IR-A3LA-01 4 15704793 15704793 C G BST1 Missense_Mutation p.S9W 0.38 tolerated(0.11) possibly_damaging(0.854) TCGA-IR-A3LA-01 4 15995622 15995622 G C PROM1 Silent p.L585L 0.52 TCGA-IR-A3LA-01 4 16025931 16025931 G C PROM1 Missense_Mutation p.F227L 0.38 tolerated(0.76) benign(0.013) TCGA-IR-A3LA-01 4 162508625 162508625 G C FSTL5 Missense_Mutation p.H333D 0.60 deleterious(0) probably_damaging(0.979) TCGA-IR-A3LA-01 4 164069547 164069547 C T NAF1 Missense_Mutation p.E194K 0.16 deleterious(0.01) possibly_damaging(0.452) TCGA-IR-A3LA-01 4 164246841 164246841 C T NPY1R Missense_Mutation p.E257K 0.20 tolerated(0.29) possibly_damaging(0.771) TCGA-IR-A3LA-01 4 169013830 169013830 G A ANXA10 5'UTR 0.28 TCGA-IR-A3LA-01 4 170315542 170315542 C G NEK1 3'UTR 0.27 TCGA-IR-A3LA-01 4 170398404 170398404 G C NEK1 Missense_Mutation p.H769D 0.33 tolerated(0.23) benign(0.001) TCGA-IR-A3LA-01 4 177082071 177082071 G A WDR17 Missense_Mutation p.E914K 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-IR-A3LA-01 4 1824792 1824792 C G LETM1 Missense_Mutation p.E467Q 0.52 deleterious(0.03) probably_damaging(0.996) TCGA-IR-A3LA-01 4 1946385 1946385 C A WHSC1 Intron 0.49 TCGA-IR-A3LA-01 4 24810020 24810020 C G CCDC149 Silent p.V527V 0.37 TCGA-IR-A3LA-01 4 2632821 2632821 C G FAM193A Missense_Mutation p.F30L 0.35 tolerated(0.08) probably_damaging(0.961) TCGA-IR-A3LA-01 4 3447863 3447863 G T HGFAC Missense_Mutation p.K399N 0.44 deleterious(0) benign(0.35) TCGA-IR-A3LA-01 4 3447866 3447866 G T HGFAC Missense_Mutation p.K400N 0.44 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LA-01 4 40045257 40045257 G A RP11-333E13.4 RNA 0.47 TCGA-IR-A3LA-01 4 4190672 4190672 C G OTOP1 Missense_Mutation p.R566P 0.24 deleterious(0) probably_damaging(0.979) TCGA-IR-A3LA-01 4 437142 437142 G A ZNF721 Missense_Mutation p.R372W 0.43 tolerated(0.38) benign(0.029) TCGA-IR-A3LA-01 4 53461351 53461351 C T USP46 3'UTR 0.74 TCGA-IR-A3LA-01 4 55603353 55603353 G A KIT Missense_Mutation p.M903I 0.42 deleterious(0) probably_damaging(0.952) TCGA-IR-A3LA-01 4 55946116 55946116 G C KDR Missense_Mutation p.P1355A 0.46 tolerated_low_confidence(0.13) benign(0.005) TCGA-IR-A3LA-01 4 5620249 5620249 C T EVC2 Missense_Mutation p.E888K 0.34 tolerated(0.07) probably_damaging(0.997) TCGA-IR-A3LA-01 4 5633675 5633675 C T EVC2 Missense_Mutation p.E519K 0.39 deleterious(0) possibly_damaging(0.676) TCGA-IR-A3LA-01 4 5642493 5642493 G A EVC2 Silent p.I406I 0.34 TCGA-IR-A3LA-01 4 57204459 57204459 C T AASDH 3'UTR 0.53 TCGA-IR-A3LA-01 4 57312951 57312951 G A PAICS Missense_Mutation p.R109K 0.47 benign(0.014) TCGA-IR-A3LA-01 4 57829794 57829794 C G NOA1 Missense_Mutation p.R640T 0.43 tolerated(0.34) benign(0.009) TCGA-IR-A3LA-01 4 57876625 57876625 G A POLR2B Silent p.L501L 0.26 TCGA-IR-A3LA-01 4 5830514 5830514 C G EVC 3'UTR 0.43 TCGA-IR-A3LA-01 4 6331054 6331054 G C PPP2R2C Silent p.L329L 0.48 TCGA-IR-A3LA-01 4 68928799 68928799 G C TMPRSS11F Intron 0.33 TCGA-IR-A3LA-01 4 7033827 7033827 C G TBC1D14 3'UTR 0.43 TCGA-IR-A3LA-01 4 70599967 70599967 G A SULT1B1 Missense_Mutation p.R131C 0.27 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LA-01 4 72319242 72319242 G C SLC4A4 Missense_Mutation p.K451N 0.55 deleterious(0) possibly_damaging(0.517) TCGA-IR-A3LA-01 4 72412243 72412243 G A SLC4A4 Silent p.V873V 0.70 TCGA-IR-A3LA-01 4 72437726 72437726 G A SLC4A4 3'UTR 0.30 TCGA-IR-A3LA-01 4 74321433 74321433 G A AFP 3'UTR 0.24 TCGA-IR-A3LA-01 4 74903836 74903836 C T CXCL3 Silent p.Q94Q 0.35 TCGA-IR-A3LA-01 4 75023387 75023387 C G AC093677.1 Missense_Mutation p.E233D 0.59 unknown(0) TCGA-IR-A3LA-01 4 75023479 75023479 C G AC093677.1 Missense_Mutation p.E203Q 0.58 unknown(0) TCGA-IR-A3LA-01 4 75671819 75671819 C T BTC 3'UTR 0.23 TCGA-IR-A3LA-01 4 76721774 76721774 G A USO1 Silent p.E571E 0.52 TCGA-IR-A3LA-01 4 77231252 77231252 C T FAM47E-STBD1 3'UTR 0.38 TCGA-IR-A3LA-01 4 77305711 77305711 G C CCDC158 Missense_Mutation p.I132M 0.73 deleterious(0.02) probably_damaging(0.984) TCGA-IR-A3LA-01 4 7787927 7787927 G A AFAP1 Silent p.N508N 0.43 TCGA-IR-A3LA-01 4 78082834 78082834 G A CCNG2 Silent p.L213L 0.26 TCGA-IR-A3LA-01 4 79475635 79475635 C G ANXA3 Missense_Mutation p.S3C 0.51 deleterious(0) benign(0.116) TCGA-IR-A3LA-01 4 83905683 83905683 C T LIN54 Silent p.Q105Q 0.57 TCGA-IR-A3LA-01 4 84376882 84376882 C T HELQ 5'UTR 0.68 TCGA-IR-A3LA-01 4 87707030 87707030 G C PTPN13 Missense_Mutation p.E2101Q 0.37 tolerated(0.17) possibly_damaging(0.662) TCGA-IR-A3LA-01 4 88536350 88536350 G A DSPP Missense_Mutation p.D846N 0.34 unknown(0) TCGA-IR-A3LA-01 4 88767194 88767194 G A MEPE Missense_Mutation p.E392K 0.48 tolerated(0.29) benign(0.063) TCGA-IR-A3LA-01 4 89363429 89363429 G A HERC6 Silent p.Q962Q 0.20 TCGA-IR-A3LA-01 4 89407319 89407319 C G HERC5 Silent p.L597L 0.61 TCGA-IR-A3LA-01 4 907427 907427 C G GAK Missense_Mutation p.D59H 0.50 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LA-01 4 954251 954251 C T DGKQ 3'UTR 0.50 TCGA-IR-A3LA-01 5 100147150 100147150 G A ST8SIA4 3'UTR 0.33 TCGA-IR-A3LA-01 5 112350383 112350383 G A DCP2 3'UTR 0.45 TCGA-IR-A3LA-01 5 112363160 112363160 C G MCC Missense_Mutation p.E967Q 0.44 deleterious(0.01) probably_damaging(0.979) TCGA-IR-A3LA-01 5 115177250 115177250 C G ATG12 5'UTR 0.60 TCGA-IR-A3LA-01 5 121759246 121759246 G A SNCAIP Missense_Mutation p.E272K 0.38 tolerated(0.21) benign(0.297) TCGA-IR-A3LA-01 5 123984157 123984157 C G ZNF608 Missense_Mutation p.K640N 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-IR-A3LA-01 5 123984798 123984798 C G ZNF608 Missense_Mutation p.E427Q 0.31 deleterious(0) possibly_damaging(0.812) TCGA-IR-A3LA-01 5 127697517 127697517 C G FBN2 Missense_Mutation p.R818T 0.38 tolerated(0.2) benign(0.41) TCGA-IR-A3LA-01 5 128983517 128983517 G A ADAMTS19 Silent p.E638E 0.41 TCGA-IR-A3LA-01 5 129241194 129241194 C T CHSY3 Silent p.I224I 0.40 TCGA-IR-A3LA-01 5 131714085 131714085 G C SLC22A5 Missense_Mutation p.E137Q 0.40 tolerated(0.06) benign(0.05) TCGA-IR-A3LA-01 5 131796532 131796532 G A C5orf56 Missense_Mutation p.E123K 0.33 tolerated_low_confidence(0.12) benign(0) TCGA-IR-A3LA-01 5 133873703 133873703 C G JADE2 Nonsense_Mutation p.S28* 0.54 TCGA-IR-A3LA-01 5 136997701 136997701 G C KLHL3 Nonsense_Mutation p.S219* 0.48 TCGA-IR-A3LA-01 5 138268317 138268317 C T CTNNA1 Silent p.I783I 0.43 TCGA-IR-A3LA-01 5 138723467 138723467 C G MZB1 Missense_Mutation p.R186T 0.20 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-IR-A3LA-01 5 138723536 138723536 C A MZB1 Missense_Mutation p.R163L 0.30 tolerated(0.23) benign(0.027) TCGA-IR-A3LA-01 5 139815719 139815719 C G ANKHD1 Missense_Mutation p.L113V 0.65 unknown(0) TCGA-IR-A3LA-01 5 139937066 139937066 C T SRA1 Missense_Mutation p.R3H 0.61 tolerated_low_confidence(0.25) benign(0.001) TCGA-IR-A3LA-01 5 140070868 140070868 C G HARS Missense_Mutation p.E8Q 0.40 tolerated(0.73) benign(0.014) TCGA-IR-A3LA-01 5 140201806 140201806 C G PCDHA5 Missense_Mutation p.S149W 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IR-A3LA-01 5 140249474 140249474 C G PCDHA11 Silent p.L262L 0.64 TCGA-IR-A3LA-01 5 140262969 140262969 C T PCDHA13 Silent p.I372I 0.29 TCGA-IR-A3LA-01 5 140482531 140482531 C G PCDHB3 Missense_Mutation p.F766L 0.48 deleterious_low_confidence(0.01) benign(0.354) TCGA-IR-A3LA-01 5 140616070 140616070 C T PCDHB18 RNA 0.50 TCGA-IR-A3LA-01 5 140625700 140625700 G C PCDHB15 Missense_Mutation p.R185P 0.53 deleterious_low_confidence(0.02) benign(0.012) TCGA-IR-A3LA-01 5 145198965 145198965 G C PRELID2 Missense_Mutation p.L74V 0.60 tolerated_low_confidence(0.58) benign(0.002) TCGA-IR-A3LA-01 5 145826899 145826899 C T TCERG1 5'UTR 0.49 TCGA-IR-A3LA-01 5 148422400 148422400 C A SH3TC2 Missense_Mutation p.G129V 0.54 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 5 148977374 148977374 G A ARHGEF37 Silent p.G14G 0.42 TCGA-IR-A3LA-01 5 149226797 149226797 C G PPARGC1B Intron 0.55 TCGA-IR-A3LA-01 5 149226995 149226995 C T PPARGC1B Intron 0.44 TCGA-IR-A3LA-01 5 149493684 149493684 C G PDGFRB 3'UTR 0.31 TCGA-IR-A3LA-01 5 149576289 149576289 C A SLC6A7 Silent p.L76L 0.25 TCGA-IR-A3LA-01 5 149581972 149581972 C G SLC6A7 Silent p.L307L 0.48 TCGA-IR-A3LA-01 5 150947186 150947186 G C FAT2 Nonsense_Mutation p.S436* 0.50 TCGA-IR-A3LA-01 5 153078478 153078478 G A GRIA1 Missense_Mutation p.D443N 0.54 deleterious(0.01) possibly_damaging(0.639) TCGA-IR-A3LA-01 5 154188117 154188117 G C LARP1 Missense_Mutation p.E856Q 0.39 deleterious(0.03) possibly_damaging(0.87) TCGA-IR-A3LA-01 5 154194367 154194367 G A LARP1 3'UTR 0.38 TCGA-IR-A3LA-01 5 161116026 161116026 G A GABRA6 Silent p.E99E 0.26 TCGA-IR-A3LA-01 5 162887117 162887117 A T NUDCD2 5'UTR 0.33 TCGA-IR-A3LA-01 5 162945144 162945144 C G MAT2B Intron 0.43 TCGA-IR-A3LA-01 5 167990942 167990942 C T PANK3 Missense_Mutation p.G255E 0.29 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 5 169020517 169020517 C G SPDL1 Missense_Mutation p.L166V 0.33 tolerated(0.19) probably_damaging(0.999) TCGA-IR-A3LA-01 5 169931390 169931390 G A KCNIP1 5'Flank 0.31 TCGA-IR-A3LA-01 5 171765890 171765890 G C SH3PXD2B Missense_Mutation p.S740C 0.25 tolerated_low_confidence(0.07) benign(0.009) TCGA-IR-A3LA-01 5 173317731 173317731 C T CPEB4 Missense_Mutation p.S332L 0.53 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IR-A3LA-01 5 174869677 174869677 G A DRD1 Silent p.I142I 0.39 TCGA-IR-A3LA-01 5 175954552 175954552 C T RNF44 3'UTR 0.82 TCGA-IR-A3LA-01 5 176026585 176026585 G C GPRIN1 Missense_Mutation p.S84C 0.31 deleterious(0) possibly_damaging(0.873) TCGA-IR-A3LA-01 5 178310800 178310826 CCACTCAACACTTATTATTCATGAGCG - ZNF354B In_Frame_Del p.H450_R458del 0.52 TCGA-IR-A3LA-01 5 178310916 178310916 A G ZNF354B Missense_Mutation p.H488R 0.50 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 5 178408753 178408753 G C GRM6 Missense_Mutation p.P847A 0.45 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 5 180029476 180029476 C G FLT4 3'UTR 0.48 TCGA-IR-A3LA-01 5 19473351 19473351 G A CDH18 Missense_Mutation p.S786F 0.43 deleterious(0) benign(0.118) TCGA-IR-A3LA-01 5 32088709 32088709 C A PDZD2 Missense_Mutation p.H1719N 0.42 tolerated(0.06) benign(0.164) TCGA-IR-A3LA-01 5 32710861 32710861 C T NPR3 5'Flank 0.34 TCGA-IR-A3LA-01 5 33989175 33989175 C G AMACR Intron 0.39 TCGA-IR-A3LA-01 5 35641588 35641588 C G SPEF2 Missense_Mutation p.L73V 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-IR-A3LA-01 5 36677065 36677065 G C SLC1A3 Silent p.V213V 0.43 TCGA-IR-A3LA-01 5 38939954 38939954 C T RICTOR 3'UTR 0.49 TCGA-IR-A3LA-01 5 38963098 38963098 C T RICTOR Missense_Mutation p.M482I 0.36 tolerated(0.08) benign(0.079) TCGA-IR-A3LA-01 5 41510616 41510616 G A PLCXD3 Nonsense_Mutation p.Q5* 0.29 TCGA-IR-A3LA-01 5 45303719 45303719 C T HCN1 Missense_Mutation p.D534N 0.42 deleterious(0) probably_damaging(0.99) TCGA-IR-A3LA-01 5 52386428 52386428 G A ITGA2 Silent p.%3D 0.41 TCGA-IR-A3LA-01 5 54329656 54329656 G C GZMK Missense_Mutation p.E233Q 0.43 tolerated(0.05) benign(0.002) TCGA-IR-A3LA-01 5 54591326 54591326 C T DHX29 Missense_Mutation p.E178K 0.48 tolerated(0.89) benign(0.002) TCGA-IR-A3LA-01 5 55008344 55008344 G T SLC38A9 5'UTR 0.50 TCGA-IR-A3LA-01 5 55472045 55472045 C G ANKRD55 Missense_Mutation p.K82N 0.40 deleterious(0.03) probably_damaging(1) TCGA-IR-A3LA-01 5 56155681 56155681 C T MAP3K1 Missense_Mutation p.S258L 0.46 deleterious_low_confidence(0.01) benign(0.154) TCGA-IR-A3LA-01 5 63496634 63496634 G C RNF180 Splice_Site p.X1_splice 0.48 TCGA-IR-A3LA-01 5 64814369 64814369 C T CENPK Missense_Mutation p.R248H 0.40 deleterious(0) probably_damaging(0.985) TCGA-IR-A3LA-01 5 66084548 66084548 G A MAST4 Missense_Mutation p.A190T 0.41 benign(0.012) TCGA-IR-A3LA-01 5 66300711 66300711 G C MAST4 Intron 0.44 TCGA-IR-A3LA-01 5 67584467 67584467 G C PIK3R1 Intron 0.41 TCGA-IR-A3LA-01 5 68647889 68647889 C G RP11-1113N2.4 3'Flank 0.41 TCGA-IR-A3LA-01 5 70751564 70751564 G A BDP1 5'UTR 0.48 TCGA-IR-A3LA-01 5 70808110 70808110 G C BDP1 Missense_Mutation p.E1368Q 0.39 deleterious(0.01) possibly_damaging(0.731) TCGA-IR-A3LA-01 5 71491658 71491658 G C MAP1B Missense_Mutation p.E826Q 0.37 probably_damaging(0.986) TCGA-IR-A3LA-01 5 72173148 72173148 G C TNPO1 Missense_Mutation p.D299H 0.45 deleterious(0.05) benign(0.002) TCGA-IR-A3LA-01 5 72204697 72204697 G A TNPO1 3'UTR 0.49 TCGA-IR-A3LA-01 5 74865228 74865228 G A POLK Missense_Mutation p.D107N 0.50 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 5 74865282 74865282 G A POLK Missense_Mutation p.D125N 0.42 tolerated(0.11) benign(0.135) TCGA-IR-A3LA-01 5 7827422 7827422 C T ADCY2 3'UTR 0.51 TCGA-IR-A3LA-01 5 78416249 78416249 G A BHMT Missense_Mutation p.G121E 0.38 deleterious(0) probably_damaging(0.963) TCGA-IR-A3LA-01 5 79770494 79770494 C G ZFYVE16 Missense_Mutation p.L1436V 0.39 tolerated(0.18) possibly_damaging(0.676) TCGA-IR-A3LA-01 5 89981736 89981736 C G GPR98 Missense_Mutation p.I2138M 0.49 possibly_damaging(0.801) TCGA-IR-A3LA-01 5 96507007 96507007 C A RIOK2 Missense_Mutation p.D228Y 0.44 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 6 106968381 106968381 G A AIM1 Missense_Mutation p.D692N 0.59 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 6 106968393 106968393 G A AIM1 Missense_Mutation p.D696N 0.54 deleterious(0.03) probably_damaging(1) TCGA-IR-A3LA-01 6 10995297 10995297 G C ELOVL2 Missense_Mutation p.H150D 0.28 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 6 110934083 110934083 C T CDK19 3'UTR 0.24 TCGA-IR-A3LA-01 6 116818024 116818024 C G TRAPPC3L 3'UTR 0.26 TCGA-IR-A3LA-01 6 116818055 116818055 C G TRAPPC3L 3'UTR 0.22 TCGA-IR-A3LA-01 6 116988229 116988229 C A ZUFSP Nonsense_Mutation p.E43* 0.69 TCGA-IR-A3LA-01 6 11735809 11735809 G A ADTRP Silent p.Y184Y 0.85 TCGA-IR-A3LA-01 6 117622176 117622176 C A ROS1 Nonsense_Mutation p.E2232* 0.24 TCGA-IR-A3LA-01 6 117622181 117622181 C G ROS1 Missense_Mutation p.R2230T 0.21 tolerated(0.53) benign(0.008) TCGA-IR-A3LA-01 6 119215450 119215450 C G ASF1A 5'UTR 0.26 TCGA-IR-A3LA-01 6 122743932 122743932 G A HSF2 Silent p.Q300Q 0.28 TCGA-IR-A3LA-01 6 126249855 126249855 G A NCOA7 Missense_Mutation p.D923N 0.56 tolerated(0.15) probably_damaging(0.965) TCGA-IR-A3LA-01 6 127762471 127762471 G A KIAA0408 3'Flank 0.57 TCGA-IR-A3LA-01 6 128318103 128318103 C G PTPRK Missense_Mutation p.D904H 0.68 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 6 131603898 131603898 G T AKAP7 3'UTR 0.26 TCGA-IR-A3LA-01 6 133035100 133035100 G A VNN1 Silent p.F25F 0.29 TCGA-IR-A3LA-01 6 133065601 133065601 C G VNN2 Missense_Mutation p.K467N 0.62 deleterious(0.04) benign(0.28) TCGA-IR-A3LA-01 6 136589421 136589421 G A BCLAF1 Missense_Mutation p.S759F 0.09 deleterious(0) possibly_damaging(0.683) TCGA-IR-A3LA-01 6 136610928 136610928 G A BCLAF1 5'UTR 0.26 TCGA-IR-A3LA-01 6 136934374 136934374 G A MAP3K5 Missense_Mutation p.R767C 0.52 deleterious(0) possibly_damaging(0.838) TCGA-IR-A3LA-01 6 138196079 138196079 G A TNFAIP3 Silent p.K131K 0.56 TCGA-IR-A3LA-01 6 143090691 143090691 G C HIVEP2 Missense_Mutation p.Q1729E 0.34 tolerated(0.18) probably_damaging(0.977) TCGA-IR-A3LA-01 6 143091090 143091090 C A HIVEP2 Nonsense_Mutation p.E1596* 0.24 TCGA-IR-A3LA-01 6 151672053 151672053 G A AKAP12 Missense_Mutation p.V843I 0.47 tolerated(0.28) benign(0.3) TCGA-IR-A3LA-01 6 152163896 152163896 A G ESR1 Missense_Mutation p.K206R 0.60 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 6 152599269 152599269 C T SYNE1 Silent p.L6176L 0.35 TCGA-IR-A3LA-01 6 152668191 152668191 C T SYNE1 Intron 0.25 TCGA-IR-A3LA-01 6 154412697 154412697 G C OPRM1 Intron 0.28 TCGA-IR-A3LA-01 6 160666565 160666565 C G SLC22A2 Missense_Mutation p.E324Q 0.76 tolerated(0.11) benign(0.128) TCGA-IR-A3LA-01 6 167728806 167728806 C G UNC93A Missense_Mutation p.L414V 0.10 tolerated(0.19) benign(0.081) TCGA-IR-A3LA-01 6 17826009 17826009 C T KIF13A Silent p.L592L 0.48 TCGA-IR-A3LA-01 6 17837725 17837725 G A KIF13A Missense_Mutation p.S307L 0.36 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 6 18225822 18225822 C T DEK 3'UTR 0.34 TCGA-IR-A3LA-01 6 26056270 26056270 C G HIST1H1C Missense_Mutation p.K129N 0.35 tolerated(0.07) unknown(0) TCGA-IR-A3LA-01 6 26123904 26123904 C T HIST1H2BC Missense_Mutation p.E77K 0.39 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-IR-A3LA-01 6 26156684 26156684 G A HIST1H1E Silent p.K22K 0.35 TCGA-IR-A3LA-01 6 26637052 26637052 C G ZNF322 3'UTR 0.55 TCGA-IR-A3LA-01 6 27114563 27114563 C A HIST1H2BK Silent p.A5A 0.34 TCGA-IR-A3LA-01 6 27834888 27834888 C T HIST1H1B Silent p.K140K 0.38 TCGA-IR-A3LA-01 6 2900832 2900832 G C SERPINB9 Missense_Mutation p.S5C 0.48 tolerated(0.3) benign(0.274) TCGA-IR-A3LA-01 6 31125293 31125293 C T CCHCR1 Missense_Mutation p.D29N 0.36 deleterious_low_confidence(0.01) benign(0.342) TCGA-IR-A3LA-01 6 31127136 31127136 C G TCF19 5'UTR 0.31 TCGA-IR-A3LA-01 6 31600440 31600440 C T PRRC2A Silent p.F1330F 0.57 TCGA-IR-A3LA-01 6 31638730 31638730 G C LY6G5B Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0.01) benign(0.11) TCGA-IR-A3LA-01 6 31730810 31730810 C A SAPCD1 5'UTR 0.60 TCGA-IR-A3LA-01 6 31730825 31730825 C G SAPCD1 5'UTR 0.58 TCGA-IR-A3LA-01 6 31795657 31795657 C G HSPA1B 5'UTR 0.61 TCGA-IR-A3LA-01 6 31929372 31929372 C G SKIV2L Missense_Mutation p.Q280E 0.37 tolerated(0.52) benign(0.001) TCGA-IR-A3LA-01 6 32122483 32122483 C T PPT2 Missense_Mutation p.P44S 0.43 deleterious(0.01) probably_damaging(0.98) TCGA-IR-A3LA-01 6 3272615 3272615 C T SLC22A23 3'UTR 0.38 TCGA-IR-A3LA-01 6 33174412 33174412 C T HSD17B8 Intron 0.33 TCGA-IR-A3LA-01 6 33174550 33174550 G C HSD17B8 3'UTR 0.43 TCGA-IR-A3LA-01 6 33218669 33218669 G C VPS52 Missense_Mutation p.I707M 0.41 deleterious(0) possibly_damaging(0.851) TCGA-IR-A3LA-01 6 33239391 33239391 G C VPS52 Nonsense_Mutation p.S21* 0.33 TCGA-IR-A3LA-01 6 33689478 33689478 C T IP6K3 3'UTR 0.48 TCGA-IR-A3LA-01 6 35394394 35394394 C G PPARD 3'UTR 0.53 TCGA-IR-A3LA-01 6 37138618 37138618 C G PIM1 Missense_Mutation p.S51W 0.57 deleterious(0) probably_damaging(0.983) TCGA-IR-A3LA-01 6 37300218 37300218 G A TBC1D22B 3'UTR 0.45 TCGA-IR-A3LA-01 6 37449135 37449135 G A CMTR1 3'UTR 0.21 TCGA-IR-A3LA-01 6 39398872 39398872 C T KIF6 Missense_Mutation p.D571N 0.36 tolerated(0.12) benign(0.134) TCGA-IR-A3LA-01 6 40312384 40312384 C G LINC00951 RNA 0.47 TCGA-IR-A3LA-01 6 42852380 42852380 G T RPL7L1 Missense_Mutation p.R105I 0.51 deleterious(0) possibly_damaging(0.629) TCGA-IR-A3LA-01 6 43230657 43230657 G C TTBK1 Missense_Mutation p.E519Q 0.39 possibly_damaging(0.501) TCGA-IR-A3LA-01 6 43322647 43322647 G C ZNF318 Missense_Mutation p.Q809E 0.36 benign(0.281) TCGA-IR-A3LA-01 6 43323025 43323025 G A ZNF318 Missense_Mutation p.H683Y 0.39 benign(0.017) TCGA-IR-A3LA-01 6 43608105 43608105 C T MAD2L1BP Silent p.N252N 0.42 TCGA-IR-A3LA-01 6 43745289 43745289 G A VEGFA Missense_Mutation p.E248K 0.36 tolerated(0.07) possibly_damaging(0.525) TCGA-IR-A3LA-01 6 43754002 43754002 C G VEGFA 3'Flank 0.55 TCGA-IR-A3LA-01 6 43970470 43970470 G A C6orf223 Silent p.R112R 0.30 TCGA-IR-A3LA-01 6 44150675 44150675 C G CAPN11 Intron 0.51 TCGA-IR-A3LA-01 6 44279806 44279806 C A AARS2 Intron 0.33 TCGA-IR-A3LA-01 6 46605600 46605600 C G CYP39A1 Missense_Mutation p.E202Q 0.52 tolerated(0.05) probably_damaging(0.913) TCGA-IR-A3LA-01 6 46967979 46967979 G A GPR110 Nonsense_Mutation p.Q905* 0.33 TCGA-IR-A3LA-01 6 47577036 47577036 C G CD2AP Missense_Mutation p.H604D 0.38 deleterious(0.04) benign(0.109) TCGA-IR-A3LA-01 6 47594497 47594497 G C CD2AP 3'UTR 0.40 TCGA-IR-A3LA-01 6 47846660 47846660 G A PTCHD4 Silent p.F640F 0.41 TCGA-IR-A3LA-01 6 47869482 47869482 C G PTCHD4 Intron 0.27 TCGA-IR-A3LA-01 6 49518718 49518718 C T C6orf141 Silent p.L71L 0.42 TCGA-IR-A3LA-01 6 49928006 49928006 C G DEFB114 Nonstop_Mutation p.*70Sext*? 0.44 TCGA-IR-A3LA-01 6 51907766 51907766 C G PKHD1 Missense_Mutation p.L996F 0.36 tolerated(0.74) benign(0.008) TCGA-IR-A3LA-01 6 53363470 53363470 C T GCLC 3'UTR 0.29 TCGA-IR-A3LA-01 6 53519746 53519746 G C KLHL31 Missense_Mutation p.Q109E 0.38 tolerated(0.55) benign(0.077) TCGA-IR-A3LA-01 6 53883738 53883738 C G MLIP 5'UTR 0.31 TCGA-IR-A3LA-01 6 56324949 56324949 C G DST Missense_Mutation p.R5078T 0.35 possibly_damaging(0.755) TCGA-IR-A3LA-01 6 56473210 56473210 G A DST Intron 0.39 TCGA-IR-A3LA-01 6 57372285 57372285 T C PRIM2 Intron 0.10 TCGA-IR-A3LA-01 6 69653776 69653776 G T BAI3 Missense_Mutation p.G362V 0.41 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 6 70040418 70040418 G A BAI3 Missense_Mutation p.G1019E 0.45 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 6 74477947 74477947 A G CD109 Missense_Mutation p.K556R 0.12 tolerated(0.16) benign(0.043) TCGA-IR-A3LA-01 6 75795167 75795167 G A COL12A1 3'UTR 0.40 TCGA-IR-A3LA-01 6 83868325 83868325 G A DOPEY1 Missense_Mutation p.D2261N 0.47 deleterious(0) benign(0.185) TCGA-IR-A3LA-01 6 86181225 86181225 C G NT5E Intron 0.36 TCGA-IR-A3LA-01 6 90383069 90383069 C G MDN1 Missense_Mutation p.D4454H 0.39 possibly_damaging(0.466) TCGA-IR-A3LA-01 6 90383842 90383842 C G MDN1 Missense_Mutation p.E4410Q 0.33 probably_damaging(0.974) TCGA-IR-A3LA-01 6 90432841 90432841 C G MDN1 Missense_Mutation p.E1934Q 0.44 benign(0.097) TCGA-IR-A3LA-01 6 96660877 96660877 G C FUT9 3'UTR 0.39 TCGA-IR-A3LA-01 6 99854029 99854029 C T PNISR Missense_Mutation p.E294K 0.35 tolerated(0.21) benign(0.115) TCGA-IR-A3LA-01 6 99881026 99881026 G A USP45 3'UTR 0.38 TCGA-IR-A3LA-01 6 99893792 99893792 G A USP45 Missense_Mutation p.S619L 0.18 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 7 100001352 100001352 C T ZCWPW1 Missense_Mutation p.E459K 0.17 tolerated(0.17) benign(0.164) TCGA-IR-A3LA-01 7 100001358 100001358 C T ZCWPW1 Missense_Mutation p.E457K 0.16 tolerated(0.32) benign(0.035) TCGA-IR-A3LA-01 7 100002656 100002656 C T ZCWPW1 Missense_Mutation p.A411T 0.28 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LA-01 7 100285844 100285844 G C GIGYF1 Silent p.L6L 0.56 TCGA-IR-A3LA-01 7 100383732 100383732 C T ZAN Silent p.S2315S 0.46 TCGA-IR-A3LA-01 7 100676823 100676823 C G MUC17 Nonsense_Mutation p.S709* 0.39 TCGA-IR-A3LA-01 7 100732201 100732201 C G TRIM56 Silent p.L536L 0.37 TCGA-IR-A3LA-01 7 100732911 100732911 G A TRIM56 3'UTR 0.36 TCGA-IR-A3LA-01 7 101870765 101870765 G A CUX1 Silent p.A1094A 0.40 TCGA-IR-A3LA-01 7 107262515 107262515 C G BCAP29 3'UTR 0.40 TCGA-IR-A3LA-01 7 111366853 111366853 C T DOCK4 3'Flank 0.35 TCGA-IR-A3LA-01 7 112459849 112459849 C T C7orf60 3'UTR 0.40 TCGA-IR-A3LA-01 7 114302201 114302201 G A FOXP2 Missense_Mutation p.E602K 0.30 deleterious(0) probably_damaging(0.983) TCGA-IR-A3LA-01 7 11446027 11446027 G A THSD7A Silent p.F1379F 0.48 TCGA-IR-A3LA-01 7 120596096 120596096 G A ING3 Intron 0.59 TCGA-IR-A3LA-01 7 121718000 121718000 C T AASS Missense_Mutation p.E852K 0.52 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LA-01 7 121942387 121942387 C T FEZF1 Silent p.L364L 0.53 TCGA-IR-A3LA-01 7 122338231 122338231 C T RNF133 Missense_Mutation p.E248K 0.39 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LA-01 7 122338412 122338412 C T RNF133 Missense_Mutation p.M187I 0.30 tolerated(0.15) benign(0.022) TCGA-IR-A3LA-01 7 124493039 124493039 C T POT1 Missense_Mutation p.D286N 0.28 tolerated(0.19) benign(0) TCGA-IR-A3LA-01 7 128845562 128845562 G C SMO Missense_Mutation p.D287H 0.68 deleterious(0.03) probably_damaging(0.91) TCGA-IR-A3LA-01 7 129821478 129821478 C G TMEM209 Missense_Mutation p.E369Q 0.33 deleterious(0.01) probably_damaging(0.932) TCGA-IR-A3LA-01 7 129821497 129821497 C T TMEM209 Missense_Mutation p.M362I 0.18 deleterious(0.01) benign(0.03) TCGA-IR-A3LA-01 7 129856149 129856149 C T SSMEM1 Nonsense_Mutation p.Q192* 0.65 TCGA-IR-A3LA-01 7 131155656 131155656 G T MKLN1 Missense_Mutation p.D662Y 0.51 deleterious(0.01) benign(0.359) TCGA-IR-A3LA-01 7 131853272 131853272 G A PLXNA4 Silent p.I1359I 0.27 TCGA-IR-A3LA-01 7 136700266 136700266 G C CHRM2 Missense_Mutation p.K218N 0.56 deleterious(0.01) benign(0.159) TCGA-IR-A3LA-01 7 139818917 139818917 C G KDM7A Silent p.L414L 0.45 TCGA-IR-A3LA-01 7 141490515 141490515 G A TAS2R5 Silent p.L118L 0.40 TCGA-IR-A3LA-01 7 141727450 141727450 G C MGAM Missense_Mutation p.G379A 0.25 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 7 141895964 141895964 G C RP11-1220K2.2 Missense_Mutation p.E1453Q 0.55 benign(0.028) TCGA-IR-A3LA-01 7 141898466 141898466 G C RP11-1220K2.2 Missense_Mutation p.D1659H 0.30 benign(0.178) TCGA-IR-A3LA-01 7 142168472 142168472 G A TRBV5-4 Missense_Mutation p.S84L 0.30 deleterious(0.01) benign(0.333) TCGA-IR-A3LA-01 7 142658523 142658523 C T KEL Silent p.L49L 0.34 TCGA-IR-A3LA-01 7 142965181 142965181 C T GSTK1 Intron 0.45 TCGA-IR-A3LA-01 7 143080071 143080071 C T ZYX Nonsense_Mutation p.Q227* 0.44 TCGA-IR-A3LA-01 7 143453558 143453558 G C CTAGE6 Silent p.L398L 0.47 TCGA-IR-A3LA-01 7 148506428 148506428 G A EZH2 Missense_Mutation p.S695L 0.30 deleterious(0.05) possibly_damaging(0.837) TCGA-IR-A3LA-01 7 149523307 149523307 C T SSPO RNA 0.43 TCGA-IR-A3LA-01 7 150931055 150931055 G C CHPF2 5'UTR 0.60 TCGA-IR-A3LA-01 7 1512808 1512808 G A INTS1 Silent p.F1990F 0.36 TCGA-IR-A3LA-01 7 151927054 151927054 C A KMT2C Missense_Mutation p.C977F 0.06 probably_damaging(0.996) TCGA-IR-A3LA-01 7 1522299 1522299 C T INTS1 Missense_Mutation p.E1196K 0.53 tolerated(0.2) benign(0.002) TCGA-IR-A3LA-01 7 157060420 157060420 G C UBE3C Missense_Mutation p.E1075Q 0.23 tolerated(0.49) possibly_damaging(0.456) TCGA-IR-A3LA-01 7 158526571 158526571 C T ESYT2 3'UTR 0.53 TCGA-IR-A3LA-01 7 23826166 23826166 G A STK31 Missense_Mutation p.E772K 0.39 tolerated(0.09) benign(0.011) TCGA-IR-A3LA-01 7 24331381 24331381 C T NPY 3'UTR 0.43 TCGA-IR-A3LA-01 7 28864496 28864496 C T CREB5 3'UTR 0.36 TCGA-IR-A3LA-01 7 31132290 31132290 C T ADCYAP1R1 Silent p.V329V 0.29 TCGA-IR-A3LA-01 7 31917616 31917616 C T PDE1C Silent p.L213L 0.52 TCGA-IR-A3LA-01 7 33296998 33296998 C G BBS9 Missense_Mutation p.S198C 0.42 deleterious(0.03) probably_damaging(0.993) TCGA-IR-A3LA-01 7 36616224 36616224 C G AOAH Missense_Mutation p.R326T 0.13 deleterious(0) probably_damaging(0.976) TCGA-IR-A3LA-01 7 38725348 38725348 C T FAM183B Silent p.Q86Q 0.56 TCGA-IR-A3LA-01 7 38860835 38860835 C G VPS41 Missense_Mutation p.E118Q 0.45 deleterious(0.03) benign(0.024) TCGA-IR-A3LA-01 7 40038973 40038973 C T CDK13 Missense_Mutation p.R686C 0.31 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LA-01 7 43908607 43908607 G A URGCP-MRPS24 Missense_Mutation p.A104V 0.43 unknown(0) TCGA-IR-A3LA-01 7 43916664 43916664 G A URGCP Silent p.L800L 0.41 TCGA-IR-A3LA-01 7 43918600 43918600 C T URGCP Silent p.E154E 0.51 TCGA-IR-A3LA-01 7 44112891 44112891 C T POLM Silent p.%3D 0.55 TCGA-IR-A3LA-01 7 44113028 44113028 C T POLM Intron 0.55 TCGA-IR-A3LA-01 7 44190560 44190560 C T GCK Missense_Mutation p.D161N 0.43 deleterious(0.04) possibly_damaging(0.818) TCGA-IR-A3LA-01 7 44613549 44613549 G A DDX56 5'UTR 0.67 TCGA-IR-A3LA-01 7 45104163 45104163 C T CCM2 Silent p.I151I 0.49 TCGA-IR-A3LA-01 7 48494709 48494709 G A ABCA13 Missense_Mutation p.R4214Q 0.36 benign(0.003) TCGA-IR-A3LA-01 7 48511183 48511183 C T ABCA13 Missense_Mutation p.S4321L 0.42 benign(0.143) TCGA-IR-A3LA-01 7 55231442 55231442 G C EGFR Missense_Mutation p.V550L 0.23 tolerated(0.25) benign(0.002) TCGA-IR-A3LA-01 7 64526697 64526697 G A SNORA22 3'Flank 0.49 TCGA-IR-A3LA-01 7 66406858 66406858 C T TMEM248 Silent p.F2F 0.64 TCGA-IR-A3LA-01 7 6730895 6730895 G C ZNF12 Missense_Mutation p.Q560E 0.47 tolerated(0.32) probably_damaging(0.996) TCGA-IR-A3LA-01 7 6731026 6731026 G C ZNF12 Nonsense_Mutation p.S516* 0.54 TCGA-IR-A3LA-01 7 6731056 6731056 G C ZNF12 Nonsense_Mutation p.S506* 0.54 TCGA-IR-A3LA-01 7 6732156 6732156 G C ZNF12 Silent p.L139L 0.54 TCGA-IR-A3LA-01 7 75145447 75145447 C G Y_RNA 5'Flank 0.39 TCGA-IR-A3LA-01 7 75621563 75621563 G C STYXL1 3'Flank 0.45 TCGA-IR-A3LA-01 7 75634707 75634707 G C STYXL1 Missense_Mutation p.Q157E 0.43 tolerated(0.15) benign(0.009) TCGA-IR-A3LA-01 7 76019544 76019544 G A SRCRB4D Silent p.L520L 0.42 TCGA-IR-A3LA-01 7 82072830 82072830 G A CACNA2D1 5'UTR 0.50 TCGA-IR-A3LA-01 7 82544421 82544421 C G PCLO Missense_Mutation p.R4294T 0.36 unknown(0) TCGA-IR-A3LA-01 7 87133740 87133740 G C ABCB1 Missense_Mutation p.A1221G 0.54 deleterious(0) probably_damaging(0.969) TCGA-IR-A3LA-01 7 88962775 88962775 C T ZNF804B Missense_Mutation p.S160L 0.50 deleterious(0.02) benign(0.334) TCGA-IR-A3LA-01 7 90896747 90896747 C G FZD1 3'UTR 0.32 TCGA-IR-A3LA-01 7 90897838 90897838 C G FZD1 3'UTR 0.33 TCGA-IR-A3LA-01 7 92206487 92206487 C T FAM133B Missense_Mutation p.R132K 0.54 tolerated_low_confidence(0.66) unknown(0) TCGA-IR-A3LA-01 7 92734909 92734909 C T SAMD9 Missense_Mutation p.E168K 0.53 tolerated(0.75) benign(0.003) TCGA-IR-A3LA-01 7 94540329 94540329 G T PPP1R9A Nonsense_Mutation p.E302* 0.41 TCGA-IR-A3LA-01 7 97617814 97617814 G C OCM2 Silent p.L36L 0.46 TCGA-IR-A3LA-01 7 97860411 97860411 G C TECPR1 Missense_Mutation p.S715C 0.43 tolerated(0.23) benign(0.014) TCGA-IR-A3LA-01 7 97862862 97862862 G C TECPR1 Missense_Mutation p.L515V 0.35 tolerated(0.61) benign(0.011) TCGA-IR-A3LA-01 7 98951620 98951620 G C ARPC1A Missense_Mutation p.E197Q 0.39 deleterious(0) possibly_damaging(0.53) TCGA-IR-A3LA-01 7 99001128 99001128 C T PDAP1 Missense_Mutation p.E36K 0.33 tolerated(0.42) benign(0.011) TCGA-IR-A3LA-01 7 99129642 99129642 C T ZKSCAN5 Nonsense_Mutation p.Q764* 0.39 TCGA-IR-A3LA-01 7 99698925 99698925 G A MCM7 5'UTR 0.36 TCGA-IR-A3LA-01 7 99774886 99774886 G A GPC2 5'UTR 0.26 TCGA-IR-A3LA-01 7 99774928 99774928 G A GPC2 5'UTR 0.24 TCGA-IR-A3LA-01 7 99801641 99801641 C G STAG3 Intron 0.58 TCGA-IR-A3LA-01 7 99997548 99997548 C T PILRA 3'UTR 0.21 TCGA-IR-A3LA-01 8 101734310 101734310 G C PABPC1 5'UTR 0.86 TCGA-IR-A3LA-01 8 105264415 105264415 G C RIMS2 3'Flank 0.10 TCGA-IR-A3LA-01 8 110400737 110400737 G A PKHD1L1 Missense_Mutation p.G194E 0.29 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LA-01 8 113662455 113662455 C T CSMD3 Missense_Mutation p.S1043N 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-IR-A3LA-01 8 117767936 117767936 G A EIF3H Missense_Mutation p.S34L 0.36 tolerated(0.05) benign(0.023) TCGA-IR-A3LA-01 8 124707800 124707800 G A ANXA13 Missense_Mutation p.S179L 0.31 tolerated(0.07) benign(0.118) TCGA-IR-A3LA-01 8 127569296 127569296 G C FAM84B Silent p.L113L 0.19 TCGA-IR-A3LA-01 8 132968055 132968055 G C EFR3A Missense_Mutation p.E227Q 0.30 tolerated(0.08) benign(0.138) TCGA-IR-A3LA-01 8 134472011 134472011 C T ST3GAL1 Missense_Mutation p.R340K 0.55 probably_damaging(0.993) TCGA-IR-A3LA-01 8 141900803 141900803 G A PTK2 Missense_Mutation p.H12Y 0.66 tolerated_low_confidence(0.08) possibly_damaging(0.897) TCGA-IR-A3LA-01 8 143961221 143961221 G T CYP11B1 Silent p.L3L 0.82 TCGA-IR-A3LA-01 8 144671934 144671934 G T EEF1D Silent p.L106L 0.80 TCGA-IR-A3LA-01 8 144941826 144941826 C T EPPK1 Missense_Mutation p.D1866N 0.50 benign(0.018) TCGA-IR-A3LA-01 8 145626076 145626076 C G CPSF1 Missense_Mutation p.Q225H 0.27 deleterious(0.02) probably_damaging(0.957) TCGA-IR-A3LA-01 8 145948354 145948354 G T ZNF251 Missense_Mutation p.H231N 0.34 deleterious(0) benign(0.132) TCGA-IR-A3LA-01 8 145948737 145948737 G C ZNF251 Missense_Mutation p.S103C 0.31 deleterious(0.04) possibly_damaging(0.7) TCGA-IR-A3LA-01 8 146068094 146068094 C T ZNF7 Silent p.F534F 0.43 TCGA-IR-A3LA-01 8 146107136 146107136 C T ZNF250 Missense_Mutation p.E483K 0.43 deleterious(0.01) benign(0.211) TCGA-IR-A3LA-01 8 24321394 24321394 G A ADAM7 Splice_Site p.X78_splice 0.67 TCGA-IR-A3LA-01 8 25718727 25718727 G A EBF2 Nonsense_Mutation p.R394* 0.86 TCGA-IR-A3LA-01 8 2796028 2796028 G C CSMD1 3'Flank 0.92 TCGA-IR-A3LA-01 8 35608103 35608103 G A UNC5D Missense_Mutation p.V647M 0.43 deleterious(0) possibly_damaging(0.885) TCGA-IR-A3LA-01 8 37704661 37704661 G T BRF2 Missense_Mutation p.L83M 0.49 deleterious(0) possibly_damaging(0.881) TCGA-IR-A3LA-01 8 39380346 39380346 C T ADAM3A RNA 0.51 TCGA-IR-A3LA-01 8 40011008 40011008 C T C8orf4 5'UTR 0.40 TCGA-IR-A3LA-01 8 42585773 42585773 G A CHRNB3 Missense_Mutation p.D96N 0.43 deleterious(0.02) benign(0.009) TCGA-IR-A3LA-01 8 48794620 48794620 G A PRKDC Silent p.F1604F 0.39 TCGA-IR-A3LA-01 8 53536149 53536149 C G RB1CC1 3'UTR 0.50 TCGA-IR-A3LA-01 8 67428140 67428140 C G C8orf46 Silent p.L151L 0.52 TCGA-IR-A3LA-01 8 71520420 71520420 C G TRAM1 Missense_Mutation p.K5N 0.34 deleterious(0) possibly_damaging(0.732) TCGA-IR-A3LA-01 8 81553567 81553567 C G ZNF704 3'UTR 0.33 TCGA-IR-A3LA-01 8 92983038 92983038 C T RUNX1T1 Missense_Mutation p.E474K 0.73 deleterious(0.01) probably_damaging(0.957) TCGA-IR-A3LA-01 8 97892112 97892112 C T CPQ Missense_Mutation p.S243L 0.21 tolerated(0.67) benign(0.002) TCGA-IR-A3LA-01 9 103109610 103109610 G C TEX10 Missense_Mutation p.Q87E 0.40 tolerated(0.73) benign(0.09) TCGA-IR-A3LA-01 9 104170480 104170480 G C ZNF189 Missense_Mutation p.E144Q 0.35 tolerated(0.33) possibly_damaging(0.528) TCGA-IR-A3LA-01 9 104448997 104448997 C T GRIN3A Silent p.L395L 0.44 TCGA-IR-A3LA-01 9 111625727 111625727 G A ACTL7A Silent p.Q375Q 0.36 TCGA-IR-A3LA-01 9 112900512 112900512 C T PALM2-AKAP2 Silent p.P896P 0.38 TCGA-IR-A3LA-01 9 114986244 114986244 G C PTBP3 Missense_Mutation p.L522V 0.41 deleterious(0) possibly_damaging(0.799) TCGA-IR-A3LA-01 9 116379 116379 C T FOXD4 3'UTR 0.12 TCGA-IR-A3LA-01 9 117165054 117165054 C G DFNB31 Missense_Mutation p.E902Q 0.54 deleterious(0) probably_damaging(0.979) TCGA-IR-A3LA-01 9 117165217 117165217 C T DFNB31 Splice_Site p.X848_splice 0.36 TCGA-IR-A3LA-01 9 117165578 117165578 C T DFNB31 Silent p.K820K 0.33 TCGA-IR-A3LA-01 9 117166173 117166173 C T DFNB31 Intron 0.54 TCGA-IR-A3LA-01 9 117240927 117240927 G A DFNB31 Missense_Mutation p.S248L 0.44 tolerated(0.14) benign(0.007) TCGA-IR-A3LA-01 9 119163187 119163187 C G PAPPA 3'UTR 0.39 TCGA-IR-A3LA-01 9 123253644 123253644 G C CDK5RAP2 Missense_Mutation p.Q475E 0.36 deleterious(0.01) benign(0.042) TCGA-IR-A3LA-01 9 123363093 123363093 G C MEGF9 3'UTR 0.52 TCGA-IR-A3LA-01 9 123370233 123370233 C T MEGF9 Silent p.P381P 0.31 TCGA-IR-A3LA-01 9 123914769 123914769 G A CNTRL Missense_Mutation p.E1324K 0.39 probably_damaging(0.999) TCGA-IR-A3LA-01 9 125054025 125054025 C G MRRF Intron 0.40 TCGA-IR-A3LA-01 9 125639816 125639816 C G RC3H2 Missense_Mutation p.R420P 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-IR-A3LA-01 9 12775994 12775994 G C LURAP1L Missense_Mutation p.E94Q 0.41 tolerated(0.19) benign(0.012) TCGA-IR-A3LA-01 9 129599754 129599754 G A ZBTB43 3'UTR 0.37 TCGA-IR-A3LA-01 9 130268910 130268910 G A FAM129B 3'UTR 0.40 TCGA-IR-A3LA-01 9 130698034 130698034 C A DPM2 Silent p.L74L 0.37 TCGA-IR-A3LA-01 9 130825812 130825812 G A NAIF1 Silent p.I293I 0.29 TCGA-IR-A3LA-01 9 130925201 130925201 C G C9orf16 Intron 0.49 TCGA-IR-A3LA-01 9 131123113 131123113 G A SLC27A4 3'UTR 0.47 TCGA-IR-A3LA-01 9 131196417 131196417 G A CERCAM Missense_Mutation p.E414K 0.35 deleterious(0) probably_damaging(0.952) TCGA-IR-A3LA-01 9 13126745 13126745 G A MPDZ Silent p.I1497I 0.32 TCGA-IR-A3LA-01 9 131371398 131371398 C G SPTAN1 Intron 0.50 TCGA-IR-A3LA-01 9 13140004 13140004 C T MPDZ Missense_Mutation p.E1329K 0.24 tolerated(0.07) possibly_damaging(0.637) TCGA-IR-A3LA-01 9 131591057 131591057 C G C9orf114 Missense_Mutation p.K55N 0.35 tolerated(0.22) benign(0.021) TCGA-IR-A3LA-01 9 132510990 132510990 C G PTGES Silent p.L51L 0.52 TCGA-IR-A3LA-01 9 134459713 134459713 C T RAPGEF1 Silent p.Q965Q 0.40 TCGA-IR-A3LA-01 9 135703409 135703409 G C AK8 Missense_Mutation p.Q183E 0.38 tolerated(0.41) benign(0.124) TCGA-IR-A3LA-01 9 135797308 135797308 G C TSC1 Silent p.L187L 0.24 TCGA-IR-A3LA-01 9 136081736 136081736 G C OBP2B Silent p.L152L 0.44 TCGA-IR-A3LA-01 9 137734854 137734854 G A COL5A1 3'UTR 0.56 TCGA-IR-A3LA-01 9 139286555 139286555 C G SNAPC4 Missense_Mutation p.E272Q 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-IR-A3LA-01 9 139287211 139287211 C T SNAPC4 Silent p.Q217Q 0.37 TCGA-IR-A3LA-01 9 139357926 139357926 T C SEC16A Missense_Mutation p.R1546G 0.38 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 9 139368804 139368804 G A SEC16A Silent p.P1088P 0.50 TCGA-IR-A3LA-01 9 139369984 139369984 G A SEC16A Missense_Mutation p.P695L 0.39 deleterious(0.04) benign(0.019) TCGA-IR-A3LA-01 9 139686777 139686777 G T TMEM141 Nonsense_Mutation p.E94* 0.50 TCGA-IR-A3LA-01 9 139757835 139757835 C T EDF1 Missense_Mutation p.E66K 0.40 deleterious(0) probably_damaging(0.955) TCGA-IR-A3LA-01 9 140099705 140099705 G A TMEM203 Silent p.F54F 0.35 TCGA-IR-A3LA-01 9 14313626 14313626 G A NFIB 5'UTR 0.30 TCGA-IR-A3LA-01 9 14868848 14868848 G A FREM1 Missense_Mutation p.S43L 0.42 tolerated(0.06) benign(0.013) TCGA-IR-A3LA-01 9 19300283 19300283 C T DENND4C Missense_Mutation p.S422F 0.41 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 9 19336796 19336796 C T DENND4C Intron 0.46 TCGA-IR-A3LA-01 9 20862593 20862593 C G FOCAD Missense_Mutation p.S646C 0.44 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 9 2123739 2123739 G C SMARCA2 Silent p.R1261R 0.44 TCGA-IR-A3LA-01 9 21482159 21482159 G A IFNE 5'UTR 0.35 TCGA-IR-A3LA-01 9 304664 304664 T A DOCK8 Missense_Mutation p.F163Y 0.39 tolerated(0.18) probably_damaging(0.992) TCGA-IR-A3LA-01 9 33385029 33385029 C A AQP7 Nonsense_Mutation p.E335* 0.34 TCGA-IR-A3LA-01 9 34249786 34249786 C T UBAP1 Missense_Mutation p.P429S 0.48 tolerated(0.28) benign(0.221) TCGA-IR-A3LA-01 9 34256848 34256848 C G KIF24 Missense_Mutation p.W919C 0.34 deleterious(0.02) benign(0.172) TCGA-IR-A3LA-01 9 34997162 34997162 G A DNAJB5 Missense_Mutation p.R432Q 0.42 deleterious(0) possibly_damaging(0.877) TCGA-IR-A3LA-01 9 35662192 35662192 G A ARHGEF39 Silent p.L326L 0.61 TCGA-IR-A3LA-01 9 35683062 35683062 G C TPM2 Intron 0.43 TCGA-IR-A3LA-01 9 37537857 37537857 C T FBXO10 Silent p.V223V 0.52 TCGA-IR-A3LA-01 9 3828373 3828373 C T GLIS3 Missense_Mutation p.G898R 0.39 deleterious(0) probably_damaging(0.92) TCGA-IR-A3LA-01 9 45728101 45728101 G A FAM27A 3'UTR 0.16 TCGA-IR-A3LA-01 9 71831295 71831295 G C TJP2 Missense_Mutation p.R83T 0.41 deleterious(0) probably_damaging(0.956) TCGA-IR-A3LA-01 9 71855018 71855018 G C TJP2 Missense_Mutation p.D872H 0.35 deleterious(0.01) probably_damaging(0.979) TCGA-IR-A3LA-01 9 72658989 72658989 C G MAMDC2 5'UTR 0.33 TCGA-IR-A3LA-01 9 72787636 72787636 C T MAMDC2 Intron 0.41 TCGA-IR-A3LA-01 9 79932560 79932560 G A VPS13A Silent p.Q1634Q 0.45 TCGA-IR-A3LA-01 9 82323087 82323087 G A TLE4 Missense_Mutation p.D331N 0.36 tolerated(0.05) possibly_damaging(0.58) TCGA-IR-A3LA-01 9 88633650 88633650 C G NAA35 Missense_Mutation p.Q651E 0.33 tolerated(1) benign(0.012) TCGA-IR-A3LA-01 9 90589419 90589419 C G CDK20 5'UTR 0.53 TCGA-IR-A3LA-01 9 94495547 94495547 C T ROR2 Missense_Mutation p.R265H 0.13 tolerated(0.12) benign(0.035) TCGA-IR-A3LA-01 9 96009920 96009920 C G WNK2 Missense_Mutation p.I546M 0.49 unknown(0) TCGA-IR-A3LA-01 9 96715209 96715209 C T BARX1 Missense_Mutation p.E162K 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-IR-A3LA-01 9 97369154 97369154 G A FBP1 Silent p.Y216Y 0.38 TCGA-IR-A3LA-01 9 97522144 97522144 G C C9orf3 Missense_Mutation p.V27L 0.33 tolerated(0.06) benign(0.099) TCGA-IR-A3LA-01 X 100652821 100652821 C T GLA Silent p.Q422Q 0.73 TCGA-IR-A3LA-01 X 100911348 100911348 G C ARMCX2 Silent p.L409L 0.66 TCGA-IR-A3LA-01 X 101096477 101096477 C T NXF5 Silent p.L98L 0.21 TCGA-IR-A3LA-01 X 101818872 101818872 C G NXF4 RNA 0.75 TCGA-IR-A3LA-01 X 101857527 101857527 G A ARMCX5 Missense_Mutation p.R153K 0.51 tolerated(0.82) benign(0.001) TCGA-IR-A3LA-01 X 101912304 101912304 G C GPRASP1 Missense_Mutation p.E1155Q 0.60 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 X 102530265 102530265 G A TCEAL5 5'UTR 0.68 TCGA-IR-A3LA-01 X 102941730 102941730 G C MORF4L2 5'Flank 1.00 TCGA-IR-A3LA-01 X 104463647 104463647 C G TEX13A Nonstop_Mutation p.*410Sext*? 0.21 TCGA-IR-A3LA-01 X 106093419 106093419 G A TBC1D8B Missense_Mutation p.D668N 0.69 deleterious(0) probably_damaging(1) TCGA-IR-A3LA-01 X 110970137 110970137 C T ALG13 Silent p.L610L 0.24 TCGA-IR-A3LA-01 X 111698092 111698092 G T ZCCHC16 Missense_Mutation p.A46S 0.60 tolerated(0.29) benign(0.027) TCGA-IR-A3LA-01 X 115567828 115567828 C G SLC6A14 5'UTR 0.65 TCGA-IR-A3LA-01 X 11776774 11776774 G A MSL3 Intron 0.41 TCGA-IR-A3LA-01 X 118717597 118717597 G A UBE2A 3'UTR 0.75 TCGA-IR-A3LA-01 X 118925603 118925603 G A RPL39 5'UTR 0.26 TCGA-IR-A3LA-01 X 119658756 119658756 C G CUL4B 3'Flank 0.50 TCGA-IR-A3LA-01 X 119738001 119738001 C T MCTS1 5'Flank 0.26 TCGA-IR-A3LA-01 X 12738941 12738941 G A FRMPD4 3'UTR 0.50 TCGA-IR-A3LA-01 X 128947660 128947660 G A ZDHHC9 Missense_Mutation p.P223S 0.22 deleterious(0.02) possibly_damaging(0.491) TCGA-IR-A3LA-01 X 132091225 132091225 G A HS6ST2 Silent p.F186F 0.23 TCGA-IR-A3LA-01 X 133904183 133904183 G A FAM122B 3'UTR 0.25 TCGA-IR-A3LA-01 X 134856890 134856890 G A CT45A1 3'UTR 0.15 TCGA-IR-A3LA-01 X 135391004 135391004 C T GPR112 Missense_Mutation p.S23L 0.61 deleterious(0) benign(0.115) TCGA-IR-A3LA-01 X 139038520 139038520 G C CXorf66 Silent p.V207V 0.18 TCGA-IR-A3LA-01 X 142717613 142717613 C G SLITRK4 Missense_Mutation p.E438Q 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-IR-A3LA-01 X 148076660 148076660 C G AFF2 3'UTR 0.20 TCGA-IR-A3LA-01 X 149013328 149013328 G T MAGEA8 Silent p.G94G 0.77 TCGA-IR-A3LA-01 X 149680410 149680410 G C MAMLD1 Missense_Mutation p.Q688H 0.76 tolerated(0.06) possibly_damaging(0.693) TCGA-IR-A3LA-01 X 152615566 152615566 C A ZNF275 3'UTR 0.28 TCGA-IR-A3LA-01 X 153059929 153059929 G C SSR4 5'UTR 0.27 TCGA-IR-A3LA-01 X 153133896 153133896 G A L1CAM Nonsense_Mutation p.Q522* 0.62 TCGA-IR-A3LA-01 X 154115607 154115607 C G F8A1 Missense_Mutation p.L320V 0.13 deleterious(0.01) possibly_damaging(0.567) TCGA-IR-A3LA-01 X 154175986 154175986 C G F8 Silent p.S700S 0.20 TCGA-IR-A3LA-01 X 155011071 155011071 G C SPRY3 3'UTR 0.17 TCGA-IR-A3LA-01 X 16870688 16870688 C T RBBP7 Missense_Mutation p.D361N 0.46 deleterious(0.03) possibly_damaging(0.63) TCGA-IR-A3LA-01 X 17710460 17710460 C T NHS Missense_Mutation p.R242W 0.52 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LA-01 X 22095591 22095591 C T PHEX Intron 0.45 TCGA-IR-A3LA-01 X 24229099 24229099 C T ZFX Missense_Mutation p.S675L 0.38 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LA-01 X 24231777 24231777 C G ZFX 3'UTR 0.39 TCGA-IR-A3LA-01 X 34962239 34962239 G A FAM47B Missense_Mutation p.G431R 0.54 tolerated(0.58) benign(0.035) TCGA-IR-A3LA-01 X 37028026 37028026 T C FAM47C Missense_Mutation p.S515P 0.30 tolerated_low_confidence(1) benign(0) TCGA-IR-A3LA-01 X 38146372 38146372 G C RPGR Nonsense_Mutation p.S627* 0.47 TCGA-IR-A3LA-01 X 44101443 44101443 C G EFHC2 Missense_Mutation p.D402H 0.47 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LA-01 X 44101485 44101485 C G EFHC2 Missense_Mutation p.E388Q 0.45 tolerated(0.06) benign(0.146) TCGA-IR-A3LA-01 X 44971168 44971168 G C KDM6A 3'UTR 0.46 TCGA-IR-A3LA-01 X 48755725 48755725 G T PQBP1 5'UTR 0.56 TCGA-IR-A3LA-01 X 48819823 48819823 G A KCND1 3'UTR 0.42 TCGA-IR-A3LA-01 X 48830616 48830616 C T GRIPAP1 Missense_Mutation p.E839K 0.35 benign(0.022) TCGA-IR-A3LA-01 X 48891275 48891275 C G TFE3 Missense_Mutation p.L342F 0.51 tolerated(0.13) possibly_damaging(0.587) TCGA-IR-A3LA-01 X 48932479 48932479 C T WDR45 Missense_Mutation p.D357N 0.40 tolerated(0.08) benign(0.347) TCGA-IR-A3LA-01 X 49054176 49054176 G A SYP Silent p.F75F 0.46 TCGA-IR-A3LA-01 X 49142903 49142903 C G PPP1R3F Missense_Mutation p.S584C 0.56 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-IR-A3LA-01 X 49957243 49957243 G C AKAP4 Silent p.L707L 0.46 TCGA-IR-A3LA-01 X 51075857 51075857 G A NUDT10 Missense_Mutation p.E14K 0.33 deleterious(0.03) benign(0.309) TCGA-IR-A3LA-01 X 54470860 54470860 G A TSR2 Silent p.T151T 0.50 TCGA-IR-A3LA-01 X 55102509 55102509 C T PAGE2B Missense_Mutation p.S12L 0.39 tolerated(0.11) benign(0.014) TCGA-IR-A3LA-01 X 57162266 57162266 C T SPIN2A Silent p.V255V 0.45 TCGA-IR-A3LA-01 X 68428293 68428293 C G LINC00269 RNA 0.60 TCGA-IR-A3LA-01 X 68751766 68751766 G A FAM155B 3'UTR 0.27 TCGA-IR-A3LA-01 X 69264293 69264293 G A AWAT2 Silent p.V35V 0.62 TCGA-IR-A3LA-01 X 69368661 69368661 C G IGBP1 Missense_Mutation p.F243L 0.61 deleterious(0.01) possibly_damaging(0.533) TCGA-IR-A3LA-01 X 71359588 71359588 G A NHSL2 Silent p.L730L 0.62 TCGA-IR-A3LA-01 X 71800867 71800867 G T PHKA1 Silent p.I1219I 0.48 TCGA-IR-A3LA-01 X 73043579 73043579 C A XIST RNA 0.30 TCGA-IR-A3LA-01 X 73752488 73752488 G C SLC16A2 3'UTR 0.31 TCGA-IR-A3LA-01 X 73956498 73956498 G A KIAA2022 3'UTR 0.38 TCGA-IR-A3LA-01 X 74670634 74670634 G A ZDHHC15 Intron 0.65 TCGA-IR-A3LA-01 X 74725672 74725672 C T ZDHHC15 Silent p.L49L 0.55 TCGA-IR-A3LA-01 X 76709656 76709656 G A FGF16 Missense_Mutation p.E4K 0.64 benign(0.333) TCGA-IR-A3LA-01 X 76891545 76891545 C G ATRX Silent p.V1520V 0.57 TCGA-IR-A3LA-01 X 76938673 76938673 G A ATRX Missense_Mutation p.S692L 0.55 benign(0.001) TCGA-IR-A3LA-01 X 77150956 77150956 G A MAGT1 Silent p.L16L 0.54 TCGA-IR-A3LA-01 X 7811142 7811142 C T VCX 5'UTR 0.80 TCGA-IR-A3LA-01 X 83588783 83588783 G C HDX Missense_Mutation p.S603C 0.40 deleterious(0.02) probably_damaging(0.97) TCGA-IR-A3LA-01 X 86067873 86067873 C G DACH2 Missense_Mutation p.Q419E 0.24 tolerated(0.65) benign(0.076) TCGA-IR-A3LA-01 X 92965019 92965019 G A FAM133A Missense_Mutation p.E201K 0.20 tolerated_low_confidence(0.79) unknown(0) TCGA-IR-A3LA-01 X 9914991 9914991 G A SHROOM2 3'UTR 0.56 TCGA-IR-A3LA-01 X 99597021 99597021 C T PCDH19 Missense_Mutation p.E910K 0.19 tolerated(0.06) possibly_damaging(0.857) TCGA-IR-A3LB-01 10 32311953 32311953 T A KIF5B Silent p.G579G 0.41 TCGA-IR-A3LB-01 10 74093379 74093379 G A DNAJB12 3'UTR 0.19 TCGA-IR-A3LB-01 11 46418196 46418196 C G AMBRA1 3'UTR 0.35 TCGA-IR-A3LB-01 11 62201221 62201221 G T AHNAK 3'UTR 0.35 TCGA-IR-A3LB-01 11 64367308 64367308 G C SLC22A12 Missense_Mutation p.A411P 0.39 tolerated(0.17) possibly_damaging(0.814) TCGA-IR-A3LB-01 11 64627702 64627702 C G EHD1 Silent p.V203V 0.43 TCGA-IR-A3LB-01 11 65349326 65349326 G A EHBP1L1 Missense_Mutation p.E395K 0.60 tolerated(0.16) benign(0.122) TCGA-IR-A3LB-01 11 65349660 65349660 G C EHBP1L1 Missense_Mutation p.R506T 0.40 deleterious(0.01) possibly_damaging(0.451) TCGA-IR-A3LB-01 11 9088340 9088340 C T SCUBE2 Missense_Mutation p.G222S 0.42 deleterious(0) probably_damaging(1) TCGA-IR-A3LB-01 12 100048924 100048924 G A ANKS1B Missense_Mutation p.T398M 0.43 tolerated_low_confidence(0.17) possibly_damaging(0.614) TCGA-IR-A3LB-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.79 deleterious(0.04) probably_damaging(0.993) TCGA-IR-A3LB-01 15 28771115 28771115 C T GOLGA8G Missense_Mutation p.V397I 0.36 tolerated(0.07) benign(0.024) TCGA-IR-A3LB-01 15 43700219 43700219 G - TP53BP1 Frame_Shift_Del p.L1890Wfs*9 0.38 TCGA-IR-A3LB-01 15 68582295 68582295 T G FEM1B Missense_Mutation p.I200R 0.39 deleterious(0.01) benign(0.266) TCGA-IR-A3LB-01 15 73044861 73044861 C A ADPGK Nonsense_Mutation p.E438* 0.32 TCGA-IR-A3LB-01 16 70726824 70726824 C G VAC14 Missense_Mutation p.A696P 0.47 deleterious(0.04) probably_damaging(0.959) TCGA-IR-A3LB-01 17 27977704 27977704 C T SSH2 Nonsense_Mutation p.W371* 0.30 TCGA-IR-A3LB-01 17 3627380 3627380 G A GSG2 Missense_Mutation p.D51N 0.27 tolerated_low_confidence(0.5) benign(0.058) TCGA-IR-A3LB-01 17 65989227 65989227 G A C17orf58 Silent p.F12F 0.40 TCGA-IR-A3LB-01 17 72308204 72308204 G A DNAI2 Silent p.L519L 0.30 TCGA-IR-A3LB-01 17 73621254 73621254 G A RECQL5 3'Flank 0.25 TCGA-IR-A3LB-01 18 60645815 60645815 C T PHLPP1 Silent p.S1435S 0.24 TCGA-IR-A3LB-01 19 39224992 39224992 G A CAPN12 Silent p.L594L 0.39 TCGA-IR-A3LB-01 19 39293021 39293021 C T LGALS4 Silent p.L198L 0.23 TCGA-IR-A3LB-01 19 50364613 50364613 G A PNKP Silent p.F486F 0.42 TCGA-IR-A3LB-01 19 59027764 59027764 G A ZBTB45 Missense_Mutation p.S426L 0.34 deleterious(0) possibly_damaging(0.449) TCGA-IR-A3LB-01 1 14925500 14925500 G A KAZN Missense_Mutation p.E3K 0.44 deleterious(0.01) possibly_damaging(0.636) TCGA-IR-A3LB-01 1 150785761 150785761 C T ARNT Missense_Mutation p.V723M 0.37 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-IR-A3LB-01 1 237811805 237811805 G T RYR2 Missense_Mutation p.M2468I 0.36 possibly_damaging(0.718) TCGA-IR-A3LB-01 1 38265771 38265771 C T MANEAL Missense_Mutation p.R424C 0.56 tolerated(0.17) benign(0.271) TCGA-IR-A3LB-01 1 6228322 6228323 - CA CHD5 Frame_Shift_Ins p.G32Vfs*15 0.31 TCGA-IR-A3LB-01 20 43940943 43940943 G A RBPJL Missense_Mutation p.R176H 0.33 deleterious(0.02) possibly_damaging(0.735) TCGA-IR-A3LB-01 22 41831822 41831822 C T TOB2 3'UTR 0.78 TCGA-IR-A3LB-01 2 1271336 1271336 G A SNTG2 Missense_Mutation p.R426K 0.32 tolerated(0.2) benign(0.255) TCGA-IR-A3LB-01 2 128619898 128619898 G C AMMECR1L 3'UTR 0.24 TCGA-IR-A3LB-01 2 131976013 131976013 C T POTEE Missense_Mutation p.S13F 0.38 deleterious_low_confidence(0) benign(0) TCGA-IR-A3LB-01 2 198508906 198508906 G A RFTN2 Silent p.D138D 0.14 TCGA-IR-A3LB-01 2 220290748 220290748 C T DES 3'UTR 0.40 TCGA-IR-A3LB-01 2 44175557 44175557 C T LRPPRC Silent p.E612E 0.30 TCGA-IR-A3LB-01 2 44175581 44175581 C G LRPPRC Missense_Mutation p.L604F 0.28 deleterious(0.04) probably_damaging(0.994) TCGA-IR-A3LB-01 3 107764455 107764455 G A CD47 3'Flank 0.52 TCGA-IR-A3LB-01 3 196042995 196042995 G A TCTEX1D2 Missense_Mutation p.S74L 0.22 deleterious(0) probably_damaging(0.94) TCGA-IR-A3LB-01 3 196434423 196434423 C T CEP19 Silent p.%3D 0.42 TCGA-IR-A3LB-01 3 196434681 196434681 C G CEP19 Missense_Mutation p.R82P 0.28 deleterious(0.01) possibly_damaging(0.871) TCGA-IR-A3LB-01 3 196754776 196754776 C T MFI2 Missense_Mutation p.G19S 0.27 tolerated(0.69) benign(0.007) TCGA-IR-A3LB-01 3 62357289 62357289 G T FEZF2 Silent p.A302A 0.31 TCGA-IR-A3LB-01 4 126369744 126369744 G A FAT4 Missense_Mutation p.A2525T 0.41 benign(0.045) TCGA-IR-A3LB-01 4 78640154 78640154 G A CNOT6L 3'UTR 0.33 TCGA-IR-A3LB-01 5 121488160 121488160 C T ZNF474 Nonsense_Mutation p.Q159* 0.32 TCGA-IR-A3LB-01 5 140802665 140802665 C T PCDHGA11 Missense_Mutation p.T624M 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IR-A3LB-01 5 142660978 142660978 G A NR3C1 3'UTR 0.50 TCGA-IR-A3LB-01 5 33467719 33467719 A G TARS Missense_Mutation p.N726S 0.48 tolerated(0.06) probably_damaging(0.991) TCGA-IR-A3LB-01 5 78596013 78596013 G A JMY Missense_Mutation p.R522Q 0.46 tolerated(0.36) benign(0.007) TCGA-IR-A3LB-01 6 160240108 160240108 G A PNLDC1 Missense_Mutation p.R452Q 0.21 tolerated(0.22) benign(0.36) TCGA-IR-A3LB-01 6 3152763 3152763 G A BPHL Missense_Mutation p.R277H 0.29 deleterious(0.01) possibly_damaging(0.717) TCGA-IR-A3LB-01 6 46967927 46967927 G C GPR110 3'UTR 0.41 TCGA-IR-A3LB-01 6 46967979 46967979 G C GPR110 Missense_Mutation p.Q905E 0.45 tolerated_low_confidence(0.06) benign(0.105) TCGA-IR-A3LB-01 7 100205756 100205756 C G PCOLCE 3'UTR 0.40 TCGA-IR-A3LB-01 7 158526767 158526767 T A ESYT2 3'UTR 0.23 TCGA-IR-A3LB-01 7 25163111 25163111 C A CYCS 3'UTR 0.27 TCGA-IR-A3LB-01 7 35288353 35288353 G A TBX20 Missense_Mutation p.R161C 0.35 deleterious(0) probably_damaging(1) TCGA-IR-A3LB-01 7 99036745 99036745 G A CPSF4 Missense_Mutation p.D14N 0.21 tolerated(0.06) benign(0.126) TCGA-IR-A3LB-01 8 133981761 133981761 G A TG Missense_Mutation p.M1974I 0.22 tolerated(0.12) benign(0.004) TCGA-IR-A3LB-01 8 97156955 97156955 T G GDF6 Missense_Mutation p.I402L 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LB-01 9 113170065 113170065 G A SVEP1 Silent p.I2605I 0.35 TCGA-IR-A3LB-01 9 119495716 119495716 A T ASTN2 Missense_Mutation p.V777D 0.56 tolerated(0.44) unknown(0) TCGA-IR-A3LB-01 9 131708526 131708526 T C DOLK Missense_Mutation p.I353V 0.24 tolerated(0.2) benign(0.003) TCGA-IR-A3LB-01 9 21863660 21863660 C A MTAP 3'UTR 0.33 TCGA-IR-A3LB-01 X 153944425 153944425 G A GAB3 Silent p.F84F 0.29 TCGA-IR-A3LC-01 10 101166536 101166544 TACCAACGC - GOT1 In_Frame_Del p.R122_Y124del 0.22 TCGA-IR-A3LC-01 10 135015315 135015315 C T KNDC1 Silent p.A1100A 0.32 TCGA-IR-A3LC-01 10 135176272 135176272 G A ECHS1 3'UTR 0.36 TCGA-IR-A3LC-01 10 23481515 23481515 C T PTF1A Missense_Mutation p.S19L 0.33 deleterious_low_confidence(0) benign(0.267) TCGA-IR-A3LC-01 10 486841 486841 G A DIP2C Nonsense_Mutation p.Q122* 0.08 TCGA-IR-A3LC-01 11 64789391 64789391 G A ARL2 3'UTR 0.29 TCGA-IR-A3LC-01 12 63544264 63544264 C T AVPR1A Missense_Mutation p.R118H 0.26 tolerated(0.32) benign(0.015) TCGA-IR-A3LC-01 12 7241450 7241452 GCA - C1R In_Frame_Del p.L299del 0.46 TCGA-IR-A3LC-01 12 96275265 96275265 A T CCDC38 Missense_Mutation p.L330M 0.42 tolerated(0.23) benign(0.411) TCGA-IR-A3LC-01 13 41495643 41495643 A C SUGT1P3 RNA 0.31 TCGA-IR-A3LC-01 14 24538734 24538734 A T LRRC16B 3'UTR 0.56 TCGA-IR-A3LC-01 14 66190982 66190983 - A FUT8 Frame_Shift_Ins p.R403Kfs*8 0.41 TCGA-IR-A3LC-01 14 75266333 75266333 G T YLPM1 Missense_Mutation p.V1445L 0.88 probably_damaging(0.949) TCGA-IR-A3LC-01 14 77951065 77951065 C T ISM2 Silent p.P113P 0.37 TCGA-IR-A3LC-01 15 43816925 43816925 G A MAP1A Missense_Mutation p.G1085D 0.33 probably_damaging(1) TCGA-IR-A3LC-01 15 64015507 64015507 C T HERC1 Missense_Mutation p.E1206K 0.35 possibly_damaging(0.621) TCGA-IR-A3LC-01 16 4164414 4164414 C T ADCY9 Missense_Mutation p.D344N 0.26 tolerated(0.05) probably_damaging(0.996) TCGA-IR-A3LC-01 16 56892472 56892472 C T MIR138-2 RNA 0.39 TCGA-IR-A3LC-01 17 10212865 10212865 G C MYH13 Missense_Mutation p.L1647V 0.42 tolerated(0.22) benign(0.201) TCGA-IR-A3LC-01 17 42400685 42400685 G A SLC25A39 Missense_Mutation p.R38C 0.46 deleterious(0) probably_damaging(0.978) TCGA-IR-A3LC-01 17 45924676 45924676 G A SP6 Missense_Mutation p.P374S 0.55 tolerated_low_confidence(0.18) unknown(0) TCGA-IR-A3LC-01 17 5393446 5393446 G A MIS12 3'UTR 0.32 TCGA-IR-A3LC-01 17 61987643 61987643 C T CSHL1 Missense_Mutation p.R117Q 0.65 deleterious(0) benign(0.189) TCGA-IR-A3LC-01 1 110919773 110919773 C T SLC16A4 Silent p.E347E 0.31 TCGA-IR-A3LC-01 1 118609416 118609416 A G SPAG17 Missense_Mutation p.L831S 0.21 tolerated(0.05) benign(0.318) TCGA-IR-A3LC-01 1 145510328 145510328 G C RBM8A 3'UTR 0.17 TCGA-IR-A3LC-01 1 152282256 152282256 A G FLG Silent p.D1702D 0.25 TCGA-IR-A3LC-01 1 154179794 154179794 C G C1orf43 3'UTR 0.22 TCGA-IR-A3LC-01 1 158517747 158517747 A G OR6Y1 Missense_Mutation p.I50T 0.29 deleterious(0) probably_damaging(0.98) TCGA-IR-A3LC-01 1 21139650 21139650 C G EIF4G3 Splice_Site p.X1483_splice 0.30 TCGA-IR-A3LC-01 1 77529596 77529596 T C ST6GALNAC5 3'UTR 0.50 TCGA-IR-A3LC-01 1 94140433 94140433 C A BCAR3 Missense_Mutation p.Q18H 0.31 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-IR-A3LC-01 20 35740792 35740792 C G MROH8 Missense_Mutation p.E944Q 0.46 tolerated(0.36) benign(0.221) TCGA-IR-A3LC-01 20 47730364 47730364 T C STAU1 3'UTR 0.33 TCGA-IR-A3LC-01 21 14982955 14982955 C T POTED Missense_Mutation p.R136C 0.77 deleterious(0.03) benign(0.021) TCGA-IR-A3LC-01 22 40731617 40731617 G T TNRC6B 3'UTR 0.49 TCGA-IR-A3LC-01 22 41222510 41222510 C T ST13 3'UTR 0.21 TCGA-IR-A3LC-01 3 130720708 130720708 A G ATP2C1 Intron 0.62 TCGA-IR-A3LC-01 3 136664512 136664512 A G NCK1 Missense_Mutation p.Y105C 0.13 tolerated(0.07) probably_damaging(0.95) TCGA-IR-A3LC-01 3 142396905 142396905 A C PLS1 Missense_Mutation p.I177L 0.22 deleterious(0) benign(0.132) TCGA-IR-A3LC-01 4 141214528 141214528 C T RP11-425I13.3 RNA 0.38 TCGA-IR-A3LC-01 5 140044489 140044491 CTT - WDR55 5'UTR 0.36 TCGA-IR-A3LC-01 5 140595330 140595330 G A PCDHB13 Silent p.A545A 0.34 TCGA-IR-A3LC-01 5 148206606 148206608 TCA - ADRB2 In_Frame_Del p.I72del 0.48 TCGA-IR-A3LC-01 5 158585861 158585861 G A RNF145 Silent p.V633V 0.29 TCGA-IR-A3LC-01 5 172562340 172562342 ATA - CREBRF 3'UTR 0.41 TCGA-IR-A3LC-01 5 172755130 172755130 G A STC2 Missense_Mutation p.R23W 0.46 tolerated(0.07) possibly_damaging(0.72) TCGA-IR-A3LC-01 5 35064638 35064638 C G PRLR 3'UTR 0.54 TCGA-IR-A3LC-01 6 135787166 135787166 C G AHI1 Missense_Mutation p.E179Q 0.64 tolerated(0.58) benign(0.021) TCGA-IR-A3LC-01 6 161491789 161491789 C T MAP3K4 Silent p.L619L 0.51 TCGA-IR-A3LC-01 6 35436196 35436196 C G RPL10A 5'UTR 0.33 TCGA-IR-A3LC-01 6 4116174 4116174 T C ECI2 Silent p.G373G 0.74 TCGA-IR-A3LC-01 6 56484707 56484707 A G DST Intron 0.30 TCGA-IR-A3LC-01 7 12727305 12727305 A C ARL4A 5'UTR 0.32 TCGA-IR-A3LC-01 7 149153010 149153010 G C ZNF777 Missense_Mutation p.S35C 0.42 tolerated_low_confidence(0.08) possibly_damaging(0.513) TCGA-IR-A3LC-01 7 150915945 150915945 C A ABCF2 Missense_Mutation p.R344S 0.40 tolerated(0.79) possibly_damaging(0.788) TCGA-IR-A3LC-01 7 73521443 73521443 C T LIMK1 Missense_Mutation p.R329W 0.36 deleterious(0) possibly_damaging(0.816) TCGA-IR-A3LC-01 8 136561003 136561003 G A KHDRBS3 Missense_Mutation p.E111K 0.14 deleterious(0) probably_damaging(0.964) TCGA-IR-A3LC-01 8 144735037 144735037 C G ZNF623 3'UTR 0.39 TCGA-IR-A3LC-01 9 134134559 134134559 C T FAM78A 3'UTR 0.48 TCGA-IR-A3LC-01 9 139312510 139312511 CA G PMPCA Frame_Shift_Del p.I314Sfs*27 0.27 TCGA-IR-A3LC-01 9 21187205 21187205 G A IFNA4 Missense_Mutation p.S109F 0.32 tolerated(0.66) benign(0.006) TCGA-IR-A3LC-01 9 98638198 98638198 G C ERCC6L2 5'UTR 0.34 TCGA-IR-A3LC-01 X 12734823 12734823 G C FRMPD4 Missense_Mutation p.E749Q 0.29 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-IR-A3LC-01 X 152616101 152616101 G A ZNF275 3'UTR 0.24 TCGA-IR-A3LC-01 X 55033705 55033705 G A APEX2 Missense_Mutation p.R465H 0.30 deleterious(0.03) benign(0.302) TCGA-IR-A3LC-01 X 6452610 6452610 C T VCX3A 5'UTR 0.42 TCGA-IR-A3LC-01 X 78622859 78622859 C T ITM2A 5'Flank 0.27 TCGA-IR-A3LC-01 X 79942412 79942412 G T BRWD3 Missense_Mutation p.R1319S 0.21 tolerated(0.66) benign(0.042) TCGA-IR-A3LF-01 10 118645803 118645803 C T KIAA1598 3'UTR 0.10 TCGA-IR-A3LF-01 10 127705491 127705491 C G ADAM12 3'UTR 0.27 TCGA-IR-A3LF-01 10 129172094 129172094 G C DOCK1 Missense_Mutation p.R1140T 0.12 deleterious(0.03) possibly_damaging(0.587) TCGA-IR-A3LF-01 10 15561412 15561412 C T ITGA8 Splice_Site p.X995_splice 0.11 TCGA-IR-A3LF-01 10 32197508 32197508 C T ARHGAP12 Silent p.T92T 0.11 TCGA-IR-A3LF-01 10 61719190 61719190 C G C10orf40 Intron 0.11 TCGA-IR-A3LF-01 10 61719335 61719335 C T C10orf40 5'UTR 0.10 TCGA-IR-A3LF-01 10 81915638 81915638 G C ANXA11 Missense_Mutation p.L497V 0.10 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LF-01 10 88681445 88681445 C T BMPR1A Silent p.I445I 0.08 TCGA-IR-A3LF-01 11 101981793 101981793 G A YAP1 Missense_Mutation p.V72I 0.33 deleterious(0) possibly_damaging(0.849) TCGA-IR-A3LF-01 11 111168553 111168553 G A COLCA1 5'UTR 0.16 TCGA-IR-A3LF-01 11 113934436 113934436 C T ZBTB16 Silent p.A138A 0.17 TCGA-IR-A3LF-01 11 116633493 116633493 G A BUD13 Missense_Mutation p.S271F 0.13 deleterious(0.01) benign(0.013) TCGA-IR-A3LF-01 11 124618303 124618303 A G VSIG2 Silent p.Y278Y 0.45 TCGA-IR-A3LF-01 11 1464590 1464590 C A BRSK2 Missense_Mutation p.A243E 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-IR-A3LF-01 11 17517199 17517199 C T USH1C Missense_Mutation p.E858K 0.12 tolerated_low_confidence(0.18) benign(0) TCGA-IR-A3LF-01 11 2168806 2168806 C T INS-IGF2 3'UTR 0.15 TCGA-IR-A3LF-01 11 22363242 22363242 C T SLC17A6 Silent p.F85F 0.10 TCGA-IR-A3LF-01 11 45924612 45924612 G A MAPK8IP1 Missense_Mutation p.E432K 0.27 tolerated(0.06) probably_damaging(0.996) TCGA-IR-A3LF-01 11 64338482 64338482 G C SLC22A11 Missense_Mutation p.E541Q 0.09 tolerated(0.25) possibly_damaging(0.858) TCGA-IR-A3LF-01 12 104474574 104474574 C T HCFC2 Nonsense_Mutation p.R245* 0.10 TCGA-IR-A3LF-01 12 10603153 10603153 G T KLRC1 Silent p.L71L 0.33 TCGA-IR-A3LF-01 12 10603639 10603639 G C KLRC1 Silent p.T39T 0.09 TCGA-IR-A3LF-01 12 107279936 107279937 TT - RIC8B 3'UTR 0.15 TCGA-IR-A3LF-01 12 108643417 108643417 G T WSCD2 3'UTR 0.29 TCGA-IR-A3LF-01 12 31820847 31820847 G C METTL20 Missense_Mutation p.E238Q 0.06 tolerated(0.25) benign(0.028) TCGA-IR-A3LF-01 12 5021170 5021170 C T KCNA1 Missense_Mutation p.T209M 0.06 deleterious(0.03) possibly_damaging(0.897) TCGA-IR-A3LF-01 12 52698806 52698806 G A KRT86 Missense_Mutation p.E244K 0.06 deleterious(0.03) benign(0.254) TCGA-IR-A3LF-01 12 66251774 66251774 A G RP11-366L20.2 3'UTR 0.55 TCGA-IR-A3LF-01 12 78444771 78444771 G A NAV3 Missense_Mutation p.R787Q 0.11 tolerated(0.11) probably_damaging(0.937) TCGA-IR-A3LF-01 12 78444814 78444814 G A NAV3 Missense_Mutation p.M801I 0.09 tolerated(0.28) benign(0.002) TCGA-IR-A3LF-01 12 81064201 81064201 C G PTPRQ Missense_Mutation p.L2174V 0.14 deleterious(0.01) possibly_damaging(0.485) TCGA-IR-A3LF-01 12 8192501 8192501 G A FOXJ2 Missense_Mutation p.E25K 0.25 deleterious(0.04) probably_damaging(0.952) TCGA-IR-A3LF-01 12 88381726 88381726 G A C12orf50 Missense_Mutation p.H240Y 0.12 tolerated(0.1) possibly_damaging(0.72) TCGA-IR-A3LF-01 12 94613845 94613845 G A PLXNC1 Silent p.V536V 0.08 TCGA-IR-A3LF-01 13 44411505 44411505 G T CCDC122 Missense_Mutation p.Q245K 0.16 tolerated(0.09) possibly_damaging(0.732) TCGA-IR-A3LF-01 14 105461257 105461257 T G C14orf79 3'UTR 0.17 TCGA-IR-A3LF-01 14 26916852 26916852 C A NOVA1 3'UTR 0.45 TCGA-IR-A3LF-01 14 45372445 45372445 G C C14orf28 Missense_Mutation p.R187T 0.10 deleterious_low_confidence(0.01) benign(0.005) TCGA-IR-A3LF-01 14 47504461 47504461 G C MDGA2 Silent p.T524T 0.38 TCGA-IR-A3LF-01 14 75182714 75182714 C T FCF1 Silent p.H68H 0.25 TCGA-IR-A3LF-01 14 94845707 94845707 C T SERPINA1 Intron 0.15 TCGA-IR-A3LF-01 15 34113779 34113779 C T RYR3 Silent p.N3657N 0.10 TCGA-IR-A3LF-01 15 43738643 43738643 C T TP53BP1 Missense_Mutation p.M994I 0.17 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LF-01 15 64385984 64385984 C T FAM96A 5'UTR 0.14 TCGA-IR-A3LF-01 15 90771378 90771378 G A SEMA4B Missense_Mutation p.E673K 0.09 tolerated(0.64) benign(0.004) TCGA-IR-A3LF-01 15 93515518 93515518 G A CHD2 Silent p.K792K 0.15 TCGA-IR-A3LF-01 16 31368669 31368669 C T ITGAX Silent p.L138L 0.11 TCGA-IR-A3LF-01 16 70068259 70068259 C A MIR1972-2 3'Flank 0.20 TCGA-IR-A3LF-01 16 87678345 87678345 C T JPH3 Silent p.Y288Y 0.16 TCGA-IR-A3LF-01 17 19566669 19566669 G C ALDH3A2 Missense_Mutation p.D322H 0.12 deleterious(0.02) possibly_damaging(0.467) TCGA-IR-A3LF-01 17 29070364 29070364 G A SUZ12P RNA 0.06 TCGA-IR-A3LF-01 17 37879603 37879603 G C ERBB2 Missense_Mutation p.G660R 0.36 deleterious(0) probably_damaging(0.984) TCGA-IR-A3LF-01 17 37881425 37881425 G A ERBB2 Missense_Mutation p.D873N 0.27 tolerated(0.16) probably_damaging(0.999) TCGA-IR-A3LF-01 17 41958920 41958920 C T MPP2 Missense_Mutation p.R240Q 0.19 tolerated(0.28) benign(0.176) TCGA-IR-A3LF-01 17 43196380 43196380 C T PLCD3 Missense_Mutation p.E239K 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LF-01 17 44827213 44827213 C T NSF Silent p.F661F 0.16 TCGA-IR-A3LF-01 17 4685856 4685856 C T TM4SF5 Missense_Mutation p.S106L 0.07 tolerated(0.18) benign(0.011) TCGA-IR-A3LF-01 17 48072207 48072207 C A DLX3 Silent p.S52S 0.15 TCGA-IR-A3LF-01 17 6917967 6917967 G C C17orf49 5'UTR 0.29 TCGA-IR-A3LF-01 17 73622238 73622238 G A RECQL5 3'Flank 0.08 TCGA-IR-A3LF-01 17 74945068 74945068 G A MGAT5B 3'UTR 0.31 TCGA-IR-A3LF-01 17 7646391 7646391 G A DNAH2 Missense_Mutation p.R612Q 0.21 benign(0.015) TCGA-IR-A3LF-01 18 44554624 44554624 C T TCEB3C Silent p.P530P 0.05 TCGA-IR-A3LF-01 19 12014480 12014480 G C ZNF69 Silent p.V38V 0.12 TCGA-IR-A3LF-01 19 17599717 17599717 C T SLC27A1 Silent p.L285L 0.06 TCGA-IR-A3LF-01 19 17927708 17927708 G A INSL3 Missense_Mutation p.S149L 0.15 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-IR-A3LF-01 19 2808392 2808392 G A THOP1 Missense_Mutation p.E469K 0.09 tolerated(0.19) probably_damaging(0.917) TCGA-IR-A3LF-01 19 33878885 33878885 C T PEPD Missense_Mutation p.D419N 0.10 tolerated(0.13) benign(0.111) TCGA-IR-A3LF-01 19 35557161 35557161 C T HPN Silent p.S408S 0.10 TCGA-IR-A3LF-01 19 38794853 38794853 T C C19orf33 5'UTR 0.10 TCGA-IR-A3LF-01 19 40732342 40732342 C G CNTD2 Silent p.L69L 0.17 TCGA-IR-A3LF-01 19 44030582 44030582 C G ETHE1 Intron 0.11 TCGA-IR-A3LF-01 19 49013842 49013842 G A LMTK3 Silent p.F57F 0.18 TCGA-IR-A3LF-01 19 49538946 49538946 T C CGB1 Missense_Mutation p.D130G 0.34 tolerated(0.43) benign(0.227) TCGA-IR-A3LF-01 19 55944303 55944303 C G SHISA7 3'UTR 0.26 TCGA-IR-A3LF-01 19 56614301 56614301 G A ZNF787 Intron 0.13 TCGA-IR-A3LF-01 1 100908539 100908539 A G CDC14A Missense_Mutation p.Y169C 0.12 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LF-01 1 113084681 113084682 - T ST7L Frame_Shift_Ins p.E508Gfs*28 0.12 TCGA-IR-A3LF-01 1 1322818 1322818 G A CCNL2 Silent p.C452C 0.15 TCGA-IR-A3LF-01 1 154306643 154306643 G A ATP8B2 Nonsense_Mutation p.W250* 0.12 TCGA-IR-A3LF-01 1 154544260 154544260 G A CHRNB2 Missense_Mutation p.V321M 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-IR-A3LF-01 1 155695269 155695269 C T DAP3 Nonsense_Mutation p.R123* 0.06 TCGA-IR-A3LF-01 1 1669821 1669821 C T SLC35E2 Silent p.V175V 0.09 TCGA-IR-A3LF-01 1 167745398 167745398 C T MPZL1 Missense_Mutation p.H235Y 0.10 tolerated(0.78) possibly_damaging(0.528) TCGA-IR-A3LF-01 1 175996812 175996812 G C RFWD2 Missense_Mutation p.S542C 0.12 tolerated(0.49) probably_damaging(0.997) TCGA-IR-A3LF-01 1 200977902 200977902 G A KIF21B Silent p.L148L 0.26 TCGA-IR-A3LF-01 1 227921769 227921769 G A SNAP47 5'Flank 0.10 TCGA-IR-A3LF-01 1 245866009 245866009 G A KIF26B 3'UTR 0.07 TCGA-IR-A3LF-01 1 31347342 31347342 C T SDC3 Missense_Mutation p.E322K 0.14 deleterious(0) unknown(0) TCGA-IR-A3LF-01 1 38397457 38397457 C T INPP5B Intron 0.10 TCGA-IR-A3LF-01 1 44088825 44088825 C G PTPRF 3'UTR 0.12 TCGA-IR-A3LF-01 1 44596347 44596347 G A KLF17 Silent p.K363K 0.12 TCGA-IR-A3LF-01 1 53904244 53904244 G A SLC25A3P1 RNA 0.45 TCGA-IR-A3LF-01 1 67890809 67890809 G A SERBP1 Missense_Mutation p.R188C 0.08 deleterious(0) possibly_damaging(0.88) TCGA-IR-A3LF-01 20 20596757 20596757 C T RALGAPA2 Missense_Mutation p.D540N 0.10 deleterious(0.04) benign(0.062) TCGA-IR-A3LF-01 20 25477429 25477429 C T NINL Missense_Mutation p.E394K 0.18 deleterious(0.03) possibly_damaging(0.542) TCGA-IR-A3LF-01 20 61665882 61665882 G C LINC00029 RNA 0.23 TCGA-IR-A3LF-01 20 62867998 62867998 C A MYT1 Missense_Mutation p.D996E 0.08 possibly_damaging(0.755) TCGA-IR-A3LF-01 21 38523150 38523150 C T TTC3 Missense_Mutation p.P748S 0.12 deleterious(0) probably_damaging(0.978) TCGA-IR-A3LF-01 21 40570860 40570860 C T BRWD1 Missense_Mutation p.E1828K 0.09 tolerated_low_confidence(0.06) benign(0.05) TCGA-IR-A3LF-01 21 40981555 40981555 C G C21orf88 Missense_Mutation p.R36T 0.30 deleterious_low_confidence(0) benign(0.412) TCGA-IR-A3LF-01 22 37414531 37414531 G A TST Silent p.F81F 0.09 TCGA-IR-A3LF-01 22 39620575 39620575 G T PDGFB 3'UTR 0.19 TCGA-IR-A3LF-01 2 112873753 112873753 G A TMEM87B 3'UTR 0.13 TCGA-IR-A3LF-01 2 152548458 152548458 C T NEB Missense_Mutation p.E711K 0.07 possibly_damaging(0.829) TCGA-IR-A3LF-01 2 166771802 166771802 C T TTC21B Missense_Mutation p.E683K 0.10 tolerated(0.9) benign(0.356) TCGA-IR-A3LF-01 2 167298001 167298001 C A SCN7A Nonsense_Mutation p.E688* 0.06 TCGA-IR-A3LF-01 2 207572075 207572075 G A DYTN Missense_Mutation p.P83S 0.12 deleterious(0.03) probably_damaging(0.936) TCGA-IR-A3LF-01 2 210561651 210561651 G A MAP2 Silent p.K1466K 0.12 TCGA-IR-A3LF-01 2 210561658 210561658 G A MAP2 Missense_Mutation p.E1469K 0.12 tolerated(0.05) possibly_damaging(0.862) TCGA-IR-A3LF-01 2 225750496 225750496 C T DOCK10 Silent p.L213L 0.09 TCGA-IR-A3LF-01 2 234652220 234652220 A T UGT1A10 Intron 0.10 TCGA-IR-A3LF-01 2 234652221 234652221 G A UGT1A10 Intron 0.10 TCGA-IR-A3LF-01 2 242794803 242794803 C G PDCD1 Missense_Mutation p.E136Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LF-01 2 26427038 26427038 C G HADHA Silent p.L371L 0.09 TCGA-IR-A3LF-01 2 27430557 27430557 C T SLC5A6 5'UTR 0.12 TCGA-IR-A3LF-01 2 28808630 28808630 C T PLB1 Missense_Mutation p.S579F 0.09 tolerated(0.74) benign(0.038) TCGA-IR-A3LF-01 2 36776110 36776110 G C CRIM1 3'UTR 0.10 TCGA-IR-A3LF-01 2 55561531 55561531 C G CCDC88A Missense_Mutation p.R809T 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-IR-A3LF-01 2 55562045 55562045 C T CCDC88A Missense_Mutation p.E638K 0.37 deleterious(0.05) benign(0.297) TCGA-IR-A3LF-01 2 61275761 61275761 C G PEX13 Silent p.T356T 0.06 TCGA-IR-A3LF-01 3 130124439 130124439 G A COL6A5 Missense_Mutation p.R1430Q 0.19 deleterious(0.03) benign(0.084) TCGA-IR-A3LF-01 3 167217980 167217980 C G WDR49 Missense_Mutation p.E646Q 0.19 tolerated(0.42) benign(0.002) TCGA-IR-A3LF-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.26 deleterious(0.04) probably_damaging(0.96) TCGA-IR-A3LF-01 3 178951964 178951964 G C PIK3CA Missense_Mutation p.G1007R 0.11 tolerated(0.1) possibly_damaging(0.817) TCGA-IR-A3LF-01 3 184552475 184552475 C T VPS8 Missense_Mutation p.S131L 0.11 deleterious(0.01) possibly_damaging(0.735) TCGA-IR-A3LF-01 3 186038302 186038302 G A DGKG 5'UTR 0.31 TCGA-IR-A3LF-01 3 187443293 187443293 A - BCL6 Frame_Shift_Del p.F611Lfs*35 0.24 TCGA-IR-A3LF-01 3 33580331 33580331 C G CLASP2 Missense_Mutation p.D1178H 0.14 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LF-01 3 40351321 40351321 G A EIF1B 5'UTR 0.12 TCGA-IR-A3LF-01 3 47144898 47144898 G C SETD2 Missense_Mutation p.Q1619E 0.12 tolerated(0.09) benign(0.312) TCGA-IR-A3LF-01 3 52290648 52290648 C T WDR82 3'UTR 0.27 TCGA-IR-A3LF-01 3 93780081 93780081 C G DHFRL1 Missense_Mutation p.R92T 0.16 tolerated(0.33) benign(0.056) TCGA-IR-A3LF-01 4 157683230 157683230 C T PDGFC 3'UTR 0.11 TCGA-IR-A3LF-01 4 162307172 162307172 G A FSTL5 Silent p.Y757Y 0.07 TCGA-IR-A3LF-01 4 177114225 177114225 G A SPATA4 Silent p.F117F 0.23 TCGA-IR-A3LF-01 4 1945944 1945944 C T WHSC1 Intron 0.08 TCGA-IR-A3LF-01 4 3446052 3446052 G T HGFAC Nonsense_Mutation p.E205* 0.37 TCGA-IR-A3LF-01 4 54325719 54325720 TG - FIP1L1 3'UTR 0.27 TCGA-IR-A3LF-01 5 132537622 132537622 C T FSTL4 Intron 0.08 TCGA-IR-A3LF-01 5 138629656 138629656 G A MATR3 Intron 0.22 TCGA-IR-A3LF-01 5 140215713 140215713 C T PCDHA7 Missense_Mutation p.P582L 0.11 tolerated_low_confidence(0.07) benign(0.011) TCGA-IR-A3LF-01 5 160973755 160973755 A G GABRB2 5'UTR 0.31 TCGA-IR-A3LF-01 5 175530237 175530237 C T FAM153B Silent p.I147I 0.06 TCGA-IR-A3LF-01 5 175934527 175934527 A T FAF2 3'UTR 0.53 TCGA-IR-A3LF-01 5 178459886 178459886 G A ZNF879 Missense_Mutation p.E313K 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-IR-A3LF-01 5 226026 226026 G C SDHA Missense_Mutation p.R162T 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IR-A3LF-01 5 55407482 55407482 G A ANKRD55 Missense_Mutation p.P365S 0.15 tolerated_low_confidence(0.13) benign(0.013) TCGA-IR-A3LF-01 5 63802466 63802466 G A RGS7BP Silent p.P5P 0.14 TCGA-IR-A3LF-01 5 96249054 96249054 C G ERAP2 Missense_Mutation p.I850M 0.14 tolerated(0.08) probably_damaging(1) TCGA-IR-A3LF-01 6 127796911 127796911 C T SOGA3 Missense_Mutation p.E754K 0.07 deleterious(0.02) probably_damaging(0.93) TCGA-IR-A3LF-01 6 132171171 132171171 A G ENPP1 Missense_Mutation p.N119D 0.32 tolerated(0.49) possibly_damaging(0.515) TCGA-IR-A3LF-01 6 29796006 29796006 G C HLA-G Missense_Mutation p.E86Q 0.12 tolerated_low_confidence(0.32) benign(0.031) TCGA-IR-A3LF-01 6 30633382 30633382 G A DHX16 Silent p.H265H 0.55 TCGA-IR-A3LF-01 6 39290184 39290184 C T KCNK16 Missense_Mutation p.D45N 0.17 tolerated(0.45) benign(0.003) TCGA-IR-A3LF-01 6 41899290 41899290 C T BYSL Silent p.F287F 0.29 TCGA-IR-A3LF-01 6 42790704 42790704 C T GLTSCR1L Missense_Mutation p.S41F 0.17 deleterious(0.01) possibly_damaging(0.784) TCGA-IR-A3LF-01 6 56417462 56417462 G A DST Silent p.F2753F 0.15 TCGA-IR-A3LF-01 6 56417553 56417553 G C DST Nonsense_Mutation p.S2723* 0.10 TCGA-IR-A3LF-01 6 72984127 72984127 G A RIMS1 Silent p.E1158E 0.16 TCGA-IR-A3LF-01 6 85398359 85398359 T A RP11-132M7.3 5'Flank 0.50 TCGA-IR-A3LF-01 7 102417727 102417727 C T FAM185A Missense_Mutation p.S288L 0.08 tolerated(0.06) benign(0.327) TCGA-IR-A3LF-01 7 135276246 135276246 A G NUP205 Missense_Mutation p.T508A 0.23 tolerated(0.17) possibly_damaging(0.542) TCGA-IR-A3LF-01 7 135612793 135612793 G A AC015987.2 3'UTR 0.26 TCGA-IR-A3LF-01 7 142989416 142989416 G C CASP2 Missense_Mutation p.Q83H 0.13 deleterious(0.01) probably_damaging(0.992) TCGA-IR-A3LF-01 7 29552714 29552714 T C CHN2 3'UTR 0.40 TCGA-IR-A3LF-01 7 36489414 36489414 C G ANLN Silent p.V1073V 0.08 TCGA-IR-A3LF-01 7 48412032 48412032 C T ABCA13 Silent p.L3691L 0.13 TCGA-IR-A3LF-01 7 72081806 72081806 C T TYW1B Missense_Mutation p.E172K 0.05 tolerated(0.4) benign(0.236) TCGA-IR-A3LF-01 7 73646419 73646419 T C RFC2 3'UTR 0.10 TCGA-IR-A3LF-01 7 74113412 74113412 C T GTF2I Silent p.F120F 0.25 TCGA-IR-A3LF-01 7 74565185 74565185 G A GTF2IRD2B 3'UTR 0.07 TCGA-IR-A3LF-01 7 75511261 75511261 G A RHBDD2 Missense_Mutation p.R98H 0.08 deleterious(0) probably_damaging(1) TCGA-IR-A3LF-01 7 75625768 75625768 G A STYXL1 3'UTR 0.24 TCGA-IR-A3LF-01 7 98580932 98580932 G A TRRAP Missense_Mutation p.A2951T 0.11 benign(0.121) TCGA-IR-A3LF-01 8 110346606 110346606 C G ENY2 5'UTR 0.06 TCGA-IR-A3LF-01 8 124361609 124361609 C T ATAD2 Silent p.T574T 0.12 TCGA-IR-A3LF-01 8 13357394 13357394 C T DLC1 Missense_Mutation p.D63N 0.10 deleterious_low_confidence(0) benign(0.217) TCGA-IR-A3LF-01 8 145675918 145675918 C T CYHR1 Silent p.V311V 0.05 TCGA-IR-A3LF-01 8 23702275 23702275 C T STC1 3'UTR 0.26 TCGA-IR-A3LF-01 8 65488963 65488963 C T BHLHE22 5'Flank 0.33 TCGA-IR-A3LF-01 8 77618884 77618884 C T ZFHX4 Missense_Mutation p.A854V 0.07 possibly_damaging(0.695) TCGA-IR-A3LF-01 8 82712693 82712693 C T SNX16 3'UTR 0.23 TCGA-IR-A3LF-01 9 112141810 112141810 G T PTPN3 3'UTR 0.14 TCGA-IR-A3LF-01 9 135204702 135204702 C T SETX Silent p.S761S 0.38 TCGA-IR-A3LF-01 9 34521558 34521558 C T ENHO Missense_Mutation p.E46K 0.14 tolerated_low_confidence(0.19) possibly_damaging(0.486) TCGA-IR-A3LF-01 9 79319881 79319881 G A PRUNE2 Nonsense_Mutation p.R2437* 0.18 TCGA-IR-A3LF-01 9 95152240 95152240 C A OGN Nonsense_Mutation p.E176* 0.11 TCGA-IR-A3LF-01 X 119037199 119037199 C G AKAP14 Missense_Mutation p.Q5E 0.30 tolerated(0.62) benign(0.002) TCGA-IR-A3LF-01 X 14547471 14547471 C T GLRA2 5'Flank 0.21 TCGA-IR-A3LF-01 X 152808574 152808574 C T ATP2B3 Silent p.I288I 0.11 TCGA-IR-A3LF-01 X 24225503 24225503 C T ZFX Missense_Mutation p.S236L 0.13 tolerated(0.37) benign(0.043) TCGA-IR-A3LF-01 X 34961525 34961525 G A FAM47B Missense_Mutation p.E193K 0.05 tolerated(0.56) probably_damaging(0.997) TCGA-IR-A3LF-01 X 53106076 53106076 C G GPR173 Missense_Mutation p.F91L 0.12 deleterious(0.04) benign(0.063) TCGA-IR-A3LF-01 X 69637819 69637819 G A KIF4A Missense_Mutation p.D1113N 0.10 tolerated(0.05) benign(0.016) TCGA-IR-A3LF-01 X 70612788 70612788 C T TAF1 Missense_Mutation p.L1019F 0.41 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LF-01 X 7252034 7252034 G T STS Missense_Mutation p.D422Y 0.14 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LF-01 X 75648811 75648811 C A MAGEE1 Missense_Mutation p.S163Y 0.09 deleterious_low_confidence(0) benign(0.005) TCGA-IR-A3LF-01 X 75648955 75648955 C T MAGEE1 Missense_Mutation p.S211F 0.25 tolerated_low_confidence(0.08) benign(0.002) TCGA-IR-A3LF-01 X 75649207 75649207 C T MAGEE1 Missense_Mutation p.S295F 0.22 deleterious_low_confidence(0.01) benign(0.332) TCGA-IR-A3LF-01 X 78426971 78426971 G C GPR174 Missense_Mutation p.R156T 0.11 deleterious(0) probably_damaging(0.932) TCGA-IR-A3LF-01 X 79999566 79999566 G C BRWD3 Missense_Mutation p.L260V 0.11 deleterious(0) probably_damaging(0.926) TCGA-IR-A3LF-01 X 84528172 84528172 C T ZNF711 3'UTR 0.18 TCGA-IR-A3LH-01 10 102738363 102738363 G A SEMA4G Silent p.L203L 0.39 TCGA-IR-A3LH-01 10 104590404 104590404 C G CYP17A1 3'UTR 0.31 TCGA-IR-A3LH-01 10 104835960 104835960 C T CNNM2 Missense_Mutation p.S784F 0.24 deleterious(0.01) benign(0.438) TCGA-IR-A3LH-01 10 1065765 1065765 C G IDI2 Missense_Mutation p.E126Q 0.46 deleterious(0.05) benign(0.005) TCGA-IR-A3LH-01 10 124172455 124172455 C G PLEKHA1 Nonsense_Mutation p.S121* 0.33 TCGA-IR-A3LH-01 10 129905148 129905148 G C MKI67 Silent p.L1652L 0.33 TCGA-IR-A3LH-01 10 134945141 134945141 C T GPR123 3'UTR 0.38 TCGA-IR-A3LH-01 10 135352373 135352373 C G CYP2E1 Missense_Mutation p.L463V 0.30 tolerated(0.4) benign(0.022) TCGA-IR-A3LH-01 10 17126293 17126293 C T CUBN Missense_Mutation p.D760N 0.31 tolerated(0.18) benign(0.026) TCGA-IR-A3LH-01 10 18439857 18439857 G A CACNB2 Missense_Mutation p.D56N 0.23 deleterious(0.02) benign(0.004) TCGA-IR-A3LH-01 10 18940226 18940226 G A NSUN6 5'UTR 0.50 TCGA-IR-A3LH-01 10 27052880 27052880 G C ABI1 Missense_Mutation p.S277C 0.45 tolerated(0.1) benign(0.06) TCGA-IR-A3LH-01 10 34805961 34805961 G A PARD3 Nonsense_Mutation p.Q117* 0.25 TCGA-IR-A3LH-01 10 43615040 43615040 G A RET Silent p.E818E 0.22 TCGA-IR-A3LH-01 10 48370600 48370600 G C ZNF488 Missense_Mutation p.G23A 0.25 tolerated(0.18) benign(0.042) TCGA-IR-A3LH-01 10 49459636 49459636 C G FRMPD2 Missense_Mutation p.E42Q 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-IR-A3LH-01 10 49939252 49939252 C T WDFY4 Silent p.I409I 0.26 TCGA-IR-A3LH-01 10 50953419 50953419 C T OGDHL Missense_Mutation p.E534K 0.24 deleterious(0.01) possibly_damaging(0.634) TCGA-IR-A3LH-01 10 51589285 51589285 G C NCOA4 3'UTR 0.30 TCGA-IR-A3LH-01 10 69648778 69648778 C G SIRT1 Nonsense_Mutation p.S229* 0.12 TCGA-IR-A3LH-01 10 70531119 70531119 G A CCAR1 Missense_Mutation p.D819N 0.29 deleterious(0.04) unknown(0) TCGA-IR-A3LH-01 10 70531125 70531125 G A CCAR1 Missense_Mutation p.E821K 0.35 tolerated(0.13) unknown(0) TCGA-IR-A3LH-01 10 72195205 72195205 C G NODAL Missense_Mutation p.R243T 0.34 tolerated(0.07) benign(0.118) TCGA-IR-A3LH-01 10 81142152 81142152 C G ZCCHC24 3'UTR 0.22 TCGA-IR-A3LH-01 10 81142232 81142232 C T ZCCHC24 3'UTR 0.24 TCGA-IR-A3LH-01 10 81275251 81275251 C T EIF5AL1 3'UTR 0.23 TCGA-IR-A3LH-01 10 88719792 88719792 G A SNCG Silent p.V66V 0.30 TCGA-IR-A3LH-01 10 93778648 93778648 C G BTAF1 Missense_Mutation p.L1607V 0.30 deleterious(0) possibly_damaging(0.677) TCGA-IR-A3LH-01 10 94264597 94264597 C G IDE Missense_Mutation p.D462H 0.25 deleterious(0.01) benign(0.072) TCGA-IR-A3LH-01 10 98742267 98742267 G A C10orf12 Missense_Mutation p.D374N 0.27 tolerated(0.21) benign(0.023) TCGA-IR-A3LH-01 10 99527272 99527272 C T SFRP5 Silent p.%3D 0.34 TCGA-IR-A3LH-01 11 100845331 100845331 G C ARHGAP42 Missense_Mutation p.D618H 0.15 tolerated(0.08) possibly_damaging(0.862) TCGA-IR-A3LH-01 11 100847108 100847108 G A ARHGAP42 Missense_Mutation p.G726R 0.06 tolerated(0.22) benign(0.001) TCGA-IR-A3LH-01 11 100864487 100864487 G A TMEM133 3'UTR 0.07 TCGA-IR-A3LH-01 11 102650002 102650002 G A MMP10 Silent p.L146L 0.06 TCGA-IR-A3LH-01 11 102667859 102667859 C T MMP1 Missense_Mutation p.D129N 0.05 tolerated(0.05) possibly_damaging(0.656) TCGA-IR-A3LH-01 11 10327470 10327470 G C ADM Intron 0.27 TCGA-IR-A3LH-01 11 1104215 1104215 C T MUC2 Silent p.G2802G 0.33 TCGA-IR-A3LH-01 11 111749420 111749420 G CA FDXACB1 Frame_Shift_Ins p.V65Cfs*11 0.14 TCGA-IR-A3LH-01 11 115088689 115088689 C G CADM1 Missense_Mutation p.Q248H 0.33 tolerated(0.09) benign(0.174) TCGA-IR-A3LH-01 11 1151659 1151659 C T MUC5AC Silent p.L11L 0.23 TCGA-IR-A3LH-01 11 118924883 118924883 C T HYOU1 Silent p.V248V 0.44 TCGA-IR-A3LH-01 11 11989992 11989992 G A DKK3 Nonsense_Mutation p.Q160* 0.17 TCGA-IR-A3LH-01 11 120100515 120100515 C G OAF 3'UTR 0.26 TCGA-IR-A3LH-01 11 122805695 122805695 C G C11orf63 Missense_Mutation p.H516D 0.35 tolerated(0.39) benign(0.002) TCGA-IR-A3LH-01 11 123909245 123909245 G A OR10G7 Missense_Mutation p.S155F 0.31 deleterious(0) probably_damaging(0.991) TCGA-IR-A3LH-01 11 125660381 125660381 C T PATE3 Missense_Mutation p.L61F 0.35 deleterious(0.01) probably_damaging(0.967) TCGA-IR-A3LH-01 11 12901304 12901304 C G TEAD1 Nonsense_Mutation p.S127* 0.21 TCGA-IR-A3LH-01 11 133790132 133790132 G A IGSF9B Missense_Mutation p.T1163I 0.14 deleterious_low_confidence(0) benign(0.205) TCGA-IR-A3LH-01 11 133826714 133826714 C A IGSF9B 5'UTR 0.20 TCGA-IR-A3LH-01 11 15098849 15098849 G C CALCB Missense_Mutation p.R81T 0.19 deleterious(0) probably_damaging(0.968) TCGA-IR-A3LH-01 11 18309092 18309092 C T HPS5 Missense_Mutation p.E903K 0.21 deleterious(0.03) probably_damaging(0.967) TCGA-IR-A3LH-01 11 2005759 2005759 C T MRPL23-AS1 RNA 0.30 TCGA-IR-A3LH-01 11 2356589 2356589 C G CD81-AS1 Intron 0.24 TCGA-IR-A3LH-01 11 2683073 2683073 G C KCNQ1 Intron 0.16 TCGA-IR-A3LH-01 11 27395587 27395587 C T LGR4 Silent p.L396L 0.17 TCGA-IR-A3LH-01 11 292543 292543 C G ATHL1 Intron 0.18 TCGA-IR-A3LH-01 11 30034993 30034993 G T KCNA4 5'UTR 0.29 TCGA-IR-A3LH-01 11 32421506 32421506 G A WT1 Silent p.F362F 0.19 TCGA-IR-A3LH-01 11 33163373 33163373 G C CSTF3 Intron 0.22 TCGA-IR-A3LH-01 11 33163446 33163446 G C CSTF3 Silent p.L38L 0.14 TCGA-IR-A3LH-01 11 33762761 33762761 C T FBXO3 3'UTR 0.38 TCGA-IR-A3LH-01 11 36293275 36293275 C T COMMD9 3'Flank 0.23 TCGA-IR-A3LH-01 11 3774579 3774579 G C NUP98 Missense_Mutation p.L412V 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-IR-A3LH-01 11 3848676 3848676 G T RHOG 3'UTR 0.30 TCGA-IR-A3LH-01 11 47813479 47813479 C G NUP160 Intron 0.31 TCGA-IR-A3LH-01 11 47819353 47819353 G C NUP160 Missense_Mutation p.I1089M 0.22 tolerated(0.07) benign(0.223) TCGA-IR-A3LH-01 11 48238908 48238908 T C OR4B1 Missense_Mutation p.F183L 0.17 tolerated(1) benign(0.327) TCGA-IR-A3LH-01 11 55703784 55703784 G C OR5I1 Silent p.L31L 0.40 TCGA-IR-A3LH-01 11 56185669 56185669 G C OR5R1 Missense_Mutation p.L14V 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-IR-A3LH-01 11 57175223 57175223 G A SLC43A3 3'UTR 0.19 TCGA-IR-A3LH-01 11 57175269 57175269 G C SLC43A3 Missense_Mutation p.A491G 0.18 deleterious_low_confidence(0) benign(0.264) TCGA-IR-A3LH-01 11 61570319 61570319 C G FADS1 Missense_Mutation p.E470Q 0.25 tolerated(0.53) benign(0.115) TCGA-IR-A3LH-01 11 617413 617413 C T CDHR5 Missense_Mutation p.E826K 0.10 tolerated(0.41) unknown(0) TCGA-IR-A3LH-01 11 6239851 6239851 C G FAM160A2 Missense_Mutation p.E472Q 0.34 tolerated(0.13) possibly_damaging(0.677) TCGA-IR-A3LH-01 11 6265351 6265351 G C CNGA4 Silent p.V480V 0.24 TCGA-IR-A3LH-01 11 62871649 62871649 C T SLC22A24 Missense_Mutation p.E318K 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LH-01 11 62871743 62871743 C T SLC22A24 Silent p.L286L 0.27 TCGA-IR-A3LH-01 11 63606929 63606929 C T MARK2 5'UTR 0.11 TCGA-IR-A3LH-01 11 63986825 63986825 C T FERMT3 Silent p.L297L 0.21 TCGA-IR-A3LH-01 11 64012063 64012063 G A PPP1R14B 3'UTR 0.24 TCGA-IR-A3LH-01 11 64012070 64012070 G A PPP1R14B 3'UTR 0.22 TCGA-IR-A3LH-01 11 64012079 64012079 G A PPP1R14B 3'UTR 0.21 TCGA-IR-A3LH-01 11 64119016 64119016 G C CCDC88B Silent p.G1009G 0.30 TCGA-IR-A3LH-01 11 64511481 64511481 C T RASGRP2 Intron 0.17 TCGA-IR-A3LH-01 11 64536711 64536711 G A SF1 Missense_Mutation p.R380W 0.17 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 11 64567650 64567650 G A MAP4K2 Silent p.L282L 0.21 TCGA-IR-A3LH-01 11 64812806 64812806 G C NAALADL1 Silent p.L720L 0.18 TCGA-IR-A3LH-01 11 64889736 64889736 G A FAU 5'UTR 0.22 TCGA-IR-A3LH-01 11 64950385 64950385 G A CAPN1 Silent p.K71K 0.22 TCGA-IR-A3LH-01 11 65064746 65064746 C G POLA2 3'UTR 0.12 TCGA-IR-A3LH-01 11 65167291 65167291 C G FRMD8 Missense_Mutation p.I296M 0.26 deleterious(0) probably_damaging(0.965) TCGA-IR-A3LH-01 11 65404510 65404510 C T PCNXL3 3'UTR 0.20 TCGA-IR-A3LH-01 11 65404512 65404512 C T PCNXL3 3'UTR 0.21 TCGA-IR-A3LH-01 11 65409788 65409788 G A SIPA1 Silent p.E249E 0.17 TCGA-IR-A3LH-01 11 65421861 65421861 C T RELA Silent p.Q548Q 0.09 TCGA-IR-A3LH-01 11 65780823 65780823 C T CST6 Silent p.P134P 0.22 TCGA-IR-A3LH-01 11 65983718 65983718 C G PACS1 Missense_Mutation p.I263M 0.50 tolerated(0.12) benign(0.142) TCGA-IR-A3LH-01 11 65984233 65984233 C T PACS1 Missense_Mutation p.S322F 0.28 deleterious(0.04) benign(0.019) TCGA-IR-A3LH-01 11 66039341 66039341 G A RAB1B Splice_Site p.X29_splice 0.21 TCGA-IR-A3LH-01 11 66039887 66039887 C T RAB1B Missense_Mutation p.R79W 0.25 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 11 66384308 66384308 C T RBM14-RBM4 Silent p.F39F 0.32 TCGA-IR-A3LH-01 11 66384488 66384488 C T RBM14-RBM4 Silent p.F99F 0.17 TCGA-IR-A3LH-01 11 66475127 66475127 G A SPTBN2 Missense_Mutation p.R505W 0.24 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 11 67024771 67024771 G A KDM2A 3'UTR 0.19 TCGA-IR-A3LH-01 11 67256905 67256905 C G AIP Missense_Mutation p.I149M 0.27 tolerated(0.06) benign(0.406) TCGA-IR-A3LH-01 11 69631089 69631089 G A FGF3 Missense_Mutation p.S108L 0.21 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 11 70028709 70028709 C G ANO1 Silent p.L835L 0.17 TCGA-IR-A3LH-01 11 70172768 70172768 C G PPFIA1 Missense_Mutation p.I258M 0.21 tolerated(0.09) benign(0.305) TCGA-IR-A3LH-01 11 71818648 71818648 G A ANAPC15 3'Flank 0.31 TCGA-IR-A3LH-01 11 71819761 71819761 G A LRTOMT Silent p.L222L 0.26 TCGA-IR-A3LH-01 11 72554398 72554398 C T FCHSD2 Intron 0.25 TCGA-IR-A3LH-01 11 7324578 7324578 G A SYT9 Missense_Mutation p.V152I 0.27 tolerated(0.11) benign(0.023) TCGA-IR-A3LH-01 11 73748734 73748734 C T C2CD3 Silent p.L1890L 0.29 TCGA-IR-A3LH-01 11 74651876 74651876 C G XRRA1 Silent p.L16L 0.27 TCGA-IR-A3LH-01 11 74994373 74994373 G C ARRB1 Silent p.L104L 0.20 TCGA-IR-A3LH-01 11 8008766 8008766 C G EIF3F 5'UTR 0.26 TCGA-IR-A3LH-01 11 82693201 82693201 C T RAB30 3'UTR 0.28 TCGA-IR-A3LH-01 11 82879939 82879939 G C PCF11 Silent p.L854L 0.16 TCGA-IR-A3LH-01 11 85435824 85435824 G A SYTL2 Missense_Mutation p.S559L 0.15 deleterious(0.04) benign(0.435) TCGA-IR-A3LH-01 11 85437315 85437315 G A SYTL2 Missense_Mutation p.S62L 0.27 deleterious_low_confidence(0) benign(0.215) TCGA-IR-A3LH-01 11 865927 865927 G A TSPAN4 Missense_Mutation p.E192K 0.23 deleterious(0.01) possibly_damaging(0.71) TCGA-IR-A3LH-01 11 9072167 9072167 C T SCUBE2 Missense_Mutation p.R542Q 0.17 tolerated(0.5) benign(0.005) TCGA-IR-A3LH-01 11 92087928 92087928 G A FAT3 Missense_Mutation p.G884R 0.21 probably_damaging(1) TCGA-IR-A3LH-01 11 92532507 92532507 G T FAT3 Missense_Mutation p.D2110Y 0.15 probably_damaging(1) TCGA-IR-A3LH-01 11 92714991 92714991 C T MTNR1B Missense_Mutation p.T201M 0.15 deleterious(0) probably_damaging(0.939) TCGA-IR-A3LH-01 11 94280731 94280731 G A FUT4 3'UTR 0.17 TCGA-IR-A3LH-01 11 994122 994122 C G AP2A2 Missense_Mutation p.I611M 0.20 deleterious(0.04) benign(0.162) TCGA-IR-A3LH-01 12 100603861 100603861 C G ACTR6 Silent p.L130L 0.21 TCGA-IR-A3LH-01 12 106633846 106633846 G A CKAP4 Silent p.F255F 0.10 TCGA-IR-A3LH-01 12 107937845 107937845 C T BTBD11 Silent p.F473F 0.17 TCGA-IR-A3LH-01 12 108128300 108128300 C G PRDM4 Splice_Site p.X698_splice 0.30 TCGA-IR-A3LH-01 12 110346483 110346483 C T TCHP Silent p.F264F 0.32 TCGA-IR-A3LH-01 12 110630459 110630459 C T IFT81 Missense_Mutation p.S502L 0.22 deleterious(0.01) possibly_damaging(0.559) TCGA-IR-A3LH-01 12 112608139 112608139 C T HECTD4 Missense_Mutation p.G3871E 0.24 probably_damaging(0.998) TCGA-IR-A3LH-01 12 113388505 113388505 C T OAS3 Missense_Mutation p.S461L 0.41 deleterious(0) probably_damaging(0.931) TCGA-IR-A3LH-01 12 118590140 118590140 G A TAOK3 Silent p.L809L 0.23 TCGA-IR-A3LH-01 12 120527845 120527845 G A CCDC64 Silent p.L510L 0.21 TCGA-IR-A3LH-01 12 120750454 120750454 C G SIRT4 Silent p.V231V 0.23 TCGA-IR-A3LH-01 12 120903459 120903459 C G SRSF9 Missense_Mutation p.R107T 0.22 deleterious(0) probably_damaging(0.98) TCGA-IR-A3LH-01 12 121000862 121000862 C G RNF10 Missense_Mutation p.Q415E 0.22 tolerated(0.9) benign(0.011) TCGA-IR-A3LH-01 12 121132746 121132746 G A MLEC Silent p.L178L 0.25 TCGA-IR-A3LH-01 12 121682976 121682976 T C CAMKK2 Missense_Mutation p.E507G 0.37 tolerated(0.08) benign(0.016) TCGA-IR-A3LH-01 12 123069534 123069534 G T KNTC1 Missense_Mutation p.M1177I 0.28 tolerated(0.09) benign(0.027) TCGA-IR-A3LH-01 12 123706363 123706363 G A MPHOSPH9 5'UTR 0.22 TCGA-IR-A3LH-01 12 123983273 123983273 C G RILPL1 Missense_Mutation p.D207H 0.23 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LH-01 12 124272480 124272480 C T DNAH10 Silent p.D456D 0.24 TCGA-IR-A3LH-01 12 124497247 124497247 C A ZNF664 Missense_Mutation p.L186I 0.12 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LH-01 12 126138738 126138738 G A TMEM132B Missense_Mutation p.V907I 0.15 deleterious(0) possibly_damaging(0.659) TCGA-IR-A3LH-01 12 130856177 130856177 G C PIWIL1 3'UTR 0.30 TCGA-IR-A3LH-01 12 132530070 132530070 G A EP400 Missense_Mutation p.E2331K 0.29 unknown(0) TCGA-IR-A3LH-01 12 133446252 133446252 G A CHFR Missense_Mutation p.S191F 0.29 deleterious(0) possibly_damaging(0.718) TCGA-IR-A3LH-01 12 13366640 13366640 C G EMP1 Missense_Mutation p.F67L 0.32 tolerated(0.41) probably_damaging(0.999) TCGA-IR-A3LH-01 12 13366700 13366700 C G EMP1 Missense_Mutation p.F87L 0.25 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 12 13366732 13366732 C G EMP1 Nonsense_Mutation p.S98* 0.28 TCGA-IR-A3LH-01 12 1863672 1863672 C G ADIPOR2 Missense_Mutation p.H55D 0.15 tolerated(0.43) benign(0.012) TCGA-IR-A3LH-01 12 1940449 1940449 C T LRTM2 Missense_Mutation p.S139L 0.27 tolerated(0.98) benign(0.001) TCGA-IR-A3LH-01 12 21639444 21639444 G A RECQL Missense_Mutation p.S157L 0.19 tolerated(0.1) benign(0.184) TCGA-IR-A3LH-01 12 25357785 25357785 C T LYRM5 3'UTR 0.14 TCGA-IR-A3LH-01 12 25358367 25358367 G A KRAS 3'Flank 0.17 TCGA-IR-A3LH-01 12 27235002 27235002 G C C12orf71 Missense_Mutation p.Q139E 0.31 tolerated(1) benign(0.002) TCGA-IR-A3LH-01 12 27628604 27628604 G A SMCO2 Missense_Mutation p.G151E 0.29 deleterious(0.01) benign(0.008) TCGA-IR-A3LH-01 12 32138266 32138266 G C KIAA1551 Silent p.L1459L 0.50 TCGA-IR-A3LH-01 12 39716558 39716558 T A KIF21A Missense_Mutation p.I1195F 0.32 tolerated(0.06) benign(0.025) TCGA-IR-A3LH-01 12 39716559 39716559 C G KIF21A Missense_Mutation p.E1194D 0.30 tolerated(0.3) benign(0.012) TCGA-IR-A3LH-01 12 45105117 45105117 G A NELL2 Missense_Mutation p.H433Y 0.17 tolerated(0.11) benign(0.125) TCGA-IR-A3LH-01 12 45209912 45209912 G A NELL2 Silent p.P114P 0.15 TCGA-IR-A3LH-01 12 48061569 48061569 C G RPAP3 Missense_Mutation p.Q593H 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-IR-A3LH-01 12 48482958 48482958 G A SENP1 Intron 0.25 TCGA-IR-A3LH-01 12 49224420 49224420 G A DDX23 Silent p.I765I 0.21 TCGA-IR-A3LH-01 12 49743276 49743276 C A DNAJC22 Silent p.T207T 0.20 TCGA-IR-A3LH-01 12 50757009 50757009 C G FAM186A Missense_Mutation p.E111Q 0.18 deleterious(0) probably_damaging(0.952) TCGA-IR-A3LH-01 12 52470998 52470998 C G C12orf44 3'UTR 0.25 TCGA-IR-A3LH-01 12 52695763 52695763 G C KRT86 Silent p.R21R 0.27 TCGA-IR-A3LH-01 12 52914137 52914137 G A KRT5 5'UTR 0.13 TCGA-IR-A3LH-01 12 55420392 55420392 G C NEUROD4 Missense_Mutation p.E57Q 0.27 tolerated(0.08) possibly_damaging(0.588) TCGA-IR-A3LH-01 12 56222284 56222284 G A DNAJC14 Silent p.L53L 0.23 TCGA-IR-A3LH-01 12 56222339 56222339 G A DNAJC14 Missense_Mutation p.S35L 0.16 deleterious_low_confidence(0) benign(0.08) TCGA-IR-A3LH-01 12 56234954 56234954 C T MMP19 Missense_Mutation p.M80I 0.17 deleterious(0.05) probably_damaging(0.998) TCGA-IR-A3LH-01 12 56495457 56495457 C T ERBB3 Missense_Mutation p.S1216F 0.21 deleterious(0) possibly_damaging(0.896) TCGA-IR-A3LH-01 12 56495503 56495503 C T ERBB3 Silent p.L1231L 0.24 TCGA-IR-A3LH-01 12 56495513 56495513 C A ERBB3 Missense_Mutation p.L1235M 0.20 tolerated(0.11) possibly_damaging(0.687) TCGA-IR-A3LH-01 12 56602063 56602063 C T RNF41 Missense_Mutation p.E128K 0.20 deleterious(0) benign(0.409) TCGA-IR-A3LH-01 12 56718227 56718227 G A PAN2 Silent p.L593L 0.25 TCGA-IR-A3LH-01 12 56718400 56718400 G A PAN2 Missense_Mutation p.H565Y 0.24 tolerated(0.12) benign(0.125) TCGA-IR-A3LH-01 12 57492635 57492635 G C STAT6 Missense_Mutation p.S669C 0.27 deleterious(0.02) benign(0.229) TCGA-IR-A3LH-01 12 57493155 57493155 G A STAT6 Nonsense_Mutation p.R605* 0.26 TCGA-IR-A3LH-01 12 57906742 57906742 C T MARS Silent p.I654I 0.22 TCGA-IR-A3LH-01 12 60175068 60175068 G C SLC16A7 3'UTR 0.21 TCGA-IR-A3LH-01 12 66800072 66800072 C T GRIP1 Missense_Mutation p.D607N 0.15 deleterious(0.04) benign(0.401) TCGA-IR-A3LH-01 12 68642484 68642484 C T IL22 3'UTR 0.22 TCGA-IR-A3LH-01 12 70037512 70037512 G C BEST3 Missense_Mutation p.Q386E 0.21 tolerated(1) benign(0) TCGA-IR-A3LH-01 12 7022060 7022060 G A LRRC23 Missense_Mutation p.E309K 0.16 tolerated(0.14) benign(0.437) TCGA-IR-A3LH-01 12 7086371 7086371 G A LPCAT3 Silent p.F467F 0.29 TCGA-IR-A3LH-01 12 752874 752874 C T NINJ2 Intron 0.44 TCGA-IR-A3LH-01 12 78334875 78334875 G A NAV3 Missense_Mutation p.E126K 0.25 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-IR-A3LH-01 12 80191034 80191034 C G PPP1R12A Missense_Mutation p.E745Q 0.23 tolerated(0.27) probably_damaging(0.993) TCGA-IR-A3LH-01 12 88589037 88589037 G C TMTC3 Missense_Mutation p.D786H 0.16 deleterious(0.05) possibly_damaging(0.466) TCGA-IR-A3LH-01 12 89917392 89917392 C T GALNT4 Missense_Mutation p.G312E 0.14 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LH-01 12 96131685 96131685 G A NTN4 Missense_Mutation p.H275Y 0.16 tolerated(0.06) benign(0.028) TCGA-IR-A3LH-01 12 96131749 96131749 G A NTN4 Silent p.I253I 0.20 TCGA-IR-A3LH-01 12 96640948 96640948 C T ELK3 Silent p.F146F 0.20 TCGA-IR-A3LH-01 12 99020541 99020541 C G IKBIP Missense_Mutation p.E101Q 0.30 tolerated(0.12) possibly_damaging(0.841) TCGA-IR-A3LH-01 13 108885266 108885266 G C ABHD13 3'UTR 0.39 TCGA-IR-A3LH-01 13 25026552 25026552 G A PARP4 Silent p.C1002C 0.14 TCGA-IR-A3LH-01 13 25875932 25875932 C A NUPL1 Missense_Mutation p.F7L 0.25 tolerated(0.12) unknown(0) TCGA-IR-A3LH-01 13 32776588 32776588 C G FRY Silent p.L1314L 0.21 TCGA-IR-A3LH-01 13 32785125 32785125 C T FRY Silent p.P1515P 0.44 TCGA-IR-A3LH-01 13 32885681 32885681 G T ZAR1L Missense_Mutation p.P128T 0.28 tolerated(0.39) benign(0.001) TCGA-IR-A3LH-01 13 33091900 33091900 C G N4BP2L2 Intron 0.24 TCGA-IR-A3LH-01 13 34395290 34395290 C T RFC3 Missense_Mutation p.H37Y 0.17 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 13 38266217 38266217 G A TRPC4 Nonsense_Mutation p.Q385* 0.27 TCGA-IR-A3LH-01 13 39357288 39357288 G C FREM2 Missense_Mutation p.G1908A 0.28 deleterious(0) possibly_damaging(0.793) TCGA-IR-A3LH-01 13 49783481 49783481 C G FNDC3A 3'UTR 0.29 TCGA-IR-A3LH-01 13 50275867 50275867 C G KPNA3 3'UTR 0.20 TCGA-IR-A3LH-01 13 95839079 95839079 C G ABCC4 Missense_Mutation p.R474T 0.15 tolerated(0.11) benign(0.257) TCGA-IR-A3LH-01 14 19553571 19553571 C G POTEG Missense_Mutation p.S52C 0.06 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IR-A3LH-01 14 20248702 20248702 C T OR4M1 Missense_Mutation p.S74F 0.10 deleterious(0) probably_damaging(0.971) TCGA-IR-A3LH-01 14 21502283 21502283 C A RNASE13 Silent p.L55L 0.21 TCGA-IR-A3LH-01 14 21868389 21868389 C G CHD8 Missense_Mutation p.D1550H 0.25 deleterious(0.03) possibly_damaging(0.808) TCGA-IR-A3LH-01 14 21899210 21899210 C T CHD8 Missense_Mutation p.G198E 0.27 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-IR-A3LH-01 14 24034779 24034779 C T AP1G2 Intron 0.28 TCGA-IR-A3LH-01 14 24684984 24684984 G A MDP1 Silent p.F19F 0.20 TCGA-IR-A3LH-01 14 24779715 24779715 C T CIDEB 5'UTR 0.23 TCGA-IR-A3LH-01 14 26918136 26918136 G C NOVA1 Missense_Mutation p.L185V 0.29 deleterious(0) unknown(0) TCGA-IR-A3LH-01 14 39648436 39648436 G C PNN Missense_Mutation p.E214Q 0.17 deleterious(0.03) possibly_damaging(0.671) TCGA-IR-A3LH-01 14 44975541 44975541 G A FSCB Missense_Mutation p.S217L 0.20 tolerated(1) benign(0.118) TCGA-IR-A3LH-01 14 50255978 50255978 C G NEMF Missense_Mutation p.Q927H 0.14 deleterious(0.02) benign(0.004) TCGA-IR-A3LH-01 14 50256237 50256237 C T NEMF Missense_Mutation p.E892K 0.24 tolerated(0.31) benign(0.41) TCGA-IR-A3LH-01 14 50256283 50256283 C T NEMF Missense_Mutation p.M876I 0.21 deleterious(0.02) benign(0.003) TCGA-IR-A3LH-01 14 51094938 51094938 G A ATL1 Missense_Mutation p.D437N 0.33 tolerated(0.26) benign(0.442) TCGA-IR-A3LH-01 14 52907355 52907355 G C TXNDC16 Missense_Mutation p.Q644E 0.18 tolerated(0.63) benign(0.004) TCGA-IR-A3LH-01 14 55313836 55313836 G T GCH1 Silent p.I174I 0.15 TCGA-IR-A3LH-01 14 57755696 57755696 G A AP5M1 3'UTR 0.27 TCGA-IR-A3LH-01 14 59939803 59939803 C T L3HYPDH Silent p.A315A 0.15 TCGA-IR-A3LH-01 14 64518339 64518339 G C SYNE2 Missense_Mutation p.E2570Q 0.12 benign(0.184) TCGA-IR-A3LH-01 14 64518362 64518362 G T SYNE2 Missense_Mutation p.L2577F 0.14 possibly_damaging(0.65) TCGA-IR-A3LH-01 14 74762643 74762643 G T ABCD4 Missense_Mutation p.F194L 0.32 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LH-01 14 75348641 75348641 C T DLST 5'UTR 0.28 TCGA-IR-A3LH-01 14 81837384 81837384 G A STON2 Silent p.L173L 0.30 TCGA-IR-A3LH-01 14 90650517 90650517 G C KCNK13 Missense_Mutation p.V133L 0.35 tolerated(0.75) benign(0.004) TCGA-IR-A3LH-01 14 92040885 92040885 G C AL133373.1 Silent p.L24L 0.34 TCGA-IR-A3LH-01 14 92040948 92040948 G A AL133373.1 Silent p.V3V 0.38 TCGA-IR-A3LH-01 14 92126271 92126271 C T CATSPERB Missense_Mutation p.D448N 0.40 tolerated(0.51) benign(0.001) TCGA-IR-A3LH-01 14 94066945 94066945 G C UNC79 Missense_Mutation p.D958H 0.48 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 15 100230473 100230473 C T MEF2A Missense_Mutation p.S235F 0.35 deleterious(0) probably_damaging(0.983) TCGA-IR-A3LH-01 15 101716061 101716061 C T CHSY1 3'UTR 0.42 TCGA-IR-A3LH-01 15 20588619 20588619 C T HERC2P3 RNA 0.09 TCGA-IR-A3LH-01 15 28202762 28202762 G T OCA2 Missense_Mutation p.L586I 0.14 deleterious(0) probably_damaging(0.971) TCGA-IR-A3LH-01 15 29346175 29346175 G C APBA2 Missense_Mutation p.E30Q 0.24 deleterious_low_confidence(0.02) benign(0.01) TCGA-IR-A3LH-01 15 30034879 30034879 C G TJP1 Missense_Mutation p.E373Q 0.28 tolerated(0.12) benign(0.029) TCGA-IR-A3LH-01 15 31295118 31295118 G C TRPM1 Missense_Mutation p.S1279C 0.23 deleterious(0.03) benign(0.005) TCGA-IR-A3LH-01 15 34109084 34109084 C A RYR3 Missense_Mutation p.F3508L 0.40 benign(0.028) TCGA-IR-A3LH-01 15 40751231 40751231 G A BAHD1 Missense_Mutation p.D190N 0.27 deleterious(0.01) benign(0.169) TCGA-IR-A3LH-01 15 57544626 57544626 G A TCF12 Missense_Mutation p.R399Q 0.29 deleterious(0.04) probably_damaging(0.993) TCGA-IR-A3LH-01 15 62966062 62966062 G A TLN2 Silent p.Q275Q 0.29 TCGA-IR-A3LH-01 15 64980894 64980894 C G OAZ2 3'UTR 0.23 TCGA-IR-A3LH-01 15 64981340 64981340 C G OAZ2 Missense_Mutation p.E128Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LH-01 15 64981356 64981356 C T OAZ2 Silent p.L122L 0.19 TCGA-IR-A3LH-01 15 66977743 66977743 G A RP11-321F6.1 3'UTR 0.39 TCGA-IR-A3LH-01 15 69745196 69745196 G A RPLP1 5'UTR 0.26 TCGA-IR-A3LH-01 15 71211448 71211448 G C LRRC49 Missense_Mutation p.R214S 0.29 tolerated(0.21) benign(0.135) TCGA-IR-A3LH-01 15 74325523 74325523 G A PML Silent p.Q475Q 0.29 TCGA-IR-A3LH-01 15 79748474 79748474 C T KIAA1024 5'UTR 0.42 TCGA-IR-A3LH-01 15 85370781 85370781 C T ALPK3 Silent p.L285L 0.40 TCGA-IR-A3LH-01 15 90276398 90276398 C G WDR93 Missense_Mutation p.L498V 0.33 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LH-01 15 90814623 90814623 C T NGRN Missense_Mutation p.S160L 0.27 tolerated(0.48) benign(0.003) TCGA-IR-A3LH-01 15 90814635 90814635 C T NGRN Missense_Mutation p.P164L 0.25 tolerated(0.14) benign(0.006) TCGA-IR-A3LH-01 15 90814647 90814647 C T NGRN Missense_Mutation p.S168F 0.27 deleterious(0.01) probably_damaging(0.912) TCGA-IR-A3LH-01 15 90986623 90986623 C G IQGAP1 Intron 0.33 TCGA-IR-A3LH-01 15 92988086 92988086 G T ST8SIA2 Nonsense_Mutation p.E257* 0.42 TCGA-IR-A3LH-01 15 93162141 93162141 C G FAM174B 3'UTR 0.38 TCGA-IR-A3LH-01 16 10575839 10575839 G A ATF7IP2 Silent p.L594L 0.34 TCGA-IR-A3LH-01 16 16108345 16108345 C T ABCC1 Intron 0.18 TCGA-IR-A3LH-01 16 16291890 16291890 G C ABCC6 Silent p.V442V 0.21 TCGA-IR-A3LH-01 16 16295943 16295943 G A ABCC6 Missense_Mutation p.T364M 0.18 deleterious(0) possibly_damaging(0.903) TCGA-IR-A3LH-01 16 1718140 1718140 G A CRAMP1L Missense_Mutation p.A1094T 0.20 tolerated(0.2) possibly_damaging(0.615) TCGA-IR-A3LH-01 16 18826931 18826931 C T SMG1 Missense_Mutation p.E3449K 0.24 tolerated(0.11) benign(0.049) TCGA-IR-A3LH-01 16 18860627 18860627 G C SMG1 Silent p.L1845L 0.22 TCGA-IR-A3LH-01 16 18881956 18881956 G C SMG1 Nonsense_Mutation p.S823* 0.20 TCGA-IR-A3LH-01 16 20492226 20492226 G C ACSM2A Missense_Mutation p.D498H 0.14 deleterious(0) probably_damaging(0.919) TCGA-IR-A3LH-01 16 2094628 2094628 C T NTHL1 Intron 0.23 TCGA-IR-A3LH-01 16 21063145 21063145 G A DNAH3 Silent p.L1362L 0.26 TCGA-IR-A3LH-01 16 21721247 21721247 G A OTOA Silent p.Q381Q 0.29 TCGA-IR-A3LH-01 16 2227811 2227811 C T CASKIN1 3'UTR 0.15 TCGA-IR-A3LH-01 16 2345606 2345606 C T ABCA3 Missense_Mutation p.R800K 0.23 tolerated(1) benign(0) TCGA-IR-A3LH-01 16 2487306 2487306 G C CCNF Missense_Mutation p.E175Q 0.18 tolerated(0.09) benign(0.206) TCGA-IR-A3LH-01 16 27366430 27366430 C T IL4R Intron 0.29 TCGA-IR-A3LH-01 16 28468242 28468242 G A NPIPB7 Missense_Mutation p.P250S 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-IR-A3LH-01 16 28843855 28843855 G C ATXN2L Missense_Mutation p.E519Q 0.16 deleterious(0.02) possibly_damaging(0.873) TCGA-IR-A3LH-01 16 28844464 28844464 G C ATXN2L Missense_Mutation p.E582Q 0.17 tolerated(0.13) benign(0.013) TCGA-IR-A3LH-01 16 28844674 28844674 G A ATXN2L Missense_Mutation p.E652K 0.21 deleterious(0.01) benign(0.059) TCGA-IR-A3LH-01 16 30077131 30077131 C G ALDOA Intron 0.28 TCGA-IR-A3LH-01 16 30386135 30386135 C T MYLPF 5'UTR 0.19 TCGA-IR-A3LH-01 16 30594342 30594342 C T ZNF785 Missense_Mutation p.E253K 0.22 deleterious(0.03) probably_damaging(0.966) TCGA-IR-A3LH-01 16 30594797 30594797 C T ZNF785 Intron 0.25 TCGA-IR-A3LH-01 16 30594848 30594848 C T ZNF785 Intron 0.18 TCGA-IR-A3LH-01 16 30596725 30596725 C T ZNF785 Intron 0.22 TCGA-IR-A3LH-01 16 30596840 30596840 G T ZNF785 Missense_Mutation p.F31L 0.28 deleterious(0) possibly_damaging(0.787) TCGA-IR-A3LH-01 16 30748767 30748767 C A SRCAP Nonsense_Mutation p.S2469* 0.23 TCGA-IR-A3LH-01 16 30748823 30748823 C G SRCAP Missense_Mutation p.P2488A 0.22 unknown(0) TCGA-IR-A3LH-01 16 31121765 31121765 C T BCKDK Missense_Mutation p.S196L 0.33 deleterious(0) probably_damaging(0.987) TCGA-IR-A3LH-01 16 31424553 31424553 C G ITGAD Nonsense_Mutation p.S661* 0.20 TCGA-IR-A3LH-01 16 3351190 3351190 C G TIGD7 5'UTR 0.23 TCGA-IR-A3LH-01 16 3658824 3658824 C T SLX4 Missense_Mutation p.D48N 0.21 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 16 4383345 4383345 C T GLIS2 Intron 0.22 TCGA-IR-A3LH-01 16 46706273 46706273 G A VPS35 Silent p.L424L 0.23 TCGA-IR-A3LH-01 16 50707416 50707416 G A SNX20 Silent p.F284F 0.14 TCGA-IR-A3LH-01 16 50733855 50733855 C G NOD2 Missense_Mutation p.P177R 0.36 tolerated(0.79) possibly_damaging(0.866) TCGA-IR-A3LH-01 16 53360357 53360357 C T CHD9 3'UTR 0.24 TCGA-IR-A3LH-01 16 53360542 53360542 C T CHD9 3'UTR 0.37 TCGA-IR-A3LH-01 16 53729285 53729285 G A RPGRIP1L Intron 0.12 TCGA-IR-A3LH-01 16 55527078 55527078 C G MMP2 Missense_Mutation p.P449A 0.26 deleterious(0.01) benign(0.001) TCGA-IR-A3LH-01 16 55734065 55734065 C G SLC6A2 Silent p.V535V 0.17 TCGA-IR-A3LH-01 16 57712222 57712222 C T GPR97 Silent p.L162L 0.16 TCGA-IR-A3LH-01 16 57850193 57850193 G A CTD-2600O9.1 Missense_Mutation p.E38K 0.23 possibly_damaging(0.486) TCGA-IR-A3LH-01 16 66620961 66620961 G C CMTM2 Missense_Mutation p.R169T 0.23 tolerated(0.13) benign(0.028) TCGA-IR-A3LH-01 16 67181916 67181916 C G C16orf70 3'UTR 0.23 TCGA-IR-A3LH-01 16 68057070 68057070 G C DDX28 Silent p.L12L 0.19 TCGA-IR-A3LH-01 16 68867208 68867208 G A CDH1 Missense_Mutation p.D819N 0.16 tolerated(0.18) probably_damaging(1) TCGA-IR-A3LH-01 16 69727884 69727884 C T NFAT5 Nonsense_Mutation p.Q1386* 0.21 TCGA-IR-A3LH-01 16 69727915 69727915 C T NFAT5 Missense_Mutation p.P1396L 0.24 benign(0.195) TCGA-IR-A3LH-01 16 70603912 70603912 G A SF3B3 Missense_Mutation p.E1090K 0.20 tolerated(0.25) benign(0.41) TCGA-IR-A3LH-01 16 72159139 72159139 C G PMFBP1 Missense_Mutation p.E807Q 0.19 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LH-01 16 739196 739196 C G WDR24 Missense_Mutation p.D149H 0.22 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 16 739992 739992 C T WDR24 5'UTR 0.47 TCGA-IR-A3LH-01 16 77316692 77316692 G T ADAMTS18 3'UTR 0.20 TCGA-IR-A3LH-01 16 79245704 79245704 G C WWOX 3'UTR 0.29 TCGA-IR-A3LH-01 16 81208268 81208268 G A PKD1L2 Silent p.V201V 0.35 TCGA-IR-A3LH-01 16 83816988 83816988 G A CDH13 Missense_Mutation p.C729Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 16 85711821 85711821 G T GINS2 Missense_Mutation p.F185L 0.13 tolerated_low_confidence(0.2) benign(0) TCGA-IR-A3LH-01 16 88949138 88949138 G T CBFA2T3 Silent p.I383I 0.27 TCGA-IR-A3LH-01 16 90020648 90020648 C G DEF8 Intron 0.12 TCGA-IR-A3LH-01 16 90075276 90075276 C T DBNDD1 Missense_Mutation p.E99K 0.20 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LH-01 17 15142858 15142858 G C PMP22 Missense_Mutation p.F83L 0.28 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LH-01 17 1554817 1554817 G C PRPF8 Missense_Mutation p.Q2181E 0.35 tolerated(0.06) possibly_damaging(0.683) TCGA-IR-A3LH-01 17 1554945 1554945 G C PRPF8 Silent p.L2169L 0.37 TCGA-IR-A3LH-01 17 16852118 16852118 C T TNFRSF13B Missense_Mutation p.E127K 0.33 tolerated(0.21) possibly_damaging(0.59) TCGA-IR-A3LH-01 17 21217859 21217859 A G MAP2K3 3'UTR 0.20 TCGA-IR-A3LH-01 17 26919672 26919672 G C SPAG5 Missense_Mutation p.S197C 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.716) TCGA-IR-A3LH-01 17 27086112 27086112 C G FAM222B Missense_Mutation p.E289Q 0.23 tolerated(0.18) possibly_damaging(0.88) TCGA-IR-A3LH-01 17 33925298 33925300 GAG AT AP2B1 Frame_Shift_Del p.R30* 0.23 TCGA-IR-A3LH-01 17 34233433 34233433 G A AC015849.16 RNA 0.25 TCGA-IR-A3LH-01 17 36104746 36104746 C G HNF1B Missense_Mutation p.E44Q 0.18 tolerated(0.11) probably_damaging(0.952) TCGA-IR-A3LH-01 17 36935684 36935684 C T PIP4K2B Silent p.R202R 0.26 TCGA-IR-A3LH-01 17 37566171 37566171 C T MED1 Missense_Mutation p.R768Q 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IR-A3LH-01 17 37566301 37566301 C T MED1 Missense_Mutation p.D725N 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IR-A3LH-01 17 37566361 37566361 C A MED1 Nonsense_Mutation p.E705* 0.17 TCGA-IR-A3LH-01 17 37566664 37566664 G C MED1 Missense_Mutation p.L604V 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IR-A3LH-01 17 37566950 37566950 C A MED1 Missense_Mutation p.M508I 0.22 deleterious(0.04) probably_damaging(0.985) TCGA-IR-A3LH-01 17 39041320 39041320 C T KRT20 Missense_Mutation p.G40R 0.12 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LH-01 17 3928305 3928305 G A ZZEF1 Silent p.L2334L 0.30 TCGA-IR-A3LH-01 17 39623157 39623157 G C KRT32 Missense_Mutation p.P141A 0.27 deleterious(0.02) possibly_damaging(0.61) TCGA-IR-A3LH-01 17 40690485 40690485 C G NAGLU Missense_Mutation p.I220M 0.29 tolerated(0.14) benign(0.027) TCGA-IR-A3LH-01 17 40879727 40879727 C T EZH1 Missense_Mutation p.E58K 0.23 tolerated(0.56) benign(0.371) TCGA-IR-A3LH-01 17 42082117 42082117 G A NAGS Missense_Mutation p.R29Q 0.20 deleterious_low_confidence(0.03) benign(0.238) TCGA-IR-A3LH-01 17 42089344 42089344 C G TMEM101 Missense_Mutation p.E242D 0.24 tolerated(0.42) possibly_damaging(0.801) TCGA-IR-A3LH-01 17 42090494 42090494 G A TMEM101 Silent p.I116I 0.22 TCGA-IR-A3LH-01 17 43713847 43713847 C T CRHR1-IT1 RNA 0.15 TCGA-IR-A3LH-01 17 4642687 4642687 G C CXCL16 Missense_Mutation p.S2C 0.40 tolerated_low_confidence(0.21) benign(0) TCGA-IR-A3LH-01 17 4799783 4799783 G A MINK1 Silent p.E1225E 0.33 TCGA-IR-A3LH-01 17 4803096 4803096 G C C17orf107 Missense_Mutation p.W13C 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IR-A3LH-01 17 48050454 48050454 C T DLX4 Silent p.L101L 0.09 TCGA-IR-A3LH-01 17 48356300 48356300 C T TMEM92 Silent p.I103I 0.15 TCGA-IR-A3LH-01 17 48356666 48356666 C G TMEM92 Missense_Mutation p.F159L 0.17 tolerated(0.11) probably_damaging(0.997) TCGA-IR-A3LH-01 17 48356727 48356727 C G TMEM92 3'UTR 0.26 TCGA-IR-A3LH-01 17 48745873 48745873 C T ABCC3 Missense_Mutation p.S622F 0.30 deleterious(0.01) possibly_damaging(0.463) TCGA-IR-A3LH-01 17 48828531 48828531 C G LUC7L3 3'UTR 0.23 TCGA-IR-A3LH-01 17 4925560 4925560 C T KIF1C Silent p.I728I 0.35 TCGA-IR-A3LH-01 17 54535256 54535256 G C ANKFN1 Silent p.L494L 0.15 TCGA-IR-A3LH-01 17 54969328 54969328 G A TRIM25 Silent p.L542L 0.21 TCGA-IR-A3LH-01 17 55058454 55058454 G C SCPEP1 Missense_Mutation p.D30H 0.33 tolerated(0.12) benign(0.033) TCGA-IR-A3LH-01 17 55123547 55123547 C T RNF126P1 RNA 0.28 TCGA-IR-A3LH-01 17 56581221 56581221 G A MTMR4 Silent p.L565L 0.13 TCGA-IR-A3LH-01 17 57477433 57477433 G C YPEL2 3'UTR 0.26 TCGA-IR-A3LH-01 17 57917971 57917971 G C VMP1 3'UTR 0.16 TCGA-IR-A3LH-01 17 61574949 61574949 C T ACE 3'UTR 0.25 TCGA-IR-A3LH-01 17 61771721 61771721 C T MAP3K3 3'UTR 0.32 TCGA-IR-A3LH-01 17 61914582 61914582 C G SMARCD2 Missense_Mutation p.K139N 0.26 deleterious(0) possibly_damaging(0.738) TCGA-IR-A3LH-01 17 62022075 62022075 G A SCN4A Silent p.F1290F 0.15 TCGA-IR-A3LH-01 17 62022108 62022108 G A SCN4A Silent p.I1279I 0.18 TCGA-IR-A3LH-01 17 63204072 63204072 C G RGS9 Missense_Mutation p.I412M 0.26 tolerated(0.39) benign(0.111) TCGA-IR-A3LH-01 17 6915855 6915855 G C RNASEK 5'UTR 0.30 TCGA-IR-A3LH-01 17 6940134 6940134 C G SLC16A13 Silent p.L96L 0.16 TCGA-IR-A3LH-01 17 72768120 72768120 G T NAT9 Missense_Mutation p.F156L 0.21 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 17 72843459 72843459 G T GRIN2C Silent p.L663L 0.23 TCGA-IR-A3LH-01 17 73127279 73127279 G A NT5C Missense_Mutation p.P91L 0.15 tolerated(0.06) benign(0.003) TCGA-IR-A3LH-01 17 73214277 73214277 C T NUP85 Intron 0.17 TCGA-IR-A3LH-01 17 73499965 73499965 C T CASKIN2 Missense_Mutation p.D516N 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-IR-A3LH-01 17 73559502 73559502 G A LLGL2 Missense_Mutation p.E262K 0.18 tolerated(0.16) benign(0.002) TCGA-IR-A3LH-01 17 73585671 73585671 G C MYO15B 5'Flank 0.29 TCGA-IR-A3LH-01 17 7365162 7365162 G A ZBTB4 3'UTR 0.31 TCGA-IR-A3LH-01 17 73774739 73774739 C T H3F3B Silent p.K116K 0.27 TCGA-IR-A3LH-01 17 74066478 74066478 C A SRP68 Nonsense_Mutation p.G78* 0.31 TCGA-IR-A3LH-01 17 76430271 76430271 C G DNAH17 Missense_Mutation p.E4016Q 0.26 possibly_damaging(0.891) TCGA-IR-A3LH-01 17 76867018 76867018 G A TIMP2 Missense_Mutation p.S101L 0.14 tolerated(0.17) benign(0.014) TCGA-IR-A3LH-01 17 76969269 76969269 C T LGALS3BP Missense_Mutation p.E138K 0.31 tolerated(0.12) possibly_damaging(0.606) TCGA-IR-A3LH-01 17 77085800 77085800 C T RBFOX3 3'UTR 0.22 TCGA-IR-A3LH-01 17 77085807 77085807 C T RBFOX3 3'UTR 0.22 TCGA-IR-A3LH-01 17 78410598 78410598 C T ENDOV 3'UTR 0.30 TCGA-IR-A3LH-01 17 79219761 79219761 C T SLC38A10 Missense_Mutation p.M985I 0.22 tolerated(0.13) benign(0.025) TCGA-IR-A3LH-01 17 79244820 79244820 C G SLC38A10 Missense_Mutation p.E343D 0.30 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 17 80041246 80041246 G C FASN Missense_Mutation p.F1799L 0.31 tolerated(1) benign(0) TCGA-IR-A3LH-01 18 12785817 12785817 G C PTPN2 3'UTR 0.43 TCGA-IR-A3LH-01 18 13423629 13423629 C G LDLRAD4 Intron 0.33 TCGA-IR-A3LH-01 18 18534772 18534772 C T ROCK1 Silent p.K1275K 0.15 TCGA-IR-A3LH-01 18 19283676 19283676 G A ABHD3 Silent p.F65F 0.38 TCGA-IR-A3LH-01 18 2585130 2585130 G A NDC80 Missense_Mutation p.E200K 0.25 tolerated(0.28) benign(0.011) TCGA-IR-A3LH-01 18 29204794 29204794 C G B4GALT6 3'UTR 0.25 TCGA-IR-A3LH-01 18 29617208 29617208 G C RNF125 Missense_Mutation p.K98N 0.23 tolerated(0.13) benign(0.011) TCGA-IR-A3LH-01 18 43796150 43796150 C T C18orf25 Missense_Mutation p.H102Y 0.43 probably_damaging(0.993) TCGA-IR-A3LH-01 18 47093845 47093845 C G LIPG Missense_Mutation p.L105V 0.47 deleterious(0) possibly_damaging(0.896) TCGA-IR-A3LH-01 18 56063876 56063876 G A NEDD4L 3'UTR 0.23 TCGA-IR-A3LH-01 18 672892 672892 C G TYMS Silent p.L279L 0.14 TCGA-IR-A3LH-01 18 67994958 67994958 C G SOCS6 3'UTR 0.35 TCGA-IR-A3LH-01 18 9257210 9257210 C T ANKRD12 Silent p.V1315V 0.26 TCGA-IR-A3LH-01 18 9258423 9258423 G A ANKRD12 Missense_Mutation p.E1720K 0.27 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-IR-A3LH-01 19 10579116 10579116 G C PDE4A 3'UTR 0.14 TCGA-IR-A3LH-01 19 1111509 1111509 G C SBNO2 Missense_Mutation p.F935L 0.20 tolerated(0.08) benign(0.12) TCGA-IR-A3LH-01 19 11464470 11464470 C G CCDC159 Missense_Mutation p.S231C 0.30 deleterious(0) probably_damaging(0.938) TCGA-IR-A3LH-01 19 11492424 11492424 G A EPOR Missense_Mutation p.H177Y 0.15 tolerated(0.6) benign(0.274) TCGA-IR-A3LH-01 19 11708313 11708313 C T ZNF627 5'UTR 0.37 TCGA-IR-A3LH-01 19 12432090 12432090 G A ZNF563 Silent p.L63L 0.23 TCGA-IR-A3LH-01 19 12491618 12491618 G C CTD-3105H18.14 3'UTR 0.22 TCGA-IR-A3LH-01 19 12767832 12767832 G C MAN2B1 Missense_Mutation p.F486L 0.48 tolerated(0.68) benign(0) TCGA-IR-A3LH-01 19 12791023 12791023 G T DHPS Silent p.I108I 0.29 TCGA-IR-A3LH-01 19 12792434 12792434 G C DHPS Missense_Mutation p.F49L 0.11 tolerated(0.28) benign(0.004) TCGA-IR-A3LH-01 19 12902541 12902541 G C JUNB 5'UTR 0.29 TCGA-IR-A3LH-01 19 12958772 12958772 C G MAST1 Missense_Mutation p.I225M 0.24 deleterious(0.02) probably_damaging(0.929) TCGA-IR-A3LH-01 19 14141637 14141637 G T RLN3 Missense_Mutation p.R102S 0.27 tolerated(0.83) benign(0.002) TCGA-IR-A3LH-01 19 14160003 14160003 G A IL27RA Missense_Mutation p.D427N 0.26 tolerated(0.11) benign(0.055) TCGA-IR-A3LH-01 19 14266174 14266174 C T LPHN1 Silent p.K1102K 0.29 TCGA-IR-A3LH-01 19 15067377 15067377 G T SLC1A6 Silent p.L360L 0.15 TCGA-IR-A3LH-01 19 15540510 15540510 G A WIZ Intron 0.19 TCGA-IR-A3LH-01 19 16222825 16222825 C G RAB8A Missense_Mutation p.I38M 0.25 deleterious(0) possibly_damaging(0.658) TCGA-IR-A3LH-01 19 16860666 16860666 C T NWD1 Nonsense_Mutation p.Q405* 0.18 TCGA-IR-A3LH-01 19 17088210 17088210 G A CPAMD8 Nonsense_Mutation p.Q623* 0.35 TCGA-IR-A3LH-01 19 17953301 17953301 C T JAK3 Missense_Mutation p.A229T 0.50 tolerated(0.35) benign(0.014) TCGA-IR-A3LH-01 19 18377934 18377934 C T KIAA1683 Missense_Mutation p.R139H 0.36 deleterious(0.03) probably_damaging(0.981) TCGA-IR-A3LH-01 19 18507683 18507683 C T LRRC25 Missense_Mutation p.D31N 0.23 tolerated(0.9) benign(0.001) TCGA-IR-A3LH-01 19 18974274 18974274 G A UPF1 Silent p.P876P 0.25 TCGA-IR-A3LH-01 19 19030098 19030098 G A COPE Silent p.F20F 0.16 TCGA-IR-A3LH-01 19 19327807 19327807 G C NCAN Missense_Mutation p.Q15H 0.23 tolerated(0.22) possibly_damaging(0.556) TCGA-IR-A3LH-01 19 19368582 19368582 C G HAPLN4 3'UTR 0.23 TCGA-IR-A3LH-01 19 19379487 19379487 C T TM6SF2 Missense_Mutation p.M187I 0.21 tolerated(0.38) benign(0) TCGA-IR-A3LH-01 19 2109922 2109922 G A AP3D1 Silent p.F1100F 0.29 TCGA-IR-A3LH-01 19 22364025 22364025 C G ZNF676 Missense_Mutation p.R165T 0.22 tolerated(0.44) benign(0.029) TCGA-IR-A3LH-01 19 22782543 22782543 G C AC011467.1 5'Flank 0.24 TCGA-IR-A3LH-01 19 2434313 2434313 G A LMNB2 Silent p.L394L 0.33 TCGA-IR-A3LH-01 19 2987353 2987353 G A TLE6 Splice_Site p.X181_splice 0.33 TCGA-IR-A3LH-01 19 3025051 3025051 G C TLE2 Missense_Mutation p.I87M 0.18 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LH-01 19 34833196 34833196 C G KIAA0355 Missense_Mutation p.S786C 0.10 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-IR-A3LH-01 19 35501052 35501052 G A GRAMD1A Missense_Mutation p.E128K 0.24 deleterious(0) probably_damaging(0.942) TCGA-IR-A3LH-01 19 3600354 3600354 G A TBXA2R Silent p.F93F 0.20 TCGA-IR-A3LH-01 19 36499116 36499116 C T SYNE4 Intron 0.13 TCGA-IR-A3LH-01 19 36504311 36504311 C T ALKBH6 Missense_Mutation p.E25K 0.17 deleterious_low_confidence(0.02) benign(0.017) TCGA-IR-A3LH-01 19 36821288 36821288 C G LINC00665 RNA 0.17 TCGA-IR-A3LH-01 19 37865089 37865089 G A ZNF527 5'UTR 0.20 TCGA-IR-A3LH-01 19 37865092 37865092 G A ZNF527 5'UTR 0.19 TCGA-IR-A3LH-01 19 39083961 39083961 C T MAP4K1 Missense_Mutation p.R786K 0.12 tolerated(0.47) benign(0.171) TCGA-IR-A3LH-01 19 39086603 39086603 C G MAP4K1 Missense_Mutation p.D719H 0.14 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 19 39897504 39897504 C T ZFP36 5'UTR 0.10 TCGA-IR-A3LH-01 19 39897512 39897512 C T ZFP36 5'UTR 0.09 TCGA-IR-A3LH-01 19 41627918 41627918 C T CYP2F1 Silent p.I234I 0.49 TCGA-IR-A3LH-01 19 41627930 41627930 C T CYP2F1 Silent p.F238F 0.49 TCGA-IR-A3LH-01 19 41932015 41932015 G C B3GNT8 Silent p.L223L 0.12 TCGA-IR-A3LH-01 19 42584616 42584616 C T ZNF574 Missense_Mutation p.R620W 0.17 deleterious(0) possibly_damaging(0.876) TCGA-IR-A3LH-01 19 42797347 42797347 G A CIC Missense_Mutation p.E1237K 0.42 benign(0.037) TCGA-IR-A3LH-01 19 42827764 42827764 G C TMEM145 Missense_Mutation p.K408N 0.16 deleterious(0.04) possibly_damaging(0.527) TCGA-IR-A3LH-01 19 4283076 4283076 C G SHD Silent p.L143L 0.30 TCGA-IR-A3LH-01 19 42930986 42930986 G C LIPE Missense_Mutation p.L106V 0.10 tolerated_low_confidence(0.2) benign(0.026) TCGA-IR-A3LH-01 19 43979488 43979488 G A PHLDB3 3'UTR 0.52 TCGA-IR-A3LH-01 19 44660768 44660768 G C ZNF234 Missense_Mutation p.G200A 0.37 deleterious(0.01) benign(0.425) TCGA-IR-A3LH-01 19 45684652 45684652 C T BLOC1S3 3'UTR 0.16 TCGA-IR-A3LH-01 19 46095165 46095165 G A GPR4 5'UTR 0.29 TCGA-IR-A3LH-01 19 46268875 46268875 C A SIX5 Nonsense_Mutation p.E702* 0.26 TCGA-IR-A3LH-01 19 46271345 46271345 C G SIX5 Missense_Mutation p.R253P 0.27 deleterious(0.04) benign(0.121) TCGA-IR-A3LH-01 19 46271586 46271586 C A SIX5 Nonsense_Mutation p.E173* 0.32 TCGA-IR-A3LH-01 19 47844929 47844929 C T C5AR2 Silent p.F291F 0.25 TCGA-IR-A3LH-01 19 48981704 48981704 G C CYTH2 Missense_Mutation p.E323Q 0.29 deleterious(0) possibly_damaging(0.885) TCGA-IR-A3LH-01 19 49216253 49216253 C G MAMSTR 3'UTR 0.44 TCGA-IR-A3LH-01 19 49656892 49656892 C T HRC Missense_Mutation p.E535K 0.28 deleterious(0.04) possibly_damaging(0.899) TCGA-IR-A3LH-01 19 49838725 49838725 C G CD37 5'UTR 0.20 TCGA-IR-A3LH-01 19 50758564 50758564 C T MYH14 Missense_Mutation p.S678F 0.17 tolerated(0.19) benign(0.001) TCGA-IR-A3LH-01 19 51017899 51017899 C T ASPDH 5'Flank 0.32 TCGA-IR-A3LH-01 19 51022460 51022460 G A LRRC4B Silent p.I170I 0.18 TCGA-IR-A3LH-01 19 51297070 51297070 G A ACPT Missense_Mutation p.G259R 0.51 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LH-01 19 52272802 52272802 C T FPR2 Silent p.L297L 0.29 TCGA-IR-A3LH-01 19 52819093 52819093 C G ZNF480 Missense_Mutation p.S69C 0.44 tolerated(0.27) benign(0.001) TCGA-IR-A3LH-01 19 53056530 53056534 GAAAG AAAA ZNF808 Frame_Shift_Del p.E121Kfs*12 0.10 TCGA-IR-A3LH-01 19 53611504 53611504 G A ZNF415 3'UTR 0.40 TCGA-IR-A3LH-01 19 53611531 53611531 G C ZNF415 3'UTR 0.47 TCGA-IR-A3LH-01 19 53612192 53612192 G C ZNF415 Nonsense_Mutation p.S369* 0.21 TCGA-IR-A3LH-01 19 53855360 53855360 C G ZNF845 Missense_Mutation p.Q478E 0.16 tolerated(0.71) benign(0.034) TCGA-IR-A3LH-01 19 54573395 54573395 C T TARM1 Silent p.S226S 0.42 TCGA-IR-A3LH-01 19 54783860 54783860 G C LILRB2 Silent p.L47L 0.53 TCGA-IR-A3LH-01 19 55497541 55497541 G C NLRP2 Missense_Mutation p.D742H 0.45 deleterious(0.02) benign(0.043) TCGA-IR-A3LH-01 19 56203149 56203149 C T EPN1 Silent p.F350F 0.13 TCGA-IR-A3LH-01 19 56274041 56274041 G C RFPL4A Missense_Mutation p.D122H 0.06 tolerated(0.55) benign(0.003) TCGA-IR-A3LH-01 19 57956145 57956145 C G ZNF749 Silent p.L543L 0.22 TCGA-IR-A3LH-01 19 58004813 58004813 C G ZNF419 Missense_Mutation p.F297L 0.37 deleterious(0) possibly_damaging(0.892) TCGA-IR-A3LH-01 19 58385113 58385113 C G ZNF814 Missense_Mutation p.E549Q 0.15 deleterious(0.04) benign(0.089) TCGA-IR-A3LH-01 19 6694617 6694617 A C C3 Missense_Mutation p.D993E 0.30 tolerated(0.38) benign(0.002) TCGA-IR-A3LH-01 19 6694622 6694622 C G C3 Missense_Mutation p.E992Q 0.30 deleterious(0) probably_damaging(0.971) TCGA-IR-A3LH-01 19 7529456 7529456 C G ARHGEF18 Missense_Mutation p.F740L 0.31 tolerated(0.56) benign(0.002) TCGA-IR-A3LH-01 19 7584332 7584332 G A ZNF358 Silent p.S68S 0.15 TCGA-IR-A3LH-01 19 8575529 8575529 G C ZNF414 3'UTR 0.14 TCGA-IR-A3LH-01 19 8616752 8616752 C A MYO1F Nonsense_Mutation p.E215* 0.20 TCGA-IR-A3LH-01 19 9076110 9076110 G A MUC16 Missense_Mutation p.S3779F 0.20 unknown(0) TCGA-IR-A3LH-01 1 100152712 100152712 G A PALMD Missense_Mutation p.E161K 0.26 tolerated(0.71) benign(0.107) TCGA-IR-A3LH-01 1 1017588 1017588 G C C1orf159 3'UTR 0.26 TCGA-IR-A3LH-01 1 1018005 1018005 G A C1orf159 3'UTR 0.28 TCGA-IR-A3LH-01 1 109553686 109553686 C T WDR47 Missense_Mutation p.D335N 0.16 tolerated(0.38) benign(0.091) TCGA-IR-A3LH-01 1 109731732 109731732 G A KIAA1324 Missense_Mutation p.E422K 0.13 deleterious(0.04) probably_damaging(0.991) TCGA-IR-A3LH-01 1 110148947 110148947 G C GNAT2 Silent p.V191V 0.25 TCGA-IR-A3LH-01 1 112106482 112106482 C G ADORA3 Missense_Mutation p.L25F 0.15 tolerated_low_confidence(1) benign(0) TCGA-IR-A3LH-01 1 112106579 112106579 C G ADORA3 5'UTR 0.11 TCGA-IR-A3LH-01 1 112539048 112539048 G C RP11-88H9.2 Splice_Site 0.41 TCGA-IR-A3LH-01 1 114438460 114438460 G A AP4B1 Missense_Mutation p.H571Y 0.18 tolerated(0.07) benign(0.044) TCGA-IR-A3LH-01 1 11835573 11835573 G C C1orf167 Silent p.L714L 0.19 TCGA-IR-A3LH-01 1 11835600 11835600 G C C1orf167 Silent p.R723R 0.20 TCGA-IR-A3LH-01 1 118420575 118420575 C G GDAP2 Intron 0.16 TCGA-IR-A3LH-01 1 118644438 118644438 C T SPAG17 Missense_Mutation p.E187K 0.11 tolerated(0.25) possibly_damaging(0.734) TCGA-IR-A3LH-01 1 12004636 12004636 G A PLOD1 Intron 0.15 TCGA-IR-A3LH-01 1 1225898 1225898 C G SCNN1D Missense_Mutation p.R608G 0.22 deleterious(0.04) benign(0.268) TCGA-IR-A3LH-01 1 12343083 12343083 C T VPS13D Missense_Mutation p.L1642F 0.13 probably_damaging(0.981) TCGA-IR-A3LH-01 1 12557624 12557624 G C VPS13D Missense_Mutation p.E4245Q 0.35 benign(0.086) TCGA-IR-A3LH-01 1 1273752 1273752 C T DVL1 Silent p.R443R 0.18 TCGA-IR-A3LH-01 1 1418033 1418033 G C ATAD3B Intron 0.18 TCGA-IR-A3LH-01 1 145326060 145326060 G A NBPF10 Silent p.Q1311Q 0.22 TCGA-IR-A3LH-01 1 149898637 149898637 C G SF3B4 Missense_Mutation p.E113Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LH-01 1 149898700 149898700 G A SF3B4 Missense_Mutation p.H92Y 0.14 deleterious(0.01) possibly_damaging(0.579) TCGA-IR-A3LH-01 1 150917569 150917569 C T SETDB1 Silent p.V375V 0.38 TCGA-IR-A3LH-01 1 151107724 151107724 C T SEMA6C Missense_Mutation p.E499K 0.19 tolerated(0.21) possibly_damaging(0.486) TCGA-IR-A3LH-01 1 151108110 151108110 C G SEMA6C Missense_Mutation p.E464Q 0.08 tolerated(0.08) possibly_damaging(0.607) TCGA-IR-A3LH-01 1 152328793 152328793 G C FLG2 Missense_Mutation p.S490C 0.23 unknown(0) TCGA-IR-A3LH-01 1 153065768 153065768 C G SPRR2E 3'UTR 0.18 TCGA-IR-A3LH-01 1 153634542 153634542 T C ILF2 3'UTR 0.37 TCGA-IR-A3LH-01 1 154076644 154076644 G A NUP210L Missense_Mutation p.H555Y 0.19 tolerated(0.05) benign(0.136) TCGA-IR-A3LH-01 1 154562688 154562688 G C ADAR Nonsense_Mutation p.S823* 0.17 TCGA-IR-A3LH-01 1 154961012 154961012 G A FLAD1 Missense_Mutation p.M268I 0.11 tolerated(0.14) benign(0) TCGA-IR-A3LH-01 1 155023353 155023353 C G DCST1 3'UTR 0.19 TCGA-IR-A3LH-01 1 155059723 155059723 C T EFNA3 3'UTR 0.15 TCGA-IR-A3LH-01 1 155100407 155100407 C G EFNA1 5'UTR 0.24 TCGA-IR-A3LH-01 1 155156672 155156672 C T TRIM46 3'UTR 0.24 TCGA-IR-A3LH-01 1 155235704 155235704 C T CLK2 Missense_Mutation p.E293K 0.34 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LH-01 1 155718144 155718144 C G GON4L 3'Flank 0.23 TCGA-IR-A3LH-01 1 156238096 156238096 G C SMG5 Missense_Mutation p.S275C 0.20 deleterious(0) possibly_damaging(0.84) TCGA-IR-A3LH-01 1 156278946 156278946 G A CCT3 3'UTR 0.23 TCGA-IR-A3LH-01 1 156884502 156884502 C G PEAR1 Nonsense_Mutation p.S1009* 0.31 TCGA-IR-A3LH-01 1 157773648 157773648 C T FCRL1 Silent p.Q102Q 0.12 TCGA-IR-A3LH-01 1 159002419 159002419 G A IFI16 Missense_Mutation p.E423K 0.19 tolerated(0.5) possibly_damaging(0.828) TCGA-IR-A3LH-01 1 159284332 159284332 G C OR10J3 Missense_Mutation p.L40V 0.19 deleterious(0.02) benign(0.32) TCGA-IR-A3LH-01 1 159810630 159810630 G C C1orf204 Missense_Mutation p.P157A 0.17 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-IR-A3LH-01 1 159857691 159857691 G A CCDC19 Silent p.L176L 0.48 TCGA-IR-A3LH-01 1 159899721 159899721 G A IGSF9 Silent p.F703F 0.18 TCGA-IR-A3LH-01 1 160319892 160319892 C T NCSTN Intron 0.34 TCGA-IR-A3LH-01 1 161993223 161993223 G C OLFML2B 5'UTR 0.15 TCGA-IR-A3LH-01 1 162353381 162353381 G A C1orf226 Missense_Mutation p.E286K 0.25 deleterious(0.01) possibly_damaging(0.641) TCGA-IR-A3LH-01 1 162724487 162724487 C T DDR2 Silent p.L87L 0.11 TCGA-IR-A3LH-01 1 16272682 16272682 C G ZBTB17 Missense_Mutation p.E168Q 0.39 tolerated_low_confidence(0.15) probably_damaging(0.968) TCGA-IR-A3LH-01 1 163046287 163046287 C T RGS4 3'UTR 0.20 TCGA-IR-A3LH-01 1 16459997 16459997 G C EPHA2 Missense_Mutation p.R615G 0.14 deleterious(0.01) possibly_damaging(0.774) TCGA-IR-A3LH-01 1 1688672 1688672 C G NADK Missense_Mutation p.R218T 0.15 deleterious(0.02) benign(0.109) TCGA-IR-A3LH-01 1 169435091 169435091 G A SLC19A2 Missense_Mutation p.S497L 0.27 deleterious_low_confidence(0.01) benign(0.146) TCGA-IR-A3LH-01 1 17085192 17085192 G A MST1L RNA 0.17 TCGA-IR-A3LH-01 1 172366306 172366306 C G DNM3 Intron 0.20 TCGA-IR-A3LH-01 1 17270753 17270753 G A CROCC Missense_Mutation p.R656Q 0.14 benign(0.209) TCGA-IR-A3LH-01 1 17326512 17326512 G A ATP13A2 Silent p.L345L 0.41 TCGA-IR-A3LH-01 1 17326795 17326795 G C ATP13A2 Missense_Mutation p.L285V 0.24 deleterious(0) possibly_damaging(0.898) TCGA-IR-A3LH-01 1 174969140 174969140 G A CACYBP 5'UTR 0.18 TCGA-IR-A3LH-01 1 17601261 17601261 C T PADI3 Silent p.L429L 0.15 TCGA-IR-A3LH-01 1 17681089 17681089 C T PADI4 Missense_Mutation p.S406F 0.19 deleterious(0.02) probably_damaging(0.975) TCGA-IR-A3LH-01 1 17681157 17681157 C G PADI4 Missense_Mutation p.L429V 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LH-01 1 176838073 176838073 G A ASTN1 Missense_Mutation p.S1185F 0.15 deleterious(0) possibly_damaging(0.748) TCGA-IR-A3LH-01 1 178269208 178269208 G A RASAL2 Missense_Mutation p.E138K 0.21 deleterious(0.01) probably_damaging(0.943) TCGA-IR-A3LH-01 1 178777210 178777210 G C RALGPS2 Missense_Mutation p.E82Q 0.22 deleterious(0.01) possibly_damaging(0.887) TCGA-IR-A3LH-01 1 182353749 182353749 C T GLUL Missense_Mutation p.E305K 0.21 deleterious(0.01) benign(0.145) TCGA-IR-A3LH-01 1 182359958 182359958 C T GLUL 5'UTR 0.13 TCGA-IR-A3LH-01 1 183559624 183559624 C T NCF2 5'UTR 0.15 TCGA-IR-A3LH-01 1 183595671 183595671 G A ARPC5 3'UTR 0.13 TCGA-IR-A3LH-01 1 186876127 186876127 G A PLA2G4A Missense_Mutation p.E137K 0.22 tolerated(0.22) benign(0.012) TCGA-IR-A3LH-01 1 193044963 193044963 G C TROVE2 Silent p.V198V 0.12 TCGA-IR-A3LH-01 1 19436940 19436940 C T UBR4 Missense_Mutation p.E3971K 0.33 possibly_damaging(0.899) TCGA-IR-A3LH-01 1 200012937 200012937 G A NR5A2 Missense_Mutation p.E80K 0.20 tolerated(0.2) benign(0.03) TCGA-IR-A3LH-01 1 200618310 200618310 G A DDX59 Silent p.C453C 0.16 TCGA-IR-A3LH-01 1 201016290 201016290 C G CACNA1S Missense_Mutation p.E1541Q 0.24 deleterious(0.02) probably_damaging(1) TCGA-IR-A3LH-01 1 201749586 201749586 G A NAV1 Missense_Mutation p.D422N 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-IR-A3LH-01 1 203770893 203770893 C G ZC3H11A 5'UTR 0.16 TCGA-IR-A3LH-01 1 207086294 207086294 G A FAIM3 Missense_Mutation p.S156F 0.18 deleterious(0) possibly_damaging(0.51) TCGA-IR-A3LH-01 1 209961873 209961873 G C IRF6 Missense_Mutation p.I432M 0.26 tolerated(0.88) benign(0.329) TCGA-IR-A3LH-01 1 2116133 2116133 G A PRKCZ Missense_Mutation p.D563N 0.21 tolerated(0.08) benign(0.15) TCGA-IR-A3LH-01 1 212190329 212190329 C T INTS7 Silent p.R136R 0.29 TCGA-IR-A3LH-01 1 22050544 22050544 C G USP48 Missense_Mutation p.D499H 0.19 deleterious(0.02) benign(0.028) TCGA-IR-A3LH-01 1 22174210 22174210 C T HSPG2 Missense_Mutation p.R2666H 0.12 probably_damaging(0.996) TCGA-IR-A3LH-01 1 22201113 22201113 C T HSPG2 Missense_Mutation p.C1175Y 0.20 probably_damaging(1) TCGA-IR-A3LH-01 1 222839039 222839039 C T MIA3 3'UTR 0.44 TCGA-IR-A3LH-01 1 223285705 223285705 G C TLR5 Missense_Mutation p.F223L 0.25 tolerated(0.12) possibly_damaging(0.698) TCGA-IR-A3LH-01 1 223285920 223285920 G C TLR5 Missense_Mutation p.L152V 0.33 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 1 224621580 224621580 G A WDR26 Silent p.V76V 0.23 TCGA-IR-A3LH-01 1 225393772 225393772 C G DNAH14 Missense_Mutation p.A1599G 0.22 deleterious(0.05) benign(0.364) TCGA-IR-A3LH-01 1 225394691 225394691 G T DNAH14 Nonsense_Mutation p.E1643* 0.21 TCGA-IR-A3LH-01 1 225394807 225394807 G A DNAH14 Silent p.R1681R 0.21 TCGA-IR-A3LH-01 1 225394916 225394916 G C DNAH14 Missense_Mutation p.E1718Q 0.13 tolerated(0.19) benign(0.001) TCGA-IR-A3LH-01 1 226784513 226784513 C G C1orf95 Silent p.V71V 0.29 TCGA-IR-A3LH-01 1 226822070 226822070 C A ITPKB 3'UTR 0.23 TCGA-IR-A3LH-01 1 227921778 227921778 G C SNAP47 5'Flank 0.20 TCGA-IR-A3LH-01 1 22817950 22817950 C G ZBTB40 Nonsense_Mutation p.S252* 0.25 TCGA-IR-A3LH-01 1 22920082 22920082 C G EPHA8 Silent p.L502L 0.22 TCGA-IR-A3LH-01 1 230846455 230846455 C T AGT Missense_Mutation p.E48K 0.24 tolerated(1) benign(0.002) TCGA-IR-A3LH-01 1 23399797 23399797 C T KDM1A Silent p.L545L 0.19 TCGA-IR-A3LH-01 1 23411915 23411915 G C LUZP1 3'UTR 0.15 TCGA-IR-A3LH-01 1 235964185 235964185 G C LYST Missense_Mutation p.L1309V 0.22 tolerated(0.24) possibly_damaging(0.864) TCGA-IR-A3LH-01 1 235964366 235964366 G A LYST Silent p.F1248F 0.17 TCGA-IR-A3LH-01 1 23636896 23636896 G A HNRNPR 3'UTR 0.31 TCGA-IR-A3LH-01 1 237025533 237025533 C G MTR Intron 0.21 TCGA-IR-A3LH-01 1 237765394 237765394 G C RYR2 Missense_Mutation p.E1556Q 0.29 probably_damaging(1) TCGA-IR-A3LH-01 1 2451773 2451773 G A PANK4 Silent p.L229L 0.28 TCGA-IR-A3LH-01 1 248058947 248058947 G T OR2W3 Missense_Mutation p.R20L 0.19 deleterious(0.04) benign(0.314) TCGA-IR-A3LH-01 1 248059405 248059405 G C OR2W3 Missense_Mutation p.E173Q 0.21 tolerated(0.55) benign(0.016) TCGA-IR-A3LH-01 1 26513963 26513963 G A CNKSR1 Missense_Mutation p.D482N 0.22 deleterious(0) possibly_damaging(0.832) TCGA-IR-A3LH-01 1 26900876 26900876 C T RPS6KA1 3'Flank 0.21 TCGA-IR-A3LH-01 1 28562908 28562908 G A ATPIF1 Missense_Mutation p.E42K 0.23 deleterious(0) benign(0.253) TCGA-IR-A3LH-01 1 28564291 28564291 G C ATPIF1 Intron 0.16 TCGA-IR-A3LH-01 1 28564328 28564328 G A ATPIF1 Intron 0.18 TCGA-IR-A3LH-01 1 29185700 29185700 C G OPRD1 Silent p.V154V 0.13 TCGA-IR-A3LH-01 1 31404410 31404410 C G PUM1 3'Flank 0.18 TCGA-IR-A3LH-01 1 33549552 33549552 C T ADC Intron 0.10 TCGA-IR-A3LH-01 1 35920058 35920058 G C KIAA0319L Missense_Mutation p.S562C 0.20 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 1 36043012 36043012 G A TFAP2E Intron 0.28 TCGA-IR-A3LH-01 1 36563499 36563499 C T COL8A2 Missense_Mutation p.D595N 0.15 tolerated(0.18) possibly_damaging(0.617) TCGA-IR-A3LH-01 1 36564455 36564455 C G COL8A2 Missense_Mutation p.G276A 0.22 deleterious(0) unknown(0) TCGA-IR-A3LH-01 1 38280602 38280602 G T MTF1 3'UTR 0.29 TCGA-IR-A3LH-01 1 38289467 38289467 G C MTF1 Silent p.L362L 0.17 TCGA-IR-A3LH-01 1 39340261 39340261 G C GJA9 Missense_Mutation p.L504V 0.22 tolerated(0.54) benign(0.001) TCGA-IR-A3LH-01 1 39340415 39340415 G C GJA9 Silent p.V452V 0.25 TCGA-IR-A3LH-01 1 39751356 39751356 C G MACF1 Silent p.L483L 0.40 TCGA-IR-A3LH-01 1 39877348 39877348 G C KIAA0754 Missense_Mutation p.E335Q 0.24 possibly_damaging(0.607) TCGA-IR-A3LH-01 1 40125018 40125018 C G NT5C1A Missense_Mutation p.K294N 0.17 deleterious(0.02) possibly_damaging(0.479) TCGA-IR-A3LH-01 1 45293982 45293982 G C PTCH2 Silent p.L565L 0.19 TCGA-IR-A3LH-01 1 46546420 46546420 G A PIK3R3 Missense_Mutation p.L37F 0.20 deleterious(0) benign(0.319) TCGA-IR-A3LH-01 1 46746968 46746968 C T LRRC41 Missense_Mutation p.D529N 0.21 deleterious(0.01) possibly_damaging(0.728) TCGA-IR-A3LH-01 1 47078756 47078756 C T MOB3C Missense_Mutation p.E132K 0.25 deleterious(0) benign(0.292) TCGA-IR-A3LH-01 1 47278271 47278271 C T CYP4B1 Silent p.F157F 0.30 TCGA-IR-A3LH-01 1 52226407 52226407 G A OSBPL9 Missense_Mutation p.E220K 0.20 tolerated(0.8) benign(0.15) TCGA-IR-A3LH-01 1 52889580 52889580 G A ZCCHC11 3'UTR 0.27 TCGA-IR-A3LH-01 1 53544323 53544323 C T PODN Missense_Mutation p.R429C 0.32 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 1 54387427 54387427 G C HSPB11 Missense_Mutation p.S111C 0.44 tolerated(0.05) possibly_damaging(0.559) TCGA-IR-A3LH-01 1 55078239 55078239 C G FAM151A Missense_Mutation p.Q240H 0.23 deleterious(0) probably_damaging(0.98) TCGA-IR-A3LH-01 1 55352682 55352682 G C DHCR24 Silent p.L37L 0.21 TCGA-IR-A3LH-01 1 57161821 57161821 C G PRKAA2 Missense_Mutation p.I259M 0.25 tolerated(0.05) probably_damaging(0.986) TCGA-IR-A3LH-01 1 59249686 59249686 C A JUN 5'UTR 0.26 TCGA-IR-A3LH-01 1 60463473 60463473 C T C1orf87 Missense_Mutation p.E430K 0.23 tolerated(0.44) benign(0.007) TCGA-IR-A3LH-01 1 66036294 66036294 C G LEPR Missense_Mutation p.S60W 0.23 tolerated(0.22) benign(0.002) TCGA-IR-A3LH-01 1 76397629 76397629 C T ASB17 Silent p.K116K 0.29 TCGA-IR-A3LH-01 1 77557973 77557973 G C PIGK 3'UTR 0.19 TCGA-IR-A3LH-01 1 7798111 7798111 G A CAMTA1 Missense_Mutation p.E1251K 0.16 deleterious_low_confidence(0) benign(0.312) TCGA-IR-A3LH-01 1 82372833 82372833 G A LPHN2 Missense_Mutation p.D69N 0.14 tolerated(0.09) possibly_damaging(0.722) TCGA-IR-A3LH-01 1 89637576 89637576 C G GBP7 Missense_Mutation p.E15Q 0.17 deleterious(0.02) benign(0.37) TCGA-IR-A3LH-01 1 89889986 89889986 G C GBP1P1 RNA 0.21 TCGA-IR-A3LH-01 1 90152110 90152110 G C LRRC8C Silent p.V26V 0.14 TCGA-IR-A3LH-01 1 91784910 91784910 C G HFM1 Missense_Mutation p.D874H 0.27 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 1 92647526 92647526 C T KIAA1107 Missense_Mutation p.S991F 0.31 deleterious(0) possibly_damaging(0.739) TCGA-IR-A3LH-01 1 93672937 93672937 G T CCDC18 Missense_Mutation p.K451N 0.33 tolerated(0.26) benign(0.034) TCGA-IR-A3LH-01 1 93827559 93827559 C G DR1 3'UTR 0.29 TCGA-IR-A3LH-01 1 94461721 94461721 C A ABCA4 Nonsense_Mutation p.E2254* 0.27 TCGA-IR-A3LH-01 20 10618677 10618677 G A JAG1 3'UTR 0.23 TCGA-IR-A3LH-01 20 1146841 1146841 G C PSMF1 3'UTR 0.12 TCGA-IR-A3LH-01 20 17462226 17462226 C G PCSK2 Intron 0.33 TCGA-IR-A3LH-01 20 17930840 17930840 C T SNX5 Missense_Mutation p.D243N 0.23 tolerated(0.29) benign(0.143) TCGA-IR-A3LH-01 20 18451257 18451257 G C POLR3F Intron 0.19 TCGA-IR-A3LH-01 20 21284093 21284093 C T XRN2 Silent p.V19V 0.33 TCGA-IR-A3LH-01 20 22381413 22381413 G T RP5-1004I9.1 RNA 0.19 TCGA-IR-A3LH-01 20 23030293 23030293 G T THBD 5'UTR 0.22 TCGA-IR-A3LH-01 20 23375564 23375564 C G NAPB Missense_Mutation p.E139Q 0.20 deleterious(0.04) probably_damaging(0.995) TCGA-IR-A3LH-01 20 23401954 23401954 C T NAPB Missense_Mutation p.R29Q 0.15 deleterious(0.02) benign(0.052) TCGA-IR-A3LH-01 20 280405 280405 G C ZCCHC3 3'UTR 0.29 TCGA-IR-A3LH-01 20 30585105 30585105 C T XKR7 Missense_Mutation p.R529C 0.22 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 20 30659515 30659515 C G HCK Nonsense_Mutation p.S38* 0.15 TCGA-IR-A3LH-01 20 31023127 31023127 C G ASXL1 Nonsense_Mutation p.S871* 0.22 TCGA-IR-A3LH-01 20 31656683 31656683 C G BPIFB3 Silent p.L351L 0.12 TCGA-IR-A3LH-01 20 33338291 33338291 C G NCOA6 Missense_Mutation p.Q569H 0.25 probably_damaging(0.993) TCGA-IR-A3LH-01 20 334278 334278 G A NRSN2 Silent p.%3D 0.13 TCGA-IR-A3LH-01 20 33590451 33590451 G C TRPC4AP 3'UTR 0.15 TCGA-IR-A3LH-01 20 33734979 33734979 G A EDEM2 Missense_Mutation p.S28F 0.23 deleterious(0.01) unknown(0) TCGA-IR-A3LH-01 20 34022112 34022112 C G GDF5 Missense_Mutation p.K367N 0.08 tolerated(0.15) benign(0.175) TCGA-IR-A3LH-01 20 34022789 34022789 C T GDF5OS 3'UTR 0.14 TCGA-IR-A3LH-01 20 34022866 34022866 C G GDF5OS 3'UTR 0.12 TCGA-IR-A3LH-01 20 34116570 34116570 T A C20orf173 Missense_Mutation p.S150C 0.36 deleterious(0) possibly_damaging(0.518) TCGA-IR-A3LH-01 20 34116651 34116651 G C C20orf173 Missense_Mutation p.P123A 0.58 deleterious(0.02) possibly_damaging(0.864) TCGA-IR-A3LH-01 20 34116795 34116795 G A C20orf173 Intron 0.47 TCGA-IR-A3LH-01 20 34116809 34116809 G T C20orf173 Intron 0.48 TCGA-IR-A3LH-01 20 34136939 34136939 G A ERGIC3 Intron 0.46 TCGA-IR-A3LH-01 20 36151834 36151834 C T NNAT 3'UTR 0.13 TCGA-IR-A3LH-01 20 44582415 44582415 G A ZNF335 Missense_Mutation p.A872V 0.20 deleterious_low_confidence(0.02) benign(0.171) TCGA-IR-A3LH-01 20 4680803 4680803 G A PRNP 3'UTR 0.30 TCGA-IR-A3LH-01 20 4705251 4705251 C T PRND Silent p.F18F 0.24 TCGA-IR-A3LH-01 20 47862974 47862974 C G ZNFX1 3'UTR 0.30 TCGA-IR-A3LH-01 20 47871106 47871106 C G ZNFX1 Missense_Mutation p.R962T 0.24 deleterious(0) probably_damaging(0.938) TCGA-IR-A3LH-01 20 49368723 49368723 C G PARD6B 3'UTR 0.17 TCGA-IR-A3LH-01 20 54572842 54572842 C T CBLN4 3'UTR 0.17 TCGA-IR-A3LH-01 20 54824520 54824520 C T MC3R Silent p.Y207Y 0.16 TCGA-IR-A3LH-01 20 57571827 57571827 G C CTSZ Missense_Mutation p.A223G 0.08 tolerated(0.06) benign(0) TCGA-IR-A3LH-01 20 58452496 58452496 C G SYCP2 Missense_Mutation p.E1032Q 0.11 deleterious(0.01) probably_damaging(0.957) TCGA-IR-A3LH-01 20 58520067 58520067 G A FAM217B Missense_Mutation p.E357K 0.35 deleterious(0.01) benign(0.047) TCGA-IR-A3LH-01 20 61143780 61143780 C T C20orf166 5'Flank 0.12 TCGA-IR-A3LH-01 20 62377716 62377716 G A ZBTB46 3'UTR 0.40 TCGA-IR-A3LH-01 20 62590776 62590776 G A ZNF512B 3'UTR 0.28 TCGA-IR-A3LH-01 20 62737876 62737876 C T NPBWR2 Silent p.A103A 0.40 TCGA-IR-A3LH-01 20 8769323 8769323 G T PLCB1 Nonsense_Mutation p.E1078* 0.12 TCGA-IR-A3LH-01 21 34968110 34968110 G C CRYZL1 Silent p.L277L 0.24 TCGA-IR-A3LH-01 21 37617942 37617942 G A DOPEY2 Missense_Mutation p.E1222K 0.22 deleterious(0.04) benign(0.189) TCGA-IR-A3LH-01 21 38886750 38886750 G A DYRK1A 3'Flank 0.26 TCGA-IR-A3LH-01 21 40568180 40568180 C G BRWD1 Intron 0.27 TCGA-IR-A3LH-01 21 43704687 43704687 C A ABCG1 Missense_Mutation p.S251Y 0.16 deleterious(0) possibly_damaging(0.897) TCGA-IR-A3LH-01 21 43704738 43704744 CCATCAT GCATTA ABCG1 Frame_Shift_Del p.S268Cfs*23 0.18 TCGA-IR-A3LH-01 21 45994648 45994648 C G KRTAP10-4 Nonsense_Mutation p.S338* 0.25 TCGA-IR-A3LH-01 21 47532338 47532338 C G COL6A2 Silent p.L187L 0.24 TCGA-IR-A3LH-01 21 47860893 47860893 G A PCNT Missense_Mutation p.M3173I 0.17 benign(0.322) TCGA-IR-A3LH-01 22 19121936 19121936 C T DGCR14 Missense_Mutation p.V402M 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-IR-A3LH-01 22 19122626 19122626 C T DGCR14 Silent p.K366K 0.18 TCGA-IR-A3LH-01 22 19122634 19122634 C T DGCR14 Missense_Mutation p.A364T 0.19 tolerated(0.09) probably_damaging(0.938) TCGA-IR-A3LH-01 22 22677199 22677199 C T IGLV1-51 Missense_Mutation p.S76L 0.35 deleterious(0.02) possibly_damaging(0.794) TCGA-IR-A3LH-01 22 24176441 24176441 G C SMARCB1 3'UTR 0.18 TCGA-IR-A3LH-01 22 24656996 24656996 C G POM121L9P RNA 0.13 TCGA-IR-A3LH-01 22 24984193 24984193 C G FAM211B Missense_Mutation p.K137N 0.15 deleterious(0) possibly_damaging(0.451) TCGA-IR-A3LH-01 22 26688508 26688508 G A SEZ6L Silent p.A77A 0.16 TCGA-IR-A3LH-01 22 30165994 30165994 G C UQCR10 3'UTR 0.20 TCGA-IR-A3LH-01 22 31283450 31283450 G T OSBP2 Missense_Mutation p.S382I 0.24 deleterious(0.04) probably_damaging(0.961) TCGA-IR-A3LH-01 22 31942899 31942899 G A SFI1 Missense_Mutation p.E131K 0.19 deleterious(0.03) benign(0.125) TCGA-IR-A3LH-01 22 36691588 36691588 C A MYH9 Missense_Mutation p.D1150Y 0.24 probably_damaging(0.987) TCGA-IR-A3LH-01 22 36691764 36691764 C T MYH9 Splice_Site p.X1091_splice 0.39 TCGA-IR-A3LH-01 22 36696217 36696217 C G MYH9 Missense_Mutation p.E978Q 0.21 possibly_damaging(0.623) TCGA-IR-A3LH-01 22 36744962 36744962 G C MYH9 Nonsense_Mutation p.S107* 0.22 TCGA-IR-A3LH-01 22 36745184 36745184 C T MYH9 Nonsense_Mutation p.W33* 0.21 TCGA-IR-A3LH-01 22 36892146 36892146 C T FOXRED2 Missense_Mutation p.E498K 0.22 deleterious(0) possibly_damaging(0.607) TCGA-IR-A3LH-01 22 37581360 37581360 C G C1QTNF6 Missense_Mutation p.E63Q 0.16 tolerated(0.52) benign(0.067) TCGA-IR-A3LH-01 22 38087189 38087189 C T NOL12 Missense_Mutation p.S163F 0.15 deleterious(0) possibly_damaging(0.653) TCGA-IR-A3LH-01 22 38259338 38259338 G A EIF3L Missense_Mutation p.E189K 0.31 deleterious(0) probably_damaging(0.973) TCGA-IR-A3LH-01 22 38349778 38349778 G A POLR2F 5'UTR 0.24 TCGA-IR-A3LH-01 22 38692474 38692474 C T CSNK1E Intron 0.35 TCGA-IR-A3LH-01 22 40673089 40673089 C G TNRC6B Silent p.L1050L 0.12 TCGA-IR-A3LH-01 22 41257347 41257347 C G DNAJB7 Missense_Mutation p.E218Q 0.23 tolerated(1) benign(0.291) TCGA-IR-A3LH-01 22 42159295 42159295 C G MEI1 Missense_Mutation p.I746M 0.25 tolerated(0.06) benign(0.165) TCGA-IR-A3LH-01 22 42605803 42605803 C T TCF20 Missense_Mutation p.E1837K 0.25 benign(0.379) TCGA-IR-A3LH-01 22 43594526 43594526 C T SCUBE1 3'UTR 0.20 TCGA-IR-A3LH-01 22 45580467 45580467 G C NUP50 Missense_Mutation p.L446F 0.21 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 22 45580493 45580493 C T NUP50 Missense_Mutation p.A455V 0.22 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 22 45580731 45580731 G C NUP50 3'UTR 0.18 TCGA-IR-A3LH-01 22 46760469 46760469 C T CELSR1 Missense_Mutation p.D2907N 0.09 tolerated(0.14) benign(0.25) TCGA-IR-A3LH-01 22 50599221 50599221 G A MOV10L1 Silent p.L1143L 0.23 TCGA-IR-A3LH-01 22 50657019 50657019 C T TUBGCP6 Missense_Mutation p.E1618K 0.15 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LH-01 22 50893488 50893488 G C SBF1 Missense_Mutation p.F1546L 0.20 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LH-01 22 51182581 51182581 C T ACR Nonsense_Mutation p.Q220* 0.19 TCGA-IR-A3LH-01 2 106015889 106015889 G A FHL2 5'Flank 0.25 TCGA-IR-A3LH-01 2 109109215 109109215 C T GCC2 Silent p.L1472L 0.26 TCGA-IR-A3LH-01 2 120385242 120385242 C T PCDP1 Silent p.F510F 0.26 TCGA-IR-A3LH-01 2 128088060 128088060 G A MAP3K2 Nonsense_Mutation p.Q96* 0.20 TCGA-IR-A3LH-01 2 128464072 128464072 G C WDR33 Missense_Mutation p.S1279C 0.32 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-IR-A3LH-01 2 128775373 128775373 G C SAP130 Missense_Mutation p.Q103E 0.25 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-IR-A3LH-01 2 130910400 130910400 G C SMPD4 Missense_Mutation p.R777G 0.19 deleterious(0) possibly_damaging(0.742) TCGA-IR-A3LH-01 2 131797983 131797983 G T ARHGEF4 Silent p.L358L 0.17 TCGA-IR-A3LH-01 2 136499524 136499524 C T UBXN4 Missense_Mutation p.P9S 0.41 deleterious(0.02) benign(0.024) TCGA-IR-A3LH-01 2 136545803 136545803 C T LCT 3'UTR 0.31 TCGA-IR-A3LH-01 2 136547286 136547286 C T LCT Silent p.E1806E 0.23 TCGA-IR-A3LH-01 2 152422319 152422319 C G NEB Missense_Mutation p.D6058H 0.20 probably_damaging(1) TCGA-IR-A3LH-01 2 15555687 15555687 G A NBAS Nonsense_Mutation p.Q974* 0.17 TCGA-IR-A3LH-01 2 158390054 158390054 C T ACVR1C 3'UTR 0.19 TCGA-IR-A3LH-01 2 166226734 166226734 G A SCN2A Silent p.L1258L 0.11 TCGA-IR-A3LH-01 2 166845738 166845738 T C SCN1A 3'UTR 0.18 TCGA-IR-A3LH-01 2 168067270 168067270 G A XIRP2 Silent p.E196E 0.16 TCGA-IR-A3LH-01 2 170097642 170097642 C T LRP2 Missense_Mutation p.D1301N 0.16 probably_damaging(1) TCGA-IR-A3LH-01 2 174074485 174074485 C G MLTK Nonsense_Mutation p.S258* 0.29 TCGA-IR-A3LH-01 2 174232543 174232543 C G CDCA7 3'UTR 0.19 TCGA-IR-A3LH-01 2 175613442 175613442 C T CHRNA1 Missense_Mutation p.D395N 0.20 tolerated(0.19) benign(0.371) TCGA-IR-A3LH-01 2 178098808 178098808 C A NFE2L2 Missense_Mutation p.E79D 0.28 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 2 179409108 179409108 C G TTN Missense_Mutation p.E31950Q 0.26 TCGA-IR-A3LH-01 2 179418668 179418668 C A TTN Nonsense_Mutation p.E29724* 0.24 TCGA-IR-A3LH-01 2 179444759 179444759 C G TTN Missense_Mutation p.E22419Q 0.16 TCGA-IR-A3LH-01 2 179542477 179542477 C T TTN Missense_Mutation p.E11388K 0.22 TCGA-IR-A3LH-01 2 179542501 179542501 C G TTN Missense_Mutation p.E11380Q 0.22 TCGA-IR-A3LH-01 2 179592954 179592954 C T TTN Missense_Mutation p.E6533K 0.19 TCGA-IR-A3LH-01 2 179666953 179666953 G A TTN Silent p.A69A 0.16 TCGA-IR-A3LH-01 2 187542020 187542020 C T ITGAV 3'UTR 0.16 TCGA-IR-A3LH-01 2 1895843 1895843 A G MYT1L Missense_Mutation p.L748P 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-IR-A3LH-01 2 190611212 190611212 G C ANKAR Missense_Mutation p.K1388N 0.22 tolerated_low_confidence(0.06) benign(0.004) TCGA-IR-A3LH-01 2 190670551 190670551 G A PMS1 Intron 0.18 TCGA-IR-A3LH-01 2 192711513 192711513 T A SDPR Missense_Mutation p.I47F 0.18 deleterious(0.01) benign(0.39) TCGA-IR-A3LH-01 2 196600202 196600202 C G SLC39A10 3'UTR 0.32 TCGA-IR-A3LH-01 2 197183690 197183690 C G HECW2 Missense_Mutation p.D642H 0.16 deleterious_low_confidence(0.03) benign(0.436) TCGA-IR-A3LH-01 2 201354777 201354777 G A KCTD18 3'UTR 0.26 TCGA-IR-A3LH-01 2 202360633 202360633 G C ALS2CR11 Missense_Mutation p.F522L 0.31 tolerated(0.38) benign(0.003) TCGA-IR-A3LH-01 2 202901050 202901050 C G FZD7 Missense_Mutation p.F560L 0.14 tolerated(0.21) probably_damaging(0.951) TCGA-IR-A3LH-01 2 203084816 203084816 G C SUMO1 Nonsense_Mutation p.S9* 0.16 TCGA-IR-A3LH-01 2 204000956 204000956 C G NBEAL1 Missense_Mutation p.S1428C 0.31 deleterious(0) possibly_damaging(0.738) TCGA-IR-A3LH-01 2 20458120 20458120 C G PUM2 Missense_Mutation p.D790H 0.19 deleterious(0.05) probably_damaging(0.98) TCGA-IR-A3LH-01 2 209138367 209138367 C G PIKFYVE Missense_Mutation p.Q78E 0.28 tolerated(1) benign(0.017) TCGA-IR-A3LH-01 2 210640689 210640689 C A UNC80 Missense_Mutation p.S73Y 0.33 probably_damaging(0.965) TCGA-IR-A3LH-01 2 218924813 218924813 G T CXCR2P1 RNA 0.25 TCGA-IR-A3LH-01 2 219227621 219227621 C A C2orf62 Missense_Mutation p.T209N 0.24 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LH-01 2 219330900 219330900 C A USP37 Splice_Site p.X767_splice 0.13 TCGA-IR-A3LH-01 2 220102371 220102371 C A GLB1L Missense_Mutation p.V518L 0.18 tolerated(0.14) benign(0.09) TCGA-IR-A3LH-01 2 220354197 220354197 C G SPEG Silent p.V2819V 0.27 TCGA-IR-A3LH-01 2 224629953 224629953 C T AP1S3 Missense_Mutation p.E136K 0.23 tolerated(0.26) possibly_damaging(0.654) TCGA-IR-A3LH-01 2 225365091 225365091 C T CUL3 Silent p.E533E 0.11 TCGA-IR-A3LH-01 2 227600246 227600246 C G IRS1 3'UTR 0.25 TCGA-IR-A3LH-01 2 228389568 228389568 C T AGFG1 Missense_Mutation p.P211S 0.33 deleterious(0.04) benign(0.035) TCGA-IR-A3LH-01 2 231115695 231115695 G A SP140 Splice_Site p.X326_splice 0.21 TCGA-IR-A3LH-01 2 231368918 231368918 G A SP100 Missense_Mutation p.D595N 0.15 tolerated(0.05) possibly_damaging(0.908) TCGA-IR-A3LH-01 2 231368920 231368920 T A SP100 Missense_Mutation p.D595E 0.15 tolerated(0.22) possibly_damaging(0.866) TCGA-IR-A3LH-01 2 231368945 231368945 G A SP100 Missense_Mutation p.E604K 0.17 tolerated(0.45) benign(0.008) TCGA-IR-A3LH-01 2 233944076 233944076 C T INPP5D Silent p.L56L 0.23 TCGA-IR-A3LH-01 2 234601815 234601815 G A UGT1A6 Silent p.E55E 0.20 TCGA-IR-A3LH-01 2 234873287 234873287 C G TRPM8 Missense_Mutation p.L589V 0.24 tolerated(0.47) benign(0.254) TCGA-IR-A3LH-01 2 234967524 234967524 C T SPP2 Silent p.F85F 0.22 TCGA-IR-A3LH-01 2 241513702 241513702 G A RNPEPL1 Missense_Mutation p.E140K 0.23 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LH-01 2 241622255 241622255 C T AQP12B 5'UTR 0.18 TCGA-IR-A3LH-01 2 241689949 241689949 C G KIF1A Silent p.L958L 0.24 TCGA-IR-A3LH-01 2 242004841 242004841 C T SNED1 Missense_Mutation p.S947F 0.21 deleterious(0) probably_damaging(0.932) TCGA-IR-A3LH-01 2 26022384 26022384 C T ASXL2 Silent p.V91V 0.14 TCGA-IR-A3LH-01 2 27260521 27260521 C G TMEM214 Missense_Mutation p.S368C 0.25 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LH-01 2 27597275 27597275 G C SNX17 Missense_Mutation p.E196Q 0.08 tolerated(0.37) benign(0.171) TCGA-IR-A3LH-01 2 27830880 27830880 C G ZNF512 Missense_Mutation p.Q369E 0.28 tolerated(0.31) benign(0.3) TCGA-IR-A3LH-01 2 27880316 27880316 C T SUPT7L Missense_Mutation p.D214N 0.18 tolerated(0.1) possibly_damaging(0.618) TCGA-IR-A3LH-01 2 33808899 33808899 C G FAM98A 3'UTR 0.19 TCGA-IR-A3LH-01 2 36778117 36778117 C T CRIM1 3'UTR 0.23 TCGA-IR-A3LH-01 2 37543598 37543598 G A PRKD3 Missense_Mutation p.P24S 0.22 tolerated_low_confidence(0.09) benign(0.001) TCGA-IR-A3LH-01 2 43453531 43453531 G C ZFP36L2 5'UTR 0.28 TCGA-IR-A3LH-01 2 45808930 45808930 G A SRBD1 Missense_Mutation p.H279Y 0.21 tolerated(0.1) benign(0.03) TCGA-IR-A3LH-01 2 46378297 46378297 G A PRKCE Missense_Mutation p.E617K 0.32 deleterious(0.04) probably_damaging(0.981) TCGA-IR-A3LH-01 2 46986242 46986242 G C SOCS5 Missense_Mutation p.M191I 0.11 tolerated(1) benign(0) TCGA-IR-A3LH-01 2 48825756 48825756 C T STON1 3'UTR 0.40 TCGA-IR-A3LH-01 2 63833082 63833082 G - MDH1 Frame_Shift_Del p.V285Cfs*25 0.13 TCGA-IR-A3LH-01 2 64117251 64117251 G C UGP2 Missense_Mutation p.D451H 0.17 tolerated(0.06) benign(0.16) TCGA-IR-A3LH-01 2 64117260 64117260 G C UGP2 Missense_Mutation p.E454Q 0.24 deleterious(0) possibly_damaging(0.781) TCGA-IR-A3LH-01 2 64800109 64800109 G A AFTPH Silent p.L767L 0.26 TCGA-IR-A3LH-01 2 69575310 69575310 G A GFPT1 Silent p.I334I 0.25 TCGA-IR-A3LH-01 2 71576778 71576778 G C ZNF638 Missense_Mutation p.E232Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LH-01 2 71620688 71620688 G A ZNF638 Intron 0.33 TCGA-IR-A3LH-01 2 73675942 73675942 C T ALMS1 Missense_Mutation p.S762F 0.28 probably_damaging(0.964) TCGA-IR-A3LH-01 2 74173878 74173878 G A DGUOK Silent p.L96L 0.13 TCGA-IR-A3LH-01 2 74685709 74685709 C T WBP1 5'UTR 0.22 TCGA-IR-A3LH-01 2 74685750 74685750 G C WBP1 Silent p.G7G 0.17 TCGA-IR-A3LH-01 2 74686631 74686631 C G WBP1 Intron 0.21 TCGA-IR-A3LH-01 2 84851722 84851722 G C DNAH6 Missense_Mutation p.R1444T 0.24 deleterious(0.04) probably_damaging(0.997) TCGA-IR-A3LH-01 2 84934134 84934134 G C DNAH6 Missense_Mutation p.E2948Q 0.31 tolerated(0.42) benign(0.026) TCGA-IR-A3LH-01 2 85777799 85777799 G C GGCX Missense_Mutation p.L655V 0.19 tolerated(0.54) benign(0.027) TCGA-IR-A3LH-01 2 85820264 85820264 C G VAMP5 Nonsense_Mutation p.S112* 0.19 TCGA-IR-A3LH-01 2 85876361 85876361 G C USP39 3'UTR 0.20 TCGA-IR-A3LH-01 2 88409911 88409911 C T SMYD1 Silent p.F451F 0.21 TCGA-IR-A3LH-01 2 88427534 88427534 C T FABP1 Translation_Start_Site p.M1? 0.16 deleterious(0) possibly_damaging(0.903) TCGA-IR-A3LH-01 2 88861854 88861854 G C EIF2AK3 Missense_Mutation p.L1014V 0.24 deleterious(0.01) probably_damaging(0.967) TCGA-IR-A3LH-01 2 9544820 9544820 G A ITGB1BP1 3'UTR 0.15 TCGA-IR-A3LH-01 2 96048139 96048139 C G KCNIP3 Missense_Mutation p.I190M 0.22 deleterious(0.02) probably_damaging(1) TCGA-IR-A3LH-01 2 96192513 96192513 G A RP11-440D17.3 5'Flank 0.33 TCGA-IR-A3LH-01 2 96458001 96458001 C G AC008268.2 RNA 0.16 TCGA-IR-A3LH-01 2 97475114 97475114 C G CNNM4 Missense_Mutation p.Q730E 0.25 deleterious(0.03) possibly_damaging(0.813) TCGA-IR-A3LH-01 2 97475881 97475881 C T CNNM4 3'UTR 0.27 TCGA-IR-A3LH-01 2 97637691 97637691 C G FAM178B Missense_Mutation p.E171Q 0.27 deleterious(0.05) benign(0.409) TCGA-IR-A3LH-01 2 98262630 98262630 G C COX5B Silent p.A27A 0.27 TCGA-IR-A3LH-01 2 99999378 99999378 C T EIF5B Silent p.L755L 0.26 TCGA-IR-A3LH-01 3 10320145 10320145 A G TATDN2 Missense_Mutation p.Q715R 0.11 tolerated(0.2) benign(0.133) TCGA-IR-A3LH-01 3 108751580 108751580 G T MORC1 Missense_Mutation p.R518S 0.14 tolerated(0.81) benign(0.089) TCGA-IR-A3LH-01 3 109052738 109052738 T - DPPA4 Frame_Shift_Del p.M53Cfs*41 0.20 TCGA-IR-A3LH-01 3 11061998 11061998 G C SLC6A1 Missense_Mutation p.E191Q 0.35 deleterious(0.02) probably_damaging(0.982) TCGA-IR-A3LH-01 3 111766716 111766716 C G TMPRSS7 Silent p.L161L 0.46 TCGA-IR-A3LH-01 3 112251446 112251446 G A ATG3 3'UTR 0.12 TCGA-IR-A3LH-01 3 113440463 113440463 C T NAA50 3'UTR 0.45 TCGA-IR-A3LH-01 3 113440729 113440729 C G NAA50 Missense_Mutation p.E130Q 0.41 tolerated(0.07) benign(0.034) TCGA-IR-A3LH-01 3 120114565 120114565 C G FSTL1 3'UTR 0.19 TCGA-IR-A3LH-01 3 121409720 121409720 C G GOLGB1 Missense_Mutation p.D2831H 0.17 possibly_damaging(0.882) TCGA-IR-A3LH-01 3 121409879 121409879 C G GOLGB1 Missense_Mutation p.E2778Q 0.14 probably_damaging(0.941) TCGA-IR-A3LH-01 3 121445852 121445852 C G GOLGB1 Missense_Mutation p.E147Q 0.27 probably_damaging(0.972) TCGA-IR-A3LH-01 3 125257330 125257330 C T OSBPL11 Silent p.V663V 0.12 TCGA-IR-A3LH-01 3 125295085 125295085 G A OSBPL11 Missense_Mutation p.S205L 0.19 tolerated(0.12) benign(0) TCGA-IR-A3LH-01 3 126201139 126201139 G A UROC1 3'UTR 0.26 TCGA-IR-A3LH-01 3 12623441 12623441 G T MKRN2 Missense_Mutation p.G368V 0.22 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LH-01 3 130159288 130159288 G A COL6A5 Missense_Mutation p.D2036N 0.21 tolerated(1) benign(0.002) TCGA-IR-A3LH-01 3 130286999 130286999 A G COL6A6 Missense_Mutation p.K651R 0.10 tolerated(0.23) probably_damaging(0.998) TCGA-IR-A3LH-01 3 132211367 132211367 C G DNAJC13 Missense_Mutation p.P1245A 0.18 deleterious(0) possibly_damaging(0.829) TCGA-IR-A3LH-01 3 132322118 132322118 C T ACAD11 Missense_Mutation p.D526N 0.07 deleterious(0) possibly_damaging(0.464) TCGA-IR-A3LH-01 3 133099785 133099785 G A TMEM108 Missense_Mutation p.M410I 0.07 tolerated_low_confidence(0.37) benign(0.006) TCGA-IR-A3LH-01 3 134086395 134086395 C T AMOTL2 Missense_Mutation p.E329K 0.10 deleterious(0.02) possibly_damaging(0.729) TCGA-IR-A3LH-01 3 134978268 134978268 C A EPHB1 3'UTR 0.19 TCGA-IR-A3LH-01 3 13543431 13543431 C T HDAC11 Nonsense_Mutation p.Q184* 0.25 TCGA-IR-A3LH-01 3 136699293 136699293 C G IL20RB Intron 0.15 TCGA-IR-A3LH-01 3 138037001 138037001 G C NME9 Missense_Mutation p.L64V 0.12 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 3 141884578 141884578 C G GK5 Silent p.L492L 0.50 TCGA-IR-A3LH-01 3 143710382 143710382 C T C3orf58 3'UTR 0.13 TCGA-IR-A3LH-01 3 1444154 1444154 G A CNTN6 Silent p.R990R 0.21 TCGA-IR-A3LH-01 3 147130351 147130351 C T ZIC1 Silent p.F343F 0.21 TCGA-IR-A3LH-01 3 150404129 150404129 G C FAM194A Missense_Mutation p.S189C 0.51 tolerated(0.07) possibly_damaging(0.698) TCGA-IR-A3LH-01 3 151155959 151155959 C T IGSF10 Missense_Mutation p.M2130I 0.18 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 3 152883033 152883033 G C RAP2B 3'UTR 0.30 TCGA-IR-A3LH-01 3 156255488 156255488 G C KCNAB1 3'UTR 0.33 TCGA-IR-A3LH-01 3 157815852 157815852 C G SHOX2 Silent p.L344L 0.54 TCGA-IR-A3LH-01 3 159615089 159615089 G C IQCJ-SCHIP1 3'UTR 0.15 TCGA-IR-A3LH-01 3 164904636 164904636 G T SLITRK3 3'UTR 0.15 TCGA-IR-A3LH-01 3 16629399 16629399 G A DAZL 3'UTR 0.28 TCGA-IR-A3LH-01 3 167051764 167051764 G C ZBBX Missense_Mutation p.Q180E 0.13 tolerated(0.05) benign(0.017) TCGA-IR-A3LH-01 3 169492152 169492152 C G MYNN Silent p.L23L 0.15 TCGA-IR-A3LH-01 3 169514687 169514687 C T LRRC34 Missense_Mutation p.E252K 0.16 deleterious(0.02) possibly_damaging(0.657) TCGA-IR-A3LH-01 3 170184915 170184915 C T SLC7A14 Silent p.K748K 0.17 TCGA-IR-A3LH-01 3 170425951 170425951 G T CLDN11 3'UTR 0.17 TCGA-IR-A3LH-01 3 172486809 172486809 C G ECT2 Missense_Mutation p.S435C 0.20 deleterious(0.04) probably_damaging(0.95) TCGA-IR-A3LH-01 3 178916881 178916881 T C PIK3CA Missense_Mutation p.C90R 0.20 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 3 179576852 179576852 C G PEX5L Missense_Mutation p.E274Q 0.16 deleterious(0.03) probably_damaging(0.98) TCGA-IR-A3LH-01 3 183638931 183638931 C T ABCC5 3'UTR 0.20 TCGA-IR-A3LH-01 3 183756393 183756393 C T HTR3D Silent p.L372L 0.24 TCGA-IR-A3LH-01 3 184298864 184298864 C G EPHB3 Silent p.L881L 0.17 TCGA-IR-A3LH-01 3 186274421 186274421 G A TBCCD1 Silent p.L212L 0.11 TCGA-IR-A3LH-01 3 186793374 186793374 G A ST6GAL1 Missense_Mutation p.C335Y 0.18 probably_damaging(1) TCGA-IR-A3LH-01 3 195016553 195016553 G T ACAP2 Nonsense_Mutation p.S519* 0.21 TCGA-IR-A3LH-01 3 195509810 195509810 G A MUC4 Missense_Mutation p.L2881F 0.08 possibly_damaging(0.623) TCGA-IR-A3LH-01 3 195511679 195511679 G A MUC4 Missense_Mutation p.P2258S 0.19 unknown(0) TCGA-IR-A3LH-01 3 3080685 3080685 G A CNTN4 Missense_Mutation p.E721K 0.19 deleterious(0.03) probably_damaging(0.973) TCGA-IR-A3LH-01 3 32933376 32933376 C G TRIM71 3'UTR 0.21 TCGA-IR-A3LH-01 3 38294398 38294398 G A OXSR1 3'UTR 0.20 TCGA-IR-A3LH-01 3 38294914 38294914 C G OXSR1 3'UTR 0.25 TCGA-IR-A3LH-01 3 38347923 38347923 C A SLC22A14 Missense_Mutation p.P136T 0.28 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 3 44948438 44948438 C T TGM4 Intron 0.18 TCGA-IR-A3LH-01 3 45715872 45715872 G C LIMD1 Missense_Mutation p.R621T 0.27 deleterious(0) benign(0.358) TCGA-IR-A3LH-01 3 46306660 46306660 C T CCR3 Missense_Mutation p.S25L 0.22 tolerated(0.11) benign(0.005) TCGA-IR-A3LH-01 3 47889784 47889784 G C DHX30 Missense_Mutation p.E801Q 0.16 tolerated(0.12) benign(0.044) TCGA-IR-A3LH-01 3 48459942 48459942 C T PLXNB1 Missense_Mutation p.E989K 0.23 tolerated(0.09) benign(0.001) TCGA-IR-A3LH-01 3 49452402 49452402 G C TCTA 3'UTR 0.45 TCGA-IR-A3LH-01 3 50382636 50382636 C T ZMYND10 Silent p.E40E 0.15 TCGA-IR-A3LH-01 3 51458162 51458162 G A VPRBP Silent p.I325I 0.13 TCGA-IR-A3LH-01 3 52775485 52775485 C T NEK4 Missense_Mutation p.D679N 0.25 deleterious(0) probably_damaging(0.963) TCGA-IR-A3LH-01 3 55544664 55544664 G C ERC2 3'UTR 0.37 TCGA-IR-A3LH-01 3 56627714 56627714 G A CCDC66 Missense_Mutation p.E422K 0.25 tolerated(0.12) possibly_damaging(0.485) TCGA-IR-A3LH-01 3 58490952 58490952 C T ACOX2 Silent p.%3D 0.31 TCGA-IR-A3LH-01 3 69265484 69265484 G C FRMD4B Missense_Mutation p.P269R 0.22 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 3 73431892 73431892 C T PDZRN3 3'UTR 0.29 TCGA-IR-A3LH-01 3 8590398 8590398 G C LMCD1 Missense_Mutation p.E178Q 0.23 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LH-01 3 9412758 9412758 G C THUMPD3 Missense_Mutation p.K115N 0.33 tolerated(0.08) benign(0.036) TCGA-IR-A3LH-01 3 9412866 9412866 G C THUMPD3 Missense_Mutation p.Q151H 0.16 tolerated(0.12) benign(0.014) TCGA-IR-A3LH-01 3 95374279 95374279 C G MTHFD2P1 RNA 0.92 TCGA-IR-A3LH-01 3 9543876 9543876 G A LHFPL4 3'UTR 0.22 TCGA-IR-A3LH-01 3 97887764 97887764 C T OR5H15 Missense_Mutation p.S74L 0.15 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LH-01 4 100570711 100570711 G A RP11-766F14.2 Missense_Mutation p.R1699C 0.22 deleterious(0.03) benign(0.335) TCGA-IR-A3LH-01 4 113435218 113435218 G C NEUROG2 3'UTR 0.25 TCGA-IR-A3LH-01 4 119958343 119958343 G A SYNPO2 Intron 0.74 TCGA-IR-A3LH-01 4 122053602 122053602 G C TNIP3 3'UTR 0.57 TCGA-IR-A3LH-01 4 122791502 122791502 C A BBS7 5'UTR 0.15 TCGA-IR-A3LH-01 4 126411501 126411501 C T FAT4 Silent p.I4508I 0.33 TCGA-IR-A3LH-01 4 140272765 140272765 G C NAA15 Missense_Mutation p.K338N 0.12 deleterious(0.04) possibly_damaging(0.893) TCGA-IR-A3LH-01 4 140297522 140297522 G A NAA15 Missense_Mutation p.E651K 0.29 deleterious(0.03) benign(0.258) TCGA-IR-A3LH-01 4 140297537 140297537 G A NAA15 Missense_Mutation p.E656K 0.21 tolerated(0.12) probably_damaging(1) TCGA-IR-A3LH-01 4 140310429 140310429 C T NAA15 3'UTR 0.42 TCGA-IR-A3LH-01 4 148463720 148463720 C G EDNRA Missense_Mutation p.Q412E 0.13 tolerated(0.38) benign(0.013) TCGA-IR-A3LH-01 4 148605133 148605133 C T PRMT10 Silent p.S2S 0.16 TCGA-IR-A3LH-01 4 159589619 159589619 C G C4orf46 3'UTR 0.36 TCGA-IR-A3LH-01 4 159631994 159631994 C G PPID Missense_Mutation p.E301Q 0.35 tolerated(0.17) benign(0.07) TCGA-IR-A3LH-01 4 164085493 164085493 G A NAF1 Missense_Mutation p.S139L 0.18 deleterious(0.03) benign(0.098) TCGA-IR-A3LH-01 4 164394281 164394281 G A TKTL2 Silent p.I202I 0.12 TCGA-IR-A3LH-01 4 170557194 170557194 C G CLCN3 Missense_Mutation p.Q39E 0.09 tolerated(0.71) benign(0.004) TCGA-IR-A3LH-01 4 186244913 186244913 G C SNX25 Missense_Mutation p.E406Q 0.22 tolerated(0.15) benign(0.005) TCGA-IR-A3LH-01 4 187630702 187630703 AA - FAT1 Frame_Shift_Del p.F93Lfs*16 0.45 TCGA-IR-A3LH-01 4 26417194 26417194 C T RBPJ Nonsense_Mutation p.Q98* 0.21 TCGA-IR-A3LH-01 4 3944218 3944218 G A FAM86EP RNA 0.34 TCGA-IR-A3LH-01 4 43032426 43032426 C T GRXCR1 Missense_Mutation p.L248F 0.19 deleterious(0.02) benign(0.134) TCGA-IR-A3LH-01 4 48073610 48073610 G C TXK Missense_Mutation p.S480C 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-IR-A3LH-01 4 52779528 52779528 G T DCUN1D4 Missense_Mutation p.D265Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LH-01 4 56826027 56826027 T A CEP135 Intron 0.19 TCGA-IR-A3LH-01 4 59337 59337 C T ZNF595 Silent p.F6F 0.04 TCGA-IR-A3LH-01 4 68411144 68411144 G A CENPC 5'UTR 0.09 TCGA-IR-A3LH-01 4 69203421 69203421 C G YTHDC1 Missense_Mutation p.D110H 0.18 tolerated_low_confidence(0.07) unknown(0) TCGA-IR-A3LH-01 4 70460216 70460216 C T UGT2A1 Missense_Mutation p.R594K 0.15 tolerated(1) benign(0.042) TCGA-IR-A3LH-01 4 72436309 72436309 C G SLC4A4 3'UTR 0.20 TCGA-IR-A3LH-01 4 78082672 78082672 G A CCNG2 Silent p.L189L 0.16 TCGA-IR-A3LH-01 4 78640855 78640855 G C CNOT6L 3'UTR 0.23 TCGA-IR-A3LH-01 4 79417961 79417961 G A FRAS1 Silent p.V2987V 0.13 TCGA-IR-A3LH-01 4 79420976 79420976 C T FRAS1 Nonsense_Mutation p.Q3073* 0.18 TCGA-IR-A3LH-01 4 83839307 83839307 C G THAP9 Missense_Mutation p.Q648E 0.28 tolerated(0.1) benign(0.031) TCGA-IR-A3LH-01 4 86396517 86396517 C G ARHGAP24 5'UTR 0.23 TCGA-IR-A3LH-01 4 88231402 88231402 G A HSD17B13 Silent p.L269L 0.22 TCGA-IR-A3LH-01 4 88258016 88258016 G C HSD17B11 3'UTR 0.17 TCGA-IR-A3LH-01 4 88415459 88415459 C G SPARCL1 Missense_Mutation p.E165Q 0.18 tolerated(0.05) possibly_damaging(0.452) TCGA-IR-A3LH-01 4 88766903 88766903 C T MEPE Missense_Mutation p.H295Y 0.20 deleterious(0.01) benign(0.116) TCGA-IR-A3LH-01 4 89361087 89361087 G C HERC6 Missense_Mutation p.E873Q 0.33 deleterious(0.01) probably_damaging(0.909) TCGA-IR-A3LH-01 4 91701592 91701592 G C CCSER1 Intron 0.10 TCGA-IR-A3LH-01 4 98761974 98761974 G A STPG2 Missense_Mutation p.S385F 0.12 deleterious(0) probably_damaging(0.983) TCGA-IR-A3LH-01 5 110428117 110428117 C G WDR36 Nonsense_Mutation p.S44* 0.22 TCGA-IR-A3LH-01 5 111066249 111066249 C T NREP 3'UTR 0.14 TCGA-IR-A3LH-01 5 112770617 112770617 C G TSSK1B 5'UTR 0.17 TCGA-IR-A3LH-01 5 115319106 115319106 T A AQPEP Missense_Mutation p.L273H 0.26 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 5 127493755 127493755 C T SLC12A2 Missense_Mutation p.L792F 0.12 deleterious(0) possibly_damaging(0.651) TCGA-IR-A3LH-01 5 127593704 127593704 G C FBN2 3'Flank 0.11 TCGA-IR-A3LH-01 5 130495251 130495251 C G HINT1 Silent p.L90L 0.15 TCGA-IR-A3LH-01 5 132044647 132044647 C T KIF3A Intron 0.27 TCGA-IR-A3LH-01 5 132200008 132200008 C T GDF9 Missense_Mutation p.R73Q 0.29 tolerated(0.46) benign(0.006) TCGA-IR-A3LH-01 5 132409732 132409732 G A HSPA4 Missense_Mutation p.E193K 0.12 deleterious(0) possibly_damaging(0.902) TCGA-IR-A3LH-01 5 135513164 135513164 C T SMAD5 Missense_Mutation p.S464L 0.13 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LH-01 5 137600194 137600194 G C GFRA3 Silent p.L45L 0.24 TCGA-IR-A3LH-01 5 137780478 137780478 G C REEP2 Missense_Mutation p.K113N 0.23 deleterious(0) benign(0.167) TCGA-IR-A3LH-01 5 139422051 139422051 C T NRG2 Missense_Mutation p.E202K 0.21 tolerated(0.1) possibly_damaging(0.53) TCGA-IR-A3LH-01 5 140222207 140222207 C T PCDHA8 Missense_Mutation p.S434L 0.25 deleterious_low_confidence(0.05) benign(0.05) TCGA-IR-A3LH-01 5 140347080 140347080 C T PCDHAC2 Silent p.I243I 0.12 TCGA-IR-A3LH-01 5 140580141 140580141 C T PCDHB11 Missense_Mutation p.S265L 0.26 tolerated_low_confidence(0.07) benign(0.169) TCGA-IR-A3LH-01 5 140731523 140731523 G A PCDHGB1 Missense_Mutation p.D566N 0.27 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LH-01 5 140762733 140762733 G C PCDHGA7 Missense_Mutation p.R89S 0.14 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-IR-A3LH-01 5 141692845 141692845 C G SPRY4 3'UTR 0.13 TCGA-IR-A3LH-01 5 142780064 142780064 G A NR3C1 Missense_Mutation p.S114L 0.11 tolerated_low_confidence(0.78) benign(0.023) TCGA-IR-A3LH-01 5 142780157 142780157 G A NR3C1 Missense_Mutation p.S83L 0.22 deleterious_low_confidence(0.03) benign(0.168) TCGA-IR-A3LH-01 5 148407944 148407944 C T SH3TC2 Missense_Mutation p.E451K 0.23 tolerated(1) benign(0.047) TCGA-IR-A3LH-01 5 150946710 150946710 G A FAT2 Nonsense_Mutation p.Q595* 0.15 TCGA-IR-A3LH-01 5 150946976 150946976 G A FAT2 Missense_Mutation p.S506F 0.22 probably_damaging(0.936) TCGA-IR-A3LH-01 5 154191164 154191164 C T LARP1 Silent p.L938L 0.45 TCGA-IR-A3LH-01 5 158750066 158750066 C G IL12B Missense_Mutation p.Q120H 0.24 tolerated(0.54) possibly_damaging(0.505) TCGA-IR-A3LH-01 5 159520795 159520795 G C PWWP2A Missense_Mutation p.Q288E 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-IR-A3LH-01 5 159901453 159901453 C G MIR3142 RNA 0.17 TCGA-IR-A3LH-01 5 160114974 160114974 C G ATP10B Silent p.G36G 0.22 TCGA-IR-A3LH-01 5 162909670 162909670 G A HMMR Missense_Mutation p.E470K 0.15 deleterious(0.01) possibly_damaging(0.716) TCGA-IR-A3LH-01 5 16711116 16711116 C G MYO10 Missense_Mutation p.M690I 0.44 tolerated(0.12) benign(0.014) TCGA-IR-A3LH-01 5 167675223 167675223 C G TENM2 Missense_Mutation p.Q2427E 0.28 tolerated(1) benign(0.01) TCGA-IR-A3LH-01 5 169023670 169023670 C G SPDL1 Missense_Mutation p.L333V 0.16 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 5 170814913 170814913 C T NPM1 5'UTR 0.18 TCGA-IR-A3LH-01 5 175395167 175395167 C G THOC3 Missense_Mutation p.Q15H 0.12 deleterious_low_confidence(0.01) benign(0.029) TCGA-IR-A3LH-01 5 176824801 176824801 C T SLC34A1 Silent p.F478F 0.14 TCGA-IR-A3LH-01 5 176824813 176824813 C A SLC34A1 Silent p.I482I 0.12 TCGA-IR-A3LH-01 5 176824930 176824930 C T SLC34A1 Silent p.V521V 0.17 TCGA-IR-A3LH-01 5 176829248 176829248 C G F12 3'UTR 0.19 TCGA-IR-A3LH-01 5 176832361 176832361 G A F12 Silent p.L120L 0.29 TCGA-IR-A3LH-01 5 178358759 178358759 C G ZFP2 Missense_Mutation p.Q149E 0.30 tolerated(0.07) benign(0.01) TCGA-IR-A3LH-01 5 178413374 178413374 G C GRM6 Silent p.L627L 0.20 TCGA-IR-A3LH-01 5 178505884 178505884 G A ZNF354C Missense_Mutation p.E151K 0.37 tolerated(1) benign(0.001) TCGA-IR-A3LH-01 5 179743390 179743390 C G GFPT2 Missense_Mutation p.R408S 0.23 deleterious(0) probably_damaging(0.962) TCGA-IR-A3LH-01 5 179743416 179743416 C T GFPT2 Missense_Mutation p.E400K 0.22 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LH-01 5 180687439 180687439 C A TRIM52 Nonsense_Mutation p.E126* 0.21 TCGA-IR-A3LH-01 5 36985280 36985280 C T NIPBL Silent p.S666S 0.18 TCGA-IR-A3LH-01 5 37302895 37302895 C G NUP155 Missense_Mutation p.E1145Q 0.15 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LH-01 5 40681884 40681884 C T PTGER4 Silent p.I263I 0.15 TCGA-IR-A3LH-01 5 43277278 43277278 G A NIM1K Missense_Mutation p.E138K 0.25 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 5 54420851 54420851 G C CDC20B Nonsense_Mutation p.S332* 0.18 TCGA-IR-A3LH-01 5 54581210 54581210 C T DHX29 Missense_Mutation p.V423I 0.29 tolerated(0.45) benign(0.08) TCGA-IR-A3LH-01 5 65307894 65307894 G A ERBB2IP Missense_Mutation p.E109K 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-IR-A3LH-01 5 65454727 65454727 C T SREK1 Intron 0.30 TCGA-IR-A3LH-01 5 6632822 6632822 G A NSUN2 Silent p.F48F 0.47 TCGA-IR-A3LH-01 5 6756590 6756590 G A PAPD7 3'UTR 0.38 TCGA-IR-A3LH-01 5 67576382 67576382 C G PIK3R1 Missense_Mutation p.Q221E 0.28 tolerated(0.52) benign(0.281) TCGA-IR-A3LH-01 5 68651483 68651483 C G TAF9 Missense_Mutation p.E107Q 0.28 tolerated(0.39) benign(0.078) TCGA-IR-A3LH-01 5 70308577 70308577 G A NAIP Nonsense_Mutation p.Q56* 0.22 TCGA-IR-A3LH-01 5 71490611 71490611 C A MAP1B Missense_Mutation p.P477T 0.24 unknown(0) TCGA-IR-A3LH-01 5 71490899 71490899 C G MAP1B Missense_Mutation p.H573D 0.14 unknown(0) TCGA-IR-A3LH-01 5 71491642 71491642 C T MAP1B Silent p.A820A 0.27 TCGA-IR-A3LH-01 5 73153511 73153511 C T ARHGEF28 Silent p.I607I 0.23 TCGA-IR-A3LH-01 5 74009455 74009455 G T HEXB Missense_Mutation p.G299V 0.35 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LH-01 5 78610183 78610183 C T JMY Missense_Mutation p.S723F 0.19 deleterious(0) possibly_damaging(0.506) TCGA-IR-A3LH-01 5 79617374 79617374 C G SPZ1 3'UTR 0.31 TCGA-IR-A3LH-01 5 79809527 79809527 C G FAM151B Missense_Mutation p.L86V 0.26 deleterious(0.03) probably_damaging(0.986) TCGA-IR-A3LH-01 5 90666211 90666211 C T ARRDC3 3'UTR 0.25 TCGA-IR-A3LH-01 5 90666668 90666668 C G ARRDC3 3'UTR 0.27 TCGA-IR-A3LH-01 5 94206631 94206631 C G MCTP1 Silent p.L729L 0.09 TCGA-IR-A3LH-01 5 94938950 94938950 C T ARSK Missense_Mutation p.S444L 0.30 tolerated(0.41) benign(0.006) TCGA-IR-A3LH-01 5 96443085 96443085 C T LIX1 Silent p.Q122Q 0.27 TCGA-IR-A3LH-01 6 109894651 109894651 C G AK9 Missense_Mutation p.E780Q 0.20 tolerated(0.07) benign(0.068) TCGA-IR-A3LH-01 6 110714274 110714274 G A DDO Silent p.L272L 0.15 TCGA-IR-A3LH-01 6 110934235 110934235 C G CDK19 3'UTR 0.14 TCGA-IR-A3LH-01 6 112029129 112029129 C T FYN Missense_Mutation p.E147K 0.09 deleterious(0.02) probably_damaging(0.982) TCGA-IR-A3LH-01 6 112672181 112672181 G C RFPL4B 3'UTR 0.27 TCGA-IR-A3LH-01 6 119327698 119327698 G A FAM184A Nonsense_Mutation p.Q577* 0.35 TCGA-IR-A3LH-01 6 12294300 12294300 G A EDN1 Nonsense_Mutation p.W120* 0.32 TCGA-IR-A3LH-01 6 132172328 132172328 G A ENPP1 Silent p.L159L 0.40 TCGA-IR-A3LH-01 6 132966947 132966947 C T TAAR1 Missense_Mutation p.A66T 0.18 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LH-01 6 136923055 136923055 G C MAP3K5 Missense_Mutation p.F914L 0.43 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LH-01 6 138608232 138608232 C T KIAA1244 Missense_Mutation p.S936L 0.22 tolerated(0.09) probably_damaging(0.997) TCGA-IR-A3LH-01 6 147103320 147103320 G C ADGB Missense_Mutation p.E1343Q 0.35 tolerated(0.22) possibly_damaging(0.46) TCGA-IR-A3LH-01 6 15452293 15452293 C T JARID2 Missense_Mutation p.T127I 0.30 tolerated(0.07) probably_damaging(0.998) TCGA-IR-A3LH-01 6 155154928 155154928 G C SCAF8 3'UTR 0.20 TCGA-IR-A3LH-01 6 160176556 160176556 G C WTAP Silent p.V368V 0.33 TCGA-IR-A3LH-01 6 168227370 168227370 C T MLLT4 5'Flank 0.29 TCGA-IR-A3LH-01 6 24705854 24705854 C G C6orf62 3'UTR 0.35 TCGA-IR-A3LH-01 6 24716531 24716531 C T C6orf62 Missense_Mutation p.E51K 0.19 deleterious(0.04) probably_damaging(0.99) TCGA-IR-A3LH-01 6 26045930 26045930 G C HIST1H3C Missense_Mutation p.E98Q 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IR-A3LH-01 6 26156771 26156771 C T HIST1H1E Silent p.S51S 0.35 TCGA-IR-A3LH-01 6 26468258 26468258 C T BTN2A1 Silent p.F355F 0.16 TCGA-IR-A3LH-01 6 26892977 26892977 C T GUSBP2 RNA 0.18 TCGA-IR-A3LH-01 6 28213016 28213016 G A ZKSCAN4 Nonsense_Mutation p.Q506* 0.42 TCGA-IR-A3LH-01 6 28540724 28540724 G C SCAND3 Missense_Mutation p.S981C 0.22 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LH-01 6 29912835 29912835 G C HLA-A Splice_Site p.X338_splice 0.33 TCGA-IR-A3LH-01 6 30458199 30458199 G A HLA-E Missense_Mutation p.E173K 0.37 tolerated_low_confidence(0.39) possibly_damaging(0.663) TCGA-IR-A3LH-01 6 30522370 30522370 G A GNL1 Silent p.I194I 0.11 TCGA-IR-A3LH-01 6 30571789 30571789 C T PPP1R10 Missense_Mutation p.E502K 0.38 deleterious(0) benign(0.344) TCGA-IR-A3LH-01 6 30571825 30571825 C G PPP1R10 Missense_Mutation p.E490Q 0.44 tolerated(0.07) possibly_damaging(0.558) TCGA-IR-A3LH-01 6 30573986 30573986 C T PPP1R10 Silent p.V223V 0.26 TCGA-IR-A3LH-01 6 30576637 30576637 C G PPP1R10 Missense_Mutation p.K83N 0.41 deleterious(0.02) possibly_damaging(0.831) TCGA-IR-A3LH-01 6 30681690 30681690 G C MDC1 Missense_Mutation p.S136C 0.14 deleterious(0.01) benign(0.334) TCGA-IR-A3LH-01 6 30865342 30865342 G A DDR1 Silent p.G734G 0.34 TCGA-IR-A3LH-01 6 31323241 31323241 G A HLA-B Nonsense_Mutation p.Q250* 0.16 TCGA-IR-A3LH-01 6 31603372 31603372 C G PRRC2A Nonsense_Mutation p.S1796* 0.34 TCGA-IR-A3LH-01 6 31603496 31603496 C T PRRC2A Silent p.F1837F 0.17 TCGA-IR-A3LH-01 6 31610002 31610002 G A BAG6 Missense_Mutation p.S711F 0.26 deleterious(0) probably_damaging(0.982) TCGA-IR-A3LH-01 6 31749935 31749935 G A VARS Nonsense_Mutation p.Q724* 0.27 TCGA-IR-A3LH-01 6 31850709 31850709 C G EHMT2 Missense_Mutation p.W1024C 0.43 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LH-01 6 32169850 32169850 C G NOTCH4 Intron 0.21 TCGA-IR-A3LH-01 6 3224671 3224671 C A TUBB2B 3'UTR 0.26 TCGA-IR-A3LH-01 6 35394500 35394500 G A PPARD 3'UTR 0.33 TCGA-IR-A3LH-01 6 39082734 39082734 G A SAYSD1 Silent p.A44A 0.26 TCGA-IR-A3LH-01 6 39267180 39267180 G A KCNK17 3'UTR 0.30 TCGA-IR-A3LH-01 6 39563909 39563909 C T KIF6 Missense_Mutation p.R256Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 6 39847006 39847006 C T DAAM2 Missense_Mutation p.S533F 0.26 tolerated(0.44) benign(0.261) TCGA-IR-A3LH-01 6 39856471 39856471 G A DAAM2 Missense_Mutation p.E693K 0.18 deleterious(0.02) benign(0.446) TCGA-IR-A3LH-01 6 39874294 39874294 G A MOCS1 3'UTR 0.26 TCGA-IR-A3LH-01 6 42986399 42986399 T C KLHDC3 Silent p.F254F 0.19 TCGA-IR-A3LH-01 6 43221331 43221331 G A TTBK1 Missense_Mutation p.R119H 0.19 probably_damaging(1) TCGA-IR-A3LH-01 6 43410728 43410728 C T ABCC10 Silent p.L749L 0.15 TCGA-IR-A3LH-01 6 43483440 43483440 C T YIPF3 Splice_Site p.X97_splice 0.32 TCGA-IR-A3LH-01 6 45390610 45390610 C G RUNX2 Silent p.L113L 0.33 TCGA-IR-A3LH-01 6 46658902 46658902 G A TDRD6 Missense_Mutation p.E1013K 0.43 tolerated(0.13) benign(0.074) TCGA-IR-A3LH-01 6 50683114 50683114 G A TFAP2D Missense_Mutation p.E109K 0.30 tolerated(0.53) benign(0.021) TCGA-IR-A3LH-01 6 51613396 51613396 G T PKHD1 Missense_Mutation p.F3006L 0.42 tolerated(0.24) benign(0.116) TCGA-IR-A3LH-01 6 52053995 52053995 G T IL17A Nonsense_Mutation p.E125* 0.39 TCGA-IR-A3LH-01 6 52619832 52619832 C G GSTA2 Missense_Mutation p.D61H 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-IR-A3LH-01 6 53788251 53788251 G A LRRC1 3'UTR 0.19 TCGA-IR-A3LH-01 6 56368830 56368830 G A DST Missense_Mutation p.L3888F 0.24 probably_damaging(0.984) TCGA-IR-A3LH-01 6 64498954 64498954 C T EYS Silent p.L2525L 0.37 TCGA-IR-A3LH-01 6 76425309 76425309 G A SENP6 Silent p.%3D 0.40 TCGA-IR-A3LH-01 6 8413546 8413546 C T SLC35B3 3'UTR 0.11 TCGA-IR-A3LH-01 6 84871559 84871559 C G KIAA1009 Missense_Mutation p.R861T 0.16 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 6 90354840 90354840 C T MDN1 Missense_Mutation p.R5499Q 0.18 unknown(0) TCGA-IR-A3LH-01 6 90718406 90718406 G A BACH2 Missense_Mutation p.A53V 0.13 deleterious(0.04) possibly_damaging(0.719) TCGA-IR-A3LH-01 6 96969749 96969749 G T UFL1 5'UTR 0.24 TCGA-IR-A3LH-01 6 99347235 99347235 G A FBXL4 Missense_Mutation p.S409F 0.13 deleterious(0.01) possibly_damaging(0.534) TCGA-IR-A3LH-01 7 100074917 100074917 G C TSC22D4 Missense_Mutation p.P249A 0.19 deleterious_low_confidence(0.01) benign(0.118) TCGA-IR-A3LH-01 7 100192016 100192016 G T FBXO24 Missense_Mutation p.K306N 0.18 deleterious(0.02) benign(0.403) TCGA-IR-A3LH-01 7 100284359 100284359 C G GIGYF1 Missense_Mutation p.E203Q 0.19 deleterious(0.01) unknown(0) TCGA-IR-A3LH-01 7 100401185 100401185 C T EPHB4 Silent p.L954L 0.19 TCGA-IR-A3LH-01 7 100482440 100482440 C T SRRT Missense_Mutation p.S341F 0.13 deleterious(0.05) benign(0.014) TCGA-IR-A3LH-01 7 100482939 100482939 C T SRRT Missense_Mutation p.S422F 0.17 deleterious(0) possibly_damaging(0.675) TCGA-IR-A3LH-01 7 100483362 100483362 C T SRRT Missense_Mutation p.S453L 0.17 deleterious(0.01) probably_damaging(0.95) TCGA-IR-A3LH-01 7 102246352 102246352 C A RASA4 Missense_Mutation p.W127C 0.08 tolerated(0.12) benign(0.015) TCGA-IR-A3LH-01 7 104653405 104653405 C G KMT2E 5'Flank 0.26 TCGA-IR-A3LH-01 7 104653477 104653477 C T KMT2E 5'Flank 0.17 TCGA-IR-A3LH-01 7 107216828 107216828 A C DUS4L Missense_Mutation p.K166T 0.21 tolerated(0.23) benign(0.003) TCGA-IR-A3LH-01 7 112090694 112090694 C T IFRD1 5'UTR 0.23 TCGA-IR-A3LH-01 7 113517963 113517963 G C PPP1R3A Missense_Mutation p.Q1062E 0.27 tolerated(0.84) benign(0.006) TCGA-IR-A3LH-01 7 113518481 113518481 G A PPP1R3A Missense_Mutation p.S889L 0.18 tolerated(0.27) benign(0.022) TCGA-IR-A3LH-01 7 115624472 115624472 G C TFEC Missense_Mutation p.I8M 0.14 tolerated_low_confidence(0.11) benign(0.092) TCGA-IR-A3LH-01 7 116595074 116595074 C G ST7-OT4 5'UTR 0.11 TCGA-IR-A3LH-01 7 117432046 117432046 G A CTTNBP2 Missense_Mutation p.P402S 0.24 tolerated(0.24) benign(0.028) TCGA-IR-A3LH-01 7 121731835 121731835 C G AASS Missense_Mutation p.L646F 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LH-01 7 127326700 127326700 C G SND1 Missense_Mutation p.Q38E 0.22 tolerated(0.11) benign(0.168) TCGA-IR-A3LH-01 7 127992694 127992694 G A PRRT4 Missense_Mutation p.P306S 0.29 tolerated_low_confidence(0.25) unknown(0) TCGA-IR-A3LH-01 7 128142561 128142561 G A METTL2B 3'UTR 0.12 TCGA-IR-A3LH-01 7 129944388 129944388 C T CPA4 Missense_Mutation p.S152L 0.18 deleterious(0.02) probably_damaging(0.952) TCGA-IR-A3LH-01 7 131176655 131176655 C A MKLN1 3'UTR 0.23 TCGA-IR-A3LH-01 7 134254236 134254236 G A AKR1B15 Silent p.L130L 0.22 TCGA-IR-A3LH-01 7 135418901 135418901 G C FAM180A Missense_Mutation p.P115R 0.26 tolerated(0.44) possibly_damaging(0.499) TCGA-IR-A3LH-01 7 136588013 136588013 G A CHRM2 Intron 0.28 TCGA-IR-A3LH-01 7 139719998 139719998 G A TBXAS1 3'UTR 0.38 TCGA-IR-A3LH-01 7 141952378 141952378 G A PRSS58 Nonsense_Mutation p.Q164* 0.22 TCGA-IR-A3LH-01 7 142013417 142013417 C G TRBV4-1 Missense_Mutation p.S91C 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-IR-A3LH-01 7 148457536 148457536 G C CUL1 Missense_Mutation p.R246T 0.30 tolerated(0.59) benign(0.023) TCGA-IR-A3LH-01 7 149250078 149250078 G A ZNF767 RNA 0.39 TCGA-IR-A3LH-01 7 149430667 149430667 G A KRBA1 Nonsense_Mutation p.W874* 0.16 TCGA-IR-A3LH-01 7 149461499 149461499 C G ZNF467 3'UTR 0.14 TCGA-IR-A3LH-01 7 149466212 149466212 C G ZNF467 Missense_Mutation p.A77P 0.16 tolerated(1) benign(0) TCGA-IR-A3LH-01 7 149571220 149571220 C T ATP6V0E2 Silent p.I71I 0.17 TCGA-IR-A3LH-01 7 150710472 150710472 G C NOS3 Intron 0.12 TCGA-IR-A3LH-01 7 150814771 150814771 G A AGAP3 Missense_Mutation p.E205K 0.23 deleterious(0) probably_damaging(0.96) TCGA-IR-A3LH-01 7 23387308 23387308 C T IGF2BP3 Silent p.S243S 0.70 TCGA-IR-A3LH-01 7 23556088 23556088 G C TRA2A Missense_Mutation p.S77C 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.7) TCGA-IR-A3LH-01 7 27141772 27141772 G A HOXA2 Silent p.A116A 0.51 TCGA-IR-A3LH-01 7 27185519 27185519 G A HOXA6 Missense_Mutation p.H154Y 0.32 tolerated(0.05) benign(0.046) TCGA-IR-A3LH-01 7 30795311 30795311 C T INMT Silent p.S212S 0.46 TCGA-IR-A3LH-01 7 35937985 35937985 G C SEPT7 Missense_Mutation p.E377Q 0.48 deleterious(0.05) probably_damaging(0.988) TCGA-IR-A3LH-01 7 37923939 37923939 C A NME8 Missense_Mutation p.F343L 0.38 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 7 38331318 38331318 C G TRGV11 Missense_Mutation p.E70Q 0.45 deleterious(0.02) probably_damaging(0.98) TCGA-IR-A3LH-01 7 42011988 42011988 G A GLI3 Missense_Mutation p.S684L 0.45 deleterious(0.03) benign(0.354) TCGA-IR-A3LH-01 7 44104591 44104591 C T PGAM2 Silent p.L145L 0.41 TCGA-IR-A3LH-01 7 44259838 44259838 G A CAMK2B Silent p.H608H 0.43 TCGA-IR-A3LH-01 7 44555783 44555783 G A NPC1L1 Missense_Mutation p.S1205F 0.23 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 7 44869568 44869568 C G H2AFV 3'Flank 0.26 TCGA-IR-A3LH-01 7 47451364 47451364 G A TNS3 Silent p.I228I 0.18 TCGA-IR-A3LH-01 7 5663694 5663694 C T RNF216 Silent p.K815K 0.54 TCGA-IR-A3LH-01 7 5963465 5963465 G A CCZ1 Splice_Site p.X422_splice 0.56 TCGA-IR-A3LH-01 7 5963473 5963473 G A CCZ1 Missense_Mutation p.E425K 0.53 tolerated(0.35) benign(0.071) TCGA-IR-A3LH-01 7 66703591 66703591 C G TYW1 3'UTR 0.23 TCGA-IR-A3LH-01 7 71134986 71134986 C T WBSCR17 Silent p.S432S 0.24 TCGA-IR-A3LH-01 7 72412425 72412425 C T POM121 Silent p.P366P 0.13 TCGA-IR-A3LH-01 7 72412538 72412538 C G POM121 Missense_Mutation p.S404C 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-IR-A3LH-01 7 72657426 72657426 G C GTF2IRD2P1 RNA 0.15 TCGA-IR-A3LH-01 7 72891336 72891336 C G BAZ1B Missense_Mutation p.D819H 0.14 deleterious(0.03) benign(0.176) TCGA-IR-A3LH-01 7 72892765 72892765 C G BAZ1B Missense_Mutation p.L342F 0.23 tolerated(0.08) possibly_damaging(0.467) TCGA-IR-A3LH-01 7 73084430 73084430 G C VPS37D Missense_Mutation p.E131Q 0.24 deleterious(0) probably_damaging(0.982) TCGA-IR-A3LH-01 7 73096524 73096524 G C DNAJC30 3'UTR 0.27 TCGA-IR-A3LH-01 7 73118597 73118597 G A STX1A Intron 0.22 TCGA-IR-A3LH-01 7 73500115 73500115 G A LIMK1 Silent p.R31R 0.19 TCGA-IR-A3LH-01 7 75157021 75157021 G A PMS2P3 RNA 0.24 TCGA-IR-A3LH-01 7 75171284 75171284 G C HIP1 Nonsense_Mutation p.S969* 0.20 TCGA-IR-A3LH-01 7 75634621 75634621 C G STYXL1 Missense_Mutation p.L185F 0.24 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LH-01 7 82580207 82580207 C T PCLO Missense_Mutation p.E3233K 0.10 unknown(0) TCGA-IR-A3LH-01 7 87022372 87022372 C G CROT Missense_Mutation p.I597M 0.18 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LH-01 7 92932790 92932790 G C CCDC132 Silent p.L460L 0.28 TCGA-IR-A3LH-01 7 94855369 94855369 G A PPP1R9A Missense_Mutation p.E685K 0.26 deleterious(0) possibly_damaging(0.782) TCGA-IR-A3LH-01 7 98503832 98503832 G A TRRAP Missense_Mutation p.E357K 0.25 benign(0.006) TCGA-IR-A3LH-01 7 98633342 98633342 G A SMURF1 Intron 0.29 TCGA-IR-A3LH-01 7 99722592 99722592 C T CNPY4 3'UTR 0.31 TCGA-IR-A3LH-01 7 99722651 99722651 C T CNPY4 3'UTR 0.36 TCGA-IR-A3LH-01 7 99752690 99752690 G A C7orf43 Silent p.L563L 0.29 TCGA-IR-A3LH-01 8 101178126 101178126 G A SPAG1 Silent p.L75L 0.41 TCGA-IR-A3LH-01 8 101178133 101178133 G C SPAG1 Missense_Mutation p.D78H 0.41 deleterious(0) possibly_damaging(0.868) TCGA-IR-A3LH-01 8 101715212 101715212 C T PABPC1 3'UTR 0.22 TCGA-IR-A3LH-01 8 102504704 102504704 C G GRHL2 5'UTR 0.11 TCGA-IR-A3LH-01 8 103265792 103265792 G A UBR5 3'UTR 0.22 TCGA-IR-A3LH-01 8 103338802 103338802 G A UBR5 Missense_Mutation p.S524L 0.16 deleterious(0.01) possibly_damaging(0.834) TCGA-IR-A3LH-01 8 106816254 106816254 G C ZFPM2 3'UTR 0.21 TCGA-IR-A3LH-01 8 10755048 10755048 C G XKR6 3'UTR 0.35 TCGA-IR-A3LH-01 8 110346687 110346687 C G ENY2 5'UTR 0.18 TCGA-IR-A3LH-01 8 11189627 11189627 G C SLC35G5 Missense_Mutation p.E338Q 0.14 tolerated(0.22) benign(0.011) TCGA-IR-A3LH-01 8 116420950 116420950 C G TRPS1 3'UTR 0.22 TCGA-IR-A3LH-01 8 118825165 118825165 G A EXT1 Silent p.I556I 0.33 TCGA-IR-A3LH-01 8 119936712 119936712 G C TNFRSF11B Missense_Mutation p.I369M 0.28 tolerated(0.07) benign(0.011) TCGA-IR-A3LH-01 8 119964123 119964123 C G TNFRSF11B 5'UTR 0.14 TCGA-IR-A3LH-01 8 124266326 124266326 T A ZHX1 Nonsense_Mutation p.K621* 0.31 TCGA-IR-A3LH-01 8 124266327 124266327 C T ZHX1 Silent p.K620K 0.29 TCGA-IR-A3LH-01 8 124266335 124266335 C G ZHX1 Missense_Mutation p.E618Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LH-01 8 124824814 124824814 C T FAM91A1 Missense_Mutation p.S796L 0.23 tolerated(0.41) benign(0.002) TCGA-IR-A3LH-01 8 128960327 128960327 C T TMEM75 5'UTR 0.16 TCGA-IR-A3LH-01 8 130762759 130762759 G A GSDMC Missense_Mutation p.S334L 0.27 deleterious(0.02) probably_damaging(0.991) TCGA-IR-A3LH-01 8 144801298 144801298 G T MAPK15 Missense_Mutation p.A185S 0.50 deleterious(0.04) probably_damaging(1) TCGA-IR-A3LH-01 8 144801299 144801299 C T MAPK15 Missense_Mutation p.A185V 0.50 deleterious(0.02) probably_damaging(1) TCGA-IR-A3LH-01 8 144940827 144940827 C T EPPK1 Missense_Mutation p.D2199N 0.33 benign(0.003) TCGA-IR-A3LH-01 8 144943471 144943471 G A EPPK1 Silent p.L1317L 0.22 TCGA-IR-A3LH-01 8 144990129 144990129 G C PLEC 3'UTR 0.19 TCGA-IR-A3LH-01 8 144994196 144994196 C G PLEC Missense_Mutation p.E3402Q 0.16 probably_damaging(0.999) TCGA-IR-A3LH-01 8 144996497 144996497 C A PLEC Nonsense_Mutation p.E2635* 0.23 TCGA-IR-A3LH-01 8 144997454 144997454 C G PLEC Missense_Mutation p.E2352Q 0.16 probably_damaging(0.995) TCGA-IR-A3LH-01 8 145690218 145690218 G C CYHR1 Missense_Mutation p.L23V 0.21 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-IR-A3LH-01 8 145948193 145948193 C G ZNF251 Silent p.R284R 0.19 TCGA-IR-A3LH-01 8 145998765 145998765 C T ZNF34 Silent p.R523R 0.21 TCGA-IR-A3LH-01 8 146032959 146032959 C T ZNF517 Silent p.L220L 0.20 TCGA-IR-A3LH-01 8 146228392 146228392 C T ZNF252P-AS1 RNA 0.28 TCGA-IR-A3LH-01 8 17447122 17447122 C T PDGFRL Silent p.I67I 0.17 TCGA-IR-A3LH-01 8 22477686 22477686 C T CCAR2 3'UTR 0.23 TCGA-IR-A3LH-01 8 23148956 23148956 G C R3HCC1 Missense_Mutation p.G125A 0.24 tolerated(0.07) benign(0.049) TCGA-IR-A3LH-01 8 23429135 23429135 C T SLC25A37 Silent p.L262L 0.27 TCGA-IR-A3LH-01 8 25327454 25327454 G A CDCA2 Missense_Mutation p.E260K 0.33 tolerated(0.25) benign(0.093) TCGA-IR-A3LH-01 8 26217714 26217714 G A PPP2R2A Missense_Mutation p.E136K 0.33 deleterious(0.02) possibly_damaging(0.906) TCGA-IR-A3LH-01 8 2836248 2836248 C G CSMD1 Missense_Mutation p.E2818Q 0.29 benign(0.025) TCGA-IR-A3LH-01 8 37797583 37797583 C G GOT1L1 5'UTR 0.30 TCGA-IR-A3LH-01 8 48701765 48701765 G C PRKDC Missense_Mutation p.Q3568E 0.14 benign(0.013) TCGA-IR-A3LH-01 8 49647756 49647756 G A EFCAB1 5'UTR 0.12 TCGA-IR-A3LH-01 8 57092033 57092033 C G PLAG1 5'UTR 0.29 TCGA-IR-A3LH-01 8 57214059 57214059 C T SDR16C5 Missense_Mutation p.D304N 0.24 deleterious(0.01) benign(0) TCGA-IR-A3LH-01 8 68116935 68116935 C T ARFGEF1 Missense_Mutation p.E1647K 0.12 tolerated(0.1) probably_damaging(0.971) TCGA-IR-A3LH-01 8 68995620 68995620 G A PREX2 Missense_Mutation p.R675K 0.22 tolerated(1) probably_damaging(0.965) TCGA-IR-A3LH-01 8 72110389 72110389 C T EYA1 3'UTR 0.21 TCGA-IR-A3LH-01 8 73932993 73932993 G C TERF1 Missense_Mutation p.E164Q 0.15 tolerated(0.14) benign(0.038) TCGA-IR-A3LH-01 8 73958219 73958219 G C TERF1 Missense_Mutation p.K389N 0.28 tolerated(0.17) benign(0.033) TCGA-IR-A3LH-01 8 73958525 73958525 G C TERF1 3'UTR 0.29 TCGA-IR-A3LH-01 8 75227566 75227566 A T JPH1 Silent p.L223L 0.31 TCGA-IR-A3LH-01 8 77767525 77767525 G A ZFHX4 Missense_Mutation p.E2790K 0.30 benign(0.049) TCGA-IR-A3LH-01 8 77776073 77776073 G T ZFHX4 Nonsense_Mutation p.E3375* 0.24 TCGA-IR-A3LH-01 8 77777975 77777976 AA - ZFHX4 3'UTR 0.21 TCGA-IR-A3LH-01 8 86127137 86127137 G A C8orf59 Intron 0.15 TCGA-IR-A3LH-01 8 92083363 92083363 C T OTUD6B Intron 0.32 TCGA-IR-A3LH-01 8 99963122 99963122 G C OSR2 Intron 0.28 TCGA-IR-A3LH-01 9 100076947 100076947 G A CCDC180 Silent p.R256R 0.22 TCGA-IR-A3LH-01 9 100777654 100777654 G C ANP32B Missense_Mutation p.E233Q 0.17 tolerated(0.1) unknown(0) TCGA-IR-A3LH-01 9 101061587 101061587 C G GABBR2 Missense_Mutation p.E821Q 0.23 deleterious(0.04) probably_damaging(0.934) TCGA-IR-A3LH-01 9 103054935 103054935 G A INVS Missense_Mutation p.R799K 0.12 tolerated_low_confidence(0.68) benign(0.001) TCGA-IR-A3LH-01 9 107366964 107366964 G A OR13C2 Silent p.F315F 0.27 TCGA-IR-A3LH-01 9 107367625 107367625 G A OR13C2 Missense_Mutation p.S95F 0.21 tolerated(0.17) benign(0.004) TCGA-IR-A3LH-01 9 108153572 108153572 C T SLC44A1 3'UTR 0.18 TCGA-IR-A3LH-01 9 114981905 114981905 G A PTBP3 3'UTR 0.24 TCGA-IR-A3LH-01 9 114983621 114983621 C T PTBP3 3'UTR 0.16 TCGA-IR-A3LH-01 9 115928225 115928225 C G FKBP15 3'UTR 0.28 TCGA-IR-A3LH-01 9 116812073 116812073 G A ZNF618 Missense_Mutation p.E738K 0.25 tolerated(0.09) probably_damaging(0.937) TCGA-IR-A3LH-01 9 117379410 117379410 G C C9orf91 5'UTR 0.27 TCGA-IR-A3LH-01 9 124794028 124794028 C T TTLL11 Missense_Mutation p.D313N 0.14 tolerated(0.08) benign(0.189) TCGA-IR-A3LH-01 9 126132812 126132812 C T CRB2 Nonsense_Mutation p.Q494* 0.28 TCGA-IR-A3LH-01 9 131492937 131492937 C T ZER1 3'UTR 0.16 TCGA-IR-A3LH-01 9 13223683 13223683 G A MPDZ Silent p.L140L 0.14 TCGA-IR-A3LH-01 9 132687391 132687391 G C FNBP1 Missense_Mutation p.P279A 0.29 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LH-01 9 132897326 132897326 G A GPR107 Missense_Mutation p.E577K 0.21 deleterious(0) possibly_damaging(0.742) TCGA-IR-A3LH-01 9 132897414 132897414 G A GPR107 3'UTR 0.20 TCGA-IR-A3LH-01 9 134053762 134053762 G C NUP214 Missense_Mutation p.L1128F 0.17 probably_damaging(0.979) TCGA-IR-A3LH-01 9 134379625 134379625 G A POMT1 Missense_Mutation p.R7H 0.19 tolerated(0.18) benign(0.001) TCGA-IR-A3LH-01 9 136324093 136324093 C G ADAMTS13 Intron 0.24 TCGA-IR-A3LH-01 9 137690295 137690295 G C COL5A1 Missense_Mutation p.Q980H 0.21 unknown(0) TCGA-IR-A3LH-01 9 139310756 139310756 G C PMPCA Missense_Mutation p.E182D 0.13 tolerated(0.18) benign(0.053) TCGA-IR-A3LH-01 9 139325521 139325521 G A INPP5E Missense_Mutation p.S533L 0.14 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LH-01 9 139735612 139735612 G C RABL6 3'UTR 0.26 TCGA-IR-A3LH-01 9 139998323 139998323 C T MAN1B1 Intron 0.23 TCGA-IR-A3LH-01 9 139998618 139998618 C A MAN1B1 Intron 0.36 TCGA-IR-A3LH-01 9 140082173 140082173 C T ANAPC2 Missense_Mutation p.R167K 0.38 tolerated(0.93) benign(0.001) TCGA-IR-A3LH-01 9 140946583 140946583 G C CACNA1B Silent p.L1250L 0.26 TCGA-IR-A3LH-01 9 18777070 18777070 C G ADAMTSL1 Nonsense_Mutation p.S948* 0.30 TCGA-IR-A3LH-01 9 32785814 32785814 G A TMEM215 3'UTR 0.24 TCGA-IR-A3LH-01 9 32787038 32787038 G C TMEM215 3'UTR 0.32 TCGA-IR-A3LH-01 9 32973534 32973534 G C APTX Missense_Mutation p.Q331E 0.16 tolerated(0.22) benign(0.109) TCGA-IR-A3LH-01 9 35811266 35811266 C T SPAG8 Nonsense_Mutation p.W259* 0.30 TCGA-IR-A3LH-01 9 35812148 35812148 C G SPAG8 5'UTR 0.27 TCGA-IR-A3LH-01 9 3829394 3829394 C A GLIS3 Nonsense_Mutation p.E858* 0.16 TCGA-IR-A3LH-01 9 4118021 4118021 G A GLIS3 Missense_Mutation p.T486I 0.52 tolerated(0.32) benign(0.013) TCGA-IR-A3LH-01 9 5335539 5335539 G C RLN1 Missense_Mutation p.F90L 0.26 tolerated(0.44) benign(0.019) TCGA-IR-A3LH-01 9 5923119 5923119 C G KIAA2026 Missense_Mutation p.E959D 0.15 tolerated(0.1) benign(0.051) TCGA-IR-A3LH-01 9 6013147 6013147 C G RANBP6 Missense_Mutation p.V821L 0.48 tolerated(0.29) benign(0.005) TCGA-IR-A3LH-01 9 7011800 7011800 C T KDM4C Missense_Mutation p.A630V 0.21 deleterious(0.01) probably_damaging(0.914) TCGA-IR-A3LH-01 9 71532470 71532470 G C PIP5K1B Missense_Mutation p.E260Q 0.18 tolerated(0.34) probably_damaging(0.993) TCGA-IR-A3LH-01 9 72741174 72741174 C G MAMDC2 Nonsense_Mutation p.S248* 0.18 TCGA-IR-A3LH-01 9 87284592 87284592 C T NTRK2 Intron 0.50 TCGA-IR-A3LH-01 9 88162079 88162079 G A AGTPBP1 Missense_Mutation p.S1169F 0.18 tolerated_low_confidence(0.07) benign(0.015) TCGA-IR-A3LH-01 9 95073484 95073484 C G NOL8 Missense_Mutation p.E806Q 0.17 deleterious(0) possibly_damaging(0.905) TCGA-IR-A3LH-01 9 95077645 95077645 G A NOL8 Missense_Mutation p.S421F 0.21 tolerated(0.07) benign(0.048) TCGA-IR-A3LH-01 9 95236914 95236914 G A ASPN Missense_Mutation p.S89L 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-IR-A3LH-01 9 99580528 99580528 C G ZNF782 Missense_Mutation p.E593Q 0.24 deleterious(0.01) benign(0.215) TCGA-IR-A3LH-01 X 100808136 100808136 G C ARMCX1 Missense_Mutation p.E75Q 0.14 tolerated_low_confidence(0.29) benign(0.01) TCGA-IR-A3LH-01 X 103031801 103031801 C G PLP1 5'UTR 0.10 TCGA-IR-A3LH-01 X 109561025 109561025 C G AMMECR1 Missense_Mutation p.G92A 0.21 tolerated(0.06) benign(0.074) TCGA-IR-A3LH-01 X 110988027 110988027 C T ALG13 Missense_Mutation p.P943S 0.42 tolerated(0.35) benign(0.05) TCGA-IR-A3LH-01 X 111155612 111155612 G C TRPC5 Silent p.L269L 0.21 TCGA-IR-A3LH-01 X 114346417 114346417 C G LRCH2 3'UTR 0.30 TCGA-IR-A3LH-01 X 117718726 117718726 C G DOCK11 Missense_Mutation p.L542V 0.17 tolerated(0.18) probably_damaging(0.994) TCGA-IR-A3LH-01 X 118604462 118604462 C G SLC25A5 Nonsense_Mutation p.S242* 0.22 TCGA-IR-A3LH-01 X 119389911 119389911 G A ZBTB33 3'UTR 0.19 TCGA-IR-A3LH-01 X 119513442 119513442 G A ATP1B4 Missense_Mutation p.D343N 0.25 deleterious(0) probably_damaging(1) TCGA-IR-A3LH-01 X 12739255 12739255 G C FRMPD4 3'UTR 0.22 TCGA-IR-A3LH-01 X 132159901 132159901 G C USP26 Missense_Mutation p.S783C 0.11 deleterious(0.02) benign(0.421) TCGA-IR-A3LH-01 X 13337060 13337060 C G ATXN3L Missense_Mutation p.G332R 0.21 deleterious_low_confidence(0) benign(0.102) TCGA-IR-A3LH-01 X 134713952 134713952 G C DDX26B Missense_Mutation p.D750H 0.38 tolerated(0.12) benign(0.177) TCGA-IR-A3LH-01 X 135323395 135323395 C A MAP7D3 Missense_Mutation p.R153S 0.24 tolerated(1) benign(0.006) TCGA-IR-A3LH-01 X 135405122 135405122 G C GPR112 Missense_Mutation p.E86Q 0.23 deleterious(0.02) probably_damaging(0.934) TCGA-IR-A3LH-01 X 13790637 13790637 C G GPM6B 3'UTR 0.36 TCGA-IR-A3LH-01 X 140994539 140994539 C G MAGEC1 Missense_Mutation p.S450C 0.27 tolerated_low_confidence(0.08) possibly_damaging(0.7) TCGA-IR-A3LH-01 X 142113842 142113842 G A SPANXN4 Silent p.K14K 0.16 TCGA-IR-A3LH-01 X 149114055 149114055 C T LINC00894 Intron 0.26 TCGA-IR-A3LH-01 X 149963687 149963687 C T CD99L2 Missense_Mutation p.G141E 0.10 tolerated(0.12) benign(0.16) TCGA-IR-A3LH-01 X 152612885 152612885 G A ZNF275 Missense_Mutation p.D248N 0.19 tolerated(0.16) possibly_damaging(0.774) TCGA-IR-A3LH-01 X 152612967 152612967 G A ZNF275 Missense_Mutation p.R275Q 0.28 deleterious(0.03) probably_damaging(0.941) TCGA-IR-A3LH-01 X 153068386 153068386 C T PDZD4 3'UTR 0.22 TCGA-IR-A3LH-01 X 155005062 155005062 C G SPRY3 3'UTR 0.22 TCGA-IR-A3LH-01 X 16142202 16142202 C T GRPR Silent p.V42V 0.19 TCGA-IR-A3LH-01 X 1712389 1712389 G C AKAP17A Missense_Mutation p.E12Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LH-01 X 17744255 17744255 G A NHS Missense_Mutation p.E656K 0.33 deleterious(0.01) possibly_damaging(0.61) TCGA-IR-A3LH-01 X 23411482 23411482 C T PTCHD1 Missense_Mutation p.S616F 0.20 deleterious(0.03) benign(0.303) TCGA-IR-A3LH-01 X 26213649 26213649 G A MAGEB6 3'UTR 0.19 TCGA-IR-A3LH-01 X 3030566 3030566 C T ARSF Missense_Mutation p.S581F 0.17 deleterious(0.01) benign(0.197) TCGA-IR-A3LH-01 X 30872550 30872550 G A TAB3 Missense_Mutation p.S411L 0.14 deleterious(0.02) probably_damaging(0.983) TCGA-IR-A3LH-01 X 3239578 3239578 G C MXRA5 Nonsense_Mutation p.S1383* 0.27 TCGA-IR-A3LH-01 X 33229516 33229516 G C DMD 5'UTR 0.26 TCGA-IR-A3LH-01 X 37545231 37545231 C T XK Missense_Mutation p.S6L 0.19 deleterious(0) probably_damaging(0.99) TCGA-IR-A3LH-01 X 37642818 37642818 C T CYBB Nonsense_Mutation p.R73* 0.17 TCGA-IR-A3LH-01 X 38132722 38132722 G A TM4SF2 Intron 0.18 TCGA-IR-A3LH-01 X 38158229 38158229 G A RPGR Missense_Mutation p.R409C 0.21 probably_damaging(1) TCGA-IR-A3LH-01 X 38211866 38211866 C A OTC 5'UTR 0.24 TCGA-IR-A3LH-01 X 40541888 40541888 C G MED14 Missense_Mutation p.E778Q 0.24 tolerated(0.56) benign(0.003) TCGA-IR-A3LH-01 X 47432361 47432361 C G SYN1 Missense_Mutation p.E674Q 0.29 tolerated(0.08) benign(0.064) TCGA-IR-A3LH-01 X 48976168 48976168 C A GPKOW Splice_Site p.X153_splice 0.20 TCGA-IR-A3LH-01 X 50377022 50377022 C T SHROOM4 Missense_Mutation p.R684Q 0.17 tolerated(0.51) benign(0.001) TCGA-IR-A3LH-01 X 51639896 51639896 C G MAGED1 Missense_Mutation p.T438S 0.21 tolerated_low_confidence(0.2) unknown(0) TCGA-IR-A3LH-01 X 51644958 51644958 C T MAGED1 Missense_Mutation p.P813S 0.56 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-IR-A3LH-01 X 53439973 53439973 G C SMC1A Nonsense_Mutation p.S244* 0.19 TCGA-IR-A3LH-01 X 53615422 53615422 C G HUWE1 Missense_Mutation p.E1512Q 0.27 possibly_damaging(0.714) TCGA-IR-A3LH-01 X 54264792 54264792 G A WNK3 Nonsense_Mutation p.Q1333* 0.33 TCGA-IR-A3LH-01 X 54984742 54984742 G A PFKFB1 Silent p.I171I 0.30 TCGA-IR-A3LH-01 X 63412870 63412870 C T AMER1 Silent p.L99L 0.15 TCGA-IR-A3LH-01 X 64960016 64960016 C G MSN 3'UTR 0.23 TCGA-IR-A3LH-01 X 66765338 66765338 C T AR Missense_Mutation p.S117L 0.19 tolerated_low_confidence(0.1) benign(0.009) TCGA-IR-A3LH-01 X 67941568 67941568 G C STARD8 Missense_Mutation p.K813N 0.19 deleterious(0) probably_damaging(0.963) TCGA-IR-A3LH-01 X 69283347 69283347 C G OTUD6A 3'UTR 0.15 TCGA-IR-A3LH-01 X 69420191 69420191 C G DGAT2L6 Missense_Mutation p.I118M 0.15 deleterious(0.01) possibly_damaging(0.844) TCGA-IR-A3LH-01 X 70320631 70320631 G A FOXO4 Missense_Mutation p.G184E 0.17 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LH-01 X 70341573 70341573 C G MED12 Silent p.P336P 0.23 TCGA-IR-A3LH-01 X 73752137 73752137 C T SLC16A2 3'UTR 0.21 TCGA-IR-A3LH-01 X 73958544 73958544 C G KIAA2022 3'UTR 0.20 TCGA-IR-A3LH-01 X 79286502 79286502 G C TBX22 Silent p.L485L 0.17 TCGA-IR-A3LH-01 X 79999748 79999748 G A BRWD3 Missense_Mutation p.S199L 0.19 deleterious(0) benign(0.33) TCGA-IR-A3LH-01 X 85404062 85404062 C G DACH2 Silent p.L146L 0.24 TCGA-IR-A3LH-01 X 86873003 86873003 C G KLHL4 Missense_Mutation p.Q266E 0.20 tolerated(0.89) benign(0.12) TCGA-IR-A3LH-01 X 92928474 92928474 G A NAP1L3 5'UTR 0.15 TCGA-IR-A3LH-01 X 92966133 92966133 C - FAM133A 3'UTR 0.16 TCGA-IR-A3LH-01 X 9684600 9684600 G A TBL1X 3'UTR 0.14 TCGA-IR-A3LI-01 10 102057296 102057296 C T PKD2L1 Missense_Mutation p.G267R 0.55 deleterious(0) probably_damaging(1) TCGA-IR-A3LI-01 10 102672724 102672724 C T FAM178A 5'Flank 0.39 TCGA-IR-A3LI-01 10 106118345 106118345 C T CCDC147 Nonsense_Mutation p.Q86* 0.23 TCGA-IR-A3LI-01 10 115947675 115947675 G C TDRD1 Missense_Mutation p.E29Q 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-IR-A3LI-01 10 11997477 11997477 G A UPF2 Silent p.R868R 0.41 TCGA-IR-A3LI-01 10 124191257 124191257 G A PLEKHA1 3'UTR 0.16 TCGA-IR-A3LI-01 10 127455406 127455406 G A MMP21 Missense_Mutation p.S512F 0.08 deleterious(0) probably_damaging(0.98) TCGA-IR-A3LI-01 10 129903836 129903836 C T MKI67 Missense_Mutation p.E2090K 0.38 tolerated(1) benign(0.076) TCGA-IR-A3LI-01 10 13658486 13658486 G A RP11-295P9.3 Missense_Mutation p.R171K 0.42 deleterious(0.03) probably_damaging(0.953) TCGA-IR-A3LI-01 10 22618337 22618337 C T COMMD3-BMI1 Missense_Mutation p.H426Y 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-IR-A3LI-01 10 27499848 27499848 C T ACBD5 Missense_Mutation p.E367K 0.08 tolerated(0.16) probably_damaging(0.999) TCGA-IR-A3LI-01 10 28378730 28378730 C G MPP7 Missense_Mutation p.K331N 0.45 tolerated(0.1) benign(0.138) TCGA-IR-A3LI-01 10 44139651 44139651 C T ZNF32 Silent p.R223R 0.49 TCGA-IR-A3LI-01 10 50594723 50594723 C T DRGX Intron 0.09 TCGA-IR-A3LI-01 10 55582734 55582734 C T PCDH15 Silent p.L1586L 0.18 TCGA-IR-A3LI-01 10 61566793 61566793 C T CCDC6 Missense_Mutation p.M297I 0.32 tolerated(1) benign(0.011) TCGA-IR-A3LI-01 10 64135973 64135973 G A ZNF365 Silent p.E7E 0.47 TCGA-IR-A3LI-01 10 73269977 73269977 G A CDH23-AS1 Intron 0.49 TCGA-IR-A3LI-01 10 86278074 86278074 G A CCSER2 3'UTR 0.25 TCGA-IR-A3LI-01 10 876851 876851 C T LARP4B Missense_Mutation p.D273N 0.18 tolerated(0.31) probably_damaging(0.972) TCGA-IR-A3LI-01 10 88811555 88811555 C G GLUD1 Missense_Mutation p.E544Q 0.43 tolerated(0.06) possibly_damaging(0.603) TCGA-IR-A3LI-01 10 98742623 98742623 G T C10orf12 Missense_Mutation p.K492N 0.26 deleterious(0) probably_damaging(0.968) TCGA-IR-A3LI-01 10 99238091 99238091 G A MMS19 Silent p.I106I 0.26 TCGA-IR-A3LI-01 11 10821818 10821818 A C EIF4G2 Missense_Mutation p.F646L 0.35 tolerated(0.51) benign(0.147) TCGA-IR-A3LI-01 11 112119581 112119581 G A PLET1 Missense_Mutation p.P189S 0.23 tolerated(0.15) probably_damaging(0.932) TCGA-IR-A3LI-01 11 117947943 117947943 G C TMPRSS4 5'UTR 0.30 TCGA-IR-A3LI-01 11 120291541 120291541 C T ARHGEF12 Silent p.F93F 0.83 TCGA-IR-A3LI-01 11 121031101 121031101 G A TECTA Silent p.Q1649Q 0.17 TCGA-IR-A3LI-01 11 4661050 4661050 C T OR51D1 Silent p.I10I 0.45 TCGA-IR-A3LI-01 11 46637297 46637297 G C HARBI1 Missense_Mutation p.S164C 0.27 tolerated(0.21) benign(0.148) TCGA-IR-A3LI-01 11 47602402 47602402 G A NDUFS3 Missense_Mutation p.E83K 0.10 deleterious(0) probably_damaging(0.94) TCGA-IR-A3LI-01 11 55595001 55595001 T C OR5L2 Silent p.L103L 0.35 TCGA-IR-A3LI-01 11 57982597 57982597 C G OR1S1 Silent p.L127L 0.41 TCGA-IR-A3LI-01 11 61503241 61503241 G C DAGLA Missense_Mutation p.E415Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LI-01 11 64807250 64807250 C G SNX15 Missense_Mutation p.Q339E 0.35 deleterious_low_confidence(0.02) benign(0.01) TCGA-IR-A3LI-01 11 65685220 65685220 G C C11orf68 Missense_Mutation p.Q198E 0.41 tolerated(0.81) benign(0.189) TCGA-IR-A3LI-01 11 67131641 67131641 C G CLCF1 3'UTR 0.45 TCGA-IR-A3LI-01 11 68312351 68312351 G A PPP6R3 Silent p.Q91Q 0.21 TCGA-IR-A3LI-01 11 7083724 7083724 C T NLRP14 Nonsense_Mutation p.Q989* 0.40 TCGA-IR-A3LI-01 11 76892542 76892542 C G MYO7A Silent p.V937V 0.34 TCGA-IR-A3LI-01 11 77033591 77033591 C G PAK1 3'Flank 0.47 TCGA-IR-A3LI-01 11 77034236 77034236 G C PAK1 3'UTR 0.50 TCGA-IR-A3LI-01 12 100550804 100550804 G C AC010203.1 3'Flank 0.48 TCGA-IR-A3LI-01 12 10134688 10134688 C T CLEC12A Missense_Mutation p.R211C 0.11 tolerated(0.05) benign(0.116) TCGA-IR-A3LI-01 12 101437344 101437344 C T ANO4 Silent p.I359I 0.35 TCGA-IR-A3LI-01 12 106773811 106773811 C G POLR3B Missense_Mutation p.S206C 0.20 deleterious(0) possibly_damaging(0.751) TCGA-IR-A3LI-01 12 107109195 107109195 C G RFX4 Missense_Mutation p.I346M 0.40 deleterious(0) benign(0.246) TCGA-IR-A3LI-01 12 111892862 111892862 G A ATXN2 Intron 0.41 TCGA-IR-A3LI-01 12 112681469 112681469 C T HECTD4 Silent p.L1436L 0.40 TCGA-IR-A3LI-01 12 112686184 112686184 T C HECTD4 Silent p.L1215L 0.42 TCGA-IR-A3LI-01 12 120648617 120648617 G A PXN 3'UTR 0.42 TCGA-IR-A3LI-01 12 123467177 123467177 G A ARL6IP4 Missense_Mutation p.R346Q 0.56 deleterious_low_confidence(0.03) benign(0.258) TCGA-IR-A3LI-01 12 123702952 123702952 C G MPHOSPH9 Missense_Mutation p.E171Q 0.50 tolerated(0.1) benign(0.046) TCGA-IR-A3LI-01 12 124359784 124359784 G A DNAH10 Missense_Mutation p.E2531K 0.43 benign(0.021) TCGA-IR-A3LI-01 12 129299439 129299439 G A SLC15A4 Silent p.L241L 0.41 TCGA-IR-A3LI-01 12 130916773 130916773 C T RIMBP2 Intron 0.15 TCGA-IR-A3LI-01 12 2968332 2968332 G C FOXM1 Silent p.L626L 0.43 TCGA-IR-A3LI-01 12 4414021 4414021 C T CCND2 3'UTR 0.53 TCGA-IR-A3LI-01 12 47629918 47629918 G A PCED1B Missense_Mutation p.D358N 0.14 deleterious(0.05) benign(0.435) TCGA-IR-A3LI-01 12 49332314 49332314 G C ARF3 3'UTR 0.44 TCGA-IR-A3LI-01 12 49888630 49888630 C T SPATS2 Missense_Mutation p.S124L 0.10 tolerated(0.17) benign(0.065) TCGA-IR-A3LI-01 12 49919880 49919880 C G SPATS2 Missense_Mutation p.Q494E 0.52 tolerated(0.09) benign(0.08) TCGA-IR-A3LI-01 12 51503033 51503033 G T TFCP2 Missense_Mutation p.F196L 0.39 deleterious(0.02) possibly_damaging(0.859) TCGA-IR-A3LI-01 12 5154481 5154481 G A KCNA5 Missense_Mutation p.G390R 0.29 deleterious(0.04) probably_damaging(0.943) TCGA-IR-A3LI-01 12 52841348 52841348 G A KRT6B Silent p.G478G 0.50 TCGA-IR-A3LI-01 12 52842665 52842665 G A KRT6B Silent p.I388I 0.53 TCGA-IR-A3LI-01 12 53170949 53170949 C T KRT76 Missense_Mutation p.A43T 0.13 deleterious(0.05) unknown(0) TCGA-IR-A3LI-01 12 53458759 53458759 C T SPRYD3 3'UTR 0.39 TCGA-IR-A3LI-01 12 54635533 54635533 C T CBX5 3'UTR 0.38 TCGA-IR-A3LI-01 12 56429926 56429926 C T IKZF4 3'UTR 0.18 TCGA-IR-A3LI-01 12 64410757 64410757 G T SRGAP1 Nonsense_Mutation p.E152* 0.50 TCGA-IR-A3LI-01 12 6761909 6761909 G T ING4 Missense_Mutation p.A140D 0.36 tolerated(0.28) benign(0.002) TCGA-IR-A3LI-01 12 6981681 6981681 C T SPSB2 Missense_Mutation p.E129K 0.47 deleterious(0.05) probably_damaging(0.998) TCGA-IR-A3LI-01 12 7027223 7027223 C G ENO2 Silent p.V188V 0.10 TCGA-IR-A3LI-01 12 7027274 7027274 C A ENO2 Silent p.T205T 0.17 TCGA-IR-A3LI-01 12 74933422 74933422 C T ATXN7L3B 3'UTR 0.45 TCGA-IR-A3LI-01 12 992678 992678 G A WNK1 Missense_Mutation p.D1203N 0.47 deleterious(0.01) benign(0.136) TCGA-IR-A3LI-01 13 111531064 111531064 G A ANKRD10 3'UTR 0.10 TCGA-IR-A3LI-01 13 25444740 25444740 C G RNF17 Missense_Mutation p.S1437C 0.11 tolerated(0.36) benign(0.001) TCGA-IR-A3LI-01 13 52606712 52606712 C T UTP14C 3'UTR 0.13 TCGA-IR-A3LI-01 13 96293740 96293740 C G DZIP1 Missense_Mutation p.E136Q 0.33 deleterious(0) probably_damaging(0.982) TCGA-IR-A3LI-01 14 101348269 101348269 C T RTL1 Missense_Mutation p.D953N 0.53 tolerated(0.41) probably_damaging(0.999) TCGA-IR-A3LI-01 14 103400107 103400107 G C CDC42BPB Missense_Mutation p.S1693C 0.37 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IR-A3LI-01 14 103400155 103400155 G C CDC42BPB Nonsense_Mutation p.S1677* 0.35 TCGA-IR-A3LI-01 14 105413073 105413073 C G AHNAK2 Missense_Mutation p.K2905N 0.40 probably_damaging(0.994) TCGA-IR-A3LI-01 14 106725235 106725235 C T IGHV3-23 Missense_Mutation p.R106K 0.18 tolerated_low_confidence(0.36) benign(0.032) TCGA-IR-A3LI-01 14 19377728 19377728 C T OR11H12 Silent p.L45L 0.43 TCGA-IR-A3LI-01 14 44974138 44974138 G A FSCB Silent p.L685L 0.45 TCGA-IR-A3LI-01 14 57740978 57740978 G A AP5M1 Missense_Mutation p.E31K 0.25 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LI-01 14 60921816 60921816 G C C14orf39 Missense_Mutation p.S469C 0.68 deleterious(0) probably_damaging(0.938) TCGA-IR-A3LI-01 14 61442487 61442487 C A TRMT5 Missense_Mutation p.V384F 0.06 tolerated(0.1) benign(0.083) TCGA-IR-A3LI-01 14 64593336 64593336 G A SYNE2 Silent p.K4576K 0.52 TCGA-IR-A3LI-01 14 68042668 68042668 C G PLEKHH1 Missense_Mutation p.I766M 0.50 deleterious(0.01) possibly_damaging(0.897) TCGA-IR-A3LI-01 14 73759577 73759577 G A NUMB Silent p.L105L 0.51 TCGA-IR-A3LI-01 14 74425035 74425035 G C ENTPD5 3'Flank 0.44 TCGA-IR-A3LI-01 14 95053975 95053975 G A SERPINA5 Silent p.L92L 0.30 TCGA-IR-A3LI-01 14 95081043 95081043 C T SERPINA3 Silent p.L89L 0.24 TCGA-IR-A3LI-01 15 24926213 24926213 G A NPAP1 3'UTR 0.47 TCGA-IR-A3LI-01 15 32907720 32907720 G A ARHGAP11A 5'UTR 0.60 TCGA-IR-A3LI-01 15 33025088 33025088 C T GREM1 3'UTR 0.22 TCGA-IR-A3LI-01 15 35085533 35085533 G A ACTC1 Nonsense_Mutation p.Q123* 0.37 TCGA-IR-A3LI-01 15 43813757 43813757 C T MAP1A Missense_Mutation p.S29L 0.41 probably_damaging(0.919) TCGA-IR-A3LI-01 15 43815050 43815050 C G MAP1A Missense_Mutation p.S460C 0.46 probably_damaging(0.957) TCGA-IR-A3LI-01 15 43815251 43815251 C T MAP1A Missense_Mutation p.S527L 0.50 probably_damaging(0.998) TCGA-IR-A3LI-01 15 44063513 44063513 C G PDIA3 3'UTR 0.53 TCGA-IR-A3LI-01 15 44097192 44097192 C G MFAP1 3'UTR 0.31 TCGA-IR-A3LI-01 15 48584057 48584057 G A SLC12A1 Missense_Mutation p.E986K 0.31 tolerated(0.33) possibly_damaging(0.733) TCGA-IR-A3LI-01 15 50152539 50152539 G C ATP8B4 Missense_Mutation p.S1144C 0.43 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LI-01 15 50776513 50776513 G A USP8 Silent p.R615R 0.43 TCGA-IR-A3LI-01 15 60803666 60803666 C T RORA Silent p.L226L 0.11 TCGA-IR-A3LI-01 15 65744405 65744405 G C DPP8 Missense_Mutation p.I785M 0.52 tolerated(0.29) benign(0.048) TCGA-IR-A3LI-01 15 65868942 65868942 C G PTPLAD1 3'UTR 0.33 TCGA-IR-A3LI-01 15 65983274 65983274 C T DENND4A Missense_Mutation p.E1219K 0.52 deleterious(0.01) possibly_damaging(0.87) TCGA-IR-A3LI-01 15 68624304 68624304 C T ITGA11 Missense_Mutation p.D555N 0.45 deleterious(0.01) possibly_damaging(0.895) TCGA-IR-A3LI-01 15 68649528 68649528 C T ITGA11 Missense_Mutation p.G237E 0.43 deleterious(0) probably_damaging(1) TCGA-IR-A3LI-01 15 72958313 72958313 C T GOLGA6B Intron 0.16 TCGA-IR-A3LI-01 15 76074660 76074660 G T RN7SL319P 5'Flank 0.18 TCGA-IR-A3LI-01 15 76629157 76629157 G A ISL2 5'UTR 0.38 TCGA-IR-A3LI-01 16 1463963 1463963 G A UNKL Silent p.F57F 0.39 TCGA-IR-A3LI-01 16 15022324 15022324 G C RP11-958N24.1 RNA 0.11 TCGA-IR-A3LI-01 16 21215375 21215375 G T ZP2 Missense_Mutation p.F316L 0.38 tolerated(0.06) probably_damaging(0.927) TCGA-IR-A3LI-01 16 21215708 21215708 G A ZP2 Silent p.L237L 0.38 TCGA-IR-A3LI-01 16 29912347 29912347 G C ASPHD1 Missense_Mutation p.E19Q 0.35 deleterious_low_confidence(0) benign(0.013) TCGA-IR-A3LI-01 16 30793010 30793010 G C ZNF629 3'UTR 0.53 TCGA-IR-A3LI-01 16 3335110 3335110 C T ZNF263 Silent p.L147L 0.55 TCGA-IR-A3LI-01 16 3594300 3594300 C G NLRC3 Missense_Mutation p.G980A 0.37 deleterious(0.04) possibly_damaging(0.9) TCGA-IR-A3LI-01 16 4410478 4410478 G A CORO7 Silent p.V663V 0.45 TCGA-IR-A3LI-01 16 4625056 4625056 C T C16orf96 Silent p.T230T 0.44 TCGA-IR-A3LI-01 16 57416511 57416511 C T CX3CL1 Missense_Mutation p.P254L 0.50 tolerated(0.13) benign(0.018) TCGA-IR-A3LI-01 16 57741510 57741510 G T CCDC135 Nonsense_Mutation p.E333* 0.53 TCGA-IR-A3LI-01 16 67208229 67208229 G C NOL3 Missense_Mutation p.D53H 0.15 deleterious(0) probably_damaging(1) TCGA-IR-A3LI-01 16 67899060 67899060 G C NUTF2 Missense_Mutation p.Q9H 0.48 tolerated(0.15) benign(0.003) TCGA-IR-A3LI-01 16 71798269 71798269 G C AP1G1 Nonsense_Mutation p.S304* 0.76 TCGA-IR-A3LI-01 16 787284 787284 C T NARFL Missense_Mutation p.D70N 0.40 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LI-01 16 81295871 81295871 C T BCMO1 Silent p.L152L 0.44 TCGA-IR-A3LI-01 16 87339346 87339346 G A C16orf95 Missense_Mutation p.P227L 0.50 tolerated(1) benign(0) TCGA-IR-A3LI-01 16 89623345 89623345 G A SPG7 Silent p.E744E 0.46 TCGA-IR-A3LI-01 16 89762071 89762071 G A CDK10 Missense_Mutation p.E352K 0.48 tolerated(0.08) benign(0.018) TCGA-IR-A3LI-01 17 16723983 16723983 G A AC022596.6 RNA 0.47 TCGA-IR-A3LI-01 17 26970655 26970655 G A KIAA0100 Missense_Mutation p.S74F 0.46 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LI-01 17 27959008 27959008 C T SSH2 Silent p.L1041L 0.16 TCGA-IR-A3LI-01 17 29701694 29701694 G T NF1 3'UTR 0.32 TCGA-IR-A3LI-01 17 33879989 33879989 G C SLFN14 Missense_Mutation p.S555C 0.63 deleterious(0.01) probably_damaging(0.935) TCGA-IR-A3LI-01 17 37034359 37034359 C G LASP1 Missense_Mutation p.F30L 0.16 deleterious(0) possibly_damaging(0.71) TCGA-IR-A3LI-01 17 37420631 37420631 G C FBXL20 Missense_Mutation p.H334D 0.09 deleterious(0) possibly_damaging(0.475) TCGA-IR-A3LI-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.49 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LI-01 17 38992169 38992169 G A TMEM99 3'UTR 0.39 TCGA-IR-A3LI-01 17 39644584 39644584 C G KRT36 Missense_Mutation p.D204H 0.28 deleterious(0) probably_damaging(1) TCGA-IR-A3LI-01 17 39673157 39673157 C T KRT15 Missense_Mutation p.R214Q 0.44 deleterious(0) probably_damaging(0.958) TCGA-IR-A3LI-01 17 44068843 44068843 G A MAPT Silent p.T466T 0.48 TCGA-IR-A3LI-01 17 44105554 44105554 G A MAPT 3'UTR 0.25 TCGA-IR-A3LI-01 17 46138017 46138017 G A NFE2L1 3'UTR 0.56 TCGA-IR-A3LI-01 17 46653199 46653199 C T HOXB4 3'UTR 0.50 TCGA-IR-A3LI-01 17 47656636 47656636 G C NXPH3 Missense_Mutation p.D245H 0.33 deleterious(0) possibly_damaging(0.853) TCGA-IR-A3LI-01 17 4794980 4794980 G A MINK1 Nonsense_Mutation p.W657* 0.12 TCGA-IR-A3LI-01 17 5358555 5358555 C T DHX33 Missense_Mutation p.E358K 0.09 deleterious(0) probably_damaging(1) TCGA-IR-A3LI-01 17 56661914 56661914 C A TEX14 Nonsense_Mutation p.E1046* 0.31 TCGA-IR-A3LI-01 17 56679877 56679877 C T TEX14 Missense_Mutation p.D477N 0.21 deleterious(0) probably_damaging(1) TCGA-IR-A3LI-01 17 62533224 62533224 G A CEP95 Silent p.Q761Q 0.42 TCGA-IR-A3LI-01 17 62746746 62746746 C G hsa-mir-6080 RNA 0.44 TCGA-IR-A3LI-01 17 63739336 63739336 C T CEP112 Splice_Site p.X820_splice 0.32 TCGA-IR-A3LI-01 17 7329892 7329892 G A C17orf74 Silent p.P194P 0.49 TCGA-IR-A3LI-01 17 73842714 73842714 G A WBP2 3'UTR 0.44 TCGA-IR-A3LI-01 17 75398515 75398515 G A SEPT9 Missense_Mutation p.E151K 0.38 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-IR-A3LI-01 17 7674219 7674219 C G DNAH2 Missense_Mutation p.L1444V 0.50 probably_damaging(0.967) TCGA-IR-A3LI-01 17 76970878 76970878 C A LGALS3BP Nonsense_Mutation p.E90* 0.11 TCGA-IR-A3LI-01 17 79098591 79098591 C T AATK Missense_Mutation p.E300K 0.49 deleterious(0) possibly_damaging(0.803) TCGA-IR-A3LI-01 17 79632238 79632238 C T OXLD1 Missense_Mutation p.G146E 0.43 deleterious(0) possibly_damaging(0.904) TCGA-IR-A3LI-01 17 79633772 79633772 C T CCDC137 5'UTR 0.44 TCGA-IR-A3LI-01 17 8064106 8064106 G C VAMP2 3'UTR 0.25 TCGA-IR-A3LI-01 18 21033369 21033369 C T RIOK3 5'UTR 0.40 TCGA-IR-A3LI-01 18 32954014 32954014 C T ZNF396 Silent p.L81L 0.13 TCGA-IR-A3LI-01 18 724573 724573 G A YES1 Nonsense_Mutation p.Q495* 0.28 TCGA-IR-A3LI-01 18 9513018 9513018 C T RALBP1 5'UTR 0.51 TCGA-IR-A3LI-01 19 10428107 10428107 G C RAVER1 3'UTR 0.42 TCGA-IR-A3LI-01 19 10754060 10754060 G A SLC44A2 Silent p.%3D 0.24 TCGA-IR-A3LI-01 19 11038333 11038333 C G YIPF2 Missense_Mutation p.Q84H 0.23 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LI-01 19 11545671 11545671 C T CCDC151 Missense_Mutation p.G56E 0.50 deleterious(0.05) benign(0.022) TCGA-IR-A3LI-01 19 12155702 12155702 C T ZNF878 Missense_Mutation p.E172K 0.13 tolerated(0.68) benign(0.008) TCGA-IR-A3LI-01 19 12637494 12637494 G C ZNF564 Silent p.P476P 0.37 TCGA-IR-A3LI-01 19 12637736 12637736 G C ZNF564 Missense_Mutation p.Q396E 0.24 tolerated(0.06) benign(0.006) TCGA-IR-A3LI-01 19 12638687 12638687 G C ZNF564 Missense_Mutation p.Q79E 0.37 tolerated(0.07) benign(0.025) TCGA-IR-A3LI-01 19 12758053 12758053 T G MAN2B1 Missense_Mutation p.N973H 0.24 tolerated(0.13) benign(0.035) TCGA-IR-A3LI-01 19 12758083 12758083 C T MAN2B1 Missense_Mutation p.E963K 0.26 tolerated(0.61) benign(0.028) TCGA-IR-A3LI-01 19 13064973 13064973 C A GADD45GIP1 3'UTR 0.10 TCGA-IR-A3LI-01 19 1430288 1430288 C T DAZAP1 Silent p.I266I 0.50 TCGA-IR-A3LI-01 19 1465202 1465202 G C APC2 Silent p.L634L 0.50 TCGA-IR-A3LI-01 19 1556729 1556729 G A MEX3D Silent p.A263A 0.15 TCGA-IR-A3LI-01 19 19905766 19905766 C G ZNF506 Missense_Mutation p.E310D 0.50 deleterious(0.03) benign(0.006) TCGA-IR-A3LI-01 19 31038887 31038887 C T ZNF536 Silent p.A787A 0.43 TCGA-IR-A3LI-01 19 35625543 35625543 C T LGI4 Silent p.A14A 0.53 TCGA-IR-A3LI-01 19 36593869 36593869 C T WDR62 Missense_Mutation p.P1119S 0.39 tolerated(0.39) benign(0.011) TCGA-IR-A3LI-01 19 37961245 37961245 G T ZNF570 5'UTR 0.25 TCGA-IR-A3LI-01 19 37961255 37961255 G T ZNF570 5'UTR 0.27 TCGA-IR-A3LI-01 19 37975793 37975793 C G ZNF570 Missense_Mutation p.F423L 0.36 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LI-01 19 38800353 38800353 C A YIF1B Intron 0.71 TCGA-IR-A3LI-01 19 42558573 42558573 G A GRIK5 Nonsense_Mutation p.R319* 0.41 TCGA-IR-A3LI-01 19 42820703 42820703 G A TMEM145 Silent p.V239V 0.17 TCGA-IR-A3LI-01 19 42882888 42882888 G A MEGF8 3'UTR 0.54 TCGA-IR-A3LI-01 19 4433403 4433403 C T CHAF1A Missense_Mutation p.S847L 0.29 deleterious(0.02) possibly_damaging(0.636) TCGA-IR-A3LI-01 19 45392134 45392134 C T PVRL2 3'UTR 0.13 TCGA-IR-A3LI-01 19 45976112 45976112 C G FOSB Missense_Mutation p.Q287E 0.44 tolerated(1) benign(0.06) TCGA-IR-A3LI-01 19 46268897 46268897 C T SIX5 Silent p.L694L 0.50 TCGA-IR-A3LI-01 19 46268958 46268958 C T SIX5 Missense_Mutation p.G674E 0.46 deleterious(0.01) probably_damaging(0.96) TCGA-IR-A3LI-01 19 46271604 46271604 C T SIX5 Missense_Mutation p.A167T 0.56 deleterious(0) probably_damaging(0.99) TCGA-IR-A3LI-01 19 48908030 48908030 G A GRIN2D Missense_Mutation p.E169K 0.53 tolerated(0.15) benign(0.046) TCGA-IR-A3LI-01 19 4891274 4891274 G A ARRDC5 Silent p.F271F 0.10 TCGA-IR-A3LI-01 19 49652868 49652868 G A PPFIA3 Missense_Mutation p.R1140Q 0.14 tolerated_low_confidence(0.05) probably_damaging(0.996) TCGA-IR-A3LI-01 19 49656988 49656988 C G HRC Missense_Mutation p.E503Q 0.48 tolerated(0.09) probably_damaging(0.959) TCGA-IR-A3LI-01 19 49657295 49657295 C G HRC Missense_Mutation p.K400N 0.49 deleterious(0.03) possibly_damaging(0.786) TCGA-IR-A3LI-01 19 50342092 50342092 G C MED25 3'Flank 0.42 TCGA-IR-A3LI-01 19 50386048 50386048 G A TBC1D17 Missense_Mutation p.E276K 0.62 tolerated(0.71) benign(0.002) TCGA-IR-A3LI-01 19 51133404 51133404 G A SYT3 Silent p.L233L 0.22 TCGA-IR-A3LI-01 19 51631765 51631765 C T SIGLEC9 Nonsense_Mutation p.Q401* 0.12 TCGA-IR-A3LI-01 19 52115604 52115604 C T SIGLEC5 Silent p.L512L 0.44 TCGA-IR-A3LI-01 19 53303790 53303790 C T ZNF28 Silent p.E436E 0.16 TCGA-IR-A3LI-01 19 53958209 53958209 G A ZNF761 RNA 0.37 TCGA-IR-A3LI-01 19 54783478 54783478 G A LILRB2 Missense_Mutation p.S127L 0.10 tolerated(0.09) benign(0.258) TCGA-IR-A3LI-01 19 55898578 55898578 C T RPL28 Intron 0.59 TCGA-IR-A3LI-01 19 5786512 5786512 T A DUS3L Missense_Mutation p.M510L 0.29 tolerated(0.58) benign(0.002) TCGA-IR-A3LI-01 19 58050415 58050415 C T ZNF549 3'UTR 0.33 TCGA-IR-A3LI-01 19 7528832 7528832 C T ARHGEF18 Missense_Mutation p.P734S 0.41 tolerated(0.17) benign(0.006) TCGA-IR-A3LI-01 19 9047945 9047945 G C MUC16 Nonsense_Mutation p.S11229* 0.10 TCGA-IR-A3LI-01 1 102462549 102462549 G A OLFM3 5'UTR 0.12 TCGA-IR-A3LI-01 1 10441322 10441322 C G KIF1B 3'Flank 0.39 TCGA-IR-A3LI-01 1 109264980 109264980 C A FNDC7 Missense_Mutation p.Q208K 0.38 tolerated(0.43) benign(0.011) TCGA-IR-A3LI-01 1 109815472 109815472 G A CELSR2 Missense_Mutation p.D2721N 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-IR-A3LI-01 1 111060863 111060863 C T KCNA10 Missense_Mutation p.E183K 0.42 deleterious(0.02) benign(0.12) TCGA-IR-A3LI-01 1 112270351 112270351 G T FAM212B Missense_Mutation p.L45I 0.47 deleterious(0.04) probably_damaging(0.999) TCGA-IR-A3LI-01 1 118526482 118526482 C G SPAG17 Missense_Mutation p.E1942Q 0.35 tolerated(0.12) benign(0.067) TCGA-IR-A3LI-01 1 120458453 120458453 G A NOTCH2 Missense_Mutation p.R2298W 0.46 deleterious(0.01) possibly_damaging(0.863) TCGA-IR-A3LI-01 1 144952297 144952297 G A PDE4DIP Missense_Mutation p.S141L 0.11 deleterious(0.01) benign(0.087) TCGA-IR-A3LI-01 1 145293253 145293253 C T NBPF10 5'Flank 0.06 TCGA-IR-A3LI-01 1 146408047 146408047 G C NBPF12 Missense_Mutation p.E561Q 0.68 possibly_damaging(0.839) TCGA-IR-A3LI-01 1 151149103 151149103 G C VPS72 3'UTR 0.30 TCGA-IR-A3LI-01 1 151149160 151149160 G A VPS72 Missense_Mutation p.S363F 0.37 tolerated_low_confidence(0.05) benign(0.224) TCGA-IR-A3LI-01 1 151733963 151733963 C T MRPL9 Silent p.L184L 0.40 TCGA-IR-A3LI-01 1 152681528 152681528 C T LCE4A Intron 0.28 TCGA-IR-A3LI-01 1 152759813 152759824 CTCCCAAGTGCA - LCE1E In_Frame_Del p.T17_C20del 0.27 TCGA-IR-A3LI-01 1 153780366 153780366 G A GATAD2B 3'UTR 0.21 TCGA-IR-A3LI-01 1 153905691 153905691 G A DENND4B Silent p.F1145F 0.11 TCGA-IR-A3LI-01 1 154226534 154226534 C T UBAP2L Missense_Mutation p.S608L 0.14 tolerated(0.11) benign(0.184) TCGA-IR-A3LI-01 1 154241393 154241393 C T UBAP2L Missense_Mutation p.S1044F 0.34 deleterious(0) possibly_damaging(0.86) TCGA-IR-A3LI-01 1 155020577 155020577 G A DCST1 Silent p.K600K 0.25 TCGA-IR-A3LI-01 1 155932757 155932757 G A ARHGEF2 Silent p.V314V 0.09 TCGA-IR-A3LI-01 1 156024646 156024646 C T LAMTOR2 5'UTR 0.21 TCGA-IR-A3LI-01 1 156163946 156163946 C T SLC25A44 5'UTR 0.34 TCGA-IR-A3LI-01 1 156444993 156444993 G A MEF2D Missense_Mutation p.H305Y 0.26 deleterious(0) benign(0.424) TCGA-IR-A3LI-01 1 156524141 156524141 G A IQGAP3 Missense_Mutation p.S445L 0.09 deleterious(0.02) possibly_damaging(0.78) TCGA-IR-A3LI-01 1 158735560 158735560 G A OR6N1 Silent p.L305L 0.28 TCGA-IR-A3LI-01 1 158735609 158735609 G A OR6N1 Silent p.F288F 0.27 TCGA-IR-A3LI-01 1 158736267 158736267 G A OR6N1 Missense_Mutation p.S69L 0.20 tolerated(1) benign(0) TCGA-IR-A3LI-01 1 158736386 158736386 G A OR6N1 Silent p.L29L 0.29 TCGA-IR-A3LI-01 1 161016827 161016827 G C ARHGAP30 3'UTR 0.38 TCGA-IR-A3LI-01 1 16358720 16358720 C T CLCNKA Silent p.I593I 0.52 TCGA-IR-A3LI-01 1 16383428 16383428 G A CLCNKB 3'UTR 0.11 TCGA-IR-A3LI-01 1 164761826 164761826 G C PBX1 Missense_Mutation p.E121Q 0.31 tolerated(0.08) probably_damaging(0.943) TCGA-IR-A3LI-01 1 169434864 169434864 T G SLC19A2 3'UTR 0.30 TCGA-IR-A3LI-01 1 170699449 170699449 G A PRRX1 Intron 0.17 TCGA-IR-A3LI-01 1 175086232 175086232 G A TNN Silent p.Q759Q 0.12 TCGA-IR-A3LI-01 1 178855222 178855222 G A RALGPS2 Missense_Mutation p.E387K 0.34 tolerated(0.77) benign(0.109) TCGA-IR-A3LI-01 1 180601237 180601237 C T XPR1 5'UTR 0.35 TCGA-IR-A3LI-01 1 182555233 182555233 C G RNASEL Missense_Mutation p.E237Q 0.40 deleterious(0.01) benign(0.052) TCGA-IR-A3LI-01 1 182869349 182869349 C T SHCBP1L Silent p.L577L 0.43 TCGA-IR-A3LI-01 1 183102564 183102564 C T LAMC1 Missense_Mutation p.S1243L 0.41 tolerated(0.75) benign(0.293) TCGA-IR-A3LI-01 1 18808487 18808487 G T KLHDC7A Missense_Mutation p.D338Y 0.42 deleterious(0) possibly_damaging(0.73) TCGA-IR-A3LI-01 1 18808567 18808567 G C KLHDC7A Missense_Mutation p.E364D 0.45 tolerated(0.63) benign(0.006) TCGA-IR-A3LI-01 1 197112471 197112471 G A ASPM Missense_Mutation p.S304L 0.21 deleterious(0.02) benign(0.059) TCGA-IR-A3LI-01 1 201182067 201182067 G A IGFN1 Silent p.A2682A 0.32 TCGA-IR-A3LI-01 1 202794410 202794410 G C RP11-480I12.4 5'UTR 0.19 TCGA-IR-A3LI-01 1 202794514 202794514 G A RP11-480I12.4 5'UTR 0.21 TCGA-IR-A3LI-01 1 205128678 205128678 C T DSTYK Silent p.L745L 0.22 TCGA-IR-A3LI-01 1 206904053 206904053 G A MAPKAPK2 Missense_Mutation p.E238K 0.31 deleterious(0.02) benign(0.257) TCGA-IR-A3LI-01 1 210194437 210194437 G A SYT14 Missense_Mutation p.E139K 0.19 tolerated(0.06) probably_damaging(0.933) TCGA-IR-A3LI-01 1 213009360 213009360 C T C1orf227 Silent p.L44L 0.12 TCGA-IR-A3LI-01 1 214816201 214816201 C G CENPF Missense_Mutation p.S1507C 0.32 probably_damaging(0.994) TCGA-IR-A3LI-01 1 215760001 215760001 C T KCTD3 Nonsense_Mutation p.Q264* 0.24 TCGA-IR-A3LI-01 1 223842059 223842059 G C CAPN8 Missense_Mutation p.R94G 0.62 possibly_damaging(0.663) TCGA-IR-A3LI-01 1 224918244 224918244 G T CNIH3 Silent p.L93L 0.33 TCGA-IR-A3LI-01 1 226180117 226180117 C G SDE2 Missense_Mutation p.E168Q 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-IR-A3LI-01 1 226595704 226595704 C T PARP1 5'UTR 0.34 TCGA-IR-A3LI-01 1 22817988 22817988 C G ZBTB40 Missense_Mutation p.L265V 0.34 tolerated(0.16) benign(0.364) TCGA-IR-A3LI-01 1 228539032 228539032 G T OBSCN Missense_Mutation p.D7101Y 0.26 probably_damaging(0.943) TCGA-IR-A3LI-01 1 235944211 235944211 C G LYST Missense_Mutation p.R1723T 0.30 deleterious(0.01) benign(0.169) TCGA-IR-A3LI-01 1 23688685 23688685 C T ZNF436 Missense_Mutation p.R397Q 0.26 deleterious(0) benign(0.021) TCGA-IR-A3LI-01 1 24082354 24082354 C T TCEB3 Nonsense_Mutation p.Q631* 0.73 TCGA-IR-A3LI-01 1 244871612 244871612 G T DESI2 3'UTR 0.23 TCGA-IR-A3LI-01 1 247024352 247024352 C T AHCTF1 Silent p.P1336P 0.27 TCGA-IR-A3LI-01 1 29652207 29652207 C G PTPRU 3'Flank 0.24 TCGA-IR-A3LI-01 1 31439074 31439074 C T PUM1 Missense_Mutation p.G614E 0.47 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-IR-A3LI-01 1 32692106 32692106 G A EIF3I Missense_Mutation p.G168E 0.56 deleterious(0.03) possibly_damaging(0.567) TCGA-IR-A3LI-01 1 38078424 38078424 T C RSPO1 3'UTR 0.42 TCGA-IR-A3LI-01 1 38273135 38273135 G A C1orf122 5'Flank 0.54 TCGA-IR-A3LI-01 1 41486318 41486318 C T SLFNL1 Silent p.K5K 0.15 TCGA-IR-A3LI-01 1 51796941 51796941 C A TTC39A Intron 0.40 TCGA-IR-A3LI-01 1 51887674 51887674 C G EPS15 Intron 0.36 TCGA-IR-A3LI-01 1 53322948 53322948 C G ZYG11A Missense_Mutation p.Q179E 0.50 tolerated(0.07) benign(0.138) TCGA-IR-A3LI-01 1 53323185 53323185 C G ZYG11A Missense_Mutation p.L258V 0.33 deleterious(0.02) probably_damaging(1) TCGA-IR-A3LI-01 1 55145575 55145575 C T MROH7 Silent p.I746I 0.57 TCGA-IR-A3LI-01 1 6214792 6214792 G A CHD5 Missense_Mutation p.P225S 0.38 tolerated_low_confidence(0.08) benign(0.011) TCGA-IR-A3LI-01 1 6680211 6680211 C T PHF13 Missense_Mutation p.P164S 0.30 tolerated(0.58) benign(0) TCGA-IR-A3LI-01 1 84702998 84702998 C T PRKACB 3'UTR 0.26 TCGA-IR-A3LI-01 1 89477668 89477668 C T GBP3 Missense_Mutation p.R304K 0.49 deleterious(0.03) benign(0.001) TCGA-IR-A3LI-01 1 92495622 92495622 C T EPHX4 5'UTR 0.39 TCGA-IR-A3LI-01 1 9780069 9780069 G A PIK3CD Missense_Mutation p.V445I 0.08 tolerated(0.49) benign(0.021) TCGA-IR-A3LI-01 1 99766487 99766487 G A LPPR4 Missense_Mutation p.A253T 0.43 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LI-01 1 99772786 99772786 G C LPPR4 3'UTR 0.55 TCGA-IR-A3LI-01 20 13765679 13765679 C T NDUFAF5 5'UTR 0.41 TCGA-IR-A3LI-01 20 17434536 17434536 G C PCSK2 Missense_Mutation p.E345D 0.31 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LI-01 20 18297585 18297585 C T ZNF133 3'UTR 0.49 TCGA-IR-A3LI-01 20 25000666 25000666 G C ACSS1 Missense_Mutation p.S409C 0.38 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LI-01 20 29632705 29632705 G A FRG1B Missense_Mutation p.E174K 0.09 deleterious(0) probably_damaging(0.913) TCGA-IR-A3LI-01 20 3026354 3026354 C T GNRH2 Missense_Mutation p.P112L 0.42 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-IR-A3LI-01 20 31291139 31291139 G C COMMD7 3'UTR 0.35 TCGA-IR-A3LI-01 20 31789380 31789380 G C BPIFA4P RNA 0.45 TCGA-IR-A3LI-01 20 33328193 33328193 G A NCOA6 Missense_Mutation p.S1956F 0.44 benign(0.069) TCGA-IR-A3LI-01 20 35690616 35690616 C G RBL1 Missense_Mutation p.E318D 0.49 deleterious(0) probably_damaging(0.914) TCGA-IR-A3LI-01 20 39991134 39991134 C G EMILIN3 Missense_Mutation p.E359Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LI-01 20 43850898 43850898 G A SEMG2 Missense_Mutation p.E209K 0.16 tolerated(0.25) probably_damaging(0.994) TCGA-IR-A3LI-01 20 4764157 4764157 G C RASSF2 3'UTR 0.38 TCGA-IR-A3LI-01 20 49366649 49366649 C T PARD6B Missense_Mutation p.P248L 0.38 deleterious(0) probably_damaging(1) TCGA-IR-A3LI-01 20 60899537 60899537 C G LAMA5 Missense_Mutation p.G1868A 0.20 benign(0.04) TCGA-IR-A3LI-01 20 62328684 62328684 C T TNFRSF6B Missense_Mutation p.T143I 0.29 deleterious(0) benign(0.446) TCGA-IR-A3LI-01 20 62421190 62421190 G A ZBTB46 Silent p.F307F 0.51 TCGA-IR-A3LI-01 20 62588367 62588367 G C ZNF512B 3'UTR 0.30 TCGA-IR-A3LI-01 21 34926794 34926794 G C SON Missense_Mutation p.E1753Q 0.46 benign(0.403) TCGA-IR-A3LI-01 21 45678411 45678411 C G DNMT3L Missense_Mutation p.E171Q 0.08 tolerated(0.06) benign(0.386) TCGA-IR-A3LI-01 22 16287509 16287509 G C POTEH Missense_Mutation p.S126C 0.14 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-IR-A3LI-01 22 18138488 18138488 C G BCL2L13 Missense_Mutation p.S4C 0.39 deleterious(0.02) possibly_damaging(0.907) TCGA-IR-A3LI-01 22 18841226 18841226 C T AC008132.13 3'Flank 0.12 TCGA-IR-A3LI-01 22 20127384 20127384 G A ZDHHC8 Missense_Mutation p.E176K 0.44 tolerated(0.07) probably_damaging(0.996) TCGA-IR-A3LI-01 22 20302222 20302222 C T DGCR6L Silent p.Q213Q 0.33 TCGA-IR-A3LI-01 22 21141329 21141329 G A SERPIND1 Missense_Mutation p.R492K 0.62 tolerated(0.06) possibly_damaging(0.803) TCGA-IR-A3LI-01 22 21354544 21354544 C T THAP7 Silent p.Q185Q 0.46 TCGA-IR-A3LI-01 22 25023584 25023584 C G GGT1 Silent p.L402L 0.50 TCGA-IR-A3LI-01 22 26997896 26997896 G A CRYBB1 Silent p.L174L 0.09 TCGA-IR-A3LI-01 22 28389396 28389396 G A TTC28 Silent p.L1785L 0.37 TCGA-IR-A3LI-01 22 29446272 29446272 G A ZNRF3 Nonsense_Mutation p.W701* 0.27 TCGA-IR-A3LI-01 22 30421894 30421894 G A MTMR3 3'UTR 0.50 TCGA-IR-A3LI-01 22 30793105 30793105 G T SEC14L2 5'UTR 0.46 TCGA-IR-A3LI-01 22 31674413 31674413 G A LIMK2 3'Flank 0.50 TCGA-IR-A3LI-01 22 36907574 36907574 C G EIF3D Missense_Mutation p.E537Q 0.21 tolerated(0.55) unknown(0) TCGA-IR-A3LI-01 22 37333842 37333842 G A CSF2RB Silent p.G664G 0.60 TCGA-IR-A3LI-01 22 39144780 39144780 G A SUN2 Missense_Mutation p.S229L 0.28 tolerated(0.41) benign(0.349) TCGA-IR-A3LI-01 22 39175601 39175601 G C DNAL4 Missense_Mutation p.I57M 0.30 deleterious(0) probably_damaging(0.955) TCGA-IR-A3LI-01 22 42605914 42605914 G A TCF20 Missense_Mutation p.R1800W 0.28 probably_damaging(0.982) TCGA-IR-A3LI-01 22 43036309 43036309 G A ATP5L2 5'UTR 0.14 TCGA-IR-A3LI-01 2 103322309 103322309 C T SLC9A2 Missense_Mutation p.S661F 0.33 deleterious(0.04) benign(0.004) TCGA-IR-A3LI-01 2 105859310 105859310 G A GPR45 Missense_Mutation p.R332H 0.37 tolerated(0.11) probably_damaging(0.909) TCGA-IR-A3LI-01 2 113789337 113789337 G C IL36B 5'UTR 0.14 TCGA-IR-A3LI-01 2 122095530 122095530 C A CLASP1 3'UTR 0.50 TCGA-IR-A3LI-01 2 128046937 128046937 C T ERCC3 Silent p.Q266Q 0.36 TCGA-IR-A3LI-01 2 131103843 131103843 G A IMP4 Silent p.L253L 0.36 TCGA-IR-A3LI-01 2 143799741 143799741 G A KYNU Silent p.%3D 0.41 TCGA-IR-A3LI-01 2 15307270 15307270 C A NBAS Nonsense_Mutation p.E2340* 0.11 TCGA-IR-A3LI-01 2 158406726 158406726 C T ACVR1C Silent p.T241T 0.40 TCGA-IR-A3LI-01 2 165956849 165956849 C G SCN3A Missense_Mutation p.R1310T 0.56 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LI-01 2 171717525 171717525 G A GAD1 3'UTR 0.11 TCGA-IR-A3LI-01 2 173882163 173882163 C G RAPGEF4 Missense_Mutation p.L647V 0.54 tolerated(0.35) benign(0.139) TCGA-IR-A3LI-01 2 179486627 179486627 C A TTN Nonsense_Mutation p.E15008* 0.46 TCGA-IR-A3LI-01 2 179501396 179501396 C T TTN Silent p.V13686V 0.42 TCGA-IR-A3LI-01 2 179659263 179659263 C T TTN Missense_Mutation p.D421N 0.38 TCGA-IR-A3LI-01 2 191922751 191922751 C T STAT4 Missense_Mutation p.R400Q 0.29 deleterious(0) possibly_damaging(0.518) TCGA-IR-A3LI-01 2 201437743 201437743 G T SGOL2 Missense_Mutation p.D892Y 0.55 tolerated(0.08) probably_damaging(0.946) TCGA-IR-A3LI-01 2 208988953 208988953 G C CRYGD Silent p.L45L 0.12 TCGA-IR-A3LI-01 2 209224921 209224921 G A PIKFYVE 3'Flank 0.46 TCGA-IR-A3LI-01 2 210804363 210804363 C T UNC80 Silent p.F2145F 0.16 TCGA-IR-A3LI-01 2 213871239 213871239 G A IKZF2 3'UTR 0.15 TCGA-IR-A3LI-01 2 216930051 216930051 G A PECR Silent p.F136F 0.23 TCGA-IR-A3LI-01 2 219494239 219494239 C A PLCD4 Intron 0.09 TCGA-IR-A3LI-01 2 219526522 219526522 G A BCS1L Silent p.V167V 0.41 TCGA-IR-A3LI-01 2 219526572 219526572 G A BCS1L Missense_Mutation p.R184H 0.50 deleterious(0.01) probably_damaging(0.932) TCGA-IR-A3LI-01 2 219563736 219563736 C T STK36 Silent p.L1157L 0.12 TCGA-IR-A3LI-01 2 228552884 228552884 G A SLC19A3 Nonsense_Mutation p.Q438* 0.28 TCGA-IR-A3LI-01 2 239005466 239005466 G A SCLY Missense_Mutation p.R386Q 0.50 tolerated(0.19) benign(0.004) TCGA-IR-A3LI-01 2 25095469 25095469 C T ADCY3 Silent p.K265K 0.37 TCGA-IR-A3LI-01 2 44586667 44586667 C T PREPL Missense_Mutation p.R63K 0.33 tolerated_low_confidence(1) benign(0.051) TCGA-IR-A3LI-01 2 50573974 50573974 C T NRXN1 Intron 0.46 TCGA-IR-A3LI-01 2 55844379 55844379 C T SMEK2 Missense_Mutation p.E15K 0.44 deleterious(0.03) benign(0.018) TCGA-IR-A3LI-01 2 6112096 6112096 C G DKFZP761K2322 Missense_Mutation p.L14V 0.27 possibly_damaging(0.578) TCGA-IR-A3LI-01 2 7003658 7003658 A G CMPK2 Missense_Mutation p.C243R 0.41 tolerated(0.23) probably_damaging(0.987) TCGA-IR-A3LI-01 2 73676904 73676904 G A ALMS1 Missense_Mutation p.D1083N 0.81 benign(0.17) TCGA-IR-A3LI-01 2 97475253 97475253 G A CNNM4 Silent p.%3D 0.28 TCGA-IR-A3LI-01 3 108224626 108224626 C T MYH15 Missense_Mutation p.E67K 0.27 tolerated(0.44) probably_damaging(0.996) TCGA-IR-A3LI-01 3 108279645 108279645 C T KIAA1524 Missense_Mutation p.E560K 0.05 deleterious(0.02) possibly_damaging(0.79) TCGA-IR-A3LI-01 3 11599735 11599735 C T VGLL4 3'Flank 0.54 TCGA-IR-A3LI-01 3 123010071 123010071 G A ADCY5 Silent p.V1072V 0.33 TCGA-IR-A3LI-01 3 128902674 128902674 G A CNBP 5'UTR 0.46 TCGA-IR-A3LI-01 3 133327481 133327481 C A TOPBP1 Missense_Mutation p.L1441F 0.17 tolerated(1) benign(0) TCGA-IR-A3LI-01 3 133347213 133347213 C T TOPBP1 Missense_Mutation p.D933N 0.13 deleterious(0.01) benign(0.261) TCGA-IR-A3LI-01 3 134080426 134080426 C T AMOTL2 Silent p.E501E 0.18 TCGA-IR-A3LI-01 3 13612026 13612026 G A FBLN2 Silent p.T57T 0.50 TCGA-IR-A3LI-01 3 150264652 150264652 C T SERP1 5'UTR 0.22 TCGA-IR-A3LI-01 3 155861124 155861124 G A KCNAB1 Intron 0.16 TCGA-IR-A3LI-01 3 156870923 156870923 C T CCNL1 Missense_Mutation p.D171N 0.17 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LI-01 3 157920935 157920935 G A RSRC1 Missense_Mutation p.R132Q 0.21 tolerated_low_confidence(0.24) unknown(0) TCGA-IR-A3LI-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.45 deleterious(0.02) probably_damaging(0.959) TCGA-IR-A3LI-01 3 182897275 182897275 C T MCF2L2 Missense_Mutation p.E1080K 0.10 tolerated_low_confidence(0.16) benign(0) TCGA-IR-A3LI-01 3 183995182 183995182 G A ECE2 Missense_Mutation p.D254N 0.15 tolerated(0.19) benign(0.002) TCGA-IR-A3LI-01 3 184971826 184971826 G A EHHADH 5'UTR 0.14 TCGA-IR-A3LI-01 3 192517146 192517146 C G MB21D2 Missense_Mutation p.D169H 0.23 tolerated(0.15) possibly_damaging(0.579) TCGA-IR-A3LI-01 3 193855740 193855740 C T HES1 Silent p.L187L 0.64 TCGA-IR-A3LI-01 3 196050580 196050580 G A TM4SF19 3'UTR 0.06 TCGA-IR-A3LI-01 3 196541435 196541435 G A PAK2 Missense_Mutation p.R350K 0.22 tolerated(0.05) possibly_damaging(0.746) TCGA-IR-A3LI-01 3 196613394 196613394 C T SENP5 Missense_Mutation p.L448F 0.20 tolerated(0.08) benign(0.013) TCGA-IR-A3LI-01 3 196753546 196753546 C T MFI2 Missense_Mutation p.E97K 0.38 deleterious(0) possibly_damaging(0.902) TCGA-IR-A3LI-01 3 37360673 37360673 G A GOLGA4 Missense_Mutation p.M533I 0.58 benign(0.018) TCGA-IR-A3LI-01 3 38888598 38888598 C T SCN11A Missense_Mutation p.E1655K 0.13 tolerated(0.06) possibly_damaging(0.464) TCGA-IR-A3LI-01 3 4403725 4403725 C T SUMF1 3'UTR 0.29 TCGA-IR-A3LI-01 3 44764064 44764064 G A ZNF502 3'UTR 0.62 TCGA-IR-A3LI-01 3 44905835 44905835 G A TMEM42 Silent p.S113S 0.41 TCGA-IR-A3LI-01 3 49057611 49057611 G A DALRD3 5'Flank 0.56 TCGA-IR-A3LI-01 3 50095409 50095409 G A RBM6 Missense_Mutation p.E648K 0.32 tolerated(0.69) benign(0.031) TCGA-IR-A3LI-01 3 50138005 50138005 G C RBM5 Missense_Mutation p.L150F 0.42 tolerated(0.07) benign(0.005) TCGA-IR-A3LI-01 3 51992023 51992023 G C PCBP4 3'UTR 0.41 TCGA-IR-A3LI-01 3 56667929 56667929 G A FAM208A Missense_Mutation p.R964W 0.56 deleterious(0.01) benign(0.312) TCGA-IR-A3LI-01 3 64009002 64009002 G A PSMD6 Missense_Mutation p.R32C 0.50 deleterious(0.04) benign(0.258) TCGA-IR-A3LI-01 3 73450114 73450114 C T PDZRN3 Missense_Mutation p.D405N 0.51 tolerated(0.44) benign(0.001) TCGA-IR-A3LI-01 3 97593240 97593240 G A CRYBG3 Missense_Mutation p.E1068K 0.27 TCGA-IR-A3LI-01 4 103518705 103518705 G A NFKB1 Silent p.Q508Q 0.41 TCGA-IR-A3LI-01 4 1219224 1219224 C T CTBP1 Silent p.Q157Q 0.55 TCGA-IR-A3LI-01 4 122739202 122739202 G A CCNA2 Missense_Mutation p.S416L 0.30 deleterious(0.01) benign(0.103) TCGA-IR-A3LI-01 4 128564836 128564836 G C INTU Missense_Mutation p.E103Q 0.30 tolerated(0.19) benign(0.363) TCGA-IR-A3LI-01 4 153251903 153251903 C T FBXW7 Missense_Mutation p.G368E 0.10 tolerated(0.08) benign(0.263) TCGA-IR-A3LI-01 4 153832973 153832973 G C ARFIP1 3'UTR 0.14 TCGA-IR-A3LI-01 4 184626182 184626182 C T TRAPPC11 Missense_Mutation p.P1005L 0.55 deleterious(0.01) possibly_damaging(0.869) TCGA-IR-A3LI-01 4 186068285 186068285 C A SLC25A4 3'UTR 0.42 TCGA-IR-A3LI-01 4 1987870 1987870 C T NELFA Missense_Mutation p.R280Q 0.40 tolerated(0.15) probably_damaging(0.997) TCGA-IR-A3LI-01 4 2343313 2343313 G A ZFYVE28 Silent p.I70I 0.12 TCGA-IR-A3LI-01 4 37962321 37962321 C G PTTG2 Missense_Mutation p.S89C 0.16 tolerated(0.08) benign(0.009) TCGA-IR-A3LI-01 4 48551606 48551606 C T FRYL Silent p.L1556L 0.54 TCGA-IR-A3LI-01 4 4864524 4864524 G A MSX1 Missense_Mutation p.R189H 0.29 deleterious(0) possibly_damaging(0.721) TCGA-IR-A3LI-01 4 493078 493078 G T PIGG 5'UTR 0.45 TCGA-IR-A3LI-01 4 728784 728784 G A PCGF3 Silent p.V58V 0.41 TCGA-IR-A3LI-01 4 76957212 76957212 G C CXCL11 5'UTR 0.10 TCGA-IR-A3LI-01 4 77231938 77231938 G T FAM47E-STBD1 3'UTR 0.52 TCGA-IR-A3LI-01 4 83987636 83987636 C T COPS4 Missense_Mutation p.S311F 0.44 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LI-01 4 84525961 84525961 G C AGPAT9 3'UTR 0.22 TCGA-IR-A3LI-01 5 112929060 112929060 G C YTHDC2 Missense_Mutation p.E1425Q 0.34 tolerated_low_confidence(0.59) benign(0.013) TCGA-IR-A3LI-01 5 114547685 114547685 C T PGGT1B 3'UTR 0.12 TCGA-IR-A3LI-01 5 115822519 115822519 G T SEMA6A Silent p.L296L 0.44 TCGA-IR-A3LI-01 5 13885200 13885200 G A DNAH5 Missense_Mutation p.H961Y 0.21 benign(0.002) TCGA-IR-A3LI-01 5 139508142 139508142 C T IGIP Silent p.L27L 0.08 TCGA-IR-A3LI-01 5 139889325 139889325 C A ANKHD1 Missense_Mutation p.S1290Y 0.45 possibly_damaging(0.608) TCGA-IR-A3LI-01 5 147845452 147845452 G A HTR4 Silent p.F371F 0.38 TCGA-IR-A3LI-01 5 148682038 148682038 G T AFAP1L1 Nonsense_Mutation p.E129* 0.41 TCGA-IR-A3LI-01 5 169310802 169310802 G A FAM196B Missense_Mutation p.S34F 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-IR-A3LI-01 5 1877709 1877709 G T IRX4 3'UTR 0.46 TCGA-IR-A3LI-01 5 34831008 34831008 C T RAI14 3'Flank 0.46 TCGA-IR-A3LI-01 5 41313019 41313019 C T PLCXD3 3'UTR 0.38 TCGA-IR-A3LI-01 5 52223484 52223484 G A ITGA1 Missense_Mutation p.R895K 0.53 tolerated(0.89) benign(0.001) TCGA-IR-A3LI-01 5 54585104 54585104 C A DHX29 Nonsense_Mutation p.E354* 0.38 TCGA-IR-A3LI-01 5 71756459 71756459 G C ZNF366 Missense_Mutation p.L289V 0.37 tolerated(0.05) possibly_damaging(0.677) TCGA-IR-A3LI-01 5 7698477 7698477 G A ADCY2 Missense_Mutation p.E367K 0.47 deleterious(0.01) benign(0.368) TCGA-IR-A3LI-01 5 79034399 79034399 G A CMYA5 Missense_Mutation p.D3271N 0.33 benign(0.194) TCGA-IR-A3LI-01 5 90106730 90106730 G A GPR98 Missense_Mutation p.G5218E 0.19 probably_damaging(0.972) TCGA-IR-A3LI-01 5 96112236 96112236 G C ERAP1 Missense_Mutation p.S897C 0.44 deleterious(0) possibly_damaging(0.808) TCGA-IR-A3LI-01 6 108365368 108365368 G C OSTM1 3'UTR 0.42 TCGA-IR-A3LI-01 6 110500922 110500922 C T WASF1 5'UTR 0.70 TCGA-IR-A3LI-01 6 129612791 129612791 G A LAMA2 Missense_Mutation p.E928K 0.51 tolerated(0.47) possibly_damaging(0.555) TCGA-IR-A3LI-01 6 133044801 133044801 C G VNN3 Intron 0.28 TCGA-IR-A3LI-01 6 134350293 134350293 G T SLC2A12 Missense_Mutation p.L224M 0.40 deleterious(0) probably_damaging(1) TCGA-IR-A3LI-01 6 139487903 139487903 G C HECA Missense_Mutation p.E252Q 0.50 tolerated(0.1) probably_damaging(0.994) TCGA-IR-A3LI-01 6 143091947 143091947 G C HIVEP2 Missense_Mutation p.S1310C 0.50 tolerated(0.07) possibly_damaging(0.503) TCGA-IR-A3LI-01 6 144508280 144508280 C T STX11 Silent p.V172V 0.53 TCGA-IR-A3LI-01 6 151089860 151089860 C T PLEKHG1 Silent p.I166I 0.31 TCGA-IR-A3LI-01 6 157803287 157803287 C G ZDHHC14 Missense_Mutation p.F78L 0.22 deleterious(0.05) benign(0.391) TCGA-IR-A3LI-01 6 160328744 160328744 G A MAS1 Missense_Mutation p.E253K 0.30 tolerated(0.59) benign(0.026) TCGA-IR-A3LI-01 6 26463496 26463496 C T BTN2A1 Missense_Mutation p.S152L 0.60 deleterious(0.01) benign(0.004) TCGA-IR-A3LI-01 6 27107193 27107193 C T HIST1H4I Missense_Mutation p.R36W 0.47 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LI-01 6 27834759 27834759 C T HIST1H1B Silent p.P183P 0.51 TCGA-IR-A3LI-01 6 28366095 28366095 G T ZSCAN12 Missense_Mutation p.Q30K 0.39 tolerated(0.07) benign(0) TCGA-IR-A3LI-01 6 28403360 28403360 C T ZSCAN23 Missense_Mutation p.E145K 0.39 tolerated(0.19) benign(0.003) TCGA-IR-A3LI-01 6 28871859 28871859 C T TRIM27 Silent p.E510E 0.30 TCGA-IR-A3LI-01 6 30029120 30029120 C T ZNRD1 5'UTR 0.45 TCGA-IR-A3LI-01 6 30572132 30572132 C T PPP1R10 Missense_Mutation p.R420Q 0.13 deleterious(0.01) benign(0.168) TCGA-IR-A3LI-01 6 31974456 31974456 C T AL645922.1 Intron 0.09 TCGA-IR-A3LI-01 6 32160012 32160012 C T GPSM3 Missense_Mutation p.E20K 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-IR-A3LI-01 6 34843713 34843713 C T UHRF1BP1 3'UTR 0.31 TCGA-IR-A3LI-01 6 36949434 36949434 C T MTCH1 Silent p.P112P 0.32 TCGA-IR-A3LI-01 6 4069315 4069315 G A FAM217A Missense_Mutation p.S381F 0.39 deleterious(0) possibly_damaging(0.83) TCGA-IR-A3LI-01 6 46832798 46832798 C T GPR116 Missense_Mutation p.M657I 0.08 tolerated(0.6) benign(0.001) TCGA-IR-A3LI-01 6 6649893 6649893 G A LY86 Missense_Mutation p.E130K 0.16 tolerated(0.61) benign(0.017) TCGA-IR-A3LI-01 6 74183257 74183257 G A MTO1 Silent p.L235L 0.47 TCGA-IR-A3LI-01 6 76596683 76596683 C G MYO6 Missense_Mutation p.S877C 0.46 tolerated(0.06) unknown(0) TCGA-IR-A3LI-01 6 83846971 83846971 C T DOPEY1 Silent p.L1070L 0.53 TCGA-IR-A3LI-01 6 87966072 87966072 G C ZNF292 Missense_Mutation p.E909Q 0.31 tolerated_low_confidence(0.57) benign(0.102) TCGA-IR-A3LI-01 6 87966431 87966431 G C ZNF292 Missense_Mutation p.L1028F 0.36 tolerated_low_confidence(0.1) possibly_damaging(0.495) TCGA-IR-A3LI-01 6 97702483 97702483 G A MMS22L Missense_Mutation p.H357Y 0.44 deleterious(0) probably_damaging(0.986) TCGA-IR-A3LI-01 7 102956536 102956536 C T DNAJC2 Splice_Site p.X476_splice 0.41 TCGA-IR-A3LI-01 7 104809665 104809665 G A SRPK2 Missense_Mutation p.H93Y 0.24 deleterious(0) probably_damaging(0.987) TCGA-IR-A3LI-01 7 107262206 107262206 C T BCAP29 3'UTR 0.32 TCGA-IR-A3LI-01 7 123256536 123256536 G A ASB15 Silent p.E93E 0.46 TCGA-IR-A3LI-01 7 143018499 143018499 C A CLCN1 Missense_Mutation p.L159M 0.17 tolerated(0.14) benign(0.411) TCGA-IR-A3LI-01 7 144060152 144060152 G C ARHGEF5 Missense_Mutation p.Q130H 0.18 deleterious(0.01) possibly_damaging(0.807) TCGA-IR-A3LI-01 7 1474750 1474750 C T MICALL2 Missense_Mutation p.M875I 0.31 deleterious(0.01) benign(0.092) TCGA-IR-A3LI-01 7 149461892 149461892 C T ZNF467 Missense_Mutation p.E567K 0.53 deleterious(0.02) benign(0.148) TCGA-IR-A3LI-01 7 151962198 151962198 C T KMT2C Missense_Mutation p.C370Y 0.06 probably_damaging(0.999) TCGA-IR-A3LI-01 7 2608599 2608599 G A IQCE Silent p.R32R 0.44 TCGA-IR-A3LI-01 7 30406530 30406530 C T ZNRF2 3'UTR 0.17 TCGA-IR-A3LI-01 7 37311454 37311454 G A ELMO1 Nonsense_Mutation p.R76* 0.42 TCGA-IR-A3LI-01 7 44561742 44561742 C T NPC1L1 Missense_Mutation p.E913K 0.29 tolerated(0.9) benign(0.001) TCGA-IR-A3LI-01 7 63538904 63538904 C T ZNF727 Nonsense_Mutation p.Q493* 0.48 TCGA-IR-A3LI-01 7 72922761 72922761 G A BAZ1B Silent p.L89L 0.39 TCGA-IR-A3LI-01 7 73973243 73973243 G A GTF2IRD1 Silent p.K752K 0.30 TCGA-IR-A3LI-01 7 91936908 91936908 G A ANKIB1 Missense_Mutation p.D142N 0.32 deleterious(0.04) probably_damaging(0.967) TCGA-IR-A3LI-01 7 93519512 93519512 C T TFPI2 Missense_Mutation p.E70K 0.49 tolerated(0.75) benign(0.076) TCGA-IR-A3LI-01 7 99716938 99716938 G C TAF6 Intron 0.19 TCGA-IR-A3LI-01 7 99747121 99747121 G A LAMTOR4 Splice_Site p.X2_splice 0.43 TCGA-IR-A3LI-01 8 104413815 104413815 G A SLC25A32 Silent p.V247V 0.49 TCGA-IR-A3LI-01 8 114031408 114031408 C T CSMD3 Nonsense_Mutation p.W306* 0.46 TCGA-IR-A3LI-01 8 12594230 12594230 G T LONRF1 Missense_Mutation p.F477L 0.30 tolerated(0.64) benign(0.405) TCGA-IR-A3LI-01 8 131826399 131826399 C G ADCY8 Silent p.L943L 0.12 TCGA-IR-A3LI-01 8 134488145 134488145 C T ST3GAL1 Silent p.Q41Q 0.52 TCGA-IR-A3LI-01 8 144802739 144802739 C T MAPK15 Intron 0.38 TCGA-IR-A3LI-01 8 144803953 144803953 C A MAPK15 Missense_Mutation p.S454Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LI-01 8 145616340 145616340 G A ADCK5 Missense_Mutation p.E184K 0.16 tolerated(0.38) benign(0.006) TCGA-IR-A3LI-01 8 145747964 145747964 G C LRRC24 Silent p.L479L 0.46 TCGA-IR-A3LI-01 8 1774297 1774297 C T ARHGEF10 Intron 0.55 TCGA-IR-A3LI-01 8 20004823 20004823 G A SLC18A1 Silent p.V470V 0.33 TCGA-IR-A3LI-01 8 21957333 21957333 G A FAM160B2 Missense_Mutation p.E424K 0.54 deleterious(0.02) benign(0.392) TCGA-IR-A3LI-01 8 37729590 37729590 G C RAB11FIP1 Silent p.L910L 0.50 TCGA-IR-A3LI-01 8 3889497 3889497 G A CSMD1 Silent p.H180H 0.35 TCGA-IR-A3LI-01 8 52321474 52321474 C T PXDNL Missense_Mutation p.E904K 0.55 tolerated(0.11) benign(0.395) TCGA-IR-A3LI-01 8 55060161 55060161 C G MRPL15 Missense_Mutation p.T258S 0.15 tolerated(0.72) benign(0.001) TCGA-IR-A3LI-01 8 55371672 55371673 - AGA SOX17 In_Frame_Ins p.E122dup 0.52 TCGA-IR-A3LI-01 8 56438507 56438507 C T XKR4 3'UTR 0.24 TCGA-IR-A3LI-01 8 57075541 57075541 G A PLAG1 3'UTR 0.47 TCGA-IR-A3LI-01 8 66989059 66989059 G A DNAJC5B Missense_Mutation p.G95E 0.36 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LI-01 8 68062107 68062107 C T CSPP1 Silent p.L684L 0.15 TCGA-IR-A3LI-01 8 94752736 94752736 G T RBM12B-AS1 Nonsense_Mutation p.E86* 0.39 TCGA-IR-A3LI-01 8 95892728 95892728 G A CCNE2 3'UTR 0.60 TCGA-IR-A3LI-01 8 98287127 98287127 G C TSPYL5 3'UTR 0.44 TCGA-IR-A3LI-01 9 100326399 100326399 G C TMOD1 Silent p.R189R 0.50 TCGA-IR-A3LI-01 9 104238925 104238925 C T TMEM246 Silent p.V150V 0.40 TCGA-IR-A3LI-01 9 107379792 107379792 C G OR13C9 Missense_Mutation p.E232Q 0.51 deleterious(0.01) possibly_damaging(0.513) TCGA-IR-A3LI-01 9 107583755 107583755 G A ABCA1 Missense_Mutation p.S954L 0.62 deleterious(0) possibly_damaging(0.871) TCGA-IR-A3LI-01 9 109691272 109691272 G A ZNF462 Silent p.K1693K 0.52 TCGA-IR-A3LI-01 9 114676973 114676973 G T UGCG Missense_Mutation p.D63Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LI-01 9 117119145 117119145 G A AKNA Silent p.I948I 0.43 TCGA-IR-A3LI-01 9 136219443 136219443 G A SURF1 Silent p.L203L 0.09 TCGA-IR-A3LI-01 9 140034113 140034113 C T GRIN1 Nonsense_Mutation p.Q59* 0.33 TCGA-IR-A3LI-01 9 140330468 140330468 G A ENTPD8 Silent p.F349F 0.47 TCGA-IR-A3LI-01 9 140331096 140331096 G T ENTPD8 Silent p.I221I 0.35 TCGA-IR-A3LI-01 9 21216676 21216676 C T IFNA16 3'UTR 0.39 TCGA-IR-A3LI-01 9 32631089 32631089 C T TAF1L Missense_Mutation p.D1497N 0.45 tolerated(0.42) benign(0.009) TCGA-IR-A3LI-01 9 32631755 32631755 C G TAF1L Missense_Mutation p.E1275Q 0.39 tolerated(0.28) probably_damaging(0.933) TCGA-IR-A3LI-01 9 32634881 32634881 C T TAF1L Missense_Mutation p.G233R 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-IR-A3LI-01 9 33676899 33676899 G A PTENP1 RNA 0.44 TCGA-IR-A3LI-01 9 7175287 7175287 G C KDM4C 3'UTR 0.50 TCGA-IR-A3LI-01 9 98643489 98643489 G A ERCC6L2 Missense_Mutation p.E140K 0.48 deleterious(0.03) benign(0.069) TCGA-IR-A3LI-01 X 103045992 103045992 C G PLP1 3'UTR 0.20 TCGA-IR-A3LI-01 X 114142688 114142688 C T HTR2C 3'UTR 0.39 TCGA-IR-A3LI-01 X 117959558 117959558 G A ZCCHC12 Missense_Mutation p.M117I 0.50 deleterious(0.03) possibly_damaging(0.455) TCGA-IR-A3LI-01 X 118763247 118763247 A T SEPT6 Intron 0.32 TCGA-IR-A3LI-01 X 123615768 123615768 C T TENM1 Missense_Mutation p.E1255K 0.52 deleterious(0.03) benign(0.191) TCGA-IR-A3LI-01 X 129299783 129299783 G A AIFM1 5'UTR 0.32 TCGA-IR-A3LI-01 X 138864854 138864854 C T ATP11C Missense_Mutation p.E605K 0.08 tolerated(1) benign(0.098) TCGA-IR-A3LI-01 X 149100746 149100746 C G CXorf40B 3'UTR 0.56 TCGA-IR-A3LI-01 X 14938473 14938473 C T MOSPD2 3'UTR 0.29 TCGA-IR-A3LI-01 X 151093052 151093052 C T MAGEA4 Missense_Mutation p.R306C 0.84 deleterious(0.03) possibly_damaging(0.498) TCGA-IR-A3LI-01 X 154020470 154020470 C A MPP1 Nonsense_Mutation p.E65* 0.75 TCGA-IR-A3LI-01 X 1561172 1561172 C G ASMTL Missense_Mutation p.E44D 0.11 deleterious(0) probably_damaging(0.925) TCGA-IR-A3LI-01 X 15818015 15818015 G A ZRSR2 Missense_Mutation p.E48K 0.31 tolerated(0.13) unknown(0) TCGA-IR-A3LI-01 X 24197540 24197540 C T ZFX Missense_Mutation p.S100L 0.31 tolerated(0.26) benign(0.02) TCGA-IR-A3LI-01 X 30746987 30746987 G A GK 3'UTR 0.45 TCGA-IR-A3LI-01 X 38180282 38180282 G A RPGR Missense_Mutation p.T103I 0.16 probably_damaging(0.999) TCGA-IR-A3LI-01 X 41524688 41524688 G A CASK Missense_Mutation p.H184Y 0.39 tolerated(0.15) benign(0.12) TCGA-IR-A3LI-01 X 53272579 53272579 G A IQSEC2 Missense_Mutation p.R942W 0.51 deleterious(0) possibly_damaging(0.84) TCGA-IR-A3LI-01 X 53579732 53579732 C T HUWE1 Missense_Mutation p.D2873N 0.47 possibly_damaging(0.539) TCGA-IR-A3LI-01 X 63005020 63005020 C T MIR1468 3'Flank 0.39 TCGA-IR-A3LI-01 X 64139817 64139817 G A ZC4H2 Intron 0.33 TCGA-IR-A3LI-01 X 65486316 65486316 G A HEPH Silent p.V1147V 0.38 TCGA-IR-A3LI-01 X 66931381 66931381 C T AR Silent p.L675L 0.08 TCGA-IR-A3LI-01 X 69397371 69397371 C T DGAT2L6 5'UTR 0.40 TCGA-IR-A3LI-01 X 70341568 70341568 C T MED12 Nonsense_Mutation p.Q335* 0.25 TCGA-IR-A3LI-01 X 73956445 73956445 G A KIAA2022 3'UTR 0.40 TCGA-IR-A3LK-01 10 101611362 101611362 G A ABCC2 Missense_Mutation p.E1538K 0.48 tolerated_low_confidence(0.59) benign(0.08) TCGA-IR-A3LK-01 10 102242219 102242219 C G WNT8B Missense_Mutation p.I234M 0.24 tolerated(0.27) benign(0.233) TCGA-IR-A3LK-01 10 102778905 102778905 G A PDZD7 Missense_Mutation p.S333F 0.80 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 10 103190136 103190136 C G BTRC Missense_Mutation p.S28C 0.38 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-IR-A3LK-01 10 104019846 104019846 C G GBF1 Missense_Mutation p.L46V 0.36 deleterious(0.01) possibly_damaging(0.685) TCGA-IR-A3LK-01 10 104122367 104122367 G C GBF1 Missense_Mutation p.E607Q 0.38 tolerated(0.28) benign(0.424) TCGA-IR-A3LK-01 10 104170845 104170845 G A PSD Silent p.L657L 0.38 TCGA-IR-A3LK-01 10 104182636 104182636 G A FBXL15 Silent p.L263L 0.36 TCGA-IR-A3LK-01 10 104244060 104244060 C T ACTR1A Missense_Mutation p.E172K 0.44 deleterious(0.01) benign(0.367) TCGA-IR-A3LK-01 10 104597060 104597060 C T CYP17A1 Missense_Mutation p.R20K 0.52 tolerated(0.94) benign(0.014) TCGA-IR-A3LK-01 10 105344981 105344981 C T NEURL1 Silent p.L446L 0.52 TCGA-IR-A3LK-01 10 105727567 105727567 G A SLK Missense_Mutation p.E22K 0.40 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LK-01 10 105885337 105885337 G A SFR1 Missense_Mutation p.E205K 0.56 deleterious(0.03) probably_damaging(0.957) TCGA-IR-A3LK-01 10 108333748 108333748 A C SORCS1 3'Flank 0.19 TCGA-IR-A3LK-01 10 111884032 111884032 G A ADD3 Silent p.T467T 0.47 TCGA-IR-A3LK-01 10 112343202 112343202 G C SMC3 Missense_Mutation p.E289Q 0.30 tolerated(0.06) benign(0.026) TCGA-IR-A3LK-01 10 112839373 112839373 C G ADRA2A 3'UTR 0.36 TCGA-IR-A3LK-01 10 114910865 114910865 C T TCF7L2 Silent p.V328V 0.46 TCGA-IR-A3LK-01 10 115485290 115485290 C T CASP7 Silent p.F215F 0.51 TCGA-IR-A3LK-01 10 116050048 116050048 G C VWA2 3'Flank 0.42 TCGA-IR-A3LK-01 10 117824046 117824046 C - GFRA1 Frame_Shift_Del p.E421Kfs*11 0.31 TCGA-IR-A3LK-01 10 12077300 12077300 G C UPF2 Missense_Mutation p.I41M 0.36 tolerated_low_confidence(0.16) unknown(0) TCGA-IR-A3LK-01 10 121342023 121342023 C G TIAL1 Missense_Mutation p.R76T 0.46 tolerated(0.25) benign(0.045) TCGA-IR-A3LK-01 10 124551942 124551942 G A DMBT1P1 RNA 0.39 TCGA-IR-A3LK-01 10 125539727 125539727 C T CPXM2 Missense_Mutation p.D312N 0.44 deleterious(0.01) probably_damaging(0.94) TCGA-IR-A3LK-01 10 128780198 128780198 C T DOCK1 Missense_Mutation p.S63L 0.42 deleterious(0) benign(0.369) TCGA-IR-A3LK-01 10 135010587 135010587 G A KNDC1 Missense_Mutation p.R587Q 0.40 tolerated(0.47) possibly_damaging(0.733) TCGA-IR-A3LK-01 10 135272652 135272652 C G SPRN Intron 0.33 TCGA-IR-A3LK-01 10 14709640 14709640 C T FAM107B Missense_Mutation p.M154I 0.36 tolerated_low_confidence(0.25) benign(0.01) TCGA-IR-A3LK-01 10 17271880 17271880 G C VIM Missense_Mutation p.E153D 0.39 deleterious(0.01) probably_damaging(0.981) TCGA-IR-A3LK-01 10 17738856 17738856 G A STAM Missense_Mutation p.E271K 0.41 deleterious(0) benign(0.196) TCGA-IR-A3LK-01 10 23483179 23483179 G A PTF1A 3'UTR 0.53 TCGA-IR-A3LK-01 10 267251 267251 C G ZMYND11 Missense_Mutation p.F131L 0.33 tolerated(0.86) benign(0) TCGA-IR-A3LK-01 10 27551908 27551908 G C ARMC4P1 RNA 0.25 TCGA-IR-A3LK-01 10 32096154 32096154 C G ARHGAP12 3'UTR 0.38 TCGA-IR-A3LK-01 10 32326243 32326243 G C KIF5B Missense_Mutation p.T217R 0.30 tolerated(0.11) benign(0.413) TCGA-IR-A3LK-01 10 33468343 33468343 C T NRP1 3'UTR 0.35 TCGA-IR-A3LK-01 10 35328007 35328007 G A CUL2 Silent p.L259L 0.29 TCGA-IR-A3LK-01 10 35456683 35456683 C T CREM Intron 0.49 TCGA-IR-A3LK-01 10 38120890 38120890 C G ZNF248 Missense_Mutation p.E465Q 0.41 tolerated(0.07) probably_damaging(0.931) TCGA-IR-A3LK-01 10 38344896 38344896 G C ZNF33A Missense_Mutation p.G615A 0.40 deleterious(0.03) possibly_damaging(0.89) TCGA-IR-A3LK-01 10 43881881 43881881 G T HNRNPF 3'UTR 0.41 TCGA-IR-A3LK-01 10 44139801 44139801 C G ZNF32 Missense_Mutation p.Q173H 0.47 tolerated(0.06) benign(0.005) TCGA-IR-A3LK-01 10 46113667 46113667 G A ZFAND4 Missense_Mutation p.L657F 0.38 tolerated(0.22) benign(0.209) TCGA-IR-A3LK-01 10 46222947 46222947 G A FAM21C Missense_Mutation p.R29H 0.33 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 10 51889698 51889698 G T FAM21A Nonsense_Mutation p.E1203* 0.40 TCGA-IR-A3LK-01 10 5541422 5541422 G C CALML5 5'UTR 0.23 TCGA-IR-A3LK-01 10 5904575 5904575 C G ANKRD16 3'UTR 0.45 TCGA-IR-A3LK-01 10 61006208 61006208 G C FAM13C 3'UTR 0.46 TCGA-IR-A3LK-01 10 61043192 61043192 C G FAM13C Missense_Mutation p.V175L 0.38 tolerated(0.54) benign(0.03) TCGA-IR-A3LK-01 10 61830231 61830231 C G ANK3 Missense_Mutation p.E3470Q 0.30 benign(0.087) TCGA-IR-A3LK-01 10 61835402 61835402 G A ANK3 Missense_Mutation p.S1746F 0.35 benign(0.085) TCGA-IR-A3LK-01 10 61846553 61846553 C T ANK3 Silent p.R1210R 0.40 TCGA-IR-A3LK-01 10 63450372 63450372 G C C10orf107 Missense_Mutation p.G94A 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-IR-A3LK-01 10 70048324 70048324 C T PBLD Missense_Mutation p.E203K 0.38 tolerated(0.26) benign(0.005) TCGA-IR-A3LK-01 10 70775519 70775519 G C KIAA1279 Missense_Mutation p.E405Q 0.35 tolerated(0.38) benign(0.354) TCGA-IR-A3LK-01 10 70775758 70775758 G C KIAA1279 Missense_Mutation p.M484I 0.39 tolerated(0.07) possibly_damaging(0.896) TCGA-IR-A3LK-01 10 70776150 70776150 G A KIAA1279 Missense_Mutation p.R615K 0.29 tolerated(0.43) benign(0.092) TCGA-IR-A3LK-01 10 72326613 72326613 G A PALD1 3'UTR 0.42 TCGA-IR-A3LK-01 10 72327271 72327271 G A PALD1 3'UTR 0.42 TCGA-IR-A3LK-01 10 72517796 72517796 G C ADAMTS14 Missense_Mutation p.E1009Q 0.31 tolerated(0.27) probably_damaging(0.924) TCGA-IR-A3LK-01 10 73455216 73455218 GTG - CDH23 In_Frame_Del p.W370del 0.49 TCGA-IR-A3LK-01 10 73767071 73767071 C G CHST3 Silent p.L94L 0.41 TCGA-IR-A3LK-01 10 74034832 74034832 C T DDIT4 Silent p.S195S 0.38 TCGA-IR-A3LK-01 10 74673095 74673095 G C OIT3 Missense_Mutation p.E274Q 0.47 tolerated(0.21) probably_damaging(0.944) TCGA-IR-A3LK-01 10 74714349 74714349 G C PLA2G12B Nonsense_Mutation p.S32* 0.40 TCGA-IR-A3LK-01 10 74886474 74886474 G C NUDT13 Missense_Mutation p.E249D 0.06 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 10 75113384 75113384 G A TTC18 Silent p.F60F 0.46 TCGA-IR-A3LK-01 10 75677254 75677254 G C PLAU 3'UTR 0.39 TCGA-IR-A3LK-01 10 7769676 7769676 C G ITIH2 Missense_Mutation p.I388M 0.43 deleterious(0.04) probably_damaging(0.993) TCGA-IR-A3LK-01 10 7860774 7860774 C G TAF3 Silent p.L34L 0.33 TCGA-IR-A3LK-01 10 8006327 8006327 C G TAF3 Nonsense_Mutation p.S285* 0.36 TCGA-IR-A3LK-01 10 81273337 81273337 C G EIF5AL1 3'UTR 0.36 TCGA-IR-A3LK-01 10 81915304 81915304 G A ANXA11 3'UTR 0.38 TCGA-IR-A3LK-01 10 88728242 88728242 C G ADIRF 5'UTR 0.26 TCGA-IR-A3LK-01 10 88930713 88930713 C G FAM35A Missense_Mutation p.Q649E 0.36 tolerated(0.06) benign(0.221) TCGA-IR-A3LK-01 10 90771815 90771815 C T FAS Missense_Mutation p.H210Y 0.24 tolerated(1) benign(0.001) TCGA-IR-A3LK-01 10 91503597 91503597 G A KIF20B Silent p.L1276L 0.28 TCGA-IR-A3LK-01 10 91528105 91528105 C G KIF20B Missense_Mutation p.P1643R 0.53 deleterious(0.01) probably_damaging(0.948) TCGA-IR-A3LK-01 10 92992 92992 G C TUBB8 3'UTR 0.40 TCGA-IR-A3LK-01 10 93272338 93272338 G C HECTD2 3'UTR 0.79 TCGA-IR-A3LK-01 10 96100046 96100046 G C NOC3L Missense_Mutation p.F589L 0.31 tolerated(1) benign(0.009) TCGA-IR-A3LK-01 10 97131130 97131130 C G SORBS1 Missense_Mutation p.E620Q 0.42 tolerated_low_confidence(0.05) benign(0.224) TCGA-IR-A3LK-01 10 99081412 99081412 G A FRAT1 3'UTR 0.45 TCGA-IR-A3LK-01 10 99625350 99625350 G C GOLGA7B Missense_Mutation p.E133Q 0.48 deleterious(0.01) possibly_damaging(0.612) TCGA-IR-A3LK-01 10 99969375 99969375 G A R3HCC1L Missense_Mutation p.D502N 0.41 tolerated(0.15) benign(0.081) TCGA-IR-A3LK-01 11 102567510 102567510 G C MMP27 Missense_Mutation p.H226D 0.38 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 11 102667487 102667487 C G MMP1 Missense_Mutation p.G178A 0.53 deleterious(0.03) benign(0.019) TCGA-IR-A3LK-01 11 102819836 102819836 C T MMP13 Silent p.T323T 0.52 TCGA-IR-A3LK-01 11 104819268 104819268 G C CASP4 Nonsense_Mutation p.S306* 0.42 TCGA-IR-A3LK-01 11 105774694 105774694 G A GRIA4 Missense_Mutation p.R347K 0.50 tolerated(0.21) benign(0.159) TCGA-IR-A3LK-01 11 10819087 10819087 G C EIF4G2 3'UTR 0.79 TCGA-IR-A3LK-01 11 110135560 110135560 C T RDX Missense_Mutation p.G46R 0.35 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 11 111164435 111164435 C T COLCA1 3'UTR 0.64 TCGA-IR-A3LK-01 11 111164586 111164586 C A COLCA1 3'UTR 0.34 TCGA-IR-A3LK-01 11 111177315 111177315 C T COLCA2 Silent p.F21F 0.45 TCGA-IR-A3LK-01 11 111385666 111385666 C T C11orf88 Nonsense_Mutation p.Q53* 0.26 TCGA-IR-A3LK-01 11 111574019 111574019 G A SIK2 Missense_Mutation p.E274K 0.45 deleterious(0.03) benign(0.37) TCGA-IR-A3LK-01 11 111680494 111680494 C G ALG9 Missense_Mutation p.D365H 0.34 deleterious(0) possibly_damaging(0.869) TCGA-IR-A3LK-01 11 111889885 111889885 C G DIXDC1 3'UTR 0.38 TCGA-IR-A3LK-01 11 111915924 111915924 C T DLAT Silent p.F420F 0.47 TCGA-IR-A3LK-01 11 113669908 113669908 C T USP28 3'UTR 0.10 TCGA-IR-A3LK-01 11 113674600 113674600 C G USP28 Splice_Site p.X887_splice 0.43 TCGA-IR-A3LK-01 11 113860273 113860273 C T HTR3A Missense_Mutation p.R447W 0.51 deleterious(0) possibly_damaging(0.761) TCGA-IR-A3LK-01 11 117038362 117038362 A T PAFAH1B2 Missense_Mutation p.I213F 0.33 deleterious(0) possibly_damaging(0.736) TCGA-IR-A3LK-01 11 117038444 117038444 C T PAFAH1B2 3'UTR 0.39 TCGA-IR-A3LK-01 11 118006542 118006542 C G SCN4B 3'UTR 0.39 TCGA-IR-A3LK-01 11 118402891 118402891 G A TMEM25 Missense_Mutation p.D33N 0.31 tolerated(0.25) benign(0.405) TCGA-IR-A3LK-01 11 118461080 118461080 G C ARCN1 Missense_Mutation p.K281N 0.44 deleterious(0) probably_damaging(0.956) TCGA-IR-A3LK-01 11 118894079 118894079 G T TRAPPC4 Missense_Mutation p.E210D 0.51 tolerated(0.16) benign(0.01) TCGA-IR-A3LK-01 11 119057255 119057255 C T PDZD3 Silent p.F62F 0.46 TCGA-IR-A3LK-01 11 128329650 128329650 C G ETS1 3'UTR 0.38 TCGA-IR-A3LK-01 11 128851411 128851411 G T ARHGAP32 Missense_Mutation p.F546L 0.32 tolerated(0.11) benign(0.106) TCGA-IR-A3LK-01 11 129306798 129306798 G A BARX2 Missense_Mutation p.E114K 0.43 tolerated(0.49) benign(0.23) TCGA-IR-A3LK-01 11 130104128 130104128 C G ZBTB44 3'UTR 0.42 TCGA-IR-A3LK-01 11 130275551 130275551 C T ADAMTS8 Missense_Mutation p.E858K 0.36 tolerated(0.1) probably_damaging(0.92) TCGA-IR-A3LK-01 11 134249161 134249161 C G B3GAT1 3'Flank 0.56 TCGA-IR-A3LK-01 11 1642395 1642395 G A KRTAP5-4 3'UTR 0.50 TCGA-IR-A3LK-01 11 17496434 17496434 C T ABCC8 Missense_Mutation p.G97R 0.86 tolerated(0.26) benign(0.174) TCGA-IR-A3LK-01 11 1780778 1780778 G C CTSD Missense_Mutation p.S107C 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LK-01 11 1887970 1887970 C G LSP1 Nonsense_Mutation p.S89* 0.84 TCGA-IR-A3LK-01 11 27390317 27390317 C G LGR4 Missense_Mutation p.M651I 0.50 tolerated(0.45) benign(0.002) TCGA-IR-A3LK-01 11 281202 281202 G C NLRP6 Missense_Mutation p.E490Q 0.88 tolerated(0.05) benign(0.051) TCGA-IR-A3LK-01 11 3381540 3381540 C G ZNF195 Missense_Mutation p.R233T 0.76 tolerated(0.2) benign(0.179) TCGA-IR-A3LK-01 11 34156767 34156767 G A NAT10 Missense_Mutation p.E653K 0.38 deleterious(0.04) benign(0.034) TCGA-IR-A3LK-01 11 36293145 36293145 C A COMMD9 3'Flank 0.56 TCGA-IR-A3LK-01 11 36293351 36293351 C T COMMD9 3'Flank 0.58 TCGA-IR-A3LK-01 11 400063 400063 C T PKP3 Missense_Mutation p.S457L 0.71 deleterious(0.01) probably_damaging(0.997) TCGA-IR-A3LK-01 11 45927614 45927614 C A MAPK8IP1 3'UTR 0.71 TCGA-IR-A3LK-01 11 46329438 46329438 G C CREB3L1 Missense_Mutation p.E135Q 0.74 tolerated(0.24) benign(0.238) TCGA-IR-A3LK-01 11 46342826 46342826 G C CREB3L1 3'UTR 0.69 TCGA-IR-A3LK-01 11 47317492 47317492 G C MADD Missense_Mutation p.L1215F 0.52 deleterious(0.04) probably_damaging(0.999) TCGA-IR-A3LK-01 11 47333367 47333367 G C MADD Missense_Mutation p.E1415Q 0.73 tolerated(0.31) benign(0.272) TCGA-IR-A3LK-01 11 5172670 5172670 G C OR52A1 Missense_Mutation p.F310L 0.60 tolerated(0.1) benign(0.012) TCGA-IR-A3LK-01 11 55595169 55595169 C T OR5L2 Missense_Mutation p.H159Y 0.54 tolerated(0.07) probably_damaging(0.999) TCGA-IR-A3LK-01 11 55653304 55653304 G A TRIM51 Missense_Mutation p.E134K 0.33 deleterious(0.02) benign(0.216) TCGA-IR-A3LK-01 11 55681195 55681195 C G OR5W2 Silent p.L288L 0.56 TCGA-IR-A3LK-01 11 55861448 55861448 C G OR8I2 Nonsense_Mutation p.S222* 0.34 TCGA-IR-A3LK-01 11 56380779 56380779 G T OR5M1 Missense_Mutation p.S67Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 11 57256402 57256402 G A SLC43A1 Missense_Mutation p.L466F 0.45 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 11 57971060 57971060 G A OR1S2 Silent p.L198L 0.42 TCGA-IR-A3LK-01 11 58386317 58386317 C G ZFP91 3'UTR 0.29 TCGA-IR-A3LK-01 11 58386426 58386426 C G ZFP91 3'UTR 0.28 TCGA-IR-A3LK-01 11 58386482 58386482 C A ZFP91 3'UTR 0.17 TCGA-IR-A3LK-01 11 60183174 60183174 G A MS4A14 Missense_Mutation p.E278K 0.50 tolerated(0.11) possibly_damaging(0.854) TCGA-IR-A3LK-01 11 61096837 61096837 G A DDB1 Nonsense_Mutation p.Q183* 0.28 TCGA-IR-A3LK-01 11 61323615 61323615 G A SYT7 Silent p.V32V 0.38 TCGA-IR-A3LK-01 11 616921 616921 C G CDHR5 3'UTR 0.72 TCGA-IR-A3LK-01 11 61730086 61730086 C G BEST1 Nonsense_Mutation p.S427* 0.29 TCGA-IR-A3LK-01 11 62886398 62886398 G C SLC22A24 Silent p.L272L 0.35 TCGA-IR-A3LK-01 11 63176208 63176208 C G SLC22A9 Silent p.L486L 0.42 TCGA-IR-A3LK-01 11 6340548 6340548 G C PRKCDBP Missense_Mutation p.R211G 0.69 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LK-01 11 64556789 64556789 G T MAP4K2 3'UTR 0.41 TCGA-IR-A3LK-01 11 64698937 64698937 G A PPP2R5B Silent p.E307E 0.40 TCGA-IR-A3LK-01 11 64882211 64882211 G C TM7SF2 Missense_Mutation p.M210I 0.51 tolerated(0.14) benign(0.003) TCGA-IR-A3LK-01 11 65822642 65822642 C G SF3B2 Silent p.G118G 0.26 TCGA-IR-A3LK-01 11 66102954 66102954 G A RIN1 Silent p.L157L 0.41 TCGA-IR-A3LK-01 11 66192484 66192484 C T NPAS4 Missense_Mutation p.T708M 0.42 tolerated(0.18) benign(0.001) TCGA-IR-A3LK-01 11 66193860 66193860 G C NPAS4 3'UTR 0.57 TCGA-IR-A3LK-01 11 66359139 66359139 C G CCDC87 Missense_Mutation p.D450H 0.34 deleterious(0.01) possibly_damaging(0.843) TCGA-IR-A3LK-01 11 66384308 66384308 C T RBM14-RBM4 Silent p.F39F 0.33 TCGA-IR-A3LK-01 11 66393087 66393087 C T RBM14 Silent p.R580R 0.49 TCGA-IR-A3LK-01 11 67226214 67226214 G A CABP4 3'UTR 0.41 TCGA-IR-A3LK-01 11 67226215 67226215 G A CABP4 3'UTR 0.41 TCGA-IR-A3LK-01 11 67226221 67226221 G A CABP4 3'UTR 0.38 TCGA-IR-A3LK-01 11 67267839 67267839 C G PITPNM1 Missense_Mutation p.E232Q 0.32 deleterious(0) probably_damaging(0.981) TCGA-IR-A3LK-01 11 67289435 67289435 C T CABP2 Missense_Mutation p.E78K 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-IR-A3LK-01 11 67396431 67396431 C T NUDT8 Missense_Mutation p.E96K 0.48 tolerated(0.6) benign(0.003) TCGA-IR-A3LK-01 11 68369359 68369359 C T PPP6R3 Missense_Mutation p.P741S 0.30 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 11 6867247 6867247 G C OR10A5 Missense_Mutation p.E112Q 0.72 deleterious(0) probably_damaging(0.957) TCGA-IR-A3LK-01 11 69999169 69999169 C A ANO1 Missense_Mutation p.P454T 0.45 tolerated(0.11) probably_damaging(0.995) TCGA-IR-A3LK-01 11 70028677 70028677 G A ANO1 Missense_Mutation p.G825R 0.44 deleterious(0.03) probably_damaging(1) TCGA-IR-A3LK-01 11 70824342 70824342 C A SHANK2 Silent p.T160T 0.40 TCGA-IR-A3LK-01 11 71174494 71174494 A T NADSYN1 Missense_Mutation p.N94Y 0.23 deleterious(0.01) probably_damaging(0.917) TCGA-IR-A3LK-01 11 71850915 71850915 C G FOLR3 3'UTR 0.45 TCGA-IR-A3LK-01 11 71941061 71941061 G A INPPL1 Missense_Mutation p.E313K 0.41 deleterious(0.02) benign(0.288) TCGA-IR-A3LK-01 11 71941062 71941062 A T INPPL1 Missense_Mutation p.E313V 0.41 deleterious(0) probably_damaging(0.94) TCGA-IR-A3LK-01 11 73611423 73611423 G T PAAF1 Nonsense_Mutation p.E164* 0.55 TCGA-IR-A3LK-01 11 74046997 74046997 G C PGM2L1 3'UTR 0.42 TCGA-IR-A3LK-01 11 74656105 74656105 T G XRRA1 5'UTR 0.39 TCGA-IR-A3LK-01 11 74656113 74656113 C G XRRA1 5'UTR 0.36 TCGA-IR-A3LK-01 11 74873697 74873697 C T SLCO2B1 Intron 0.39 TCGA-IR-A3LK-01 11 85435827 85435827 G A SYTL2 Missense_Mutation p.P558L 0.38 tolerated(0.22) benign(0.003) TCGA-IR-A3LK-01 11 86662235 86662235 C G FZD4 Missense_Mutation p.K521N 0.35 tolerated(0.4) benign(0.067) TCGA-IR-A3LK-01 11 92615956 92615956 T A FAT3 Missense_Mutation p.S4112T 0.34 benign(0.002) TCGA-IR-A3LK-01 11 93529609 93529609 C G MED17 Nonsense_Mutation p.S349* 0.42 TCGA-IR-A3LK-01 11 94703170 94703170 C G CWC15 Missense_Mutation p.E142Q 0.34 tolerated(0.44) possibly_damaging(0.859) TCGA-IR-A3LK-01 11 95564411 95564411 G C CEP57 Missense_Mutation p.W498C 0.58 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 11 96117183 96117183 G C CCDC82 Silent p.L243L 0.37 TCGA-IR-A3LK-01 12 101779877 101779877 G A UTP20 Silent p.L2778L 0.23 TCGA-IR-A3LK-01 12 102158230 102158230 G A GNPTAB Missense_Mutation p.T822I 0.45 tolerated(0.29) benign(0.001) TCGA-IR-A3LK-01 12 102161817 102161817 G C GNPTAB Missense_Mutation p.S469C 0.39 tolerated(0.06) possibly_damaging(0.676) TCGA-IR-A3LK-01 12 102271529 102271529 C T DRAM1 5'UTR 0.36 TCGA-IR-A3LK-01 12 10332090 10332090 C G TMEM52B 5'UTR 0.54 TCGA-IR-A3LK-01 12 103354281 103354281 T A ASCL1 3'UTR 0.56 TCGA-IR-A3LK-01 12 104332172 104332172 G A HSP90B1 Missense_Mutation p.E304K 0.40 tolerated(0.69) benign(0.002) TCGA-IR-A3LK-01 12 105456723 105456723 C T ALDH1L2 Silent p.K288K 0.37 TCGA-IR-A3LK-01 12 106729840 106729840 G A TCP11L2 Missense_Mutation p.E331K 0.39 deleterious(0.03) benign(0.181) TCGA-IR-A3LK-01 12 107367143 107367143 G C C12orf23 3'UTR 0.38 TCGA-IR-A3LK-01 12 108051308 108051308 C G BTBD11 Nonsense_Mutation p.S1043* 0.46 TCGA-IR-A3LK-01 12 108150630 108150630 G C PRDM4 Missense_Mutation p.H42D 0.55 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-IR-A3LK-01 12 108643769 108643769 C G WSCD2 3'UTR 0.37 TCGA-IR-A3LK-01 12 108911001 108911001 C T FICD Silent p.I84I 0.23 TCGA-IR-A3LK-01 12 109328032 109328032 G C SVOP Missense_Mutation p.F264L 0.38 deleterious(0) probably_damaging(0.99) TCGA-IR-A3LK-01 12 109541279 109541279 C T UNG Nonsense_Mutation p.Q222* 0.31 TCGA-IR-A3LK-01 12 109614064 109614064 G C ACACB Missense_Mutation p.R478T 0.38 deleterious(0.02) probably_damaging(0.963) TCGA-IR-A3LK-01 12 110206094 110206094 G T FAM222A Silent p.G120G 0.27 TCGA-IR-A3LK-01 12 110628815 110628815 G A IFT81 Missense_Mutation p.E477K 0.33 deleterious(0.01) probably_damaging(0.938) TCGA-IR-A3LK-01 12 111078937 111078937 G C TCTN1 Missense_Mutation p.E363Q 0.36 tolerated(0.38) benign(0.119) TCGA-IR-A3LK-01 12 111785986 111785986 G A CUX2 Missense_Mutation p.D1440N 0.44 tolerated_low_confidence(0.07) benign(0.012) TCGA-IR-A3LK-01 12 112460219 112460219 G C ERP29 Missense_Mutation p.Q183H 0.44 deleterious(0.02) benign(0.292) TCGA-IR-A3LK-01 12 112578867 112578867 G A TRAFD1 Missense_Mutation p.G161E 0.61 tolerated(0.12) benign(0.128) TCGA-IR-A3LK-01 12 112589766 112589766 C G TRAFD1 Missense_Mutation p.P481A 0.46 tolerated(0.23) possibly_damaging(0.661) TCGA-IR-A3LK-01 12 118199001 118199001 G A KSR2 Silent p.I267I 0.41 TCGA-IR-A3LK-01 12 120751013 120751013 C G SIRT4 3'UTR 0.42 TCGA-IR-A3LK-01 12 121175684 121175684 G A ACADS Missense_Mutation p.E173K 0.33 tolerated(0.3) benign(0.282) TCGA-IR-A3LK-01 12 121947490 121947490 G C KDM2B Silent p.L509L 0.34 TCGA-IR-A3LK-01 12 122091038 122091038 C T MORN3 Silent p.T197T 0.40 TCGA-IR-A3LK-01 12 122340930 122340930 G A PSMD9 Missense_Mutation p.E158K 0.45 tolerated(0.19) benign(0.042) TCGA-IR-A3LK-01 12 122618098 122618098 C T MLXIP Silent p.F432F 0.35 TCGA-IR-A3LK-01 12 123052845 123052845 G A KNTC1 Missense_Mutation p.D548N 0.41 tolerated(0.31) benign(0.057) TCGA-IR-A3LK-01 12 124330576 124330576 G A DNAH10 Missense_Mutation p.E1779K 0.30 benign(0.006) TCGA-IR-A3LK-01 12 124363859 124363859 G A DNAH10 Silent p.L2689L 0.38 TCGA-IR-A3LK-01 12 124416304 124416304 C G DNAH10 Silent p.L4228L 0.41 TCGA-IR-A3LK-01 12 124416389 124416389 C G DNAH10 Missense_Mutation p.Q4257E 0.43 possibly_damaging(0.643) TCGA-IR-A3LK-01 12 125296452 125296452 C T SCARB1 Silent p.R230R 0.30 TCGA-IR-A3LK-01 12 132399633 132399633 C G ULK1 Missense_Mutation p.S460C 0.38 tolerated(0.08) possibly_damaging(0.503) TCGA-IR-A3LK-01 12 133281324 133281324 C T PXMP2 3'UTR 0.44 TCGA-IR-A3LK-01 12 133398849 133398849 C G GOLGA3 5'UTR 0.29 TCGA-IR-A3LK-01 12 13716489 13716489 G A GRIN2B Missense_Mutation p.T1228M 0.61 deleterious(0.04) benign(0.347) TCGA-IR-A3LK-01 12 16052915 16052915 G C STRAP Missense_Mutation p.E285Q 0.70 deleterious(0) probably_damaging(0.984) TCGA-IR-A3LK-01 12 22602662 22602662 C A C2CD5 3'UTR 0.66 TCGA-IR-A3LK-01 12 26816701 26816701 G C ITPR2 Missense_Mutation p.Q544E 0.59 deleterious(0.03) possibly_damaging(0.794) TCGA-IR-A3LK-01 12 2711064 2711064 G C CACNA1C Silent p.R986R 0.67 TCGA-IR-A3LK-01 12 39734039 39734039 A T KIF21A Silent p.L746L 0.31 TCGA-IR-A3LK-01 12 40758834 40758834 A G LRRK2 Missense_Mutation p.M2458V 0.38 deleterious(0.01) benign(0.028) TCGA-IR-A3LK-01 12 41853765 41853765 G C PDZRN4 Intron 0.56 TCGA-IR-A3LK-01 12 42503418 42503418 C T GXYLT1 Missense_Mutation p.E188K 0.29 tolerated(0.06) possibly_damaging(0.895) TCGA-IR-A3LK-01 12 46301283 46301283 G C ARID2 3'UTR 0.45 TCGA-IR-A3LK-01 12 46756857 46756857 G A SLC38A2 Missense_Mutation p.R376C 0.36 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LK-01 12 48369760 48369760 C T COL2A1 Missense_Mutation p.E1195K 0.30 unknown(0) TCGA-IR-A3LK-01 12 48534544 48534544 C T PFKM Missense_Mutation p.P482S 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-IR-A3LK-01 12 48919717 48919717 C T OR8S1 Silent p.V101V 0.41 TCGA-IR-A3LK-01 12 4920131 4920131 C T KCNA6 Silent p.F308F 0.70 TCGA-IR-A3LK-01 12 49431395 49431395 G C KMT2D Silent p.L3248L 0.34 TCGA-IR-A3LK-01 12 49495285 49495285 G A LMBR1L Silent p.I326I 0.60 TCGA-IR-A3LK-01 12 50047597 50047597 C T FMNL3 Missense_Mutation p.V378M 0.39 tolerated(0.11) probably_damaging(0.997) TCGA-IR-A3LK-01 12 50344910 50344910 C T AQP2 Silent p.A99A 0.42 TCGA-IR-A3LK-01 12 51685700 51685700 C G BIN2 Missense_Mutation p.G397A 0.39 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-IR-A3LK-01 12 52863516 52863516 G C KRT6C Silent p.V454V 0.46 TCGA-IR-A3LK-01 12 52908823 52908823 C T KRT5 Missense_Mutation p.R559Q 0.46 tolerated(0.51) unknown(0) TCGA-IR-A3LK-01 12 52908959 52908959 C T KRT5 Missense_Mutation p.G514R 0.44 tolerated(0.17) unknown(0) TCGA-IR-A3LK-01 12 52940257 52940257 C G KRT71 Missense_Mutation p.E380Q 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LK-01 12 53344642 53344642 C T KRT18 Silent p.I203I 0.35 TCGA-IR-A3LK-01 12 53410310 53410310 G T EIF4B Nonsense_Mutation p.E23* 0.47 TCGA-IR-A3LK-01 12 53454751 53454751 C T TENC1 Nonsense_Mutation p.R1031* 0.57 TCGA-IR-A3LK-01 12 53514592 53514592 C G SOAT2 Missense_Mutation p.I354M 0.43 tolerated(0.21) benign(0.309) TCGA-IR-A3LK-01 12 53518094 53518094 C T SOAT2 3'UTR 0.70 TCGA-IR-A3LK-01 12 53591319 53591319 G AA ITGB7 Frame_Shift_Ins p.L178Ffs*82 0.38 TCGA-IR-A3LK-01 12 53680114 53680114 C T ESPL1 Silent p.L1198L 0.36 TCGA-IR-A3LK-01 12 53703052 53703052 G C AAAS Nonsense_Mutation p.S275* 0.53 TCGA-IR-A3LK-01 12 53803156 53803156 G C SP1 Missense_Mutation p.D619H 0.39 deleterious(0.01) benign(0.007) TCGA-IR-A3LK-01 12 54367370 54367370 G A HOXC11 Missense_Mutation p.M115I 0.31 tolerated(0.29) possibly_damaging(0.625) TCGA-IR-A3LK-01 12 54449549 54449549 G A HOXC4 3'UTR 0.44 TCGA-IR-A3LK-01 12 55641088 55641088 C T OR6C74 Missense_Mutation p.T6I 0.38 tolerated_low_confidence(0.19) benign(0.107) TCGA-IR-A3LK-01 12 56092581 56092581 C T ITGA7 Missense_Mutation p.R308H 0.45 tolerated(0.14) probably_damaging(0.954) TCGA-IR-A3LK-01 12 56151248 56151248 G C SARNP 3'UTR 0.59 TCGA-IR-A3LK-01 12 56231076 56231076 C G MMP19 Missense_Mutation p.G424A 0.46 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LK-01 12 56332976 56332976 C G DGKA Missense_Mutation p.Q161E 0.48 tolerated(0.26) benign(0.023) TCGA-IR-A3LK-01 12 56397641 56397641 G C SUOX Missense_Mutation p.K156N 0.30 deleterious(0) probably_damaging(0.963) TCGA-IR-A3LK-01 12 56398056 56398056 G A SUOX Missense_Mutation p.G295R 0.42 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 12 56398437 56398437 G T SUOX Nonsense_Mutation p.E422* 0.39 TCGA-IR-A3LK-01 12 56503680 56503680 G C PA2G4 Missense_Mutation p.G197A 0.33 tolerated(0.09) possibly_damaging(0.562) TCGA-IR-A3LK-01 12 56504386 56504386 C T PA2G4 Missense_Mutation p.P251L 0.47 tolerated(0.3) benign(0.021) TCGA-IR-A3LK-01 12 56549364 56549364 C G MYL6B Missense_Mutation p.L170V 0.56 deleterious(0) probably_damaging(0.983) TCGA-IR-A3LK-01 12 56599843 56599843 C G RNF41 3'UTR 0.39 TCGA-IR-A3LK-01 12 56600222 56600222 C T RNF41 3'UTR 0.58 TCGA-IR-A3LK-01 12 56600311 56600311 C T RNF41 Missense_Mutation p.E292K 0.33 deleterious(0.01) possibly_damaging(0.655) TCGA-IR-A3LK-01 12 56817142 56817142 G C TIMELESS Silent p.L736L 0.32 TCGA-IR-A3LK-01 12 57057307 57057307 C T PTGES3 3'UTR 0.59 TCGA-IR-A3LK-01 12 57114446 57114446 G C NACA Missense_Mutation p.Q290E 0.28 deleterious_low_confidence(0) benign(0) TCGA-IR-A3LK-01 12 57127958 57127958 G A PRIM1 Nonsense_Mutation p.R406* 0.38 TCGA-IR-A3LK-01 12 57178733 57178733 G C HSD17B6 Missense_Mutation p.M223I 0.43 tolerated(0.29) benign(0) TCGA-IR-A3LK-01 12 57861878 57861878 G - GLI1 Frame_Shift_Del p.T394Pfs*36 0.23 TCGA-IR-A3LK-01 12 57882491 57882491 C G MARS Intron 0.33 TCGA-IR-A3LK-01 12 57923714 57923714 C T MBD6 3'UTR 0.27 TCGA-IR-A3LK-01 12 64505618 64505618 G A SRGAP1 Missense_Mutation p.V666I 0.41 tolerated(0.37) benign(0.158) TCGA-IR-A3LK-01 12 66547223 66547223 G C TMBIM4 Missense_Mutation p.L35V 0.68 tolerated(0.06) possibly_damaging(0.782) TCGA-IR-A3LK-01 12 66717770 66717770 C G HELB Missense_Mutation p.Q769E 0.30 deleterious(0.03) benign(0.005) TCGA-IR-A3LK-01 12 66731855 66731855 C G HELB Missense_Mutation p.F1079L 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-IR-A3LK-01 12 66770815 66770815 C G GRIP1 Missense_Mutation p.L868F 0.42 tolerated(0.11) benign(0.007) TCGA-IR-A3LK-01 12 66770966 66770966 C G GRIP1 Silent p.L855L 0.31 TCGA-IR-A3LK-01 12 66788034 66788034 C T GRIP1 Missense_Mutation p.D643N 0.38 deleterious(0.04) probably_damaging(0.92) TCGA-IR-A3LK-01 12 66788046 66788046 C G GRIP1 Missense_Mutation p.E639Q 0.39 deleterious(0.01) probably_damaging(0.983) TCGA-IR-A3LK-01 12 66788130 66788130 C G GRIP1 Missense_Mutation p.E611Q 0.40 deleterious(0.01) benign(0.356) TCGA-IR-A3LK-01 12 6692280 6692280 C G CHD4 Splice_Site p.X1354_splice 0.59 TCGA-IR-A3LK-01 12 68055542 68055542 C G DYRK2 3'UTR 0.46 TCGA-IR-A3LK-01 12 68716864 68716864 G A MDM1 Missense_Mutation p.P264S 0.35 tolerated(0.13) benign(0.169) TCGA-IR-A3LK-01 12 69044238 69044238 C G RAP1B Missense_Mutation p.S39C 0.31 deleterious(0) benign(0.298) TCGA-IR-A3LK-01 12 69250162 69250162 G C CPM 3'UTR 0.35 TCGA-IR-A3LK-01 12 6958994 6958994 C G CDCA3 Silent p.L93L 0.54 TCGA-IR-A3LK-01 12 70760704 70760704 G A KCNMB4 Missense_Mutation p.E64K 0.38 deleterious(0.03) benign(0.012) TCGA-IR-A3LK-01 12 72013120 72013120 T C ZFC3H1 Missense_Mutation p.K1707E 0.41 tolerated(1) benign(0.003) TCGA-IR-A3LK-01 12 78401166 78401166 C T NAV3 Silent p.L616L 0.50 TCGA-IR-A3LK-01 12 86373920 86373920 C G MGAT4C Missense_Mutation p.R195T 0.40 deleterious(0) probably_damaging(0.991) TCGA-IR-A3LK-01 12 94543591 94543591 G C PLXNC1 Missense_Mutation p.D282H 0.31 deleterious(0.05) possibly_damaging(0.699) TCGA-IR-A3LK-01 12 95397464 95397464 C T NDUFA12 5'UTR 0.30 TCGA-IR-A3LK-01 12 95928089 95928089 G C USP44 5'UTR 0.52 TCGA-IR-A3LK-01 12 98850422 98850422 C G SLC9A7P1 RNA 0.45 TCGA-IR-A3LK-01 13 100544761 100544761 G C CLYBL 3'UTR 0.17 TCGA-IR-A3LK-01 13 100959510 100959510 C T PCCA Missense_Mutation p.S450L 0.35 deleterious(0) possibly_damaging(0.876) TCGA-IR-A3LK-01 13 107144440 107144440 G C EFNB2 3'UTR 0.23 TCGA-IR-A3LK-01 13 109772765 109772765 C G MYO16 Silent p.L1140L 0.31 TCGA-IR-A3LK-01 13 110822996 110822996 G A COL4A1 Missense_Mutation p.P1214S 0.26 probably_damaging(0.968) TCGA-IR-A3LK-01 13 111088663 111088663 C T COL4A2 Silent p.L258L 0.33 TCGA-IR-A3LK-01 13 111176517 111176517 G A RAB20 Missense_Mutation p.S67F 0.31 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 13 111299498 111299498 C T CARS2 Missense_Mutation p.M381I 0.24 tolerated(0.73) benign(0.002) TCGA-IR-A3LK-01 13 111918015 111918015 C T ARHGEF7 Intron 0.33 TCGA-IR-A3LK-01 13 113536508 113536508 G A ATP11A 3'UTR 0.36 TCGA-IR-A3LK-01 13 113742717 113742717 G C MCF2L Missense_Mutation p.R922T 0.21 deleterious(0.02) probably_damaging(0.947) TCGA-IR-A3LK-01 13 20356657 20356657 G A PSPC1 Missense_Mutation p.R81C 0.60 deleterious(0.01) benign(0.081) TCGA-IR-A3LK-01 13 21353838 21353838 C G XPO4 3'UTR 0.45 TCGA-IR-A3LK-01 13 21548001 21548001 G C LATS2 3'UTR 0.34 TCGA-IR-A3LK-01 13 21548010 21548010 G C LATS2 3'UTR 0.33 TCGA-IR-A3LK-01 13 23905294 23905294 C T SACS Missense_Mutation p.D4241N 0.38 probably_damaging(0.989) TCGA-IR-A3LK-01 13 24797596 24797596 G C SPATA13 Missense_Mutation p.E177Q 0.27 tolerated_low_confidence(0.17) benign(0.187) TCGA-IR-A3LK-01 13 26978201 26978201 C G CDK8 Missense_Mutation p.Q460E 0.39 tolerated_low_confidence(0.08) possibly_damaging(0.857) TCGA-IR-A3LK-01 13 28895716 28895716 G A FLT1 Missense_Mutation p.H1020Y 0.41 deleterious(0) probably_damaging(0.976) TCGA-IR-A3LK-01 13 31232305 31232305 G A USPL1 Silent p.E697E 0.30 TCGA-IR-A3LK-01 13 33261335 33261335 C T PDS5B Missense_Mutation p.S423L 0.30 tolerated(0.28) benign(0.004) TCGA-IR-A3LK-01 13 35770151 35770151 C A NBEA Missense_Mutation p.T1693K 0.36 tolerated_low_confidence(0.86) benign(0.028) TCGA-IR-A3LK-01 13 36878517 36878517 C T SPG20 Silent p.K662K 0.41 TCGA-IR-A3LK-01 13 46543770 46543770 T G ZC3H13 Missense_Mutation p.K970T 0.44 unknown(0) TCGA-IR-A3LK-01 13 47243273 47243273 C T LRCH1 Silent p.L187L 0.38 TCGA-IR-A3LK-01 13 48986181 48986201 GAGTCTTTGACTTAAATGGGT - LPAR6 In_Frame_Del p.Y120_T126del 0.42 TCGA-IR-A3LK-01 13 49075957 49075957 C G RCBTB2 Missense_Mutation p.D389H 0.50 deleterious(0.02) benign(0.199) TCGA-IR-A3LK-01 13 49075967 49075967 C T RCBTB2 Silent p.K385K 0.48 TCGA-IR-A3LK-01 13 58299562 58299562 G C PCDH17 3'UTR 0.22 TCGA-IR-A3LK-01 13 61987593 61987593 C A PCDH20 Missense_Mutation p.Q213H 0.34 tolerated(0.11) benign(0.001) TCGA-IR-A3LK-01 13 73319333 73319333 G A BORA Silent p.Q242Q 0.14 TCGA-IR-A3LK-01 13 73636341 73636341 G A KLF5 Missense_Mutation p.E202K 0.37 tolerated(0.78) benign(0.034) TCGA-IR-A3LK-01 13 73636562 73636562 G A KLF5 Silent p.V275V 0.21 TCGA-IR-A3LK-01 13 73649905 73649905 G A KLF5 Missense_Mutation p.E419K 0.33 deleterious(0) probably_damaging(0.982) TCGA-IR-A3LK-01 13 76111745 76111745 C T COMMD6 Intron 0.29 TCGA-IR-A3LK-01 13 76447803 76447803 C T C13orf45 Missense_Mutation p.S43L 0.19 tolerated_low_confidence(0.95) benign(0) TCGA-IR-A3LK-01 13 77633672 77633672 C G MYCBP2 Missense_Mutation p.D4338H 0.22 probably_damaging(0.997) TCGA-IR-A3LK-01 13 77754359 77754359 C T MYCBP2 Missense_Mutation p.R1641K 0.35 benign(0.001) TCGA-IR-A3LK-01 13 77754364 77754364 C T MYCBP2 Silent p.L1639L 0.36 TCGA-IR-A3LK-01 13 79927342 79927342 A G RBM26 Intron 0.38 TCGA-IR-A3LK-01 13 94958240 94958240 C T GPC6 Nonsense_Mutation p.Q339* 0.29 TCGA-IR-A3LK-01 13 96506724 96506724 C T UGGT2 Silent p.V1338V 0.23 TCGA-IR-A3LK-01 13 97485131 97485131 G C HS6ST3 Missense_Mutation p.E365D 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-IR-A3LK-01 13 99567589 99567589 G A DOCK9 Missense_Mutation p.H296Y 0.22 tolerated(1) possibly_damaging(0.903) TCGA-IR-A3LK-01 14 101138355 101138355 A G LINC00523 RNA 0.40 TCGA-IR-A3LK-01 14 101391163 101391163 G A SNORD113-1 RNA 0.58 TCGA-IR-A3LK-01 14 102467876 102467876 G T DYNC1H1 Missense_Mutation p.R1467I 0.44 possibly_damaging(0.849) TCGA-IR-A3LK-01 14 102517024 102517024 G C DYNC1H1 3'UTR 0.30 TCGA-IR-A3LK-01 14 102517028 102517028 G A DYNC1H1 3'UTR 0.38 TCGA-IR-A3LK-01 14 104025991 104025991 G T BAG5 3'UTR 0.31 TCGA-IR-A3LK-01 14 104026001 104026001 T C BAG5 3'UTR 0.27 TCGA-IR-A3LK-01 14 104165740 104165740 C G XRCC3 Silent p.L245L 0.50 TCGA-IR-A3LK-01 14 105180715 105180715 G A INF2 Silent p.L1072L 0.39 TCGA-IR-A3LK-01 14 105409512 105409512 C T AHNAK2 Silent p.V4092V 0.35 TCGA-IR-A3LK-01 14 105477720 105477720 C G CDCA4 Missense_Mutation p.D183H 0.59 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LK-01 14 105478048 105478048 C T CDCA4 Missense_Mutation p.M73I 0.46 deleterious(0) benign(0.444) TCGA-IR-A3LK-01 14 106391135 106391135 C G KIAA0125 3'Flank 0.39 TCGA-IR-A3LK-01 14 107048725 107048725 G A IGHV3-53 Missense_Mutation p.L99F 0.56 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-IR-A3LK-01 14 20002266 20002266 C T POTEM Missense_Mutation p.E386K 0.12 tolerated(0.14) probably_damaging(0.952) TCGA-IR-A3LK-01 14 20779661 20779661 C G CCNB1IP1 3'UTR 0.21 TCGA-IR-A3LK-01 14 21269764 21269764 G C RNASE1 Missense_Mutation p.S155C 0.33 deleterious_low_confidence(0) possibly_damaging(0.763) TCGA-IR-A3LK-01 14 21771580 21771580 C G RPGRIP1 Missense_Mutation p.I226M 0.48 deleterious(0.03) benign(0.055) TCGA-IR-A3LK-01 14 21785759 21785759 G A RPGRIP1 Intron 0.36 TCGA-IR-A3LK-01 14 21789513 21789513 G C RPGRIP1 Missense_Mutation p.K521N 0.36 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 14 21961402 21961402 G C TOX4 Missense_Mutation p.D543H 0.34 deleterious(0.01) probably_damaging(0.936) TCGA-IR-A3LK-01 14 22690353 22690353 C T TRAV35 Silent p.I104I 0.39 TCGA-IR-A3LK-01 14 23416876 23416876 G C HAUS4 Missense_Mutation p.S258C 0.41 deleterious(0) probably_damaging(0.983) TCGA-IR-A3LK-01 14 23445862 23445862 C G AJUBA Missense_Mutation p.D390H 0.40 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LK-01 14 23451250 23451250 G A AJUBA Nonsense_Mutation p.Q76* 0.55 TCGA-IR-A3LK-01 14 23793450 23793450 C G PABPN1 Missense_Mutation p.S278C 0.29 tolerated(0.05) possibly_damaging(0.659) TCGA-IR-A3LK-01 14 23884243 23884243 C G MYH7 Missense_Mutation p.M1840I 0.36 tolerated(0.3) benign(0.007) TCGA-IR-A3LK-01 14 24868463 24868463 C G NYNRIN Missense_Mutation p.S4C 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.694) TCGA-IR-A3LK-01 14 32328428 32328428 G A NUBPL 3'UTR 0.31 TCGA-IR-A3LK-01 14 32619107 32619107 G C ARHGAP5 Splice_Site p.X1315_splice 0.43 TCGA-IR-A3LK-01 14 36005286 36005286 C T INSM2 3'UTR 0.36 TCGA-IR-A3LK-01 14 38059859 38059859 C G FOXA1 3'UTR 0.46 TCGA-IR-A3LK-01 14 42077499 42077499 C G LRFN5 5'UTR 0.61 TCGA-IR-A3LK-01 14 50605450 50605450 T A SOS2 Missense_Mutation p.L946F 0.48 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LK-01 14 50666501 50666501 C G SOS2 Missense_Mutation p.D140H 0.37 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 14 50892637 50892637 G C MAP4K5 Missense_Mutation p.F795L 0.30 tolerated(0.57) benign(0.132) TCGA-IR-A3LK-01 14 51225146 51225146 C G NIN Missense_Mutation p.E868Q 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LK-01 14 51443253 51443253 C T TRIM9 3'UTR 0.44 TCGA-IR-A3LK-01 14 52471612 52471612 C G NID2 3'UTR 0.50 TCGA-IR-A3LK-01 14 52734613 52734613 C T PTGDR Silent p.F27F 0.42 TCGA-IR-A3LK-01 14 52781855 52781855 C T PTGER2 Silent p.L197L 0.58 TCGA-IR-A3LK-01 14 53513329 53513330 - T DDHD1 3'UTR 0.28 TCGA-IR-A3LK-01 14 55514034 55514034 C G SOCS4 3'UTR 0.31 TCGA-IR-A3LK-01 14 55514141 55514141 C G SOCS4 3'UTR 0.23 TCGA-IR-A3LK-01 14 55518385 55518385 G C MAPK1IP1L 5'UTR 0.42 TCGA-IR-A3LK-01 14 55609464 55609464 C G LGALS3 Missense_Mutation p.F198L 0.29 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 14 56104059 56104059 G C KTN1 Missense_Mutation p.E565Q 0.32 deleterious(0.01) possibly_damaging(0.886) TCGA-IR-A3LK-01 14 57269054 57269054 C G OTX2 Missense_Mutation p.R98T 0.33 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 14 57876918 57876918 A G NAA30 3'UTR 0.38 TCGA-IR-A3LK-01 14 58771670 58771670 G C ARID4A Silent p.L42L 0.41 TCGA-IR-A3LK-01 14 60591245 60591245 G A PCNXL4 Missense_Mutation p.E552K 0.34 tolerated(0.23) benign(0.003) TCGA-IR-A3LK-01 14 63175099 63175099 G T KCNH5 Silent p.L698L 0.25 TCGA-IR-A3LK-01 14 64408787 64408787 C T SYNE2 Missense_Mutation p.H112Y 0.49 probably_damaging(0.995) TCGA-IR-A3LK-01 14 64938256 64938256 C G AKAP5 3'UTR 0.47 TCGA-IR-A3LK-01 14 64989698 64989698 G C ZBTB1 Missense_Mutation p.E492D 0.31 tolerated(0.42) probably_damaging(0.97) TCGA-IR-A3LK-01 14 65009338 65009338 G A HSPA2 Missense_Mutation p.E591K 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.595) TCGA-IR-A3LK-01 14 65194406 65194406 G C PLEKHG3 Silent p.L19L 0.42 TCGA-IR-A3LK-01 14 67787084 67787084 G C MPP5 Missense_Mutation p.E503Q 0.35 tolerated(0.09) benign(0.21) TCGA-IR-A3LK-01 14 68282646 68282646 G A ZFYVE26 Missense_Mutation p.S12L 0.44 deleterious(0) probably_damaging(0.919) TCGA-IR-A3LK-01 14 71513704 71513704 G C PCNX Missense_Mutation p.E1348Q 0.29 deleterious(0) probably_damaging(0.953) TCGA-IR-A3LK-01 14 73989258 73989258 C G HEATR4 Missense_Mutation p.R200T 0.55 deleterious(0.04) possibly_damaging(0.848) TCGA-IR-A3LK-01 14 74036564 74036564 G C ACOT2 Missense_Mutation p.R207P 0.35 deleterious(0.01) benign(0.221) TCGA-IR-A3LK-01 14 74083729 74083729 G C ACOT6 5'UTR 0.44 TCGA-IR-A3LK-01 14 74179653 74179653 C T PNMA1 Silent p.L230L 0.33 TCGA-IR-A3LK-01 14 74196458 74196458 G C ELMSAN1 Silent p.L660L 0.35 TCGA-IR-A3LK-01 14 74400840 74400840 C T FAM161B 3'UTR 0.28 TCGA-IR-A3LK-01 14 75276095 75276095 T C YLPM1 Missense_Mutation p.Y1512H 0.44 probably_damaging(0.986) TCGA-IR-A3LK-01 14 77242382 77242382 G C VASH1 Silent p.L226L 0.45 TCGA-IR-A3LK-01 14 77294711 77294711 G - C14orf166B Frame_Shift_Del p.E56Kfs*3 0.37 TCGA-IR-A3LK-01 14 77873163 77873163 C T NOXRED1 Missense_Mutation p.E196K 0.34 tolerated(0.29) benign(0.037) TCGA-IR-A3LK-01 14 88477106 88477106 C T GPR65 5'UTR 0.34 TCGA-IR-A3LK-01 14 90778753 90778753 C T NRDE2 Missense_Mutation p.R181Q 0.36 deleterious(0.04) benign(0.284) TCGA-IR-A3LK-01 14 90778799 90778799 C G NRDE2 Missense_Mutation p.D166H 0.21 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LK-01 14 92477349 92477349 G A TRIP11 Missense_Mutation p.S432L 0.43 tolerated(0.15) benign(0.019) TCGA-IR-A3LK-01 14 92629902 92629902 G A CPSF2 3'UTR 0.35 TCGA-IR-A3LK-01 14 93282695 93282695 G T GOLGA5 Nonsense_Mutation p.E474* 0.46 TCGA-IR-A3LK-01 14 93717986 93717986 C G BTBD7 Missense_Mutation p.E589Q 0.37 deleterious(0.02) probably_damaging(0.98) TCGA-IR-A3LK-01 14 94716590 94716590 G C PPP4R4 Missense_Mutation p.E565Q 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-IR-A3LK-01 14 95932321 95932321 C G SYNE3 Missense_Mutation p.D192H 0.30 deleterious(0) possibly_damaging(0.77) TCGA-IR-A3LK-01 14 96773233 96773233 G C ATG2B Missense_Mutation p.Q1442E 0.56 tolerated(0.33) benign(0) TCGA-IR-A3LK-01 14 96944801 96944801 G C AK7 Splice_Site p.X519_splice 0.29 TCGA-IR-A3LK-01 14 96944935 96944935 C T AK7 Silent p.I563I 0.34 TCGA-IR-A3LK-01 15 101589932 101589932 C G LRRK1 Nonsense_Mutation p.S1128* 0.49 TCGA-IR-A3LK-01 15 101865104 101865104 C T PCSK6 Silent p.E775E 0.56 TCGA-IR-A3LK-01 15 102191956 102191956 G A TM2D3 Nonsense_Mutation p.Q38* 0.40 TCGA-IR-A3LK-01 15 20170015 20170015 C G IGHV1OR15-9 Missense_Mutation p.R86T 0.38 deleterious(0) probably_damaging(0.986) TCGA-IR-A3LK-01 15 20170187 20170187 C T IGHV1OR15-9 Missense_Mutation p.E29K 0.39 deleterious(0) probably_damaging(0.936) TCGA-IR-A3LK-01 15 20740076 20740076 C G GOLGA6L6 Missense_Mutation p.K558N 0.13 unknown(0) TCGA-IR-A3LK-01 15 21051218 21051218 C A POTEB2 Missense_Mutation p.K414N 0.07 deleterious(0.01) benign(0.052) TCGA-IR-A3LK-01 15 25315632 25315632 G C SNORD116-8 RNA 0.27 TCGA-IR-A3LK-01 15 27572024 27572024 G C GABRG3 Missense_Mutation p.M113I 0.56 tolerated(0.33) probably_damaging(0.968) TCGA-IR-A3LK-01 15 28517458 28517458 G A HERC2 Missense_Mutation p.S329F 0.19 benign(0.015) TCGA-IR-A3LK-01 15 29560906 29560906 C A NDNL2 3'UTR 0.32 TCGA-IR-A3LK-01 15 31294254 31294254 C A TRPM1 Missense_Mutation p.R1567I 0.39 deleterious_low_confidence(0.01) benign(0.235) TCGA-IR-A3LK-01 15 32917801 32917801 G C ARHGAP11A Missense_Mutation p.E277Q 0.39 tolerated(0.08) benign(0.024) TCGA-IR-A3LK-01 15 38786816 38786816 C T RASGRP1 Missense_Mutation p.E676K 0.28 deleterious(0) benign(0.371) TCGA-IR-A3LK-01 15 40093710 40093710 C G GPR176 Missense_Mutation p.E391Q 0.30 tolerated(0.07) possibly_damaging(0.501) TCGA-IR-A3LK-01 15 40632180 40632180 C G C15orf52 Missense_Mutation p.E61Q 0.29 tolerated(0.13) probably_damaging(0.917) TCGA-IR-A3LK-01 15 41279304 41279304 C T INO80 Missense_Mutation p.E1273K 0.57 deleterious(0) probably_damaging(0.98) TCGA-IR-A3LK-01 15 42192602 42192602 C G EHD4 3'UTR 0.45 TCGA-IR-A3LK-01 15 42483732 42483732 C G VPS39 Missense_Mutation p.E56Q 0.42 tolerated(0.49) benign(0.352) TCGA-IR-A3LK-01 15 42805600 42805600 C G SNAP23 Missense_Mutation p.Q35E 0.69 tolerated(0.2) benign(0.005) TCGA-IR-A3LK-01 15 43016684 43016684 C G CDAN1 3'UTR 0.50 TCGA-IR-A3LK-01 15 43622163 43622163 C T LCMT2 Silent p.A175A 1.00 TCGA-IR-A3LK-01 15 48433290 48433290 G C MYEF2 3'UTR 0.60 TCGA-IR-A3LK-01 15 51293237 51293237 C G AP4E1 Nonsense_Mutation p.S1037* 0.67 TCGA-IR-A3LK-01 15 51773272 51773272 C G DMXL2 Missense_Mutation p.D2011H 0.59 tolerated(0.14) possibly_damaging(0.495) TCGA-IR-A3LK-01 15 52873958 52873958 G C FAM214A 3'UTR 0.64 TCGA-IR-A3LK-01 15 58853062 58853062 G C LIPC Splice_Site p.X351_splice 0.36 TCGA-IR-A3LK-01 15 58853088 58853088 G C LIPC Missense_Mutation p.Q359H 0.37 tolerated(0.75) benign(0.053) TCGA-IR-A3LK-01 15 58888577 58888577 C G ADAM10 3'UTR 0.32 TCGA-IR-A3LK-01 15 58889522 58889522 C T ADAM10 3'UTR 0.52 TCGA-IR-A3LK-01 15 59064305 59064305 C T FAM63B Silent p.F237F 0.25 TCGA-IR-A3LK-01 15 59186369 59186369 T C SLTM Silent p.K467K 0.48 TCGA-IR-A3LK-01 15 59387098 59387098 G C RNF111 Nonstop_Mutation p.*996Sext*57 0.42 TCGA-IR-A3LK-01 15 59553683 59553683 G C MYO1E Nonsense_Mutation p.S58* 0.43 TCGA-IR-A3LK-01 15 63433500 63433500 G C LACTB Missense_Mutation p.K380N 0.24 tolerated(0.24) benign(0.02) TCGA-IR-A3LK-01 15 64388288 64388288 G C SNX1 Missense_Mutation p.E26Q 0.42 tolerated_low_confidence(0.19) possibly_damaging(0.722) TCGA-IR-A3LK-01 15 65350926 65350926 C T RASL12 Silent p.L88L 0.33 TCGA-IR-A3LK-01 15 66792466 66792466 C G RPL4 Missense_Mutation p.L322F 0.54 tolerated(0.46) benign(0.03) TCGA-IR-A3LK-01 15 66857046 66857046 C G LCTL Missense_Mutation p.D84H 0.44 deleterious(0) probably_damaging(0.987) TCGA-IR-A3LK-01 15 68613817 68613817 C G ITGA11 Missense_Mutation p.E783Q 0.47 tolerated(0.2) benign(0.079) TCGA-IR-A3LK-01 15 70959653 70959653 G A UACA Missense_Mutation p.L1124F 0.34 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LK-01 15 72142438 72142438 G C MYO9A Missense_Mutation p.L2218V 0.38 deleterious(0) benign(0.143) TCGA-IR-A3LK-01 15 72311419 72311419 G C MYO9A Silent p.L372L 0.50 TCGA-IR-A3LK-01 15 72454718 72454718 C T GRAMD2 Silent p.L319L 0.35 TCGA-IR-A3LK-01 15 72640386 72640386 C G HEXA Intron 0.48 TCGA-IR-A3LK-01 15 72700113 72700113 C G TMEM202 Nonsense_Mutation p.S234* 0.51 TCGA-IR-A3LK-01 15 73409150 73409150 G A NEO1 Missense_Mutation p.E134K 0.33 tolerated(0.1) benign(0.347) TCGA-IR-A3LK-01 15 75981682 75981682 G A CSPG4 Missense_Mutation p.P575L 0.41 deleterious(0.01) possibly_damaging(0.735) TCGA-IR-A3LK-01 15 76998282 76998282 C T SCAPER Missense_Mutation p.E737K 0.53 tolerated(0.06) probably_damaging(0.999) TCGA-IR-A3LK-01 15 78577611 78577611 G A WDR61 Nonsense_Mutation p.Q274* 0.47 TCGA-IR-A3LK-01 15 79217722 79217722 C G CTSH Missense_Mutation p.E254Q 0.48 tolerated(0.51) possibly_damaging(0.836) TCGA-IR-A3LK-01 15 80216434 80216434 G A C15ORF37 3'UTR 0.41 TCGA-IR-A3LK-01 15 81241447 81241447 C G KIAA1199 3'UTR 0.45 TCGA-IR-A3LK-01 15 83224721 83224721 C G CPEB1 Missense_Mutation p.R253T 0.46 deleterious(0.01) benign(0.234) TCGA-IR-A3LK-01 15 83776462 83776462 C T TM6SF1 Silent p.F10F 0.39 TCGA-IR-A3LK-01 15 85383866 85383866 C T ALPK3 Silent p.L654L 0.47 TCGA-IR-A3LK-01 15 86128965 86128965 G C AKAP13 Missense_Mutation p.D1358H 0.47 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LK-01 15 89402424 89402424 C G ACAN Missense_Mutation p.S2203C 0.38 deleterious(0) probably_damaging(0.984) TCGA-IR-A3LK-01 15 89740051 89740051 C G ABHD2 3'UTR 0.33 TCGA-IR-A3LK-01 15 90768586 90768586 C G SEMA4B Nonsense_Mutation p.S493* 0.39 TCGA-IR-A3LK-01 15 91141768 91141768 G T CRTC3 Intron 0.53 TCGA-IR-A3LK-01 15 91141793 91141793 G A CRTC3 Intron 0.44 TCGA-IR-A3LK-01 15 91483039 91483039 G A UNC45A Missense_Mutation p.E169K 0.38 tolerated(0.06) benign(0.285) TCGA-IR-A3LK-01 15 91509566 91509566 C T PRC1 3'UTR 0.46 TCGA-IR-A3LK-01 15 93485094 93485094 C T CHD2 Silent p.L245L 0.42 TCGA-IR-A3LK-01 15 99504315 99504315 C G IGF1R 3'UTR 0.36 TCGA-IR-A3LK-01 16 10551364 10551364 C T ATF7IP2 Nonsense_Mutation p.Q444* 0.45 TCGA-IR-A3LK-01 16 11858943 11858943 G A ZC3H7A Missense_Mutation p.H596Y 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-IR-A3LK-01 16 1292188 1292188 C G TPSAB1 Missense_Mutation p.R259G 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-IR-A3LK-01 16 1388903 1388903 G C BAIAP3 Missense_Mutation p.W79C 0.42 tolerated(0.12) probably_damaging(0.998) TCGA-IR-A3LK-01 16 1389502 1389502 G C BAIAP3 Missense_Mutation p.E137D 0.43 tolerated(0.29) benign(0.009) TCGA-IR-A3LK-01 16 14859185 14859185 C T NPIPA2 Missense_Mutation p.S323L 0.36 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-IR-A3LK-01 16 16244559 16244559 C T ABCC6 Missense_Mutation p.E1427K 0.38 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 16 17201655 17201655 C T XYLT1 3'UTR 0.35 TCGA-IR-A3LK-01 16 17201672 17201672 C G XYLT1 3'UTR 0.32 TCGA-IR-A3LK-01 16 18470621 18470621 A G NPIPA7 5'UTR 0.35 TCGA-IR-A3LK-01 16 18882157 18882157 G A SMG1 Silent p.L786L 0.43 TCGA-IR-A3LK-01 16 18890976 18890976 C T SMG1 Silent p.L453L 0.36 TCGA-IR-A3LK-01 16 2024380 2024380 G A TBL3 Missense_Mutation p.D65N 0.33 deleterious(0) probably_damaging(0.964) TCGA-IR-A3LK-01 16 20811296 20811296 G A ERI2 Missense_Mutation p.S209L 0.49 tolerated(0.37) benign(0.013) TCGA-IR-A3LK-01 16 2129136 2129136 G A TSC2 Missense_Mutation p.E1024K 0.41 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LK-01 16 2152457 2152457 G A PKD1 Silent p.V3042V 0.38 TCGA-IR-A3LK-01 16 2158721 2158721 C T PKD1 Silent p.P2149P 0.40 TCGA-IR-A3LK-01 16 21690505 21690505 C G OTOA Missense_Mutation p.A51G 0.43 tolerated_low_confidence(0.08) benign(0.39) TCGA-IR-A3LK-01 16 23478641 23478641 G A GGA2 3'UTR 0.33 TCGA-IR-A3LK-01 16 23641068 23641068 C T PALB2 Missense_Mutation p.D803N 0.37 deleterious(0) possibly_damaging(0.853) TCGA-IR-A3LK-01 16 2578542 2578542 C G AMDHD2 Missense_Mutation p.L318V 0.36 tolerated(0.36) possibly_damaging(0.66) TCGA-IR-A3LK-01 16 27710918 27710918 G A KIAA0556 Missense_Mutation p.E393K 0.47 tolerated(0.3) benign(0.287) TCGA-IR-A3LK-01 16 27751738 27751738 C G KIAA0556 Missense_Mutation p.S707W 0.50 deleterious(0.01) possibly_damaging(0.894) TCGA-IR-A3LK-01 16 2812362 2812362 G T SRRM2 Silent p.R611R 0.42 TCGA-IR-A3LK-01 16 28507050 28507050 G A APOBR Missense_Mutation p.E230K 0.30 tolerated(0.07) benign(0.256) TCGA-IR-A3LK-01 16 28847379 28847379 G A ATXN2L Silent p.Q1007Q 0.42 TCGA-IR-A3LK-01 16 28847446 28847446 G A ATXN2L Missense_Mutation p.E1030K 0.36 tolerated(1) possibly_damaging(0.486) TCGA-IR-A3LK-01 16 28993737 28993737 G C SPNS1 Missense_Mutation p.E342D 0.52 tolerated(0.07) benign(0.371) TCGA-IR-A3LK-01 16 2946427 2946427 G A FLYWCH2 5'UTR 0.48 TCGA-IR-A3LK-01 16 29825094 29825094 G A PRRT2 Missense_Mutation p.R240Q 0.43 deleterious(0.01) probably_damaging(0.99) TCGA-IR-A3LK-01 16 29845338 29845338 C T MVP Silent p.L176L 0.47 TCGA-IR-A3LK-01 16 29990151 29990151 C G TAOK2 Missense_Mutation p.S113C 0.46 deleterious(0.01) probably_damaging(0.99) TCGA-IR-A3LK-01 16 30080184 30080184 G T ALDOA Missense_Mutation p.G196V 0.52 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LK-01 16 30381122 30381122 G C TBC1D10B Missense_Mutation p.A128G 0.48 tolerated_low_confidence(0.11) benign(0.018) TCGA-IR-A3LK-01 16 30779554 30779554 G C RNF40 Missense_Mutation p.R561T 0.30 tolerated(0.57) benign(0) TCGA-IR-A3LK-01 16 30998216 30998216 G A HSD3B7 Missense_Mutation p.G196D 0.41 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 16 31090081 31090081 C T ZNF646 Silent p.V812V 0.43 TCGA-IR-A3LK-01 16 31090135 31090135 C T ZNF646 Silent p.F830F 0.38 TCGA-IR-A3LK-01 16 31090883 31090883 C G ZNF646 Missense_Mutation p.L1080V 0.43 tolerated(0.91) benign(0.001) TCGA-IR-A3LK-01 16 31094610 31094610 C A ZNF646 3'UTR 0.27 TCGA-IR-A3LK-01 16 31191478 31191478 C T FUS 5'UTR 0.45 TCGA-IR-A3LK-01 16 31282320 31282320 C G ITGAM Missense_Mutation p.S158C 0.46 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LK-01 16 31372399 31372399 C G ITGAX Missense_Mutation p.Q293E 0.39 tolerated(0.26) benign(0.039) TCGA-IR-A3LK-01 16 314676 314676 G C ITFG3 Missense_Mutation p.E470Q 0.34 deleterious(0.02) possibly_damaging(0.821) TCGA-IR-A3LK-01 16 31501802 31501802 C G SLC5A2 Silent p.L655L 0.30 TCGA-IR-A3LK-01 16 3199714 3199714 G A CASP16 Missense_Mutation p.E153K 0.60 tolerated(0.19) benign(0.102) TCGA-IR-A3LK-01 16 3443715 3443715 G A ZSCAN32 Intron 0.40 TCGA-IR-A3LK-01 16 3715983 3715983 G A TRAP1 Nonsense_Mutation p.Q458* 0.41 TCGA-IR-A3LK-01 16 3900710 3900710 G A CREBBP Missense_Mutation p.S129L 0.52 possibly_damaging(0.694) TCGA-IR-A3LK-01 16 3901001 3901001 G A CREBBP Missense_Mutation p.S32L 0.33 possibly_damaging(0.562) TCGA-IR-A3LK-01 16 4387793 4387793 G C GLIS2 3'UTR 0.33 TCGA-IR-A3LK-01 16 46509709 46509709 G A ANKRD26P1 RNA 0.60 TCGA-IR-A3LK-01 16 46513217 46513217 C A ANKRD26P1 RNA 0.54 TCGA-IR-A3LK-01 16 46990446 46990446 C T DNAJA2 3'UTR 0.59 TCGA-IR-A3LK-01 16 57070017 57070017 C A NLRC5 Nonsense_Mutation p.S878* 0.62 TCGA-IR-A3LK-01 16 57831720 57831720 G A KIFC3 Intron 0.68 TCGA-IR-A3LK-01 16 66957536 66957536 C G RRAD Missense_Mutation p.E178Q 0.36 tolerated(0.11) probably_damaging(0.999) TCGA-IR-A3LK-01 16 67213382 67213382 C G KIAA0895L Silent p.L266L 0.39 TCGA-IR-A3LK-01 16 67242232 67242232 C T LRRC29 Missense_Mutation p.D90N 0.30 deleterious(0.02) possibly_damaging(0.831) TCGA-IR-A3LK-01 16 67263777 67263777 G C FHOD1 Missense_Mutation p.L1111V 0.35 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LK-01 16 67672142 67672142 G C CTCF 3'UTR 0.27 TCGA-IR-A3LK-01 16 678628 678628 C G RAB40C 3'UTR 0.26 TCGA-IR-A3LK-01 16 68026435 68026435 C G DPEP2 Missense_Mutation p.R123T 0.33 deleterious(0.01) benign(0.202) TCGA-IR-A3LK-01 16 68869294 68869294 G A CDH1 3'UTR 0.46 TCGA-IR-A3LK-01 16 69318079 69318079 C A SNTB2 Nonsense_Mutation p.S426* 0.47 TCGA-IR-A3LK-01 16 70515274 70515274 G A COG4 Silent p.L741L 0.38 TCGA-IR-A3LK-01 16 70697963 70697963 C T MTSS1L Missense_Mutation p.E621K 0.60 tolerated(0.39) benign(0.036) TCGA-IR-A3LK-01 16 70765451 70765451 C G VAC14 Missense_Mutation p.K536N 0.26 tolerated(0.26) benign(0.127) TCGA-IR-A3LK-01 16 70796924 70796924 C G VAC14 Missense_Mutation p.E389Q 0.42 tolerated(0.1) benign(0.087) TCGA-IR-A3LK-01 16 70817361 70817361 C G VAC14 Missense_Mutation p.E231Q 0.35 deleterious(0) possibly_damaging(0.788) TCGA-IR-A3LK-01 16 71008192 71008192 C G HYDIN Missense_Mutation p.E1641Q 0.38 probably_damaging(0.969) TCGA-IR-A3LK-01 16 71487839 71487839 C T ZNF23 Intron 0.36 TCGA-IR-A3LK-01 16 71571446 71571446 G A CHST4 Missense_Mutation p.R289Q 0.42 tolerated(0.77) benign(0.057) TCGA-IR-A3LK-01 16 72133176 72133176 G C DHX38 Missense_Mutation p.Q319H 0.47 deleterious(0) possibly_damaging(0.853) TCGA-IR-A3LK-01 16 72831052 72831052 C G ZFHX3 Missense_Mutation p.Q1843H 0.25 possibly_damaging(0.9) TCGA-IR-A3LK-01 16 74719451 74719451 G C MLKL Missense_Mutation p.I251M 0.43 deleterious(0) probably_damaging(0.948) TCGA-IR-A3LK-01 16 75203198 75203198 G A ZFP1 Missense_Mutation p.D64N 0.27 tolerated(0.06) benign(0.146) TCGA-IR-A3LK-01 16 777405 777405 C T HAGHL 5'UTR 0.46 TCGA-IR-A3LK-01 16 81145947 81145947 C T PKD1L2 RNA 0.47 TCGA-IR-A3LK-01 16 81248664 81248664 G A PKD1L2 Missense_Mutation p.S200L 0.27 tolerated(0.68) benign(0.066) TCGA-IR-A3LK-01 16 85022397 85022397 C T ZDHHC7 Missense_Mutation p.G133E 0.45 tolerated_low_confidence(0.08) benign(0.002) TCGA-IR-A3LK-01 16 86546673 86546673 C G FOXF1 Missense_Mutation p.I374M 0.34 deleterious(0) probably_damaging(0.959) TCGA-IR-A3LK-01 16 8719381 8719381 G C METTL22 5'UTR 0.33 TCGA-IR-A3LK-01 16 87364787 87364787 C T FBXO31 3'UTR 0.52 TCGA-IR-A3LK-01 16 88498394 88498394 G A ZNF469 Missense_Mutation p.E1478K 0.40 possibly_damaging(0.906) TCGA-IR-A3LK-01 16 8862679 8862679 C G ABAT Intron 0.38 TCGA-IR-A3LK-01 16 88783017 88783017 G C PIEZO1 Silent p.L2292L 0.49 TCGA-IR-A3LK-01 16 89251681 89251681 C T CDH15 Silent p.L201L 0.50 TCGA-IR-A3LK-01 16 89251684 89251684 C T CDH15 Silent p.F202F 0.49 TCGA-IR-A3LK-01 16 89350571 89350571 C T ANKRD11 Silent p.K793K 0.40 TCGA-IR-A3LK-01 16 89806408 89806408 C G FANCA Missense_Mutation p.E1310Q 0.45 deleterious(0.02) possibly_damaging(0.728) TCGA-IR-A3LK-01 16 89922592 89922592 C G SPIRE2 Missense_Mutation p.I350M 0.40 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LK-01 16 89925647 89925647 C G SPIRE2 Silent p.L449L 0.37 TCGA-IR-A3LK-01 16 89977541 89977541 G C TCF25 Silent p.L642L 0.36 TCGA-IR-A3LK-01 16 89977645 89977645 G C TCF25 Nonstop_Mutation p.*677Sext*26 0.38 TCGA-IR-A3LK-01 17 10542717 10542717 G C MYH3 Silent p.L1000L 0.56 TCGA-IR-A3LK-01 17 1377928 1377928 G A MYO1C Silent p.L591L 0.75 TCGA-IR-A3LK-01 17 15519028 15519028 G C RP11-385D13.1 Missense_Mutation p.Q511E 0.68 deleterious_low_confidence(0.03) benign(0.036) TCGA-IR-A3LK-01 17 1641153 1641153 G A WDR81 3'UTR 0.62 TCGA-IR-A3LK-01 17 1641182 1641182 G C WDR81 3'UTR 0.63 TCGA-IR-A3LK-01 17 1641656 1641656 G C WDR81 3'UTR 0.53 TCGA-IR-A3LK-01 17 1641719 1641719 G C WDR81 3'UTR 0.25 TCGA-IR-A3LK-01 17 1641793 1641793 G C WDR81 3'UTR 0.75 TCGA-IR-A3LK-01 17 1641798 1641798 G A WDR81 3'UTR 0.75 TCGA-IR-A3LK-01 17 1798302 1798302 G A RPA1 Splice_Site p.X554_splice 0.69 TCGA-IR-A3LK-01 17 18138202 18138202 G A LLGL1 Missense_Mutation p.D319N 0.73 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LK-01 17 18638554 18638554 C G TRIM16L Missense_Mutation p.F276L 0.72 tolerated(0.08) possibly_damaging(0.547) TCGA-IR-A3LK-01 17 19318606 19318606 C G RNF112 Nonsense_Mutation p.S435* 0.67 TCGA-IR-A3LK-01 17 21319444 21319444 C G KCNJ12 Missense_Mutation p.L264V 0.20 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 17 25631899 25631899 G C WSB1 Missense_Mutation p.R191T 0.39 deleterious(0.05) possibly_damaging(0.501) TCGA-IR-A3LK-01 17 27086726 27086726 G C FAM222B Nonsense_Mutation p.S84* 0.41 TCGA-IR-A3LK-01 17 27239783 27239783 C T PHF12 Silent p.V602V 0.39 TCGA-IR-A3LK-01 17 27244306 27244306 C T PHF12 Silent p.L377L 0.38 TCGA-IR-A3LK-01 17 27283392 27283392 C G SEZ6 Missense_Mutation p.G942A 0.50 tolerated(0.34) benign(0.062) TCGA-IR-A3LK-01 17 28382920 28382920 G A EFCAB5 Missense_Mutation p.E737K 0.39 tolerated(0.26) benign(0.034) TCGA-IR-A3LK-01 17 28524913 28524913 G T SLC6A4 3'UTR 0.48 TCGA-IR-A3LK-01 17 28792442 28792442 G C CPD 3'UTR 0.47 TCGA-IR-A3LK-01 17 29161319 29161319 G C ATAD5 Missense_Mutation p.E74Q 0.32 tolerated(0.06) probably_damaging(0.977) TCGA-IR-A3LK-01 17 29509567 29509567 G T NF1 Nonsense_Mutation p.E258* 0.30 TCGA-IR-A3LK-01 17 29527570 29527570 C G NF1 Missense_Mutation p.S340C 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-IR-A3LK-01 17 29546122 29546122 C T NF1 Nonsense_Mutation p.Q543* 0.41 TCGA-IR-A3LK-01 17 30207769 30207769 G A UTP6 Nonsense_Mutation p.Q264* 0.47 TCGA-IR-A3LK-01 17 30771530 30771530 G A PSMD11 5'UTR 0.49 TCGA-IR-A3LK-01 17 30771541 30771541 G C PSMD11 5'UTR 0.51 TCGA-IR-A3LK-01 17 3301186 3301186 C G OR1E1 Silent p.V173V 0.54 TCGA-IR-A3LK-01 17 3379673 3379673 G C ASPA Missense_Mutation p.D74H 0.55 deleterious(0.04) possibly_damaging(0.681) TCGA-IR-A3LK-01 17 34182149 34182149 C T C17orf66 Missense_Mutation p.R544Q 0.39 tolerated(0.46) benign(0.001) TCGA-IR-A3LK-01 17 34923557 34923557 G C GGNBP2 Missense_Mutation p.V195L 0.43 tolerated(0.08) benign(0.033) TCGA-IR-A3LK-01 17 36873864 36873864 C G MLLT6 Missense_Mutation p.Q611E 0.35 deleterious(0) unknown(0) TCGA-IR-A3LK-01 17 37871593 37871593 G C ERBB2 Missense_Mutation p.E401D 0.46 deleterious(0.02) benign(0.002) TCGA-IR-A3LK-01 17 37886509 37886509 A G MIEN1 Missense_Mutation p.L42P 0.47 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LK-01 17 38296761 38296761 G A CASC3 5'UTR 0.20 TCGA-IR-A3LK-01 17 38435767 38435767 C T WIPF2 3'UTR 0.28 TCGA-IR-A3LK-01 17 38520685 38520685 G A CTD-2267D19.3 3'UTR 0.39 TCGA-IR-A3LK-01 17 39635695 39635695 C T KRT35 Silent p.R205R 0.30 TCGA-IR-A3LK-01 17 39872094 39872094 C T GAST Silent p.F92F 0.39 TCGA-IR-A3LK-01 17 39890702 39890702 G A HAP1 Missense_Mutation p.S62L 0.39 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-IR-A3LK-01 17 40010275 40010275 C G KLHL11 Missense_Mutation p.G615A 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-IR-A3LK-01 17 40766963 40766963 G C TUBG1 Missense_Mutation p.E420D 0.32 deleterious(0.02) benign(0.251) TCGA-IR-A3LK-01 17 40812669 40812669 C T TUBG2 Missense_Mutation p.H115Y 0.31 tolerated(1) benign(0.004) TCGA-IR-A3LK-01 17 4088218 4088218 C T ANKFY1 Missense_Mutation p.A574T 0.63 tolerated(0.47) benign(0.038) TCGA-IR-A3LK-01 17 40963504 40963504 C T BECN1 Intron 0.41 TCGA-IR-A3LK-01 17 40963707 40963707 C G BECN1 Missense_Mutation p.E384Q 0.40 deleterious(0.03) possibly_damaging(0.896) TCGA-IR-A3LK-01 17 42030544 42030544 C G PYY Missense_Mutation p.D68H 0.49 deleterious(0.01) possibly_damaging(0.815) TCGA-IR-A3LK-01 17 42271501 42271501 C T ATXN7L3 3'UTR 0.44 TCGA-IR-A3LK-01 17 42432383 42432383 G A FAM171A2 Missense_Mutation p.S400L 0.30 deleterious(0.04) probably_damaging(0.988) TCGA-IR-A3LK-01 17 43320550 43320550 C T FMNL1 Silent p.L692L 0.54 TCGA-IR-A3LK-01 17 43522838 43522838 C T PLEKHM1 Silent p.K945K 0.16 TCGA-IR-A3LK-01 17 43552613 43552613 G A PLEKHM1 Missense_Mutation p.S259L 0.34 deleterious(0.02) benign(0.05) TCGA-IR-A3LK-01 17 43908278 43908278 A G CRHR1 Missense_Mutation p.I277V 0.42 tolerated(0.28) benign(0.009) TCGA-IR-A3LK-01 17 44269962 44269962 C G KANSL1 5'UTR 0.20 TCGA-IR-A3LK-01 17 44380067 44380067 C T LRRC37A Silent p.L915L 0.23 TCGA-IR-A3LK-01 17 4510886 4510886 G C SMTNL2 3'UTR 0.83 TCGA-IR-A3LK-01 17 4511032 4511032 G A SMTNL2 3'UTR 0.67 TCGA-IR-A3LK-01 17 45915505 45915505 G C SCRN2 Intron 0.33 TCGA-IR-A3LK-01 17 46103678 46103678 C G COPZ2 3'UTR 0.28 TCGA-IR-A3LK-01 17 4675190 4675190 C A TM4SF5 5'UTR 0.77 TCGA-IR-A3LK-01 17 46867437 46867437 G C TTLL6 Missense_Mutation p.S419C 0.46 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LK-01 17 47486448 47486448 C T PHB Missense_Mutation p.E156K 0.31 tolerated(0.36) probably_damaging(0.938) TCGA-IR-A3LK-01 17 4804874 4804874 C T CHRNE Missense_Mutation p.D183N 0.77 deleterious(0.03) benign(0.016) TCGA-IR-A3LK-01 17 48156607 48156607 C G ITGA3 Silent p.L856L 0.49 TCGA-IR-A3LK-01 17 48222543 48222543 G C PPP1R9B Missense_Mutation p.S478C 0.41 deleterious(0) benign(0.381) TCGA-IR-A3LK-01 17 48262976 48262976 C G COL1A1 Missense_Mutation p.E1428Q 0.35 unknown(0) TCGA-IR-A3LK-01 17 48618394 48618394 G C EPN3 Missense_Mutation p.G407A 0.49 tolerated(0.36) benign(0.188) TCGA-IR-A3LK-01 17 48773314 48773314 G C ANKRD40 3'UTR 0.26 TCGA-IR-A3LK-01 17 5072095 5072095 G C USP6 Missense_Mutation p.D1088H 0.63 tolerated_low_confidence(0.07) probably_damaging(0.942) TCGA-IR-A3LK-01 17 53007533 53007533 G A TOM1L1 Missense_Mutation p.E274K 0.44 tolerated(0.08) probably_damaging(0.976) TCGA-IR-A3LK-01 17 54431374 54431374 C G ANKFN1 Missense_Mutation p.L193V 0.43 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 17 55123846 55123846 G C RNF126P1 RNA 0.55 TCGA-IR-A3LK-01 17 56247563 56247563 C G OR4D2 Missense_Mutation p.Q183E 0.49 deleterious(0.01) possibly_damaging(0.868) TCGA-IR-A3LK-01 17 56283702 56283702 C G MKS1 Silent p.R510R 0.34 TCGA-IR-A3LK-01 17 56568968 56568968 C G MTMR4 3'UTR 0.45 TCGA-IR-A3LK-01 17 57270858 57270858 C T PRR11 Silent p.I136I 0.30 TCGA-IR-A3LK-01 17 57941116 57941116 C G TUBD1 Missense_Mutation p.E390Q 0.45 deleterious(0) possibly_damaging(0.905) TCGA-IR-A3LK-01 17 58288768 58288768 T A USP32 Missense_Mutation p.I763F 0.34 tolerated(0.08) probably_damaging(0.979) TCGA-IR-A3LK-01 17 60770869 60770869 G A MRC2 3'UTR 0.50 TCGA-IR-A3LK-01 17 61432197 61432197 G C TANC2 Missense_Mutation p.E602D 0.42 tolerated(0.77) benign(0.001) TCGA-IR-A3LK-01 17 61939783 61939783 G C TCAM1P RNA 0.31 TCGA-IR-A3LK-01 17 61940093 61940093 G T TCAM1P RNA 0.26 TCGA-IR-A3LK-01 17 62474003 62474003 C G POLG2 Missense_Mutation p.M465I 0.31 deleterious(0.05) benign(0.263) TCGA-IR-A3LK-01 17 62506320 62506320 G C CEP95 Missense_Mutation p.D60H 0.49 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 17 65671646 65671646 G A PITPNC1 Missense_Mutation p.D224N 0.32 deleterious(0.04) possibly_damaging(0.903) TCGA-IR-A3LK-01 17 6718600 6718600 G C TEKT1 Missense_Mutation p.L171V 0.82 deleterious(0.03) probably_damaging(0.951) TCGA-IR-A3LK-01 17 68174439 68174439 G A KCNJ2 3'UTR 0.49 TCGA-IR-A3LK-01 17 68174614 68174614 G T KCNJ2 3'UTR 0.45 TCGA-IR-A3LK-01 17 6978263 6978263 C A CLEC10A 3'UTR 0.91 TCGA-IR-A3LK-01 17 72589173 72589173 G A C17orf77 3'UTR 0.40 TCGA-IR-A3LK-01 17 72914155 72914155 G A USH1G 3'UTR 0.34 TCGA-IR-A3LK-01 17 73094242 73094242 C T SLC16A5 Silent p.L103L 0.41 TCGA-IR-A3LK-01 17 73498414 73498414 G C CASKIN2 Nonsense_Mutation p.S914* 0.48 TCGA-IR-A3LK-01 17 7366072 7366072 C T ZBTB4 Silent p.K743K 0.62 TCGA-IR-A3LK-01 17 73820822 73820822 G A UNK 3'UTR 0.45 TCGA-IR-A3LK-01 17 7400231 7400231 C T POLR2A Missense_Mutation p.S229L 0.70 possibly_damaging(0.562) TCGA-IR-A3LK-01 17 74053615 74053615 T C SRP68 Missense_Mutation p.T283A 0.32 tolerated(1) benign(0.001) TCGA-IR-A3LK-01 17 74467961 74467961 G A RHBDF2 Silent p.F775F 0.49 TCGA-IR-A3LK-01 17 74569410 74569410 C G ST6GALNAC2 Missense_Mutation p.E133Q 0.49 possibly_damaging(0.616) TCGA-IR-A3LK-01 17 75478551 75478551 G T SEPT9 Intron 0.49 TCGA-IR-A3LK-01 17 7577065 7577065 C T TP53 Silent p.K291K 0.58 TCGA-IR-A3LK-01 17 7577077 7577077 C T TP53 Silent p.E287E 0.55 TCGA-IR-A3LK-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.59 deleterious(0) probably_damaging(0.985) TCGA-IR-A3LK-01 17 76354826 76354826 G A SOCS3 Silent p.F117F 0.37 TCGA-IR-A3LK-01 17 7641374 7641374 G C DNAH2 Intron 0.60 TCGA-IR-A3LK-01 17 7802461 7802461 G A CHD3 Missense_Mutation p.E821K 0.73 possibly_damaging(0.621) TCGA-IR-A3LK-01 17 78177625 78177625 C T CARD14 Nonsense_Mutation p.Q742* 0.71 TCGA-IR-A3LK-01 17 78177634 78177634 C G CARD14 Missense_Mutation p.L745V 0.69 deleterious(0) possibly_damaging(0.661) TCGA-IR-A3LK-01 17 78796982 78796982 C T RPTOR Silent p.V365V 0.73 TCGA-IR-A3LK-01 17 79479009 79479009 G A ACTG1 Missense_Mutation p.R95C 0.78 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-IR-A3LK-01 17 80706805 80706805 G A FN3K Silent p.E181E 0.78 TCGA-IR-A3LK-01 18 11889405 11889405 C G MPPE1 Missense_Mutation p.D159H 0.38 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LK-01 18 13072797 13072797 C G CEP192 Missense_Mutation p.Q1798E 0.45 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 18 13760567 13760567 C T RNMT 3'UTR 0.45 TCGA-IR-A3LK-01 18 14479303 14479303 C T CXADRP3 RNA 0.62 TCGA-IR-A3LK-01 18 19359615 19359615 G A MIB1 Missense_Mutation p.D293N 0.39 deleterious(0) possibly_damaging(0.813) TCGA-IR-A3LK-01 18 24434559 24434559 G C AQP4 3'UTR 0.45 TCGA-IR-A3LK-01 18 2674066 2674066 G C SMCHD1 Missense_Mutation p.R187T 0.37 tolerated(0.09) possibly_damaging(0.622) TCGA-IR-A3LK-01 18 2928604 2928604 C T LPIN2 Silent p.Q535Q 0.72 TCGA-IR-A3LK-01 18 29340254 29340254 G A SLC25A52 Missense_Mutation p.A134V 0.38 deleterious(0) probably_damaging(0.929) TCGA-IR-A3LK-01 18 31323015 31323015 G T ASXL3 Missense_Mutation p.R1068L 0.33 probably_damaging(0.998) TCGA-IR-A3LK-01 18 32418088 32418088 G A DTNA Intron 0.38 TCGA-IR-A3LK-01 18 3253901 3253901 G A MYL12A Missense_Mutation p.D66N 0.41 tolerated(0.44) benign(0.006) TCGA-IR-A3LK-01 18 32823310 32823310 G A ZNF397 Intron 0.38 TCGA-IR-A3LK-01 18 32919004 32919004 C T ZNF24 Intron 0.38 TCGA-IR-A3LK-01 18 333051 333051 C T COLEC12 Missense_Mutation p.D637N 0.28 tolerated(0.81) unknown(0) TCGA-IR-A3LK-01 18 40695512 40695512 G A RIT2 5'UTR 0.44 TCGA-IR-A3LK-01 18 40695513 40695513 A T RIT2 5'UTR 0.46 TCGA-IR-A3LK-01 18 45374926 45374926 G C SMAD2 Nonsense_Mutation p.S306* 0.38 TCGA-IR-A3LK-01 18 52889936 52889936 C G TCF4 3'UTR 0.41 TCGA-IR-A3LK-01 18 5292080 5292080 C T ZBTB14 Missense_Mutation p.E43K 0.32 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LK-01 18 55143683 55143683 G C ONECUT2 Missense_Mutation p.E415Q 0.31 deleterious(0.03) benign(0.274) TCGA-IR-A3LK-01 18 55144351 55144351 G A ONECUT2 3'UTR 0.37 TCGA-IR-A3LK-01 18 55144418 55144418 G A ONECUT2 3'UTR 0.51 TCGA-IR-A3LK-01 18 55144743 55144743 G A ONECUT2 3'UTR 0.41 TCGA-IR-A3LK-01 18 55144751 55144751 G A ONECUT2 3'UTR 0.42 TCGA-IR-A3LK-01 18 55145043 55145043 G A ONECUT2 3'UTR 0.40 TCGA-IR-A3LK-01 18 56204723 56204723 G A ALPK2 Missense_Mutation p.S899L 0.54 tolerated(0.12) benign(0.149) TCGA-IR-A3LK-01 18 56653058 56653058 G C ZNF532 3'UTR 0.38 TCGA-IR-A3LK-01 18 58039993 58039993 C T MC4R 5'UTR 0.36 TCGA-IR-A3LK-01 18 59482571 59482571 G A RNF152 3'UTR 0.50 TCGA-IR-A3LK-01 18 64172444 64172444 C T CDH19 Missense_Mutation p.D642N 0.48 tolerated(0.37) benign(0.181) TCGA-IR-A3LK-01 18 65177288 65177288 G C DSEL 3'UTR 0.33 TCGA-IR-A3LK-01 18 67534613 67534613 C G CD226 Missense_Mutation p.E289Q 0.49 tolerated(0.11) benign(0.051) TCGA-IR-A3LK-01 18 67781755 67781755 G A RTTN Silent p.V1203V 0.55 TCGA-IR-A3LK-01 18 72775483 72775483 G A ZNF407 Missense_Mutation p.D1936N 0.39 deleterious(0.02) benign(0.149) TCGA-IR-A3LK-01 18 72999996 72999996 G A TSHZ1 Silent p.E833E 0.33 TCGA-IR-A3LK-01 18 74580682 74580682 G A ZNF236 Silent p.Q133Q 0.31 TCGA-IR-A3LK-01 18 8370921 8370921 G C PTPRM Missense_Mutation p.E1030Q 0.32 tolerated(0.05) benign(0.442) TCGA-IR-A3LK-01 18 8379198 8379198 G C PTPRM Missense_Mutation p.E1216Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 18 8638852 8638852 G C RAB12 3'UTR 0.62 TCGA-IR-A3LK-01 18 9535792 9535792 G A RALBP1 Missense_Mutation p.E609K 0.37 tolerated_low_confidence(0.25) benign(0.022) TCGA-IR-A3LK-01 18 9549288 9549288 G C PPP4R1 Missense_Mutation p.L866V 0.42 tolerated(0.16) benign(0.049) TCGA-IR-A3LK-01 18 9562029 9562029 C G PPP4R1 Missense_Mutation p.L597F 0.38 tolerated(0.06) benign(0.439) TCGA-IR-A3LK-01 19 1011437 1011437 G C TMEM259 Silent p.L382L 0.31 TCGA-IR-A3LK-01 19 10201949 10201949 G A C19orf66 Silent p.R136R 0.59 TCGA-IR-A3LK-01 19 1037782 1037782 C G CNN2 Silent p.P271P 0.36 TCGA-IR-A3LK-01 19 1038077 1038077 C T CNN2 3'UTR 0.31 TCGA-IR-A3LK-01 19 11347157 11347157 C T DOCK6 Missense_Mutation p.V753M 0.32 tolerated(0.38) benign(0.003) TCGA-IR-A3LK-01 19 11762773 11762773 A C ZNF833P RNA 0.40 TCGA-IR-A3LK-01 19 11891117 11891117 G C ZNF441 Missense_Mutation p.E160Q 0.40 tolerated(0.22) probably_damaging(0.932) TCGA-IR-A3LK-01 19 12444448 12444448 G A ZNF563 5'UTR 0.45 TCGA-IR-A3LK-01 19 12758139 12758139 G C MAN2B1 Missense_Mutation p.S944C 0.44 deleterious(0) probably_damaging(0.976) TCGA-IR-A3LK-01 19 12766654 12766654 G A MAN2B1 Missense_Mutation p.P562S 0.30 tolerated(0.48) benign(0.006) TCGA-IR-A3LK-01 19 12791062 12791062 G C DHPS Silent p.T95T 0.38 TCGA-IR-A3LK-01 19 12903464 12903464 C G JUNB Missense_Mutation p.I293M 0.46 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LK-01 19 13050249 13050249 G C CALR Missense_Mutation p.Q67H 0.44 deleterious(0.01) possibly_damaging(0.866) TCGA-IR-A3LK-01 19 13319680 13319680 C T CACNA1A Missense_Mutation p.D2224N 0.22 possibly_damaging(0.741) TCGA-IR-A3LK-01 19 1364566 1364566 C A MUM1 Missense_Mutation p.F425L 0.34 deleterious(0.03) benign(0.002) TCGA-IR-A3LK-01 19 14520723 14520723 C T DDX39A Intron 0.22 TCGA-IR-A3LK-01 19 14590226 14590226 G C GIPC1 Missense_Mutation p.L256V 0.42 tolerated(1) benign(0.003) TCGA-IR-A3LK-01 19 14867138 14867138 C G EMR2 Missense_Mutation p.Q368H 0.32 deleterious(0.01) benign(0.052) TCGA-IR-A3LK-01 19 15219962 15219962 G A SYDE1 Missense_Mutation p.E62K 0.40 tolerated(0.59) benign(0.381) TCGA-IR-A3LK-01 19 15271474 15271474 C G NOTCH3 Nonstop_Mutation p.*2322Sext*106 0.38 TCGA-IR-A3LK-01 19 15366981 15366982 - T BRD4 Frame_Shift_Ins p.E549Rfs*13 0.25 TCGA-IR-A3LK-01 19 15547672 15547672 G C WIZ Silent p.L158L 0.37 TCGA-IR-A3LK-01 19 15547786 15547786 G A WIZ Silent p.I120I 0.38 TCGA-IR-A3LK-01 19 15547792 15547792 G A WIZ Silent p.I118I 0.39 TCGA-IR-A3LK-01 19 16136857 16136857 G C LINC00661 RNA 0.54 TCGA-IR-A3LK-01 19 16146459 16146459 G A LINC00905 RNA 0.47 TCGA-IR-A3LK-01 19 16192822 16192822 G A TPM4 Missense_Mutation p.E114K 0.41 deleterious(0) possibly_damaging(0.457) TCGA-IR-A3LK-01 19 16466549 16466549 G A EPS15L1 Silent p.I900I 0.48 TCGA-IR-A3LK-01 19 16631730 16631730 G C CHERP Intron 0.40 TCGA-IR-A3LK-01 19 17005173 17005173 G C CPAMD8 Intron 0.33 TCGA-IR-A3LK-01 19 17039021 17039021 G C CPAMD8 Silent p.S1103S 0.38 TCGA-IR-A3LK-01 19 17367422 17367422 G A USHBP1 Missense_Mutation p.S443L 0.38 tolerated(0.12) benign(0.05) TCGA-IR-A3LK-01 19 17396272 17396272 C T ANKLE1 Missense_Mutation p.S470L 0.41 tolerated(0.34) benign(0.013) TCGA-IR-A3LK-01 19 18047326 18047326 G T CCDC124 Nonsense_Mutation p.E33* 0.38 TCGA-IR-A3LK-01 19 18280614 18280614 G T PIK3R2 3'UTR 0.30 TCGA-IR-A3LK-01 19 19221580 19221580 C T SLC25A42 Silent p.L284L 0.38 TCGA-IR-A3LK-01 19 1925508 1925508 C G SCAMP4 3'UTR 0.89 TCGA-IR-A3LK-01 19 19788738 19788738 T C ZNF101 Silent p.P23P 0.45 TCGA-IR-A3LK-01 19 19843812 19843812 C G ZNF14 5'UTR 0.46 TCGA-IR-A3LK-01 19 2039122 2039122 G C MKNK2 3'UTR 0.21 TCGA-IR-A3LK-01 19 2039326 2039326 G A MKNK2 3'UTR 0.31 TCGA-IR-A3LK-01 19 2039500 2039500 G A MKNK2 3'UTR 0.45 TCGA-IR-A3LK-01 19 2041044 2041044 G A MKNK2 Nonsense_Mutation p.Q369* 0.52 TCGA-IR-A3LK-01 19 2114291 2114291 C T AP3D1 Missense_Mutation p.D812N 0.76 tolerated(0.07) possibly_damaging(0.631) TCGA-IR-A3LK-01 19 21609150 21609150 G A ZNF493 3'UTR 0.44 TCGA-IR-A3LK-01 19 22940786 22940786 A C ZNF99 Missense_Mutation p.I642S 0.40 deleterious(0.01) probably_damaging(0.962) TCGA-IR-A3LK-01 19 22952025 22952025 C G ZNF99 Missense_Mutation p.E35D 0.44 deleterious(0) probably_damaging(0.972) TCGA-IR-A3LK-01 19 23159703 23159703 G A ZNF728 Nonsense_Mutation p.Q146* 0.45 TCGA-IR-A3LK-01 19 2476133 2476133 G C GADD45B 5'UTR 0.33 TCGA-IR-A3LK-01 19 29213617 29213617 C G AC005307.3 RNA 0.35 TCGA-IR-A3LK-01 19 2988095 2988095 C A TLE6 Missense_Mutation p.P237T 0.44 tolerated(0.27) benign(0.144) TCGA-IR-A3LK-01 19 3015661 3015661 G C TLE2 Nonsense_Mutation p.S223* 0.45 TCGA-IR-A3LK-01 19 33417123 33417123 C G CEP89 Missense_Mutation p.E379D 0.35 deleterious(0.01) possibly_damaging(0.905) TCGA-IR-A3LK-01 19 33493247 33493247 G A RHPN2 Silent p.I337I 0.28 TCGA-IR-A3LK-01 19 34302352 34302352 G A KCTD15 Silent p.E196E 0.29 TCGA-IR-A3LK-01 19 3434306 3434306 C T NFIC Silent p.F247F 0.20 TCGA-IR-A3LK-01 19 34845788 34845788 G C KIAA0355 3'UTR 0.27 TCGA-IR-A3LK-01 19 35996882 35996882 C T DMKN Missense_Mutation p.E349K 0.20 deleterious(0.04) unknown(0) TCGA-IR-A3LK-01 19 36017549 36017549 C T SBSN Silent p.L545L 0.27 TCGA-IR-A3LK-01 19 36277396 36277396 G A ARHGAP33 Intron 0.37 TCGA-IR-A3LK-01 19 36317448 36317448 G T NPHS1 Missense_Mutation p.L1232M 0.31 deleterious(0.01) possibly_damaging(0.824) TCGA-IR-A3LK-01 19 36322209 36322209 G C NPHS1 Missense_Mutation p.Q1126E 0.32 tolerated(0.89) benign(0.021) TCGA-IR-A3LK-01 19 37238866 37238866 G C ZNF850 Missense_Mutation p.Q1026E 0.19 tolerated(1) possibly_damaging(0.741) TCGA-IR-A3LK-01 19 37643544 37643544 G A ZNF585A Silent p.F364F 0.22 TCGA-IR-A3LK-01 19 37733538 37733538 C T ZNF383 Missense_Mutation p.P134S 0.20 tolerated(0.08) benign(0.008) TCGA-IR-A3LK-01 19 37880761 37880761 C T ZNF527 Missense_Mutation p.H604Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LK-01 19 38684202 38684202 G A SIPA1L3 Missense_Mutation p.R1541Q 0.20 deleterious(0) probably_damaging(0.978) TCGA-IR-A3LK-01 19 38684216 38684216 G A SIPA1L3 Missense_Mutation p.E1546K 0.28 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 19 38865535 38865535 C G PSMD8 Silent p.L98L 0.34 TCGA-IR-A3LK-01 19 38949865 38949865 C T RYR1 Silent p.L749L 0.21 TCGA-IR-A3LK-01 19 39217615 39217615 G A ACTN4 Missense_Mutation p.E737K 0.23 deleterious(0.03) probably_damaging(0.925) TCGA-IR-A3LK-01 19 39359698 39359698 C T RINL 3'UTR 0.19 TCGA-IR-A3LK-01 19 39600725 39600725 G A PAPL Silent p.V428V 0.29 TCGA-IR-A3LK-01 19 39880311 39880311 G C PAF1 Missense_Mutation p.I87M 0.29 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 19 39998878 39998878 C G DLL3 3'UTR 0.25 TCGA-IR-A3LK-01 19 40368436 40368436 G A FCGBP Silent p.F4304F 0.25 TCGA-IR-A3LK-01 19 40513284 40513284 A G ZNF546 Missense_Mutation p.N92S 0.27 deleterious(0.01) possibly_damaging(0.621) TCGA-IR-A3LK-01 19 40728295 40728295 G A CNTD2 3'UTR 0.50 TCGA-IR-A3LK-01 19 41354584 41354584 C G CYP2A6 Missense_Mutation p.R143P 0.18 benign(0.108) TCGA-IR-A3LK-01 19 42734840 42734840 C G GSK3A 3'UTR 0.26 TCGA-IR-A3LK-01 19 42814499 42814499 G C PRR19 Missense_Mutation p.E226D 0.20 deleterious(0.04) benign(0.107) TCGA-IR-A3LK-01 19 43016551 43016551 G A CEACAM1 Silent p.L443L 0.32 TCGA-IR-A3LK-01 19 4328763 4328763 C G STAP2 Missense_Mutation p.E167Q 0.79 deleterious(0.04) possibly_damaging(0.864) TCGA-IR-A3LK-01 19 43348637 43348637 G C PSG10P RNA 0.19 TCGA-IR-A3LK-01 19 44012026 44012026 C G ETHE1 Intron 0.38 TCGA-IR-A3LK-01 19 44610712 44610712 G C ZNF224 Missense_Mutation p.Q133H 0.24 tolerated(0.24) benign(0.046) TCGA-IR-A3LK-01 19 44660812 44660812 C G ZNF234 Missense_Mutation p.Q215E 0.28 tolerated(0.09) benign(0.034) TCGA-IR-A3LK-01 19 44777789 44777789 G A ZNF233 Missense_Mutation p.G326S 0.28 tolerated(1) benign(0.001) TCGA-IR-A3LK-01 19 45430229 45430229 C T APOC1P1 RNA 0.34 TCGA-IR-A3LK-01 19 45649049 45649049 G A PPP1R37 Missense_Mutation p.E579K 0.40 deleterious(0.01) benign(0.305) TCGA-IR-A3LK-01 19 45655990 45655990 C T NKPD1 Missense_Mutation p.E569K 0.38 tolerated(0.11) possibly_damaging(0.786) TCGA-IR-A3LK-01 19 45781238 45781238 G A MARK4 Missense_Mutation p.D282N 0.19 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LK-01 19 46216318 46216318 C G FBXO46 Missense_Mutation p.D146H 0.20 tolerated(0.1) probably_damaging(0.979) TCGA-IR-A3LK-01 19 46271479 46271479 G A SIX5 Silent p.F208F 0.25 TCGA-IR-A3LK-01 19 46273546 46273546 C T DMPK 3'UTR 0.35 TCGA-IR-A3LK-01 19 46298966 46298966 C T DMWD 5'Flank 0.18 TCGA-IR-A3LK-01 19 46807342 46807342 G A HIF3A Missense_Mutation p.A72T 0.19 tolerated(0.31) benign(0.359) TCGA-IR-A3LK-01 19 47535576 47535576 C G NPAS1 Silent p.V133V 0.31 TCGA-IR-A3LK-01 19 47593402 47593402 C G ZC3H4 Missense_Mutation p.K179N 0.30 probably_damaging(0.983) TCGA-IR-A3LK-01 19 47999913 47999913 C T NAPA Intron 0.38 TCGA-IR-A3LK-01 19 48253514 48253514 G A GLTSCR2 Silent p.E123E 0.34 TCGA-IR-A3LK-01 19 48824026 48824026 G A EMP3 5'Flank 0.29 TCGA-IR-A3LK-01 19 49013817 49013817 G A LMTK3 Missense_Mutation p.P66S 0.31 benign(0.135) TCGA-IR-A3LK-01 19 49561421 49561421 G C NTF4 3'Flank 0.24 TCGA-IR-A3LK-01 19 49964112 49964112 C T ALDH16A1 Missense_Mutation p.S178F 0.28 deleterious(0) possibly_damaging(0.892) TCGA-IR-A3LK-01 19 49965835 49965835 C G ALDH16A1 Silent p.L307L 0.32 TCGA-IR-A3LK-01 19 50169213 50169213 C G BCL2L12 Missense_Mutation p.R45G 0.35 tolerated_low_confidence(0.11) benign(0) TCGA-IR-A3LK-01 19 50169991 50169991 G A BCL2L12 Silent p.L98L 0.30 TCGA-IR-A3LK-01 19 50339101 50339101 C T MED25 Missense_Mutation p.P622S 0.31 tolerated_low_confidence(0.07) benign(0.313) TCGA-IR-A3LK-01 19 50781447 50781447 G A MYH14 Silent p.R1311R 0.30 TCGA-IR-A3LK-01 19 50813076 50813076 G A MYH14 3'UTR 0.23 TCGA-IR-A3LK-01 19 51132706 51132706 C A SYT3 Nonsense_Mutation p.E376* 0.24 TCGA-IR-A3LK-01 19 51165140 51165140 G C SHANK1 3'UTR 0.19 TCGA-IR-A3LK-01 19 5119803 5119803 G A KDM4B Missense_Mutation p.E419K 0.67 possibly_damaging(0.651) TCGA-IR-A3LK-01 19 51452178 51452178 G C KLK5 Missense_Mutation p.H177D 0.27 tolerated(0.5) benign(0.023) TCGA-IR-A3LK-01 19 51671124 51671124 C G CTD-3187F8.14 Intron 0.34 TCGA-IR-A3LK-01 19 51960463 51960463 C T SIGLEC8 Missense_Mutation p.M252I 0.22 tolerated(0.86) benign(0.001) TCGA-IR-A3LK-01 19 52569558 52569558 G C ZNF841 Nonsense_Mutation p.S526* 0.22 TCGA-IR-A3LK-01 19 52905262 52905262 C G ZNF528 5'UTR 0.22 TCGA-IR-A3LK-01 19 53014124 53014124 C T ZNF578 Missense_Mutation p.L164F 0.25 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LK-01 19 53014490 53014490 C T ZNF578 Missense_Mutation p.P286S 0.24 deleterious(0.04) probably_damaging(0.989) TCGA-IR-A3LK-01 19 53282081 53282081 G C ZNF600 Intron 0.23 TCGA-IR-A3LK-01 19 53282120 53282120 G A ZNF600 5'UTR 0.23 TCGA-IR-A3LK-01 19 53518516 53518516 C T ERVV-1 Silent p.L391L 0.21 TCGA-IR-A3LK-01 19 53793868 53793868 C G BIRC8 5'UTR 0.33 TCGA-IR-A3LK-01 19 53794324 53794324 C T BIRC8 5'UTR 0.31 TCGA-IR-A3LK-01 19 53945480 53945480 G A TPM3P9 RNA 0.29 TCGA-IR-A3LK-01 19 54264452 54264452 C T MIR516A2 RNA 0.19 TCGA-IR-A3LK-01 19 54299115 54299115 G C NLRP12 Silent p.L1032L 0.29 TCGA-IR-A3LK-01 19 54318218 54318218 G A NLRP12 Missense_Mutation p.S105L 0.40 tolerated(0.1) benign(0.004) TCGA-IR-A3LK-01 19 54606438 54606438 C A NDUFA3 Silent p.L9L 0.28 TCGA-IR-A3LK-01 19 54664722 54664722 G A TMC4 Silent p.I628I 0.45 TCGA-IR-A3LK-01 19 54822829 54822829 C T LILRA5 Silent p.L189L 0.36 TCGA-IR-A3LK-01 19 55221572 55221572 G A AC098784.2 3'Flank 0.27 TCGA-IR-A3LK-01 19 55449510 55449510 G A NLRP7 Silent p.L677L 0.28 TCGA-IR-A3LK-01 19 55889252 55889252 C G TMEM190 Missense_Mutation p.F101L 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.682) TCGA-IR-A3LK-01 19 56103117 56103117 C T FIZ1 3'UTR 0.39 TCGA-IR-A3LK-01 19 56321256 56321256 G A NLRP11 Silent p.V240V 0.40 TCGA-IR-A3LK-01 19 56466659 56466659 G A NLRP8 Missense_Mutation p.R412K 0.28 tolerated(0.75) benign(0.017) TCGA-IR-A3LK-01 19 56953634 56953634 G C ZNF667 Missense_Mutation p.Q244E 0.32 tolerated(0.09) benign(0.016) TCGA-IR-A3LK-01 19 57006562 57006562 G C ZNF667-AS1 RNA 0.30 TCGA-IR-A3LK-01 19 57065696 57065696 C T ZFP28 Silent p.F514F 0.38 TCGA-IR-A3LK-01 19 57765301 57765301 G A ZNF805 Missense_Mutation p.E372K 0.26 tolerated(0.15) probably_damaging(0.964) TCGA-IR-A3LK-01 19 57910035 57910035 G A ZNF548 Missense_Mutation p.G139E 0.26 tolerated(0.36) benign(0.016) TCGA-IR-A3LK-01 19 57910718 57910718 C T ZNF548 Missense_Mutation p.H367Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 19 57931647 57931647 C G ZNF17 Missense_Mutation p.Q263E 0.35 tolerated(0.67) benign(0.07) TCGA-IR-A3LK-01 19 57946915 57946915 C G ZNF749 5'UTR 0.28 TCGA-IR-A3LK-01 19 57967211 57967211 C G VN1R1 Missense_Mutation p.R215T 0.26 tolerated(0.38) benign(0.101) TCGA-IR-A3LK-01 19 58084776 58084776 C G ZNF416 Missense_Mutation p.E166Q 0.28 deleterious(0.01) benign(0.124) TCGA-IR-A3LK-01 19 58187617 58187617 G A ZSCAN4 Missense_Mutation p.R35K 0.21 tolerated(0.9) benign(0) TCGA-IR-A3LK-01 19 58196748 58196748 C A ZNF551 Missense_Mutation p.S67Y 0.32 deleterious(0) possibly_damaging(0.71) TCGA-IR-A3LK-01 19 58265783 58265783 G A ZNF776 Missense_Mutation p.E429K 0.28 deleterious(0.02) probably_damaging(0.953) TCGA-IR-A3LK-01 19 58325933 58325933 C G ZNF552 Intron 0.29 TCGA-IR-A3LK-01 19 58331116 58331116 C G CTD-2583A14.10 5'Flank 0.23 TCGA-IR-A3LK-01 19 58331298 58331298 G A CTD-2583A14.10 Silent p.P6P 0.28 TCGA-IR-A3LK-01 19 58437871 58437871 G A ZNF418 Missense_Mutation p.H560Y 0.39 deleterious(0) possibly_damaging(0.844) TCGA-IR-A3LK-01 19 58864711 58864711 G A A1BG Intron 0.68 TCGA-IR-A3LK-01 19 58945830 58945830 G A ZNF132 Silent p.T327T 0.33 TCGA-IR-A3LK-01 19 58948493 58948493 C T ZNF132 Silent p.E51E 0.30 TCGA-IR-A3LK-01 19 59074503 59074503 C T MZF1 Missense_Mutation p.E381K 0.25 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LK-01 19 59082462 59082462 C G MZF1 Missense_Mutation p.E99Q 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-IR-A3LK-01 19 622168 622168 G T POLRMT Missense_Mutation p.S611Y 0.30 deleterious(0) probably_damaging(0.971) TCGA-IR-A3LK-01 19 6754258 6754258 G A SH2D3A Intron 0.89 TCGA-IR-A3LK-01 19 681696 681696 G C FSTL3 Missense_Mutation p.E260D 0.31 tolerated_low_confidence(0.14) possibly_damaging(0.636) TCGA-IR-A3LK-01 19 7119532 7119532 G C INSR Missense_Mutation p.S1241C 0.73 deleterious(0) possibly_damaging(0.899) TCGA-IR-A3LK-01 19 7614939 7614939 C T PNPLA6 Silent p.F594F 0.57 TCGA-IR-A3LK-01 19 7747467 7747467 G A TRAPPC5 Missense_Mutation p.D110N 0.82 tolerated(0.06) probably_damaging(0.983) TCGA-IR-A3LK-01 19 7754069 7754069 G A FCER2 3'UTR 0.77 TCGA-IR-A3LK-01 19 7927119 7927119 G C EVI5L Missense_Mutation p.E586Q 0.73 tolerated(0.15) benign(0.187) TCGA-IR-A3LK-01 19 805010 805010 C T PTBP1 Intron 0.18 TCGA-IR-A3LK-01 19 810808 810808 C G PTBP1 Missense_Mutation p.F552L 0.29 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 19 8188852 8188852 A G FBN3 Silent p.D924D 0.13 TCGA-IR-A3LK-01 19 8932741 8932741 G A ZNF558 Nonsense_Mutation p.Q20* 0.56 TCGA-IR-A3LK-01 19 8932743 8932743 G A ZNF558 Missense_Mutation p.S19F 0.56 tolerated(0.17) possibly_damaging(0.521) TCGA-IR-A3LK-01 1 100818371 100818371 C T CDC14A 5'UTR 0.26 TCGA-IR-A3LK-01 1 100933537 100933537 G T CDC14A Missense_Mutation p.L288F 0.51 deleterious(0) probably_damaging(0.978) TCGA-IR-A3LK-01 1 10163088 10163088 G A UBE4B Missense_Mutation p.R173Q 0.27 tolerated(0.7) unknown(0) TCGA-IR-A3LK-01 1 102290715 102290715 G C OLFM3 Missense_Mutation p.F153L 0.32 tolerated(1) probably_damaging(0.952) TCGA-IR-A3LK-01 1 10363419 10363419 G C KIF1B Intron 0.44 TCGA-IR-A3LK-01 1 10425556 10425556 C T KIF1B Silent p.L1488L 0.41 TCGA-IR-A3LK-01 1 10425657 10425657 C T KIF1B Missense_Mutation p.S1522L 0.48 tolerated(0.15) probably_damaging(0.974) TCGA-IR-A3LK-01 1 109350080 109350080 G A STXBP3 Silent p.L531L 0.42 TCGA-IR-A3LK-01 1 109444509 109444509 G A GPSM2 Missense_Mutation p.E299K 0.32 tolerated(0.13) possibly_damaging(0.671) TCGA-IR-A3LK-01 1 109793090 109793090 C T CELSR2 Missense_Mutation p.T130I 0.42 tolerated_low_confidence(0.17) benign(0) TCGA-IR-A3LK-01 1 111727358 111727358 G A CEPT1 3'UTR 0.46 TCGA-IR-A3LK-01 1 112525016 112525016 G A KCND3 Silent p.I111I 0.42 TCGA-IR-A3LK-01 1 114963040 114963040 C G TRIM33 Intron 0.34 TCGA-IR-A3LK-01 1 115249512 115249512 G A NRAS 3'UTR 0.41 TCGA-IR-A3LK-01 1 116234198 116234198 G C VANGL1 3'UTR 0.29 TCGA-IR-A3LK-01 1 11779846 11779846 G A DRAXIN 3'UTR 0.29 TCGA-IR-A3LK-01 1 119964793 119964793 C G HSD3B2 Silent p.V223V 0.38 TCGA-IR-A3LK-01 1 120165604 120165604 G C ZNF697 Missense_Mutation p.N454K 0.37 tolerated(0.75) possibly_damaging(0.801) TCGA-IR-A3LK-01 1 120612180 120612180 G C NOTCH2 5'UTR 0.12 TCGA-IR-A3LK-01 1 12438532 12438532 G A VPS13D Silent p.L3656L 0.48 TCGA-IR-A3LK-01 1 12943014 12943014 G C PRAMEF4 Missense_Mutation p.L68V 0.45 deleterious(0.01) possibly_damaging(0.79) TCGA-IR-A3LK-01 1 1403903 1403903 C T ATAD3C Missense_Mutation p.S410L 0.30 tolerated_low_confidence(0.2) benign(0) TCGA-IR-A3LK-01 1 144859829 144859829 G A PDE4DIP Silent p.L2085L 0.20 TCGA-IR-A3LK-01 1 146627375 146627375 C G PRKAB2 3'UTR 0.46 TCGA-IR-A3LK-01 1 147381160 147381160 G A GJA8 Missense_Mutation p.E360K 0.33 tolerated(0.83) benign(0.014) TCGA-IR-A3LK-01 1 147955334 147955334 G A PPIAL4A Missense_Mutation p.S4F 0.59 deleterious_low_confidence(0) benign(0.092) TCGA-IR-A3LK-01 1 149288052 149288052 C G RP11-403I13.8 RNA 0.11 TCGA-IR-A3LK-01 1 149369355 149369355 G C RP5-998N21.4 3'Flank 0.83 TCGA-IR-A3LK-01 1 149858613 149858613 G C HIST2H2AC Missense_Mutation p.R30P 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-IR-A3LK-01 1 149859164 149859164 G A HIST2H2AB Silent p.V101V 0.46 TCGA-IR-A3LK-01 1 150529705 150529705 G C ADAMTSL4 Silent p.R647R 0.41 TCGA-IR-A3LK-01 1 150530005 150530005 G C ADAMTSL4 Missense_Mutation p.E695Q 0.50 tolerated(0.2) possibly_damaging(0.709) TCGA-IR-A3LK-01 1 151001297 151001297 C G PRUNE Silent p.L270L 0.52 TCGA-IR-A3LK-01 1 151317606 151317606 G A RFX5 Missense_Mutation p.S70L 0.35 deleterious(0.01) benign(0.24) TCGA-IR-A3LK-01 1 151775027 151775027 C G LINGO4 Missense_Mutation p.E52Q 0.38 tolerated(0.47) possibly_damaging(0.528) TCGA-IR-A3LK-01 1 152081930 152081930 C G TCHH Missense_Mutation p.D1255H 0.42 unknown(0) TCGA-IR-A3LK-01 1 152085374 152085374 C G TCHH Missense_Mutation p.E107Q 0.47 unknown(0) TCGA-IR-A3LK-01 1 152284387 152284387 C T FLG Missense_Mutation p.R992K 0.39 probably_damaging(0.932) TCGA-IR-A3LK-01 1 152785389 152785389 C G LCE1B 3'UTR 0.29 TCGA-IR-A3LK-01 1 152800280 152800280 G T LCE1A Nonstop_Mutation p.*111Lext*6 0.30 TCGA-IR-A3LK-01 1 15386730 15386730 G A KAZN Missense_Mutation p.E327K 0.38 tolerated(0.11) benign(0.166) TCGA-IR-A3LK-01 1 153931949 153931949 C T SLC39A1 3'UTR 0.29 TCGA-IR-A3LK-01 1 153949189 153949189 G A JTB Missense_Mutation p.P62S 0.31 tolerated(0.14) benign(0.079) TCGA-IR-A3LK-01 1 154098850 154098850 C G NUP210L Silent p.L425L 0.33 TCGA-IR-A3LK-01 1 154248201 154248201 C T HAX1 3'UTR 0.41 TCGA-IR-A3LK-01 1 154309881 154309881 G A ATP8B2 Missense_Mutation p.E332K 0.47 deleterious(0.01) benign(0.005) TCGA-IR-A3LK-01 1 154407108 154407108 C G IL6R Missense_Mutation p.S191C 0.46 deleterious(0) probably_damaging(0.97) TCGA-IR-A3LK-01 1 154516547 154516547 C T TDRD10 Silent p.V204V 0.39 TCGA-IR-A3LK-01 1 154951278 154951278 C G CKS1B 3'UTR 0.42 TCGA-IR-A3LK-01 1 154951643 154951643 C T CKS1B 3'UTR 0.42 TCGA-IR-A3LK-01 1 155006447 155006447 G C DCST1 Splice_Site 0.43 TCGA-IR-A3LK-01 1 155258282 155258282 C T HCN3 3'UTR 0.42 TCGA-IR-A3LK-01 1 155327445 155327445 G A ASH1L Silent p.P2297P 0.38 TCGA-IR-A3LK-01 1 155733122 155733122 C T GON4L Silent p.E1569E 0.35 TCGA-IR-A3LK-01 1 155733142 155733142 C T GON4L Missense_Mutation p.E1563K 0.38 tolerated(1) benign(0) TCGA-IR-A3LK-01 1 155733290 155733290 T A GON4L Missense_Mutation p.E1513D 0.38 deleterious(0) possibly_damaging(0.801) TCGA-IR-A3LK-01 1 155734823 155734823 C G GON4L Missense_Mutation p.E1481Q 0.55 deleterious(0) possibly_damaging(0.859) TCGA-IR-A3LK-01 1 155989846 155989846 C T SSR2 Missense_Mutation p.R38Q 0.42 tolerated(0.1) possibly_damaging(0.517) TCGA-IR-A3LK-01 1 156047250 156047250 G A MEX3A Silent p.I226I 0.39 TCGA-IR-A3LK-01 1 156376849 156376849 G C C1orf61 Intron 0.33 TCGA-IR-A3LK-01 1 156786567 156786567 C G SH2D2A 5'UTR 0.41 TCGA-IR-A3LK-01 1 158226847 158226847 C T CD1A Silent p.L292L 0.41 TCGA-IR-A3LK-01 1 158259636 158259636 G A CD1C 5'UTR 0.30 TCGA-IR-A3LK-01 1 158300813 158300813 G A CD1B Missense_Mutation p.S34L 0.32 tolerated(0.09) benign(0.38) TCGA-IR-A3LK-01 1 158736195 158736195 G A OR6N1 Missense_Mutation p.S93L 0.32 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 1 160276954 160276954 G A COPA Missense_Mutation p.S434L 0.29 tolerated(0.06) benign(0.009) TCGA-IR-A3LK-01 1 16060403 16060403 C T PLEKHM2 Nonsense_Mutation p.R1012* 0.49 TCGA-IR-A3LK-01 1 160766081 160766081 C G LY9 Missense_Mutation p.S35C 0.37 tolerated(0.17) benign(0.014) TCGA-IR-A3LK-01 1 160990992 160990992 G A F11R 5'UTR 0.38 TCGA-IR-A3LK-01 1 161130180 161130180 C T USP21 5'UTR 0.50 TCGA-IR-A3LK-01 1 162326791 162326791 G A NOS1AP Silent p.R268R 0.28 TCGA-IR-A3LK-01 1 162337746 162337746 G C NOS1AP 3'UTR 0.40 TCGA-IR-A3LK-01 1 16237768 16237768 G C SPEN Missense_Mutation p.Q405H 0.31 probably_damaging(0.998) TCGA-IR-A3LK-01 1 162467746 162467746 C G UHMK1 5'UTR 0.31 TCGA-IR-A3LK-01 1 16260296 16260296 G C SPEN Missense_Mutation p.D2521H 0.32 possibly_damaging(0.875) TCGA-IR-A3LK-01 1 16330742 16330742 G C C1orf64 5'UTR 0.41 TCGA-IR-A3LK-01 1 166959038 166959038 G A MAEL Missense_Mutation p.G66E 0.44 tolerated(0.15) possibly_damaging(0.675) TCGA-IR-A3LK-01 1 167190159 167190159 C G POU2F1 Missense_Mutation p.Q9E 0.40 deleterious_low_confidence(0.02) unknown(0) TCGA-IR-A3LK-01 1 167839599 167839599 C G ADCY10 Missense_Mutation p.L504F 0.46 deleterious(0.01) probably_damaging(0.943) TCGA-IR-A3LK-01 1 169582309 169582309 C A SELP Missense_Mutation p.M211I 0.30 deleterious(0.01) benign(0.426) TCGA-IR-A3LK-01 1 169806152 169806152 G C C1orf112 Missense_Mutation p.E542Q 0.31 deleterious(0.03) possibly_damaging(0.586) TCGA-IR-A3LK-01 1 170115219 170115219 C G METTL11B 5'UTR 0.42 TCGA-IR-A3LK-01 1 171165874 171165874 G A FMO2 Silent p.Q136Q 0.39 TCGA-IR-A3LK-01 1 171509776 171509776 G C PRRC2C Missense_Mutation p.K1055N 0.36 unknown(0) TCGA-IR-A3LK-01 1 175066664 175066664 C G TNN Missense_Mutation p.S567C 0.50 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LK-01 1 1823929 1823929 C T GNB1 5'Flank 0.41 TCGA-IR-A3LK-01 1 185260679 185260679 G A SWT1 3'UTR 0.34 TCGA-IR-A3LK-01 1 186157140 186157140 G T HMCN1 Missense_Mutation p.G5514W 0.43 probably_damaging(0.997) TCGA-IR-A3LK-01 1 18808470 18808470 C T KLHDC7A Missense_Mutation p.S332L 0.52 tolerated(0.21) benign(0.032) TCGA-IR-A3LK-01 1 193155321 193155321 G A B3GALT2 5'UTR 0.36 TCGA-IR-A3LK-01 1 19651254 19651254 C A PQLC2 Missense_Mutation p.Q98K 0.42 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LK-01 1 196748399 196748399 G A CFHR3 Missense_Mutation p.D56N 0.39 tolerated(0.18) probably_damaging(0.994) TCGA-IR-A3LK-01 1 197383052 197383052 G C CRB1 Intron 0.50 TCGA-IR-A3LK-01 1 19952930 19952930 G C MINOS1-NBL1 Intron 0.27 TCGA-IR-A3LK-01 1 19992308 19992308 C T HTR6 Missense_Mutation p.S21L 0.45 deleterious(0.01) benign(0.038) TCGA-IR-A3LK-01 1 200377147 200377147 G C ZNF281 Missense_Mutation p.Q563E 0.46 deleterious(0) benign(0.197) TCGA-IR-A3LK-01 1 200941874 200941874 G C KIF21B 3'Flank 0.41 TCGA-IR-A3LK-01 1 201750173 201750173 G A NAV1 Missense_Mutation p.E467K 0.42 deleterious(0.05) probably_damaging(0.962) TCGA-IR-A3LK-01 1 201752765 201752765 G C NAV1 Missense_Mutation p.M863I 0.44 tolerated(0.33) benign(0.174) TCGA-IR-A3LK-01 1 201752930 201752930 G C NAV1 Missense_Mutation p.E918D 0.45 tolerated(0.46) benign(0.001) TCGA-IR-A3LK-01 1 201789016 201789016 G A NAV1 Missense_Mutation p.D1864N 0.42 deleterious(0.03) probably_damaging(0.936) TCGA-IR-A3LK-01 1 201970888 201970888 C A RNPEP Silent p.I473I 0.61 TCGA-IR-A3LK-01 1 203823029 203823029 C T ZC3H11A 3'UTR 0.51 TCGA-IR-A3LK-01 1 204110443 204110443 C G ETNK2 Missense_Mutation p.G262R 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-IR-A3LK-01 1 204588748 204588748 C G LRRN2 Missense_Mutation p.E125Q 0.38 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 1 20645915 20645915 G A VWA5B1 Missense_Mutation p.M294I 0.45 deleterious(0) probably_damaging(0.98) TCGA-IR-A3LK-01 1 206637129 206637129 G A SRGAP2 3'UTR 0.43 TCGA-IR-A3LK-01 1 206941868 206941868 G C IL10 3'UTR 0.29 TCGA-IR-A3LK-01 1 207196378 207196378 G A C1orf116 Missense_Mutation p.S244L 0.36 tolerated(0.05) benign(0.022) TCGA-IR-A3LK-01 1 207196511 207196511 G C C1orf116 Missense_Mutation p.P200A 0.09 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LK-01 1 208218010 208218010 G A PLXNA2 Silent p.I1239I 0.37 TCGA-IR-A3LK-01 1 210012466 210012466 C T DIEXF Silent p.F425F 0.39 TCGA-IR-A3LK-01 1 211923222 211923222 G A LPGAT1 3'UTR 0.44 TCGA-IR-A3LK-01 1 212617779 212617779 G A NENF Missense_Mutation p.D113N 0.35 tolerated(0.11) benign(0.001) TCGA-IR-A3LK-01 1 213058632 213058632 C G FLVCR1 Intron 0.45 TCGA-IR-A3LK-01 1 214170276 214170276 C G PROX1 Nonsense_Mutation p.S133* 0.41 TCGA-IR-A3LK-01 1 215963499 215963499 C T USH2A Missense_Mutation p.E3362K 0.27 benign(0.299) TCGA-IR-A3LK-01 1 216166366 216166366 C T USH2A Silent p.P2267P 0.51 TCGA-IR-A3LK-01 1 216462663 216462663 C G USH2A Missense_Mutation p.D644H 0.37 benign(0.012) TCGA-IR-A3LK-01 1 220804457 220804457 C T MARK1 Silent p.F330F 0.42 TCGA-IR-A3LK-01 1 220836758 220836758 G A MARK1 3'Flank 0.45 TCGA-IR-A3LK-01 1 22159026 22159026 G A HSPG2 Silent p.F3723F 0.30 TCGA-IR-A3LK-01 1 22328167 22328167 C G CELA3A 5'UTR 0.43 TCGA-IR-A3LK-01 1 22333386 22333386 C T CELA3A Silent p.L126L 0.42 TCGA-IR-A3LK-01 1 224600996 224600996 C G WDR26 Intron 0.31 TCGA-IR-A3LK-01 1 225600261 225600261 G C LBR Missense_Mutation p.L327V 0.61 deleterious(0.03) benign(0.113) TCGA-IR-A3LK-01 1 225706921 225706921 C T ENAH Missense_Mutation p.E261K 0.47 tolerated_low_confidence(0.38) unknown(0) TCGA-IR-A3LK-01 1 226465515 226465515 C T LIN9 Missense_Mutation p.E231K 0.42 tolerated(0.05) probably_damaging(0.98) TCGA-IR-A3LK-01 1 228333448 228333448 C G GUK1 Intron 0.38 TCGA-IR-A3LK-01 1 228336139 228336139 G C GUK1 Intron 0.33 TCGA-IR-A3LK-01 1 228596204 228596204 C A TRIM17 Missense_Mutation p.D378Y 0.29 deleterious(0.04) probably_damaging(0.973) TCGA-IR-A3LK-01 1 228645074 228645074 C G HIST3H2A 3'UTR 0.46 TCGA-IR-A3LK-01 1 228645397 228645397 G C HIST3H2A Missense_Mutation p.S41W 0.47 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-IR-A3LK-01 1 23241560 23241560 C T EPHB2 3'Flank 0.50 TCGA-IR-A3LK-01 1 232943202 232943202 C G MAP10 Silent p.V811V 0.47 TCGA-IR-A3LK-01 1 23418235 23418235 G A LUZP1 Silent p.S840S 0.48 TCGA-IR-A3LK-01 1 235344897 235344897 C T ARID4B Intron 0.45 TCGA-IR-A3LK-01 1 235345463 235345463 C T ARID4B Missense_Mutation p.R924Q 0.41 tolerated_low_confidence(0.58) probably_damaging(0.99) TCGA-IR-A3LK-01 1 235345845 235345848 CTTC TTA ARID4B Nonsense_Mutation p.E796* 0.26 TCGA-IR-A3LK-01 1 235392695 235392695 C G ARID4B Missense_Mutation p.E250Q 0.40 tolerated(0.29) benign(0.07) TCGA-IR-A3LK-01 1 236646750 236646750 G C EDARADD 3'Flank 0.47 TCGA-IR-A3LK-01 1 23751196 23751196 G A TCEA3 5'UTR 0.30 TCGA-IR-A3LK-01 1 237765322 237765322 C G RYR2 Intron 0.28 TCGA-IR-A3LK-01 1 241834403 241834403 G T WDR64 Missense_Mutation p.D102Y 0.33 deleterious(0) probably_damaging(0.94) TCGA-IR-A3LK-01 1 241913012 241913012 C G WDR64 Missense_Mutation p.I576M 0.37 tolerated(0.14) benign(0.089) TCGA-IR-A3LK-01 1 242687403 242687403 T G PLD5 Missense_Mutation p.D59A 0.37 tolerated(0.05) benign(0.079) TCGA-IR-A3LK-01 1 243354474 243354474 G C CEP170 Missense_Mutation p.D318E 0.42 tolerated(0.43) benign(0.2) TCGA-IR-A3LK-01 1 245530223 245530223 G C KIF26B Missense_Mutation p.D185H 0.20 deleterious(0.01) unknown(0) TCGA-IR-A3LK-01 1 24664502 24664502 C T GRHL3 Silent p.F287F 0.57 TCGA-IR-A3LK-01 1 246704248 246704248 G T TFB2M 3'UTR 0.45 TCGA-IR-A3LK-01 1 24684860 24684860 C T STPG1 3'UTR 0.26 TCGA-IR-A3LK-01 1 247265330 247265330 C G ZNF669 Missense_Mutation p.R116T 0.46 deleterious(0) possibly_damaging(0.766) TCGA-IR-A3LK-01 1 248551419 248551419 C G OR2T6 Silent p.A170A 0.42 TCGA-IR-A3LK-01 1 249151477 249151477 C T ZNF692 Missense_Mutation p.R149Q 0.45 tolerated(0.47) benign(0.001) TCGA-IR-A3LK-01 1 26136171 26136171 C T SEPN1 Intron 0.33 TCGA-IR-A3LK-01 1 26227541 26227541 G C STMN1 Intron 0.47 TCGA-IR-A3LK-01 1 27218951 27218951 C G GPATCH3 Missense_Mutation p.E438Q 0.47 deleterious(0.01) probably_damaging(0.952) TCGA-IR-A3LK-01 1 28598238 28598238 G A SESN2 Silent p.L70L 0.32 TCGA-IR-A3LK-01 1 28793215 28793215 C T PHACTR4 Silent p.V263V 0.47 TCGA-IR-A3LK-01 1 28904068 28904068 G A TRNAU1AP Missense_Mutation p.E262K 0.42 deleterious(0) probably_damaging(0.985) TCGA-IR-A3LK-01 1 32201189 32201189 C T BAI2 Silent p.Q1115Q 0.38 TCGA-IR-A3LK-01 1 32655836 32655836 G C TXLNA Missense_Mutation p.E317Q 0.41 deleterious(0.02) probably_damaging(0.928) TCGA-IR-A3LK-01 1 32831921 32831921 C G BSDC1 3'Flank 0.33 TCGA-IR-A3LK-01 1 33146791 33146791 G C SYNC 3'UTR 0.39 TCGA-IR-A3LK-01 1 3319477 3319477 G A PRDM16 Missense_Mutation p.E267K 0.26 tolerated(0.25) benign(0.097) TCGA-IR-A3LK-01 1 33789883 33789883 C G PHC2 3'UTR 0.46 TCGA-IR-A3LK-01 1 33789941 33789941 C G PHC2 3'UTR 0.43 TCGA-IR-A3LK-01 1 33960287 33960287 C G ZSCAN20 Silent p.L781L 0.38 TCGA-IR-A3LK-01 1 34049381 34049381 C G CSMD2 Silent p.L2369L 0.41 TCGA-IR-A3LK-01 1 35454253 35454253 T A ZMYM6 Missense_Mutation p.E810D 0.41 deleterious(0.04) possibly_damaging(0.501) TCGA-IR-A3LK-01 1 35579238 35579238 C T ZMYM1 Nonsense_Mutation p.R603* 0.46 TCGA-IR-A3LK-01 1 38261252 38261252 G A MANEAL Intron 0.73 TCGA-IR-A3LK-01 1 39853296 39853296 G C MACF1 Missense_Mutation p.E2866Q 0.33 possibly_damaging(0.632) TCGA-IR-A3LK-01 1 41157248 41157248 C T NFYC 5'Flank 0.42 TCGA-IR-A3LK-01 1 43213019 43213019 C G LEPRE1 Missense_Mutation p.G660A 0.37 deleterious(0) probably_damaging(0.954) TCGA-IR-A3LK-01 1 45805812 45805812 C T MUTYH Intron 0.55 TCGA-IR-A3LK-01 1 45977049 45977049 G C PRDX1 Missense_Mutation p.I184M 0.46 tolerated(0.24) probably_damaging(1) TCGA-IR-A3LK-01 1 45980297 45980297 G A PRDX1 Silent p.I132I 0.38 TCGA-IR-A3LK-01 1 52498428 52498428 C T KTI12 Missense_Mutation p.E336K 0.41 deleterious(0.01) possibly_damaging(0.484) TCGA-IR-A3LK-01 1 53694605 53694605 C T MAGOH Missense_Mutation p.D94N 0.27 tolerated(1) benign(0.017) TCGA-IR-A3LK-01 1 54428065 54428065 G A LRRC42 Missense_Mutation p.E304K 0.49 deleterious(0.01) possibly_damaging(0.849) TCGA-IR-A3LK-01 1 55586325 55586325 G A USP24 Silent p.L1484L 0.32 TCGA-IR-A3LK-01 1 59249733 59249733 G T JUN 5'UTR 0.33 TCGA-IR-A3LK-01 1 62738964 62738964 C T KANK4 Silent p.L604L 0.49 TCGA-IR-A3LK-01 1 6310673 6310673 C T GPR153 Missense_Mutation p.E331K 0.42 tolerated(0.06) benign(0.146) TCGA-IR-A3LK-01 1 67185048 67185048 G C SGIP1 Missense_Mutation p.E568Q 0.39 deleterious(0) probably_damaging(0.949) TCGA-IR-A3LK-01 1 70385032 70385032 G A LRRC7 Intron 0.33 TCGA-IR-A3LK-01 1 70652990 70652990 G A LRRC40 Missense_Mutation p.S122F 0.41 deleterious(0.01) possibly_damaging(0.583) TCGA-IR-A3LK-01 1 78034071 78034071 C T ZZZ3 Silent p.Q804Q 0.31 TCGA-IR-A3LK-01 1 8418579 8418579 G A RERE Missense_Mutation p.P1339L 0.43 unknown(0) TCGA-IR-A3LK-01 1 84702793 84702793 G A PRKACB 3'UTR 0.33 TCGA-IR-A3LK-01 1 84768891 84768891 G A SAMD13 Missense_Mutation p.E6K 0.37 tolerated_low_confidence(0.16) benign(0.023) TCGA-IR-A3LK-01 1 85112062 85112062 C G SSX2IP 3'UTR 0.45 TCGA-IR-A3LK-01 1 85462586 85462586 C T MCOLN2 5'UTR 0.50 TCGA-IR-A3LK-01 1 89476775 89476775 C T GBP3 Missense_Mutation p.D392N 0.36 tolerated(0.18) benign(0.009) TCGA-IR-A3LK-01 1 90487841 90487841 C G ZNF326 Silent p.V446V 0.25 TCGA-IR-A3LK-01 1 92554440 92554440 G C BTBD8 Missense_Mutation p.R112T 0.39 tolerated(0.24) benign(0.113) TCGA-IR-A3LK-01 1 92647579 92647579 G C KIAA1107 Missense_Mutation p.E1009Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 1 92789379 92789379 C A RPAP2 Nonsense_Mutation p.S301* 0.31 TCGA-IR-A3LK-01 1 9322194 9322194 C T H6PD Silent p.L274L 0.50 TCGA-IR-A3LK-01 1 93826556 93826556 C T DR1 3'UTR 0.33 TCGA-IR-A3LK-01 1 94079453 94079453 G C BCAR3 Intron 0.35 TCGA-IR-A3LK-01 1 94463474 94463474 G A ABCA4 Silent p.S2224S 0.38 TCGA-IR-A3LK-01 1 95363403 95363403 G A CNN3 Silent p.I295I 0.40 TCGA-IR-A3LK-01 1 99356331 99356331 C T LPPR5 3'Flank 0.38 TCGA-IR-A3LK-01 1 99772614 99772614 G C LPPR4 3'UTR 0.46 TCGA-IR-A3LK-01 1 99772760 99772760 G A LPPR4 3'UTR 0.47 TCGA-IR-A3LK-01 20 18297521 18297521 G C ZNF133 3'UTR 0.73 TCGA-IR-A3LK-01 20 21335437 21335437 C T XRN2 Silent p.L649L 0.57 TCGA-IR-A3LK-01 20 2297832 2297832 C T TGM3 Missense_Mutation p.S263F 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-IR-A3LK-01 20 2637610 2637610 G C NOP56 Intron 0.22 TCGA-IR-A3LK-01 20 29896334 29896334 G A DEFB116 Nonsense_Mutation p.Q19* 0.41 TCGA-IR-A3LK-01 20 29965028 29965028 G C DEFB118 3'Flank 0.50 TCGA-IR-A3LK-01 20 3090896 3090896 G C UBOX5 Missense_Mutation p.F494L 0.21 tolerated(0.46) benign(0.002) TCGA-IR-A3LK-01 20 3103193 3103193 G C UBOX5 Missense_Mutation p.S31C 0.18 deleterious(0.01) benign(0.323) TCGA-IR-A3LK-01 20 31291246 31291246 G A COMMD7 Nonsense_Mutation p.Q181* 0.47 TCGA-IR-A3LK-01 20 3143270 3143270 C G LZTS3 3'UTR 0.22 TCGA-IR-A3LK-01 20 31608159 31608159 C G BPIFB2 Missense_Mutation p.S369C 0.25 tolerated(0.1) probably_damaging(0.974) TCGA-IR-A3LK-01 20 3183919 3183919 G C DDRGK1 Missense_Mutation p.R79G 0.20 deleterious(0.01) benign(0.078) TCGA-IR-A3LK-01 20 3183980 3183980 C G DDRGK1 Silent p.P58P 0.14 TCGA-IR-A3LK-01 20 3214933 3214933 C G SLC4A11 Missense_Mutation p.E150Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 20 32345025 32345025 C A ZNF341 Missense_Mutation p.F271L 0.33 tolerated(0.44) benign(0.084) TCGA-IR-A3LK-01 20 3268354 3268354 C G C20orf194 Missense_Mutation p.E804Q 0.26 tolerated(0.17) possibly_damaging(0.766) TCGA-IR-A3LK-01 20 33328287 33328287 C T NCOA6 Missense_Mutation p.E1925K 0.38 possibly_damaging(0.54) TCGA-IR-A3LK-01 20 33337504 33337504 G A NCOA6 Missense_Mutation p.H832Y 0.44 probably_damaging(0.985) TCGA-IR-A3LK-01 20 34021779 34021779 G A GDF5 Silent p.F478F 0.32 TCGA-IR-A3LK-01 20 34090757 34090757 G A CEP250 Silent p.Q1520Q 0.36 TCGA-IR-A3LK-01 20 34526643 34526643 G A PHF20 Silent p.P775P 0.30 TCGA-IR-A3LK-01 20 3649569 3649569 G A ADAM33 3'UTR 0.12 TCGA-IR-A3LK-01 20 36640387 36640387 G C TTI1 Nonsense_Mutation p.S611* 0.34 TCGA-IR-A3LK-01 20 3684498 3684498 G A SIGLEC1 Missense_Mutation p.S316L 0.12 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LK-01 20 36888914 36888914 G A KIAA1755 5'UTR 0.35 TCGA-IR-A3LK-01 20 39803801 39803801 C A PLCG1 3'UTR 0.26 TCGA-IR-A3LK-01 20 39831522 39831522 C T ZHX3 Missense_Mutation p.A679T 0.39 tolerated(0.54) benign(0.008) TCGA-IR-A3LK-01 20 40126000 40126001 - T CHD6 Intron 0.31 TCGA-IR-A3LK-01 20 4162935 4162935 C T SMOX Missense_Mutation p.S270L 0.20 tolerated(0.64) benign(0.119) TCGA-IR-A3LK-01 20 42320836 42320836 C G MYBL2 Missense_Mutation p.I180M 0.59 tolerated(0.4) probably_damaging(0.932) TCGA-IR-A3LK-01 20 42683061 42683061 A T TOX2 Missense_Mutation p.R258S 0.44 deleterious(0) probably_damaging(0.981) TCGA-IR-A3LK-01 20 43577512 43577512 G C TOMM34 Missense_Mutation p.S186C 0.51 deleterious(0.03) possibly_damaging(0.88) TCGA-IR-A3LK-01 20 44521502 44521502 C T CTSA Missense_Mutation p.P213S 0.42 tolerated(0.63) benign(0) TCGA-IR-A3LK-01 20 45607194 45607194 G A EYA2 Intron 0.20 TCGA-IR-A3LK-01 20 45853105 45853105 C T ZMYND8 Missense_Mutation p.E995K 0.39 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 20 47256415 47256415 C T PREX1 Missense_Mutation p.E1265K 0.41 deleterious(0) benign(0.14) TCGA-IR-A3LK-01 20 4776485 4776485 G C RASSF2 Missense_Mutation p.S88C 0.15 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LK-01 20 47850216 47850216 C T DDX27 Missense_Mutation p.R446C 0.51 deleterious(0) probably_damaging(0.953) TCGA-IR-A3LK-01 20 49458338 49458338 C G BCAS4 Missense_Mutation p.F130L 0.33 tolerated(0.18) benign(0.034) TCGA-IR-A3LK-01 20 5100548 5100548 G A PCNA 5'UTR 0.20 TCGA-IR-A3LK-01 20 52774666 52774666 C G CYP24A1 Missense_Mutation p.D399H 0.40 deleterious(0.01) benign(0.245) TCGA-IR-A3LK-01 20 57268911 57268911 C T NPEPL1 Missense_Mutation p.S90L 0.29 deleterious(0) benign(0.091) TCGA-IR-A3LK-01 20 5987916 5987916 G C CRLS1 Intron 0.19 TCGA-IR-A3LK-01 20 6031429 6031429 G A LRRN4 Nonsense_Mutation p.Q286* 0.20 TCGA-IR-A3LK-01 20 61595652 61595652 C G SLC17A9 Missense_Mutation p.H299D 0.60 deleterious(0.02) benign(0.062) TCGA-IR-A3LK-01 20 61809853 61809853 G C MIR124-3 RNA 0.94 TCGA-IR-A3LK-01 20 62492971 62492971 C T C20ORF135 Missense_Mutation p.E83K 0.94 possibly_damaging(0.497) TCGA-IR-A3LK-01 20 62854649 62854649 C T MYT1 Missense_Mutation p.S822F 0.64 benign(0.097) TCGA-IR-A3LK-01 20 7963053 7963053 G A TMX4 Nonsense_Mutation p.Q299* 0.11 TCGA-IR-A3LK-01 20 7982144 7982144 G A TMX4 Missense_Mutation p.H113Y 0.11 deleterious(0) probably_damaging(0.953) TCGA-IR-A3LK-01 20 8719976 8719976 C T PLCB1 Silent p.H759H 0.47 TCGA-IR-A3LK-01 20 9518573 9518573 C G PAK7 3'UTR 0.57 TCGA-IR-A3LK-01 20 9543638 9543638 C A PAK7 Missense_Mutation p.V506L 0.42 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LK-01 21 11058273 11058273 C G BAGE2 RNA 0.10 TCGA-IR-A3LK-01 21 28304448 28304448 C A ADAMTS5 Missense_Mutation p.D642Y 0.43 deleterious(0.03) probably_damaging(0.994) TCGA-IR-A3LK-01 21 30316810 30316810 G C LTN1 Missense_Mutation p.L1339V 0.16 tolerated(1) benign(0.038) TCGA-IR-A3LK-01 21 30925920 30925920 C G GRIK1 Missense_Mutation p.E905Q 0.40 tolerated_low_confidence(0.48) benign(0.002) TCGA-IR-A3LK-01 21 31587732 31587732 G C CLDN8 Missense_Mutation p.T171R 0.44 deleterious(0) probably_damaging(0.963) TCGA-IR-A3LK-01 21 33104165 33104165 G C SCAF4 5'UTR 0.52 TCGA-IR-A3LK-01 21 33694162 33694162 G A URB1 Silent p.F1811F 0.37 TCGA-IR-A3LK-01 21 33694880 33694880 G A URB1 Silent p.L1750L 0.49 TCGA-IR-A3LK-01 21 33984523 33984523 C G C21orf59 Missense_Mutation p.E11Q 0.32 tolerated(0.2) benign(0.256) TCGA-IR-A3LK-01 21 34099122 34099122 C G SYNJ1 Missense_Mutation p.E68Q 0.52 deleterious(0.02) probably_damaging(0.944) TCGA-IR-A3LK-01 21 34399424 34399424 C G OLIG2 Missense_Mutation p.S85C 0.41 deleterious(0) possibly_damaging(0.785) TCGA-IR-A3LK-01 21 34443740 34443740 G C OLIG1 3'UTR 0.35 TCGA-IR-A3LK-01 21 37665756 37665756 G A DOPEY2 Missense_Mutation p.A2262T 0.29 tolerated(0.4) benign(0.001) TCGA-IR-A3LK-01 21 37747582 37747582 C T MORC3 Silent p.I936I 0.43 TCGA-IR-A3LK-01 21 38129019 38129019 G C HLCS Missense_Mutation p.I611M 0.40 deleterious(0) probably_damaging(0.991) TCGA-IR-A3LK-01 21 38569941 38569941 G A TTC3 Missense_Mutation p.D1884N 0.40 tolerated(0.06) benign(0.111) TCGA-IR-A3LK-01 21 41032838 41032838 G A B3GALT5 Missense_Mutation p.D118N 0.36 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 21 43702483 43702483 G C ABCG1 Missense_Mutation p.E230Q 0.50 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LK-01 21 44274710 44274710 G A WDR4 Silent p.F251F 0.52 TCGA-IR-A3LK-01 21 45103223 45103223 G T RRP1B Missense_Mutation p.G287V 0.25 tolerated(0.06) benign(0.025) TCGA-IR-A3LK-01 21 45994702 45994702 G A KRTAP10-4 Missense_Mutation p.R356K 0.40 tolerated(0.39) unknown(0) TCGA-IR-A3LK-01 21 46323277 46323277 C T ITGB2 Intron 0.38 TCGA-IR-A3LK-01 21 47552126 47552126 C T COL6A2 Missense_Mutation p.T907I 0.42 tolerated(0.18) benign(0.003) TCGA-IR-A3LK-01 21 47571901 47571901 G C FTCD Intron 0.43 TCGA-IR-A3LK-01 22 18273683 18273683 C G MICAL3 Splice_Site p.X1942_splice 0.33 TCGA-IR-A3LK-01 22 18844612 18844612 G C BCRP7 Intron 0.09 TCGA-IR-A3LK-01 22 19006762 19006762 G A DGCR9 RNA 0.33 TCGA-IR-A3LK-01 22 19459236 19459236 C T UFD1L Missense_Mutation p.E89K 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-IR-A3LK-01 22 19961632 19961632 C G ARVCF Intron 0.21 TCGA-IR-A3LK-01 22 20043499 20043499 G A TANGO2 Silent p.G138G 0.30 TCGA-IR-A3LK-01 22 20079118 20079118 C G DGCR8 Silent p.L489L 0.33 TCGA-IR-A3LK-01 22 20128963 20128963 G C ZDHHC8 Missense_Mutation p.Q345H 0.28 tolerated(0.07) possibly_damaging(0.865) TCGA-IR-A3LK-01 22 20781775 20781775 C G SCARF2 Missense_Mutation p.E540Q 0.28 tolerated(0.1) probably_damaging(0.92) TCGA-IR-A3LK-01 22 21044423 21044423 C G POM121L4P RNA 0.33 TCGA-IR-A3LK-01 22 21805192 21805192 C T HIC2 3'UTR 0.45 TCGA-IR-A3LK-01 22 23063352 23063352 C G IGLV3-19 Missense_Mutation p.S20C 0.36 deleterious(0) probably_damaging(0.978) TCGA-IR-A3LK-01 22 23243464 23243464 G T IGLC2 Nonsense_Mutation p.E104* 0.42 TCGA-IR-A3LK-01 22 24468334 24468334 G C CABIN1 Missense_Mutation p.E836Q 0.42 deleterious(0.04) probably_damaging(0.993) TCGA-IR-A3LK-01 22 24509660 24509660 C T CABIN1 Silent p.L1415L 0.47 TCGA-IR-A3LK-01 22 24765209 24765209 C G SPECC1L Nonsense_Mutation p.S1003* 0.36 TCGA-IR-A3LK-01 22 28307052 28307052 C G PITPNB Missense_Mutation p.E33Q 0.44 deleterious(0.04) possibly_damaging(0.867) TCGA-IR-A3LK-01 22 28378382 28378382 G C TTC28 Missense_Mutation p.P2425A 0.47 tolerated_low_confidence(0.39) benign(0.002) TCGA-IR-A3LK-01 22 30126213 30126213 G A CABP7 3'UTR 0.43 TCGA-IR-A3LK-01 22 30819205 30819205 C T SEC14L2 3'UTR 0.39 TCGA-IR-A3LK-01 22 32554981 32554981 C G C22orf42 Missense_Mutation p.K74N 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.607) TCGA-IR-A3LK-01 22 32828450 32828450 T A BPIFC Silent p.P353P 0.49 TCGA-IR-A3LK-01 22 32909744 32909744 C G SYN3 Missense_Mutation p.D560H 0.16 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 22 36537273 36537273 C T APOL3 Missense_Mutation p.R395H 0.10 tolerated(0.38) benign(0.001) TCGA-IR-A3LK-01 22 36537912 36537912 C A APOL3 Missense_Mutation p.R182I 0.41 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LK-01 22 36705359 36705359 G A MYH9 Missense_Mutation p.S604F 0.40 possibly_damaging(0.864) TCGA-IR-A3LK-01 22 36913354 36913354 C G EIF3D Missense_Mutation p.L328F 0.37 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 22 37273686 37273686 G C NCF4 3'UTR 0.39 TCGA-IR-A3LK-01 22 37870703 37870703 G C MFNG Missense_Mutation p.F220L 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-IR-A3LK-01 22 38130433 38130433 G A TRIOBP Missense_Mutation p.E1364K 0.30 deleterious_low_confidence(0.01) benign(0.236) TCGA-IR-A3LK-01 22 39117746 39117746 G C GTPBP1 Splice_Site p.X279_splice 0.55 TCGA-IR-A3LK-01 22 39427902 39427902 C T APOBEC3D Silent p.F322F 0.39 TCGA-IR-A3LK-01 22 39441430 39441430 C G APOBEC3F Intron 0.42 TCGA-IR-A3LK-01 22 39477000 39477000 G T APOBEC3G Missense_Mutation p.R78S 0.64 tolerated(0.12) benign(0.403) TCGA-IR-A3LK-01 22 39477025 39477025 G A APOBEC3G Missense_Mutation p.E87K 0.53 tolerated(0.25) benign(0.05) TCGA-IR-A3LK-01 22 41489064 41489064 C G EP300 Nonsense_Mutation p.S19* 0.36 TCGA-IR-A3LK-01 22 41521980 41521980 C G EP300 Nonsense_Mutation p.S281* 0.43 TCGA-IR-A3LK-01 22 42387592 42387592 G C SEPT3 Missense_Mutation p.E229Q 0.37 tolerated(0.58) possibly_damaging(0.47) TCGA-IR-A3LK-01 22 44342296 44342296 C T PNPLA3 3'UTR 0.45 TCGA-IR-A3LK-01 22 45599773 45599773 G A KIAA0930 Nonsense_Mutation p.Q209* 0.30 TCGA-IR-A3LK-01 22 45929657 45929657 C T FBLN1 Silent p.I221I 0.39 TCGA-IR-A3LK-01 22 46327115 46327115 C T WNT7B Missense_Mutation p.E145K 0.42 tolerated(0.37) benign(0.031) TCGA-IR-A3LK-01 22 46656322 46656322 G C PKDREJ Silent p.L966L 0.35 TCGA-IR-A3LK-01 22 50547268 50547268 G C MOV10L1 Missense_Mutation p.K246N 0.36 tolerated(0.39) benign(0.002) TCGA-IR-A3LK-01 22 50667952 50667952 C T TUBGCP6 Missense_Mutation p.E391K 0.47 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 22 50959393 50959393 G C NCAPH2 Splice_Site p.X288_splice 0.43 TCGA-IR-A3LK-01 22 50960965 50960965 G A NCAPH2 Missense_Mutation p.E449K 0.51 tolerated(0.27) benign(0.267) TCGA-IR-A3LK-01 22 50960969 50960969 G A NCAPH2 Missense_Mutation p.G450E 0.53 tolerated(1) benign(0.012) TCGA-IR-A3LK-01 22 50986892 50986892 G C KLHDC7B Silent p.A99A 0.41 TCGA-IR-A3LK-01 22 51123010 51123010 C T SHANK3 Intron 0.33 TCGA-IR-A3LK-01 2 100915746 100915746 C T LONRF2 Missense_Mutation p.E435K 0.31 tolerated(0.85) benign(0.002) TCGA-IR-A3LK-01 2 101010046 101010046 G A CHST10 Silent p.L244L 0.25 TCGA-IR-A3LK-01 2 103299770 103299770 C T SLC9A2 Missense_Mutation p.S352F 0.29 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 2 103318928 103318928 C G SLC9A2 Silent p.L604L 0.44 TCGA-IR-A3LK-01 2 105484677 105484677 G A LINC01159 RNA 0.33 TCGA-IR-A3LK-01 2 105882079 105882079 G A TGFBRAP1 3'UTR 0.38 TCGA-IR-A3LK-01 2 10815997 10815997 C T NOL10 Missense_Mutation p.G71E 0.14 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 2 110922134 110922134 C G NPHP1 Missense_Mutation p.R301T 0.45 tolerated(0.34) benign(0.002) TCGA-IR-A3LK-01 2 113089379 113089379 G A ZC3H6 Missense_Mutation p.D962N 0.47 deleterious(0.02) benign(0.059) TCGA-IR-A3LK-01 2 11356289 11356289 C G ROCK2 Missense_Mutation p.E486Q 0.41 tolerated(0.19) possibly_damaging(0.868) TCGA-IR-A3LK-01 2 121749179 121749179 C G GLI2 3'UTR 0.38 TCGA-IR-A3LK-01 2 122007206 122007206 G A TFCP2L1 Nonsense_Mutation p.R78* 0.39 TCGA-IR-A3LK-01 2 122363302 122363302 G A CLASP1 Missense_Mutation p.S57F 0.41 tolerated(0.07) benign(0.005) TCGA-IR-A3LK-01 2 130807424 130807424 C G CYP4F27P 5'Flank 0.38 TCGA-IR-A3LK-01 2 130910714 130910714 C A SMPD4 Nonsense_Mutation p.E725* 0.38 TCGA-IR-A3LK-01 2 131522620 131522620 G C AMER3 3'UTR 0.48 TCGA-IR-A3LK-01 2 131674361 131674361 C T ARHGEF4 5'UTR 0.47 TCGA-IR-A3LK-01 2 138375966 138375966 G A THSD7B Nonsense_Mutation p.W1193* 0.40 TCGA-IR-A3LK-01 2 141093358 141093358 C T LRP1B Missense_Mutation p.G3981E 0.32 probably_damaging(0.931) TCGA-IR-A3LK-01 2 149447933 149447933 C G EPC2 Missense_Mutation p.H102D 0.30 deleterious(0) possibly_damaging(0.874) TCGA-IR-A3LK-01 2 152374864 152374864 G T NEB Missense_Mutation p.H7590N 0.32 probably_damaging(0.998) TCGA-IR-A3LK-01 2 152473963 152473963 C G NEB Missense_Mutation p.W3699S 0.41 probably_damaging(1) TCGA-IR-A3LK-01 2 152492755 152492755 C T NEB Missense_Mutation p.D3030N 0.45 benign(0.129) TCGA-IR-A3LK-01 2 152698533 152698533 C G CACNB4 Missense_Mutation p.E396Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 2 15769775 15769775 G A DDX1 Missense_Mutation p.R642K 0.36 tolerated(0.82) benign(0.003) TCGA-IR-A3LK-01 2 160086342 160086342 G C TANC1 Missense_Mutation p.E1469Q 0.47 tolerated_low_confidence(0.11) possibly_damaging(0.501) TCGA-IR-A3LK-01 2 160287406 160287406 G C BAZ2B Missense_Mutation p.S721C 0.36 benign(0.233) TCGA-IR-A3LK-01 2 160755557 160755557 G A LY75-CD302 Silent p.F36F 0.28 TCGA-IR-A3LK-01 2 162833298 162833298 G C SLC4A10 Missense_Mutation p.D1086H 0.41 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 2 165349469 165349469 C T GRB14 3'UTR 0.36 TCGA-IR-A3LK-01 2 165984182 165984182 C T SCN3A Missense_Mutation p.E1118K 0.34 deleterious(0.05) probably_damaging(0.997) TCGA-IR-A3LK-01 2 166248756 166248756 G T SCN2A 3'UTR 0.45 TCGA-IR-A3LK-01 2 167319025 167319025 T A SCN7A Silent p.G319G 0.38 TCGA-IR-A3LK-01 2 169801175 169801175 G A ABCB11 Silent p.L850L 0.38 TCGA-IR-A3LK-01 2 170022556 170022556 G A LRP2 Missense_Mutation p.P3882S 0.38 benign(0.034) TCGA-IR-A3LK-01 2 170029697 170029697 G A LRP2 Silent p.F3684F 0.39 TCGA-IR-A3LK-01 2 172017013 172017013 C G TLK1 5'UTR 0.40 TCGA-IR-A3LK-01 2 172378866 172378866 G C CYBRD1 5'UTR 0.32 TCGA-IR-A3LK-01 2 172585296 172585296 G A DYNC1I2 Missense_Mutation p.D443N 0.37 tolerated(0.08) benign(0.302) TCGA-IR-A3LK-01 2 173451105 173451105 G A PDK1 Missense_Mutation p.A349T 0.54 tolerated(0.46) benign(0.439) TCGA-IR-A3LK-01 2 175311387 175311387 C T GPR155 Silent p.L655L 0.39 TCGA-IR-A3LK-01 2 179426582 179426582 C T TTN Missense_Mutation p.E28093K 0.30 TCGA-IR-A3LK-01 2 179429007 179429007 G C TTN Silent p.V27284V 0.34 TCGA-IR-A3LK-01 2 179452710 179452710 C G TTN Missense_Mutation p.E21142Q 0.48 TCGA-IR-A3LK-01 2 179486048 179486048 C G TTN Missense_Mutation p.E15133Q 0.32 TCGA-IR-A3LK-01 2 179589076 179589076 G C TTN Nonsense_Mutation p.S7009* 0.29 TCGA-IR-A3LK-01 2 179611025 179611025 C G TTN Intron 0.33 TCGA-IR-A3LK-01 2 179616464 179616464 C G TTN Intron 0.36 TCGA-IR-A3LK-01 2 179638336 179638336 C T TTN Missense_Mutation p.E2483K 0.37 TCGA-IR-A3LK-01 2 179641319 179641319 C G TTN Missense_Mutation p.G1758R 0.37 TCGA-IR-A3LK-01 2 183099171 183099171 G A PDE1A Silent p.I151I 0.43 TCGA-IR-A3LK-01 2 189904060 189904060 G A COL5A2 Missense_Mutation p.S1288L 0.49 unknown(0) TCGA-IR-A3LK-01 2 191556994 191556994 G C NAB1 3'UTR 0.34 TCGA-IR-A3LK-01 2 196642531 196642531 G C DNAH7 Missense_Mutation p.S3686C 0.54 tolerated(0.07) possibly_damaging(0.489) TCGA-IR-A3LK-01 2 196753533 196753533 G A DNAH7 Missense_Mutation p.S1740F 0.18 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 2 197750186 197750186 C T PGAP1 Missense_Mutation p.D412N 0.25 deleterious(0.04) probably_damaging(1) TCGA-IR-A3LK-01 2 20114024 20114024 C G WDR35 Missense_Mutation p.D1057H 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LK-01 2 201438500 201438500 C T SGOL2 Missense_Mutation p.S1144L 0.28 tolerated(0.09) benign(0.176) TCGA-IR-A3LK-01 2 20174334 20174334 G A WDR35 Missense_Mutation p.H211Y 0.24 deleterious(0.04) benign(0.085) TCGA-IR-A3LK-01 2 20205975 20205975 G C MATN3 Missense_Mutation p.S107C 0.24 tolerated(0.09) probably_damaging(0.975) TCGA-IR-A3LK-01 2 202264129 202264129 C G TRAK2 Missense_Mutation p.E151Q 0.75 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 2 20402528 20402528 C T SDC1 Silent p.%3D 0.28 TCGA-IR-A3LK-01 2 207424741 207424741 G A ADAM23 Silent p.K356K 0.64 TCGA-IR-A3LK-01 2 21229833 21229833 C T APOB Missense_Mutation p.E3303K 0.41 benign(0.02) TCGA-IR-A3LK-01 2 21247862 21247862 C T APOB Silent p.Q793Q 0.31 TCGA-IR-A3LK-01 2 219393450 219393450 C G USP37 Intron 0.69 TCGA-IR-A3LK-01 2 219445325 219445325 C G RQCD1 Missense_Mutation p.I22M 0.83 tolerated(0.18) benign(0.073) TCGA-IR-A3LK-01 2 219566786 219566786 C G STK36 3'UTR 0.82 TCGA-IR-A3LK-01 2 220408981 220408981 C G TMEM198 5'UTR 0.53 TCGA-IR-A3LK-01 2 225635056 225635056 C A DOCK10 Missense_Mutation p.D2106Y 0.66 tolerated(0.06) probably_damaging(0.981) TCGA-IR-A3LK-01 2 231174752 231174752 G A SP140 Silent p.E724E 0.80 TCGA-IR-A3LK-01 2 232574787 232574787 G A PTMA Intron 0.79 TCGA-IR-A3LK-01 2 233748711 233748711 C T NGEF Silent p.V527V 0.65 TCGA-IR-A3LK-01 2 234378148 234378148 G A DGKD 3'UTR 0.75 TCGA-IR-A3LK-01 2 234669586 234669586 C T UGT1A8 Intron 0.58 TCGA-IR-A3LK-01 2 24345292 24345292 G A PFN4 Silent p.F38F 0.43 TCGA-IR-A3LK-01 2 24439053 24439053 C T ITSN2 Silent p.Q1285Q 0.31 TCGA-IR-A3LK-01 2 25179980 25179980 C T DNAJC27 Missense_Mutation p.E154K 0.39 tolerated(0.17) benign(0.141) TCGA-IR-A3LK-01 2 25705727 25705727 C T DTNB Silent p.L339L 0.50 TCGA-IR-A3LK-01 2 26410287 26410287 G A GAREML Missense_Mutation p.A596T 0.36 tolerated(0.95) benign(0.001) TCGA-IR-A3LK-01 2 26410897 26410897 C T GAREML Missense_Mutation p.S799F 0.43 deleterious(0.02) benign(0.285) TCGA-IR-A3LK-01 2 26691336 26691336 G A OTOF Nonsense_Mutation p.R1344* 0.37 TCGA-IR-A3LK-01 2 26863418 26863418 G A CIB4 Silent p.T24T 0.35 TCGA-IR-A3LK-01 2 27322670 27322670 C T CGREF1 3'Flank 0.59 TCGA-IR-A3LK-01 2 27746301 27746301 C T GCKR Nonsense_Mutation p.Q625* 0.46 TCGA-IR-A3LK-01 2 27801949 27801949 C T C2orf16 Missense_Mutation p.S837L 0.34 deleterious(0) possibly_damaging(0.642) TCGA-IR-A3LK-01 2 27804010 27804010 G C C2orf16 Missense_Mutation p.R1524T 0.36 deleterious(0.02) unknown(0) TCGA-IR-A3LK-01 2 30976051 30976051 C G CAPN13 Missense_Mutation p.D319H 0.49 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LK-01 2 31489610 31489610 G A EHD3 3'UTR 0.52 TCGA-IR-A3LK-01 2 32254698 32254698 G C DPY30 Missense_Mutation p.I64M 0.32 deleterious(0) probably_damaging(0.949) TCGA-IR-A3LK-01 2 33810301 33810301 C T FAM98A Missense_Mutation p.D367N 0.40 tolerated(0.32) unknown(0) TCGA-IR-A3LK-01 2 38523698 38523698 C G ATL2 Intron 0.38 TCGA-IR-A3LK-01 2 39945076 39945076 C G TMEM178A 3'UTR 0.45 TCGA-IR-A3LK-01 2 42490404 42490404 C G EML4 Nonsense_Mutation p.S200* 0.33 TCGA-IR-A3LK-01 2 44104968 44104968 C T ABCG8 Silent p.I646I 0.37 TCGA-IR-A3LK-01 2 47044026 47044026 G A LINC01119 Silent p.V21V 0.51 TCGA-IR-A3LK-01 2 47301418 47301418 C G TTC7A 3'UTR 0.35 TCGA-IR-A3LK-01 2 50847273 50847273 C G NRXN1 Missense_Mutation p.E443Q 0.55 deleterious(0.03) benign(0.403) TCGA-IR-A3LK-01 2 55253525 55253525 C G RTN4 Missense_Mutation p.K570N 0.30 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LK-01 2 55517340 55517340 C A CCDC88A 3'UTR 0.40 TCGA-IR-A3LK-01 2 61018955 61018955 C G PAPOLG Missense_Mutation p.H486D 0.38 deleterious(0) probably_damaging(0.92) TCGA-IR-A3LK-01 2 61169299 61169299 G C PUS10 3'UTR 0.46 TCGA-IR-A3LK-01 2 73453341 73453341 C T SMYD5 3'UTR 0.48 TCGA-IR-A3LK-01 2 74177749 74177749 C G DGUOK Missense_Mutation p.L161V 0.48 deleterious(0.02) possibly_damaging(0.66) TCGA-IR-A3LK-01 2 74274014 74274014 C T TET3 Missense_Mutation p.L189F 0.31 tolerated(0.53) possibly_damaging(0.502) TCGA-IR-A3LK-01 2 74320052 74320052 C A TET3 Missense_Mutation p.F886L 0.46 tolerated(0.25) benign(0.429) TCGA-IR-A3LK-01 2 74486733 74486733 G A SLC4A5 Silent p.L283L 0.35 TCGA-IR-A3LK-01 2 74642549 74642549 G A C2orf81 Missense_Mutation p.S225L 0.25 tolerated(0.63) benign(0.006) TCGA-IR-A3LK-01 2 74686223 74686223 C G WBP1 Intron 0.54 TCGA-IR-A3LK-01 2 75196616 75196616 C T POLE4 3'UTR 0.35 TCGA-IR-A3LK-01 2 79348786 79348786 G A REG1A Missense_Mutation p.E55K 0.39 tolerated(1) possibly_damaging(0.57) TCGA-IR-A3LK-01 2 84774646 84774646 G A DNAH6 Missense_Mutation p.E366K 0.44 tolerated(0.9) benign(0.002) TCGA-IR-A3LK-01 2 84936590 84936590 C T DNAH6 Missense_Mutation p.R3058C 0.39 deleterious(0) probably_damaging(0.973) TCGA-IR-A3LK-01 2 86444209 86444209 G C REEP1 3'UTR 0.46 TCGA-IR-A3LK-01 2 88747930 88747930 G C FOXI3 RNA 0.40 TCGA-IR-A3LK-01 2 96781784 96781784 C T ADRA2B Silent p.L35L 0.45 TCGA-IR-A3LK-01 2 98317652 98317652 C T LINC01125 RNA 0.42 TCGA-IR-A3LK-01 2 98426211 98426211 C T TMEM131 Silent p.V665V 0.43 TCGA-IR-A3LK-01 2 99220620 99220620 C T COA5 Missense_Mutation p.G45E 0.33 tolerated(0.24) benign(0.135) TCGA-IR-A3LK-01 3 10074515 10074515 G C FANCD2 Splice_Site p.X22_splice 0.41 TCGA-IR-A3LK-01 3 101374961 101374961 C G ZBTB11 Missense_Mutation p.M726I 0.38 tolerated(0.14) benign(0.006) TCGA-IR-A3LK-01 3 101540843 101540843 C A NXPE3 3'UTR 0.47 TCGA-IR-A3LK-01 3 10384561 10384561 G A ATP2B2 Missense_Mutation p.T931M 0.39 deleterious(0) probably_damaging(0.94) TCGA-IR-A3LK-01 3 110912071 110912071 G A PVRL3 Missense_Mutation p.D437N 0.40 tolerated_low_confidence(0.24) benign(0.003) TCGA-IR-A3LK-01 3 113388987 113388987 C G KIAA2018 Missense_Mutation p.C47S 0.42 probably_damaging(0.999) TCGA-IR-A3LK-01 3 11888172 11888172 G C TAMM41 5'UTR 0.43 TCGA-IR-A3LK-01 3 119886581 119886581 G A GPR156 Silent p.F581F 0.42 TCGA-IR-A3LK-01 3 122991500 122991500 C G SEC22A 3'UTR 0.18 TCGA-IR-A3LK-01 3 122991731 122991731 C A SEC22A 3'UTR 0.28 TCGA-IR-A3LK-01 3 123008634 123008634 G C ADCY5 Missense_Mutation p.I1165M 0.33 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LK-01 3 124418804 124418804 C T AC080008.1 5'Flank 0.38 TCGA-IR-A3LK-01 3 124731882 124731882 C T HEG1 Silent p.L847L 0.38 TCGA-IR-A3LK-01 3 125702118 125702118 C G ROPN1B Missense_Mutation p.I198M 0.42 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 3 125836938 125836938 G C ALDH1L1 Missense_Mutation p.S641C 0.35 deleterious(0.01) benign(0.372) TCGA-IR-A3LK-01 3 127703061 127703061 G A KBTBD12 Missense_Mutation p.M604I 0.38 deleterious(0.01) benign(0.013) TCGA-IR-A3LK-01 3 128516831 128516831 C G RAB7A Missense_Mutation p.F33L 0.44 deleterious(0) probably_damaging(0.949) TCGA-IR-A3LK-01 3 128780619 128780619 A G GP9 Missense_Mutation p.T13A 0.29 tolerated(0.81) benign(0) TCGA-IR-A3LK-01 3 128809354 128809354 G C RAB43 3'UTR 0.48 TCGA-IR-A3LK-01 3 130124985 130124985 G C COL6A5 Missense_Mutation p.G1464A 0.43 deleterious(0.02) probably_damaging(0.922) TCGA-IR-A3LK-01 3 131100998 131100998 G C NUDT16 Missense_Mutation p.E83Q 0.32 tolerated_low_confidence(0.24) possibly_damaging(0.874) TCGA-IR-A3LK-01 3 132172523 132172523 G A DNAJC13 Silent p.L275L 0.39 TCGA-IR-A3LK-01 3 132294659 132294659 C T ACAD11 Missense_Mutation p.R653Q 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-IR-A3LK-01 3 133342989 133342989 G T TOPBP1 Missense_Mutation p.F945L 0.49 tolerated(0.11) possibly_damaging(0.517) TCGA-IR-A3LK-01 3 133661572 133661572 G T SLCO2A1 Nonsense_Mutation p.S501* 0.45 TCGA-IR-A3LK-01 3 133664099 133664099 G C SLCO2A1 Nonsense_Mutation p.S434* 0.32 TCGA-IR-A3LK-01 3 13545614 13545614 G A HDAC11 Missense_Mutation p.E224K 0.54 deleterious(0.03) possibly_damaging(0.597) TCGA-IR-A3LK-01 3 140419909 140419909 C T TRIM42 3'UTR 0.39 TCGA-IR-A3LK-01 3 147106079 147106079 C T ZIC4 3'UTR 0.33 TCGA-IR-A3LK-01 3 147121823 147121823 C T ZIC4 Silent p.R21R 0.49 TCGA-IR-A3LK-01 3 14813664 14813664 C T C3orf20 Silent p.A862A 0.42 TCGA-IR-A3LK-01 3 150916599 150916599 G A GPR171 Missense_Mutation p.S192L 0.35 tolerated(0.11) probably_damaging(1) TCGA-IR-A3LK-01 3 151161083 151161083 C T IGSF10 Silent p.V1884V 0.39 TCGA-IR-A3LK-01 3 151163396 151163396 C G IGSF10 Missense_Mutation p.R1458T 0.42 tolerated(0.42) benign(0.003) TCGA-IR-A3LK-01 3 151501814 151501814 C T RP11-454C18.2 Intron 0.35 TCGA-IR-A3LK-01 3 152881363 152881363 C T RAP2B 3'UTR 0.37 TCGA-IR-A3LK-01 3 15311349 15311349 G T SH3BP5 Missense_Mutation p.F122L 0.53 deleterious(0) probably_damaging(0.941) TCGA-IR-A3LK-01 3 156544666 156544666 G A LEKR1 5'UTR 0.34 TCGA-IR-A3LK-01 3 15727769 15727769 C G ANKRD28 Missense_Mutation p.E641Q 0.43 tolerated(0.25) benign(0.033) TCGA-IR-A3LK-01 3 160156451 160156451 G A TRIM59 Missense_Mutation p.S174F 0.39 deleterious(0.03) benign(0.09) TCGA-IR-A3LK-01 3 164700155 164700155 T A SI Missense_Mutation p.K1764I 0.31 tolerated(0.19) benign(0.011) TCGA-IR-A3LK-01 3 166958617 166958617 T A ZBBX Missense_Mutation p.Q828H 0.40 deleterious(0.03) benign(0.178) TCGA-IR-A3LK-01 3 172016570 172016570 C T FNDC3B Missense_Mutation p.H352Y 0.31 deleterious(0.04) benign(0.039) TCGA-IR-A3LK-01 3 172165378 172165378 G C GHSR Intron 0.28 TCGA-IR-A3LK-01 3 174000815 174000815 G C NLGN1 3'UTR 0.43 TCGA-IR-A3LK-01 3 178916836 178916836 C G PIK3CA Missense_Mutation p.Q75E 0.29 deleterious(0.01) possibly_damaging(0.872) TCGA-IR-A3LK-01 3 179051197 179051197 G A ZNF639 Missense_Mutation p.E149K 0.37 tolerated(0.05) benign(0.339) TCGA-IR-A3LK-01 3 179305797 179305797 G C ACTL6A Nonstop_Mutation p.*430Sext*54 0.39 TCGA-IR-A3LK-01 3 179618463 179618463 C A PEX5L Intron 0.10 TCGA-IR-A3LK-01 3 181430398 181430398 G T SOX2 Nonsense_Mutation p.E84* 0.35 TCGA-IR-A3LK-01 3 183777613 183777613 C G HTR3C Intron 0.43 TCGA-IR-A3LK-01 3 183898925 183898925 G C AP2M1 Silent p.L206L 0.30 TCGA-IR-A3LK-01 3 183898974 183898974 G A AP2M1 Missense_Mutation p.E223K 0.29 deleterious(0.02) benign(0.01) TCGA-IR-A3LK-01 3 184090124 184090124 G A THPO 3'UTR 0.41 TCGA-IR-A3LK-01 3 184971748 184971748 G A EHHADH Silent p.V21V 0.54 TCGA-IR-A3LK-01 3 185348582 185348582 C T SENP2 3'UTR 0.44 TCGA-IR-A3LK-01 3 185865087 185865087 T A DGKG 3'UTR 0.30 TCGA-IR-A3LK-01 3 186965056 186965056 C G MASP1 Intron 0.37 TCGA-IR-A3LK-01 3 191888293 191888293 C T FGF12 Silent p.V189V 0.44 TCGA-IR-A3LK-01 3 195508828 195508828 G A MUC4 Missense_Mutation p.S3208L 0.31 benign(0.025) TCGA-IR-A3LK-01 3 195509644 195509644 G A MUC4 Missense_Mutation p.S2936L 0.27 benign(0.044) TCGA-IR-A3LK-01 3 195511010 195511010 G A MUC4 Missense_Mutation p.L2481F 0.22 unknown(0) TCGA-IR-A3LK-01 3 195511375 195511375 G A MUC4 Missense_Mutation p.S2359F 0.16 unknown(0) TCGA-IR-A3LK-01 3 195511420 195511420 G C MUC4 Nonsense_Mutation p.S2344* 0.22 TCGA-IR-A3LK-01 3 195512126 195512126 G A MUC4 Missense_Mutation p.H2109Y 0.18 unknown(0) TCGA-IR-A3LK-01 3 195512719 195512719 G A MUC4 Missense_Mutation p.S1911F 0.18 unknown(0) TCGA-IR-A3LK-01 3 195516941 195516941 C G MUC4 Missense_Mutation p.E504Q 0.44 unknown(0) TCGA-IR-A3LK-01 3 195517883 195517883 C G MUC4 Missense_Mutation p.D190H 0.40 unknown(0) TCGA-IR-A3LK-01 3 196051385 196051385 G A TM4SF19 Intron 0.29 TCGA-IR-A3LK-01 3 197762815 197762815 G A LMLN Missense_Mutation p.D627N 0.35 tolerated(0.62) benign(0.002) TCGA-IR-A3LK-01 3 24001171 24001171 C T NR1D2 Missense_Mutation p.R128W 0.35 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 3 28364321 28364321 G C CMC1 3'UTR 0.29 TCGA-IR-A3LK-01 3 28380088 28380088 C T AZI2 Missense_Mutation p.E79K 0.40 deleterious(0.01) benign(0.134) TCGA-IR-A3LK-01 3 3095557 3095557 C T CNTN4 Missense_Mutation p.L960F 0.31 deleterious(0.01) benign(0.001) TCGA-IR-A3LK-01 3 37094568 37094568 C T LRRFIP2 3'UTR 0.54 TCGA-IR-A3LK-01 3 37565067 37565067 C T ITGA9 Missense_Mutation p.S431L 0.39 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 3 38539157 38539157 C T EXOG Silent p.F67F 0.37 TCGA-IR-A3LK-01 3 39374924 39374924 C A CCR8 3'UTR 0.40 TCGA-IR-A3LK-01 3 39433016 39433016 C G SLC25A38 Missense_Mutation p.P121A 0.55 deleterious(0.05) probably_damaging(0.951) TCGA-IR-A3LK-01 3 40286041 40286041 G A MYRIP Silent p.A735A 0.38 TCGA-IR-A3LK-01 3 40351430 40351430 C G EIF1B 5'UTR 0.43 TCGA-IR-A3LK-01 3 40523818 40523818 G A ZNF619 Silent p.L92L 0.44 TCGA-IR-A3LK-01 3 42678943 42678943 G A NKTR Missense_Mutation p.E583K 0.40 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-IR-A3LK-01 3 42791400 42791400 G C CCDC13 Intron 0.27 TCGA-IR-A3LK-01 3 43122824 43122824 C T POMGNT2 Missense_Mutation p.E34K 0.34 deleterious_low_confidence(0.01) benign(0.197) TCGA-IR-A3LK-01 3 44893412 44893412 G A KIF15 Missense_Mutation p.E1314K 0.38 deleterious(0.05) probably_damaging(0.993) TCGA-IR-A3LK-01 3 44893430 44893430 G C KIF15 Missense_Mutation p.E1320Q 0.43 tolerated(0.07) possibly_damaging(0.791) TCGA-IR-A3LK-01 3 46008585 46008585 G C FYCO1 Silent p.L747L 0.40 TCGA-IR-A3LK-01 3 46415353 46415353 C T CCR5 Silent p.F320F 0.26 TCGA-IR-A3LK-01 3 46450134 46450134 C G CCRL2 Missense_Mutation p.F200L 0.49 tolerated(0.11) benign(0.2) TCGA-IR-A3LK-01 3 46940273 46940273 G C PTH1R Missense_Mutation p.E254Q 0.50 tolerated(0.33) possibly_damaging(0.868) TCGA-IR-A3LK-01 3 47451199 47451199 G A PTPN23 Silent p.L668L 0.35 TCGA-IR-A3LK-01 3 48465445 48465445 G A PLXNB1 Silent p.P192P 0.32 TCGA-IR-A3LK-01 3 48509961 48509961 C G SHISA5 3'UTR 0.50 TCGA-IR-A3LK-01 3 48622354 48622354 G A COL7A1 Missense_Mutation p.R1334C 0.32 unknown(0) TCGA-IR-A3LK-01 3 48681729 48681729 C G CELSR3 Splice_Site p.X2696_splice 0.30 TCGA-IR-A3LK-01 3 48701492 48701492 C T CELSR3 5'Flank 0.34 TCGA-IR-A3LK-01 3 48936280 48936280 C G SLC25A20 5'UTR 0.37 TCGA-IR-A3LK-01 3 49051433 49051433 C T WDR6 Silent p.P852P 0.37 TCGA-IR-A3LK-01 3 49321551 49321551 C G USP4 Missense_Mutation p.K803N 0.35 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 3 50368087 50368087 G A RASSF1 Silent p.L320L 0.39 TCGA-IR-A3LK-01 3 50402378 50402378 G A CACNA2D2 Silent p.L1085L 0.38 TCGA-IR-A3LK-01 3 51251581 51251581 T C DOCK3 Silent p.R385R 0.34 TCGA-IR-A3LK-01 3 52255789 52255789 T A TLR9 Missense_Mutation p.H1002L 0.35 deleterious(0) benign(0.246) TCGA-IR-A3LK-01 3 52384529 52384529 G T DNAH1 Silent p.R884R 0.38 TCGA-IR-A3LK-01 3 52398849 52398849 G A DNAH1 Missense_Mutation p.E1778K 0.25 possibly_damaging(0.558) TCGA-IR-A3LK-01 3 53845877 53845877 C A CACNA1D 3'UTR 0.38 TCGA-IR-A3LK-01 3 56656784 56656784 C G FAM208A 3'UTR 0.31 TCGA-IR-A3LK-01 3 56787552 56787552 C T ARHGEF3 Missense_Mutation p.D172N 0.30 deleterious(0) probably_damaging(0.955) TCGA-IR-A3LK-01 3 56787559 56787559 C G ARHGEF3 Missense_Mutation p.L169F 0.31 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 3 57528442 57528442 T C DNAH12 Silent p.K52K 0.46 TCGA-IR-A3LK-01 3 57557144 57557144 G A ARF4 3'UTR 0.10 TCGA-IR-A3LK-01 3 58109341 58109341 C T FLNB Silent p.F1216F 0.37 TCGA-IR-A3LK-01 3 58552947 58552947 C G FAM107A Missense_Mutation p.Q105H 0.47 deleterious(0) probably_damaging(0.992) TCGA-IR-A3LK-01 3 58619970 58619970 C T FAM3D 3'UTR 0.41 TCGA-IR-A3LK-01 3 58852388 58852388 C G C3orf67 Missense_Mutation p.E263Q 0.43 tolerated(0.17) possibly_damaging(0.786) TCGA-IR-A3LK-01 3 62499355 62499355 G T CADPS Intron 0.69 TCGA-IR-A3LK-01 3 71037200 71037200 G A FOXP1 Missense_Mutation p.A366V 0.59 deleterious(0.02) possibly_damaging(0.824) TCGA-IR-A3LK-01 3 87017951 87017951 G A VGLL3 Silent p.H242H 0.43 TCGA-IR-A3LK-01 3 93646133 93646133 T C PROS1 Silent p.K65K 0.44 TCGA-IR-A3LK-01 3 93813021 93813021 G C NSUN3 Missense_Mutation p.L168F 0.28 tolerated(0.71) benign(0.023) TCGA-IR-A3LK-01 4 100821882 100821882 G A DNAJB14 3'UTR 0.28 TCGA-IR-A3LK-01 4 101344472 101344472 G A EMCN Nonsense_Mutation p.Q169* 0.42 TCGA-IR-A3LK-01 4 101439198 101439198 C A EMCN 5'UTR 0.44 TCGA-IR-A3LK-01 4 102014971 102014971 G A PPP3CA Silent p.F248F 0.36 TCGA-IR-A3LK-01 4 113356438 113356438 C G ALPK1 Missense_Mutation p.Q1057E 0.42 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 4 114280354 114280354 C T ANK2 Missense_Mutation p.S3527L 0.49 benign(0.015) TCGA-IR-A3LK-01 4 120192585 120192585 C T USP53 Nonsense_Mutation p.Q524* 0.16 TCGA-IR-A3LK-01 4 120415655 120415655 C G PDE5A 3'UTR 0.42 TCGA-IR-A3LK-01 4 123140590 123140590 G C KIAA1109 Missense_Mutation p.W781C 0.35 probably_damaging(0.998) TCGA-IR-A3LK-01 4 123868526 123868526 C T SPATA5 Missense_Mutation p.L533F 0.36 deleterious(0.02) possibly_damaging(0.466) TCGA-IR-A3LK-01 4 128806882 128806882 G C PLK4 Missense_Mutation p.Q119H 0.49 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 4 13462410 13462410 C G RAB28 Missense_Mutation p.E102Q 0.46 tolerated(0.21) benign(0.141) TCGA-IR-A3LK-01 4 146055462 146055462 C G OTUD4 3'UTR 0.44 TCGA-IR-A3LK-01 4 146055753 146055753 C G OTUD4 3'UTR 0.33 TCGA-IR-A3LK-01 4 151500299 151500299 C G LRBA Intron 0.59 TCGA-IR-A3LK-01 4 151829834 151829834 G T LRBA Nonsense_Mutation p.S446* 0.29 TCGA-IR-A3LK-01 4 151829838 151829838 G A LRBA Missense_Mutation p.H445Y 0.29 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LK-01 4 15443963 15443963 G C C1QTNF7 Missense_Mutation p.G144A 0.50 deleterious(0.02) probably_damaging(1) TCGA-IR-A3LK-01 4 155505365 155505365 C G FGA Missense_Mutation p.E838Q 0.28 deleterious(0) probably_damaging(0.975) TCGA-IR-A3LK-01 4 156632396 156632396 C G GUCY1A3 Missense_Mutation p.S360C 0.38 tolerated(0.06) benign(0.012) TCGA-IR-A3LK-01 4 159789475 159789475 G C FNIP2 Missense_Mutation p.E563Q 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-IR-A3LK-01 4 164272147 164272147 G A NPY5R Missense_Mutation p.G241E 0.20 tolerated(0.75) benign(0.342) TCGA-IR-A3LK-01 4 164393645 164393645 G A TKTL2 Silent p.I414I 0.44 TCGA-IR-A3LK-01 4 169169377 169169377 G C DDX60 Missense_Mutation p.Q1309E 0.40 tolerated(0.73) benign(0.313) TCGA-IR-A3LK-01 4 169197246 169197246 C G DDX60 Missense_Mutation p.E689Q 0.45 deleterious(0.04) possibly_damaging(0.641) TCGA-IR-A3LK-01 4 174242730 174242730 G A GALNT7 Splice_Site p.X613_splice 0.23 TCGA-IR-A3LK-01 4 174254097 174254097 C T HMGB2 Missense_Mutation p.E116K 0.42 tolerated(0.07) benign(0.344) TCGA-IR-A3LK-01 4 174447719 174447719 C T HAND2 3'UTR 0.24 TCGA-IR-A3LK-01 4 1803224 1803224 C T FGFR3 Silent p.G192G 0.50 TCGA-IR-A3LK-01 4 184931890 184931890 G A STOX2 Silent p.V633V 0.32 TCGA-IR-A3LK-01 4 185012089 185012089 G C ENPP6 3'UTR 0.24 TCGA-IR-A3LK-01 4 186083910 186083910 C T KIAA1430 3'UTR 0.48 TCGA-IR-A3LK-01 4 186284652 186284652 G A SNX25 3'UTR 0.40 TCGA-IR-A3LK-01 4 1902844 1902844 G C WHSC1 Missense_Mutation p.E155Q 0.26 tolerated(0.22) possibly_damaging(0.864) TCGA-IR-A3LK-01 4 20270444 20270444 G A SLIT2 Missense_Mutation p.R112K 0.37 tolerated(0.45) benign(0.004) TCGA-IR-A3LK-01 4 23795016 23795016 G A PPARGC1A 3'UTR 0.33 TCGA-IR-A3LK-01 4 24585975 24585975 G C DHX15 Silent p.P14P 0.40 TCGA-IR-A3LK-01 4 25930793 25930793 G C SMIM20 Missense_Mutation p.D62H 0.38 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 4 2701666 2701666 C A FAM193A Missense_Mutation p.S965Y 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-IR-A3LK-01 4 2831797 2831797 G A SH3BP2 Silent p.L445L 0.46 TCGA-IR-A3LK-01 4 2886370 2886370 C T ADD1 Nonsense_Mutation p.Q163* 0.34 TCGA-IR-A3LK-01 4 2990493 2990493 G A GRK4 Missense_Mutation p.G63E 0.41 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LK-01 4 3451045 3451045 G A HGFAC Missense_Mutation p.G623R 0.37 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 4 40122816 40122816 G C N4BP2 Missense_Mutation p.E1029Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 4 40124802 40124802 G C N4BP2 Silent p.V1418V 0.43 TCGA-IR-A3LK-01 4 46263983 46263983 C G GABRA2 Missense_Mutation p.R340T 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-IR-A3LK-01 4 47538781 47538781 G A ATP10D Missense_Mutation p.D408N 0.50 deleterious(0) possibly_damaging(0.786) TCGA-IR-A3LK-01 4 48036978 48036978 C T NIPAL1 Missense_Mutation p.S181L 0.28 deleterious(0) probably_damaging(0.92) TCGA-IR-A3LK-01 4 57237772 57237772 G C AASDH Missense_Mutation p.L236V 0.47 tolerated(0.08) possibly_damaging(0.644) TCGA-IR-A3LK-01 4 57368127 57368127 C T SRP72 3'UTR 0.35 TCGA-IR-A3LK-01 4 5758045 5758045 G C EVC Missense_Mutation p.E507Q 0.36 tolerated(0.1) benign(0.14) TCGA-IR-A3LK-01 4 6087285 6087285 C T JAKMIP1 Silent p.Q232Q 0.42 TCGA-IR-A3LK-01 4 62452984 62452984 G C LPHN3 Missense_Mutation p.R32T 0.40 deleterious(0.03) probably_damaging(0.991) TCGA-IR-A3LK-01 4 62812737 62812737 C A LPHN3 Missense_Mutation p.S774Y 0.41 deleterious(0.01) probably_damaging(0.974) TCGA-IR-A3LK-01 4 6594996 6594996 C T MAN2B2 Silent p.I259I 0.50 TCGA-IR-A3LK-01 4 6611729 6611729 G C MAN2B2 Missense_Mutation p.Q737H 0.43 deleterious(0) probably_damaging(0.982) TCGA-IR-A3LK-01 4 6718853 6718853 C T BLOC1S4 3'UTR 0.33 TCGA-IR-A3LK-01 4 6925609 6925609 G A TBC1D14 Missense_Mutation p.E165K 0.42 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-IR-A3LK-01 4 7043387 7043387 C A CCDC96 Nonsense_Mutation p.E427* 0.45 TCGA-IR-A3LK-01 4 7043392 7043392 C T CCDC96 Missense_Mutation p.R425Q 0.48 deleterious(0) probably_damaging(0.985) TCGA-IR-A3LK-01 4 7043586 7043586 C T CCDC96 Silent p.Q360Q 0.45 TCGA-IR-A3LK-01 4 7045552 7045552 C G TADA2B Missense_Mutation p.I82M 0.56 deleterious(0.02) possibly_damaging(0.644) TCGA-IR-A3LK-01 4 7705979 7705979 G C SORCS2 Silent p.L612L 0.41 TCGA-IR-A3LK-01 4 7764947 7764947 G A AFAP1 3'UTR 0.38 TCGA-IR-A3LK-01 4 78640321 78640321 G C CNOT6L 3'UTR 0.42 TCGA-IR-A3LK-01 4 82125986 82125986 G C PRKG2 Silent p.L72L 0.47 TCGA-IR-A3LK-01 4 83774807 83774807 G A SEC31A Silent p.L690L 0.36 TCGA-IR-A3LK-01 4 84358067 84358067 G A HELQ Silent p.L664L 0.32 TCGA-IR-A3LK-01 4 84377261 84377261 C T MRPS18C Silent p.L11L 0.44 TCGA-IR-A3LK-01 4 84509360 84509360 C T AGPAT9 Intron 0.42 TCGA-IR-A3LK-01 4 85614120 85614120 G C WDFY3 Missense_Mutation p.I2989M 0.42 tolerated(0.26) benign(0.001) TCGA-IR-A3LK-01 4 87610155 87610155 C T PTPN13 Intron 0.54 TCGA-IR-A3LK-01 4 90170537 90170537 G C GPRIN3 Missense_Mutation p.S242C 0.46 tolerated(0.07) benign(0.13) TCGA-IR-A3LK-01 4 983329 983329 C T SLC26A1 Missense_Mutation p.M466I 0.44 tolerated(0.23) benign(0.009) TCGA-IR-A3LK-01 5 100144051 100144051 C T ST8SIA4 3'UTR 0.47 TCGA-IR-A3LK-01 5 10377945 10377945 G C MARCH6 Missense_Mutation p.E19Q 0.14 deleterious(0) possibly_damaging(0.533) TCGA-IR-A3LK-01 5 1076263 1076263 A T SLC12A7 Missense_Mutation p.F613I 0.24 deleterious(0.01) benign(0.2) TCGA-IR-A3LK-01 5 112174700 112174700 G A APC Missense_Mutation p.D1137N 0.39 possibly_damaging(0.898) TCGA-IR-A3LK-01 5 114598462 114598462 G A PGGT1B Silent p.F29F 0.37 TCGA-IR-A3LK-01 5 114611699 114611699 C G CCDC112 Missense_Mutation p.Q173H 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-IR-A3LK-01 5 118811536 118811536 C T HSD17B4 Missense_Mutation p.S132F 0.37 deleterious(0.01) possibly_damaging(0.752) TCGA-IR-A3LK-01 5 122909098 122909098 C G CSNK1G3 Missense_Mutation p.Q101E 0.44 tolerated(0.19) benign(0.01) TCGA-IR-A3LK-01 5 127704923 127704923 C G FBN2 Missense_Mutation p.D734H 0.46 deleterious(0.04) probably_damaging(0.987) TCGA-IR-A3LK-01 5 130883862 130883862 C T RAPGEF6 Missense_Mutation p.E125K 0.31 tolerated(0.12) benign(0.265) TCGA-IR-A3LK-01 5 132534588 132534588 C G FSTL4 3'UTR 0.42 TCGA-IR-A3LK-01 5 133304379 133304379 G T C5orf15 5'UTR 0.21 TCGA-IR-A3LK-01 5 1335215 1335215 G C CLPTM1L Missense_Mutation p.F251L 0.10 tolerated(1) benign(0.003) TCGA-IR-A3LK-01 5 133644410 133644410 G A CDKL3 Missense_Mutation p.P297L 0.31 tolerated(0.31) benign(0.033) TCGA-IR-A3LK-01 5 133914845 133914845 G C JADE2 Missense_Mutation p.E737D 0.42 tolerated(0.42) benign(0.019) TCGA-IR-A3LK-01 5 134143547 134143547 G C DDX46 Silent p.L688L 0.41 TCGA-IR-A3LK-01 5 135489845 135489845 G C SMAD5 Missense_Mutation p.E132D 0.33 deleterious(0.04) benign(0.238) TCGA-IR-A3LK-01 5 137504212 137504212 G C BRD8 Intron 0.41 TCGA-IR-A3LK-01 5 137520288 137520288 G C KIF20A Missense_Mutation p.E536Q 0.44 tolerated(0.52) benign(0.004) TCGA-IR-A3LK-01 5 137762663 137762663 G C KDM3B Splice_Site p.X1471_splice 0.40 TCGA-IR-A3LK-01 5 137762890 137762890 G C KDM3B Silent p.L1505L 0.43 TCGA-IR-A3LK-01 5 137878453 137878453 C T ETF1 Intron 0.64 TCGA-IR-A3LK-01 5 138282845 138282845 C G SIL1 Silent p.L449L 0.36 TCGA-IR-A3LK-01 5 138665871 138665871 C G MATR3 3'UTR 0.48 TCGA-IR-A3LK-01 5 138715720 138715720 G A SLC23A1 Silent p.L235L 0.44 TCGA-IR-A3LK-01 5 138749836 138749836 C G DNAJC18 3'UTR 0.51 TCGA-IR-A3LK-01 5 138749919 138749919 C T DNAJC18 Missense_Mutation p.R332Q 0.35 tolerated(0.09) probably_damaging(0.987) TCGA-IR-A3LK-01 5 140012858 140012858 G A CD14 5'UTR 0.33 TCGA-IR-A3LK-01 5 140023709 140023709 C G TMCO6 Missense_Mutation p.S377C 0.34 deleterious(0) probably_damaging(0.983) TCGA-IR-A3LK-01 5 140034263 140034263 C T IK Intron 0.48 TCGA-IR-A3LK-01 5 140038676 140038676 G A IK Missense_Mutation p.R368Q 0.31 tolerated(0.39) possibly_damaging(0.885) TCGA-IR-A3LK-01 5 140232662 140232662 C A PCDHA9 Intron 0.40 TCGA-IR-A3LK-01 5 140237263 140237263 C T PCDHA10 Silent p.L544L 0.48 TCGA-IR-A3LK-01 5 140480724 140480724 G C PCDHB3 Missense_Mutation p.R164T 0.37 tolerated_low_confidence(0.28) benign(0.001) TCGA-IR-A3LK-01 5 140574598 140574598 C G PCDHB10 3'UTR 0.31 TCGA-IR-A3LK-01 5 140731835 140731835 G C PCDHGB1 Missense_Mutation p.D670H 0.38 deleterious(0) probably_damaging(0.99) TCGA-IR-A3LK-01 5 140746301 140746301 G C PCDHGA5 Missense_Mutation p.E802Q 0.40 tolerated_low_confidence(0.11) benign(0.018) TCGA-IR-A3LK-01 5 140806773 140806773 G A PCDHGB6 Intron 0.38 TCGA-IR-A3LK-01 5 141001051 141001051 C T HDAC3 Missense_Mutation p.S424N 0.36 tolerated(0.57) benign(0) TCGA-IR-A3LK-01 5 141024446 141024446 C T FCHSD1 Missense_Mutation p.D502N 0.46 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 5 141363115 141363115 G C RNF14 Missense_Mutation p.E412Q 0.29 tolerated(1) benign(0.122) TCGA-IR-A3LK-01 5 14462916 14462916 C T TRIO Missense_Mutation p.S1850L 0.32 benign(0.32) TCGA-IR-A3LK-01 5 14507291 14507291 G C TRIO Missense_Mutation p.K2891N 0.27 unknown(0) TCGA-IR-A3LK-01 5 145895133 145895133 C T GPR151 Missense_Mutation p.E182K 0.45 tolerated(0.63) benign(0.122) TCGA-IR-A3LK-01 5 14601467 14601467 C T FAM105A Silent p.L88L 0.12 TCGA-IR-A3LK-01 5 147807033 147807033 G A FBXO38 Missense_Mutation p.D726N 0.36 tolerated_low_confidence(0.05) benign(0.096) TCGA-IR-A3LK-01 5 148207390 148207390 C T ADRB2 Silent p.F332F 0.37 TCGA-IR-A3LK-01 5 149450125 149450125 G T CSF1R Missense_Mutation p.F364L 0.49 tolerated(0.09) benign(0.028) TCGA-IR-A3LK-01 5 149767590 149767590 G C TCOF1 Missense_Mutation p.R995S 0.57 tolerated(0.09) possibly_damaging(0.644) TCGA-IR-A3LK-01 5 149767615 149767615 G A TCOF1 Missense_Mutation p.E1004K 0.38 deleterious(0) probably_damaging(0.918) TCGA-IR-A3LK-01 5 149769569 149769569 G A TCOF1 Missense_Mutation p.E1056K 0.42 tolerated(0.31) benign(0.219) TCGA-IR-A3LK-01 5 150029366 150029366 C T SYNPO Missense_Mutation p.S754L 0.43 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 5 150931047 150931047 G A FAT2 Missense_Mutation p.S1426F 0.39 benign(0.008) TCGA-IR-A3LK-01 5 152870408 152870408 G A GRIA1 5'Flank 0.38 TCGA-IR-A3LK-01 5 153432736 153432736 C G MFAP3 Missense_Mutation p.I184M 0.39 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LK-01 5 153433097 153433097 C G MFAP3 Missense_Mutation p.L305V 0.41 tolerated(0.28) benign(0.395) TCGA-IR-A3LK-01 5 154280963 154280963 G A GEMIN5 Missense_Mutation p.H984Y 0.35 tolerated(0.31) benign(0.02) TCGA-IR-A3LK-01 5 159842242 159842242 C T SLU7 Missense_Mutation p.M20I 0.42 tolerated(0.28) benign(0.001) TCGA-IR-A3LK-01 5 16761604 16761604 C T MYO10 Missense_Mutation p.D570N 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-IR-A3LK-01 5 168620515 168620515 C T SLIT3 Silent p.L127L 0.39 TCGA-IR-A3LK-01 5 169028292 169028292 G A SPDL1 Missense_Mutation p.E445K 0.39 tolerated(1) benign(0.009) TCGA-IR-A3LK-01 5 169496194 169496194 G A DOCK2 Silent p.L1566L 0.28 TCGA-IR-A3LK-01 5 172518197 172518197 C G CREBRF Missense_Mutation p.L339V 0.35 deleterious(0) probably_damaging(0.996) TCGA-IR-A3LK-01 5 174157840 174157840 C T MSX2 3'UTR 0.36 TCGA-IR-A3LK-01 5 175819725 175819725 C G CLTB 3'UTR 0.59 TCGA-IR-A3LK-01 5 176830339 176830339 G A F12 Nonsense_Mutation p.Q483* 0.56 TCGA-IR-A3LK-01 5 176830384 176830384 G A F12 Nonsense_Mutation p.Q468* 0.45 TCGA-IR-A3LK-01 5 177570673 177570673 G C RMND5B Missense_Mutation p.E158Q 0.40 deleterious(0.01) possibly_damaging(0.627) TCGA-IR-A3LK-01 5 177665242 177665242 G C COL23A1 3'UTR 0.42 TCGA-IR-A3LK-01 5 177665341 177665341 G T COL23A1 3'UTR 0.27 TCGA-IR-A3LK-01 5 178391810 178391810 C G ZNF454 Missense_Mutation p.I135M 0.51 tolerated(0.2) benign(0.001) TCGA-IR-A3LK-01 5 182327 182327 C G PLEKHG4B Missense_Mutation p.I1235M 0.24 tolerated(0.14) benign(0.015) TCGA-IR-A3LK-01 5 22078958 22078958 C T CDH12 5'UTR 0.23 TCGA-IR-A3LK-01 5 23510065 23510065 G A PRDM9 Missense_Mutation p.R77Q 0.21 tolerated_low_confidence(0.22) benign(0.002) TCGA-IR-A3LK-01 5 271793 271793 C T PDCD6 5'UTR 0.20 TCGA-IR-A3LK-01 5 31552926 31552926 C G C5orf22 Missense_Mutation p.Q416E 0.26 deleterious(0) possibly_damaging(0.878) TCGA-IR-A3LK-01 5 32089706 32089706 G C PDZD2 Missense_Mutation p.R2051T 0.30 tolerated(0.12) benign(0.159) TCGA-IR-A3LK-01 5 33616118 33616118 C T ADAMTS12 Missense_Mutation p.E735K 0.23 tolerated(0.22) benign(0.02) TCGA-IR-A3LK-01 5 34688287 34688287 C T RAI14 5'UTR 0.26 TCGA-IR-A3LK-01 5 35618062 35618062 C G SPEF2 5'UTR 0.13 TCGA-IR-A3LK-01 5 36265092 36265092 G C RANBP3L Missense_Mutation p.S175C 0.21 deleterious(0.01) possibly_damaging(0.77) TCGA-IR-A3LK-01 5 36877274 36877274 C T NIPBL 5'UTR 0.20 TCGA-IR-A3LK-01 5 37057354 37057354 G A NIPBL Missense_Mutation p.E2444K 0.21 deleterious(0.03) probably_damaging(0.984) TCGA-IR-A3LK-01 5 37138831 37138831 C T C5orf42 Missense_Mutation p.G2874D 0.24 tolerated(0.14) benign(0.004) TCGA-IR-A3LK-01 5 40681722 40681722 G A PTGER4 Silent p.A209A 0.17 TCGA-IR-A3LK-01 5 40681917 40681917 C T PTGER4 Silent p.L274L 0.15 TCGA-IR-A3LK-01 5 41038900 41038900 G C MROH2B Missense_Mutation p.L718V 0.24 deleterious(0) possibly_damaging(0.882) TCGA-IR-A3LK-01 5 41045946 41045946 C G MROH2B Missense_Mutation p.E580Q 0.22 deleterious(0.02) benign(0.138) TCGA-IR-A3LK-01 5 41311947 41311947 C G PLCXD3 3'UTR 0.17 TCGA-IR-A3LK-01 5 42718888 42718888 G C GHR Missense_Mutation p.D427H 0.17 deleterious(0.02) possibly_damaging(0.521) TCGA-IR-A3LK-01 5 43609256 43609256 C T NNT 5'UTR 0.24 TCGA-IR-A3LK-01 5 45260981 45260981 G A HCN1 3'UTR 0.20 TCGA-IR-A3LK-01 5 49694703 49694703 G C EMB 3'UTR 0.50 TCGA-IR-A3LK-01 5 5034588 5034588 G A LINC01020 RNA 0.21 TCGA-IR-A3LK-01 5 5222971 5222971 G A ADAMTS16 Missense_Mutation p.E559K 0.21 deleterious(0) possibly_damaging(0.786) TCGA-IR-A3LK-01 5 54618187 54618187 C G SKIV2L2 Nonsense_Mutation p.S56* 0.36 TCGA-IR-A3LK-01 5 56212639 56212639 C T SETD9 Intron 0.41 TCGA-IR-A3LK-01 5 61694524 61694524 C A DIMT1 Silent p.L115L 0.48 TCGA-IR-A3LK-01 5 61694532 61694532 C T DIMT1 Missense_Mutation p.D113N 0.50 tolerated(0.05) probably_damaging(1) TCGA-IR-A3LK-01 5 61822025 61822025 G A IPO11 Silent p.L691L 0.39 TCGA-IR-A3LK-01 5 633995 633995 C T CEP72 Silent p.L208L 0.27 TCGA-IR-A3LK-01 5 635651 635651 G C CEP72 Missense_Mutation p.E286Q 0.16 tolerated(0.23) benign(0.01) TCGA-IR-A3LK-01 5 65370955 65370955 G C ERBB2IP Missense_Mutation p.R1294T 0.36 deleterious(0) possibly_damaging(0.653) TCGA-IR-A3LK-01 5 65458257 65458257 C A SREK1 Missense_Mutation p.Q198K 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-IR-A3LK-01 5 6749688 6749688 C G PAPD7 Missense_Mutation p.I285M 0.16 deleterious(0) possibly_damaging(0.695) TCGA-IR-A3LK-01 5 70805710 70805710 G A BDP1 Missense_Mutation p.E931K 0.39 tolerated(0.08) probably_damaging(0.99) TCGA-IR-A3LK-01 5 70806877 70806877 G C BDP1 Missense_Mutation p.E1320Q 0.69 tolerated(0.06) possibly_damaging(0.714) TCGA-IR-A3LK-01 5 71411577 71411577 C G MAP1B Silent p.L79L 0.44 TCGA-IR-A3LK-01 5 71494380 71494380 C G MAP1B Missense_Mutation p.S1733C 0.44 probably_damaging(0.998) TCGA-IR-A3LK-01 5 74655364 74655364 C T HMGCR Nonsense_Mutation p.Q814* 0.33 TCGA-IR-A3LK-01 5 74657655 74657655 C G HMGCR 3'UTR 0.43 TCGA-IR-A3LK-01 5 75621353 75621353 G A SV2C Missense_Mutation p.R722Q 0.23 deleterious(0.03) benign(0.085) TCGA-IR-A3LK-01 5 75896663 75896663 G C IQGAP2 Missense_Mutation p.L366F 0.34 tolerated(0.83) benign(0.002) TCGA-IR-A3LK-01 5 76331488 76331488 G C AGGF1 Missense_Mutation p.E146Q 0.29 tolerated(0.32) benign(0.016) TCGA-IR-A3LK-01 5 79465309 79465309 G A SERINC5 Silent p.I204I 0.39 TCGA-IR-A3LK-01 5 79465312 79465312 G A SERINC5 Silent p.L203L 0.38 TCGA-IR-A3LK-01 5 82834631 82834631 G A VCAN Missense_Mutation p.D1937N 0.26 deleterious(0.01) possibly_damaging(0.884) TCGA-IR-A3LK-01 5 83238701 83238701 C T EDIL3 3'UTR 0.45 TCGA-IR-A3LK-01 5 90079012 90079012 G A GPR98 Missense_Mutation p.D4435N 0.33 probably_damaging(0.945) TCGA-IR-A3LK-01 5 93077198 93077198 C T POU5F2 Silent p.P24P 0.45 TCGA-IR-A3LK-01 5 94006606 94006606 G C ANKRD32 Missense_Mutation p.E574Q 0.47 deleterious(0.03) possibly_damaging(0.786) TCGA-IR-A3LK-01 5 95128826 95128826 C T RHOBTB3 Missense_Mutation p.A595V 0.36 deleterious(0.02) possibly_damaging(0.796) TCGA-IR-A3LK-01 5 96350789 96350789 C G LNPEP Nonsense_Mutation p.S789* 0.37 TCGA-IR-A3LK-01 5 96506914 96506914 C G RIOK2 Missense_Mutation p.E259Q 0.40 tolerated(0.15) possibly_damaging(0.549) TCGA-IR-A3LK-01 5 98204255 98204255 C T CHD1 Missense_Mutation p.E1398K 0.35 deleterious(0.04) benign(0.002) TCGA-IR-A3LK-01 6 10557320 10557320 C T GCNT2 Intron 0.30 TCGA-IR-A3LK-01 6 10763241 10763241 C G MAK 3'UTR 0.88 TCGA-IR-A3LK-01 6 109274451 109274451 C A ARMC2 Silent p.L604L 0.47 TCGA-IR-A3LK-01 6 110087939 110087939 G C FIG4 Missense_Mutation p.E531Q 0.36 deleterious(0) possibly_damaging(0.615) TCGA-IR-A3LK-01 6 110423276 110423276 G C WASF1 Nonsense_Mutation p.S346* 0.38 TCGA-IR-A3LK-01 6 110759974 110759974 G A SLC22A16 Silent p.Y420Y 0.29 TCGA-IR-A3LK-01 6 111983016 111983016 C T FYN Missense_Mutation p.E514K 0.34 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LK-01 6 112462006 112462006 C T LAMA4 Missense_Mutation p.E978K 0.30 tolerated(0.35) benign(0.032) TCGA-IR-A3LK-01 6 116575098 116575098 G C TSPYL4 Nonsense_Mutation p.S25* 0.38 TCGA-IR-A3LK-01 6 116754694 116754694 C T DSE Silent p.L367L 0.32 TCGA-IR-A3LK-01 6 117086414 117086414 C G FAM162B Missense_Mutation p.E59D 0.47 tolerated(0.17) benign(0.026) TCGA-IR-A3LK-01 6 118881379 118881379 G A PLN 3'UTR 0.62 TCGA-IR-A3LK-01 6 119525929 119525929 C T MAN1A1 Missense_Mutation p.E371K 0.50 tolerated(0.12) benign(0.017) TCGA-IR-A3LK-01 6 123130433 123130433 T C SMPDL3A Silent p.Y414Y 0.35 TCGA-IR-A3LK-01 6 130763381 130763381 G A TMEM200A 3'UTR 0.36 TCGA-IR-A3LK-01 6 131923425 131923425 G A MED23 Silent p.L676L 0.46 TCGA-IR-A3LK-01 6 132061484 132061484 C T ENPP3 Silent p.I807I 0.30 TCGA-IR-A3LK-01 6 133111403 133111403 C G SLC18B1 Missense_Mutation p.K64N 0.36 tolerated(0.13) benign(0.068) TCGA-IR-A3LK-01 6 135250315 135250315 C G ALDH8A1 Missense_Mutation p.Q296H 0.30 tolerated(0.16) benign(0.158) TCGA-IR-A3LK-01 6 135376037 135376037 G A HBS1L 5'Flank 0.37 TCGA-IR-A3LK-01 6 135515668 135515668 C T MYB Intron 0.37 TCGA-IR-A3LK-01 6 136664583 136664583 C G MAP7 3'Flank 0.44 TCGA-IR-A3LK-01 6 138754791 138754791 C T NHSL1 Missense_Mutation p.D235N 0.39 tolerated(0.49) benign(0.033) TCGA-IR-A3LK-01 6 139498704 139498704 C G HECA 3'UTR 0.51 TCGA-IR-A3LK-01 6 13979756 13979756 G C RNF182 3'UTR 0.37 TCGA-IR-A3LK-01 6 142703096 142703096 C G GPR126 Missense_Mutation p.L360V 0.45 tolerated(0.07) probably_damaging(0.967) TCGA-IR-A3LK-01 6 143074731 143074731 C T HIVEP2 Missense_Mutation p.R2285Q 0.42 tolerated(0.14) benign(0.002) TCGA-IR-A3LK-01 6 145069393 145069393 G A UTRN Missense_Mutation p.E2651K 0.59 deleterious(0) probably_damaging(0.995) TCGA-IR-A3LK-01 6 149918311 149918311 C T KATNA1 Missense_Mutation p.E389K 0.31 tolerated(0.14) benign(0.227) TCGA-IR-A3LK-01 6 149919411 149919411 C G KATNA1 Missense_Mutation p.E322Q 0.43 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LK-01 6 150005474 150005474 G C LATS1 Missense_Mutation p.P251A 0.36 tolerated_low_confidence(0.08) probably_damaging(0.996) TCGA-IR-A3LK-01 6 150005552 150005552 G C LATS1 Missense_Mutation p.Q225E 0.37 deleterious_low_confidence(0.01) benign(0.087) TCGA-IR-A3LK-01 6 150690249 150690249 G C IYD Missense_Mutation p.E28Q 0.54 tolerated(0.23) benign(0.005) TCGA-IR-A3LK-01 6 151766705 151766705 G T RMND1 Missense_Mutation p.S81Y 0.46 tolerated_low_confidence(0.18) benign(0.003) TCGA-IR-A3LK-01 6 151939365 151939365 G C CCDC170 3'UTR 0.33 TCGA-IR-A3LK-01 6 152570389 152570389 C G SYNE1 Silent p.L6493L 0.40 TCGA-IR-A3LK-01 6 152765605 152765605 C A SYNE1 Nonsense_Mutation p.E1260* 0.40 TCGA-IR-A3LK-01 6 152831344 152831344 G T SYNE1 Missense_Mutation p.Q189K 0.34 possibly_damaging(0.905) TCGA-IR-A3LK-01 6 155575620 155575620 C T TIAM2 Missense_Mutation p.H1461Y 0.24 deleterious(0.04) possibly_damaging(0.487) TCGA-IR-A3LK-01 6 157405973 157405973 C T ARID1B Missense_Mutation p.P739S 0.37 probably_damaging(0.999) TCGA-IR-A3LK-01 6 159057564 159057564 G A DYNLT1 3'UTR 0.46 TCGA-IR-A3LK-01 6 159185648 159185648 C G SYTL3 3'UTR 0.60 TCGA-IR-A3LK-01 6 159187023 159187023 G C EZR 3'UTR 0.24 TCGA-IR-A3LK-01 6 16303360 16303360 C G ATXN1 3'UTR 0.75 TCGA-IR-A3LK-01 6 163984548 163984548 C T QKI Missense_Mutation p.P244L 0.39 tolerated(0.07) possibly_damaging(0.632) TCGA-IR-A3LK-01 6 163984559 163984559 G T QKI Missense_Mutation p.G248C 0.40 deleterious(0.01) possibly_damaging(0.728) TCGA-IR-A3LK-01 6 163990254 163990254 G C QKI Intron 0.27 TCGA-IR-A3LK-01 6 165756914 165756914 G A PDE10A Missense_Mutation p.T688M 0.37 deleterious(0.01) benign(0.191) TCGA-IR-A3LK-01 6 166827357 166827357 G A RPS6KA2 Silent p.L675L 0.40 TCGA-IR-A3LK-01 6 170103218 170103218 G A C6orf120 3'UTR 0.43 TCGA-IR-A3LK-01 6 18215304 18215304 G A KDM1B Missense_Mutation p.D494N 0.37 deleterious(0) unknown(0) TCGA-IR-A3LK-01 6 20480156 20480156 G A E2F3 Missense_Mutation p.R158K 0.46 tolerated(0.35) probably_damaging(0.952) TCGA-IR-A3LK-01 6 21597136 21597136 G T SOX4 3'UTR 0.58 TCGA-IR-A3LK-01 6 21597141 21597141 G T SOX4 3'UTR 0.55 TCGA-IR-A3LK-01 6 24289099 24289099 G A DCDC2 Missense_Mutation p.S247F 0.46 tolerated(0.17) benign(0.061) TCGA-IR-A3LK-01 6 24873921 24873921 G A FAM65B Nonsense_Mutation p.Q70* 0.40 TCGA-IR-A3LK-01 6 25097387 25097387 G A CMAHP RNA 0.46 TCGA-IR-A3LK-01 6 26027476 26027476 G A HIST1H4B Missense_Mutation p.S2F 0.87 deleterious_low_confidence(0) benign(0.184) TCGA-IR-A3LK-01 6 26247065 26247065 G A HIST1H4G Silent p.I47I 0.83 TCGA-IR-A3LK-01 6 27833221 27833221 G C HIST1H2AL Missense_Mutation p.R30P 0.39 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-IR-A3LK-01 6 28120986 28120986 G C ZKSCAN8 Missense_Mutation p.E310Q 0.34 tolerated(0.1) benign(0.38) TCGA-IR-A3LK-01 6 29640768 29640768 G A ZFP57 Missense_Mutation p.H374Y 0.50 tolerated(1) benign(0.002) TCGA-IR-A3LK-01 6 30638915 30638915 C A DHX16 Missense_Mutation p.G115V 0.90 tolerated(0.19) unknown(0) TCGA-IR-A3LK-01 6 30668189 30668189 C G MDC1 3'UTR 0.58 TCGA-IR-A3LK-01 6 30681692 30681692 G C MDC1 Silent p.V135V 0.33 TCGA-IR-A3LK-01 6 30917085 30917085 C G DPCR1 Missense_Mutation p.L282V 0.21 deleterious(0.05) unknown(0) TCGA-IR-A3LK-01 6 31323001 31323001 C T HLA-B Splice_Site p.X299_splice 0.81 TCGA-IR-A3LK-01 6 31540806 31540806 C T LTA Silent p.L67L 0.88 TCGA-IR-A3LK-01 6 31675808 31675808 C T LY6G6F Silent p.L181L 0.38 TCGA-IR-A3LK-01 6 31842781 31842781 G A SLC44A4 Silent p.F89F 0.37 TCGA-IR-A3LK-01 6 31848581 31848581 G A EHMT2 Silent p.I1107I 0.38 TCGA-IR-A3LK-01 6 32148988 32148988 C G AGER Missense_Mutation p.E383Q 0.31 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-IR-A3LK-01 6 32149006 32149006 C T AGER Missense_Mutation p.E377K 0.27 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-IR-A3LK-01 6 33171909 33171909 C G SLC39A7 3'UTR 0.41 TCGA-IR-A3LK-01 6 33173928 33173928 G A HSD17B8 Silent p.P223P 0.44 TCGA-IR-A3LK-01 6 33218546 33218546 G T VPS52 3'UTR 0.25 TCGA-IR-A3LK-01 6 33368141 33368141 C T KIFC1 Intron 0.40 TCGA-IR-A3LK-01 6 33368154 33368154 C T KIFC1 Intron 0.38 TCGA-IR-A3LK-01 6 33385937 33385937 G A CUTA Missense_Mutation p.S9F 0.43 tolerated_low_confidence(1) unknown(0) TCGA-IR-A3LK-01 6 35021879 35021879 G T ANKS1A Nonsense_Mutation p.E672* 0.32 TCGA-IR-A3LK-01 6 351051 351051 T A DUSP22 3'UTR 0.19 TCGA-IR-A3LK-01 6 35208231 35208231 C T SCUBE3 Missense_Mutation p.R345C 0.41 deleterious(0) benign(0.339) TCGA-IR-A3LK-01 6 35210024 35210024 C G SCUBE3 Missense_Mutation p.I487M 0.45 deleterious(0) benign(0.252) TCGA-IR-A3LK-01 6 35378855 35378855 G C PPARD 5'UTR 0.52 TCGA-IR-A3LK-01 6 35806520 35806520 G A SRPK1 Intron 0.41 TCGA-IR-A3LK-01 6 36993679 36993679 G C FGD2 Missense_Mutation p.E524Q 0.40 tolerated(0.14) benign(0.022) TCGA-IR-A3LK-01 6 37141960 37141960 C T PIM1 3'UTR 0.41 TCGA-IR-A3LK-01 6 38794087 38794087 G A DNAH8 Missense_Mutation p.D1118N 0.31 probably_damaging(0.979) TCGA-IR-A3LK-01 6 38897371 38897371 C G DNAH8 Missense_Mutation p.H3518D 0.40 benign(0.001) TCGA-IR-A3LK-01 6 39282796 39282796 C T KCNK16 3'UTR 0.36 TCGA-IR-A3LK-01 6 41040816 41040816 G C NFYA 5'UTR 0.42 TCGA-IR-A3LK-01 6 41739016 41739016 C A FRS3 Nonsense_Mutation p.E274* 0.37 TCGA-IR-A3LK-01 6 41889361 41889361 G A BYSL Missense_Mutation p.D21N 0.60 tolerated(0.2) benign(0.179) TCGA-IR-A3LK-01 6 42141390 42141390 G A GUCA1A Silent p.L13L 0.42 TCGA-IR-A3LK-01 6 42600322 42600322 G A UBR2 Missense_Mutation p.M438I 0.44 tolerated(1) benign(0.005) TCGA-IR-A3LK-01 6 42600337 42600337 G A UBR2 Silent p.K443K 0.38 TCGA-IR-A3LK-01 6 42672348 42672348 G C PRPH2 Missense_Mutation p.R195G 0.35 deleterious(0) possibly_damaging(0.837) TCGA-IR-A3LK-01 6 42823607 42823607 C T GLTSCR1L Missense_Mutation p.S687L 0.64 tolerated(0.35) benign(0.001) TCGA-IR-A3LK-01 6 43323475 43323475 C T ZNF318 Missense_Mutation p.D533N 0.51 possibly_damaging(0.907) TCGA-IR-A3LK-01 6 43325332 43325332 G A ZNF318 Silent p.I240I 0.44 TCGA-IR-A3LK-01 6 44201202 44201202 C T SLC29A1 Silent p.F436F 0.36 TCGA-IR-A3LK-01 6 46657383 46657383 G T TDRD6 Missense_Mutation p.L506F 0.40 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 6 46827113 46827113 G T GPR116 Missense_Mutation p.P843T 0.37 tolerated(0.24) benign(0.045) TCGA-IR-A3LK-01 6 52770548 52770548 C T GSTA3 Missense_Mutation p.E29K 0.24 deleterious(0.04) benign(0.122) TCGA-IR-A3LK-01 6 53788797 53788797 C T LRRC1 3'UTR 0.37 TCGA-IR-A3LK-01 6 56471763 56471763 C G DST Intron 0.36 TCGA-IR-A3LK-01 6 66205254 66205254 G A EYS Missense_Mutation p.S17F 0.41 tolerated_low_confidence(0.22) benign(0) TCGA-IR-A3LK-01 6 69728301 69728301 G C BAI3 Missense_Mutation p.E673Q 0.44 tolerated(0.08) possibly_damaging(0.808) TCGA-IR-A3LK-01 6 71298438 71298438 C G C6orf57 3'UTR 0.31 TCGA-IR-A3LK-01 6 72678707 72678707 G A RIMS1 Silent p.A62A 0.38 TCGA-IR-A3LK-01 6 74135179 74135179 G A MB21D1 Missense_Mutation p.T447I 0.28 tolerated(0.07) benign(0.3) TCGA-IR-A3LK-01 6 74161536 74161536 C T MB21D1 Silent p.Q123Q 0.56 TCGA-IR-A3LK-01 6 74519827 74519827 C T CD109 Missense_Mutation p.S1159F 0.42 deleterious(0.02) benign(0.1) TCGA-IR-A3LK-01 6 7559466 7559466 C G DSP Missense_Mutation p.Q144E 0.48 probably_damaging(0.953) TCGA-IR-A3LK-01 6 78173093 78173093 G A HTR1B Missense_Mutation p.P10S 0.33 tolerated_low_confidence(0.23) benign(0) TCGA-IR-A3LK-01 6 7886214 7886214 G A TXNDC5 Silent p.F342F 0.86 TCGA-IR-A3LK-01 6 8097678 8097678 T C EEF1E1 Missense_Mutation p.N37S 0.42 tolerated(0.34) benign(0.001) TCGA-IR-A3LK-01 6 82906017 82906017 C T IBTK Missense_Mutation p.E1058K 0.42 deleterious(0.01) benign(0.06) TCGA-IR-A3LK-01 6 84235110 84235110 G C PRSS35 3'UTR 0.45 TCGA-IR-A3LK-01 6 84884571 84884571 C G KIAA1009 Missense_Mutation p.E634Q 0.41 tolerated(0.41) probably_damaging(0.999) TCGA-IR-A3LK-01 6 88304309 88304309 G C ORC3 Intron 0.23 TCGA-IR-A3LK-01 6 89808380 89808380 C T SRSF12 Missense_Mutation p.E235K 0.45 tolerated_low_confidence(0.46) benign(0.009) TCGA-IR-A3LK-01 6 89974134 89974134 C T GABRR2 Silent p.E361E 0.45 TCGA-IR-A3LK-01 6 90424429 90424429 C T MDN1 Missense_Mutation p.R2301Q 0.31 probably_damaging(1) TCGA-IR-A3LK-01 6 90577846 90577846 G A CASP8AP2 RNA 0.52 TCGA-IR-A3LK-01 6 90718551 90718551 C T BACH2 Missense_Mutation p.E5K 0.44 deleterious(0.01) probably_damaging(0.943) TCGA-IR-A3LK-01 6 93951958 93951958 C G EPHA7 3'UTR 0.47 TCGA-IR-A3LK-01 6 96658417 96658417 C G FUT9 3'UTR 0.27 TCGA-IR-A3LK-01 7 100164787 100164787 C T AGFG2 3'UTR 0.65 TCGA-IR-A3LK-01 7 100807818 100807818 G A VGF Nonsense_Mutation p.Q103* 0.88 TCGA-IR-A3LK-01 7 101740715 101740715 G A CUX1 Missense_Mutation p.E125K 0.58 deleterious(0.02) unknown(0) TCGA-IR-A3LK-01 7 102066993 102066993 G C PRKRIP1 3'UTR 0.72 TCGA-IR-A3LK-01 7 104783727 104783727 C T SRPK2 Silent p.K288K 0.35 TCGA-IR-A3LK-01 7 105207537 105207537 C T EFCAB10 Intron 0.32 TCGA-IR-A3LK-01 7 105739677 105739677 C T SYPL1 Missense_Mutation p.E59K 0.26 tolerated(0.48) possibly_damaging(0.543) TCGA-IR-A3LK-01 7 113518448 113518448 G A PPP1R3A Missense_Mutation p.S900F 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-IR-A3LK-01 7 11486868 11486868 C T THSD7A Missense_Mutation p.R930H 0.37 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 7 115892027 115892027 G A TES Missense_Mutation p.E306K 0.31 deleterious(0) probably_damaging(0.949) TCGA-IR-A3LK-01 7 116595149 116595149 C T ST7-OT4 Missense_Mutation p.S4L 0.36 tolerated_low_confidence(0.33) unknown(0) TCGA-IR-A3LK-01 7 116862962 116862962 G A ST7 Silent p.K562K 0.54 TCGA-IR-A3LK-01 7 130040635 130040635 G C CEP41 Missense_Mutation p.L224V 0.90 tolerated(0.67) benign(0.012) TCGA-IR-A3LK-01 7 133812377 133812377 G A LRGUK Missense_Mutation p.G86E 0.40 tolerated_low_confidence(1) benign(0) TCGA-IR-A3LK-01 7 134261723 134261723 C T AKR1B15 Silent p.I278I 0.30 TCGA-IR-A3LK-01 7 137773510 137773510 G C AKR1D1 Missense_Mutation p.G86A 0.17 tolerated(0.05) probably_damaging(0.986) TCGA-IR-A3LK-01 7 138341201 138341201 A G SVOPL Silent p.L176L 0.33 TCGA-IR-A3LK-01 7 138943287 138943287 C G UBN2 Missense_Mutation p.I239M 0.28 deleterious(0) possibly_damaging(0.715) TCGA-IR-A3LK-01 7 140153281 140153281 C G MKRN1 3'UTR 0.48 TCGA-IR-A3LK-01 7 140477862 140477862 C T BRAF Silent p.V482V 0.29 TCGA-IR-A3LK-01 7 142013313 142013313 G A TRBV4-1 Silent p.Q56Q 0.36 TCGA-IR-A3LK-01 7 142985551 142985552 - GCGGC CASP2 Frame_Shift_Ins p.P4Rfs*16 0.26 TCGA-IR-A3LK-01 7 148801459 148801459 C G ZNF425 Missense_Mutation p.E502Q 0.34 tolerated(0.11) benign(0.228) TCGA-IR-A3LK-01 7 148921926 148921926 C T ZNF282 3'UTR 0.50 TCGA-IR-A3LK-01 7 149519678 149519678 C T SSPO RNA 0.58 TCGA-IR-A3LK-01 7 150706299 150706299 G A NOS3 Silent p.R756R 0.55 TCGA-IR-A3LK-01 7 151945301 151945301 C T KMT2C Missense_Mutation p.E740K 0.32 benign(0.028) TCGA-IR-A3LK-01 7 1523759 1523759 G C INTS1 Silent p.L1103L 0.37 TCGA-IR-A3LK-01 7 154684696 154684696 G A DPP6 3'UTR 0.39 TCGA-IR-A3LK-01 7 155187767 155187767 G C AC008060.7 Missense_Mutation p.W73C 0.28 possibly_damaging(0.883) TCGA-IR-A3LK-01 7 17836561 17836561 C T SNX13 Missense_Mutation p.D839N 0.39 tolerated(0.34) benign(0.055) TCGA-IR-A3LK-01 7 20452525 20452525 G A ITGB8 3'UTR 0.30 TCGA-IR-A3LK-01 7 21469217 21469217 C G SP4 Missense_Mutation p.S145C 0.32 tolerated(0.07) benign(0.258) TCGA-IR-A3LK-01 7 21646158 21646158 G C DNAH11 Missense_Mutation p.D1255H 0.46 possibly_damaging(0.866) TCGA-IR-A3LK-01 7 22985680 22985680 G C FAM126A Nonsense_Mutation p.S365* 0.41 TCGA-IR-A3LK-01 7 2406170 2406170 G A EIF3B Missense_Mutation p.D434N 0.51 deleterious(0.04) probably_damaging(0.999) TCGA-IR-A3LK-01 7 2611929 2611929 G C IQCE Missense_Mutation p.K121N 0.37 deleterious(0) possibly_damaging(0.71) TCGA-IR-A3LK-01 7 27150136 27150136 C T HOXA3 Missense_Mutation p.D42N 0.40 deleterious(0) benign(0.031) TCGA-IR-A3LK-01 7 27211464 27211464 G C HOXA10 3'UTR 0.53 TCGA-IR-A3LK-01 7 28534554 28534554 C T CREB5 Missense_Mutation p.H36Y 0.47 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LK-01 7 28993035 28993035 C G AC005013.5 5'Flank 0.54 TCGA-IR-A3LK-01 7 28993116 28993116 G A AC005013.5 5'Flank 0.38 TCGA-IR-A3LK-01 7 2976668 2976668 C T CARD11 Intron 0.43 TCGA-IR-A3LK-01 7 30197181 30197181 G C MTURN 3'UTR 0.56 TCGA-IR-A3LK-01 7 34917691 34917691 C T NPSR1 Silent p.V343V 0.39 TCGA-IR-A3LK-01 7 36579973 36579973 C G AOAH Missense_Mutation p.D420H 0.40 deleterious(0.01) benign(0.25) TCGA-IR-A3LK-01 7 37960781 37960781 C T EPDR1 Silent p.D80D 0.48 TCGA-IR-A3LK-01 7 4050690 4050690 C T SDK1 Missense_Mutation p.R742W 0.38 deleterious(0) probably_damaging(0.991) TCGA-IR-A3LK-01 7 45717777 45717777 C T ADCY1 Nonsense_Mutation p.Q605* 0.41 TCGA-IR-A3LK-01 7 45726197 45726197 C G ADCY1 Silent p.L793L 0.39 TCGA-IR-A3LK-01 7 5105927 5105927 G A RBAK 3'UTR 0.24 TCGA-IR-A3LK-01 7 5267828 5267828 G A WIPI2 Silent p.L369L 0.45 TCGA-IR-A3LK-01 7 5327568 5327568 C G SLC29A4 Missense_Mutation p.Q41E 0.41 tolerated(0.32) benign(0.007) TCGA-IR-A3LK-01 7 5340178 5340178 C A SLC29A4 Missense_Mutation p.H445Q 0.47 tolerated(0.09) probably_damaging(0.968) TCGA-IR-A3LK-01 7 55540725 55540725 C T VOPP1 Silent p.P114P 0.37 TCGA-IR-A3LK-01 7 6200656 6200656 G C USP42 3'UTR 0.33 TCGA-IR-A3LK-01 7 6202751 6202751 G C CYTH3 3'UTR 0.38 TCGA-IR-A3LK-01 7 64451484 64451484 G C ERV3-1 3'UTR 0.47 TCGA-IR-A3LK-01 7 70252204 70252204 C G AUTS2 Nonsense_Mutation p.S773* 0.41 TCGA-IR-A3LK-01 7 71130547 71130547 C G WBSCR17 Missense_Mutation p.S411C 0.26 tolerated(0.15) probably_damaging(0.945) TCGA-IR-A3LK-01 7 71177239 71177239 C G WBSCR17 3'UTR 0.56 TCGA-IR-A3LK-01 7 77256266 77256266 G A PTPN12 Missense_Mutation p.E424K 0.40 deleterious_low_confidence(0.01) benign(0.297) TCGA-IR-A3LK-01 7 77484121 77484121 C G PHTF2 Intron 0.50 TCGA-IR-A3LK-01 7 82580629 82580629 G A PCLO Missense_Mutation p.S3092L 0.40 unknown(0) TCGA-IR-A3LK-01 7 84625987 84625987 G A SEMA3D 3'UTR 0.75 TCGA-IR-A3LK-01 7 87505919 87505919 C T DBF4 5'UTR 0.51 TCGA-IR-A3LK-01 7 909082 909082 C G SUN1 Missense_Mutation p.L693V 0.32 tolerated(0.2) benign(0.384) TCGA-IR-A3LK-01 7 92164486 92164486 G A RBM48 Intron 0.58 TCGA-IR-A3LK-01 7 92242710 92242710 C G CDK6 3'UTR 0.52 TCGA-IR-A3LK-01 7 97821308 97821308 G C LMTK2 Missense_Mutation p.E511Q 0.43 tolerated(0.2) possibly_damaging(0.816) TCGA-IR-A3LK-01 7 97937304 97937304 C G BAIAP2L1 Intron 0.47 TCGA-IR-A3LK-01 7 98592351 98592351 G C TRRAP Missense_Mutation p.E3383Q 0.41 probably_damaging(0.942) TCGA-IR-A3LK-01 7 98625715 98625715 G A SMURF1 3'UTR 0.33 TCGA-IR-A3LK-01 7 99063800 99063800 G A ATP5J2 5'UTR 0.32 TCGA-IR-A3LK-01 7 99173862 99173862 G C ZNF655 3'UTR 0.48 TCGA-IR-A3LK-01 7 99821295 99821295 G C GATS Silent p.V146V 0.63 TCGA-IR-A3LK-01 8 100147896 100147896 G C VPS13B Missense_Mutation p.D500H 0.34 deleterious(0) probably_damaging(0.953) TCGA-IR-A3LK-01 8 102678907 102678907 C A GRHL2 Missense_Mutation p.F618L 0.33 tolerated(0.3) benign(0.005) TCGA-IR-A3LK-01 8 103341421 103341421 G A UBR5 Missense_Mutation p.S408L 0.50 deleterious(0.02) benign(0.024) TCGA-IR-A3LK-01 8 106813964 106813964 G C ZFPM2 Missense_Mutation p.E552Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 8 110489463 110489463 G A PKHD1L1 Missense_Mutation p.R2976K 0.60 tolerated(1) benign(0) TCGA-IR-A3LK-01 8 119391916 119391916 C T SAMD12 Missense_Mutation p.D116N 0.31 tolerated(0.07) possibly_damaging(0.895) TCGA-IR-A3LK-01 8 121228635 121228635 C G COL14A1 Missense_Mutation p.S548C 0.30 tolerated(0.07) possibly_damaging(0.897) TCGA-IR-A3LK-01 8 124413038 124413038 G C ATAD2 5'Flank 0.22 TCGA-IR-A3LK-01 8 124797868 124797868 G A FAM91A1 Splice_Site p.X284_splice 0.52 TCGA-IR-A3LK-01 8 126085488 126085488 C A KIAA0196 Nonsense_Mutation p.E353* 0.31 TCGA-IR-A3LK-01 8 130864412 130864412 G C FAM49B Nonsense_Mutation p.S210* 0.21 TCGA-IR-A3LK-01 8 131249237 131249237 G A ASAP1 Silent p.L64L 0.33 TCGA-IR-A3LK-01 8 135612525 135612525 G A ZFAT Intron 0.20 TCGA-IR-A3LK-01 8 142221899 142221899 C T SLC45A4 Intron 0.27 TCGA-IR-A3LK-01 8 143559620 143559620 G A BAI1 Missense_Mutation p.R487Q 0.54 deleterious(0.02) possibly_damaging(0.553) TCGA-IR-A3LK-01 8 143783124 143783124 G A LY6K Silent p.A70A 0.52 TCGA-IR-A3LK-01 8 144295729 144295729 G C GPIHBP1 Missense_Mutation p.E29Q 0.49 tolerated(0.13) possibly_damaging(0.727) TCGA-IR-A3LK-01 8 144464844 144464844 C G RHPN1 3'UTR 0.17 TCGA-IR-A3LK-01 8 144687050 144687050 G C PYCRL 3'UTR 0.21 TCGA-IR-A3LK-01 8 144776075 144776075 G C ZNF707 Missense_Mutation p.R164T 0.36 tolerated(0.6) benign(0.001) TCGA-IR-A3LK-01 8 144776287 144776287 G A ZNF707 Missense_Mutation p.E235K 0.37 tolerated(0.27) benign(0.094) TCGA-IR-A3LK-01 8 144776766 144776766 G C ZNF707 3'UTR 0.29 TCGA-IR-A3LK-01 8 144776874 144776874 G C ZNF707 3'UTR 0.29 TCGA-IR-A3LK-01 8 144876128 144876128 G A SCRIB Missense_Mutation p.P1284L 0.60 benign(0.004) TCGA-IR-A3LK-01 8 144941887 144941887 G A EPPK1 Silent p.I1845I 0.19 TCGA-IR-A3LK-01 8 144942235 144942235 G A EPPK1 Silent p.F1729F 0.29 TCGA-IR-A3LK-01 8 144942955 144942955 G A EPPK1 Silent p.L1489L 0.37 TCGA-IR-A3LK-01 8 144943526 144943526 G A EPPK1 Missense_Mutation p.S1299L 0.25 probably_damaging(0.998) TCGA-IR-A3LK-01 8 144992701 144992701 G A PLEC Missense_Mutation p.S3900L 0.32 probably_damaging(0.993) TCGA-IR-A3LK-01 8 145051698 145051698 G A PARP10 Missense_Mutation p.S1011F 0.50 deleterious(0.04) benign(0.445) TCGA-IR-A3LK-01 8 145160643 145160643 G A MAF1 Silent p.E19E 0.31 TCGA-IR-A3LK-01 8 145160803 145160803 G A MAF1 Missense_Mutation p.D39N 0.19 tolerated(0.58) benign(0.017) TCGA-IR-A3LK-01 8 145727029 145727029 C G PPP1R16A Missense_Mutation p.P444A 0.25 tolerated(0.27) benign(0.001) TCGA-IR-A3LK-01 8 146067954 146067954 C T ZNF7 Nonsense_Mutation p.Q488* 0.26 TCGA-IR-A3LK-01 8 146157398 146157398 G A ZNF16 Missense_Mutation p.H259Y 0.56 deleterious(0.02) benign(0.026) TCGA-IR-A3LK-01 8 146202485 146202485 C T ZNF252P RNA 0.27 TCGA-IR-A3LK-01 8 18258175 18258175 C T NAT2 Missense_Mutation p.S221L 0.83 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 8 192960 192960 G A ZNF596 Missense_Mutation p.R29K 0.75 tolerated(0.09) benign(0.114) TCGA-IR-A3LK-01 8 24193049 24193049 G C ADAM28 Missense_Mutation p.D488H 0.79 deleterious(0) probably_damaging(0.989) TCGA-IR-A3LK-01 8 27097546 27097546 G C STMN4 Missense_Mutation p.S178C 0.69 deleterious(0.03) possibly_damaging(0.543) TCGA-IR-A3LK-01 8 27922101 27922101 C T NUGGC Missense_Mutation p.V287M 0.67 deleterious(0) probably_damaging(0.984) TCGA-IR-A3LK-01 8 3141850 3141850 G T CSMD1 Missense_Mutation p.F1323L 0.68 probably_damaging(0.992) TCGA-IR-A3LK-01 8 36675259 36675259 G C KCNU1 Missense_Mutation p.E363Q 0.70 deleterious(0) probably_damaging(0.964) TCGA-IR-A3LK-01 8 42227439 42227439 G A POLB Missense_Mutation p.M282I 0.43 tolerated(0.06) possibly_damaging(0.83) TCGA-IR-A3LK-01 8 42552739 42552739 C T CHRNB3 Missense_Mutation p.S17L 0.47 tolerated(0.16) benign(0.013) TCGA-IR-A3LK-01 8 52325734 52325734 G C PXDNL Missense_Mutation p.S627C 0.42 deleterious(0.01) possibly_damaging(0.806) TCGA-IR-A3LK-01 8 53852671 53852671 G A NPBWR1 Missense_Mutation p.M68I 0.46 deleterious(0.02) benign(0.119) TCGA-IR-A3LK-01 8 59404293 59404293 G C CYP7A1 Missense_Mutation p.T419R 0.41 tolerated(0.14) benign(0.37) TCGA-IR-A3LK-01 8 61192272 61192272 G A CA8 Nonsense_Mutation p.Q90* 0.29 TCGA-IR-A3LK-01 8 6357249 6357249 G C ANGPT2 3'UTR 0.74 TCGA-IR-A3LK-01 8 6614722 6614722 G A AGPAT5 Missense_Mutation p.R303K 0.79 tolerated(0.7) benign(0.002) TCGA-IR-A3LK-01 8 6735347 6735347 G C DEFB1 Silent p.L11L 0.55 TCGA-IR-A3LK-01 8 74334846 74334846 C G STAU2 Intron 0.34 TCGA-IR-A3LK-01 8 77767198 77767198 C T ZFHX4 Nonsense_Mutation p.R2681* 0.42 TCGA-IR-A3LK-01 8 77912475 77912475 G A PEX2 Intron 0.29 TCGA-IR-A3LK-01 8 81399682 81399682 G C ZBTB10 Missense_Mutation p.D213H 0.30 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-IR-A3LK-01 8 87111214 87111214 G C ATP6V0D2 Missense_Mutation p.E3Q 0.22 deleterious(0.01) benign(0.107) TCGA-IR-A3LK-01 8 87590944 87590944 G A CNGB3 Silent p.L692L 0.28 TCGA-IR-A3LK-01 8 87878683 87878683 C G CNBD1 5'UTR 0.20 TCGA-IR-A3LK-01 8 91081237 91081237 C T CALB1 Missense_Mutation p.E121K 0.24 tolerated(0.42) possibly_damaging(0.467) TCGA-IR-A3LK-01 8 91813934 91813934 G C NECAB1 Missense_Mutation p.D39H 0.23 deleterious(0) possibly_damaging(0.831) TCGA-IR-A3LK-01 8 94746938 94746938 G A RBM12B Silent p.F567F 0.27 TCGA-IR-A3LK-01 8 95272461 95272461 G C GEM Missense_Mutation p.L91V 0.27 deleterious(0.01) benign(0.028) TCGA-IR-A3LK-01 8 95523629 95523629 C G KIAA1429 Missense_Mutation p.Q1058H 0.27 deleterious(0.02) possibly_damaging(0.904) TCGA-IR-A3LK-01 8 98041688 98041688 G C CPQ Missense_Mutation p.G340A 0.28 tolerated(0.37) benign(0.033) TCGA-IR-A3LK-01 9 100617367 100617367 C T FOXE1 3'UTR 0.42 TCGA-IR-A3LK-01 9 101050692 101050692 C T GABBR2 3'UTR 0.43 TCGA-IR-A3LK-01 9 101052107 101052107 C T GABBR2 3'UTR 0.33 TCGA-IR-A3LK-01 9 101748154 101748154 C T COL15A1 Silent p.L136L 0.41 TCGA-IR-A3LK-01 9 104124290 104124290 G A BAAT 3'UTR 0.26 TCGA-IR-A3LK-01 9 104184112 104184112 G A ALDOB Silent p.F358F 0.35 TCGA-IR-A3LK-01 9 113149654 113149654 G A SVEP1 Missense_Mutation p.S3324F 0.38 benign(0.033) TCGA-IR-A3LK-01 9 113217957 113217957 C G SVEP1 Missense_Mutation p.E1234Q 0.35 possibly_damaging(0.873) TCGA-IR-A3LK-01 9 114521010 114521010 G A C9orf84 Silent p.F123F 0.44 TCGA-IR-A3LK-01 9 115947059 115947059 G C FKBP15 Silent p.L508L 0.34 TCGA-IR-A3LK-01 9 117143626 117143626 G A AKNA 5'UTR 0.41 TCGA-IR-A3LK-01 9 117266634 117266634 C G DFNB31 Missense_Mutation p.E150Q 0.32 deleterious(0.02) possibly_damaging(0.858) TCGA-IR-A3LK-01 9 117396098 117396098 G C C9orf91 Silent p.L175L 0.47 TCGA-IR-A3LK-01 9 120475262 120475262 G A TLR4 Missense_Mutation p.E286K 0.35 tolerated(0.25) benign(0.006) TCGA-IR-A3LK-01 9 123605112 123605112 G A PSMD5 Missense_Mutation p.H26Y 0.53 deleterious(0.01) benign(0.148) TCGA-IR-A3LK-01 9 125281687 125281687 C T OR1J4 Nonsense_Mutation p.Q90* 0.41 TCGA-IR-A3LK-01 9 125613673 125613673 C G RC3H2 Missense_Mutation p.D1054H 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-IR-A3LK-01 9 125645647 125645647 C G RC3H2 Missense_Mutation p.E199Q 0.28 deleterious(0) probably_damaging(0.954) TCGA-IR-A3LK-01 9 127622541 127622541 C T RPL35 Missense_Mutation p.R48Q 0.44 tolerated(0.09) benign(0.033) TCGA-IR-A3LK-01 9 127700957 127700957 C G GOLGA1 Missense_Mutation p.E12Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 9 127982945 127982945 C T RABEPK Silent p.P164P 0.28 TCGA-IR-A3LK-01 9 130438193 130438193 C T STXBP1 Silent p.I407I 0.32 TCGA-IR-A3LK-01 9 130438202 130438202 C G STXBP1 Silent p.L410L 0.33 TCGA-IR-A3LK-01 9 130438920 130438920 C G STXBP1 Intron 0.48 TCGA-IR-A3LK-01 9 130575577 130575577 C G FPGS Silent p.L486L 0.42 TCGA-IR-A3LK-01 9 131218705 131218705 C T ODF2 5'UTR 0.36 TCGA-IR-A3LK-01 9 131221897 131221897 C G ODF2 Silent p.V28V 0.38 TCGA-IR-A3LK-01 9 131670871 131670871 C G LRRC8A Silent p.L476L 0.25 TCGA-IR-A3LK-01 9 131765678 131765678 C G NUP188 Missense_Mutation p.S1460C 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-IR-A3LK-01 9 131882887 131882887 C T PPP2R4 Nonsense_Mutation p.Q43* 0.38 TCGA-IR-A3LK-01 9 132641781 132641781 G A USP20 Intron 0.45 TCGA-IR-A3LK-01 9 134050876 134050876 C T NUP214 Nonsense_Mutation p.Q1063* 0.41 TCGA-IR-A3LK-01 9 135979179 135979179 G A RALGDS Silent p.L571L 0.32 TCGA-IR-A3LK-01 9 136212068 136212068 C T MED22 Missense_Mutation p.E55K 0.37 tolerated(0.12) benign(0.035) TCGA-IR-A3LK-01 9 136215803 136215803 G C RPL7A Missense_Mutation p.K10N 0.40 deleterious(0.02) unknown(0) TCGA-IR-A3LK-01 9 137622308 137622308 C G COL5A1 Missense_Mutation p.S384C 0.35 possibly_damaging(0.887) TCGA-IR-A3LK-01 9 138662821 138662821 G A KCNT1 Missense_Mutation p.E630K 0.31 deleterious(0) probably_damaging(0.968) TCGA-IR-A3LK-01 9 138714509 138714509 C G CAMSAP1 Missense_Mutation p.E666D 0.58 tolerated(0.18) benign(0.002) TCGA-IR-A3LK-01 9 139649782 139649782 C T LCN8 Missense_Mutation p.R112Q 0.52 deleterious(0.03) probably_damaging(0.99) TCGA-IR-A3LK-01 9 139700619 139700619 G A CCDC183 Silent p.L346L 0.57 TCGA-IR-A3LK-01 9 139700649 139700649 G A CCDC183 Silent p.E356E 0.46 TCGA-IR-A3LK-01 9 139701034 139701034 G A CCDC183 Missense_Mutation p.M396I 0.33 deleterious(0.03) benign(0.149) TCGA-IR-A3LK-01 9 140287319 140287319 T C EXD3 Intron 0.36 TCGA-IR-A3LK-01 9 141070177 141070177 G T TUBBP5 Intron 0.40 TCGA-IR-A3LK-01 9 14801789 14801789 G C FREM1 Missense_Mutation p.F1185L 0.08 tolerated(0.06) benign(0.032) TCGA-IR-A3LK-01 9 16436783 16436783 C G BNC2 Missense_Mutation p.R470P 0.35 deleterious(0) probably_damaging(0.988) TCGA-IR-A3LK-01 9 20622291 20622291 G A MLLT3 5'UTR 0.33 TCGA-IR-A3LK-01 9 20770100 20770100 C T FOCAD Missense_Mutation p.H257Y 0.41 tolerated(0.6) benign(0.002) TCGA-IR-A3LK-01 9 27109493 27109493 G T TEK 5'UTR 0.36 TCGA-IR-A3LK-01 9 33073633 33073633 C T SMU1 Silent p.L66L 0.42 TCGA-IR-A3LK-01 9 33920307 33920307 G C UBE2R2 3'UTR 0.50 TCGA-IR-A3LK-01 9 35560361 35560361 G C RUSC2 Missense_Mutation p.E1242Q 0.39 tolerated(0.25) possibly_damaging(0.464) TCGA-IR-A3LK-01 9 35561438 35561438 G C RUSC2 3'UTR 0.25 TCGA-IR-A3LK-01 9 35704813 35704813 C G TLN1 Splice_Site p.X1912_splice 0.45 TCGA-IR-A3LK-01 9 36063807 36063807 C G RECK Missense_Mutation p.S96C 0.38 deleterious(0.04) possibly_damaging(0.785) TCGA-IR-A3LK-01 9 36204091 36204091 G C CLTA Missense_Mutation p.E134Q 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-IR-A3LK-01 9 36249292 36249292 C G GNE Missense_Mutation p.D52H 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LK-01 9 37955983 37955983 G A SHB Missense_Mutation p.R375C 0.36 deleterious(0) possibly_damaging(0.893) TCGA-IR-A3LK-01 9 3824206 3824206 G A GLIS3 3'Flank 0.41 TCGA-IR-A3LK-01 9 42410417 42410417 G C ANKRD20A2 Missense_Mutation p.E802D 0.36 tolerated(0.1) benign(0.023) TCGA-IR-A3LK-01 9 5300256 5300256 G A RLN2 Missense_Mutation p.R134C 0.48 tolerated(0.18) possibly_damaging(0.761) TCGA-IR-A3LK-01 9 6007497 6007497 G A KIAA2026 Silent p.L97L 0.46 TCGA-IR-A3LK-01 9 6012370 6012370 C T RANBP6 Missense_Mutation p.E1080K 0.43 tolerated(0.66) benign(0.017) TCGA-IR-A3LK-01 9 6256139 6256139 A T IL33 Missense_Mutation p.N262Y 0.36 deleterious(0) probably_damaging(0.991) TCGA-IR-A3LK-01 9 71628379 71628379 G T PRKACG Silent p.I210I 0.44 TCGA-IR-A3LK-01 9 71844105 71844105 C G TJP2 Missense_Mutation p.Q518E 0.39 tolerated(1) benign(0.062) TCGA-IR-A3LK-01 9 72841408 72841408 C T MAMDC2 3'UTR 0.45 TCGA-IR-A3LK-01 9 73001313 73001313 C G KLF9 3'UTR 0.27 TCGA-IR-A3LK-01 9 73027987 73027987 T G KLF9 Missense_Mutation p.D98A 0.48 tolerated(1) benign(0.084) TCGA-IR-A3LK-01 9 73028707 73028707 C G KLF9 5'UTR 0.39 TCGA-IR-A3LK-01 9 75773244 75773244 C T ANXA1 5'UTR 0.53 TCGA-IR-A3LK-01 9 78911633 78911633 G T PCSK5 Missense_Mutation p.M1125I 0.35 tolerated(0.17) benign(0.001) TCGA-IR-A3LK-01 9 78943113 78943113 G A PCSK5 Missense_Mutation p.E1483K 0.35 tolerated(0.47) benign(0.016) TCGA-IR-A3LK-01 9 78968979 78968979 G C PCSK5 Missense_Mutation p.E1673Q 0.30 tolerated(0.29) possibly_damaging(0.546) TCGA-IR-A3LK-01 9 82323635 82323635 C G TLE4 Missense_Mutation p.I399M 0.27 tolerated(0.49) benign(0.01) TCGA-IR-A3LK-01 9 88916443 88916443 C G ZCCHC6 Missense_Mutation p.E1390Q 0.34 tolerated(0.05) possibly_damaging(0.756) TCGA-IR-A3LK-01 9 91974408 91974408 G C SECISBP2 3'UTR 0.43 TCGA-IR-A3LK-01 9 95610246 95610246 C T ZNF484 Missense_Mutation p.E277K 0.38 tolerated(0.15) benign(0.318) TCGA-IR-A3LK-01 9 95776211 95776211 G C FGD3 Silent p.L371L 0.44 TCGA-IR-A3LK-01 9 95838224 95838224 G C SUSD3 Missense_Mutation p.E83Q 0.42 tolerated(0.84) possibly_damaging(0.88) TCGA-IR-A3LK-01 X 10035326 10035326 G C WWC3 Splice_Site p.X6_splice 0.37 TCGA-IR-A3LK-01 X 100910723 100910723 C T ARMCX2 Missense_Mutation p.D618N 0.38 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 X 102006108 102006108 C G BHLHB9 3'UTR 0.39 TCGA-IR-A3LK-01 X 103216840 103216840 G C TMSB15B 5'Flank 0.41 TCGA-IR-A3LK-01 X 105876458 105876458 G A CXorf57 Missense_Mutation p.E427K 0.53 deleterious(0.01) possibly_damaging(0.864) TCGA-IR-A3LK-01 X 107148838 107148839 - A MID2 Frame_Shift_Ins p.N354Kfs*4 0.15 TCGA-IR-A3LK-01 X 110002983 110002983 C T CHRDL1 Splice_Site p.X70_splice 0.36 TCGA-IR-A3LK-01 X 111195357 111195357 C T TRPC5 Missense_Mutation p.D98N 0.54 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 X 115582693 115582693 C G SLC6A14 Missense_Mutation p.F339L 0.37 deleterious(0) probably_damaging(1) TCGA-IR-A3LK-01 X 117783038 117783038 G C DOCK11 Missense_Mutation p.R1510T 0.40 deleterious(0) probably_damaging(0.991) TCGA-IR-A3LK-01 X 118724223 118724223 C T NKRF Missense_Mutation p.E404K 0.07 deleterious(0.02) possibly_damaging(0.834) TCGA-IR-A3LK-01 X 118894037 118894037 G T SOWAHD 3'UTR 0.41 TCGA-IR-A3LK-01 X 119007294 119007294 C A NDUFA1 Missense_Mutation p.H44N 0.12 deleterious(0.02) benign(0.017) TCGA-IR-A3LK-01 X 122387269 122387269 C G GRIA3 Missense_Mutation p.S128R 0.35 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LK-01 X 122387377 122387377 C T GRIA3 Silent p.L164L 0.38 TCGA-IR-A3LK-01 X 124029919 124029919 G A TENM1 Missense_Mutation p.S130L 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IR-A3LK-01 X 125298775 125298775 C T DCAF12L2 Missense_Mutation p.R378H 0.42 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 X 125299005 125299005 G A DCAF12L2 Silent p.I301I 0.39 TCGA-IR-A3LK-01 X 129149328 129149328 C T BCORL1 Silent p.I860I 0.39 TCGA-IR-A3LK-01 X 129499593 129499593 G C SLC25A14 Missense_Mutation p.Q266H 0.46 deleterious(0.02) benign(0.33) TCGA-IR-A3LK-01 X 129535995 129535995 G C RBMX2 5'UTR 0.49 TCGA-IR-A3LK-01 X 131207060 131207060 G A MST4 Missense_Mutation p.E389K 0.35 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-IR-A3LK-01 X 131351213 131351213 G A RAP2C Silent p.F28F 0.29 TCGA-IR-A3LK-01 X 134483047 134483047 G A ZNF449 Missense_Mutation p.D123N 0.28 tolerated(0.12) benign(0.031) TCGA-IR-A3LK-01 X 134989560 134989560 G A SAGE1 Silent p.V322V 0.28 TCGA-IR-A3LK-01 X 135067841 135067841 G C SLC9A6 Missense_Mutation p.E60D 0.28 tolerated(0.36) probably_damaging(0.995) TCGA-IR-A3LK-01 X 13779289 13779289 C T OFD1 Silent p.L782L 0.40 TCGA-IR-A3LK-01 X 147011666 147011666 C G FMR1 Nonsense_Mutation p.S178* 0.33 TCGA-IR-A3LK-01 X 148564588 148564588 C T IDS Missense_Mutation p.E237K 0.46 tolerated(0.56) benign(0.008) TCGA-IR-A3LK-01 X 149931379 149931379 C A MTMR1 3'UTR 0.43 TCGA-IR-A3LK-01 X 150891317 150891317 C T FATE1 3'UTR 0.28 TCGA-IR-A3LK-01 X 152772340 152772340 C T BGN Silent p.A243A 0.27 TCGA-IR-A3LK-01 X 152991176 152991176 G A ABCD1 Missense_Mutation p.R152H 0.37 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LK-01 X 153069804 153069804 C G PDZD4 Missense_Mutation p.E438D 0.33 tolerated(0.43) benign(0.013) TCGA-IR-A3LK-01 X 153186238 153186238 G C ARHGAP4 Missense_Mutation p.H175D 0.50 deleterious(0) possibly_damaging(0.71) TCGA-IR-A3LK-01 X 153581031 153581031 G T FLNA Missense_Mutation p.S2131Y 0.38 deleterious(0) benign(0.338) TCGA-IR-A3LK-01 X 153582057 153582057 C G FLNA Missense_Mutation p.E1909Q 0.48 deleterious(0) possibly_damaging(0.741) TCGA-IR-A3LK-01 X 153582329 153582329 C G FLNA Silent p.V1880V 0.43 TCGA-IR-A3LK-01 X 15376224 15376224 G T FIGF Missense_Mutation p.F131L 0.33 deleterious(0.01) possibly_damaging(0.881) TCGA-IR-A3LK-01 X 154221309 154221309 G C F8 Missense_Mutation p.S168C 0.27 tolerated(0.06) probably_damaging(0.951) TCGA-IR-A3LK-01 X 154306951 154306951 C T BRCC3 Missense_Mutation p.H126Y 0.44 deleterious(0) probably_damaging(0.985) TCGA-IR-A3LK-01 X 1584669 1584669 G A P2RY8 Silent p.I261I 0.10 TCGA-IR-A3LK-01 X 18622091 18622091 G A CDKL5 Silent p.L349L 0.29 TCGA-IR-A3LK-01 X 19372691 19372691 C A PDHA1 Missense_Mutation p.A236D 0.40 deleterious(0) probably_damaging(0.977) TCGA-IR-A3LK-01 X 19935399 19935399 C T CXorf23 3'UTR 0.26 TCGA-IR-A3LK-01 X 24717569 24717569 C G POLA1 Missense_Mutation p.S18C 0.36 deleterious(0.01) benign(0.054) TCGA-IR-A3LK-01 X 30326419 30326419 G A NR0B1 Silent p.S354S 0.49 TCGA-IR-A3LK-01 X 32360327 32360327 C T DMD Missense_Mutation p.E1938K 0.30 benign(0.003) TCGA-IR-A3LK-01 X 35821128 35821128 G A MAGEB16 Missense_Mutation p.R272Q 0.40 tolerated(0.55) benign(0.001) TCGA-IR-A3LK-01 X 35966468 35966468 C T CXorf22 Silent p.I185I 0.36 TCGA-IR-A3LK-01 X 38146058 38146058 C A RPGR Nonsense_Mutation p.E732* 0.35 TCGA-IR-A3LK-01 X 43698186 43698186 C G MAOB Missense_Mutation p.L69F 0.45 tolerated(0.09) possibly_damaging(0.5) TCGA-IR-A3LK-01 X 46332604 46332604 C G KRBOX4 3'UTR 0.24 TCGA-IR-A3LK-01 X 47089053 47089053 C G CDK16 3'UTR 0.53 TCGA-IR-A3LK-01 X 47308716 47308716 C T ZNF41 Silent p.Q151Q 0.45 TCGA-IR-A3LK-01 X 47308802 47308802 G C ZNF41 Missense_Mutation p.Q123E 0.39 tolerated(0.99) benign(0.225) TCGA-IR-A3LK-01 X 48458940 48458940 C T WDR13 Nonsense_Mutation p.R253* 0.43 TCGA-IR-A3LK-01 X 48629375 48629375 G C GLOD5 Missense_Mutation p.Q78H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LK-01 X 48760501 48760501 G C SLC35A2 3'UTR 0.41 TCGA-IR-A3LK-01 X 49022575 49022575 C T MAGIX Missense_Mutation p.T281M 0.32 tolerated(0.06) benign(0.132) TCGA-IR-A3LK-01 X 49034710 49034710 C G PRICKLE3 Missense_Mutation p.D227H 0.41 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LK-01 X 49858017 49858017 G C CLCN5 3'UTR 0.41 TCGA-IR-A3LK-01 X 49861324 49861324 G A CLCN5 3'UTR 0.44 TCGA-IR-A3LK-01 X 53588727 53588727 G C HUWE1 Missense_Mutation p.F2499L 0.38 benign(0.153) TCGA-IR-A3LK-01 X 53589104 53589104 C T HUWE1 Missense_Mutation p.E2436K 0.43 benign(0.292) TCGA-IR-A3LK-01 X 53655822 53655822 G C HUWE1 Missense_Mutation p.T332R 0.50 probably_damaging(1) TCGA-IR-A3LK-01 X 57618397 57618397 C T ZXDB 5'UTR 0.33 TCGA-IR-A3LK-01 X 63407235 63407235 G C AMER1 3'UTR 0.22 TCGA-IR-A3LK-01 X 64725616 64725616 G A ZC3H12B 3'UTR 0.57 TCGA-IR-A3LK-01 X 69177047 69177047 G A EDA Intron 0.28 TCGA-IR-A3LK-01 X 69561767 69561767 G C KIF4A Missense_Mutation p.E418Q 0.30 deleterious(0) possibly_damaging(0.774) TCGA-IR-A3LK-01 X 70346188 70346188 C G MED12 Intron 0.21 TCGA-IR-A3LK-01 X 70832407 70832407 G A ACRC Silent p.T651T 0.20 TCGA-IR-A3LK-01 X 73065497 73065497 G A XIST RNA 0.17 TCGA-IR-A3LK-01 X 74295395 74295395 C G ABCB7 Missense_Mutation p.Q220H 0.68 tolerated(0.08) benign(0.329) TCGA-IR-A3LK-01 X 75649466 75649466 G A MAGEE1 Silent p.P381P 0.17 TCGA-IR-A3LK-01 X 76760529 76760529 G C ATRX 3'UTR 0.09 TCGA-IR-A3LK-01 X 76762744 76762744 C T ATRX 3'UTR 0.14 TCGA-IR-A3LK-01 X 84586012 84586012 C T POF1B Missense_Mutation p.R266H 0.46 deleterious(0.05) probably_damaging(0.999) TCGA-IR-A3LK-01 X 85117273 85117273 C G CHM 3'UTR 0.57 TCGA-IR-A3LK-01 X 90690684 90690684 G A PABPC5 Silent p.K36K 0.40 TCGA-IR-A3LK-01 X 91133194 91133194 C T PCDH11X Missense_Mutation p.S652L 0.36 deleterious(0) possibly_damaging(0.665) TCGA-IR-A3LL-01 10 102035036 102035036 C T BLOC1S2 3'UTR 0.18 TCGA-IR-A3LL-01 10 102035038 102035038 C T BLOC1S2 3'UTR 0.19 TCGA-IR-A3LL-01 10 103577777 103577777 C T MGEA5 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-IR-A3LL-01 10 104129049 104129049 C T GBF1 Missense_Mutation p.R1018C 0.29 deleterious(0.01) possibly_damaging(0.772) TCGA-IR-A3LL-01 10 104174660 104174660 C T PSD Missense_Mutation p.D362N 0.19 deleterious(0.01) benign(0.326) TCGA-IR-A3LL-01 10 104679239 104679239 C G CNNM2 Silent p.L334L 0.17 TCGA-IR-A3LL-01 10 105048215 105048215 G A INA Missense_Mutation p.R430K 0.19 tolerated(0.39) benign(0.206) TCGA-IR-A3LL-01 10 105107191 105107191 G C PCGF6 Missense_Mutation p.Q192E 0.23 deleterious(0.01) benign(0.217) TCGA-IR-A3LL-01 10 105356267 105356267 G A SH3PXD2A 3'UTR 0.28 TCGA-IR-A3LL-01 10 105815621 105815621 C T COL17A1 Missense_Mutation p.D536N 0.28 unknown(0) TCGA-IR-A3LL-01 10 106014929 106014929 C A GSTO1 Missense_Mutation p.P15T 0.34 tolerated(0.06) benign(0.021) TCGA-IR-A3LL-01 10 11523855 11523855 A T USP6NL Missense_Mutation p.F348Y 0.29 deleterious(0.03) possibly_damaging(0.8) TCGA-IR-A3LL-01 10 11971866 11971866 C T UPF2 Silent p.G1269G 0.14 TCGA-IR-A3LL-01 10 11971934 11971934 C T UPF2 Missense_Mutation p.E1247K 0.19 tolerated(0.1) benign(0.039) TCGA-IR-A3LL-01 10 11994167 11994167 C G UPF2 Missense_Mutation p.D978H 0.33 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LL-01 10 127760112 127760112 G A ADAM12 Silent p.F422F 0.50 TCGA-IR-A3LL-01 10 13685712 13685712 C T FRMD4A 3'UTR 0.21 TCGA-IR-A3LL-01 10 33218789 33218789 G C ITGB1 Missense_Mutation p.Q113E 0.16 deleterious(0.01) benign(0.12) TCGA-IR-A3LL-01 10 35500224 35500224 C T CREM Intron 0.26 TCGA-IR-A3LL-01 10 38499721 38499721 G A RP11-508N22.8 RNA 0.10 TCGA-IR-A3LL-01 10 47000501 47000501 G C GPRIN2 3'UTR 0.14 TCGA-IR-A3LL-01 10 47087122 47087122 C T NPY4R Silent p.L113L 0.10 TCGA-IR-A3LL-01 10 61006216 61006216 G A FAM13C 3'UTR 0.16 TCGA-IR-A3LL-01 10 61832718 61832718 C T ANK3 Missense_Mutation p.A2641T 0.24 benign(0) TCGA-IR-A3LL-01 10 64974005 64974005 G A JMJD1C Missense_Mutation p.S641L 0.16 tolerated_low_confidence(0.15) benign(0.016) TCGA-IR-A3LL-01 10 64974350 64974350 G A JMJD1C Missense_Mutation p.S526L 0.20 deleterious_low_confidence(0.02) benign(0.002) TCGA-IR-A3LL-01 10 70706393 70706393 G C DDX50 3'UTR 0.53 TCGA-IR-A3LL-01 10 7842008 7842008 G A ATP5C1 Silent p.K197K 0.50 TCGA-IR-A3LL-01 10 89552437 89552437 G A ATAD1 Missense_Mutation p.L80F 0.29 tolerated(0.08) possibly_damaging(0.728) TCGA-IR-A3LL-01 10 90492212 90492212 G A LIPK Silent p.K191K 0.47 TCGA-IR-A3LL-01 11 108153542 108153542 G A ATM Missense_Mutation p.E1228K 0.20 tolerated(0.42) benign(0.001) TCGA-IR-A3LL-01 11 10822077 10822077 G A EIF4G2 Silent p.L588L 0.39 TCGA-IR-A3LL-01 11 10822081 10822081 G A EIF4G2 Silent p.I586I 0.41 TCGA-IR-A3LL-01 11 108811173 108811173 C A DDX10 3'UTR 0.32 TCGA-IR-A3LL-01 11 1092256 1092256 G A MUC2 Missense_Mutation p.V1359I 0.25 possibly_damaging(0.74) TCGA-IR-A3LL-01 11 110030151 110030151 G C ZC3H12C Missense_Mutation p.E362Q 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-IR-A3LL-01 11 119057178 119057178 C T PDZD3 Intron 0.33 TCGA-IR-A3LL-01 11 120350709 120350709 G A ARHGEF12 Silent p.L1269L 0.45 TCGA-IR-A3LL-01 11 123484181 123484181 C T GRAMD1B Missense_Mutation p.T538M 0.35 tolerated(0.18) benign(0.003) TCGA-IR-A3LL-01 11 123601372 123601372 C T ZNF202 Silent p.L75L 0.35 TCGA-IR-A3LL-01 11 126120401 126120401 C T FAM118B Missense_Mutation p.R114C 0.40 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LL-01 11 13399978 13399978 C T ARNTL Silent p.I502I 0.21 TCGA-IR-A3LL-01 11 431747 431747 C G ANO9 Missense_Mutation p.K162N 0.55 tolerated(0.24) benign(0.004) TCGA-IR-A3LL-01 11 4824913 4824913 G A OR52R1 Missense_Mutation p.S233L 0.29 deleterious(0) possibly_damaging(0.672) TCGA-IR-A3LL-01 11 49228337 49228337 C G FOLH1 Intron 0.26 TCGA-IR-A3LL-01 11 57466416 57466416 C T ZDHHC5 Missense_Mutation p.S503L 0.26 deleterious(0.01) possibly_damaging(0.804) TCGA-IR-A3LL-01 11 60689679 60689679 G A TMEM109 3'UTR 0.41 TCGA-IR-A3LL-01 11 61563334 61563334 G A FEN1 Silent p.V167V 0.45 TCGA-IR-A3LL-01 11 62566102 62566102 G T NXF1 Intron 0.18 TCGA-IR-A3LL-01 11 65395032 65395032 C T PCNXL3 Silent p.L1227L 0.23 TCGA-IR-A3LL-01 11 65427656 65427656 C T RELA Silent p.K122K 0.07 TCGA-IR-A3LL-01 11 6650967 6650967 G C DCHS1 Silent p.L1657L 0.21 TCGA-IR-A3LL-01 11 66999336 66999336 C T KDM2A Missense_Mutation p.R462C 0.10 deleterious(0.01) benign(0.394) TCGA-IR-A3LL-01 11 6738144 6738144 T C GVINP1 RNA 0.13 TCGA-IR-A3LL-01 11 68542829 68542829 C T CPT1A Silent p.P510P 0.16 TCGA-IR-A3LL-01 11 72470394 72470394 C G STARD10 Missense_Mutation p.E80D 0.27 tolerated(0.17) benign(0.012) TCGA-IR-A3LL-01 11 76062771 76062771 A G PRKRIR Missense_Mutation p.S475P 0.40 deleterious(0.03) benign(0.001) TCGA-IR-A3LL-01 11 77458164 77458164 C G RSF1 Missense_Mutation p.E97Q 0.18 deleterious(0) possibly_damaging(0.755) TCGA-IR-A3LL-01 11 89424627 89424627 C G FOLH1B RNA 0.27 TCGA-IR-A3LL-01 12 101493441 101493441 G A ANO4 Missense_Mutation p.D663N 0.27 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LL-01 12 101769493 101769493 T G UTP20 Missense_Mutation p.I2452S 0.19 deleterious(0.02) benign(0.06) TCGA-IR-A3LL-01 12 10854632 10854632 C A YBX3 Missense_Mutation p.R327L 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-IR-A3LL-01 12 116398780 116398780 T C MED13L 3'UTR 0.15 TCGA-IR-A3LL-01 12 120173073 120173073 G A CIT Silent p.L1016L 0.26 TCGA-IR-A3LL-01 12 121438965 121438965 C T HNF1A Silent p.I622I 0.17 TCGA-IR-A3LL-01 12 123413642 123413642 G C ABCB9 3'UTR 0.35 TCGA-IR-A3LL-01 12 123888168 123888168 G A SETD8 Missense_Mutation p.E216K 0.33 deleterious(0) benign(0.279) TCGA-IR-A3LL-01 12 124821320 124821320 C G NCOR2 Missense_Mutation p.E2032Q 0.21 probably_damaging(0.958) TCGA-IR-A3LL-01 12 125398044 125398044 C G UBC Missense_Mutation p.E92Q 0.21 deleterious(0) possibly_damaging(0.87) TCGA-IR-A3LL-01 12 132284171 132284171 G C SFSWAP 3'Flank 0.28 TCGA-IR-A3LL-01 12 14993819 14993819 C G ART4 Missense_Mutation p.R138T 0.18 tolerated(0.6) benign(0.02) TCGA-IR-A3LL-01 12 29631791 29631791 C T OVCH1 Missense_Mutation p.R349Q 0.37 tolerated(0.36) benign(0) TCGA-IR-A3LL-01 12 30863277 30863277 T A CAPRIN2 Silent p.A931A 0.33 TCGA-IR-A3LL-01 12 33528866 33528866 C G SYT10 3'UTR 0.21 TCGA-IR-A3LL-01 12 3703117 3703117 C G PRMT8 3'UTR 0.23 TCGA-IR-A3LL-01 12 3757688 3757688 G C EFCAB4B Intron 0.25 TCGA-IR-A3LL-01 12 49161715 49161715 C G ADCY6 3'UTR 0.19 TCGA-IR-A3LL-01 12 49434544 49434544 G C KMT2D Missense_Mutation p.Q2337E 0.24 probably_damaging(0.966) TCGA-IR-A3LL-01 12 49434618 49434618 G C KMT2D Nonsense_Mutation p.S2312* 0.32 TCGA-IR-A3LL-01 12 49435470 49435470 G A KMT2D Missense_Mutation p.R2068W 0.21 probably_damaging(0.999) TCGA-IR-A3LL-01 12 49438611 49438611 C T KMT2D Missense_Mutation p.E1627K 0.26 possibly_damaging(0.872) TCGA-IR-A3LL-01 12 49440150 49440150 C T KMT2D Silent p.Q1492Q 0.16 TCGA-IR-A3LL-01 12 49442510 49442510 C T KMT2D Missense_Mutation p.E1355K 0.18 possibly_damaging(0.872) TCGA-IR-A3LL-01 12 49442540 49442540 C G KMT2D Missense_Mutation p.D1345H 0.35 probably_damaging(0.974) TCGA-IR-A3LL-01 12 49442546 49442546 C T KMT2D Missense_Mutation p.D1343N 0.17 probably_damaging(0.995) TCGA-IR-A3LL-01 12 52387888 52387888 G A ACVR1B Silent p.K545K 0.16 TCGA-IR-A3LL-01 12 56559231 56559231 G C SMARCC2 Missense_Mutation p.P1004A 0.16 tolerated(0.5) unknown(0) TCGA-IR-A3LL-01 12 56559333 56559333 G A SMARCC2 Nonsense_Mutation p.Q970* 0.21 TCGA-IR-A3LL-01 12 5908678 5908678 G A ANO2 Silent p.L346L 0.13 TCGA-IR-A3LL-01 12 62996718 62996718 C T C12orf61 3'UTR 0.33 TCGA-IR-A3LL-01 12 70747917 70747917 G C CNOT2 3'UTR 0.14 TCGA-IR-A3LL-01 12 72021566 72021566 G C ZFC3H1 Silent p.L1365L 0.20 TCGA-IR-A3LL-01 12 7252370 7252370 G A C1RL Intron 0.22 TCGA-IR-A3LL-01 12 73046213 73046213 G A TRHDE Silent p.E884E 0.24 TCGA-IR-A3LL-01 12 88910219 88910219 C T KITLG Missense_Mutation p.E138K 0.46 tolerated(0.18) possibly_damaging(0.691) TCGA-IR-A3LL-01 12 89917415 89917415 G C GALNT4 Missense_Mutation p.I304M 0.11 deleterious(0) possibly_damaging(0.636) TCGA-IR-A3LL-01 12 9713515 9713515 G T RP11-726G1.1 RNA 0.24 TCGA-IR-A3LL-01 13 103384590 103384590 G A CCDC168 Missense_Mutation p.R1524C 0.27 deleterious(0.01) unknown(0) TCGA-IR-A3LL-01 13 108518440 108518440 C A FAM155A Nonsense_Mutation p.E169* 0.28 TCGA-IR-A3LL-01 13 20000617 20000617 A G TPTE2 Missense_Mutation p.V448A 0.29 deleterious(0.01) benign(0.339) TCGA-IR-A3LL-01 13 25262603 25262603 C G ATP12A Silent p.L125L 0.13 TCGA-IR-A3LL-01 13 29041146 29041146 C G FLT1 Missense_Mutation p.L94F 0.24 deleterious(0) probably_damaging(0.986) TCGA-IR-A3LL-01 13 31037403 31037403 G A HMGB1 Silent p.I79I 0.14 TCGA-IR-A3LL-01 13 31205020 31205020 G A USPL1 Missense_Mutation p.D93N 0.30 deleterious(0.02) probably_damaging(0.978) TCGA-IR-A3LL-01 13 73636078 73636078 G T KLF5 Missense_Mutation p.R114L 0.26 deleterious(0) probably_damaging(0.931) TCGA-IR-A3LL-01 14 105258937 105258937 C T AKT1 Missense_Mutation p.R15Q 0.18 tolerated(0.08) benign(0.006) TCGA-IR-A3LL-01 14 105608248 105608248 C T JAG2 3'UTR 0.43 TCGA-IR-A3LL-01 14 20842653 20842653 C G TEP1 Missense_Mutation p.E2136Q 0.23 tolerated(0.67) benign(0.011) TCGA-IR-A3LL-01 14 23548958 23548958 G C ACIN1 Missense_Mutation p.S587C 0.21 probably_damaging(0.995) TCGA-IR-A3LL-01 14 24429148 24429148 C G DHRS4 Missense_Mutation p.S115C 0.19 tolerated(0.43) benign(0.215) TCGA-IR-A3LL-01 14 31782183 31782183 G A AL136418.1 3'Flank 0.11 TCGA-IR-A3LL-01 14 38724060 38724060 G A CLEC14A Nonsense_Mutation p.Q390* 0.24 TCGA-IR-A3LL-01 14 45431568 45431568 C G FAM179B 5'UTR 0.09 TCGA-IR-A3LL-01 14 54417513 54417513 G C BMP4 Missense_Mutation p.S155C 0.38 deleterious(0.01) probably_damaging(0.95) TCGA-IR-A3LL-01 14 59113006 59113006 C T DACT1 Silent p.V555V 0.25 TCGA-IR-A3LL-01 14 64006361 64006361 C G PPP2R5E Missense_Mutation p.D15H 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-IR-A3LL-01 14 68264470 68264470 C G ZFYVE26 Missense_Mutation p.E751Q 0.12 tolerated(0.39) benign(0.295) TCGA-IR-A3LL-01 14 72128168 72128168 G A SIPA1L1 Missense_Mutation p.D747N 0.19 deleterious(0.01) benign(0.346) TCGA-IR-A3LL-01 14 75516266 75516266 G A MLH3 Silent p.L31L 0.33 TCGA-IR-A3LL-01 14 80971314 80971314 G A CEP128 Missense_Mutation p.S1041L 0.27 deleterious(0) possibly_damaging(0.714) TCGA-IR-A3LL-01 14 89341385 89341385 C T TTC8 Nonsense_Mutation p.Q455* 0.19 TCGA-IR-A3LL-01 15 31202979 31202979 G A FAN1 Missense_Mutation p.G513D 0.07 tolerated(0.08) benign(0.085) TCGA-IR-A3LL-01 15 43821015 43821015 C T MAP1A Silent p.L2448L 0.41 TCGA-IR-A3LL-01 15 58920052 58920052 C G ADAM10 Missense_Mutation p.E403Q 0.42 tolerated(0.07) probably_damaging(0.954) TCGA-IR-A3LL-01 15 59911592 59911592 C T GCNT3 Silent p.I385I 0.28 TCGA-IR-A3LL-01 15 59934407 59934407 C T GTF2A2 Missense_Mutation p.D78N 0.21 tolerated(0.65) benign(0.06) TCGA-IR-A3LL-01 15 75760039 75760039 C A PTPN9 3'UTR 0.41 TCGA-IR-A3LL-01 15 75760807 75760807 C A PTPN9 3'UTR 0.27 TCGA-IR-A3LL-01 15 76069745 76069745 G A RP11-24M17.5 RNA 0.17 TCGA-IR-A3LL-01 15 78486929 78486929 G C ACSBG1 Missense_Mutation p.F124L 0.18 tolerated(0.64) benign(0.064) TCGA-IR-A3LL-01 15 79327552 79327552 G A RASGRF1 Silent p.S293S 0.24 TCGA-IR-A3LL-01 15 80467429 80467429 G A FAH Silent p.L303L 0.28 TCGA-IR-A3LL-01 15 83876192 83876192 C G HDGFRP3 5'UTR 0.27 TCGA-IR-A3LL-01 15 88680693 88680693 G A NTRK3 Silent p.Y188Y 0.24 TCGA-IR-A3LL-01 15 89743712 89743712 G C ABHD2 3'UTR 0.23 TCGA-IR-A3LL-01 15 90983760 90983760 G A IQGAP1 Missense_Mutation p.E188K 0.35 deleterious(0) possibly_damaging(0.838) TCGA-IR-A3LL-01 15 96880846 96880846 C T NR2F2 Nonsense_Mutation p.Q414* 0.21 TCGA-IR-A3LL-01 16 11966812 11966812 C T GSPT1 3'UTR 0.23 TCGA-IR-A3LL-01 16 1262079 1262079 C T CACNA1H Missense_Mutation p.A1567V 0.31 tolerated(0.11) probably_damaging(0.994) TCGA-IR-A3LL-01 16 16349979 16349979 C G NOMO3 Missense_Mutation p.P395R 0.05 deleterious(0) possibly_damaging(0.532) TCGA-IR-A3LL-01 16 18804601 18804601 G C ARL6IP1 Silent p.L195L 0.18 TCGA-IR-A3LL-01 16 20348020 20348020 C T UMOD Silent p.G590G 0.10 TCGA-IR-A3LL-01 16 20380942 20380942 C T PDILT Missense_Mutation p.E330K 0.17 tolerated(0.16) benign(0.034) TCGA-IR-A3LL-01 16 21218209 21218209 C T ZP2 Missense_Mutation p.E145K 0.25 tolerated(0.11) benign(0.017) TCGA-IR-A3LL-01 16 2136841 2136841 C T TSC2 Missense_Mutation p.S1653F 0.29 deleterious(0) probably_damaging(1) TCGA-IR-A3LL-01 16 27480781 27480781 C T GTF3C1 Silent p.V1635V 0.18 TCGA-IR-A3LL-01 16 29376108 29376108 G C SNX29P2 RNA 0.25 TCGA-IR-A3LL-01 16 2979652 2979652 G C FLYWCH1 5'UTR 0.22 TCGA-IR-A3LL-01 16 30937143 30937143 G A FBXL19 Missense_Mutation p.R43Q 0.41 tolerated(0.18) possibly_damaging(0.553) TCGA-IR-A3LL-01 16 336832 336832 C G PDIA2 Intron 0.39 TCGA-IR-A3LL-01 16 4242627 4242627 C T SRL Missense_Mutation p.D317N 0.30 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LL-01 16 4674988 4674988 C G MGRN1 Missense_Mutation p.I9M 0.25 tolerated(0.25) probably_damaging(0.982) TCGA-IR-A3LL-01 16 53503923 53503923 G A RBL2 Missense_Mutation p.D691N 0.22 tolerated(0.12) benign(0.002) TCGA-IR-A3LL-01 16 57417119 57417119 G C CX3CL1 3'UTR 0.44 TCGA-IR-A3LL-01 16 67264035 67264035 G T FHOD1 Missense_Mutation p.H1050N 0.29 deleterious(0) benign(0.407) TCGA-IR-A3LL-01 16 67264118 67264118 G C FHOD1 Nonsense_Mutation p.S1022* 0.17 TCGA-IR-A3LL-01 16 67697103 67697103 G C ENKD1 Missense_Mutation p.I334M 0.17 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LL-01 16 67863860 67863860 C G CENPT Missense_Mutation p.E332Q 0.18 tolerated(0.11) possibly_damaging(0.709) TCGA-IR-A3LL-01 16 683820 683820 C T WFIKKN1 Silent p.L470L 0.22 TCGA-IR-A3LL-01 16 69354623 69354623 C T VPS4A Missense_Mutation p.L268F 0.35 deleterious(0) probably_damaging(0.986) TCGA-IR-A3LL-01 16 70590890 70590890 G A SF3B3 Silent p.E656E 0.28 TCGA-IR-A3LL-01 16 71408656 71408656 G C CALB2 Missense_Mutation p.K60N 0.21 tolerated(0.43) benign(0.309) TCGA-IR-A3LL-01 16 744329 744329 G A FBXL16 Silent p.P462P 0.42 TCGA-IR-A3LL-01 16 74537580 74537580 C T GLG1 Missense_Mutation p.R208Q 0.29 tolerated(0.12) possibly_damaging(0.859) TCGA-IR-A3LL-01 16 75338968 75338968 C T CFDP1 Missense_Mutation p.E255K 0.28 deleterious(0) probably_damaging(0.993) TCGA-IR-A3LL-01 16 76486529 76486529 G A CNTNAP4 Missense_Mutation p.R326Q 0.12 deleterious(0.02) possibly_damaging(0.867) TCGA-IR-A3LL-01 16 822892 822892 C T MSLNL Missense_Mutation p.E765K 0.24 benign(0.171) TCGA-IR-A3LL-01 16 84034404 84034404 G C NECAB2 Missense_Mutation p.K346N 0.25 tolerated(0.34) probably_damaging(0.979) TCGA-IR-A3LL-01 16 89627875 89627875 G C RPL13 Intron 0.20 TCGA-IR-A3LL-01 17 12639475 12639475 C T MYOCD Intron 0.41 TCGA-IR-A3LL-01 17 15641633 15641633 C T TBC1D26 Missense_Mutation p.R107W 0.28 deleterious(0.05) benign(0.008) TCGA-IR-A3LL-01 17 1782335 1782335 C G RPA1 Missense_Mutation p.P247A 0.31 tolerated(0.25) benign(0.016) TCGA-IR-A3LL-01 17 18891557 18891557 C G FAM83G Intron 0.25 TCGA-IR-A3LL-01 17 26696313 26696313 G A VTN Silent p.F222F 0.38 TCGA-IR-A3LL-01 17 29661936 29661936 G A NF1 Missense_Mutation p.D1965N 0.24 tolerated(0.09) probably_damaging(0.98) TCGA-IR-A3LL-01 17 34072551 34072551 G A GAS2L2 Silent p.I655I 0.27 TCGA-IR-A3LL-01 17 34173956 34173956 T C TAF15 3'UTR 0.15 TCGA-IR-A3LL-01 17 34328559 34328559 G A CCL15 5'UTR 0.21 TCGA-IR-A3LL-01 17 37421664 37421664 G A FBXL20 Nonsense_Mutation p.R326* 0.20 TCGA-IR-A3LL-01 17 38711120 38711120 G C CCR7 Silent p.L337L 0.23 TCGA-IR-A3LL-01 17 38711534 38711534 G C CCR7 Silent p.L199L 0.25 TCGA-IR-A3LL-01 17 40255628 40255628 G C DHX58 Missense_Mutation p.F584L 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-IR-A3LL-01 17 40555498 40555498 C G PTRF 3'UTR 0.17 TCGA-IR-A3LL-01 17 48784890 48784890 G C ANKRD40 Silent p.V42V 0.23 TCGA-IR-A3LL-01 17 5086046 5086046 G C ZNF594 Silent p.L502L 0.13 TCGA-IR-A3LL-01 17 57742163 57742163 G A CLTC Missense_Mutation p.D513N 0.34 tolerated(0.11) probably_damaging(0.999) TCGA-IR-A3LL-01 17 58292072 58292072 C A USP32 Missense_Mutation p.R644L 0.24 deleterious(0.01) benign(0.066) TCGA-IR-A3LL-01 17 60039009 60039009 C T MED13 Silent p.V1732V 0.39 TCGA-IR-A3LL-01 17 61894305 61894305 G A DDX42 Silent p.T697T 0.26 TCGA-IR-A3LL-01 17 61972547 61972547 C G CSH1 Missense_Mutation p.Q163H 0.24 deleterious(0.05) benign(0.003) TCGA-IR-A3LL-01 17 64800031 64800031 G A PRKCA Missense_Mutation p.R632Q 0.18 tolerated(0.07) benign(0.038) TCGA-IR-A3LL-01 17 65714108 65714108 G C NOL11 Silent p.L15L 0.17 TCGA-IR-A3LL-01 17 71281696 71281696 G A CDC42EP4 Missense_Mutation p.S315L 0.28 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LL-01 17 729296 729296 C T NXN Missense_Mutation p.R128Q 0.25 deleterious(0.02) possibly_damaging(0.454) TCGA-IR-A3LL-01 17 73753689 73753689 C G ITGB4 3'UTR 0.26 TCGA-IR-A3LL-01 17 7480675 7480675 C T EIF4A1 Missense_Mutation p.S213L 0.18 deleterious(0) probably_damaging(1) TCGA-IR-A3LL-01 17 79633772 79633772 C T CCDC137 5'UTR 0.40 TCGA-IR-A3LL-01 17 80972369 80972369 C T B3GNTL1 Silent p.V123V 0.22 TCGA-IR-A3LL-01 17 8354172 8354172 C G NDEL1 Missense_Mutation p.L201V 0.50 tolerated(0.51) benign(0.248) TCGA-IR-A3LL-01 18 14124346 14124346 C T ZNF519 Intron 0.26 TCGA-IR-A3LL-01 18 15323319 15323319 C T RNU6-721P 5'Flank 0.22 TCGA-IR-A3LL-01 18 30350522 30350522 G A KLHL14 Silent p.F11F 0.45 TCGA-IR-A3LL-01 18 49867236 49867236 C T DCC Missense_Mutation p.L27F 0.21 tolerated(0.48) benign(0.001) TCGA-IR-A3LL-01 18 54605880 54605880 G C WDR7 Missense_Mutation p.K1316N 0.22 deleterious(0) probably_damaging(0.972) TCGA-IR-A3LL-01 18 55158195 55158195 G A ONECUT2 3'UTR 0.17 TCGA-IR-A3LL-01 18 61324221 61324221 C G SERPINB3 Splice_Site p.X205_splice 0.35 TCGA-IR-A3LL-01 18 61377475 61377475 C G SERPINB11 Missense_Mutation p.F16L 0.28 tolerated(0.07) benign(0.073) TCGA-IR-A3LL-01 18 61377519 61377519 C G SERPINB11 Missense_Mutation p.S31C 0.32 deleterious(0.01) probably_damaging(1) TCGA-IR-A3LL-01 18 72187433 72187433 G A CNDP2 3'UTR 0.18 TCGA-IR-A3LL-01 19 1043092 1043092 G A ABCA7 Missense_Mutation p.R211Q 0.13 tolerated(0.67) benign(0.002) TCGA-IR-A3LL-01 19 13928068 13928068 G A ZSWIM4 Missense_Mutation p.E407K 0.16 deleterious(0.02) unknown(0) TCGA-IR-A3LL-01 19 14200004 14200004 C T SAMD1 Silent p.E269E 0.15 TCGA-IR-A3LL-01 19 15272415 15272415 C T NOTCH3 Silent p.P2008P 0.27 TCGA-IR-A3LL-01 19 15547763 15547763 G C WIZ Missense_Mutation p.S128C 0.15 deleterious(0.04) possibly_damaging(0.609) TCGA-IR-A3LL-01 19 16524625 16524625 C T EPS15L1 Missense_Mutation p.E409K 0.11 deleterious(0) benign(0.197) TCGA-IR-A3LL-01 19 17664206 17664206 C T FAM129C Missense_Mutation p.A643V 0.10 tolerated_low_confidence(1) benign(0.003) TCGA-IR-A3LL-01 19 18239690 18239690 C T MAST3 Silent p.V355V 0.12 TCGA-IR-A3LL-01 19 18966783 18966783 G A UPF1 Missense_Mutation p.E532K 0.42 deleterious(0.02) benign(0.23) TCGA-IR-A3LL-01 19 19049681 19049681 G C HOMER3 Missense_Mutation p.I9M 0.19 deleterious(0) probably_damaging(0.949) TCGA-IR-A3LL-01 19 19216387 19216387 C G SLC25A42 Silent p.L77L 0.19 TCGA-IR-A3LL-01 19 19452111 19452111 C G MAU2 Silent p.L210L 0.26 TCGA-IR-A3LL-01 19 21265125 21265125 G A ZNF714 5'UTR 0.10 TCGA-IR-A3LL-01 19 22939111 22939111 G A ZNF99 3'Flank 0.26 TCGA-IR-A3LL-01 19 23545029 23545029 G A ZNF91 Missense_Mutation p.S251L 0.22 deleterious(0.03) probably_damaging(0.966) TCGA-IR-A3LL-01 19 24010138 24010138 C T RPSAP58 Silent p.L59L 0.19 TCGA-IR-A3LL-01 19 30314669 30314669 G T CCNE1 Silent p.G406G 0.17 TCGA-IR-A3LL-01 19 3162819 3162819 G C GNA15 Missense_Mutation p.K309N 0.12 tolerated(0.07) possibly_damaging(0.898) TCGA-IR-A3LL-01 19 38800279 38800279 C T YIF1B Silent p.S21S 0.20 TCGA-IR-A3LL-01 19 38990368 38990368 C G RYR1 Nonsense_Mutation p.S2374* 0.38 TCGA-IR-A3LL-01 19 40895684 40895684 G C HIPK4 Silent p.L42L 0.14 TCGA-IR-A3LL-01 19 41223322 41223322 G C ITPKC Missense_Mutation p.Q94H 0.15 tolerated_low_confidence(0.19) benign(0.002) TCGA-IR-A3LL-01 19 42526474 42526474 G A GRIK5 Silent p.I502I 0.16 TCGA-IR-A3LL-01 19 42791020 42791020 G A CIC Silent p.P55P 0.19 TCGA-IR-A3LL-01 19 43708175 43708175 C G PSG4 Missense_Mutation p.R98T 0.21 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LL-01 19 438722 438722 C T SHC2 Missense_Mutation p.R239H 0.18 deleterious(0.01) benign(0.344) TCGA-IR-A3LL-01 19 44012939 44012939 G A ETHE1 Missense_Mutation p.H195Y 0.21 deleterious(0) probably_damaging(1) TCGA-IR-A3LL-01 19 45493813 45493813 C G CLPTM1 Silent p.L431L 0.28 TCGA-IR-A3LL-01 19 46216131 46216131 C T FBXO46 Missense_Mutation p.G208E 0.19 tolerated(0.36) possibly_damaging(0.728) TCGA-IR-A3LL-01 19 46857221 46857221 G A PPP5C Missense_Mutation p.R113Q 0.17 deleterious(0.04) benign(0.032) TCGA-IR-A3LL-01 19 47764056 47764056 C T CCDC9 Missense_Mutation p.S141F 0.27 deleterious(0.04) benign(0.229) TCGA-IR-A3LL-01 19 47778656 47778656 C G PRR24 3'UTR 0.29 TCGA-IR-A3LL-01 19 48685724 48685724 C T C19orf68 Silent p.P96P 0.35 TCGA-IR-A3LL-01 19 49436959 49436959 G C DHDH 5'UTR 0.15 TCGA-IR-A3LL-01 19 50902284 50902284 A T POLD1 Missense_Mutation p.Q59L 0.09 tolerated(0.16) possibly_damaging(0.885) TCGA-IR-A3LL-01 19 54691159 54691159 C T MBOAT7 Missense_Mutation p.A73T 0.27 tolerated(0.44) benign(0.004) TCGA-IR-A3LL-01 19 56089506 56089506 G A ZNF579 Silent p.L500L 0.17 TCGA-IR-A3LL-01 19 5696116 5696116 C G LONP1 Missense_Mutation p.E654D 0.12 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LL-01 19 5751739 5751739 C T CATSPERD Missense_Mutation p.R357C 0.17 deleterious(0.04) possibly_damaging(0.729) TCGA-IR-A3LL-01 19 5789420 5789420 C T DUS3L Missense_Mutation p.R233H 0.21 deleterious(0.05) benign(0.015) TCGA-IR-A3LL-01 19 58772318 58772318 G A ZNF544 Missense_Mutation p.E116K 0.24 tolerated(0.12) benign(0.014) TCGA-IR-A3LL-01 19 6387425 6387425 C T GTF2F1 Missense_Mutation p.E158K 0.21 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LL-01 19 6963770 6963770 G A EMR4P RNA 0.22 TCGA-IR-A3LL-01 1 10075889 10075889 G A RBP7 Silent p.%3D 0.29 TCGA-IR-A3LL-01 1 101706055 101706055 G A S1PR1 3'UTR 0.31 TCGA-IR-A3LL-01 1 109482749 109482749 G T CLCC1 Nonsense_Mutation p.S271* 0.28 TCGA-IR-A3LL-01 1 11168296 11168296 C T MTOR Missense_Mutation p.E2526K 0.14 deleterious(0.01) benign(0.412) TCGA-IR-A3LL-01 1 113214196 113214196 G C CAPZA1 3'UTR 0.23 TCGA-IR-A3LL-01 1 117087104 117087104 C G CD58 Missense_Mutation p.E65Q 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-IR-A3LL-01 1 117617603 117617603 C G TTF2 Missense_Mutation p.Q133E 0.22 tolerated(0.61) benign(0.437) TCGA-IR-A3LL-01 1 117634520 117634520 C T TTF2 Missense_Mutation p.S918F 0.10 deleterious(0) probably_damaging(0.981) TCGA-IR-A3LL-01 1 117663434 117663434 G A TRIM45 Silent p.G130G 0.31 TCGA-IR-A3LL-01 1 118167276 118167276 G A FAM46C 3'UTR 0.22 TCGA-IR-A3LL-01 1 118523962 118523962 C G SPAG17 Missense_Mutation p.E1979Q 0.17 tolerated(0.41) benign(0.271) TCGA-IR-A3LL-01 1 1203290 1203290 G A UBE2J2 Missense_Mutation p.P28L 0.27 deleterious(0.03) possibly_damaging(0.665) TCGA-IR-A3LL-01 1 120462868 120462868 C G NOTCH2 Silent p.V1821V 0.24 TCGA-IR-A3LL-01 1 12837385 12837385 C G PRAMEF12 Silent p.L365L 0.07 TCGA-IR-A3LL-01 1 1375960 1375960 C G VWA1 3'UTR 0.30 TCGA-IR-A3LL-01 1 1425767 1425767 G A ATAD3B Missense_Mutation p.D490N 0.14 tolerated(0.07) benign(0.033) TCGA-IR-A3LL-01 1 145296382 145296382 C G NBPF10 Missense_Mutation p.Q102E 0.12 benign(0.405) TCGA-IR-A3LL-01 1 149908229 149908229 G C MTMR11 Intron 0.29 TCGA-IR-A3LL-01 1 150238976 150238976 G A APH1A Silent p.I230I 0.26 TCGA-IR-A3LL-01 1 150913850 150913850 C G SETDB1 Missense_Mutation p.Q165E 0.25 deleterious_low_confidence(0.01) benign(0.345) TCGA-IR-A3LL-01 1 151403234 151403234 G A POGZ Nonsense_Mutation p.Q123* 0.16 TCGA-IR-A3LL-01 1 151491314 151491314 C T CGN Nonsense_Mutation p.Q107* 0.11 TCGA-IR-A3LL-01 1 152327738 152327738 G A FLG2 Nonsense_Mutation p.Q842* 0.20 TCGA-IR-A3LL-01 1 155744901 155744901 G C GON4L Missense_Mutation p.Q748E 0.12 deleterious(0.04) possibly_damaging(0.878) TCGA-IR-A3LL-01 1 155744925 155744925 G A GON4L Missense_Mutation p.H740Y 0.20 tolerated(0.07) probably_damaging(0.946) TCGA-IR-A3LL-01 1 156437234 156437234 C T MEF2D 3'UTR 0.38 TCGA-IR-A3LL-01 1 156712760 156712760 G A HDGF 3'Flank 0.30 TCGA-IR-A3LL-01 1 158549459 158549459 G C OR10X1 Silent p.L77L 0.17 TCGA-IR-A3LL-01 1 166822562 166822562 C T POGK 3'UTR 0.10 TCGA-IR-A3LL-01 1 166822909 166822909 C T POGK 3'UTR 0.22 TCGA-IR-A3LL-01 1 166822948 166822948 C T POGK 3'UTR 0.31 TCGA-IR-A3LL-01 1 166823459 166823459 C T POGK 3'UTR 0.13 TCGA-IR-A3LL-01 1 166823534 166823536 CTC TT POGK 3'UTR 0.13 TCGA-IR-A3LL-01 1 16916422 16916422 C G NBPF1 Missense_Mutation p.E84Q 0.10 deleterious(0.03) possibly_damaging(0.607) TCGA-IR-A3LL-01 1 171526692 171526692 C T PRRC2C Missense_Mutation p.S1812L 0.14 unknown(0) TCGA-IR-A3LL-01 1 1717770 1717770 C T GNB1 3'UTR 0.33 TCGA-IR-A3LL-01 1 176853535 176853535 C G ASTN1 Missense_Mutation p.D1056H 0.25 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LL-01 1 186014982 186014982 G C HMCN1 Missense_Mutation p.R2156T 0.19 benign(0.001) TCGA-IR-A3LL-01 1 19549250 19549250 C T EMC1 Missense_Mutation p.A819T 0.18 tolerated(0.13) benign(0.383) TCGA-IR-A3LL-01 1 201838797 201838797 C G IPO9 Missense_Mutation p.P695R 0.29 deleterious(0) probably_damaging(0.991) TCGA-IR-A3LL-01 1 202702904 202702904 G A KDM5B Silent p.I1178I 0.25 TCGA-IR-A3LL-01 1 203316711 203316711 G C FMOD Missense_Mutation p.L230V 0.23 tolerated(0.22) benign(0.06) TCGA-IR-A3LL-01 1 205057572 205057572 G C RBBP5 3'UTR 0.22 TCGA-IR-A3LL-01 1 205501487 205501487 G A CDK18 3'Flank 0.23 TCGA-IR-A3LL-01 1 20977205 20977205 G A PINK1 3'UTR 0.26 TCGA-IR-A3LL-01 1 215256745 215256745 C T KCNK2 Missense_Mutation p.S6L 0.24 deleterious_low_confidence(0.01) benign(0.001) TCGA-IR-A3LL-01 1 22166489 22166489 C T HSPG2 Missense_Mutation p.D3179N 0.23 probably_damaging(0.992) TCGA-IR-A3LL-01 1 223395529 223395529 C G SUSD4 3'UTR 0.21 TCGA-IR-A3LL-01 1 224573317 224573317 G C WDR26 3'UTR 0.23 TCGA-IR-A3LL-01 1 225477628 225477628 G A DNAH14 Silent p.L2025L 0.26 TCGA-IR-A3LL-01 1 226353582 226353582 C G ACBD3 Missense_Mutation p.D136H 0.15 deleterious(0) probably_damaging(0.961) TCGA-IR-A3LL-01 1 228347003 228347003 G C GJC2 3'UTR 0.21 TCGA-IR-A3LL-01 1 231131561 231131561 G T ARV1 Missense_Mutation p.M168I 0.26 tolerated(0.45) benign(0.002) TCGA-IR-A3LL-01 1 231333183 231333183 C T TRIM67 Nonsense_Mutation p.Q371* 0.25 TCGA-IR-A3LL-01 1 233091309 233091309 G C NTPCR Missense_Mutation p.G14A 0.21 deleterious(0) probably_damaging(0.987) TCGA-IR-A3LL-01 1 234529150 234529150 C T TARBP1 Silent p.Q1506Q 0.27 TCGA-IR-A3LL-01 1 23520785 23520785 G C HTR1D 5'UTR 0.22 TCGA-IR-A3LL-01 1 237919656 237919656 G A RYR2 Silent p.E3738E 0.20 TCGA-IR-A3LL-01 1 245847666 245847666 G A KIF26B Missense_Mutation p.R797K 0.29 deleterious(0) unknown(0) TCGA-IR-A3LL-01 1 247002960 247002960 C T AHCTF1 3'UTR 0.20 TCGA-IR-A3LL-01 1 26526400 26526400 G C CATSPER4 Missense_Mutation p.E280Q 0.16 tolerated(0.06) possibly_damaging(0.458) TCGA-IR-A3LL-01 1 27180343 27180343 C T ZDHHC18 3'UTR 0.14 TCGA-IR-A3LL-01 1 28562944 28562944 G A ATPIF1 Missense_Mutation p.E54K 0.14 deleterious(0) probably_damaging(0.974) TCGA-IR-A3LL-01 1 31467954 31467954 C T PUM1 Silent p.K278K 0.18 TCGA-IR-A3LL-01 1 3334454 3334454 G A PRDM16 Silent p.S918S 0.29 TCGA-IR-A3LL-01 1 33360939 33360939 C G TMEM54 Silent p.L187L 0.38 TCGA-IR-A3LL-01 1 35228801 35228801 G A GJB4 3'UTR 0.22 TCGA-IR-A3LL-01 1 36321084 36321084 G A AGO4 3'UTR 0.14 TCGA-IR-A3LL-01 1 36757080 36757080 T G THRAP3 Silent p.A617A 0.38 TCGA-IR-A3LL-01 1 41949743 41949743 C G EDN2 Missense_Mutation p.D66H 0.06 deleterious(0) probably_damaging(1) TCGA-IR-A3LL-01 1 43638464 43638464 C G WDR65 Missense_Mutation p.L14V 0.21 tolerated(0.15) benign(0.202) TCGA-IR-A3LL-01 1 44877992 44877992 C T RNF220 Missense_Mutation p.R75W 0.20 deleterious(0) probably_damaging(0.998) TCGA-IR-A3LL-01 1 45799177 45799177 G C MUTYH Missense_Mutation p.L83V 0.18 tolerated(0.16) benign(0.001) TCGA-IR-A3LL-01 1 51869122 51869122 G C EPS15 Missense_Mutation p.S587C 0.20 deleterious(0.05) possibly_damaging(0.525) TCGA-IR-A3LL-01 1 53163902 53163902 C G COA7 Missense_Mutation p.D33H 0.13 deleterious(0.01) benign(0.006) TCGA-IR-A3LL-01 1 53163968 53163968 C G COA7 Missense_Mutation p.E11Q 0.27 tolerated(0.12) benign(0.22) TCGA-IR-A3LL-01 1 70819990 70819990 G A ANKRD13C Silent p.L34L 0.20 TCGA-IR-A3LL-01 1 71544392 71544392 C T ZRANB2 Splice_Site p.X19_splice 0.15 TCGA-IR-A3LL-01 1 82433724 82433724 C G LPHN2 Missense_Mutation p.F771L 0.30 deleterious(0.01) possibly_damaging(0.452) TCGA-IR-A3LL-01 1 94367192 94367192 G A GCLM Missense_Mutation p.H76Y 0.19 deleterious(0.01) benign(0.275) TCGA-IR-A3LL-01 1 95293118 95293118 C T SLC44A3 Missense_Mutation p.R112C 0.14 deleterious(0.01) benign(0.302) TCGA-IR-A3LL-01 1 99469973 99469973 G A LPPR5 Intron 0.25 TCGA-IR-A3LL-01 20 21314412 21314412 G A XRN2 Nonsense_Mutation p.W335* 0.33 TCGA-IR-A3LL-01 20 2985699 2985699 C T PTPRA Intron 0.27 TCGA-IR-A3LL-01 20 33565461 33565461 C A MYH7B Missense_Mutation p.S11Y 0.31 benign(0.001) TCGA-IR-A3LL-01 20 40054730 40054730 C G CHD6 Intron 0.10 TCGA-IR-A3LL-01 20 40877392 40877392 G A PTPRT Silent p.G749G 0.17 TCGA-IR-A3LL-01 20 43959178 43959178 C T SDC4 Silent p.E91E 0.34 TCGA-IR-A3LL-01 20 44037242 44037242 G A DBNDD2 Silent p.Q147Q 0.25 TCGA-IR-A3LL-01 20 44473027 44473027 G A ACOT8 Missense_Mutation p.A174V 0.11 tolerated(0.23) benign(0.01) TCGA-IR-A3LL-01 20 44692204 44692204 C G NCOA5 Missense_Mutation p.K315N 0.25 tolerated(0.09) probably_damaging(0.999) TCGA-IR-A3LL-01 20 5479672 5479672 C T LINC00654 RNA 0.35 TCGA-IR-A3LL-01 20 56825954 56825954 C G PPP4R1L Missense_Mutation p.E57Q 0.45 deleterious(0) possibly_damaging(0.785) TCGA-IR-A3LL-01 21 31798199 31798199 G A KRTAP13-3 Missense_Mutation p.S11F 0.26 deleterious(0.01) possibly_damaging(0.539) TCGA-IR-A3LL-01 21 38862616 38862616 G C DYRK1A Missense_Mutation p.Q268H 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-IR-A3LL-01 21 40777980 40777980 G C LCA5L Nonsense_Mutation p.S614* 0.29 TCGA-IR-A3LL-01 21 40778144 40778144 G A LCA5L Silent p.L559L 0.21 TCGA-IR-A3LL-01 21 42771122 42771122 G A MX2 Splice_Site p.X425_splice 0.27 TCGA-IR-A3LL-01 21 43816182 43816182 G A TMPRSS3 5'UTR 0.35 TCGA-IR-A3LL-01 22 17983929 17983929 G C CECR2 Missense_Mutation p.E210Q 0.23 tolerated(0.19) benign(0.058) TCGA-IR-A3LL-01 22 18560776 18560776 G A PEX26 5'UTR 0.38 TCGA-IR-A3LL-01 22 20052087 20052087 G A TANGO2 Missense_Mutation p.D245N 0.18 tolerated(0.12) probably_damaging(1) TCGA-IR-A3LL-01 22 20133876 20133876 G C ZDHHC8 Intron 0.20 TCGA-IR-A3LL-01 22 24143243 24143243 G A SMARCB1 Missense_Mutation p.D159N 0.28 tolerated(0.22) benign(0.017) TCGA-IR-A3LL-01 22 24158954 24158954 C T SMARCB1 Intron 0.15 TCGA-IR-A3LL-01 22 25756029 25756029 C T LRP5L Missense_Mutation p.E11K 0.20 tolerated(0.42) benign(0.08) TCGA-IR-A3LL-01 22 37865747 37865747 G C MFNG 3'UTR 0.30 TCGA-IR-A3LL-01 22 40068993 40068993 C G CACNA1I Silent p.V1563V 0.21 TCGA-IR-A3LL-01 22 40731582 40731582 C G TNRC6B 3'UTR 0.26 TCGA-IR-A3LL-01 22 42128517 42128517 G C MEI1 Missense_Mutation p.R414T 0.37 tolerated(0.58) benign(0.329) TCGA-IR-A3LL-01 22 46758529 46758529 C T CELSR1 3'UTR 0.41 TCGA-IR-A3LL-01 22 49147625 49147625 C G FAM19A5 3'Flank 0.33 TCGA-IR-A3LL-01 2 101591925 101591925 C G NPAS2 Missense_Mutation p.P430A 0.24 tolerated(0.1) possibly_damaging(0.808) TCGA-IR-A3LL-01 2 102632495 102632495 G A IL1R2 Silent p.V165V 0.27 TCGA-IR-A3LL-01 2 128387388 128387388 C T MYO7B Missense_Mutation p.S1572L 0.21 tolerated(0.07) possibly_damaging(0.447) TCGA-IR-A3LL-01 2 179455128 179455128 C T TTN Missense_Mutation p.E20442K 0.24 TCGA-IR-A3LL-01 2 186661203 186661203 G A FSIP2 Missense_Mutation p.E3203K 0.37 probably_damaging(0.997) TCGA-IR-A3LL-01 2 192922421 192922421 C G TMEFF2 Missense_Mutation p.D174H 0.18 deleterious(0) possibly_damaging(0.879) TCGA-IR-A3LL-01 2 197964597 197964597 C T ANKRD44 Missense_Mutation p.R348K 0.26 tolerated(0.4) benign(0.411) TCGA-IR-A3LL-01 2 202151270 202151270 C T CASP8 Nonsense_Mutation p.Q524* 0.30 TCGA-IR-A3LL-01 2 20494214 20494214 G C PUM2 Missense_Mutation p.Q359E 0.21 deleterious(0.02) possibly_damaging(0.839) TCGA-IR-A3LL-01 2 208631186 208631186 C G FZD5 3'UTR 0.23 TCGA-IR-A3LL-01 2 208631689 208631689 C G FZD5 3'UTR 0.33 TCGA-IR-A3LL-01 2 218924939 218924939 C T CXCR2P1 RNA 0.21 TCGA-IR-A3LL-01 2 219134255 219134255 C T AAMP Missense_Mutation p.D42N 0.29 tolerated(0.09) probably_damaging(0.992) TCGA-IR-A3LL-01 2 224463757 224463757 G C SCG2 Missense_Mutation p.Q82E 0.25 tolerated(0.13) possibly_damaging(0.575) TCGA-IR-A3LL-01 2 228416718 228416718 C T AGFG1 Silent p.F498F 0.50 TCGA-IR-A3LL-01 2 228497805 228497805 C G C2orf83 5'UTR 0.30 TCGA-IR-A3LL-01 2 231684114 231684114 C G CAB39 3'UTR 0.19 TCGA-IR-A3LL-01 2 24498643 24498643 C T ITSN2 Missense_Mutation p.E674K 0.17 tolerated(0.07) unknown(0) TCGA-IR-A3LL-01 2 24521654 24521654 A G ITSN2 Silent p.R458R 0.32 TCGA-IR-A3LL-01 2 30382806 30382806 C G YPEL5 3'UTR 0.36 TCGA-IR-A3LL-01 2 44145397 44145397 C T LRPPRC Missense_Mutation p.E1013K 0.38 tolerated(0.23) benign(0.047) TCGA-IR-A3LL-01 2 69633183 69633183 C T NFU1 Missense_Mutation p.M172I 0.20 deleterious(0.03) benign(0.213) TCGA-IR-A3LL-01 2 70189039 70189039 G C ASPRV1 5'UTR 0.39 TCGA-IR-A3LL-01 2 70189152 70189152 G C ASPRV1 5'UTR 0.29 TCGA-IR-A3LL-01 2 70189276 70189276 G A ASPRV1 5'UTR 0.38 TCGA-IR-A3LL-01 2 70890611 70890611 G A ADD2 Silent p.F709F 0.44 TCGA-IR-A3LL-01 2 96940773 96940773 C G SNRNP200 Missense_Mutation p.E2130Q 0.10 tolerated(0.24) benign(0.003) TCGA-IR-A3LL-01 2 97866212 97866212 C G ANKRD36 Missense_Mutation p.S936C 0.14 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-IR-A3LL-01 2 98206253 98206253 G A ANKRD36B RNA 0.31 TCGA-IR-A3LL-01 3 108220642 108220642 C T MYH15 Missense_Mutation p.E106K 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-IR-A3LL-01 3 108746595 108746595 C T MORC1 Intron 0.14 TCGA-IR-A3LL-01 3 112534751 112534751 C T CD200R1L 3'UTR 0.28 TCGA-IR-A3LL-01 3 113513779 113513779 C G ATP6V1A Missense_Mutation p.S350C 0.21 deleterious(0) probably_damaging(1) TCGA-IR-A3LL-01 3 113672893 113672893 C T ZDHHC23 Nonsense_Mutation p.Q170* 0.17 TCGA-IR-A3LL-01 3 11600204 11600204 G C VGLL4 Missense_Mutation p.I239M 0.14 deleterious(0) probably_damaging(1) TCGA-IR-A3LL-01 3 119434565 119434565 C T MAATS1 Silent p.L219L 0.14 TCGA-IR-A3LL-01 3 121383432 121383432 G C GOLGB1 Silent p.V3235V 0.18 TCGA-IR-A3LL-01 3 122087074 122087074 C G CCDC58 Missense_Mutation p.K91N 0.21 tolerated(0.26) benign(0.018) TCGA-IR-A3LL-01 3 122274229 122274229 C T PARP9 Silent p.K298K 0.23 TCGA-IR-A3LL-01 3 122545885 122545885 G A DIRC2 Missense_Mutation p.D226N 0.10 tolerated(0.25) benign(0.011) TCGA-IR-A3LL-01 3 12641648 12641648 C T RAF1 Intron 0.35 TCGA-IR-A3LL-01 3 130107629 130107629 G C COL6A5 Missense_Mutation p.E690Q 0.18 deleterious(0.01) possibly_damaging(0.856) TCGA-IR-A3LL-01 3 133319563 133319563 C T TOPBP1 3'UTR 0.13 TCGA-IR-A3LL-01 3 137783472 137783472 G C DZIP1L Missense_Mutation p.Q714E 0.19 deleterious(0) probably_damaging(0.986) TCGA-IR-A3LL-01 3 138193129 138193129 G C ESYT3 Missense_Mutation p.R801S 0.12 deleterious(0) probably_damaging(0.997) TCGA-IR-A3LL-01 3 138195122 138195122 G A ESYT3 Silent p.V842V 0.31 TCGA-IR-A3LL-01 3 152017352 152017352 G A MBNL1 5'UTR 0.38 TCGA-IR-A3LL-01 3 152554516 152554516 C T P2RY1 Silent p.L315L 0.30 TCGA-IR-A3LL-01 3 158428576 158428576 G A RARRES1 Silent p.Y162Y 0.21 TCGA-IR-A3LL-01 3 164750342 164750342 G C SI Missense_Mutation p.H902D 0.27 tolerated(0.63) benign(0.008) TCGA-IR-A3LL-01 3 183479900 183479900 G A YEATS2 Missense_Mutation p.E594K 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IR-A3LL-01 3 184297318 184297318 G A EPHB3 Missense_Mutation p.E619K 0.12 deleterious(0.04) probably_damaging(0.927) TCGA-IR-A3LL-01 3 186502834 186502834 G T EIF4A2 Nonsense_Mutation p.E98* 0.20 TCGA-IR-A3LL-01 3 195508444 195508444 G A MUC4 Missense_Mutation p.S3336L 0.13 benign(0.316) TCGA-IR-A3LL-01 3 195510722 195510722 G C MUC4 Missense_Mutation p.L2577V 0.11 probably_damaging(0.937) TCGA-IR-A3LL-01 3 195510815 195510815 G A MUC4 Missense_Mutation p.H2546Y 0.10 benign(0.051) TCGA-IR-A3LL-01 3 195511010 195511010 G C MUC4 Missense_Mutation p.L2481V 0.10 unknown(0) TCGA-IR-A3LL-01 3 195511315 195511315 G A MUC4 Missense_Mutation p.S2379L 0.08 unknown(0) TCGA-IR-A3LL-01 3 195511634 195511634 G C MUC4 Missense_Mutation p.L2273V 0.06 unknown(0) TCGA-IR-A3LL-01 3 195511970 195511970 G A MUC4 Missense_Mutation p.L2161F 0.05 unknown(0) TCGA-IR-A3LL-01 3 195512018 195512018 G A MUC4 Missense_Mutation p.L2145F 0.06 unknown(0) TCGA-IR-A3LL-01 3 195609011 195609011 G C TNK2 Silent p.V329V 0.21 TCGA-IR-A3LL-01 3 197616441 197616441 G C IQCG 3'UTR 0.14 TCGA-IR-A3LL-01 3 39116328 39116328 G A WDR48 Missense_Mutation p.D262N 0.17 tolerated(0.07) benign(0.142) TCGA-IR-A3LL-01 3 50324844 50324844 C T LSMEM2 3'UTR 0.16 TCGA-IR-A3LL-01 3 52027809 52027809 G A RPL29 Nonsense_Mutation p.Q146* 0.14 TCGA-IR-A3LL-01 3 52941312 52941312 C T SFMBT1 Missense_Mutation p.E702K 0.22 deleterious(0.04) benign(0.115) TCGA-IR-A3LL-01 3 69054378 69054378 G A EOGT Missense_Mutation p.S143L 0.12 deleterious(0) probably_damaging(0.991) TCGA-IR-A3LL-01 3 93624964 93624964 G A PROS1 Silent p.L124L 0.11 TCGA-IR-A3LL-01 4 100237074 100237074 G C ADH1B Missense_Mutation p.S183C 0.14 deleterious(0) possibly_damaging(0.884) TCGA-IR-A3LL-01 4 104067180 104067180 C A CENPE Nonsense_Mutation p.E1407* 0.25 TCGA-IR-A3LL-01 4 123317485 123317485 A G ADAD1 Missense_Mutation p.E226G 0.21 deleterious(0.03) benign(0.03) TCGA-IR-A3LL-01 4 144481029 144481029 C G SMARCA5 3'Flank 0.23 TCGA-IR-A3LL-01 4 151500760 151500760 G A LRBA Intron 0.17 TCGA-IR-A3LL-01 4 162380377 162380377 G A FSTL5 Missense_Mutation p.S568L 0.15 tolerated(0.34) probably_damaging(0.942) TCGA-IR-A3LL-01 4 185074749 185074749 G A ENPP6 Silent p.L127L 0.25 TCGA-IR-A3LL-01 4 186578742 186578742 C T SORBS2 Missense_Mutation p.D135N 0.25 deleterious(0.01) benign(0.185) TCGA-IR-A3LL-01 4 5624319 5624319 C T EVC2 Missense_Mutation p.E816K 0.12 tolerated(0.15) probably_damaging(0.997) TCGA-IR-A3LL-01 4 5755658 5755658 G A EVC Missense_Mutation p.E488K 0.29 tolerated(1) benign(0) TCGA-IR-A3LL-01 4 672505 672505 C T MYL5 Missense_Mutation p.S21F 0.20 deleterious(0.01) benign(0.003) TCGA-IR-A3LL-01 4 69816797 69816797 G A UGT2A3 Missense_Mutation p.H228Y 0.23 deleterious(0.04) benign(0.296) TCGA-IR-A3LL-01 4 70080248 70080248 C T UGT2B11 Missense_Mutation p.D65N 0.27 tolerated(0.25) benign(0.084) TCGA-IR-A3LL-01 4 77231261 77231261 G A FAM47E-STBD1 3'UTR 0.40 TCGA-IR-A3LL-01 4 79343130 79343130 G A FRAS1 Missense_Mutation p.E1552K 0.25 probably_damaging(0.991) TCGA-IR-A3LL-01 4 88295859 88295859 G A HSD17B11 Missense_Mutation p.H148Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LL-01 4 94145869 94145869 C G GRID2 Missense_Mutation p.I356M 0.44 tolerated(0.51) benign(0.16) TCGA-IR-A3LL-01 5 112917198 112917198 C T YTHDC2 Nonsense_Mutation p.Q1147* 0.17 TCGA-IR-A3LL-01 5 134782257 134782257 G A C5orf20 Missense_Mutation p.S181L 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.504) TCGA-IR-A3LL-01 5 139712898 139712898 G A HBEGF 3'UTR 0.23 TCGA-IR-A3LL-01 5 141336489 141336489 G A PCDH12 Silent p.L310L 0.44 TCGA-IR-A3LL-01 5 147510927 147510927 C G SPINK5 Missense_Mutation p.P1054A 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-IR-A3LL-01 5 157166335 157166335 G A THG1L Missense_Mutation p.E248K 0.08 tolerated(0.07) benign(0.026) TCGA-IR-A3LL-01 5 158596779 158596779 G C RNF145 Missense_Mutation p.F312L 0.24 deleterious(0.01) possibly_damaging(0.854) TCGA-IR-A3LL-01 5 167182030 167182030 G A TENM2 Intron 0.09 TCGA-IR-A3LL-01 5 171766800 171766800 G A SH3PXD2B Silent p.L437L 0.29 TCGA-IR-A3LL-01 5 176917332 176917332 C T PDLIM7 Intron 0.40 TCGA-IR-A3LL-01 5 24487903 24487903 C T CDH10 Missense_Mutation p.E746K 0.29 tolerated(0.24) probably_damaging(0.973) TCGA-IR-A3LL-01 5 24511436 24511436 C T CDH10 Silent p.K334K 0.17 TCGA-IR-A3LL-01 5 35740349 35740349 G A SPEF2 Missense_Mutation p.E1104K 0.25 deleterious(0) probably_damaging(0.985) TCGA-IR-A3LL-01 5 35792494 35792494 G A SPEF2 Silent p.L1500L 0.24 TCGA-IR-A3LL-01 5 35793312 35793312 C T SPEF2 Missense_Mutation p.R1536W 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-IR-A3LL-01 5 35988572 35988572 C T UGT3A1 Missense_Mutation p.S59N 0.22 tolerated(0.46) benign(0.011) TCGA-IR-A3LL-01 5 37057342 37057342 T A NIPBL Missense_Mutation p.Y2440N 0.15 deleterious(0) probably_damaging(1) TCGA-IR-A3LL-01 5 43506470 43506470 C T C5orf34 Silent p.V104V 0.62 TCGA-IR-A3LL-01 5 52351382 52351382 C G ITGA2 Nonsense_Mutation p.S265* 0.18 TCGA-IR-A3LL-01 5 60839696 60839696 C G ZSWIM6 Missense_Mutation p.P1067R 0.25 deleterious(0) probably_damaging(0.979) TCGA-IR-A3LL-01 5 76003274 76003274 G A IQGAP2 3'UTR 0.30 TCGA-IR-A3LL-01 5 76359841 76359841 G A AGGF1 3'UTR 0.27 TCGA-IR-A3LL-01 5 94727215 94727215 C T FAM81B Missense_Mutation p.S41L 0.19 deleterious_low_confidence(0.01) benign(0.306) TCGA-IR-A3LL-01 6 116875494 116875494 C T FAM26D Silent p.L37L 0.23 TCGA-IR-A3LL-01 6 117642486 117642486 C G ROS1 Missense_Mutation p.E1905Q 0.14 deleterious(0) probably_damaging(0.982) TCGA-IR-A3LL-01 6 123590999 123590999 G A TRDN Missense_Mutation p.P578L 0.23 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-IR-A3LL-01 6 131466535 131466535 G C AKAP7 Missense_Mutation p.D44H 0.28 deleterious(0) probably_damaging(0.917) TCGA-IR-A3LL-01 6 13470649 13470649 G A AL583828.1 5'UTR 0.44 TCGA-IR-A3LL-01 6 170190344 170190344 C A LINC00242 RNA 0.29 TCGA-IR-A3LL-01 6 26157092 26157092 G A HIST1H1E Silent p.A158A 0.14 TCGA-IR-A3LL-01 6 26199793 26199793 G A HIST1H2BF Missense_Mutation p.E3K 0.28 deleterious_low_confidence(0.03) unknown(0) TCGA-IR-A3LL-01 6 26446130 26446130 G C BTN3A3 Missense_Mutation p.R211T 0.21 tolerated(0.1) benign(0.008) TCGA-IR-A3LL-01 6 30782146 30782146 C G LINC00243 RNA 0.35 TCGA-IR-A3LL-01 6 31323001 31323001 C T HLA-B Splice_Site p.X299_splice 0.30 TCGA-IR-A3LL-01 6 31692850 31692850 G C C6orf25 Nonstop_Mutation p.*242Sext*11 0.31 TCGA-IR-A3LL-01 6 32148026 32148026 C T RNF5 Missense_Mutation p.H156Y 0.35 tolerated(0.87) benign(0.008) TCGA-IR-A3LL-01 6 33391367 33391367 G C SYNGAP1 Missense_Mutation p.E61Q 0.37 tolerated(0.28) benign(0.031) TCGA-IR-A3LL-01 6 43490452 43490452 C T XPO5 3'UTR 0.26 TCGA-IR-A3LL-01 6 46135702 46135702 G A ENPP5 Missense_Mutation p.R100W 0.17 deleterious(0.03) possibly_damaging(0.72) TCGA-IR-A3LL-01 6 57512478 57512478 G A PRIM2 3'UTR 0.08 TCGA-IR-A3LL-01 6 74078950 74078950 G A OOEP Missense_Mutation p.H117Y 0.22 tolerated(0.07) possibly_damaging(0.782) TCGA-IR-A3LL-01 6 84235294 84235294 C T PRSS35 3'UTR 0.21 TCGA-IR-A3LL-01 6 84772652 84772652 C T MRAP2 Silent p.F56F 0.29 TCGA-IR-A3LL-01 6 84913791 84913791 C T KIAA1009 Missense_Mutation p.D199N 0.24 deleterious(0.04) benign(0.046) TCGA-IR-A3LL-01 6 90435005 90435005 C G MDN1 Missense_Mutation p.K1861N 0.21 possibly_damaging(0.696) TCGA-IR-A3LL-01 6 99979292 99979292 G A TSTD3 RNA 0.19 TCGA-IR-A3LL-01 7 116596563 116596563 G A ST7-OT4 Silent p.Q52Q 0.36 TCGA-IR-A3LL-01 7 128475570 128475570 C T FLNC Silent p.F181F 0.21 TCGA-IR-A3LL-01 7 140301267 140301267 G A DENND2A Missense_Mutation p.P311S 0.24 tolerated(0.14) possibly_damaging(0.829) TCGA-IR-A3LL-01 7 147844759 147844759 G A CNTNAP2 Missense_Mutation p.E911K 0.23 deleterious(0.04) benign(0.166) TCGA-IR-A3LL-01 7 148768366 148768366 G A ZNF786 Missense_Mutation p.R500W 0.36 deleterious(0.03) probably_damaging(0.939) TCGA-IR-A3LL-01 7 150500755 150500755 C T TMEM176A Silent p.I130I 0.22 TCGA-IR-A3LL-01 7 150936713 150936713 G C SMARCD3 Silent p.L431L 0.15 TCGA-IR-A3LL-01 7 28843919 28843919 C T CREB5 Missense_Mutation p.T269M 0.29 tolerated(0.13) unknown(0) TCGA-IR-A3LL-01 7 30092483 30092483 G C PLEKHA8 Splice_Site p.X266_splice 0.47 TCGA-IR-A3LL-01 7 30704803 30704803 C T CRHR2 Silent p.R169R 0.08 TCGA-IR-A3LL-01 7 33035911 33035911 C G FKBP9 Silent p.L392L 0.06 TCGA-IR-A3LL-01 7 4260916 4260916 C G SDK1 Missense_Mutation p.S1916C 0.09 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LL-01 7 44100431 44100431 G C DBNL Silent p.V412V 0.19 TCGA-IR-A3LL-01 7 44149878 44149878 G C AEBP1 Missense_Mutation p.E445Q 0.36 tolerated(0.16) benign(0.388) TCGA-IR-A3LL-01 7 44246081 44246081 G A YKT6 Silent p.E95E 0.19 TCGA-IR-A3LL-01 7 47814640 47814640 C T PKD1L1 3'UTR 0.18 TCGA-IR-A3LL-01 7 6018285 6018285 C T PMS2 Silent p.L739L 0.85 TCGA-IR-A3LL-01 7 63505960 63505960 G A ZNF727 5'UTR 0.20 TCGA-IR-A3LL-01 7 63538354 63538354 G A ZNF727 Silent p.E309E 0.50 TCGA-IR-A3LL-01 7 72417451 72417451 G C POM121 Intron 0.17 TCGA-IR-A3LL-01 7 75221789 75221789 G C HIP1 Missense_Mutation p.F76L 0.46 deleterious(0.01) possibly_damaging(0.753) TCGA-IR-A3LL-01 7 87487978 87487978 G C SLC25A40 Nonsense_Mutation p.S22* 0.23 TCGA-IR-A3LL-01 7 90338784 90338784 C T CDK14 5'UTR 0.29 TCGA-IR-A3LL-01 7 97852404 97852404 C G TECPR1 Missense_Mutation p.E942D 0.36 tolerated(0.6) benign(0.098) TCGA-IR-A3LL-01 7 99949970 99949970 G A PILRB 5'UTR 0.34 TCGA-IR-A3LL-01 8 101270620 101270620 G A RNF19A 3'UTR 0.31 TCGA-IR-A3LL-01 8 113301615 113301615 C T CSMD3 Missense_Mutation p.G3043R 0.22 deleterious(0.01) possibly_damaging(0.889) TCGA-IR-A3LL-01 8 124267821 124267821 C G ZHX1 Silent p.L122L 0.22 TCGA-IR-A3LL-01 8 124268338 124268338 C A ZHX1 5'UTR 0.17 TCGA-IR-A3LL-01 8 124382145 124382145 C T ATAD2 Missense_Mutation p.E283K 0.38 tolerated(0.08) benign(0.008) TCGA-IR-A3LL-01 8 125551267 125551267 G C TATDN1 Missense_Mutation p.I7M 0.12 deleterious(0) possibly_damaging(0.879) TCGA-IR-A3LL-01 8 125551403 125551403 G A NDUFB9 5'UTR 0.22 TCGA-IR-A3LL-01 8 130883699 130883699 C T FAM49B Silent p.V39V 0.18 TCGA-IR-A3LL-01 8 130883722 130883722 C T FAM49B Missense_Mutation p.E32K 0.23 deleterious(0) probably_damaging(0.999) TCGA-IR-A3LL-01 8 139164862 139164862 C T FAM135B Missense_Mutation p.G619E 0.17 tolerated(0.65) benign(0.308) TCGA-IR-A3LL-01 8 141468469 141468469 G A TRAPPC9 Silent p.C65C 0.19 TCGA-IR-A3LL-01 8 144654698 144654698 C T MROH6 Missense_Mutation p.A63T 0.26 tolerated_low_confidence(0.5) benign(0) TCGA-IR-A3LL-01 8 145153884 145153884 C T SHARPIN Missense_Mutation p.C354Y 0.14 deleterious(0) probably_damaging(1) TCGA-IR-A3LL-01 8 1954102 1954102 C G KBTBD11 3'UTR 0.13 TCGA-IR-A3LL-01 8 21845357 21845357 C T XPO7 Silent p.F592F 0.20 TCGA-IR-A3LL-01 8 27373884 27373884 G A EPHX2 Missense_Mutation p.M293I 0.08 deleterious(0.01) benign(0.309) TCGA-IR-A3LL-01 8 3063043 3063043 G A CSMD1 Missense_Mutation p.T1656M 0.22 probably_damaging(0.947) TCGA-IR-A3LL-01 8 38883375 38883375 C G ADAM9 Nonsense_Mutation p.S323* 0.37 TCGA-IR-A3LL-01 8 39847324 39847324 C T IDO2 Nonsense_Mutation p.Q225* 0.19 TCGA-IR-A3LL-01 8 59518528 59518528 G C NSMAF Missense_Mutation p.Q307E 0.19 tolerated(0.72) benign(0.005) TCGA-IR-A3LL-01 8 67342458 67342458 G A RRS1 Silent p.R364R 0.21 TCGA-IR-A3LL-01 8 67748196 67748196 G A SGK3 Missense_Mutation p.E210K 0.25 deleterious(0) possibly_damaging(0.799) TCGA-IR-A3LL-01 8 67748268 67748268 G A SGK3 Missense_Mutation p.E234K 0.18 tolerated(0.07) benign(0.312) TCGA-IR-A3LL-01 8 68107771 68107771 G C CSPP1 Missense_Mutation p.Q1203H 0.15 tolerated_low_confidence(0.11) benign(0.014) TCGA-IR-A3LL-01 8 68968202 68968202 C T PREX2 Missense_Mutation p.L411F 0.19 deleterious(0.01) possibly_damaging(0.783) TCGA-IR-A3LL-01 8 74705527 74705527 C T UBE2W 3'UTR 0.22 TCGA-IR-A3LL-01 8 7721079 7721079 C T SPAG11A 3'UTR 0.09 TCGA-IR-A3LL-01 8 95686546 95686546 C T ESRP1 Missense_Mutation p.S488L 0.17 deleterious(0) probably_damaging(0.955) TCGA-IR-A3LL-01 9 101765855 101765855 G A COL15A1 Missense_Mutation p.E396K 0.23 tolerated_low_confidence(0.16) benign(0.001) TCGA-IR-A3LL-01 9 104124827 104124827 C G BAAT Missense_Mutation p.L380F 0.17 tolerated(0.13) benign(0.013) TCGA-IR-A3LL-01 9 107367884 107367884 G C OR13C2 Missense_Mutation p.L9V 0.31 tolerated(1) benign(0.008) TCGA-IR-A3LL-01 9 112899043 112899043 G A PALM2-AKAP2 Missense_Mutation p.E407K 0.36 deleterious(0.03) possibly_damaging(0.82) TCGA-IR-A3LL-01 9 117808902 117808902 G C TNC Missense_Mutation p.L1638V 0.12 tolerated(0.51) probably_damaging(0.934) TCGA-IR-A3LL-01 9 130479949 130479949 C G TTC16 Silent p.L108L 0.21 TCGA-IR-A3LL-01 9 130890938 130890938 G A AL590708.2 Silent p.T51T 0.19 TCGA-IR-A3LL-01 9 130890945 130890945 G A AL590708.2 Missense_Mutation p.E54K 0.18 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-IR-A3LL-01 9 130891056 130891056 G A AL590708.2 Missense_Mutation p.E91K 0.34 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-IR-A3LL-01 9 130891140 130891140 G C AL590708.2 Missense_Mutation p.E119Q 0.23 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-IR-A3LL-01 9 130891158 130891158 G C AL590708.2 Missense_Mutation p.V125L 0.22 deleterious_low_confidence(0) benign(0.315) TCGA-IR-A3LL-01 9 131864781 131864781 G A CRAT Silent p.I176I 0.09 TCGA-IR-A3LL-01 9 132395141 132395141 G C NTMT1 Missense_Mutation p.L53F 0.26 tolerated(0.12) possibly_damaging(0.45) TCGA-IR-A3LL-01 9 136216772 136216772 C G RPL7A Missense_Mutation p.Q94E 0.18 tolerated(0.06) benign(0.126) TCGA-IR-A3LL-01 9 136406068 136406068 C T ADAMTSL2 Silent p.D209D 0.21 TCGA-IR-A3LL-01 9 139912145 139912145 C T ABCA2 Splice_Site p.X738_splice 0.17 TCGA-IR-A3LL-01 9 140002950 140002950 C G MAN1B1 Missense_Mutation p.F669L 0.17 deleterious(0) benign(0.252) TCGA-IR-A3LL-01 9 14082578 14082578 G C NFIB 3'Flank 0.24 TCGA-IR-A3LL-01 9 27203064 27203064 G A TEK Missense_Mutation p.G719E 0.19 tolerated(0.23) probably_damaging(0.999) TCGA-IR-A3LL-01 9 2823795 2823795 C G KIAA0020 Missense_Mutation p.E392Q 0.14 tolerated(0.28) benign(0.009) TCGA-IR-A3LL-01 9 32418333 32418333 C T ACO1 Missense_Mutation p.S161F 0.17 deleterious(0) probably_damaging(0.99) TCGA-IR-A3LL-01 9 32635100 32635100 G A TAF1L Missense_Mutation p.P160S 0.21 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-IR-A3LL-01 9 33038806 33038806 G A DNAJA1 Missense_Mutation p.D367N 0.38 tolerated(0.25) possibly_damaging(0.838) TCGA-IR-A3LL-01 9 35562970 35562970 G T FAM166B Missense_Mutation p.L132I 0.38 tolerated(0.09) possibly_damaging(0.756) TCGA-IR-A3LL-01 9 35610239 35610239 G C CD72 3'UTR 0.18 TCGA-IR-A3LL-01 9 37441722 37441722 G A ZBTB5 Missense_Mutation p.S276F 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IR-A3LL-01 9 71986460 71986460 C G FAM189A2 Missense_Mutation p.L20V 0.29 tolerated(0.14) unknown(0) TCGA-IR-A3LL-01 9 8454584 8454584 C T PTPRD Intron 0.22 TCGA-IR-A3LL-01 9 88190252 88190252 C G AGTPBP1 Missense_Mutation p.E1121Q 0.21 tolerated(0.05) benign(0.349) TCGA-IR-A3LL-01 9 97062636 97062636 G C ZNF169 Missense_Mutation p.E266Q 0.13 deleterious(0.01) possibly_damaging(0.908) TCGA-IR-A3LL-01 9 97869372 97869372 C T FANCC Silent p.T503T 0.09 TCGA-IR-A3LL-01 X 103420366 103420366 C T FAM199X Missense_Mutation p.S87L 0.44 deleterious_low_confidence(0) possibly_damaging(0.583) TCGA-IR-A3LL-01 X 105279279 105279279 C T SERPINA7 Silent p.Q240Q 0.30 TCGA-IR-A3LL-01 X 128696373 128696373 C T OCRL Missense_Mutation p.R318C 0.15 deleterious(0) probably_damaging(1) TCGA-IR-A3LL-01 X 12903915 12903915 C G TLR7 Missense_Mutation p.F96L 0.28 tolerated(1) benign(0.011) TCGA-IR-A3LL-01 X 131760334 131760334 C G HS6ST2 3'Flank 0.50 TCGA-IR-A3LL-01 X 1531692 1531692 G T ASMTL Silent p.I526I 0.20 TCGA-IR-A3LL-01 X 17653611 17653611 C T NHS Intron 0.25 TCGA-IR-A3LL-01 X 18183237 18183237 G A BEND2 Silent p.D764D 0.26 TCGA-IR-A3LL-01 X 31645828 31645828 C T DMD Missense_Mutation p.D2727N 0.33 possibly_damaging(0.728) TCGA-IR-A3LL-01 X 3229384 3229384 G A MXRA5 Missense_Mutation p.S2287F 0.30 deleterious(0) probably_damaging(0.966) TCGA-IR-A3LL-01 X 36337408 36337408 C T CXorf30 Missense_Mutation p.P256L 0.17 tolerated(1) benign(0) TCGA-IR-A3LL-01 X 37027059 37027059 G A FAM47C Silent p.E192E 0.23 TCGA-IR-A3LL-01 X 48932841 48932841 G C WDR45 Missense_Mutation p.I310M 0.29 deleterious(0.05) benign(0.192) TCGA-IR-A3LL-01 X 48933355 48933355 G A AF196779.12 Nonsense_Mutation p.Q90* 0.23 TCGA-IR-A3LL-01 X 64136882 64136882 G A ZC4H2 3'UTR 0.31 TCGA-IR-A3LL-01 X 70627452 70627452 G A TAF1 Missense_Mutation p.R1399H 0.10 deleterious(0) probably_damaging(0.917) TCGA-IR-A3LL-01 X 71427447 71427447 G C ERCC6L Missense_Mutation p.I390M 0.18 deleterious(0) probably_damaging(0.994) TCGA-IR-A3LL-01 X 72297759 72297759 C G PABPC1L2A 3'UTR 0.17 TCGA-JW-A5VG-01 10 115973875 115973875 T C TDRD1 Splice_Site p.X738_splice 0.45 TCGA-JW-A5VG-01 10 93011180 93011180 G A PCGF5 Missense_Mutation p.G153R 0.14 deleterious(0.04) probably_damaging(0.964) TCGA-JW-A5VG-01 11 108178704 108178704 C T ATM Nonsense_Mutation p.Q1919* 0.20 TCGA-JW-A5VG-01 11 19251318 19251318 G T E2F8 Missense_Mutation p.Q526K 0.20 tolerated(0.18) benign(0.194) TCGA-JW-A5VG-01 11 559464 559464 A G C11orf35 Intron 0.20 TCGA-JW-A5VG-01 12 96052837 96052837 C T NTN4 3'UTR 0.06 TCGA-JW-A5VG-01 13 41331097 41331097 C G MRPS31 Missense_Mutation p.V218L 0.10 tolerated(0.35) benign(0.167) TCGA-JW-A5VG-01 15 31196807 31196807 A G FAN1 5'UTR 0.69 TCGA-JW-A5VG-01 15 45415085 45415085 G C DUOXA1 Missense_Mutation p.P43R 0.13 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VG-01 15 63972950 63972952 CCT - HERC1 In_Frame_Del p.R2083_G2084delinsS 0.32 TCGA-JW-A5VG-01 16 27504033 27504033 G A GTF3C1 Missense_Mutation p.R960C 0.40 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VG-01 18 22805593 22805593 G A ZNF521 Silent p.N763N 0.41 TCGA-JW-A5VG-01 1 152192700 152192700 C T HRNR Missense_Mutation p.E469K 0.41 unknown(0) TCGA-JW-A5VG-01 1 183542373 183542373 T A NCF2 Missense_Mutation p.N186Y 0.35 deleterious(0) probably_damaging(0.944) TCGA-JW-A5VG-01 20 18022346 18022346 C T OVOL2 Missense_Mutation p.D115N 0.48 tolerated(0.15) benign(0.022) TCGA-JW-A5VG-01 20 1915398 1915398 C T SIRPA Nonsense_Mutation p.Q422* 0.28 TCGA-JW-A5VG-01 20 8665620 8665620 G A PLCB1 Missense_Mutation p.E302K 0.29 tolerated(0.07) benign(0.16) TCGA-JW-A5VG-01 21 39086687 39086687 G T KCNJ6 Missense_Mutation p.T258K 0.68 tolerated(0.1) probably_damaging(1) TCGA-JW-A5VG-01 2 160964291 160964291 C T ITGB6 Missense_Mutation p.G723R 0.34 deleterious(0) probably_damaging(1) TCGA-JW-A5VG-01 2 235949858 235949858 A C SH3BP4 Missense_Mutation p.K149Q 0.71 tolerated(0.38) benign(0.001) TCGA-JW-A5VG-01 2 32340826 32340826 G A SPAST Missense_Mutation p.R309H 0.37 deleterious(0.01) benign(0.386) TCGA-JW-A5VG-01 2 73677738 73677738 G A ALMS1 Missense_Mutation p.V1361I 0.36 benign(0.017) TCGA-JW-A5VG-01 3 165547887 165547887 G C BCHE Missense_Mutation p.T312S 0.38 tolerated(1) benign(0) TCGA-JW-A5VG-01 4 2940996 2940996 C T NOP14 Missense_Mutation p.R798H 0.43 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VG-01 4 41984755 41984755 G A DCAF4L1 Missense_Mutation p.A316T 0.37 tolerated(0.08) probably_damaging(0.992) TCGA-JW-A5VG-01 4 57872999 57872999 T G POLR2B Missense_Mutation p.L412R 0.23 tolerated(0.13) benign(0.356) TCGA-JW-A5VG-01 5 1078023 1078023 G A SLC12A7 Silent p.A518A 0.18 TCGA-JW-A5VG-01 5 5186227 5186227 C T ADAMTS16 Missense_Mutation p.R276W 0.13 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VG-01 7 107577556 107577556 T C LAMB1 Missense_Mutation p.K1310E 0.76 deleterious(0.02) probably_damaging(0.999) TCGA-JW-A5VG-01 7 142045353 142045353 C T TRBV4-2 5'UTR 0.06 TCGA-JW-A5VG-01 7 28995360 28995360 C T AC005013.5 5'Flank 0.29 TCGA-JW-A5VG-01 9 121976225 121976225 G A BRINP1 Silent p.A298A 0.25 TCGA-JW-A5VG-01 9 138714664 138714664 G A CAMSAP1 Missense_Mutation p.R615W 0.40 tolerated(0.18) benign(0.416) TCGA-JW-A5VG-01 9 8499699 8499699 C T PTPRD Missense_Mutation p.G757D 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-JW-A5VG-01 9 95947670 95947670 G T WNK2 Missense_Mutation p.K153N 0.32 unknown(0) TCGA-JW-A5VG-01 9 98009763 98009763 A G FANCC Silent p.I67I 0.55 TCGA-JW-A5VG-01 X 54951467 54951467 A G TRO Missense_Mutation p.E484G 0.30 deleterious(0) unknown(0) TCGA-JW-A5VG-01 X 73044044 73044044 G A XIST RNA 0.51 TCGA-JW-A5VH-01 10 45799325 45799325 C A OR13A1 Silent p.L182L 0.58 TCGA-JW-A5VH-01 10 55568613 55568613 C A PCDH15 Nonsense_Mutation p.E667* 0.42 TCGA-JW-A5VH-01 10 7763649 7763649 G T ITIH2 Missense_Mutation p.R259I 0.37 deleterious(0) possibly_damaging(0.786) TCGA-JW-A5VH-01 10 89690847 89690847 G T PTEN Splice_Site p.X85_splice 0.78 TCGA-JW-A5VH-01 10 97918540 97918540 G A ZNF518A RNA 0.41 TCGA-JW-A5VH-01 11 5289647 5289647 T C HBE1 3'UTR 0.46 TCGA-JW-A5VH-01 11 64496388 64496388 C T RASGRP2 Missense_Mutation p.R573H 0.43 deleterious(0.01) benign(0.048) TCGA-JW-A5VH-01 11 68207255 68207255 C T LRP5 Silent p.C1453C 0.34 TCGA-JW-A5VH-01 11 69466021 69466021 C A CCND1 Missense_Mutation p.P287T 0.44 deleterious(0) probably_damaging(1) TCGA-JW-A5VH-01 11 78601032 78601032 C T TENM4 Silent p.P294P 0.51 TCGA-JW-A5VH-01 12 102179808 102179808 A G GNPTAB Missense_Mutation p.F185L 0.43 tolerated(0.1) benign(0.076) TCGA-JW-A5VH-01 12 18234322 18234322 G T RERGL Missense_Mutation p.L141M 0.43 deleterious(0.01) probably_damaging(0.985) TCGA-JW-A5VH-01 12 21711236 21711236 C A GYS2 Missense_Mutation p.L440F 0.53 tolerated(0.11) probably_damaging(1) TCGA-JW-A5VH-01 12 25398257 25398257 A C KRAS Missense_Mutation p.I21R 0.49 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VH-01 12 46121139 46121139 G C ARID2 5'Flank 0.34 TCGA-JW-A5VH-01 12 4919236 4919236 C T KCNA6 Missense_Mutation p.A10V 0.44 tolerated_low_confidence(0.19) benign(0.003) TCGA-JW-A5VH-01 12 5024789 5024789 C A KCNA1 3'UTR 0.43 TCGA-JW-A5VH-01 12 7640635 7640635 C T CD163 Missense_Mutation p.R490H 0.57 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VH-01 12 76739581 76739581 A C BBS10 3'UTR 0.53 TCGA-JW-A5VH-01 13 32676128 32676128 G A FRY Missense_Mutation p.R100H 0.26 deleterious(0.01) benign(0.082) TCGA-JW-A5VH-01 13 92101123 92101123 C T GPC5 Missense_Mutation p.T91M 0.40 deleterious(0) probably_damaging(0.982) TCGA-JW-A5VH-01 14 105476633 105476633 G T CDCA4 3'UTR 0.43 TCGA-JW-A5VH-01 14 60411327 60411327 A G LRRC9 Missense_Mutation p.I249M 0.38 tolerated(0.4) benign(0.084) TCGA-JW-A5VH-01 15 25446309 25446309 T C SNORD115-19 5'Flank 0.35 TCGA-JW-A5VH-01 15 26791453 26791453 T - GABRB3 3'UTR 0.43 TCGA-JW-A5VH-01 15 31239429 31239429 G T MTMR10 Silent p.S484S 0.42 TCGA-JW-A5VH-01 15 41062838 41062838 C T C15orf62 Nonsense_Mutation p.R49* 0.52 TCGA-JW-A5VH-01 16 1268641 1268641 C A CACNA1H Silent p.G1959G 0.52 TCGA-JW-A5VH-01 16 21858734 21858734 C A NPIPB4 Missense_Mutation p.W83C 0.56 benign(0.069) TCGA-JW-A5VH-01 16 31766511 31766511 G T ZNF720 Intron 0.47 TCGA-JW-A5VH-01 16 3297128 3297128 C T MEFV Missense_Mutation p.G492E 0.34 tolerated(0.3) benign(0.126) TCGA-JW-A5VH-01 16 54966154 54966154 G A IRX5 Intron 0.35 TCGA-JW-A5VH-01 16 58314086 58314086 C T PRSS54 3'UTR 0.41 TCGA-JW-A5VH-01 16 58633180 58633180 G A CNOT1 Missense_Mutation p.T21I 0.08 deleterious(0.01) possibly_damaging(0.697) TCGA-JW-A5VH-01 16 70597901 70597901 A G SF3B3 Missense_Mutation p.H804R 0.33 deleterious(0) possibly_damaging(0.796) TCGA-JW-A5VH-01 16 775082 775082 G A CCDC78 Missense_Mutation p.R186C 0.35 tolerated(0.08) possibly_damaging(0.781) TCGA-JW-A5VH-01 17 43184911 43184911 G T NMT1 3'UTR 0.37 TCGA-JW-A5VH-01 17 47696599 47696599 T C SPOP Missense_Mutation p.M117V 0.32 tolerated(0.12) possibly_damaging(0.526) TCGA-JW-A5VH-01 17 7701562 7701562 G A DNAH2 Missense_Mutation p.R2773H 0.43 probably_damaging(0.993) TCGA-JW-A5VH-01 18 33713236 33713236 C A ELP2 Silent p.T58T 0.53 TCGA-JW-A5VH-01 19 15541824 15541824 C T WIZ Intron 0.52 TCGA-JW-A5VH-01 19 1807256 1807256 C T ATP8B3 Missense_Mutation p.D176N 0.52 deleterious(0.03) benign(0.001) TCGA-JW-A5VH-01 19 42351694 42351694 C T DMRTC2 Silent p.C66C 0.30 TCGA-JW-A5VH-01 19 4652152 4652152 C T TNFAIP8L1 Missense_Mutation p.R91C 0.33 deleterious(0) possibly_damaging(0.774) TCGA-JW-A5VH-01 19 49632647 49632647 G T PPFIA3 Missense_Mutation p.R173L 0.46 deleterious(0.01) probably_damaging(0.985) TCGA-JW-A5VH-01 19 55649335 55649335 C A TNNT1 Silent p.L165L 0.27 TCGA-JW-A5VH-01 19 55672141 55672141 C T DNAAF3 Silent p.T373T 0.29 TCGA-JW-A5VH-01 19 6380388 6380388 G A GTF2F1 Silent p.S486S 0.28 TCGA-JW-A5VH-01 1 143767596 143767596 C A PPIAL4G Missense_Mutation p.D85Y 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-JW-A5VH-01 1 155920934 155920934 G A ARHGEF2 Missense_Mutation p.P797S 0.70 tolerated(0.64) possibly_damaging(0.656) TCGA-JW-A5VH-01 1 16957475 16957475 G A CROCCP2 RNA 0.28 TCGA-JW-A5VH-01 1 177937034 177937034 C T SEC16B Missense_Mutation p.R28Q 0.36 tolerated(0.46) benign(0.001) TCGA-JW-A5VH-01 1 178822864 178822864 A G ANGPTL1 Silent p.Y294Y 0.53 TCGA-JW-A5VH-01 1 183617796 183617796 C A APOBEC4 Missense_Mutation p.A41S 0.47 tolerated(0.14) probably_damaging(0.999) TCGA-JW-A5VH-01 1 198721850 198721850 C T PTPRC Missense_Mutation p.S1153F 0.37 tolerated(0.63) benign(0.048) TCGA-JW-A5VH-01 1 215901724 215901724 C T USH2A Missense_Mutation p.R3905H 0.31 probably_damaging(0.978) TCGA-JW-A5VH-01 1 27057988 27057988 C T ARID1A Nonsense_Mutation p.Q566* 0.81 TCGA-JW-A5VH-01 20 13145522 13145522 G C SPTLC3 3'UTR 0.44 TCGA-JW-A5VH-01 21 34948874 34948874 C G SON 3'UTR 0.31 TCGA-JW-A5VH-01 22 31664175 31664175 G A LIMK2 Missense_Mutation p.A415T 0.22 deleterious(0.03) possibly_damaging(0.788) TCGA-JW-A5VH-01 22 36900295 36900295 G A FOXRED2 Missense_Mutation p.P300L 0.34 tolerated(1) benign(0) TCGA-JW-A5VH-01 22 40800404 40800404 C T SGSM3 Missense_Mutation p.S104F 0.38 deleterious(0) possibly_damaging(0.655) TCGA-JW-A5VH-01 22 42209804 42209804 C T CCDC134 Missense_Mutation p.P181L 0.37 deleterious(0.05) probably_damaging(0.999) TCGA-JW-A5VH-01 22 42209805 42209805 A T CCDC134 Silent p.P181P 0.36 TCGA-JW-A5VH-01 22 50719367 50719367 C T PLXNB2 Missense_Mutation p.V1267M 0.36 deleterious(0.03) possibly_damaging(0.748) TCGA-JW-A5VH-01 2 120725438 120725438 C A PTPN4 Missense_Mutation p.L862I 0.45 deleterious(0.04) benign(0.065) TCGA-JW-A5VH-01 2 125281921 125281921 A C CNTNAP5 Missense_Mutation p.N456H 0.49 tolerated(0.08) possibly_damaging(0.701) TCGA-JW-A5VH-01 2 145157710 145157710 G - ZEB2 Frame_Shift_Del p.K349Rfs*21 0.36 TCGA-JW-A5VH-01 2 69573041 69573041 T G GFPT1 Missense_Mutation p.Y367S 0.33 tolerated(0.6) benign(0) TCGA-JW-A5VH-01 2 70057063 70057063 A T GMCL1 Missense_Mutation p.R13S 0.62 tolerated(0.61) benign(0.002) TCGA-JW-A5VH-01 2 89416874 89416874 C G IGKV1-17 Missense_Mutation p.D104H 0.54 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VH-01 3 100964803 100964803 G T IMPG2 Missense_Mutation p.H462Q 0.35 tolerated(0.22) benign(0.004) TCGA-JW-A5VH-01 3 12623768 12623768 C T MKRN2 3'UTR 0.22 TCGA-JW-A5VH-01 3 171427491 171427491 A G PLD1 Missense_Mutation p.I307T 0.44 tolerated(0.24) possibly_damaging(0.7) TCGA-JW-A5VH-01 3 178916726 178916726 G A PIK3CA Missense_Mutation p.R38H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VH-01 3 36756965 36756965 G A DCLK3 Missense_Mutation p.R601C 0.37 deleterious(0) probably_damaging(1) TCGA-JW-A5VH-01 3 41266098 41266098 A G CTNNB1 Missense_Mutation p.D32G 0.45 deleterious(0.01) possibly_damaging(0.452) TCGA-JW-A5VH-01 3 42700448 42700448 G A ZBTB47 Missense_Mutation p.G201S 0.44 tolerated(0.55) possibly_damaging(0.644) TCGA-JW-A5VH-01 3 48629870 48629870 T G COL7A1 Missense_Mutation p.Q336P 0.39 unknown(0) TCGA-JW-A5VH-01 4 8583293 8583293 T C GPR78 Missense_Mutation p.V195A 0.25 deleterious(0.04) probably_damaging(0.994) TCGA-JW-A5VH-01 5 102490374 102490375 - T PPIP5K2 Frame_Shift_Ins p.D409* 0.20 TCGA-JW-A5VH-01 5 179757762 179757762 C T GFPT2 Missense_Mutation p.D158N 0.42 deleterious(0.05) benign(0.005) TCGA-JW-A5VH-01 5 24593378 24593378 G A CDH10 Silent p.Y74Y 0.40 TCGA-JW-A5VH-01 6 152738082 152738082 C A SYNE1 Missense_Mutation p.L1830F 0.45 probably_damaging(0.999) TCGA-JW-A5VH-01 6 33245425 33245425 G A B3GALT4 Missense_Mutation p.V77M 0.33 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VH-01 6 51619602 51619602 C T PKHD1 Missense_Mutation p.R2926Q 0.52 tolerated(0.06) benign(0.06) TCGA-JW-A5VH-01 6 73111870 73111870 T A RIMS1 3'Flank 0.42 TCGA-JW-A5VH-01 7 98581869 98581869 G A TRRAP Missense_Mutation p.R3063Q 0.43 probably_damaging(0.994) TCGA-JW-A5VH-01 8 132052022 132052022 G A ADCY8 Silent p.N186N 0.36 TCGA-JW-A5VH-01 8 27737165 27737165 C T SCARA5 Silent p.K424K 0.42 TCGA-JW-A5VH-01 8 39080597 39080597 T G ADAM32 Missense_Mutation p.H455Q 0.36 deleterious(0.03) probably_damaging(0.964) TCGA-JW-A5VH-01 8 41582062 41582062 G A ANK1 Missense_Mutation p.T241M 0.05 deleterious(0) probably_damaging(1) TCGA-JW-A5VH-01 8 72182004 72182004 T C EYA1 Missense_Mutation p.T341A 0.30 deleterious(0.01) possibly_damaging(0.651) TCGA-JW-A5VH-01 9 127573363 127573363 C T OLFML2A 3'UTR 0.43 TCGA-JW-A5VH-01 X 113818568 113818568 G A HTR2C 5'UTR 0.31 TCGA-JW-A5VH-01 X 24745188 24745188 C G POLA1 Missense_Mutation p.Q505E 0.45 tolerated(0.15) benign(0.015) TCGA-JW-A5VH-01 X 30870896 30870896 G A TAB3 Missense_Mutation p.T570M 0.68 deleterious(0.01) benign(0.384) TCGA-JW-A5VH-01 X 39921444 39921444 T C BCOR Missense_Mutation p.N1459S 0.45 deleterious(0) possibly_damaging(0.644) TCGA-JW-A5VH-01 X 48801543 48801543 T C OTUD5 Missense_Mutation p.Q199R 0.43 tolerated(0.52) benign(0.008) TCGA-JW-A5VH-01 X 54985325 54985325 G A PFKFB1 Missense_Mutation p.R140W 0.37 probably_damaging(1) TCGA-JW-A5VH-01 X 5821413 5821413 G A NLGN4X Missense_Mutation p.R436W 0.47 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VI-01 10 61496974 61496974 G A LINC00948 RNA 0.38 TCGA-JW-A5VI-01 10 64953104 64953104 C G JMJD1C Splice_Site p.X1954_splice 0.25 TCGA-JW-A5VI-01 10 70103367 70103367 C T RUFY2 3'UTR 0.35 TCGA-JW-A5VI-01 10 70243298 70243298 C A SLC25A16 Missense_Mutation p.R297L 0.35 tolerated(0.67) benign(0.089) TCGA-JW-A5VI-01 11 35323113 35323113 G C SLC1A2 Missense_Mutation p.F270L 0.12 deleterious(0.01) probably_damaging(1) TCGA-JW-A5VI-01 11 62572855 62572855 C T NXF1 5'UTR 0.29 TCGA-JW-A5VI-01 11 65629694 65629694 C T MUS81 Missense_Mutation p.H155Y 0.34 tolerated(1) benign(0.053) TCGA-JW-A5VI-01 11 68855399 68855399 C T TPCN2 Missense_Mutation p.P746L 0.62 deleterious(0.02) benign(0.226) TCGA-JW-A5VI-01 11 83170497 83170497 C A DLG2 3'UTR 0.40 TCGA-JW-A5VI-01 12 110819749 110819749 G C ANAPC7 Missense_Mutation p.H348D 0.25 tolerated(0.18) possibly_damaging(0.677) TCGA-JW-A5VI-01 12 14613980 14613980 C T ATF7IP Nonsense_Mutation p.R904* 0.23 TCGA-JW-A5VI-01 12 14929308 14929308 G C H2AFJ 3'UTR 0.39 TCGA-JW-A5VI-01 12 46245832 46245832 C G ARID2 Nonsense_Mutation p.S1309* 0.50 TCGA-JW-A5VI-01 12 46246080 46246080 C G ARID2 Missense_Mutation p.P1392A 0.26 tolerated_low_confidence(0.18) benign(0.016) TCGA-JW-A5VI-01 12 55846658 55846669 AGAACAATTCTG - OR6C2 In_Frame_Del p.R221_L224del 0.28 TCGA-JW-A5VI-01 12 56558435 56558435 C T SMARCC2 Missense_Mutation p.A1074T 0.33 tolerated_low_confidence(0.52) unknown(0) TCGA-JW-A5VI-01 13 36747844 36747844 C T SOHLH2 Missense_Mutation p.D406N 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.731) TCGA-JW-A5VI-01 13 92380901 92380901 C T GPC5 Missense_Mutation p.T379M 0.40 deleterious(0.01) benign(0.393) TCGA-JW-A5VI-01 14 100792566 100792566 G A SLC25A47 Splice_Site p.X48_splice 0.38 TCGA-JW-A5VI-01 14 27066575 27066575 G A NOVA1 Missense_Mutation p.P23L 0.28 tolerated(0.05) unknown(0) TCGA-JW-A5VI-01 14 42373617 42373617 T A LRFN5 3'UTR 0.37 TCGA-JW-A5VI-01 14 59113812 59113812 G A DACT1 Missense_Mutation p.R824H 0.31 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VI-01 14 76012949 76012949 G A BATF Missense_Mutation p.E105K 0.38 deleterious(0.01) possibly_damaging(0.487) TCGA-JW-A5VI-01 14 88452831 88452831 A G GALC Splice_Site p.X148_splice 0.31 TCGA-JW-A5VI-01 15 20170003 20170003 G A IGHV1OR15-9 Missense_Mutation p.T90I 0.23 deleterious(0.02) benign(0.397) TCGA-JW-A5VI-01 15 48700732 48700733 - G FBN1 3'UTR 0.21 TCGA-JW-A5VI-01 15 81517900 81517900 G C IL16 Missense_Mutation p.E54Q 0.26 tolerated(0.07) possibly_damaging(0.791) TCGA-JW-A5VI-01 15 98516919 98516919 C T ARRDC4 3'UTR 0.10 TCGA-JW-A5VI-01 16 11771175 11771175 G C SNN 3'UTR 0.40 TCGA-JW-A5VI-01 16 19451964 19451964 C T TMC5 Silent p.L202L 0.31 TCGA-JW-A5VI-01 16 27352391 27352391 G A IL4R Intron 0.22 TCGA-JW-A5VI-01 16 30736067 30736067 G A SRCAP Silent p.S1774S 0.29 TCGA-JW-A5VI-01 16 67322304 67322304 G T PLEKHG4 Splice_Site p.X1152_splice 0.29 TCGA-JW-A5VI-01 16 7760713 7760713 A G RBFOX1 Missense_Mutation p.Y408C 0.27 tolerated(0.15) probably_damaging(0.999) TCGA-JW-A5VI-01 16 84199549 84199549 G C DNAAF1 Missense_Mutation p.E342Q 0.30 tolerated(0.08) benign(0.222) TCGA-JW-A5VI-01 17 18023395 18023395 C T MYO15A Silent p.H427H 0.23 TCGA-JW-A5VI-01 17 7479974 7479974 G A EIF4A1 Missense_Mutation p.G160S 0.53 deleterious(0) possibly_damaging(0.801) TCGA-JW-A5VI-01 18 44555118 44555118 C T TCEB3C Missense_Mutation p.V366I 0.03 tolerated(0.08) benign(0.145) TCGA-JW-A5VI-01 19 10088308 10088308 C T COL5A3 Missense_Mutation p.E1030K 0.63 benign(0.021) TCGA-JW-A5VI-01 19 11015736 11015736 G C CARM1 Missense_Mutation p.Q110H 0.26 tolerated(0.09) benign(0.02) TCGA-JW-A5VI-01 19 12734618 12734619 - T ZNF791 Frame_Shift_Ins p.K38Qfs*16 0.43 TCGA-JW-A5VI-01 19 21300204 21300204 C T ZNF714 Missense_Mutation p.T245I 0.48 tolerated(0.14) possibly_damaging(0.49) TCGA-JW-A5VI-01 19 3653299 3653299 G A PIP5K1C Missense_Mutation p.R304W 0.28 deleterious(0) probably_damaging(1) TCGA-JW-A5VI-01 19 42729913 42729913 C T ZNF526 Missense_Mutation p.S453L 0.13 tolerated(0.11) possibly_damaging(0.451) TCGA-JW-A5VI-01 1 156879698 156879698 C T PEAR1 Missense_Mutation p.P523S 0.26 tolerated(0.09) benign(0.253) TCGA-JW-A5VI-01 1 202858203 202858203 G A RABIF Silent p.S8S 0.37 TCGA-JW-A5VI-01 1 234444857 234444857 C T SLC35F3 Nonsense_Mutation p.R207* 0.29 TCGA-JW-A5VI-01 1 249142781 249142781 C T ZNF672 Silent p.L436L 0.33 TCGA-JW-A5VI-01 21 39580352 39580352 A T DSCR10 RNA 0.05 TCGA-JW-A5VI-01 21 41516627 41516627 A G DSCAM Missense_Mutation p.I1017T 0.31 deleterious(0) benign(0.336) TCGA-JW-A5VI-01 21 45556047 45556047 C T C21orf33 Silent p.G100G 0.36 TCGA-JW-A5VI-01 2 118677608 118677608 T C CCDC93 3'UTR 0.43 TCGA-JW-A5VI-01 2 136540402 136540402 A G UBXN4 Missense_Mutation p.D491G 0.40 tolerated(0.07) benign(0.041) TCGA-JW-A5VI-01 2 137852675 137852675 C G THSD7B Missense_Mutation p.L395V 0.43 tolerated(0.41) possibly_damaging(0.87) TCGA-JW-A5VI-01 2 167328850 167328850 G A SCN7A Silent p.L183L 0.29 TCGA-JW-A5VI-01 2 65473736 65473736 C T ACTR2 Nonsense_Mutation p.R85* 0.28 TCGA-JW-A5VI-01 2 73491609 73491609 C G FBXO41 Missense_Mutation p.E535Q 0.24 tolerated(0.28) benign(0.017) TCGA-JW-A5VI-01 2 97513998 97513998 C G ANKRD39 3'UTR 0.25 TCGA-JW-A5VI-01 3 55543687 55543687 C T ERC2 3'UTR 0.40 TCGA-JW-A5VI-01 4 100129851 100129851 C A ADH6 Nonsense_Mutation p.E268* 0.31 TCGA-JW-A5VI-01 4 100530023 100530023 C T MTTP Missense_Mutation p.S553F 0.50 deleterious(0.01) probably_damaging(0.992) TCGA-JW-A5VI-01 4 155155736 155155736 G A DCHS2 Silent p.I2901I 0.26 TCGA-JW-A5VI-01 4 164393427 164393427 G A TKTL2 Missense_Mutation p.P487L 0.37 deleterious(0.03) benign(0.382) TCGA-JW-A5VI-01 4 185940979 185940979 C TT HELT Frame_Shift_Ins p.P156Ffs*130 0.32 TCGA-JW-A5VI-01 4 22749491 22749491 C T GBA3 Missense_Mutation p.P287S 0.36 deleterious(0.02) benign(0.188) TCGA-JW-A5VI-01 4 2831494 2831494 C T SH3BP2 Silent p.T344T 0.56 TCGA-JW-A5VI-01 4 42964964 42964964 G A GRXCR1 Missense_Mutation p.R147H 0.42 tolerated(0.13) probably_damaging(0.999) TCGA-JW-A5VI-01 4 6596327 6596327 A T MAN2B2 Missense_Mutation p.I309F 0.59 deleterious(0) probably_damaging(0.945) TCGA-JW-A5VI-01 4 66189873 66189873 C G EPHA5 Missense_Mutation p.E1025Q 0.20 tolerated(0.36) probably_damaging(0.988) TCGA-JW-A5VI-01 4 83839270 83839270 G C THAP9 Missense_Mutation p.Q635H 0.26 deleterious(0) possibly_damaging(0.754) TCGA-JW-A5VI-01 4 87653625 87653625 C G PTPN13 Missense_Mutation p.L561V 0.34 tolerated(0.37) probably_damaging(0.944) TCGA-JW-A5VI-01 5 118813176 118813176 G A HSD17B4 Missense_Mutation p.M163I 0.38 deleterious(0) probably_damaging(0.948) TCGA-JW-A5VI-01 5 140558959 140558959 C T PCDHB8 Silent p.N448N 0.53 TCGA-JW-A5VI-01 5 141236899 141236899 G A PCDH1 Silent p.L1079L 0.44 TCGA-JW-A5VI-01 5 23509156 23509156 A T PRDM9 Missense_Mutation p.K5M 0.49 deleterious_low_confidence(0.01) unknown(0) TCGA-JW-A5VI-01 6 152470698 152470698 C A SYNE1 Nonsense_Mutation p.E8186* 0.30 TCGA-JW-A5VI-01 6 31632264 31632264 G A GPANK1 5'UTR 0.36 TCGA-JW-A5VI-01 6 3259313 3259313 G C PSMG4 Silent p.A19A 0.50 TCGA-JW-A5VI-01 6 32822041 32822041 C T PSMB9 Missense_Mutation p.P12L 0.36 tolerated(0.72) benign(0) TCGA-JW-A5VI-01 6 38840902 38840902 C T DNAH8 Silent p.L2269L 0.37 TCGA-JW-A5VI-01 6 43100622 43100622 G T PTK7 Intron 0.31 TCGA-JW-A5VI-01 6 70462177 70462177 C A LMBRD1 Missense_Mutation p.D127Y 0.23 deleterious(0) probably_damaging(0.965) TCGA-JW-A5VI-01 6 84884962 84884962 C T KIAA1009 Missense_Mutation p.E590K 0.29 tolerated(0.14) benign(0.392) TCGA-JW-A5VI-01 7 128845480 128845480 G A SMO Silent p.S259S 0.17 TCGA-JW-A5VI-01 7 150721408 150721408 G T ATG9B Missense_Mutation p.P35T 0.45 tolerated_low_confidence(0.08) unknown(0) TCGA-JW-A5VI-01 7 150774001 150774001 G A FASTK Missense_Mutation p.P514L 0.38 tolerated(0.05) possibly_damaging(0.623) TCGA-JW-A5VI-01 7 65419185 65419185 C T VKORC1L1 Silent p.I143I 0.39 TCGA-JW-A5VI-01 7 6797357 6797357 C T RSPH10B2 Missense_Mutation p.R17C 0.42 tolerated(0.07) benign(0.002) TCGA-JW-A5VI-01 7 71252834 71252834 C T CALN1 Missense_Mutation p.A238T 0.26 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VI-01 7 81667469 81667469 G A CACNA2D1 Missense_Mutation p.A321V 0.35 tolerated(0.11) probably_damaging(0.999) TCGA-JW-A5VI-01 8 12883330 12883330 G A KIAA1456 3'UTR 0.37 TCGA-JW-A5VI-01 8 1651334 1651334 G C DLGAP2 3'UTR 0.33 TCGA-JW-A5VI-01 8 17401053 17401053 G A SLC7A2 Missense_Mutation p.V109M 0.30 deleterious(0.04) possibly_damaging(0.885) TCGA-JW-A5VI-01 8 41798922 41798922 G C KAT6A Missense_Mutation p.S826C 0.29 benign(0.013) TCGA-JW-A5VI-01 9 115652031 115652031 C T SLC46A2 Missense_Mutation p.E311K 0.71 tolerated(0.27) benign(0.052) TCGA-JW-A5VI-01 9 23692077 23692077 C T ELAVL2 3'UTR 0.53 TCGA-JW-A5VI-01 9 3827920 3827920 G A GLIS3 3'UTR 0.73 TCGA-JW-A5VI-01 X 13778396 13778396 C G OFD1 Nonsense_Mutation p.S606* 0.29 TCGA-JW-A5VI-01 X 18966922 18966922 G A PHKA2 Silent p.L159L 0.28 TCGA-JW-A5VI-01 X 20156734 20156734 C T EIF1AX Missense_Mutation p.G8E 0.28 tolerated(0.06) unknown(0) TCGA-JW-A5VJ-01 10 104180693 104180693 G A FBXL15 5'UTR 0.35 TCGA-JW-A5VJ-01 10 112677948 112677948 C G BBIP1 5'UTR 0.46 TCGA-JW-A5VJ-01 10 12159690 12159690 C T DHTKD1 Nonsense_Mutation p.Q780* 0.20 TCGA-JW-A5VJ-01 10 129250102 129250102 G C DOCK1 3'UTR 0.18 TCGA-JW-A5VJ-01 10 129907260 129907260 C T MKI67 Missense_Mutation p.M948I 0.07 tolerated(0.3) benign(0.001) TCGA-JW-A5VJ-01 10 13782229 13782229 G C FRMD4A Missense_Mutation p.L213V 0.22 deleterious(0.04) possibly_damaging(0.807) TCGA-JW-A5VJ-01 10 15151821 15151821 G C NMT2 Missense_Mutation p.F452L 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-JW-A5VJ-01 10 15161425 15161425 G T NMT2 Missense_Mutation p.H363N 0.28 tolerated(0.57) benign(0.007) TCGA-JW-A5VJ-01 10 16866888 16866888 C T CUBN 3'UTR 0.32 TCGA-JW-A5VJ-01 10 78850175 78850175 C G KCNMA1 Missense_Mutation p.E439D 0.09 deleterious(0.04) possibly_damaging(0.634) TCGA-JW-A5VJ-01 10 98105853 98105853 G C OPALIN Missense_Mutation p.H91D 0.31 tolerated_low_confidence(0.1) benign(0.006) TCGA-JW-A5VJ-01 11 118406346 118406346 G A TMEM25 3'UTR 0.68 TCGA-JW-A5VJ-01 11 132288887 132288887 C T OPCML 3'UTR 0.10 TCGA-JW-A5VJ-01 11 47200581 47200581 C T PACSIN3 Missense_Mutation p.E301K 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-JW-A5VJ-01 11 56114370 56114370 C A OR8K1 Missense_Mutation p.L286M 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.677) TCGA-JW-A5VJ-01 11 57244279 57244279 C T RTN4RL2 Silent p.P386P 0.63 TCGA-JW-A5VJ-01 11 57982921 57982921 C T OR1S1 Silent p.I235I 0.21 TCGA-JW-A5VJ-01 11 61257393 61257393 C T PPP1R32 Missense_Mutation p.R395W 0.09 tolerated(0.06) benign(0.086) TCGA-JW-A5VJ-01 11 63995093 63995093 G A NUDT22 Silent p.V178V 0.34 TCGA-JW-A5VJ-01 11 68579947 68579947 G A CPT1A Missense_Mutation p.S80L 0.67 deleterious(0.01) benign(0.273) TCGA-JW-A5VJ-01 11 68702826 68702826 C T IGHMBP2 Silent p.V564V 0.31 TCGA-JW-A5VJ-01 11 71821365 71821365 G A LRTOMT 3'UTR 0.14 TCGA-JW-A5VJ-01 11 85627082 85627082 G A CCDC83 Missense_Mutation p.E327K 0.36 tolerated(1) benign(0.002) TCGA-JW-A5VJ-01 12 101480535 101480535 A G ANO4 Missense_Mutation p.N510S 0.72 tolerated(0.18) benign(0.431) TCGA-JW-A5VJ-01 12 103696206 103696206 G A C12orf42 Nonsense_Mutation p.Q255* 0.80 TCGA-JW-A5VJ-01 12 103696275 103696275 G C C12orf42 Missense_Mutation p.L232V 0.70 tolerated(0.93) benign(0.075) TCGA-JW-A5VJ-01 12 103696334 103696334 G A C12orf42 Missense_Mutation p.S212F 0.62 tolerated(0.11) possibly_damaging(0.865) TCGA-JW-A5VJ-01 12 105589110 105589110 C T APPL2 Silent p.L396L 0.17 TCGA-JW-A5VJ-01 12 109182130 109182130 C T SSH1 Missense_Mutation p.M928I 0.11 tolerated_low_confidence(0.35) benign(0.001) TCGA-JW-A5VJ-01 12 109182163 109182163 C T SSH1 Silent p.K917K 0.09 TCGA-JW-A5VJ-01 12 118504298 118504298 T A VSIG10 3'UTR 0.43 TCGA-JW-A5VJ-01 12 122497890 122497890 C A BCL7A 3'UTR 0.52 TCGA-JW-A5VJ-01 12 133240966 133240966 C G POLE Missense_Mutation p.E851Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VJ-01 12 19646858 19646858 C T AEBP2 Missense_Mutation p.S371F 0.13 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-JW-A5VJ-01 12 48438698 48438699 - T SENP1 3'UTR 0.30 TCGA-JW-A5VJ-01 12 51863470 51863470 C G SLC4A8 Silent p.L474L 0.33 TCGA-JW-A5VJ-01 12 53072416 53072416 C T KRT1 Missense_Mutation p.R239Q 0.37 tolerated(0.1) probably_damaging(0.916) TCGA-JW-A5VJ-01 12 56352293 56352293 G A PMEL Nonsense_Mutation p.Q145* 0.45 TCGA-JW-A5VJ-01 12 56872898 56872898 C G GLS2 Missense_Mutation p.E158Q 0.43 tolerated(0.75) benign(0.002) TCGA-JW-A5VJ-01 12 64041078 64041078 G A DPY19L2 Missense_Mutation p.T219I 0.13 tolerated(0.4) benign(0.034) TCGA-JW-A5VJ-01 12 6776880 6776880 C G ZNF384 Nonstop_Mutation p.*578Yext*13 0.29 TCGA-JW-A5VJ-01 12 72028591 72028591 C T ZFC3H1 Silent p.P751P 0.29 TCGA-JW-A5VJ-01 12 72317427 72317427 T - TBC1D15 3'UTR 0.56 TCGA-JW-A5VJ-01 12 74933363 74933363 G A ATXN7L3B 3'UTR 0.09 TCGA-JW-A5VJ-01 12 89860565 89860565 T C POC1B Silent p.E338E 0.21 TCGA-JW-A5VJ-01 12 89996922 89996922 G A ATP2B1 Silent p.N986N 0.23 TCGA-JW-A5VJ-01 13 103309409 103309409 G A TPP2 Missense_Mutation p.V986I 0.14 tolerated(0.35) benign(0.001) TCGA-JW-A5VJ-01 13 103338581 103338581 G A METTL21C Missense_Mutation p.H199Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VJ-01 13 103418790 103418790 C T TEX30 Nonsense_Mutation p.W215* 0.09 TCGA-JW-A5VJ-01 13 29284946 29284946 G A SLC46A3 Silent p.F365F 0.12 TCGA-JW-A5VJ-01 13 30054349 30054349 G A MTUS2 Missense_Mutation p.E1093K 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-JW-A5VJ-01 13 73651227 73651227 G A KLF5 3'UTR 0.39 TCGA-JW-A5VJ-01 13 73651289 73651289 G A KLF5 3'UTR 0.41 TCGA-JW-A5VJ-01 13 76395705 76395705 C T LMO7 Missense_Mutation p.S634F 0.09 deleterious(0.05) benign(0.001) TCGA-JW-A5VJ-01 14 102384222 102384222 G A PPP2R5C Missense_Mutation p.D492N 0.06 tolerated(0.09) possibly_damaging(0.541) TCGA-JW-A5VJ-01 14 105417727 105417727 G A AHNAK2 Missense_Mutation p.S1354F 0.10 possibly_damaging(0.683) TCGA-JW-A5VJ-01 14 23511492 23511492 C T PSMB11 Missense_Mutation p.H20Y 0.39 tolerated(0.31) benign(0) TCGA-JW-A5VJ-01 14 23532260 23532260 G A ACIN1 Nonsense_Mutation p.R979* 0.26 TCGA-JW-A5VJ-01 14 23844858 23844858 C T IL25 Silent p.L101L 0.14 TCGA-JW-A5VJ-01 14 50616733 50616733 G A SOS2 Missense_Mutation p.L793F 0.25 tolerated(0.12) possibly_damaging(0.496) TCGA-JW-A5VJ-01 14 61190085 61190085 G C SIX4 Missense_Mutation p.N236K 0.08 deleterious(0.03) benign(0.251) TCGA-JW-A5VJ-01 14 63848852 63848852 T C PPP2R5E Missense_Mutation p.N409S 0.38 deleterious(0) probably_damaging(0.931) TCGA-JW-A5VJ-01 14 68215002 68215002 C T ZFYVE26 3'UTR 0.33 TCGA-JW-A5VJ-01 14 69255171 69255172 - GAA ZFP36L1 3'UTR 0.41 TCGA-JW-A5VJ-01 14 91110510 91110510 G A TTC7B Nonsense_Mutation p.Q545* 0.06 TCGA-JW-A5VJ-01 14 93650488 93650488 C G MOAP1 Missense_Mutation p.E34Q 0.08 tolerated(0.06) possibly_damaging(0.596) TCGA-JW-A5VJ-01 14 94582983 94582983 C T IFI27 3'UTR 0.37 TCGA-JW-A5VJ-01 15 25616385 25616385 C A UBE3A Missense_Mutation p.K315N 0.09 tolerated(0.53) benign(0.085) TCGA-JW-A5VJ-01 15 40382037 40382037 G A BMF 3'UTR 0.28 TCGA-JW-A5VJ-01 15 40593811 40593811 C T PLCB2 Intron 0.18 TCGA-JW-A5VJ-01 15 40656732 40656732 C G DISP2 Missense_Mutation p.S197C 0.08 deleterious(0) probably_damaging(1) TCGA-JW-A5VJ-01 15 43931925 43931925 G A CATSPER2 Silent p.I211I 0.21 TCGA-JW-A5VJ-01 15 51868299 51868299 C G DMXL2 Missense_Mutation p.G56A 0.11 deleterious(0) probably_damaging(1) TCGA-JW-A5VJ-01 15 52356856 52356856 C T MAPK6 Nonsense_Mutation p.Q609* 0.21 TCGA-JW-A5VJ-01 15 52357584 52357584 C T MAPK6 3'UTR 0.12 TCGA-JW-A5VJ-01 15 59813663 59813663 C T FAM81A 3'UTR 0.35 TCGA-JW-A5VJ-01 15 65676546 65676546 C T IGDCC4 Missense_Mutation p.G1185E 0.07 tolerated_low_confidence(0.12) benign(0.015) TCGA-JW-A5VJ-01 15 77907603 77907603 C T LINGO1 Missense_Mutation p.G216S 0.25 tolerated(0.84) benign(0.125) TCGA-JW-A5VJ-01 15 79058074 79058074 C T ADAMTS7 Silent p.P1393P 0.10 TCGA-JW-A5VJ-01 15 93558026 93558026 C G CHD2 Nonsense_Mutation p.S1598* 0.14 TCGA-JW-A5VJ-01 16 1412296 1412296 C T GNPTG Silent p.L167L 0.12 TCGA-JW-A5VJ-01 16 16162084 16162084 C T ABCC1 Silent p.F583F 0.26 TCGA-JW-A5VJ-01 16 19468108 19468108 C G TMC5 Intron 0.17 TCGA-JW-A5VJ-01 16 19468272 19468272 C G TMC5 Intron 0.32 TCGA-JW-A5VJ-01 16 2293381 2293381 C T ECI1 Silent p.A167A 0.17 TCGA-JW-A5VJ-01 16 2345606 2345606 C A ABCA3 Missense_Mutation p.R800I 0.12 deleterious(0) benign(0.01) TCGA-JW-A5VJ-01 16 28468131 28468131 G C NPIPB7 Missense_Mutation p.L287V 0.18 tolerated_low_confidence(0.09) benign(0.228) TCGA-JW-A5VJ-01 16 28996069 28996069 G A LAT 5'Flank 0.21 TCGA-JW-A5VJ-01 16 31089785 31089785 G T ZNF646 Nonsense_Mutation p.E714* 0.68 TCGA-JW-A5VJ-01 16 4854597 4854597 C G GLYR1 3'UTR 0.32 TCGA-JW-A5VJ-01 16 4921180 4921180 G A UBN1 Silent p.K528K 0.15 TCGA-JW-A5VJ-01 16 4937187 4937187 G C PPL Missense_Mutation p.I852M 0.29 tolerated(0.16) benign(0.097) TCGA-JW-A5VJ-01 16 58581544 58581544 G A CNOT1 Missense_Mutation p.R1189C 0.22 deleterious(0) probably_damaging(0.969) TCGA-JW-A5VJ-01 16 675917 675917 C T RAB40C Missense_Mutation p.R121W 0.53 deleterious(0) possibly_damaging(0.815) TCGA-JW-A5VJ-01 16 76501324 76501324 C G CNTNAP4 Missense_Mutation p.S447C 0.05 tolerated(0.18) probably_damaging(0.954) TCGA-JW-A5VJ-01 17 10209931 10209931 C T MYH13 Missense_Mutation p.E1771K 0.14 deleterious(0) probably_damaging(0.992) TCGA-JW-A5VJ-01 17 10432195 10432195 C T MYH2 Missense_Mutation p.E1186K 0.16 deleterious(0.03) benign(0.163) TCGA-JW-A5VJ-01 17 1657566 1657566 C T SERPINF2 Missense_Mutation p.S405F 0.16 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VJ-01 17 18625638 18625638 C G TRIM16L 5'UTR 0.23 TCGA-JW-A5VJ-01 17 27590561 27590561 G C NUFIP2 3'UTR 0.50 TCGA-JW-A5VJ-01 17 2966880 2966880 C T OR1D5 Missense_Mutation p.E8K 0.34 tolerated(0.46) benign(0.002) TCGA-JW-A5VJ-01 17 3416710 3416710 G A TRPV3 3'UTR 0.38 TCGA-JW-A5VJ-01 17 3827979 3827979 G A ATP2A3 3'Flank 0.37 TCGA-JW-A5VJ-01 17 3828577 3828577 G C ATP2A3 3'Flank 0.15 TCGA-JW-A5VJ-01 17 39968784 39968784 G A LEPREL4 5'UTR 0.33 TCGA-JW-A5VJ-01 17 40173651 40173651 C T NKIRAS2 Missense_Mutation p.S19L 0.24 deleterious(0) benign(0.099) TCGA-JW-A5VJ-01 17 43226541 43226541 C T HEXIM1 5'UTR 0.07 TCGA-JW-A5VJ-01 17 5324784 5324784 C T RPAIN Nonsense_Mutation p.Q84* 0.33 TCGA-JW-A5VJ-01 17 57917764 57917764 C G VMP1 3'UTR 0.43 TCGA-JW-A5VJ-01 17 58326948 58326948 C A USP32 Intron 0.18 TCGA-JW-A5VJ-01 17 73060049 73060049 C G KCTD2 3'UTR 0.05 TCGA-JW-A5VJ-01 17 78115141 78115141 C G EIF4A3 Missense_Mutation p.E117Q 0.31 deleterious(0) probably_damaging(1) TCGA-JW-A5VJ-01 17 7919136 7919136 C T GUCY2D Missense_Mutation p.S1007L 0.07 deleterious(0) possibly_damaging(0.881) TCGA-JW-A5VJ-01 17 79431652 79431652 G T RP11-1055B8.7 3'UTR 0.42 TCGA-JW-A5VJ-01 18 13049486 13049486 C T CEP192 Missense_Mutation p.S899L 0.24 tolerated(0.11) benign(0.045) TCGA-JW-A5VJ-01 18 13049779 13049779 C T CEP192 Missense_Mutation p.S969F 0.40 tolerated(0.24) benign(0.275) TCGA-JW-A5VJ-01 18 13049781 13049781 C T CEP192 Missense_Mutation p.P970S 0.32 tolerated(0.19) benign(0.159) TCGA-JW-A5VJ-01 18 63430284 63430284 G C CDH7 Missense_Mutation p.G69A 0.15 deleterious(0) probably_damaging(0.949) TCGA-JW-A5VJ-01 19 10790503 10790503 C G ILF3 Silent p.L253L 0.25 TCGA-JW-A5VJ-01 19 12551903 12551903 C T ZNF443 5'UTR 0.13 TCGA-JW-A5VJ-01 19 12769297 12769297 G A MAN2B1 Missense_Mutation p.L352F 0.07 tolerated(0.35) benign(0.077) TCGA-JW-A5VJ-01 19 12903628 12903628 G C JUNB Nonstop_Mutation p.*348Sext*159 0.12 TCGA-JW-A5VJ-01 19 1393525 1393525 C T NDUFS7 Intron 0.42 TCGA-JW-A5VJ-01 19 2290031 2290031 C T LINGO3 Missense_Mutation p.G582E 0.19 tolerated(0.21) benign(0.002) TCGA-JW-A5VJ-01 19 3610756 3610756 G A CACTIN 3'UTR 0.11 TCGA-JW-A5VJ-01 19 36545864 36545864 C T WDR62 5'UTR 0.15 TCGA-JW-A5VJ-01 19 37117673 37117673 G A ZNF382 Missense_Mutation p.E292K 0.22 tolerated(0.07) possibly_damaging(0.64) TCGA-JW-A5VJ-01 19 37383865 37383865 C G ZNF829 Intron 0.35 TCGA-JW-A5VJ-01 19 40762918 40762918 C G AKT2 Missense_Mutation p.K30N 0.08 tolerated(0.22) benign(0.133) TCGA-JW-A5VJ-01 19 44832961 44832961 G C ZNF112 Nonsense_Mutation p.S456* 0.26 TCGA-JW-A5VJ-01 19 45562531 45562531 G A CLASRP Missense_Mutation p.E207K 0.12 tolerated(0.12) benign(0.059) TCGA-JW-A5VJ-01 19 48894602 48894602 C T KDELR1 Missense_Mutation p.R5Q 0.32 deleterious(0.01) probably_damaging(0.953) TCGA-JW-A5VJ-01 19 49132817 49132817 C T SPHK2 Silent p.F584F 0.30 TCGA-JW-A5VJ-01 19 49132889 49132889 C T SPHK2 Silent p.F608F 0.34 TCGA-JW-A5VJ-01 19 50368512 50368512 G A PNKP Silent p.L124L 0.17 TCGA-JW-A5VJ-01 19 52076543 52076543 T A ZNF175 5'UTR 0.13 TCGA-JW-A5VJ-01 19 53014094 53014094 G T ZNF578 Missense_Mutation p.D154Y 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-JW-A5VJ-01 19 53885136 53885136 G C ZNF525 Missense_Mutation p.G435A 0.38 deleterious(0.01) benign(0.261) TCGA-JW-A5VJ-01 19 54074903 54074903 G A ZNF331 Missense_Mutation p.E19K 0.27 deleterious(0) probably_damaging(0.973) TCGA-JW-A5VJ-01 19 56925726 56925726 C T ZNF583 Missense_Mutation p.S50F 0.09 deleterious(0.02) benign(0.041) TCGA-JW-A5VJ-01 19 6042128 6042128 G A RFX2 Missense_Mutation p.P63S 0.23 tolerated(0.2) benign(0.005) TCGA-JW-A5VJ-01 19 758693 758693 G C MISP Missense_Mutation p.D583H 0.09 deleterious(0.04) benign(0.022) TCGA-JW-A5VJ-01 19 9060012 9060012 G C MUC16 Missense_Mutation p.S9145C 0.17 unknown(0) TCGA-JW-A5VJ-01 19 9071029 9071029 G C MUC16 Missense_Mutation p.Q5473E 0.34 unknown(0) TCGA-JW-A5VJ-01 1 104068792 104068792 C T RNPC3 Silent p.L34L 0.24 TCGA-JW-A5VJ-01 1 113392570 113392570 C G RP11-426L16.8 RNA 0.30 TCGA-JW-A5VJ-01 1 114311001 114311001 C T RSBN1 Missense_Mutation p.E557K 0.30 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VJ-01 1 117529645 117529645 G C PTGFRN 3'UTR 0.22 TCGA-JW-A5VJ-01 1 120295200 120295200 C T HMGCS2 Missense_Mutation p.M464I 0.06 tolerated(0.25) possibly_damaging(0.691) TCGA-JW-A5VJ-01 1 120497829 120497829 C G NOTCH2 Missense_Mutation p.E685Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VJ-01 1 12183349 12183349 G A TNFRSF8 Missense_Mutation p.E319K 0.38 tolerated(0.16) possibly_damaging(0.526) TCGA-JW-A5VJ-01 1 144931290 144931290 C T PDE4DIP Intron 0.11 TCGA-JW-A5VJ-01 1 150248963 150248963 G A C1orf54 Missense_Mutation p.E75K 0.13 deleterious(0.03) benign(0.003) TCGA-JW-A5VJ-01 1 154223781 154223781 C T UBAP2L Missense_Mutation p.S493F 0.27 deleterious(0) unknown(0) TCGA-JW-A5VJ-01 1 154304127 154304127 C T ATP8B2 Silent p.I170I 0.24 TCGA-JW-A5VJ-01 1 158226841 158226841 C A CD1A Silent p.I290I 0.09 TCGA-JW-A5VJ-01 1 169509926 169509926 C T F5 Missense_Mutation p.E1468K 0.30 deleterious(0.01) possibly_damaging(0.81) TCGA-JW-A5VJ-01 1 177911073 177911073 C G SEC16B Missense_Mutation p.E662Q 0.05 tolerated(0.4) benign(0.057) TCGA-JW-A5VJ-01 1 19180914 19180914 G A TAS1R2 Silent p.L350L 0.29 TCGA-JW-A5VJ-01 1 193028664 193028664 G A TROVE2 5'Flank 0.27 TCGA-JW-A5VJ-01 1 193149281 193149281 C T B3GALT2 3'UTR 0.25 TCGA-JW-A5VJ-01 1 19550021 19550021 C A EMC1 Missense_Mutation p.D749Y 0.25 deleterious(0) probably_damaging(0.957) TCGA-JW-A5VJ-01 1 196309572 196309572 G A KCNT2 Missense_Mutation p.S561L 0.23 deleterious(0.03) probably_damaging(0.989) TCGA-JW-A5VJ-01 1 211749179 211749179 C G SLC30A1 Missense_Mutation p.E359Q 0.08 tolerated(0.08) benign(0.229) TCGA-JW-A5VJ-01 1 2408096 2408096 C T PLCH2 Intron 0.08 TCGA-JW-A5VJ-01 1 243507587 243507587 G A SDCCAG8 Missense_Mutation p.R476K 0.28 tolerated(0.08) benign(0.018) TCGA-JW-A5VJ-01 1 244869381 244869381 C G DESI2 3'UTR 0.14 TCGA-JW-A5VJ-01 1 36933545 36933545 G A CSF3R Missense_Mutation p.S581F 0.31 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VJ-01 1 37346308 37346308 G C GRIK3 Silent p.L159L 0.05 TCGA-JW-A5VJ-01 1 39801471 39801471 G A MACF1 Intron 0.14 TCGA-JW-A5VJ-01 1 39827169 39827169 C T MACF1 Silent p.F2135F 0.40 TCGA-JW-A5VJ-01 1 42046522 42046522 G A HIVEP3 Missense_Mutation p.S1316F 0.08 possibly_damaging(0.907) TCGA-JW-A5VJ-01 1 44063670 44063670 G A PTPRF Missense_Mutation p.D689N 0.18 tolerated(0.19) benign(0.031) TCGA-JW-A5VJ-01 1 46509304 46509304 G C PIK3R3 3'UTR 0.25 TCGA-JW-A5VJ-01 1 47078756 47078756 C G MOB3C Missense_Mutation p.E132Q 0.41 deleterious(0.03) benign(0.211) TCGA-JW-A5VJ-01 1 54325793 54325793 G A YIPF1 Missense_Mutation p.L289F 0.45 tolerated(0.58) benign(0.001) TCGA-JW-A5VJ-01 1 54509139 54509139 G A TMEM59 Silent p.F150F 0.31 TCGA-JW-A5VJ-01 1 70385049 70385049 G A LRRC7 Intron 0.07 TCGA-JW-A5VJ-01 1 70819809 70819809 G C ANKRD13C Missense_Mutation p.L95V 0.07 tolerated_low_confidence(0.76) benign(0.002) TCGA-JW-A5VJ-01 1 7724159 7724159 G A CAMTA1 Missense_Mutation p.G518R 0.16 deleterious_low_confidence(0.01) benign(0.001) TCGA-JW-A5VJ-01 1 89730417 89730417 C A GBP5 Missense_Mutation p.M367I 0.09 tolerated(0.18) benign(0.008) TCGA-JW-A5VJ-01 1 99771315 99771315 G A LPPR4 Silent p.L347L 0.10 TCGA-JW-A5VJ-01 20 13074214 13074214 C G SPTLC3 Missense_Mutation p.F272L 0.41 deleterious(0) possibly_damaging(0.734) TCGA-JW-A5VJ-01 20 34117114 34117114 G A C20orf173 Missense_Mutation p.S30L 0.15 tolerated(1) benign(0.009) TCGA-JW-A5VJ-01 20 48604490 48604490 C G SNAI1 Nonsense_Mutation p.S231* 0.31 TCGA-JW-A5VJ-01 20 54963252 54963252 A C AURKA Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-JW-A5VJ-01 20 58522040 58522040 G A FAM217B 3'UTR 0.29 TCGA-JW-A5VJ-01 21 10996118 10996118 C T TPTE RNA 0.13 TCGA-JW-A5VJ-01 21 32185547 32185547 G C KRTAP8-1 5'UTR 0.32 TCGA-JW-A5VJ-01 21 45457694 45457694 G T TRAPPC10 Missense_Mutation p.K57N 0.34 deleterious(0) possibly_damaging(0.846) TCGA-JW-A5VJ-01 21 45876948 45876948 C T LRRC3 Missense_Mutation p.R141C 0.28 deleterious(0.01) probably_damaging(0.962) TCGA-JW-A5VJ-01 21 46935896 46935896 C T SLC19A1 Silent p.L484L 0.30 TCGA-JW-A5VJ-01 21 46951727 46951727 G A SLC19A1 Silent p.V175V 0.27 TCGA-JW-A5VJ-01 21 46951839 46951839 G C SLC19A1 Missense_Mutation p.S138C 0.20 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VJ-01 21 47987592 47987592 G A DIP2A 3'UTR 0.23 TCGA-JW-A5VJ-01 22 23523873 23523873 C G BCR Silent p.V242V 0.25 TCGA-JW-A5VJ-01 22 24129273 24129273 C T SMARCB1 5'UTR 0.50 TCGA-JW-A5VJ-01 22 24129277 24129277 C T SMARCB1 5'UTR 0.55 TCGA-JW-A5VJ-01 22 31318350 31318350 G A MORC2 3'Flank 0.12 TCGA-JW-A5VJ-01 22 31318401 31318401 G A MORC2 3'Flank 0.24 TCGA-JW-A5VJ-01 22 37886834 37886834 G A CARD10 3'UTR 0.24 TCGA-JW-A5VJ-01 22 38610546 38610546 C G MAFF Silent p.L52L 0.26 TCGA-JW-A5VJ-01 22 38895463 38895463 C T DDX17 Silent p.V160V 0.43 TCGA-JW-A5VJ-01 22 50988006 50988006 G A KLHDC7B Missense_Mutation p.D471N 0.36 tolerated(0.05) probably_damaging(1) TCGA-JW-A5VJ-01 22 50988318 50988318 G T KLHDC7B Missense_Mutation p.G575W 0.37 deleterious(0) probably_damaging(1) TCGA-JW-A5VJ-01 22 50988354 50988354 G A KLHDC7B Missense_Mutation p.E587K 0.27 tolerated(1) benign(0.001) TCGA-JW-A5VJ-01 22 50988478 50988478 G C KLHDC7B 3'UTR 0.25 TCGA-JW-A5VJ-01 22 50988687 50988687 G C KLHDC7B 3'UTR 0.18 TCGA-JW-A5VJ-01 22 50989322 50989322 G A KLHDC7B 3'UTR 0.30 TCGA-JW-A5VJ-01 2 119599789 119599789 G A EN1 3'UTR 0.27 TCGA-JW-A5VJ-01 2 119752183 119752183 G A MARCO 3'UTR 0.36 TCGA-JW-A5VJ-01 2 131804531 131804531 G T ARHGEF4 3'UTR 0.26 TCGA-JW-A5VJ-01 2 135711875 135711875 C T CCNT2 Missense_Mutation p.S617L 0.32 deleterious(0) benign(0.11) TCGA-JW-A5VJ-01 2 162813641 162813641 C T SLC4A10 Missense_Mutation p.S895L 0.30 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VJ-01 2 172309709 172309709 G C DCAF17 Missense_Mutation p.E205Q 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VJ-01 2 179330622 179330622 C T FKBP7 Missense_Mutation p.E182K 0.41 tolerated(0.14) benign(0.004) TCGA-JW-A5VJ-01 2 201736079 201736079 C G PPIL3 3'UTR 0.33 TCGA-JW-A5VJ-01 2 224462210 224462210 G A SCG2 Silent p.L597L 0.22 TCGA-JW-A5VJ-01 2 242275398 242275398 G A SEPT2 Missense_Mutation p.E76K 0.09 tolerated(1) benign(0.006) TCGA-JW-A5VJ-01 2 242276901 242276901 G A SEPT2 Missense_Mutation p.C149Y 0.07 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VJ-01 2 42180244 42180244 G A C2orf91 Silent p.L64L 0.11 TCGA-JW-A5VJ-01 2 47085324 47085324 C T LINC01119 Nonsense_Mutation p.Q86* 0.06 TCGA-JW-A5VJ-01 2 5839412 5839412 G T SOX11 3'UTR 0.41 TCGA-JW-A5VJ-01 2 69475145 69475145 G T ANTXR1 3'UTR 0.17 TCGA-JW-A5VJ-01 2 74782350 74782350 G A DOK1 Missense_Mutation p.D44N 0.05 deleterious(0) probably_damaging(0.931) TCGA-JW-A5VJ-01 2 9989550 9989550 A C TAF1B Missense_Mutation p.K56Q 0.17 tolerated(1) benign(0.003) TCGA-JW-A5VJ-01 3 113724628 113724628 C T KIAA1407 Missense_Mutation p.G532D 0.16 tolerated(0.17) benign(0.012) TCGA-JW-A5VJ-01 3 121304901 121304901 G C ARGFX Missense_Mutation p.K134N 0.28 deleterious(0.01) probably_damaging(0.947) TCGA-JW-A5VJ-01 3 121547406 121547406 G A IQCB1 Silent p.L58L 0.23 TCGA-JW-A5VJ-01 3 128363805 128363805 C G RPN1 Missense_Mutation p.E95Q 0.26 tolerated(0.51) benign(0.043) TCGA-JW-A5VJ-01 3 154055577 154055577 G C GPR149 Missense_Mutation p.Q703E 0.08 tolerated(0.06) probably_damaging(0.986) TCGA-JW-A5VJ-01 3 169711114 169711114 G C SEC62 3'UTR 0.48 TCGA-JW-A5VJ-01 3 172165471 172165471 C T GHSR Missense_Mutation p.G245S 0.13 tolerated(0.56) benign(0.001) TCGA-JW-A5VJ-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-JW-A5VJ-01 3 186944295 186944295 G A MASP1 Silent p.I485I 0.20 TCGA-JW-A5VJ-01 3 187420301 187420301 C G RP11-211G3.3 5'UTR 0.07 TCGA-JW-A5VJ-01 3 195295997 195295997 G A APOD Missense_Mutation p.S115L 0.27 tolerated(0.57) benign(0.026) TCGA-JW-A5VJ-01 3 195509740 195509740 G A MUC4 Missense_Mutation p.S2904L 0.08 benign(0.044) TCGA-JW-A5VJ-01 3 195512162 195512162 G A MUC4 Missense_Mutation p.L2097F 0.04 unknown(0) TCGA-JW-A5VJ-01 3 33055739 33055739 C G GLB1 Missense_Mutation p.D515H 0.12 tolerated(0.15) benign(0.012) TCGA-JW-A5VJ-01 3 47037535 47037535 C T NBEAL2 Silent p.L715L 0.60 TCGA-JW-A5VJ-01 3 53845750 53845750 G A CACNA1D 3'UTR 0.38 TCGA-JW-A5VJ-01 3 62499350 62499350 G A CADPS Intron 0.45 TCGA-JW-A5VJ-01 4 111542500 111542500 C T PITX2 Silent p.K77K 0.06 TCGA-JW-A5VJ-01 4 1246210 1246210 G C CTBP1 5'Flank 0.10 TCGA-JW-A5VJ-01 4 126241227 126241227 G C FAT4 Missense_Mutation p.E1221Q 0.30 probably_damaging(1) TCGA-JW-A5VJ-01 4 153247280 153247280 G A FBXW7 Nonsense_Mutation p.Q508* 0.16 TCGA-JW-A5VJ-01 4 155470015 155470015 C T PLRG1 Missense_Mutation p.D28N 0.15 tolerated(0.36) probably_damaging(0.998) TCGA-JW-A5VJ-01 4 155506809 155506809 C G FGA Missense_Mutation p.R591T 0.35 deleterious(0.05) benign(0.046) TCGA-JW-A5VJ-01 4 157892187 157892187 C T PDGFC 5'UTR 0.07 TCGA-JW-A5VJ-01 4 169849278 169849278 C T PALLD 3'Flank 0.33 TCGA-JW-A5VJ-01 4 1742569 1742569 G A TACC3 Silent p.Q693Q 0.14 TCGA-JW-A5VJ-01 4 3318381 3318381 G C RGS12 Missense_Mutation p.E162Q 0.10 tolerated(0.16) benign(0.063) TCGA-JW-A5VJ-01 4 39465151 39465151 G A LIAS Missense_Mutation p.E107K 0.11 deleterious(0) probably_damaging(0.978) TCGA-JW-A5VJ-01 4 52861239 52861239 G A LRRC66 Missense_Mutation p.S650L 0.32 tolerated(0.21) benign(0.01) TCGA-JW-A5VJ-01 4 57377384 57377384 G C ARL9 5'UTR 0.38 TCGA-JW-A5VJ-01 4 74304004 74304004 C T AFP Missense_Mutation p.S84L 0.43 tolerated(0.06) benign(0.02) TCGA-JW-A5VJ-01 4 81122621 81122621 G C PRDM8 Missense_Mutation p.E133Q 0.09 deleterious(0) benign(0.102) TCGA-JW-A5VJ-01 4 81952680 81952680 G T BMP3 Missense_Mutation p.G81V 0.22 tolerated(0.24) benign(0.044) TCGA-JW-A5VJ-01 4 89192227 89192227 G T PPM1K Intron 0.20 TCGA-JW-A5VJ-01 5 137846286 137846286 C T ETF1 Missense_Mutation p.E351K 0.30 tolerated(0.06) benign(0.379) TCGA-JW-A5VJ-01 5 139943250 139943250 C T APBB3 Silent p.T73T 0.11 TCGA-JW-A5VJ-01 5 140517210 140517210 C T PCDHB5 Missense_Mutation p.P732S 0.32 tolerated_low_confidence(0.06) benign(0.32) TCGA-JW-A5VJ-01 5 140719613 140719613 G C PCDHGA2 Missense_Mutation p.D359H 0.31 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-JW-A5VJ-01 5 156016295 156016295 G A SGCD Missense_Mutation p.D117N 0.27 tolerated(0.39) benign(0.003) TCGA-JW-A5VJ-01 5 167984409 167984409 G C PANK3 3'UTR 0.33 TCGA-JW-A5VJ-01 5 169186751 169186751 G A DOCK2 Missense_Mutation p.E807K 0.27 deleterious(0.04) benign(0.004) TCGA-JW-A5VJ-01 5 170239373 170239373 G A GABRP 3'UTR 0.35 TCGA-JW-A5VJ-01 5 176523330 176523330 G C FGFR4 Missense_Mutation p.D663H 0.62 deleterious(0.05) probably_damaging(1) TCGA-JW-A5VJ-01 5 176863559 176863559 C T GRK6 Intron 0.35 TCGA-JW-A5VJ-01 5 60195471 60195471 G A ERCC8 Missense_Mutation p.S234L 0.27 deleterious(0.04) benign(0.068) TCGA-JW-A5VJ-01 6 107076725 107076725 G T RTN4IP1 Silent p.R58R 0.38 TCGA-JW-A5VJ-01 6 125379248 125379248 G A RNF217 Missense_Mutation p.C134Y 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-JW-A5VJ-01 6 136476786 136476786 C G PDE7B Missense_Mutation p.L201V 0.15 tolerated(0.21) possibly_damaging(0.863) TCGA-JW-A5VJ-01 6 137527314 137527314 G C IFNGR1 Missense_Mutation p.S111C 0.32 deleterious(0) probably_damaging(1) TCGA-JW-A5VJ-01 6 146275945 146275945 C T SHPRH Missense_Mutation p.D172N 0.50 tolerated_low_confidence(0.33) benign(0.001) TCGA-JW-A5VJ-01 6 159029698 159029698 G C TMEM181 Missense_Mutation p.R408T 0.61 tolerated(0.08) probably_damaging(0.999) TCGA-JW-A5VJ-01 6 167786724 167786724 G A TCP10 Missense_Mutation p.S305F 0.24 tolerated(0.1) benign(0.001) TCGA-JW-A5VJ-01 6 25606388 25606388 C T LRRC16A Missense_Mutation p.S1245F 0.28 deleterious_low_confidence(0.02) benign(0.089) TCGA-JW-A5VJ-01 6 26124126 26124126 C G HIST1H2BC Missense_Mutation p.E3Q 0.47 deleterious_low_confidence(0.05) unknown(0) TCGA-JW-A5VJ-01 6 33272263 33272263 G A TAPBP Nonsense_Mutation p.Q341* 0.14 TCGA-JW-A5VJ-01 6 38548069 38548069 G A BTBD9 Missense_Mutation p.S320F 0.50 deleterious(0.02) unknown(0) TCGA-JW-A5VJ-01 6 43020151 43020151 C T CUL7 Missense_Mutation p.E178K 0.54 tolerated(0.14) benign(0.02) TCGA-JW-A5VJ-01 7 100252740 100252740 C T ACTL6B Missense_Mutation p.E91K 0.64 tolerated(0.09) possibly_damaging(0.477) TCGA-JW-A5VJ-01 7 100855192 100855192 G A PLOD3 Silent p.F389F 0.08 TCGA-JW-A5VJ-01 7 128043784 128043784 G C IMPDH1 Missense_Mutation p.F126L 0.19 tolerated(0.07) benign(0.046) TCGA-JW-A5VJ-01 7 135661946 135661946 G C MTPN 5'UTR 0.23 TCGA-JW-A5VJ-01 7 43484020 43484020 G T HECW1 Nonsense_Mutation p.E417* 0.18 TCGA-JW-A5VJ-01 7 45124382 45124382 G C NACAD Nonsense_Mutation p.S466* 0.05 TCGA-JW-A5VJ-01 7 47408885 47408885 C T TNS3 Missense_Mutation p.G453E 0.48 deleterious(0) probably_damaging(0.963) TCGA-JW-A5VJ-01 7 6730664 6730664 C G ZNF12 Missense_Mutation p.E637Q 0.13 tolerated(0.07) possibly_damaging(0.546) TCGA-JW-A5VJ-01 7 92848495 92848495 C A HEPACAM2 Nonsense_Mutation p.E117* 0.31 TCGA-JW-A5VJ-01 7 99169959 99169959 C T ZNF655 Silent p.L111L 0.33 TCGA-JW-A5VJ-01 8 10480635 10480635 G A RP1L1 Missense_Mutation p.S26L 0.19 probably_damaging(0.998) TCGA-JW-A5VJ-01 8 1616650 1616650 G C DLGAP2 Missense_Mutation p.D576H 0.40 deleterious(0.01) possibly_damaging(0.895) TCGA-JW-A5VJ-01 8 22494060 22494060 C T BIN3 Silent p.K46K 0.34 TCGA-JW-A5VJ-01 8 26722096 26722096 G A ADRA1A Missense_Mutation p.P131S 0.36 tolerated(0.32) probably_damaging(1) TCGA-JW-A5VJ-01 8 27145094 27145094 G A TRIM35 Silent p.I485I 0.39 TCGA-JW-A5VJ-01 8 30557645 30557645 G A GSR Silent p.S216S 0.33 TCGA-JW-A5VJ-01 8 31012235 31012235 C T WRN Silent p.I1261I 0.16 TCGA-JW-A5VJ-01 8 41122839 41122839 G C SFRP1 Silent p.L264L 0.33 TCGA-JW-A5VJ-01 8 56910991 56910991 C G LYN Silent p.L379L 0.11 TCGA-JW-A5VJ-01 8 67342188 67342188 C T RRS1 Silent p.V274V 0.22 TCGA-JW-A5VJ-01 8 68026058 68026058 C T CSPP1 Silent p.L411L 0.38 TCGA-JW-A5VJ-01 9 131764003 131764003 C T NUP188 Nonsense_Mutation p.Q1347* 0.13 TCGA-JW-A5VJ-01 9 137801746 137801746 G A FCN1 Silent p.L293L 0.38 TCGA-JW-A5VJ-01 9 140051346 140051346 G A GRIN1 Silent p.K296K 0.15 TCGA-JW-A5VJ-01 9 26842620 26842620 G C CAAP1 Silent p.L255L 0.35 TCGA-JW-A5VJ-01 9 32485206 32485206 C T DDX58 Missense_Mutation p.E483K 0.28 deleterious(0) possibly_damaging(0.696) TCGA-JW-A5VJ-01 9 6007526 6007526 C T KIAA2026 Missense_Mutation p.E88K 0.10 deleterious(0.05) possibly_damaging(0.787) TCGA-JW-A5VJ-01 9 6007613 6007613 C G KIAA2026 Missense_Mutation p.E59Q 0.12 tolerated_low_confidence(0.07) benign(0.022) TCGA-JW-A5VJ-01 9 73168090 73168090 G C TRPM3 Silent p.L1108L 0.25 TCGA-JW-A5VJ-01 9 77417025 77417025 C T TRPM6 Missense_Mutation p.E600K 0.47 deleterious(0.01) possibly_damaging(0.721) TCGA-JW-A5VJ-01 9 79853265 79853265 G C VPS13A Missense_Mutation p.L621F 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-JW-A5VJ-01 9 97849228 97849228 C T C9orf3 3'UTR 0.16 TCGA-JW-A5VJ-01 X 103267770 103267770 C G H2BFWT Missense_Mutation p.E155Q 0.21 tolerated(0.07) probably_damaging(0.914) TCGA-JW-A5VJ-01 X 108867844 108867844 C T KCNE1L Missense_Mutation p.A136T 0.31 tolerated_low_confidence(0.58) benign(0.003) TCGA-JW-A5VJ-01 X 111078180 111078180 G A TRPC5 Missense_Mutation p.A622V 0.25 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VJ-01 X 11793645 11793645 C T MSL3 3'UTR 0.27 TCGA-JW-A5VJ-01 X 124097521 124097521 C T TENM1 Missense_Mutation p.D28N 0.28 tolerated_low_confidence(0.33) possibly_damaging(0.762) TCGA-JW-A5VJ-01 X 125685979 125685979 C T DCAF12L1 Missense_Mutation p.D205N 0.06 deleterious(0) probably_damaging(1) TCGA-JW-A5VJ-01 X 128913963 128913963 G A SASH3 5'UTR 0.30 TCGA-JW-A5VJ-01 X 129338364 129338364 G A ZNF280C 3'UTR 0.08 TCGA-JW-A5VJ-01 X 135328486 135328486 C G MAP7D3 Missense_Mutation p.E29Q 0.10 tolerated(0.14) benign(0.074) TCGA-JW-A5VJ-01 X 14550433 14550433 C T GLRA2 Silent p.F47F 0.14 TCGA-JW-A5VJ-01 X 1471018 1471018 G A IL3RA Silent p.E108E 0.12 TCGA-JW-A5VJ-01 X 148794829 148794829 C T MAGEA11 Nonsense_Mutation p.Q4* 0.26 TCGA-JW-A5VJ-01 X 151909461 151909461 A C CSAG1 3'UTR 0.05 TCGA-JW-A5VJ-01 X 18919625 18919625 C G PHKA2 Missense_Mutation p.R1002T 0.14 deleterious(0.02) benign(0.199) TCGA-JW-A5VJ-01 X 19553839 19553839 G A SH3KBP1 3'UTR 0.26 TCGA-JW-A5VJ-01 X 20074858 20074858 C G MAP7D2 Missense_Mutation p.E142Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VJ-01 X 24230023 24230023 G A ZFX 3'UTR 0.24 TCGA-JW-A5VJ-01 X 50653790 50653790 C T BMP15 Missense_Mutation p.L3F 0.07 tolerated(0.2) benign(0.01) TCGA-JW-A5VJ-01 X 54223543 54223543 C T WNK3 3'UTR 0.07 TCGA-JW-A5VJ-01 X 54840906 54840906 C T MAGED2 Intron 0.24 TCGA-JW-A5VJ-01 X 57620102 57620102 G A ZXDB Missense_Mutation p.D541N 0.21 deleterious(0.02) possibly_damaging(0.467) TCGA-JW-A5VJ-01 X 6451803 6451803 C T VCX3A Missense_Mutation p.E182K 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-JW-A5VJ-01 X 7812040 7812040 G A VCX Missense_Mutation p.E202K 0.06 deleterious_low_confidence(0) unknown(0) TCGA-JW-A5VK-01 10 22048515 22048515 C G DNAJC1 Missense_Mutation p.V394L 1.00 tolerated(0.13) benign(0.004) TCGA-JW-A5VK-01 10 81070690 81070690 G A ZMIZ1 Missense_Mutation p.A949T 0.92 benign(0.026) TCGA-JW-A5VK-01 10 98744690 98744690 G A C10orf12 Silent p.L1181L 1.00 TCGA-JW-A5VK-01 11 123901166 123901166 G A OR10G8 Silent p.T279T 0.89 TCGA-JW-A5VK-01 11 56085805 56085805 C T OR8K3 Missense_Mutation p.T8M 0.48 tolerated_low_confidence(0.17) benign(0.009) TCGA-JW-A5VK-01 11 61110883 61110883 T - DAK Frame_Shift_Del p.S313Lfs*12 0.36 TCGA-JW-A5VK-01 11 65375232 65375232 C T MAP3K11 Silent p.Q375Q 0.42 TCGA-JW-A5VK-01 11 70333726 70333726 G A SHANK2 Missense_Mutation p.P892L 0.11 deleterious(0) benign(0.198) TCGA-JW-A5VK-01 12 49432029 49432030 - G KMT2D Frame_Shift_Ins p.H3037Pfs*4 0.32 TCGA-JW-A5VK-01 12 49434795 49434816 TCCAGCGAGGGGCAGCGGGGTT - KMT2D Frame_Shift_Del p.K2246Ifs*11 0.52 TCGA-JW-A5VK-01 13 113720424 113720424 C G MCF2L Missense_Mutation p.A274G 0.34 tolerated(0.07) benign(0.003) TCGA-JW-A5VK-01 13 26413729 26413729 C T ATP8A2 Missense_Mutation p.L975F 0.54 deleterious(0.01) probably_damaging(0.993) TCGA-JW-A5VK-01 13 28601288 28601288 G A FLT3 Missense_Mutation p.T715I 0.58 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VK-01 13 73636019 73636025 GTATCTG - KLF5 Frame_Shift_Del p.Y95Hfs*9 0.52 TCGA-JW-A5VK-01 14 20897170 20897170 G A KLHL33 Silent p.L480L 0.51 TCGA-JW-A5VK-01 14 90872446 90872446 G A CALM1 3'UTR 0.40 TCGA-JW-A5VK-01 15 25474139 25474139 G T SNORD115-32 RNA 0.85 TCGA-JW-A5VK-01 15 64980915 64980915 G A OAZ2 Silent p.S186S 0.40 TCGA-JW-A5VK-01 16 20481025 20481025 T A ACSM2A Missense_Mutation p.F194I 0.43 deleterious(0) probably_damaging(0.943) TCGA-JW-A5VK-01 16 28468257 28468257 G A NPIPB7 Missense_Mutation p.R245C 0.45 tolerated_low_confidence(0.08) probably_damaging(0.953) TCGA-JW-A5VK-01 16 88124572 88124572 C T RP11-863P13.4 RNA 0.39 TCGA-JW-A5VK-01 17 31267987 31267987 C T TMEM98 Silent p.F219F 0.38 TCGA-JW-A5VK-01 17 43482441 43482441 G T ARHGAP27 Nonsense_Mutation p.S25* 0.36 TCGA-JW-A5VK-01 17 48445372 48445372 G A MRPL27 3'UTR 0.44 TCGA-JW-A5VK-01 17 55083724 55083724 A - SCPEP1 3'UTR 0.46 TCGA-JW-A5VK-01 18 40853812 40853812 G T SYT4 Silent p.I194I 0.46 TCGA-JW-A5VK-01 18 61747526 61747526 G A LINC00305 RNA 0.49 TCGA-JW-A5VK-01 18 71825439 71825439 C T TIMM21 Silent p.H190H 0.43 TCGA-JW-A5VK-01 19 10602878 10602878 G A KEAP1 Missense_Mutation p.R234W 0.60 deleterious(0) probably_damaging(0.96) TCGA-JW-A5VK-01 19 11917970 11917971 - T ZNF491 Frame_Shift_Ins p.E402* 0.32 TCGA-JW-A5VK-01 19 14520640 14520640 C T DDX39A Missense_Mutation p.G260S 0.50 deleterious(0.03) possibly_damaging(0.827) TCGA-JW-A5VK-01 19 19638945 19638945 C T NDUFA13 3'UTR 0.50 TCGA-JW-A5VK-01 19 36487152 36487152 G A SDHAF1 3'UTR 0.09 TCGA-JW-A5VK-01 1 151811322 151811322 G A C2CD4D Silent p.I48I 0.42 TCGA-JW-A5VK-01 1 154574963 154574963 G A ADAR Missense_Mutation p.P52L 0.38 tolerated(0.08) benign(0.005) TCGA-JW-A5VK-01 1 156883832 156883832 C T PEAR1 Missense_Mutation p.R968W 0.49 tolerated(0.16) benign(0.003) TCGA-JW-A5VK-01 1 19480331 19480331 C T UBR4 Silent p.P2187P 0.46 TCGA-JW-A5VK-01 1 212156143 212156143 C T INTS7 Missense_Mutation p.S336N 0.44 tolerated(0.33) benign(0.015) TCGA-JW-A5VK-01 1 27425682 27425682 C A SLC9A1 3'UTR 0.47 TCGA-JW-A5VK-01 1 27633121 27633122 - C WDTC1 3'UTR 0.39 TCGA-JW-A5VK-01 1 28476617 28476617 C A PTAFR Nonsense_Mutation p.E306* 0.52 TCGA-JW-A5VK-01 1 7897139 7897139 A - PER3 Frame_Shift_Del p.K1152Rfs*46 0.31 TCGA-JW-A5VK-01 20 1161794 1161794 G A TMEM74B Missense_Mutation p.R157W 0.29 deleterious(0) probably_damaging(1) TCGA-JW-A5VK-01 20 20621380 20621380 T A RALGAPA2 Missense_Mutation p.E172V 0.31 deleterious(0) benign(0.238) TCGA-JW-A5VK-01 20 257375 257375 G A C20orf96 Intron 0.58 TCGA-JW-A5VK-01 20 54573720 54573720 G A CBLN4 Missense_Mutation p.L167F 0.59 deleterious(0) possibly_damaging(0.906) TCGA-JW-A5VK-01 21 42080507 42080507 G A DSCAM Silent p.N78N 0.48 TCGA-JW-A5VK-01 2 182347104 182347104 T A ITGA4 Silent p.I286I 0.31 TCGA-JW-A5VK-01 2 225338878 225338878 G A CUL3 3'UTR 0.56 TCGA-JW-A5VK-01 2 230231807 230231807 C T DNER Silent p.A628A 0.67 TCGA-JW-A5VK-01 2 54014459 54014459 A C ERLEC1 Missense_Mutation p.S38R 0.25 deleterious(0.02) benign(0.018) TCGA-JW-A5VK-01 2 89076074 89076074 A G ANKRD36BP2 RNA 0.06 TCGA-JW-A5VK-01 3 129369973 129369973 G A TMCC1 3'UTR 0.25 TCGA-JW-A5VK-01 3 171406586 171406586 C T PLD1 Silent p.S473S 0.49 TCGA-JW-A5VK-01 4 143033699 143033699 C T INPP4B Missense_Mutation p.E758K 0.07 deleterious(0) possibly_damaging(0.831) TCGA-JW-A5VK-01 4 88036015 88036015 A G AFF1 Missense_Mutation p.K677R 0.92 tolerated(0.34) unknown(0) TCGA-JW-A5VK-01 5 108745608 108745608 T A PJA2 5'UTR 0.55 TCGA-JW-A5VK-01 5 140720392 140720392 G A PCDHGA2 Silent p.S618S 0.48 TCGA-JW-A5VK-01 5 16474720 16474720 G A FAM134B 3'UTR 0.55 TCGA-JW-A5VK-01 5 167674346 167674346 C T TENM2 Silent p.V2134V 0.52 TCGA-JW-A5VK-01 5 178053968 178053968 T G CLK4 5'UTR 0.41 TCGA-JW-A5VK-01 5 73236812 73236812 G C ARHGEF28 Missense_Mutation p.A1724P 0.45 tolerated(0.15) possibly_damaging(0.828) TCGA-JW-A5VK-01 5 73931944 73931944 C A ENC1 Missense_Mutation p.A123S 0.52 deleterious(0.01) possibly_damaging(0.679) TCGA-JW-A5VK-01 6 127797184 127797184 C T SOGA3 Missense_Mutation p.V663M 0.13 deleterious(0.01) probably_damaging(0.913) TCGA-JW-A5VK-01 6 166826326 166826326 G A RPS6KA2 Missense_Mutation p.P717L 0.45 tolerated(0.44) possibly_damaging(0.646) TCGA-JW-A5VK-01 6 52701125 52701125 C A GSTA5 Missense_Mutation p.D61Y 0.51 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VK-01 6 72970431 72970431 C A RIMS1 Missense_Mutation p.A1026E 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-JW-A5VK-01 6 73112106 73112106 G A RIMS1 3'Flank 0.52 TCGA-JW-A5VK-01 6 96656821 96656821 G C FUT9 3'UTR 0.37 TCGA-JW-A5VK-01 7 72658807 72658807 G A GTF2IRD2P1 RNA 0.18 TCGA-JW-A5VK-01 7 95750004 95750004 T C SLC25A13 3'UTR 0.05 TCGA-JW-A5VK-01 8 144995513 144995513 C T PLEC Missense_Mutation p.V2963M 0.45 probably_damaging(0.946) TCGA-JW-A5VK-01 8 145555502 145555502 G A SCRT1 3'UTR 0.33 TCGA-JW-A5VK-01 8 56015526 56015526 C G XKR4 Missense_Mutation p.Q160E 0.49 deleterious(0) probably_damaging(0.973) TCGA-JW-A5VK-01 9 123374761 123374761 C T MEGF9 Missense_Mutation p.E334K 0.49 tolerated(0.09) benign(0.428) TCGA-JW-A5VK-01 9 137620534 137620534 G A COL5A1 Missense_Mutation p.E269K 0.54 benign(0.172) TCGA-JW-A5VK-01 X 41333923 41333923 C T NYX Missense_Mutation p.A406V 0.93 tolerated(0.58) benign(0.001) TCGA-JW-A5VK-01 X 53296141 53296141 T A IQSEC2 Intron 0.83 TCGA-JW-A5VL-01 10 101090206 101090206 C T CNNM1 Silent p.I354I 0.53 TCGA-JW-A5VL-01 10 102684212 102684212 C G FAM178A Missense_Mutation p.S485C 0.39 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 10 102685753 102685753 G A FAM178A Silent p.V673V 0.36 TCGA-JW-A5VL-01 10 102896478 102896478 G A TLX1 Silent p.E267E 0.43 TCGA-JW-A5VL-01 10 103874244 103874244 G A LDB1 Intron 0.57 TCGA-JW-A5VL-01 10 103922042 103922042 G A NOLC1 3'UTR 0.54 TCGA-JW-A5VL-01 10 104849283 104849285 ATA - NT5C2 3'UTR 0.45 TCGA-JW-A5VL-01 10 105362419 105362419 C T SH3PXD2A Silent p.Q824Q 0.37 TCGA-JW-A5VL-01 10 111624695 111624695 G C XPNPEP1 3'UTR 0.62 TCGA-JW-A5VL-01 10 111637621 111637621 G A XPNPEP1 Nonsense_Mutation p.Q416* 0.34 TCGA-JW-A5VL-01 10 112541564 112541564 G A RBM20 Silent p.L399L 0.43 TCGA-JW-A5VL-01 10 112541612 112541612 C T RBM20 Silent p.S415S 0.43 TCGA-JW-A5VL-01 10 112572653 112572653 G C RBM20 Missense_Mutation p.R833T 0.40 deleterious(0.01) benign(0.168) TCGA-JW-A5VL-01 10 112581168 112581168 G C RBM20 Missense_Mutation p.E931Q 0.43 deleterious(0.01) possibly_damaging(0.848) TCGA-JW-A5VL-01 10 112581300 112581300 G A RBM20 Missense_Mutation p.E975K 0.40 deleterious(0.01) possibly_damaging(0.556) TCGA-JW-A5VL-01 10 112724698 112724698 C T SHOC2 Silent p.L194L 0.36 TCGA-JW-A5VL-01 10 11372847 11372847 G C CELF2 3'UTR 0.40 TCGA-JW-A5VL-01 10 115341870 115341870 C T HABP2 Silent p.L358L 0.57 TCGA-JW-A5VL-01 10 115922618 115922618 G A C10orf118 Missense_Mutation p.S137L 0.43 deleterious_low_confidence(0.02) benign(0.011) TCGA-JW-A5VL-01 10 116195731 116195731 G A ABLIM1 3'Flank 0.34 TCGA-JW-A5VL-01 10 12110991 12110991 C G DHTKD1 5'UTR 0.39 TCGA-JW-A5VL-01 10 12142234 12142234 C G DHTKD1 Missense_Mutation p.L577V 0.41 deleterious(0.01) probably_damaging(0.985) TCGA-JW-A5VL-01 10 121680416 121680416 G C SEC23IP Missense_Mutation p.D681H 0.46 deleterious(0.04) probably_damaging(0.989) TCGA-JW-A5VL-01 10 12237916 12237916 G C NUDT5 5'UTR 0.28 TCGA-JW-A5VL-01 10 122633397 122633397 G C WDR11 Silent p.L506L 0.32 TCGA-JW-A5VL-01 10 124013521 124013521 G A TACC2 Missense_Mutation p.E2933K 0.48 probably_damaging(0.999) TCGA-JW-A5VL-01 10 124191267 124191267 C G PLEKHA1 3'UTR 0.40 TCGA-JW-A5VL-01 10 124746889 124746889 G C PSTK Missense_Mutation p.R306T 0.36 deleterious_low_confidence(0.02) benign(0.026) TCGA-JW-A5VL-01 10 125769040 125769040 G A CHST15 3'UTR 0.58 TCGA-JW-A5VL-01 10 125804145 125804145 G A CHST15 Silent p.V279V 0.32 TCGA-JW-A5VL-01 10 126716145 126716145 G C CTBP2 Missense_Mutation p.L62V 0.53 deleterious_low_confidence(0.05) probably_damaging(0.978) TCGA-JW-A5VL-01 10 127344508 127344508 G C TEX36 Missense_Mutation p.F174L 0.38 tolerated_low_confidence(0.14) benign(0.067) TCGA-JW-A5VL-01 10 127503687 127503687 C G UROS Missense_Mutation p.E54Q 0.29 deleterious(0) possibly_damaging(0.882) TCGA-JW-A5VL-01 10 129682072 129682072 C G CLRN3 Silent p.L99L 0.41 TCGA-JW-A5VL-01 10 129899619 129899619 C T MKI67 Missense_Mutation p.R3203K 0.40 deleterious(0) probably_damaging(0.967) TCGA-JW-A5VL-01 10 13152294 13152294 C G OPTN Missense_Mutation p.Q63E 0.50 deleterious(0.02) possibly_damaging(0.478) TCGA-JW-A5VL-01 10 132902613 132902613 G A TCERG1L Missense_Mutation p.S467L 0.30 deleterious(0.01) possibly_damaging(0.631) TCGA-JW-A5VL-01 10 133784238 133784238 G C BNIP3 Missense_Mutation p.T148R 0.50 deleterious(0.03) probably_damaging(0.996) TCGA-JW-A5VL-01 10 134018963 134018963 G A DPYSL4 3'UTR 0.23 TCGA-JW-A5VL-01 10 134886526 134886526 C G GPR123 Missense_Mutation p.S187C 0.50 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-JW-A5VL-01 10 135061019 135061019 G A MIR202HG Intron 0.39 TCGA-JW-A5VL-01 10 135137782 135137782 G C CALY 3'Flank 0.32 TCGA-JW-A5VL-01 10 135345141 135345141 G C CYP2E1 Silent p.L130L 0.31 TCGA-JW-A5VL-01 10 13534813 13534813 G C BEND7 Nonsense_Mutation p.S160* 0.43 TCGA-JW-A5VL-01 10 13538864 13538864 G A BEND7 Missense_Mutation p.S106L 0.42 deleterious_low_confidence(0.04) benign(0.269) TCGA-JW-A5VL-01 10 16866937 16866937 G A CUBN 3'UTR 0.49 TCGA-JW-A5VL-01 10 17750872 17750872 C G STAM Missense_Mutation p.S436C 0.33 deleterious(0.05) possibly_damaging(0.469) TCGA-JW-A5VL-01 10 18828165 18828165 C G CACNB2 Missense_Mutation p.Q499E 0.38 tolerated(0.24) benign(0.017) TCGA-JW-A5VL-01 10 20105866 20105866 G A PLXDC2 5'UTR 0.50 TCGA-JW-A5VL-01 10 21846079 21846079 C T MLLT10 Intron 0.33 TCGA-JW-A5VL-01 10 22620161 22620161 C G BMI1 3'UTR 0.41 TCGA-JW-A5VL-01 10 22678157 22678157 G C SPAG6 Silent p.G307G 0.46 TCGA-JW-A5VL-01 10 24880833 24880833 C G ARHGAP21 Missense_Mutation p.E1329Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 10 25160966 25160966 C G PRTFDC1 Missense_Mutation p.Q122H 0.22 tolerated(0.26) benign(0.028) TCGA-JW-A5VL-01 10 27301906 27301906 C T ANKRD26 Missense_Mutation p.D1620N 0.40 tolerated(0.48) benign(0.069) TCGA-JW-A5VL-01 10 27448577 27448577 C G MASTL Silent p.V118V 0.45 TCGA-JW-A5VL-01 10 27486264 27486264 C T ACBD5 3'UTR 0.38 TCGA-JW-A5VL-01 10 28023530 28023530 C T MKX Silent p.L231L 0.38 TCGA-JW-A5VL-01 10 28821934 28821934 G T WAC 5'Flank 0.46 TCGA-JW-A5VL-01 10 30316395 30316395 C G KIAA1462 Silent p.P894P 0.44 TCGA-JW-A5VL-01 10 30747010 30747010 C T MAP3K8 Intron 0.23 TCGA-JW-A5VL-01 10 3187852 3187854 TCT - PITRM1 In_Frame_Del p.E798del 0.49 TCGA-JW-A5VL-01 10 32581511 32581511 C T EPC1 Missense_Mutation p.R243Q 0.44 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VL-01 10 32800445 32800445 C G CCDC7 Intron 0.38 TCGA-JW-A5VL-01 10 32833221 32833221 C G CCDC7 Missense_Mutation p.Q376E 0.31 tolerated(0.11) benign(0.028) TCGA-JW-A5VL-01 10 32872048 32872048 C G C10ORF68 5'UTR 0.33 TCGA-JW-A5VL-01 10 34606252 34606252 C T PARD3 Missense_Mutation p.E953K 0.36 deleterious(0) possibly_damaging(0.9) TCGA-JW-A5VL-01 10 35500776 35500776 G A CREM 3'UTR 0.33 TCGA-JW-A5VL-01 10 35927343 35927343 C G FZD8 3'UTR 0.47 TCGA-JW-A5VL-01 10 35928930 35928930 C T FZD8 Silent p.Q476Q 0.48 TCGA-JW-A5VL-01 10 43078391 43078391 C G ZNF33B RNA 0.42 TCGA-JW-A5VL-01 10 43870966 43870966 G C FXYD4 Silent p.L39L 0.34 TCGA-JW-A5VL-01 10 44112470 44112470 C G ZNF485 Missense_Mutation p.H327D 0.34 tolerated(0.07) benign(0.421) TCGA-JW-A5VL-01 10 45430487 45430487 G C TMEM72 Missense_Mutation p.E245Q 0.43 tolerated(0.05) possibly_damaging(0.777) TCGA-JW-A5VL-01 10 45499194 45499194 C A ZNF22 Silent p.L126L 0.41 TCGA-JW-A5VL-01 10 45799878 45799878 C T OR13A1 5'UTR 0.43 TCGA-JW-A5VL-01 10 49917830 49917830 C G WDFY4 Missense_Mutation p.S18C 0.36 deleterious_low_confidence(0.05) possibly_damaging(0.524) TCGA-JW-A5VL-01 10 50950930 50950930 C T OGDHL Silent p.L652L 0.41 TCGA-JW-A5VL-01 10 51050034 51050034 G A PARG Nonsense_Mutation p.Q350* 0.42 TCGA-JW-A5VL-01 10 5227083 5227083 C G AKR1CL1 5'UTR 0.35 TCGA-JW-A5VL-01 10 60027447 60027447 G C IPMK 5'UTR 0.36 TCGA-JW-A5VL-01 10 61802484 61802484 C G ANK3 Missense_Mutation p.E4367Q 0.43 probably_damaging(0.968) TCGA-JW-A5VL-01 10 61834248 61834248 C G ANK3 Missense_Mutation p.E2131Q 0.42 probably_damaging(0.968) TCGA-JW-A5VL-01 10 69957140 69957140 G C MYPN Missense_Mutation p.E1064Q 0.42 deleterious(0.02) possibly_damaging(0.493) TCGA-JW-A5VL-01 10 70182081 70182081 C T DNA2 Silent p.V952V 0.46 TCGA-JW-A5VL-01 10 71021033 71021033 C T HKDC1 Silent p.F785F 0.35 TCGA-JW-A5VL-01 10 71142457 71142457 G A HK1 Missense_Mutation p.E498K 0.36 deleterious(0.01) probably_damaging(0.951) TCGA-JW-A5VL-01 10 71912325 71912325 C G SAR1A Silent p.L168L 0.38 TCGA-JW-A5VL-01 10 72293705 72293705 G C PALD1 Missense_Mutation p.D300H 0.42 deleterious(0.01) possibly_damaging(0.834) TCGA-JW-A5VL-01 10 7327813 7327815 AAC - SFMBT2 Intron 0.47 TCGA-JW-A5VL-01 10 73970487 73970487 C T ASCC1 Intron 0.39 TCGA-JW-A5VL-01 10 74684129 74684129 C A OIT3 Missense_Mutation p.S365Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VL-01 10 74695429 74695429 C T PLA2G12B Missense_Mutation p.M178I 0.42 deleterious(0.01) possibly_damaging(0.899) TCGA-JW-A5VL-01 10 74856658 74856658 C G P4HA1 5'UTR 0.40 TCGA-JW-A5VL-01 10 75072284 75072284 C G TTC18 Missense_Mutation p.D414H 0.40 deleterious(0) probably_damaging(0.987) TCGA-JW-A5VL-01 10 79593787 79593787 C G DLG5 Missense_Mutation p.D545H 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-JW-A5VL-01 10 85984189 85984189 G A LRIT2 Silent p.I264I 0.54 TCGA-JW-A5VL-01 10 86277032 86277032 G C CCSER2 3'UTR 0.50 TCGA-JW-A5VL-01 10 86277072 86277072 G C CCSER2 3'UTR 0.52 TCGA-JW-A5VL-01 10 88196033 88196033 C T WAPAL 3'UTR 0.30 TCGA-JW-A5VL-01 10 88768653 88768653 C T RP11-96C23.10 3'Flank 0.43 TCGA-JW-A5VL-01 10 88930338 88930338 G A FAM35A Silent p.V579V 0.36 TCGA-JW-A5VL-01 10 89117879 89117879 G A NUTM2D 5'UTR 0.14 TCGA-JW-A5VL-01 10 89725606 89725606 G C PTEN 3'UTR 0.30 TCGA-JW-A5VL-01 10 90773992 90773992 G C FAS Missense_Mutation p.D265H 0.32 deleterious(0.02) possibly_damaging(0.482) TCGA-JW-A5VL-01 10 91163267 91163267 C G IFIT1 Nonsense_Mutation p.S412* 0.45 TCGA-JW-A5VL-01 10 91532517 91532517 C G KIF20B Missense_Mutation p.Q1732E 0.53 deleterious(0.01) benign(0.167) TCGA-JW-A5VL-01 10 93611064 93611064 G A TNKS2 Missense_Mutation p.G929E 0.43 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 10 94733981 94733981 C G EXOC6 Missense_Mutation p.H649D 0.50 tolerated(0.08) benign(0.024) TCGA-JW-A5VL-01 10 94836399 94836399 G T CYP26A1 Silent p.L366L 0.33 TCGA-JW-A5VL-01 10 95111499 95111499 C G MYOF Missense_Mutation p.E1196Q 0.35 deleterious(0.01) probably_damaging(0.962) TCGA-JW-A5VL-01 10 96064319 96064319 G C PLCE1 Missense_Mutation p.D1847H 0.33 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 10 96522580 96522580 G C CYP2C19 Missense_Mutation p.G40R 0.37 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 10 97096727 97096727 G A SORBS1 Silent p.L1064L 0.45 TCGA-JW-A5VL-01 10 97396862 97396862 G A ALDH18A1 Silent p.I182I 0.46 TCGA-JW-A5VL-01 10 97983584 97983584 C G BLNK Missense_Mutation p.E175Q 0.43 deleterious(0.02) possibly_damaging(0.653) TCGA-JW-A5VL-01 10 99125952 99125952 G C RRP12 Missense_Mutation p.H1144D 0.24 deleterious(0.04) benign(0.039) TCGA-JW-A5VL-01 11 1008050 1008050 G C AP2A2 Missense_Mutation p.E779Q 0.45 tolerated(0.42) benign(0.016) TCGA-JW-A5VL-01 11 101347230 101347230 G A TRPC6 Nonsense_Mutation p.Q516* 0.46 TCGA-JW-A5VL-01 11 102195673 102195673 C G BIRC3 Missense_Mutation p.P145A 0.50 tolerated(0.05) benign(0.049) TCGA-JW-A5VL-01 11 102464305 102464305 C G MMP20 Missense_Mutation p.R371T 0.28 deleterious(0.02) benign(0.442) TCGA-JW-A5VL-01 11 103043833 103043833 G A DYNC2H1 Missense_Mutation p.G1786E 0.32 probably_damaging(0.999) TCGA-JW-A5VL-01 11 1031828 1031828 G C MUC6 Nonsense_Mutation p.S114* 0.39 TCGA-JW-A5VL-01 11 10527658 10527658 G A AMPD3 3'UTR 0.48 TCGA-JW-A5VL-01 11 10628291 10628291 C G MRVI1 Missense_Mutation p.E534Q 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VL-01 11 106681104 106681104 C T GUCY1A2 Missense_Mutation p.R436Q 0.40 deleterious(0.02) possibly_damaging(0.742) TCGA-JW-A5VL-01 11 108018080 108018080 G A ACAT1 Missense_Mutation p.G416E 0.41 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 11 108129735 108129735 C T ATM Missense_Mutation p.S800F 0.48 deleterious(0) probably_damaging(0.971) TCGA-JW-A5VL-01 11 108238629 108238629 C G ATM 3'UTR 0.42 TCGA-JW-A5VL-01 11 10825087 10825087 C G EIF4G2 Missense_Mutation p.L251F 0.33 deleterious(0.01) probably_damaging(1) TCGA-JW-A5VL-01 11 1095202 1095202 G C MUC2 Missense_Mutation p.E2008Q 0.52 unknown(0) TCGA-JW-A5VL-01 11 110035239 110035239 G A ZC3H12C Missense_Mutation p.D477N 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-JW-A5VL-01 11 111168467 111168467 C G COLCA1 5'UTR 0.44 TCGA-JW-A5VL-01 11 111953676 111953676 G C C11orf57 Missense_Mutation p.E288Q 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.698) TCGA-JW-A5VL-01 11 111953993 111953993 G A C11orf57 3'UTR 0.48 TCGA-JW-A5VL-01 11 113238961 113238961 G C TTC12 3'Flank 0.34 TCGA-JW-A5VL-01 11 117067763 117067763 C G SIDT2 3'UTR 0.64 TCGA-JW-A5VL-01 11 117710540 117710540 C G FXYD6 Missense_Mutation p.E89Q 0.52 tolerated(0.3) benign(0.005) TCGA-JW-A5VL-01 11 118370615 118370615 C T KMT2A Missense_Mutation p.P2049S 0.50 probably_damaging(0.91) TCGA-JW-A5VL-01 11 118375583 118375583 G A KMT2A Missense_Mutation p.M2992I 0.40 benign(0.002) TCGA-JW-A5VL-01 11 118765965 118765965 G A BCL9L 3'UTR 0.44 TCGA-JW-A5VL-01 11 118767361 118767361 G A BCL9L 3'UTR 0.41 TCGA-JW-A5VL-01 11 118767372 118767372 G C BCL9L 3'UTR 0.39 TCGA-JW-A5VL-01 11 118769063 118769063 G C BCL9L 3'UTR 0.48 TCGA-JW-A5VL-01 11 118918983 118918983 C T HYOU1 Missense_Mutation p.E785K 0.38 deleterious(0.01) possibly_damaging(0.474) TCGA-JW-A5VL-01 11 118984878 118984878 G A C2CD2L Missense_Mutation p.G572E 0.35 tolerated(0.12) benign(0.017) TCGA-JW-A5VL-01 11 119032622 119032622 G A ABCG4 3'UTR 0.41 TCGA-JW-A5VL-01 11 119207499 119207499 C T RNF26 3'UTR 0.42 TCGA-JW-A5VL-01 11 120111078 120111078 C G POU2F3 Intron 0.51 TCGA-JW-A5VL-01 11 12023977 12023977 G C DKK3 Missense_Mutation p.A74G 0.31 deleterious(0.04) probably_damaging(0.969) TCGA-JW-A5VL-01 11 120328793 120328793 G A ARHGEF12 Missense_Mutation p.D744N 0.48 deleterious(0.03) probably_damaging(0.917) TCGA-JW-A5VL-01 11 120998545 120998545 C T TECTA Missense_Mutation p.S620L 0.39 deleterious(0.05) benign(0.278) TCGA-JW-A5VL-01 11 121037448 121037448 C T TECTA Nonsense_Mutation p.Q1849* 0.30 TCGA-JW-A5VL-01 11 122756799 122756799 G A C11orf63 Missense_Mutation p.R81Q 0.39 tolerated(0.54) benign(0.001) TCGA-JW-A5VL-01 11 123777647 123777647 G A OR8D4 Missense_Mutation p.G170E 0.24 tolerated(0.33) benign(0.052) TCGA-JW-A5VL-01 11 123810603 123810603 T C OR4D5 Missense_Mutation p.F94L 0.21 deleterious(0) benign(0.002) TCGA-JW-A5VL-01 11 124310211 124310211 G C OR8B8 Missense_Mutation p.F257L 0.32 deleterious_low_confidence(0.04) probably_damaging(0.955) TCGA-JW-A5VL-01 11 125302210 125302210 G A PKNOX2 3'UTR 0.36 TCGA-JW-A5VL-01 11 125499337 125499337 C T CHEK1 Missense_Mutation p.L136F 0.50 deleterious(0) probably_damaging(0.947) TCGA-JW-A5VL-01 11 125546339 125546339 C T ACRV1 Missense_Mutation p.M196I 0.42 tolerated(0.08) probably_damaging(0.998) TCGA-JW-A5VL-01 11 125893310 125893310 G T CDON Missense_Mutation p.S21Y 0.54 deleterious(0.01) possibly_damaging(0.873) TCGA-JW-A5VL-01 11 128675282 128675282 G A FLI1 Missense_Mutation p.R226K 0.50 tolerated(0.07) benign(0.066) TCGA-JW-A5VL-01 11 128709914 128709914 G C KCNJ1 Missense_Mutation p.F94L 0.50 tolerated(1) benign(0) TCGA-JW-A5VL-01 11 129729845 129729845 C T TMEM45B 3'UTR 0.33 TCGA-JW-A5VL-01 11 1298482 1298482 C T TOLLIP Silent p.G204G 0.41 TCGA-JW-A5VL-01 11 130103259 130103259 C A ZBTB44 3'UTR 0.22 TCGA-JW-A5VL-01 11 130319206 130319206 C G ADAMTS15 Missense_Mutation p.S113W 0.41 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 11 13409667 13409667 G - BTBD10 3'UTR 0.25 TCGA-JW-A5VL-01 11 15098849 15098849 G C CALCB Missense_Mutation p.R81T 0.37 deleterious(0) probably_damaging(0.968) TCGA-JW-A5VL-01 11 17097005 17097005 C G RPS13 Missense_Mutation p.R106T 0.33 tolerated(0.05) probably_damaging(0.924) TCGA-JW-A5VL-01 11 17522622 17522622 C G USH1C Missense_Mutation p.E786Q 0.39 deleterious_low_confidence(0) possibly_damaging(0.748) TCGA-JW-A5VL-01 11 17522649 17522649 C A USH1C Missense_Mutation p.G777W 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-JW-A5VL-01 11 17799376 17799376 G C KCNC1 Intron 0.31 TCGA-JW-A5VL-01 11 18313229 18313229 G A HPS5 Missense_Mutation p.R734W 0.26 tolerated(0.2) benign(0.005) TCGA-JW-A5VL-01 11 18359719 18359719 C T GTF2H1 Silent p.I137I 0.48 TCGA-JW-A5VL-01 11 1855798 1855798 G C SYT8 5'UTR 0.27 TCGA-JW-A5VL-01 11 18731108 18731108 C T IGSF22 Missense_Mutation p.E942K 0.30 tolerated(0.53) possibly_damaging(0.801) TCGA-JW-A5VL-01 11 18733886 18733886 G A IGSF22 Missense_Mutation p.S714L 0.42 tolerated(0.1) benign(0.011) TCGA-JW-A5VL-01 11 198241 198241 C G ODF3 Nonsense_Mutation p.S118* 0.28 TCGA-JW-A5VL-01 11 20101720 20101720 G C NAV2 Missense_Mutation p.E1820Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VL-01 11 20623184 20623184 G A SLC6A5 Silent p.P171P 0.45 TCGA-JW-A5VL-01 11 20676353 20676353 G C SLC6A5 Missense_Mutation p.G778A 0.40 deleterious(0.03) benign(0.135) TCGA-JW-A5VL-01 11 211253 211253 C T RIC8A Silent p.L291L 0.07 TCGA-JW-A5VL-01 11 26705375 26705375 G T SLC5A12 Missense_Mutation p.H413N 0.32 tolerated(0.11) possibly_damaging(0.491) TCGA-JW-A5VL-01 11 27018533 27018533 G C FIBIN 3'UTR 0.37 TCGA-JW-A5VL-01 11 28104435 28104435 C T KIF18A Missense_Mutation p.M410I 0.41 tolerated(0.35) benign(0.013) TCGA-JW-A5VL-01 11 30432210 30432210 C G MPPED2 3'UTR 0.33 TCGA-JW-A5VL-01 11 3050644 3050644 G C CARS Silent p.L277L 0.44 TCGA-JW-A5VL-01 11 31482222 31482222 C T IMMP1L Missense_Mutation p.D49N 0.46 tolerated(0.33) probably_damaging(0.995) TCGA-JW-A5VL-01 11 31810431 31810431 G A PAX6 3'UTR 0.40 TCGA-JW-A5VL-01 11 31832557 31832557 C T PAX6 5'UTR 0.37 TCGA-JW-A5VL-01 11 31839412 31839412 C G PAX6 5'UTR 0.52 TCGA-JW-A5VL-01 11 320663 320663 C G IFITM3 Missense_Mutation p.E51Q 0.29 deleterious(0.02) possibly_damaging(0.873) TCGA-JW-A5VL-01 11 32975573 32975573 G C QSER1 Missense_Mutation p.D1321H 0.47 deleterious(0) possibly_damaging(0.728) TCGA-JW-A5VL-01 11 33113844 33113844 G C CSTF3 Missense_Mutation p.S473C 0.37 deleterious(0) possibly_damaging(0.895) TCGA-JW-A5VL-01 11 34988258 34988258 C T PDHX Missense_Mutation p.T238I 0.41 tolerated(0.07) benign(0.013) TCGA-JW-A5VL-01 11 35492237 35492237 C G PAMR1 Missense_Mutation p.Q208H 0.44 tolerated(0.12) possibly_damaging(0.473) TCGA-JW-A5VL-01 11 36596661 36596661 G C RAG1 Missense_Mutation p.D603H 0.53 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-JW-A5VL-01 11 3848823 3848823 G C RHOG Missense_Mutation p.I182M 0.40 tolerated(0.12) benign(0.082) TCGA-JW-A5VL-01 11 40135861 40135861 C T LRRC4C 3'UTR 0.60 TCGA-JW-A5VL-01 11 4159525 4159525 C G RRM1 Nonsense_Mutation p.S764* 0.31 TCGA-JW-A5VL-01 11 43911305 43911305 G A ALKBH3 Silent p.V99V 0.36 TCGA-JW-A5VL-01 11 45241295 45241295 C T PRDM11 Silent p.R243R 0.31 TCGA-JW-A5VL-01 11 46388884 46388884 C T DGKZ Missense_Mutation p.P258S 0.58 tolerated(0.13) benign(0.006) TCGA-JW-A5VL-01 11 46389291 46389291 G C DGKZ Missense_Mutation p.R309S 0.42 deleterious(0.03) benign(0.04) TCGA-JW-A5VL-01 11 46771957 46771957 C G CKAP5 Missense_Mutation p.K1857N 0.38 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 11 47297526 47297526 G C MADD Missense_Mutation p.E246Q 0.45 deleterious(0.01) benign(0.303) TCGA-JW-A5VL-01 11 47609701 47609701 C T FAM180B Silent p.H130H 0.41 TCGA-JW-A5VL-01 11 48347189 48347189 C G OR4C3 Missense_Mutation p.L233V 0.23 tolerated(0.29) possibly_damaging(0.727) TCGA-JW-A5VL-01 11 48347369 48347369 G C OR4C3 Missense_Mutation p.D293H 0.24 deleterious(0) probably_damaging(0.983) TCGA-JW-A5VL-01 11 4870037 4870037 G C OR51S1 Missense_Mutation p.I134M 0.46 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 11 5012686 5012686 C G MMP26 Silent p.V185V 0.42 TCGA-JW-A5VL-01 11 5529891 5529891 C G UBQLN3 Missense_Mutation p.D300H 0.52 deleterious(0.02) benign(0.077) TCGA-JW-A5VL-01 11 5537435 5537435 G C UBQLNL Silent p.L79L 0.42 TCGA-JW-A5VL-01 11 55579658 55579658 C G OR5L1 Missense_Mutation p.S239C 0.47 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VL-01 11 55861422 55861422 C T OR8I2 Silent p.I213I 0.44 TCGA-JW-A5VL-01 11 56020110 56020110 G C OR5T3 Missense_Mutation p.L145F 0.42 deleterious(0.02) possibly_damaging(0.637) TCGA-JW-A5VL-01 11 56468523 56468523 C T OR9G1 Silent p.I220I 0.21 TCGA-JW-A5VL-01 11 57075938 57075938 G A TNKS1BP1 Missense_Mutation p.S1416L 0.40 tolerated(0.37) benign(0.007) TCGA-JW-A5VL-01 11 57080766 57080766 C T TNKS1BP1 Missense_Mutation p.A466T 0.45 tolerated(0.11) benign(0.007) TCGA-JW-A5VL-01 11 57310724 57310724 G A SMTNL1 Silent p.Q221Q 0.48 TCGA-JW-A5VL-01 11 57310740 57310740 G C SMTNL1 Missense_Mutation p.D227H 0.53 deleterious(0) possibly_damaging(0.87) TCGA-JW-A5VL-01 11 57480085 57480085 G A TMX2 5'UTR 0.40 TCGA-JW-A5VL-01 11 57564334 57564334 C T CTNND1 Missense_Mutation p.H276Y 0.37 tolerated(0.86) benign(0.003) TCGA-JW-A5VL-01 11 57971172 57971172 G A OR1S2 Missense_Mutation p.S161L 0.35 deleterious(0.05) benign(0.39) TCGA-JW-A5VL-01 11 5799825 5799825 G A OR52N5 Missense_Mutation p.H14Y 0.43 tolerated(0.63) benign(0) TCGA-JW-A5VL-01 11 58275441 58275441 G A OR5B21 Silent p.I46I 0.34 TCGA-JW-A5VL-01 11 58660238 58660238 G A GLYATL1P2 RNA 0.51 TCGA-JW-A5VL-01 11 58975175 58975175 C T DTX4 3'UTR 0.39 TCGA-JW-A5VL-01 11 591399 591399 C G PHRF1 Missense_Mutation p.P146A 0.37 deleterious(0.01) probably_damaging(0.954) TCGA-JW-A5VL-01 11 59271208 59271208 C T OR4D11 Missense_Mutation p.R54C 0.41 tolerated(0.08) benign(0.009) TCGA-JW-A5VL-01 11 6048725 6048725 G C OR56A1 Silent p.L70L 0.36 TCGA-JW-A5VL-01 11 60702791 60702791 C T TMEM132A Missense_Mutation p.S636L 0.40 deleterious(0.03) probably_damaging(0.933) TCGA-JW-A5VL-01 11 61018764 61018764 C G PGA5 3'UTR 0.45 TCGA-JW-A5VL-01 11 61049276 61049276 C G VWCE Missense_Mutation p.D257H 0.49 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VL-01 11 61555519 61555519 C G MYRF 3'UTR 0.36 TCGA-JW-A5VL-01 11 61560225 61560225 G C FEN1 5'UTR 0.60 TCGA-JW-A5VL-01 11 61665758 61665758 C T RAB3IL1 Missense_Mutation p.E381K 0.15 deleterious(0) possibly_damaging(0.881) TCGA-JW-A5VL-01 11 62342669 62342669 C T TUT1 Missense_Mutation p.R879Q 0.30 tolerated(0.8) benign(0) TCGA-JW-A5VL-01 11 62363281 62363281 C G MTA2 Missense_Mutation p.K399N 0.43 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 11 62433026 62433026 C T C11orf48 Intron 0.35 TCGA-JW-A5VL-01 11 62434026 62434026 C T METTL12 Missense_Mutation p.P76S 0.56 tolerated(0.06) possibly_damaging(0.666) TCGA-JW-A5VL-01 11 62434345 62434345 C G METTL12 Nonsense_Mutation p.S182* 0.30 TCGA-JW-A5VL-01 11 62434438 62434438 C T METTL12 Missense_Mutation p.S213F 0.44 tolerated(0.09) benign(0.007) TCGA-JW-A5VL-01 11 62434674 62434674 C T METTL12 3'UTR 0.39 TCGA-JW-A5VL-01 11 6260408 6260408 C T CNGA4 5'UTR 0.39 TCGA-JW-A5VL-01 11 63487457 63487457 G C RTN3 Missense_Mutation p.D495H 0.37 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 11 63765502 63765502 C G OTUB1 3'UTR 0.46 TCGA-JW-A5VL-01 11 63886395 63886395 C T FLRT1 3'UTR 0.50 TCGA-JW-A5VL-01 11 63992160 63992160 C T TRPT1 Silent p.E121E 0.39 TCGA-JW-A5VL-01 11 64052100 64052100 C T BAD 5'UTR 0.48 TCGA-JW-A5VL-01 11 6412652 6412652 C G SMPD1 Missense_Mutation p.I119M 0.34 tolerated(0.21) possibly_damaging(0.521) TCGA-JW-A5VL-01 11 64361112 64361112 G C SLC22A12 Missense_Mutation p.E223Q 0.07 deleterious(0.03) possibly_damaging(0.447) TCGA-JW-A5VL-01 11 64594232 64594232 G A CDC42BPG Missense_Mutation p.S1475F 0.46 deleterious(0.01) probably_damaging(0.979) TCGA-JW-A5VL-01 11 64594598 64594598 G A CDC42BPG Missense_Mutation p.S1438L 0.50 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VL-01 11 64594862 64594862 C T CDC42BPG Missense_Mutation p.E1387K 0.42 tolerated(0.27) probably_damaging(0.994) TCGA-JW-A5VL-01 11 64676516 64676516 C T ATG2A Missense_Mutation p.E771K 0.44 tolerated(0.7) benign(0.016) TCGA-JW-A5VL-01 11 64676820 64676820 C T ATG2A Silent p.G709G 0.38 TCGA-JW-A5VL-01 11 64677261 64677261 C T ATG2A Missense_Mutation p.E667K 0.48 deleterious(0) probably_damaging(0.983) TCGA-JW-A5VL-01 11 64679412 64679412 G T ATG2A Nonsense_Mutation p.S377* 0.43 TCGA-JW-A5VL-01 11 64899041 64899041 G A SYVN1 Silent p.L186L 0.42 TCGA-JW-A5VL-01 11 64974261 64974261 G A CAPN1 Missense_Mutation p.D526N 0.50 tolerated(0.23) benign(0.441) TCGA-JW-A5VL-01 11 6498963 6498963 G A ARFIP2 Silent p.F285F 0.44 TCGA-JW-A5VL-01 11 65089625 65089625 G C CDC42EP2 3'UTR 0.38 TCGA-JW-A5VL-01 11 65618550 65618550 G C SNX32 Missense_Mutation p.E210Q 0.42 tolerated(0.12) possibly_damaging(0.502) TCGA-JW-A5VL-01 11 65715065 65715065 G C TSGA10IP RNA 0.50 TCGA-JW-A5VL-01 11 65733421 65733421 G A SART1 Missense_Mutation p.E268K 0.45 deleterious(0) probably_damaging(0.992) TCGA-JW-A5VL-01 11 65735054 65735054 G C SART1 Missense_Mutation p.E476Q 0.38 tolerated(0.14) benign(0.01) TCGA-JW-A5VL-01 11 6580204 6580204 C T DNHD1 Missense_Mutation p.S3095L 0.43 benign(0.119) TCGA-JW-A5VL-01 11 66033433 66033433 C T KLC2 Missense_Mutation p.R518W 0.32 deleterious_low_confidence(0) benign(0.368) TCGA-JW-A5VL-01 11 66113245 66113245 C G B3GNT1 3'UTR 0.36 TCGA-JW-A5VL-01 11 66244073 66244073 C T PELI3 3'UTR 0.47 TCGA-JW-A5VL-01 11 66283047 66283047 G C BBS1 Missense_Mutation p.E157Q 0.17 tolerated(0.1) benign(0.219) TCGA-JW-A5VL-01 11 66322622 66322622 C A CTD-3074O7.2 3'Flank 0.28 TCGA-JW-A5VL-01 11 66322768 66322768 C G CTD-3074O7.2 3'Flank 0.35 TCGA-JW-A5VL-01 11 6643167 6643167 G A DCHS1 Missense_Mutation p.S3247L 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-JW-A5VL-01 11 66807534 66807534 G C SYT12 Missense_Mutation p.E161Q 0.42 tolerated(0.16) benign(0.002) TCGA-JW-A5VL-01 11 67049187 67049187 G C ADRBK1 Missense_Mutation p.D272H 0.46 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 11 67269865 67269865 C T PITPNM1 Missense_Mutation p.E105K 0.55 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 11 6740012 6740012 C T GVINP1 RNA 0.25 TCGA-JW-A5VL-01 11 67434463 67434463 C G ALDH3B2 5'UTR 0.50 TCGA-JW-A5VL-01 11 6789970 6789970 G A OR2AG2 Silent p.F73F 0.40 TCGA-JW-A5VL-01 11 67933407 67933407 C T SUV420H1 Intron 0.38 TCGA-JW-A5VL-01 11 6953894 6953894 G C ZNF215 Missense_Mutation p.E131Q 0.39 deleterious(0.04) benign(0.089) TCGA-JW-A5VL-01 11 7022556 7022556 C G ZNF214 Missense_Mutation p.E120Q 0.34 tolerated(0.55) benign(0.272) TCGA-JW-A5VL-01 11 71212397 71212397 G C NADSYN1 Nonstop_Mutation p.*707Sext*26 0.48 TCGA-JW-A5VL-01 11 71710924 71710924 G C IL18BP 5'UTR 0.35 TCGA-JW-A5VL-01 11 71724229 71724229 C T NUMA1 Silent p.L1440L 0.53 TCGA-JW-A5VL-01 11 73020642 73020642 C T ARHGEF17 Missense_Mutation p.S320L 0.38 deleterious_low_confidence(0.05) benign(0.001) TCGA-JW-A5VL-01 11 73814626 73814626 G C C2CD3 Missense_Mutation p.I710M 0.50 deleterious(0.02) benign(0.393) TCGA-JW-A5VL-01 11 73965369 73965369 C G PPME1 3'UTR 0.39 TCGA-JW-A5VL-01 11 74554082 74554082 G A XRRA1 3'UTR 0.29 TCGA-JW-A5VL-01 11 7488209 7488209 C T SYT9 3'UTR 0.64 TCGA-JW-A5VL-01 11 75439952 75439952 C G MOGAT2 Missense_Mutation p.I256M 0.42 deleterious(0.01) possibly_damaging(0.774) TCGA-JW-A5VL-01 11 76368683 76368683 C G LRRC32 3'UTR 0.50 TCGA-JW-A5VL-01 11 76371754 76371754 C G LRRC32 Missense_Mutation p.E295Q 0.31 tolerated(0.18) benign(0.011) TCGA-JW-A5VL-01 11 78387290 78387290 C T TENM4 Silent p.T1801T 0.38 TCGA-JW-A5VL-01 11 788163 788163 C T CEND1 Silent p.L138L 0.54 TCGA-JW-A5VL-01 11 821706 821706 A G PNPLA2 Missense_Mutation p.N89S 0.42 tolerated(0.06) possibly_damaging(0.842) TCGA-JW-A5VL-01 11 82879498 82879498 C T PCF11 Silent p.F707F 0.47 TCGA-JW-A5VL-01 11 85371510 85371510 G C CREBZF 3'Flank 0.42 TCGA-JW-A5VL-01 11 86520179 86520179 C T PRSS23 3'UTR 0.27 TCGA-JW-A5VL-01 11 86520770 86520770 C T PRSS23 3'UTR 0.36 TCGA-JW-A5VL-01 11 8707066 8707066 C T RPL27A Intron 0.54 TCGA-JW-A5VL-01 11 8714978 8714978 C A ST5 3'UTR 0.48 TCGA-JW-A5VL-01 11 88300278 88300278 C G GRM5 Missense_Mutation p.R858T 0.26 deleterious(0.02) benign(0.445) TCGA-JW-A5VL-01 11 88781046 88781046 G A GRM5 5'UTR 0.46 TCGA-JW-A5VL-01 11 89774724 89774724 G A TRIM49C 3'UTR 0.15 TCGA-JW-A5VL-01 11 92616394 92616394 G C FAT3 Missense_Mutation p.G4258R 0.41 benign(0.001) TCGA-JW-A5VL-01 11 94282589 94282589 G C FUT4 3'UTR 0.53 TCGA-JW-A5VL-01 11 94354200 94354200 G A PIWIL4 3'UTR 0.67 TCGA-JW-A5VL-01 11 94354201 94354201 A T PIWIL4 3'UTR 0.67 TCGA-JW-A5VL-01 11 94730884 94730884 G C KDM4D Missense_Mutation p.Q116H 0.48 tolerated(0.15) benign(0.001) TCGA-JW-A5VL-01 11 94731840 94731840 C T KDM4D Missense_Mutation p.S435F 0.41 tolerated(0.06) benign(0.002) TCGA-JW-A5VL-01 11 94760060 94760060 C G KDM4E Missense_Mutation p.Q447E 0.36 tolerated_low_confidence(0.95) benign(0) TCGA-JW-A5VL-01 11 94908718 94908718 T A SESN3 Nonsense_Mutation p.R446* 0.46 TCGA-JW-A5VL-01 11 94917523 94917523 C T SESN3 Intron 0.32 TCGA-JW-A5VL-01 11 95724713 95724713 G A MAML2 Missense_Mutation p.L772F 0.29 unknown(0) TCGA-JW-A5VL-01 11 9851041 9851041 G C SBF2 Missense_Mutation p.P1219A 0.45 tolerated(0.1) benign(0.001) TCGA-JW-A5VL-01 11 9879898 9879898 C T SBF2 Missense_Mutation p.D659N 0.39 deleterious(0) probably_damaging(0.93) TCGA-JW-A5VL-01 12 1005527 1005527 C G WNK1 Missense_Mutation p.F1958L 0.47 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VL-01 12 100594632 100594632 G T ACTR6 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-JW-A5VL-01 12 100617638 100617638 G A ACTR6 Missense_Mutation p.R379K 0.40 tolerated(0.47) probably_damaging(0.987) TCGA-JW-A5VL-01 12 100657593 100657593 C G DEPDC4 Missense_Mutation p.R79T 0.40 deleterious(0.01) probably_damaging(0.955) TCGA-JW-A5VL-01 12 101521916 101521916 C G ANO4 3'UTR 0.44 TCGA-JW-A5VL-01 12 10171159 10171159 G C CLEC12B 3'UTR 0.42 TCGA-JW-A5VL-01 12 102505983 102505983 G C NUP37 Missense_Mutation p.Q62E 0.44 tolerated(1) benign(0.001) TCGA-JW-A5VL-01 12 104238044 104238044 G T RP11-650K20.3 3'UTR 0.43 TCGA-JW-A5VL-01 12 107191781 107191781 G C RIC8B Intron 0.27 TCGA-JW-A5VL-01 12 108600142 108600142 G C WSCD2 Missense_Mutation p.K153N 0.43 deleterious(0) probably_damaging(0.971) TCGA-JW-A5VL-01 12 108685989 108685989 G A CMKLR1 Missense_Mutation p.R251C 0.47 deleterious(0) probably_damaging(0.993) TCGA-JW-A5VL-01 12 108923992 108923992 C G SART3 Missense_Mutation p.K614N 0.46 tolerated(0.08) benign(0.104) TCGA-JW-A5VL-01 12 109270566 109270566 G C DAO 5'Flank 0.41 TCGA-JW-A5VL-01 12 110367920 110367920 G C GIT2 3'UTR 0.49 TCGA-JW-A5VL-01 12 110782767 110782767 C G ATP2A2 Missense_Mutation p.F866L 0.44 tolerated(0.1) benign(0.005) TCGA-JW-A5VL-01 12 111318975 111318975 C G CCDC63 Missense_Mutation p.S243C 0.36 tolerated(0.19) benign(0.036) TCGA-JW-A5VL-01 12 111893951 111893951 G C ATXN2 Missense_Mutation p.S1209C 0.36 probably_damaging(0.971) TCGA-JW-A5VL-01 12 112486241 112486241 C G NAA25 Missense_Mutation p.E579Q 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-JW-A5VL-01 12 112499082 112499082 C G NAA25 Silent p.L420L 0.37 TCGA-JW-A5VL-01 12 112530885 112530885 C T NAA25 Silent p.L38L 0.53 TCGA-JW-A5VL-01 12 113742156 113742156 G C SLC8B1 Silent p.L509L 0.44 TCGA-JW-A5VL-01 12 117610280 117610280 C G FBXO21 Missense_Mutation p.E337Q 0.39 tolerated(0.38) benign(0.048) TCGA-JW-A5VL-01 12 118852228 118852228 C G SUDS3 Nonsense_Mutation p.S326* 0.36 TCGA-JW-A5VL-01 12 120518757 120518757 G A CCDC64 Missense_Mutation p.E459K 0.54 deleterious(0.01) benign(0.312) TCGA-JW-A5VL-01 12 121176978 121176978 C T ACADS Silent p.A355A 0.47 TCGA-JW-A5VL-01 12 121177133 121177133 C G ACADS Missense_Mutation p.T374R 0.40 tolerated(0.82) possibly_damaging(0.616) TCGA-JW-A5VL-01 12 122294313 122294313 C A HPD Splice_Site p.X81_splice 0.40 TCGA-JW-A5VL-01 12 122361672 122361672 G A WDR66 Missense_Mutation p.E175K 0.24 tolerated(0.13) benign(0.003) TCGA-JW-A5VL-01 12 122862424 122862424 C T CLIP1 Missense_Mutation p.D57N 0.34 tolerated(0.14) probably_damaging(0.982) TCGA-JW-A5VL-01 12 123187019 123187019 G C HCAR2 Missense_Mutation p.S271W 0.26 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VL-01 12 123200473 123200473 G C HCAR3 Missense_Mutation p.S271W 0.12 deleterious(0.01) probably_damaging(1) TCGA-JW-A5VL-01 12 123470037 123470037 G C PITPNM2 3'UTR 0.39 TCGA-JW-A5VL-01 12 123893578 123893578 G A SETD8 3'UTR 0.36 TCGA-JW-A5VL-01 12 123920680 123920680 G A RILPL2 Silent p.L96L 0.58 TCGA-JW-A5VL-01 12 124156119 124156119 G A TCTN2 Missense_Mutation p.E50K 0.42 deleterious(0.05) possibly_damaging(0.588) TCGA-JW-A5VL-01 12 124428832 124428832 C G CCDC92 Silent p.S7S 0.28 TCGA-JW-A5VL-01 12 124498173 124498173 C G ZNF664 3'UTR 0.52 TCGA-JW-A5VL-01 12 124821712 124821712 G A NCOR2 Missense_Mutation p.S1901F 0.43 probably_damaging(0.929) TCGA-JW-A5VL-01 12 124862910 124862910 C T NCOR2 Silent p.R680R 0.35 TCGA-JW-A5VL-01 12 125279761 125279761 C G SCARB1 Missense_Mutation p.M394I 0.36 tolerated(1) benign(0.002) TCGA-JW-A5VL-01 12 125834468 125834468 C G TMEM132B Missense_Mutation p.R175G 0.42 deleterious(0) possibly_damaging(0.703) TCGA-JW-A5VL-01 12 132250835 132250835 G C SFSWAP Missense_Mutation p.E708D 0.27 tolerated(0.3) benign(0.021) TCGA-JW-A5VL-01 12 132425950 132425950 G A PUS1 Missense_Mutation p.E220K 0.46 tolerated(0.11) benign(0.038) TCGA-JW-A5VL-01 12 13248633 13248633 C T GSG1 Intron 0.52 TCGA-JW-A5VL-01 12 13248653 13248653 C G GSG1 Intron 0.56 TCGA-JW-A5VL-01 12 13248677 13248677 C G GSG1 Intron 0.50 TCGA-JW-A5VL-01 12 132504700 132504700 C G EP400 Missense_Mutation p.P1462A 0.50 unknown(0) TCGA-JW-A5VL-01 12 133272473 133272473 C G PXMP2 Missense_Mutation p.F80L 0.34 tolerated(0.51) benign(0.004) TCGA-JW-A5VL-01 12 133384852 133384852 G C GOLGA3 Missense_Mutation p.S268C 0.43 tolerated_low_confidence(0.13) benign(0.022) TCGA-JW-A5VL-01 12 14975933 14975933 C T C12orf60 Missense_Mutation p.H22Y 0.38 tolerated(0.23) benign(0.013) TCGA-JW-A5VL-01 12 14993997 14993997 G C ART4 Missense_Mutation p.Q79E 0.52 tolerated(0.18) benign(0.044) TCGA-JW-A5VL-01 12 15773321 15773321 C G EPS8 3'UTR 0.44 TCGA-JW-A5VL-01 12 1910285 1910285 C T CACNA2D4 Splice_Site p.X931_splice 0.51 TCGA-JW-A5VL-01 12 22839219 22839219 C T ETNK1 3'UTR 0.42 TCGA-JW-A5VL-01 12 25699333 25699333 C G IFLTD1 Missense_Mutation p.E156Q 0.44 deleterious(0.04) possibly_damaging(0.768) TCGA-JW-A5VL-01 12 26709260 26709260 C G ITPR2 Missense_Mutation p.E1624Q 0.48 deleterious(0) probably_damaging(0.915) TCGA-JW-A5VL-01 12 27156275 27156275 C G TM7SF3 Missense_Mutation p.R47T 0.36 deleterious(0.04) benign(0.118) TCGA-JW-A5VL-01 12 27475354 27475354 C T STK38L Missense_Mutation p.S454F 0.39 deleterious(0) benign(0.049) TCGA-JW-A5VL-01 12 28459678 28459678 C T CCDC91 Nonsense_Mutation p.Q91* 0.59 TCGA-JW-A5VL-01 12 2968012 2968012 G C FOXM1 Nonsense_Mutation p.S733* 0.34 TCGA-JW-A5VL-01 12 39046257 39046257 C A CPNE8 3'UTR 0.32 TCGA-JW-A5VL-01 12 402293 402293 C G KDM5A Missense_Mutation p.D1500H 0.56 deleterious(0.01) probably_damaging(0.99) TCGA-JW-A5VL-01 12 40671955 40671955 G A LRRK2 Silent p.V711V 0.45 TCGA-JW-A5VL-01 12 41374753 41374753 G T CNTN1 Missense_Mutation p.R616I 0.53 tolerated(0.18) possibly_damaging(0.582) TCGA-JW-A5VL-01 12 41966994 41966994 G A PDZRN4 Missense_Mutation p.E805K 0.30 tolerated(0.18) benign(0.146) TCGA-JW-A5VL-01 12 43840473 43840473 C G ADAMTS20 Missense_Mutation p.D708H 0.47 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 12 44605135 44605135 C G TMEM117 Missense_Mutation p.F191L 0.41 tolerated(0.6) benign(0.001) TCGA-JW-A5VL-01 12 48131380 48131380 G C RAPGEF3 Silent p.L914L 0.49 TCGA-JW-A5VL-01 12 48368503 48368503 C G COL2A1 Missense_Mutation p.E1343D 0.38 unknown(0) TCGA-JW-A5VL-01 12 48393822 48393822 C T COL2A1 Missense_Mutation p.D58N 0.29 unknown(0) TCGA-JW-A5VL-01 12 48438734 48438734 C G SENP1 3'UTR 0.42 TCGA-JW-A5VL-01 12 4920615 4920615 G A KCNA6 Missense_Mutation p.E470K 0.37 deleterious(0.03) benign(0.278) TCGA-JW-A5VL-01 12 4922454 4922454 C A KCNA6 3'UTR 0.33 TCGA-JW-A5VL-01 12 49418679 49418679 C A KMT2D Missense_Mutation p.D5279Y 0.40 unknown(0) TCGA-JW-A5VL-01 12 49459141 49459141 C G RHEBL1 Missense_Mutation p.E152Q 0.37 tolerated(0.48) benign(0.179) TCGA-JW-A5VL-01 12 49666945 49666945 G C TUBA1C Missense_Mutation p.E429Q 0.41 deleterious_low_confidence(0.02) benign(0.058) TCGA-JW-A5VL-01 12 49689217 49689217 C G PRPH Silent p.L78L 0.50 TCGA-JW-A5VL-01 12 49717669 49717669 C T TROAP Silent p.L62L 0.45 TCGA-JW-A5VL-01 12 49718069 49718069 C T TROAP Intron 0.60 TCGA-JW-A5VL-01 12 49720471 49720471 C G TROAP Nonsense_Mutation p.S246* 0.39 TCGA-JW-A5VL-01 12 50028990 50028990 G A PRPF40B Silent p.Q370Q 0.31 TCGA-JW-A5VL-01 12 50264376 50264376 C T FAIM2 Missense_Mutation p.E288K 0.43 deleterious(0) probably_damaging(0.956) TCGA-JW-A5VL-01 12 50350915 50350915 G T AQP2 3'UTR 0.39 TCGA-JW-A5VL-01 12 50357352 50357352 C T AQP5 Silent p.F147F 0.37 TCGA-JW-A5VL-01 12 51064986 51064986 G A DIP2B Missense_Mutation p.E149K 0.32 deleterious(0.05) possibly_damaging(0.793) TCGA-JW-A5VL-01 12 51065063 51065063 G C DIP2B Missense_Mutation p.W174C 0.46 deleterious(0.02) probably_damaging(0.99) TCGA-JW-A5VL-01 12 51319145 51319145 C T METTL7A Silent p.I108I 0.46 TCGA-JW-A5VL-01 12 52647411 52647411 C T KRT7 3'Flank 0.41 TCGA-JW-A5VL-01 12 52756725 52756725 C G KRT85 Missense_Mutation p.E330D 0.39 tolerated(1) probably_damaging(0.987) TCGA-JW-A5VL-01 12 52793840 52793840 C G KRT82 Missense_Mutation p.E291Q 0.42 deleterious(0.02) benign(0.036) TCGA-JW-A5VL-01 12 52980737 52980737 C G KRT72 Silent p.V446V 0.52 TCGA-JW-A5VL-01 12 52981579 52981579 C T KRT72 Silent p.L382L 0.36 TCGA-JW-A5VL-01 12 53072464 53072464 C T KRT1 Missense_Mutation p.R223K 0.52 tolerated(0.98) benign(0.138) TCGA-JW-A5VL-01 12 53162457 53162457 G A KRT76 3'UTR 0.34 TCGA-JW-A5VL-01 12 53162761 53162761 G A KRT76 Silent p.V551V 0.38 TCGA-JW-A5VL-01 12 53162858 53162858 G C KRT76 Missense_Mutation p.S519C 0.35 tolerated(0.05) unknown(0) TCGA-JW-A5VL-01 12 53439202 53439202 C T TENC1 5'Flank 0.44 TCGA-JW-A5VL-01 12 53455934 53455934 C G TENC1 Intron 0.48 TCGA-JW-A5VL-01 12 53456001 53456001 C G TENC1 Missense_Mutation p.I1223M 0.48 deleterious(0) probably_damaging(0.986) TCGA-JW-A5VL-01 12 53554559 53554559 G C CSAD Silent p.L345L 0.31 TCGA-JW-A5VL-01 12 53607434 53607434 G C RARG Missense_Mutation p.F288L 0.47 tolerated(0.38) probably_damaging(0.935) TCGA-JW-A5VL-01 12 53608258 53608258 G A RARG Missense_Mutation p.S203L 0.41 tolerated(0.05) probably_damaging(0.951) TCGA-JW-A5VL-01 12 53663682 53663682 C T ESPL1 Missense_Mutation p.S319L 0.43 tolerated(0.21) benign(0.003) TCGA-JW-A5VL-01 12 53680360 53680360 C T ESPL1 Silent p.L1280L 0.34 TCGA-JW-A5VL-01 12 53702789 53702789 C T AAAS Silent p.Q317Q 0.38 TCGA-JW-A5VL-01 12 53823407 53823407 G T AMHR2 Nonsense_Mutation p.E380* 0.56 TCGA-JW-A5VL-01 12 53874513 53874513 C G MAP3K12 3'Flank 0.57 TCGA-JW-A5VL-01 12 54118528 54118528 C T CALCOCO1 Missense_Mutation p.E54K 0.34 tolerated(0.28) possibly_damaging(0.823) TCGA-JW-A5VL-01 12 54422601 54422601 C G HOXC6 Nonsense_Mutation p.S99* 0.46 TCGA-JW-A5VL-01 12 54967164 54967164 G C PDE1B Missense_Mutation p.D288H 0.43 deleterious(0) probably_damaging(0.975) TCGA-JW-A5VL-01 12 56230721 56230721 C T MMP19 3'UTR 0.44 TCGA-JW-A5VL-01 12 56230781 56230781 C T MMP19 3'UTR 0.50 TCGA-JW-A5VL-01 12 56230828 56230828 C G MMP19 Missense_Mutation p.E507Q 0.42 tolerated_low_confidence(0.14) unknown(0) TCGA-JW-A5VL-01 12 56233334 56233334 G C MMP19 Missense_Mutation p.R238G 0.36 deleterious(0.01) possibly_damaging(0.804) TCGA-JW-A5VL-01 12 56563372 56563372 C T SMARCC2 Missense_Mutation p.E855K 0.41 deleterious(0.02) benign(0.305) TCGA-JW-A5VL-01 12 56563391 56563391 C G SMARCC2 Missense_Mutation p.K848N 0.45 deleterious(0.03) benign(0.403) TCGA-JW-A5VL-01 12 56600398 56600398 C G RNF41 Missense_Mutation p.E263Q 0.41 tolerated(0.05) probably_damaging(0.993) TCGA-JW-A5VL-01 12 5685071 5685071 G C ANO2 Missense_Mutation p.F850L 0.20 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VL-01 12 56881923 56881923 C T GLS2 5'UTR 0.43 TCGA-JW-A5VL-01 12 57351166 57351166 C T RDH16 Silent p.L27L 0.37 TCGA-JW-A5VL-01 12 57432326 57432326 G A MYO1A Missense_Mutation p.R544W 0.44 deleterious(0) possibly_damaging(0.846) TCGA-JW-A5VL-01 12 57490477 57490477 C T STAT6 Missense_Mutation p.E808K 0.42 deleterious_low_confidence(0.01) benign(0.197) TCGA-JW-A5VL-01 12 57538819 57538819 C T LRP1 Silent p.F171F 0.36 TCGA-JW-A5VL-01 12 57871325 57871325 G T ARHGAP9 Missense_Mutation p.P225T 0.29 deleterious(0.02) benign(0.208) TCGA-JW-A5VL-01 12 57919472 57919472 G A MBD6 Missense_Mutation p.D241N 0.38 tolerated_low_confidence(0.13) unknown(0) TCGA-JW-A5VL-01 12 57919806 57919806 C G MBD6 Nonsense_Mutation p.S352* 0.52 TCGA-JW-A5VL-01 12 57919872 57919872 G A MBD6 Missense_Mutation p.R374Q 0.44 deleterious_low_confidence(0) unknown(0) TCGA-JW-A5VL-01 12 58007421 58007421 G A ARHGEF25 Intron 0.33 TCGA-JW-A5VL-01 12 58204681 58204681 C G AVIL Missense_Mutation p.R159P 0.30 deleterious(0.03) benign(0.34) TCGA-JW-A5VL-01 12 6128108 6128108 C T VWF Silent p.R1492R 0.43 TCGA-JW-A5VL-01 12 6230362 6230362 C G VWF Missense_Mutation p.Q66H 0.39 tolerated(0.45) probably_damaging(0.994) TCGA-JW-A5VL-01 12 64174868 64174868 G A TMEM5 Missense_Mutation p.R80K 0.37 tolerated(0.38) benign(0.097) TCGA-JW-A5VL-01 12 6457203 6457203 G A SCNN1A Missense_Mutation p.H675Y 0.47 tolerated(0.68) benign(0.422) TCGA-JW-A5VL-01 12 65130862 65130862 C G GNS Missense_Mutation p.K340N 0.41 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 12 65141672 65141672 G A GNS Silent p.P93P 0.41 TCGA-JW-A5VL-01 12 66236415 66236415 G C HMGA2 Intron 0.40 TCGA-JW-A5VL-01 12 6669685 6669685 C T NOP2 Silent p.L529L 0.28 TCGA-JW-A5VL-01 12 6679259 6679259 G T CHD4 3'UTR 0.29 TCGA-JW-A5VL-01 12 66839208 66839208 G A GRIP1 Missense_Mutation p.P427S 0.47 deleterious(0.05) benign(0.296) TCGA-JW-A5VL-01 12 6709028 6709028 C T CHD4 Missense_Mutation p.D465N 0.27 deleterious(0.01) probably_damaging(0.945) TCGA-JW-A5VL-01 12 6759810 6759810 C T ING4 3'UTR 0.42 TCGA-JW-A5VL-01 12 6803438 6803438 C G PIANP 3'UTR 0.32 TCGA-JW-A5VL-01 12 6926360 6926360 G A CD4 Silent p.L340L 0.43 TCGA-JW-A5VL-01 12 6927704 6927704 G A CD4 Missense_Mutation p.R425Q 0.33 tolerated(0.39) benign(0.153) TCGA-JW-A5VL-01 12 70049417 70049417 C A BEST3 Missense_Mutation p.R426L 0.43 tolerated(0.13) benign(0.001) TCGA-JW-A5VL-01 12 7023336 7023336 G A LRRC23 3'UTR 0.50 TCGA-JW-A5VL-01 12 70965766 70965766 C G PTPRB Missense_Mutation p.V982L 0.34 deleterious(0.05) possibly_damaging(0.781) TCGA-JW-A5VL-01 12 72667020 72667020 C G TRHDE Silent p.L154L 0.38 TCGA-JW-A5VL-01 12 75678767 75678767 C G CAPS2 Missense_Mutation p.E516Q 0.34 deleterious(0) probably_damaging(0.967) TCGA-JW-A5VL-01 12 77244971 77244971 G C ZDHHC17 3'UTR 0.46 TCGA-JW-A5VL-01 12 77421816 77421816 C G E2F7 Missense_Mutation p.E663Q 0.45 tolerated(0.38) benign(0.075) TCGA-JW-A5VL-01 12 7802149 7802149 C T APOBEC1 Nonsense_Mutation p.W235* 0.32 TCGA-JW-A5VL-01 12 78513722 78513722 G A NAV3 Missense_Mutation p.R1249Q 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-JW-A5VL-01 12 81503391 81503391 G C ACSS3 Missense_Mutation p.E122Q 0.34 tolerated(0.07) possibly_damaging(0.876) TCGA-JW-A5VL-01 12 81762965 81762965 C T PPFIA2 Silent p.E425E 0.35 TCGA-JW-A5VL-01 12 8289436 8289436 C G CLEC4A Nonsense_Mutation p.S168* 0.46 TCGA-JW-A5VL-01 12 8543454 8543454 G A LINC00937 RNA 0.53 TCGA-JW-A5VL-01 12 8798682 8798682 G C MFAP5 3'UTR 0.26 TCGA-JW-A5VL-01 12 88482878 88482878 C G CEP290 Missense_Mutation p.E1320D 0.55 probably_damaging(0.998) TCGA-JW-A5VL-01 12 89982813 89982813 C T ATP2B1 3'UTR 0.38 TCGA-JW-A5VL-01 12 96300167 96300167 C G CCDC38 Missense_Mutation p.E123Q 0.39 tolerated(0.53) possibly_damaging(0.823) TCGA-JW-A5VL-01 12 96356187 96356187 G A AMDHD1 Missense_Mutation p.E290K 0.42 tolerated(0.26) benign(0.042) TCGA-JW-A5VL-01 12 97147670 97147670 C G C12orf55 Missense_Mutation p.Q2612E 0.30 tolerated(0.11) benign(0.001) TCGA-JW-A5VL-01 12 9905895 9905895 G A CD69 3'UTR 0.26 TCGA-JW-A5VL-01 12 99120964 99120964 C G APAF1 Nonsense_Mutation p.S1157* 0.34 TCGA-JW-A5VL-01 13 108862428 108862428 G A LIG4 Missense_Mutation p.P397S 0.72 tolerated(0.2) benign(0.009) TCGA-JW-A5VL-01 13 111109743 111109743 C T COL4A2 Missense_Mutation p.P465S 0.45 possibly_damaging(0.573) TCGA-JW-A5VL-01 13 111522044 111522044 C T LINC00346 Missense_Mutation p.D32N 0.43 possibly_damaging(0.737) TCGA-JW-A5VL-01 13 113730449 113730449 C A MCF2L Missense_Mutation p.S493Y 0.26 tolerated(0.74) benign(0.272) TCGA-JW-A5VL-01 13 113743961 113743961 G A MCF2L Missense_Mutation p.E958K 0.42 tolerated(0.07) possibly_damaging(0.769) TCGA-JW-A5VL-01 13 25442795 25442795 C G RNF17 Missense_Mutation p.L1407V 0.38 deleterious(0) possibly_damaging(0.899) TCGA-JW-A5VL-01 13 28886206 28886206 C G FLT1 Missense_Mutation p.R1139T 0.37 tolerated(0.11) benign(0.005) TCGA-JW-A5VL-01 13 28901605 28901605 G C FLT1 Silent p.L930L 0.40 TCGA-JW-A5VL-01 13 29600683 29600683 G C MTUS2 Missense_Mutation p.E626D 0.46 tolerated(0.42) possibly_damaging(0.841) TCGA-JW-A5VL-01 13 31232866 31232866 G C USPL1 Missense_Mutation p.Q884H 0.41 deleterious(0.04) probably_damaging(0.989) TCGA-JW-A5VL-01 13 32526817 32526817 C G EEF1DP3 RNA 0.38 TCGA-JW-A5VL-01 13 39262212 39262212 G A FREM2 Missense_Mutation p.R244K 0.40 tolerated(0.93) benign(0.006) TCGA-JW-A5VL-01 13 42044802 42044802 G C RGCC 3'UTR 0.50 TCGA-JW-A5VL-01 13 42763169 42763169 C T DGKH Intron 0.36 TCGA-JW-A5VL-01 13 42877194 42877194 C G AKAP11 Missense_Mutation p.Q1438E 0.31 tolerated(0.16) possibly_damaging(0.46) TCGA-JW-A5VL-01 13 44734786 44734786 C G SMIM2 Missense_Mutation p.R69T 0.45 deleterious_low_confidence(0) benign(0.007) TCGA-JW-A5VL-01 13 45971465 45971465 C T SLC25A30 Silent p.K254K 0.38 TCGA-JW-A5VL-01 13 46531324 46531324 C G ZC3H13 3'Flank 0.40 TCGA-JW-A5VL-01 13 47255939 47255939 G A LRCH1 Missense_Mutation p.E215K 0.43 deleterious(0) benign(0.366) TCGA-JW-A5VL-01 13 49281162 49281162 C T CYSLTR2 Missense_Mutation p.S70F 0.41 deleterious(0.01) possibly_damaging(0.83) TCGA-JW-A5VL-01 13 50275932 50275932 G A KPNA3 3'UTR 0.42 TCGA-JW-A5VL-01 13 51826091 51826091 G C FAM124A Missense_Mutation p.R232S 0.44 deleterious(0.02) probably_damaging(0.987) TCGA-JW-A5VL-01 13 52548826 52548826 G C ATP7B Nonsense_Mutation p.S177* 0.45 TCGA-JW-A5VL-01 13 58208549 58208549 C G PCDH17 Silent p.L623L 0.38 TCGA-JW-A5VL-01 13 61986539 61986539 C T PCDH20 Missense_Mutation p.E565K 0.30 deleterious(0) benign(0.079) TCGA-JW-A5VL-01 13 73651442 73651442 G A KLF5 3'UTR 0.50 TCGA-JW-A5VL-01 13 77640190 77640190 C T MYCBP2 Missense_Mutation p.M4125I 0.40 possibly_damaging(0.655) TCGA-JW-A5VL-01 13 95095789 95095789 G A DCT Missense_Mutation p.R461W 0.34 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 13 96239958 96239958 C T DZIP1 Missense_Mutation p.E685K 0.41 deleterious(0) possibly_damaging(0.713) TCGA-JW-A5VL-01 13 98662238 98662238 C T IPO5 Missense_Mutation p.S653L 0.37 deleterious(0) possibly_damaging(0.691) TCGA-JW-A5VL-01 13 99037958 99037958 G C FARP1 Missense_Mutation p.E217Q 0.41 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VL-01 13 99105067 99105067 G A STK24 3'UTR 0.41 TCGA-JW-A5VL-01 14 100402637 100402637 C T EML1 Silent p.L706L 0.42 TCGA-JW-A5VL-01 14 100402642 100402642 C G EML1 Nonsense_Mutation p.S708* 0.41 TCGA-JW-A5VL-01 14 101012896 101012896 C T BEGAIN Missense_Mutation p.E40K 0.49 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VL-01 14 101200864 101200864 C G DLK1 Silent p.G261G 0.47 TCGA-JW-A5VL-01 14 101447404 101447404 G A SNORD114-20 RNA 0.40 TCGA-JW-A5VL-01 14 101528409 101528409 G A MIR377 RNA 0.41 TCGA-JW-A5VL-01 14 102510323 102510323 G A DYNC1H1 Missense_Mutation p.E4209K 0.36 probably_damaging(0.911) TCGA-JW-A5VL-01 14 103336564 103336564 C T TRAF3 Missense_Mutation p.S9F 0.30 deleterious_low_confidence(0.02) benign(0.158) TCGA-JW-A5VL-01 14 103389018 103389018 G A AMN 5'UTR 0.46 TCGA-JW-A5VL-01 14 103470347 103470347 C T CDC42BPB Missense_Mutation p.R122Q 0.33 tolerated(0.11) probably_damaging(0.946) TCGA-JW-A5VL-01 14 104026644 104026644 C T BAG5 Missense_Mutation p.M327I 0.41 tolerated_low_confidence(0.12) benign(0.073) TCGA-JW-A5VL-01 14 105179173 105179173 C G INF2 Missense_Mutation p.I873M 0.51 deleterious(0.04) unknown(0) TCGA-JW-A5VL-01 14 105268691 105268691 G A ZBTB42 Missense_Mutation p.R386Q 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-JW-A5VL-01 14 105413636 105413636 C G AHNAK2 Missense_Mutation p.E2718Q 0.44 possibly_damaging(0.87) TCGA-JW-A5VL-01 14 105963729 105963729 G A C14orf80 Silent p.L240L 0.38 TCGA-JW-A5VL-01 14 106173506 106173506 C T IGHA1 Silent p.%3D 0.22 TCGA-JW-A5VL-01 14 106173759 106173759 C T IGHA1 Missense_Mutation p.E270K 0.14 tolerated(0.1) benign(0.373) TCGA-JW-A5VL-01 14 20404690 20404690 C T OR4K1 Silent p.L289L 0.41 TCGA-JW-A5VL-01 14 20944864 20944864 G A PNP 3'UTR 0.40 TCGA-JW-A5VL-01 14 20978826 20978826 G A RNASE10 Missense_Mutation p.E66K 0.35 tolerated(0.06) possibly_damaging(0.725) TCGA-JW-A5VL-01 14 21269646 21269646 G C RNASE1 3'UTR 0.36 TCGA-JW-A5VL-01 14 21561008 21561008 C G ZNF219 Missense_Mutation p.E150Q 0.45 tolerated(0.17) probably_damaging(0.954) TCGA-JW-A5VL-01 14 21679390 21679390 C T HNRNPC Missense_Mutation p.D305N 0.32 deleterious_low_confidence(0.03) probably_damaging(0.98) TCGA-JW-A5VL-01 14 21756215 21756215 C G RPGRIP1 Nonsense_Mutation p.S27* 0.54 TCGA-JW-A5VL-01 14 21771605 21771605 G A RPGRIP1 Missense_Mutation p.E235K 0.41 deleterious(0.04) benign(0.037) TCGA-JW-A5VL-01 14 21780094 21780094 G A RPGRIP1 Missense_Mutation p.E348K 0.41 deleterious(0.01) possibly_damaging(0.873) TCGA-JW-A5VL-01 14 21882483 21882483 G C CHD8 Missense_Mutation p.Q707E 0.38 deleterious(0) probably_damaging(0.93) TCGA-JW-A5VL-01 14 21929394 21929394 C T RAB2B Silent p.R204R 0.44 TCGA-JW-A5VL-01 14 22363116 22363116 G C TRAV8-4 Missense_Mutation p.E83Q 0.43 tolerated(0.08) benign(0.129) TCGA-JW-A5VL-01 14 22933229 22933229 C A TRDC Missense_Mutation p.S127Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 14 23568552 23568552 G C C14orf119 3'UTR 0.39 TCGA-JW-A5VL-01 14 23884898 23884898 C T MYH7 Silent p.R1699R 0.35 TCGA-JW-A5VL-01 14 23995850 23995850 G C ZFHX2 Missense_Mutation p.L1101V 0.32 benign(0.278) TCGA-JW-A5VL-01 14 24030665 24030665 G A AP1G2 Intron 0.36 TCGA-JW-A5VL-01 14 24403723 24403723 G A DHRS4-AS1 5'Flank 0.45 TCGA-JW-A5VL-01 14 24526137 24526137 C T LRRC16B Silent p.L322L 0.39 TCGA-JW-A5VL-01 14 24526149 24526149 C T LRRC16B Silent p.F326F 0.38 TCGA-JW-A5VL-01 14 24635117 24635117 C T IRF9 Silent p.F351F 0.46 TCGA-JW-A5VL-01 14 24650950 24650950 C G IPO4 Missense_Mutation p.L969F 0.08 deleterious(0.01) benign(0.288) TCGA-JW-A5VL-01 14 24663944 24663944 C G TM9SF1 Missense_Mutation p.E94D 0.40 tolerated(0.57) benign(0.005) TCGA-JW-A5VL-01 14 24807137 24807137 C T RIPK3 Silent p.L258L 0.32 TCGA-JW-A5VL-01 14 24842959 24842959 G A NFATC4 Missense_Mutation p.E603K 0.26 deleterious(0) possibly_damaging(0.652) TCGA-JW-A5VL-01 14 24883998 24883998 G A NYNRIN Missense_Mutation p.E1015K 0.42 tolerated_low_confidence(0.05) benign(0.014) TCGA-JW-A5VL-01 14 24907168 24907168 C G KHNYN 3'UTR 0.30 TCGA-JW-A5VL-01 14 26949239 26949239 C G NOVA1 Missense_Mutation p.E131Q 0.46 tolerated(0.06) unknown(0) TCGA-JW-A5VL-01 14 31204835 31204835 G C SCFD1 3'UTR 0.53 TCGA-JW-A5VL-01 14 31611083 31611083 C T HECTD1 Missense_Mutation p.E952K 0.33 tolerated(0.41) benign(0.005) TCGA-JW-A5VL-01 14 31641296 31641296 G C HECTD1 Missense_Mutation p.Q397E 0.38 deleterious(0) probably_damaging(0.965) TCGA-JW-A5VL-01 14 32315700 32315700 G C NUBPL Missense_Mutation p.M239I 0.50 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 14 35182963 35182963 C T CFL2 5'UTR 0.58 TCGA-JW-A5VL-01 14 36159158 36159158 G A RALGAPA1 Missense_Mutation p.S773L 0.47 tolerated(0.11) probably_damaging(0.995) TCGA-JW-A5VL-01 14 36988461 36988461 G A NKX2-1 Silent p.L64L 0.27 TCGA-JW-A5VL-01 14 45543251 45543251 G A FAM179B 3'UTR 0.42 TCGA-JW-A5VL-01 14 50100096 50100096 G A DNAAF2 Missense_Mutation p.S591L 0.32 tolerated(0.22) benign(0.004) TCGA-JW-A5VL-01 14 50312863 50312863 C G NEMF Missense_Mutation p.D118H 0.41 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 14 50626635 50626635 C T SOS2 Missense_Mutation p.E456K 0.36 deleterious(0) probably_damaging(0.967) TCGA-JW-A5VL-01 14 50809653 50809653 C T CDKL1 Intron 0.47 TCGA-JW-A5VL-01 14 50845055 50845055 G A CDKL1 Intron 0.33 TCGA-JW-A5VL-01 14 50895433 50895433 G C MAP4K5 Nonsense_Mutation p.S758* 0.52 TCGA-JW-A5VL-01 14 50952896 50952896 C G MAP4K5 Missense_Mutation p.L61F 0.54 deleterious(0.01) benign(0.246) TCGA-JW-A5VL-01 14 51477205 51477205 C G TRIM9 Missense_Mutation p.R350P 0.46 deleterious(0.03) possibly_damaging(0.663) TCGA-JW-A5VL-01 14 52781935 52781935 C T PTGER2 Silent p.I223I 0.34 TCGA-JW-A5VL-01 14 55510564 55510564 G C SOCS4 Missense_Mutation p.D269H 0.48 deleterious(0.01) probably_damaging(0.956) TCGA-JW-A5VL-01 14 56119797 56119797 G C KTN1 Missense_Mutation p.L919F 0.47 tolerated(0.41) benign(0.011) TCGA-JW-A5VL-01 14 57960507 57960507 C G C14orf105 5'UTR 0.25 TCGA-JW-A5VL-01 14 58875635 58875635 G A TIMM9 3'UTR 0.38 TCGA-JW-A5VL-01 14 59113114 59113114 C G DACT1 Silent p.L591L 0.30 TCGA-JW-A5VL-01 14 59806896 59806896 G C DAAM1 Silent p.S701S 0.23 TCGA-JW-A5VL-01 14 60581945 60581945 C G PCNXL4 Missense_Mutation p.H141D 0.52 deleterious(0.02) benign(0.14) TCGA-JW-A5VL-01 14 61190355 61190355 C G SIX4 Missense_Mutation p.E146D 0.40 tolerated(0.07) probably_damaging(0.933) TCGA-JW-A5VL-01 14 62162552 62162552 G C HIF1A 5'Flank 0.40 TCGA-JW-A5VL-01 14 62536415 62536415 G C SYT16 Missense_Mutation p.Q206H 0.45 tolerated(0.14) benign(0.41) TCGA-JW-A5VL-01 14 65008969 65008969 C T HSPA2 Missense_Mutation p.P468S 0.59 deleterious_low_confidence(0.02) possibly_damaging(0.765) TCGA-JW-A5VL-01 14 65210858 65210858 G C PLEKHG3 3'UTR 0.59 TCGA-JW-A5VL-01 14 65210909 65210909 G C PLEKHG3 3'UTR 0.47 TCGA-JW-A5VL-01 14 66974939 66974939 C G GPHN 5'UTR 0.39 TCGA-JW-A5VL-01 14 68066806 68066806 G A PIGH Missense_Mutation p.R39C 0.43 tolerated(0.06) benign(0.004) TCGA-JW-A5VL-01 14 69262361 69262361 C T ZFP36L1 5'Flank 0.46 TCGA-JW-A5VL-01 14 69521200 69521200 C G DCAF5 Missense_Mutation p.E735Q 0.48 tolerated_low_confidence(0.15) possibly_damaging(0.556) TCGA-JW-A5VL-01 14 70171394 70171394 C T KIAA0247 Silent p.L131L 0.44 TCGA-JW-A5VL-01 14 70926378 70926378 C G ADAM21 Nonsense_Mutation p.S721* 0.35 TCGA-JW-A5VL-01 14 71051553 71051553 C T MED6 Missense_Mutation p.E240K 0.40 deleterious(0.01) benign(0.023) TCGA-JW-A5VL-01 14 72054767 72054767 G A SIPA1L1 Missense_Mutation p.E60K 0.45 tolerated(0.1) benign(0.237) TCGA-JW-A5VL-01 14 73441663 73441663 C T ZFYVE1 Missense_Mutation p.C604Y 0.33 deleterious(0) probably_damaging(0.986) TCGA-JW-A5VL-01 14 73957911 73957911 G C HEATR4 Intron 0.36 TCGA-JW-A5VL-01 14 73987662 73987662 C T HEATR4 Silent p.T321T 0.43 TCGA-JW-A5VL-01 14 74185770 74185770 G A ELMSAN1 3'UTR 0.57 TCGA-JW-A5VL-01 14 74196685 74196685 C G ELMSAN1 Missense_Mutation p.E585Q 0.43 deleterious(0.04) benign(0.312) TCGA-JW-A5VL-01 14 75277119 75277119 G A YLPM1 Missense_Mutation p.D1742N 0.33 probably_damaging(0.994) TCGA-JW-A5VL-01 14 77494361 77494361 C G IRF2BPL 5'UTR 0.57 TCGA-JW-A5VL-01 14 77797610 77797610 G A GSTZ1 3'UTR 0.62 TCGA-JW-A5VL-01 14 77929015 77929015 G A AHSA1 Missense_Mutation p.D129N 0.43 tolerated(0.24) benign(0.046) TCGA-JW-A5VL-01 14 78365500 78365500 G A ADCK1 Missense_Mutation p.D214N 0.39 deleterious(0) possibly_damaging(0.628) TCGA-JW-A5VL-01 14 78365503 78365503 G A ADCK1 Missense_Mutation p.E215K 0.39 deleterious(0) probably_damaging(0.99) TCGA-JW-A5VL-01 14 88477740 88477740 C G GPR65 Silent p.L183L 0.32 TCGA-JW-A5VL-01 14 89016638 89016638 C G PTPN21 Missense_Mutation p.E42Q 0.41 deleterious(0) possibly_damaging(0.639) TCGA-JW-A5VL-01 14 92278671 92278671 G A TC2N Silent p.L96L 0.46 TCGA-JW-A5VL-01 14 92472348 92472348 G A TRIP11 Missense_Mutation p.L658F 0.41 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 14 93653215 93653215 C T TMEM251 3'UTR 0.38 TCGA-JW-A5VL-01 14 94160720 94160720 G A UNC79 Missense_Mutation p.E2366K 0.42 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VL-01 14 94405904 94405904 C T ASB2 Silent p.L389L 0.44 TCGA-JW-A5VL-01 14 95999781 95999781 G A GLRX5 5'Flank 0.62 TCGA-JW-A5VL-01 15 100594105 100594105 C G ADAMTS17 Missense_Mutation p.L764F 0.28 tolerated(0.07) probably_damaging(0.98) TCGA-JW-A5VL-01 15 101042036 101042036 C G CERS3 Missense_Mutation p.E7Q 0.27 tolerated(0.13) benign(0.221) TCGA-JW-A5VL-01 15 101455008 101455008 C T ALDH1A3 3'UTR 0.41 TCGA-JW-A5VL-01 15 101835311 101835311 C T SNRPA1 Missense_Mutation p.D25N 0.32 tolerated(0.09) possibly_damaging(0.812) TCGA-JW-A5VL-01 15 101845211 101845211 C T PCSK6 3'UTR 0.20 TCGA-JW-A5VL-01 15 102194910 102194910 C G TARSL2 Missense_Mutation p.D762H 0.30 deleterious(0.02) benign(0.024) TCGA-JW-A5VL-01 15 102359288 102359288 G A OR4F15 Missense_Mutation p.R300K 0.27 tolerated_low_confidence(0.21) benign(0.006) TCGA-JW-A5VL-01 15 22928439 22928439 G C CYFIP1 Missense_Mutation p.E106Q 0.38 tolerated(0.07) benign(0.142) TCGA-JW-A5VL-01 15 22997803 22997803 G A CYFIP1 Missense_Mutation p.E1017K 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-JW-A5VL-01 15 27772576 27772576 C G GABRG3 Intron 0.37 TCGA-JW-A5VL-01 15 31221463 31221463 G C FAN1 Missense_Mutation p.E884Q 0.31 deleterious(0) probably_damaging(0.948) TCGA-JW-A5VL-01 15 31354877 31354877 G A TRPM1 Missense_Mutation p.L349F 0.47 deleterious(0.01) possibly_damaging(0.841) TCGA-JW-A5VL-01 15 32716848 32716848 G C U8 3'Flank 0.19 TCGA-JW-A5VL-01 15 32983947 32983947 G A SCG5 Missense_Mutation p.E176K 0.42 tolerated(0.46) benign(0.03) TCGA-JW-A5VL-01 15 34157581 34157581 G C RYR3 3'UTR 0.50 TCGA-JW-A5VL-01 15 34356038 34356038 C T CHRM5 Nonsense_Mutation p.Q374* 0.39 TCGA-JW-A5VL-01 15 34356124 34356124 C T CHRM5 Silent p.I402I 0.46 TCGA-JW-A5VL-01 15 34356619 34356619 C G CHRM5 3'UTR 0.32 TCGA-JW-A5VL-01 15 34356714 34356714 C G CHRM5 3'UTR 0.39 TCGA-JW-A5VL-01 15 34522111 34522111 C T EMC4 3'UTR 0.48 TCGA-JW-A5VL-01 15 34522116 34522116 C T EMC4 3'UTR 0.37 TCGA-JW-A5VL-01 15 34825220 34825220 C G GOLGA8B Intron 0.62 TCGA-JW-A5VL-01 15 35084672 35084672 G A ACTC1 Missense_Mutation p.R185W 0.28 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-JW-A5VL-01 15 35159783 35159783 G A AQR Nonsense_Mutation p.Q1266* 0.41 TCGA-JW-A5VL-01 15 39879667 39879667 G C THBS1 Missense_Mutation p.E414Q 0.35 tolerated(0.41) benign(0.189) TCGA-JW-A5VL-01 15 40382161 40382161 C G BMF 3'UTR 0.23 TCGA-JW-A5VL-01 15 40627604 40627604 C G C15orf52 Missense_Mutation p.E454Q 0.41 deleterious(0.01) benign(0.195) TCGA-JW-A5VL-01 15 40764143 40764143 G A CHST14 Missense_Mutation p.R244Q 0.35 deleterious(0.02) possibly_damaging(0.577) TCGA-JW-A5VL-01 15 40765294 40765294 G A CHST14 3'UTR 0.36 TCGA-JW-A5VL-01 15 41071455 41071455 C A DNAJC17 Missense_Mutation p.Q87H 0.29 deleterious(0.04) benign(0.021) TCGA-JW-A5VL-01 15 41071466 41071466 C G DNAJC17 Missense_Mutation p.E84Q 0.30 tolerated(0.49) benign(0.025) TCGA-JW-A5VL-01 15 41222245 41222245 C T DLL4 Silent p.F89F 0.52 TCGA-JW-A5VL-01 15 41272416 41272416 G A INO80 3'UTR 0.36 TCGA-JW-A5VL-01 15 41535869 41535869 C T CHP1 Silent p.S24S 0.50 TCGA-JW-A5VL-01 15 41535870 41535870 C T CHP1 Missense_Mutation p.H25Y 0.49 deleterious(0.04) benign(0.073) TCGA-JW-A5VL-01 15 41812658 41812658 G A RPAP1 Silent p.V1242V 0.31 TCGA-JW-A5VL-01 15 41988923 41988923 C T MGA Missense_Mutation p.S572L 0.46 tolerated(0.06) benign(0.005) TCGA-JW-A5VL-01 15 42143328 42143328 G T SPTBN5 Silent p.L3588L 0.39 TCGA-JW-A5VL-01 15 42632033 42632033 C T GANC Silent p.I670I 0.42 TCGA-JW-A5VL-01 15 43045109 43045109 C G TTBK2 Missense_Mutation p.E779Q 0.46 tolerated_low_confidence(0.08) benign(0.039) TCGA-JW-A5VL-01 15 43069344 43069344 G C TTBK2 Missense_Mutation p.Q432E 0.33 tolerated(0.28) benign(0.309) TCGA-JW-A5VL-01 15 43487093 43487093 G C CCNDBP1 3'UTR 0.48 TCGA-JW-A5VL-01 15 43533169 43533169 G C TGM5 Missense_Mutation p.I294M 0.36 deleterious(0) probably_damaging(0.968) TCGA-JW-A5VL-01 15 44086132 44086132 C G SERF2 Missense_Mutation p.Q159E 0.62 deleterious_low_confidence(0) benign(0.042) TCGA-JW-A5VL-01 15 44092743 44092743 C T HYPK 5'UTR 0.58 TCGA-JW-A5VL-01 15 44097317 44097317 G C MFAP1 Missense_Mutation p.S432C 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-JW-A5VL-01 15 45404065 45404065 G A DUOX2 Silent p.P138P 0.44 TCGA-JW-A5VL-01 15 45814223 45814223 C T SLC30A4 Silent p.V110V 0.24 TCGA-JW-A5VL-01 15 49090193 49090193 G A CEP152 Missense_Mutation p.S48F 0.39 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 15 50550607 50550607 G A HDC Silent p.F104F 0.31 TCGA-JW-A5VL-01 15 50833424 50833424 G C USP50 Missense_Mutation p.S161C 0.43 deleterious(0) possibly_damaging(0.886) TCGA-JW-A5VL-01 15 51689762 51689762 C T GLDN Missense_Mutation p.R262W 0.35 deleterious(0.02) possibly_damaging(0.836) TCGA-JW-A5VL-01 15 52357838 52357838 G A MAPK6 3'UTR 0.45 TCGA-JW-A5VL-01 15 52472036 52472036 G T GNB5 Nonsense_Mutation p.S56* 0.38 TCGA-JW-A5VL-01 15 56387701 56387701 G A RFX7 Missense_Mutation p.S742L 0.45 deleterious_low_confidence(0.03) benign(0.002) TCGA-JW-A5VL-01 15 56996336 56996336 G A ZNF280D Missense_Mutation p.S53L 0.39 deleterious(0.02) benign(0.178) TCGA-JW-A5VL-01 15 57842697 57842697 G A CGNL1 3'UTR 0.49 TCGA-JW-A5VL-01 15 59553670 59553670 G C MYO1E Missense_Mutation p.F62L 0.44 deleterious(0.02) probably_damaging(0.996) TCGA-JW-A5VL-01 15 59910896 59910896 G C GCNT3 Silent p.V153V 0.36 TCGA-JW-A5VL-01 15 62212712 62212712 G C VPS13C Missense_Mutation p.F2399L 0.60 tolerated(1) probably_damaging(0.998) TCGA-JW-A5VL-01 15 63893570 63893570 G C FBXL22 Silent p.P143P 0.31 TCGA-JW-A5VL-01 15 63932560 63932560 G A HERC1 Nonsense_Mutation p.Q3898* 0.44 TCGA-JW-A5VL-01 15 63946435 63946435 G A HERC1 Silent p.L3391L 0.34 TCGA-JW-A5VL-01 15 63970083 63970083 G A HERC1 Missense_Mutation p.S2344F 0.36 probably_damaging(0.948) TCGA-JW-A5VL-01 15 63970165 63970165 G C HERC1 Missense_Mutation p.L2317V 0.46 probably_damaging(0.996) TCGA-JW-A5VL-01 15 64973556 64973556 C G ZNF609 Nonsense_Mutation p.S1404* 0.30 TCGA-JW-A5VL-01 15 65157665 65157665 G C PLEKHO2 Missense_Mutation p.E351Q 0.54 tolerated(0.08) benign(0.393) TCGA-JW-A5VL-01 15 65490682 65490682 C G CILP Missense_Mutation p.E648Q 0.39 deleterious(0.02) possibly_damaging(0.617) TCGA-JW-A5VL-01 15 65994801 65994801 G C DENND4A Missense_Mutation p.Q758E 0.44 tolerated(0.33) possibly_damaging(0.621) TCGA-JW-A5VL-01 15 67486140 67486140 C T SMAD3 3'UTR 0.54 TCGA-JW-A5VL-01 15 69563911 69563911 G A GLCE 3'UTR 0.19 TCGA-JW-A5VL-01 15 70960244 70960244 C G UACA Missense_Mutation p.E927Q 0.62 deleterious(0.03) benign(0.046) TCGA-JW-A5VL-01 15 70961397 70961397 C T UACA Silent p.L542L 0.38 TCGA-JW-A5VL-01 15 72313282 72313282 C G MYO9A Missense_Mutation p.E359Q 0.52 tolerated(0.17) benign(0.039) TCGA-JW-A5VL-01 15 74328176 74328176 G A PML Intron 0.30 TCGA-JW-A5VL-01 15 74888066 74888066 C T ARID3B Missense_Mutation p.S545L 0.33 deleterious(0.04) probably_damaging(0.997) TCGA-JW-A5VL-01 15 74890150 74890150 G A ARID3B 3'UTR 0.48 TCGA-JW-A5VL-01 15 75137811 75137811 C G SCAMP2 Intron 0.40 TCGA-JW-A5VL-01 15 75212768 75212768 C T COX5A 3'UTR 0.32 TCGA-JW-A5VL-01 15 75249649 75249649 C T RPP25 5'UTR 0.29 TCGA-JW-A5VL-01 15 75641330 75641330 G A NEIL1 Silent p.E28E 0.43 TCGA-JW-A5VL-01 15 75982032 75982032 C T CSPG4 Silent p.L458L 0.37 TCGA-JW-A5VL-01 15 76054601 76054601 C T MIR4313 RNA 0.36 TCGA-JW-A5VL-01 15 78398016 78398016 C G CIB2 Intron 0.61 TCGA-JW-A5VL-01 15 78573716 78573716 G A DNAJA4 3'UTR 0.18 TCGA-JW-A5VL-01 15 78790910 78790910 C G IREB2 3'UTR 0.34 TCGA-JW-A5VL-01 15 79187165 79187165 G A MORF4L1 Missense_Mutation p.R308Q 0.41 tolerated(0.06) benign(0.061) TCGA-JW-A5VL-01 15 79588576 79588576 C A ANKRD34C 3'UTR 0.33 TCGA-JW-A5VL-01 15 79764604 79764604 C T KIAA1024 3'UTR 0.64 TCGA-JW-A5VL-01 15 81295598 81295598 C T MESDC1 Missense_Mutation p.S329L 0.67 tolerated(0.11) possibly_damaging(0.682) TCGA-JW-A5VL-01 15 81605714 81605714 G C STARD5 Missense_Mutation p.F175L 0.23 tolerated(0.08) possibly_damaging(0.682) TCGA-JW-A5VL-01 15 81611704 81611704 C T STARD5 Missense_Mutation p.E126K 0.24 deleterious(0.02) possibly_damaging(0.462) TCGA-JW-A5VL-01 15 82551473 82551473 G A EFTUD1 Missense_Mutation p.L39F 0.39 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 15 82934805 82934805 C T GOLGA6L18 Missense_Mutation p.E259K 0.05 tolerated(0.36) unknown(0) TCGA-JW-A5VL-01 15 83240306 83240306 G A CPEB1 Intron 0.20 TCGA-JW-A5VL-01 15 83455623 83455623 C T FSD2 Missense_Mutation p.E174K 0.23 tolerated(0.07) possibly_damaging(0.786) TCGA-JW-A5VL-01 15 83791585 83791585 C G TM6SF1 Missense_Mutation p.F186L 0.19 tolerated(0.46) benign(0.01) TCGA-JW-A5VL-01 15 83925218 83925218 G C BNC1 3'UTR 0.17 TCGA-JW-A5VL-01 15 84708173 84708173 G C ADAMTSL3 3'UTR 0.15 TCGA-JW-A5VL-01 15 85383373 85383373 G A ALPK3 Missense_Mutation p.G490E 0.23 deleterious(0.03) benign(0.055) TCGA-JW-A5VL-01 15 85401610 85401610 C G ALPK3 Missense_Mutation p.S1416C 0.20 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 15 86064769 86064769 G T AKAP13 Silent p.R48R 0.24 TCGA-JW-A5VL-01 15 86302651 86302651 G T KLHL25 3'UTR 0.23 TCGA-JW-A5VL-01 15 86313726 86313726 G A KLHL25 Intron 0.20 TCGA-JW-A5VL-01 15 88799372 88799372 G C NTRK3 Missense_Mutation p.L5V 0.27 deleterious_low_confidence(0.05) benign(0.114) TCGA-JW-A5VL-01 15 89010588 89010588 C T MRPL46 Silent p.R7R 0.13 TCGA-JW-A5VL-01 15 89728683 89728683 C G ABHD2 Missense_Mutation p.Q251E 0.21 deleterious(0.04) benign(0.016) TCGA-JW-A5VL-01 15 89816662 89816662 C T FANCI Missense_Mutation p.L313F 0.18 tolerated(0.16) benign(0.11) TCGA-JW-A5VL-01 15 89825010 89825010 C G FANCI Silent p.V509V 0.13 TCGA-JW-A5VL-01 15 90127592 90127592 C T TICRR Missense_Mutation p.P337L 0.20 deleterious(0.05) possibly_damaging(0.477) TCGA-JW-A5VL-01 15 90190196 90190196 C T KIF7 Silent p.L551L 0.49 TCGA-JW-A5VL-01 15 90192361 90192361 G C KIF7 Nonsense_Mutation p.S256* 0.21 TCGA-JW-A5VL-01 15 90286520 90286520 C T WDR93 Intron 0.22 TCGA-JW-A5VL-01 15 90286667 90286667 G A WDR93 3'UTR 0.19 TCGA-JW-A5VL-01 15 90623756 90623756 C G ZNF710 3'UTR 0.19 TCGA-JW-A5VL-01 15 91185807 91185807 G A CRTC3 3'UTR 0.31 TCGA-JW-A5VL-01 15 91295145 91295146 - G BLM Frame_Shift_Ins p.S310Cfs*11 0.21 TCGA-JW-A5VL-01 15 91295146 91295146 C G BLM Missense_Mutation p.S310C 0.24 tolerated(0.09) probably_damaging(0.999) TCGA-JW-A5VL-01 15 91419569 91419569 C T FURIN Nonsense_Mutation p.Q88* 0.33 TCGA-JW-A5VL-01 15 91478422 91478422 C T UNC45A 5'Flank 0.36 TCGA-JW-A5VL-01 15 91496406 91496406 C T UNC45A Nonsense_Mutation p.Q815* 0.32 TCGA-JW-A5VL-01 15 91513644 91513644 G A PRC1 Missense_Mutation p.S521F 0.21 deleterious(0) probably_damaging(0.982) TCGA-JW-A5VL-01 15 93570250 93570250 C T CHD2 3'UTR 0.30 TCGA-JW-A5VL-01 15 93587868 93587868 C G RGMA 3'Flank 0.26 TCGA-JW-A5VL-01 15 94899419 94899419 C G MCTP2 Silent p.L353L 0.15 TCGA-JW-A5VL-01 15 94945864 94945864 C G MCTP2 Intron 0.29 TCGA-JW-A5VL-01 15 98417423 98417423 G C LINC00923 Silent p.L31L 0.22 TCGA-JW-A5VL-01 15 99023833 99023833 C T FAM169B Missense_Mutation p.M60I 0.29 tolerated(0.4) benign(0.017) TCGA-JW-A5VL-01 15 99434640 99434640 G C IGF1R Missense_Mutation p.D243H 0.20 tolerated(0.16) benign(0.013) TCGA-JW-A5VL-01 15 99434645 99434645 C A IGF1R Missense_Mutation p.N244K 0.20 tolerated(0.06) benign(0.013) TCGA-JW-A5VL-01 16 10855381 10855381 G A NUBP1 Intron 0.26 TCGA-JW-A5VL-01 16 11097066 11097066 G A CLEC16A Missense_Mutation p.E403K 0.27 tolerated(0.19) benign(0.015) TCGA-JW-A5VL-01 16 11362926 11362926 G C TNP2 Nonsense_Mutation p.S65* 0.32 TCGA-JW-A5VL-01 16 11554965 11554965 C G CTD-3088G3.8 Missense_Mutation p.E1107D 0.27 deleterious(0.05) unknown(0) TCGA-JW-A5VL-01 16 11770783 11770783 C G SNN 3'UTR 0.23 TCGA-JW-A5VL-01 16 11771060 11771060 G T SNN 3'UTR 0.29 TCGA-JW-A5VL-01 16 11913897 11913897 G C BCAR4 RNA 0.28 TCGA-JW-A5VL-01 16 11984953 11984953 C G GSPT1 Missense_Mutation p.E248Q 0.24 deleterious(0.02) benign(0.444) TCGA-JW-A5VL-01 16 1270951 1270951 C G CACNA1H Nonsense_Mutation p.S2340* 0.40 TCGA-JW-A5VL-01 16 1392548 1392548 C T BAIAP3 Silent p.V361V 0.29 TCGA-JW-A5VL-01 16 1415722 1415722 G C UNKL 3'UTR 0.15 TCGA-JW-A5VL-01 16 1415817 1415817 G C UNKL 3'UTR 0.36 TCGA-JW-A5VL-01 16 1416192 1416192 G A UNKL 3'UTR 0.22 TCGA-JW-A5VL-01 16 14761513 14761513 G C BFAR Missense_Mutation p.W394C 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VL-01 16 1502884 1502884 G A CLCN7 Missense_Mutation p.R409W 0.29 tolerated(0.14) benign(0.052) TCGA-JW-A5VL-01 16 1568328 1568328 G C IFT140 Missense_Mutation p.I1357M 0.23 tolerated(0.52) benign(0.045) TCGA-JW-A5VL-01 16 15814867 15814867 C G MYH11 Missense_Mutation p.Q1547H 0.20 probably_damaging(0.914) TCGA-JW-A5VL-01 16 1614148 1614148 C G IFT140 Silent p.V639V 0.20 TCGA-JW-A5VL-01 16 1642482 1642482 G C IFT140 Silent p.L159L 0.22 TCGA-JW-A5VL-01 16 18584367 18584367 C T RP11-457I16.2 5'Flank 0.23 TCGA-JW-A5VL-01 16 1877400 1877400 C T FAHD1 Missense_Mutation p.S57L 0.34 deleterious(0.05) benign(0.021) TCGA-JW-A5VL-01 16 19020719 19020719 C G TMC7 Missense_Mutation p.S98C 0.44 deleterious(0.01) possibly_damaging(0.894) TCGA-JW-A5VL-01 16 19130299 19130299 C G ITPRIPL2 3'UTR 0.45 TCGA-JW-A5VL-01 16 2012214 2012214 C T RPS2 Nonsense_Mutation p.W256* 0.28 TCGA-JW-A5VL-01 16 2027758 2027758 G C TBL3 Missense_Mutation p.E639Q 0.36 deleterious(0.03) benign(0.287) TCGA-JW-A5VL-01 16 2048029 2048029 G T ZNF598 3'UTR 0.29 TCGA-JW-A5VL-01 16 20975884 20975884 C T DNAH3 Missense_Mutation p.D3108N 0.47 deleterious(0.04) probably_damaging(0.914) TCGA-JW-A5VL-01 16 21053505 21053505 G A DNAH3 Silent p.V1494V 0.63 TCGA-JW-A5VL-01 16 2129076 2129076 G A TSC2 Missense_Mutation p.D1004N 0.31 tolerated(0.09) probably_damaging(0.954) TCGA-JW-A5VL-01 16 2129355 2129355 G A TSC2 Silent p.T1070T 0.24 TCGA-JW-A5VL-01 16 2161292 2161292 G A PKD1 Silent p.F1292F 0.33 TCGA-JW-A5VL-01 16 2201859 2201859 C G RAB26 Missense_Mutation p.L140V 0.34 deleterious(0.01) possibly_damaging(0.697) TCGA-JW-A5VL-01 16 2239141 2239141 G A CASKIN1 Silent p.L168L 0.23 TCGA-JW-A5VL-01 16 22448669 22448669 G A RRN3P3 RNA 0.34 TCGA-JW-A5VL-01 16 22558204 22558204 G C RP11-368J21.3 RNA 0.17 TCGA-JW-A5VL-01 16 22558354 22558354 G C RP11-368J21.3 RNA 0.18 TCGA-JW-A5VL-01 16 2293398 2293398 C T ECI1 Missense_Mutation p.D162N 0.24 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 16 23119422 23119422 C A USP31 Missense_Mutation p.R239L 0.41 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 16 24836987 24836987 G C TNRC6A 3'UTR 0.65 TCGA-JW-A5VL-01 16 2503298 2503298 C T CCNF Silent p.I525I 0.27 TCGA-JW-A5VL-01 16 2712361 2712361 G A ERVK13-1 RNA 0.25 TCGA-JW-A5VL-01 16 27226021 27226021 G A KDM8 Intron 0.38 TCGA-JW-A5VL-01 16 27457337 27457337 G C IL21R Missense_Mutation p.K265N 0.71 deleterious(0.02) probably_damaging(0.951) TCGA-JW-A5VL-01 16 28734509 28734509 G C EIF3C Missense_Mutation p.K267N 0.17 tolerated(0.18) benign(0.03) TCGA-JW-A5VL-01 16 2881978 2881978 G C ZG16B Missense_Mutation p.D149H 0.33 tolerated(0.11) possibly_damaging(0.543) TCGA-JW-A5VL-01 16 28847643 28847643 G A ATXN2L Intron 0.17 TCGA-JW-A5VL-01 16 29706186 29706186 C G QPRT Missense_Mutation p.S72C 0.42 deleterious(0) possibly_damaging(0.677) TCGA-JW-A5VL-01 16 29816249 29816249 G C KIF22 Missense_Mutation p.E598Q 0.15 tolerated(0.39) possibly_damaging(0.476) TCGA-JW-A5VL-01 16 29841880 29841880 G A MVP Missense_Mutation p.E4K 0.41 tolerated(0.15) benign(0.014) TCGA-JW-A5VL-01 16 29883600 29883600 G A SEZ6L2 Nonsense_Mutation p.Q871* 0.46 TCGA-JW-A5VL-01 16 30077075 30077075 C T ALDOA Intron 0.38 TCGA-JW-A5VL-01 16 30077131 30077131 C G ALDOA Intron 0.46 TCGA-JW-A5VL-01 16 30081343 30081343 G C ALDOA Missense_Mutation p.R385P 0.56 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 16 30081399 30081399 G A ALDOA Intron 0.47 TCGA-JW-A5VL-01 16 30128563 30128563 G C MAPK3 Missense_Mutation p.I273M 0.46 tolerated(0.11) possibly_damaging(0.792) TCGA-JW-A5VL-01 16 30346634 30346634 G A RP11-347C12.2 RNA 0.44 TCGA-JW-A5VL-01 16 3065630 3065630 C G CLDN6 Silent p.L131L 0.28 TCGA-JW-A5VL-01 16 30663238 30663238 C G PRR14 Missense_Mutation p.R49G 0.41 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-JW-A5VL-01 16 30777520 30777520 G C RNF40 Missense_Mutation p.E344Q 0.48 tolerated(0.07) probably_damaging(0.941) TCGA-JW-A5VL-01 16 30778082 30778082 G A RNF40 Silent p.Q438Q 0.36 TCGA-JW-A5VL-01 16 30778146 30778146 G A RNF40 Missense_Mutation p.E460K 0.43 deleterious(0) probably_damaging(0.983) TCGA-JW-A5VL-01 16 30779455 30779455 C G RNF40 Missense_Mutation p.S528C 0.31 deleterious(0.05) benign(0) TCGA-JW-A5VL-01 16 30793806 30793806 G A ZNF629 Nonsense_Mutation p.R615* 0.43 TCGA-JW-A5VL-01 16 3080597 3080597 C T CCDC64B Splice_Site p.X206_splice 0.30 TCGA-JW-A5VL-01 16 3081440 3081440 G C CCDC64B Intron 0.23 TCGA-JW-A5VL-01 16 30934103 30934103 C G FBXL19 5'Flank 0.34 TCGA-JW-A5VL-01 16 3115577 3115577 G C IL32 5'UTR 0.34 TCGA-JW-A5VL-01 16 3119507 3119507 C G IL32 3'UTR 0.14 TCGA-JW-A5VL-01 16 31235640 31235640 C T TRIM72 Missense_Mutation p.A333V 0.50 deleterious(0.01) possibly_damaging(0.69) TCGA-JW-A5VL-01 16 31371752 31371752 G A ITGAX Missense_Mutation p.D277N 0.33 deleterious(0.02) benign(0.074) TCGA-JW-A5VL-01 16 3140190 3140190 C G ZSCAN10 Missense_Mutation p.Q360H 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-JW-A5VL-01 16 31477187 31477187 G C ARMC5 Missense_Mutation p.Q627H 0.32 tolerated(0.06) probably_damaging(0.953) TCGA-JW-A5VL-01 16 3297155 3297155 G A MEFV Missense_Mutation p.S483L 0.26 tolerated(0.15) benign(0.138) TCGA-JW-A5VL-01 16 3586054 3586054 G C CLUAP1 Intron 0.25 TCGA-JW-A5VL-01 16 3639021 3639021 C T SLX4 Missense_Mutation p.E1540K 0.38 tolerated(0.23) benign(0.004) TCGA-JW-A5VL-01 16 4409516 4409516 C G CORO7 Missense_Mutation p.D739H 0.26 deleterious(0.01) benign(0.072) TCGA-JW-A5VL-01 16 4431256 4431256 C T VASN Silent p.L126L 0.34 TCGA-JW-A5VL-01 16 450725 450725 G C NME4 3'UTR 0.27 TCGA-JW-A5VL-01 16 4749070 4749070 C T ANKS3 Silent p.L464L 0.32 TCGA-JW-A5VL-01 16 4750748 4750748 G C ANKS3 Intron 0.28 TCGA-JW-A5VL-01 16 47621660 47621660 G T PHKB Nonsense_Mutation p.E286* 0.39 TCGA-JW-A5VL-01 16 4827818 4827818 C T SEPT12 Missense_Mutation p.D353N 0.39 tolerated_low_confidence(0.44) benign(0.004) TCGA-JW-A5VL-01 16 48278451 48278451 C G LONP2 Missense_Mutation p.S51W 0.45 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 16 4835864 4835864 C A SEPT12 Silent p.L106L 0.31 TCGA-JW-A5VL-01 16 48595284 48595284 C T N4BP1 Missense_Mutation p.D424N 0.30 tolerated(0.23) benign(0.003) TCGA-JW-A5VL-01 16 4882065 4882065 G C GLYR1 Missense_Mutation p.S151C 0.34 deleterious(0.01) benign(0.43) TCGA-JW-A5VL-01 16 5008425 5008425 C T SEC14L5 5'UTR 0.29 TCGA-JW-A5VL-01 16 50783889 50783889 G C CYLD Missense_Mutation p.E94Q 0.25 tolerated(0.18) possibly_damaging(0.828) TCGA-JW-A5VL-01 16 5125483 5125483 C A ALG1 Missense_Mutation p.S162Y 0.25 deleterious(0) probably_damaging(0.968) TCGA-JW-A5VL-01 16 53301906 53301906 G A CHD9 Missense_Mutation p.E1529K 0.46 probably_damaging(0.979) TCGA-JW-A5VL-01 16 53404808 53404808 C T RP11-44F14.1 RNA 0.46 TCGA-JW-A5VL-01 16 53526658 53526658 G C AKTIP Missense_Mutation p.P240A 0.23 tolerated(0.1) benign(0.007) TCGA-JW-A5VL-01 16 53528490 53528490 G A AKTIP Missense_Mutation p.H148Y 0.50 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 16 55584987 55584987 G C LPCAT2 Missense_Mutation p.L396F 0.34 deleterious(0.01) possibly_damaging(0.903) TCGA-JW-A5VL-01 16 56519523 56519523 G C BBS2 Missense_Mutation p.Q680E 0.51 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 16 56691957 56691957 C G MT1F 5'UTR 0.40 TCGA-JW-A5VL-01 16 56839461 56839461 G A NUP93 Missense_Mutation p.E136K 0.42 deleterious(0.01) benign(0.079) TCGA-JW-A5VL-01 16 57091982 57091982 C T NLRC5 Missense_Mutation p.S1251L 0.61 deleterious(0) possibly_damaging(0.493) TCGA-JW-A5VL-01 16 57111636 57111636 C T NLRC5 Missense_Mutation p.S1642L 0.44 deleterious(0) possibly_damaging(0.887) TCGA-JW-A5VL-01 16 57416043 57416043 G A CX3CL1 Missense_Mutation p.R98Q 0.50 tolerated(1) benign(0) TCGA-JW-A5VL-01 16 57609400 57609400 G A GPR114 Missense_Mutation p.E513K 0.59 tolerated(0.2) benign(0.063) TCGA-JW-A5VL-01 16 57806156 57806156 C G KIFC3 Silent p.V120V 0.35 TCGA-JW-A5VL-01 16 58080237 58080237 G C MMP15 3'UTR 0.33 TCGA-JW-A5VL-01 16 58550511 58550511 C G SETD6 Silent p.L202L 0.45 TCGA-JW-A5VL-01 16 624234 624234 C T PIGQ Nonsense_Mutation p.Q54* 0.31 TCGA-JW-A5VL-01 16 64984692 64984692 G C CDH11 Silent p.L624L 0.23 TCGA-JW-A5VL-01 16 66887443 66887443 C G CA7 3'UTR 0.52 TCGA-JW-A5VL-01 16 66921640 66921640 G A PDP2 3'UTR 0.45 TCGA-JW-A5VL-01 16 67207831 67207831 G C NOL3 5'Flank 0.46 TCGA-JW-A5VL-01 16 67663428 67663428 C T CTCF Missense_Mutation p.S610F 0.46 deleterious(0.03) benign(0.36) TCGA-JW-A5VL-01 16 67700140 67700140 C T ENKD1 Silent p.L38L 0.45 TCGA-JW-A5VL-01 16 67877766 67877766 C T THAP11 3'UTR 0.35 TCGA-JW-A5VL-01 16 67977544 67977544 G C SLC12A4 3'UTR 0.21 TCGA-JW-A5VL-01 16 68009858 68009858 G A DPEP3 Missense_Mutation p.P451L 0.40 deleterious(0.03) possibly_damaging(0.519) TCGA-JW-A5VL-01 16 68344279 68344279 C G SLC7A6OS Missense_Mutation p.E144Q 0.55 deleterious(0.03) probably_damaging(1) TCGA-JW-A5VL-01 16 684553 684553 G C C16orf13 Silent p.L197L 0.23 TCGA-JW-A5VL-01 16 69373702 69373702 G A NIP7 5'UTR 0.37 TCGA-JW-A5VL-01 16 69458597 69458597 C G CYB5B Nonsense_Mutation p.S4* 0.45 TCGA-JW-A5VL-01 16 69458700 69458700 G A CYB5B Silent p.L38L 0.47 TCGA-JW-A5VL-01 16 69733361 69733361 C T NFAT5 3'UTR 0.39 TCGA-JW-A5VL-01 16 70191242 70191242 G A PDPR 3'UTR 0.25 TCGA-JW-A5VL-01 16 70513187 70513187 C T FUK Silent p.L1012L 0.39 TCGA-JW-A5VL-01 16 71481924 71481924 C G ZNF23 3'UTR 0.41 TCGA-JW-A5VL-01 16 71610147 71610147 C G TAT Missense_Mutation p.A58P 0.37 tolerated(0.12) benign(0.299) TCGA-JW-A5VL-01 16 72051002 72051002 G A DHODH Missense_Mutation p.E172K 0.39 tolerated(0.68) benign(0.002) TCGA-JW-A5VL-01 16 74425650 74425650 C T NPIPB15 Missense_Mutation p.S335L 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-JW-A5VL-01 16 747106 747106 C G FBXL16 Missense_Mutation p.K100N 0.43 tolerated(0.07) benign(0.006) TCGA-JW-A5VL-01 16 75338926 75338926 C G CFDP1 Missense_Mutation p.E269Q 0.42 tolerated(0.15) possibly_damaging(0.525) TCGA-JW-A5VL-01 16 75445851 75445851 C T CFDP1 Splice_Site p.X135_splice 0.39 TCGA-JW-A5VL-01 16 780302 780302 C G NARFL 3'UTR 0.26 TCGA-JW-A5VL-01 16 81050974 81050974 G C CENPN Missense_Mutation p.Q87H 0.36 tolerated(0.05) benign(0.037) TCGA-JW-A5VL-01 16 81348827 81348827 G C GAN Missense_Mutation p.D37H 0.25 tolerated(0.06) benign(0.371) TCGA-JW-A5VL-01 16 814672 814672 C G MSLN Missense_Mutation p.S109C 0.24 tolerated(0.06) probably_damaging(0.962) TCGA-JW-A5VL-01 16 81973535 81973535 G C PLCG2 Missense_Mutation p.E1118Q 0.42 deleterious(0.03) benign(0.422) TCGA-JW-A5VL-01 16 82132082 82132082 G C HSD17B2 3'UTR 0.38 TCGA-JW-A5VL-01 16 82892020 82892020 G C CDH13 Missense_Mutation p.Q80H 0.43 deleterious(0.04) possibly_damaging(0.568) TCGA-JW-A5VL-01 16 83817034 83817034 C T CDH13 Silent p.F744F 0.65 TCGA-JW-A5VL-01 16 83817049 83817049 C T CDH13 Silent p.V749V 0.74 TCGA-JW-A5VL-01 16 843016 843016 C T CHTF18 Silent p.L541L 0.29 TCGA-JW-A5VL-01 16 85722552 85722552 C G GINS2 5'UTR 0.47 TCGA-JW-A5VL-01 16 85834864 85834864 C G COX4I1 Missense_Mutation p.S18C 0.41 deleterious(0.03) probably_damaging(0.993) TCGA-JW-A5VL-01 16 87336584 87336584 C T C16orf95 3'UTR 0.36 TCGA-JW-A5VL-01 16 88499327 88499327 C G ZNF469 Missense_Mutation p.L1789V 0.33 probably_damaging(0.981) TCGA-JW-A5VL-01 16 88744285 88744285 G A SNAI3 3'UTR 0.27 TCGA-JW-A5VL-01 16 88744309 88744309 G C SNAI3 3'UTR 0.24 TCGA-JW-A5VL-01 16 88744498 88744498 G A SNAI3 3'UTR 0.16 TCGA-JW-A5VL-01 16 88744660 88744660 G A SNAI3 3'UTR 0.28 TCGA-JW-A5VL-01 16 88801568 88801568 C T PIEZO1 Silent p.L548L 0.47 TCGA-JW-A5VL-01 16 88871284 88871284 G A CDT1 Missense_Mutation p.E156K 0.43 tolerated(0.35) benign(0.001) TCGA-JW-A5VL-01 16 89251670 89251670 A G CDH15 Missense_Mutation p.S198G 0.47 tolerated(0.19) benign(0.02) TCGA-JW-A5VL-01 16 89293162 89293162 G A ZNF778 Missense_Mutation p.E128K 0.40 tolerated(0.12) benign(0.1) TCGA-JW-A5VL-01 16 89718046 89718046 C G CHMP1A Silent p.A12A 0.51 TCGA-JW-A5VL-01 16 89940059 89940059 C G TCF25 5'UTR 0.39 TCGA-JW-A5VL-01 16 89940069 89940069 C T TCF25 5'UTR 0.35 TCGA-JW-A5VL-01 16 89940235 89940235 G C TCF25 Missense_Mutation p.E54Q 0.40 tolerated(0.27) benign(0.007) TCGA-JW-A5VL-01 16 89985502 89985502 G C MC1R 5'UTR 0.54 TCGA-JW-A5VL-01 17 10536037 10536037 G A MYH3 Missense_Mutation p.S1571L 0.38 deleterious(0.03) benign(0.001) TCGA-JW-A5VL-01 17 13503886 13503886 G A HS3ST3A1 Silent p.F187F 0.44 TCGA-JW-A5VL-01 17 1416750 1416750 G C INPP5K Missense_Mutation p.I86M 0.44 deleterious(0.01) benign(0.076) TCGA-JW-A5VL-01 17 14249232 14249232 G C HS3ST3B1 3'UTR 0.36 TCGA-JW-A5VL-01 17 15554673 15554673 G C RP11-385D13.1 Missense_Mutation p.T84S 0.45 tolerated_low_confidence(0.85) benign(0.037) TCGA-JW-A5VL-01 17 16692371 16692371 G C CCDC144A Intron 0.31 TCGA-JW-A5VL-01 17 17380526 17380526 G C MED9 Silent p.A57A 0.40 TCGA-JW-A5VL-01 17 17412829 17412829 C T PEMT Missense_Mutation p.R166K 0.33 tolerated(0.95) benign(0.175) TCGA-JW-A5VL-01 17 17699089 17699089 G C RAI1 Missense_Mutation p.E943Q 0.40 tolerated(0.15) possibly_damaging(0.7) TCGA-JW-A5VL-01 17 18219287 18219287 G C SMCR8 Missense_Mutation p.E62Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 17 18221437 18221437 G C SMCR8 Missense_Mutation p.Q778H 0.41 deleterious(0.03) probably_damaging(0.998) TCGA-JW-A5VL-01 17 18286482 18286482 G A EVPLL Missense_Mutation p.V219M 0.29 tolerated(0.08) possibly_damaging(0.763) TCGA-JW-A5VL-01 17 18397862 18397862 G A LGALS9C 3'UTR 0.19 TCGA-JW-A5VL-01 17 1840862 1840862 G C RTN4RL1 Missense_Mutation p.S85W 0.45 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 17 18416193 18416193 C G USP32P2 RNA 0.33 TCGA-JW-A5VL-01 17 18565291 18565291 G C ZNF286B Missense_Mutation p.L510V 0.15 deleterious(0) possibly_damaging(0.527) TCGA-JW-A5VL-01 17 18967239 18967239 C G SNORD3B-2 RNA 0.17 TCGA-JW-A5VL-01 17 19091539 19091539 G C SNORD3A RNA 0.14 TCGA-JW-A5VL-01 17 19186876 19186876 C G EPN2 Silent p.L148L 0.49 TCGA-JW-A5VL-01 17 19318403 19318403 G C RNF112 Silent p.L393L 0.44 TCGA-JW-A5VL-01 17 19605921 19605921 G C SLC47A2 Missense_Mutation p.I423M 0.42 tolerated(0.16) benign(0.424) TCGA-JW-A5VL-01 17 20107794 20107794 G A SPECC1 Silent p.T144T 0.50 TCGA-JW-A5VL-01 17 21320124 21320124 G A KCNJ12 3'UTR 0.24 TCGA-JW-A5VL-01 17 2186062 2186062 C G SMG6 Missense_Mutation p.G847A 0.43 tolerated(0.22) benign(0.013) TCGA-JW-A5VL-01 17 2196193 2196193 C T SMG6 Missense_Mutation p.D744N 0.53 tolerated(0.09) possibly_damaging(0.627) TCGA-JW-A5VL-01 17 2226946 2226946 C G SRR Intron 0.41 TCGA-JW-A5VL-01 17 2381091 2381091 C G METTL16 Missense_Mutation p.E73Q 0.53 deleterious(0.01) probably_damaging(0.988) TCGA-JW-A5VL-01 17 26108139 26108139 G A NOS2 Nonsense_Mutation p.Q263* 0.26 TCGA-JW-A5VL-01 17 26674983 26674983 G A POLDIP2 3'UTR 0.44 TCGA-JW-A5VL-01 17 26911397 26911397 C T SPAG5 Missense_Mutation p.E755K 0.42 deleterious(0.04) possibly_damaging(0.447) TCGA-JW-A5VL-01 17 27037975 27037975 G A PROCA1 Intron 0.41 TCGA-JW-A5VL-01 17 27037983 27037983 G A PROCA1 Intron 0.44 TCGA-JW-A5VL-01 17 27064323 27064323 G C NEK8 Splice_Site p.X207_splice 0.54 TCGA-JW-A5VL-01 17 27075394 27075394 C T TRAF4 Nonsense_Mutation p.Q193* 0.42 TCGA-JW-A5VL-01 17 27778620 27778620 C G TAOK1 Silent p.L18L 0.17 TCGA-JW-A5VL-01 17 27837950 27837950 G C TAOK1 Silent p.L548L 0.47 TCGA-JW-A5VL-01 17 27849331 27849331 G C TAOK1 Missense_Mutation p.E648Q 0.37 deleterious(0.03) benign(0.444) TCGA-JW-A5VL-01 17 27870407 27870407 C T TAOK1 3'UTR 0.36 TCGA-JW-A5VL-01 17 27940840 27940840 G A ANKRD13B 3'UTR 0.36 TCGA-JW-A5VL-01 17 27977792 27977792 C T SSH2 Missense_Mutation p.R342Q 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VL-01 17 28512600 28512600 G A NSRP1 Missense_Mutation p.E529K 0.29 tolerated(0.07) benign(0.038) TCGA-JW-A5VL-01 17 28793734 28793734 G A CPD 3'UTR 0.39 TCGA-JW-A5VL-01 17 29622065 29622065 G A OMG Missense_Mutation p.L429F 0.35 deleterious_low_confidence(0.03) unknown(0) TCGA-JW-A5VL-01 17 29652871 29652871 G T NF1 Silent p.L1623L 0.48 TCGA-JW-A5VL-01 17 29859300 29859300 G C RAB11FIP4 3'UTR 0.60 TCGA-JW-A5VL-01 17 30981585 30981585 G C MYO1D Silent p.V800V 0.31 TCGA-JW-A5VL-01 17 3324457 3324457 C G OR3A3 Missense_Mutation p.S199C 0.42 deleterious(0) possibly_damaging(0.847) TCGA-JW-A5VL-01 17 33289069 33289069 G C ZNF830 Missense_Mutation p.E162Q 0.42 deleterious(0.02) possibly_damaging(0.625) TCGA-JW-A5VL-01 17 33328397 33328397 C G LIG3 Missense_Mutation p.S818C 0.44 deleterious(0) possibly_damaging(0.76) TCGA-JW-A5VL-01 17 33448464 33448464 C G RAD51L3-RFFL 5'UTR 0.48 TCGA-JW-A5VL-01 17 33806930 33806930 G C SLFN12L Missense_Mutation p.S100C 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-JW-A5VL-01 17 33951604 33951604 G C AP2B1 Missense_Mutation p.Q238H 0.53 deleterious(0.01) benign(0.015) TCGA-JW-A5VL-01 17 34234194 34234194 C G AC015849.16 RNA 0.73 TCGA-JW-A5VL-01 17 35443978 35443978 C A ACACA 3'UTR 0.35 TCGA-JW-A5VL-01 17 36288227 36288227 A G TBC1D3F Missense_Mutation p.N105D 0.03 tolerated(0.1) possibly_damaging(0.88) TCGA-JW-A5VL-01 17 36361791 36361791 C T RP11-1407O15.2 Missense_Mutation p.R185Q 0.07 TCGA-JW-A5VL-01 17 36521234 36521234 G A SOCS7 Silent p.P334P 0.36 TCGA-JW-A5VL-01 17 36714613 36714613 G A SRCIN1 Missense_Mutation p.A684V 0.47 tolerated(0.28) benign(0.165) TCGA-JW-A5VL-01 17 36958280 36958280 G C CWC25 3'UTR 0.32 TCGA-JW-A5VL-01 17 37099097 37099097 G A FBXO47 Silent p.F339F 0.40 TCGA-JW-A5VL-01 17 38028610 38028610 G C ZPBP2 Missense_Mutation p.R165T 0.21 tolerated(0.07) benign(0.038) TCGA-JW-A5VL-01 17 38061111 38061111 G C GSDMB Missense_Mutation p.S402C 0.33 deleterious(0) probably_damaging(0.991) TCGA-JW-A5VL-01 17 38061148 38061148 C T GSDMB Missense_Mutation p.E390K 0.52 deleterious(0.01) probably_damaging(0.922) TCGA-JW-A5VL-01 17 38179451 38179451 G C MED24 Missense_Mutation p.S728C 0.46 deleterious(0.02) possibly_damaging(0.526) TCGA-JW-A5VL-01 17 38253437 38253437 G A NR1D1 Missense_Mutation p.S84L 0.22 tolerated(0.12) probably_damaging(0.95) TCGA-JW-A5VL-01 17 3828201 3828201 G C ATP2A3 3'Flank 0.39 TCGA-JW-A5VL-01 17 38318312 38318312 G A CASC3 Missense_Mutation p.D172N 0.40 deleterious(0) probably_damaging(0.985) TCGA-JW-A5VL-01 17 38547881 38547881 C G TOP2A Missense_Mutation p.D1382H 0.41 deleterious(0.01) benign(0.155) TCGA-JW-A5VL-01 17 38574164 38574164 G C TOP2A 5'UTR 0.42 TCGA-JW-A5VL-01 17 39087627 39087627 G C KRT23 Silent p.L159L 0.26 TCGA-JW-A5VL-01 17 39118419 39118419 G A KRT39 Nonsense_Mutation p.R331* 0.54 TCGA-JW-A5VL-01 17 39221590 39221590 C G KRTAP2-4 3'UTR 0.35 TCGA-JW-A5VL-01 17 39262414 39262414 C T KRTAP4-9 3'UTR 0.43 TCGA-JW-A5VL-01 17 39634664 39634664 C G KRT35 Silent p.L316L 0.43 TCGA-JW-A5VL-01 17 39658603 39658603 G T KRT13 Intron 0.37 TCGA-JW-A5VL-01 17 39659972 39659972 C T KRT13 Silent p.L167L 0.36 TCGA-JW-A5VL-01 17 39659978 39659978 C T KRT13 Splice_Site p.X166_splice 0.39 TCGA-JW-A5VL-01 17 39880311 39880311 G C HAP1 3'UTR 0.31 TCGA-JW-A5VL-01 17 39888584 39888584 C T HAP1 Silent p.L204L 0.37 TCGA-JW-A5VL-01 17 3999949 3999949 G C ZZEF1 Missense_Mutation p.S573C 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-JW-A5VL-01 17 40023427 40023427 C G ACLY 3'UTR 0.28 TCGA-JW-A5VL-01 17 40463860 40463860 C G STAT5A 3'UTR 0.31 TCGA-JW-A5VL-01 17 40723670 40723670 C T MLX 3'UTR 0.37 TCGA-JW-A5VL-01 17 40847810 40847810 C T CNTNAP1 Silent p.F1088F 0.42 TCGA-JW-A5VL-01 17 40857136 40857136 C G EZH1 Missense_Mutation p.K635N 0.55 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 17 40950669 40950669 C G COA3 Missense_Mutation p.D11H 0.58 deleterious_low_confidence(0.02) benign(0.126) TCGA-JW-A5VL-01 17 40951157 40951157 G A CNTD1 Silent p.T24T 0.37 TCGA-JW-A5VL-01 17 41177413 41177413 G C RND2 Missense_Mutation p.E17Q 0.28 tolerated(1) benign(0.003) TCGA-JW-A5VL-01 17 41955285 41955285 C G MPP2 Missense_Mutation p.D517H 0.42 deleterious(0.01) probably_damaging(1) TCGA-JW-A5VL-01 17 42255079 42255079 G A ASB16 Missense_Mutation p.E389K 0.41 deleterious(0.01) possibly_damaging(0.839) TCGA-JW-A5VL-01 17 42337808 42337808 C G SLC4A1 Missense_Mutation p.R150P 0.38 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 17 42786153 42786153 G A DBF4B 5'UTR 0.29 TCGA-JW-A5VL-01 17 43229019 43229019 C T HEXIM1 3'UTR 0.42 TCGA-JW-A5VL-01 17 43246675 43246675 G C HEXIM2 Missense_Mutation p.Q120H 0.31 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 17 43246703 43246703 G C HEXIM2 Missense_Mutation p.E130Q 0.34 tolerated(0.13) benign(0.026) TCGA-JW-A5VL-01 17 43246907 43246907 G A HEXIM2 Missense_Mutation p.E198K 0.33 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 17 43246949 43246949 G C HEXIM2 Missense_Mutation p.E212Q 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-JW-A5VL-01 17 43247063 43247063 G C HEXIM2 Missense_Mutation p.E250Q 0.27 tolerated(0.32) possibly_damaging(0.537) TCGA-JW-A5VL-01 17 43509683 43509683 G C PLEKHM1 3'Flank 0.40 TCGA-JW-A5VL-01 17 43585779 43585779 G A LRRC37A4P Intron 0.39 TCGA-JW-A5VL-01 17 43713654 43713654 C T CRHR1-IT1 RNA 0.50 TCGA-JW-A5VL-01 17 44630796 44630796 G A LRRC37A2 Missense_Mutation p.D1614N 0.31 tolerated(0.24) probably_damaging(0.971) TCGA-JW-A5VL-01 17 44788416 44788416 G A NSF Missense_Mutation p.D520N 0.32 tolerated(0.05) benign(0.087) TCGA-JW-A5VL-01 17 45013027 45013027 G C GOSR2 Intron 0.32 TCGA-JW-A5VL-01 17 45013035 45013035 G A GOSR2 Intron 0.35 TCGA-JW-A5VL-01 17 45925843 45925843 C A SP6 5'UTR 0.29 TCGA-JW-A5VL-01 17 46198670 46198670 G C SNX11 Missense_Mutation p.E205Q 0.43 tolerated_low_confidence(0.05) benign(0.1) TCGA-JW-A5VL-01 17 4622635 4622635 C G ARRB2 Silent p.L300L 0.39 TCGA-JW-A5VL-01 17 46628394 46628394 G T HOXB3 Missense_Mutation p.L200M 0.40 deleterious(0) probably_damaging(0.991) TCGA-JW-A5VL-01 17 46628395 46628395 C T HOXB3 Silent p.Q199Q 0.40 TCGA-JW-A5VL-01 17 4688890 4688890 G A VMO1 Missense_Mutation p.R126C 0.45 deleterious(0.01) probably_damaging(1) TCGA-JW-A5VL-01 17 4689317 4689317 C T VMO1 Missense_Mutation p.D76N 0.37 tolerated(0.08) benign(0.331) TCGA-JW-A5VL-01 17 47004609 47004609 C G UBE2Z 3'UTR 0.59 TCGA-JW-A5VL-01 17 47119632 47119632 G A IGF2BP1 Missense_Mutation p.E324K 0.34 deleterious(0.03) possibly_damaging(0.594) TCGA-JW-A5VL-01 17 4722450 4722450 G T PLD2 Missense_Mutation p.V749F 0.10 deleterious(0.01) possibly_damaging(0.774) TCGA-JW-A5VL-01 17 4805057 4805057 C G C17orf107 3'UTR 0.23 TCGA-JW-A5VL-01 17 48258430 48258430 G A COL1A1 3'Flank 0.39 TCGA-JW-A5VL-01 17 48276789 48276789 C T COL1A1 Missense_Mutation p.R120Q 0.29 unknown(0) TCGA-JW-A5VL-01 17 4859940 4859940 C T ENO3 Silent p.F380F 0.38 TCGA-JW-A5VL-01 17 4863765 4863765 C G SPAG7 Missense_Mutation p.E77D 0.50 tolerated(0.17) benign(0.392) TCGA-JW-A5VL-01 17 48655898 48655898 C A CACNA1G Silent p.L758L 0.31 TCGA-JW-A5VL-01 17 48685357 48685357 G A CACNA1G Missense_Mutation p.R1561Q 0.43 deleterious(0.03) benign(0.064) TCGA-JW-A5VL-01 17 48822088 48822088 G A LUC7L3 Missense_Mutation p.D203N 0.24 deleterious(0) unknown(0) TCGA-JW-A5VL-01 17 4883075 4883075 G A CAMTA2 Silent p.I537I 0.34 TCGA-JW-A5VL-01 17 48917537 48917537 G A WFIKKN2 Silent p.L296L 0.35 TCGA-JW-A5VL-01 17 4904074 4904074 C G KIF1C Missense_Mutation p.I38M 0.41 tolerated(0.17) benign(0.032) TCGA-JW-A5VL-01 17 4916990 4916990 G C KIF1C Missense_Mutation p.E512Q 0.40 deleterious(0) possibly_damaging(0.727) TCGA-JW-A5VL-01 17 5283686 5283686 C G RABEP1 Missense_Mutation p.Q767E 0.55 tolerated(0.92) benign(0.004) TCGA-JW-A5VL-01 17 53150329 53150329 G C STXBP4 Missense_Mutation p.Q360H 0.39 deleterious(0) probably_damaging(0.917) TCGA-JW-A5VL-01 17 53399678 53399678 G C HLF 3'UTR 0.28 TCGA-JW-A5VL-01 17 5418805 5418805 G C NLRP1 Missense_Mutation p.P1364A 0.36 tolerated(0.1) benign(0.236) TCGA-JW-A5VL-01 17 5436619 5436619 C G NLRP1 Intron 0.38 TCGA-JW-A5VL-01 17 54543853 54543853 C G ANKFN1 Nonsense_Mutation p.S568* 0.59 TCGA-JW-A5VL-01 17 55065599 55065599 C G SCPEP1 Nonsense_Mutation p.S165* 0.33 TCGA-JW-A5VL-01 17 55123001 55123001 G A RNF126P1 RNA 0.43 TCGA-JW-A5VL-01 17 56277152 56277152 G A EPX Missense_Mutation p.E512K 0.31 deleterious(0) possibly_damaging(0.768) TCGA-JW-A5VL-01 17 56378605 56378605 G C BZRAP1 3'Flank 0.36 TCGA-JW-A5VL-01 17 56393399 56393399 C G BZRAP1 Missense_Mutation p.D695H 0.38 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 17 56431087 56431087 G A RNF43 3'UTR 0.35 TCGA-JW-A5VL-01 17 56572509 56572509 C G MTMR4 Silent p.L998L 0.54 TCGA-JW-A5VL-01 17 56676893 56676893 C G TEX14 Missense_Mutation p.E611Q 0.49 tolerated(0.48) benign(0.049) TCGA-JW-A5VL-01 17 57287808 57287808 C T SMG8 Silent p.S132S 0.32 TCGA-JW-A5VL-01 17 57754406 57754406 G C CLTC Missense_Mutation p.D885H 0.38 deleterious(0) probably_damaging(0.987) TCGA-JW-A5VL-01 17 57761320 57761320 C G CLTC Missense_Mutation p.L1470V 0.39 tolerated(0.1) probably_damaging(0.964) TCGA-JW-A5VL-01 17 58011881 58011881 G A RPS6KB1 Missense_Mutation p.G289E 0.51 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 17 58121197 58121197 C T HEATR6 Missense_Mutation p.M1091I 0.41 tolerated(1) benign(0) TCGA-JW-A5VL-01 17 59760950 59760950 C G BRIP1 Missense_Mutation p.D1153H 0.38 deleterious_low_confidence(0.02) probably_damaging(0.91) TCGA-JW-A5VL-01 17 59958458 59958458 C T INTS2 Missense_Mutation p.E730K 0.38 deleterious(0.04) benign(0.049) TCGA-JW-A5VL-01 17 60021132 60021132 G C MED13 3'UTR 0.37 TCGA-JW-A5VL-01 17 60040170 60040170 G A MED13 Silent p.C1669C 0.25 TCGA-JW-A5VL-01 17 60040171 60040171 C A MED13 Missense_Mutation p.C1669F 0.24 deleterious(0) probably_damaging(0.993) TCGA-JW-A5VL-01 17 60799927 60799927 C T MARCH10 Silent p.E712E 0.27 TCGA-JW-A5VL-01 17 61497691 61497691 C T TANC2 Missense_Mutation p.R1450W 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.617) TCGA-JW-A5VL-01 17 61568382 61568382 G C ACE Silent p.S903S 0.39 TCGA-JW-A5VL-01 17 61573764 61573764 C T ACE Silent p.V1130V 0.41 TCGA-JW-A5VL-01 17 62122227 62122227 C G ERN1 Missense_Mutation p.R905T 0.44 deleterious(0) probably_damaging(0.975) TCGA-JW-A5VL-01 17 62225994 62225994 C T TEX2 3'UTR 0.39 TCGA-JW-A5VL-01 17 62290576 62290576 C G TEX2 Missense_Mutation p.L334F 0.28 tolerated(0.09) benign(0.361) TCGA-JW-A5VL-01 17 62496313 62496313 C G DDX5 Missense_Mutation p.D525H 0.45 tolerated_low_confidence(0.32) possibly_damaging(0.549) TCGA-JW-A5VL-01 17 62542010 62542010 G C SMURF2 Missense_Mutation p.L735V 0.33 deleterious(0.01) possibly_damaging(0.58) TCGA-JW-A5VL-01 17 62891142 62891142 G A LRRC37A3 Missense_Mutation p.S745L 0.38 tolerated(0.24) benign(0.351) TCGA-JW-A5VL-01 17 64187804 64187804 C G CEP112 5'UTR 0.08 TCGA-JW-A5VL-01 17 64783006 64783006 G A PRKCA Missense_Mutation p.E543K 0.39 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VL-01 17 65029018 65029018 C T CACNG4 3'UTR 0.32 TCGA-JW-A5VL-01 17 6547126 6547126 G T MED31 3'UTR 0.44 TCGA-JW-A5VL-01 17 65850325 65850325 C G BPTF Missense_Mutation p.L295V 0.37 possibly_damaging(0.711) TCGA-JW-A5VL-01 17 66871433 66871433 C T ABCA8 Silent p.L1493L 0.12 TCGA-JW-A5VL-01 17 66914283 66914283 G C ABCA8 Nonsense_Mutation p.S611* 0.14 TCGA-JW-A5VL-01 17 66933157 66933157 G A ABCA8 Missense_Mutation p.S134L 0.06 deleterious(0.01) possibly_damaging(0.855) TCGA-JW-A5VL-01 17 67014661 67014661 G C ABCA9 Nonsense_Mutation p.S887* 0.27 TCGA-JW-A5VL-01 17 67171598 67171598 G A ABCA10 Silent p.I942I 0.26 TCGA-JW-A5VL-01 17 67186575 67186575 C T ABCA10 Silent p.R685R 0.19 TCGA-JW-A5VL-01 17 6797684 6797684 G A AC027763.2 Intron 0.42 TCGA-JW-A5VL-01 17 68173001 68173001 G A KCNJ2 3'UTR 0.48 TCGA-JW-A5VL-01 17 685696 685696 G C RNMTL1 Silent p.A26A 0.42 TCGA-JW-A5VL-01 17 7216714 7216714 G C GPS2 Missense_Mutation p.Q237E 0.70 tolerated_low_confidence(0.26) benign(0.087) TCGA-JW-A5VL-01 17 7240053 7240053 G C ACAP1 5'UTR 0.47 TCGA-JW-A5VL-01 17 72462786 72462786 C A CD300A 5'UTR 0.78 TCGA-JW-A5VL-01 17 72741031 72741031 G C RAB37 Missense_Mutation p.R156T 0.67 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VL-01 17 72995616 72995616 G C CDR2L Missense_Mutation p.E33Q 0.67 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 17 73234343 73234343 C T GGA3 3'UTR 0.87 TCGA-JW-A5VL-01 17 7365840 7365840 C G ZBTB4 Missense_Mutation p.E821Q 0.51 probably_damaging(0.91) TCGA-JW-A5VL-01 17 73759142 73759142 G A GALK1 Silent p.F188F 0.60 TCGA-JW-A5VL-01 17 73760097 73760097 G A GALK1 Missense_Mutation p.S79F 0.61 tolerated(0.1) benign(0.031) TCGA-JW-A5VL-01 17 73824970 73824970 C T UNC13D Missense_Mutation p.E1017K 0.80 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 17 73945634 73945634 C T ACOX1 Missense_Mutation p.R509K 0.77 tolerated(0.17) benign(0.001) TCGA-JW-A5VL-01 17 7416923 7416923 C T POLR2A Silent p.S1780S 0.41 TCGA-JW-A5VL-01 17 74381246 74381246 G A SPHK1 Silent p.P20P 0.92 TCGA-JW-A5VL-01 17 74392782 74392782 C T UBE2O Missense_Mutation p.G746R 0.76 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 17 74732516 74732516 C G SRSF2 Silent p.R131R 0.62 TCGA-JW-A5VL-01 17 74732932 74732932 C T SRSF2 Missense_Mutation p.G104E 0.85 tolerated(0.5) unknown(0) TCGA-JW-A5VL-01 17 7478464 7478464 C A EIF4A1 Missense_Mutation p.S78Y 0.40 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 17 74878408 74878408 G A MGAT5B Intron 0.59 TCGA-JW-A5VL-01 17 7643227 7643227 G C DNAH2 Missense_Mutation p.K449N 0.52 benign(0.34) TCGA-JW-A5VL-01 17 76570852 76570852 G C DNAH17 Silent p.L96L 0.72 TCGA-JW-A5VL-01 17 76968555 76968555 G C LGALS3BP Missense_Mutation p.F287L 0.73 tolerated(0.08) benign(0.252) TCGA-JW-A5VL-01 17 7750495 7750495 C T KDM6B Missense_Mutation p.R328W 0.42 unknown(0) TCGA-JW-A5VL-01 17 77708977 77708977 G A ENPP7 Missense_Mutation p.V179M 0.81 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VL-01 17 7810527 7810527 G C CHD3 Missense_Mutation p.E1643Q 0.35 benign(0.403) TCGA-JW-A5VL-01 17 78112897 78112897 G A EIF4A3 Silent p.I217I 0.59 TCGA-JW-A5VL-01 17 7833972 7833972 C T TRAPPC1 Silent p.L130L 0.50 TCGA-JW-A5VL-01 17 78866583 78866583 C T RPTOR Missense_Mutation p.S719F 0.61 deleterious(0.01) possibly_damaging(0.629) TCGA-JW-A5VL-01 17 79094733 79094733 G A AATK Silent p.L1001L 0.65 TCGA-JW-A5VL-01 17 79220838 79220838 C T SLC38A10 Missense_Mutation p.D697N 0.73 deleterious(0) probably_damaging(0.979) TCGA-JW-A5VL-01 17 79409042 79409042 G C RP11-1055B8.7 Missense_Mutation p.E223Q 0.69 probably_damaging(0.986) TCGA-JW-A5VL-01 17 79423343 79423343 G C RP11-1055B8.7 Missense_Mutation p.K1530N 0.75 possibly_damaging(0.585) TCGA-JW-A5VL-01 17 79525067 79525067 C T NPLOC4 3'UTR 0.82 TCGA-JW-A5VL-01 17 79892976 79892976 G A PYCR1 Silent p.T122T 0.85 TCGA-JW-A5VL-01 17 80206854 80206854 C G CSNK1D Missense_Mutation p.R365T 0.71 deleterious_low_confidence(0.05) benign(0.009) TCGA-JW-A5VL-01 17 80399095 80399095 C G HEXDC Nonsense_Mutation p.S402* 0.67 TCGA-JW-A5VL-01 17 80789562 80789563 - GTAGATGGGG ZNF750 Frame_Shift_Ins p.S257Pfs*14 0.47 TCGA-JW-A5VL-01 17 8157234 8157234 C G PFAS 5'UTR 0.41 TCGA-JW-A5VL-01 17 8161487 8161487 G C PFAS Missense_Mutation p.D436H 0.59 tolerated(0.11) benign(0.002) TCGA-JW-A5VL-01 17 8248714 8248714 G C ODF4 Missense_Mutation p.E170Q 0.39 deleterious(0.01) probably_damaging(0.98) TCGA-JW-A5VL-01 17 8379172 8379172 C T MYH10 Missense_Mutation p.E1992K 0.49 benign(0.073) TCGA-JW-A5VL-01 17 8390882 8390882 C T MYH10 Missense_Mutation p.E1639K 0.33 probably_damaging(0.994) TCGA-JW-A5VL-01 17 8424545 8424545 G A MYH10 Silent p.S672S 0.42 TCGA-JW-A5VL-01 17 900554 900554 G A TIMM22 Missense_Mutation p.E58K 0.43 deleterious(0.01) benign(0.194) TCGA-JW-A5VL-01 17 9603499 9603499 C T USP43 Missense_Mutation p.L490F 0.42 tolerated(0.26) benign(0.078) TCGA-JW-A5VL-01 18 10468599 10468599 G A APCDD1 Silent p.R64R 0.31 TCGA-JW-A5VL-01 18 12353040 12353040 C G AFG3L2 Missense_Mutation p.E428Q 0.46 deleterious(0) probably_damaging(0.962) TCGA-JW-A5VL-01 18 12884092 12884092 G A PTPN2 Missense_Mutation p.R17C 0.24 tolerated(0.05) benign(0) TCGA-JW-A5VL-01 18 19021373 19021373 C G GREB1L Missense_Mutation p.S361C 0.43 tolerated(0.08) possibly_damaging(0.893) TCGA-JW-A5VL-01 18 19996018 19996018 G C CTAGE1 Nonsense_Mutation p.S586* 0.38 TCGA-JW-A5VL-01 18 20573147 20573147 G C RBBP8 Missense_Mutation p.E453Q 0.47 deleterious(0.01) possibly_damaging(0.798) TCGA-JW-A5VL-01 18 21487560 21487560 G A LAMA3 Silent p.V2255V 0.41 TCGA-JW-A5VL-01 18 24435557 24435557 G C AQP4 3'UTR 0.29 TCGA-JW-A5VL-01 18 30092482 30092482 C T WBP11P1 RNA 0.38 TCGA-JW-A5VL-01 18 30252988 30252988 C G KLHL14 3'UTR 0.38 TCGA-JW-A5VL-01 18 3067195 3067195 C T MYOM1 3'UTR 0.41 TCGA-JW-A5VL-01 18 32398254 32398254 C G DTNA Missense_Mutation p.S279C 0.42 deleterious(0.03) probably_damaging(0.927) TCGA-JW-A5VL-01 18 32823310 32823310 G C ZNF397 Intron 0.43 TCGA-JW-A5VL-01 18 32918921 32918921 C A ZNF24 Intron 0.38 TCGA-JW-A5VL-01 18 33740957 33740957 C T ELP2 Missense_Mutation p.S649L 0.33 deleterious(0.04) possibly_damaging(0.656) TCGA-JW-A5VL-01 18 40854012 40854012 C A SYT4 Nonsense_Mutation p.E128* 0.32 TCGA-JW-A5VL-01 18 42532104 42532104 C G SETBP1 Silent p.L933L 0.45 TCGA-JW-A5VL-01 18 43535289 43535289 C T EPG5 Missense_Mutation p.E27K 0.29 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-JW-A5VL-01 18 44036634 44036634 C T RNF165 3'UTR 0.41 TCGA-JW-A5VL-01 18 44126883 44126883 G C LOXHD1 Silent p.L52L 0.33 TCGA-JW-A5VL-01 18 47310231 47310231 G A ACAA2 Nonsense_Mutation p.Q394* 0.37 TCGA-JW-A5VL-01 18 47463690 47463690 C G MYO5B Silent p.S610S 0.41 TCGA-JW-A5VL-01 18 47812538 47812538 C T CXXC1 Missense_Mutation p.E105K 0.39 tolerated(0.14) benign(0.158) TCGA-JW-A5VL-01 18 50278647 50278647 C G DCC Silent p.S105S 0.42 TCGA-JW-A5VL-01 18 51681200 51681200 C T MBD2 3'UTR 0.38 TCGA-JW-A5VL-01 18 52890797 52890797 G A TCF4 3'Flank 0.48 TCGA-JW-A5VL-01 18 55024207 55024207 G C ST8SIA3 Silent p.R122R 0.28 TCGA-JW-A5VL-01 18 55217796 55217796 C G FECH 3'UTR 0.31 TCGA-JW-A5VL-01 18 55289069 55289069 G C NARS 5'UTR 0.42 TCGA-JW-A5VL-01 18 55816685 55816685 G A NEDD4L Intron 0.47 TCGA-JW-A5VL-01 18 5891520 5891520 G A TMEM200C Silent p.I181I 0.29 TCGA-JW-A5VL-01 18 59928806 59928806 G C KIAA1468 Missense_Mutation p.L755F 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-JW-A5VL-01 18 59947665 59947665 G A KIAA1468 Missense_Mutation p.D1014N 0.41 deleterious(0.01) probably_damaging(1) TCGA-JW-A5VL-01 18 59973358 59973358 C T KIAA1468 3'UTR 0.36 TCGA-JW-A5VL-01 18 60986188 60986188 G A BCL2 5'UTR 0.45 TCGA-JW-A5VL-01 18 61597293 61597293 C T SERPINB10 Missense_Mutation p.L169F 0.42 deleterious(0.01) probably_damaging(1) TCGA-JW-A5VL-01 18 61649015 61649015 G A SERPINB8 Missense_Mutation p.E123K 0.40 tolerated(1) benign(0.004) TCGA-JW-A5VL-01 18 670729 670729 C G TYMS Silent p.L198L 0.42 TCGA-JW-A5VL-01 18 67344975 67344975 G C DOK6 Missense_Mutation p.E99Q 0.36 tolerated(0.05) possibly_damaging(0.612) TCGA-JW-A5VL-01 18 67614101 67614101 G A CD226 Missense_Mutation p.S84L 0.37 tolerated(0.06) benign(0.286) TCGA-JW-A5VL-01 18 67864892 67864892 C T RTTN Missense_Mutation p.E221K 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-JW-A5VL-01 18 67993887 67993887 G A SOCS6 3'UTR 0.36 TCGA-JW-A5VL-01 18 73001803 73001803 G C TSHZ1 3'UTR 0.44 TCGA-JW-A5VL-01 18 74639327 74639327 C G ZNF236 Missense_Mutation p.S1421C 0.26 deleterious(0.05) possibly_damaging(0.469) TCGA-JW-A5VL-01 18 77659699 77659699 C T KCNG2 Silent p.A428A 0.38 TCGA-JW-A5VL-01 18 9557315 9557315 C T PPP4R1 Silent p.L698L 0.36 TCGA-JW-A5VL-01 18 9845603 9845603 G C RAB31 Missense_Mutation p.K135N 0.48 deleterious(0.05) benign(0.411) TCGA-JW-A5VL-01 18 9944918 9944918 C G VAPA Intron 0.56 TCGA-JW-A5VL-01 19 10370507 10370507 G A MRPL4 3'UTR 0.48 TCGA-JW-A5VL-01 19 1042338 1042338 C T ABCA7 Missense_Mutation p.S147F 0.28 tolerated(0.06) benign(0.019) TCGA-JW-A5VL-01 19 10461627 10461627 C G TYK2 Missense_Mutation p.K1149N 0.43 deleterious(0.01) probably_damaging(0.936) TCGA-JW-A5VL-01 19 10461768 10461768 C T TYK2 Missense_Mutation p.R1130Q 0.44 tolerated(0.17) benign(0.016) TCGA-JW-A5VL-01 19 10461781 10461781 C G TYK2 Missense_Mutation p.E1126Q 0.38 deleterious(0.03) possibly_damaging(0.627) TCGA-JW-A5VL-01 19 10461839 10461839 C T TYK2 Splice_Site p.X1107_splice 0.30 TCGA-JW-A5VL-01 19 10463228 10463228 C T TYK2 Splice_Site p.X1067_splice 0.45 TCGA-JW-A5VL-01 19 10571734 10571734 G A PDE4A Missense_Mutation p.D474N 0.56 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 19 1081908 1081908 C A HMHA1 Nonsense_Mutation p.S838* 0.49 TCGA-JW-A5VL-01 19 10943137 10943137 G A TMED1 3'UTR 0.55 TCGA-JW-A5VL-01 19 11362920 11362920 G C DOCK6 Missense_Mutation p.Q128E 0.35 tolerated(0.22) possibly_damaging(0.489) TCGA-JW-A5VL-01 19 11849729 11849729 C G ZNF823 5'UTR 0.41 TCGA-JW-A5VL-01 19 11943834 11943834 C T ZNF440 3'UTR 0.38 TCGA-JW-A5VL-01 19 12223501 12223501 G C ZNF788 Missense_Mutation p.C380S 0.49 deleterious(0) benign(0.001) TCGA-JW-A5VL-01 19 12297438 12297438 G A ZNF136 Missense_Mutation p.G82E 0.41 tolerated(1) benign(0.024) TCGA-JW-A5VL-01 19 12298265 12298265 C G ZNF136 Missense_Mutation p.H358D 0.26 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 19 12902990 12902990 C T JUNB Silent p.F135F 0.55 TCGA-JW-A5VL-01 19 12936535 12936535 G A RTBDN Silent p.S257S 0.40 TCGA-JW-A5VL-01 19 13226520 13226520 C G TRMT1 Missense_Mutation p.E125Q 0.40 tolerated(0.09) benign(0.016) TCGA-JW-A5VL-01 19 13616813 13616813 G A CACNA1A Missense_Mutation p.R76W 0.37 possibly_damaging(0.835) TCGA-JW-A5VL-01 19 1399193 1399193 C G GAMT Silent p.G131G 0.43 TCGA-JW-A5VL-01 19 14042666 14042666 C T PODNL1 3'Flank 0.36 TCGA-JW-A5VL-01 19 14165969 14165969 G C PALM3 Missense_Mutation p.S157C 0.44 deleterious(0) probably_damaging(0.927) TCGA-JW-A5VL-01 19 14184042 14184042 C G hsa-mir-1199 Missense_Mutation p.S116C 0.25 tolerated_low_confidence(0.12) possibly_damaging(0.675) TCGA-JW-A5VL-01 19 1430218 1430218 C A DAZAP1 Intron 0.26 TCGA-JW-A5VL-01 19 14703135 14703135 C G CLEC17A Nonsense_Mutation p.S81* 0.40 TCGA-JW-A5VL-01 19 14779642 14779642 G C EMR3 Silent p.L16L 0.43 TCGA-JW-A5VL-01 19 1510944 1510944 G C ADAMTSL5 5'UTR 0.47 TCGA-JW-A5VL-01 19 15223195 15223195 C T SYDE1 Silent p.V539V 0.42 TCGA-JW-A5VL-01 19 15349236 15349236 C T BRD4 Missense_Mutation p.M1347I 0.64 benign(0) TCGA-JW-A5VL-01 19 15547730 15547730 C T WIZ Missense_Mutation p.R139Q 0.36 tolerated(0.14) benign(0.079) TCGA-JW-A5VL-01 19 15769098 15769098 C T CYP4F3 Silent p.F380F 0.44 TCGA-JW-A5VL-01 19 16986961 16986961 C T SIN3B Silent p.S928S 0.30 TCGA-JW-A5VL-01 19 17160668 17160668 G A HAUS8 3'UTR 0.48 TCGA-JW-A5VL-01 19 17305930 17305930 G C MYO9B Missense_Mutation p.E1232Q 0.26 tolerated(0.55) benign(0.003) TCGA-JW-A5VL-01 19 17405099 17405099 C A ABHD8 Nonsense_Mutation p.E383* 0.21 TCGA-JW-A5VL-01 19 17514607 17514607 C T BST2 Missense_Mutation p.R147K 0.37 tolerated_low_confidence(0.97) benign(0.016) TCGA-JW-A5VL-01 19 17948788 17948788 C G JAK3 Missense_Mutation p.E552Q 0.48 deleterious(0.02) benign(0.152) TCGA-JW-A5VL-01 19 18194269 18194269 C A IL12RB1 Missense_Mutation p.D33Y 0.43 deleterious(0) possibly_damaging(0.885) TCGA-JW-A5VL-01 19 18672688 18672688 G A KXD1 Intron 0.50 TCGA-JW-A5VL-01 19 18897339 18897339 C T COMP Intron 0.38 TCGA-JW-A5VL-01 19 18968252 18968252 C T UPF1 Silent p.L698L 0.36 TCGA-JW-A5VL-01 19 1925572 1925572 C T SCAMP4 3'UTR 0.38 TCGA-JW-A5VL-01 19 19339343 19339343 G C NCAN Missense_Mutation p.E972Q 0.43 tolerated(0.09) benign(0.048) TCGA-JW-A5VL-01 19 19351423 19351423 G C NCAN Missense_Mutation p.E1141Q 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-JW-A5VL-01 19 20149984 20149984 C G ZNF682 Intron 0.45 TCGA-JW-A5VL-01 19 20150174 20150174 C A ZNF682 5'UTR 0.34 TCGA-JW-A5VL-01 19 2042432 2042432 G C MKNK2 Silent p.L248L 0.53 TCGA-JW-A5VL-01 19 2042450 2042450 G C MKNK2 Missense_Mutation p.I242M 0.50 deleterious(0.02) probably_damaging(0.914) TCGA-JW-A5VL-01 19 2073318 2073318 G A MOB3A 3'UTR 0.43 TCGA-JW-A5VL-01 19 2226517 2226517 G A DOT1L Missense_Mutation p.D1333N 0.37 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-JW-A5VL-01 19 23544415 23544415 G A ZNF91 Missense_Mutation p.H456Y 0.31 deleterious(0.01) possibly_damaging(0.551) TCGA-JW-A5VL-01 19 24010639 24010639 G A RPSAP58 Missense_Mutation p.E226K 0.40 deleterious(0.03) benign(0.047) TCGA-JW-A5VL-01 19 2408436 2408436 G A TMPRSS9 Missense_Mutation p.V275M 0.44 deleterious(0) probably_damaging(0.973) TCGA-JW-A5VL-01 19 2408502 2408502 G C TMPRSS9 Missense_Mutation p.E297Q 0.43 tolerated(0.1) benign(0.113) TCGA-JW-A5VL-01 19 29213613 29213613 C G AC005307.3 RNA 0.31 TCGA-JW-A5VL-01 19 31039383 31039383 G C ZNF536 Missense_Mutation p.D953H 0.36 deleterious(0) possibly_damaging(0.479) TCGA-JW-A5VL-01 19 3118994 3118994 C A GNA11 Silent p.I226I 0.37 TCGA-JW-A5VL-01 19 3186080 3186080 C G NCLN Missense_Mutation p.L18V 0.29 tolerated(0.13) benign(0.025) TCGA-JW-A5VL-01 19 33699780 33699780 C T SLC7A10 3'UTR 0.30 TCGA-JW-A5VL-01 19 33703233 33703233 G A SLC7A10 Silent p.L251L 0.48 TCGA-JW-A5VL-01 19 33792306 33792306 G A CEBPA Missense_Mutation p.R339W 0.37 deleterious(0) probably_damaging(0.993) TCGA-JW-A5VL-01 19 34832880 34832880 G C KIAA0355 Missense_Mutation p.E681Q 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.794) TCGA-JW-A5VL-01 19 34844360 34844360 C G KIAA0355 3'UTR 0.33 TCGA-JW-A5VL-01 19 34846101 34846101 G A KIAA0355 3'UTR 0.39 TCGA-JW-A5VL-01 19 34916921 34916921 C G PDCD2L Missense_Mutation p.L325V 0.43 tolerated(0.08) possibly_damaging(0.874) TCGA-JW-A5VL-01 19 35176024 35176024 G A ZNF302 Missense_Mutation p.R361K 0.49 tolerated(0.06) benign(0.012) TCGA-JW-A5VL-01 19 3532042 3532042 C G FZR1 Silent p.L319L 0.23 TCGA-JW-A5VL-01 19 36036604 36036604 C G TMEM147 5'UTR 0.38 TCGA-JW-A5VL-01 19 36125187 36125187 G A RBM42 Silent p.K349K 0.44 TCGA-JW-A5VL-01 19 36229363 36229363 G C KMT2B Missense_Mutation p.E2685Q 0.43 probably_damaging(0.984) TCGA-JW-A5VL-01 19 36239657 36239657 C G LIN37 Nonsense_Mutation p.S11* 0.44 TCGA-JW-A5VL-01 19 36281675 36281675 G A ARHGAP33 3'Flank 0.61 TCGA-JW-A5VL-01 19 37101590 37101590 G A ZNF382 Missense_Mutation p.E60K 0.32 deleterious(0) benign(0.397) TCGA-JW-A5VL-01 19 37185718 37185718 C T ZNF567 5'UTR 0.46 TCGA-JW-A5VL-01 19 37238877 37238877 G A ZNF850 Missense_Mutation p.S1022L 0.32 deleterious(0.01) probably_damaging(0.961) TCGA-JW-A5VL-01 19 37441179 37441179 C T ZNF568 Missense_Mutation p.S375L 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-JW-A5VL-01 19 37733787 37733787 C T ZNF383 Silent p.L217L 0.50 TCGA-JW-A5VL-01 19 37734033 37734033 C T ZNF383 Nonsense_Mutation p.Q299* 0.33 TCGA-JW-A5VL-01 19 3778150 3778150 C G MATK 3'UTR 0.24 TCGA-JW-A5VL-01 19 37880844 37880844 G A ZNF527 3'UTR 0.33 TCGA-JW-A5VL-01 19 38189966 38189966 G C ZNF607 Missense_Mutation p.H356D 0.29 deleterious(0) benign(0.326) TCGA-JW-A5VL-01 19 3834980 3834980 C T ZFR2 Missense_Mutation p.A19T 0.43 tolerated(1) benign(0.184) TCGA-JW-A5VL-01 19 38382241 38382241 G C WDR87 Missense_Mutation p.I1076M 0.40 benign(0.028) TCGA-JW-A5VL-01 19 38382299 38382299 G C WDR87 Missense_Mutation p.S1057C 0.43 probably_damaging(0.921) TCGA-JW-A5VL-01 19 38782514 38782514 G A SPINT2 Silent p.L209L 0.47 TCGA-JW-A5VL-01 19 38857940 38857940 C G CATSPERG Missense_Mutation p.L920V 0.36 deleterious(0.05) possibly_damaging(0.567) TCGA-JW-A5VL-01 19 38910797 38910797 C G RASGRP4 Missense_Mutation p.Q161H 0.43 tolerated(1) probably_damaging(0.998) TCGA-JW-A5VL-01 19 39055628 39055628 C T RYR1 Silent p.F4218F 0.37 TCGA-JW-A5VL-01 19 39321776 39321776 C T ECH1 Silent p.S97S 0.05 TCGA-JW-A5VL-01 19 39361534 39361534 C T RINL Missense_Mutation p.E234K 0.38 tolerated(0.12) benign(0.021) TCGA-JW-A5VL-01 19 39408399 39408399 C G SARS2 Missense_Mutation p.Q377H 0.41 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 19 3964264 3964264 G C DAPK3 Missense_Mutation p.I177M 0.35 tolerated(0.18) possibly_damaging(0.621) TCGA-JW-A5VL-01 19 3964695 3964695 G A DAPK3 Silent p.F119F 0.41 TCGA-JW-A5VL-01 19 3964824 3964824 G A DAPK3 Silent p.I76I 0.37 TCGA-JW-A5VL-01 19 3984204 3984204 G A EEF2 Missense_Mutation p.R50W 0.44 deleterious(0) possibly_damaging(0.713) TCGA-JW-A5VL-01 19 39882224 39882224 C G MED29 Missense_Mutation p.F75L 0.43 tolerated(0.5) benign(0.142) TCGA-JW-A5VL-01 19 39898437 39898437 G C ZFP36 Missense_Mutation p.E33Q 0.38 tolerated_low_confidence(0.05) possibly_damaging(0.552) TCGA-JW-A5VL-01 19 39898586 39898586 C G ZFP36 Missense_Mutation p.F82L 0.46 tolerated(0.2) probably_damaging(0.994) TCGA-JW-A5VL-01 19 40319105 40319105 C G DYRK1B Silent p.L213L 0.45 TCGA-JW-A5VL-01 19 40364196 40364196 G A FCGBP Missense_Mutation p.R4816C 0.42 probably_damaging(0.978) TCGA-JW-A5VL-01 19 40434171 40434171 C T FCGBP Missense_Mutation p.R33K 0.47 benign(0.031) TCGA-JW-A5VL-01 19 40698542 40698542 C G MAP3K10 Missense_Mutation p.Q202E 0.46 deleterious(0) probably_damaging(0.987) TCGA-JW-A5VL-01 19 40901379 40901379 G A PRX Silent p.S960S 0.33 TCGA-JW-A5VL-01 19 40901380 40901380 G A PRX Missense_Mutation p.S960F 0.34 deleterious(0.01) possibly_damaging(0.683) TCGA-JW-A5VL-01 19 41388019 41388019 G C CYP2A7 Missense_Mutation p.L33V 0.49 deleterious(0) benign(0.383) TCGA-JW-A5VL-01 19 41399786 41399786 C G CYP2G1P RNA 0.36 TCGA-JW-A5VL-01 19 42259575 42259575 G A CEACAM6 Missense_Mutation p.R10K 0.49 tolerated(0.35) possibly_damaging(0.507) TCGA-JW-A5VL-01 19 42365220 42365220 C A RPS19 Silent p.V37V 0.36 TCGA-JW-A5VL-01 19 42585593 42585593 G A ZNF574 3'UTR 0.37 TCGA-JW-A5VL-01 19 42759179 42759179 G A AC006486.9 5'UTR 0.23 TCGA-JW-A5VL-01 19 42795012 42795012 G A CIC Missense_Mutation p.E698K 0.42 possibly_damaging(0.899) TCGA-JW-A5VL-01 19 4324072 4324072 G C STAP2 3'UTR 0.45 TCGA-JW-A5VL-01 19 43414888 43414888 G C PSG6 Missense_Mutation p.Q184E 0.42 deleterious(0.02) possibly_damaging(0.657) TCGA-JW-A5VL-01 19 4362348 4362348 G C SH3GL1 Missense_Mutation p.I296M 0.35 tolerated(0.39) benign(0.059) TCGA-JW-A5VL-01 19 44097210 44097210 G C IRGQ Silent p.G280G 0.41 TCGA-JW-A5VL-01 19 44418649 44418649 G A ZNF45 Silent p.F313F 0.40 TCGA-JW-A5VL-01 19 4513500 4513500 G C PLIN4 Missense_Mutation p.L144V 0.41 tolerated(0.42) benign(0.173) TCGA-JW-A5VL-01 19 4529814 4529814 G A PLIN5 Silent p.L107L 0.43 TCGA-JW-A5VL-01 19 45391612 45391612 C A PVRL2 Silent p.V531V 0.37 TCGA-JW-A5VL-01 19 45532204 45532204 C T RELB Silent p.C315C 0.48 TCGA-JW-A5VL-01 19 45895303 45895303 G A PPP1R13L Silent p.L550L 0.52 TCGA-JW-A5VL-01 19 46032593 46032593 G A OPA3 Silent p.I88I 0.38 TCGA-JW-A5VL-01 19 46144973 46144973 G C EML2 Silent p.L183L 0.42 TCGA-JW-A5VL-01 19 46270163 46270163 C G SIX5 Missense_Mutation p.E352Q 0.31 tolerated(0.25) possibly_damaging(0.645) TCGA-JW-A5VL-01 19 46271662 46271662 G C SIX5 Silent p.L147L 0.67 TCGA-JW-A5VL-01 19 46283366 46283366 G C DMPK 5'UTR 0.57 TCGA-JW-A5VL-01 19 46388059 46388059 C T IRF2BP1 Missense_Mutation p.G325E 0.35 deleterious(0) probably_damaging(0.972) TCGA-JW-A5VL-01 19 47575222 47575222 C T ZC3H4 Silent p.P653P 0.39 TCGA-JW-A5VL-01 19 47823375 47823375 C T C5AR1 Missense_Mutation p.S114F 0.41 deleterious(0) probably_damaging(0.989) TCGA-JW-A5VL-01 19 47910702 47910702 G A MEIS3 Missense_Mutation p.S327F 0.40 tolerated_low_confidence(0.73) benign(0.266) TCGA-JW-A5VL-01 19 4793205 4793205 C G FEM1A Missense_Mutation p.Q447E 0.47 tolerated(0.14) benign(0.183) TCGA-JW-A5VL-01 19 47941204 47941204 C T SLC8A2 Missense_Mutation p.E638K 0.33 tolerated(0.33) benign(0.119) TCGA-JW-A5VL-01 19 4816194 4816194 C T TICAM1 3'UTR 0.33 TCGA-JW-A5VL-01 19 4818198 4818198 C G TICAM1 Missense_Mutation p.L64F 0.38 deleterious(0.01) possibly_damaging(0.86) TCGA-JW-A5VL-01 19 48833688 48833688 C T EMP3 Silent p.V151V 0.29 TCGA-JW-A5VL-01 19 48988551 48988551 C G LMTK3 3'UTR 0.41 TCGA-JW-A5VL-01 19 49128925 49128925 G A SPHK2 Intron 0.42 TCGA-JW-A5VL-01 19 49299300 49299300 C T BCAT2 Intron 0.54 TCGA-JW-A5VL-01 19 49540125 49540125 C G CTB-60B18.6 5'UTR 0.39 TCGA-JW-A5VL-01 19 49565222 49565222 G C NTF4 Missense_Mutation p.I11M 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-JW-A5VL-01 19 49658077 49658077 C T HRC Missense_Mutation p.E140K 0.46 tolerated(0.05) possibly_damaging(0.899) TCGA-JW-A5VL-01 19 50365331 50365331 G A PNKP Silent p.L386L 0.22 TCGA-JW-A5VL-01 19 50365343 50365343 G T PNKP Silent p.L382L 0.25 TCGA-JW-A5VL-01 19 50827007 50827007 G C KCNC3 Silent p.L401L 0.28 TCGA-JW-A5VL-01 19 51125498 51125498 G C SYT3 3'UTR 0.28 TCGA-JW-A5VL-01 19 51295547 51295547 G A ACPT Missense_Mutation p.E200K 0.31 tolerated(0.45) probably_damaging(0.913) TCGA-JW-A5VL-01 19 51361728 51361728 G C KLK3 Missense_Mutation p.K169N 0.44 tolerated(0.07) benign(0.008) TCGA-JW-A5VL-01 19 51645837 51645837 G C SIGLEC7 Missense_Mutation p.D71H 0.33 tolerated(0.22) benign(0.003) TCGA-JW-A5VL-01 19 51670960 51670960 C G CTD-3187F8.14 Intron 0.36 TCGA-JW-A5VL-01 19 52115563 52115563 G C SIGLEC5 Missense_Mutation p.S526C 0.38 deleterious(0.05) possibly_damaging(0.627) TCGA-JW-A5VL-01 19 52376893 52376893 G C ZNF577 Nonsense_Mutation p.S117* 0.39 TCGA-JW-A5VL-01 19 52394042 52394042 C G ZNF649 Missense_Mutation p.K449N 0.48 deleterious(0.04) probably_damaging(0.945) TCGA-JW-A5VL-01 19 52443470 52443470 G A ZNF613 Silent p.L8L 0.38 TCGA-JW-A5VL-01 19 52498037 52498037 G C ZNF615 Missense_Mutation p.Q109E 0.29 tolerated(0.4) benign(0.059) TCGA-JW-A5VL-01 19 52569952 52569952 G A ZNF841 Missense_Mutation p.H395Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 19 52658907 52658907 G C ZNF836 Missense_Mutation p.Q677E 0.40 tolerated(0.28) possibly_damaging(0.866) TCGA-JW-A5VL-01 19 52659714 52659714 G A ZNF836 Missense_Mutation p.H408Y 0.45 deleterious(0) probably_damaging(0.961) TCGA-JW-A5VL-01 19 52780651 52780651 G A ZNF766 Intron 0.33 TCGA-JW-A5VL-01 19 53343425 53343425 G C ZNF468 3'UTR 0.29 TCGA-JW-A5VL-01 19 53344528 53344528 G A ZNF468 Missense_Mutation p.S340L 0.40 deleterious(0.02) possibly_damaging(0.587) TCGA-JW-A5VL-01 19 53382788 53382788 C G ZNF320 3'UTR 0.67 TCGA-JW-A5VL-01 19 53432341 53432341 C G ZNF321P Missense_Mutation p.E173Q 0.44 deleterious(0.04) benign(0.209) TCGA-JW-A5VL-01 19 53644319 53644319 G A ZNF347 Missense_Mutation p.R589W 0.35 deleterious(0.04) benign(0.013) TCGA-JW-A5VL-01 19 53669241 53669241 C G ZNF665 Missense_Mutation p.E168Q 0.50 tolerated(0.07) benign(0.059) TCGA-JW-A5VL-01 19 53792865 53792865 C T BIRC8 3'UTR 0.33 TCGA-JW-A5VL-01 19 54140205 54140205 C G DPRX Missense_Mutation p.S180C 0.40 tolerated(0.06) benign(0.237) TCGA-JW-A5VL-01 19 54314501 54314501 G A NLRP12 Missense_Mutation p.R138W 0.49 deleterious(0) probably_damaging(0.975) TCGA-JW-A5VL-01 19 54613456 54613456 G A TFPT Missense_Mutation p.R111W 0.45 deleterious(0.01) possibly_damaging(0.528) TCGA-JW-A5VL-01 19 54705008 54705008 C G RPS9 Intron 0.49 TCGA-JW-A5VL-01 19 55086320 55086320 G A LILRA2 Missense_Mutation p.E159K 0.39 tolerated(0.1) probably_damaging(0.987) TCGA-JW-A5VL-01 19 55263963 55263963 G C KIR2DL3 Missense_Mutation p.E340Q 0.35 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-JW-A5VL-01 19 55417979 55417979 G C NCR1 Missense_Mutation p.E57Q 0.27 tolerated(0.05) probably_damaging(0.986) TCGA-JW-A5VL-01 19 55508776 55508776 C T NLRP2 Nonsense_Mutation p.Q991* 0.45 TCGA-JW-A5VL-01 19 55672075 55672075 C G DNAAF3 Silent p.A395A 0.36 TCGA-JW-A5VL-01 19 55743238 55743238 G A PPP6R1 Silent p.L746L 0.52 TCGA-JW-A5VL-01 19 55879861 55879861 C T IL11 Missense_Mutation p.G86E 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-JW-A5VL-01 19 56113740 56113740 G C ZNF524 Missense_Mutation p.D88H 0.43 tolerated(0.1) probably_damaging(0.999) TCGA-JW-A5VL-01 19 56133131 56133131 C G ZNF784 Missense_Mutation p.E320Q 0.38 deleterious_low_confidence(0.01) benign(0.041) TCGA-JW-A5VL-01 19 56146896 56146896 C T ZNF581 5'UTR 0.43 TCGA-JW-A5VL-01 19 56273173 56273173 G C RFPL4A Missense_Mutation p.E3Q 0.29 tolerated(0.09) benign(0.045) TCGA-JW-A5VL-01 19 5641634 5641634 G C SAFB Missense_Mutation p.D102H 0.44 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 19 57088188 57088188 G C ZNF470 Missense_Mutation p.E131Q 0.38 tolerated(0.12) benign(0.001) TCGA-JW-A5VL-01 19 57967758 57967758 G C VN1R1 Missense_Mutation p.Q33E 0.45 tolerated_low_confidence(0.22) benign(0) TCGA-JW-A5VL-01 19 58017749 58017749 G C ZNF773 Missense_Mutation p.E96Q 0.34 tolerated(0.23) benign(0.075) TCGA-JW-A5VL-01 19 580678 580678 G C BSG Missense_Mutation p.E230Q 0.43 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 19 58117124 58117124 G A ZNF530 Silent p.Q77Q 0.47 TCGA-JW-A5VL-01 19 581522 581522 G A BSG Missense_Mutation p.E334K 0.40 deleterious(0) possibly_damaging(0.829) TCGA-JW-A5VL-01 19 5824321 5824321 G A NRTN Missense_Mutation p.A49T 0.42 tolerated(0.58) probably_damaging(0.985) TCGA-JW-A5VL-01 19 58290557 58290557 C T ZNF586 Missense_Mutation p.S201F 0.37 deleterious(0) possibly_damaging(0.889) TCGA-JW-A5VL-01 19 58400325 58400325 C T ZNF814 5'UTR 0.61 TCGA-JW-A5VL-01 19 58439073 58439073 G C ZNF418 Missense_Mutation p.S159C 0.42 deleterious(0.04) probably_damaging(0.971) TCGA-JW-A5VL-01 19 58595816 58595816 C G ZSCAN18 3'Flank 0.40 TCGA-JW-A5VL-01 19 58772823 58772823 C G ZNF544 Missense_Mutation p.S284C 0.56 deleterious(0.04) possibly_damaging(0.867) TCGA-JW-A5VL-01 19 58790390 58790390 G C ZNF8 5'UTR 0.43 TCGA-JW-A5VL-01 19 58805481 58805481 G C ZNF8 Missense_Mutation p.E103Q 0.52 tolerated(0.17) benign(0.014) TCGA-JW-A5VL-01 19 59010559 59010559 C T SLC27A5 Missense_Mutation p.E566K 0.49 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 19 59074078 59074078 G T MZF1 Missense_Mutation p.F522L 0.47 deleterious(0) probably_damaging(0.918) TCGA-JW-A5VL-01 19 613851 613851 G C HCN2 Splice_Site p.X609_splice 0.36 TCGA-JW-A5VL-01 19 6368611 6368611 G C CLPP Missense_Mutation p.D242H 0.57 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 19 6495204 6495204 C G TUBB4A Missense_Mutation p.E436Q 0.37 tolerated_low_confidence(0.26) unknown(0) TCGA-JW-A5VL-01 19 6707916 6707916 C G C3 Missense_Mutation p.D624H 0.46 deleterious(0) probably_damaging(0.929) TCGA-JW-A5VL-01 19 6751284 6751284 C T TRIP10 3'UTR 0.61 TCGA-JW-A5VL-01 19 681413 681413 C T FSTL3 Nonsense_Mutation p.R196* 0.44 TCGA-JW-A5VL-01 19 7132175 7132175 C T INSR Missense_Mutation p.D946N 0.34 tolerated(0.21) benign(0.003) TCGA-JW-A5VL-01 19 736029 736029 C G PALM Silent p.V151V 0.43 TCGA-JW-A5VL-01 19 7938348 7938348 C T CTD-3193O13.9 Missense_Mutation p.R76Q 0.38 unknown(0) TCGA-JW-A5VL-01 19 797441 797441 C G PTBP1 5'UTR 0.29 TCGA-JW-A5VL-01 19 7975365 7975365 G A MAP2K7 Missense_Mutation p.E159K 0.46 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 19 804855 804855 G A PTBP1 Silent p.L211L 0.35 TCGA-JW-A5VL-01 19 814735 814735 G C LPPR3 Missense_Mutation p.S205C 0.33 deleterious(0) probably_damaging(0.992) TCGA-JW-A5VL-01 19 815241 815241 G C LPPR3 Missense_Mutation p.I116M 0.40 deleterious(0) probably_damaging(0.965) TCGA-JW-A5VL-01 19 8532465 8532465 G C HNRNPM Missense_Mutation p.K277N 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VL-01 19 863357 863357 G A CFD 3'UTR 0.50 TCGA-JW-A5VL-01 19 9011002 9011002 G A MUC16 Silent p.F12972F 0.39 TCGA-JW-A5VL-01 19 964428 964428 C G ARID3A Missense_Mutation p.T316S 0.37 deleterious(0.03) possibly_damaging(0.729) TCGA-JW-A5VL-01 19 9771438 9771438 G A ZNF562 5'UTR 0.35 TCGA-JW-A5VL-01 1 100483336 100483336 C T SLC35A3 Silent p.I284I 0.38 TCGA-JW-A5VL-01 1 100818371 100818371 C T CDC14A 5'UTR 0.50 TCGA-JW-A5VL-01 1 1018229 1018229 C T C1orf159 3'UTR 0.47 TCGA-JW-A5VL-01 1 107867344 107867344 C T NTNG1 Silent p.F229F 0.42 TCGA-JW-A5VL-01 1 109477521 109477521 C T CLCC1 Missense_Mutation p.G476E 0.47 tolerated(1) benign(0.032) TCGA-JW-A5VL-01 1 109803758 109803758 C T CELSR2 Silent p.F1351F 0.35 TCGA-JW-A5VL-01 1 109823694 109823694 C T PSRC1 Intron 0.33 TCGA-JW-A5VL-01 1 110023685 110023685 C G SYPL2 3'UTR 0.40 TCGA-JW-A5VL-01 1 110155585 110155585 G C GNAT2 5'UTR 0.40 TCGA-JW-A5VL-01 1 1109679 1109679 G A TTLL10 5'UTR 0.41 TCGA-JW-A5VL-01 1 111147189 111147189 G A KCNA2 Silent p.L72L 0.39 TCGA-JW-A5VL-01 1 11140942 11140942 C G EXOSC10 Missense_Mutation p.E489Q 0.37 tolerated(0.07) possibly_damaging(0.465) TCGA-JW-A5VL-01 1 11141160 11141160 C G EXOSC10 Silent p.R472R 0.90 TCGA-JW-A5VL-01 1 111494681 111494681 C G LRIF1 Missense_Mutation p.E275D 0.42 tolerated(0.16) possibly_damaging(0.801) TCGA-JW-A5VL-01 1 11182125 11182125 G A MTOR Missense_Mutation p.P2241S 0.32 tolerated(0.1) probably_damaging(0.977) TCGA-JW-A5VL-01 1 11182129 11182129 C A MTOR Missense_Mutation p.W2239C 0.32 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 1 111825686 111825686 C T CHIAP2 RNA 0.46 TCGA-JW-A5VL-01 1 11184573 11184573 G A MTOR Missense_Mutation p.S2215F 0.36 deleterious(0) possibly_damaging(0.69) TCGA-JW-A5VL-01 1 11184661 11184661 G C MTOR Missense_Mutation p.L2186V 0.30 deleterious(0.04) possibly_damaging(0.833) TCGA-JW-A5VL-01 1 112303677 112303677 C T DDX20 Nonsense_Mutation p.Q298* 0.28 TCGA-JW-A5VL-01 1 11249534 11249534 G A ANGPTL7 5'UTR 0.67 TCGA-JW-A5VL-01 1 11303244 11303244 C G MTOR Missense_Mutation p.E447Q 0.36 tolerated(0.56) benign(0.068) TCGA-JW-A5VL-01 1 113213751 113213751 G A CAPZA1 3'UTR 0.18 TCGA-JW-A5VL-01 1 113240659 113240659 G A MOV10 Missense_Mutation p.E748K 0.49 deleterious(0.01) benign(0.064) TCGA-JW-A5VL-01 1 113616103 113616103 C T LRIG2 Silent p.L25L 0.41 TCGA-JW-A5VL-01 1 1139439 1139439 C T TNFRSF18 Intron 0.35 TCGA-JW-A5VL-01 1 1140971 1140971 C G TNFRSF18 Intron 0.75 TCGA-JW-A5VL-01 1 114165542 114165542 G C MAGI3 Missense_Mutation p.R429T 0.25 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 1 115220031 115220031 G C AMPD1 Missense_Mutation p.F476L 0.35 tolerated(0.14) probably_damaging(0.999) TCGA-JW-A5VL-01 1 115292556 115292556 G C CSDE1 5'UTR 0.38 TCGA-JW-A5VL-01 1 116235340 116235340 G A VANGL1 3'UTR 0.52 TCGA-JW-A5VL-01 1 116916774 116916774 G C ATP1A1 5'UTR 0.39 TCGA-JW-A5VL-01 1 117118042 117118042 C T IGSF3 3'UTR 0.43 TCGA-JW-A5VL-01 1 117487580 117487580 C T PTGFRN Missense_Mutation p.S233L 0.55 tolerated(0.69) benign(0.044) TCGA-JW-A5VL-01 1 120056474 120056474 G C HSD3B1 Missense_Mutation p.E110Q 0.48 deleterious(0.02) benign(0.259) TCGA-JW-A5VL-01 1 12446241 12446241 C T VPS13D Intron 0.41 TCGA-JW-A5VL-01 1 1273930 1273930 G C DVL1 Silent p.L412L 0.25 TCGA-JW-A5VL-01 1 1335601 1335601 C T RP4-758J18.2 Nonsense_Mutation p.R68* 0.76 TCGA-JW-A5VL-01 1 1398013 1398013 G A ATAD3C Silent p.R338R 0.46 TCGA-JW-A5VL-01 1 144866706 144866706 C G PDE4DIP Missense_Mutation p.E1846Q 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-JW-A5VL-01 1 144892111 144892111 C G PDE4DIP Intron 0.08 TCGA-JW-A5VL-01 1 145039751 145039751 G A RN7SKP88 5'Flank 0.05 TCGA-JW-A5VL-01 1 145076016 145076016 C T PDE4DIP 5'UTR 0.52 TCGA-JW-A5VL-01 1 145209265 145209265 G A RP11-458D21.5 5'UTR 0.13 TCGA-JW-A5VL-01 1 145596999 145596999 C G POLR3C Missense_Mutation p.E376Q 0.40 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VL-01 1 146672800 146672800 G A FMO5 Nonsense_Mutation p.Q373* 0.42 TCGA-JW-A5VL-01 1 146672888 146672888 G C FMO5 Silent p.V343V 0.31 TCGA-JW-A5VL-01 1 148951275 148951275 G A RP11-14N7.2 RNA 0.14 TCGA-JW-A5VL-01 1 149857834 149857834 G A HIST2H2BE Silent p.V119V 0.46 TCGA-JW-A5VL-01 1 150551522 150551522 G C MCL1 Missense_Mutation p.S162W 0.41 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 1 150974870 150974870 G C FAM63A Nonsense_Mutation p.S123* 0.45 TCGA-JW-A5VL-01 1 151171429 151171429 G C PIP5K1A 5'UTR 0.36 TCGA-JW-A5VL-01 1 151171439 151171439 G C PIP5K1A 5'UTR 0.44 TCGA-JW-A5VL-01 1 151536388 151536388 G C TUFT1 Missense_Mutation p.L82F 0.39 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 1 151670143 151670143 G A SNX27 3'UTR 0.42 TCGA-JW-A5VL-01 1 151739351 151739351 C T OAZ3 Intron 0.50 TCGA-JW-A5VL-01 1 151773446 151773446 C G LINGO4 Missense_Mutation p.G579R 0.38 deleterious(0.01) probably_damaging(0.921) TCGA-JW-A5VL-01 1 151780038 151780038 G C RORC Silent p.L489L 0.35 TCGA-JW-A5VL-01 1 152082063 152082063 C T TCHH Silent p.R1210R 0.38 TCGA-JW-A5VL-01 1 152083115 152083115 G C TCHH Missense_Mutation p.Q860E 0.40 unknown(0) TCGA-JW-A5VL-01 1 152279231 152279231 C T FLG Missense_Mutation p.G2711R 0.14 benign(0.014) TCGA-JW-A5VL-01 1 152279801 152279801 C T FLG Missense_Mutation p.E2521K 0.29 possibly_damaging(0.623) TCGA-JW-A5VL-01 1 152327330 152327330 C T FLG2 Missense_Mutation p.E978K 0.41 unknown(0) TCGA-JW-A5VL-01 1 152957716 152957716 C T SPRR1A Nonsense_Mutation p.Q4* 0.46 TCGA-JW-A5VL-01 1 153389008 153389008 C T S100A7A 5'UTR 0.30 TCGA-JW-A5VL-01 1 15361347 15361347 G A KAZN Missense_Mutation p.R174Q 0.24 deleterious(0) benign(0.14) TCGA-JW-A5VL-01 1 153701255 153701255 G C INTS3 Missense_Mutation p.E49Q 0.38 deleterious(0.01) benign(0.249) TCGA-JW-A5VL-01 1 154245112 154245112 C G HAX1 5'UTR 0.43 TCGA-JW-A5VL-01 1 154306644 154306644 G A ATP8B2 Nonsense_Mutation p.W250* 0.46 TCGA-JW-A5VL-01 1 154744744 154744744 G A KCNN3 Silent p.F385F 0.46 TCGA-JW-A5VL-01 1 154935473 154935473 G C SHC1 3'UTR 0.42 TCGA-JW-A5VL-01 1 155112441 155112441 G A DPM3 Silent p.F122F 0.31 TCGA-JW-A5VL-01 1 155167871 155167871 C T THBS3 Missense_Mutation p.D739N 0.68 deleterious(0) possibly_damaging(0.788) TCGA-JW-A5VL-01 1 155230175 155230175 C G SCAMP3 Missense_Mutation p.E112Q 0.49 deleterious(0) possibly_damaging(0.703) TCGA-JW-A5VL-01 1 155263012 155263012 G C PKLR Missense_Mutation p.F464L 0.44 tolerated(0.38) possibly_damaging(0.467) TCGA-JW-A5VL-01 1 155296726 155296726 C G RUSC1 Silent p.V739V 0.36 TCGA-JW-A5VL-01 1 155707959 155707959 G C DAP3 Missense_Mutation p.E375Q 0.42 deleterious(0.02) possibly_damaging(0.653) TCGA-JW-A5VL-01 1 155823271 155823271 G A GON4L Nonsense_Mutation p.Q101* 0.32 TCGA-JW-A5VL-01 1 155823273 155823273 G A GON4L Missense_Mutation p.S100F 0.32 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-JW-A5VL-01 1 155829491 155829491 G T SYT11 5'UTR 0.35 TCGA-JW-A5VL-01 1 155851212 155851212 C G SYT11 Silent p.V403V 0.47 TCGA-JW-A5VL-01 1 155851247 155851247 G A SYT11 Missense_Mutation p.C415Y 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-JW-A5VL-01 1 155851251 155851251 G A SYT11 Silent p.E416E 0.33 TCGA-JW-A5VL-01 1 156533585 156533585 G A IQGAP3 Nonsense_Mutation p.Q157* 0.37 TCGA-JW-A5VL-01 1 156563345 156563345 C G APOA1BP Nonsense_Mutation p.S221* 0.50 TCGA-JW-A5VL-01 1 156640544 156640544 C G NES Missense_Mutation p.E1146Q 0.30 deleterious(0) possibly_damaging(0.886) TCGA-JW-A5VL-01 1 156642887 156642887 C G NES Missense_Mutation p.E365Q 0.50 tolerated(0.27) benign(0.045) TCGA-JW-A5VL-01 1 156706500 156706500 G T RRNAD1 Missense_Mutation p.M461I 0.37 tolerated_low_confidence(0.2) benign(0) TCGA-JW-A5VL-01 1 156816359 156816359 G A INSRR Missense_Mutation p.H588Y 0.41 tolerated(1) possibly_damaging(0.718) TCGA-JW-A5VL-01 1 156915901 156915901 G C ARHGEF11 Missense_Mutation p.I916M 0.44 deleterious(0.02) benign(0.261) TCGA-JW-A5VL-01 1 15708573 15708573 G C FHAD1 Missense_Mutation p.E571Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 1 157490282 157490282 G A FCRL5 Silent p.L857L 0.57 TCGA-JW-A5VL-01 1 157512838 157512838 C A FCRL5 Nonsense_Mutation p.E312* 0.42 TCGA-JW-A5VL-01 1 157739743 157739743 C T FCRL2 Missense_Mutation p.E170K 0.41 tolerated(0.13) possibly_damaging(0.566) TCGA-JW-A5VL-01 1 158576330 158576330 G A OR10Z1 Silent p.L34L 0.39 TCGA-JW-A5VL-01 1 158724728 158724728 C G OR6K6 Silent p.L41L 0.54 TCGA-JW-A5VL-01 1 159002440 159002440 C T IFI16 Nonsense_Mutation p.Q430* 0.29 TCGA-JW-A5VL-01 1 159779272 159779272 G A FCRL6 Missense_Mutation p.E229K 0.49 deleterious(0.01) probably_damaging(0.994) TCGA-JW-A5VL-01 1 159779317 159779317 G A FCRL6 Missense_Mutation p.D244N 0.38 tolerated(0.61) benign(0.018) TCGA-JW-A5VL-01 1 159799975 159799975 G C SLAMF8 Missense_Mutation p.K120N 0.49 deleterious(0.02) benign(0.044) TCGA-JW-A5VL-01 1 160054516 160054516 C G KCNJ9 Missense_Mutation p.F232L 0.27 deleterious(0.04) possibly_damaging(0.483) TCGA-JW-A5VL-01 1 160341793 160341793 C T NHLH1 3'UTR 0.50 TCGA-JW-A5VL-01 1 160393995 160393995 C T VANGL2 Silent p.T409T 0.44 TCGA-JW-A5VL-01 1 160604405 160604405 G C SLAMF1 Nonsense_Mutation p.S233* 0.54 TCGA-JW-A5VL-01 1 160616718 160616718 G A SLAMF1 Silent p.L6L 0.49 TCGA-JW-A5VL-01 1 161141164 161141164 G A B4GALT3 3'UTR 0.28 TCGA-JW-A5VL-01 1 161199825 161199825 C G TOMM40L 3'UTR 0.35 TCGA-JW-A5VL-01 1 161335330 161335336 CAGGACA - C1orf192 Frame_Shift_Del p.C110Kfs*3 0.22 TCGA-JW-A5VL-01 1 16254826 16254826 C A SPEN Nonsense_Mutation p.Y697* 0.29 TCGA-JW-A5VL-01 1 16255242 16255242 C G SPEN Nonsense_Mutation p.S836* 0.40 TCGA-JW-A5VL-01 1 16256108 16256108 G C SPEN Missense_Mutation p.E1125Q 0.54 probably_damaging(0.993) TCGA-JW-A5VL-01 1 16256255 16256255 G A SPEN Missense_Mutation p.E1174K 0.38 probably_damaging(0.991) TCGA-JW-A5VL-01 1 16256303 16256303 G C SPEN Missense_Mutation p.E1190Q 0.31 probably_damaging(0.993) TCGA-JW-A5VL-01 1 16256501 16256501 G A SPEN Missense_Mutation p.E1256K 0.40 probably_damaging(0.991) TCGA-JW-A5VL-01 1 16256546 16256546 G T SPEN Nonsense_Mutation p.E1271* 0.54 TCGA-JW-A5VL-01 1 16256967 16256967 G T SPEN Missense_Mutation p.R1411I 0.52 probably_damaging(0.996) TCGA-JW-A5VL-01 1 16256972 16256972 G A SPEN Missense_Mutation p.D1413N 0.50 benign(0.219) TCGA-JW-A5VL-01 1 16257044 16257044 G C SPEN Missense_Mutation p.D1437H 0.48 probably_damaging(0.999) TCGA-JW-A5VL-01 1 16257220 16257220 G A SPEN Missense_Mutation p.M1495I 0.36 benign(0.03) TCGA-JW-A5VL-01 1 16257260 16257260 G A SPEN Missense_Mutation p.D1509N 0.42 possibly_damaging(0.765) TCGA-JW-A5VL-01 1 16257263 16257263 G A SPEN Missense_Mutation p.D1510N 0.43 possibly_damaging(0.765) TCGA-JW-A5VL-01 1 16257467 16257467 G C SPEN Missense_Mutation p.E1578Q 0.64 probably_damaging(0.993) TCGA-JW-A5VL-01 1 16359706 16359706 C G CLCNKA Missense_Mutation p.F657L 0.88 tolerated(0.05) benign(0.088) TCGA-JW-A5VL-01 1 16384780 16384780 G A FAM131C 3'UTR 0.48 TCGA-JW-A5VL-01 1 16458615 16458615 C G EPHA2 Missense_Mutation p.D757H 0.78 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 1 16464585 16464585 C T EPHA2 Missense_Mutation p.D359N 0.47 deleterious(0) benign(0.064) TCGA-JW-A5VL-01 1 16558560 16558560 C G RSG1 Missense_Mutation p.E254Q 0.80 tolerated_low_confidence(0.28) benign(0.005) TCGA-JW-A5VL-01 1 167097351 167097351 G C DUSP27 Missense_Mutation p.E995Q 0.44 tolerated(0.16) benign(0.062) TCGA-JW-A5VL-01 1 16891327 16891327 C T NBPF1 Missense_Mutation p.E1051K 0.02 deleterious_low_confidence(0.01) benign(0.136) TCGA-JW-A5VL-01 1 171107239 171107239 G C FMO6P 5'Flank 0.50 TCGA-JW-A5VL-01 1 171454842 171454842 C G PRRC2C 5'UTR 0.62 TCGA-JW-A5VL-01 1 171605066 171605066 C T MYOC Silent p.%3D 0.43 TCGA-JW-A5VL-01 1 171621560 171621560 C G MYOC Missense_Mutation p.Q64H 0.39 tolerated(0.06) benign(0.336) TCGA-JW-A5VL-01 1 17312722 17312722 C G ATP13A2 Silent p.L1179L 0.37 TCGA-JW-A5VL-01 1 17322357 17322357 G C ATP13A2 Intron 0.49 TCGA-JW-A5VL-01 1 17331220 17331220 G C ATP13A2 Silent p.L148L 0.05 TCGA-JW-A5VL-01 1 173839612 173839612 C G ZBTB37 Silent p.L83L 0.25 TCGA-JW-A5VL-01 1 17395384 17395384 C T PADI2 3'UTR 0.36 TCGA-JW-A5VL-01 1 173961967 173961967 C G RC3H1 Missense_Mutation p.D53H 0.43 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 1 17409138 17409138 C T PADI2 Missense_Mutation p.E354K 0.19 deleterious(0) probably_damaging(0.974) TCGA-JW-A5VL-01 1 17409144 17409144 C A PADI2 Nonsense_Mutation p.E352* 0.24 TCGA-JW-A5VL-01 1 175996801 175996801 C G RFWD2 Missense_Mutation p.D546H 0.32 deleterious(0) possibly_damaging(0.885) TCGA-JW-A5VL-01 1 179526215 179526215 G C NPHS2 Missense_Mutation p.R229G 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-JW-A5VL-01 1 179587787 179587787 C G TDRD5 Missense_Mutation p.I295M 0.45 deleterious(0) possibly_damaging(0.851) TCGA-JW-A5VL-01 1 179782210 179782210 G C FAM163A Splice_Site 0.36 TCGA-JW-A5VL-01 1 179993679 179993679 C G CEP350 Missense_Mutation p.S1171C 0.29 probably_damaging(0.933) TCGA-JW-A5VL-01 1 180843068 180843068 G A XPR1 Missense_Mutation p.E600K 0.43 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 1 181058015 181058015 G C IER5 5'UTR 0.50 TCGA-JW-A5VL-01 1 183177098 183177098 C G LAMC2 Silent p.L54L 0.37 TCGA-JW-A5VL-01 1 184592998 184592998 C T C1orf21 3'UTR 0.46 TCGA-JW-A5VL-01 1 185069960 185069960 C G RNF2 3'UTR 0.50 TCGA-JW-A5VL-01 1 192127819 192127819 G C RGS18 Missense_Mutation p.E18Q 0.68 tolerated(0.05) possibly_damaging(0.685) TCGA-JW-A5VL-01 1 19401254 19401254 G A UBR4 3'UTR 0.43 TCGA-JW-A5VL-01 1 19585378 19585378 C G MRTO4 3'UTR 0.41 TCGA-JW-A5VL-01 1 196196859 196196859 C T KCNT2 3'Flank 0.25 TCGA-JW-A5VL-01 1 196964876 196964876 C G CFHR5 Missense_Mutation p.Q213E 0.44 tolerated(0.46) benign(0.187) TCGA-JW-A5VL-01 1 19923511 19923511 G A MINOS1-NBL1 5'UTR 0.52 TCGA-JW-A5VL-01 1 200635689 200635689 G A DDX59 Silent p.C60C 0.55 TCGA-JW-A5VL-01 1 200818904 200818904 C T CAMSAP2 Missense_Mutation p.R1003W 0.45 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 1 200946423 200946423 C T KIF21B Silent p.Q1414Q 0.35 TCGA-JW-A5VL-01 1 201779862 201779862 C T NAV1 Silent p.F1591F 0.30 TCGA-JW-A5VL-01 1 201791772 201791772 C T NAV1 3'UTR 0.38 TCGA-JW-A5VL-01 1 201791989 201791989 G C NAV1 3'UTR 0.57 TCGA-JW-A5VL-01 1 201973512 201973512 C G RNPEP Missense_Mutation p.P561R 0.40 deleterious(0) possibly_damaging(0.892) TCGA-JW-A5VL-01 1 201983060 201983060 C T ELF3 Silent p.F303F 0.40 TCGA-JW-A5VL-01 1 202697111 202697111 G A KDM5B 3'UTR 0.39 TCGA-JW-A5VL-01 1 203711074 203711074 G C ATP2B4 3'UTR 0.44 TCGA-JW-A5VL-01 1 203734616 203734616 G C LAX1 5'UTR 0.48 TCGA-JW-A5VL-01 1 203743702 203743702 G C LAX1 Missense_Mutation p.E364Q 0.45 deleterious(0.01) probably_damaging(0.986) TCGA-JW-A5VL-01 1 204086775 204086775 C G SOX13 Missense_Mutation p.L239V 0.35 deleterious(0) benign(0.234) TCGA-JW-A5VL-01 1 204374007 204374007 C G PPP1R15B 3'UTR 0.35 TCGA-JW-A5VL-01 1 20471149 20471149 C G PLA2G2F Missense_Mutation p.H131D 0.60 deleterious(0) possibly_damaging(0.622) TCGA-JW-A5VL-01 1 205057745 205057745 C T RBBP5 3'UTR 0.42 TCGA-JW-A5VL-01 1 205112903 205112903 G C DSTYK 3'UTR 0.39 TCGA-JW-A5VL-01 1 205501518 205501518 C T CDK18 3'Flank 0.27 TCGA-JW-A5VL-01 1 207102312 207102312 C G PIGR 3'UTR 0.30 TCGA-JW-A5VL-01 1 207194509 207194509 G C C1orf116 3'UTR 0.49 TCGA-JW-A5VL-01 1 207200937 207200937 C T C1orf116 Missense_Mutation p.E3K 0.45 tolerated(0.4) benign(0.044) TCGA-JW-A5VL-01 1 209849101 209849101 G A G0S2 Silent p.V24V 0.38 TCGA-JW-A5VL-01 1 209963024 209963024 G C IRF6 Silent p.L389L 0.40 TCGA-JW-A5VL-01 1 210010194 210010194 G A DIEXF Missense_Mutation p.E234K 0.40 tolerated(0.8) benign(0.005) TCGA-JW-A5VL-01 1 21048338 21048338 G C SH2D5 Missense_Mutation p.L407V 0.45 tolerated_low_confidence(0.06) probably_damaging(0.994) TCGA-JW-A5VL-01 1 21070881 21070881 C T HP1BP3 3'UTR 0.36 TCGA-JW-A5VL-01 1 210856728 210856728 G A KCNH1 Silent p.L955L 0.41 TCGA-JW-A5VL-01 1 212860190 212860190 C G BATF3 Missense_Mutation p.M109I 0.47 tolerated(0.16) benign(0.006) TCGA-JW-A5VL-01 1 213125052 213125052 C T VASH2 Silent p.F56F 0.45 TCGA-JW-A5VL-01 1 214813659 214813659 G A CENPF Missense_Mutation p.E660K 0.56 probably_damaging(0.994) TCGA-JW-A5VL-01 1 214814304 214814304 C G CENPF Missense_Mutation p.Q875E 0.55 possibly_damaging(0.848) TCGA-JW-A5VL-01 1 215259917 215259917 C G KCNK2 Missense_Mutation p.Q85E 0.46 tolerated(0.07) possibly_damaging(0.868) TCGA-JW-A5VL-01 1 215953249 215953249 G C USH2A Missense_Mutation p.I3625M 0.44 benign(0.297) TCGA-JW-A5VL-01 1 216497640 216497640 G C USH2A Missense_Mutation p.Q400E 0.44 benign(0.168) TCGA-JW-A5VL-01 1 220219795 220219795 G A EPRS 5'UTR 0.40 TCGA-JW-A5VL-01 1 220219805 220219805 G A EPRS 5'UTR 0.39 TCGA-JW-A5VL-01 1 220311328 220311328 C T IARS2 Silent p.F706F 0.37 TCGA-JW-A5VL-01 1 22056230 22056230 G C USP48 Missense_Mutation p.Q423E 0.42 tolerated(1) benign(0) TCGA-JW-A5VL-01 1 22056234 22056234 T C USP48 Silent p.Q421Q 0.43 TCGA-JW-A5VL-01 1 22178679 22178679 C T HSPG2 Missense_Mutation p.E2258K 0.37 benign(0.407) TCGA-JW-A5VL-01 1 22181343 22181343 G C HSPG2 Nonsense_Mutation p.S2044* 0.42 TCGA-JW-A5VL-01 1 223408322 223408322 G C SUSD4 Intron 0.36 TCGA-JW-A5VL-01 1 226589952 226589952 C T PARP1 Silent p.Q83Q 0.30 TCGA-JW-A5VL-01 1 227921486 227921486 C G SNAP47 5'Flank 0.31 TCGA-JW-A5VL-01 1 228289607 228289607 G C C1orf35 Intron 0.39 TCGA-JW-A5VL-01 1 228474502 228474502 C T OBSCN Silent p.L3531L 0.43 TCGA-JW-A5VL-01 1 228879058 228879058 C G RHOU Silent p.L116L 0.43 TCGA-JW-A5VL-01 1 233388160 233388160 C G PCNXL2 Missense_Mutation p.E690Q 0.32 deleterious(0) possibly_damaging(0.616) TCGA-JW-A5VL-01 1 233394536 233394536 G C PCNXL2 Missense_Mutation p.L358V 0.32 tolerated_low_confidence(0.1) benign(0.025) TCGA-JW-A5VL-01 1 23519981 23519981 G A HTR1D Silent p.L244L 0.36 TCGA-JW-A5VL-01 1 23648042 23648042 C T HNRNPR Missense_Mutation p.E264K 0.46 tolerated(0.07) benign(0.371) TCGA-JW-A5VL-01 1 23650114 23650114 G C HNRNPR Missense_Mutation p.Q204E 0.56 tolerated(0.85) possibly_damaging(0.885) TCGA-JW-A5VL-01 1 236708213 236708213 G C LGALS8 Missense_Mutation p.E310Q 0.43 deleterious(0.01) possibly_damaging(0.652) TCGA-JW-A5VL-01 1 236750791 236750791 C G HEATR1 Splice_Site p.X543_splice 0.27 TCGA-JW-A5VL-01 1 237617847 237617847 G A RYR2 Silent p.K483K 0.41 TCGA-JW-A5VL-01 1 237947564 237947564 G A RYR2 Silent p.E4184E 0.43 TCGA-JW-A5VL-01 1 240072203 240072203 C G CHRM3 Silent p.V484V 0.47 TCGA-JW-A5VL-01 1 242162308 242162308 C T MAP1LC3C Translation_Start_Site p.M1? 0.33 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 1 243507589 243507589 G C SDCCAG8 Missense_Mutation p.E477Q 0.33 deleterious(0.04) benign(0.248) TCGA-JW-A5VL-01 1 2451280 2451280 G A PANK4 Silent p.L271L 0.86 TCGA-JW-A5VL-01 1 245850330 245850330 G A KIF26B Missense_Mutation p.D1349N 0.47 deleterious(0.04) unknown(0) TCGA-JW-A5VL-01 1 248512656 248512656 G C OR14C36 Missense_Mutation p.E194Q 0.39 tolerated(0.09) benign(0.14) TCGA-JW-A5VL-01 1 248813928 248813928 C T OR2T27 Silent p.V86V 0.24 TCGA-JW-A5VL-01 1 2493180 2493180 C G TNFRSF14 Nonsense_Mutation p.S207* 0.37 TCGA-JW-A5VL-01 1 26098186 26098186 G C MAN1C1 Missense_Mutation p.E394Q 0.37 deleterious(0.01) probably_damaging(0.993) TCGA-JW-A5VL-01 1 26515969 26515969 C G CNKSR1 Missense_Mutation p.S691C 0.60 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-JW-A5VL-01 1 27100297 27100297 G A ARID1A Missense_Mutation p.D1337N 0.30 unknown(0) TCGA-JW-A5VL-01 1 27223845 27223845 C G GPATCH3 Missense_Mutation p.E275Q 0.35 tolerated(0.36) benign(0.017) TCGA-JW-A5VL-01 1 27622829 27622829 G C WDTC1 Missense_Mutation p.D296H 0.36 deleterious(0) probably_damaging(0.992) TCGA-JW-A5VL-01 1 27709027 27709027 G A CD164L2 Silent p.S73S 0.47 TCGA-JW-A5VL-01 1 27861137 27861137 C T AHDC1 3'UTR 0.23 TCGA-JW-A5VL-01 1 28178052 28178052 C T PPP1R8 3'UTR 0.42 TCGA-JW-A5VL-01 1 29023524 29023524 C G GMEB1 Missense_Mutation p.L186V 0.40 tolerated(0.05) probably_damaging(0.978) TCGA-JW-A5VL-01 1 29064809 29064809 G A YTHDF2 Missense_Mutation p.D31N 0.83 tolerated(0.11) possibly_damaging(0.838) TCGA-JW-A5VL-01 1 29585841 29585841 C T PTPRU Silent p.L182L 0.44 TCGA-JW-A5VL-01 1 31465384 31465384 G C PUM1 Missense_Mutation p.F337L 0.35 tolerated_low_confidence(0.08) benign(0.059) TCGA-JW-A5VL-01 1 31478834 31478834 G A PUM1 Nonsense_Mutation p.Q196* 0.39 TCGA-JW-A5VL-01 1 31897655 31897655 C G SERINC2 Missense_Mutation p.F118L 0.50 tolerated(0.41) benign(0.168) TCGA-JW-A5VL-01 1 32098193 32098193 G C PEF1 Missense_Mutation p.F176L 0.44 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 1 32203073 32203073 G C BAI2 Missense_Mutation p.S979C 0.42 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 1 32694789 32694789 G T EIF3I Missense_Mutation p.R261S 0.19 tolerated(0.15) benign(0.018) TCGA-JW-A5VL-01 1 33145259 33145259 G C RBBP4 Missense_Mutation p.D411H 0.43 deleterious(0.01) possibly_damaging(0.655) TCGA-JW-A5VL-01 1 33239594 33239594 C G KIAA1522 3'UTR 0.38 TCGA-JW-A5VL-01 1 33293677 33293677 G C S100PBP Missense_Mutation p.K305N 0.43 deleterious(0) possibly_damaging(0.888) TCGA-JW-A5VL-01 1 33613039 33613039 G A TRIM62 Silent p.I389I 0.81 TCGA-JW-A5VL-01 1 33838043 33838043 G C PHC2 Missense_Mutation p.I60M 0.85 deleterious(0.01) probably_damaging(0.998) TCGA-JW-A5VL-01 1 3392570 3392570 G C ARHGEF16 Missense_Mutation p.E473Q 0.32 deleterious(0.03) benign(0.356) TCGA-JW-A5VL-01 1 35321430 35321430 G C SMIM12 Nonsense_Mutation p.S50* 0.39 TCGA-JW-A5VL-01 1 35650092 35650092 C G SFPQ Missense_Mutation p.E697Q 0.47 deleterious(0.01) possibly_damaging(0.727) TCGA-JW-A5VL-01 1 35652673 35652673 C T SFPQ Missense_Mutation p.G639S 0.59 deleterious(0.03) probably_damaging(0.934) TCGA-JW-A5VL-01 1 36752157 36752157 C G THRAP3 Nonsense_Mutation p.S109* 0.46 TCGA-JW-A5VL-01 1 37941279 37941279 C A ZC3H12A Nonsense_Mutation p.S61* 0.50 TCGA-JW-A5VL-01 1 38158356 38158356 G C CDCA8 5'UTR 0.52 TCGA-JW-A5VL-01 1 38409491 38409491 G C INPP5B Missense_Mutation p.S76W 0.19 deleterious(0) probably_damaging(0.979) TCGA-JW-A5VL-01 1 39776539 39776539 C T MACF1 Missense_Mutation p.S1051L 0.36 possibly_damaging(0.857) TCGA-JW-A5VL-01 1 39952335 39952335 G A MACF1 3'UTR 0.91 TCGA-JW-A5VL-01 1 42642466 42642466 C T FOXJ3 3'UTR 0.47 TCGA-JW-A5VL-01 1 43395578 43395578 G C SLC2A1 Silent p.L215L 0.38 TCGA-JW-A5VL-01 1 43675438 43675438 G C WDR65 Missense_Mutation p.D594H 0.40 deleterious(0) possibly_damaging(0.885) TCGA-JW-A5VL-01 1 43829599 43829599 G A ELOVL1 Silent p.V276V 0.40 TCGA-JW-A5VL-01 1 44019601 44019601 C G PTPRF Nonsense_Mutation p.S123* 0.39 TCGA-JW-A5VL-01 1 44057179 44057179 G A PTPRF Missense_Mutation p.D496N 0.57 deleterious(0.03) benign(0.176) TCGA-JW-A5VL-01 1 44878382 44878382 C G RNF220 Missense_Mutation p.R205G 0.38 deleterious(0.05) possibly_damaging(0.549) TCGA-JW-A5VL-01 1 45101497 45101497 C G RNF220 Intron 0.50 TCGA-JW-A5VL-01 1 45163817 45163817 G A C1orf228 Missense_Mutation p.E120K 0.13 tolerated(0.08) benign(0.135) TCGA-JW-A5VL-01 1 45468859 45468859 G C HECTD3 3'UTR 0.48 TCGA-JW-A5VL-01 1 45474374 45474374 C T HECTD3 Splice_Site p.X358_splice 0.28 TCGA-JW-A5VL-01 1 45524287 45524287 C G ZSWIM5 Missense_Mutation p.E416Q 0.49 tolerated(0.48) unknown(0) TCGA-JW-A5VL-01 1 45671717 45671717 G A ZSWIM5 Silent p.F102F 0.41 TCGA-JW-A5VL-01 1 46496304 46496304 C G MAST2 Nonsense_Mutation p.S860* 0.39 TCGA-JW-A5VL-01 1 46496373 46496373 C G MAST2 Nonsense_Mutation p.S883* 0.36 TCGA-JW-A5VL-01 1 46809451 46809451 C T NSUN4 Intron 0.41 TCGA-JW-A5VL-01 1 47606478 47606478 G C CYP4A22 Silent p.R74R 0.36 TCGA-JW-A5VL-01 1 52882338 52882338 G A PRPF38A Silent p.K305K 0.56 TCGA-JW-A5VL-01 1 52882504 52882504 G A PRPF38A 3'UTR 0.46 TCGA-JW-A5VL-01 1 53323227 53323227 G C ZYG11A Missense_Mutation p.D272H 0.90 deleterious(0.04) benign(0.136) TCGA-JW-A5VL-01 1 53537219 53537219 G C PODN Missense_Mutation p.E157Q 0.50 tolerated(0.57) benign(0.236) TCGA-JW-A5VL-01 1 53600054 53600054 C T SLC1A7 Silent p.L61L 0.50 TCGA-JW-A5VL-01 1 53675983 53675983 G C CPT2 Missense_Mutation p.D213H 0.53 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 1 54059922 54059922 C T GLIS1 Silent p.K218K 0.42 TCGA-JW-A5VL-01 1 54665732 54665732 C T MRPL37 5'Flank 0.38 TCGA-JW-A5VL-01 1 55197170 55197170 C T TTC4 Silent p.I231I 0.52 TCGA-JW-A5VL-01 1 56977718 56977718 G C PPAP2B Nonsense_Mutation p.S247* 0.33 TCGA-JW-A5VL-01 1 56990200 56990200 G C PPAP2B Missense_Mutation p.I108M 0.21 deleterious(0) probably_damaging(0.957) TCGA-JW-A5VL-01 1 59247283 59247283 C G JUN 3'UTR 0.29 TCGA-JW-A5VL-01 1 59248413 59248413 G A JUN Silent p.F110F 0.49 TCGA-JW-A5VL-01 1 62976295 62976295 C G DOCK7 Missense_Mutation p.W1413C 0.42 deleterious(0) possibly_damaging(0.878) TCGA-JW-A5VL-01 1 63894748 63894748 G A ALG6 Missense_Mutation p.R426K 0.91 tolerated(0.9) benign(0.009) TCGA-JW-A5VL-01 1 63894749 63894749 G A ALG6 Silent p.R426R 0.91 TCGA-JW-A5VL-01 1 6409872 6409872 G C ACOT7 Missense_Mutation p.I76M 0.38 deleterious(0) probably_damaging(0.988) TCGA-JW-A5VL-01 1 6511968 6511968 C T ESPN Nonsense_Mutation p.Q713* 0.32 TCGA-JW-A5VL-01 1 66036336 66036336 C G LEPR Nonsense_Mutation p.S74* 0.52 TCGA-JW-A5VL-01 1 67243159 67243159 C G TCTEX1D1 3'UTR 0.32 TCGA-JW-A5VL-01 1 67396007 67396007 C G MIER1 Intron 0.64 TCGA-JW-A5VL-01 1 71437402 71437402 C T PTGER3 Intron 0.35 TCGA-JW-A5VL-01 1 76200550 76200550 G C ACADM Missense_Mutation p.L158F 0.49 tolerated(0.1) benign(0.05) TCGA-JW-A5VL-01 1 77528829 77528829 C T ST6GALNAC5 Nonsense_Mutation p.Q317* 0.34 TCGA-JW-A5VL-01 1 77627295 77627295 C G PIGK Missense_Mutation p.G229A 0.48 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VL-01 1 7829305 7829305 G C CAMTA1 3'UTR 0.47 TCGA-JW-A5VL-01 1 79115876 79115876 G C IFI44 5'UTR 0.44 TCGA-JW-A5VL-01 1 8072126 8072126 C G ERRFI1 3'UTR 0.54 TCGA-JW-A5VL-01 1 85016205 85016205 G C CTBS 3'UTR 0.38 TCGA-JW-A5VL-01 1 85560159 85560159 G C WDR63 Missense_Mutation p.R365T 0.32 deleterious(0) probably_damaging(0.969) TCGA-JW-A5VL-01 1 85656076 85656076 C T SYDE2 Missense_Mutation p.E369K 0.31 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 1 8568728 8568728 C T RERE Silent p.L279L 0.39 TCGA-JW-A5VL-01 1 86822207 86822207 G A ODF2L Missense_Mutation p.H480Y 0.33 deleterious(0.03) benign(0.361) TCGA-JW-A5VL-01 1 894355 894355 C G NOC2L Missense_Mutation p.E45Q 0.50 tolerated(0.53) benign(0.118) TCGA-JW-A5VL-01 1 89448842 89448842 C G RBMXL1 Missense_Mutation p.R223T 0.38 deleterious(0) possibly_damaging(0.461) TCGA-JW-A5VL-01 1 89846004 89846004 C T GBP6 Missense_Mutation p.P229S 0.06 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VL-01 1 9034807 9034807 G A CA6 3'Flank 0.19 TCGA-JW-A5VL-01 1 915302 915302 C T C1orf170 Missense_Mutation p.D276N 0.41 tolerated(0.1) benign(0.084) TCGA-JW-A5VL-01 1 934943 934943 C T HES4 Silent p.V111V 0.39 TCGA-JW-A5VL-01 1 93621908 93621908 C G TMED5 Missense_Mutation p.K140N 0.39 tolerated(0.18) possibly_damaging(0.532) TCGA-JW-A5VL-01 1 93657578 93657578 C T CCDC18 Nonsense_Mutation p.Q216* 0.36 TCGA-JW-A5VL-01 1 93682190 93682190 C T CCDC18 Intron 0.47 TCGA-JW-A5VL-01 1 94027421 94027421 G A BCAR3 3'UTR 0.56 TCGA-JW-A5VL-01 1 94032962 94032962 C T BCAR3 Missense_Mutation p.E725K 0.24 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 1 94032969 94032969 C T BCAR3 Silent p.V722V 0.24 TCGA-JW-A5VL-01 1 94342116 94342116 C G DNTTIP2 Missense_Mutation p.E459Q 0.46 deleterious(0.03) probably_damaging(1) TCGA-JW-A5VL-01 1 94342815 94342815 C G DNTTIP2 Missense_Mutation p.E226Q 0.44 tolerated(0.07) benign(0.391) TCGA-JW-A5VL-01 1 94995549 94995549 G A F3 3'UTR 0.48 TCGA-JW-A5VL-01 1 9931320 9931320 C G CTNNBIP1 Missense_Mutation p.E38Q 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-JW-A5VL-01 1 99774150 99774150 G C LPPR4 3'UTR 0.36 TCGA-JW-A5VL-01 1 99774528 99774528 G C LPPR4 3'UTR 0.39 TCGA-JW-A5VL-01 20 10620521 10620521 C T JAG1 Silent p.R1094R 0.48 TCGA-JW-A5VL-01 20 10639327 10639327 G C JAG1 Missense_Mutation p.I161M 0.56 tolerated(0.06) probably_damaging(0.997) TCGA-JW-A5VL-01 20 13610679 13610679 C T TASP1 Missense_Mutation p.R16K 0.37 tolerated_low_confidence(1) benign(0) TCGA-JW-A5VL-01 20 16387016 16387016 C T KIF16B Intron 0.40 TCGA-JW-A5VL-01 20 17950958 17950958 G A MGME1 Nonsense_Mutation p.W152* 0.48 TCGA-JW-A5VL-01 20 18492926 18492926 G C SEC23B Missense_Mutation p.Q93H 0.41 tolerated(1) benign(0.035) TCGA-JW-A5VL-01 20 1902137 1902137 G C SIRPA Missense_Mutation p.R178T 0.41 deleterious(0) benign(0.034) TCGA-JW-A5VL-01 20 20599972 20599972 C A RALGAPA2 Silent p.V496V 0.46 TCGA-JW-A5VL-01 20 20621513 20621513 C T RALGAPA2 Missense_Mutation p.E128K 0.47 deleterious(0) probably_damaging(0.971) TCGA-JW-A5VL-01 20 22563544 22563544 C G FOXA2 Missense_Mutation p.L112F 0.44 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 20 23351321 23351321 C T GZF1 3'UTR 0.55 TCGA-JW-A5VL-01 20 23731323 23731323 C G CST1 Missense_Mutation p.D61H 0.34 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 20 25258981 25258981 G A PYGB Silent p.L294L 0.41 TCGA-JW-A5VL-01 20 25273136 25273136 C T PYGB Silent p.L688L 0.36 TCGA-JW-A5VL-01 20 25443110 25443110 G C NINL Missense_Mutation p.S1164C 0.48 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 20 25597140 25597140 G C NANP Silent p.L56L 0.48 TCGA-JW-A5VL-01 20 2635760 2635760 G C NOP56 Intron 0.41 TCGA-JW-A5VL-01 20 2686251 2686251 G C EBF4 Missense_Mutation p.E52Q 0.23 deleterious(0) probably_damaging(0.966) TCGA-JW-A5VL-01 20 2777278 2777278 C G CPXM1 Missense_Mutation p.E314Q 0.41 tolerated(0.05) possibly_damaging(0.596) TCGA-JW-A5VL-01 20 29632621 29632621 C T FRG1B Nonsense_Mutation p.Q146* 0.06 TCGA-JW-A5VL-01 20 2967413 2967413 G A PTPRA Missense_Mutation p.E149K 0.41 deleterious(0.03) benign(0.427) TCGA-JW-A5VL-01 20 29993963 29993963 G C DEFB121 5'UTR 0.46 TCGA-JW-A5VL-01 20 30028540 30028540 C G DEFB123 Silent p.L13L 0.31 TCGA-JW-A5VL-01 20 30193259 30193259 G C ID1 Missense_Mutation p.K23N 0.37 deleterious(0.01) benign(0.077) TCGA-JW-A5VL-01 20 3102562 3102562 C T UBOX5 Silent p.E241E 0.39 TCGA-JW-A5VL-01 20 32150184 32150184 G C CBFA2T2 5'UTR 0.42 TCGA-JW-A5VL-01 20 32217720 32217720 G A CBFA2T2 Missense_Mutation p.D419N 0.30 deleterious(0.04) benign(0.013) TCGA-JW-A5VL-01 20 32255523 32255523 C T ACTL10 Missense_Mutation p.R74C 0.24 deleterious(0) possibly_damaging(0.88) TCGA-JW-A5VL-01 20 33096935 33096935 C G ITCH 3'Flank 0.42 TCGA-JW-A5VL-01 20 33297290 33297290 C G TP53INP2 Silent p.L125L 0.52 TCGA-JW-A5VL-01 20 33300400 33300400 C T TP53INP2 3'UTR 0.47 TCGA-JW-A5VL-01 20 33875238 33875238 G A FAM83C Silent p.R448R 0.35 TCGA-JW-A5VL-01 20 33875249 33875249 G A FAM83C Silent p.L445L 0.33 TCGA-JW-A5VL-01 20 34095599 34095599 G C CEP250 Missense_Mutation p.E2223D 0.48 possibly_damaging(0.693) TCGA-JW-A5VL-01 20 34205752 34205752 C G SPAG4 Silent p.L176L 0.33 TCGA-JW-A5VL-01 20 3452162 3452162 C T ATRN Silent p.F136F 0.26 TCGA-JW-A5VL-01 20 34599058 34599058 G A CNBD2 Splice_Site p.X383_splice 0.42 TCGA-JW-A5VL-01 20 34618306 34618306 C G CNBD2 Silent p.L485L 0.36 TCGA-JW-A5VL-01 20 34820005 34820005 G T EPB41L1 3'UTR 0.29 TCGA-JW-A5VL-01 20 35090836 35090836 C G DLGAP4 Intron 0.48 TCGA-JW-A5VL-01 20 35207298 35207298 C T TGIF2 Missense_Mutation p.R41C 0.30 deleterious(0) probably_damaging(0.99) TCGA-JW-A5VL-01 20 35238065 35238065 G A C20orf24 Intron 0.35 TCGA-JW-A5VL-01 20 36033164 36033164 G C SRC 3'UTR 0.40 TCGA-JW-A5VL-01 20 36500431 36500431 G A CTNNBL1 3'UTR 0.44 TCGA-JW-A5VL-01 20 36720199 36720199 G C RPRD1B 3'UTR 0.36 TCGA-JW-A5VL-01 20 37005385 37005385 G C LBP 3'UTR 0.55 TCGA-JW-A5VL-01 20 372012 372012 G A TRIB3 Missense_Mutation p.E125K 0.37 deleterious(0) possibly_damaging(0.825) TCGA-JW-A5VL-01 20 3736209 3736209 G C C20orf27 Missense_Mutation p.L95V 0.58 tolerated(0.15) benign(0.014) TCGA-JW-A5VL-01 20 37653956 37653956 G A DHX35 Silent p.L585L 0.47 TCGA-JW-A5VL-01 20 3781913 3781913 G C CDC25B Missense_Mutation p.D240H 0.36 deleterious(0.02) benign(0.409) TCGA-JW-A5VL-01 20 3781997 3781997 G C CDC25B Missense_Mutation p.D268H 0.44 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 20 3904080 3904080 C T PANK2 3'UTR 0.32 TCGA-JW-A5VL-01 20 40706917 40706917 C G PTPRT 3'UTR 0.30 TCGA-JW-A5VL-01 20 40713456 40713456 G T PTPRT Missense_Mutation p.H1334Q 0.44 tolerated(1) possibly_damaging(0.697) TCGA-JW-A5VL-01 20 42086582 42086582 C G SRSF6 5'UTR 0.40 TCGA-JW-A5VL-01 20 42089540 42089540 C G SRSF6 Nonsense_Mutation p.S291* 0.42 TCGA-JW-A5VL-01 20 42331337 42331337 G A MYBL2 Missense_Mutation p.G387S 0.33 tolerated(0.09) probably_damaging(0.94) TCGA-JW-A5VL-01 20 42331338 42331338 G A MYBL2 Missense_Mutation p.G387D 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-JW-A5VL-01 20 43090648 43090648 C T C20orf62 Silent p.L130L 0.62 TCGA-JW-A5VL-01 20 43954624 43954624 C G SDC4 3'UTR 0.30 TCGA-JW-A5VL-01 20 44002607 44002607 C G TP53TG5 Missense_Mutation p.W271C 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.555) TCGA-JW-A5VL-01 20 44002619 44002619 C G TP53TG5 Silent p.A267A 0.25 TCGA-JW-A5VL-01 20 44697215 44697215 G C NCOA5 Missense_Mutation p.S143C 0.08 deleterious(0.02) possibly_damaging(0.788) TCGA-JW-A5VL-01 20 45237450 45237450 G A SLC13A3 Intron 0.56 TCGA-JW-A5VL-01 20 46282922 46282922 G C NCOA3 3'Flank 0.48 TCGA-JW-A5VL-01 20 4705483 4705483 G C PRND Missense_Mutation p.E96Q 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.847) TCGA-JW-A5VL-01 20 48260132 48260132 G C B4GALT5 Silent p.L140L 0.49 TCGA-JW-A5VL-01 20 48505316 48505316 C T SLC9A8 3'UTR 0.38 TCGA-JW-A5VL-01 20 49493209 49493209 G T BCAS4 3'UTR 0.32 TCGA-JW-A5VL-01 20 50721919 50721919 C G ERP29P1 3'Flank 0.46 TCGA-JW-A5VL-01 20 5171875 5171875 C G CDS2 3'UTR 0.43 TCGA-JW-A5VL-01 20 5294944 5294944 G C PROKR2 Silent p.L24L 0.45 TCGA-JW-A5VL-01 20 55072244 55072244 G T GCNT7 Missense_Mutation p.H19N 0.20 deleterious(0) probably_damaging(0.938) TCGA-JW-A5VL-01 20 55917854 55917854 G C SPO11 Silent p.L343L 0.31 TCGA-JW-A5VL-01 20 56818699 56818699 C T PPP4R1L 3'UTR 0.36 TCGA-JW-A5VL-01 20 56818705 56818705 C T PPP4R1L 3'UTR 0.43 TCGA-JW-A5VL-01 20 56886153 56886153 G C RAB22A Missense_Mutation p.D31H 0.49 tolerated(0.84) possibly_damaging(0.886) TCGA-JW-A5VL-01 20 56935536 56935536 G A RAB22A 3'UTR 0.45 TCGA-JW-A5VL-01 20 57428722 57428722 C T GNAS Silent p.F134F 0.38 TCGA-JW-A5VL-01 20 5903673 5903673 C G CHGB Missense_Mutation p.Q295E 0.36 tolerated(0.28) possibly_damaging(0.525) TCGA-JW-A5VL-01 20 60550041 60550041 C G TAF4 3'UTR 0.42 TCGA-JW-A5VL-01 20 60869655 60869655 G A OSBPL2 3'UTR 0.23 TCGA-JW-A5VL-01 20 61809863 61809863 C T MIR124-3 RNA 0.47 TCGA-JW-A5VL-01 20 62126344 62126344 C T EEF1A2 Silent p.V145V 0.47 TCGA-JW-A5VL-01 20 62703568 62703568 C T TCEA2 3'UTR 0.45 TCGA-JW-A5VL-01 21 11038739 11038739 G C BAGE2 RNA 0.09 TCGA-JW-A5VL-01 21 15884885 15884885 C G SAMSN1 Missense_Mutation p.D165H 0.33 deleterious(0.01) benign(0.029) TCGA-JW-A5VL-01 21 27090013 27090013 G C JAM2 3'Flank 0.36 TCGA-JW-A5VL-01 21 27852628 27852628 G C CYYR1 Silent p.L99L 0.46 TCGA-JW-A5VL-01 21 31587300 31587300 G A CLDN8 3'UTR 0.31 TCGA-JW-A5VL-01 21 32554751 32554751 G C TIAM1 Silent p.L958L 0.28 TCGA-JW-A5VL-01 21 34443825 34443825 G C OLIG1 3'UTR 0.71 TCGA-JW-A5VL-01 21 34925838 34925838 C T SON Missense_Mutation p.S1434L 0.38 benign(0.307) TCGA-JW-A5VL-01 21 35257379 35257379 G A ITSN1 Missense_Mutation p.E1571K 0.37 deleterious(0.05) possibly_damaging(0.679) TCGA-JW-A5VL-01 21 35469997 35469997 C G SLC5A3 3'UTR 0.42 TCGA-JW-A5VL-01 21 35471769 35471769 C G SLC5A3 3'UTR 0.41 TCGA-JW-A5VL-01 21 35742901 35742901 G C KCNE2 Missense_Mutation p.D42H 0.37 deleterious(0.05) possibly_damaging(0.74) TCGA-JW-A5VL-01 21 38862731 38862731 G A DYRK1A Missense_Mutation p.D307N 0.31 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 21 39087250 39087250 C G KCNJ6 Silent p.V70V 0.31 TCGA-JW-A5VL-01 21 42762503 42762503 C T MX2 Silent p.L248L 0.49 TCGA-JW-A5VL-01 21 43160907 43160907 C T RIPK4 3'UTR 0.37 TCGA-JW-A5VL-01 21 44450615 44450615 G C PKNOX1 3'UTR 0.30 TCGA-JW-A5VL-01 21 45666246 45666246 G C DNMT3L 3'UTR 0.54 TCGA-JW-A5VL-01 21 45709596 45709596 G A AIRE Missense_Mutation p.E237K 0.38 deleterious(0.02) probably_damaging(0.958) TCGA-JW-A5VL-01 21 46021247 46021247 C T KRTAP10-7 Silent p.V242V 0.44 TCGA-JW-A5VL-01 21 46285354 46285354 G C PTTG1IP Missense_Mutation p.Q42E 0.45 tolerated(1) benign(0.004) TCGA-JW-A5VL-01 21 46596439 46596439 G C ADARB1 Missense_Mutation p.E275Q 0.40 tolerated(0.16) probably_damaging(0.984) TCGA-JW-A5VL-01 21 47410899 47410899 C G COL6A1 Missense_Mutation p.Q355E 0.41 tolerated(0.21) unknown(0) TCGA-JW-A5VL-01 21 47423314 47423314 C G COL6A1 Missense_Mutation p.S825C 0.33 deleterious(0.04) possibly_damaging(0.788) TCGA-JW-A5VL-01 21 47545434 47545434 G A COL6A2 Silent p.E624E 0.48 TCGA-JW-A5VL-01 21 47817292 47817292 G C PCNT Missense_Mutation p.E1444Q 0.35 possibly_damaging(0.727) TCGA-JW-A5VL-01 21 47860938 47860938 C T PCNT Silent p.I3188I 0.33 TCGA-JW-A5VL-01 22 17469015 17469015 G C GAB4 Missense_Mutation p.S174C 0.39 deleterious(0) benign(0.184) TCGA-JW-A5VL-01 22 17687984 17687984 C G CECR1 Missense_Mutation p.Q173H 0.31 tolerated(0.16) benign(0.002) TCGA-JW-A5VL-01 22 17688135 17688135 C T CECR1 Nonsense_Mutation p.W123* 0.45 TCGA-JW-A5VL-01 22 18378151 18378151 G A MICAL3 Nonsense_Mutation p.Q450* 0.35 TCGA-JW-A5VL-01 22 18379666 18379666 C G MICAL3 Missense_Mutation p.D344H 0.37 possibly_damaging(0.856) TCGA-JW-A5VL-01 22 19120254 19120254 C G DGCR14 3'UTR 0.36 TCGA-JW-A5VL-01 22 19241716 19241716 C T CLTCL1 Missense_Mutation p.M95I 0.35 deleterious(0.05) benign(0.076) TCGA-JW-A5VL-01 22 19241721 19241721 C T CLTCL1 Missense_Mutation p.E94K 0.37 deleterious(0.03) benign(0.027) TCGA-JW-A5VL-01 22 19442308 19442308 G A UFD1L Silent p.I271I 0.39 TCGA-JW-A5VL-01 22 19903312 19903312 G A TXNRD2 Silent p.C168C 0.45 TCGA-JW-A5VL-01 22 19957528 19957528 C T ARVCF 3'UTR 0.38 TCGA-JW-A5VL-01 22 20457822 20457822 C T RIMBP3 Silent p.Q1160Q 0.19 TCGA-JW-A5VL-01 22 20786051 20786051 G C SCARF2 Missense_Mutation p.F105L 0.67 deleterious(0.03) probably_damaging(0.998) TCGA-JW-A5VL-01 22 21056386 21056386 G A TMEM191A RNA 0.33 TCGA-JW-A5VL-01 22 21056444 21056444 G A TMEM191A RNA 0.38 TCGA-JW-A5VL-01 22 21327625 21327625 G T AIFM3 Nonsense_Mutation p.E21* 0.46 TCGA-JW-A5VL-01 22 21327739 21327739 C T AIFM3 Missense_Mutation p.H59Y 0.24 tolerated_low_confidence(0.23) benign(0.177) TCGA-JW-A5VL-01 22 21336750 21336750 C G LZTR1 Missense_Mutation p.F30L 0.33 deleterious_low_confidence(0.01) benign(0.01) TCGA-JW-A5VL-01 22 21799586 21799586 C A HIC2 Silent p.L134L 0.48 TCGA-JW-A5VL-01 22 21982617 21982617 C A YDJC 3'UTR 0.45 TCGA-JW-A5VL-01 22 22035640 22035640 C G PPIL2 Missense_Mutation p.I116M 0.33 deleterious(0) probably_damaging(0.989) TCGA-JW-A5VL-01 22 22311726 22311726 G A TOP3B Silent p.F783F 0.47 TCGA-JW-A5VL-01 22 22677154 22677154 G C IGLV1-51 Missense_Mutation p.G61A 0.42 deleterious(0.01) probably_damaging(0.97) TCGA-JW-A5VL-01 22 22842059 22842059 G C ZNF280B 3'UTR 0.25 TCGA-JW-A5VL-01 22 22988825 22988825 G A GGTLC2 Missense_Mutation p.E4K 0.13 tolerated(0.2) benign(0.14) TCGA-JW-A5VL-01 22 22988948 22988948 G C GGTLC2 Missense_Mutation p.E45Q 0.31 tolerated(0.18) possibly_damaging(0.908) TCGA-JW-A5VL-01 22 23154483 23154483 G C IGLV3-10 Missense_Mutation p.E18Q 0.34 deleterious(0.01) benign(0.073) TCGA-JW-A5VL-01 22 24180756 24180756 G C DERL3 Silent p.L76L 0.45 TCGA-JW-A5VL-01 22 24452714 24452714 G C CABIN1 Missense_Mutation p.E385Q 0.25 deleterious(0.01) possibly_damaging(0.464) TCGA-JW-A5VL-01 22 25150144 25150144 G A PIWIL3 Missense_Mutation p.L272F 0.48 deleterious(0.01) probably_damaging(0.992) TCGA-JW-A5VL-01 22 25264726 25264726 C G SGSM1 Missense_Mutation p.Q399E 0.42 tolerated(0.82) benign(0.138) TCGA-JW-A5VL-01 22 25280109 25280109 G A SGSM1 Missense_Mutation p.D584N 0.39 tolerated(0.1) benign(0.008) TCGA-JW-A5VL-01 22 28193385 28193385 C T MN1 Silent p.V1049V 0.37 TCGA-JW-A5VL-01 22 28193390 28193390 C T MN1 Missense_Mutation p.E1048K 0.38 benign(0.24) TCGA-JW-A5VL-01 22 28193687 28193687 C T MN1 Missense_Mutation p.D949N 0.45 probably_damaging(0.999) TCGA-JW-A5VL-01 22 28195777 28195777 G C MN1 Missense_Mutation p.S252C 0.39 possibly_damaging(0.855) TCGA-JW-A5VL-01 22 29695785 29695785 G C EWSR1 Missense_Mutation p.L630F 0.47 deleterious_low_confidence(0) unknown(0) TCGA-JW-A5VL-01 22 29879471 29879471 G C NEFH Missense_Mutation p.E331Q 0.31 deleterious(0.01) unknown(0) TCGA-JW-A5VL-01 22 29966479 29966479 G A NIPSNAP1 Silent p.L47L 0.31 TCGA-JW-A5VL-01 22 30953252 30953252 G C GAL3ST1 Missense_Mutation p.S43C 0.45 deleterious(0.03) possibly_damaging(0.778) TCGA-JW-A5VL-01 22 32352575 32352575 C T YWHAH Silent p.F179F 0.46 TCGA-JW-A5VL-01 22 32589259 32589259 C G RFPL2 Intron 0.32 TCGA-JW-A5VL-01 22 33670487 33670487 C G LARGE Missense_Mutation p.E733Q 0.36 deleterious(0.04) probably_damaging(0.999) TCGA-JW-A5VL-01 22 34157361 34157361 C T LARGE Missense_Mutation p.E35K 0.34 deleterious_low_confidence(0.02) benign(0.079) TCGA-JW-A5VL-01 22 35462996 35462996 G A ISX 5'UTR 0.45 TCGA-JW-A5VL-01 22 36889694 36889694 C T FOXRED2 Missense_Mutation p.R594Q 0.32 deleterious(0) possibly_damaging(0.852) TCGA-JW-A5VL-01 22 37268366 37268366 C G NCF4 Intron 0.43 TCGA-JW-A5VL-01 22 37581393 37581393 C G C1QTNF6 Missense_Mutation p.V52L 0.39 tolerated(0.4) benign(0.02) TCGA-JW-A5VL-01 22 37962412 37962412 C T CDC42EP1 Missense_Mutation p.S19L 0.37 deleterious(0.05) possibly_damaging(0.889) TCGA-JW-A5VL-01 22 38227805 38227805 C T ANKRD54 3'UTR 0.24 TCGA-JW-A5VL-01 22 38363798 38363798 C T POLR2F 3'UTR 0.38 TCGA-JW-A5VL-01 22 38864161 38864161 G C KDELR3 5'UTR 0.37 TCGA-JW-A5VL-01 22 38915971 38915971 C A DMC1 3'UTR 0.46 TCGA-JW-A5VL-01 22 38915980 38915980 C T DMC1 3'UTR 0.49 TCGA-JW-A5VL-01 22 39174669 39174669 C G DNAL4 3'UTR 0.49 TCGA-JW-A5VL-01 22 39261895 39261895 G C CBX6 3'UTR 0.44 TCGA-JW-A5VL-01 22 39770506 39770506 C G SYNGR1 Missense_Mutation p.I95M 0.44 tolerated(0.07) probably_damaging(1) TCGA-JW-A5VL-01 22 39928446 39928446 C G RPS19BP1 Missense_Mutation p.Q45H 0.41 tolerated(0.11) possibly_damaging(0.662) TCGA-JW-A5VL-01 22 40662502 40662502 A G TNRC6B Silent p.T756T 0.40 TCGA-JW-A5VL-01 22 40728247 40728247 T A TNRC6B 3'UTR 0.40 TCGA-JW-A5VL-01 22 40729731 40729731 C T TNRC6B 3'UTR 0.48 TCGA-JW-A5VL-01 22 40730986 40730986 C G TNRC6B 3'UTR 0.41 TCGA-JW-A5VL-01 22 41617260 41617260 C T L3MBTL2 Missense_Mutation p.S304F 0.42 deleterious(0) benign(0.221) TCGA-JW-A5VL-01 22 41745257 41745257 G T ZC3H7B Missense_Mutation p.A634S 0.56 deleterious(0.02) benign(0.33) TCGA-JW-A5VL-01 22 41831690 41831690 C G TOB2 3'UTR 0.41 TCGA-JW-A5VL-01 22 41832023 41832023 G C TOB2 3'UTR 0.57 TCGA-JW-A5VL-01 22 41832310 41832310 G C TOB2 3'UTR 0.37 TCGA-JW-A5VL-01 22 42970720 42970720 C G SERHL2 3'Flank 0.51 TCGA-JW-A5VL-01 22 44319931 44319931 C T PNPLA3 Missense_Mutation p.S47L 0.35 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 22 44681447 44681447 G C KIAA1644 Missense_Mutation p.R154G 0.39 tolerated(0.05) benign(0) TCGA-JW-A5VL-01 22 45132662 45132662 C T PRR5 Silent p.L257L 0.49 TCGA-JW-A5VL-01 22 45132663 45132663 C T PRR5 Missense_Mutation p.L258F 0.48 tolerated(0.56) possibly_damaging(0.536) TCGA-JW-A5VL-01 22 45210624 45210624 G A ARHGAP8 Silent p.L246L 0.52 TCGA-JW-A5VL-01 22 45309894 45309894 G C PHF21B Silent p.L213L 0.61 TCGA-JW-A5VL-01 22 45813487 45813487 G A RIBC2 Missense_Mutation p.E68K 0.45 deleterious(0.02) possibly_damaging(0.869) TCGA-JW-A5VL-01 22 45970481 45970481 C G FBLN1 Missense_Mutation p.I596M 0.45 deleterious(0.02) benign(0.069) TCGA-JW-A5VL-01 22 45996360 45996360 C G FBLN1 3'UTR 0.35 TCGA-JW-A5VL-01 22 50878267 50878267 G A PPP6R2 Missense_Mutation p.D730N 0.26 tolerated(0.08) possibly_damaging(0.828) TCGA-JW-A5VL-01 22 50883564 50883564 G A SBF1 3'UTR 0.22 TCGA-JW-A5VL-01 22 50903265 50903265 C G SBF1 Missense_Mutation p.E472Q 0.47 tolerated(0.21) probably_damaging(0.932) TCGA-JW-A5VL-01 22 50989592 50989592 C T SYCE3 3'UTR 0.47 TCGA-JW-A5VL-01 22 51009456 51009456 T C CPT1B Missense_Mutation p.D631G 0.37 tolerated(0.38) benign(0.001) TCGA-JW-A5VL-01 2 100013320 100013320 C T EIF5B Nonsense_Mutation p.Q1118* 0.48 TCGA-JW-A5VL-01 2 102045415 102045415 C G RFX8 Intron 0.32 TCGA-JW-A5VL-01 2 102503688 102503688 C G MAP4K4 Missense_Mutation p.L1109V 0.43 tolerated_low_confidence(0.07) probably_damaging(0.965) TCGA-JW-A5VL-01 2 103003430 103003430 G A IL18R1 Missense_Mutation p.D307N 0.58 tolerated(0.05) benign(0.347) TCGA-JW-A5VL-01 2 105473121 105473121 G C POU3F3 Missense_Mutation p.E385Q 0.36 deleterious(0.02) benign(0.17) TCGA-JW-A5VL-01 2 105473394 105473394 G A POU3F3 Missense_Mutation p.D476N 0.52 deleterious(0) possibly_damaging(0.553) TCGA-JW-A5VL-01 2 107460052 107460052 C T ST6GAL2 Missense_Mutation p.D128N 0.50 benign(0.004) TCGA-JW-A5VL-01 2 10829970 10829970 G A NOL10 Silent p.L6L 0.44 TCGA-JW-A5VL-01 2 109087433 109087433 C T GCC2 Nonsense_Mutation p.Q550* 0.62 TCGA-JW-A5VL-01 2 109088372 109088372 G C GCC2 Missense_Mutation p.E863Q 0.57 deleterious(0.03) probably_damaging(0.994) TCGA-JW-A5VL-01 2 109381352 109381352 C T RANBP2 Missense_Mutation p.H1453Y 0.33 tolerated(1) benign(0.056) TCGA-JW-A5VL-01 2 109383853 109383853 G C RANBP2 Missense_Mutation p.Q2286H 0.46 deleterious(0.04) probably_damaging(0.948) TCGA-JW-A5VL-01 2 110300763 110300763 G C SEPT10 3'UTR 0.35 TCGA-JW-A5VL-01 2 113033412 113033412 C T ZC3H6 5'UTR 0.39 TCGA-JW-A5VL-01 2 113079381 113079381 G C ZC3H6 Missense_Mutation p.G342A 0.34 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 2 113286340 113286340 C G TTL Missense_Mutation p.Q368E 0.75 tolerated_low_confidence(1) benign(0.006) TCGA-JW-A5VL-01 2 113286901 113286901 C T TTL 3'UTR 0.57 TCGA-JW-A5VL-01 2 113288821 113288821 C T TTL 3'UTR 0.67 TCGA-JW-A5VL-01 2 113288894 113288894 C T TTL 3'UTR 0.55 TCGA-JW-A5VL-01 2 113288911 113288911 C T TTL 3'UTR 0.50 TCGA-JW-A5VL-01 2 113344194 113344194 C G CHCHD5 Intron 0.37 TCGA-JW-A5VL-01 2 113480079 113480079 G C NT5DC4 Missense_Mutation p.E102Q 0.14 tolerated(0.21) benign(0.086) TCGA-JW-A5VL-01 2 113484277 113484277 G A NT5DC4 Missense_Mutation p.E378K 0.27 tolerated(0.24) benign(0.005) TCGA-JW-A5VL-01 2 113976067 113976067 G C PAX8 3'UTR 0.31 TCGA-JW-A5VL-01 2 114257652 114257652 G A FOXD4L1 Silent p.S273S 0.34 TCGA-JW-A5VL-01 2 114335700 114335700 C T FAM138B RNA 0.47 TCGA-JW-A5VL-01 2 114513965 114513965 G A SLC35F5 Missense_Mutation p.R8C 0.30 tolerated_low_confidence(0.1) unknown(0) TCGA-JW-A5VL-01 2 118865890 118865890 C T INSIG2 Nonsense_Mutation p.Q224* 0.57 TCGA-JW-A5VL-01 2 120414017 120414017 G T PCDP1 Missense_Mutation p.A832S 0.20 tolerated(0.05) possibly_damaging(0.527) TCGA-JW-A5VL-01 2 120979971 120979971 G C TMEM185B Silent p.L194L 0.33 TCGA-JW-A5VL-01 2 120980339 120980339 G C TMEM185B Missense_Mutation p.R72G 0.22 deleterious(0) probably_damaging(0.966) TCGA-JW-A5VL-01 2 121746932 121746932 G C GLI2 Missense_Mutation p.E1148Q 0.37 deleterious(0.02) probably_damaging(0.986) TCGA-JW-A5VL-01 2 122493260 122493260 C A NIFK Nonsense_Mutation p.E58* 0.53 TCGA-JW-A5VL-01 2 1251136 1251136 G A SNTG2 Missense_Mutation p.G309E 0.34 tolerated(0.07) benign(0.303) TCGA-JW-A5VL-01 2 125671805 125671805 C T CNTNAP5 Silent p.F1287F 0.27 TCGA-JW-A5VL-01 2 127809887 127809887 C G BIN1 Missense_Mutation p.E439Q 0.24 tolerated(0.33) benign(0.007) TCGA-JW-A5VL-01 2 128030510 128030510 C T ERCC3 Silent p.Q586Q 0.61 TCGA-JW-A5VL-01 2 128051204 128051204 G A ERCC3 Missense_Mutation p.S40L 0.45 tolerated(0.2) benign(0.018) TCGA-JW-A5VL-01 2 128458967 128458967 C T WDR33 3'UTR 0.46 TCGA-JW-A5VL-01 2 12880670 12880670 C T TRIB2 Missense_Mutation p.S261F 0.28 deleterious(0.02) possibly_damaging(0.842) TCGA-JW-A5VL-01 2 130737913 130737913 C G RAB6C Silent p.L75L 0.38 TCGA-JW-A5VL-01 2 130738343 130738343 C G RAB6C Missense_Mutation p.Q219E 0.35 tolerated_low_confidence(0.08) benign(0) TCGA-JW-A5VL-01 2 131525276 131525276 G C AMER3 3'UTR 0.35 TCGA-JW-A5VL-01 2 131803866 131803866 G C ARHGEF4 3'UTR 0.26 TCGA-JW-A5VL-01 2 135710843 135710843 C G CCNT2 Nonsense_Mutation p.S273* 0.32 TCGA-JW-A5VL-01 2 135710948 135710948 C G CCNT2 Missense_Mutation p.A308G 0.26 tolerated(0.1) benign(0.075) TCGA-JW-A5VL-01 2 135738750 135738750 G C MAP3K19 Missense_Mutation p.I1187M 0.26 deleterious(0) probably_damaging(0.992) TCGA-JW-A5VL-01 2 136743150 136743150 C G DARS 5'UTR 0.28 TCGA-JW-A5VL-01 2 139428603 139428603 G C NXPH2 Missense_Mutation p.F228L 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VL-01 2 141812716 141812716 G C LRP1B Missense_Mutation p.F507L 0.29 benign(0.153) TCGA-JW-A5VL-01 2 144704100 144704100 C G GTDC1 3'UTR 0.32 TCGA-JW-A5VL-01 2 144966248 144966248 G A GTDC1 Missense_Mutation p.P34L 0.21 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 2 148674909 148674909 G C ACVR2A Missense_Mutation p.E244Q 0.29 tolerated(0.08) possibly_damaging(0.639) TCGA-JW-A5VL-01 2 149227456 149227456 G C MBD5 Silent p.L648L 0.35 TCGA-JW-A5VL-01 2 149241014 149241014 G C MBD5 Intron 0.45 TCGA-JW-A5VL-01 2 149837962 149837962 G C KIF5C Missense_Mutation p.E486Q 0.31 deleterious(0) probably_damaging(0.984) TCGA-JW-A5VL-01 2 149838030 149838030 G T KIF5C Missense_Mutation p.K508N 0.25 tolerated(0.07) benign(0.12) TCGA-JW-A5VL-01 2 149838051 149838051 G A KIF5C Silent p.L515L 0.29 TCGA-JW-A5VL-01 2 152127142 152127142 C T NMI 3'UTR 0.57 TCGA-JW-A5VL-01 2 152316617 152316618 TG ATA RIF1 Frame_Shift_Ins p.M1020Nfs*10 0.21 TCGA-JW-A5VL-01 2 152375533 152375533 C T NEB Missense_Mutation p.M7547I 0.38 probably_damaging(0.993) TCGA-JW-A5VL-01 2 152375560 152375560 C G NEB Missense_Mutation p.K7538N 0.39 probably_damaging(1) TCGA-JW-A5VL-01 2 152472557 152472557 G C NEB Missense_Mutation p.P3750A 0.34 possibly_damaging(0.542) TCGA-JW-A5VL-01 2 152496368 152496368 C T NEB Intron 0.30 TCGA-JW-A5VL-01 2 152499129 152499129 G C NEB Missense_Mutation p.P2778A 0.35 probably_damaging(0.91) TCGA-JW-A5VL-01 2 152544883 152544883 C T NEB Missense_Mutation p.E780K 0.29 possibly_damaging(0.848) TCGA-JW-A5VL-01 2 152581994 152581994 G C NEB Missense_Mutation p.I125M 0.31 probably_damaging(0.945) TCGA-JW-A5VL-01 2 158182121 158182121 C G ERMN Missense_Mutation p.E25Q 0.27 deleterious(0.01) probably_damaging(0.976) TCGA-JW-A5VL-01 2 160019895 160019895 C T TANC1 Missense_Mutation p.H262Y 0.18 tolerated(0.16) benign(0.003) TCGA-JW-A5VL-01 2 160080864 160080864 G A TANC1 Missense_Mutation p.G1267E 0.17 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 2 160755557 160755557 G A LY75-CD302 Silent p.F36F 0.24 TCGA-JW-A5VL-01 2 161029180 161029180 G C ITGB6 Missense_Mutation p.S274C 0.30 deleterious(0.04) probably_damaging(1) TCGA-JW-A5VL-01 2 161157214 161157214 A G RBMS1 Silent p.A196A 0.43 TCGA-JW-A5VL-01 2 162280548 162280548 C T TBR1 Missense_Mutation p.S620L 0.21 deleterious(0.02) possibly_damaging(0.885) TCGA-JW-A5VL-01 2 163070562 163070562 G A FAP Silent p.L296L 0.18 TCGA-JW-A5VL-01 2 163217009 163217009 G C GCA 3'UTR 0.50 TCGA-JW-A5VL-01 2 164466975 164466975 G A FIGN Missense_Mutation p.S456F 0.33 deleterious(0.01) benign(0.123) TCGA-JW-A5VL-01 2 165552208 165552208 G T COBLL1 Missense_Mutation p.S603Y 0.32 tolerated(0.98) benign(0.001) TCGA-JW-A5VL-01 2 165945445 165945445 C T SCN3A 3'UTR 0.30 TCGA-JW-A5VL-01 2 165947650 165947650 G C SCN3A Missense_Mutation p.I1671M 0.30 deleterious(0) probably_damaging(0.968) TCGA-JW-A5VL-01 2 166740408 166740408 C T TTC21B Missense_Mutation p.E1194K 0.28 deleterious(0.01) possibly_damaging(0.611) TCGA-JW-A5VL-01 2 167141147 167141147 C G SCN9A Missense_Mutation p.R597P 0.27 deleterious(0.03) probably_damaging(0.989) TCGA-JW-A5VL-01 2 167142954 167142954 C T SCN9A Silent p.E498E 0.26 TCGA-JW-A5VL-01 2 167143087 167143087 C T SCN9A Missense_Mutation p.R454K 0.24 tolerated(0.96) benign(0.003) TCGA-JW-A5VL-01 2 167143093 167143093 C T SCN9A Missense_Mutation p.R452K 0.24 tolerated(0.83) benign(0.014) TCGA-JW-A5VL-01 2 16734221 16734221 G C FAM49A Missense_Mutation p.R319G 0.42 deleterious(0) possibly_damaging(0.719) TCGA-JW-A5VL-01 2 169780115 169780115 G C ABCB11 3'UTR 0.22 TCGA-JW-A5VL-01 2 170131735 170131735 G A LRP2 Missense_Mutation p.H596Y 0.31 possibly_damaging(0.616) TCGA-JW-A5VL-01 2 170134304 170134304 C G LRP2 Missense_Mutation p.D575H 0.63 probably_damaging(1) TCGA-JW-A5VL-01 2 170136053 170136053 G A LRP2 Missense_Mutation p.S465F 0.42 probably_damaging(0.971) TCGA-JW-A5VL-01 2 170336009 170336009 G A BBS5 5'UTR 0.27 TCGA-JW-A5VL-01 2 170394627 170394627 C G FASTKD1 Missense_Mutation p.R657T 0.32 tolerated(0.07) benign(0.063) TCGA-JW-A5VL-01 2 171574250 171574250 G C SP5 3'UTR 0.24 TCGA-JW-A5VL-01 2 171823102 171823102 C T GORASP2 3'UTR 0.30 TCGA-JW-A5VL-01 2 172016841 172016841 G C TLK1 Missense_Mutation p.S33C 0.34 tolerated_low_confidence(0.08) benign(0.03) TCGA-JW-A5VL-01 2 172693632 172693632 G A SLC25A12 Missense_Mutation p.S204L 0.26 deleterious(0.01) benign(0.434) TCGA-JW-A5VL-01 2 172848125 172848125 G A HAT1 Missense_Mutation p.M373I 0.23 tolerated(0.16) benign(0.007) TCGA-JW-A5VL-01 2 172965437 172965437 G C DLX2 Missense_Mutation p.S274W 0.33 deleterious(0.01) benign(0.377) TCGA-JW-A5VL-01 2 173352121 173352121 G C ITGA6 Silent p.L700L 0.28 TCGA-JW-A5VL-01 2 173832152 173832152 G C RAPGEF4 Missense_Mutation p.M328I 0.24 deleterious(0.03) benign(0.05) TCGA-JW-A5VL-01 2 175618995 175618995 C G CHRNA1 Missense_Mutation p.M189I 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VL-01 2 175624354 175624354 G A CHRNA1 Silent p.L17L 0.29 TCGA-JW-A5VL-01 2 17698314 17698314 C T RAD51AP2 Missense_Mutation p.E457K 0.35 tolerated(0.44) benign(0.041) TCGA-JW-A5VL-01 2 178095920 178095920 C G NFE2L2 Missense_Mutation p.E471Q 0.17 deleterious(0.02) probably_damaging(0.922) TCGA-JW-A5VL-01 2 178096229 178096229 C G NFE2L2 Missense_Mutation p.D368H 0.32 deleterious(0) probably_damaging(0.993) TCGA-JW-A5VL-01 2 178096533 178096533 C G NFE2L2 Missense_Mutation p.L266F 0.28 tolerated(0.16) possibly_damaging(0.482) TCGA-JW-A5VL-01 2 178097980 178097980 C G NFE2L2 Missense_Mutation p.E134Q 0.27 deleterious(0.03) possibly_damaging(0.656) TCGA-JW-A5VL-01 2 178416151 178416151 G A TTC30B Silent p.F447F 0.17 TCGA-JW-A5VL-01 2 17888515 17888515 G C SMC6 Missense_Mutation p.F659L 0.53 tolerated(0.06) benign(0.029) TCGA-JW-A5VL-01 2 179325119 179325119 G A DFNB59 Missense_Mutation p.E238K 0.24 tolerated(0.66) benign(0.004) TCGA-JW-A5VL-01 2 179396953 179396953 C G TTN Missense_Mutation p.E34797Q 0.31 TCGA-JW-A5VL-01 2 179416909 179416909 C T TTN Missense_Mutation p.D30240N 0.56 TCGA-JW-A5VL-01 2 179433331 179433331 C G TTN Missense_Mutation p.R25843T 0.39 TCGA-JW-A5VL-01 2 179440066 179440066 C A TTN Missense_Mutation p.G23598V 0.28 TCGA-JW-A5VL-01 2 179444734 179444734 C G TTN Missense_Mutation p.R22427P 0.54 TCGA-JW-A5VL-01 2 179465782 179465782 C G TTN Missense_Mutation p.E18617Q 0.32 TCGA-JW-A5VL-01 2 179470335 179470335 C A TTN Missense_Mutation p.G17896V 0.28 TCGA-JW-A5VL-01 2 179479247 179479247 C T TTN Missense_Mutation p.E16332K 0.25 TCGA-JW-A5VL-01 2 179522671 179522671 C A TTN Missense_Mutation p.V12604F 0.38 TCGA-JW-A5VL-01 2 179527510 179527510 C G TTN Missense_Mutation p.E12274Q 0.21 TCGA-JW-A5VL-01 2 179528238 179528238 C T TTN Missense_Mutation p.E12180K 0.29 TCGA-JW-A5VL-01 2 179582334 179582334 C G TTN Missense_Mutation p.D8423H 0.17 TCGA-JW-A5VL-01 2 179585914 179585914 A C TTN Missense_Mutation p.V7611G 0.57 TCGA-JW-A5VL-01 2 179635314 179635314 G A TTN Silent p.V2735V 0.23 TCGA-JW-A5VL-01 2 179641355 179641355 C G TTN Missense_Mutation p.E1746Q 0.29 TCGA-JW-A5VL-01 2 179666893 179666893 C T TTN Silent p.A89A 0.29 TCGA-JW-A5VL-01 2 182780888 182780888 C G SSFA2 Missense_Mutation p.Q841E 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-JW-A5VL-01 2 183387104 183387104 G T PDE1A 5'UTR 0.21 TCGA-JW-A5VL-01 2 183616895 183616895 C T DNAJC10 Missense_Mutation p.H511Y 0.49 tolerated(0.07) probably_damaging(0.949) TCGA-JW-A5VL-01 2 186618464 186618464 G C FSIP2 Missense_Mutation p.E385Q 0.29 probably_damaging(0.995) TCGA-JW-A5VL-01 2 186653530 186653530 C T FSIP2 Missense_Mutation p.S645L 0.43 probably_damaging(0.997) TCGA-JW-A5VL-01 2 187455218 187455218 C T ITGAV Silent p.F51F 0.19 TCGA-JW-A5VL-01 2 187531487 187531487 G A ITGAV Silent p.V741V 0.26 TCGA-JW-A5VL-01 2 190324117 190324117 G C WDR75 Missense_Mutation p.D249H 0.25 deleterious(0.02) probably_damaging(0.957) TCGA-JW-A5VL-01 2 191208642 191208642 G C INPP1 5'UTR 0.23 TCGA-JW-A5VL-01 2 191827824 191827824 C T GLS 3'UTR 0.34 TCGA-JW-A5VL-01 2 191828040 191828040 G A GLS 3'UTR 0.24 TCGA-JW-A5VL-01 2 196729379 196729379 G C DNAH7 Missense_Mutation p.R2334G 0.35 tolerated(0.52) possibly_damaging(0.779) TCGA-JW-A5VL-01 2 197521510 197521510 C G CCDC150 Silent p.L110L 0.25 TCGA-JW-A5VL-01 2 197700455 197700455 G C PGAP1 3'UTR 0.15 TCGA-JW-A5VL-01 2 197705904 197705904 C G PGAP1 3'UTR 0.32 TCGA-JW-A5VL-01 2 197943531 197943531 C G ANKRD44 Missense_Mutation p.E491Q 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VL-01 2 198572714 198572714 C G MARS2 3'UTR 0.29 TCGA-JW-A5VL-01 2 201354957 201354957 G C KCTD18 Missense_Mutation p.P383A 0.31 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-JW-A5VL-01 2 201457893 201457893 G A AOX1 Missense_Mutation p.E24K 0.32 deleterious(0.04) probably_damaging(1) TCGA-JW-A5VL-01 2 201531455 201531455 C T AOX1 Missense_Mutation p.P1197S 0.23 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 2 201676637 201676637 C T BZW1 5'Flank 0.15 TCGA-JW-A5VL-01 2 201800483 201800483 C G ORC2 Missense_Mutation p.R216T 0.28 tolerated(0.23) benign(0.001) TCGA-JW-A5VL-01 2 201800579 201800579 G C ORC2 Missense_Mutation p.S184C 0.30 deleterious(0) probably_damaging(0.986) TCGA-JW-A5VL-01 2 202344764 202344764 G C STRADB Missense_Mutation p.E375Q 0.26 tolerated(0.68) benign(0.001) TCGA-JW-A5VL-01 2 202344895 202344895 C T STRADB Silent p.F418F 0.28 TCGA-JW-A5VL-01 2 202345043 202345043 C T STRADB 3'UTR 0.30 TCGA-JW-A5VL-01 2 202566482 202566482 C G ALS2 3'UTR 0.15 TCGA-JW-A5VL-01 2 20401645 20401645 C T SDC1 3'UTR 0.35 TCGA-JW-A5VL-01 2 204299190 204299190 C G ABI2 3'Flank 0.34 TCGA-JW-A5VL-01 2 206023452 206023452 G A PARD3B Intron 0.25 TCGA-JW-A5VL-01 2 207170423 207170423 G A ZDBF2 Missense_Mutation p.E391K 0.29 tolerated(0.18) possibly_damaging(0.678) TCGA-JW-A5VL-01 2 207173526 207173526 C G ZDBF2 Missense_Mutation p.S1425C 0.31 tolerated(0.09) possibly_damaging(0.7) TCGA-JW-A5VL-01 2 207945673 207945673 C T KLF7 3'UTR 0.21 TCGA-JW-A5VL-01 2 20845097 20845097 C A HS1BP3 Intron 0.36 TCGA-JW-A5VL-01 2 210685166 210685166 G A UNC80 Silent p.K698K 0.61 TCGA-JW-A5VL-01 2 212240534 212240534 C T ERBB4 3'UTR 0.59 TCGA-JW-A5VL-01 2 21225910 21225910 C T APOB Silent p.V4128V 0.42 TCGA-JW-A5VL-01 2 21256266 21256266 C A APOB Missense_Mutation p.Q343H 0.39 probably_damaging(0.997) TCGA-JW-A5VL-01 2 213869742 213869742 T G IKZF2 3'UTR 0.32 TCGA-JW-A5VL-01 2 213869743 213869743 C T IKZF2 3'UTR 0.29 TCGA-JW-A5VL-01 2 215646072 215646072 G A BARD1 Nonsense_Mutation p.Q176* 0.37 TCGA-JW-A5VL-01 2 215875124 215875124 C G ABCA12 Missense_Mutation p.L801F 0.37 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 2 215876785 215876785 G A ABCA12 Silent p.L677L 0.31 TCGA-JW-A5VL-01 2 215884415 215884415 C T ABCA12 Missense_Mutation p.E465K 0.32 tolerated(0.07) benign(0.008) TCGA-JW-A5VL-01 2 216298069 216298069 C G FN1 Silent p.G131G 0.32 TCGA-JW-A5VL-01 2 216964747 216964747 G C TMEM169 Missense_Mutation p.E126Q 0.28 tolerated(0.09) probably_damaging(0.947) TCGA-JW-A5VL-01 2 217002874 217002874 G A XRCC5 Silent p.L438L 0.49 TCGA-JW-A5VL-01 2 218674679 218674679 C G TNS1 Missense_Mutation p.E1610Q 0.30 deleterious(0) probably_damaging(0.985) TCGA-JW-A5VL-01 2 219134716 219134716 C G AAMP Missense_Mutation p.E32Q 0.32 deleterious(0.04) benign(0.362) TCGA-JW-A5VL-01 2 219679158 219679158 G C CYP27A1 Missense_Mutation p.D414H 0.17 deleterious(0) possibly_damaging(0.806) TCGA-JW-A5VL-01 2 219883856 219883856 G C CCDC108 Missense_Mutation p.F1173L 0.24 deleterious(0) probably_damaging(0.911) TCGA-JW-A5VL-01 2 220047707 220047707 C A FAM134A 3'UTR 0.26 TCGA-JW-A5VL-01 2 220103037 220103037 C G GLB1L Missense_Mutation p.E426Q 0.31 tolerated(0.33) benign(0.04) TCGA-JW-A5VL-01 2 220353359 220353359 C G SPEG Missense_Mutation p.I2666M 0.11 possibly_damaging(0.562) TCGA-JW-A5VL-01 2 220357648 220357648 C G SPEG 3'UTR 0.29 TCGA-JW-A5VL-01 2 220397701 220397701 C G ASIC4 Intron 0.34 TCGA-JW-A5VL-01 2 220405172 220405172 C T CHPF Missense_Mutation p.D421N 0.30 deleterious(0) probably_damaging(0.948) TCGA-JW-A5VL-01 2 220497723 220497723 G A SLC4A3 Silent p.L450L 0.24 TCGA-JW-A5VL-01 2 222283737 222283737 C G EPHA4 3'UTR 0.26 TCGA-JW-A5VL-01 2 222307658 222307658 C T EPHA4 Silent p.L655L 0.24 TCGA-JW-A5VL-01 2 223789179 223789179 C T ACSL3 Silent p.I386I 0.75 TCGA-JW-A5VL-01 2 233245707 233245707 C G ALPP Missense_Mutation p.F386L 0.50 tolerated(0.13) probably_damaging(0.949) TCGA-JW-A5VL-01 2 233748699 233748699 C T NGEF Silent p.Q531Q 0.71 TCGA-JW-A5VL-01 2 234590793 234590793 G A UGT1A7 Silent p.L70L 0.71 TCGA-JW-A5VL-01 2 237396739 237396739 C T IQCA1 Missense_Mutation p.M184I 0.72 deleterious(0.01) benign(0.41) TCGA-JW-A5VL-01 2 237489360 237489360 G C ACKR3 Missense_Mutation p.L84F 0.66 tolerated(0.21) benign(0.052) TCGA-JW-A5VL-01 2 238261167 238261167 G T COL6A3 Silent p.R2251R 0.77 TCGA-JW-A5VL-01 2 238436082 238436082 G C MLPH Missense_Mutation p.D315H 0.77 deleterious(0) possibly_damaging(0.515) TCGA-JW-A5VL-01 2 238659879 238659879 G C LRRFIP1 Missense_Mutation p.E150Q 0.62 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 2 238671302 238671302 G C LRRFIP1 Missense_Mutation p.E316Q 0.66 deleterious(0.04) probably_damaging(0.944) TCGA-JW-A5VL-01 2 240048391 240048391 C T HDAC4 Intron 0.68 TCGA-JW-A5VL-01 2 241925417 241925417 C G AC104809.2 RNA 0.75 TCGA-JW-A5VL-01 2 241969734 241969734 G C SNED1 Missense_Mutation p.E83Q 0.60 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 2 242168950 242168950 G A HDLBP 3'UTR 0.38 TCGA-JW-A5VL-01 2 242168993 242168993 G C HDLBP 3'UTR 0.53 TCGA-JW-A5VL-01 2 242651410 242651410 G C ING5 Missense_Mutation p.E136Q 0.60 tolerated(0.06) benign(0.216) TCGA-JW-A5VL-01 2 242695372 242695372 G A D2HGDH Missense_Mutation p.D417N 0.67 deleterious(0.03) possibly_damaging(0.601) TCGA-JW-A5VL-01 2 25315919 25315919 C G EFR3B Silent p.L44L 0.35 TCGA-JW-A5VL-01 2 25360369 25360369 C G EFR3B Missense_Mutation p.Q574E 0.46 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VL-01 2 26534593 26534593 G A GPR113 Missense_Mutation p.S668L 0.38 tolerated(0.16) benign(0.446) TCGA-JW-A5VL-01 2 26534708 26534708 G A GPR113 Missense_Mutation p.R630W 0.28 tolerated(0.15) benign(0.002) TCGA-JW-A5VL-01 2 27150209 27150209 G A DPYSL5 Missense_Mutation p.R170Q 0.51 tolerated(0.16) possibly_damaging(0.532) TCGA-JW-A5VL-01 2 27169819 27169819 C T DPYSL5 Missense_Mutation p.R551W 0.42 deleterious(0) probably_damaging(0.993) TCGA-JW-A5VL-01 2 27375574 27375574 C T TCF23 Missense_Mutation p.R162C 0.39 deleterious(0) possibly_damaging(0.908) TCGA-JW-A5VL-01 2 27435216 27435216 G A ATRAID Missense_Mutation p.G49R 0.48 tolerated_low_confidence(0.59) probably_damaging(0.98) TCGA-JW-A5VL-01 2 27717491 27717491 G A FNDC4 Missense_Mutation p.S19L 0.45 tolerated_low_confidence(0.43) benign(0.002) TCGA-JW-A5VL-01 2 27886431 27886431 G A SLC4A1AP 5'UTR 0.60 TCGA-JW-A5VL-01 2 28113742 28113742 G C RBKS 5'UTR 0.45 TCGA-JW-A5VL-01 2 29023102 29023102 T C PPP1CB 3'UTR 0.15 TCGA-JW-A5VL-01 2 29147999 29147999 C T WDR43 Nonsense_Mutation p.Q356* 0.39 TCGA-JW-A5VL-01 2 29287322 29287322 C T C2orf71 3'UTR 0.28 TCGA-JW-A5VL-01 2 29543716 29543716 C G ALK Missense_Mutation p.E483Q 0.56 deleterious(0.02) benign(0.39) TCGA-JW-A5VL-01 2 30748456 30748456 C T LCLAT1 Silent p.I38I 0.50 TCGA-JW-A5VL-01 2 31423341 31423341 G C CAPN14 Silent p.L234L 0.39 TCGA-JW-A5VL-01 2 31751095 31751095 G C AL133247.2 5'Flank 0.25 TCGA-JW-A5VL-01 2 32481919 32481919 G A NLRC4 5'UTR 0.44 TCGA-JW-A5VL-01 2 32605237 32605237 C T BIRC6 Missense_Mutation p.S175L 0.34 benign(0.014) TCGA-JW-A5VL-01 2 32605301 32605301 C G BIRC6 Silent p.L196L 0.46 TCGA-JW-A5VL-01 2 33534509 33534509 G A LTBP1 Missense_Mutation p.E1164K 0.35 deleterious(0.01) possibly_damaging(0.764) TCGA-JW-A5VL-01 2 3727551 3727551 C G ALLC Missense_Mutation p.R89G 0.43 deleterious(0.04) benign(0.249) TCGA-JW-A5VL-01 2 37376362 37376362 G A EIF2AK2 Intron 0.43 TCGA-JW-A5VL-01 2 39479017 39479017 C A MAP4K3 Nonsense_Mutation p.E851* 0.34 TCGA-JW-A5VL-01 2 40340896 40340896 G C SLC8A1 3'Flank 0.26 TCGA-JW-A5VL-01 2 40657143 40657143 G C SLC8A1 Missense_Mutation p.S93C 0.44 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 2 48050303 48050303 G C FBXO11 Nonsense_Mutation p.S532* 0.32 TCGA-JW-A5VL-01 2 54858188 54858188 G A SPTBN1 Missense_Mutation p.E1002K 0.31 deleterious(0) possibly_damaging(0.883) TCGA-JW-A5VL-01 2 54872363 54872363 C G SPTBN1 Intron 0.30 TCGA-JW-A5VL-01 2 56403137 56403137 C G RP11-481J13.1 Intron 0.39 TCGA-JW-A5VL-01 2 5833067 5833067 C G SOX11 Missense_Mutation p.P72A 0.45 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 2 60987275 60987275 C T PAPOLG Silent p.T8T 0.37 TCGA-JW-A5VL-01 2 62733356 62733356 G C TMEM17 5'UTR 0.38 TCGA-JW-A5VL-01 2 64779560 64779560 C G AFTPH Missense_Mutation p.P318A 0.50 tolerated(0.41) benign(0.001) TCGA-JW-A5VL-01 2 65299104 65299104 C G CEP68 Missense_Mutation p.L292V 0.42 tolerated(0.08) possibly_damaging(0.539) TCGA-JW-A5VL-01 2 65305035 65305035 C G CEP68 Missense_Mutation p.L681V 0.42 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 2 69093120 69093120 G A BMP10 Silent p.I306I 0.43 TCGA-JW-A5VL-01 2 69664414 69664414 G C NFU1 Intron 0.78 TCGA-JW-A5VL-01 2 70168059 70168059 C G MXD1 3'UTR 0.36 TCGA-JW-A5VL-01 2 70680384 70680384 C T TGFA Silent p.L147L 0.38 TCGA-JW-A5VL-01 2 70904899 70904899 C A ADD2 Missense_Mutation p.M498I 0.38 tolerated(0.19) benign(0.155) TCGA-JW-A5VL-01 2 74425838 74425838 C G MTHFD2 Missense_Mutation p.R24G 0.45 tolerated(0.23) benign(0.002) TCGA-JW-A5VL-01 2 74652559 74652559 G T WDR54 Nonsense_Mutation p.E272* 0.43 TCGA-JW-A5VL-01 2 74718736 74718736 G A TTC31 Silent p.K271K 0.37 TCGA-JW-A5VL-01 2 74779786 74779786 G C LOXL3 Intron 0.32 TCGA-JW-A5VL-01 2 74902651 74902651 G C SEMA4F Splice_Site p.X458_splice 0.51 TCGA-JW-A5VL-01 2 79255446 79255446 C G REG3G 3'UTR 0.50 TCGA-JW-A5VL-01 2 79255483 79255483 G A REG3G 3'UTR 0.27 TCGA-JW-A5VL-01 2 80875142 80875142 G C CTNNA2 3'UTR 0.19 TCGA-JW-A5VL-01 2 84848475 84848475 C G DNAH6 Missense_Mutation p.S1318C 0.31 deleterious(0) possibly_damaging(0.664) TCGA-JW-A5VL-01 2 85766323 85766323 G C MAT2A 5'UTR 0.53 TCGA-JW-A5VL-01 2 85838864 85838864 C G C2orf68 Silent p.V51V 0.24 TCGA-JW-A5VL-01 2 86697389 86697389 G A KDM3A Missense_Mutation p.E528K 0.40 deleterious(0) benign(0.355) TCGA-JW-A5VL-01 2 86831217 86831217 C G RNF103 Missense_Mutation p.D603H 0.36 tolerated(0.05) benign(0.014) TCGA-JW-A5VL-01 2 8822502 8822502 C T ID2 Silent p.I69I 0.31 TCGA-JW-A5VL-01 2 8873633 8873633 C G KIDINS220 Missense_Mutation p.E1332Q 0.48 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-JW-A5VL-01 2 88856938 88856938 C G EIF2AK3 3'UTR 0.44 TCGA-JW-A5VL-01 2 9554375 9554375 G C ITGB1BP1 Missense_Mutation p.S28C 0.54 tolerated(0.12) unknown(0) TCGA-JW-A5VL-01 2 96265202 96265202 G C TRIM43 Missense_Mutation p.D408H 0.20 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VL-01 2 96920718 96920718 G C TMEM127 Missense_Mutation p.Q88E 0.38 tolerated(0.19) benign(0.248) TCGA-JW-A5VL-01 2 97351704 97351704 G C FER1L5 RNA 0.43 TCGA-JW-A5VL-01 2 98275838 98275838 G A ACTR1B Nonsense_Mutation p.Q98* 0.38 TCGA-JW-A5VL-01 3 100295885 100295885 C G TMEM45A 3'UTR 0.20 TCGA-JW-A5VL-01 3 100451391 100451391 C T TFG Missense_Mutation p.S152F 0.12 tolerated(0.07) benign(0.005) TCGA-JW-A5VL-01 3 101572421 101572421 G C NFKBIZ Missense_Mutation p.E351Q 0.18 tolerated_low_confidence(0.09) benign(0.081) TCGA-JW-A5VL-01 3 10168305 10168305 C G BRK1 3'UTR 0.47 TCGA-JW-A5VL-01 3 107762491 107762491 C G CD47 3'Flank 0.19 TCGA-JW-A5VL-01 3 108047124 108047124 G C HHLA2 5'UTR 0.16 TCGA-JW-A5VL-01 3 108107819 108107819 G C MYH15 Missense_Mutation p.Q1865E 0.23 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VL-01 3 108392964 108392964 C A DZIP3 Missense_Mutation p.H877N 0.26 tolerated(0.2) possibly_damaging(0.791) TCGA-JW-A5VL-01 3 109056348 109056348 G C DPPA4 Missense_Mutation p.A6G 0.15 tolerated_low_confidence(0.46) benign(0) TCGA-JW-A5VL-01 3 110837554 110837554 G T PVRL3 Missense_Mutation p.G185V 0.29 deleterious(0) possibly_damaging(0.516) TCGA-JW-A5VL-01 3 110863797 110863797 G C PVRL3 Missense_Mutation p.G351A 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-JW-A5VL-01 3 111264108 111264108 G T CD96 Nonsense_Mutation p.E93* 0.18 TCGA-JW-A5VL-01 3 111313823 111313823 G C ZBED2 5'UTR 0.31 TCGA-JW-A5VL-01 3 111785331 111785331 G A TMPRSS7 Missense_Mutation p.E424K 0.33 deleterious(0) probably_damaging(0.986) TCGA-JW-A5VL-01 3 111795803 111795803 G A TMPRSS7 Missense_Mutation p.R553K 0.21 deleterious(0.01) benign(0.26) TCGA-JW-A5VL-01 3 112066545 112066545 C G CD200 Missense_Mutation p.H213D 0.16 tolerated(0.07) benign(0.037) TCGA-JW-A5VL-01 3 112185007 112185007 C T BTLA Missense_Mutation p.R273K 0.21 tolerated(0.14) possibly_damaging(0.757) TCGA-JW-A5VL-01 3 112724777 112724777 G C C3orf17 Nonsense_Mutation p.S437* 0.25 TCGA-JW-A5VL-01 3 113063421 113063421 G C WDR52 Missense_Mutation p.S1068R 0.21 deleterious(0.04) possibly_damaging(0.899) TCGA-JW-A5VL-01 3 113063537 113063537 C G WDR52 Missense_Mutation p.D1030H 0.22 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VL-01 3 113439268 113439268 C G NAA50 3'UTR 0.23 TCGA-JW-A5VL-01 3 113507617 113507617 G A ATP6V1A Silent p.V258V 0.29 TCGA-JW-A5VL-01 3 113601661 113601661 G A GRAMD1C Silent p.Q174Q 0.24 TCGA-JW-A5VL-01 3 113804755 113804755 C T QTRTD1 3'UTR 0.20 TCGA-JW-A5VL-01 3 113850143 113850143 C G DRD3 Missense_Mutation p.L276F 0.18 tolerated(0.71) benign(0.252) TCGA-JW-A5VL-01 3 114057933 114057933 G A ZBTB20 Silent p.Y715Y 0.21 TCGA-JW-A5VL-01 3 114069347 114069347 G C ZBTB20 Missense_Mutation p.F526L 0.25 tolerated(0.08) possibly_damaging(0.827) TCGA-JW-A5VL-01 3 118647442 118647442 G C IGSF11 Nonsense_Mutation p.S113* 0.16 TCGA-JW-A5VL-01 3 119244440 119244440 G C CD80 3'UTR 0.48 TCGA-JW-A5VL-01 3 119244492 119244492 G A CD80 3'UTR 0.28 TCGA-JW-A5VL-01 3 119244554 119244554 G C CD80 3'UTR 0.34 TCGA-JW-A5VL-01 3 119526272 119526272 G A NR1I2 Missense_Mutation p.E98K 0.21 deleterious(0.01) probably_damaging(0.923) TCGA-JW-A5VL-01 3 119962888 119962888 C T GPR156 Missense_Mutation p.D20N 0.28 tolerated(0.17) possibly_damaging(0.632) TCGA-JW-A5VL-01 3 120973794 120973794 G A STXBP5L Silent p.Q498Q 0.26 TCGA-JW-A5VL-01 3 121208673 121208673 C G POLQ Missense_Mutation p.M1035I 0.24 tolerated_low_confidence(0.24) benign(0.003) TCGA-JW-A5VL-01 3 121345634 121345634 C G FBXO40 Missense_Mutation p.F669L 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-JW-A5VL-01 3 121415989 121415989 G C GOLGB1 Missense_Mutation p.I1127M 0.28 probably_damaging(0.987) TCGA-JW-A5VL-01 3 121435699 121435699 C G GOLGB1 Missense_Mutation p.K391N 0.32 possibly_damaging(0.667) TCGA-JW-A5VL-01 3 121648193 121648193 G C SLC15A2 Silent p.V517V 0.24 TCGA-JW-A5VL-01 3 121741028 121741028 C T ILDR1 5'UTR 0.23 TCGA-JW-A5VL-01 3 121980728 121980728 G C CASR Missense_Mutation p.E282D 0.12 deleterious(0.04) probably_damaging(0.976) TCGA-JW-A5VL-01 3 121980771 121980771 G A CASR Missense_Mutation p.E297K 0.13 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 3 122003100 122003100 G A CASR Missense_Mutation p.E777K 0.18 deleterious(0.03) probably_damaging(0.977) TCGA-JW-A5VL-01 3 122186234 122186234 C G KPNA1 Missense_Mutation p.E58Q 0.22 tolerated(0.37) benign(0.105) TCGA-JW-A5VL-01 3 122447317 122447317 C G PARP14 Nonsense_Mutation p.S1760* 0.16 TCGA-JW-A5VL-01 3 122821309 122821309 G A PDIA5 Silent p.P103P 0.25 TCGA-JW-A5VL-01 3 122865098 122865098 G A PDIA5 Nonsense_Mutation p.W378* 0.11 TCGA-JW-A5VL-01 3 123699071 123699071 C G ROPN1 Intron 0.27 TCGA-JW-A5VL-01 3 123987683 123987683 G C KALRN Missense_Mutation p.E182Q 0.12 tolerated(0.51) probably_damaging(0.976) TCGA-JW-A5VL-01 3 124303592 124303592 G A KALRN 5'UTR 0.26 TCGA-JW-A5VL-01 3 124369774 124369774 G A KALRN Silent p.L19L 0.15 TCGA-JW-A5VL-01 3 125635577 125635577 G A FAM86JP RNA 0.29 TCGA-JW-A5VL-01 3 125822455 125822455 C T ALDH1L1 3'UTR 0.08 TCGA-JW-A5VL-01 3 126138978 126138978 C G CCDC37 Missense_Mutation p.L330V 0.25 tolerated(0.08) benign(0.164) TCGA-JW-A5VL-01 3 126142171 126142171 G A CCDC37 Silent p.S362S 0.20 TCGA-JW-A5VL-01 3 126180336 126180336 G C ZXDC Intron 0.16 TCGA-JW-A5VL-01 3 126755893 126755893 G A PLXNA1 3'UTR 0.22 TCGA-JW-A5VL-01 3 127327821 127327821 G A MCM2 Silent p.V461V 0.19 TCGA-JW-A5VL-01 3 128200129 128200129 C T GATA2 Silent p.G392G 0.24 TCGA-JW-A5VL-01 3 128341190 128341190 G C RPN1 Silent p.V486V 0.23 TCGA-JW-A5VL-01 3 128345602 128345602 C T RPN1 Silent p.V370V 0.26 TCGA-JW-A5VL-01 3 12856710 12856710 C T CAND2 Silent p.I359I 0.37 TCGA-JW-A5VL-01 3 128696936 128696936 G A KIAA1257 Missense_Mutation p.P254S 0.26 tolerated(0.14) benign(0.022) TCGA-JW-A5VL-01 3 128849028 128849028 C T ISY1 Missense_Mutation p.E274K 0.19 deleterious(0.03) possibly_damaging(0.7) TCGA-JW-A5VL-01 3 128990687 128990687 G A COPG1 Missense_Mutation p.E641K 0.22 deleterious(0) probably_damaging(0.987) TCGA-JW-A5VL-01 3 128996333 128996333 G T COPG1 3'UTR 0.37 TCGA-JW-A5VL-01 3 129111991 129111991 C G SNORA7B 3'Flank 0.21 TCGA-JW-A5VL-01 3 129284273 129284273 C T PLXND1 Silent p.K1477K 0.17 TCGA-JW-A5VL-01 3 12977058 12977058 G A IQSEC1 Silent p.L500L 0.08 TCGA-JW-A5VL-01 3 130203571 130203571 G A COL6A5 3'UTR 0.21 TCGA-JW-A5VL-01 3 130720651 130720651 G A ATP2C1 Intron 0.19 TCGA-JW-A5VL-01 3 132172997 132172997 G C DNAJC13 Missense_Mutation p.E310Q 0.24 deleterious(0.02) benign(0.028) TCGA-JW-A5VL-01 3 133374143 133374143 C T TOPBP1 Missense_Mutation p.E245K 0.29 deleterious(0.04) possibly_damaging(0.719) TCGA-JW-A5VL-01 3 134085242 134085242 C T AMOTL2 Missense_Mutation p.E357K 0.19 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 3 134278115 134278115 G A CEP63 Silent p.L599L 0.24 TCGA-JW-A5VL-01 3 135870318 135870318 G C MSL2 Missense_Mutation p.Q469E 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-JW-A5VL-01 3 136323236 136323236 C G STAG1 Missense_Mutation p.R71T 0.16 tolerated(0.06) benign(0.058) TCGA-JW-A5VL-01 3 136581125 136581125 C T NCK1 5'UTR 0.22 TCGA-JW-A5VL-01 3 13669378 13669378 C T FBLN2 Silent p.F826F 0.37 TCGA-JW-A5VL-01 3 137783500 137783500 C T DZIP1L Silent p.Q704Q 0.28 TCGA-JW-A5VL-01 3 138119446 138119446 G C MRAS Missense_Mutation p.R173T 0.21 deleterious(0) probably_damaging(0.99) TCGA-JW-A5VL-01 3 138248112 138248112 G C CEP70 Silent p.L266L 0.21 TCGA-JW-A5VL-01 3 138329875 138329875 C G FAIM Missense_Mutation p.L26V 0.25 tolerated_low_confidence(0.19) benign(0.006) TCGA-JW-A5VL-01 3 138665213 138665213 C T FOXL2 Missense_Mutation p.E118K 0.26 deleterious(0) possibly_damaging(0.874) TCGA-JW-A5VL-01 3 138738560 138738560 C G PRR23B 3'UTR 0.24 TCGA-JW-A5VL-01 3 139081296 139081296 G A COPB2 Nonsense_Mutation p.Q650* 0.09 TCGA-JW-A5VL-01 3 140692697 140692697 G C SLC25A36 Missense_Mutation p.E198Q 0.16 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 3 141292835 141292835 C G RASA2 Nonsense_Mutation p.S470* 0.22 TCGA-JW-A5VL-01 3 141535812 141535812 G A GRK7 Missense_Mutation p.E528K 0.20 tolerated(1) benign(0.016) TCGA-JW-A5VL-01 3 141877319 141877319 G A RP11-485G4.2 RNA 0.13 TCGA-JW-A5VL-01 3 141905084 141905084 G A GK5 Missense_Mutation p.S236F 0.21 tolerated(0.31) benign(0.049) TCGA-JW-A5VL-01 3 142189021 142189021 G C ATR Missense_Mutation p.L2076V 0.23 deleterious(0) probably_damaging(0.983) TCGA-JW-A5VL-01 3 142561848 142561848 G A PCOLCE2 Missense_Mutation p.S164F 0.14 deleterious(0.04) benign(0.151) TCGA-JW-A5VL-01 3 142681903 142681903 G A PAQR9 Silent p.I92I 0.22 TCGA-JW-A5VL-01 3 142681918 142681918 G A PAQR9 Silent p.F87F 0.20 TCGA-JW-A5VL-01 3 142841218 142841218 C G CHST2 Silent p.L520L 0.33 TCGA-JW-A5VL-01 3 143515691 143515691 G C SLC9A9 Missense_Mutation p.H145D 0.17 deleterious(0.01) benign(0.289) TCGA-JW-A5VL-01 3 143691757 143691757 C T C3orf58 Missense_Mutation p.R195C 0.46 deleterious(0) possibly_damaging(0.648) TCGA-JW-A5VL-01 3 14731503 14731503 G C C3orf20 Splice_Site p.X209_splice 0.42 TCGA-JW-A5VL-01 3 148778607 148778607 G C HLTF Nonsense_Mutation p.S400* 0.12 TCGA-JW-A5VL-01 3 149683513 149683513 G C PFN2 3'UTR 0.32 TCGA-JW-A5VL-01 3 150262167 150262167 C T SERP1 3'UTR 0.25 TCGA-JW-A5VL-01 3 150264007 150264007 C G SERP1 5'UTR 0.24 TCGA-JW-A5VL-01 3 150344932 150344932 C T SELT 3'UTR 0.26 TCGA-JW-A5VL-01 3 15062306 15062306 C T NR2C2 Silent p.F160F 0.42 TCGA-JW-A5VL-01 3 150690496 150690496 G A CLRN1 5'Flank 0.17 TCGA-JW-A5VL-01 3 15079634 15079634 C G NR2C2 Silent p.L519L 0.42 TCGA-JW-A5VL-01 3 151164886 151164886 C G IGSF10 Silent p.V961V 0.19 TCGA-JW-A5VL-01 3 152058711 152058711 C T TMEM14E 5'UTR 0.14 TCGA-JW-A5VL-01 3 154024010 154024010 G T DHX36 Silent p.L296L 0.29 TCGA-JW-A5VL-01 3 154147176 154147176 C T GPR149 Missense_Mutation p.D77N 0.22 deleterious(0.01) probably_damaging(1) TCGA-JW-A5VL-01 3 155203943 155203943 G C PLCH1 Missense_Mutation p.A879G 0.16 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-JW-A5VL-01 3 156175293 156175293 G C KCNAB1 Missense_Mutation p.D137H 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-JW-A5VL-01 3 156642386 156642386 G C LEKR1 3'UTR 0.33 TCGA-JW-A5VL-01 3 158386883 158386883 G A LXN Silent p.L137L 0.13 TCGA-JW-A5VL-01 3 160146645 160146645 G A SMC4 Missense_Mutation p.D904N 0.22 deleterious(0.04) benign(0.02) TCGA-JW-A5VL-01 3 160285940 160285940 C G KPNA4 5'Flank 0.24 TCGA-JW-A5VL-01 3 16306188 16306188 G A DPH3 Intron 0.51 TCGA-JW-A5VL-01 3 16633616 16633616 G C DAZL Missense_Mutation p.L279V 0.38 tolerated(0.11) possibly_damaging(0.849) TCGA-JW-A5VL-01 3 167422648 167422648 C T PDCD10 Silent p.L44L 0.32 TCGA-JW-A5VL-01 3 167512530 167512530 C G SERPINI1 Missense_Mutation p.L267V 0.27 tolerated(0.51) benign(0.324) TCGA-JW-A5VL-01 3 169486122 169486122 C T ACTRT3 Missense_Mutation p.G73S 0.32 deleterious(0.02) benign(0.263) TCGA-JW-A5VL-01 3 169587570 169587570 G A LRRC31 Missense_Mutation p.S9F 0.24 tolerated(0.05) possibly_damaging(0.77) TCGA-JW-A5VL-01 3 169888975 169888975 C G PHC3 Intron 0.29 TCGA-JW-A5VL-01 3 169953073 169953073 G C PRKCI Missense_Mutation p.E53Q 0.22 tolerated(0.11) benign(0.27) TCGA-JW-A5VL-01 3 170011255 170011255 C T PRKCI Missense_Mutation p.S459F 0.25 tolerated(0.06) possibly_damaging(0.844) TCGA-JW-A5VL-01 3 170079084 170079084 C G SKIL Nonsense_Mutation p.S322* 0.21 TCGA-JW-A5VL-01 3 17053435 17053435 G A PLCL2 Missense_Mutation p.G740E 0.53 deleterious(0) probably_damaging(0.993) TCGA-JW-A5VL-01 3 170716153 170716153 C G SLC2A2 Missense_Mutation p.M401I 0.24 tolerated(1) possibly_damaging(0.877) TCGA-JW-A5VL-01 3 170928992 170928992 C T TNIK Silent p.L73L 0.26 TCGA-JW-A5VL-01 3 171453323 171453323 G C PLD1 Silent p.L131L 0.14 TCGA-JW-A5VL-01 3 172052756 172052757 - A FNDC3B Frame_Shift_Ins p.S557Kfs*14 0.20 TCGA-JW-A5VL-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.26 deleterious(0.02) probably_damaging(0.959) TCGA-JW-A5VL-01 3 179294466 179294466 C G ACTL6A Missense_Mutation p.F210L 0.20 tolerated(1) benign(0.028) TCGA-JW-A5VL-01 3 179399720 179399720 G A USP13 Missense_Mutation p.E75K 0.21 tolerated(0.47) benign(0.023) TCGA-JW-A5VL-01 3 180666275 180666275 G C FXR1 Missense_Mutation p.L137F 0.12 deleterious(0) possibly_damaging(0.721) TCGA-JW-A5VL-01 3 180685897 180685897 G C FXR1 Silent p.L419L 0.23 TCGA-JW-A5VL-01 3 183273245 183273245 C T KLHL6 Missense_Mutation p.R66Q 0.28 deleterious(0.03) probably_damaging(0.934) TCGA-JW-A5VL-01 3 183476669 183476669 C T YEATS2 Silent p.I524I 0.15 TCGA-JW-A5VL-01 3 183685504 183685504 G C ABCC5 Silent p.L604L 0.21 TCGA-JW-A5VL-01 3 183756156 183756156 G A HTR3D Splice_Site p.X294_splice 0.24 TCGA-JW-A5VL-01 3 18390057 18390057 G A SATB1 3'UTR 0.43 TCGA-JW-A5VL-01 3 184001666 184001666 G A ECE2 Missense_Mutation p.E422K 0.18 tolerated(0.12) possibly_damaging(0.684) TCGA-JW-A5VL-01 3 184071526 184071526 G C CLCN2 Silent p.L593L 0.25 TCGA-JW-A5VL-01 3 184090438 184090438 G A THPO Missense_Mutation p.L309F 0.32 deleterious_low_confidence(0.01) benign(0.068) TCGA-JW-A5VL-01 3 184295250 184295250 G C EPHB3 Missense_Mutation p.E492Q 0.18 deleterious(0.02) benign(0.256) TCGA-JW-A5VL-01 3 184429175 184429175 C T MAGEF1 Silent p.L145L 0.19 TCGA-JW-A5VL-01 3 184797742 184797742 C G C3orf70 3'UTR 0.20 TCGA-JW-A5VL-01 3 184971666 184971666 C G EHHADH Intron 0.18 TCGA-JW-A5VL-01 3 185344103 185344103 G C SENP2 Silent p.L543L 0.19 TCGA-JW-A5VL-01 3 185906061 185906061 C G DGKG Missense_Mutation p.K675N 0.19 deleterious(0.03) probably_damaging(0.969) TCGA-JW-A5VL-01 3 186358435 186358435 G C FETUB Silent p.L62L 0.25 TCGA-JW-A5VL-01 3 186917904 186917904 G C RTP1 3'UTR 0.15 TCGA-JW-A5VL-01 3 187447542 187447542 C T BCL6 Silent p.R217R 0.21 TCGA-JW-A5VL-01 3 188592179 188592179 G A LPP Missense_Mutation p.C584Y 0.20 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 3 189586483 189586483 G C TP63 Missense_Mutation p.K369N 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-JW-A5VL-01 3 189690765 189690765 C T LEPREL1 Missense_Mutation p.D533N 0.17 tolerated(0.49) benign(0.005) TCGA-JW-A5VL-01 3 190127773 190127773 C G CLDN16 Nonsense_Mutation p.S289* 0.23 TCGA-JW-A5VL-01 3 190322170 190322170 C G IL1RAP Silent p.L106L 0.30 TCGA-JW-A5VL-01 3 190367481 190367481 G C IL1RAP Intron 0.26 TCGA-JW-A5VL-01 3 190374011 190374011 C G IL1RAP Missense_Mutation p.S560C 0.24 deleterious(0.01) probably_damaging(1) TCGA-JW-A5VL-01 3 192515751 192515751 C T MB21D2 3'UTR 0.16 TCGA-JW-A5VL-01 3 192635560 192635560 C T MB21D2 Missense_Mutation p.E24K 0.19 tolerated(0.17) benign(0.005) TCGA-JW-A5VL-01 3 193032821 193032821 C G ATP13A5 Missense_Mutation p.E700Q 0.23 deleterious(0.02) probably_damaging(1) TCGA-JW-A5VL-01 3 193174915 193174915 G A ATP13A4 Missense_Mutation p.H597Y 0.25 tolerated(0.12) possibly_damaging(0.723) TCGA-JW-A5VL-01 3 194344315 194344315 C T TMEM44 Silent p.P156P 0.19 TCGA-JW-A5VL-01 3 195295724 195295724 G A APOD 3'UTR 0.29 TCGA-JW-A5VL-01 3 195453117 195453117 G T MUC20 Missense_Mutation p.G548V 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-JW-A5VL-01 3 195507967 195507967 G A MUC4 Missense_Mutation p.S3495F 0.06 possibly_damaging(0.618) TCGA-JW-A5VL-01 3 195508612 195508612 G A MUC4 Missense_Mutation p.S3280F 0.07 benign(0.015) TCGA-JW-A5VL-01 3 195509548 195509548 G C MUC4 Nonsense_Mutation p.S2968* 0.12 TCGA-JW-A5VL-01 3 195509618 195509618 G A MUC4 Missense_Mutation p.L2945F 0.10 possibly_damaging(0.865) TCGA-JW-A5VL-01 3 195509644 195509644 G A MUC4 Missense_Mutation p.S2936L 0.15 benign(0.044) TCGA-JW-A5VL-01 3 195509706 195509706 G A MUC4 Silent p.V2915V 0.09 TCGA-JW-A5VL-01 3 195509762 195509762 G A MUC4 Missense_Mutation p.L2897F 0.10 possibly_damaging(0.865) TCGA-JW-A5VL-01 3 195509920 195509920 C T MUC4 Missense_Mutation p.G2844D 0.13 benign(0.072) TCGA-JW-A5VL-01 3 195510191 195510191 G A MUC4 Missense_Mutation p.P2754S 0.06 benign(0.001) TCGA-JW-A5VL-01 3 195510796 195510796 G A MUC4 Missense_Mutation p.S2552L 0.09 probably_damaging(0.937) TCGA-JW-A5VL-01 3 195511826 195511826 G A MUC4 Missense_Mutation p.L2209F 0.07 unknown(0) TCGA-JW-A5VL-01 3 195512853 195512853 G A MUC4 Silent p.S1866S 0.09 TCGA-JW-A5VL-01 3 195513244 195513244 G C MUC4 Nonsense_Mutation p.S1736* 0.10 TCGA-JW-A5VL-01 3 195513266 195513266 G A MUC4 Missense_Mutation p.L1729F 0.09 possibly_damaging(0.768) TCGA-JW-A5VL-01 3 195513554 195513554 G C MUC4 Missense_Mutation p.L1633V 0.10 possibly_damaging(0.753) TCGA-JW-A5VL-01 3 195513599 195513599 G C MUC4 Missense_Mutation p.P1618A 0.03 possibly_damaging(0.862) TCGA-JW-A5VL-01 3 195935261 195935261 G C ZDHHC19 Missense_Mutation p.I193M 0.22 tolerated(0.42) benign(0.016) TCGA-JW-A5VL-01 3 196043031 196043031 G C TCTEX1D2 Missense_Mutation p.S62C 0.25 deleterious(0.05) benign(0.021) TCGA-JW-A5VL-01 3 196088738 196088738 G A UBXN7 Missense_Mutation p.L429F 0.27 tolerated(0.26) possibly_damaging(0.816) TCGA-JW-A5VL-01 3 196210737 196210737 G A RNF168 Missense_Mutation p.S195L 0.32 tolerated(1) benign(0) TCGA-JW-A5VL-01 3 196438907 196438907 G C CEP19 5'UTR 0.21 TCGA-JW-A5VL-01 3 196453621 196453621 G C PIGX Intron 0.10 TCGA-JW-A5VL-01 3 196528862 196528862 C T PAK2 Silent p.I84I 0.31 TCGA-JW-A5VL-01 3 196612055 196612055 G C SENP5 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-JW-A5VL-01 3 196658119 196658119 G C SENP5 3'UTR 0.21 TCGA-JW-A5VL-01 3 196674919 196674919 G T PIGZ Silent p.P283P 0.23 TCGA-JW-A5VL-01 3 197239047 197239047 C T BDH1 Missense_Mutation p.E251K 0.26 deleterious(0.03) possibly_damaging(0.493) TCGA-JW-A5VL-01 3 197408081 197408081 C G KIAA0226 Missense_Mutation p.K783N 0.18 deleterious(0) probably_damaging(0.954) TCGA-JW-A5VL-01 3 197408162 197408162 C G KIAA0226 Missense_Mutation p.M756I 0.17 deleterious(0.01) benign(0.063) TCGA-JW-A5VL-01 3 197410221 197410221 G A KIAA0226 Missense_Mutation p.S646L 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-JW-A5VL-01 3 197510276 197510276 C T FYTTD1 3'UTR 0.24 TCGA-JW-A5VL-01 3 197574839 197574839 G C LRCH3 Missense_Mutation p.E493Q 0.13 tolerated(0.08) probably_damaging(0.975) TCGA-JW-A5VL-01 3 20178473 20178473 C G KAT2B Missense_Mutation p.H597D 0.42 deleterious(0.02) probably_damaging(0.99) TCGA-JW-A5VL-01 3 25683865 25683865 C G TOP2B Missense_Mutation p.D110H 0.37 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 3 25833167 25833167 C G OXSM Nonsense_Mutation p.S219* 0.40 TCGA-JW-A5VL-01 3 26752197 26752197 C T LRRC3B 3'UTR 0.49 TCGA-JW-A5VL-01 3 27343240 27343240 G C NEK10 Nonsense_Mutation p.S372* 0.35 TCGA-JW-A5VL-01 3 27493983 27493983 C T SLC4A7 Missense_Mutation p.D14N 0.40 deleterious(0.04) probably_damaging(0.993) TCGA-JW-A5VL-01 3 27758889 27758889 C T EOMES Missense_Mutation p.R578Q 0.48 deleterious(0.05) probably_damaging(0.996) TCGA-JW-A5VL-01 3 36899397 36899397 G A TRANK1 Missense_Mutation p.R562C 0.39 deleterious(0.03) possibly_damaging(0.696) TCGA-JW-A5VL-01 3 37033287 37033287 C T EPM2AIP1 Missense_Mutation p.E428K 0.23 tolerated(0.3) benign(0.421) TCGA-JW-A5VL-01 3 37056025 37056025 C T MLH1 Silent p.L260L 0.43 TCGA-JW-A5VL-01 3 37284995 37284995 C T GOLGA4 5'UTR 0.34 TCGA-JW-A5VL-01 3 37407699 37407699 G C GOLGA4 3'UTR 0.54 TCGA-JW-A5VL-01 3 37458809 37458809 G C C3orf35 Missense_Mutation p.E18Q 0.42 deleterious_low_confidence(0.02) benign(0.446) TCGA-JW-A5VL-01 3 38101276 38101276 G A DLEC1 Silent p.R202R 0.37 TCGA-JW-A5VL-01 3 38295002 38295002 C G OXSR1 3'UTR 0.34 TCGA-JW-A5VL-01 3 39555463 39555463 G C MOBP 3'UTR 0.29 TCGA-JW-A5VL-01 3 41265807 41265807 G A CTNNB1 Intron 0.44 TCGA-JW-A5VL-01 3 42299495 42299495 C G CCK 3'UTR 0.40 TCGA-JW-A5VL-01 3 42304991 42304991 C G CCK Silent p.L44L 0.36 TCGA-JW-A5VL-01 3 42305093 42305093 C T CCK Silent p.L10L 0.36 TCGA-JW-A5VL-01 3 43074109 43074109 G A FAM198A Silent p.V118V 0.52 TCGA-JW-A5VL-01 3 4354762 4354762 G A SETMAR Missense_Mutation p.E113K 0.50 tolerated_low_confidence(1) benign(0.007) TCGA-JW-A5VL-01 3 43621890 43621890 C G ANO10 Missense_Mutation p.E183Q 0.40 tolerated(0.36) benign(0.017) TCGA-JW-A5VL-01 3 44332376 44332376 G C TOPAZ1 Silent p.S1265S 0.46 TCGA-JW-A5VL-01 3 44396247 44396247 C T TCAIM 5'UTR 0.39 TCGA-JW-A5VL-01 3 44409093 44409093 G C TCAIM Missense_Mutation p.R155S 0.40 tolerated(0.74) benign(0.076) TCGA-JW-A5VL-01 3 44794861 44794861 G C KIAA1143 Missense_Mutation p.S146C 0.46 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 3 44959380 44959380 G C TGM4 3'Flank 0.40 TCGA-JW-A5VL-01 3 44959466 44959466 G A TGM4 3'Flank 0.41 TCGA-JW-A5VL-01 3 45714190 45714190 A G LIMD1 Silent p.Q550Q 0.35 TCGA-JW-A5VL-01 3 45801490 45801490 C T SLC6A20 Missense_Mutation p.M496I 0.47 deleterious(0.01) benign(0.398) TCGA-JW-A5VL-01 3 45942949 45942949 C T CCR9 Silent p.F223F 0.40 TCGA-JW-A5VL-01 3 46008803 46008803 C T FYCO1 Missense_Mutation p.D675N 0.37 tolerated(0.46) benign(0.009) TCGA-JW-A5VL-01 3 46245498 46245498 C T CCR1 Missense_Mutation p.D103N 0.40 tolerated(1) benign(0.014) TCGA-JW-A5VL-01 3 46900986 46900986 G A MYL3 Missense_Mutation p.R154C 0.50 deleterious(0) probably_damaging(0.994) TCGA-JW-A5VL-01 3 47449934 47449934 C T PTPN23 Silent p.L428L 0.57 TCGA-JW-A5VL-01 3 4747945 4747945 G A ITPR1 Missense_Mutation p.M1569I 0.51 tolerated(0.24) benign(0) TCGA-JW-A5VL-01 3 47950973 47950973 G A MAP4 Intron 0.36 TCGA-JW-A5VL-01 3 48228245 48228245 C T CDC25A Silent p.V65V 0.44 TCGA-JW-A5VL-01 3 48624494 48624494 G C COL7A1 Missense_Mutation p.Q1063E 0.36 unknown(0) TCGA-JW-A5VL-01 3 48641663 48641663 C G UQCRC1 Intron 0.40 TCGA-JW-A5VL-01 3 48955903 48955903 G C ARIH2OS Missense_Mutation p.S227W 0.33 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-JW-A5VL-01 3 48956234 48956234 G C ARIH2OS Missense_Mutation p.R117G 0.42 deleterious_low_confidence(0) benign(0.433) TCGA-JW-A5VL-01 3 49293632 49293632 G T CCDC36 Missense_Mutation p.Q234H 0.40 deleterious(0) probably_damaging(0.973) TCGA-JW-A5VL-01 3 49394958 49394958 C T GPX1 Missense_Mutation p.D159N 0.41 deleterious(0.04) possibly_damaging(0.508) TCGA-JW-A5VL-01 3 49395165 49395165 C A GPX1 Nonsense_Mutation p.E90* 0.36 TCGA-JW-A5VL-01 3 49700629 49700629 C A BSN Silent p.R3680R 0.26 TCGA-JW-A5VL-01 3 49724229 49724229 G CA MST1 Frame_Shift_Ins p.D246Gfs*13 0.28 TCGA-JW-A5VL-01 3 49756377 49756377 G C AMIGO3 Missense_Mutation p.F174L 0.45 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 3 50005788 50005788 G A RBM6 Silent p.V310V 0.28 TCGA-JW-A5VL-01 3 50005798 50005798 G A RBM6 Missense_Mutation p.E314K 0.28 tolerated(0.06) probably_damaging(0.915) TCGA-JW-A5VL-01 3 50231579 50231579 C T GNAT1 Silent p.F211F 0.37 TCGA-JW-A5VL-01 3 50325012 50325012 C T LSMEM2 3'UTR 0.47 TCGA-JW-A5VL-01 3 50403738 50403738 C G CACNA2D2 Missense_Mutation p.G897A 0.43 tolerated(0.05) possibly_damaging(0.471) TCGA-JW-A5VL-01 3 50412211 50412211 G A CACNA2D2 Silent p.F647F 0.40 TCGA-JW-A5VL-01 3 51393850 51393850 G C DOCK3 Missense_Mutation p.E1477Q 0.42 deleterious(0) possibly_damaging(0.765) TCGA-JW-A5VL-01 3 51393915 51393915 G C DOCK3 Missense_Mutation p.R1498S 0.42 tolerated(0.45) benign(0.257) TCGA-JW-A5VL-01 3 51418883 51418883 G C DOCK3 Missense_Mutation p.E1996Q 0.31 tolerated_low_confidence(0.31) benign(0.034) TCGA-JW-A5VL-01 3 51418899 51418899 G C DOCK3 Missense_Mutation p.R2001P 0.47 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-JW-A5VL-01 3 52087974 52087974 C G DUSP7 Missense_Mutation p.E312Q 0.48 tolerated(0.16) possibly_damaging(0.803) TCGA-JW-A5VL-01 3 5221505 5221505 C G ARL8B 3'UTR 0.30 TCGA-JW-A5VL-01 3 5222542 5222542 C G ARL8B 3'UTR 0.50 TCGA-JW-A5VL-01 3 52387228 52387228 C G DNAH1 Missense_Mutation p.S1046C 0.31 possibly_damaging(0.684) TCGA-JW-A5VL-01 3 52396472 52396472 G C DNAH1 Missense_Mutation p.M1683I 0.36 probably_damaging(1) TCGA-JW-A5VL-01 3 52396480 52396480 G C DNAH1 Missense_Mutation p.G1686A 0.29 probably_damaging(1) TCGA-JW-A5VL-01 3 52398683 52398683 G A DNAH1 Silent p.V1758V 0.40 TCGA-JW-A5VL-01 3 52522532 52522532 G A NISCH Silent p.L1008L 0.36 TCGA-JW-A5VL-01 3 52524734 52524734 G A NISCH Silent p.Q1209Q 0.38 TCGA-JW-A5VL-01 3 52549439 52549439 G C STAB1 Missense_Mutation p.D1289H 0.27 deleterious(0.03) benign(0.326) TCGA-JW-A5VL-01 3 52558597 52558597 G A NT5DC2 Silent p.T521T 0.29 TCGA-JW-A5VL-01 3 52562533 52562533 C T NT5DC2 Missense_Mutation p.E191K 0.35 tolerated(0.05) possibly_damaging(0.759) TCGA-JW-A5VL-01 3 52799951 52799951 G C NEK4 Missense_Mutation p.F206L 0.33 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 3 54962071 54962071 C G LRTM1 5'UTR 0.23 TCGA-JW-A5VL-01 3 55504101 55504101 G C WNT5A 3'UTR 0.42 TCGA-JW-A5VL-01 3 56173671 56173671 C G ERC2 Missense_Mutation p.E447Q 0.44 deleterious(0.01) probably_damaging(0.93) TCGA-JW-A5VL-01 3 56659007 56659007 C A FAM208A Missense_Mutation p.L1389F 0.48 deleterious(0.01) probably_damaging(0.995) TCGA-JW-A5VL-01 3 56761633 56761633 C G ARHGEF3 3'UTR 0.33 TCGA-JW-A5VL-01 3 56761680 56761680 C T ARHGEF3 3'UTR 0.33 TCGA-JW-A5VL-01 3 57582966 57582966 G C ARF4 5'UTR 0.39 TCGA-JW-A5VL-01 3 57613902 57613902 G C DENND6A 3'UTR 0.30 TCGA-JW-A5VL-01 3 57847784 57847784 G C SLMAP Missense_Mutation p.E313Q 0.39 deleterious(0.02) probably_damaging(0.986) TCGA-JW-A5VL-01 3 58510215 58510215 C G ACOX2 Missense_Mutation p.Q488H 0.35 deleterious(0.03) possibly_damaging(0.519) TCGA-JW-A5VL-01 3 58612841 58612841 C G RP11-475O23.3 Intron 0.40 TCGA-JW-A5VL-01 3 58620041 58620041 C G FAM3D Missense_Mutation p.E214Q 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-JW-A5VL-01 3 63986021 63986021 C A ATXN7 3'UTR 0.38 TCGA-JW-A5VL-01 3 69230376 69230376 G A FRMD4B Missense_Mutation p.S842L 0.42 deleterious(0.01) benign(0.342) TCGA-JW-A5VL-01 3 69230520 69230520 G C FRMD4B Nonsense_Mutation p.S794* 0.39 TCGA-JW-A5VL-01 3 69360490 69360490 C G FRMD4B Missense_Mutation p.E83Q 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-JW-A5VL-01 3 71777666 71777666 G C EIF4E3 5'Flank 0.46 TCGA-JW-A5VL-01 3 77695439 77695439 G A ROBO2 3'UTR 0.37 TCGA-JW-A5VL-01 3 77695470 77695470 G A ROBO2 3'UTR 0.39 TCGA-JW-A5VL-01 3 78680360 78680360 G C ROBO1 Missense_Mutation p.P1193A 0.43 tolerated(0.33) benign(0.137) TCGA-JW-A5VL-01 3 89468357 89468357 G A EPHA3 Missense_Mutation p.E631K 0.20 deleterious(0) probably_damaging(0.985) TCGA-JW-A5VL-01 3 9024315 9024315 C T SRGAP3 3'UTR 0.62 TCGA-JW-A5VL-01 3 93781985 93781985 G T NSUN3 Intron 0.15 TCGA-JW-A5VL-01 3 9477417 9477417 G C SETD5 Missense_Mutation p.D132H 0.47 deleterious(0) probably_damaging(0.962) TCGA-JW-A5VL-01 3 95374458 95374458 G T MTHFD2P1 RNA 0.29 TCGA-JW-A5VL-01 3 9540072 9540072 G C LHFPL4 3'Flank 0.35 TCGA-JW-A5VL-01 3 97611701 97611701 C T CRYBG3 Intron 0.22 TCGA-JW-A5VL-01 3 9783090 9783090 G C BRPF1 Missense_Mutation p.L607F 0.39 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 3 98241652 98241652 G A CLDND1 Intron 0.22 TCGA-JW-A5VL-01 3 9882239 9882239 C G RPUSD3 Missense_Mutation p.E193Q 0.37 tolerated(0.32) benign(0.344) TCGA-JW-A5VL-01 3 9882432 9882432 C T RPUSD3 Silent p.Q155Q 0.46 TCGA-JW-A5VL-01 3 99514522 99514522 G C COL8A1 Missense_Mutation p.D593H 0.24 deleterious(0.03) probably_damaging(0.919) TCGA-JW-A5VL-01 3 9974953 9974953 C G IL17RC Silent p.L684L 0.22 TCGA-JW-A5VL-01 3 99865843 99865843 G A CMSS1 Missense_Mutation p.D31N 0.10 tolerated(0.09) benign(0.003) TCGA-JW-A5VL-01 3 9987278 9987278 G A PRRT3 3'UTR 0.43 TCGA-JW-A5VL-01 4 103747823 103747823 C G UBE2D3 Intron 0.42 TCGA-JW-A5VL-01 4 104061469 104061469 G C CENPE Missense_Mutation p.Q1953E 0.30 benign(0.062) TCGA-JW-A5VL-01 4 104065773 104065773 C T CENPE Missense_Mutation p.M1620I 0.43 benign(0) TCGA-JW-A5VL-01 4 10515215 10515215 C T CLNK Missense_Mutation p.R260K 0.41 tolerated(1) benign(0.002) TCGA-JW-A5VL-01 4 106158171 106158171 C G TET2 Missense_Mutation p.I1024M 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VL-01 4 106598933 106598933 C G ARHGEF38 Missense_Mutation p.Q725E 0.44 tolerated(0.19) benign(0.128) TCGA-JW-A5VL-01 4 107237671 107237671 C G AIMP1 5'UTR 0.44 TCGA-JW-A5VL-01 4 109670544 109670544 G C ETNPPL Missense_Mutation p.F259L 0.52 deleterious(0) probably_damaging(0.96) TCGA-JW-A5VL-01 4 111553603 111553603 G T PITX2 Missense_Mutation p.S27Y 0.30 deleterious_low_confidence(0.01) benign(0.136) TCGA-JW-A5VL-01 4 113483555 113483555 G C C4orf21 Missense_Mutation p.L1557V 0.31 tolerated(0.05) possibly_damaging(0.481) TCGA-JW-A5VL-01 4 113508633 113508633 C G C4orf21 Missense_Mutation p.E1194Q 0.45 tolerated(0.25) benign(0.032) TCGA-JW-A5VL-01 4 114117523 114117523 G C ANK2 Splice_Site p.X63_splice 0.44 TCGA-JW-A5VL-01 4 114278343 114278343 G C ANK2 Missense_Mutation p.E2857Q 0.53 benign(0.055) TCGA-JW-A5VL-01 4 115749027 115749027 C T NDST4 Missense_Mutation p.R855K 0.42 tolerated(0.78) benign(0.002) TCGA-JW-A5VL-01 4 119026190 119026190 G C NDST3 Missense_Mutation p.Q333H 0.43 deleterious(0) possibly_damaging(0.557) TCGA-JW-A5VL-01 4 119239689 119239689 G C PRSS12 Missense_Mutation p.Q332E 0.41 tolerated(0.58) benign(0.005) TCGA-JW-A5VL-01 4 120416791 120416791 A - PDE5A 3'UTR 0.44 TCGA-JW-A5VL-01 4 120549699 120549699 G A PDE5A Missense_Mutation p.S43L 0.42 deleterious(0) benign(0.035) TCGA-JW-A5VL-01 4 121739636 121739636 C G PRDM5 Silent p.S174S 0.41 TCGA-JW-A5VL-01 4 122749661 122749661 C G BBS7 Splice_Site p.X596_splice 0.44 TCGA-JW-A5VL-01 4 122833186 122833186 G C TRPC3 Missense_Mutation p.I468M 0.43 tolerated(0.16) benign(0.027) TCGA-JW-A5VL-01 4 126337605 126337605 G A FAT4 Silent p.V2282V 0.41 TCGA-JW-A5VL-01 4 129191486 129191486 G C PGRMC2 3'UTR 0.46 TCGA-JW-A5VL-01 4 129773220 129773220 G A JADE1 Missense_Mutation p.E165K 0.46 tolerated(0.41) benign(0.063) TCGA-JW-A5VL-01 4 129795157 129795157 C T JADE1 3'UTR 0.34 TCGA-JW-A5VL-01 4 134071293 134071293 G A PCDH10 5'UTR 0.36 TCGA-JW-A5VL-01 4 134072556 134072556 C T PCDH10 Silent p.L421L 0.39 TCGA-JW-A5VL-01 4 13602970 13602970 C T BOD1L1 Missense_Mutation p.E1852K 0.25 probably_damaging(0.998) TCGA-JW-A5VL-01 4 138451743 138451743 C G PCDH18 Silent p.V500V 0.44 TCGA-JW-A5VL-01 4 139966097 139966097 G A CCRN4L Silent p.L255L 0.28 TCGA-JW-A5VL-01 4 140811981 140811981 G C MAML3 Missense_Mutation p.I203M 0.49 benign(0.299) TCGA-JW-A5VL-01 4 144456044 144456044 G C SMARCA5 Missense_Mutation p.D399H 0.48 deleterious(0) probably_damaging(0.987) TCGA-JW-A5VL-01 4 144456055 144456055 G C SMARCA5 Missense_Mutation p.K402N 0.43 deleterious(0) possibly_damaging(0.878) TCGA-JW-A5VL-01 4 144940464 144940464 G C GYPB 5'UTR 0.26 TCGA-JW-A5VL-01 4 146065559 146065559 G A OTUD4 Nonsense_Mutation p.Q419* 0.47 TCGA-JW-A5VL-01 4 146065567 146065567 G A OTUD4 Missense_Mutation p.S416L 0.46 tolerated(0.32) benign(0.167) TCGA-JW-A5VL-01 4 150354662 150354662 C G RP11-526A4.1 RNA 0.45 TCGA-JW-A5VL-01 4 151773069 151773069 C A LRBA Nonsense_Mutation p.E1265* 0.48 TCGA-JW-A5VL-01 4 152203456 152203456 C T PRSS48 Silent p.V124V 0.45 TCGA-JW-A5VL-01 4 154191652 154191652 C T TRIM2 Silent p.L66L 0.38 TCGA-JW-A5VL-01 4 156632252 156632252 G A GUCY1A3 Missense_Mutation p.R312K 0.20 tolerated(0.99) benign(0.005) TCGA-JW-A5VL-01 4 159789974 159789974 C G FNIP2 Missense_Mutation p.S729C 0.34 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 4 162431553 162431553 C T FSTL5 Missense_Mutation p.E446K 0.52 deleterious(0.02) possibly_damaging(0.899) TCGA-JW-A5VL-01 4 164272489 164272489 C T NPY5R Missense_Mutation p.S355F 0.45 deleterious(0.01) probably_damaging(0.954) TCGA-JW-A5VL-01 4 16503518 16503518 C G LDB2 3'UTR 0.47 TCGA-JW-A5VL-01 4 165878124 165878124 G A FAM218A 5'UTR 0.27 TCGA-JW-A5VL-01 4 165891156 165891156 G A TRIM61 5'UTR 0.27 TCGA-JW-A5VL-01 4 166261542 166261542 C A MSMO1 Intron 0.42 TCGA-JW-A5VL-01 4 169911336 169911336 G C CBR4 Missense_Mutation p.L227V 0.38 deleterious(0.03) possibly_damaging(0.844) TCGA-JW-A5VL-01 4 174242995 174242995 C G GALNT7 3'UTR 0.46 TCGA-JW-A5VL-01 4 175230002 175230002 G C CEP44 Missense_Mutation p.E224Q 0.41 tolerated(0.11) possibly_damaging(0.526) TCGA-JW-A5VL-01 4 177713327 177713327 C G VEGFC Missense_Mutation p.E47Q 0.36 tolerated(0.17) possibly_damaging(0.521) TCGA-JW-A5VL-01 4 183601861 183601861 C G TENM3 Nonsense_Mutation p.S602* 0.39 TCGA-JW-A5VL-01 4 184182427 184182427 T C WWC2 Missense_Mutation p.S551P 0.34 tolerated(0.1) probably_damaging(0.998) TCGA-JW-A5VL-01 4 184585162 184585162 C T TRAPPC11 Nonsense_Mutation p.R48* 0.50 TCGA-JW-A5VL-01 4 184585175 184585175 C G TRAPPC11 Missense_Mutation p.S52C 0.50 tolerated(0.11) possibly_damaging(0.7) TCGA-JW-A5VL-01 4 185552278 185552278 C G CASP3 Missense_Mutation p.E173Q 0.24 tolerated(0.37) probably_damaging(0.958) TCGA-JW-A5VL-01 4 187209599 187209599 C G F11 Intron 0.43 TCGA-JW-A5VL-01 4 22403111 22403111 G A GPR125 Silent p.T808T 0.25 TCGA-JW-A5VL-01 4 2307235 2307235 C T ZFYVE28 Missense_Mutation p.E278K 0.25 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 4 24578195 24578195 C G DHX15 Missense_Mutation p.E60Q 0.39 tolerated_low_confidence(0.46) benign(0.003) TCGA-JW-A5VL-01 4 2632837 2632837 G A FAM193A Missense_Mutation p.E36K 0.43 tolerated(0.06) probably_damaging(0.979) TCGA-JW-A5VL-01 4 2951703 2951703 C G NOP14 Missense_Mutation p.A414P 0.45 tolerated(0.14) probably_damaging(0.912) TCGA-JW-A5VL-01 4 2965765 2965765 C G GRK4 5'UTR 0.33 TCGA-JW-A5VL-01 4 3117082 3117082 C T HTT Missense_Mutation p.R267W 0.51 probably_damaging(0.999) TCGA-JW-A5VL-01 4 3201506 3201506 G A HTT Missense_Mutation p.D1806N 0.42 benign(0.005) TCGA-JW-A5VL-01 4 3344302 3344302 C T RGS12 Intron 0.48 TCGA-JW-A5VL-01 4 343955 343955 G C ZNF141 Intron 0.36 TCGA-JW-A5VL-01 4 37445470 37445470 G A KIAA1239 Silent p.V620V 0.38 TCGA-JW-A5VL-01 4 38775583 38775583 C G TLR10 Missense_Mutation p.M543I 0.50 tolerated(0.24) benign(0.048) TCGA-JW-A5VL-01 4 38776233 38776233 C T TLR10 Missense_Mutation p.D327N 0.26 tolerated(1) benign(0.008) TCGA-JW-A5VL-01 4 40045511 40045511 C G RP11-333E13.4 RNA 0.32 TCGA-JW-A5VL-01 4 41984210 41984210 C T DCAF4L1 Missense_Mutation p.S134L 0.55 deleterious(0) benign(0.273) TCGA-JW-A5VL-01 4 4198908 4198908 G C OTOP1 Missense_Mutation p.F551L 0.45 tolerated(0.24) benign(0.174) TCGA-JW-A5VL-01 4 47465677 47465677 G A COMMD8 5'UTR 0.35 TCGA-JW-A5VL-01 4 47594711 47594711 C G ATP10D 3'UTR 0.30 TCGA-JW-A5VL-01 4 48037752 48037752 G C NIPAL1 Missense_Mutation p.E266Q 0.47 tolerated(0.61) benign(0.104) TCGA-JW-A5VL-01 4 48490485 48490485 C G SLC10A4 Missense_Mutation p.F281L 0.37 tolerated(0.17) possibly_damaging(0.869) TCGA-JW-A5VL-01 4 48494963 48494963 C T ZAR1 Silent p.F355F 0.42 TCGA-JW-A5VL-01 4 48588685 48588685 C G FRYL Missense_Mutation p.L567F 0.40 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VL-01 4 54245406 54245406 G C FIP1L1 Missense_Mutation p.E49Q 0.34 tolerated(0.22) possibly_damaging(0.694) TCGA-JW-A5VL-01 4 54347998 54347998 G A LNX1 Silent p.L458L 0.29 TCGA-JW-A5VL-01 4 57179512 57179512 G C KIAA1211 Missense_Mutation p.Q168H 0.42 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 4 57523943 57523943 C T HOPX Missense_Mutation p.E14K 0.23 tolerated_low_confidence(0.29) possibly_damaging(0.486) TCGA-JW-A5VL-01 4 57524043 57524043 C T HOPX 5'UTR 0.24 TCGA-JW-A5VL-01 4 6302476 6302476 C G WFS1 Missense_Mutation p.I318M 0.38 tolerated(0.34) benign(0.158) TCGA-JW-A5VL-01 4 6382809 6382809 G C PPP2R2C Missense_Mutation p.S28C 0.48 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 4 66280088 66280088 G A EPHA5 Missense_Mutation p.S534L 0.28 deleterious(0.02) probably_damaging(0.985) TCGA-JW-A5VL-01 4 68447142 68447142 G C STAP1 Missense_Mutation p.E161D 0.35 tolerated(0.37) benign(0.08) TCGA-JW-A5VL-01 4 6863938 6863938 C G KIAA0232 Missense_Mutation p.S610C 0.50 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 4 70074191 70074191 C T UGT2B11 Missense_Mutation p.E294K 0.38 tolerated(0.07) possibly_damaging(0.595) TCGA-JW-A5VL-01 4 71347022 71347022 G A MUC7 Silent p.E187E 0.44 TCGA-JW-A5VL-01 4 72436613 72436613 C G SLC4A4 3'UTR 0.38 TCGA-JW-A5VL-01 4 786358 786358 C G CPLX1 Missense_Mutation p.E24Q 0.44 tolerated(0.08) probably_damaging(0.998) TCGA-JW-A5VL-01 4 79385678 79385678 G C FRAS1 Missense_Mutation p.E2324Q 0.53 possibly_damaging(0.505) TCGA-JW-A5VL-01 4 79461938 79461938 C G FRAS1 Nonsense_Mutation p.S3900* 0.48 TCGA-JW-A5VL-01 4 79461991 79461991 C G FRAS1 Missense_Mutation p.L3918V 0.34 probably_damaging(0.998) TCGA-JW-A5VL-01 4 79772146 79772146 C T BMP2K Silent p.I273I 0.50 TCGA-JW-A5VL-01 4 8233776 8233776 C G SH3TC1 Missense_Mutation p.I1008M 0.47 deleterious(0) possibly_damaging(0.757) TCGA-JW-A5VL-01 4 8621262 8621262 C T CPZ Missense_Mutation p.S626L 0.52 tolerated_low_confidence(0.29) benign(0.002) TCGA-JW-A5VL-01 4 877234 877234 C T GAK Missense_Mutation p.E425K 0.43 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 4 88099767 88099767 G C KLHL8 Missense_Mutation p.L320V 0.44 deleterious(0.05) probably_damaging(0.914) TCGA-JW-A5VL-01 4 88902690 88902690 G A SPP1 Missense_Mutation p.D94N 0.58 tolerated(0.26) probably_damaging(0.959) TCGA-JW-A5VL-01 4 90857754 90857754 A T MMRN1 Missense_Mutation p.T975S 0.33 tolerated(0.07) benign(0.064) TCGA-JW-A5VL-01 4 90857906 90857906 G C MMRN1 Silent p.L1025L 0.31 TCGA-JW-A5VL-01 4 95211574 95211574 C G SMARCAD1 3'UTR 0.33 TCGA-JW-A5VL-01 4 95211825 95211825 C G SMARCAD1 3'UTR 0.46 TCGA-JW-A5VL-01 5 102494886 102494886 C G PPIP5K2 Missense_Mutation p.L592V 0.35 deleterious(0.01) probably_damaging(0.919) TCGA-JW-A5VL-01 5 10394201 10394201 G A MARCH6 Missense_Mutation p.M258I 0.48 tolerated(0.33) benign(0.005) TCGA-JW-A5VL-01 5 106716965 106716965 C T EFNA5 Silent p.L226L 0.30 TCGA-JW-A5VL-01 5 108698712 108698712 G A PJA2 Missense_Mutation p.S494F 0.40 tolerated(0.51) benign(0.321) TCGA-JW-A5VL-01 5 108698717 108698717 C G PJA2 Missense_Mutation p.Q492H 0.40 tolerated(0.09) benign(0.078) TCGA-JW-A5VL-01 5 109025727 109025727 G A MAN2A1 5'UTR 0.59 TCGA-JW-A5VL-01 5 10972668 10972668 C G CTNND2 3'UTR 0.33 TCGA-JW-A5VL-01 5 112868672 112868672 G A YTHDC2 Missense_Mutation p.E258K 0.46 deleterious(0) benign(0.4) TCGA-JW-A5VL-01 5 112868725 112868725 G C YTHDC2 Missense_Mutation p.Q275H 0.33 tolerated(0.22) benign(0.188) TCGA-JW-A5VL-01 5 114547640 114547640 G C PGGT1B 3'UTR 0.35 TCGA-JW-A5VL-01 5 114878770 114878770 C T FEM1C Missense_Mutation p.D141N 0.32 tolerated(0.17) possibly_damaging(0.572) TCGA-JW-A5VL-01 5 118788278 118788278 C T HSD17B4 5'UTR 0.43 TCGA-JW-A5VL-01 5 118835193 118835193 C G HSD17B4 Missense_Mutation p.S410C 0.42 tolerated(0.11) benign(0.011) TCGA-JW-A5VL-01 5 118968449 118968449 C T FAM170A Missense_Mutation p.S26L 0.48 tolerated(0.29) benign(0.057) TCGA-JW-A5VL-01 5 121487653 121487653 C G ZNF474 5'UTR 0.46 TCGA-JW-A5VL-01 5 123984271 123984271 C G ZNF608 Missense_Mutation p.L602F 0.43 tolerated(0.23) benign(0.276) TCGA-JW-A5VL-01 5 126993493 126993493 G A CTXN3 3'UTR 0.35 TCGA-JW-A5VL-01 5 128887591 128887591 G A ADAMTS19 Missense_Mutation p.D449N 0.48 deleterious(0.03) probably_damaging(0.997) TCGA-JW-A5VL-01 5 129037283 129037283 G A ADAMTS19 Missense_Mutation p.E1047K 0.57 tolerated(0.25) benign(0.023) TCGA-JW-A5VL-01 5 131545021 131545021 G C P4HA2 Missense_Mutation p.P238R 0.39 deleterious(0) possibly_damaging(0.467) TCGA-JW-A5VL-01 5 131923747 131923747 C G RAD50 Silent p.L339L 0.47 TCGA-JW-A5VL-01 5 132161162 132161162 G C SHROOM1 Nonsense_Mutation p.S224* 0.25 TCGA-JW-A5VL-01 5 133533378 133533378 G A PPP2CA 3'UTR 0.40 TCGA-JW-A5VL-01 5 134116909 134116909 G A DDX46 Silent p.L284L 0.31 TCGA-JW-A5VL-01 5 135416194 135416194 C T VTRNA2-1 RNA 0.41 TCGA-JW-A5VL-01 5 135416242 135416242 G C VTRNA2-1 RNA 0.52 TCGA-JW-A5VL-01 5 136964039 136964039 C T KLHL3 Missense_Mutation p.G513E 0.45 tolerated(0.99) benign(0.002) TCGA-JW-A5VL-01 5 137420241 137420241 G A WNT8A Missense_Mutation p.E53K 0.41 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 5 137518570 137518570 G A KIF20A Silent p.L241L 0.25 TCGA-JW-A5VL-01 5 137621806 137621806 C T CDC25C Missense_Mutation p.E393K 0.43 deleterious(0.03) possibly_damaging(0.732) TCGA-JW-A5VL-01 5 138210089 138210089 G C LRRTM2 Nonsense_Mutation p.S54* 0.30 TCGA-JW-A5VL-01 5 13841827 13841827 C T DNAH5 Missense_Mutation p.E1820K 0.78 benign(0.292) TCGA-JW-A5VL-01 5 138643658 138643658 G C MATR3 Missense_Mutation p.R185T 0.40 deleterious(0.01) probably_damaging(0.916) TCGA-JW-A5VL-01 5 138755781 138755781 C G DNAJC18 Missense_Mutation p.D305H 0.40 deleterious(0.03) probably_damaging(0.983) TCGA-JW-A5VL-01 5 139884447 139884447 C T ANKHD1 Nonsense_Mutation p.Q1016* 0.32 TCGA-JW-A5VL-01 5 140249551 140249551 G T PCDHA11 Missense_Mutation p.G288V 0.52 tolerated_low_confidence(1) benign(0.008) TCGA-JW-A5VL-01 5 140476557 140476557 C T PCDHB2 Missense_Mutation p.S728L 0.45 tolerated_low_confidence(0.11) benign(0.014) TCGA-JW-A5VL-01 5 140530897 140530897 C T PCDHB6 Silent p.L353L 0.40 TCGA-JW-A5VL-01 5 140552567 140552567 G C PCDHB7 Missense_Mutation p.D51H 0.51 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-JW-A5VL-01 5 140553673 140553673 C G PCDHB7 Missense_Mutation p.I419M 0.35 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-JW-A5VL-01 5 140554977 140554977 G T PCDHB7 3'UTR 0.55 TCGA-JW-A5VL-01 5 140573946 140573946 C G PCDHB10 Silent p.L607L 0.29 TCGA-JW-A5VL-01 5 140590708 140590708 G A PCDHB12 Silent p.G743G 0.43 TCGA-JW-A5VL-01 5 140723829 140723829 C G PCDHGA3 Missense_Mutation p.L77V 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-JW-A5VL-01 5 140725574 140725574 C T PCDHGA3 Silent p.V658V 0.45 TCGA-JW-A5VL-01 5 140725995 140725995 G C PCDHGA3 Missense_Mutation p.E799Q 0.42 tolerated_low_confidence(0.22) benign(0.025) TCGA-JW-A5VL-01 5 140754711 140754711 G A PCDHGA6 Missense_Mutation p.R354K 0.36 deleterious_low_confidence(0.04) benign(0.021) TCGA-JW-A5VL-01 5 140773110 140773110 C T PCDHGA8 Missense_Mutation p.H244Y 0.43 deleterious_low_confidence(0) benign(0.001) TCGA-JW-A5VL-01 5 140788169 140788169 G C PCDHGB6 Missense_Mutation p.D134H 0.39 tolerated(0.19) benign(0.002) TCGA-JW-A5VL-01 5 141019656 141019656 G A RELL2 Missense_Mutation p.E225K 0.36 deleterious_low_confidence(0) benign(0.171) TCGA-JW-A5VL-01 5 141020662 141020662 G C FCHSD1 3'UTR 0.54 TCGA-JW-A5VL-01 5 142602153 142602153 G C ARHGAP26 3'UTR 0.47 TCGA-JW-A5VL-01 5 146792219 146792219 C T DPYSL3 Silent p.L305L 0.48 TCGA-JW-A5VL-01 5 147510945 147510945 G A SPINK5 Missense_Mutation p.E1060K 0.33 deleterious(0.04) benign(0.169) TCGA-JW-A5VL-01 5 148720222 148720222 G C AFAP1L1 3'UTR 0.38 TCGA-JW-A5VL-01 5 149324192 149324192 C T PDE6A Silent p.S15S 0.48 TCGA-JW-A5VL-01 5 149431695 149431695 G A HMGXB3 Silent p.Q1273Q 0.24 TCGA-JW-A5VL-01 5 150947811 150947811 G A FAT2 Missense_Mutation p.R228W 0.46 probably_damaging(0.999) TCGA-JW-A5VL-01 5 153857266 153857266 C T HAND1 Silent p.K101K 0.39 TCGA-JW-A5VL-01 5 154255154 154255154 G C CNOT8 3'UTR 0.25 TCGA-JW-A5VL-01 5 158705280 158705280 C T UBLCP1 Missense_Mutation p.S240L 0.36 deleterious(0.01) benign(0.057) TCGA-JW-A5VL-01 5 1632866 1632866 C T RP11-43F13.1 Intron 0.26 TCGA-JW-A5VL-01 5 16508724 16508724 C G FAM134B Intron 0.35 TCGA-JW-A5VL-01 5 16666672 16666672 C T MYO10 3'UTR 0.42 TCGA-JW-A5VL-01 5 167553926 167553926 G A TENM2 Missense_Mutation p.G793S 0.52 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 5 167851052 167851052 G C WWC1 Missense_Mutation p.E597Q 0.53 tolerated(0.29) benign(0.012) TCGA-JW-A5VL-01 5 168151429 168151429 C T SLIT3 Silent p.L777L 0.31 TCGA-JW-A5VL-01 5 16818160 16818160 G A MYO10 Silent p.I79I 0.33 TCGA-JW-A5VL-01 5 168233516 168233516 G C SLIT3 Missense_Mutation p.I290M 0.44 deleterious(0) possibly_damaging(0.887) TCGA-JW-A5VL-01 5 169125422 169125422 G A DOCK2 Missense_Mutation p.E342K 0.22 deleterious(0.01) probably_damaging(0.954) TCGA-JW-A5VL-01 5 169310879 169310879 C T FAM196B Silent p.V8V 0.41 TCGA-JW-A5VL-01 5 169506072 169506072 G C DOCK2 Silent p.R1696R 0.51 TCGA-JW-A5VL-01 5 169697724 169697724 G A LCP2 Silent p.I174I 0.41 TCGA-JW-A5VL-01 5 171479969 171479969 C G STK10 Silent p.L910L 0.38 TCGA-JW-A5VL-01 5 172114931 172114931 G A NEURL1B 3'UTR 0.29 TCGA-JW-A5VL-01 5 175110236 175110236 G C HRH2 5'UTR 0.38 TCGA-JW-A5VL-01 5 175395007 175395007 G T THOC3 Missense_Mutation p.R69S 0.36 deleterious(0.01) possibly_damaging(0.531) TCGA-JW-A5VL-01 5 175816403 175816403 C G HIGD2A Missense_Mutation p.Q76E 0.47 deleterious(0) possibly_damaging(0.771) TCGA-JW-A5VL-01 5 175934366 175934366 C T FAF2 3'UTR 0.47 TCGA-JW-A5VL-01 5 175953989 175953989 C G RNF44 3'UTR 0.41 TCGA-JW-A5VL-01 5 176011451 176011451 G C CDHR2 Missense_Mutation p.Q723H 0.37 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 5 176301441 176301441 G A UNC5A Missense_Mutation p.E418K 0.43 tolerated(0.25) benign(0.05) TCGA-JW-A5VL-01 5 176562465 176562465 C G NSD1 Missense_Mutation p.P121A 0.35 tolerated_low_confidence(0.06) benign(0.055) TCGA-JW-A5VL-01 5 176917893 176917893 C T PDLIM7 Missense_Mutation p.E184K 0.49 tolerated(0.22) benign(0.011) TCGA-JW-A5VL-01 5 176918017 176918017 C T PDLIM7 Missense_Mutation p.E177K 0.46 deleterious(0.01) benign(0.075) TCGA-JW-A5VL-01 5 179149866 179149866 G A CANX Missense_Mutation p.R415K 0.40 tolerated(1) benign(0.005) TCGA-JW-A5VL-01 5 179201994 179201994 G C MAML1 3'UTR 0.48 TCGA-JW-A5VL-01 5 179287538 179287538 C G CTC-241N9.1 Missense_Mutation p.Q77E 0.41 unknown(0) TCGA-JW-A5VL-01 5 179305336 179305336 G A TBC1D9B Silent p.F585F 0.40 TCGA-JW-A5VL-01 5 179306676 179306676 C T TBC1D9B Silent p.L456L 0.42 TCGA-JW-A5VL-01 5 179318451 179318451 G A TBC1D9B Silent p.F324F 0.39 TCGA-JW-A5VL-01 5 179318481 179318481 G C TBC1D9B Missense_Mutation p.F314L 0.43 deleterious(0.02) possibly_damaging(0.61) TCGA-JW-A5VL-01 5 179696336 179696336 G A MAPK9 Missense_Mutation p.H66Y 0.47 deleterious(0.02) possibly_damaging(0.798) TCGA-JW-A5VL-01 5 180030074 180030074 G C FLT4 3'UTR 0.50 TCGA-JW-A5VL-01 5 180043928 180043928 C G FLT4 Missense_Mutation p.R1023T 0.37 deleterious(0) possibly_damaging(0.891) TCGA-JW-A5VL-01 5 180043956 180043956 G A FLT4 Missense_Mutation p.L1014F 0.47 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 5 180326158 180326158 C G BTNL8 5'UTR 0.32 TCGA-JW-A5VL-01 5 21802394 21802394 C T CDH12 Missense_Mutation p.E380K 0.10 deleterious(0) probably_damaging(0.991) TCGA-JW-A5VL-01 5 21817228 21817228 C G CDH12 Missense_Mutation p.L276F 0.50 tolerated(1) benign(0.045) TCGA-JW-A5VL-01 5 228353 228353 G C SDHA Silent p.L225L 0.27 TCGA-JW-A5VL-01 5 31409384 31409384 C G DROSHA Missense_Mutation p.M1241I 0.52 tolerated(0.26) benign(0.013) TCGA-JW-A5VL-01 5 32048674 32048674 G A PDZD2 Missense_Mutation p.E517K 0.44 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 5 32710764 32710764 C T NPR3 5'Flank 0.45 TCGA-JW-A5VL-01 5 32774868 32774868 C G NPR3 Missense_Mutation p.L372V 0.44 deleterious(0.03) possibly_damaging(0.656) TCGA-JW-A5VL-01 5 33448722 33448722 C T TARS Silent p.L72L 0.44 TCGA-JW-A5VL-01 5 33614445 33614445 C G ADAMTS12 Missense_Mutation p.E809Q 0.38 tolerated(0.28) probably_damaging(0.987) TCGA-JW-A5VL-01 5 33881290 33881290 G A ADAMTS12 Silent p.L141L 0.33 TCGA-JW-A5VL-01 5 34937497 34937497 G A DNAJC21 Missense_Mutation p.E169K 0.44 tolerated(0.3) benign(0.155) TCGA-JW-A5VL-01 5 36066870 36066870 G A UGT3A2 Missense_Mutation p.L8F 0.49 deleterious(0.04) benign(0.172) TCGA-JW-A5VL-01 5 37038789 37038789 C G NIPBL Silent p.L2019L 0.46 TCGA-JW-A5VL-01 5 37183701 37183701 C T C5orf42 Missense_Mutation p.E1528K 0.41 tolerated(0.28) benign(0.02) TCGA-JW-A5VL-01 5 37701239 37701239 C G WDR70 Missense_Mutation p.F424L 0.42 deleterious(0.04) benign(0.066) TCGA-JW-A5VL-01 5 38478363 38478363 G C LIFR 3'UTR 0.44 TCGA-JW-A5VL-01 5 39394478 39394478 G A DAB2 5'UTR 0.49 TCGA-JW-A5VL-01 5 40947764 40947764 C G C7 Missense_Mutation p.P267A 0.42 deleterious(0) probably_damaging(0.936) TCGA-JW-A5VL-01 5 41038910 41038910 C G MROH2B Missense_Mutation p.K714N 0.45 deleterious(0) benign(0.189) TCGA-JW-A5VL-01 5 41058167 41058167 G C MROH2B Missense_Mutation p.Q252E 0.23 deleterious(0.01) possibly_damaging(0.58) TCGA-JW-A5VL-01 5 428077 428077 G C AHRR Silent p.L310L 0.57 TCGA-JW-A5VL-01 5 472834 472834 C T CTD-2228K2.5 Missense_Mutation p.E73K 0.40 possibly_damaging(0.497) TCGA-JW-A5VL-01 5 52351441 52351441 G A ITGA2 Missense_Mutation p.E285K 0.42 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 5 53182187 53182187 C G ARL15 3'UTR 0.48 TCGA-JW-A5VL-01 5 54274580 54274580 C G ESM1 3'UTR 0.51 TCGA-JW-A5VL-01 5 54567958 54567958 C T DHX29 Missense_Mutation p.D941N 0.42 deleterious(0.01) probably_damaging(0.989) TCGA-JW-A5VL-01 5 5457651 5457651 G C KIAA0947 Missense_Mutation p.E300Q 0.38 deleterious(0.01) possibly_damaging(0.892) TCGA-JW-A5VL-01 5 5462697 5462697 G C KIAA0947 Missense_Mutation p.D1084H 0.48 tolerated(0.17) benign(0.015) TCGA-JW-A5VL-01 5 54706374 54706374 G C SKIV2L2 Missense_Mutation p.E890Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 5 54706386 54706386 A C SKIV2L2 Missense_Mutation p.N894H 0.45 deleterious(0.02) probably_damaging(0.965) TCGA-JW-A5VL-01 5 56212732 56212732 C T SETD9 3'UTR 0.45 TCGA-JW-A5VL-01 5 56212740 56212740 C T SETD9 3'UTR 0.44 TCGA-JW-A5VL-01 5 56542956 56542956 C T GPBP1 Missense_Mutation p.H247Y 0.43 tolerated(1) benign(0.43) TCGA-JW-A5VL-01 5 57879050 57879050 G A RAB3C Silent p.A5A 0.46 TCGA-JW-A5VL-01 5 60186718 60186718 G A ERCC8 Nonsense_Mutation p.Q347* 0.47 TCGA-JW-A5VL-01 5 60189042 60189042 C T ERCC8 Intron 0.46 TCGA-JW-A5VL-01 5 60240761 60240761 C T ERCC8 Silent p.R25R 0.39 TCGA-JW-A5VL-01 5 60834734 60834734 C T ZSWIM6 Silent p.F825F 0.46 TCGA-JW-A5VL-01 5 64625257 64625257 C T ADAMTS6 Missense_Mutation p.E391K 0.36 deleterious(0) benign(0.309) TCGA-JW-A5VL-01 5 64966100 64966100 G A SGTB Silent p.F296F 0.31 TCGA-JW-A5VL-01 5 64976529 64976529 G A SGTB Missense_Mutation p.S191L 0.32 deleterious(0) benign(0.09) TCGA-JW-A5VL-01 5 65084037 65084037 G C NLN Missense_Mutation p.E351Q 0.43 tolerated(0.35) benign(0.009) TCGA-JW-A5VL-01 5 66461421 66461421 G A MAST4 Silent p.L2138L 0.30 TCGA-JW-A5VL-01 5 67522828 67522828 G A PIK3R1 Missense_Mutation p.E109K 0.27 tolerated(0.79) benign(0.034) TCGA-JW-A5VL-01 5 67589548 67589548 C G PIK3R1 Silent p.V437V 0.41 TCGA-JW-A5VL-01 5 68578572 68578572 G C CCDC125 Nonsense_Mutation p.S507* 0.39 TCGA-JW-A5VL-01 5 68692359 68692359 C G RAD17 Missense_Mutation p.L531V 0.41 tolerated(0.09) benign(0.035) TCGA-JW-A5VL-01 5 68728887 68728887 G C MARVELD2 Missense_Mutation p.M490I 0.10 tolerated(0.1) benign(0.122) TCGA-JW-A5VL-01 5 71496106 71496106 C G MAP1B Silent p.V2308V 0.48 TCGA-JW-A5VL-01 5 71501312 71501312 C G MAP1B 3'UTR 0.36 TCGA-JW-A5VL-01 5 71521910 71521910 C G MRPS27 Missense_Mutation p.E271Q 0.43 tolerated(0.19) benign(0.424) TCGA-JW-A5VL-01 5 75428068 75428068 G C SV2C Missense_Mutation p.D165H 0.29 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 5 7802394 7802394 G C ADCY2 Missense_Mutation p.E898Q 0.47 tolerated(0.09) probably_damaging(0.994) TCGA-JW-A5VL-01 5 7866836 7866836 G A FASTKD3 Missense_Mutation p.S454L 0.43 deleterious(0.02) probably_damaging(0.969) TCGA-JW-A5VL-01 5 79029027 79029027 C G CMYA5 Missense_Mutation p.S1480C 0.38 benign(0) TCGA-JW-A5VL-01 5 79734302 79734302 G C ZFYVE16 Missense_Mutation p.D600H 0.29 deleterious(0.01) probably_damaging(0.94) TCGA-JW-A5VL-01 5 82357701 82357701 C T TMEM167A Missense_Mutation p.R48K 0.28 tolerated(0.06) benign(0.437) TCGA-JW-A5VL-01 5 82817006 82817006 C G VCAN Missense_Mutation p.Q961E 0.38 deleterious(0.03) benign(0.11) TCGA-JW-A5VL-01 5 82836182 82836182 G A VCAN Missense_Mutation p.E2454K 0.27 tolerated(0.91) benign(0.002) TCGA-JW-A5VL-01 5 90008191 90008191 C G GPR98 Missense_Mutation p.Q3044E 0.41 benign(0.149) TCGA-JW-A5VL-01 5 908479 908479 C G TRIP13 Missense_Mutation p.L257V 0.47 deleterious(0) probably_damaging(0.98) TCGA-JW-A5VL-01 5 98229157 98229157 C G CHD1 Missense_Mutation p.E652Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 6 100911253 100911253 G A SIM1 Missense_Mutation p.S31L 0.44 deleterious(0.01) benign(0.216) TCGA-JW-A5VL-01 6 102134167 102134167 C T GRIK2 Missense_Mutation p.S297L 0.54 tolerated(0.12) benign(0.289) TCGA-JW-A5VL-01 6 10529685 10529685 G A GCNT2 Missense_Mutation p.E181K 0.26 tolerated(1) benign(0.005) TCGA-JW-A5VL-01 6 106555001 106555001 G A PRDM1 Silent p.L706L 0.31 TCGA-JW-A5VL-01 6 107419757 107419757 C T BEND3 Missense_Mutation p.E80K 0.62 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-JW-A5VL-01 6 107780455 107780455 C G PDSS2 Missense_Mutation p.R12P 0.38 tolerated_low_confidence(0.1) benign(0.044) TCGA-JW-A5VL-01 6 107780605 107780605 C G PDSS2 5'UTR 0.31 TCGA-JW-A5VL-01 6 108582039 108582039 G A SNX3 Silent p.L29L 0.45 TCGA-JW-A5VL-01 6 108841001 108841001 G C LACE1 Missense_Mutation p.L435F 0.48 deleterious(0) possibly_damaging(0.665) TCGA-JW-A5VL-01 6 111211456 111211456 G C AMD1 Splice_Site p.X109_splice 0.29 TCGA-JW-A5VL-01 6 111587259 111587259 C G KIAA1919 Nonsense_Mutation p.S165* 0.27 TCGA-JW-A5VL-01 6 111913016 111913016 C G TRAF3IP2 Missense_Mutation p.E92Q 0.50 tolerated(0.06) benign(0.142) TCGA-JW-A5VL-01 6 112535211 112535211 G C LAMA4 Intron 0.40 TCGA-JW-A5VL-01 6 116756828 116756828 C T DSE Silent p.V399V 0.40 TCGA-JW-A5VL-01 6 119285899 119285899 C T FAM184A Missense_Mutation p.R1024Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 6 119500904 119500904 C T MAN1A1 3'UTR 0.29 TCGA-JW-A5VL-01 6 128399990 128399990 C G PTPRK Missense_Mutation p.L617F 0.44 deleterious(0) possibly_damaging(0.711) TCGA-JW-A5VL-01 6 129777516 129777516 G C LAMA2 Silent p.L2248L 0.38 TCGA-JW-A5VL-01 6 129828747 129828747 G C LAMA2 Missense_Mutation p.Q2939H 0.32 deleterious(0) possibly_damaging(0.602) TCGA-JW-A5VL-01 6 130363855 130363855 C A L3MBTL3 Missense_Mutation p.S4Y 0.54 deleterious(0) possibly_damaging(0.867) TCGA-JW-A5VL-01 6 131919782 131919782 G A MED23 Silent p.F780F 0.47 TCGA-JW-A5VL-01 6 133045852 133045852 G C VNN3 3'UTR 0.36 TCGA-JW-A5VL-01 6 134274387 134274387 G T TBPL1 5'UTR 0.44 TCGA-JW-A5VL-01 6 134498933 134498933 C G SGK1 Intron 0.38 TCGA-JW-A5VL-01 6 134498993 134498993 C T SGK1 Intron 0.39 TCGA-JW-A5VL-01 6 135358409 135358409 C T HBS1L Intron 0.48 TCGA-JW-A5VL-01 6 135539381 135539382 - T MYB 3'UTR 0.39 TCGA-JW-A5VL-01 6 135769614 135769614 C G AHI1 Splice_Site p.X481_splice 0.32 TCGA-JW-A5VL-01 6 136597237 136597237 C G BCLAF1 Missense_Mutation p.D476H 0.24 deleterious(0) probably_damaging(0.934) TCGA-JW-A5VL-01 6 137112890 137112890 C G MAP3K5 Missense_Mutation p.D136H 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-JW-A5VL-01 6 138649264 138649264 G A KIAA1244 Missense_Mutation p.G1703E 0.50 tolerated(0.12) probably_damaging(0.995) TCGA-JW-A5VL-01 6 142519611 142519611 C T VTA1 Silent p.L186L 0.60 TCGA-JW-A5VL-01 6 142623249 142623249 C T GPR126 5'UTR 0.39 TCGA-JW-A5VL-01 6 143074955 143074955 G C HIVEP2 Silent p.V2210V 0.36 TCGA-JW-A5VL-01 6 144095193 144095193 C G PHACTR2 Intron 0.28 TCGA-JW-A5VL-01 6 144508260 144508260 G C STX11 Missense_Mutation p.E166Q 0.32 deleterious(0.01) possibly_damaging(0.776) TCGA-JW-A5VL-01 6 145172442 145172442 G A UTRN 3'UTR 0.42 TCGA-JW-A5VL-01 6 148855021 148855021 G A SASH1 Missense_Mutation p.E617K 0.36 deleterious(0.02) benign(0.012) TCGA-JW-A5VL-01 6 149732298 149732298 G C TAB2 3'UTR 0.40 TCGA-JW-A5VL-01 6 150240369 150240369 G C RAET1G Missense_Mutation p.I147M 0.51 tolerated(0.61) possibly_damaging(0.622) TCGA-JW-A5VL-01 6 150386782 150386782 G C ULBP3 Missense_Mutation p.S127C 0.48 deleterious(0.04) probably_damaging(1) TCGA-JW-A5VL-01 6 152646242 152646242 C G SYNE1 Missense_Mutation p.E5212Q 0.40 benign(0.193) TCGA-JW-A5VL-01 6 15507417 15507417 C G JARID2 Missense_Mutation p.H864Q 0.48 tolerated(0.05) probably_damaging(0.921) TCGA-JW-A5VL-01 6 157502141 157502141 G A ARID1B Silent p.T1058T 0.45 TCGA-JW-A5VL-01 6 157530367 157530367 G C ARID1B 3'UTR 0.49 TCGA-JW-A5VL-01 6 157713929 157713929 C T TMEM242 3'UTR 0.39 TCGA-JW-A5VL-01 6 158487619 158487619 G C SYNJ2 Missense_Mutation p.D557H 0.44 deleterious(0.03) benign(0.41) TCGA-JW-A5VL-01 6 158492751 158492751 G C SYNJ2 Silent p.L686L 0.50 TCGA-JW-A5VL-01 6 160183011 160183011 G C ACAT2 5'UTR 0.33 TCGA-JW-A5VL-01 6 160560682 160560682 C G SLC22A1 Intron 0.56 TCGA-JW-A5VL-01 6 161026196 161026196 C T LPA Missense_Mutation p.G943R 0.35 deleterious(0) probably_damaging(0.987) TCGA-JW-A5VL-01 6 161532882 161532882 C G MAP3K4 Missense_Mutation p.L1471V 0.43 deleterious(0.04) probably_damaging(0.921) TCGA-JW-A5VL-01 6 16303426 16303426 C G ATXN1 3'UTR 0.55 TCGA-JW-A5VL-01 6 16328526 16328526 C G ATXN1 Missense_Mutation p.E6Q 0.33 deleterious(0) probably_damaging(0.993) TCGA-JW-A5VL-01 6 168272989 168272989 G A MLLT4 Silent p.K170K 0.45 TCGA-JW-A5VL-01 6 168349156 168349156 C G MLLT4 Missense_Mutation p.Q1270E 0.30 tolerated_low_confidence(0.13) benign(0.024) TCGA-JW-A5VL-01 6 168396547 168396547 C T KIF25 5'Flank 0.45 TCGA-JW-A5VL-01 6 170143221 170143221 G A TCTE3 Silent p.F147F 0.50 TCGA-JW-A5VL-01 6 170593005 170593005 G A DLL1 Silent p.N454N 0.38 TCGA-JW-A5VL-01 6 17669684 17669684 C G NUP153 Missense_Mutation p.E316Q 0.43 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 6 18222190 18222190 C T KDM1B Silent p.G580G 0.43 TCGA-JW-A5VL-01 6 20480168 20480168 G A E2F3 Missense_Mutation p.R162Q 0.47 tolerated(0.44) benign(0.335) TCGA-JW-A5VL-01 6 21231403 21231403 C G CDKAL1 3'UTR 0.42 TCGA-JW-A5VL-01 6 24357594 24357594 G A KAAG1 5'UTR 0.24 TCGA-JW-A5VL-01 6 26240726 26240726 G C HIST1H4F Missense_Mutation p.D25H 0.40 deleterious_low_confidence(0) possibly_damaging(0.584) TCGA-JW-A5VL-01 6 26247124 26247124 G C HIST1H4G Missense_Mutation p.Q28E 0.36 deleterious(0.05) benign(0.259) TCGA-JW-A5VL-01 6 26373523 26373523 C T BTN3A2 Silent p.L312L 0.27 TCGA-JW-A5VL-01 6 26444434 26444434 G A BTN3A3 Missense_Mutation p.R112Q 0.42 deleterious(0.03) benign(0.14) TCGA-JW-A5VL-01 6 27440160 27440160 C G ZNF184 5'UTR 0.41 TCGA-JW-A5VL-01 6 2770431 2770431 C G WRNIP1 Silent p.V364V 0.37 TCGA-JW-A5VL-01 6 27775463 27775463 G C HIST1H2BL Missense_Mutation p.I74M 0.40 deleterious_low_confidence(0.01) benign(0.227) TCGA-JW-A5VL-01 6 27834714 27834714 C T HIST1H1B Silent p.P198P 0.41 TCGA-JW-A5VL-01 6 28228247 28228247 G C NKAPL Missense_Mutation p.K366N 0.46 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 6 28228286 28228286 G C NKAPL Missense_Mutation p.K379N 0.46 tolerated(0.09) probably_damaging(0.925) TCGA-JW-A5VL-01 6 28269029 28269029 G C PGBD1 Missense_Mutation p.L466F 0.22 tolerated(0.16) benign(0.031) TCGA-JW-A5VL-01 6 28543884 28543884 G C SCAND3 Missense_Mutation p.Q200E 0.48 deleterious_low_confidence(0) benign(0.005) TCGA-JW-A5VL-01 6 29054661 29054661 C G OR2B3 Missense_Mutation p.R122T 0.43 deleterious(0) benign(0.176) TCGA-JW-A5VL-01 6 29523823 29523823 G A UBD Missense_Mutation p.S111L 0.38 deleterious(0.01) probably_damaging(0.932) TCGA-JW-A5VL-01 6 29910647 29910647 G C HLA-A Missense_Mutation p.D63H 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-JW-A5VL-01 6 30003625 30003625 C T ZNRD1-AS1 Intron 0.39 TCGA-JW-A5VL-01 6 30071895 30071895 G A TRIM31 Silent p.P336P 0.32 TCGA-JW-A5VL-01 6 30525127 30525127 G A PRR3 Silent p.P2P 0.41 TCGA-JW-A5VL-01 6 30671987 30671987 G A MDC1 Missense_Mutation p.S1658F 0.44 deleterious(0.01) possibly_damaging(0.73) TCGA-JW-A5VL-01 6 30675414 30675414 G A MDC1 Missense_Mutation p.S981L 0.37 tolerated(0.12) benign(0.098) TCGA-JW-A5VL-01 6 30681015 30681015 G C MDC1 Nonsense_Mutation p.S235* 0.41 TCGA-JW-A5VL-01 6 30691419 30691419 G C TUBB Missense_Mutation p.E194Q 0.49 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-JW-A5VL-01 6 3077045 3077045 C G RIPK1 5'UTR 0.42 TCGA-JW-A5VL-01 6 3081215 3081215 G C RIPK1 Missense_Mutation p.M108I 0.37 tolerated(0.62) benign(0) TCGA-JW-A5VL-01 6 30866975 30866975 G A DDR1 Missense_Mutation p.E888K 0.28 tolerated(0.57) benign(0.014) TCGA-JW-A5VL-01 6 30917485 30917485 C G DPCR1 Nonsense_Mutation p.S415* 0.38 TCGA-JW-A5VL-01 6 31138112 31138112 C T POU5F1 Missense_Mutation p.E96K 0.35 deleterious(0.02) benign(0.004) TCGA-JW-A5VL-01 6 31324477 31324477 G A HLA-B Nonsense_Mutation p.Q111* 0.58 TCGA-JW-A5VL-01 6 31496834 31496834 C T MCCD1 Missense_Mutation p.R15C 0.39 tolerated(0.2) benign(0) TCGA-JW-A5VL-01 6 31514508 31514508 C T ATP6V1G2 5'UTR 0.38 TCGA-JW-A5VL-01 6 31591540 31591540 G A PRRC2A Silent p.G48G 0.43 TCGA-JW-A5VL-01 6 31730269 31730269 G C MSH5 Missense_Mutation p.M823I 0.52 tolerated(0.1) benign(0.007) TCGA-JW-A5VL-01 6 31778931 31778931 C T HSPA1L Silent p.K273K 0.43 TCGA-JW-A5VL-01 6 31797431 31797431 G C HSPA1B Missense_Mutation p.K568N 0.31 tolerated_low_confidence(0.16) benign(0.009) TCGA-JW-A5VL-01 6 31830436 31830436 G C NEU1 Missense_Mutation p.L40V 0.28 tolerated(1) benign(0) TCGA-JW-A5VL-01 6 31851657 31851657 C T EHMT2 Missense_Mutation p.E948K 0.39 tolerated(0.17) benign(0.407) TCGA-JW-A5VL-01 6 32097077 32097077 C G FKBPL Missense_Mutation p.E161Q 0.58 deleterious(0.01) probably_damaging(0.946) TCGA-JW-A5VL-01 6 32942501 32942501 C T BRD2 Missense_Mutation p.P98S 0.37 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 6 33239313 33239313 G A VPS52 Intron 0.44 TCGA-JW-A5VL-01 6 33272263 33272263 G C TAPBP Missense_Mutation p.Q341E 0.41 tolerated(0.5) benign(0.049) TCGA-JW-A5VL-01 6 33286832 33286832 G A DAXX Missense_Mutation p.S702F 0.31 tolerated(0.26) benign(0.329) TCGA-JW-A5VL-01 6 33289038 33289038 C T DAXX Missense_Mutation p.E172K 0.45 tolerated(0.16) benign(0.034) TCGA-JW-A5VL-01 6 33289744 33289744 C T DAXX 5'UTR 0.25 TCGA-JW-A5VL-01 6 33384010 33384010 G C PHF1 3'UTR 0.43 TCGA-JW-A5VL-01 6 33420137 33420137 C T SYNGAP1 3'UTR 0.27 TCGA-JW-A5VL-01 6 33554563 33554563 G T GGNBP1 Nonsense_Mutation p.E72* 0.46 TCGA-JW-A5VL-01 6 33647815 33647815 G A ITPR3 Missense_Mutation p.E1377K 0.37 tolerated(0.05) probably_damaging(0.973) TCGA-JW-A5VL-01 6 33663634 33663634 C T ITPR3 3'UTR 0.42 TCGA-JW-A5VL-01 6 34309715 34309715 C T NUDT3 Missense_Mutation p.R45K 0.49 tolerated(0.85) benign(0) TCGA-JW-A5VL-01 6 34507169 34507169 C G SPDEF Silent p.S229S 0.31 TCGA-JW-A5VL-01 6 34791077 34791077 C T UHRF1BP1 Missense_Mutation p.P97L 0.39 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 6 34835034 34835034 C G UHRF1BP1 Missense_Mutation p.L1149V 0.51 tolerated(0.26) benign(0.005) TCGA-JW-A5VL-01 6 34855587 34855587 C G TAF11 Missense_Mutation p.E50Q 0.37 tolerated(0.2) possibly_damaging(0.894) TCGA-JW-A5VL-01 6 35057063 35057063 G A ANKS1A 3'UTR 0.26 TCGA-JW-A5VL-01 6 35057265 35057265 G A ANKS1A 3'UTR 0.45 TCGA-JW-A5VL-01 6 35392162 35392162 G C PPARD Missense_Mutation p.W228C 0.51 tolerated(0.31) possibly_damaging(0.746) TCGA-JW-A5VL-01 6 35762944 35762944 G A CLPS Silent p.D106D 0.22 TCGA-JW-A5VL-01 6 36475283 36475283 C T STK38 Missense_Mutation p.D256N 0.47 tolerated(0.23) benign(0.232) TCGA-JW-A5VL-01 6 37299090 37299090 C G TBC1D22B 3'UTR 0.46 TCGA-JW-A5VL-01 6 38790648 38790648 G A DNAH8 Silent p.L969L 0.39 TCGA-JW-A5VL-01 6 39835530 39835530 G A DAAM2 Missense_Mutation p.A225T 0.35 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 6 39851493 39851493 G A DAAM2 Intron 0.45 TCGA-JW-A5VL-01 6 39869784 39869784 G C DAAM2 Missense_Mutation p.E1060Q 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-JW-A5VL-01 6 39869835 39869835 G C DAAM2 3'UTR 0.44 TCGA-JW-A5VL-01 6 41318486 41318486 C G NCR2 Missense_Mutation p.Q239E 0.49 deleterious_low_confidence(0.02) benign(0.071) TCGA-JW-A5VL-01 6 41658858 41658858 G A TFEB Missense_Mutation p.H32Y 0.44 tolerated(0.59) unknown(0) TCGA-JW-A5VL-01 6 41738419 41738419 G A FRS3 Silent p.L473L 0.26 TCGA-JW-A5VL-01 6 43017742 43017742 G C CUL7 Missense_Mutation p.Q594E 0.35 tolerated(0.17) benign(0.074) TCGA-JW-A5VL-01 6 43017776 43017776 G C CUL7 Silent p.L582L 0.33 TCGA-JW-A5VL-01 6 43018878 43018878 G T CUL7 Nonsense_Mutation p.S438* 0.56 TCGA-JW-A5VL-01 6 43153911 43153911 C T CUL9 Silent p.L323L 0.35 TCGA-JW-A5VL-01 6 43164388 43164388 C T CUL9 Missense_Mutation p.S864F 0.48 deleterious(0.03) possibly_damaging(0.646) TCGA-JW-A5VL-01 6 43237552 43237552 G A TTBK1 Intron 0.41 TCGA-JW-A5VL-01 6 43400097 43400097 C G ABCC10 Missense_Mutation p.H127D 0.31 tolerated(0.07) benign(0.021) TCGA-JW-A5VL-01 6 43483734 43483734 C T YIPF3 Missense_Mutation p.E61K 0.36 tolerated(0.17) possibly_damaging(0.736) TCGA-JW-A5VL-01 6 43492253 43492253 G A XPO5 Missense_Mutation p.R1145C 0.50 deleterious(0) probably_damaging(0.935) TCGA-JW-A5VL-01 6 44201376 44201376 C T SLC29A1 3'UTR 0.40 TCGA-JW-A5VL-01 6 44233056 44233056 C T NFKBIE Missense_Mutation p.E149K 0.30 deleterious(0.05) benign(0.437) TCGA-JW-A5VL-01 6 44387271 44387271 C G CDC5L Nonsense_Mutation p.S393* 0.41 TCGA-JW-A5VL-01 6 45869828 45869828 C G CLIC5 3'UTR 0.42 TCGA-JW-A5VL-01 6 46111060 46111060 C G ENPP4 Missense_Mutation p.L349V 0.36 deleterious(0.01) possibly_damaging(0.714) TCGA-JW-A5VL-01 6 49456095 49456095 G A CENPQ Missense_Mutation p.E170K 0.26 deleterious(0) possibly_damaging(0.874) TCGA-JW-A5VL-01 6 51890945 51890945 G C PKHD1 Missense_Mutation p.F1221L 0.33 tolerated(0.12) benign(0.152) TCGA-JW-A5VL-01 6 51921587 51921587 C G PKHD1 Splice_Site p.X535_splice 0.42 TCGA-JW-A5VL-01 6 52764836 52764836 C G GSTA3 Missense_Mutation p.E104Q 0.47 tolerated(0.11) benign(0.034) TCGA-JW-A5VL-01 6 54095557 54095557 C T MLIP Nonsense_Mutation p.Q387* 0.34 TCGA-JW-A5VL-01 6 56465020 56465020 C G DST Splice_Site p.X1225_splice 0.42 TCGA-JW-A5VL-01 6 56469029 56469029 C G DST Intron 0.42 TCGA-JW-A5VL-01 6 56504497 56504497 G C DST Silent p.L361L 0.44 TCGA-JW-A5VL-01 6 56707877 56707877 C G RP11-472M19.2 5'Flank 0.52 TCGA-JW-A5VL-01 6 57061377 57061377 G C RAB23 Missense_Mutation p.S90C 0.27 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 6 57512726 57512726 C G PRIM2 3'UTR 0.12 TCGA-JW-A5VL-01 6 64291324 64291324 G A PTP4A1 3'UTR 0.52 TCGA-JW-A5VL-01 6 64394152 64394152 G C PHF3 Missense_Mutation p.E177Q 0.36 tolerated(0.18) benign(0.238) TCGA-JW-A5VL-01 6 65301604 65301604 C G EYS Missense_Mutation p.D1386H 0.57 tolerated(0.2) benign(0.146) TCGA-JW-A5VL-01 6 71270356 71270356 G C FAM135A 3'UTR 0.59 TCGA-JW-A5VL-01 6 7189489 7189489 C G RREB1 Missense_Mutation p.S120C 0.44 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 6 72926836 72926836 G A RIMS1 Intron 0.48 TCGA-JW-A5VL-01 6 73879568 73879568 G A KCNQ5 Missense_Mutation p.R542Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 6 74135210 74135210 G A MB21D1 Missense_Mutation p.H437Y 0.24 deleterious(0.02) probably_damaging(0.987) TCGA-JW-A5VL-01 6 74135218 74135218 G C MB21D1 Missense_Mutation p.S434C 0.25 tolerated(1) benign(0.002) TCGA-JW-A5VL-01 6 76589832 76589832 G C MYO6 Missense_Mutation p.G761R 0.49 deleterious(0) unknown(0) TCGA-JW-A5VL-01 6 76629208 76629208 G C MYO6 3'Flank 0.40 TCGA-JW-A5VL-01 6 76631854 76631854 C G IMPG1 Silent p.L782L 0.43 TCGA-JW-A5VL-01 6 81053545 81053545 G C BCKDHB 3'UTR 0.26 TCGA-JW-A5VL-01 6 83848232 83848232 G C DOPEY1 Missense_Mutation p.E1491Q 0.44 deleterious(0.03) probably_damaging(0.978) TCGA-JW-A5VL-01 6 83921024 83921024 G C ME1 3'UTR 0.44 TCGA-JW-A5VL-01 6 86227501 86227501 G A SNX14 Silent p.L747L 0.25 TCGA-JW-A5VL-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.48 deleterious(0) possibly_damaging(0.79) TCGA-JW-A5VL-01 6 88385074 88385074 G A AKIRIN2 3'UTR 0.43 TCGA-JW-A5VL-01 6 88853389 88853389 G A CNR1 3'UTR 0.35 TCGA-JW-A5VL-01 6 89614556 89614556 G C RNGTT Missense_Mutation p.L188V 0.42 tolerated(0.24) benign(0) TCGA-JW-A5VL-01 6 89907951 89907951 C T GABRR1 Missense_Mutation p.M120I 0.33 tolerated(0.27) probably_damaging(0.938) TCGA-JW-A5VL-01 6 90578203 90578203 G C CASP8AP2 RNA 0.38 TCGA-JW-A5VL-01 6 94066513 94066513 C T EPHA7 Missense_Mutation p.E416K 0.34 deleterious(0.02) benign(0.388) TCGA-JW-A5VL-01 6 97246873 97246873 C G GPR63 Missense_Mutation p.L245F 0.29 tolerated(0.2) benign(0.039) TCGA-JW-A5VL-01 6 99282667 99282667 G A POU3F2 5'UTR 0.38 TCGA-JW-A5VL-01 7 100331801 100331801 C G ZAN Missense_Mutation p.P4A 0.36 probably_damaging(0.958) TCGA-JW-A5VL-01 7 100482396 100482396 G C SRRT Missense_Mutation p.K326N 0.59 tolerated(0.17) benign(0.141) TCGA-JW-A5VL-01 7 100491481 100491481 C G ACHE Missense_Mutation p.E125Q 0.39 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 7 100675173 100675173 C G MUC17 Nonsense_Mutation p.S159* 0.43 TCGA-JW-A5VL-01 7 100679611 100679611 C G MUC17 Silent p.V1638V 0.34 TCGA-JW-A5VL-01 7 100682996 100682996 G C MUC17 Missense_Mutation p.E2767Q 0.45 unknown(0) TCGA-JW-A5VL-01 7 100816784 100816784 C G NAT16 Silent p.V110V 0.34 TCGA-JW-A5VL-01 7 100861060 100861060 C T ZNHIT1 5'UTR 0.40 TCGA-JW-A5VL-01 7 100883427 100883427 C G FIS1 Missense_Mutation p.K119N 0.42 tolerated(0.14) benign(0.11) TCGA-JW-A5VL-01 7 102006471 102006471 C G PRKRIP1 5'UTR 0.38 TCGA-JW-A5VL-01 7 102065520 102065520 G A PRKRIP1 Missense_Mutation p.E173K 0.54 deleterious(0.02) possibly_damaging(0.621) TCGA-JW-A5VL-01 7 102065730 102065730 G C PRKRIP1 3'UTR 0.33 TCGA-JW-A5VL-01 7 102065804 102065804 G C PRKRIP1 3'UTR 0.47 TCGA-JW-A5VL-01 7 102066384 102066384 G T PRKRIP1 3'UTR 0.50 TCGA-JW-A5VL-01 7 102246302 102246302 C T RASA4 Intron 0.16 TCGA-JW-A5VL-01 7 103767296 103767296 C T ORC5 Silent p.%3D 0.48 TCGA-JW-A5VL-01 7 106299996 106299996 C T CCDC71L 3'UTR 0.39 TCGA-JW-A5VL-01 7 106508780 106508780 G C PIK3CG Silent p.L258L 0.47 TCGA-JW-A5VL-01 7 106851011 106851011 C G COG5 Missense_Mutation p.D810H 0.51 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 7 107312607 107312607 C T SLC26A4 Missense_Mutation p.A110V 0.31 deleterious(0.03) possibly_damaging(0.816) TCGA-JW-A5VL-01 7 107342344 107342344 G A SLC26A4 Missense_Mutation p.E626K 0.37 tolerated(0.09) benign(0.142) TCGA-JW-A5VL-01 7 108524529 108524529 G A C7orf66 Missense_Mutation p.H21Y 0.42 tolerated_low_confidence(0.07) possibly_damaging(0.607) TCGA-JW-A5VL-01 7 11101423 11101423 C T PHF14 Silent p.T829T 0.38 TCGA-JW-A5VL-01 7 111629071 111629071 C G DOCK4 Missense_Mutation p.E155Q 0.35 deleterious(0.05) possibly_damaging(0.77) TCGA-JW-A5VL-01 7 114655985 114655985 C T MDFIC Missense_Mutation p.S355L 0.30 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 7 116165054 116165054 C T CAV1 5'UTR 0.38 TCGA-JW-A5VL-01 7 116339698 116339698 C G MET Missense_Mutation p.S187C 0.31 deleterious(0.01) possibly_damaging(0.866) TCGA-JW-A5VL-01 7 11676040 11676040 C G THSD7A Missense_Mutation p.E247Q 0.39 tolerated(0.46) benign(0.349) TCGA-JW-A5VL-01 7 120387853 120387853 G A KCND2 Missense_Mutation p.D612N 0.35 tolerated_low_confidence(0.37) benign(0.001) TCGA-JW-A5VL-01 7 12675747 12675747 G C SCIN Missense_Mutation p.G466A 0.40 deleterious(0.01) benign(0.073) TCGA-JW-A5VL-01 7 127221932 127221932 C G GCC1 3'UTR 0.33 TCGA-JW-A5VL-01 7 127343372 127343372 C T SND1 Missense_Mutation p.H279Y 0.32 deleterious(0.04) possibly_damaging(0.737) TCGA-JW-A5VL-01 7 127667407 127667407 C G LRRC4 3'UTR 0.51 TCGA-JW-A5VL-01 7 128486083 128486083 C T FLNC Missense_Mutation p.A1277V 0.45 deleterious(0.01) possibly_damaging(0.816) TCGA-JW-A5VL-01 7 128498559 128498559 C G FLNC Missense_Mutation p.F2720L 0.36 deleterious(0) possibly_damaging(0.588) TCGA-JW-A5VL-01 7 128641126 128641126 C T TNPO3 Missense_Mutation p.E287K 0.36 deleterious(0) possibly_damaging(0.829) TCGA-JW-A5VL-01 7 128807381 128807381 C G TSPAN33 Missense_Mutation p.L244V 0.45 tolerated(0.08) possibly_damaging(0.803) TCGA-JW-A5VL-01 7 129688889 129688889 C G ZC3HC1 Missense_Mutation p.R81T 0.48 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 7 129987668 129987668 G C CPA5 Missense_Mutation p.E60Q 0.40 tolerated(0.17) benign(0.402) TCGA-JW-A5VL-01 7 131187814 131187814 G C PODXL 3'Flank 0.42 TCGA-JW-A5VL-01 7 132959806 132959806 G A EXOC4 Silent p.E52E 0.38 TCGA-JW-A5VL-01 7 138529164 138529164 G C KIAA1549 Missense_Mutation p.Q1784E 0.45 tolerated(0.34) benign(0.108) TCGA-JW-A5VL-01 7 140125875 140125875 G C RAB19 Silent p.L193L 0.41 TCGA-JW-A5VL-01 7 141478326 141478326 C G TAS2R4 Nonsense_Mutation p.S13* 0.40 TCGA-JW-A5VL-01 7 141833904 141833904 G C RP11-1220K2.2 Missense_Mutation p.M233I 0.39 deleterious(0.01) benign(0.099) TCGA-JW-A5VL-01 7 141889220 141889220 C T RP11-1220K2.2 Nonsense_Mutation p.Q1421* 0.26 TCGA-JW-A5VL-01 7 142573425 142573425 C T TRPV6 Silent p.Q306Q 0.43 TCGA-JW-A5VL-01 7 143453899 143453899 C G CTAGE6 Missense_Mutation p.E285Q 0.19 deleterious(0.02) probably_damaging(0.98) TCGA-JW-A5VL-01 7 143701854 143701854 C T OR6B1 Silent p.F255F 0.27 TCGA-JW-A5VL-01 7 143807474 143807474 G C OR2A2 Missense_Mutation p.E267Q 0.46 tolerated(0.24) benign(0.065) TCGA-JW-A5VL-01 7 148484149 148484149 G A CUL1 Silent p.K472K 0.54 TCGA-JW-A5VL-01 7 149419615 149419615 G C KRBA1 Missense_Mutation p.R190T 0.39 tolerated(0.09) benign(0.025) TCGA-JW-A5VL-01 7 150325418 150325418 C G GIMAP6 Missense_Mutation p.E90Q 0.44 tolerated(0.09) benign(0.212) TCGA-JW-A5VL-01 7 150491133 150491133 C G TMEM176B Silent p.V77V 0.57 TCGA-JW-A5VL-01 7 150647061 150647061 C T KCNH2 Intron 0.42 TCGA-JW-A5VL-01 7 150648870 150648870 C G KCNH2 Silent p.R537R 0.45 TCGA-JW-A5VL-01 7 150706116 150706116 G A NOS3 Silent p.L737L 0.42 TCGA-JW-A5VL-01 7 150706129 150706129 G T NOS3 Nonsense_Mutation p.E742* 0.45 TCGA-JW-A5VL-01 7 151860765 151860765 C T KMT2C Missense_Mutation p.M3299I 0.49 benign(0.001) TCGA-JW-A5VL-01 7 152520588 152520588 C T ACTR3B Silent p.F282F 0.44 TCGA-JW-A5VL-01 7 153584618 153584618 G A DPP6 5'UTR 0.40 TCGA-JW-A5VL-01 7 155604778 155604778 G C SHH Silent p.V13V 0.44 TCGA-JW-A5VL-01 7 16840805 16840805 G C AGR2 Missense_Mutation p.H76D 0.45 deleterious(0.01) probably_damaging(0.966) TCGA-JW-A5VL-01 7 20782555 20782555 G A ABCB5 Missense_Mutation p.R1027H 0.45 deleterious(0.01) benign(0.427) TCGA-JW-A5VL-01 7 21726796 21726796 G C DNAH11 Missense_Mutation p.E1908Q 0.44 probably_damaging(0.999) TCGA-JW-A5VL-01 7 21757390 21757390 C G DNAH11 Intron 0.38 TCGA-JW-A5VL-01 7 22532205 22532205 C T STEAP1B Nonsense_Mutation p.W247* 0.44 TCGA-JW-A5VL-01 7 2568053 2568053 C G LFNG 3'UTR 0.58 TCGA-JW-A5VL-01 7 2650277 2650277 G C IQCE 3'UTR 0.51 TCGA-JW-A5VL-01 7 2650455 2650455 G C IQCE 3'UTR 0.53 TCGA-JW-A5VL-01 7 27133621 27133621 C G HOXA1 3'UTR 0.42 TCGA-JW-A5VL-01 7 27935034 27935034 A T JAZF1 Missense_Mutation p.F64I 0.40 deleterious(0) probably_damaging(0.986) TCGA-JW-A5VL-01 7 28844035 28844035 C T CREB5 Nonsense_Mutation p.Q308* 0.43 TCGA-JW-A5VL-01 7 29606495 29606495 G A PRR15 3'UTR 0.31 TCGA-JW-A5VL-01 7 30118402 30118402 G C PLEKHA8 Nonstop_Mutation p.*520Sext*8 0.42 TCGA-JW-A5VL-01 7 31121330 31121330 G A ADCYAP1R1 Missense_Mutation p.E97K 0.40 tolerated(0.71) benign(0.003) TCGA-JW-A5VL-01 7 31380264 31380264 C G NEUROD6 5'UTR 0.42 TCGA-JW-A5VL-01 7 31614227 31614227 G T CCDC129 Nonsense_Mutation p.E183* 0.47 TCGA-JW-A5VL-01 7 32909521 32909521 C T KBTBD2 Silent p.L436L 0.34 TCGA-JW-A5VL-01 7 36463455 36463455 C G ANLN Missense_Mutation p.L836V 0.54 deleterious(0.01) probably_damaging(0.996) TCGA-JW-A5VL-01 7 38370249 38370249 G C TRGV8 Missense_Mutation p.Q17E 0.47 deleterious(0) probably_damaging(0.993) TCGA-JW-A5VL-01 7 40041617 40041617 C G CDK13 Missense_Mutation p.F780L 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-JW-A5VL-01 7 42959326 42959326 C G PSMA2 Intron 0.54 TCGA-JW-A5VL-01 7 43484309 43484309 C T HECW1 Missense_Mutation p.S513F 0.37 deleterious_low_confidence(0.03) benign(0.372) TCGA-JW-A5VL-01 7 43843292 43843292 G C BLVRA Missense_Mutation p.E160Q 0.41 tolerated(0.39) benign(0.016) TCGA-JW-A5VL-01 7 44070415 44070415 G A RASA4CP RNA 0.47 TCGA-JW-A5VL-01 7 44079656 44079656 G C DBNL 5'Flank 0.19 TCGA-JW-A5VL-01 7 44105092 44105092 C T PGAM2 Missense_Mutation p.E13K 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-JW-A5VL-01 7 44524810 44524810 C T NUDCD3 Missense_Mutation p.R89K 0.44 tolerated(0.76) benign(0) TCGA-JW-A5VL-01 7 44530254 44530254 G C NUDCD3 5'UTR 0.42 TCGA-JW-A5VL-01 7 44796622 44796622 C T ZMIZ2 Missense_Mutation p.S81F 0.42 tolerated(0.63) benign(0.418) TCGA-JW-A5VL-01 7 48315793 48315793 G C ABCA13 Missense_Mutation p.R2177T 0.28 benign(0.066) TCGA-JW-A5VL-01 7 48431563 48431563 C G ABCA13 Missense_Mutation p.I3900M 0.23 possibly_damaging(0.793) TCGA-JW-A5VL-01 7 4959870 4959870 G T MMD2 Silent p.L74L 0.48 TCGA-JW-A5VL-01 7 51098509 51098509 C T COBL Missense_Mutation p.E502K 0.42 tolerated(0.12) possibly_damaging(0.848) TCGA-JW-A5VL-01 7 5372257 5372257 C T TNRC18 Missense_Mutation p.R2048K 0.38 benign(0.067) TCGA-JW-A5VL-01 7 5541201 5541201 G A FBXL18 Silent p.F233F 0.47 TCGA-JW-A5VL-01 7 5632933 5632933 C G FSCN1 Missense_Mutation p.F122L 0.25 deleterious(0) benign(0.298) TCGA-JW-A5VL-01 7 5632988 5632988 C G FSCN1 Missense_Mutation p.Q141E 0.32 deleterious(0) probably_damaging(0.975) TCGA-JW-A5VL-01 7 5632993 5632993 C G FSCN1 Silent p.V142V 0.50 TCGA-JW-A5VL-01 7 5800731 5800731 G C RNF216 5'UTR 0.38 TCGA-JW-A5VL-01 7 6066550 6066550 G A EIF2AK1 Nonsense_Mutation p.Q525* 0.38 TCGA-JW-A5VL-01 7 64863490 64863490 C T ZNF92 Missense_Mutation p.H155Y 0.53 tolerated(0.25) possibly_damaging(0.752) TCGA-JW-A5VL-01 7 65425743 65425743 C T GUSB 3'UTR 0.43 TCGA-JW-A5VL-01 7 65439917 65439917 C T GUSB Missense_Mutation p.E352K 0.31 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 7 65551611 65551611 G C ASL Missense_Mutation p.Q162H 0.39 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 7 65617276 65617276 G C CRCP Missense_Mutation p.E127Q 0.25 tolerated(0.25) benign(0.048) TCGA-JW-A5VL-01 7 65617299 65617299 G C CRCP Missense_Mutation p.K134N 0.21 tolerated_low_confidence(0.24) benign(0.001) TCGA-JW-A5VL-01 7 65821815 65821815 G A TPST1 Missense_Mutation p.E367K 0.39 tolerated_low_confidence(0.81) benign(0) TCGA-JW-A5VL-01 7 66406843 66406843 G C TMEM248 5'UTR 0.38 TCGA-JW-A5VL-01 7 70255988 70255988 G C AUTS2 3'UTR 0.38 TCGA-JW-A5VL-01 7 70853384 70853384 G A WBSCR17 Missense_Mutation p.E196K 0.54 deleterious(0.03) benign(0.141) TCGA-JW-A5VL-01 7 72683349 72683349 C T GTF2IRD2P1 RNA 0.53 TCGA-JW-A5VL-01 7 73008611 73008611 G C MLXIPL Silent p.L811L 0.32 TCGA-JW-A5VL-01 7 75510757 75510757 C T RHBDD2 Intron 0.38 TCGA-JW-A5VL-01 7 76139944 76139944 G A UPK3B 5'UTR 0.46 TCGA-JW-A5VL-01 7 76139945 76139945 A C UPK3B 5'UTR 0.46 TCGA-JW-A5VL-01 7 80300396 80300396 G A CD36 Missense_Mutation p.D308N 0.49 deleterious(0.02) possibly_damaging(0.8) TCGA-JW-A5VL-01 7 82545481 82545481 G T PCLO Missense_Mutation p.Q3941K 0.35 unknown(0) TCGA-JW-A5VL-01 7 86509485 86509485 C T KIAA1324L 3'UTR 0.47 TCGA-JW-A5VL-01 7 87537145 87537145 G C DBF4 Missense_Mutation p.K564N 0.44 tolerated(0.55) benign(0.02) TCGA-JW-A5VL-01 7 90356041 90356041 C G CDK14 Missense_Mutation p.S77C 0.48 deleterious_low_confidence(0) possibly_damaging(0.629) TCGA-JW-A5VL-01 7 92905519 92905519 C G CCDC132 Missense_Mutation p.H282D 0.40 deleterious(0.01) probably_damaging(0.935) TCGA-JW-A5VL-01 7 95216836 95216836 G A PDK4 Missense_Mutation p.S292L 0.30 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 7 97369782 97369782 G A TAC1 3'UTR 0.52 TCGA-JW-A5VL-01 7 97920828 97920828 C T BRI3 3'UTR 0.29 TCGA-JW-A5VL-01 7 98550892 98550892 G A TRRAP Missense_Mutation p.D1849N 0.37 possibly_damaging(0.696) TCGA-JW-A5VL-01 7 98625787 98625787 C T SMURF1 3'UTR 0.42 TCGA-JW-A5VL-01 7 99096390 99096390 C T ZNF394 Missense_Mutation p.D178N 0.37 tolerated(0.16) benign(0.024) TCGA-JW-A5VL-01 7 99262807 99262807 G C CYP3A5 Missense_Mutation p.P218A 0.51 deleterious(0) possibly_damaging(0.781) TCGA-JW-A5VL-01 7 99661584 99661584 G C ZSCAN21 Missense_Mutation p.E256Q 0.48 tolerated(0.49) benign(0.063) TCGA-JW-A5VL-01 8 100147948 100147948 C T VPS13B Missense_Mutation p.S517L 0.25 tolerated(0.26) benign(0) TCGA-JW-A5VL-01 8 100844848 100844848 C T VPS13B Silent p.L3219L 0.47 TCGA-JW-A5VL-01 8 100994308 100994308 G A RGS22 Nonsense_Mutation p.Q1073* 0.19 TCGA-JW-A5VL-01 8 101154311 101154311 G C FBXO43 Silent p.V57V 0.14 TCGA-JW-A5VL-01 8 101270981 101270981 G C RNF19A Missense_Mutation p.Q774E 0.18 tolerated_low_confidence(0.05) benign(0.016) TCGA-JW-A5VL-01 8 102731624 102731624 C T NCALD Silent p.G78G 0.16 TCGA-JW-A5VL-01 8 103840094 103840094 G T AZIN1 3'UTR 0.20 TCGA-JW-A5VL-01 8 104258641 104258641 G A RP11-318M2.2 RNA 0.26 TCGA-JW-A5VL-01 8 104513169 104513169 C G RIMS2 Missense_Mutation p.Q19E 0.20 tolerated_low_confidence(1) benign(0.003) TCGA-JW-A5VL-01 8 105511574 105511574 C G LRP12 Missense_Mutation p.R149T 0.25 tolerated(0.08) benign(0.396) TCGA-JW-A5VL-01 8 108913363 108913363 C T RSPO2 Silent p.L224L 0.42 TCGA-JW-A5VL-01 8 110478968 110478968 G C PKHD1L1 Missense_Mutation p.E2859Q 0.20 tolerated(0.1) possibly_damaging(0.78) TCGA-JW-A5VL-01 8 110587893 110587893 C T SYBU Missense_Mutation p.D412N 0.24 deleterious(0.03) possibly_damaging(0.76) TCGA-JW-A5VL-01 8 110587935 110587935 C T SYBU Missense_Mutation p.E398K 0.27 tolerated(0.69) benign(0.005) TCGA-JW-A5VL-01 8 110654959 110654959 G C SYBU Nonsense_Mutation p.S76* 0.24 TCGA-JW-A5VL-01 8 113349922 113349922 G T CSMD3 Silent p.R2231R 0.34 TCGA-JW-A5VL-01 8 117878870 117878870 G A RAD21 Silent p.F33F 0.19 TCGA-JW-A5VL-01 8 118533247 118533247 C G MED30 Missense_Mutation p.I44M 0.45 deleterious(0) probably_damaging(0.982) TCGA-JW-A5VL-01 8 119391817 119391817 G C SAMD12 Missense_Mutation p.L149V 0.27 deleterious(0) possibly_damaging(0.636) TCGA-JW-A5VL-01 8 11995849 11995849 G A USP17L2 Missense_Mutation p.H141Y 0.75 tolerated(0.05) benign(0.089) TCGA-JW-A5VL-01 8 11996239 11996239 C G USP17L2 Missense_Mutation p.E11Q 0.54 tolerated(0.11) benign(0.08) TCGA-JW-A5VL-01 8 12040405 12040405 G C FAM86B1 3'UTR 0.50 TCGA-JW-A5VL-01 8 120596225 120596225 C G ENPP2 Missense_Mutation p.D530H 0.45 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 8 120628552 120628552 G A ENPP2 Silent p.L244L 0.19 TCGA-JW-A5VL-01 8 121301998 121301998 C G COL14A1 Missense_Mutation p.S1410C 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-JW-A5VL-01 8 121644796 121644796 G C SNTB1 Missense_Mutation p.S295C 0.17 deleterious(0.01) benign(0.073) TCGA-JW-A5VL-01 8 125499471 125499471 G A RNF139 Silent p.K527K 0.10 TCGA-JW-A5VL-01 8 125565503 125565503 G A MTSS1 Silent p.S666S 0.24 TCGA-JW-A5VL-01 8 126449981 126449981 C G TRIB1 3'UTR 0.33 TCGA-JW-A5VL-01 8 128752825 128752825 C T MYC Missense_Mutation p.S329F 0.21 tolerated(0.48) possibly_damaging(0.776) TCGA-JW-A5VL-01 8 12883591 12883591 C T KIAA1456 3'UTR 0.62 TCGA-JW-A5VL-01 8 130864412 130864412 G A FAM49B Missense_Mutation p.S210L 0.47 deleterious(0.03) possibly_damaging(0.549) TCGA-JW-A5VL-01 8 130891638 130891638 C T FAM49B Missense_Mutation p.E24K 0.12 deleterious(0) benign(0.35) TCGA-JW-A5VL-01 8 131880181 131880181 C G ADCY8 Missense_Mutation p.M707I 0.28 tolerated(0.24) benign(0.273) TCGA-JW-A5VL-01 8 133051046 133051046 G C OC90 Missense_Mutation p.L207V 0.42 tolerated(0.35) possibly_damaging(0.763) TCGA-JW-A5VL-01 8 133492601 133492601 C G KCNQ3 Missense_Mutation p.G60A 0.28 tolerated(0.22) probably_damaging(0.995) TCGA-JW-A5VL-01 8 133858144 133858144 G A PHF20L1 Silent p.Q1010Q 0.21 TCGA-JW-A5VL-01 8 135600571 135600571 C G ZFAT Missense_Mutation p.K877N 0.27 deleterious(0) probably_damaging(0.957) TCGA-JW-A5VL-01 8 135649857 135649857 C T ZFAT Missense_Mutation p.E99K 0.23 tolerated(0.26) benign(0.026) TCGA-JW-A5VL-01 8 139158199 139158199 T C FAM135B Intron 0.16 TCGA-JW-A5VL-01 8 140898187 140898187 C T TRAPPC9 Silent p.A1095A 0.26 TCGA-JW-A5VL-01 8 142200469 142200469 G A DENND3 Missense_Mutation p.R1031Q 0.42 tolerated(0.29) benign(0.034) TCGA-JW-A5VL-01 8 143692669 143692669 G C ARC 3'UTR 0.50 TCGA-JW-A5VL-01 8 143817178 143817178 G C THEM6 3'UTR 0.23 TCGA-JW-A5VL-01 8 143993285 143993285 G A CYP11B2 3'UTR 0.23 TCGA-JW-A5VL-01 8 144332331 144332331 G C ZFP41 Missense_Mutation p.Q106H 0.49 tolerated(0.36) possibly_damaging(0.871) TCGA-JW-A5VL-01 8 144657483 144657483 C G NAPRT1 Missense_Mutation p.E442Q 0.44 tolerated(0.14) possibly_damaging(0.67) TCGA-JW-A5VL-01 8 144681231 144681231 C T TIGD5 Silent p.L386L 0.56 TCGA-JW-A5VL-01 8 144734639 144734639 C T ZNF623 3'UTR 0.21 TCGA-JW-A5VL-01 8 144735494 144735494 C G ZNF623 3'UTR 0.11 TCGA-JW-A5VL-01 8 144904725 144904725 C G PUF60 Intron 0.40 TCGA-JW-A5VL-01 8 144942649 144942649 C G EPPK1 Silent p.L1591L 0.21 TCGA-JW-A5VL-01 8 144942883 144942883 C G EPPK1 Missense_Mutation p.E1513D 0.13 benign(0.011) TCGA-JW-A5VL-01 8 144943044 144943044 C G EPPK1 Missense_Mutation p.G1460R 0.19 probably_damaging(0.999) TCGA-JW-A5VL-01 8 144945320 144945320 G C EPPK1 Missense_Mutation p.S701C 0.40 probably_damaging(1) TCGA-JW-A5VL-01 8 145006129 145006129 C T PLEC Silent p.L855L 0.17 TCGA-JW-A5VL-01 8 145012332 145012332 G A PLEC Missense_Mutation p.S221L 0.45 unknown(0) TCGA-JW-A5VL-01 8 145024811 145024811 C T PLEC Missense_Mutation p.E22K 0.24 unknown(0) TCGA-JW-A5VL-01 8 145268133 145268133 C G MROH1 Intron 0.25 TCGA-JW-A5VL-01 8 145535024 145535024 C G HSF1 Missense_Mutation p.I194M 0.23 deleterious(0.02) benign(0.219) TCGA-JW-A5VL-01 8 145540570 145540570 C A DGAT1 Silent p.V419V 0.57 TCGA-JW-A5VL-01 8 145623321 145623321 C G CPSF1 Missense_Mutation p.D641H 0.23 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 8 145624235 145624235 C G CPSF1 Silent p.V524V 0.25 TCGA-JW-A5VL-01 8 145624241 145624241 C T CPSF1 Silent p.Q522Q 0.26 TCGA-JW-A5VL-01 8 145724337 145724337 C T PPP1R16A Silent p.L123L 0.21 TCGA-JW-A5VL-01 8 145748952 145748952 C G LRRC14 3'UTR 0.20 TCGA-JW-A5VL-01 8 145755731 145755731 C G ARHGAP39 3'UTR 0.18 TCGA-JW-A5VL-01 8 17726235 17726235 C G FGL1 Missense_Mutation p.E201Q 0.71 tolerated(0.93) benign(0.03) TCGA-JW-A5VL-01 8 22547822 22547822 G A EGR3 3'UTR 0.79 TCGA-JW-A5VL-01 8 23243543 23243543 C T LOXL2 Intron 0.74 TCGA-JW-A5VL-01 8 26270632 26270632 C G BNIP3L 3'UTR 0.50 TCGA-JW-A5VL-01 8 33346281 33346281 G C MAK16 Missense_Mutation p.E69Q 0.71 deleterious(0) probably_damaging(0.978) TCGA-JW-A5VL-01 8 33454935 33454935 C T DUSP26 Silent p.E33E 0.54 TCGA-JW-A5VL-01 8 37729373 37729373 C A RAB11FIP1 Nonsense_Mutation p.E983* 0.58 TCGA-JW-A5VL-01 8 38034392 38034392 C T BAG4 Missense_Mutation p.S2L 0.44 deleterious_low_confidence(0) unknown(0) TCGA-JW-A5VL-01 8 38068336 38068336 C G BAG4 3'UTR 0.41 TCGA-JW-A5VL-01 8 38172265 38172265 C T WHSC1L1 Silent p.L714L 0.33 TCGA-JW-A5VL-01 8 38874802 38874802 G C ADAM9 Missense_Mutation p.E159Q 0.41 tolerated(0.26) benign(0.264) TCGA-JW-A5VL-01 8 38874932 38874932 G C ADAM9 Missense_Mutation p.R202P 0.28 deleterious(0) probably_damaging(0.988) TCGA-JW-A5VL-01 8 39133369 39133369 C G ADAM32 Missense_Mutation p.Q755E 0.36 tolerated_low_confidence(0.35) benign(0.217) TCGA-JW-A5VL-01 8 39806742 39806742 C G IDO2 Missense_Mutation p.H33D 0.44 tolerated(0.07) benign(0.193) TCGA-JW-A5VL-01 8 40554830 40554830 G C ZMAT4 Missense_Mutation p.Q95E 0.51 deleterious(0.03) probably_damaging(0.994) TCGA-JW-A5VL-01 8 41547781 41547781 G A ANK1 Silent p.L1397L 0.41 TCGA-JW-A5VL-01 8 48751794 48751794 C T PRKDC Missense_Mutation p.E2489K 0.49 benign(0.001) TCGA-JW-A5VL-01 8 48839863 48839863 C T PRKDC Silent p.L770L 0.37 TCGA-JW-A5VL-01 8 48880005 48880005 C G MCM4 Silent p.L378L 0.37 TCGA-JW-A5VL-01 8 61779302 61779302 G A CHD7 3'UTR 0.40 TCGA-JW-A5VL-01 8 62465592 62465592 C G ASPH Missense_Mutation p.E542Q 0.30 deleterious(0.04) benign(0.075) TCGA-JW-A5VL-01 8 63927960 63927960 C T GGH Silent p.L296L 0.35 TCGA-JW-A5VL-01 8 64123780 64123780 C T YTHDF3 3'UTR 0.41 TCGA-JW-A5VL-01 8 67428146 67428146 G C C8orf46 Missense_Mutation p.K153N 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-JW-A5VL-01 8 67579043 67579043 C G VCPIP1 Missense_Mutation p.D51H 0.31 deleterious(0) possibly_damaging(0.904) TCGA-JW-A5VL-01 8 68139489 68139489 G C ARFGEF1 Missense_Mutation p.Q1267E 0.37 deleterious(0) probably_damaging(0.996) TCGA-JW-A5VL-01 8 71036975 71036975 G C NCOA2 Missense_Mutation p.Q1348E 0.44 deleterious(0) probably_damaging(0.989) TCGA-JW-A5VL-01 8 80677410 80677410 C G HEY1 3'UTR 0.38 TCGA-JW-A5VL-01 8 80942405 80942405 G A MRPS28 Missense_Mutation p.R27W 0.62 deleterious(0) probably_damaging(0.971) TCGA-JW-A5VL-01 8 86089801 86089801 G A E2F5 Missense_Mutation p.S49N 0.67 tolerated(0.06) unknown(0) TCGA-JW-A5VL-01 8 87076230 87076230 C G PSKH2 Missense_Mutation p.R272S 0.62 tolerated(0.08) possibly_damaging(0.507) TCGA-JW-A5VL-01 8 87479236 87479236 C T WWP1 3'UTR 0.51 TCGA-JW-A5VL-01 8 87479460 87479460 C T WWP1 3'UTR 0.50 TCGA-JW-A5VL-01 8 91635715 91635715 G C TMEM64 3'UTR 0.40 TCGA-JW-A5VL-01 8 92145429 92145429 C T LRRC69 Nonsense_Mutation p.Q159* 0.60 TCGA-JW-A5VL-01 8 92375748 92375748 G A SLC26A7 Silent p.V490V 0.55 TCGA-JW-A5VL-01 8 93897272 93897272 C G TRIQK 3'UTR 0.69 TCGA-JW-A5VL-01 8 94747681 94747681 C G RBM12B Missense_Mutation p.D320H 0.15 tolerated(0.18) probably_damaging(0.95) TCGA-JW-A5VL-01 8 94747717 94747717 C G RBM12B Missense_Mutation p.D308H 0.16 deleterious(0.03) probably_damaging(1) TCGA-JW-A5VL-01 8 94929293 94929293 C T PDP1 5'UTR 0.22 TCGA-JW-A5VL-01 8 95390835 95390835 G A RAD54B Nonsense_Mutation p.Q759* 0.34 TCGA-JW-A5VL-01 8 95479678 95479678 C G RAD54B Silent p.L30L 0.17 TCGA-JW-A5VL-01 8 95674553 95674553 G C ESRP1 Missense_Mutation p.E182Q 0.31 tolerated(0.99) benign(0.007) TCGA-JW-A5VL-01 8 98699729 98699729 C G MTDH Missense_Mutation p.S214C 0.18 tolerated(0.12) benign(0.001) TCGA-JW-A5VL-01 8 99030257 99030257 G C MATN2 Missense_Mutation p.E578Q 0.27 tolerated(0.43) probably_damaging(0.982) TCGA-JW-A5VL-01 8 99118528 99118528 C G HRSP12 Silent p.L66L 0.26 TCGA-JW-A5VL-01 9 100447309 100447309 G A XPA Missense_Mutation p.S190F 0.55 deleterious(0) possibly_damaging(0.813) TCGA-JW-A5VL-01 9 100449429 100449429 C T XPA Silent p.K168K 0.27 TCGA-JW-A5VL-01 9 100849773 100849773 G A TRIM14 Silent p.I436I 0.33 TCGA-JW-A5VL-01 9 100889065 100889065 C T CORO2A Silent p.L404L 0.59 TCGA-JW-A5VL-01 9 100890986 100890986 C G CORO2A Missense_Mutation p.R328T 0.27 deleterious(0.02) possibly_damaging(0.836) TCGA-JW-A5VL-01 9 100892173 100892173 C G CORO2A Splice_Site p.X291_splice 0.32 TCGA-JW-A5VL-01 9 100894464 100894464 C T CORO2A Intron 0.59 TCGA-JW-A5VL-01 9 102626498 102626498 C T NR4A3 3'UTR 0.22 TCGA-JW-A5VL-01 9 102626641 102626641 G C NR4A3 3'UTR 0.66 TCGA-JW-A5VL-01 9 103015233 103015233 C G INVS Missense_Mutation p.L427V 0.16 deleterious(0.04) probably_damaging(0.921) TCGA-JW-A5VL-01 9 103054935 103054935 G A INVS Missense_Mutation p.R799K 0.48 tolerated_low_confidence(0.68) benign(0.001) TCGA-JW-A5VL-01 9 103102638 103102638 C T TEX10 Missense_Mutation p.R384Q 0.32 deleterious(0.03) possibly_damaging(0.801) TCGA-JW-A5VL-01 9 104152783 104152783 G A MRPL50 Silent p.L148L 0.58 TCGA-JW-A5VL-01 9 108226568 108226568 C T FSD1L Nonsense_Mutation p.Q55* 0.59 TCGA-JW-A5VL-01 9 111936068 111936068 C G EPB41L4B 3'UTR 0.63 TCGA-JW-A5VL-01 9 112018705 112018705 C G EPB41L4B Missense_Mutation p.E270Q 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-JW-A5VL-01 9 113170580 113170580 C G SVEP1 Missense_Mutation p.E2434Q 0.73 probably_damaging(0.986) TCGA-JW-A5VL-01 9 114304503 114304503 G A ZNF483 Missense_Mutation p.E430K 0.56 tolerated(0.33) possibly_damaging(0.621) TCGA-JW-A5VL-01 9 115805337 115805337 G A ZFP37 Nonsense_Mutation p.Q521* 0.20 TCGA-JW-A5VL-01 9 115932861 115932861 C G FKBP15 Missense_Mutation p.E903Q 0.61 deleterious(0.02) possibly_damaging(0.791) TCGA-JW-A5VL-01 9 116093370 116093370 C T WDR31 Missense_Mutation p.R48K 0.52 tolerated(0.95) benign(0.002) TCGA-JW-A5VL-01 9 116224348 116224348 G C RGS3 Missense_Mutation p.L94F 0.56 deleterious_low_confidence(0) benign(0.013) TCGA-JW-A5VL-01 9 116356554 116356554 G C RGS3 Intron 0.56 TCGA-JW-A5VL-01 9 116356797 116356797 G C RGS3 Missense_Mutation p.M1056I 0.52 tolerated(0.24) benign(0.025) TCGA-JW-A5VL-01 9 116814554 116814554 G A ZNF618 3'UTR 0.44 TCGA-JW-A5VL-01 9 117037965 117037965 G C COL27A1 Missense_Mutation p.D1212H 0.58 probably_damaging(0.997) TCGA-JW-A5VL-01 9 117103902 117103902 C T AKNA Nonsense_Mutation p.W1326* 0.60 TCGA-JW-A5VL-01 9 119159684 119159684 C G PAPPA 3'UTR 0.61 TCGA-JW-A5VL-01 9 119462163 119462163 C T TRIM32 3'UTR 0.61 TCGA-JW-A5VL-01 9 121487 121487 C T CBWD1 Missense_Mutation p.E390K 0.32 tolerated_low_confidence(0.13) benign(0.076) TCGA-JW-A5VL-01 9 123165171 123165171 C T CDK5RAP2 Silent p.Q1740Q 0.50 TCGA-JW-A5VL-01 9 124086857 124086857 G C GSN Missense_Mutation p.E502Q 0.58 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 9 124751992 124751992 C G TTLL11 Missense_Mutation p.D341H 0.29 deleterious(0) probably_damaging(0.995) TCGA-JW-A5VL-01 9 125377527 125377527 G C OR1Q1 Missense_Mutation p.D171H 0.31 tolerated(0.22) possibly_damaging(0.854) TCGA-JW-A5VL-01 9 125424911 125424911 G C OR1L1 Missense_Mutation p.R306T 0.62 deleterious(0.01) benign(0.342) TCGA-JW-A5VL-01 9 125670869 125670869 C G ZBTB6 3'UTR 0.25 TCGA-JW-A5VL-01 9 125673859 125673859 C T ZBTB6 Missense_Mutation p.E165K 0.20 tolerated(0.4) possibly_damaging(0.757) TCGA-JW-A5VL-01 9 127640716 127640716 C T GOLGA1 3'UTR 0.58 TCGA-JW-A5VL-01 9 128113141 128113141 G A GAPVD1 Missense_Mutation p.E1214K 0.30 deleterious(0) possibly_damaging(0.551) TCGA-JW-A5VL-01 9 130210804 130210804 G C RPL12 Intron 0.50 TCGA-JW-A5VL-01 9 130486931 130486931 C T TTC16 Intron 0.70 TCGA-JW-A5VL-01 9 130922669 130922669 C T C9orf16 5'UTR 0.30 TCGA-JW-A5VL-01 9 130931345 130931345 C T CIZ1 Missense_Mutation p.E761K 0.51 deleterious(0.04) benign(0.097) TCGA-JW-A5VL-01 9 130931351 130931351 C T CIZ1 Missense_Mutation p.E759K 0.51 deleterious(0.04) benign(0.423) TCGA-JW-A5VL-01 9 131085386 131085386 C T COQ4 Silent p.A54A 0.39 TCGA-JW-A5VL-01 9 131186797 131186797 G A CERCAM Missense_Mutation p.E224K 0.52 deleterious(0.04) benign(0.005) TCGA-JW-A5VL-01 9 131193546 131193546 G A CERCAM Silent p.V389V 0.24 TCGA-JW-A5VL-01 9 131222495 131222495 G C ODF2 Intron 0.21 TCGA-JW-A5VL-01 9 131222562 131222562 G C ODF2 Intron 0.24 TCGA-JW-A5VL-01 9 131222883 131222883 G A ODF2 Intron 0.23 TCGA-JW-A5VL-01 9 131223280 131223280 G C ODF2 Silent p.V61V 0.18 TCGA-JW-A5VL-01 9 131395165 131395165 G A SPTAN1 Silent p.E2413E 0.33 TCGA-JW-A5VL-01 9 131554812 131554812 C G TBC1D13 Missense_Mutation p.F114L 0.62 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 9 131586097 131586097 C T C9orf114 Missense_Mutation p.E331K 0.26 deleterious(0.04) benign(0.026) TCGA-JW-A5VL-01 9 132375857 132375857 C T C9orf50 Silent p.V300V 0.28 TCGA-JW-A5VL-01 9 133759498 133759498 G A ABL1 Silent p.K626K 0.19 TCGA-JW-A5VL-01 9 133963004 133963004 G A LAMC3 Missense_Mutation p.E1458K 0.50 tolerated(0.25) benign(0.009) TCGA-JW-A5VL-01 9 134039315 134039315 C G NUP214 Missense_Mutation p.H928D 0.05 benign(0.232) TCGA-JW-A5VL-01 9 134503309 134503309 C T RAPGEF1 Missense_Mutation p.E399K 0.21 deleterious(0.01) probably_damaging(0.932) TCGA-JW-A5VL-01 9 135702440 135702440 C G AK8 Missense_Mutation p.E186D 0.57 tolerated(0.58) probably_damaging(0.996) TCGA-JW-A5VL-01 9 135973188 135973188 C T RALGDS 3'UTR 0.22 TCGA-JW-A5VL-01 9 136216849 136216849 G A RPL7A Silent p.E119E 0.33 TCGA-JW-A5VL-01 9 136223814 136223814 G C SURF2 Missense_Mutation p.E35Q 0.39 probably_damaging(1) TCGA-JW-A5VL-01 9 136227994 136227994 C T SURF2 Silent p.S250S 0.51 TCGA-JW-A5VL-01 9 136338667 136338667 G A SLC2A6 Silent p.P364P 0.27 TCGA-JW-A5VL-01 9 136898278 136898278 G A BRD3 3'UTR 0.75 TCGA-JW-A5VL-01 9 138586008 138586008 C G SOHLH1 Intron 0.45 TCGA-JW-A5VL-01 9 139389035 139389035 C G NOTCH1 3'UTR 0.61 TCGA-JW-A5VL-01 9 139410136 139410136 C T NOTCH1 Missense_Mutation p.D568N 0.56 tolerated(1) benign(0.001) TCGA-JW-A5VL-01 9 139840540 139840540 G T C8G Missense_Mutation p.R117L 0.28 deleterious(0) possibly_damaging(0.762) TCGA-JW-A5VL-01 9 140099867 140099867 C T TMEM203 5'UTR 0.53 TCGA-JW-A5VL-01 9 140119496 140119496 G A C9orf169 5'Flank 0.64 TCGA-JW-A5VL-01 9 140446917 140446917 C T MRPL41 Silent p.F128F 0.34 TCGA-JW-A5VL-01 9 140729282 140729282 C T EHMT1 Silent p.C1258C 0.26 TCGA-JW-A5VL-01 9 140777216 140777216 C G CACNA1B Missense_Mutation p.F137L 0.42 deleterious(0) possibly_damaging(0.787) TCGA-JW-A5VL-01 9 141107619 141107619 C G FAM157B RNA 0.43 TCGA-JW-A5VL-01 9 16410610 16410610 C G BNC2 3'UTR 0.45 TCGA-JW-A5VL-01 9 16436226 16436226 C T BNC2 Missense_Mutation p.E656K 0.57 tolerated(0.36) benign(0.021) TCGA-JW-A5VL-01 9 23701541 23701541 G C ELAVL2 Missense_Mutation p.I183M 0.60 deleterious(0.03) possibly_damaging(0.903) TCGA-JW-A5VL-01 9 23762104 23762104 G A ELAVL2 Silent p.V43V 0.48 TCGA-JW-A5VL-01 9 25677788 25677788 C G TUSC1 Missense_Mutation p.E178Q 0.60 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-JW-A5VL-01 9 2643322 2643322 C G VLDLR Missense_Mutation p.S204C 0.23 tolerated(0.1) possibly_damaging(0.676) TCGA-JW-A5VL-01 9 27062636 27062636 G C IFT74 Missense_Mutation p.E569Q 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-JW-A5VL-01 9 2831026 2831026 C T KIAA0020 Missense_Mutation p.D205N 0.49 tolerated(0.43) benign(0.002) TCGA-JW-A5VL-01 9 334240 334240 G C DOCK8 Missense_Mutation p.E381Q 0.33 deleterious(0) probably_damaging(0.989) TCGA-JW-A5VL-01 9 34370618 34370618 C T KIAA1161 3'UTR 0.36 TCGA-JW-A5VL-01 9 34646747 34646747 G C GALT Missense_Mutation p.E16Q 0.61 deleterious_low_confidence(0.04) benign(0.287) TCGA-JW-A5VL-01 9 35310582 35310582 C T UNC13B Missense_Mutation p.H294Y 0.29 tolerated_low_confidence(0.08) benign(0.001) TCGA-JW-A5VL-01 9 36190891 36190891 G C CLTA 5'Flank 0.30 TCGA-JW-A5VL-01 9 37503116 37503116 G C POLR1E Missense_Mutation p.D393H 0.34 deleterious(0.03) benign(0.019) TCGA-JW-A5VL-01 9 37592434 37592434 G C TOMM5 Silent p.L32L 0.59 TCGA-JW-A5VL-01 9 382539 382539 C G DOCK8 Missense_Mutation p.R878G 0.29 tolerated(0.37) benign(0.004) TCGA-JW-A5VL-01 9 38395833 38395833 C G ALDH1B1 Missense_Mutation p.L30V 0.27 tolerated(0.39) benign(0.022) TCGA-JW-A5VL-01 9 3898693 3898693 G A GLIS3 Missense_Mutation p.S709L 0.49 tolerated(0.15) benign(0.092) TCGA-JW-A5VL-01 9 40715965 40715965 G C FAM74A3 RNA 0.25 TCGA-JW-A5VL-01 9 421049 421049 G C DOCK8 Missense_Mutation p.R1375T 0.28 deleterious(0) probably_damaging(0.968) TCGA-JW-A5VL-01 9 4622463 4622463 C G SPATA6L Missense_Mutation p.L181F 0.22 tolerated(0.07) benign(0.137) TCGA-JW-A5VL-01 9 463533 463533 G C DOCK8 Missense_Mutation p.E2029Q 0.55 deleterious(0.04) probably_damaging(0.925) TCGA-JW-A5VL-01 9 6328703 6328703 C G TPD52L3 Silent p.L36L 0.34 TCGA-JW-A5VL-01 9 6330070 6330070 C G TPD52L3 3'UTR 0.66 TCGA-JW-A5VL-01 9 6605200 6605200 G C GLDC Missense_Mutation p.F264L 0.25 tolerated(1) benign(0.156) TCGA-JW-A5VL-01 9 66553844 66553844 C T RP11-262H14.4 RNA 0.14 TCGA-JW-A5VL-01 9 71152191 71152191 C G TMEM252 Missense_Mutation p.R166P 0.30 tolerated(0.23) benign(0.001) TCGA-JW-A5VL-01 9 71864376 71864376 C T TJP2 Missense_Mutation p.P1020L 0.30 deleterious(0.01) possibly_damaging(0.897) TCGA-JW-A5VL-01 9 72006623 72006623 C G FAM189A2 Missense_Mutation p.T419R 0.22 deleterious(0) benign(0.444) TCGA-JW-A5VL-01 9 72741133 72741133 C G MAMDC2 Silent p.L234L 0.55 TCGA-JW-A5VL-01 9 734574 734574 G C KANK1 Intron 0.30 TCGA-JW-A5VL-01 9 74327133 74327133 G A TMEM2 Missense_Mutation p.H879Y 0.41 tolerated(1) benign(0.048) TCGA-JW-A5VL-01 9 74361180 74361180 C A TMEM2 Nonsense_Mutation p.E137* 0.25 TCGA-JW-A5VL-01 9 74365015 74365015 G A TMEM2 Missense_Mutation p.S92L 0.24 tolerated(0.24) benign(0.005) TCGA-JW-A5VL-01 9 79002231 79002231 C G RFK 3'UTR 0.65 TCGA-JW-A5VL-01 9 84532641 84532641 C T SPATA31D5P RNA 0.57 TCGA-JW-A5VL-01 9 8518128 8518128 C T PTPRD Silent p.P421P 0.64 TCGA-JW-A5VL-01 9 88941309 88941309 G C ZCCHC6 Intron 0.80 TCGA-JW-A5VL-01 9 91609464 91609464 C T C9orf47 3'UTR 0.33 TCGA-JW-A5VL-01 9 94172030 94172030 G C NFIL3 Missense_Mutation p.I329M 0.53 deleterious(0) probably_damaging(1) TCGA-JW-A5VL-01 9 95077787 95077787 G A NOL8 Missense_Mutation p.R374C 0.61 tolerated(0.7) benign(0) TCGA-JW-A5VL-01 9 95473918 95473918 C G BICD2 3'UTR 0.60 TCGA-JW-A5VL-01 9 95474355 95474355 C G BICD2 3'UTR 0.33 TCGA-JW-A5VL-01 9 97686290 97686290 C T C9orf3 Nonsense_Mutation p.Q463* 0.29 TCGA-JW-A5VL-01 9 98638102 98638102 C G ERCC6L2 5'UTR 0.26 TCGA-JW-A5VL-01 9 98643199 98643199 G C ERCC6L2 Missense_Mutation p.G43A 0.27 tolerated_low_confidence(0.06) benign(0.201) TCGA-JW-A5VL-01 9 991578 991578 C T DMRT3 3'UTR 0.31 TCGA-JW-A5VL-01 9 99258569 99258569 C G CDC14B 3'Flank 0.34 TCGA-JW-A5VL-01 X 100880767 100880767 C G ARMCX3 Silent p.L266L 0.83 TCGA-JW-A5VL-01 X 100880829 100880829 C T ARMCX3 Missense_Mutation p.S287F 0.85 deleterious(0) benign(0.035) TCGA-JW-A5VL-01 X 100881358 100881358 C TG ARMCX3 3'UTR 0.37 TCGA-JW-A5VL-01 X 102005961 102005961 C G BHLHB9 3'UTR 0.68 TCGA-JW-A5VL-01 X 105855822 105855822 G T CXorf57 Missense_Mutation p.R171I 0.57 deleterious(0.04) benign(0.135) TCGA-JW-A5VL-01 X 11155727 11155727 C T ARHGAP6 3'UTR 0.50 TCGA-JW-A5VL-01 X 117731498 117731498 G A DOCK11 Missense_Mutation p.D790N 0.72 tolerated(0.18) benign(0.004) TCGA-JW-A5VL-01 X 118223212 118223212 C G KIAA1210 Missense_Mutation p.E661Q 0.68 tolerated(0.05) benign(0.014) TCGA-JW-A5VL-01 X 119389768 119389768 G C ZBTB33 3'UTR 0.67 TCGA-JW-A5VL-01 X 119394795 119394795 G A TMEM255A Missense_Mutation p.S327L 0.84 deleterious(0.04) unknown(0) TCGA-JW-A5VL-01 X 123095675 123095675 G C STAG2 Intron 0.80 TCGA-JW-A5VL-01 X 123513074 123513074 G C TENM1 3'UTR 0.80 TCGA-JW-A5VL-01 X 123630972 123630972 G C TENM1 Missense_Mutation p.P1197A 0.93 deleterious(0.04) probably_damaging(0.999) TCGA-JW-A5VL-01 X 128885728 128885728 C G XPNPEP2 Missense_Mutation p.F249L 0.77 tolerated(0.19) benign(0.338) TCGA-JW-A5VL-01 X 129055461 129055461 G C UTP14A Missense_Mutation p.E416Q 0.83 deleterious(0.01) possibly_damaging(0.673) TCGA-JW-A5VL-01 X 12905598 12905598 C G TLR7 Missense_Mutation p.I657M 0.52 deleterious(0.02) probably_damaging(1) TCGA-JW-A5VL-01 X 12905745 12905745 C G TLR7 Silent p.L706L 0.37 TCGA-JW-A5VL-01 X 129173217 129173217 G A BCORL1 Missense_Mutation p.M1526I 0.65 benign(0.196) TCGA-JW-A5VL-01 X 130411917 130411917 C T IGSF1 Missense_Mutation p.E750K 0.80 tolerated(0.15) benign(0.408) TCGA-JW-A5VL-01 X 132351736 132351736 G C TFDP3 Missense_Mutation p.I184M 0.75 deleterious(0) probably_damaging(0.973) TCGA-JW-A5VL-01 X 134125484 134125484 G C SMIM10 3'UTR 0.83 TCGA-JW-A5VL-01 X 134125570 134125570 G C SMIM10 3'UTR 0.83 TCGA-JW-A5VL-01 X 140994802 140994802 G C MAGEC1 Missense_Mutation p.E538Q 0.66 tolerated_low_confidence(0.06) benign(0.403) TCGA-JW-A5VL-01 X 1460630 1460630 C G IL3RA 5'UTR 0.43 TCGA-JW-A5VL-01 X 148072878 148072878 C G AFF2 3'UTR 0.68 TCGA-JW-A5VL-01 X 148627246 148627246 G A CXorf40A Missense_Mutation p.E24K 0.63 deleterious(0) probably_damaging(0.999) TCGA-JW-A5VL-01 X 152483218 152483218 G A MAGEA1 5'UTR 0.77 TCGA-JW-A5VL-01 X 152807332 152807332 C G ATP2B3 Silent p.L204L 0.61 TCGA-JW-A5VL-01 X 152847854 152847854 G A ATP2B3 3'UTR 0.67 TCGA-JW-A5VL-01 X 152958162 152958162 C G SLC6A8 Intron 0.86 TCGA-JW-A5VL-01 X 153225702 153225702 G A HCFC1 Silent p.L356L 0.78 TCGA-JW-A5VL-01 X 153225740 153225740 G A HCFC1 Missense_Mutation p.R344C 0.76 deleterious(0) probably_damaging(0.991) TCGA-JW-A5VL-01 X 153524261 153524261 G A TKTL1 Missense_Mutation p.D17N 0.75 deleterious(0.04) unknown(0) TCGA-JW-A5VL-01 X 153697543 153697543 G A PLXNA3 Missense_Mutation p.E1527K 0.72 tolerated(0.69) benign(0.119) TCGA-JW-A5VL-01 X 154159334 154159334 C G F8 Missense_Mutation p.D911H 0.64 deleterious(0.02) possibly_damaging(0.832) TCGA-JW-A5VL-01 X 155006058 155006058 C G SPRY3 3'UTR 0.50 TCGA-JW-A5VL-01 X 155006972 155006972 G A SPRY3 3'UTR 0.66 TCGA-JW-A5VL-01 X 155232553 155232553 C G IL9R Intron 0.68 TCGA-JW-A5VL-01 X 15555355 15555355 G A BMX Missense_Mutation p.D441N 0.40 tolerated(0.12) possibly_damaging(0.772) TCGA-JW-A5VL-01 X 16168521 16168521 G C GRPR Missense_Mutation p.M169I 0.53 tolerated(0.26) benign(0.346) TCGA-JW-A5VL-01 X 16887774 16887774 G C RBBP7 5'UTR 0.32 TCGA-JW-A5VL-01 X 17744156 17744156 C T NHS Nonsense_Mutation p.Q623* 0.37 TCGA-JW-A5VL-01 X 18660271 18660271 G C RS1 Missense_Mutation p.F176L 0.43 deleterious(0) probably_damaging(0.964) TCGA-JW-A5VL-01 X 19764468 19764468 G C SH3KBP1 Missense_Mutation p.S85C 0.37 tolerated(0.19) benign(0) TCGA-JW-A5VL-01 X 21627323 21627323 G C CNKSR2 Missense_Mutation p.K760N 0.38 tolerated(0.08) benign(0.141) TCGA-JW-A5VL-01 X 22115103 22115103 G A PHEX Missense_Mutation p.E294K 0.44 tolerated(0.77) possibly_damaging(0.838) TCGA-JW-A5VL-01 X 23722844 23722844 C G ACOT9 Missense_Mutation p.E409Q 0.23 tolerated(0.18) benign(0.138) TCGA-JW-A5VL-01 X 23851656 23851656 C G APOO 3'UTR 0.32 TCGA-JW-A5VL-01 X 24006133 24006133 C T KLHL15 Missense_Mutation p.E574K 0.41 tolerated(0.56) probably_damaging(0.931) TCGA-JW-A5VL-01 X 2408336 2408336 G A ZBED1 Missense_Mutation p.S142F 0.45 deleterious(0.01) probably_damaging(0.949) TCGA-JW-A5VL-01 X 26213404 26213404 C G MAGEB6 3'UTR 0.30 TCGA-JW-A5VL-01 X 2748123 2748123 C T GYG2 5'UTR 0.42 TCGA-JW-A5VL-01 X 27997787 27997787 C G DCAF8L1 Silent p.L555L 0.45 TCGA-JW-A5VL-01 X 31893427 31893427 G A DMD Missense_Mutation p.L2326F 0.29 benign(0) TCGA-JW-A5VL-01 X 3241581 3241581 C T MXRA5 Silent p.L715L 0.40 TCGA-JW-A5VL-01 X 36403130 36403130 T C CXorf30 3'UTR 0.50 TCGA-JW-A5VL-01 X 37431522 37431522 C T LANCL3 Silent p.L133L 0.27 TCGA-JW-A5VL-01 X 38016209 38016209 G A SRPX Silent p.L343L 0.24 TCGA-JW-A5VL-01 X 38663998 38663998 G C MID1IP1 5'UTR 0.75 TCGA-JW-A5VL-01 X 38664284 38664284 G A MID1IP1 Missense_Mutation p.D29N 0.44 deleterious(0.02) probably_damaging(0.948) TCGA-JW-A5VL-01 X 39937175 39937175 G C BCOR Nonsense_Mutation p.S3* 0.31 TCGA-JW-A5VL-01 X 40510669 40510669 C G MED14 3'UTR 0.37 TCGA-JW-A5VL-01 X 44703354 44703354 G C DUSP21 5'UTR 0.43 TCGA-JW-A5VL-01 X 47078213 47078213 G C CDK16 5'Flank 0.40 TCGA-JW-A5VL-01 X 47083145 47083145 C T CDK16 Silent p.L137L 0.31 TCGA-JW-A5VL-01 X 47842379 47842379 C T ZNF182 Missense_Mutation p.E87K 0.39 tolerated(0.42) benign(0.036) TCGA-JW-A5VL-01 X 47917923 47917923 G A ZNF630 Silent p.F636F 0.30 TCGA-JW-A5VL-01 X 48758478 48758478 G C PQBP1 Missense_Mutation p.E27Q 0.40 deleterious(0) probably_damaging(0.997) TCGA-JW-A5VL-01 X 48844596 48844596 C T GRIPAP1 Silent p.L295L 0.33 TCGA-JW-A5VL-01 X 48932470 48932470 C T WDR45 Missense_Mutation p.D360N 0.36 tolerated(0.07) benign(0.055) TCGA-JW-A5VL-01 X 49775347 49775347 C T CLCN5 Intron 0.23 TCGA-JW-A5VL-01 X 50213446 50213446 A G DGKK RNA 0.40 TCGA-JW-A5VL-01 X 50653862 50653862 G C BMP15 Missense_Mutation p.E27Q 0.42 tolerated(0.28) benign(0.005) TCGA-JW-A5VL-01 X 51488154 51488154 G A GSPT2 Missense_Mutation p.D478N 0.46 tolerated(0.07) possibly_damaging(0.683) TCGA-JW-A5VL-01 X 53113756 53113756 G C TSPYL2 Missense_Mutation p.L279F 0.32 tolerated(0.15) benign(0.286) TCGA-JW-A5VL-01 X 53579708 53579708 C T HUWE1 Missense_Mutation p.E2881K 0.47 benign(0.011) TCGA-JW-A5VL-01 X 53591561 53591561 C G HUWE1 Missense_Mutation p.E2335Q 0.44 benign(0.005) TCGA-JW-A5VL-01 X 54228426 54228426 C T WNK3 Missense_Mutation p.E1691K 0.65 deleterious(0) probably_damaging(0.998) TCGA-JW-A5VL-01 X 62885882 62885882 C G ARHGEF9 Missense_Mutation p.D314H 0.46 deleterious(0.02) possibly_damaging(0.692) TCGA-JW-A5VL-01 X 69625690 69625690 G C KIF4A Missense_Mutation p.E971Q 0.89 tolerated(0.18) benign(0.005) TCGA-JW-A5VL-01 X 70443861 70443861 G C GJB1 Missense_Mutation p.E102Q 0.70 deleterious(0.01) possibly_damaging(0.833) TCGA-JW-A5VL-01 X 70520933 70520933 G C NONO 3'UTR 0.78 TCGA-JW-A5VL-01 X 73047228 73047228 C G XIST RNA 0.62 TCGA-JW-A5VL-01 X 8761788 8761788 G C FAM9A Missense_Mutation p.Q281E 0.33 deleterious_low_confidence(0) unknown(0) TCGA-JW-A5VL-01 X 9693818 9693818 C G GPR143 Missense_Mutation p.D395H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.877) TCGA-JW-A5VL-01 X 99663151 99663151 G T PCDH19 Missense_Mutation p.P149T 0.77 deleterious(0) probably_damaging(1) TCGA-JW-A69B-01 10 68940115 68940115 C T CTNNA3 Missense_Mutation p.R336H 0.90 deleterious(0.02) possibly_damaging(0.812) TCGA-JW-A69B-01 10 70775886 70775886 C T KIAA1279 Missense_Mutation p.P527L 0.50 tolerated(0.07) possibly_damaging(0.818) TCGA-JW-A69B-01 11 2436530 2436530 G A TRPM5 Missense_Mutation p.R434W 0.53 deleterious(0) probably_damaging(0.927) TCGA-JW-A69B-01 11 75853592 75853592 G T UVRAG 3'UTR 0.19 TCGA-JW-A69B-01 12 133372557 133372557 C T GOLGA3 Missense_Mutation p.A784T 0.40 tolerated(0.12) benign(0.16) TCGA-JW-A69B-01 13 109831945 109831945 G T MYO16 Silent p.S1771S 0.29 TCGA-JW-A69B-01 14 29236510 29236510 G C FOXG1 Missense_Mutation p.E9Q 0.27 deleterious_low_confidence(0) unknown(0) TCGA-JW-A69B-01 15 73659973 73659973 G A HCN4 Silent p.F213F 0.45 TCGA-JW-A69B-01 15 91456130 91456130 C T MAN2A2 Silent p.P831P 0.21 TCGA-JW-A69B-01 16 77331190 77331190 C A ADAMTS18 Missense_Mutation p.A933S 0.19 tolerated(0.06) benign(0.041) TCGA-JW-A69B-01 16 88499894 88499894 G - ZNF469 Frame_Shift_Del p.V1979* 0.26 TCGA-JW-A69B-01 17 10353794 10353794 C T MYH4 Missense_Mutation p.R1386H 0.50 deleterious(0.01) probably_damaging(0.988) TCGA-JW-A69B-01 17 1538767 1538767 G A SCARF1 Missense_Mutation p.A593V 0.66 deleterious(0) probably_damaging(1) TCGA-JW-A69B-01 17 40466455 40466455 C T STAT3 3'UTR 0.54 TCGA-JW-A69B-01 17 45759980 45759980 C G KPNB1 3'UTR 0.55 TCGA-JW-A69B-01 17 45760790 45760790 C T KPNB1 3'UTR 0.48 TCGA-JW-A69B-01 19 1073273 1073273 C G HMHA1 Missense_Mutation p.L199V 0.39 tolerated(0.27) possibly_damaging(0.822) TCGA-JW-A69B-01 19 11943997 11943997 C T ZNF440 3'UTR 0.43 TCGA-JW-A69B-01 19 15575085 15575085 C T RASAL3 Missense_Mutation p.G29S 0.45 tolerated(0.37) benign(0.006) TCGA-JW-A69B-01 19 17323012 17323012 G A MYO9B 3'UTR 0.42 TCGA-JW-A69B-01 19 434715 434715 G T SHC2 Silent p.L368L 0.38 TCGA-JW-A69B-01 19 50832047 50832047 C T KCNC3 Missense_Mutation p.R98H 0.58 deleterious(0) probably_damaging(0.996) TCGA-JW-A69B-01 1 111217029 111217029 G A KCNA3 Missense_Mutation p.R135W 0.41 deleterious(0) probably_damaging(0.978) TCGA-JW-A69B-01 1 16342139 16342139 C T HSPB7 Missense_Mutation p.R150Q 0.33 tolerated(0.12) benign(0.067) TCGA-JW-A69B-01 1 16558560 16558560 C T RSG1 Missense_Mutation p.E254K 0.34 tolerated_low_confidence(0.11) benign(0.013) TCGA-JW-A69B-01 1 166959175 166959175 G A MAEL Intron 0.65 TCGA-JW-A69B-01 1 205498788 205498799 TGCTTACACGTC - CDK18 Intron 0.22 TCGA-JW-A69B-01 1 233152734 233152734 A G PCNXL2 Missense_Mutation p.I1591T 0.28 deleterious(0) possibly_damaging(0.616) TCGA-JW-A69B-01 1 237729972 237729972 C T RYR2 Missense_Mutation p.T1107M 0.35 benign(0.193) TCGA-JW-A69B-01 1 241680522 241680522 G A FH Missense_Mutation p.T76M 0.19 tolerated(0.05) benign(0.011) TCGA-JW-A69B-01 20 30467697 30467697 G A TTLL9 Intron 0.35 TCGA-JW-A69B-01 21 46888226 46888226 G A COL18A1 Silent p.T239T 0.52 TCGA-JW-A69B-01 22 22324757 22324757 C T TOP3B Missense_Mutation p.V136I 0.29 tolerated(0.4) benign(0.035) TCGA-JW-A69B-01 22 41621884 41621884 C T L3MBTL2 Silent p.S481S 0.45 TCGA-JW-A69B-01 2 116101413 116101413 G T DPP10 Nonsense_Mutation p.E70* 0.39 TCGA-JW-A69B-01 2 25384145 25384145 G A POMC Silent p.A203A 0.31 TCGA-JW-A69B-01 2 80816449 80816449 G A CTNNA2 Silent p.P676P 0.41 TCGA-JW-A69B-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.60 deleterious(0.04) probably_damaging(0.96) TCGA-JW-A69B-01 3 48697842 48697842 G A CELSR3 Silent p.V742V 0.29 TCGA-JW-A69B-01 3 56041308 56041308 G A ERC2 Silent p.A654A 0.33 TCGA-JW-A69B-01 4 140393933 140393933 G A RAB33B Missense_Mutation p.D115N 0.35 deleterious(0) probably_damaging(0.997) TCGA-JW-A69B-01 4 175598419 175598419 C T GLRA3 Missense_Mutation p.R246Q 0.40 tolerated(0.43) benign(0.078) TCGA-JW-A69B-01 4 177058704 177058704 G A WDR17 Missense_Mutation p.R458Q 0.47 tolerated(0.12) benign(0.004) TCGA-JW-A69B-01 4 177648970 177648970 G T VEGFC Missense_Mutation p.Q172K 0.29 tolerated(0.27) benign(0.036) TCGA-JW-A69B-01 4 206545 206545 T C ZNF876P RNA 0.62 TCGA-JW-A69B-01 4 42895397 42895397 G A GRXCR1 Silent p.P38P 0.54 TCGA-JW-A69B-01 5 178559250 178559250 G A ADAMTS2 Silent p.D757D 0.45 TCGA-JW-A69B-01 5 74011394 74011394 C T HEXB Missense_Mutation p.P321S 0.27 deleterious(0) possibly_damaging(0.804) TCGA-JW-A69B-01 6 124604274 124604274 C T NKAIN2 Missense_Mutation p.R60C 0.37 deleterious(0.01) probably_damaging(0.966) TCGA-JW-A69B-01 6 144508077 144508077 C T STX11 Missense_Mutation p.R105C 0.33 tolerated(0.14) benign(0.007) TCGA-JW-A69B-01 7 100959676 100959676 C T RABL5 Missense_Mutation p.M118I 0.74 tolerated(0.31) benign(0.002) TCGA-JW-A69B-01 7 128480702 128480702 G A FLNC Silent p.T550T 0.30 TCGA-JW-A69B-01 7 142965960 142965961 - A GSTK1 3'UTR 0.50 TCGA-JW-A69B-01 7 150417617 150417617 C T GIMAP1 Silent p.R175R 0.25 TCGA-JW-A69B-01 8 146202714 146202714 T A ZNF252P RNA 0.42 TCGA-JW-A69B-01 8 59484844 59484844 G T SDCBP Missense_Mutation p.A71S 0.39 tolerated(0.43) benign(0.003) TCGA-JW-A69B-01 8 67428482 67428482 C T C8orf46 3'UTR 0.42 TCGA-JW-A69B-01 8 79648739 79648739 G A IL7 Silent p.A128A 0.31 TCGA-JW-A69B-01 9 128064910 128064910 T G GAPVD1 Missense_Mutation p.H278Q 0.81 tolerated(0.26) benign(0.046) TCGA-JW-A69B-01 9 139994205 139994205 G A MAN1B1 Missense_Mutation p.G263E 0.39 deleterious(0) probably_damaging(0.999) TCGA-JW-A69B-01 X 102006437 102006437 G T BHLHB9 3'UTR 0.29 TCGA-JW-A69B-01 X 105450199 105450199 C T MUM1L1 Silent p.S258S 0.23 TCGA-JW-A69B-01 X 110489071 110489071 C T CAPN6 3'UTR 0.22 TCGA-JW-A69B-01 X 144910370 144910370 C A TMEM257 3'UTR 0.63 TCGA-JW-A69B-01 X 150891435 150891435 G T FATE1 3'UTR 0.92 TCGA-JW-A69B-01 X 152226470 152226470 C T PNMA3 Missense_Mutation p.A353V 0.65 tolerated(0.16) benign(0.02) TCGA-JW-A69B-01 X 50051745 50051745 G A CCNB3 Silent p.K192K 0.75 TCGA-JW-A69B-01 X 7811172 7811172 C T VCX 5'UTR 0.18 TCGA-JW-A69B-01 X 8433419 8433419 C T VCX3B 5'UTR 0.10 TCGA-JW-A852-01 10 102721735 102721735 G A FAM178A 3'Flank 0.43 TCGA-JW-A852-01 10 124266386 124266386 C T HTRA1 Silent p.T319T 0.20 TCGA-JW-A852-01 10 135176350 135176350 G A ECHS1 3'UTR 0.26 TCGA-JW-A852-01 10 27538702 27538702 T C RP11-85G18.6 Intron 0.42 TCGA-JW-A852-01 10 30316447 30316447 T C KIAA1462 Missense_Mutation p.E877G 0.18 tolerated(0.22) benign(0.004) TCGA-JW-A852-01 10 63957852 63957852 T C RTKN2 Missense_Mutation p.M549V 0.43 tolerated(0.25) benign(0.002) TCGA-JW-A852-01 11 1092219 1092219 C G MUC2 Silent p.L1346L 0.32 TCGA-JW-A852-01 11 118342900 118342900 A G KMT2A Silent p.K342K 0.41 TCGA-JW-A852-01 11 118376933 118376933 C T KMT2A Silent p.A3442A 0.33 TCGA-JW-A852-01 11 43941472 43941472 G A ALKBH3 Missense_Mutation p.R258Q 0.39 tolerated(0.15) benign(0.259) TCGA-JW-A852-01 11 498865 498865 G A RNH1 Missense_Mutation p.S228L 0.33 deleterious(0) possibly_damaging(0.816) TCGA-JW-A852-01 11 56086680 56086681 - A OR8K3 Frame_Shift_Ins p.L300Hfs*7 0.27 TCGA-JW-A852-01 11 57576858 57576858 T C CTNND1 Silent p.V785V 0.12 TCGA-JW-A852-01 11 58034737 58034737 A G OR10W1 Silent p.I198I 0.26 TCGA-JW-A852-01 11 59626606 59626606 C G TCN1 Missense_Mutation p.E231Q 0.44 tolerated(0.19) benign(0.249) TCGA-JW-A852-01 11 64108934 64108934 C T CCDC88B Silent p.L163L 0.58 TCGA-JW-A852-01 11 64645608 64645608 G A EHD1 Missense_Mutation p.P110L 0.26 deleterious(0) possibly_damaging(0.812) TCGA-JW-A852-01 11 64948463 64948463 C T AP003068.23 Missense_Mutation p.A179T 0.40 tolerated_low_confidence(0.2) possibly_damaging(0.682) TCGA-JW-A852-01 12 108013935 108013935 G A BTBD11 Silent p.A875A 0.44 TCGA-JW-A852-01 12 11083355 11083355 G C PRH2 Missense_Mutation p.Q65H 0.31 deleterious_low_confidence(0) benign(0.387) TCGA-JW-A852-01 12 49504417 49504417 C A LMBR1L 5'UTR 0.32 TCGA-JW-A852-01 12 970493 970493 C T WNK1 Silent p.P645P 0.14 TCGA-JW-A852-01 13 21751940 21751940 T C MRP63 3'UTR 0.23 TCGA-JW-A852-01 13 48942685 48942685 C T RB1 Nonsense_Mutation p.R358* 0.48 TCGA-JW-A852-01 13 84452532 84452532 G A SLITRK1 3'UTR 0.30 TCGA-JW-A852-01 14 56757094 56757094 G A PELI2 Missense_Mutation p.G206R 0.09 deleterious(0.01) possibly_damaging(0.668) TCGA-JW-A852-01 15 31295133 31295133 G A TRPM1 Missense_Mutation p.A1274V 0.45 tolerated(0.07) benign(0.019) TCGA-JW-A852-01 15 42058491 42058491 G C MGA Missense_Mutation p.Q2737H 0.41 deleterious(0.01) possibly_damaging(0.498) TCGA-JW-A852-01 15 77317846 77317846 G C PSTPIP1 Missense_Mutation p.E85D 0.48 tolerated(0.37) probably_damaging(0.982) TCGA-JW-A852-01 15 90164700 90164700 C A TICRR Silent p.I1077I 0.39 TCGA-JW-A852-01 16 4700414 4700414 C A MGRN1 Missense_Mutation p.T46N 0.42 deleterious(0) probably_damaging(0.97) TCGA-JW-A852-01 16 71509103 71509103 G T ZNF19 Silent p.L449L 0.33 TCGA-JW-A852-01 16 75142719 75142719 C T ZNRF1 3'UTR 0.37 TCGA-JW-A852-01 16 87376497 87376497 C A FBXO31 Missense_Mutation p.G240C 0.52 deleterious(0.02) probably_damaging(0.974) TCGA-JW-A852-01 16 88923573 88923573 C G TRAPPC2L Missense_Mutation p.I5M 0.14 deleterious(0) benign(0.044) TCGA-JW-A852-01 17 31322636 31322636 C A SPACA3 Missense_Mutation p.L82I 0.47 tolerated(0.13) benign(0.437) TCGA-JW-A852-01 17 32964651 32964651 C T TMEM132E Silent p.T785T 0.25 TCGA-JW-A852-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.50 deleterious(0) probably_damaging(0.994) TCGA-JW-A852-01 17 41158790 41158790 G A IFI35 5'UTR 0.36 TCGA-JW-A852-01 17 46262164 46262164 C T SKAP1 Missense_Mutation p.R163Q 0.46 tolerated(0.4) benign(0.021) TCGA-JW-A852-01 17 47128506 47128506 A T IGF2BP1 3'UTR 0.37 TCGA-JW-A852-01 17 5037191 5037191 G T USP6 Nonsense_Mutation p.E132* 0.28 TCGA-JW-A852-01 17 57741230 57741230 C G CLTC Missense_Mutation p.L466V 0.48 tolerated(0.18) probably_damaging(0.998) TCGA-JW-A852-01 17 58303537 58303537 G A USP32 Missense_Mutation p.S432L 0.55 tolerated(0.13) benign(0.243) TCGA-JW-A852-01 17 65132235 65132235 C G HELZ Missense_Mutation p.K1011N 0.36 deleterious(0.03) benign(0.126) TCGA-JW-A852-01 17 695084 695084 G T RNMTL1 Missense_Mutation p.W346C 0.33 deleterious(0) probably_damaging(1) TCGA-JW-A852-01 17 73927307 73927307 C T FBF1 Intron 0.57 TCGA-JW-A852-01 17 74394636 74394636 C T UBE2O Missense_Mutation p.G605S 0.39 deleterious(0) probably_damaging(0.999) TCGA-JW-A852-01 17 7757232 7757232 G A KDM6B 3'UTR 0.33 TCGA-JW-A852-01 17 80393586 80393586 G A HEXDC Missense_Mutation p.E157K 0.36 tolerated(0.16) benign(0.113) TCGA-JW-A852-01 17 80543821 80543821 C T FOXK2 Missense_Mutation p.R441W 0.39 tolerated(0.05) probably_damaging(0.967) TCGA-JW-A852-01 18 21046196 21046196 C T RIOK3 Missense_Mutation p.R215C 0.36 deleterious(0) possibly_damaging(0.836) TCGA-JW-A852-01 18 30846981 30846981 T C CCDC178 Silent p.A436A 0.37 TCGA-JW-A852-01 18 54694411 54694411 C T WDR7 Silent p.D1482D 0.17 TCGA-JW-A852-01 18 61171001 61171001 C T SERPINB5 3'UTR 0.16 TCGA-JW-A852-01 18 70461384 70461384 T C NETO1 Missense_Mutation p.K203E 0.18 tolerated(0.17) possibly_damaging(0.473) TCGA-JW-A852-01 19 10273368 10273368 G A DNMT1 Missense_Mutation p.S328F 0.35 deleterious(0.02) benign(0.009) TCGA-JW-A852-01 19 14167476 14167476 G C PALM3 Missense_Mutation p.F89L 0.33 tolerated(0.08) benign(0.163) TCGA-JW-A852-01 19 16317185 16317185 C T AP1M1 Missense_Mutation p.S78L 0.45 tolerated(0.39) benign(0.135) TCGA-JW-A852-01 19 19626788 19626788 G C NDUFA13 5'UTR 0.37 TCGA-JW-A852-01 19 23544220 23544220 C T ZNF91 Missense_Mutation p.E521K 0.46 tolerated(0.68) probably_damaging(0.998) TCGA-JW-A852-01 19 3822092 3822092 C T ZFR2 Missense_Mutation p.R493Q 0.23 deleterious(0) probably_damaging(0.931) TCGA-JW-A852-01 19 472413 472413 G C ODF3L2 Silent p.L72L 0.07 TCGA-JW-A852-01 19 49000803 49000803 C T LMTK3 Missense_Mutation p.E1204K 0.40 unknown(0) TCGA-JW-A852-01 19 51961226 51961226 A T SIGLEC8 Nonsense_Mutation p.L139* 0.34 TCGA-JW-A852-01 19 53612316 53612316 A G ZNF415 Missense_Mutation p.Y328H 0.41 deleterious(0.02) probably_damaging(0.99) TCGA-JW-A852-01 19 58983571 58983571 G T ZNF324 3'UTR 0.42 TCGA-JW-A852-01 19 59021339 59021339 C T SLC27A5 Missense_Mutation p.R311Q 0.41 tolerated(0.34) benign(0.069) TCGA-JW-A852-01 19 9043453 9043453 G T MUC16 Missense_Mutation p.H12026N 0.33 benign(0.003) TCGA-JW-A852-01 1 104115771 104115771 C T AMY2B Silent p.F134F 0.23 TCGA-JW-A852-01 1 113244070 113244070 C T RHOC 3'UTR 0.24 TCGA-JW-A852-01 1 151611373 151611373 G C SNX27 Silent p.V107V 0.58 TCGA-JW-A852-01 1 151611518 151611518 G A SNX27 Missense_Mutation p.D156N 0.67 deleterious(0) probably_damaging(0.999) TCGA-JW-A852-01 1 201966484 201966484 G C RNPEP Missense_Mutation p.G298R 0.28 tolerated(0.07) probably_damaging(1) TCGA-JW-A852-01 1 26286856 26286856 G A PAFAH2 3'UTR 0.53 TCGA-JW-A852-01 1 37947261 37947261 C T ZC3H12A Missense_Mutation p.R215C 0.11 deleterious(0) probably_damaging(1) TCGA-JW-A852-01 1 39913202 39913202 C T MACF1 Silent p.I4509I 0.18 TCGA-JW-A852-01 1 53558389 53558389 C T SLC1A7 Missense_Mutation p.G290S 0.08 tolerated(0.06) benign(0.32) TCGA-JW-A852-01 1 91182608 91182608 G C BARHL2 Missense_Mutation p.P49A 0.35 tolerated_low_confidence(1) possibly_damaging(0.527) TCGA-JW-A852-01 20 2845015 2845015 C T VPS16 Silent p.F575F 0.50 TCGA-JW-A852-01 20 52835609 52835609 C T PFDN4 Nonsense_Mutation p.Q109* 0.32 TCGA-JW-A852-01 21 34878376 34878376 C G GART Missense_Mutation p.E830Q 0.48 tolerated(0.26) benign(0.013) TCGA-JW-A852-01 21 47552113 47552113 G A COL6A2 Missense_Mutation p.E903K 0.42 tolerated(0.49) benign(0.129) TCGA-JW-A852-01 22 18020198 18020198 G A CECR2 Nonsense_Mutation p.W510* 0.47 TCGA-JW-A852-01 22 26423095 26423095 G A MYO18B Silent p.R2385R 0.14 TCGA-JW-A852-01 22 35789631 35789631 G A HMOX1 3'UTR 0.42 TCGA-JW-A852-01 22 36885888 36885888 C T FOXRED2 3'UTR 0.29 TCGA-JW-A852-01 22 36886250 36886250 C G FOXRED2 Silent p.L620L 0.46 TCGA-JW-A852-01 22 39219171 39219171 C T NPTXR Missense_Mutation p.G399R 0.33 deleterious(0) probably_damaging(1) TCGA-JW-A852-01 22 41565529 41565529 G A EP300 Missense_Mutation p.D1399N 0.57 probably_damaging(1) TCGA-JW-A852-01 2 116257125 116257125 T A DPP10 Missense_Mutation p.I108N 0.40 deleterious(0) possibly_damaging(0.546) TCGA-JW-A852-01 2 178098944 178098944 C T NFE2L2 Missense_Mutation p.R34Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-JW-A852-01 2 179594472 179594472 C T TTN Missense_Mutation p.V6170I 0.17 TCGA-JW-A852-01 2 234622208 234622208 T C UGT1A5 Missense_Mutation p.S191P 0.34 tolerated(1) benign(0.012) TCGA-JW-A852-01 2 3691678 3691678 C T COLEC11 Silent p.F276F 0.42 TCGA-JW-A852-01 2 61147541 61147541 G A REL Missense_Mutation p.D316N 0.41 tolerated_low_confidence(0.61) benign(0) TCGA-JW-A852-01 2 64819625 64819626 - T AFTPH 3'UTR 0.31 TCGA-JW-A852-01 2 71653849 71653849 C G ZNF638 Missense_Mutation p.A1617G 0.17 tolerated(0.43) benign(0.345) TCGA-JW-A852-01 2 98351725 98351725 C T ZAP70 Silent p.D365D 0.64 TCGA-JW-A852-01 3 10107104 10107104 C T FANCD2 Missense_Mutation p.P732L 0.39 deleterious(0) probably_damaging(0.969) TCGA-JW-A852-01 3 113866346 113866346 G T DRD3 Silent p.R148R 0.28 TCGA-JW-A852-01 3 133525541 133525541 T A SRPRB Missense_Mutation p.F81L 0.22 deleterious(0) probably_damaging(0.985) TCGA-JW-A852-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.56 deleterious(0.02) probably_damaging(0.959) TCGA-JW-A852-01 3 185641671 185641671 G A TRA2B Silent p.A145A 0.05 TCGA-JW-A852-01 4 111397808 111397808 G A ENPEP Missense_Mutation p.A80T 0.11 tolerated(0.15) benign(0.103) TCGA-JW-A852-01 4 153410533 153410533 A G FBXW7 Intron 0.49 TCGA-JW-A852-01 4 162376269 162376269 C T FSTL5 Silent p.L576L 0.47 TCGA-JW-A852-01 4 167656176 167656176 C T SPOCK3 Missense_Mutation p.D403N 0.42 deleterious_low_confidence(0.01) unknown(0) TCGA-JW-A852-01 4 187527264 187527264 G A FAT1 Missense_Mutation p.A3437V 0.10 benign(0.069) TCGA-JW-A852-01 4 62598964 62598964 G A LPHN3 Missense_Mutation p.R296Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-JW-A852-01 5 138723370 138723370 C T MZB1 3'UTR 0.36 TCGA-JW-A852-01 5 140166014 140166014 C T PCDHA1 Missense_Mutation p.R47C 0.38 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-JW-A852-01 5 140720771 140720771 G A PCDHGA2 Missense_Mutation p.G745R 0.31 deleterious_low_confidence(0.01) benign(0.334) TCGA-JW-A852-01 5 140797447 140797447 G A PCDHGB7 Silent p.Q7Q 0.38 TCGA-JW-A852-01 5 154181657 154181657 G C LARP1 Missense_Mutation p.E526Q 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-JW-A852-01 5 176002413 176002413 G A CDHR2 Missense_Mutation p.E252K 0.42 deleterious(0) probably_damaging(0.997) TCGA-JW-A852-01 5 71756680 71756680 C T ZNF366 Missense_Mutation p.R215Q 0.15 tolerated(0.16) benign(0.005) TCGA-JW-A852-01 5 825288 825288 C T ZDHHC11 Silent p.S338S 0.21 TCGA-JW-A852-01 6 112575244 112575244 C T LAMA4 Missense_Mutation p.E37K 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.601) TCGA-JW-A852-01 6 129762061 129762061 C G LAMA2 Silent p.L2062L 0.12 TCGA-JW-A852-01 6 74228875 74228875 C T EEF1A1 Missense_Mutation p.R134Q 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.518) TCGA-JW-A852-01 7 20778695 20778695 C T ABCB5 Missense_Mutation p.A986V 0.17 deleterious(0.03) possibly_damaging(0.556) TCGA-JW-A852-01 7 48545975 48545975 C T ABCA13 Silent p.N4445N 0.47 TCGA-JW-A852-01 7 53103693 53103693 G A POM121L12 Missense_Mutation p.R110Q 0.47 tolerated(0.21) benign(0) TCGA-JW-A852-01 7 73113736 73113736 C T STX1A 3'UTR 0.48 TCGA-JW-A852-01 7 99032527 99032527 C T ATP5J2-PTCD1 Silent p.R162R 0.13 TCGA-JW-A852-01 8 26441409 26441409 C T DPYSL2 Missense_Mutation p.R75C 0.53 tolerated(0.1) benign(0.143) TCGA-JW-A852-01 8 28047708 28047708 C T ELP3 3'UTR 0.23 TCGA-JW-A852-01 8 2967742 2967742 G A CSMD1 Silent p.H2182H 0.27 TCGA-JW-A852-01 9 125616293 125616293 C A RC3H2 Missense_Mutation p.D1019Y 0.27 tolerated_low_confidence(0.16) probably_damaging(0.996) TCGA-JW-A852-01 9 134465279 134465279 T C RAPGEF1 Missense_Mutation p.E786G 0.42 tolerated(0.09) probably_damaging(0.984) TCGA-JW-A852-01 9 140672487 140672487 C T EHMT1 Silent p.L724L 0.22 TCGA-JW-A852-01 X 102565529 102565529 G A BEX2 5'UTR 0.33 TCGA-JW-A852-01 X 123699264 123699264 C G TENM1 Missense_Mutation p.E742Q 0.33 tolerated(0.31) benign(0.27) TCGA-JW-A852-01 X 153132162 153132162 G T L1CAM Silent p.V791V 0.40 TCGA-JW-A852-01 X 34147997 34147997 T C FAM47A 3'UTR 0.35 TCGA-JW-A852-01 X 41043695 41043695 G A USP9X Missense_Mutation p.D1109N 0.35 tolerated(0.42) benign(0.075) TCGA-JW-A852-01 X 48935159 48935159 G C WDR45 Intron 0.30 TCGA-JW-A852-01 X 68061319 68061319 G A EFNB1 3'UTR 0.49 TCGA-JW-A852-01 X 70795632 70795633 - T OGT 3'UTR 0.19 TCGA-JW-A852-01 X 77381488 77381488 C T PGK1 3'UTR 0.36 TCGA-JW-A852-01 X 90691512 90691512 A T PABPC5 Silent p.T312T 0.07 TCGA-JW-AAVH-01 10 105352308 105352308 G A NEURL1 3'UTR 0.42 TCGA-JW-AAVH-01 10 105845606 105845606 T A COL17A1 5'UTR 0.42 TCGA-JW-AAVH-01 10 113911128 113911128 G C GPAM 3'UTR 0.38 TCGA-JW-AAVH-01 10 118353904 118353904 G A PNLIPRP1 Intron 0.54 TCGA-JW-AAVH-01 10 14965107 14965107 G A DCLRE1C Intron 0.24 TCGA-JW-AAVH-01 10 45939258 45939258 C T ALOX5 Silent p.A552A 0.45 TCGA-JW-AAVH-01 10 97194461 97194461 A G SORBS1 Silent p.P30P 0.48 TCGA-JW-AAVH-01 11 106558469 106558469 C T GUCY1A2 Missense_Mutation p.E700K 0.43 tolerated(0.35) benign(0.064) TCGA-JW-AAVH-01 11 35684980 35684981 AG - TRIM44 Frame_Shift_Del p.E108Gfs*10 0.23 TCGA-JW-AAVH-01 11 3657418 3657418 C T ART5 3'Flank 0.41 TCGA-JW-AAVH-01 11 60870056 60870056 G A CD5 Silent p.P8P 0.39 TCGA-JW-AAVH-01 11 67059166 67059166 G A ANKRD13D Missense_Mutation p.E164K 0.33 deleterious(0) probably_damaging(0.912) TCGA-JW-AAVH-01 11 6898369 6898369 T - OR10A4 Frame_Shift_Del p.F165Sfs*11 0.39 TCGA-JW-AAVH-01 11 85437097 85437097 C G SYTL2 Missense_Mutation p.V135L 0.33 deleterious_low_confidence(0.05) benign(0.024) TCGA-JW-AAVH-01 12 100200264 100200264 G A ANKS1B Missense_Mutation p.T196M 0.05 deleterious(0) probably_damaging(0.969) TCGA-JW-AAVH-01 12 124413854 124413854 C T DNAH10 Silent p.L3995L 0.37 TCGA-JW-AAVH-01 12 1895352 1895352 G A ADIPOR2 3'UTR 0.50 TCGA-JW-AAVH-01 12 57140580 57140580 C G PRIM1 Missense_Mutation p.D143H 0.45 deleterious(0.02) possibly_damaging(0.483) TCGA-JW-AAVH-01 12 57345934 57345934 C T RDH16 Missense_Mutation p.R278H 0.39 tolerated(0.06) benign(0.127) TCGA-JW-AAVH-01 12 65107313 65107313 G A GNS 3'UTR 0.58 TCGA-JW-AAVH-01 12 6710862 6710862 T C CHD4 Missense_Mutation p.E170G 0.63 deleterious(0.01) probably_damaging(0.913) TCGA-JW-AAVH-01 12 6956489 6956489 C T GNB3 3'UTR 0.53 TCGA-JW-AAVH-01 12 69650506 69650506 C T CPSF6 Missense_Mutation p.A135V 0.08 tolerated(0.06) unknown(0) TCGA-JW-AAVH-01 12 6972424 6972424 G C USP5 Missense_Mutation p.E613Q 0.59 tolerated(0.24) probably_damaging(0.948) TCGA-JW-AAVH-01 12 7044815 7044819 CGAAG - ATN1 Frame_Shift_Del p.R129Hfs*14 0.10 TCGA-JW-AAVH-01 13 88327936 88327936 C A SLITRK5 Missense_Mutation p.P98H 0.81 tolerated(0.33) possibly_damaging(0.827) TCGA-JW-AAVH-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.19 deleterious(0) probably_damaging(0.999) TCGA-JW-AAVH-01 14 19553471 19553471 G A POTEG Missense_Mutation p.G19S 0.17 deleterious_low_confidence(0) benign(0.184) TCGA-JW-AAVH-01 14 63269125 63269125 C T KCNH5 Missense_Mutation p.E582K 0.20 deleterious(0) probably_damaging(0.997) TCGA-JW-AAVH-01 14 63856332 63856332 G A PPP2R5E Nonsense_Mutation p.Q358* 0.39 TCGA-JW-AAVH-01 14 67291216 67291216 G A GPHN Missense_Mutation p.E76K 0.56 tolerated(0.31) benign(0.057) TCGA-JW-AAVH-01 14 72941383 72941383 G C RGS6 Missense_Mutation p.L223F 0.09 tolerated(0.29) benign(0.025) TCGA-JW-AAVH-01 14 86089474 86089474 C T FLRT2 Missense_Mutation p.S539F 0.41 tolerated(0.05) probably_damaging(0.947) TCGA-JW-AAVH-01 15 57924740 57924740 G A GCOM1 Missense_Mutation p.E263K 0.08 deleterious(0.01) possibly_damaging(0.864) TCGA-JW-AAVH-01 15 85407698 85407698 C T ALPK3 Missense_Mutation p.R1711W 0.13 deleterious(0) probably_damaging(1) TCGA-JW-AAVH-01 15 96876534 96876534 G C NR2F2 Intron 0.11 TCGA-JW-AAVH-01 16 2347463 2347463 C T ABCA3 Silent p.Q710Q 0.38 TCGA-JW-AAVH-01 16 28997739 28997739 G A LAT Silent p.T130T 0.43 TCGA-JW-AAVH-01 16 30505584 30505584 C T ITGAL Missense_Mutation p.S422L 0.38 tolerated(0.6) benign(0.001) TCGA-JW-AAVH-01 16 89347753 89347753 C T ANKRD11 Missense_Mutation p.A1733T 0.35 benign(0.002) TCGA-JW-AAVH-01 17 16593777 16593777 C T CCDC144A Silent p.Y21Y 0.43 TCGA-JW-AAVH-01 17 1684554 1684554 C T SMYD4 3'UTR 0.47 TCGA-JW-AAVH-01 17 17721640 17721640 G A SREBF1 Silent p.L403L 0.58 TCGA-JW-AAVH-01 17 20914586 20914586 G A USP22 Silent p.I327I 0.44 TCGA-JW-AAVH-01 17 35931905 35931905 C T SYNRG Missense_Mutation p.M361I 0.09 deleterious(0.01) possibly_damaging(0.871) TCGA-JW-AAVH-01 17 42152416 42152416 G A G6PC3 Missense_Mutation p.A166T 0.10 deleterious(0) probably_damaging(0.981) TCGA-JW-AAVH-01 17 46687889 46687889 C T HOXB7 Missense_Mutation p.R131Q 0.54 tolerated(0.07) possibly_damaging(0.862) TCGA-JW-AAVH-01 17 54554936 54554936 C G ANKFN1 Missense_Mutation p.Q624E 0.13 tolerated(0.12) benign(0.119) TCGA-JW-AAVH-01 17 61512529 61512529 T C CYB561 Missense_Mutation p.I161V 0.37 tolerated(1) benign(0.002) TCGA-JW-AAVH-01 17 7917236 7917236 C G GUCY2D Missense_Mutation p.R768G 0.54 deleterious(0) probably_damaging(1) TCGA-JW-AAVH-01 18 40695441 40695441 G C RIT2 Nonsense_Mutation p.S15* 0.46 TCGA-JW-AAVH-01 19 10741986 10741986 G A SLC44A2 Silent p.T122T 0.47 TCGA-JW-AAVH-01 19 12863506 12863506 C T BEST2 Nonsense_Mutation p.R34* 0.52 TCGA-JW-AAVH-01 19 14262057 14262057 C T LPHN1 Silent p.S1351S 0.50 TCGA-JW-AAVH-01 19 16024665 16024665 G A CYP4F11 Silent p.L484L 0.58 TCGA-JW-AAVH-01 19 24309379 24309379 A G ZNF254 Missense_Mutation p.M193V 0.41 tolerated(0.13) benign(0.003) TCGA-JW-AAVH-01 19 30106279 30106279 G A POP4 Missense_Mutation p.D219N 0.40 deleterious(0) probably_damaging(0.994) TCGA-JW-AAVH-01 19 31768111 31768111 G A TSHZ3 Missense_Mutation p.S863F 0.11 deleterious(0) possibly_damaging(0.504) TCGA-JW-AAVH-01 19 34922798 34922798 G A UBA2 Silent p.P85P 0.08 TCGA-JW-AAVH-01 19 36545171 36545171 C T THAP8 5'UTR 0.62 TCGA-JW-AAVH-01 19 51517987 51517987 G A KLK10 3'UTR 0.49 TCGA-JW-AAVH-01 19 52503608 52503608 C A ZNF615 Missense_Mutation p.A88S 0.53 tolerated(0.84) benign(0) TCGA-JW-AAVH-01 19 54876446 54876446 C T LAIR1 5'UTR 0.38 TCGA-JW-AAVH-01 1 117491915 117491915 G A PTGFRN Missense_Mutation p.E312K 0.12 deleterious(0.01) possibly_damaging(0.574) TCGA-JW-AAVH-01 1 120928394 120928394 C T FCGR1B Intron 0.11 TCGA-JW-AAVH-01 1 147096590 147096590 C T BCL9 Missense_Mutation p.H1371Y 0.33 deleterious(0) probably_damaging(0.968) TCGA-JW-AAVH-01 1 150483588 150483588 G A ECM1 Missense_Mutation p.E235K 0.32 tolerated(0.08) possibly_damaging(0.702) TCGA-JW-AAVH-01 1 150679244 150679244 C A HORMAD1 Missense_Mutation p.D197Y 0.17 deleterious(0) possibly_damaging(0.908) TCGA-JW-AAVH-01 1 150786575 150786575 G C ARNT Silent p.L697L 0.15 TCGA-JW-AAVH-01 1 153963252 153963252 A G RPS27 5'UTR 0.38 TCGA-JW-AAVH-01 1 17330869 17330869 C T ATP13A2 Missense_Mutation p.R172H 0.34 deleterious(0) probably_damaging(0.999) TCGA-JW-AAVH-01 1 177199000 177199000 G A BRINP2 5'UTR 0.59 TCGA-JW-AAVH-01 1 24469608 24469608 C G IL22RA1 5'UTR 0.16 TCGA-JW-AAVH-01 1 246829735 246829735 G T CNST 3'UTR 0.55 TCGA-JW-AAVH-01 1 25715555 25715555 G C RHCE Missense_Mutation p.S284W 0.07 deleterious(0) probably_damaging(0.978) TCGA-JW-AAVH-01 1 28905184 28905184 G A TRNAU1AP 3'Flank 0.46 TCGA-JW-AAVH-01 1 29189775 29189775 G A OPRD1 Missense_Mutation p.G367S 0.46 tolerated(0.44) benign(0.062) TCGA-JW-AAVH-01 1 8045152 8045152 G A PARK7 3'UTR 0.45 TCGA-JW-AAVH-01 20 33575943 33575943 C G MYH7B Missense_Mutation p.Q531E 0.37 possibly_damaging(0.898) TCGA-JW-AAVH-01 20 35675453 35675453 C G RBL1 Intron 0.53 TCGA-JW-AAVH-01 20 35929657 35929657 G A MANBAL 5'UTR 0.11 TCGA-JW-AAVH-01 20 35929721 35929721 G A MANBAL Missense_Mutation p.E19K 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-JW-AAVH-01 20 37101578 37101578 G T RALGAPB 5'UTR 0.41 TCGA-JW-AAVH-01 20 42680134 42680134 C G TOX2 Silent p.T200T 0.34 TCGA-JW-AAVH-01 20 60699786 60699786 G C LSM14B Missense_Mutation p.E81Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-JW-AAVH-01 21 15591997 15591997 G A RBM11 Silent p.L70L 0.31 TCGA-JW-AAVH-01 21 46000228 46000228 C T KRTAP10-5 Silent p.P76P 0.46 TCGA-JW-AAVH-01 22 32753966 32753966 C G RFPL3 5'UTR 0.58 TCGA-JW-AAVH-01 22 32764519 32764519 C G RFPL3S Missense_Mutation p.E22Q 0.11 possibly_damaging(0.617) TCGA-JW-AAVH-01 2 122489721 122489721 T G NIFK Silent p.I101I 0.52 TCGA-JW-AAVH-01 2 148693202 148693203 - T ORC4 Frame_Shift_Ins p.R397Efs*12 0.39 TCGA-JW-AAVH-01 2 158593777 158593777 C T ACVR1 3'UTR 0.45 TCGA-JW-AAVH-01 2 179560652 179560652 C G TTN Missense_Mutation p.E10383Q 0.47 TCGA-JW-AAVH-01 2 183731204 183731204 C T FRZB Missense_Mutation p.R26Q 0.46 tolerated(0.7) benign(0) TCGA-JW-AAVH-01 2 20817750 20817750 C T HS1BP3 3'UTR 0.14 TCGA-JW-AAVH-01 2 209204759 209204759 G A PIKFYVE Missense_Mutation p.G1612E 0.36 tolerated(0.16) benign(0.412) TCGA-JW-AAVH-01 2 220110680 220110680 C T STK16 5'UTR 0.12 TCGA-JW-AAVH-01 2 220114977 220114979 CTC TT TUBA4A 3'UTR 0.18 TCGA-JW-AAVH-01 2 220115268 220115268 C T TUBA4A Missense_Mutation p.A385T 0.07 tolerated_low_confidence(0.05) benign(0.107) TCGA-JW-AAVH-01 2 224840538 224840538 C T SERPINE2 3'UTR 0.44 TCGA-JW-AAVH-01 2 228771051 228771051 C G DAW1 Missense_Mutation p.C285W 0.32 deleterious(0) probably_damaging(0.991) TCGA-JW-AAVH-01 2 46819700 46819700 T C PIGF Missense_Mutation p.S154G 0.28 tolerated(0.21) benign(0.055) TCGA-JW-AAVH-01 2 5833319 5833319 G A SOX11 Missense_Mutation p.G156S 0.29 tolerated(0.43) benign(0.002) TCGA-JW-AAVH-01 2 69702644 69702644 C T AAK1 3'UTR 0.13 TCGA-JW-AAVH-01 2 74687101 74687101 G C WBP1 Missense_Mutation p.E92Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-JW-AAVH-01 2 85779620 85779620 C T GGCX Missense_Mutation p.R453H 0.43 tolerated(0.21) benign(0.003) TCGA-JW-AAVH-01 2 98431659 98431659 C T TMEM131 Intron 0.37 TCGA-JW-AAVH-01 3 123634519 123634519 C A CCDC14 Missense_Mutation p.D616Y 0.37 deleterious(0) probably_damaging(0.979) TCGA-JW-AAVH-01 3 123798885 123798885 G T KALRN Missense_Mutation p.C6F 0.59 deleterious_low_confidence(0) unknown(0) TCGA-JW-AAVH-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.10 deleterious(0.02) probably_damaging(0.959) TCGA-JW-AAVH-01 3 183028798 183028798 C T MCF2L2 Missense_Mutation p.E300K 0.38 deleterious(0) probably_damaging(0.928) TCGA-JW-AAVH-01 3 197799657 197799657 C T RNU6-821P 5'Flank 0.67 TCGA-JW-AAVH-01 3 63466558 63466558 G A SYNPR Silent p.L45L 0.28 TCGA-JW-AAVH-01 3 85008787 85008787 G A CADM2 Missense_Mutation p.R10H 0.36 tolerated(0.58) benign(0.27) TCGA-JW-AAVH-01 4 1016235 1016235 G C FGFRL1 Silent p.L108L 0.13 TCGA-JW-AAVH-01 4 115544606 115544606 G A UGT8 Silent p.L190L 0.09 TCGA-JW-AAVH-01 4 119951466 119951466 C G SYNPO2 Missense_Mutation p.D512E 0.87 tolerated(0.21) benign(0.001) TCGA-JW-AAVH-01 4 147561952 147561952 G A POU4F2 Missense_Mutation p.G408S 0.11 tolerated_low_confidence(0.12) benign(0.151) TCGA-JW-AAVH-01 4 149357181 149357181 G C NR3C2 Missense_Mutation p.H278D 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.507) TCGA-JW-AAVH-01 4 153244185 153244185 G A FBXW7 Nonsense_Mutation p.R658* 0.94 TCGA-JW-AAVH-01 4 3769027 3769027 C T ADRA2C Missense_Mutation p.R232C 0.38 deleterious(0) probably_damaging(1) TCGA-JW-AAVH-01 4 89648695 89648695 T A FAM13A 3'UTR 0.14 TCGA-JW-AAVH-01 5 156957843 156957843 C T ADAM19 Missense_Mutation p.V127I 0.16 deleterious(0) probably_damaging(0.943) TCGA-JW-AAVH-01 5 171406 171406 C A PLEKHG4B Nonsense_Mutation p.Y943* 0.24 TCGA-JW-AAVH-01 5 57750074 57750074 G - PLK2 3'UTR 0.45 TCGA-JW-AAVH-01 5 89985845 89985845 G A GPR98 Missense_Mutation p.E2220K 0.15 benign(0.002) TCGA-JW-AAVH-01 6 100838868 100838868 C A SIM1 Missense_Mutation p.S557I 0.50 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-JW-AAVH-01 6 144779974 144779974 C T UTRN Nonsense_Mutation p.Q785* 0.59 TCGA-JW-AAVH-01 6 24709066 24709066 C A C6orf62 Missense_Mutation p.G168V 0.38 deleterious(0) possibly_damaging(0.563) TCGA-JW-AAVH-01 6 26234835 26234835 G A HIST1H1D Silent p.N109N 0.37 TCGA-JW-AAVH-01 6 30633264 30633264 G A DHX16 Nonsense_Mutation p.R305* 0.42 TCGA-JW-AAVH-01 6 32977320 32977320 C G HLA-DOA 5'UTR 0.45 TCGA-JW-AAVH-01 6 46656120 46656120 C T TDRD6 Silent p.R85R 0.38 TCGA-JW-AAVH-01 6 56334965 56334965 T A DST Silent p.A4856A 0.46 TCGA-JW-AAVH-01 7 102915987 102915987 C T DPY19L2P2 RNA 0.44 TCGA-JW-AAVH-01 7 106513165 106513165 G C PIK3CG Missense_Mutation p.R690T 0.07 deleterious(0) probably_damaging(0.966) TCGA-JW-AAVH-01 7 154379365 154379365 G A DPP6 Intron 0.41 TCGA-JW-AAVH-01 7 158677286 158677286 C T WDR60 Missense_Mutation p.S304L 0.53 tolerated(0.4) benign(0.004) TCGA-JW-AAVH-01 7 44144457 44144457 C T AEBP1 Missense_Mutation p.R65W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-JW-AAVH-01 7 50459521 50459521 C G IKZF1 Missense_Mutation p.N228K 0.42 deleterious(0.02) possibly_damaging(0.892) TCGA-JW-AAVH-01 7 6193966 6193966 C T USP42 Silent p.A927A 0.33 TCGA-JW-AAVH-01 8 105510017 105510017 C T LRP12 Missense_Mutation p.D255N 0.35 tolerated(0.3) benign(0.033) TCGA-JW-AAVH-01 8 117870646 117870646 C G RAD21 Missense_Mutation p.E142D 0.53 tolerated(0.15) benign(0.086) TCGA-JW-AAVH-01 8 142222451 142222451 A G SLC45A4 Missense_Mutation p.Y665H 0.37 deleterious(0) probably_damaging(1) TCGA-JW-AAVH-01 8 62465661 62465661 C T ASPH Missense_Mutation p.D519N 0.40 deleterious(0.01) benign(0.197) TCGA-JW-AAVH-01 8 8749339 8749339 G A MFHAS1 Silent p.L410L 0.62 TCGA-JW-AAVH-01 9 125486343 125486343 G A OR1L4 Silent p.Q25Q 0.10 TCGA-JW-AAVH-01 9 13108983 13108983 G A MPDZ Silent p.G1977G 0.52 TCGA-JW-AAVH-01 9 132631236 132631236 C T USP20 Missense_Mutation p.R411C 0.52 deleterious(0) probably_damaging(0.973) TCGA-JW-AAVH-01 9 136412194 136412194 C T ADAMTSL2 Silent p.N266N 0.09 TCGA-JW-AAVH-01 9 139909991 139909991 C T ABCA2 Missense_Mutation p.R1191H 0.54 deleterious(0) probably_damaging(0.992) TCGA-JW-AAVH-01 9 140374787 140374787 C T PNPLA7 Missense_Mutation p.D853N 0.47 deleterious(0.03) possibly_damaging(0.465) TCGA-JW-AAVH-01 9 2645582 2645582 C T VLDLR Missense_Mutation p.P441S 0.10 deleterious(0.01) probably_damaging(0.915) TCGA-JW-AAVH-01 9 3270490 3270490 G A RFX3 Missense_Mutation p.A413V 0.14 tolerated(0.14) benign(0.002) TCGA-JW-AAVH-01 9 5921472 5921472 A G KIAA2026 Silent p.F1508F 0.55 TCGA-JW-AAVH-01 9 77407601 77407601 G A TRPM6 Missense_Mutation p.P826L 0.12 deleterious(0.03) benign(0.081) TCGA-JW-AAVH-01 9 8521487 8521487 C T PTPRD Missense_Mutation p.G251R 0.50 tolerated(0.28) probably_damaging(1) TCGA-JW-AAVH-01 X 10166050 10166050 C T CLCN4 Silent p.V168V 0.29 TCGA-JW-AAVH-01 X 123779128 123779128 G A TENM1 Missense_Mutation p.R581W 0.65 tolerated(0.06) possibly_damaging(0.786) TCGA-JW-AAVH-01 X 137793201 137793201 C - FGF13 Intron 0.37 TCGA-JW-AAVH-01 X 142722893 142722893 C T SLITRK4 5'Flank 0.48 TCGA-JW-AAVH-01 X 26212024 26212024 C T MAGEB6 Nonsense_Mutation p.Q21* 0.31 TCGA-JW-AAVH-01 X 31792149 31792149 A T DMD Missense_Mutation p.D2490E 0.38 possibly_damaging(0.621) TCGA-JW-AAVH-01 X 37027257 37027257 C A FAM47C Silent p.L258L 0.27 TCGA-JW-AAVH-01 X 37027495 37027495 C G FAM47C Missense_Mutation p.L338V 0.35 tolerated(0.5) benign(0.005) TCGA-JW-AAVH-01 X 38079970 38079970 G C SRPX Missense_Mutation p.P26A 0.06 tolerated(0.76) benign(0.015) TCGA-JW-AAVH-01 X 39933467 39933467 T C BCOR Missense_Mutation p.T378A 0.33 tolerated(0.18) benign(0.012) TCGA-JW-AAVH-01 X 76763072 76763072 G A ATRX 3'UTR 0.07 TCGA-JW-AAVH-01 X 78216100 78216100 C T P2RY10 Missense_Mutation p.T28I 0.28 tolerated(0.3) benign(0.002) TCGA-JX-A3PZ-01 10 129904916 129904916 C T MKI67 Missense_Mutation p.E1730K 0.34 tolerated(0.52) benign(0.443) TCGA-JX-A3PZ-01 11 103153800 103153800 G A DYNC2H1 Missense_Mutation p.V3633M 0.66 benign(0.388) TCGA-JX-A3PZ-01 11 2609969 2609969 C G KCNQ1 Missense_Mutation p.D426E 0.22 tolerated(0.52) benign(0.005) TCGA-JX-A3PZ-01 11 70265913 70265913 C T CTTN Silent p.A210A 0.41 TCGA-JX-A3PZ-01 11 76751777 76751777 C T B3GNT6 3'UTR 0.50 TCGA-JX-A3PZ-01 12 10342532 10342532 C A TMEM52B Silent p.I95I 0.65 TCGA-JX-A3PZ-01 12 110957694 110957694 C T RAD9B Missense_Mutation p.S288L 0.33 tolerated(0.09) benign(0.027) TCGA-JX-A3PZ-01 12 121094061 121094061 G A CABP1 Intron 0.27 TCGA-JX-A3PZ-01 12 18238556 18238556 G A RERGL Nonsense_Mutation p.Q62* 0.63 TCGA-JX-A3PZ-01 12 40645343 40645343 G T LRRK2 Missense_Mutation p.G393V 0.28 tolerated(0.06) benign(0.221) TCGA-JX-A3PZ-01 12 44693454 44693454 A G TMEM117 Missense_Mutation p.S234G 0.22 deleterious(0.01) possibly_damaging(0.588) TCGA-JX-A3PZ-01 12 49742618 49742618 G A DNAJC22 5'UTR 0.47 TCGA-JX-A3PZ-01 13 84454243 84454243 A G SLITRK1 Missense_Mutation p.F467S 0.18 deleterious(0) probably_damaging(0.998) TCGA-JX-A3PZ-01 14 56103991 56103991 C G KTN1 Nonsense_Mutation p.S542* 0.34 TCGA-JX-A3PZ-01 15 25958932 25958932 C T ATP10A Missense_Mutation p.V745I 0.18 tolerated(0.55) benign(0.002) TCGA-JX-A3PZ-01 15 48888524 48888524 C T FBN1 Missense_Mutation p.R165Q 0.32 probably_damaging(0.978) TCGA-JX-A3PZ-01 15 68624760 68624760 C G ITGA11 Silent p.V494V 0.29 TCGA-JX-A3PZ-01 15 75557739 75557739 G A GOLGA6C Missense_Mutation p.E245K 0.30 deleterious(0.03) benign(0.235) TCGA-JX-A3PZ-01 16 19584549 19584549 G A C16orf62 Missense_Mutation p.E221K 0.34 deleterious(0) possibly_damaging(0.632) TCGA-JX-A3PZ-01 16 27079690 27079690 C G C16orf82 RNA 0.20 TCGA-JX-A3PZ-01 16 3452170 3452170 G C ZNF174 Missense_Mutation p.E56Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-JX-A3PZ-01 16 68025834 68025834 C T DPEP2 Missense_Mutation p.G190D 0.36 deleterious(0) probably_damaging(0.999) TCGA-JX-A3PZ-01 17 1964523 1964523 C T SMG6 3'UTR 0.32 TCGA-JX-A3PZ-01 17 56499362 56499362 G A HSF5 3'UTR 0.33 TCGA-JX-A3PZ-01 17 64210592 64210592 C T APOH Missense_Mutation p.E321K 0.34 tolerated(0.14) benign(0.102) TCGA-JX-A3PZ-01 18 13100368 13100368 C G CEP192 Missense_Mutation p.S2243C 0.37 tolerated(0.12) probably_damaging(0.971) TCGA-JX-A3PZ-01 18 61322841 61322841 G T SERPINB3 3'UTR 0.17 TCGA-JX-A3PZ-01 19 1050958 1050958 C G ABCA7 Missense_Mutation p.S864C 0.56 deleterious(0) probably_damaging(0.992) TCGA-JX-A3PZ-01 19 19338587 19338587 G C NCAN Missense_Mutation p.E720Q 0.71 deleterious(0.04) probably_damaging(0.994) TCGA-JX-A3PZ-01 19 51584836 51584836 G A KLK14 Silent p.A71A 0.36 TCGA-JX-A3PZ-01 19 56463942 56463942 G T NLRP8 Nonsense_Mutation p.G136* 0.34 TCGA-JX-A3PZ-01 1 10532464 10532464 G T DFFA Missense_Mutation p.L18I 0.40 deleterious(0.01) possibly_damaging(0.869) TCGA-JX-A3PZ-01 1 178411962 178411962 G T RASAL2 Missense_Mutation p.W360C 0.49 deleterious(0) probably_damaging(0.999) TCGA-JX-A3PZ-01 1 196977674 196977674 G A CFHR5 Missense_Mutation p.R524K 0.50 tolerated(1) benign(0) TCGA-JX-A3PZ-01 1 205039053 205039053 C A CNTN2 Silent p.G765G 0.11 TCGA-JX-A3PZ-01 1 205779628 205779628 C G SLC41A1 5'UTR 0.37 TCGA-JX-A3PZ-01 1 22170683 22170683 G A HSPG2 Silent p.V2858V 0.40 TCGA-JX-A3PZ-01 1 236734921 236734921 C T HEATR1 Missense_Mutation p.C1258Y 0.24 deleterious(0) probably_damaging(0.947) TCGA-JX-A3PZ-01 1 62907935 62907935 G A USP1 Missense_Mutation p.E121K 0.42 tolerated(0.26) possibly_damaging(0.635) TCGA-JX-A3PZ-01 20 2635525 2635525 G A NOP56 Missense_Mutation p.M167I 0.49 deleterious(0.01) possibly_damaging(0.733) TCGA-JX-A3PZ-01 20 2845875 2845875 C T VPS16 Silent p.L696L 0.41 TCGA-JX-A3PZ-01 20 33147555 33147555 G C MAP1LC3A Silent p.L77L 0.27 TCGA-JX-A3PZ-01 20 34242510 34242510 C T RBM12 Silent p.P245P 0.35 TCGA-JX-A3PZ-01 20 35173466 35173466 C T MYL9 Missense_Mutation p.S60L 0.54 deleterious(0) benign(0.092) TCGA-JX-A3PZ-01 20 9561269 9561269 G A PAK7 Silent p.H171H 0.38 TCGA-JX-A3PZ-01 21 43444484 43444484 C T ZNF295-AS1 RNA 0.49 TCGA-JX-A3PZ-01 21 43867408 43867408 G A UBASH3A 3'UTR 0.10 TCGA-JX-A3PZ-01 22 23634823 23634823 G T BCR Nonsense_Mutation p.E960* 0.31 TCGA-JX-A3PZ-01 22 24964112 24964112 G T SNRPD3 Missense_Mutation p.G96V 0.50 tolerated(0.08) benign(0.072) TCGA-JX-A3PZ-01 22 37171930 37171930 G A IFT27 5'UTR 0.60 TCGA-JX-A3PZ-01 22 38041472 38041472 C T SH3BP1 Silent p.I293I 0.52 TCGA-JX-A3PZ-01 22 39477172 39477172 C T APOBEC3G Missense_Mutation p.R136C 0.43 tolerated(0.15) probably_damaging(0.982) TCGA-JX-A3PZ-01 2 101892893 101892893 G A RNF149 3'UTR 0.26 TCGA-JX-A3PZ-01 2 107049624 107049624 C G RGPD3 Missense_Mutation p.E775Q 0.19 tolerated(0.11) probably_damaging(0.966) TCGA-JX-A3PZ-01 2 108479255 108479255 G C RGPD4 Missense_Mutation p.E775Q 0.36 tolerated(0.1) possibly_damaging(0.727) TCGA-JX-A3PZ-01 2 204305279 204305279 C A RAPH1 Missense_Mutation p.M878I 0.75 benign(0) TCGA-JX-A3PZ-01 3 15113596 15113596 T C ZFYVE20 3'UTR 0.11 TCGA-JX-A3PZ-01 3 65415520 65415520 C T MAGI1 Silent p.A614A 0.09 TCGA-JX-A3PZ-01 3 89531135 89531135 T C EPHA3 3'UTR 0.24 TCGA-JX-A3PZ-01 3 9802348 9802348 G C CAMK1 Missense_Mutation p.S246C 0.42 deleterious(0) probably_damaging(1) TCGA-JX-A3PZ-01 4 148555364 148555364 G T TMEM184C Missense_Mutation p.D366Y 0.27 deleterious(0.03) possibly_damaging(0.541) TCGA-JX-A3PZ-01 4 25665907 25665907 G A SLC34A2 Missense_Mutation p.V112M 0.35 deleterious(0) probably_damaging(0.964) TCGA-JX-A3PZ-01 5 176562700 176562700 C T NSD1 Missense_Mutation p.S199L 0.36 tolerated_low_confidence(0.12) benign(0.261) TCGA-JX-A3PZ-01 5 72209727 72209727 A C TNPO1 3'UTR 0.39 TCGA-JX-A3PZ-01 6 105577278 105577278 C T BVES Silent p.S109S 0.41 TCGA-JX-A3PZ-01 6 2779557 2779557 C T WRNIP1 Silent p.D439D 0.16 TCGA-JX-A3PZ-01 6 30671436 30671436 C T MDC1 Missense_Mutation p.E1842K 0.17 deleterious(0.05) probably_damaging(0.98) TCGA-JX-A3PZ-01 6 44102397 44102397 G T TMEM63B Missense_Mutation p.A26S 0.16 tolerated(1) possibly_damaging(0.7) TCGA-JX-A3PZ-01 7 29552182 29552182 T G CHN2 Missense_Mutation p.V413G 0.64 deleterious(0) possibly_damaging(0.908) TCGA-JX-A3PZ-01 7 29553555 29553555 C G CHN2 3'UTR 0.32 TCGA-JX-A3PZ-01 8 103839027 103839027 G C AZIN1 3'UTR 0.35 TCGA-JX-A3PZ-01 8 139143684 139143684 C G FAM135B 3'UTR 0.38 TCGA-JX-A3PZ-01 8 8185835 8185835 C T SGK223 Silent p.V819V 0.37 TCGA-JX-A3PZ-01 8 88249229 88249229 A G CNBD1 Silent p.G220G 0.41 TCGA-JX-A3PZ-01 9 129646494 129646494 C A ZBTB34 3'UTR 0.40 TCGA-JX-A3PZ-01 9 33467427 33467427 C T NOL6 Missense_Mutation p.V564I 0.39 tolerated(0.36) benign(0.006) TCGA-JX-A3PZ-01 9 33935634 33935634 G C UBAP2 Intron 0.50 TCGA-JX-A3PZ-01 9 8317270 8317270 C A PTPRD 3'UTR 0.47 TCGA-JX-A3PZ-01 X 55650327 55650327 G A FOXR2 Silent p.Q61Q 0.35 TCGA-JX-A3PZ-01 X 66937348 66937348 G C AR Missense_Mutation p.Q734H 0.40 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 10 103586855 103586855 C G KCNIP2 3'Flank 0.19 TCGA-JX-A3Q0-01 10 104435771 104435772 CA - ARL3 3'UTR 0.36 TCGA-JX-A3Q0-01 10 105139503 105139503 G T TAF5 Missense_Mutation p.D418Y 0.30 deleterious(0) probably_damaging(0.99) TCGA-JX-A3Q0-01 10 105793763 105793763 C G COL17A1 Missense_Mutation p.D1366H 0.25 unknown(0) TCGA-JX-A3Q0-01 10 111967748 111967748 C T MXI1 Missense_Mutation p.S61L 0.34 deleterious_low_confidence(0.01) benign(0.36) TCGA-JX-A3Q0-01 10 11505563 11505563 G A USP6NL Missense_Mutation p.S472L 0.36 tolerated(0.29) benign(0.008) TCGA-JX-A3Q0-01 10 116698257 116698257 C T TRUB1 Missense_Mutation p.S82L 0.37 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 10 117059712 117059712 C T ATRNL1 Missense_Mutation p.P862S 0.42 tolerated(0.68) possibly_damaging(0.637) TCGA-JX-A3Q0-01 10 118434180 118434180 G A HSPA12A 3'UTR 0.47 TCGA-JX-A3Q0-01 10 118434523 118434523 G T HSPA12A Silent p.V599V 0.36 TCGA-JX-A3Q0-01 10 118434551 118434551 G A HSPA12A Missense_Mutation p.P590L 0.32 tolerated(0.06) probably_damaging(0.933) TCGA-JX-A3Q0-01 10 123969978 123969978 T C TACC2 Missense_Mutation p.F2013S 0.36 benign(0.411) TCGA-JX-A3Q0-01 10 126673446 126673446 G A ZRANB1 Missense_Mutation p.R671Q 0.36 tolerated(0.34) possibly_damaging(0.758) TCGA-JX-A3Q0-01 10 127344501 127344501 C T TEX36 Missense_Mutation p.D177N 0.25 tolerated_low_confidence(0.25) benign(0.016) TCGA-JX-A3Q0-01 10 27009280 27009280 G A PDSS1 Missense_Mutation p.E201K 0.13 deleterious(0.02) probably_damaging(0.93) TCGA-JX-A3Q0-01 10 27539146 27539146 G A RP11-85G18.6 RNA 0.34 TCGA-JX-A3Q0-01 10 28233243 28233243 G C ARMC4 Missense_Mutation p.L551V 0.43 tolerated(0.06) possibly_damaging(0.725) TCGA-JX-A3Q0-01 10 28408627 28408627 C T MPP7 Missense_Mutation p.R302Q 0.80 tolerated(0.15) benign(0.003) TCGA-JX-A3Q0-01 10 30315291 30315291 C T KIAA1462 Missense_Mutation p.M1262I 0.25 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 10 30316406 30316406 C T KIAA1462 Missense_Mutation p.E891K 0.24 tolerated(0.38) benign(0.046) TCGA-JX-A3Q0-01 10 30316418 30316418 C T KIAA1462 Missense_Mutation p.E887K 0.24 tolerated(0.26) benign(0.054) TCGA-JX-A3Q0-01 10 3190278 3190278 G C PITRM1 Intron 0.13 TCGA-JX-A3Q0-01 10 35859061 35859061 C T CCNY 3'UTR 0.28 TCGA-JX-A3Q0-01 10 45602409 45602409 C T RSU1P2 RNA 0.40 TCGA-JX-A3Q0-01 10 49998860 49998860 G A WDFY4 Silent p.A1385A 0.25 TCGA-JX-A3Q0-01 10 51585289 51585289 C T NCOA4 Missense_Mutation p.P479L 0.29 deleterious(0.02) benign(0.06) TCGA-JX-A3Q0-01 10 55782738 55782738 C T PCDH15 Missense_Mutation p.D814N 0.09 deleterious(0.02) probably_damaging(1) TCGA-JX-A3Q0-01 10 5963319 5963319 G A FBXO18 Silent p.Q784Q 0.28 TCGA-JX-A3Q0-01 10 69970178 69970178 C G MYPN Missense_Mutation p.S1310C 0.42 tolerated(0.08) possibly_damaging(0.572) TCGA-JX-A3Q0-01 10 70945777 70945777 G A SUPV3L1 Silent p.K102K 0.32 TCGA-JX-A3Q0-01 10 71168822 71168822 G A TACR2 Silent p.L199L 0.17 TCGA-JX-A3Q0-01 10 71582155 71582155 G A COL13A1 Missense_Mutation p.E109K 0.45 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-JX-A3Q0-01 10 75545726 75545726 C T ZSWIM8 Silent p.F30F 0.12 TCGA-JX-A3Q0-01 10 75545731 75545731 C T ZSWIM8 Missense_Mutation p.S32F 0.12 deleterious(0) probably_damaging(0.992) TCGA-JX-A3Q0-01 10 77795880 77795880 C T C10orf11 Silent p.L54L 0.29 TCGA-JX-A3Q0-01 10 87898609 87898609 G A GRID1 Silent p.L231L 0.28 TCGA-JX-A3Q0-01 10 90562694 90562694 G A LIPM Missense_Mutation p.R14K 0.26 tolerated(0.1) possibly_damaging(0.632) TCGA-JX-A3Q0-01 10 94070946 94070946 G A MARCH5 Silent p.V30V 0.38 TCGA-JX-A3Q0-01 10 94368777 94368777 G C KIF11 Missense_Mutation p.D130H 0.34 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 10 96443712 96443712 G A CYP2C18 Missense_Mutation p.D46N 0.30 tolerated(0.47) benign(0.103) TCGA-JX-A3Q0-01 10 97922159 97922159 G T ZNF518A RNA 0.31 TCGA-JX-A3Q0-01 11 102738047 102738047 C G MMP12 RNA 0.36 TCGA-JX-A3Q0-01 11 107968424 107968424 C T CUL5 Missense_Mutation p.S656L 0.36 deleterious(0) possibly_damaging(0.87) TCGA-JX-A3Q0-01 11 108381912 108381912 C G EXPH5 Missense_Mutation p.R1441T 0.30 tolerated(0.58) benign(0.074) TCGA-JX-A3Q0-01 11 108546337 108546337 C T DDX10 Nonsense_Mutation p.Q88* 0.35 TCGA-JX-A3Q0-01 11 118984685 118984685 C T C2CD2L Missense_Mutation p.S538F 0.36 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 11 122665486 122665486 G A UBASH3B Missense_Mutation p.E353K 0.29 tolerated(0.6) benign(0.08) TCGA-JX-A3Q0-01 11 124551305 124551305 G T SPA17 Nonsense_Mutation p.E59* 0.27 TCGA-JX-A3Q0-01 11 1269198 1269198 G C MUC5B Silent p.L3696L 0.71 TCGA-JX-A3Q0-01 11 1272287 1272287 C T MUC5B Missense_Mutation p.S4726F 0.43 unknown(0) TCGA-JX-A3Q0-01 11 134079287 134079287 G A NCAPD3 Missense_Mutation p.H218Y 0.27 tolerated(1) benign(0.002) TCGA-JX-A3Q0-01 11 1576517 1576517 G A DUSP8 3'UTR 0.31 TCGA-JX-A3Q0-01 11 17191131 17191131 C T PIK3C2A Missense_Mutation p.R53K 0.39 tolerated_low_confidence(0.95) benign(0.005) TCGA-JX-A3Q0-01 11 2424570 2424570 G C TSSC4 Missense_Mutation p.G236A 0.29 tolerated(0.77) benign(0.021) TCGA-JX-A3Q0-01 11 32948716 32948716 G A QSER1 5'UTR 0.31 TCGA-JX-A3Q0-01 11 33583270 33583270 G A KIAA1549L Nonsense_Mutation p.W1059* 0.13 TCGA-JX-A3Q0-01 11 44079866 44079866 G C ACCSL Splice_Site p.X443_splice 0.42 TCGA-JX-A3Q0-01 11 45869177 45869177 G A CRY2 Missense_Mutation p.G67R 0.43 tolerated(0.05) benign(0.216) TCGA-JX-A3Q0-01 11 4623468 4623468 C T TRIM68 Missense_Mutation p.E233K 0.21 tolerated(1) benign(0.001) TCGA-JX-A3Q0-01 11 46637691 46637691 C T HARBI1 Missense_Mutation p.E33K 0.30 deleterious(0.03) benign(0.022) TCGA-JX-A3Q0-01 11 46637694 46637694 C T HARBI1 Missense_Mutation p.D32N 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-JX-A3Q0-01 11 46637703 46637703 C T HARBI1 Missense_Mutation p.D29N 0.29 tolerated(0.46) benign(0.401) TCGA-JX-A3Q0-01 11 46637813 46637813 C A HARBI1 5'UTR 0.38 TCGA-JX-A3Q0-01 11 46690371 46690371 G C ATG13 Missense_Mutation p.E453Q 0.20 tolerated(0.52) benign(0.043) TCGA-JX-A3Q0-01 11 48285589 48285589 C T OR4X1 Silent p.F59F 0.34 TCGA-JX-A3Q0-01 11 5411548 5411548 A C OR51M1 Missense_Mutation p.K307T 0.33 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 11 5529679 5529679 G A UBQLN3 Silent p.S370S 0.41 TCGA-JX-A3Q0-01 11 55322127 55322127 C T OR4C15 Silent p.F115F 0.32 TCGA-JX-A3Q0-01 11 55761413 55761413 G A OR5F1 Missense_Mutation p.S230L 0.38 deleterious(0) possibly_damaging(0.804) TCGA-JX-A3Q0-01 11 55762043 55762043 G A OR5F1 Missense_Mutation p.T20M 0.31 tolerated(0.07) benign(0.41) TCGA-JX-A3Q0-01 11 56431445 56431445 C G OR5AR1 Missense_Mutation p.S95C 0.19 tolerated(0.16) benign(0.299) TCGA-JX-A3Q0-01 11 57099862 57099862 C T SSRP1 Missense_Mutation p.M289I 0.49 tolerated(0.11) benign(0.014) TCGA-JX-A3Q0-01 11 57319798 57319798 G T UBE2L6 3'UTR 0.41 TCGA-JX-A3Q0-01 11 57321968 57321968 C T UBE2L6 Silent p.Q84Q 0.21 TCGA-JX-A3Q0-01 11 5799592 5799592 G A OR52N5 Silent p.L91L 0.41 TCGA-JX-A3Q0-01 11 59611401 59611401 C T GIF Silent p.L69L 0.39 TCGA-JX-A3Q0-01 11 62292606 62292606 C T AHNAK Missense_Mutation p.D3095N 0.29 probably_damaging(0.947) TCGA-JX-A3Q0-01 11 62327819 62327819 C T EEF1G Nonsense_Mutation p.W322* 0.24 TCGA-JX-A3Q0-01 11 62373588 62373588 C G EML3 Missense_Mutation p.D535H 0.27 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 11 66113198 66113198 C G B3GNT1 3'UTR 0.20 TCGA-JX-A3Q0-01 11 66444408 66444408 G A RBM4B Missense_Mutation p.A48V 0.10 deleterious(0) probably_damaging(0.976) TCGA-JX-A3Q0-01 11 6650693 6650693 G A DCHS1 Silent p.I1717I 0.33 TCGA-JX-A3Q0-01 11 6898379 6898379 C T OR10A4 Silent p.F167F 0.43 TCGA-JX-A3Q0-01 11 7092489 7092489 G A NLRP14 Missense_Mutation p.D1078N 0.44 tolerated(0.31) benign(0.002) TCGA-JX-A3Q0-01 11 74340348 74340348 C G POLD3 Missense_Mutation p.S329C 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-JX-A3Q0-01 11 76868393 76868393 G A MYO7A Silent p.K268K 0.11 TCGA-JX-A3Q0-01 11 77705709 77705709 C T INTS4 5'UTR 0.12 TCGA-JX-A3Q0-01 11 78052811 78052811 C TT GAB2 Intron 0.31 TCGA-JX-A3Q0-01 11 799341 799341 G C PIDD Missense_Mutation p.S900W 0.10 deleterious_low_confidence(0) unknown(0) TCGA-JX-A3Q0-01 11 82444541 82444541 G C FAM181B Missense_Mutation p.I77M 0.33 deleterious(0) possibly_damaging(0.844) TCGA-JX-A3Q0-01 11 8251899 8251899 C T LMO1 Missense_Mutation p.E60K 0.17 deleterious(0) benign(0.16) TCGA-JX-A3Q0-01 11 85723350 85723350 T C PICALM Missense_Mutation p.Y211C 0.42 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 11 89892437 89892437 G A NAALAD2 Silent p.K307K 0.18 TCGA-JX-A3Q0-01 11 94906134 94906134 C T SESN3 3'UTR 0.38 TCGA-JX-A3Q0-01 12 101880137 101880137 G A SPIC Missense_Mutation p.R112Q 0.33 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 12 104393268 104393268 C G GLT8D2 Silent p.L103L 0.17 TCGA-JX-A3Q0-01 12 105455416 105455416 C T ALDH1L2 Missense_Mutation p.E346K 0.28 tolerated_low_confidence(0.06) benign(0.031) TCGA-JX-A3Q0-01 12 105520052 105520052 G A KIAA1033 Missense_Mutation p.G317E 0.30 deleterious(0.04) benign(0.291) TCGA-JX-A3Q0-01 12 10560316 10560316 C G KLRC4 Missense_Mutation p.R138T 0.05 tolerated(0.34) benign(0.004) TCGA-JX-A3Q0-01 12 109994739 109994739 G T MMAB 3'UTR 0.33 TCGA-JX-A3Q0-01 12 117907562 117907562 C T KSR2 Silent p.E917E 0.32 TCGA-JX-A3Q0-01 12 121454196 121454196 C T C12orf43 Missense_Mutation p.E28K 0.45 deleterious(0.03) benign(0.017) TCGA-JX-A3Q0-01 12 123200108 123200108 G T HCAR3 3'UTR 0.36 TCGA-JX-A3Q0-01 12 123200213 123200213 G C HCAR3 Missense_Mutation p.L358V 0.49 deleterious_low_confidence(0.01) benign(0.01) TCGA-JX-A3Q0-01 12 123804981 123804981 C T SBNO1 Missense_Mutation p.E889K 0.24 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 12 124397674 124397674 C T DNAH10 Silent p.L3270L 0.38 TCGA-JX-A3Q0-01 12 124413920 124413920 C G DNAH10 Missense_Mutation p.F4017L 0.29 possibly_damaging(0.895) TCGA-JX-A3Q0-01 12 12630173 12630173 G C DUSP16 Missense_Mutation p.S531C 0.33 deleterious(0.04) possibly_damaging(0.711) TCGA-JX-A3Q0-01 12 132448074 132448074 C G EP400 Intron 0.36 TCGA-JX-A3Q0-01 12 14794077 14794077 G A GUCY2C Silent p.I669I 0.29 TCGA-JX-A3Q0-01 12 22677523 22677523 G T C2CD5 Missense_Mutation p.H162N 0.28 deleterious(0.02) benign(0.028) TCGA-JX-A3Q0-01 12 40715870 40715870 G A LRRK2 Missense_Mutation p.R1735Q 0.38 deleterious(0) probably_damaging(0.93) TCGA-JX-A3Q0-01 12 42553613 42553613 G C YAF2 3'UTR 0.10 TCGA-JX-A3Q0-01 12 42853436 42853436 G C PRICKLE1 3'UTR 0.42 TCGA-JX-A3Q0-01 12 44161948 44161948 C T IRAK4 Missense_Mutation p.R12C 0.43 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 12 46231410 46231410 C T ARID2 Missense_Mutation p.S417L 0.49 tolerated(0.54) possibly_damaging(0.796) TCGA-JX-A3Q0-01 12 48369200 48369200 G C COL2A1 Silent p.L1262L 0.21 TCGA-JX-A3Q0-01 12 49433090 49433090 G A KMT2D Silent p.L2761L 0.65 TCGA-JX-A3Q0-01 12 49724818 49724818 C G TROAP Intron 0.28 TCGA-JX-A3Q0-01 12 50745808 50745808 G A FAM186A Missense_Mutation p.L1603F 0.27 tolerated(0.09) benign(0.221) TCGA-JX-A3Q0-01 12 52379000 52379000 A G ACVR1B Missense_Mutation p.D376G 0.41 deleterious(0) possibly_damaging(0.753) TCGA-JX-A3Q0-01 12 52647456 52647456 C T KRT7 3'Flank 0.38 TCGA-JX-A3Q0-01 12 52825340 52825340 G T KRT75 Nonsense_Mutation p.S286* 0.33 TCGA-JX-A3Q0-01 12 53459242 53459242 C G SPRYD3 3'UTR 0.43 TCGA-JX-A3Q0-01 12 53460460 53460460 G A SPRYD3 Silent p.F306F 0.65 TCGA-JX-A3Q0-01 12 53708178 53708178 G A AAAS Missense_Mutation p.S198F 0.37 tolerated(0.48) benign(0.187) TCGA-JX-A3Q0-01 12 54577640 54577640 C G SMUG1 Missense_Mutation p.E29Q 0.19 tolerated(0.19) benign(0.024) TCGA-JX-A3Q0-01 12 56359789 56359789 G A PMEL Silent p.L3L 0.36 TCGA-JX-A3Q0-01 12 56709831 56709831 G C CNPY2 5'UTR 0.38 TCGA-JX-A3Q0-01 12 57483098 57483098 G A NAB2 Missense_Mutation p.G15E 0.41 tolerated_low_confidence(0.43) benign(0.012) TCGA-JX-A3Q0-01 12 57884137 57884137 G A MARS Missense_Mutation p.G213E 0.35 tolerated(1) benign(0) TCGA-JX-A3Q0-01 12 58158263 58158263 G C CYP27B1 Nonsense_Mutation p.S345* 0.42 TCGA-JX-A3Q0-01 12 6058148 6058148 G A VWF 3'UTR 0.38 TCGA-JX-A3Q0-01 12 6101032 6101032 C G VWF Missense_Mutation p.E2251Q 0.07 deleterious(0.04) benign(0.016) TCGA-JX-A3Q0-01 12 64519864 64519864 G C SRGAP1 Missense_Mutation p.E778Q 0.26 tolerated(0.15) benign(0.014) TCGA-JX-A3Q0-01 12 64521827 64521827 G A SRGAP1 Silent p.R909R 0.13 TCGA-JX-A3Q0-01 12 6626091 6626091 G A NCAPD2 Missense_Mutation p.R362K 0.28 deleterious(0) probably_damaging(0.998) TCGA-JX-A3Q0-01 12 68719811 68719811 C T MDM1 Intron 0.47 TCGA-JX-A3Q0-01 12 7079948 7079948 C T PHB2 5'UTR 0.27 TCGA-JX-A3Q0-01 12 76748826 76748826 C T OSBPL8 3'UTR 0.62 TCGA-JX-A3Q0-01 12 77157999 77157999 G A ZDHHC17 5'UTR 0.59 TCGA-JX-A3Q0-01 12 78571084 78571084 C T NAV3 Missense_Mutation p.S1763F 0.35 deleterious(0.01) benign(0.038) TCGA-JX-A3Q0-01 13 107144520 107144520 C T EFNB2 3'UTR 0.12 TCGA-JX-A3Q0-01 13 109365049 109365049 C A MYO16 Silent p.L89L 0.26 TCGA-JX-A3Q0-01 13 109365057 109365057 C T MYO16 Missense_Mutation p.S92L 0.24 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 13 110859046 110859046 C T COL4A1 Missense_Mutation p.G275E 0.24 unknown(0) TCGA-JX-A3Q0-01 13 110859214 110859214 G A COL4A1 Nonsense_Mutation p.Q269* 0.31 TCGA-JX-A3Q0-01 13 114773065 114773065 C T RASA3 Silent p.S562S 0.19 TCGA-JX-A3Q0-01 13 25338448 25338448 G A RNF17 Missense_Mutation p.G36E 0.30 tolerated_low_confidence(0.13) benign(0.068) TCGA-JX-A3Q0-01 13 25670507 25670507 G A PABPC3 Silent p.V57V 0.42 TCGA-JX-A3Q0-01 13 31495779 31495779 G A MEDAG Missense_Mutation p.E195K 0.10 tolerated(0.23) probably_damaging(0.981) TCGA-JX-A3Q0-01 13 31495791 31495791 G A MEDAG Missense_Mutation p.D199N 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-JX-A3Q0-01 13 33859776 33859776 C G STARD13 5'UTR 0.78 TCGA-JX-A3Q0-01 13 36046550 36046550 C T NBEA Silent p.L2154L 0.11 TCGA-JX-A3Q0-01 13 36050078 36050078 G A MAB21L1 Silent p.L66L 0.29 TCGA-JX-A3Q0-01 13 36347765 36347765 C T DCLK1 3'UTR 0.25 TCGA-JX-A3Q0-01 13 42144794 42144794 C G VWA8 Missense_Mutation p.E1807Q 0.42 deleterious(0.02) possibly_damaging(0.483) TCGA-JX-A3Q0-01 13 44443506 44443506 C T CCDC122 Missense_Mutation p.D3N 0.34 tolerated_low_confidence(0.22) benign(0.036) TCGA-JX-A3Q0-01 13 45563722 45563722 G C GPALPP1 5'Flank 0.38 TCGA-JX-A3Q0-01 13 46124098 46124098 C G FAM194B Missense_Mutation p.E526Q 0.06 tolerated(0.12) benign(0.077) TCGA-JX-A3Q0-01 13 46942916 46942916 C G KIAA0226L Silent p.S190S 0.45 TCGA-JX-A3Q0-01 13 49030426 49030426 C A RB1 Nonsense_Mutation p.S634* 0.29 TCGA-JX-A3Q0-01 13 58208350 58208350 C T PCDH17 Missense_Mutation p.S557L 0.14 deleterious(0) benign(0.42) TCGA-JX-A3Q0-01 13 58208837 58208837 C T PCDH17 Silent p.L719L 0.30 TCGA-JX-A3Q0-01 13 76195958 76195958 C G RP11-173B14.5 Intron 0.23 TCGA-JX-A3Q0-01 13 84452926 84452926 G C SLITRK1 3'UTR 0.24 TCGA-JX-A3Q0-01 13 88330295 88330295 C T SLITRK5 Silent p.P884P 0.40 TCGA-JX-A3Q0-01 13 95672592 95672592 G C ABCC4 3'UTR 0.54 TCGA-JX-A3Q0-01 13 96438251 96438251 A C DNAJC3 Missense_Mutation p.E378D 0.28 tolerated(0.06) benign(0.026) TCGA-JX-A3Q0-01 13 96438258 96438258 G C DNAJC3 Missense_Mutation p.E381Q 0.27 tolerated(0.26) benign(0.038) TCGA-JX-A3Q0-01 13 98996094 98996094 G C FARP1 Missense_Mutation p.E84Q 0.24 tolerated(0.07) possibly_damaging(0.896) TCGA-JX-A3Q0-01 14 100774193 100774193 G A SLC25A29 5'Flank 0.16 TCGA-JX-A3Q0-01 14 100795778 100795778 C G SLC25A47 Missense_Mutation p.I241M 0.45 deleterious(0.03) probably_damaging(0.98) TCGA-JX-A3Q0-01 14 104026568 104026568 C T BAG5 Missense_Mutation p.G353S 0.26 tolerated(0.19) possibly_damaging(0.547) TCGA-JX-A3Q0-01 14 105405974 105405974 C T AHNAK2 Missense_Mutation p.D5272N 0.35 possibly_damaging(0.895) TCGA-JX-A3Q0-01 14 106307382 106307382 C T IGHD Silent p.L219L 0.36 TCGA-JX-A3Q0-01 14 106667821 106667821 C T IGHV3-20 Silent p.L37L 0.35 TCGA-JX-A3Q0-01 14 21780626 21780626 G A RPGRIP1 Missense_Mutation p.R371Q 0.41 deleterious(0.02) benign(0.16) TCGA-JX-A3Q0-01 14 21789436 21789436 C T RPGRIP1 Nonsense_Mutation p.Q496* 0.38 TCGA-JX-A3Q0-01 14 24550456 24550456 G C NRL Missense_Mutation p.L235V 0.29 tolerated_low_confidence(0.11) benign(0.004) TCGA-JX-A3Q0-01 14 24568910 24568910 G C PCK2 Missense_Mutation p.W332C 0.35 deleterious(0) probably_damaging(0.958) TCGA-JX-A3Q0-01 14 24601589 24601589 G A FITM1 Missense_Mutation p.E146K 0.42 deleterious(0.01) possibly_damaging(0.884) TCGA-JX-A3Q0-01 14 24845656 24845656 C T NFATC4 Missense_Mutation p.S801L 0.11 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-JX-A3Q0-01 14 31644182 31644182 G C HECTD1 Missense_Mutation p.Q180E 0.36 tolerated(0.26) benign(0.346) TCGA-JX-A3Q0-01 14 31644208 31644208 G A HECTD1 Missense_Mutation p.S171L 0.33 deleterious(0.01) possibly_damaging(0.829) TCGA-JX-A3Q0-01 14 38265554 38265554 C T TTC6 Nonsense_Mutation p.Q1283* 0.20 TCGA-JX-A3Q0-01 14 50074299 50074299 C G LRR1 Missense_Mutation p.S155C 0.15 deleterious(0) possibly_damaging(0.839) TCGA-JX-A3Q0-01 14 51561606 51561606 G A TRIM9 Missense_Mutation p.R18W 0.39 deleterious(0.01) probably_damaging(0.948) TCGA-JX-A3Q0-01 14 58737187 58737187 C T PSMA3 Silent p.L214L 0.36 TCGA-JX-A3Q0-01 14 63888774 63888774 G A PPP2R5E Silent p.D131D 0.36 TCGA-JX-A3Q0-01 14 64898256 64898256 C T MTHFD1 Missense_Mutation p.L440F 0.62 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 14 67769170 67769170 G A MPP5 Missense_Mutation p.R282Q 0.24 deleterious(0) probably_damaging(0.943) TCGA-JX-A3Q0-01 14 74062429 74062429 G C ACOT4 3'UTR 0.11 TCGA-JX-A3Q0-01 14 75052711 75052711 C A LTBP2 Nonsense_Mutation p.E226* 0.09 TCGA-JX-A3Q0-01 14 77492957 77492957 C T IRF2BPL Silent p.K393K 0.41 TCGA-JX-A3Q0-01 14 78139990 78139990 G C ALKBH1 3'UTR 0.33 TCGA-JX-A3Q0-01 14 80993257 80993257 G A CEP128 Nonsense_Mutation p.Q1010* 0.39 TCGA-JX-A3Q0-01 14 81259330 81259330 G A CEP128 Missense_Mutation p.S445L 0.39 tolerated(0.07) benign(0.009) TCGA-JX-A3Q0-01 14 86089093 86089093 A G FLRT2 Missense_Mutation p.D412G 0.44 tolerated(0.46) benign(0.066) TCGA-JX-A3Q0-01 14 94391701 94391701 G A FAM181A Silent p.A28A 0.38 TCGA-JX-A3Q0-01 14 94935613 94935613 C T SERPINA9 Missense_Mutation p.D207N 0.19 tolerated(0.44) benign(0.002) TCGA-JX-A3Q0-01 15 101121020 101121020 C T LINS Missense_Mutation p.E10K 0.17 deleterious(0.02) benign(0.001) TCGA-JX-A3Q0-01 15 102197143 102197143 G C TARSL2 Missense_Mutation p.Q748E 0.12 deleterious(0) probably_damaging(0.91) TCGA-JX-A3Q0-01 15 28510988 28510988 G A HERC2 Silent p.R577R 0.43 TCGA-JX-A3Q0-01 15 30112749 30112749 G A TJP1 Intron 0.50 TCGA-JX-A3Q0-01 15 34395013 34395013 G A PGBD4 Missense_Mutation p.R94K 0.32 tolerated(0.14) benign(0.008) TCGA-JX-A3Q0-01 15 34673586 34673586 G C GOLGA8A 3'UTR 0.17 TCGA-JX-A3Q0-01 15 34819807 34819807 G C GOLGA8B 3'UTR 0.24 TCGA-JX-A3Q0-01 15 35274573 35274573 G A ZNF770 Nonsense_Mutation p.Q355* 0.29 TCGA-JX-A3Q0-01 15 37188873 37188873 C T MEIS2 Missense_Mutation p.R331K 0.31 deleterious(0) probably_damaging(0.986) TCGA-JX-A3Q0-01 15 38643705 38643705 C T SPRED1 Missense_Mutation p.S392L 0.37 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 15 41064298 41064298 G A C15orf62 3'UTR 0.61 TCGA-JX-A3Q0-01 15 41192812 41192812 C T VPS18 Missense_Mutation p.S599L 0.32 deleterious(0) possibly_damaging(0.54) TCGA-JX-A3Q0-01 15 49076304 49076304 G C CEP152 Missense_Mutation p.S396C 0.06 tolerated(0.25) benign(0) TCGA-JX-A3Q0-01 15 51748512 51748512 G C DMXL2 Missense_Mutation p.Q2777E 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-JX-A3Q0-01 15 62207973 62207973 G C VPS13C Silent p.V2768V 0.43 TCGA-JX-A3Q0-01 15 66790039 66790039 C T SNAPC5 Missense_Mutation p.E11K 0.36 deleterious(0) unknown(0) TCGA-JX-A3Q0-01 15 68122618 68122618 C T SKOR1 Missense_Mutation p.P736S 0.35 tolerated_low_confidence(0.05) possibly_damaging(0.803) TCGA-JX-A3Q0-01 15 69335090 69335090 G C NOX5 Missense_Mutation p.G531A 0.24 tolerated(0.57) benign(0.044) TCGA-JX-A3Q0-01 15 70961363 70961363 C T UACA Missense_Mutation p.E554K 0.16 deleterious(0) probably_damaging(0.998) TCGA-JX-A3Q0-01 15 72073019 72073019 G A THSD4 3'UTR 0.51 TCGA-JX-A3Q0-01 15 73408941 73408941 C T NEO1 Missense_Mutation p.S64L 0.18 deleterious(0.04) benign(0.403) TCGA-JX-A3Q0-01 15 74290717 74290717 G A PML Missense_Mutation p.E168K 0.26 deleterious(0) possibly_damaging(0.792) TCGA-JX-A3Q0-01 15 75248172 75248172 C G RPP25 3'UTR 0.35 TCGA-JX-A3Q0-01 15 77473482 77473482 C T PEAK1 Missense_Mutation p.E263K 0.39 deleterious(0) probably_damaging(0.997) TCGA-JX-A3Q0-01 15 77777828 77777828 G A HMG20A 3'UTR 0.23 TCGA-JX-A3Q0-01 15 78755309 78755309 G A IREB2 Missense_Mutation p.R51Q 0.29 deleterious(0) possibly_damaging(0.559) TCGA-JX-A3Q0-01 15 78783062 78783062 C G IREB2 Missense_Mutation p.I761M 0.19 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 15 86201765 86201765 C G AKAP13 Intron 0.33 TCGA-JX-A3Q0-01 15 89400951 89400951 G A ACAN Missense_Mutation p.G1712E 0.30 tolerated(0.12) probably_damaging(1) TCGA-JX-A3Q0-01 15 89415302 89415302 G C ACAN Missense_Mutation p.D2392H 0.39 deleterious(0) possibly_damaging(0.576) TCGA-JX-A3Q0-01 16 10565998 10565998 G T ATF7IP2 Nonsense_Mutation p.E462* 0.27 TCGA-JX-A3Q0-01 16 11542909 11542909 C G CTD-3088G3.8 Missense_Mutation p.E1403Q 0.21 tolerated(0.39) unknown(0) TCGA-JX-A3Q0-01 16 1392586 1392586 C T BAIAP3 Missense_Mutation p.S374L 0.28 deleterious(0) probably_damaging(0.99) TCGA-JX-A3Q0-01 16 1392626 1392626 C T BAIAP3 Silent p.I387I 0.25 TCGA-JX-A3Q0-01 16 1470551 1470551 G A C16orf91 Missense_Mutation p.S189F 0.26 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-JX-A3Q0-01 16 16248553 16248553 G C ABCC6 Silent p.L1380L 0.23 TCGA-JX-A3Q0-01 16 1676140 1676140 G A CRAMP1L Silent p.K171K 0.20 TCGA-JX-A3Q0-01 16 1878612 1878612 G A FAHD1 Intron 0.15 TCGA-JX-A3Q0-01 16 18865998 18865999 - T SMG1 Frame_Shift_Ins p.T1488Nfs*31 0.27 TCGA-JX-A3Q0-01 16 18866113 18866113 C A SMG1 Nonsense_Mutation p.E1450* 0.30 TCGA-JX-A3Q0-01 16 2129132 2129132 C T TSC2 Silent p.L1022L 0.35 TCGA-JX-A3Q0-01 16 2129168 2129168 C G TSC2 Silent p.V1034V 0.29 TCGA-JX-A3Q0-01 16 2225536 2225536 G C TRAF7 Missense_Mutation p.K513N 0.33 tolerated(0.3) benign(0.328) TCGA-JX-A3Q0-01 16 2334395 2334395 G A ABCA3 Silent p.F1249F 0.20 TCGA-JX-A3Q0-01 16 23634403 23634403 C T PALB2 Silent p.L961L 0.24 TCGA-JX-A3Q0-01 16 242962 242962 C G LUC7L Missense_Mutation p.R247T 0.18 deleterious(0.03) unknown(0) TCGA-JX-A3Q0-01 16 24674572 24674572 G A AC012317.1 RNA 0.33 TCGA-JX-A3Q0-01 16 27079143 27079143 G A C16orf82 RNA 0.14 TCGA-JX-A3Q0-01 16 27079378 27079378 G C C16orf82 RNA 0.45 TCGA-JX-A3Q0-01 16 27481442 27481442 C T GTF3C1 Missense_Mutation p.E1601K 0.18 deleterious(0.01) possibly_damaging(0.728) TCGA-JX-A3Q0-01 16 27751796 27751796 C T KIAA0556 Silent p.V726V 0.36 TCGA-JX-A3Q0-01 16 28915931 28915931 C T RABEP2 3'UTR 0.18 TCGA-JX-A3Q0-01 16 29912882 29912882 C T ASPHD1 Missense_Mutation p.S197L 0.26 deleterious(0) possibly_damaging(0.694) TCGA-JX-A3Q0-01 16 30369222 30369222 G A TBC1D10B 3'UTR 0.29 TCGA-JX-A3Q0-01 16 30369268 30369268 G C TBC1D10B Missense_Mutation p.F808L 0.33 deleterious_low_confidence(0) benign(0.002) TCGA-JX-A3Q0-01 16 30390802 30390802 C T SEPT1 Silent p.G243G 0.25 TCGA-JX-A3Q0-01 16 30391340 30391340 C T SEPT1 Silent p.L196L 0.09 TCGA-JX-A3Q0-01 16 3040221 3040221 C T LINC00514 RNA 0.17 TCGA-JX-A3Q0-01 16 30674116 30674116 C T FBRS Missense_Mutation p.R331W 0.28 unknown(0) TCGA-JX-A3Q0-01 16 30999441 30999441 G A HSD3B7 Silent p.S349S 0.26 TCGA-JX-A3Q0-01 16 31091918 31091918 C G ZNF646 Missense_Mutation p.P1425A 0.33 tolerated(0.57) benign(0) TCGA-JX-A3Q0-01 16 31092086 31092086 C G ZNF646 Missense_Mutation p.Q1481E 0.42 tolerated(0.33) benign(0) TCGA-JX-A3Q0-01 16 31092798 31092798 C G ZNF646 Missense_Mutation p.S1718C 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-JX-A3Q0-01 16 31336831 31336831 C T ITGAM Missense_Mutation p.S840L 0.26 tolerated(0.21) possibly_damaging(0.767) TCGA-JX-A3Q0-01 16 3197904 3197904 C T CASP16 Silent p.I81I 0.23 TCGA-JX-A3Q0-01 16 3434520 3434520 G A ZSCAN32 Silent p.F179F 0.29 TCGA-JX-A3Q0-01 16 4027554 4027554 C T ADCY9 Missense_Mutation p.M919I 0.08 deleterious(0.01) benign(0.206) TCGA-JX-A3Q0-01 16 47732386 47732386 G A PHKB Missense_Mutation p.E1011K 0.21 tolerated(0.12) probably_damaging(0.984) TCGA-JX-A3Q0-01 16 49313279 49313279 C T CBLN1 3'UTR 0.35 TCGA-JX-A3Q0-01 16 53525642 53525642 C T AKTIP 3'UTR 0.20 TCGA-JX-A3Q0-01 16 57238710 57238710 G A RSPRY1 Missense_Mutation p.R47Q 0.27 deleterious(0.02) benign(0.108) TCGA-JX-A3Q0-01 16 57496588 57496588 C A POLR2C 5'UTR 0.35 TCGA-JX-A3Q0-01 16 57604363 57604363 C G GPR114 Missense_Mutation p.S375C 0.37 tolerated(0.08) possibly_damaging(0.617) TCGA-JX-A3Q0-01 16 57752288 57752288 G C CCDC135 Silent p.V369V 0.07 TCGA-JX-A3Q0-01 16 57937756 57937756 C T CNGB1 Missense_Mutation p.E922K 0.19 deleterious(0.02) benign(0.087) TCGA-JX-A3Q0-01 16 57957253 57957253 C T CNGB1 Missense_Mutation p.E523K 0.19 deleterious(0.04) possibly_damaging(0.692) TCGA-JX-A3Q0-01 16 58564156 58564156 G C CNOT1 Silent p.L2091L 0.22 TCGA-JX-A3Q0-01 16 66756463 66756463 G C DYNC1LI2 3'UTR 0.24 TCGA-JX-A3Q0-01 16 67233124 67233124 C T ELMO3 Silent p.L18L 0.29 TCGA-JX-A3Q0-01 16 67261022 67261022 C T TMEM208 5'UTR 0.12 TCGA-JX-A3Q0-01 16 67273340 67273340 C T FHOD1 Silent p.L73L 0.29 TCGA-JX-A3Q0-01 16 67962792 67962792 C G PSKH1 3'UTR 0.26 TCGA-JX-A3Q0-01 16 67963678 67963678 C A CTRL 3'UTR 0.29 TCGA-JX-A3Q0-01 16 67963690 67963690 C T CTRL 3'UTR 0.29 TCGA-JX-A3Q0-01 16 68862194 68862194 G A CDH1 Missense_Mutation p.G761E 0.33 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 16 69352823 69352823 C G VPS4A Missense_Mutation p.I147M 0.22 tolerated(0.09) benign(0.014) TCGA-JX-A3Q0-01 16 72110819 72110819 G A HPR Missense_Mutation p.D296N 0.18 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 16 72845491 72845491 C T ZFHX3 Silent p.E1283E 0.14 TCGA-JX-A3Q0-01 16 75148453 75148453 C T LDHD Silent p.L200L 0.42 TCGA-JX-A3Q0-01 16 775574 775574 G A CCDC78 Missense_Mutation p.R92W 0.18 tolerated(0.22) benign(0.007) TCGA-JX-A3Q0-01 16 78056465 78056465 C T CLEC3A 5'UTR 0.48 TCGA-JX-A3Q0-01 16 81078778 81078778 C G ATMIN 3'UTR 0.21 TCGA-JX-A3Q0-01 16 81703836 81703836 G A CMIP Silent p.K305K 0.19 TCGA-JX-A3Q0-01 16 88499969 88499969 G C ZNF469 Missense_Mutation p.E2003Q 0.27 benign(0.011) TCGA-JX-A3Q0-01 16 88697525 88697525 C T ZC3H18 Missense_Mutation p.P894S 0.29 tolerated_low_confidence(0.05) probably_damaging(0.941) TCGA-JX-A3Q0-01 16 88779087 88779087 G A CTU2 Missense_Mutation p.E171K 0.25 tolerated(0.75) benign(0.001) TCGA-JX-A3Q0-01 16 88876153 88876153 C T APRT Missense_Mutation p.E166K 0.28 tolerated(0.19) benign(0.106) TCGA-JX-A3Q0-01 16 89597205 89597205 G C SPG7 Missense_Mutation p.D326H 0.29 tolerated(0.17) probably_damaging(1) TCGA-JX-A3Q0-01 16 89785456 89785456 C G VPS9D1 Missense_Mutation p.E52Q 0.22 tolerated(0.11) probably_damaging(0.996) TCGA-JX-A3Q0-01 16 89951063 89951063 C T TCF25 Missense_Mutation p.S143L 0.38 tolerated(0.32) benign(0.001) TCGA-JX-A3Q0-01 17 11895970 11895970 C T ZNF18 Silent p.L59L 0.25 TCGA-JX-A3Q0-01 17 11984676 11984676 G A MAP2K4 Silent p.E74E 0.45 TCGA-JX-A3Q0-01 17 1370785 1370785 G A MYO1C Silent p.I1018I 0.20 TCGA-JX-A3Q0-01 17 15341337 15341337 G A CDRT4 Missense_Mutation p.S70F 0.38 tolerated(0.12) possibly_damaging(0.483) TCGA-JX-A3Q0-01 17 17399552 17399552 G A RASD1 5'UTR 0.31 TCGA-JX-A3Q0-01 17 17896144 17896144 G A LRRC48 Silent p.E170E 0.14 TCGA-JX-A3Q0-01 17 17896148 17896148 G A LRRC48 Missense_Mutation p.E172K 0.15 tolerated(0.1) benign(0.097) TCGA-JX-A3Q0-01 17 18907093 18907093 G A FAM83G Nonsense_Mutation p.Q88* 0.30 TCGA-JX-A3Q0-01 17 2283484 2283484 C T SGSM2 3'UTR 0.17 TCGA-JX-A3Q0-01 17 25877716 25877716 G A KSR1 5'UTR 0.26 TCGA-JX-A3Q0-01 17 26960564 26960564 C A KIAA0100 Intron 0.42 TCGA-JX-A3Q0-01 17 27076945 27076945 G A TRAF4 3'UTR 0.55 TCGA-JX-A3Q0-01 17 3301252 3301252 C T OR1E1 Silent p.L151L 0.37 TCGA-JX-A3Q0-01 17 36358162 36358162 C T RP11-1407O15.2 Intron 0.07 TCGA-JX-A3Q0-01 17 38122133 38122133 G C GSDMA Missense_Mutation p.E65Q 0.32 tolerated(0.06) benign(0.209) TCGA-JX-A3Q0-01 17 39977282 39977282 G A FKBP10 Missense_Mutation p.C447Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 17 40317508 40317508 G C KCNH4 Missense_Mutation p.R682G 0.57 tolerated(0.22) possibly_damaging(0.871) TCGA-JX-A3Q0-01 17 43138707 43138707 G A NMT1 Missense_Mutation p.E4K 0.30 deleterious_low_confidence(0.04) benign(0.069) TCGA-JX-A3Q0-01 17 4351514 4351514 G A SPNS3 Missense_Mutation p.R229Q 0.39 tolerated(0.12) possibly_damaging(0.823) TCGA-JX-A3Q0-01 17 44101491 44101491 C T MAPT Missense_Mutation p.T762M 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-JX-A3Q0-01 17 4578584 4578584 G A PELP1 Missense_Mutation p.S381F 0.41 probably_damaging(0.972) TCGA-JX-A3Q0-01 17 46622224 46622224 G A HOXB2 Missense_Mutation p.S17L 0.35 deleterious(0) possibly_damaging(0.734) TCGA-JX-A3Q0-01 17 47074977 47074977 C T IGF2BP1 5'UTR 0.29 TCGA-JX-A3Q0-01 17 4863200 4863200 C G SPAG7 Missense_Mutation p.Q143H 0.50 tolerated(0.1) benign(0.321) TCGA-JX-A3Q0-01 17 4871619 4871619 C A CAMTA2 3'UTR 0.41 TCGA-JX-A3Q0-01 17 5076112 5076112 G C USP6 Missense_Mutation p.D1354H 0.23 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-JX-A3Q0-01 17 51902431 51902431 G A KIF2B 3'UTR 0.81 TCGA-JX-A3Q0-01 17 5257750 5257750 C G RABEP1 Missense_Mutation p.Q354E 0.33 tolerated(0.6) benign(0.008) TCGA-JX-A3Q0-01 17 5440179 5440179 G A NLRP1 Silent p.F984F 0.38 TCGA-JX-A3Q0-01 17 56343535 56343535 G A LPO Missense_Mutation p.R514Q 0.33 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 17 56387888 56387888 C T BZRAP1 Silent p.L1228L 0.49 TCGA-JX-A3Q0-01 17 56606647 56606647 C T SEPT4 Intron 0.40 TCGA-JX-A3Q0-01 17 57292169 57292169 C T SMG8 Nonsense_Mutation p.Q928* 0.45 TCGA-JX-A3Q0-01 17 57889049 57889049 G C VMP1 Missense_Mutation p.D272H 0.07 deleterious(0) probably_damaging(0.997) TCGA-JX-A3Q0-01 17 58520765 58520765 C T APPBP2 3'UTR 0.34 TCGA-JX-A3Q0-01 17 58521030 58521030 C T APPBP2 3'UTR 0.37 TCGA-JX-A3Q0-01 17 58521216 58521216 C T APPBP2 3'UTR 0.41 TCGA-JX-A3Q0-01 17 60642387 60642387 G C TLK2 Missense_Mutation p.R286T 0.31 deleterious(0) probably_damaging(0.996) TCGA-JX-A3Q0-01 17 63534325 63534325 C T AXIN2 Missense_Mutation p.R399Q 0.42 tolerated(0.28) benign(0.004) TCGA-JX-A3Q0-01 17 71354234 71354234 G C SDK2 Missense_Mutation p.I1859M 0.13 deleterious(0) possibly_damaging(0.852) TCGA-JX-A3Q0-01 17 7147297 7147297 G C CTDNEP1 3'UTR 0.30 TCGA-JX-A3Q0-01 17 72368270 72368270 G C GPR142 Missense_Mutation p.R307T 0.33 tolerated(0.45) benign(0) TCGA-JX-A3Q0-01 17 72368289 72368289 C G GPR142 Silent p.L313L 0.50 TCGA-JX-A3Q0-01 17 75398439 75398439 C T SEPT9 Silent p.I125I 0.57 TCGA-JX-A3Q0-01 17 7576615 7576615 C G TP53 Intron 0.36 TCGA-JX-A3Q0-01 17 7576889 7576889 C G TP53 Missense_Mutation p.K319N 0.44 deleterious(0.04) probably_damaging(0.984) TCGA-JX-A3Q0-01 17 7577077 7577077 C G TP53 Missense_Mutation p.E287D 0.38 tolerated(0.24) benign(0.059) TCGA-JX-A3Q0-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.31 deleterious(0.04) possibly_damaging(0.83) TCGA-JX-A3Q0-01 17 76676417 76676417 C G CYTH1 Missense_Mutation p.E325Q 0.17 deleterious(0) probably_damaging(0.97) TCGA-JX-A3Q0-01 17 7669719 7669719 G C DNAH2 Missense_Mutation p.E1199Q 0.33 benign(0.186) TCGA-JX-A3Q0-01 17 78086747 78086747 C T GAA Missense_Mutation p.S654L 0.42 deleterious(0) benign(0.291) TCGA-JX-A3Q0-01 17 7814210 7814210 G A CHD3 Missense_Mutation p.A1993T 0.39 possibly_damaging(0.483) TCGA-JX-A3Q0-01 17 79667754 79667754 C T HGS Silent p.L682L 0.19 TCGA-JX-A3Q0-01 17 79801944 79801944 C T P4HB Missense_Mutation p.E491K 0.24 tolerated(0.1) possibly_damaging(0.549) TCGA-JX-A3Q0-01 17 79801950 79801950 C T P4HB Missense_Mutation p.E489K 0.20 tolerated(0.15) probably_damaging(0.953) TCGA-JX-A3Q0-01 17 79973128 79973128 C T ASPSCR1 Missense_Mutation p.P511S 0.13 tolerated_low_confidence(0.35) benign(0.135) TCGA-JX-A3Q0-01 17 80401492 80401492 G A C17orf62 3'UTR 0.29 TCGA-JX-A3Q0-01 17 80401499 80401499 C T C17orf62 3'UTR 0.27 TCGA-JX-A3Q0-01 17 8197858 8197858 C T SLC25A35 Missense_Mutation p.G90R 0.57 tolerated(0.35) benign(0.005) TCGA-JX-A3Q0-01 17 8218800 8218800 C G ARHGEF15 Missense_Mutation p.F443L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-JX-A3Q0-01 18 10671207 10671207 C T PIEZO2 3'Flank 0.38 TCGA-JX-A3Q0-01 18 10762946 10762946 C G PIEZO2 Missense_Mutation p.E1008Q 0.47 tolerated(0.58) benign(0.003) TCGA-JX-A3Q0-01 18 14105020 14105020 G A ZNF519 Nonsense_Mutation p.Q507* 0.50 TCGA-JX-A3Q0-01 18 14105110 14105110 G A ZNF519 Nonsense_Mutation p.Q477* 0.54 TCGA-JX-A3Q0-01 18 14822628 14822628 C T ANKRD30B Missense_Mutation p.L780F 0.14 deleterious(0.01) benign(0.368) TCGA-JX-A3Q0-01 18 21180653 21180653 G A ANKRD29 3'UTR 0.36 TCGA-JX-A3Q0-01 18 29049278 29049278 C A DSG3 Silent p.I621I 0.27 TCGA-JX-A3Q0-01 18 29126264 29126264 C T DSG2 Missense_Mutation p.S972F 0.37 deleterious(0.01) possibly_damaging(0.723) TCGA-JX-A3Q0-01 18 32397954 32397954 G A DTNA Intron 0.45 TCGA-JX-A3Q0-01 18 34340624 34340624 G A FHOD3 Silent p.L1318L 0.50 TCGA-JX-A3Q0-01 18 7034552 7034552 C T LAMA1 Silent p.L659L 0.45 TCGA-JX-A3Q0-01 18 70526220 70526220 G A NETO1 Nonsense_Mutation p.R104* 0.32 TCGA-JX-A3Q0-01 19 10197029 10197029 G A C19orf66 5'UTR 0.27 TCGA-JX-A3Q0-01 19 10362929 10362929 G A MRPL4 5'UTR 0.23 TCGA-JX-A3Q0-01 19 10369970 10369970 G A MRPL4 Intron 0.21 TCGA-JX-A3Q0-01 19 10370058 10370058 G C MRPL4 Intron 0.24 TCGA-JX-A3Q0-01 19 10394332 10394332 C T ICAM1 Silent p.V169V 0.16 TCGA-JX-A3Q0-01 19 10663831 10663831 G A ATG4D 3'UTR 0.33 TCGA-JX-A3Q0-01 19 1119067 1119067 G A SBNO2 Silent p.I490I 0.25 TCGA-JX-A3Q0-01 19 11332632 11332632 C T DOCK6 Missense_Mutation p.D1149N 0.23 deleterious(0) probably_damaging(0.964) TCGA-JX-A3Q0-01 19 12061171 12061171 C T ZNF700 3'UTR 0.16 TCGA-JX-A3Q0-01 19 13246877 13246877 G A NACC1 Missense_Mutation p.E286K 0.08 deleterious(0.03) possibly_damaging(0.818) TCGA-JX-A3Q0-01 19 1356398 1356398 G C MUM1 Missense_Mutation p.D4H 0.12 deleterious(0) probably_damaging(0.997) TCGA-JX-A3Q0-01 19 1371277 1371277 G A MUM1 Intron 0.20 TCGA-JX-A3Q0-01 19 14261443 14261443 C G LPHN1 3'UTR 0.24 TCGA-JX-A3Q0-01 19 14513660 14513660 G A CD97 Missense_Mutation p.D479N 0.32 tolerated(0.51) benign(0) TCGA-JX-A3Q0-01 19 15079227 15079227 C T SLC1A6 Missense_Mutation p.G146S 0.23 deleterious(0) possibly_damaging(0.597) TCGA-JX-A3Q0-01 19 15770127 15770127 C T CYP4F3 Missense_Mutation p.R499C 0.25 deleterious(0.03) benign(0.12) TCGA-JX-A3Q0-01 19 1581162 1581162 C T MBD3 Silent p.K202K 0.33 TCGA-JX-A3Q0-01 19 1619354 1619354 G A TCF3 Silent p.F429F 0.08 TCGA-JX-A3Q0-01 19 16620604 16620604 G A C19orf44 Missense_Mutation p.E482K 0.18 tolerated(0.12) benign(0.05) TCGA-JX-A3Q0-01 19 17471630 17471630 C T PLVAP Missense_Mutation p.M397I 0.31 tolerated(0.41) benign(0.001) TCGA-JX-A3Q0-01 19 17716962 17716962 G C UNC13A Missense_Mutation p.I1671M 0.17 deleterious(0) probably_damaging(0.996) TCGA-JX-A3Q0-01 19 17751455 17751455 G A UNC13A Silent p.L884L 0.32 TCGA-JX-A3Q0-01 19 1817703 1817703 C T REXO1 Intron 0.24 TCGA-JX-A3Q0-01 19 18391875 18391875 G T JUND Missense_Mutation p.F140L 0.25 deleterious(0) possibly_damaging(0.812) TCGA-JX-A3Q0-01 19 18391926 18391926 G A JUND Silent p.F123F 0.29 TCGA-JX-A3Q0-01 19 18794487 18794487 G C CRTC1 5'Flank 0.46 TCGA-JX-A3Q0-01 19 19136583 19136583 C G SUGP2 Missense_Mutation p.D192H 0.24 deleterious(0) probably_damaging(0.976) TCGA-JX-A3Q0-01 19 1918921 1918921 C T SCAMP4 Silent p.F109F 0.08 TCGA-JX-A3Q0-01 19 20044654 20044654 C A ZNF93 Missense_Mutation p.S297Y 0.17 tolerated(0.46) benign(0.097) TCGA-JX-A3Q0-01 19 20308812 20308812 G A ZNF486 Silent p.E431E 0.24 TCGA-JX-A3Q0-01 19 2102157 2102157 G A AP3D1 3'UTR 0.23 TCGA-JX-A3Q0-01 19 2102253 2102253 G C AP3D1 Silent p.V1189V 0.24 TCGA-JX-A3Q0-01 19 21131586 21131586 A G ZNF85 Missense_Mutation p.E89G 0.09 deleterious(0.04) benign(0.026) TCGA-JX-A3Q0-01 19 21712561 21712561 G A ZNF429 Silent p.E35E 0.21 TCGA-JX-A3Q0-01 19 21720389 21720389 G A ZNF429 Missense_Mutation p.E512K 0.25 tolerated(0.21) probably_damaging(0.956) TCGA-JX-A3Q0-01 19 22271810 22271810 C G ZNF257 Missense_Mutation p.Q420E 0.26 tolerated(0.45) benign(0) TCGA-JX-A3Q0-01 19 2901023 2901023 G C ZNF57 5'UTR 0.33 TCGA-JX-A3Q0-01 19 35175249 35175249 G C ZNF302 Missense_Mutation p.V103L 0.32 tolerated(0.69) benign(0.002) TCGA-JX-A3Q0-01 19 37211354 37211354 C T ZNF567 Silent p.L545L 0.24 TCGA-JX-A3Q0-01 19 38314525 38314525 G C CTD-2554C21.2 RNA 0.27 TCGA-JX-A3Q0-01 19 38912755 38912755 C T RASGRP4 Missense_Mutation p.R21Q 0.25 tolerated(0.11) benign(0.033) TCGA-JX-A3Q0-01 19 39228910 39228910 G A CAPN12 Intron 0.33 TCGA-JX-A3Q0-01 19 39879801 39879801 C T PAF1 Missense_Mutation p.E167K 0.28 tolerated(0.5) possibly_damaging(0.484) TCGA-JX-A3Q0-01 19 40030060 40030060 G C EID2 Missense_Mutation p.I220M 0.09 tolerated(0.06) possibly_damaging(0.506) TCGA-JX-A3Q0-01 19 40395801 40395801 C T FCGBP Intron 0.14 TCGA-JX-A3Q0-01 19 40421422 40421422 G A FCGBP Silent p.V833V 0.21 TCGA-JX-A3Q0-01 19 40832266 40832266 G A C19orf47 Silent p.I226I 0.19 TCGA-JX-A3Q0-01 19 41349719 41349719 C A CYP2A6 Missense_Mutation p.M489I 0.08 benign(0.032) TCGA-JX-A3Q0-01 19 41381616 41381616 C A CYP2A7 Missense_Mutation p.M489I 0.24 tolerated(0.38) benign(0.032) TCGA-JX-A3Q0-01 19 41386426 41386426 C T CYP2A7 Missense_Mutation p.E151K 0.27 deleterious(0.01) probably_damaging(0.953) TCGA-JX-A3Q0-01 19 41386523 41386523 G A CYP2A7 Silent p.F118F 0.25 TCGA-JX-A3Q0-01 19 41813266 41813266 G C HNRNPUL1 3'UTR 0.19 TCGA-JX-A3Q0-01 19 42364896 42364896 C G RPS19 Missense_Mutation p.L18V 0.29 tolerated(0.13) benign(0.26) TCGA-JX-A3Q0-01 19 42594191 42594191 G T POU2F2 3'Flank 0.25 TCGA-JX-A3Q0-01 19 43708314 43708314 G A PSG4 Missense_Mutation p.L52F 0.40 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 19 44079728 44079728 G A XRCC1 5'UTR 0.23 TCGA-JX-A3Q0-01 19 44982160 44982160 G A ZNF180 Nonsense_Mutation p.Q180* 0.30 TCGA-JX-A3Q0-01 19 4513036 4513036 C T PLIN4 Missense_Mutation p.M298I 0.16 tolerated(0.11) benign(0.004) TCGA-JX-A3Q0-01 19 4550843 4550843 C T SEMA6B Silent p.T363T 0.24 TCGA-JX-A3Q0-01 19 45567797 45567797 C T CLASRP Missense_Mutation p.R440W 0.55 deleterious_low_confidence(0.01) unknown(0) TCGA-JX-A3Q0-01 19 45849946 45849946 G C KLC3 Missense_Mutation p.E135Q 0.21 tolerated(1) benign(0.006) TCGA-JX-A3Q0-01 19 47200444 47200444 G T PRKD2 Missense_Mutation p.F429L 0.26 deleterious(0.02) benign(0.008) TCGA-JX-A3Q0-01 19 47504562 47504562 C G ARHGAP35 3'UTR 0.07 TCGA-JX-A3Q0-01 19 47588399 47588399 G T ZC3H4 Silent p.R341R 0.12 TCGA-JX-A3Q0-01 19 48343195 48343195 C G CRX Missense_Mutation p.Q291E 0.17 deleterious(0.03) possibly_damaging(0.757) TCGA-JX-A3Q0-01 19 49436950 49436950 G C DHDH 5'UTR 0.12 TCGA-JX-A3Q0-01 19 49632266 49632266 G C PPFIA3 Missense_Mutation p.E168D 0.19 deleterious(0) probably_damaging(0.971) TCGA-JX-A3Q0-01 19 49656574 49656574 G C HRC Missense_Mutation p.Q616E 0.12 deleterious(0.05) benign(0.057) TCGA-JX-A3Q0-01 19 50209326 50209326 C G CPT1C Missense_Mutation p.H375Q 0.22 tolerated(0.06) benign(0.02) TCGA-JX-A3Q0-01 19 50399241 50399241 C T IL4I1 Missense_Mutation p.R50H 0.35 tolerated(0.68) benign(0.001) TCGA-JX-A3Q0-01 19 50512551 50512551 G A VRK3 Silent p.F77F 0.20 TCGA-JX-A3Q0-01 19 50939936 50939936 C T MYBPC2 Silent p.L136L 0.15 TCGA-JX-A3Q0-01 19 51021572 51021572 G A LRRC4B Silent p.S466S 0.31 TCGA-JX-A3Q0-01 19 5243946 5243946 G C PTPRS Silent p.L512L 0.17 TCGA-JX-A3Q0-01 19 52496447 52496447 C T ZNF615 Missense_Mutation p.E639K 0.16 deleterious(0.04) benign(0.435) TCGA-JX-A3Q0-01 19 52579301 52579301 G A ZNF841 Silent p.I89I 0.16 TCGA-JX-A3Q0-01 19 5265094 5265094 C G PTPRS Missense_Mutation p.E165Q 0.08 tolerated(0.08) possibly_damaging(0.741) TCGA-JX-A3Q0-01 19 53644143 53644143 G C ZNF347 Missense_Mutation p.I647M 0.33 deleterious(0) probably_damaging(0.981) TCGA-JX-A3Q0-01 19 53855572 53855572 G A ZNF845 Silent p.E548E 0.19 TCGA-JX-A3Q0-01 19 54627905 54627905 C T PRPF31 Missense_Mutation p.S242F 0.16 deleterious(0) probably_damaging(0.994) TCGA-JX-A3Q0-01 19 54659296 54659296 C T LENG1 3'UTR 0.21 TCGA-JX-A3Q0-01 19 54659453 54659453 C T LENG1 3'UTR 0.14 TCGA-JX-A3Q0-01 19 54664211 54664211 C T TMC4 Missense_Mutation p.R688K 0.34 deleterious(0) benign(0.065) TCGA-JX-A3Q0-01 19 54664213 54664213 C T TMC4 Silent p.Q687Q 0.34 TCGA-JX-A3Q0-01 19 54672253 54672253 G A TMC4 Missense_Mutation p.S205L 0.36 tolerated(0.2) benign(0.039) TCGA-JX-A3Q0-01 19 54972773 54972773 C A LENG8 3'UTR 0.29 TCGA-JX-A3Q0-01 19 55591881 55591881 G A EPS8L1 Intron 0.14 TCGA-JX-A3Q0-01 19 55690439 55690439 G C SYT5 5'UTR 0.35 TCGA-JX-A3Q0-01 19 55876899 55876899 C T IL11 3'UTR 0.15 TCGA-JX-A3Q0-01 19 56223837 56223837 C G NLRP9 Missense_Mutation p.R874T 0.43 deleterious(0.05) benign(0.428) TCGA-JX-A3Q0-01 19 56244056 56244056 G A NLRP9 Nonsense_Mutation p.Q381* 0.08 TCGA-JX-A3Q0-01 19 56572782 56572782 C T NLRP5 Missense_Mutation p.P1164L 0.24 deleterious(0.03) possibly_damaging(0.627) TCGA-JX-A3Q0-01 19 57036445 57036445 C G ZNF471 Missense_Mutation p.Q337E 0.27 deleterious(0) probably_damaging(0.949) TCGA-JX-A3Q0-01 19 57774067 57774067 G C CTC-444N24.8 RNA 0.24 TCGA-JX-A3Q0-01 19 5783184 5783184 G A PRR22 Silent p.F358F 0.14 TCGA-JX-A3Q0-01 19 57889526 57889526 C T ZNF547 Silent p.L394L 0.29 TCGA-JX-A3Q0-01 19 57967165 57967165 C T VN1R1 Missense_Mutation p.M230I 0.41 tolerated(0.79) benign(0.017) TCGA-JX-A3Q0-01 19 58017950 58017950 C G ZNF773 Missense_Mutation p.L163V 0.08 tolerated(0.06) benign(0.205) TCGA-JX-A3Q0-01 19 58420610 58420610 G C ZNF417 Missense_Mutation p.H346D 0.16 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 19 58718433 58718433 G A ZNF274 Missense_Mutation p.E201K 0.10 deleterious(0) probably_damaging(0.986) TCGA-JX-A3Q0-01 19 58806608 58806608 G C ZNF8 Missense_Mutation p.Q478H 0.20 deleterious(0.02) benign(0.306) TCGA-JX-A3Q0-01 19 58851029 58851029 C T ZSCAN22 3'UTR 0.28 TCGA-JX-A3Q0-01 19 58904758 58904758 C G RPS5 Missense_Mutation p.I117M 0.22 deleterious(0.05) possibly_damaging(0.831) TCGA-JX-A3Q0-01 19 5951508 5951508 C A RANBP3 Nonsense_Mutation p.E60* 0.33 TCGA-JX-A3Q0-01 19 6417780 6417780 C G KHSRP Missense_Mutation p.D351H 0.06 deleterious(0) probably_damaging(0.969) TCGA-JX-A3Q0-01 19 6418800 6418800 C T KHSRP Silent p.Q231Q 0.10 TCGA-JX-A3Q0-01 19 7116811 7116811 G A INSR 3'UTR 0.23 TCGA-JX-A3Q0-01 19 7964444 7964444 C T LRRC8E Missense_Mutation p.S346F 0.36 tolerated(0.62) probably_damaging(0.991) TCGA-JX-A3Q0-01 19 812052 812052 G A PTBP1 3'UTR 0.19 TCGA-JX-A3Q0-01 19 8670211 8670211 T A ADAMTS10 Missense_Mutation p.I41F 0.39 tolerated(0.08) probably_damaging(0.971) TCGA-JX-A3Q0-01 1 10328298 10328298 G A KIF1B Missense_Mutation p.E233K 0.17 tolerated(0.2) benign(0.028) TCGA-JX-A3Q0-01 1 10459146 10459146 C T PGD 5'UTR 0.43 TCGA-JX-A3Q0-01 1 10713410 10713410 C T CASZ1 Intron 0.14 TCGA-JX-A3Q0-01 1 107599582 107599582 G A PRMT6 Missense_Mutation p.R82Q 0.20 tolerated(0.34) benign(0.183) TCGA-JX-A3Q0-01 1 109517212 109517212 G A WDR47 Missense_Mutation p.H863Y 0.17 tolerated(1) probably_damaging(0.999) TCGA-JX-A3Q0-01 1 110135479 110135479 T G GNAI3 3'UTR 0.27 TCGA-JX-A3Q0-01 1 110149024 110149024 C G GNAT2 Missense_Mutation p.E166Q 0.37 deleterious(0.03) benign(0.128) TCGA-JX-A3Q0-01 1 110655146 110655146 C T UBL4B 5'UTR 0.28 TCGA-JX-A3Q0-01 1 111147002 111147002 C T KCNA2 Missense_Mutation p.E135K 0.38 deleterious(0.02) possibly_damaging(0.475) TCGA-JX-A3Q0-01 1 114456243 114456243 C T DCLRE1B 3'UTR 0.15 TCGA-JX-A3Q0-01 1 116380715 116380715 G T NHLH2 Missense_Mutation p.F93L 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-JX-A3Q0-01 1 117529726 117529726 C T PTGFRN 3'UTR 0.21 TCGA-JX-A3Q0-01 1 11894623 11894623 G A CLCN6 Nonsense_Mutation p.W590* 0.38 TCGA-JX-A3Q0-01 1 1238334 1238334 C T ACAP3 Missense_Mutation p.D83N 0.20 tolerated(0.12) benign(0.017) TCGA-JX-A3Q0-01 1 1246426 1246426 C G PUSL1 Silent p.L279L 0.25 TCGA-JX-A3Q0-01 1 137885 137885 G A AL627309.1 3'UTR 0.10 TCGA-JX-A3Q0-01 1 14105433 14105433 C T PRDM2 Silent p.I381I 0.24 TCGA-JX-A3Q0-01 1 14105434 14105434 C T PRDM2 Missense_Mutation p.H382Y 0.24 probably_damaging(1) TCGA-JX-A3Q0-01 1 149859407 149859407 G A HIST2H2AB Silent p.S20S 0.29 TCGA-JX-A3Q0-01 1 150053549 150053549 C T VPS45 Silent p.F271F 0.19 TCGA-JX-A3Q0-01 1 150789274 150789274 C A ARNT Nonsense_Mutation p.E598* 0.22 TCGA-JX-A3Q0-01 1 150807072 150807072 G C ARNT Missense_Mutation p.Q249E 0.19 deleterious(0.01) probably_damaging(0.926) TCGA-JX-A3Q0-01 1 151508255 151508255 G A CGN Splice_Site p.X1027_splice 0.18 TCGA-JX-A3Q0-01 1 151509793 151509793 G A CGN Missense_Mutation p.E1195K 0.32 deleterious(0) probably_damaging(0.997) TCGA-JX-A3Q0-01 1 152281157 152281157 G A FLG Nonsense_Mutation p.Q2069* 0.18 TCGA-JX-A3Q0-01 1 152327647 152327647 C G FLG2 Missense_Mutation p.G872A 0.27 unknown(0) TCGA-JX-A3Q0-01 1 152944804 152944804 C T SPRR4 3'UTR 0.22 TCGA-JX-A3Q0-01 1 153700887 153700887 C T INTS3 5'UTR 0.50 TCGA-JX-A3Q0-01 1 154130022 154130022 C T NUP210L 5'Flank 0.27 TCGA-JX-A3Q0-01 1 154201088 154201088 C T UBAP2L Intron 0.24 TCGA-JX-A3Q0-01 1 155007000 155007000 C G DCST1 Missense_Mutation p.L51V 0.23 deleterious(0.02) possibly_damaging(0.844) TCGA-JX-A3Q0-01 1 155307410 155307410 C G ASH1L 3'UTR 0.27 TCGA-JX-A3Q0-01 1 155581080 155581080 G C MSTO1 Missense_Mutation p.E122Q 0.16 tolerated(0.22) benign(0.002) TCGA-JX-A3Q0-01 1 155735213 155735213 C G GON4L Missense_Mutation p.E1351Q 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-JX-A3Q0-01 1 155735229 155735229 A G GON4L Silent p.C1345C 0.19 TCGA-JX-A3Q0-01 1 155735273 155735273 C G GON4L Missense_Mutation p.E1331Q 0.23 deleterious_low_confidence(0) benign(0.006) TCGA-JX-A3Q0-01 1 155870325 155870325 C T RIT1 Missense_Mutation p.D189N 0.16 tolerated(0.1) probably_damaging(0.998) TCGA-JX-A3Q0-01 1 155899505 155899505 C A KIAA0907 Nonsense_Mutation p.E128* 0.15 TCGA-JX-A3Q0-01 1 155899522 155899522 C A KIAA0907 Missense_Mutation p.R122L 0.17 deleterious(0) probably_damaging(0.996) TCGA-JX-A3Q0-01 1 15627738 15627738 G A FHAD1 5'Flank 0.27 TCGA-JX-A3Q0-01 1 156697518 156697518 C G ISG20L2 5'UTR 0.25 TCGA-JX-A3Q0-01 1 156712542 156712542 C T HDGF 3'Flank 0.30 TCGA-JX-A3Q0-01 1 15684725 15684725 C T FHAD1 Silent p.L107L 0.19 TCGA-JX-A3Q0-01 1 156916478 156916478 C T ARHGEF11 Silent p.E890E 0.18 TCGA-JX-A3Q0-01 1 156927597 156927597 C G ARHGEF11 Missense_Mutation p.E505Q 0.10 deleterious(0) benign(0.242) TCGA-JX-A3Q0-01 1 157551335 157551335 C T FCRL4 Missense_Mutation p.R412H 0.27 tolerated(1) benign(0.001) TCGA-JX-A3Q0-01 1 159505066 159505066 G A OR10J5 Silent p.L244L 0.26 TCGA-JX-A3Q0-01 1 159505654 159505654 G A OR10J5 Silent p.I48I 0.26 TCGA-JX-A3Q0-01 1 160395398 160395398 C T VANGL2 3'UTR 0.30 TCGA-JX-A3Q0-01 1 160397557 160397557 C T VANGL2 3'UTR 0.31 TCGA-JX-A3Q0-01 1 16111165 16111165 G A FBLIM1 3'UTR 0.30 TCGA-JX-A3Q0-01 1 161641179 161641179 C T FCGR2B Intron 0.08 TCGA-JX-A3Q0-01 1 16259513 16259513 G A SPEN Missense_Mutation p.E2260K 0.20 benign(0.046) TCGA-JX-A3Q0-01 1 162749934 162749934 C T DDR2 Silent p.D822D 0.28 TCGA-JX-A3Q0-01 1 16345659 16345659 G A HSPB7 5'Flank 0.19 TCGA-JX-A3Q0-01 1 16475146 16475146 C T EPHA2 Missense_Mutation p.D184N 0.46 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 1 168216382 168216382 C T SFT2D2 3'UTR 0.31 TCGA-JX-A3Q0-01 1 1691201 1691201 C T NADK Missense_Mutation p.R135Q 0.29 tolerated_low_confidence(0.53) benign(0) TCGA-JX-A3Q0-01 1 169770059 169770059 C T C1orf112 Missense_Mutation p.H5Y 0.29 deleterious(0) probably_damaging(0.917) TCGA-JX-A3Q0-01 1 17084305 17084305 C G MST1L RNA 0.05 TCGA-JX-A3Q0-01 1 173839814 173839814 G A ZBTB37 Missense_Mutation p.E151K 0.26 tolerated(0.5) benign(0.007) TCGA-JX-A3Q0-01 1 176525551 176525551 G A PAPPA2 Silent p.K31K 0.32 TCGA-JX-A3Q0-01 1 176998793 176998793 G A ASTN1 Missense_Mutation p.S366L 0.28 tolerated_low_confidence(0.54) benign(0.446) TCGA-JX-A3Q0-01 1 179033476 179033476 G A FAM20B Silent p.K261K 0.23 TCGA-JX-A3Q0-01 1 17975110 17975110 C G ARHGEF10L Missense_Mutation p.F778L 0.20 tolerated(0.67) benign(0.001) TCGA-JX-A3Q0-01 1 181768692 181768692 G A CACNA1E 3'Flank 0.19 TCGA-JX-A3Q0-01 1 183206490 183206490 G T LAMC2 Nonsense_Mutation p.E869* 0.25 TCGA-JX-A3Q0-01 1 183206632 183206632 G A LAMC2 Missense_Mutation p.G916E 0.19 tolerated(1) benign(0.002) TCGA-JX-A3Q0-01 1 183206633 183206633 G A LAMC2 Silent p.G916G 0.19 TCGA-JX-A3Q0-01 1 185135765 185135765 C T SWT1 Missense_Mutation p.S49L 0.21 deleterious_low_confidence(0) benign(0.282) TCGA-JX-A3Q0-01 1 186291529 186291529 C G TPR Missense_Mutation p.D2128H 0.07 possibly_damaging(0.556) TCGA-JX-A3Q0-01 1 192780547 192780547 C T RGS2 Nonsense_Mutation p.Q153* 0.30 TCGA-JX-A3Q0-01 1 19633836 19633836 C T AKR7A2 Silent p.L220L 0.11 TCGA-JX-A3Q0-01 1 197094291 197094291 C T ASPM Nonsense_Mutation p.W989* 0.30 TCGA-JX-A3Q0-01 1 197128956 197128956 G A ZBTB41 Missense_Mutation p.P755S 0.34 tolerated(0.2) benign(0.003) TCGA-JX-A3Q0-01 1 20005617 20005617 C T HTR6 Missense_Mutation p.P360L 0.23 deleterious(0.01) benign(0.069) TCGA-JX-A3Q0-01 1 202985216 202985216 C T TMEM183A Missense_Mutation p.S219F 0.35 tolerated(0.14) benign(0.087) TCGA-JX-A3Q0-01 1 206611435 206611435 G A SRGAP2 Silent p.L499L 0.29 TCGA-JX-A3Q0-01 1 207195713 207195713 G A C1orf116 Missense_Mutation p.L466F 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-JX-A3Q0-01 1 207196772 207196772 C A C1orf116 Nonsense_Mutation p.E113* 0.35 TCGA-JX-A3Q0-01 1 2075954 2075954 C T PRKCZ Intron 0.31 TCGA-JX-A3Q0-01 1 208390910 208390910 C T PLXNA2 Missense_Mutation p.D120N 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-JX-A3Q0-01 1 209799070 209799070 C T LAMB3 Silent p.Q633Q 0.24 TCGA-JX-A3Q0-01 1 20987829 20987829 G A DDOST Silent p.T22T 0.32 TCGA-JX-A3Q0-01 1 209949007 209949007 G C TRAF3IP3 Missense_Mutation p.E327Q 0.26 tolerated(0.14) possibly_damaging(0.469) TCGA-JX-A3Q0-01 1 212799758 212799758 G A FAM71A Nonsense_Mutation p.W513* 0.27 TCGA-JX-A3Q0-01 1 214819778 214819778 C G CENPF Missense_Mutation p.L2289V 0.35 benign(0.124) TCGA-JX-A3Q0-01 1 21503308 21503308 G T EIF4G3 5'UTR 0.42 TCGA-JX-A3Q0-01 1 216678796 216678796 T - ESRRG 3'UTR 0.46 TCGA-JX-A3Q0-01 1 220184323 220184323 G A EPRS Nonsense_Mutation p.Q524* 0.30 TCGA-JX-A3Q0-01 1 22055156 22055156 C G USP48 Missense_Mutation p.E453Q 0.17 deleterious(0.01) possibly_damaging(0.54) TCGA-JX-A3Q0-01 1 221057537 221057537 G A HLX Missense_Mutation p.V320M 0.22 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 1 2235502 2235502 G A SKI Missense_Mutation p.D479N 0.36 tolerated(0.06) possibly_damaging(0.494) TCGA-JX-A3Q0-01 1 226125178 226125178 G A LEFTY2 Missense_Mutation p.S355L 0.12 tolerated(0.24) possibly_damaging(0.564) TCGA-JX-A3Q0-01 1 228247815 228247815 G A WNT3A 3'UTR 0.17 TCGA-JX-A3Q0-01 1 230825835 230825835 G A COG2 Missense_Mutation p.D624N 0.18 tolerated(0.51) benign(0.008) TCGA-JX-A3Q0-01 1 230903363 230903363 G A CAPN9 Missense_Mutation p.E205K 0.29 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 1 231408083 231408083 C T GNPAT Silent p.F516F 0.26 TCGA-JX-A3Q0-01 1 231474190 231474190 G A SPRTN Missense_Mutation p.E21K 0.26 tolerated(0.51) benign(0.003) TCGA-JX-A3Q0-01 1 231501578 231501578 C G EGLN1 3'UTR 0.22 TCGA-JX-A3Q0-01 1 233086397 233086397 G C NTPCR 5'UTR 0.05 TCGA-JX-A3Q0-01 1 234509300 234509300 G C COA6 5'Flank 0.29 TCGA-JX-A3Q0-01 1 235330881 235330881 C T ARID4B 3'UTR 0.21 TCGA-JX-A3Q0-01 1 236925802 236925802 G A ACTN2 Silent p.P856P 0.22 TCGA-JX-A3Q0-01 1 240256841 240256841 G A FMN2 Missense_Mutation p.G478S 0.47 unknown(0) TCGA-JX-A3Q0-01 1 243289744 243289744 G A CEP170 3'UTR 0.30 TCGA-JX-A3Q0-01 1 243303301 243303301 G A CEP170 Nonsense_Mutation p.Q1390* 0.29 TCGA-JX-A3Q0-01 1 245018754 245018754 C G HNRNPU Missense_Mutation p.G775A 0.07 tolerated(0.25) unknown(0) TCGA-JX-A3Q0-01 1 247150191 247150191 C T ZNF695 3'UTR 0.23 TCGA-JX-A3Q0-01 1 248020536 248020536 C G TRIM58 5'UTR 0.24 TCGA-JX-A3Q0-01 1 248366381 248366381 G A OR2M3 Silent p.E4E 0.20 TCGA-JX-A3Q0-01 1 248487754 248487754 G C OR2M7 Missense_Mutation p.F39L 0.29 tolerated(1) benign(0.002) TCGA-JX-A3Q0-01 1 26496564 26496564 G C ZNF593 Missense_Mutation p.E30D 0.36 deleterious(0.02) possibly_damaging(0.724) TCGA-JX-A3Q0-01 1 27089730 27089730 G C ARID1A Missense_Mutation p.E896Q 0.15 unknown(0) TCGA-JX-A3Q0-01 1 29040885 29040885 C T GMEB1 Missense_Mutation p.S441F 0.18 deleterious(0) possibly_damaging(0.692) TCGA-JX-A3Q0-01 1 32669565 32669565 G A CCDC28B Missense_Mutation p.E84K 0.27 deleterious(0) benign(0.009) TCGA-JX-A3Q0-01 1 33490087 33490087 C T AK2 Missense_Mutation p.E59K 0.21 tolerated(0.31) benign(0.008) TCGA-JX-A3Q0-01 1 33490112 33490112 C G AK2 Silent p.L50L 0.27 TCGA-JX-A3Q0-01 1 34684424 34684424 G A C1orf94 3'UTR 0.26 TCGA-JX-A3Q0-01 1 36028072 36028072 C T NCDN Missense_Mutation p.S408L 0.30 tolerated(0.07) benign(0.334) TCGA-JX-A3Q0-01 1 36226099 36226099 C T CLSPN Missense_Mutation p.E475K 0.22 tolerated(0.89) benign(0.001) TCGA-JX-A3Q0-01 1 36521779 36521779 C G AGO3 3'UTR 0.18 TCGA-JX-A3Q0-01 1 3751620 3751620 C A CEP104 Nonsense_Mutation p.E452* 0.20 TCGA-JX-A3Q0-01 1 38148726 38148726 G C C1orf109 3'UTR 0.21 TCGA-JX-A3Q0-01 1 38158203 38158203 C T CDCA8 5'UTR 0.29 TCGA-JX-A3Q0-01 1 38444671 38444671 C G SF3A3 Missense_Mutation p.L272F 0.14 deleterious(0) probably_damaging(0.941) TCGA-JX-A3Q0-01 1 39893651 39893651 G A MACF1 Missense_Mutation p.E3437K 0.25 possibly_damaging(0.867) TCGA-JX-A3Q0-01 1 40235401 40235401 G C OXCT2 Silent p.L509L 0.17 TCGA-JX-A3Q0-01 1 43649515 43649515 C T WDR65 Missense_Mutation p.S243L 0.22 tolerated(0.39) benign(0.005) TCGA-JX-A3Q0-01 1 43782884 43782884 C A TIE1 Silent p.I808I 0.39 TCGA-JX-A3Q0-01 1 43783067 43783067 C T TIE1 Silent p.I869I 0.35 TCGA-JX-A3Q0-01 1 43783244 43783244 C G TIE1 Missense_Mutation p.S877C 0.24 deleterious(0) probably_damaging(0.968) TCGA-JX-A3Q0-01 1 44443341 44443341 C T ATP6V0B Intron 0.25 TCGA-JX-A3Q0-01 1 44818566 44818566 G A ERI3 Missense_Mutation p.S56L 0.25 tolerated_low_confidence(0.15) benign(0.002) TCGA-JX-A3Q0-01 1 46211870 46211870 C T IPP Missense_Mutation p.E72K 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-JX-A3Q0-01 1 48937675 48937675 C A SPATA6 Silent p.P2P 0.30 TCGA-JX-A3Q0-01 1 50659540 50659540 C T ELAVL4 Missense_Mutation p.S170L 0.27 deleterious(0.02) benign(0.178) TCGA-JX-A3Q0-01 1 52499064 52499064 C T KTI12 Missense_Mutation p.E124K 0.30 deleterious_low_confidence(0.02) benign(0.028) TCGA-JX-A3Q0-01 1 52867049 52867049 C G ORC1 Missense_Mutation p.E70Q 0.08 tolerated(0.1) probably_damaging(0.944) TCGA-JX-A3Q0-01 1 53222190 53222190 G C ZYG11B Missense_Mutation p.E31Q 0.33 deleterious(0.03) probably_damaging(0.986) TCGA-JX-A3Q0-01 1 53279239 53279239 C T ZYG11B Missense_Mutation p.S576F 0.16 tolerated(0.22) benign(0.01) TCGA-JX-A3Q0-01 1 53712299 53712299 C G LRP8 3'UTR 0.24 TCGA-JX-A3Q0-01 1 56989993 56989993 C G PPAP2B Missense_Mutation p.Q177H 0.27 tolerated(0.06) possibly_damaging(0.482) TCGA-JX-A3Q0-01 1 6211203 6211203 C T CHD5 Missense_Mutation p.E295K 0.25 tolerated(0.36) benign(0.044) TCGA-JX-A3Q0-01 1 63329772 63329772 C T ATG4C Missense_Mutation p.S440L 0.31 tolerated(0.72) benign(0.002) TCGA-JX-A3Q0-01 1 65142651 65142651 C T CACHD1 Missense_Mutation p.H966Y 0.12 tolerated(0.1) benign(0.01) TCGA-JX-A3Q0-01 1 67452988 67452988 G A MIER1 3'Flank 0.19 TCGA-JX-A3Q0-01 1 7840096 7840097 - A VAMP3 3'UTR 0.13 TCGA-JX-A3Q0-01 1 85575787 85575787 G C WDR63 Silent p.L585L 0.08 TCGA-JX-A3Q0-01 1 86313364 86313364 C T COL24A1 Missense_Mutation p.G1149E 0.11 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 1 911633 911633 G A C1orf170 Silent p.V670V 0.29 TCGA-JX-A3Q0-01 1 911980 911980 G A C1orf170 Missense_Mutation p.S631L 0.26 deleterious(0.01) possibly_damaging(0.611) TCGA-JX-A3Q0-01 1 9211750 9211750 C G MIR34A RNA 0.26 TCGA-JX-A3Q0-01 1 97544576 97544576 C A DPYD Nonsense_Mutation p.E1012* 0.28 TCGA-JX-A3Q0-01 1 9784991 9784991 C T PIK3CD Silent p.L998L 0.11 TCGA-JX-A3Q0-01 20 14305615 14305615 G C FLRT3 3'UTR 0.31 TCGA-JX-A3Q0-01 20 1434905 1434905 C T NSFL1C Missense_Mutation p.E166K 0.17 tolerated(0.48) benign(0.192) TCGA-JX-A3Q0-01 20 1434911 1434911 C T NSFL1C Missense_Mutation p.E164K 0.17 tolerated(0.57) possibly_damaging(0.517) TCGA-JX-A3Q0-01 20 20491928 20491928 C G RALGAPA2 Missense_Mutation p.R1633T 0.27 deleterious(0) probably_damaging(0.998) TCGA-JX-A3Q0-01 20 2315878 2315878 G A TGM3 Missense_Mutation p.E587K 0.27 deleterious(0.04) benign(0.039) TCGA-JX-A3Q0-01 20 2841412 2841412 C G VPS16 Missense_Mutation p.S178C 0.26 deleterious(0) probably_damaging(0.983) TCGA-JX-A3Q0-01 20 30432107 30432107 C T FOXS1 3'UTR 0.31 TCGA-JX-A3Q0-01 20 30526994 30526994 G A TTLL9 Missense_Mutation p.D390N 0.25 tolerated(0.47) benign(0.109) TCGA-JX-A3Q0-01 20 30918001 30918001 G A KIF3B Missense_Mutation p.E676K 0.20 deleterious(0.05) benign(0.094) TCGA-JX-A3Q0-01 20 31573640 31573640 G A SUN5 Nonsense_Mutation p.Q267* 0.27 TCGA-JX-A3Q0-01 20 33460525 33460525 C T GGT7 Missense_Mutation p.E32K 0.48 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-JX-A3Q0-01 20 34022687 34022687 C G GDF5OS Missense_Mutation p.S244C 0.19 deleterious_low_confidence(0) benign(0.009) TCGA-JX-A3Q0-01 20 34116929 34116929 C G C20orf173 Missense_Mutation p.E92Q 0.28 deleterious(0.03) probably_damaging(0.964) TCGA-JX-A3Q0-01 20 35661206 35661206 C A RBL1 Missense_Mutation p.K748N 0.30 tolerated(0.44) benign(0.033) TCGA-JX-A3Q0-01 20 35689590 35689590 G A RBL1 Missense_Mutation p.S389L 0.40 tolerated(0.1) possibly_damaging(0.46) TCGA-JX-A3Q0-01 20 36856603 36856603 G A KIAA1755 Silent p.D637D 0.25 TCGA-JX-A3Q0-01 20 37378768 37378768 G A ACTR5 Missense_Mutation p.G164E 0.34 deleterious(0) probably_damaging(0.979) TCGA-JX-A3Q0-01 20 37581245 37581245 C T FAM83D 3'UTR 0.35 TCGA-JX-A3Q0-01 20 40034123 40034123 G A CHD6 Missense_Mutation p.L2420F 0.26 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 20 42213726 42213726 G A SGK2 3'UTR 0.36 TCGA-JX-A3Q0-01 20 45003955 45003955 C G ELMO2 Missense_Mutation p.D329H 0.30 deleterious(0.02) possibly_damaging(0.778) TCGA-JX-A3Q0-01 20 47591314 47591314 G A ARFGEF2 Silent p.L559L 0.25 TCGA-JX-A3Q0-01 20 4764982 4764982 G A RASSF2 Silent p.T306T 0.26 TCGA-JX-A3Q0-01 20 47689161 47689161 G A CSE1L Silent p.K331K 0.22 TCGA-JX-A3Q0-01 20 50158912 50158912 C T NFATC2 Missense_Mutation p.E43K 0.14 tolerated(0.29) benign(0.229) TCGA-JX-A3Q0-01 20 55100944 55100944 G T FAM209A Missense_Mutation p.A112S 0.32 tolerated(0.05) benign(0.037) TCGA-JX-A3Q0-01 20 57611811 57611811 G A SLMO2 Missense_Mutation p.S99L 0.08 tolerated(0.05) benign(0.151) TCGA-JX-A3Q0-01 20 60790430 60790430 C T HRH3 3'UTR 0.23 TCGA-JX-A3Q0-01 20 60790436 60790436 C T HRH3 3'UTR 0.23 TCGA-JX-A3Q0-01 20 60791269 60791269 C G HRH3 Silent p.L377L 0.22 TCGA-JX-A3Q0-01 20 60794892 60794892 G A HRH3 Silent p.I45I 0.32 TCGA-JX-A3Q0-01 20 61460830 61460830 C T COL9A3 Silent p.S344S 0.29 TCGA-JX-A3Q0-01 20 62370085 62370085 C G LIME1 Silent p.L240L 0.11 TCGA-JX-A3Q0-01 20 62377440 62377440 G C ZBTB46 3'UTR 0.29 TCGA-JX-A3Q0-01 21 15517001 15517001 G A LIPI Missense_Mutation p.S434F 0.46 tolerated(0.1) benign(0.009) TCGA-JX-A3Q0-01 21 15870772 15870772 C T SAMSN1 Missense_Mutation p.E372K 0.07 deleterious(0.01) benign(0.06) TCGA-JX-A3Q0-01 21 19933965 19933965 C T AL109763.2 RNA 0.31 TCGA-JX-A3Q0-01 21 30927573 30927573 C T GRIK1 Missense_Mutation p.E803K 0.33 tolerated(0.63) possibly_damaging(0.451) TCGA-JX-A3Q0-01 21 34967797 34967797 G C CRYZL1 Intron 0.37 TCGA-JX-A3Q0-01 21 37605362 37605362 G A DOPEY2 Missense_Mutation p.D871N 0.31 tolerated(0.13) probably_damaging(0.947) TCGA-JX-A3Q0-01 21 38390286 38390286 G A RIPPLY3 Missense_Mutation p.E118K 0.43 deleterious(0.03) benign(0.139) TCGA-JX-A3Q0-01 21 40608645 40608645 C G BRWD1 Missense_Mutation p.R881T 0.59 deleterious(0.01) probably_damaging(0.977) TCGA-JX-A3Q0-01 21 43412056 43412056 C G ZBTB21 Missense_Mutation p.E717Q 0.22 tolerated(0.53) benign(0.014) TCGA-JX-A3Q0-01 21 43412124 43412124 C G ZBTB21 Missense_Mutation p.G694A 0.17 tolerated(0.51) benign(0.194) TCGA-JX-A3Q0-01 21 43766557 43766557 G C TFF2 3'UTR 0.11 TCGA-JX-A3Q0-01 21 44185528 44185528 G T PDE9A Missense_Mutation p.R427I 0.30 deleterious(0) benign(0.37) TCGA-JX-A3Q0-01 21 44590668 44590668 G A CRYAA Silent p.V77V 0.10 TCGA-JX-A3Q0-01 21 45815323 45815323 C T TRPM2 Silent p.L607L 0.40 TCGA-JX-A3Q0-01 21 45960073 45960073 G A KRTAP10-1 5'UTR 0.30 TCGA-JX-A3Q0-01 21 46032136 46032136 C T KRTAP10-8 Missense_Mutation p.S40F 0.36 deleterious(0) probably_damaging(0.951) TCGA-JX-A3Q0-01 22 16287817 16287817 C T POTEH Silent p.K23K 0.31 TCGA-JX-A3Q0-01 22 18835217 18835217 C T AC008132.13 Missense_Mutation p.S258L 0.05 deleterious(0) benign(0.013) TCGA-JX-A3Q0-01 22 18845900 18845900 G A BCRP7 Intron 0.07 TCGA-JX-A3Q0-01 22 21075635 21075635 C T PI4KA Nonsense_Mutation p.W1689* 0.42 TCGA-JX-A3Q0-01 22 21354707 21354707 C T THAP7 Missense_Mutation p.R131Q 0.54 tolerated(0.69) benign(0) TCGA-JX-A3Q0-01 22 23465877 23465877 G C GNAZ 3'UTR 0.26 TCGA-JX-A3Q0-01 22 23466472 23466472 G A RTDR1 Intron 0.37 TCGA-JX-A3Q0-01 22 24659537 24659537 G A POM121L9P RNA 0.04 TCGA-JX-A3Q0-01 22 29446745 29446745 G A ZNRF3 Missense_Mutation p.R859Q 0.23 tolerated_low_confidence(0.57) benign(0.002) TCGA-JX-A3Q0-01 22 29536304 29536304 C T KREMEN1 Silent p.I403I 0.37 TCGA-JX-A3Q0-01 22 35659852 35659852 G A HMGXB4 Missense_Mutation p.D82N 0.48 tolerated(0.14) benign(0.223) TCGA-JX-A3Q0-01 22 36717842 36717842 C T MYH9 Missense_Mutation p.D244N 0.31 benign(0.06) TCGA-JX-A3Q0-01 22 37891921 37891921 C T CARD10 Missense_Mutation p.E717K 0.31 tolerated(0.15) benign(0.142) TCGA-JX-A3Q0-01 22 39497920 39497920 C T APOBEC3H Intron 0.22 TCGA-JX-A3Q0-01 22 41222146 41222146 C T ST13 3'UTR 0.27 TCGA-JX-A3Q0-01 22 41523536 41523536 C G EP300 Missense_Mutation p.P318A 0.26 unknown(0) TCGA-JX-A3Q0-01 22 41543930 41543930 C T EP300 Nonsense_Mutation p.Q741* 0.24 TCGA-JX-A3Q0-01 22 41574469 41574469 G T EP300 Nonsense_Mutation p.E2252* 0.50 TCGA-JX-A3Q0-01 22 42423091 42423091 G A WBP2NL Missense_Mutation p.G279E 0.42 tolerated_low_confidence(0.29) probably_damaging(0.931) TCGA-JX-A3Q0-01 22 45802415 45802415 C T SMC1B Missense_Mutation p.D181N 0.37 deleterious(0.03) benign(0.422) TCGA-JX-A3Q0-01 22 45802438 45802438 C G SMC1B Missense_Mutation p.R173T 0.39 tolerated(0.33) benign(0.131) TCGA-JX-A3Q0-01 22 48940610 48940610 G A CTA-299D3.8 Missense_Mutation p.R67C 0.27 possibly_damaging(0.833) TCGA-JX-A3Q0-01 22 49290785 49290785 G A WI2-81516E3.1 RNA 0.35 TCGA-JX-A3Q0-01 22 50962089 50962089 G T SCO2 Nonsense_Mutation p.S251* 0.40 TCGA-JX-A3Q0-01 2 100040681 100040681 G A REV1 Nonsense_Mutation p.Q537* 0.31 TCGA-JX-A3Q0-01 2 109109062 109109062 G A GCC2 Missense_Mutation p.M1421I 0.16 tolerated(0.09) benign(0.009) TCGA-JX-A3Q0-01 2 109116054 109116054 G A GCC2 Missense_Mutation p.E1610K 0.14 deleterious(0) probably_damaging(0.985) TCGA-JX-A3Q0-01 2 109116126 109116126 G A GCC2 Missense_Mutation p.E1634K 0.13 deleterious(0) probably_damaging(0.996) TCGA-JX-A3Q0-01 2 11053024 11053024 G A KCNF1 Missense_Mutation p.E158K 0.16 tolerated(0.6) benign(0.036) TCGA-JX-A3Q0-01 2 113763630 113763630 C T IL36A Silent p.L30L 0.31 TCGA-JX-A3Q0-01 2 114400548 114400548 C T RABL2A 3'UTR 0.57 TCGA-JX-A3Q0-01 2 116520164 116520164 C T DPP10 Missense_Mutation p.S368L 0.06 deleterious(0.02) possibly_damaging(0.499) TCGA-JX-A3Q0-01 2 116600686 116600686 G A DPP10 3'Flank 0.40 TCGA-JX-A3Q0-01 2 129025676 129025676 C A HS6ST1 3'UTR 0.40 TCGA-JX-A3Q0-01 2 131524903 131524903 G A AMER3 3'UTR 0.29 TCGA-JX-A3Q0-01 2 138414429 138414429 G A THSD7B Missense_Mutation p.R1393K 0.19 tolerated(0.1) unknown(0) TCGA-JX-A3Q0-01 2 141773399 141773399 G A LRP1B Missense_Mutation p.R686W 0.70 possibly_damaging(0.898) TCGA-JX-A3Q0-01 2 1440117 1440117 C T TPO Missense_Mutation p.A148V 0.38 deleterious(0.04) benign(0.059) TCGA-JX-A3Q0-01 2 1491622 1491622 C T TPO Missense_Mutation p.L543F 0.33 deleterious(0.03) possibly_damaging(0.838) TCGA-JX-A3Q0-01 2 152273185 152273185 G A RIF1 Missense_Mutation p.E131K 0.32 deleterious(0.01) possibly_damaging(0.484) TCGA-JX-A3Q0-01 2 164468163 164468163 G A FIGN Missense_Mutation p.S60F 0.24 deleterious(0) probably_damaging(0.979) TCGA-JX-A3Q0-01 2 165586569 165586569 G C COBLL1 Nonsense_Mutation p.S96* 0.34 TCGA-JX-A3Q0-01 2 166848682 166848682 G C SCN1A Missense_Mutation p.I1701M 0.31 deleterious(0.01) probably_damaging(0.911) TCGA-JX-A3Q0-01 2 168098385 168098385 G A XIRP2 Missense_Mutation p.D381N 0.16 probably_damaging(0.913) TCGA-JX-A3Q0-01 2 170127601 170127601 G A LRP2 Silent p.L711L 0.35 TCGA-JX-A3Q0-01 2 170863551 170863551 C T UBR3 Missense_Mutation p.P1361S 0.45 deleterious(0) probably_damaging(0.998) TCGA-JX-A3Q0-01 2 173881101 173881101 G A RAPGEF4 Missense_Mutation p.D612N 0.37 deleterious(0.04) possibly_damaging(0.548) TCGA-JX-A3Q0-01 2 177033965 177033965 C T HOXD3 Silent p.Y41Y 0.33 TCGA-JX-A3Q0-01 2 178098960 178098960 C A NFE2L2 Missense_Mutation p.D29Y 0.37 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 2 179507006 179507006 C T TTN Missense_Mutation p.E13506K 0.25 TCGA-JX-A3Q0-01 2 179542513 179542513 C T TTN Missense_Mutation p.E11376K 0.38 TCGA-JX-A3Q0-01 2 189862095 189862095 C T COL3A1 Nonsense_Mutation p.Q617* 0.45 TCGA-JX-A3Q0-01 2 191375108 191375108 G C TMEM194B Missense_Mutation p.S370C 0.42 deleterious(0.04) possibly_damaging(0.65) TCGA-JX-A3Q0-01 2 191827634 191827634 C G GLS Silent p.V644V 0.33 TCGA-JX-A3Q0-01 2 192246290 192246290 G A MYO1B Missense_Mutation p.E430K 0.46 deleterious(0) probably_damaging(0.998) TCGA-JX-A3Q0-01 2 19553095 19553095 G C OSR1 Missense_Mutation p.P158A 0.46 deleterious(0.03) benign(0.027) TCGA-JX-A3Q0-01 2 19553114 19553114 G C OSR1 Silent p.L151L 0.47 TCGA-JX-A3Q0-01 2 201775939 201775939 C G ORC2 3'UTR 0.36 TCGA-JX-A3Q0-01 2 202622381 202622381 C T ALS2 Silent p.V405V 0.27 TCGA-JX-A3Q0-01 2 203748918 203748918 C T WDR12 Intron 0.36 TCGA-JX-A3Q0-01 2 204292536 204292536 G A ABI2 3'UTR 0.44 TCGA-JX-A3Q0-01 2 207413014 207413014 G T ADAM23 Missense_Mutation p.R268I 0.41 tolerated(0.17) benign(0.001) TCGA-JX-A3Q0-01 2 207988784 207988784 G C KLF7 Silent p.V149V 0.06 TCGA-JX-A3Q0-01 2 21001202 21001202 C T C2orf43 Missense_Mutation p.E8K 0.21 tolerated(0.14) benign(0.15) TCGA-JX-A3Q0-01 2 210885203 210885203 C T RPE 3'UTR 0.44 TCGA-JX-A3Q0-01 2 21260896 21260896 C T APOB Silent p.K157K 0.46 TCGA-JX-A3Q0-01 2 215802306 215802306 C T ABCA12 Silent p.L2490L 0.27 TCGA-JX-A3Q0-01 2 215815720 215815720 C G ABCA12 Missense_Mutation p.E2245D 0.06 tolerated(0.36) benign(0.225) TCGA-JX-A3Q0-01 2 219679763 219679763 C G CYP27A1 3'UTR 0.41 TCGA-JX-A3Q0-01 2 219826192 219826192 C T CDK5R2 3'UTR 0.33 TCGA-JX-A3Q0-01 2 220172265 220172265 G A PTPRN Nonsense_Mutation p.Q61* 0.39 TCGA-JX-A3Q0-01 2 226378118 226378118 G A NYAP2 Missense_Mutation p.G85R 0.48 tolerated(0.27) possibly_damaging(0.602) TCGA-JX-A3Q0-01 2 239074300 239074300 C G FAM132B Missense_Mutation p.S314C 0.41 tolerated(0.08) benign(0.311) TCGA-JX-A3Q0-01 2 239161691 239161691 G A PER2 Silent p.L991L 0.51 TCGA-JX-A3Q0-01 2 241696839 241696839 C T KIF1A Missense_Mutation p.E919K 0.50 tolerated(0.31) benign(0.371) TCGA-JX-A3Q0-01 2 242007304 242007304 G A SNED1 Missense_Mutation p.E1046K 0.41 tolerated(0.21) benign(0.05) TCGA-JX-A3Q0-01 2 242089105 242089105 C T PPP1R7 5'Flank 0.47 TCGA-JX-A3Q0-01 2 25966982 25966982 C T ASXL2 Missense_Mutation p.E742K 0.16 tolerated_low_confidence(0.06) benign(0.387) TCGA-JX-A3Q0-01 2 25972969 25972969 C T ASXL2 Missense_Mutation p.E486K 0.08 tolerated(0.2) possibly_damaging(0.576) TCGA-JX-A3Q0-01 2 27293571 27293571 C T OST4 3'UTR 0.50 TCGA-JX-A3Q0-01 2 27684268 27684268 G A IFT172 Silent p.I770I 0.25 TCGA-JX-A3Q0-01 2 29249789 29249789 G A FAM179A Missense_Mutation p.E642K 0.31 tolerated(0.09) benign(0.139) TCGA-JX-A3Q0-01 2 32693008 32693008 G A BIRC6 Missense_Mutation p.R1870K 0.69 probably_damaging(0.952) TCGA-JX-A3Q0-01 2 37035659 37035659 C T VIT Silent p.S478S 0.12 TCGA-JX-A3Q0-01 2 40341637 40341637 G A SLC8A1 3'Flank 0.35 TCGA-JX-A3Q0-01 2 44981214 44981214 G A CAMKMT Missense_Mutation p.R240K 0.44 deleterious(0.01) benign(0.15) TCGA-JX-A3Q0-01 2 45169636 45169636 C T SIX3 Silent p.I131I 0.39 TCGA-JX-A3Q0-01 2 55130535 55130535 C T EML6 Missense_Mutation p.S1102F 0.39 deleterious(0) probably_damaging(0.996) TCGA-JX-A3Q0-01 2 55776737 55776737 C T SMEK2 3'UTR 0.16 TCGA-JX-A3Q0-01 2 55776742 55776742 C T SMEK2 3'UTR 0.15 TCGA-JX-A3Q0-01 2 55842596 55842596 C T SMEK2 Silent p.Q63Q 0.49 TCGA-JX-A3Q0-01 2 61108970 61108970 G A REL 5'UTR 0.34 TCGA-JX-A3Q0-01 2 66664989 66664989 C T MEIS1 Silent p.L45L 0.50 TCGA-JX-A3Q0-01 2 69757802 69757802 G A AAK1 Silent p.V231V 0.26 TCGA-JX-A3Q0-01 2 70485306 70485306 G A PCYOX1 Missense_Mutation p.V4I 0.26 tolerated_low_confidence(0.3) benign(0) TCGA-JX-A3Q0-01 2 70485372 70485372 G A PCYOX1 Missense_Mutation p.E26K 0.36 tolerated(0.5) benign(0) TCGA-JX-A3Q0-01 2 74756717 74756717 C G AUP1 Missense_Mutation p.D14H 0.41 tolerated(0.14) possibly_damaging(0.551) TCGA-JX-A3Q0-01 2 75891851 75891851 C T GCFC2 Missense_Mutation p.E763K 0.24 tolerated(0.12) benign(0.051) TCGA-JX-A3Q0-01 2 85770819 85770819 A C MAT2A Missense_Mutation p.Y371S 0.34 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 2 88047697 88047697 C T PLGLB2 Silent p.L9L 0.12 TCGA-JX-A3Q0-01 2 96803369 96803369 G C ASTL Silent p.L42L 0.40 TCGA-JX-A3Q0-01 3 10157374 10157374 C T BRK1 5'UTR 0.21 TCGA-JX-A3Q0-01 3 108572683 108572683 C G TRAT1 Missense_Mutation p.L174V 0.30 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 3 111688552 111688552 C T PHLDB2 Missense_Mutation p.R1111C 0.43 deleterious(0.03) possibly_damaging(0.835) TCGA-JX-A3Q0-01 3 111700728 111700728 C T ABHD10 Silent p.F80F 0.23 TCGA-JX-A3Q0-01 3 112301776 112301776 G A SLC35A5 3'UTR 0.45 TCGA-JX-A3Q0-01 3 113176079 113176079 G C SPICE1 Missense_Mutation p.L521V 0.31 tolerated(0.83) benign(0.057) TCGA-JX-A3Q0-01 3 113187197 113187197 G A SPICE1 Missense_Mutation p.S315L 0.31 tolerated(0.8) possibly_damaging(0.53) TCGA-JX-A3Q0-01 3 113955149 113955149 G A ZNF80 Missense_Mutation p.S258F 0.27 deleterious(0.02) benign(0.062) TCGA-JX-A3Q0-01 3 118621521 118621521 G A IGSF11 Missense_Mutation p.S381L 0.25 deleterious(0.02) benign(0.005) TCGA-JX-A3Q0-01 3 122354899 122354899 C T PARP15 Silent p.F663F 0.05 TCGA-JX-A3Q0-01 3 123512602 123512602 C T MYLK Silent p.L29L 0.29 TCGA-JX-A3Q0-01 3 124303610 124303610 C T KALRN 5'UTR 0.31 TCGA-JX-A3Q0-01 3 127396598 127396598 C T ABTB1 Missense_Mutation p.S314L 0.28 tolerated(0.2) benign(0.003) TCGA-JX-A3Q0-01 3 128888848 128888848 G C CNBP 3'Flank 0.18 TCGA-JX-A3Q0-01 3 129007710 129007710 C T HMCES Missense_Mutation p.S66F 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-JX-A3Q0-01 3 129007720 129007720 C T HMCES Silent p.I69I 0.29 TCGA-JX-A3Q0-01 3 129200465 129200465 G C IFT122 Missense_Mutation p.K578N 0.23 tolerated(0.84) benign(0.001) TCGA-JX-A3Q0-01 3 130712795 130712795 C T ATP2C1 Missense_Mutation p.S671L 0.21 tolerated(0.68) benign(0) TCGA-JX-A3Q0-01 3 134670464 134670464 G T EPHB1 Missense_Mutation p.K125N 0.25 tolerated(0.56) benign(0.002) TCGA-JX-A3Q0-01 3 138383904 138383904 C T PIK3CB Silent p.L882L 0.21 TCGA-JX-A3Q0-01 3 140277660 140277660 T G CLSTN2 Missense_Mutation p.F668V 0.08 tolerated(0.76) benign(0) TCGA-JX-A3Q0-01 3 142090088 142090088 C G XRN1 Missense_Mutation p.E1021Q 0.09 tolerated(0.23) benign(0.097) TCGA-JX-A3Q0-01 3 142178163 142178163 C T ATR Missense_Mutation p.E2419K 0.26 tolerated(0.28) probably_damaging(0.999) TCGA-JX-A3Q0-01 3 142184050 142184050 C G ATR Missense_Mutation p.K2310N 0.19 deleterious(0) probably_damaging(0.998) TCGA-JX-A3Q0-01 3 142984758 142984758 G C SLC9A9 3'UTR 0.31 TCGA-JX-A3Q0-01 3 146239403 146239403 C T PLSCR1 Silent p.E222E 0.20 TCGA-JX-A3Q0-01 3 150931786 150931786 C T P2RY14 Missense_Mutation p.V107I 0.31 tolerated(0.93) benign(0.144) TCGA-JX-A3Q0-01 3 15118624 15118624 G A ZFYVE20 Missense_Mutation p.P349L 0.23 deleterious(0.01) benign(0.027) TCGA-JX-A3Q0-01 3 154006737 154006737 C T DHX36 Missense_Mutation p.G650E 0.22 tolerated(0.71) benign(0.01) TCGA-JX-A3Q0-01 3 155200421 155200421 C T PLCH1 Missense_Mutation p.G1140S 0.25 tolerated_low_confidence(0.57) benign(0.097) TCGA-JX-A3Q0-01 3 155203219 155203219 C T PLCH1 Missense_Mutation p.R975K 0.13 tolerated_low_confidence(1) benign(0.002) TCGA-JX-A3Q0-01 3 156697069 156697069 G A KLF3P2 3'Flank 0.32 TCGA-JX-A3Q0-01 3 164904736 164904736 G A SLITRK3 3'UTR 0.08 TCGA-JX-A3Q0-01 3 167621185 167621185 C T RP11-298O21.5 RNA 0.15 TCGA-JX-A3Q0-01 3 170079154 170079154 G A SKIL Silent p.K345K 0.55 TCGA-JX-A3Q0-01 3 172229441 172229441 C G TNFSF10 Missense_Mutation p.L93F 0.35 tolerated(0.49) possibly_damaging(0.873) TCGA-JX-A3Q0-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-JX-A3Q0-01 3 183479893 183479893 C G YEATS2 Missense_Mutation p.I591M 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 3 183956658 183956658 C G VWA5B2 Missense_Mutation p.F733L 0.10 tolerated(0.66) benign(0.001) TCGA-JX-A3Q0-01 3 18427918 18427918 G C SATB1 Missense_Mutation p.I464M 0.24 tolerated(0.08) possibly_damaging(0.774) TCGA-JX-A3Q0-01 3 186006655 186006655 C T DGKG Missense_Mutation p.E130K 0.22 tolerated(0.25) benign(0.001) TCGA-JX-A3Q0-01 3 186456902 186456902 G A KNG1 Silent p.K315K 0.33 TCGA-JX-A3Q0-01 3 190126100 190126100 C T CLDN16 Intron 0.15 TCGA-JX-A3Q0-01 3 190338211 190338211 C G IL1RAP Missense_Mutation p.L229V 0.08 tolerated(0.51) benign(0.001) TCGA-JX-A3Q0-01 3 192516720 192516720 G A MB21D2 Nonsense_Mutation p.Q311* 0.28 TCGA-JX-A3Q0-01 3 193081033 193081033 C G ATP13A5 Missense_Mutation p.E126Q 0.27 tolerated(0.46) benign(0.097) TCGA-JX-A3Q0-01 3 194062052 194062052 G C CPN2 Missense_Mutation p.D460E 0.20 tolerated(1) benign(0.007) TCGA-JX-A3Q0-01 3 195505972 195505972 G C MUC4 Missense_Mutation p.S4160C 0.31 unknown(0) TCGA-JX-A3Q0-01 3 195513669 195513669 G C MUC4 Silent p.S1594S 0.29 TCGA-JX-A3Q0-01 3 196044975 196044975 C T TCTEX1D2 Missense_Mutation p.E17K 0.37 tolerated(0.05) benign(0.086) TCGA-JX-A3Q0-01 3 197023292 197023292 C T DLG1 Missense_Mutation p.E26K 0.10 tolerated(0.12) benign(0.272) TCGA-JX-A3Q0-01 3 197349125 197349125 G A AC024560.3 RNA 0.13 TCGA-JX-A3Q0-01 3 197426070 197426070 C T KIAA0226 Intron 0.11 TCGA-JX-A3Q0-01 3 197701344 197701344 G C LMLN Missense_Mutation p.E106Q 0.31 tolerated(0.31) benign(0.036) TCGA-JX-A3Q0-01 3 37785523 37785523 C T ITGA9 Nonsense_Mutation p.Q811* 0.23 TCGA-JX-A3Q0-01 3 38645227 38645227 C T SCN5A Silent p.V622V 0.10 TCGA-JX-A3Q0-01 3 39374122 39374122 G A CCR8 Silent p.V100V 0.15 TCGA-JX-A3Q0-01 3 40503459 40503459 G A RPL14 Silent p.K128K 0.37 TCGA-JX-A3Q0-01 3 42662975 42662975 G A NKTR Missense_Mutation p.R114Q 0.22 deleterious_low_confidence(0) unknown(0) TCGA-JX-A3Q0-01 3 44685487 44685487 G A ZNF197 Silent p.E955E 0.22 TCGA-JX-A3Q0-01 3 45637450 45637450 C T LIMD1 Missense_Mutation p.S360L 0.32 tolerated(0.38) benign(0.001) TCGA-JX-A3Q0-01 3 45751043 45751043 T C SACM1L Silent p.D129D 0.25 TCGA-JX-A3Q0-01 3 4776957 4776957 G A ITPR1 Missense_Mutation p.M1806I 0.29 tolerated(0.71) benign(0.124) TCGA-JX-A3Q0-01 3 48224493 48224493 G C CDC25A Missense_Mutation p.L119V 0.28 deleterious(0.01) probably_damaging(0.988) TCGA-JX-A3Q0-01 3 48224499 48224499 G A CDC25A Missense_Mutation p.P117S 0.28 deleterious(0.01) possibly_damaging(0.856) TCGA-JX-A3Q0-01 3 48459641 48459641 C T PLXNB1 Missense_Mutation p.E1061K 0.24 tolerated(0.11) benign(0.195) TCGA-JX-A3Q0-01 3 48506952 48506952 G A ATRIP Silent p.%3D 0.20 TCGA-JX-A3Q0-01 3 48602852 48602852 C G COL7A1 Missense_Mutation p.E2840Q 0.30 possibly_damaging(0.777) TCGA-JX-A3Q0-01 3 48701446 48701446 G A CELSR3 5'Flank 0.23 TCGA-JX-A3Q0-01 3 48711829 48711829 C G NCKIPSD 3'UTR 0.10 TCGA-JX-A3Q0-01 3 4887837 4887837 G C ITPR1 Missense_Mutation p.R2720S 0.40 deleterious(0) benign(0.271) TCGA-JX-A3Q0-01 3 49050363 49050363 G C WDR6 Missense_Mutation p.E496Q 0.14 deleterious(0.04) possibly_damaging(0.785) TCGA-JX-A3Q0-01 3 49161197 49161197 G A LAMB2 Missense_Mutation p.S1254F 0.16 deleterious(0.01) benign(0.009) TCGA-JX-A3Q0-01 3 49162313 49162313 G C LAMB2 Nonsense_Mutation p.S977* 0.21 TCGA-JX-A3Q0-01 3 49162772 49162772 G A LAMB2 Silent p.V878V 0.15 TCGA-JX-A3Q0-01 3 49163434 49163434 G A LAMB2 Silent p.I770I 0.22 TCGA-JX-A3Q0-01 3 49166205 49166205 G A LAMB2 Silent p.S593S 0.16 TCGA-JX-A3Q0-01 3 49166206 49166206 G T LAMB2 Missense_Mutation p.S593Y 0.15 deleterious(0) possibly_damaging(0.498) TCGA-JX-A3Q0-01 3 49689000 49689000 C T BSN Nonsense_Mutation p.Q671* 0.29 TCGA-JX-A3Q0-01 3 50396484 50396484 G A TMEM115 Missense_Mutation p.A4V 0.44 tolerated(0.32) benign(0.003) TCGA-JX-A3Q0-01 3 52549479 52549479 C G STAB1 Missense_Mutation p.S1302C 0.33 deleterious(0.03) possibly_damaging(0.687) TCGA-JX-A3Q0-01 3 57130323 57130323 G A IL17RD 3'UTR 0.14 TCGA-JX-A3Q0-01 3 58135868 58135868 G A FLNB Missense_Mutation p.R2125K 0.27 tolerated(0.1) probably_damaging(0.995) TCGA-JX-A3Q0-01 3 62357774 62357774 C T FEZF2 Missense_Mutation p.G257E 0.05 tolerated(1) benign(0.005) TCGA-JX-A3Q0-01 3 62860926 62860926 G A CADPS 5'UTR 0.33 TCGA-JX-A3Q0-01 3 65416443 65416443 C T MAGI1 Missense_Mutation p.D493N 0.21 deleterious(0) probably_damaging(0.989) TCGA-JX-A3Q0-01 3 74315737 74315737 C T CNTN3 Missense_Mutation p.E961K 0.31 deleterious(0.01) possibly_damaging(0.886) TCGA-JX-A3Q0-01 3 74316501 74316503 AAC - CNTN3 In_Frame_Del p.V911del 0.21 TCGA-JX-A3Q0-01 3 74350921 74350921 C T CNTN3 Missense_Mutation p.E608K 0.27 deleterious(0.03) benign(0.3) TCGA-JX-A3Q0-01 3 87313556 87313556 G C POU1F1 Missense_Mutation p.F133L 0.19 tolerated_low_confidence(0.16) benign(0.02) TCGA-JX-A3Q0-01 3 88193600 88193600 G A ZNF654 3'UTR 0.20 TCGA-JX-A3Q0-01 3 9515167 9515167 C T SETD5 Missense_Mutation p.S1148F 0.21 tolerated(0.29) benign(0.178) TCGA-JX-A3Q0-01 3 9825714 9825714 C T TADA3 Silent p.L368L 0.23 TCGA-JX-A3Q0-01 3 9839354 9839354 C A ARPC4-TTLL3 Silent p.L5L 0.30 TCGA-JX-A3Q0-01 3 9848304 9848304 G A ARPC4 3'Flank 0.24 TCGA-JX-A3Q0-01 3 98512551 98512551 C T ST3GAL6 Silent p.L314L 0.13 TCGA-JX-A3Q0-01 3 99885195 99885195 G A CMSS1 Silent p.K124K 0.20 TCGA-JX-A3Q0-01 4 101108882 101108882 C T DDIT4L Silent p.K178K 0.44 TCGA-JX-A3Q0-01 4 109669261 109669261 C G ETNPPL Missense_Mutation p.E328Q 0.14 deleterious(0.03) benign(0.257) TCGA-JX-A3Q0-01 4 109783676 109783676 C T COL25A1 Missense_Mutation p.R393K 0.43 tolerated(0.94) benign(0.349) TCGA-JX-A3Q0-01 4 114468803 114468803 C T CAMK2D Intron 0.30 TCGA-JX-A3Q0-01 4 123151172 123151172 G A KIAA1109 Silent p.V1043V 0.48 TCGA-JX-A3Q0-01 4 126241223 126241223 A T FAT4 Silent p.I1219I 0.32 TCGA-JX-A3Q0-01 4 129873566 129873566 C T SCLT1 Intron 0.24 TCGA-JX-A3Q0-01 4 143181669 143181669 C G INPP4B Missense_Mutation p.D222H 0.48 tolerated(0.05) possibly_damaging(0.866) TCGA-JX-A3Q0-01 4 144793261 144793261 T G GYPE 3'UTR 0.27 TCGA-JX-A3Q0-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.33 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 4 153893649 153893649 C G FHDC1 Missense_Mutation p.Q447E 0.32 deleterious(0) probably_damaging(0.95) TCGA-JX-A3Q0-01 4 153893681 153893681 C G FHDC1 Missense_Mutation p.N457K 0.38 tolerated(0.14) benign(0.34) TCGA-JX-A3Q0-01 4 156724850 156724850 C T GUCY1B3 Silent p.I496I 0.53 TCGA-JX-A3Q0-01 4 158257849 158257849 C T GRIA2 Silent p.L598L 0.36 TCGA-JX-A3Q0-01 4 159747118 159747129 AGGACTGTGACA - FNIP2 In_Frame_Del p.Q53_D56del 0.36 TCGA-JX-A3Q0-01 4 165890861 165890861 C G TRIM61 Missense_Mutation p.K98N 0.19 deleterious(0) benign(0.288) TCGA-JX-A3Q0-01 4 175413139 175413139 C G HPGD Missense_Mutation p.D257H 0.33 tolerated(0.09) benign(0.221) TCGA-JX-A3Q0-01 4 17654508 17654508 C T FAM184B Silent p.R712R 0.39 TCGA-JX-A3Q0-01 4 178352903 178352903 C T AGA Missense_Mutation p.E334K 0.07 tolerated(0.92) benign(0.014) TCGA-JX-A3Q0-01 4 186321232 186321232 C T ANKRD37 3'UTR 0.15 TCGA-JX-A3Q0-01 4 187516863 187516863 G A FAT1 Missense_Mutation p.S4373F 0.36 probably_damaging(0.999) TCGA-JX-A3Q0-01 4 1961446 1961446 C G WHSC1 Silent p.V1078V 0.21 TCGA-JX-A3Q0-01 4 25677795 25677795 C T SLC34A2 Silent p.I499I 0.21 TCGA-JX-A3Q0-01 4 36230329 36230329 T C ARAP2 Silent p.P260P 0.30 TCGA-JX-A3Q0-01 4 39077739 39077739 G A KLHL5 Missense_Mutation p.A226T 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-JX-A3Q0-01 4 39104955 39104955 C T KLHL5 Missense_Mutation p.P496L 0.39 tolerated(0.81) possibly_damaging(0.665) TCGA-JX-A3Q0-01 4 39448730 39448730 G A KLB Missense_Mutation p.R795Q 0.46 tolerated(0.48) benign(0.023) TCGA-JX-A3Q0-01 4 40244952 40244952 G C RHOH 5'UTR 0.39 TCGA-JX-A3Q0-01 4 40245542 40245542 G C RHOH Missense_Mutation p.R179T 0.43 tolerated(0.09) probably_damaging(0.966) TCGA-JX-A3Q0-01 4 47596503 47596503 C G CORIN 3'UTR 0.35 TCGA-JX-A3Q0-01 4 70596298 70596298 C T SULT1B1 Missense_Mutation p.M233I 0.36 deleterious(0) probably_damaging(0.916) TCGA-JX-A3Q0-01 4 8211480 8211480 G T SH3TC1 Missense_Mutation p.A60S 0.37 tolerated(0.16) benign(0.007) TCGA-JX-A3Q0-01 4 8308731 8308731 C T HTRA3 3'UTR 0.33 TCGA-JX-A3Q0-01 4 8308794 8308794 C T HTRA3 3'UTR 0.33 TCGA-JX-A3Q0-01 4 83719652 83719652 G A SCD5 Silent p.F13F 0.36 TCGA-JX-A3Q0-01 4 83788337 83788337 C G SEC31A Missense_Mutation p.D339H 0.27 deleterious(0) possibly_damaging(0.572) TCGA-JX-A3Q0-01 4 8603131 8603131 G A CPZ Missense_Mutation p.A135T 0.32 deleterious(0.02) benign(0.327) TCGA-JX-A3Q0-01 4 87735996 87735996 G A PTPN13 3'UTR 0.31 TCGA-JX-A3Q0-01 5 101813540 101813540 G A SLCO6A1 Silent p.V214V 0.15 TCGA-JX-A3Q0-01 5 112768996 112768996 G A TSSK1B 3'UTR 0.45 TCGA-JX-A3Q0-01 5 112769108 112769108 C T TSSK1B 3'UTR 0.32 TCGA-JX-A3Q0-01 5 129521829 129521829 G T CHSY3 3'UTR 0.14 TCGA-JX-A3Q0-01 5 131553006 131553006 G A P4HA2 Missense_Mutation p.S72L 0.35 deleterious(0.01) possibly_damaging(0.85) TCGA-JX-A3Q0-01 5 133918436 133918436 G A JADE2 3'UTR 0.20 TCGA-JX-A3Q0-01 5 134062200 134062200 G C SEC24A 3'UTR 0.18 TCGA-JX-A3Q0-01 5 139884800 139884800 G C ANKHD1 Missense_Mutation p.E1082Q 0.50 possibly_damaging(0.728) TCGA-JX-A3Q0-01 5 140208714 140208714 C A PCDHA6 Missense_Mutation p.N346K 0.30 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-JX-A3Q0-01 5 140348363 140348363 C T PCDHAC2 Missense_Mutation p.S671L 0.37 deleterious(0) probably_damaging(0.983) TCGA-JX-A3Q0-01 5 140783915 140783915 G A PCDHGA9 Missense_Mutation p.A466T 0.40 deleterious_low_confidence(0.01) benign(0.088) TCGA-JX-A3Q0-01 5 141233619 141233619 C G PCDH1 Missense_Mutation p.E1234D 0.35 deleterious_low_confidence(0) benign(0.063) TCGA-JX-A3Q0-01 5 14290885 14290885 G A TRIO Missense_Mutation p.E201K 0.30 possibly_damaging(0.675) TCGA-JX-A3Q0-01 5 149276280 149276280 C G PDE6A Missense_Mutation p.E489D 0.25 tolerated(0.3) benign(0.002) TCGA-JX-A3Q0-01 5 149375086 149375086 C T TIGD6 Missense_Mutation p.E276K 0.36 tolerated(1) benign(0.01) TCGA-JX-A3Q0-01 5 150928860 150928860 C T FAT2 Silent p.L1595L 0.33 TCGA-JX-A3Q0-01 5 154396407 154396407 C T KIF4B Silent p.L996L 0.32 TCGA-JX-A3Q0-01 5 160716308 160716308 C T GABRB2 3'UTR 0.44 TCGA-JX-A3Q0-01 5 167687383 167687383 G A TENM2 Missense_Mutation p.E2510K 0.24 deleterious(0) probably_damaging(0.998) TCGA-JX-A3Q0-01 5 167850938 167850938 G A WWC1 Missense_Mutation p.D559N 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-JX-A3Q0-01 5 167983674 167983674 C T PANK3 3'UTR 0.45 TCGA-JX-A3Q0-01 5 169675650 169675650 C T LCP2 3'UTR 0.28 TCGA-JX-A3Q0-01 5 176721266 176721266 C T NSD1 Silent p.L2299L 0.46 TCGA-JX-A3Q0-01 5 177310846 177310846 G A RP11-423H2.1 RNA 0.41 TCGA-JX-A3Q0-01 5 180684379 180684379 G A TRIM52 3'UTR 0.30 TCGA-JX-A3Q0-01 5 33527310 33527310 T C ADAMTS12 Missense_Mutation p.K1590E 0.35 tolerated(0.63) unknown(0) TCGA-JX-A3Q0-01 5 36039690 36039690 G A UGT3A2 Missense_Mutation p.H322Y 0.31 tolerated(0.08) benign(0.03) TCGA-JX-A3Q0-01 5 40853884 40853884 G A CARD6 Missense_Mutation p.R817K 0.40 tolerated(0.06) benign(0.156) TCGA-JX-A3Q0-01 5 41201697 41201697 C T C6 Missense_Mutation p.G88E 0.48 tolerated(0.05) possibly_damaging(0.585) TCGA-JX-A3Q0-01 5 42718806 42718806 C T GHR Silent p.F399F 0.46 TCGA-JX-A3Q0-01 5 42719029 42719029 C T GHR Nonsense_Mutation p.Q474* 0.50 TCGA-JX-A3Q0-01 5 42800511 42800511 C T SEPP1 3'UTR 0.37 TCGA-JX-A3Q0-01 5 43388449 43388449 C G CCL28 Intron 0.31 TCGA-JX-A3Q0-01 5 5464406 5464406 G A KIAA0947 Silent p.L1653L 0.48 TCGA-JX-A3Q0-01 5 54948506 54948506 G C SLC38A9 Missense_Mutation p.S268C 0.39 tolerated(0.11) possibly_damaging(0.847) TCGA-JX-A3Q0-01 5 55149244 55149244 C T IL31RA Intron 0.24 TCGA-JX-A3Q0-01 5 68680719 68680719 G A RAD17 Missense_Mutation p.G213R 0.32 deleterious(0) probably_damaging(0.996) TCGA-JX-A3Q0-01 5 75757463 75757463 G A IQGAP2 Missense_Mutation p.E39K 0.30 deleterious(0) probably_damaging(0.988) TCGA-JX-A3Q0-01 5 76359499 76359499 C T AGGF1 3'UTR 0.44 TCGA-JX-A3Q0-01 5 76736643 76736643 C T WDR41 Missense_Mutation p.E293K 0.31 tolerated(0.33) benign(0.005) TCGA-JX-A3Q0-01 5 78586979 78586979 C T JMY Nonsense_Mutation p.Q462* 0.34 TCGA-JX-A3Q0-01 5 78975427 78975427 C T PAPD4 Missense_Mutation p.R412C 0.34 deleterious(0) probably_damaging(0.988) TCGA-JX-A3Q0-01 5 80256695 80256695 C T RASGRF2 Silent p.L46L 0.42 TCGA-JX-A3Q0-01 5 96127859 96127859 C T ERAP1 Missense_Mutation p.E409K 0.23 tolerated(0.62) benign(0.202) TCGA-JX-A3Q0-01 6 10556959 10556959 C G GCNT2 Intron 0.30 TCGA-JX-A3Q0-01 6 105850842 105850842 G A PREP 5'UTR 0.36 TCGA-JX-A3Q0-01 6 109232115 109232115 G C ARMC2 Missense_Mutation p.R346T 0.33 deleterious(0.02) benign(0.035) TCGA-JX-A3Q0-01 6 111214813 111214813 G C AMD1 Missense_Mutation p.Q333H 0.14 tolerated_low_confidence(0.09) benign(0.001) TCGA-JX-A3Q0-01 6 111289020 111289020 C G GTF3C6 3'UTR 0.23 TCGA-JX-A3Q0-01 6 117053529 117053529 C A KPNA5 3'UTR 0.49 TCGA-JX-A3Q0-01 6 127834155 127834155 C T SOGA3 Missense_Mutation p.E456K 0.38 deleterious(0.01) benign(0.222) TCGA-JX-A3Q0-01 6 1314684 1314684 G C FOXQ1 3'UTR 0.33 TCGA-JX-A3Q0-01 6 134274523 134274523 C T TBPL1 5'UTR 0.45 TCGA-JX-A3Q0-01 6 13470442 13470442 G A AL583828.1 Missense_Mutation p.S24L 0.40 benign(0) TCGA-JX-A3Q0-01 6 139203879 139203879 G A ECT2L Silent p.L633L 0.30 TCGA-JX-A3Q0-01 6 139609718 139609718 C T TXLNB Missense_Mutation p.E107K 0.39 deleterious(0.04) possibly_damaging(0.521) TCGA-JX-A3Q0-01 6 145079123 145079123 C T UTRN Silent p.I2831I 0.25 TCGA-JX-A3Q0-01 6 148873115 148873115 C T SASH1 3'UTR 0.26 TCGA-JX-A3Q0-01 6 152754964 152754964 G A SYNE1 Missense_Mutation p.S1476L 0.38 benign(0.221) TCGA-JX-A3Q0-01 6 153310988 153310988 G A MTRF1L 3'UTR 0.39 TCGA-JX-A3Q0-01 6 15496858 15496858 G A JARID2 Missense_Mutation p.E468K 0.27 tolerated_low_confidence(0.21) benign(0.187) TCGA-JX-A3Q0-01 6 170846385 170846385 C T PSMB1 Silent p.Q159Q 0.17 TCGA-JX-A3Q0-01 6 24146479 24146479 G A NRSN1 3'UTR 0.30 TCGA-JX-A3Q0-01 6 24781754 24781754 C G GMNN Missense_Mutation p.S60C 0.42 deleterious(0) possibly_damaging(0.868) TCGA-JX-A3Q0-01 6 25916994 25916995 - A SLC17A2 Frame_Shift_Ins p.S284Qfs*24 0.22 TCGA-JX-A3Q0-01 6 27783096 27783096 C T HIST1H2BM Missense_Mutation p.S92L 0.38 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-JX-A3Q0-01 6 29912276 29912276 G C HLA-A Splice_Site p.X299_splice 0.15 TCGA-JX-A3Q0-01 6 30610946 30610946 C T ATAT1 Intron 0.45 TCGA-JX-A3Q0-01 6 30611209 30611209 C T ATAT1 Intron 0.46 TCGA-JX-A3Q0-01 6 30614559 30614559 C A ATAT1 3'UTR 0.36 TCGA-JX-A3Q0-01 6 30882508 30882508 G C VARS2 Intron 0.40 TCGA-JX-A3Q0-01 6 31324681 31324681 C A HLA-B Nonsense_Mutation p.E43* 0.21 TCGA-JX-A3Q0-01 6 3272649 3272649 G A SLC22A23 3'UTR 0.22 TCGA-JX-A3Q0-01 6 32810552 32810552 G A PSMB8 Missense_Mutation p.R102W 0.56 deleterious(0) possibly_damaging(0.521) TCGA-JX-A3Q0-01 6 32816891 32816891 G C TAP1 Nonsense_Mutation p.S478* 0.17 TCGA-JX-A3Q0-01 6 3323946 3323946 C G SLC22A23 Intron 0.53 TCGA-JX-A3Q0-01 6 33246447 33246447 C T B3GALT4 3'UTR 0.27 TCGA-JX-A3Q0-01 6 33246901 33246901 C T WDR46 3'UTR 0.38 TCGA-JX-A3Q0-01 6 34208659 34208659 G A HMGA1 Silent p.P34P 0.42 TCGA-JX-A3Q0-01 6 37321864 37321864 G A RNF8 5'UTR 0.33 TCGA-JX-A3Q0-01 6 41196110 41196110 G C TREML4 5'UTR 0.32 TCGA-JX-A3Q0-01 6 42853756 42853756 G C RPL7L1 Missense_Mutation p.G156A 0.23 deleterious(0.01) possibly_damaging(0.902) TCGA-JX-A3Q0-01 6 44255656 44255656 C T TCTE1 Splice_Site 0.33 TCGA-JX-A3Q0-01 6 46793026 46793026 G C MEP1A Missense_Mutation p.D192H 0.49 deleterious(0.01) benign(0.315) TCGA-JX-A3Q0-01 6 52363711 52363711 C G TRAM2 3'UTR 0.47 TCGA-JX-A3Q0-01 6 64431370 64431370 T G EYS Missense_Mutation p.I2853L 0.45 tolerated(0.19) benign(0.022) TCGA-JX-A3Q0-01 6 64940607 64940607 G A EYS Missense_Mutation p.S2101F 0.56 deleterious(0.03) benign(0.277) TCGA-JX-A3Q0-01 6 70875853 70875853 G A COL19A1 Silent p.G807G 0.54 TCGA-JX-A3Q0-01 6 87964650 87964650 G A ZNF292 Missense_Mutation p.V435I 0.34 deleterious(0.01) probably_damaging(0.97) TCGA-JX-A3Q0-01 6 89790830 89790830 C T PNRC1 Missense_Mutation p.R73C 0.17 tolerated_low_confidence(0.1) possibly_damaging(0.897) TCGA-JX-A3Q0-01 6 90383048 90383048 C T MDN1 Missense_Mutation p.E4461K 0.19 benign(0.002) TCGA-JX-A3Q0-01 6 90466072 90466072 C T MDN1 Missense_Mutation p.E914K 0.25 benign(0.191) TCGA-JX-A3Q0-01 7 100201809 100201809 C T PCOLCE Silent p.L144L 0.57 TCGA-JX-A3Q0-01 7 100677927 100677927 C G MUC17 Missense_Mutation p.S1077C 0.08 benign(0.162) TCGA-JX-A3Q0-01 7 111381267 111381267 C T DOCK4 Silent p.P1632P 0.44 TCGA-JX-A3Q0-01 7 112407779 112407779 C T TMEM168 Missense_Mutation p.D523N 0.38 tolerated(0.22) possibly_damaging(0.553) TCGA-JX-A3Q0-01 7 122342331 122342331 C G RNF148 Silent p.L158L 0.44 TCGA-JX-A3Q0-01 7 123332690 123332690 G C WASL Nonsense_Mutation p.S353* 0.29 TCGA-JX-A3Q0-01 7 123514826 123514826 C T HYAL4 Silent p.V322V 0.57 TCGA-JX-A3Q0-01 7 1273250 1273250 G A UNCX Silent p.A123A 0.32 TCGA-JX-A3Q0-01 7 140111670 140111670 C G RAB19 Intron 0.23 TCGA-JX-A3Q0-01 7 142498963 142498963 G C TRBC2 Silent p.L80L 0.28 TCGA-JX-A3Q0-01 7 142499042 142499042 G A TRBC2 Missense_Mutation p.D107N 0.17 deleterious(0.04) possibly_damaging(0.813) TCGA-JX-A3Q0-01 7 149172453 149172453 G A ZNF746 Silent p.F320F 0.15 TCGA-JX-A3Q0-01 7 150690919 150690919 G A NOS3 Missense_Mutation p.E10K 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-JX-A3Q0-01 7 150739122 150739122 G A ABCB8 Silent p.V564V 0.32 TCGA-JX-A3Q0-01 7 151878287 151878287 G A KMT2C Nonsense_Mutation p.Q2220* 0.39 TCGA-JX-A3Q0-01 7 151878464 151878464 G A KMT2C Nonsense_Mutation p.Q2161* 0.39 TCGA-JX-A3Q0-01 7 151947007 151947007 C G KMT2C Missense_Mutation p.K589N 0.43 benign(0.008) TCGA-JX-A3Q0-01 7 154237635 154237635 G A DPP6 Missense_Mutation p.R159K 0.61 tolerated(0.15) possibly_damaging(0.767) TCGA-JX-A3Q0-01 7 158560457 158560457 G A ESYT2 Missense_Mutation p.S319L 0.39 deleterious(0.01) benign(0.005) TCGA-JX-A3Q0-01 7 22765992 22765992 C G IL6 Intron 0.27 TCGA-JX-A3Q0-01 7 26237284 26237284 C T HNRNPA2B1 Silent p.L37L 0.28 TCGA-JX-A3Q0-01 7 27135254 27135254 G C HOXA1 Nonsense_Mutation p.S93* 0.23 TCGA-JX-A3Q0-01 7 27196076 27196076 G A HOXA7 Missense_Mutation p.S30F 0.19 deleterious(0) possibly_damaging(0.823) TCGA-JX-A3Q0-01 7 29126135 29126135 C T CPVL Missense_Mutation p.E192K 0.58 tolerated(0.1) possibly_damaging(0.908) TCGA-JX-A3Q0-01 7 30101579 30101579 G A PLEKHA8 Missense_Mutation p.E389K 0.19 deleterious(0) probably_damaging(0.986) TCGA-JX-A3Q0-01 7 34118526 34118526 C T BMPER Missense_Mutation p.T379I 0.14 tolerated(0.28) benign(0.143) TCGA-JX-A3Q0-01 7 37936490 37936490 G A NME8 Missense_Mutation p.M521I 0.52 deleterious(0.01) probably_damaging(0.954) TCGA-JX-A3Q0-01 7 41728971 41728971 G C INHBA 3'UTR 0.45 TCGA-JX-A3Q0-01 7 43484406 43484406 G A HECW1 Silent p.V545V 0.39 TCGA-JX-A3Q0-01 7 44097863 44097863 G A DBNL Missense_Mutation p.E230K 0.35 tolerated(0.06) benign(0.005) TCGA-JX-A3Q0-01 7 48318457 48318457 G A ABCA13 Missense_Mutation p.D2556N 0.42 benign(0.012) TCGA-JX-A3Q0-01 7 50097646 50097646 G A ZPBP Silent p.L142L 0.37 TCGA-JX-A3Q0-01 7 55249087 55249087 C T EGFR Silent p.F795F 0.44 TCGA-JX-A3Q0-01 7 55929647 55929647 C T SEPT14 Missense_Mutation p.D15N 0.24 tolerated(0.31) benign(0.002) TCGA-JX-A3Q0-01 7 5967906 5967906 C G RSPH10B Missense_Mutation p.E785Q 0.18 deleterious(0.04) benign(0.064) TCGA-JX-A3Q0-01 7 6154999 6154999 C G USP42 Missense_Mutation p.S96C 0.39 tolerated(0.05) probably_damaging(0.999) TCGA-JX-A3Q0-01 7 64863368 64863368 G A ZNF92 Missense_Mutation p.R114K 0.10 tolerated(0.45) benign(0.104) TCGA-JX-A3Q0-01 7 70254876 70254876 G C AUTS2 Missense_Mutation p.E892Q 0.42 deleterious(0.01) possibly_damaging(0.87) TCGA-JX-A3Q0-01 7 72717964 72717964 G A NSUN5 Missense_Mutation p.A335V 0.29 deleterious(0) possibly_damaging(0.889) TCGA-JX-A3Q0-01 7 73483018 73483018 G A ELN Silent p.R721R 0.11 TCGA-JX-A3Q0-01 7 76751981 76751981 G C CCDC146 5'UTR 0.25 TCGA-JX-A3Q0-01 7 79848624 79848624 G C GNAI1 3'UTR 0.38 TCGA-JX-A3Q0-01 7 82390753 82390753 C T PCLO Missense_Mutation p.D5022N 0.22 unknown(0) TCGA-JX-A3Q0-01 7 83014705 83014705 C T SEMA3E Missense_Mutation p.E594K 0.39 deleterious(0) possibly_damaging(0.808) TCGA-JX-A3Q0-01 7 88965996 88965996 C T ZNF804B Missense_Mutation p.H1234Y 0.43 deleterious(0) probably_damaging(0.92) TCGA-JX-A3Q0-01 7 88966146 88966146 C T ZNF804B Nonsense_Mutation p.Q1284* 0.46 TCGA-JX-A3Q0-01 7 94178898 94178898 G A CASD1 Silent p.L589L 0.08 TCGA-JX-A3Q0-01 7 94297913 94297913 G A PEG10 3'UTR 0.42 TCGA-JX-A3Q0-01 7 97820151 97820151 C T LMTK2 Silent p.L370L 0.46 TCGA-JX-A3Q0-01 7 98460788 98460788 G A TMEM130 Silent p.V107V 0.13 TCGA-JX-A3Q0-01 7 99997555 99997555 G C PILRA 3'UTR 0.32 TCGA-JX-A3Q0-01 8 101932012 101932012 C G YWHAZ 3'UTR 0.47 TCGA-JX-A3Q0-01 8 102570802 102570802 C T GRHL2 Missense_Mutation p.S147F 0.45 tolerated(0.06) benign(0.13) TCGA-JX-A3Q0-01 8 103839266 103839266 C G AZIN1 3'UTR 0.28 TCGA-JX-A3Q0-01 8 103839327 103839327 C T AZIN1 3'UTR 0.26 TCGA-JX-A3Q0-01 8 10387108 10387108 G A PRSS55 Silent p.Q82Q 0.43 TCGA-JX-A3Q0-01 8 110461662 110461662 G A PKHD1L1 Missense_Mutation p.D2041N 0.32 tolerated(0.28) benign(0.006) TCGA-JX-A3Q0-01 8 110530692 110530692 G C PKHD1L1 Missense_Mutation p.E3996Q 0.24 tolerated(0.1) benign(0.057) TCGA-JX-A3Q0-01 8 110587800 110587800 C T SYBU Missense_Mutation p.D443N 0.38 deleterious(0) possibly_damaging(0.614) TCGA-JX-A3Q0-01 8 113649101 113649101 G A CSMD3 Silent p.I1220I 0.38 TCGA-JX-A3Q0-01 8 113668533 113668533 G A CSMD3 Missense_Mutation p.H952Y 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-JX-A3Q0-01 8 121823667 121823667 G A SNTB1 Silent p.I139I 0.39 TCGA-JX-A3Q0-01 8 124664078 124664078 C G KLHL38 Missense_Mutation p.W363C 0.36 deleterious(0) probably_damaging(0.989) TCGA-JX-A3Q0-01 8 131088615 131088615 G A ASAP1 Missense_Mutation p.L894F 0.80 tolerated(0.13) probably_damaging(0.959) TCGA-JX-A3Q0-01 8 131848627 131848627 C T ADCY8 Silent p.L857L 0.50 TCGA-JX-A3Q0-01 8 134072369 134072369 C T SLA Missense_Mutation p.E53K 0.34 tolerated(0.11) possibly_damaging(0.503) TCGA-JX-A3Q0-01 8 145007171 145007171 C G PLEC Missense_Mutation p.Q646H 0.37 unknown(0) TCGA-JX-A3Q0-01 8 145111904 145111904 C T OPLAH Silent p.L551L 0.53 TCGA-JX-A3Q0-01 8 19316060 19316060 C G CSGALNACT1 Missense_Mutation p.R243P 0.16 deleterious(0) probably_damaging(1) TCGA-JX-A3Q0-01 8 20055052 20055052 C T ATP6V1B2 Silent p.L45L 0.47 TCGA-JX-A3Q0-01 8 23082497 23082497 C T TNFRSF10A Silent p.G26G 0.33 TCGA-JX-A3Q0-01 8 27888822 27888822 C G NUGGC Missense_Mutation p.E616Q 0.37 tolerated(0.1) benign(0.232) TCGA-JX-A3Q0-01 8 3351249 3351249 C T CSMD1 Splice_Site p.X449_splice 0.23 TCGA-JX-A3Q0-01 8 37620216 37620216 C T PROSC Silent p.V13V 0.46 TCGA-JX-A3Q0-01 8 37730596 37730596 G C RAB11FIP1 Missense_Mutation p.S575C 0.29 deleterious(0.05) benign(0.012) TCGA-JX-A3Q0-01 8 38369464 38369464 C T C8orf86 3'UTR 0.32 TCGA-JX-A3Q0-01 8 48694968 48694968 C T PRKDC Silent p.R3788R 0.27 TCGA-JX-A3Q0-01 8 48792189 48792189 T C PRKDC Missense_Mutation p.T1699A 0.56 benign(0.272) TCGA-JX-A3Q0-01 8 53092782 53092782 C T ST18 Missense_Mutation p.M59I 0.37 deleterious(0.03) benign(0.134) TCGA-JX-A3Q0-01 8 53570327 53570327 C T RB1CC1 Missense_Mutation p.E688K 0.25 deleterious_low_confidence(0) benign(0.427) TCGA-JX-A3Q0-01 8 55542413 55542413 C T RP1 Nonsense_Mutation p.Q1991* 0.28 TCGA-JX-A3Q0-01 8 56986433 56986433 C G RPS20 Intron 0.21 TCGA-JX-A3Q0-01 8 6360236 6360236 G A ANGPT2 3'UTR 0.47 TCGA-JX-A3Q0-01 8 68140257 68140257 C T ARFGEF1 Missense_Mutation p.G1178R 0.47 deleterious(0.01) probably_damaging(0.918) TCGA-JX-A3Q0-01 8 72756051 72756051 G A MSC Silent p.R121R 0.50 TCGA-JX-A3Q0-01 8 73939209 73939209 G A TERF1 Missense_Mutation p.R270K 0.42 tolerated(0.39) benign(0.05) TCGA-JX-A3Q0-01 8 73939210 73939210 A T TERF1 Missense_Mutation p.R270S 0.42 deleterious(0.05) possibly_damaging(0.515) TCGA-JX-A3Q0-01 8 93023263 93023263 G A RUNX1T1 Silent p.F186F 0.20 TCGA-JX-A3Q0-01 8 98735262 98735262 G C MTDH Missense_Mutation p.Q559H 0.09 tolerated(0.08) probably_damaging(0.999) TCGA-JX-A3Q0-01 9 112211207 112211207 G A PTPN3 Intron 0.29 TCGA-JX-A3Q0-01 9 113141679 113141679 C G SVEP1 Silent p.L3452L 0.21 TCGA-JX-A3Q0-01 9 113208160 113208160 C T SVEP1 Missense_Mutation p.D1474N 0.32 benign(0.142) TCGA-JX-A3Q0-01 9 117130767 117130767 C G AKNA Missense_Mutation p.E509Q 0.30 tolerated(0.11) benign(0.028) TCGA-JX-A3Q0-01 9 117240670 117240670 G C DFNB31 Intron 0.39 TCGA-JX-A3Q0-01 9 117240709 117240709 G C DFNB31 Intron 0.33 TCGA-JX-A3Q0-01 9 124241356 124241356 G A GGTA1P RNA 0.17 TCGA-JX-A3Q0-01 9 131038452 131038452 T C SWI5 Missense_Mutation p.W10R 0.29 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-JX-A3Q0-01 9 131151912 131151912 G A URM1 3'UTR 0.45 TCGA-JX-A3Q0-01 9 132637226 132637226 C G USP20 Silent p.L680L 0.29 TCGA-JX-A3Q0-01 9 136230621 136230621 G A SURF4 Silent p.I186I 0.60 TCGA-JX-A3Q0-01 9 137726972 137726972 C T COL5A1 Silent p.L1764L 0.39 TCGA-JX-A3Q0-01 9 139371623 139371623 C T SEC16A Missense_Mutation p.E149K 0.39 tolerated(0.13) benign(0.121) TCGA-JX-A3Q0-01 9 140287559 140287559 C T EXD3 Intron 0.36 TCGA-JX-A3Q0-01 9 140605430 140605430 G A EHMT1 Silent p.A11A 0.26 TCGA-JX-A3Q0-01 9 14859349 14859349 C T FREM1 Missense_Mutation p.D155N 0.44 tolerated(0.17) benign(0.253) TCGA-JX-A3Q0-01 9 16410378 16410378 C T BNC2 3'UTR 0.40 TCGA-JX-A3Q0-01 9 20929372 20929372 G A FOCAD Missense_Mutation p.E1032K 0.26 deleterious(0.01) probably_damaging(0.91) TCGA-JX-A3Q0-01 9 21441165 21441165 T C IFNA1 3'UTR 0.39 TCGA-JX-A3Q0-01 9 2193604 2193604 G C SMARCA2 3'UTR 0.42 TCGA-JX-A3Q0-01 9 21974735 21974735 A C CDKN2A Missense_Mutation p.L31R 0.50 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q0-01 9 33465793 33465793 C T NOL6 Missense_Mutation p.A823T 0.38 deleterious(0.02) benign(0.375) TCGA-JX-A3Q0-01 9 33472239 33472239 C G NOL6 Missense_Mutation p.E76Q 0.08 deleterious(0) possibly_damaging(0.502) TCGA-JX-A3Q0-01 9 35450039 35450039 C T ATP8B5P RNA 0.15 TCGA-JX-A3Q0-01 9 35846020 35846020 G A TMEM8B Missense_Mutation p.E110K 0.36 tolerated(0.47) benign(0.028) TCGA-JX-A3Q0-01 9 42368306 42368306 G A ANKRD20A2 5'UTR 0.50 TCGA-JX-A3Q0-01 9 71397641 71397641 C G FAM122A 3'UTR 0.32 TCGA-JX-A3Q0-01 9 74481696 74481696 G A ABHD17B Intron 0.12 TCGA-JX-A3Q0-01 9 82286177 82286177 C T TLE4 Intron 0.38 TCGA-JX-A3Q0-01 9 86292833 86292833 G A UBQLN1 Missense_Mutation p.S305F 0.33 deleterious(0) probably_damaging(0.982) TCGA-JX-A3Q0-01 9 91661881 91661881 C T SHC3 Missense_Mutation p.E331K 0.21 tolerated(0.08) benign(0.033) TCGA-JX-A3Q0-01 9 95870053 95870053 G C C9orf89 Silent p.L35L 0.15 TCGA-JX-A3Q0-01 9 96441268 96441268 G C PHF2 3'UTR 0.27 TCGA-JX-A3Q0-01 9 98208100 98208100 G T PTCH1 3'UTR 0.35 TCGA-JX-A3Q0-01 9 99266066 99266066 G C CDC14B Missense_Mutation p.S489C 0.31 deleterious(0.01) benign(0.319) TCGA-JX-A3Q0-01 9 99522049 99522049 G A ZNF510 Nonsense_Mutation p.Q355* 0.43 TCGA-JX-A3Q0-01 9 99580898 99580898 C T ZNF782 Silent p.Q469Q 0.31 TCGA-JX-A3Q0-01 X 100613379 100613379 G C BTK Missense_Mutation p.Q341E 0.11 tolerated(1) possibly_damaging(0.519) TCGA-JX-A3Q0-01 X 100662883 100662883 C T GLA Silent p.L3L 0.28 TCGA-JX-A3Q0-01 X 101139058 101139058 C T ZMAT1 Silent p.E447E 0.22 TCGA-JX-A3Q0-01 X 101408943 101408943 G C BEX5 Missense_Mutation p.P99A 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-JX-A3Q0-01 X 101627968 101627968 G A NXF2B Intron 0.11 TCGA-JX-A3Q0-01 X 101909941 101909941 C T GPRASP1 Missense_Mutation p.S367L 0.23 tolerated(0.27) benign(0.003) TCGA-JX-A3Q0-01 X 103499058 103499058 C G ESX1 Missense_Mutation p.E95Q 0.18 tolerated_low_confidence(0.17) benign(0.403) TCGA-JX-A3Q0-01 X 105200238 105200238 G A NRK 3'UTR 0.26 TCGA-JX-A3Q0-01 X 107976123 107976123 G A IRS4 Missense_Mutation p.A1151V 0.26 deleterious_low_confidence(0) unknown(0) TCGA-JX-A3Q0-01 X 110928226 110928226 G A ALG13 Missense_Mutation p.G93E 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.515) TCGA-JX-A3Q0-01 X 115588822 115588822 C T SLC6A14 Silent p.G554G 0.27 TCGA-JX-A3Q0-01 X 117528059 117528059 A G WDR44 Missense_Mutation p.S290G 0.27 tolerated(0.19) benign(0) TCGA-JX-A3Q0-01 X 118763424 118763424 C T SEPT6 Silent p.K379K 0.21 TCGA-JX-A3Q0-01 X 122866848 122866848 G A THOC2 Missense_Mutation p.P9S 0.10 tolerated(0.44) benign(0.01) TCGA-JX-A3Q0-01 X 123513375 123513375 C T TENM1 3'UTR 0.23 TCGA-JX-A3Q0-01 X 125955019 125955019 C T CXorf64 Missense_Mutation p.S133F 0.26 deleterious(0.01) probably_damaging(0.955) TCGA-JX-A3Q0-01 X 128890470 128890470 G A XPNPEP2 Missense_Mutation p.E436K 0.11 deleterious(0.02) benign(0.213) TCGA-JX-A3Q0-01 X 129162683 129162683 C T BCORL1 Silent p.L1384L 0.33 TCGA-JX-A3Q0-01 X 129506941 129506941 G A SLC25A14 3'UTR 0.27 TCGA-JX-A3Q0-01 X 131351094 131351094 C G RAP2C Missense_Mutation p.R68T 0.18 deleterious(0) probably_damaging(0.917) TCGA-JX-A3Q0-01 X 131351137 131351137 C T RAP2C Missense_Mutation p.E54K 0.18 deleterious(0) probably_damaging(0.995) TCGA-JX-A3Q0-01 X 132436190 132436190 C T GPC4 3'UTR 0.18 TCGA-JX-A3Q0-01 X 135427532 135427532 C T GPR112 Missense_Mutation p.T556I 0.06 deleterious(0) benign(0.045) TCGA-JX-A3Q0-01 X 135574333 135574333 G C BRS3 Silent p.L333L 0.27 TCGA-JX-A3Q0-01 X 135618326 135618326 G A VGLL1 Silent p.L49L 0.19 TCGA-JX-A3Q0-01 X 135955584 135955584 G A RBMX 3'Flank 0.43 TCGA-JX-A3Q0-01 X 136113007 136113007 C G GPR101 Missense_Mutation p.R276T 0.29 tolerated(0.61) benign(0) TCGA-JX-A3Q0-01 X 136649738 136649738 C T ZIC3 Silent p.V296V 0.23 TCGA-JX-A3Q0-01 X 136649777 136649777 C T ZIC3 Silent p.F309F 0.21 TCGA-JX-A3Q0-01 X 136653695 136653695 C T ZIC3 3'UTR 0.29 TCGA-JX-A3Q0-01 X 13770894 13770894 G A OFD1 Intron 0.28 TCGA-JX-A3Q0-01 X 14027161 14027161 C T GEMIN8 Silent p.E200E 0.24 TCGA-JX-A3Q0-01 X 142718330 142718330 G A SLITRK4 Silent p.L199L 0.19 TCGA-JX-A3Q0-01 X 148586690 148586690 C T IDS 5'UTR 0.21 TCGA-JX-A3Q0-01 X 1508375 1508375 G A SLC25A6 Silent p.S119S 0.21 TCGA-JX-A3Q0-01 X 150840129 150840129 G A PASD1 Missense_Mutation p.A439T 0.19 tolerated(1) benign(0.002) TCGA-JX-A3Q0-01 X 153215957 153215957 G A HCFC1 Missense_Mutation p.S1914F 0.36 deleterious(0.01) probably_damaging(0.974) TCGA-JX-A3Q0-01 X 153590890 153590890 C T FLNA Missense_Mutation p.D821N 0.27 deleterious(0.02) probably_damaging(1) TCGA-JX-A3Q0-01 X 16720991 16720991 G T CTPS2 Nonsense_Mutation p.S12* 0.18 TCGA-JX-A3Q0-01 X 17092270 17092270 G A REPS2 Missense_Mutation p.R456K 0.13 tolerated(0.28) benign(0.175) TCGA-JX-A3Q0-01 X 19626095 19626095 G A SH3KBP1 Silent p.F322F 0.26 TCGA-JX-A3Q0-01 X 21670430 21670430 G C CNKSR2 Missense_Mutation p.E966Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-JX-A3Q0-01 X 21675921 21675921 G A KLHL34 5'UTR 0.20 TCGA-JX-A3Q0-01 X 22112215 22112215 G A PHEX Missense_Mutation p.E283K 0.24 tolerated(0.17) benign(0.356) TCGA-JX-A3Q0-01 X 3228085 3228085 G A MXRA5 Missense_Mutation p.S2720L 0.22 deleterious(0.03) benign(0.344) TCGA-JX-A3Q0-01 X 39937175 39937175 G A BCOR Missense_Mutation p.S3L 0.17 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-JX-A3Q0-01 X 43654997 43654997 C G MAOB Missense_Mutation p.E253Q 0.17 tolerated(0.2) benign(0.022) TCGA-JX-A3Q0-01 X 46433633 46433633 C T CHST7 Silent p.L89L 0.29 TCGA-JX-A3Q0-01 X 46541948 46541948 C T SLC9A7 Silent p.L116L 0.18 TCGA-JX-A3Q0-01 X 47041164 47041164 C T RBM10 Missense_Mutation p.S531L 0.30 tolerated(0.05) benign(0.375) TCGA-JX-A3Q0-01 X 47106535 47106535 G A USP11 Missense_Mutation p.E822K 0.28 tolerated(0.75) probably_damaging(1) TCGA-JX-A3Q0-01 X 47486689 47486689 G A CFP Missense_Mutation p.S206L 0.26 deleterious(0.04) benign(0.225) TCGA-JX-A3Q0-01 X 47835533 47835533 C T ZNF182 3'UTR 0.06 TCGA-JX-A3Q0-01 X 48687472 48687472 C T ERAS 5'UTR 0.14 TCGA-JX-A3Q0-01 X 48923078 48923078 G A CCDC120 Missense_Mutation p.R259Q 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-JX-A3Q0-01 X 48935306 48935306 G A WDR45 Silent p.I77I 0.37 TCGA-JX-A3Q0-01 X 49855078 49855078 G A CLCN5 Missense_Mutation p.E684K 0.18 tolerated(0.23) benign(0.198) TCGA-JX-A3Q0-01 X 50351126 50351126 C T SHROOM4 Missense_Mutation p.E1006K 0.14 tolerated(0.08) probably_damaging(0.919) TCGA-JX-A3Q0-01 X 53223512 53223512 C T KDM5C Missense_Mutation p.E1283K 0.28 deleterious(0) probably_damaging(0.998) TCGA-JX-A3Q0-01 X 54950074 54950074 C T TRO Missense_Mutation p.S370F 0.24 deleterious(0.01) unknown(0) TCGA-JX-A3Q0-01 X 55051197 55051197 C T ALAS2 Silent p.Q86Q 0.30 TCGA-JX-A3Q0-01 X 56292146 56292146 C T KLF8 Silent p.L205L 0.18 TCGA-JX-A3Q0-01 X 64722153 64722153 G A ZC3H12B Silent p.G525G 0.35 TCGA-JX-A3Q0-01 X 65252392 65252392 G A VSIG4 Silent p.A204A 0.20 TCGA-JX-A3Q0-01 X 65390321 65390321 C T HEPH Intron 0.21 TCGA-JX-A3Q0-01 X 67316727 67316727 G A OPHN1 Silent p.I557I 0.17 TCGA-JX-A3Q0-01 X 67943510 67943510 G T STARD8 Nonsense_Mutation p.E948* 0.13 TCGA-JX-A3Q0-01 X 67943675 67943675 G C STARD8 Missense_Mutation p.V1003L 0.21 tolerated(0.1) benign(0.005) TCGA-JX-A3Q0-01 X 69640040 69640040 G A KIF4A Silent p.K1208K 0.17 TCGA-JX-A3Q0-01 X 70145747 70145747 C G SLC7A3 Missense_Mutation p.E592D 0.25 tolerated(0.23) benign(0.013) TCGA-JX-A3Q0-01 X 70524984 70524984 C T ITGB1BP2 Missense_Mutation p.S329L 0.29 tolerated(0.1) unknown(0) TCGA-JX-A3Q0-01 X 70787860 70787860 C T OGT Nonsense_Mutation p.R954* 0.23 TCGA-JX-A3Q0-01 X 70824305 70824305 C G ACRC Nonsense_Mutation p.S393* 0.15 TCGA-JX-A3Q0-01 X 73069063 73069063 A G XIST RNA 0.30 TCGA-JX-A3Q0-01 X 73953296 73953296 C T KIAA2022 3'UTR 0.18 TCGA-JX-A3Q0-01 X 76938516 76938516 C T ATRX Missense_Mutation p.M744I 0.28 benign(0.001) TCGA-JX-A3Q0-01 X 79965077 79965077 C T BRWD3 Splice_Site p.X776_splice 0.28 TCGA-JX-A3Q0-01 X 92964389 92964389 G A FAM133A 5'UTR 0.31 TCGA-JX-A3Q0-01 X 99955937 99955937 G A SYTL4 Silent p.I165I 0.26 TCGA-JX-A3Q8-01 10 102672832 102672832 G T FAM178A 5'UTR 0.88 TCGA-JX-A3Q8-01 10 42971108 42971108 T C LINC00839 RNA 0.36 TCGA-JX-A3Q8-01 11 1221821 1221821 C T MUC5AC RNA 0.17 TCGA-JX-A3Q8-01 11 123477438 123477438 C T GRAMD1B Missense_Mutation p.S339L 0.31 deleterious(0.02) benign(0.069) TCGA-JX-A3Q8-01 11 124496383 124496383 T C TBRG1 Missense_Mutation p.C157R 0.31 tolerated(0.16) benign(0.013) TCGA-JX-A3Q8-01 11 132205130 132205130 A T NTM 3'UTR 0.27 TCGA-JX-A3Q8-01 11 18267518 18267518 G A SAA2 Missense_Mutation p.R57W 0.28 tolerated(0.07) benign(0.233) TCGA-JX-A3Q8-01 11 18290819 18290819 C T SAA1 Missense_Mutation p.R57W 0.09 tolerated(0.06) benign(0.262) TCGA-JX-A3Q8-01 11 1902741 1902741 C T LSP1 Missense_Mutation p.R219W 0.33 tolerated_low_confidence(0.19) possibly_damaging(0.487) TCGA-JX-A3Q8-01 11 5322698 5322698 A G OR51B4 Missense_Mutation p.L160P 0.29 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q8-01 11 55563486 55563486 T C OR5D14 Missense_Mutation p.L152P 0.32 tolerated(0.11) benign(0.021) TCGA-JX-A3Q8-01 11 55606424 55606424 A C OR5D16 Missense_Mutation p.N66T 0.30 deleterious(0.01) benign(0.001) TCGA-JX-A3Q8-01 11 55607128 55607128 G A OR5D16 Missense_Mutation p.D301N 0.33 tolerated(0.16) benign(0.008) TCGA-JX-A3Q8-01 12 4657294 4657294 T C RAD51AP1 Missense_Mutation p.M136T 0.28 tolerated(0.4) benign(0.009) TCGA-JX-A3Q8-01 12 54968932 54968932 G A PDE1B Missense_Mutation p.S372N 0.44 deleterious(0.02) benign(0.117) TCGA-JX-A3Q8-01 12 68619364 68619364 A G IL26 Splice_Site p.X57_splice 0.25 TCGA-JX-A3Q8-01 14 73719422 73719422 C T PAPLN Missense_Mutation p.R318C 0.15 tolerated(0.05) possibly_damaging(0.84) TCGA-JX-A3Q8-01 14 91413819 91413819 T G RPS6KA5 Missense_Mutation p.Y157S 0.44 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q8-01 15 44783040 44783040 A G CTDSPL2 Silent p.Q178Q 0.95 TCGA-JX-A3Q8-01 15 50647316 50647316 G C GABPB1 5'UTR 0.27 TCGA-JX-A3Q8-01 16 10721427 10721427 G A TEKT5 3'UTR 0.25 TCGA-JX-A3Q8-01 16 2027624 2027624 G C TBL3 Missense_Mutation p.D618H 0.43 deleterious(0) benign(0.181) TCGA-JX-A3Q8-01 17 34169419 34169419 G T TAF15 Missense_Mutation p.R321I 0.46 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-JX-A3Q8-01 17 40618526 40618526 G C ATP6V0A1 Splice_Site p.X66_splice 0.37 TCGA-JX-A3Q8-01 17 43922788 43922788 C T SPPL2C Silent p.R172R 0.43 TCGA-JX-A3Q8-01 17 67181757 67181757 G A ABCA10 Silent p.I786I 0.26 TCGA-JX-A3Q8-01 17 80972328 80972328 A T B3GNTL1 Splice_Site p.X136_splice 0.24 TCGA-JX-A3Q8-01 19 12799890 12799890 C T FBXW9 3'UTR 0.28 TCGA-JX-A3Q8-01 19 18234034 18234034 C T MAST3 Missense_Mutation p.S107L 0.31 deleterious(0.01) benign(0.173) TCGA-JX-A3Q8-01 19 18378102 18378102 C T KIAA1683 Missense_Mutation p.R83Q 0.19 deleterious(0.01) possibly_damaging(0.829) TCGA-JX-A3Q8-01 19 35849932 35849932 C G FFAR3 Missense_Mutation p.P47R 0.23 deleterious(0) probably_damaging(0.91) TCGA-JX-A3Q8-01 19 40424127 40424127 G C FCGBP Missense_Mutation p.D692E 0.41 benign(0.241) TCGA-JX-A3Q8-01 19 40827757 40827757 G A C19orf47 3'UTR 0.50 TCGA-JX-A3Q8-01 19 40827758 40827758 C A C19orf47 3'UTR 0.50 TCGA-JX-A3Q8-01 19 41601815 41601815 G A CYP2A13 Missense_Mutation p.R485Q 0.32 tolerated(0.06) benign(0.021) TCGA-JX-A3Q8-01 19 42911508 42911508 C G LIPE Missense_Mutation p.G652A 0.52 deleterious(0.02) probably_damaging(0.979) TCGA-JX-A3Q8-01 19 8539121 8539121 G A HNRNPM Silent p.R371R 0.25 TCGA-JX-A3Q8-01 1 11106635 11106635 G A MASP2 Silent p.F130F 0.33 TCGA-JX-A3Q8-01 1 111857195 111857195 A G CHIA Silent p.G97G 0.21 TCGA-JX-A3Q8-01 1 117617918 117617918 G A TTF2 Missense_Mutation p.E238K 0.17 tolerated(0.17) benign(0.015) TCGA-JX-A3Q8-01 1 1177985 1177985 C T FAM132A Silent p.G284G 0.35 TCGA-JX-A3Q8-01 1 15756021 15756021 G C EFHD2 3'UTR 0.18 TCGA-JX-A3Q8-01 1 201184859 201184859 C T IGFN1 Missense_Mutation p.T3063M 0.60 probably_damaging(0.996) TCGA-JX-A3Q8-01 1 203798606 203798606 C T ZC3H11A Missense_Mutation p.P109L 0.51 deleterious(0.04) benign(0.018) TCGA-JX-A3Q8-01 1 223842102 223842102 C G CAPN8 Splice_Site p.X80_splice 0.51 TCGA-JX-A3Q8-01 1 77763549 77763549 T C AK5 Silent p.L206L 0.33 TCGA-JX-A3Q8-01 20 51870650 51870650 G A TSHZ2 Missense_Mutation p.R218Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q8-01 21 31691800 31691800 G A KRTAP26-1 Missense_Mutation p.P185L 0.18 deleterious(0) probably_damaging(1) TCGA-JX-A3Q8-01 21 45826479 45826479 G A TRPM2 Missense_Mutation p.M931I 0.28 tolerated(0.07) possibly_damaging(0.465) TCGA-JX-A3Q8-01 22 21538436 21538436 A G FAM230B RNA 0.33 TCGA-JX-A3Q8-01 22 42973075 42973075 C T SERHL2 3'Flank 0.11 TCGA-JX-A3Q8-01 22 46641057 46641057 G A CDPF1 Missense_Mutation p.R102W 0.50 deleterious(0) probably_damaging(0.912) TCGA-JX-A3Q8-01 2 166846913 166846913 G A SCN1A 3'UTR 0.29 TCGA-JX-A3Q8-01 2 179463400 179463400 C T TTN Intron 0.25 TCGA-JX-A3Q8-01 2 191841666 191841666 G A STAT1 Silent p.V653V 0.24 TCGA-JX-A3Q8-01 2 242149950 242149950 T A ANO7 Missense_Mutation p.I563N 0.15 deleterious(0) possibly_damaging(0.797) TCGA-JX-A3Q8-01 2 27322557 27322557 G C KHK Missense_Mutation p.R279T 0.26 tolerated(1) benign(0.004) TCGA-JX-A3Q8-01 3 10219598 10219598 G A IRAK2 Silent p.T57T 0.45 TCGA-JX-A3Q8-01 3 130095298 130095298 C A COL6A5 Missense_Mutation p.H96N 0.35 deleterious(0) possibly_damaging(0.905) TCGA-JX-A3Q8-01 4 164271435 164271435 G C NPY5R Missense_Mutation p.E4Q 0.54 tolerated(0.09) benign(0.322) TCGA-JX-A3Q8-01 4 2949269 2949269 T A NOP14 Missense_Mutation p.I495F 0.35 tolerated(0.14) probably_damaging(0.965) TCGA-JX-A3Q8-01 4 435740 435740 C G ZNF721 Missense_Mutation p.C839S 0.06 deleterious(0) probably_damaging(1) TCGA-JX-A3Q8-01 4 947120 947120 T G TMEM175 Missense_Mutation p.F202C 0.39 deleterious(0.02) benign(0.111) TCGA-JX-A3Q8-01 5 138209128 138209128 A G LRRTM2 Silent p.Y374Y 0.26 TCGA-JX-A3Q8-01 5 140222840 140222840 A C PCDHA8 Missense_Mutation p.H645P 0.32 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-JX-A3Q8-01 5 89808218 89808218 T C POLR3G 3'UTR 0.31 TCGA-JX-A3Q8-01 6 25479389 25479389 C G LRRC16A Intron 0.14 TCGA-JX-A3Q8-01 6 32908613 32908613 C T HLA-DMB 5'UTR 0.37 TCGA-JX-A3Q8-01 6 62390615 62390615 T A KHDRBS2 3'UTR 0.16 TCGA-JX-A3Q8-01 6 90647929 90647929 C T BACH2 Silent p.A659A 0.17 TCGA-JX-A3Q8-01 7 149318527 149318527 C T ZNF767 RNA 0.37 TCGA-JX-A3Q8-01 7 72742331 72742331 G A FKBP6 5'Flank 0.37 TCGA-JX-A3Q8-01 7 87082375 87082375 C T ABCB4 Missense_Mutation p.A141T 0.40 tolerated(0.32) benign(0.124) TCGA-JX-A3Q8-01 8 108297059 108297060 - GA ANGPT1 Frame_Shift_Ins p.G353Pfs*22 0.13 TCGA-JX-A3Q8-01 8 133885442 133885442 T C TG Missense_Mutation p.F205S 0.13 deleterious(0) probably_damaging(0.983) TCGA-JX-A3Q8-01 8 17823606 17823606 G A PCM1 Missense_Mutation p.R985H 0.08 deleterious(0) probably_damaging(0.984) TCGA-JX-A3Q8-01 8 38003905 38003905 C G STAR Missense_Mutation p.E123Q 0.25 deleterious(0.02) benign(0.182) TCGA-JX-A3Q8-01 8 56436066 56436066 C A XKR4 Silent p.I411I 0.42 TCGA-JX-A3Q8-01 8 67547598 67547598 T A VCPIP1 Missense_Mutation p.D936V 0.11 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q8-01 8 74705427 74705427 A C UBE2W 3'UTR 0.15 TCGA-JX-A3Q8-01 9 127113553 127113553 C T NEK6 3'UTR 0.50 TCGA-JX-A3Q8-01 9 131822885 131822885 G C FAM73B Missense_Mutation p.E284Q 0.52 tolerated(0.37) possibly_damaging(0.846) TCGA-JX-A3Q8-01 9 139272788 139272788 G A SNAPC4 Missense_Mutation p.P1164L 0.18 deleterious(0.02) benign(0.286) TCGA-JX-A3Q8-01 9 139908007 139908007 G A ABCA2 Missense_Mutation p.P1486S 0.63 deleterious(0) probably_damaging(0.999) TCGA-JX-A3Q8-01 X 134994496 134994496 C G SAGE1 Missense_Mutation p.F846L 0.12 deleterious(0.03) probably_damaging(0.979) TCGA-JX-A3Q8-01 X 150840915 150840915 G A PASD1 Silent p.Q566Q 0.37 TCGA-JX-A3Q8-01 X 150840924 150840924 G A PASD1 Silent p.E569E 0.37 TCGA-JX-A3Q8-01 X 153281480 153281480 C A IRAK1 Intron 0.92 TCGA-JX-A3Q8-01 X 153589834 153589834 G A FLNA Missense_Mutation p.P1017S 0.27 deleterious(0.03) possibly_damaging(0.476) TCGA-JX-A3Q8-01 X 32398677 32398677 C T DMD Missense_Mutation p.A1599T 0.41 benign(0.104) TCGA-JX-A5QV-01 10 33559709 33559709 G A NRP1 Silent p.A108A 0.24 TCGA-JX-A5QV-01 10 50966441 50966441 G T OGDHL Silent p.V66V 0.20 TCGA-JX-A5QV-01 10 98408502 98408502 C T PIK3AP1 Missense_Mutation p.V367M 0.44 deleterious(0) probably_damaging(0.961) TCGA-JX-A5QV-01 10 99350069 99350069 C T C10orf62 Missense_Mutation p.R139W 0.34 deleterious(0) possibly_damaging(0.861) TCGA-JX-A5QV-01 11 57585358 57585358 T C CTNND1 3'UTR 0.05 TCGA-JX-A5QV-01 11 70013436 70013436 G A ANO1 Missense_Mutation p.E714K 0.13 deleterious(0.01) benign(0.127) TCGA-JX-A5QV-01 12 121622293 121622293 G A P2RX7 Silent p.R492R 0.34 TCGA-JX-A5QV-01 12 130883528 130883529 - T RIMBP2 3'UTR 0.24 TCGA-JX-A5QV-01 12 132239001 132239001 G A SFSWAP Missense_Mutation p.G471S 0.40 deleterious(0) probably_damaging(1) TCGA-JX-A5QV-01 12 133804466 133804466 C T ANHX Missense_Mutation p.E149K 0.14 tolerated(0.08) benign(0.002) TCGA-JX-A5QV-01 12 19615499 19615499 C T AEBP2 Missense_Mutation p.P243S 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-JX-A5QV-01 12 47629036 47629036 G C PCED1B Missense_Mutation p.G64R 0.22 deleterious(0) probably_damaging(1) TCGA-JX-A5QV-01 12 53566161 53566161 G A CSAD Missense_Mutation p.R132C 0.06 deleterious(0.04) possibly_damaging(0.903) TCGA-JX-A5QV-01 12 85264435 85264435 G A SLC6A15 Silent p.T439T 0.18 TCGA-JX-A5QV-01 12 9265031 9265031 G A A2M Silent p.N124N 0.23 TCGA-JX-A5QV-01 13 46549845 46549845 G C ZC3H13 Missense_Mutation p.R681G 0.25 unknown(0) TCGA-JX-A5QV-01 14 102552230 102552230 C G HSP90AA1 Missense_Mutation p.G254R 0.06 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-JX-A5QV-01 14 96707124 96707124 C T BDKRB2 Silent p.I153I 0.54 TCGA-JX-A5QV-01 15 34112005 34112005 C T RYR3 Silent p.A3585A 0.19 TCGA-JX-A5QV-01 15 42211424 42211424 C T EHD4 Missense_Mutation p.R303Q 0.22 deleterious(0) probably_damaging(0.978) TCGA-JX-A5QV-01 15 45559935 45559935 G A SLC28A2 Silent p.A380A 0.20 TCGA-JX-A5QV-01 15 89421436 89421436 C T HAPLN3 Missense_Mutation p.R283K 0.31 tolerated(0.97) benign(0.004) TCGA-JX-A5QV-01 15 90996413 90996413 C T IQGAP1 Missense_Mutation p.S459L 0.18 deleterious(0.01) benign(0.017) TCGA-JX-A5QV-01 16 2012342 2012342 G A RPS2 Intron 0.15 TCGA-JX-A5QV-01 16 2653460 2653460 G A PDPK1 3'Flank 0.21 TCGA-JX-A5QV-01 17 33592730 33592730 G A SLFN5 Silent p.S833S 0.16 TCGA-JX-A5QV-01 17 35442915 35442916 - TTCTT ACACA 3'UTR 0.30 TCGA-JX-A5QV-01 17 3655127 3655127 G A ITGAE Silent p.P570P 0.21 TCGA-JX-A5QV-01 17 42232292 42232292 C T C17orf53 Silent p.L545L 0.44 TCGA-JX-A5QV-01 17 57776556 57776556 C T PTRH2 5'UTR 0.13 TCGA-JX-A5QV-01 17 63848008 63848008 C T CEP112 Missense_Mutation p.V770I 0.19 tolerated(0.06) benign(0.006) TCGA-JX-A5QV-01 17 73491058 73491058 G A KIAA0195 Missense_Mutation p.E891K 0.16 deleterious(0.01) benign(0.152) TCGA-JX-A5QV-01 18 19093834 19093834 G C GREB1L Missense_Mutation p.E1596D 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-JX-A5QV-01 18 63547856 63547856 G A CDH7 Missense_Mutation p.R695Q 0.37 tolerated(0.09) probably_damaging(0.909) TCGA-JX-A5QV-01 19 12799890 12799890 C T FBXW9 3'UTR 0.25 TCGA-JX-A5QV-01 19 46174549 46174549 C A GIPR Missense_Mutation p.A60D 0.41 deleterious(0.01) benign(0.305) TCGA-JX-A5QV-01 19 46807342 46807342 G A HIF3A Missense_Mutation p.A72T 0.13 tolerated(0.31) benign(0.359) TCGA-JX-A5QV-01 19 48495318 48495318 G C BSPH1 Silent p.L7L 0.18 TCGA-JX-A5QV-01 19 48836562 48836562 G A TMEM143 Missense_Mutation p.P432S 0.41 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-JX-A5QV-01 1 157665836 157665836 C T FCRL3 Missense_Mutation p.V376M 0.19 deleterious(0) probably_damaging(0.95) TCGA-JX-A5QV-01 1 161736153 161736153 G - ATF6 Frame_Shift_Del p.E3Sfs*64 0.11 TCGA-JX-A5QV-01 1 17690266 17690266 C T PADI4 3'UTR 0.19 TCGA-JX-A5QV-01 1 196749069 196749069 A T CFHR3 Missense_Mutation p.K132N 0.44 tolerated(1) benign(0) TCGA-JX-A5QV-01 1 206904595 206904595 G A MAPKAPK2 Missense_Mutation p.V294I 0.13 tolerated(0.13) possibly_damaging(0.656) TCGA-JX-A5QV-01 1 207112633 207112633 G A PIGR Silent p.Y73Y 0.16 TCGA-JX-A5QV-01 1 245866282 245866282 G A KIF26B 3'UTR 0.17 TCGA-JX-A5QV-01 1 67885742 67885742 C T SERBP1 Missense_Mutation p.D316N 0.21 tolerated(0.34) benign(0.115) TCGA-JX-A5QV-01 1 8072187 8072187 T C ERRFI1 3'UTR 0.25 TCGA-JX-A5QV-01 21 16335835 16335835 C A NRIP1 3'UTR 0.38 TCGA-JX-A5QV-01 21 28214746 28214746 C T ADAMTS1 Missense_Mutation p.R330Q 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-JX-A5QV-01 2 145145964 145145964 C T ZEB2 3'UTR 0.18 TCGA-JX-A5QV-01 2 182543231 182543231 C T NEUROD1 Silent p.A119A 0.26 TCGA-JX-A5QV-01 3 136002690 136002690 G A PCCB Silent p.T205T 0.44 TCGA-JX-A5QV-01 3 185638964 185638964 C A TRA2B Missense_Mutation p.R217L 0.06 deleterious(0.01) possibly_damaging(0.726) TCGA-JX-A5QV-01 3 28616706 28616706 G C LINC00693 RNA 0.15 TCGA-JX-A5QV-01 3 73432741 73432741 G A PDZRN3 Silent p.R992R 0.13 TCGA-JX-A5QV-01 4 100570644 100570644 G A RP11-766F14.2 Missense_Mutation p.T1721M 0.32 tolerated(0.18) benign(0.022) TCGA-JX-A5QV-01 5 11199587 11199587 C G CTNND2 Missense_Mutation p.D650H 0.13 deleterious(0) probably_damaging(0.999) TCGA-JX-A5QV-01 5 132029309 132029309 C T KIF3A 3'UTR 0.26 TCGA-JX-A5QV-01 5 140595593 140595593 G A PCDHB13 Missense_Mutation p.R633H 0.22 deleterious_low_confidence(0) benign(0.353) TCGA-JX-A5QV-01 5 53815615 53815615 G T SNX18 Missense_Mutation p.E611D 0.19 tolerated_low_confidence(0.54) benign(0) TCGA-JX-A5QV-01 6 109769091 109769091 C T MICAL1 Missense_Mutation p.R644Q 0.58 tolerated(0.06) benign(0.18) TCGA-JX-A5QV-01 6 43309879 43309879 C T ZNF318 Missense_Mutation p.R1116H 0.28 benign(0.233) TCGA-JX-A5QV-01 7 130021600 130021600 G A CPA1 Missense_Mutation p.V93M 0.20 deleterious(0) possibly_damaging(0.878) TCGA-JX-A5QV-01 7 134678270 134678270 C T AGBL3 Missense_Mutation p.P51S 0.48 deleterious(0.03) probably_damaging(0.983) TCGA-JX-A5QV-01 7 134678382 134678382 G A AGBL3 Missense_Mutation p.R88Q 0.46 deleterious(0.02) probably_damaging(0.983) TCGA-JX-A5QV-01 7 38356866 38356866 G A TRGV9 Missense_Mutation p.R40C 0.28 deleterious(0) probably_damaging(0.96) TCGA-JX-A5QV-01 7 73471762 73471762 G A ELN Intron 0.22 TCGA-JX-A5QV-01 7 88964910 88964910 C T ZNF804B Nonsense_Mutation p.Q872* 0.41 TCGA-JX-A5QV-01 9 134501771 134501771 G A RAPGEF1 Missense_Mutation p.L415F 0.12 deleterious(0) probably_damaging(0.999) TCGA-JX-A5QV-01 9 139108447 139108447 C T QSOX2 Missense_Mutation p.R403Q 0.50 tolerated(0.1) benign(0.07) TCGA-JX-A5QV-01 9 71623402 71623402 G A PIP5K1B 3'UTR 0.40 TCGA-JX-A5QV-01 X 106893888 106893888 C T PRPS1 3'UTR 0.21 TCGA-JX-A5QV-01 X 129171479 129171479 C T BCORL1 Silent p.N1481N 0.52 TCGA-JX-A5QV-01 X 153069983 153069983 G T PDZD4 Silent p.R379R 0.59 TCGA-JX-A5QV-01 X 56590601 56590601 C T UBQLN2 Missense_Mutation p.H99Y 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-JX-A5QV-01 X 69478492 69478492 G A P2RY4 Missense_Mutation p.P328L 0.48 tolerated(0.13) benign(0.001) TCGA-JX-A5QV-01 X 8433536 8433536 G A VCX3B Silent p.K15K 0.03 TCGA-LP-A4AU-01 10 104574833 104574833 G A WBP1L 3'UTR 0.14 TCGA-LP-A4AU-01 10 104574836 104574836 T G WBP1L 3'UTR 0.14 TCGA-LP-A4AU-01 10 105007534 105007534 C T RPEL1 3'UTR 0.13 TCGA-LP-A4AU-01 10 70715940 70715940 G A DDX21 5'UTR 0.56 TCGA-LP-A4AU-01 10 76910349 76910349 G A SAMD8 Silent p.L21L 0.17 TCGA-LP-A4AU-01 10 94221001 94221001 C T IDE Missense_Mutation p.E924K 0.08 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AU-01 11 1079662 1079662 G A MUC2 Silent p.K293K 0.12 TCGA-LP-A4AU-01 11 48327879 48327879 C G OR4S1 Silent p.L35L 0.11 TCGA-LP-A4AU-01 11 55735343 55735343 C T OR10AG1 Silent p.T199T 0.13 TCGA-LP-A4AU-01 11 64421184 64421184 G A NRXN2 Silent p.R800R 0.22 TCGA-LP-A4AU-01 11 70282254 70282254 C T CTTN Intron 0.22 TCGA-LP-A4AU-01 12 19671105 19671105 C T AEBP2 Intron 0.08 TCGA-LP-A4AU-01 12 27787858 27787858 A G PPFIBP1 Missense_Mutation p.E27G 0.09 deleterious(0.02) probably_damaging(0.989) TCGA-LP-A4AU-01 14 20916288 20916288 C T OSGEP Missense_Mutation p.E227K 0.10 deleterious(0.02) possibly_damaging(0.719) TCGA-LP-A4AU-01 14 64938857 64938857 G A AKAP5 3'UTR 0.15 TCGA-LP-A4AU-01 15 28463704 28463704 T G HERC2 Missense_Mutation p.S1987R 0.17 benign(0.028) TCGA-LP-A4AU-01 15 66187776 66187776 C T MEGF11 3'UTR 0.12 TCGA-LP-A4AU-01 15 90796483 90796483 C T TTLL13 Missense_Mutation p.R101C 0.15 deleterious(0.01) benign(0.063) TCGA-LP-A4AU-01 16 56678656 56678656 A G MT1A 3'Flank 0.04 TCGA-LP-A4AU-01 16 57168731 57168731 C T CPNE2 Silent p.F387F 0.11 TCGA-LP-A4AU-01 16 67680869 67680869 G A RLTPR Missense_Mutation p.G202S 0.23 tolerated(0.28) benign(0.008) TCGA-LP-A4AU-01 17 27047756 27047756 G A RPL23A Silent p.A19A 0.16 TCGA-LP-A4AU-01 17 40266039 40266039 C T KAT2A Missense_Mutation p.E767K 0.16 deleterious(0) benign(0.267) TCGA-LP-A4AU-01 17 4836867 4836867 G A GP1BA Nonsense_Mutation p.W323* 0.10 TCGA-LP-A4AU-01 17 48625393 48625393 C T SPATA20 Intron 0.17 TCGA-LP-A4AU-01 17 73497691 73497691 G A CASKIN2 Missense_Mutation p.R1126C 0.12 tolerated(0.14) probably_damaging(0.991) TCGA-LP-A4AU-01 18 22805422 22805422 C T ZNF521 Silent p.A820A 0.12 TCGA-LP-A4AU-01 18 46623793 46623793 C T DYM Silent p.A613A 0.13 TCGA-LP-A4AU-01 19 10747232 10747232 G A SLC44A2 Silent p.P489P 0.14 TCGA-LP-A4AU-01 19 16636365 16636365 C T CHERP Missense_Mutation p.D477N 0.25 tolerated_low_confidence(0.05) benign(0.284) TCGA-LP-A4AU-01 19 22784281 22784281 G - AC011467.1 5'Flank 0.10 TCGA-LP-A4AU-01 19 31039377 31039377 G A ZNF536 Missense_Mutation p.G951R 0.21 tolerated(0.36) benign(0.013) TCGA-LP-A4AU-01 19 34292075 34292075 G A KCTD15 Missense_Mutation p.G24R 0.09 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-LP-A4AU-01 19 38897559 38897559 G A FAM98C Missense_Mutation p.E254K 0.15 tolerated(0.2) benign(0.023) TCGA-LP-A4AU-01 19 44981356 44981356 G C ZNF180 Missense_Mutation p.Q448E 0.10 tolerated(0.25) benign(0.183) TCGA-LP-A4AU-01 1 145534935 145534935 G A ITGA10 Missense_Mutation p.R613Q 0.19 tolerated(0.36) benign(0.228) TCGA-LP-A4AU-01 1 151076068 151076068 C G GABPB2 Nonsense_Mutation p.S218* 0.11 TCGA-LP-A4AU-01 1 154401907 154401907 C T IL6R Silent p.H107H 0.09 TCGA-LP-A4AU-01 1 202828216 202828216 G A RP11-480I12.7 5'Flank 0.12 TCGA-LP-A4AU-01 1 223465828 223465828 C T SUSD4 Missense_Mutation p.G105E 0.09 tolerated(0.07) probably_damaging(1) TCGA-LP-A4AU-01 1 247201343 247201343 C G ZNF670 Missense_Mutation p.G193A 0.09 deleterious(0.02) benign(0.316) TCGA-LP-A4AU-01 1 3548838 3548838 C T WRAP73 Silent p.P329P 0.07 TCGA-LP-A4AU-01 1 39789874 39789874 G A MACF1 Missense_Mutation p.E1421K 0.28 probably_damaging(0.958) TCGA-LP-A4AU-01 1 41236446 41236446 C T NFYC Silent p.I337I 0.06 TCGA-LP-A4AU-01 1 50661260 50661260 G A ELAVL4 Missense_Mutation p.R196H 0.21 deleterious(0.02) possibly_damaging(0.458) TCGA-LP-A4AU-01 1 53072514 53072514 G A GPX7 Silent p.E99E 0.11 TCGA-LP-A4AU-01 20 16488605 16488605 G A KIF16B Nonsense_Mutation p.Q233* 0.09 TCGA-LP-A4AU-01 20 31695549 31695549 G A BPIFB4 Splice_Site p.X582_splice 0.14 TCGA-LP-A4AU-01 20 50287703 50287703 C T ATP9A Silent p.T377T 0.17 TCGA-LP-A4AU-01 22 42128332 42128332 G A MEI1 Missense_Mutation p.A394T 0.08 tolerated(1) benign(0.011) TCGA-LP-A4AU-01 2 138434265 138434265 C T THSD7B 3'UTR 0.19 TCGA-LP-A4AU-01 2 174774850 174774850 G A SP3 Missense_Mutation p.A722V 0.14 tolerated(0.26) benign(0.007) TCGA-LP-A4AU-01 2 179989222 179989222 C T SESTD1 Missense_Mutation p.E346K 0.09 tolerated(0.1) probably_damaging(0.971) TCGA-LP-A4AU-01 2 25384197 25384197 C T POMC Missense_Mutation p.R186Q 0.11 tolerated(0.63) benign(0.023) TCGA-LP-A4AU-01 2 75061514 75061514 C G HK2 5'UTR 0.21 TCGA-LP-A4AU-01 2 9540884 9540884 A C ASAP2 Silent p.A916A 0.07 TCGA-LP-A4AU-01 3 137787115 137787115 G A DZIP1L Silent p.P570P 0.14 TCGA-LP-A4AU-01 3 167284626 167284626 G C WDR49 Intron 0.08 TCGA-LP-A4AU-01 3 47049909 47049909 C T NBEAL2 Missense_Mutation p.A2619V 0.12 tolerated(0.6) benign(0.002) TCGA-LP-A4AU-01 3 49059635 49059635 C T NDUFAF3 Missense_Mutation p.P20S 0.33 tolerated(0.48) benign(0.002) TCGA-LP-A4AU-01 3 65341985 65341985 A C MAGI1 3'Flank 0.11 TCGA-LP-A4AU-01 4 41628893 41628893 G A LIMCH1 Intron 0.17 TCGA-LP-A4AU-01 5 112179351 112179351 C T APC Missense_Mutation p.S2687L 0.11 benign(0.007) TCGA-LP-A4AU-01 5 140799031 140799031 C T PCDHGB7 Silent p.R535R 0.10 TCGA-LP-A4AU-01 5 176884662 176884662 G A DBN1 Missense_Mutation p.P627S 0.14 deleterious(0) probably_damaging(1) TCGA-LP-A4AU-01 5 38954960 38954960 T C RICTOR Silent p.L871L 0.12 TCGA-LP-A4AU-01 6 167754940 167754940 C T TTLL2 Missense_Mutation p.H518Y 0.09 tolerated(0.87) benign(0.041) TCGA-LP-A4AU-01 6 32006938 32006938 C T CYP21A2 Silent p.H120H 0.17 TCGA-LP-A4AU-01 6 33281175 33281175 G C TAPBP Missense_Mutation p.F96L 0.38 deleterious(0.01) benign(0.261) TCGA-LP-A4AU-01 6 86199239 86199239 G A NT5E Missense_Mutation p.E378K 0.16 tolerated(0.26) benign(0.014) TCGA-LP-A4AU-01 7 156432533 156432533 G C C7orf13 3'UTR 0.18 TCGA-LP-A4AU-01 7 38357067 38357067 C T TRGV9 Silent p.T9T 0.24 TCGA-LP-A4AU-01 8 12943867 12943867 G T DLC1 Silent p.S1466S 0.39 TCGA-LP-A4AU-01 8 95677406 95677406 T G ESRP1 Missense_Mutation p.F305V 0.10 deleterious(0) probably_damaging(0.995) TCGA-LP-A4AU-01 9 111701696 111701696 G - FAM206A Frame_Shift_Del p.E124Kfs*33 0.14 TCGA-LP-A4AU-01 X 110495670 110495670 G C CAPN6 Missense_Mutation p.D188E 0.06 deleterious(0) probably_damaging(0.918) TCGA-LP-A4AU-01 X 129139195 129139195 G A BCORL1 5'UTR 0.19 TCGA-LP-A4AU-01 X 13775835 13775835 G A OFD1 Missense_Mutation p.E490K 0.14 deleterious(0.02) benign(0.197) TCGA-LP-A4AU-01 X 21581385 21581385 G C CNKSR2 Missense_Mutation p.E475Q 0.15 deleterious(0.03) possibly_damaging(0.756) TCGA-LP-A4AU-01 X 23414897 23414897 G A PTCHD1 3'UTR 0.12 TCGA-LP-A4AU-01 X 73046776 73046776 C T XIST RNA 0.13 TCGA-LP-A4AU-01 X 83351215 83351215 G A RPS6KA6 Missense_Mutation p.S653L 0.14 deleterious(0.02) probably_damaging(0.984) TCGA-LP-A4AU-01 X 99661981 99661981 C T PCDH19 Missense_Mutation p.G539S 0.23 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 10 104353761 104353761 C T SUFU Missense_Mutation p.P232L 0.33 tolerated(0.07) benign(0.031) TCGA-LP-A4AV-01 10 112839110 112839110 C T ADRA2A Silent p.F452F 0.56 TCGA-LP-A4AV-01 10 124348535 124348535 G A DMBT1 Missense_Mutation p.R620Q 0.37 tolerated(1) unknown(0) TCGA-LP-A4AV-01 10 124399643 124399643 C T DMBT1 Missense_Mutation p.H2215Y 0.28 deleterious(0.01) probably_damaging(0.932) TCGA-LP-A4AV-01 10 13852835 13852835 C T FRMD4A Missense_Mutation p.G62E 0.34 deleterious(0) probably_damaging(0.974) TCGA-LP-A4AV-01 10 1779303 1779303 C T ADARB2 Silent p.L14L 0.41 TCGA-LP-A4AV-01 10 18331702 18331702 G A SLC39A12 Silent p.L672L 0.20 TCGA-LP-A4AV-01 10 26305765 26305765 C T MYO3A Silent p.L175L 0.35 TCGA-LP-A4AV-01 10 29704295 29704295 G C PTCHD3P1 RNA 0.33 TCGA-LP-A4AV-01 10 33123816 33123816 G C C10ORF68 Missense_Mutation p.K385N 0.27 tolerated(0.08) probably_damaging(0.978) TCGA-LP-A4AV-01 10 35349897 35349897 C T CUL2 Splice_Site p.X94_splice 0.14 TCGA-LP-A4AV-01 10 35500834 35500834 C G CREM 3'UTR 0.48 TCGA-LP-A4AV-01 10 35500973 35500973 C G CREM 3'UTR 0.39 TCGA-LP-A4AV-01 10 35501397 35501397 C T CREM 3'UTR 0.60 TCGA-LP-A4AV-01 10 35501508 35501508 C G CREM 3'UTR 0.62 TCGA-LP-A4AV-01 10 35501824 35501824 C G CREM 3'UTR 0.29 TCGA-LP-A4AV-01 10 3821734 3821734 G C KLF6 Silent p.L283L 0.40 TCGA-LP-A4AV-01 10 3823849 3823849 G T KLF6 Missense_Mutation p.H220Q 0.36 deleterious(0) unknown(0) TCGA-LP-A4AV-01 10 5683875 5683875 C T ASB13 Silent p.A189A 0.36 TCGA-LP-A4AV-01 10 5788139 5788139 C T FAM208B Intron 0.30 TCGA-LP-A4AV-01 10 68687183 68687183 G C LRRTM3 Missense_Mutation p.R170T 0.60 tolerated(0.19) benign(0.145) TCGA-LP-A4AV-01 10 71007183 71007183 G A HKDC1 Missense_Mutation p.D367N 0.42 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 10 72633155 72633155 G A SGPL1 Silent p.K369K 0.36 TCGA-LP-A4AV-01 10 73574925 73574925 G A CDH23 Missense_Mutation p.E1079K 0.15 tolerated_low_confidence(0.87) benign(0.023) TCGA-LP-A4AV-01 10 76818104 76818104 C T DUPD1 Missense_Mutation p.E57K 0.35 deleterious(0) possibly_damaging(0.867) TCGA-LP-A4AV-01 10 81074886 81074886 G C ZMIZ1 3'UTR 0.36 TCGA-LP-A4AV-01 10 90773980 90773980 G A FAS Missense_Mutation p.E261K 0.19 deleterious(0.01) probably_damaging(0.961) TCGA-LP-A4AV-01 10 96493117 96493117 G A CYP2C18 Missense_Mutation p.E405K 0.30 tolerated(0.17) benign(0.017) TCGA-LP-A4AV-01 11 107965208 107965208 G A CUL5 Missense_Mutation p.E512K 0.44 tolerated(0.37) benign(0.006) TCGA-LP-A4AV-01 11 111954792 111954792 G C C11orf57 3'UTR 0.50 TCGA-LP-A4AV-01 11 111954905 111954905 G A C11orf57 3'UTR 0.50 TCGA-LP-A4AV-01 11 113661405 113661405 C G ATF4P4 RNA 0.38 TCGA-LP-A4AV-01 11 118766402 118766402 C T BCL9L 3'UTR 0.45 TCGA-LP-A4AV-01 11 118766519 118766519 C T BCL9L 3'UTR 0.33 TCGA-LP-A4AV-01 11 119549182 119549182 C T PVRL1 Missense_Mutation p.E125K 0.33 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 11 120312487 120312487 C G ARHGEF12 Missense_Mutation p.F388L 0.41 tolerated(0.2) possibly_damaging(0.533) TCGA-LP-A4AV-01 11 120317654 120317654 C T ARHGEF12 Intron 0.26 TCGA-LP-A4AV-01 11 120318967 120318967 C G ARHGEF12 Silent p.L549L 0.50 TCGA-LP-A4AV-01 11 120348212 120348212 C A ARHGEF12 Nonsense_Mutation p.S1170* 0.35 TCGA-LP-A4AV-01 11 18434310 18434310 G A LDHC Missense_Mutation p.D16N 0.38 tolerated(0.11) benign(0.07) TCGA-LP-A4AV-01 11 247306 247306 C T PSMD13 Silent p.L144L 0.41 TCGA-LP-A4AV-01 11 27680868 27680868 C T BDNF Intron 0.47 TCGA-LP-A4AV-01 11 27681051 27681051 C G BDNF Intron 0.40 TCGA-LP-A4AV-01 11 33694307 33694307 G A KIAA1549L 3'UTR 0.32 TCGA-LP-A4AV-01 11 533515 533515 C T HRAS Missense_Mutation p.A130T 0.62 deleterious(0) possibly_damaging(0.728) TCGA-LP-A4AV-01 11 57466157 57466157 C G ZDHHC5 Missense_Mutation p.H417D 0.22 tolerated(0.18) benign(0.031) TCGA-LP-A4AV-01 11 63410919 63410919 G A ATL3 Missense_Mutation p.H254Y 0.50 deleterious(0.03) benign(0.284) TCGA-LP-A4AV-01 11 64006193 64006193 G A VEGFB 3'UTR 0.30 TCGA-LP-A4AV-01 11 64006258 64006258 G A VEGFB 3'UTR 0.34 TCGA-LP-A4AV-01 11 64012107 64012107 G C PPP1R14B 3'UTR 0.53 TCGA-LP-A4AV-01 11 64051746 64051746 G C BAD Nonsense_Mutation p.S32* 0.29 TCGA-LP-A4AV-01 11 65268821 65268821 C G MALAT1 RNA 0.23 TCGA-LP-A4AV-01 11 65269862 65269862 C G MALAT1 RNA 0.50 TCGA-LP-A4AV-01 11 65270585 65270585 C T MALAT1 RNA 0.28 TCGA-LP-A4AV-01 11 65271612 65271612 C A MALAT1 RNA 0.18 TCGA-LP-A4AV-01 11 65271929 65271929 C T MALAT1 RNA 0.23 TCGA-LP-A4AV-01 11 65272219 65272219 C G MALAT1 RNA 0.19 TCGA-LP-A4AV-01 11 65273023 65273023 C G MALAT1 RNA 0.20 TCGA-LP-A4AV-01 11 65273470 65273470 C G MALAT1 RNA 0.38 TCGA-LP-A4AV-01 11 65421813 65421813 C T RELA 3'UTR 0.22 TCGA-LP-A4AV-01 11 65830913 65830913 G A SF3B2 Missense_Mutation p.E710K 0.43 deleterious(0.04) benign(0.016) TCGA-LP-A4AV-01 11 66325600 66325600 G A CTD-3074O7.2 3'Flank 0.29 TCGA-LP-A4AV-01 11 71719762 71719762 C T NUMA1 Missense_Mutation p.E1730K 0.39 probably_damaging(0.998) TCGA-LP-A4AV-01 11 73021844 73021844 G A ARHGEF17 Missense_Mutation p.E721K 0.37 deleterious_low_confidence(0.01) benign(0.078) TCGA-LP-A4AV-01 11 77830290 77830290 G A ALG8 Missense_Mutation p.H162Y 0.38 deleterious(0) probably_damaging(0.983) TCGA-LP-A4AV-01 11 85445098 85445098 G A SYTL2 Missense_Mutation p.S424L 0.38 tolerated(0.31) benign(0.003) TCGA-LP-A4AV-01 11 89443815 89443815 C G TRIM77 Missense_Mutation p.Q117E 0.37 tolerated(0.8) benign(0.095) TCGA-LP-A4AV-01 11 92616455 92616455 G A FAT3 Missense_Mutation p.R4278Q 0.38 probably_damaging(0.995) TCGA-LP-A4AV-01 12 101017746 101017746 C G GAS2L3 Nonsense_Mutation p.S388* 0.24 TCGA-LP-A4AV-01 12 113285528 113285528 C A RPH3A Silent p.P37P 0.40 TCGA-LP-A4AV-01 12 120535031 120535031 G A RAB35 3'UTR 0.36 TCGA-LP-A4AV-01 12 121125268 121125268 G C MLEC Missense_Mutation p.E57Q 0.57 tolerated(0.08) benign(0.19) TCGA-LP-A4AV-01 12 123893467 123893467 C A SETD8 3'UTR 0.41 TCGA-LP-A4AV-01 12 133502070 133502070 C T ZNF605 Missense_Mutation p.M636I 0.22 tolerated(1) benign(0.004) TCGA-LP-A4AV-01 12 14993509 14993509 G C ART4 Silent p.L241L 0.50 TCGA-LP-A4AV-01 12 14995906 14995906 C T ART4 Missense_Mutation p.E48K 0.25 tolerated(0.11) benign(0.076) TCGA-LP-A4AV-01 12 1897454 1897454 C G ADIPOR2 3'UTR 0.28 TCGA-LP-A4AV-01 12 22811985 22811985 C T ETNK1 Missense_Mutation p.H241Y 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-LP-A4AV-01 12 3120170 3120170 G T TEAD4 Missense_Mutation p.G76V 0.22 deleterious(0) probably_damaging(0.996) TCGA-LP-A4AV-01 12 4459046 4459046 C G C12orf5 Nonsense_Mutation p.S85* 0.28 TCGA-LP-A4AV-01 12 48177512 48177512 C T HDAC7 3'UTR 0.21 TCGA-LP-A4AV-01 12 49498592 49498592 C T LMBR1L Missense_Mutation p.E90K 0.29 deleterious(0) probably_damaging(0.998) TCGA-LP-A4AV-01 12 50856379 50856379 G A LARP4 Missense_Mutation p.R450K 0.19 tolerated(0.11) possibly_damaging(0.646) TCGA-LP-A4AV-01 12 51133261 51133261 G A DIP2B Missense_Mutation p.D1416N 0.18 tolerated(0.05) benign(0.119) TCGA-LP-A4AV-01 12 52213324 52213324 G A RP11-923I11.6 RNA 0.26 TCGA-LP-A4AV-01 12 53839824 53839824 C T PRR13 Missense_Mutation p.S143F 0.31 tolerated_low_confidence(0.72) unknown(0) TCGA-LP-A4AV-01 12 56863491 56863491 C T SPRYD4 3'UTR 0.38 TCGA-LP-A4AV-01 12 56872959 56872959 C G GLS2 Silent p.V137V 0.38 TCGA-LP-A4AV-01 12 662367 662367 G - B4GALNT3 Frame_Shift_Del p.E427Kfs*4 0.30 TCGA-LP-A4AV-01 12 81839340 81839340 C T PPFIA2 Missense_Mutation p.E189K 0.47 deleterious(0) probably_damaging(0.966) TCGA-LP-A4AV-01 12 96374348 96374348 G A HAL Missense_Mutation p.T502M 0.28 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AV-01 13 20567387 20567387 G A ZMYM2 Missense_Mutation p.D59N 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-LP-A4AV-01 13 26927915 26927915 G A CDK8 Silent p.K118K 0.44 TCGA-LP-A4AV-01 13 33232590 33232590 C T PDS5B Missense_Mutation p.S140L 0.17 deleterious(0) possibly_damaging(0.542) TCGA-LP-A4AV-01 13 38266158 38266158 C T TRPC4 Nonsense_Mutation p.W404* 0.33 TCGA-LP-A4AV-01 13 39455660 39455660 G A FREM2 3'UTR 0.35 TCGA-LP-A4AV-01 13 51961658 51961658 G A INTS6 Missense_Mutation p.S253L 0.44 tolerated(0.53) benign(0) TCGA-LP-A4AV-01 13 96234549 96234549 G C DZIP1 Nonsense_Mutation p.S848* 0.28 TCGA-LP-A4AV-01 14 101349520 101349520 G A RTL1 Missense_Mutation p.R536C 0.38 deleterious(0.01) benign(0.203) TCGA-LP-A4AV-01 14 102798158 102798158 C T ZNF839 Missense_Mutation p.S464L 0.31 tolerated(0.7) benign(0.418) TCGA-LP-A4AV-01 14 102873791 102873791 G C TECPR2 Silent p.G112G 0.27 TCGA-LP-A4AV-01 14 106962976 106962976 C T IGHV1-45 Silent p.L102L 0.35 TCGA-LP-A4AV-01 14 22134061 22134061 C G OR4E2 Missense_Mutation p.I255M 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-LP-A4AV-01 14 24652265 24652265 G A IPO4 Missense_Mutation p.R780C 0.29 deleterious(0) possibly_damaging(0.582) TCGA-LP-A4AV-01 14 24909401 24909401 C T SDR39U1 Missense_Mutation p.R257H 0.44 deleterious(0) probably_damaging(0.993) TCGA-LP-A4AV-01 14 32295840 32295840 G A NUBPL Missense_Mutation p.V205M 0.60 deleterious(0.01) probably_damaging(0.92) TCGA-LP-A4AV-01 14 51716416 51716416 G A TMX1 Missense_Mutation p.M199I 0.17 tolerated(0.41) benign(0.007) TCGA-LP-A4AV-01 14 54420098 54420098 G A BMP4 5'UTR 0.33 TCGA-LP-A4AV-01 14 55643784 55643784 C T DLGAP5 Missense_Mutation p.E349K 0.23 tolerated(0.1) benign(0.285) TCGA-LP-A4AV-01 14 64610593 64610593 G A SYNE2 Missense_Mutation p.R5137K 0.27 possibly_damaging(0.775) TCGA-LP-A4AV-01 14 68229100 68229100 G A ZFYVE26 Silent p.T2063T 0.53 TCGA-LP-A4AV-01 14 70512621 70512621 G A SLC8A3 3'UTR 0.30 TCGA-LP-A4AV-01 14 75150065 75150065 C T AREL1 Missense_Mutation p.E139K 0.27 tolerated(0.83) benign(0.009) TCGA-LP-A4AV-01 14 76135834 76135835 - A TTLL5 Frame_Shift_Ins p.T51Nfs*7 0.24 TCGA-LP-A4AV-01 14 77977150 77977150 C T SPTLC2 3'UTR 0.56 TCGA-LP-A4AV-01 14 91808753 91808753 G A CCDC88C Nonsense_Mutation p.Q152* 0.22 TCGA-LP-A4AV-01 15 25458629 25458629 G A SNORD115-22 3'Flank 0.40 TCGA-LP-A4AV-01 15 33927942 33927942 C T RYR3 Silent p.V1101V 0.33 TCGA-LP-A4AV-01 15 33941395 33941395 G A RYR3 Silent p.V1367V 0.29 TCGA-LP-A4AV-01 15 41795048 41795048 G A ITPKA Silent p.R391R 0.39 TCGA-LP-A4AV-01 15 42058330 42058330 C G MGA Missense_Mutation p.L2684V 0.32 tolerated(0.22) benign(0.171) TCGA-LP-A4AV-01 15 43813622 43813622 C T MAP1A 5'UTR 0.20 TCGA-LP-A4AV-01 15 48065344 48065344 G A SEMA6D 3'UTR 0.33 TCGA-LP-A4AV-01 15 50489719 50489719 G C SLC27A2 Missense_Mutation p.E167D 0.31 tolerated(0.18) benign(0.107) TCGA-LP-A4AV-01 15 63111741 63111741 C G TLN2 Missense_Mutation p.F2266L 0.56 tolerated(0.37) benign(0) TCGA-LP-A4AV-01 15 66021429 66021429 C G DENND4A Missense_Mutation p.D490H 0.33 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 15 68582061 68582061 C T FEM1B Missense_Mutation p.S122L 0.34 deleterious(0) probably_damaging(0.998) TCGA-LP-A4AV-01 15 72020903 72020903 C T THSD4 Missense_Mutation p.S458F 0.24 deleterious(0) possibly_damaging(0.905) TCGA-LP-A4AV-01 15 72410063 72410063 G A MYO9A 5'UTR 0.30 TCGA-LP-A4AV-01 15 74166088 74166088 G A TBC1D21 Missense_Mutation p.R13K 0.32 tolerated_low_confidence(0.36) benign(0.002) TCGA-LP-A4AV-01 15 74564043 74564043 G A CCDC33 Splice_Site p.X183_splice 0.48 TCGA-LP-A4AV-01 15 77907516 77907516 C G LINGO1 Missense_Mutation p.E245Q 0.24 tolerated(0.07) benign(0.388) TCGA-LP-A4AV-01 15 79068583 79068583 T A ADAMTS7 Silent p.S551S 0.27 TCGA-LP-A4AV-01 15 79165368 79165368 G A MORF4L1 Silent p.P3P 0.40 TCGA-LP-A4AV-01 15 79585660 79585660 G T ANKRD34C Nonsense_Mutation p.G12* 0.31 TCGA-LP-A4AV-01 15 82934883 82934883 C T GOLGA6L18 Missense_Mutation p.E233K 0.12 deleterious(0.04) unknown(0) TCGA-LP-A4AV-01 15 83438506 83438506 C T FSD2 Missense_Mutation p.M466I 0.41 tolerated(0.05) benign(0.028) TCGA-LP-A4AV-01 15 90189155 90189155 C T KIF7 Missense_Mutation p.E631K 0.36 tolerated(0.74) benign(0.034) TCGA-LP-A4AV-01 16 19179827 19179827 C T SYT17 5'UTR 0.53 TCGA-LP-A4AV-01 16 19884105 19884105 G A GPRC5B Silent p.F21F 0.50 TCGA-LP-A4AV-01 16 20808273 20808273 G C ACSM3 Missense_Mutation p.K580N 0.39 tolerated(0.71) benign(0.048) TCGA-LP-A4AV-01 16 21082114 21082114 G A DNAH3 Nonsense_Mutation p.Q1040* 0.33 TCGA-LP-A4AV-01 16 22268579 22268579 C T EEF2K Silent p.F258F 0.35 TCGA-LP-A4AV-01 16 28597034 28597034 G A CCDC101 Missense_Mutation p.E73K 0.24 deleterious(0.01) benign(0.17) TCGA-LP-A4AV-01 16 29918094 29918094 G A KCTD13 3'UTR 0.29 TCGA-LP-A4AV-01 16 2998891 2998891 C G FLYWCH1 3'UTR 0.42 TCGA-LP-A4AV-01 16 30681946 30681946 C T FBRS 3'UTR 0.27 TCGA-LP-A4AV-01 16 3536030 3536030 C A NAA60 3'UTR 0.75 TCGA-LP-A4AV-01 16 3788618 3788618 G A CREBBP Missense_Mutation p.R1446C 0.48 unknown(0) TCGA-LP-A4AV-01 16 48227826 48227826 G T ABCC11 Missense_Mutation p.F824L 0.21 tolerated(0.65) benign(0.021) TCGA-LP-A4AV-01 16 53189935 53189935 C G CHD9 5'UTR 0.42 TCGA-LP-A4AV-01 16 66958750 66958750 G T RRAD Missense_Mutation p.F111L 0.25 deleterious(0.01) possibly_damaging(0.786) TCGA-LP-A4AV-01 16 67904825 67904825 C T NUTF2 3'UTR 0.27 TCGA-LP-A4AV-01 16 67917564 67917564 C T EDC4 Nonsense_Mutation p.Q1315* 0.60 TCGA-LP-A4AV-01 16 67917781 67917781 C G EDC4 Intron 0.37 TCGA-LP-A4AV-01 16 70010732 70010732 G A PDXDC2P RNA 0.18 TCGA-LP-A4AV-01 16 87734169 87734169 G A FLJ00104 3'UTR 0.40 TCGA-LP-A4AV-01 16 87734572 87734572 G T FLJ00104 3'UTR 0.28 TCGA-LP-A4AV-01 16 89784087 89784087 G A VPS9D1 Intron 0.16 TCGA-LP-A4AV-01 17 10215384 10215384 C A MYH13 Nonsense_Mutation p.E1459* 0.50 TCGA-LP-A4AV-01 17 19290087 19290087 C A MFAP4 Missense_Mutation p.G48V 0.50 tolerated(0.1) benign(0.007) TCGA-LP-A4AV-01 17 26692212 26692212 G A VTN 3'Flank 0.40 TCGA-LP-A4AV-01 17 33806541 33806541 C T SLFN12L Missense_Mutation p.E230K 0.31 tolerated(0.34) benign(0.028) TCGA-LP-A4AV-01 17 37370527 37370527 G C STAC2 Silent p.L300L 0.16 TCGA-LP-A4AV-01 17 3806895 3806895 G A P2RX1 Silent p.F185F 0.31 TCGA-LP-A4AV-01 17 38324645 38324645 C G CASC3 Missense_Mutation p.P647R 0.32 tolerated_low_confidence(0.06) probably_damaging(0.972) TCGA-LP-A4AV-01 17 40094955 40094955 G A TTC25 RNA 0.33 TCGA-LP-A4AV-01 17 40717674 40717674 C T COASY Intron 0.22 TCGA-LP-A4AV-01 17 40825805 40825805 G A PLEKHH3 Missense_Mutation p.P116S 0.30 tolerated(0.15) unknown(0) TCGA-LP-A4AV-01 17 40828531 40828531 G A PLEKHH3 Silent p.F17F 0.48 TCGA-LP-A4AV-01 17 40946853 40946853 C G WNK4 Missense_Mutation p.S805C 0.36 deleterious(0.02) unknown(0) TCGA-LP-A4AV-01 17 41132190 41132190 G C PTGES3L Missense_Mutation p.L4V 0.34 tolerated_low_confidence(0.15) benign(0.005) TCGA-LP-A4AV-01 17 41223131 41223131 C T BRCA1 Silent p.L1621L 0.24 TCGA-LP-A4AV-01 17 42268851 42268851 C T TMUB2 3'UTR 0.14 TCGA-LP-A4AV-01 17 43196206 43196206 G A PLCD3 Nonsense_Mutation p.Q297* 0.37 TCGA-LP-A4AV-01 17 43473916 43473916 C G ARHGAP27 Missense_Mutation p.E363Q 0.55 tolerated(0.66) benign(0.055) TCGA-LP-A4AV-01 17 43507519 43507519 C T ARHGAP27 5'Flank 0.43 TCGA-LP-A4AV-01 17 44626600 44626600 G A LRRC37A2 Silent p.L1365L 0.17 TCGA-LP-A4AV-01 17 45369886 45369886 G A ITGB3 Missense_Mutation p.E548K 0.39 deleterious(0) possibly_damaging(0.732) TCGA-LP-A4AV-01 17 46801809 46801809 C T PRAC1 5'Flank 0.35 TCGA-LP-A4AV-01 17 47869285 47869285 C T KAT7 Missense_Mutation p.S18F 0.39 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-LP-A4AV-01 17 48246517 48246517 G A SGCA Missense_Mutation p.D217N 0.42 deleterious(0.05) benign(0.42) TCGA-LP-A4AV-01 17 48264089 48264089 G A COL1A1 Silent p.I1242I 0.32 TCGA-LP-A4AV-01 17 57776432 57776432 G A PTRH2 5'UTR 0.37 TCGA-LP-A4AV-01 17 57941134 57941134 G A TUBD1 Missense_Mutation p.R384W 0.41 deleterious(0) probably_damaging(0.993) TCGA-LP-A4AV-01 17 59161923 59161923 C G BCAS3 Nonsense_Mutation p.S823* 0.38 TCGA-LP-A4AV-01 17 61904966 61904966 C T FTSJ3 5'UTR 0.33 TCGA-LP-A4AV-01 17 62225699 62225699 G A TEX2 3'UTR 0.42 TCGA-LP-A4AV-01 17 62226294 62226294 G C TEX2 3'UTR 0.21 TCGA-LP-A4AV-01 17 648334 648334 G A GEMIN4 Silent p.F983F 0.50 TCGA-LP-A4AV-01 17 65889808 65889808 C T BPTF Missense_Mutation p.S793L 0.15 possibly_damaging(0.713) TCGA-LP-A4AV-01 17 73566530 73566530 G A LLGL2 Missense_Mutation p.R659Q 0.38 tolerated(0.05) possibly_damaging(0.703) TCGA-LP-A4AV-01 17 73620043 73620043 G A RECQL5 3'Flank 0.21 TCGA-LP-A4AV-01 17 79207075 79207075 G C ENTHD2 Intron 0.40 TCGA-LP-A4AV-01 17 80789552 80789553 - G ZNF750 Frame_Shift_Ins p.L260Pfs*8 0.34 TCGA-LP-A4AV-01 17 8216307 8216307 C G ARHGEF15 Silent p.L223L 0.29 TCGA-LP-A4AV-01 17 8249090 8249090 C A ODF4 Missense_Mutation p.P232T 0.29 tolerated(0.58) benign(0.399) TCGA-LP-A4AV-01 17 9448566 9448566 G C STX8 Silent p.L82L 0.43 TCGA-LP-A4AV-01 18 21061321 21061321 G C RIOK3 3'UTR 0.36 TCGA-LP-A4AV-01 18 28923597 28923597 C A DSG1 Intron 0.34 TCGA-LP-A4AV-01 18 28923956 28923956 C T DSG1 Missense_Mutation p.S630L 0.19 deleterious(0) benign(0.257) TCGA-LP-A4AV-01 18 29036985 29036985 G A DSG3 Missense_Mutation p.M38I 0.50 deleterious(0.03) benign(0.001) TCGA-LP-A4AV-01 18 31322918 31322918 C T ASXL3 Nonsense_Mutation p.R1036* 0.17 TCGA-LP-A4AV-01 18 32470127 32470127 G A DTNA Intron 0.33 TCGA-LP-A4AV-01 18 56401561 56401561 C G MALT1 Missense_Mutation p.P475A 0.28 tolerated(0.23) benign(0.215) TCGA-LP-A4AV-01 18 7011412 7011412 C T LAMA1 Missense_Mutation p.E1192K 0.40 tolerated(0.62) benign(0.021) TCGA-LP-A4AV-01 18 72250867 72250867 C A CNDP1 Silent p.I460I 0.25 TCGA-LP-A4AV-01 18 72345785 72345785 C T ZNF407 Missense_Mutation p.S937L 0.40 tolerated(0.26) benign(0.002) TCGA-LP-A4AV-01 19 10416086 10416086 G C ZGLP1 Silent p.L226L 0.33 TCGA-LP-A4AV-01 19 11472092 11472092 C T DKFZP761J1410 Silent p.L172L 0.16 TCGA-LP-A4AV-01 19 13227100 13227100 C T TRMT1 Silent p.E38E 0.25 TCGA-LP-A4AV-01 19 1497394 1497394 C T REEP6 3'UTR 0.20 TCGA-LP-A4AV-01 19 16338995 16338995 C T AP1M1 Silent p.H300H 0.39 TCGA-LP-A4AV-01 19 18898414 18898414 C T COMP Missense_Mutation p.E341K 0.40 tolerated(1) benign(0) TCGA-LP-A4AV-01 19 19313682 19313682 G C NR2C2AP Nonsense_Mutation p.S16* 0.31 TCGA-LP-A4AV-01 19 36365430 36365430 C G APLP1 Missense_Mutation p.L361V 0.21 deleterious(0) probably_damaging(0.994) TCGA-LP-A4AV-01 19 37579959 37579959 C T ZNF420 5'UTR 0.31 TCGA-LP-A4AV-01 19 39575922 39575922 C T PAPL Missense_Mutation p.P5S 0.60 tolerated_low_confidence(0.47) benign(0.003) TCGA-LP-A4AV-01 19 39915451 39915451 C T PLEKHG2 Silent p.L1226L 0.30 TCGA-LP-A4AV-01 19 40382372 40382372 C G FCGBP Missense_Mutation p.G3505A 0.18 probably_damaging(0.939) TCGA-LP-A4AV-01 19 40741040 40741040 G C AKT2 Missense_Mutation p.F426L 0.36 deleterious(0.01) possibly_damaging(0.54) TCGA-LP-A4AV-01 19 41119606 41119606 G C LTBP4 Intron 0.23 TCGA-LP-A4AV-01 19 41630802 41630802 G A CYP2F1 Silent p.L381L 0.20 TCGA-LP-A4AV-01 19 41825618 41825618 G A CCDC97 Silent p.G214G 0.35 TCGA-LP-A4AV-01 19 42191149 42191149 G A CEACAM7 Missense_Mutation p.S23L 0.24 deleterious(0.04) probably_damaging(1) TCGA-LP-A4AV-01 19 42795860 42795860 C T CIC Missense_Mutation p.S950L 0.29 possibly_damaging(0.879) TCGA-LP-A4AV-01 19 4324496 4324496 C T STAP2 Missense_Mutation p.R414K 0.32 tolerated_low_confidence(0.58) benign(0.003) TCGA-LP-A4AV-01 19 43858504 43858504 C T CD177 Silent p.L113L 0.25 TCGA-LP-A4AV-01 19 4513178 4513178 G C PLIN4 Missense_Mutation p.T251R 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-LP-A4AV-01 19 45262962 45262962 C T BCL3 3'UTR 0.33 TCGA-LP-A4AV-01 19 45997562 45997562 C T RTN2 Missense_Mutation p.D226N 0.34 tolerated_low_confidence(0.05) benign(0.064) TCGA-LP-A4AV-01 19 47503618 47503618 G C ARHGAP35 Missense_Mutation p.M1391I 0.31 deleterious(0) probably_damaging(0.963) TCGA-LP-A4AV-01 19 48887664 48887664 C T KDELR1 Missense_Mutation p.E143K 0.30 tolerated(0.1) benign(0.44) TCGA-LP-A4AV-01 19 49164924 49164924 C G NTN5 3'UTR 0.25 TCGA-LP-A4AV-01 19 49341352 49341352 C T PLEKHA4 Missense_Mutation p.E667K 0.47 deleterious_low_confidence(0.04) benign(0.052) TCGA-LP-A4AV-01 19 50365825 50365825 C T PNKP Silent p.K302K 0.18 TCGA-LP-A4AV-01 19 51132566 51132566 G A SYT3 Silent p.I422I 0.60 TCGA-LP-A4AV-01 19 52375874 52375874 C G ZNF577 Missense_Mutation p.E457Q 0.31 tolerated(0.07) benign(0.016) TCGA-LP-A4AV-01 19 52497885 52497885 C G ZNF615 Missense_Mutation p.R159S 0.50 tolerated(0.2) benign(0.005) TCGA-LP-A4AV-01 19 52803701 52803701 G A ZNF480 Silent p.K12K 0.27 TCGA-LP-A4AV-01 19 53207878 53207878 G T ZNF611 3'UTR 0.34 TCGA-LP-A4AV-01 19 53207914 53207914 G A ZNF611 3'UTR 0.34 TCGA-LP-A4AV-01 19 55264172 55264172 C G KIR2DL3 3'UTR 0.50 TCGA-LP-A4AV-01 19 57328738 57328738 C T PEG3 Missense_Mutation p.E358K 0.50 deleterious(0.04) benign(0.238) TCGA-LP-A4AV-01 19 57764604 57764604 G A ZNF805 Silent p.L139L 0.29 TCGA-LP-A4AV-01 19 6679458 6679458 C T C3 Silent p.L1502L 0.29 TCGA-LP-A4AV-01 19 9070110 9070110 G C MUC16 Missense_Mutation p.S5779C 0.25 unknown(0) TCGA-LP-A4AV-01 19 9070263 9070263 G C MUC16 Missense_Mutation p.S5728C 0.26 unknown(0) TCGA-LP-A4AV-01 19 9070869 9070869 G C MUC16 Missense_Mutation p.S5526C 0.40 unknown(0) TCGA-LP-A4AV-01 19 9071029 9071029 G A MUC16 Nonsense_Mutation p.Q5473* 0.25 TCGA-LP-A4AV-01 19 9071367 9071367 G A MUC16 Missense_Mutation p.S5360F 0.32 unknown(0) TCGA-LP-A4AV-01 19 9071445 9071445 G C MUC16 Missense_Mutation p.S5334C 0.29 unknown(0) TCGA-LP-A4AV-01 19 9071580 9071580 G A MUC16 Missense_Mutation p.S5289L 0.23 unknown(0) TCGA-LP-A4AV-01 19 9071925 9071925 G T MUC16 Missense_Mutation p.S5174Y 0.20 unknown(0) TCGA-LP-A4AV-01 19 9072414 9072414 G A MUC16 Missense_Mutation p.S5011L 0.14 unknown(0) TCGA-LP-A4AV-01 19 9072600 9072600 G T MUC16 Nonsense_Mutation p.S4949* 0.34 TCGA-LP-A4AV-01 19 9072723 9072723 G A MUC16 Missense_Mutation p.S4908L 0.34 unknown(0) TCGA-LP-A4AV-01 19 9073656 9073656 G A MUC16 Missense_Mutation p.S4597F 0.36 unknown(0) TCGA-LP-A4AV-01 19 9073852 9073852 G T MUC16 Missense_Mutation p.H4532N 0.26 unknown(0) TCGA-LP-A4AV-01 1 103540273 103540273 C T COL11A1 Silent p.K184K 0.27 TCGA-LP-A4AV-01 1 11014198 11014198 C T C1orf127 Missense_Mutation p.R326Q 0.27 tolerated(0.92) benign(0.008) TCGA-LP-A4AV-01 1 111506364 111506364 G T LRIF1 5'UTR 0.15 TCGA-LP-A4AV-01 1 111861126 111861126 G A CHIA Missense_Mutation p.M247I 0.14 tolerated(0.1) benign(0.178) TCGA-LP-A4AV-01 1 113242368 113242368 G A MOV10 Missense_Mutation p.R882Q 0.27 deleterious(0) probably_damaging(0.992) TCGA-LP-A4AV-01 1 114308986 114308986 G C RSBN1 Missense_Mutation p.I675M 0.12 deleterious(0.04) probably_damaging(0.961) TCGA-LP-A4AV-01 1 115256495 115256495 C T NRAS Missense_Mutation p.M72I 0.24 tolerated(0.12) benign(0.101) TCGA-LP-A4AV-01 1 115398161 115398161 C G SYCP1 Missense_Mutation p.Q26E 0.28 deleterious(0) benign(0.123) TCGA-LP-A4AV-01 1 12316413 12316413 G C VPS13D Missense_Mutation p.E231D 0.24 probably_damaging(0.916) TCGA-LP-A4AV-01 1 12445405 12445405 G A VPS13D Silent p.K3819K 0.12 TCGA-LP-A4AV-01 1 1354676 1354676 C T ANKRD65 Missense_Mutation p.R335Q 0.23 tolerated(0.25) unknown(0) TCGA-LP-A4AV-01 1 145473276 145473276 C T ANKRD34A 5'UTR 0.32 TCGA-LP-A4AV-01 1 145473666 145473666 C T ANKRD34A Missense_Mutation p.S113L 0.43 deleterious(0) probably_damaging(0.995) TCGA-LP-A4AV-01 1 145473676 145473676 C A ANKRD34A Silent p.V116V 0.46 TCGA-LP-A4AV-01 1 146398312 146398312 C G NBPF12 Missense_Mutation p.H100D 0.09 benign(0.412) TCGA-LP-A4AV-01 1 152188223 152188223 G C HRNR Missense_Mutation p.S1961C 0.03 unknown(0) TCGA-LP-A4AV-01 1 153910246 153910246 C T DENND4B Missense_Mutation p.E687K 0.28 deleterious(0) benign(0.086) TCGA-LP-A4AV-01 1 153955952 153955952 C G RAB13 Intron 0.16 TCGA-LP-A4AV-01 1 155230178 155230178 C G SCAMP3 Missense_Mutation p.E111Q 0.41 tolerated(0.09) benign(0.024) TCGA-LP-A4AV-01 1 155912316 155912316 G A RXFP4 Silent p.V272V 0.23 TCGA-LP-A4AV-01 1 156131245 156131245 G A SEMA4A Missense_Mutation p.A307T 0.11 tolerated(0.11) possibly_damaging(0.832) TCGA-LP-A4AV-01 1 158815707 158815707 G A MNDA Missense_Mutation p.E301K 0.15 tolerated(1) benign(0) TCGA-LP-A4AV-01 1 159869894 159869894 C T CCDC19 5'UTR 0.23 TCGA-LP-A4AV-01 1 160053898 160053898 G A KCNJ9 Silent p.E26E 0.24 TCGA-LP-A4AV-01 1 161141583 161141583 T C B4GALT3 3'UTR 0.67 TCGA-LP-A4AV-01 1 167825573 167825573 G A ADCY10 Silent p.F667F 0.26 TCGA-LP-A4AV-01 1 16955051 16955051 C T CROCCP2 3'Flank 0.10 TCGA-LP-A4AV-01 1 171621374 171621374 C T MYOC Silent p.R126R 0.17 TCGA-LP-A4AV-01 1 17350561 17350561 G C SDHB Silent p.L183L 0.33 TCGA-LP-A4AV-01 1 17966704 17966704 C T ARHGEF10L Missense_Mutation p.R727C 0.22 deleterious(0) probably_damaging(0.982) TCGA-LP-A4AV-01 1 182523782 182523782 C T RGSL1 Nonsense_Mutation p.Q1051* 0.18 TCGA-LP-A4AV-01 1 186017887 186017887 C T HMCN1 Nonsense_Mutation p.Q2165* 0.11 TCGA-LP-A4AV-01 1 19553813 19553813 G C EMC1 Silent p.L732L 0.31 TCGA-LP-A4AV-01 1 196711179 196711179 G C CFH Missense_Mutation p.R1044T 0.14 deleterious(0.02) benign(0.285) TCGA-LP-A4AV-01 1 201181870 201181870 G A IGFN1 Missense_Mutation p.D2617N 0.14 benign(0.063) TCGA-LP-A4AV-01 1 201182516 201182516 G A IGFN1 Missense_Mutation p.R2832K 0.29 benign(0.205) TCGA-LP-A4AV-01 1 203456575 203456575 G A PRELP 3'UTR 0.22 TCGA-LP-A4AV-01 1 204403022 204403022 C T PIK3C2B Missense_Mutation p.D1248N 0.25 deleterious(0) probably_damaging(0.994) TCGA-LP-A4AV-01 1 204939816 204939816 G A NFASC Missense_Mutation p.R359Q 0.13 deleterious(0.04) benign(0.183) TCGA-LP-A4AV-01 1 207039221 207039221 C T IL20 Silent p.F8F 0.49 TCGA-LP-A4AV-01 1 212619333 212619339 CAAGGAT TAAGGACGAAAGGAC NENF Frame_Shift_Ins p.F172Rfs*22 0.22 TCGA-LP-A4AV-01 1 214818772 214818772 C G CENPF Silent p.L1953L 0.28 TCGA-LP-A4AV-01 1 216380627 216380627 G A USH2A Nonsense_Mutation p.Q1102* 0.41 TCGA-LP-A4AV-01 1 216679098 216679098 G A ESRRG 3'UTR 0.33 TCGA-LP-A4AV-01 1 224563512 224563512 G C CNIH4 Missense_Mutation p.L136F 0.10 deleterious(0) probably_damaging(0.946) TCGA-LP-A4AV-01 1 236212096 236212096 C A NID1 Missense_Mutation p.R140I 0.29 deleterious(0.01) possibly_damaging(0.896) TCGA-LP-A4AV-01 1 241099999 241099999 C T RGS7 Silent p.A78A 0.27 TCGA-LP-A4AV-01 1 247492661 247492661 C T ZNF496 Missense_Mutation p.E74K 0.30 deleterious(0.02) probably_damaging(0.914) TCGA-LP-A4AV-01 1 27107772 27107772 G T ARID1A 3'UTR 0.26 TCGA-LP-A4AV-01 1 28661017 28661017 G A MED18 Missense_Mutation p.E55K 0.46 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 1 32540602 32540602 G T TMEM39B Nonsense_Mutation p.E19* 0.49 TCGA-LP-A4AV-01 1 33360407 33360407 C G TMEM54 Nonstop_Mutation p.*223Sext*57 0.25 TCGA-LP-A4AV-01 1 35250432 35250432 C T GJB3 Silent p.I23I 0.26 TCGA-LP-A4AV-01 1 40315816 40315816 G A TRIT1 Silent p.I226I 0.26 TCGA-LP-A4AV-01 1 42047016 42047016 G A HIVEP3 Silent p.L1151L 0.23 TCGA-LP-A4AV-01 1 43125213 43125213 G A PPIH Missense_Mutation p.G59E 0.32 deleterious(0) probably_damaging(0.997) TCGA-LP-A4AV-01 1 44422596 44422596 G A IPO13 Missense_Mutation p.E407K 0.31 tolerated(0.23) benign(0.018) TCGA-LP-A4AV-01 1 45271718 45271718 G A TCTEX1D4 Missense_Mutation p.S208L 0.22 deleterious(0) probably_damaging(0.97) TCGA-LP-A4AV-01 1 46715746 46715746 G C RAD54L Missense_Mutation p.L55F 0.34 deleterious(0.04) probably_damaging(0.98) TCGA-LP-A4AV-01 1 48703375 48703375 C T SLC5A9 Silent p.V464V 0.24 TCGA-LP-A4AV-01 1 52859356 52859356 C G ORC1 Missense_Mutation p.D281H 0.27 tolerated(0.07) benign(0.031) TCGA-LP-A4AV-01 1 62232113 62232113 G A INADL Missense_Mutation p.D118N 0.27 deleterious(0.01) benign(0.214) TCGA-LP-A4AV-01 1 65860665 65860665 C T DNAJC6 Missense_Mutation p.S663F 0.27 deleterious(0) benign(0.311) TCGA-LP-A4AV-01 1 67507937 67507937 G A SLC35D1 Silent p.F237F 0.19 TCGA-LP-A4AV-01 1 67558403 67558403 G C C1orf141 3'UTR 0.26 TCGA-LP-A4AV-01 1 67558461 67558461 G C C1orf141 3'UTR 0.21 TCGA-LP-A4AV-01 1 67559205 67559205 G C C1orf141 Missense_Mutation p.S229C 0.15 tolerated(0.1) probably_damaging(0.938) TCGA-LP-A4AV-01 1 76280787 76280787 G A MSH4 Missense_Mutation p.E261K 0.25 deleterious(0) possibly_damaging(0.714) TCGA-LP-A4AV-01 1 79403949 79403949 C A ELTD1 Nonsense_Mutation p.E138* 0.42 TCGA-LP-A4AV-01 1 7980864 7980864 G A TNFRSF9 3'UTR 0.11 TCGA-LP-A4AV-01 1 85630294 85630294 G C SYDE2 Silent p.V1000V 0.21 TCGA-LP-A4AV-01 1 91844728 91844728 C T HFM1 Nonsense_Mutation p.W350* 0.13 TCGA-LP-A4AV-01 1 9992944 9992944 G A LZIC Silent p.L117L 0.13 TCGA-LP-A4AV-01 20 13763309 13763309 C G ESF1 Missense_Mutation p.E160Q 0.36 deleterious_low_confidence(0.03) benign(0.261) TCGA-LP-A4AV-01 20 1435674 1435674 C G NSFL1C Missense_Mutation p.E130Q 0.22 deleterious(0.01) probably_damaging(0.947) TCGA-LP-A4AV-01 20 29632686 29632686 G C FRG1B Missense_Mutation p.Q167H 0.08 deleterious(0.01) possibly_damaging(0.811) TCGA-LP-A4AV-01 20 31573703 31573703 C T SUN5 Missense_Mutation p.V246M 0.08 tolerated(0.17) benign(0.261) TCGA-LP-A4AV-01 20 31644432 31644432 C T BPIFB3 Missense_Mutation p.S70L 0.09 tolerated(0.3) possibly_damaging(0.673) TCGA-LP-A4AV-01 20 33173287 33173287 G C PIGU Missense_Mutation p.Q294E 0.71 deleterious(0) probably_damaging(0.981) TCGA-LP-A4AV-01 20 33764059 33764059 G C PROCR Silent p.G137G 0.74 TCGA-LP-A4AV-01 20 33875489 33875489 G C FAM83C Missense_Mutation p.L365V 0.16 tolerated_low_confidence(0.06) possibly_damaging(0.505) TCGA-LP-A4AV-01 20 3723036 3723036 G A HSPA12B Missense_Mutation p.E83K 0.46 tolerated(0.12) benign(0.26) TCGA-LP-A4AV-01 20 47258778 47258778 G C PREX1 Missense_Mutation p.L1235V 0.62 tolerated(0.06) possibly_damaging(0.45) TCGA-LP-A4AV-01 20 47712917 47712917 C T CSE1L Missense_Mutation p.A953V 0.08 tolerated(0.26) benign(0.082) TCGA-LP-A4AV-01 20 60585161 60585161 G A TAF4 Nonsense_Mutation p.Q568* 0.15 TCGA-LP-A4AV-01 20 60962962 60962962 C T RPS21 Missense_Mutation p.R60C 0.11 tolerated(0.05) benign(0.033) TCGA-LP-A4AV-01 20 62375321 62375321 C T ZBTB46 3'UTR 0.63 TCGA-LP-A4AV-01 20 62904609 62904609 C T PCMTD2 Missense_Mutation p.R248C 0.76 deleterious(0) probably_damaging(0.998) TCGA-LP-A4AV-01 21 30714831 30714831 C G BACH1 Missense_Mutation p.L630V 0.21 deleterious(0) probably_damaging(0.994) TCGA-LP-A4AV-01 21 32598150 32598150 G C TIAM1 Missense_Mutation p.I567M 0.38 deleterious(0.01) probably_damaging(0.945) TCGA-LP-A4AV-01 21 32598201 32598201 G A TIAM1 Silent p.V550V 0.52 TCGA-LP-A4AV-01 21 34399339 34399339 G A OLIG2 Missense_Mutation p.G57S 0.34 tolerated(0.27) benign(0.013) TCGA-LP-A4AV-01 21 42780267 42780267 C T MX2 3'UTR 0.33 TCGA-LP-A4AV-01 21 43171267 43171267 C T RIPK4 Missense_Mutation p.D205N 0.29 deleterious(0) probably_damaging(0.996) TCGA-LP-A4AV-01 21 45374858 45374858 G C AGPAT3 Intron 0.46 TCGA-LP-A4AV-01 21 45479586 45479586 G C TRAPPC10 Intron 0.33 TCGA-LP-A4AV-01 22 19119464 19119464 C T TSSK2 Silent p.P184P 0.26 TCGA-LP-A4AV-01 22 24159068 24159068 C G SMARCB1 Missense_Mutation p.S247C 0.32 tolerated(0.11) benign(0.021) TCGA-LP-A4AV-01 22 29908040 29908040 C T THOC5 Silent p.E589E 0.19 TCGA-LP-A4AV-01 22 31011416 31011416 G A TCN2 Missense_Mutation p.E237K 0.28 tolerated(0.09) benign(0.037) TCGA-LP-A4AV-01 22 31668686 31668686 G A LIMK2 Silent p.L497L 0.21 TCGA-LP-A4AV-01 22 32330005 32330005 C G C22orf24 3'UTR 0.14 TCGA-LP-A4AV-01 22 38021921 38021921 C T GGA1 Missense_Mutation p.S353L 0.23 deleterious(0.04) benign(0.126) TCGA-LP-A4AV-01 22 38130627 38130627 G A TRIOBP Silent p.Q1428Q 0.23 TCGA-LP-A4AV-01 22 38130869 38130869 G C TRIOBP Missense_Mutation p.R1509T 0.23 tolerated_low_confidence(0.62) benign(0.01) TCGA-LP-A4AV-01 22 38131387 38131387 G A TRIOBP Missense_Mutation p.E1682K 0.31 tolerated_low_confidence(0.07) probably_damaging(0.98) TCGA-LP-A4AV-01 22 38150912 38150912 C G TRIOBP Missense_Mutation p.S1803C 0.47 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-LP-A4AV-01 22 41075624 41075624 C T MCHR1 Missense_Mutation p.R59W 0.30 deleterious_low_confidence(0.01) benign(0) TCGA-LP-A4AV-01 22 42294721 42294721 G A SREBF2 Missense_Mutation p.D892N 0.24 deleterious(0) possibly_damaging(0.696) TCGA-LP-A4AV-01 22 42606778 42606778 C T TCF20 Missense_Mutation p.E1512K 0.40 possibly_damaging(0.463) TCGA-LP-A4AV-01 22 50283630 50283630 G A ZBED4 3'UTR 0.25 TCGA-LP-A4AV-01 22 50598170 50598170 G A MOV10L1 Missense_Mutation p.E1094K 0.34 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 22 51237617 51237617 C G RPL23AP82 RNA 0.33 TCGA-LP-A4AV-01 2 106510117 106510117 G A NCK2 3'UTR 0.17 TCGA-LP-A4AV-01 2 128366440 128366440 C T MYO7B Missense_Mutation p.S934L 0.34 deleterious(0.01) benign(0.022) TCGA-LP-A4AV-01 2 135926468 135926468 C G RAB3GAP1 3'UTR 0.28 TCGA-LP-A4AV-01 2 141093401 141093401 C G LRP1B Missense_Mutation p.E3967Q 0.18 benign(0.403) TCGA-LP-A4AV-01 2 157442396 157442396 G C GPD2 3'UTR 0.36 TCGA-LP-A4AV-01 2 161056601 161056601 G T ITGB6 5'UTR 0.35 TCGA-LP-A4AV-01 2 167289033 167289033 G C SCN7A Missense_Mutation p.S796C 0.42 deleterious(0.05) probably_damaging(0.954) TCGA-LP-A4AV-01 2 168114788 168114788 G A XIRP2 3'UTR 0.44 TCGA-LP-A4AV-01 2 171702126 171702126 G A GAD1 Missense_Mutation p.E288K 0.34 tolerated(0.15) possibly_damaging(0.689) TCGA-LP-A4AV-01 2 175425364 175425364 C G WIPF1 3'UTR 0.38 TCGA-LP-A4AV-01 2 179393069 179393069 C T TTN Missense_Mutation p.G35770E 0.35 TCGA-LP-A4AV-01 2 179407639 179407639 C T TTN Silent p.K32314K 0.33 TCGA-LP-A4AV-01 2 182339728 182339728 G C ITGA4 Missense_Mutation p.E121Q 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-LP-A4AV-01 2 203622079 203622079 A G FAM117B Silent p.T416T 0.33 TCGA-LP-A4AV-01 2 211421548 211421548 T A CPS1 Missense_Mutation p.F37I 0.35 tolerated_low_confidence(0.07) benign(0.001) TCGA-LP-A4AV-01 2 220473122 220473122 G A STK11IP Missense_Mutation p.E536K 0.50 tolerated(0.29) benign(0.037) TCGA-LP-A4AV-01 2 223787797 223787797 C G ACSL3 Missense_Mutation p.S361C 0.40 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 2 228882203 228882203 C A SPHKAP Nonsense_Mutation p.E1123* 0.55 TCGA-LP-A4AV-01 2 228882252 228882252 C T SPHKAP Silent p.L1106L 0.69 TCGA-LP-A4AV-01 2 24299152 24299152 C T SF3B14 5'UTR 0.52 TCGA-LP-A4AV-01 2 25965752 25965752 G C ASXL2 Missense_Mutation p.L1152V 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-LP-A4AV-01 2 25966681 25966681 G A ASXL2 Missense_Mutation p.S842L 0.27 tolerated_low_confidence(0.06) benign(0.009) TCGA-LP-A4AV-01 2 25966688 25966688 G A ASXL2 Silent p.L840L 0.19 TCGA-LP-A4AV-01 2 27459176 27459176 G C CAD Missense_Mutation p.E1367Q 0.35 tolerated(0.2) probably_damaging(0.925) TCGA-LP-A4AV-01 2 27656621 27656621 G C NRBP1 Missense_Mutation p.E98Q 0.61 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AV-01 2 27873118 27873118 C T GPN1 3'UTR 0.31 TCGA-LP-A4AV-01 2 28531378 28531378 G A BRE Intron 0.24 TCGA-LP-A4AV-01 2 29001749 29001749 C G PPP1CB Missense_Mutation p.L87V 0.35 tolerated_low_confidence(0.06) benign(0.014) TCGA-LP-A4AV-01 2 39042697 39042697 C A DHX57 Missense_Mutation p.G1191V 0.27 tolerated(0.08) possibly_damaging(0.853) TCGA-LP-A4AV-01 2 46583934 46583934 G C EPAS1 Silent p.L147L 0.48 TCGA-LP-A4AV-01 2 46739562 46739562 C T ATP6V1E2 Missense_Mutation p.E97K 0.33 deleterious(0) possibly_damaging(0.497) TCGA-LP-A4AV-01 2 48844955 48844955 C T GTF2A1L 5'Flank 0.36 TCGA-LP-A4AV-01 2 61149532 61149532 G A REL Missense_Mutation p.M574I 0.37 tolerated_low_confidence(0.12) benign(0.033) TCGA-LP-A4AV-01 2 69723155 69723155 G C AAK1 Missense_Mutation p.S776C 0.29 deleterious(0) possibly_damaging(0.846) TCGA-LP-A4AV-01 2 74689731 74689731 G A MOGS Silent p.L395L 0.50 TCGA-LP-A4AV-01 2 74708006 74708006 G C CCDC142 Missense_Mutation p.L458V 0.43 deleterious(0.04) probably_damaging(0.994) TCGA-LP-A4AV-01 2 74808954 74808954 C T M1AP Missense_Mutation p.D206N 0.25 deleterious(0) possibly_damaging(0.798) TCGA-LP-A4AV-01 2 74902895 74902895 C A SEMA4F Missense_Mutation p.S501Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AV-01 2 75720723 75720723 C T EVA1A Missense_Mutation p.R33Q 0.31 deleterious(0.04) probably_damaging(0.958) TCGA-LP-A4AV-01 2 85766380 85766380 C T MAT2A 5'UTR 0.19 TCGA-LP-A4AV-01 2 85766425 85766425 C T MAT2A Silent p.L5L 0.25 TCGA-LP-A4AV-01 2 8998110 8998110 G T MBOAT2 3'UTR 0.31 TCGA-LP-A4AV-01 2 96071357 96071357 G A FAHD2A Silent p.Q17Q 0.37 TCGA-LP-A4AV-01 3 101395951 101395951 C T ZBTB11 5'UTR 0.37 TCGA-LP-A4AV-01 3 121416703 121416703 C G GOLGB1 Missense_Mutation p.E889D 0.15 benign(0.249) TCGA-LP-A4AV-01 3 122143372 122143372 C G KPNA1 3'UTR 0.26 TCGA-LP-A4AV-01 3 122545733 122545733 C G DIRC2 Missense_Mutation p.S175C 0.12 deleterious(0.01) possibly_damaging(0.753) TCGA-LP-A4AV-01 3 124045013 124045013 G A KALRN Missense_Mutation p.E425K 0.19 deleterious(0.03) benign(0.139) TCGA-LP-A4AV-01 3 125635572 125635572 G C FAM86JP RNA 0.21 TCGA-LP-A4AV-01 3 126071245 126071245 G A KLF15 Missense_Mutation p.S174L 0.30 tolerated(0.14) benign(0.002) TCGA-LP-A4AV-01 3 128292326 128292326 C G C3orf27 Missense_Mutation p.E83Q 0.29 possibly_damaging(0.607) TCGA-LP-A4AV-01 3 128292645 128292645 C G C3orf27 5'UTR 0.18 TCGA-LP-A4AV-01 3 130300620 130300620 G C COL6A6 Missense_Mutation p.E1255Q 0.16 tolerated(1) probably_damaging(0.997) TCGA-LP-A4AV-01 3 132395370 132395370 G C UBA5 Nonstop_Mutation p.*405Yext*12 0.42 TCGA-LP-A4AV-01 3 133478068 133478068 G A TF Silent p.L366L 0.31 TCGA-LP-A4AV-01 3 137983011 137983011 G A ARMC8 Missense_Mutation p.R405Q 0.13 deleterious(0.03) possibly_damaging(0.768) TCGA-LP-A4AV-01 3 137991869 137991869 G A ARMC8 Missense_Mutation p.E500K 0.22 tolerated(0.2) possibly_damaging(0.775) TCGA-LP-A4AV-01 3 140167531 140167531 C G CLSTN2 Missense_Mutation p.L320V 0.21 tolerated(0.08) benign(0.168) TCGA-LP-A4AV-01 3 141161907 141161907 C G ZBTB38 Missense_Mutation p.S226C 0.33 deleterious(0) possibly_damaging(0.708) TCGA-LP-A4AV-01 3 170023158 170023158 G C PRKCI 3'UTR 0.15 TCGA-LP-A4AV-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-LP-A4AV-01 3 184052992 184052992 C G EIF4G1 3'UTR 0.10 TCGA-LP-A4AV-01 3 193854273 193854273 G A HES1 Missense_Mutation p.R35K 0.16 tolerated(0.06) possibly_damaging(0.708) TCGA-LP-A4AV-01 3 195507218 195507218 G C MUC4 Missense_Mutation p.L3745V 0.13 benign(0.374) TCGA-LP-A4AV-01 3 195511900 195511900 G C MUC4 Nonsense_Mutation p.S2184* 0.11 TCGA-LP-A4AV-01 3 195512583 195512583 G A MUC4 Silent p.T1956T 0.13 TCGA-LP-A4AV-01 3 195698251 195698251 C G SDHAP1 RNA 0.15 TCGA-LP-A4AV-01 3 20225407 20225407 G C SGOL1 Missense_Mutation p.S38C 0.43 deleterious(0) probably_damaging(0.998) TCGA-LP-A4AV-01 3 3139969 3139969 G A IL5RA Missense_Mutation p.P125S 0.36 tolerated(0.09) benign(0.126) TCGA-LP-A4AV-01 3 33855109 33855109 C G PDCD6IP Missense_Mutation p.S108C 0.29 deleterious(0.02) benign(0.425) TCGA-LP-A4AV-01 3 40573774 40573774 G C ZNF621 Missense_Mutation p.M171I 0.33 tolerated(0.21) benign(0.008) TCGA-LP-A4AV-01 3 4355755 4355755 C T SETMAR Intron 0.64 TCGA-LP-A4AV-01 3 4508728 4508728 G A SUMF1 Missense_Mutation p.H68Y 0.37 tolerated(0.5) benign(0.067) TCGA-LP-A4AV-01 3 47164680 47164680 G A SETD2 Silent p.D482D 0.36 TCGA-LP-A4AV-01 3 4821245 4821245 G A ITPR1 Silent p.S2086S 0.27 TCGA-LP-A4AV-01 3 48415040 48415040 C T FBXW12 Missense_Mutation p.S44L 0.32 tolerated(0.09) benign(0.067) TCGA-LP-A4AV-01 3 48502116 48502116 C G ATRIP Missense_Mutation p.H555D 0.30 tolerated(0.12) benign(0.147) TCGA-LP-A4AV-01 3 49138860 49138860 G A QARS Silent p.F268F 0.29 TCGA-LP-A4AV-01 3 49152994 49152994 C G USP19 Missense_Mutation p.E589Q 0.26 tolerated(0.08) probably_damaging(0.925) TCGA-LP-A4AV-01 3 49153054 49153054 C T USP19 Missense_Mutation p.V569M 0.25 deleterious(0) probably_damaging(0.998) TCGA-LP-A4AV-01 3 49924830 49924830 C A MST1R Missense_Mutation p.M1371I 0.34 deleterious_low_confidence(0.03) benign(0.011) TCGA-LP-A4AV-01 3 49924919 49924919 C G MST1R Missense_Mutation p.E1342Q 0.26 tolerated(0.17) possibly_damaging(0.577) TCGA-LP-A4AV-01 3 49924925 49924925 C A MST1R Nonsense_Mutation p.E1340* 0.25 TCGA-LP-A4AV-01 3 52263189 52263189 G A TWF2 Missense_Mutation p.T304M 0.29 deleterious(0) probably_damaging(0.991) TCGA-LP-A4AV-01 3 52553336 52553336 G C STAB1 Silent p.V1697V 0.23 TCGA-LP-A4AV-01 3 52553417 52553417 G A STAB1 Silent p.P1724P 0.32 TCGA-LP-A4AV-01 3 52939266 52939266 G A SFMBT1 Silent p.L829L 0.19 TCGA-LP-A4AV-01 3 69171455 69171455 G A LMOD3 Missense_Mutation p.S28F 0.78 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 3 97592124 97592124 C T CRYBG3 Nonsense_Mutation p.Q696* 0.42 TCGA-LP-A4AV-01 4 111539476 111539476 C T PITX2 Silent p.L260L 0.41 TCGA-LP-A4AV-01 4 123222477 123222477 C G KIAA1109 Silent p.L3137L 0.32 TCGA-LP-A4AV-01 4 128865102 128865102 A G MFSD8 Missense_Mutation p.S82P 0.43 deleterious(0.01) possibly_damaging(0.908) TCGA-LP-A4AV-01 4 129857841 129857841 C T SCLT1 Missense_Mutation p.E600K 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-LP-A4AV-01 4 141578289 141578289 C T TBC1D9 Missense_Mutation p.E767K 0.33 tolerated(0.35) benign(0.16) TCGA-LP-A4AV-01 4 144459762 144459762 C T SMARCA5 Silent p.F505F 0.25 TCGA-LP-A4AV-01 4 152682084 152682084 G A PET112 Silent p.F17F 0.20 TCGA-LP-A4AV-01 4 156135547 156135547 C T NPY2R Silent p.I152I 0.36 TCGA-LP-A4AV-01 4 156850736 156850736 C T CTSO Missense_Mutation p.E266K 0.15 tolerated(0.22) benign(0.013) TCGA-LP-A4AV-01 4 17805988 17805988 C T DCAF16 5'UTR 0.38 TCGA-LP-A4AV-01 4 25677984 25677984 C T SLC34A2 Silent p.V562V 0.30 TCGA-LP-A4AV-01 4 38134784 38134784 C T TBC1D1 Missense_Mutation p.S1071F 0.42 deleterious(0.01) probably_damaging(0.945) TCGA-LP-A4AV-01 4 40103779 40103779 C G N4BP2 Missense_Mutation p.S105C 0.50 tolerated(0.11) benign(0.014) TCGA-LP-A4AV-01 4 40103848 40103848 C T N4BP2 Missense_Mutation p.S128L 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-LP-A4AV-01 4 53492271 53492271 C G USP46 Missense_Mutation p.E159Q 0.23 tolerated(0.53) benign(0.009) TCGA-LP-A4AV-01 4 73940567 73940567 G C ANKRD17 3'UTR 0.27 TCGA-LP-A4AV-01 4 8295878 8295878 C T HTRA3 Missense_Mutation p.S334L 0.41 deleterious(0.03) possibly_damaging(0.863) TCGA-LP-A4AV-01 4 89950737 89950737 C T FAM13A Missense_Mutation p.E31K 0.15 tolerated(0.7) benign(0.002) TCGA-LP-A4AV-01 4 960259 960259 G A DGKQ Missense_Mutation p.R475W 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-LP-A4AV-01 4 960260 960260 G A DGKQ Silent p.I474I 0.24 TCGA-LP-A4AV-01 5 112874788 112874788 G C YTHDC2 Missense_Mutation p.E374Q 0.27 deleterious(0.05) benign(0.127) TCGA-LP-A4AV-01 5 123984460 123984460 C T ZNF608 Silent p.E539E 0.21 TCGA-LP-A4AV-01 5 134166585 134166585 G C DDX46 3'Flank 0.29 TCGA-LP-A4AV-01 5 139494400 139494400 G C PURA Missense_Mutation p.E212Q 0.32 deleterious(0.02) possibly_damaging(0.853) TCGA-LP-A4AV-01 5 139745485 139745485 C T SLC4A9 Missense_Mutation p.R617C 0.42 tolerated(0.06) possibly_damaging(0.893) TCGA-LP-A4AV-01 5 140784646 140784646 C T PCDHGA9 Silent p.I709I 0.38 TCGA-LP-A4AV-01 5 142780248 142780248 G C NR3C1 Missense_Mutation p.Q53E 0.28 tolerated_low_confidence(0.17) benign(0.012) TCGA-LP-A4AV-01 5 145643181 145643181 G A RBM27 Missense_Mutation p.G773E 0.47 tolerated(0.82) benign(0.003) TCGA-LP-A4AV-01 5 1479738 1479738 C G LPCAT1 Missense_Mutation p.E272Q 0.24 deleterious(0.02) possibly_damaging(0.603) TCGA-LP-A4AV-01 5 149215920 149215920 C T PPARGC1B Silent p.L634L 0.28 TCGA-LP-A4AV-01 5 149576737 149576737 G A SLC6A7 Nonsense_Mutation p.W161* 0.20 TCGA-LP-A4AV-01 5 149754645 149754645 G T TCOF1 Silent p.G469G 0.36 TCGA-LP-A4AV-01 5 149754679 149754679 G A TCOF1 Missense_Mutation p.E481K 0.44 deleterious(0.01) possibly_damaging(0.812) TCGA-LP-A4AV-01 5 159344660 159344660 G A ADRA1B Missense_Mutation p.E250K 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-LP-A4AV-01 5 175528087 175528087 G C FAM153B Missense_Mutation p.Q123H 0.12 deleterious_low_confidence(0) benign(0.387) TCGA-LP-A4AV-01 5 178460262 178460262 C G ZNF879 Missense_Mutation p.S438C 0.39 deleterious(0.01) probably_damaging(0.925) TCGA-LP-A4AV-01 5 37121812 37121812 G A C5orf42 Missense_Mutation p.S2977L 0.21 deleterious(0) probably_damaging(0.92) TCGA-LP-A4AV-01 5 41012810 41012810 C T MROH2B Missense_Mutation p.E1004K 0.44 deleterious(0.01) possibly_damaging(0.462) TCGA-LP-A4AV-01 5 58270382 58270382 C T PDE4D 3'UTR 0.36 TCGA-LP-A4AV-01 5 75427560 75427560 C A SV2C 5'UTR 0.57 TCGA-LP-A4AV-01 5 90055300 90055300 G A GPR98 Silent p.L4005L 0.19 TCGA-LP-A4AV-01 5 914577 914577 C T TRIP13 Intron 0.34 TCGA-LP-A4AV-01 5 94764306 94764306 G C FAM81B Splice_Site p.X219_splice 0.33 TCGA-LP-A4AV-01 6 108508587 108508587 G A NR2E1 Missense_Mutation p.E360K 0.22 tolerated(0.2) benign(0.069) TCGA-LP-A4AV-01 6 116938064 116938064 C G RSPH4A Missense_Mutation p.S93C 0.23 tolerated_low_confidence(0.19) benign(0.243) TCGA-LP-A4AV-01 6 119297141 119297141 G A FAM184A Nonsense_Mutation p.Q842* 0.42 TCGA-LP-A4AV-01 6 125146608 125146608 G C NKAIN2 3'UTR 0.28 TCGA-LP-A4AV-01 6 139561683 139561683 C T TXLNB 3'UTR 0.47 TCGA-LP-A4AV-01 6 27834579 27834579 C T HIST1H1B 3'UTR 0.40 TCGA-LP-A4AV-01 6 27834744 27834744 C G HIST1H1B Missense_Mutation p.K188N 0.36 deleterious(0) unknown(0) TCGA-LP-A4AV-01 6 29691562 29691562 G A HLA-F Silent p.P64P 0.35 TCGA-LP-A4AV-01 6 30030070 30030070 G T ZNRD1 Missense_Mutation p.D106Y 0.24 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 6 30880141 30880141 C T GTF2H4 Missense_Mutation p.S332F 0.40 deleterious(0.02) probably_damaging(0.961) TCGA-LP-A4AV-01 6 31902038 31902038 C G C2 Missense_Mutation p.L271V 0.36 tolerated(0.24) benign(0.021) TCGA-LP-A4AV-01 6 32023869 32023869 C T TNXB Silent p.L2742L 0.28 TCGA-LP-A4AV-01 6 3287169 3287169 G A SLC22A23 Silent p.L490L 0.28 TCGA-LP-A4AV-01 6 34801995 34801995 G A UHRF1BP1 Missense_Mutation p.E114K 0.54 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AV-01 6 37180457 37180457 C T TMEM217 3'UTR 0.40 TCGA-LP-A4AV-01 6 4073577 4073577 C T FAM217A Splice_Site p.X79_splice 0.25 TCGA-LP-A4AV-01 6 41250403 41250403 C G TREM1 Missense_Mutation p.E46Q 0.45 tolerated(0.61) benign(0) TCGA-LP-A4AV-01 6 42796330 42796330 G C GLTSCR1L Missense_Mutation p.D87H 0.42 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 6 52362234 52362234 G A TRAM2 3'UTR 0.25 TCGA-LP-A4AV-01 6 56047395 56047395 G C COL21A1 Missense_Mutation p.L8V 0.19 tolerated(0.28) benign(0.003) TCGA-LP-A4AV-01 6 56374567 56374567 C G DST Missense_Mutation p.Q3672H 0.44 probably_damaging(0.999) TCGA-LP-A4AV-01 6 72678707 72678707 G A RIMS1 Silent p.A62A 0.27 TCGA-LP-A4AV-01 6 72892124 72892124 G A RIMS1 Missense_Mutation p.R317Q 0.38 tolerated(0.17) probably_damaging(0.99) TCGA-LP-A4AV-01 6 7578090 7578090 C T DSP Nonsense_Mutation p.Q986* 0.35 TCGA-LP-A4AV-01 6 76072464 76072464 G T FILIP1 Nonsense_Mutation p.S149* 0.25 TCGA-LP-A4AV-01 7 100151041 100151041 C T AGFG2 Missense_Mutation p.S168F 0.39 deleterious(0) possibly_damaging(0.786) TCGA-LP-A4AV-01 7 100172787 100172787 G A LRCH4 Silent p.F665F 0.29 TCGA-LP-A4AV-01 7 100404047 100404047 G C EPHB4 Missense_Mutation p.Q827E 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-LP-A4AV-01 7 107303837 107303837 C T SLC26A4 Silent p.D87D 0.36 TCGA-LP-A4AV-01 7 127447549 127447549 G C SND1 Missense_Mutation p.K388N 0.33 deleterious(0.02) benign(0.057) TCGA-LP-A4AV-01 7 128498202 128498202 C T FLNC Missense_Mutation p.R2641W 0.37 tolerated(0.08) probably_damaging(0.932) TCGA-LP-A4AV-01 7 135262642 135262642 C T NUP205 Silent p.L249L 0.43 TCGA-LP-A4AV-01 7 135286123 135286123 G A NUP205 Missense_Mutation p.E794K 0.28 tolerated(0.83) benign(0.216) TCGA-LP-A4AV-01 7 142563943 142563943 G A EPHB6 Missense_Mutation p.R444Q 0.35 deleterious(0.04) probably_damaging(0.984) TCGA-LP-A4AV-01 7 142760157 142760157 G A OR6W1P RNA 0.27 TCGA-LP-A4AV-01 7 146805344 146805344 C T CNTNAP2 Missense_Mutation p.S219F 0.27 tolerated(0.47) possibly_damaging(0.666) TCGA-LP-A4AV-01 7 150746280 150746280 C T ASIC3 Missense_Mutation p.T103M 0.51 deleterious(0) probably_damaging(0.998) TCGA-LP-A4AV-01 7 19812188 19812188 G A TMEM196 Silent p.L44L 0.33 TCGA-LP-A4AV-01 7 23164752 23164752 G C KLHL7 Missense_Mutation p.D135H 0.25 deleterious(0.02) possibly_damaging(0.694) TCGA-LP-A4AV-01 7 2472514 2472514 G C CHST12 Missense_Mutation p.Q80H 0.44 tolerated(0.17) benign(0.002) TCGA-LP-A4AV-01 7 2473301 2473301 G A CHST12 Missense_Mutation p.E343K 0.33 deleterious(0) probably_damaging(1) TCGA-LP-A4AV-01 7 44151818 44151818 C G AEBP1 Silent p.L705L 0.57 TCGA-LP-A4AV-01 7 73152310 73152310 C T ABHD11 Intron 0.40 TCGA-LP-A4AV-01 7 76144472 76144472 C T UPK3B Silent p.A289A 0.35 TCGA-LP-A4AV-01 7 77325884 77325884 C T RSBN1L Missense_Mutation p.S33F 0.25 tolerated_low_confidence(0.06) possibly_damaging(0.683) TCGA-LP-A4AV-01 7 87150144 87150144 G C ABCB1 Missense_Mutation p.Q912E 0.33 deleterious(0.01) benign(0.102) TCGA-LP-A4AV-01 7 89906410 89906410 G A C7orf63 Silent p.L336L 0.29 TCGA-LP-A4AV-01 7 94539853 94539853 G A PPP1R9A Missense_Mutation p.R143Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AV-01 8 10689235 10689235 G A SOX7 Nonsense_Mutation p.Q81* 0.24 TCGA-LP-A4AV-01 8 116424314 116424314 G A TRPS1 3'UTR 0.39 TCGA-LP-A4AV-01 8 135669870 135669870 C T ZFAT Missense_Mutation p.E44K 0.48 deleterious(0.01) benign(0.395) TCGA-LP-A4AV-01 8 144943362 144943362 G A EPPK1 Missense_Mutation p.P1354S 0.33 possibly_damaging(0.883) TCGA-LP-A4AV-01 8 145689761 145689761 C T CYHR1 Intron 0.36 TCGA-LP-A4AV-01 8 27279825 27279825 G A PTK2B Missense_Mutation p.R159Q 0.30 deleterious(0.02) probably_damaging(0.976) TCGA-LP-A4AV-01 8 27288794 27288794 G A PTK2B Intron 0.32 TCGA-LP-A4AV-01 8 27886806 27886806 G T NUGGC Missense_Mutation p.Q711K 0.42 tolerated(0.85) benign(0.003) TCGA-LP-A4AV-01 8 30437888 30437888 G A GTF2E2 Silent p.V223V 0.42 TCGA-LP-A4AV-01 8 35542222 35542222 G A UNC5D Missense_Mutation p.E292K 0.29 deleterious(0.04) benign(0.3) TCGA-LP-A4AV-01 8 38270946 38270946 C G FGFR1 3'UTR 0.33 TCGA-LP-A4AV-01 8 61736429 61736429 C T CHD7 Missense_Mutation p.H1078Y 0.26 probably_damaging(0.994) TCGA-LP-A4AV-01 8 74333628 74333628 C A STAU2 Missense_Mutation p.K564N 0.20 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-LP-A4AV-01 8 75898286 75898286 C T CRISPLD1 Missense_Mutation p.P22S 0.24 tolerated(0.45) benign(0) TCGA-LP-A4AV-01 8 86573389 86573389 G A REXO1L1P 3'UTR 0.07 TCGA-LP-A4AV-01 8 97346653 97346653 C T PTDSS1 3'UTR 0.37 TCGA-LP-A4AV-01 8 99718742 99718742 C G STK3 Missense_Mutation p.E241Q 0.38 deleterious(0.04) probably_damaging(0.967) TCGA-LP-A4AV-01 9 112899137 112899137 G C PALM2-AKAP2 Missense_Mutation p.R438T 0.21 tolerated(0.31) probably_damaging(0.971) TCGA-LP-A4AV-01 9 115233084 115233084 C A HSDL2 3'UTR 0.44 TCGA-LP-A4AV-01 9 117186 117186 G A FOXD4 Missense_Mutation p.R312C 0.25 deleterious(0.04) benign(0.446) TCGA-LP-A4AV-01 9 123914931 123914931 G C CNTRL Missense_Mutation p.E1378Q 0.44 benign(0.015) TCGA-LP-A4AV-01 9 124534964 124534964 C T DAB2IP Silent p.V691V 0.30 TCGA-LP-A4AV-01 9 130652958 130652958 C T ST6GALNAC6 Missense_Mutation p.R221Q 0.35 benign(0.004) TCGA-LP-A4AV-01 9 130928414 130928414 G T CIZ1 3'UTR 0.19 TCGA-LP-A4AV-01 9 132375735 132375735 G A C9orf50 Missense_Mutation p.S341L 0.39 tolerated(0.67) benign(0.002) TCGA-LP-A4AV-01 9 135985048 135985048 G A RALGDS Silent p.S183S 0.39 TCGA-LP-A4AV-01 9 136501831 136501831 C T DBH Missense_Mutation p.A113V 0.13 tolerated(0.1) benign(0.166) TCGA-LP-A4AV-01 9 140093684 140093684 G T TPRN Missense_Mutation p.Q494K 0.26 tolerated(0.15) benign(0.416) TCGA-LP-A4AV-01 9 71861671 71861671 C T TJP2 Nonsense_Mutation p.Q909* 0.21 TCGA-LP-A4AV-01 9 73150133 73150133 C T TRPM3 3'UTR 0.39 TCGA-LP-A4AV-01 9 73150150 73150150 C G TRPM3 3'UTR 0.44 TCGA-LP-A4AV-01 9 77435249 77435249 G A TRPM6 Silent p.L369L 0.24 TCGA-LP-A4AV-01 9 79933357 79933357 G A VPS13A Missense_Mutation p.M1721I 0.22 tolerated(0.2) benign(0.001) TCGA-LP-A4AV-01 9 95795112 95795112 G A FGD3 Missense_Mutation p.R581K 0.50 tolerated(1) benign(0.032) TCGA-LP-A4AV-01 9 96289484 96289484 C G FAM120A Nonsense_Mutation p.S489* 0.27 TCGA-LP-A4AV-01 X 113961366 113961366 G A HTR2C Silent p.A7A 0.32 TCGA-LP-A4AV-01 X 114141909 114141909 G A HTR2C Missense_Mutation p.M436I 0.18 tolerated_low_confidence(0.09) benign(0.05) TCGA-LP-A4AV-01 X 114347796 114347796 G A LRCH2 Nonsense_Mutation p.Q761* 0.20 TCGA-LP-A4AV-01 X 118985826 118985826 C T UPF3B Missense_Mutation p.R56Q 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-LP-A4AV-01 X 129147587 129147587 C T BCORL1 Missense_Mutation p.S280L 0.20 unknown(0) TCGA-LP-A4AV-01 X 129159284 129159284 G C BCORL1 Missense_Mutation p.K1336N 0.29 probably_damaging(0.999) TCGA-LP-A4AV-01 X 134023170 134023170 G A MOSPD1 3'UTR 0.17 TCGA-LP-A4AV-01 X 147027065 147027065 C T FMR1 Missense_Mutation p.H556Y 0.21 tolerated_low_confidence(0.28) benign(0.154) TCGA-LP-A4AV-01 X 153032607 153032607 C T PLXNB3 Nonsense_Mutation p.Q132* 0.26 TCGA-LP-A4AV-01 X 153178166 153178166 C G ARHGAP4 Missense_Mutation p.E550D 0.54 tolerated(0.14) possibly_damaging(0.606) TCGA-LP-A4AV-01 X 155011033 155011033 C A SPRY3 3'UTR 0.44 TCGA-LP-A4AV-01 X 21996088 21996088 G A SMS Silent p.E172E 0.17 TCGA-LP-A4AV-01 X 24229871 24229871 C T ZFX 3'UTR 0.25 TCGA-LP-A4AV-01 X 27765223 27765223 C T DCAF8L2 Nonsense_Mutation p.R71* 0.21 TCGA-LP-A4AV-01 X 34646179 34646179 G A TMEM47 3'UTR 0.41 TCGA-LP-A4AV-01 X 38535082 38535082 C G TSPAN7 Missense_Mutation p.L189V 0.21 tolerated(1) benign(0.007) TCGA-LP-A4AV-01 X 44833908 44833908 C T KDM6A Intron 0.22 TCGA-LP-A4AV-01 X 44949031 44949031 G A KDM6A Missense_Mutation p.E1198K 0.27 deleterious(0) probably_damaging(0.943) TCGA-LP-A4AV-01 X 46457518 46457518 G C CHST7 3'UTR 0.31 TCGA-LP-A4AV-01 X 47098791 47098791 G A USP11 Missense_Mutation p.E153K 0.31 tolerated(0.51) benign(0.044) TCGA-LP-A4AV-01 X 48047168 48047168 C A SSX5 Splice_Site p.X197_splice 0.20 TCGA-LP-A4AV-01 X 53262507 53262507 G A IQSEC2 3'UTR 0.24 TCGA-LP-A4AV-01 X 53459255 53459255 C A HSD17B10 Missense_Mutation p.K99N 0.34 deleterious(0) possibly_damaging(0.625) TCGA-LP-A4AV-01 X 54048782 54048782 G A PHF8 Missense_Mutation p.S104F 0.22 tolerated(0.71) benign(0.019) TCGA-LP-A4AV-01 X 54099019 54099019 A T FAM120C 3'UTR 0.23 TCGA-LP-A4AV-01 X 70326271 70326271 G A CXorf65 Nonsense_Mutation p.Q11* 0.27 TCGA-LP-A4AV-01 X 70516458 70516458 G C NONO Missense_Mutation p.D232H 0.22 deleterious(0) probably_damaging(0.971) TCGA-LP-A4AV-01 X 70618466 70618466 G A TAF1 Missense_Mutation p.R1242Q 0.21 deleterious(0.04) benign(0.056) TCGA-LP-A4AV-01 X 70793972 70793972 C T OGT 3'UTR 0.34 TCGA-LP-A4AW-01 10 112650326 112650326 T A PDCD4 Missense_Mutation p.D296E 0.18 tolerated(0.25) benign(0.022) TCGA-LP-A4AW-01 10 11912852 11912853 - A PROSER2 3'UTR 0.50 TCGA-LP-A4AW-01 10 125798102 125798102 C T CHST15 Silent p.L373L 0.26 TCGA-LP-A4AW-01 10 30604919 30604919 G A MTPAP Silent p.F453F 0.19 TCGA-LP-A4AW-01 10 45480397 45480397 C T RASSF4 Silent p.N170N 0.16 TCGA-LP-A4AW-01 10 50174717 50174717 A T WDFY4 Missense_Mutation p.K2861N 0.16 deleterious(0.02) possibly_damaging(0.821) TCGA-LP-A4AW-01 10 50819083 50819083 G A SLC18A3 Silent p.A99A 0.23 TCGA-LP-A4AW-01 10 73520432 73520432 T C C10orf54 Intron 0.23 TCGA-LP-A4AW-01 10 74999103 74999103 G C FAM149B1 Missense_Mutation p.E546Q 0.17 deleterious(0) probably_damaging(0.986) TCGA-LP-A4AW-01 10 75277079 75277079 G A USP54 Silent p.P1035P 0.13 TCGA-LP-A4AW-01 10 76994715 76994715 C T COMTD1 Silent p.K161K 0.15 TCGA-LP-A4AW-01 10 8116162 8116162 C T GATA3 3'UTR 0.21 TCGA-LP-A4AW-01 11 111896985 111896985 G C DLAT Missense_Mutation p.E115Q 0.17 deleterious(0) probably_damaging(1) TCGA-LP-A4AW-01 11 132812831 132812831 C T OPCML Missense_Mutation p.A53T 0.22 deleterious(0.03) benign(0.148) TCGA-LP-A4AW-01 11 134063985 134063985 G A NCAPD3 Silent p.L584L 0.14 TCGA-LP-A4AW-01 11 31816307 31816307 C G PAX6 Missense_Mutation p.E199Q 0.13 tolerated(0.12) benign(0.011) TCGA-LP-A4AW-01 11 5536549 5536549 G A UBQLNL Missense_Mutation p.R375W 0.14 deleterious(0) benign(0.332) TCGA-LP-A4AW-01 11 62369823 62369823 G A EML3 3'UTR 0.21 TCGA-LP-A4AW-01 11 64005915 64005915 G C VEGFB 3'UTR 0.17 TCGA-LP-A4AW-01 11 67795656 67795656 C G ALDH3B1 3'UTR 0.23 TCGA-LP-A4AW-01 11 68529068 68529068 G A CPT1A Missense_Mutation p.R655C 0.16 deleterious(0) probably_damaging(1) TCGA-LP-A4AW-01 11 69486572 69486572 C A ORAOV1 Missense_Mutation p.G58C 0.23 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AW-01 11 71504429 71504429 G A FAM86C1 Missense_Mutation p.E55K 0.18 deleterious(0.02) benign(0.035) TCGA-LP-A4AW-01 11 82644096 82644096 A C C11orf82 Silent p.L572L 0.21 TCGA-LP-A4AW-01 11 93462835 93462835 G C KIAA1731 Missense_Mutation p.K2485N 0.07 deleterious(0.01) possibly_damaging(0.795) TCGA-LP-A4AW-01 12 100598771 100598771 C A ACTR6 Missense_Mutation p.T41N 0.11 deleterious(0) probably_damaging(0.998) TCGA-LP-A4AW-01 12 101522285 101522285 A G ANO4 3'UTR 0.12 TCGA-LP-A4AW-01 12 116421167 116421167 A T MED13L Silent p.S1570S 0.17 TCGA-LP-A4AW-01 12 129558618 129558618 G A TMEM132D Silent p.P1034P 0.20 TCGA-LP-A4AW-01 12 131649743 131649743 T C RP11-638F5.1 RNA 0.28 TCGA-LP-A4AW-01 12 14993782 14993782 A T ART4 Nonsense_Mutation p.Y150* 0.18 TCGA-LP-A4AW-01 12 2690795 2690795 G A CACNA1C Silent p.L645L 0.13 TCGA-LP-A4AW-01 12 52449047 52449047 C T NR4A1 Intron 0.16 TCGA-LP-A4AW-01 12 6754443 6754443 C G ACRBP Missense_Mutation p.A140P 0.14 tolerated(0.19) possibly_damaging(0.464) TCGA-LP-A4AW-01 13 114550997 114550997 A T GAS6 Splice_Site p.X94_splice 0.32 TCGA-LP-A4AW-01 13 32972342 32972342 C A BRCA2 Nonsense_Mutation p.S3231* 0.29 TCGA-LP-A4AW-01 14 105259018 105259018 C G AKT1 5'UTR 0.19 TCGA-LP-A4AW-01 14 105408592 105408592 G A AHNAK2 Missense_Mutation p.P4399L 0.21 probably_damaging(0.999) TCGA-LP-A4AW-01 14 23235786 23235786 G C OXA1L Missense_Mutation p.R19P 0.35 tolerated_low_confidence(0.18) benign(0) TCGA-LP-A4AW-01 14 24838499 24838499 C A NFATC4 Intron 0.24 TCGA-LP-A4AW-01 14 59114310 59114310 G C DACT1 3'Flank 0.20 TCGA-LP-A4AW-01 14 65253258 65253258 C T SPTB Missense_Mutation p.R1142Q 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-LP-A4AW-01 14 94394853 94394853 C A FAM181A Missense_Mutation p.D136E 0.11 tolerated(0.08) benign(0.041) TCGA-LP-A4AW-01 15 24922666 24922666 C T NPAP1 Missense_Mutation p.T551M 0.16 tolerated(0.27) benign(0.072) TCGA-LP-A4AW-01 15 31341662 31341662 G A TRPM1 Silent p.V513V 0.20 TCGA-LP-A4AW-01 15 42987423 42987423 G A STARD9 Missense_Mutation p.A4350T 0.20 probably_damaging(0.939) TCGA-LP-A4AW-01 15 52251016 52251016 C G LEO1 Missense_Mutation p.D390H 0.24 deleterious(0.04) probably_damaging(0.967) TCGA-LP-A4AW-01 15 56385033 56385033 A T RFX7 3'UTR 0.24 TCGA-LP-A4AW-01 15 66797732 66797732 G A ZWILCH Intron 0.11 TCGA-LP-A4AW-01 15 72106369 72106369 G A CTD-2524L6.3 5'Flank 0.17 TCGA-LP-A4AW-01 15 89055770 89055770 G C DET1 3'UTR 0.23 TCGA-LP-A4AW-01 16 30309781 30309781 C T RP11-347C12.2 RNA 0.18 TCGA-LP-A4AW-01 16 31100087 31100087 G T PRSS53 Missense_Mutation p.T15K 0.21 tolerated_low_confidence(0.15) benign(0.001) TCGA-LP-A4AW-01 16 51170772 51170772 A C SALL1 3'UTR 0.19 TCGA-LP-A4AW-01 16 5134662 5134662 G T FAM86A 3'UTR 0.18 TCGA-LP-A4AW-01 16 72832329 72832329 G A ZFHX3 Missense_Mutation p.L1418F 0.20 probably_damaging(0.991) TCGA-LP-A4AW-01 16 81411225 81411225 G A GAN 3'UTR 0.14 TCGA-LP-A4AW-01 17 32612827 32612827 C G CCL11 5'UTR 0.14 TCGA-LP-A4AW-01 17 73745051 73745051 G A ITGB4 Missense_Mutation p.V1081I 0.17 tolerated(1) benign(0.006) TCGA-LP-A4AW-01 17 79650079 79650079 G C ARL16 Missense_Mutation p.I90M 0.12 deleterious(0.02) probably_damaging(0.954) TCGA-LP-A4AW-01 18 34387880 34387880 C T TPGS2 Missense_Mutation p.M61I 0.23 deleterious(0.03) benign(0.041) TCGA-LP-A4AW-01 18 34839128 34839128 G C CELF4 Intron 0.10 TCGA-LP-A4AW-01 19 10463746 10463746 T C TYK2 Missense_Mutation p.Y1019C 0.15 deleterious(0) probably_damaging(0.997) TCGA-LP-A4AW-01 19 31770571 31770571 G C TSHZ3 Missense_Mutation p.A43G 0.19 tolerated(0.27) benign(0.237) TCGA-LP-A4AW-01 19 33872552 33872552 C G CEBPG 3'UTR 0.12 TCGA-LP-A4AW-01 19 36330418 36330418 C A NPHS1 Silent p.L969L 0.26 TCGA-LP-A4AW-01 19 3728677 3728677 G A TJP3 Missense_Mutation p.V51M 0.08 deleterious(0) probably_damaging(0.995) TCGA-LP-A4AW-01 19 43414733 43414733 G A PSG6 Silent p.L235L 0.19 TCGA-LP-A4AW-01 19 46838184 46838184 C A HIF3A Missense_Mutation p.P618Q 0.16 tolerated_low_confidence(0.47) benign(0.007) TCGA-LP-A4AW-01 19 51506516 51506516 C G KLK9 Missense_Mutation p.G202R 0.17 deleterious(0) probably_damaging(1) TCGA-LP-A4AW-01 19 58384192 58384193 AT - ZNF814 Frame_Shift_Del p.I855M 0.12 TCGA-LP-A4AW-01 19 759915 759915 C A MISP Missense_Mutation p.T596K 0.15 tolerated(0.06) benign(0.021) TCGA-LP-A4AW-01 19 9088981 9088981 G A MUC16 Missense_Mutation p.T945M 0.23 unknown(0) TCGA-LP-A4AW-01 1 116380753 116380753 C T NHLH2 Missense_Mutation p.A81T 0.37 deleterious(0.02) possibly_damaging(0.905) TCGA-LP-A4AW-01 1 118512716 118512716 G A SPAG17 Missense_Mutation p.P2117L 0.24 deleterious(0.03) benign(0.259) TCGA-LP-A4AW-01 1 151316236 151316236 G A RFX5 Silent p.V226V 0.25 TCGA-LP-A4AW-01 1 152287917 152287917 C T FLG Missense_Mutation p.E6K 0.13 benign(0.201) TCGA-LP-A4AW-01 1 157514053 157514053 C G FCRL5 Missense_Mutation p.Q281H 0.33 tolerated(0.06) benign(0.097) TCGA-LP-A4AW-01 1 17394687 17394687 G C PADI2 3'UTR 0.09 TCGA-LP-A4AW-01 1 181768236 181768236 C T CACNA1E 3'Flank 0.17 TCGA-LP-A4AW-01 1 228524733 228524733 C T OBSCN Silent p.L6479L 0.26 TCGA-LP-A4AW-01 1 3768984 3768984 G A CEP104 Intron 0.16 TCGA-LP-A4AW-01 1 84991612 84991612 C T SPATA1 RNA 0.16 TCGA-LP-A4AW-01 20 20493273 20493273 G A RALGAPA2 Silent p.F1580F 0.19 TCGA-LP-A4AW-01 20 32659947 32659947 G C RALY Missense_Mutation p.V23L 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-LP-A4AW-01 20 34022198 34022198 T G GDF5 Missense_Mutation p.K339Q 0.16 deleterious(0.01) possibly_damaging(0.561) TCGA-LP-A4AW-01 20 34022199 34022199 C A GDF5 Missense_Mutation p.E338D 0.16 deleterious(0.01) benign(0.142) TCGA-LP-A4AW-01 20 34542380 34542380 G A SCAND1 5'UTR 0.17 TCGA-LP-A4AW-01 20 47895230 47895230 G C ZNFX1 5'Flank 0.31 TCGA-LP-A4AW-01 20 61473283 61473283 G C TCFL5 3'UTR 0.18 TCGA-LP-A4AW-01 21 10943000 10943000 A T TPTE Missense_Mutation p.L196H 0.05 tolerated(0.54) benign(0.126) TCGA-LP-A4AW-01 22 26937098 26937098 C A TPST2 Missense_Mutation p.V167F 0.16 deleterious(0.03) benign(0.44) TCGA-LP-A4AW-01 22 37482381 37482381 C G TMPRSS6 Missense_Mutation p.K314N 0.14 deleterious(0.01) possibly_damaging(0.694) TCGA-LP-A4AW-01 2 130877734 130877734 C T POTEF Missense_Mutation p.A119T 0.17 tolerated_low_confidence(0.13) benign(0.061) TCGA-LP-A4AW-01 2 152394431 152394431 A G NEB Silent p.R7019R 0.14 TCGA-LP-A4AW-01 2 165946749 165946749 T A SCN3A Missense_Mutation p.S1972C 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-LP-A4AW-01 2 183702723 183702723 C A FRZB Missense_Mutation p.G272C 0.12 deleterious(0) probably_damaging(0.994) TCGA-LP-A4AW-01 2 202625678 202625678 C T ALS2 Missense_Mutation p.E347K 0.12 tolerated(0.09) benign(0.04) TCGA-LP-A4AW-01 2 202965171 202965171 A T AC079354.1 Missense_Mutation p.K385M 0.20 deleterious(0) probably_damaging(0.997) TCGA-LP-A4AW-01 2 203155898 203155898 G T NOP58 Nonsense_Mutation p.E229* 0.20 TCGA-LP-A4AW-01 2 203990756 203990756 C G NBEAL1 Missense_Mutation p.I946M 0.08 deleterious(0) possibly_damaging(0.643) TCGA-LP-A4AW-01 2 206662646 206662646 A G NRP2 3'UTR 0.12 TCGA-LP-A4AW-01 2 208434952 208434952 G C CREB1 Missense_Mutation p.E152Q 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-LP-A4AW-01 2 208631837 208631837 G A FZD5 Missense_Mutation p.R543C 0.19 deleterious(0.02) benign(0.27) TCGA-LP-A4AW-01 3 105377518 105377518 T G CBLB 3'UTR 0.06 TCGA-LP-A4AW-01 3 130394249 130394249 C A COL6A6 3'UTR 0.31 TCGA-LP-A4AW-01 3 149485314 149485314 A G ANKUB1 Missense_Mutation p.S379P 0.08 tolerated(1) benign(0) TCGA-LP-A4AW-01 3 38271862 38271862 G C OXSR1 Missense_Mutation p.E298Q 0.50 tolerated(0.05) benign(0.234) TCGA-LP-A4AW-01 3 40299719 40299719 C A MYRIP 3'UTR 0.12 TCGA-LP-A4AW-01 3 41265708 41265710 CTC - CTNNB1 Intron 0.41 TCGA-LP-A4AW-01 3 48327957 48327957 G T Y_RNA 5'Flank 0.23 TCGA-LP-A4AW-01 3 48895114 48895114 C T SLC25A20 3'UTR 0.17 TCGA-LP-A4AW-01 4 122082291 122082291 C A TNIP3 Missense_Mutation p.E126D 0.14 deleterious(0) probably_damaging(0.99) TCGA-LP-A4AW-01 4 158285724 158285724 C T GRIA2 3'UTR 0.12 TCGA-LP-A4AW-01 4 164048226 164048226 G T NAF1 3'Flank 0.14 TCGA-LP-A4AW-01 4 187542656 187542656 G C FAT1 Nonsense_Mutation p.S1695* 0.14 TCGA-LP-A4AW-01 4 38051422 38051422 C T TBC1D1 Nonsense_Mutation p.Q605* 0.19 TCGA-LP-A4AW-01 4 56686283 56686283 G A RP11-345F18.1 RNA 0.24 TCGA-LP-A4AW-01 4 80827711 80827711 G T ANTXR2 3'UTR 0.43 TCGA-LP-A4AW-01 4 99397456 99397456 C G TSPAN5 Missense_Mutation p.E209Q 0.11 tolerated(0.45) benign(0.311) TCGA-LP-A4AW-01 5 127641259 127641259 C G FBN2 Missense_Mutation p.S1873T 0.24 deleterious(0.01) possibly_damaging(0.654) TCGA-LP-A4AW-01 5 13920589 13920589 C G DNAH5 Missense_Mutation p.Q266H 0.14 possibly_damaging(0.522) TCGA-LP-A4AW-01 5 170148834 170148834 T C KCNIP1 Intron 0.21 TCGA-LP-A4AW-01 5 176520523 176520523 C T FGFR4 Silent p.L456L 0.26 TCGA-LP-A4AW-01 5 32444839 32444839 G C ZFR 5'UTR 0.27 TCGA-LP-A4AW-01 5 33576359 33576359 C G ADAMTS12 Missense_Mutation p.E1258Q 0.19 tolerated(0.53) benign(0.03) TCGA-LP-A4AW-01 5 37065661 37065661 T C NIPBL 3'UTR 0.13 TCGA-LP-A4AW-01 5 67591146 67591147 - CTT PIK3R1 In_Frame_Ins p.Y580_L581insF 0.38 TCGA-LP-A4AW-01 6 109835543 109835543 T C AK9 Missense_Mutation p.E1388G 0.19 deleterious(0) possibly_damaging(0.584) TCGA-LP-A4AW-01 6 152603026 152603026 G T SYNE1 Silent p.L6099L 0.17 TCGA-LP-A4AW-01 6 152746609 152746610 GA - SYNE1 Frame_Shift_Del p.V1726Sfs*5 0.12 TCGA-LP-A4AW-01 6 17292245 17292245 C T RBM24 Silent p.T202T 0.46 TCGA-LP-A4AW-01 6 2990535 2990535 C T LINC01011 RNA 0.11 TCGA-LP-A4AW-01 6 30298611 30298611 T C TRIM39 Silent p.T169T 0.18 TCGA-LP-A4AW-01 6 30672609 30672609 T C MDC1 Missense_Mutation p.T1451A 0.23 tolerated(0.1) possibly_damaging(0.675) TCGA-LP-A4AW-01 6 30673161 30673161 G C MDC1 Missense_Mutation p.Q1267E 0.11 tolerated(0.19) benign(0.004) TCGA-LP-A4AW-01 6 33263343 33263343 C T RGL2 Missense_Mutation p.R321Q 0.16 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-LP-A4AW-01 6 33634963 33634963 C T ITPR3 Missense_Mutation p.R537W 0.09 deleterious(0) probably_damaging(0.968) TCGA-LP-A4AW-01 6 70992824 70992824 G C COL9A1 Intron 0.29 TCGA-LP-A4AW-01 6 93952734 93952734 G A EPHA7 3'UTR 0.21 TCGA-LP-A4AW-01 7 100552288 100552288 G A MUC3A Missense_Mutation p.E347K 0.15 tolerated(0.23) benign(0.046) TCGA-LP-A4AW-01 7 121513476 121513476 C T PTPRZ1 5'UTR 0.19 TCGA-LP-A4AW-01 7 135390911 135390911 G A SLC13A4 Missense_Mutation p.A168V 0.14 tolerated(0.2) benign(0.022) TCGA-LP-A4AW-01 7 150648846 150648846 G A KCNH2 Silent p.Y545Y 0.19 TCGA-LP-A4AW-01 7 154379552 154379552 T G DPP6 Intron 0.19 TCGA-LP-A4AW-01 7 29438060 29438060 G C CHN2 Missense_Mutation p.R83T 0.13 deleterious(0) probably_damaging(0.994) TCGA-LP-A4AW-01 7 30671904 30671904 G A GARS Missense_Mutation p.D649N 0.29 tolerated(0.06) probably_damaging(0.935) TCGA-LP-A4AW-01 7 73246873 73246873 G T CLDN4 3'UTR 0.21 TCGA-LP-A4AW-01 7 77648173 77648173 T C MAGI2 3'UTR 0.16 TCGA-LP-A4AW-01 7 94167172 94167172 T C CASD1 Missense_Mutation p.V411A 0.19 tolerated(0.38) benign(0.242) TCGA-LP-A4AW-01 8 106431433 106431433 C A ZFPM2 Silent p.I34I 0.15 TCGA-LP-A4AW-01 8 145738395 145738395 G C RECQL4 Missense_Mutation p.Q864E 0.08 tolerated(0.32) benign(0.005) TCGA-LP-A4AW-01 8 6360664 6360664 C T ANGPT2 Silent p.S483S 0.18 TCGA-LP-A4AW-01 8 67576721 67576721 C A VCPIP1 Nonsense_Mutation p.E825* 0.24 TCGA-LP-A4AW-01 8 72938296 72938296 T G TRPA1 Missense_Mutation p.T984P 0.13 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AW-01 9 135942276 135942276 G A CEL Missense_Mutation p.G244S 0.16 deleterious(0.01) probably_damaging(1) TCGA-LP-A4AW-01 9 139907165 139907165 G A ABCA2 Missense_Mutation p.R1694W 0.23 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AW-01 9 33366700 33366700 C T NFX1 Missense_Mutation p.A1038V 0.12 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AW-01 9 37486420 37486420 C T POLR1E Intron 0.14 TCGA-LP-A4AW-01 9 95609815 95609815 C T ZNF484 Silent p.G420G 0.17 TCGA-LP-A4AW-01 X 102472081 102472090 ATAATGTGTC - BEX4 3'UTR 0.13 TCGA-LP-A4AW-01 X 105452282 105452282 C G MUM1L1 3'UTR 0.21 TCGA-LP-A4AW-01 X 11781979 11781979 A G MSL3 Missense_Mutation p.Y277C 0.17 tolerated(0.19) benign(0.026) TCGA-LP-A4AW-01 X 118603841 118603841 G - SLC25A5 Frame_Shift_Del p.W110Cfs*32 0.27 TCGA-LP-A4AW-01 X 120182357 120182357 C T GLUD2 Silent p.G273G 0.14 TCGA-LP-A4AW-01 X 152089261 152089261 C T ZNF185 Nonsense_Mutation p.Q208* 0.34 TCGA-LP-A4AW-01 X 16804696 16804696 G A TXLNG Missense_Mutation p.R29H 0.18 deleterious_low_confidence(0.04) unknown(0) TCGA-LP-A4AW-01 X 16804697 16804697 C A TXLNG Silent p.R29R 0.18 TCGA-LP-A4AW-01 X 2184919 2184919 A T DHRSX Missense_Mutation p.L153Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-LP-A4AW-01 X 48886990 48886990 G C TFE3 3'UTR 0.19 TCGA-LP-A4AW-01 X 53430536 53430536 T G SMC1A Missense_Mutation p.E794D 0.14 tolerated(0.18) possibly_damaging(0.539) TCGA-LP-A4AW-01 X 69640395 69640402 GTCAAGTT - KIF4A 3'UTR 0.12 TCGA-LP-A4AW-01 X 77912937 77912937 C T ZCCHC5 Silent p.Q327Q 0.23 TCGA-LP-A4AW-01 X 99849347 99849347 G T TNMD Missense_Mutation p.E137D 0.30 tolerated(0.61) benign(0.03) TCGA-LP-A4AX-01 10 5493809 5493809 G C NET1 Missense_Mutation p.R91T 0.12 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AX-01 10 81371363 81371363 G A SFTPA1 5'UTR 0.21 TCGA-LP-A4AX-01 11 57507942 57507942 C A TMX2 3'UTR 0.28 TCGA-LP-A4AX-01 11 74554326 74554326 C G XRRA1 Missense_Mutation p.E766D 0.43 tolerated_low_confidence(0.12) benign(0.026) TCGA-LP-A4AX-01 13 32691498 32691498 G A FRY Missense_Mutation p.E118K 0.33 deleterious(0) probably_damaging(0.925) TCGA-LP-A4AX-01 13 46802139 46802139 C T LRRC63 Missense_Mutation p.S193L 0.14 tolerated(1) benign(0.002) TCGA-LP-A4AX-01 14 25288491 25288491 G T STXBP6 Intron 0.29 TCGA-LP-A4AX-01 14 89300049 89300049 G A TTC8 Missense_Mutation p.E43K 0.11 tolerated_low_confidence(0.59) benign(0.006) TCGA-LP-A4AX-01 14 96811053 96811053 C G ATG2B Missense_Mutation p.L173F 0.19 tolerated(0.06) probably_damaging(0.986) TCGA-LP-A4AX-01 15 52513369 52513369 C G MYO5C Missense_Mutation p.E1237D 0.10 tolerated(0.4) benign(0.001) TCGA-LP-A4AX-01 15 80762742 80762742 C T ARNT2 Silent p.G126G 0.15 TCGA-LP-A4AX-01 16 70416789 70416789 G C ST3GAL2 Missense_Mutation p.H266Q 0.31 probably_damaging(1) TCGA-LP-A4AX-01 17 29227461 29227461 T G TEFM Silent p.G205G 0.26 TCGA-LP-A4AX-01 17 38562885 38562885 C A TOP2A Missense_Mutation p.W598C 0.23 deleterious(0) probably_damaging(1) TCGA-LP-A4AX-01 17 38975036 38975037 - ACCT KRT10 Intron 0.29 TCGA-LP-A4AX-01 17 65337163 65337163 G A PSMD12 Silent p.S389S 0.14 TCGA-LP-A4AX-01 17 73102146 73102146 G A SLC16A5 3'UTR 0.25 TCGA-LP-A4AX-01 17 8381716 8381716 C T MYH10 Silent p.L1882L 0.24 TCGA-LP-A4AX-01 19 2210818 2210818 C T DOT1L Nonsense_Mutation p.Q439* 0.53 TCGA-LP-A4AX-01 19 39805372 39805372 G A LRFN1 Missense_Mutation p.A202V 0.16 deleterious(0.01) possibly_damaging(0.905) TCGA-LP-A4AX-01 1 152324211 152324211 C G FLG2 Missense_Mutation p.Q2017H 0.16 possibly_damaging(0.781) TCGA-LP-A4AX-01 1 175336341 175336341 C T TNR Intron 0.21 TCGA-LP-A4AX-01 1 184446657 184446657 C T C1orf21 Missense_Mutation p.S5F 0.30 deleterious(0) probably_damaging(0.983) TCGA-LP-A4AX-01 1 198721825 198721825 A T PTPRC Nonsense_Mutation p.K1145* 0.25 TCGA-LP-A4AX-01 1 202302388 202302388 C T UBE2T Missense_Mutation p.D121N 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-LP-A4AX-01 1 213189017 213189017 C T ANGEL2 5'UTR 0.20 TCGA-LP-A4AX-01 1 25634201 25634201 G C RHD Intron 0.23 TCGA-LP-A4AX-01 1 84701869 84701869 G C PRKACB 3'UTR 0.22 TCGA-LP-A4AX-01 20 33513535 33513535 C T ACSS2 Silent p.I577I 0.14 TCGA-LP-A4AX-01 20 47691934 47691934 C A CSE1L Silent p.I404I 0.38 TCGA-LP-A4AX-01 20 60498574 60498574 G C CDH4 Silent p.L480L 0.36 TCGA-LP-A4AX-01 21 30698588 30698588 C T BACH1 Missense_Mutation p.S148L 0.27 deleterious(0.01) benign(0.073) TCGA-LP-A4AX-01 2 121989525 121989525 C G TFCP2L1 Silent p.L406L 0.11 TCGA-LP-A4AX-01 2 166247840 166247840 C A SCN2A 3'UTR 0.21 TCGA-LP-A4AX-01 2 169983693 169983693 C A LRP2 3'UTR 0.09 TCGA-LP-A4AX-01 2 169983694 169983694 A T LRP2 3'UTR 0.09 TCGA-LP-A4AX-01 2 179611840 179611840 G C TTN Intron 0.17 TCGA-LP-A4AX-01 2 1921047 1921047 G A MYT1L Silent p.H514H 0.21 TCGA-LP-A4AX-01 2 27905202 27905202 C A SLC4A1AP Missense_Mutation p.F617L 0.38 deleterious(0.02) benign(0.302) TCGA-LP-A4AX-01 3 137816688 137816688 C T DZIP1L Missense_Mutation p.C168Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-LP-A4AX-01 3 184675307 184675307 C T VPS8 Nonsense_Mutation p.Q1061* 0.14 TCGA-LP-A4AX-01 3 52816048 52816048 C T ITIH1 Silent p.Y260Y 0.30 TCGA-LP-A4AX-01 3 89529068 89529068 C A EPHA3 3'UTR 0.21 TCGA-LP-A4AX-01 4 39606751 39606751 T C SMIM14 Silent p.G5G 0.39 TCGA-LP-A4AX-01 4 39868556 39868556 G C PDS5A Missense_Mutation p.S856C 0.36 deleterious(0) probably_damaging(0.998) TCGA-LP-A4AX-01 4 72934687 72934687 C T NPFFR2 Intron 0.29 TCGA-LP-A4AX-01 5 140531440 140531440 C T PCDHB6 Silent p.R534R 0.19 TCGA-LP-A4AX-01 5 147889077 147889077 G C HTR4 Missense_Mutation p.L340V 0.17 deleterious(0.03) benign(0.071) TCGA-LP-A4AX-01 5 147889204 147889204 G A HTR4 Silent p.F297F 0.19 TCGA-LP-A4AX-01 5 177665114 177665114 G T COL23A1 3'UTR 0.19 TCGA-LP-A4AX-01 5 65058893 65058893 G A NLN Missense_Mutation p.M136I 0.25 tolerated(0.25) benign(0.03) TCGA-LP-A4AX-01 6 149719189 149719189 C G TAB2 Missense_Mutation p.Q617E 0.17 deleterious(0.01) probably_damaging(0.965) TCGA-LP-A4AX-01 6 152555007 152555007 G C SYNE1 Missense_Mutation p.T6874R 0.27 benign(0.292) TCGA-LP-A4AX-01 6 155581523 155581523 G A TFB1M Silent p.G226G 0.23 TCGA-LP-A4AX-01 6 157530253 157530253 A G ARID1B 3'UTR 0.22 TCGA-LP-A4AX-01 6 26104310 26104310 G C HIST1H4C Missense_Mutation p.K45N 0.22 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-LP-A4AX-01 6 32134696 32134696 C T EGFL8 Missense_Mutation p.A115V 0.25 tolerated(0.57) benign(0.171) TCGA-LP-A4AX-01 6 33264540 33264542 GGA - RGL2 In_Frame_Del p.P86del 0.19 TCGA-LP-A4AX-01 6 36564728 36564728 C T SRSF3 Silent p.V63V 0.10 TCGA-LP-A4AX-01 7 149508049 149508049 G A SSPO RNA 0.30 TCGA-LP-A4AX-01 7 2740305 2740305 C T AMZ1 Missense_Mutation p.P74S 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-LP-A4AX-01 8 110476533 110476533 G A PKHD1L1 Missense_Mutation p.R2491K 0.19 tolerated(0.12) benign(0.02) TCGA-LP-A4AX-01 8 117868503 117868503 G A RAD21 Missense_Mutation p.S280L 0.17 tolerated(0.1) benign(0.096) TCGA-LP-A4AX-01 8 27294966 27294966 G A PTK2B Missense_Mutation p.E494K 0.18 deleterious(0.04) benign(0.173) TCGA-LP-A4AX-01 8 61778087 61778087 T C CHD7 Silent p.A2863A 0.27 TCGA-LP-A4AX-01 8 68110038 68110038 C T ARFGEF1 3'UTR 0.26 TCGA-LP-A4AX-01 8 72129214 72129214 G A EYA1 Silent p.N395N 0.15 TCGA-LP-A4AX-01 8 77763451 77763451 C T ZFHX4 Missense_Mutation p.R1432C 0.13 possibly_damaging(0.835) TCGA-LP-A4AX-01 8 92982945 92982945 T A RUNX1T1 Nonsense_Mutation p.K505* 0.20 TCGA-LP-A4AX-01 X 23397865 23397865 A G PTCHD1 Missense_Mutation p.N170S 0.24 tolerated(0.78) benign(0.003) TCGA-LP-A4AX-01 X 31138058 31138058 G T DMD 3'UTR 0.22 TCGA-LP-A4AX-01 X 3761463 3761463 C G RP11-706O15.1 Missense_Mutation p.E21Q 0.20 tolerated_low_confidence(0.24) possibly_damaging(0.617) TCGA-LP-A4AX-01 X 73962042 73962042 T G KIAA2022 Missense_Mutation p.S784R 0.17 tolerated(0.11) benign(0.029) TCGA-LP-A5U2-01 10 102057141 102057141 C G PKD2L1 Silent p.L318L 0.20 TCGA-LP-A5U2-01 10 104309818 104309818 C T SUFU Missense_Mutation p.P137S 0.10 deleterious(0) probably_damaging(1) TCGA-LP-A5U2-01 10 104679638 104679638 C G CNNM2 Missense_Mutation p.F467L 0.41 deleterious(0) possibly_damaging(0.777) TCGA-LP-A5U2-01 10 118891588 118891588 G A VAX1 3'Flank 0.56 TCGA-LP-A5U2-01 10 119793517 119793517 C T RAB11FIP2 Intron 0.39 TCGA-LP-A5U2-01 10 121652374 121652374 C T SEC23IP Missense_Mutation p.S27L 0.42 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-LP-A5U2-01 10 13040405 13040405 G C CCDC3 Nonsense_Mutation p.S161* 0.29 TCGA-LP-A5U2-01 10 15175359 15175359 T G NMT2 Missense_Mutation p.E132A 0.25 deleterious(0.03) benign(0.056) TCGA-LP-A5U2-01 10 61829982 61829982 C T ANK3 Missense_Mutation p.E3553K 0.38 benign(0.014) TCGA-LP-A5U2-01 10 70426846 70426846 C T TET1 Silent p.V1502V 0.44 TCGA-LP-A5U2-01 10 70507287 70507287 C T CCAR1 Nonsense_Mutation p.Q264* 0.42 TCGA-LP-A5U2-01 10 79773485 79773485 C T POLR3A Missense_Mutation p.D499N 0.32 deleterious(0) probably_damaging(0.977) TCGA-LP-A5U2-01 10 88729960 88729960 C T ADIRF Missense_Mutation p.S22L 0.65 deleterious(0.02) benign(0.002) TCGA-LP-A5U2-01 10 88820784 88820784 G C GLUD1 Missense_Mutation p.S316C 0.56 tolerated(0.09) benign(0.12) TCGA-LP-A5U2-01 10 95719906 95719906 G C PIPSL RNA 0.38 TCGA-LP-A5U2-01 10 99330750 99330750 G T UBTD1 3'UTR 0.42 TCGA-LP-A5U2-01 11 103908875 103908875 G C DDI1 3'UTR 0.42 TCGA-LP-A5U2-01 11 108028659 108028659 C G NPAT 3'UTR 0.44 TCGA-LP-A5U2-01 11 119063888 119063888 C T CCDC153 Missense_Mutation p.E108K 0.34 tolerated(0.35) possibly_damaging(0.453) TCGA-LP-A5U2-01 11 133801384 133801384 G A IGSF9B Silent p.A444A 0.47 TCGA-LP-A5U2-01 11 280785 280785 G T NLRP6 Missense_Mutation p.D351Y 0.45 deleterious(0.01) probably_damaging(0.93) TCGA-LP-A5U2-01 11 290044 290044 G C ATHL1 Silent p.L76L 0.40 TCGA-LP-A5U2-01 11 30032518 30032518 C G KCNA4 Missense_Mutation p.E570Q 0.55 deleterious(0.01) possibly_damaging(0.886) TCGA-LP-A5U2-01 11 33762518 33762518 G A FBXO3 3'UTR 0.36 TCGA-LP-A5U2-01 11 33762698 33762698 G C FBXO3 3'UTR 0.41 TCGA-LP-A5U2-01 11 34155888 34155888 C T NAT10 Missense_Mutation p.S586F 0.42 deleterious(0) probably_damaging(0.91) TCGA-LP-A5U2-01 11 45955550 45955550 G A PHF21A Missense_Mutation p.A671V 0.31 tolerated_low_confidence(1) benign(0.003) TCGA-LP-A5U2-01 11 48186061 48186061 G A PTPRJ Silent p.Q1283Q 0.39 TCGA-LP-A5U2-01 11 5221348 5221348 G A OR51V1 Missense_Mutation p.R195C 0.32 deleterious(0.01) probably_damaging(0.952) TCGA-LP-A5U2-01 11 57156581 57156581 G A PRG2 Missense_Mutation p.P90S 0.16 deleterious(0) probably_damaging(1) TCGA-LP-A5U2-01 11 64003440 64003440 C T VEGFB Silent p.L87L 0.34 TCGA-LP-A5U2-01 11 64089124 64089124 C T PRDX5 Silent p.L202L 0.38 TCGA-LP-A5U2-01 11 65394439 65394439 C T PCNXL3 Silent p.L1148L 0.31 TCGA-LP-A5U2-01 11 68216290 68216290 C G LRP5 Missense_Mutation p.R1534G 0.43 tolerated(0.1) possibly_damaging(0.669) TCGA-LP-A5U2-01 11 76207494 76207494 C G C11orf30 Missense_Mutation p.I448M 0.37 deleterious(0) possibly_damaging(0.695) TCGA-LP-A5U2-01 11 77838404 77838404 C T ALG8 Silent p.E58E 0.36 TCGA-LP-A5U2-01 11 85435165 85435165 C T SYTL2 Missense_Mutation p.E779K 0.37 deleterious(0.01) benign(0.121) TCGA-LP-A5U2-01 11 8720516 8720516 C G ST5 Silent p.L968L 0.50 TCGA-LP-A5U2-01 11 92714917 92714917 C A MTNR1B Missense_Mutation p.F176L 0.24 tolerated(0.51) benign(0.023) TCGA-LP-A5U2-01 12 101759307 101759307 G C UTP20 Missense_Mutation p.G2010A 0.40 deleterious(0) probably_damaging(1) TCGA-LP-A5U2-01 12 109198894 109198894 C G SSH1 Missense_Mutation p.E298Q 0.25 tolerated(0.13) possibly_damaging(0.725) TCGA-LP-A5U2-01 12 111098987 111098987 G A HVCN1 Silent p.F96F 0.55 TCGA-LP-A5U2-01 12 113623726 113623726 C A RITA1 5'UTR 0.36 TCGA-LP-A5U2-01 12 120263013 120263013 C T CIT Missense_Mutation p.E305K 0.30 tolerated(0.15) possibly_damaging(0.593) TCGA-LP-A5U2-01 12 13061822 13061822 C T GPRC5A Silent p.I213I 0.60 TCGA-LP-A5U2-01 12 2690805 2690805 C T CACNA1C Missense_Mutation p.R649C 0.27 deleterious(0) possibly_damaging(0.851) TCGA-LP-A5U2-01 12 49444286 49444286 G A KMT2D Nonsense_Mutation p.Q1029* 0.50 TCGA-LP-A5U2-01 12 69053671 69053671 C G RAP1B 3'UTR 0.19 TCGA-LP-A5U2-01 12 91502639 91502639 C T LUM Missense_Mutation p.E40K 0.24 deleterious(0.03) probably_damaging(0.992) TCGA-LP-A5U2-01 12 9720633 9720633 G T RP11-726G1.1 RNA 0.28 TCGA-LP-A5U2-01 13 103460047 103460047 G C BIVM-ERCC5 Missense_Mutation p.D116H 0.41 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-LP-A5U2-01 13 111973291 111973291 C T TEX29 Silent p.F18F 0.53 TCGA-LP-A5U2-01 13 113681259 113681259 G A MCF2L Intron 0.26 TCGA-LP-A5U2-01 13 36049469 36049469 C G MAB21L1 Missense_Mutation p.L269F 0.52 deleterious(0.01) possibly_damaging(0.827) TCGA-LP-A5U2-01 13 41379374 41379374 G C SLC25A15 Missense_Mutation p.K145N 0.36 deleterious(0.04) benign(0.158) TCGA-LP-A5U2-01 13 45975286 45975286 G C SLC25A30 Silent p.V182V 0.33 TCGA-LP-A5U2-01 13 49772229 49772229 G A FNDC3A Missense_Mutation p.E868K 0.48 tolerated(0.69) benign(0.004) TCGA-LP-A5U2-01 13 77454991 77454991 G A KCTD12 3'UTR 0.53 TCGA-LP-A5U2-01 13 77574637 77574637 G C CLN5 Missense_Mutation p.E253Q 0.42 tolerated(0.15) possibly_damaging(0.818) TCGA-LP-A5U2-01 14 21526193 21526193 C G RNASE8 Missense_Mutation p.Q48E 0.51 tolerated(1) benign(0.01) TCGA-LP-A5U2-01 14 21994234 21994234 G A SALL2 Intron 0.20 TCGA-LP-A5U2-01 14 39870958 39870958 G C FBXO33 Missense_Mutation p.S273C 0.83 deleterious(0.02) benign(0.436) TCGA-LP-A5U2-01 14 50605348 50605348 C G SOS2 Silent p.R980R 0.42 TCGA-LP-A5U2-01 14 69255144 69255144 G A ZFP36L1 3'UTR 0.20 TCGA-LP-A5U2-01 14 71267556 71267556 G C MAP3K9 Silent p.L216L 0.64 TCGA-LP-A5U2-01 14 81862321 81862321 G A STON2 Missense_Mutation p.S97L 0.64 tolerated_low_confidence(0.1) benign(0.009) TCGA-LP-A5U2-01 15 101606067 101606067 G C LRRK1 Missense_Mutation p.E1809Q 0.21 tolerated_low_confidence(0.08) benign(0.006) TCGA-LP-A5U2-01 15 42566664 42566664 G C GANC 5'UTR 0.70 TCGA-LP-A5U2-01 15 74627326 74627326 C T CCDC33 Missense_Mutation p.S679L 0.42 deleterious(0) probably_damaging(0.943) TCGA-LP-A5U2-01 15 75190135 75190135 C G MPI 3'UTR 0.31 TCGA-LP-A5U2-01 15 82337845 82337845 C G MEX3B Missense_Mutation p.E68Q 0.52 deleterious(0.03) probably_damaging(0.942) TCGA-LP-A5U2-01 16 11770038 11770038 C T SNN Silent p.I41I 0.27 TCGA-LP-A5U2-01 16 1412897 1412897 G T GNPTG Silent p.T271T 0.35 TCGA-LP-A5U2-01 16 2415743 2415743 C G ABCA17P RNA 0.36 TCGA-LP-A5U2-01 16 2546389 2546389 G C RP11-20I23.1 Missense_Mutation p.K80N 0.46 tolerated(0.21) benign(0.091) TCGA-LP-A5U2-01 16 30006990 30006990 G C HIRIP3 5'UTR 0.35 TCGA-LP-A5U2-01 16 3708835 3708835 G A TRAP1 Missense_Mutation p.R658C 0.22 deleterious(0) probably_damaging(0.932) TCGA-LP-A5U2-01 16 66969530 66969530 G C CES2 Missense_Mutation p.E62Q 0.25 tolerated(0.18) benign(0.027) TCGA-LP-A5U2-01 16 67974031 67974031 C G LCAT Missense_Mutation p.D367H 0.57 deleterious(0) probably_damaging(0.997) TCGA-LP-A5U2-01 16 69117451 69117451 G A TANGO6 Missense_Mutation p.D1058N 0.40 deleterious(0) probably_damaging(0.998) TCGA-LP-A5U2-01 16 84132749 84132749 C G MBTPS1 Missense_Mutation p.Q110H 0.49 tolerated(0.16) benign(0.03) TCGA-LP-A5U2-01 16 84132775 84132775 C G MBTPS1 Missense_Mutation p.E102Q 0.50 tolerated(0.06) possibly_damaging(0.63) TCGA-LP-A5U2-01 17 16638763 16638763 C T CCDC144A Missense_Mutation p.H1060Y 0.44 tolerated(0.17) possibly_damaging(0.695) TCGA-LP-A5U2-01 17 17399493 17399493 C G RASD1 Translation_Start_Site p.M1? 0.49 deleterious_low_confidence(0) benign(0.003) TCGA-LP-A5U2-01 17 27286349 27286349 C T SEZ6 Intron 0.31 TCGA-LP-A5U2-01 17 28793946 28793946 C G CPD 3'UTR 0.50 TCGA-LP-A5U2-01 17 33984676 33984676 C T AP2B1 Nonsense_Mutation p.Q619* 0.32 TCGA-LP-A5U2-01 17 34072389 34072389 C G GAS2L2 Silent p.L709L 0.17 TCGA-LP-A5U2-01 17 34171813 34171813 G C TAF15 Missense_Mutation p.D504H 0.36 deleterious_low_confidence(0) unknown(0) TCGA-LP-A5U2-01 17 34581879 34581879 G A TBC1D3C Missense_Mutation p.P391S 0.42 deleterious(0) benign(0.064) TCGA-LP-A5U2-01 17 37566877 37566877 C G MED1 Missense_Mutation p.E533Q 0.33 deleterious(0.04) probably_damaging(0.998) TCGA-LP-A5U2-01 17 39782818 39782818 G A KRT17 5'Flank 0.50 TCGA-LP-A5U2-01 17 39887937 39887937 C T HAP1 Missense_Mutation p.E319K 0.26 tolerated(0.33) possibly_damaging(0.486) TCGA-LP-A5U2-01 17 44108722 44108722 C T KANSL1 3'UTR 0.25 TCGA-LP-A5U2-01 17 48539018 48539018 G A ACSF2 Missense_Mutation p.A160T 0.32 tolerated(0.66) possibly_damaging(0.794) TCGA-LP-A5U2-01 17 56385241 56385241 C G BZRAP1 Missense_Mutation p.R1598T 0.43 deleterious(0.03) benign(0.14) TCGA-LP-A5U2-01 17 58030204 58030204 G A RNFT1 3'UTR 0.20 TCGA-LP-A5U2-01 17 61949740 61949740 C G CSH2 Intron 0.59 TCGA-LP-A5U2-01 17 61988507 61988507 C T CSHL1 Intron 0.30 TCGA-LP-A5U2-01 17 7215292 7215292 G C EIF5A 3'UTR 0.50 TCGA-LP-A5U2-01 17 7215619 7215619 G C EIF5A 3'UTR 0.39 TCGA-LP-A5U2-01 17 74388179 74388179 G C UBE2O Missense_Mutation p.L988V 0.50 tolerated(0.61) possibly_damaging(0.654) TCGA-LP-A5U2-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.30 deleterious(0) probably_damaging(1) TCGA-LP-A5U2-01 17 76117780 76117780 C T TMC6 Missense_Mutation p.E414K 0.50 deleterious(0) benign(0.296) TCGA-LP-A5U2-01 17 76117792 76117792 C G TMC6 Missense_Mutation p.E410Q 0.53 deleterious(0.02) benign(0.391) TCGA-LP-A5U2-01 17 77681225 77681225 G C CTD-2116F7.1 RNA 0.47 TCGA-LP-A5U2-01 17 78320002 78320002 C G RNF213 Missense_Mutation p.Q2623E 0.29 probably_damaging(0.996) TCGA-LP-A5U2-01 17 78449452 78449452 C T NPTX1 Missense_Mutation p.D171N 0.63 tolerated(0.24) benign(0.006) TCGA-LP-A5U2-01 17 7942715 7942715 C T ALOX15B Silent p.F53F 0.45 TCGA-LP-A5U2-01 17 80789924 80789924 G T ZNF750 Nonsense_Mutation p.S136* 0.33 TCGA-LP-A5U2-01 17 8638461 8638461 C T CCDC42 Missense_Mutation p.E276K 0.46 tolerated(0.39) benign(0.272) TCGA-LP-A5U2-01 18 29045334 29045334 C G DSG3 Missense_Mutation p.A442G 0.93 tolerated(1) benign(0.113) TCGA-LP-A5U2-01 18 29045341 29045341 C G DSG3 Missense_Mutation p.I444M 0.92 deleterious(0) probably_damaging(0.999) TCGA-LP-A5U2-01 18 29045395 29045395 C T DSG3 Silent p.I462I 0.80 TCGA-LP-A5U2-01 18 46238059 46238059 G C CTIF Missense_Mutation p.D193H 0.87 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-LP-A5U2-01 19 11032669 11032669 G A CARM1 3'UTR 0.63 TCGA-LP-A5U2-01 19 12222435 12222435 G C ZNF788 Missense_Mutation p.E25Q 0.35 tolerated(0.59) benign(0) TCGA-LP-A5U2-01 19 1234584 1234584 G C C19orf26 Missense_Mutation p.L205V 0.51 tolerated(0.08) possibly_damaging(0.803) TCGA-LP-A5U2-01 19 15342841 15342841 C T EPHX3 Missense_Mutation p.S61N 0.62 tolerated(0.42) benign(0.003) TCGA-LP-A5U2-01 19 21240265 21240265 G A ZNF430 Missense_Mutation p.R384Q 0.58 tolerated(0.99) benign(0.006) TCGA-LP-A5U2-01 19 22271993 22271993 C T ZNF257 Missense_Mutation p.H481Y 0.28 deleterious(0.02) possibly_damaging(0.871) TCGA-LP-A5U2-01 19 3119037 3119037 G A GNA11 Missense_Mutation p.E241K 0.68 deleterious(0.01) probably_damaging(0.964) TCGA-LP-A5U2-01 19 38945895 38945895 G C RYR1 Silent p.L487L 0.56 TCGA-LP-A5U2-01 19 39760613 39760613 G T IFNL2 Missense_Mutation p.R188L 0.35 deleterious(0.04) benign(0.05) TCGA-LP-A5U2-01 19 42592866 42592866 C G POU2F2 3'Flank 0.62 TCGA-LP-A5U2-01 19 43967923 43967923 T C LYPD3 Splice_Site p.X71_splice 0.25 TCGA-LP-A5U2-01 19 44302748 44302748 C T LYPD5 Missense_Mutation p.D126N 0.53 tolerated(1) benign(0.003) TCGA-LP-A5U2-01 19 45015098 45015098 G C CEACAM20 RNA 0.34 TCGA-LP-A5U2-01 19 50372354 50372354 C T AKT1S1 3'UTR 0.55 TCGA-LP-A5U2-01 19 5047638 5047638 T A KDM4B Missense_Mutation p.L195Q 0.36 probably_damaging(0.999) TCGA-LP-A5U2-01 19 50549917 50549917 C T ZNF473 Silent p.F739F 0.31 TCGA-LP-A5U2-01 19 50550144 50550144 C T ZNF473 Missense_Mutation p.S815F 0.21 deleterious(0.04) possibly_damaging(0.788) TCGA-LP-A5U2-01 19 50796879 50796879 G C MYH14 Missense_Mutation p.E1802Q 0.31 tolerated(0.15) probably_damaging(0.999) TCGA-LP-A5U2-01 19 52328001 52328001 A G FPR3 Missense_Mutation p.T334A 0.53 tolerated(0.21) benign(0.009) TCGA-LP-A5U2-01 19 5787352 5787352 C T DUS3L Missense_Mutation p.M411I 0.21 deleterious(0) benign(0.206) TCGA-LP-A5U2-01 19 58287926 58287926 G A ZNF586 Missense_Mutation p.E18K 0.33 deleterious(0) probably_damaging(0.998) TCGA-LP-A5U2-01 19 9071033 9071033 G A MUC16 Silent p.I5471I 0.30 TCGA-LP-A5U2-01 1 110199374 110199374 C G GSTM4 Nonsense_Mutation p.S26* 0.75 TCGA-LP-A5U2-01 1 110655862 110655862 G A UBL4B 3'UTR 0.23 TCGA-LP-A5U2-01 1 120438431 120438431 C G ADAM30 Missense_Mutation p.D177H 0.69 deleterious(0.01) possibly_damaging(0.778) TCGA-LP-A5U2-01 1 13330569 13330569 G A PRAMEF3 Silent p.L239L 0.72 TCGA-LP-A5U2-01 1 155288689 155288689 C G FDPS Missense_Mutation p.F272L 0.14 deleterious(0.02) possibly_damaging(0.689) TCGA-LP-A5U2-01 1 15707266 15707266 G A FHAD1 Missense_Mutation p.E472K 0.80 deleterious(0.01) possibly_damaging(0.521) TCGA-LP-A5U2-01 1 159898128 159898128 G A IGSF9 Missense_Mutation p.P1017L 0.70 deleterious(0.01) benign(0.063) TCGA-LP-A5U2-01 1 19549239 19549239 G A EMC1 Silent p.F822F 0.15 TCGA-LP-A5U2-01 1 202561283 202561283 C G PPP1R12B 3'UTR 0.14 TCGA-LP-A5U2-01 1 213446676 213446676 C T RPS6KC1 3'UTR 0.65 TCGA-LP-A5U2-01 1 247267393 247267393 C G ZNF669 Missense_Mutation p.E37Q 0.15 tolerated_low_confidence(0.27) benign(0) TCGA-LP-A5U2-01 1 24771731 24771731 C T NIPAL3 Silent p.L131L 0.78 TCGA-LP-A5U2-01 1 28282269 28282269 C G SMPDL3B Missense_Mutation p.F255L 0.11 deleterious(0.02) benign(0.248) TCGA-LP-A5U2-01 1 29386958 29386958 G A EPB41 Missense_Mutation p.E657K 0.11 deleterious(0.01) probably_damaging(0.983) TCGA-LP-A5U2-01 1 48688468 48688468 G C SLC5A9 Missense_Mutation p.E20D 0.11 tolerated(0.35) benign(0.002) TCGA-LP-A5U2-01 1 48688507 48688507 G C SLC5A9 Silent p.L33L 0.11 TCGA-LP-A5U2-01 1 48688562 48688562 G C SLC5A9 Missense_Mutation p.G52R 0.11 deleterious(0) probably_damaging(1) TCGA-LP-A5U2-01 1 55624600 55624600 C T USP24 Missense_Mutation p.R393H 0.38 deleterious(0) possibly_damaging(0.657) TCGA-LP-A5U2-01 1 65146977 65146977 G A CACHD1 Missense_Mutation p.R1097K 0.84 tolerated(0.92) benign(0.145) TCGA-LP-A5U2-01 1 76288101 76288101 C G MSH4 Missense_Mutation p.H333D 0.28 tolerated(0.11) benign(0.159) TCGA-LP-A5U2-01 1 7907751 7907751 C G UTS2 3'Flank 0.15 TCGA-LP-A5U2-01 1 87599320 87599320 C G RP5-1052I5.2 Missense_Mutation p.H264D 0.14 tolerated_low_confidence(0.06) benign(0) TCGA-LP-A5U2-01 1 98186371 98186371 G A DPYD Intron 0.20 TCGA-LP-A5U2-01 20 37547326 37547326 G C PPP1R16B 3'UTR 0.45 TCGA-LP-A5U2-01 20 4202235 4202235 C G ADRA1D Missense_Mutation p.E552Q 0.36 deleterious_low_confidence(0.05) possibly_damaging(0.689) TCGA-LP-A5U2-01 20 48553058 48553058 G C RNF114 Missense_Mutation p.E37Q 0.31 tolerated(0.25) benign(0.356) TCGA-LP-A5U2-01 21 34003041 34003041 C G SYNJ1 3'Flank 0.74 TCGA-LP-A5U2-01 21 34951825 34951825 C G DONSON Missense_Mutation p.R465T 0.30 deleterious(0.02) benign(0.098) TCGA-LP-A5U2-01 22 16256545 16256545 C G POTEH 3'UTR 0.07 TCGA-LP-A5U2-01 22 17119509 17119509 G T TPTEP1 RNA 0.53 TCGA-LP-A5U2-01 22 26688956 26688956 G C SEZ6L Missense_Mutation p.D227H 0.25 tolerated(0.11) benign(0.182) TCGA-LP-A5U2-01 22 40745946 40745946 G A ADSL Silent p.V88V 0.29 TCGA-LP-A5U2-01 22 41547874 41547874 C G EP300 Nonsense_Mutation p.S952* 0.25 TCGA-LP-A5U2-01 22 41562602 41562602 G C EP300 Splice_Site p.X1269_splice 0.61 TCGA-LP-A5U2-01 22 50469242 50469242 G C TTLL8 Missense_Mutation p.S623W 0.60 deleterious(0.03) possibly_damaging(0.786) TCGA-LP-A5U2-01 22 50615649 50615649 G C PANX2 Missense_Mutation p.E170Q 0.40 tolerated(0.08) probably_damaging(0.974) TCGA-LP-A5U2-01 2 145156053 145156053 G C ZEB2 Missense_Mutation p.Q901E 0.47 tolerated(0.28) benign(0.444) TCGA-LP-A5U2-01 2 149247627 149247627 G A MBD5 Missense_Mutation p.E1243K 0.32 tolerated_low_confidence(0.14) unknown(0) TCGA-LP-A5U2-01 2 167138232 167138232 C T SCN9A Silent p.Q676Q 0.11 TCGA-LP-A5U2-01 2 172930371 172930371 C T METAP1D Missense_Mutation p.R130W 0.13 deleterious(0) benign(0) TCGA-LP-A5U2-01 2 174988002 174988002 C T OLA1 Missense_Mutation p.E212K 0.30 deleterious(0.01) possibly_damaging(0.861) TCGA-LP-A5U2-01 2 204048102 204048102 G C NBEAL1 Missense_Mutation p.R2203S 0.55 deleterious(0) probably_damaging(0.999) TCGA-LP-A5U2-01 2 218700857 218700857 C G TNS1 Missense_Mutation p.E904Q 0.91 tolerated(0.44) probably_damaging(0.947) TCGA-LP-A5U2-01 2 27430607 27430607 C T SLC5A6 5'UTR 0.42 TCGA-LP-A5U2-01 2 27680517 27680517 C G IFT172 Missense_Mutation p.E1073Q 0.35 tolerated(0.05) benign(0.328) TCGA-LP-A5U2-01 2 43655350 43655350 C T THADA Missense_Mutation p.R1316H 0.32 tolerated(0.06) benign(0.001) TCGA-LP-A5U2-01 2 44053554 44053554 G C ABCG5 Silent p.L247L 0.32 TCGA-LP-A5U2-01 2 85555056 85555056 C T TGOLN2 Silent p.L10L 0.47 TCGA-LP-A5U2-01 2 85555129 85555129 C T TGOLN2 5'UTR 0.44 TCGA-LP-A5U2-01 3 112198418 112198418 G A BTLA Missense_Mutation p.S96L 0.42 tolerated(0.11) probably_damaging(0.999) TCGA-LP-A5U2-01 3 122296511 122296511 G A PARP15 5'UTR 0.44 TCGA-LP-A5U2-01 3 134085180 134085180 C T AMOTL2 Silent p.R377R 0.41 TCGA-LP-A5U2-01 3 137906186 137906186 G C ARMC8 5'UTR 0.35 TCGA-LP-A5U2-01 3 141164491 141164491 C T ZBTB38 Silent p.I1087I 0.41 TCGA-LP-A5U2-01 3 156866059 156866059 G C CCNL1 Missense_Mutation p.R518G 0.41 deleterious(0.05) unknown(0) TCGA-LP-A5U2-01 3 183542976 183542976 G C MAP6D1 Missense_Mutation p.I120M 0.40 tolerated(0.22) possibly_damaging(0.823) TCGA-LP-A5U2-01 3 183966992 183966992 G C ALG3 5'Flank 0.30 TCGA-LP-A5U2-01 3 195511826 195511826 G C MUC4 Missense_Mutation p.L2209V 0.15 unknown(0) TCGA-LP-A5U2-01 3 196449344 196449344 C G PIGX Missense_Mutation p.L79V 0.45 tolerated(0.95) benign(0.075) TCGA-LP-A5U2-01 3 27414503 27414503 C G SLC4A7 3'UTR 0.36 TCGA-LP-A5U2-01 3 3081733 3081733 G A CNTN4 Missense_Mutation p.E726K 0.40 deleterious(0.03) possibly_damaging(0.688) TCGA-LP-A5U2-01 3 44776204 44776204 G C ZNF501 Silent p.L97L 0.35 TCGA-LP-A5U2-01 3 45077054 45077054 C G CLEC3B Missense_Mutation p.L83V 0.49 deleterious(0) probably_damaging(0.993) TCGA-LP-A5U2-01 3 47384226 47384226 C T KLHL18 Missense_Mutation p.S415L 0.46 deleterious(0.01) benign(0.04) TCGA-LP-A5U2-01 3 47953286 47953286 C T MAP4 Intron 0.51 TCGA-LP-A5U2-01 3 49020996 49020996 G C ARIH2 3'UTR 0.39 TCGA-LP-A5U2-01 3 97652615 97652615 G C CRYBG3 Silent p.V825V 0.56 TCGA-LP-A5U2-01 3 9852359 9852359 G A TTLL3 Missense_Mutation p.R148K 0.31 tolerated(0.61) benign(0.013) TCGA-LP-A5U2-01 4 119951944 119951944 G C SYNPO2 Missense_Mutation p.E672Q 0.44 deleterious(0) probably_damaging(1) TCGA-LP-A5U2-01 4 120440276 120440276 C G PDE5A Missense_Mutation p.E642Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-LP-A5U2-01 4 139135743 139135743 C T SLC7A11 Missense_Mutation p.E263K 0.26 tolerated(0.1) possibly_damaging(0.803) TCGA-LP-A5U2-01 4 153691340 153691340 C G TIGD4 Missense_Mutation p.D273H 0.45 deleterious(0) probably_damaging(1) TCGA-LP-A5U2-01 4 153692024 153692024 C T TIGD4 Missense_Mutation p.E45K 0.40 tolerated(1) benign(0.058) TCGA-LP-A5U2-01 4 153692036 153692036 C T TIGD4 Missense_Mutation p.E41K 0.35 deleterious(0.04) possibly_damaging(0.456) TCGA-LP-A5U2-01 4 155244295 155244295 G C DCHS2 Intron 0.35 TCGA-LP-A5U2-01 4 15597793 15597793 C G CC2D2A Nonsense_Mutation p.S1467* 0.21 TCGA-LP-A5U2-01 4 1746446 1746446 G T TACC3 Nonsense_Mutation p.E780* 0.31 TCGA-LP-A5U2-01 4 184368433 184368433 G A CDKN2AIP Silent p.L532L 0.50 TCGA-LP-A5U2-01 4 184368622 184368622 G C CDKN2AIP 3'UTR 0.31 TCGA-LP-A5U2-01 4 3242248 3242248 G A HTT 3'UTR 0.38 TCGA-LP-A5U2-01 4 419737 419737 G C ABCA11P RNA 0.32 TCGA-LP-A5U2-01 4 4322678 4322678 G A ZBTB49 Missense_Mutation p.D645N 0.50 deleterious(0.05) benign(0.063) TCGA-LP-A5U2-01 4 47594211 47594211 C T ATP10D 3'UTR 0.32 TCGA-LP-A5U2-01 4 79308769 79308769 G C FRAS1 Missense_Mutation p.D1297H 0.37 possibly_damaging(0.491) TCGA-LP-A5U2-01 4 82027008 82027008 C G PRKG2 Missense_Mutation p.K674N 0.32 tolerated(0.35) benign(0.006) TCGA-LP-A5U2-01 4 95129564 95129564 G T SMARCAD1 Missense_Mutation p.D7Y 0.29 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-LP-A5U2-01 4 951642 951642 G T TMEM175 Silent p.V291V 0.31 TCGA-LP-A5U2-01 5 118844836 118844836 T C HSD17B4 Missense_Mutation p.V470A 0.23 tolerated(0.11) benign(0.232) TCGA-LP-A5U2-01 5 132203227 132203227 G C UQCRQ Missense_Mutation p.E68Q 0.32 tolerated(0.19) benign(0.235) TCGA-LP-A5U2-01 5 132428464 132428464 G C HSPA4 Missense_Mutation p.E545Q 0.46 tolerated(0.27) possibly_damaging(0.555) TCGA-LP-A5U2-01 5 134246123 134246123 C G PCBD2 Missense_Mutation p.I61M 0.57 deleterious(0.02) possibly_damaging(0.677) TCGA-LP-A5U2-01 5 140476730 140476730 G A PCDHB2 Missense_Mutation p.E786K 0.36 tolerated_low_confidence(0.17) benign(0.021) TCGA-LP-A5U2-01 5 140476919 140476919 G C PCDHB2 3'UTR 0.29 TCGA-LP-A5U2-01 5 140553826 140553826 C T PCDHB7 Silent p.I470I 0.46 TCGA-LP-A5U2-01 5 140788784 140788784 G C PCDHGB6 Missense_Mutation p.D339H 0.35 deleterious(0) probably_damaging(1) TCGA-LP-A5U2-01 5 149380380 149380380 C G TIGD6 5'UTR 0.50 TCGA-LP-A5U2-01 5 154397090 154397090 C G KIF4B Missense_Mutation p.S1224C 0.43 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-LP-A5U2-01 5 160047705 160047705 C T ATP10B Missense_Mutation p.D689N 0.40 tolerated(0.13) benign(0.016) TCGA-LP-A5U2-01 5 175799687 175799687 C G ARL10 3'UTR 0.45 TCGA-LP-A5U2-01 5 178506971 178506971 G A ZNF354C Missense_Mutation p.R513K 0.46 tolerated(0.26) possibly_damaging(0.792) TCGA-LP-A5U2-01 5 179440305 179440305 C G RNF130 Missense_Mutation p.G150A 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-LP-A5U2-01 5 179676112 179676112 C T MAPK9 Silent p.V159V 0.50 TCGA-LP-A5U2-01 5 32354822 32354822 G C ZFR 3'UTR 0.29 TCGA-LP-A5U2-01 5 34929994 34929994 C G DNAJC21 Missense_Mutation p.R24G 0.33 deleterious(0) probably_damaging(0.998) TCGA-LP-A5U2-01 5 41007551 41007551 G C MROH2B Nonsense_Mutation p.S1205* 0.37 TCGA-LP-A5U2-01 5 41018849 41018849 G A MROH2B Silent p.L873L 0.43 TCGA-LP-A5U2-01 5 5182233 5182233 G A ADAMTS16 Missense_Mutation p.R193K 0.44 tolerated(0.34) benign(0.012) TCGA-LP-A5U2-01 5 64925596 64925596 C T CTC-534A2.2 Missense_Mutation p.S61F 0.43 deleterious(0) probably_damaging(0.943) TCGA-LP-A5U2-01 5 89990515 89990515 G A GPR98 Missense_Mutation p.E2648K 0.47 probably_damaging(0.973) TCGA-LP-A5U2-01 6 109005321 109005345 TACGTGTGCGGCTGCTTTTAAGAAC - FOXO3 3'UTR 0.23 TCGA-LP-A5U2-01 6 132030684 132030684 C T CTAGE9 Missense_Mutation p.E492K 0.43 deleterious(0.05) benign(0.085) TCGA-LP-A5U2-01 6 132781956 132781956 G C STX7 Missense_Mutation p.L243V 0.28 tolerated(0.64) benign(0) TCGA-LP-A5U2-01 6 137525576 137525576 G A IFNGR1 Missense_Mutation p.H147Y 0.48 deleterious(0.03) possibly_damaging(0.786) TCGA-LP-A5U2-01 6 151413669 151413669 G C MTHFD1L Missense_Mutation p.E972Q 0.44 tolerated(0.08) probably_damaging(0.988) TCGA-LP-A5U2-01 6 154732090 154732090 C T CNKSR3 Missense_Mutation p.M419I 0.36 tolerated(0.1) benign(0.11) TCGA-LP-A5U2-01 6 16247070 16247070 C T GMPR Intron 0.45 TCGA-LP-A5U2-01 6 17626044 17626044 G C NUP153 Missense_Mutation p.S1299C 0.46 deleterious(0.03) possibly_damaging(0.823) TCGA-LP-A5U2-01 6 27419274 27419274 A G ZNF184 Silent p.H688H 0.38 TCGA-LP-A5U2-01 6 31689503 31689503 G T LY6G6C 5'UTR 0.58 TCGA-LP-A5U2-01 6 33261017 33261017 G C RGL2 Missense_Mutation p.P595A 0.32 tolerated(0.46) benign(0.057) TCGA-LP-A5U2-01 6 34071423 34071423 G T GRM4 Intron 0.38 TCGA-LP-A5U2-01 6 35280419 35280419 G A DEF6 Missense_Mutation p.R226Q 0.33 deleterious(0) benign(0.354) TCGA-LP-A5U2-01 6 43005484 43005484 G A CUL7 Missense_Mutation p.S1764F 0.38 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-LP-A5U2-01 6 43005529 43005529 G C CUL7 Nonsense_Mutation p.S1749* 0.43 TCGA-LP-A5U2-01 7 100414872 100414872 G A EPHB4 Silent p.R510R 0.41 TCGA-LP-A5U2-01 7 100678046 100678046 G A MUC17 Missense_Mutation p.E1117K 0.38 unknown(0) TCGA-LP-A5U2-01 7 100679462 100679462 G C MUC17 Missense_Mutation p.E1589Q 0.32 unknown(0) TCGA-LP-A5U2-01 7 123388955 123388955 G A WASL 5'UTR 0.53 TCGA-LP-A5U2-01 7 129497387 129497387 G A UBE2H Silent p.L88L 0.52 TCGA-LP-A5U2-01 7 141176727 141176727 G C TMEM178B 3'UTR 0.50 TCGA-LP-A5U2-01 7 141760129 141760129 G A MGAM Missense_Mutation p.D1360N 0.46 tolerated(1) benign(0.002) TCGA-LP-A5U2-01 7 29111989 29111989 G C CPVL Silent p.L220L 0.31 TCGA-LP-A5U2-01 7 48312257 48312257 C T ABCA13 Silent p.I998I 0.36 TCGA-LP-A5U2-01 7 55874943 55874943 C T SEPT14 Missense_Mutation p.E276K 0.42 deleterious(0.03) possibly_damaging(0.724) TCGA-LP-A5U2-01 7 86825177 86825177 G A DMTF1 3'UTR 0.53 TCGA-LP-A5U2-01 7 97852434 97852434 G A TECPR1 Silent p.I932I 0.55 TCGA-LP-A5U2-01 7 99725334 99725334 G C MBLAC1 Missense_Mutation p.D106H 0.38 deleterious(0.02) probably_damaging(0.983) TCGA-LP-A5U2-01 7 99956689 99956689 C G PILRB Silent p.L147L 0.32 TCGA-LP-A5U2-01 8 103265787 103265787 G C UBR5 3'UTR 0.57 TCGA-LP-A5U2-01 8 146015306 146015306 G A RPL8 Silent p.I219I 0.41 TCGA-LP-A5U2-01 8 22262421 22262421 C G SLC39A14 Silent p.L66L 0.43 TCGA-LP-A5U2-01 8 28988170 28988170 C T KIF13B Silent p.V985V 0.30 TCGA-LP-A5U2-01 8 51415431 51415431 G C SNTG1 Missense_Mutation p.D153H 0.24 deleterious(0.02) probably_damaging(0.94) TCGA-LP-A5U2-01 8 61707669 61707669 G A CHD7 Missense_Mutation p.E741K 0.22 benign(0.078) TCGA-LP-A5U2-01 8 61750246 61750246 G C CHD7 Missense_Mutation p.R1402T 0.20 probably_damaging(0.996) TCGA-LP-A5U2-01 8 61750713 61750713 G A CHD7 Missense_Mutation p.E1478K 0.47 probably_damaging(0.986) TCGA-LP-A5U2-01 8 68421816 68421816 G A CPA6 Missense_Mutation p.S157L 0.45 deleterious(0) benign(0.297) TCGA-LP-A5U2-01 8 86573432 86573432 C T REXO1L1P 3'UTR 0.05 TCGA-LP-A5U2-01 8 95186037 95186037 G C CDH17 Missense_Mutation p.I257M 0.44 tolerated(0.42) benign(0.062) TCGA-LP-A5U2-01 9 111701683 111701683 G C FAM206A Missense_Mutation p.L119F 0.50 deleterious(0) probably_damaging(0.999) TCGA-LP-A5U2-01 9 114415622 114415622 G A DNAJC25 3'UTR 0.47 TCGA-LP-A5U2-01 9 114985129 114985129 G A PTBP3 3'UTR 0.18 TCGA-LP-A5U2-01 9 123367419 123367419 C G MEGF9 3'UTR 0.35 TCGA-LP-A5U2-01 9 131939150 131939150 G A IER5L Silent p.L394L 0.33 TCGA-LP-A5U2-01 9 134134488 134134488 G C FAM78A 3'UTR 0.49 TCGA-LP-A5U2-01 9 134134543 134134543 G C FAM78A 3'UTR 0.51 TCGA-LP-A5U2-01 9 139008588 139008588 G A C9orf69 Silent p.F53F 0.51 TCGA-LP-A5U2-01 9 139008612 139008612 G C C9orf69 Missense_Mutation p.I45M 0.48 tolerated(0.29) benign(0.022) TCGA-LP-A5U2-01 9 140082187 140082187 G C ANAPC2 Missense_Mutation p.F162L 0.55 tolerated(0.75) benign(0.017) TCGA-LP-A5U2-01 9 2115948 2115948 G C SMARCA2 Missense_Mutation p.D1195H 0.32 possibly_damaging(0.861) TCGA-LP-A5U2-01 9 2123896 2123896 G A SMARCA2 Missense_Mutation p.V1314M 0.12 possibly_damaging(0.623) TCGA-LP-A5U2-01 9 36170051 36170051 C G CCIN Silent p.L184L 0.61 TCGA-LP-A5U2-01 9 36246250 36246250 G A GNE Missense_Mutation p.H163Y 0.54 deleterious(0) probably_damaging(0.997) TCGA-LP-A5U2-01 9 5339677 5339677 C T RLN1 Missense_Mutation p.A24T 0.07 tolerated(0.48) benign(0.151) TCGA-LP-A5U2-01 X 101816848 101816848 C T NXF4 RNA 0.55 TCGA-LP-A5U2-01 X 103349718 103349718 G C SLC25A53 Missense_Mutation p.Q75E 0.42 tolerated(0.36) benign(0.021) TCGA-LP-A5U2-01 X 107320570 107320570 G C VSIG1 Missense_Mutation p.E411Q 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-LP-A5U2-01 X 109419355 109419355 T C TMEM164 3'UTR 0.31 TCGA-LP-A5U2-01 X 109764850 109764850 G A TDGF1P3 RNA 0.42 TCGA-LP-A5U2-01 X 117748713 117748713 C T DOCK11 Missense_Mutation p.S1052F 0.32 deleterious(0) possibly_damaging(0.656) TCGA-LP-A5U2-01 X 118242373 118242373 C G KIAA1210 Missense_Mutation p.G280A 0.40 tolerated(0.12) possibly_damaging(0.543) TCGA-LP-A5U2-01 X 134856839 134856839 C G CT45A1 3'UTR 0.03 TCGA-LP-A5U2-01 X 135574218 135574218 C G BRS3 Nonsense_Mutation p.S295* 0.42 TCGA-LP-A5U2-01 X 153880294 153880294 G A CTAG2 3'UTR 0.48 TCGA-LP-A5U2-01 X 27766674 27766674 G A DCAF8L2 Silent p.K554K 0.42 TCGA-LP-A5U2-01 X 31139645 31139645 C T DMD 3'UTR 0.37 TCGA-LP-A5U2-01 X 43698137 43698137 C T MAOB Missense_Mutation p.E86K 0.40 tolerated(0.19) benign(0.207) TCGA-LP-A5U2-01 X 63408160 63408160 T G AMER1 3'UTR 0.18 TCGA-LP-A5U2-01 X 72674416 72674416 G A CDX4 Missense_Mutation p.E284K 0.30 deleterious(0.01) probably_damaging(0.972) TCGA-LP-A5U2-01 X 73064409 73064409 G C XIST RNA 0.39 TCGA-LP-A5U2-01 X 77254035 77254035 C T ATP7A Missense_Mutation p.S466L 0.21 tolerated(0.17) benign(0.001) TCGA-LP-A5U3-01 10 24835047 24835047 C T KIAA1217 Missense_Mutation p.L1876F 0.39 deleterious(0) probably_damaging(0.956) TCGA-LP-A5U3-01 11 2188715 2188715 G A TH Silent p.H246H 0.75 TCGA-LP-A5U3-01 11 77090969 77090969 G A PAK1 Silent p.V87V 0.22 TCGA-LP-A5U3-01 12 118520134 118520134 G A VSIG10 Silent p.N154N 0.37 TCGA-LP-A5U3-01 12 129189963 129189963 T C TMEM132C Missense_Mutation p.I817T 0.38 tolerated(0.13) benign(0.005) TCGA-LP-A5U3-01 12 521075 521075 T G CCDC77 Silent p.A67A 0.30 TCGA-LP-A5U3-01 12 57828620 57828620 G C INHBC 5'UTR 0.50 TCGA-LP-A5U3-01 12 57994145 57994145 C T PIP4K2C Silent p.L246L 0.40 TCGA-LP-A5U3-01 13 70275500 70275500 C T KLHL1 3'UTR 0.55 TCGA-LP-A5U3-01 14 60976393 60976393 G C SIX6 Missense_Mutation p.E93Q 0.21 tolerated(0.07) benign(0.26) TCGA-LP-A5U3-01 14 74363160 74363160 C T ZNF410 Missense_Mutation p.S121L 0.30 deleterious_low_confidence(0.01) benign(0.021) TCGA-LP-A5U3-01 14 74363169 74363169 C G ZNF410 Missense_Mutation p.S124C 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.599) TCGA-LP-A5U3-01 14 76621155 76621155 C T GPATCH2L Missense_Mutation p.S150L 0.25 deleterious(0.01) probably_damaging(0.958) TCGA-LP-A5U3-01 14 92474016 92474016 C T TRIP11 Missense_Mutation p.E499K 0.28 deleterious(0.01) possibly_damaging(0.79) TCGA-LP-A5U3-01 15 41961606 41961606 C T MGA Nonsense_Mutation p.Q172* 0.59 TCGA-LP-A5U3-01 15 62256067 62256067 C T VPS13C Missense_Mutation p.E1100K 0.38 tolerated(0.13) benign(0.422) TCGA-LP-A5U3-01 15 65903420 65903420 C T VWA9 Intron 0.42 TCGA-LP-A5U3-01 16 12093183 12093183 C T SNX29 Silent p.L13L 0.47 TCGA-LP-A5U3-01 16 31434714 31434714 C T ITGAD Silent p.N967N 0.32 TCGA-LP-A5U3-01 16 5075473 5075473 G C NAGPA 3'UTR 0.37 TCGA-LP-A5U3-01 16 73127411 73127411 C T HCCAT5 RNA 0.18 TCGA-LP-A5U3-01 16 86612401 86612401 G A FOXL1 Silent p.E24E 0.59 TCGA-LP-A5U3-01 17 21911182 21911182 G A RP11-744K17.9 RNA 0.46 TCGA-LP-A5U3-01 17 57685473 57685473 G A DHX40 3'UTR 0.34 TCGA-LP-A5U3-01 17 73728256 73728256 C T ITGB4 Missense_Mutation p.R464W 0.30 deleterious(0.01) possibly_damaging(0.582) TCGA-LP-A5U3-01 18 64239258 64239258 G A CDH19 Missense_Mutation p.H62Y 0.52 tolerated(1) benign(0.175) TCGA-LP-A5U3-01 19 42595605 42595605 A T POU2F2 3'UTR 0.23 TCGA-LP-A5U3-01 19 45974502 45974502 A C FOSB Missense_Mutation p.K166N 0.40 deleterious(0) possibly_damaging(0.728) TCGA-LP-A5U3-01 19 49102448 49102448 C T SULT2B1 Missense_Mutation p.R295C 0.30 deleterious(0.03) benign(0.167) TCGA-LP-A5U3-01 19 57328826 57328826 C T PEG3 Silent p.S328S 0.27 TCGA-LP-A5U3-01 1 110128858 110128858 A G GNAI3 Missense_Mutation p.Q204R 0.37 deleterious(0) probably_damaging(0.999) TCGA-LP-A5U3-01 1 153004864 153004864 C T SPRR1B Nonsense_Mutation p.Q15* 0.63 TCGA-LP-A5U3-01 1 17914042 17914042 A G ARHGEF10L Missense_Mutation p.D42G 0.46 deleterious_low_confidence(0.01) benign(0.126) TCGA-LP-A5U3-01 1 27608762 27608762 G A WDTC1 Nonsense_Mutation p.W55* 0.30 TCGA-LP-A5U3-01 1 32669616 32669616 G T CCDC28B Missense_Mutation p.D101Y 0.38 deleterious(0) probably_damaging(0.993) TCGA-LP-A5U3-01 2 107032375 107032375 A T RGPD3 Missense_Mutation p.S1665R 0.48 deleterious_low_confidence(0) benign(0.005) TCGA-LP-A5U3-01 2 224824575 224824575 C T MRPL44 Silent p.H168H 0.67 TCGA-LP-A5U3-01 3 195511098 195511098 G A MUC4 Silent p.V2451V 0.07 TCGA-LP-A5U3-01 3 195512836 195512836 G C MUC4 Missense_Mutation p.S1872C 0.08 unknown(0) TCGA-LP-A5U3-01 3 38315826 38315826 C G SLC22A13 Missense_Mutation p.L148V 0.38 deleterious(0.04) possibly_damaging(0.85) TCGA-LP-A5U3-01 3 65365084 65365084 G C MAGI1 Missense_Mutation p.S949R 0.40 tolerated(0.24) probably_damaging(0.91) TCGA-LP-A5U3-01 4 113541344 113541344 C T C4orf21 Silent p.V55V 0.32 TCGA-LP-A5U3-01 4 156632318 156632318 C T GUCY1A3 Missense_Mutation p.T334M 0.27 deleterious(0) probably_damaging(0.956) TCGA-LP-A5U3-01 4 727716 727716 G A PCGF3 Intron 0.35 TCGA-LP-A5U3-01 4 8608555 8608555 A G CPZ Missense_Mutation p.Y333C 0.36 deleterious(0) probably_damaging(0.998) TCGA-LP-A5U3-01 5 133944129 133944129 C T SAR1B Missense_Mutation p.R138K 0.31 tolerated(0.72) benign(0.004) TCGA-LP-A5U3-01 6 152711581 152711581 G A SYNE1 Missense_Mutation p.L2671F 0.41 possibly_damaging(0.659) TCGA-LP-A5U3-01 6 161771025 161771025 C T PARK2 3'UTR 0.13 TCGA-LP-A5U3-01 6 44197647 44197647 C T SLC29A1 Silent p.I106I 0.33 TCGA-LP-A5U3-01 7 138417639 138417639 G T ATP6V0A4 Missense_Mutation p.P631T 0.27 tolerated(0.42) probably_damaging(0.986) TCGA-LP-A5U3-01 7 148484186 148484186 G A CUL1 Missense_Mutation p.E485K 0.32 deleterious(0) probably_damaging(0.991) TCGA-LP-A5U3-01 7 154862923 154862923 G A HTR5A-AS1 Missense_Mutation p.R31C 0.43 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-LP-A5U3-01 8 125499264 125499264 C G RNF139 Missense_Mutation p.D458E 0.21 deleterious(0) probably_damaging(1) TCGA-LP-A5U3-01 9 123287355 123287355 A G CDK5RAP2 Missense_Mutation p.V334A 0.53 tolerated(0.23) benign(0.153) TCGA-LP-A5U3-01 X 101910193 101910193 C T GPRASP1 Missense_Mutation p.A451V 0.18 deleterious(0.03) benign(0.103) TCGA-LP-A5U3-01 X 138633230 138633230 C T F9 Missense_Mutation p.P177L 0.40 deleterious(0) probably_damaging(1) TCGA-LP-A5U3-01 X 17744069 17744069 G A NHS Missense_Mutation p.V594I 0.25 tolerated(0.06) probably_damaging(0.997) TCGA-LP-A5U3-01 X 31089910 31089910 C T FTHL17 Missense_Mutation p.R54H 0.31 tolerated(0.22) benign(0.011) TCGA-LP-A5U3-01 X 47500685 47500685 C T ELK1 Silent p.K52K 0.28 TCGA-LP-A5U3-01 X 53106806 53106806 G A GPR173 Missense_Mutation p.V335I 0.40 tolerated(0.22) benign(0.129) TCGA-LP-A5U3-01 X 78217347 78217347 A T P2RY10 3'UTR 0.37 TCGA-LP-A7HU-01 10 104163067 104163067 G C PSD Missense_Mutation p.P989A 0.26 tolerated(0.07) benign(0) TCGA-LP-A7HU-01 10 104182625 104182625 G A FBXL15 Missense_Mutation p.E260K 0.38 deleterious(0) benign(0.091) TCGA-LP-A7HU-01 10 105154004 105154004 C G USMG5 5'UTR 0.17 TCGA-LP-A7HU-01 10 105154054 105154054 C T USMG5 5'UTR 0.24 TCGA-LP-A7HU-01 10 105920872 105920872 C T WDR96 Missense_Mutation p.E1155K 0.23 deleterious(0) probably_damaging(0.987) TCGA-LP-A7HU-01 10 120488876 120488876 C G CACUL1 Silent p.S176S 0.35 TCGA-LP-A7HU-01 10 124089058 124089058 C T BTBD16 Silent p.L325L 0.16 TCGA-LP-A7HU-01 10 127786985 127786985 C T ADAM12 Missense_Mutation p.M335I 0.20 deleterious(0.01) possibly_damaging(0.869) TCGA-LP-A7HU-01 10 43691251 43691251 G A RASGEF1A 3'Flank 0.30 TCGA-LP-A7HU-01 10 5790767 5790767 G C FAM208B Missense_Mutation p.E1795Q 0.17 tolerated(0.15) benign(0.03) TCGA-LP-A7HU-01 10 5791144 5791144 G C FAM208B Silent p.G1920G 0.11 TCGA-LP-A7HU-01 10 5791198 5791198 G C FAM208B Missense_Mutation p.M1938I 0.16 deleterious(0.01) benign(0.001) TCGA-LP-A7HU-01 10 5791687 5791687 G C FAM208B Silent p.V2101V 0.14 TCGA-LP-A7HU-01 10 64565423 64565423 G A ADO Missense_Mutation p.A202T 0.12 tolerated(0.25) benign(0.431) TCGA-LP-A7HU-01 10 75399732 75399732 G A MYOZ1 Missense_Mutation p.S15F 0.19 deleterious(0.03) possibly_damaging(0.612) TCGA-LP-A7HU-01 10 79553837 79553837 G A DLG5 Missense_Mutation p.T1862I 0.16 deleterious(0) probably_damaging(0.999) TCGA-LP-A7HU-01 10 81317074 81317074 C T SFTPA2 Missense_Mutation p.R213Q 0.11 tolerated(0.75) benign(0.001) TCGA-LP-A7HU-01 10 95849061 95849061 C G PLCE1 Intron 0.12 TCGA-LP-A7HU-01 10 99343554 99343554 C T ANKRD2 3'UTR 0.25 TCGA-LP-A7HU-01 11 118393502 118393502 C G KMT2A 3'UTR 0.19 TCGA-LP-A7HU-01 11 14535160 14535160 G C PSMA1 Nonsense_Mutation p.S173* 0.28 TCGA-LP-A7HU-01 11 47188066 47188066 G A ARFGAP2 Missense_Mutation p.H473Y 0.33 tolerated(0.06) benign(0.048) TCGA-LP-A7HU-01 11 47758253 47758253 G A FNBP4 Missense_Mutation p.S499L 0.38 deleterious(0.03) possibly_damaging(0.741) TCGA-LP-A7HU-01 11 5809374 5809374 G A OR52N1 Nonsense_Mutation p.Q225* 0.32 TCGA-LP-A7HU-01 11 61026536 61026536 C T VWCE Missense_Mutation p.A827T 0.30 tolerated_low_confidence(0.71) benign(0.001) TCGA-LP-A7HU-01 11 62933611 62933611 G A SLC22A25 Missense_Mutation p.P397L 0.23 tolerated(1) benign(0.002) TCGA-LP-A7HU-01 11 63986736 63986736 G A FERMT3 Missense_Mutation p.R267Q 0.22 deleterious(0) probably_damaging(0.982) TCGA-LP-A7HU-01 11 73008917 73008917 G A P2RY6 3'UTR 0.27 TCGA-LP-A7HU-01 11 77850611 77850611 C T ALG8 Silent p.T8T 0.41 TCGA-LP-A7HU-01 11 88911318 88911318 G A TYR Missense_Mutation p.G66E 0.32 deleterious(0) probably_damaging(1) TCGA-LP-A7HU-01 12 124111692 124111692 A T EIF2B1 Silent p.T127T 0.25 TCGA-LP-A7HU-01 12 125591715 125591715 G A AACS Silent p.P272P 0.18 TCGA-LP-A7HU-01 12 132211567 132211567 G A SFSWAP Silent p.K305K 0.13 TCGA-LP-A7HU-01 12 15262451 15262451 C T RERG Missense_Mutation p.E65K 0.10 deleterious(0.01) benign(0.147) TCGA-LP-A7HU-01 12 1702314 1702314 G A FBXL14 Missense_Mutation p.L307F 0.31 deleterious(0) probably_damaging(1) TCGA-LP-A7HU-01 12 31882028 31882028 G A AMN1 5'UTR 0.16 TCGA-LP-A7HU-01 12 52309927 52309927 C T ACVRL1 Missense_Mutation p.R386C 0.22 deleterious(0) probably_damaging(0.984) TCGA-LP-A7HU-01 12 53509917 53509917 G A SOAT2 Missense_Mutation p.E249K 0.16 deleterious(0) probably_damaging(0.999) TCGA-LP-A7HU-01 12 70748662 70748662 C G CNOT2 3'UTR 0.05 TCGA-LP-A7HU-01 12 9013793 9013793 C T A2ML1 Silent p.L1134L 0.14 TCGA-LP-A7HU-01 13 107821103 107821103 G A FAM155A 3'UTR 0.23 TCGA-LP-A7HU-01 13 113479774 113479774 C T ATP11A Silent p.L301L 0.21 TCGA-LP-A7HU-01 13 26145785 26145785 C T ATP8A2 Silent p.G539G 0.23 TCGA-LP-A7HU-01 13 32785169 32785169 C T FRY Missense_Mutation p.S1530L 0.14 deleterious(0.01) possibly_damaging(0.686) TCGA-LP-A7HU-01 13 45965226 45965226 C G SLC25A30 3'Flank 0.23 TCGA-LP-A7HU-01 13 60686168 60686168 G A DIAPH3 Silent p.L122L 0.23 TCGA-LP-A7HU-01 13 96241408 96241408 G - DZIP1 Frame_Shift_Del p.T676Rfs*42 0.13 TCGA-LP-A7HU-01 14 101013033 101013033 G A BEGAIN Intron 0.23 TCGA-LP-A7HU-01 14 104027364 104027365 - AG BAG5 Frame_Shift_Ins p.T88* 0.17 TCGA-LP-A7HU-01 14 24769294 24769311 GGCGCTCGGAGCCGGCTC - NOP9 In_Frame_Del p.G45_P51delinsA 0.21 TCGA-LP-A7HU-01 14 39650617 39650617 T G PNN Missense_Mutation p.N568K 0.20 deleterious_low_confidence(0.05) unknown(0) TCGA-LP-A7HU-01 14 93760682 93760682 T C BTBD7 Silent p.G228G 0.17 TCGA-LP-A7HU-01 14 95590580 95590580 G A DICER1 Silent p.C443C 0.26 TCGA-LP-A7HU-01 14 96010554 96010554 G C GLRX5 3'UTR 0.30 TCGA-LP-A7HU-01 15 22368878 22368878 C G OR4M2 Silent p.L101L 0.13 TCGA-LP-A7HU-01 15 26107970 26107970 C T ATP10A Missense_Mutation p.V92I 0.28 tolerated(0.08) benign(0.222) TCGA-LP-A7HU-01 15 32460293 32460293 C T CHRNA7 Silent p.N410N 0.16 TCGA-LP-A7HU-01 15 42192914 42192914 C T EHD4 Missense_Mutation p.E519K 0.20 tolerated(0.14) possibly_damaging(0.636) TCGA-LP-A7HU-01 15 42442920 42442920 C T PLA2G4F Silent p.L219L 0.23 TCGA-LP-A7HU-01 15 42678418 42678418 C T CAPN3 Missense_Mutation p.L145F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-LP-A7HU-01 15 51857317 51857317 G A DMXL2 Missense_Mutation p.S111F 0.17 deleterious(0) possibly_damaging(0.674) TCGA-LP-A7HU-01 15 52252223 52252223 G C LEO1 Missense_Mutation p.Q345E 0.17 tolerated(0.86) benign(0.004) TCGA-LP-A7HU-01 15 52510713 52510713 C T MYO5C Intron 0.16 TCGA-LP-A7HU-01 15 57998186 57998186 C T GCOM1 Intron 0.22 TCGA-LP-A7HU-01 15 75503169 75503183 GGCTCAGAAGTCACC - C15orf39 In_Frame_Del p.Q954_A958del 0.21 TCGA-LP-A7HU-01 15 94858857 94858857 G A MCTP2 Missense_Mutation p.D210N 0.21 deleterious(0.03) probably_damaging(0.927) TCGA-LP-A7HU-01 16 14334201 14334201 G C MKL2 Missense_Mutation p.Q313H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-LP-A7HU-01 16 23583363 23583363 C T UBFD1 3'UTR 0.22 TCGA-LP-A7HU-01 16 2757661 2757661 C G KCTD5 3'UTR 0.27 TCGA-LP-A7HU-01 16 56670196 56670196 G C MT1M 3'Flank 0.31 TCGA-LP-A7HU-01 16 72984827 72984827 G A ZFHX3 Silent p.G919G 0.17 TCGA-LP-A7HU-01 16 75238138 75238138 C T CTRB2 Missense_Mutation p.C238Y 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-LP-A7HU-01 16 88688607 88688607 G A ZC3H18 Missense_Mutation p.R493H 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-LP-A7HU-01 17 15964768 15964768 G A NCOR1 Missense_Mutation p.S1943L 0.14 probably_damaging(0.99) TCGA-LP-A7HU-01 17 16455563 16455563 C A ZNF287 Missense_Mutation p.Q631H 0.09 tolerated(0.35) probably_damaging(0.988) TCGA-LP-A7HU-01 17 16701609 16701609 G A CCDC144A 3'UTR 0.04 TCGA-LP-A7HU-01 17 26672020 26672020 A G TNFAIP1 3'UTR 0.15 TCGA-LP-A7HU-01 17 26820598 26820598 G A SLC13A2 Silent p.K345K 0.16 TCGA-LP-A7HU-01 17 26962131 26962131 G A KIAA0100 Missense_Mutation p.S825L 0.22 tolerated(0.1) benign(0.004) TCGA-LP-A7HU-01 17 29161432 29161432 G A ATAD5 Silent p.K111K 0.17 TCGA-LP-A7HU-01 17 29162264 29162264 G A ATAD5 Missense_Mutation p.E389K 0.11 deleterious(0.01) benign(0.36) TCGA-LP-A7HU-01 17 29162536 29162536 G C ATAD5 Missense_Mutation p.K479N 0.17 tolerated(0.13) benign(0.009) TCGA-LP-A7HU-01 17 30661853 30661853 C G C17orf75 Missense_Mutation p.L225F 0.31 deleterious(0) probably_damaging(0.992) TCGA-LP-A7HU-01 17 35298151 35298151 G A LHX1 Silent p.A214A 0.21 TCGA-LP-A7HU-01 17 39241232 39241232 G C KRTAP4-7 3'UTR 0.16 TCGA-LP-A7HU-01 17 39635214 39635214 G A KRT35 Missense_Mutation p.R249C 0.20 deleterious(0) probably_damaging(0.946) TCGA-LP-A7HU-01 17 46233793 46233793 C T SKAP1 Intron 0.29 TCGA-LP-A7HU-01 17 5084241 5084241 G C ZNF594 3'UTR 0.15 TCGA-LP-A7HU-01 17 55123418 55123418 G A RNF126P1 RNA 0.24 TCGA-LP-A7HU-01 17 56327979 56327979 C T LPO Silent p.I259I 0.13 TCGA-LP-A7HU-01 17 57937752 57937752 G T TUBD1 Silent p.I431I 0.18 TCGA-LP-A7HU-01 17 60755999 60755999 G T MRC2 Missense_Mutation p.K729N 0.17 tolerated(0.12) possibly_damaging(0.635) TCGA-LP-A7HU-01 17 72691888 72691888 C T CD300LF Silent p.Q231Q 0.29 TCGA-LP-A7HU-01 17 73144629 73144629 G A HN1 Missense_Mutation p.S65L 0.14 deleterious(0.01) possibly_damaging(0.795) TCGA-LP-A7HU-01 17 73144753 73144753 G T HN1 Missense_Mutation p.P24T 0.18 deleterious(0) probably_damaging(0.998) TCGA-LP-A7HU-01 17 73975168 73975168 T G ACOX1 5'UTR 0.10 TCGA-LP-A7HU-01 17 8222400 8222400 A G ARHGEF15 Silent p.G703G 0.17 TCGA-LP-A7HU-01 17 9448547 9448547 G A STX8 Nonsense_Mutation p.R89* 0.22 TCGA-LP-A7HU-01 18 3874746 3874746 C T DLGAP1 Intron 0.22 TCGA-LP-A7HU-01 18 47809337 47809337 C G CXXC1 Missense_Mutation p.D575H 0.26 deleterious(0.04) probably_damaging(0.971) TCGA-LP-A7HU-01 18 47810186 47810186 C G CXXC1 Splice_Site p.X476_splice 0.20 TCGA-LP-A7HU-01 19 11475044 11475044 G A DKFZP761J1410 Missense_Mutation p.R321H 0.17 deleterious(0.02) possibly_damaging(0.476) TCGA-LP-A7HU-01 19 12246351 12246351 A G ZNF20 Missense_Mutation p.I55T 0.29 tolerated(0.15) benign(0.021) TCGA-LP-A7HU-01 19 12924382 12924382 G A RNASEH2A 3'UTR 0.15 TCGA-LP-A7HU-01 19 22157310 22157310 T C ZNF208 Missense_Mutation p.K176E 0.17 tolerated(0.62) benign(0.04) TCGA-LP-A7HU-01 19 35448797 35448797 G A ZNF792 3'UTR 0.16 TCGA-LP-A7HU-01 19 35644979 35644979 C G FXYD7 3'UTR 0.34 TCGA-LP-A7HU-01 19 3595534 3595534 C T TBXA2R Intron 0.37 TCGA-LP-A7HU-01 19 36110587 36110587 C T HAUS5 Missense_Mutation p.R445C 0.18 deleterious(0.03) possibly_damaging(0.857) TCGA-LP-A7HU-01 19 36398351 36398351 C T TYROBP Missense_Mutation p.E76K 0.15 tolerated(0.41) benign(0.127) TCGA-LP-A7HU-01 19 3976538 3976538 G C EEF2 3'UTR 0.10 TCGA-LP-A7HU-01 19 39879479 39879479 C T PAF1 Silent p.V221V 0.32 TCGA-LP-A7HU-01 19 41397180 41397180 C T CYP2G1P RNA 0.14 TCGA-LP-A7HU-01 19 43430840 43430840 G C PSG7 Missense_Mutation p.I246M 0.13 tolerated(0.22) possibly_damaging(0.789) TCGA-LP-A7HU-01 19 51957937 51957937 C T SIGLEC8 Splice_Site p.X383_splice 0.14 TCGA-LP-A7HU-01 19 52825335 52825335 C T ZNF480 Nonsense_Mutation p.Q278* 0.45 TCGA-LP-A7HU-01 19 58920468 58920468 C T ZNF584 5'UTR 0.17 TCGA-LP-A7HU-01 19 8151189 8151189 G C FBN3 Missense_Mutation p.Q2259E 0.30 tolerated(0.11) benign(0.129) TCGA-LP-A7HU-01 1 114216044 114216044 G A MAGI3 Missense_Mutation p.R1049H 0.17 deleterious(0) probably_damaging(1) TCGA-LP-A7HU-01 1 15545935 15545935 G C TMEM51 Missense_Mutation p.R153T 0.29 deleterious(0.01) possibly_damaging(0.742) TCGA-LP-A7HU-01 1 16907331 16907331 G A NBPF1 Silent p.I500I 0.04 TCGA-LP-A7HU-01 1 16913636 16913636 G A NBPF1 Silent p.I229I 0.06 TCGA-LP-A7HU-01 1 169677817 169677817 C T SELL Silent p.A84A 0.14 TCGA-LP-A7HU-01 1 18023599 18023599 C T ARHGEF10L Silent p.L1188L 0.23 TCGA-LP-A7HU-01 1 180913457 180913457 G A KIAA1614 Intron 0.17 TCGA-LP-A7HU-01 1 180942781 180942781 C T STX6 3'UTR 0.31 TCGA-LP-A7HU-01 1 183077436 183077436 G C LAMC1 Missense_Mutation p.R250T 0.58 tolerated(0.15) probably_damaging(0.932) TCGA-LP-A7HU-01 1 1961582 1961582 C A GABRD Missense_Mutation p.A407D 0.22 tolerated(0.6) benign(0.079) TCGA-LP-A7HU-01 1 223286248 223286248 G C TLR5 Silent p.P42P 0.17 TCGA-LP-A7HU-01 1 227071430 227071430 G A PSEN2 Missense_Mutation p.G56S 0.21 tolerated(0.47) benign(0.03) TCGA-LP-A7HU-01 1 24454745 24454745 A G IL22RA1 Missense_Mutation p.Y186H 0.18 tolerated(0.17) benign(0.162) TCGA-LP-A7HU-01 1 27721537 27721538 - CC GPR3 3'UTR 0.13 TCGA-LP-A7HU-01 1 29641984 29641984 C G PTPRU Missense_Mutation p.L1120V 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-LP-A7HU-01 1 33547748 33547748 G A ADC Intron 0.13 TCGA-LP-A7HU-01 1 33832940 33832940 G A PHC2 Silent p.A251A 0.15 TCGA-LP-A7HU-01 1 3638726 3638726 G A TP73 Missense_Mutation p.V191M 0.51 deleterious(0) probably_damaging(0.982) TCGA-LP-A7HU-01 1 40092744 40092744 C T HEYL Missense_Mutation p.R141H 0.51 tolerated(0.25) benign(0.016) TCGA-LP-A7HU-01 1 47080684 47080684 C T MOB3C Missense_Mutation p.R22K 0.17 deleterious_low_confidence(0) benign(0.14) TCGA-LP-A7HU-01 20 21328885 21328885 G A XRN2 Silent p.T589T 0.16 TCGA-LP-A7HU-01 20 3340183 3340183 G C C20orf194 Missense_Mutation p.L224V 0.11 tolerated(0.08) benign(0.163) TCGA-LP-A7HU-01 20 34055251 34055251 G T CEP250 Missense_Mutation p.R241L 0.30 benign(0.148) TCGA-LP-A7HU-01 20 34538187 34538187 G C PHF20 3'UTR 0.33 TCGA-LP-A7HU-01 20 34538221 34538221 G A PHF20 3'UTR 0.29 TCGA-LP-A7HU-01 20 34806815 34806815 C T EPB41L1 Silent p.S762S 0.25 TCGA-LP-A7HU-01 20 37551453 37551453 A T PPP1R16B 3'UTR 0.15 TCGA-LP-A7HU-01 20 44099101 44099101 C T WFDC2 Missense_Mutation p.S51L 0.44 tolerated(0.08) benign(0.178) TCGA-LP-A7HU-01 20 44536510 44536510 G A PLTP Silent p.T173T 0.19 TCGA-LP-A7HU-01 20 44596160 44596160 C T ZNF335 Missense_Mutation p.D310N 0.28 deleterious(0) probably_damaging(0.999) TCGA-LP-A7HU-01 20 47905686 47905686 T C ZFAS1 RNA 0.09 TCGA-LP-A7HU-01 20 61826872 61826872 G A YTHDF1 3'UTR 0.24 TCGA-LP-A7HU-01 20 9518357 9518357 T G PAK7 3'UTR 0.24 TCGA-LP-A7HU-01 21 33032016 33032016 C G SOD1 5'UTR 0.21 TCGA-LP-A7HU-01 21 39086695 39086695 C A KCNJ6 Missense_Mutation p.L255F 0.32 deleterious(0) probably_damaging(1) TCGA-LP-A7HU-01 21 43504341 43504341 C A UMODL1 Missense_Mutation p.A156D 0.26 tolerated(0.53) possibly_damaging(0.503) TCGA-LP-A7HU-01 22 21340127 21340127 C T LZTR1 Intron 0.32 TCGA-LP-A7HU-01 22 25115784 25115784 C T PIWIL3 Silent p.T821T 0.28 TCGA-LP-A7HU-01 22 28144367 28144367 T C MN1 3'UTR 0.32 TCGA-LP-A7HU-01 22 33256605 33256605 C T TIMP3 3'UTR 0.23 TCGA-LP-A7HU-01 22 38504320 38504320 G A BAIAP2L2 Silent p.F52F 0.28 TCGA-LP-A7HU-01 22 39101980 39101980 G A GTPBP1 Missense_Mutation p.R7H 0.41 deleterious_low_confidence(0.01) benign(0.099) TCGA-LP-A7HU-01 2 10560198 10560198 C T HPCAL1 Silent p.F105F 0.12 TCGA-LP-A7HU-01 2 109067510 109067510 C T GCC2 Silent p.L30L 0.28 TCGA-LP-A7HU-01 2 120980594 120980594 G A TMEM185B 5'UTR 0.28 TCGA-LP-A7HU-01 2 155102390 155102390 C T GALNT13 Missense_Mutation p.S251L 0.35 deleterious(0.04) possibly_damaging(0.845) TCGA-LP-A7HU-01 2 175338010 175338010 G A GPR155 Silent p.N181N 0.50 TCGA-LP-A7HU-01 2 179410126 179410126 C T TTN Missense_Mutation p.R31904K 0.11 TCGA-LP-A7HU-01 2 179440107 179440107 G A TTN Silent p.T23584T 0.14 TCGA-LP-A7HU-01 2 197784868 197784868 C G PGAP1 Missense_Mutation p.E52Q 0.22 tolerated(0.39) benign(0.001) TCGA-LP-A7HU-01 2 21228795 21228795 C T APOB Missense_Mutation p.E3649K 0.13 benign(0.009) TCGA-LP-A7HU-01 2 230902230 230902230 T C SLC16A14 Missense_Mutation p.T467A 0.35 deleterious(0) possibly_damaging(0.78) TCGA-LP-A7HU-01 2 231380185 231380185 A G SP100 Intron 0.26 TCGA-LP-A7HU-01 2 234203406 234203406 G A ATG16L1 3'UTR 0.39 TCGA-LP-A7HU-01 2 25387630 25387630 C T POMC Silent p.S4S 0.22 TCGA-LP-A7HU-01 2 27281371 27281371 G A AGBL5 Nonsense_Mutation p.W592* 0.29 TCGA-LP-A7HU-01 2 29443675 29443675 C T ALK Missense_Mutation p.R1181H 0.07 tolerated(0.08) probably_damaging(0.969) TCGA-LP-A7HU-01 2 32853359 32853359 G A TTC27 5'UTR 0.17 TCGA-LP-A7HU-01 2 54587459 54587460 AG - C2orf73 Frame_Shift_Del p.K210Rfs*25 0.36 TCGA-LP-A7HU-01 2 61632972 61632972 C G USP34 Missense_Mutation p.K141N 0.15 tolerated(0.3) benign(0.018) TCGA-LP-A7HU-01 2 74688764 74688764 C T MOGS Missense_Mutation p.D718N 0.20 tolerated(0.39) possibly_damaging(0.472) TCGA-LP-A7HU-01 2 86442711 86442711 G A REEP1 3'UTR 0.20 TCGA-LP-A7HU-01 2 97405604 97405604 C T LMAN2L Silent p.S58S 0.18 TCGA-LP-A7HU-01 3 10312129 10312129 C T TATDN2 Silent p.P421P 0.28 TCGA-LP-A7HU-01 3 125876203 125876203 C G ALDH1L1 Missense_Mutation p.E181Q 0.34 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-LP-A7HU-01 3 128809427 128809427 C T RAB43 3'UTR 0.18 TCGA-LP-A7HU-01 3 132294613 132294613 C G ACAD11 Intron 0.11 TCGA-LP-A7HU-01 3 132294631 132294631 C T ACAD11 Silent p.K662K 0.17 TCGA-LP-A7HU-01 3 138739178 138739178 T C PRR23B Missense_Mutation p.D109G 0.38 tolerated(0.19) probably_damaging(0.953) TCGA-LP-A7HU-01 3 147128760 147128760 C T ZIC1 Silent p.Y287Y 0.22 TCGA-LP-A7HU-01 3 15483221 15483221 C A EAF1 3'UTR 0.48 TCGA-LP-A7HU-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.39 deleterious(0.04) probably_damaging(0.96) TCGA-LP-A7HU-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-LP-A7HU-01 3 35778726 35778726 C T ARPP21 Nonsense_Mutation p.Q472* 0.17 TCGA-LP-A7HU-01 3 38590160 38590160 G T SCN5A 3'UTR 0.33 TCGA-LP-A7HU-01 3 40529636 40529636 C A ZNF619 Missense_Mutation p.N585K 0.43 tolerated_low_confidence(0.16) benign(0) TCGA-LP-A7HU-01 3 46244783 46244783 G C CCR1 Missense_Mutation p.S341C 0.43 deleterious(0) probably_damaging(0.976) TCGA-LP-A7HU-01 3 57232308 57232308 G A HESX1 Missense_Mutation p.R159W 0.15 deleterious(0) probably_damaging(1) TCGA-LP-A7HU-01 3 77611801 77611801 G C ROBO2 Splice_Site p.X496_splice 0.12 TCGA-LP-A7HU-01 3 87018250 87018250 G A VGLL3 Missense_Mutation p.R143W 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-LP-A7HU-01 4 183814220 183814220 G A DCTD Missense_Mutation p.A152V 0.25 deleterious(0) possibly_damaging(0.704) TCGA-LP-A7HU-01 4 37444966 37444966 A T KIAA1239 Missense_Mutation p.R452S 0.17 tolerated(0.43) probably_damaging(0.941) TCGA-LP-A7HU-01 4 42088148 42088148 G C SLC30A9 3'UTR 0.05 TCGA-LP-A7HU-01 4 44631497 44631497 C T YIPF7 Missense_Mutation p.D141N 0.19 deleterious(0.02) probably_damaging(1) TCGA-LP-A7HU-01 4 71644138 71644138 A G RUFY3 Missense_Mutation p.T293A 0.05 tolerated(0.52) probably_damaging(0.998) TCGA-LP-A7HU-01 5 122754060 122754060 G A CEP120 Nonsense_Mutation p.Q67* 0.17 TCGA-LP-A7HU-01 5 140502607 140502607 C T PCDHB4 Missense_Mutation p.P343S 0.11 tolerated_low_confidence(0.14) benign(0.004) TCGA-LP-A7HU-01 5 140603505 140603505 C G PCDHB14 Nonsense_Mutation p.S143* 0.15 TCGA-LP-A7HU-01 5 140604233 140604233 C G PCDHB14 Missense_Mutation p.Q386E 0.21 tolerated_low_confidence(0.11) benign(0.26) TCGA-LP-A7HU-01 5 146722798 146722798 T A STK32A Intron 0.28 TCGA-LP-A7HU-01 5 159696530 159696530 G A CCNJL Intron 0.27 TCGA-LP-A7HU-01 5 180661467 180661467 C T TRIM41 Missense_Mutation p.R529C 0.39 deleterious(0.04) benign(0.01) TCGA-LP-A7HU-01 5 40981528 40981528 G A C7 Silent p.S795S 0.33 TCGA-LP-A7HU-01 5 41307209 41307209 C T PLCXD3 3'UTR 0.11 TCGA-LP-A7HU-01 6 12120788 12120788 G C HIVEP1 Missense_Mutation p.E254Q 0.11 tolerated(0.47) benign(0.032) TCGA-LP-A7HU-01 6 151673302 151673302 C T AKAP12 Missense_Mutation p.S1259L 0.22 tolerated(0.06) benign(0.066) TCGA-LP-A7HU-01 6 157256607 157256607 C T ARID1B Missense_Mutation p.S645F 0.09 probably_damaging(0.935) TCGA-LP-A7HU-01 6 160210538 160210538 C A TCP1 5'UTR 0.08 TCGA-LP-A7HU-01 6 168708526 168708526 C T DACT2 Silent p.R637R 0.45 TCGA-LP-A7HU-01 6 22294638 22294638 G A PRL Silent p.F68F 0.27 TCGA-LP-A7HU-01 6 29556211 29556211 C T OR2H2 Silent p.L164L 0.18 TCGA-LP-A7HU-01 6 31777821 31777821 G C HSPA1L 3'UTR 0.15 TCGA-LP-A7HU-01 6 32364126 32364126 G A BTNL2 Silent p.L256L 0.25 TCGA-LP-A7HU-01 6 42657395 42657395 G A UBR2 Missense_Mutation p.D1705N 0.13 deleterious(0) probably_damaging(0.996) TCGA-LP-A7HU-01 6 43163825 43163825 G A CUL9 Missense_Mutation p.V803I 0.23 tolerated(0.92) benign(0) TCGA-LP-A7HU-01 6 43612821 43612821 G A RSPH9 5'UTR 0.21 TCGA-LP-A7HU-01 6 57512551 57512551 A G PRIM2 3'UTR 0.06 TCGA-LP-A7HU-01 7 112406040 112406040 T C TMEM168 3'UTR 0.19 TCGA-LP-A7HU-01 7 142120004 142120004 G A TRBV7-7 Nonsense_Mutation p.Q55* 0.26 TCGA-LP-A7HU-01 7 30198109 30198109 T G MTURN 3'UTR 0.34 TCGA-LP-A7HU-01 7 30898883 30898883 G A FAM188B Missense_Mutation p.G563D 0.30 deleterious(0) probably_damaging(0.93) TCGA-LP-A7HU-01 7 38269615 38269615 C T STARD3NL 3'UTR 0.17 TCGA-LP-A7HU-01 7 66420824 66420824 G A TMEM248 3'UTR 0.37 TCGA-LP-A7HU-01 7 76797094 76797094 C T CCDC146 Missense_Mutation p.R37W 0.21 deleterious(0.02) possibly_damaging(0.711) TCGA-LP-A7HU-01 7 8153554 8153554 C T ICA1 Silent p.%3D 0.32 TCGA-LP-A7HU-01 8 128752714 128752714 C T MYC Missense_Mutation p.S292L 0.06 deleterious(0.04) possibly_damaging(0.845) TCGA-LP-A7HU-01 8 20030592 20030592 G T SLC18A1 Silent p.R227R 0.35 TCGA-LP-A7HU-01 8 55538121 55538138 TGTCACATAATAATGGTT - RP1 In_Frame_Del p.S561_L566del 0.20 TCGA-LP-A7HU-01 8 69730697 69730697 G A C8orf34 3'UTR 0.06 TCGA-LP-A7HU-01 8 94934993 94934993 C T PDP1 Silent p.L261L 0.40 TCGA-LP-A7HU-01 9 117533 117533 C T FOXD4 Missense_Mutation p.R196H 0.08 deleterious(0) probably_damaging(0.999) TCGA-LP-A7HU-01 9 131591027 131591027 C T C9orf114 Silent p.E65E 0.21 TCGA-LP-A7HU-01 9 133327222 133327222 A G ASS1 5'UTR 0.34 TCGA-LP-A7HU-01 9 140069483 140069483 C T ANAPC2 Missense_Mutation p.E794K 0.15 deleterious(0) probably_damaging(0.99) TCGA-LP-A7HU-01 9 140622861 140622861 G T EHMT1 Nonsense_Mutation p.E235* 0.41 TCGA-LP-A7HU-01 9 17394799 17394799 G A CNTLN Missense_Mutation p.A783T 0.24 tolerated(0.54) benign(0.005) TCGA-LP-A7HU-01 9 86530456 86530456 G A KIF27 Silent p.C17C 0.16 TCGA-LP-A7HU-01 9 91610691 91610691 C T C9orf47 3'UTR 0.26 TCGA-LP-A7HU-01 X 114142166 114142166 T A HTR2C 3'UTR 0.21 TCGA-LP-A7HU-01 X 118979190 118979190 C G UPF3B Missense_Mutation p.R147T 0.20 deleterious(0.01) possibly_damaging(0.88) TCGA-LP-A7HU-01 X 128876102 128876102 C A XPNPEP2 Missense_Mutation p.T23K 0.12 deleterious_low_confidence(0.01) benign(0.013) TCGA-LP-A7HU-01 X 129042083 129042083 C T UTP14A Silent p.I50I 0.25 TCGA-LP-A7HU-01 X 13803802 13803802 C T GPM6B Missense_Mutation p.V103M 0.14 tolerated(0.25) benign(0.045) TCGA-LP-A7HU-01 X 140983110 140983110 A T MAGEC3 Missense_Mutation p.E322V 0.21 tolerated(0.05) benign(0.403) TCGA-LP-A7HU-01 X 14627259 14627259 G A GLRA2 Missense_Mutation p.A288T 0.13 deleterious(0.01) probably_damaging(0.928) TCGA-LP-A7HU-01 X 151869756 151869756 T C MAGEA6 Missense_Mutation p.V149A 0.14 tolerated(0.3) benign(0.222) TCGA-LP-A7HU-01 X 153692561 153692561 C T PLXNA3 Missense_Mutation p.A578V 0.46 tolerated(0.28) benign(0.002) TCGA-LP-A7HU-01 X 17768235 17768235 C T SCML1 Silent p.L175L 0.17 TCGA-LP-A7HU-01 X 20169216 20169216 T A RPS6KA3 3'UTR 0.09 TCGA-LP-A7HU-01 X 22095639 22095639 G A PHEX Missense_Mutation p.R161Q 0.24 tolerated(0.35) benign(0.377) TCGA-LP-A7HU-01 X 70824020 70824020 G A ACRC Missense_Mutation p.S298N 0.09 unknown(0) TCGA-LP-A7HU-01 X 70824021 70824021 C G ACRC Missense_Mutation p.S298R 0.09 unknown(0) TCGA-LP-A7HU-01 X 70837192 70837192 G A CXCR3 Missense_Mutation p.P91S 0.09 tolerated(0.92) benign(0.027) TCGA-LP-A7HU-01 X 75003785 75003785 G C MAGEE2 Missense_Mutation p.L368V 0.44 deleterious(0.01) probably_damaging(0.992) TCGA-MA-AA3W-01 10 105779528 105779535 ATTGAGGA - SLK Frame_Shift_Del p.E1059Kfs*17 0.44 TCGA-MA-AA3W-01 10 135278799 135278799 G A SPRN Intron 0.12 TCGA-MA-AA3W-01 10 29773747 29773747 T A SVIL Missense_Mutation p.D1598V 0.21 deleterious(0) probably_damaging(0.954) TCGA-MA-AA3W-01 11 48327808 48327808 T A OR4S1 Missense_Mutation p.L12I 0.23 tolerated(0.13) benign(0.196) TCGA-MA-AA3W-01 11 686905 686905 T C DEAF1 Missense_Mutation p.K253E 0.27 deleterious(0) possibly_damaging(0.721) TCGA-MA-AA3W-01 12 102107950 102107950 G A CHPT1 Missense_Mutation p.R119K 0.09 deleterious(0) probably_damaging(0.99) TCGA-MA-AA3W-01 12 123646677 123646677 G A MPHOSPH9 Silent p.L888L 0.42 TCGA-MA-AA3W-01 12 13906390 13906390 C A GRIN2B Missense_Mutation p.A291S 0.15 tolerated(0.25) benign(0.025) TCGA-MA-AA3W-01 12 18658326 18658326 C T PIK3C2G Missense_Mutation p.S1044L 0.21 deleterious(0) probably_damaging(0.982) TCGA-MA-AA3W-01 13 28891682 28891682 C A FLT1 Silent p.L1113L 0.26 TCGA-MA-AA3W-01 13 39612790 39612790 G A NHLRC3 Nonsense_Mutation p.W5* 0.25 TCGA-MA-AA3W-01 14 30066847 30066847 G A PRKD1 Missense_Mutation p.R762C 0.11 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3W-01 14 32560938 32560938 G A ARHGAP5 Missense_Mutation p.E355K 0.22 deleterious(0.01) possibly_damaging(0.844) TCGA-MA-AA3W-01 14 55647404 55647404 C A DLGAP5 Missense_Mutation p.A225S 0.08 tolerated(0.28) benign(0.003) TCGA-MA-AA3W-01 15 23931647 23931647 C T NDN Missense_Mutation p.V240I 0.26 deleterious(0) benign(0.252) TCGA-MA-AA3W-01 15 82444487 82444487 T G EFTUD1 Missense_Mutation p.S770R 0.23 tolerated(0.18) benign(0.14) TCGA-MA-AA3W-01 15 84659927 84659927 G A ADAMTSL3 Missense_Mutation p.A1312T 0.26 tolerated(0.62) benign(0.033) TCGA-MA-AA3W-01 16 1705962 1705962 G T CRAMP1L Nonsense_Mutation p.E402* 0.26 TCGA-MA-AA3W-01 16 19884134 19884134 G A GPRC5B Missense_Mutation p.H12Y 0.21 tolerated(0.54) benign(0.001) TCGA-MA-AA3W-01 16 78064695 78064695 G A CLEC3A Missense_Mutation p.R193H 0.17 deleterious(0.01) benign(0.013) TCGA-MA-AA3W-01 17 15974950 15974950 C T NCOR1 Missense_Mutation p.E1309K 0.18 possibly_damaging(0.524) TCGA-MA-AA3W-01 17 21825424 21825424 C T FAM27L RNA 0.07 TCGA-MA-AA3W-01 17 21909480 21909480 G A RP11-744K17.9 RNA 0.54 TCGA-MA-AA3W-01 17 2596122 2596122 C G CLUH Missense_Mutation p.M1049I 0.18 tolerated(0.24) benign(0.38) TCGA-MA-AA3W-01 17 3629301 3629301 C T GSG2 Missense_Mutation p.S691L 0.23 deleterious(0) probably_damaging(1) TCGA-MA-AA3W-01 17 39273730 39273730 A G KRTAP4-11 3'UTR 0.15 TCGA-MA-AA3W-01 17 48539602 48539602 G A ACSF2 Missense_Mutation p.V189I 0.12 tolerated(0.51) benign(0.001) TCGA-MA-AA3W-01 17 67121048 67121048 G A ABCA6 Silent p.Y416Y 0.04 TCGA-MA-AA3W-01 18 14511904 14511904 C T POTEC Nonsense_Mutation p.W541* 0.24 TCGA-MA-AA3W-01 18 33290687 33290687 C T GALNT1 3'UTR 0.18 TCGA-MA-AA3W-01 18 55355590 55355590 C A ATP8B1 Missense_Mutation p.G457V 0.04 deleterious(0) probably_damaging(0.996) TCGA-MA-AA3W-01 19 15636317 15636317 G A CYP4F22 Missense_Mutation p.R57H 0.12 deleterious(0.02) benign(0.002) TCGA-MA-AA3W-01 19 42341328 42341328 C A LYPD4 Silent p.V210V 0.29 TCGA-MA-AA3W-01 19 45259510 45259510 G A BCL3 Silent p.V144V 0.08 TCGA-MA-AA3W-01 19 52131187 52131187 C T SIGLEC5 Silent p.L299L 0.06 TCGA-MA-AA3W-01 19 53995913 53995913 C T ZNF813 3'UTR 0.33 TCGA-MA-AA3W-01 19 54379230 54379230 A C MYADM 3'UTR 0.11 TCGA-MA-AA3W-01 19 56244026 56244026 G A NLRP9 Nonsense_Mutation p.R391* 0.27 TCGA-MA-AA3W-01 19 58920521 58920521 G T ZNF584 Missense_Mutation p.G3W 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.867) TCGA-MA-AA3W-01 1 147091042 147091042 C T BCL9 Missense_Mutation p.R361C 0.09 deleterious(0) probably_damaging(0.997) TCGA-MA-AA3W-01 1 161519818 161519818 C G FCGR3A 5'UTR 0.31 TCGA-MA-AA3W-01 1 179076794 179076794 C A ABL2 3'UTR 0.28 TCGA-MA-AA3W-01 1 202794342 202794354 TGCAGCAAGGGGA - RP11-480I12.4 5'UTR 0.15 TCGA-MA-AA3W-01 1 235416105 235416105 C T ARID4B Silent p.E98E 0.16 TCGA-MA-AA3W-01 1 29319996 29319996 G A EPB41 Missense_Mutation p.R208K 0.28 tolerated(1) benign(0.111) TCGA-MA-AA3W-01 1 38453482 38453482 C T SF3A3 Silent p.L57L 0.24 TCGA-MA-AA3W-01 20 1895905 1895905 C A SIRPA Nonsense_Mutation p.Y80* 0.21 TCGA-MA-AA3W-01 20 60893619 60893619 T G LAMA5 Missense_Mutation p.H2377P 0.29 benign(0.024) TCGA-MA-AA3W-01 20 61942774 61942774 C T COL20A1 Silent p.T474T 0.05 TCGA-MA-AA3W-01 21 31066221 31066221 G A GRIK1 Missense_Mutation p.R94W 0.14 deleterious(0) possibly_damaging(0.88) TCGA-MA-AA3W-01 21 43410295 43410295 C T ZBTB21 3'UTR 0.41 TCGA-MA-AA3W-01 21 47845764 47845764 G A PCNT Missense_Mutation p.R2400H 0.19 benign(0.046) TCGA-MA-AA3W-01 22 38028810 38028810 C G GGA1 3'UTR 0.33 TCGA-MA-AA3W-01 22 44351336 44351336 G C SAMM50 5'UTR 0.40 TCGA-MA-AA3W-01 22 44351337 44351337 G C SAMM50 5'UTR 0.40 TCGA-MA-AA3W-01 2 102805768 102805768 A T IL1RL2 Silent p.I97I 0.30 TCGA-MA-AA3W-01 2 119600489 119600489 C T EN1 3'UTR 0.09 TCGA-MA-AA3W-01 2 168099781 168099781 G A XIRP2 Missense_Mutation p.D627N 0.24 probably_damaging(0.974) TCGA-MA-AA3W-01 2 27699534 27699534 A G IFT172 Missense_Mutation p.L462P 0.28 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3W-01 2 98846667 98846667 G T VWA3B Missense_Mutation p.A769S 0.12 deleterious(0.01) probably_damaging(0.983) TCGA-MA-AA3W-01 3 11080116 11080116 A G SLC6A1 3'UTR 0.19 TCGA-MA-AA3W-01 3 14508104 14508104 C T SLC6A6 Silent p.G271G 0.23 TCGA-MA-AA3W-01 3 175042094 175042094 C T NAALADL2 Missense_Mutation p.T357M 0.13 deleterious(0) possibly_damaging(0.875) TCGA-MA-AA3W-01 3 49940930 49940930 C T MST1R Missense_Mutation p.R38H 0.43 tolerated(0.07) benign(0.082) TCGA-MA-AA3W-01 3 50334692 50334692 C T NAT6 Missense_Mutation p.R90Q 0.16 deleterious(0.01) possibly_damaging(0.894) TCGA-MA-AA3W-01 3 67568715 67568715 G A SUCLG2 Missense_Mutation p.R206W 0.24 deleterious(0.02) benign(0.04) TCGA-MA-AA3W-01 4 435942 435942 C T ZNF721 Missense_Mutation p.E772K 0.21 tolerated(0.58) benign(0.01) TCGA-MA-AA3W-01 5 127522204 127522204 C T SLC12A2 Nonsense_Mutation p.R1174* 0.29 TCGA-MA-AA3W-01 5 140222551 140222551 G A PCDHA8 Missense_Mutation p.V549M 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.694) TCGA-MA-AA3W-01 5 152870373 152870373 G A GRIA1 5'Flank 0.22 TCGA-MA-AA3W-01 5 163122 163122 C T PLEKHG4B Missense_Mutation p.R623C 0.21 tolerated(0.07) benign(0.002) TCGA-MA-AA3W-01 5 251128 251128 G A SDHA Missense_Mutation p.V525M 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.901) TCGA-MA-AA3W-01 6 147122367 147122367 G T ADGB Missense_Mutation p.R1529L 0.28 tolerated(0.13) benign(0.062) TCGA-MA-AA3W-01 6 152646254 152646254 C T SYNE1 Missense_Mutation p.D5208N 0.06 possibly_damaging(0.678) TCGA-MA-AA3W-01 7 100345218 100345218 A G ZAN Missense_Mutation p.N326S 0.15 benign(0.187) TCGA-MA-AA3W-01 7 151874231 151874231 C G KMT2C Missense_Mutation p.K2769N 0.28 probably_damaging(0.999) TCGA-MA-AA3W-01 7 151875095 151875095 T A KMT2C Missense_Mutation p.R2481S 0.33 probably_damaging(0.998) TCGA-MA-AA3W-01 7 42972046 42972046 C T MRPL32 Nonsense_Mutation p.R21* 0.10 TCGA-MA-AA3W-01 7 66410181 66410181 C T TMEM248 Silent p.F126F 0.38 TCGA-MA-AA3W-01 7 66456257 66456257 T G SBDS Missense_Mutation p.K164T 0.23 tolerated(0.72) benign(0.003) TCGA-MA-AA3W-01 7 81374429 81374429 G A HGF Silent p.C211C 0.12 TCGA-MA-AA3W-01 7 96635541 96635541 C T DLX6 Silent p.G84G 0.26 TCGA-MA-AA3W-01 8 103307431 103307431 C T UBR5 Splice_Site p.X1353_splice 0.26 TCGA-MA-AA3W-01 8 25156599 25156599 A G DOCK5 Missense_Mutation p.D249G 0.20 tolerated(0.34) benign(0.001) TCGA-MA-AA3W-01 8 3855503 3855503 G A CSMD1 Missense_Mutation p.A247V 0.12 probably_damaging(0.998) TCGA-MA-AA3W-01 8 63927876 63927876 A G GGH 3'UTR 0.21 TCGA-MA-AA3W-01 8 71574014 71574014 C G LACTB2 Missense_Mutation p.D81H 0.07 deleterious(0) probably_damaging(1) TCGA-MA-AA3W-01 8 95732189 95732189 C T DPY19L4 5'UTR 0.30 TCGA-MA-AA3W-01 9 127074812 127074812 C T NEK6 Missense_Mutation p.R73C 0.28 tolerated_low_confidence(0.11) benign(0.009) TCGA-MA-AA3W-01 9 128230300 128230300 G A MAPKAP1 Silent p.I432I 0.15 TCGA-MA-AA3W-01 9 130476692 130476692 C G PTRH1 Missense_Mutation p.G143A 0.20 deleterious(0) probably_damaging(1) TCGA-MA-AA3W-01 9 130478511 130478511 G A PTRH1 5'UTR 0.40 TCGA-MA-AA3W-01 X 119388413 119388413 T G ZBTB33 Silent p.L381L 0.04 TCGA-MA-AA3W-01 X 150349094 150349094 C T GPR50 Missense_Mutation p.R347C 0.28 tolerated(0.1) benign(0.001) TCGA-MA-AA3W-01 X 70443876 70443876 C T GJB1 Missense_Mutation p.R107W 0.14 deleterious(0.01) possibly_damaging(0.816) TCGA-MA-AA3X-01 10 121191015 121191015 C T GRK5 Silent p.L238L 0.19 TCGA-MA-AA3X-01 10 43612172 43612172 G A RET Missense_Mutation p.M759I 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-MA-AA3X-01 10 60028987 60028987 G A CISD1 5'UTR 0.26 TCGA-MA-AA3X-01 10 60129371 60129371 T A UBE2D1 3'UTR 0.33 TCGA-MA-AA3X-01 10 71662585 71662585 G C COL13A1 Missense_Mutation p.G288R 0.23 deleterious(0) probably_damaging(1) TCGA-MA-AA3X-01 11 118886318 118886318 C G CCDC84 3'UTR 0.33 TCGA-MA-AA3X-01 11 8933013 8933013 C T AKIP1 Missense_Mutation p.A6V 0.12 tolerated_low_confidence(0.37) benign(0.075) TCGA-MA-AA3X-01 12 107393778 107393778 C T CRY1 Missense_Mutation p.R256Q 0.66 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3X-01 12 120779582 120779582 C A MSI1 3'UTR 0.68 TCGA-MA-AA3X-01 12 132284047 132284047 G A SFSWAP 3'UTR 0.37 TCGA-MA-AA3X-01 12 15100806 15100806 C A ARHGDIB Splice_Site p.X114_splice 0.31 TCGA-MA-AA3X-01 12 31944230 31944230 A T H3F3C 3'UTR 0.07 TCGA-MA-AA3X-01 12 53459259 53459259 C A SPRYD3 3'UTR 0.60 TCGA-MA-AA3X-01 12 57548376 57548376 G A LRP1 Silent p.T373T 0.25 TCGA-MA-AA3X-01 12 9393936 9393936 A G LINC00987 RNA 0.80 TCGA-MA-AA3X-01 13 101315293 101315293 C T TMTC4 Silent p.R159R 0.41 TCGA-MA-AA3X-01 13 108882281 108882281 C T ABHD13 Missense_Mutation p.P239S 0.39 deleterious(0) probably_damaging(1) TCGA-MA-AA3X-01 13 36049706 36049706 G A MAB21L1 Silent p.P190P 0.50 TCGA-MA-AA3X-01 14 24626533 24626533 A G RNF31 Missense_Mutation p.D843G 0.16 tolerated(0.17) benign(0.002) TCGA-MA-AA3X-01 14 68260904 68260904 C T ZFYVE26 Silent p.L795L 0.21 TCGA-MA-AA3X-01 14 94046611 94046611 G A UNC79 Silent p.Q673Q 0.10 TCGA-MA-AA3X-01 14 95053799 95053799 C A SERPINA5 Missense_Mutation p.L34I 0.17 tolerated(0.36) benign(0.109) TCGA-MA-AA3X-01 14 95577792 95577792 G A DICER1 Silent p.G706G 0.62 TCGA-MA-AA3X-01 15 40505641 40505641 G A BUB1B Missense_Mutation p.D882N 0.26 tolerated(0.17) possibly_damaging(0.67) TCGA-MA-AA3X-01 15 43927590 43927590 T G CATSPER2 Silent p.A382A 0.36 TCGA-MA-AA3X-01 15 44068039 44068039 G A ELL3 Missense_Mutation p.P122S 0.36 tolerated(0.12) benign(0.153) TCGA-MA-AA3X-01 16 30116136 30116136 G A GDPD3 3'UTR 0.09 TCGA-MA-AA3X-01 16 67035289 67035289 C T CES4A Silent p.I205I 0.22 TCGA-MA-AA3X-01 16 87743110 87743110 G A KLHDC4 Missense_Mutation p.T403I 0.24 tolerated(0.19) benign(0.027) TCGA-MA-AA3X-01 16 88502692 88502692 C T ZNF469 Silent p.F2910F 0.09 TCGA-MA-AA3X-01 17 10304887 10304887 C G MYH8 Missense_Mutation p.E968D 0.28 deleterious(0) possibly_damaging(0.777) TCGA-MA-AA3X-01 17 2224606 2224606 G A SRR Missense_Mutation p.E136K 0.36 deleterious(0.04) benign(0.06) TCGA-MA-AA3X-01 17 43310620 43310620 G A FMNL1 Silent p.Q119Q 0.69 TCGA-MA-AA3X-01 17 43318837 43318837 C T FMNL1 Missense_Mutation p.S474L 0.50 tolerated(0.09) unknown(0) TCGA-MA-AA3X-01 17 67538148 67538149 TG - MAP2K6 3'UTR 0.23 TCGA-MA-AA3X-01 17 76235973 76235973 G A TMEM235 3'UTR 0.09 TCGA-MA-AA3X-01 18 14105576 14105576 C A ZNF519 Missense_Mutation p.K321N 0.20 deleterious(0.01) benign(0.276) TCGA-MA-AA3X-01 18 30350379 30350379 C T KLHL14 Missense_Mutation p.R59Q 0.36 deleterious(0.01) possibly_damaging(0.691) TCGA-MA-AA3X-01 19 13372309 13372309 A T CACNA1A Missense_Mutation p.F1402Y 0.20 possibly_damaging(0.682) TCGA-MA-AA3X-01 19 15839076 15839076 G A OR10H2 Missense_Mutation p.V75M 0.41 tolerated(0.11) benign(0.148) TCGA-MA-AA3X-01 19 30936362 30936362 C T ZNF536 Silent p.T631T 0.36 TCGA-MA-AA3X-01 19 37441138 37441138 T G ZNF568 Silent p.P361P 0.08 TCGA-MA-AA3X-01 19 38673288 38673288 C G SIPA1L3 Missense_Mutation p.F1446L 0.09 deleterious(0.02) benign(0.23) TCGA-MA-AA3X-01 19 42796747 42796750 CAGG - CIC Frame_Shift_Del p.Q1069Wfs*23 0.41 TCGA-MA-AA3X-01 19 52729262 52729262 C T PPP2R1A 3'UTR 0.36 TCGA-MA-AA3X-01 1 154461824 154461824 G A SHE Nonsense_Mutation p.R243* 0.21 TCGA-MA-AA3X-01 1 156616618 156616618 C T BCAN Silent p.I39I 0.32 TCGA-MA-AA3X-01 1 174417923 174417923 A T GPR52 Missense_Mutation p.H225L 0.17 tolerated(0.12) possibly_damaging(0.464) TCGA-MA-AA3X-01 1 20518848 20518848 C T UBXN10 3'UTR 0.49 TCGA-MA-AA3X-01 1 205588106 205588106 T C ELK4 Silent p.Q392Q 0.39 TCGA-MA-AA3X-01 1 210948725 210948725 G A KCNH1 Missense_Mutation p.R693W 0.15 deleterious(0) probably_damaging(0.974) TCGA-MA-AA3X-01 1 216371733 216371733 A G USH2A Silent p.Y1335Y 0.18 TCGA-MA-AA3X-01 1 240072645 240072645 G A CHRM3 3'UTR 0.12 TCGA-MA-AA3X-01 1 248128856 248128856 T C OR2AK2 Missense_Mutation p.Y75H 0.35 deleterious(0.03) benign(0.046) TCGA-MA-AA3X-01 1 27239997 27239997 C T NR0B2 Silent p.A145A 0.13 TCGA-MA-AA3X-01 1 39913244 39913244 G A MACF1 Silent p.Q4523Q 0.20 TCGA-MA-AA3X-01 1 48688546 48688546 C T SLC5A9 Silent p.V46V 0.21 TCGA-MA-AA3X-01 1 75038799 75038799 T G C1orf173 Missense_Mutation p.K865N 0.33 tolerated(0.18) benign(0.018) TCGA-MA-AA3X-01 1 78195562 78195562 G A USP33 Missense_Mutation p.R265W 0.08 deleterious(0) probably_damaging(1) TCGA-MA-AA3X-01 1 93312793 93312793 T C FAM69A Missense_Mutation p.T141A 0.31 deleterious(0.05) benign(0.323) TCGA-MA-AA3X-01 20 31685516 31685516 G A BPIFB4 Missense_Mutation p.V498M 0.27 deleterious(0.05) probably_damaging(0.994) TCGA-MA-AA3X-01 20 3731467 3731467 T C HSPA12B Missense_Mutation p.W440R 0.44 deleterious(0) probably_damaging(0.987) TCGA-MA-AA3X-01 20 9543669 9543669 G A PAK7 Silent p.V495V 0.32 TCGA-MA-AA3X-01 21 22696752 22696752 G T NCAM2 Missense_Mutation p.E223D 0.16 tolerated(1) benign(0) TCGA-MA-AA3X-01 22 21072051 21072051 G A PI4KA Silent p.G1754G 0.33 TCGA-MA-AA3X-01 22 42204884 42204884 G A CCDC134 5'UTR 0.31 TCGA-MA-AA3X-01 22 50644849 50644849 G A SELO Missense_Mutation p.V220I 0.41 tolerated(0.2) possibly_damaging(0.683) TCGA-MA-AA3X-01 2 187693226 187693226 C T ZSWIM2 Missense_Mutation p.E463K 0.19 deleterious(0.01) benign(0.024) TCGA-MA-AA3X-01 2 202245207 202245207 C T TRAK2 3'UTR 0.22 TCGA-MA-AA3X-01 2 208632651 208632651 G A FZD5 Silent p.I271I 0.59 TCGA-MA-AA3X-01 2 227968711 227968711 A C COL4A4 Missense_Mutation p.F265V 0.45 benign(0.17) TCGA-MA-AA3X-01 2 71654465 71654465 A G ZNF638 Silent p.E1822E 0.41 TCGA-MA-AA3X-01 3 122419839 122419839 G A PARP14 Missense_Mutation p.R813Q 0.32 tolerated(1) benign(0) TCGA-MA-AA3X-01 3 134079191 134079191 C T AMOTL2 Missense_Mutation p.R547Q 0.12 tolerated(0.16) benign(0.022) TCGA-MA-AA3X-01 3 141884092 141884109 GCATGGTACTTGACCCAG - GK5 3'UTR 0.44 TCGA-MA-AA3X-01 3 148459909 148459909 C T AGTR1 3'UTR 0.14 TCGA-MA-AA3X-01 3 151150595 151150595 C T MED12L 3'UTR 0.34 TCGA-MA-AA3X-01 3 15492805 15492805 C G COLQ 3'UTR 0.08 TCGA-MA-AA3X-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.18 deleterious(0.04) probably_damaging(0.96) TCGA-MA-AA3X-01 3 185361701 185361701 G A IGF2BP2 3'UTR 0.14 TCGA-MA-AA3X-01 3 195510844 195510844 G C MUC4 Nonsense_Mutation p.S2536* 0.05 TCGA-MA-AA3X-01 3 38180216 38180216 G A MYD88 Missense_Mutation p.G22R 0.52 tolerated(0.09) probably_damaging(0.979) TCGA-MA-AA3X-01 4 177037120 177037120 C A WDR17 Missense_Mutation p.D123E 0.36 tolerated(0.35) benign(0.081) TCGA-MA-AA3X-01 4 69795613 69795613 G C UGT2A3 Missense_Mutation p.T501S 0.33 tolerated(0.15) benign(0.1) TCGA-MA-AA3X-01 5 124036854 124036854 G A ZNF608 Missense_Mutation p.P339S 0.21 tolerated(0.07) probably_damaging(0.959) TCGA-MA-AA3X-01 5 139944097 139944097 G A SLC35A4 5'Flank 0.30 TCGA-MA-AA3X-01 5 176696676 176696676 G A NSD1 Missense_Mutation p.E1793K 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-MA-AA3X-01 5 35659271 35659271 C T SPEF2 Nonsense_Mutation p.R377* 0.33 TCGA-MA-AA3X-01 5 38490364 38490364 A T LIFR Missense_Mutation p.F699I 0.16 tolerated(0.05) possibly_damaging(0.677) TCGA-MA-AA3X-01 5 56189448 56189448 C T MAP3K1 Nonsense_Mutation p.Q1494* 0.27 TCGA-MA-AA3X-01 5 66462558 66462558 G A MAST4 Silent p.K2517K 0.08 TCGA-MA-AA3X-01 6 108985004 108985004 G T FOXO3 Missense_Mutation p.R323L 0.41 deleterious(0) probably_damaging(0.975) TCGA-MA-AA3X-01 6 10930656 10930656 C G SYCP2L Silent p.T514T 0.25 TCGA-MA-AA3X-01 6 111670425 111670425 T G REV3L Missense_Mutation p.N2472T 0.22 tolerated(0.97) benign(0.119) TCGA-MA-AA3X-01 6 153078228 153078228 C A VIP Intron 0.34 TCGA-MA-AA3X-01 6 30122152 30122152 C T TRIM10 Missense_Mutation p.R347H 0.31 deleterious(0) probably_damaging(0.91) TCGA-MA-AA3X-01 6 31850557 31850557 C T EHMT2 Missense_Mutation p.R1039Q 0.32 deleterious(0) probably_damaging(0.934) TCGA-MA-AA3X-01 6 76018458 76018458 C T FILIP1 Silent p.L1197L 0.35 TCGA-MA-AA3X-01 6 96653099 96653099 G A FUT9 3'UTR 0.09 TCGA-MA-AA3X-01 7 108524088 108524088 A C C7orf66 Silent p.S108S 0.27 TCGA-MA-AA3X-01 7 48313832 48313832 T C ABCA13 Silent p.T1523T 0.13 TCGA-MA-AA3X-01 8 108276501 108276501 T G ANGPT1 Missense_Mutation p.K428N 0.08 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3X-01 8 113267583 113267583 C T CSMD3 Silent p.E3312E 0.08 TCGA-MA-AA3X-01 8 144522222 144522222 G C ZC3H3 Missense_Mutation p.T935S 0.17 tolerated(0.72) benign(0.002) TCGA-MA-AA3X-01 8 24366104 24366104 G A ADAM7 3'UTR 0.05 TCGA-MA-AA3X-01 8 41788202 41788202 G A KAT6A 3'UTR 0.14 TCGA-MA-AA3X-01 8 57076234 57076234 A G PLAG1 3'UTR 0.28 TCGA-MA-AA3X-01 8 71069425 71069425 C T NCOA2 Missense_Mutation p.G392E 0.21 deleterious(0.04) possibly_damaging(0.654) TCGA-MA-AA3X-01 8 99961313 99961313 G A OSR2 Missense_Mutation p.A45T 0.41 deleterious_low_confidence(0.04) benign(0.036) TCGA-MA-AA3X-01 9 132890965 132890965 A - GPR107 Frame_Shift_Del p.Y544Lfs*27 0.20 TCGA-MA-AA3X-01 9 139306948 139306948 T C PMPCA Missense_Mutation p.I94T 0.42 deleterious(0) possibly_damaging(0.905) TCGA-MA-AA3X-01 9 71863306 71863306 C T TJP2 Intron 0.60 TCGA-MA-AA3X-01 X 100387280 100387280 T C CENPI Silent p.P463P 0.06 TCGA-MA-AA3X-01 X 106893481 106893481 A T PRPS1 3'UTR 0.17 TCGA-MA-AA3X-01 X 130410923 130410923 G A IGSF1 Silent p.L871L 0.16 TCGA-MA-AA3X-01 X 35820918 35820918 A G MAGEB16 Missense_Mutation p.K202R 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-MA-AA3X-01 X 50336286 50336286 G A SHROOM4 3'UTR 0.15 TCGA-MA-AA3Y-01 10 114203285 114203285 C G ZDHHC6 Missense_Mutation p.R116T 0.23 deleterious(0) probably_damaging(0.989) TCGA-MA-AA3Y-01 10 115991305 115991305 G A TDRD1 3'UTR 0.24 TCGA-MA-AA3Y-01 10 13688853 13688853 G A FRMD4A 3'UTR 0.21 TCGA-MA-AA3Y-01 10 17110744 17110744 G A CUBN Missense_Mutation p.S884F 0.19 deleterious(0) probably_damaging(0.98) TCGA-MA-AA3Y-01 10 49933953 49933953 C G WDFY4 Missense_Mutation p.Q207E 0.19 tolerated(0.51) benign(0.014) TCGA-MA-AA3Y-01 10 88441375 88441375 G A LDB3 Silent p.L168L 0.21 TCGA-MA-AA3Y-01 10 89514013 89514013 G A ATAD1 3'UTR 0.31 TCGA-MA-AA3Y-01 10 93741945 93741945 G A BTAF1 Missense_Mutation p.D671N 0.27 tolerated(0.15) possibly_damaging(0.857) TCGA-MA-AA3Y-01 10 94452258 94452258 C T HHEX Silent p.P165P 0.23 TCGA-MA-AA3Y-01 11 116797932 116797932 C T SIK3 Intron 0.17 TCGA-MA-AA3Y-01 11 122929851 122929851 G A HSPA8 Silent p.L413L 0.20 TCGA-MA-AA3Y-01 11 128680623 128680623 C G FLI1 Missense_Mutation p.Q367E 0.25 deleterious(0) probably_damaging(0.955) TCGA-MA-AA3Y-01 11 34515180 34515180 G A ELF5 Silent p.C77C 0.26 TCGA-MA-AA3Y-01 11 40137439 40137439 C T LRRC4C Missense_Mutation p.R135H 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-MA-AA3Y-01 11 55321987 55321987 C T OR4C15 Missense_Mutation p.L69F 0.17 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-MA-AA3Y-01 11 58207442 58207442 G C OR5B12 Silent p.L61L 0.17 TCGA-MA-AA3Y-01 11 65687307 65687307 G A DRAP1 Silent p.A33A 0.28 TCGA-MA-AA3Y-01 11 6631790 6631790 G A ILK Missense_Mutation p.R436Q 0.16 deleterious(0.03) benign(0.293) TCGA-MA-AA3Y-01 11 66358116 66358116 C G CCDC87 Missense_Mutation p.E791Q 0.11 tolerated(0.1) possibly_damaging(0.624) TCGA-MA-AA3Y-01 11 66358263 66358263 C G CCDC87 Missense_Mutation p.E742Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3Y-01 11 67160250 67160250 G A RAD9A Missense_Mutation p.M77I 0.17 tolerated(0.36) benign(0.093) TCGA-MA-AA3Y-01 11 6942488 6942488 G C OR2D3 Missense_Mutation p.D86H 0.20 deleterious(0.01) possibly_damaging(0.623) TCGA-MA-AA3Y-01 11 72319725 72319725 G A PDE2A Missense_Mutation p.S72L 0.19 tolerated_low_confidence(0.16) benign(0.003) TCGA-MA-AA3Y-01 11 73872544 73872544 C T C2CD3 Missense_Mutation p.R128K 0.15 tolerated(0.11) benign(0.073) TCGA-MA-AA3Y-01 11 84027991 84027991 C - DLG2 Intron 0.12 TCGA-MA-AA3Y-01 11 9406331 9406331 C G IPO7 Missense_Mutation p.I7M 0.19 deleterious(0.01) possibly_damaging(0.791) TCGA-MA-AA3Y-01 12 108169591 108169591 G A ASCL4 3'UTR 0.22 TCGA-MA-AA3Y-01 12 108962958 108962958 G C ISCU 3'UTR 0.19 TCGA-MA-AA3Y-01 12 122498852 122498852 G A BCL7A 3'UTR 0.22 TCGA-MA-AA3Y-01 12 130833920 130833920 G A PIWIL1 Missense_Mutation p.E291K 0.24 tolerated(0.49) benign(0.179) TCGA-MA-AA3Y-01 12 21622567 21622567 C G PYROXD1 3'UTR 0.21 TCGA-MA-AA3Y-01 12 4383001 4383001 G A CCND2 5'UTR 0.22 TCGA-MA-AA3Y-01 12 46320993 46320993 G C SCAF11 Missense_Mutation p.Q831E 0.37 deleterious(0.02) benign(0.055) TCGA-MA-AA3Y-01 12 48547209 48547209 C T ASB8 Missense_Mutation p.R24Q 0.17 tolerated(0.08) possibly_damaging(0.602) TCGA-MA-AA3Y-01 12 49448791 49448791 G A KMT2D Missense_Mutation p.S23F 0.24 unknown(0) TCGA-MA-AA3Y-01 12 51589925 51589925 G C POU6F1 Nonsense_Mutation p.S26* 0.28 TCGA-MA-AA3Y-01 12 5744418 5744418 G A ANO2 Silent p.V572V 0.22 TCGA-MA-AA3Y-01 12 5941734 5941734 C T ANO2 Silent p.K219K 0.12 TCGA-MA-AA3Y-01 12 6833768 6833768 C G COPS7A Intron 0.21 TCGA-MA-AA3Y-01 12 69050132 69050132 G C RAP1B Missense_Mutation p.R124T 0.30 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3Y-01 12 94964606 94964606 C G TMCC3 3'UTR 0.17 TCGA-MA-AA3Y-01 13 35733796 35733796 C G NBEA Missense_Mutation p.S1163C 0.27 deleterious_low_confidence(0) benign(0.405) TCGA-MA-AA3Y-01 13 39262048 39262048 C T FREM2 Silent p.V189V 0.22 TCGA-MA-AA3Y-01 13 39264782 39264782 G A FREM2 Missense_Mutation p.D1101N 0.29 deleterious(0.01) benign(0.04) TCGA-MA-AA3Y-01 13 96261737 96261737 G C DZIP1 Missense_Mutation p.S465C 0.18 deleterious(0.02) benign(0.28) TCGA-MA-AA3Y-01 14 102552583 102552583 G A HSP90AA1 Silent p.L167L 0.16 TCGA-MA-AA3Y-01 14 106877763 106877763 C T IGHV4-39 Silent p.G77G 0.10 TCGA-MA-AA3Y-01 14 20216056 20216056 C G OR4Q3 Missense_Mutation p.S157C 0.15 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3Y-01 14 24777051 24777051 G C CIDEB Nonsense_Mutation p.S5* 0.15 TCGA-MA-AA3Y-01 14 69255840 69255840 G A ZFP36L1 3'UTR 0.21 TCGA-MA-AA3Y-01 14 75361105 75361105 G A DLST Missense_Mutation p.D255N 0.18 deleterious(0) probably_damaging(1) TCGA-MA-AA3Y-01 14 75361110 75361110 G A DLST Missense_Mutation p.M256I 0.16 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3Y-01 15 33991979 33991979 G A RYR3 Silent p.Q2108Q 0.18 TCGA-MA-AA3Y-01 15 42135904 42135904 C T PLA2G4B Silent p.F489F 0.35 TCGA-MA-AA3Y-01 15 63901303 63901303 C T HERC1 Missense_Mutation p.E4855K 0.20 benign(0.218) TCGA-MA-AA3Y-01 15 65946267 65946267 C T SLC24A1 Silent p.L1050L 0.13 TCGA-MA-AA3Y-01 16 11439382 11439382 G A RMI2 Silent p.P18P 0.13 TCGA-MA-AA3Y-01 16 2220641 2220641 C A TRAF7 Silent p.S86S 0.37 TCGA-MA-AA3Y-01 16 2551386 2551386 G A TBC1D24 3'UTR 0.16 TCGA-MA-AA3Y-01 16 29937120 29937120 C G KCTD13 Missense_Mutation p.D79H 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-MA-AA3Y-01 16 29937424 29937424 C T KCTD13 5'UTR 0.50 TCGA-MA-AA3Y-01 16 427823 427823 G C TMEM8A Missense_Mutation p.F49L 0.19 deleterious(0.04) possibly_damaging(0.888) TCGA-MA-AA3Y-01 16 66756436 66756436 G A DYNC1LI2 3'UTR 0.25 TCGA-MA-AA3Y-01 16 67686242 67686243 - GTAA RLTPR Frame_Shift_Ins 0.23 TCGA-MA-AA3Y-01 16 70400064 70400064 C G DDX19A Silent p.L227L 0.22 TCGA-MA-AA3Y-01 17 14205177 14205177 G C HS3ST3B1 Missense_Mutation p.Q114H 0.34 tolerated(0.05) benign(0.058) TCGA-MA-AA3Y-01 17 15522556 15522556 G A CDRT1 Missense_Mutation p.R91W 0.28 deleterious(0) probably_damaging(0.912) TCGA-MA-AA3Y-01 17 18030465 18030465 G T MYO15A Nonsense_Mutation p.E1340* 0.37 TCGA-MA-AA3Y-01 17 18566525 18566525 C G ZNF286B Missense_Mutation p.L98F 0.20 tolerated(0.18) benign(0.002) TCGA-MA-AA3Y-01 17 29541555 29541555 C G NF1 Silent p.L493L 0.31 TCGA-MA-AA3Y-01 17 3593896 3593896 C T P2RX5 Intron 0.23 TCGA-MA-AA3Y-01 17 55927389 55927389 G C MRPS23 5'UTR 0.49 TCGA-MA-AA3Y-01 17 61838605 61838605 C T CCDC47 Missense_Mutation p.M218I 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-MA-AA3Y-01 17 61841452 61841452 C G CCDC47 Missense_Mutation p.K157N 0.15 tolerated(0.11) probably_damaging(0.931) TCGA-MA-AA3Y-01 17 61841470 61841470 C G CCDC47 Missense_Mutation p.M151I 0.17 tolerated(0.73) benign(0.009) TCGA-MA-AA3Y-01 18 34465527 34465527 G C KIAA1328 Missense_Mutation p.E114Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-MA-AA3Y-01 18 61569080 61569080 G C SERPINB2 Missense_Mutation p.K214N 0.19 tolerated(0.22) benign(0.109) TCGA-MA-AA3Y-01 19 10265387 10265387 G A DNMT1 Silent p.H569H 0.21 TCGA-MA-AA3Y-01 19 10405182 10405182 G A ICAM5 Missense_Mutation p.G699E 0.26 tolerated(0.95) benign(0.122) TCGA-MA-AA3Y-01 19 11728437 11728437 T G ZNF627 Missense_Mutation p.S373R 0.20 tolerated(0.32) benign(0.343) TCGA-MA-AA3Y-01 19 15271837 15271837 G A NOTCH3 Missense_Mutation p.P2201L 0.27 deleterious(0.04) benign(0.001) TCGA-MA-AA3Y-01 19 17729718 17729718 G C UNC13A Silent p.L1442L 0.28 TCGA-MA-AA3Y-01 19 2151282 2151282 G A AP3D1 Silent p.L18L 0.21 TCGA-MA-AA3Y-01 19 38378469 38378469 G T WDR87 Missense_Mutation p.L1909M 0.18 probably_damaging(0.946) TCGA-MA-AA3Y-01 19 40198011 40198011 C T LGALS14 Missense_Mutation p.R125C 0.19 deleterious(0.03) benign(0.013) TCGA-MA-AA3Y-01 19 42731280 42731280 G C ZNF526 3'UTR 0.18 TCGA-MA-AA3Y-01 19 42792078 42792078 G A CIC Silent p.E294E 0.14 TCGA-MA-AA3Y-01 19 42792089 42792089 G A CIC Missense_Mutation p.R298Q 0.12 probably_damaging(0.946) TCGA-MA-AA3Y-01 19 44536955 44536955 G C ZNF222 Missense_Mutation p.K416N 0.14 deleterious(0) probably_damaging(0.997) TCGA-MA-AA3Y-01 19 47870307 47870307 G C DHX34 Missense_Mutation p.E555Q 0.21 tolerated(0.11) benign(0.043) TCGA-MA-AA3Y-01 19 52033716 52033716 G A SIGLEC6 Silent p.I243I 0.26 TCGA-MA-AA3Y-01 19 53958630 53958630 G C ZNF761 RNA 0.16 TCGA-MA-AA3Y-01 19 54682572 54682572 C T MBOAT7 Missense_Mutation p.R314H 0.22 deleterious(0) probably_damaging(0.996) TCGA-MA-AA3Y-01 19 57647388 57647388 G C ZIM3 Nonsense_Mutation p.S106* 0.22 TCGA-MA-AA3Y-01 19 58361656 58361656 G A CTD-2583A14.10 Intron 0.28 TCGA-MA-AA3Y-01 19 9086736 9086736 G A MUC16 Silent p.I1693I 0.20 TCGA-MA-AA3Y-01 19 9967548 9967548 G A OLFM2 Missense_Mutation p.R208W 0.16 deleterious(0) probably_damaging(0.987) TCGA-MA-AA3Y-01 1 100159970 100159970 G A PALMD 3'UTR 0.21 TCGA-MA-AA3Y-01 1 10659358 10659358 C T PEX14 Missense_Mutation p.S78L 0.28 tolerated(0.41) benign(0.004) TCGA-MA-AA3Y-01 1 119925608 119925608 G C HAO2 Missense_Mutation p.E68Q 0.21 tolerated(0.23) benign(0.005) TCGA-MA-AA3Y-01 1 144882713 144882713 G A PDE4DIP Silent p.F1102F 0.07 TCGA-MA-AA3Y-01 1 150782911 150782911 G C ARNT 3'UTR 0.25 TCGA-MA-AA3Y-01 1 151264072 151264072 G C ZNF687 3'UTR 0.29 TCGA-MA-AA3Y-01 1 155747437 155747437 C G GON4L Missense_Mutation p.K689N 0.15 tolerated(0.12) benign(0.265) TCGA-MA-AA3Y-01 1 156045362 156045362 G C MEX3A 3'UTR 0.26 TCGA-MA-AA3Y-01 1 157490941 157490941 C A FCRL5 Missense_Mutation p.G794V 0.23 tolerated(0.09) probably_damaging(0.991) TCGA-MA-AA3Y-01 1 157545313 157545313 C G FCRL4 3'UTR 0.21 TCGA-MA-AA3Y-01 1 157545325 157545325 C T FCRL4 Missense_Mutation p.E513K 0.25 deleterious_low_confidence(0.04) benign(0.008) TCGA-MA-AA3Y-01 1 161647425 161647425 G A FCGR2B 3'UTR 0.25 TCGA-MA-AA3Y-01 1 16563216 16563216 C T RSG1 Missense_Mutation p.G8S 0.13 deleterious(0.03) probably_damaging(0.951) TCGA-MA-AA3Y-01 1 1688188 1688188 C G NADK Intron 0.27 TCGA-MA-AA3Y-01 1 179380341 179380341 G C AXDND1 Missense_Mutation p.M390I 0.16 tolerated(1) benign(0) TCGA-MA-AA3Y-01 1 183093830 183093830 G C LAMC1 Silent p.V822V 0.11 TCGA-MA-AA3Y-01 1 183093899 183093899 G C LAMC1 Missense_Mutation p.L845F 0.20 tolerated(0.28) benign(0.07) TCGA-MA-AA3Y-01 1 200571070 200571070 G A KIF14 Silent p.V702V 0.23 TCGA-MA-AA3Y-01 1 202992345 202992345 G C TMEM183A 3'UTR 0.09 TCGA-MA-AA3Y-01 1 204002125 204002125 G C LINC00303 RNA 0.30 TCGA-MA-AA3Y-01 1 206785777 206785777 C T EIF2D 5'UTR 0.27 TCGA-MA-AA3Y-01 1 207222210 207222210 C G YOD1 3'UTR 0.20 TCGA-MA-AA3Y-01 1 212859897 212859897 G A BATF3 3'UTR 0.23 TCGA-MA-AA3Y-01 1 214813619 214813619 C A CENPF Missense_Mutation p.H646Q 0.15 benign(0.037) TCGA-MA-AA3Y-01 1 218520281 218520281 G T TGFB2 Nonsense_Mutation p.E80* 0.20 TCGA-MA-AA3Y-01 1 228248808 228248808 G T WNT3A 3'UTR 0.25 TCGA-MA-AA3Y-01 1 228248866 228248866 G A WNT3A 3'UTR 0.27 TCGA-MA-AA3Y-01 1 23419477 23419477 G A LUZP1 Silent p.F426F 0.31 TCGA-MA-AA3Y-01 1 235530847 235530847 C T TBCE Intron 0.18 TCGA-MA-AA3Y-01 1 24394848 24394848 T C MYOM3 Missense_Mutation p.I1054V 0.27 deleterious(0.03) benign(0.155) TCGA-MA-AA3Y-01 1 26349868 26349868 C T EXTL1 Missense_Mutation p.S244F 0.29 deleterious(0.02) probably_damaging(0.963) TCGA-MA-AA3Y-01 1 27108043 27108043 G A ARID1A 3'UTR 0.22 TCGA-MA-AA3Y-01 1 3329139 3329139 C G PRDM16 Missense_Mutation p.S793W 0.17 deleterious(0.02) possibly_damaging(0.6) TCGA-MA-AA3Y-01 1 36023445 36023445 C T NCDN 5'UTR 0.36 TCGA-MA-AA3Y-01 1 38274729 38274729 G C C1orf122 Missense_Mutation p.G106A 0.20 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-MA-AA3Y-01 1 40713842 40713842 C G TMCO2 Missense_Mutation p.F59L 0.15 tolerated_low_confidence(0.09) possibly_damaging(0.682) TCGA-MA-AA3Y-01 1 44466508 44466508 C A SLC6A9 Missense_Mutation p.M562I 0.17 tolerated(0.07) probably_damaging(0.966) TCGA-MA-AA3Y-01 1 51001056 51001056 T A FAF1 Missense_Mutation p.E493D 0.21 tolerated(0.57) benign(0.018) TCGA-MA-AA3Y-01 1 54867531 54867531 C G SSBP3 Intron 0.21 TCGA-MA-AA3Y-01 1 6266326 6266326 C T RNF207 5'UTR 0.25 TCGA-MA-AA3Y-01 1 94079434 94079434 G C BCAR3 Intron 0.27 TCGA-MA-AA3Y-01 20 20180451 20180451 C A C20orf26 Missense_Mutation p.H613N 0.20 tolerated(0.54) benign(0.022) TCGA-MA-AA3Y-01 20 23586280 23586280 C G CST9 Silent p.L74L 0.22 TCGA-MA-AA3Y-01 20 33859511 33859511 C T MMP24 Silent p.F491F 0.25 TCGA-MA-AA3Y-01 20 48481345 48481345 C T SLC9A8 Silent p.L324L 0.22 TCGA-MA-AA3Y-01 21 39817388 39817388 G A ERG Nonsense_Mutation p.Q66* 0.19 TCGA-MA-AA3Y-01 21 41173510 41173510 C T IGSF5 3'UTR 0.23 TCGA-MA-AA3Y-01 21 46925830 46925830 G A COL18A1 Missense_Mutation p.E1236K 0.15 possibly_damaging(0.894) TCGA-MA-AA3Y-01 22 21998285 21998285 C T SDF2L1 Nonsense_Mutation p.Q163* 0.39 TCGA-MA-AA3Y-01 22 33257721 33257721 G A TIMP3 3'UTR 0.18 TCGA-MA-AA3Y-01 22 42091178 42091178 G C C22orf46 3'UTR 0.32 TCGA-MA-AA3Y-01 22 42091230 42091230 G C C22orf46 3'UTR 0.27 TCGA-MA-AA3Y-01 2 106739504 106739504 C T UXS1 Silent p.V227V 0.18 TCGA-MA-AA3Y-01 2 10942743 10942743 G A PDIA6 Silent p.L15L 0.29 TCGA-MA-AA3Y-01 2 112621473 112621473 C G ANAPC1 Splice_Site p.X278_splice 0.22 TCGA-MA-AA3Y-01 2 131459879 131459879 G C FAR2P3 RNA 0.19 TCGA-MA-AA3Y-01 2 131459888 131459888 A G FAR2P3 RNA 0.20 TCGA-MA-AA3Y-01 2 133540773 133540773 C A NCKAP5 Missense_Mutation p.G1204V 0.27 tolerated(0.18) benign(0.117) TCGA-MA-AA3Y-01 2 136598469 136598469 C T MCM6 Missense_Mutation p.G801E 0.16 tolerated(0.83) benign(0.001) TCGA-MA-AA3Y-01 2 141528453 141528453 G A LRP1B Nonsense_Mutation p.Q1875* 0.21 TCGA-MA-AA3Y-01 2 1480992 1480992 C T TPO Silent p.N318N 0.19 TCGA-MA-AA3Y-01 2 160255340 160255340 C T BAZ2B Silent p.K988K 0.15 TCGA-MA-AA3Y-01 2 167060530 167060530 C T SCN9A Missense_Mutation p.R1559K 0.27 deleterious(0.01) probably_damaging(0.994) TCGA-MA-AA3Y-01 2 219647077 219647077 G A CYP27A1 Missense_Mutation p.E58K 0.50 tolerated(0.2) benign(0.005) TCGA-MA-AA3Y-01 2 230668867 230668868 AA - TRIP12 Frame_Shift_Del p.F834Yfs*2 0.25 TCGA-MA-AA3Y-01 2 24927999 24927999 T C NCOA1 Silent p.L332L 0.25 TCGA-MA-AA3Y-01 2 31423488 31423488 G C CAPN14 Silent p.L185L 0.22 TCGA-MA-AA3Y-01 2 38408953 38408953 G A CYP1B1-AS1 RNA 0.26 TCGA-MA-AA3Y-01 2 70408456 70408456 C T C2orf42 Missense_Mutation p.R221H 0.11 tolerated(0.06) possibly_damaging(0.754) TCGA-MA-AA3Y-01 2 74445707 74445707 G C SLC4A5 3'Flank 0.38 TCGA-MA-AA3Y-01 3 100497193 100497193 C G ABI3BP Missense_Mutation p.R712T 0.25 deleterious(0.02) possibly_damaging(0.879) TCGA-MA-AA3Y-01 3 108118024 108118024 C T MYH15 Silent p.K1629K 0.19 TCGA-MA-AA3Y-01 3 115805256 115805256 C A LSAMP Silent p.V101V 0.27 TCGA-MA-AA3Y-01 3 11744483 11744483 G C VGLL4 Missense_Mutation p.S9C 0.19 deleterious(0.01) possibly_damaging(0.621) TCGA-MA-AA3Y-01 3 122646720 122646720 G A SEMA5B Missense_Mutation p.S310L 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-MA-AA3Y-01 3 125248886 125248886 C G OSBPL11 3'UTR 0.21 TCGA-MA-AA3Y-01 3 130287064 130287064 G C COL6A6 Missense_Mutation p.E673Q 0.23 deleterious(0) probably_damaging(0.993) TCGA-MA-AA3Y-01 3 132280061 132280061 C T ACAD11 Missense_Mutation p.E668K 0.21 tolerated(0.09) probably_damaging(0.91) TCGA-MA-AA3Y-01 3 141697367 141697367 C T TFDP2 Missense_Mutation p.D172N 0.13 tolerated(0.09) possibly_damaging(0.569) TCGA-MA-AA3Y-01 3 160474052 160474052 C T PPM1L 5'UTR 0.28 TCGA-MA-AA3Y-01 3 183226289 183226289 C T KLHL6 Missense_Mutation p.R156Q 0.18 tolerated(0.59) benign(0.092) TCGA-MA-AA3Y-01 3 195590283 195590283 G A TNK2 3'UTR 0.30 TCGA-MA-AA3Y-01 3 195590291 195590291 G C TNK2 3'UTR 0.27 TCGA-MA-AA3Y-01 3 45943020 45943020 C T CCR9 Missense_Mutation p.S247F 0.25 tolerated(0.11) benign(0.017) TCGA-MA-AA3Y-01 3 49049131 49049131 G A WDR6 Missense_Mutation p.R85Q 0.13 tolerated(0.37) benign(0.093) TCGA-MA-AA3Y-01 3 49397807 49397807 C T RHOA Silent p.V139V 0.22 TCGA-MA-AA3Y-01 3 50385211 50385211 C T NPRL2 Missense_Mutation p.D352N 0.26 deleterious(0) probably_damaging(0.996) TCGA-MA-AA3Y-01 3 75481996 75481996 G A RP11-803B1.8 5'Flank 0.10 TCGA-MA-AA3Y-01 3 9979339 9979339 G C CRELD1 Missense_Mutation p.E117D 0.23 deleterious(0) probably_damaging(0.972) TCGA-MA-AA3Y-01 4 100047879 100047879 C T ADH4 Nonsense_Mutation p.W328* 0.18 TCGA-MA-AA3Y-01 4 126370198 126370198 C A FAT4 Missense_Mutation p.S2676Y 0.21 possibly_damaging(0.74) TCGA-MA-AA3Y-01 4 151336682 151336682 G C LRBA Missense_Mutation p.L2379V 0.19 deleterious(0) probably_damaging(0.993) TCGA-MA-AA3Y-01 4 175412614 175412614 G C HPGD 3'UTR 0.19 TCGA-MA-AA3Y-01 4 183723517 183723517 G A TENM3 3'UTR 0.22 TCGA-MA-AA3Y-01 4 186544143 186544143 G A SORBS2 Missense_Mutation p.R910C 0.31 tolerated(0.18) benign(0.033) TCGA-MA-AA3Y-01 4 2065513 2065513 G A NAT8L Missense_Mutation p.D190N 0.24 tolerated(0.1) benign(0.115) TCGA-MA-AA3Y-01 4 52860529 52860529 C A LRRC66 3'UTR 0.29 TCGA-MA-AA3Y-01 4 75174899 75174899 G C EPGN Missense_Mutation p.A45P 0.15 deleterious(0.02) possibly_damaging(0.851) TCGA-MA-AA3Y-01 4 83719748 83719748 G A SCD5 5'UTR 0.24 TCGA-MA-AA3Y-01 4 88116523 88116523 G A KLHL8 Missense_Mutation p.L57F 0.20 deleterious(0) probably_damaging(0.995) TCGA-MA-AA3Y-01 5 118810155 118810155 G T HSD17B4 Missense_Mutation p.D119Y 0.23 deleterious(0) probably_damaging(1) TCGA-MA-AA3Y-01 5 126888000 126888000 G C PRRC1 3'UTR 0.18 TCGA-MA-AA3Y-01 5 137498958 137498958 G C BRD8 Missense_Mutation p.Q650E 0.11 tolerated(0.42) benign(0.346) TCGA-MA-AA3Y-01 5 140790029 140790029 C G PCDHGB6 Missense_Mutation p.L754V 0.21 tolerated(0.27) benign(0.117) TCGA-MA-AA3Y-01 5 156904661 156904661 C T ADAM19 3'UTR 0.22 TCGA-MA-AA3Y-01 5 35740104 35740104 G A SPEF2 Silent p.L1049L 0.18 TCGA-MA-AA3Y-01 5 68666951 68666951 C T RAD17 5'UTR 0.15 TCGA-MA-AA3Y-01 5 72178921 72178921 G C TNPO1 Missense_Mutation p.D338H 0.16 deleterious(0) probably_damaging(0.963) TCGA-MA-AA3Y-01 5 73109457 73109457 C T ARHGEF28 Intron 0.24 TCGA-MA-AA3Y-01 5 74323516 74323516 C T GCNT4 3'UTR 0.18 TCGA-MA-AA3Y-01 6 10410382 10410382 C T TFAP2A Missense_Mutation p.D78N 0.37 deleterious(0) probably_damaging(0.998) TCGA-MA-AA3Y-01 6 107390562 107390562 G C BEND3 Missense_Mutation p.I611M 0.12 deleterious(0.02) probably_damaging(0.964) TCGA-MA-AA3Y-01 6 109867199 109867199 G C AK9 Silent p.L1032L 0.26 TCGA-MA-AA3Y-01 6 114267270 114267271 GG - HDAC2 Frame_Shift_Del p.P295Ifs*13 0.18 TCGA-MA-AA3Y-01 6 143092299 143092299 G C HIVEP2 Missense_Mutation p.Q1193E 0.30 tolerated(0.41) benign(0.263) TCGA-MA-AA3Y-01 6 15501481 15501481 C T JARID2 Silent p.G763G 0.20 TCGA-MA-AA3Y-01 6 30679975 30679975 C G MDC1 Missense_Mutation p.E582Q 0.14 tolerated(0.1) probably_damaging(0.968) TCGA-MA-AA3Y-01 6 35544821 35544821 G A FKBP5 Missense_Mutation p.R406C 0.49 deleterious(0) possibly_damaging(0.745) TCGA-MA-AA3Y-01 6 39272268 39272268 C A KCNK17 Intron 0.36 TCGA-MA-AA3Y-01 6 44271947 44271947 C G AARS2 Missense_Mutation p.E660Q 0.33 deleterious(0) possibly_damaging(0.701) TCGA-MA-AA3Y-01 6 44272379 44272379 C T AARS2 Intron 0.36 TCGA-MA-AA3Y-01 6 76018474 76018474 G A FILIP1 Missense_Mutation p.S1192F 0.18 deleterious(0.02) probably_damaging(0.942) TCGA-MA-AA3Y-01 7 100682271 100682271 C T MUC17 Missense_Mutation p.T2525M 0.23 probably_damaging(0.99) TCGA-MA-AA3Y-01 7 139311466 139311466 G A HIPK2 Silent p.F500F 0.19 TCGA-MA-AA3Y-01 7 150649893 150649893 G T KCNH2 Missense_Mutation p.P393T 0.27 tolerated(0.06) probably_damaging(0.96) TCGA-MA-AA3Y-01 7 153754634 153754634 A G DPP6 Intron 0.22 TCGA-MA-AA3Y-01 7 155604778 155604778 G A SHH Silent p.V13V 0.22 TCGA-MA-AA3Y-01 7 158716381 158716381 G A WDR60 Silent p.L738L 0.21 TCGA-MA-AA3Y-01 7 2419953 2419953 G A EIF3B 3'UTR 0.23 TCGA-MA-AA3Y-01 7 2974227 2974227 G C CARD11 Missense_Mutation p.Q460E 0.13 tolerated(0.07) benign(0.254) TCGA-MA-AA3Y-01 7 30491984 30491984 C T NOD1 Missense_Mutation p.R350Q 0.23 deleterious(0.01) probably_damaging(0.925) TCGA-MA-AA3Y-01 7 30951788 30951788 G A AQP1 Silent p.Q88Q 0.21 TCGA-MA-AA3Y-01 7 44916355 44916355 G C PURB 3'UTR 0.13 TCGA-MA-AA3Y-01 7 73969520 73969520 G A GTF2IRD1 Missense_Mutation p.E677K 0.19 deleterious(0.01) benign(0.219) TCGA-MA-AA3Y-01 7 75141635 75141635 C T Y_RNA 3'Flank 0.20 TCGA-MA-AA3Y-01 7 77230116 77230116 C T PTPN12 Missense_Mutation p.H230Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-MA-AA3Y-01 7 82584382 82584382 C T PCLO Missense_Mutation p.D1963N 0.14 unknown(0) TCGA-MA-AA3Y-01 7 99752287 99752287 G C C7orf43 3'UTR 0.20 TCGA-MA-AA3Y-01 8 100515063 100515063 G C VPS13B Splice_Site p.X1348_splice 0.13 TCGA-MA-AA3Y-01 8 117858618 117858618 C G RAD21 3'UTR 0.11 TCGA-MA-AA3Y-01 8 119936925 119936925 C G TNFRSF11B Missense_Mutation p.L298F 0.24 deleterious(0.01) probably_damaging(1) TCGA-MA-AA3Y-01 8 124268302 124268302 C G ZHX1 5'UTR 0.21 TCGA-MA-AA3Y-01 8 124664399 124664399 C G KLHL38 Missense_Mutation p.K256N 0.21 tolerated(0.08) benign(0.008) TCGA-MA-AA3Y-01 8 124664651 124664651 C G KLHL38 Silent p.L172L 0.33 TCGA-MA-AA3Y-01 8 124664936 124664936 C G KLHL38 Silent p.L77L 0.21 TCGA-MA-AA3Y-01 8 139149396 139149396 G T FAM135B Missense_Mutation p.H1337N 0.18 deleterious(0.03) benign(0.062) TCGA-MA-AA3Y-01 8 144993105 144993105 C T PLEC Silent p.K3765K 0.23 TCGA-MA-AA3Y-01 8 145979602 145979602 C G ZNF251 Missense_Mutation p.E46D 0.19 deleterious(0.03) possibly_damaging(0.523) TCGA-MA-AA3Y-01 8 16921660 16921660 G A MICU3 Missense_Mutation p.R150H 0.30 tolerated(0.55) probably_damaging(0.972) TCGA-MA-AA3Y-01 8 26628164 26628164 G C ADRA1A Missense_Mutation p.F301L 0.25 tolerated(1) benign(0.002) TCGA-MA-AA3Y-01 8 75929151 75929151 C T CRISPLD1 Nonsense_Mutation p.Q302* 0.16 TCGA-MA-AA3Y-01 8 98827587 98827587 C T LAPTM4B Silent p.L172L 0.17 TCGA-MA-AA3Y-01 9 103054802 103054802 G A INVS Missense_Mutation p.E755K 0.27 tolerated_low_confidence(0.11) benign(0.088) TCGA-MA-AA3Y-01 9 106888991 106888991 G A SMC2 Missense_Mutation p.E841K 0.35 tolerated(0.84) benign(0.005) TCGA-MA-AA3Y-01 9 107526539 107526539 C T NIPSNAP3B Silent p.S6S 0.31 TCGA-MA-AA3Y-01 9 117853056 117853056 G A TNC Missense_Mutation p.S81L 0.13 tolerated(0.18) benign(0.001) TCGA-MA-AA3Y-01 9 13126727 13126727 G A MPDZ Silent p.L1503L 0.21 TCGA-MA-AA3Y-01 9 132903755 132903755 G T AL360004.1 3'UTR 0.36 TCGA-MA-AA3Y-01 9 132903829 132903829 G C AL360004.1 Missense_Mutation p.H185D 0.30 unknown(0) TCGA-MA-AA3Y-01 9 132904323 132904323 G A AL360004.1 Missense_Mutation p.S20L 0.21 unknown(0) TCGA-MA-AA3Y-01 9 132904327 132904327 G A AL360004.1 Missense_Mutation p.L19F 0.19 unknown(0) TCGA-MA-AA3Y-01 9 139407490 139407491 - AGTT NOTCH1 Nonsense_Mutation p.C817* 0.53 TCGA-MA-AA3Y-01 9 139926540 139926540 C T C9orf139 5'UTR 0.37 TCGA-MA-AA3Y-01 9 140325749 140325749 G T NOXA1 Nonsense_Mutation p.E254* 0.17 TCGA-MA-AA3Y-01 9 26994512 26994512 G C LRRC19 3'UTR 0.33 TCGA-MA-AA3Y-01 9 34977183 34977183 G A KIAA1045 Missense_Mutation p.R318Q 0.23 tolerated(0.62) benign(0.002) TCGA-MA-AA3Y-01 9 72897389 72897389 C T SMC5 Nonsense_Mutation p.R291* 0.28 TCGA-MA-AA3Y-01 X 100278580 100278580 G A TRMT2B Missense_Mutation p.S212F 0.24 deleterious(0) probably_damaging(0.996) TCGA-MA-AA3Y-01 X 100882525 100882525 G C ARMCX3 3'UTR 0.20 TCGA-MA-AA3Y-01 X 117814547 117814547 G C DOCK11 Missense_Mutation p.E1855Q 0.10 deleterious(0) probably_damaging(0.96) TCGA-MA-AA3Y-01 X 152825191 152825191 C T ATP2B3 Missense_Mutation p.S877F 0.15 deleterious(0) probably_damaging(0.954) TCGA-MA-AA3Y-01 X 153040793 153040793 G A PLXNB3 Missense_Mutation p.M1446I 0.27 deleterious(0.01) benign(0.248) TCGA-MA-AA3Y-01 X 24225957 24225957 G C ZFX Missense_Mutation p.E309Q 0.17 tolerated(0.08) benign(0.336) TCGA-MA-AA3Y-01 X 30269608 30269608 G A MAGEB1 Missense_Mutation p.R333K 0.27 tolerated(0.68) unknown(0) TCGA-MA-AA3Y-01 X 39911600 39911600 G A BCOR Missense_Mutation p.S1677F 0.21 deleterious(0) probably_damaging(0.988) TCGA-MA-AA3Y-01 X 46943944 46943944 G C RGN Missense_Mutation p.K97N 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-MA-AA3Y-01 X 48855707 48855707 G A GRIPAP1 Silent p.L38L 0.23 TCGA-MA-AA3Y-01 X 53586366 53586366 C T HUWE1 Missense_Mutation p.E2622K 0.17 benign(0.292) TCGA-MA-AA3Y-01 X 70523674 70523674 G A ITGB1BP2 Nonsense_Mutation p.W184* 0.24 TCGA-MA-AA3Z-01 10 102799260 102799260 G A SFXN3 Missense_Mutation p.S299N 0.16 tolerated(0.18) benign(0.02) TCGA-MA-AA3Z-01 10 118764738 118764738 G A KIAA1598 5'UTR 0.39 TCGA-MA-AA3Z-01 10 124598719 124598719 C T CUZD1 Missense_Mutation p.E88K 0.19 deleterious(0) probably_damaging(0.996) TCGA-MA-AA3Z-01 10 124605281 124605281 C T CUZD1 Missense_Mutation p.E27K 0.17 deleterious(0.04) benign(0.008) TCGA-MA-AA3Z-01 10 125805436 125805436 A C CHST15 Missense_Mutation p.L98R 0.35 deleterious(0) probably_damaging(1) TCGA-MA-AA3Z-01 10 131634152 131634152 G T EBF3 3'UTR 0.33 TCGA-MA-AA3Z-01 10 25890771 25890771 G T GPR158 3'UTR 0.21 TCGA-MA-AA3Z-01 10 3183941 3183941 G A PITRM1 Intron 0.30 TCGA-MA-AA3Z-01 10 33201042 33201042 C G ITGB1 Missense_Mutation p.G494R 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-MA-AA3Z-01 10 43312049 43312049 G A BMS1 Missense_Mutation p.E778K 0.35 deleterious(0.01) benign(0.004) TCGA-MA-AA3Z-01 10 48416423 48416423 C G GDF2 Missense_Mutation p.D91H 0.23 deleterious(0) probably_damaging(0.984) TCGA-MA-AA3Z-01 10 51465339 51465339 G C AGAP7 Missense_Mutation p.H373D 0.34 tolerated(0.1) possibly_damaging(0.636) TCGA-MA-AA3Z-01 10 5957451 5957451 C T FBXO18 Silent p.I545I 0.35 TCGA-MA-AA3Z-01 10 61822990 61822990 C G ANK3 Missense_Mutation p.L4158F 0.25 probably_damaging(0.998) TCGA-MA-AA3Z-01 10 71060541 71060541 G C HK1 Intron 0.20 TCGA-MA-AA3Z-01 10 73570322 73570322 G A CDH23 Missense_Mutation p.D785N 0.10 deleterious(0.04) benign(0.046) TCGA-MA-AA3Z-01 11 101857588 101857588 G A KIAA1377 Silent p.L1020L 0.31 TCGA-MA-AA3Z-01 11 102709937 102709937 C G MMP3 Missense_Mutation p.E325Q 0.14 tolerated(0.06) benign(0.065) TCGA-MA-AA3Z-01 11 130716919 130716919 C T RP11-890B15.2 RNA 0.28 TCGA-MA-AA3Z-01 11 1575661 1575661 G A DUSP8 3'UTR 0.46 TCGA-MA-AA3Z-01 11 1576211 1576211 G C DUSP8 3'UTR 0.40 TCGA-MA-AA3Z-01 11 22296241 22296241 G A ANO5 Missense_Mutation p.D788N 0.15 deleterious(0.02) probably_damaging(0.966) TCGA-MA-AA3Z-01 11 36599635 36599635 G A RAG1 3'UTR 0.43 TCGA-MA-AA3Z-01 11 58919880 58919880 G A FAM111A Missense_Mutation p.D247N 0.45 tolerated(0.14) benign(0.223) TCGA-MA-AA3Z-01 11 62393868 62393868 G C GANAB Missense_Mutation p.Q877E 0.22 tolerated(1) benign(0.001) TCGA-MA-AA3Z-01 11 67223871 67223871 G A CABP4 Missense_Mutation p.E167K 0.41 deleterious(0) probably_damaging(0.994) TCGA-MA-AA3Z-01 11 8715313 8715313 G A ST5 3'UTR 0.40 TCGA-MA-AA3Z-01 12 108128073 108128073 C G PRDM4 Missense_Mutation p.D774H 0.49 tolerated_low_confidence(0.11) benign(0.09) TCGA-MA-AA3Z-01 12 115112479 115112479 G A TBX3 Missense_Mutation p.R421W 0.10 deleterious(0) possibly_damaging(0.677) TCGA-MA-AA3Z-01 12 119957941 119957941 G A CCDC60 Silent p.L328L 0.19 TCGA-MA-AA3Z-01 12 124252206 124252206 C T DNAH10 Nonsense_Mutation p.Q29* 0.18 TCGA-MA-AA3Z-01 12 14923829 14923829 C G HIST4H4 Missense_Mutation p.E64Q 0.30 deleterious(0) possibly_damaging(0.735) TCGA-MA-AA3Z-01 12 28702914 28702914 G C CCDC91 3'UTR 0.09 TCGA-MA-AA3Z-01 12 54423467 54423467 C T HOXC6 Silent p.R143R 0.17 TCGA-MA-AA3Z-01 12 55886926 55886926 C T OR6C68 Silent p.F255F 0.35 TCGA-MA-AA3Z-01 12 62798126 62798126 G A USP15 Missense_Mutation p.E973K 0.17 tolerated_low_confidence(0.17) possibly_damaging(0.636) TCGA-MA-AA3Z-01 12 62799256 62799256 G A USP15 3'UTR 0.14 TCGA-MA-AA3Z-01 12 62986424 62986424 C T MON2 Silent p.I1683I 0.40 TCGA-MA-AA3Z-01 12 72316786 72316786 G A TBC1D15 Silent p.E626E 0.25 TCGA-MA-AA3Z-01 12 89992497 89992497 C T ATP2B1 Intron 0.28 TCGA-MA-AA3Z-01 12 96900802 96900802 C T C12orf55 Missense_Mutation p.H222Y 0.12 deleterious(0.04) possibly_damaging(0.674) TCGA-MA-AA3Z-01 13 27690694 27690694 C T USP12 Missense_Mutation p.E30K 0.30 tolerated(0.19) benign(0.011) TCGA-MA-AA3Z-01 13 39544487 39544487 T C STOML3 Silent p.G117G 0.37 TCGA-MA-AA3Z-01 13 42813827 42813827 C T DGKH 3'UTR 0.13 TCGA-MA-AA3Z-01 13 50205514 50205514 C T ARL11 3'UTR 0.20 TCGA-MA-AA3Z-01 13 76445355 76445355 C T C13orf45 Silent p.I31I 0.25 TCGA-MA-AA3Z-01 13 77901148 77901148 G A MYCBP2 5'Flank 0.37 TCGA-MA-AA3Z-01 13 99536093 99536093 G A DOCK9 Missense_Mutation p.H815Y 0.42 tolerated(0.13) probably_damaging(0.966) TCGA-MA-AA3Z-01 14 103406456 103406456 C T CDC42BPB Silent p.L1506L 0.39 TCGA-MA-AA3Z-01 14 103802389 103802389 A G EIF5 Missense_Mutation p.N30S 0.31 deleterious(0) probably_damaging(0.992) TCGA-MA-AA3Z-01 14 21270076 21270076 G A RNASE1 Missense_Mutation p.S51F 0.39 deleterious(0.01) benign(0.248) TCGA-MA-AA3Z-01 14 42360450 42360450 C T LRFN5 Intron 0.44 TCGA-MA-AA3Z-01 14 59797948 59797948 C T DAAM1 Missense_Mutation p.P528S 0.39 tolerated(0.12) unknown(0) TCGA-MA-AA3Z-01 14 60587987 60587987 T A PCNXL4 Nonsense_Mutation p.C438* 0.38 TCGA-MA-AA3Z-01 14 61788790 61788804 GCCCCCCGGGGCCGG CCCC PRKCH 5'UTR 0.46 TCGA-MA-AA3Z-01 14 69928356 69928357 - T SLC39A9 3'Flank 0.14 TCGA-MA-AA3Z-01 14 70633571 70633571 G A SLC8A3 Silent p.I523I 0.30 TCGA-MA-AA3Z-01 14 77767484 77767484 C T POMT2 Silent p.L255L 0.24 TCGA-MA-AA3Z-01 14 95669322 95669322 C T CLMN Silent p.E788E 0.24 TCGA-MA-AA3Z-01 14 95669405 95669405 C G CLMN Missense_Mutation p.E761Q 0.19 deleterious(0.01) possibly_damaging(0.649) TCGA-MA-AA3Z-01 15 102358506 102358506 G A OR4F15 Missense_Mutation p.M39I 0.33 tolerated_low_confidence(0.42) benign(0.002) TCGA-MA-AA3Z-01 15 34533534 34533534 C T SLC12A6 Missense_Mutation p.E723K 0.13 tolerated(0.11) possibly_damaging(0.685) TCGA-MA-AA3Z-01 15 40381264 40381264 C T BMF 3'UTR 0.33 TCGA-MA-AA3Z-01 15 40381325 40381325 C T BMF 3'UTR 0.37 TCGA-MA-AA3Z-01 15 40383696 40383696 C T BMF 3'UTR 0.60 TCGA-MA-AA3Z-01 15 44069308 44069308 C T ELL3 5'UTR 0.44 TCGA-MA-AA3Z-01 15 44393692 44393692 C G FRMD5 Intron 0.35 TCGA-MA-AA3Z-01 15 52897432 52897432 C T FAM214A Silent p.L786L 0.29 TCGA-MA-AA3Z-01 15 59381865 59381865 G T RNF111 Splice_Site p.X860_splice 0.24 TCGA-MA-AA3Z-01 15 69373444 69373444 G A LINC00277 RNA 0.26 TCGA-MA-AA3Z-01 15 72523494 72523494 G A PKM 5'UTR 0.22 TCGA-MA-AA3Z-01 15 74426335 74426335 G A ISLR2 Missense_Mutation p.E414K 0.30 tolerated(0.26) probably_damaging(0.981) TCGA-MA-AA3Z-01 15 75983030 75983030 C T CSPG4 Missense_Mutation p.D126N 0.29 deleterious(0) possibly_damaging(0.715) TCGA-MA-AA3Z-01 16 11154805 11154805 G A CLEC16A Missense_Mutation p.R681Q 0.08 tolerated(1) benign(0.003) TCGA-MA-AA3Z-01 16 17201655 17201655 C T XYLT1 3'UTR 0.53 TCGA-MA-AA3Z-01 16 21328388 21328388 G C CRYM-AS1 RNA 0.23 TCGA-MA-AA3Z-01 16 30134236 30134236 C T MAPK3 Intron 0.30 TCGA-MA-AA3Z-01 16 66430034 66430034 G C CDH5 Missense_Mutation p.E430D 0.32 tolerated(0.56) benign(0.008) TCGA-MA-AA3Z-01 17 10296417 10296417 C G MYH8 Missense_Mutation p.K1759N 0.05 deleterious(0) possibly_damaging(0.551) TCGA-MA-AA3Z-01 17 10545879 10545879 G A MYH3 Silent p.I581I 0.15 TCGA-MA-AA3Z-01 17 15207361 15207361 G A TEKT3 Silent p.L455L 0.18 TCGA-MA-AA3Z-01 17 19584855 19584855 G A SLC47A2 Silent p.I467I 0.11 TCGA-MA-AA3Z-01 17 27182148 27182148 T C ERAL1 Silent p.P32P 0.08 TCGA-MA-AA3Z-01 17 30668280 30668280 C G C17orf75 Missense_Mutation p.S55T 0.33 tolerated(0.12) benign(0.057) TCGA-MA-AA3Z-01 17 30668289 30668289 C T C17orf75 Missense_Mutation p.R52Q 0.33 tolerated(0.38) benign(0.007) TCGA-MA-AA3Z-01 17 36359009 36359009 C T RP11-1407O15.2 Missense_Mutation p.E228K 0.05 TCGA-MA-AA3Z-01 17 40265511 40265511 G A KAT2A 3'UTR 0.45 TCGA-MA-AA3Z-01 17 44590580 44590580 C T LRRC37A2 Missense_Mutation p.R168C 0.15 tolerated(0.05) benign(0.18) TCGA-MA-AA3Z-01 17 4545027 4545027 G A ALOX15 Intron 0.08 TCGA-MA-AA3Z-01 17 56573327 56573327 C T MTMR4 Missense_Mutation p.E726K 0.22 tolerated_low_confidence(0.33) benign(0.027) TCGA-MA-AA3Z-01 17 56573666 56573666 C T MTMR4 Missense_Mutation p.D613N 0.25 tolerated(1) benign(0.081) TCGA-MA-AA3Z-01 17 57474794 57474794 G A YPEL2 3'UTR 0.50 TCGA-MA-AA3Z-01 17 6941616 6941616 C T SLC16A13 Silent p.L163L 0.53 TCGA-MA-AA3Z-01 17 76415624 76415624 C T PGS1 Intron 0.37 TCGA-MA-AA3Z-01 17 7682662 7682662 C T DNAH2 Silent p.A1881A 0.40 TCGA-MA-AA3Z-01 17 76967562 76967562 G A LGALS3BP 3'UTR 0.29 TCGA-MA-AA3Z-01 17 80789663 80789663 G A ZNF750 Missense_Mutation p.S223L 0.37 deleterious(0) benign(0.288) TCGA-MA-AA3Z-01 17 80789890 80789890 G T ZNF750 Silent p.L147L 0.27 TCGA-MA-AA3Z-01 17 8411944 8411944 C T MYH10 Missense_Mutation p.E1048K 0.20 benign(0.442) TCGA-MA-AA3Z-01 18 3215070 3215070 G A MYOM1 Missense_Mutation p.S51F 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.45) TCGA-MA-AA3Z-01 18 47518693 47518693 T C MYO5B Missense_Mutation p.T241A 0.40 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3Z-01 18 47811159 47811159 C T CXXC1 Silent p.R321R 0.36 TCGA-MA-AA3Z-01 18 77917939 77917939 C T PARD6G Silent p.P282P 0.32 TCGA-MA-AA3Z-01 18 9522196 9522196 G C RALBP1 Missense_Mutation p.D248H 0.27 deleterious(0.01) possibly_damaging(0.906) TCGA-MA-AA3Z-01 19 11352869 11352869 C T DOCK6 Missense_Mutation p.D499N 0.09 deleterious(0) possibly_damaging(0.77) TCGA-MA-AA3Z-01 19 12758083 12758083 C T MAN2B1 Missense_Mutation p.E963K 0.39 tolerated(0.61) benign(0.028) TCGA-MA-AA3Z-01 19 14065419 14065419 C T DCAF15 Silent p.F104F 0.32 TCGA-MA-AA3Z-01 19 14682712 14682712 C A NDUFB7 Missense_Mutation p.R34L 0.42 deleterious(0.01) benign(0.273) TCGA-MA-AA3Z-01 19 15224705 15224705 C G SYDE1 Silent p.L713L 0.58 TCGA-MA-AA3Z-01 19 18368240 18368240 G A KIAA1683 Missense_Mutation p.S1285F 0.24 tolerated(0.68) benign(0.036) TCGA-MA-AA3Z-01 19 21950379 21950379 G C ZNF100 5'UTR 0.25 TCGA-MA-AA3Z-01 19 38103936 38103938 GAA - ZNF540 In_Frame_Del p.K586del 0.28 TCGA-MA-AA3Z-01 19 4054751 4054751 G T ZBTB7A Nonsense_Mutation p.Y160* 0.36 TCGA-MA-AA3Z-01 19 41251093 41251093 C T C19orf54 Missense_Mutation p.D112N 0.39 deleterious(0.05) possibly_damaging(0.857) TCGA-MA-AA3Z-01 19 45860777 45860777 G A ERCC2 Silent p.I444I 0.08 TCGA-MA-AA3Z-01 19 48281963 48281963 C G SEPW1 5'UTR 0.17 TCGA-MA-AA3Z-01 19 49206368 49206368 C A FUT2 Nonsense_Mutation p.S52* 0.40 TCGA-MA-AA3Z-01 19 49535326 49535326 C T CGB2 5'UTR 0.34 TCGA-MA-AA3Z-01 19 50436250 50436250 G A ATF5 Silent p.L250L 0.10 TCGA-MA-AA3Z-01 19 56160396 56160396 C T CCDC106 5'UTR 0.29 TCGA-MA-AA3Z-01 19 58084669 58084669 G A ZNF416 Silent p.I201I 0.13 TCGA-MA-AA3Z-01 19 7830511 7830511 C T CLEC4M Intron 0.07 TCGA-MA-AA3Z-01 19 8959668 8959668 G A MUC16 Silent p.N14488N 0.32 TCGA-MA-AA3Z-01 1 101006481 101006481 C G GPR88 3'UTR 0.32 TCGA-MA-AA3Z-01 1 11147911 11147911 G A EXOSC10 Silent p.L297L 0.40 TCGA-MA-AA3Z-01 1 118527314 118527314 G A SPAG17 Nonsense_Mutation p.Q1921* 0.06 TCGA-MA-AA3Z-01 1 1431104 1431104 G C ATAD3B Missense_Mutation p.W618C 0.10 deleterious_low_confidence(0) benign(0.122) TCGA-MA-AA3Z-01 1 156012025 156012025 C T UBQLN4 Missense_Mutation p.M423I 0.10 tolerated(0.48) benign(0.004) TCGA-MA-AA3Z-01 1 163038953 163038953 T C RGS4 Intron 0.31 TCGA-MA-AA3Z-01 1 170706310 170706311 - AT PRRX1 3'UTR 0.30 TCGA-MA-AA3Z-01 1 171556191 171556191 C G PRRC2C Missense_Mutation p.S2598C 0.27 probably_damaging(0.998) TCGA-MA-AA3Z-01 1 183079659 183079659 G A LAMC1 Silent p.K297K 0.10 TCGA-MA-AA3Z-01 1 187610808 187610808 C T ERVMER61-1 RNA 0.36 TCGA-MA-AA3Z-01 1 19430742 19430742 G A UBR4 Missense_Mutation p.S4246F 0.10 probably_damaging(0.962) TCGA-MA-AA3Z-01 1 196883752 196883752 T A CFHR4 Silent p.G435G 0.36 TCGA-MA-AA3Z-01 1 202245515 202245515 C T LGR6 Silent p.D170D 0.37 TCGA-MA-AA3Z-01 1 204226578 204226578 G A PLEKHA6 Missense_Mutation p.S476L 0.14 deleterious(0) probably_damaging(0.99) TCGA-MA-AA3Z-01 1 205277768 205277768 C T NUAK2 Missense_Mutation p.E149K 0.38 deleterious(0) probably_damaging(0.993) TCGA-MA-AA3Z-01 1 207639983 207639983 C T CR2 Silent p.L57L 0.07 TCGA-MA-AA3Z-01 1 21039967 21039967 C T KIF17 Missense_Mutation p.D154N 0.26 tolerated(0.07) benign(0.008) TCGA-MA-AA3Z-01 1 214818962 214818962 C T CENPF Nonsense_Mutation p.Q2017* 0.15 TCGA-MA-AA3Z-01 1 214819158 214819158 C T CENPF Missense_Mutation p.S2082L 0.21 benign(0.002) TCGA-MA-AA3Z-01 1 228646128 228646128 C T HIST3H2BB Missense_Mutation p.R100C 0.24 tolerated_low_confidence(0.08) benign(0.056) TCGA-MA-AA3Z-01 1 23689697 23689697 C T ZNF436 Missense_Mutation p.E60K 0.33 tolerated(0.21) benign(0.292) TCGA-MA-AA3Z-01 1 2421268 2421268 G A PLCH2 Missense_Mutation p.D466N 0.21 deleterious(0.02) possibly_damaging(0.828) TCGA-MA-AA3Z-01 1 26607917 26607917 C T UBXN11 3'Flank 0.61 TCGA-MA-AA3Z-01 1 26796312 26796312 C T DHDDS 3'UTR 0.20 TCGA-MA-AA3Z-01 1 26898745 26898745 C T RPS6KA1 Silent p.L645L 0.11 TCGA-MA-AA3Z-01 1 32264198 32264198 G T SPOCD1 Silent p.R625R 0.39 TCGA-MA-AA3Z-01 1 33960856 33960856 G A ZSCAN20 Missense_Mutation p.R971H 0.32 tolerated(0.11) probably_damaging(0.967) TCGA-MA-AA3Z-01 1 41626550 41626550 G T SCMH1 5'UTR 0.34 TCGA-MA-AA3Z-01 1 53099258 53099258 C G FAM159A Silent p.V31V 0.66 TCGA-MA-AA3Z-01 1 56990060 56990060 C T PPAP2B Missense_Mutation p.R155H 0.47 deleterious(0) probably_damaging(1) TCGA-MA-AA3Z-01 1 62675559 62675559 G A L1TD1 Missense_Mutation p.M371I 0.26 tolerated(0.22) unknown(0) TCGA-MA-AA3Z-01 1 63024744 63024744 C T DOCK7 Missense_Mutation p.E783K 0.08 deleterious(0) possibly_damaging(0.607) TCGA-MA-AA3Z-01 1 75171881 75171881 C T CRYZ 3'UTR 0.24 TCGA-MA-AA3Z-01 1 89616090 89616090 G C GBP7 Nonsense_Mutation p.S265* 0.34 TCGA-MA-AA3Z-01 1 89889893 89889893 G A GBP1P1 RNA 0.16 TCGA-MA-AA3Z-01 1 98039508 98039508 C T DPYD Missense_Mutation p.E383K 0.41 deleterious(0.03) benign(0.289) TCGA-MA-AA3Z-01 1 99358020 99358020 A C LPPR5 3'UTR 0.31 TCGA-MA-AA3Z-01 20 21346088 21346088 A T XRN2 Missense_Mutation p.E762V 0.08 tolerated(0.06) benign(0.022) TCGA-MA-AA3Z-01 20 31021611 31021611 A - ASXL1 Frame_Shift_Del p.K538Rfs*165 0.30 TCGA-MA-AA3Z-01 20 33337871 33337871 C T NCOA6 Silent p.Q709Q 0.20 TCGA-MA-AA3Z-01 20 34092057 34092057 C T CEP250 Missense_Mutation p.H1954Y 0.09 possibly_damaging(0.499) TCGA-MA-AA3Z-01 20 40161980 40161980 C T CHD6 Missense_Mutation p.G88E 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.703) TCGA-MA-AA3Z-01 20 45085323 45085323 G A ZNF663P RNA 0.39 TCGA-MA-AA3Z-01 20 45358000 45358000 G A SLC2A10 Missense_Mutation p.G474S 0.29 deleterious(0) probably_damaging(1) TCGA-MA-AA3Z-01 20 51872445 51872445 C A TSHZ2 Silent p.V816V 0.26 TCGA-MA-AA3Z-01 20 57290244 57290244 C T NPEPL1 Silent p.F478F 0.11 TCGA-MA-AA3Z-01 20 60963003 60963003 C T RPS21 Intron 0.13 TCGA-MA-AA3Z-01 20 61485466 61485466 G A TCFL5 Missense_Mutation p.P428S 0.17 deleterious(0) probably_damaging(1) TCGA-MA-AA3Z-01 20 61908572 61908572 G A ARFGAP1 Missense_Mutation p.E120K 0.41 deleterious(0.03) probably_damaging(0.942) TCGA-MA-AA3Z-01 20 746313 746313 C T SLC52A3 Missense_Mutation p.E36K 0.56 deleterious(0) probably_damaging(1) TCGA-MA-AA3Z-01 21 37618671 37618671 C A DOPEY2 Missense_Mutation p.Q1465K 0.41 tolerated(0.94) benign(0.062) TCGA-MA-AA3Z-01 22 18072421 18072421 G A SLC25A18 Missense_Mutation p.D266N 0.25 deleterious(0.02) benign(0.091) TCGA-MA-AA3Z-01 22 18075295 18075295 G A ATP6V1E1 3'UTR 0.36 TCGA-MA-AA3Z-01 22 24759312 24759312 G A SPECC1L Missense_Mutation p.V943M 0.38 tolerated(0.07) possibly_damaging(0.878) TCGA-MA-AA3Z-01 22 40719394 40719394 G A TNRC6B 3'UTR 0.46 TCGA-MA-AA3Z-01 22 50307106 50307106 G A ALG12 Silent p.I74I 0.36 TCGA-MA-AA3Z-01 2 103299840 103299840 C T SLC9A2 Silent p.F375F 0.42 TCGA-MA-AA3Z-01 2 131985875 131985875 G A POTEE Missense_Mutation p.E326K 0.23 tolerated_low_confidence(0.05) possibly_damaging(0.621) TCGA-MA-AA3Z-01 2 166237188 166237188 G A SCN2A Silent p.L1465L 0.21 TCGA-MA-AA3Z-01 2 167288839 167288839 C T SCN7A Missense_Mutation p.G861S 0.19 tolerated(0.84) benign(0.008) TCGA-MA-AA3Z-01 2 168108339 168108339 T A XIRP2 Missense_Mutation p.N3479K 0.35 benign(0.057) TCGA-MA-AA3Z-01 2 174086211 174086211 G T MLTK Intron 0.20 TCGA-MA-AA3Z-01 2 190620273 190620273 C A OSGEPL1 Missense_Mutation p.V79F 0.32 deleterious(0) benign(0.367) TCGA-MA-AA3Z-01 2 190620277 190620277 C T OSGEPL1 Silent p.G77G 0.32 TCGA-MA-AA3Z-01 2 197064698 197064698 C T HECW2 3'UTR 0.43 TCGA-MA-AA3Z-01 2 20818909 20818909 C T HS1BP3 Silent p.V339V 0.14 TCGA-MA-AA3Z-01 2 220080871 220080871 C T ABCB6 Nonsense_Mutation p.W334* 0.32 TCGA-MA-AA3Z-01 2 220082418 220082418 C G ABCB6 Missense_Mutation p.E221Q 0.17 tolerated(0.33) benign(0.16) TCGA-MA-AA3Z-01 2 242195679 242195679 G A HDLBP Missense_Mutation p.R265W 0.34 deleterious(0) possibly_damaging(0.882) TCGA-MA-AA3Z-01 2 26178517 26178517 C T KIF3C Missense_Mutation p.E555K 0.24 possibly_damaging(0.534) TCGA-MA-AA3Z-01 2 33624025 33624025 C T LTBP1 3'UTR 0.16 TCGA-MA-AA3Z-01 2 49381510 49381510 G C FSHR Nonsense_Mutation p.S16* 0.49 TCGA-MA-AA3Z-01 2 55408833 55408833 C G CLHC1 Missense_Mutation p.E352Q 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-MA-AA3Z-01 2 73170660 73170660 C T SFXN5 3'UTR 0.40 TCGA-MA-AA3Z-01 2 74691740 74691740 G A MOGS Silent p.L154L 0.17 TCGA-MA-AA3Z-01 2 8064159 8064159 G A LINC00298 RNA 0.21 TCGA-MA-AA3Z-01 2 84904258 84904258 C T DNAH6 Nonsense_Mutation p.Q2248* 0.49 TCGA-MA-AA3Z-01 3 110791119 110791119 G A PVRL3 Intron 0.12 TCGA-MA-AA3Z-01 3 113377422 113377422 G C KIAA2018 Missense_Mutation p.P1036R 0.24 benign(0.096) TCGA-MA-AA3Z-01 3 121980482 121980482 C T CASR Silent p.I200I 0.29 TCGA-MA-AA3Z-01 3 134197492 134197492 C T ANAPC13 Missense_Mutation p.M55I 0.35 tolerated(0.14) benign(0.004) TCGA-MA-AA3Z-01 3 15091630 15091630 G T MRPS25 3'UTR 0.29 TCGA-MA-AA3Z-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.37 deleterious(0.02) probably_damaging(0.959) TCGA-MA-AA3Z-01 3 183368323 183368323 G A KLHL24 Missense_Mutation p.R60H 0.34 deleterious(0) probably_damaging(0.998) TCGA-MA-AA3Z-01 3 184039688 184039688 C T EIF4G1 Missense_Mutation p.S446F 0.08 deleterious(0.04) benign(0.259) TCGA-MA-AA3Z-01 3 186953602 186953602 C T MASP1 Nonsense_Mutation p.W686* 0.19 TCGA-MA-AA3Z-01 3 193061794 193061794 G A ATP13A5 Missense_Mutation p.L289F 0.21 deleterious(0.01) probably_damaging(0.961) TCGA-MA-AA3Z-01 3 194118243 194118243 G A GP5 Missense_Mutation p.L257F 0.16 deleterious(0) probably_damaging(0.99) TCGA-MA-AA3Z-01 3 195245945 195245945 G C PPP1R2 Missense_Mutation p.H147Q 0.34 deleterious(0) probably_damaging(1) TCGA-MA-AA3Z-01 3 195686791 195686791 C G SDHAP1 3'Flank 0.15 TCGA-MA-AA3Z-01 3 195692316 195692316 T C SDHAP1 RNA 0.79 TCGA-MA-AA3Z-01 3 41291033 41291033 G C ULK4 Silent p.L1237L 0.18 TCGA-MA-AA3Z-01 3 47619161 47619161 C T CSPG5 Missense_Mutation p.D119N 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-MA-AA3Z-01 3 47629420 47629420 C T SMARCC1 3'UTR 0.47 TCGA-MA-AA3Z-01 3 47912483 47912483 G A MAP4 Silent p.P893P 0.43 TCGA-MA-AA3Z-01 3 48664443 48664443 G C SLC26A6 Missense_Mutation p.Q647E 0.29 tolerated(0.52) benign(0.014) TCGA-MA-AA3Z-01 3 52360167 52360167 G C DNAH1 Missense_Mutation p.E140Q 0.31 benign(0.001) TCGA-MA-AA3Z-01 3 52568573 52568573 C T NT5DC2 5'Flank 0.35 TCGA-MA-AA3Z-01 3 52740218 52740218 C G SPCS1 Missense_Mutation p.R53G 0.26 tolerated_low_confidence(0.2) benign(0.008) TCGA-MA-AA3Z-01 3 99509653 99509653 C G COL8A1 Missense_Mutation p.Q43E 0.06 deleterious_low_confidence(0.03) unknown(0) TCGA-MA-AA3Z-01 3 99514522 99514522 G C COL8A1 Missense_Mutation p.D593H 0.36 deleterious(0.03) probably_damaging(0.919) TCGA-MA-AA3Z-01 4 145916586 145916586 G C ANAPC10 Missense_Mutation p.S166C 0.40 tolerated(0.18) probably_damaging(0.912) TCGA-MA-AA3Z-01 4 153250867 153250867 G A FBXW7 Missense_Mutation p.S398F 0.28 deleterious(0) probably_damaging(1) TCGA-MA-AA3Z-01 4 42145655 42145655 G C BEND4 Missense_Mutation p.L282V 0.74 tolerated_low_confidence(0.13) probably_damaging(0.931) TCGA-MA-AA3Z-01 4 72316938 72316938 G A SLC4A4 Silent p.Q414Q 0.19 TCGA-MA-AA3Z-01 4 96075779 96075779 G T BMPR1B Missense_Mutation p.K518N 0.41 deleterious(0) probably_damaging(0.963) TCGA-MA-AA3Z-01 5 1293448 1293448 G A TERT Missense_Mutation p.A518V 0.15 tolerated(0.28) benign(0.14) TCGA-MA-AA3Z-01 5 1293953 1293953 G C TERT Missense_Mutation p.L350V 0.24 tolerated(0.05) possibly_damaging(0.844) TCGA-MA-AA3Z-01 5 140250862 140250862 C T PCDHA11 Missense_Mutation p.T725M 0.58 tolerated_low_confidence(0.07) benign(0.002) TCGA-MA-AA3Z-01 5 159679558 159679558 C G CCNJL 3'UTR 0.56 TCGA-MA-AA3Z-01 5 159679793 159679793 G A CCNJL 3'UTR 0.13 TCGA-MA-AA3Z-01 5 178460120 178460120 C G ZNF879 Missense_Mutation p.Q391E 0.13 tolerated(0.41) probably_damaging(0.993) TCGA-MA-AA3Z-01 5 21752106 21752106 C G CDH12 Missense_Mutation p.D709H 0.15 deleterious(0.02) possibly_damaging(0.89) TCGA-MA-AA3Z-01 5 33982383 33982383 G C SLC45A2 Missense_Mutation p.Q174E 0.19 tolerated(1) benign(0.004) TCGA-MA-AA3Z-01 5 49694874 49694874 C G EMB 3'UTR 0.49 TCGA-MA-AA3Z-01 5 95726729 95726729 G A PCSK1 3'UTR 0.16 TCGA-MA-AA3Z-01 6 107980200 107980200 C G SOBP 3'UTR 0.43 TCGA-MA-AA3Z-01 6 107980491 107980491 C A SOBP 3'UTR 0.41 TCGA-MA-AA3Z-01 6 109867093 109867093 C G AK9 Missense_Mutation p.E1068Q 0.36 deleterious(0.01) possibly_damaging(0.637) TCGA-MA-AA3Z-01 6 114270373 114270373 C T HDAC2 Missense_Mutation p.D231N 0.15 deleterious(0) probably_damaging(0.979) TCGA-MA-AA3Z-01 6 118638048 118638048 C G SLC35F1 3'UTR 0.19 TCGA-MA-AA3Z-01 6 144184415 144184415 G C LTV1 Missense_Mutation p.E437Q 0.11 tolerated(0.19) benign(0.292) TCGA-MA-AA3Z-01 6 159183198 159183198 C T SYTL3 Missense_Mutation p.S502L 0.09 deleterious(0.04) possibly_damaging(0.904) TCGA-MA-AA3Z-01 6 30640701 30640701 C G DHX16 5'UTR 0.21 TCGA-MA-AA3Z-01 6 55119937 55119937 G A HCRTR2 Missense_Mutation p.V136M 0.33 deleterious(0) probably_damaging(0.921) TCGA-MA-AA3Z-01 7 100421338 100421338 G A EPHB4 Silent p.V113V 0.14 TCGA-MA-AA3Z-01 7 107384522 107384522 C T CBLL1 5'UTR 0.45 TCGA-MA-AA3Z-01 7 112460260 112460260 C G C7orf60 3'UTR 0.39 TCGA-MA-AA3Z-01 7 134225804 134225804 C G AKR1B10 Missense_Mutation p.S305C 0.18 tolerated(0.06) benign(0.119) TCGA-MA-AA3Z-01 7 140269503 140269503 C G DENND2A Silent p.R494R 0.21 TCGA-MA-AA3Z-01 7 143453632 143453632 C T CTAGE6 Missense_Mutation p.E374K 0.08 deleterious(0.01) possibly_damaging(0.615) TCGA-MA-AA3Z-01 7 150325153 150325153 C T GIMAP6 Missense_Mutation p.R178Q 0.33 tolerated(0.15) benign(0.188) TCGA-MA-AA3Z-01 7 155255787 155255787 G A EN2 3'UTR 0.48 TCGA-MA-AA3Z-01 7 29724444 29724444 C T MIR550A3 5'Flank 0.19 TCGA-MA-AA3Z-01 7 29966093 29966093 G A SCRN1 Missense_Mutation p.A374V 0.48 tolerated(0.06) benign(0.26) TCGA-MA-AA3Z-01 7 34014364 34014364 G C BMPER Missense_Mutation p.E182Q 0.15 tolerated(0.1) benign(0.002) TCGA-MA-AA3Z-01 7 44247795 44247795 C G YKT6 Missense_Mutation p.L153V 0.33 deleterious(0.02) benign(0.015) TCGA-MA-AA3Z-01 7 4955633 4955633 C T MMD2 Intron 0.30 TCGA-MA-AA3Z-01 7 77648045 77648045 G A MAGI2 3'UTR 0.19 TCGA-MA-AA3Z-01 7 99227085 99227085 G A ZSCAN25 Silent p.R359R 0.08 TCGA-MA-AA3Z-01 7 99355757 99355757 C T CYP3A4 Silent p.%3D 0.34 TCGA-MA-AA3Z-01 7 99725369 99725369 G A MBLAC1 Silent p.S117S 0.38 TCGA-MA-AA3Z-01 8 101276396 101276396 T A RNF19A Missense_Mutation p.Y445F 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-MA-AA3Z-01 8 101522868 101522868 C G ANKRD46 Splice_Site p.X213_splice 0.16 TCGA-MA-AA3Z-01 8 18257976 18257976 G C NAT2 Missense_Mutation p.E155Q 0.09 tolerated(0.06) benign(0.029) TCGA-MA-AA3Z-01 8 39806717 39806717 A T IDO2 Silent p.A24A 0.38 TCGA-MA-AA3Z-01 8 77764458 77764458 G A ZFHX4 Missense_Mutation p.M1767I 0.17 benign(0.043) TCGA-MA-AA3Z-01 8 81431028 81431028 C G ZBTB10 Missense_Mutation p.L717V 0.30 tolerated(0.41) benign(0.002) TCGA-MA-AA3Z-01 8 8175939 8175939 C T SGK223 Missense_Mutation p.E1316K 0.23 probably_damaging(0.993) TCGA-MA-AA3Z-01 9 123858814 123858814 C G CNTRL Silent p.L198L 0.28 TCGA-MA-AA3Z-01 9 125681709 125681709 A G ZBTB26 Missense_Mutation p.S169P 0.43 tolerated(0.11) benign(0.003) TCGA-MA-AA3Z-01 9 125836686 125836686 C T RABGAP1 Silent p.I744I 0.43 TCGA-MA-AA3Z-01 9 139275785 139275785 G A SNAPC4 Silent p.L793L 0.28 TCGA-MA-AA3Z-01 9 19123601 19123601 C G PLIN2 Missense_Mutation p.E91Q 0.38 deleterious(0.03) probably_damaging(0.996) TCGA-MA-AA3Z-01 9 33111724 33111724 G C B4GALT1 3'UTR 0.14 TCGA-MA-AA3Z-01 9 35104719 35104719 G A FAM214B 3'UTR 0.50 TCGA-MA-AA3Z-01 9 77280436 77280436 C T RORB Missense_Mutation p.R309C 0.40 deleterious(0) probably_damaging(1) TCGA-MA-AA3Z-01 X 102631505 102631505 G A NGFRAP1 5'UTR 0.45 TCGA-MA-AA3Z-01 X 107431079 107431079 G A COL4A6 Missense_Mutation p.P590L 0.37 benign(0.23) TCGA-MA-AA3Z-01 X 11139028 11139028 G C HCCS Missense_Mutation p.E175Q 0.26 deleterious(0.03) possibly_damaging(0.742) TCGA-MA-AA3Z-01 X 118753958 118753958 G C SEPT6 Intron 0.32 TCGA-MA-AA3Z-01 X 123513009 123513009 C G TENM1 3'UTR 0.15 TCGA-MA-AA3Z-01 X 12735697 12735697 G C FRMPD4 Missense_Mutation p.E918Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-MA-AA3Z-01 X 129338334 129338334 G T ZNF280C 3'UTR 0.37 TCGA-MA-AA3Z-01 X 135961526 135961526 C T RBMX Missense_Mutation p.E21K 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-MA-AA3Z-01 X 152686336 152686336 C T ZFP92 Silent p.L167L 0.08 TCGA-MA-AA3Z-01 X 153629053 153629053 C G RPL10 Nonsense_Mutation p.S168* 0.25 TCGA-MA-AA3Z-01 X 27766506 27766506 G A DCAF8L2 Silent p.E498E 0.16 TCGA-MA-AA3Z-01 X 34961366 34961366 G C FAM47B Missense_Mutation p.D140H 0.20 deleterious(0) probably_damaging(0.991) TCGA-MA-AA3Z-01 X 35959484 35959484 G C CXorf22 Missense_Mutation p.E162D 0.10 deleterious(0.03) benign(0.324) TCGA-MA-AA3Z-01 X 41056665 41056665 G A USP9X Missense_Mutation p.E1428K 0.10 deleterious(0) probably_damaging(0.952) TCGA-MA-AA3Z-01 X 49071922 49071922 G T CACNA1F Missense_Mutation p.F1117L 0.26 deleterious(0) benign(0.293) TCGA-MA-AA3Z-01 X 70387229 70387229 G C NLGN3 Missense_Mutation p.D428H 0.25 tolerated(0.06) probably_damaging(0.987) TCGA-MA-AA3Z-01 X 77305012 77305012 G A ATP7A 3'UTR 0.34 TCGA-MA-AA3Z-01 X 86069827 86069827 G A DACH2 Silent p.R558R 0.23 TCGA-MA-AA3Z-01 X 96502816 96502816 A G DIAPH2 Missense_Mutation p.D941G 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-MA-AA41-01 10 107022110 107022110 C G SORCS3 Missense_Mutation p.I1155M 0.20 deleterious(0) possibly_damaging(0.866) TCGA-MA-AA41-01 10 111894570 111894570 C T ADD3 3'Flank 0.10 TCGA-MA-AA41-01 10 116046113 116046113 A G VWA2 Silent p.R471R 0.18 TCGA-MA-AA41-01 10 116055000 116055000 T C AFAP1L2 3'UTR 0.19 TCGA-MA-AA41-01 10 119308785 119308785 C T EMX2 3'UTR 0.16 TCGA-MA-AA41-01 10 12070895 12070895 C A UPF2 Nonsense_Mutation p.E332* 0.18 TCGA-MA-AA41-01 10 123239073 123239073 G A FGFR2 3'Flank 0.62 TCGA-MA-AA41-01 10 17085910 17085910 G A CUBN Missense_Mutation p.R1249C 0.29 deleterious(0.03) probably_damaging(0.954) TCGA-MA-AA41-01 10 17865341 17865341 C T MRC1L1 Silent p.I110I 0.37 TCGA-MA-AA41-01 10 47769329 47769329 C G AL603965.1 Silent p.L50L 0.06 TCGA-MA-AA41-01 10 61833069 61833069 C G ANK3 Missense_Mutation p.E2524Q 0.39 probably_damaging(0.968) TCGA-MA-AA41-01 10 70916779 70916779 G A VPS26A Silent p.K82K 0.31 TCGA-MA-AA41-01 10 71654334 71654334 G A COL13A1 Silent p.P201P 0.19 TCGA-MA-AA41-01 10 75530495 75530495 T C SEC24C Missense_Mutation p.L1028P 0.12 tolerated(0.05) possibly_damaging(0.88) TCGA-MA-AA41-01 10 7601805 7601806 - T ITIH5 3'UTR 0.39 TCGA-MA-AA41-01 10 76788528 76788528 G T KAT6B Nonsense_Mutation p.E1316* 0.22 TCGA-MA-AA41-01 10 89514268 89514268 C T ATAD1 3'UTR 0.48 TCGA-MA-AA41-01 10 89728033 89728033 C T PTEN 3'UTR 0.36 TCGA-MA-AA41-01 10 93624081 93624081 C G TNKS2 3'UTR 0.16 TCGA-MA-AA41-01 11 10527300 10527300 G C AMPD3 Missense_Mutation p.E734Q 0.39 tolerated(0.24) benign(0.035) TCGA-MA-AA41-01 11 108141862 108141862 G C ATM Silent p.L970L 0.22 TCGA-MA-AA41-01 11 112099333 112099333 G A PTS Missense_Mutation p.E34K 0.37 deleterious(0.04) benign(0.316) TCGA-MA-AA41-01 11 112104324 112104324 G C PTS 3'UTR 0.31 TCGA-MA-AA41-01 11 113295128 113295128 G C DRD2 Silent p.L82L 0.24 TCGA-MA-AA41-01 11 118065116 118065116 G C AMICA1 Missense_Mutation p.S370C 0.18 deleterious(0) possibly_damaging(0.87) TCGA-MA-AA41-01 11 122685065 122685065 G T UBASH3B 3'UTR 0.55 TCGA-MA-AA41-01 11 122955379 122955379 C T CLMP Missense_Mutation p.E77K 0.30 deleterious(0.05) probably_damaging(0.959) TCGA-MA-AA41-01 11 123065726 123065726 C G CLMP 5'UTR 0.31 TCGA-MA-AA41-01 11 125871664 125871664 G A CDON Missense_Mutation p.A703V 0.30 tolerated(0.3) benign(0.005) TCGA-MA-AA41-01 11 126208264 126208264 C T DCPS Silent p.L202L 0.13 TCGA-MA-AA41-01 11 1271892 1271892 G A MUC5B Silent p.P4594P 0.21 TCGA-MA-AA41-01 11 130275159 130275159 G A ADAMTS8 3'UTR 0.33 TCGA-MA-AA41-01 11 27018335 27018335 C T FIBIN 3'UTR 0.25 TCGA-MA-AA41-01 11 35016570 35016570 G A PDHX Missense_Mutation p.E453K 0.42 tolerated(0.08) benign(0.175) TCGA-MA-AA41-01 11 55135590 55135590 C G OR4A15 Missense_Mutation p.I77M 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.573) TCGA-MA-AA41-01 11 56043966 56043966 G A OR5T1 Missense_Mutation p.M284I 0.21 tolerated(0.08) benign(0.049) TCGA-MA-AA41-01 11 61081814 61081814 G C DDB1 Missense_Mutation p.L519V 0.50 deleterious(0.02) benign(0.084) TCGA-MA-AA41-01 11 61504758 61504758 C T DAGLA Silent p.L492L 0.34 TCGA-MA-AA41-01 11 62290243 62290243 C T AHNAK Silent p.L3882L 0.16 TCGA-MA-AA41-01 11 65124339 65124339 C T TIGD3 Nonsense_Mutation p.Q354* 0.18 TCGA-MA-AA41-01 11 65383829 65383829 C T PCNXL3 Missense_Mutation p.S16L 0.38 deleterious(0) possibly_damaging(0.602) TCGA-MA-AA41-01 11 67023986 67023986 C T KDM2A 3'UTR 0.23 TCGA-MA-AA41-01 11 73441840 73441840 G A RAB6A Silent p.F33F 0.28 TCGA-MA-AA41-01 11 8953751 8953751 G C C11orf16 Silent p.L35L 0.21 TCGA-MA-AA41-01 11 99932077 99932077 G A CNTN5 Missense_Mutation p.E372K 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-MA-AA41-01 12 101768654 101768654 G C UTP20 Missense_Mutation p.E2400D 0.14 tolerated(0.08) benign(0.012) TCGA-MA-AA41-01 12 102517757 102517757 C T PARPBP Silent p.L31L 0.15 TCGA-MA-AA41-01 12 102589825 102589825 C T PARPBP Missense_Mutation p.S499L 0.26 tolerated(0.48) possibly_damaging(0.843) TCGA-MA-AA41-01 12 102590366 102590366 C T PARPBP 3'UTR 0.30 TCGA-MA-AA41-01 12 102591323 102591323 C T PMCH Missense_Mutation p.E76K 0.34 tolerated(0.1) benign(0.008) TCGA-MA-AA41-01 12 102591389 102591389 C T PMCH Missense_Mutation p.A54T 0.38 tolerated(0.56) benign(0.024) TCGA-MA-AA41-01 12 104513385 104513385 C G NFYB 3'UTR 0.33 TCGA-MA-AA41-01 12 112622327 112622327 C T HECTD4 Missense_Mutation p.M3335I 0.27 benign(0.014) TCGA-MA-AA41-01 12 112622837 112622837 C T HECTD4 Silent p.K3165K 0.41 TCGA-MA-AA41-01 12 112622902 112622902 C T HECTD4 Missense_Mutation p.D3144N 0.41 possibly_damaging(0.889) TCGA-MA-AA41-01 12 118627796 118627796 C T TAOK3 Intron 0.35 TCGA-MA-AA41-01 12 121593948 121593948 G A P2RX7 Missense_Mutation p.E121K 0.47 deleterious(0) probably_damaging(0.937) TCGA-MA-AA41-01 12 124414931 124414931 C G DNAH10OS 3'UTR 0.28 TCGA-MA-AA41-01 12 13208632 13208632 C T KIAA1467 Missense_Mutation p.S62L 0.41 deleterious(0.01) possibly_damaging(0.742) TCGA-MA-AA41-01 12 133778990 133778990 G C ZNF268 Missense_Mutation p.E240Q 0.13 tolerated(0.74) benign(0.025) TCGA-MA-AA41-01 12 21453493 21453493 G A SLCO1A2 Silent p.I233I 0.47 TCGA-MA-AA41-01 12 2800378 2800378 G C CACNA1C 3'UTR 0.22 TCGA-MA-AA41-01 12 38714757 38714757 G C ALG10B Missense_Mutation p.L388F 0.29 tolerated(0.08) benign(0.443) TCGA-MA-AA41-01 12 40677743 40677743 G C LRRK2 Missense_Mutation p.D770H 0.15 tolerated(0.31) probably_damaging(0.98) TCGA-MA-AA41-01 12 40963566 40963566 C G MUC19 3'UTR 0.34 TCGA-MA-AA41-01 12 42854171 42854171 C T PRICKLE1 Missense_Mutation p.E646K 0.30 tolerated(0.76) benign(0.004) TCGA-MA-AA41-01 12 4410766 4410766 C G CCND2 3'UTR 0.13 TCGA-MA-AA41-01 12 45410337 45410337 G A DBX2 Missense_Mutation p.S251F 0.28 deleterious(0) probably_damaging(0.972) TCGA-MA-AA41-01 12 47172322 47172322 C G SLC38A4 Missense_Mutation p.D319H 0.38 tolerated(0.05) possibly_damaging(0.89) TCGA-MA-AA41-01 12 48545087 48545087 C T ASB8 Missense_Mutation p.G44E 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-MA-AA41-01 12 49412708 49412708 C G PRKAG1 5'Flank 0.31 TCGA-MA-AA41-01 12 5020811 5020811 C T KCNA1 Silent p.F89F 0.12 TCGA-MA-AA41-01 12 50349322 50349322 C T AQP2 Silent p.R249R 0.29 TCGA-MA-AA41-01 12 51873980 51873980 C T SLC4A8 Intron 0.33 TCGA-MA-AA41-01 12 53818164 53818164 G T AMHR2 Nonsense_Mutation p.E48* 0.33 TCGA-MA-AA41-01 12 53818641 53818641 G A AMHR2 Silent p.G127G 0.21 TCGA-MA-AA41-01 12 53880831 53880831 C T MAP3K12 Silent p.Q115Q 0.58 TCGA-MA-AA41-01 12 56602030 56602030 G A RNF41 Missense_Mutation p.R139C 0.22 deleterious(0) benign(0.039) TCGA-MA-AA41-01 12 57490537 57490537 C T STAT6 Missense_Mutation p.E788K 0.15 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-MA-AA41-01 12 57496193 57496193 C - STAT6 Frame_Shift_Del p.T465Pfs*73 0.31 TCGA-MA-AA41-01 12 64472893 64472893 C A SRGAP1 Missense_Mutation p.F440L 0.50 tolerated(0.26) benign(0.175) TCGA-MA-AA41-01 12 66357424 66357424 G A HMGA2 3'UTR 0.25 TCGA-MA-AA41-01 12 68719452 68719452 C G MDM1 Intron 0.38 TCGA-MA-AA41-01 12 69667055 69667055 C G CPSF6 3'UTR 0.47 TCGA-MA-AA41-01 12 71946932 71946932 G A LGR5 Missense_Mutation p.D170N 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-MA-AA41-01 12 7248963 7248963 C G C1RL 3'UTR 0.20 TCGA-MA-AA41-01 12 76791674 76791674 G A OSBPL8 Missense_Mutation p.R158C 0.25 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 12 78591111 78591111 G T NAV3 Missense_Mutation p.D2104Y 0.17 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 12 81110851 81110851 G C MYF5 Silent p.V3V 0.31 TCGA-MA-AA41-01 12 81283122 81283122 C A LIN7A Nonsense_Mutation p.E37* 0.20 TCGA-MA-AA41-01 12 8672916 8672916 C T CLEC4D Missense_Mutation p.T160M 0.45 deleterious(0.04) possibly_damaging(0.563) TCGA-MA-AA41-01 12 95887982 95887982 G C METAP2 Missense_Mutation p.M193I 0.40 deleterious(0) probably_damaging(0.986) TCGA-MA-AA41-01 12 96059619 96059619 C T NTN4 Missense_Mutation p.D573N 0.28 tolerated(1) benign(0.001) TCGA-MA-AA41-01 12 97150331 97150331 C G C12orf55 Missense_Mutation p.Q2646E 0.15 tolerated(0.09) benign(0.001) TCGA-MA-AA41-01 13 100196196 100196196 C T TM9SF2 Missense_Mutation p.S366L 0.23 deleterious(0.03) benign(0.232) TCGA-MA-AA41-01 13 107821288 107821288 G C FAM155A 3'UTR 0.36 TCGA-MA-AA41-01 13 108883340 108883340 G C ABHD13 3'UTR 0.17 TCGA-MA-AA41-01 13 110802030 110802030 C T COL4A1 3'UTR 0.07 TCGA-MA-AA41-01 13 111082292 111082292 G A COL4A2 Missense_Mutation p.D180N 0.19 benign(0.124) TCGA-MA-AA41-01 13 114623832 114623832 C T LINC00452 RNA 0.38 TCGA-MA-AA41-01 13 25840373 25840373 G C MTMR6 Nonsense_Mutation p.S119* 0.13 TCGA-MA-AA41-01 13 29007982 29007982 G A FLT1 Nonsense_Mutation p.Q263* 0.19 TCGA-MA-AA41-01 13 41507672 41507672 C G ELF1 Missense_Mutation p.E583D 0.33 deleterious_low_confidence(0.01) benign(0.003) TCGA-MA-AA41-01 13 41650193 41650193 G T WBP4 Missense_Mutation p.E192D 0.39 deleterious(0.02) possibly_damaging(0.614) TCGA-MA-AA41-01 13 41656971 41656971 G T WBP4 Missense_Mutation p.G351V 0.38 deleterious(0) probably_damaging(0.98) TCGA-MA-AA41-01 13 46549496 46549496 C T ZC3H13 Missense_Mutation p.R797Q 0.37 unknown(0) TCGA-MA-AA41-01 13 50587351 50587351 G C TRIM13 3'Flank 0.44 TCGA-MA-AA41-01 13 53073437 53073437 C T RP11-78J21.4 RNA 0.50 TCGA-MA-AA41-01 13 66877446 66877446 A G PCDH9 3'UTR 0.25 TCGA-MA-AA41-01 13 84453581 84453581 C G SLITRK1 Missense_Mutation p.D688H 0.25 deleterious(0.01) possibly_damaging(0.736) TCGA-MA-AA41-01 13 92345534 92345534 C T GPC5 Missense_Mutation p.S140L 0.20 tolerated(0.66) benign(0.426) TCGA-MA-AA41-01 14 103371705 103371705 G C TRAF3 Missense_Mutation p.E431Q 0.46 deleterious(0.01) probably_damaging(0.991) TCGA-MA-AA41-01 14 105407232 105407232 C G AHNAK2 Missense_Mutation p.M4852I 0.55 benign(0.239) TCGA-MA-AA41-01 14 106733234 106733234 G A IGHV1-24 Silent p.V87V 0.10 TCGA-MA-AA41-01 14 23594919 23594919 C T SLC7A8 3'UTR 0.10 TCGA-MA-AA41-01 14 23596207 23596207 C G SLC7A8 3'UTR 0.14 TCGA-MA-AA41-01 14 24438082 24438082 G T DHRS4 3'UTR 0.37 TCGA-MA-AA41-01 14 24841776 24841776 C G NFATC4 Silent p.V505V 0.50 TCGA-MA-AA41-01 14 31363222 31363222 C T STRN3 3'Flank 0.39 TCGA-MA-AA41-01 14 31363620 31363620 G A STRN3 3'Flank 0.17 TCGA-MA-AA41-01 14 34419818 34419818 G C EGLN3 Silent p.V47V 0.32 TCGA-MA-AA41-01 14 35002692 35002692 C A EAPP Missense_Mutation p.D104Y 0.18 deleterious(0) possibly_damaging(0.627) TCGA-MA-AA41-01 14 37050666 37050666 G A NKX2-8 Missense_Mutation p.S54L 0.27 deleterious(0.02) possibly_damaging(0.552) TCGA-MA-AA41-01 14 52735298 52735298 C T PTGDR Nonsense_Mutation p.Q256* 0.45 TCGA-MA-AA41-01 14 64937808 64937808 G C AKAP5 3'UTR 0.25 TCGA-MA-AA41-01 14 64938404 64938404 G A AKAP5 3'UTR 0.18 TCGA-MA-AA41-01 14 64938854 64938854 G C AKAP5 3'UTR 0.21 TCGA-MA-AA41-01 14 64939475 64939475 G A AKAP5 3'UTR 0.16 TCGA-MA-AA41-01 14 64939942 64939942 G C AKAP5 3'UTR 0.15 TCGA-MA-AA41-01 14 68048901 68048901 C G PLEKHH1 Missense_Mutation p.L1134V 0.36 deleterious(0.04) possibly_damaging(0.53) TCGA-MA-AA41-01 14 74975584 74975584 G A LTBP2 Nonsense_Mutation p.Q1159* 0.73 TCGA-MA-AA41-01 14 89212627 89212627 G A EML5 Missense_Mutation p.R120C 0.38 tolerated(0.11) benign(0.049) TCGA-MA-AA41-01 14 94046578 94046578 C T UNC79 Silent p.F662F 0.19 TCGA-MA-AA41-01 14 97031440 97031440 C G PAPOLA 3'UTR 0.45 TCGA-MA-AA41-01 15 101434290 101434290 G A ALDH1A3 Intron 0.31 TCGA-MA-AA41-01 15 25349873 25349873 G C SNHG14 RNA 0.28 TCGA-MA-AA41-01 15 26107990 26107990 C T ATP10A Missense_Mutation p.R85H 0.24 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 15 26866486 26866486 C T GABRB3 Missense_Mutation p.D146N 0.29 tolerated(0.14) probably_damaging(1) TCGA-MA-AA41-01 15 34656424 34656424 G A LPCAT4 Missense_Mutation p.R188W 0.22 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 15 40898639 40898639 G A CASC5 Missense_Mutation p.E42K 0.53 deleterious(0) possibly_damaging(0.864) TCGA-MA-AA41-01 15 41230261 41230261 C G DLL4 3'UTR 0.39 TCGA-MA-AA41-01 15 41231089 41231089 C G DLL4 3'UTR 0.38 TCGA-MA-AA41-01 15 41231102 41231102 C T DLL4 3'UTR 0.39 TCGA-MA-AA41-01 15 41350928 41350928 G C INO80 Missense_Mutation p.Q632E 0.17 deleterious(0) possibly_damaging(0.644) TCGA-MA-AA41-01 15 41862341 41862341 G T TYRO3 Nonsense_Mutation p.E457* 0.43 TCGA-MA-AA41-01 15 42003254 42003254 C T MGA Missense_Mutation p.H931Y 0.13 tolerated(0.78) benign(0.028) TCGA-MA-AA41-01 15 42452898 42452898 C T VPS39 3'UTR 0.38 TCGA-MA-AA41-01 15 59148760 59148760 A G FAM63B 3'UTR 0.75 TCGA-MA-AA41-01 15 62942286 62942286 C G TLN2 Missense_Mutation p.S47C 0.19 deleterious(0.01) benign(0.325) TCGA-MA-AA41-01 15 63632612 63632612 C T CA12 Missense_Mutation p.E208K 0.25 tolerated(0.18) benign(0.02) TCGA-MA-AA41-01 15 64506280 64506280 C T CSNK1G1 Missense_Mutation p.R163Q 0.19 deleterious(0) probably_damaging(0.938) TCGA-MA-AA41-01 15 64970501 64970501 G C ZNF609 Missense_Mutation p.E1197Q 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-MA-AA41-01 15 65491405 65491405 C G CILP Missense_Mutation p.E407Q 0.33 tolerated(0.26) possibly_damaging(0.464) TCGA-MA-AA41-01 15 67495891 67495891 C T AAGAB Missense_Mutation p.E289K 0.34 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 15 68582509 68582509 G A FEM1B Silent p.K271K 0.62 TCGA-MA-AA41-01 15 69706751 69706751 C T KIF23 5'UTR 0.50 TCGA-MA-AA41-01 15 70366887 70366887 C T TLE3 Silent p.L119L 0.31 TCGA-MA-AA41-01 15 85383327 85383327 G C ALPK3 Missense_Mutation p.E475Q 0.18 deleterious(0.01) possibly_damaging(0.864) TCGA-MA-AA41-01 15 97328388 97328388 C G SPATA8 3'UTR 0.21 TCGA-MA-AA41-01 16 10989545 10989545 C T CIITA Silent p.I73I 0.37 TCGA-MA-AA41-01 16 1254302 1254302 G A CACNA1H Silent p.Q765Q 0.30 TCGA-MA-AA41-01 16 15692840 15692840 C T KIAA0430 Missense_Mutation p.D1619N 0.38 tolerated(0.33) benign(0.003) TCGA-MA-AA41-01 16 1827073 1827073 G A SPSB3 3'UTR 0.11 TCGA-MA-AA41-01 16 2025921 2025921 C A TBL3 Nonsense_Mutation p.S367* 0.21 TCGA-MA-AA41-01 16 2227984 2227984 C T CASKIN1 3'UTR 0.11 TCGA-MA-AA41-01 16 2293182 2293182 C G ECI1 Missense_Mutation p.E203Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-MA-AA41-01 16 2373608 2373608 C T ABCA3 Missense_Mutation p.E177K 0.22 tolerated(0.35) benign(0.009) TCGA-MA-AA41-01 16 24166113 24166113 C T PRKCB Missense_Mutation p.R392W 0.26 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 16 2812362 2812362 G A SRRM2 Silent p.R611R 0.53 TCGA-MA-AA41-01 16 28840778 28840778 G A ATXN2L Silent p.V266V 0.13 TCGA-MA-AA41-01 16 29974810 29974810 C T TMEM219 Silent p.V85V 0.53 TCGA-MA-AA41-01 16 4513841 4513841 T A NMRAL1 Silent p.T180T 0.29 TCGA-MA-AA41-01 16 4625889 4625889 C T C16orf96 Missense_Mutation p.R470W 0.35 deleterious(0.01) possibly_damaging(0.835) TCGA-MA-AA41-01 16 4749108 4749108 C T ANKS3 Missense_Mutation p.D452N 0.15 deleterious(0.03) probably_damaging(0.966) TCGA-MA-AA41-01 16 53674976 53674976 G C RPGRIP1L Missense_Mutation p.S976C 0.43 deleterious(0) probably_damaging(0.99) TCGA-MA-AA41-01 16 57504959 57504959 G T POLR2C Missense_Mutation p.L252F 0.33 deleterious(0) probably_damaging(0.968) TCGA-MA-AA41-01 16 58550386 58550386 G C SETD6 Missense_Mutation p.E161Q 0.18 tolerated(0.05) benign(0.378) TCGA-MA-AA41-01 16 67221588 67221588 G A EXOC3L1 Silent p.L194L 0.29 TCGA-MA-AA41-01 16 67942591 67942591 G A PSKH1 5'UTR 0.50 TCGA-MA-AA41-01 16 71985542 71985542 C T PKD1L3 RNA 0.14 TCGA-MA-AA41-01 16 735495 735495 G A WDR24 Missense_Mutation p.S594F 0.18 deleterious(0.03) probably_damaging(0.968) TCGA-MA-AA41-01 16 84693417 84693417 G C KLHL36 Missense_Mutation p.D397H 0.30 deleterious(0.04) possibly_damaging(0.78) TCGA-MA-AA41-01 16 87799411 87799411 G T KLHDC4 Nonsense_Mutation p.S29* 0.18 TCGA-MA-AA41-01 16 88502870 88502870 C T ZNF469 Nonsense_Mutation p.R2970* 0.10 TCGA-MA-AA41-01 16 88786500 88786500 G A PIEZO1 Silent p.F2047F 0.42 TCGA-MA-AA41-01 16 8900200 8900200 C A PMM2 Missense_Mutation p.L95I 0.30 tolerated(0.19) benign(0.054) TCGA-MA-AA41-01 16 8953113 8953113 G A CARHSP1 Missense_Mutation p.R25W 0.35 tolerated(0.07) probably_damaging(0.93) TCGA-MA-AA41-01 17 10293783 10293783 G A MYH8 Silent p.I1934I 0.29 TCGA-MA-AA41-01 17 16055291 16055291 C G NCOR1 Missense_Mutation p.D271H 0.34 probably_damaging(0.999) TCGA-MA-AA41-01 17 1680707 1680707 C T SERPINF1 Silent p.F408F 0.50 TCGA-MA-AA41-01 17 17106095 17106095 C T PLD6 Missense_Mutation p.E249K 0.46 tolerated_low_confidence(0.96) benign(0.001) TCGA-MA-AA41-01 17 17106239 17106239 C G PLD6 Missense_Mutation p.E201Q 0.38 tolerated(0.08) probably_damaging(0.954) TCGA-MA-AA41-01 17 18140008 18140008 G A LLGL1 Silent p.Q480Q 0.44 TCGA-MA-AA41-01 17 19285370 19285370 C T MAPK7 Missense_Mutation p.S585F 0.36 deleterious(0.01) unknown(0) TCGA-MA-AA41-01 17 2592759 2592759 C G CLUH 3'UTR 0.13 TCGA-MA-AA41-01 17 2592987 2592987 G C CLUH 3'UTR 0.27 TCGA-MA-AA41-01 17 27067837 27067837 C G NEK8 Intron 0.60 TCGA-MA-AA41-01 17 36243607 36243607 C G YWHAEP7 RNA 0.37 TCGA-MA-AA41-01 17 3661144 3661144 G A ITGAE Silent p.I292I 0.22 TCGA-MA-AA41-01 17 36700142 36700142 C T SRCIN1 Silent p.A1111A 0.42 TCGA-MA-AA41-01 17 36981543 36981543 G C CWC25 5'UTR 0.57 TCGA-MA-AA41-01 17 39739600 39739600 G A KRT14 Silent p.L387L 0.37 TCGA-MA-AA41-01 17 39740142 39740142 C T KRT14 Missense_Mutation p.G266E 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-MA-AA41-01 17 40271318 40271318 C G KAT2A Missense_Mutation p.E340Q 0.32 deleterious(0.01) probably_damaging(0.933) TCGA-MA-AA41-01 17 40705822 40705822 C T HSD17B1 Silent p.F152F 0.32 TCGA-MA-AA41-01 17 40737150 40737150 C G FAM134C Missense_Mutation p.E240D 0.22 tolerated(0.64) benign(0.015) TCGA-MA-AA41-01 17 40847879 40847879 C T CNTNAP1 Silent p.L1111L 0.50 TCGA-MA-AA41-01 17 43367985 43367985 C G MAP3K14 RNA 0.18 TCGA-MA-AA41-01 17 44833347 44833347 C T NSF 3'UTR 0.23 TCGA-MA-AA41-01 17 45699480 45699480 C G NPEPPS 3'UTR 0.41 TCGA-MA-AA41-01 17 48263186 48263186 C T COL1A1 Missense_Mutation p.E1401K 0.18 unknown(0) TCGA-MA-AA41-01 17 56772353 56772353 C G RAD51C Silent p.L69L 0.15 TCGA-MA-AA41-01 17 57941209 57941209 C T TUBD1 Splice_Site p.X359_splice 0.09 TCGA-MA-AA41-01 17 58037519 58037519 G C RNFT1 Nonsense_Mutation p.S201* 0.31 TCGA-MA-AA41-01 17 59560255 59560255 C T TBX4 Intron 0.14 TCGA-MA-AA41-01 17 60464752 60464752 G C EFCAB3 Missense_Mutation p.K94N 0.13 deleterious(0.05) benign(0.017) TCGA-MA-AA41-01 17 62082714 62082714 G C ICAM2 Missense_Mutation p.F27L 0.10 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 17 62476485 62476485 C T POLG2 Missense_Mutation p.E405K 0.13 deleterious(0) possibly_damaging(0.856) TCGA-MA-AA41-01 17 62854903 62854903 G C LRRC37A3 Silent p.L1601L 0.09 TCGA-MA-AA41-01 17 6531969 6531969 C T KIAA0753 Silent p.L62L 0.31 TCGA-MA-AA41-01 17 71282314 71282314 G A CDC42EP4 Missense_Mutation p.S109L 0.13 deleterious(0) probably_damaging(0.996) TCGA-MA-AA41-01 17 71332809 71332809 C G SDK2 3'UTR 0.04 TCGA-MA-AA41-01 17 71346435 71346435 G C SDK2 Silent p.L1993L 0.10 TCGA-MA-AA41-01 17 73257857 73257857 C G GGA3 5'UTR 0.18 TCGA-MA-AA41-01 17 74075561 74075561 C T ZACN Nonsense_Mutation p.Q47* 0.20 TCGA-MA-AA41-01 17 74075572 74075572 C T ZACN Silent p.I50I 0.18 TCGA-MA-AA41-01 17 74075573 74075573 C T ZACN Nonsense_Mutation p.Q51* 0.18 TCGA-MA-AA41-01 17 8133962 8133962 C T CTC1 Missense_Mutation p.D893N 0.47 tolerated(0.5) benign(0.117) TCGA-MA-AA41-01 17 8134682 8134682 C G CTC1 Missense_Mutation p.E861Q 0.23 tolerated(0.44) probably_damaging(0.999) TCGA-MA-AA41-01 17 8135094 8135094 C G CTC1 Missense_Mutation p.E809Q 0.21 tolerated(0.2) probably_damaging(0.917) TCGA-MA-AA41-01 17 8192310 8192310 C T RANGRF Silent p.F38F 0.41 TCGA-MA-AA41-01 17 8660758 8660758 C T SPDYE4 Silent p.K54K 0.13 TCGA-MA-AA41-01 18 13072789 13072789 C A CEP192 Missense_Mutation p.S1795Y 0.15 deleterious(0) possibly_damaging(0.854) TCGA-MA-AA41-01 18 19405660 19405660 C T MIB1 Intron 0.53 TCGA-MA-AA41-01 18 28588253 28588253 C G DSC3 Missense_Mutation p.R501T 0.28 tolerated(0.09) benign(0.345) TCGA-MA-AA41-01 18 28711663 28711663 C A DSC1 Missense_Mutation p.G794V 0.48 deleterious(0.01) probably_damaging(0.987) TCGA-MA-AA41-01 18 2921558 2921558 G C LPIN2 Missense_Mutation p.F805L 0.41 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 18 43664510 43664510 G A ATP5A1 Missense_Mutation p.H514Y 0.65 tolerated_low_confidence(0.29) benign(0.041) TCGA-MA-AA41-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.42 deleterious(0.03) probably_damaging(1) TCGA-MA-AA41-01 18 56892941 56892941 C G GRP Missense_Mutation p.F119L 0.17 tolerated(0.34) benign(0.022) TCGA-MA-AA41-01 18 60506098 60506098 G A PHLPP1 Missense_Mutation p.D619N 0.29 deleterious(0.03) benign(0.444) TCGA-MA-AA41-01 18 61225678 61225678 C G SERPINB12 Intron 0.65 TCGA-MA-AA41-01 18 624984 624984 G T CLUL1 Missense_Mutation p.M125I 0.62 tolerated(0.06) benign(0.084) TCGA-MA-AA41-01 18 67816232 67816232 G A RTTN Silent p.L738L 0.12 TCGA-MA-AA41-01 18 8831661 8831661 G A SOGA2 3'UTR 0.33 TCGA-MA-AA41-01 18 8831954 8831954 G A SOGA2 3'UTR 0.33 TCGA-MA-AA41-01 18 9256029 9256029 C G ANKRD12 Missense_Mutation p.L922V 0.46 tolerated_low_confidence(0.32) benign(0.003) TCGA-MA-AA41-01 19 11663987 11663987 C G ELOF1 3'UTR 0.17 TCGA-MA-AA41-01 19 11664587 11664587 C G ELOF1 Missense_Mutation p.D76H 0.19 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 19 12125940 12125940 C T ZNF433 Missense_Mutation p.G581E 0.25 tolerated(1) benign(0.002) TCGA-MA-AA41-01 19 12996163 12996163 G T KLF1 Missense_Mutation p.S294Y 0.36 deleterious(0) probably_damaging(0.979) TCGA-MA-AA41-01 19 13084274 13084274 C G DAND5 Silent p.L132L 0.43 TCGA-MA-AA41-01 19 14183884 14183884 C T hsa-mir-1199 Silent p.L63L 0.38 TCGA-MA-AA41-01 19 14263426 14263426 C T LPHN1 Splice_Site p.X1147_splice 0.25 TCGA-MA-AA41-01 19 14520755 14520755 C T DDX39A Intron 0.29 TCGA-MA-AA41-01 19 15225354 15225354 G A SYDE1 3'UTR 0.23 TCGA-MA-AA41-01 19 16686322 16686322 G C MED26 3'UTR 0.50 TCGA-MA-AA41-01 19 16686579 16686579 G A MED26 3'UTR 0.32 TCGA-MA-AA41-01 19 16910706 16910706 C G NWD1 Missense_Mutation p.L1157V 0.50 tolerated(0.17) benign(0.263) TCGA-MA-AA41-01 19 16918813 16918813 G C NWD1 Missense_Mutation p.E1385Q 0.31 tolerated(0.07) possibly_damaging(0.511) TCGA-MA-AA41-01 19 18965722 18965722 G T UPF1 Nonsense_Mutation p.E434* 0.19 TCGA-MA-AA41-01 19 18966864 18966864 C G UPF1 Missense_Mutation p.L559V 0.42 deleterious(0) possibly_damaging(0.9) TCGA-MA-AA41-01 19 19746350 19746350 C A GMIP Silent p.L478L 0.45 TCGA-MA-AA41-01 19 20806811 20806811 C A ZNF626 3'UTR 0.21 TCGA-MA-AA41-01 19 22939871 22939871 A G ZNF99 3'Flank 0.38 TCGA-MA-AA41-01 19 33246927 33246927 G C TDRD12 Missense_Mutation p.K204N 0.28 deleterious(0) probably_damaging(0.997) TCGA-MA-AA41-01 19 35646498 35646498 G C FXYD5 Silent p.L15L 0.13 TCGA-MA-AA41-01 19 37119355 37119355 C G ZNF382 3'UTR 0.26 TCGA-MA-AA41-01 19 37903627 37903627 G C ZNF569 Missense_Mutation p.Q645E 0.54 tolerated(0.64) probably_damaging(0.975) TCGA-MA-AA41-01 19 4318896 4318896 C G FSD1 Silent p.P329P 0.24 TCGA-MA-AA41-01 19 43586782 43586782 G A PSG2 5'UTR 0.44 TCGA-MA-AA41-01 19 44470391 44470391 G A ZNF221 Missense_Mutation p.R246K 0.26 tolerated(0.56) benign(0.04) TCGA-MA-AA41-01 19 45493657 45493657 C G CLPTM1 Missense_Mutation p.I379M 0.31 deleterious(0.01) probably_damaging(0.947) TCGA-MA-AA41-01 19 46295607 46295607 G C DMWD Missense_Mutation p.F136L 0.26 tolerated(0.07) possibly_damaging(0.483) TCGA-MA-AA41-01 19 51728840 51728840 C G CD33 Missense_Mutation p.S135C 0.29 tolerated(0.06) probably_damaging(0.996) TCGA-MA-AA41-01 19 52091400 52091400 C G ZNF175 Missense_Mutation p.Q606E 0.24 deleterious(0.01) benign(0.151) TCGA-MA-AA41-01 19 53209989 53209989 C G ZNF611 Missense_Mutation p.E107Q 0.12 tolerated(1) benign(0.007) TCGA-MA-AA41-01 19 53958966 53958966 G A ZNF761 RNA 0.10 TCGA-MA-AA41-01 19 53994984 53994984 T A ZNF813 Missense_Mutation p.C500S 0.12 deleterious(0) probably_damaging(0.955) TCGA-MA-AA41-01 19 54072618 54072618 C A ZNF331 5'UTR 0.18 TCGA-MA-AA41-01 19 54745002 54745002 G A LILRA6 Silent p.G220G 0.07 TCGA-MA-AA41-01 19 54778622 54778622 C A LILRB2 Missense_Mutation p.R571I 0.40 deleterious(0) possibly_damaging(0.736) TCGA-MA-AA41-01 19 55645511 55645511 C T TNNT1 Missense_Mutation p.E225K 0.50 deleterious(0) probably_damaging(0.93) TCGA-MA-AA41-01 19 55758503 55758503 C T PPP6R1 Intron 0.25 TCGA-MA-AA41-01 19 55857947 55857947 G A SUV420H2 Missense_Mutation p.E263K 0.15 deleterious(0) benign(0.343) TCGA-MA-AA41-01 19 56012464 56012464 C G SSC5D Missense_Mutation p.A894G 0.19 possibly_damaging(0.783) TCGA-MA-AA41-01 19 56369884 56369884 C T NLRP4 Silent p.F375F 0.41 TCGA-MA-AA41-01 19 57334987 57334987 G T PEG3 Nonsense_Mutation p.S152* 0.18 TCGA-MA-AA41-01 19 57988770 57988770 C T ZNF772 5'UTR 0.17 TCGA-MA-AA41-01 19 581384 581384 G C BSG Missense_Mutation p.E288Q 0.21 tolerated(0.58) benign(0.014) TCGA-MA-AA41-01 19 58446548 58446548 G A ZNF418 5'UTR 0.44 TCGA-MA-AA41-01 19 7585539 7585539 C G ZNF358 Missense_Mutation p.L471V 0.45 deleterious_low_confidence(0.05) benign(0.036) TCGA-MA-AA41-01 19 8162293 8162293 C G FBN3 Missense_Mutation p.D1723H 0.24 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 19 8389408 8389408 G A KANK3 Silent p.I769I 0.53 TCGA-MA-AA41-01 19 8578064 8578064 C T ZNF414 Silent p.V55V 0.44 TCGA-MA-AA41-01 19 8808202 8808202 C T ACTL9 Missense_Mutation p.D284N 0.24 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 19 9072144 9072144 G C MUC16 Nonsense_Mutation p.S5101* 0.20 TCGA-MA-AA41-01 19 9578847 9578847 G C ZNF560 Missense_Mutation p.S259C 0.33 deleterious(0.04) possibly_damaging(0.869) TCGA-MA-AA41-01 1 100154907 100154907 C T PALMD Missense_Mutation p.S364F 0.17 tolerated(0.61) benign(0.076) TCGA-MA-AA41-01 1 109103089 109103089 C G FAM102B Missense_Mutation p.F13L 0.08 tolerated(0.86) benign(0.002) TCGA-MA-AA41-01 1 111738644 111738644 G A DENND2D Missense_Mutation p.S180F 0.43 deleterious(0) probably_damaging(0.988) TCGA-MA-AA41-01 1 1149511 1149511 C T TNFRSF4 5'UTR 0.20 TCGA-MA-AA41-01 1 118598444 118598444 G C SPAG17 Missense_Mutation p.I878M 0.32 tolerated(0.1) benign(0.223) TCGA-MA-AA41-01 1 119619093 119619093 G C WARS2 Silent p.L76L 0.27 TCGA-MA-AA41-01 1 1247870 1247870 C A CPSF3L Nonsense_Mutation p.E478* 0.50 TCGA-MA-AA41-01 1 1248207 1248207 C T CPSF3L Silent p.K424K 0.33 TCGA-MA-AA41-01 1 1249115 1249115 C G CPSF3L Silent p.P324P 0.50 TCGA-MA-AA41-01 1 1289441 1289441 C G MXRA8 Missense_Mutation p.Q397H 0.34 tolerated(0.33) probably_damaging(0.986) TCGA-MA-AA41-01 1 145015895 145015895 G C RP11-326G21.1 5'Flank 0.06 TCGA-MA-AA41-01 1 145209118 145209118 C T RP11-458D21.5 5'Flank 0.03 TCGA-MA-AA41-01 1 145441950 145441950 C T TXNIP 3'UTR 0.45 TCGA-MA-AA41-01 1 145498121 145498121 C A LIX1L Missense_Mutation p.Q238K 0.66 deleterious(0.02) benign(0.062) TCGA-MA-AA41-01 1 150523153 150523153 G C AL356356.1 Missense_Mutation p.D28H 0.24 unknown(0) TCGA-MA-AA41-01 1 150523416 150523416 G A AL356356.1 Silent p.A115A 0.40 TCGA-MA-AA41-01 1 150524440 150524440 G C ADAMTSL4 Intron 0.38 TCGA-MA-AA41-01 1 151039890 151039890 G C MLLT11 Missense_Mutation p.D64H 0.14 deleterious(0) probably_damaging(0.944) TCGA-MA-AA41-01 1 151040089 151040089 G C MLLT11 3'UTR 0.07 TCGA-MA-AA41-01 1 151376737 151376737 G A POGZ 3'UTR 0.13 TCGA-MA-AA41-01 1 152083102 152083102 C G TCHH Missense_Mutation p.R864P 0.15 unknown(0) TCGA-MA-AA41-01 1 152283523 152283523 G C FLG Nonsense_Mutation p.S1280* 0.08 TCGA-MA-AA41-01 1 152760585 152760585 G A LCE1E 3'UTR 0.24 TCGA-MA-AA41-01 1 153362976 153362976 G A S100A8 Silent p.I12I 0.21 TCGA-MA-AA41-01 1 153723635 153723635 G A INTS3 Missense_Mutation p.V217M 0.30 tolerated(0.08) probably_damaging(0.982) TCGA-MA-AA41-01 1 154143934 154143934 C T TPM3 Silent p.K199K 0.27 TCGA-MA-AA41-01 1 154148616 154148616 C A TPM3 Nonsense_Mutation p.E118* 0.20 TCGA-MA-AA41-01 1 155217279 155217279 G C FAM189B 3'UTR 0.30 TCGA-MA-AA41-01 1 158065145 158065145 C G KIRREL 3'UTR 0.50 TCGA-MA-AA41-01 1 158224493 158224493 C T CD1A Missense_Mutation p.L12F 0.20 tolerated(0.26) unknown(0) TCGA-MA-AA41-01 1 159802909 159802909 C G SLAMF8 Missense_Mutation p.S204C 0.15 deleterious(0) probably_damaging(0.974) TCGA-MA-AA41-01 1 161133687 161133687 G A USP21 Silent p.L378L 0.09 TCGA-MA-AA41-01 1 162560218 162560218 G C UAP1 Missense_Mutation p.L425F 0.19 deleterious(0.01) probably_damaging(1) TCGA-MA-AA41-01 1 165414207 165414207 C A RXRG 5'UTR 0.27 TCGA-MA-AA41-01 1 167382296 167382296 G A POU2F1 Silent p.L645L 0.23 TCGA-MA-AA41-01 1 168007620 168007620 G A DCAF6 Missense_Mutation p.E541K 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.774) TCGA-MA-AA41-01 1 169670811 169670811 G A SELL Missense_Mutation p.S337L 0.14 deleterious(0.02) possibly_damaging(0.662) TCGA-MA-AA41-01 1 17084773 17084773 G A MST1L RNA 0.13 TCGA-MA-AA41-01 1 172410885 172410885 G A PIGC Missense_Mutation p.S293F 0.18 deleterious(0) probably_damaging(0.924) TCGA-MA-AA41-01 1 172526508 172526508 G C SUCO Missense_Mutation p.D178H 0.22 tolerated(0.17) benign(0.008) TCGA-MA-AA41-01 1 173494007 173494007 G T SLC9C2 Silent p.R809R 0.25 TCGA-MA-AA41-01 1 181764090 181764090 G C CACNA1E Missense_Mutation p.E2040Q 0.18 deleterious(0) possibly_damaging(0.775) TCGA-MA-AA41-01 1 182359869 182359869 G A GLUL 5'UTR 0.15 TCGA-MA-AA41-01 1 182360000 182360000 G A GLUL Intron 0.31 TCGA-MA-AA41-01 1 182850674 182850674 G A DHX9 Missense_Mutation p.E936K 0.10 deleterious(0.01) benign(0.149) TCGA-MA-AA41-01 1 185125882 185125882 G A TRMT1L 5'UTR 0.31 TCGA-MA-AA41-01 1 196973955 196973955 G A CFHR5 Missense_Mutation p.E499K 0.53 tolerated(0.18) probably_damaging(0.998) TCGA-MA-AA41-01 1 197008477 197008477 G A F13B 3'UTR 0.09 TCGA-MA-AA41-01 1 197063296 197063296 C G ASPM Missense_Mutation p.R3001T 0.16 deleterious(0.02) probably_damaging(0.954) TCGA-MA-AA41-01 1 197124018 197124018 A T ZBTB41 3'UTR 0.20 TCGA-MA-AA41-01 1 198222221 198222221 G C NEK7 Missense_Mutation p.E37Q 0.11 tolerated(0.29) benign(0.035) TCGA-MA-AA41-01 1 201104702 201104702 G A TMEM9 3'UTR 0.19 TCGA-MA-AA41-01 1 202287648 202287648 G A LGR6 Missense_Mutation p.M739I 0.18 deleterious(0.05) benign(0.026) TCGA-MA-AA41-01 1 202735529 202735529 G A KDM5B Intron 0.32 TCGA-MA-AA41-01 1 204425135 204425135 C G PIK3C2B Missense_Mutation p.E598Q 0.21 tolerated(0.14) possibly_damaging(0.791) TCGA-MA-AA41-01 1 204438459 204438459 G A PIK3C2B Missense_Mutation p.P158S 0.25 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-MA-AA41-01 1 204950931 204950931 G A NFASC Missense_Mutation p.M751I 0.15 deleterious(0.02) possibly_damaging(0.474) TCGA-MA-AA41-01 1 206241550 206241550 G C C1orf186 Missense_Mutation p.S80C 0.14 tolerated(0.19) possibly_damaging(0.855) TCGA-MA-AA41-01 1 207131734 207131734 G A FCAMR 3'UTR 0.33 TCGA-MA-AA41-01 1 207251036 207251036 C A PFKFB2 3'UTR 0.38 TCGA-MA-AA41-01 1 2075960 2075960 G C PRKCZ Intron 0.26 TCGA-MA-AA41-01 1 207753891 207753891 C G CR1 Missense_Mutation p.H1717D 0.19 deleterious(0.03) possibly_damaging(0.624) TCGA-MA-AA41-01 1 210415300 210415300 C T SERTAD4 Missense_Mutation p.S230F 0.34 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-MA-AA41-01 1 216138665 216138665 C T USH2A Missense_Mutation p.D2372N 0.63 benign(0.008) TCGA-MA-AA41-01 1 224002017 224002017 G C TP53BP2 Missense_Mutation p.L72V 0.11 deleterious(0) benign(0.341) TCGA-MA-AA41-01 1 226108121 226108121 A C PYCR2 3'UTR 0.21 TCGA-MA-AA41-01 1 227335089 227335089 C G CDC42BPA Missense_Mutation p.E289Q 0.17 deleterious(0) probably_damaging(0.983) TCGA-MA-AA41-01 1 229729954 229729954 C T TAF5L 3'UTR 0.18 TCGA-MA-AA41-01 1 230914773 230914773 C T CAPN9 Silent p.L336L 0.34 TCGA-MA-AA41-01 1 230916420 230916420 C G CAPN9 Missense_Mutation p.L483V 0.07 tolerated(0.09) possibly_damaging(0.498) TCGA-MA-AA41-01 1 231114978 231114978 G C ARV1 Missense_Mutation p.E43Q 0.36 tolerated(0.08) possibly_damaging(0.896) TCGA-MA-AA41-01 1 23398665 23398665 C T KDM1A Nonsense_Mutation p.Q533* 0.19 TCGA-MA-AA41-01 1 23414715 23414715 G A LUZP1 3'UTR 0.29 TCGA-MA-AA41-01 1 236749709 236749709 C G HEATR1 Missense_Mutation p.E587Q 0.13 tolerated(0.12) benign(0.197) TCGA-MA-AA41-01 1 23965631 23965631 G C MDS2 Missense_Mutation p.E12D 0.32 deleterious_low_confidence(0) benign(0.398) TCGA-MA-AA41-01 1 240637516 240637516 G A FMN2 3'UTR 0.32 TCGA-MA-AA41-01 1 242016700 242016700 C T EXO1 Missense_Mutation p.R108C 0.26 deleterious(0) probably_damaging(0.919) TCGA-MA-AA41-01 1 244219478 244219478 G C ZBTB18 3'UTR 0.13 TCGA-MA-AA41-01 1 24460830 24460830 C G IL22RA1 Silent p.S134S 0.27 TCGA-MA-AA41-01 1 246939451 246939451 C G RP11-439E19.10 3'Flank 0.42 TCGA-MA-AA41-01 1 27671927 27671927 C T SYTL1 Silent p.L34L 0.29 TCGA-MA-AA41-01 1 28559434 28559434 C T DNAJC8 Missense_Mutation p.E26K 0.19 deleterious(0) benign(0.283) TCGA-MA-AA41-01 1 29041350 29041350 C G GMEB1 3'UTR 0.40 TCGA-MA-AA41-01 1 29424343 29424343 G A EPB41 Missense_Mutation p.V737I 0.12 tolerated(0.17) probably_damaging(0.989) TCGA-MA-AA41-01 1 32266180 32266180 G A SPOCD1 Silent p.I488I 0.48 TCGA-MA-AA41-01 1 3379782 3379782 G C ARHGEF16 Missense_Mutation p.R45T 0.40 tolerated(0.33) benign(0.003) TCGA-MA-AA41-01 1 34663363 34663363 G A C1orf94 Silent p.L286L 0.31 TCGA-MA-AA41-01 1 34667772 34667772 C T C1orf94 Missense_Mutation p.S453L 0.44 deleterious(0) probably_damaging(0.951) TCGA-MA-AA41-01 1 3549971 3549971 C T WRAP73 Missense_Mutation p.E305K 0.24 tolerated(0.57) benign(0.001) TCGA-MA-AA41-01 1 43167916 43167916 G A YBX1 3'UTR 0.21 TCGA-MA-AA41-01 1 45805591 45805591 G C MUTYH Intron 0.14 TCGA-MA-AA41-01 1 46211908 46211908 C A IPP Missense_Mutation p.S59I 0.30 deleterious(0) probably_damaging(0.992) TCGA-MA-AA41-01 1 46508912 46508912 G T PIK3R3 3'UTR 0.36 TCGA-MA-AA41-01 1 53556427 53556427 G A SLC1A7 Silent p.I361I 0.50 TCGA-MA-AA41-01 1 53694555 53694555 G A MAGOH Silent p.V110V 0.40 TCGA-MA-AA41-01 1 55279507 55279507 G A C1orf177 Silent p.L261L 0.14 TCGA-MA-AA41-01 1 70716076 70716076 G A SRSF11 Missense_Mutation p.D383N 0.10 deleterious(0.02) unknown(0) TCGA-MA-AA41-01 1 71473032 71473032 G C PTGER3 Intron 0.23 TCGA-MA-AA41-01 1 75198883 75198883 G A CRYZ 5'UTR 0.36 TCGA-MA-AA41-01 1 78098348 78098348 G A ZZZ3 Missense_Mutation p.S231F 0.30 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-MA-AA41-01 1 7826690 7826690 C G CAMTA1 3'UTR 0.56 TCGA-MA-AA41-01 1 85417958 85417958 C G MCOLN2 Missense_Mutation p.E239Q 0.17 deleterious(0.02) probably_damaging(0.945) TCGA-MA-AA41-01 1 86172005 86172005 C T ZNHIT6 Silent p.L252L 0.32 TCGA-MA-AA41-01 1 87574628 87574628 C T HS2ST1 3'UTR 0.14 TCGA-MA-AA41-01 1 8926377 8926377 C T ENO1 Missense_Mutation p.E210K 0.28 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-MA-AA41-01 1 89579824 89579824 G A GBP2 Nonsense_Mutation p.Q342* 0.36 TCGA-MA-AA41-01 1 89586945 89586945 G C GBP2 Missense_Mutation p.L67V 0.10 tolerated(0.16) benign(0.302) TCGA-MA-AA41-01 1 91405233 91405233 C T ZNF644 Missense_Mutation p.D560N 0.25 tolerated(0.1) benign(0.012) TCGA-MA-AA41-01 1 92528769 92528769 C T EPHX4 Nonsense_Mutation p.Q339* 0.41 TCGA-MA-AA41-01 1 9307139 9307139 G A H6PD Missense_Mutation p.E248K 0.20 tolerated(1) benign(0.006) TCGA-MA-AA41-01 1 95448706 95448706 C T ALG14 Missense_Mutation p.D193N 0.20 deleterious(0.04) probably_damaging(0.951) TCGA-MA-AA41-01 1 97243300 97243300 C T PTBP2 Missense_Mutation p.H198Y 0.15 tolerated(0.37) benign(0.126) TCGA-MA-AA41-01 20 2378567 2378567 G C TGM6 Missense_Mutation p.E183Q 0.43 tolerated(0.23) benign(0.282) TCGA-MA-AA41-01 20 31811683 31811683 G C BPIFA3 Missense_Mutation p.R65T 0.24 tolerated(0.6) benign(0.113) TCGA-MA-AA41-01 20 3278727 3278727 C A C20orf194 Silent p.L626L 0.33 TCGA-MA-AA41-01 20 33026353 33026353 C G ITCH Missense_Mutation p.S240C 0.09 deleterious(0.04) probably_damaging(0.993) TCGA-MA-AA41-01 20 33147542 33147542 G A MAP1LC3A Missense_Mutation p.R73H 0.36 deleterious(0.01) possibly_damaging(0.818) TCGA-MA-AA41-01 20 33578549 33578549 C G MYH7B Silent p.L704L 0.28 TCGA-MA-AA41-01 20 33588247 33588247 G A MYH7B Missense_Mutation p.E1687K 0.52 possibly_damaging(0.803) TCGA-MA-AA41-01 20 35294792 35294792 C T NDRG3 Missense_Mutation p.E198K 0.28 deleterious(0) probably_damaging(0.95) TCGA-MA-AA41-01 20 37356649 37356649 C T SLC32A1 Silent p.F315F 0.26 TCGA-MA-AA41-01 20 411011 411011 C T RBCK1 Silent p.S490S 0.14 TCGA-MA-AA41-01 20 417197 417197 C G TBC1D20 3'UTR 0.24 TCGA-MA-AA41-01 20 42815076 42815076 G C JPH2 Missense_Mutation p.F90L 0.15 tolerated(0.09) possibly_damaging(0.462) TCGA-MA-AA41-01 20 44505511 44505511 C G ZSWIM3 Missense_Mutation p.S105C 0.23 deleterious(0.02) benign(0.395) TCGA-MA-AA41-01 20 61386124 61386124 C T NTSR1 Missense_Mutation p.R268C 0.29 deleterious(0.01) possibly_damaging(0.806) TCGA-MA-AA41-01 20 61536837 61536837 C T DIDO1 Intron 0.18 TCGA-MA-AA41-01 20 61951706 61951706 G A COL20A1 Missense_Mutation p.E1047K 0.33 deleterious(0.01) benign(0.269) TCGA-MA-AA41-01 20 62667733 62667733 G A ZNF512B Intron 0.32 TCGA-MA-AA41-01 20 62872235 62872235 C T MYT1 3'UTR 0.27 TCGA-MA-AA41-01 21 11020858 11020858 A C BAGE2 RNA 0.08 TCGA-MA-AA41-01 21 26960080 26960080 G C MRPL39 Missense_Mutation p.L331V 0.40 tolerated_low_confidence(0.4) benign(0) TCGA-MA-AA41-01 21 28210405 28210405 C G ADAMTS1 Missense_Mutation p.L799F 0.36 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 21 33371082 33371082 C T HUNK Missense_Mutation p.S577F 0.21 deleterious_low_confidence(0) possibly_damaging(0.553) TCGA-MA-AA41-01 21 43231148 43231148 C T PRDM15 Missense_Mutation p.E1179K 0.31 deleterious(0.03) possibly_damaging(0.521) TCGA-MA-AA41-01 21 43321749 43321749 G C C2CD2 Missense_Mutation p.I514M 0.33 deleterious(0) possibly_damaging(0.892) TCGA-MA-AA41-01 21 45223574 45223574 G C RRP1 Missense_Mutation p.R435S 0.23 deleterious_low_confidence(0.03) benign(0.006) TCGA-MA-AA41-01 21 45811478 45811478 C A TRPM2 Silent p.L588L 0.50 TCGA-MA-AA41-01 21 46067394 46067394 G A KRTAP10-11 3'UTR 0.36 TCGA-MA-AA41-01 21 46702293 46702293 C T POFUT2 Silent p.A203A 0.67 TCGA-MA-AA41-01 21 46957703 46957703 C T SLC19A1 Silent p.K57K 0.29 TCGA-MA-AA41-01 21 47570325 47570325 C T FTCD Missense_Mutation p.E251K 0.33 deleterious(0) probably_damaging(0.992) TCGA-MA-AA41-01 22 17579742 17579742 G C IL17RA Missense_Mutation p.E130Q 0.20 tolerated(0.06) benign(0.012) TCGA-MA-AA41-01 22 19754628 19754628 G A TBX1 3'UTR 0.11 TCGA-MA-AA41-01 22 23077533 23077533 G C IGLV2-18 Missense_Mutation p.E104Q 0.35 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-MA-AA41-01 22 24577539 24577539 G T SUSD2 Missense_Mutation p.G18C 0.48 deleterious_low_confidence(0.01) unknown(0) TCGA-MA-AA41-01 22 24648958 24648958 C G POM121L9P RNA 0.25 TCGA-MA-AA41-01 22 31302714 31302714 C G OSBP2 3'UTR 0.38 TCGA-MA-AA41-01 22 31673120 31673120 G A LIMK2 Silent p.K685K 0.44 TCGA-MA-AA41-01 22 31673232 31673232 G A LIMK2 3'UTR 0.48 TCGA-MA-AA41-01 22 31674314 31674314 G C LIMK2 3'Flank 0.32 TCGA-MA-AA41-01 22 31835386 31835386 C G EIF4ENIF1 3'UTR 0.17 TCGA-MA-AA41-01 22 31844190 31844190 G A EIF4ENIF1 Silent p.L599L 0.27 TCGA-MA-AA41-01 22 32108900 32108900 G C PRR14L Missense_Mutation p.S1642C 0.22 deleterious(0) probably_damaging(0.997) TCGA-MA-AA41-01 22 35691527 35691527 G A HMGXB4 3'UTR 0.15 TCGA-MA-AA41-01 22 41533746 41533746 G A EP300 Nonsense_Mutation p.W571* 0.11 TCGA-MA-AA41-01 22 42979803 42979803 C T POLDIP3 3'UTR 0.22 TCGA-MA-AA41-01 22 46505659 46505659 G C FLJ27365 Silent p.S84S 0.47 TCGA-MA-AA41-01 22 50705033 50705033 G C MAPK11 Missense_Mutation p.I206M 0.38 tolerated(0.09) possibly_damaging(0.851) TCGA-MA-AA41-01 22 51018680 51018680 C G CHKB Missense_Mutation p.E253Q 0.50 tolerated(0.29) benign(0.073) TCGA-MA-AA41-01 2 10198845 10198845 G C CYS1 3'UTR 0.19 TCGA-MA-AA41-01 2 102440431 102440431 G A MAP4K4 Silent p.K74K 0.41 TCGA-MA-AA41-01 2 112874512 112874512 C T TMEM87B 3'UTR 0.33 TCGA-MA-AA41-01 2 116572461 116572461 G T DPP10 Missense_Mutation p.R602I 0.18 deleterious(0.01) possibly_damaging(0.673) TCGA-MA-AA41-01 2 116594086 116594086 C T DPP10 Missense_Mutation p.S689L 0.20 deleterious(0) benign(0.413) TCGA-MA-AA41-01 2 116600825 116600825 G C DPP10 3'Flank 0.10 TCGA-MA-AA41-01 2 136622668 136622668 C T MCM6 Silent p.V331V 0.17 TCGA-MA-AA41-01 2 140990719 140990719 T A LRP1B 3'UTR 0.33 TCGA-MA-AA41-01 2 141245214 141245214 C G LRP1B Missense_Mutation p.R3072T 0.29 possibly_damaging(0.537) TCGA-MA-AA41-01 2 14776387 14776387 C T FAM84A 3'UTR 0.15 TCGA-MA-AA41-01 2 152657651 152657651 G A ARL5A 3'UTR 0.35 TCGA-MA-AA41-01 2 179579920 179579920 C G TTN Missense_Mutation p.E8665Q 0.09 TCGA-MA-AA41-01 2 186660324 186660324 G C FSIP2 Missense_Mutation p.E2910Q 0.24 probably_damaging(0.998) TCGA-MA-AA41-01 2 198270028 198270028 C T SF3B1 Missense_Mutation p.D470N 0.23 deleterious(0) benign(0.334) TCGA-MA-AA41-01 2 202565395 202565395 C T ALS2 3'UTR 0.26 TCGA-MA-AA41-01 2 202565497 202565497 C T ALS2 3'UTR 0.64 TCGA-MA-AA41-01 2 203424416 203424416 C T BMPR2 Intron 0.33 TCGA-MA-AA41-01 2 207146535 207146535 C G ZDBF2 5'UTR 0.43 TCGA-MA-AA41-01 2 20885488 20885488 C A C2orf43 3'UTR 0.38 TCGA-MA-AA41-01 2 210598550 210598550 C G MAP2 3'UTR 0.41 TCGA-MA-AA41-01 2 219146736 219146736 C T TMBIM1 Silent p.P43P 0.19 TCGA-MA-AA41-01 2 219269256 219269256 C G CTDSP1 3'UTR 0.30 TCGA-MA-AA41-01 2 219941005 219941005 C G NHEJ1 3'UTR 0.55 TCGA-MA-AA41-01 2 220432079 220432079 C T OBSL1 Missense_Mutation p.E585K 0.40 deleterious(0) probably_damaging(0.986) TCGA-MA-AA41-01 2 228882821 228882821 G A SPHKAP Nonsense_Mutation p.Q917* 0.20 TCGA-MA-AA41-01 2 234891699 234891699 G A TRPM8 Silent p.L864L 0.33 TCGA-MA-AA41-01 2 234926057 234926057 G C TRPM8 3'UTR 0.14 TCGA-MA-AA41-01 2 27850257 27850257 G C CCDC121 Nonsense_Mutation p.S299* 0.14 TCGA-MA-AA41-01 2 29456481 29456481 C G ALK Missense_Mutation p.E813Q 0.27 tolerated(0.06) probably_damaging(0.995) TCGA-MA-AA41-01 2 32582158 32582158 C G BIRC6 5'UTR 0.24 TCGA-MA-AA41-01 2 43520162 43520162 G C THADA Missense_Mutation p.I1543M 0.13 tolerated(0.08) benign(0.142) TCGA-MA-AA41-01 2 43801634 43801634 C T THADA Missense_Mutation p.E524K 0.31 tolerated(0.14) benign(0.157) TCGA-MA-AA41-01 2 43924400 43924400 C G PLEKHH2 Missense_Mutation p.S198C 0.20 tolerated(0.19) possibly_damaging(0.474) TCGA-MA-AA41-01 2 44200804 44200804 G C LRPPRC Missense_Mutation p.I437M 0.11 deleterious(0) possibly_damaging(0.463) TCGA-MA-AA41-01 2 44512761 44512761 C T SLC3A1 Intron 0.33 TCGA-MA-AA41-01 2 44586819 44586819 C T PREPL Silent p.L12L 0.14 TCGA-MA-AA41-01 2 55253539 55253539 C T RTN4 Missense_Mutation p.V566I 0.35 deleterious(0) benign(0.098) TCGA-MA-AA41-01 2 64862861 64862861 C G SERTAD2 3'UTR 0.17 TCGA-MA-AA41-01 2 64863714 64863714 C A SERTAD2 Missense_Mutation p.D98Y 0.29 deleterious(0.01) benign(0.195) TCGA-MA-AA41-01 2 64863760 64863760 C G SERTAD2 Silent p.L82L 0.25 TCGA-MA-AA41-01 2 70680414 70680414 G A TGFA Silent p.I137I 0.20 TCGA-MA-AA41-01 2 71801397 71801397 G A DYSF Missense_Mutation p.E1100K 0.17 tolerated(1) benign(0.009) TCGA-MA-AA41-01 2 73899564 73899564 C G ALMS1P RNA 0.46 TCGA-MA-AA41-01 2 74043372 74043372 G A C2orf78 Nonsense_Mutation p.W674* 0.18 TCGA-MA-AA41-01 2 74474257 74474257 C T SLC4A5 Silent p.K655K 0.17 TCGA-MA-AA41-01 2 74906877 74906877 G A SEMA4F Silent p.V618V 0.29 TCGA-MA-AA41-01 2 75720500 75720500 C G EVA1A Missense_Mutation p.L107F 0.12 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 2 79312700 79312700 G A REG1B Silent p.S117S 0.11 TCGA-MA-AA41-01 2 80529093 80529093 G A LRRTM1 3'UTR 0.36 TCGA-MA-AA41-01 2 8822196 8822196 G C ID2 5'UTR 0.42 TCGA-MA-AA41-01 2 88998024 88998024 G C RPIA Missense_Mutation p.G103A 0.33 deleterious(0) possibly_damaging(0.899) TCGA-MA-AA41-01 2 96933602 96933602 C T CIAO1 Silent p.V143V 0.20 TCGA-MA-AA41-01 2 96968927 96968927 G C SNRNP200 Silent p.L117L 0.14 TCGA-MA-AA41-01 2 97911226 97911226 G A ANKRD36 Silent p.L1634L 0.16 TCGA-MA-AA41-01 2 99681567 99681567 C T TSGA10 Missense_Mutation p.M413I 0.38 tolerated(0.18) benign(0) TCGA-MA-AA41-01 3 107764127 107764127 G C CD47 3'Flank 0.19 TCGA-MA-AA41-01 3 108284262 108284262 C G KIAA1524 Missense_Mutation p.L485F 0.08 deleterious(0) probably_damaging(0.998) TCGA-MA-AA41-01 3 108365479 108365479 C G DZIP3 Nonsense_Mutation p.S592* 0.24 TCGA-MA-AA41-01 3 112718380 112718380 C G GTPBP8 Missense_Mutation p.Q252E 0.35 tolerated(0.09) benign(0.297) TCGA-MA-AA41-01 3 118948695 118948695 G C B4GALT4 Silent p.L84L 0.15 TCGA-MA-AA41-01 3 119379100 119379100 C G POPDC2 Silent p.L57L 0.22 TCGA-MA-AA41-01 3 120371494 120371494 C G HGD Missense_Mutation p.R96T 0.11 deleterious(0) probably_damaging(0.993) TCGA-MA-AA41-01 3 124157796 124157796 G T KALRN Missense_Mutation p.G1035V 0.35 deleterious(0) benign(0.281) TCGA-MA-AA41-01 3 124397059 124397059 C G KALRN Missense_Mutation p.L709V 0.51 deleterious(0) probably_damaging(0.991) TCGA-MA-AA41-01 3 125647752 125647752 C G ALG1L 3'Flank 0.29 TCGA-MA-AA41-01 3 125854500 125854500 G A ALDH1L1 Silent p.I460I 0.15 TCGA-MA-AA41-01 3 127642957 127642957 G A KBTBD12 Silent p.K351K 0.16 TCGA-MA-AA41-01 3 130285773 130285773 G C COL6A6 Missense_Mutation p.E504Q 0.09 tolerated(0.39) probably_damaging(0.938) TCGA-MA-AA41-01 3 130452869 130452869 G A PIK3R4 Nonsense_Mutation p.Q325* 0.15 TCGA-MA-AA41-01 3 132047175 132047175 C G ACPP Nonsense_Mutation p.S62* 0.22 TCGA-MA-AA41-01 3 136664556 136664556 G A NCK1 Missense_Mutation p.E120K 0.22 tolerated(0.21) probably_damaging(1) TCGA-MA-AA41-01 3 141012182 141012182 G C ACPL2 3'UTR 0.42 TCGA-MA-AA41-01 3 141634834 141634834 G C ATP1B3 Missense_Mutation p.G185A 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-MA-AA41-01 3 142777002 142777002 G A U2SURP 3'UTR 0.21 TCGA-MA-AA41-01 3 14708970 14708970 G A CCDC174 Missense_Mutation p.R255Q 0.11 tolerated(0.44) possibly_damaging(0.666) TCGA-MA-AA41-01 3 148459131 148459131 T G AGTR1 Missense_Mutation p.I103M 0.50 tolerated(0.15) benign(0.171) TCGA-MA-AA41-01 3 151475212 151475212 G A AADACL2 Missense_Mutation p.D346N 0.19 deleterious(0) probably_damaging(0.994) TCGA-MA-AA41-01 3 15292457 15292457 G C CAPN7 Missense_Mutation p.E742Q 0.11 deleterious(0.04) benign(0.205) TCGA-MA-AA41-01 3 154042035 154042035 C T DHX36 Silent p.L57L 0.19 TCGA-MA-AA41-01 3 155267629 155267629 C G PLCH1 Missense_Mutation p.E425Q 0.12 deleterious(0) possibly_damaging(0.833) TCGA-MA-AA41-01 3 164737443 164737443 G A SI Nonsense_Mutation p.R1124* 0.16 TCGA-MA-AA41-01 3 17131568 17131568 C A PLCL2 3'UTR 0.27 TCGA-MA-AA41-01 3 171362728 171362728 G C PLD1 Missense_Mutation p.L839V 0.08 deleterious(0.05) benign(0.015) TCGA-MA-AA41-01 3 179371166 179371166 C T USP13 Silent p.F51F 0.11 TCGA-MA-AA41-01 3 180685889 180685889 G C FXR1 Missense_Mutation p.D417H 0.18 deleterious(0) possibly_damaging(0.894) TCGA-MA-AA41-01 3 183400465 183400465 G A KLHL24 3'UTR 0.11 TCGA-MA-AA41-01 3 184018129 184018129 C T PSMD2 Missense_Mutation p.S85F 0.37 deleterious(0) probably_damaging(0.987) TCGA-MA-AA41-01 3 184075869 184075869 C G CLCN2 Missense_Mutation p.E166Q 0.15 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 3 190028040 190028040 G C CLDN1 Missense_Mutation p.L131V 0.07 tolerated(0.24) possibly_damaging(0.836) TCGA-MA-AA41-01 3 193130105 193130105 G A ATP13A4 Missense_Mutation p.P1024S 0.14 tolerated(0.41) benign(0.004) TCGA-MA-AA41-01 3 194079578 194079578 C A LRRC15 3'UTR 0.32 TCGA-MA-AA41-01 3 195638750 195638750 G C RP11-352G9.1 3'Flank 0.21 TCGA-MA-AA41-01 3 20212637 20212637 C T SGOL1 Missense_Mutation p.R457K 0.38 tolerated(1) benign(0) TCGA-MA-AA41-01 3 33668548 33668548 C T CLASP2 Missense_Mutation p.E324K 0.31 deleterious(0.01) possibly_damaging(0.489) TCGA-MA-AA41-01 3 38949460 38949460 C G SCN11A Missense_Mutation p.D485H 0.12 deleterious(0.05) probably_damaging(0.94) TCGA-MA-AA41-01 3 45965207 45965215 GCCCTGGAT - FYCO1 In_Frame_Del p.I1432_G1434del 0.23 TCGA-MA-AA41-01 3 48200436 48200436 C T CDC25A Silent p.%3D 0.59 TCGA-MA-AA41-01 3 49573017 49573017 C G DAG1 3'UTR 0.15 TCGA-MA-AA41-01 3 52437782 52437782 G C BAP1 Nonsense_Mutation p.S460* 0.76 TCGA-MA-AA41-01 3 52580614 52580614 C G PBRM1 3'Flank 0.62 TCGA-MA-AA41-01 3 53140872 53140872 C T RFT1 Silent p.V263V 0.38 TCGA-MA-AA41-01 3 53919453 53919453 G A SELK 3'UTR 0.24 TCGA-MA-AA41-01 3 56468526 56468526 G C ERC2 Missense_Mutation p.I170M 0.92 tolerated(0.23) possibly_damaging(0.615) TCGA-MA-AA41-01 3 71027092 71027092 G A FOXP1 Missense_Mutation p.A414V 0.45 tolerated(0.06) benign(0.071) TCGA-MA-AA41-01 3 74315679 74315679 C T CNTN3 Missense_Mutation p.G980E 0.28 deleterious(0) probably_damaging(0.987) TCGA-MA-AA41-01 3 97598886 97598886 C A CRYBG3 Missense_Mutation p.P368T 0.27 tolerated(0.25) possibly_damaging(0.569) TCGA-MA-AA41-01 3 9789629 9789629 C T BRPF1 3'UTR 0.20 TCGA-MA-AA41-01 3 98216630 98216630 C G OR5K2 Missense_Mutation p.L36V 0.11 tolerated(0.13) benign(0.033) TCGA-MA-AA41-01 4 100822111 100822111 C T DNAJB14 3'UTR 0.20 TCGA-MA-AA41-01 4 104070064 104070064 C G CENPE Missense_Mutation p.E1260D 0.23 benign(0.26) TCGA-MA-AA41-01 4 109588582 109588582 G C OSTC 3'Flank 0.88 TCGA-MA-AA41-01 4 113460742 113460742 C G C4orf21 Missense_Mutation p.K2092N 0.28 deleterious(0.02) unknown(0) TCGA-MA-AA41-01 4 128584538 128584538 G C INTU Silent p.V257V 0.26 TCGA-MA-AA41-01 4 142154894 142154894 G A ZNF330 Silent p.Q238Q 0.62 TCGA-MA-AA41-01 4 144468059 144468059 C T SMARCA5 Missense_Mutation p.S884L 0.16 deleterious(0.04) benign(0.34) TCGA-MA-AA41-01 4 156680957 156680957 G A GUCY1B3 Missense_Mutation p.A8T 0.10 deleterious(0) probably_damaging(0.985) TCGA-MA-AA41-01 4 15690387 15690387 G C FAM200B Missense_Mutation p.R596T 0.40 tolerated(0.1) benign(0.157) TCGA-MA-AA41-01 4 15691093 15691093 G A FAM200B 3'Flank 0.12 TCGA-MA-AA41-01 4 16000028 16000028 G A PROM1 Silent p.L554L 0.23 TCGA-MA-AA41-01 4 16010624 16010624 C T PROM1 Missense_Mutation p.E417K 0.14 tolerated(0.05) possibly_damaging(0.596) TCGA-MA-AA41-01 4 165962632 165962632 G A TRIM60 Missense_Mutation p.E470K 0.21 deleterious(0.01) probably_damaging(0.937) TCGA-MA-AA41-01 4 166234473 166234473 G C KLHL2 Missense_Mutation p.E479Q 0.43 tolerated(0.33) benign(0.028) TCGA-MA-AA41-01 4 183063671 183063671 C T AC108142.1 RNA 0.26 TCGA-MA-AA41-01 4 187539192 187539192 G A FAT1 Nonsense_Mutation p.Q2850* 0.58 TCGA-MA-AA41-01 4 2930210 2930210 C T ADD1 Missense_Mutation p.P756L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-MA-AA41-01 4 36069774 36069774 G A ARAP2 Nonsense_Mutation p.R1624* 0.33 TCGA-MA-AA41-01 4 40245884 40245884 G C RHOH 3'UTR 0.14 TCGA-MA-AA41-01 4 42403028 42403028 G C SHISA3 Splice_Site p.X93_splice 0.20 TCGA-MA-AA41-01 4 52946055 52946055 G C SPATA18 Missense_Mutation p.G442A 0.08 tolerated(0.35) probably_damaging(0.992) TCGA-MA-AA41-01 4 55602735 55602735 C G KIT Silent p.V852V 0.08 TCGA-MA-AA41-01 4 57221548 57221548 G C AASDH Missense_Mutation p.I301M 0.09 deleterious(0.03) possibly_damaging(0.465) TCGA-MA-AA41-01 4 69795749 69795749 C T UGT2A3 Missense_Mutation p.D456N 0.07 deleterious(0.01) possibly_damaging(0.764) TCGA-MA-AA41-01 4 71024540 71024540 G C C4orf40 Missense_Mutation p.E191Q 0.20 tolerated(0.37) unknown(0) TCGA-MA-AA41-01 4 71347438 71347438 C A MUC7 Nonsense_Mutation p.S326* 0.17 TCGA-MA-AA41-01 4 71639257 71639257 C T RUFY3 Silent p.L242L 0.67 TCGA-MA-AA41-01 4 77816951 77816951 C G SOWAHB Silent p.G684G 0.15 TCGA-MA-AA41-01 4 82348711 82348711 C T RASGEF1B 3'UTR 0.38 TCGA-MA-AA41-01 4 89625695 89625695 C T HERC3 Missense_Mutation p.P960S 0.17 deleterious(0.05) possibly_damaging(0.753) TCGA-MA-AA41-01 4 89912204 89912204 C G FAM13A Missense_Mutation p.L175F 0.19 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 5 113698657 113698657 C T KCNN2 Missense_Mutation p.S62L 0.17 tolerated_low_confidence(0.1) benign(0) TCGA-MA-AA41-01 5 118574743 118574743 G C DMXL1 Silent p.L2852L 0.41 TCGA-MA-AA41-01 5 13692025 13692025 G A DNAH5 3'UTR 0.33 TCGA-MA-AA41-01 5 137521210 137521210 G A KIF20A Missense_Mutation p.E646K 0.42 tolerated(0.12) possibly_damaging(0.643) TCGA-MA-AA41-01 5 137801564 137801564 G A EGR1 Missense_Mutation p.M38I 0.48 tolerated_low_confidence(0.1) unknown(0) TCGA-MA-AA41-01 5 140167642 140167642 T C PCDHA1 Silent p.H589H 0.11 TCGA-MA-AA41-01 5 140476338 140476338 C T PCDHB2 Missense_Mutation p.S655L 0.08 deleterious_low_confidence(0) possibly_damaging(0.458) TCGA-MA-AA41-01 5 140535609 140535609 G A PCDHB17 Silent p.E11E 0.21 TCGA-MA-AA41-01 5 145878130 145878130 G A TCERG1 Missense_Mutation p.A755T 0.19 deleterious(0.01) unknown(0) TCGA-MA-AA41-01 5 154316639 154316639 C A GEMIN5 Silent p.V91V 0.10 TCGA-MA-AA41-01 5 156187877 156187877 G A SGCD 3'Flank 0.50 TCGA-MA-AA41-01 5 17217111 17217111 C T BASP1 5'Flank 0.29 TCGA-MA-AA41-01 5 175927115 175927115 G C FAF2 Missense_Mutation p.E375Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 5 176019770 176019770 C T CDHR2 Nonsense_Mutation p.Q1261* 0.29 TCGA-MA-AA41-01 5 176943773 176943773 C G DDX41 Missense_Mutation p.E31Q 0.33 deleterious(0.03) benign(0.071) TCGA-MA-AA41-01 5 180625734 180625734 G C TRIM7 Missense_Mutation p.S315C 0.24 deleterious(0) probably_damaging(0.994) TCGA-MA-AA41-01 5 180626920 180626920 G A TRIM7 Silent p.I260I 0.40 TCGA-MA-AA41-01 5 37006603 37006603 G C NIPBL Missense_Mutation p.E1334Q 0.21 deleterious(0) probably_damaging(0.972) TCGA-MA-AA41-01 5 37183592 37183592 C G C5orf42 Missense_Mutation p.R1564T 0.44 deleterious(0) probably_damaging(0.928) TCGA-MA-AA41-01 5 37333682 37333682 C G NUP155 Missense_Mutation p.L467F 0.44 tolerated(0.86) benign(0.003) TCGA-MA-AA41-01 5 38478861 38478861 G A LIFR 3'UTR 0.45 TCGA-MA-AA41-01 5 442912 442912 G A C5orf55 Missense_Mutation p.S9L 0.12 tolerated_low_confidence(1) possibly_damaging(0.519) TCGA-MA-AA41-01 5 52097378 52097378 G A PELO Missense_Mutation p.E288K 0.32 deleterious(0) benign(0.362) TCGA-MA-AA41-01 5 6746422 6746422 G A PAPD7 Silent p.L197L 0.17 TCGA-MA-AA41-01 5 68661012 68661012 G C TAF9 Missense_Mutation p.Q185E 0.29 tolerated(0.11) possibly_damaging(0.798) TCGA-MA-AA41-01 5 72801139 72801139 G C BTF3 3'UTR 0.40 TCGA-MA-AA41-01 5 7757681 7757681 G A ADCY2 Missense_Mutation p.M692I 0.53 tolerated(0.57) benign(0) TCGA-MA-AA41-01 5 79498837 79498837 G A SERINC5 Silent p.L21L 0.27 TCGA-MA-AA41-01 5 89755046 89755046 G C MBLAC2 3'UTR 0.28 TCGA-MA-AA41-01 5 95223210 95223210 G A ELL2 3'UTR 0.33 TCGA-MA-AA41-01 5 95223493 95223493 C G ELL2 3'UTR 0.20 TCGA-MA-AA41-01 5 98240731 98240731 C T CHD1 Missense_Mutation p.G42E 0.14 tolerated_low_confidence(0.15) probably_damaging(0.931) TCGA-MA-AA41-01 6 106543501 106543501 G C PRDM1 Silent p.V101V 0.29 TCGA-MA-AA41-01 6 107391445 107391445 G A BEND3 Missense_Mutation p.S317L 0.32 tolerated(0.38) possibly_damaging(0.801) TCGA-MA-AA41-01 6 107391456 107391456 G C BEND3 Silent p.V313V 0.23 TCGA-MA-AA41-01 6 112437167 112437167 C T LAMA4 Missense_Mutation p.E1671K 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-MA-AA41-01 6 116264282 116264282 C T FRK Missense_Mutation p.E403K 0.57 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 6 116747762 116747762 G T DSE Nonsense_Mutation p.E148* 0.23 TCGA-MA-AA41-01 6 127775041 127775041 C G KIAA0408 Missense_Mutation p.R29T 0.15 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 6 130764067 130764067 G C TMEM200A 3'UTR 0.22 TCGA-MA-AA41-01 6 132211577 132211577 C G ENPP1 Missense_Mutation p.Q902E 0.31 deleterious(0) possibly_damaging(0.507) TCGA-MA-AA41-01 6 149795653 149795653 G C ZC3H12D Missense_Mutation p.F9L 0.44 deleterious(0.03) probably_damaging(0.939) TCGA-MA-AA41-01 6 151773559 151773559 C T C6orf211 5'UTR 0.33 TCGA-MA-AA41-01 6 155458425 155458425 C G TIAM2 Missense_Mutation p.Q437E 0.40 tolerated(0.18) benign(0.007) TCGA-MA-AA41-01 6 159184469 159184469 G C SYTL3 Missense_Mutation p.E551Q 0.12 deleterious(0.01) probably_damaging(0.955) TCGA-MA-AA41-01 6 159655228 159655228 C T FNDC1 Silent p.I1228I 0.30 TCGA-MA-AA41-01 6 161494524 161494524 G A MAP3K4 Silent p.L659L 0.35 TCGA-MA-AA41-01 6 170103365 170103365 G C C6orf120 3'UTR 0.36 TCGA-MA-AA41-01 6 28327510 28327510 C T ZKSCAN3 Silent p.F49F 0.26 TCGA-MA-AA41-01 6 2895653 2895653 G A SERPINB9 Silent p.I132I 0.16 TCGA-MA-AA41-01 6 31138182 31138182 C T POU5F1 Silent p.G72G 0.14 TCGA-MA-AA41-01 6 31746752 31746752 C T VARS Missense_Mutation p.E1240K 0.18 tolerated(0.82) benign(0) TCGA-MA-AA41-01 6 33399957 33399957 G A SYNGAP1 Silent p.S105S 0.20 TCGA-MA-AA41-01 6 38863963 38863963 G A DNAH8 Missense_Mutation p.E2751K 0.35 benign(0.196) TCGA-MA-AA41-01 6 41774621 41774621 G A USP49 Missense_Mutation p.S34F 0.20 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 6 43182901 43182901 G A CUL9 Missense_Mutation p.D1925N 0.46 deleterious(0.05) possibly_damaging(0.85) TCGA-MA-AA41-01 6 46663675 46663675 G C TDRD6 Missense_Mutation p.G2055A 0.13 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 6 49439825 49439825 G T CENPQ Missense_Mutation p.K69N 0.31 tolerated(0.05) benign(0.232) TCGA-MA-AA41-01 6 56438511 56438511 G C DST Missense_Mutation p.S1778C 0.13 probably_damaging(0.999) TCGA-MA-AA41-01 6 56469322 56469322 C T DST Intron 0.24 TCGA-MA-AA41-01 6 56469369 56469369 C T DST Intron 0.14 TCGA-MA-AA41-01 6 56954936 56954936 C T ZNF451 5'UTR 0.16 TCGA-MA-AA41-01 6 57182432 57182432 G A PRIM2 5'UTR 0.32 TCGA-MA-AA41-01 6 72922883 72922883 G A RIMS1 Intron 0.41 TCGA-MA-AA41-01 6 75994341 75994341 T C TMEM30A Missense_Mutation p.Y5C 0.43 tolerated_low_confidence(0.1) benign(0.007) TCGA-MA-AA41-01 6 83818686 83818686 C T DOPEY1 Silent p.L126L 0.34 TCGA-MA-AA41-01 7 100804225 100804225 C G AP1S1 3'UTR 0.75 TCGA-MA-AA41-01 7 104546746 104546746 G A LHFPL3 3'UTR 0.72 TCGA-MA-AA41-01 7 107342350 107342350 G C SLC26A4 Missense_Mutation p.D628H 0.17 deleterious(0.03) possibly_damaging(0.739) TCGA-MA-AA41-01 7 108137152 108137152 C T PNPLA8 Missense_Mutation p.E501K 0.31 deleterious(0) possibly_damaging(0.524) TCGA-MA-AA41-01 7 110763806 110763806 C T LRRN3 Silent p.H326H 0.16 TCGA-MA-AA41-01 7 112472716 112472716 G A C7orf60 Missense_Mutation p.S163L 0.11 tolerated(0.38) benign(0.001) TCGA-MA-AA41-01 7 12728219 12728219 G A ARL4A Missense_Mutation p.E114K 0.54 deleterious(0) probably_damaging(0.996) TCGA-MA-AA41-01 7 132937919 132937919 C T EXOC4 Missense_Mutation p.S21L 0.45 deleterious(0) probably_damaging(0.982) TCGA-MA-AA41-01 7 133812270 133812270 G C LRGUK Silent p.T50T 0.19 TCGA-MA-AA41-01 7 138524904 138524904 C G KIAA1549 Missense_Mutation p.E1858Q 0.49 tolerated(0.08) possibly_damaging(0.827) TCGA-MA-AA41-01 7 140434289 140434289 C T BRAF 3'UTR 0.50 TCGA-MA-AA41-01 7 142983225 142983225 C T TMEM139 Silent p.L59L 0.23 TCGA-MA-AA41-01 7 143418399 143418399 C T FAM115C Silent p.T547T 0.54 TCGA-MA-AA41-01 7 151074261 151074261 G A NUB1 Missense_Mutation p.E624K 0.39 tolerated(0.44) possibly_damaging(0.481) TCGA-MA-AA41-01 7 15405794 15405794 C G AGMO Missense_Mutation p.L376F 0.15 deleterious(0.03) possibly_damaging(0.803) TCGA-MA-AA41-01 7 157202682 157202682 C G DNAJB6 Silent p.L295L 0.36 TCGA-MA-AA41-01 7 20199196 20199196 T C MACC1 Missense_Mutation p.H263R 0.50 deleterious(0.01) possibly_damaging(0.535) TCGA-MA-AA41-01 7 21805062 21805062 C G DNAH11 Missense_Mutation p.S2993C 0.13 possibly_damaging(0.601) TCGA-MA-AA41-01 7 29546922 29546922 G C CHN2 Missense_Mutation p.R357T 0.12 deleterious(0) probably_damaging(0.995) TCGA-MA-AA41-01 7 29606683 29606683 G A PRR15 3'UTR 0.15 TCGA-MA-AA41-01 7 589980 589980 C T PRKAR1B 3'UTR 0.50 TCGA-MA-AA41-01 7 6443534 6443534 G C RAC1 3'Flank 0.09 TCGA-MA-AA41-01 7 65579937 65579937 G A CRCP 5'UTR 0.18 TCGA-MA-AA41-01 7 75657996 75657996 G A STYXL1 Silent p.D43D 0.15 TCGA-MA-AA41-01 7 79764593 79764593 C T GNAI1 Silent p.L39L 0.54 TCGA-MA-AA41-01 7 84625993 84625993 C T SEMA3D 3'UTR 0.31 TCGA-MA-AA41-01 7 8474070 8474070 C G NXPH1 5'UTR 0.20 TCGA-MA-AA41-01 7 92355064 92355064 G A CDK6 Missense_Mutation p.S138L 0.31 tolerated(0.06) possibly_damaging(0.558) TCGA-MA-AA41-01 7 97770757 97770757 G T LMTK2 Nonsense_Mutation p.E94* 0.67 TCGA-MA-AA41-01 7 99809471 99809471 C G STAG3 Nonsense_Mutation p.S1190* 0.15 TCGA-MA-AA41-01 8 100832188 100832188 G A VPS13B Silent p.V2969V 0.26 TCGA-MA-AA41-01 8 123965679 123965679 G C ZHX2 Silent p.L643L 0.25 TCGA-MA-AA41-01 8 124204087 124204087 C T FAM83A Silent p.F175F 0.09 TCGA-MA-AA41-01 8 124373857 124373857 G A ATAD2 Missense_Mutation p.S360L 0.19 deleterious(0.01) probably_damaging(0.941) TCGA-MA-AA41-01 8 124989806 124989806 C G FER1L6 Missense_Mutation p.F340L 0.12 deleterious(0) possibly_damaging(0.643) TCGA-MA-AA41-01 8 125500762 125500762 C G TATDN1 3'UTR 0.13 TCGA-MA-AA41-01 8 133945830 133945830 G A TG Missense_Mutation p.S1614N 0.25 tolerated(0.55) benign(0.138) TCGA-MA-AA41-01 8 135614749 135614749 C T ZFAT Missense_Mutation p.D405N 0.38 tolerated(0.07) benign(0.152) TCGA-MA-AA41-01 8 141557695 141557695 C T AGO2 Silent p.L540L 0.27 TCGA-MA-AA41-01 8 144462835 144462835 C A RHPN1 Silent p.R431R 0.24 TCGA-MA-AA41-01 8 144462836 144462836 G T RHPN1 Nonsense_Mutation p.E432* 0.24 TCGA-MA-AA41-01 8 144464066 144464066 G C RHPN1 Silent p.L575L 0.35 TCGA-MA-AA41-01 8 146156745 146156745 G C ZNF16 Silent p.L476L 0.18 TCGA-MA-AA41-01 8 17554916 17554916 G A MTUS1 Intron 0.50 TCGA-MA-AA41-01 8 27950704 27950704 C G ELP3 5'UTR 0.10 TCGA-MA-AA41-01 8 2819987 2819987 C T CSMD1 Splice_Site p.X3210_splice 0.46 TCGA-MA-AA41-01 8 28575463 28575463 C G EXTL3 Missense_Mutation p.F629L 0.13 deleterious(0) probably_damaging(0.983) TCGA-MA-AA41-01 8 28575471 28575471 C T EXTL3 Missense_Mutation p.S632L 0.14 deleterious(0) probably_damaging(0.969) TCGA-MA-AA41-01 8 29963541 29963541 G C LEPROTL1 Intron 0.17 TCGA-MA-AA41-01 8 30210598 30210598 C T TUBBP1 RNA 0.24 TCGA-MA-AA41-01 8 30242651 30242651 G A RBPMS Missense_Mutation p.E15K 0.24 tolerated(0.51) benign(0.082) TCGA-MA-AA41-01 8 30538486 30538486 G T GSR Missense_Mutation p.H452N 0.31 tolerated(0.17) probably_damaging(0.99) TCGA-MA-AA41-01 8 33358048 33358048 T C MAK16 3'UTR 0.19 TCGA-MA-AA41-01 8 33424276 33424276 G A RNF122 5'UTR 0.28 TCGA-MA-AA41-01 8 37601895 37601895 G A ERLIN2 Missense_Mutation p.D87N 0.14 deleterious(0) probably_damaging(0.992) TCGA-MA-AA41-01 8 37791928 37791928 G C GOT1L1 Missense_Mutation p.I383M 0.18 deleterious(0) probably_damaging(0.917) TCGA-MA-AA41-01 8 38157069 38157069 G A WHSC1L1 Missense_Mutation p.S884L 0.12 tolerated_low_confidence(0.08) possibly_damaging(0.73) TCGA-MA-AA41-01 8 48730077 48730077 C A PRKDC Missense_Mutation p.W3163L 0.23 probably_damaging(0.954) TCGA-MA-AA41-01 8 48840447 48840447 C A PRKDC Missense_Mutation p.A715S 0.23 benign(0.001) TCGA-MA-AA41-01 8 56699343 56699343 C G TGS1 Missense_Mutation p.P296A 0.11 tolerated(0.18) benign(0.025) TCGA-MA-AA41-01 8 61765864 61765864 G A CHD7 Missense_Mutation p.E2194K 0.21 benign(0.001) TCGA-MA-AA41-01 8 70981822 70981822 G A PRDM14 Silent p.L92L 0.26 TCGA-MA-AA41-01 8 77767392 77767392 G C ZFHX4 Missense_Mutation p.E2745D 0.17 probably_damaging(0.979) TCGA-MA-AA41-01 8 80677845 80677845 G A HEY1 Missense_Mutation p.R169W 0.11 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 8 97258552 97258552 C T MTERFD1 Missense_Mutation p.E270K 0.11 tolerated(0.9) benign(0.002) TCGA-MA-AA41-01 8 99019414 99019414 C T MATN2 Missense_Mutation p.S470L 0.18 tolerated(0.63) benign(0.049) TCGA-MA-AA41-01 8 99170303 99170303 C G POP1 Missense_Mutation p.S960C 0.31 deleterious(0.03) benign(0.242) TCGA-MA-AA41-01 9 100328129 100328129 G A TMOD1 Splice_Site p.X207_splice 0.43 TCGA-MA-AA41-01 9 100417206 100417206 G A NCBP1 Missense_Mutation p.M405I 0.40 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 9 100431197 100431197 C T NCBP1 Nonsense_Mutation p.Q696* 0.28 TCGA-MA-AA41-01 9 101151240 101151240 C T GABBR2 Silent p.R475R 0.40 TCGA-MA-AA41-01 9 108151918 108151918 C T SLC44A1 3'UTR 0.40 TCGA-MA-AA41-01 9 127670741 127670741 G C GOLGA1 Missense_Mutation p.A327G 0.29 deleterious(0.01) possibly_damaging(0.871) TCGA-MA-AA41-01 9 130509443 130509443 G A SH2D3C Missense_Mutation p.S416F 0.29 deleterious(0.03) probably_damaging(0.982) TCGA-MA-AA41-01 9 130885236 130885236 G A PTGES2 Silent p.L288L 0.37 TCGA-MA-AA41-01 9 130943016 130943016 C G CIZ1 Silent p.R222R 0.10 TCGA-MA-AA41-01 9 131483588 131483588 G A ZDHHC12 Missense_Mutation p.R226C 0.43 tolerated(0.08) probably_damaging(0.993) TCGA-MA-AA41-01 9 131905595 131905595 G C PPP2R4 Intron 0.53 TCGA-MA-AA41-01 9 132084366 132084366 G A C9orf106 RNA 0.27 TCGA-MA-AA41-01 9 132995313 132995313 C A NCS1 3'UTR 0.22 TCGA-MA-AA41-01 9 133799644 133799644 C T FIBCD1 Missense_Mutation p.R231Q 0.33 tolerated(0.08) benign(0.149) TCGA-MA-AA41-01 9 135906488 135906488 G T GTF3C5 Silent p.P30P 0.36 TCGA-MA-AA41-01 9 136227215 136227215 G C SURF2 Missense_Mutation p.E198Q 0.30 benign(0.08) TCGA-MA-AA41-01 9 140346851 140346851 C T NSMF Missense_Mutation p.G401E 0.29 deleterious(0) probably_damaging(1) TCGA-MA-AA41-01 9 19342750 19342750 G C DENND4C Missense_Mutation p.D993H 0.14 deleterious(0.03) possibly_damaging(0.854) TCGA-MA-AA41-01 9 34652195 34652195 G A IL11RA Intron 0.15 TCGA-MA-AA41-01 9 35404827 35404827 G A UNC13B 3'UTR 0.31 TCGA-MA-AA41-01 9 36121629 36121629 G A RECK Missense_Mutation p.E880K 0.37 deleterious(0.02) probably_damaging(0.929) TCGA-MA-AA41-01 9 71992551 71992551 G A FAM189A2 Missense_Mutation p.E129K 0.35 tolerated(0.14) benign(0.41) TCGA-MA-AA41-01 9 72933824 72933824 G C SMC5 Missense_Mutation p.E699Q 0.29 deleterious(0.02) possibly_damaging(0.714) TCGA-MA-AA41-01 9 79267468 79267468 C T PRUNE2 Missense_Mutation p.E2830K 0.10 deleterious(0) probably_damaging(0.967) TCGA-MA-AA41-01 9 79325980 79325980 C T PRUNE2 Missense_Mutation p.E404K 0.14 deleterious(0) probably_damaging(0.998) TCGA-MA-AA41-01 9 86501980 86501980 G A KIF27 Silent p.L739L 0.39 TCGA-MA-AA41-01 9 87285659 87285659 T A NTRK2 5'UTR 0.13 TCGA-MA-AA41-01 9 91617634 91617634 G C S1PR3 3'UTR 0.15 TCGA-MA-AA41-01 9 95179239 95179239 G C OMD Missense_Mutation p.S201C 0.33 deleterious(0.01) possibly_damaging(0.906) TCGA-MA-AA41-01 X 100668606 100668606 G C HNRNPH2 3'UTR 0.17 TCGA-MA-AA41-01 X 107406162 107406162 G A COL4A6 Silent p.L1393L 0.18 TCGA-MA-AA41-01 X 107976697 107976697 C T IRS4 Missense_Mutation p.V960M 0.55 tolerated(1) unknown(0) TCGA-MA-AA41-01 X 123775711 123775711 G A TENM1 Silent p.H669H 0.19 TCGA-MA-AA41-01 X 13336898 13336898 C T ATXN3L 3'UTR 0.62 TCGA-MA-AA41-01 X 13337019 13337019 C T ATXN3L Missense_Mutation p.M345I 0.54 deleterious_low_confidence(0.03) benign(0.002) TCGA-MA-AA41-01 X 134125410 134125410 C T SMIM10 3'UTR 0.16 TCGA-MA-AA41-01 X 13787201 13787201 C G OFD1 Missense_Mutation p.H1005D 0.29 tolerated(0.09) benign(0.402) TCGA-MA-AA41-01 X 14044175 14044175 C G GEMIN8 5'UTR 0.41 TCGA-MA-AA41-01 X 140984772 140984772 A C MAGEC3 Missense_Mutation p.S410R 0.33 tolerated(0.06) benign(0.183) TCGA-MA-AA41-01 X 153416420 153416420 G C OPN1LW Silent p.L135L 0.51 TCGA-MA-AA41-01 X 153581014 153581014 C T FLNA Missense_Mutation p.E2137K 0.25 deleterious(0.01) benign(0.039) TCGA-MA-AA41-01 X 18748303 18748303 G A PPEF1 Silent p.L17L 0.26 TCGA-MA-AA41-01 X 19387204 19387204 G C MAP3K15 Silent p.L1178L 0.07 TCGA-MA-AA41-01 X 20173563 20173563 G C RPS6KA3 Missense_Mutation p.L726V 0.17 deleterious(0) probably_damaging(0.965) TCGA-MA-AA41-01 X 22266042 22266042 G C PHEX Missense_Mutation p.R741T 0.16 tolerated(0.25) probably_damaging(0.998) TCGA-MA-AA41-01 X 26157185 26157185 C T MAGEB18 Missense_Mutation p.T28M 0.16 deleterious(0) possibly_damaging(0.806) TCGA-MA-AA41-01 X 30269087 30269087 C G MAGEB1 Silent p.L159L 0.09 TCGA-MA-AA41-01 X 30326579 30326579 T G NR0B1 Missense_Mutation p.Q301P 0.37 deleterious(0) probably_damaging(0.999) TCGA-MA-AA41-01 X 306380 306380 C T PPP2R3B Missense_Mutation p.D303N 0.41 deleterious(0.02) probably_damaging(0.951) TCGA-MA-AA41-01 X 30872917 30872917 G C TAB3 Missense_Mutation p.Q289E 0.27 tolerated(0.26) probably_damaging(0.949) TCGA-MA-AA41-01 X 32360261 32360261 C T DMD Missense_Mutation p.E1960K 0.11 possibly_damaging(0.486) TCGA-MA-AA41-01 X 38136019 38136019 C T TM4SF2 Intron 0.10 TCGA-MA-AA41-01 X 38158219 38158219 C T RPGR Missense_Mutation p.R412Q 0.20 probably_damaging(0.994) TCGA-MA-AA41-01 X 40996264 40996264 C G USP9X Missense_Mutation p.R215G 0.29 deleterious(0) benign(0.182) TCGA-MA-AA41-01 X 41207844 41207844 G A DDX3X 3'UTR 0.51 TCGA-MA-AA41-01 X 46949350 46949350 C T RGN Silent p.S174S 0.17 TCGA-MA-AA41-01 X 47065828 47065828 C T UBA1 Silent p.I641I 0.35 TCGA-MA-AA41-01 X 47517214 47517214 G A UXT Silent p.Y61Y 0.61 TCGA-MA-AA41-01 X 48849982 48849982 G T GRIPAP1 Missense_Mutation p.S105R 0.32 benign(0.28) TCGA-MA-AA41-01 X 49957574 49957574 G A AKAP4 Missense_Mutation p.S597L 0.24 deleterious(0.03) benign(0.058) TCGA-MA-AA41-01 X 51488991 51488991 G A GSPT2 3'UTR 0.08 TCGA-MA-AA41-01 X 53222205 53222205 G C KDM5C Missense_Mutation p.L1543V 0.12 tolerated_low_confidence(0.2) benign(0.005) TCGA-MA-AA41-01 X 53559833 53559833 C A HUWE1 3'UTR 0.26 TCGA-MA-AA41-01 X 53602114 53602114 C A HUWE1 Splice_Site p.X2033_splice 0.25 TCGA-MA-AA41-01 X 57622575 57622575 C G ZXDB 3'UTR 0.11 TCGA-MA-AA41-01 X 57934850 57934850 G C ZXDA Missense_Mutation p.Q669E 0.43 tolerated(0.24) probably_damaging(0.966) TCGA-MA-AA41-01 X 63409991 63409991 C T AMER1 Missense_Mutation p.S1059N 0.67 tolerated(0.12) benign(0.025) TCGA-MA-AA41-01 X 70612782 70612782 C T TAF1 Missense_Mutation p.R1017C 0.18 deleterious(0) probably_damaging(0.987) TCGA-MA-AA41-01 X 70814615 70814615 G A ACRC Silent p.P69P 0.22 TCGA-MA-AA41-01 X 79973136 79973136 C T BRWD3 Missense_Mutation p.E723K 0.18 deleterious(0.04) possibly_damaging(0.489) TCGA-MA-AA41-01 X 84528113 84528113 T A ZNF711 3'UTR 0.09 TCGA-MA-AA41-01 X 91134295 91134295 C A PCDH11X Intron 0.17 TCGA-MA-AA41-01 X 9687627 9687627 C T TBL1X 3'UTR 0.52 TCGA-MA-AA42-01 10 112641197 112641197 G A PDCD4 Missense_Mutation p.A84T 0.38 tolerated(0.38) benign(0.001) TCGA-MA-AA42-01 10 115349109 115349109 C T HABP2 3'UTR 0.42 TCGA-MA-AA42-01 10 115349269 115349269 C T HABP2 3'UTR 0.40 TCGA-MA-AA42-01 10 124399699 124399699 T C DMBT1 Silent p.N2233N 0.13 TCGA-MA-AA42-01 10 16948223 16948223 C G CUBN Missense_Mutation p.D2631H 0.37 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 10 18828499 18828499 G A CACNB2 Missense_Mutation p.R610Q 0.11 tolerated_low_confidence(0.43) benign(0.102) TCGA-MA-AA42-01 10 25160960 25160960 G A PRTFDC1 Silent p.I124I 0.48 TCGA-MA-AA42-01 10 27537614 27537614 G A RP11-85G18.6 Intron 0.32 TCGA-MA-AA42-01 10 35896913 35896913 G - GJD4 Frame_Shift_Del p.A159Pfs*39 0.42 TCGA-MA-AA42-01 10 75834524 75834524 A - VCL Frame_Shift_Del p.N217Tfs*7 0.20 TCGA-MA-AA42-01 10 95360480 95360480 G A RBP4 Silent p.S64S 0.11 TCGA-MA-AA42-01 10 96064404 96064404 T C PLCE1 Splice_Site p.X1874_splice 0.38 TCGA-MA-AA42-01 11 100226864 100226864 T C CNTN5 Silent p.S1072S 0.17 TCGA-MA-AA42-01 11 100858275 100858275 G C ARHGAP42 Missense_Mutation p.E830Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 11 101785970 101785970 G C KIAA1377 5'UTR 0.09 TCGA-MA-AA42-01 11 108383194 108383194 C T EXPH5 Missense_Mutation p.E1014K 0.27 tolerated(0.09) benign(0.033) TCGA-MA-AA42-01 11 109295364 109295364 G A C11orf87 3'UTR 0.08 TCGA-MA-AA42-01 11 110448570 110448570 C A ARHGAP20 3'UTR 0.33 TCGA-MA-AA42-01 11 111156646 111156646 A T C11orf53 Missense_Mutation p.D193V 0.13 deleterious(0) probably_damaging(0.978) TCGA-MA-AA42-01 11 111168286 111168286 C A COLCA1 5'UTR 0.26 TCGA-MA-AA42-01 11 113803771 113803771 A G HTR3B Missense_Mutation p.I218V 0.11 tolerated(0.64) benign(0.014) TCGA-MA-AA42-01 11 114272469 114272469 C T RBM7 Missense_Mutation p.P49L 0.36 deleterious(0.05) benign(0.052) TCGA-MA-AA42-01 11 118376683 118376683 C T KMT2A Missense_Mutation p.A3359V 0.19 benign(0.079) TCGA-MA-AA42-01 11 118532191 118532191 G A TREH Silent p.R215R 0.20 TCGA-MA-AA42-01 11 119207774 119207774 G A RNF26 3'UTR 0.32 TCGA-MA-AA42-01 11 123814154 123814154 C T OR6T1 Missense_Mutation p.R131H 0.22 tolerated(0.53) benign(0.003) TCGA-MA-AA42-01 11 124267074 124267074 T C OR8B3 Silent p.P58P 0.08 TCGA-MA-AA42-01 11 12549484 12549484 G A PARVA 3'UTR 0.12 TCGA-MA-AA42-01 11 14278166 14278166 G A SPON1 RNA 0.27 TCGA-MA-AA42-01 11 1501988 1501988 C T MOB2 Missense_Mutation p.E80K 0.19 tolerated(0.07) possibly_damaging(0.849) TCGA-MA-AA42-01 11 18501943 18501944 TT - TSG101 3'UTR 0.15 TCGA-MA-AA42-01 11 18722589 18722589 G A TMEM86A Missense_Mutation p.C44Y 0.31 deleterious(0) probably_damaging(0.989) TCGA-MA-AA42-01 11 18956092 18956092 A C MRGPRX1 Silent p.L80L 0.11 TCGA-MA-AA42-01 11 22391616 22391616 C A SLC17A6 Missense_Mutation p.T308K 0.12 deleterious(0) benign(0.426) TCGA-MA-AA42-01 11 34500495 34500495 A T ELF5 3'UTR 0.09 TCGA-MA-AA42-01 11 35274845 35274845 T C SLC1A2 3'UTR 0.30 TCGA-MA-AA42-01 11 420528 420528 C T ANO9 Missense_Mutation p.R574H 0.29 tolerated(0.1) probably_damaging(0.976) TCGA-MA-AA42-01 11 4411520 4411520 G A TRIM21 Silent p.I40I 0.14 TCGA-MA-AA42-01 11 45928463 45928463 G A C11orf94 Silent p.S44S 0.16 TCGA-MA-AA42-01 11 48347265 48347265 G A OR4C3 Missense_Mutation p.R258K 0.07 tolerated(0.06) probably_damaging(0.995) TCGA-MA-AA42-01 11 49831500 49831500 G A RP11-707M1.1 RNA 0.30 TCGA-MA-AA42-01 11 5173365 5173365 T C OR52A1 Missense_Mutation p.I79V 0.17 tolerated(0.07) benign(0.011) TCGA-MA-AA42-01 11 55339694 55339694 C T OR4C16 Missense_Mutation p.R31C 0.24 deleterious(0.05) benign(0.008) TCGA-MA-AA42-01 11 556558 556558 C T C11orf35 Missense_Mutation p.G336D 0.14 tolerated(0.11) benign(0.15) TCGA-MA-AA42-01 11 55999927 55999927 G A OR5T2 Silent p.I245I 0.27 TCGA-MA-AA42-01 11 58959669 58959669 C T DTX4 Silent p.C440C 0.25 TCGA-MA-AA42-01 11 60285652 60285652 T A MS4A13 Silent p.T32T 0.27 TCGA-MA-AA42-01 11 60620695 60620695 G A PTGDR2 Silent p.F167F 0.14 TCGA-MA-AA42-01 11 6220812 6220812 T - OR52W1 Frame_Shift_Del p.L121Wfs*11 0.21 TCGA-MA-AA42-01 11 62298450 62298450 C T AHNAK Missense_Mutation p.D1147N 0.24 probably_damaging(0.998) TCGA-MA-AA42-01 11 62571011 62571012 - C NXF1 Frame_Shift_Ins p.D84* 0.19 TCGA-MA-AA42-01 11 6281245 6281245 C G CCKBR Silent p.L29L 0.08 TCGA-MA-AA42-01 11 64571044 64571044 A - MEN1 3'UTR 0.20 TCGA-MA-AA42-01 11 64597126 64597126 C - CDC42BPG Frame_Shift_Del p.A1262Pfs*68 0.17 TCGA-MA-AA42-01 11 65383814 65383815 - G PCNXL3 Frame_Shift_Ins p.V13Gfs*74 0.15 TCGA-MA-AA42-01 11 6652993 6652993 A G DCHS1 Missense_Mutation p.Y1177H 0.29 tolerated(0.4) benign(0.114) TCGA-MA-AA42-01 11 6653505 6653505 C A DCHS1 Missense_Mutation p.A1080S 0.33 tolerated(0.34) benign(0.099) TCGA-MA-AA42-01 11 69625165 69625165 G A FGF3 Missense_Mutation p.R210W 0.12 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-MA-AA42-01 11 71249821 71249821 C T KRTAP5-8 3'UTR 0.19 TCGA-MA-AA42-01 11 73598439 73598439 T C PAAF1 Silent p.I43I 0.08 TCGA-MA-AA42-01 11 73965492 73965492 T C PPME1 3'UTR 0.42 TCGA-MA-AA42-01 11 76751673 76751673 G A B3GNT6 Missense_Mutation p.A360T 0.44 tolerated(0.31) benign(0.047) TCGA-MA-AA42-01 11 76877119 76877119 C T MYO7A Nonsense_Mutation p.R570* 0.13 TCGA-MA-AA42-01 11 799455 799455 C T PIDD Missense_Mutation p.R862Q 0.14 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 11 85692174 85692174 T C PICALM Missense_Mutation p.M593V 0.29 tolerated(0.34) benign(0.001) TCGA-MA-AA42-01 11 88300607 88300607 T A GRM5 Silent p.G748G 0.17 TCGA-MA-AA42-01 11 9462155 9462155 A C IPO7 Missense_Mutation p.D950A 0.06 deleterious(0) possibly_damaging(0.78) TCGA-MA-AA42-01 11 94759058 94759058 C T KDM4E Nonsense_Mutation p.Q113* 0.33 TCGA-MA-AA42-01 12 102155121 102155121 G A GNPTAB Silent p.F973F 0.24 TCGA-MA-AA42-01 12 104474551 104474551 C A HCFC2 Missense_Mutation p.T237N 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-MA-AA42-01 12 112219775 112219775 C T ALDH2 Silent p.T56T 0.15 TCGA-MA-AA42-01 12 113607708 113607708 G A DDX54 Silent p.G427G 0.12 TCGA-MA-AA42-01 12 113733888 113733888 G A TPCN1 3'UTR 0.27 TCGA-MA-AA42-01 12 117014154 117014154 T - MAP1LC3B2 3'UTR 0.11 TCGA-MA-AA42-01 12 119937967 119937967 G A CCDC60 Silent p.A214A 0.21 TCGA-MA-AA42-01 12 122248600 122248600 C T SETD1B Silent p.D583D 0.16 TCGA-MA-AA42-01 12 123187646 123187646 C T HCAR2 Missense_Mutation p.S62N 0.13 tolerated(0.23) possibly_damaging(0.456) TCGA-MA-AA42-01 12 123813302 123813302 G A SBNO1 Silent p.C425C 0.09 TCGA-MA-AA42-01 12 125509994 125509994 G A BRI3BP 3'UTR 0.27 TCGA-MA-AA42-01 12 12976152 12976152 C T DDX47 Nonsense_Mutation p.R217* 0.24 TCGA-MA-AA42-01 12 132537744 132537744 C T EP400 Missense_Mutation p.A2483V 0.27 unknown(0) TCGA-MA-AA42-01 12 133306265 133306265 C T ANKLE2 Missense_Mutation p.G828E 0.37 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 12 21926464 21926464 G A KCNJ8 Silent p.D29D 0.28 TCGA-MA-AA42-01 12 29670366 29670367 - A TMTC1 Frame_Shift_Ins p.L721Ffs*17 0.19 TCGA-MA-AA42-01 12 29908764 29908764 G A TMTC1 Silent p.F203F 0.10 TCGA-MA-AA42-01 12 32520631 32520631 C T BICD1 Missense_Mutation p.P931L 0.13 tolerated_low_confidence(0.06) benign(0.173) TCGA-MA-AA42-01 12 393500 393500 T A KDM5A 3'UTR 0.11 TCGA-MA-AA42-01 12 393632 393632 C T KDM5A 3'UTR 0.24 TCGA-MA-AA42-01 12 420087 420087 C T KDM5A Silent p.T1060T 0.10 TCGA-MA-AA42-01 12 49361764 49361764 G A WNT10B Nonsense_Mutation p.R226* 0.08 TCGA-MA-AA42-01 12 49390522 49390522 C T DDN 3'UTR 0.16 TCGA-MA-AA42-01 12 49523121 49523121 G T TUBA1B Silent p.I93I 0.40 TCGA-MA-AA42-01 12 52685222 52685222 G A KRT81 Missense_Mutation p.R10C 0.14 deleterious(0) possibly_damaging(0.587) TCGA-MA-AA42-01 12 53552447 53552447 G A CSAD Missense_Mutation p.R471C 0.26 deleterious(0) probably_damaging(0.938) TCGA-MA-AA42-01 12 53684775 53684775 C A ESPL1 Missense_Mutation p.L1839M 0.26 deleterious(0) probably_damaging(0.996) TCGA-MA-AA42-01 12 56087888 56087888 G C ITGA7 Missense_Mutation p.L822V 0.16 tolerated(1) probably_damaging(0.967) TCGA-MA-AA42-01 12 5722099 5722099 C T ANO2 Missense_Mutation p.V652I 0.20 tolerated(0.1) possibly_damaging(0.707) TCGA-MA-AA42-01 12 57348933 57348933 A G RDH16 Missense_Mutation p.V110A 0.20 deleterious(0.01) probably_damaging(0.973) TCGA-MA-AA42-01 12 62799421 62799421 A G USP15 3'UTR 0.17 TCGA-MA-AA42-01 12 63977675 63977675 A - DPY19L2 Intron 0.18 TCGA-MA-AA42-01 12 6933422 6933422 C T GPR162 Missense_Mutation p.R120C 0.24 deleterious(0.05) probably_damaging(0.994) TCGA-MA-AA42-01 12 7022078 7022078 G A LRRC23 Missense_Mutation p.A315T 0.22 deleterious(0) probably_damaging(0.998) TCGA-MA-AA42-01 12 70965676 70965676 G A PTPRB Missense_Mutation p.R1012W 0.07 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 12 75601605 75601606 - T KCNC2 Frame_Shift_Ins p.L54Afs*199 0.29 TCGA-MA-AA42-01 12 77246327 77246327 T C ZDHHC17 3'UTR 0.14 TCGA-MA-AA42-01 12 96051638 96051639 - AT NTN4 3'UTR 0.16 TCGA-MA-AA42-01 13 100199266 100199266 C T TM9SF2 Missense_Mutation p.P393L 0.32 deleterious(0.02) probably_damaging(0.982) TCGA-MA-AA42-01 13 111080921 111080921 C T COL4A2 Silent p.T156T 0.25 TCGA-MA-AA42-01 13 113487243 113487243 G A ATP11A Missense_Mutation p.V489I 0.21 tolerated(0.24) benign(0.003) TCGA-MA-AA42-01 13 114783699 114783699 C T RASA3 Silent p.L324L 0.13 TCGA-MA-AA42-01 13 32709249 32709249 T C FRY Missense_Mutation p.C336R 0.22 deleterious(0) probably_damaging(0.985) TCGA-MA-AA42-01 13 33096333 33096333 G A N4BP2L2 Missense_Mutation p.P58S 0.21 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 13 36428682 36428682 G A DCLK1 Missense_Mutation p.S330L 0.24 deleterious(0.02) possibly_damaging(0.519) TCGA-MA-AA42-01 13 79175492 79175492 C T POU4F1 3'UTR 0.23 TCGA-MA-AA42-01 13 86368617 86368617 G A SLITRK6 Missense_Mutation p.S676L 0.30 tolerated(0.2) benign(0.031) TCGA-MA-AA42-01 13 92051446 92051446 C T GPC5 Missense_Mutation p.P49L 0.34 deleterious(0.02) probably_damaging(0.932) TCGA-MA-AA42-01 13 98044019 98044019 T C MBNL2 3'UTR 0.11 TCGA-MA-AA42-01 13 98671962 98671962 C T IPO5 Silent p.N1006N 0.22 TCGA-MA-AA42-01 14 100803488 100803488 G T WARS Missense_Mutation p.Q389K 0.14 tolerated(0.99) benign(0.001) TCGA-MA-AA42-01 14 105398493 105398493 G A PLD4 Silent p.A401A 0.26 TCGA-MA-AA42-01 14 21570829 21570829 C T TMEM253 Missense_Mutation p.A142V 0.17 tolerated(0.35) benign(0.037) TCGA-MA-AA42-01 14 22772397 22772397 C T TRAV39 Missense_Mutation p.A97V 0.10 tolerated(0.53) benign(0.007) TCGA-MA-AA42-01 14 24523481 24523481 C T LRRC16B Missense_Mutation p.R73C 0.35 deleterious(0) probably_damaging(0.988) TCGA-MA-AA42-01 14 38281549 38281549 C T TTC6 Missense_Mutation p.L1534F 0.69 deleterious(0.02) probably_damaging(1) TCGA-MA-AA42-01 14 52734725 52734726 GT - PTGDR Frame_Shift_Del p.C66Wfs*225 0.37 TCGA-MA-AA42-01 14 64682064 64682064 C T SYNE2 Missense_Mutation p.A6465V 0.23 probably_damaging(0.999) TCGA-MA-AA42-01 14 65253709 65253709 C T SPTB Missense_Mutation p.A992T 0.17 tolerated(0.43) benign(0.104) TCGA-MA-AA42-01 14 70712582 70712582 A G ADAM21P1 RNA 0.43 TCGA-MA-AA42-01 14 72054816 72054816 T C SIPA1L1 Missense_Mutation p.V76A 0.53 deleterious(0) probably_damaging(0.97) TCGA-MA-AA42-01 14 79423656 79423656 C T NRXN3 Missense_Mutation p.R410W 0.12 deleterious(0) probably_damaging(0.998) TCGA-MA-AA42-01 14 90085391 90085391 C T FOXN3 5'UTR 0.22 TCGA-MA-AA42-01 14 95080754 95080754 G T SERPINA3 5'UTR 0.26 TCGA-MA-AA42-01 15 23889358 23889358 C T MAGEL2 Missense_Mutation p.A575T 0.11 tolerated(0.13) possibly_damaging(0.448) TCGA-MA-AA42-01 15 24927631 24927631 A G NPAP1 3'UTR 0.12 TCGA-MA-AA42-01 15 45248923 45248923 C G C15orf43 Missense_Mutation p.Q3E 0.17 deleterious(0.04) benign(0.053) TCGA-MA-AA42-01 15 55611483 55611484 - G PIGB Frame_Shift_Ins p.G15Rfs*72 0.13 TCGA-MA-AA42-01 15 64426932 64426932 C T SNX1 Missense_Mutation p.R431W 0.27 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 15 65674416 65674417 - T IGDCC4 3'UTR 0.27 TCGA-MA-AA42-01 15 67713775 67713775 G A IQCH Missense_Mutation p.V789M 0.09 tolerated(0.57) benign(0.005) TCGA-MA-AA42-01 15 68603349 68603349 G A ITGA11 Missense_Mutation p.R1053C 0.22 tolerated(0.09) benign(0.01) TCGA-MA-AA42-01 15 74622588 74622588 G A CCDC33 Missense_Mutation p.R450Q 0.24 deleterious(0.04) benign(0) TCGA-MA-AA42-01 15 75595045 75595045 G T DNM1P34 RNA 0.30 TCGA-MA-AA42-01 15 76632833 76632833 G A ISL2 Missense_Mutation p.R243H 0.36 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 15 80430056 80430056 G C ZFAND6 3'UTR 0.46 TCGA-MA-AA42-01 15 81664939 81664939 C A TMC3 Missense_Mutation p.A77S 0.25 tolerated(0.12) benign(0.058) TCGA-MA-AA42-01 15 83395497 83395497 G A AC105339.2 5'Flank 0.21 TCGA-MA-AA42-01 15 85089473 85089474 - TCT UBE2Q2P1 RNA 0.31 TCGA-MA-AA42-01 15 85165317 85165317 C T ZSCAN2 3'UTR 0.35 TCGA-MA-AA42-01 15 89381958 89381958 C T ACAN Silent p.T45T 0.30 TCGA-MA-AA42-01 15 90276385 90276385 C T WDR93 Silent p.D493D 0.23 TCGA-MA-AA42-01 15 91337550 91337550 A G BLM Missense_Mutation p.H1058R 0.45 deleterious(0) benign(0.019) TCGA-MA-AA42-01 15 91352485 91352485 G A BLM Silent p.S1290S 0.42 TCGA-MA-AA42-01 15 94841587 94841587 C T MCTP2 Silent p.N31N 0.21 TCGA-MA-AA42-01 15 96877685 96877685 C A NR2F2 Missense_Mutation p.L275M 0.35 tolerated(0.12) probably_damaging(0.985) TCGA-MA-AA42-01 16 11643349 11643349 C T LITAF 3'UTR 0.18 TCGA-MA-AA42-01 16 12136865 12136865 G A SNX29 Missense_Mutation p.R120H 0.08 deleterious(0) possibly_damaging(0.878) TCGA-MA-AA42-01 16 14041702 14041702 G A ERCC4 Missense_Mutation p.R750H 0.16 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 16 20488726 20488726 C T ACSM2A Silent p.I378I 0.36 TCGA-MA-AA42-01 16 20781411 20781411 C A ACSM3 Missense_Mutation p.L19I 0.09 tolerated(0.08) benign(0.103) TCGA-MA-AA42-01 16 22337243 22337243 G A POLR3E Missense_Mutation p.E504K 0.42 tolerated(0.64) benign(0.029) TCGA-MA-AA42-01 16 23504736 23504736 C A GGA2 Missense_Mutation p.S99I 0.31 deleterious(0.01) possibly_damaging(0.695) TCGA-MA-AA42-01 16 2511091 2511091 G A C16orf59 Silent p.L157L 0.34 TCGA-MA-AA42-01 16 27692806 27692806 C - KIAA0556 Frame_Shift_Del p.Q300Kfs*136 0.10 TCGA-MA-AA42-01 16 277632 277632 T C LUC7L Intron 0.21 TCGA-MA-AA42-01 16 28992903 28992903 C A SPNS1 Nonsense_Mutation p.S259* 0.22 TCGA-MA-AA42-01 16 29872660 29872660 G A CDIPT Intron 0.12 TCGA-MA-AA42-01 16 30793160 30793160 C T ZNF629 Missense_Mutation p.G830E 0.23 tolerated(0.62) benign(0.003) TCGA-MA-AA42-01 16 3119442 3119442 G A IL32 3'UTR 0.10 TCGA-MA-AA42-01 16 3139756 3139756 G A ZSCAN10 Missense_Mutation p.T505M 0.23 deleterious(0) probably_damaging(0.94) TCGA-MA-AA42-01 16 3304671 3304671 G A MEFV Missense_Mutation p.R133W 0.40 deleterious(0.01) benign(0.025) TCGA-MA-AA42-01 16 3535675 3535675 G A NAA60 3'UTR 0.17 TCGA-MA-AA42-01 16 3713495 3713497 CTT - TRAP1 In_Frame_Del p.K546del 0.26 TCGA-MA-AA42-01 16 3781375 3781375 G A CREBBP Missense_Mutation p.R1664C 0.50 unknown(0) TCGA-MA-AA42-01 16 3786681 3786681 C T CREBBP Silent p.A1510A 0.17 TCGA-MA-AA42-01 16 53524097 53524097 G C RBL2 Missense_Mutation p.R1102T 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-MA-AA42-01 16 55846943 55846943 G T CES1 Missense_Mutation p.L320M 0.17 tolerated(0.08) benign(0.29) TCGA-MA-AA42-01 16 56995963 56995963 C T CETP Silent p.H24H 0.33 TCGA-MA-AA42-01 16 57088736 57088736 A T NLRC5 Nonsense_Mutation p.K1194* 0.11 TCGA-MA-AA42-01 16 57286726 57286726 C T ARL2BP 3'UTR 0.30 TCGA-MA-AA42-01 16 67671897 67671897 G A CTCF 3'UTR 0.28 TCGA-MA-AA42-01 16 70304184 70304184 A C AARS Missense_Mutation p.L244R 0.11 deleterious(0) probably_damaging(0.979) TCGA-MA-AA42-01 16 71890723 71890723 A G ATXN1L 3'UTR 0.28 TCGA-MA-AA42-01 16 72001178 72001178 C T PKD1L3 RNA 0.37 TCGA-MA-AA42-01 16 72032221 72032221 G A PKD1L3 RNA 0.33 TCGA-MA-AA42-01 16 72822740 72822740 C T ZFHX3 Silent p.T3145T 0.24 TCGA-MA-AA42-01 16 82131987 82131987 C T HSD17B2 Silent p.D370D 0.28 TCGA-MA-AA42-01 16 84212645 84212645 A G TAF1C Missense_Mutation p.S838P 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-MA-AA42-01 16 88801448 88801448 C T PIEZO1 Silent p.T561T 0.11 TCGA-MA-AA42-01 17 10299994 10299994 A G MYH8 Silent p.A1468A 0.24 TCGA-MA-AA42-01 17 12044613 12044613 G A MAP2K4 3'UTR 0.24 TCGA-MA-AA42-01 17 12883531 12883531 T C ARHGAP44 Silent p.S640S 0.07 TCGA-MA-AA42-01 17 1401323 1401323 C T INPP5K Silent p.A290A 0.19 TCGA-MA-AA42-01 17 1630984 1630984 G A WDR81 Missense_Mutation p.A911T 0.10 tolerated(0.56) benign(0.006) TCGA-MA-AA42-01 17 17163687 17163687 G A COPS3 Silent p.R288R 0.13 TCGA-MA-AA42-01 17 18023051 18023051 G A MYO15A Missense_Mutation p.E313K 0.30 benign(0.305) TCGA-MA-AA42-01 17 18863891 18863891 C T SLC5A10 Missense_Mutation p.R127C 0.28 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 17 21911537 21911537 C T RP11-744K17.9 RNA 0.18 TCGA-MA-AA42-01 17 29220764 29220766 AAC - ATAD5 In_Frame_Del p.T1633del 0.16 TCGA-MA-AA42-01 17 32483464 32483464 G A ASIC2 Missense_Mutation p.R30C 0.33 deleterious(0.04) probably_damaging(0.953) TCGA-MA-AA42-01 17 33902741 33902741 A G PEX12 3'UTR 0.25 TCGA-MA-AA42-01 17 3392548 3392548 G T ASPA Missense_Mutation p.Q182H 0.25 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 17 34964407 34964407 G A MRM1 Missense_Mutation p.R281H 0.30 deleterious(0.04) possibly_damaging(0.763) TCGA-MA-AA42-01 17 36522219 36522219 C T SOCS7 Silent p.S370S 0.19 TCGA-MA-AA42-01 17 36523902 36523902 C G SOCS7 Missense_Mutation p.I443M 0.56 tolerated(0.07) possibly_damaging(0.884) TCGA-MA-AA42-01 17 38031660 38031660 C G ZPBP2 Missense_Mutation p.L288V 0.38 tolerated(1) benign(0.088) TCGA-MA-AA42-01 17 38251890 38251890 T C NR1D1 Missense_Mutation p.N352S 0.32 tolerated(0.27) benign(0) TCGA-MA-AA42-01 17 40766994 40766994 C T TUBG1 Missense_Mutation p.L431F 0.31 deleterious(0) probably_damaging(0.969) TCGA-MA-AA42-01 17 41007587 41007587 A T AOC3 Silent p.G671G 0.20 TCGA-MA-AA42-01 17 44103477 44103477 G A MAPT 3'UTR 0.25 TCGA-MA-AA42-01 17 45608792 45608792 C T NPEPPS Silent p.L42L 0.32 TCGA-MA-AA42-01 17 45891123 45891123 C T OSBPL7 Missense_Mutation p.V477M 0.29 deleterious(0) probably_damaging(0.967) TCGA-MA-AA42-01 17 46894449 46894449 C - TTLL6 5'UTR 0.15 TCGA-MA-AA42-01 17 48557385 48557385 G A RSAD1 Silent p.P138P 0.17 TCGA-MA-AA42-01 17 4997832 4997832 T G ZFP3 3'UTR 0.19 TCGA-MA-AA42-01 17 54672688 54672688 G - NOG 3'UTR 0.13 TCGA-MA-AA42-01 17 56274410 56274410 G A EPX Silent p.A304A 0.30 TCGA-MA-AA42-01 17 59947298 59947298 C T INTS2 Missense_Mutation p.E952K 0.15 tolerated(0.14) benign(0.083) TCGA-MA-AA42-01 17 61775406 61775406 C T LIMD2 3'UTR 0.33 TCGA-MA-AA42-01 17 62125330 62125330 C T ERN1 Missense_Mutation p.R806H 0.16 tolerated(0.07) benign(0.017) TCGA-MA-AA42-01 17 72277972 72277972 G A DNAI2 Missense_Mutation p.V6M 0.12 deleterious(0.04) benign(0.326) TCGA-MA-AA42-01 17 74943911 74943911 G T MGAT5B Splice_Site p.X651_splice 0.32 TCGA-MA-AA42-01 17 78970862 78970862 A C CHMP6 Missense_Mutation p.E135A 0.32 tolerated(0.4) benign(0.204) TCGA-MA-AA42-01 17 79428724 79428724 G A RP11-1055B8.7 Silent p.S2345S 0.08 TCGA-MA-AA42-01 17 7946184 7946184 C T ALOX15B Missense_Mutation p.R220W 0.17 tolerated(0.17) benign(0.009) TCGA-MA-AA42-01 17 79477690 79477690 A G ACTG1 3'UTR 0.32 TCGA-MA-AA42-01 17 7950972 7950972 G A ALOX15B Missense_Mutation p.S557N 0.44 tolerated(1) benign(0.086) TCGA-MA-AA42-01 17 79826014 79826014 G C ARHGDIA 3'UTR 0.19 TCGA-MA-AA42-01 17 79872276 79872276 A G SIRT7 Missense_Mutation p.V237A 0.36 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 17 80401527 80401527 C T C17orf62 3'UTR 0.26 TCGA-MA-AA42-01 17 80684783 80684783 C T FN3KRP Silent p.N222N 0.09 TCGA-MA-AA42-01 17 9675006 9675006 G C DHRS7C Missense_Mutation p.F246L 0.31 tolerated(0.64) benign(0.01) TCGA-MA-AA42-01 18 12254422 12254422 C T CIDEA Splice_Site p.X13_splice 0.42 TCGA-MA-AA42-01 18 21478981 21478981 G A LAMA3 Missense_Mutation p.A1930T 0.30 benign(0.179) TCGA-MA-AA42-01 18 28666645 28666645 C T DSC2 Missense_Mutation p.R279H 0.24 deleterious(0) probably_damaging(0.982) TCGA-MA-AA42-01 18 28916545 28916545 C A DSG1 Missense_Mutation p.L412M 0.08 tolerated(0.09) benign(0.103) TCGA-MA-AA42-01 18 33291285 33291285 C T GALNT1 3'UTR 0.26 TCGA-MA-AA42-01 18 34647185 34647185 T C KIAA1328 Silent p.S303S 0.15 TCGA-MA-AA42-01 18 42281428 42281428 C A SETBP1 Silent p.L39L 0.29 TCGA-MA-AA42-01 18 48604665 48604665 G A SMAD4 Missense_Mutation p.R496H 0.11 deleterious(0) probably_damaging(0.997) TCGA-MA-AA42-01 18 50683800 50683800 C T DCC Missense_Mutation p.R446C 0.15 deleterious(0) probably_damaging(0.969) TCGA-MA-AA42-01 18 50994284 50994284 G C DCC Missense_Mutation p.G1214R 0.09 deleterious(0.03) benign(0.189) TCGA-MA-AA42-01 18 56008926 56008926 C T NEDD4L Missense_Mutation p.A425V 0.27 tolerated(0.45) benign(0.007) TCGA-MA-AA42-01 18 56202375 56202375 T C ALPK2 Missense_Mutation p.K1682E 0.22 tolerated(0.4) benign(0.004) TCGA-MA-AA42-01 18 67996024 67996024 G T SOCS6 3'UTR 0.16 TCGA-MA-AA42-01 18 8796386 8796386 G A SOGA2 Missense_Mutation p.V723I 0.15 tolerated(0.1) benign(0.026) TCGA-MA-AA42-01 19 10218663 10218665 CTC - PPAN In_Frame_Del p.S124del 0.19 TCGA-MA-AA42-01 19 10461603 10461603 G T TYK2 Silent p.S1157S 0.19 TCGA-MA-AA42-01 19 10502360 10502360 C T CDC37 Missense_Mutation p.R335H 0.22 deleterious(0) probably_damaging(0.982) TCGA-MA-AA42-01 19 12805637 12805637 G A FBXW9 Silent p.S175S 0.19 TCGA-MA-AA42-01 19 12903868 12903872 AATAT - JUNB 3'UTR 0.27 TCGA-MA-AA42-01 19 12986870 12986870 C T DNASE2 Silent p.P339P 0.27 TCGA-MA-AA42-01 19 14001057 14001057 T C C19orf57 Silent p.S204S 0.11 TCGA-MA-AA42-01 19 14024282 14024282 G A CC2D1A Silent p.P193P 0.29 TCGA-MA-AA42-01 19 14294372 14294372 C T LPHN1 Missense_Mutation p.A15T 0.17 tolerated(0.31) benign(0) TCGA-MA-AA42-01 19 15375284 15375284 G A BRD4 Silent p.D381D 0.16 TCGA-MA-AA42-01 19 17683316 17683318 AGG - COLGALT1 In_Frame_Del p.E287del 0.22 TCGA-MA-AA42-01 19 18053578 18053578 G A CCDC124 Silent p.T91T 0.12 TCGA-MA-AA42-01 19 19362953 19362953 G T NCAN 3'UTR 0.18 TCGA-MA-AA42-01 19 19906251 19906251 C A ZNF506 Nonsense_Mutation p.E149* 0.27 TCGA-MA-AA42-01 19 2078440 2078440 G A MOB3A Silent p.N40N 0.31 TCGA-MA-AA42-01 19 21909450 21909450 G A ZNF100 3'UTR 0.27 TCGA-MA-AA42-01 19 21910344 21910344 C T ZNF100 Missense_Mutation p.G257E 0.31 tolerated(0.17) benign(0.245) TCGA-MA-AA42-01 19 21934388 21934388 G A ZNF100 Intron 0.07 TCGA-MA-AA42-01 19 21992410 21992410 G A ZNF43 Silent p.S143S 0.10 TCGA-MA-AA42-01 19 22939834 22939834 C T ZNF99 3'Flank 0.26 TCGA-MA-AA42-01 19 23543076 23543076 C A ZNF91 Missense_Mutation p.R902I 0.18 tolerated(0.13) benign(0.011) TCGA-MA-AA42-01 19 2643289 2643289 G A GNG7 Intron 0.07 TCGA-MA-AA42-01 19 2716774 2716774 C - DIRAS1 3'UTR 0.20 TCGA-MA-AA42-01 19 30935795 30935795 C A ZNF536 Missense_Mutation p.D442E 0.26 tolerated(0.16) probably_damaging(0.99) TCGA-MA-AA42-01 19 3119326 3119326 G A GNA11 Silent p.S286S 0.27 TCGA-MA-AA42-01 19 3157747 3157747 G A GNA15 Missense_Mutation p.A256T 0.23 tolerated(0.29) benign(0.185) TCGA-MA-AA42-01 19 35757351 35757351 C - LSR Frame_Shift_Del p.P339Hfs*4 0.20 TCGA-MA-AA42-01 19 36245198 36245198 C T LIN37 Missense_Mutation p.R213C 0.17 deleterious(0) probably_damaging(0.928) TCGA-MA-AA42-01 19 36333334 36333334 A G NPHS1 Missense_Mutation p.V818A 0.12 tolerated(0.48) benign(0.035) TCGA-MA-AA42-01 19 36590373 36590373 G A WDR62 Missense_Mutation p.A865T 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-MA-AA42-01 19 38229388 38229388 C T ZNF573 3'UTR 0.09 TCGA-MA-AA42-01 19 3834842 3834842 C T ZFR2 Missense_Mutation p.G65S 0.18 tolerated(0.54) benign(0.001) TCGA-MA-AA42-01 19 39881528 39881528 G A PAF1 5'UTR 0.26 TCGA-MA-AA42-01 19 4033111 4033111 G C PIAS4 Silent p.L307L 0.21 TCGA-MA-AA42-01 19 40366143 40366143 G A FCGBP Silent p.D4697D 0.16 TCGA-MA-AA42-01 19 40433927 40433928 AT - FCGBP Frame_Shift_Del p.Y114Cfs*12 0.17 TCGA-MA-AA42-01 19 40929228 40929228 G A SERTAD1 Missense_Mutation p.R76C 0.24 deleterious(0) probably_damaging(0.966) TCGA-MA-AA42-01 19 41115460 41115460 G A LTBP4 Missense_Mutation p.R551H 0.32 deleterious(0.03) probably_damaging(0.984) TCGA-MA-AA42-01 19 41120351 41120351 C T LTBP4 Silent p.D1004D 0.21 TCGA-MA-AA42-01 19 41292840 41292840 C T RAB4B Missense_Mutation p.A205V 0.22 deleterious(0.04) benign(0.003) TCGA-MA-AA42-01 19 41826339 41826339 G A CCDC97 Missense_Mutation p.R292H 0.35 tolerated(0.18) benign(0.042) TCGA-MA-AA42-01 19 41939481 41939481 C T ATP5SL Missense_Mutation p.G138S 0.72 tolerated(1) benign(0.002) TCGA-MA-AA42-01 19 42863395 42863395 G A MEGF8 Splice_Site p.X1763_splice 0.41 TCGA-MA-AA42-01 19 43093117 43093117 G T CEACAM8 Nonsense_Mutation p.C259* 0.15 TCGA-MA-AA42-01 19 43983597 43983597 C T PHLDB3 Missense_Mutation p.R545H 0.16 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 19 44833579 44833579 G C ZNF112 Nonsense_Mutation p.S250* 0.50 TCGA-MA-AA42-01 19 4538699 4538699 G C LRG1 Silent p.L99L 0.17 TCGA-MA-AA42-01 19 45978374 45978374 C T FOSB 3'UTR 0.64 TCGA-MA-AA42-01 19 47504099 47504099 G A ARHGAP35 3'UTR 0.33 TCGA-MA-AA42-01 19 48284630 48284630 C T SEPW1 3'UTR 0.76 TCGA-MA-AA42-01 19 48917662 48917662 C G GRIN2D Silent p.L411L 0.10 TCGA-MA-AA42-01 19 49106908 49106908 C A FAM83E Missense_Mutation p.R340L 0.14 deleterious(0.01) benign(0.198) TCGA-MA-AA42-01 19 49424449 49424449 G A NUCB1 Silent p.L347L 0.24 TCGA-MA-AA42-01 19 50492941 50492941 C T VRK3 Missense_Mutation p.E351K 0.17 deleterious(0) possibly_damaging(0.771) TCGA-MA-AA42-01 19 51190047 51190047 C T SHANK1 Silent p.P804P 0.23 TCGA-MA-AA42-01 19 51391245 51391245 A G KLKP1 RNA 0.23 TCGA-MA-AA42-01 19 51391246 51391246 T A KLKP1 RNA 0.21 TCGA-MA-AA42-01 19 51650107 51650107 T C SIGLEC7 Missense_Mutation p.V375A 0.44 tolerated(0.61) benign(0.01) TCGA-MA-AA42-01 19 51871827 51871827 C A CLDND2 Missense_Mutation p.G2V 0.32 deleterious(0) probably_damaging(0.972) TCGA-MA-AA42-01 19 52954636 52954636 C T ZNF578 5'Flank 0.14 TCGA-MA-AA42-01 19 53668649 53668649 C T ZNF665 Missense_Mutation p.R365Q 0.15 tolerated(1) benign(0.006) TCGA-MA-AA42-01 19 53886014 53886014 G T ZNF525 3'UTR 0.44 TCGA-MA-AA42-01 19 55145445 55145446 - C LILRB1 Frame_Shift_Ins p.T448Hfs*54 0.12 TCGA-MA-AA42-01 19 55790940 55790940 G - HSPBP1 Frame_Shift_Del p.L13Wfs*55 0.24 TCGA-MA-AA42-01 19 56089418 56089418 C A ZNF579 Missense_Mutation p.A530S 0.14 tolerated(0.14) probably_damaging(0.964) TCGA-MA-AA42-01 19 56104936 56104936 C T FIZ1 Missense_Mutation p.R124H 0.18 tolerated(0.05) possibly_damaging(0.522) TCGA-MA-AA42-01 19 56363415 56363415 C G NLRP4 5'UTR 0.16 TCGA-MA-AA42-01 19 5784072 5784072 C T PRR22 Intron 0.56 TCGA-MA-AA42-01 19 58549133 58549133 C T ZSCAN1 5'UTR 0.23 TCGA-MA-AA42-01 19 59028511 59028511 G A ZBTB45 Missense_Mutation p.A177V 0.19 tolerated(1) probably_damaging(0.986) TCGA-MA-AA42-01 19 5903849 5903849 G A VMAC 5'Flank 0.33 TCGA-MA-AA42-01 19 6374925 6374925 C T ALKBH7 Missense_Mutation p.R203C 0.07 deleterious(0) probably_damaging(0.998) TCGA-MA-AA42-01 19 6433667 6433667 G A SLC25A41 Missense_Mutation p.S13F 0.38 deleterious_low_confidence(0.01) benign(0.216) TCGA-MA-AA42-01 19 7122937 7122937 G A INSR Missense_Mutation p.H1108Y 0.29 deleterious(0) probably_damaging(0.98) TCGA-MA-AA42-01 19 7448091 7448091 T G CTD-2207O23.3 Splice_Site p.X92_splice 0.14 TCGA-MA-AA42-01 19 7992124 7992124 G A TIMM44 Missense_Mutation p.A436V 0.12 tolerated(0.12) possibly_damaging(0.475) TCGA-MA-AA42-01 19 9204165 9204165 T G OR1M1 Missense_Mutation p.L82R 0.18 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 1 100660754 100660755 - A DBT 3'UTR 0.26 TCGA-MA-AA42-01 1 100661673 100661673 A G DBT 3'UTR 0.10 TCGA-MA-AA42-01 1 110294674 110294674 G A EPS8L3 Silent p.Y460Y 0.22 TCGA-MA-AA42-01 1 113232197 113232197 C T MOV10 Missense_Mutation p.L168F 0.24 tolerated(0.53) benign(0.004) TCGA-MA-AA42-01 1 117156481 117156481 G A IGSF3 Silent p.C246C 0.07 TCGA-MA-AA42-01 1 11734798 11734798 C T MAD2L2 3'UTR 0.23 TCGA-MA-AA42-01 1 120508163 120508163 C G NOTCH2 Missense_Mutation p.D532H 0.15 deleterious(0) probably_damaging(0.987) TCGA-MA-AA42-01 1 145592654 145592654 C - POLR3C 3'UTR 0.15 TCGA-MA-AA42-01 1 150238264 150238264 A - APH1A 3'UTR 0.11 TCGA-MA-AA42-01 1 150444893 150444893 G A RPRD2 Missense_Mutation p.G1157R 0.12 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-MA-AA42-01 1 151171511 151171511 T - PIP5K1A Frame_Shift_Del p.S15Hfs*50 0.10 TCGA-MA-AA42-01 1 151413498 151413498 C T POGZ Silent p.G63G 0.16 TCGA-MA-AA42-01 1 152187139 152187139 G A HRNR Silent p.S2322S 0.09 TCGA-MA-AA42-01 1 154218753 154218753 C T UBAP2L Nonsense_Mutation p.Q306* 0.23 TCGA-MA-AA42-01 1 154318811 154318811 C T ATP8B2 Silent p.G994G 0.17 TCGA-MA-AA42-01 1 154403059 154403059 G T IL6R Missense_Mutation p.K145N 0.24 deleterious(0.01) possibly_damaging(0.861) TCGA-MA-AA42-01 1 154935863 154935863 G - SHC1 3'UTR 0.16 TCGA-MA-AA42-01 1 154942847 154942847 G A SHC1 Silent p.D52D 0.06 TCGA-MA-AA42-01 1 155449852 155449852 C G ASH1L Missense_Mutation p.E937Q 0.32 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-MA-AA42-01 1 155935476 155935476 C T ARHGEF2 Missense_Mutation p.R139H 0.12 deleterious(0) probably_damaging(0.991) TCGA-MA-AA42-01 1 156146752 156146752 C T SEMA4A Silent p.D750D 0.19 TCGA-MA-AA42-01 1 156948022 156948022 G A ARHGEF11 Missense_Mutation p.R162C 0.27 deleterious(0.02) possibly_damaging(0.88) TCGA-MA-AA42-01 1 162825136 162825136 G A C1orf110 Missense_Mutation p.R110C 0.11 deleterious(0.02) benign(0.001) TCGA-MA-AA42-01 1 16376405 16376405 C T CLCNKB Missense_Mutation p.A321V 0.17 tolerated(0.13) possibly_damaging(0.689) TCGA-MA-AA42-01 1 16386058 16386058 C T FAM131C Missense_Mutation p.A165T 0.07 deleterious(0) benign(0.06) TCGA-MA-AA42-01 1 169816851 169816851 G A C1orf112 Silent p.S655S 0.08 TCGA-MA-AA42-01 1 171672557 171672557 G T VAMP4 3'UTR 0.27 TCGA-MA-AA42-01 1 173838144 173838145 - A ZBTB37 5'UTR 0.10 TCGA-MA-AA42-01 1 177934302 177934302 A G SEC16B Missense_Mutation p.V138A 0.10 tolerated(0.45) benign(0.033) TCGA-MA-AA42-01 1 180155277 180155277 G A QSOX1 Missense_Mutation p.R326H 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-MA-AA42-01 1 185069409 185069409 C T RNF2 Silent p.Y329Y 0.22 TCGA-MA-AA42-01 1 193117054 193117054 C T CDC73 Missense_Mutation p.R263C 0.16 deleterious(0) probably_damaging(0.959) TCGA-MA-AA42-01 1 201058557 201058557 C T CACNA1S Silent p.S243S 0.17 TCGA-MA-AA42-01 1 203098085 203098085 C T ADORA1 Missense_Mutation p.A39V 0.13 deleterious(0.01) benign(0.442) TCGA-MA-AA42-01 1 205043801 205043801 C T CNTN2 3'UTR 0.23 TCGA-MA-AA42-01 1 205628696 205628696 T C SLC45A3 Missense_Mutation p.N443S 0.38 tolerated(0.16) benign(0.001) TCGA-MA-AA42-01 1 205797816 205797816 A G PM20D1 Missense_Mutation p.F481L 0.40 deleterious(0) probably_damaging(0.998) TCGA-MA-AA42-01 1 206907245 206907245 G - MAPKAPK2 3'UTR 0.10 TCGA-MA-AA42-01 1 207644812 207644812 T A CR2 Missense_Mutation p.I513N 0.20 tolerated(0.08) benign(0.252) TCGA-MA-AA42-01 1 20809052 20809052 G A CAMK2N1 3'UTR 0.12 TCGA-MA-AA42-01 1 21071212 21071212 C G HP1BP3 3'UTR 0.22 TCGA-MA-AA42-01 1 21100060 21100060 T - HP1BP3 Frame_Shift_Del p.T132Qfs*13 0.20 TCGA-MA-AA42-01 1 214825174 214825174 G A CENPF Missense_Mutation p.R2702Q 0.15 benign(0) TCGA-MA-AA42-01 1 216420401 216420401 T C USH2A Missense_Mutation p.T779A 0.22 benign(0.033) TCGA-MA-AA42-01 1 222731974 222731974 A G TAF1A 3'UTR 0.11 TCGA-MA-AA42-01 1 225288464 225288464 A - DNAH14 Frame_Shift_Del p.I329* 0.15 TCGA-MA-AA42-01 1 225512494 225512494 C T DNAH14 Missense_Mutation p.A2482V 0.18 tolerated(0.05) possibly_damaging(0.694) TCGA-MA-AA42-01 1 226034803 226034803 G T TMEM63A Missense_Mutation p.P788T 0.15 tolerated(0.53) benign(0.05) TCGA-MA-AA42-01 1 226340079 226340079 G A ACBD3 Silent p.S444S 0.12 TCGA-MA-AA42-01 1 226566962 226566963 AG - PARP1 Frame_Shift_Del p.S542Cfs*22 0.13 TCGA-MA-AA42-01 1 227316823 227316823 T C CDC42BPA Silent p.R500R 0.31 TCGA-MA-AA42-01 1 228564858 228564858 C T OBSCN Silent p.R8672R 0.22 TCGA-MA-AA42-01 1 231471786 231471786 C T EXOC8 Missense_Mutation p.R569H 0.14 deleterious(0) probably_damaging(0.996) TCGA-MA-AA42-01 1 23660055 23660055 G A HNRNPR Missense_Mutation p.P152S 0.11 deleterious(0) probably_damaging(0.998) TCGA-MA-AA42-01 1 237656277 237656277 C G RYR2 Silent p.L617L 0.13 TCGA-MA-AA42-01 1 237951325 237951325 G C RYR2 Missense_Mutation p.D4456H 0.27 benign(0.074) TCGA-MA-AA42-01 1 240656473 240656473 G T GREM2 Nonsense_Mutation p.C101* 0.19 TCGA-MA-AA42-01 1 241798486 241798486 C G CHML Missense_Mutation p.D195H 0.16 tolerated(0.05) possibly_damaging(0.617) TCGA-MA-AA42-01 1 242287771 242287771 G A PLD5 Missense_Mutation p.S311L 0.16 deleterious(0) probably_damaging(0.978) TCGA-MA-AA42-01 1 243363871 243363871 C T CEP170 Missense_Mutation p.E149K 0.24 deleterious(0.01) benign(0.26) TCGA-MA-AA42-01 1 24435005 24435005 C T MYOM3 Missense_Mutation p.R41H 0.33 tolerated(1) benign(0) TCGA-MA-AA42-01 1 24687443 24687443 C T STPG1 Missense_Mutation p.D276N 0.49 tolerated(0.31) possibly_damaging(0.585) TCGA-MA-AA42-01 1 247202761 247202761 G A ZNF670 Missense_Mutation p.L28F 0.08 deleterious(0) probably_damaging(0.996) TCGA-MA-AA42-01 1 247319873 247319873 T - ZNF124 Frame_Shift_Del p.M289Cfs*19 0.15 TCGA-MA-AA42-01 1 248004402 248004402 A G OR11L1 Missense_Mutation p.L266P 0.20 tolerated(0.26) benign(0.051) TCGA-MA-AA42-01 1 248059400 248059400 A G OR2W3 Missense_Mutation p.H171R 0.12 tolerated(0.36) benign(0.004) TCGA-MA-AA42-01 1 2491362 2491362 C T TNFRSF14 Silent p.C135C 0.33 TCGA-MA-AA42-01 1 26612299 26612327 CAACACCGCTCCTACCTGTGTGGAGGGAT AACACCGCTCCTACCTGTGTGGAGGGAATC UBXN11 Splice_Site p.X254_splice 0.16 TCGA-MA-AA42-01 1 27722123 27722123 T C GPR3 3'UTR 0.22 TCGA-MA-AA42-01 1 31405681 31405681 T - PUM1 3'UTR 0.13 TCGA-MA-AA42-01 1 31426576 31426576 T C PUM1 Missense_Mutation p.D859G 0.20 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 1 31532353 31532353 G - PUM1 Frame_Shift_Del p.H21Tfs*2 0.17 TCGA-MA-AA42-01 1 33625416 33625416 C T TRIM62 Missense_Mutation p.E212K 0.12 tolerated(0.05) possibly_damaging(0.453) TCGA-MA-AA42-01 1 35453642 35453642 C T ZMYM6 Missense_Mutation p.R1014H 0.23 tolerated_low_confidence(0.06) probably_damaging(0.935) TCGA-MA-AA42-01 1 35649724 35649724 T C SFPQ 3'UTR 0.17 TCGA-MA-AA42-01 1 36806793 36806793 A - STK40 3'UTR 0.11 TCGA-MA-AA42-01 1 3807432 3807432 C T C1orf174 Missense_Mutation p.E107K 0.35 tolerated(0.68) benign(0.024) TCGA-MA-AA42-01 1 38185704 38185704 G T EPHA10 Silent p.A813A 0.25 TCGA-MA-AA42-01 1 38462885 38462885 G A FHL3 3'UTR 0.33 TCGA-MA-AA42-01 1 39466740 39466740 G A AKIRIN1 Missense_Mutation p.R153Q 0.21 tolerated(0.09) benign(0.081) TCGA-MA-AA42-01 1 44072039 44072039 G A PTPRF Silent p.K1204K 0.30 TCGA-MA-AA42-01 1 51929450 51929450 A G EPS15 Silent p.Y132Y 0.08 TCGA-MA-AA42-01 1 52299744 52299744 G A NRD1 Missense_Mutation p.R339C 0.09 deleterious(0) probably_damaging(0.977) TCGA-MA-AA42-01 1 6162294 6162295 - A CHD5 3'UTR 0.22 TCGA-MA-AA42-01 1 62231967 62231967 C T INADL Missense_Mutation p.S69L 0.12 deleterious(0.02) possibly_damaging(0.603) TCGA-MA-AA42-01 1 65130278 65130278 G A CACHD1 Missense_Mutation p.R680H 0.28 deleterious(0) probably_damaging(0.997) TCGA-MA-AA42-01 1 6694844 6694844 C A DNAJC11 3'UTR 0.25 TCGA-MA-AA42-01 1 76387916 76387916 T - ASB17 Frame_Shift_Del p.N177Tfs*7 0.15 TCGA-MA-AA42-01 1 77620260 77620260 C T PIGK Missense_Mutation p.R287H 0.16 deleterious(0) probably_damaging(0.998) TCGA-MA-AA42-01 1 7792602 7792602 C T CAMTA1 Silent p.S1003S 0.15 TCGA-MA-AA42-01 1 7870607 7870607 G A PER3 Missense_Mutation p.R493H 0.27 tolerated(0.28) benign(0.008) TCGA-MA-AA42-01 1 85499930 85499930 A G MCOLN3 Missense_Mutation p.L134S 0.31 tolerated(0.32) benign(0.004) TCGA-MA-AA42-01 1 87114061 87114061 G A RP4-651E10.4 Intron 0.45 TCGA-MA-AA42-01 1 907709 907709 G A PLEKHN1 Missense_Mutation p.E303K 0.47 deleterious(0.04) possibly_damaging(0.572) TCGA-MA-AA42-01 20 17639725 17639725 C T RRBP1 Intron 0.18 TCGA-MA-AA42-01 20 23501564 23501564 G A RP3-333B15.4 5'Flank 0.34 TCGA-MA-AA42-01 20 308414 308414 G T SOX12 3'UTR 0.25 TCGA-MA-AA42-01 20 3218645 3218645 C T SLC4A11 Silent p.P22P 0.15 TCGA-MA-AA42-01 20 33586216 33586216 C T MYH7B Missense_Mutation p.T1331M 0.09 possibly_damaging(0.763) TCGA-MA-AA42-01 20 34183470 34183470 G A FER1L4 RNA 0.13 TCGA-MA-AA42-01 20 34785926 34785926 C - EPB41L1 Frame_Shift_Del p.S546Pfs*15 0.27 TCGA-MA-AA42-01 20 3571954 3571954 G A ATRN Splice_Site p.X1108_splice 0.06 TCGA-MA-AA42-01 20 37161450 37161450 G A RALGAPB Silent p.E731E 0.16 TCGA-MA-AA42-01 20 39709851 39709851 G A TOP1 Missense_Mutation p.E160K 0.31 tolerated(0.84) benign(0) TCGA-MA-AA42-01 20 40076544 40076544 C T CHD6 Missense_Mutation p.A1251T 0.11 deleterious(0.03) possibly_damaging(0.705) TCGA-MA-AA42-01 20 4158079 4158079 G A SMOX Missense_Mutation p.G97D 0.13 deleterious(0.04) probably_damaging(0.973) TCGA-MA-AA42-01 20 43129936 43129936 C T SERINC3 Missense_Mutation p.R354H 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-MA-AA42-01 20 43567371 43567371 G A PABPC1L Silent p.A611A 0.26 TCGA-MA-AA42-01 20 44539798 44539800 TGT - PLTP In_Frame_Del p.N64del 0.18 TCGA-MA-AA42-01 20 44574946 44574946 C T PCIF1 Silent p.F512F 0.24 TCGA-MA-AA42-01 20 44672303 44672303 C T SLC12A5 Silent p.D446D 0.24 TCGA-MA-AA42-01 20 44879853 44879853 C T CDH22 Silent p.P27P 0.42 TCGA-MA-AA42-01 20 47266692 47266693 - G PREX1 Frame_Shift_Ins p.L957Pfs*50 0.12 TCGA-MA-AA42-01 20 50048782 50048782 C T NFATC2 Silent p.P848P 0.24 TCGA-MA-AA42-01 20 52601929 52601929 G A BCAS1 Missense_Mutation p.S346L 0.31 tolerated(0.19) benign(0.009) TCGA-MA-AA42-01 20 57415653 57415653 C T RP4-806M20.3 5'Flank 0.15 TCGA-MA-AA42-01 20 60705346 60705346 C T LSM14B Nonsense_Mutation p.R223* 0.23 TCGA-MA-AA42-01 20 62198555 62198555 C T HELZ2 Missense_Mutation p.R719H 0.19 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 20 62294194 62294194 C T RTEL1 Missense_Mutation p.R188C 0.15 deleterious(0) probably_damaging(0.994) TCGA-MA-AA42-01 20 9561080 9561080 G A PAK7 Silent p.F234F 0.42 TCGA-MA-AA42-01 21 10951416 10951416 A G TPTE Missense_Mutation p.V99A 0.12 deleterious(0) possibly_damaging(0.634) TCGA-MA-AA42-01 21 15579146 15579146 G A LIPI Silent p.C33C 0.10 TCGA-MA-AA42-01 21 33066532 33066532 G C SCAF4 Missense_Mutation p.S436C 0.10 possibly_damaging(0.7) TCGA-MA-AA42-01 21 34660503 34660503 C T IL10RB Silent p.C247C 0.06 TCGA-MA-AA42-01 21 40887111 40887111 G T SH3BGR 3'UTR 0.21 TCGA-MA-AA42-01 21 41648070 41648070 G C DSCAM Missense_Mutation p.N770K 0.38 deleterious(0) probably_damaging(0.994) TCGA-MA-AA42-01 21 43802285 43802285 G A TMPRSS3 Missense_Mutation p.P281S 0.27 tolerated(0.54) benign(0.034) TCGA-MA-AA42-01 21 47532101 47532101 C T COL6A2 Silent p.F108F 0.26 TCGA-MA-AA42-01 21 47986589 47986589 G A DIP2A Missense_Mutation p.A1486T 0.33 tolerated(0.31) possibly_damaging(0.654) TCGA-MA-AA42-01 22 17619184 17619184 C T CECR5 Silent p.T333T 0.12 TCGA-MA-AA42-01 22 21805372 21805372 G - HIC2 3'UTR 0.23 TCGA-MA-AA42-01 22 22707636 22707636 C G IGLV5-48 Nonsense_Mutation p.S75* 0.40 TCGA-MA-AA42-01 22 23659032 23659032 G C BCR 3'UTR 0.16 TCGA-MA-AA42-01 22 32017843 32017843 C T PISD Missense_Mutation p.R83H 0.36 deleterious(0) probably_damaging(0.997) TCGA-MA-AA42-01 22 36013308 36013308 G A MB 5'UTR 0.11 TCGA-MA-AA42-01 22 38539283 38539283 G A PLA2G6 Silent p.C146C 0.38 TCGA-MA-AA42-01 22 39477173 39477173 G A APOBEC3G Missense_Mutation p.R136H 0.25 tolerated(0.14) benign(0.079) TCGA-MA-AA42-01 22 45826844 45826844 G A RIBC2 Missense_Mutation p.R318H 0.15 tolerated(0.08) benign(0.427) TCGA-MA-AA42-01 22 46501506 46501506 A T FLJ27365 Intron 0.37 TCGA-MA-AA42-01 22 47070558 47070558 C T GRAMD4 Silent p.C463C 0.25 TCGA-MA-AA42-01 22 50658830 50658830 G A TUBGCP6 Missense_Mutation p.R1320W 0.16 tolerated(0.07) possibly_damaging(0.862) TCGA-MA-AA42-01 2 102314520 102314520 T - MAP4K4 5'Flank 0.15 TCGA-MA-AA42-01 2 103274181 103274181 G A SLC9A2 Missense_Mutation p.V150M 0.17 deleterious(0) probably_damaging(0.995) TCGA-MA-AA42-01 2 109398680 109398680 C T RANBP2 Missense_Mutation p.R2953C 0.23 deleterious(0.01) probably_damaging(1) TCGA-MA-AA42-01 2 11053466 11053466 G A KCNF1 Missense_Mutation p.R305H 0.24 deleterious(0) probably_damaging(0.976) TCGA-MA-AA42-01 2 112874269 112874269 C - TMEM87B 3'UTR 0.43 TCGA-MA-AA42-01 2 11426744 11426745 - T ROCK2 Frame_Shift_Ins p.I82Nfs*12 0.12 TCGA-MA-AA42-01 2 122098399 122098399 G A CLASP1 3'UTR 0.30 TCGA-MA-AA42-01 2 131976476 131976476 C A POTEE Missense_Mutation p.N167K 0.12 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-MA-AA42-01 2 138420991 138420991 A G THSD7B Missense_Mutation p.I1502M 0.06 deleterious(0) unknown(0) TCGA-MA-AA42-01 2 141253270 141253270 A G LRP1B Silent p.C2966C 0.07 TCGA-MA-AA42-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.08 TCGA-MA-AA42-01 2 151326280 151326280 C G RND3 3'UTR 0.32 TCGA-MA-AA42-01 2 152484073 152484073 G A NEB Silent p.V3369V 0.34 TCGA-MA-AA42-01 2 157406260 157406260 G A GPD2 Missense_Mutation p.A268T 0.06 deleterious(0.01) probably_damaging(0.975) TCGA-MA-AA42-01 2 161223756 161223756 G A RBMS1 Silent p.T74T 0.25 TCGA-MA-AA42-01 2 166771886 166771886 G A TTC21B Missense_Mutation p.R655W 0.07 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 2 178084825 178084825 G C HNRNPA3 3'Flank 0.44 TCGA-MA-AA42-01 2 178402942 178402942 A - AGPS 3'UTR 0.23 TCGA-MA-AA42-01 2 179456054 179456054 G A TTN Missense_Mutation p.S20133L 0.35 TCGA-MA-AA42-01 2 1795382 1795382 A G MYT1L 3'UTR 0.13 TCGA-MA-AA42-01 2 179613093 179613093 G A TTN Intron 0.35 TCGA-MA-AA42-01 2 182322297 182322297 G A ITGA4 5'UTR 0.10 TCGA-MA-AA42-01 2 187605073 187605073 C A FAM171B Missense_Mutation p.S119R 0.18 tolerated(0.52) benign(0.01) TCGA-MA-AA42-01 2 190531747 190531747 C T ASNSD1 Missense_Mutation p.R297C 0.10 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 2 20482809 20482809 G T PUM2 Missense_Mutation p.S540Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 2 20512034 20512034 G A PUM2 Missense_Mutation p.A104V 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.581) TCGA-MA-AA42-01 2 208994350 208994350 A G CRYGC Missense_Mutation p.C23R 0.18 deleterious(0.03) benign(0.073) TCGA-MA-AA42-01 2 209212749 209212749 T C PIKFYVE Splice_Site p.X1792_splice 0.09 TCGA-MA-AA42-01 2 212251677 212251677 A G ERBB4 Missense_Mutation p.Y1128H 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-MA-AA42-01 2 215279114 215279114 G A VWC2L Missense_Mutation p.R66Q 0.16 tolerated(0.35) probably_damaging(0.947) TCGA-MA-AA42-01 2 219082268 219082268 G C ARPC2 Splice_Site p.X25_splice 0.23 TCGA-MA-AA42-01 2 219135194 219135194 G A PNKD 5'Flank 0.30 TCGA-MA-AA42-01 2 219895497 219895497 C T CCDC108 Missense_Mutation p.E359K 0.25 tolerated(0.63) benign(0.091) TCGA-MA-AA42-01 2 220326765 220326765 C - SPEG Frame_Shift_Del p.T870Pfs*11 0.17 TCGA-MA-AA42-01 2 225717794 225717794 A G DOCK10 Missense_Mutation p.M645T 0.10 tolerated(0.58) benign(0) TCGA-MA-AA42-01 2 230723678 230723678 C T TRIP12 Silent p.A237A 0.19 TCGA-MA-AA42-01 2 233274436 233274436 G A ALPPL2 Missense_Mutation p.A485T 0.22 deleterious(0.03) possibly_damaging(0.718) TCGA-MA-AA42-01 2 234197558 234197558 C T ATG16L1 Intron 0.27 TCGA-MA-AA42-01 2 23919321 23919321 C T KLHL29 Silent p.Y681Y 0.30 TCGA-MA-AA42-01 2 241401819 241401819 C - GPC1 Frame_Shift_Del p.Q181Sfs*71 0.19 TCGA-MA-AA42-01 2 241816984 241816984 G A AGXT Missense_Mutation p.E293K 0.36 tolerated(0.33) benign(0.025) TCGA-MA-AA42-01 2 242167206 242167206 C T HDLBP 3'UTR 0.33 TCGA-MA-AA42-01 2 24533183 24533183 G A ITSN2 Missense_Mutation p.A208V 0.31 tolerated(0.05) benign(0.255) TCGA-MA-AA42-01 2 25377237 25377237 G A EFR3B 3'UTR 0.27 TCGA-MA-AA42-01 2 27805386 27805386 A G C2orf16 Missense_Mutation p.T1983A 0.19 tolerated_low_confidence(0.18) unknown(0) TCGA-MA-AA42-01 2 27839127 27839128 - G ZNF512 Splice_Site p.X412_splice 0.12 TCGA-MA-AA42-01 2 31604585 31604585 C G XDH Missense_Mutation p.G349A 0.19 deleterious(0.05) possibly_damaging(0.449) TCGA-MA-AA42-01 2 37478339 37478339 A - PRKD3 3'UTR 0.39 TCGA-MA-AA42-01 2 47288012 47288012 C T TTC7A Missense_Mutation p.R753W 0.14 deleterious(0.03) benign(0.052) TCGA-MA-AA42-01 2 64322116 64322116 C T PELI1 Missense_Mutation p.R326H 0.14 deleterious(0.04) possibly_damaging(0.575) TCGA-MA-AA42-01 2 7181538 7181538 C T RNF144A 3'UTR 0.27 TCGA-MA-AA42-01 2 71838613 71838613 C T DYSF Missense_Mutation p.R1360W 0.16 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 2 72692069 72692069 A G EXOC6B Intron 0.33 TCGA-MA-AA42-01 2 84756057 84756057 T C DNAH6 Silent p.S143S 0.12 TCGA-MA-AA42-01 2 85536309 85536309 G A TCF7L1 Silent p.S497S 0.15 TCGA-MA-AA42-01 2 86443997 86443997 A - REEP1 3'UTR 0.14 TCGA-MA-AA42-01 2 98317638 98317638 C T LINC01125 RNA 0.19 TCGA-MA-AA42-01 3 113442820 113442820 T C NAA50 Missense_Mutation p.E44G 0.20 deleterious(0) possibly_damaging(0.765) TCGA-MA-AA42-01 3 11350536 11350536 G A ATG7 Splice_Site p.X137_splice 0.47 TCGA-MA-AA42-01 3 119084171 119084171 G A ARHGAP31 Missense_Mutation p.V37I 0.08 deleterious(0) probably_damaging(0.998) TCGA-MA-AA42-01 3 122449489 122449489 G C PARP14 3'UTR 0.08 TCGA-MA-AA42-01 3 122449588 122449588 G A PARP14 3'UTR 0.13 TCGA-MA-AA42-01 3 122631758 122631758 C T SEMA5B Missense_Mutation p.R940H 0.18 deleterious(0.03) probably_damaging(0.961) TCGA-MA-AA42-01 3 124114158 124114158 G A KALRN Silent p.A711A 0.24 TCGA-MA-AA42-01 3 125828793 125828793 G A ALDH1L1 Missense_Mutation p.R791W 0.23 deleterious(0) probably_damaging(0.928) TCGA-MA-AA42-01 3 126707776 126707776 G A PLXNA1 Missense_Mutation p.V114I 0.26 tolerated(0.12) possibly_damaging(0.829) TCGA-MA-AA42-01 3 134322972 134322972 G A KY Missense_Mutation p.R479C 0.26 tolerated(0.14) benign(0.214) TCGA-MA-AA42-01 3 13860282 13860282 T - WNT7A 3'UTR 0.34 TCGA-MA-AA42-01 3 138763558 138763558 G A PRR23C 5'UTR 0.23 TCGA-MA-AA42-01 3 139092247 139092247 C T COPB2 Missense_Mutation p.R301Q 0.10 deleterious(0.02) probably_damaging(0.954) TCGA-MA-AA42-01 3 140866835 140866835 C - SPSB4 3'UTR 0.11 TCGA-MA-AA42-01 3 148904493 148904493 G C CP Missense_Mutation p.Q631E 0.18 deleterious(0) possibly_damaging(0.571) TCGA-MA-AA42-01 3 151150682 151150682 T - MED12L 3'UTR 0.21 TCGA-MA-AA42-01 3 152183219 152183219 G A MBNL1 3'UTR 0.18 TCGA-MA-AA42-01 3 154021121 154021122 - T DHX36 Frame_Shift_Ins p.I405Nfs*15 0.10 TCGA-MA-AA42-01 3 156422724 156422724 C T TIPARP Missense_Mutation p.T593M 0.14 tolerated(0.06) probably_damaging(0.98) TCGA-MA-AA42-01 3 176769487 176769487 T C TBL1XR1 Missense_Mutation p.I78V 0.18 tolerated(0.51) benign(0.005) TCGA-MA-AA42-01 3 180320085 180320085 C T TTC14 Silent p.C12C 0.09 TCGA-MA-AA42-01 3 182661936 182661936 A - DCUN1D1 3'UTR 0.22 TCGA-MA-AA42-01 3 184100148 184100148 C T CHRD Intron 0.32 TCGA-MA-AA42-01 3 184798136 184798136 G A C3orf70 3'UTR 0.14 TCGA-MA-AA42-01 3 186944285 186944285 C T MASP1 Missense_Mutation p.A489T 0.24 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 3 187439543 187439543 A G BCL6 3'UTR 0.20 TCGA-MA-AA42-01 3 190373990 190373990 C T IL1RAP Missense_Mutation p.S553F 0.29 deleterious(0.03) possibly_damaging(0.689) TCGA-MA-AA42-01 3 195509946 195509946 G C MUC4 Silent p.V2835V 0.14 TCGA-MA-AA42-01 3 195512783 195512783 G C MUC4 Missense_Mutation p.P1890A 0.07 unknown(0) TCGA-MA-AA42-01 3 195711081 195711081 C T SDHAP1 RNA 0.06 TCGA-MA-AA42-01 3 24160563 24160563 G A THRB 3'UTR 0.25 TCGA-MA-AA42-01 3 37089172 37089172 G T MLH1 Nonsense_Mutation p.E632* 0.53 TCGA-MA-AA42-01 3 37536042 37536042 G A ITGA9 Missense_Mutation p.A199T 0.22 deleterious(0) possibly_damaging(0.682) TCGA-MA-AA42-01 3 39425183 39425183 C A SLC25A38 5'UTR 0.14 TCGA-MA-AA42-01 3 42956697 42956697 C T ZNF662 Missense_Mutation p.H404Y 0.46 deleterious(0.03) benign(0.059) TCGA-MA-AA42-01 3 48626311 48626311 C T COL7A1 Missense_Mutation p.R811Q 0.47 unknown(0) TCGA-MA-AA42-01 3 48679369 48679369 G A CELSR3 Silent p.S2913S 0.24 TCGA-MA-AA42-01 3 52242174 52242174 A T ALAS1 Missense_Mutation p.H414L 0.52 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 3 62153788 62153788 C T PTPRG Silent p.H328H 0.24 TCGA-MA-AA42-01 3 97662033 97662033 G A MINA 3'UTR 0.61 TCGA-MA-AA42-01 4 100540148 100540148 T C MTTP Silent p.S745S 0.08 TCGA-MA-AA42-01 4 106156339 106156339 C T TET2 Nonsense_Mutation p.Q414* 0.28 TCGA-MA-AA42-01 4 106320197 106320198 - T PPA2 Frame_Shift_Ins p.N260Kfs*7 0.17 TCGA-MA-AA42-01 4 122681264 122681264 G A TMEM155 3'UTR 0.25 TCGA-MA-AA42-01 4 129120736 129120736 C T LARP1B Missense_Mutation p.R716C 0.26 deleterious(0) possibly_damaging(0.893) TCGA-MA-AA42-01 4 134072358 134072358 G A PCDH10 Missense_Mutation p.A355T 0.11 tolerated(0.21) benign(0.003) TCGA-MA-AA42-01 4 1346949 1346949 C T UVSSA Missense_Mutation p.R228C 0.12 tolerated(0.19) benign(0) TCGA-MA-AA42-01 4 1347135 1347135 G A UVSSA Missense_Mutation p.E290K 0.47 deleterious(0.03) possibly_damaging(0.627) TCGA-MA-AA42-01 4 146823341 146823341 C T ZNF827 Missense_Mutation p.R357K 0.40 tolerated(0.18) probably_damaging(0.986) TCGA-MA-AA42-01 4 151186709 151186709 C A LRBA 3'UTR 0.09 TCGA-MA-AA42-01 4 152583760 152583760 C - FAM160A1 Frame_Shift_Del p.N995Tfs*6 0.23 TCGA-MA-AA42-01 4 153332919 153332919 G A FBXW7 Nonsense_Mutation p.R13* 0.23 TCGA-MA-AA42-01 4 156135533 156135533 C T NPY2R Missense_Mutation p.R148W 0.50 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 4 16162492 16162492 A G TAPT1 3'UTR 0.30 TCGA-MA-AA42-01 4 164247270 164247270 C T NPY1R Missense_Mutation p.R146Q 0.23 tolerated(0.1) benign(0.232) TCGA-MA-AA42-01 4 170017732 170017732 C A SH3RF1 Missense_Mutation p.G869C 0.11 deleterious(0) probably_damaging(0.995) TCGA-MA-AA42-01 4 1746815 1746816 - T TACC3 3'UTR 0.16 TCGA-MA-AA42-01 4 185310069 185310069 G A IRF2 Missense_Mutation p.P298L 0.32 tolerated(0.05) benign(0.26) TCGA-MA-AA42-01 4 22425825 22425825 C T GPR125 Missense_Mutation p.V532I 0.11 tolerated(0.12) possibly_damaging(0.552) TCGA-MA-AA42-01 4 25416102 25416102 G A ANAPC4 Missense_Mutation p.R567H 0.07 tolerated(0.17) possibly_damaging(0.563) TCGA-MA-AA42-01 4 36230657 36230657 C T ARAP2 Missense_Mutation p.R151H 0.21 tolerated_low_confidence(1) benign(0) TCGA-MA-AA42-01 4 48343910 48343910 G A SLAIN2 Missense_Mutation p.A52T 0.19 tolerated(0.14) benign(0) TCGA-MA-AA42-01 4 48533284 48533284 C A FRYL Missense_Mutation p.K2264N 0.19 tolerated(0.37) benign(0.418) TCGA-MA-AA42-01 4 53492183 53492184 AC - USP46 Splice_Site p.X187_splice 0.20 TCGA-MA-AA42-01 4 57182745 57182745 G A KIAA1211 Missense_Mutation p.G1026E 0.25 tolerated(0.17) probably_damaging(0.969) TCGA-MA-AA42-01 4 62383147 62383147 G A LPHN3 Intron 0.11 TCGA-MA-AA42-01 4 658000 658000 G A PDE6B Missense_Mutation p.E707K 0.32 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 4 68928901 68928901 A - TMPRSS11F Intron 0.11 TCGA-MA-AA42-01 4 71588470 71588470 T C RUFY3 Splice_Site p.X60_splice 0.14 TCGA-MA-AA42-01 4 75167509 75167509 A - MTHFD2L Frame_Shift_Del p.I345Sfs*48 0.17 TCGA-MA-AA42-01 4 77184963 77184964 - A FAM47E Frame_Shift_Ins p.H179Tfs*24 0.10 TCGA-MA-AA42-01 4 7780496 7780496 C T AFAP1 Silent p.T630T 0.15 TCGA-MA-AA42-01 4 78640235 78640235 A G CNOT6L 3'UTR 0.24 TCGA-MA-AA42-01 4 83785602 83785602 C T SEC31A Silent p.V449V 0.15 TCGA-MA-AA42-01 4 85569961 85569961 T C CDS1 3'UTR 0.09 TCGA-MA-AA42-01 4 87683960 87683960 G C PTPN13 Missense_Mutation p.D1212H 0.33 tolerated(0.07) possibly_damaging(0.824) TCGA-MA-AA42-01 4 90035974 90035974 G C TIGD2 3'UTR 0.28 TCGA-MA-AA42-01 5 100146435 100146435 T - ST8SIA4 3'UTR 0.19 TCGA-MA-AA42-01 5 115298352 115298352 G A AQPEP Missense_Mutation p.R13H 0.22 deleterious(0) probably_damaging(0.941) TCGA-MA-AA42-01 5 127648338 127648338 G A FBN2 Missense_Mutation p.P1623S 0.16 tolerated(0.53) benign(0.038) TCGA-MA-AA42-01 5 131825147 131825147 C A IRF1 Missense_Mutation p.M8I 0.39 deleterious(0) probably_damaging(0.974) TCGA-MA-AA42-01 5 131825151 131825151 C T IRF1 Missense_Mutation p.R7H 0.38 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 5 134223448 134223448 C T TXNDC15 Missense_Mutation p.A56V 0.20 tolerated(0.1) benign(0.01) TCGA-MA-AA42-01 5 138209669 138209669 C T LRRTM2 Missense_Mutation p.R194Q 0.19 tolerated(0.12) benign(0.252) TCGA-MA-AA42-01 5 139060546 139060546 C T CXXC5 Silent p.S146S 0.28 TCGA-MA-AA42-01 5 140041789 140041789 A G IK Missense_Mutation p.E546G 0.20 tolerated(0.23) probably_damaging(0.996) TCGA-MA-AA42-01 5 140242525 140242525 G C AC005609.1 Missense_Mutation p.H151D 0.19 deleterious_low_confidence(0) benign(0.402) TCGA-MA-AA42-01 5 140625378 140625378 G C PCDHB15 Missense_Mutation p.D78H 0.30 tolerated_low_confidence(0.06) benign(0.344) TCGA-MA-AA42-01 5 140725205 140725205 C T PCDHGA3 Silent p.S535S 0.27 TCGA-MA-AA42-01 5 140799720 140799720 T C PCDHGB7 Missense_Mutation p.F765S 0.13 tolerated(0.06) benign(0.347) TCGA-MA-AA42-01 5 140810539 140810539 G A PCDHGA12 Silent p.R71R 0.15 TCGA-MA-AA42-01 5 140857475 140857475 G A PCDHGC3 Missense_Mutation p.A598T 0.33 deleterious(0.02) possibly_damaging(0.529) TCGA-MA-AA42-01 5 1443244 1443244 G A SLC6A3 Silent p.A23A 0.15 TCGA-MA-AA42-01 5 14441349 14441349 C A TRIO Intron 0.26 TCGA-MA-AA42-01 5 156946851 156946851 C T ADAM19 Missense_Mutation p.R199H 0.20 tolerated(0.79) benign(0.001) TCGA-MA-AA42-01 5 158747355 158747355 T C IL12B Missense_Mutation p.K219R 0.10 tolerated(0.12) benign(0.193) TCGA-MA-AA42-01 5 162945691 162945691 C T MAT2B 3'UTR 0.15 TCGA-MA-AA42-01 5 167674240 167674240 G A TENM2 Missense_Mutation p.R2099H 0.27 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 5 169116273 169116273 G A DOCK2 Missense_Mutation p.R260Q 0.16 tolerated(0.06) benign(0.327) TCGA-MA-AA42-01 5 169724657 169724657 G A LCP2 5'UTR 0.21 TCGA-MA-AA42-01 5 169805659 169805659 C T KCNMB1 3'UTR 0.25 TCGA-MA-AA42-01 5 176008486 176008487 - C CDHR2 Frame_Shift_Ins p.A656Rfs*14 0.15 TCGA-MA-AA42-01 5 178608128 178608128 A G ADAMTS2 Missense_Mutation p.L307S 0.18 deleterious(0) probably_damaging(0.996) TCGA-MA-AA42-01 5 180651735 180651738 TGTG - TRIM41 Frame_Shift_Del p.C246Wfs*35 0.29 TCGA-MA-AA42-01 5 180669193 180669193 G A GNB2L1 Missense_Mutation p.R88C 0.13 deleterious(0.02) benign(0.406) TCGA-MA-AA42-01 5 24537606 24537606 G C CDH10 Missense_Mutation p.L137V 0.09 tolerated(0.09) benign(0.29) TCGA-MA-AA42-01 5 33527430 33527430 G C ADAMTS12 Missense_Mutation p.Q1550E 0.17 tolerated(0.65) benign(0.015) TCGA-MA-AA42-01 5 33944783 33944783 A G SLC45A2 Silent p.F521F 0.17 TCGA-MA-AA42-01 5 35795856 35795856 C T SPEF2 Missense_Mutation p.L1597F 0.14 tolerated(0.06) possibly_damaging(0.889) TCGA-MA-AA42-01 5 38949999 38949999 A G RICTOR Silent p.C1317C 0.11 TCGA-MA-AA42-01 5 39270710 39270710 G A FYB 5'UTR 0.42 TCGA-MA-AA42-01 5 43454068 43454068 C T C5orf28 Missense_Mutation p.A2T 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.705) TCGA-MA-AA42-01 5 45695886 45695886 G A HCN1 Missense_Mutation p.P104S 0.11 deleterious(0) probably_damaging(0.992) TCGA-MA-AA42-01 5 65004334 65004334 C T SGTB Missense_Mutation p.D86N 0.24 tolerated(0.09) benign(0.017) TCGA-MA-AA42-01 5 65466589 65466589 G C SREK1 Missense_Mutation p.R433T 0.12 tolerated(0.16) unknown(0) TCGA-MA-AA42-01 5 76640747 76640747 C T PDE8B Silent p.H289H 0.27 TCGA-MA-AA42-01 5 81474388 81474388 G A ATG10 Nonsense_Mutation p.W145* 0.15 TCGA-MA-AA42-01 5 94206641 94206641 T - MCTP1 Frame_Shift_Del p.N726Tfs*4 0.19 TCGA-MA-AA42-01 6 105232863 105232863 G T HACE1 Missense_Mutation p.P469Q 0.14 tolerated(0.98) benign(0) TCGA-MA-AA42-01 6 119515053 119515053 A G MAN1A1 Silent p.H405H 0.39 TCGA-MA-AA42-01 6 129621918 129621918 A G LAMA2 Silent p.P1025P 0.35 TCGA-MA-AA42-01 6 13305310 13305310 C T TBC1D7 3'UTR 0.29 TCGA-MA-AA42-01 6 144509007 144509007 G A STX11 3'UTR 0.34 TCGA-MA-AA42-01 6 157528701 157528701 C T ARID1B Silent p.D2142D 0.33 TCGA-MA-AA42-01 6 168363158 168363158 C T MLLT4 Missense_Mutation p.R1618C 0.16 deleterious_low_confidence(0) unknown(0) TCGA-MA-AA42-01 6 26200015 26200015 G C HIST1H2BF Missense_Mutation p.E77Q 0.35 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-MA-AA42-01 6 29394687 29394687 G A OR11A1 Silent p.S244S 0.23 TCGA-MA-AA42-01 6 29693310 29693310 G A HLA-F Missense_Mutation p.A325T 0.28 tolerated_low_confidence(0.3) benign(0) TCGA-MA-AA42-01 6 31238934 31238934 G A HLA-C Nonsense_Mutation p.Q179* 0.14 TCGA-MA-AA42-01 6 31741200 31741200 C T VWA7 Missense_Mutation p.G246R 0.45 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 6 32011597 32011597 C T TNXB Missense_Mutation p.R249H 0.25 tolerated(0.15) benign(0.021) TCGA-MA-AA42-01 6 34029784 34029784 G A GRM4 Missense_Mutation p.S253L 0.39 deleterious(0) benign(0.352) TCGA-MA-AA42-01 6 35443241 35443241 C T TEAD3 Missense_Mutation p.G356R 0.59 deleterious(0) possibly_damaging(0.885) TCGA-MA-AA42-01 6 393344 393344 C T IRF4 Silent p.R64R 0.19 TCGA-MA-AA42-01 6 43013046 43013046 C T CUL7 Missense_Mutation p.R1070H 0.46 tolerated(0.53) benign(0.15) TCGA-MA-AA42-01 6 43473187 43473187 C A TJAP1 Missense_Mutation p.P423Q 0.29 deleterious(0.03) probably_damaging(0.984) TCGA-MA-AA42-01 6 44390511 44390511 G A CDC5L Missense_Mutation p.A457T 0.33 tolerated(0.61) benign(0.001) TCGA-MA-AA42-01 6 51609235 51609235 A G PKHD1 Silent p.V3368V 0.25 TCGA-MA-AA42-01 6 72596670 72596670 G A RIMS1 5'Flank 0.31 TCGA-MA-AA42-01 7 100253458 100253458 G A ACTL6B Missense_Mutation p.R24C 0.16 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 7 102113378 102113378 G T LRWD1 Missense_Mutation p.W609L 0.18 tolerated(0.65) benign(0) TCGA-MA-AA42-01 7 107341590 107341590 G A SLC26A4 Silent p.A584A 0.16 TCGA-MA-AA42-01 7 107591728 107591728 G A LAMB1 Missense_Mutation p.R1112C 0.22 deleterious(0) probably_damaging(0.993) TCGA-MA-AA42-01 7 111535703 111535703 G C DOCK4 Missense_Mutation p.L518V 0.07 deleterious(0.02) possibly_damaging(0.73) TCGA-MA-AA42-01 7 112424238 112424238 A - TMEM168 Frame_Shift_Del p.S215Pfs*19 0.11 TCGA-MA-AA42-01 7 117864828 117864828 C T ANKRD7 5'UTR 0.33 TCGA-MA-AA42-01 7 131912321 131912321 C T PLXNA4 Missense_Mutation p.V591I 0.33 tolerated(0.36) benign(0.041) TCGA-MA-AA42-01 7 136555821 136555821 G A CHRM2 Intron 0.40 TCGA-MA-AA42-01 7 138764980 138764982 GAA - ZC3HAV1 In_Frame_Del p.S236del 0.19 TCGA-MA-AA42-01 7 13935562 13935562 C T ETV1 Missense_Mutation p.E455K 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-MA-AA42-01 7 140395593 140395593 G A ADCK2 3'Flank 0.12 TCGA-MA-AA42-01 7 150711131 150711131 C T NOS3 Silent p.L1162L 0.29 TCGA-MA-AA42-01 7 154684662 154684662 C T DPP6 3'UTR 0.27 TCGA-MA-AA42-01 7 154755443 154755443 T C PAXIP1 Missense_Mutation p.T643A 0.13 tolerated(0.16) unknown(0) TCGA-MA-AA42-01 7 156801723 156801723 A G MNX1 Intron 0.08 TCGA-MA-AA42-01 7 157177561 157177561 G A DNAJB6 Missense_Mutation p.G160E 0.11 tolerated(0.05) probably_damaging(0.931) TCGA-MA-AA42-01 7 1580734 1580734 C T MAFK 3'UTR 0.29 TCGA-MA-AA42-01 7 1580895 1580895 G A MAFK 3'UTR 0.19 TCGA-MA-AA42-01 7 21677275 21677275 C T DNAH11 Missense_Mutation p.T1596M 0.08 probably_damaging(0.928) TCGA-MA-AA42-01 7 27238931 27238931 G A HOXA13 Missense_Mutation p.P256S 0.12 tolerated(0.06) benign(0.288) TCGA-MA-AA42-01 7 27570865 27570865 G A HIBADH Silent p.G266G 0.10 TCGA-MA-AA42-01 7 30931703 30931703 C T FAM188B 3'UTR 0.33 TCGA-MA-AA42-01 7 48075843 48075843 G A C7orf57 5'UTR 0.26 TCGA-MA-AA42-01 7 50531075 50531075 T - DDC Frame_Shift_Del p.I433Sfs*98 0.21 TCGA-MA-AA42-01 7 50560644 50560644 A G DDC Intron 0.09 TCGA-MA-AA42-01 7 5413780 5413780 G A TNRC18 Silent p.I1045I 0.17 TCGA-MA-AA42-01 7 5632970 5632970 C T FSCN1 Missense_Mutation p.H135Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-MA-AA42-01 7 5925720 5925720 A G OCM Silent p.%3D 0.23 TCGA-MA-AA42-01 7 6203920 6203921 - T CYTH3 3'UTR 0.24 TCGA-MA-AA42-01 7 72413213 72413213 C A POM121 Missense_Mutation p.T629N 0.23 tolerated(0.11) possibly_damaging(0.613) TCGA-MA-AA42-01 7 83587810 83587810 A - SEMA3A 3'UTR 0.25 TCGA-MA-AA42-01 7 872186 872186 T C SUN1 Missense_Mutation p.Y9H 0.06 tolerated(0.05) probably_damaging(0.991) TCGA-MA-AA42-01 7 91852193 91852193 G A KRIT1 Missense_Mutation p.R452C 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-MA-AA42-01 7 94298268 94298269 - A PEG10 3'UTR 0.18 TCGA-MA-AA42-01 7 95125367 95125367 G A ASB4 Missense_Mutation p.R162K 0.09 tolerated(0.75) benign(0.002) TCGA-MA-AA42-01 7 95165785 95165785 G A ASB4 Missense_Mutation p.E339K 0.19 deleterious(0) probably_damaging(0.937) TCGA-MA-AA42-01 7 98258809 98258809 G C NPTX2 3'UTR 0.40 TCGA-MA-AA42-01 7 99047949 99047949 A C CPSF4 Missense_Mutation p.K120Q 0.20 deleterious(0.01) possibly_damaging(0.715) TCGA-MA-AA42-01 7 99800142 99800142 T C STAG3 Missense_Mutation p.F877L 0.18 deleterious(0) possibly_damaging(0.721) TCGA-MA-AA42-01 8 101237446 101237446 G A SPAG1 Silent p.E578E 0.21 TCGA-MA-AA42-01 8 113236906 113236906 G A CSMD3 3'UTR 0.42 TCGA-MA-AA42-01 8 113516067 113516067 G A CSMD3 Missense_Mutation p.R1679W 0.16 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 8 116423933 116423933 C T TRPS1 3'UTR 0.35 TCGA-MA-AA42-01 8 116426159 116426160 - T TRPS1 3'UTR 0.14 TCGA-MA-AA42-01 8 118819555 118819555 C T EXT1 Missense_Mutation p.R595H 0.06 tolerated(0.13) probably_damaging(0.975) TCGA-MA-AA42-01 8 124054400 124054400 C A DERL1 5'UTR 0.17 TCGA-MA-AA42-01 8 126062854 126062854 G A KIAA0196 Silent p.R717R 0.18 TCGA-MA-AA42-01 8 144801569 144801569 G - MAPK15 Frame_Shift_Del p.R215Dfs*15 0.13 TCGA-MA-AA42-01 8 144808489 144808489 T C FAM83H Missense_Mutation p.S1048G 0.22 deleterious(0) probably_damaging(0.993) TCGA-MA-AA42-01 8 145060242 145060242 G A PARP10 Silent p.L54L 0.16 TCGA-MA-AA42-01 8 145619158 145619158 C - CPSF1 Frame_Shift_Del p.A1319Pfs*42 0.16 TCGA-MA-AA42-01 8 145727253 145727253 C T PPP1R16A Silent p.P518P 0.33 TCGA-MA-AA42-01 8 38003573 38003573 G A STAR Silent p.S186S 0.32 TCGA-MA-AA42-01 8 43054590 43054590 C T HGSNAT Nonsense_Mutation p.Q596* 0.20 TCGA-MA-AA42-01 8 4851859 4851859 G A CSMD1 Missense_Mutation p.A27V 0.15 benign(0.001) TCGA-MA-AA42-01 8 52287278 52287278 G C PXDNL Missense_Mutation p.P1191A 0.08 deleterious(0.01) probably_damaging(0.973) TCGA-MA-AA42-01 8 55541179 55541179 A - RP1 Frame_Shift_Del p.K1581Nfs*7 0.15 TCGA-MA-AA42-01 8 56879390 56879390 G A LYN Missense_Mutation p.V303M 0.10 deleterious(0) possibly_damaging(0.8) TCGA-MA-AA42-01 8 6420340 6420340 C A ANGPT2 Missense_Mutation p.G39V 0.11 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 8 72969199 72969199 C T TRPA1 Missense_Mutation p.V383I 0.17 tolerated(0.42) benign(0.02) TCGA-MA-AA42-01 8 75148989 75148989 G T JPH1 3'UTR 0.15 TCGA-MA-AA42-01 8 77754993 77754993 C T ZFHX4 Missense_Mutation p.S1166F 0.27 benign(0.227) TCGA-MA-AA42-01 8 77776931 77776931 T - ZFHX4 3'UTR 0.12 TCGA-MA-AA42-01 8 80831146 80831146 T A MRPS28 3'UTR 0.12 TCGA-MA-AA42-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.24 TCGA-MA-AA42-01 9 101014191 101014191 C T TBC1D2 Silent p.A129A 0.14 TCGA-MA-AA42-01 9 102626389 102626389 G - NR4A3 3'UTR 0.16 TCGA-MA-AA42-01 9 104162237 104162237 G C ZNF189 Missense_Mutation p.Q35H 0.29 deleterious(0) benign(0.091) TCGA-MA-AA42-01 9 111778013 111778014 - C TMEM245 3'UTR 0.12 TCGA-MA-AA42-01 9 117110052 117110052 C T AKNA Missense_Mutation p.R1117H 0.24 deleterious(0.01) probably_damaging(0.912) TCGA-MA-AA42-01 9 124103467 124103467 G A STOM 3'UTR 0.18 TCGA-MA-AA42-01 9 124971984 124971984 C T LHX6 Missense_Mutation p.C356Y 0.25 deleterious_low_confidence(0) benign(0.126) TCGA-MA-AA42-01 9 125437525 125437525 G C OR1L3 Missense_Mutation p.L39F 0.07 deleterious(0.03) possibly_damaging(0.646) TCGA-MA-AA42-01 9 125865604 125865604 G C RABGAP1 3'UTR 0.35 TCGA-MA-AA42-01 9 128126110 128126110 A - GAPVD1 3'Flank 0.16 TCGA-MA-AA42-01 9 130569508 130569509 - C FPGS Frame_Shift_Ins p.Y177Lfs*32 0.26 TCGA-MA-AA42-01 9 135962403 135962403 C - CELP RNA 0.14 TCGA-MA-AA42-01 9 139360547 139360547 G A SEC16A Silent p.Y1390Y 0.31 TCGA-MA-AA42-01 9 139794123 139794123 C T TRAF2 Missense_Mutation p.S89L 0.23 deleterious(0.04) benign(0.27) TCGA-MA-AA42-01 9 139888334 139888334 C - C9orf142 3'UTR 0.29 TCGA-MA-AA42-01 9 140343510 140343510 C T NSMF 3'UTR 0.20 TCGA-MA-AA42-01 9 32526102 32526102 G C DDX58 Missense_Mutation p.D21E 0.17 tolerated(0.14) benign(0.23) TCGA-MA-AA42-01 9 34835388 34835388 T C FAM205B RNA 0.30 TCGA-MA-AA42-01 9 36630344 36630346 CTT - MELK In_Frame_Del p.L240del 0.36 TCGA-MA-AA42-01 9 43818134 43818134 G A CNTNAP3B Missense_Mutation p.V341M 0.17 tolerated(0.07) possibly_damaging(0.481) TCGA-MA-AA42-01 9 71395443 71395443 C T FAM122A Silent p.F121F 0.14 TCGA-MA-AA42-01 9 71532645 71532645 G A PIP5K1B Missense_Mutation p.G318E 0.24 tolerated(0.08) possibly_damaging(0.491) TCGA-MA-AA42-01 9 71863119 71863119 G A TJP2 Silent p.S984S 0.23 TCGA-MA-AA42-01 9 90498091 90498091 C T SPATA31E1 Silent p.P95P 0.43 TCGA-MA-AA42-01 9 96860017 96860017 T C PTPDC1 Missense_Mutation p.L388S 0.16 deleterious(0.01) possibly_damaging(0.777) TCGA-MA-AA42-01 X 100240704 100240704 T - ARL13A Frame_Shift_Del p.L61Cfs*2 0.14 TCGA-MA-AA42-01 X 101910627 101910627 G A GPRASP1 Missense_Mutation p.A596T 0.23 tolerated(1) benign(0.005) TCGA-MA-AA42-01 X 102319084 102319084 G A BEX1 5'UTR 0.36 TCGA-MA-AA42-01 X 102864786 102864786 C T TCEAL3 3'UTR 0.18 TCGA-MA-AA42-01 X 103080330 103080330 C G RAB9B Missense_Mutation p.E129Q 0.24 tolerated(0.1) benign(0.01) TCGA-MA-AA42-01 X 103432924 103432924 G A FAM199X Missense_Mutation p.M311I 0.14 tolerated(0.38) benign(0.001) TCGA-MA-AA42-01 X 10450620 10450620 A G MID1 Missense_Mutation p.C305R 0.11 deleterious(0.04) benign(0.02) TCGA-MA-AA42-01 X 105201278 105201278 T A NRK 3'UTR 0.12 TCGA-MA-AA42-01 X 105277573 105277573 C G SERPINA7 Missense_Mutation p.R389T 0.08 deleterious(0) possibly_damaging(0.661) TCGA-MA-AA42-01 X 107320275 107320275 C T VSIG1 Intron 0.24 TCGA-MA-AA42-01 X 107412843 107412843 A G COL4A6 Silent p.S1192S 0.11 TCGA-MA-AA42-01 X 115569030 115569030 A - SLC6A14 Frame_Shift_Del p.K42Nfs*8 0.14 TCGA-MA-AA42-01 X 123195080 123195080 G A STAG2 Missense_Mutation p.E475K 0.13 tolerated(0.23) possibly_damaging(0.668) TCGA-MA-AA42-01 X 123805671 123805671 C T TENM1 Missense_Mutation p.G344S 0.29 deleterious(0) possibly_damaging(0.728) TCGA-MA-AA42-01 X 125686475 125686475 G A DCAF12L1 Silent p.L39L 0.26 TCGA-MA-AA42-01 X 125686554 125686554 G A DCAF12L1 Missense_Mutation p.A13V 0.11 deleterious(0.05) benign(0.106) TCGA-MA-AA42-01 X 127185914 127185914 T C ACTRT1 Missense_Mutation p.H91R 0.10 deleterious(0) possibly_damaging(0.803) TCGA-MA-AA42-01 X 12739790 12739790 G A FRMPD4 3'UTR 0.12 TCGA-MA-AA42-01 X 12906355 12906355 G C TLR7 Missense_Mutation p.A910P 0.11 deleterious(0.02) benign(0.233) TCGA-MA-AA42-01 X 13055081 13055081 G C FAM9C 3'UTR 0.19 TCGA-MA-AA42-01 X 131209033 131209033 G A MST4 3'UTR 0.44 TCGA-MA-AA42-01 X 132838269 132838269 A G GPC3 Silent p.Y355Y 0.12 TCGA-MA-AA42-01 X 134556344 134556344 C T LINC00086 RNA 0.27 TCGA-MA-AA42-01 X 139585489 139585489 C T SOX3 3'UTR 0.12 TCGA-MA-AA42-01 X 140995027 140995027 C T MAGEC1 Nonsense_Mutation p.Q613* 0.22 TCGA-MA-AA42-01 X 147062980 147062980 C T FMR1NB Missense_Mutation p.R20C 0.11 tolerated(0.08) benign(0.14) TCGA-MA-AA42-01 X 1484089 1484089 G C IL3RA Missense_Mutation p.R273T 0.18 deleterious(0.01) benign(0.437) TCGA-MA-AA42-01 X 149924193 149924193 G A MTMR1 Silent p.S563S 0.10 TCGA-MA-AA42-01 X 152228061 152228061 C T PNMA3 3'UTR 0.10 TCGA-MA-AA42-01 X 152686597 152686597 C T ZFP92 Silent p.H254H 0.12 TCGA-MA-AA42-01 X 153223332 153223332 G A HCFC1 Silent p.S678S 0.16 TCGA-MA-AA42-01 X 153697532 153697532 G A PLXNA3 Missense_Mutation p.R1523H 0.26 deleterious(0) probably_damaging(0.973) TCGA-MA-AA42-01 X 154020517 154020517 G A MPP1 Missense_Mutation p.T49I 0.22 tolerated(0.12) possibly_damaging(0.493) TCGA-MA-AA42-01 X 154720995 154720995 C A TMLHE 3'UTR 0.15 TCGA-MA-AA42-01 X 155004674 155004674 G A SPRY3 3'UTR 0.23 TCGA-MA-AA42-01 X 155004810 155004810 C T SPRY3 3'UTR 0.11 TCGA-MA-AA42-01 X 16778835 16778835 T C SYAP1 3'UTR 0.10 TCGA-MA-AA42-01 X 17819503 17819503 C T RAI2 Missense_Mutation p.A210T 0.12 tolerated(0.42) unknown(0) TCGA-MA-AA42-01 X 18631334 18631334 C T CDKL5 Silent p.L739L 0.20 TCGA-MA-AA42-01 X 18972408 18972408 G A PHKA2 Silent p.R67R 0.10 TCGA-MA-AA42-01 X 19017328 19017328 C A GPR64 Silent p.L800L 0.31 TCGA-MA-AA42-01 X 21613158 21613158 A - CNKSR2 Frame_Shift_Del p.K634Nfs*24 0.11 TCGA-MA-AA42-01 X 27839538 27839538 C - MAGEB10 Frame_Shift_Del p.S41Lfs*6 0.18 TCGA-MA-AA42-01 X 29973740 29973740 G A IL1RAPL1 Missense_Mutation p.V632I 0.06 tolerated_low_confidence(0.36) benign(0.001) TCGA-MA-AA42-01 X 31089935 31089935 C A FTHL17 Missense_Mutation p.D46Y 0.19 deleterious(0.01) possibly_damaging(0.904) TCGA-MA-AA42-01 X 3235405 3235405 G A MXRA5 Missense_Mutation p.T2106M 0.12 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 X 3242969 3242969 A G MXRA5 Missense_Mutation p.C253R 0.23 deleterious(0) probably_damaging(0.999) TCGA-MA-AA42-01 X 32486749 32486749 C A DMD Missense_Mutation p.A1010S 0.20 benign(0.09) TCGA-MA-AA42-01 X 34674971 34674971 C T TMEM47 Missense_Mutation p.R59Q 0.08 tolerated(0.63) benign(0.028) TCGA-MA-AA42-01 X 34962607 34962607 C T FAM47B Silent p.F553F 0.24 TCGA-MA-AA42-01 X 45606472 45606472 G A MIR222 RNA 0.17 TCGA-MA-AA42-01 X 48433607 48433607 C G RBM3 Silent p.L13L 0.17 TCGA-MA-AA42-01 X 49645374 49645374 G A USP27X Missense_Mutation p.R155H 0.26 deleterious(0.02) probably_damaging(0.985) TCGA-MA-AA42-01 X 49957197 49957197 C G AKAP4 Missense_Mutation p.E723Q 0.18 deleterious(0.02) probably_damaging(0.938) TCGA-MA-AA42-01 X 50136216 50136216 C T DGKK RNA 0.16 TCGA-MA-AA42-01 X 51150875 51150875 G A CXorf67 Missense_Mutation p.S336N 0.09 tolerated(0.28) possibly_damaging(0.859) TCGA-MA-AA42-01 X 53559876 53559877 AA - HUWE1 3'UTR 0.17 TCGA-MA-AA42-01 X 63412596 63412596 C T AMER1 Missense_Mutation p.E191K 0.19 tolerated(0.05) benign(0.098) TCGA-MA-AA42-01 X 64723084 64723084 C T ZC3H12B Missense_Mutation p.R836C 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-MA-AA42-01 X 65241789 65241789 C T VSIG4 3'UTR 0.22 TCGA-MA-AA42-01 X 65253669 65253669 C T VSIG4 Missense_Mutation p.R20H 0.23 tolerated(1) benign(0) TCGA-MA-AA42-01 X 65423346 65423347 - A HEPH Frame_Shift_Ins p.E795Rfs*9 0.12 TCGA-MA-AA42-01 X 65475968 65475968 G A HEPH Missense_Mutation p.G952R 0.17 deleterious(0) probably_damaging(0.993) TCGA-MA-AA42-01 X 69255950 69255950 C T EDA 3'UTR 0.32 TCGA-MA-AA42-01 X 69460067 69460067 C T AWAT1 Missense_Mutation p.A305V 0.14 deleterious(0) probably_damaging(1) TCGA-MA-AA42-01 X 70323256 70323256 C A FOXO4 3'UTR 0.10 TCGA-MA-AA42-01 X 70522320 70522320 C T ITGB1BP2 Silent p.G77G 0.22 TCGA-MA-AA42-01 X 71354452 71354453 - A NHSL2 Frame_Shift_Ins p.T221Nfs*5 0.15 TCGA-MA-AA42-01 X 72297617 72297617 G A PABPC1L2A 3'UTR 0.15 TCGA-MA-AA42-01 X 73962259 73962259 C - KIAA2022 Frame_Shift_Del p.P712Qfs*17 0.08 TCGA-MA-AA42-01 X 84363065 84363065 A G SATL1 Missense_Mutation p.S304P 0.19 tolerated(0.33) possibly_damaging(0.898) TCGA-MA-AA42-01 X 99934391 99934391 C - SYTL4 Frame_Shift_Del p.G526Efs*13 0.10 TCGA-MA-AA43-01 10 134041620 134041620 G T STK32C Missense_Mutation p.Q111K 0.19 deleterious(0) possibly_damaging(0.781) TCGA-MA-AA43-01 10 134896349 134896349 G A GPR123-AS1 3'Flank 0.15 TCGA-MA-AA43-01 10 27963876 27963876 C T MKX 3'UTR 0.07 TCGA-MA-AA43-01 10 52575844 52575844 C A A1CF Missense_Mutation p.A363S 0.29 tolerated(0.21) benign(0.389) TCGA-MA-AA43-01 10 8116342 8116342 G T GATA3 3'UTR 0.40 TCGA-MA-AA43-01 10 81276111 81276111 G A EIF5AL1 3'UTR 0.16 TCGA-MA-AA43-01 10 99350030 99350030 G A C10orf62 Missense_Mutation p.A126T 0.15 tolerated(0.11) benign(0.171) TCGA-MA-AA43-01 11 30253527 30253527 C T FSHB Silent p.I26I 0.26 TCGA-MA-AA43-01 11 82868233 82868233 C G PCF11 5'UTR 0.22 TCGA-MA-AA43-01 11 85780097 85780097 A - PICALM 5'Flank 0.11 TCGA-MA-AA43-01 12 124317867 124317867 G A DNAH10 Silent p.T1466T 0.28 TCGA-MA-AA43-01 12 125449031 125449031 C T DHX37 Missense_Mutation p.V652I 0.23 tolerated(0.07) possibly_damaging(0.514) TCGA-MA-AA43-01 12 126138776 126138776 C T TMEM132B Silent p.C919C 0.35 TCGA-MA-AA43-01 12 54763223 54763223 C T ZNF385A 3'UTR 0.26 TCGA-MA-AA43-01 12 89744637 89744637 T C DUSP6 Missense_Mutation p.N189S 0.33 tolerated(1) benign(0) TCGA-MA-AA43-01 13 86367976 86367979 TTTC - SLITRK6 3'UTR 0.16 TCGA-MA-AA43-01 14 20444585 20444585 C T OR4K15 Missense_Mutation p.T303M 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-MA-AA43-01 14 37777691 37777691 A C MIPOL1 Silent p.A265A 0.12 TCGA-MA-AA43-01 14 38680593 38680593 C T SSTR1 3'UTR 0.12 TCGA-MA-AA43-01 14 89626996 89626996 G A FOXN3 3'UTR 0.13 TCGA-MA-AA43-01 14 95598990 95598990 C T DICER1 Missense_Mutation p.D57N 0.11 tolerated(0.06) benign(0.409) TCGA-MA-AA43-01 14 96731040 96731040 T A BDKRB1 Missense_Mutation p.S341T 0.07 tolerated(0.31) benign(0.004) TCGA-MA-AA43-01 15 37392585 37392585 G A MEIS2 5'Flank 0.15 TCGA-MA-AA43-01 15 74315581 74315581 T A PML Missense_Mutation p.Y339N 0.21 deleterious(0) probably_damaging(0.996) TCGA-MA-AA43-01 15 78894182 78894182 C T CHRNA3 Missense_Mutation p.D268N 0.28 deleterious(0.04) probably_damaging(1) TCGA-MA-AA43-01 15 88690572 88690572 C T NTRK3 Missense_Mutation p.R153Q 0.23 tolerated(0.5) benign(0.001) TCGA-MA-AA43-01 16 5058526 5058526 G A SEC14L5 Silent p.R559R 0.53 TCGA-MA-AA43-01 16 70778352 70778352 C A VAC14 Missense_Mutation p.G501V 0.47 tolerated(0.36) benign(0) TCGA-MA-AA43-01 17 34073223 34073223 G A GAS2L2 Silent p.D431D 0.12 TCGA-MA-AA43-01 17 43246866 43246866 C T HEXIM2 Missense_Mutation p.A184V 0.13 tolerated(0.2) benign(0.016) TCGA-MA-AA43-01 17 57784890 57784890 C T VMP1 5'UTR 0.25 TCGA-MA-AA43-01 18 33848521 33848521 A T MOCOS Missense_Mutation p.H847L 0.19 deleterious(0.01) probably_damaging(0.944) TCGA-MA-AA43-01 18 47527722 47527722 G A MYO5B Missense_Mutation p.S172L 0.15 deleterious(0) probably_damaging(1) TCGA-MA-AA43-01 18 6965404 6965404 G A LAMA1 Missense_Mutation p.R2360C 0.11 deleterious(0) possibly_damaging(0.773) TCGA-MA-AA43-01 19 11618377 11618377 C T ECSIT Missense_Mutation p.E316K 0.25 tolerated(0.56) benign(0.003) TCGA-MA-AA43-01 19 16923628 16923628 G A NWD1 Intron 0.12 TCGA-MA-AA43-01 19 16973308 16973308 C T SIN3B Missense_Mutation p.R402W 0.14 deleterious(0.05) possibly_damaging(0.874) TCGA-MA-AA43-01 19 36357136 36357136 C T KIRREL2 Silent p.L623L 0.12 TCGA-MA-AA43-01 19 50462121 50462121 A T SIGLEC11 Missense_Mutation p.V381D 0.13 deleterious(0) probably_damaging(0.987) TCGA-MA-AA43-01 19 54244592 54244592 G A MIR517C RNA 0.09 TCGA-MA-AA43-01 1 151288276 151288276 G A PI4KB Nonsense_Mutation p.Q240* 0.26 TCGA-MA-AA43-01 1 153751673 153751673 G A SLC27A3 Missense_Mutation p.G624E 0.17 deleterious(0) probably_damaging(1) TCGA-MA-AA43-01 1 158152834 158152834 C T CD1D Silent p.D258D 0.15 TCGA-MA-AA43-01 1 160001342 160001342 G C PIGM Missense_Mutation p.T63R 0.16 deleterious(0.02) possibly_damaging(0.609) TCGA-MA-AA43-01 1 178001600 178001601 TA G RP11-568K15.1 RNA 0.17 TCGA-MA-AA43-01 1 201458011 201458011 G A CSRP1 Missense_Mutation p.A128V 0.08 deleterious(0.04) benign(0.236) TCGA-MA-AA43-01 1 207218690 207218690 G A YOD1 3'UTR 0.16 TCGA-MA-AA43-01 1 216246464 216246464 G A USH2A Silent p.Y1917Y 0.20 TCGA-MA-AA43-01 1 32121093 32121093 C T COL16A1 Missense_Mutation p.G1371E 0.12 unknown(0) TCGA-MA-AA43-01 1 48688549 48688549 C T SLC5A9 Silent p.F47F 0.22 TCGA-MA-AA43-01 1 84948637 84948637 C T RPF1 Nonsense_Mutation p.R109* 0.21 TCGA-MA-AA43-01 1 908662 908662 G A PLEKHN1 Missense_Mutation p.E417K 0.17 tolerated(0.23) benign(0.187) TCGA-MA-AA43-01 1 94027838 94027838 C T BCAR3 Missense_Mutation p.R813H 0.11 tolerated(0.66) probably_damaging(0.972) TCGA-MA-AA43-01 1 99772625 99772625 T C LPPR4 3'UTR 0.11 TCGA-MA-AA43-01 20 23016462 23016462 C T SSTR4 Silent p.F114F 0.24 TCGA-MA-AA43-01 20 31437626 31437626 C A MAPRE1 3'UTR 0.10 TCGA-MA-AA43-01 20 33711758 33711758 G A EDEM2 Missense_Mutation p.P350L 0.10 deleterious(0) probably_damaging(1) TCGA-MA-AA43-01 20 36718847 36718847 G A RPRD1B 3'UTR 0.11 TCGA-MA-AA43-01 20 37551453 37551453 A T PPP1R16B 3'UTR 0.12 TCGA-MA-AA43-01 20 377928 377928 C T TRIB3 3'UTR 0.45 TCGA-MA-AA43-01 20 40709428 40709428 A T PTPRT 3'UTR 0.11 TCGA-MA-AA43-01 20 44037574 44037574 G A DBNDD2 Silent p.S193S 0.06 TCGA-MA-AA43-01 20 62221877 62221877 C T GMEB2 Silent p.P386P 0.28 TCGA-MA-AA43-01 21 44182243 44182243 C T PDE9A Missense_Mutation p.S379L 0.27 deleterious(0) probably_damaging(0.999) TCGA-MA-AA43-01 22 17599336 17599336 G C CECR6 3'UTR 0.18 TCGA-MA-AA43-01 22 31534690 31534690 G A PLA2G3 Nonsense_Mutation p.R204* 0.27 TCGA-MA-AA43-01 2 179600669 179600669 A T TTN Missense_Mutation p.L4835H 0.20 TCGA-MA-AA43-01 2 85778996 85778997 - A GGCX Frame_Shift_Ins p.L516Ffs*13 0.22 TCGA-MA-AA43-01 3 13361269 13361269 C T NUP210 Missense_Mutation p.G1793S 0.14 tolerated(0.47) benign(0.003) TCGA-MA-AA43-01 3 49154323 49154323 G A USP19 Silent p.L321L 0.44 TCGA-MA-AA43-01 3 78701019 78701019 T C ROBO1 Missense_Mutation p.D892G 0.14 tolerated(0.09) benign(0.411) TCGA-MA-AA43-01 4 106197188 106197188 G A TET2 Missense_Mutation p.E1841K 0.27 tolerated(0.05) possibly_damaging(0.608) TCGA-MA-AA43-01 4 1389576 1389576 G A CRIPAK Missense_Mutation p.G426D 0.22 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-MA-AA43-01 4 57776937 57776937 C T REST Nonsense_Mutation p.Q45* 0.28 TCGA-MA-AA43-01 5 140559577 140559577 G A PCDHB8 Silent p.S654S 0.14 TCGA-MA-AA43-01 5 76926238 76926238 C T OTP Missense_Mutation p.V277M 0.19 tolerated(0.14) benign(0.002) TCGA-MA-AA43-01 5 90445897 90445897 C - GPR98 Frame_Shift_Del p.P6162Lfs*2 0.12 TCGA-MA-AA43-01 6 105736771 105736771 T C PREP Splice_Site p.X440_splice 0.10 TCGA-MA-AA43-01 6 114378489 114378489 G A HS3ST5 Missense_Mutation p.R325C 0.19 tolerated(0.15) benign(0.009) TCGA-MA-AA43-01 6 143755088 143755088 C T ADAT2 Missense_Mutation p.D78N 0.25 deleterious(0) possibly_damaging(0.855) TCGA-MA-AA43-01 6 165752798 165752798 C A PDE10A Missense_Mutation p.R716I 0.16 deleterious(0) probably_damaging(1) TCGA-MA-AA43-01 6 33689613 33689613 G A IP6K3 3'UTR 0.13 TCGA-MA-AA43-01 6 47869046 47869046 T C PTCHD4 Intron 0.21 TCGA-MA-AA43-01 6 65532689 65532689 C A EYS Nonsense_Mutation p.E1007* 0.16 TCGA-MA-AA43-01 6 76380399 76380399 T G SENP6 Missense_Mutation p.V452G 0.35 deleterious(0) possibly_damaging(0.876) TCGA-MA-AA43-01 6 8419048 8419048 C T SLC35B3 Intron 0.14 TCGA-MA-AA43-01 7 23357272 23357272 C T IGF2BP3 Missense_Mutation p.E461K 0.20 deleterious(0) probably_damaging(0.97) TCGA-MA-AA43-01 8 10468129 10468129 C T RP1L1 Missense_Mutation p.G1160E 0.17 probably_damaging(0.988) TCGA-MA-AA43-01 8 11301942 11301942 C T FAM167A 5'UTR 0.22 TCGA-MA-AA43-01 8 133900483 133900483 G T TG Nonsense_Mutation p.E811* 0.23 TCGA-MA-AA43-01 8 145623052 145623052 C T CPSF1 Missense_Mutation p.G706S 0.16 deleterious(0) probably_damaging(0.955) TCGA-MA-AA43-01 8 145726915 145726915 G A PPP1R16A Missense_Mutation p.E406K 0.06 tolerated(0.58) benign(0.007) TCGA-MA-AA43-01 8 94738699 94738712 TCAGAGATCACTGT G FAM92A1 Frame_Shift_Del p.R247Lfs*15 0.10 TCGA-MA-AA43-01 9 84609331 84609331 C T SPATA31D1 Missense_Mutation p.R1316C 0.21 tolerated(0.18) benign(0.077) TCGA-MA-AA43-01 X 11783868 11783868 C T MSL3 Intron 0.14 TCGA-MA-AA43-01 X 23802163 23802164 - A SAT1 Intron 0.27 TCGA-MA-AA43-01 X 34149288 34149288 G A FAM47A Missense_Mutation p.R370C 0.29 deleterious(0.02) probably_damaging(0.93) TCGA-MA-AA43-01 X 47063090 47063090 G A UBA1 Missense_Mutation p.V524I 0.61 tolerated(0.27) possibly_damaging(0.558) TCGA-MA-AA43-01 X 56755897 56755897 G A RP11-622K12.1 RNA 0.42 TCGA-MA-AA43-01 X 63407348 63407348 C T AMER1 3'UTR 0.15 TCGA-MA-AA43-01 X 79278567 79278567 C A TBX22 Missense_Mutation p.P62T 0.34 tolerated(0.15) benign(0.024) TCGA-MU-A5YI-01 10 105353948 105353948 G C SH3PXD2A 3'UTR 0.54 TCGA-MU-A5YI-01 10 105727515 105727515 C T SLK Silent p.F4F 0.15 TCGA-MU-A5YI-01 10 70738628 70738628 A G DDX21 Missense_Mutation p.I645V 0.35 tolerated(0.56) benign(0.002) TCGA-MU-A5YI-01 11 118528236 118528236 C T TREH 3'Flank 0.55 TCGA-MU-A5YI-01 11 15134022 15134022 C T INSC Missense_Mutation p.R3W 0.25 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-MU-A5YI-01 11 19251245 19251245 G A E2F8 Missense_Mutation p.S550F 0.62 tolerated(0.24) benign(0.372) TCGA-MU-A5YI-01 11 72006666 72006666 C G CLPB Missense_Mutation p.K482N 0.50 tolerated(0.06) possibly_damaging(0.733) TCGA-MU-A5YI-01 11 9074758 9074758 C T SCUBE2 Silent p.V445V 0.19 TCGA-MU-A5YI-01 12 113401136 113401136 C T OAS3 Silent p.P701P 0.77 TCGA-MU-A5YI-01 12 23999045 23999045 C T SOX5 Missense_Mutation p.R118Q 0.87 deleterious(0.01) probably_damaging(0.99) TCGA-MU-A5YI-01 12 31267847 31267847 C T RP11-551L14.1 RNA 0.29 TCGA-MU-A5YI-01 12 52163093 52163093 G A SCN8A Missense_Mutation p.E1116K 0.62 tolerated(0.21) benign(0.362) TCGA-MU-A5YI-01 12 78415569 78415569 C A NAV3 Missense_Mutation p.D650E 0.73 tolerated(1) benign(0.034) TCGA-MU-A5YI-01 12 80014939 80014939 G A PAWR Nonsense_Mutation p.R189* 0.71 TCGA-MU-A5YI-01 13 108861165 108861165 C T LIG4 Missense_Mutation p.V818I 0.15 tolerated(0.72) benign(0.003) TCGA-MU-A5YI-01 13 20279968 20279968 G A PSPC1 Missense_Mutation p.A407V 0.14 tolerated(0.15) benign(0.028) TCGA-MU-A5YI-01 13 52508821 52508821 C A ATP7B 3'UTR 0.48 TCGA-MU-A5YI-01 14 22447345 22447345 T C TRAV8-6 Missense_Mutation p.F109S 0.07 deleterious(0) probably_damaging(0.991) TCGA-MU-A5YI-01 14 39501381 39501381 C G SEC23A 3'UTR 0.23 TCGA-MU-A5YI-01 14 94008991 94008991 C T UNC79 Silent p.R391R 0.25 TCGA-MU-A5YI-01 15 100256800 100256800 T C DKFZP779J2370 Missense_Mutation p.K68R 0.07 unknown(0) TCGA-MU-A5YI-01 15 33026484 33026484 C T GREM1 3'UTR 0.11 TCGA-MU-A5YI-01 15 35044752 35044752 C T GJD2 Missense_Mutation p.R298H 0.27 tolerated(0.06) probably_damaging(0.951) TCGA-MU-A5YI-01 15 42676699 42676699 C T CAPN3 Nonsense_Mutation p.R110* 0.30 TCGA-MU-A5YI-01 15 64967417 64967417 C G ZNF609 Missense_Mutation p.I788M 0.14 tolerated(0.07) benign(0.332) TCGA-MU-A5YI-01 16 30581408 30581408 G A ZNF688 Silent p.F220F 0.48 TCGA-MU-A5YI-01 16 4606764 4606764 G A C16orf96 Missense_Mutation p.E92K 0.16 deleterious(0) probably_damaging(0.997) TCGA-MU-A5YI-01 16 49671686 49671686 G A ZNF423 Silent p.H459H 0.35 TCGA-MU-A5YI-01 16 50750827 50750827 G A NOD2 Missense_Mutation p.G858S 0.35 tolerated(0.67) benign(0.016) TCGA-MU-A5YI-01 16 67841097 67841097 G C TSNAXIP1 5'UTR 0.24 TCGA-MU-A5YI-01 16 70514795 70514795 G C COG4 3'UTR 0.44 TCGA-MU-A5YI-01 17 1634405 1634405 G A WDR81 Missense_Mutation p.R1337H 0.62 deleterious(0.01) probably_damaging(1) TCGA-MU-A5YI-01 17 17927999 17927999 C T ATPAF2 Missense_Mutation p.E148K 0.29 tolerated(0.42) benign(0.027) TCGA-MU-A5YI-01 17 20919144 20919144 C T USP22 Silent p.R253R 0.32 TCGA-MU-A5YI-01 17 29864839 29864839 G C RAB11FIP4 3'UTR 0.47 TCGA-MU-A5YI-01 17 39135243 39135243 C T KRT40 Missense_Mutation p.E337K 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-MU-A5YI-01 17 39254350 39254350 G A KRTAP4-8 5'UTR 0.37 TCGA-MU-A5YI-01 17 72832676 72832676 G A TMEM104 Silent p.R447R 0.31 TCGA-MU-A5YI-01 17 729261 729261 C T NXN Missense_Mutation p.A140T 0.09 tolerated(0.06) benign(0.116) TCGA-MU-A5YI-01 17 78082385 78082385 G A GAA Missense_Mutation p.M391I 0.34 deleterious(0.01) probably_damaging(0.922) TCGA-MU-A5YI-01 18 67993397 67993397 G A SOCS6 Missense_Mutation p.R498H 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-MU-A5YI-01 19 15563539 15563539 G A RASAL3 Missense_Mutation p.R920W 0.07 tolerated(0.08) possibly_damaging(0.724) TCGA-MU-A5YI-01 19 49254068 49254068 C G FUT1 Missense_Mutation p.L157F 0.38 deleterious(0.04) probably_damaging(0.968) TCGA-MU-A5YI-01 19 54804218 54804218 G A LILRA3 5'UTR 0.38 TCGA-MU-A5YI-01 1 150547232 150547232 C G MCL1 3'UTR 0.26 TCGA-MU-A5YI-01 1 151377334 151377334 C G POGZ Missense_Mutation p.E1393Q 0.38 deleterious(0.03) probably_damaging(0.993) TCGA-MU-A5YI-01 1 153312886 153312886 G C PGLYRP4 Missense_Mutation p.D265E 0.28 tolerated(0.06) benign(0.144) TCGA-MU-A5YI-01 1 156177791 156177791 G A SLC25A44 Missense_Mutation p.R247Q 0.12 deleterious(0) possibly_damaging(0.893) TCGA-MU-A5YI-01 1 18811677 18811677 G C KLHDC7A 3'UTR 0.35 TCGA-MU-A5YI-01 1 19401341 19401341 C T UBR4 Silent p.L5179L 0.29 TCGA-MU-A5YI-01 1 27874770 27874770 C T AHDC1 Missense_Mutation p.R1286Q 0.36 tolerated(0.08) benign(0.417) TCGA-MU-A5YI-01 1 65298045 65298049 AAGTT - RAVER2 3'UTR 0.30 TCGA-MU-A5YI-01 1 68906582 68906582 A T RPE65 Missense_Mutation p.N199K 0.28 tolerated(0.87) benign(0.197) TCGA-MU-A5YI-01 20 3053016 3053016 C T OXT Silent p.C110C 0.08 TCGA-MU-A5YI-01 20 34219869 34219869 C T CPNE1 Missense_Mutation p.E184K 0.34 deleterious(0) probably_damaging(1) TCGA-MU-A5YI-01 21 33065619 33065619 C T SCAF4 Missense_Mutation p.E501K 0.27 possibly_damaging(0.678) TCGA-MU-A5YI-01 22 18387564 18387564 G A MICAL3 Silent p.A102A 0.17 TCGA-MU-A5YI-01 22 21403289 21403289 C T AC002472.13 Silent p.L155L 0.41 TCGA-MU-A5YI-01 22 25750617 25750617 C T LRP5L Missense_Mutation p.D201N 0.33 deleterious(0.03) benign(0.064) TCGA-MU-A5YI-01 2 152375507 152375507 A T NEB Missense_Mutation p.V7556D 0.26 probably_damaging(0.964) TCGA-MU-A5YI-01 2 167298182 167298182 C T SCN7A Silent p.L627L 0.09 TCGA-MU-A5YI-01 2 172182597 172182597 G A METTL8 Nonsense_Mutation p.R308* 0.25 TCGA-MU-A5YI-01 2 172964627 172964628 - A DLX2 3'UTR 0.16 TCGA-MU-A5YI-01 2 179446852 179446852 C G TTN Missense_Mutation p.D22082H 0.44 TCGA-MU-A5YI-01 2 219093481 219093481 C T ARPC2 Missense_Mutation p.H44Y 0.45 deleterious(0) probably_damaging(0.986) TCGA-MU-A5YI-01 2 228111453 228111453 C T COL4A3 Missense_Mutation p.P147L 0.23 possibly_damaging(0.718) TCGA-MU-A5YI-01 2 25180768 25180768 C T DNAJC27 Missense_Mutation p.A106T 0.10 tolerated(0.2) benign(0.037) TCGA-MU-A5YI-01 2 49190835 49190835 C T FSHR Silent p.L375L 0.23 TCGA-MU-A5YI-01 2 61169398 61169398 A G PUS10 3'UTR 0.30 TCGA-MU-A5YI-01 2 74699552 74699553 AT - MRPL53 Frame_Shift_Del p.N46Tfs*12 0.26 TCGA-MU-A5YI-01 2 8926071 8926071 G A KIDINS220 Silent p.L677L 0.44 TCGA-MU-A5YI-01 2 8930035 8930035 G A KIDINS220 Silent p.F532F 0.25 TCGA-MU-A5YI-01 3 119132712 119132712 G A ARHGAP31 Missense_Mutation p.D646N 0.46 deleterious(0.05) probably_damaging(0.929) TCGA-MU-A5YI-01 3 170425957 170425957 G T CLDN11 3'UTR 0.11 TCGA-MU-A5YI-01 3 185655769 185655769 C G TRA2B 5'UTR 0.15 TCGA-MU-A5YI-01 3 27203800 27203800 G A NEK10 3'UTR 0.56 TCGA-MU-A5YI-01 3 50251894 50251894 C A SLC38A3 RNA 0.64 TCGA-MU-A5YI-01 3 7782206 7782206 C T GRM7 3'UTR 0.60 TCGA-MU-A5YI-01 4 144142590 144142590 C A USP38 3'UTR 0.38 TCGA-MU-A5YI-01 5 140174652 140174652 G A PCDHA2 Missense_Mutation p.V35I 0.27 tolerated_low_confidence(0.15) benign(0.319) TCGA-MU-A5YI-01 5 147040796 147040796 G A JAKMIP2 Silent p.L114L 0.41 TCGA-MU-A5YI-01 5 175307939 175307939 G A CPLX2 3'UTR 0.42 TCGA-MU-A5YI-01 5 175774645 175774645 G C KIAA1191 Silent p.L292L 0.30 TCGA-MU-A5YI-01 5 179294775 179294775 C G TBC1D9B Intron 0.45 TCGA-MU-A5YI-01 5 38957826 38957826 G A RICTOR Silent p.L809L 0.33 TCGA-MU-A5YI-01 6 30680439 30680439 C T MDC1 Nonsense_Mutation p.W427* 0.44 TCGA-MU-A5YI-01 6 35715376 35715376 C T ARMC12 Silent p.S241S 0.26 TCGA-MU-A5YI-01 6 46661389 46661389 G C TDRD6 Missense_Mutation p.D1842H 0.25 tolerated(0.06) possibly_damaging(0.868) TCGA-MU-A5YI-01 7 113518693 113518693 C T PPP1R3A Silent p.E818E 0.27 TCGA-MU-A5YI-01 7 141955406 141955406 C T PRSS58 Missense_Mutation p.G43E 0.33 deleterious(0) probably_damaging(1) TCGA-MU-A5YI-01 7 147964216 147964216 T C CNTNAP2 Missense_Mutation p.I1158T 0.17 tolerated(0.68) benign(0.425) TCGA-MU-A5YI-01 7 37960261 37960261 G C EPDR1 5'UTR 0.29 TCGA-MU-A5YI-01 7 55605247 55605247 C T VOPP1 Intron 0.23 TCGA-MU-A5YI-01 7 87229461 87229461 T C ABCB1 Missense_Mutation p.K14E 0.42 tolerated(1) benign(0.001) TCGA-MU-A5YI-01 8 53570460 53570460 C G RB1CC1 Silent p.V643V 0.27 TCGA-MU-A5YI-01 8 61736418 61736418 C A CHD7 Missense_Mutation p.S1074Y 0.23 possibly_damaging(0.821) TCGA-MU-A5YI-01 9 139412245 139412245 C T NOTCH1 Missense_Mutation p.C467Y 0.34 deleterious(0) probably_damaging(1) TCGA-MU-A5YI-01 X 123512113 123512113 G A TENM1 3'UTR 0.10 TCGA-MU-A5YI-01 X 125684405 125684405 C G DCAF12L1 3'UTR 0.26 TCGA-MU-A5YI-01 X 132730622 132730622 C T GPC3 Silent p.L496L 0.32 TCGA-MU-A5YI-01 X 147032116 147032116 G T FMR1 3'UTR 0.34 TCGA-MU-A5YI-01 X 17744047 17744047 C G NHS Missense_Mutation p.I586M 0.19 deleterious(0.01) possibly_damaging(0.867) TCGA-MU-A5YI-01 X 17744197 17744197 C G NHS Silent p.L636L 0.18 TCGA-MU-A5YI-01 X 47486553 47486553 C A CFP Silent p.L251L 0.21 TCGA-MU-A5YI-01 X 48317943 48317943 G C SLC38A5 Missense_Mutation p.F432L 0.16 tolerated(1) benign(0.001) TCGA-MU-A5YI-01 X 5827180 5827180 G A NLGN4X Silent p.G242G 0.22 TCGA-MU-A5YI-01 X 79936929 79936929 G A BRWD3 Missense_Mutation p.S1522L 0.22 deleterious_low_confidence(0.01) benign(0.148) TCGA-MU-A8JM-01 10 105891151 105891151 C T WDR96 Missense_Mutation p.S1590N 0.27 deleterious(0.02) possibly_damaging(0.667) TCGA-MU-A8JM-01 10 37430932 37430932 T C ANKRD30A Silent p.S313S 0.19 TCGA-MU-A8JM-01 10 5415689 5415689 G C UCN3 Silent p.L2L 0.21 TCGA-MU-A8JM-01 10 76803604 76803604 G A DUPD1 Silent p.F124F 0.28 TCGA-MU-A8JM-01 10 99375029 99375029 G A MORN4 3'UTR 0.25 TCGA-MU-A8JM-01 11 118405229 118405229 C G TMEM25 Missense_Mutation p.I345M 0.27 deleterious(0.04) benign(0.322) TCGA-MU-A8JM-01 11 124412776 124412776 G C OR8B12 Missense_Mutation p.L259V 0.25 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-MU-A8JM-01 11 132285911 132285911 C G OPCML 3'UTR 0.25 TCGA-MU-A8JM-01 11 46776573 46776573 G A CKAP5 Silent p.S1578S 0.28 TCGA-MU-A8JM-01 11 56185643 56185643 C A OR5R1 Missense_Mutation p.E22D 0.32 tolerated(0.09) possibly_damaging(0.546) TCGA-MU-A8JM-01 11 56954988 56954988 C T LRRC55 3'UTR 0.25 TCGA-MU-A8JM-01 11 607155 607156 - GGGCC PHRF1 Frame_Shift_Ins p.S567Afs*35 0.33 TCGA-MU-A8JM-01 11 86662198 86662198 C G FZD4 Missense_Mutation p.E534Q 0.33 tolerated(0.14) probably_damaging(0.968) TCGA-MU-A8JM-01 12 1005858 1005858 G A WNK1 Missense_Mutation p.D2069N 0.45 deleterious(0) probably_damaging(0.999) TCGA-MU-A8JM-01 12 131622725 131622725 C A GPR133 Missense_Mutation p.T827K 0.21 deleterious(0) benign(0.411) TCGA-MU-A8JM-01 12 48181891 48181891 G A HDAC7 Silent p.L764L 0.30 TCGA-MU-A8JM-01 12 49496289 49496289 G A LMBR1L Missense_Mutation p.S244L 0.14 tolerated(0.65) benign(0.338) TCGA-MU-A8JM-01 12 57118290 57118290 T C NACA Missense_Mutation p.T6A 0.17 deleterious_low_confidence(0) benign(0.388) TCGA-MU-A8JM-01 13 103493476 103493476 C T BIVM 3'UTR 0.24 TCGA-MU-A8JM-01 13 28608474 28608474 G A FLT3 Silent p.V556V 0.32 TCGA-MU-A8JM-01 13 64413246 64413246 G A RP11-394A14.2 RNA 0.29 TCGA-MU-A8JM-01 14 107259163 107259163 C T hsa-mir-5195 RNA 0.23 TCGA-MU-A8JM-01 14 23540699 23540699 G A ACIN1 Intron 0.28 TCGA-MU-A8JM-01 14 44973828 44973828 G A FSCB Missense_Mutation p.S788L 0.28 tolerated(1) unknown(0) TCGA-MU-A8JM-01 14 71196739 71196739 G A MAP3K9 3'UTR 0.20 TCGA-MU-A8JM-01 14 71455301 71455301 G C PCNX Missense_Mutation p.E777Q 0.21 deleterious(0.01) possibly_damaging(0.608) TCGA-MU-A8JM-01 14 74196571 74196571 C G ELMSAN1 Missense_Mutation p.V623L 0.28 tolerated(0.16) benign(0.397) TCGA-MU-A8JM-01 14 76211909 76211909 C A TTLL5 Missense_Mutation p.T491K 0.26 deleterious(0) benign(0.013) TCGA-MU-A8JM-01 14 93142840 93142840 G T RIN3 Missense_Mutation p.D786Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-MU-A8JM-01 14 96783564 96783564 G C ATG2B Missense_Mutation p.S1043C 0.22 deleterious(0.04) benign(0.219) TCGA-MU-A8JM-01 15 45559965 45559965 G C SLC28A2 Missense_Mutation p.K390N 0.26 tolerated(0.09) probably_damaging(0.932) TCGA-MU-A8JM-01 15 65862458 65862458 C T PTPLAD1 Silent p.I230I 0.19 TCGA-MU-A8JM-01 15 74467686 74467686 G A ISLR Missense_Mutation p.E163K 0.38 deleterious(0.05) possibly_damaging(0.594) TCGA-MU-A8JM-01 15 78786262 78786262 G A IREB2 Missense_Mutation p.R779H 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-MU-A8JM-01 16 105857 105857 G A SNRNP25 Missense_Mutation p.E81K 0.24 tolerated(0.15) benign(0.131) TCGA-MU-A8JM-01 16 10625832 10625832 C T EMP2 3'UTR 0.34 TCGA-MU-A8JM-01 16 1448771 1448771 G - UNKL Intron 0.23 TCGA-MU-A8JM-01 16 1448831 1448831 G A UNKL Intron 0.28 TCGA-MU-A8JM-01 16 14761489 14761489 C T BFAR Intron 0.33 TCGA-MU-A8JM-01 16 14761711 14761711 C T BFAR 3'UTR 0.38 TCGA-MU-A8JM-01 16 15131989 15131990 - T NTAN1 Frame_Shift_Ins p.H278Tfs*13 0.31 TCGA-MU-A8JM-01 16 29820967 29820967 G A MAZ Silent p.K462K 0.38 TCGA-MU-A8JM-01 16 29821575 29821575 G A MAZ 3'UTR 0.31 TCGA-MU-A8JM-01 16 30035912 30035912 G T FAM57B 3'UTR 0.34 TCGA-MU-A8JM-01 16 30750125 30750125 C T SRCAP Nonsense_Mutation p.Q2922* 0.09 TCGA-MU-A8JM-01 16 31499038 31499038 C G SLC5A2 Silent p.L281L 0.30 TCGA-MU-A8JM-01 16 4524151 4524151 G A NMRAL1 5'UTR 0.24 TCGA-MU-A8JM-01 16 48382190 48382190 C T LONP2 Missense_Mutation p.L776F 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-MU-A8JM-01 16 57762412 57762412 G T CCDC135 Silent p.A769A 0.40 TCGA-MU-A8JM-01 16 70253499 70253499 T C FKSG63 5'Flank 0.14 TCGA-MU-A8JM-01 16 83949093 83949093 G A MLYCD Silent p.%3D 0.21 TCGA-MU-A8JM-01 16 84230645 84230645 C G ADAD2 3'UTR 0.25 TCGA-MU-A8JM-01 16 88747856 88747856 G A SNAI3 Missense_Mutation p.P115S 0.28 tolerated(0.16) benign(0.002) TCGA-MU-A8JM-01 16 89758868 89758868 C T CDK10 Silent p.I143I 0.07 TCGA-MU-A8JM-01 17 10435193 10435193 G A MYH2 Silent p.F818F 0.24 TCGA-MU-A8JM-01 17 21322820 21322820 C T KCNJ12 3'UTR 0.26 TCGA-MU-A8JM-01 17 30552069 30552069 C G RHOT1 3'UTR 0.33 TCGA-MU-A8JM-01 17 37627724 37627724 C T CDK12 Nonsense_Mutation p.Q547* 0.31 TCGA-MU-A8JM-01 17 3785559 3785559 G A CAMKK1 Missense_Mutation p.A264V 0.35 tolerated_low_confidence(0.5) unknown(0) TCGA-MU-A8JM-01 17 42338957 42338957 G T SLC4A1 Missense_Mutation p.P52T 0.31 tolerated(0.18) benign(0.001) TCGA-MU-A8JM-01 17 65146021 65146021 G A HELZ Nonsense_Mutation p.Q813* 0.33 TCGA-MU-A8JM-01 17 7415644 7415644 C T POLR2A Silent p.P1491P 0.12 TCGA-MU-A8JM-01 17 7984484 7984484 G A ALOX12B Missense_Mutation p.S125L 0.25 tolerated(0.16) benign(0.014) TCGA-MU-A8JM-01 17 9816820 9816820 G C GAS7 3'Flank 0.33 TCGA-MU-A8JM-01 18 52894154 52894154 G A TCF4 3'Flank 0.09 TCGA-MU-A8JM-01 19 10468197 10468197 C T TYK2 Intron 0.38 TCGA-MU-A8JM-01 19 10468219 10468219 C T TYK2 Intron 0.33 TCGA-MU-A8JM-01 19 10468400 10468400 C T TYK2 Intron 0.31 TCGA-MU-A8JM-01 19 21991486 21991486 C T ZNF43 Silent p.E451E 0.26 TCGA-MU-A8JM-01 19 35512508 35512508 G A GRAMD1A Silent p.L526L 0.30 TCGA-MU-A8JM-01 19 37904533 37904533 G A ZNF569 Missense_Mutation p.L343F 0.36 tolerated(0.44) probably_damaging(0.999) TCGA-MU-A8JM-01 19 53302044 53302044 C G ZNF28 3'UTR 0.38 TCGA-MU-A8JM-01 19 548554 548554 G T GZMM Silent p.L75L 0.26 TCGA-MU-A8JM-01 19 55874593 55874593 C T FAM71E2 5'UTR 0.25 TCGA-MU-A8JM-01 19 6963667 6963667 C T EMR4P RNA 0.34 TCGA-MU-A8JM-01 19 7682676 7682676 C G CAMSAP3 Silent p.L1188L 0.29 TCGA-MU-A8JM-01 19 8808403 8808403 C T ACTL9 Missense_Mutation p.A217T 0.30 tolerated(0.08) probably_damaging(0.987) TCGA-MU-A8JM-01 19 9091021 9091021 A G MUC16 Missense_Mutation p.F265S 0.34 unknown(0) TCGA-MU-A8JM-01 1 115829015 115829015 C T NGF Silent p.S134S 0.48 TCGA-MU-A8JM-01 1 19481938 19481938 C T UBR4 Silent p.L2099L 0.34 TCGA-MU-A8JM-01 1 201974850 201974850 C G RNPEP 3'UTR 0.57 TCGA-MU-A8JM-01 1 22974243 22974243 C T C1QC Silent p.S235S 0.34 TCGA-MU-A8JM-01 1 45241263 45241263 C G RPS8 5'UTR 0.30 TCGA-MU-A8JM-01 1 52870239 52870239 G T PRPF38A 5'UTR 0.29 TCGA-MU-A8JM-01 1 52870388 52870388 G A PRPF38A 5'UTR 0.34 TCGA-MU-A8JM-01 1 63912479 63912479 C T ITGB3BP Silent p.%3D 0.29 TCGA-MU-A8JM-01 1 84874179 84874179 C A DNASE2B Missense_Mutation p.S121R 0.34 tolerated(0.21) benign(0.128) TCGA-MU-A8JM-01 1 89845942 89845942 C G GBP6 Intron 0.36 TCGA-MU-A8JM-01 20 20350538 20350538 G A INSM1 3'UTR 0.30 TCGA-MU-A8JM-01 20 30194242 30194242 G A ID1 3'UTR 0.27 TCGA-MU-A8JM-01 20 32681494 32681494 C T EIF2S2 Missense_Mutation p.E243K 0.24 deleterious(0) possibly_damaging(0.849) TCGA-MU-A8JM-01 20 44518898 44518898 C G NEURL2 Missense_Mutation p.E245Q 0.36 deleterious(0.03) possibly_damaging(0.826) TCGA-MU-A8JM-01 20 44519036 44519036 C A NEURL2 Missense_Mutation p.D199Y 0.41 deleterious(0.01) possibly_damaging(0.552) TCGA-MU-A8JM-01 20 44519932 44519932 C T CTSA 5'UTR 0.36 TCGA-MU-A8JM-01 20 58515316 58515316 G A PPP1R3D 5'UTR 0.37 TCGA-MU-A8JM-01 20 62200670 62200670 G A HELZ2 Missense_Mutation p.R307W 0.07 tolerated(0.08) benign(0.021) TCGA-MU-A8JM-01 21 32119279 32119279 G C KRTAP21-2 Missense_Mutation p.S81C 0.42 deleterious_low_confidence(0) unknown(0) TCGA-MU-A8JM-01 21 47410316 47410316 G A COL6A1 Missense_Mutation p.D328N 0.35 tolerated(0.11) unknown(0) TCGA-MU-A8JM-01 22 21990827 21990827 A G CCDC116 Missense_Mutation p.D437G 0.35 tolerated(0.13) benign(0.255) TCGA-MU-A8JM-01 22 32229936 32229936 G C DEPDC5 Missense_Mutation p.E714Q 0.19 tolerated(0.52) benign(0.002) TCGA-MU-A8JM-01 22 32230006 32230006 G C DEPDC5 Intron 0.26 TCGA-MU-A8JM-01 22 32230028 32230028 G A DEPDC5 Intron 0.29 TCGA-MU-A8JM-01 22 32230041 32230041 G A DEPDC5 Intron 0.24 TCGA-MU-A8JM-01 22 43088923 43088923 C A A4GALT Silent p.T345T 0.36 TCGA-MU-A8JM-01 22 50987547 50987547 C T KLHDC7B Silent p.L318L 0.32 TCGA-MU-A8JM-01 2 165424986 165424986 G A GRB14 Intron 0.31 TCGA-MU-A8JM-01 2 192141714 192141714 C T MYO1B Silent p.F31F 0.22 TCGA-MU-A8JM-01 2 219515182 219515182 C T ZNF142 Silent p.E116E 0.31 TCGA-MU-A8JM-01 2 26151012 26151012 T C KIF3C 3'UTR 0.23 TCGA-MU-A8JM-01 2 38301682 38301682 G A CYP1B1 Missense_Mutation p.R284W 0.24 deleterious(0.01) possibly_damaging(0.783) TCGA-MU-A8JM-01 2 54893058 54893058 G A SPTBN1 Nonsense_Mutation p.W2222* 0.08 TCGA-MU-A8JM-01 2 5836276 5836276 C T SOX11 3'UTR 0.29 TCGA-MU-A8JM-01 2 5837596 5837596 C T SOX11 3'UTR 0.30 TCGA-MU-A8JM-01 2 87042795 87042795 G T CD8B Missense_Mutation p.H223N 0.29 deleterious_low_confidence(0) benign(0.216) TCGA-MU-A8JM-01 3 100467175 100467175 C T TFG Nonsense_Mutation p.Q335* 0.12 TCGA-MU-A8JM-01 3 105086097 105086097 G T ALCAM 5'UTR 0.16 TCGA-MU-A8JM-01 3 119347643 119347643 G A PLA1A Missense_Mutation p.R406Q 0.11 tolerated(0.24) benign(0.016) TCGA-MU-A8JM-01 3 124160810 124160810 C T KALRN Missense_Mutation p.R1071W 0.11 deleterious(0) probably_damaging(0.954) TCGA-MU-A8JM-01 3 129130111 129130111 C A EFCAB12 Missense_Mutation p.D309Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-MU-A8JM-01 3 141497156 141497156 G A GRK7 Silent p.L10L 0.14 TCGA-MU-A8JM-01 3 141497544 141497544 G A GRK7 Missense_Mutation p.E140K 0.17 tolerated(0.46) benign(0.003) TCGA-MU-A8JM-01 3 141499333 141499333 G C GRK7 Missense_Mutation p.E244Q 0.13 tolerated(0.17) probably_damaging(1) TCGA-MU-A8JM-01 3 149042780 149042780 G A TM4SF18 Silent p.L99L 0.17 TCGA-MU-A8JM-01 3 187416720 187416720 G A RTP2 Nonsense_Mutation p.Q82* 0.20 TCGA-MU-A8JM-01 3 195609097 195609097 C T TNK2 Missense_Mutation p.E301K 0.12 tolerated(0.92) benign(0.032) TCGA-MU-A8JM-01 3 42679502 42679502 C T NKTR Missense_Mutation p.S769L 0.29 tolerated_low_confidence(0.41) probably_damaging(0.95) TCGA-MU-A8JM-01 3 44775954 44775954 G A ZNF501 Missense_Mutation p.R14K 0.26 tolerated(0.17) benign(0.001) TCGA-MU-A8JM-01 4 104065532 104065532 C G CENPE Missense_Mutation p.E1701Q 0.24 probably_damaging(0.933) TCGA-MU-A8JM-01 4 125585632 125585632 A G ANKRD50 3'UTR 0.38 TCGA-MU-A8JM-01 4 13604167 13604167 C T BOD1L1 Missense_Mutation p.E1453K 0.24 benign(0.006) TCGA-MU-A8JM-01 4 155253955 155253955 G A DCHS2 Silent p.I636I 0.38 TCGA-MU-A8JM-01 4 26425970 26425978 TTGCCTCAG AA RBPJ Frame_Shift_Del p.I181Kfs*23 0.22 TCGA-MU-A8JM-01 4 85731321 85731321 C A WDFY3 Silent p.V688V 0.25 TCGA-MU-A8JM-01 5 101709111 101709111 G T SLCO6A1 Missense_Mutation p.P702Q 0.33 tolerated(0.06) benign(0.265) TCGA-MU-A8JM-01 5 146778750 146778750 G A DPYSL3 Silent p.F506F 0.29 TCGA-MU-A8JM-01 5 153143998 153143998 C T GRIA1 Silent p.L620L 0.20 TCGA-MU-A8JM-01 5 154335966 154335966 C G MRPL22 Missense_Mutation p.S77R 0.23 deleterious(0) probably_damaging(1) TCGA-MU-A8JM-01 5 35954178 35954178 G A UGT3A1 3'UTR 0.32 TCGA-MU-A8JM-01 5 65118654 65118654 C T NLN Silent p.L676L 0.36 TCGA-MU-A8JM-01 6 109740447 109740447 C T PPIL6 Splice_Site p.X211_splice 0.26 TCGA-MU-A8JM-01 6 151766545 151766545 T C RMND1 Silent p.T134T 0.34 TCGA-MU-A8JM-01 6 160240014 160240014 C T PNLDC1 Missense_Mutation p.P421S 0.19 deleterious(0.01) possibly_damaging(0.849) TCGA-MU-A8JM-01 6 50813274 50813274 C T TFAP2B 3'UTR 0.21 TCGA-MU-A8JM-01 6 70639407 70639407 C T COL19A1 Nonsense_Mutation p.R161* 0.35 TCGA-MU-A8JM-01 6 97578748 97578748 G A KLHL32 Missense_Mutation p.R510Q 0.29 tolerated(0.24) possibly_damaging(0.796) TCGA-MU-A8JM-01 7 107315392 107315392 G A SLC26A4 Silent p.L201L 0.25 TCGA-MU-A8JM-01 7 107689889 107689889 G A LAMB4 Missense_Mutation p.S1335F 0.28 deleterious(0) benign(0.015) TCGA-MU-A8JM-01 7 135282843 135282843 C T NUP205 Missense_Mutation p.S721F 0.24 tolerated(0.07) benign(0.436) TCGA-MU-A8JM-01 7 149484543 149484543 G C SSPO RNA 0.43 TCGA-MU-A8JM-01 7 27237682 27237682 G A HOXA13 3'UTR 0.33 TCGA-MU-A8JM-01 7 30486644 30486644 C T NOD1 Missense_Mutation p.D770N 0.33 deleterious(0) benign(0.168) TCGA-MU-A8JM-01 7 30951504 30951504 C T AQP1 5'UTR 0.38 TCGA-MU-A8JM-01 7 34193776 34193776 C T BMPER 3'UTR 0.29 TCGA-MU-A8JM-01 7 82764592 82764592 C G PCLO Missense_Mutation p.K758N 0.34 unknown(0) TCGA-MU-A8JM-01 7 86539303 86539303 A G KIAA1324L Silent p.A728A 0.27 TCGA-MU-A8JM-01 7 94059900 94059900 C T COL1A2 3'UTR 0.27 TCGA-MU-A8JM-01 7 97920462 97920462 C T BRI3 Silent p.I95I 0.39 TCGA-MU-A8JM-01 7 99661928 99661928 C T ZSCAN21 Silent p.S370S 0.20 TCGA-MU-A8JM-01 8 124346126 124346126 C T ATAD2 Missense_Mutation p.S1157N 0.39 deleterious(0.04) benign(0.082) TCGA-MU-A8JM-01 8 133860732 133860732 G C PHF20L1 3'UTR 0.24 TCGA-MU-A8JM-01 8 141285841 141285841 G A TRAPPC9 Nonsense_Mutation p.Q830* 0.35 TCGA-MU-A8JM-01 8 30242658 30242658 A C RBPMS Missense_Mutation p.N17T 0.26 tolerated(0.32) benign(0.003) TCGA-MU-A8JM-01 8 3245125 3245125 G A CSMD1 Silent p.I891I 0.28 TCGA-MU-A8JM-01 8 33251771 33251771 G A FUT10 Intron 0.33 TCGA-MU-A8JM-01 8 56864670 56864670 C A LYN Nonsense_Mutation p.Y211* 0.30 TCGA-MU-A8JM-01 8 59515847 59515847 C T NSMAF Missense_Mutation p.A354T 0.08 deleterious(0) probably_damaging(0.976) TCGA-MU-A8JM-01 8 65527680 65527680 G A CYP7B1 Silent p.D320D 0.28 TCGA-MU-A8JM-01 8 6616279 6616279 A T AGPAT5 3'UTR 0.25 TCGA-MU-A8JM-01 8 85097221 85097221 C T RALYL 5'UTR 0.26 TCGA-MU-A8JM-01 8 96281425 96281425 C T C8orf37 5'UTR 0.29 TCGA-MU-A8JM-01 9 130513577 130513577 G A SH2D3C Silent p.F186F 0.20 TCGA-MU-A8JM-01 9 133779561 133779561 C T FIBCD1 Missense_Mutation p.G426S 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-MU-A8JM-01 9 139397678 139397678 G A NOTCH1 Missense_Mutation p.S1708L 0.32 tolerated(0.53) possibly_damaging(0.538) TCGA-MU-A8JM-01 X 120009440 120009440 C T CT47B1 Missense_Mutation p.G29R 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-MU-A8JM-01 X 131205189 131205189 G C MST4 Missense_Mutation p.K292N 0.30 deleterious(0.02) possibly_damaging(0.503) TCGA-MU-A8JM-01 X 135741679 135741679 G A CD40LG 3'UTR 0.13 TCGA-MU-A8JM-01 X 152686805 152686805 G A ZFP92 Missense_Mutation p.E324K 0.21 deleterious(0) possibly_damaging(0.644) TCGA-MU-A8JM-01 X 21875027 21875027 G T YY2 Missense_Mutation p.S142I 0.27 tolerated(0.16) benign(0.41) TCGA-MU-A8JM-01 X 30254621 30254621 C T MAGEB3 Missense_Mutation p.R194C 0.29 tolerated(0.06) benign(0.007) TCGA-MU-A8JM-01 X 37985895 37985895 G A SYTL5 Missense_Mutation p.R724H 0.23 tolerated(0.36) benign(0.006) TCGA-MU-A8JM-01 X 54224416 54224416 G T WNK3 3'UTR 0.24 TCGA-MU-A8JM-01 X 76761272 76761272 G A ATRX 3'UTR 0.37 TCGA-MY-A913-01 10 120454721 120454721 G C CACUL1 Nonsense_Mutation p.S273* 0.23 TCGA-MY-A913-01 10 13214430 13214430 T C MCM10 Missense_Mutation p.V135A 0.17 tolerated(0.74) benign(0.001) TCGA-MY-A913-01 10 135137749 135137749 G C CALY 3'Flank 0.44 TCGA-MY-A913-01 10 32740795 32740795 G C CCDC7 Missense_Mutation p.K75N 0.24 tolerated(0.17) possibly_damaging(0.52) TCGA-MY-A913-01 10 33143366 33143366 G C C10ORF68 Missense_Mutation p.E597Q 0.15 deleterious(0.02) benign(0.11) TCGA-MY-A913-01 10 73560417 73560417 C G CDH23 Missense_Mutation p.L223V 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-MY-A913-01 10 75187892 75187892 C G MSS51 Missense_Mutation p.D51H 0.23 deleterious(0) possibly_damaging(0.739) TCGA-MY-A913-01 10 75481158 75481158 G A RP11-574K11.28 RNA 0.24 TCGA-MY-A913-01 10 75757905 75757905 C T VCL 5'UTR 0.39 TCGA-MY-A913-01 10 79603450 79603450 G A DLG5 Silent p.N293N 0.52 TCGA-MY-A913-01 10 82276058 82276058 C A TSPAN14 Missense_Mutation p.F240L 0.42 tolerated(0.06) probably_damaging(0.998) TCGA-MY-A913-01 11 101868467 101868467 G A KIAA1377 3'UTR 0.06 TCGA-MY-A913-01 11 125647363 125647363 C T PATE2 Missense_Mutation p.D86N 0.67 tolerated(0.2) benign(0.232) TCGA-MY-A913-01 11 17167223 17167223 G C PIK3C2A Missense_Mutation p.Q566E 0.47 tolerated(0.77) benign(0.003) TCGA-MY-A913-01 11 36598180 36598180 G A RAG1 3'UTR 0.50 TCGA-MY-A913-01 11 46569946 46569946 C G AMBRA1 5'UTR 0.39 TCGA-MY-A913-01 11 49974523 49974523 C T OR4C13 Silent p.I183I 0.13 TCGA-MY-A913-01 11 57193651 57193651 G C SLC43A3 5'UTR 0.64 TCGA-MY-A913-01 11 59608625 59608625 G A GIF Silent p.L228L 0.49 TCGA-MY-A913-01 11 67395408 67395408 C G NUDT8 3'Flank 0.54 TCGA-MY-A913-01 11 77702181 77702181 G C INTS4 Silent p.V73V 0.25 TCGA-MY-A913-01 12 112708099 112708099 C T HECTD4 Missense_Mutation p.D559N 0.26 probably_damaging(0.994) TCGA-MY-A913-01 12 117728144 117728144 C T NOS1 Missense_Mutation p.E314K 0.38 tolerated(0.09) benign(0.005) TCGA-MY-A913-01 12 123024280 123024280 G C KNTC1 Missense_Mutation p.E142Q 0.32 tolerated(0.18) benign(0.047) TCGA-MY-A913-01 12 124821523 124821523 G C NCOR2 Missense_Mutation p.S1964C 0.44 benign(0.027) TCGA-MY-A913-01 12 132529874 132529874 G A EP400 Silent p.R2265R 0.22 TCGA-MY-A913-01 12 15749938 15749938 C T PTPRO 3'UTR 0.26 TCGA-MY-A913-01 12 53200941 53200941 G T KRT4 Missense_Mutation p.S492Y 0.29 tolerated_low_confidence(0.58) unknown(0) TCGA-MY-A913-01 12 54736035 54736035 G C COPZ1 Missense_Mutation p.E45Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-MY-A913-01 12 56511283 56511283 G A RPL41 Missense_Mutation p.R18K 0.30 unknown(0) TCGA-MY-A913-01 12 5744497 5744497 G T ANO2 Nonsense_Mutation p.S546* 0.27 TCGA-MY-A913-01 12 67688902 67688902 G A CAND1 Missense_Mutation p.E153K 0.35 deleterious(0) probably_damaging(0.997) TCGA-MY-A913-01 12 7469741 7469741 C G ACSM4 Missense_Mutation p.S210C 0.21 deleterious(0) probably_damaging(0.938) TCGA-MY-A913-01 12 78593221 78593221 G A NAV3 Missense_Mutation p.D2187N 0.29 deleterious(0) benign(0.27) TCGA-MY-A913-01 12 81283034 81283034 C T LIN7A Missense_Mutation p.R66Q 0.29 deleterious(0.01) benign(0.247) TCGA-MY-A913-01 12 82752178 82752178 C G CCDC59 5'UTR 0.33 TCGA-MY-A913-01 13 100992414 100992414 A C PCCA Missense_Mutation p.H515P 0.33 tolerated(0.36) benign(0.411) TCGA-MY-A913-01 13 101266661 101266661 C T TMTC4 Silent p.V620V 0.32 TCGA-MY-A913-01 13 25424529 25424529 C A RNF17 Nonsense_Mutation p.S1051* 0.65 TCGA-MY-A913-01 13 25425623 25425623 G T RNF17 Silent p.V1078V 0.56 TCGA-MY-A913-01 13 33338661 33338661 G A PDS5B Missense_Mutation p.E1185K 0.20 deleterious(0.01) benign(0.079) TCGA-MY-A913-01 13 76393592 76393592 G C LMO7 Missense_Mutation p.E477Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-MY-A913-01 14 65879723 65879723 C G FUT8 Intron 0.40 TCGA-MY-A913-01 14 73967389 73967389 G C HEATR4 Silent p.L717L 0.58 TCGA-MY-A913-01 14 76186982 76186982 C G TTLL5 Missense_Mutation p.I326M 0.50 tolerated(0.06) possibly_damaging(0.609) TCGA-MY-A913-01 14 90738640 90738640 G C PSMC1 Silent p.L404L 0.19 TCGA-MY-A913-01 15 22868961 22868961 G C TUBGCP5 Missense_Mutation p.E945Q 0.21 tolerated(0.11) benign(0.065) TCGA-MY-A913-01 15 34654440 34654440 C G LPCAT4 Missense_Mutation p.E323Q 0.26 deleterious(0) probably_damaging(0.972) TCGA-MY-A913-01 15 65956935 65956935 C T DENND4A Missense_Mutation p.E1828K 0.15 deleterious(0.01) benign(0.027) TCGA-MY-A913-01 15 75688620 75688620 G A SIN3A Missense_Mutation p.A691V 0.19 deleterious(0.02) benign(0.425) TCGA-MY-A913-01 15 81636335 81636335 G A TMC3 Silent p.L524L 0.42 TCGA-MY-A913-01 16 11038605 11038605 G A CLEC16A Missense_Mutation p.G11R 0.38 deleterious(0) probably_damaging(0.947) TCGA-MY-A913-01 16 18848585 18848585 G T SMG1 Missense_Mutation p.L2532M 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-MY-A913-01 16 2812813 2812813 C T SRRM2 Missense_Mutation p.L762F 0.21 unknown(0) TCGA-MY-A913-01 16 57496556 57496556 C A POLR2C 5'UTR 0.23 TCGA-MY-A913-01 16 68057402 68057402 G A DDX28 5'UTR 0.33 TCGA-MY-A913-01 16 68344642 68344642 G A SLC7A6OS Missense_Mutation p.S63F 0.38 deleterious(0) probably_damaging(0.986) TCGA-MY-A913-01 16 88947714 88947714 C T CBFA2T3 Missense_Mutation p.E463K 0.36 tolerated(0.06) benign(0.102) TCGA-MY-A913-01 16 89784444 89784444 C A VPS9D1 Intron 0.36 TCGA-MY-A913-01 17 16721438 16721438 G C AC022596.6 RNA 0.12 TCGA-MY-A913-01 17 1678376 1678376 C G SERPINF1 Missense_Mutation p.S223C 0.20 deleterious(0.05) possibly_damaging(0.554) TCGA-MY-A913-01 17 18566038 18566038 G C ZNF286B Missense_Mutation p.Q261E 0.23 tolerated(0.28) benign(0.001) TCGA-MY-A913-01 17 19282373 19282373 G A MAPK7 Missense_Mutation p.E54K 0.45 tolerated(0.38) benign(0) TCGA-MY-A913-01 17 2595364 2595364 C G CLUH Missense_Mutation p.E1157D 0.44 tolerated(0.13) possibly_damaging(0.602) TCGA-MY-A913-01 17 27953002 27953002 G A SSH2 3'UTR 0.32 TCGA-MY-A913-01 17 29258917 29258917 G A ADAP2 Missense_Mutation p.E110K 0.34 deleterious(0) possibly_damaging(0.64) TCGA-MY-A913-01 17 29665083 29665083 C G NF1 Missense_Mutation p.L2249V 0.32 deleterious(0.01) probably_damaging(0.952) TCGA-MY-A913-01 17 36959098 36959098 C G CWC25 Missense_Mutation p.E340Q 0.41 deleterious(0) possibly_damaging(0.886) TCGA-MY-A913-01 17 40010993 40010993 C T KLHL11 Missense_Mutation p.E376K 0.41 tolerated(0.06) possibly_damaging(0.719) TCGA-MY-A913-01 17 40925527 40925527 C G VPS25 Missense_Mutation p.R12G 0.30 tolerated(0.07) benign(0.014) TCGA-MY-A913-01 17 42156529 42156529 C T HDAC5 Missense_Mutation p.A1022T 0.23 deleterious(0.04) benign(0.232) TCGA-MY-A913-01 17 43898765 43898765 C T CRHR1 Missense_Mutation p.R96C 0.40 deleterious(0.01) possibly_damaging(0.892) TCGA-MY-A913-01 17 44771914 44771914 C T NSF Silent p.L420L 0.29 TCGA-MY-A913-01 17 46681304 46681304 C T HOXB6 Intron 0.42 TCGA-MY-A913-01 17 48916943 48916947 GAAGA AAAG WFIKKN2 Frame_Shift_Del p.K100Rfs*74 0.31 TCGA-MY-A913-01 17 73775175 73775175 C T H3F3B Silent p.R27R 0.32 TCGA-MY-A913-01 17 7750942 7750942 C T KDM6B Missense_Mutation p.R446W 0.19 unknown(0) TCGA-MY-A913-01 17 79825717 79825717 C G ARHGDIA 3'UTR 0.35 TCGA-MY-A913-01 17 80012828 80012828 G C GPS1 Missense_Mutation p.E262Q 0.32 deleterious(0.01) benign(0.183) TCGA-MY-A913-01 18 12126281 12126281 G C ANKRD62 Missense_Mutation p.E821Q 0.52 tolerated(0.06) benign(0.431) TCGA-MY-A913-01 18 19020294 19020294 C A GREB1L Silent p.L338L 0.35 TCGA-MY-A913-01 18 22807188 22807188 G A ZNF521 Nonsense_Mutation p.Q232* 0.39 TCGA-MY-A913-01 18 34324136 34324136 G A FHOD3 Missense_Mutation p.A1166T 0.09 deleterious(0.01) benign(0.316) TCGA-MY-A913-01 18 46956652 46956652 G C DYM Nonsense_Mutation p.S38* 0.38 TCGA-MY-A913-01 18 47803499 47803499 G A MBD1 Silent p.F62F 0.42 TCGA-MY-A913-01 19 1041857 1041857 C A ABCA7 Nonsense_Mutation p.S63* 0.62 TCGA-MY-A913-01 19 10745681 10745681 C G SLC44A2 Missense_Mutation p.I329M 0.16 deleterious(0.03) possibly_damaging(0.873) TCGA-MY-A913-01 19 11040207 11040207 G A C19orf52 Silent p.L204L 0.22 TCGA-MY-A913-01 19 11311112 11311112 C T DOCK6 Silent p.L1991L 0.14 TCGA-MY-A913-01 19 13010442 13010442 G C GCDH 3'UTR 0.07 TCGA-MY-A913-01 19 13035568 13035568 C T FARSA Silent p.E360E 0.15 TCGA-MY-A913-01 19 14163208 14163208 C T IL27RA 3'UTR 0.17 TCGA-MY-A913-01 19 16243289 16243289 C G RAB8A 3'UTR 0.29 TCGA-MY-A913-01 19 16243775 16243775 C A RAB8A 3'UTR 0.26 TCGA-MY-A913-01 19 19032529 19032529 G A DDX49 Silent p.L99L 0.27 TCGA-MY-A913-01 19 3633132 3633132 G C PIP5K1C 3'UTR 0.40 TCGA-MY-A913-01 19 37854340 37854340 C T HKR1 Missense_Mutation p.S548L 0.35 deleterious(0.03) probably_damaging(0.951) TCGA-MY-A913-01 19 38706805 38706805 G C DPF1 Missense_Mutation p.I318M 0.33 deleterious(0) possibly_damaging(0.847) TCGA-MY-A913-01 19 41186914 41186914 C G NUMBL Missense_Mutation p.D150H 0.33 deleterious(0) possibly_damaging(0.907) TCGA-MY-A913-01 19 41282940 41282940 G A MIA Missense_Mutation p.E110K 0.19 deleterious(0) possibly_damaging(0.878) TCGA-MY-A913-01 19 42473728 42473728 C A ATP1A3 Missense_Mutation p.M862I 0.21 tolerated(0.26) possibly_damaging(0.844) TCGA-MY-A913-01 19 43865477 43865477 C G CD177 3'UTR 0.26 TCGA-MY-A913-01 19 44891369 44891369 G A ZNF285 Silent p.C346C 0.10 TCGA-MY-A913-01 19 45575729 45575729 C G ZNF296 Missense_Mutation p.Q186H 0.20 deleterious(0) probably_damaging(0.996) TCGA-MY-A913-01 19 46095835 46095835 G C GPR4 5'UTR 0.21 TCGA-MY-A913-01 19 46269190 46269190 C G SIX5 Missense_Mutation p.E597Q 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-MY-A913-01 19 47425217 47425217 G A ARHGAP35 Silent p.V1095V 0.38 TCGA-MY-A913-01 19 50475138 50475138 C G VRK3 3'Flank 0.27 TCGA-MY-A913-01 19 51830056 51830056 G T IGLON5 Missense_Mutation p.D184Y 0.31 deleterious(0.01) possibly_damaging(0.579) TCGA-MY-A913-01 19 54721334 54721334 C T LILRB3 Missense_Mutation p.D536N 0.22 tolerated(0.15) benign(0.002) TCGA-MY-A913-01 19 58982444 58982444 G A ZNF324 Silent p.Q195Q 0.19 TCGA-MY-A913-01 19 9086479 9086479 G C MUC16 Nonsense_Mutation p.S1779* 0.14 TCGA-MY-A913-01 19 9087125 9087125 G C MUC16 Missense_Mutation p.P1564A 0.12 unknown(0) TCGA-MY-A913-01 19 9087580 9087580 G C MUC16 Nonsense_Mutation p.S1412* 0.24 TCGA-MY-A913-01 19 9087774 9087774 G C MUC16 Silent p.L1347L 0.15 TCGA-MY-A913-01 19 9087913 9087913 G A MUC16 Missense_Mutation p.S1301F 0.14 unknown(0) TCGA-MY-A913-01 19 9088345 9088345 G A MUC16 Missense_Mutation p.S1157F 0.17 unknown(0) TCGA-MY-A913-01 19 9088435 9088435 G C MUC16 Nonsense_Mutation p.S1127* 0.26 TCGA-MY-A913-01 19 9088537 9088537 G C MUC16 Nonsense_Mutation p.S1093* 0.13 TCGA-MY-A913-01 19 9088581 9088581 G C MUC16 Silent p.V1078V 0.10 TCGA-MY-A913-01 19 9089176 9089176 G A MUC16 Missense_Mutation p.S880F 0.14 unknown(0) TCGA-MY-A913-01 19 9089252 9089252 G A MUC16 Missense_Mutation p.P855S 0.14 unknown(0) TCGA-MY-A913-01 19 9089301 9089301 G A MUC16 Silent p.L838L 0.12 TCGA-MY-A913-01 19 9090042 9090042 G A MUC16 Silent p.I591I 0.20 TCGA-MY-A913-01 19 9091780 9091780 G A MUC16 Missense_Mutation p.S12F 0.10 unknown(0) TCGA-MY-A913-01 19 9091786 9091786 G A MUC16 Missense_Mutation p.S10L 0.09 unknown(0) TCGA-MY-A913-01 1 101490893 101490893 G C DPH5 Nonsense_Mutation p.S36* 0.15 TCGA-MY-A913-01 1 110087244 110087244 G C GPR61 3'UTR 0.36 TCGA-MY-A913-01 1 113162310 113162310 G C CAPZA1 5'UTR 0.28 TCGA-MY-A913-01 1 11907329 11907329 G A NPPA Silent p.L97L 0.29 TCGA-MY-A913-01 1 142621047 142621047 G A RP11-417J8.6 RNA 0.16 TCGA-MY-A913-01 1 149857726 149857726 G A HIST2H2BE 3'UTR 0.33 TCGA-MY-A913-01 1 152799948 152799948 G A LCE1A 5'Flank 0.20 TCGA-MY-A913-01 1 155182256 155182256 C T MTX1 Silent p.L284L 0.43 TCGA-MY-A913-01 1 155223698 155223698 C T FAM189B Silent p.L155L 0.41 TCGA-MY-A913-01 1 156308004 156308004 G C CCT3 5'UTR 0.26 TCGA-MY-A913-01 1 156933015 156933015 G C ARHGEF11 Missense_Mutation p.Q374E 0.29 deleterious(0) probably_damaging(0.994) TCGA-MY-A913-01 1 159842950 159842950 C G CCDC19 Missense_Mutation p.R454T 0.53 deleterious(0.01) probably_damaging(0.984) TCGA-MY-A913-01 1 179064386 179064386 C A TOR3A 3'UTR 0.27 TCGA-MY-A913-01 1 180235648 180235648 C T LHX4 Silent p.L124L 0.29 TCGA-MY-A913-01 1 202103400 202103400 G C ARL8A 3'UTR 0.29 TCGA-MY-A913-01 1 202777434 202777434 C T KDM5B 5'UTR 0.45 TCGA-MY-A913-01 1 206628291 206628291 G C SRGAP2 Missense_Mutation p.E724Q 0.16 tolerated(0.06) benign(0.273) TCGA-MY-A913-01 1 209878321 209878321 C A HSD11B1 Missense_Mutation p.L12M 0.42 deleterious(0.03) benign(0.15) TCGA-MY-A913-01 1 223991080 223991080 C T TP53BP2 Missense_Mutation p.E242K 0.11 deleterious(0) probably_damaging(0.993) TCGA-MY-A913-01 1 226595704 226595704 C T PARP1 5'UTR 0.25 TCGA-MY-A913-01 1 240072230 240072230 C T CHRM3 Silent p.L493L 0.20 TCGA-MY-A913-01 1 28920705 28920705 G C RAB42 3'UTR 0.50 TCGA-MY-A913-01 1 32950834 32950834 G T ZBTB8B Missense_Mutation p.D435Y 0.31 deleterious(0.02) benign(0.004) TCGA-MY-A913-01 1 33961034 33961034 C T ZSCAN20 Silent p.F1030F 0.35 TCGA-MY-A913-01 1 45288207 45288207 G C PTCH2 Missense_Mutation p.I1164M 0.45 tolerated_low_confidence(0.06) benign(0.008) TCGA-MY-A913-01 1 53122515 53122515 G A FAM159A Missense_Mutation p.E126K 0.33 tolerated(0.19) benign(0.168) TCGA-MY-A913-01 1 62672658 62672658 G A L1TD1 Missense_Mutation p.E120K 0.17 deleterious(0.03) unknown(0) TCGA-MY-A913-01 1 7886742 7886742 G C PER3 Missense_Mutation p.R712S 0.40 tolerated(0.21) possibly_damaging(0.587) TCGA-MY-A913-01 1 85016170 85016170 G C CTBS 3'UTR 0.29 TCGA-MY-A913-01 1 9011498 9011498 C T CA6 Intron 0.36 TCGA-MY-A913-01 1 97981453 97981453 G T DPYD Silent p.L523L 0.18 TCGA-MY-A913-01 20 43564118 43564118 G A PABPC1L Missense_Mutation p.A511T 0.37 tolerated(0.15) benign(0.008) TCGA-MY-A913-01 20 44576069 44576069 C T PCIF1 Silent p.I625I 0.39 TCGA-MY-A913-01 20 62562366 62562366 G C DNAJC5 Missense_Mutation p.D162H 0.29 deleterious(0.03) benign(0.103) TCGA-MY-A913-01 21 30407168 30407168 G C USP16 Missense_Mutation p.R84T 0.53 deleterious(0) probably_damaging(1) TCGA-MY-A913-01 22 22842376 22842376 G A ZNF280B Missense_Mutation p.H450Y 0.31 deleterious(0) probably_damaging(0.994) TCGA-MY-A913-01 22 29750853 29750853 C A AP1B1 Nonsense_Mutation p.E242* 0.36 TCGA-MY-A913-01 22 46685734 46685734 C G TTC38 Missense_Mutation p.F418L 0.38 deleterious(0.01) possibly_damaging(0.686) TCGA-MY-A913-01 22 47054146 47054146 C T GRAMD4 Missense_Mutation p.R116C 0.56 deleterious(0) possibly_damaging(0.762) TCGA-MY-A913-01 2 128367182 128367182 C G MYO7B Silent p.T972T 0.30 TCGA-MY-A913-01 2 131904417 131904417 C G PLEKHB2 3'UTR 0.11 TCGA-MY-A913-01 2 1320117 1320117 G T SNTG2 Missense_Mutation p.Q486H 0.35 deleterious(0.01) possibly_damaging(0.717) TCGA-MY-A913-01 2 162849882 162849882 C T DPP4 Missense_Mutation p.E738K 0.29 tolerated(1) benign(0.095) TCGA-MY-A913-01 2 166606318 166606318 C T GALNT3 Silent p.L571L 0.36 TCGA-MY-A913-01 2 169984179 169984179 C G LRP2 3'UTR 0.30 TCGA-MY-A913-01 2 170677767 170677767 C G METTL5 Missense_Mutation p.D81H 0.32 deleterious(0) probably_damaging(0.995) TCGA-MY-A913-01 2 179422195 179422195 C T TTN Missense_Mutation p.G29265E 0.32 TCGA-MY-A913-01 2 179596040 179596040 G A TTN Missense_Mutation p.S5818L 0.18 TCGA-MY-A913-01 2 179614310 179614310 G T TTN Intron 0.29 TCGA-MY-A913-01 2 191851784 191851784 C G STAT1 Missense_Mutation p.E370Q 0.35 tolerated(0.2) benign(0.089) TCGA-MY-A913-01 2 197297875 197297875 C G HECW2 Missense_Mutation p.W91C 0.31 deleterious(0) probably_damaging(0.997) TCGA-MY-A913-01 2 233632939 233632939 C A KCNJ13 Missense_Mutation p.D349Y 0.52 deleterious(0) probably_damaging(0.975) TCGA-MY-A913-01 2 27439775 27439775 C T ATRAID Silent p.L272L 0.24 TCGA-MY-A913-01 2 27657376 27657376 G C NRBP1 Silent p.L158L 0.37 TCGA-MY-A913-01 2 46414144 46414144 G A PRKCE 3'UTR 0.22 TCGA-MY-A913-01 2 5833085 5833085 G A SOX11 Missense_Mutation p.E78K 0.26 deleterious(0) probably_damaging(0.999) TCGA-MY-A913-01 2 61492561 61492561 C T USP34 Missense_Mutation p.E1917K 0.33 tolerated(0.12) benign(0.16) TCGA-MY-A913-01 2 71615770 71615770 C T ZNF638 Intron 0.29 TCGA-MY-A913-01 2 85051152 85051152 C T TRABD2A Missense_Mutation p.R371Q 0.23 tolerated(0.07) benign(0.002) TCGA-MY-A913-01 2 96781445 96781445 G T ADRA2B Silent p.L148L 0.38 TCGA-MY-A913-01 2 99410376 99410376 G A KIAA1211L 3'UTR 0.27 TCGA-MY-A913-01 3 112969424 112969424 C G BOC Silent p.V40V 0.46 TCGA-MY-A913-01 3 11623771 11623771 C T VGLL4 Intron 0.16 TCGA-MY-A913-01 3 121413784 121413784 C T GOLGB1 Silent p.Q1862Q 0.40 TCGA-MY-A913-01 3 121437343 121437343 C G GOLGB1 Missense_Mutation p.L259F 0.25 probably_damaging(0.996) TCGA-MY-A913-01 3 125635476 125635476 G A FAM86JP RNA 0.25 TCGA-MY-A913-01 3 138020469 138020469 C T NME9 Intron 0.49 TCGA-MY-A913-01 3 148749082 148749082 G A HLTF 3'UTR 0.13 TCGA-MY-A913-01 3 148749083 148749083 A T HLTF 3'UTR 0.14 TCGA-MY-A913-01 3 169803150 169803150 A T GPR160 3'UTR 0.33 TCGA-MY-A913-01 3 17131644 17131644 G C PLCL2 3'UTR 0.27 TCGA-MY-A913-01 3 172766857 172766857 C G SPATA16 Missense_Mutation p.E214Q 0.28 tolerated(0.15) possibly_damaging(0.607) TCGA-MY-A913-01 3 183638468 183638468 C A ABCC5 3'UTR 0.14 TCGA-MY-A913-01 3 190373864 190373864 G A IL1RAP Missense_Mutation p.G511D 0.41 tolerated(0.36) benign(0.06) TCGA-MY-A913-01 3 196199592 196199592 C G RNF168 Missense_Mutation p.E272Q 0.50 deleterious(0) benign(0.326) TCGA-MY-A913-01 3 27152574 27152574 C T NEK10 3'UTR 0.13 TCGA-MY-A913-01 3 33840292 33840292 C T PDCD6IP Silent p.F24F 0.48 TCGA-MY-A913-01 3 37323465 37323465 C G GOLGA4 Missense_Mutation p.S82C 0.29 probably_damaging(0.914) TCGA-MY-A913-01 3 38888718 38888718 C G SCN11A Missense_Mutation p.E1615Q 0.33 tolerated(0.12) possibly_damaging(0.588) TCGA-MY-A913-01 3 48693266 48693266 C G CELSR3 Missense_Mutation p.Q1548H 0.41 deleterious(0.04) benign(0.279) TCGA-MY-A913-01 3 50418214 50418214 C G CACNA2D2 Missense_Mutation p.K269N 0.47 tolerated(1) benign(0.002) TCGA-MY-A913-01 3 50418516 50418516 C G CACNA2D2 Missense_Mutation p.E232Q 0.42 deleterious(0.01) probably_damaging(0.94) TCGA-MY-A913-01 3 9877042 9877042 G A TTLL3 Missense_Mutation p.A873T 0.17 tolerated_low_confidence(0.44) benign(0.001) TCGA-MY-A913-01 4 39881359 39881359 C G PDS5A Missense_Mutation p.E661Q 0.50 tolerated(0.22) benign(0.062) TCGA-MY-A913-01 4 48496300 48496300 G A ZAR1 3'UTR 0.29 TCGA-MY-A913-01 4 87679451 87679451 G T PTPN13 Nonsense_Mutation p.E1088* 0.38 TCGA-MY-A913-01 4 87679459 87679459 G C PTPN13 Missense_Mutation p.E1090D 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-MY-A913-01 4 87680123 87680123 G A PTPN13 Silent p.V1150V 0.68 TCGA-MY-A913-01 5 130797726 130797726 G C RAPGEF6 Missense_Mutation p.Q846E 0.48 tolerated(0.3) probably_damaging(0.983) TCGA-MY-A913-01 5 133984695 133984695 C T SEC24A 5'UTR 0.42 TCGA-MY-A913-01 5 140563764 140563764 G A PCDHB16 Missense_Mutation p.E544K 0.37 deleterious_low_confidence(0.01) benign(0.228) TCGA-MY-A913-01 5 140563832 140563832 G C PCDHB16 Missense_Mutation p.Q566H 0.32 deleterious_low_confidence(0.05) benign(0.013) TCGA-MY-A913-01 5 150664188 150664188 C G SLC36A3 Missense_Mutation p.E306Q 0.20 deleterious(0) probably_damaging(0.996) TCGA-MY-A913-01 5 177302773 177302773 C T RP11-423H2.5 5'Flank 0.19 TCGA-MY-A913-01 6 106534327 106534327 G A PRDM1 5'UTR 0.47 TCGA-MY-A913-01 6 21598555 21598555 G A SOX4 3'UTR 0.37 TCGA-MY-A913-01 6 24533932 24533932 G A ALDH5A1 Missense_Mutation p.G547S 0.09 deleterious(0.03) benign(0.425) TCGA-MY-A913-01 6 24836047 24836047 C T FAM65B Missense_Mutation p.E719K 0.15 deleterious(0.01) possibly_damaging(0.492) TCGA-MY-A913-01 6 25798946 25798946 C G SLC17A1 Intron 0.09 TCGA-MY-A913-01 6 26234665 26234665 G T HIST1H1D Missense_Mutation p.A166D 0.54 tolerated(0.09) unknown(0) TCGA-MY-A913-01 6 27778265 27778265 C G HIST1H3H 3'UTR 0.25 TCGA-MY-A913-01 6 29589928 29589928 G A GABBR1 Missense_Mutation p.R340C 0.12 deleterious(0) probably_damaging(0.976) TCGA-MY-A913-01 6 30680755 30680755 G A MDC1 Nonsense_Mutation p.Q322* 0.22 TCGA-MY-A913-01 6 3154234 3154234 C T TUBB2A Missense_Mutation p.E401K 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-MY-A913-01 6 33169278 33169278 G C SLC39A7 Missense_Mutation p.E86Q 0.38 deleterious(0.05) unknown(0) TCGA-MY-A913-01 6 46129458 46129458 C G ENPP5 Missense_Mutation p.D347H 0.32 deleterious(0.01) benign(0.429) TCGA-MY-A913-01 6 56373444 56373444 G C DST Missense_Mutation p.F3751L 0.28 probably_damaging(0.946) TCGA-MY-A913-01 6 74405767 74405767 C G CD109 5'Flank 0.50 TCGA-MY-A913-01 6 74405820 74405820 C T CD109 5'Flank 0.46 TCGA-MY-A913-01 6 96053634 96053634 C T MANEA Missense_Mutation p.H248Y 0.27 deleterious(0.02) probably_damaging(0.982) TCGA-MY-A913-01 7 100682922 100682922 G C MUC17 Missense_Mutation p.R2742P 0.39 unknown(0) TCGA-MY-A913-01 7 102086984 102086984 G C ORAI2 Missense_Mutation p.E84Q 0.33 tolerated(0.1) benign(0.328) TCGA-MY-A913-01 7 122821096 122821096 C A SLC13A1 Missense_Mutation p.L53F 0.30 deleterious(0) probably_damaging(0.952) TCGA-MY-A913-01 7 132990635 132990635 C T EXOC4 Missense_Mutation p.S159L 0.24 deleterious(0.02) benign(0.055) TCGA-MY-A913-01 7 140285484 140285484 C T DENND2A Missense_Mutation p.E384K 0.29 deleterious(0) probably_damaging(0.987) TCGA-MY-A913-01 7 143747574 143747574 C G OR2A5 Missense_Mutation p.S27C 0.42 tolerated(0.07) benign(0) TCGA-MY-A913-01 7 154755408 154755408 C G PAXIP1 Missense_Mutation p.E654D 0.38 tolerated(0.15) unknown(0) TCGA-MY-A913-01 7 73653290 73653290 G C RFC2 Nonsense_Mutation p.S241* 0.20 TCGA-MY-A913-01 7 74212071 74212071 C T GTF2IRD2 Missense_Mutation p.E594K 0.13 deleterious(0.05) probably_damaging(0.994) TCGA-MY-A913-01 8 102680450 102680450 C T GRHL2 3'UTR 0.33 TCGA-MY-A913-01 8 103662550 103662550 C T KLF10 Missense_Mutation p.R418K 0.15 deleterious(0) probably_damaging(1) TCGA-MY-A913-01 8 10469174 10469174 G A RP1L1 Missense_Mutation p.R812W 0.30 benign(0.002) TCGA-MY-A913-01 8 10782211 10782211 C T XKR6 Silent p.E298E 0.46 TCGA-MY-A913-01 8 131922052 131922052 C T ADCY8 Silent p.S514S 0.29 TCGA-MY-A913-01 8 1650598 1650598 G C DLGAP2 3'UTR 0.44 TCGA-MY-A913-01 8 26270317 26270317 C T BNIP3L 3'UTR 0.50 TCGA-MY-A913-01 8 30242708 30242708 C T RBPMS Intron 0.21 TCGA-MY-A913-01 8 37698833 37698833 C T GPR124 Missense_Mutation p.L993F 0.48 tolerated(0.13) probably_damaging(0.944) TCGA-MY-A913-01 8 37717762 37717762 G A RAB11FIP1 3'UTR 0.31 TCGA-MY-A913-01 8 59764165 59764165 G C TOX Nonsense_Mutation p.S204* 0.52 TCGA-MY-A913-01 9 107531236 107531236 G C NIPSNAP3B Missense_Mutation p.D122H 0.47 deleterious(0.04) benign(0.114) TCGA-MY-A913-01 9 111670656 111670656 C T IKBKAP Silent p.V463V 0.21 TCGA-MY-A913-01 9 129453251 129453251 G A LMX1B Missense_Mutation p.E155K 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-MY-A913-01 9 13125377 13125377 G A MPDZ Silent p.L1549L 0.29 TCGA-MY-A913-01 9 136595278 136595278 C T SARDH Missense_Mutation p.R241H 0.43 tolerated(0.17) benign(0.013) TCGA-MY-A913-01 9 139815555 139815555 C T TRAF2 Silent p.V342V 0.26 TCGA-MY-A913-01 9 140250781 140250781 C G EXD3 Silent p.L232L 0.32 TCGA-MY-A913-01 9 140441327 140441327 C T PNPLA7 Silent p.R76R 0.43 TCGA-MY-A913-01 9 19521017 19521017 C G SLC24A2 Silent p.L537L 0.32 TCGA-MY-A913-01 9 34833018 34833018 C T FAM205B RNA 0.18 TCGA-MY-A913-01 9 74587667 74587667 G C C9orf85 Missense_Mutation p.R128T 0.17 deleterious(0.03) benign(0.018) TCGA-MY-A913-01 9 74587752 74587752 G A C9orf85 Missense_Mutation p.M156I 0.39 tolerated_low_confidence(0.33) benign(0) TCGA-MY-A913-01 9 8485824 8485824 G A PTPRD Missense_Mutation p.T998M 0.33 deleterious(0) probably_damaging(0.998) TCGA-MY-A913-01 X 105066784 105066784 C T NRK 5'UTR 0.39 TCGA-MY-A913-01 X 108886531 108886531 C T ACSL4 3'UTR 0.47 TCGA-MY-A913-01 X 20159750 20159750 C G EIF1AX Missense_Mutation p.K3N 0.27 deleterious(0) unknown(0) TCGA-MY-A913-01 X 69479026 69479026 C T P2RY4 Missense_Mutation p.R150H 0.19 tolerated(0.18) benign(0.077) TCGA-MY-A913-01 X 75005036 75005036 C G MAGEE2 5'UTR 0.54 TCGA-MY-A913-01 X 84258930 84258930 C T APOOL Silent p.I4I 0.44 TCGA-PN-A8MA-01 10 11963144 11963144 C G UPF2 3'UTR 0.23 TCGA-PN-A8MA-01 10 122280488 122280488 G A PPAPDC1A Missense_Mutation p.R109H 0.32 deleterious(0) probably_damaging(1) TCGA-PN-A8MA-01 10 38660039 38660039 C T HSD17B7P2 RNA 0.22 TCGA-PN-A8MA-01 10 61718699 61718699 C G C10orf40 5'UTR 0.25 TCGA-PN-A8MA-01 10 61789442 61789442 C - ANK3 3'UTR 0.20 TCGA-PN-A8MA-01 11 62010807 62010807 C T SCGB1D2 Silent p.F34F 0.45 TCGA-PN-A8MA-01 11 64067723 64067723 T G KCNK4 3'Flank 0.47 TCGA-PN-A8MA-01 11 7111173 7111173 G C RBMXL2 Silent p.L274L 0.22 TCGA-PN-A8MA-01 11 7111362 7111362 G A RBMXL2 Silent p.S337S 0.18 TCGA-PN-A8MA-01 11 88911270 88911270 C T TYR Missense_Mutation p.S50L 0.34 tolerated(0.08) probably_damaging(0.998) TCGA-PN-A8MA-01 12 130941163 130941163 C T RIMBP2 Missense_Mutation p.R62Q 0.47 deleterious(0.02) probably_damaging(0.957) TCGA-PN-A8MA-01 12 48526773 48526773 C T PFKM Silent p.G191G 0.10 TCGA-PN-A8MA-01 12 49726345 49726345 G A C1QL4 3'UTR 0.16 TCGA-PN-A8MA-01 13 109496740 109496740 G C MYO16 Missense_Mutation p.D361H 0.43 deleterious(0.01) probably_damaging(0.971) TCGA-PN-A8MA-01 13 114526467 114526467 G C GAS6 Missense_Mutation p.H512D 0.33 tolerated(0.25) benign(0.034) TCGA-PN-A8MA-01 13 114817570 114817570 G A RASA3 Silent p.F78F 0.35 TCGA-PN-A8MA-01 13 27645250 27645250 C G USP12 Missense_Mutation p.K323N 0.12 deleterious(0) probably_damaging(1) TCGA-PN-A8MA-01 13 37583567 37583567 C T SUPT20H 3'Flank 0.29 TCGA-PN-A8MA-01 13 50594680 50594680 C G KCNRG 3'UTR 0.14 TCGA-PN-A8MA-01 13 58209038 58209038 G A PCDH17 Silent p.V786V 0.28 TCGA-PN-A8MA-01 13 84454907 84454907 T A SLITRK1 Nonsense_Mutation p.R246* 0.25 TCGA-PN-A8MA-01 14 24647296 24647296 G A REC8 Splice_Site p.X288_splice 0.20 TCGA-PN-A8MA-01 14 31855776 31855776 C T HEATR5A Missense_Mutation p.V106I 0.14 tolerated(0.42) benign(0.008) TCGA-PN-A8MA-01 14 52508888 52508888 C G NID2 Missense_Mutation p.G587A 0.16 deleterious(0) probably_damaging(0.989) TCGA-PN-A8MA-01 14 88945486 88945486 G A PTPN21 Silent p.H763H 0.18 TCGA-PN-A8MA-01 15 33446714 33446714 C T FMN1 Silent p.Q134Q 0.23 TCGA-PN-A8MA-01 15 38991987 38991987 G A C15orf53 3'UTR 0.27 TCGA-PN-A8MA-01 15 39910349 39910349 C G FSIP1 Missense_Mutation p.R429T 0.40 tolerated(0.14) benign(0.067) TCGA-PN-A8MA-01 15 42840959 42840959 T C LRRC57 5'UTR 0.67 TCGA-PN-A8MA-01 15 83013509 83013509 C A GOLGA6L19 Missense_Mutation p.E358D 0.39 deleterious(0.01) unknown(0) TCGA-PN-A8MA-01 16 18870900 18870900 G A SMG1 Nonsense_Mutation p.Q1311* 0.13 TCGA-PN-A8MA-01 16 21272632 21272632 C T CRYM Missense_Mutation p.V275M 0.28 tolerated(0.05) probably_damaging(0.988) TCGA-PN-A8MA-01 16 2129555 2129555 C G TSC2 Intron 0.29 TCGA-PN-A8MA-01 16 22261985 22261985 G A EEF2K Missense_Mutation p.R140Q 0.13 tolerated(0.09) benign(0.033) TCGA-PN-A8MA-01 16 23546657 23546657 C G EARS2 Missense_Mutation p.M170I 0.20 deleterious(0.02) benign(0.01) TCGA-PN-A8MA-01 16 25251601 25251601 C A ZKSCAN2 Missense_Mutation p.D814Y 0.16 deleterious(0) probably_damaging(1) TCGA-PN-A8MA-01 16 28893867 28893867 C G ATP2A1 Missense_Mutation p.I140M 0.16 deleterious(0) possibly_damaging(0.672) TCGA-PN-A8MA-01 16 28935797 28935797 C T RABEP2 Silent p.T67T 0.26 TCGA-PN-A8MA-01 16 30616129 30616129 G A ZNF689 Missense_Mutation p.P320L 0.11 tolerated(0.25) possibly_damaging(0.627) TCGA-PN-A8MA-01 16 49671814 49671814 G A ZNF423 Missense_Mutation p.R417W 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-PN-A8MA-01 16 50342670 50342670 C T ADCY7 Silent p.I676I 0.22 TCGA-PN-A8MA-01 16 58437227 58437227 C G GINS3 Missense_Mutation p.L177V 0.20 deleterious(0.04) probably_damaging(0.913) TCGA-PN-A8MA-01 16 66755287 66755290 ATAA - DYNC1LI2 3'UTR 0.10 TCGA-PN-A8MA-01 16 68331334 68331334 G A SLC7A6 3'UTR 0.16 TCGA-PN-A8MA-01 16 71196603 71196603 C G HYDIN Missense_Mutation p.E183Q 0.32 possibly_damaging(0.897) TCGA-PN-A8MA-01 16 79633491 79633491 G A MAF Silent p.P103P 0.13 TCGA-PN-A8MA-01 16 81062288 81062290 CTT - CENPN Intron 0.10 TCGA-PN-A8MA-01 16 84690594 84690594 C T KLHL36 Missense_Mutation p.R61C 0.14 deleterious(0.04) benign(0.411) TCGA-PN-A8MA-01 16 90127862 90127862 C T PRDM7 Missense_Mutation p.M316I 0.14 deleterious(0.01) benign(0.192) TCGA-PN-A8MA-01 17 10419272 10419272 G C MYH1 Missense_Mutation p.S159C 0.22 deleterious(0) probably_damaging(0.988) TCGA-PN-A8MA-01 17 26522377 26522377 G A NLK 3'UTR 0.36 TCGA-PN-A8MA-01 17 28599885 28599885 G C BLMH Missense_Mutation p.H278Q 0.37 deleterious(0.01) benign(0.077) TCGA-PN-A8MA-01 17 39137147 39137147 G A KRT40 Nonsense_Mutation p.Q289* 0.36 TCGA-PN-A8MA-01 17 40028334 40028334 C T ACLY Missense_Mutation p.R915Q 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-PN-A8MA-01 17 40832012 40832012 G A CCR10 Silent p.F216F 0.25 TCGA-PN-A8MA-01 17 48701355 48701355 G C CACNA1G Missense_Mutation p.D2050H 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-PN-A8MA-01 17 59480487 59480487 G A TBX2 Silent p.L243L 0.41 TCGA-PN-A8MA-01 17 6526348 6526348 G A KIAA0753 Nonsense_Mutation p.Q320* 0.22 TCGA-PN-A8MA-01 17 7475178 7475178 T A SENP3 3'UTR 0.42 TCGA-PN-A8MA-01 17 76506489 76506489 C T DNAH17 Missense_Mutation p.V1401M 0.42 benign(0.268) TCGA-PN-A8MA-01 17 78444828 78444828 G C NPTX1 Missense_Mutation p.L362V 0.26 tolerated(0.46) possibly_damaging(0.725) TCGA-PN-A8MA-01 17 79202696 79202696 G A ENTHD2 3'UTR 0.30 TCGA-PN-A8MA-01 17 8062551 8062551 G A VAMP2 3'UTR 0.66 TCGA-PN-A8MA-01 18 14534945 14534945 A - POTEC Frame_Shift_Del p.L291* 0.10 TCGA-PN-A8MA-01 18 34191917 34191917 G A FHOD3 Silent p.T272T 0.27 TCGA-PN-A8MA-01 18 3457479 3457479 G A TGIF1 Silent p.T249T 0.17 TCGA-PN-A8MA-01 18 43310235 43310235 G A SLC14A1 Intron 0.17 TCGA-PN-A8MA-01 18 61449742 61449742 G A SERPINB7 Missense_Mutation p.A46T 0.19 deleterious(0.04) possibly_damaging(0.527) TCGA-PN-A8MA-01 18 61564366 61564366 C T SERPINB2 Silent p.L110L 0.18 TCGA-PN-A8MA-01 18 67816264 67816264 C T RTTN Missense_Mutation p.D728N 0.31 tolerated(0.08) probably_damaging(0.983) TCGA-PN-A8MA-01 18 6961610 6961610 C T LAMA1 Missense_Mutation p.R2534Q 0.21 tolerated(0.28) benign(0.034) TCGA-PN-A8MA-01 18 74583658 74583658 G T ZNF236 Missense_Mutation p.V180L 0.14 tolerated(0.24) benign(0.022) TCGA-PN-A8MA-01 18 74692253 74692253 C A RP11-862L9.3 5'Flank 0.20 TCGA-PN-A8MA-01 19 3053904 3053904 C A AES Silent p.L236L 0.31 TCGA-PN-A8MA-01 19 35434616 35434616 G A ZNF30 Missense_Mutation p.R250Q 0.19 tolerated(0.69) benign(0.002) TCGA-PN-A8MA-01 19 35719534 35719534 C T FAM187B Missense_Mutation p.G17E 0.10 tolerated(0.21) possibly_damaging(0.536) TCGA-PN-A8MA-01 19 39219705 39219705 G A ACTN4 Missense_Mutation p.A830T 0.10 tolerated(0.07) probably_damaging(0.987) TCGA-PN-A8MA-01 19 39219706 39219706 C T ACTN4 Missense_Mutation p.A830V 0.09 tolerated(0.08) probably_damaging(0.975) TCGA-PN-A8MA-01 19 39589766 39589766 C T PAPL Silent p.D163D 0.08 TCGA-PN-A8MA-01 19 40901783 40901783 C T PRX Missense_Mutation p.E826K 0.13 tolerated(0.1) possibly_damaging(0.486) TCGA-PN-A8MA-01 19 43268402 43268402 C T PSG8 Silent p.T32T 0.10 TCGA-PN-A8MA-01 19 47260144 47260144 G C FKRP Missense_Mutation p.E479D 0.18 deleterious(0) probably_damaging(0.978) TCGA-PN-A8MA-01 19 47261177 47261177 G T FKRP 3'UTR 0.16 TCGA-PN-A8MA-01 19 49147719 49147719 G C CA11 Missense_Mutation p.L84V 0.72 deleterious(0) probably_damaging(0.987) TCGA-PN-A8MA-01 19 50251405 50251405 G A TSKS Silent p.S172S 0.18 TCGA-PN-A8MA-01 19 50295284 50295284 C T AP2A1 Missense_Mutation p.T189M 0.08 deleterious(0) possibly_damaging(0.822) TCGA-PN-A8MA-01 19 51321515 51321515 G T KLK1 3'Flank 0.17 TCGA-PN-A8MA-01 19 52129355 52129355 C T SIGLEC5 Missense_Mutation p.R465H 0.21 tolerated(0.53) benign(0.052) TCGA-PN-A8MA-01 19 52954529 52954530 TT - ZNF578 5'Flank 0.11 TCGA-PN-A8MA-01 19 53304638 53304638 A C ZNF28 Missense_Mutation p.F154V 0.08 deleterious(0.03) benign(0.272) TCGA-PN-A8MA-01 19 53993881 53993881 G A ZNF813 Missense_Mutation p.G132E 0.07 tolerated(0.17) benign(0.417) TCGA-PN-A8MA-01 19 56466176 56466176 C T NLRP8 Missense_Mutation p.T251M 0.10 tolerated(0.11) benign(0.025) TCGA-PN-A8MA-01 19 57065176 57065176 C T ZFP28 Missense_Mutation p.S341F 0.13 tolerated(0.23) benign(0.231) TCGA-PN-A8MA-01 19 57175581 57175581 G C ZNF835 Missense_Mutation p.T329R 0.11 deleterious(0) probably_damaging(1) TCGA-PN-A8MA-01 19 58004241 58004241 G A ZNF419 Missense_Mutation p.E107K 0.67 tolerated(0.08) possibly_damaging(0.67) TCGA-PN-A8MA-01 19 6361478 6361478 C T CLPP 5'UTR 0.30 TCGA-PN-A8MA-01 1 10699190 10699190 C T CASZ1 Missense_Mutation p.D1697N 0.21 tolerated_low_confidence(0.25) unknown(0) TCGA-PN-A8MA-01 1 110174438 110174438 C T AMPD2 3'UTR 0.45 TCGA-PN-A8MA-01 1 115282378 115282378 C T CSDE1 Missense_Mutation p.R91H 0.05 deleterious(0) possibly_damaging(0.637) TCGA-PN-A8MA-01 1 11906031 11906031 G C NPPA 3'UTR 0.12 TCGA-PN-A8MA-01 1 151670372 151670372 C T SNX27 3'UTR 0.42 TCGA-PN-A8MA-01 1 152277158 152277158 G A FLG Missense_Mutation p.R3402W 0.33 unknown(0) TCGA-PN-A8MA-01 1 155263373 155263373 C A PKLR Missense_Mutation p.E375D 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-PN-A8MA-01 1 157548280 157548280 C A FCRL4 Silent p.L471L 0.29 TCGA-PN-A8MA-01 1 160062260 160062260 C G IGSF8 Missense_Mutation p.G513A 0.44 tolerated(0.51) probably_damaging(0.979) TCGA-PN-A8MA-01 1 160851860 160851860 C T ITLN1 Missense_Mutation p.D98N 0.35 deleterious(0.03) possibly_damaging(0.534) TCGA-PN-A8MA-01 1 161171950 161171950 G C NDUFS2 5'UTR 0.27 TCGA-PN-A8MA-01 1 17316400 17316400 G A ATP13A2 Silent p.F837F 0.16 TCGA-PN-A8MA-01 1 178442222 178442222 G A RASAL2 Missense_Mutation p.V1231M 0.26 tolerated(0.16) benign(0.033) TCGA-PN-A8MA-01 1 190195413 190195413 G T BRINP3 Missense_Mutation p.R254S 0.35 tolerated(0.25) benign(0.002) TCGA-PN-A8MA-01 1 20107131 20107131 C T TMCO4 Missense_Mutation p.A41T 0.10 tolerated(0.08) benign(0.016) TCGA-PN-A8MA-01 1 208200344 208200344 C T PLXNA2 3'UTR 0.42 TCGA-PN-A8MA-01 1 2114233 2114233 C T PRKCZ Intron 0.32 TCGA-PN-A8MA-01 1 2116434 2116434 G A PRKCZ Missense_Mutation p.E589K 0.47 deleterious(0) probably_damaging(0.97) TCGA-PN-A8MA-01 1 216896791 216896791 G T ESRRG 5'UTR 0.42 TCGA-PN-A8MA-01 1 232945151 232945151 A G MAP10 3'UTR 0.06 TCGA-PN-A8MA-01 1 237015896 237015896 C T MTR Nonsense_Mutation p.R591* 0.17 TCGA-PN-A8MA-01 1 23847547 23847547 C T E2F2 Missense_Mutation p.E199K 0.16 deleterious(0.03) benign(0.188) TCGA-PN-A8MA-01 1 245866386 245866386 G C KIF26B 3'UTR 0.14 TCGA-PN-A8MA-01 1 43664279 43664279 C T WDR65 Missense_Mutation p.R464C 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-PN-A8MA-01 1 43908278 43908278 C T SZT2 Nonsense_Mutation p.R2657* 0.27 TCGA-PN-A8MA-01 1 60309154 60309154 G A HOOK1 Missense_Mutation p.M224I 0.27 tolerated(0.57) benign(0.001) TCGA-PN-A8MA-01 1 67243672 67243672 C T TCTEX1D1 3'UTR 0.67 TCGA-PN-A8MA-01 1 78097617 78097617 G C ZZZ3 Missense_Mutation p.Q475E 0.11 tolerated(1) benign(0.011) TCGA-PN-A8MA-01 1 94948451 94948451 G A ABCD3 Intron 0.18 TCGA-PN-A8MA-01 20 17602102 17602102 C T RRBP1 Splice_Site p.X705_splice 0.31 TCGA-PN-A8MA-01 20 18143446 18143446 G A CSRP2BP Missense_Mutation p.D510N 0.10 tolerated(0.15) benign(0.049) TCGA-PN-A8MA-01 20 34291657 34291657 C G RBM39 3'UTR 0.12 TCGA-PN-A8MA-01 20 34292357 34292357 C T RBM39 3'UTR 0.12 TCGA-PN-A8MA-01 20 44579004 44579004 C T ZNF335 Missense_Mutation p.R1114H 0.06 deleterious(0.02) probably_damaging(0.982) TCGA-PN-A8MA-01 21 34443363 34443363 A C OLIG1 Missense_Mutation p.K271Q 0.45 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-PN-A8MA-01 21 45878007 45878007 C T LRRC3 3'UTR 0.33 TCGA-PN-A8MA-01 21 47738107 47738107 G C C21orf58 Missense_Mutation p.P43R 0.22 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-PN-A8MA-01 22 21140409 21140409 C T SERPIND1 Silent p.I427I 0.15 TCGA-PN-A8MA-01 22 21141411 21141411 C A SERPIND1 3'UTR 0.19 TCGA-PN-A8MA-01 22 21977100 21977100 C T UBE2L3 3'Flank 0.24 TCGA-PN-A8MA-01 22 29091838 29091838 C G CHEK2 Missense_Mutation p.K416N 0.10 deleterious(0) probably_damaging(0.993) TCGA-PN-A8MA-01 22 31837984 31837984 C T EIF4ENIF1 Missense_Mutation p.R776H 0.11 deleterious(0.03) benign(0.01) TCGA-PN-A8MA-01 22 35948748 35948748 C T RASD2 3'UTR 0.44 TCGA-PN-A8MA-01 22 37870682 37870682 G A MFNG Silent p.I227I 0.14 TCGA-PN-A8MA-01 22 38962709 38962709 T A DMC1 Silent p.V43V 0.22 TCGA-PN-A8MA-01 22 49146377 49146377 G A FAM19A5 3'UTR 0.22 TCGA-PN-A8MA-01 2 136528202 136528202 G C UBXN4 Missense_Mutation p.R240T 0.15 deleterious(0.04) possibly_damaging(0.461) TCGA-PN-A8MA-01 2 138434346 138434346 T G THSD7B 3'UTR 0.56 TCGA-PN-A8MA-01 2 172647985 172647985 G A SLC25A12 Missense_Mutation p.L521F 0.29 deleterious(0) probably_damaging(0.978) TCGA-PN-A8MA-01 2 182543516 182543516 G A NEUROD1 Silent p.D24D 0.12 TCGA-PN-A8MA-01 2 217559162 217559162 C G IGFBP5 Missense_Mutation p.E113Q 0.23 tolerated(0.4) benign(0.136) TCGA-PN-A8MA-01 2 220480888 220480888 C T STK11IP Silent p.I1091I 0.27 TCGA-PN-A8MA-01 2 242758389 242758389 G A NEU4 3'UTR 0.28 TCGA-PN-A8MA-01 2 39033786 39033786 C G DHX57 Missense_Mutation p.R1244T 0.47 tolerated(0.07) benign(0.069) TCGA-PN-A8MA-01 2 47132550 47132550 C A MCFD2 3'UTR 0.24 TCGA-PN-A8MA-01 2 69691281 69691281 C T AAK1 3'Flank 0.21 TCGA-PN-A8MA-01 2 69691822 69691822 C T AAK1 3'Flank 0.19 TCGA-PN-A8MA-01 2 69693210 69693210 C G AAK1 3'Flank 0.11 TCGA-PN-A8MA-01 2 73680307 73680307 C G ALMS1 Nonsense_Mutation p.S2217* 0.52 TCGA-PN-A8MA-01 2 73680328 73680328 C T ALMS1 Missense_Mutation p.S2224F 0.52 probably_damaging(1) TCGA-PN-A8MA-01 3 11058843 11058843 C T SLC6A1 5'UTR 0.65 TCGA-PN-A8MA-01 3 140281676 140281676 G C CLSTN2 Missense_Mutation p.E746Q 0.20 tolerated(0.14) benign(0.145) TCGA-PN-A8MA-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.48 deleterious(0.04) probably_damaging(0.96) TCGA-PN-A8MA-01 3 192516928 192516928 G A MB21D2 Silent p.F241F 0.48 TCGA-PN-A8MA-01 3 3098830 3098830 A T CNTN4 3'UTR 0.33 TCGA-PN-A8MA-01 3 38307435 38307435 C T SLC22A13 Silent p.L28L 0.16 TCGA-PN-A8MA-01 3 48697567 48697567 G A CELSR3 Missense_Mutation p.S834F 0.25 deleterious(0) probably_damaging(1) TCGA-PN-A8MA-01 3 49720707 49720707 G C APEH Missense_Mutation p.E711Q 0.40 tolerated(0.2) possibly_damaging(0.77) TCGA-PN-A8MA-01 3 50226155 50226155 C T SEMA3F 3'UTR 0.21 TCGA-PN-A8MA-01 3 78676637 78676637 G A ROBO1 Nonsense_Mutation p.R1237* 0.70 TCGA-PN-A8MA-01 3 89499497 89499497 G T EPHA3 Missense_Mutation p.K889N 0.49 deleterious(0.02) probably_damaging(0.989) TCGA-PN-A8MA-01 4 103556198 103556198 C T MANBA Missense_Mutation p.R721K 0.46 tolerated(0.75) benign(0.002) TCGA-PN-A8MA-01 4 147561722 147561722 G A POU4F2 Missense_Mutation p.R331H 0.38 deleterious(0) benign(0.41) TCGA-PN-A8MA-01 4 38828607 38828607 G A TLR6 3'UTR 0.29 TCGA-PN-A8MA-01 4 38829322 38829322 G A TLR6 Silent p.I591I 0.31 TCGA-PN-A8MA-01 4 48096147 48096147 T A TXK Missense_Mutation p.H219L 0.54 deleterious(0.02) benign(0.345) TCGA-PN-A8MA-01 4 89034649 89034649 C T ABCG2 Missense_Mutation p.E334K 0.42 tolerated(0.11) benign(0.01) TCGA-PN-A8MA-01 4 89408247 89408247 G A HERC5 Missense_Mutation p.V627I 0.29 tolerated(0.23) probably_damaging(0.988) TCGA-PN-A8MA-01 5 111576502 111576502 G A EPB41L4A Silent p.N267N 0.23 TCGA-PN-A8MA-01 5 121786556 121786556 C G SNCAIP Missense_Mutation p.Q672E 0.16 deleterious(0) probably_damaging(0.983) TCGA-PN-A8MA-01 5 1264674 1264674 G A TERT Silent p.C896C 0.08 TCGA-PN-A8MA-01 5 134116827 134116827 C G DDX46 Missense_Mutation p.S257C 0.37 deleterious(0.01) benign(0.326) TCGA-PN-A8MA-01 5 137727665 137727665 G A KDM3B Missense_Mutation p.D782N 0.44 tolerated_low_confidence(0.39) benign(0.014) TCGA-PN-A8MA-01 5 137780128 137780128 G A REEP2 Silent p.K69K 0.17 TCGA-PN-A8MA-01 5 140209185 140209185 G A PCDHA6 Silent p.A503A 0.24 TCGA-PN-A8MA-01 5 14482734 14482734 T G TRIO Missense_Mutation p.F2170C 0.10 benign(0.372) TCGA-PN-A8MA-01 5 154330464 154330464 C T MRPL22 Missense_Mutation p.P54L 0.44 deleterious(0) probably_damaging(0.963) TCGA-PN-A8MA-01 5 160720845 160720845 C A GABRB2 3'UTR 0.36 TCGA-PN-A8MA-01 5 167919702 167919702 G A RARS Missense_Mutation p.M73I 0.39 tolerated(0.21) benign(0.118) TCGA-PN-A8MA-01 5 37227069 37227069 C G C5orf42 Missense_Mutation p.R543T 0.18 deleterious(0.01) possibly_damaging(0.809) TCGA-PN-A8MA-01 5 37305275 37305275 C T NUP155 Missense_Mutation p.E981K 0.10 tolerated(0.17) benign(0.173) TCGA-PN-A8MA-01 5 72188976 72188976 C T TNPO1 Missense_Mutation p.S600L 0.09 deleterious(0) possibly_damaging(0.736) TCGA-PN-A8MA-01 5 96518931 96518931 G A CTD-2215E18.1 Silent p.T84T 0.26 TCGA-PN-A8MA-01 6 105526441 105526441 G C LIN28B Missense_Mutation p.R179T 0.39 deleterious(0.01) benign(0.446) TCGA-PN-A8MA-01 6 152570391 152570391 G A SYNE1 Silent p.L6493L 0.47 TCGA-PN-A8MA-01 6 27114523 27114523 C T HIST1H2BK Missense_Mutation p.V19M 0.06 deleterious_low_confidence(0.03) unknown(0) TCGA-PN-A8MA-01 6 29556438 29556438 C T OR2H2 Silent p.C239C 0.68 TCGA-PN-A8MA-01 6 33154227 33154227 C T COL11A2 Intron 0.65 TCGA-PN-A8MA-01 6 56418196 56418196 C G DST Missense_Mutation p.E2509Q 0.46 possibly_damaging(0.877) TCGA-PN-A8MA-01 6 90420447 90420447 G A MDN1 Missense_Mutation p.S2573L 0.38 benign(0.147) TCGA-PN-A8MA-01 7 101847765 101847765 G A CUX1 Missense_Mutation p.R1012Q 0.21 deleterious(0) unknown(0) TCGA-PN-A8MA-01 7 107417142 107417142 G A SLC26A3 Silent p.C508C 0.21 TCGA-PN-A8MA-01 7 148712129 148712129 C G PDIA4 Missense_Mutation p.V161L 0.31 deleterious(0.03) possibly_damaging(0.497) TCGA-PN-A8MA-01 7 19035888 19035888 C T HDAC9 3'Flank 0.23 TCGA-PN-A8MA-01 7 37890234 37890234 T C NME8 Missense_Mutation p.I32T 0.19 deleterious(0) probably_damaging(0.997) TCGA-PN-A8MA-01 7 43546798 43546798 C T HECW1 Missense_Mutation p.R1232C 0.13 deleterious(0) probably_damaging(0.995) TCGA-PN-A8MA-01 7 44530230 44530230 A T NUDCD3 5'UTR 0.48 TCGA-PN-A8MA-01 7 47315039 47315039 G A TNS3 3'UTR 0.18 TCGA-PN-A8MA-01 7 65439533 65439533 G A GUSB Silent p.P408P 0.31 TCGA-PN-A8MA-01 7 73530284 73530284 C G LIMK1 Missense_Mutation p.I521M 0.17 tolerated(0.71) probably_damaging(1) TCGA-PN-A8MA-01 7 94293343 94293343 G A PEG10 Missense_Mutation p.E159K 0.28 deleterious(0.03) probably_damaging(0.975) TCGA-PN-A8MA-01 7 97991669 97991669 C T BAIAP2L1 Missense_Mutation p.A43T 0.19 deleterious(0.04) probably_damaging(0.958) TCGA-PN-A8MA-01 8 131064660 131064661 - T ASAP1 3'UTR 0.17 TCGA-PN-A8MA-01 8 22262348 22262348 C T SLC39A14 Missense_Mutation p.S42F 0.43 deleterious(0.01) benign(0.008) TCGA-PN-A8MA-01 8 29046108 29046108 G A KIF13B Silent p.F80F 0.38 TCGA-PN-A8MA-01 8 38879173 38879173 G C ADAM9 Missense_Mutation p.M228I 0.50 tolerated(0.18) benign(0.439) TCGA-PN-A8MA-01 8 56723458 56723458 A G TGS1 Missense_Mutation p.D721G 0.39 deleterious(0) probably_damaging(1) TCGA-PN-A8MA-01 8 73480405 73480405 G C KCNB2 Missense_Mutation p.E146Q 0.41 deleterious(0) probably_damaging(0.993) TCGA-PN-A8MA-01 8 73480471 73480471 G C KCNB2 Missense_Mutation p.D168H 0.30 deleterious(0.01) probably_damaging(0.912) TCGA-PN-A8MA-01 8 73480521 73480521 G A KCNB2 Silent p.E184E 0.30 TCGA-PN-A8MA-01 8 75147549 75147549 C T JPH1 3'UTR 0.21 TCGA-PN-A8MA-01 8 97296369 97296369 C T PTDSS1 Nonsense_Mutation p.R102* 0.22 TCGA-PN-A8MA-01 9 130580407 130580407 G C ENG Missense_Mutation p.Q560E 0.29 tolerated(0.62) benign(0.038) TCGA-PN-A8MA-01 9 27286302 27286302 G C EQTN Missense_Mutation p.I180M 0.52 deleterious(0.03) benign(0.004) TCGA-PN-A8MA-01 9 65488094 65488094 G T FAM74A4 RNA 0.22 TCGA-PN-A8MA-01 X 10450613 10450614 - C MID1 Frame_Shift_Ins p.E307Gfs*18 0.22 TCGA-PN-A8MA-01 X 122760490 122760490 C T THOC2 Silent p.E927E 0.25 TCGA-PN-A8MA-01 X 134421097 134421099 CTT - ZNF75D In_Frame_Del p.R502del 0.29 TCGA-PN-A8MA-01 X 134856785 134856785 G A CT45A1 Missense_Mutation p.R187H 0.02 tolerated(0.11) benign(0.001) TCGA-PN-A8MA-01 X 135055765 135055765 C T MMGT1 Missense_Mutation p.A24T 0.28 deleterious(0.04) probably_damaging(0.991) TCGA-PN-A8MA-01 X 13778239 13778239 G A OFD1 Missense_Mutation p.E554K 0.23 deleterious(0) possibly_damaging(0.906) TCGA-PN-A8MA-01 X 142718560 142718560 A G SLITRK4 Missense_Mutation p.L122P 0.15 deleterious(0) probably_damaging(0.997) TCGA-PN-A8MA-01 X 1471118 1471118 G A IL3RA Missense_Mutation p.V142I 0.30 tolerated(0.13) benign(0.014) TCGA-PN-A8MA-01 X 149114132 149114132 C G LINC00894 RNA 0.16 TCGA-PN-A8MA-01 X 150349781 150349781 G T GPR50 Missense_Mutation p.A576S 0.67 tolerated_low_confidence(0.06) benign(0.051) TCGA-PN-A8MA-01 X 44928988 44928988 C A KDM6A Silent p.L696L 0.22 TCGA-PN-A8MA-01 X 44929065 44929065 G T KDM6A Missense_Mutation p.G722V 0.21 deleterious(0) possibly_damaging(0.466) TCGA-PN-A8MA-01 X 44929334 44929334 G T KDM6A Missense_Mutation p.D812Y 0.18 deleterious(0.01) benign(0.396) TCGA-PN-A8MA-01 X 50659220 50659220 G A BMP15 Silent p.R264R 0.24 TCGA-PN-A8MA-01 X 5821294 5821294 G C NLGN4X Missense_Mutation p.H475Q 0.24 tolerated(0.19) probably_damaging(0.973) TCGA-PN-A8MA-01 X 76763953 76763953 T C ATRX Missense_Mutation p.Q2452R 0.13 possibly_damaging(0.601) TCGA-Q1-A5R1-01 10 124187844 124187844 G A PLEKHA1 Intron 0.34 TCGA-Q1-A5R1-01 10 13481266 13481266 G A BEND7 Missense_Mutation p.S438L 0.33 possibly_damaging(0.504) TCGA-Q1-A5R1-01 10 70333214 70333215 - C TET1 Frame_Shift_Ins p.H374Pfs*9 0.15 TCGA-Q1-A5R1-01 10 70546378 70546378 T C CCAR1 Missense_Mutation p.C937R 0.35 deleterious(0) unknown(0) TCGA-Q1-A5R1-01 11 31832751 31832751 G A PAX6 Intron 0.24 TCGA-Q1-A5R1-01 11 61906405 61906405 G A INCENP Missense_Mutation p.E407K 0.36 tolerated(1) unknown(0) TCGA-Q1-A5R1-01 11 62489768 62489768 G A HNRNPUL2 Silent p.L394L 0.16 TCGA-Q1-A5R1-01 11 64764365 64764365 C T BATF2 Missense_Mutation p.G8R 0.41 tolerated(0.06) benign(0.413) TCGA-Q1-A5R1-01 11 7022682 7022682 A C ZNF214 Missense_Mutation p.Y78D 0.34 tolerated(0.19) benign(0.157) TCGA-Q1-A5R1-01 11 77937706 77937706 C T GAB2 Missense_Mutation p.A338T 0.05 tolerated(0.3) benign(0.012) TCGA-Q1-A5R1-01 12 10339160 10339160 C T TMEM52B Silent p.H73H 0.10 TCGA-Q1-A5R1-01 12 109724450 109724450 C T FOXN4 Intron 0.08 TCGA-Q1-A5R1-01 12 111352092 111352092 G A MYL2 Nonsense_Mutation p.R58* 0.11 TCGA-Q1-A5R1-01 12 21919090 21919090 G A KCNJ8 Missense_Mutation p.S281L 0.30 deleterious(0) possibly_damaging(0.504) TCGA-Q1-A5R1-01 12 54405015 54405015 G A HOXC8 Silent p.V193V 0.31 TCGA-Q1-A5R1-01 12 56221331 56221331 G A DNAJC14 Missense_Mutation p.S371F 0.53 tolerated(0.16) benign(0.004) TCGA-Q1-A5R1-01 12 66638954 66638954 C T IRAK3 Missense_Mutation p.P409L 0.35 tolerated(0.07) benign(0.281) TCGA-Q1-A5R1-01 14 39722048 39722048 C T MIA2 Missense_Mutation p.S555L 0.12 tolerated(1) benign(0.03) TCGA-Q1-A5R1-01 14 56106701 56106701 A T KTN1 Missense_Mutation p.S632C 0.37 deleterious(0) probably_damaging(0.978) TCGA-Q1-A5R1-01 15 73614661 73614661 C T HCN4 3'UTR 0.14 TCGA-Q1-A5R1-01 15 83680348 83680348 G A C15orf40 Silent p.L4L 0.38 TCGA-Q1-A5R1-01 15 93162638 93162638 G A FAM174B 3'UTR 0.33 TCGA-Q1-A5R1-01 15 93277233 93277233 C T RP11-386M24.4 RNA 0.39 TCGA-Q1-A5R1-01 16 3632683 3632683 C G SLX4 Missense_Mutation p.C1722S 0.39 tolerated(0.61) benign(0.012) TCGA-Q1-A5R1-01 16 55562473 55562473 C T LPCAT2 Nonsense_Mutation p.R166* 0.40 TCGA-Q1-A5R1-01 16 55909265 55909265 G A CES5A Intron 0.27 TCGA-Q1-A5R1-01 16 67645908 67645908 C T CTCF Missense_Mutation p.S279L 0.41 deleterious(0.02) probably_damaging(0.969) TCGA-Q1-A5R1-01 16 71884783 71884783 C T ATXN1L Silent p.A380A 0.07 TCGA-Q1-A5R1-01 16 89849269 89849269 C A FANCA Nonsense_Mutation p.E542* 0.45 TCGA-Q1-A5R1-01 17 10219326 10219326 G A MYH13 Missense_Mutation p.T1252M 0.05 tolerated(1) benign(0.001) TCGA-Q1-A5R1-01 17 18315314 18315314 C T RP1-37N7.3 RNA 0.22 TCGA-Q1-A5R1-01 17 3629351 3629351 G C GSG2 Missense_Mutation p.E708Q 0.31 deleterious(0.03) benign(0.033) TCGA-Q1-A5R1-01 17 40732053 40732053 G A FAM134C 3'UTR 0.23 TCGA-Q1-A5R1-01 17 6330281 6330281 G A AIPL1 Missense_Mutation p.L188F 0.07 deleterious(0.04) probably_damaging(0.995) TCGA-Q1-A5R1-01 17 7344828 7344828 C T FGF11 Missense_Mutation p.R78C 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-Q1-A5R1-01 17 78195442 78195442 C T SLC26A11 Missense_Mutation p.A28V 0.07 tolerated(0.21) benign(0.05) TCGA-Q1-A5R1-01 18 742944 742944 T G YES1 Missense_Mutation p.Y345S 0.35 deleterious(0) probably_damaging(0.944) TCGA-Q1-A5R1-01 19 12721468 12721468 G A ZNF490 Silent p.F9F 0.41 TCGA-Q1-A5R1-01 19 18331127 18331127 G A PDE4C Silent p.F237F 0.36 TCGA-Q1-A5R1-01 19 50243366 50243366 G A TSKS Silent p.D524D 0.12 TCGA-Q1-A5R1-01 19 5789395 5789395 G A DUS3L Silent p.P241P 0.32 TCGA-Q1-A5R1-01 1 113162416 113162416 C T CAPZA1 5'UTR 0.11 TCGA-Q1-A5R1-01 1 155036220 155036220 C T EFNA4 5'Flank 0.30 TCGA-Q1-A5R1-01 1 159824209 159824209 G A VSIG8 3'UTR 0.46 TCGA-Q1-A5R1-01 1 160580442 160580442 T A SLAMF1 3'UTR 0.05 TCGA-Q1-A5R1-01 1 160784494 160784494 G A LY9 Missense_Mutation p.V339M 0.10 tolerated(0.06) possibly_damaging(0.64) TCGA-Q1-A5R1-01 1 161135192 161135192 C T USP21 Silent p.Y551Y 0.05 TCGA-Q1-A5R1-01 1 204923458 204923458 G A NFASC Missense_Mutation p.A120T 0.07 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R1-01 1 229738448 229738448 G A TAF5L Nonsense_Mutation p.R156* 0.03 TCGA-Q1-A5R1-01 1 240421305 240421305 C A FMN2 Missense_Mutation p.H1376N 0.15 probably_damaging(0.997) TCGA-Q1-A5R1-01 1 32797166 32797166 G A HDAC1 Silent p.E357E 0.08 TCGA-Q1-A5R1-01 20 44540071 44540071 G A PLTP Silent p.L7L 0.32 TCGA-Q1-A5R1-01 20 57566437 57566437 A G NELFCD Missense_Mutation p.D360G 0.06 deleterious(0) benign(0.405) TCGA-Q1-A5R1-01 20 62588662 62588662 G A ZNF512B 3'UTR 0.45 TCGA-Q1-A5R1-01 21 34003875 34003875 T C SYNJ1 Silent p.Q1423Q 0.05 TCGA-Q1-A5R1-01 21 37609660 37609660 C T DOPEY2 Missense_Mutation p.T908M 0.07 deleterious(0) possibly_damaging(0.816) TCGA-Q1-A5R1-01 22 26887615 26887615 G A SRRD Missense_Mutation p.E333K 0.26 tolerated(0.74) benign(0.001) TCGA-Q1-A5R1-01 22 29915104 29915107 TGTT - THOC5 Frame_Shift_Del p.T460* 0.16 TCGA-Q1-A5R1-01 22 35947704 35947704 C T RASD2 Silent p.N142N 0.24 TCGA-Q1-A5R1-01 2 12880515 12880515 C T TRIB2 Silent p.L209L 0.22 TCGA-Q1-A5R1-01 2 26150077 26150077 G A KIF3C 3'UTR 0.13 TCGA-Q1-A5R1-01 2 71730372 71730372 C T DYSF Nonsense_Mutation p.R90* 0.05 TCGA-Q1-A5R1-01 3 100364821 100364821 C T GPR128 Nonsense_Mutation p.Q327* 0.33 TCGA-Q1-A5R1-01 3 141644553 141644553 G A ATP1B3 3'UTR 0.36 TCGA-Q1-A5R1-01 3 14225497 14225497 G A LSM3 Missense_Mutation p.E65K 0.07 deleterious(0.01) possibly_damaging(0.9) TCGA-Q1-A5R1-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.55 deleterious(0.02) probably_damaging(0.959) TCGA-Q1-A5R1-01 3 195492148 195492148 G A MUC4 Silent p.V4597V 0.65 TCGA-Q1-A5R1-01 3 30733652 30733652 C G TGFBR2 3'UTR 0.35 TCGA-Q1-A5R1-01 3 50231284 50231284 C T GNAT1 Missense_Mutation p.T183M 0.44 deleterious(0.04) probably_damaging(0.977) TCGA-Q1-A5R1-01 3 51457980 51457980 C T VPRBP Missense_Mutation p.R386Q 0.17 tolerated(0.11) benign(0.18) TCGA-Q1-A5R1-01 3 52328165 52328165 G A GLYCTK 3'Flank 0.24 TCGA-Q1-A5R1-01 3 57563077 57563077 C T ARF4 Missense_Mutation p.R99K 0.34 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-Q1-A5R1-01 3 69134134 69134134 C T ARL6IP5 5'UTR 0.24 TCGA-Q1-A5R1-01 4 103748632 103748632 G A UBE2D3 Intron 0.35 TCGA-Q1-A5R1-01 5 137727357 137727357 C G KDM3B Missense_Mutation p.S679C 0.41 tolerated_low_confidence(0.07) benign(0.078) TCGA-Q1-A5R1-01 5 137727474 137727474 C G KDM3B Missense_Mutation p.S718C 0.34 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-Q1-A5R1-01 5 137727607 137727607 C G KDM3B Silent p.L762L 0.34 TCGA-Q1-A5R1-01 5 137727650 137727650 C G KDM3B Missense_Mutation p.L777V 0.35 tolerated_low_confidence(0.6) benign(0.026) TCGA-Q1-A5R1-01 5 137727777 137727777 C G KDM3B Nonsense_Mutation p.S819* 0.40 TCGA-Q1-A5R1-01 5 140203293 140203293 C T PCDHA5 Missense_Mutation p.R645C 0.04 deleterious_low_confidence(0.05) benign(0.214) TCGA-Q1-A5R1-01 5 140615827 140615827 C T PCDHB18 RNA 0.07 TCGA-Q1-A5R1-01 5 38557749 38557749 G A LIFR Intron 0.33 TCGA-Q1-A5R1-01 6 31675381 31675381 G A LY6G6F Missense_Mutation p.V67M 0.08 tolerated(0.08) benign(0.003) TCGA-Q1-A5R1-01 6 31746941 31746941 C T VARS Missense_Mutation p.A1177T 0.27 deleterious(0.03) probably_damaging(0.988) TCGA-Q1-A5R1-01 6 34059759 34059759 C T GRM4 Missense_Mutation p.V213I 0.05 tolerated(0.23) benign(0.135) TCGA-Q1-A5R1-01 7 11143194 11143194 C G PHF14 3'UTR 0.20 TCGA-Q1-A5R1-01 7 128657089 128657089 G A TNPO3 Missense_Mutation p.L115F 0.14 deleterious(0.04) probably_damaging(0.975) TCGA-Q1-A5R1-01 7 140051159 140051159 T G SLC37A3 Missense_Mutation p.N266H 0.35 tolerated(0.06) possibly_damaging(0.841) TCGA-Q1-A5R1-01 7 1885312 1885312 C G AC110781.3 Intron 0.26 TCGA-Q1-A5R1-01 7 1885313 1885313 C G AC110781.3 Intron 0.22 TCGA-Q1-A5R1-01 7 1885314 1885314 G A AC110781.3 Intron 0.22 TCGA-Q1-A5R1-01 7 48081068 48081068 G C C7orf57 Missense_Mutation p.E65Q 0.42 deleterious(0.01) probably_damaging(0.947) TCGA-Q1-A5R1-01 7 5024638 5024638 G C RBAK-RBAKDN 5'UTR 0.06 TCGA-Q1-A5R1-01 8 49833855 49833855 C T SNAI2 5'UTR 0.19 TCGA-Q1-A5R1-01 8 87588319 87588319 C G CNGB3 Missense_Mutation p.E715Q 0.05 tolerated(0.48) possibly_damaging(0.559) TCGA-Q1-A5R1-01 9 108147760 108147760 G C SLC44A1 Missense_Mutation p.D643H 0.33 deleterious(0) possibly_damaging(0.503) TCGA-Q1-A5R1-01 9 130482408 130482408 T C TTC16 Missense_Mutation p.S160P 0.06 tolerated(0.14) benign(0.03) TCGA-Q1-A5R1-01 9 135801121 135801121 G C TSC1 Silent p.L72L 0.18 TCGA-Q1-A5R1-01 9 23762091 23762091 G A ELAVL2 Nonsense_Mutation p.Q48* 0.10 TCGA-Q1-A5R1-01 9 34372879 34372879 G A KIAA1161 5'UTR 0.26 TCGA-Q1-A5R1-01 9 35736237 35736237 C T CREB3 Missense_Mutation p.S237F 0.27 deleterious(0.01) probably_damaging(0.963) TCGA-Q1-A5R1-01 X 152482835 152482835 T C MAGEA1 Missense_Mutation p.Q59R 0.06 deleterious(0.02) benign(0.049) TCGA-Q1-A5R1-01 X 153716978 153716978 G A SLC10A3 Missense_Mutation p.P101L 0.32 tolerated(0.82) benign(0.001) TCGA-Q1-A5R1-01 X 18944619 18944619 T C PHKA2 Missense_Mutation p.I471V 0.53 tolerated(0.1) benign(0.032) TCGA-Q1-A5R1-01 X 68749616 68749616 C A FAM155B Missense_Mutation p.S412R 0.25 tolerated(0.6) benign(0.246) TCGA-Q1-A5R2-01 10 102296378 102296378 G A HIF1AN Missense_Mutation p.E130K 0.31 tolerated(0.49) benign(0.001) TCGA-Q1-A5R2-01 10 105330768 105330768 C T NEURL1 Silent p.L75L 0.34 TCGA-Q1-A5R2-01 10 11504337 11504337 C T USP6NL 3'UTR 0.21 TCGA-Q1-A5R2-01 10 121285616 121285617 - T RGS10 Frame_Shift_Ins p.E62Gfs*4 0.14 TCGA-Q1-A5R2-01 10 121580411 121580411 C T INPP5F Missense_Mutation p.S647F 0.06 deleterious(0.04) possibly_damaging(0.595) TCGA-Q1-A5R2-01 10 123988858 123988858 C G TACC2 Intron 0.17 TCGA-Q1-A5R2-01 10 135440256 135440256 C G FRG2B 5'UTR 0.09 TCGA-Q1-A5R2-01 10 16981092 16981092 C T CUBN Nonsense_Mutation p.W1868* 0.26 TCGA-Q1-A5R2-01 10 28273115 28273115 G C ARMC4 Nonsense_Mutation p.S227* 0.11 TCGA-Q1-A5R2-01 10 30317165 30317165 T A KIAA1462 Missense_Mutation p.T638S 0.09 deleterious(0.04) probably_damaging(0.969) TCGA-Q1-A5R2-01 10 34620159 34620159 G A PARD3 Missense_Mutation p.R910C 0.24 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 10 49392824 49392824 G C FRMPD2 Missense_Mutation p.I820M 0.21 deleterious(0.02) possibly_damaging(0.89) TCGA-Q1-A5R2-01 10 50819881 50819881 T G SLC18A3 Silent p.A365A 0.30 TCGA-Q1-A5R2-01 10 51224911 51224911 C G AGAP8 3'UTR 0.19 TCGA-Q1-A5R2-01 10 55626458 55626458 G A PCDH15 Nonsense_Mutation p.Q1221* 0.15 TCGA-Q1-A5R2-01 10 70404804 70404804 C T TET1 Missense_Mutation p.S773L 0.43 tolerated(0.11) benign(0.007) TCGA-Q1-A5R2-01 10 70406339 70406339 C G TET1 Missense_Mutation p.Q1285E 0.25 deleterious(0) possibly_damaging(0.897) TCGA-Q1-A5R2-01 10 71021857 71021857 C T HKDC1 Intron 0.21 TCGA-Q1-A5R2-01 10 72195234 72195234 C T AC022532.1 Missense_Mutation p.L61F 0.31 possibly_damaging(0.773) TCGA-Q1-A5R2-01 10 72326360 72326360 C T PALD1 Silent p.Y814Y 0.17 TCGA-Q1-A5R2-01 10 79396286 79396286 G A KCNMA1 Intron 0.26 TCGA-Q1-A5R2-01 10 94297221 94297221 C T IDE Missense_Mutation p.R62Q 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-Q1-A5R2-01 10 96356854 96356854 G A HELLS Missense_Mutation p.R803Q 0.18 deleterious(0) probably_damaging(0.953) TCGA-Q1-A5R2-01 10 97816696 97816696 G A CCNJ Silent p.L173L 0.17 TCGA-Q1-A5R2-01 11 102649977 102649977 C G MMP10 Missense_Mutation p.E155Q 0.05 tolerated(0.25) benign(0.288) TCGA-Q1-A5R2-01 11 1079721 1079721 C T MUC2 Missense_Mutation p.S313L 0.06 probably_damaging(1) TCGA-Q1-A5R2-01 11 117389456 117389456 G A DSCAML1 Missense_Mutation p.S472L 0.08 tolerated(0.12) possibly_damaging(0.852) TCGA-Q1-A5R2-01 11 121500219 121500219 G C SORL1 Missense_Mutation p.D2198H 0.18 deleterious(0) probably_damaging(0.914) TCGA-Q1-A5R2-01 11 124742309 124742309 G A ROBO3 Silent p.P397P 0.10 TCGA-Q1-A5R2-01 11 125333410 125333410 G C FEZ1 Missense_Mutation p.I156M 0.11 deleterious(0) possibly_damaging(0.768) TCGA-Q1-A5R2-01 11 126135016 126135016 C G SRPR Missense_Mutation p.D455H 0.07 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 11 18750523 18750523 C G PTPN5 Missense_Mutation p.M552I 0.22 deleterious(0) possibly_damaging(0.78) TCGA-Q1-A5R2-01 11 19192109 19192109 C G ZDHHC13 Silent p.L542L 0.22 TCGA-Q1-A5R2-01 11 22770758 22770758 C T GAS2 Missense_Mutation p.S189L 0.25 tolerated(0.4) benign(0.101) TCGA-Q1-A5R2-01 11 28056945 28056945 C T KIF18A Silent p.R831R 0.44 TCGA-Q1-A5R2-01 11 3663063 3663063 G A ART5 Silent p.L10L 0.12 TCGA-Q1-A5R2-01 11 45992865 45992865 C T PHF21A Silent p.L138L 0.12 TCGA-Q1-A5R2-01 11 58391849 58391849 G C CNTF Missense_Mutation p.E153Q 0.22 deleterious(0.04) probably_damaging(0.936) TCGA-Q1-A5R2-01 11 64622147 64622147 C T EHD1 Silent p.P421P 0.05 TCGA-Q1-A5R2-01 11 66241483 66241483 C G PELI3 Intron 0.09 TCGA-Q1-A5R2-01 11 66616181 66616181 C G PC 3'UTR 0.14 TCGA-Q1-A5R2-01 11 7686762 7686762 G A CYB5R2 Missense_Mutation p.S225L 0.17 tolerated(0.07) possibly_damaging(0.696) TCGA-Q1-A5R2-01 11 77921400 77921400 C A USP35 Silent p.L833L 0.32 TCGA-Q1-A5R2-01 11 78412572 78412572 C T TENM4 Missense_Mutation p.E1696K 0.33 tolerated(0.16) benign(0.179) TCGA-Q1-A5R2-01 11 86663369 86663369 C G FZD4 Silent p.L143L 0.07 TCGA-Q1-A5R2-01 11 9199743 9199743 C G DENND5A Missense_Mutation p.L614F 0.06 tolerated(0.5) benign(0.01) TCGA-Q1-A5R2-01 11 92917608 92917608 A G SLC36A4 Silent p.N86N 0.12 TCGA-Q1-A5R2-01 12 104460085 104460085 G A HCFC2 Missense_Mutation p.E102K 0.15 deleterious(0) benign(0.108) TCGA-Q1-A5R2-01 12 104719207 104719207 G A TXNRD1 Silent p.T436T 0.24 TCGA-Q1-A5R2-01 12 109878605 109878605 C T MYO1H Silent p.R821R 0.24 TCGA-Q1-A5R2-01 12 109907342 109907342 C T KCTD10 Missense_Mutation p.M65I 0.09 tolerated(0.22) benign(0.006) TCGA-Q1-A5R2-01 12 112513503 112513503 G A NAA25 Missense_Mutation p.S252F 0.21 tolerated(0.75) benign(0.021) TCGA-Q1-A5R2-01 12 113595264 113595264 C T DDX54 3'UTR 0.08 TCGA-Q1-A5R2-01 12 114387954 114387954 T C RBM19 Missense_Mutation p.I336V 0.09 tolerated(1) benign(0.002) TCGA-Q1-A5R2-01 12 11506810 11506810 T A PRB1 Missense_Mutation p.K76M 0.14 deleterious_low_confidence(0) unknown(0) TCGA-Q1-A5R2-01 12 120934235 120934235 G A DYNLL1 Missense_Mutation p.R4Q 0.19 tolerated(0.72) benign(0.005) TCGA-Q1-A5R2-01 12 124228764 124228764 C T ATP6V0A2 Silent p.I402I 0.14 TCGA-Q1-A5R2-01 12 124247044 124247044 C T DNAH10 5'UTR 0.09 TCGA-Q1-A5R2-01 12 124267767 124267767 C T DNAH10 Nonsense_Mutation p.Q258* 0.11 TCGA-Q1-A5R2-01 12 124886952 124886952 G C NCOR2 Silent p.L546L 0.15 TCGA-Q1-A5R2-01 12 125396263 125396263 G C UBC Silent p.V685V 0.11 TCGA-Q1-A5R2-01 12 18435273 18435273 G A PIK3C2G Silent p.L86L 0.14 TCGA-Q1-A5R2-01 12 20868094 20868094 C G SLCO1C1 Missense_Mutation p.S184C 0.14 deleterious(0) probably_damaging(0.987) TCGA-Q1-A5R2-01 12 31237918 31237918 G A DDX11 Missense_Mutation p.E166K 0.19 tolerated(0.24) possibly_damaging(0.818) TCGA-Q1-A5R2-01 12 34179518 34179518 C T ALG10 Nonsense_Mutation p.Q364* 0.07 TCGA-Q1-A5R2-01 12 344275 344275 G A SLC6A13 Missense_Mutation p.T271M 0.26 deleterious(0) possibly_damaging(0.735) TCGA-Q1-A5R2-01 12 41463930 41463930 T C CNTN1 3'UTR 0.21 TCGA-Q1-A5R2-01 12 46599882 46599882 C G SLC38A1 Silent p.L209L 0.10 TCGA-Q1-A5R2-01 12 49373340 49373340 G C WNT1 Missense_Mutation p.S65T 0.12 tolerated(1) benign(0.145) TCGA-Q1-A5R2-01 12 49420844 49420844 C A KMT2D Nonsense_Mutation p.E4969* 0.12 TCGA-Q1-A5R2-01 12 49434256 49434256 C A KMT2D Nonsense_Mutation p.E2433* 0.14 TCGA-Q1-A5R2-01 12 49437523 49437523 C T KMT2D Missense_Mutation p.A1788T 0.19 possibly_damaging(0.804) TCGA-Q1-A5R2-01 12 53431271 53431271 C G EIF4B Missense_Mutation p.S462C 0.18 deleterious(0.02) benign(0.024) TCGA-Q1-A5R2-01 12 54635512 54635512 G C CBX5 3'UTR 0.07 TCGA-Q1-A5R2-01 12 56504248 56504248 C G PA2G4 Nonsense_Mutation p.S232* 0.16 TCGA-Q1-A5R2-01 12 56722356 56722356 C T PAN2 Missense_Mutation p.D118N 0.24 deleterious(0.03) possibly_damaging(0.559) TCGA-Q1-A5R2-01 12 57849201 57849201 G C INHBE 5'UTR 0.11 TCGA-Q1-A5R2-01 12 57919782 57919782 G A MBD6 Missense_Mutation p.R344Q 0.18 deleterious_low_confidence(0) unknown(0) TCGA-Q1-A5R2-01 12 58114795 58114795 G C OS9 3'UTR 0.14 TCGA-Q1-A5R2-01 12 6559377 6559377 G C CD27 Missense_Mutation p.E103Q 0.09 tolerated(0.19) benign(0.025) TCGA-Q1-A5R2-01 12 66357052 66357052 G A HMGA2 Missense_Mutation p.E104K 0.08 tolerated(0.27) unknown(0) TCGA-Q1-A5R2-01 12 6941065 6941065 G C LEPREL2 Missense_Mutation p.S399T 0.13 tolerated(1) benign(0.005) TCGA-Q1-A5R2-01 12 71946981 71946981 C T LGR5 Missense_Mutation p.S186L 0.18 deleterious(0.04) benign(0.136) TCGA-Q1-A5R2-01 12 72071173 72071173 G C THAP2 3'UTR 0.13 TCGA-Q1-A5R2-01 12 81741424 81741424 G A PPFIA2 Missense_Mutation p.S707F 0.26 deleterious(0.01) probably_damaging(0.959) TCGA-Q1-A5R2-01 12 99138086 99138086 C T ANKS1B Intron 0.24 TCGA-Q1-A5R2-01 12 99145202 99145202 A T ANKS1B Silent p.L1201L 0.18 TCGA-Q1-A5R2-01 13 101707810 101707810 G A NALCN Missense_Mutation p.S1685L 0.08 tolerated(0.07) benign(0.005) TCGA-Q1-A5R2-01 13 108959350 108959350 C G TNFSF13B 3'UTR 0.18 TCGA-Q1-A5R2-01 13 38266214 38266214 G T TRPC4 Missense_Mutation p.H386N 0.35 deleterious(0.05) benign(0.029) TCGA-Q1-A5R2-01 13 39616414 39616414 G C NHLRC3 Missense_Mutation p.L186F 0.12 deleterious(0.01) possibly_damaging(0.741) TCGA-Q1-A5R2-01 13 41768308 41768308 G A KBTBD7 Missense_Mutation p.S29L 0.08 deleterious(0) benign(0.221) TCGA-Q1-A5R2-01 13 42164839 42164839 C T VWA8 Silent p.K1683K 0.20 TCGA-Q1-A5R2-01 13 46549669 46549669 T A ZC3H13 Missense_Mutation p.R739S 0.10 unknown(0) TCGA-Q1-A5R2-01 13 49719920 49719920 G A FNDC3A Missense_Mutation p.D276N 0.15 tolerated(0.71) benign(0.014) TCGA-Q1-A5R2-01 13 49822118 49822118 G C CDADC1 5'UTR 0.38 TCGA-Q1-A5R2-01 13 61034569 61034569 A T TDRD3 Missense_Mutation p.K83M 0.09 deleterious(0) probably_damaging(0.998) TCGA-Q1-A5R2-01 13 73349431 73349431 C T DIS3 Nonsense_Mutation p.W302* 0.10 TCGA-Q1-A5R2-01 13 77595875 77595875 G A FBXL3 Nonsense_Mutation p.Q41* 0.08 TCGA-Q1-A5R2-01 14 105420437 105420437 C T AHNAK2 Missense_Mutation p.E451K 0.13 possibly_damaging(0.526) TCGA-Q1-A5R2-01 14 105611334 105611334 C T JAG2 Missense_Mutation p.R1006Q 0.11 tolerated(0.42) benign(0.265) TCGA-Q1-A5R2-01 14 21501797 21501797 G A RNASE13 3'UTR 0.29 TCGA-Q1-A5R2-01 14 21971383 21971383 G A METTL3 Missense_Mutation p.S219L 0.26 tolerated(0.1) benign(0.022) TCGA-Q1-A5R2-01 14 23884676 23884676 C T MYH7 Missense_Mutation p.D1733N 0.18 deleterious(0) probably_damaging(0.987) TCGA-Q1-A5R2-01 14 24545487 24545487 G C CPNE6 Missense_Mutation p.D352H 0.11 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 14 24659605 24659605 C G TM9SF1 Missense_Mutation p.G470R 0.11 deleterious(0) probably_damaging(0.992) TCGA-Q1-A5R2-01 14 29237007 29237007 G A FOXG1 Silent p.K174K 0.16 TCGA-Q1-A5R2-01 14 32315788 32315788 G C NUBPL Missense_Mutation p.E269Q 0.16 tolerated(0.15) benign(0.004) TCGA-Q1-A5R2-01 14 47310585 47310585 G A MDGA2 3'UTR 0.14 TCGA-Q1-A5R2-01 14 50760949 50760949 C T L2HGDH Missense_Mutation p.E142K 0.28 tolerated(0.13) benign(0.053) TCGA-Q1-A5R2-01 14 65208125 65208125 G A PLEKHG3 Silent p.G574G 0.11 TCGA-Q1-A5R2-01 14 71060051 71060051 G C MED6 Missense_Mutation p.Q107E 0.10 deleterious(0) probably_damaging(0.977) TCGA-Q1-A5R2-01 14 77818025 77818025 G A TMED8 Missense_Mutation p.S63L 0.14 tolerated_low_confidence(0.07) possibly_damaging(0.492) TCGA-Q1-A5R2-01 14 95053680 95053680 C T SERPINA5 Intron 0.09 TCGA-Q1-A5R2-01 14 96777609 96777609 C G ATG2B Missense_Mutation p.E1336Q 0.16 deleterious(0.03) probably_damaging(0.996) TCGA-Q1-A5R2-01 14 96944861 96944861 C A AK7 Missense_Mutation p.P539T 0.11 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 15 101605763 101605763 C T LRRK1 Silent p.Y1707Y 0.14 TCGA-Q1-A5R2-01 15 22990104 22990104 C T CYFIP1 Silent p.F908F 0.26 TCGA-Q1-A5R2-01 15 42058978 42058978 C T MGA Missense_Mutation p.L2900F 0.10 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 15 42551148 42551148 C G TMEM87A Intron 0.07 TCGA-Q1-A5R2-01 15 42858841 42858841 G C HAUS2 Missense_Mutation p.E179Q 0.36 deleterious(0) possibly_damaging(0.736) TCGA-Q1-A5R2-01 15 42859114 42859114 G A HAUS2 3'UTR 0.28 TCGA-Q1-A5R2-01 15 43769880 43769880 A C TP53BP1 Missense_Mutation p.L289R 0.17 tolerated(0.06) benign(0.018) TCGA-Q1-A5R2-01 15 55669316 55669316 G A CCPG1 Silent p.I95I 0.13 TCGA-Q1-A5R2-01 15 63932470 63932470 C T HERC1 Missense_Mutation p.E3928K 0.19 benign(0.118) TCGA-Q1-A5R2-01 15 65204164 65204164 G A ANKDD1A Splice_Site p.X12_splice 0.38 TCGA-Q1-A5R2-01 15 68118274 68118274 G A SKOR1 Nonsense_Mutation p.W222* 0.09 TCGA-Q1-A5R2-01 15 68122534 68122534 G C SKOR1 Missense_Mutation p.D708H 0.10 deleterious_low_confidence(0.02) probably_damaging(0.934) TCGA-Q1-A5R2-01 15 69730693 69730693 G C KIF23 Missense_Mutation p.Q554H 0.11 tolerated(0.05) possibly_damaging(0.809) TCGA-Q1-A5R2-01 15 72954664 72954664 C T GOLGA6B Silent p.L307L 0.29 TCGA-Q1-A5R2-01 15 73622056 73622056 C T HCN4 Missense_Mutation p.R483Q 0.17 tolerated(0.52) unknown(0) TCGA-Q1-A5R2-01 15 82574786 82574786 G C FAM154B Missense_Mutation p.E194Q 0.22 tolerated(0.25) benign(0.292) TCGA-Q1-A5R2-01 15 85164941 85164941 C T ZSCAN2 Silent p.S505S 0.11 TCGA-Q1-A5R2-01 16 14041676 14041676 C G ERCC4 Silent p.L741L 0.22 TCGA-Q1-A5R2-01 16 1573871 1573871 C G IFT140 Missense_Mutation p.E1076D 0.15 tolerated(0.08) benign(0.009) TCGA-Q1-A5R2-01 16 22237288 22237288 C T EEF2K Missense_Mutation p.H80Y 0.10 tolerated(0.92) benign(0.081) TCGA-Q1-A5R2-01 16 2514077 2514077 G A C16orf59 Silent p.G334G 0.20 TCGA-Q1-A5R2-01 16 27692767 27692767 G A KIAA0556 Missense_Mutation p.E286K 0.10 deleterious(0) probably_damaging(0.994) TCGA-Q1-A5R2-01 16 29859269 29859269 C G MVP Missense_Mutation p.Q881E 0.12 tolerated_low_confidence(0.21) benign(0.014) TCGA-Q1-A5R2-01 16 30309792 30309792 G A RP11-347C12.2 RNA 0.10 TCGA-Q1-A5R2-01 16 30380727 30380727 G C TBC1D10B Missense_Mutation p.R260G 0.10 deleterious_low_confidence(0.03) benign(0.038) TCGA-Q1-A5R2-01 16 4641742 4641742 G C C16orf96 Missense_Mutation p.E890Q 0.14 deleterious(0) possibly_damaging(0.607) TCGA-Q1-A5R2-01 16 57254652 57254652 G A RSPRY1 Missense_Mutation p.E304K 0.13 deleterious(0.01) benign(0.325) TCGA-Q1-A5R2-01 16 67183294 67183294 G A B3GNT9 Silent p.H365H 0.10 TCGA-Q1-A5R2-01 16 67298406 67298406 G A SLC9A5 Missense_Mutation p.R665H 0.08 tolerated(0.52) possibly_damaging(0.556) TCGA-Q1-A5R2-01 16 71571601 71571601 G A CHST4 Missense_Mutation p.E341K 0.08 tolerated(0.62) benign(0.006) TCGA-Q1-A5R2-01 16 72831666 72831666 T C ZFHX3 Missense_Mutation p.T1639A 0.13 benign(0.002) TCGA-Q1-A5R2-01 16 7761460 7761460 A C RBFOX1 3'UTR 0.19 TCGA-Q1-A5R2-01 16 81031011 81031011 G A CMC2 5'UTR 0.12 TCGA-Q1-A5R2-01 16 81145801 81145801 G A PKD1L2 RNA 0.13 TCGA-Q1-A5R2-01 16 88705717 88705717 G A IL17C Missense_Mutation p.R112H 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-Q1-A5R2-01 17 10362616 10362616 G A MYH4 Silent p.F513F 0.05 TCGA-Q1-A5R2-01 17 16676920 16676920 G C CCDC144A 3'UTR 0.05 TCGA-Q1-A5R2-01 17 18160237 18160237 C T FLII Missense_Mutation p.A54T 0.21 tolerated(0.43) benign(0.03) TCGA-Q1-A5R2-01 17 19238692 19238692 C G EPN2 3'UTR 0.12 TCGA-Q1-A5R2-01 17 28754474 28754474 G C CPD Missense_Mutation p.D639H 0.06 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 17 33768643 33768643 G A SLFN13 Missense_Mutation p.H621Y 0.13 tolerated(0.11) benign(0.055) TCGA-Q1-A5R2-01 17 37826426 37826426 C T PNMT Silent p.L211L 0.08 TCGA-Q1-A5R2-01 17 38638451 38638451 G C TNS4 Silent p.L534L 0.16 TCGA-Q1-A5R2-01 17 40117340 40117340 G C CNP 5'Flank 0.38 TCGA-Q1-A5R2-01 17 43345029 43345029 C T MAP3K14-AS1 RNA 0.06 TCGA-Q1-A5R2-01 17 45388330 45388330 T C ITGB3 3'UTR 0.25 TCGA-Q1-A5R2-01 17 45886521 45886521 G A OSBPL7 Silent p.V697V 0.26 TCGA-Q1-A5R2-01 17 4693081 4693081 C T GLTPD2 Silent p.F122F 0.22 TCGA-Q1-A5R2-01 17 47121448 47121448 G C IGF2BP1 Missense_Mutation p.K440N 0.14 deleterious(0) possibly_damaging(0.827) TCGA-Q1-A5R2-01 17 56332227 56332227 C T LPO Silent p.L387L 0.12 TCGA-Q1-A5R2-01 17 56399684 56399684 G A BZRAP1 Silent p.V469V 0.26 TCGA-Q1-A5R2-01 17 56582214 56582214 C G MTMR4 Missense_Mutation p.D409H 0.12 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 17 56682358 56682358 G A TEX14 Silent p.I445I 0.18 TCGA-Q1-A5R2-01 17 65132168 65132168 G C HELZ Missense_Mutation p.L1034V 0.16 deleterious(0) probably_damaging(0.998) TCGA-Q1-A5R2-01 17 6799671 6799671 G C AC027763.2 Intron 0.08 TCGA-Q1-A5R2-01 17 7318978 7318978 G A NLGN2 Missense_Mutation p.E396K 0.08 deleterious(0.02) benign(0.179) TCGA-Q1-A5R2-01 17 73519403 73519403 G C TSEN54 Missense_Mutation p.D434H 0.07 deleterious(0.01) benign(0.093) TCGA-Q1-A5R2-01 17 73760097 73760097 G C GALK1 Missense_Mutation p.S79C 0.07 tolerated(0.18) benign(0.005) TCGA-Q1-A5R2-01 17 76799495 76799495 C T USP36 Missense_Mutation p.G928S 0.12 tolerated(0.79) benign(0.004) TCGA-Q1-A5R2-01 17 79206042 79206042 G A ENTHD2 Intron 0.20 TCGA-Q1-A5R2-01 18 11884271 11884271 G A MPPE1 3'UTR 0.15 TCGA-Q1-A5R2-01 18 21819247 21819247 G C OSBPL1A Missense_Mutation p.L461V 0.15 tolerated(0.34) benign(0.02) TCGA-Q1-A5R2-01 18 2937846 2937846 C T LPIN2 Missense_Mutation p.D338N 0.23 tolerated(0.4) benign(0.001) TCGA-Q1-A5R2-01 18 32374109 32374109 C G DTNA Missense_Mutation p.S86C 0.12 deleterious(0.02) probably_damaging(0.987) TCGA-Q1-A5R2-01 18 33706184 33706184 C G SLC39A6 Missense_Mutation p.E263Q 0.21 tolerated(0.1) benign(0.035) TCGA-Q1-A5R2-01 18 5394771 5394771 C G EPB41L3 Missense_Mutation p.E1059Q 0.14 deleterious(0) probably_damaging(0.997) TCGA-Q1-A5R2-01 18 60563237 60563237 G T PHLPP1 Missense_Mutation p.D813Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 18 77664144 77664144 G A PQLC1 Silent p.F216F 0.08 TCGA-Q1-A5R2-01 18 9522346 9522346 G A RALBP1 Missense_Mutation p.E298K 0.11 tolerated(0.2) benign(0.026) TCGA-Q1-A5R2-01 19 11750627 11750627 C G ZNF833P RNA 0.05 TCGA-Q1-A5R2-01 19 1219392 1219392 C T STK11 Silent p.F148F 0.09 TCGA-Q1-A5R2-01 19 12637800 12637800 G C ZNF564 Missense_Mutation p.F374L 0.06 tolerated(0.08) possibly_damaging(0.551) TCGA-Q1-A5R2-01 19 13049556 13049556 C G CALR Silent p.V21V 0.20 TCGA-Q1-A5R2-01 19 14230443 14230443 G C ASF1B 3'UTR 0.21 TCGA-Q1-A5R2-01 19 14230521 14230521 G A ASF1B 3'UTR 0.17 TCGA-Q1-A5R2-01 19 14230648 14230648 G A ASF1B 3'UTR 0.27 TCGA-Q1-A5R2-01 19 14676568 14676568 C A TECR Missense_Mutation p.S271Y 0.09 deleterious(0) possibly_damaging(0.797) TCGA-Q1-A5R2-01 19 15568600 15568600 C A RASAL3 Nonsense_Mutation p.E312* 0.17 TCGA-Q1-A5R2-01 19 16060198 16060198 C T OR10H4 Silent p.I127I 0.22 TCGA-Q1-A5R2-01 19 18273798 18273798 G C PIK3R2 Silent p.L377L 0.20 TCGA-Q1-A5R2-01 19 18853803 18853803 G C CRTC1 Missense_Mutation p.Q70H 0.06 deleterious(0.02) probably_damaging(0.964) TCGA-Q1-A5R2-01 19 19740746 19740746 C G GMIP 3'UTR 0.08 TCGA-Q1-A5R2-01 19 1979936 1979936 G A CSNK1G2 Silent p.L371L 0.23 TCGA-Q1-A5R2-01 19 21910153 21910153 C T ZNF100 Missense_Mutation p.E321K 0.07 deleterious(0.05) possibly_damaging(0.549) TCGA-Q1-A5R2-01 19 33353426 33353426 G A SLC7A9 Missense_Mutation p.A182V 0.12 tolerated(0.44) benign(0.082) TCGA-Q1-A5R2-01 19 36231340 36231340 C T IGFLR1 Missense_Mutation p.G95R 0.16 tolerated(0.14) probably_damaging(0.999) TCGA-Q1-A5R2-01 19 40581202 40581202 G A ZNF780A Missense_Mutation p.H384Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 19 41350622 41350622 G C CYP2A6 Missense_Mutation p.S406C 0.05 benign(0.032) TCGA-Q1-A5R2-01 19 43013005 43013005 C G CEACAM1 3'UTR 0.18 TCGA-Q1-A5R2-01 19 43259396 43259396 G C PSG8 Missense_Mutation p.I244M 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-Q1-A5R2-01 19 4457626 4457626 G C UBXN6 Silent p.L23L 0.14 TCGA-Q1-A5R2-01 19 44732432 44732432 G A ZNF227 Intron 0.33 TCGA-Q1-A5R2-01 19 46176166 46176166 G A GIPR Missense_Mutation p.R113K 0.10 tolerated(0.15) probably_damaging(0.999) TCGA-Q1-A5R2-01 19 46888163 46888163 C T PPP5C Nonsense_Mutation p.R301* 0.07 TCGA-Q1-A5R2-01 19 48965272 48965272 C T KCNJ14 Silent p.F97F 0.27 TCGA-Q1-A5R2-01 19 49377902 49377902 C T PPP1R15A Missense_Mutation p.S471F 0.23 deleterious(0.04) probably_damaging(0.962) TCGA-Q1-A5R2-01 19 4950940 4950940 G A UHRF1 RNA 0.11 TCGA-Q1-A5R2-01 19 51525852 51525852 C A KLK11 Silent p.T266T 0.10 TCGA-Q1-A5R2-01 19 52222782 52222782 G A HAS1 Missense_Mutation p.R127W 0.10 deleterious(0.01) possibly_damaging(0.889) TCGA-Q1-A5R2-01 19 52870051 52870051 C T ZNF610 3'UTR 0.39 TCGA-Q1-A5R2-01 19 53217357 53217357 G C ZNF611 Nonsense_Mutation p.S34* 0.20 TCGA-Q1-A5R2-01 19 53304776 53304776 C G ZNF28 Missense_Mutation p.D108H 0.07 tolerated(0.52) benign(0.235) TCGA-Q1-A5R2-01 19 53343783 53343783 G A ZNF468 3'UTR 0.10 TCGA-Q1-A5R2-01 19 53668443 53668443 C T ZNF665 Missense_Mutation p.E434K 0.12 tolerated(0.08) possibly_damaging(0.79) TCGA-Q1-A5R2-01 19 53668886 53668886 C G ZNF665 Missense_Mutation p.G286A 0.08 deleterious(0.03) possibly_damaging(0.458) TCGA-Q1-A5R2-01 19 54604149 54604149 G A OSCAR 5'Flank 0.11 TCGA-Q1-A5R2-01 19 54672241 54672241 G A TMC4 Missense_Mutation p.S209F 0.27 tolerated(0.33) benign(0.006) TCGA-Q1-A5R2-01 19 54822935 54822935 G T LILRA5 Nonsense_Mutation p.S154* 0.13 TCGA-Q1-A5R2-01 19 55559864 55559864 G A RDH13 Missense_Mutation p.S164L 0.12 deleterious(0) possibly_damaging(0.742) TCGA-Q1-A5R2-01 19 55708498 55708498 G A PTPRH Silent p.L659L 0.21 TCGA-Q1-A5R2-01 19 57006285 57006285 T C ZNF667-AS1 RNA 0.16 TCGA-Q1-A5R2-01 19 57325574 57325574 T G PEG3 Missense_Mutation p.E1412D 0.16 tolerated(0.33) benign(0.01) TCGA-Q1-A5R2-01 19 58004450 58004450 C T ZNF419 Silent p.L176L 0.31 TCGA-Q1-A5R2-01 19 58131551 58131551 G A ZNF134 Missense_Mutation p.E22K 0.15 tolerated(0.07) possibly_damaging(0.453) TCGA-Q1-A5R2-01 19 58384313 58384313 G A ZNF814 Silent p.L815L 0.17 TCGA-Q1-A5R2-01 19 58639117 58639117 C G ZNF329 3'UTR 0.32 TCGA-Q1-A5R2-01 19 58983547 58983547 C T ZNF324 3'UTR 0.06 TCGA-Q1-A5R2-01 19 59010588 59010588 C T SLC27A5 Splice_Site p.X556_splice 0.11 TCGA-Q1-A5R2-01 19 5914740 5914740 C T CAPS Missense_Mutation p.R84W 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-Q1-A5R2-01 19 619621 619621 C G POLRMT Missense_Mutation p.E1011Q 0.06 deleterious(0.04) possibly_damaging(0.868) TCGA-Q1-A5R2-01 19 9959799 9959799 T C PIN1 Missense_Mutation p.F139S 0.44 deleterious(0) probably_damaging(0.962) TCGA-Q1-A5R2-01 1 1019451 1019451 C T C1orf159 Intron 0.16 TCGA-Q1-A5R2-01 1 10713654 10713654 G A CASZ1 Silent p.L820L 0.15 TCGA-Q1-A5R2-01 1 109007929 109007929 C T NBPF6 Nonsense_Mutation p.R515* 0.07 TCGA-Q1-A5R2-01 1 109241289 109241289 C G PRPF38B Missense_Mutation p.L208V 0.09 deleterious(0.01) probably_damaging(0.984) TCGA-Q1-A5R2-01 1 109795251 109795251 C G CELSR2 Silent p.V850V 0.12 TCGA-Q1-A5R2-01 1 114307148 114307148 C T RSBN1 3'UTR 0.20 TCGA-Q1-A5R2-01 1 115592786 115592786 G C TSPAN2 3'UTR 0.09 TCGA-Q1-A5R2-01 1 117663374 117663374 G T TRIM45 Nonsense_Mutation p.C150* 0.11 TCGA-Q1-A5R2-01 1 12164498 12164498 G A TNFRSF8 Missense_Mutation p.G111S 0.16 deleterious(0.01) probably_damaging(1) TCGA-Q1-A5R2-01 1 12954896 12954896 C G PRAMEF10 Missense_Mutation p.M129I 0.35 tolerated(0.07) benign(0.037) TCGA-Q1-A5R2-01 1 145115788 145115788 G A SEC22B RNA 0.08 TCGA-Q1-A5R2-01 1 145696481 145696481 C T CD160 3'UTR 0.34 TCGA-Q1-A5R2-01 1 150482469 150482469 G A ECM1 Missense_Mutation p.E126K 0.14 tolerated(0.19) benign(0.022) TCGA-Q1-A5R2-01 1 150917615 150917615 G C SETDB1 Intron 0.10 TCGA-Q1-A5R2-01 1 155226555 155226555 C T SCAMP3 Silent p.P269P 0.15 TCGA-Q1-A5R2-01 1 156309577 156309577 G A TSACC Missense_Mutation p.R10K 0.11 tolerated_low_confidence(0.59) benign(0.007) TCGA-Q1-A5R2-01 1 156628843 156628843 G A BCAN Missense_Mutation p.D885N 0.10 tolerated_low_confidence(0.21) benign(0.03) TCGA-Q1-A5R2-01 1 156704179 156704179 C G RRNAD1 Missense_Mutation p.H339D 0.14 deleterious(0) probably_damaging(0.969) TCGA-Q1-A5R2-01 1 158725553 158725553 C T OR6K6 Silent p.I316I 0.20 TCGA-Q1-A5R2-01 1 161697042 161697042 C A FCRLB Missense_Mutation p.P291T 0.14 tolerated(0.26) benign(0.014) TCGA-Q1-A5R2-01 1 165651451 165651451 G A ALDH9A1 Missense_Mutation p.S162L 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-Q1-A5R2-01 1 16577965 16577965 C G FBXO42 Missense_Mutation p.G452R 0.17 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-Q1-A5R2-01 1 167887558 167887558 C G MPC2 3'UTR 0.16 TCGA-Q1-A5R2-01 1 16914272 16914272 C T NBPF1 Missense_Mutation p.E172K 0.03 deleterious(0.03) possibly_damaging(0.486) TCGA-Q1-A5R2-01 1 171250002 171250002 C T FMO1 Silent p.F235F 0.07 TCGA-Q1-A5R2-01 1 174983549 174983549 G A MRPS14 3'UTR 0.11 TCGA-Q1-A5R2-01 1 185260653 185260653 C T SWT1 3'UTR 0.07 TCGA-Q1-A5R2-01 1 202287768 202287768 C A LGR6 Silent p.I779I 0.11 TCGA-Q1-A5R2-01 1 202464556 202464556 G C PPP1R12B Missense_Mutation p.E761Q 0.07 tolerated(0.44) benign(0.104) TCGA-Q1-A5R2-01 1 205280879 205280879 C T NUAK2 Silent p.E102E 0.23 TCGA-Q1-A5R2-01 1 211749083 211749083 C T SLC30A1 Missense_Mutation p.E391K 0.07 tolerated(0.49) benign(0.038) TCGA-Q1-A5R2-01 1 214557938 214557938 G A PTPN14 Silent p.I420I 0.07 TCGA-Q1-A5R2-01 1 216420458 216420458 T C USH2A Missense_Mutation p.N760D 0.12 benign(0.009) TCGA-Q1-A5R2-01 1 216679711 216679711 C T ESRRG 3'UTR 0.23 TCGA-Q1-A5R2-01 1 225707234 225707234 C T ENAH Silent p.L156L 0.42 TCGA-Q1-A5R2-01 1 228286047 228286047 C T ARF1 3'UTR 0.10 TCGA-Q1-A5R2-01 1 228456235 228456235 C T OBSCN Silent p.P1806P 0.13 TCGA-Q1-A5R2-01 1 228524810 228524810 C T OBSCN Missense_Mutation p.S6505L 0.21 probably_damaging(0.983) TCGA-Q1-A5R2-01 1 22919893 22919893 G A EPHA8 Missense_Mutation p.E464K 0.08 tolerated(0.11) benign(0.084) TCGA-Q1-A5R2-01 1 235613511 235613511 C G B3GALNT2 3'UTR 0.04 TCGA-Q1-A5R2-01 1 235922695 235922695 G A LYST Missense_Mutation p.S2153F 0.06 deleterious_low_confidence(0.02) benign(0.004) TCGA-Q1-A5R2-01 1 237666663 237666663 A G RYR2 Missense_Mutation p.E824G 0.07 benign(0.37) TCGA-Q1-A5R2-01 1 240071000 240071000 C G CHRM3 Missense_Mutation p.I83M 0.15 deleterious(0) probably_damaging(0.922) TCGA-Q1-A5R2-01 1 240072373 240072373 C A CHRM3 Missense_Mutation p.P541H 0.14 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 1 242687437 242687437 C T PLD5 Missense_Mutation p.D48N 0.09 tolerated(0.1) benign(0.245) TCGA-Q1-A5R2-01 1 244869026 244869026 G A DESI2 Missense_Mutation p.A174T 0.11 tolerated(0.55) benign(0.043) TCGA-Q1-A5R2-01 1 25072060 25072060 C A CLIC4 Missense_Mutation p.P6T 0.25 deleterious_low_confidence(0.03) benign(0.04) TCGA-Q1-A5R2-01 1 2522470 2522470 C T MMEL1 Missense_Mutation p.G767S 0.09 tolerated(0.2) probably_damaging(1) TCGA-Q1-A5R2-01 1 28203154 28203154 C T THEMIS2 Silent p.I50I 0.12 TCGA-Q1-A5R2-01 1 32681106 32681106 G C DCDC2B Missense_Mutation p.D306H 0.15 deleterious(0.04) benign(0.048) TCGA-Q1-A5R2-01 1 3638722 3638724 CGT - TP73 In_Frame_Del p.V191del 0.32 TCGA-Q1-A5R2-01 1 38274657 38274657 C T C1orf122 Missense_Mutation p.S82L 0.14 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-Q1-A5R2-01 1 38274837 38274837 C T C1orf122 3'UTR 0.21 TCGA-Q1-A5R2-01 1 39340620 39340620 G A GJA9 Missense_Mutation p.S384F 0.10 tolerated(0.55) benign(0.003) TCGA-Q1-A5R2-01 1 43395647 43395647 G A SLC2A1 Silent p.I192I 0.18 TCGA-Q1-A5R2-01 1 43917525 43917525 G C HYI Intron 0.33 TCGA-Q1-A5R2-01 1 44137494 44137494 C T KDM4A Missense_Mutation p.T561M 0.08 tolerated(0.22) benign(0) TCGA-Q1-A5R2-01 1 45810273 45810273 G A TESK2 3'UTR 0.09 TCGA-Q1-A5R2-01 1 46879284 46879284 C G FAAH 3'UTR 0.14 TCGA-Q1-A5R2-01 1 6399596 6399596 G A ACOT7 Silent p.P115P 0.17 TCGA-Q1-A5R2-01 1 68903995 68903995 C G RPE65 Missense_Mutation p.E335Q 0.10 tolerated(0.32) probably_damaging(0.956) TCGA-Q1-A5R2-01 1 76384652 76384652 C T ASB17 Silent p.L291L 0.12 TCGA-Q1-A5R2-01 1 77627018 77627018 C T PIGK Missense_Mutation p.E259K 0.11 tolerated(1) benign(0.012) TCGA-Q1-A5R2-01 1 89449631 89449631 G A RBMXL1 5'UTR 0.19 TCGA-Q1-A5R2-01 1 9794074 9794074 T C CLSTN1 Missense_Mutation p.K746R 0.18 tolerated(0.77) benign(0.005) TCGA-Q1-A5R2-01 20 17956539 17956539 G C MGME1 Missense_Mutation p.E242Q 0.15 tolerated(0.13) benign(0.345) TCGA-Q1-A5R2-01 20 18548101 18548101 C G LINC00493 RNA 0.13 TCGA-Q1-A5R2-01 20 1918250 1918250 G A SIRPA 3'UTR 0.12 TCGA-Q1-A5R2-01 20 20582352 20582352 C T RALGAPA2 Missense_Mutation p.R726K 0.09 deleterious(0.04) benign(0.416) TCGA-Q1-A5R2-01 20 22563211 22563211 G A FOXA2 Silent p.F223F 0.11 TCGA-Q1-A5R2-01 20 2955873 2955873 C T PTPRA Missense_Mutation p.S143L 0.06 tolerated(0.08) benign(0.011) TCGA-Q1-A5R2-01 20 32265318 32265318 G A E2F1 Missense_Mutation p.R252C 0.08 deleterious(0.01) possibly_damaging(0.612) TCGA-Q1-A5R2-01 20 42815123 42815123 C G JPH2 Missense_Mutation p.E75Q 0.29 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 20 43353476 43353476 C T WISP2 Silent p.D125D 0.05 TCGA-Q1-A5R2-01 20 44580951 44580951 C T ZNF335 Silent p.P1008P 0.11 TCGA-Q1-A5R2-01 20 47258742 47258742 C G PREX1 Missense_Mutation p.E1247Q 0.12 tolerated(0.51) possibly_damaging(0.756) TCGA-Q1-A5R2-01 20 47611012 47611012 G A ARFGEF2 Missense_Mutation p.E1000K 0.38 deleterious(0) probably_damaging(0.98) TCGA-Q1-A5R2-01 20 5556600 5556600 G A GPCPD1 Nonsense_Mutation p.Q244* 0.06 TCGA-Q1-A5R2-01 20 58520895 58520895 C G FAM217B 3'UTR 0.18 TCGA-Q1-A5R2-01 20 61461720 61461720 C T COL9A3 Silent p.L390L 0.09 TCGA-Q1-A5R2-01 20 61512312 61512312 C T DIDO1 Missense_Mutation p.G1666S 0.11 benign(0.001) TCGA-Q1-A5R2-01 20 62421495 62421495 C T ZBTB46 Missense_Mutation p.D206N 0.09 tolerated(0.07) benign(0.005) TCGA-Q1-A5R2-01 20 62500685 62500685 C T TPD52L2 Missense_Mutation p.S19F 0.05 deleterious(0.02) possibly_damaging(0.629) TCGA-Q1-A5R2-01 21 31965366 31965366 C G KRTAP6-3 3'UTR 0.20 TCGA-Q1-A5R2-01 21 33825705 33825705 G A EVA1C Silent p.T82T 0.05 TCGA-Q1-A5R2-01 21 38460535 38460535 C T TTC3 Missense_Mutation p.S76F 0.13 deleterious(0.02) benign(0.372) TCGA-Q1-A5R2-01 21 45012110 45012110 C T HSF2BP Silent p.L264L 0.15 TCGA-Q1-A5R2-01 21 45389047 45389047 G A AGPAT3 Missense_Mutation p.G133S 0.09 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 21 45947348 45947348 C G TSPEAR Missense_Mutation p.E326Q 0.10 deleterious(0.01) probably_damaging(0.917) TCGA-Q1-A5R2-01 21 47975972 47975972 G A DIP2A Missense_Mutation p.V1156M 0.10 deleterious(0) possibly_damaging(0.889) TCGA-Q1-A5R2-01 22 20780191 20780191 G T SCARF2 Missense_Mutation p.A696E 0.10 tolerated(0.31) possibly_damaging(0.826) TCGA-Q1-A5R2-01 22 23029658 23029658 C A IGLV3-25 Missense_Mutation p.T87K 0.09 tolerated(0.14) benign(0.008) TCGA-Q1-A5R2-01 22 30414060 30414060 C T MTMR3 Missense_Mutation p.R607W 0.15 deleterious(0) probably_damaging(0.997) TCGA-Q1-A5R2-01 22 31521299 31521299 G T INPP5J Intron 0.21 TCGA-Q1-A5R2-01 22 31523888 31523888 G T INPP5J Intron 0.29 TCGA-Q1-A5R2-01 22 32914295 32914295 G A SYN3 Nonsense_Mutation p.Q449* 0.19 TCGA-Q1-A5R2-01 22 39215846 39215846 G A NPTXR 3'UTR 0.23 TCGA-Q1-A5R2-01 22 42609826 42609826 C G TCF20 Missense_Mutation p.D496H 0.24 probably_damaging(0.999) TCGA-Q1-A5R2-01 2 101009777 101009777 C T CHST10 Missense_Mutation p.R334H 0.09 deleterious(0.01) benign(0.052) TCGA-Q1-A5R2-01 2 102483733 102483733 G A MAP4K4 Missense_Mutation p.E728K 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.813) TCGA-Q1-A5R2-01 2 105654622 105654622 C T MRPS9 Silent p.L24L 0.11 TCGA-Q1-A5R2-01 2 108487671 108487671 G A RGPD4 Missense_Mutation p.D1071N 0.04 deleterious(0.04) probably_damaging(1) TCGA-Q1-A5R2-01 2 109380099 109380099 C G RANBP2 Nonsense_Mutation p.S1035* 0.11 TCGA-Q1-A5R2-01 2 112622467 112622467 G C ANAPC1 Silent p.L249L 0.05 TCGA-Q1-A5R2-01 2 113067694 113067694 C G ZC3H6 Missense_Mutation p.S190C 0.17 tolerated(0.14) benign(0.073) TCGA-Q1-A5R2-01 2 128930264 128930264 G C UGGT1 Missense_Mutation p.L1074F 0.08 deleterious(0) probably_damaging(0.952) TCGA-Q1-A5R2-01 2 131807361 131807361 C T FAM168B 3'UTR 0.15 TCGA-Q1-A5R2-01 2 131976377 131976377 C T POTEE Silent p.H134H 0.18 TCGA-Q1-A5R2-01 2 136546109 136546109 C T LCT Missense_Mutation p.G1857R 0.11 tolerated(0.51) benign(0.042) TCGA-Q1-A5R2-01 2 141643896 141643896 C T LRP1B Missense_Mutation p.E1259K 0.12 benign(0.292) TCGA-Q1-A5R2-01 2 151331453 151331453 G A RND3 Missense_Mutation p.S95L 0.10 deleterious(0.04) possibly_damaging(0.533) TCGA-Q1-A5R2-01 2 15415776 15415776 C T NBAS Silent p.Q1852Q 0.11 TCGA-Q1-A5R2-01 2 1544402 1544402 G A TPO Silent p.S885S 0.20 TCGA-Q1-A5R2-01 2 162275534 162275534 C T TBR1 Silent p.I367I 0.14 TCGA-Q1-A5R2-01 2 167055975 167055975 G A SCN9A Missense_Mutation p.S1714L 0.13 deleterious(0.05) benign(0.037) TCGA-Q1-A5R2-01 2 170066032 170066032 G C LRP2 Missense_Mutation p.L2134V 0.11 benign(0.071) TCGA-Q1-A5R2-01 2 174086238 174086238 G T MLTK Intron 0.14 TCGA-Q1-A5R2-01 2 175265809 175265809 G C SCRN3 Missense_Mutation p.E145Q 0.13 deleterious(0.02) probably_damaging(0.951) TCGA-Q1-A5R2-01 2 178098801 178098801 C G NFE2L2 Missense_Mutation p.E82Q 0.07 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 2 178416753 178416753 G C TTC30B Missense_Mutation p.Q247E 0.09 tolerated(1) benign(0) TCGA-Q1-A5R2-01 2 178682599 178682599 G C PDE11A Missense_Mutation p.Q544E 0.12 tolerated(1) probably_damaging(0.926) TCGA-Q1-A5R2-01 2 179427879 179427879 T C TTN Silent p.L27660L 0.38 TCGA-Q1-A5R2-01 2 179486421 179486421 C T TTN Missense_Mutation p.E15044K 0.24 TCGA-Q1-A5R2-01 2 182400201 182400201 G C ITGA4 Missense_Mutation p.E1016Q 0.34 tolerated(0.11) benign(0.045) TCGA-Q1-A5R2-01 2 182761667 182761667 G C SSFA2 Missense_Mutation p.D114H 0.06 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 2 190592600 190592600 C G ANKAR Missense_Mutation p.S885C 0.38 deleterious(0.01) possibly_damaging(0.67) TCGA-Q1-A5R2-01 2 197700524 197700524 C G PGAP1 3'UTR 0.09 TCGA-Q1-A5R2-01 2 202900552 202900552 C T FZD7 Silent p.I394I 0.07 TCGA-Q1-A5R2-01 2 204074025 204074025 G A NBEAL1 Missense_Mutation p.E2560K 0.13 tolerated(0.21) probably_damaging(0.998) TCGA-Q1-A5R2-01 2 209030457 209030457 G A C2orf80 3'UTR 0.08 TCGA-Q1-A5R2-01 2 215796284 215796284 G C ABCA12 3'UTR 0.14 TCGA-Q1-A5R2-01 2 217724644 217724644 C G TNP1 Silent p.L38L 0.06 TCGA-Q1-A5R2-01 2 218668283 218668283 C T TNS1 3'UTR 0.14 TCGA-Q1-A5R2-01 2 219870775 219870775 G C CCDC108 Missense_Mutation p.F1630L 0.20 deleterious(0) possibly_damaging(0.668) TCGA-Q1-A5R2-01 2 220088626 220088626 G A ATG9A Missense_Mutation p.R462W 0.10 deleterious(0) probably_damaging(0.937) TCGA-Q1-A5R2-01 2 223158986 223158986 G A PAX3 Silent p.F162F 0.11 TCGA-Q1-A5R2-01 2 232645809 232645809 C G PDE6D Missense_Mutation p.E6Q 0.33 tolerated(0.41) benign(0.001) TCGA-Q1-A5R2-01 2 238275692 238275692 C T COL6A3 Missense_Mutation p.G1713E 0.27 probably_damaging(1) TCGA-Q1-A5R2-01 2 241517259 241517259 G A RNPEPL1 Missense_Mutation p.E479K 0.12 tolerated_low_confidence(0.42) benign(0) TCGA-Q1-A5R2-01 2 242170305 242170305 C T HDLBP Missense_Mutation p.D1115N 0.25 deleterious(0.04) benign(0.247) TCGA-Q1-A5R2-01 2 242619641 242619641 C G DTYMK Intron 0.16 TCGA-Q1-A5R2-01 2 26537564 26537564 C T GPR113 Intron 0.18 TCGA-Q1-A5R2-01 2 26663323 26663323 G C DRC1 Silent p.V322V 0.08 TCGA-Q1-A5R2-01 2 37480275 37480275 C T PRKD3 3'UTR 0.06 TCGA-Q1-A5R2-01 2 38893461 38893461 C G GALM Missense_Mutation p.S53W 0.30 deleterious(0.01) probably_damaging(0.911) TCGA-Q1-A5R2-01 2 39222290 39222290 G A SOS1 Missense_Mutation p.S1107F 0.07 tolerated(0.09) possibly_damaging(0.521) TCGA-Q1-A5R2-01 2 43453424 43453424 C T ZFP36L2 Missense_Mutation p.D11N 0.08 tolerated(0.12) benign(0.362) TCGA-Q1-A5R2-01 2 54091870 54091870 G C PSME4 3'UTR 0.13 TCGA-Q1-A5R2-01 2 54092330 54092330 G C PSME4 3'UTR 0.10 TCGA-Q1-A5R2-01 2 55130286 55130286 C G EML6 Missense_Mutation p.S1077C 0.18 deleterious(0.01) possibly_damaging(0.765) TCGA-Q1-A5R2-01 2 70408572 70408572 C T C2orf42 Silent p.Q182Q 0.23 TCGA-Q1-A5R2-01 2 70409047 70409047 C T C2orf42 Missense_Mutation p.G24E 0.10 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 2 71160168 71160168 C T VAX2 Missense_Mutation p.S236L 0.13 tolerated(0.07) benign(0.005) TCGA-Q1-A5R2-01 2 71371643 71371643 C T MPHOSPH10 Missense_Mutation p.S511L 0.14 deleterious(0.01) probably_damaging(0.982) TCGA-Q1-A5R2-01 2 73456686 73456686 C T PRADC1 Missense_Mutation p.E61K 0.18 tolerated(0.34) benign(0.061) TCGA-Q1-A5R2-01 2 73520479 73520479 C T EGR4 Silent p.A92A 0.12 TCGA-Q1-A5R2-01 2 74726617 74726617 G A LBX2 Intron 0.12 TCGA-Q1-A5R2-01 2 85838793 85838793 C T C2orf68 Missense_Mutation p.R75Q 0.09 tolerated(0.11) benign(0.115) TCGA-Q1-A5R2-01 2 86090562 86090562 C T ST3GAL5 Silent p.S43S 0.07 TCGA-Q1-A5R2-01 2 8997286 8997286 G C MBOAT2 3'UTR 0.16 TCGA-Q1-A5R2-01 2 98928686 98928686 G A VWA3B Silent p.A1253A 0.14 TCGA-Q1-A5R2-01 3 108366903 108366903 G T DZIP3 Missense_Mutation p.D636Y 0.15 deleterious_low_confidence(0) possibly_damaging(0.815) TCGA-Q1-A5R2-01 3 119133187 119133187 C T ARHGAP31 Missense_Mutation p.P804L 0.37 tolerated(0.17) benign(0.027) TCGA-Q1-A5R2-01 3 122447328 122447328 C G PARP14 Missense_Mutation p.Q1764E 0.09 tolerated(0.56) benign(0.011) TCGA-Q1-A5R2-01 3 122865005 122865005 C T PDIA5 Silent p.F347F 0.16 TCGA-Q1-A5R2-01 3 126754623 126754623 C T PLXNA1 3'UTR 0.23 TCGA-Q1-A5R2-01 3 132379517 132379517 G A UBA5 Missense_Mutation p.E46K 0.07 deleterious(0.01) benign(0.136) TCGA-Q1-A5R2-01 3 133347312 133347312 C T TOPBP1 Missense_Mutation p.E900K 0.07 tolerated(0.15) benign(0.057) TCGA-Q1-A5R2-01 3 13381483 13381483 G A NUP210 Silent p.I1114I 0.11 TCGA-Q1-A5R2-01 3 136574114 136574114 C T SLC35G2 Missense_Mutation p.S271L 0.08 tolerated(0.05) possibly_damaging(0.582) TCGA-Q1-A5R2-01 3 136574285 136574285 C T SLC35G2 Missense_Mutation p.S328F 0.09 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 3 143082369 143082369 C G SLC9A9 Missense_Mutation p.E521Q 0.10 deleterious(0.02) possibly_damaging(0.697) TCGA-Q1-A5R2-01 3 149683972 149683972 C G PFN2 3'UTR 0.08 TCGA-Q1-A5R2-01 3 157146155 157146155 G A VEPH1 Silent p.L218L 0.07 TCGA-Q1-A5R2-01 3 164785147 164785148 - A SI Frame_Shift_Ins p.K206* 0.08 TCGA-Q1-A5R2-01 3 168845811 168845811 G C MECOM Silent p.L93L 0.07 TCGA-Q1-A5R2-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.07 tolerated(0.36) benign(0.4) TCGA-Q1-A5R2-01 3 179474891 179474891 C T USP13 Intron 0.05 TCGA-Q1-A5R2-01 3 183951051 183951051 G C VWA5B2 Silent p.V132V 0.09 TCGA-Q1-A5R2-01 3 183956545 183956545 G A VWA5B2 Missense_Mutation p.E696K 0.11 deleterious(0.03) benign(0.001) TCGA-Q1-A5R2-01 3 184025268 184025268 G C PSMD2 Missense_Mutation p.E720Q 0.07 tolerated(0.11) probably_damaging(0.969) TCGA-Q1-A5R2-01 3 185229347 185229347 G C LIPH Silent p.L411L 0.10 TCGA-Q1-A5R2-01 3 189590660 189590660 G A TP63 Missense_Mutation p.E409K 0.07 deleterious(0) probably_damaging(0.997) TCGA-Q1-A5R2-01 3 190338140 190338140 C G IL1RAP Nonsense_Mutation p.S205* 0.07 TCGA-Q1-A5R2-01 3 191179132 191179132 A G PYDC2 Missense_Mutation p.S61G 0.07 tolerated(0.15) benign(0.372) TCGA-Q1-A5R2-01 3 195506548 195506548 G C MUC4 Missense_Mutation p.S3968C 0.07 probably_damaging(0.942) TCGA-Q1-A5R2-01 3 196544981 196544981 C G PAK2 Missense_Mutation p.I369M 0.06 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 3 37034434 37034434 G A EPM2AIP1 Silent p.L45L 0.07 TCGA-Q1-A5R2-01 3 42245409 42245409 C G TRAK1 Intron 0.62 TCGA-Q1-A5R2-01 3 42687388 42687388 G C NKTR Missense_Mutation p.R1437T 0.22 deleterious_low_confidence(0) unknown(0) TCGA-Q1-A5R2-01 3 43074915 43074915 C G FAM198A Missense_Mutation p.S387C 0.21 deleterious(0) probably_damaging(0.997) TCGA-Q1-A5R2-01 3 46751247 46751247 G T TMIE 3'UTR 0.12 TCGA-Q1-A5R2-01 3 49020916 49020916 C G ARIH2 3'UTR 0.15 TCGA-Q1-A5R2-01 3 49569062 49569062 G A DAG1 Missense_Mutation p.R373Q 0.12 deleterious(0.04) probably_damaging(0.914) TCGA-Q1-A5R2-01 3 49765613 49765613 C T IP6K1 Missense_Mutation p.E239K 0.17 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 3 52719979 52719979 G A GNL3 5'UTR 0.19 TCGA-Q1-A5R2-01 3 57542130 57542130 C A PDE12 Silent p.R8R 0.29 TCGA-Q1-A5R2-01 3 8675369 8675369 G A SSUH2 Missense_Mutation p.R108W 0.16 deleterious(0.02) benign(0.041) TCGA-Q1-A5R2-01 3 8794225 8794225 G A OXTR 3'UTR 0.14 TCGA-Q1-A5R2-01 3 9422213 9422213 C T THUMPD3 Silent p.F345F 0.31 TCGA-Q1-A5R2-01 3 97663665 97663665 G C MINA 3'UTR 0.14 TCGA-Q1-A5R2-01 3 97868514 97868514 T A OR5H14 Silent p.S95S 0.03 TCGA-Q1-A5R2-01 4 106604362 106604362 G C INTS12 Nonsense_Mutation p.S306* 0.13 TCGA-Q1-A5R2-01 4 113184201 113184201 C T AP1AR Missense_Mutation p.R114C 0.16 deleterious(0) probably_damaging(0.997) TCGA-Q1-A5R2-01 4 122301714 122301714 C T QRFPR Missense_Mutation p.R30Q 0.25 tolerated(0.24) benign(0.001) TCGA-Q1-A5R2-01 4 122681299 122681299 G A TMEM155 3'UTR 0.20 TCGA-Q1-A5R2-01 4 142653915 142653915 G C IL15 Missense_Mutation p.E135Q 0.14 tolerated(0.31) benign(0.078) TCGA-Q1-A5R2-01 4 152609907 152609907 G C PET112 Silent p.V402V 0.15 TCGA-Q1-A5R2-01 4 157684185 157684185 A G PDGFC 3'UTR 0.27 TCGA-Q1-A5R2-01 4 17616338 17616338 C T MED28 Missense_Mutation p.P21S 0.08 tolerated_low_confidence(0.15) benign(0.002) TCGA-Q1-A5R2-01 4 187192782 187192782 G A F11 Silent p.L25L 0.07 TCGA-Q1-A5R2-01 4 187554840 187554840 G A FAT1 Nonsense_Mutation p.Q1441* 0.06 TCGA-Q1-A5R2-01 4 189022246 189022246 G A TRIML2 Silent p.A98A 0.24 TCGA-Q1-A5R2-01 4 189022289 189022289 A G TRIML2 Missense_Mutation p.L84S 0.25 tolerated(0.18) benign(0.012) TCGA-Q1-A5R2-01 4 20620402 20620402 C G SLIT2 Missense_Mutation p.R1454G 0.14 deleterious(0.04) benign(0.274) TCGA-Q1-A5R2-01 4 22394253 22394253 G A GPR125 Nonsense_Mutation p.R848* 0.05 TCGA-Q1-A5R2-01 4 3446606 3446606 C T HGFAC Missense_Mutation p.S301L 0.07 deleterious(0.04) benign(0.018) TCGA-Q1-A5R2-01 4 41683071 41683071 A G LIMCH1 Missense_Mutation p.T854A 0.15 tolerated(0.14) benign(0.003) TCGA-Q1-A5R2-01 4 46929443 46929444 - T GABRA4 3'UTR 0.18 TCGA-Q1-A5R2-01 4 85591659 85591659 C T WDFY3 3'UTR 0.19 TCGA-Q1-A5R2-01 4 887749 887749 C T GAK Missense_Mutation p.E264K 0.13 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 5 114604673 114604673 G A CCDC112 Missense_Mutation p.P485S 0.06 deleterious(0.02) benign(0.351) TCGA-Q1-A5R2-01 5 115783169 115783169 C A SEMA6A Missense_Mutation p.A745S 0.06 tolerated(0.64) probably_damaging(0.997) TCGA-Q1-A5R2-01 5 140263838 140263838 C T PCDHA13 Missense_Mutation p.T662M 0.09 deleterious_low_confidence(0.03) probably_damaging(0.946) TCGA-Q1-A5R2-01 5 140559292 140559292 G A PCDHB8 Silent p.S559S 0.06 TCGA-Q1-A5R2-01 5 140720894 140720894 G C PCDHGA2 Missense_Mutation p.E786Q 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-Q1-A5R2-01 5 145862183 145862183 G A TCERG1 Missense_Mutation p.E639K 0.12 tolerated(0.43) unknown(0) TCGA-Q1-A5R2-01 5 146703593 146703593 C A STK32A Silent p.V131V 0.15 TCGA-Q1-A5R2-01 5 149676778 149676778 C G ARSI Nonstop_Mutation p.*570Sext*43 0.09 TCGA-Q1-A5R2-01 5 149737302 149737302 T G TCOF1 5'Flank 0.25 TCGA-Q1-A5R2-01 5 150868895 150868895 C T SLC36A1 3'UTR 0.21 TCGA-Q1-A5R2-01 5 154195724 154195724 G A LARP1 3'UTR 0.19 TCGA-Q1-A5R2-01 5 16701426 16701426 G A MYO10 Silent p.S1026S 0.11 TCGA-Q1-A5R2-01 5 172341859 172341859 C T ERGIC1 Intron 0.21 TCGA-Q1-A5R2-01 5 176798942 176798942 G C RGS14 Missense_Mutation p.E523Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 5 176939844 176939844 C T DDX41 Missense_Mutation p.D446N 0.20 deleterious(0.01) probably_damaging(0.949) TCGA-Q1-A5R2-01 5 179041949 179041949 C T HNRNPH1 3'UTR 0.24 TCGA-Q1-A5R2-01 5 21752031 21752031 C T CDH12 Missense_Mutation p.D734N 0.06 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 5 31267528 31267528 G A CDH6 5'UTR 0.17 TCGA-Q1-A5R2-01 5 32791003 32791003 G C NPR3 3'UTR 0.07 TCGA-Q1-A5R2-01 5 3599746 3599746 C T IRX1 Silent p.I228I 0.12 TCGA-Q1-A5R2-01 5 43039876 43039876 G A ANXA2R Silent p.F91F 0.07 TCGA-Q1-A5R2-01 5 55395966 55395966 G C ANKRD55 3'UTR 0.17 TCGA-Q1-A5R2-01 5 65475232 65475232 C T SREK1 3'UTR 0.06 TCGA-Q1-A5R2-01 5 68524024 68524024 C G MRPS36 Intron 0.24 TCGA-Q1-A5R2-01 5 74323619 74323619 C T GCNT4 3'UTR 0.14 TCGA-Q1-A5R2-01 5 74450127 74450127 C T ANKRD31 Missense_Mutation p.R584K 0.10 tolerated(0.36) benign(0.061) TCGA-Q1-A5R2-01 5 89854634 89854634 C T GPR98 5'UTR 0.05 TCGA-Q1-A5R2-01 5 90016875 90016875 G A GPR98 Missense_Mutation p.M3249I 0.13 benign(0.107) TCGA-Q1-A5R2-01 6 11190945 11190945 G A NEDD9 Missense_Mutation p.S386F 0.09 deleterious(0.02) benign(0.158) TCGA-Q1-A5R2-01 6 117650503 117650503 G A ROS1 Silent p.I1785I 0.25 TCGA-Q1-A5R2-01 6 131161422 131161422 C T EPB41L2 3'UTR 0.23 TCGA-Q1-A5R2-01 6 150016267 150016267 G A LATS1 Nonsense_Mutation p.R147* 0.16 TCGA-Q1-A5R2-01 6 15468829 15468829 G A JARID2 Missense_Mutation p.E184K 0.15 tolerated(0.06) benign(0.031) TCGA-Q1-A5R2-01 6 25972171 25972171 G A TRIM38 Silent p.E194E 0.19 TCGA-Q1-A5R2-01 6 26056673 26056673 T C HIST1H1C 5'UTR 0.13 TCGA-Q1-A5R2-01 6 28829679 28829679 C A XXbac-BPG308K3.6 RNA 0.44 TCGA-Q1-A5R2-01 6 30594695 30594695 C T ATAT1 5'UTR 0.09 TCGA-Q1-A5R2-01 6 30612374 30612374 C G ATAT1 Intron 0.08 TCGA-Q1-A5R2-01 6 30640792 30640792 G A DHX16 5'UTR 0.13 TCGA-Q1-A5R2-01 6 3154874 3154874 G A TUBB2A Silent p.L187L 0.10 TCGA-Q1-A5R2-01 6 32178591 32178591 C T NOTCH4 Missense_Mutation p.E935K 0.12 tolerated(0.38) possibly_damaging(0.582) TCGA-Q1-A5R2-01 6 37448841 37448841 G A CMTR1 3'UTR 0.21 TCGA-Q1-A5R2-01 6 405040 405040 C T IRF4 Silent p.H374H 0.10 TCGA-Q1-A5R2-01 6 4128056 4128056 C G ECI2 Missense_Mutation p.E171Q 0.17 tolerated(0.09) possibly_damaging(0.456) TCGA-Q1-A5R2-01 6 43534910 43534910 C T XPO5 Missense_Mutation p.R277K 0.17 tolerated(0.11) possibly_damaging(0.638) TCGA-Q1-A5R2-01 6 56471441 56471441 G C DST Intron 0.37 TCGA-Q1-A5R2-01 6 65300584 65300584 C T EYS Missense_Mutation p.E1726K 0.05 tolerated_low_confidence(0.37) benign(0.001) TCGA-Q1-A5R2-01 6 70037774 70037774 G A BAI3 Missense_Mutation p.D1010N 0.11 tolerated(0.24) benign(0.023) TCGA-Q1-A5R2-01 6 88265133 88265133 C T RARS2 Missense_Mutation p.E130K 0.24 deleterious(0) probably_damaging(0.933) TCGA-Q1-A5R2-01 6 88265183 88265183 C T RARS2 Missense_Mutation p.G113E 0.18 deleterious(0) probably_damaging(0.989) TCGA-Q1-A5R2-01 7 100463436 100463436 G A SLC12A9 Missense_Mutation p.D652N 0.14 tolerated(0.46) benign(0.001) TCGA-Q1-A5R2-01 7 104546811 104546811 T G LHFPL3 3'UTR 0.28 TCGA-Q1-A5R2-01 7 107823359 107823359 C G NRCAM Missense_Mutation p.L770F 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-Q1-A5R2-01 7 111449381 111449381 G A DOCK4 Missense_Mutation p.S1028F 0.23 deleterious(0) benign(0.342) TCGA-Q1-A5R2-01 7 124475408 124475408 C T POT1 Missense_Mutation p.R477K 0.11 tolerated(0.68) benign(0.001) TCGA-Q1-A5R2-01 7 127222266 127222266 G A GCC1 Silent p.I710I 0.23 TCGA-Q1-A5R2-01 7 139717537 139717537 G A TBXAS1 Silent p.R524R 0.12 TCGA-Q1-A5R2-01 7 151860728 151860728 G A KMT2C Nonsense_Mutation p.Q3312* 0.14 TCGA-Q1-A5R2-01 7 151878044 151878044 G A KMT2C Nonsense_Mutation p.Q2301* 0.07 TCGA-Q1-A5R2-01 7 1535091 1535091 C T INTS1 Missense_Mutation p.A604T 0.15 tolerated(0.1) benign(0.001) TCGA-Q1-A5R2-01 7 20766758 20766758 A C ABCB5 Missense_Mutation p.Q907H 0.27 deleterious(0) possibly_damaging(0.905) TCGA-Q1-A5R2-01 7 34125571 34125571 C T BMPER Nonsense_Mutation p.Q538* 0.18 TCGA-Q1-A5R2-01 7 36320808 36320808 G A EEPD1 Missense_Mutation p.E339K 0.11 deleterious(0.02) benign(0.056) TCGA-Q1-A5R2-01 7 38393568 38393568 C G TRGV4 Silent p.G34G 0.08 TCGA-Q1-A5R2-01 7 44104528 44104528 G A PGAM2 Silent p.F166F 0.21 TCGA-Q1-A5R2-01 7 56147257 56147257 C T SUMF2 Missense_Mutation p.S257L 0.16 tolerated_low_confidence(0.06) benign(0) TCGA-Q1-A5R2-01 7 64349941 64349941 G A RP11-797H7.5 RNA 0.07 TCGA-Q1-A5R2-01 7 75677414 75677414 C T MDH2 5'UTR 0.12 TCGA-Q1-A5R2-01 7 80087990 80087990 G C GNAT3 Missense_Mutation p.F354L 0.19 tolerated(0.53) possibly_damaging(0.794) TCGA-Q1-A5R2-01 7 82595165 82595165 T C PCLO Silent p.T1313T 0.06 TCGA-Q1-A5R2-01 7 87190668 87190668 C T ABCB1 Silent p.A246A 0.12 TCGA-Q1-A5R2-01 7 90012327 90012327 A G GTPBP10 Missense_Mutation p.K279E 0.21 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 7 92085731 92085737 TTTGTCA - GATAD1 Frame_Shift_Del p.C223Hfs*35 0.40 TCGA-Q1-A5R2-01 7 93515947 93515947 C G TFPI2 3'UTR 0.21 TCGA-Q1-A5R2-01 7 94180647 94180647 C T CASD1 Intron 0.15 TCGA-Q1-A5R2-01 7 99794897 99794897 G C STAG3 Missense_Mutation p.D354H 0.04 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 8 101300374 101300374 G C RNF19A Missense_Mutation p.S10C 0.15 tolerated_low_confidence(0.14) benign(0.018) TCGA-Q1-A5R2-01 8 10584120 10584120 C T SOX7 Missense_Mutation p.E151K 0.09 deleterious(0) probably_damaging(0.997) TCGA-Q1-A5R2-01 8 109260870 109260870 G A EIF3E Missense_Mutation p.P21L 0.07 deleterious(0) possibly_damaging(0.831) TCGA-Q1-A5R2-01 8 125487449 125487449 C T RNF139 Silent p.I33I 0.07 TCGA-Q1-A5R2-01 8 125487452 125487452 C T RNF139 Silent p.I34I 0.06 TCGA-Q1-A5R2-01 8 131861929 131861929 C G ADCY8 Missense_Mutation p.W777C 0.22 deleterious(0) benign(0) TCGA-Q1-A5R2-01 8 133898695 133898695 G A TG Missense_Mutation p.E360K 0.21 tolerated(0.26) benign(0.007) TCGA-Q1-A5R2-01 8 144695762 144695762 C T TSTA3 Missense_Mutation p.D248N 0.09 tolerated(0.07) benign(0.024) TCGA-Q1-A5R2-01 8 145947320 145947320 G C ZNF251 Missense_Mutation p.F575L 0.07 deleterious(0.02) benign(0.153) TCGA-Q1-A5R2-01 8 1951514 1951514 C T KBTBD11 3'UTR 0.10 TCGA-Q1-A5R2-01 8 20107053 20107053 G C LZTS1 3'UTR 0.16 TCGA-Q1-A5R2-01 8 22021393 22021393 C T SFTPC Intron 0.15 TCGA-Q1-A5R2-01 8 25220601 25220601 G C DOCK5 Silent p.L996L 0.12 TCGA-Q1-A5R2-01 8 27310671 27310671 C T PTK2B Silent p.G863G 0.08 TCGA-Q1-A5R2-01 8 39068725 39068725 C G ADAM32 Nonsense_Mutation p.S372* 0.08 TCGA-Q1-A5R2-01 8 42821733 42821733 G C HOOK3 Silent p.L299L 0.12 TCGA-Q1-A5R2-01 8 52384809 52384809 G A PXDNL Silent p.T250T 0.16 TCGA-Q1-A5R2-01 8 56015667 56015667 G A XKR4 Missense_Mutation p.A207T 0.12 tolerated(0.24) benign(0.174) TCGA-Q1-A5R2-01 8 59060621 59060621 C G FAM110B 3'UTR 0.06 TCGA-Q1-A5R2-01 8 61654065 61654065 G A CHD7 Missense_Mutation p.G25E 0.22 probably_damaging(0.931) TCGA-Q1-A5R2-01 8 66619462 66619462 G A MTFR1 Missense_Mutation p.M245I 0.20 tolerated(0.18) benign(0.042) TCGA-Q1-A5R2-01 8 68102956 68102956 C T CSPP1 Missense_Mutation p.R1093W 0.26 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 8 73979371 73979371 G C SBSPON 3'UTR 0.16 TCGA-Q1-A5R2-01 8 85096121 85096121 T C RALYL 5'Flank 0.25 TCGA-Q1-A5R2-01 8 93026941 93026941 G A RUNX1T1 Nonsense_Mutation p.Q123* 0.18 TCGA-Q1-A5R2-01 8 9590931 9590931 G C TNKS Missense_Mutation p.E764Q 0.05 tolerated(0.08) probably_damaging(0.956) TCGA-Q1-A5R2-01 9 100092954 100092954 G C CCDC180 Missense_Mutation p.D771H 0.07 deleterious(0.01) benign(0.013) TCGA-Q1-A5R2-01 9 112898781 112898781 C T PALM2-AKAP2 Silent p.G319G 0.10 TCGA-Q1-A5R2-01 9 115759798 115759798 G A ZNF883 RNA 0.21 TCGA-Q1-A5R2-01 9 125642499 125642499 C G RC3H2 Intron 0.13 TCGA-Q1-A5R2-01 9 130164919 130164919 G A SLC2A8 Missense_Mutation p.E204K 0.17 deleterious(0.02) probably_damaging(1) TCGA-Q1-A5R2-01 9 131079472 131079472 C T TRUB2 Missense_Mutation p.G92D 0.17 deleterious(0.01) probably_damaging(0.956) TCGA-Q1-A5R2-01 9 131833307 131833307 G A FAM73B 3'UTR 0.33 TCGA-Q1-A5R2-01 9 133271684 133271684 G A AL354898.1 5'Flank 0.20 TCGA-Q1-A5R2-01 9 133305894 133305894 C T HMCN2 Silent p.H560H 0.11 TCGA-Q1-A5R2-01 9 135357739 135357739 G C C9orf171 Missense_Mutation p.D80H 0.16 tolerated_low_confidence(0.54) benign(0) TCGA-Q1-A5R2-01 9 135975587 135975587 C T RALGDS Intron 0.17 TCGA-Q1-A5R2-01 9 135984132 135984132 C T RALGDS Missense_Mutation p.D236N 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-Q1-A5R2-01 9 138742233 138742233 C G CAMSAP1 Missense_Mutation p.E295Q 0.11 deleterious(0.03) benign(0.12) TCGA-Q1-A5R2-01 9 139257548 139257548 G C DNLZ Silent p.S87S 0.13 TCGA-Q1-A5R2-01 9 139402806 139402806 C T NOTCH1 Missense_Mutation p.C1068Y 0.14 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 9 140033986 140033986 C T GRIN1 Silent p.S16S 0.29 TCGA-Q1-A5R2-01 9 140196233 140196233 C T NRARP Missense_Mutation p.E50K 0.12 deleterious(0.02) probably_damaging(0.974) TCGA-Q1-A5R2-01 9 140196260 140196260 C G NRARP Missense_Mutation p.E41Q 0.18 deleterious(0.03) probably_damaging(0.99) TCGA-Q1-A5R2-01 9 14087500 14087500 G C NFIB 3'Flank 0.14 TCGA-Q1-A5R2-01 9 14120470 14120470 G C NFIB Missense_Mutation p.S405C 0.06 tolerated(0.38) possibly_damaging(0.754) TCGA-Q1-A5R2-01 9 214656 214656 C T C9orf66 Silent p.P247P 0.40 TCGA-Q1-A5R2-01 9 33922521 33922521 G A UBAP2 Missense_Mutation p.S1114F 0.29 deleterious(0) unknown(0) TCGA-Q1-A5R2-01 9 34724748 34724748 G A FAM205A Missense_Mutation p.S830L 0.13 tolerated(0.05) benign(0.093) TCGA-Q1-A5R2-01 9 34993268 34993268 C T DNAJB5 Missense_Mutation p.S127L 0.24 deleterious(0.01) benign(0.182) TCGA-Q1-A5R2-01 9 35740907 35740907 C T GBA2 Missense_Mutation p.R314H 0.09 tolerated(0.21) benign(0.005) TCGA-Q1-A5R2-01 9 74969816 74969816 G C ZFAND5 3'UTR 0.21 TCGA-Q1-A5R2-01 9 75545857 75545857 C T ALDH1A1 Missense_Mutation p.E84K 0.30 tolerated(0.18) possibly_damaging(0.765) TCGA-Q1-A5R2-01 9 78853949 78853949 G A PCSK5 Missense_Mutation p.E981K 0.13 tolerated(0.56) benign(0.002) TCGA-Q1-A5R2-01 9 84603757 84603757 G A SPATA31D1 Silent p.L8L 0.16 TCGA-Q1-A5R2-01 9 91616659 91616659 C T S1PR3 Missense_Mutation p.L182F 0.10 deleterious(0.02) benign(0.247) TCGA-Q1-A5R2-01 9 95477650 95477650 G A BICD2 Missense_Mutation p.A785V 0.18 deleterious(0) probably_damaging(1) TCGA-Q1-A5R2-01 9 95481751 95481751 C T BICD2 Silent p.E392E 0.21 TCGA-Q1-A5R2-01 9 95609151 95609151 C T ZNF484 Missense_Mutation p.E642K 0.15 tolerated(0.07) possibly_damaging(0.559) TCGA-Q1-A5R2-01 9 95888903 95888903 C T NINJ1 Nonsense_Mutation p.W31* 0.08 TCGA-Q1-A5R2-01 9 990870 990870 C T DMRT3 Silent p.R428R 0.09 TCGA-Q1-A5R2-01 X 106118074 106118074 G C TBC1D8B 3'UTR 0.33 TCGA-Q1-A5R2-01 X 106173346 106173346 G A CLDN2 3'UTR 0.05 TCGA-Q1-A5R2-01 X 106486775 106486775 G A PIH1D3 3'UTR 0.18 TCGA-Q1-A5R2-01 X 106487457 106487457 A G PIH1D3 3'UTR 0.12 TCGA-Q1-A5R2-01 X 118699143 118699143 G C CXorf56 Intron 0.09 TCGA-Q1-A5R2-01 X 123184049 123184049 G A STAG2 Missense_Mutation p.E303K 0.12 deleterious(0) probably_damaging(0.994) TCGA-Q1-A5R2-01 X 123513973 123513973 C T TENM1 3'UTR 0.07 TCGA-Q1-A5R2-01 X 12924803 12924803 T C TLR8 5'UTR 0.08 TCGA-Q1-A5R2-01 X 129505595 129505595 C T SLC25A14 Missense_Mutation p.R305W 0.06 deleterious(0.02) benign(0.262) TCGA-Q1-A5R2-01 X 132159590 132159590 C T USP26 Missense_Mutation p.E887K 0.15 tolerated(0.14) benign(0.188) TCGA-Q1-A5R2-01 X 133303739 133303739 A C MIR19B2 RNA 0.09 TCGA-Q1-A5R2-01 X 134556239 134556239 C G LINC00086 RNA 0.13 TCGA-Q1-A5R2-01 X 135631026 135631026 C T VGLL1 Missense_Mutation p.R165C 0.10 tolerated(0.25) benign(0.001) TCGA-Q1-A5R2-01 X 136649777 136649777 C G ZIC3 Missense_Mutation p.F309L 0.12 deleterious(0) benign(0.012) TCGA-Q1-A5R2-01 X 14548066 14548066 C G GLRA2 5'UTR 0.14 TCGA-Q1-A5R2-01 X 151131032 151131032 C T GABRE Silent p.L142L 0.09 TCGA-Q1-A5R2-01 X 152158680 152158680 C T PNMA5 3'UTR 0.14 TCGA-Q1-A5R2-01 X 152228387 152228387 C T PNMA3 3'UTR 0.13 TCGA-Q1-A5R2-01 X 152719932 152719932 G A HAUS7 Missense_Mutation p.S332F 0.10 deleterious(0) probably_damaging(0.931) TCGA-Q1-A5R2-01 X 153063931 153063931 C T SSR4 3'UTR 0.20 TCGA-Q1-A5R2-01 X 153577064 153577064 G A FLNA 3'UTR 0.14 TCGA-Q1-A5R2-01 X 154493665 154493665 C G RAB39B 5'UTR 0.15 TCGA-Q1-A5R2-01 X 18668573 18668573 G A CDKL5 Silent p.P947P 0.06 TCGA-Q1-A5R2-01 X 19372684 19372684 G C PDHA1 Missense_Mutation p.D234H 0.08 deleterious(0) probably_damaging(0.967) TCGA-Q1-A5R2-01 X 19560104 19560104 C T SH3KBP1 Missense_Mutation p.E611K 0.04 deleterious(0) benign(0.253) TCGA-Q1-A5R2-01 X 20082889 20082889 C G MAP7D2 Missense_Mutation p.Q55H 0.09 deleterious(0) probably_damaging(0.998) TCGA-Q1-A5R2-01 X 25022677 25022677 C G ARX 3'UTR 0.27 TCGA-Q1-A5R2-01 X 27997083 27997083 C T DCAF8L1 3'UTR 0.12 TCGA-Q1-A5R2-01 X 29417410 29417410 G A IL1RAPL1 Missense_Mutation p.E230K 0.05 tolerated(0.41) benign(0.341) TCGA-Q1-A5R2-01 X 37668873 37668873 G A CYBB Silent p.L505L 0.16 TCGA-Q1-A5R2-01 X 44971286 44971286 C T KDM6A 3'UTR 0.12 TCGA-Q1-A5R2-01 X 48844226 48844226 C T GRIPAP1 Silent p.L338L 0.07 TCGA-Q1-A5R2-01 X 51150670 51150670 C T CXorf67 Missense_Mutation p.R268C 0.28 tolerated(0.07) possibly_damaging(0.55) TCGA-Q1-A5R2-01 X 53106377 53106377 A T GPR173 Missense_Mutation p.M192L 0.07 tolerated(0.52) benign(0.004) TCGA-Q1-A5R2-01 X 54777440 54777440 C G ITIH6 Silent p.L1242L 0.09 TCGA-Q1-A5R2-01 X 54835607 54835607 C T MAGED2 Intron 0.18 TCGA-Q1-A5R2-01 X 5821630 5821630 G C NLGN4X Silent p.L363L 0.13 TCGA-Q1-A5R2-01 X 64722734 64722734 G A ZC3H12B Missense_Mutation p.R719Q 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-Q1-A5R2-01 X 69664781 69664781 C T DLG3 5'Flank 0.14 TCGA-Q1-A5R2-01 X 71359672 71359672 G A NHSL2 Silent p.T758T 0.07 TCGA-Q1-A5R2-01 X 80373935 80373935 G C HMGN5 Nonsense_Mutation p.S42* 0.08 TCGA-Q1-A5R2-01 X 84526424 84526424 A G ZNF711 Missense_Mutation p.K626E 0.09 deleterious(0) probably_damaging(0.999) TCGA-Q1-A5R2-01 X 91874327 91874327 C G PCDH11X 3'UTR 0.09 TCGA-Q1-A5R2-01 X 92966438 92966438 C T FAM133A 3'UTR 0.12 TCGA-Q1-A5R2-01 X 99597061 99597061 G C PCDH19 Missense_Mutation p.F896L 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-Q1-A5R3-01 10 104211229 104211229 C A C10orf95 5'UTR 0.32 TCGA-Q1-A5R3-01 10 134647006 134647006 C T TTC40 Missense_Mutation p.D2325N 0.33 tolerated(0.2) possibly_damaging(0.541) TCGA-Q1-A5R3-01 10 72511285 72511285 G A ADAMTS14 Missense_Mutation p.V830I 0.28 tolerated(1) benign(0.037) TCGA-Q1-A5R3-01 11 105948382 105948382 C G AASDHPPT 5'UTR 0.41 TCGA-Q1-A5R3-01 11 118377304 118377304 G T KMT2A Missense_Mutation p.S3566I 0.35 possibly_damaging(0.642) TCGA-Q1-A5R3-01 11 89534148 89534148 T C TRIM49 Silent p.G249G 0.23 TCGA-Q1-A5R3-01 11 94759051 94759051 G T KDM4E Silent p.P110P 0.15 TCGA-Q1-A5R3-01 12 113403614 113403614 C T OAS3 Silent p.L823L 0.29 TCGA-Q1-A5R3-01 12 132405693 132405693 G A ULK1 Missense_Mutation p.V1004I 0.24 tolerated(0.18) possibly_damaging(0.576) TCGA-Q1-A5R3-01 12 13714751 13714752 - T GRIN2B 3'UTR 0.66 TCGA-Q1-A5R3-01 12 70048548 70048548 C T BEST3 3'UTR 0.55 TCGA-Q1-A5R3-01 13 61987573 61987573 T C PCDH20 Missense_Mutation p.E220G 0.32 deleterious(0) probably_damaging(1) TCGA-Q1-A5R3-01 13 61987574 61987574 C A PCDH20 Nonsense_Mutation p.E220* 0.31 TCGA-Q1-A5R3-01 13 93879303 93879303 C T GPC6 5'UTR 0.32 TCGA-Q1-A5R3-01 13 97995334 97995334 C T MBNL2 Missense_Mutation p.A135V 0.24 tolerated(0.44) benign(0.252) TCGA-Q1-A5R3-01 14 105477153 105477154 - T CDCA4 3'UTR 0.19 TCGA-Q1-A5R3-01 14 53112958 53112958 C T ERO1L Silent p.L420L 0.22 TCGA-Q1-A5R3-01 15 102506334 102506334 C T MIR1302-11 5'Flank 0.06 TCGA-Q1-A5R3-01 15 25953178 25953178 G A ATP10A Silent p.S840S 0.12 TCGA-Q1-A5R3-01 15 64448174 64448174 C T PPIB 3'UTR 0.34 TCGA-Q1-A5R3-01 15 74287202 74287202 C T PML Missense_Mutation p.R17W 0.51 deleterious(0.01) benign(0.39) TCGA-Q1-A5R3-01 15 77776099 77776099 T G HMG20A 3'UTR 0.33 TCGA-Q1-A5R3-01 16 2150481 2150481 G A PKD1 Missense_Mutation p.R3162C 0.32 probably_damaging(1) TCGA-Q1-A5R3-01 16 2339537 2339537 G A ABCA3 Silent p.S866S 0.38 TCGA-Q1-A5R3-01 16 28995555 28995555 G A SPNS1 Missense_Mutation p.D508N 0.55 tolerated(0.13) benign(0.185) TCGA-Q1-A5R3-01 17 10225018 10225018 T G MYH13 Missense_Mutation p.N981T 0.27 tolerated(0.09) benign(0.031) TCGA-Q1-A5R3-01 17 10728889 10728889 C A PIRT Missense_Mutation p.S25I 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-Q1-A5R3-01 17 17801972 17801972 G A TOM1L2 Nonsense_Mutation p.R52* 0.19 TCGA-Q1-A5R3-01 17 2276743 2276743 C T SGSM2 Missense_Mutation p.S679L 0.25 deleterious(0) probably_damaging(0.939) TCGA-Q1-A5R3-01 17 26940567 26940567 G A RP11-192H23.4 Missense_Mutation p.A72V 0.25 tolerated_low_confidence(0.07) benign(0.382) TCGA-Q1-A5R3-01 17 29585383 29585383 C T NF1 Nonsense_Mutation p.Q1399* 0.23 TCGA-Q1-A5R3-01 17 34251737 34251737 C G RDM1 Missense_Mutation p.D147H 0.26 deleterious(0.03) possibly_damaging(0.826) TCGA-Q1-A5R3-01 17 37588194 37588194 C T MED1 Splice_Site p.X192_splice 0.14 TCGA-Q1-A5R3-01 17 66250580 66250580 G C AMZ2 Missense_Mutation p.D208H 0.38 tolerated(0.11) benign(0.098) TCGA-Q1-A5R3-01 17 80195676 80195676 A G SLC16A3 Missense_Mutation p.M344V 0.42 deleterious(0) probably_damaging(0.996) TCGA-Q1-A5R3-01 18 22805217 22805217 C A ZNF521 Missense_Mutation p.D889Y 0.66 deleterious(0) probably_damaging(0.99) TCGA-Q1-A5R3-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.70 deleterious(0.03) probably_damaging(1) TCGA-Q1-A5R3-01 18 54606544 54606544 T A WDR7 Silent p.V1328V 0.36 TCGA-Q1-A5R3-01 19 17013537 17013537 C T CPAMD8 Nonsense_Mutation p.W1583* 0.26 TCGA-Q1-A5R3-01 19 32974438 32974438 C G DPY19L3 3'UTR 0.29 TCGA-Q1-A5R3-01 19 3434392 3434392 C G NFIC Missense_Mutation p.S276C 0.12 deleterious(0.04) benign(0.109) TCGA-Q1-A5R3-01 19 42866575 42866575 G A MEGF8 Missense_Mutation p.E1895K 0.35 tolerated(0.17) possibly_damaging(0.449) TCGA-Q1-A5R3-01 19 45854574 45854574 C T KLC3 Missense_Mutation p.R492W 0.23 deleterious(0.02) benign(0.001) TCGA-Q1-A5R3-01 19 46305454 46305454 C G RSPH6A Missense_Mutation p.E574D 0.24 tolerated(0.11) possibly_damaging(0.524) TCGA-Q1-A5R3-01 19 50411685 50411685 C T NUP62 Silent p.T460T 0.38 TCGA-Q1-A5R3-01 19 55597237 55597237 C T EPS8L1 Missense_Mutation p.P472S 0.15 tolerated(0.07) benign(0.004) TCGA-Q1-A5R3-01 1 151752566 151752566 G A TDRKH Silent p.G94G 0.22 TCGA-Q1-A5R3-01 1 155287807 155287807 C G FDPS Missense_Mutation p.Q186E 0.29 deleterious(0.02) benign(0.127) TCGA-Q1-A5R3-01 1 156508650 156508650 G A IQGAP3 Missense_Mutation p.L1078F 0.43 deleterious(0) possibly_damaging(0.47) TCGA-Q1-A5R3-01 1 160593894 160593894 C T SLAMF1 Missense_Mutation p.R261K 0.37 tolerated(0.2) benign(0.105) TCGA-Q1-A5R3-01 1 169695912 169695912 G A SELE Missense_Mutation p.L561F 0.20 deleterious(0.01) benign(0.223) TCGA-Q1-A5R3-01 1 204131262 204131262 C G REN Missense_Mutation p.R43P 0.21 deleterious(0) probably_damaging(0.993) TCGA-Q1-A5R3-01 1 205238339 205238339 G A TMCC2 Missense_Mutation p.E337K 0.26 deleterious(0) probably_damaging(1) TCGA-Q1-A5R3-01 1 207643042 207643042 A T CR2 Missense_Mutation p.I274F 0.37 deleterious(0) probably_damaging(0.993) TCGA-Q1-A5R3-01 1 78189054 78189054 T G USP33 Missense_Mutation p.T482P 0.36 deleterious(0.03) probably_damaging(0.984) TCGA-Q1-A5R3-01 20 32880201 32880201 G A AHCY Silent p.T136T 0.27 TCGA-Q1-A5R3-01 20 49626582 49626582 G A KCNG1 Silent p.F98F 0.26 TCGA-Q1-A5R3-01 22 18347715 18347715 T C MICAL3 Missense_Mutation p.D852G 0.13 possibly_damaging(0.515) TCGA-Q1-A5R3-01 2 179406264 179406264 C G TTN Missense_Mutation p.D32514H 0.36 TCGA-Q1-A5R3-01 2 201722750 201722750 C T CLK1 Missense_Mutation p.R246H 0.21 tolerated(0.14) benign(0.004) TCGA-Q1-A5R3-01 2 202626361 202626361 G T ALS2 Missense_Mutation p.S119Y 0.47 deleterious(0.01) possibly_damaging(0.701) TCGA-Q1-A5R3-01 2 21252562 21252562 C A APOB Missense_Mutation p.M522I 0.17 benign(0.009) TCGA-Q1-A5R3-01 2 231921652 231921652 C G PSMD1 5'UTR 0.33 TCGA-Q1-A5R3-01 2 241535810 241535810 C T CAPN10 Silent p.Y451Y 0.38 TCGA-Q1-A5R3-01 3 105400388 105400388 T C CBLB Missense_Mutation p.N788S 0.17 tolerated_low_confidence(0.24) benign(0.021) TCGA-Q1-A5R3-01 3 137882330 137882330 C T DBR1 Missense_Mutation p.E268K 0.38 deleterious(0.01) benign(0.371) TCGA-Q1-A5R3-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.37 deleterious(0.04) probably_damaging(0.96) TCGA-Q1-A5R3-01 3 182587084 182587085 - A ATP11B Frame_Shift_Ins p.T613Nfs*7 0.29 TCGA-Q1-A5R3-01 3 186505011 186505011 G C EIF4A2 Silent p.L289L 0.24 TCGA-Q1-A5R3-01 3 23930915 23930915 G A UBE2E1 Intron 0.75 TCGA-Q1-A5R3-01 3 45636322 45636322 C A LIMD1 5'Flank 0.10 TCGA-Q1-A5R3-01 3 88102193 88102193 A T CGGBP1 3'UTR 0.78 TCGA-Q1-A5R3-01 4 114280416 114280416 G C ANK2 Missense_Mutation p.E3548Q 0.23 probably_damaging(0.999) TCGA-Q1-A5R3-01 4 152640600 152640600 G A PET112 Missense_Mutation p.H140Y 0.40 deleterious(0) probably_damaging(1) TCGA-Q1-A5R3-01 5 1219645 1219645 C T SLC6A19 Silent p.L468L 0.19 TCGA-Q1-A5R3-01 5 34949771 34949771 G A DNAJC21 Missense_Mutation p.E437K 0.16 tolerated(1) unknown(0) TCGA-Q1-A5R3-01 5 5235148 5235148 C T ADAMTS16 Silent p.F624F 0.43 TCGA-Q1-A5R3-01 5 56155622 56155623 AA - MAP3K1 Frame_Shift_Del p.S239Cfs*61 0.36 TCGA-Q1-A5R3-01 6 31324114 31324114 A T HLA-B Missense_Mutation p.L150Q 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-Q1-A5R3-01 6 7249558 7249558 G T RREB1 3'UTR 0.35 TCGA-Q1-A5R3-01 6 99771395 99771395 C T FAXC Missense_Mutation p.G250S 0.38 deleterious(0) probably_damaging(0.995) TCGA-Q1-A5R3-01 7 87537187 87537187 G C DBF4 Silent p.V578V 0.31 TCGA-Q1-A5R3-01 8 139163857 139163857 T G FAM135B Missense_Mutation p.Q954P 0.39 tolerated(0.2) benign(0) TCGA-Q1-A5R3-01 8 37978654 37978654 C G ASH2L Silent p.A384A 0.30 TCGA-Q1-A5R3-01 9 112020511 112020511 G T EPB41L4B Missense_Mutation p.P233Q 0.28 deleterious(0.01) possibly_damaging(0.802) TCGA-Q1-A5R3-01 9 117121944 117121944 C T AKNA Missense_Mutation p.A808T 0.35 tolerated(0.18) benign(0.125) TCGA-Q1-A5R3-01 9 20770028 20770028 C G FOCAD Intron 0.38 TCGA-Q1-A5R3-01 9 96025845 96025845 C G WNK2 Intron 0.38 TCGA-Q1-A5R3-01 X 148055078 148055078 C T AFF2 Silent p.R1115R 0.31 TCGA-Q1-A5R3-01 X 153070078 153070078 G A PDZD4 Missense_Mutation p.P347L 0.41 tolerated(0.45) probably_damaging(0.935) TCGA-Q1-A5R3-01 X 41203604 41203604 G A DDX3X Missense_Mutation p.R326H 0.08 deleterious(0) probably_damaging(0.998) TCGA-Q1-A5R3-01 X 71792631 71792631 C T HDAC8 5'UTR 0.46 TCGA-Q1-A6DT-01 10 102684122 102684122 A G FAM178A Missense_Mutation p.N455S 0.22 tolerated(0.26) benign(0.014) TCGA-Q1-A6DT-01 10 103827104 103827104 G C HPS6 Missense_Mutation p.E625Q 0.38 deleterious(0.01) possibly_damaging(0.792) TCGA-Q1-A6DT-01 10 116048803 116048803 C T VWA2 Silent p.L559L 0.50 TCGA-Q1-A6DT-01 10 27962426 27962426 C G MKX 3'UTR 0.38 TCGA-Q1-A6DT-01 10 45473403 45473403 C T C10orf10 Missense_Mutation p.G26S 0.13 tolerated(0.22) benign(0.116) TCGA-Q1-A6DT-01 10 50819456 50819456 G A SLC18A3 Missense_Mutation p.G224R 0.16 deleterious(0) probably_damaging(1) TCGA-Q1-A6DT-01 10 52601652 52601652 G C A1CF Missense_Mutation p.A120G 0.49 deleterious(0) possibly_damaging(0.602) TCGA-Q1-A6DT-01 10 75407373 75407373 G C SYNPO2L Silent p.L679L 0.25 TCGA-Q1-A6DT-01 10 98303715 98303715 G A TM9SF3 Intron 0.31 TCGA-Q1-A6DT-01 11 1086013 1086013 G A MUC2 Silent p.T951T 0.28 TCGA-Q1-A6DT-01 11 118922230 118922230 G C HYOU1 Missense_Mutation p.I482M 0.31 tolerated(0.2) possibly_damaging(0.781) TCGA-Q1-A6DT-01 11 123848062 123848062 C T OR10S1 Missense_Mutation p.V113I 0.11 tolerated(0.26) benign(0.003) TCGA-Q1-A6DT-01 11 17617633 17617633 C T OTOG Nonsense_Mutation p.R1165* 0.26 TCGA-Q1-A6DT-01 11 2424522 2424522 G A TSSC4 Missense_Mutation p.R220Q 0.29 deleterious(0.01) probably_damaging(0.934) TCGA-Q1-A6DT-01 11 57958484 57958484 C G OR9Q2 Missense_Mutation p.I174M 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-Q1-A6DT-01 11 59189567 59189567 T A OR5A2 Missense_Mutation p.N287I 0.16 deleterious(0) probably_damaging(1) TCGA-Q1-A6DT-01 11 6221355 6221355 G A OR52W1 Missense_Mutation p.R301H 0.44 deleterious(0.01) benign(0.019) TCGA-Q1-A6DT-01 11 64854019 64854019 C T ZFPL1 Missense_Mutation p.S116F 0.12 deleterious(0) benign(0.35) TCGA-Q1-A6DT-01 11 67059210 67059210 G C ANKRD13D Missense_Mutation p.K178N 0.16 deleterious(0) possibly_damaging(0.897) TCGA-Q1-A6DT-01 11 70317381 70317381 A C SHANK2 3'UTR 0.39 TCGA-Q1-A6DT-01 11 71277556 71277556 A G KRTAP5-10 3'UTR 0.15 TCGA-Q1-A6DT-01 11 8934001 8934001 G C AKIP1 Missense_Mutation p.R75T 0.28 tolerated(0.06) possibly_damaging(0.798) TCGA-Q1-A6DT-01 12 102517807 102517807 G A PARPBP Silent p.E47E 0.46 TCGA-Q1-A6DT-01 12 129189821 129189821 C T TMEM132C Nonsense_Mutation p.R770* 0.31 TCGA-Q1-A6DT-01 12 27068991 27068991 C G ASUN Missense_Mutation p.D398H 0.36 deleterious(0) probably_damaging(1) TCGA-Q1-A6DT-01 12 58019078 58019078 G A SLC26A10 Missense_Mutation p.A480T 0.52 deleterious(0.02) benign(0.3) TCGA-Q1-A6DT-01 12 67707575 67707575 A G CAND1 3'UTR 0.17 TCGA-Q1-A6DT-01 12 71286716 71286716 G A PTPRR Nonsense_Mutation p.Q34* 0.51 TCGA-Q1-A6DT-01 12 78605048 78605049 - T NAV3 3'Flank 0.30 TCGA-Q1-A6DT-01 12 93771956 93771956 C T NUDT4 5'UTR 0.14 TCGA-Q1-A6DT-01 13 25480224 25480227 CACT - CENPJ Frame_Shift_Del p.E650Vfs*17 0.28 TCGA-Q1-A6DT-01 13 28942801 28942801 C G FLT1 Intron 0.19 TCGA-Q1-A6DT-01 13 41706849 41706849 C A KBTBD6 5'UTR 0.26 TCGA-Q1-A6DT-01 13 58299233 58299233 G C PCDH17 Missense_Mutation p.Q1095H 0.12 tolerated_low_confidence(0.12) benign(0.002) TCGA-Q1-A6DT-01 13 92345909 92345909 C T GPC5 Missense_Mutation p.A265V 0.25 tolerated(0.19) benign(0.04) TCGA-Q1-A6DT-01 14 103592960 103592960 C T TNFAIP2 Nonsense_Mutation p.Q56* 0.09 TCGA-Q1-A6DT-01 14 30396556 30396556 T A PRKD1 Missense_Mutation p.I55F 0.33 tolerated(0.24) probably_damaging(0.938) TCGA-Q1-A6DT-01 14 33299455 33299455 T - AKAP6 3'UTR 0.26 TCGA-Q1-A6DT-01 14 75329962 75329962 G T PROX2 Missense_Mutation p.H192Q 0.22 tolerated(0.48) benign(0.028) TCGA-Q1-A6DT-01 14 76957920 76957920 C T ESRRB Silent p.I306I 0.13 TCGA-Q1-A6DT-01 14 79270053 79270053 G A NRXN3 Missense_Mutation p.R339H 0.17 deleterious(0) probably_damaging(0.989) TCGA-Q1-A6DT-01 14 92361324 92361324 C T FBLN5 Missense_Mutation p.G158R 0.19 deleterious(0) probably_damaging(1) TCGA-Q1-A6DT-01 15 102215848 102215848 C A TARSL2 Silent p.P581P 0.23 TCGA-Q1-A6DT-01 15 22709181 22709181 C T AC116165.1 5'Flank 0.15 TCGA-Q1-A6DT-01 15 27193366 27193366 G A GABRA5 Missense_Mutation p.A459T 0.20 tolerated_low_confidence(0.59) benign(0) TCGA-Q1-A6DT-01 15 30665323 30665323 G A CHRFAM7A Silent p.I62I 0.14 TCGA-Q1-A6DT-01 15 32928987 32928987 G C ARHGAP11A Missense_Mutation p.E671D 0.48 tolerated(0.14) possibly_damaging(0.67) TCGA-Q1-A6DT-01 15 35086922 35086922 G A ACTC1 Missense_Mutation p.R30C 0.23 deleterious_low_confidence(0.04) probably_damaging(0.963) TCGA-Q1-A6DT-01 15 48056979 48056979 G C SEMA6D Missense_Mutation p.K414N 0.21 deleterious(0) probably_damaging(0.999) TCGA-Q1-A6DT-01 15 64966714 64966714 C G ZNF609 Nonsense_Mutation p.S554* 0.14 TCGA-Q1-A6DT-01 15 66639586 66639586 G C TIPIN Intron 0.35 TCGA-Q1-A6DT-01 15 72119019 72119019 C G MYO9A Missense_Mutation p.E2517Q 0.25 tolerated_low_confidence(0.1) possibly_damaging(0.827) TCGA-Q1-A6DT-01 15 72638463 72638463 C G HEXA Intron 0.17 TCGA-Q1-A6DT-01 15 77474169 77474169 C G PEAK1 Missense_Mutation p.E34Q 0.24 tolerated(0.29) probably_damaging(0.914) TCGA-Q1-A6DT-01 16 1537772 1537772 C T PTX4 Missense_Mutation p.R109Q 0.32 deleterious(0.03) possibly_damaging(0.563) TCGA-Q1-A6DT-01 16 20994204 20994204 C T DNAH3 Missense_Mutation p.M2566I 0.20 deleterious(0.02) possibly_damaging(0.48) TCGA-Q1-A6DT-01 16 67313990 67313990 C G PLEKHG4 Missense_Mutation p.Q15E 0.18 deleterious_low_confidence(0.01) benign(0.156) TCGA-Q1-A6DT-01 16 78466571 78466571 G A WWOX Missense_Mutation p.M326I 0.22 deleterious(0.01) benign(0.001) TCGA-Q1-A6DT-01 16 87724057 87724057 C T JPH3 Silent p.F697F 0.14 TCGA-Q1-A6DT-01 16 87764168 87764168 C A KLHDC4 Nonsense_Mutation p.E197* 0.36 TCGA-Q1-A6DT-01 16 9857127 9857127 G A GRIN2A Missense_Mutation p.S1425L 0.47 tolerated(0.13) benign(0.224) TCGA-Q1-A6DT-01 17 10600725 10600725 C T SCO1 Missense_Mutation p.E34K 0.24 tolerated_low_confidence(0.27) benign(0.001) TCGA-Q1-A6DT-01 17 34935768 34935768 C G GGNBP2 Missense_Mutation p.I313M 0.26 deleterious(0) probably_damaging(0.931) TCGA-Q1-A6DT-01 17 39784359 39784359 C T KRT17 5'Flank 0.22 TCGA-Q1-A6DT-01 17 40441935 40441935 C G STAT5A Silent p.L60L 0.31 TCGA-Q1-A6DT-01 17 47123357 47123357 C T IGF2BP1 Missense_Mutation p.R501W 0.21 deleterious(0) probably_damaging(0.999) TCGA-Q1-A6DT-01 17 57134235 57134235 C T TRIM37 Splice_Site p.X400_splice 0.25 TCGA-Q1-A6DT-01 17 7339258 7339258 T A TMEM102 Missense_Mutation p.L23H 0.30 deleterious(0) probably_damaging(0.975) TCGA-Q1-A6DT-01 17 73910890 73910890 C T FBF1 Missense_Mutation p.E903K 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-Q1-A6DT-01 17 76067246 76067246 G A TNRC6C Silent p.P950P 0.50 TCGA-Q1-A6DT-01 17 80195168 80195168 C T SLC16A3 Silent p.Y174Y 0.33 TCGA-Q1-A6DT-01 17 80195570 80195570 G A SLC16A3 Silent p.A308A 0.29 TCGA-Q1-A6DT-01 18 29049120 29049123 ACAG - DSG3 Frame_Shift_Del p.D570Vfs*12 0.27 TCGA-Q1-A6DT-01 18 8143731 8143731 C T PTPRM Silent p.L752L 0.26 TCGA-Q1-A6DT-01 19 12137825 12137825 C G ZNF433 Intron 0.40 TCGA-Q1-A6DT-01 19 12936680 12936680 C T RTBDN Missense_Mutation p.G209E 0.20 tolerated(0.09) probably_damaging(0.998) TCGA-Q1-A6DT-01 19 15538983 15538983 G A WIZ Intron 0.24 TCGA-Q1-A6DT-01 19 17918562 17918562 C T B3GNT3 Intron 0.19 TCGA-Q1-A6DT-01 19 19035769 19035769 C T DDX49 Silent p.V336V 0.15 TCGA-Q1-A6DT-01 19 19625906 19625906 G C TSSK6 Missense_Mutation p.Q111E 0.23 tolerated(1) benign(0) TCGA-Q1-A6DT-01 19 41112348 41112348 G C LTBP4 Missense_Mutation p.G370R 0.42 deleterious(0) probably_damaging(1) TCGA-Q1-A6DT-01 19 42729234 42729234 G A ZNF526 Missense_Mutation p.E227K 0.28 tolerated(0.11) probably_damaging(0.985) TCGA-Q1-A6DT-01 19 42729255 42729255 G A ZNF526 Missense_Mutation p.E234K 0.16 tolerated(0.3) benign(0.002) TCGA-Q1-A6DT-01 19 43262184 43262184 G A PSG8 Missense_Mutation p.R227C 0.08 deleterious(0.04) probably_damaging(0.932) TCGA-Q1-A6DT-01 19 44131041 44131041 G A CADM4 Missense_Mutation p.R132W 0.54 deleterious(0) probably_damaging(0.912) TCGA-Q1-A6DT-01 19 46287476 46287476 T C DMWD 3'UTR 0.25 TCGA-Q1-A6DT-01 19 53669311 53669311 G A ZNF665 Silent p.S144S 0.27 TCGA-Q1-A6DT-01 1 103364276 103364276 C T COL11A1 Silent p.Q1398Q 0.31 TCGA-Q1-A6DT-01 1 109241261 109241261 G A PRPF38B Missense_Mutation p.M198I 0.32 tolerated(0.09) benign(0.349) TCGA-Q1-A6DT-01 1 109472616 109472616 A G GPSM2 3'UTR 0.21 TCGA-Q1-A6DT-01 1 111731372 111731372 G C DENND2D Missense_Mutation p.Q351E 0.20 deleterious(0) possibly_damaging(0.688) TCGA-Q1-A6DT-01 1 117509728 117509728 C T PTGFRN Missense_Mutation p.S612F 0.32 deleterious(0) probably_damaging(0.922) TCGA-Q1-A6DT-01 1 117509950 117509950 C G PTGFRN Nonsense_Mutation p.S686* 0.42 TCGA-Q1-A6DT-01 1 11796183 11796183 G A AGTRAP 5'Flank 0.33 TCGA-Q1-A6DT-01 1 149858613 149858613 G C HIST2H2AC Missense_Mutation p.R30P 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-Q1-A6DT-01 1 150705324 150705324 G C CTSS 3'UTR 0.38 TCGA-Q1-A6DT-01 1 152278983 152278983 G C FLG Missense_Mutation p.S2793R 0.15 benign(0.177) TCGA-Q1-A6DT-01 1 156563648 156563648 C G APOA1BP Intron 0.40 TCGA-Q1-A6DT-01 1 156705540 156705540 G A RRNAD1 Missense_Mutation p.R382Q 0.51 deleterious(0.03) benign(0.412) TCGA-Q1-A6DT-01 1 158389870 158389870 G A OR10K2 Nonsense_Mutation p.Q263* 0.78 TCGA-Q1-A6DT-01 1 167778974 167778974 G C ADCY10 Missense_Mutation p.Q1592E 0.24 tolerated(0.34) benign(0.003) TCGA-Q1-A6DT-01 1 17672565 17672565 G C PADI4 Silent p.L326L 0.25 TCGA-Q1-A6DT-01 1 176934347 176934347 C T ASTN1 Missense_Mutation p.R517Q 0.51 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-Q1-A6DT-01 1 182369123 182369123 C T TEDDM1 Missense_Mutation p.M166I 0.30 tolerated(0.38) benign(0.038) TCGA-Q1-A6DT-01 1 186273271 186273271 G C PRG4 Missense_Mutation p.K117N 0.22 probably_damaging(0.982) TCGA-Q1-A6DT-01 1 190066940 190066940 A T BRINP3 3'UTR 0.21 TCGA-Q1-A6DT-01 1 200817339 200817339 A T CAMSAP2 Missense_Mutation p.E481V 0.28 tolerated(0.28) benign(0.373) TCGA-Q1-A6DT-01 1 201061236 201061236 G A CACNA1S Silent p.F135F 0.48 TCGA-Q1-A6DT-01 1 2087451 2087451 G A PRKCZ Silent p.Q298Q 0.30 TCGA-Q1-A6DT-01 1 211748962 211748962 A G SLC30A1 Missense_Mutation p.V431A 0.33 tolerated(0.77) benign(0.001) TCGA-Q1-A6DT-01 1 236577572 236577572 C T EDARADD Missense_Mutation p.P45S 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-Q1-A6DT-01 1 240071991 240071991 G A CHRM3 Missense_Mutation p.V414M 0.17 tolerated(0.14) benign(0.006) TCGA-Q1-A6DT-01 1 45292952 45292952 C T PTCH2 Missense_Mutation p.A801T 0.23 tolerated(0.49) benign(0.044) TCGA-Q1-A6DT-01 1 85656020 85656020 C G SYDE2 Missense_Mutation p.L387F 0.19 tolerated_low_confidence(0.21) benign(0.169) TCGA-Q1-A6DT-01 1 93646208 93646208 C T CCDC18 5'Flank 0.40 TCGA-Q1-A6DT-01 20 17640216 17640216 C T RRBP1 Intron 0.20 TCGA-Q1-A6DT-01 20 17640494 17640494 C T RRBP1 Intron 0.30 TCGA-Q1-A6DT-01 20 25056152 25056152 C T VSX1 3'UTR 0.23 TCGA-Q1-A6DT-01 20 3146539 3146539 G A LZTS3 Silent p.F309F 0.30 TCGA-Q1-A6DT-01 20 33764083 33764083 G A PROCR Silent p.P145P 0.28 TCGA-Q1-A6DT-01 20 34638258 34638258 G A LINC00657 RNA 0.32 TCGA-Q1-A6DT-01 20 43090637 43090637 C T C20orf62 Missense_Mutation p.R134H 0.30 tolerated_low_confidence(0.51) possibly_damaging(0.715) TCGA-Q1-A6DT-01 20 46282996 46282996 A T NCOA3 3'Flank 0.07 TCGA-Q1-A6DT-01 20 48252876 48252876 G - B4GALT5 Frame_Shift_Del p.E381Sfs*5 0.30 TCGA-Q1-A6DT-01 20 56818759 56818759 G C PPP4R1L Intron 0.12 TCGA-Q1-A6DT-01 20 58443602 58443602 C T SYCP2 Missense_Mutation p.R1285H 0.16 tolerated(0.37) possibly_damaging(0.804) TCGA-Q1-A6DT-01 20 61512828 61512828 C G DIDO1 Missense_Mutation p.E1494Q 0.23 possibly_damaging(0.827) TCGA-Q1-A6DT-01 21 15858251 15858251 G A SAMSN1 Silent p.I436I 0.21 TCGA-Q1-A6DT-01 21 28338227 28338227 G A ADAMTS5 Missense_Mutation p.R162C 0.28 deleterious(0) probably_damaging(0.97) TCGA-Q1-A6DT-01 21 34160945 34160945 C T C21orf49 Missense_Mutation p.S22L 0.19 possibly_damaging(0.514) TCGA-Q1-A6DT-01 21 43256674 43256674 G C PRDM15 Missense_Mutation p.I728M 0.34 tolerated(0.14) benign(0.321) TCGA-Q1-A6DT-01 21 44835724 44835724 G A SIK1 3'UTR 0.21 TCGA-Q1-A6DT-01 22 24381725 24381725 C T GSTT1 Missense_Mutation p.D59N 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-Q1-A6DT-01 22 39385582 39385582 G C APOBEC3B Silent p.L230L 0.32 TCGA-Q1-A6DT-01 22 41605844 41605844 G A L3MBTL2 Missense_Mutation p.E57K 0.26 tolerated(0.67) benign(0.081) TCGA-Q1-A6DT-01 2 102644707 102644707 G A IL1R2 Nonsense_Mutation p.W350* 0.28 TCGA-Q1-A6DT-01 2 108905332 108905332 G A SULT1C2 5'UTR 0.16 TCGA-Q1-A6DT-01 2 11337678 11337678 G C ROCK2 Missense_Mutation p.Q1085E 0.19 deleterious(0) probably_damaging(0.935) TCGA-Q1-A6DT-01 2 128379604 128379604 C T MYO7B Silent p.F1165F 0.18 TCGA-Q1-A6DT-01 2 179615204 179615204 C T TTN Intron 0.29 TCGA-Q1-A6DT-01 2 232100031 232100031 C T ARMC9 Silent p.H239H 0.25 TCGA-Q1-A6DT-01 2 232578236 232578236 G C PTMA 3'UTR 0.29 TCGA-Q1-A6DT-01 2 239180028 239180028 G A PER2 Missense_Mutation p.P233S 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-Q1-A6DT-01 2 27845483 27845483 C G ZNF512 3'UTR 0.27 TCGA-Q1-A6DT-01 2 40655936 40655936 G A SLC8A1 Silent p.L495L 0.28 TCGA-Q1-A6DT-01 2 56419738 56419738 G A CCDC85A Missense_Mutation p.G135R 0.40 tolerated(0.05) probably_damaging(0.98) TCGA-Q1-A6DT-01 2 63283812 63283812 G C OTX1 3'UTR 0.50 TCGA-Q1-A6DT-01 3 108112905 108112906 TT - MYH15 Frame_Shift_Del p.E1764Gfs*9 0.30 TCGA-Q1-A6DT-01 3 111901081 111901081 C A SLC9C1 Missense_Mutation p.V850L 0.22 tolerated(1) benign(0.004) TCGA-Q1-A6DT-01 3 118619663 118619663 A - IGSF11 3'UTR 0.28 TCGA-Q1-A6DT-01 3 128849395 128849395 C T ISY1 Missense_Mutation p.E272K 0.13 deleterious(0) probably_damaging(0.976) TCGA-Q1-A6DT-01 3 129368279 129368279 A T TMCC1 3'UTR 0.23 TCGA-Q1-A6DT-01 3 157160261 157160261 C T PTX3 Silent p.V213V 0.10 TCGA-Q1-A6DT-01 3 176740457 176740457 T A TBL1XR1 3'UTR 0.25 TCGA-Q1-A6DT-01 3 185362430 185362430 C G IGF2BP2 3'UTR 0.28 TCGA-Q1-A6DT-01 3 197547201 197547201 G A LRCH3 Silent p.V180V 0.20 TCGA-Q1-A6DT-01 3 197547211 197547211 G A LRCH3 Missense_Mutation p.E184K 0.22 deleterious(0.02) possibly_damaging(0.886) TCGA-Q1-A6DT-01 3 21465554 21465554 G A ZNF385D Silent p.H285H 0.35 TCGA-Q1-A6DT-01 3 37284889 37284889 C T GOLGA4 5'UTR 0.25 TCGA-Q1-A6DT-01 3 37365514 37365514 C G GOLGA4 Missense_Mutation p.Q735E 0.15 benign(0.005) TCGA-Q1-A6DT-01 3 42701094 42701094 G C ZBTB47 Missense_Mutation p.R416P 0.42 tolerated(0.16) unknown(0) TCGA-Q1-A6DT-01 3 50296396 50296396 G C GNAI2 3'UTR 0.31 TCGA-Q1-A6DT-01 3 64083625 64083625 C G PRICKLE2 3'UTR 0.30 TCGA-Q1-A6DT-01 3 77696302 77696302 C T ROBO2 3'UTR 0.21 TCGA-Q1-A6DT-01 3 78735011 78735011 C G ROBO1 Missense_Mutation p.Q409H 0.33 tolerated(0.06) probably_damaging(0.998) TCGA-Q1-A6DT-01 4 103180638 103180638 G C SLC39A8 3'Flank 0.17 TCGA-Q1-A6DT-01 4 119158287 119158287 C T NDST3 Missense_Mutation p.A677V 0.15 tolerated(0.68) possibly_damaging(0.568) TCGA-Q1-A6DT-01 4 124323415 124323415 C G SPRY1 Missense_Mutation p.C223W 0.20 deleterious(0) probably_damaging(0.999) TCGA-Q1-A6DT-01 4 134071436 134071436 A C PCDH10 Missense_Mutation p.K47N 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-Q1-A6DT-01 4 147560396 147560396 G T POU4F2 Missense_Mutation p.G35V 0.40 tolerated_low_confidence(0.16) unknown(0) TCGA-Q1-A6DT-01 4 15704627 15704627 G C BST1 5'UTR 0.40 TCGA-Q1-A6DT-01 4 169167643 169167643 G A DDX60 Missense_Mutation p.L1364F 0.28 tolerated(0.06) benign(0.157) TCGA-Q1-A6DT-01 4 183959344 183959344 C T FAM92A1P2 RNA 0.10 TCGA-Q1-A6DT-01 4 185309907 185309907 G C IRF2 3'UTR 0.16 TCGA-Q1-A6DT-01 4 72363244 72363245 - T SLC4A4 Frame_Shift_Ins p.L669Ffs*19 0.11 TCGA-Q1-A6DT-01 4 80328008 80328008 G A GK2 Silent p.P449P 0.16 TCGA-Q1-A6DT-01 4 99407914 99407914 C T TSPAN5 Missense_Mutation p.R85Q 0.23 deleterious(0) probably_damaging(0.938) TCGA-Q1-A6DT-01 5 102491616 102491616 T C PPIP5K2 Silent p.Y469Y 0.27 TCGA-Q1-A6DT-01 5 176887655 176887655 G C DBN1 Missense_Mutation p.S276W 0.28 deleterious(0) probably_damaging(1) TCGA-Q1-A6DT-01 5 23521142 23521142 A G PRDM9 Missense_Mutation p.K121R 0.21 tolerated_low_confidence(1) benign(0) TCGA-Q1-A6DT-01 5 31526312 31526313 CT - DROSHA Frame_Shift_Del p.R243Afs*25 0.15 TCGA-Q1-A6DT-01 5 71494680 71494680 G A MAP1B Missense_Mutation p.R1833H 0.23 benign(0.034) TCGA-Q1-A6DT-01 5 90666490 90666490 C T ARRDC3 3'UTR 0.35 TCGA-Q1-A6DT-01 6 108066240 108066240 C T SCML4 Missense_Mutation p.D199N 0.15 deleterious(0) possibly_damaging(0.826) TCGA-Q1-A6DT-01 6 131962640 131962640 G T ENPP3 Missense_Mutation p.G42W 0.27 deleterious(0) probably_damaging(0.995) TCGA-Q1-A6DT-01 6 135518263 135518263 G C MYB Missense_Mutation p.L456F 0.23 tolerated(0.71) possibly_damaging(0.674) TCGA-Q1-A6DT-01 6 146757027 146757027 C T GRM1 3'UTR 0.57 TCGA-Q1-A6DT-01 6 152552684 152552684 T A SYNE1 Missense_Mutation p.N6961Y 0.29 probably_damaging(0.974) TCGA-Q1-A6DT-01 6 168352292 168352292 G C MLLT4 Missense_Mutation p.E1413Q 0.64 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-Q1-A6DT-01 6 27218847 27218847 C G PRSS16 Silent p.V206V 0.21 TCGA-Q1-A6DT-01 6 29141852 29141852 C T OR2J2 Missense_Mutation p.A147V 0.23 tolerated(1) benign(0.002) TCGA-Q1-A6DT-01 6 29454693 29454693 G C MAS1L Silent p.L329L 0.26 TCGA-Q1-A6DT-01 6 32053854 32053854 G T TNXB Missense_Mutation p.P941T 0.20 benign(0.311) TCGA-Q1-A6DT-01 6 33366154 33366154 C T KIFC1 Silent p.G80G 0.12 TCGA-Q1-A6DT-01 6 35107979 35107979 C T TCP11 Intron 0.30 TCGA-Q1-A6DT-01 6 38830105 38830105 C G DNAH8 Missense_Mutation p.P1844A 0.15 probably_damaging(1) TCGA-Q1-A6DT-01 6 4037792 4037792 C T PRPF4B Missense_Mutation p.S467F 0.29 deleterious(0.03) possibly_damaging(0.485) TCGA-Q1-A6DT-01 6 42231041 42231041 G A TRERF1 Intron 0.77 TCGA-Q1-A6DT-01 6 56044587 56044587 C T COL21A1 Silent p.T143T 0.22 TCGA-Q1-A6DT-01 6 66005999 66005999 G C EYS Missense_Mutation p.L594V 0.27 tolerated(0.51) benign(0.012) TCGA-Q1-A6DT-01 6 70070940 70070940 C A BAI3 Missense_Mutation p.P1259T 0.40 tolerated(0.08) benign(0.196) TCGA-Q1-A6DT-01 6 7288972 7288972 C A SSR1 3'UTR 0.24 TCGA-Q1-A6DT-01 6 79655921 79655921 G A PHIP Missense_Mutation p.S1476F 0.29 deleterious(0.02) possibly_damaging(0.804) TCGA-Q1-A6DT-01 7 11630259 11630259 C T THSD7A Nonsense_Mutation p.W427* 0.17 TCGA-Q1-A6DT-01 7 126249508 126249508 G C GRM8 Missense_Mutation p.P468A 0.19 tolerated(0.26) probably_damaging(0.999) TCGA-Q1-A6DT-01 7 2568678 2568678 C G LFNG 3'Flank 0.40 TCGA-Q1-A6DT-01 7 4308532 4308532 A - SDK1 3'UTR 0.11 TCGA-Q1-A6DT-01 7 43664395 43664395 T A STK17A Missense_Mutation p.F400Y 0.07 deleterious(0.01) probably_damaging(0.968) TCGA-Q1-A6DT-01 7 44804562 44804562 C T ZMIZ2 Silent p.L651L 0.50 TCGA-Q1-A6DT-01 7 45697411 45697411 C T ADCY1 Missense_Mutation p.R412C 0.14 deleterious(0) probably_damaging(0.997) TCGA-Q1-A6DT-01 7 94037505 94037505 G A COL1A2 Missense_Mutation p.G217E 0.36 unknown(0) TCGA-Q1-A6DT-01 8 105502654 105502654 C G LRP12 3'UTR 0.34 TCGA-Q1-A6DT-01 8 110587517 110587517 G A SYBU Missense_Mutation p.S537F 0.20 deleterious(0.01) benign(0.037) TCGA-Q1-A6DT-01 8 116423585 116423585 A G TRPS1 3'UTR 0.21 TCGA-Q1-A6DT-01 8 121262997 121262997 T C COL14A1 Missense_Mutation p.V915A 0.24 tolerated(0.86) benign(0.007) TCGA-Q1-A6DT-01 8 144732899 144732899 C T ZNF623 Missense_Mutation p.T286I 0.17 deleterious(0) probably_damaging(0.962) TCGA-Q1-A6DT-01 8 42231857 42231857 G A DKK4 Silent p.L146L 0.32 TCGA-Q1-A6DT-01 8 73480146 73480146 G A KCNB2 Silent p.T59T 0.37 TCGA-Q1-A6DT-01 8 95448953 95448953 G A FSBP Silent p.I48I 0.14 TCGA-Q1-A6DT-01 8 97244130 97244130 C A UQCRB Missense_Mutation p.V44L 0.41 deleterious(0.03) benign(0.38) TCGA-Q1-A6DT-01 9 108337407 108337407 T C FKTN Silent p.L32L 0.24 TCGA-Q1-A6DT-01 9 112003838 112003838 T C EPB41L4B Intron 0.15 TCGA-Q1-A6DT-01 9 115380203 115380203 C T KIAA1958 Intron 0.22 TCGA-Q1-A6DT-01 9 116346522 116346522 G A RGS3 Missense_Mutation p.E944K 0.20 deleterious(0.05) possibly_damaging(0.762) TCGA-Q1-A6DT-01 9 117854 117854 G A FOXD4 Missense_Mutation p.P89L 0.38 deleterious(0) benign(0.083) TCGA-Q1-A6DT-01 9 119094720 119094720 G A PAPPA Missense_Mutation p.D1124N 0.23 deleterious(0.01) possibly_damaging(0.539) TCGA-Q1-A6DT-01 9 119460693 119460693 G C TRIM32 Missense_Mutation p.Q224H 0.10 tolerated(0.1) benign(0.012) TCGA-Q1-A6DT-01 9 125315488 125315488 G A OR1N2 Missense_Mutation p.G14R 0.14 tolerated(0.35) benign(0) TCGA-Q1-A6DT-01 9 128070017 128070017 T C GAPVD1 Silent p.D433D 0.11 TCGA-Q1-A6DT-01 9 131071960 131071960 G C TRUB2 Missense_Mutation p.Q289E 0.26 tolerated(0.07) benign(0.012) TCGA-Q1-A6DT-01 9 131072039 131072039 G A TRUB2 Silent p.F262F 0.21 TCGA-Q1-A6DT-01 9 131073194 131073194 G A TRUB2 Silent p.L214L 0.20 TCGA-Q1-A6DT-01 9 135919210 135919210 G A GTF3C5 Missense_Mutation p.E157K 0.14 tolerated(0.22) benign(0.087) TCGA-Q1-A6DT-01 9 34521603 34521603 A T ENHO Missense_Mutation p.C31S 0.16 deleterious_low_confidence(0) benign(0.291) TCGA-Q1-A6DT-01 9 71433448 71433448 T C PIP5K1B 5'UTR 0.28 TCGA-Q1-A6DT-01 9 82323513 82323513 A G TLE4 Missense_Mutation p.S359G 0.24 tolerated(1) benign(0) TCGA-Q1-A6DT-01 9 8499796 8499796 A T PTPRD Missense_Mutation p.S725T 0.35 tolerated(0.06) benign(0.314) TCGA-Q1-A6DT-01 9 90503153 90503153 C T SPATA31E1 Nonsense_Mutation p.Q1251* 0.14 TCGA-Q1-A6DT-01 9 91616521 91616521 C T S1PR3 Missense_Mutation p.R136W 0.27 deleterious(0) probably_damaging(1) TCGA-Q1-A6DT-01 X 100608249 100608249 A T BTK Missense_Mutation p.L614Q 0.18 tolerated(0.27) benign(0.064) TCGA-Q1-A6DT-01 X 100912483 100912483 C G ARMCX2 Missense_Mutation p.R31T 0.10 deleterious_low_confidence(0.03) benign(0.015) TCGA-Q1-A6DT-01 X 112021251 112021251 C T AMOT 3'UTR 0.21 TCGA-Q1-A6DT-01 X 119388904 119388904 C T ZBTB33 Missense_Mutation p.T545I 0.12 deleterious(0) probably_damaging(0.999) TCGA-Q1-A6DT-01 X 125298663 125298663 G A DCAF12L2 Silent p.D415D 0.18 TCGA-Q1-A6DT-01 X 132159937 132159937 T G USP26 Missense_Mutation p.N771T 0.41 tolerated(0.09) benign(0.438) TCGA-Q1-A6DT-01 X 138914448 138914448 A T ATP11C 5'Flank 0.28 TCGA-Q1-A6DT-01 X 151283808 151283808 A T RP11-1007I13.4 RNA 0.20 TCGA-Q1-A6DT-01 X 153459060 153459060 G C OPN1MW Missense_Mutation p.L302F 0.13 tolerated(0.59) probably_damaging(0.909) TCGA-Q1-A6DT-01 X 153579990 153579990 G T FLNA Missense_Mutation p.P2328T 0.19 tolerated(0.31) benign(0) TCGA-Q1-A6DT-01 X 155003588 155003588 C T SPRY3 Missense_Mutation p.R19C 0.34 deleterious(0.04) benign(0.002) TCGA-Q1-A6DT-01 X 46918303 46918303 G A JADE3 Missense_Mutation p.G766S 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-Q1-A6DT-01 X 54040926 54040926 C T PHF8 Missense_Mutation p.E259K 0.40 deleterious(0) benign(0.239) TCGA-Q1-A6DT-01 X 75648437 75648437 T C MAGEE1 Silent p.A38A 0.12 TCGA-Q1-A6DT-01 X 8995967 8995967 C T FAM9B Missense_Mutation p.R145K 0.21 deleterious(0.03) probably_damaging(0.973) TCGA-Q1-A6DT-01 X 96724791 96724791 C T DIAPH2 Intron 0.18 TCGA-Q1-A6DV-01 10 86133745 86133745 G A CCSER2 Intron 0.58 TCGA-Q1-A6DV-01 10 89727278 89727278 C - PTEN 3'UTR 0.28 TCGA-Q1-A6DV-01 11 118047203 118047203 C T SCN2B 5'UTR 0.27 TCGA-Q1-A6DV-01 11 59807831 59807831 G A OOSP2 5'UTR 0.47 TCGA-Q1-A6DV-01 12 113593224 113593224 G A CCDC42B Splice_Site p.X283_splice 0.43 TCGA-Q1-A6DV-01 12 6925242 6925243 AT - CD4 Frame_Shift_Del p.I210Sfs*3 0.17 TCGA-Q1-A6DV-01 12 75874739 75874739 G A GLIPR1 Missense_Mutation p.D27N 0.13 deleterious(0.03) possibly_damaging(0.706) TCGA-Q1-A6DV-01 14 23866005 23866005 C T MYH6 Silent p.V730V 0.23 TCGA-Q1-A6DV-01 16 28889812 28889812 C A ATP2A1 5'UTR 0.30 TCGA-Q1-A6DV-01 16 3799625 3799626 - A CREBBP Intron 0.39 TCGA-Q1-A6DV-01 16 4013125 4013125 A G ADCY9 3'UTR 0.11 TCGA-Q1-A6DV-01 16 50360205 50360205 T G BRD7 Missense_Mutation p.K395N 0.30 deleterious(0.01) benign(0.436) TCGA-Q1-A6DV-01 16 67700945 67700945 G A C16orf86 Silent p.T24T 0.41 TCGA-Q1-A6DV-01 16 84163885 84163885 C T HSDL1 Silent p.A124A 0.09 TCGA-Q1-A6DV-01 16 89954104 89954104 G A TCF25 Missense_Mutation p.R198Q 0.09 deleterious(0.03) possibly_damaging(0.475) TCGA-Q1-A6DV-01 17 3656605 3656605 G A ITGAE Silent p.Y549Y 0.46 TCGA-Q1-A6DV-01 17 54526549 54526549 T C ANKFN1 Splice_Site p.X406_splice 0.29 TCGA-Q1-A6DV-01 17 62041962 62041962 T C SCN4A Missense_Mutation p.N440D 0.16 deleterious(0) probably_damaging(0.998) TCGA-Q1-A6DV-01 17 74266697 74266697 C T UBALD2 3'UTR 0.36 TCGA-Q1-A6DV-01 17 9604465 9604465 C T USP43 Missense_Mutation p.A522V 0.33 tolerated(1) benign(0.002) TCGA-Q1-A6DV-01 19 47423264 47423265 TT - ARHGAP35 Frame_Shift_Del p.F445Hfs*12 0.30 TCGA-Q1-A6DV-01 19 47423758 47423758 C T ARHGAP35 Missense_Mutation p.A609V 0.15 deleterious(0) probably_damaging(0.998) TCGA-Q1-A6DV-01 19 56538760 56538760 G A NLRP5 Silent p.P387P 0.39 TCGA-Q1-A6DV-01 19 59022902 59022902 C T SLC27A5 Missense_Mutation p.G141S 0.11 tolerated(0.73) benign(0.001) TCGA-Q1-A6DV-01 19 7747433 7747433 C T TRAPPC5 Silent p.F98F 0.32 TCGA-Q1-A6DV-01 1 114224863 114224863 G A MAGI3 Intron 0.47 TCGA-Q1-A6DV-01 1 222717481 222717481 C T HHIPL2 Silent p.T124T 0.35 TCGA-Q1-A6DV-01 20 34170081 34170081 C T FER1L4 RNA 0.10 TCGA-Q1-A6DV-01 20 60584215 60584215 C T TAF4 Missense_Mutation p.V593M 0.13 probably_damaging(0.997) TCGA-Q1-A6DV-01 22 35820213 35820213 C T MCM5 Missense_Mutation p.R724C 0.40 deleterious(0) probably_damaging(0.97) TCGA-Q1-A6DV-01 22 42556695 42556695 T A TCF20 3'UTR 0.40 TCGA-Q1-A6DV-01 2 166810324 166810324 G T TTC21B 5'UTR 0.20 TCGA-Q1-A6DV-01 2 176948108 176948108 C T EVX2 Missense_Mutation p.A133T 0.35 tolerated(0.22) benign(0.007) TCGA-Q1-A6DV-01 2 216232605 216232605 A G FN1 Silent p.H2333H 0.10 TCGA-Q1-A6DV-01 3 129694732 129694732 C T TRH Nonsense_Mutation p.Q25* 0.36 TCGA-Q1-A6DV-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.21 tolerated(0.05) possibly_damaging(0.704) TCGA-Q1-A6DV-01 3 20025919 20025919 A T RAB5A 3'UTR 0.15 TCGA-Q1-A6DV-01 3 49763460 49763460 G A IP6K1 3'UTR 0.35 TCGA-Q1-A6DV-01 3 52552812 52552812 G A STAB1 Missense_Mutation p.R1654Q 0.42 tolerated(0.57) benign(0.009) TCGA-Q1-A6DV-01 5 133308051 133308051 G A VDAC1 3'UTR 0.50 TCGA-Q1-A6DV-01 5 157232884 157232884 G C CLINT1 Missense_Mutation p.S311C 0.34 deleterious(0.05) possibly_damaging(0.56) TCGA-Q1-A6DV-01 6 166571847 166571847 G A T Missense_Mutation p.R422C 0.25 tolerated(0.06) benign(0.005) TCGA-Q1-A6DV-01 6 22569708 22569708 G A HDGFL1 5'Flank 0.40 TCGA-Q1-A6DV-01 7 151917806 151917807 AA - KMT2C Frame_Shift_Del p.T1173Pfs*8 0.28 TCGA-Q1-A6DV-01 7 28996305 28996305 T G AC005013.5 5'Flank 0.41 TCGA-Q1-A6DV-01 7 66423185 66423185 A T TMEM248 3'UTR 0.54 TCGA-Q1-A6DV-01 8 12881120 12881120 C T KIAA1456 3'UTR 0.31 TCGA-Q1-A6DV-01 8 12948839 12948839 C T DLC1 Silent p.K1281K 0.27 TCGA-Q1-A6DV-01 8 58192647 58192647 G T LINC00588 RNA 0.33 TCGA-Q1-A6DV-01 9 117165063 117165063 G A DFNB31 Silent p.L899L 0.09 TCGA-Q1-A6DV-01 X 120009305 120009305 C T CT47B1 Missense_Mutation p.A74T 0.25 tolerated(0.39) benign(0.031) TCGA-Q1-A6DV-01 X 122336540 122336540 T C GRIA3 Intron 0.40 TCGA-Q1-A6DV-01 X 128926434 128926434 C T SASH3 Silent p.H191H 0.28 TCGA-Q1-A6DV-01 X 128976026 128976026 T G ZDHHC9 5'UTR 0.33 TCGA-Q1-A6DV-01 X 30236904 30236904 C T MAGEB2 Silent p.A69A 0.30 TCGA-Q1-A6DV-01 X 70338671 70338671 G T MED12 Missense_Mutation p.D23Y 0.26 probably_damaging(0.998) TCGA-Q1-A6DV-01 X 70712255 70712255 G A Y_RNA 5'Flank 0.38 TCGA-Q1-A6DW-01 10 112724609 112724609 C T SHOC2 Missense_Mutation p.L165F 0.50 deleterious(0.04) probably_damaging(0.986) TCGA-Q1-A6DW-01 10 126677441 126677441 A G CTBP2 3'Flank 0.06 TCGA-Q1-A6DW-01 10 13234490 13234490 C T MCM10 Missense_Mutation p.S557L 0.38 deleterious(0) probably_damaging(0.985) TCGA-Q1-A6DW-01 10 15151177 15151177 G A NMT2 3'UTR 0.32 TCGA-Q1-A6DW-01 10 15255565 15255565 G A FAM171A1 Silent p.N674N 0.43 TCGA-Q1-A6DW-01 10 28899712 28899712 C - WAC Frame_Shift_Del p.T417Sfs*3 0.33 TCGA-Q1-A6DW-01 10 38121767 38121767 C T ZNF248 Silent p.E172E 0.24 TCGA-Q1-A6DW-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.78 deleterious(0.02) probably_damaging(0.989) TCGA-Q1-A6DW-01 11 102709885 102709885 G A MMP3 Missense_Mutation p.A342V 0.10 deleterious(0) probably_damaging(0.991) TCGA-Q1-A6DW-01 11 1215458 1215458 G A MUC5AC RNA 0.50 TCGA-Q1-A6DW-01 11 122722543 122722543 G C CRTAM Silent p.V112V 0.65 TCGA-Q1-A6DW-01 11 123993733 123993733 C T VWA5A Missense_Mutation p.S276L 0.60 tolerated(0.06) benign(0.005) TCGA-Q1-A6DW-01 11 1267515 1267515 C G MUC5B Silent p.L3135L 0.58 TCGA-Q1-A6DW-01 11 133801565 133801565 C T IGSF9B Silent p.A412A 0.56 TCGA-Q1-A6DW-01 11 56143873 56143873 G C OR8U1 Missense_Mutation p.M258I 0.45 deleterious(0.02) probably_damaging(0.997) TCGA-Q1-A6DW-01 12 109577475 109577475 A G ACACB Missense_Mutation p.R89G 0.36 deleterious_low_confidence(0.02) benign(0.003) TCGA-Q1-A6DW-01 12 121880220 121880220 C T KDM2B Silent p.L1008L 0.50 TCGA-Q1-A6DW-01 12 133795514 133795514 C T ANHX Missense_Mutation p.G366E 0.27 deleterious(0.01) possibly_damaging(0.755) TCGA-Q1-A6DW-01 12 47630147 47630147 C T PCED1B 3'UTR 0.38 TCGA-Q1-A6DW-01 12 498527 498527 G A KDM5A 5'UTR 0.40 TCGA-Q1-A6DW-01 12 81101604 81101604 G A MYF6 Missense_Mutation p.G36R 0.42 tolerated(0.33) probably_damaging(1) TCGA-Q1-A6DW-01 13 111098209 111098209 G C COL4A2 Missense_Mutation p.D331H 0.33 benign(0.327) TCGA-Q1-A6DW-01 13 114018388 114018388 G C GRTP1 5'UTR 0.42 TCGA-Q1-A6DW-01 13 37006641 37006641 G A CCNA1 5'UTR 0.29 TCGA-Q1-A6DW-01 13 98828359 98828359 C G RNF113B 3'UTR 0.48 TCGA-Q1-A6DW-01 14 100192553 100192553 C G CYP46A1 Missense_Mutation p.S431C 0.31 deleterious(0) possibly_damaging(0.873) TCGA-Q1-A6DW-01 14 50092135 50092135 A T DNAAF2 3'UTR 0.38 TCGA-Q1-A6DW-01 14 99635862 99635862 C T BCL11B 3'UTR 0.32 TCGA-Q1-A6DW-01 15 65759487 65759487 G C DPP8 Nonsense_Mutation p.Y553* 0.30 TCGA-Q1-A6DW-01 16 17201273 17201273 G C XYLT1 3'UTR 0.46 TCGA-Q1-A6DW-01 16 19070741 19070741 C T TMC7 Silent p.L677L 0.44 TCGA-Q1-A6DW-01 16 2168727 2168727 G A PKD1 Missense_Mutation p.S160F 0.44 benign(0.091) TCGA-Q1-A6DW-01 16 4861264 4861264 G C GLYR1 Missense_Mutation p.F498L 0.29 tolerated(0.42) benign(0.204) TCGA-Q1-A6DW-01 16 56906600 56906600 T A SLC12A3 Missense_Mutation p.W333R 0.32 deleterious(0) probably_damaging(0.997) TCGA-Q1-A6DW-01 16 67268278 67268278 C T FHOD1 Missense_Mutation p.E473K 0.26 tolerated(0.19) benign(0.242) TCGA-Q1-A6DW-01 16 88666221 88666221 G A ZC3H18 Missense_Mutation p.R318Q 0.37 deleterious_low_confidence(0.01) unknown(0) TCGA-Q1-A6DW-01 17 18023258 18023258 G A MYO15A Missense_Mutation p.E382K 0.43 benign(0.003) TCGA-Q1-A6DW-01 17 19555037 19555037 T C ALDH3A2 Missense_Mutation p.W111R 0.23 deleterious(0.02) probably_damaging(0.977) TCGA-Q1-A6DW-01 17 3833611 3833611 A G ATP2A3 Missense_Mutation p.C910R 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-Q1-A6DW-01 17 4634777 4634777 G A MED11 5'UTR 0.22 TCGA-Q1-A6DW-01 17 47284097 47284097 C T GNGT2 3'UTR 0.28 TCGA-Q1-A6DW-01 17 56081642 56081642 G T SRSF1 3'Flank 0.25 TCGA-Q1-A6DW-01 17 57228532 57228532 G A SKA2 Intron 0.28 TCGA-Q1-A6DW-01 18 44121822 44121822 C T LOXHD1 Missense_Mutation p.R166H 0.26 deleterious(0.03) probably_damaging(0.98) TCGA-Q1-A6DW-01 18 55155677 55155677 G C ONECUT2 3'UTR 0.38 TCGA-Q1-A6DW-01 19 11323983 11323983 C T DOCK6 Missense_Mutation p.E1454K 0.38 deleterious(0) possibly_damaging(0.484) TCGA-Q1-A6DW-01 19 15299118 15299118 G A NOTCH3 Nonsense_Mutation p.Q474* 0.35 TCGA-Q1-A6DW-01 19 22785250 22785250 G A AC011467.1 5'Flank 0.29 TCGA-Q1-A6DW-01 19 35250451 35250451 C T ZNF599 Missense_Mutation p.G419R 0.27 deleterious(0) probably_damaging(1) TCGA-Q1-A6DW-01 19 38697563 38697563 G C SIPA1L3 3'UTR 0.31 TCGA-Q1-A6DW-01 19 40520585 40520585 G C ZNF546 Missense_Mutation p.E470Q 0.34 tolerated(0.05) possibly_damaging(0.728) TCGA-Q1-A6DW-01 19 40579942 40579942 G A ZNF780A 3'UTR 0.24 TCGA-Q1-A6DW-01 19 41019436 41019436 G A SPTBN4 Missense_Mutation p.D914N 0.40 deleterious(0.03) possibly_damaging(0.67) TCGA-Q1-A6DW-01 19 45213775 45213775 G T CEACAM16 Silent p.G425G 0.40 TCGA-Q1-A6DW-01 19 47844948 47844948 C G C5AR2 Missense_Mutation p.Q298E 0.28 deleterious(0.02) benign(0.112) TCGA-Q1-A6DW-01 19 49348690 49348690 C T PLEKHA4 Silent p.P560P 0.39 TCGA-Q1-A6DW-01 19 643436 643436 C G FGF22 Missense_Mutation p.F115L 0.40 tolerated(0.34) probably_damaging(0.999) TCGA-Q1-A6DW-01 1 103379961 103379961 C A COL11A1 Missense_Mutation p.G1309C 0.29 unknown(0) TCGA-Q1-A6DW-01 1 110466722 110466722 C T CSF1 Silent p.L493L 0.42 TCGA-Q1-A6DW-01 1 113217534 113217534 G A MOV10 5'UTR 0.36 TCGA-Q1-A6DW-01 1 113657099 113657099 G A LRIG2 Missense_Mutation p.E711K 0.34 deleterious(0) possibly_damaging(0.574) TCGA-Q1-A6DW-01 1 114454370 114454370 G C DCLRE1B Missense_Mutation p.E386Q 0.39 tolerated_low_confidence(0.26) benign(0.011) TCGA-Q1-A6DW-01 1 147096378 147096378 C T BCL9 Missense_Mutation p.P1300L 0.72 tolerated(0.1) benign(0.026) TCGA-Q1-A6DW-01 1 161495319 161495319 G A HSPA6 Missense_Mutation p.E291K 0.20 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-Q1-A6DW-01 1 181453098 181453098 G C CACNA1E Missense_Mutation p.G73A 0.43 tolerated(0.15) possibly_damaging(0.794) TCGA-Q1-A6DW-01 1 205042274 205042274 G A CNTN2 Missense_Mutation p.E975K 0.56 tolerated(0.35) benign(0.13) TCGA-Q1-A6DW-01 1 28864640 28864640 C G RCC1 3'UTR 0.25 TCGA-Q1-A6DW-01 1 36202125 36202125 C T CLSPN Missense_Mutation p.R1331Q 0.32 tolerated(0.23) benign(0.027) TCGA-Q1-A6DW-01 1 36204766 36204766 C T CLSPN Missense_Mutation p.R1134Q 0.20 deleterious(0) probably_damaging(0.991) TCGA-Q1-A6DW-01 1 41236471 41236471 G A NFYC Missense_Mutation p.G346R 0.33 deleterious_low_confidence(0) benign(0.436) TCGA-Q1-A6DW-01 1 44467157 44467157 C T SLC6A9 Missense_Mutation p.V442M 0.25 deleterious(0) probably_damaging(0.989) TCGA-Q1-A6DW-01 1 51910614 51910614 G C EPS15 Missense_Mutation p.H301D 0.25 deleterious(0) benign(0.062) TCGA-Q1-A6DW-01 20 39989952 39989958 GGCAGTC T EMILIN3 In_Frame_Del p.D751_Q753delinsK 0.51 TCGA-Q1-A6DW-01 20 45188626 45188626 G C SLC13A3 3'UTR 0.29 TCGA-Q1-A6DW-01 20 49201008 49201008 C T PTPN1 3'UTR 0.30 TCGA-Q1-A6DW-01 20 50225060 50225060 G C ATP9A Silent p.L914L 0.17 TCGA-Q1-A6DW-01 21 40619736 40619736 G A BRWD1 Missense_Mutation p.S791L 0.34 tolerated(0.23) possibly_damaging(0.842) TCGA-Q1-A6DW-01 21 45215091 45215091 G A RRP1 Missense_Mutation p.E128K 0.35 deleterious(0.01) possibly_damaging(0.904) TCGA-Q1-A6DW-01 22 28504220 28504220 C T TTC28 Missense_Mutation p.R538Q 0.29 tolerated(0.07) probably_damaging(0.984) TCGA-Q1-A6DW-01 2 105915091 105915091 C T TGFBRAP1 Missense_Mutation p.A254T 0.09 tolerated(0.07) probably_damaging(0.938) TCGA-Q1-A6DW-01 2 113943595 113943595 C T PSD4 Missense_Mutation p.S464L 0.37 deleterious_low_confidence(0) benign(0.306) TCGA-Q1-A6DW-01 2 141092125 141092125 C T LRP1B Missense_Mutation p.M4040I 0.25 benign(0.072) TCGA-Q1-A6DW-01 2 165561498 165561498 G A COBLL1 Missense_Mutation p.P372S 0.33 tolerated(0.14) benign(0.019) TCGA-Q1-A6DW-01 2 171258178 171258178 C T MYO3B Silent p.L702L 0.33 TCGA-Q1-A6DW-01 2 203149076 203149076 G A NOP58 Silent p.L102L 0.31 TCGA-Q1-A6DW-01 2 238657916 238657916 C T LRRFIP1 Silent p.S120S 0.11 TCGA-Q1-A6DW-01 2 27548818 27548818 G C GTF3C2 3'UTR 0.23 TCGA-Q1-A6DW-01 2 61415276 61415276 G A USP34 Silent p.V3534V 0.32 TCGA-Q1-A6DW-01 2 65571869 65571869 C T SPRED2 Missense_Mutation p.R63Q 0.32 tolerated(0.05) probably_damaging(0.999) TCGA-Q1-A6DW-01 3 100541493 100541493 G T ABI3BP Intron 0.42 TCGA-Q1-A6DW-01 3 122514354 122514354 C T DIRC2 Silent p.F105F 0.19 TCGA-Q1-A6DW-01 3 168801417 168801417 G C MECOM 3'UTR 0.17 TCGA-Q1-A6DW-01 3 184870595 184870595 G C C3orf70 Missense_Mutation p.S6W 0.26 deleterious_low_confidence(0) benign(0.093) TCGA-Q1-A6DW-01 3 185375096 185375096 C T IGF2BP2 Missense_Mutation p.R455K 0.15 tolerated(0.08) benign(0.061) TCGA-Q1-A6DW-01 3 194117596 194117596 G A GP5 Silent p.C472C 0.37 TCGA-Q1-A6DW-01 3 195510853 195510853 T C MUC4 Missense_Mutation p.N2533S 0.12 benign(0) TCGA-Q1-A6DW-01 3 33538710 33538710 C T CLASP2 3'UTR 0.38 TCGA-Q1-A6DW-01 3 47628403 47628403 C T SMARCC1 3'UTR 0.41 TCGA-Q1-A6DW-01 3 48538599 48538599 G A SHISA5 Silent p.S68S 0.27 TCGA-Q1-A6DW-01 3 49939856 49939856 C T MST1R Missense_Mutation p.R396Q 0.43 deleterious(0) probably_damaging(0.99) TCGA-Q1-A6DW-01 3 56667374 56667374 C A FAM208A Nonsense_Mutation p.E1149* 0.44 TCGA-Q1-A6DW-01 3 69101209 69101209 G C TMF1 Missense_Mutation p.S10C 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-Q1-A6DW-01 3 7348315 7348315 C G GRM7 Missense_Mutation p.Q337E 0.40 tolerated(1) benign(0.052) TCGA-Q1-A6DW-01 3 9834753 9834753 C A ARPC4 5'Flank 0.32 TCGA-Q1-A6DW-01 4 140587070 140587070 C G MGST2 5'UTR 0.24 TCGA-Q1-A6DW-01 4 155718042 155718042 C T RBM46 Silent p.G46G 0.38 TCGA-Q1-A6DW-01 4 165890861 165890861 C G TRIM61 Missense_Mutation p.K98N 0.22 deleterious(0) benign(0.288) TCGA-Q1-A6DW-01 4 178274470 178274470 C A NEIL3 Missense_Mutation p.L350I 0.38 tolerated(0.47) benign(0.001) TCGA-Q1-A6DW-01 4 2516050 2516050 G A RNF4 3'UTR 0.30 TCGA-Q1-A6DW-01 4 83793119 83793119 G A SEC31A Missense_Mutation p.R254C 0.52 deleterious(0) possibly_damaging(0.766) TCGA-Q1-A6DW-01 5 140249735 140249735 C T PCDHA11 Silent p.V349V 0.36 TCGA-Q1-A6DW-01 5 5476114 5476114 T C KIAA0947 Missense_Mutation p.W2148R 0.10 deleterious(0) probably_damaging(1) TCGA-Q1-A6DW-01 5 624663 624663 G C CEP72 Missense_Mutation p.E161Q 0.12 tolerated(1) benign(0.015) TCGA-Q1-A6DW-01 5 68737508 68737508 T G MARVELD2 3'UTR 0.38 TCGA-Q1-A6DW-01 6 109837248 109837248 T C AK9 Missense_Mutation p.I1293V 0.35 tolerated(0.13) benign(0.181) TCGA-Q1-A6DW-01 6 130467229 130467229 G A SAMD3 Missense_Mutation p.S374L 0.51 tolerated(0.48) benign(0.004) TCGA-Q1-A6DW-01 6 31605302 31605302 G A PRRC2A Missense_Mutation p.R2138Q 0.36 unknown(0) TCGA-Q1-A6DW-01 6 31936177 31936177 C T SKIV2L Silent p.A977A 0.40 TCGA-Q1-A6DW-01 6 35911729 35911729 C T SLC26A8 Missense_Mutation p.R954H 0.35 tolerated_low_confidence(0.62) possibly_damaging(0.84) TCGA-Q1-A6DW-01 6 39034011 39034011 C T GLP1R Silent p.I147I 0.38 TCGA-Q1-A6DW-01 7 100661892 100661892 C T MUC12 Missense_Mutation p.P5328L 0.32 unknown(0) TCGA-Q1-A6DW-01 7 100804275 100804275 C T AP1S1 3'UTR 0.47 TCGA-Q1-A6DW-01 7 102108530 102108530 C T LRWD1 Missense_Mutation p.R234W 0.19 tolerated(0.08) benign(0.097) TCGA-Q1-A6DW-01 7 104654142 104654142 C T KMT2E 5'Flank 0.45 TCGA-Q1-A6DW-01 7 151877154 151877154 G A KMT2C Nonsense_Mutation p.R2403* 0.71 TCGA-Q1-A6DW-01 7 31920462 31920462 A G PDE1C Missense_Mutation p.L107S 0.51 deleterious(0) probably_damaging(0.999) TCGA-Q1-A6DW-01 8 102680513 102680513 C T GRHL2 3'UTR 0.36 TCGA-Q1-A6DW-01 8 140631235 140631235 G A KCNK9 Missense_Mutation p.R131C 0.50 deleterious(0) probably_damaging(0.987) TCGA-Q1-A6DW-01 8 28932813 28932813 C T KIF13B Silent p.V1502V 0.47 TCGA-Q1-A6DW-01 8 30539546 30539546 G A GSR Nonsense_Mutation p.R396* 0.48 TCGA-Q1-A6DW-01 8 30705231 30705231 C G TEX15 Missense_Mutation p.E435Q 0.52 deleterious(0.02) possibly_damaging(0.836) TCGA-Q1-A6DW-01 8 37633451 37633451 C T PROSC Missense_Mutation p.R205W 0.25 deleterious(0) probably_damaging(0.988) TCGA-Q1-A6DW-01 8 38677586 38677586 C G TACC1 Missense_Mutation p.T275R 0.53 tolerated(0.4) benign(0.125) TCGA-Q1-A6DW-01 9 112900327 112900327 G A PALM2-AKAP2 Missense_Mutation p.E835K 0.45 tolerated(0.7) benign(0.008) TCGA-Q1-A6DW-01 9 128678118 128678118 C T PBX3 Missense_Mutation p.S143L 0.28 tolerated(0.32) benign(0.063) TCGA-Q1-A6DW-01 9 130167088 130167088 C T SLC2A8 Intron 0.30 TCGA-Q1-A6DW-01 9 136568062 136568062 G A SARDH Silent p.F548F 0.38 TCGA-Q1-A6DW-01 9 139568327 139568327 C T AGPAT2 Silent p.A238A 0.45 TCGA-Q1-A6DW-01 9 140128658 140128658 C T SLC34A3 Silent p.L341L 0.33 TCGA-Q1-A6DW-01 9 140176066 140176066 C T TOR4A 3'UTR 0.63 TCGA-Q1-A6DW-01 X 101095505 101095505 A G NXF5 Missense_Mutation p.C222R 0.25 deleterious(0) benign(0.175) TCGA-Q1-A6DW-01 X 105193672 105193672 G A NRK Missense_Mutation p.E1488K 0.36 tolerated(0.16) probably_damaging(0.916) TCGA-Q1-A6DW-01 X 120008797 120008797 T A CT47B1 Missense_Mutation p.E243V 0.25 deleterious(0) unknown(0) TCGA-Q1-A6DW-01 X 122336583 122336583 C A GRIA3 Intron 0.39 TCGA-Q1-A6DW-01 X 1315003 1315003 C G CRLF2 Missense_Mutation p.E220Q 0.29 tolerated(0.25) benign(0.082) TCGA-Q1-A6DW-01 X 140984709 140984709 C T MAGEC3 Nonsense_Mutation p.Q389* 0.31 TCGA-Q1-A6DW-01 X 150349573 150349573 C T GPR50 Silent p.I506I 0.28 TCGA-Q1-A6DW-01 X 30254216 30254216 C T MAGEB3 Missense_Mutation p.R59C 0.52 tolerated(0.31) benign(0.002) TCGA-Q1-A6DW-01 X 41205855 41205855 C T DDX3X Missense_Mutation p.T532M 0.41 deleterious(0) probably_damaging(0.994) TCGA-Q1-A6DW-01 X 57620522 57620522 T C ZXDB Missense_Mutation p.F681L 0.36 tolerated(1) benign(0.008) TCGA-Q1-A6DW-01 X 57936104 57936104 C T ZXDA Missense_Mutation p.A251T 0.42 tolerated(0.15) benign(0.162) TCGA-Q1-A73O-01 10 100152754 100152754 G C PYROXD2 Missense_Mutation p.S291C 0.28 deleterious(0) possibly_damaging(0.738) TCGA-Q1-A73O-01 10 101645515 101645515 G C DNMBP Missense_Mutation p.P1243A 0.24 tolerated(0.22) benign(0.2) TCGA-Q1-A73O-01 10 103433427 103433427 C G FBXW4 Missense_Mutation p.Q120H 0.22 deleterious(0.02) possibly_damaging(0.549) TCGA-Q1-A73O-01 10 105005982 105005982 G C RPEL1 Missense_Mutation p.E77Q 0.20 tolerated(0.16) probably_damaging(0.943) TCGA-Q1-A73O-01 10 105817941 105817941 C G COL17A1 Silent p.L410L 0.33 TCGA-Q1-A73O-01 10 106139912 106139912 G C CCDC147 Missense_Mutation p.K433N 0.27 deleterious(0.02) possibly_damaging(0.618) TCGA-Q1-A73O-01 10 107023311 107023311 G A SORCS3 3'UTR 0.18 TCGA-Q1-A73O-01 10 111651574 111651574 G A XPNPEP1 Silent p.I107I 0.30 TCGA-Q1-A73O-01 10 112541279 112541279 G A RBM20 Silent p.L304L 0.33 TCGA-Q1-A73O-01 10 112541507 112541507 G A RBM20 Silent p.R380R 0.23 TCGA-Q1-A73O-01 10 115364439 115364439 G C NRAP Missense_Mutation p.H1386D 0.28 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 10 115804371 115804371 C T ADRB1 Silent p.I160I 0.19 TCGA-Q1-A73O-01 10 115973251 115973251 C G TDRD1 Missense_Mutation p.H660D 0.18 tolerated(0.62) benign(0) TCGA-Q1-A73O-01 10 116603586 116603586 G C FAM160B1 Missense_Mutation p.Q301H 0.29 tolerated(0.15) benign(0.056) TCGA-Q1-A73O-01 10 118394403 118394403 C G PNLIPRP2 Nonsense_Mutation p.S290* 0.22 TCGA-Q1-A73O-01 10 118897487 118897487 C G VAX1 Missense_Mutation p.K27N 0.28 tolerated_low_confidence(0.08) unknown(0) TCGA-Q1-A73O-01 10 119043870 119043870 G C PDZD8 Missense_Mutation p.H792D 0.46 tolerated(0.15) benign(0.075) TCGA-Q1-A73O-01 10 119765365 119765365 G A RAB11FIP2 3'UTR 0.20 TCGA-Q1-A73O-01 10 119798568 119798568 C T RAB11FIP2 Missense_Mutation p.E394K 0.17 tolerated(0.65) benign(0.099) TCGA-Q1-A73O-01 10 123239462 123239462 G A FGFR2 Missense_Mutation p.S793L 0.32 deleterious(0) probably_damaging(0.995) TCGA-Q1-A73O-01 10 123719111 123719111 C G NSMCE4A Splice_Site p.X330_splice 0.30 TCGA-Q1-A73O-01 10 124009176 124009176 G C TACC2 Missense_Mutation p.Q2926H 0.31 probably_damaging(0.991) TCGA-Q1-A73O-01 10 124390648 124390648 G C DMBT1 Missense_Mutation p.G1937A 0.29 deleterious(0.05) probably_damaging(1) TCGA-Q1-A73O-01 10 125506281 125506281 C T CPXM2 Silent p.%3D 0.36 TCGA-Q1-A73O-01 10 128908536 128908536 C G DOCK1 Silent p.L826L 0.07 TCGA-Q1-A73O-01 10 129906098 129906098 G C MKI67 Missense_Mutation p.P1336A 0.28 deleterious(0.03) possibly_damaging(0.883) TCGA-Q1-A73O-01 10 131639260 131639260 C T EBF3 Missense_Mutation p.R461Q 0.27 deleterious_low_confidence(0) benign(0.308) TCGA-Q1-A73O-01 10 134731957 134731957 C T TTC40 Silent p.Q642Q 0.28 TCGA-Q1-A73O-01 10 135193640 135193640 C T PAOX Missense_Mutation p.H107Y 0.24 tolerated(0.2) probably_damaging(0.955) TCGA-Q1-A73O-01 10 17278316 17278316 C T VIM Silent p.L433L 0.17 TCGA-Q1-A73O-01 10 18964258 18964258 G C ARL5B 3'UTR 0.17 TCGA-Q1-A73O-01 10 27322178 27322178 C T ANKRD26 Silent p.K1261K 0.21 TCGA-Q1-A73O-01 10 299232 299232 G A ZMYND11 3'UTR 0.25 TCGA-Q1-A73O-01 10 31816595 31816595 G A ZEB1 3'UTR 0.35 TCGA-Q1-A73O-01 10 32308830 32308830 C G KIF5B Missense_Mutation p.L754F 0.24 tolerated(0.05) possibly_damaging(0.454) TCGA-Q1-A73O-01 10 33545282 33545282 G A NRP1 Missense_Mutation p.S259L 0.12 deleterious(0) probably_damaging(0.952) TCGA-Q1-A73O-01 10 3824162 3824162 G C KLF6 Missense_Mutation p.S116C 0.25 tolerated(0.11) probably_damaging(0.987) TCGA-Q1-A73O-01 10 42971067 42971067 C T LINC00839 RNA 0.20 TCGA-Q1-A73O-01 10 43881529 43881529 C T HNRNPF 3'UTR 0.34 TCGA-Q1-A73O-01 10 45477983 45477983 G A RASSF4 Silent p.L51L 0.39 TCGA-Q1-A73O-01 10 45938983 45938983 C G ALOX5 Nonsense_Mutation p.S524* 0.34 TCGA-Q1-A73O-01 10 49639240 49639240 G A MAPK8 Silent p.L355L 0.20 TCGA-Q1-A73O-01 10 50678926 50678926 G C ERCC6 Nonsense_Mutation p.S1027* 0.37 TCGA-Q1-A73O-01 10 5790636 5790636 C T FAM208B Missense_Mutation p.S1751F 0.20 tolerated(0.11) benign(0.39) TCGA-Q1-A73O-01 10 58118402 58118402 G A ZWINT Missense_Mutation p.P236L 0.14 tolerated_low_confidence(0.16) benign(0.004) TCGA-Q1-A73O-01 10 63191012 63191012 C T TMEM26 Missense_Mutation p.E117K 0.12 tolerated(0.66) benign(0.018) TCGA-Q1-A73O-01 10 64028352 64028352 C T RTKN2 Silent p.L6L 0.35 TCGA-Q1-A73O-01 10 64975041 64975041 C T JMJD1C Missense_Mutation p.D333N 0.27 deleterious(0.01) possibly_damaging(0.57) TCGA-Q1-A73O-01 10 68686978 68686978 G C LRRTM3 Missense_Mutation p.E102Q 0.18 tolerated(0.25) probably_damaging(0.918) TCGA-Q1-A73O-01 10 70968732 70968732 G A SUPV3L1 Missense_Mutation p.E768K 0.32 tolerated_low_confidence(0.52) benign(0.005) TCGA-Q1-A73O-01 10 73122362 73122362 C G SLC29A3 Missense_Mutation p.I475M 0.31 deleterious(0.04) possibly_damaging(0.507) TCGA-Q1-A73O-01 10 73580086 73580086 C T PSAP Missense_Mutation p.E306K 0.17 tolerated(0.88) benign(0.002) TCGA-Q1-A73O-01 10 74452672 74452672 G C MCU Intron 0.32 TCGA-Q1-A73O-01 10 75277418 75277418 G T USP54 Missense_Mutation p.F922L 0.31 tolerated_low_confidence(0.14) benign(0.004) TCGA-Q1-A73O-01 10 75434741 75434741 C G AGAP5 Silent p.T559T 0.15 TCGA-Q1-A73O-01 10 75434831 75434831 C T AGAP5 Silent p.R529R 0.26 TCGA-Q1-A73O-01 10 75529389 75529389 G T SEC24C Silent p.L860L 0.26 TCGA-Q1-A73O-01 10 75531416 75531416 G A SEC24C 3'UTR 0.33 TCGA-Q1-A73O-01 10 75554361 75554361 G A ZSWIM8 Missense_Mutation p.E958K 0.26 deleterious(0) possibly_damaging(0.908) TCGA-Q1-A73O-01 10 75562434 75562434 C T NDST2 Missense_Mutation p.E842K 0.19 tolerated(0.26) benign(0.005) TCGA-Q1-A73O-01 10 79552246 79552246 G A DLG5 Silent p.V1904V 0.14 TCGA-Q1-A73O-01 10 81923365 81923365 G C ANXA11 Missense_Mutation p.F318L 0.20 deleterious(0.04) benign(0.439) TCGA-Q1-A73O-01 10 89726845 89726845 G C PTEN 3'UTR 0.20 TCGA-Q1-A73O-01 10 91143935 91143935 C T IFIT1B Missense_Mutation p.H289Y 0.23 tolerated(0.23) benign(0.049) TCGA-Q1-A73O-01 10 94818001 94818001 G C EXOC6 Missense_Mutation p.K768N 0.23 deleterious(0.02) benign(0.334) TCGA-Q1-A73O-01 10 95262912 95262912 C G CEP55 Missense_Mutation p.Q76E 0.17 tolerated(0.27) benign(0.002) TCGA-Q1-A73O-01 10 97154431 97154431 C T SORBS1 Splice_Site p.X433_splice 0.21 TCGA-Q1-A73O-01 10 97373741 97373741 C G ALDH18A1 Missense_Mutation p.D595H 0.19 deleterious(0) possibly_damaging(0.862) TCGA-Q1-A73O-01 10 97752362 97752362 C T ENTPD1-AS1 Intron 0.29 TCGA-Q1-A73O-01 11 102477320 102477320 G C MMP20 Nonsense_Mutation p.S300* 0.28 TCGA-Q1-A73O-01 11 104899968 104899968 C G CASP1 Missense_Mutation p.D297H 0.20 deleterious(0) probably_damaging(0.992) TCGA-Q1-A73O-01 11 107260832 107260832 G C CWF19L2 Missense_Mutation p.Q614E 0.29 deleterious(0.03) benign(0.013) TCGA-Q1-A73O-01 11 107375622 107375622 G C ALKBH8 Missense_Mutation p.S586C 0.27 tolerated(0.07) benign(0.02) TCGA-Q1-A73O-01 11 108122745 108122745 C G ATM Missense_Mutation p.P597A 0.11 tolerated(0.09) probably_damaging(0.979) TCGA-Q1-A73O-01 11 1082321 1082321 G A MUC2 Silent p.K592K 0.30 TCGA-Q1-A73O-01 11 108276164 108276164 C T C11orf65 Missense_Mutation p.M184I 0.24 deleterious(0.01) possibly_damaging(0.796) TCGA-Q1-A73O-01 11 111573944 111573944 C T SIK2 Nonsense_Mutation p.R249* 0.28 TCGA-Q1-A73O-01 11 111594257 111594257 C G SIK2 Missense_Mutation p.Q729E 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-Q1-A73O-01 11 111890287 111890287 C G DIXDC1 3'UTR 0.26 TCGA-Q1-A73O-01 11 111951136 111951136 G A C11orf57 Silent p.R58R 0.31 TCGA-Q1-A73O-01 11 113852023 113852023 C T HTR3A Silent p.L127L 0.26 TCGA-Q1-A73O-01 11 117054546 117054546 G A SIDT2 Missense_Mutation p.E252K 0.21 deleterious(0.02) benign(0.3) TCGA-Q1-A73O-01 11 117772015 117772015 C T TMPRSS13 3'Flank 0.42 TCGA-Q1-A73O-01 11 117772100 117772100 G A TMPRSS13 3'Flank 0.17 TCGA-Q1-A73O-01 11 118425999 118425999 G A IFT46 Missense_Mutation p.S126F 0.31 deleterious(0.01) probably_damaging(0.958) TCGA-Q1-A73O-01 11 118472018 118472018 C T ARCN1 3'UTR 0.33 TCGA-Q1-A73O-01 11 118472585 118472585 C T ARCN1 3'UTR 0.31 TCGA-Q1-A73O-01 11 118473166 118473166 C T ARCN1 3'UTR 0.21 TCGA-Q1-A73O-01 11 118767803 118767803 G A BCL9L 3'UTR 0.12 TCGA-Q1-A73O-01 11 119058009 119058009 C T PDZD3 Missense_Mutation p.R121W 0.24 deleterious(0) probably_damaging(0.992) TCGA-Q1-A73O-01 11 119171536 119171536 C T CBL 3'UTR 0.24 TCGA-Q1-A73O-01 11 11924287 11924287 G C USP47 Missense_Mutation p.D139H 0.29 deleterious(0) possibly_damaging(0.83) TCGA-Q1-A73O-01 11 121358831 121358831 G A SORL1 Missense_Mutation p.A207T 0.35 tolerated(1) benign(0.006) TCGA-Q1-A73O-01 11 121466404 121466404 C G SORL1 Missense_Mutation p.P1481R 0.33 tolerated(0.09) benign(0.235) TCGA-Q1-A73O-01 11 121483498 121483498 G C SORL1 Missense_Mutation p.E1792D 0.17 deleterious(0.02) probably_damaging(0.93) TCGA-Q1-A73O-01 11 121986323 121986323 G A BLID Missense_Mutation p.S103F 0.16 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-Q1-A73O-01 11 122931493 122931493 C T HSPA8 Silent p.L73L 0.18 TCGA-Q1-A73O-01 11 123756083 123756083 G A TMEM225 Missense_Mutation p.S17F 0.40 deleterious(0) possibly_damaging(0.831) TCGA-Q1-A73O-01 11 123886816 123886816 G A OR10G4 Missense_Mutation p.D179N 0.29 deleterious(0.01) probably_damaging(1) TCGA-Q1-A73O-01 11 125880590 125880590 C G CDON Splice_Site p.X400_splice 0.26 TCGA-Q1-A73O-01 11 1263912 1263912 C T MUC5B Silent p.P1934P 0.17 TCGA-Q1-A73O-01 11 130078419 130078419 C T ST14 Silent p.F703F 0.27 TCGA-Q1-A73O-01 11 130784826 130784826 C G SNX19 Missense_Mutation p.E337Q 0.23 tolerated(0.05) possibly_damaging(0.709) TCGA-Q1-A73O-01 11 132285105 132285105 C G OPCML 3'UTR 0.24 TCGA-Q1-A73O-01 11 13408637 13408637 C G ARNTL 3'UTR 0.15 TCGA-Q1-A73O-01 11 1467069 1467069 C A BRSK2 Silent p.L432L 0.28 TCGA-Q1-A73O-01 11 14901774 14901774 G A CYP2R1 Missense_Mutation p.S303L 0.33 deleterious(0.02) possibly_damaging(0.884) TCGA-Q1-A73O-01 11 1629350 1629350 G C KRTAP5-3 Missense_Mutation p.S89C 0.23 deleterious(0.03) unknown(0) TCGA-Q1-A73O-01 11 16807925 16807925 C T PLEKHA7 3'Flank 0.30 TCGA-Q1-A73O-01 11 17632185 17632185 G A OTOG Missense_Mutation p.D1792N 0.31 benign(0.008) TCGA-Q1-A73O-01 11 1769107 1769107 C G RP11-295K3.1 Missense_Mutation p.K309N 0.40 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-Q1-A73O-01 11 18451395 18451395 C T LDHC Missense_Mutation p.S119L 0.26 tolerated(0.71) benign(0.015) TCGA-Q1-A73O-01 11 194459 194459 C T SCGB1C1 3'UTR 0.12 TCGA-Q1-A73O-01 11 199426 199426 C G ODF3 Missense_Mutation p.P198A 0.21 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 11 22296234 22296234 G A ANO5 Silent p.L785L 0.28 TCGA-Q1-A73O-01 11 22844582 22844582 A G SVIP 3'UTR 0.35 TCGA-Q1-A73O-01 11 26732861 26732861 G A SLC5A12 Silent p.L150L 0.13 TCGA-Q1-A73O-01 11 281517 281517 G C NLRP6 Missense_Mutation p.E595Q 0.30 tolerated(0.15) benign(0.023) TCGA-Q1-A73O-01 11 281661 281661 G A NLRP6 Missense_Mutation p.E643K 0.25 tolerated(0.07) benign(0.437) TCGA-Q1-A73O-01 11 2869097 2869097 G A KCNQ1 Missense_Mutation p.R632K 0.20 tolerated(0.62) benign(0.22) TCGA-Q1-A73O-01 11 31112999 31112999 G C DCDC1 Missense_Mutation p.I726M 0.27 deleterious(0.02) possibly_damaging(0.651) TCGA-Q1-A73O-01 11 32126850 32126850 G A RCN1 3'UTR 0.60 TCGA-Q1-A73O-01 11 33106191 33106191 C T CSTF3 3'UTR 0.24 TCGA-Q1-A73O-01 11 33112139 33112139 C G CSTF3 Missense_Mutation p.R527T 0.23 deleterious(0) probably_damaging(0.963) TCGA-Q1-A73O-01 11 33113860 33113860 C G CSTF3 Missense_Mutation p.E468Q 0.21 deleterious(0.04) probably_damaging(0.981) TCGA-Q1-A73O-01 11 33113887 33113887 C T CSTF3 Splice_Site p.X459_splice 0.19 TCGA-Q1-A73O-01 11 3380802 3380802 G C ZNF195 Nonsense_Mutation p.S479* 0.31 TCGA-Q1-A73O-01 11 34097834 34097834 G C CAPRIN1 Missense_Mutation p.E140Q 0.25 deleterious(0) probably_damaging(0.982) TCGA-Q1-A73O-01 11 34119297 34119297 G A CAPRIN1 Missense_Mutation p.G685E 0.56 deleterious(0) unknown(0) TCGA-Q1-A73O-01 11 34378318 34378318 G C ABTB2 Missense_Mutation p.I271M 0.28 deleterious(0) possibly_damaging(0.641) TCGA-Q1-A73O-01 11 397562 397562 C T PKP3 Missense_Mutation p.S323L 0.42 deleterious(0) benign(0.446) TCGA-Q1-A73O-01 11 405938 405938 G A SIGIRR Silent p.A397A 0.23 TCGA-Q1-A73O-01 11 43411241 43411241 G C TTC17 Missense_Mutation p.E97Q 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-Q1-A73O-01 11 43702327 43702327 C G HSD17B12 5'UTR 0.21 TCGA-Q1-A73O-01 11 46407230 46407230 G C CHRM4 Missense_Mutation p.S293C 0.23 tolerated(0.08) probably_damaging(0.994) TCGA-Q1-A73O-01 11 46726060 46726060 G A ZNF408 Silent p.Q270Q 0.32 TCGA-Q1-A73O-01 11 46806154 46806154 G A CKAP5 Nonsense_Mutation p.Q680* 0.23 TCGA-Q1-A73O-01 11 47256436 47256436 G T DDB2 Silent p.G277G 0.29 TCGA-Q1-A73O-01 11 47345231 47345231 G A MADD Missense_Mutation p.D1463N 0.27 deleterious(0) probably_damaging(0.911) TCGA-Q1-A73O-01 11 47346268 47346268 G A MADD Intron 0.25 TCGA-Q1-A73O-01 11 47765561 47765561 G C FNBP4 Missense_Mutation p.S467C 0.19 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 11 48157793 48157793 C G PTPRJ Missense_Mutation p.I606M 0.29 deleterious(0) probably_damaging(0.988) TCGA-Q1-A73O-01 11 48181580 48181580 C G PTPRJ Missense_Mutation p.I1179M 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-Q1-A73O-01 11 50003374 50003374 A G OR4C12 Missense_Mutation p.S222P 0.17 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-Q1-A73O-01 11 5079977 5079977 C G OR52E2 Missense_Mutation p.G294A 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-Q1-A73O-01 11 5411111 5411111 C G OR51M1 Missense_Mutation p.I161M 0.28 tolerated(0.07) probably_damaging(0.916) TCGA-Q1-A73O-01 11 55563425 55563425 C G OR5D14 Missense_Mutation p.L132V 0.23 deleterious(0) probably_damaging(0.982) TCGA-Q1-A73O-01 11 57004286 57004286 C T APLNR Missense_Mutation p.D65N 0.38 deleterious(0.02) probably_damaging(0.988) TCGA-Q1-A73O-01 11 5701146 5701146 C G TRIM5 Missense_Mutation p.E88Q 0.29 tolerated(0.13) possibly_damaging(0.891) TCGA-Q1-A73O-01 11 57335082 57335082 C G UBE2L6 Translation_Start_Site p.M1? 0.26 deleterious(0.03) benign(0.251) TCGA-Q1-A73O-01 11 57512547 57512547 G A BTBD18 Nonsense_Mutation p.Q400* 0.28 TCGA-Q1-A73O-01 11 57518610 57518610 G A BTBD18 Silent p.L17L 0.20 TCGA-Q1-A73O-01 11 57569356 57569356 G C CTNND1 Missense_Mutation p.E370Q 0.24 deleterious(0) probably_damaging(0.928) TCGA-Q1-A73O-01 11 5758467 5758467 G C OR56B1 Missense_Mutation p.E241Q 0.42 tolerated(0.12) probably_damaging(0.955) TCGA-Q1-A73O-01 11 59344396 59344396 C G OSBP Missense_Mutation p.Q721H 0.29 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 11 6024172 6024172 G A OR56A4 Silent p.L69L 0.32 TCGA-Q1-A73O-01 11 61183222 61183222 C T CPSF7 Missense_Mutation p.E377K 0.40 deleterious(0.04) benign(0.017) TCGA-Q1-A73O-01 11 61197647 61197647 C T SDHAF2 Missense_Mutation p.S10L 0.30 tolerated_low_confidence(0.83) benign(0) TCGA-Q1-A73O-01 11 6129417 6129417 C T OR56B4 Nonsense_Mutation p.Q137* 0.19 TCGA-Q1-A73O-01 11 61300491 61300491 G A SYT7 Silent p.L182L 0.20 TCGA-Q1-A73O-01 11 61722613 61722613 G C BEST1 Missense_Mutation p.E3Q 0.31 deleterious(0) probably_damaging(0.991) TCGA-Q1-A73O-01 11 61897557 61897557 C G INCENP Silent p.L186L 0.40 TCGA-Q1-A73O-01 11 62286537 62286537 G A AHNAK Nonsense_Mutation p.Q5118* 0.21 TCGA-Q1-A73O-01 11 62620500 62620500 C T SLC3A2 5'Flank 0.38 TCGA-Q1-A73O-01 11 63258427 63258427 G A HRASLS5 Missense_Mutation p.S27L 0.29 tolerated_low_confidence(0.25) benign(0) TCGA-Q1-A73O-01 11 63439031 63439031 G T ATL3 5'UTR 0.17 TCGA-Q1-A73O-01 11 63488456 63488456 G A RTN3 Missense_Mutation p.E828K 0.19 deleterious(0) possibly_damaging(0.717) TCGA-Q1-A73O-01 11 63961973 63961973 C G STIP1 Missense_Mutation p.F128L 0.17 deleterious(0.04) benign(0.001) TCGA-Q1-A73O-01 11 6412747 6412747 C G SMPD1 Nonsense_Mutation p.S151* 0.32 TCGA-Q1-A73O-01 11 64373797 64373797 G A NRXN2 3'UTR 0.23 TCGA-Q1-A73O-01 11 64557881 64557881 G A MAP4K2 Silent p.L716L 0.13 TCGA-Q1-A73O-01 11 64847036 64847036 G C CDCA5 Missense_Mutation p.S156C 0.22 deleterious(0) probably_damaging(0.963) TCGA-Q1-A73O-01 11 64847126 64847126 G A CDCA5 Missense_Mutation p.S126F 0.20 tolerated(0.35) benign(0.038) TCGA-Q1-A73O-01 11 64850990 64850990 G A CDCA5 Silent p.I58I 0.13 TCGA-Q1-A73O-01 11 64940071 64940071 G A SPDYC Missense_Mutation p.E171K 0.19 tolerated(0.06) probably_damaging(1) TCGA-Q1-A73O-01 11 64950299 64950299 G C CAPN1 Missense_Mutation p.E43Q 0.24 tolerated(0.06) benign(0.027) TCGA-Q1-A73O-01 11 65266716 65266716 G A MALAT1 RNA 0.32 TCGA-Q1-A73O-01 11 65422192 65422192 T A RELA Missense_Mutation p.E438V 0.25 deleterious(0.01) possibly_damaging(0.889) TCGA-Q1-A73O-01 11 65422193 65422193 C G RELA Missense_Mutation p.E438Q 0.25 tolerated(0.06) probably_damaging(0.927) TCGA-Q1-A73O-01 11 65422501 65422501 C T RELA Intron 0.38 TCGA-Q1-A73O-01 11 65423342 65423345 CTTC TTT RELA Frame_Shift_Del p.M313Ifs*43 0.22 TCGA-Q1-A73O-01 11 65423365 65423365 C T RELA Missense_Mutation p.E307K 0.20 tolerated(0.92) benign(0.069) TCGA-Q1-A73O-01 11 65429492 65429492 G A RELA Silent p.F34F 0.41 TCGA-Q1-A73O-01 11 65546419 65546419 C G AP5B1 Silent p.L515L 0.24 TCGA-Q1-A73O-01 11 65632706 65632706 G A MUS81 Missense_Mutation p.E473K 0.17 deleterious(0) benign(0.201) TCGA-Q1-A73O-01 11 65659801 65659801 G A FOSL1 3'UTR 0.19 TCGA-Q1-A73O-01 11 6568297 6568297 G A DNHD1 Missense_Mutation p.G2043E 0.23 probably_damaging(1) TCGA-Q1-A73O-01 11 66099733 66099733 C T RIN1 3'UTR 0.23 TCGA-Q1-A73O-01 11 66293630 66293630 C T BBS1 Missense_Mutation p.R383W 0.33 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 11 6631824 6631824 G A ILK Silent p.E447E 0.25 TCGA-Q1-A73O-01 11 66326743 66326743 C G CTSF 3'Flank 0.29 TCGA-Q1-A73O-01 11 6643101 6643101 G C DCHS1 Nonsense_Mutation p.S3269* 0.29 TCGA-Q1-A73O-01 11 66457557 66457557 G A SPTBN2 Silent p.L1921L 0.23 TCGA-Q1-A73O-01 11 67168224 67168224 G A PPP1CA Silent p.F129F 0.22 TCGA-Q1-A73O-01 11 67402720 67402720 C T TBX10 Missense_Mutation p.G8S 0.30 tolerated_low_confidence(0.49) benign(0.02) TCGA-Q1-A73O-01 11 67432942 67432942 C G ALDH3B2 Missense_Mutation p.E174Q 0.28 tolerated(0.08) possibly_damaging(0.863) TCGA-Q1-A73O-01 11 67815128 67815128 C T TCIRG1 Silent p.F440F 0.31 TCGA-Q1-A73O-01 11 68773160 68773160 G A MRGPRF Silent p.F206F 0.40 TCGA-Q1-A73O-01 11 70171018 70171018 G A PPFIA1 Silent p.V144V 0.26 TCGA-Q1-A73O-01 11 70222689 70222689 G A PPFIA1 Missense_Mutation p.D1123N 0.35 deleterious(0) possibly_damaging(0.573) TCGA-Q1-A73O-01 11 71949157 71949157 C T INPPL1 Silent p.I1208I 0.27 TCGA-Q1-A73O-01 11 73745582 73745582 C T C2CD3 3'UTR 0.24 TCGA-Q1-A73O-01 11 73872475 73872475 G A C2CD3 Missense_Mutation p.S151L 0.17 deleterious(0.01) benign(0.238) TCGA-Q1-A73O-01 11 73881827 73881827 C T C2CD3 Missense_Mutation p.R4Q 0.34 tolerated(0.08) unknown(0) TCGA-Q1-A73O-01 11 74053662 74053662 G A PGM2L1 Silent p.F492F 0.30 TCGA-Q1-A73O-01 11 74208931 74208931 C T LIPT2 5'Flank 0.33 TCGA-Q1-A73O-01 11 74323927 74323927 G A POLD3 Silent p.V88V 0.25 TCGA-Q1-A73O-01 11 74660204 74660204 G A XRRA1 5'UTR 0.28 TCGA-Q1-A73O-01 11 75776812 75776812 C T UVRAG Silent p.L429L 0.26 TCGA-Q1-A73O-01 11 77033955 77033955 C G PAK1 3'Flank 0.27 TCGA-Q1-A73O-01 11 77034218 77034218 G A PAK1 3'UTR 0.26 TCGA-Q1-A73O-01 11 77929934 77929934 G C GAB2 3'UTR 0.19 TCGA-Q1-A73O-01 11 794835 794835 G A SLC25A22 Silent p.I29I 0.19 TCGA-Q1-A73O-01 11 7982476 7982476 C A NLRP10 Missense_Mutation p.G228V 0.31 deleterious(0.03) probably_damaging(0.932) TCGA-Q1-A73O-01 11 801116 801116 G C PIDD Silent p.L545L 0.34 TCGA-Q1-A73O-01 11 8125055 8125055 G C TUB 3'UTR 0.32 TCGA-Q1-A73O-01 11 8125200 8125200 G A TUB 3'UTR 0.21 TCGA-Q1-A73O-01 11 8125263 8125263 G A TUB 3'UTR 0.16 TCGA-Q1-A73O-01 11 85435306 85435306 G A SYTL2 Nonsense_Mutation p.Q732* 0.22 TCGA-Q1-A73O-01 11 85445123 85445123 G A SYTL2 Missense_Mutation p.P416S 0.31 tolerated(0.17) benign(0.371) TCGA-Q1-A73O-01 11 86661930 86661930 C G FZD4 3'UTR 0.14 TCGA-Q1-A73O-01 11 8718158 8718158 C T ST5 Silent p.E1036E 0.24 TCGA-Q1-A73O-01 11 8934037 8934037 G C AKIP1 Missense_Mutation p.R87T 0.25 tolerated(0.08) possibly_damaging(0.888) TCGA-Q1-A73O-01 11 8969995 8969995 C T TMEM9B Missense_Mutation p.D157N 0.18 tolerated(0.17) benign(0.048) TCGA-Q1-A73O-01 11 89883683 89883683 G A NAALAD2 Missense_Mutation p.E173K 0.15 deleterious(0.02) benign(0.08) TCGA-Q1-A73O-01 11 89883714 89883714 G C NAALAD2 Missense_Mutation p.G183A 0.13 tolerated(0.2) benign(0.11) TCGA-Q1-A73O-01 11 93517725 93517725 G A MED17 Missense_Mutation p.E16K 0.36 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 11 94316638 94316638 C G PIWIL4 Missense_Mutation p.Q180E 0.25 deleterious(0.02) benign(0.007) TCGA-Q1-A73O-01 11 95825810 95825810 G C MAML2 Nonsense_Mutation p.S462* 0.33 TCGA-Q1-A73O-01 12 100451410 100451410 C T UHRF1BP1L Missense_Mutation p.M1121I 0.23 tolerated(0.39) benign(0.027) TCGA-Q1-A73O-01 12 100704857 100704857 G A SCYL2 Silent p.V172V 0.37 TCGA-Q1-A73O-01 12 100813924 100813924 C T SLC17A8 Missense_Mutation p.S586L 0.19 deleterious_low_confidence(0.04) benign(0.05) TCGA-Q1-A73O-01 12 101711383 101711383 G C UTP20 Missense_Mutation p.E894Q 0.26 tolerated(0.09) benign(0.397) TCGA-Q1-A73O-01 12 102183783 102183783 C T GNPTAB Missense_Mutation p.D86N 0.23 deleterious(0.01) probably_damaging(0.933) TCGA-Q1-A73O-01 12 104480731 104480731 G C HCFC2 Missense_Mutation p.L390F 0.31 deleterious(0) benign(0.353) TCGA-Q1-A73O-01 12 104698824 104698824 C G EID3 3'UTR 0.14 TCGA-Q1-A73O-01 12 105321797 105321797 G A SLC41A2 Missense_Mutation p.A170V 0.18 deleterious(0.04) possibly_damaging(0.52) TCGA-Q1-A73O-01 12 105433558 105433558 C G ALDH1L2 Missense_Mutation p.E660Q 0.33 tolerated(0.25) benign(0.005) TCGA-Q1-A73O-01 12 106632414 106632414 G C CKAP4 3'UTR 0.31 TCGA-Q1-A73O-01 12 10762468 10762468 C T MAGOHB Missense_Mutation p.D76N 0.23 deleterious(0) probably_damaging(0.962) TCGA-Q1-A73O-01 12 108919340 108919340 G C SART3 Nonsense_Mutation p.S806* 0.36 TCGA-Q1-A73O-01 12 109634908 109634908 C T ACACB Silent p.L859L 0.21 TCGA-Q1-A73O-01 12 109893940 109893940 C T KCTD10 Missense_Mutation p.E236K 0.26 deleterious(0) possibly_damaging(0.688) TCGA-Q1-A73O-01 12 110013877 110013877 C G MVK Silent p.L51L 0.23 TCGA-Q1-A73O-01 12 110208032 110208032 C T FAM222A 3'UTR 0.29 TCGA-Q1-A73O-01 12 110208043 110208043 C T FAM222A 3'UTR 0.25 TCGA-Q1-A73O-01 12 110208054 110208054 C T FAM222A 3'UTR 0.25 TCGA-Q1-A73O-01 12 110208165 110208165 C G FAM222A 3'UTR 0.33 TCGA-Q1-A73O-01 12 110236473 110236473 G A TRPV4 Silent p.L366L 0.34 TCGA-Q1-A73O-01 12 110370926 110370926 C T GIT2 Missense_Mutation p.E713K 0.26 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 12 110480317 110480317 C T C12orf76 Intron 0.38 TCGA-Q1-A73O-01 12 113537812 113537812 G A RASAL1 Silent p.L781L 0.31 TCGA-Q1-A73O-01 12 113553053 113553053 G A RASAL1 Silent p.L340L 0.32 TCGA-Q1-A73O-01 12 113758221 113758221 G A SLC8B1 Silent p.F203F 0.19 TCGA-Q1-A73O-01 12 117175742 117175742 G C C12orf49 5'UTR 0.20 TCGA-Q1-A73O-01 12 117584046 117584046 G A FBXO21 Missense_Mutation p.S578L 0.20 tolerated(0.15) benign(0.229) TCGA-Q1-A73O-01 12 119540159 119540159 C G SRRM4 Missense_Mutation p.R84G 0.18 deleterious_low_confidence(0) unknown(0) TCGA-Q1-A73O-01 12 120118157 120118157 G A PRKAB1 3'UTR 0.29 TCGA-Q1-A73O-01 12 120123653 120123653 C T CIT 3'UTR 0.44 TCGA-Q1-A73O-01 12 120260769 120260769 C G CIT Missense_Mutation p.L322F 0.21 tolerated(0.28) benign(0.31) TCGA-Q1-A73O-01 12 120634585 120634585 G C RPLP0 Silent p.L315L 0.25 TCGA-Q1-A73O-01 12 120650088 120650088 G A PXN 3'UTR 0.29 TCGA-Q1-A73O-01 12 120750316 120750316 C G SIRT4 Missense_Mutation p.F185L 0.26 tolerated(0.94) benign(0.001) TCGA-Q1-A73O-01 12 120750384 120750384 C T SIRT4 Missense_Mutation p.S208L 0.12 tolerated(0.08) benign(0.056) TCGA-Q1-A73O-01 12 121093965 121093965 G A CABP1 Intron 0.30 TCGA-Q1-A73O-01 12 121471367 121471367 C G OASL Silent p.L126L 0.22 TCGA-Q1-A73O-01 12 121676298 121676298 C G CAMKK2 3'UTR 0.22 TCGA-Q1-A73O-01 12 121676417 121676417 C G CAMKK2 3'UTR 0.20 TCGA-Q1-A73O-01 12 121756208 121756208 C G ANAPC5 Missense_Mutation p.E589Q 0.25 tolerated(0.24) benign(0.017) TCGA-Q1-A73O-01 12 121757584 121757584 C G ANAPC5 Missense_Mutation p.R518T 0.21 deleterious(0.01) benign(0.294) TCGA-Q1-A73O-01 12 122756694 122756694 G C CLIP1 3'Flank 0.35 TCGA-Q1-A73O-01 12 122763443 122763443 G C CLIP1 Nonsense_Mutation p.S1271* 0.22 TCGA-Q1-A73O-01 12 122958743 122958743 G C ZCCHC8 Silent p.L475L 0.18 TCGA-Q1-A73O-01 12 123875255 123875255 C T SETD8 Nonsense_Mutation p.Q71* 0.33 TCGA-Q1-A73O-01 12 123956984 123956984 C G RILPL1 3'UTR 0.40 TCGA-Q1-A73O-01 12 124371818 124371818 G A DNAH10 Missense_Mutation p.E2867K 0.19 probably_damaging(0.938) TCGA-Q1-A73O-01 12 125587612 125587612 C G AACS Nonsense_Mutation p.S251* 0.25 TCGA-Q1-A73O-01 12 129360521 129360521 G C GLT1D1 Missense_Mutation p.R44P 0.19 tolerated(1) benign(0) TCGA-Q1-A73O-01 12 133297420 133297420 C T PGAM5 3'UTR 0.35 TCGA-Q1-A73O-01 12 133365775 133365775 C T GOLGA3 Silent p.L883L 0.41 TCGA-Q1-A73O-01 12 133383849 133383849 C G GOLGA3 Missense_Mutation p.E402Q 0.30 tolerated(0.22) probably_damaging(0.936) TCGA-Q1-A73O-01 12 133683273 133683273 A T ZNF140 3'UTR 0.32 TCGA-Q1-A73O-01 12 133810919 133810919 C G ANHX Silent p.L8L 0.28 TCGA-Q1-A73O-01 12 14923746 14923746 C T HIST4H4 Silent p.L91L 0.28 TCGA-Q1-A73O-01 12 14928511 14928511 G C H2AFJ 3'UTR 0.24 TCGA-Q1-A73O-01 12 15773554 15773554 C T EPS8 3'UTR 0.21 TCGA-Q1-A73O-01 12 16753787 16753787 G C LMO3 Nonsense_Mutation p.S3* 0.21 TCGA-Q1-A73O-01 12 18515721 18515721 G C PIK3C2G Intron 0.23 TCGA-Q1-A73O-01 12 1897561 1897561 C G ADIPOR2 3'UTR 0.25 TCGA-Q1-A73O-01 12 19475477 19475477 C T PLEKHA5 Missense_Mutation p.S775L 0.28 deleterious(0.04) benign(0.371) TCGA-Q1-A73O-01 12 19522680 19522680 C G PLEKHA5 Missense_Mutation p.Q1270E 0.15 tolerated(0.27) benign(0.132) TCGA-Q1-A73O-01 12 19522727 19522727 G C PLEKHA5 3'UTR 0.21 TCGA-Q1-A73O-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.28 TCGA-Q1-A73O-01 12 2062277 2062277 C T DCP1B Missense_Mutation p.E277K 0.45 deleterious(0.03) probably_damaging(0.971) TCGA-Q1-A73O-01 12 21629873 21629873 G C RECQL Silent p.L307L 0.29 TCGA-Q1-A73O-01 12 21668697 21668697 G C GOLT1B 3'UTR 0.22 TCGA-Q1-A73O-01 12 24995103 24995103 G A BCAT1 Nonsense_Mutation p.Q256* 0.09 TCGA-Q1-A73O-01 12 28544303 28544303 G C CCDC91 Missense_Mutation p.E241Q 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-Q1-A73O-01 12 31842023 31842023 C G AMN1 Silent p.L207L 0.14 TCGA-Q1-A73O-01 12 32908137 32908137 G C YARS2 Silent p.L224L 0.35 TCGA-Q1-A73O-01 12 419064 419064 C T KDM5A Missense_Mutation p.E1095K 0.30 tolerated(0.06) benign(0.076) TCGA-Q1-A73O-01 12 419125 419125 C T KDM5A Silent p.L1074L 0.27 TCGA-Q1-A73O-01 12 44915918 44915918 C T NELL2 Silent p.E730E 0.22 TCGA-Q1-A73O-01 12 4648044 4648044 G C RAD51AP1 5'Flank 0.28 TCGA-Q1-A73O-01 12 47629733 47629733 C T PCED1B Missense_Mutation p.S296F 0.42 tolerated(0.19) benign(0.001) TCGA-Q1-A73O-01 12 48369281 48369281 G A COL2A1 Silent p.P1235P 0.30 TCGA-Q1-A73O-01 12 49047778 49047778 G A KANSL2 3'UTR 0.30 TCGA-Q1-A73O-01 12 49233831 49233831 C T DDX23 Missense_Mutation p.D127N 0.20 tolerated(0.14) unknown(0) TCGA-Q1-A73O-01 12 49399151 49399151 G C PRKAG1 Missense_Mutation p.L92V 0.27 tolerated_low_confidence(1) benign(0) TCGA-Q1-A73O-01 12 49421925 49421925 C T KMT2D Splice_Site p.X4795_splice 0.34 TCGA-Q1-A73O-01 12 49578810 49578810 C T TUBA1A Missense_Mutation p.E447K 0.29 deleterious_low_confidence(0.03) unknown(0) TCGA-Q1-A73O-01 12 49666530 49666530 G A TUBA1C Silent p.E290E 0.19 TCGA-Q1-A73O-01 12 51128868 51128868 G A DIP2B Silent p.V1352V 0.40 TCGA-Q1-A73O-01 12 51382141 51382141 C T SLC11A2 Silent p.L580L 0.27 TCGA-Q1-A73O-01 12 51639742 51639742 C G SMAGP Missense_Mutation p.E93Q 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-Q1-A73O-01 12 52827903 52827903 G C KRT75 Silent p.L62L 0.25 TCGA-Q1-A73O-01 12 53438312 53438312 C T TENC1 5'Flank 0.33 TCGA-Q1-A73O-01 12 54369373 54369373 G A HOXC11 3'UTR 0.16 TCGA-Q1-A73O-01 12 54975847 54975847 C T PPP1R1A Missense_Mutation p.E106K 0.30 deleterious(0.02) benign(0.243) TCGA-Q1-A73O-01 12 55615615 55615615 G C OR10A7 Missense_Mutation p.E269D 0.10 tolerated(0.49) benign(0.01) TCGA-Q1-A73O-01 12 55641759 55641759 C G OR6C74 Missense_Mutation p.Q230E 0.25 tolerated_low_confidence(0.09) probably_damaging(0.991) TCGA-Q1-A73O-01 12 56351193 56351193 G A PMEL Silent p.L298L 0.32 TCGA-Q1-A73O-01 12 56486842 56486842 G C ERBB3 Missense_Mutation p.G419A 0.23 tolerated(0.17) benign(0.277) TCGA-Q1-A73O-01 12 56500968 56500968 C T RP11-603J24.9 Intron 0.32 TCGA-Q1-A73O-01 12 56531321 56531321 G A ESYT1 Silent p.L669L 0.22 TCGA-Q1-A73O-01 12 56737278 56737278 C T STAT2 Silent p.P817P 0.22 TCGA-Q1-A73O-01 12 56868639 56868639 G C GLS2 Silent p.L346L 0.38 TCGA-Q1-A73O-01 12 57410282 57410282 G C TAC3 5'UTR 0.28 TCGA-Q1-A73O-01 12 57485124 57485124 G A NAB2 Silent p.Q100Q 0.31 TCGA-Q1-A73O-01 12 57625512 57625512 G C SHMT2 Missense_Mutation p.E110Q 0.23 tolerated(0.14) benign(0.213) TCGA-Q1-A73O-01 12 57881806 57881806 C T MARS 5'UTR 0.41 TCGA-Q1-A73O-01 12 57881885 57881885 C G MARS Missense_Mutation p.F4L 0.26 tolerated(0.17) benign(0.206) TCGA-Q1-A73O-01 12 57920520 57920520 G C MBD6 Missense_Mutation p.G531A 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-Q1-A73O-01 12 58114731 58114731 C G OS9 3'UTR 0.12 TCGA-Q1-A73O-01 12 58240198 58240198 G A CTDSP2 Silent p.I7I 0.27 TCGA-Q1-A73O-01 12 59308076 59308076 G C LRIG3 Missense_Mutation p.S93C 0.24 tolerated(0.11) possibly_damaging(0.571) TCGA-Q1-A73O-01 12 62987016 62987016 G A MON2 3'UTR 0.26 TCGA-Q1-A73O-01 12 6472857 6472857 C G SCNN1A Missense_Mutation p.E205Q 0.20 tolerated(0.28) benign(0.044) TCGA-Q1-A73O-01 12 64849669 64849669 C T TBK1 Missense_Mutation p.H7Y 0.24 tolerated(1) benign(0) TCGA-Q1-A73O-01 12 64890164 64890164 G A TBK1 Missense_Mutation p.E580K 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-Q1-A73O-01 12 6638001 6638001 C G NCAPD2 Missense_Mutation p.F1152L 0.31 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 12 66786232 66786232 C T GRIP1 Missense_Mutation p.D722N 0.22 tolerated(0.12) benign(0.085) TCGA-Q1-A73O-01 12 6687053 6687053 C T CHD4 Silent p.Q1753Q 0.20 TCGA-Q1-A73O-01 12 670917 670917 G C B4GALNT3 3'UTR 0.22 TCGA-Q1-A73O-01 12 6711619 6711619 G C CHD4 Missense_Mutation p.P49A 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.539) TCGA-Q1-A73O-01 12 67706658 67706658 G A CAND1 3'UTR 0.17 TCGA-Q1-A73O-01 12 68054382 68054382 C T DYRK2 3'UTR 0.32 TCGA-Q1-A73O-01 12 69656167 69656167 G C CPSF6 Missense_Mutation p.R495T 0.26 deleterious(0.01) unknown(0) TCGA-Q1-A73O-01 12 6979700 6979700 C G TPI1 3'UTR 0.35 TCGA-Q1-A73O-01 12 69968496 69968496 G A FRS2 Missense_Mutation p.E430K 0.27 deleterious(0.04) benign(0.112) TCGA-Q1-A73O-01 12 69972893 69972893 C G FRS2 3'UTR 0.29 TCGA-Q1-A73O-01 12 7016621 7016621 G A LRRC23 Intron 0.27 TCGA-Q1-A73O-01 12 7045670 7045670 C T ATN1 Missense_Mutation p.P414S 0.22 probably_damaging(0.992) TCGA-Q1-A73O-01 12 7073317 7073317 C G PTPN6 3'Flank 0.19 TCGA-Q1-A73O-01 12 70824549 70824549 G C KCNMB4 3'UTR 0.21 TCGA-Q1-A73O-01 12 71050481 71050481 C G PTPRR Intron 0.23 TCGA-Q1-A73O-01 12 71531992 71531992 G C TSPAN8 Missense_Mutation p.L94V 0.28 tolerated(0.08) benign(0.12) TCGA-Q1-A73O-01 12 73058096 73058096 C T TRHDE 3'UTR 0.23 TCGA-Q1-A73O-01 12 7475902 7475902 G C ACSM4 Missense_Mutation p.D400H 0.27 deleterious(0.04) benign(0.361) TCGA-Q1-A73O-01 12 752531 752531 G A NINJ2 Intron 0.24 TCGA-Q1-A73O-01 12 75892496 75892496 C G GLIPR1 Silent p.V214V 0.20 TCGA-Q1-A73O-01 12 76424317 76424317 C T PHLDA1 Silent p.%3D 0.14 TCGA-Q1-A73O-01 12 76462755 76462755 C G NAP1L1 Missense_Mutation p.D13H 0.31 deleterious(0.01) benign(0.102) TCGA-Q1-A73O-01 12 78582497 78582497 G C NAV3 Missense_Mutation p.E1977Q 0.27 tolerated(0.09) probably_damaging(0.936) TCGA-Q1-A73O-01 12 81111256 81111256 G C MYF5 Silent p.L138L 0.29 TCGA-Q1-A73O-01 12 85546833 85546833 C G LRRIQ1 Nonsense_Mutation p.S1484* 0.21 TCGA-Q1-A73O-01 12 89744761 89744761 C G DUSP6 Missense_Mutation p.E148Q 0.34 tolerated(0.06) benign(0.117) TCGA-Q1-A73O-01 12 9242999 9242999 G A A2M Missense_Mutation p.A850V 0.09 tolerated(0.26) benign(0.019) TCGA-Q1-A73O-01 12 93226593 93226593 C T EEA1 Missense_Mutation p.D317N 0.15 deleterious(0.01) possibly_damaging(0.57) TCGA-Q1-A73O-01 12 93772007 93772007 C G NUDT4 5'UTR 0.08 TCGA-Q1-A73O-01 12 94691157 94691157 C T PLXNC1 Silent p.F1344F 0.23 TCGA-Q1-A73O-01 12 94697586 94697586 G C PLXNC1 Missense_Mutation p.E1481Q 0.23 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 12 96641056 96641056 G A ELK3 Silent p.V182V 0.24 TCGA-Q1-A73O-01 12 977104 977104 C G WNK1 Intron 0.20 TCGA-Q1-A73O-01 12 994616 994616 C T WNK1 Missense_Mutation p.S1549F 0.19 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-Q1-A73O-01 13 100622612 100622612 C T ZIC5 Missense_Mutation p.E440K 0.21 deleterious(0) benign(0.402) TCGA-Q1-A73O-01 13 103282469 103282469 G A TPP2 Missense_Mutation p.D390N 0.13 deleterious(0.01) possibly_damaging(0.832) TCGA-Q1-A73O-01 13 103698551 103698551 C G SLC10A2 Missense_Mutation p.E327Q 0.23 tolerated(0.09) benign(0.002) TCGA-Q1-A73O-01 13 107196191 107196191 G C ARGLU1 3'UTR 0.28 TCGA-Q1-A73O-01 13 107219979 107219979 C T ARGLU1 Missense_Mutation p.E97K 0.31 deleterious(0.02) possibly_damaging(0.502) TCGA-Q1-A73O-01 13 108922315 108922315 G A TNFSF13B Silent p.L24L 0.17 TCGA-Q1-A73O-01 13 113556531 113556531 G C MCF2L Missense_Mutation p.W5C 0.20 deleterious_low_confidence(0) benign(0.001) TCGA-Q1-A73O-01 13 113835480 113835480 C T PCID2 Missense_Mutation p.M304I 0.24 deleterious(0.04) benign(0.015) TCGA-Q1-A73O-01 13 113915001 113915001 G A CUL4A Missense_Mutation p.M704I 0.20 deleterious(0) probably_damaging(0.99) TCGA-Q1-A73O-01 13 114549990 114549990 G A GAS6 Intron 0.27 TCGA-Q1-A73O-01 13 20633604 20633604 G C ZMYM2 Missense_Mutation p.E881Q 0.24 tolerated(0.66) benign(0.041) TCGA-Q1-A73O-01 13 21950527 21950527 C T ZDHHC20 3'UTR 0.18 TCGA-Q1-A73O-01 13 22275667 22275667 C T FGF9 3'UTR 0.17 TCGA-Q1-A73O-01 13 23777968 23777968 C T SGCG Silent p.I45I 0.21 TCGA-Q1-A73O-01 13 24893016 24893016 G A C1QTNF9 Missense_Mutation p.R76Q 0.20 tolerated(0.18) benign(0.007) TCGA-Q1-A73O-01 13 25743647 25743647 G C AMER2 3'UTR 0.27 TCGA-Q1-A73O-01 13 28868521 28868521 G A PAN3 3'Flank 0.32 TCGA-Q1-A73O-01 13 28979985 28979985 C T FLT1 Missense_Mutation p.D495N 0.27 tolerated(0.49) benign(0.005) TCGA-Q1-A73O-01 13 30071452 30071452 G C MTUS2 Missense_Mutation p.K1229N 0.18 deleterious(0) possibly_damaging(0.588) TCGA-Q1-A73O-01 13 36239230 36239230 C G NBEA Missense_Mutation p.P2770A 0.24 tolerated(0.39) benign(0.004) TCGA-Q1-A73O-01 13 37603941 37603941 G C SUPT20H Missense_Mutation p.I318M 0.19 deleterious(0.01) benign(0.01) TCGA-Q1-A73O-01 13 42876786 42876786 G A AKAP11 Missense_Mutation p.E1302K 0.24 tolerated(0.05) benign(0.162) TCGA-Q1-A73O-01 13 48942733 48942733 C G RB1 Missense_Mutation p.P374A 0.21 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 13 52548749 52548749 C A ATP7B Missense_Mutation p.D203Y 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-Q1-A73O-01 13 52604690 52604690 G C UTP14C Missense_Mutation p.D584H 0.20 deleterious(0.01) probably_damaging(0.961) TCGA-Q1-A73O-01 13 53035894 53035894 G C CKAP2 Missense_Mutation p.K312N 0.37 tolerated(0.08) benign(0.117) TCGA-Q1-A73O-01 13 74266118 74266118 C G KLF12 3'UTR 0.13 TCGA-Q1-A73O-01 13 74266930 74266930 C T KLF12 3'UTR 0.25 TCGA-Q1-A73O-01 13 74268136 74268136 C G KLF12 3'UTR 0.31 TCGA-Q1-A73O-01 13 74268316 74268316 C G KLF12 3'UTR 0.25 TCGA-Q1-A73O-01 13 77670497 77670497 G A MYCBP2 Missense_Mutation p.R3264C 0.30 probably_damaging(0.992) TCGA-Q1-A73O-01 13 95055592 95055592 G A GPC6 3'UTR 0.26 TCGA-Q1-A73O-01 13 95364171 95364171 C G SOX21 Missense_Mutation p.E45Q 0.24 deleterious(0.04) possibly_damaging(0.881) TCGA-Q1-A73O-01 13 95696671 95696671 C A ABCC4 Nonsense_Mutation p.E1160* 0.17 TCGA-Q1-A73O-01 13 98664577 98664577 G A IPO5 Silent p.L729L 0.32 TCGA-Q1-A73O-01 13 99083327 99083327 G A FARP1 Missense_Mutation p.E646K 0.33 deleterious(0.02) benign(0.036) TCGA-Q1-A73O-01 13 99101831 99101831 C T FARP1 3'UTR 0.21 TCGA-Q1-A73O-01 13 99537987 99537987 C T DOCK9 Silent p.K745K 0.35 TCGA-Q1-A73O-01 14 102467326 102467326 G C DYNC1H1 Silent p.L1370L 0.26 TCGA-Q1-A73O-01 14 102964478 102964478 G A TECPR2 Missense_Mutation p.G1374S 0.23 deleterious(0) probably_damaging(0.994) TCGA-Q1-A73O-01 14 103969412 103969412 G A MARK3 Missense_Mutation p.D704N 0.37 tolerated(0.11) possibly_damaging(0.818) TCGA-Q1-A73O-01 14 103986313 103986313 G C CKB Nonsense_Mutation p.S345* 0.15 TCGA-Q1-A73O-01 14 104026644 104026644 C G BAG5 Missense_Mutation p.M327I 0.26 tolerated_low_confidence(0.12) benign(0.073) TCGA-Q1-A73O-01 14 104028264 104028264 C G BAG5 Missense_Mutation p.W27C 0.22 deleterious_low_confidence(0) benign(0) TCGA-Q1-A73O-01 14 105270844 105270844 G A ZBTB42 3'UTR 0.22 TCGA-Q1-A73O-01 14 105452740 105452740 C G C14orf79 5'UTR 0.32 TCGA-Q1-A73O-01 14 105452872 105452872 G C C14orf79 Missense_Mutation p.S35T 0.31 tolerated(0.17) benign(0.003) TCGA-Q1-A73O-01 14 106452779 106452779 C T IGHV1-2 Silent p.Q81Q 0.25 TCGA-Q1-A73O-01 14 106830007 106830007 G A IGHV4-34 Silent p.F13F 0.22 TCGA-Q1-A73O-01 14 20926584 20926584 C G TMEM55B 3'UTR 0.31 TCGA-Q1-A73O-01 14 21026764 21026764 C T RNASE9 5'UTR 0.13 TCGA-Q1-A73O-01 14 21831637 21831637 G A SUPT16H Missense_Mutation p.S420F 0.26 deleterious(0.03) benign(0.243) TCGA-Q1-A73O-01 14 22237083 22237083 G C TRAV6 Missense_Mutation p.E54Q 0.30 deleterious(0.01) probably_damaging(0.918) TCGA-Q1-A73O-01 14 22447075 22447075 G A TRAV8-6 Missense_Mutation p.R19K 0.35 tolerated(0.29) benign(0.02) TCGA-Q1-A73O-01 14 23551033 23551033 G A ACIN1 Missense_Mutation p.S208L 0.28 probably_damaging(0.977) TCGA-Q1-A73O-01 14 23902431 23902431 C G MYH7 Silent p.V69V 0.21 TCGA-Q1-A73O-01 14 23992487 23992487 G A ZFHX2 Missense_Mutation p.R2222C 0.31 unknown(0) TCGA-Q1-A73O-01 14 24658702 24658702 G A TM9SF1 Silent p.F580F 0.21 TCGA-Q1-A73O-01 14 24798280 24798280 G C ADCY4 Missense_Mutation p.S504C 0.24 tolerated(0.06) possibly_damaging(0.695) TCGA-Q1-A73O-01 14 24886443 24886443 G C NYNRIN Missense_Mutation p.D1830H 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-Q1-A73O-01 14 25042796 25042796 C G CTSG 3'UTR 0.17 TCGA-Q1-A73O-01 14 26916256 26916256 C G NOVA1 3'UTR 0.43 TCGA-Q1-A73O-01 14 32560284 32560284 C T ARHGAP5 Nonsense_Mutation p.Q137* 0.23 TCGA-Q1-A73O-01 14 34268968 34268968 G A NPAS3 Silent p.E485E 0.30 TCGA-Q1-A73O-01 14 35548163 35548163 C G FAM177A1 Missense_Mutation p.S146C 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-Q1-A73O-01 14 36003406 36003406 C T INSM2 5'UTR 0.32 TCGA-Q1-A73O-01 14 36211632 36211632 C G RALGAPA1 Missense_Mutation p.C464S 0.30 tolerated(0.75) benign(0.003) TCGA-Q1-A73O-01 14 45432442 45432442 C G FAM179B Missense_Mutation p.S273C 0.22 tolerated_low_confidence(0.08) possibly_damaging(0.698) TCGA-Q1-A73O-01 14 45585242 45585242 C T FKBP3 3'UTR 0.14 TCGA-Q1-A73O-01 14 47309670 47309670 G C MDGA2 3'UTR 0.27 TCGA-Q1-A73O-01 14 50050372 50050372 G C RPS29 Intron 0.11 TCGA-Q1-A73O-01 14 50089367 50089367 G A MGAT2 3'UTR 0.22 TCGA-Q1-A73O-01 14 50154889 50154889 G A POLE2 Silent p.L11L 0.33 TCGA-Q1-A73O-01 14 50312951 50312951 G C NEMF Silent p.V88V 0.26 TCGA-Q1-A73O-01 14 51186603 51186603 G C RP11-248J18.3 3'Flank 0.19 TCGA-Q1-A73O-01 14 52344320 52344320 C T GNG2 Intron 0.41 TCGA-Q1-A73O-01 14 52344329 52344329 C G GNG2 Intron 0.50 TCGA-Q1-A73O-01 14 52344355 52344355 C G GNG2 Intron 0.43 TCGA-Q1-A73O-01 14 53324870 53324870 C T FERMT2 3'UTR 0.26 TCGA-Q1-A73O-01 14 56103923 56103923 G A KTN1 Silent p.Q519Q 0.31 TCGA-Q1-A73O-01 14 56103978 56103978 G C KTN1 Missense_Mutation p.D538H 0.31 deleterious(0.01) probably_damaging(0.979) TCGA-Q1-A73O-01 14 57671597 57671597 C T EXOC5 3'UTR 0.27 TCGA-Q1-A73O-01 14 58768399 58768399 G A ARID4A Silent p.V36V 0.17 TCGA-Q1-A73O-01 14 58831712 58831712 G A ARID4A Missense_Mutation p.E969K 0.29 deleterious(0) benign(0.297) TCGA-Q1-A73O-01 14 61438916 61438916 C T TRMT5 3'UTR 0.25 TCGA-Q1-A73O-01 14 62248994 62248994 C G SNAPC1 Silent p.V285V 0.37 TCGA-Q1-A73O-01 14 63246617 63246617 G A KCNH5 Silent p.I616I 0.41 TCGA-Q1-A73O-01 14 64473795 64473798 GATG AAT SYNE2 Frame_Shift_Del p.D1478Nfs*28 0.29 TCGA-Q1-A73O-01 14 64473815 64473815 G C SYNE2 Missense_Mutation p.K1484N 0.26 probably_damaging(0.975) TCGA-Q1-A73O-01 14 64542813 64542813 G A SYNE2 Missense_Mutation p.E3673K 0.23 probably_damaging(0.981) TCGA-Q1-A73O-01 14 64653259 64653259 G C SYNE2 Missense_Mutation p.E5892Q 0.21 benign(0.297) TCGA-Q1-A73O-01 14 64937860 64937860 C G AKAP5 3'UTR 0.31 TCGA-Q1-A73O-01 14 64990313 64990313 G C ZBTB1 Missense_Mutation p.L697F 0.38 deleterious(0.03) probably_damaging(0.996) TCGA-Q1-A73O-01 14 64990452 64990452 G C ZBTB1 3'UTR 0.23 TCGA-Q1-A73O-01 14 65259917 65259917 G T SPTB Silent p.R822R 0.45 TCGA-Q1-A73O-01 14 66188690 66188690 G C FUT8 Missense_Mutation p.E345Q 0.23 tolerated(0.32) benign(0.293) TCGA-Q1-A73O-01 14 69707600 69707600 G C EXD2 Splice_Site p.X550_splice 0.18 TCGA-Q1-A73O-01 14 71568837 71568837 C G PCNX Missense_Mutation p.S1907C 0.21 deleterious(0.03) probably_damaging(0.98) TCGA-Q1-A73O-01 14 72169169 72169169 G C SIPA1L1 Missense_Mutation p.G1198A 0.27 tolerated(0.07) possibly_damaging(0.607) TCGA-Q1-A73O-01 14 73490808 73490808 C G ZFYVE1 Missense_Mutation p.E137Q 0.22 tolerated(0.45) benign(0.014) TCGA-Q1-A73O-01 14 74388869 74388869 G C ZNF410 Missense_Mutation p.L427F 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-Q1-A73O-01 14 74409175 74409175 C G FAM161B Missense_Mutation p.R453T 0.27 deleterious(0.03) benign(0.193) TCGA-Q1-A73O-01 14 74823763 74823763 C G VRTN Missense_Mutation p.L93V 0.18 deleterious(0.04) probably_damaging(0.994) TCGA-Q1-A73O-01 14 75567840 75567840 C T NEK9 Silent p.L619L 0.20 TCGA-Q1-A73O-01 14 77872322 77872322 G C NOXRED1 Missense_Mutation p.S280C 0.30 deleterious(0) probably_damaging(0.935) TCGA-Q1-A73O-01 14 81297574 81297574 G C CEP128 Missense_Mutation p.F374L 0.20 tolerated(0.67) benign(0.009) TCGA-Q1-A73O-01 14 90734620 90734620 G C PSMC1 Missense_Mutation p.L248F 0.34 deleterious(0.02) possibly_damaging(0.737) TCGA-Q1-A73O-01 14 93760445 93760445 C G BTBD7 Missense_Mutation p.L307F 0.28 tolerated(0.06) probably_damaging(0.981) TCGA-Q1-A73O-01 15 100256544 100256544 C T DKFZP779J2370 3'UTR 0.27 TCGA-Q1-A73O-01 15 101569240 101569240 C T LRRK1 Silent p.L922L 0.17 TCGA-Q1-A73O-01 15 22928434 22928434 G A CYFIP1 Missense_Mutation p.R104K 0.24 deleterious(0.01) benign(0.012) TCGA-Q1-A73O-01 15 24922056 24922056 C G NPAP1 Missense_Mutation p.R348G 0.24 tolerated(0.17) probably_damaging(0.989) TCGA-Q1-A73O-01 15 27184442 27184442 C A GABRA5 Intron 0.24 TCGA-Q1-A73O-01 15 30665258 30665258 C T CHRFAM7A Missense_Mutation p.G84E 0.12 deleterious(0.05) benign(0.411) TCGA-Q1-A73O-01 15 32908246 32908246 G C ARHGAP11A 5'UTR 0.33 TCGA-Q1-A73O-01 15 34634298 34634298 C G NOP10 Silent p.P22P 0.32 TCGA-Q1-A73O-01 15 35149043 35149043 C T AQR Missense_Mutation p.E1470K 0.18 tolerated_low_confidence(0.21) benign(0) TCGA-Q1-A73O-01 15 35271657 35271657 G A AC114546.1 5'UTR 0.19 TCGA-Q1-A73O-01 15 40383311 40383311 C T BMF 3'UTR 0.24 TCGA-Q1-A73O-01 15 40627306 40627306 G C C15orf52 3'UTR 0.38 TCGA-Q1-A73O-01 15 40659864 40659864 G A DISP2 Silent p.L517L 0.35 TCGA-Q1-A73O-01 15 41643260 41643260 C T NUSAP1 Silent p.L127L 0.26 TCGA-Q1-A73O-01 15 41766883 41766883 C G RTF1 Missense_Mutation p.N423K 0.21 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 15 41815045 41815045 G C RPAP1 Nonsense_Mutation p.S887* 0.20 TCGA-Q1-A73O-01 15 42060395 42060395 G A MGA 3'UTR 0.28 TCGA-Q1-A73O-01 15 42107876 42107876 G C MAPKBP1 Missense_Mutation p.E464Q 0.12 deleterious(0.01) benign(0.239) TCGA-Q1-A73O-01 15 42503255 42503255 C G TMEM87A 3'UTR 0.31 TCGA-Q1-A73O-01 15 42631869 42631869 G C GANC Missense_Mutation p.D616H 0.24 probably_damaging(1) TCGA-Q1-A73O-01 15 43687352 43687352 G A TUBGCP4 Silent p.L354L 0.34 TCGA-Q1-A73O-01 15 43762075 43762075 G C TP53BP1 Missense_Mutation p.S457C 0.29 deleterious(0) probably_damaging(0.97) TCGA-Q1-A73O-01 15 43767799 43767799 G C TP53BP1 Missense_Mutation p.S350C 0.08 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 15 44028365 44028365 G A RNU6-354P 5'Flank 0.28 TCGA-Q1-A73O-01 15 44065085 44065085 C T ELL3 3'UTR 0.21 TCGA-Q1-A73O-01 15 44719943 44719943 G A CTDSPL2 5'UTR 0.32 TCGA-Q1-A73O-01 15 44817905 44817905 C G CTDSPL2 3'UTR 0.23 TCGA-Q1-A73O-01 15 44828835 44828835 G A EIF3J 5'Flank 0.27 TCGA-Q1-A73O-01 15 44858173 44858173 C T SPG11 Missense_Mutation p.R2293Q 0.17 deleterious(0.03) possibly_damaging(0.776) TCGA-Q1-A73O-01 15 45250686 45250686 C A C15orf43 Missense_Mutation p.L88I 0.22 deleterious(0) probably_damaging(0.933) TCGA-Q1-A73O-01 15 45393432 45393432 G C DUOX2 Silent p.V964V 0.42 TCGA-Q1-A73O-01 15 48779635 48779635 C T FBN1 Splice_Site p.X1113_splice 0.22 TCGA-Q1-A73O-01 15 49076266 49076266 G C CEP152 Missense_Mutation p.Q409E 0.29 tolerated(1) benign(0.297) TCGA-Q1-A73O-01 15 49085632 49085632 G A CEP152 Nonsense_Mutation p.Q240* 0.14 TCGA-Q1-A73O-01 15 50875324 50875324 C G TRPM7 Missense_Mutation p.D1507H 0.25 deleterious_low_confidence(0) benign(0.445) TCGA-Q1-A73O-01 15 52244147 52244147 C G LEO1 Missense_Mutation p.R502T 0.34 deleterious(0) probably_damaging(0.992) TCGA-Q1-A73O-01 15 52416673 52416673 G T GNB5 Silent p.L391L 0.24 TCGA-Q1-A73O-01 15 52892428 52892428 G T FAM214A Silent p.R849R 0.21 TCGA-Q1-A73O-01 15 52902402 52902402 C G FAM214A Missense_Mutation p.E237Q 0.26 tolerated(0.05) possibly_damaging(0.833) TCGA-Q1-A73O-01 15 59191016 59191016 G C SLTM Missense_Mutation p.S365C 0.24 deleterious(0) unknown(0) TCGA-Q1-A73O-01 15 59430493 59430493 G A MYO1E Nonsense_Mutation p.Q1052* 0.20 TCGA-Q1-A73O-01 15 59955924 59955924 C G BNIP2 3'UTR 0.27 TCGA-Q1-A73O-01 15 59956081 59956081 C G BNIP2 3'UTR 0.28 TCGA-Q1-A73O-01 15 62362249 62362249 G C C2CD4A 3'UTR 0.40 TCGA-Q1-A73O-01 15 63673957 63673957 G A CA12 5'UTR 0.15 TCGA-Q1-A73O-01 15 64367720 64367720 G C FAM96A Missense_Mutation p.S119C 0.35 deleterious(0) possibly_damaging(0.879) TCGA-Q1-A73O-01 15 64454326 64454326 C A PPIB Nonsense_Mutation p.E55* 0.22 TCGA-Q1-A73O-01 15 64974247 64974247 G C ZNF609 3'UTR 0.16 TCGA-Q1-A73O-01 15 65495766 65495766 C T CILP Missense_Mutation p.R321K 0.26 tolerated(0.31) benign(0.004) TCGA-Q1-A73O-01 15 66604206 66604206 G C DIS3L Missense_Mutation p.E235Q 0.22 tolerated(0.09) benign(0.186) TCGA-Q1-A73O-01 15 67457307 67457307 G A SMAD3 Nonsense_Mutation p.W94* 0.29 TCGA-Q1-A73O-01 15 70960113 70960113 C T UACA Silent p.Q970Q 0.31 TCGA-Q1-A73O-01 15 71128790 71128790 C T LARP6 Nonsense_Mutation p.W85* 0.26 TCGA-Q1-A73O-01 15 72502765 72502765 C T PKM Missense_Mutation p.D101N 0.26 tolerated(0.32) benign(0.003) TCGA-Q1-A73O-01 15 74630935 74630935 C G CYP11A1 Missense_Mutation p.E471Q 0.29 deleterious(0.03) probably_damaging(0.985) TCGA-Q1-A73O-01 15 75095301 75095301 C G CSK 3'UTR 0.28 TCGA-Q1-A73O-01 15 75682011 75682011 G A SIN3A Silent p.I1001I 0.19 TCGA-Q1-A73O-01 15 78213762 78213762 G A RP11-114H24.7 Intron 0.30 TCGA-Q1-A73O-01 15 79186509 79186509 G A MORF4L1 Missense_Mutation p.A286T 0.24 tolerated(0.2) benign(0.006) TCGA-Q1-A73O-01 15 79186545 79186545 G A MORF4L1 Missense_Mutation p.G298R 0.29 deleterious(0) probably_damaging(0.945) TCGA-Q1-A73O-01 15 79589971 79589971 C T ANKRD34C 3'UTR 0.38 TCGA-Q1-A73O-01 15 80445464 80445464 C G FAH Missense_Mutation p.S23W 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-Q1-A73O-01 15 80450338 80450338 G A FAH Intron 0.45 TCGA-Q1-A73O-01 15 81598323 81598323 C G IL16 Missense_Mutation p.I1165M 0.47 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 15 83499708 83499708 C G WHAMM Missense_Mutation p.Q667E 0.31 tolerated(1) benign(0.007) TCGA-Q1-A73O-01 15 83518297 83518297 G A HOMER2 3'UTR 0.23 TCGA-Q1-A73O-01 15 83807397 83807397 C G HDGFRP3 3'UTR 0.21 TCGA-Q1-A73O-01 15 86261378 86261378 G A AKAP13 Missense_Mutation p.E2001K 0.24 deleterious(0) probably_damaging(0.966) TCGA-Q1-A73O-01 15 86290817 86290817 C T AKAP13 3'Flank 0.19 TCGA-Q1-A73O-01 15 89719122 89719122 C T ABHD2 Silent p.F206F 0.29 TCGA-Q1-A73O-01 15 90437286 90437286 G A AP3S2 5'UTR 0.41 TCGA-Q1-A73O-01 15 91026761 91026761 C G IQGAP1 Missense_Mutation p.L1242V 0.23 tolerated(0.09) benign(0.003) TCGA-Q1-A73O-01 15 92706005 92706005 C T SLCO3A1 Silent p.L591L 0.29 TCGA-Q1-A73O-01 15 99502807 99502807 G T IGF1R 3'UTR 0.18 TCGA-Q1-A73O-01 15 99673536 99673536 G A SYNM 3'UTR 0.27 TCGA-Q1-A73O-01 16 10624530 10624530 C T EMP2 3'UTR 0.50 TCGA-Q1-A73O-01 16 1470076 1470076 G A C16orf91 Silent p.L313L 0.23 TCGA-Q1-A73O-01 16 1470400 1470400 G C C16orf91 Silent p.L239L 0.36 TCGA-Q1-A73O-01 16 15222200 15222200 C G RP11-1186N24.5 RNA 0.28 TCGA-Q1-A73O-01 16 15690681 15690681 G A KIAA0430 Missense_Mutation p.P1700S 0.18 tolerated_low_confidence(0.25) benign(0.031) TCGA-Q1-A73O-01 16 15706516 15706516 G A KIAA0430 Silent p.F1124F 0.22 TCGA-Q1-A73O-01 16 15843992 15843992 C T MYH11 Intron 0.11 TCGA-Q1-A73O-01 16 1838799 1838799 C T NUBP2 3'UTR 0.12 TCGA-Q1-A73O-01 16 1840628 1840628 G T IGFALS Silent p.L635L 0.29 TCGA-Q1-A73O-01 16 19089473 19089473 G C COQ7 Missense_Mutation p.R216T 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-Q1-A73O-01 16 21328903 21328903 C T CRYM-AS1 RNA 0.31 TCGA-Q1-A73O-01 16 2156550 2156550 G A PKD1 Silent p.F2446F 0.17 TCGA-Q1-A73O-01 16 2201870 2201870 C G RAB26 Silent p.L143L 0.36 TCGA-Q1-A73O-01 16 22339866 22339866 G A POLR3E Silent p.Q634Q 0.19 TCGA-Q1-A73O-01 16 22339899 22339899 G C POLR3E Missense_Mutation p.M645I 0.17 tolerated(0.19) benign(0) TCGA-Q1-A73O-01 16 2259701 2259701 C T BRICD5 Missense_Mutation p.E149K 0.29 tolerated(0.66) benign(0.076) TCGA-Q1-A73O-01 16 23116857 23116857 G A USP31 Missense_Mutation p.H332Y 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-Q1-A73O-01 16 2373502 2373502 G A ABCA3 Intron 0.30 TCGA-Q1-A73O-01 16 2376198 2376198 C T ABCA3 Silent p.L44L 0.33 TCGA-Q1-A73O-01 16 24166169 24166169 C G PRKCB Missense_Mutation p.F410L 0.29 deleterious(0) probably_damaging(0.963) TCGA-Q1-A73O-01 16 24942524 24942524 C T ARHGAP17 Missense_Mutation p.R699Q 0.27 deleterious_low_confidence(0.02) benign(0.238) TCGA-Q1-A73O-01 16 27475925 27475925 C T GTF3C1 Missense_Mutation p.R1863H 0.26 tolerated(0.05) possibly_damaging(0.482) TCGA-Q1-A73O-01 16 2813286 2813286 G A SRRM2 Silent p.V919V 0.19 TCGA-Q1-A73O-01 16 28137114 28137114 C T XPO6 Silent p.L554L 0.18 TCGA-Q1-A73O-01 16 28143700 28143700 C G XPO6 Missense_Mutation p.E521Q 0.20 tolerated(0.34) benign(0.009) TCGA-Q1-A73O-01 16 28893804 28893804 G A ATP2A1 Silent p.L119L 0.15 TCGA-Q1-A73O-01 16 28911970 28911970 C G ATP2A1 Missense_Mutation p.I611M 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-Q1-A73O-01 16 29675794 29675794 G C SPN Missense_Mutation p.D249H 0.27 tolerated(0.19) probably_damaging(0.979) TCGA-Q1-A73O-01 16 29819890 29819890 G A MAZ Splice_Site p.X370_splice 0.29 TCGA-Q1-A73O-01 16 29882941 29882941 G A SEZ6L2 3'UTR 0.39 TCGA-Q1-A73O-01 16 29997591 29997591 G A TAOK2 Silent p.L666L 0.26 TCGA-Q1-A73O-01 16 30392728 30392728 C G SEPT1 Silent p.L129L 0.19 TCGA-Q1-A73O-01 16 30409619 30409619 C T ZNF48 Missense_Mutation p.L350F 0.21 tolerated(0.06) probably_damaging(0.979) TCGA-Q1-A73O-01 16 30456155 30456155 G C SEPHS2 Silent p.L298L 0.22 TCGA-Q1-A73O-01 16 30495167 30495167 G A ITGAL Missense_Mutation p.E248K 0.28 tolerated(0.36) benign(0.001) TCGA-Q1-A73O-01 16 30518142 30518142 C T ITGAL Missense_Mutation p.P825S 0.35 tolerated(0.69) benign(0.016) TCGA-Q1-A73O-01 16 30567088 30567088 C G ZNF764 Silent p.L218L 0.18 TCGA-Q1-A73O-01 16 30582364 30582364 C G ZNF688 Missense_Mutation p.E93Q 0.23 tolerated(0.15) possibly_damaging(0.617) TCGA-Q1-A73O-01 16 30615816 30615816 C T ZNF689 Silent p.S424S 0.23 TCGA-Q1-A73O-01 16 30735462 30735462 C G SRCAP Missense_Mutation p.L1573V 0.21 benign(0.364) TCGA-Q1-A73O-01 16 30768505 30768509 GCCTC - PHKG2 3'UTR 0.12 TCGA-Q1-A73O-01 16 30780684 30780684 G T RNF40 Nonsense_Mutation p.E809* 0.14 TCGA-Q1-A73O-01 16 30783259 30783259 C G RNF40 Missense_Mutation p.R898G 0.23 tolerated(0.1) benign(0.155) TCGA-Q1-A73O-01 16 30991903 30991903 C T SETD1A Silent p.I1502I 0.22 TCGA-Q1-A73O-01 16 31075701 31075701 C G ZNF668 Missense_Mutation p.C50S 0.17 deleterious(0) probably_damaging(0.961) TCGA-Q1-A73O-01 16 31150460 31150460 C T PRSS36 Silent p.%3D 0.20 TCGA-Q1-A73O-01 16 31927750 31927750 C G ZNF267 Missense_Mutation p.S727C 0.25 tolerated(0.23) possibly_damaging(0.866) TCGA-Q1-A73O-01 16 319633 319633 C T ITFG3 3'UTR 0.26 TCGA-Q1-A73O-01 16 3254342 3254342 C G OR1F1 Silent p.L32L 0.22 TCGA-Q1-A73O-01 16 3487266 3487266 G C ZNF597 Missense_Mutation p.L145V 0.44 tolerated(0.05) benign(0.174) TCGA-Q1-A73O-01 16 3487371 3487371 G C ZNF597 Missense_Mutation p.P110A 0.30 tolerated(0.15) benign(0.036) TCGA-Q1-A73O-01 16 3569995 3569995 G A CLUAP1 Silent p.L224L 0.14 TCGA-Q1-A73O-01 16 3602271 3602271 C T NLRC3 Silent p.K806K 0.48 TCGA-Q1-A73O-01 16 4039091 4039091 C G ADCY9 Missense_Mutation p.M738I 0.25 deleterious(0.02) probably_damaging(0.946) TCGA-Q1-A73O-01 16 4384930 4384930 C G GLIS2 Silent p.L158L 0.24 TCGA-Q1-A73O-01 16 4385353 4385353 C T GLIS2 Missense_Mutation p.S245F 0.38 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 16 4511898 4511898 G A NMRAL1 Silent p.F261F 0.26 TCGA-Q1-A73O-01 16 46534343 46534343 C G ANKRD26P1 RNA 0.29 TCGA-Q1-A73O-01 16 4744305 4744305 G C NUDT16L1 Intron 0.14 TCGA-Q1-A73O-01 16 48209285 48209285 G A ABCC11 Silent p.P1194P 0.23 TCGA-Q1-A73O-01 16 53341657 53341657 C G CHD9 Nonsense_Mutation p.S2282* 0.23 TCGA-Q1-A73O-01 16 53524767 53524767 C T RBL2 3'UTR 0.22 TCGA-Q1-A73O-01 16 53525540 53525540 C T AKTIP 3'UTR 0.27 TCGA-Q1-A73O-01 16 55536739 55536739 C G MMP2 Missense_Mutation p.I606M 0.19 tolerated(0.14) probably_damaging(1) TCGA-Q1-A73O-01 16 55539267 55539267 C G MMP2 Missense_Mutation p.F632L 0.31 tolerated(0.24) probably_damaging(0.992) TCGA-Q1-A73O-01 16 57017521 57017521 G A CETP Silent p.Q475Q 0.27 TCGA-Q1-A73O-01 16 57051083 57051083 C T NLRC5 5'UTR 0.17 TCGA-Q1-A73O-01 16 58538089 58538089 C G NDRG4 Missense_Mutation p.F105L 0.19 tolerated(0.11) benign(0.002) TCGA-Q1-A73O-01 16 66612745 66612745 C T CMTM1 Silent p.L234L 0.15 TCGA-Q1-A73O-01 16 67210170 67210170 G C KIAA0895L 3'UTR 0.28 TCGA-Q1-A73O-01 16 67283103 67283103 C T SLC9A5 Silent p.I62I 0.35 TCGA-Q1-A73O-01 16 67314851 67314851 C G PLEKHG4 Missense_Mutation p.S221C 0.28 deleterious(0) benign(0.199) TCGA-Q1-A73O-01 16 67572590 67572590 C T FAM65A Silent p.F60F 0.31 TCGA-Q1-A73O-01 16 67577322 67577322 C T FAM65A Silent p.F870F 0.12 TCGA-Q1-A73O-01 16 67761227 67761227 C T RANBP10 Intron 0.18 TCGA-Q1-A73O-01 16 67969915 67969915 C T PSMB10 Missense_Mutation p.E112K 0.32 tolerated(0.85) benign(0.002) TCGA-Q1-A73O-01 16 67970608 67970608 C G PSMB10 Missense_Mutation p.E15D 0.22 tolerated(0.94) benign(0.003) TCGA-Q1-A73O-01 16 68224713 68224713 C G NFATC3 Nonsense_Mutation p.S714* 0.18 TCGA-Q1-A73O-01 16 682597 682597 G T WFIKKN1 Nonsense_Mutation p.E63* 0.16 TCGA-Q1-A73O-01 16 683146 683146 G A WFIKKN1 Missense_Mutation p.G246R 0.22 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 16 69152355 69152355 G C HAS3 3'Flank 0.33 TCGA-Q1-A73O-01 16 69199375 69199375 G A CIRH1A Silent p.P593P 0.27 TCGA-Q1-A73O-01 16 69335787 69335787 G C SNTB2 3'UTR 0.45 TCGA-Q1-A73O-01 16 69681372 69681372 G A NFAT5 Missense_Mutation p.R232Q 0.20 benign(0.255) TCGA-Q1-A73O-01 16 70952271 70952271 G A HYDIN Missense_Mutation p.S2616L 0.32 possibly_damaging(0.765) TCGA-Q1-A73O-01 16 71019146 71019146 T C HYDIN Missense_Mutation p.D1425G 0.27 probably_damaging(0.981) TCGA-Q1-A73O-01 16 71841730 71841730 C A AP1G1 Intron 0.10 TCGA-Q1-A73O-01 16 72827610 72827610 G A ZFHX3 Nonsense_Mutation p.Q2991* 0.29 TCGA-Q1-A73O-01 16 743814 743814 C G FBXL16 3'UTR 0.28 TCGA-Q1-A73O-01 16 75681711 75681711 C T TERF2IP 5'UTR 0.22 TCGA-Q1-A73O-01 16 81134778 81134778 G C GCSH 5'Flank 0.34 TCGA-Q1-A73O-01 16 81208146 81208146 C G PKD1L2 3'UTR 0.24 TCGA-Q1-A73O-01 16 85646974 85646974 G T GSE1 5'UTR 0.28 TCGA-Q1-A73O-01 16 87350968 87350968 C T C16orf95 5'UTR 0.31 TCGA-Q1-A73O-01 16 87902738 87902738 G A SLC7A5 Silent p.I97I 0.21 TCGA-Q1-A73O-01 16 88694028 88694028 A T ZC3H18 Splice_Site p.X703_splice 0.19 TCGA-Q1-A73O-01 16 88705630 88705630 C T IL17C Missense_Mutation p.S83L 0.18 tolerated(0.37) benign(0.001) TCGA-Q1-A73O-01 16 88744268 88744268 G A SNAI3 3'UTR 0.28 TCGA-Q1-A73O-01 16 88809798 88809798 C T PIEZO1 Intron 0.20 TCGA-Q1-A73O-01 16 88871284 88871284 G A CDT1 Missense_Mutation p.E156K 0.25 tolerated(0.35) benign(0.001) TCGA-Q1-A73O-01 16 89351174 89351174 C T ANKRD11 Silent p.V592V 0.47 TCGA-Q1-A73O-01 16 89758907 89758907 G C CDK10 Missense_Mutation p.R156S 0.17 tolerated(0.42) benign(0.002) TCGA-Q1-A73O-01 16 89784167 89784167 C T VPS9D1 Intron 0.24 TCGA-Q1-A73O-01 16 89784301 89784301 C G VPS9D1 Intron 0.27 TCGA-Q1-A73O-01 16 89936089 89936089 C G SPIRE2 Missense_Mutation p.Q641E 0.28 tolerated(0.23) benign(0.406) TCGA-Q1-A73O-01 16 89987153 89987153 C G MC1R 3'UTR 0.22 TCGA-Q1-A73O-01 16 9858728 9858728 C T GRIN2A Silent p.Q891Q 0.18 TCGA-Q1-A73O-01 17 10227404 10227404 C G MYH13 Missense_Mutation p.D957H 0.24 deleterious(0) probably_damaging(0.997) TCGA-Q1-A73O-01 17 10263307 10263307 C A MYH13 Missense_Mutation p.K205N 0.28 tolerated(0.06) probably_damaging(0.997) TCGA-Q1-A73O-01 17 10312482 10312482 C G MYH8 Splice_Site p.X633_splice 0.37 TCGA-Q1-A73O-01 17 10357178 10357178 C T MYH4 Missense_Mutation p.E906K 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-Q1-A73O-01 17 10408270 10408270 C G MYH1 Missense_Mutation p.E850Q 0.36 deleterious(0.01) possibly_damaging(0.723) TCGA-Q1-A73O-01 17 10429926 10429926 C G MYH2 Missense_Mutation p.E1393Q 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-Q1-A73O-01 17 10435166 10435166 G A MYH2 Silent p.F827F 0.19 TCGA-Q1-A73O-01 17 11881927 11881927 C G ZNF18 Missense_Mutation p.E333Q 0.19 tolerated(0.14) benign(0.025) TCGA-Q1-A73O-01 17 1265207 1265207 G C YWHAE Missense_Mutation p.F120L 0.30 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-Q1-A73O-01 17 1422386 1422386 G C PITPNA 3'UTR 0.28 TCGA-Q1-A73O-01 17 15539374 15539374 G A TRIM16 Silent p.I275I 0.34 TCGA-Q1-A73O-01 17 15978916 15978916 C T NCOR1 Missense_Mutation p.R1201K 0.26 probably_damaging(0.977) TCGA-Q1-A73O-01 17 1629280 1629280 G T WDR81 Nonsense_Mutation p.E343* 0.22 TCGA-Q1-A73O-01 17 1629456 1629456 G A WDR81 Silent p.K401K 0.14 TCGA-Q1-A73O-01 17 1629718 1629718 G A WDR81 Missense_Mutation p.D489N 0.24 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 17 1634540 1634540 C T WDR81 Missense_Mutation p.S1382F 0.11 deleterious(0) probably_damaging(0.968) TCGA-Q1-A73O-01 17 16623539 16623539 G C CCDC144A Missense_Mutation p.K581N 0.24 tolerated(0.08) benign(0.18) TCGA-Q1-A73O-01 17 1756397 1756397 G C RPA1 Missense_Mutation p.R92T 0.24 tolerated(0.05) benign(0.165) TCGA-Q1-A73O-01 17 17942394 17942394 C T ATPAF2 5'UTR 0.22 TCGA-Q1-A73O-01 17 18112430 18112430 C G ALKBH5 3'UTR 0.35 TCGA-Q1-A73O-01 17 18232067 18232067 G C SHMT1 Missense_Mutation p.F483L 0.26 tolerated_low_confidence(0.76) benign(0) TCGA-Q1-A73O-01 17 19246682 19246682 C G B9D1 Missense_Mutation p.D189H 0.40 deleterious(0.01) possibly_damaging(0.503) TCGA-Q1-A73O-01 17 19316316 19316316 C G RNF112 Missense_Mutation p.I149M 0.28 deleterious(0.03) probably_damaging(0.975) TCGA-Q1-A73O-01 17 19678988 19678988 C T ULK2 3'UTR 0.28 TCGA-Q1-A73O-01 17 19679382 19679382 C G ULK2 3'UTR 0.31 TCGA-Q1-A73O-01 17 19680994 19680994 C T ULK2 Silent p.Q984Q 0.22 TCGA-Q1-A73O-01 17 19699456 19699456 C T ULK2 Missense_Mutation p.G650E 0.18 tolerated(0.06) benign(0.01) TCGA-Q1-A73O-01 17 1989089 1989089 G A SMG6 Missense_Mutation p.S1155L 0.24 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 17 21318960 21318960 C G KCNJ12 Missense_Mutation p.F102L 0.09 deleterious(0) probably_damaging(0.981) TCGA-Q1-A73O-01 17 2201213 2201213 G A SMG6 Missense_Mutation p.P662S 0.29 deleterious(0.02) possibly_damaging(0.876) TCGA-Q1-A73O-01 17 25748850 25748850 C G TBC1D3P5 RNA 0.26 TCGA-Q1-A73O-01 17 25877623 25877623 G C KSR1 5'UTR 0.35 TCGA-Q1-A73O-01 17 25919586 25919586 C T KSR1 Silent p.I274I 0.32 TCGA-Q1-A73O-01 17 2607745 2607745 C T CLUH Missense_Mutation p.E34K 0.28 tolerated(0.31) benign(0.001) TCGA-Q1-A73O-01 17 26962166 26962166 C T KIAA0100 Silent p.R813R 0.26 TCGA-Q1-A73O-01 17 28506219 28506219 G C NSRP1 Missense_Mutation p.D138H 0.12 deleterious(0.02) probably_damaging(0.95) TCGA-Q1-A73O-01 17 28792211 28792211 G C CPD 3'UTR 0.19 TCGA-Q1-A73O-01 17 292809 292809 C A FAM101B 3'UTR 0.20 TCGA-Q1-A73O-01 17 29623322 29623322 G C OMG Missense_Mutation p.L10V 0.22 tolerated(0.35) benign(0) TCGA-Q1-A73O-01 17 29864430 29864430 C T RAB11FIP4 3'UTR 0.21 TCGA-Q1-A73O-01 17 30520242 30520242 G A RHOT1 Missense_Mutation p.D243N 0.27 tolerated(0.2) benign(0.008) TCGA-Q1-A73O-01 17 32904615 32904615 G C C17orf102 Missense_Mutation p.I145M 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-Q1-A73O-01 17 34325388 34325388 G A CCL15 Missense_Mutation p.S59L 0.25 tolerated(0.18) possibly_damaging(0.67) TCGA-Q1-A73O-01 17 35391067 35391067 C G AATF Intron 0.42 TCGA-Q1-A73O-01 17 36453116 36453116 C G MRPL45 5'UTR 0.21 TCGA-Q1-A73O-01 17 36499245 36499245 C T GPR179 Missense_Mutation p.R143K 0.28 tolerated(0.35) benign(0.008) TCGA-Q1-A73O-01 17 36499258 36499258 C T GPR179 Missense_Mutation p.E139K 0.26 deleterious(0) probably_damaging(0.995) TCGA-Q1-A73O-01 17 36882427 36882427 A T MLLT6 3'UTR 0.29 TCGA-Q1-A73O-01 17 37296064 37296064 G A PLXDC1 Missense_Mutation p.S33F 0.23 tolerated(0.72) benign(0.003) TCGA-Q1-A73O-01 17 37565069 37565069 C G MED1 Missense_Mutation p.Q1135H 0.20 tolerated_low_confidence(0.07) unknown(0) TCGA-Q1-A73O-01 17 37815315 37815315 G A STARD3 Missense_Mutation p.E220K 0.24 deleterious(0.03) benign(0.01) TCGA-Q1-A73O-01 17 37934158 37934158 C G IKZF3 Intron 0.29 TCGA-Q1-A73O-01 17 3840751 3840751 G A ATP2A3 Silent p.F760F 0.29 TCGA-Q1-A73O-01 17 38950178 38950178 C T KRT28 Missense_Mutation p.E367K 0.24 deleterious(0.02) possibly_damaging(0.867) TCGA-Q1-A73O-01 17 38950189 38950189 C T KRT28 Missense_Mutation p.R363K 0.27 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 17 38977328 38977328 C G KRT10 Missense_Mutation p.Q223H 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-Q1-A73O-01 17 39041065 39041065 C T KRT20 Missense_Mutation p.E125K 0.14 tolerated(0.08) benign(0.057) TCGA-Q1-A73O-01 17 39119876 39119876 C T KRT39 Intron 0.22 TCGA-Q1-A73O-01 17 39389159 39389159 G A KRTAP9-3 Missense_Mutation p.E136K 0.23 tolerated(0.39) probably_damaging(0.956) TCGA-Q1-A73O-01 17 39577629 39577629 C T KRT37 Missense_Mutation p.E411K 0.29 deleterious(0.01) possibly_damaging(0.615) TCGA-Q1-A73O-01 17 39633043 39633043 G A KRT35 3'UTR 0.20 TCGA-Q1-A73O-01 17 39670398 39670398 G A KRT15 Intron 0.24 TCGA-Q1-A73O-01 17 39684455 39684455 G A KRT19 Silent p.F15F 0.26 TCGA-Q1-A73O-01 17 39728212 39728212 C G KRT9 Missense_Mutation p.L11F 0.26 deleterious_low_confidence(0.02) unknown(0) TCGA-Q1-A73O-01 17 39913930 39913930 G A JUP Missense_Mutation p.S627L 0.43 tolerated(0.06) benign(0.411) TCGA-Q1-A73O-01 17 39928112 39928112 C T JUP Intron 0.17 TCGA-Q1-A73O-01 17 40342363 40342363 C G GHDC Intron 0.29 TCGA-Q1-A73O-01 17 40342672 40342672 C G GHDC Missense_Mutation p.D420H 0.25 deleterious(0) probably_damaging(0.995) TCGA-Q1-A73O-01 17 40849680 40849680 G A CNTNAP1 Missense_Mutation p.R1226Q 0.27 deleterious(0) possibly_damaging(0.821) TCGA-Q1-A73O-01 17 41001113 41001113 C G AOC2 Missense_Mutation p.N533K 0.29 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 17 41019397 41019397 G A AOC4P RNA 0.40 TCGA-Q1-A73O-01 17 41031653 41031653 C G LINC00671 RNA 0.36 TCGA-Q1-A73O-01 17 41477529 41477529 G A ARL4D Silent p.L143L 0.17 TCGA-Q1-A73O-01 17 4174731 4174731 G T UBE2G1 3'UTR 0.33 TCGA-Q1-A73O-01 17 41847106 41847106 C T DUSP3 Silent p.Q143Q 0.39 TCGA-Q1-A73O-01 17 41891626 41891626 G A MPP3 Silent p.Y371Y 0.25 TCGA-Q1-A73O-01 17 42151565 42151565 G C G6PC3 Missense_Mutation p.E86Q 0.34 tolerated(0.06) probably_damaging(1) TCGA-Q1-A73O-01 17 42266673 42266673 G A TMUB2 Missense_Mutation p.D107N 0.38 tolerated(0.06) benign(0.047) TCGA-Q1-A73O-01 17 42268502 42268502 G T TMUB2 3'UTR 0.16 TCGA-Q1-A73O-01 17 42268510 42268510 C T TMUB2 3'UTR 0.15 TCGA-Q1-A73O-01 17 42432488 42432488 C G FAM171A2 Missense_Mutation p.R365P 0.24 deleterious(0) possibly_damaging(0.856) TCGA-Q1-A73O-01 17 42478508 42478508 C T GPATCH8 Missense_Mutation p.E313K 0.42 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 17 43037648 43037648 C A C1QL1 Nonsense_Mutation p.E229* 0.23 TCGA-Q1-A73O-01 17 43192603 43192603 C A PLCD3 Missense_Mutation p.Q523H 0.30 tolerated(0.06) benign(0.046) TCGA-Q1-A73O-01 17 43213571 43213571 G A ACBD4 Silent p.V20V 0.27 TCGA-Q1-A73O-01 17 43516962 43516962 C G PLEKHM1 Silent p.L980L 0.31 TCGA-Q1-A73O-01 17 45915151 45915151 C G SCRN2 3'UTR 0.24 TCGA-Q1-A73O-01 17 46054077 46054077 G A CDK5RAP3 Splice_Site p.X267_splice 0.20 TCGA-Q1-A73O-01 17 4649284 4649284 G C ZMYND15 Nonstop_Mutation p.*751Sext*5 0.26 TCGA-Q1-A73O-01 17 47781577 47781577 C T SLC35B1 Silent p.L180L 0.27 TCGA-Q1-A73O-01 17 47797793 47797793 G A FAM117A Silent p.S156S 0.28 TCGA-Q1-A73O-01 17 48068798 48068798 C A DLX3 3'UTR 0.25 TCGA-Q1-A73O-01 17 48221036 48221036 C G PPP1R9B Missense_Mutation p.D516H 0.17 deleterious(0) probably_damaging(0.996) TCGA-Q1-A73O-01 17 4844434 4844434 G A RNF167 Silent p.L49L 0.32 TCGA-Q1-A73O-01 17 48625789 48625789 C T SPATA20 Nonsense_Mutation p.Q91* 0.25 TCGA-Q1-A73O-01 17 48746594 48746594 G A ABCC3 Silent p.E677E 0.19 TCGA-Q1-A73O-01 17 4925710 4925710 G C KIF1C Missense_Mutation p.K778N 0.20 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-Q1-A73O-01 17 49279025 49279025 G A MBTD1 Silent p.F384F 0.24 TCGA-Q1-A73O-01 17 4999219 4999219 G A ZFP3 3'UTR 0.25 TCGA-Q1-A73O-01 17 5015306 5015306 G C ZNF232 5'UTR 0.38 TCGA-Q1-A73O-01 17 5015311 5015311 G A ZNF232 5'UTR 0.46 TCGA-Q1-A73O-01 17 5084948 5084948 C G ZNF594 3'UTR 0.29 TCGA-Q1-A73O-01 17 5087312 5087312 C G ZNF594 Missense_Mutation p.E80D 0.17 tolerated(0.07) benign(0.122) TCGA-Q1-A73O-01 17 54968690 54968690 C T TRIM25 3'UTR 0.41 TCGA-Q1-A73O-01 17 55027347 55027347 C T COIL Missense_Mutation p.R419Q 0.21 tolerated(0.08) benign(0.209) TCGA-Q1-A73O-01 17 56082318 56082318 C G RP11-159D12.5 5'UTR 0.26 TCGA-Q1-A73O-01 17 56276955 56276955 G C EPX Missense_Mutation p.R446T 0.32 tolerated(0.11) benign(0.063) TCGA-Q1-A73O-01 17 56423689 56423689 G C SUPT4H1 Intron 0.25 TCGA-Q1-A73O-01 17 56429476 56429476 C T SUPT4H1 Silent p.P7P 0.20 TCGA-Q1-A73O-01 17 57189557 57189557 C G SKA2 3'UTR 0.18 TCGA-Q1-A73O-01 17 59821859 59821859 C G BRIP1 Missense_Mutation p.E731Q 0.16 tolerated(0.22) possibly_damaging(0.642) TCGA-Q1-A73O-01 17 5991361 5991361 G C WSCD1 Missense_Mutation p.G160A 0.20 deleterious(0.02) benign(0.319) TCGA-Q1-A73O-01 17 600665 600665 C G VPS53 Missense_Mutation p.G93A 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-Q1-A73O-01 17 600666 600666 C T VPS53 Missense_Mutation p.G93R 0.25 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 17 60679417 60679417 G C TLK2 Missense_Mutation p.V579L 0.25 tolerated(0.22) possibly_damaging(0.561) TCGA-Q1-A73O-01 17 60813357 60813357 G A MARCH10 Silent p.F624F 0.13 TCGA-Q1-A73O-01 17 61315253 61315253 G A TANC2 Missense_Mutation p.G209E 0.23 tolerated(0.06) benign(0.254) TCGA-Q1-A73O-01 17 61557756 61557756 C T ACE Silent p.D238D 0.17 TCGA-Q1-A73O-01 17 61780194 61780194 C G STRADA 3'Flank 0.21 TCGA-Q1-A73O-01 17 62016224 62016224 G A SCN4A 3'UTR 0.33 TCGA-Q1-A73O-01 17 62758538 62758538 C A hsa-mir-6080 RNA 0.25 TCGA-Q1-A73O-01 17 6360959 6360959 G A PITPNM3 Silent p.I858I 0.32 TCGA-Q1-A73O-01 17 6381313 6381313 C A PITPNM3 Silent p.G294G 0.24 TCGA-Q1-A73O-01 17 64025251 64025251 G A CEP112 Missense_Mutation p.S498L 0.18 tolerated(0.08) possibly_damaging(0.883) TCGA-Q1-A73O-01 17 65908690 65908690 G A BPTF Missense_Mutation p.E1564K 0.23 possibly_damaging(0.591) TCGA-Q1-A73O-01 17 6604421 6604421 G A SLC13A5 Silent p.L247L 0.22 TCGA-Q1-A73O-01 17 66551867 66551867 C G FAM20A Missense_Mutation p.R141T 0.20 tolerated(0.48) benign(0.055) TCGA-Q1-A73O-01 17 6683544 6683544 G C FBXO39 Silent p.L119L 0.25 TCGA-Q1-A73O-01 17 6704101 6704101 C T TEKT1 Missense_Mutation p.M338I 0.20 tolerated(1) benign(0.001) TCGA-Q1-A73O-01 17 67047271 67047271 G C ABCA9 5'UTR 0.36 TCGA-Q1-A73O-01 17 67246763 67246763 C G ABCA5 Splice_Site p.X1512_splice 0.23 TCGA-Q1-A73O-01 17 7017496 7017496 G A ASGR2 Nonsense_Mutation p.Q22* 0.11 TCGA-Q1-A73O-01 17 71819832 71819832 C G LINC00469 RNA 0.22 TCGA-Q1-A73O-01 17 7213022 7213022 C T EIF5A Missense_Mutation p.S53L 0.25 deleterious(0) probably_damaging(0.975) TCGA-Q1-A73O-01 17 7219241 7219241 C T NEURL4 3'UTR 0.42 TCGA-Q1-A73O-01 17 72338795 72338795 G C KIF19 Missense_Mutation p.K86N 0.19 deleterious(0.02) possibly_damaging(0.516) TCGA-Q1-A73O-01 17 7287072 7287072 G A TNK1 Silent p.P157P 0.26 TCGA-Q1-A73O-01 17 72926924 72926924 G A OTOP2 Silent p.L398L 0.26 TCGA-Q1-A73O-01 17 73236973 73236973 G C GGA3 Missense_Mutation p.S371C 0.35 deleterious(0.05) benign(0.013) TCGA-Q1-A73O-01 17 73517555 73517555 G C TSEN54 Missense_Mutation p.G196A 0.25 tolerated(0.33) benign(0.08) TCGA-Q1-A73O-01 17 73560506 73560506 C G LLGL2 Missense_Mutation p.I318M 0.22 tolerated(0.63) possibly_damaging(0.553) TCGA-Q1-A73O-01 17 73560536 73560536 C T LLGL2 Silent p.F328F 0.25 TCGA-Q1-A73O-01 17 73726397 73726397 G C ITGB4 Missense_Mutation p.D272H 0.42 deleterious(0) probably_damaging(0.981) TCGA-Q1-A73O-01 17 73774737 73774737 C T H3F3B Missense_Mutation p.R117K 0.19 deleterious_low_confidence(0.01) benign(0.26) TCGA-Q1-A73O-01 17 73774771 73774771 C T H3F3B Missense_Mutation p.E106K 0.11 deleterious_low_confidence(0) benign(0.043) TCGA-Q1-A73O-01 17 73819444 73819444 G A UNK Silent p.L706L 0.17 TCGA-Q1-A73O-01 17 73887309 73887309 C G TRIM65 Missense_Mutation p.E369Q 0.24 tolerated(0.16) benign(0.091) TCGA-Q1-A73O-01 17 74621487 74621487 C T ST6GALNAC1 Nonsense_Mutation p.W576* 0.26 TCGA-Q1-A73O-01 17 76117640 76117640 G C TMC6 Missense_Mutation p.I460M 0.40 tolerated(0.23) benign(0.091) TCGA-Q1-A73O-01 17 76354403 76354403 C T SOCS3 3'UTR 0.20 TCGA-Q1-A73O-01 17 76354963 76354963 C A SOCS3 Missense_Mutation p.D72Y 0.21 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 17 76354970 76354970 C T SOCS3 Silent p.L69L 0.27 TCGA-Q1-A73O-01 17 76355014 76355014 C T SOCS3 Missense_Mutation p.E55K 0.36 tolerated(0.07) possibly_damaging(0.802) TCGA-Q1-A73O-01 17 77042726 77042726 C A C1QTNF1 Missense_Mutation p.S82Y 0.18 deleterious(0) benign(0.007) TCGA-Q1-A73O-01 17 7748248 7748248 G A KDM6B 5'UTR 0.29 TCGA-Q1-A73O-01 17 7760387 7760387 C A LSMD1 Missense_Mutation p.D119Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 17 78445576 78445576 G A NPTX1 Missense_Mutation p.H345Y 0.29 deleterious(0) possibly_damaging(0.901) TCGA-Q1-A73O-01 17 78796986 78796986 A T RPTOR Missense_Mutation p.S367C 0.42 tolerated(0.21) benign(0.275) TCGA-Q1-A73O-01 17 79429020 79429020 C T RP11-1055B8.7 Missense_Mutation p.S2444L 0.49 possibly_damaging(0.842) TCGA-Q1-A73O-01 17 79513984 79513984 G C C17orf70 Missense_Mutation p.I708M 0.33 deleterious(0) probably_damaging(0.942) TCGA-Q1-A73O-01 17 79914523 79914523 C G NOTUM Intron 0.36 TCGA-Q1-A73O-01 17 79973017 79973017 G C ASPSCR1 Missense_Mutation p.E474Q 0.36 tolerated_low_confidence(0.27) benign(0.065) TCGA-Q1-A73O-01 17 80042681 80042681 C G FASN Missense_Mutation p.E1520Q 0.36 tolerated(0.46) benign(0.011) TCGA-Q1-A73O-01 17 80790161 80790161 G C ZNF750 Nonsense_Mutation p.S57* 0.23 TCGA-Q1-A73O-01 17 8159761 8159761 G A PFAS Intron 0.31 TCGA-Q1-A73O-01 18 13008509 13008509 C G CEP192 Silent p.L115L 0.36 TCGA-Q1-A73O-01 18 14778038 14778038 C G ANKRD30B Missense_Mutation p.Q462E 0.20 tolerated(0.94) benign(0.074) TCGA-Q1-A73O-01 18 19053101 19053101 G A GREB1L Missense_Mutation p.M764I 0.28 tolerated(0.35) benign(0.167) TCGA-Q1-A73O-01 18 20564878 20564878 C T RBBP8 Missense_Mutation p.H212Y 0.23 tolerated(0.24) benign(0.013) TCGA-Q1-A73O-01 18 21511047 21511047 C G LAMA3 Missense_Mutation p.L2820V 0.25 probably_damaging(0.986) TCGA-Q1-A73O-01 18 21534489 21534489 C T LAMA3 Silent p.I3293I 0.28 TCGA-Q1-A73O-01 18 23854695 23854695 G C TAF4B Silent p.L222L 0.24 TCGA-Q1-A73O-01 18 28991345 28991345 G A DSG4 Missense_Mutation p.M782I 0.24 tolerated(0.45) benign(0.001) TCGA-Q1-A73O-01 18 2946398 2946398 C T LPIN2 Intron 0.24 TCGA-Q1-A73O-01 18 30260513 30260513 C T KLHL14 Missense_Mutation p.G430S 0.25 deleterious(0) probably_damaging(0.996) TCGA-Q1-A73O-01 18 31431372 31431372 G A NOL4 3'UTR 0.25 TCGA-Q1-A73O-01 18 43844535 43844535 C T C18orf25 3'UTR 0.31 TCGA-Q1-A73O-01 18 47769346 47769346 C T CCDC11 Silent p.L379L 0.40 TCGA-Q1-A73O-01 18 48591955 48591955 C G SMAD4 Missense_Mutation p.T373R 0.29 deleterious(0) probably_damaging(0.973) TCGA-Q1-A73O-01 18 50985767 50985767 C G DCC Silent p.L1186L 0.27 TCGA-Q1-A73O-01 18 55146253 55146253 G A ONECUT2 3'UTR 0.40 TCGA-Q1-A73O-01 18 56278936 56278936 G A ALPK2 Missense_Mutation p.R32C 0.26 deleterious(0) probably_damaging(0.966) TCGA-Q1-A73O-01 18 56651248 56651248 C G ZNF532 Missense_Mutation p.F1152L 0.30 tolerated(0.66) benign(0.001) TCGA-Q1-A73O-01 18 56652675 56652675 G C ZNF532 3'UTR 0.15 TCGA-Q1-A73O-01 18 58039873 58039873 C G MC4R 5'UTR 0.30 TCGA-Q1-A73O-01 18 61056998 61056998 G C VPS4B 3'UTR 0.16 TCGA-Q1-A73O-01 18 61570670 61570670 C T SERPINB2 3'UTR 0.19 TCGA-Q1-A73O-01 18 67833312 67833312 G C RTTN Missense_Mutation p.L639V 0.17 deleterious(0.01) benign(0.171) TCGA-Q1-A73O-01 18 77659102 77659102 C T KCNG2 Silent p.F229F 0.26 TCGA-Q1-A73O-01 18 77917738 77917738 G A PARD6G Silent p.L349L 0.30 TCGA-Q1-A73O-01 18 8394576 8394576 G A PTPRM Silent p.L1437L 0.19 TCGA-Q1-A73O-01 18 9562029 9562029 C G PPP4R1 Missense_Mutation p.L597F 0.30 tolerated(0.06) benign(0.439) TCGA-Q1-A73O-01 19 10402778 10402778 G A ICAM5 Silent p.V247V 0.33 TCGA-Q1-A73O-01 19 10419408 10419408 C T ZGLP1 5'UTR 0.32 TCGA-Q1-A73O-01 19 10446430 10446430 G C ICAM3 Nonsense_Mutation p.S189* 0.28 TCGA-Q1-A73O-01 19 10450324 10450324 G A ICAM3 5'UTR 0.26 TCGA-Q1-A73O-01 19 10754001 10754001 C T SLC44A2 Silent p.F687F 0.34 TCGA-Q1-A73O-01 19 11034248 11034248 C T YIPF2 Missense_Mutation p.E253K 0.23 deleterious(0.04) benign(0.403) TCGA-Q1-A73O-01 19 11170754 11170754 G A SMARCA4 Missense_Mutation p.R1601Q 0.22 benign(0.281) TCGA-Q1-A73O-01 19 11322793 11322793 G C DOCK6 Missense_Mutation p.S1509C 0.39 deleterious(0) probably_damaging(0.993) TCGA-Q1-A73O-01 19 11352474 11352474 C T C19orf80 3'UTR 0.35 TCGA-Q1-A73O-01 19 11462747 11462747 G A CCDC159 Missense_Mutation p.E169K 0.38 deleterious(0.01) possibly_damaging(0.641) TCGA-Q1-A73O-01 19 11891039 11891039 C T ZNF441 Nonsense_Mutation p.Q134* 0.21 TCGA-Q1-A73O-01 19 11891225 11891225 C T ZNF441 Missense_Mutation p.R196C 0.15 deleterious(0.02) benign(0) TCGA-Q1-A73O-01 19 11942995 11942995 C T ZNF440 Missense_Mutation p.S335F 0.15 deleterious(0.03) probably_damaging(0.962) TCGA-Q1-A73O-01 19 12542452 12542452 G A ZNF443 Silent p.F178F 0.27 TCGA-Q1-A73O-01 19 12542517 12542517 G C ZNF443 Missense_Mutation p.Q157E 0.28 tolerated(0.22) benign(0.388) TCGA-Q1-A73O-01 19 13050346 13050346 G C CALR Missense_Mutation p.E100Q 0.27 deleterious(0.01) probably_damaging(0.981) TCGA-Q1-A73O-01 19 13875878 13875878 G A MRI1 Missense_Mutation p.R109Q 0.24 tolerated(0.65) benign(0.004) TCGA-Q1-A73O-01 19 13875886 13875886 G T MRI1 Nonsense_Mutation p.E112* 0.26 TCGA-Q1-A73O-01 19 13942528 13942528 C G ZSWIM4 3'UTR 0.37 TCGA-Q1-A73O-01 19 14588675 14588675 G C GIPC1 3'UTR 0.39 TCGA-Q1-A73O-01 19 14703128 14703128 G C CLEC17A Missense_Mutation p.E79Q 0.20 tolerated(0.05) probably_damaging(0.986) TCGA-Q1-A73O-01 19 15349979 15349979 C T BRD4 Missense_Mutation p.E1225K 0.12 benign(0.305) TCGA-Q1-A73O-01 19 15511673 15511673 C T AKAP8L Missense_Mutation p.E306K 0.30 tolerated(0.06) benign(0.074) TCGA-Q1-A73O-01 19 15839495 15839495 C T OR10H2 Silent p.L214L 0.15 TCGA-Q1-A73O-01 19 15917990 15917990 G C OR10H1 Silent p.L286L 0.35 TCGA-Q1-A73O-01 19 16630141 16630141 G A CHERP Silent p.L860L 0.20 TCGA-Q1-A73O-01 19 16872844 16872844 G C NWD1 Missense_Mutation p.K676N 0.19 tolerated(0.08) benign(0.037) TCGA-Q1-A73O-01 19 16988416 16988416 G A SIN3B Missense_Mutation p.E1006K 0.27 tolerated(0.05) possibly_damaging(0.493) TCGA-Q1-A73O-01 19 17441716 17441716 C G ANO8 Missense_Mutation p.R305T 0.30 tolerated(0.11) benign(0.18) TCGA-Q1-A73O-01 19 17444512 17444512 C T ANO8 Silent p.L68L 0.15 TCGA-Q1-A73O-01 19 18004651 18004651 G A SLC5A5 Missense_Mutation p.D633N 0.34 tolerated_low_confidence(0.09) benign(0.109) TCGA-Q1-A73O-01 19 18307151 18307151 C T MPV17L2 3'UTR 0.32 TCGA-Q1-A73O-01 19 18704914 18704914 C A CRLF1 Nonsense_Mutation p.E406* 0.27 TCGA-Q1-A73O-01 19 18853807 18853807 G A CRTC1 Missense_Mutation p.G72R 0.34 tolerated(0.08) probably_damaging(0.997) TCGA-Q1-A73O-01 19 18853808 18853808 G A CRTC1 Missense_Mutation p.G72E 0.35 deleterious(0) probably_damaging(0.995) TCGA-Q1-A73O-01 19 2114814 2114814 G C AP3D1 Missense_Mutation p.L786V 0.25 tolerated(0.29) benign(0.064) TCGA-Q1-A73O-01 19 2121284 2121284 G A AP3D1 Silent p.I376I 0.17 TCGA-Q1-A73O-01 19 21992472 21992472 C G ZNF43 Missense_Mutation p.E123Q 0.26 tolerated(0.1) probably_damaging(0.971) TCGA-Q1-A73O-01 19 22942226 22942226 C G ZNF99 Missense_Mutation p.R162T 0.26 tolerated(0.12) benign(0.443) TCGA-Q1-A73O-01 19 23542574 23542574 C G ZNF91 Missense_Mutation p.K1069N 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-Q1-A73O-01 19 23543181 23543181 G A ZNF91 Missense_Mutation p.S867L 0.41 deleterious(0.01) possibly_damaging(0.693) TCGA-Q1-A73O-01 19 23837002 23837002 C T ZNF675 Missense_Mutation p.E245K 0.18 tolerated(1) benign(0.043) TCGA-Q1-A73O-01 19 2430826 2430826 C G LMNB2 3'UTR 0.16 TCGA-Q1-A73O-01 19 30104848 30104848 C T POP4 Silent p.F165F 0.12 TCGA-Q1-A73O-01 19 32949288 32949288 G C DPY19L3 Missense_Mutation p.E399Q 0.34 deleterious(0) possibly_damaging(0.889) TCGA-Q1-A73O-01 19 33149898 33149898 G A ANKRD27 Silent p.L8L 0.29 TCGA-Q1-A73O-01 19 34845055 34845055 C T KIAA0355 3'UTR 0.20 TCGA-Q1-A73O-01 19 35250490 35250490 G A ZNF599 Missense_Mutation p.H406Y 0.12 deleterious(0) benign(0.049) TCGA-Q1-A73O-01 19 3578589 3578589 G A HMG20B 3'UTR 0.29 TCGA-Q1-A73O-01 19 3585802 3585802 C G GIPC3 Missense_Mutation p.F69L 0.20 deleterious(0.04) probably_damaging(0.978) TCGA-Q1-A73O-01 19 3590357 3590357 G T GIPC3 3'UTR 0.25 TCGA-Q1-A73O-01 19 3590722 3590722 G C GIPC3 3'UTR 0.21 TCGA-Q1-A73O-01 19 36035818 36035818 C G GAPDHS Missense_Mutation p.S355C 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-Q1-A73O-01 19 36380797 36380797 C T NFKBID Missense_Mutation p.E295K 0.18 deleterious(0.01) possibly_damaging(0.831) TCGA-Q1-A73O-01 19 3648672 3648672 C T PIP5K1C Missense_Mutation p.E388K 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-Q1-A73O-01 19 36594670 36594670 G A WDR62 Missense_Mutation p.D1314N 0.50 tolerated_low_confidence(0.45) benign(0.006) TCGA-Q1-A73O-01 19 36831229 36831229 C T ZFP14 Missense_Mutation p.R500K 0.17 tolerated(0.19) probably_damaging(0.966) TCGA-Q1-A73O-01 19 36964289 36964289 C T ZNF566 Silent p.Q27Q 0.19 TCGA-Q1-A73O-01 19 36964342 36964342 C T ZNF566 Missense_Mutation p.D10N 0.19 deleterious(0) probably_damaging(0.997) TCGA-Q1-A73O-01 19 36964360 36964360 C T ZNF566 Missense_Mutation p.E4K 0.19 tolerated(0.21) possibly_damaging(0.492) TCGA-Q1-A73O-01 19 37734225 37734225 G T ZNF383 Nonsense_Mutation p.E363* 0.23 TCGA-Q1-A73O-01 19 37904387 37904387 G C ZNF569 Missense_Mutation p.F391L 0.16 deleterious(0) probably_damaging(0.984) TCGA-Q1-A73O-01 19 37905078 37905078 C G ZNF569 Missense_Mutation p.R161T 0.29 tolerated(0.33) benign(0) TCGA-Q1-A73O-01 19 38377815 38377815 C T WDR87 Missense_Mutation p.E2127K 0.26 benign(0.063) TCGA-Q1-A73O-01 19 38905556 38905556 C G RASGRP4 Missense_Mutation p.E388Q 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-Q1-A73O-01 19 39056336 39056336 C T RYR1 Silent p.L4454L 0.28 TCGA-Q1-A73O-01 19 39063865 39063865 G C RYR1 Missense_Mutation p.E4683Q 0.20 unknown(0) TCGA-Q1-A73O-01 19 39395717 39395717 C T NFKBIB Missense_Mutation p.S81L 0.33 tolerated(0.19) benign(0.051) TCGA-Q1-A73O-01 19 3959476 3959476 C G DAPK3 Missense_Mutation p.E330Q 0.22 deleterious(0.02) possibly_damaging(0.725) TCGA-Q1-A73O-01 19 39664289 39664289 C T PAK4 Missense_Mutation p.S246F 0.32 deleterious(0.03) benign(0.144) TCGA-Q1-A73O-01 19 39819574 39819574 C G GMFG Intron 0.27 TCGA-Q1-A73O-01 19 39883109 39883109 G C MED29 Missense_Mutation p.L95F 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-Q1-A73O-01 19 39884192 39884192 G C MED29 Splice_Site p.X113_splice 0.25 TCGA-Q1-A73O-01 19 39898893 39898893 C T ZFP36 Missense_Mutation p.P185S 0.20 tolerated(0.19) benign(0.102) TCGA-Q1-A73O-01 19 39962366 39962366 C G SUPT5H Nonsense_Mutation p.S649* 0.22 TCGA-Q1-A73O-01 19 40221983 40221983 C T CLC 3'UTR 0.09 TCGA-Q1-A73O-01 19 4047258 4047258 G C ZBTB7A 3'UTR 0.45 TCGA-Q1-A73O-01 19 41172703 41172703 C G NUMBL 3'UTR 0.31 TCGA-Q1-A73O-01 19 41247916 41247916 G A C19orf54 3'UTR 0.38 TCGA-Q1-A73O-01 19 41314121 41314121 G C EGLN2 3'UTR 0.19 TCGA-Q1-A73O-01 19 41778084 41778084 G C HNRNPUL1 Missense_Mutation p.K172N 0.31 deleterious(0) unknown(0) TCGA-Q1-A73O-01 19 41826295 41826295 G A CCDC97 Silent p.E277E 0.38 TCGA-Q1-A73O-01 19 42259531 42259531 G A CEACAM6 5'UTR 0.24 TCGA-Q1-A73O-01 19 42364871 42364871 G C RPS19 Silent p.V9V 0.29 TCGA-Q1-A73O-01 19 42791223 42791223 G C CIC Missense_Mutation p.E95Q 0.19 benign(0.002) TCGA-Q1-A73O-01 19 42821049 42821049 G A TMEM145 Silent p.V278V 0.31 TCGA-Q1-A73O-01 19 42821970 42821970 C G TMEM145 Nonsense_Mutation p.S337* 0.37 TCGA-Q1-A73O-01 19 42931144 42931144 G A LIPE Missense_Mutation p.S53L 0.29 tolerated_low_confidence(0.2) benign(0.003) TCGA-Q1-A73O-01 19 43268273 43268273 G A PSG8 Silent p.L75L 0.28 TCGA-Q1-A73O-01 19 44047769 44047769 C G XRCC1 Missense_Mutation p.E595Q 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-Q1-A73O-01 19 44099376 44099376 C T IRGQ Missense_Mutation p.E39K 0.29 tolerated_low_confidence(0.07) benign(0.194) TCGA-Q1-A73O-01 19 44116615 44116615 G C SRRM5 Silent p.R114R 0.25 TCGA-Q1-A73O-01 19 44222731 44222731 C T IRGC Silent p.P7P 0.42 TCGA-Q1-A73O-01 19 44235690 44235690 C T SMG9 3'UTR 0.26 TCGA-Q1-A73O-01 19 44302734 44302734 G A LYPD5 Silent p.L130L 0.22 TCGA-Q1-A73O-01 19 44471050 44471050 G C ZNF221 Missense_Mutation p.E466Q 0.25 tolerated(0.85) benign(0.017) TCGA-Q1-A73O-01 19 45295700 45295700 G A CBLC Missense_Mutation p.E356K 0.30 deleterious(0) possibly_damaging(0.865) TCGA-Q1-A73O-01 19 45854746 45854746 C T ERCC2 3'UTR 0.30 TCGA-Q1-A73O-01 19 46191815 46191815 G C SNRPD2 Silent p.L4L 0.24 TCGA-Q1-A73O-01 19 46289752 46289752 C G DMWD Missense_Mutation p.W334C 0.32 deleterious(0) probably_damaging(0.971) TCGA-Q1-A73O-01 19 46347300 46347300 C T SYMPK Missense_Mutation p.E279K 0.24 tolerated(0.16) probably_damaging(0.977) TCGA-Q1-A73O-01 19 4652965 4652965 C G TNFAIP8L1 3'UTR 0.28 TCGA-Q1-A73O-01 19 46878926 46878926 G T PPP5C Silent p.V143V 0.31 TCGA-Q1-A73O-01 19 47282021 47282021 G T SLC1A5 Silent p.L323L 0.31 TCGA-Q1-A73O-01 19 47282071 47282071 G C SLC1A5 Missense_Mutation p.L307V 0.26 tolerated(0.65) benign(0.05) TCGA-Q1-A73O-01 19 47735899 47735899 C G BBC3 5'UTR 0.16 TCGA-Q1-A73O-01 19 4816923 4816923 G C TICAM1 Missense_Mutation p.F489L 0.33 tolerated(0.17) benign(0.061) TCGA-Q1-A73O-01 19 48343087 48343087 G A CRX Missense_Mutation p.G255S 0.20 tolerated(0.6) benign(0.005) TCGA-Q1-A73O-01 19 48495318 48495318 G C BSPH1 Silent p.L7L 0.23 TCGA-Q1-A73O-01 19 48698998 48698998 G A C19orf68 Nonsense_Mutation p.W559* 0.23 TCGA-Q1-A73O-01 19 49298655 49298655 C T BCAT2 3'UTR 0.16 TCGA-Q1-A73O-01 19 49471666 49471666 G A GYS1 3'UTR 0.26 TCGA-Q1-A73O-01 19 49637098 49637098 G C PPFIA3 Missense_Mutation p.E403Q 0.31 deleterious(0.03) probably_damaging(0.982) TCGA-Q1-A73O-01 19 49714276 49714276 G A TRPM4 Missense_Mutation p.D1156N 0.24 tolerated(0.07) possibly_damaging(0.688) TCGA-Q1-A73O-01 19 49933725 49933725 G C SLC17A7 3'UTR 0.20 TCGA-Q1-A73O-01 19 49954907 49954907 C T PIH1D1 5'UTR 0.35 TCGA-Q1-A73O-01 19 49993274 49993274 G C RPL13A Intron 0.23 TCGA-Q1-A73O-01 19 50104804 50104804 C G PRR12 Missense_Mutation p.Q1468E 0.20 unknown(0) TCGA-Q1-A73O-01 19 50119194 50119194 G C PRR12 Missense_Mutation p.E1739Q 0.24 unknown(0) TCGA-Q1-A73O-01 19 50139083 50139083 G A RRAS Silent p.F160F 0.23 TCGA-Q1-A73O-01 19 50243365 50243365 C T TSKS Missense_Mutation p.E525K 0.24 deleterious(0) probably_damaging(0.996) TCGA-Q1-A73O-01 19 50302075 50302075 G C AP2A1 Missense_Mutation p.K277N 0.24 deleterious(0) possibly_damaging(0.658) TCGA-Q1-A73O-01 19 50412023 50412023 C T NUP62 Missense_Mutation p.E348K 0.26 deleterious(0) possibly_damaging(0.907) TCGA-Q1-A73O-01 19 50554229 50554229 G A ZNF473 3'Flank 0.22 TCGA-Q1-A73O-01 19 50912854 50912854 G C POLD1 Silent p.V695V 0.34 TCGA-Q1-A73O-01 19 50957558 50957558 C T MYBPC2 Missense_Mutation p.S649L 0.25 deleterious(0.03) possibly_damaging(0.804) TCGA-Q1-A73O-01 19 50983986 50983986 C T EMC10 Missense_Mutation p.S184L 0.33 deleterious(0.01) possibly_damaging(0.503) TCGA-Q1-A73O-01 19 5144297 5144297 C T KDM4B Silent p.V925V 0.36 TCGA-Q1-A73O-01 19 5150378 5150378 G C KDM4B Missense_Mutation p.E1011Q 0.17 possibly_damaging(0.727) TCGA-Q1-A73O-01 19 51537307 51537307 G A KLK12 Silent p.G42G 0.25 TCGA-Q1-A73O-01 19 51607737 51607737 G A CTU1 Silent p.F30F 0.30 TCGA-Q1-A73O-01 19 52384091 52384091 C G ZNF577 5'UTR 0.33 TCGA-Q1-A73O-01 19 52447781 52447781 G C ZNF613 Missense_Mutation p.K215N 0.28 deleterious(0) benign(0.246) TCGA-Q1-A73O-01 19 52519812 52519812 C G ZNF614 Missense_Mutation p.E347Q 0.28 deleterious(0.05) probably_damaging(0.998) TCGA-Q1-A73O-01 19 52618221 52618221 G A ZNF616 Silent p.L732L 0.29 TCGA-Q1-A73O-01 19 52888616 52888616 G C ZNF880 3'UTR 0.16 TCGA-Q1-A73O-01 19 52909190 52909190 G C ZNF528 Missense_Mutation p.E16Q 0.24 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 19 52909205 52909205 G C ZNF528 Missense_Mutation p.E21Q 0.23 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 19 53014382 53014382 C T ZNF578 Nonsense_Mutation p.Q250* 0.21 TCGA-Q1-A73O-01 19 53761997 53761997 C G VN1R2 Silent p.S123S 0.34 TCGA-Q1-A73O-01 19 54561966 54561966 C T VSTM1 Missense_Mutation p.D19N 0.34 tolerated(0.07) probably_damaging(0.956) TCGA-Q1-A73O-01 19 54647449 54647449 G C CNOT3 Missense_Mutation p.K74N 0.19 deleterious(0) probably_damaging(0.997) TCGA-Q1-A73O-01 19 54647772 54647772 G A CNOT3 Missense_Mutation p.E97K 0.29 deleterious(0) probably_damaging(0.933) TCGA-Q1-A73O-01 19 54711421 54711421 G C RPS9 Missense_Mutation p.G188A 0.23 tolerated(0.31) unknown(0) TCGA-Q1-A73O-01 19 55496569 55496569 C G NLRP2 Missense_Mutation p.H729D 0.18 tolerated(0.27) benign(0.034) TCGA-Q1-A73O-01 19 55558771 55558771 G A RDH13 Silent p.F248F 0.18 TCGA-Q1-A73O-01 19 55873756 55873756 C G FAM71E2 Missense_Mutation p.E141Q 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-Q1-A73O-01 19 55899502 55899502 G A RPL28 Intron 0.29 TCGA-Q1-A73O-01 19 55899505 55899505 G A RPL28 Intron 0.31 TCGA-Q1-A73O-01 19 55899664 55899664 G A RPL28 Intron 0.26 TCGA-Q1-A73O-01 19 55964642 55964642 G C ISOC2 3'UTR 0.24 TCGA-Q1-A73O-01 19 56226588 56226588 C G NLRP9 Missense_Mutation p.L778F 0.18 deleterious(0.02) benign(0.06) TCGA-Q1-A73O-01 19 56307519 56307519 G A NLRP11 Missense_Mutation p.P757S 0.36 tolerated(0.07) possibly_damaging(0.857) TCGA-Q1-A73O-01 19 56370067 56370067 G T NLRP4 Missense_Mutation p.K436N 0.23 tolerated(0.34) benign(0.042) TCGA-Q1-A73O-01 19 57065070 57065070 G A ZFP28 Missense_Mutation p.E306K 0.22 tolerated(0.21) benign(0.162) TCGA-Q1-A73O-01 19 57325989 57325989 C G PEG3 Missense_Mutation p.R1274T 0.24 tolerated(0.07) possibly_damaging(0.63) TCGA-Q1-A73O-01 19 5785241 5785241 C T DUS3L Silent p.P642P 0.37 TCGA-Q1-A73O-01 19 58058582 58058582 C T ZNF550 Missense_Mutation p.D303N 0.25 deleterious(0.01) benign(0.223) TCGA-Q1-A73O-01 19 58438080 58438080 G A ZNF418 Missense_Mutation p.S490L 0.14 tolerated(0.08) benign(0.005) TCGA-Q1-A73O-01 19 5844386 5844386 G A FUT3 Silent p.L155L 0.22 TCGA-Q1-A73O-01 19 5894779 5894779 C G NDUFA11 Intron 0.16 TCGA-Q1-A73O-01 19 58966544 58966544 G C ZNF324B Intron 0.25 TCGA-Q1-A73O-01 19 5914203 5914203 C G CAPS 5'Flank 0.27 TCGA-Q1-A73O-01 19 5917613 5917613 C T RANBP3 3'UTR 0.44 TCGA-Q1-A73O-01 19 6262272 6262272 G A MLLT1 Silent p.F81F 0.26 TCGA-Q1-A73O-01 19 6441983 6441983 C T SLC25A23 3'UTR 0.22 TCGA-Q1-A73O-01 19 7682532 7682532 G A CAMSAP3 Silent p.K1170K 0.21 TCGA-Q1-A73O-01 19 7794814 7794814 G A CLEC4G Silent p.L212L 0.36 TCGA-Q1-A73O-01 19 8028545 8028545 C G ELAVL1 Missense_Mutation p.G268A 0.31 deleterious(0.02) possibly_damaging(0.463) TCGA-Q1-A73O-01 19 8197937 8197937 C T FBN3 Missense_Mutation p.E549K 0.32 tolerated(0.09) possibly_damaging(0.827) TCGA-Q1-A73O-01 19 8399296 8399296 G A KANK3 Silent p.L445L 0.32 TCGA-Q1-A73O-01 19 9089380 9089380 G A MUC16 Missense_Mutation p.S812F 0.26 unknown(0) TCGA-Q1-A73O-01 19 9091665 9091665 C T MUC16 Silent p.V50V 0.31 TCGA-Q1-A73O-01 19 9271850 9271850 C T ZNF317 Missense_Mutation p.A510V 0.15 deleterious(0.01) possibly_damaging(0.513) TCGA-Q1-A73O-01 19 966846 966846 G C ARID3A Missense_Mutation p.M491I 0.19 deleterious(0) benign(0.118) TCGA-Q1-A73O-01 19 991247 991247 C T WDR18 Missense_Mutation p.S276L 0.23 deleterious(0) possibly_damaging(0.904) TCGA-Q1-A73O-01 1 100154591 100154591 G C PALMD Missense_Mutation p.E259Q 0.45 tolerated(0.06) probably_damaging(0.926) TCGA-Q1-A73O-01 1 100696454 100696454 C G DBT Missense_Mutation p.D90H 0.26 deleterious(0) probably_damaging(0.997) TCGA-Q1-A73O-01 1 1017787 1017787 G T C1orf159 3'UTR 0.31 TCGA-Q1-A73O-01 1 102290645 102290645 C G OLFM3 Missense_Mutation p.E177Q 0.26 tolerated(0.45) benign(0.222) TCGA-Q1-A73O-01 1 103474021 103474021 G A COL11A1 Nonsense_Mutation p.Q561* 0.24 TCGA-Q1-A73O-01 1 103474059 103474059 G A COL11A1 Missense_Mutation p.S548L 0.25 unknown(0) TCGA-Q1-A73O-01 1 10510126 10510126 T C CORT 5'UTR 0.24 TCGA-Q1-A73O-01 1 110585817 110585817 G A STRIP1 Missense_Mutation p.M331I 0.25 deleterious(0.04) probably_damaging(0.954) TCGA-Q1-A73O-01 1 1111486 1111486 C G TTLL10 Intron 0.25 TCGA-Q1-A73O-01 1 111506249 111506249 G A LRIF1 Missense_Mutation p.S21L 0.22 deleterious(0.01) possibly_damaging(0.519) TCGA-Q1-A73O-01 1 111989714 111989714 C T WDR77 Intron 0.20 TCGA-Q1-A73O-01 1 111992026 111992026 C A ATP5F1 5'UTR 0.20 TCGA-Q1-A73O-01 1 114340197 114340197 C G RSBN1 Missense_Mutation p.E389Q 0.19 tolerated(0.18) probably_damaging(0.994) TCGA-Q1-A73O-01 1 114440589 114440589 G A AP4B1 Intron 0.30 TCGA-Q1-A73O-01 1 114445444 114445444 C G AP4B1 Missense_Mutation p.E52Q 0.29 deleterious(0.01) probably_damaging(0.978) TCGA-Q1-A73O-01 1 114939978 114939978 A T TRIM33 3'UTR 0.39 TCGA-Q1-A73O-01 1 114939982 114939982 C G TRIM33 3'UTR 0.39 TCGA-Q1-A73O-01 1 115153695 115153695 C G DENND2C Missense_Mutation p.K456N 0.26 deleterious(0.01) benign(0.382) TCGA-Q1-A73O-01 1 117527316 117527316 G A PTGFRN Missense_Mutation p.D728N 0.24 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 1 118170900 118170900 G C FAM46C 3'UTR 0.26 TCGA-Q1-A73O-01 1 118461268 118461268 G A GDAP2 Silent p.I89I 0.19 TCGA-Q1-A73O-01 1 11863158 11863158 T C MTHFR Missense_Mutation p.R6G 0.37 tolerated_low_confidence(0.05) benign(0) TCGA-Q1-A73O-01 1 119923791 119923791 G C HAO2 Missense_Mutation p.G28A 0.33 deleterious(0.02) possibly_damaging(0.558) TCGA-Q1-A73O-01 1 120927232 120927232 C T FCGR1B Missense_Mutation p.D250N 0.19 tolerated_low_confidence(0.12) benign(0.058) TCGA-Q1-A73O-01 1 1215990 1215990 C G SCNN1D 5'UTR 0.17 TCGA-Q1-A73O-01 1 12169642 12169642 G A TNFRSF8 Silent p.T147T 0.24 TCGA-Q1-A73O-01 1 1354439 1354439 G A ANKRD65 3'UTR 0.25 TCGA-Q1-A73O-01 1 13743092 13743092 G A PRAMEF20 Missense_Mutation p.R94H 0.31 tolerated(0.37) benign(0.006) TCGA-Q1-A73O-01 1 14150861 14150861 G C PRDM2 3'UTR 0.32 TCGA-Q1-A73O-01 1 1418031 1418031 G A ATAD3B Intron 0.26 TCGA-Q1-A73O-01 1 144816606 144816606 G C NBPF9 Missense_Mutation p.D246H 0.21 tolerated(0.08) probably_damaging(0.997) TCGA-Q1-A73O-01 1 144856866 144856866 G C PDE4DIP Missense_Mutation p.L2207V 0.13 tolerated(0.06) possibly_damaging(0.46) TCGA-Q1-A73O-01 1 144931628 144931628 G C PDE4DIP Intron 0.15 TCGA-Q1-A73O-01 1 145538296 145538296 C T ITGA10 Silent p.L941L 0.33 TCGA-Q1-A73O-01 1 149906184 149906184 G C MTMR11 Missense_Mutation p.L195V 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-Q1-A73O-01 1 150429953 150429953 G A RPRD2 Missense_Mutation p.E354K 0.30 tolerated_low_confidence(0.21) benign(0.05) TCGA-Q1-A73O-01 1 152084526 152084526 C G TCHH Silent p.L389L 0.38 TCGA-Q1-A73O-01 1 152287172 152287172 C G FLG Missense_Mutation p.D64H 0.13 benign(0.031) TCGA-Q1-A73O-01 1 153657530 153657530 G A NPR1 Silent p.R525R 0.20 TCGA-Q1-A73O-01 1 153658665 153658665 G C NPR1 Missense_Mutation p.E583Q 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-Q1-A73O-01 1 153735821 153735821 C G INTS3 Silent p.L583L 0.20 TCGA-Q1-A73O-01 1 154687435 154687435 G A KCNN3 Silent p.I582I 0.22 TCGA-Q1-A73O-01 1 154935308 154935308 G C SHC1 3'UTR 0.22 TCGA-Q1-A73O-01 1 155020372 155020372 C T DCST1 Silent p.L574L 0.21 TCGA-Q1-A73O-01 1 155030783 155030783 A T ADAM15 Missense_Mutation p.I595F 0.29 deleterious(0.04) benign(0.251) TCGA-Q1-A73O-01 1 155030785 155030785 C T ADAM15 Silent p.I595I 0.29 TCGA-Q1-A73O-01 1 155239463 155239463 C T CLK2 Missense_Mutation p.R72Q 0.22 deleterious(0.02) unknown(0) TCGA-Q1-A73O-01 1 155288527 155288527 C T FDPS Silent p.V252V 0.31 TCGA-Q1-A73O-01 1 155290320 155290320 C G FDPS Missense_Mutation p.L394V 0.14 deleterious(0.02) possibly_damaging(0.819) TCGA-Q1-A73O-01 1 155580427 155580427 C T MSTO1 Intron 0.12 TCGA-Q1-A73O-01 1 155718099 155718099 C T GON4L 3'Flank 0.17 TCGA-Q1-A73O-01 1 155917797 155917797 C G ARHGEF2 Missense_Mutation p.R966T 0.21 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-Q1-A73O-01 1 156181497 156181497 C G SLC25A44 3'UTR 0.16 TCGA-Q1-A73O-01 1 156214007 156214007 G A PAQR6 Missense_Mutation p.S234L 0.28 deleterious_low_confidence(0) unknown(0) TCGA-Q1-A73O-01 1 156219817 156219817 C G SMG5 3'UTR 0.38 TCGA-Q1-A73O-01 1 156220033 156220033 C T SMG5 3'UTR 0.41 TCGA-Q1-A73O-01 1 15644317 15644317 C T FHAD1 Intron 0.23 TCGA-Q1-A73O-01 1 15905370 15905370 C T AGMAT Missense_Mutation p.R235K 0.25 tolerated(0.59) benign(0.002) TCGA-Q1-A73O-01 1 159810561 159810561 G A C1orf204 Nonsense_Mutation p.Q180* 0.18 TCGA-Q1-A73O-01 1 160249105 160249105 G C PEX19 3'UTR 0.20 TCGA-Q1-A73O-01 1 160249182 160249182 G - PEX19 3'UTR 0.30 TCGA-Q1-A73O-01 1 160261692 160261692 C T COPA Missense_Mutation p.E1068K 0.22 deleterious(0) probably_damaging(0.968) TCGA-Q1-A73O-01 1 161198547 161198547 G C TOMM40L Missense_Mutation p.D243H 0.31 deleterious(0) probably_damaging(0.961) TCGA-Q1-A73O-01 1 161594320 161594320 C T FCGR3B Silent p.V265V 0.26 TCGA-Q1-A73O-01 1 16268388 16268388 C G ZBTB17 3'UTR 0.17 TCGA-Q1-A73O-01 1 16268529 16268529 C T ZBTB17 Missense_Mutation p.E783K 0.15 tolerated_low_confidence(0.07) benign(0.021) TCGA-Q1-A73O-01 1 16269081 16269081 C T ZBTB17 Missense_Mutation p.D661N 0.20 deleterious(0.03) probably_damaging(0.98) TCGA-Q1-A73O-01 1 16269105 16269105 C T ZBTB17 Missense_Mutation p.E653K 0.14 tolerated(0.08) probably_damaging(0.952) TCGA-Q1-A73O-01 1 16269117 16269117 C T ZBTB17 Missense_Mutation p.E649K 0.19 tolerated(0.3) probably_damaging(0.955) TCGA-Q1-A73O-01 1 16269231 16269231 C G ZBTB17 Missense_Mutation p.E611Q 0.25 deleterious(0) probably_damaging(0.992) TCGA-Q1-A73O-01 1 16270203 16270203 C T ZBTB17 Silent p.L489L 0.26 TCGA-Q1-A73O-01 1 16270867 16270867 C G ZBTB17 Missense_Mutation p.K433N 0.12 deleterious(0.03) probably_damaging(0.977) TCGA-Q1-A73O-01 1 16271564 16271564 C T ZBTB17 Silent p.E265E 0.15 TCGA-Q1-A73O-01 1 16271569 16271569 C T ZBTB17 Missense_Mutation p.E264K 0.13 deleterious_low_confidence(0.04) probably_damaging(0.935) TCGA-Q1-A73O-01 1 16271600 16271600 C T ZBTB17 Silent p.E253E 0.13 TCGA-Q1-A73O-01 1 16271638 16271638 C G ZBTB17 Missense_Mutation p.E241Q 0.14 tolerated_low_confidence(0.13) benign(0.047) TCGA-Q1-A73O-01 1 16272374 16272374 C T ZBTB17 Intron 0.11 TCGA-Q1-A73O-01 1 16274987 16274987 C A ZBTB17 Missense_Mutation p.D2Y 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-Q1-A73O-01 1 16355708 16355708 G A CLCNKA Missense_Mutation p.E381K 0.27 tolerated(0.05) benign(0.02) TCGA-Q1-A73O-01 1 16455987 16455987 C T EPHA2 Missense_Mutation p.E923K 0.32 deleterious(0) probably_damaging(0.989) TCGA-Q1-A73O-01 1 165171201 165171201 C G LMX1A 3'UTR 0.33 TCGA-Q1-A73O-01 1 16528973 16528973 G A ARHGEF19 Silent p.F668F 0.29 TCGA-Q1-A73O-01 1 16528979 16528979 G C ARHGEF19 Missense_Mutation p.H666Q 0.30 tolerated(0.2) benign(0.033) TCGA-Q1-A73O-01 1 165551154 165551154 G C RP11-280O1.2 RNA 0.24 TCGA-Q1-A73O-01 1 16558761 16558761 C T RSG1 Missense_Mutation p.E187K 0.22 deleterious(0.04) benign(0.251) TCGA-Q1-A73O-01 1 167095628 167095628 G C DUSP27 Missense_Mutation p.E420D 0.16 tolerated(0.28) benign(0.002) TCGA-Q1-A73O-01 1 16736453 16736453 C T SPATA21 Missense_Mutation p.S77N 0.30 tolerated(1) benign(0.001) TCGA-Q1-A73O-01 1 167673909 167673909 T C RCSD1 Silent p.T409T 0.25 TCGA-Q1-A73O-01 1 167823649 167823649 G C ADCY10 Silent p.L750L 0.34 TCGA-Q1-A73O-01 1 16812997 16812997 C T CROCCP3 RNA 0.27 TCGA-Q1-A73O-01 1 16903906 16903906 C G NBPF1 Missense_Mutation p.E604Q 0.08 tolerated(0.08) probably_damaging(0.941) TCGA-Q1-A73O-01 1 170136706 170136706 G A METTL11B Silent p.L220L 0.23 TCGA-Q1-A73O-01 1 170695370 170695370 C T PRRX1 Nonsense_Mutation p.Q143* 0.26 TCGA-Q1-A73O-01 1 17256921 17256921 C T CROCC Intron 0.23 TCGA-Q1-A73O-01 1 17313385 17313385 G C ATP13A2 Silent p.V1050V 0.22 TCGA-Q1-A73O-01 1 173808631 173808631 G A DARS2 Missense_Mutation p.E323K 0.23 deleterious(0.02) possibly_damaging(0.864) TCGA-Q1-A73O-01 1 17597379 17597379 C T PADI3 Silent p.F279F 0.27 TCGA-Q1-A73O-01 1 17597449 17597449 C G PADI3 Missense_Mutation p.L303V 0.24 tolerated(0.16) possibly_damaging(0.79) TCGA-Q1-A73O-01 1 176758970 176758970 G A PAPPA2 Missense_Mutation p.E1581K 0.16 deleterious(0.02) possibly_damaging(0.869) TCGA-Q1-A73O-01 1 176832343 176832343 G C ASTN1 3'UTR 0.20 TCGA-Q1-A73O-01 1 176838140 176838140 G C ASTN1 Missense_Mutation p.L1163V 0.23 deleterious(0) probably_damaging(0.994) TCGA-Q1-A73O-01 1 180907775 180907775 C G KIAA1614 Nonsense_Mutation p.S949* 0.30 TCGA-Q1-A73O-01 1 181058848 181058848 C T IER5 Silent p.I270I 0.32 TCGA-Q1-A73O-01 1 183217460 183217460 C G NMNAT2 3'UTR 0.28 TCGA-Q1-A73O-01 1 1847898 1847898 G A CALML6 Missense_Mutation p.E33K 0.38 deleterious(0.05) benign(0.004) TCGA-Q1-A73O-01 1 186050494 186050494 C T HMCN1 Missense_Mutation p.H2919Y 0.26 possibly_damaging(0.676) TCGA-Q1-A73O-01 1 186275597 186275597 C T PRG4 Missense_Mutation p.S249F 0.32 probably_damaging(0.929) TCGA-Q1-A73O-01 1 186286656 186286656 G C TPR Missense_Mutation p.L2300V 0.28 possibly_damaging(0.745) TCGA-Q1-A73O-01 1 190130001 190130001 C T BRINP3 Missense_Mutation p.M327I 0.16 tolerated(0.08) benign(0.001) TCGA-Q1-A73O-01 1 19180795 19180795 G C TAS1R2 Missense_Mutation p.S390C 0.26 deleterious(0) probably_damaging(0.954) TCGA-Q1-A73O-01 1 19490755 19490755 C T UBR4 Silent p.L1564L 0.49 TCGA-Q1-A73O-01 1 197070687 197070687 C T ASPM Missense_Mutation p.R2565K 0.11 tolerated(0.21) benign(0.053) TCGA-Q1-A73O-01 1 197886645 197886645 C T LHX9 5'UTR 0.26 TCGA-Q1-A73O-01 1 200522698 200522698 C G KIF14 Missense_Mutation p.D1589H 0.20 tolerated(0.12) benign(0.268) TCGA-Q1-A73O-01 1 201835972 201835972 C G IPO9 Silent p.L580L 0.32 TCGA-Q1-A73O-01 1 201859683 201859683 G A SHISA4 Missense_Mutation p.R116H 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-Q1-A73O-01 1 201981119 201981119 C G ELF3 Missense_Mutation p.F66L 0.40 tolerated(0.66) benign(0.003) TCGA-Q1-A73O-01 1 20216933 20216933 C G OTUD3 Missense_Mutation p.L93V 0.25 tolerated(0.05) benign(0.132) TCGA-Q1-A73O-01 1 202288144 202288144 C T LGR6 Nonsense_Mutation p.Q905* 0.36 TCGA-Q1-A73O-01 1 20230837 20230837 G A OTUD3 Silent p.L228L 0.15 TCGA-Q1-A73O-01 1 20234122 20234122 G C OTUD3 Missense_Mutation p.E360D 0.21 deleterious(0.03) benign(0.077) TCGA-Q1-A73O-01 1 203765597 203765597 G A ZC3H11A 5'Flank 0.22 TCGA-Q1-A73O-01 1 203821344 203821344 G A ZC3H11A Missense_Mutation p.M750I 0.27 tolerated(0.3) benign(0.003) TCGA-Q1-A73O-01 1 203821538 203821538 G A ZC3H11A 3'UTR 0.31 TCGA-Q1-A73O-01 1 203821928 203821928 G A ZC3H11A 3'UTR 0.13 TCGA-Q1-A73O-01 1 204438303 204438303 C T PIK3C2B Missense_Mutation p.E210K 0.39 deleterious_low_confidence(0.02) benign(0.119) TCGA-Q1-A73O-01 1 204588128 204588128 G C LRRN2 Missense_Mutation p.F331L 0.16 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 1 205273176 205273176 C G NUAK2 Missense_Mutation p.S430T 0.21 tolerated(0.22) benign(0.003) TCGA-Q1-A73O-01 1 205275364 205275364 G C NUAK2 Silent p.L214L 0.21 TCGA-Q1-A73O-01 1 205275402 205275402 G C NUAK2 Missense_Mutation p.Q202E 0.20 tolerated(0.26) benign(0.174) TCGA-Q1-A73O-01 1 20674846 20674846 G A VWA5B1 Missense_Mutation p.G957E 0.29 tolerated(0.11) benign(0.093) TCGA-Q1-A73O-01 1 208219282 208219282 C T PLXNA2 Missense_Mutation p.E1146K 0.31 deleterious(0.03) probably_damaging(0.982) TCGA-Q1-A73O-01 1 21133411 21133411 C G EIF4G3 3'UTR 0.20 TCGA-Q1-A73O-01 1 2121049 2121049 G A C1orf86 3'UTR 0.35 TCGA-Q1-A73O-01 1 212535013 212535013 G C PPP2R5A 3'UTR 0.08 TCGA-Q1-A73O-01 1 214531146 214531146 G A PTPN14 3'UTR 0.31 TCGA-Q1-A73O-01 1 21494455 21494455 G A EIF4G3 Intron 0.32 TCGA-Q1-A73O-01 1 216880805 216880805 C T ESRRG 5'UTR 0.25 TCGA-Q1-A73O-01 1 217688174 217688174 G T GPATCH2 Missense_Mutation p.H386N 0.20 deleterious(0.02) benign(0.24) TCGA-Q1-A73O-01 1 217688182 217688182 G A GPATCH2 Missense_Mutation p.P383L 0.20 tolerated(0.3) possibly_damaging(0.536) TCGA-Q1-A73O-01 1 220091631 220091631 C T SLC30A10 Silent p.Q308Q 0.17 TCGA-Q1-A73O-01 1 220206942 220206942 G A EPRS Missense_Mutation p.S97F 0.26 deleterious(0.02) benign(0.197) TCGA-Q1-A73O-01 1 220363789 220363789 G A RAB3GAP2 Nonsense_Mutation p.Q521* 0.24 TCGA-Q1-A73O-01 1 22161247 22161247 C A HSPG2 Missense_Mutation p.D3549Y 0.24 probably_damaging(1) TCGA-Q1-A73O-01 1 22170719 22170719 C G HSPG2 Silent p.L2846L 0.24 TCGA-Q1-A73O-01 1 22202129 22202129 C T HSPG2 Missense_Mutation p.E1099K 0.32 benign(0.392) TCGA-Q1-A73O-01 1 22202741 22202741 G C HSPG2 Nonsense_Mutation p.S995* 0.33 TCGA-Q1-A73O-01 1 222802018 222802018 G C MIA3 Missense_Mutation p.E486Q 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-Q1-A73O-01 1 22329499 22329499 C T CELA3A Missense_Mutation p.S16L 0.55 tolerated(0.65) unknown(0) TCGA-Q1-A73O-01 1 224377971 224377971 C T DEGS1 Missense_Mutation p.H259Y 0.21 deleterious(0) probably_damaging(0.995) TCGA-Q1-A73O-01 1 225445752 225445752 G A DNAH14 Missense_Mutation p.R2313K 0.20 probably_damaging(0.915) TCGA-Q1-A73O-01 1 226179020 226179020 C T SDE2 Missense_Mutation p.E189K 0.32 tolerated(0.23) benign(0.143) TCGA-Q1-A73O-01 1 226497409 226497409 C T LIN9 5'UTR 0.32 TCGA-Q1-A73O-01 1 226561959 226561959 C G PARP1 Missense_Mutation p.E680Q 0.23 tolerated(0.11) benign(0.046) TCGA-Q1-A73O-01 1 22835630 22835630 G C ZBTB40 Silent p.L579L 0.31 TCGA-Q1-A73O-01 1 228645291 228645291 C G HIST3H2A Missense_Mutation p.K76N 0.24 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-Q1-A73O-01 1 22974165 22974165 G A C1QC Silent p.L209L 0.29 TCGA-Q1-A73O-01 1 22974171 22974171 G A C1QC Silent p.L211L 0.27 TCGA-Q1-A73O-01 1 23236890 23236890 G A EPHB2 Missense_Mutation p.E841K 0.19 deleterious(0) possibly_damaging(0.902) TCGA-Q1-A73O-01 1 235658103 235658103 G C B3GALNT2 Missense_Mutation p.H50D 0.25 deleterious(0.04) benign(0.439) TCGA-Q1-A73O-01 1 235850285 235850285 G A LYST Silent p.V3588V 0.31 TCGA-Q1-A73O-01 1 237433906 237433906 C T RYR2 Missense_Mutation p.S53F 0.13 possibly_damaging(0.828) TCGA-Q1-A73O-01 1 24022845 24022845 C T RPL11 Silent p.I173I 0.37 TCGA-Q1-A73O-01 1 240256666 240256666 C G FMN2 Missense_Mutation p.I419M 0.29 unknown(0) TCGA-Q1-A73O-01 1 241032110 241032110 C T RGS7 Missense_Mutation p.E165K 0.26 deleterious(0) probably_damaging(0.984) TCGA-Q1-A73O-01 1 241920750 241920750 C T WDR64 Nonsense_Mutation p.Q636* 0.20 TCGA-Q1-A73O-01 1 243858901 243858901 G A AKT3 Missense_Mutation p.S55L 0.29 tolerated(0.05) probably_damaging(0.999) TCGA-Q1-A73O-01 1 244586142 244586143 - TT ADSS Frame_Shift_Ins p.L220Nfs*13 0.19 TCGA-Q1-A73O-01 1 249105132 249105132 G A SH3BP5L 3'UTR 0.21 TCGA-Q1-A73O-01 1 249150111 249150111 G A ZNF692 Missense_Mutation p.P237S 0.18 tolerated(0.09) benign(0.064) TCGA-Q1-A73O-01 1 26774087 26774087 C G DHDDS Missense_Mutation p.H160D 0.35 tolerated(1) benign(0.001) TCGA-Q1-A73O-01 1 27099314 27099314 C T ARID1A Missense_Mutation p.S1184L 0.19 benign(0.184) TCGA-Q1-A73O-01 1 27267965 27267965 C T NUDC Silent p.F59F 0.18 TCGA-Q1-A73O-01 1 27941981 27941981 C T FGR Missense_Mutation p.E328K 0.44 deleterious(0) benign(0.145) TCGA-Q1-A73O-01 1 28165230 28165230 G C PPP1R8 Missense_Mutation p.K46N 0.19 deleterious(0.04) probably_damaging(0.928) TCGA-Q1-A73O-01 1 28816356 28816356 G A PHACTR4 Intron 0.31 TCGA-Q1-A73O-01 1 28835342 28835342 G A SNORA73B 3'Flank 0.19 TCGA-Q1-A73O-01 1 29096110 29096110 C T YTHDF2 3'UTR 0.30 TCGA-Q1-A73O-01 1 31840308 31840308 G A FABP3 Missense_Mutation p.H94Y 0.23 deleterious(0) probably_damaging(0.986) TCGA-Q1-A73O-01 1 35496238 35496238 C G ZMYM6 Translation_Start_Site p.M1? 0.11 deleterious(0) probably_damaging(0.958) TCGA-Q1-A73O-01 1 35649325 35649325 C G SFPQ 3'UTR 0.24 TCGA-Q1-A73O-01 1 36470034 36470034 C G AGO3 Missense_Mutation p.L251V 0.36 deleterious(0) probably_damaging(0.915) TCGA-Q1-A73O-01 1 36479634 36479634 G C AGO3 Missense_Mutation p.R464T 0.24 tolerated(0.31) benign(0.002) TCGA-Q1-A73O-01 1 36785319 36785319 G A SH3D21 Missense_Mutation p.R352K 0.24 tolerated(1) benign(0.018) TCGA-Q1-A73O-01 1 36809771 36809771 G A STK40 Silent p.I278I 0.21 TCGA-Q1-A73O-01 1 38041233 38041233 G C GNL2 Missense_Mutation p.S369C 0.11 deleterious(0.04) possibly_damaging(0.695) TCGA-Q1-A73O-01 1 39815296 39815296 G C MACF1 Missense_Mutation p.L1592F 0.42 benign(0.044) TCGA-Q1-A73O-01 1 39877313 39877313 C G KIAA0754 Missense_Mutation p.S323C 0.44 benign(0.423) TCGA-Q1-A73O-01 1 40431611 40431611 C T MFSD2A Silent p.F226F 0.20 TCGA-Q1-A73O-01 1 42865153 42865153 C T RIMKLA Missense_Mutation p.S81L 0.35 tolerated(0.21) benign(0.212) TCGA-Q1-A73O-01 1 43217983 43217983 C T LEPRE1 Missense_Mutation p.E511K 0.30 deleterious(0) probably_damaging(0.994) TCGA-Q1-A73O-01 1 44071938 44071938 G C PTPRF Missense_Mutation p.E1171Q 0.30 tolerated(0.35) benign(0.001) TCGA-Q1-A73O-01 1 44089323 44089323 C T PTPRF 3'UTR 0.44 TCGA-Q1-A73O-01 1 44442474 44442474 C T ATP6V0B Silent p.I126I 0.38 TCGA-Q1-A73O-01 1 45809796 45809796 G T TESK2 3'UTR 0.29 TCGA-Q1-A73O-01 1 46086415 46086415 C A CCDC17 Nonsense_Mutation p.E564* 0.32 TCGA-Q1-A73O-01 1 46425105 46425105 C T MAST2 Missense_Mutation p.S183L 0.25 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-Q1-A73O-01 1 46726987 46726987 C G RAD54L Missense_Mutation p.S274C 0.33 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 1 47024134 47024134 G C MKNK1 3'UTR 0.25 TCGA-Q1-A73O-01 1 47904257 47904257 G C FOXD2 Missense_Mutation p.L150F 0.28 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 1 52117690 52117690 C T OSBPL9 Missense_Mutation p.R47C 0.35 deleterious(0) probably_damaging(0.996) TCGA-Q1-A73O-01 1 52277771 52277771 C T NRD1 Splice_Site p.X627_splice 0.24 TCGA-Q1-A73O-01 1 53580642 53580642 C G SLC1A7 Missense_Mutation p.L73F 0.19 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 1 54262395 54262395 C G NDC1 Silent p.V517V 0.30 TCGA-Q1-A73O-01 1 54262801 54262801 C T NDC1 Silent p.Q413Q 0.37 TCGA-Q1-A73O-01 1 54269617 54269617 G C NDC1 Missense_Mutation p.F350L 0.26 deleterious(0) probably_damaging(0.991) TCGA-Q1-A73O-01 1 55680734 55680734 G C USP24 Nonsense_Mutation p.S18* 0.31 TCGA-Q1-A73O-01 1 57185933 57185933 C T C1orf168 Missense_Mutation p.D682N 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-Q1-A73O-01 1 58946831 58946831 C T OMA1 Missense_Mutation p.E461K 0.26 tolerated(0.07) benign(0.008) TCGA-Q1-A73O-01 1 60377293 60377293 G A CYP2J2 Missense_Mutation p.S224L 0.16 deleterious(0.01) benign(0.41) TCGA-Q1-A73O-01 1 6154520 6154520 C T KCNAB2 Missense_Mutation p.S236L 0.25 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 1 61554153 61554153 C T NFIA Silent p.L165L 0.14 TCGA-Q1-A73O-01 1 61554154 61554154 C T NFIA Missense_Mutation p.R166C 0.14 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 1 63001290 63001290 G T DOCK7 Missense_Mutation p.S1131Y 0.27 tolerated(0.12) possibly_damaging(0.511) TCGA-Q1-A73O-01 1 65099937 65099937 C T CACHD1 Nonsense_Mutation p.Q283* 0.37 TCGA-Q1-A73O-01 1 65137258 65137258 C T CACHD1 Missense_Mutation p.S749F 0.30 deleterious(0.03) benign(0.295) TCGA-Q1-A73O-01 1 65157442 65157442 G A CACHD1 3'UTR 0.50 TCGA-Q1-A73O-01 1 65157586 65157586 G C CACHD1 3'UTR 0.35 TCGA-Q1-A73O-01 1 65858183 65858183 C G DNAJC6 Nonsense_Mutation p.S513* 0.39 TCGA-Q1-A73O-01 1 6637120 6637120 C T TAS1R1 Silent p.L528L 0.24 TCGA-Q1-A73O-01 1 6638937 6638937 C T TAS1R1 Missense_Mutation p.L607F 0.18 tolerated(0.21) benign(0.248) TCGA-Q1-A73O-01 1 6681563 6681563 C T PHF13 Missense_Mutation p.H257Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 1 67558311 67558311 G C C1orf141 3'UTR 0.16 TCGA-Q1-A73O-01 1 68512845 68512845 C T DIRAS3 Missense_Mutation p.A46T 0.29 deleterious(0.02) possibly_damaging(0.611) TCGA-Q1-A73O-01 1 70701226 70701226 G C SRSF11 Missense_Mutation p.D195H 0.30 deleterious(0.01) unknown(0) TCGA-Q1-A73O-01 1 78098460 78098460 C T ZZZ3 Missense_Mutation p.E194K 0.32 tolerated(0.2) benign(0.223) TCGA-Q1-A73O-01 1 78245412 78245412 G A FAM73A Silent p.L24L 0.25 TCGA-Q1-A73O-01 1 82416115 82416115 C T LPHN2 Nonsense_Mutation p.Q481* 0.25 TCGA-Q1-A73O-01 1 89447813 89447813 G A RBMXL1 3'UTR 0.28 TCGA-Q1-A73O-01 1 89520389 89520389 C G GBP1 Missense_Mutation p.E547D 0.27 tolerated(0.13) probably_damaging(0.962) TCGA-Q1-A73O-01 1 89524581 89524581 C T GBP1 Missense_Mutation p.D192N 0.16 tolerated(0.52) benign(0.001) TCGA-Q1-A73O-01 1 897278 897278 C T KLHL17 Nonsense_Mutation p.Q188* 0.26 TCGA-Q1-A73O-01 1 92195496 92195496 C T TGFBR3 Silent p.K201K 0.23 TCGA-Q1-A73O-01 1 92470029 92470029 C T BRDT Missense_Mutation p.S816L 0.27 deleterious(0.05) possibly_damaging(0.548) TCGA-Q1-A73O-01 1 93302932 93302932 G C RPL5 Intron 0.18 TCGA-Q1-A73O-01 1 94018798 94018798 C G FNBP1L 3'UTR 0.23 TCGA-Q1-A73O-01 1 94946072 94946072 G A ABCD3 Missense_Mutation p.R246Q 0.21 tolerated(0.27) benign(0.042) TCGA-Q1-A73O-01 1 99774928 99774928 G A LPPR4 3'UTR 0.16 TCGA-Q1-A73O-01 20 1161978 1161978 G A TMEM74B Silent p.P95P 0.26 TCGA-Q1-A73O-01 20 23029751 23029751 G A THBD Missense_Mutation p.P131S 0.24 tolerated(0.07) benign(0.141) TCGA-Q1-A73O-01 20 25038603 25038603 G A ACSS1 Missense_Mutation p.P46S 0.33 tolerated(0.08) possibly_damaging(0.641) TCGA-Q1-A73O-01 20 25459789 25459789 C T NINL Silent p.E657E 0.39 TCGA-Q1-A73O-01 20 25745581 25745581 C G FAM182B 3'UTR 0.21 TCGA-Q1-A73O-01 20 30659523 30659523 G A HCK Missense_Mutation p.E41K 0.29 tolerated(0.25) benign(0.025) TCGA-Q1-A73O-01 20 308202 308202 C T SOX12 3'UTR 0.39 TCGA-Q1-A73O-01 20 308491 308491 C T SOX12 3'UTR 0.34 TCGA-Q1-A73O-01 20 30919169 30919169 G A KIF3B 3'UTR 0.33 TCGA-Q1-A73O-01 20 30919171 30919171 G A KIF3B 3'UTR 0.34 TCGA-Q1-A73O-01 20 31656710 31656710 C T BPIFB3 Silent p.L360L 0.11 TCGA-Q1-A73O-01 20 31699338 31699338 C T BPIFB4 3'UTR 0.22 TCGA-Q1-A73O-01 20 33148566 33148566 C T PIGU 3'UTR 0.31 TCGA-Q1-A73O-01 20 3354736 3354736 C G C20orf194 Missense_Mutation p.E191Q 0.34 deleterious(0) probably_damaging(0.969) TCGA-Q1-A73O-01 20 34191046 34191046 C T FER1L4 RNA 0.22 TCGA-Q1-A73O-01 20 34213974 34213974 C T CPNE1 3'UTR 0.50 TCGA-Q1-A73O-01 20 34329876 34329876 C T RBM39 5'Flank 0.29 TCGA-Q1-A73O-01 20 34599162 34599162 G C CNBD2 Missense_Mutation p.E418Q 0.18 tolerated(0.28) benign(0.108) TCGA-Q1-A73O-01 20 35350135 35350135 C T NDRG3 Missense_Mutation p.D2N 0.26 tolerated(0.21) benign(0.005) TCGA-Q1-A73O-01 20 35415003 35415003 G A SOGA1 Missense_Mutation p.S1624F 0.17 deleterious(0) possibly_damaging(0.749) TCGA-Q1-A73O-01 20 35415008 35415008 G A SOGA1 Silent p.L1622L 0.16 TCGA-Q1-A73O-01 20 35445844 35445844 G A SOGA1 Missense_Mutation p.S367F 0.23 deleterious(0.02) probably_damaging(0.947) TCGA-Q1-A73O-01 20 35742513 35742513 G C MROH8 Silent p.L884L 0.26 TCGA-Q1-A73O-01 20 35945637 35945637 G A MANBAL 3'UTR 0.25 TCGA-Q1-A73O-01 20 36149672 36149672 C T NNAT 5'UTR 0.27 TCGA-Q1-A73O-01 20 36718669 36718669 C G RPRD1B 3'UTR 0.40 TCGA-Q1-A73O-01 20 36720761 36720761 G A RPRD1B 3'UTR 0.32 TCGA-Q1-A73O-01 20 37531352 37531352 G A PPP1R16B Missense_Mutation p.E205K 0.35 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 20 3842980 3842980 C G MAVS Missense_Mutation p.S182C 0.28 deleterious(0.04) benign(0.181) TCGA-Q1-A73O-01 20 3846609 3846609 G C MAVS Missense_Mutation p.E480Q 0.24 tolerated(0.22) benign(0.054) TCGA-Q1-A73O-01 20 39793956 39793956 C G PLCG1 Missense_Mutation p.I486M 0.29 deleterious(0.03) possibly_damaging(0.707) TCGA-Q1-A73O-01 20 39803465 39803465 G A PLCG1 3'UTR 0.23 TCGA-Q1-A73O-01 20 39803532 39803532 G A PLCG1 3'UTR 0.30 TCGA-Q1-A73O-01 20 4168036 4168036 C G SMOX Silent p.L550L 0.35 TCGA-Q1-A73O-01 20 43384693 43384693 C A RIMS4 3'UTR 0.21 TCGA-Q1-A73O-01 20 43580609 43580609 C G TOMM34 Missense_Mutation p.E139Q 0.42 tolerated(0.13) benign(0.009) TCGA-Q1-A73O-01 20 44054549 44054549 C G PIGT 3'UTR 0.29 TCGA-Q1-A73O-01 20 44640260 44640260 C A MMP9 Missense_Mutation p.P291T 0.30 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 20 44640373 44640373 C T MMP9 Silent p.F328F 0.15 TCGA-Q1-A73O-01 20 44695767 44695767 C T NCOA5 Missense_Mutation p.E186K 0.26 deleterious(0.01) possibly_damaging(0.886) TCGA-Q1-A73O-01 20 464391 464391 G A CSNK2A1 3'UTR 0.29 TCGA-Q1-A73O-01 20 47276504 47276504 G C PREX1 Missense_Mutation p.R612G 0.19 deleterious(0) benign(0.373) TCGA-Q1-A73O-01 20 47582435 47582435 G A ARFGEF2 Missense_Mutation p.E312K 0.24 tolerated(0.23) benign(0.001) TCGA-Q1-A73O-01 20 50179163 50179163 C T NFATC2 Silent p.Q2Q 0.29 TCGA-Q1-A73O-01 20 5169736 5169736 C T CDS2 Silent p.F335F 0.22 TCGA-Q1-A73O-01 20 5538677 5538677 G A GPCPD1 Silent p.V581V 0.17 TCGA-Q1-A73O-01 20 57020428 57020428 G A VAPB 3'UTR 0.23 TCGA-Q1-A73O-01 20 5753632 5753632 G A C20orf196 Missense_Mutation p.E41K 0.29 tolerated(0.08) benign(0.059) TCGA-Q1-A73O-01 20 61391744 61391744 G A NTSR1 3'UTR 0.38 TCGA-Q1-A73O-01 20 62340158 62340158 G A ZGPAT Missense_Mutation p.D76N 0.24 deleterious(0.03) benign(0.066) TCGA-Q1-A73O-01 20 62705602 62705602 G A RGS19 Silent p.F119F 0.29 TCGA-Q1-A73O-01 20 8130983 8130983 C G PLCB1 Missense_Mutation p.Q48E 0.26 tolerated(0.09) benign(0.012) TCGA-Q1-A73O-01 20 8745835 8745835 G A PLCB1 Silent p.V920V 0.31 TCGA-Q1-A73O-01 20 896891 896891 C G ANGPT4 5'UTR 0.35 TCGA-Q1-A73O-01 21 28315804 28315804 C T ADAMTS5 Missense_Mutation p.E434K 0.33 tolerated(0.7) possibly_damaging(0.474) TCGA-Q1-A73O-01 21 31744547 31744547 G C KRTAP13-2 5'UTR 0.27 TCGA-Q1-A73O-01 21 31988907 31988907 C G KRTAP20-1 Missense_Mutation p.S45C 0.15 unknown(0) TCGA-Q1-A73O-01 21 34892738 34892738 G A GART Silent p.L545L 0.25 TCGA-Q1-A73O-01 21 34949350 34949350 C G SON 3'UTR 0.36 TCGA-Q1-A73O-01 21 36163598 36163598 C G RUNX1 3'UTR 0.28 TCGA-Q1-A73O-01 21 37665940 37665940 G A DOPEY2 3'UTR 0.23 TCGA-Q1-A73O-01 21 38081692 38081692 C A SIM2 Intron 0.46 TCGA-Q1-A73O-01 21 38380494 38380494 G C RIPPLY3 Missense_Mutation p.D48H 0.26 deleterious(0.03) probably_damaging(0.984) TCGA-Q1-A73O-01 21 38525250 38525250 G C TTC3 Splice_Site p.X805_splice 0.18 TCGA-Q1-A73O-01 21 38878653 38878653 G A DYRK1A Intron 0.17 TCGA-Q1-A73O-01 21 40184981 40184981 C G ETS2 Missense_Mutation p.L43V 0.41 tolerated(0.2) benign(0.006) TCGA-Q1-A73O-01 21 40720242 40720242 C A HMGN1 Silent p.A34A 0.34 TCGA-Q1-A73O-01 21 43334762 43334762 C T C2CD2 Silent p.L263L 0.22 TCGA-Q1-A73O-01 21 43444361 43444361 C T ZNF295-AS1 RNA 0.21 TCGA-Q1-A73O-01 21 43444818 43444818 C T ZNF295-AS1 RNA 0.20 TCGA-Q1-A73O-01 21 43892899 43892899 G A RSPH1 3'UTR 0.29 TCGA-Q1-A73O-01 21 43912934 43912934 C G RSPH1 Missense_Mutation p.E70Q 0.23 tolerated(0.22) benign(0.246) TCGA-Q1-A73O-01 21 44450323 44450323 C T PKNOX1 3'UTR 0.30 TCGA-Q1-A73O-01 21 45094547 45094547 G A RRP1B Missense_Mutation p.E130K 0.23 deleterious(0) probably_damaging(0.993) TCGA-Q1-A73O-01 21 45094555 45094555 G A RRP1B Silent p.L132L 0.25 TCGA-Q1-A73O-01 21 45094945 45094945 G C RRP1B Missense_Mutation p.M150I 0.13 deleterious(0.03) benign(0.446) TCGA-Q1-A73O-01 21 45538667 45538667 C T PWP2 Missense_Mutation p.S335L 0.36 deleterious(0) benign(0.434) TCGA-Q1-A73O-01 21 47611816 47611816 G A LSS Silent p.L682L 0.33 TCGA-Q1-A73O-01 22 17672622 17672622 C T CECR1 Missense_Mutation p.E278K 0.22 tolerated(1) benign(0.002) TCGA-Q1-A73O-01 22 18027888 18027888 G C CECR2 Missense_Mutation p.E950Q 0.23 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-Q1-A73O-01 22 19906448 19906448 C T TXNRD2 Silent p.L103L 0.48 TCGA-Q1-A73O-01 22 20104027 20104027 C G TRMT2A Missense_Mutation p.E45Q 0.28 tolerated(0.31) benign(0.163) TCGA-Q1-A73O-01 22 20457737 20457737 G A RIMBP3 Missense_Mutation p.H1189Y 0.16 tolerated(0.42) benign(0.009) TCGA-Q1-A73O-01 22 20784796 20784796 G A SCARF2 Silent p.F374F 0.20 TCGA-Q1-A73O-01 22 21383294 21383294 C G SLC7A4 3'UTR 0.28 TCGA-Q1-A73O-01 22 22839381 22839381 G C ZNF280B 3'UTR 0.18 TCGA-Q1-A73O-01 22 23264986 23264986 G A IGLC7 Silent p.L74L 0.22 TCGA-Q1-A73O-01 22 23524281 23524281 C T BCR Silent p.F378F 0.24 TCGA-Q1-A73O-01 22 24647929 24647929 C T POM121L9P RNA 0.52 TCGA-Q1-A73O-01 22 25158460 25158460 C G PIWIL3 Missense_Mutation p.G3R 0.24 deleterious(0) unknown(0) TCGA-Q1-A73O-01 22 25586705 25586705 G C KIAA1671 Missense_Mutation p.L1793F 0.30 deleterious(0) probably_damaging(0.996) TCGA-Q1-A73O-01 22 26747131 26747131 G C SEZ6L Missense_Mutation p.E841Q 0.17 tolerated(0.15) benign(0.093) TCGA-Q1-A73O-01 22 26937206 26937206 C T TPST2 Missense_Mutation p.E131K 0.32 tolerated(0.15) benign(0.061) TCGA-Q1-A73O-01 22 29450677 29450677 C T ZNRF3 3'UTR 0.17 TCGA-Q1-A73O-01 22 29724828 29724828 C T AP1B1 Silent p.E944E 0.31 TCGA-Q1-A73O-01 22 30638753 30638753 C T LIF 3'UTR 0.31 TCGA-Q1-A73O-01 22 30638811 30638811 C T LIF 3'UTR 0.31 TCGA-Q1-A73O-01 22 30639457 30639457 C T LIF 3'UTR 0.31 TCGA-Q1-A73O-01 22 30736706 30736706 G C SF3A1 Silent p.V389V 0.14 TCGA-Q1-A73O-01 22 31089903 31089903 G C OSBP2 5'Flank 0.24 TCGA-Q1-A73O-01 22 31741129 31741129 C A PATZ1 Nonsense_Mutation p.E154* 0.23 TCGA-Q1-A73O-01 22 31816239 31816239 C T DRG1 Intron 0.28 TCGA-Q1-A73O-01 22 32843292 32843292 G A BPIFC Missense_Mutation p.S94L 0.13 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 22 33670327 33670327 C G LARGE 3'UTR 0.24 TCGA-Q1-A73O-01 22 36691727 36691727 G C MYH9 Silent p.L1103L 0.38 TCGA-Q1-A73O-01 22 36915544 36915544 C T EIF3D Missense_Mutation p.D207N 0.32 deleterious(0.01) possibly_damaging(0.661) TCGA-Q1-A73O-01 22 37171857 37171857 G C IFT27 5'UTR 0.10 TCGA-Q1-A73O-01 22 37260991 37260991 G C NCF4 Missense_Mutation p.G50R 0.24 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 22 37898696 37898696 G A CARD10 Missense_Mutation p.S567F 0.26 tolerated(0.2) possibly_damaging(0.851) TCGA-Q1-A73O-01 22 38355371 38355371 G A POLR2F Missense_Mutation p.E37K 0.23 tolerated(0.3) benign(0) TCGA-Q1-A73O-01 22 38512084 38512084 G A PLA2G6 Missense_Mutation p.S626L 0.25 deleterious(0.05) benign(0.155) TCGA-Q1-A73O-01 22 38512097 38512097 G C PLA2G6 Missense_Mutation p.P622A 0.26 tolerated(0.3) benign(0.04) TCGA-Q1-A73O-01 22 38875607 38875607 C G KDELR3 Missense_Mutation p.L68V 0.17 deleterious(0.02) benign(0.17) TCGA-Q1-A73O-01 22 38882271 38882271 C T DDX17 Missense_Mutation p.G622E 0.21 deleterious_low_confidence(0.01) benign(0.274) TCGA-Q1-A73O-01 22 38882311 38882311 C T DDX17 Missense_Mutation p.E609K 0.29 tolerated_low_confidence(0.65) benign(0.003) TCGA-Q1-A73O-01 22 38951397 38951397 C T DMC1 Missense_Mutation p.G115E 0.27 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 22 39479792 39479792 G C APOBEC3G Missense_Mutation p.R213T 0.18 tolerated(0.38) benign(0.075) TCGA-Q1-A73O-01 22 39621713 39621713 C G PDGFB 3'UTR 0.28 TCGA-Q1-A73O-01 22 39910250 39910250 C T MIEF1 Silent p.L438L 0.37 TCGA-Q1-A73O-01 22 39917510 39917510 C T ATF4 Silent p.F20F 0.21 TCGA-Q1-A73O-01 22 40727270 40727270 G A TNRC6B 3'UTR 0.25 TCGA-Q1-A73O-01 22 42174800 42174800 G A MEI1 Missense_Mutation p.M933I 0.36 tolerated(0.06) benign(0.033) TCGA-Q1-A73O-01 22 42205902 42205902 G A CCDC134 Silent p.V41V 0.23 TCGA-Q1-A73O-01 22 43627873 43627873 C T SCUBE1 Missense_Mutation p.E285K 0.57 deleterious(0.02) probably_damaging(0.989) TCGA-Q1-A73O-01 22 45128203 45128203 G C PRR5 Missense_Mutation p.E186Q 0.32 deleterious(0.02) probably_damaging(0.969) TCGA-Q1-A73O-01 22 46760101 46760101 C T CELSR1 Missense_Mutation p.E2943K 0.16 tolerated(0.06) benign(0.359) TCGA-Q1-A73O-01 22 47059759 47059759 C T GRAMD4 Silent p.L208L 0.24 TCGA-Q1-A73O-01 22 47074734 47074734 G T GRAMD4 3'UTR 0.21 TCGA-Q1-A73O-01 22 47074735 47074735 G A GRAMD4 3'UTR 0.21 TCGA-Q1-A73O-01 22 47074788 47074788 G C GRAMD4 3'UTR 0.18 TCGA-Q1-A73O-01 22 47075427 47075427 G A GRAMD4 3'UTR 0.28 TCGA-Q1-A73O-01 22 47075549 47075549 G A GRAMD4 3'UTR 0.29 TCGA-Q1-A73O-01 22 50655555 50655555 G A SELO Missense_Mutation p.E615K 0.24 tolerated(0.08) benign(0.189) TCGA-Q1-A73O-01 22 50845122 50845122 C G PPP6R2 Missense_Mutation p.P78A 0.30 deleterious(0.04) benign(0.401) TCGA-Q1-A73O-01 22 50986792 50986792 G A KLHDC7B Missense_Mutation p.R66K 0.25 tolerated_low_confidence(0.87) benign(0.01) TCGA-Q1-A73O-01 22 50986843 50986843 G C KLHDC7B Missense_Mutation p.R83T 0.26 tolerated_low_confidence(0.25) benign(0.002) TCGA-Q1-A73O-01 2 101967378 101967378 C T CREG2 3'UTR 0.31 TCGA-Q1-A73O-01 2 106690478 106690478 C T C2orf40 Silent p.L88L 0.20 TCGA-Q1-A73O-01 2 107041359 107041359 C T RGPD3 Missense_Mutation p.E1022K 0.26 deleterious(0.01) benign(0.129) TCGA-Q1-A73O-01 2 109276125 109276125 G A LIMS1 Missense_Mutation p.E83K 0.12 deleterious(0) possibly_damaging(0.832) TCGA-Q1-A73O-01 2 111144867 111144867 G A LINC01106 5'Flank 0.16 TCGA-Q1-A73O-01 2 111416087 111416087 C T BUB1 Missense_Mutation p.M472I 0.33 deleterious(0) probably_damaging(0.985) TCGA-Q1-A73O-01 2 11284095 11284095 C T C2orf50 Missense_Mutation p.S116L 0.18 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 2 112896127 112896127 G A FBLN7 5'UTR 0.35 TCGA-Q1-A73O-01 2 113535661 113535661 G A IL1A Missense_Mutation p.S173L 0.23 deleterious(0.04) possibly_damaging(0.817) TCGA-Q1-A73O-01 2 113875491 113875491 G C IL1RN 5'UTR 0.23 TCGA-Q1-A73O-01 2 118867466 118867466 G C INSIG2 3'UTR 0.22 TCGA-Q1-A73O-01 2 120021608 120021608 C G STEAP3 3'UTR 0.24 TCGA-Q1-A73O-01 2 120194804 120194804 C G TMEM37 Missense_Mutation p.Q121E 0.34 tolerated(0.06) benign(0.001) TCGA-Q1-A73O-01 2 125175029 125175029 G - CNTNAP5 Frame_Shift_Del p.G131Efs*3 0.25 TCGA-Q1-A73O-01 2 128481925 128481925 C T WDR33 Missense_Mutation p.G393D 0.15 deleterious(0) unknown(0) TCGA-Q1-A73O-01 2 128767909 128767909 G C SAP130 Nonsense_Mutation p.S294* 0.12 TCGA-Q1-A73O-01 2 130831648 130831648 G A POTEF 3'UTR 0.18 TCGA-Q1-A73O-01 2 130831650 130831650 C A POTEF 3'UTR 0.18 TCGA-Q1-A73O-01 2 131520159 131520159 G A AMER3 Missense_Mutation p.E172K 0.41 deleterious(0) probably_damaging(0.987) TCGA-Q1-A73O-01 2 131672828 131672828 C G ARHGEF4 5'Flank 0.40 TCGA-Q1-A73O-01 2 131803769 131803769 C G ARHGEF4 3'UTR 0.24 TCGA-Q1-A73O-01 2 131840217 131840217 C T FAM168B Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0.01) probably_damaging(0.922) TCGA-Q1-A73O-01 2 136071135 136071135 C T ZRANB3 Missense_Mutation p.R297K 0.16 tolerated(0.41) benign(0.02) TCGA-Q1-A73O-01 2 137748495 137748495 C G THSD7B Intron 0.44 TCGA-Q1-A73O-01 2 148705775 148705775 C G ORC4 Missense_Mutation p.E203Q 0.27 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 2 1497747 1497747 C G TPO Missense_Mutation p.R648G 0.17 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 2 149829850 149829850 G T KIF5C Missense_Mutation p.G373V 0.30 deleterious(0) probably_damaging(0.967) TCGA-Q1-A73O-01 2 149880752 149880752 G A KIF5C 3'UTR 0.22 TCGA-Q1-A73O-01 2 150071114 150071114 C G LYPD6B Missense_Mutation p.H172D 0.26 benign(0.407) TCGA-Q1-A73O-01 2 152107565 152107565 T G RBM43 Missense_Mutation p.K310T 0.29 deleterious(0.02) benign(0.191) TCGA-Q1-A73O-01 2 15427303 15427303 G C NBAS Missense_Mutation p.L1678V 0.26 tolerated(0.12) possibly_damaging(0.697) TCGA-Q1-A73O-01 2 15506789 15506789 G A NBAS Silent p.L1244L 0.29 TCGA-Q1-A73O-01 2 159517134 159517134 G C PKP4 Intron 0.18 TCGA-Q1-A73O-01 2 160287376 160287376 G C BAZ2B Missense_Mutation p.S731C 0.38 benign(0.005) TCGA-Q1-A73O-01 2 160624791 160624791 G A MARCH7 3'UTR 0.28 TCGA-Q1-A73O-01 2 162930520 162930520 C T DPP4 5'UTR 0.42 TCGA-Q1-A73O-01 2 1637936 1637936 G A PXDN 3'UTR 0.21 TCGA-Q1-A73O-01 2 165353988 165353988 C T GRB14 Missense_Mutation p.E373K 0.23 deleterious(0.02) possibly_damaging(0.775) TCGA-Q1-A73O-01 2 165755097 165755097 G A SLC38A11 Silent p.F357F 0.11 TCGA-Q1-A73O-01 2 166152517 166152517 C G SCN2A Missense_Mutation p.L62V 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-Q1-A73O-01 2 166188012 166188012 C G SCN2A Silent p.L774L 0.22 TCGA-Q1-A73O-01 2 167108373 167108373 G C SCN9A Nonsense_Mutation p.S1114* 0.19 TCGA-Q1-A73O-01 2 16742802 16742802 C G FAM49A Splice_Site p.X146_splice 0.36 TCGA-Q1-A73O-01 2 168096425 168096425 G A XIRP2 Missense_Mutation p.E307K 0.36 benign(0.105) TCGA-Q1-A73O-01 2 168726643 168726643 T A B3GALT1 3'UTR 0.23 TCGA-Q1-A73O-01 2 1687886 1687886 C G PXDN Missense_Mutation p.D152H 0.38 tolerated(0.05) benign(0.005) TCGA-Q1-A73O-01 2 169699594 169699594 G A NOSTRIN Silent p.L199L 0.31 TCGA-Q1-A73O-01 2 169826001 169826001 C T ABCB11 Missense_Mutation p.D624N 0.29 tolerated(0.06) benign(0.242) TCGA-Q1-A73O-01 2 170917915 170917915 C T UBR3 Nonsense_Mutation p.Q1661* 0.27 TCGA-Q1-A73O-01 2 173451093 173451093 G C PDK1 Missense_Mutation p.E345Q 0.19 tolerated(0.15) possibly_damaging(0.656) TCGA-Q1-A73O-01 2 175426026 175426026 C G WIPF1 3'UTR 0.28 TCGA-Q1-A73O-01 2 176965365 176965365 G A HOXD12 Silent p.Q230Q 0.20 TCGA-Q1-A73O-01 2 17941198 17941198 G A GEN1 Intron 0.27 TCGA-Q1-A73O-01 2 179417953 179417953 C T TTN Missense_Mutation p.D29892N 0.23 TCGA-Q1-A73O-01 2 179592389 179592389 G A TTN Missense_Mutation p.S6639F 0.23 TCGA-Q1-A73O-01 2 179612777 179612777 C G TTN Intron 0.43 TCGA-Q1-A73O-01 2 179641473 179641473 C T TTN Silent p.K1706K 0.11 TCGA-Q1-A73O-01 2 183070752 183070752 C G PDE1A Missense_Mutation p.E289Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 2 185803649 185803649 G A ZNF804A Missense_Mutation p.V1176I 0.35 deleterious(0.02) probably_damaging(0.939) TCGA-Q1-A73O-01 2 186655010 186655010 C T FSIP2 Silent p.I1138I 0.47 TCGA-Q1-A73O-01 2 186670251 186670251 C T FSIP2 Silent p.F5495F 0.27 TCGA-Q1-A73O-01 2 187465067 187465067 C T ITGAV Intron 0.26 TCGA-Q1-A73O-01 2 190306167 190306167 G C WDR75 5'UTR 0.16 TCGA-Q1-A73O-01 2 196642523 196642523 C G DNAH7 Splice_Site p.X3688_splice 0.23 TCGA-Q1-A73O-01 2 197744874 197744874 G A PGAP1 Silent p.L426L 0.28 TCGA-Q1-A73O-01 2 201284009 201284009 C G SPATS2L Missense_Mutation p.Q79E 0.26 tolerated(0.81) benign(0.312) TCGA-Q1-A73O-01 2 20205884 20205884 G C MATN3 Silent p.L137L 0.27 TCGA-Q1-A73O-01 2 203948108 203948108 C G NBEAL1 Missense_Mutation p.S284C 0.28 deleterious(0.03) benign(0.043) TCGA-Q1-A73O-01 2 205983657 205983657 C G PARD3B Silent p.L231L 0.24 TCGA-Q1-A73O-01 2 207173771 207173771 C G ZDBF2 Missense_Mutation p.Q1507E 0.22 tolerated(0.1) benign(0.042) TCGA-Q1-A73O-01 2 207173891 207173891 C G ZDBF2 Missense_Mutation p.Q1547E 0.35 tolerated(0.09) benign(0.042) TCGA-Q1-A73O-01 2 208628314 208628314 C G FZD5 3'UTR 0.23 TCGA-Q1-A73O-01 2 208633201 208633201 G A FZD5 Missense_Mutation p.S88F 0.29 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 2 210594923 210594923 G A MAP2 Silent p.L1762L 0.25 TCGA-Q1-A73O-01 2 210595278 210595278 G A MAP2 3'UTR 0.39 TCGA-Q1-A73O-01 2 210595626 210595626 G T MAP2 3'UTR 0.21 TCGA-Q1-A73O-01 2 21224421 21224421 C T APOB 3'UTR 0.24 TCGA-Q1-A73O-01 2 21230105 21230105 C G APOB Missense_Mutation p.R3212T 0.20 benign(0.037) TCGA-Q1-A73O-01 2 215818592 215818592 C G ABCA12 Silent p.L2211L 0.30 TCGA-Q1-A73O-01 2 218713588 218713588 G C TNS1 Missense_Mutation p.S426C 0.41 deleterious(0.04) benign(0.002) TCGA-Q1-A73O-01 2 218758228 218758228 G A TNS1 Silent p.S92S 0.16 TCGA-Q1-A73O-01 2 218768436 218768436 C T TNS1 Intron 0.41 TCGA-Q1-A73O-01 2 218768444 218768444 C T TNS1 Intron 0.33 TCGA-Q1-A73O-01 2 219093488 219093488 C T ARPC2 Missense_Mutation p.S46L 0.25 deleterious(0) possibly_damaging(0.748) TCGA-Q1-A73O-01 2 219362460 219362460 C G USP37 Missense_Mutation p.Q426H 0.20 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 2 219495403 219495403 G A PLCD4 Missense_Mutation p.E384K 0.22 deleterious(0.01) possibly_damaging(0.842) TCGA-Q1-A73O-01 2 220047220 220047220 G C FAM134A Missense_Mutation p.E501Q 0.54 deleterious(0.01) probably_damaging(0.99) TCGA-Q1-A73O-01 2 220192136 220192136 G A RESP18 3'UTR 0.26 TCGA-Q1-A73O-01 2 220406290 220406290 G A CHPF Intron 0.16 TCGA-Q1-A73O-01 2 220431664 220431664 C G OBSL1 Missense_Mutation p.Q674H 0.38 tolerated(0.54) benign(0.001) TCGA-Q1-A73O-01 2 222284720 222284720 G A EPHA4 3'UTR 0.23 TCGA-Q1-A73O-01 2 223918698 223918698 G C KCNE4 3'UTR 0.18 TCGA-Q1-A73O-01 2 227660829 227660829 C G IRS1 Missense_Mutation p.E876Q 0.26 deleterious(0) benign(0.113) TCGA-Q1-A73O-01 2 228134682 228134682 C G COL4A3 Missense_Mutation p.L521V 0.21 benign(0.376) TCGA-Q1-A73O-01 2 228172593 228172593 C G COL4A3 Missense_Mutation p.L1474V 0.16 unknown(0) TCGA-Q1-A73O-01 2 228497908 228497908 C G C2orf83 5'Flank 0.30 TCGA-Q1-A73O-01 2 228736381 228736381 C G DAW1 5'UTR 0.16 TCGA-Q1-A73O-01 2 230633395 230633395 C G TRIP12 Missense_Mutation p.D1907H 0.21 deleterious(0.01) probably_damaging(0.967) TCGA-Q1-A73O-01 2 230636303 230636303 C G TRIP12 Missense_Mutation p.D1839H 0.32 deleterious(0.02) possibly_damaging(0.726) TCGA-Q1-A73O-01 2 231309055 231309055 G C SP100 Missense_Mutation p.E145Q 0.23 tolerated(0.52) benign(0.005) TCGA-Q1-A73O-01 2 231775761 231775761 C G GPR55 5'UTR 0.18 TCGA-Q1-A73O-01 2 232321788 232321788 C G NCL Missense_Mutation p.E499Q 0.38 probably_damaging(0.951) TCGA-Q1-A73O-01 2 232329182 232329182 G A NCL 5'UTR 0.27 TCGA-Q1-A73O-01 2 234078039 234078039 G C INPP5D Missense_Mutation p.K536N 0.23 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 2 234475366 234475366 G A USP40 5'Flank 0.38 TCGA-Q1-A73O-01 2 234894477 234894477 C G TRPM8 Missense_Mutation p.I969M 0.29 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 2 238283622 238283622 C G COL6A3 Missense_Mutation p.E1038Q 0.24 probably_damaging(0.959) TCGA-Q1-A73O-01 2 238483057 238483057 C T RAB17 3'UTR 0.24 TCGA-Q1-A73O-01 2 240957862 240957862 C T NDUFA10 Intron 0.36 TCGA-Q1-A73O-01 2 240969076 240969076 G A OR6B2 Silent p.F257F 0.23 TCGA-Q1-A73O-01 2 241404942 241404942 G A GPC1 Missense_Mutation p.E441K 0.19 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 2 241570584 241570584 G A GPR35 3'UTR 0.29 TCGA-Q1-A73O-01 2 242167028 242167028 G A HDLBP 3'UTR 0.32 TCGA-Q1-A73O-01 2 242407698 242407698 G A FARP2 Silent p.L679L 0.19 TCGA-Q1-A73O-01 2 24260744 24260744 G A C2orf44 Missense_Mutation p.R541C 0.38 deleterious(0.01) benign(0) TCGA-Q1-A73O-01 2 25170315 25170315 C T DNAJC27 3'UTR 0.33 TCGA-Q1-A73O-01 2 25469588 25469588 C T DNMT3A Missense_Mutation p.D394N 0.29 tolerated(0.14) benign(0.332) TCGA-Q1-A73O-01 2 26178494 26178494 G A KIF3C Silent p.L562L 0.15 TCGA-Q1-A73O-01 2 26359228 26359228 C G RAB10 3'UTR 0.26 TCGA-Q1-A73O-01 2 26532840 26532840 G A GPR113 Missense_Mutation p.S1071L 0.45 tolerated_low_confidence(0.68) benign(0.001) TCGA-Q1-A73O-01 2 26532887 26532887 G A GPR113 Silent p.L1055L 0.27 TCGA-Q1-A73O-01 2 27424300 27424300 G C SLC5A6 Missense_Mutation p.F522L 0.30 tolerated(0.66) benign(0.001) TCGA-Q1-A73O-01 2 27430367 27430367 C T SLC5A6 Nonsense_Mutation p.W51* 0.15 TCGA-Q1-A73O-01 2 27607593 27607593 C G PPM1G Missense_Mutation p.E258Q 0.15 deleterious(0.02) benign(0.403) TCGA-Q1-A73O-01 2 27700992 27700992 C T IFT172 Missense_Mutation p.R346Q 0.18 tolerated(0.18) benign(0.091) TCGA-Q1-A73O-01 2 29225407 29225407 C G FAM179A Missense_Mutation p.L145V 0.16 deleterious(0.01) possibly_damaging(0.713) TCGA-Q1-A73O-01 2 29247043 29247043 C G FAM179A Missense_Mutation p.I552M 0.43 deleterious(0.03) probably_damaging(1) TCGA-Q1-A73O-01 2 31572578 31572578 C T XDH Silent p.R981R 0.21 TCGA-Q1-A73O-01 2 32855589 32855589 G A TTC27 Splice_Site p.X30_splice 0.19 TCGA-Q1-A73O-01 2 3623257 3623257 G C RPS7 Missense_Mutation p.E20Q 0.16 deleterious(0.01) possibly_damaging(0.753) TCGA-Q1-A73O-01 2 36970381 36970381 G A VIT Missense_Mutation p.C86Y 0.13 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 2 37152346 37152346 C G STRN Missense_Mutation p.Q80H 0.27 deleterious(0.01) possibly_damaging(0.686) TCGA-Q1-A73O-01 2 38893252 38893252 G A GALM 5'UTR 0.17 TCGA-Q1-A73O-01 2 42557571 42557571 G C EML4 3'UTR 0.16 TCGA-Q1-A73O-01 2 43452364 43452364 C G ZFP36L2 Missense_Mutation p.K193N 0.24 deleterious(0) probably_damaging(0.987) TCGA-Q1-A73O-01 2 44553900 44553900 C T PREPL Missense_Mutation p.G566E 0.18 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 2 46524939 46524939 C G EPAS1 5'UTR 0.24 TCGA-Q1-A73O-01 2 46574200 46574200 C T EPAS1 Missense_Mutation p.S72L 0.45 deleterious(0) benign(0.059) TCGA-Q1-A73O-01 2 47600944 47600944 C T EPCAM Intron 0.39 TCGA-Q1-A73O-01 2 48718244 48718244 C G PPP1R21 Missense_Mutation p.L512V 0.32 tolerated(0.48) benign(0.026) TCGA-Q1-A73O-01 2 50733678 50733678 C A NRXN1 Nonsense_Mutation p.G858* 0.34 TCGA-Q1-A73O-01 2 54028725 54028725 G A ERLEC1 Silent p.L239L 0.26 TCGA-Q1-A73O-01 2 54894740 54894740 G C SPTBN1 Splice_Site p.X2278_splice 0.14 TCGA-Q1-A73O-01 2 55077342 55077342 C G EML6 Missense_Mutation p.F477L 0.22 tolerated(0.07) benign(0.008) TCGA-Q1-A73O-01 2 55563907 55563907 C T CCDC88A Silent p.Q522Q 0.47 TCGA-Q1-A73O-01 2 60686804 60686804 G A BCL11A 3'UTR 0.29 TCGA-Q1-A73O-01 2 60695969 60695969 C G BCL11A Splice_Site p.X129_splice 0.19 TCGA-Q1-A73O-01 2 61390202 61390202 C T C2orf74 Silent p.V82V 0.12 TCGA-Q1-A73O-01 2 66664996 66664996 C G MEIS1 Missense_Mutation p.S47W 0.25 tolerated(0.12) possibly_damaging(0.473) TCGA-Q1-A73O-01 2 68882657 68882657 G A PROKR1 Silent p.K377K 0.18 TCGA-Q1-A73O-01 2 69746217 69746217 G C AAK1 Missense_Mutation p.Q456E 0.30 tolerated(0.17) unknown(0) TCGA-Q1-A73O-01 2 70189106 70189106 G C ASPRV1 5'UTR 0.20 TCGA-Q1-A73O-01 2 72727091 72727091 G A EXOC6B Missense_Mutation p.S393F 0.21 deleterious(0.01) benign(0.347) TCGA-Q1-A73O-01 2 73171779 73171779 C G SFXN5 3'UTR 0.23 TCGA-Q1-A73O-01 2 73828372 73828372 G A ALMS1 Missense_Mutation p.E3974K 0.28 probably_damaging(0.999) TCGA-Q1-A73O-01 2 74044096 74044096 G C C2orf78 Missense_Mutation p.E916Q 0.23 tolerated(0.73) benign(0.002) TCGA-Q1-A73O-01 2 74685760 74685760 G C WBP1 Missense_Mutation p.E11Q 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-Q1-A73O-01 2 74900842 74900842 G A SEMA4F Missense_Mutation p.E237K 0.29 tolerated(0.22) possibly_damaging(0.457) TCGA-Q1-A73O-01 2 75061666 75061666 C T HK2 5'UTR 0.33 TCGA-Q1-A73O-01 2 75108881 75108881 C A HK2 Missense_Mutation p.F538L 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-Q1-A73O-01 2 85069129 85069129 G A TRABD2A Intron 0.12 TCGA-Q1-A73O-01 2 85553825 85553825 C G TGOLN2 Missense_Mutation p.E344Q 0.21 deleterious(0.02) possibly_damaging(0.859) TCGA-Q1-A73O-01 2 86269049 86269049 C G POLR1A Missense_Mutation p.E1179Q 0.24 tolerated(0.29) benign(0.026) TCGA-Q1-A73O-01 2 86441962 86441962 G C REEP1 3'UTR 0.17 TCGA-Q1-A73O-01 2 87085223 87085223 C T CD8B Silent p.G120G 0.23 TCGA-Q1-A73O-01 2 9568944 9568944 G A CPSF3 Missense_Mutation p.G34E 0.28 deleterious(0.03) benign(0.339) TCGA-Q1-A73O-01 2 97779398 97779398 C T ANKRD36 5'UTR 0.32 TCGA-Q1-A73O-01 2 97851050 97851050 C T ANKRD36 Intron 0.22 TCGA-Q1-A73O-01 2 98351063 98351063 G A ZAP70 Missense_Mutation p.E324K 0.39 deleterious(0.03) probably_damaging(0.928) TCGA-Q1-A73O-01 2 98412696 98412696 C T TMEM131 Missense_Mutation p.R1062K 0.22 tolerated(1) benign(0) TCGA-Q1-A73O-01 2 98737818 98737818 C G VWA3B Missense_Mutation p.S200C 0.26 tolerated(0.07) benign(0.248) TCGA-Q1-A73O-01 2 98996712 98996712 C G CNGA3 Missense_Mutation p.S97C 0.14 deleterious(0) benign(0.043) TCGA-Q1-A73O-01 2 99410860 99410860 C G KIAA1211L 3'UTR 0.24 TCGA-Q1-A73O-01 3 100581727 100581727 C T ABI3BP Intron 0.19 TCGA-Q1-A73O-01 3 101023077 101023077 C T IMPG2 Missense_Mutation p.M138I 0.19 tolerated(0.06) benign(0.091) TCGA-Q1-A73O-01 3 101046647 101046647 C G SENP7 Missense_Mutation p.E960Q 0.28 deleterious(0) probably_damaging(0.988) TCGA-Q1-A73O-01 3 101483892 101483892 C T CEP97 Missense_Mutation p.P699S 0.09 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 3 10353745 10353745 C G SEC13 Silent p.L118L 0.16 TCGA-Q1-A73O-01 3 105459466 105459466 G C CBLB Missense_Mutation p.F285L 0.23 deleterious(0) probably_damaging(0.982) TCGA-Q1-A73O-01 3 108118027 108118027 C G MYH15 Missense_Mutation p.K1628N 0.18 deleterious(0) possibly_damaging(0.82) TCGA-Q1-A73O-01 3 108149726 108149726 C G MYH15 Missense_Mutation p.E1109Q 0.19 deleterious(0.04) probably_damaging(0.968) TCGA-Q1-A73O-01 3 110611266 110611266 G C RP11-553A10.1 Missense_Mutation p.S137C 0.25 deleterious(0.01) possibly_damaging(0.557) TCGA-Q1-A73O-01 3 111261048 111261048 G C CD96 5'UTR 0.20 TCGA-Q1-A73O-01 3 111603801 111603801 C T PHLDB2 Missense_Mutation p.H293Y 0.18 deleterious(0.05) benign(0.162) TCGA-Q1-A73O-01 3 111927180 111927180 C G SLC9C1 Missense_Mutation p.E611Q 0.18 deleterious(0) benign(0.032) TCGA-Q1-A73O-01 3 112260706 112260706 G A ATG3 Missense_Mutation p.S140L 0.26 tolerated(0.21) benign(0.003) TCGA-Q1-A73O-01 3 113775263 113775263 C G KIAA1407 Silent p.L17L 0.23 TCGA-Q1-A73O-01 3 113775317 113775317 C T KIAA1407 5'UTR 0.21 TCGA-Q1-A73O-01 3 114014651 114014651 C T TIGIT Silent p.F107F 0.29 TCGA-Q1-A73O-01 3 119150996 119150996 G A TMEM39A Silent p.F433F 0.11 TCGA-Q1-A73O-01 3 119396162 119396162 C G COX17 5'UTR 0.19 TCGA-Q1-A73O-01 3 119452308 119452308 G A MAATS1 Silent p.L433L 0.21 TCGA-Q1-A73O-01 3 121208843 121208843 C T POLQ Missense_Mutation p.E979K 0.09 deleterious(0.04) benign(0.007) TCGA-Q1-A73O-01 3 121417372 121417372 C G GOLGB1 Missense_Mutation p.L666F 0.20 benign(0.361) TCGA-Q1-A73O-01 3 121449758 121449758 C T GOLGB1 Missense_Mutation p.D21N 0.20 benign(0.012) TCGA-Q1-A73O-01 3 122134139 122134139 G C WDR5B Silent p.L79L 0.23 TCGA-Q1-A73O-01 3 122143540 122143540 C T KPNA1 3'UTR 0.22 TCGA-Q1-A73O-01 3 122459587 122459587 C T HSPBAP1 Missense_Mutation p.E358K 0.47 tolerated(0.68) benign(0.002) TCGA-Q1-A73O-01 3 122591347 122591347 C G DIRC2 Silent p.V408V 0.24 TCGA-Q1-A73O-01 3 123419273 123419273 C T MYLK Silent p.L1014L 0.26 TCGA-Q1-A73O-01 3 124802869 124802869 G A SLC12A8 Silent p.I670I 0.18 TCGA-Q1-A73O-01 3 125165838 125165838 G C SNX4 3'UTR 0.19 TCGA-Q1-A73O-01 3 125248862 125248862 C G OSBPL11 3'UTR 0.25 TCGA-Q1-A73O-01 3 125695785 125695785 C T ROPN1B Intron 0.16 TCGA-Q1-A73O-01 3 127703143 127703143 C T KBTBD12 3'UTR 0.30 TCGA-Q1-A73O-01 3 12776201 12776201 G T TMEM40 3'UTR 0.10 TCGA-Q1-A73O-01 3 127816255 127816255 C T RUVBL1 Missense_Mutation p.D302N 0.14 deleterious(0.01) possibly_damaging(0.843) TCGA-Q1-A73O-01 3 128615308 128615308 G A ACAD9 Silent p.Q161Q 0.22 TCGA-Q1-A73O-01 3 128751707 128751707 C G EFCC1 Missense_Mutation p.S394C 0.26 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 3 128971466 128971466 G A COPG1 Missense_Mutation p.G58R 0.26 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 3 128984496 128984496 C T COPG1 Silent p.I443I 0.29 TCGA-Q1-A73O-01 3 129274205 129274205 C T PLXND1 3'UTR 0.31 TCGA-Q1-A73O-01 3 129286613 129286613 C T PLXND1 Missense_Mutation p.E1301K 0.42 deleterious(0.02) probably_damaging(0.949) TCGA-Q1-A73O-01 3 129368486 129368486 C T TMCC1 3'UTR 0.12 TCGA-Q1-A73O-01 3 129389253 129389253 C T TMCC1 Silent p.E477E 0.18 TCGA-Q1-A73O-01 3 130463841 130463841 C G PIK3R4 Silent p.L74L 0.26 TCGA-Q1-A73O-01 3 132400622 132400622 C T NPHP3 3'UTR 0.42 TCGA-Q1-A73O-01 3 135822161 135822161 C G PPP2R3A Missense_Mutation p.F1055L 0.26 tolerated(0.24) probably_damaging(0.937) TCGA-Q1-A73O-01 3 136667769 136667769 G C NCK1 3'UTR 0.18 TCGA-Q1-A73O-01 3 1369193 1369193 C T CNTN6 Missense_Mutation p.S379L 0.32 tolerated(0.06) possibly_damaging(0.882) TCGA-Q1-A73O-01 3 137906440 137906440 C T ARMC8 Intron 0.28 TCGA-Q1-A73O-01 3 139280016 139280016 C G NMNAT3 Missense_Mutation p.E162Q 0.21 deleterious(0) possibly_damaging(0.874) TCGA-Q1-A73O-01 3 140281106 140281106 G C CLSTN2 Missense_Mutation p.R723P 0.24 deleterious(0.02) benign(0.23) TCGA-Q1-A73O-01 3 141289800 141289800 G A RASA2 Missense_Mutation p.D304N 0.16 tolerated(0.25) benign(0.326) TCGA-Q1-A73O-01 3 141289803 141289803 G A RASA2 Missense_Mutation p.D305N 0.18 tolerated(0.08) probably_damaging(0.969) TCGA-Q1-A73O-01 3 141290341 141290341 G A RASA2 Missense_Mutation p.D372N 0.16 tolerated(0.79) benign(0) TCGA-Q1-A73O-01 3 141291503 141291503 G A RASA2 Missense_Mutation p.E408K 0.18 deleterious(0) possibly_damaging(0.672) TCGA-Q1-A73O-01 3 14166665 14166665 G C TMEM43 5'UTR 0.18 TCGA-Q1-A73O-01 3 14172355 14172355 G A TMEM43 Missense_Mutation p.E66K 0.36 deleterious(0) possibly_damaging(0.831) TCGA-Q1-A73O-01 3 142025681 142025681 C G XRN1 3'UTR 0.14 TCGA-Q1-A73O-01 3 142074286 142074286 C T XRN1 Missense_Mutation p.G1242E 0.17 tolerated_low_confidence(0.25) benign(0.002) TCGA-Q1-A73O-01 3 142402845 142402845 C T PLS1 Intron 0.12 TCGA-Q1-A73O-01 3 14746084 14746084 C G C3orf20 Missense_Mutation p.F373L 0.29 tolerated(0.25) benign(0.002) TCGA-Q1-A73O-01 3 148596241 148596241 G T CPA3 Missense_Mutation p.D95Y 0.14 deleterious(0) probably_damaging(0.975) TCGA-Q1-A73O-01 3 148714544 148714544 G A GYG1 Missense_Mutation p.D112N 0.15 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 3 149458671 149458671 C G COMMD2 3'UTR 0.17 TCGA-Q1-A73O-01 3 150261187 150261187 C G SERP1 3'UTR 0.20 TCGA-Q1-A73O-01 3 150263566 150263566 C T SERP1 Splice_Site p.X29_splice 0.23 TCGA-Q1-A73O-01 3 151012884 151012884 G A GPR87 Silent p.L50L 0.08 TCGA-Q1-A73O-01 3 151154847 151154847 C G IGSF10 Missense_Mutation p.R2501T 0.17 tolerated(0.06) possibly_damaging(0.906) TCGA-Q1-A73O-01 3 151166624 151166624 C G IGSF10 Missense_Mutation p.S382T 0.10 deleterious(0) probably_damaging(0.929) TCGA-Q1-A73O-01 3 152881700 152881700 C G RAP2B 3'UTR 0.18 TCGA-Q1-A73O-01 3 15297502 15297502 G C SH3BP5 3'UTR 0.20 TCGA-Q1-A73O-01 3 155571875 155571875 G A SLC33A1 5'UTR 0.24 TCGA-Q1-A73O-01 3 15633153 15633153 G C HACL1 Missense_Mutation p.L88V 0.30 tolerated(0.44) benign(0.057) TCGA-Q1-A73O-01 3 157161164 157161164 C T PTX3 3'UTR 0.09 TCGA-Q1-A73O-01 3 158317955 158317955 G C MLF1 Missense_Mutation p.M218I 0.18 tolerated(0.05) possibly_damaging(0.823) TCGA-Q1-A73O-01 3 160154097 160154097 G A TRIM59 3'UTR 0.11 TCGA-Q1-A73O-01 3 161214769 161214769 C G OTOL1 Silent p.L58L 0.14 TCGA-Q1-A73O-01 3 164907799 164907799 C T SLITRK3 Missense_Mutation p.E274K 0.18 deleterious(0) possibly_damaging(0.888) TCGA-Q1-A73O-01 3 168819948 168819948 C T MECOM Missense_Mutation p.E768K 0.12 tolerated(0.36) benign(0.138) TCGA-Q1-A73O-01 3 168834457 168834457 G C MECOM Missense_Mutation p.C278W 0.20 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 3 169482441 169482441 G A ACTRT3 3'Flank 0.10 TCGA-Q1-A73O-01 3 169513223 169513223 G A LRRC34 Intron 0.15 TCGA-Q1-A73O-01 3 169513225 169513225 G A LRRC34 Intron 0.16 TCGA-Q1-A73O-01 3 169985710 169985710 C G PRKCI Missense_Mutation p.I124M 0.11 tolerated(0.13) probably_damaging(0.991) TCGA-Q1-A73O-01 3 170078591 170078591 C G SKIL Missense_Mutation p.Q158E 0.10 tolerated(0.15) benign(0.34) TCGA-Q1-A73O-01 3 170797367 170797367 C G TNIK Missense_Mutation p.E1130Q 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-Q1-A73O-01 3 172224398 172224398 G T TNFSF10 Missense_Mutation p.Q244K 0.20 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 3 174000425 174000425 C T NLGN1 3'UTR 0.15 TCGA-Q1-A73O-01 3 179533760 179533760 C T PEX5L Silent p.K324K 0.10 TCGA-Q1-A73O-01 3 182631777 182631777 C T ATP11B Silent p.I1149I 0.19 TCGA-Q1-A73O-01 3 182661299 182661299 G A DCUN1D1 3'UTR 0.24 TCGA-Q1-A73O-01 3 183401769 183401769 G C KLHL24 3'UTR 0.17 TCGA-Q1-A73O-01 3 183756706 183756706 C G HTR3D Silent p.L436L 0.19 TCGA-Q1-A73O-01 3 183815375 183815375 C T HTR3E 5'Flank 0.16 TCGA-Q1-A73O-01 3 183905482 183905482 G A ABCF3 Missense_Mutation p.E127K 0.24 deleterious(0) benign(0.187) TCGA-Q1-A73O-01 3 183977444 183977444 G A CAMK2N2 3'UTR 0.15 TCGA-Q1-A73O-01 3 184045425 184045425 C G EIF4G1 Missense_Mutation p.S1245C 0.22 deleterious(0) probably_damaging(0.921) TCGA-Q1-A73O-01 3 184053036 184053036 C T EIF4G1 3'UTR 0.17 TCGA-Q1-A73O-01 3 184063159 184063159 C G FAM131A 3'Flank 0.13 TCGA-Q1-A73O-01 3 184100681 184100681 C T CHRD Silent p.H340H 0.15 TCGA-Q1-A73O-01 3 184102886 184102886 G A CHRD Missense_Mutation p.D560N 0.09 deleterious(0.01) probably_damaging(1) TCGA-Q1-A73O-01 3 184107189 184107189 G C CHRD Missense_Mutation p.E949D 0.15 tolerated_low_confidence(0.13) benign(0.002) TCGA-Q1-A73O-01 3 184573498 184573498 G C VPS8 Splice_Site p.X346_splice 0.24 TCGA-Q1-A73O-01 3 184935936 184935936 G A EHHADH Nonsense_Mutation p.Q186* 0.16 TCGA-Q1-A73O-01 3 185635243 185635243 C T TRA2B 3'UTR 0.23 TCGA-Q1-A73O-01 3 185635494 185635494 C T TRA2B 3'UTR 0.17 TCGA-Q1-A73O-01 3 186502437 186502437 G C EIF4A2 Missense_Mutation p.E54Q 0.14 deleterious(0) probably_damaging(0.997) TCGA-Q1-A73O-01 3 186503748 186503748 G C EIF4A2 Missense_Mutation p.R142P 0.11 tolerated(0.12) possibly_damaging(0.668) TCGA-Q1-A73O-01 3 186947582 186947582 C T MASP1 3'Flank 0.10 TCGA-Q1-A73O-01 3 186954180 186954180 G C MASP1 Silent p.L493L 0.19 TCGA-Q1-A73O-01 3 187416340 187416340 G A RTP2 Silent p.L208L 0.24 TCGA-Q1-A73O-01 3 187896938 187896938 C T AC022498.1 5'UTR 0.11 TCGA-Q1-A73O-01 3 193855591 193855591 C G HES1 Missense_Mutation p.R138G 0.24 deleterious(0.02) possibly_damaging(0.733) TCGA-Q1-A73O-01 3 194380810 194380810 C T LSG1 Missense_Mutation p.E192K 0.16 tolerated(0.05) benign(0.044) TCGA-Q1-A73O-01 3 195295997 195295997 G A APOD Missense_Mutation p.S115L 0.19 tolerated(0.57) benign(0.026) TCGA-Q1-A73O-01 3 195456535 195456535 C T MUC20 Silent p.F662F 0.14 TCGA-Q1-A73O-01 3 195508585 195508585 G C MUC4 Nonsense_Mutation p.S3289* 0.20 TCGA-Q1-A73O-01 3 195514370 195514370 G C MUC4 Missense_Mutation p.L1361V 0.17 unknown(0) TCGA-Q1-A73O-01 3 195515603 195515603 G C MUC4 Missense_Mutation p.P950A 0.15 unknown(0) TCGA-Q1-A73O-01 3 197423822 197423822 C G KIAA0226 Intron 0.11 TCGA-Q1-A73O-01 3 197427948 197427948 G A KIAA0226 Missense_Mutation p.S266L 0.27 tolerated(0.21) benign(0.002) TCGA-Q1-A73O-01 3 197748331 197748331 C T LMLN Silent p.L497L 0.18 TCGA-Q1-A73O-01 3 20195668 20195668 C G KAT2B 3'UTR 0.27 TCGA-Q1-A73O-01 3 25542705 25542705 G C RARB Missense_Mutation p.M113I 0.18 deleterious(0) benign(0.026) TCGA-Q1-A73O-01 3 28454782 28454782 G A ZCWPW2 Missense_Mutation p.E75K 0.44 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 3 33059991 33059991 G C GLB1 Silent p.L432L 0.28 TCGA-Q1-A73O-01 3 37366456 37366456 G C GOLGA4 Missense_Mutation p.E1049Q 0.26 benign(0.247) TCGA-Q1-A73O-01 3 38103846 38103846 G C DLEC1 Missense_Mutation p.R287T 0.23 tolerated(0.17) benign(0.008) TCGA-Q1-A73O-01 3 38296542 38296542 G C OXSR1 3'UTR 0.20 TCGA-Q1-A73O-01 3 38354944 38354944 C G SLC22A14 Silent p.L377L 0.26 TCGA-Q1-A73O-01 3 39171766 39171766 G A TTC21A Missense_Mutation p.E753K 0.28 tolerated(0.17) benign(0.049) TCGA-Q1-A73O-01 3 42687947 42687947 G C NKTR 3'UTR 0.31 TCGA-Q1-A73O-01 3 42791312 42791312 C G CCDC13 Intron 0.27 TCGA-Q1-A73O-01 3 4403154 4403154 C T SUMF1 3'UTR 0.27 TCGA-Q1-A73O-01 3 46398967 46398967 G C CCR2 Splice_Site 0.27 TCGA-Q1-A73O-01 3 47277039 47277039 G A KIF9 Silent p.I762I 0.22 TCGA-Q1-A73O-01 3 47447426 47447426 C T PTPN23 Missense_Mutation p.H146Y 0.33 unknown(0) TCGA-Q1-A73O-01 3 47465422 47465422 C G SCAP Splice_Site p.X384_splice 0.32 TCGA-Q1-A73O-01 3 47887268 47887268 G A DHX30 Missense_Mutation p.E340K 0.18 deleterious(0.02) benign(0.118) TCGA-Q1-A73O-01 3 48488421 48488421 G A ATRIP Missense_Mutation p.D58N 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-Q1-A73O-01 3 48680447 48680447 G C CELSR3 Missense_Mutation p.L2787V 0.19 tolerated(0.05) probably_damaging(0.997) TCGA-Q1-A73O-01 3 49017054 49017054 C T ARIH2 Silent p.F367F 0.34 TCGA-Q1-A73O-01 3 49060662 49060662 C G NDUFAF3 3'UTR 0.21 TCGA-Q1-A73O-01 3 49061967 49061967 G A IMPDH2 Missense_Mutation p.S495F 0.25 tolerated(0.36) benign(0.192) TCGA-Q1-A73O-01 3 49147778 49147778 C T USP19 Missense_Mutation p.D1291N 0.20 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 3 49349008 49349008 G C USP4 Missense_Mutation p.L259V 0.27 tolerated(0.5) benign(0) TCGA-Q1-A73O-01 3 49396766 49396766 G A RHOA 3'UTR 0.18 TCGA-Q1-A73O-01 3 49396953 49396953 C T RHOA 3'UTR 0.21 TCGA-Q1-A73O-01 3 49397643 49397643 C T RHOA Silent p.%3D 0.23 TCGA-Q1-A73O-01 3 49397710 49397710 C G RHOA Missense_Mutation p.E172Q 0.23 tolerated(0.15) benign(0.378) TCGA-Q1-A73O-01 3 49689465 49689465 C A BSN Missense_Mutation p.L826I 0.25 unknown(0) TCGA-Q1-A73O-01 3 49848801 49848801 C A UBA7 Nonsense_Mutation p.E343* 0.19 TCGA-Q1-A73O-01 3 50326103 50326103 C G IFRD2 Missense_Mutation p.E419Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 3 50380767 50380767 C T ZMYND10 Missense_Mutation p.E161K 0.19 tolerated(0.44) benign(0.001) TCGA-Q1-A73O-01 3 51733506 51733506 G C TEX264 Missense_Mutation p.D189H 0.23 deleterious(0.02) possibly_damaging(0.838) TCGA-Q1-A73O-01 3 52280796 52280796 G A PPM1M 5'UTR 0.28 TCGA-Q1-A73O-01 3 52552829 52552829 G C STAB1 Missense_Mutation p.E1660Q 0.31 tolerated(0.4) benign(0.015) TCGA-Q1-A73O-01 3 52988418 52988418 G A SFMBT1 Missense_Mutation p.S13F 0.33 tolerated(0.05) possibly_damaging(0.792) TCGA-Q1-A73O-01 3 53133448 53133448 C A RFT1 Missense_Mutation p.G386V 0.24 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 3 53911703 53911703 G A ACTR8 Missense_Mutation p.H161Y 0.26 tolerated(0.44) benign(0.157) TCGA-Q1-A73O-01 3 56597937 56597937 G C CCDC66 Missense_Mutation p.E110Q 0.24 tolerated(0.1) benign(0.035) TCGA-Q1-A73O-01 3 56653391 56653391 G C CCDC66 Missense_Mutation p.R824T 0.28 deleterious(0.05) benign(0.026) TCGA-Q1-A73O-01 3 58109198 58109198 G A FLNB Missense_Mutation p.E1169K 0.20 tolerated(0.06) possibly_damaging(0.472) TCGA-Q1-A73O-01 3 58490952 58490952 C G ACOX2 Nonstop_Mutation p.*682Sext*29 0.20 TCGA-Q1-A73O-01 3 62358300 62358300 C G FEZF2 Missense_Mutation p.E82Q 0.50 deleterious(0) possibly_damaging(0.832) TCGA-Q1-A73O-01 3 63819876 63819876 C G THOC7 Splice_Site p.X183_splice 0.19 TCGA-Q1-A73O-01 3 67059093 67059093 G A KBTBD8 3'UTR 0.34 TCGA-Q1-A73O-01 3 68594366 68594366 C T FAM19A1 3'UTR 0.32 TCGA-Q1-A73O-01 3 69134134 69134134 C G ARL6IP5 5'UTR 0.19 TCGA-Q1-A73O-01 3 69153871 69153871 G A ARL6IP5 3'UTR 0.35 TCGA-Q1-A73O-01 3 71015120 71015120 C T FOXP1 Missense_Mutation p.E606K 0.19 tolerated(0.07) possibly_damaging(0.791) TCGA-Q1-A73O-01 3 75472072 75472072 G A FAM86DP RNA 0.28 TCGA-Q1-A73O-01 3 78663894 78663894 C G ROBO1 Missense_Mutation p.D1447H 0.32 deleterious(0) probably_damaging(0.996) TCGA-Q1-A73O-01 3 79067762 79067762 C G ROBO1 Intron 0.40 TCGA-Q1-A73O-01 3 93692607 93692607 G A PROS1 5'UTR 0.37 TCGA-Q1-A73O-01 3 9543896 9543896 C T LHFPL4 Silent p.%3D 0.17 TCGA-Q1-A73O-01 3 9743521 9743521 C T MTMR14 Missense_Mutation p.S606L 0.25 tolerated(0.16) benign(0.058) TCGA-Q1-A73O-01 3 97731259 97731259 G A GABRR3 RNA 0.23 TCGA-Q1-A73O-01 3 9800959 9800959 C G OGG1 Intron 0.33 TCGA-Q1-A73O-01 3 9803370 9803370 C G CAMK1 Missense_Mutation p.K167N 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-Q1-A73O-01 3 98515218 98515218 C G DCBLD2 3'UTR 0.21 TCGA-Q1-A73O-01 4 103226232 103226232 C G SLC39A8 Missense_Mutation p.E197Q 0.21 tolerated(0.22) possibly_damaging(0.864) TCGA-Q1-A73O-01 4 106158243 106158243 C G TET2 Silent p.L1048L 0.26 TCGA-Q1-A73O-01 4 106164850 106164850 C T TET2 Silent p.L1240L 0.38 TCGA-Q1-A73O-01 4 109841754 109841754 G C COL25A1 Missense_Mutation p.L239V 0.30 tolerated(0.6) unknown(0) TCGA-Q1-A73O-01 4 110651002 110651002 G A PLA2G12A 5'UTR 0.56 TCGA-Q1-A73O-01 4 110667465 110667465 G A CFI Missense_Mutation p.R448C 0.37 tolerated(0.08) benign(0.308) TCGA-Q1-A73O-01 4 114284583 114284583 C T ANK2 Silent p.L3616L 0.27 TCGA-Q1-A73O-01 4 115589440 115589440 G T UGT8 Silent p.V414V 0.20 TCGA-Q1-A73O-01 4 120981099 120981099 C T MAD2L1 3'UTR 0.44 TCGA-Q1-A73O-01 4 129878270 129878270 C G SCLT1 Missense_Mutation p.E353Q 0.14 tolerated(0.23) benign(0.077) TCGA-Q1-A73O-01 4 13370171 13370171 G A RAB28 3'UTR 0.16 TCGA-Q1-A73O-01 4 141542217 141542217 G C TBC1D9 3'UTR 0.18 TCGA-Q1-A73O-01 4 145567511 145567511 C G HHIP 5'UTR 0.46 TCGA-Q1-A73O-01 4 146686829 146686829 C G ZNF827 Silent p.L974L 0.27 TCGA-Q1-A73O-01 4 148653506 148653506 C G ARHGAP10 Missense_Mutation p.F18L 0.28 deleterious(0.03) possibly_damaging(0.899) TCGA-Q1-A73O-01 4 152065075 152065075 C G SH3D19 Missense_Mutation p.R480T 0.23 tolerated(0.4) benign(0.01) TCGA-Q1-A73O-01 4 153244184 153244184 C T FBXW7 Missense_Mutation p.R658Q 0.40 tolerated(0.15) probably_damaging(0.993) TCGA-Q1-A73O-01 4 153258986 153258986 G C FBXW7 Missense_Mutation p.Q277E 0.41 deleterious(0.01) possibly_damaging(0.871) TCGA-Q1-A73O-01 4 155157160 155157160 G C DCHS2 Missense_Mutation p.Q2427E 0.29 deleterious(0.02) possibly_damaging(0.488) TCGA-Q1-A73O-01 4 155305547 155305547 C G DCHS2 Missense_Mutation p.E69D 0.34 tolerated(0.2) benign(0.049) TCGA-Q1-A73O-01 4 155410577 155410577 G A DCHS2 Missense_Mutation p.S644F 0.38 deleterious(0) benign(0.33) TCGA-Q1-A73O-01 4 155531224 155531224 C T FGG Missense_Mutation p.G176E 0.22 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 4 15581639 15581639 C G CC2D2A Missense_Mutation p.Q1274E 0.28 tolerated(0.8) benign(0.001) TCGA-Q1-A73O-01 4 156632145 156632145 G A GUCY1A3 Silent p.V276V 0.26 TCGA-Q1-A73O-01 4 156723364 156723364 G C GUCY1B3 Intron 0.29 TCGA-Q1-A73O-01 4 15688706 15688706 G A FAM200B Missense_Mutation p.E36K 0.26 tolerated(0.09) benign(0) TCGA-Q1-A73O-01 4 15713435 15713435 G A BST1 Missense_Mutation p.D153N 0.23 tolerated(0.58) possibly_damaging(0.783) TCGA-Q1-A73O-01 4 16193035 16193035 C G TAPT1 Silent p.L187L 0.31 TCGA-Q1-A73O-01 4 16590405 16590405 C G LDB2 Missense_Mutation p.M153I 0.25 deleterious(0.03) probably_damaging(0.968) TCGA-Q1-A73O-01 4 175252799 175252799 C T CEP44 3'UTR 0.26 TCGA-Q1-A73O-01 4 17608478 17608478 C T LAP3 Silent p.V429V 0.21 TCGA-Q1-A73O-01 4 177114112 177114112 C G SPATA4 Missense_Mutation p.R155P 0.21 deleterious(0) probably_damaging(0.964) TCGA-Q1-A73O-01 4 184606283 184606283 C T TRAPPC11 Silent p.L538L 0.21 TCGA-Q1-A73O-01 4 186064507 186064507 G A SLC25A4 5'UTR 0.17 TCGA-Q1-A73O-01 4 186085307 186085307 C T KIAA1430 Silent p.V449V 0.28 TCGA-Q1-A73O-01 4 1950315 1950315 C T WHSC1 Intron 0.36 TCGA-Q1-A73O-01 4 25806331 25806331 C G SEL1L3 Missense_Mutation p.K536N 0.31 tolerated(0.46) benign(0.001) TCGA-Q1-A73O-01 4 3244996 3244996 G A HTT 3'UTR 0.25 TCGA-Q1-A73O-01 4 37446158 37446158 C G KIAA1239 Missense_Mutation p.L850V 0.23 deleterious(0.01) possibly_damaging(0.682) TCGA-Q1-A73O-01 4 37592364 37592364 G C C4orf19 Missense_Mutation p.L229F 0.38 deleterious(0.02) probably_damaging(0.92) TCGA-Q1-A73O-01 4 38139622 38139622 G C TBC1D1 3'UTR 0.21 TCGA-Q1-A73O-01 4 39088213 39088213 G A KLHL5 Missense_Mutation p.D373N 0.15 deleterious(0.01) probably_damaging(0.94) TCGA-Q1-A73O-01 4 39313115 39313115 G A RFC1 Missense_Mutation p.R480W 0.30 deleterious(0) probably_damaging(0.938) TCGA-Q1-A73O-01 4 39435943 39435943 G C KLB Silent p.T313T 0.27 TCGA-Q1-A73O-01 4 40133514 40133514 C T N4BP2 Silent p.L1541L 0.14 TCGA-Q1-A73O-01 4 41983833 41983833 C T DCAF4L1 Silent p.L8L 0.24 TCGA-Q1-A73O-01 4 4411304 4411304 C G NSG1 Missense_Mutation p.S84C 0.31 deleterious(0.02) possibly_damaging(0.65) TCGA-Q1-A73O-01 4 46053559 46053559 G A GABRG1 Missense_Mutation p.S338F 0.26 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 4 54439888 54439888 G A LNX1 Silent p.V94V 0.18 TCGA-Q1-A73O-01 4 56858218 56858218 C T CEP135 Missense_Mutation p.S659L 0.34 tolerated(1) benign(0.108) TCGA-Q1-A73O-01 4 57829628 57829628 C G NOA1 Missense_Mutation p.K695N 0.18 tolerated_low_confidence(0.06) benign(0.001) TCGA-Q1-A73O-01 4 57888400 57888400 G A POLR2B Missense_Mutation p.E835K 0.36 tolerated(0.43) benign(0.155) TCGA-Q1-A73O-01 4 657609 657609 C A PDE6B Silent p.I657I 0.35 TCGA-Q1-A73O-01 4 6858947 6858947 G C KIAA0232 Missense_Mutation p.Q142H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-Q1-A73O-01 4 69519921 69519921 C G UGT2B15 Missense_Mutation p.E383Q 0.19 deleterious(0) probably_damaging(0.983) TCGA-Q1-A73O-01 4 73013316 73013316 C G NPFFR2 Silent p.L452L 0.25 TCGA-Q1-A73O-01 4 74282065 74282065 G A ALB Silent p.Q428Q 0.14 TCGA-Q1-A73O-01 4 74441939 74441939 G C RASSF6 3'UTR 0.29 TCGA-Q1-A73O-01 4 76793176 76793176 G A PPEF2 Splice_Site p.X550_splice 0.12 TCGA-Q1-A73O-01 4 78663337 78663337 C G CNOT6L Missense_Mutation p.R277T 0.31 deleterious(0) possibly_damaging(0.845) TCGA-Q1-A73O-01 4 8307744 8307744 C T HTRA3 Missense_Mutation p.P415S 0.38 tolerated(0.23) benign(0.122) TCGA-Q1-A73O-01 4 83827655 83827655 G C THAP9 Missense_Mutation p.R152T 0.25 deleterious(0.02) benign(0.01) TCGA-Q1-A73O-01 4 83827726 83827726 G A THAP9 Missense_Mutation p.E176K 0.16 tolerated(0.11) benign(0.051) TCGA-Q1-A73O-01 4 84465744 84465744 C G AGPAT9 Missense_Mutation p.S66C 0.24 deleterious(0.03) benign(0.365) TCGA-Q1-A73O-01 4 88048811 88048811 C T AFF1 Missense_Mutation p.H974Y 0.24 tolerated(0.86) unknown(0) TCGA-Q1-A73O-01 4 88116574 88116574 C G KLHL8 Missense_Mutation p.D40H 0.18 tolerated(0.06) benign(0.132) TCGA-Q1-A73O-01 4 88235080 88235080 C T HSD17B13 Missense_Mutation p.R197K 0.31 tolerated(0.56) benign(0.009) TCGA-Q1-A73O-01 4 88403667 88403667 C T SPARCL1 Missense_Mutation p.R526Q 0.16 deleterious(0.01) probably_damaging(1) TCGA-Q1-A73O-01 4 88534379 88534379 C G DSPP Silent p.L347L 0.29 TCGA-Q1-A73O-01 4 88577634 88577634 C G DMP1 5'UTR 0.26 TCGA-Q1-A73O-01 4 89647545 89647545 G A FAM13A 3'UTR 0.21 TCGA-Q1-A73O-01 4 951903 951903 C G TMEM175 Silent p.V378V 0.28 TCGA-Q1-A73O-01 4 95444881 95444881 G C PDLIM5 Missense_Mutation p.D35H 0.23 deleterious(0.04) probably_damaging(0.95) TCGA-Q1-A73O-01 4 95444938 95444938 G C PDLIM5 Missense_Mutation p.D54H 0.20 deleterious(0) possibly_damaging(0.593) TCGA-Q1-A73O-01 5 102309832 102309832 C T PAM Missense_Mutation p.S392L 0.36 tolerated(0.07) probably_damaging(0.974) TCGA-Q1-A73O-01 5 102515860 102515860 C T PPIP5K2 Missense_Mutation p.P965S 0.30 tolerated_low_confidence(0.89) benign(0.007) TCGA-Q1-A73O-01 5 10261015 10261015 G A CCT5 Missense_Mutation p.E329K 0.26 deleterious(0) probably_damaging(0.917) TCGA-Q1-A73O-01 5 108521904 108521904 G C FER Missense_Mutation p.R736T 0.31 tolerated(0.07) probably_damaging(0.999) TCGA-Q1-A73O-01 5 10972955 10972955 C G CTNND2 3'UTR 0.30 TCGA-Q1-A73O-01 5 111091608 111091608 G A NREP Intron 0.17 TCGA-Q1-A73O-01 5 112136975 112136975 G A APC Splice_Site p.X244_splice 0.24 TCGA-Q1-A73O-01 5 115814368 115814368 G C SEMA6A Missense_Mutation p.Q433E 0.19 deleterious(0.01) benign(0.001) TCGA-Q1-A73O-01 5 118584139 118584139 G C DMXL1 3'UTR 0.36 TCGA-Q1-A73O-01 5 132200003 132200003 C T GDF9 Missense_Mutation p.G75R 0.30 tolerated(0.45) benign(0.072) TCGA-Q1-A73O-01 5 133532713 133532713 C G PPP2CA 3'UTR 0.30 TCGA-Q1-A73O-01 5 134363580 134363580 C T PITX1 3'UTR 0.54 TCGA-Q1-A73O-01 5 134363591 134363591 C T PITX1 3'UTR 0.54 TCGA-Q1-A73O-01 5 134363600 134363600 C G PITX1 3'UTR 0.54 TCGA-Q1-A73O-01 5 137275881 137275881 G A FAM13B 3'UTR 0.34 TCGA-Q1-A73O-01 5 137278833 137278833 C T FAM13B Missense_Mutation p.E783K 0.31 tolerated(0.91) probably_damaging(0.995) TCGA-Q1-A73O-01 5 137372052 137372052 C T FAM13B 5'Flank 0.30 TCGA-Q1-A73O-01 5 137513280 137513280 C A BRD8 Missense_Mutation p.M32I 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-Q1-A73O-01 5 137534364 137534364 G C CDC23 Silent p.L254L 0.41 TCGA-Q1-A73O-01 5 13771068 13771068 G A DNAH5 Missense_Mutation p.S3132F 0.21 possibly_damaging(0.788) TCGA-Q1-A73O-01 5 13922308 13922308 G A DNAH5 Nonsense_Mutation p.Q190* 0.33 TCGA-Q1-A73O-01 5 139495483 139495483 G C PURA 3'UTR 0.30 TCGA-Q1-A73O-01 5 139496200 139496200 G A PURA 3'UTR 0.15 TCGA-Q1-A73O-01 5 140180798 140180798 C T PCDHA3 Nonsense_Mutation p.R6* 0.15 TCGA-Q1-A73O-01 5 140229588 140229588 C T PCDHA9 Missense_Mutation p.S503L 0.40 tolerated_low_confidence(0.22) benign(0.001) TCGA-Q1-A73O-01 5 140262422 140262422 C G PCDHA13 Missense_Mutation p.S190C 0.22 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-Q1-A73O-01 5 140262469 140262469 C T PCDHA13 Nonsense_Mutation p.Q206* 0.28 TCGA-Q1-A73O-01 5 140309197 140309197 C G PCDHAC1 Intron 0.30 TCGA-Q1-A73O-01 5 140554795 140554795 C T PCDHB7 Silent p.F793F 0.33 TCGA-Q1-A73O-01 5 140589356 140589356 G C PCDHB12 Missense_Mutation p.E293Q 0.18 tolerated_low_confidence(0.49) benign(0.016) TCGA-Q1-A73O-01 5 140626409 140626409 C T PCDHB15 Silent p.I421I 0.23 TCGA-Q1-A73O-01 5 140719441 140719441 G A PCDHGA2 Silent p.L301L 0.27 TCGA-Q1-A73O-01 5 140750772 140750772 G A PCDHGB3 Missense_Mutation p.E271K 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-Q1-A73O-01 5 141018420 141018420 G A RELL2 Silent p.Q81Q 0.26 TCGA-Q1-A73O-01 5 141243154 141243154 C G PCDH1 Missense_Mutation p.K914N 0.29 deleterious(0.02) probably_damaging(0.933) TCGA-Q1-A73O-01 5 141243226 141243226 C T PCDH1 Silent p.K890K 0.23 TCGA-Q1-A73O-01 5 141336211 141336211 C T PCDH12 Silent p.L402L 0.24 TCGA-Q1-A73O-01 5 145379738 145379738 G A SH3RF2 Missense_Mutation p.E166K 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-Q1-A73O-01 5 145442380 145442380 C T SH3RF2 Intron 0.29 TCGA-Q1-A73O-01 5 145509623 145509623 G C LARS Missense_Mutation p.F862L 0.30 deleterious(0.03) benign(0.001) TCGA-Q1-A73O-01 5 145613045 145613045 C T RBM27 Nonsense_Mutation p.Q295* 0.20 TCGA-Q1-A73O-01 5 145651202 145651202 G A RBM27 Missense_Mutation p.E985K 0.21 deleterious(0.04) possibly_damaging(0.725) TCGA-Q1-A73O-01 5 147281297 147281297 G T C5orf46 Nonsense_Mutation p.S37* 0.27 TCGA-Q1-A73O-01 5 148638693 148638693 G A ABLIM3 3'UTR 0.33 TCGA-Q1-A73O-01 5 149206428 149206428 G A PPARGC1B Missense_Mutation p.E149K 0.33 deleterious(0) benign(0.424) TCGA-Q1-A73O-01 5 149380468 149380468 C T TIGD6 5'UTR 0.17 TCGA-Q1-A73O-01 5 149420366 149420366 C T HMGXB3 Silent p.I823I 0.23 TCGA-Q1-A73O-01 5 149504303 149504303 G C PDGFRB Silent p.V633V 0.36 TCGA-Q1-A73O-01 5 149627368 149627368 G C CAMK2A Missense_Mutation p.L304V 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-Q1-A73O-01 5 149755772 149755772 C T TCOF1 Missense_Mutation p.S674F 0.21 deleterious(0.01) probably_damaging(0.943) TCGA-Q1-A73O-01 5 150277651 150277651 C G ZNF300 Missense_Mutation p.D96H 0.36 tolerated(0.27) benign(0.428) TCGA-Q1-A73O-01 5 150277675 150277675 C T ZNF300 Missense_Mutation p.D88N 0.41 deleterious(0.03) benign(0.004) TCGA-Q1-A73O-01 5 150714911 150714911 G A SLC36A2 Silent p.I241I 0.25 TCGA-Q1-A73O-01 5 150884312 150884312 G A FAT2 3'UTR 0.35 TCGA-Q1-A73O-01 5 150932740 150932740 G C FAT2 Nonsense_Mutation p.S1385* 0.35 TCGA-Q1-A73O-01 5 150942963 150942963 G C FAT2 Missense_Mutation p.S1166C 0.31 benign(0.033) TCGA-Q1-A73O-01 5 154179226 154179226 C T LARP1 Missense_Mutation p.L408F 0.24 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 5 154190876 154190876 C G LARP1 Missense_Mutation p.F894L 0.20 deleterious(0) probably_damaging(0.994) TCGA-Q1-A73O-01 5 154395762 154395762 C T KIF4B Silent p.L781L 0.32 TCGA-Q1-A73O-01 5 156589949 156589949 T - FAM71B Frame_Shift_Del p.S443Vfs*46 0.11 TCGA-Q1-A73O-01 5 160717933 160717933 C T GABRB2 3'UTR 0.34 TCGA-Q1-A73O-01 5 160718080 160718080 G C GABRB2 3'UTR 0.22 TCGA-Q1-A73O-01 5 170827185 170827185 G A NPM1 Missense_Mutation p.E185K 0.34 tolerated(0.12) benign(0.344) TCGA-Q1-A73O-01 5 172518062 172518062 G C CREBRF Missense_Mutation p.E294Q 0.23 tolerated_low_confidence(0.11) benign(0.11) TCGA-Q1-A73O-01 5 172518290 172518290 G A CREBRF Missense_Mutation p.D370N 0.12 deleterious(0.04) benign(0.313) TCGA-Q1-A73O-01 5 174870004 174870004 G C DRD1 Silent p.L33L 0.28 TCGA-Q1-A73O-01 5 175763857 175763857 C T SIMC1 Missense_Mutation p.S335F 0.36 tolerated(0.1) possibly_damaging(0.862) TCGA-Q1-A73O-01 5 175998219 175998219 G C CDHR2 Missense_Mutation p.Q107H 0.29 tolerated(0.29) possibly_damaging(0.615) TCGA-Q1-A73O-01 5 176730095 176730095 G A RAB24 Intron 0.25 TCGA-Q1-A73O-01 5 178506224 178506224 G C ZNF354C Missense_Mutation p.R264T 0.32 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 5 179668150 179668150 G C MAPK9 Missense_Mutation p.Q293E 0.41 tolerated(0.22) benign(0.264) TCGA-Q1-A73O-01 5 180625192 180625192 C G TRIM7 Missense_Mutation p.E339Q 0.29 tolerated(0.12) possibly_damaging(0.467) TCGA-Q1-A73O-01 5 24487404 24487404 C A CDH10 3'UTR 0.24 TCGA-Q1-A73O-01 5 32074402 32074402 G T PDZD2 Nonsense_Mutation p.E1064* 0.22 TCGA-Q1-A73O-01 5 32387714 32387714 C G ZFR Missense_Mutation p.E814Q 0.36 tolerated(0.48) unknown(0) TCGA-Q1-A73O-01 5 34004690 34004690 C T AMACR Missense_Mutation p.D181N 0.19 deleterious(0.02) possibly_damaging(0.749) TCGA-Q1-A73O-01 5 34004818 34004818 C T AMACR Missense_Mutation p.R138K 0.30 deleterious(0.05) benign(0.093) TCGA-Q1-A73O-01 5 36249521 36249521 G C RANBP3L 3'UTR 0.30 TCGA-Q1-A73O-01 5 37183126 37183126 G C C5orf42 Missense_Mutation p.F1719L 0.25 deleterious(0.01) benign(0.228) TCGA-Q1-A73O-01 5 37196095 37196095 G A C5orf42 Nonsense_Mutation p.R1226* 0.15 TCGA-Q1-A73O-01 5 40730373 40730373 C T TTC33 Missense_Mutation p.M98I 0.21 tolerated(0.06) benign(0.02) TCGA-Q1-A73O-01 5 40843632 40843632 C T CARD6 Missense_Mutation p.P221L 0.22 tolerated(0.25) benign(0.01) TCGA-Q1-A73O-01 5 43174963 43174963 G C ZNF131 Missense_Mutation p.E500Q 0.33 tolerated(0.52) benign(0.018) TCGA-Q1-A73O-01 5 43246078 43246078 G A NIM1K Silent p.L67L 0.28 TCGA-Q1-A73O-01 5 465238 465238 G A EXOC3 Missense_Mutation p.E597K 0.36 tolerated(0.32) benign(0.239) TCGA-Q1-A73O-01 5 52243212 52243212 G A ITGA1 Missense_Mutation p.R1139K 0.27 tolerated(0.71) benign(0.003) TCGA-Q1-A73O-01 5 5464745 5464745 C T KIAA0947 Silent p.L1766L 0.26 TCGA-Q1-A73O-01 5 54654485 54654485 G C SKIV2L2 Missense_Mutation p.D540H 0.35 deleterious(0) probably_damaging(0.997) TCGA-Q1-A73O-01 5 55265471 55265471 C G IL6ST Missense_Mutation p.D93H 0.20 tolerated(0.12) benign(0.04) TCGA-Q1-A73O-01 5 56177814 56177814 G A MAP3K1 Silent p.E929E 0.22 TCGA-Q1-A73O-01 5 56778051 56778051 G C ACTBL2 Missense_Mutation p.H162D 0.21 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-Q1-A73O-01 5 61643892 61643892 C G KIF2A Missense_Mutation p.I59M 0.18 deleterious(0) possibly_damaging(0.681) TCGA-Q1-A73O-01 5 61668359 61668359 T G KIF2A Missense_Mutation p.F581V 0.21 tolerated(0.52) benign(0.059) TCGA-Q1-A73O-01 5 6374449 6374449 G A MED10 Silent p.I99I 0.35 TCGA-Q1-A73O-01 5 64023951 64023951 C G SREK1IP1 Missense_Mutation p.L87F 0.24 tolerated_low_confidence(0.15) unknown(0) TCGA-Q1-A73O-01 5 64023998 64023998 C T SREK1IP1 Missense_Mutation p.E72K 0.23 deleterious(0.02) unknown(0) TCGA-Q1-A73O-01 5 65084259 65084259 G A NLN Missense_Mutation p.D425N 0.19 deleterious(0) possibly_damaging(0.901) TCGA-Q1-A73O-01 5 66426168 66426168 G A MAST4 Missense_Mutation p.E626K 0.28 probably_damaging(0.967) TCGA-Q1-A73O-01 5 67589255 67589255 C T PIK3R1 Nonsense_Mutation p.Q415* 0.24 TCGA-Q1-A73O-01 5 67589631 67589631 G C PIK3R1 Missense_Mutation p.R465T 0.21 tolerated(0.23) benign(0.276) TCGA-Q1-A73O-01 5 67591079 67591079 G C PIK3R1 Missense_Mutation p.E558Q 0.36 deleterious(0.02) possibly_damaging(0.637) TCGA-Q1-A73O-01 5 67591128 67591128 G T PIK3R1 Missense_Mutation p.R574I 0.29 deleterious(0.01) probably_damaging(0.923) TCGA-Q1-A73O-01 5 68578623 68578623 G C CCDC125 Missense_Mutation p.S490C 0.21 tolerated(0.19) possibly_damaging(0.54) TCGA-Q1-A73O-01 5 68581257 68581257 C G CCDC125 Missense_Mutation p.Q379H 0.30 deleterious(0) probably_damaging(0.977) TCGA-Q1-A73O-01 5 70841015 70841015 G T BDP1 Missense_Mutation p.G2238V 0.22 deleterious(0) probably_damaging(0.993) TCGA-Q1-A73O-01 5 72207449 72207449 G A TNPO1 3'UTR 0.21 TCGA-Q1-A73O-01 5 72384584 72384584 C T FCHO2 3'UTR 0.32 TCGA-Q1-A73O-01 5 72801062 72801062 G A BTF3 Silent p.%3D 0.21 TCGA-Q1-A73O-01 5 73142140 73142140 C G ARHGEF28 Missense_Mutation p.S492C 0.24 deleterious(0.02) possibly_damaging(0.77) TCGA-Q1-A73O-01 5 74877066 74877066 G T POLK Nonsense_Mutation p.E243* 0.27 TCGA-Q1-A73O-01 5 76114956 76114956 G A F2RL1 5'UTR 0.53 TCGA-Q1-A73O-01 5 76708933 76708933 C T PDE8B Intron 0.26 TCGA-Q1-A73O-01 5 79027767 79027767 C T CMYA5 Missense_Mutation p.S1060L 0.47 probably_damaging(0.95) TCGA-Q1-A73O-01 5 80559431 80559431 C T CKMT2 Missense_Mutation p.S379L 0.20 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 5 86682699 86682699 C T RASA1 Silent p.I968I 0.14 TCGA-Q1-A73O-01 5 89985822 89985822 G A GPR98 Missense_Mutation p.G2212E 0.35 probably_damaging(0.972) TCGA-Q1-A73O-01 5 90101239 90101239 G A GPR98 Missense_Mutation p.E4934K 0.20 possibly_damaging(0.636) TCGA-Q1-A73O-01 5 95158313 95158313 G A GLRX Silent p.F18F 0.18 TCGA-Q1-A73O-01 5 96139368 96139368 G A ERAP1 Nonsense_Mutation p.Q88* 0.21 TCGA-Q1-A73O-01 6 100403984 100403984 C T MCHR2 Missense_Mutation p.E14K 0.33 tolerated(0.73) benign(0.003) TCGA-Q1-A73O-01 6 101315861 101315861 G C ASCC3 Missense_Mutation p.R5G 0.22 deleterious(0) probably_damaging(0.979) TCGA-Q1-A73O-01 6 106727617 106727617 C T ATG5 Missense_Mutation p.D133N 0.31 deleterious(0.03) possibly_damaging(0.889) TCGA-Q1-A73O-01 6 107811730 107811730 C T SOBP 5'UTR 0.38 TCGA-Q1-A73O-01 6 10887232 10887232 G T SYCP2L 5'UTR 0.24 TCGA-Q1-A73O-01 6 109003455 109003455 G C FOXO3 3'UTR 0.21 TCGA-Q1-A73O-01 6 109765274 109765274 G C MICAL1 3'UTR 0.30 TCGA-Q1-A73O-01 6 109931583 109931583 C T AK9 Silent p.Q609Q 0.14 TCGA-Q1-A73O-01 6 111288815 111288815 C T GTF3C6 Missense_Mutation p.S155L 0.26 tolerated(0.24) benign(0.002) TCGA-Q1-A73O-01 6 111288847 111288847 G A GTF3C6 Missense_Mutation p.E166K 0.34 tolerated(0.31) benign(0.027) TCGA-Q1-A73O-01 6 111912597 111912597 G C TRAF3IP2 Silent p.L231L 0.33 TCGA-Q1-A73O-01 6 112389478 112389478 C A WISP3 Silent p.S238S 0.19 TCGA-Q1-A73O-01 6 123376999 123376999 C A CLVS2 Missense_Mutation p.P242T 0.44 tolerated(0.08) benign(0.243) TCGA-Q1-A73O-01 6 125144548 125144548 G A NKAIN2 3'UTR 0.31 TCGA-Q1-A73O-01 6 125144578 125144578 C T NKAIN2 3'UTR 0.32 TCGA-Q1-A73O-01 6 128411102 128411102 C G PTPRK Missense_Mutation p.E400Q 0.43 deleterious(0.02) benign(0.138) TCGA-Q1-A73O-01 6 129704375 129704375 G A LAMA2 Missense_Mutation p.E1690K 0.19 tolerated(0.63) benign(0.163) TCGA-Q1-A73O-01 6 130389552 130389552 G C L3MBTL3 Missense_Mutation p.E360Q 0.21 tolerated(0.42) probably_damaging(0.984) TCGA-Q1-A73O-01 6 131919835 131919835 C T MED23 Missense_Mutation p.E763K 0.50 deleterious(0) probably_damaging(0.995) TCGA-Q1-A73O-01 6 133072503 133072503 G C VNN2 Missense_Mutation p.I327M 0.28 deleterious(0.05) benign(0.098) TCGA-Q1-A73O-01 6 13361105 13361105 C G GFOD1 3'UTR 0.28 TCGA-Q1-A73O-01 6 134349908 134349908 G C SLC2A12 Missense_Mutation p.S352C 0.08 tolerated(0.1) probably_damaging(0.992) TCGA-Q1-A73O-01 6 136597209 136597209 G C BCLAF1 Missense_Mutation p.S485C 0.11 deleterious(0.02) possibly_damaging(0.843) TCGA-Q1-A73O-01 6 136599535 136599535 G C BCLAF1 Missense_Mutation p.Q162E 0.14 tolerated_low_confidence(0.09) benign(0.092) TCGA-Q1-A73O-01 6 136932511 136932511 C G MAP3K5 Missense_Mutation p.L810F 0.25 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 6 137026245 137026245 C G MAP3K5 Intron 0.17 TCGA-Q1-A73O-01 6 137026254 137026254 C G MAP3K5 Missense_Mutation p.K202N 0.14 deleterious(0) benign(0.028) TCGA-Q1-A73O-01 6 148761536 148761536 G C SASH1 Missense_Mutation p.E127Q 0.38 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-Q1-A73O-01 6 150001486 150001486 C A LATS1 Silent p.V706V 0.22 TCGA-Q1-A73O-01 6 150001559 150001559 C G LATS1 Missense_Mutation p.R682T 0.26 deleterious(0) possibly_damaging(0.764) TCGA-Q1-A73O-01 6 151121928 151121928 C G PLEKHG1 Missense_Mutation p.L235V 0.25 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 6 152462387 152462387 C G SYNE1 Missense_Mutation p.E8399D 0.11 benign(0.001) TCGA-Q1-A73O-01 6 152599288 152599288 C T SYNE1 Missense_Mutation p.R6170K 0.26 benign(0.005) TCGA-Q1-A73O-01 6 155129905 155129905 C G SCAF8 Nonsense_Mutation p.S400* 0.32 TCGA-Q1-A73O-01 6 155458520 155458520 G C TIAM2 Missense_Mutation p.M468I 0.42 tolerated(0.08) benign(0.013) TCGA-Q1-A73O-01 6 155561820 155561820 G C TIAM2 Missense_Mutation p.D1109H 0.18 deleterious(0) probably_damaging(0.965) TCGA-Q1-A73O-01 6 155596973 155596973 C T CLDN20 Silent p.I40I 0.21 TCGA-Q1-A73O-01 6 158532387 158532387 G A SERAC1 3'UTR 0.28 TCGA-Q1-A73O-01 6 159210339 159210339 C T EZR Missense_Mutation p.G26E 0.33 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 6 1611076 1611076 C G FOXC1 Silent p.L132L 0.29 TCGA-Q1-A73O-01 6 16301477 16301477 C T ATXN1 3'UTR 0.26 TCGA-Q1-A73O-01 6 166873007 166873007 G C RPS6KA2 Missense_Mutation p.F343L 0.14 deleterious(0.02) possibly_damaging(0.888) TCGA-Q1-A73O-01 6 167728877 167728877 C G UNC93A Missense_Mutation p.I437M 0.15 tolerated(0.12) benign(0.001) TCGA-Q1-A73O-01 6 170169741 170169741 C G ERMARD Missense_Mutation p.Q389E 0.13 deleterious(0.01) possibly_damaging(0.757) TCGA-Q1-A73O-01 6 170626789 170626789 G A FAM120B Missense_Mutation p.R104Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 6 170844466 170844466 C G PSMB1 Missense_Mutation p.E190Q 0.21 tolerated(0.28) benign(0.003) TCGA-Q1-A73O-01 6 18121697 18121697 C T NHLRC1 Missense_Mutation p.D381N 0.23 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 6 20649602 20649602 C T CDKAL1 Missense_Mutation p.S122L 0.21 tolerated(0.63) benign(0.034) TCGA-Q1-A73O-01 6 25551207 25551207 C T LRRC16A Nonsense_Mutation p.R800* 0.25 TCGA-Q1-A73O-01 6 26197496 26197496 T G HIST1H3D Intron 0.20 TCGA-Q1-A73O-01 6 2624249 2624249 C T C6orf195 5'UTR 0.18 TCGA-Q1-A73O-01 6 26250758 26250758 C T HIST1H3F Missense_Mutation p.A26T 0.34 tolerated_low_confidence(0.07) benign(0) TCGA-Q1-A73O-01 6 26271487 26271487 G A HIST1H3G Silent p.Y42Y 0.33 TCGA-Q1-A73O-01 6 26411346 26411346 G C BTN3A1 Missense_Mutation p.R325T 0.29 deleterious(0.02) benign(0.008) TCGA-Q1-A73O-01 6 26476406 26476406 G C BTN2A1 3'UTR 0.21 TCGA-Q1-A73O-01 6 26476492 26476492 G C BTN2A1 3'UTR 0.25 TCGA-Q1-A73O-01 6 27115271 27115271 G A HIST1H2AH Missense_Mutation p.E122K 0.25 tolerated_low_confidence(0.21) benign(0.014) TCGA-Q1-A73O-01 6 27420303 27420303 C G ZNF184 Missense_Mutation p.Q345H 0.31 tolerated(0.21) benign(0.233) TCGA-Q1-A73O-01 6 27778143 27778143 G A HIST1H3H Missense_Mutation p.E98K 0.16 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-Q1-A73O-01 6 27782446 27782446 G A HIST1H2AJ Nonsense_Mutation p.Q25* 0.17 TCGA-Q1-A73O-01 6 27805978 27805978 C A HIST1H2AK Missense_Mutation p.G47V 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-Q1-A73O-01 6 28402132 28402132 C A ZSCAN23 3'UTR 0.28 TCGA-Q1-A73O-01 6 29911302 29911302 G T HLA-A Nonsense_Mutation p.E201* 0.17 TCGA-Q1-A73O-01 6 30080457 30080457 C G TRIM31 Missense_Mutation p.Q42H 0.16 deleterious(0.01) probably_damaging(0.937) TCGA-Q1-A73O-01 6 30298555 30298555 C T TRIM39 Intron 0.30 TCGA-Q1-A73O-01 6 30568445 30568445 C G PPP1R10 3'UTR 0.19 TCGA-Q1-A73O-01 6 30568579 30568579 C G PPP1R10 3'UTR 0.31 TCGA-Q1-A73O-01 6 30573980 30573980 C G PPP1R10 Missense_Mutation p.K225N 0.31 deleterious(0) probably_damaging(0.994) TCGA-Q1-A73O-01 6 30593386 30593386 G C MRPS18B Missense_Mutation p.D197H 0.30 tolerated(0.05) benign(0.03) TCGA-Q1-A73O-01 6 30594728 30594728 G C ATAT1 5'UTR 0.36 TCGA-Q1-A73O-01 6 30618839 30618839 G C C6orf136 Missense_Mutation p.E362D 0.22 tolerated(0.09) benign(0.364) TCGA-Q1-A73O-01 6 3106006 3106006 G A RIPK1 Missense_Mutation p.E433K 0.17 tolerated(0.79) benign(0.021) TCGA-Q1-A73O-01 6 31323127 31323127 C A HLA-B Nonsense_Mutation p.E288* 0.21 TCGA-Q1-A73O-01 6 31323160 31323160 C A HLA-B Nonsense_Mutation p.E277* 0.20 TCGA-Q1-A73O-01 6 31541299 31541299 C G LTA Silent p.L149L 0.29 TCGA-Q1-A73O-01 6 31631984 31631984 C T GPANK1 Missense_Mutation p.R91K 0.39 tolerated(0.94) benign(0.023) TCGA-Q1-A73O-01 6 32117007 32117007 C T PRRT1 Missense_Mutation p.D305N 0.26 deleterious(0.01) benign(0.354) TCGA-Q1-A73O-01 6 32163526 32163526 G C NOTCH4 Silent p.L1900L 0.32 TCGA-Q1-A73O-01 6 32261210 32261210 C G C6orf10 Missense_Mutation p.E414Q 0.30 tolerated(0.15) benign(0.33) TCGA-Q1-A73O-01 6 32609161 32609161 G C HLA-DQA1 Missense_Mutation p.D53H 0.32 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 6 32814865 32814865 C T TAP1 Missense_Mutation p.D734N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-Q1-A73O-01 6 32818836 32818836 C T TAP1 Missense_Mutation p.R372Q 0.30 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 6 32818868 32818868 C T TAP1 Silent p.E361E 0.27 TCGA-Q1-A73O-01 6 32917053 32917053 G C HLA-DMA Nonsense_Mutation p.S259* 0.13 TCGA-Q1-A73O-01 6 33260080 33260080 G C RGL2 Missense_Mutation p.I711M 0.29 deleterious(0) probably_damaging(0.991) TCGA-Q1-A73O-01 6 33746118 33746118 C T LEMD2 Missense_Mutation p.V353M 0.26 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 6 35473852 35473852 C T TULP1 Silent p.L309L 0.28 TCGA-Q1-A73O-01 6 35801298 35801298 G A SRPK1 3'UTR 0.13 TCGA-Q1-A73O-01 6 36168129 36168129 G A BRPF3 Silent p.Q10Q 0.19 TCGA-Q1-A73O-01 6 36452532 36452532 G T KCTD20 Nonsense_Mutation p.E300* 0.24 TCGA-Q1-A73O-01 6 36949389 36949389 G C MTCH1 Silent p.L127L 0.14 TCGA-Q1-A73O-01 6 37414095 37414095 G A CMTR1 Missense_Mutation p.G105E 0.27 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 6 38548046 38548046 G C BTBD9 Missense_Mutation p.Q328E 0.23 tolerated(0.72) unknown(0) TCGA-Q1-A73O-01 6 38709540 38709540 C G DNAH8 Silent p.L173L 0.26 TCGA-Q1-A73O-01 6 38850715 38850715 C T DNAH8 Nonsense_Mutation p.Q2413* 0.22 TCGA-Q1-A73O-01 6 39843173 39843173 C T DAAM2 Silent p.L410L 0.15 TCGA-Q1-A73O-01 6 4058961 4058961 G A PRPF4B Splice_Site p.X912_splice 0.30 TCGA-Q1-A73O-01 6 41196699 41196699 C G TREML4 Missense_Mutation p.S104W 0.26 deleterious(0.04) probably_damaging(0.911) TCGA-Q1-A73O-01 6 41562607 41562607 G A FOXP4 Splice_Site p.X513_splice 0.43 TCGA-Q1-A73O-01 6 42235924 42235924 G C TRERF1 Missense_Mutation p.Q469E 0.21 deleterious_low_confidence(0.04) benign(0.042) TCGA-Q1-A73O-01 6 43255936 43255936 G A TTBK1 3'UTR 0.32 TCGA-Q1-A73O-01 6 43413544 43413544 C T ABCC10 Missense_Mutation p.H1080Y 0.28 tolerated(1) benign(0.121) TCGA-Q1-A73O-01 6 43588571 43588571 G C GTPBP2 3'UTR 0.27 TCGA-Q1-A73O-01 6 44197428 44197428 G C SLC29A1 Missense_Mutation p.E72Q 0.38 tolerated(0.31) benign(0.017) TCGA-Q1-A73O-01 6 44197920 44197920 G A SLC29A1 Intron 0.27 TCGA-Q1-A73O-01 6 44255450 44255450 G C TCTE1 Nonsense_Mutation p.S38* 0.15 TCGA-Q1-A73O-01 6 46988506 46988506 C G GPR110 Missense_Mutation p.R191T 0.20 tolerated(0.65) benign(0.01) TCGA-Q1-A73O-01 6 47594489 47594489 G C CD2AP 3'UTR 0.27 TCGA-Q1-A73O-01 6 49578773 49578773 G A RHAG Missense_Mutation p.A344V 0.25 tolerated(0.49) probably_damaging(0.96) TCGA-Q1-A73O-01 6 52269581 52269581 G A PAQR8 3'UTR 0.25 TCGA-Q1-A73O-01 6 52541933 52541933 C T TMEM14A Silent p.L11L 0.22 TCGA-Q1-A73O-01 6 52958272 52958272 G A FBXO9 Missense_Mutation p.R301K 0.30 deleterious(0) probably_damaging(0.997) TCGA-Q1-A73O-01 6 56469153 56469153 C G DST Intron 0.21 TCGA-Q1-A73O-01 6 56469891 56469891 C G DST Intron 0.33 TCGA-Q1-A73O-01 6 56469903 56469903 C T DST Intron 0.37 TCGA-Q1-A73O-01 6 56966866 56966866 C G ZNF451 Intron 0.26 TCGA-Q1-A73O-01 6 58276103 58276103 C T LINC00680 RNA 0.33 TCGA-Q1-A73O-01 6 64408465 64408465 G C PHF3 Missense_Mutation p.L984F 0.35 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 6 7229752 7229752 C T RREB1 Silent p.L474L 0.26 TCGA-Q1-A73O-01 6 74125280 74125280 G C DDX43 Missense_Mutation p.L602F 0.22 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 6 7580249 7580249 C G DSP Missense_Mutation p.Q1276E 0.29 probably_damaging(0.966) TCGA-Q1-A73O-01 6 75858079 75858079 G C COL12A1 Missense_Mutation p.Q1428E 0.18 benign(0.099) TCGA-Q1-A73O-01 6 83847173 83847173 C G DOPEY1 Missense_Mutation p.Q1138E 0.35 tolerated_low_confidence(0.6) benign(0) TCGA-Q1-A73O-01 6 87647446 87647446 C G HTR1E 5'UTR 0.28 TCGA-Q1-A73O-01 6 88218210 88218210 C T SLC35A1 Missense_Mutation p.S216L 0.26 tolerated(0.71) benign(0.055) TCGA-Q1-A73O-01 6 89790884 89790884 C T PNRC1 Missense_Mutation p.R91W 0.23 deleterious(0) probably_damaging(0.95) TCGA-Q1-A73O-01 6 90276740 90276740 C G ANKRD6 Silent p.L15L 0.25 TCGA-Q1-A73O-01 6 90422485 90422485 C A MDN1 Missense_Mutation p.E2413D 0.31 benign(0.022) TCGA-Q1-A73O-01 6 97590818 97590818 G A MMS22L 3'UTR 0.28 TCGA-Q1-A73O-01 7 100085778 100085778 C G NYAP1 Nonsense_Mutation p.S145* 0.38 TCGA-Q1-A73O-01 7 100204157 100204157 C T PCOLCE Nonsense_Mutation p.Q282* 0.24 TCGA-Q1-A73O-01 7 100278378 100278378 C G GIGYF1 3'UTR 0.47 TCGA-Q1-A73O-01 7 100675832 100675832 G A MUC17 Missense_Mutation p.E379K 0.28 possibly_damaging(0.899) TCGA-Q1-A73O-01 7 100686128 100686128 G C MUC17 Missense_Mutation p.E3811Q 0.15 benign(0.002) TCGA-Q1-A73O-01 7 100732942 100732942 G A TRIM56 3'UTR 0.35 TCGA-Q1-A73O-01 7 101754977 101754977 G A CUX1 Splice_Site p.X188_splice 0.18 TCGA-Q1-A73O-01 7 102389811 102389811 G A FAM185A Missense_Mutation p.E53K 0.53 tolerated(0.59) benign(0.003) TCGA-Q1-A73O-01 7 104653894 104653894 G C KMT2E 5'Flank 0.25 TCGA-Q1-A73O-01 7 104753436 104753436 C G KMT2E Missense_Mutation p.Q1745E 0.28 deleterious_low_confidence(0) benign(0.042) TCGA-Q1-A73O-01 7 107789329 107789329 G C NRCAM 3'UTR 0.20 TCGA-Q1-A73O-01 7 112723343 112723343 C G GPR85 3'UTR 0.22 TCGA-Q1-A73O-01 7 1132956 1132956 C G GPER1 3'UTR 0.23 TCGA-Q1-A73O-01 7 115581880 115581880 G A TFEC Intron 0.25 TCGA-Q1-A73O-01 7 116139970 116139970 C G CAV2 Silent p.L45L 0.19 TCGA-Q1-A73O-01 7 120388010 120388010 G A KCND2 3'UTR 0.21 TCGA-Q1-A73O-01 7 120388147 120388147 G C KCND2 3'UTR 0.23 TCGA-Q1-A73O-01 7 122114572 122114572 C T CADPS2 Splice_Site p.X621_splice 0.31 TCGA-Q1-A73O-01 7 127976060 127976060 G A RBM28 Missense_Mutation p.S217L 0.32 tolerated(0.67) benign(0.002) TCGA-Q1-A73O-01 7 130357681 130357681 G C TSGA13 Silent p.L141L 0.11 TCGA-Q1-A73O-01 7 131175160 131175160 C T MKLN1 3'UTR 0.14 TCGA-Q1-A73O-01 7 134552449 134552449 G C CALD1 5'UTR 0.19 TCGA-Q1-A73O-01 7 137293709 137293709 C T DGKI Intron 0.14 TCGA-Q1-A73O-01 7 139059158 139059158 C G C7orf55-LUC7L2 Intron 0.30 TCGA-Q1-A73O-01 7 13933923 13933923 G A ETV1 3'UTR 0.17 TCGA-Q1-A73O-01 7 13971147 13971147 C T ETV1 Missense_Mutation p.R261K 0.19 tolerated(0.19) probably_damaging(0.926) TCGA-Q1-A73O-01 7 141429462 141429462 C T WEE2 Missense_Mutation p.S556L 0.33 tolerated(0.71) benign(0.017) TCGA-Q1-A73O-01 7 142131860 142131860 G C TRBV5-6 Silent p.L6L 0.18 TCGA-Q1-A73O-01 7 142481236 142481236 C G PRSS3P2 RNA 0.48 TCGA-Q1-A73O-01 7 142606661 142606661 G A TRPV5 Silent p.F630F 0.23 TCGA-Q1-A73O-01 7 143051280 143051280 C G FAM131B 3'UTR 0.42 TCGA-Q1-A73O-01 7 144304033 144304033 G C TPK1 Intron 0.28 TCGA-Q1-A73O-01 7 146825844 146825844 C G CNTNAP2 Missense_Mutation p.F333L 0.29 deleterious(0.02) probably_damaging(0.941) TCGA-Q1-A73O-01 7 149516582 149516582 C T SSPO RNA 0.18 TCGA-Q1-A73O-01 7 150389519 150389519 G A GIMAP2 Missense_Mutation p.E49K 0.24 tolerated(0.15) benign(0.097) TCGA-Q1-A73O-01 7 150417411 150417411 C A GIMAP1 Missense_Mutation p.L107I 0.27 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 7 150709545 150709545 G A NOS3 Missense_Mutation p.D1031N 0.18 deleterious(0.03) benign(0.385) TCGA-Q1-A73O-01 7 150709588 150709588 G C ATG9B 3'UTR 0.21 TCGA-Q1-A73O-01 7 150747872 150747872 G A ASIC3 Missense_Mutation p.D281N 0.32 tolerated(0.34) benign(0.223) TCGA-Q1-A73O-01 7 150819902 150819902 C G AGAP3 Intron 0.26 TCGA-Q1-A73O-01 7 151877932 151877932 G A KMT2C Missense_Mutation p.S2338L 0.30 benign(0.04) TCGA-Q1-A73O-01 7 151902229 151902229 G C KMT2C Nonsense_Mutation p.S1308* 0.23 TCGA-Q1-A73O-01 7 155090103 155090103 G C INSIG1 Missense_Mutation p.E36D 0.18 tolerated_low_confidence(0.18) benign(0.002) TCGA-Q1-A73O-01 7 156755773 156755773 G C NOM1 Missense_Mutation p.Q605H 0.35 deleterious(0.03) benign(0.006) TCGA-Q1-A73O-01 7 156759087 156759087 G C NOM1 Missense_Mutation p.R719S 0.30 deleterious(0) probably_damaging(0.995) TCGA-Q1-A73O-01 7 158478876 158478876 C T NCAPG2 Silent p.G275G 0.30 TCGA-Q1-A73O-01 7 20420367 20420367 G C ITGB8 Missense_Mutation p.E238D 0.46 tolerated(0.51) benign(0.175) TCGA-Q1-A73O-01 7 21985467 21985467 G A CDCA7L 5'UTR 0.25 TCGA-Q1-A73O-01 7 23683859 23683859 C T CCDC126 3'UTR 0.47 TCGA-Q1-A73O-01 7 24910400 24910400 G A OSBPL3 Missense_Mutation p.S111L 0.17 deleterious(0) possibly_damaging(0.854) TCGA-Q1-A73O-01 7 27181234 27181234 C G HOXA5 3'UTR 0.22 TCGA-Q1-A73O-01 7 27221947 27221947 C T HOXA11 3'UTR 0.22 TCGA-Q1-A73O-01 7 2883556 2883556 G C GNA12 Missense_Mutation p.I80M 0.32 deleterious(0) probably_damaging(0.991) TCGA-Q1-A73O-01 7 33019179 33019179 G A FKBP9 Intron 0.37 TCGA-Q1-A73O-01 7 34889232 34889232 G A NPSR1 Intron 0.20 TCGA-Q1-A73O-01 7 44043653 44043653 G C SPDYE1 Intron 0.25 TCGA-Q1-A73O-01 7 44268519 44268519 G A CAMK2B Silent p.P448P 0.26 TCGA-Q1-A73O-01 7 44268537 44268537 G C CAMK2B Intron 0.25 TCGA-Q1-A73O-01 7 44578916 44578916 G A NPC1L1 Silent p.V360V 0.15 TCGA-Q1-A73O-01 7 44736529 44736529 G C OGDH Missense_Mutation p.L639F 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-Q1-A73O-01 7 46736610 46736610 C T AC011294.3 Translation_Start_Site p.M1? 0.24 benign(0.045) TCGA-Q1-A73O-01 7 47897295 47897295 G C PKD1L1 Missense_Mutation p.P1500A 0.30 tolerated(0.09) benign(0.017) TCGA-Q1-A73O-01 7 4820830 4820830 G A AP5Z1 Silent p.K22K 0.29 TCGA-Q1-A73O-01 7 4897424 4897424 C T PAPOLB 3'UTR 0.21 TCGA-Q1-A73O-01 7 50198672 50198672 C T C7orf72 Silent p.L408L 0.13 TCGA-Q1-A73O-01 7 50198675 50198675 C T C7orf72 Silent p.F409F 0.13 TCGA-Q1-A73O-01 7 53103781 53103781 C T POM121L12 Silent p.I139I 0.20 TCGA-Q1-A73O-01 7 5430072 5430072 C G TNRC18 Intron 0.17 TCGA-Q1-A73O-01 7 5566884 5566884 C T ACTB 3'UTR 0.22 TCGA-Q1-A73O-01 7 5567464 5567464 G C ACTB Missense_Mutation p.S348W 0.40 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-Q1-A73O-01 7 55863412 55863412 C T SEPT14 3'UTR 0.29 TCGA-Q1-A73O-01 7 6068307 6068307 C G EIF2AK1 Missense_Mutation p.R490T 0.20 deleterious(0.05) benign(0.158) TCGA-Q1-A73O-01 7 64388535 64388535 C G ZNF273 Missense_Mutation p.L277V 0.23 deleterious(0) benign(0.012) TCGA-Q1-A73O-01 7 65228309 65228309 C G SNORA15 3'Flank 0.13 TCGA-Q1-A73O-01 7 6731194 6731194 G A ZNF12 Missense_Mutation p.S460L 0.17 tolerated(0.33) probably_damaging(0.999) TCGA-Q1-A73O-01 7 70256392 70256392 C T AUTS2 3'UTR 0.24 TCGA-Q1-A73O-01 7 71252577 71252577 C T CALN1 3'UTR 0.26 TCGA-Q1-A73O-01 7 72658866 72658866 G T GTF2IRD2P1 RNA 0.15 TCGA-Q1-A73O-01 7 72721671 72721671 C T NSUN5 Silent p.A100A 0.25 TCGA-Q1-A73O-01 7 73119447 73119447 C G STX1A Intron 0.26 TCGA-Q1-A73O-01 7 74157852 74157852 G C GTF2I Missense_Mutation p.L581F 0.14 tolerated(0.44) benign(0.113) TCGA-Q1-A73O-01 7 74172300 74172300 G C GTF2I Missense_Mutation p.E969Q 0.13 deleterious(0.02) benign(0.002) TCGA-Q1-A73O-01 7 77256663 77256663 C G PTPN12 Nonsense_Mutation p.S556* 0.38 TCGA-Q1-A73O-01 7 83610767 83610767 C T SEMA3A Missense_Mutation p.G508R 0.20 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 7 87135251 87135251 C G ABCB1 Missense_Mutation p.D1200H 0.25 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 7 913305 913305 G A SUN1 3'UTR 0.19 TCGA-Q1-A73O-01 7 91502974 91502974 G A MTERF Silent p.I378I 0.34 TCGA-Q1-A73O-01 7 91793610 91793610 G C LRRD1 Missense_Mutation p.P303A 0.21 deleterious(0.01) possibly_damaging(0.742) TCGA-Q1-A73O-01 7 91794384 91794384 C T LRRD1 Missense_Mutation p.D45N 0.30 tolerated_low_confidence(0.21) benign(0.058) TCGA-Q1-A73O-01 7 933395 933395 C T GET4 Silent p.F255F 0.31 TCGA-Q1-A73O-01 7 94298361 94298361 G A PEG10 3'UTR 0.34 TCGA-Q1-A73O-01 7 98491433 98491433 G C TRRAP Missense_Mutation p.E127Q 0.32 benign(0.403) TCGA-Q1-A73O-01 7 98790706 98790706 C G KPNA7 Missense_Mutation p.R191T 0.29 deleterious(0.02) probably_damaging(1) TCGA-Q1-A73O-01 7 99097648 99097648 C T ZNF394 Silent p.A23A 0.31 TCGA-Q1-A73O-01 7 99436308 99436308 G A CYP3A43 Intron 0.40 TCGA-Q1-A73O-01 7 99764665 99764665 C G GAL3ST4 Silent p.L18L 0.23 TCGA-Q1-A73O-01 7 99799678 99799678 C G GATS 3'UTR 0.26 TCGA-Q1-A73O-01 8 100533164 100533164 G C VPS13B Missense_Mutation p.K1582N 0.32 deleterious(0) probably_damaging(0.95) TCGA-Q1-A73O-01 8 10285944 10285944 G A MSRA 3'UTR 0.25 TCGA-Q1-A73O-01 8 103838969 103838969 C G AZIN1 3'UTR 0.30 TCGA-Q1-A73O-01 8 103846971 103846971 G A AZIN1 Missense_Mutation p.H197Y 0.25 deleterious(0) probably_damaging(0.924) TCGA-Q1-A73O-01 8 107695447 107695447 G C OXR1 Missense_Mutation p.L109F 0.28 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 8 107695462 107695462 G A OXR1 Silent p.L114L 0.27 TCGA-Q1-A73O-01 8 110408272 110408272 C A PKHD1L1 Missense_Mutation p.F276L 0.41 tolerated(0.06) benign(0.048) TCGA-Q1-A73O-01 8 110456022 110456022 C G PKHD1L1 Nonsense_Mutation p.S1561* 0.25 TCGA-Q1-A73O-01 8 124381325 124381325 C T ATAD2 Missense_Mutation p.R341K 0.38 tolerated(0.13) benign(0.065) TCGA-Q1-A73O-01 8 124968231 124968231 G A FER1L6 Splice_Site 0.28 TCGA-Q1-A73O-01 8 126011624 126011624 C G SQLE 5'UTR 0.25 TCGA-Q1-A73O-01 8 126075818 126075818 C G KIAA0196 Missense_Mutation p.E452Q 0.28 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 8 12885806 12885806 C G KIAA1456 3'UTR 0.27 TCGA-Q1-A73O-01 8 142154344 142154344 G A DENND3 Missense_Mutation p.G161R 0.32 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 8 144650719 144650719 G A MROH6 Intron 0.41 TCGA-Q1-A73O-01 8 144917689 144917689 C G NRBP2 3'UTR 0.33 TCGA-Q1-A73O-01 8 144917741 144917741 G C NRBP2 3'UTR 0.23 TCGA-Q1-A73O-01 8 145009251 145009251 G A PLEC Silent p.I388I 0.23 TCGA-Q1-A73O-01 8 145057097 145057097 C T PARP10 Intron 0.41 TCGA-Q1-A73O-01 8 145152328 145152328 C G CYC1 3'UTR 0.23 TCGA-Q1-A73O-01 8 145158082 145158082 C T SHARPIN Missense_Mutation p.G83D 0.25 deleterious(0.02) benign(0.172) TCGA-Q1-A73O-01 8 145737344 145737344 C G RECQL4 Missense_Mutation p.E1115Q 0.25 tolerated(0.34) benign(0.014) TCGA-Q1-A73O-01 8 17843594 17843594 G C PCM1 Missense_Mutation p.D1470H 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-Q1-A73O-01 8 1952263 1952263 C T KBTBD11 3'UTR 0.43 TCGA-Q1-A73O-01 8 21856640 21856640 C G XPO7 Missense_Mutation p.Q823E 0.21 tolerated(0.12) benign(0.009) TCGA-Q1-A73O-01 8 22009023 22009023 G A LGI3 Nonsense_Mutation p.R270* 0.26 TCGA-Q1-A73O-01 8 22064467 22064467 C A BMP1 Silent p.S778S 0.27 TCGA-Q1-A73O-01 8 22081786 22081786 G A PHYHIP Silent p.F137F 0.29 TCGA-Q1-A73O-01 8 22852085 22852085 G A RHOBTB2 5'UTR 0.21 TCGA-Q1-A73O-01 8 23004583 23004583 G A TNFRSF10D Nonsense_Mutation p.Q125* 0.28 TCGA-Q1-A73O-01 8 23118393 23118393 C T CHMP7 3'UTR 0.22 TCGA-Q1-A73O-01 8 23159627 23159627 G C LOXL2 Silent p.T682T 0.28 TCGA-Q1-A73O-01 8 23560158 23560158 C G NKX2-6 Missense_Mutation p.V238L 0.21 deleterious(0.02) benign(0.015) TCGA-Q1-A73O-01 8 24212074 24212074 G C ADAM28 3'UTR 0.33 TCGA-Q1-A73O-01 8 24212115 24212115 G A ADAM28 3'UTR 0.26 TCGA-Q1-A73O-01 8 24776519 24776519 C G NEFM 3'UTR 0.21 TCGA-Q1-A73O-01 8 25317769 25317769 C G CDCA2 Nonsense_Mutation p.S5* 0.19 TCGA-Q1-A73O-01 8 26722241 26722241 G A ADRA1A Silent p.F82F 0.18 TCGA-Q1-A73O-01 8 2796226 2796226 C T CSMD1 Missense_Mutation p.E3526K 0.31 probably_damaging(0.996) TCGA-Q1-A73O-01 8 29023247 29023247 C G KIF13B Missense_Mutation p.E401Q 0.20 deleterious(0) probably_damaging(0.966) TCGA-Q1-A73O-01 8 30700917 30700917 C T TEX15 Missense_Mutation p.E1873K 0.27 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 8 30700956 30700956 C G TEX15 Missense_Mutation p.E1860Q 0.15 deleterious(0) probably_damaging(0.971) TCGA-Q1-A73O-01 8 30703646 30703646 C T TEX15 Missense_Mutation p.R963Q 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-Q1-A73O-01 8 36793338 36793338 C T KCNU1 Missense_Mutation p.S1117L 0.17 tolerated_low_confidence(0.09) benign(0.007) TCGA-Q1-A73O-01 8 38173490 38173490 C G WHSC1L1 Missense_Mutation p.M642I 0.21 tolerated(0.4) benign(0.024) TCGA-Q1-A73O-01 8 38174721 38174721 C T WHSC1L1 Intron 0.38 TCGA-Q1-A73O-01 8 39847293 39847293 C G IDO2 Silent p.L214L 0.25 TCGA-Q1-A73O-01 8 39862883 39862883 G A IDO2 Silent p.R248R 0.16 TCGA-Q1-A73O-01 8 42044933 42044933 C T PLAT Silent p.G174G 0.22 TCGA-Q1-A73O-01 8 42174305 42174305 G C IKBKB Missense_Mutation p.L336F 0.09 deleterious(0) possibly_damaging(0.526) TCGA-Q1-A73O-01 8 48614295 48614295 C G SPIDR Missense_Mutation p.L596V 0.25 tolerated(0.08) possibly_damaging(0.857) TCGA-Q1-A73O-01 8 48686800 48686800 C G PRKDC Silent p.L4106L 0.26 TCGA-Q1-A73O-01 8 48736444 48736444 G C PRKDC Missense_Mutation p.S2965C 0.18 benign(0.031) TCGA-Q1-A73O-01 8 53535356 53535356 C G RB1CC1 3'UTR 0.26 TCGA-Q1-A73O-01 8 55537806 55537806 G C RP1 Missense_Mutation p.R455T 0.41 deleterious(0) possibly_damaging(0.894) TCGA-Q1-A73O-01 8 55541492 55541492 G A RP1 Missense_Mutation p.E1684K 0.19 deleterious(0.03) benign(0.03) TCGA-Q1-A73O-01 8 57905782 57905782 G C IMPAD1 Silent p.L121L 0.19 TCGA-Q1-A73O-01 8 59496630 59496630 G C NSMAF 3'UTR 0.20 TCGA-Q1-A73O-01 8 62416044 62416044 G C ASPH Silent p.L717L 0.29 TCGA-Q1-A73O-01 8 64124494 64124494 C G YTHDF3 3'UTR 0.18 TCGA-Q1-A73O-01 8 67808472 67808472 G C MCMDC2 Missense_Mutation p.Q449H 0.31 tolerated(0.06) benign(0.008) TCGA-Q1-A73O-01 8 67926753 67926753 C T PPP1R42 Silent p.L68L 0.24 TCGA-Q1-A73O-01 8 71036975 71036975 G A NCOA2 Nonsense_Mutation p.Q1348* 0.28 TCGA-Q1-A73O-01 8 74235004 74235004 C G RDH10 Missense_Mutation p.I287M 0.17 deleterious(0.01) possibly_damaging(0.826) TCGA-Q1-A73O-01 8 75944458 75944458 G C CRISPLD1 Missense_Mutation p.R495T 0.25 deleterious(0.02) possibly_damaging(0.511) TCGA-Q1-A73O-01 8 77895827 77895827 G C PEX2 Silent p.L196L 0.12 TCGA-Q1-A73O-01 8 81903729 81903729 C T PAG1 Silent p.E54E 0.31 TCGA-Q1-A73O-01 8 82354850 82354850 G A PMP2 3'UTR 0.17 TCGA-Q1-A73O-01 8 82391026 82391026 C G FABP4 3'UTR 0.22 TCGA-Q1-A73O-01 8 85717004 85717004 G C RALYL Splice_Site p.X124_splice 0.16 TCGA-Q1-A73O-01 8 8643422 8643422 C G MFHAS1 3'UTR 0.23 TCGA-Q1-A73O-01 8 8643428 8643428 C T MFHAS1 3'UTR 0.22 TCGA-Q1-A73O-01 8 87498804 87498804 G C RMDN1 Nonsense_Mutation p.S135* 0.16 TCGA-Q1-A73O-01 8 91635712 91635712 G A TMEM64 3'UTR 0.28 TCGA-Q1-A73O-01 8 94936583 94936583 C G PDP1 3'UTR 0.25 TCGA-Q1-A73O-01 8 94937149 94937149 C T PDP1 3'UTR 0.24 TCGA-Q1-A73O-01 8 95893533 95893533 C T CCNE2 3'UTR 0.24 TCGA-Q1-A73O-01 9 100137857 100137857 G A CCDC180 Missense_Mutation p.D1654N 0.29 deleterious(0.03) possibly_damaging(0.728) TCGA-Q1-A73O-01 9 101235587 101235587 G A GABBR2 Silent p.I280I 0.37 TCGA-Q1-A73O-01 9 104238223 104238223 G A TMEM246 Silent p.L384L 0.17 TCGA-Q1-A73O-01 9 105766986 105766986 G A CYLC2 Missense_Mutation p.E64K 0.28 tolerated(0.22) possibly_damaging(0.899) TCGA-Q1-A73O-01 9 113312230 113312230 C G SVEP1 Missense_Mutation p.R229P 0.29 probably_damaging(1) TCGA-Q1-A73O-01 9 114325402 114325402 C TG PTGR1 Frame_Shift_Ins p.*330S 0.23 TCGA-Q1-A73O-01 9 116041407 116041407 G C PRPF4 Missense_Mutation p.E131Q 0.24 tolerated(0.06) possibly_damaging(0.819) TCGA-Q1-A73O-01 9 116048568 116048568 G A PRPF4 Missense_Mutation p.R270Q 0.26 tolerated(0.05) benign(0.149) TCGA-Q1-A73O-01 9 116116519 116116519 G A BSPRY Splice_Site p.X68_splice 0.15 TCGA-Q1-A73O-01 9 116858726 116858726 G C KIF12 Missense_Mutation p.L89V 0.23 deleterious(0.01) possibly_damaging(0.887) TCGA-Q1-A73O-01 9 123888122 123888122 G A CNTRL Missense_Mutation p.E645K 0.30 possibly_damaging(0.887) TCGA-Q1-A73O-01 9 123888128 123888128 G A CNTRL Missense_Mutation p.E647K 0.32 probably_damaging(0.999) TCGA-Q1-A73O-01 9 123888142 123888142 G A CNTRL Silent p.Q651Q 0.32 TCGA-Q1-A73O-01 9 124632838 124632838 G A TTLL11 Silent p.I647I 0.29 TCGA-Q1-A73O-01 9 125075632 125075632 C T MRRF Silent p.V226V 0.24 TCGA-Q1-A73O-01 9 128122832 128122832 C T GAPVD1 Missense_Mutation p.P1384L 0.33 tolerated(0.18) possibly_damaging(0.479) TCGA-Q1-A73O-01 9 129184194 129184194 G A MVB12B Missense_Mutation p.E242K 0.38 tolerated(0.26) possibly_damaging(0.559) TCGA-Q1-A73O-01 9 130652973 130652973 G A ST6GALNAC6 Missense_Mutation p.S216F 0.22 probably_damaging(0.987) TCGA-Q1-A73O-01 9 130653221 130653221 G A ST6GALNAC6 Silent p.I133I 0.33 TCGA-Q1-A73O-01 9 131345069 131345069 G C SPTAN1 Missense_Mutation p.D583H 0.21 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 9 131389689 131389689 G A SPTAN1 Missense_Mutation p.E2201K 0.26 deleterious(0) possibly_damaging(0.879) TCGA-Q1-A73O-01 9 13224396 13224396 G A MPDZ Nonsense_Mutation p.Q124* 0.17 TCGA-Q1-A73O-01 9 132565593 132565593 C T TOR1B Silent p.I34I 0.17 TCGA-Q1-A73O-01 9 133470931 133470931 C T FUBP3 Missense_Mutation p.S49L 0.36 tolerated(0.08) benign(0.104) TCGA-Q1-A73O-01 9 134348985 134348985 G C PRRC2B Missense_Mutation p.R733T 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-Q1-A73O-01 9 134349046 134349046 G C PRRC2B Missense_Mutation p.Q753H 0.16 tolerated(0.15) benign(0.009) TCGA-Q1-A73O-01 9 134349845 134349845 G C PRRC2B Missense_Mutation p.E777Q 0.32 deleterious(0.02) possibly_damaging(0.71) TCGA-Q1-A73O-01 9 134350562 134350562 G A PRRC2B Missense_Mutation p.E1016K 0.35 tolerated(0.29) benign(0.426) TCGA-Q1-A73O-01 9 135211731 135211731 G C SETX Missense_Mutation p.L224V 0.19 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 9 135266142 135266142 C A TTF1 Missense_Mutation p.K688N 0.27 deleterious(0) benign(0.304) TCGA-Q1-A73O-01 9 135985795 135985795 C G RALGDS Missense_Mutation p.E126Q 0.23 deleterious(0) probably_damaging(0.993) TCGA-Q1-A73O-01 9 136028893 136028893 C G GBGT1 3'UTR 0.22 TCGA-Q1-A73O-01 9 138754361 138754361 G C CAMSAP1 Missense_Mutation p.L254V 0.31 deleterious(0) probably_damaging(0.928) TCGA-Q1-A73O-01 9 138824837 138824837 G C UBAC1 3'UTR 0.26 TCGA-Q1-A73O-01 9 139092469 139092469 G A LHX3 Silent p.F75F 0.33 TCGA-Q1-A73O-01 9 139312472 139312472 G C PMPCA Missense_Mutation p.E301Q 0.21 tolerated(0.23) benign(0.062) TCGA-Q1-A73O-01 9 139371806 139371806 G A SEC16A Nonsense_Mutation p.Q88* 0.38 TCGA-Q1-A73O-01 9 139754394 139754394 C G MAMDC4 Missense_Mutation p.L1084V 0.26 deleterious(0.05) benign(0.352) TCGA-Q1-A73O-01 9 140175799 140175799 G A TOR4A 3'UTR 0.27 TCGA-Q1-A73O-01 9 140355119 140355119 G A PNPLA7 Silent p.F1304F 0.16 TCGA-Q1-A73O-01 9 15423037 15423037 C A SNAPC3 Missense_Mutation p.R54S 0.29 deleterious(0.04) benign(0.162) TCGA-Q1-A73O-01 9 15784558 15784558 G A CCDC171 Missense_Mutation p.A1045T 0.27 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73O-01 9 19060161 19060161 C G HAUS6 Missense_Mutation p.E564Q 0.29 deleterious(0.04) benign(0.187) TCGA-Q1-A73O-01 9 21384621 21384621 G A IFNA2 3'UTR 0.27 TCGA-Q1-A73O-01 9 2192851 2192851 G T SMARCA2 3'UTR 0.26 TCGA-Q1-A73O-01 9 22008871 22008871 C G CDKN2B Missense_Mutation p.E28Q 0.26 tolerated(0.41) benign(0.013) TCGA-Q1-A73O-01 9 32542367 32542367 G A TOPORS Missense_Mutation p.S719F 0.18 deleterious_low_confidence(0) unknown(0) TCGA-Q1-A73O-01 9 33886876 33886876 C G UBE2R2 Intron 0.21 TCGA-Q1-A73O-01 9 33921884 33921884 C G UBAP2 3'UTR 0.17 TCGA-Q1-A73O-01 9 33953364 33953364 G A UBAP2 Silent p.F325F 0.24 TCGA-Q1-A73O-01 9 37745883 37745883 C T FRMPD1 Missense_Mutation p.S1285F 0.20 tolerated(0.21) benign(0.223) TCGA-Q1-A73O-01 9 37746008 37746008 C G FRMPD1 Missense_Mutation p.P1327A 0.28 tolerated(0.06) benign(0.059) TCGA-Q1-A73O-01 9 37866102 37866102 G A DCAF10 3'Flank 0.30 TCGA-Q1-A73O-01 9 40773898 40773898 C G ZNF658 Silent p.L459L 0.28 TCGA-Q1-A73O-01 9 4125815 4125815 G C GLIS3 Missense_Mutation p.S172C 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-Q1-A73O-01 9 414809 414809 C T DOCK8 Silent p.V1186V 0.33 TCGA-Q1-A73O-01 9 6893199 6893199 C G KDM4C Silent p.V296V 0.39 TCGA-Q1-A73O-01 9 72787575 72787575 C T MAMDC2 Intron 0.47 TCGA-Q1-A73O-01 9 74298671 74298671 C T TMEM2 3'UTR 0.18 TCGA-Q1-A73O-01 9 78638713 78638713 G C PCSK5 Missense_Mutation p.K157N 0.23 deleterious(0) probably_damaging(0.98) TCGA-Q1-A73O-01 9 78936491 78936491 G A PCSK5 Silent p.V1319V 0.21 TCGA-Q1-A73O-01 9 80336364 80336364 C T GNAQ Missense_Mutation p.D319N 0.14 tolerated(0.19) benign(0.011) TCGA-Q1-A73O-01 9 86294834 86294834 G C UBQLN1 Missense_Mutation p.I189M 0.22 tolerated(0.16) probably_damaging(0.964) TCGA-Q1-A73O-01 9 86498737 86498737 C G KIF27 Silent p.L812L 0.13 TCGA-Q1-A73O-01 9 86498868 86498868 C G KIF27 Missense_Mutation p.E769Q 0.24 tolerated(0.06) benign(0.129) TCGA-Q1-A73O-01 9 86571476 86571476 C G C9orf64 5'UTR 0.38 TCGA-Q1-A73O-01 9 90387889 90387889 G A CTSL3P RNA 0.24 TCGA-Q1-A73O-01 9 90388092 90388092 C T CTSL3P RNA 0.18 TCGA-Q1-A73O-01 9 96000536 96000536 G C WNK2 Missense_Mutation p.E419Q 0.24 unknown(0) TCGA-Q1-A73O-01 9 96860086 96860086 G C PTPDC1 Missense_Mutation p.R411P 0.44 tolerated(0.18) benign(0.247) TCGA-Q1-A73O-01 9 97694040 97694040 C G C9orf3 Intron 0.30 TCGA-Q1-A73O-01 X 101624791 101624791 C G NXF2B Intron 0.34 TCGA-Q1-A73O-01 X 103434445 103434445 G C FAM199X Missense_Mutation p.D385H 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-Q1-A73O-01 X 104512091 104512091 G C IL1RAPL2 Missense_Mutation p.W188C 0.30 tolerated(0.11) probably_damaging(1) TCGA-Q1-A73O-01 X 106171611 106171611 G C CLDN2 Missense_Mutation p.W51C 0.28 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 X 106173935 106173935 G A CLDN2 3'UTR 0.21 TCGA-Q1-A73O-01 X 107304672 107304672 C T VSIG1 Silent p.L76L 0.23 TCGA-Q1-A73O-01 X 108786437 108786437 G C NXT2 3'UTR 0.23 TCGA-Q1-A73O-01 X 108787246 108787246 G C NXT2 3'UTR 0.20 TCGA-Q1-A73O-01 X 108887380 108887380 G C ACSL4 Missense_Mutation p.R672G 0.17 deleterious(0.01) benign(0.236) TCGA-Q1-A73O-01 X 109696910 109696910 C T RGAG1 Missense_Mutation p.S1022F 0.25 deleterious(0.01) possibly_damaging(0.824) TCGA-Q1-A73O-01 X 112054493 112054493 G C AMOT Missense_Mutation p.F507L 0.13 unknown(0) TCGA-Q1-A73O-01 X 11316904 11316904 C G AMELX Nonsense_Mutation p.Y141* 0.32 TCGA-Q1-A73O-01 X 114357165 114357165 G C LRCH2 Silent p.P701P 0.25 TCGA-Q1-A73O-01 X 114868346 114868346 G C PLS3 Missense_Mutation p.D179H 0.34 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 X 117528026 117528026 G C WDR44 Missense_Mutation p.E279Q 0.30 deleterious(0.04) benign(0.147) TCGA-Q1-A73O-01 X 117532408 117532408 G A WDR44 Missense_Mutation p.D417N 0.20 deleterious(0.01) possibly_damaging(0.76) TCGA-Q1-A73O-01 X 117817118 117817118 G C DOCK11 Missense_Mutation p.E2014Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-Q1-A73O-01 X 117925733 117925733 G A IL13RA1 Silent p.K400K 0.29 TCGA-Q1-A73O-01 X 129281546 129281546 G A AIFM1 Missense_Mutation p.S176L 0.28 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 X 130220320 130220320 G A ARHGAP36 Silent p.Q433Q 0.23 TCGA-Q1-A73O-01 X 13055202 13055202 C G FAM9C 3'UTR 0.40 TCGA-Q1-A73O-01 X 13061280 13061280 C T FAM9C Missense_Mutation p.R50K 0.21 tolerated(0.65) benign(0.364) TCGA-Q1-A73O-01 X 131351087 131351087 G C RAP2C Silent p.L70L 0.19 TCGA-Q1-A73O-01 X 138664030 138664030 G C MCF2 3'Flank 0.19 TCGA-Q1-A73O-01 X 138711977 138711977 C T MCF2 Silent p.V165V 0.17 TCGA-Q1-A73O-01 X 147032274 147032274 C T FMR1 3'UTR 0.23 TCGA-Q1-A73O-01 X 148074475 148074475 G A AFF2 3'UTR 0.33 TCGA-Q1-A73O-01 X 149638143 149638143 C G MAMLD1 Missense_Mutation p.H75D 0.30 deleterious(0.02) possibly_damaging(0.757) TCGA-Q1-A73O-01 X 149905769 149905769 C T MTMR1 Missense_Mutation p.S433F 0.26 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 X 149998024 149998024 G T CD99L2 Intron 0.20 TCGA-Q1-A73O-01 X 151818219 151818219 G A GABRQ Missense_Mutation p.E209K 0.38 deleterious(0.01) probably_damaging(0.942) TCGA-Q1-A73O-01 X 151908883 151908883 G A CSAG1 Missense_Mutation p.R41Q 0.25 deleterious_low_confidence(0.02) probably_damaging(0.947) TCGA-Q1-A73O-01 X 1520978 1520978 G A ASMTL 3'Flank 0.29 TCGA-Q1-A73O-01 X 154279971 154279971 A C FUNDC2 Missense_Mutation p.K129N 0.28 tolerated(0.07) probably_damaging(0.995) TCGA-Q1-A73O-01 X 154754122 154754123 AA - TMLHE Frame_Shift_Del p.F118Hfs*9 0.19 TCGA-Q1-A73O-01 X 1734097 1734097 G A ASMT Missense_Mutation p.G2E 0.28 tolerated(0.27) benign(0.386) TCGA-Q1-A73O-01 X 19021127 19021127 C G GPR64 Missense_Mutation p.K689N 0.32 tolerated(0.85) benign(0.001) TCGA-Q1-A73O-01 X 20029053 20029053 G C MAP7D2 Silent p.L730L 0.24 TCGA-Q1-A73O-01 X 20043927 20043927 C T MAP7D2 Missense_Mutation p.R384K 0.35 tolerated(0.61) benign(0.076) TCGA-Q1-A73O-01 X 24197734 24197734 G A ZFX Missense_Mutation p.E165K 0.26 deleterious(0.03) probably_damaging(0.995) TCGA-Q1-A73O-01 X 37312502 37312502 C G PRRG1 Silent p.L95L 0.15 TCGA-Q1-A73O-01 X 38665223 38665223 G A MID1IP1 3'UTR 0.22 TCGA-Q1-A73O-01 X 41204678 41204678 G C DDX3X Missense_Mutation p.D398H 0.20 tolerated(0.17) benign(0.007) TCGA-Q1-A73O-01 X 41401971 41401971 C G CASK Missense_Mutation p.D710H 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-Q1-A73O-01 X 47083012 47083012 G A CDK16 Missense_Mutation p.R93Q 0.33 tolerated_low_confidence(0.28) benign(0.301) TCGA-Q1-A73O-01 X 47084097 47084097 C T CDK16 Silent p.P213P 0.23 TCGA-Q1-A73O-01 X 47088689 47088689 G C CDK16 3'UTR 0.19 TCGA-Q1-A73O-01 X 47106748 47106748 G A USP11 Silent p.S865S 0.19 TCGA-Q1-A73O-01 X 47487588 47487588 C G CFP Missense_Mutation p.G106R 0.22 deleterious(0) probably_damaging(1) TCGA-Q1-A73O-01 X 47755275 47755275 C G ZNF81 Missense_Mutation p.F71L 0.24 deleterious(0.04) benign(0.002) TCGA-Q1-A73O-01 X 48121241 48121241 C T SSX1 Silent p.I107I 0.18 TCGA-Q1-A73O-01 X 48126319 48126319 G A SSX1 3'UTR 0.18 TCGA-Q1-A73O-01 X 48399807 48399807 C T TBC1D25 Silent p.L70L 0.11 TCGA-Q1-A73O-01 X 48456174 48456174 G A WDR13 5'UTR 0.29 TCGA-Q1-A73O-01 X 48674575 48674575 C G HDAC6 Missense_Mutation p.I507M 0.23 deleterious(0) probably_damaging(0.983) TCGA-Q1-A73O-01 X 49030742 49030742 C T PLP2 Missense_Mutation p.R136W 0.30 deleterious(0.02) benign(0.016) TCGA-Q1-A73O-01 X 49063285 49063285 G A CACNA1F Missense_Mutation p.P1766S 0.19 tolerated(0.36) benign(0.005) TCGA-Q1-A73O-01 X 50127785 50127785 C G DGKK RNA 0.24 TCGA-Q1-A73O-01 X 51076121 51076121 G T NUDT10 Nonsense_Mutation p.E102* 0.26 TCGA-Q1-A73O-01 X 51150246 51150246 G A CXorf67 Silent p.Q126Q 0.31 TCGA-Q1-A73O-01 X 53262697 53262697 G A IQSEC2 3'UTR 0.23 TCGA-Q1-A73O-01 X 54337697 54337697 G A WNK3 Nonsense_Mutation p.Q189* 0.29 TCGA-Q1-A73O-01 X 54784055 54784055 G A ITIH6 Missense_Mutation p.P818S 0.31 tolerated(0.16) benign(0.058) TCGA-Q1-A73O-01 X 55650352 55650352 G C FOXR2 Missense_Mutation p.D70H 0.24 deleterious(0) probably_damaging(0.989) TCGA-Q1-A73O-01 X 63410667 63410667 G T AMER1 Missense_Mutation p.L834I 0.15 tolerated(0.71) possibly_damaging(0.493) TCGA-Q1-A73O-01 X 64949447 64949447 G A MSN Missense_Mutation p.D114N 0.27 deleterious(0.01) possibly_damaging(0.716) TCGA-Q1-A73O-01 X 66905906 66905906 G A AR Missense_Mutation p.R608Q 0.34 deleterious(0) possibly_damaging(0.802) TCGA-Q1-A73O-01 X 68059873 68059873 G A EFNB1 Silent p.K190K 0.26 TCGA-Q1-A73O-01 X 70469443 70469443 C G ZMYM3 Silent p.L446L 0.19 TCGA-Q1-A73O-01 X 72434506 72434506 G A NAP1L2 5'UTR 0.28 TCGA-Q1-A73O-01 X 7268323 7268323 G A STS 3'UTR 0.24 TCGA-Q1-A73O-01 X 73046913 73046913 C G XIST RNA 0.20 TCGA-Q1-A73O-01 X 74523424 74523424 G A UPRT 3'UTR 0.30 TCGA-Q1-A73O-01 X 79931961 79931961 G C BRWD3 3'UTR 0.26 TCGA-Q1-A73O-01 X 83351282 83351282 C G RPS6KA6 Missense_Mutation p.E631Q 0.23 tolerated(0.13) benign(0.054) TCGA-Q1-A73O-01 X 84528331 84528331 G A ZNF711 3'UTR 0.20 TCGA-Q1-A73O-01 X 9914963 9914963 G A SHROOM2 Missense_Mutation p.E1613K 0.25 deleterious(0) probably_damaging(0.959) TCGA-Q1-A73P-01 10 102748742 102748742 G A C10orf2 Missense_Mutation p.E259K 0.35 tolerated(0.06) possibly_damaging(0.81) TCGA-Q1-A73P-01 10 104176405 104176405 C T PSD Missense_Mutation p.G131R 0.32 deleterious_low_confidence(0.01) benign(0.002) TCGA-Q1-A73P-01 10 104860427 104860427 G A NT5C2 Intron 0.28 TCGA-Q1-A73P-01 10 133976758 133976758 G A JAKMIP3 Missense_Mutation p.E754K 0.05 deleterious(0) possibly_damaging(0.543) TCGA-Q1-A73P-01 10 22048229 22048229 C G DNAJC1 Missense_Mutation p.R489T 0.32 tolerated(0.17) benign(0.159) TCGA-Q1-A73P-01 10 22048470 22048470 C T DNAJC1 Missense_Mutation p.D409N 0.33 tolerated(0.14) benign(0.115) TCGA-Q1-A73P-01 10 24923951 24923951 C T ARHGAP21 Missense_Mutation p.G117E 0.43 deleterious(0) probably_damaging(0.997) TCGA-Q1-A73P-01 10 28273994 28273994 G A ARMC4 Nonsense_Mutation p.Q177* 0.34 TCGA-Q1-A73P-01 10 71060532 71060532 G A HK1 Intron 0.38 TCGA-Q1-A73P-01 10 75255357 75255357 G C PPP3CB Intron 0.21 TCGA-Q1-A73P-01 10 8097584 8097584 G A GATA3 5'UTR 0.30 TCGA-Q1-A73P-01 10 875463 875463 C A LARP4B Silent p.V329V 0.30 TCGA-Q1-A73P-01 10 95720338 95720338 G C PIPSL RNA 0.37 TCGA-Q1-A73P-01 11 10024135 10024135 G A SBF2 Silent p.L241L 0.41 TCGA-Q1-A73P-01 11 10562858 10562858 C A RNF141 5'Flank 0.45 TCGA-Q1-A73P-01 11 10876296 10876296 C T ZBED5 Missense_Mutation p.G66E 0.33 deleterious_low_confidence(0) benign(0.427) TCGA-Q1-A73P-01 11 12695988 12695988 C T TEAD1 5'UTR 0.31 TCGA-Q1-A73P-01 11 12696049 12696049 C A TEAD1 5'UTR 0.32 TCGA-Q1-A73P-01 11 130749566 130749566 C T SNX19 Silent p.L933L 0.50 TCGA-Q1-A73P-01 11 2424850 2424850 C G TSSC4 Silent p.V329V 0.40 TCGA-Q1-A73P-01 11 43400840 43400840 G T TTC17 Nonsense_Mutation p.E73* 0.40 TCGA-Q1-A73P-01 11 46564315 46564315 C G AMBRA1 Missense_Mutation p.E328Q 0.29 deleterious_low_confidence(0) possibly_damaging(0.469) TCGA-Q1-A73P-01 11 47354759 47354759 C T MYBPC3 Missense_Mutation p.D1106N 0.38 deleterious(0) probably_damaging(0.985) TCGA-Q1-A73P-01 11 48327898 48327898 C T OR4S1 Silent p.L42L 0.34 TCGA-Q1-A73P-01 11 61569815 61569815 C T FADS1 3'UTR 0.33 TCGA-Q1-A73P-01 11 617419 617419 C G CDHR5 Missense_Mutation p.E824Q 0.25 tolerated(0.12) unknown(0) TCGA-Q1-A73P-01 11 62414999 62414999 G A INTS5 Silent p.F851F 0.31 TCGA-Q1-A73P-01 11 62519553 62519553 C T ZBTB3 3'UTR 0.45 TCGA-Q1-A73P-01 11 64004690 64004690 G A VEGFB Missense_Mutation p.D136N 0.09 tolerated(0.12) possibly_damaging(0.801) TCGA-Q1-A73P-01 11 64010958 64010958 C A FKBP2 Missense_Mutation p.P107Q 0.06 deleterious(0) probably_damaging(1) TCGA-Q1-A73P-01 11 64846846 64846846 C T CDCA5 Silent p.K219K 0.33 TCGA-Q1-A73P-01 11 64846883 64846883 C A CDCA5 Missense_Mutation p.G207V 0.41 deleterious(0) probably_damaging(1) TCGA-Q1-A73P-01 11 64855821 64855821 C T ZFPL1 3'UTR 0.26 TCGA-Q1-A73P-01 11 65009468 65009468 G C SLC22A20 RNA 0.28 TCGA-Q1-A73P-01 11 65546305 65546305 C A AP5B1 Missense_Mutation p.Q553H 0.31 deleterious(0.03) benign(0.01) TCGA-Q1-A73P-01 11 6662202 6662202 G A DCHS1 Nonsense_Mutation p.R215* 0.35 TCGA-Q1-A73P-01 11 71209451 71209451 G A NADSYN1 Silent p.K649K 0.07 TCGA-Q1-A73P-01 11 72070032 72070032 C A CLPB Missense_Mutation p.D253Y 0.29 deleterious(0.02) benign(0.141) TCGA-Q1-A73P-01 11 75897442 75897442 C T WNT11 3'UTR 0.41 TCGA-Q1-A73P-01 11 799519 799519 C A PIDD Nonsense_Mutation p.E841* 0.29 TCGA-Q1-A73P-01 11 800015 800015 C T PIDD Splice_Site p.X759_splice 0.29 TCGA-Q1-A73P-01 12 101769513 101769513 G A UTP20 Missense_Mutation p.E2459K 0.33 tolerated(0.07) benign(0.005) TCGA-Q1-A73P-01 12 115109794 115109794 C T TBX3 Missense_Mutation p.R695H 0.23 tolerated(0.21) benign(0.016) TCGA-Q1-A73P-01 12 120159185 120159185 C T CIT Missense_Mutation p.E1221K 0.25 deleterious(0.01) possibly_damaging(0.524) TCGA-Q1-A73P-01 12 120600704 120600706 TGG - GCN1L1 In_Frame_Del p.T703del 0.28 TCGA-Q1-A73P-01 12 122097188 122097188 C T MORN3 Missense_Mutation p.R71Q 0.36 deleterious(0.04) benign(0.382) TCGA-Q1-A73P-01 12 123798237 123798237 C T SBNO1 Missense_Mutation p.M1050I 0.46 deleterious(0.03) benign(0.399) TCGA-Q1-A73P-01 12 123801789 123801789 C T SBNO1 Missense_Mutation p.D972N 0.24 deleterious(0) possibly_damaging(0.764) TCGA-Q1-A73P-01 12 123805113 123805113 G A SBNO1 Nonsense_Mutation p.Q845* 0.45 TCGA-Q1-A73P-01 12 13208765 13208765 C G KIAA1467 Silent p.V106V 0.25 TCGA-Q1-A73P-01 12 133331702 133331702 C T ANKLE2 Missense_Mutation p.A67T 0.35 tolerated(0.25) benign(0.038) TCGA-Q1-A73P-01 12 22601673 22601673 G C C2CD5 3'UTR 0.29 TCGA-Q1-A73P-01 12 2904331 2904331 C T FKBP4 Missense_Mutation p.T9I 0.58 tolerated(0.18) benign(0.008) TCGA-Q1-A73P-01 12 32530820 32530820 G C BICD1 3'Flank 0.15 TCGA-Q1-A73P-01 12 40761532 40761562 TTAGCTGAAAAAATGAGACGAACATCTGTTG - LRRK2 Frame_Shift_Del p.L2517Sfs*11 0.26 TCGA-Q1-A73P-01 12 49487995 49487995 C T DHH Missense_Mutation p.E101K 0.48 tolerated(0.26) benign(0.03) TCGA-Q1-A73P-01 12 52967184 52967184 G A KRT74 Silent p.N126N 0.36 TCGA-Q1-A73P-01 12 53589846 53589846 G C ITGB7 Silent p.L318L 0.38 TCGA-Q1-A73P-01 12 54379697 54379697 G T HOXC10 Missense_Mutation p.Q218H 0.34 tolerated(0.12) possibly_damaging(0.76) TCGA-Q1-A73P-01 12 56553368 56553368 C G MYL6 Intron 0.38 TCGA-Q1-A73P-01 12 6974387 6974387 G A USP5 Missense_Mutation p.V820I 0.08 deleterious(0.04) possibly_damaging(0.787) TCGA-Q1-A73P-01 12 80651706 80651706 C A OTOGL Missense_Mutation p.Q596K 0.36 deleterious(0.04) possibly_damaging(0.491) TCGA-Q1-A73P-01 12 91371936 91371936 G A EPYC Missense_Mutation p.P90L 0.31 deleterious(0.03) possibly_damaging(0.517) TCGA-Q1-A73P-01 12 93169334 93169334 G C EEA1 3'UTR 0.31 TCGA-Q1-A73P-01 12 99145175 99145175 G A ANKS1B Silent p.S1210S 0.33 TCGA-Q1-A73P-01 13 114758023 114758023 C T RASA3 Missense_Mutation p.R728H 0.24 deleterious(0) probably_damaging(0.996) TCGA-Q1-A73P-01 13 20325522 20325522 C G PSPC1 Missense_Mutation p.E286Q 0.26 deleterious(0.01) probably_damaging(0.944) TCGA-Q1-A73P-01 13 20325600 20325600 C G PSPC1 Missense_Mutation p.E260Q 0.18 deleterious(0.04) probably_damaging(0.952) TCGA-Q1-A73P-01 13 26787679 26787679 A G RNF6 3'UTR 0.39 TCGA-Q1-A73P-01 13 31205523 31205523 G A USPL1 Silent p.S260S 0.33 TCGA-Q1-A73P-01 13 39587134 39587134 G C PROSER1 Missense_Mutation p.S752C 0.33 tolerated(0.07) possibly_damaging(0.497) TCGA-Q1-A73P-01 13 76374891 76374891 A C LMO7 5'UTR 0.24 TCGA-Q1-A73P-01 13 76374956 76374956 C G LMO7 5'UTR 0.39 TCGA-Q1-A73P-01 14 102829407 102829407 C T TECPR2 5'UTR 0.43 TCGA-Q1-A73P-01 14 105269550 105269550 G C ZBTB42 3'UTR 0.33 TCGA-Q1-A73P-01 14 23564376 23564376 C G ACIN1 Silent p.R40R 0.30 TCGA-Q1-A73P-01 14 31353728 31353728 C A COCH Intron 0.27 TCGA-Q1-A73P-01 14 32560776 32560776 C T ARHGAP5 Missense_Mutation p.P301S 0.38 tolerated(0.26) benign(0.013) TCGA-Q1-A73P-01 14 34269677 34269677 G A NPAS3 Missense_Mutation p.D722N 0.42 deleterious_low_confidence(0) benign(0.016) TCGA-Q1-A73P-01 14 56083234 56083234 G A KTN1 Splice_Site p.X175_splice 0.30 TCGA-Q1-A73P-01 14 62207503 62207503 C G HIF1A Missense_Mutation p.P588A 0.36 deleterious(0) probably_damaging(1) TCGA-Q1-A73P-01 14 75590851 75590851 C T NEK9 Missense_Mutation p.E99K 0.15 deleterious(0) probably_damaging(1) TCGA-Q1-A73P-01 14 76165591 76165591 G A TTLL5 Missense_Mutation p.R188Q 0.39 deleterious(0) possibly_damaging(0.87) TCGA-Q1-A73P-01 14 91948480 91948480 C G SMEK1 Missense_Mutation p.E119Q 0.32 tolerated(0.2) benign(0.192) TCGA-Q1-A73P-01 14 93706261 93706261 C T BTBD7 3'UTR 0.33 TCGA-Q1-A73P-01 14 96730334 96730334 C T BDKRB1 Silent p.F105F 0.39 TCGA-Q1-A73P-01 15 102303914 102303914 C T DNM1P47 RNA 0.50 TCGA-Q1-A73P-01 15 102506262 102506262 C G MIR1302-11 5'Flank 0.07 TCGA-Q1-A73P-01 15 23889144 23889144 C T MAGEL2 Missense_Mutation p.R646H 0.29 tolerated_low_confidence(0.87) benign(0.001) TCGA-Q1-A73P-01 15 24926948 24926948 G A NPAP1 3'UTR 0.23 TCGA-Q1-A73P-01 15 25616478 25616478 C T UBE3A Silent p.L284L 0.10 TCGA-Q1-A73P-01 15 26828494 26828494 G C GABRB3 Missense_Mutation p.L177V 0.30 tolerated(0.46) probably_damaging(0.999) TCGA-Q1-A73P-01 15 27114345 27114345 G T GABRA5 5'UTR 0.39 TCGA-Q1-A73P-01 15 29393976 29393976 G A APBA2 Missense_Mutation p.E505K 0.37 deleterious(0.02) possibly_damaging(0.74) TCGA-Q1-A73P-01 15 38644722 38644722 G C SPRED1 3'UTR 0.32 TCGA-Q1-A73P-01 15 42000403 42000403 G C MGA Missense_Mutation p.E808Q 0.21 deleterious(0.01) probably_damaging(0.978) TCGA-Q1-A73P-01 15 42127259 42127259 G T JMJD7-PLA2G4B Nonsense_Mutation p.E104* 0.25 TCGA-Q1-A73P-01 15 43270092 43270092 G A UBR1 Silent p.L1402L 0.31 TCGA-Q1-A73P-01 15 43724676 43724676 C G TP53BP1 Missense_Mutation p.E1131Q 0.29 tolerated(0.27) benign(0.139) TCGA-Q1-A73P-01 15 43821253 43821253 G A MAP1A Missense_Mutation p.E2528K 0.37 probably_damaging(0.996) TCGA-Q1-A73P-01 15 49935672 49935672 G T DTWD1 Missense_Mutation p.R271I 0.45 tolerated(0.11) benign(0.003) TCGA-Q1-A73P-01 15 52630033 52630033 G A MYO5A Intron 0.41 TCGA-Q1-A73P-01 15 57921908 57921908 C T GCOM1 Silent p.L178L 0.12 TCGA-Q1-A73P-01 15 63880981 63880981 G A USP3 Silent p.L432L 0.34 TCGA-Q1-A73P-01 15 66816043 66816043 G C ZWILCH Missense_Mutation p.R259T 0.36 deleterious(0) possibly_damaging(0.816) TCGA-Q1-A73P-01 15 69740381 69740381 G C KIF23 3'UTR 0.19 TCGA-Q1-A73P-01 15 72580886 72580886 C G CELF6 Missense_Mutation p.Q389H 0.37 tolerated(0.07) benign(0.077) TCGA-Q1-A73P-01 15 76071810 76071810 C A RP11-24M17.5 RNA 0.28 TCGA-Q1-A73P-01 15 78485950 78485950 G C ACSBG1 Missense_Mutation p.I187M 0.36 deleterious(0.01) possibly_damaging(0.886) TCGA-Q1-A73P-01 15 81624804 81624804 C T TMC3 Missense_Mutation p.E1087K 0.52 tolerated_low_confidence(0.18) benign(0.15) TCGA-Q1-A73P-01 15 89740217 89740217 C T ABHD2 3'UTR 0.17 TCGA-Q1-A73P-01 15 90972868 90972868 G C IQGAP1 Missense_Mutation p.L120F 0.42 tolerated(0.11) possibly_damaging(0.634) TCGA-Q1-A73P-01 15 95001386 95001386 G C MCTP2 Missense_Mutation p.L757F 0.39 tolerated(0.48) benign(0.047) TCGA-Q1-A73P-01 16 1258220 1258220 C T CACNA1H Missense_Mutation p.P1121L 0.05 tolerated(0.8) benign(0) TCGA-Q1-A73P-01 16 23226800 23226800 G A SCNN1G 3'UTR 0.32 TCGA-Q1-A73P-01 16 2333226 2333226 G A ABCA3 Silent p.L1332L 0.27 TCGA-Q1-A73P-01 16 28608320 28608320 G C SULT1A2 5'Flank 0.32 TCGA-Q1-A73P-01 16 3026898 3026898 G T PKMYT1 Silent p.R49R 0.32 TCGA-Q1-A73P-01 16 3072814 3072814 C T HCFC1R1 3'UTR 0.26 TCGA-Q1-A73P-01 16 58328947 58328947 C T PRSS54 5'UTR 0.44 TCGA-Q1-A73P-01 16 68371361 68371361 G A PRMT7 Splice_Site p.X131_splice 0.38 TCGA-Q1-A73P-01 16 68371400 68371400 G C PRMT7 Missense_Mutation p.E144Q 0.37 deleterious(0.02) probably_damaging(1) TCGA-Q1-A73P-01 16 68901039 68901039 C G TANGO6 Missense_Mutation p.L304V 0.32 deleterious(0.03) benign(0.1) TCGA-Q1-A73P-01 16 72132678 72132678 C T DHX38 Nonsense_Mutation p.R251* 0.41 TCGA-Q1-A73P-01 16 72845830 72845830 T - ZFHX3 Frame_Shift_Del p.T1213Qfs*31 0.08 TCGA-Q1-A73P-01 16 74709568 74709568 G A MLKL Missense_Mutation p.S378L 0.42 deleterious(0) probably_damaging(0.975) TCGA-Q1-A73P-01 16 85708640 85708640 C G GSE1 3'UTR 0.36 TCGA-Q1-A73P-01 16 88804271 88804271 G A PIEZO1 Intron 0.31 TCGA-Q1-A73P-01 16 88804492 88804492 G A PIEZO1 Silent p.F290F 0.33 TCGA-Q1-A73P-01 17 13399936 13399936 C T HS3ST3A1 Missense_Mutation p.E267K 0.25 deleterious(0) possibly_damaging(0.812) TCGA-Q1-A73P-01 17 25958285 25958285 C T LGALS9 5'UTR 0.30 TCGA-Q1-A73P-01 17 28961213 28961213 G C LRRC37BP1 RNA 0.39 TCGA-Q1-A73P-01 17 33690730 33690730 T C SLFN11 Missense_Mutation p.K33E 0.36 tolerated(0.44) benign(0.024) TCGA-Q1-A73P-01 17 34958134 34958134 G A MRM1 5'UTR 0.38 TCGA-Q1-A73P-01 17 36491017 36491017 C A GPR179 Missense_Mutation p.R515L 0.27 tolerated(0.07) possibly_damaging(0.73) TCGA-Q1-A73P-01 17 36499124 36499124 C T GPR179 Silent p.V183V 0.43 TCGA-Q1-A73P-01 17 37687590 37687590 G C CDK12 3'UTR 0.31 TCGA-Q1-A73P-01 17 40704915 40704915 C G HSD17B1 5'UTR 0.41 TCGA-Q1-A73P-01 17 40706695 40706695 C T HSD17B1 Silent p.L242L 0.46 TCGA-Q1-A73P-01 17 43362246 43362246 C G MAP3K14 RNA 0.43 TCGA-Q1-A73P-01 17 44060720 44060720 G A MAPT Missense_Mutation p.A184T 0.42 tolerated(0.27) benign(0.002) TCGA-Q1-A73P-01 17 44626584 44626584 C T LRRC37A2 Missense_Mutation p.S1360L 0.12 tolerated(0.06) benign(0.004) TCGA-Q1-A73P-01 17 4836613 4836613 C T GP1BA Silent p.D238D 0.34 TCGA-Q1-A73P-01 17 48683592 48683592 G A CACNA1G Intron 0.39 TCGA-Q1-A73P-01 17 5342165 5342165 C T C1QBP Missense_Mutation p.D77N 0.29 tolerated(0.06) benign(0.023) TCGA-Q1-A73P-01 17 57476528 57476528 C A YPEL2 3'UTR 0.41 TCGA-Q1-A73P-01 17 60038436 60038436 G A MED13 Nonsense_Mutation p.R1758* 0.35 TCGA-Q1-A73P-01 17 61476269 61476269 G C TANC2 Missense_Mutation p.E1035Q 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-Q1-A73P-01 17 73178933 73178933 G A SUMO2 5'UTR 0.37 TCGA-Q1-A73P-01 17 73233633 73233633 G T GGA3 3'UTR 0.50 TCGA-Q1-A73P-01 18 28956823 28956823 G A DSG4 5'Flank 0.36 TCGA-Q1-A73P-01 18 60242695 60242695 G T ZCCHC2 Missense_Mutation p.K1127N 0.47 deleterious(0) probably_damaging(0.994) TCGA-Q1-A73P-01 18 65180154 65180154 C T DSEL Missense_Mutation p.M574I 0.47 deleterious(0.05) probably_damaging(0.993) TCGA-Q1-A73P-01 18 6873519 6873519 G C ARHGAP28 Missense_Mutation p.D197H 0.41 deleterious(0) probably_damaging(0.91) TCGA-Q1-A73P-01 18 9792156 9792156 C T RAB31 Missense_Mutation p.S42F 0.44 deleterious(0.02) possibly_damaging(0.903) TCGA-Q1-A73P-01 19 1049293 1049293 G A ABCA7 Silent p.L803L 0.39 TCGA-Q1-A73P-01 19 11039449 11039449 C T C19orf52 5'UTR 0.40 TCGA-Q1-A73P-01 19 11322666 11322666 C T DOCK6 Intron 0.43 TCGA-Q1-A73P-01 19 12738878 12738878 G A ZNF791 Missense_Mutation p.E179K 0.35 tolerated(0.56) possibly_damaging(0.848) TCGA-Q1-A73P-01 19 14640413 14640413 C G TECR 5'UTR 0.37 TCGA-Q1-A73P-01 19 17291733 17291733 C T MYO9B Intron 0.49 TCGA-Q1-A73P-01 19 17937478 17937478 G C JAK3 3'UTR 0.45 TCGA-Q1-A73P-01 19 1816128 1816128 G A REXO1 Silent p.D1201D 0.49 TCGA-Q1-A73P-01 19 20829110 20829110 C G ZNF626 Missense_Mutation p.E35D 0.40 deleterious(0.02) probably_damaging(0.992) TCGA-Q1-A73P-01 19 21131718 21131718 G A ZNF85 Missense_Mutation p.G133E 0.31 tolerated(0.5) benign(0.016) TCGA-Q1-A73P-01 19 32845666 32845666 C T ZNF507 Missense_Mutation p.R644C 0.38 deleterious(0) probably_damaging(0.973) TCGA-Q1-A73P-01 19 37310175 37310175 C G ZNF790 Missense_Mutation p.Q357H 0.39 tolerated(0.09) probably_damaging(0.966) TCGA-Q1-A73P-01 19 39281369 39281369 G A LGALS7B Missense_Mutation p.D46N 0.24 tolerated(0.05) benign(0.288) TCGA-Q1-A73P-01 19 41025495 41025495 C G SPTBN4 Missense_Mutation p.L1031V 0.36 tolerated(0.08) probably_damaging(0.994) TCGA-Q1-A73P-01 19 42092925 42092925 G A CEACAM21 3'Flank 0.24 TCGA-Q1-A73P-01 19 43697463 43697463 G C PSG4 3'UTR 0.30 TCGA-Q1-A73P-01 19 44418462 44418462 G A ZNF45 Nonsense_Mutation p.Q376* 0.44 TCGA-Q1-A73P-01 19 4443035 4443035 C T CHAF1A 3'UTR 0.08 TCGA-Q1-A73P-01 19 47503760 47503760 C T ARHGAP35 Missense_Mutation p.R1439W 0.31 deleterious(0.02) possibly_damaging(0.804) TCGA-Q1-A73P-01 19 49230285 49230285 C T RASIP1 Missense_Mutation p.E668K 0.52 tolerated(0.12) probably_damaging(0.956) TCGA-Q1-A73P-01 19 52097529 52097529 C G AC018755.1 Missense_Mutation p.E16Q 0.25 possibly_damaging(0.607) TCGA-Q1-A73P-01 19 53740238 53740238 G C ZNF677 Nonsense_Mutation p.S581* 0.43 TCGA-Q1-A73P-01 19 56104929 56104929 G C FIZ1 Silent p.L126L 0.36 TCGA-Q1-A73P-01 19 57839243 57839243 G A ZNF543 Missense_Mutation p.G138E 0.35 tolerated(0.42) benign(0.02) TCGA-Q1-A73P-01 19 6413937 6413937 G A KHSRP 3'UTR 0.28 TCGA-Q1-A73P-01 19 807868 807868 G C PTBP1 Splice_Site p.X374_splice 0.41 TCGA-Q1-A73P-01 19 897394 897394 G A R3HDM4 3'UTR 0.05 TCGA-Q1-A73P-01 1 10697488 10697488 G T CASZ1 3'UTR 0.48 TCGA-Q1-A73P-01 1 10698098 10698098 G T CASZ1 3'UTR 0.34 TCGA-Q1-A73P-01 1 114380957 114380957 G T PTPN22 Missense_Mutation p.D355E 0.19 tolerated(0.17) benign(0.02) TCGA-Q1-A73P-01 1 115277086 115277086 G A CSDE1 Nonsense_Mutation p.Q233* 0.31 TCGA-Q1-A73P-01 1 117660797 117660797 G A TRIM45 Nonsense_Mutation p.Q361* 0.31 TCGA-Q1-A73P-01 1 1425636 1425636 G A ATAD3B Splice_Site p.X446_splice 0.37 TCGA-Q1-A73P-01 1 151498167 151498167 G A CGN Missense_Mutation p.R555Q 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-Q1-A73P-01 1 153954967 153954967 C G RAB13 Intron 0.24 TCGA-Q1-A73P-01 1 155532244 155532244 G C ASH1L 5'UTR 0.45 TCGA-Q1-A73P-01 1 156928604 156928604 C G ARHGEF11 Missense_Mutation p.D478H 0.37 tolerated(0.08) benign(0.036) TCGA-Q1-A73P-01 1 163117208 163117208 C G RGS5 Missense_Mutation p.R161T 0.50 deleterious(0.02) possibly_damaging(0.78) TCGA-Q1-A73P-01 1 16767192 16767192 C T NECAP2 5'Flank 0.39 TCGA-Q1-A73P-01 1 1677249 1677249 G C SLC35E2 5'UTR 0.69 TCGA-Q1-A73P-01 1 168216235 168216235 C G SFT2D2 3'UTR 0.23 TCGA-Q1-A73P-01 1 171605823 171605823 C G MYOC Missense_Mutation p.E253Q 0.32 deleterious(0.03) benign(0.367) TCGA-Q1-A73P-01 1 1718769 1718769 G A GNB1 3'UTR 0.29 TCGA-Q1-A73P-01 1 175360461 175360461 C T TNR Silent p.Q490Q 0.29 TCGA-Q1-A73P-01 1 184681603 184681603 G C EDEM3 Silent p.L500L 0.33 TCGA-Q1-A73P-01 1 184681623 184681623 G A EDEM3 Missense_Mutation p.H494Y 0.38 deleterious(0) probably_damaging(1) TCGA-Q1-A73P-01 1 198663212 198663212 G A PTPRC Intron 0.47 TCGA-Q1-A73P-01 1 20009783 20009783 G A TMCO4 Missense_Mutation p.S552L 0.28 tolerated(0.06) benign(0.035) TCGA-Q1-A73P-01 1 20009808 20009808 G A TMCO4 Missense_Mutation p.R544C 0.23 tolerated(0.06) benign(0.001) TCGA-Q1-A73P-01 1 201334773 201334773 G A TNNT2 Missense_Mutation p.P77S 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-Q1-A73P-01 1 207510124 207510124 C G CD55 Missense_Mutation p.Q314E 0.28 deleterious(0) benign(0.26) TCGA-Q1-A73P-01 1 216595454 216595454 A C USH2A Missense_Mutation p.S75R 0.24 benign(0.064) TCGA-Q1-A73P-01 1 243349710 243349710 C T CEP170 Missense_Mutation p.D375N 0.29 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73P-01 1 27425851 27425851 C T SLC9A1 3'UTR 0.39 TCGA-Q1-A73P-01 1 35654964 35654964 G A SFPQ Missense_Mutation p.R479C 0.39 deleterious(0) probably_damaging(0.985) TCGA-Q1-A73P-01 1 36030852 36030852 G A NCDN Missense_Mutation p.R593Q 0.10 tolerated(0.48) benign(0.013) TCGA-Q1-A73P-01 1 3645929 3645929 G T TP73 Silent p.L371L 0.40 TCGA-Q1-A73P-01 1 3645942 3645942 G C TP73 Missense_Mutation p.E376Q 0.41 deleterious(0) probably_damaging(0.976) TCGA-Q1-A73P-01 1 42049029 42049029 C G HIVEP3 Missense_Mutation p.E480D 0.39 probably_damaging(0.99) TCGA-Q1-A73P-01 1 45272313 45272313 G T TCTEX1D4 Missense_Mutation p.R10S 0.29 tolerated(0.41) benign(0.061) TCGA-Q1-A73P-01 1 46806552 46806552 C T NSUN4 Silent p.L18L 0.45 TCGA-Q1-A73P-01 1 46808703 46808703 C T NSUN4 Intron 0.46 TCGA-Q1-A73P-01 1 52195561 52195561 C T OSBPL9 Intron 0.26 TCGA-Q1-A73P-01 1 54675624 54675624 C A MRPL37 Missense_Mutation p.L218I 0.37 tolerated(0.26) benign(0.004) TCGA-Q1-A73P-01 1 57399128 57399128 C T C8B Missense_Mutation p.D478N 0.47 tolerated(0.19) benign(0.105) TCGA-Q1-A73P-01 1 59042151 59042151 G A TACSTD2 Silent p.F226F 0.23 TCGA-Q1-A73P-01 1 78430025 78430025 A G FUBP1 Missense_Mutation p.F285S 0.28 tolerated(0.09) possibly_damaging(0.484) TCGA-Q1-A73P-01 1 8045140 8045140 G C PARK7 3'UTR 0.30 TCGA-Q1-A73P-01 1 86591519 86591519 G T COL24A1 Missense_Mutation p.A167D 0.29 deleterious(0.02) probably_damaging(1) TCGA-Q1-A73P-01 1 90482950 90482950 C G ZNF326 Missense_Mutation p.S334C 0.36 deleterious(0.03) possibly_damaging(0.82) TCGA-Q1-A73P-01 1 99771889 99771889 G A LPPR4 Missense_Mutation p.E539K 0.38 deleterious(0) probably_damaging(0.997) TCGA-Q1-A73P-01 20 20054995 20054995 C T C20orf26 Missense_Mutation p.S115F 0.30 deleterious(0) possibly_damaging(0.807) TCGA-Q1-A73P-01 20 2315841 2315841 G A TGM3 Silent p.A574A 0.34 TCGA-Q1-A73P-01 20 34292194 34292194 G A RBM39 3'UTR 0.18 TCGA-Q1-A73P-01 20 36031920 36031920 C G SRC 3'UTR 0.24 TCGA-Q1-A73P-01 20 40733326 40733326 C T PTPRT Silent p.L1141L 0.31 TCGA-Q1-A73P-01 20 50051763 50051763 C T NFATC2 Missense_Mutation p.R665K 0.20 tolerated(0.06) probably_damaging(0.987) TCGA-Q1-A73P-01 20 57428252 57428252 C T GNAS 5'UTR 0.30 TCGA-Q1-A73P-01 20 5924565 5924565 T C TRMT6 Intron 0.57 TCGA-Q1-A73P-01 20 6022388 6022388 C T LRRN4 Silent p.Q501Q 0.50 TCGA-Q1-A73P-01 20 61290075 61290075 G C SLCO4A1 Silent p.L281L 0.28 TCGA-Q1-A73P-01 20 62196064 62196064 G A HELZ2 Missense_Mutation p.H1371Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73P-01 21 31768787 31768787 G C KRTAP13-1 Missense_Mutation p.R128T 0.32 deleterious(0.03) possibly_damaging(0.633) TCGA-Q1-A73P-01 21 40177467 40177467 G C ETS2 5'UTR 0.19 TCGA-Q1-A73P-01 22 18301126 18301126 G A MICAL3 Missense_Mutation p.S1434F 0.42 probably_damaging(0.997) TCGA-Q1-A73P-01 22 24460540 24460540 G C CABIN1 Missense_Mutation p.E643Q 0.06 tolerated(0.15) probably_damaging(0.993) TCGA-Q1-A73P-01 22 25024698 25024698 C T GGT1 Silent p.T534T 0.26 TCGA-Q1-A73P-01 22 25777487 25777487 C T LRP5L 5'UTR 0.39 TCGA-Q1-A73P-01 22 35695799 35695799 C T TOM1 5'UTR 0.50 TCGA-Q1-A73P-01 22 40060829 40060829 C T CACNA1I Missense_Mutation p.S1251F 0.39 deleterious(0) possibly_damaging(0.788) TCGA-Q1-A73P-01 22 40728715 40728715 C T TNRC6B 3'UTR 0.40 TCGA-Q1-A73P-01 22 41829641 41829641 C G TOB2 3'UTR 0.34 TCGA-Q1-A73P-01 22 44083357 44083357 C G EFCAB6 Missense_Mutation p.R379T 0.45 tolerated(0.06) benign(0.231) TCGA-Q1-A73P-01 2 108478127 108478127 G C RGPD4 Silent p.L712L 0.25 TCGA-Q1-A73P-01 2 113090736 113090736 G A ZC3H6 3'UTR 0.24 TCGA-Q1-A73P-01 2 128341727 128341727 C T MYO7B Silent p.N458N 0.33 TCGA-Q1-A73P-01 2 130680519 130680519 G A AC079776.3 5'Flank 0.35 TCGA-Q1-A73P-01 2 201846253 201846253 G A FAM126B Silent p.L445L 0.32 TCGA-Q1-A73P-01 2 202494551 202494551 G A TMEM237 Missense_Mutation p.S193L 0.40 deleterious(0.02) possibly_damaging(0.831) TCGA-Q1-A73P-01 2 202565871 202565871 G A ALS2 3'UTR 0.33 TCGA-Q1-A73P-01 2 204822519 204822519 C T ICOS Intron 0.47 TCGA-Q1-A73P-01 2 231380748 231380748 C A SP100 Intron 0.20 TCGA-Q1-A73P-01 2 27438606 27438606 A G ATRAID Missense_Mutation p.N213D 0.31 tolerated(0.1) benign(0.004) TCGA-Q1-A73P-01 2 29087905 29087905 C T TRMT61B Missense_Mutation p.M260I 0.25 deleterious(0.02) possibly_damaging(0.815) TCGA-Q1-A73P-01 2 32772925 32772925 G T BIRC6 Silent p.V4273V 0.31 TCGA-Q1-A73P-01 2 36775709 36775709 G A CRIM1 Silent p.K992K 0.30 TCGA-Q1-A73P-01 2 42578441 42578441 C T COX7A2L Missense_Mutation p.R88Q 0.35 tolerated(0.05) benign(0.017) TCGA-Q1-A73P-01 2 45800396 45800396 G A SRBD1 Silent p.L419L 0.23 TCGA-Q1-A73P-01 2 74783590 74783590 C G DOK1 Silent p.L265L 0.24 TCGA-Q1-A73P-01 2 86260874 86260874 C T POLR1A Silent p.K1357K 0.09 TCGA-Q1-A73P-01 2 97427598 97427598 C T CNNM4 Nonsense_Mutation p.Q288* 0.32 TCGA-Q1-A73P-01 3 10312369 10312369 C T TATDN2 Silent p.H501H 0.18 TCGA-Q1-A73P-01 3 121190912 121190912 G A POLQ Nonsense_Mutation p.Q2215* 0.44 TCGA-Q1-A73P-01 3 121305032 121305032 C T ARGFX Missense_Mutation p.S178F 0.42 tolerated(0.09) benign(0.075) TCGA-Q1-A73P-01 3 128292008 128292008 C T C3orf27 3'UTR 0.33 TCGA-Q1-A73P-01 3 152018043 152018043 G T MBNL1 Nonsense_Mutation p.E21* 0.36 TCGA-Q1-A73P-01 3 152018051 152018051 G T MBNL1 Missense_Mutation p.Q23H 0.35 deleterious(0) possibly_damaging(0.847) TCGA-Q1-A73P-01 3 155588567 155588567 C G GMPS 5'UTR 0.44 TCGA-Q1-A73P-01 3 176742887 176742887 G T TBL1XR1 3'UTR 0.27 TCGA-Q1-A73P-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.31 deleterious(0.04) probably_damaging(0.96) TCGA-Q1-A73P-01 3 184795908 184795908 C G C3orf70 3'UTR 0.23 TCGA-Q1-A73P-01 3 192516720 192516720 G A MB21D2 Nonsense_Mutation p.Q311* 0.21 TCGA-Q1-A73P-01 3 194947580 194947580 G A XXYLT1 Silent p.I170I 0.30 TCGA-Q1-A73P-01 3 197619502 197619502 C T IQCG Silent p.K364K 0.41 TCGA-Q1-A73P-01 3 39144311 39144312 - GCTT GORASP1 Frame_Shift_Ins p.L69Qfs*43 0.35 TCGA-Q1-A73P-01 3 42700892 42700892 G T ZBTB47 Nonsense_Mutation p.E349* 0.45 TCGA-Q1-A73P-01 3 44966448 44966448 G A ZDHHC3 3'UTR 0.26 TCGA-Q1-A73P-01 3 44966931 44966931 G A ZDHHC3 3'UTR 0.57 TCGA-Q1-A73P-01 3 52088244 52088244 C T DUSP7 Missense_Mutation p.D222N 0.36 tolerated(0.05) probably_damaging(0.984) TCGA-Q1-A73P-01 3 52825555 52825555 T G ITIH1 Silent p.G839G 0.41 TCGA-Q1-A73P-01 3 53925851 53925851 C A SELK 5'UTR 0.24 TCGA-Q1-A73P-01 3 7678036 7678036 C T GRM7 Intron 0.32 TCGA-Q1-A73P-01 4 10509620 10509620 C T CLNK Missense_Mutation p.R316H 0.53 deleterious(0) probably_damaging(1) TCGA-Q1-A73P-01 4 10542129 10542129 C G CLNK Missense_Mutation p.Q197H 0.35 tolerated(0.12) benign(0.1) TCGA-Q1-A73P-01 4 140281017 140281017 G A NAA15 Missense_Mutation p.E460K 0.22 tolerated(0.1) benign(0.347) TCGA-Q1-A73P-01 4 152041870 152041870 C G SH3D19 3'UTR 0.36 TCGA-Q1-A73P-01 4 15569333 15569333 C T CC2D2A Nonsense_Mutation p.Q1108* 0.28 TCGA-Q1-A73P-01 4 156283223 156283223 G A MAP9 Missense_Mutation p.S260F 0.31 tolerated(0.08) benign(0.221) TCGA-Q1-A73P-01 4 169196651 169196651 C T DDX60 Missense_Mutation p.A717T 0.30 tolerated(0.71) benign(0.006) TCGA-Q1-A73P-01 4 186366517 186366517 C G CCDC110 3'UTR 0.18 TCGA-Q1-A73P-01 4 2906605 2906605 G A ADD1 Missense_Mutation p.D426N 0.31 deleterious(0) possibly_damaging(0.627) TCGA-Q1-A73P-01 4 39123529 39123529 G C KLHL5 3'Flank 0.41 TCGA-Q1-A73P-01 4 40351049 40351050 TT - CHRNA9 Frame_Shift_Del p.F173Wfs*23 0.35 TCGA-Q1-A73P-01 4 40818235 40818235 C A APBB2 Missense_Mutation p.Q718H 0.38 tolerated(0.07) benign(0.021) TCGA-Q1-A73P-01 4 42403549 42403549 G A SHISA3 3'UTR 0.25 TCGA-Q1-A73P-01 4 6718768 6718768 C T BLOC1S4 3'UTR 0.47 TCGA-Q1-A73P-01 4 69962710 69962710 G A UGT2B7 Missense_Mutation p.E158K 0.48 deleterious(0) possibly_damaging(0.452) TCGA-Q1-A73P-01 4 79353577 79353577 C T FRAS1 Missense_Mutation p.T1679I 0.09 benign(0.016) TCGA-Q1-A73P-01 5 112418618 112418618 C T MCC Missense_Mutation p.G575R 0.29 tolerated(0.24) probably_damaging(0.999) TCGA-Q1-A73P-01 5 114466485 114466485 G A TRIM36 Silent p.L546L 0.44 TCGA-Q1-A73P-01 5 140232492 140232492 C A PCDHA9 Intron 0.29 TCGA-Q1-A73P-01 5 140256735 140256735 G A PCDHA12 Missense_Mutation p.D560N 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-Q1-A73P-01 5 140698981 140698981 G - TAF7 Frame_Shift_Del p.H211Mfs*4 0.39 TCGA-Q1-A73P-01 5 147040859 147040859 G C JAKMIP2 Missense_Mutation p.I93M 0.24 deleterious(0.03) possibly_damaging(0.471) TCGA-Q1-A73P-01 5 148208075 148208075 C T ADRB2 3'UTR 0.33 TCGA-Q1-A73P-01 5 148697431 148697431 C A AFAP1L1 Silent p.A469A 0.46 TCGA-Q1-A73P-01 5 149776211 149776211 C T TCOF1 Missense_Mutation p.S1383F 0.29 deleterious(0) probably_damaging(0.966) TCGA-Q1-A73P-01 5 153377387 153377387 G C FAM114A2 Missense_Mutation p.F435L 0.24 deleterious(0.01) possibly_damaging(0.801) TCGA-Q1-A73P-01 5 154272083 154272083 C T GEMIN5 Silent p.L1208L 0.36 TCGA-Q1-A73P-01 5 154317604 154317604 G A GEMIN5 Silent p.F30F 0.39 TCGA-Q1-A73P-01 5 159680108 159680108 G A CCNJL 3'UTR 0.41 TCGA-Q1-A73P-01 5 159680542 159680542 G A CCNJL Missense_Mutation p.P384L 0.39 tolerated(0.08) benign(0.012) TCGA-Q1-A73P-01 5 169533237 169533237 G A FOXI1 Silent p.Q92Q 0.42 TCGA-Q1-A73P-01 5 36608694 36608694 G T SLC1A3 Missense_Mutation p.A57S 0.32 tolerated(0.33) benign(0.393) TCGA-Q1-A73P-01 5 76633065 76633065 A C PDE8B Missense_Mutation p.N241T 0.21 tolerated(0.23) benign(0.035) TCGA-Q1-A73P-01 6 114378975 114378975 C G HS3ST5 Missense_Mutation p.E163Q 0.35 tolerated(0.1) benign(0.007) TCGA-Q1-A73P-01 6 136600994 136600994 G A BCLAF1 Missense_Mutation p.S4F 0.35 deleterious_low_confidence(0) unknown(0) TCGA-Q1-A73P-01 6 151422762 151422762 G C MTHFD1L 3'UTR 0.34 TCGA-Q1-A73P-01 6 152652986 152652986 C T SYNE1 Silent p.L4278L 0.38 TCGA-Q1-A73P-01 6 159644608 159644608 C T FNDC1 Missense_Mutation p.S272L 0.26 deleterious(0.01) unknown(0) TCGA-Q1-A73P-01 6 16327578 16327578 C G ATXN1 Missense_Mutation p.E322Q 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-Q1-A73P-01 6 163736061 163736061 G T PACRG 3'UTR 0.29 TCGA-Q1-A73P-01 6 167570420 167570420 G C GPR31 Silent p.L300L 0.34 TCGA-Q1-A73P-01 6 17831361 17831361 G A KIF13A Missense_Mutation p.L458F 0.32 deleterious(0) possibly_damaging(0.891) TCGA-Q1-A73P-01 6 24423832 24423832 G C MRS2 Missense_Mutation p.K414N 0.25 deleterious_low_confidence(0) benign(0.105) TCGA-Q1-A73P-01 6 29794774 29794774 G C HLA-G 5'UTR 0.36 TCGA-Q1-A73P-01 6 29911061 29911061 G C HLA-A Missense_Mutation p.Q120H 0.43 deleterious_low_confidence(0) benign(0.032) TCGA-Q1-A73P-01 6 31557651 31557651 C T NCR3 Missense_Mutation p.R99Q 0.43 tolerated(0.63) benign(0.004) TCGA-Q1-A73P-01 6 34210518 34210518 G C HMGA1 Missense_Mutation p.K55N 0.30 deleterious(0) unknown(0) TCGA-Q1-A73P-01 6 4116258 4116258 C A ECI2 Missense_Mutation p.L345F 0.31 deleterious(0.01) possibly_damaging(0.742) TCGA-Q1-A73P-01 6 42796705 42796705 C T GLTSCR1L Nonsense_Mutation p.Q212* 0.18 TCGA-Q1-A73P-01 6 43237400 43237400 C T TTBK1 Intron 0.35 TCGA-Q1-A73P-01 6 43470323 43470323 C G TJAP1 Intron 0.29 TCGA-Q1-A73P-01 6 44414598 44414598 C G CDC5L 3'UTR 0.11 TCGA-Q1-A73P-01 6 56483917 56483917 C T DST Intron 0.18 TCGA-Q1-A73P-01 6 79577322 79577322 G C IRAK1BP1 Missense_Mutation p.R10P 0.34 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73P-01 6 89563357 89563357 G A RNGTT Silent p.L341L 0.22 TCGA-Q1-A73P-01 6 90402195 90402195 C A MDN1 Missense_Mutation p.Q3518H 0.26 benign(0.035) TCGA-Q1-A73P-01 7 100190413 100190413 C T FBXO24 Missense_Mutation p.S227L 0.17 deleterious_low_confidence(0.01) benign(0.32) TCGA-Q1-A73P-01 7 100201588 100201588 G A PCOLCE Missense_Mutation p.E71K 0.35 tolerated(0.08) benign(0.19) TCGA-Q1-A73P-01 7 103162496 103162496 C T RELN Silent p.A2547A 0.54 TCGA-Q1-A73P-01 7 107013082 107013082 C T COG5 Missense_Mutation p.D296N 0.28 deleterious(0.01) benign(0.188) TCGA-Q1-A73P-01 7 108204499 108204499 A G THAP5 3'UTR 0.13 TCGA-Q1-A73P-01 7 116830921 116830921 G A ST7 Silent p.L395L 0.35 TCGA-Q1-A73P-01 7 124386317 124386317 A T GPR37 3'UTR 0.32 TCGA-Q1-A73P-01 7 23651037 23651037 C T CCDC126 Nonsense_Mutation p.Q35* 0.35 TCGA-Q1-A73P-01 7 64023445 64023445 G C ZNF680 5'UTR 0.28 TCGA-Q1-A73P-01 7 66460307 66460307 T A SBDS Missense_Mutation p.K33I 0.35 deleterious(0) probably_damaging(0.96) TCGA-Q1-A73P-01 7 66461962 66461962 G T TYW1 5'UTR 0.37 TCGA-Q1-A73P-01 7 75172205 75172205 G A HIP1 Missense_Mutation p.S952L 0.27 deleterious(0) probably_damaging(0.981) TCGA-Q1-A73P-01 7 86415790 86415790 G A GRM3 Missense_Mutation p.E228K 0.25 deleterious(0) possibly_damaging(0.694) TCGA-Q1-A73P-01 7 88962994 88962994 C T ZNF804B Missense_Mutation p.S233F 0.11 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73P-01 8 101961105 101961105 C G YWHAZ Missense_Mutation p.E5Q 0.37 tolerated_low_confidence(0.09) benign(0.057) TCGA-Q1-A73P-01 8 104427430 104427430 C G DCAF13 Missense_Mutation p.S71W 0.36 deleterious_low_confidence(0) possibly_damaging(0.581) TCGA-Q1-A73P-01 8 11708427 11708428 TG - CTSB Frame_Shift_Del p.Q92Vfs*27 0.29 TCGA-Q1-A73P-01 8 122626929 122626929 C T HAS2 Missense_Mutation p.R360Q 0.34 deleterious(0) probably_damaging(1) TCGA-Q1-A73P-01 8 139165096 139165096 G A FAM135B Missense_Mutation p.P541L 0.26 tolerated(0.56) benign(0.002) TCGA-Q1-A73P-01 8 144734970 144734970 C G ZNF623 3'UTR 0.31 TCGA-Q1-A73P-01 8 145095183 145095183 G A SPATC1 Silent p.L195L 0.35 TCGA-Q1-A73P-01 8 146105925 146105925 G C ZNF250 3'UTR 0.08 TCGA-Q1-A73P-01 8 22141712 22141712 C T PIWIL2 Nonsense_Mutation p.Q224* 0.43 TCGA-Q1-A73P-01 8 42693360 42693360 G C THAP1 Silent p.L129L 0.38 TCGA-Q1-A73P-01 8 56015610 56015610 C T XKR4 Missense_Mutation p.P188S 0.19 tolerated_low_confidence(0.84) probably_damaging(0.96) TCGA-Q1-A73P-01 8 9634219 9634219 C T TNKS Silent p.T1319T 0.42 TCGA-Q1-A73P-01 9 101747953 101747953 C T COL15A1 Silent p.F69F 0.36 TCGA-Q1-A73P-01 9 104123293 104123293 G A BAAT 3'UTR 0.22 TCGA-Q1-A73P-01 9 117143510 117143510 C G AKNA Missense_Mutation p.R35T 0.31 tolerated(0.24) benign(0.115) TCGA-Q1-A73P-01 9 123783960 123783960 C T C5 Missense_Mutation p.D377N 0.28 deleterious(0.03) benign(0.242) TCGA-Q1-A73P-01 9 124062204 124062204 C T GSN Missense_Mutation p.S22L 0.47 tolerated_low_confidence(0.17) benign(0) TCGA-Q1-A73P-01 9 130829407 130829407 G C NAIF1 5'UTR 0.42 TCGA-Q1-A73P-01 9 130932385 130932385 C T CIZ1 Missense_Mutation p.E649K 0.21 tolerated(0.07) benign(0.131) TCGA-Q1-A73P-01 9 131079489 131079489 G A TRUB2 Silent p.F86F 0.19 TCGA-Q1-A73P-01 9 135374101 135374101 G A C9orf171 Missense_Mutation p.R108Q 0.38 tolerated(0.22) benign(0.346) TCGA-Q1-A73P-01 9 139650308 139650308 G A LCN8 Intron 0.22 TCGA-Q1-A73P-01 9 139694867 139694867 C T CCDC183 Silent p.I155I 0.26 TCGA-Q1-A73P-01 9 139903454 139903454 C A ABCA2 Silent p.V2293V 0.19 TCGA-Q1-A73P-01 9 18776963 18776963 G A ADAMTSL1 Silent p.E912E 0.33 TCGA-Q1-A73P-01 9 26905108 26905108 G A PLAA 3'UTR 0.29 TCGA-Q1-A73P-01 9 4711369 4711369 G - AK3 3'UTR 0.30 TCGA-Q1-A73P-01 9 77300582 77300582 G A RORB 3'UTR 0.33 TCGA-Q1-A73P-01 9 82341510 82341510 C T TLE4 3'Flank 0.25 TCGA-Q1-A73P-01 9 84606835 84606835 C T SPATA31D1 Nonsense_Mutation p.Q484* 0.37 TCGA-Q1-A73P-01 X 101911587 101911587 G C GPRASP1 Missense_Mutation p.E916Q 0.24 tolerated(0.06) possibly_damaging(0.479) TCGA-Q1-A73P-01 X 102337006 102337006 G A NXF3 Intron 0.30 TCGA-Q1-A73P-01 X 102508555 102508555 C G TCEAL8 Nonstop_Mutation p.*118Sext*20 0.29 TCGA-Q1-A73P-01 X 105281067 105281067 C G SERPINA7 5'UTR 0.50 TCGA-Q1-A73P-01 X 110653588 110653588 C G DCX Missense_Mutation p.K94N 0.37 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-Q1-A73P-01 X 117119271 117119271 C T KLHL13 5'Flank 0.23 TCGA-Q1-A73P-01 X 119760656 119760656 C T C1GALT1C1 Missense_Mutation p.M122I 0.37 tolerated(0.23) benign(0.049) TCGA-Q1-A73P-01 X 122387169 122387169 C T GRIA3 Missense_Mutation p.S95L 0.50 deleterious(0) probably_damaging(0.955) TCGA-Q1-A73P-01 X 123514180 123514180 C G TENM1 3'UTR 0.35 TCGA-Q1-A73P-01 X 130222682 130222682 C T ARHGAP36 Missense_Mutation p.P523S 0.38 tolerated(0.39) benign(0.046) TCGA-Q1-A73P-01 X 130412691 130412691 C T IGSF1 Nonsense_Mutation p.W600* 0.22 TCGA-Q1-A73P-01 X 135732428 135732428 G C CD40LG Missense_Mutation p.E54Q 0.47 tolerated(0.12) benign(0.026) TCGA-Q1-A73P-01 X 138813883 138813883 G T ATP11C Nonsense_Mutation p.S1110* 0.35 TCGA-Q1-A73P-01 X 146993665 146993665 C T FMR1 5'UTR 0.32 TCGA-Q1-A73P-01 X 151909235 151909235 G A CSAG1 3'UTR 0.05 TCGA-Q1-A73P-01 X 152227687 152227687 C A PNMA3 3'UTR 0.33 TCGA-Q1-A73P-01 X 16836838 16836838 G A TXLNG Missense_Mutation p.E82K 0.36 tolerated(0.1) benign(0.159) TCGA-Q1-A73P-01 X 30872913 30872913 G A TAB3 Missense_Mutation p.S290F 0.54 deleterious(0.01) benign(0.306) TCGA-Q1-A73P-01 X 37027934 37027934 C T FAM47C Missense_Mutation p.S484F 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-Q1-A73P-01 X 41205783 41205783 C T DDX3X Missense_Mutation p.S508L 0.36 deleterious(0) possibly_damaging(0.837) TCGA-Q1-A73P-01 X 47002088 47002088 C G NDUFB11 Missense_Mutation p.R88P 0.38 deleterious(0) probably_damaging(0.992) TCGA-Q1-A73P-01 X 47836511 47836511 T A ZNF182 Missense_Mutation p.K325N 0.13 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73P-01 X 47836895 47836895 C G ZNF182 Missense_Mutation p.E197D 0.07 tolerated(0.29) benign(0.135) TCGA-Q1-A73P-01 X 68749583 68749583 C T FAM155B Silent p.Y401Y 0.33 TCGA-Q1-A73P-01 X 77912163 77912163 G A ZCCHC5 3'UTR 0.45 TCGA-Q1-A73P-01 X 84520160 84520160 G A ZNF711 Missense_Mutation p.S272N 0.29 tolerated(1) benign(0.001) TCGA-Q1-A73P-01 X 84533027 84533027 G T POF1B 3'UTR 0.36 TCGA-Q1-A73P-01 X 99546804 99546804 C T PCDH19 3'UTR 0.08 TCGA-Q1-A73Q-01 10 50030495 50030495 C T WDFY4 Silent p.T1965T 0.36 TCGA-Q1-A73Q-01 10 65381258 65381258 G A REEP3 3'UTR 0.40 TCGA-Q1-A73Q-01 10 97951700 97951700 G A BLNK 3'UTR 0.29 TCGA-Q1-A73Q-01 10 99439625 99439625 G A AVPI1 Missense_Mutation p.P13L 0.39 tolerated(0.27) benign(0.014) TCGA-Q1-A73Q-01 11 67353652 67353652 G C GSTP1 Missense_Mutation p.Q138H 0.05 tolerated(0.28) benign(0.005) TCGA-Q1-A73Q-01 11 726667 726667 C T EPS8L2 Silent p.L661L 0.78 TCGA-Q1-A73Q-01 11 76925776 76925776 C G MYO7A 3'UTR 0.56 TCGA-Q1-A73Q-01 11 92895923 92895923 A C SLC36A4 Missense_Mutation p.F329C 0.69 deleterious(0.01) possibly_damaging(0.501) TCGA-Q1-A73Q-01 12 122265698 122265698 G A SETD1B Missense_Mutation p.A1800T 0.49 unknown(0) TCGA-Q1-A73Q-01 12 3677981 3677981 C G PRMT8 Silent p.L197L 0.41 TCGA-Q1-A73Q-01 13 23909371 23909371 G A SACS Missense_Mutation p.H2882Y 0.78 probably_damaging(0.985) TCGA-Q1-A73Q-01 14 102476247 102476247 C T DYNC1H1 Silent p.F2015F 0.46 TCGA-Q1-A73Q-01 14 102476369 102476369 C T DYNC1H1 Missense_Mutation p.S2056L 0.29 probably_damaging(0.999) TCGA-Q1-A73Q-01 14 106209248 106209248 G A IGHG1 Missense_Mutation p.P54L 0.39 deleterious(0) probably_damaging(0.984) TCGA-Q1-A73Q-01 14 20841187 20841187 C A TEP1 Missense_Mutation p.A2312S 0.50 deleterious(0.02) benign(0.152) TCGA-Q1-A73Q-01 14 22971236 22971236 G A TRAJ38 Silent p.K8K 0.51 TCGA-Q1-A73Q-01 14 59112864 59112864 A G DACT1 Missense_Mutation p.K508R 0.06 tolerated(0.21) possibly_damaging(0.599) TCGA-Q1-A73Q-01 14 95884083 95884083 T G SYNE3 3'UTR 0.46 TCGA-Q1-A73Q-01 15 60715127 60715127 C G NARG2 3'UTR 0.50 TCGA-Q1-A73Q-01 15 69018362 69018362 C T CORO2B 3'UTR 0.36 TCGA-Q1-A73Q-01 16 3777208 3777208 G A CREBBP 3'UTR 0.45 TCGA-Q1-A73Q-01 16 48139110 48139110 G A ABCC12 Silent p.F871F 0.48 TCGA-Q1-A73Q-01 16 53670409 53670409 G A RPGRIP1L Missense_Mutation p.S1079L 0.28 deleterious(0.05) benign(0.091) TCGA-Q1-A73Q-01 16 56899245 56899245 C A SLC12A3 Missense_Mutation p.P33Q 0.09 tolerated(0.45) benign(0.004) TCGA-Q1-A73Q-01 16 57417218 57417218 C T CX3CL1 3'UTR 0.39 TCGA-Q1-A73Q-01 16 69786243 69786243 G A NOB1 Silent p.Y76Y 0.39 TCGA-Q1-A73Q-01 16 70166131 70166131 C G PDPR Missense_Mutation p.P309A 0.07 tolerated(1) possibly_damaging(0.721) TCGA-Q1-A73Q-01 16 71765265 71765265 G A AP1G1 3'Flank 0.31 TCGA-Q1-A73Q-01 17 1477899 1477899 G A SLC43A2 3'UTR 0.32 TCGA-Q1-A73Q-01 17 32964460 32964460 C A TMEM132E Missense_Mutation p.H722N 0.48 deleterious(0.01) benign(0.077) TCGA-Q1-A73Q-01 17 33904998 33904998 C T PEX12 Missense_Mutation p.D15N 0.43 tolerated(0.38) possibly_damaging(0.808) TCGA-Q1-A73Q-01 17 43348487 43348487 G A MAP3K14-AS1 3'Flank 0.37 TCGA-Q1-A73Q-01 17 44269896 44269896 C T KANSL1 5'UTR 0.06 TCGA-Q1-A73Q-01 18 21125040 21125040 C T NPC1 Missense_Mutation p.D611N 0.32 deleterious(0) probably_damaging(0.961) TCGA-Q1-A73Q-01 19 15198689 15198689 C A OR1I1 Missense_Mutation p.D271E 0.33 tolerated(0.18) benign(0.158) TCGA-Q1-A73Q-01 19 17611439 17611439 C G SLC27A1 Nonsense_Mutation p.S490* 0.39 TCGA-Q1-A73Q-01 19 19672668 19672668 G A PBX4 3'UTR 0.53 TCGA-Q1-A73Q-01 19 19672669 19672669 C A PBX4 3'UTR 0.53 TCGA-Q1-A73Q-01 19 35837090 35837090 G A CD22 Silent p.P788P 0.22 TCGA-Q1-A73Q-01 19 36243396 36243396 C T LIN37 Intron 0.37 TCGA-Q1-A73Q-01 19 38572484 38572484 G A SIPA1L3 Silent p.L93L 0.37 TCGA-Q1-A73Q-01 19 40357710 40357710 G T FCGBP Silent p.S5201S 0.50 TCGA-Q1-A73Q-01 19 41117815 41117815 G C LTBP4 Missense_Mutation p.E769Q 0.40 tolerated(0.11) probably_damaging(0.994) TCGA-Q1-A73Q-01 19 49557662 49557662 C A CGB7 Missense_Mutation p.L128F 0.38 tolerated(0.7) benign(0.081) TCGA-Q1-A73Q-01 19 53303143 53303143 T C ZNF28 Missense_Mutation p.Y652C 0.06 tolerated(0.11) possibly_damaging(0.905) TCGA-Q1-A73Q-01 19 55107748 55107748 G A LILRA1 Silent p.P351P 0.46 TCGA-Q1-A73Q-01 19 7076482 7076482 G A ZNF557 Missense_Mutation p.V71M 0.32 deleterious(0) benign(0.044) TCGA-Q1-A73Q-01 1 149784945 149784945 C T HIST2H3D Missense_Mutation p.E98K 0.61 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-Q1-A73Q-01 1 151826155 151826155 C G THEM5 5'UTR 0.16 TCGA-Q1-A73Q-01 1 232650405 232650405 A G SIPA1L2 Silent p.P227P 0.12 TCGA-Q1-A73Q-01 1 27440672 27440672 G A SLC9A1 Missense_Mutation p.P153L 0.43 deleterious(0.04) benign(0.068) TCGA-Q1-A73Q-01 1 27683547 27683547 G A MAP3K6 Missense_Mutation p.S1106L 0.53 deleterious(0) benign(0.146) TCGA-Q1-A73Q-01 1 32198739 32198739 G A BAI2 Missense_Mutation p.S1153L 0.33 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73Q-01 1 34112290 34112290 C T CSMD2 Missense_Mutation p.D1538N 0.59 deleterious(0) possibly_damaging(0.888) TCGA-Q1-A73Q-01 1 45241245 45241246 TC - RPS8 5'UTR 0.32 TCGA-Q1-A73Q-01 1 6635241 6635241 G A TAS1R1 Missense_Mutation p.R350K 0.29 tolerated(0.87) benign(0.004) TCGA-Q1-A73Q-01 20 43804667 43804667 G A PI3 Missense_Mutation p.R82Q 0.25 tolerated(0.42) benign(0.02) TCGA-Q1-A73Q-01 20 44569823 44569823 G A PCIF1 Missense_Mutation p.R217Q 0.15 tolerated(1) benign(0.002) TCGA-Q1-A73Q-01 20 47570311 47570311 A T ARFGEF2 Missense_Mutation p.R274S 0.15 tolerated(0.71) benign(0) TCGA-Q1-A73Q-01 20 55212976 55212976 G A TFAP2C Silent p.L420L 0.47 TCGA-Q1-A73Q-01 20 8628578 8628578 G A PLCB1 Missense_Mutation p.E166K 0.50 deleterious(0) benign(0.184) TCGA-Q1-A73Q-01 2 152470946 152470946 G - NEB Frame_Shift_Del p.F3815Lfs*20 0.26 TCGA-Q1-A73Q-01 2 17696788 17696788 C G RAD51AP2 Missense_Mutation p.K965N 0.38 deleterious(0) possibly_damaging(0.859) TCGA-Q1-A73Q-01 2 178085343 178085344 - TAACC HNRNPA3 3'Flank 0.22 TCGA-Q1-A73Q-01 2 191236083 191236083 G A INPP1 Silent p.L385L 0.39 TCGA-Q1-A73Q-01 2 220159753 220159753 G A PTPRN Silent p.L873L 0.37 TCGA-Q1-A73Q-01 2 239972610 239972610 C T HDAC4 3'UTR 0.42 TCGA-Q1-A73Q-01 3 112358468 112358468 C A CCDC80 Silent p.S95S 0.22 TCGA-Q1-A73Q-01 3 141011697 141011697 G A ACPL2 Missense_Mutation p.E365K 0.58 tolerated(0.61) benign(0.015) TCGA-Q1-A73Q-01 3 14105630 14105630 G A TPRXL 5'UTR 0.11 TCGA-Q1-A73Q-01 3 180337738 180337740 TTC - CCDC39 In_Frame_Del p.E673del 0.45 TCGA-Q1-A73Q-01 3 183469915 183469915 C G YEATS2 Missense_Mutation p.Q342E 0.93 tolerated(0.16) benign(0.002) TCGA-Q1-A73Q-01 3 183469988 183469988 C G YEATS2 Missense_Mutation p.S366C 0.93 deleterious(0.01) possibly_damaging(0.503) TCGA-Q1-A73Q-01 3 425496 425496 C G CHL1 Intron 0.74 TCGA-Q1-A73Q-01 4 110971055 110971055 A T ELOVL6 3'UTR 0.10 TCGA-Q1-A73Q-01 4 151504436 151504436 C T MAB21L2 Silent p.V85V 0.35 TCGA-Q1-A73Q-01 4 40045080 40045080 G A RP11-333E13.4 RNA 0.30 TCGA-Q1-A73Q-01 4 4864435 4864435 G A MSX1 Silent p.L159L 0.54 TCGA-Q1-A73Q-01 4 86844842 86844842 C T ARHGAP24 Missense_Mutation p.L104F 0.47 deleterious(0) benign(0.314) TCGA-Q1-A73Q-01 4 88414908 88414908 G A SPARCL1 Silent p.G348G 0.28 TCGA-Q1-A73Q-01 5 125820204 125820205 - T GRAMD3 Frame_Shift_Ins p.V337Cfs*13 0.31 TCGA-Q1-A73Q-01 5 134120125 134120125 G C DDX46 Missense_Mutation p.L412F 0.46 deleterious(0.02) probably_damaging(0.989) TCGA-Q1-A73Q-01 5 156522377 156522377 C T HAVCR2 Missense_Mutation p.G206R 0.58 deleterious(0) probably_damaging(0.921) TCGA-Q1-A73Q-01 5 23522499 23522499 G A PRDM9 Missense_Mutation p.D199N 0.46 deleterious(0.03) possibly_damaging(0.771) TCGA-Q1-A73Q-01 5 55212739 55212739 C A IL31RA Missense_Mutation p.P696T 0.35 deleterious(0.05) possibly_damaging(0.804) TCGA-Q1-A73Q-01 5 56207082 56207082 C T SETD9 Missense_Mutation p.A62V 0.33 tolerated(0.09) probably_damaging(0.989) TCGA-Q1-A73Q-01 5 82785938 82785938 C T VCAN Missense_Mutation p.P31L 0.52 tolerated(0.11) benign(0.022) TCGA-Q1-A73Q-01 6 130462073 130462073 T - L3MBTL3 3'UTR 0.09 TCGA-Q1-A73Q-01 6 45290613 45290613 C T SUPT3H Intron 0.22 TCGA-Q1-A73Q-01 6 5368821 5368821 C G FARS2 Silent p.L6L 0.46 TCGA-Q1-A73Q-01 6 70099081 70099081 T G BAI3 3'UTR 0.43 TCGA-Q1-A73Q-01 6 74117275 74117275 C A DDX43 Missense_Mutation p.T325N 0.43 deleterious(0) possibly_damaging(0.494) TCGA-Q1-A73Q-01 6 90090009 90090009 G A RRAGD Silent p.F174F 0.08 TCGA-Q1-A73Q-01 6 97609947 97609947 C G MMS22L Missense_Mutation p.D1106H 0.34 deleterious(0.01) possibly_damaging(0.835) TCGA-Q1-A73Q-01 6 97609972 97609972 G C MMS22L Silent p.L1097L 0.34 TCGA-Q1-A73Q-01 7 127014880 127014880 T C ZNF800 Missense_Mutation p.I170M 0.54 tolerated(0.23) benign(0.135) TCGA-Q1-A73Q-01 8 80831357 80831357 C T MRPS28 Missense_Mutation p.R141Q 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-Q1-A73Q-01 9 100618664 100618664 C T FOXE1 3'UTR 0.44 TCGA-Q1-A73Q-01 9 71395260 71395260 G A FAM122A Silent p.R60R 0.50 TCGA-Q1-A73Q-01 9 96015293 96015293 C T WNK2 Missense_Mutation p.P655S 0.43 unknown(0) TCGA-Q1-A73Q-01 X 122761592 122761592 G A THOC2 Silent p.V903V 0.31 TCGA-Q1-A73Q-01 X 12939924 12939924 G C TLR8 Missense_Mutation p.W922S 0.42 deleterious(0) probably_damaging(1) TCGA-Q1-A73Q-01 X 137793681 137793681 C T FGF13 Intron 0.06 TCGA-Q1-A73Q-01 X 148607378 148607378 C T IDS Intron 0.27 TCGA-Q1-A73Q-01 X 41588228 41588228 C G GPR82 3'UTR 0.39 TCGA-Q1-A73Q-01 X 47065692 47065699 TGGAGTCA - UBA1 Frame_Shift_Del p.L596Rfs*28 0.36 TCGA-Q1-A73Q-01 X 55028832 55028832 G T APEX2 Missense_Mutation p.E130D 0.39 deleterious(0.01) probably_damaging(0.989) TCGA-Q1-A73Q-01 X 64139211 64139211 C G ZC4H2 Intron 0.62 TCGA-Q1-A73Q-01 X 69255774 69255774 G T EDA 3'UTR 0.14 TCGA-Q1-A73Q-01 X 83357098 83357098 C T RPS6KA6 Missense_Mutation p.E575K 0.33 deleterious(0.01) benign(0.119) TCGA-Q1-A73Q-01 X 83362646 83362646 C T RPS6KA6 Missense_Mutation p.A366T 0.41 tolerated(0.12) benign(0.216) TCGA-Q1-A73R-01 10 105816868 105816868 C T COL17A1 Missense_Mutation p.A444T 0.23 unknown(0) TCGA-Q1-A73R-01 10 112039840 112039840 C T MXI1 Nonsense_Mutation p.R241* 0.49 TCGA-Q1-A73R-01 10 124516286 124516286 C T DMBT1P1 RNA 0.58 TCGA-Q1-A73R-01 10 13687647 13687647 T C FRMD4A 3'UTR 0.44 TCGA-Q1-A73R-01 11 118764809 118764809 C T CXCR5 Missense_Mutation p.L186F 0.36 tolerated(0.13) benign(0.398) TCGA-Q1-A73R-01 11 56569578 56569578 C T OR5G5P RNA 0.31 TCGA-Q1-A73R-01 11 6631719 6631719 C T ILK Silent p.T412T 0.40 TCGA-Q1-A73R-01 11 73021308 73021308 G A ARHGEF17 Missense_Mutation p.R542Q 0.56 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-Q1-A73R-01 12 11174729 11174729 T A TAS2R19 Missense_Mutation p.T148S 0.38 tolerated(0.7) benign(0.004) TCGA-Q1-A73R-01 12 13065422 13065422 C T GPRC5A Silent p.H341H 0.20 TCGA-Q1-A73R-01 12 29649490 29649490 T C OVCH1 Missense_Mutation p.Q61R 0.38 deleterious(0.02) probably_damaging(0.974) TCGA-Q1-A73R-01 12 31944230 31944230 A T H3F3C 3'UTR 0.08 TCGA-Q1-A73R-01 12 49426773 49426773 C T KMT2D Silent p.Q3905Q 0.42 TCGA-Q1-A73R-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.49 deleterious(0.05) possibly_damaging(0.789) TCGA-Q1-A73R-01 12 6132797 6132797 G A VWF Missense_Mutation p.P1127S 0.46 deleterious(0.02) possibly_damaging(0.743) TCGA-Q1-A73R-01 13 30087610 30087610 T G SLC7A1 3'UTR 0.21 TCGA-Q1-A73R-01 14 34998644 34998644 C T EAPP Silent p.K130K 0.46 TCGA-Q1-A73R-01 14 50263033 50263033 G A NEMF Intron 0.62 TCGA-Q1-A73R-01 14 58768295 58768295 C G ARID4A Intron 0.81 TCGA-Q1-A73R-01 15 101844271 101844271 C A PCSK6 3'UTR 0.45 TCGA-Q1-A73R-01 15 44719687 44719688 - T CTDSPL2 5'UTR 0.48 TCGA-Q1-A73R-01 15 65558985 65558985 C A PARP16 Missense_Mutation p.R145L 0.25 tolerated(0.07) benign(0.264) TCGA-Q1-A73R-01 15 74887963 74887964 - C ARID3B Frame_Shift_Ins p.Q512Pfs*69 0.35 TCGA-Q1-A73R-01 16 29088021 29088021 C T RRN3P2 RNA 0.45 TCGA-Q1-A73R-01 16 618442 618442 C T NHLRC4 3'UTR 0.37 TCGA-Q1-A73R-01 16 65038559 65038559 C T CDH11 Missense_Mutation p.V72M 0.24 tolerated(0.19) possibly_damaging(0.798) TCGA-Q1-A73R-01 17 11778359 11778359 G A DNAH9 Missense_Mutation p.D3446N 0.52 probably_damaging(0.957) TCGA-Q1-A73R-01 17 61904937 61904937 G A FTSJ3 5'UTR 0.64 TCGA-Q1-A73R-01 17 73206024 73206024 C G NUP85 Missense_Mutation p.I78M 0.48 deleterious(0) probably_damaging(0.996) TCGA-Q1-A73R-01 17 74394424 74394424 G T UBE2O Missense_Mutation p.A646D 0.41 tolerated(0.58) probably_damaging(0.96) TCGA-Q1-A73R-01 17 8091761 8091761 C T C17orf59 3'UTR 0.47 TCGA-Q1-A73R-01 18 57020469 57020469 G A LMAN1 Nonsense_Mutation p.R202* 0.48 TCGA-Q1-A73R-01 19 16870140 16870140 G A NWD1 Missense_Mutation p.R625H 0.46 deleterious(0.03) possibly_damaging(0.855) TCGA-Q1-A73R-01 19 43411950 43411950 C G PSG6 Missense_Mutation p.D255H 0.43 deleterious(0.01) probably_damaging(0.934) TCGA-Q1-A73R-01 1 114935823 114935823 C T TRIM33 3'UTR 0.47 TCGA-Q1-A73R-01 1 117910706 117910706 G A MAN1A2 5'UTR 0.38 TCGA-Q1-A73R-01 1 152058923 152058923 G A TCHHL1 Missense_Mutation p.T412I 0.37 tolerated(0.24) benign(0.059) TCGA-Q1-A73R-01 1 153012728 153012728 C G SPRR2D Missense_Mutation p.C32S 0.22 deleterious_low_confidence(0) unknown(0) TCGA-Q1-A73R-01 1 200376059 200376059 G A ZNF281 3'UTR 0.27 TCGA-Q1-A73R-01 1 245772793 245772793 G A KIF26B Missense_Mutation p.G626D 0.32 deleterious(0) unknown(0) TCGA-Q1-A73R-01 1 27278790 27278790 C A C1orf172 Nonsense_Mutation p.E28* 0.44 TCGA-Q1-A73R-01 1 3639972 3639973 - GTAT TP73 Frame_Shift_Ins p.D227Cfs*3 0.89 TCGA-Q1-A73R-01 1 44413090 44413090 C T IPO13 5'UTR 0.70 TCGA-Q1-A73R-01 1 62566054 62566054 C T INADL Intron 0.49 TCGA-Q1-A73R-01 1 76276488 76276488 T C MSH4 Missense_Mutation p.F232S 0.37 deleterious(0) probably_damaging(0.943) TCGA-Q1-A73R-01 22 21998485 21998485 A G SDF2L1 3'UTR 0.44 TCGA-Q1-A73R-01 22 40283779 40283779 G A ENTHD1 5'UTR 0.53 TCGA-Q1-A73R-01 2 102509218 102509218 A C FLJ20373 5'UTR 0.43 TCGA-Q1-A73R-01 2 102509222 102509222 T G FLJ20373 5'UTR 0.42 TCGA-Q1-A73R-01 2 179582536 179582536 C T TTN Silent p.A8355A 0.40 TCGA-Q1-A73R-01 2 186670333 186670333 G A FSIP2 Missense_Mutation p.A5523T 0.10 benign(0.111) TCGA-Q1-A73R-01 2 233274625 233274625 C T ALPPL2 3'UTR 0.17 TCGA-Q1-A73R-01 2 73481928 73481928 G A FBXO41 3'UTR 0.38 TCGA-Q1-A73R-01 2 91843515 91843515 G T AC027612.6 RNA 0.13 TCGA-Q1-A73R-01 3 20017662 20017662 G A RAB5A Splice_Site p.X146_splice 0.36 TCGA-Q1-A73R-01 3 39449940 39449940 G A RPSA Intron 0.44 TCGA-Q1-A73R-01 4 103987647 103987647 C T SLC9B2 Silent p.K36K 0.43 TCGA-Q1-A73R-01 4 111397949 111397949 G A ENPEP Missense_Mutation p.A127T 0.28 tolerated(0.11) benign(0.026) TCGA-Q1-A73R-01 4 122791567 122791567 C G BBS7 5'UTR 0.30 TCGA-Q1-A73R-01 4 140258071 140258071 G A NAA15 Missense_Mutation p.R70H 0.23 deleterious(0) probably_damaging(0.999) TCGA-Q1-A73R-01 4 184175053 184175053 G A WWC2 Missense_Mutation p.R366H 0.51 deleterious(0.04) probably_damaging(0.999) TCGA-Q1-A73R-01 4 41259024 41259024 G C UCHL1 Missense_Mutation p.E11Q 0.07 tolerated(0.07) benign(0.137) TCGA-Q1-A73R-01 5 140595503 140595503 C T PCDHB13 Missense_Mutation p.S603L 0.46 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-Q1-A73R-01 5 140751844 140751844 C T PCDHGB3 Missense_Mutation p.T628M 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-Q1-A73R-01 6 124979592 124979592 G A NKAIN2 Intron 0.74 TCGA-Q1-A73R-01 6 145119050 145119050 C T UTRN Nonsense_Mutation p.R3057* 0.08 TCGA-Q1-A73R-01 6 31868724 31868724 C T ZBTB12 Missense_Mutation p.R120Q 0.39 deleterious(0) possibly_damaging(0.553) TCGA-Q1-A73R-01 7 39746660 39746660 A G RALA 3'UTR 0.44 TCGA-Q1-A73R-01 7 6777361 6777361 G A PMS2CL RNA 0.39 TCGA-Q1-A73R-01 8 134145855 134145855 C T TG Silent p.A2713A 0.53 TCGA-Q1-A73R-01 9 2193472 2193472 C T SMARCA2 3'UTR 0.47 TCGA-Q1-A73R-01 9 27949873 27949873 A T LINGO2 Missense_Mutation p.F266Y 0.14 tolerated(1) benign(0) TCGA-Q1-A73R-01 9 36222893 36222893 G A GNE Missense_Mutation p.S536F 0.41 deleterious_low_confidence(0) possibly_damaging(0.509) TCGA-Q1-A73R-01 X 118724034 118724034 C T NKRF Missense_Mutation p.V467M 0.28 deleterious(0) probably_damaging(0.992) TCGA-Q1-A73R-01 X 150157308 150157308 T C HMGB3 3'UTR 0.09 TCGA-Q1-A73R-01 X 153763558 153763558 G A G6PD Missense_Mutation p.R134C 0.16 tolerated(0.15) benign(0.005) TCGA-Q1-A73R-01 X 20179862 20179862 T A RPS6KA3 Missense_Mutation p.N620I 0.43 deleterious(0.03) probably_damaging(0.933) TCGA-Q1-A73R-01 X 39931728 39931728 C T BCOR Silent p.P957P 0.35 TCGA-Q1-A73R-01 X 39933165 39933165 G A BCOR Silent p.S478S 0.43 TCGA-Q1-A73R-01 X 53262415 53262415 T A IQSEC2 3'UTR 0.22 TCGA-Q1-A73R-01 X 78622732 78622732 C T ITM2A 5'UTR 0.48 TCGA-Q1-A73R-01 X 84528215 84528215 T A ZNF711 3'UTR 0.44 TCGA-Q1-A73R-01 X 99942284 99942284 C A SYTL4 Intron 0.51 TCGA-Q1-A73S-01 11 73717220 73717220 C T UCP3 Missense_Mutation p.A111T 0.55 tolerated(0.49) benign(0.001) TCGA-Q1-A73S-01 12 64173715 64173715 G C TMEM5 5'UTR 0.33 TCGA-Q1-A73S-01 13 29599910 29599910 G T MTUS2 Missense_Mutation p.A369S 0.54 tolerated(0.34) benign(0.058) TCGA-Q1-A73S-01 13 49030460 49030461 CT - RB1 Frame_Shift_Del p.L647Ffs*5 0.32 TCGA-Q1-A73S-01 15 25430615 25430615 G A SNORD115-10 5'Flank 0.65 TCGA-Q1-A73S-01 15 41861203 41861203 C A TYRO3 Missense_Mutation p.S412Y 0.61 tolerated(0.06) benign(0.396) TCGA-Q1-A73S-01 15 42147040 42147040 C T SPTBN5 Silent p.Q3186Q 0.45 TCGA-Q1-A73S-01 15 78398263 78398263 G T CIB2 Missense_Mutation p.D120E 0.37 deleterious(0) possibly_damaging(0.877) TCGA-Q1-A73S-01 15 91034759 91034759 G A IQGAP1 Silent p.L1481L 0.22 TCGA-Q1-A73S-01 15 91488276 91488276 T C UNC45A Silent p.L394L 0.35 TCGA-Q1-A73S-01 17 16734868 16734868 C T KRT16P2 RNA 1.00 TCGA-Q1-A73S-01 17 68173515 68173515 T C KCNJ2 3'UTR 0.37 TCGA-Q1-A73S-01 19 11129654 11129654 C A SMARCA4 Nonsense_Mutation p.Y820* 0.94 TCGA-Q1-A73S-01 19 15225450 15225450 G C SYDE1 3'UTR 0.25 TCGA-Q1-A73S-01 19 15225451 15225451 A G SYDE1 3'UTR 0.13 TCGA-Q1-A73S-01 19 42492666 42492666 G A ATP1A3 Missense_Mutation p.R32C 0.34 deleterious(0) benign(0.083) TCGA-Q1-A73S-01 19 46215154 46215154 G A FBXO46 Missense_Mutation p.R534C 0.50 deleterious(0) probably_damaging(0.968) TCGA-Q1-A73S-01 19 51986481 51986481 G A CEACAM18 Missense_Mutation p.R356Q 0.50 tolerated(0.06) probably_damaging(0.999) TCGA-Q1-A73S-01 20 44669971 44669971 C A SLC12A5 Silent p.I309I 0.56 TCGA-Q1-A73S-01 22 37771911 37771911 G C ELFN2 5'UTR 0.32 TCGA-Q1-A73S-01 2 128409331 128409331 C T GPR17 3'UTR 0.27 TCGA-Q1-A73S-01 2 163393474 163393474 C T KCNH7 Missense_Mutation p.E142K 0.40 tolerated(0.13) benign(0.015) TCGA-Q1-A73S-01 2 196729468 196729468 T C DNAH7 Missense_Mutation p.N2304S 0.08 deleterious(0) probably_damaging(1) TCGA-Q1-A73S-01 2 234104109 234104109 C T INPP5D Silent p.H875H 0.28 TCGA-Q1-A73S-01 2 242148707 242148707 G A ANO7 Missense_Mutation p.R416Q 0.17 tolerated(0.24) benign(0.183) TCGA-Q1-A73S-01 2 71213755 71213755 C G TEX261 3'UTR 0.31 TCGA-Q1-A73S-01 3 22424272 22424272 T C HMGB1P5 RNA 0.11 TCGA-Q1-A73S-01 3 4358097 4358097 C T SETMAR Missense_Mutation p.R408W 0.92 tolerated_low_confidence(0.13) unknown(0) TCGA-Q1-A73S-01 4 102776233 102776233 C T BANK1 Nonsense_Mutation p.R171* 0.81 TCGA-Q1-A73S-01 4 88257898 88257898 G C HSD17B11 3'UTR 0.67 TCGA-Q1-A73S-01 5 133915871 133915871 G C JADE2 3'UTR 0.48 TCGA-Q1-A73S-01 5 150030778 150030778 A G SYNPO 3'UTR 0.54 TCGA-Q1-A73S-01 6 160998167 160998167 C T LPA Splice_Site p.X1544_splice 0.47 TCGA-Q1-A73S-01 6 26446061 26446061 C T BTN3A3 Missense_Mutation p.P188L 0.41 tolerated(0.14) benign(0.027) TCGA-Q1-A73S-01 7 44809102 44809102 A C ZMIZ2 3'UTR 0.53 TCGA-Q1-A73S-01 7 47408811 47408811 G A TNS3 Silent p.L478L 0.24 TCGA-Q1-A73S-01 7 64388860 64388860 A T ZNF273 Missense_Mutation p.Q385L 0.45 tolerated(0.7) benign(0.048) TCGA-Q1-A73S-01 X 69722398 69722398 C G DLG3 3'UTR 0.30 TCGA-Q1-A73S-01 X 85128100 85128100 G C CHM Missense_Mutation p.S576C 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-R2-A69V-01 10 12142181 12142181 G C DHTKD1 Missense_Mutation p.R559T 0.06 deleterious(0) probably_damaging(1) TCGA-R2-A69V-01 10 129231692 129231692 G C DOCK1 Missense_Mutation p.G1666A 0.12 tolerated(0.19) benign(0) TCGA-R2-A69V-01 10 30615518 30615518 G A MTPAP Missense_Mutation p.S276L 0.11 deleterious(0) probably_damaging(0.994) TCGA-R2-A69V-01 10 43287211 43287211 C T BMS1 Missense_Mutation p.A258V 0.08 tolerated(0.33) benign(0.057) TCGA-R2-A69V-01 10 50916674 50916674 A G C10orf53 3'UTR 0.14 TCGA-R2-A69V-01 10 72531094 72531094 C A TBATA 3'UTR 0.12 TCGA-R2-A69V-01 10 79569484 79569484 C G DLG5 Missense_Mutation p.A1490P 0.19 tolerated(1) benign(0.042) TCGA-R2-A69V-01 10 93252122 93252122 G C HECTD2 Missense_Mutation p.R438T 0.09 tolerated(0.08) benign(0.001) TCGA-R2-A69V-01 11 119045734 119045734 G C NLRX1 Silent p.L474L 0.26 TCGA-R2-A69V-01 11 119050694 119050694 C T NLRX1 Missense_Mutation p.A655V 0.12 tolerated(0.11) benign(0.341) TCGA-R2-A69V-01 11 12316007 12316007 C A MICALCL Silent p.L343L 0.08 TCGA-R2-A69V-01 11 18733675 18733675 C G IGSF22 Silent p.V784V 0.13 TCGA-R2-A69V-01 11 45275950 45275950 C G SYT13 Missense_Mutation p.V139L 0.12 tolerated(0.25) benign(0.073) TCGA-R2-A69V-01 11 56258761 56258761 A G OR5M8 Missense_Mutation p.L29P 0.13 deleterious(0) possibly_damaging(0.873) TCGA-R2-A69V-01 11 57185336 57185336 G A SLC43A3 Missense_Mutation p.L186F 0.20 deleterious(0.05) benign(0.344) TCGA-R2-A69V-01 11 62376235 62376235 C G EML3 Missense_Mutation p.Q324H 0.11 deleterious(0) probably_damaging(0.999) TCGA-R2-A69V-01 11 6291978 6291978 C T CCKBR Silent p.D252D 0.14 TCGA-R2-A69V-01 12 122212993 122212993 C G TMEM120B Missense_Mutation p.T288R 0.16 deleterious(0) probably_damaging(0.963) TCGA-R2-A69V-01 12 130649732 130649732 C G FZD10 3'UTR 0.05 TCGA-R2-A69V-01 12 46320695 46320695 C T SCAF11 Missense_Mutation p.R930K 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-R2-A69V-01 12 56473945 56473945 G A ERBB3 5'UTR 0.23 TCGA-R2-A69V-01 12 56473946 56473946 A T ERBB3 5'UTR 0.23 TCGA-R2-A69V-01 12 56743401 56743401 G C STAT2 Nonsense_Mutation p.S410* 0.06 TCGA-R2-A69V-01 12 58088581 58088581 T A OS9 Missense_Mutation p.Y71N 0.14 deleterious(0.01) possibly_damaging(0.813) TCGA-R2-A69V-01 12 95663916 95663916 G C VEZT Missense_Mutation p.R267T 0.11 deleterious(0.01) possibly_damaging(0.72) TCGA-R2-A69V-01 13 114325861 114325861 C T GRK1 Missense_Mutation p.P292L 0.09 tolerated(0.09) benign(0.366) TCGA-R2-A69V-01 13 28240167 28240167 G A POLR1D 3'UTR 0.09 TCGA-R2-A69V-01 13 32527401 32527401 T C EEF1DP3 RNA 0.21 TCGA-R2-A69V-01 14 22509278 22509278 T G TRAV20 Nonsense_Mutation p.Y72* 0.15 TCGA-R2-A69V-01 14 24792559 24792559 G A ADCY4 Silent p.I716I 0.16 TCGA-R2-A69V-01 14 27018905 27018905 G C NOVA1 Intron 0.21 TCGA-R2-A69V-01 14 90726515 90726515 G C PSMC1 Missense_Mutation p.K38N 0.12 tolerated(0.05) benign(0.004) TCGA-R2-A69V-01 14 95912341 95912341 C G SYNE3 Missense_Mutation p.E513Q 0.13 tolerated(0.07) possibly_damaging(0.608) TCGA-R2-A69V-01 15 101606863 101606863 C G LRRK1 Missense_Mutation p.I1929M 0.10 tolerated(0.31) benign(0.141) TCGA-R2-A69V-01 15 43235468 43235468 G T UBR1 3'UTR 0.11 TCGA-R2-A69V-01 15 43335480 43335480 T C UBR1 Silent p.E594E 0.10 TCGA-R2-A69V-01 15 66223260 66223260 A G MEGF11 Missense_Mutation p.C437R 0.12 deleterious(0) probably_damaging(0.994) TCGA-R2-A69V-01 15 76075301 76075301 C T RN7SL319P 5'Flank 0.16 TCGA-R2-A69V-01 15 78287807 78287807 G A TBC1D2B 3'UTR 0.14 TCGA-R2-A69V-01 15 79271195 79271195 C G RASGRF1 Intron 0.08 TCGA-R2-A69V-01 15 92987909 92987909 C A ST8SIA2 Missense_Mutation p.L198I 0.07 benign(0.003) TCGA-R2-A69V-01 16 15168706 15168706 C G RRN3 Missense_Mutation p.E291Q 0.10 tolerated(0.31) benign(0.214) TCGA-R2-A69V-01 16 28619853 28619853 G C SULT1A1 Missense_Mutation p.P74A 0.08 tolerated(0.63) possibly_damaging(0.607) TCGA-R2-A69V-01 16 70405827 70405827 G C DDX19A Splice_Site p.X459_splice 0.06 TCGA-R2-A69V-01 17 16001751 16001751 G C NCOR1 Nonsense_Mutation p.S917* 0.07 TCGA-R2-A69V-01 17 43322670 43322670 G C FMNL1 Missense_Mutation p.E927Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-R2-A69V-01 17 4436544 4436544 C G SPNS2 Missense_Mutation p.I365M 0.12 deleterious(0.01) probably_damaging(0.959) TCGA-R2-A69V-01 17 48538695 48538695 C G ACSF2 Silent p.L139L 0.16 TCGA-R2-A69V-01 17 56620839 56620839 G C C17orf47 Missense_Mutation p.Q237E 0.16 tolerated(0.2) benign(0.018) TCGA-R2-A69V-01 17 68172982 68172982 A C KCNJ2 3'UTR 0.21 TCGA-R2-A69V-01 17 78086486 78086486 G T GAA Nonsense_Mutation p.E622* 0.18 TCGA-R2-A69V-01 18 29645950 29645950 C G RNF125 Missense_Mutation p.T197S 0.10 tolerated(0.27) benign(0.288) TCGA-R2-A69V-01 19 10753987 10753987 G A SLC44A2 Missense_Mutation p.E683K 0.14 deleterious(0.02) probably_damaging(0.973) TCGA-R2-A69V-01 19 11796725 11796725 C G ZNF833P RNA 0.08 TCGA-R2-A69V-01 19 17328284 17328284 G C USE1 Intron 0.07 TCGA-R2-A69V-01 19 17328285 17328285 A C USE1 Intron 0.07 TCGA-R2-A69V-01 19 19656052 19656052 G A CILP2 Missense_Mutation p.A900T 0.14 tolerated(0.09) benign(0.069) TCGA-R2-A69V-01 19 33359429 33359429 A G SLC7A9 Silent p.T4T 0.13 TCGA-R2-A69V-01 19 44351423 44351423 C G ZNF283 Missense_Mutation p.Q224E 0.13 tolerated(0.52) benign(0.022) TCGA-R2-A69V-01 19 47880373 47880373 G C DHX34 Missense_Mutation p.M872I 0.13 tolerated(0.21) benign(0.039) TCGA-R2-A69V-01 19 50365127 50365127 G A PNKP Silent p.G400G 0.07 TCGA-R2-A69V-01 19 56243754 56243754 C T NLRP9 Silent p.V481V 0.07 TCGA-R2-A69V-01 19 651748 651748 A C RNF126 Silent p.A102A 0.17 TCGA-R2-A69V-01 19 8808989 8808989 G C ACTL9 Silent p.G21G 0.11 TCGA-R2-A69V-01 1 101705515 101705515 C T S1PR1 Silent p.I325I 0.17 TCGA-R2-A69V-01 1 1026956 1026956 G T C1orf159 Intron 0.12 TCGA-R2-A69V-01 1 104068737 104068737 G A RNPC3 Silent p.T15T 0.07 TCGA-R2-A69V-01 1 145473903 145473903 C G ANKRD34A Missense_Mutation p.A192G 0.14 tolerated(0.07) benign(0) TCGA-R2-A69V-01 1 152484450 152484450 C G LCE5A 3'UTR 0.12 TCGA-R2-A69V-01 1 155160853 155160853 A C MUC1 Missense_Mutation p.L225R 0.07 tolerated(0.36) probably_damaging(0.979) TCGA-R2-A69V-01 1 156641897 156641897 C G NES Missense_Mutation p.E695Q 0.10 deleterious(0) possibly_damaging(0.541) TCGA-R2-A69V-01 1 158325757 158325757 C T CD1E Nonsense_Mutation p.R256* 0.10 TCGA-R2-A69V-01 1 160341827 160341827 C G NHLH1 3'UTR 0.11 TCGA-R2-A69V-01 1 17548870 17548870 A G PADI1 Missense_Mutation p.K60E 0.11 tolerated(0.25) benign(0.001) TCGA-R2-A69V-01 1 196716354 196716354 C T CFH Missense_Mutation p.R1203W 0.07 tolerated(0.2) benign(0.001) TCGA-R2-A69V-01 1 20645121 20645121 G T VWA5B1 Missense_Mutation p.A250S 0.13 tolerated(0.24) benign(0.056) TCGA-R2-A69V-01 1 220284144 220284144 G A IARS2 Silent p.Q448Q 0.07 TCGA-R2-A69V-01 1 235275313 235275313 C G TOMM20 3'UTR 0.08 TCGA-R2-A69V-01 1 32138051 32138051 C G COL16A1 Missense_Mutation p.G1024A 0.12 unknown(0) TCGA-R2-A69V-01 1 40230595 40230595 G C BMP8B Intron 0.07 TCGA-R2-A69V-01 1 52498453 52498453 C A KTI12 Silent p.S327S 0.08 TCGA-R2-A69V-01 1 52959314 52959314 C G ZCCHC11 Silent p.L429L 0.08 TCGA-R2-A69V-01 1 53569153 53569153 G A SLC1A7 Nonsense_Mutation p.Q188* 0.07 TCGA-R2-A69V-01 1 54665842 54665842 C T MRPL37 5'UTR 0.09 TCGA-R2-A69V-01 1 6610537 6610537 G C NOL9 Missense_Mutation p.L179V 0.05 tolerated(0.91) benign(0.002) TCGA-R2-A69V-01 1 75218039 75218039 G C TYW3 Missense_Mutation p.E164Q 0.08 tolerated(0.06) benign(0.159) TCGA-R2-A69V-01 1 93621596 93621596 G C TMED5 Intron 0.08 TCGA-R2-A69V-01 20 1210533 1210533 G C RAD21L1 Missense_Mutation p.A52P 0.08 deleterious(0) probably_damaging(1) TCGA-R2-A69V-01 20 39317272 39317272 G A MAFB Silent p.F73F 0.09 TCGA-R2-A69V-01 20 57036492 57036492 G C APCDD1L Missense_Mutation p.S287W 0.17 deleterious(0.03) probably_damaging(0.915) TCGA-R2-A69V-01 21 31864193 31864193 C G KRTAP19-3 Missense_Mutation p.G28A 0.07 tolerated_low_confidence(0.46) unknown(0) TCGA-R2-A69V-01 22 39410286 39410286 C G APOBEC3C 5'UTR 0.08 TCGA-R2-A69V-01 22 40074041 40074041 C G CACNA1I Missense_Mutation p.F1661L 0.08 deleterious(0) benign(0.418) TCGA-R2-A69V-01 2 100722591 100722591 G C AFF3 5'Flank 0.09 TCGA-R2-A69V-01 2 121107209 121107209 A G INHBB Missense_Mutation p.Y328C 0.14 deleterious(0) probably_damaging(0.968) TCGA-R2-A69V-01 2 135756518 135756518 G A MAP3K19 Missense_Mutation p.H122Y 0.11 tolerated(0.09) benign(0.031) TCGA-R2-A69V-01 2 173427514 173427514 G A PDK1 Intron 0.08 TCGA-R2-A69V-01 2 175462417 175462417 G C WIPF1 Intron 0.21 TCGA-R2-A69V-01 2 202141606 202141606 C G CASP8 Missense_Mutation p.I298M 0.09 deleterious(0.01) possibly_damaging(0.809) TCGA-R2-A69V-01 2 27731095 27731095 G C GCKR Missense_Mutation p.E467Q 0.12 tolerated(0.07) benign(0.032) TCGA-R2-A69V-01 2 33952432 33952432 G A AC009499.1 Intron 0.08 TCGA-R2-A69V-01 2 71188737 71188737 G C ATP6V1B1 Missense_Mutation p.E233D 0.05 tolerated(0.12) benign(0.054) TCGA-R2-A69V-01 3 107642545 107642545 T C LINC00636 RNA 0.20 TCGA-R2-A69V-01 3 126723998 126723998 C T PLXNA1 Silent p.F603F 0.18 TCGA-R2-A69V-01 3 171320831 171320831 C G PLD1 3'UTR 0.10 TCGA-R2-A69V-01 3 178927432 178927432 G A PIK3CA Missense_Mutation p.A399T 0.13 tolerated(0.34) benign(0.053) TCGA-R2-A69V-01 3 185167768 185167768 G A MAP3K13 Missense_Mutation p.G364D 0.08 deleterious(0) probably_damaging(0.999) TCGA-R2-A69V-01 3 189582097 189582097 C T TP63 Missense_Mutation p.P219L 0.14 deleterious(0) probably_damaging(1) TCGA-R2-A69V-01 3 49572784 49572784 G C DAG1 3'UTR 0.10 TCGA-R2-A69V-01 3 5261479 5261479 G C EDEM1 3'UTR 0.13 TCGA-R2-A69V-01 3 53226700 53226700 T C PRKCD 3'UTR 0.13 TCGA-R2-A69V-01 4 107956608 107956608 A G DKK2 Silent p.P47P 0.11 TCGA-R2-A69V-01 4 151203686 151203686 G C LRBA Silent p.V2755V 0.22 TCGA-R2-A69V-01 4 6042435 6042435 G A JAKMIP1 Silent p.F702F 0.10 TCGA-R2-A69V-01 4 69692182 69692182 C A UGT2B10 Missense_Mutation p.L352M 0.13 deleterious(0.03) probably_damaging(0.955) TCGA-R2-A69V-01 5 112228015 112228015 G T ZRSR1 Missense_Mutation p.D227Y 0.14 deleterious(0) probably_damaging(0.99) TCGA-R2-A69V-01 5 131893139 131893139 A G RAD50 Silent p.G41G 0.17 TCGA-R2-A69V-01 5 140772400 140772400 G A PCDHGA8 Missense_Mutation p.R7H 0.14 tolerated_low_confidence(0.57) benign(0.004) TCGA-R2-A69V-01 5 159344638 159344638 G A ADRA1B Missense_Mutation p.M242I 0.09 tolerated(0.06) benign(0.434) TCGA-R2-A69V-01 5 179744046 179744046 G A GFPT2 Missense_Mutation p.A324V 0.17 deleterious(0.01) benign(0.048) TCGA-R2-A69V-01 5 61786023 61786023 C G IPO11 Missense_Mutation p.P520R 0.14 tolerated(0.51) benign(0.002) TCGA-R2-A69V-01 5 6599563 6599563 G A NSUN2 3'UTR 0.08 TCGA-R2-A69V-01 6 149997435 149997435 A C LATS1 Silent p.P948P 0.09 TCGA-R2-A69V-01 6 150238164 150238164 C A RAET1G Missense_Mutation p.V297L 0.19 deleterious_low_confidence(0) benign(0.167) TCGA-R2-A69V-01 6 168459811 168459811 A G FRMD1 Missense_Mutation p.V467A 0.09 tolerated(0.07) benign(0.001) TCGA-R2-A69V-01 6 170880546 170880546 C G TBP Silent p.P298P 0.14 TCGA-R2-A69V-01 6 25689739 25689739 A G SCGN Silent p.K204K 0.13 TCGA-R2-A69V-01 6 27279745 27279745 T C POM121L2 Missense_Mutation p.T69A 0.13 tolerated(0.64) benign(0.003) TCGA-R2-A69V-01 6 35773528 35773528 G C LHFPL5 Silent p.V27V 0.17 TCGA-R2-A69V-01 6 44199824 44199824 C T SLC29A1 Silent p.I318I 0.14 TCGA-R2-A69V-01 6 48036318 48036318 C T PTCHD4 Missense_Mutation p.R25K 0.10 tolerated(0.13) benign(0.028) TCGA-R2-A69V-01 6 49518869 49518869 G C C6orf141 Missense_Mutation p.E122Q 0.15 tolerated(0.22) benign(0.041) TCGA-R2-A69V-01 6 7895362 7895362 T G TXNDC5 Missense_Mutation p.N198T 0.38 tolerated(0.58) possibly_damaging(0.589) TCGA-R2-A69V-01 7 100365528 100365528 C T ZAN Silent p.L1645L 0.11 TCGA-R2-A69V-01 7 107314773 107314773 C T SLC26A4 Silent p.L194L 0.13 TCGA-R2-A69V-01 7 148964012 148964012 A G ZNF783 Missense_Mutation p.N175D 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-R2-A69V-01 7 2979539 2979539 C G CARD11 Missense_Mutation p.L236F 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-R2-A69V-01 7 43506070 43506070 C T HECW1 Missense_Mutation p.S939F 0.08 deleterious(0.03) possibly_damaging(0.707) TCGA-R2-A69V-01 7 98547391 98547391 C T TRRAP Missense_Mutation p.R1681C 0.12 possibly_damaging(0.838) TCGA-R2-A69V-01 8 145095596 145095596 C A SPATC1 Silent p.A298A 0.06 TCGA-R2-A69V-01 8 146032880 146032880 C G ZNF517 Silent p.L193L 0.06 TCGA-R2-A69V-01 8 27454843 27454843 A T CLU 3'UTR 0.17 TCGA-R2-A69V-01 8 63973681 63973681 G C TTPA 3'UTR 0.32 TCGA-R2-A69V-01 8 71485783 71485783 A G AC120194.1 5'UTR 0.24 TCGA-R2-A69V-01 8 71646350 71646350 T A XKR9 Silent p.L271L 0.13 TCGA-R2-A69V-01 8 82357088 82357088 T A PMP2 Missense_Mutation p.E70D 0.12 deleterious(0.01) possibly_damaging(0.662) TCGA-R2-A69V-01 9 124079435 124079435 G C GSN Silent p.L326L 0.12 TCGA-R2-A69V-01 9 134135324 134135324 G A FAM78A 3'UTR 0.06 TCGA-R2-A69V-01 9 136343502 136343502 G A SLC2A6 Silent p.F43F 0.15 TCGA-R2-A69V-01 9 140807695 140807695 G T CACNA1B Missense_Mutation p.R198S 0.14 deleterious(0) benign(0.108) TCGA-R2-A69V-01 9 21206637 21206637 G C IFNA10 Missense_Mutation p.L154V 0.12 deleterious(0) probably_damaging(1) TCGA-R2-A69V-01 9 35649944 35649944 G C SIT1 Silent p.P164P 0.10 TCGA-R2-A69V-01 9 84606953 84606953 G A SPATA31D1 Missense_Mutation p.R523H 0.08 tolerated(0.41) benign(0.003) TCGA-R2-A69V-01 9 95418824 95418824 C T IPPK Missense_Mutation p.E47K 0.11 tolerated(0.25) possibly_damaging(0.625) TCGA-R2-A69V-01 9 99798947 99798947 G A CTSV Missense_Mutation p.S160L 0.23 deleterious(0.02) probably_damaging(0.952) TCGA-R2-A69V-01 X 100169463 100169463 A C XKRX Missense_Mutation p.L405W 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-R2-A69V-01 X 105876456 105876456 C A CXorf57 Missense_Mutation p.P426Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-R2-A69V-01 X 129543342 129543342 C T RBMX2 Silent p.D95D 0.10 TCGA-R2-A69V-01 X 153133907 153133907 G C L1CAM Missense_Mutation p.T518S 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-R2-A69V-01 X 24006341 24006341 G A KLHL15 Silent p.F504F 0.14 TCGA-R2-A69V-01 X 2854796 2854796 C G ARSE Missense_Mutation p.W466C 0.09 deleterious(0) probably_damaging(0.994) TCGA-R2-A69V-01 X 47045755 47045755 G A RBM10 Missense_Mutation p.R879H 0.17 deleterious(0) probably_damaging(0.998) TCGA-R2-A69V-01 X 53262603 53262603 G - IQSEC2 3'UTR 0.11 TCGA-R2-A69V-01 X 85211314 85211314 A G CHM Missense_Mutation p.V337A 0.44 deleterious(0) possibly_damaging(0.544) TCGA-RA-A741-01 10 95400710 95400710 G A PDE6C Missense_Mutation p.E591K 0.10 deleterious(0) probably_damaging(0.95) TCGA-RA-A741-01 11 5686913 5686913 C G TRIM5 Splice_Site p.X290_splice 0.16 TCGA-RA-A741-01 11 65273653 65273653 G A MALAT1 RNA 0.48 TCGA-RA-A741-01 11 6806957 6806957 C T OR2AG1 Missense_Mutation p.S230L 0.06 deleterious(0.02) probably_damaging(0.955) TCGA-RA-A741-01 11 75672544 75672544 G A UVRAG Missense_Mutation p.G217E 0.17 deleterious(0.04) possibly_damaging(0.873) TCGA-RA-A741-01 11 93431029 93431029 G A KIAA1731 Missense_Mutation p.R984K 0.15 tolerated(0.51) benign(0.002) TCGA-RA-A741-01 12 113664578 113664578 G C TPCN1 Missense_Mutation p.S46T 0.07 tolerated_low_confidence(0.07) benign(0.016) TCGA-RA-A741-01 12 12274052 12274052 G A LRP6 3'UTR 0.16 TCGA-RA-A741-01 12 124118244 124118244 C A EIF2B1 5'UTR 0.43 TCGA-RA-A741-01 12 6993598 6993598 G A RPL13P5 RNA 0.09 TCGA-RA-A741-01 12 76772318 76772318 G A OSBPL8 Missense_Mutation p.S548F 0.12 deleterious(0) probably_damaging(0.998) TCGA-RA-A741-01 15 91026823 91026823 C T IQGAP1 Silent p.F1262F 0.09 TCGA-RA-A741-01 16 2225135 2225135 C T TRAF7 Missense_Mutation p.A457V 0.11 tolerated(0.07) possibly_damaging(0.627) TCGA-RA-A741-01 16 46836598 46836599 - T C16orf87 3'UTR 0.13 TCGA-RA-A741-01 16 67759896 67759896 C T RANBP10 3'UTR 0.06 TCGA-RA-A741-01 17 19186471 19186471 C T EPN2 Silent p.I13I 0.27 TCGA-RA-A741-01 17 21826336 21826336 C T FAM27L RNA 0.17 TCGA-RA-A741-01 17 30697406 30697406 A G ZNF207 3'UTR 0.21 TCGA-RA-A741-01 17 41522254 41522254 G C MIR2117 RNA 0.10 TCGA-RA-A741-01 19 44012071 44012071 G C ETHE1 Intron 0.15 TCGA-RA-A741-01 19 54515286 54515286 C T CACNG6 Missense_Mutation p.P209L 0.14 tolerated(0.21) benign(0.01) TCGA-RA-A741-01 19 9090910 9090910 G A MUC16 Missense_Mutation p.S302L 0.18 unknown(0) TCGA-RA-A741-01 1 110023842 110023842 G C SYPL2 3'UTR 0.14 TCGA-RA-A741-01 1 152127693 152127693 C T RPTN Missense_Mutation p.G628R 0.07 tolerated(0.06) benign(0.367) TCGA-RA-A741-01 1 154223747 154223747 C T UBAP2L Nonsense_Mutation p.Q482* 0.14 TCGA-RA-A741-01 1 154224054 154224054 C T UBAP2L Missense_Mutation p.S530F 0.08 deleterious(0.01) unknown(0) TCGA-RA-A741-01 1 179815952 179815952 G C TOR1AIP2 Missense_Mutation p.L223V 0.08 tolerated(0.26) benign(0.01) TCGA-RA-A741-01 1 192989555 192989556 - TA UCHL5 Intron 0.18 TCGA-RA-A741-01 1 196801222 196801222 C A CFHR1 3'UTR 0.13 TCGA-RA-A741-01 1 211919615 211919615 T G LPGAT1 3'UTR 0.30 TCGA-RA-A741-01 1 237819136 237819136 C T RYR2 Missense_Mutation p.L2661F 0.38 probably_damaging(0.989) TCGA-RA-A741-01 1 36646047 36646047 C G MAP7D1 3'UTR 0.07 TCGA-RA-A741-01 20 35627102 35627102 G A RBL1 3'UTR 0.05 TCGA-RA-A741-01 20 57766220 57766220 C - ZNF831 Frame_Shift_Del p.T52Lfs*4 0.30 TCGA-RA-A741-01 20 6057200 6057200 C T FERMT1 3'UTR 0.19 TCGA-RA-A741-01 2 179528588 179528588 G C TTN Missense_Mutation p.P12136A 0.11 TCGA-RA-A741-01 2 60686967 60686967 T C BCL11A 3'UTR 0.47 TCGA-RA-A741-01 2 90249237 90249237 G T IGKV1D-43 Missense_Mutation p.A65S 0.25 tolerated(0.35) benign(0.08) TCGA-RA-A741-01 2 99936058 99936058 C T TXNDC9 3'UTR 0.08 TCGA-RA-A741-01 3 183701605 183701605 C T ABCC5 Intron 0.36 TCGA-RA-A741-01 3 183907661 183907661 C T ABCF3 Missense_Mutation p.R445C 0.09 deleterious(0) probably_damaging(1) TCGA-RA-A741-01 3 195507119 195507119 G A MUC4 Missense_Mutation p.P3778S 0.20 possibly_damaging(0.65) TCGA-RA-A741-01 3 195508223 195508223 G A MUC4 Missense_Mutation p.P3410S 0.12 benign(0) TCGA-RA-A741-01 3 195508226 195508226 G A MUC4 Missense_Mutation p.L3409F 0.11 possibly_damaging(0.598) TCGA-RA-A741-01 3 195512956 195512956 G T MUC4 Nonsense_Mutation p.S1832* 0.13 TCGA-RA-A741-01 3 195515246 195515246 G A MUC4 Missense_Mutation p.H1069Y 0.10 unknown(0) TCGA-RA-A741-01 3 195515279 195515279 G A MUC4 Missense_Mutation p.P1058S 0.06 unknown(0) TCGA-RA-A741-01 3 195515821 195515821 G A MUC4 Missense_Mutation p.S877F 0.21 unknown(0) TCGA-RA-A741-01 3 195517135 195517135 G A MUC4 Missense_Mutation p.S439F 0.19 unknown(0) TCGA-RA-A741-01 3 195517631 195517631 G C MUC4 Missense_Mutation p.L274V 0.18 unknown(0) TCGA-RA-A741-01 3 195518150 195518150 G C MUC4 Missense_Mutation p.L101V 0.30 unknown(0) TCGA-RA-A741-01 3 77147203 77147203 G T ROBO2 Missense_Mutation p.V50L 0.20 deleterious(0) unknown(0) TCGA-RA-A741-01 4 115544657 115544657 C A UGT8 Silent p.V207V 0.26 TCGA-RA-A741-01 4 15995625 15995625 A T PROM1 Missense_Mutation p.H584Q 0.17 tolerated(0.33) benign(0.009) TCGA-RA-A741-01 4 44684348 44684348 C T GUF1 Intron 0.16 TCGA-RA-A741-01 5 135188500 135188500 G A SLC25A48 Silent p.P137P 0.08 TCGA-RA-A741-01 6 21597316 21597319 TCTT - SOX4 3'UTR 0.27 TCGA-RA-A741-01 6 30916512 30916512 C T DPCR1 Missense_Mutation p.R91C 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-RA-A741-01 7 100205756 100205756 C A PCOLCE 3'UTR 0.12 TCGA-RA-A741-01 7 146829491 146829491 G T CNTNAP2 Missense_Mutation p.S413I 0.10 tolerated(0.11) benign(0.081) TCGA-RA-A741-01 7 71250879 71250879 G A CALN1 3'UTR 0.19 TCGA-RA-A741-01 9 97062730 97062730 G A ZNF169 Missense_Mutation p.R297Q 0.14 tolerated(0.18) possibly_damaging(0.767) TCGA-RA-A741-01 X 12701667 12701667 A G FRMPD4 Silent p.V178V 0.07 TCGA-RA-A741-01 X 12809609 12809609 G A PRPS2 5'UTR 0.16 TCGA-RA-A741-01 X 141290914 141290914 C T MAGEC2 Missense_Mutation p.R287Q 0.21 tolerated(0.2) benign(0.053) TCGA-RA-A741-01 X 151336634 151336634 G A GABRA3 3'UTR 0.14 TCGA-RA-A741-01 X 48419230 48419230 T G TBC1D25 Missense_Mutation p.M645R 0.23 deleterious(0) possibly_damaging(0.88) TCGA-RA-A741-01 X 54949050 54949050 C G TRO Missense_Mutation p.P29A 0.28 deleterious_low_confidence(0) unknown(0) TCGA-RA-A741-01 X 74742773 74742783 GACAATAACGA - ZDHHC15 Frame_Shift_Del p.L26Pfs*13 0.08 TCGA-UC-A7PD-01 10 118404588 118404588 C T PNLIPRP2 Nonsense_Mutation p.Q463* 0.41 TCGA-UC-A7PD-01 10 23295873 23295873 C G ARMC3 Missense_Mutation p.L598V 0.28 deleterious(0.04) benign(0.001) TCGA-UC-A7PD-01 10 27963822 27963822 C G MKX 3'UTR 0.07 TCGA-UC-A7PD-01 10 88728156 88728156 G A ADIRF 5'UTR 0.39 TCGA-UC-A7PD-01 11 100933341 100933341 C G PGR Missense_Mutation p.L683F 0.03 tolerated(0.57) benign(0.004) TCGA-UC-A7PD-01 11 120355773 120355773 C T ARHGEF12 Intron 0.32 TCGA-UC-A7PD-01 11 124489214 124489214 G A PANX3 Missense_Mutation p.E188K 0.57 tolerated(0.93) probably_damaging(0.996) TCGA-UC-A7PD-01 12 118473110 118473110 C T WSB2 Missense_Mutation p.A285T 0.07 tolerated(0.59) benign(0.002) TCGA-UC-A7PD-01 13 36348232 36348232 C G DCLK1 3'UTR 0.36 TCGA-UC-A7PD-01 14 34420002 34420002 G C EGLN3 5'UTR 0.35 TCGA-UC-A7PD-01 16 23583435 23583435 G A UBFD1 3'UTR 0.26 TCGA-UC-A7PD-01 16 27666046 27666046 C G KIAA0556 Intron 0.27 TCGA-UC-A7PD-01 16 28856133 28856133 C T TUFM Silent p.Q190Q 0.07 TCGA-UC-A7PD-01 16 58622718 58622718 G C CNOT1 Silent p.G65G 0.47 TCGA-UC-A7PD-01 16 69731404 69731404 C G NFAT5 3'UTR 0.16 TCGA-UC-A7PD-01 16 743550 743550 C T FBXL16 3'UTR 0.42 TCGA-UC-A7PD-01 17 18415611 18415611 A C USP32P2 RNA 0.19 TCGA-UC-A7PD-01 17 65888007 65888007 C G BPTF Missense_Mutation p.P638A 0.29 benign(0.025) TCGA-UC-A7PD-01 17 75186956 75186956 C G SEC14L1 Missense_Mutation p.F45L 0.25 tolerated(0.63) benign(0.012) TCGA-UC-A7PD-01 17 9549282 9549282 C T USP43 Silent p.F111F 0.39 TCGA-UC-A7PD-01 19 419012 419012 G A SHC2 Silent p.I555I 0.07 TCGA-UC-A7PD-01 19 4445410 4445410 G A UBXN6 3'UTR 0.28 TCGA-UC-A7PD-01 19 49656716 49656716 C A HRC Missense_Mutation p.R593S 0.32 tolerated(0.56) benign(0.001) TCGA-UC-A7PD-01 19 49657150 49657150 C G HRC Missense_Mutation p.E449Q 0.23 tolerated(0.3) benign(0.201) TCGA-UC-A7PD-01 1 109707183 109707183 G C KIAA1324 Missense_Mutation p.E113Q 0.33 tolerated(0.2) benign(0.255) TCGA-UC-A7PD-01 1 1255873 1255873 C T CPSF3L Missense_Mutation p.G61S 0.38 tolerated(0.1) probably_damaging(0.927) TCGA-UC-A7PD-01 1 1310233 1310233 G A AURKAIP1 5'UTR 0.36 TCGA-UC-A7PD-01 1 16262320 16262320 G C SPEN Silent p.V3195V 0.23 TCGA-UC-A7PD-01 1 16262663 16262663 G A SPEN Missense_Mutation p.D3310N 0.34 probably_damaging(0.997) TCGA-UC-A7PD-01 1 228363051 228363051 C T IBA57 Missense_Mutation p.S303L 0.23 deleterious(0.05) benign(0.117) TCGA-UC-A7PD-01 1 23640111 23640111 C T HNRNPR Missense_Mutation p.E371K 0.29 deleterious(0.02) possibly_damaging(0.758) TCGA-UC-A7PD-01 1 237167695 237167695 G A MT1HL1 5'UTR 0.07 TCGA-UC-A7PD-01 1 67861460 67861460 G A IL12RB2 Silent p.E759E 0.21 TCGA-UC-A7PD-01 20 62585129 62585129 C T AL118506.1 Silent p.C41C 0.25 TCGA-UC-A7PD-01 21 30357145 30357145 C T LTN1 Missense_Mutation p.M194I 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-UC-A7PD-01 21 34401382 34401382 G C OLIG2 3'UTR 0.22 TCGA-UC-A7PD-01 21 43325861 43325861 G A C2CD2 Silent p.V468V 0.40 TCGA-UC-A7PD-01 21 43325882 43325882 G A C2CD2 Silent p.I461I 0.39 TCGA-UC-A7PD-01 21 43325895 43325895 G A C2CD2 Missense_Mutation p.S457F 0.46 deleterious(0) probably_damaging(0.959) TCGA-UC-A7PD-01 22 50704624 50704624 G A MAPK11 Intron 0.36 TCGA-UC-A7PD-01 2 120980594 120980594 G A TMEM185B 5'UTR 0.28 TCGA-UC-A7PD-01 2 163215571 163215571 C G GCA Missense_Mutation p.Q158E 0.10 deleterious(0.04) benign(0.024) TCGA-UC-A7PD-01 2 234602059 234602059 A T UGT1A6 Missense_Mutation p.N137Y 0.43 deleterious(0.01) benign(0.232) TCGA-UC-A7PD-01 2 24991837 24991837 C G NCOA1 3'UTR 0.57 TCGA-UC-A7PD-01 2 48725635 48725635 C T PPP1R21 Nonsense_Mutation p.Q566* 0.16 TCGA-UC-A7PD-01 2 54128589 54128589 A C PSME4 Silent p.L1061L 0.05 TCGA-UC-A7PD-01 3 49019130 49019130 A T ARIH2 Missense_Mutation p.Y432F 0.08 deleterious(0.03) benign(0.32) TCGA-UC-A7PD-01 3 58849304 58849304 C T C3orf67 Missense_Mutation p.G400S 0.32 tolerated(0.06) benign(0.18) TCGA-UC-A7PD-01 4 121675759 121675759 T C PRDM5 Silent p.K524K 0.08 TCGA-UC-A7PD-01 4 134111530 134111530 G C PCDH10 3'UTR 0.26 TCGA-UC-A7PD-01 5 129037232 129037232 C T ADAMTS19 Missense_Mutation p.R1030C 0.10 tolerated(0.06) possibly_damaging(0.67) TCGA-UC-A7PD-01 5 137222904 137222904 C T MYOT Missense_Mutation p.R443C 0.23 deleterious(0) possibly_damaging(0.493) TCGA-UC-A7PD-01 5 23526850 23526850 C G PRDM9 Silent p.L551L 0.26 TCGA-UC-A7PD-01 7 93090174 93090174 C T CALCR Missense_Mutation p.V237I 0.06 tolerated(0.33) benign(0.05) TCGA-UC-A7PD-01 8 74939045 74939045 C T LY96 Missense_Mutation p.S118L 0.32 tolerated(0.09) benign(0.102) TCGA-UC-A7PD-01 8 89050694 89050694 G T MMP16 3'UTR 0.35 TCGA-UC-A7PD-01 9 131708402 131708402 A T DOLK Missense_Mutation p.L394H 0.45 deleterious(0.02) probably_damaging(0.992) TCGA-UC-A7PD-01 9 135102404 135102404 C T NTNG2 Silent p.N342N 0.31 TCGA-UC-A7PD-01 9 140901276 140901276 G A CACNA1B Missense_Mutation p.G678S 0.15 deleterious(0.01) benign(0.04) TCGA-UC-A7PD-01 9 84532425 84532425 G C SPATA31D5P RNA 0.37 TCGA-UC-A7PD-01 9 8486257 8486257 G A PTPRD Nonsense_Mutation p.Q854* 0.21 TCGA-UC-A7PD-01 X 48772318 48772318 C G PIM2 Missense_Mutation p.E192Q 0.31 tolerated(0.07) benign(0.043) TCGA-UC-A7PF-01 10 100249925 100249925 C T HPSE2 Missense_Mutation p.R450H 0.15 deleterious(0.04) benign(0.01) TCGA-UC-A7PF-01 10 102589196 102589196 G A PAX2 3'UTR 0.26 TCGA-UC-A7PF-01 10 102753198 102753198 G A C10orf2 Silent p.Q662Q 0.25 TCGA-UC-A7PF-01 10 102780424 102780424 C A PDZD7 Silent p.R293R 0.33 TCGA-UC-A7PF-01 10 103826424 103826424 C T HPS6 Missense_Mutation p.S398L 0.31 tolerated(0.09) benign(0.104) TCGA-UC-A7PF-01 10 104184490 104184490 G A CUEDC2 Missense_Mutation p.S45L 0.34 deleterious(0.02) probably_damaging(0.984) TCGA-UC-A7PF-01 10 105007517 105007517 G A RPEL1 3'UTR 0.15 TCGA-UC-A7PF-01 10 122664255 122664255 C T WDR11 Missense_Mutation p.S1042L 0.27 tolerated(0.08) probably_damaging(0.987) TCGA-UC-A7PF-01 10 125528068 125528068 C T CPXM2 Missense_Mutation p.D425N 0.22 deleterious(0) probably_damaging(1) TCGA-UC-A7PF-01 10 128934055 128934055 G T FAM196A 3'UTR 0.23 TCGA-UC-A7PF-01 10 134596378 134596378 G C INPP5A 3'UTR 0.25 TCGA-UC-A7PF-01 10 134627759 134627759 C T TTC40 Splice_Site p.X2429_splice 0.38 TCGA-UC-A7PF-01 10 16975228 16975228 C T CUBN Silent p.P1994P 0.44 TCGA-UC-A7PF-01 10 47769385 47769385 C A AL603965.1 Nonsense_Mutation p.S69* 0.19 TCGA-UC-A7PF-01 10 48373523 48373523 C G ZNF488 3'UTR 0.17 TCGA-UC-A7PF-01 10 52005193 52005193 G A ASAH2 Missense_Mutation p.S50L 0.26 tolerated_low_confidence(0.29) benign(0) TCGA-UC-A7PF-01 10 55582403 55582403 C G PCDH15 Missense_Mutation p.E1697Q 0.26 deleterious_low_confidence(0.02) benign(0.084) TCGA-UC-A7PF-01 10 64429980 64429980 C G ZNF365 Missense_Mutation p.I436M 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.506) TCGA-UC-A7PF-01 10 69565485 69565485 G A DNAJC12 Missense_Mutation p.H120Y 0.27 tolerated(1) benign(0.001) TCGA-UC-A7PF-01 10 74695398 74695398 C G PLA2G12B Missense_Mutation p.E189Q 0.16 tolerated(0.43) possibly_damaging(0.728) TCGA-UC-A7PF-01 10 74856578 74856578 C T P4HA1 5'UTR 0.18 TCGA-UC-A7PF-01 10 75071636 75071636 G C TTC18 Missense_Mutation p.P444A 0.31 tolerated(0.72) benign(0.143) TCGA-UC-A7PF-01 10 75255549 75255549 C - PPP3CB Intron 0.19 TCGA-UC-A7PF-01 10 82126684 82126684 C T DYDC2 Missense_Mutation p.P185S 0.35 tolerated_low_confidence(0.19) benign(0.021) TCGA-UC-A7PF-01 10 85970835 85970835 G A CDHR1 Missense_Mutation p.D467N 0.25 deleterious(0) probably_damaging(1) TCGA-UC-A7PF-01 10 88703291 88703291 G A MMRN2 Missense_Mutation p.S417F 0.20 tolerated(0.05) benign(0.146) TCGA-UC-A7PF-01 10 89622151 89622151 G A KLLN Silent p.L32L 0.30 TCGA-UC-A7PF-01 10 96025689 96025689 G C PLCE1 Missense_Mutation p.E1419Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PF-01 10 97684091 97684091 C G C10orf131 Missense_Mutation p.Q32E 0.16 tolerated(0.06) benign(0) TCGA-UC-A7PF-01 11 1008096 1008096 C G AP2A2 Missense_Mutation p.S794C 0.20 deleterious(0.03) benign(0.007) TCGA-UC-A7PF-01 11 107978025 107978025 G A CUL5 3'UTR 0.62 TCGA-UC-A7PF-01 11 108044204 108044204 C G NPAT Missense_Mutation p.D503H 0.23 tolerated(0.12) benign(0.008) TCGA-UC-A7PF-01 11 113148183 113148183 G A NCAM1 3'Flank 0.50 TCGA-UC-A7PF-01 11 118247314 118247314 C T UBE4A Silent p.I499I 0.47 TCGA-UC-A7PF-01 11 11985984 11985984 C A DKK3 3'UTR 0.16 TCGA-UC-A7PF-01 11 122680574 122680574 G C UBASH3B Missense_Mutation p.E644Q 0.47 tolerated(0.14) benign(0.426) TCGA-UC-A7PF-01 11 124767619 124767619 C T ROBO4 Intron 0.35 TCGA-UC-A7PF-01 11 1492613 1492613 G A MOB2 Silent p.V134V 0.29 TCGA-UC-A7PF-01 11 1575705 1575705 C A DUSP8 3'UTR 0.18 TCGA-UC-A7PF-01 11 18485562 18485562 G A LDHAL6A Missense_Mutation p.E61K 0.31 deleterious(0.03) probably_damaging(0.994) TCGA-UC-A7PF-01 11 2150797 2150797 C T IGF2 3'Flank 0.23 TCGA-UC-A7PF-01 11 2151729 2151729 C G IGF2 3'Flank 0.33 TCGA-UC-A7PF-01 11 22400632 22400632 C G SLC17A6 3'UTR 0.10 TCGA-UC-A7PF-01 11 31131824 31131824 C T DCDC1 Missense_Mutation p.D524N 0.24 tolerated(0.82) benign(0.078) TCGA-UC-A7PF-01 11 32697502 32697502 C G CCDC73 Missense_Mutation p.E165D 0.16 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PF-01 11 33682526 33682526 G A KIAA1549L Missense_Mutation p.G1745E 0.27 deleterious(0.05) benign(0.382) TCGA-UC-A7PF-01 11 4142936 4142936 G T RRM1 Missense_Mutation p.D327Y 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UC-A7PF-01 11 4843349 4843349 C T OR51F2 Missense_Mutation p.S245L 0.28 tolerated(0.15) benign(0.022) TCGA-UC-A7PF-01 11 57077101 57077101 G A TNKS1BP1 Silent p.F1028F 0.19 TCGA-UC-A7PF-01 11 57427146 57427146 C T CLP1 Silent p.F66F 0.35 TCGA-UC-A7PF-01 11 57575940 57575940 G A CTNND1 Missense_Mutation p.E724K 0.27 deleterious(0) possibly_damaging(0.808) TCGA-UC-A7PF-01 11 62744783 62744783 C T SLC22A6 Missense_Mutation p.E480K 0.24 deleterious(0.02) probably_damaging(0.978) TCGA-UC-A7PF-01 11 64055563 64055563 G A GPR137 Silent p.A278A 0.32 TCGA-UC-A7PF-01 11 66189939 66189939 G A NPAS4 Silent p.Q115Q 0.26 TCGA-UC-A7PF-01 11 66191346 66191346 G A NPAS4 Missense_Mutation p.E329K 0.15 deleterious(0) probably_damaging(0.979) TCGA-UC-A7PF-01 11 67376092 67376092 G A NDUFV1 Nonsense_Mutation p.W75* 0.23 TCGA-UC-A7PF-01 11 68518143 68518143 G C MTL5 5'UTR 0.35 TCGA-UC-A7PF-01 11 71705867 71705867 G C RNF121 Missense_Mutation p.E244Q 0.20 deleterious(0.02) benign(0.019) TCGA-UC-A7PF-01 11 74085555 74085555 A G PGM2L1 Missense_Mutation p.C62R 0.43 tolerated(0.21) probably_damaging(0.986) TCGA-UC-A7PF-01 11 77043794 77043794 G A PAK1 Missense_Mutation p.S511L 0.44 deleterious(0) benign(0.026) TCGA-UC-A7PF-01 11 7846834 7846834 T C OR5P3 Missense_Mutation p.H229R 0.16 tolerated(1) benign(0.002) TCGA-UC-A7PF-01 11 86519623 86519623 C T PRSS23 Missense_Mutation p.P313L 0.38 tolerated(0.06) probably_damaging(1) TCGA-UC-A7PF-01 11 99931948 99931948 G A CNTN5 Missense_Mutation p.V329I 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-UC-A7PF-01 12 105322349 105322349 C T SLC41A2 5'UTR 0.30 TCGA-UC-A7PF-01 12 106460991 106460991 C T NUAK1 Silent p.L525L 0.20 TCGA-UC-A7PF-01 12 107208551 107208551 C T RIC8B Silent p.L70L 0.23 TCGA-UC-A7PF-01 12 108686038 108686038 G A CMKLR1 Silent p.L234L 0.39 TCGA-UC-A7PF-01 12 120067563 120067563 G C TMEM233 Missense_Mutation p.G70A 0.38 deleterious(0) probably_damaging(0.976) TCGA-UC-A7PF-01 12 120960131 120960131 C T COQ5 Missense_Mutation p.D80N 0.19 deleterious(0) probably_damaging(1) TCGA-UC-A7PF-01 12 121879957 121879957 C A KDM2B Intron 0.30 TCGA-UC-A7PF-01 12 122962766 122962766 G C ZCCHC8 Missense_Mutation p.S405C 0.19 deleterious(0) probably_damaging(0.979) TCGA-UC-A7PF-01 12 123199991 123199991 A T HCAR3 3'UTR 0.30 TCGA-UC-A7PF-01 12 125396452 125396452 G T UBC Silent p.T622T 0.30 TCGA-UC-A7PF-01 12 133306407 133306407 C T ANKLE2 Missense_Mutation p.D781N 0.27 tolerated(0.41) benign(0.215) TCGA-UC-A7PF-01 12 21242987 21242987 T C SLCO1B7 Silent p.L624L 0.17 TCGA-UC-A7PF-01 12 21997453 21997453 G A ABCC9 Silent p.L1093L 0.16 TCGA-UC-A7PF-01 12 25361199 25361199 C G KRAS 3'Flank 0.32 TCGA-UC-A7PF-01 12 30783672 30783672 G A IPO8 3'UTR 0.24 TCGA-UC-A7PF-01 12 30882050 30882050 G A CAPRIN2 Silent p.S438S 0.32 TCGA-UC-A7PF-01 12 31267342 31267342 G A RP11-551L14.1 RNA 0.16 TCGA-UC-A7PF-01 12 46322156 46322156 G A SCAF11 Missense_Mutation p.S443F 0.26 deleterious(0) possibly_damaging(0.494) TCGA-UC-A7PF-01 12 46577735 46577735 C T SLC38A1 3'UTR 0.18 TCGA-UC-A7PF-01 12 49420619 49420619 C T KMT2D Missense_Mutation p.D5044N 0.43 unknown(0) TCGA-UC-A7PF-01 12 49420832 49420832 C G KMT2D Missense_Mutation p.D4973H 0.38 unknown(0) TCGA-UC-A7PF-01 12 49424551 49424551 C G KMT2D Missense_Mutation p.E4558Q 0.28 unknown(0) TCGA-UC-A7PF-01 12 49425059 49425059 C T KMT2D Missense_Mutation p.G4477R 0.26 unknown(0) TCGA-UC-A7PF-01 12 51686023 51686023 C T BIN2 Silent p.E289E 0.22 TCGA-UC-A7PF-01 12 53646785 53646785 G C MFSD5 Missense_Mutation p.D163H 0.21 deleterious(0) probably_damaging(0.993) TCGA-UC-A7PF-01 12 54428118 54428118 G C HOXC5 Missense_Mutation p.E171Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PF-01 12 56216405 56216405 G A DNAJC14 Silent p.L582L 0.36 TCGA-UC-A7PF-01 12 57881806 57881806 C T MARS 5'UTR 0.33 TCGA-UC-A7PF-01 12 62798108 62798108 G C USP15 Missense_Mutation p.D967H 0.31 deleterious(0.03) benign(0.02) TCGA-UC-A7PF-01 12 6457040 6457040 C T SCNN1A Silent p.%3D 0.44 TCGA-UC-A7PF-01 12 66563707 66563707 G A TMBIM4 Missense_Mutation p.P9S 0.17 tolerated(0.26) benign(0.019) TCGA-UC-A7PF-01 12 81627245 81627245 G A ACSS3 Missense_Mutation p.E572K 0.16 deleterious(0) probably_damaging(0.969) TCGA-UC-A7PF-01 12 97051825 97051825 C G C12orf55 Missense_Mutation p.Q1756E 0.34 deleterious(0.01) benign(0.35) TCGA-UC-A7PF-01 13 107821075 107821075 C G FAM155A 3'UTR 0.22 TCGA-UC-A7PF-01 13 111521805 111521805 G A LINC00346 Silent p.L111L 0.34 TCGA-UC-A7PF-01 13 20660255 20660255 G C ZMYM2 3'UTR 0.18 TCGA-UC-A7PF-01 13 23907900 23907900 G A SACS Missense_Mutation p.S3372L 0.43 benign(0.076) TCGA-UC-A7PF-01 13 28608305 28608305 G C FLT3 Missense_Mutation p.S584C 0.21 deleterious(0) possibly_damaging(0.454) TCGA-UC-A7PF-01 13 28794441 28794441 C G PAN3 Nonsense_Mutation p.S309* 0.17 TCGA-UC-A7PF-01 13 32981467 32981467 C T N4BP2L1 Missense_Mutation p.A106T 0.33 deleterious(0.01) possibly_damaging(0.588) TCGA-UC-A7PF-01 13 32981472 32981472 C G N4BP2L1 Missense_Mutation p.R104T 0.33 deleterious(0) benign(0.045) TCGA-UC-A7PF-01 13 39265951 39265951 C A FREM2 Missense_Mutation p.N1490K 0.29 tolerated(0.06) benign(0.416) TCGA-UC-A7PF-01 13 39613371 39613373 AAC - NHLRC3 In_Frame_Del p.T63del 0.33 TCGA-UC-A7PF-01 13 45965271 45965271 G A SLC25A30 3'Flank 0.26 TCGA-UC-A7PF-01 13 52293346 52293346 G C WDFY2 Missense_Mutation p.R116T 0.39 deleterious(0.02) benign(0.058) TCGA-UC-A7PF-01 13 53419040 53419040 C G PCDH8 Missense_Mutation p.K956N 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-UC-A7PF-01 13 86370657 86370657 G A SLITRK6 5'UTR 0.35 TCGA-UC-A7PF-01 13 99047520 99047520 G A FARP1 Missense_Mutation p.E402K 0.25 tolerated(0.79) benign(0.007) TCGA-UC-A7PF-01 14 100002419 100002419 G A CCDC85C Missense_Mutation p.S267L 0.31 deleterious(0.02) possibly_damaging(0.679) TCGA-UC-A7PF-01 14 103196342 103196342 G A RCOR1 3'UTR 0.23 TCGA-UC-A7PF-01 14 105351721 105351721 G C CEP170B Missense_Mutation p.E596Q 0.25 deleterious(0) probably_damaging(0.962) TCGA-UC-A7PF-01 14 105865645 105865649 GAGGT - TEX22 5'UTR 0.26 TCGA-UC-A7PF-01 14 105946015 105946015 G A CRIP2 3'UTR 0.08 TCGA-UC-A7PF-01 14 105996469 105996469 G A TMEM121 3'UTR 0.36 TCGA-UC-A7PF-01 14 106237724 106237724 G A IGHG3 Missense_Mutation p.S7L 0.22 tolerated(0.08) benign(0.176) TCGA-UC-A7PF-01 14 20925478 20925478 C G APEX1 Silent p.L256L 0.28 TCGA-UC-A7PF-01 14 22314971 22314971 G C TRAV8-2 Missense_Mutation p.E10Q 0.27 tolerated(0.61) benign(0.016) TCGA-UC-A7PF-01 14 23528476 23528476 C T ACIN1 Missense_Mutation p.D1303N 0.22 unknown(0) TCGA-UC-A7PF-01 14 23595608 23595610 GAG AGAC SLC7A8 3'UTR 0.29 TCGA-UC-A7PF-01 14 23993993 23993993 C T ZFHX2 Missense_Mutation p.E1720K 0.19 possibly_damaging(0.504) TCGA-UC-A7PF-01 14 24632271 24632271 G C IRF9 Missense_Mutation p.E93Q 0.29 deleterious(0.01) probably_damaging(1) TCGA-UC-A7PF-01 14 24658033 24658033 G C IPO4 5'UTR 0.33 TCGA-UC-A7PF-01 14 38678280 38678280 C T SSTR1 5'UTR 0.33 TCGA-UC-A7PF-01 14 52458093 52458093 C G C14orf166 Nonsense_Mutation p.Y40* 0.32 TCGA-UC-A7PF-01 14 52485915 52485915 G A NID2 Silent p.D964D 0.38 TCGA-UC-A7PF-01 14 53109250 53109250 G C ERO1L 3'UTR 0.24 TCGA-UC-A7PF-01 14 54418628 54418628 C G BMP4 Missense_Mutation p.E105Q 0.21 tolerated(0.7) benign(0.009) TCGA-UC-A7PF-01 14 54941559 54941559 G C GMFB 3'UTR 0.34 TCGA-UC-A7PF-01 14 57267653 57267653 C T OTX2 3'UTR 0.17 TCGA-UC-A7PF-01 14 60574948 60574948 G A PCNXL4 Intron 0.41 TCGA-UC-A7PF-01 14 64644154 64644154 C T SYNE2 Missense_Mutation p.L5837F 0.32 probably_damaging(0.999) TCGA-UC-A7PF-01 14 64691728 64691728 G T SYNE2 Silent p.V6827V 0.29 TCGA-UC-A7PF-01 14 67671768 67671768 G C FAM71D Missense_Mutation p.E292Q 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-UC-A7PF-01 14 69992774 69992774 C A PLEKHD1 Missense_Mutation p.S286R 0.34 tolerated(0.54) benign(0.012) TCGA-UC-A7PF-01 14 72176352 72176352 C T SIPA1L1 Silent p.F1414F 0.23 TCGA-UC-A7PF-01 14 74824452 74824452 C - VRTN Frame_Shift_Del p.D322Efs*53 0.21 TCGA-UC-A7PF-01 14 77797654 77797654 G C GSTZ1 3'UTR 0.27 TCGA-UC-A7PF-01 15 101832243 101832243 C T SNRPA1 Missense_Mutation p.R78H 0.22 deleterious(0.05) possibly_damaging(0.496) TCGA-UC-A7PF-01 15 20644840 20644840 C T HERC2P3 RNA 0.07 TCGA-UC-A7PF-01 15 28599730 28599730 C G RP11-483E23.2 RNA 0.11 TCGA-UC-A7PF-01 15 34130561 34130561 C T RYR3 Missense_Mutation p.A4127V 0.13 benign(0.001) TCGA-UC-A7PF-01 15 41149135 41149135 G A SPINT1 Missense_Mutation p.E518K 0.24 deleterious(0.04) probably_damaging(0.987) TCGA-UC-A7PF-01 15 43783907 43783907 G C TP53BP1 Missense_Mutation p.Q111E 0.39 deleterious(0.04) probably_damaging(0.952) TCGA-UC-A7PF-01 15 48539623 48539623 C T SLC12A1 Silent p.L550L 0.23 TCGA-UC-A7PF-01 15 51697017 51697017 G C GLDN 3'UTR 0.23 TCGA-UC-A7PF-01 15 52645825 52645825 C T MYO5A Missense_Mutation p.E1200K 0.22 deleterious(0.05) probably_damaging(0.992) TCGA-UC-A7PF-01 15 54307226 54307226 C T UNC13C Missense_Mutation p.S709L 0.38 deleterious_low_confidence(0.04) benign(0.035) TCGA-UC-A7PF-01 15 54307319 54307319 C T UNC13C Missense_Mutation p.S740F 0.21 tolerated_low_confidence(0.06) benign(0.002) TCGA-UC-A7PF-01 15 56152670 56152670 C T NEDD4 Missense_Mutation p.E646K 0.34 deleterious(0.02) possibly_damaging(0.492) TCGA-UC-A7PF-01 15 59344533 59344533 G C RNF111 Missense_Mutation p.E304Q 0.22 deleterious(0) benign(0.003) TCGA-UC-A7PF-01 15 62315719 62315719 T C VPS13C Missense_Mutation p.D172G 0.38 deleterious(0) possibly_damaging(0.589) TCGA-UC-A7PF-01 15 65903173 65903173 C G VWA9 Intron 0.36 TCGA-UC-A7PF-01 15 76497272 76497272 T C C15orf27 3'UTR 0.15 TCGA-UC-A7PF-01 15 85383341 85383341 C T ALPK3 Silent p.N479N 0.20 TCGA-UC-A7PF-01 15 91479682 91479682 C T UNC45A Nonsense_Mutation p.Q140* 0.25 TCGA-UC-A7PF-01 15 91549239 91549239 C T VPS33B Silent p.L301L 0.28 TCGA-UC-A7PF-01 16 1258192 1258192 G T CACNA1H Missense_Mutation p.D1112Y 0.42 deleterious(0.02) possibly_damaging(0.526) TCGA-UC-A7PF-01 16 1536174 1536174 G A PTX4 Silent p.L396L 0.12 TCGA-UC-A7PF-01 16 1727089 1727089 C A CRAMP1L 3'UTR 0.19 TCGA-UC-A7PF-01 16 19547616 19547616 G A CCP110 Missense_Mutation p.E209K 0.22 tolerated(0.09) benign(0.379) TCGA-UC-A7PF-01 16 22337573 22337573 G A POLR3E Missense_Mutation p.A614T 0.09 tolerated(0.43) benign(0.002) TCGA-UC-A7PF-01 16 2296905 2296905 C T ECI1 Silent p.E83E 0.20 TCGA-UC-A7PF-01 16 23366649 23366649 C T SCNN1B Silent p.F205F 0.20 TCGA-UC-A7PF-01 16 28935744 28935744 G A RABEP2 Missense_Mutation p.S85L 0.32 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PF-01 16 3022752 3022752 G C PKMYT1 3'Flank 0.36 TCGA-UC-A7PF-01 16 3023364 3023364 G A PAQR4 3'UTR 0.13 TCGA-UC-A7PF-01 16 31486025 31486025 C T TGFB1I1 Missense_Mutation p.P221S 0.29 tolerated(0.51) benign(0.015) TCGA-UC-A7PF-01 16 4012861 4012861 C G ADCY9 3'UTR 0.26 TCGA-UC-A7PF-01 16 47252809 47252809 C T ITFG1 Missense_Mutation p.D475N 0.20 tolerated(0.2) possibly_damaging(0.685) TCGA-UC-A7PF-01 16 4855097 4855097 G A GLYR1 3'UTR 0.18 TCGA-UC-A7PF-01 16 50070509 50070509 C T CNEP1R1 3'UTR 0.25 TCGA-UC-A7PF-01 16 53726179 53726179 C T RPGRIP1L Missense_Mutation p.E110K 0.22 deleterious(0) probably_damaging(0.978) TCGA-UC-A7PF-01 16 57513656 57513656 G A DOK4 Intron 0.15 TCGA-UC-A7PF-01 16 64981644 64981644 C T CDH11 Silent p.V751V 0.17 TCGA-UC-A7PF-01 16 67688566 67688566 G C RLTPR Missense_Mutation p.E1185Q 0.24 deleterious(0.03) probably_damaging(0.993) TCGA-UC-A7PF-01 16 67688786 67688786 G T RLTPR Nonsense_Mutation p.E1230* 0.28 TCGA-UC-A7PF-01 16 71319737 71319737 G A CMTR2 Silent p.L29L 0.27 TCGA-UC-A7PF-01 16 72198702 72198702 G A PMFBP1 Silent p.D42D 0.27 TCGA-UC-A7PF-01 16 72829029 72829029 G A ZFHX3 Nonsense_Mutation p.Q2518* 0.18 TCGA-UC-A7PF-01 16 78466537 78466537 G A WWOX Missense_Mutation p.G315E 0.18 deleterious(0) possibly_damaging(0.78) TCGA-UC-A7PF-01 16 84229448 84229448 C T ADAD2 Silent p.L442L 0.24 TCGA-UC-A7PF-01 16 84695457 84695457 C G KLHL36 Missense_Mutation p.C523W 0.24 deleterious(0.04) probably_damaging(0.982) TCGA-UC-A7PF-01 16 88677838 88677838 C T ZC3H18 Nonsense_Mutation p.R457* 0.26 TCGA-UC-A7PF-01 16 90038052 90038052 C T CENPBD1 Silent p.L93L 0.33 TCGA-UC-A7PF-01 16 90126825 90126825 C A PRDM7 Missense_Mutation p.G386V 0.10 tolerated_low_confidence(0.6) unknown(0) TCGA-UC-A7PF-01 16 9916129 9916129 C T GRIN2A Silent p.L720L 0.39 TCGA-UC-A7PF-01 16 9916191 9916191 A T GRIN2A Missense_Mutation p.Y700N 0.51 deleterious(0.04) benign(0.142) TCGA-UC-A7PF-01 17 10300225 10300225 C T MYH8 Silent p.K1419K 0.19 TCGA-UC-A7PF-01 17 10600849 10600849 T G SCO1 5'UTR 0.33 TCGA-UC-A7PF-01 17 11896106 11896106 G A ZNF18 Missense_Mutation p.S14L 0.35 tolerated(0.08) benign(0.003) TCGA-UC-A7PF-01 17 14063216 14063216 C G COX10 Nonsense_Mutation p.S216* 0.13 TCGA-UC-A7PF-01 17 15535892 15535892 C T RP11-385D13.1 Missense_Mutation p.E316K 0.15 deleterious_low_confidence(0) benign(0.025) TCGA-UC-A7PF-01 17 1641560 1641560 A G WDR81 3'UTR 0.15 TCGA-UC-A7PF-01 17 16722356 16722356 C G AC022596.6 RNA 0.32 TCGA-UC-A7PF-01 17 27889580 27889580 C G ABHD15 Nonstop_Mutation p.*469Sext*28 0.29 TCGA-UC-A7PF-01 17 3324577 3324577 C G OR3A3 Missense_Mutation p.S239C 0.29 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PF-01 17 34173922 34173922 A T TAF15 Missense_Mutation p.R584S 0.42 deleterious_low_confidence(0) unknown(0) TCGA-UC-A7PF-01 17 35687173 35687173 G A ACACA Missense_Mutation p.S93L 0.23 deleterious_low_confidence(0.02) probably_damaging(0.974) TCGA-UC-A7PF-01 17 36358937 36358937 C T RP11-1407O15.2 Missense_Mutation p.E252K 0.09 TCGA-UC-A7PF-01 17 37687065 37687065 G C CDK12 Missense_Mutation p.L1323F 0.23 possibly_damaging(0.643) TCGA-UC-A7PF-01 17 38644991 38644991 G A TNS4 Nonsense_Mutation p.R224* 0.17 TCGA-UC-A7PF-01 17 40280327 40280327 G A RAB5C Silent p.L164L 0.36 TCGA-UC-A7PF-01 17 40312447 40312447 G A KCNH4 Missense_Mutation p.R889C 0.36 tolerated(0.07) benign(0.006) TCGA-UC-A7PF-01 17 40823481 40823481 G A PLEKHH3 Missense_Mutation p.S391L 0.38 deleterious(0) unknown(0) TCGA-UC-A7PF-01 17 42829477 42829477 C G DBF4B 3'UTR 0.29 TCGA-UC-A7PF-01 17 43180327 43180327 G A NMT1 Silent p.K334K 0.24 TCGA-UC-A7PF-01 17 46199524 46199524 G C SNX11 3'UTR 0.29 TCGA-UC-A7PF-01 17 47075053 47075053 C T IGF2BP1 5'UTR 0.39 TCGA-UC-A7PF-01 17 47126884 47126884 G A IGF2BP1 3'UTR 0.12 TCGA-UC-A7PF-01 17 48745158 48745160 TCT - ABCC3 Intron 0.24 TCGA-UC-A7PF-01 17 49281254 49281254 C G MBTD1 Missense_Mutation p.E213Q 0.25 tolerated(0.11) possibly_damaging(0.636) TCGA-UC-A7PF-01 17 56434537 56434537 G A RNF43 Intron 0.55 TCGA-UC-A7PF-01 17 62019319 62019319 G A SCN4A Silent p.F1441F 0.26 TCGA-UC-A7PF-01 17 62893414 62893414 G A LRRC37A3 5'UTR 0.06 TCGA-UC-A7PF-01 17 6367192 6367192 C G PITPNM3 Missense_Mutation p.Q722H 0.38 tolerated(1) benign(0.019) TCGA-UC-A7PF-01 17 64685163 64685163 G A PRKCA Missense_Mutation p.E306K 0.24 tolerated(0.15) benign(0.029) TCGA-UC-A7PF-01 17 68129878 68129878 G A KCNJ16 3'UTR 0.13 TCGA-UC-A7PF-01 17 74673769 74673769 C T MXRA7 Silent p.Q172Q 0.31 TCGA-UC-A7PF-01 17 76128447 76128447 C G TMC8 Missense_Mutation p.F102L 0.38 deleterious(0) probably_damaging(0.997) TCGA-UC-A7PF-01 17 76130600 76130600 C G TMC8 Missense_Mutation p.I314M 0.17 deleterious(0.02) possibly_damaging(0.703) TCGA-UC-A7PF-01 17 7802458 7802458 G A CHD3 Missense_Mutation p.D820N 0.33 possibly_damaging(0.822) TCGA-UC-A7PF-01 17 78211333 78211333 G A SLC26A11 Missense_Mutation p.G309R 0.20 deleterious(0) benign(0.4) TCGA-UC-A7PF-01 17 8050872 8050872 G A PER1 Silent p.F471F 0.28 TCGA-UC-A7PF-01 17 8051105 8051105 G A PER1 Silent p.I425I 0.33 TCGA-UC-A7PF-01 17 8093446 8093446 G A C17orf59 Missense_Mutation p.R5W 0.19 tolerated_low_confidence(0.06) benign(0.005) TCGA-UC-A7PF-01 17 8137855 8137855 G A CTC1 Missense_Mutation p.S579F 0.22 tolerated(0.21) benign(0.38) TCGA-UC-A7PF-01 18 21119727 21119727 G A NPC1 Intron 0.29 TCGA-UC-A7PF-01 18 21120466 21120466 G A NPC1 Silent p.I850I 0.39 TCGA-UC-A7PF-01 18 22806495 22806495 G C ZNF521 Missense_Mutation p.Q463E 0.25 tolerated(1) benign(0.003) TCGA-UC-A7PF-01 18 2938016 2938016 G C LPIN2 Missense_Mutation p.S281C 0.23 tolerated(0.18) benign(0.144) TCGA-UC-A7PF-01 18 32470096 32470096 G C DTNA Intron 0.22 TCGA-UC-A7PF-01 18 33034759 33034759 G A RP11-322E11.6 Intron 0.25 TCGA-UC-A7PF-01 18 346407 346407 C T COLEC12 Silent p.L405L 0.34 TCGA-UC-A7PF-01 18 59217360 59217360 G A CDH20 Missense_Mutation p.D600N 0.18 tolerated(0.3) benign(0) TCGA-UC-A7PF-01 18 6238035 6238035 C T L3MBTL4 Missense_Mutation p.D238N 0.16 deleterious(0) possibly_damaging(0.624) TCGA-UC-A7PF-01 18 67857917 67857917 G C RTTN Missense_Mutation p.S349C 0.17 deleterious(0.04) benign(0.126) TCGA-UC-A7PF-01 19 1053488 1053488 G A ABCA7 Silent p.L1127L 0.38 TCGA-UC-A7PF-01 19 1119543 1119543 C G SBNO2 Missense_Mutation p.E449Q 0.13 tolerated(0.3) benign(0.071) TCGA-UC-A7PF-01 19 11978581 11978581 G T ZNF439 Nonsense_Mutation p.E233* 0.28 TCGA-UC-A7PF-01 19 12792434 12792434 G T DHPS Missense_Mutation p.F49L 0.31 tolerated(0.28) benign(0.004) TCGA-UC-A7PF-01 19 17690345 17690345 G A COLGALT1 Missense_Mutation p.E441K 0.28 deleterious(0.01) possibly_damaging(0.859) TCGA-UC-A7PF-01 19 17756547 17756547 G A UNC13A Silent p.F764F 0.25 TCGA-UC-A7PF-01 19 18254611 18254611 C T MAST3 Missense_Mutation p.S764L 0.25 tolerated_low_confidence(0.06) benign(0.001) TCGA-UC-A7PF-01 19 18254622 18254622 C T MAST3 Nonsense_Mutation p.Q768* 0.26 TCGA-UC-A7PF-01 19 18255851 18255851 C T MAST3 Missense_Mutation p.P922S 0.35 tolerated(0.1) probably_damaging(0.998) TCGA-UC-A7PF-01 19 18288689 18288689 A G IFI30 Missense_Mutation p.T241A 0.31 tolerated(1) benign(0.004) TCGA-UC-A7PF-01 19 18572604 18572604 C T ELL Silent p.R176R 0.19 TCGA-UC-A7PF-01 19 18705208 18705208 C T CRLF1 Missense_Mutation p.R354Q 0.33 tolerated_low_confidence(0.1) benign(0.013) TCGA-UC-A7PF-01 19 19338264 19338264 C T NCAN Missense_Mutation p.S612L 0.22 tolerated(0.32) benign(0.001) TCGA-UC-A7PF-01 19 19822274 19822274 C T ZNF14 Missense_Mutation p.E606K 0.24 tolerated(0.36) probably_damaging(0.987) TCGA-UC-A7PF-01 19 21606171 21606171 C T ZNF493 Missense_Mutation p.S237F 0.19 deleterious(0.03) possibly_damaging(0.906) TCGA-UC-A7PF-01 19 2217776 2217776 G C DOT1L Silent p.L850L 0.18 TCGA-UC-A7PF-01 19 2732803 2732803 G C SLC39A3 Silent p.L297L 0.14 TCGA-UC-A7PF-01 19 2900907 2900907 G A ZNF57 5'UTR 0.16 TCGA-UC-A7PF-01 19 307174 307174 G A MIER2 Silent p.L521L 0.22 TCGA-UC-A7PF-01 19 36339024 36339024 C T NPHS1 Silent p.Q453Q 0.24 TCGA-UC-A7PF-01 19 3779086 3779086 C G MATK Missense_Mutation p.K368N 0.23 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PF-01 19 38160922 38160922 C G ZNF781 Missense_Mutation p.R43T 0.16 tolerated(0.52) benign(0.053) TCGA-UC-A7PF-01 19 38610012 38610012 C T SIPA1L3 Silent p.F786F 0.23 TCGA-UC-A7PF-01 19 38973965 38973965 C T RYR1 Silent p.S1581S 0.18 TCGA-UC-A7PF-01 19 39100263 39100263 G A MAP4K1 Silent p.L327L 0.19 TCGA-UC-A7PF-01 19 41094630 41094630 C G SHKBP1 Missense_Mutation p.I479M 0.35 deleterious(0.01) possibly_damaging(0.867) TCGA-UC-A7PF-01 19 41916713 41916713 G C BCKDHA Missense_Mutation p.D94H 0.29 deleterious(0.01) possibly_damaging(0.883) TCGA-UC-A7PF-01 19 43244573 43244573 G A PSG3 5'UTR 0.26 TCGA-UC-A7PF-01 19 44097011 44097011 C G IRGQ Missense_Mutation p.E347Q 0.37 tolerated(0.39) possibly_damaging(0.65) TCGA-UC-A7PF-01 19 4538642 4538642 C G LRG1 Silent p.L118L 0.19 TCGA-UC-A7PF-01 19 45419568 45419568 T C APOC1 Silent p.L60L 0.17 TCGA-UC-A7PF-01 19 45648494 45648494 C T PPP1R37 Silent p.L424L 0.35 TCGA-UC-A7PF-01 19 47425167 47425167 C G ARHGAP35 Missense_Mutation p.Q1079E 0.20 tolerated(1) benign(0.001) TCGA-UC-A7PF-01 19 49110110 49110110 G C SPACA4 5'UTR 0.39 TCGA-UC-A7PF-01 19 50243366 50243366 G A TSKS Silent p.D524D 0.10 TCGA-UC-A7PF-01 19 50374830 50374830 G A AKT1S1 Missense_Mutation p.R221W 0.34 deleterious(0.01) possibly_damaging(0.897) TCGA-UC-A7PF-01 19 51298186 51298186 C T ACPT Missense_Mutation p.S377F 0.35 deleterious(0) benign(0.061) TCGA-UC-A7PF-01 19 51607718 51607718 C T CTU1 Missense_Mutation p.E37K 0.24 deleterious(0.01) probably_damaging(0.984) TCGA-UC-A7PF-01 19 51914283 51914283 C G SIGLEC10 3'UTR 0.13 TCGA-UC-A7PF-01 19 51955436 51955436 C T SIGLEC8 3'UTR 0.18 TCGA-UC-A7PF-01 19 52001271 52001271 C A SIGLEC12 Splice_Site p.X469_splice 0.24 TCGA-UC-A7PF-01 19 52468865 52468865 G A ZNF350 Nonsense_Mutation p.Q281* 0.19 TCGA-UC-A7PF-01 19 52469366 52469366 G A ZNF350 Missense_Mutation p.H114Y 0.16 tolerated(0.12) benign(0.335) TCGA-UC-A7PF-01 19 52954654 52954654 C T ZNF578 5'Flank 0.35 TCGA-UC-A7PF-01 19 53431737 53431737 C T ZNF321P 3'UTR 0.15 TCGA-UC-A7PF-01 19 53884991 53884991 G A ZNF525 Missense_Mutation p.D387N 0.15 deleterious(0) benign(0.298) TCGA-UC-A7PF-01 19 53885558 53885558 G C ZNF525 3'UTR 0.18 TCGA-UC-A7PF-01 19 53885602 53885602 C A ZNF525 3'UTR 0.20 TCGA-UC-A7PF-01 19 53887127 53887127 G C ZNF525 3'UTR 0.15 TCGA-UC-A7PF-01 19 53958186 53958186 C T ZNF761 RNA 0.16 TCGA-UC-A7PF-01 19 54720748 54720748 G C LILRB3 3'Flank 0.26 TCGA-UC-A7PF-01 19 56321472 56321472 C T NLRP11 Silent p.L168L 0.22 TCGA-UC-A7PF-01 19 56436353 56436353 T C NLRP13 Missense_Mutation p.E123G 0.14 tolerated(0.43) benign(0.001) TCGA-UC-A7PF-01 19 5667852 5667852 G C SAFB Missense_Mutation p.G860A 0.38 deleterious(0.02) unknown(0) TCGA-UC-A7PF-01 19 57133912 57133912 C T ZNF71 Silent p.F419F 0.19 TCGA-UC-A7PF-01 19 572634 572634 C A BSG 5'UTR 0.16 TCGA-UC-A7PF-01 19 5733954 5733954 G T CATSPERD Nonsense_Mutation p.E122* 0.19 TCGA-UC-A7PF-01 19 6471304 6471304 G A DENND1C Missense_Mutation p.S421F 0.14 deleterious(0) probably_damaging(0.99) TCGA-UC-A7PF-01 19 6828096 6828096 C T VAV1 Nonsense_Mutation p.Q313* 0.16 TCGA-UC-A7PF-01 19 7618874 7618874 G C PNPLA6 Missense_Mutation p.E802Q 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-UC-A7PF-01 19 899468 899468 G A R3HDM4 Silent p.V225V 0.46 TCGA-UC-A7PF-01 19 9075567 9075567 G C MUC16 Missense_Mutation p.S3960C 0.23 unknown(0) TCGA-UC-A7PF-01 19 9090942 9090942 G A MUC16 Silent p.L291L 0.16 TCGA-UC-A7PF-01 1 100571329 100571329 C G SASS6 Silent p.L513L 0.26 TCGA-UC-A7PF-01 1 10384847 10384847 G C KIF1B Missense_Mutation p.D811H 0.25 tolerated(0.26) probably_damaging(0.999) TCGA-UC-A7PF-01 1 10510270 10510270 C T CORT 5'UTR 0.29 TCGA-UC-A7PF-01 1 110148667 110148667 G A GNAT2 Silent p.F215F 0.17 TCGA-UC-A7PF-01 1 1114911 1114911 C T TTLL10 Intron 0.15 TCGA-UC-A7PF-01 1 11188178 11188178 G A MTOR Silent p.L1972L 0.23 TCGA-UC-A7PF-01 1 114680163 114680163 A G SYT6 Missense_Mutation p.L257P 0.16 tolerated(0.06) probably_damaging(0.98) TCGA-UC-A7PF-01 1 11579820 11579820 G T PTCHD2 Nonsense_Mutation p.E695* 0.34 TCGA-UC-A7PF-01 1 11886216 11886216 C G CLCN6 Missense_Mutation p.Q218E 0.33 tolerated(0.05) benign(0.114) TCGA-UC-A7PF-01 1 13475010 13475010 C T PRAMEF18 Silent p.L373L 0.23 TCGA-UC-A7PF-01 1 139031 139031 G A AL627309.1 Silent p.L93L 0.18 TCGA-UC-A7PF-01 1 145074997 145074997 G A PDE4DIP Silent p.I99I 0.15 TCGA-UC-A7PF-01 1 147086292 147086292 C G BCL9 Nonsense_Mutation p.S146* 0.31 TCGA-UC-A7PF-01 1 151381262 151381262 G A POGZ Missense_Mutation p.L657F 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-UC-A7PF-01 1 151810551 151810551 C T C2CD4D Silent p.L305L 0.14 TCGA-UC-A7PF-01 1 152281552 152281552 G C FLG Missense_Mutation p.S1937C 0.25 possibly_damaging(0.7) TCGA-UC-A7PF-01 1 154315287 154315287 G A ATP8B2 Missense_Mutation p.D468N 0.26 deleterious(0.04) benign(0.015) TCGA-UC-A7PF-01 1 154522191 154522191 C T UBE2Q1 3'UTR 0.32 TCGA-UC-A7PF-01 1 155239497 155239497 C T CLK2 Missense_Mutation p.D61N 0.33 tolerated(0.36) unknown(0) TCGA-UC-A7PF-01 1 155785975 155785975 G C GON4L Intron 0.25 TCGA-UC-A7PF-01 1 15978270 15978270 G A DDI2 Missense_Mutation p.E355K 0.22 deleterious(0) probably_damaging(0.997) TCGA-UC-A7PF-01 1 160105007 160105007 C G ATP1A2 Silent p.L679L 0.22 TCGA-UC-A7PF-01 1 161495804 161495804 C G HSPA6 Silent p.T452T 0.20 TCGA-UC-A7PF-01 1 16242628 16242628 G A SPEN Missense_Mutation p.E417K 0.27 probably_damaging(0.991) TCGA-UC-A7PF-01 1 16242634 16242634 G A SPEN Missense_Mutation p.E419K 0.26 probably_damaging(0.991) TCGA-UC-A7PF-01 1 16264463 16264463 G A SPEN Missense_Mutation p.E3556K 0.37 probably_damaging(0.991) TCGA-UC-A7PF-01 1 163325471 163325471 C G NUF2 3'UTR 0.14 TCGA-UC-A7PF-01 1 169676572 169676572 G C SELL Nonsense_Mutation p.S177* 0.24 TCGA-UC-A7PF-01 1 170024468 170024468 C T KIFAP3 Missense_Mutation p.E48K 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-UC-A7PF-01 1 1823744 1823744 C G GNB1 5'Flank 0.26 TCGA-UC-A7PF-01 1 183861279 183861279 G A RGL1 Missense_Mutation p.R410Q 0.25 deleterious(0) probably_damaging(1) TCGA-UC-A7PF-01 1 196711155 196711155 G A CFH Missense_Mutation p.R1036K 0.14 tolerated(1) benign(0) TCGA-UC-A7PF-01 1 202399874 202399874 G C PPP1R12B Missense_Mutation p.E313Q 0.49 tolerated(0.06) possibly_damaging(0.666) TCGA-UC-A7PF-01 1 202700053 202700053 C G KDM5B Missense_Mutation p.R1387T 0.22 tolerated(0.56) benign(0.002) TCGA-UC-A7PF-01 1 203771389 203771389 C T ZC3H11A 5'UTR 0.25 TCGA-UC-A7PF-01 1 204095588 204095588 G A SOX13 3'UTR 0.25 TCGA-UC-A7PF-01 1 205592829 205592829 C T ELK4 Missense_Mutation p.R61Q 0.43 deleterious(0) probably_damaging(0.983) TCGA-UC-A7PF-01 1 209605571 209605571 G A MIR205HG RNA 0.32 TCGA-UC-A7PF-01 1 209605579 209605579 G A MIR205HG RNA 0.33 TCGA-UC-A7PF-01 1 210111619 210111619 G C SYT14 Missense_Mutation p.L8F 0.20 benign(0.003) TCGA-UC-A7PF-01 1 212118246 212118246 C T INTS7 Silent p.L827L 0.35 TCGA-UC-A7PF-01 1 216850524 216850524 C T ESRRG Silent p.S127S 0.36 TCGA-UC-A7PF-01 1 224346826 224346826 G C FBXO28 3'UTR 0.29 TCGA-UC-A7PF-01 1 230415399 230415399 T C GALNT2 3'UTR 0.19 TCGA-UC-A7PF-01 1 237013777 237013777 A C MTR Missense_Mutation p.H550P 0.11 deleterious(0) probably_damaging(1) TCGA-UC-A7PF-01 1 245850611 245850611 G A KIF26B Silent p.L1442L 0.24 TCGA-UC-A7PF-01 1 247013291 247013291 C G AHCTF1 Missense_Mutation p.R2015T 0.16 tolerated(0.37) benign(0.041) TCGA-UC-A7PF-01 1 247654732 247654732 C G OR2W5 RNA 0.22 TCGA-UC-A7PF-01 1 248343443 248343443 C A OR2M2 Missense_Mutation p.D52E 0.23 tolerated(0.06) benign(0.126) TCGA-UC-A7PF-01 1 25894729 25894729 G A LDLRAP1 3'UTR 0.28 TCGA-UC-A7PF-01 1 27092778 27092778 G A ARID1A Silent p.G933G 0.25 TCGA-UC-A7PF-01 1 27742548 27742548 G C WASF2 Missense_Mutation p.F156L 0.33 deleterious(0) unknown(0) TCGA-UC-A7PF-01 1 27949617 27949617 C T FGR Missense_Mutation p.E89K 0.33 tolerated(0.05) benign(0.016) TCGA-UC-A7PF-01 1 35250933 35250933 C T GJB3 Silent p.F190F 0.19 TCGA-UC-A7PF-01 1 36550612 36550612 G A TEKT2 Silent p.L30L 0.30 TCGA-UC-A7PF-01 1 36551587 36551587 G A TEKT2 Missense_Mutation p.E145K 0.24 deleterious(0.01) possibly_damaging(0.71) TCGA-UC-A7PF-01 1 40723960 40723960 C A ZMPSTE24 Nonsense_Mutation p.S6* 0.18 TCGA-UC-A7PF-01 1 41157217 41157217 G T NFYC 5'Flank 0.38 TCGA-UC-A7PF-01 1 44386147 44386147 C T ST3GAL3 Silent p.L341L 0.33 TCGA-UC-A7PF-01 1 45115372 45115372 G C RNF220 Silent p.L495L 0.20 TCGA-UC-A7PF-01 1 45232560 45232560 C G KIF2C Silent p.T678T 0.17 TCGA-UC-A7PF-01 1 45267370 45267370 C T PLK3 Missense_Mutation p.S171F 0.32 deleterious(0) probably_damaging(0.983) TCGA-UC-A7PF-01 1 45471535 45471535 A G HECTD3 Silent p.F622F 0.07 TCGA-UC-A7PF-01 1 46808639 46808639 G A NSUN4 Intron 0.26 TCGA-UC-A7PF-01 1 51737136 51737136 G A RNF11 3'UTR 0.21 TCGA-UC-A7PF-01 1 53237052 53237052 C G ZYG11B Missense_Mutation p.P186R 0.40 deleterious(0) possibly_damaging(0.901) TCGA-UC-A7PF-01 1 6189088 6189088 C T CHD5 Silent p.V1143V 0.24 TCGA-UC-A7PF-01 1 66067544 66067544 C T LEPR Missense_Mutation p.S435L 0.26 deleterious(0.01) benign(0.078) TCGA-UC-A7PF-01 1 85624337 85624337 G A SYDE2 3'UTR 0.42 TCGA-UC-A7PF-01 1 86591521 86591521 A G COL24A1 Silent p.F166F 0.11 TCGA-UC-A7PF-01 1 8716493 8716493 C G RERE 5'UTR 0.26 TCGA-UC-A7PF-01 1 90400119 90400119 G A LRRC8D Missense_Mutation p.E498K 0.29 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PF-01 1 92632614 92632614 C T KIAA1107 5'UTR 0.28 TCGA-UC-A7PF-01 20 1615977 1615977 G A SIRPG Silent p.V339V 0.31 TCGA-UC-A7PF-01 20 21695220 21695220 C A PAX1 Silent p.R462R 0.32 TCGA-UC-A7PF-01 20 30253124 30253124 G C BCL2L1 3'UTR 0.33 TCGA-UC-A7PF-01 20 34575384 34575384 G C CNBD2 Missense_Mutation p.E262Q 0.14 tolerated(0.06) possibly_damaging(0.508) TCGA-UC-A7PF-01 20 3605170 3605170 C T ATRN Nonsense_Mutation p.Q1272* 0.27 TCGA-UC-A7PF-01 20 40706859 40706859 C T PTPRT 3'UTR 0.17 TCGA-UC-A7PF-01 20 44506550 44506550 G A ZSWIM3 Silent p.L451L 0.41 TCGA-UC-A7PF-01 20 4705593 4705593 C G PRND Silent p.L132L 0.24 TCGA-UC-A7PF-01 20 4770300 4770300 C T RASSF2 Missense_Mutation p.R194H 0.18 deleterious(0) probably_damaging(1) TCGA-UC-A7PF-01 20 56191472 56191472 C T ZBP1 Silent p.V29V 0.43 TCGA-UC-A7PF-01 20 57415168 57415168 C T RP4-806M20.3 5'Flank 0.40 TCGA-UC-A7PF-01 20 60969990 60969990 C T CABLES2 Intron 0.51 TCGA-UC-A7PF-01 20 61598100 61598100 C G SLC17A9 Intron 0.30 TCGA-UC-A7PF-01 20 62160789 62160789 C T PTK6 3'UTR 0.24 TCGA-UC-A7PF-01 20 62320895 62320895 G T RTEL1 Missense_Mutation p.G664V 0.25 deleterious(0) probably_damaging(0.993) TCGA-UC-A7PF-01 20 9317838 9317838 G A PLCB4 Nonsense_Mutation p.W50* 0.05 TCGA-UC-A7PF-01 21 19701525 19701525 C G TMPRSS15 Missense_Mutation p.E581Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-UC-A7PF-01 21 28210520 28210520 G A ADAMTS1 Missense_Mutation p.S761F 0.28 tolerated(0.35) probably_damaging(0.956) TCGA-UC-A7PF-01 21 34635044 34635044 G C IFNAR2 Intron 0.29 TCGA-UC-A7PF-01 21 45978470 45978470 C T KRTAP10-3 Silent p.L43L 0.23 TCGA-UC-A7PF-01 21 46875882 46875882 G A COL18A1 Silent p.E146E 0.24 TCGA-UC-A7PF-01 21 46925096 46925096 C T COL18A1 Nonsense_Mutation p.Q1153* 0.19 TCGA-UC-A7PF-01 21 47734872 47734872 C G C21orf58 Intron 0.20 TCGA-UC-A7PF-01 21 47836346 47836346 G C PCNT Missense_Mutation p.D2172H 0.11 probably_damaging(0.953) TCGA-UC-A7PF-01 22 21134114 21134114 G C SERPIND1 Missense_Mutation p.E172Q 0.32 tolerated(0.52) benign(0.004) TCGA-UC-A7PF-01 22 21842196 21842196 C G PI4KAP2 RNA 0.20 TCGA-UC-A7PF-01 22 23637246 23637246 G A BCR Silent p.L972L 0.32 TCGA-UC-A7PF-01 22 28147025 28147025 G C MN1 Missense_Mutation p.L1281V 0.23 possibly_damaging(0.718) TCGA-UC-A7PF-01 22 37471306 37471306 C T TMPRSS6 Missense_Mutation p.R413H 0.25 deleterious(0) probably_damaging(0.993) TCGA-UC-A7PF-01 22 38641959 38641959 C T TMEM184B Missense_Mutation p.V114I 0.26 tolerated(0.81) benign(0.021) TCGA-UC-A7PF-01 22 39041581 39041581 G A FAM227A Missense_Mutation p.S65L 0.34 tolerated(1) benign(0.001) TCGA-UC-A7PF-01 22 42267031 42267031 C T SREBF2 Nonsense_Mutation p.Q287* 0.34 TCGA-UC-A7PF-01 22 42486935 42486935 G A NDUFA6 5'UTR 0.33 TCGA-UC-A7PF-01 22 46757100 46757100 G C CELSR1 3'UTR 0.23 TCGA-UC-A7PF-01 22 47083041 47083041 G A CERK Missense_Mutation p.S535L 0.20 tolerated_low_confidence(0.06) benign(0.002) TCGA-UC-A7PF-01 22 49145893 49145893 C T FAM19A5 3'UTR 0.42 TCGA-UC-A7PF-01 2 118586868 118586868 G C DDX18 Missense_Mutation p.E566Q 0.41 deleterious(0.01) benign(0.16) TCGA-UC-A7PF-01 2 119599754 119599754 C T EN1 3'UTR 0.45 TCGA-UC-A7PF-01 2 119749366 119749366 G A MARCO Silent p.V374V 0.37 TCGA-UC-A7PF-01 2 122182816 122182816 G A CLASP1 Missense_Mutation p.S704F 0.42 tolerated(0.43) benign(0.104) TCGA-UC-A7PF-01 2 135738524 135738524 C T MAP3K19 Missense_Mutation p.G1263R 0.37 deleterious(0) probably_damaging(0.983) TCGA-UC-A7PF-01 2 136499499 136499499 G A UBXN4 5'UTR 0.38 TCGA-UC-A7PF-01 2 139327027 139327027 G C SPOPL 3'UTR 0.32 TCGA-UC-A7PF-01 2 152285401 152285401 G A RIF1 Nonsense_Mutation p.W297* 0.22 TCGA-UC-A7PF-01 2 152547324 152547324 G A NEB Missense_Mutation p.H743Y 0.38 probably_damaging(0.945) TCGA-UC-A7PF-01 2 174086208 174086208 G A MLTK Intron 0.22 TCGA-UC-A7PF-01 2 175436510 175436510 G C WIPF1 Silent p.L341L 0.46 TCGA-UC-A7PF-01 2 179432591 179432591 C T TTN Missense_Mutation p.D26090N 0.24 TCGA-UC-A7PF-01 2 179700866 179700866 C G CCDC141 Intron 0.23 TCGA-UC-A7PF-01 2 186659528 186659528 G A FSIP2 Silent p.V2644V 0.22 TCGA-UC-A7PF-01 2 188331689 188331689 C T TFPI Missense_Mutation p.E297K 0.46 tolerated(0.16) benign(0.027) TCGA-UC-A7PF-01 2 193059552 193059552 G C TMEFF2 5'UTR 0.06 TCGA-UC-A7PF-01 2 201845157 201845157 C T FAM126B 3'UTR 0.22 TCGA-UC-A7PF-01 2 202593355 202593355 C T ALS2 Silent p.L907L 0.52 TCGA-UC-A7PF-01 2 209136281 209136281 C T PIKFYVE Missense_Mutation p.S13F 0.46 tolerated_low_confidence(0.72) benign(0.157) TCGA-UC-A7PF-01 2 211467045 211467045 C T CPS1 Silent p.L615L 0.45 TCGA-UC-A7PF-01 2 213865132 213865132 C G IKZF2 3'UTR 0.41 TCGA-UC-A7PF-01 2 213865681 213865681 C T IKZF2 3'UTR 0.56 TCGA-UC-A7PF-01 2 213865788 213865788 C T IKZF2 3'UTR 0.56 TCGA-UC-A7PF-01 2 220494063 220494063 G A SLC4A3 Missense_Mutation p.E139K 0.51 tolerated_low_confidence(0.07) benign(0.069) TCGA-UC-A7PF-01 2 230667174 230667174 A G TRIP12 Silent p.G925G 0.39 TCGA-UC-A7PF-01 2 234229394 234229394 C T SAG Silent p.A100A 0.62 TCGA-UC-A7PF-01 2 238296430 238296430 C T COL6A3 Silent p.L369L 0.42 TCGA-UC-A7PF-01 2 26359416 26359416 C T RAB10 3'UTR 0.26 TCGA-UC-A7PF-01 2 30980990 30980990 C T CAPN13 Missense_Mutation p.R263K 0.43 tolerated(0.59) benign(0.05) TCGA-UC-A7PF-01 2 37215840 37215840 C T HEATR5B Missense_Mutation p.E1954K 0.23 deleterious(0.01) benign(0.206) TCGA-UC-A7PF-01 2 44051059 44051059 C T ABCG5 Silent p.V439V 0.35 TCGA-UC-A7PF-01 2 46574022 46574022 G C EPAS1 Missense_Mutation p.E13Q 0.54 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PF-01 2 50149205 50149205 C G NRXN1 Missense_Mutation p.E1507D 0.21 deleterious(0.01) possibly_damaging(0.511) TCGA-UC-A7PF-01 2 55193939 55193939 G T EML6 Intron 0.20 TCGA-UC-A7PF-01 2 55193953 55193953 G A EML6 Intron 0.20 TCGA-UC-A7PF-01 2 73118555 73118555 G A SPR Silent p.L225L 0.21 TCGA-UC-A7PF-01 2 74479361 74479361 C T SLC4A5 Missense_Mutation p.D475N 0.23 deleterious(0.03) possibly_damaging(0.645) TCGA-UC-A7PF-01 2 85035553 85035553 G C DNAH6 Missense_Mutation p.E3876Q 0.46 tolerated(0.09) benign(0.314) TCGA-UC-A7PF-01 2 89619878 89619878 G A IGKV1-39 5'UTR 0.40 TCGA-UC-A7PF-01 3 105293877 105293877 G A ALCAM 3'UTR 0.31 TCGA-UC-A7PF-01 3 108156543 108156543 C T MYH15 Missense_Mutation p.E1047K 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-UC-A7PF-01 3 108361302 108361302 C G DZIP3 Missense_Mutation p.S361C 0.17 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-UC-A7PF-01 3 119217511 119217511 C G TIMMDC1 5'UTR 0.17 TCGA-UC-A7PF-01 3 125648495 125648495 G A ALG1L Intron 0.32 TCGA-UC-A7PF-01 3 126733396 126733396 G A PLXNA1 Missense_Mutation p.E894K 0.22 tolerated(0.74) benign(0.016) TCGA-UC-A7PF-01 3 133306335 133306335 G A CDV3 Intron 0.33 TCGA-UC-A7PF-01 3 133663963 133663963 C G SLCO2A1 Missense_Mutation p.M479I 0.17 tolerated(0.72) benign(0) TCGA-UC-A7PF-01 3 157154774 157154774 G A PTX3 Missense_Mutation p.E18K 0.15 tolerated(0.14) benign(0.178) TCGA-UC-A7PF-01 3 159995098 159995098 C A IFT80 Nonsense_Mutation p.E699* 0.22 TCGA-UC-A7PF-01 3 167090681 167090681 T C ZBBX Silent p.R3R 0.16 TCGA-UC-A7PF-01 3 170841401 170841401 G A TNIK Nonsense_Mutation p.Q702* 0.38 TCGA-UC-A7PF-01 3 173996843 173996843 G C NLGN1 Missense_Mutation p.R351P 0.48 tolerated(0.23) probably_damaging(0.981) TCGA-UC-A7PF-01 3 176742862 176742862 C T TBL1XR1 3'UTR 0.14 TCGA-UC-A7PF-01 3 180688094 180688094 G A FXR1 Silent p.L517L 0.13 TCGA-UC-A7PF-01 3 183951032 183951032 C T VWA5B2 Missense_Mutation p.A126V 0.32 deleterious(0) benign(0.251) TCGA-UC-A7PF-01 3 183953000 183953000 G A VWA5B2 Silent p.L335L 0.11 TCGA-UC-A7PF-01 3 184056262 184056262 G A FAM131A Missense_Mutation p.R59Q 0.24 tolerated(0.39) possibly_damaging(0.776) TCGA-UC-A7PF-01 3 184642661 184642661 G A VPS8 Silent p.E822E 0.19 TCGA-UC-A7PF-01 3 187388066 187388066 C T SST Missense_Mutation p.R5H 0.12 tolerated(0.13) benign(0.075) TCGA-UC-A7PF-01 3 193332657 193332657 C T OPA1 Nonsense_Mutation p.Q60* 0.27 TCGA-UC-A7PF-01 3 193355761 193355761 G C OPA1 Missense_Mutation p.Q334H 0.18 deleterious(0) probably_damaging(1) TCGA-UC-A7PF-01 3 194337995 194337995 G A TMEM44 Missense_Mutation p.R253W 0.13 deleterious(0.04) probably_damaging(0.963) TCGA-UC-A7PF-01 3 195514252 195514252 G A MUC4 Missense_Mutation p.S1400L 0.52 unknown(0) TCGA-UC-A7PF-01 3 195712624 195712624 C G SDHAP1 RNA 0.05 TCGA-UC-A7PF-01 3 33188414 33188414 A G CRTAP 3'UTR 0.12 TCGA-UC-A7PF-01 3 47963325 47963325 G T MAP4 Silent p.V153V 0.31 TCGA-UC-A7PF-01 3 48675322 48675322 C T CELSR3 3'UTR 0.32 TCGA-UC-A7PF-01 3 48678853 48678853 C T CELSR3 Missense_Mutation p.D2977N 0.43 deleterious_low_confidence(0) possibly_damaging(0.609) TCGA-UC-A7PF-01 3 48731583 48731583 C G IP6K2 Intron 0.27 TCGA-UC-A7PF-01 3 49691094 49691094 G A BSN Missense_Mutation p.E1369K 0.40 unknown(0) TCGA-UC-A7PF-01 3 93780203 93780203 C T DHFRL1 Silent p.V51V 0.12 TCGA-UC-A7PF-01 4 102946642 102946642 G A BANK1 Missense_Mutation p.E524K 0.25 tolerated(0.12) benign(0.442) TCGA-UC-A7PF-01 4 139979093 139979093 C T ELF2 3'UTR 0.19 TCGA-UC-A7PF-01 4 139979952 139979952 C G ELF2 3'UTR 0.27 TCGA-UC-A7PF-01 4 184203978 184203978 G - WWC2 Frame_Shift_Del p.M935* 0.23 TCGA-UC-A7PF-01 4 187004056 187004056 C T TLR3 Missense_Mutation p.H406Y 0.26 tolerated(0.09) benign(0.002) TCGA-UC-A7PF-01 4 25280182 25280182 G C PI4K2B 3'UTR 0.19 TCGA-UC-A7PF-01 4 3040219 3040219 C G GRK4 Missense_Mutation p.F554L 0.22 tolerated(0.83) benign(0.01) TCGA-UC-A7PF-01 4 41631748 41631748 C T LIMCH1 Intron 0.17 TCGA-UC-A7PF-01 4 41691628 41691628 C G LIMCH1 Silent p.L1033L 0.34 TCGA-UC-A7PF-01 4 44450311 44450311 G A KCTD8 Missense_Mutation p.S77F 0.41 deleterious(0) benign(0.329) TCGA-UC-A7PF-01 4 47427865 47427865 G T GABRB1 Missense_Mutation p.D419Y 0.17 deleterious(0.01) possibly_damaging(0.515) TCGA-UC-A7PF-01 4 47453588 47453588 G A COMMD8 3'UTR 0.25 TCGA-UC-A7PF-01 4 6279366 6279366 G A WFS1 Missense_Mutation p.E62K 0.28 tolerated(0.74) benign(0.002) TCGA-UC-A7PF-01 4 69048365 69048365 A G FTLP10 RNA 0.15 TCGA-UC-A7PF-01 4 83740402 83740402 G A SEC31A Missense_Mutation p.S1163L 0.34 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PF-01 4 87638211 87638211 C T PTPN13 Silent p.S442S 0.22 TCGA-UC-A7PF-01 4 88901544 88901544 G C SPP1 Splice_Site p.X59_splice 0.24 TCGA-UC-A7PF-01 4 90169501 90169501 C T GPRIN3 Silent p.K587K 0.35 TCGA-UC-A7PF-01 5 1036407 1036407 G A NKD2 Missense_Mutation p.R232Q 0.19 tolerated(0.61) benign(0.286) TCGA-UC-A7PF-01 5 135567044 135567044 C G TRPC7 Missense_Mutation p.E680Q 0.33 tolerated(0.09) possibly_damaging(0.677) TCGA-UC-A7PF-01 5 140589396 140589396 C G PCDHB12 Missense_Mutation p.P306R 0.16 tolerated_low_confidence(0.39) benign(0.008) TCGA-UC-A7PF-01 5 150228060 150228060 G A IRGM Missense_Mutation p.M125I 0.35 tolerated(0.26) benign(0.14) TCGA-UC-A7PF-01 5 154393825 154393825 C T KIF4B Silent p.L136L 0.19 TCGA-UC-A7PF-01 5 158125974 158125974 G C EBF1 3'UTR 0.08 TCGA-UC-A7PF-01 5 161277835 161277835 C T GABRA1 Silent p.L7L 0.15 TCGA-UC-A7PF-01 5 173536005 173536005 C G NSG2 3'UTR 0.19 TCGA-UC-A7PF-01 5 177419783 177419783 G A PROP1 Missense_Mutation p.A203V 0.24 tolerated(0.13) benign(0.03) TCGA-UC-A7PF-01 5 179688761 179688761 G A MAPK9 Missense_Mutation p.H125Y 0.27 deleterious(0) probably_damaging(1) TCGA-UC-A7PF-01 5 33616032 33616032 C T ADAMTS12 Silent p.G763G 0.40 TCGA-UC-A7PF-01 5 36972051 36972051 G C NIPBL Missense_Mutation p.G259A 0.33 deleterious_low_confidence(0.01) benign(0.08) TCGA-UC-A7PF-01 5 40998766 40998766 G A MROH2B Silent p.L1533L 0.35 TCGA-UC-A7PF-01 5 5140861 5140861 G A ADAMTS16 Missense_Mutation p.G53S 0.41 tolerated_low_confidence(0.14) benign(0.011) TCGA-UC-A7PF-01 5 5460805 5460805 C G KIAA0947 Missense_Mutation p.S453C 0.40 deleterious(0.01) possibly_damaging(0.855) TCGA-UC-A7PF-01 5 64965670 64965670 C T SGTB 3'UTR 0.34 TCGA-UC-A7PF-01 5 74323306 74323306 C G GCNT4 3'UTR 0.23 TCGA-UC-A7PF-01 5 74323661 74323661 C T GCNT4 3'UTR 0.29 TCGA-UC-A7PF-01 5 79029018 79029018 C T CMYA5 Missense_Mutation p.T1477I 0.40 benign(0.145) TCGA-UC-A7PF-01 5 81614027 81614027 C T ATP6AP1L Nonsense_Mutation p.R195* 0.17 TCGA-UC-A7PF-01 5 82876341 82876341 C T VCAN 3'UTR 0.24 TCGA-UC-A7PF-01 5 94031039 94031039 G T ANKRD32 3'UTR 0.24 TCGA-UC-A7PF-01 5 95255153 95255153 C G ELL2 Missense_Mutation p.D98H 0.27 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PF-01 6 107387317 107387317 A T BEND3 3'UTR 0.69 TCGA-UC-A7PF-01 6 107474473 107474473 C G PDSS2 3'UTR 0.33 TCGA-UC-A7PF-01 6 108191378 108191378 C T SEC63 3'UTR 0.33 TCGA-UC-A7PF-01 6 112029209 112029209 C A FYN Missense_Mutation p.W120L 0.23 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PF-01 6 117023290 117023290 G A KPNA5 Missense_Mutation p.E182K 0.26 tolerated(0.06) benign(0.034) TCGA-UC-A7PF-01 6 117023296 117023296 G A KPNA5 Missense_Mutation p.E184K 0.25 tolerated(0.35) probably_damaging(0.994) TCGA-UC-A7PF-01 6 118786573 118786573 G C CEP85L Missense_Mutation p.Q808E 0.33 deleterious(0) probably_damaging(0.997) TCGA-UC-A7PF-01 6 142691547 142691547 C G GPR126 Nonsense_Mutation p.S229* 0.27 TCGA-UC-A7PF-01 6 147660514 147660514 G C STXBP5 Missense_Mutation p.D750H 0.19 tolerated(0.06) benign(0.001) TCGA-UC-A7PF-01 6 152576212 152576212 C G SYNE1 Missense_Mutation p.D6425H 0.32 possibly_damaging(0.907) TCGA-UC-A7PF-01 6 155114064 155114064 C T SCAF8 Silent p.V143V 0.28 TCGA-UC-A7PF-01 6 168352621 168352621 G A MLLT4 Silent p.E1522E 0.22 TCGA-UC-A7PF-01 6 170043795 170043795 G A WDR27 Missense_Mutation p.S582L 0.23 deleterious(0.04) benign(0.295) TCGA-UC-A7PF-01 6 170151627 170151627 G A TCTE3 5'UTR 0.29 TCGA-UC-A7PF-01 6 22294655 22294655 C G PRL Missense_Mutation p.E63Q 0.31 tolerated(0.09) possibly_damaging(0.572) TCGA-UC-A7PF-01 6 26240851 26240851 G C HIST1H4F Silent p.V66V 0.31 TCGA-UC-A7PF-01 6 2779572 2779572 G A WRNIP1 Silent p.L444L 0.41 TCGA-UC-A7PF-01 6 28540339 28540339 G A SCAND3 Silent p.F1109F 0.20 TCGA-UC-A7PF-01 6 30457295 30457295 C T HLA-E 5'UTR 0.32 TCGA-UC-A7PF-01 6 30920820 30920820 G A DPCR1 Missense_Mutation p.G1370S 0.41 deleterious(0) benign(0.006) TCGA-UC-A7PF-01 6 31129531 31129531 C T TCF19 Silent p.L182L 0.29 TCGA-UC-A7PF-01 6 31238976 31238976 G C HLA-C Missense_Mutation p.Q165E 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-UC-A7PF-01 6 31474941 31474941 G A MICB Silent p.Q252Q 0.24 TCGA-UC-A7PF-01 6 31778159 31778159 C G HSPA1L Missense_Mutation p.D531H 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-UC-A7PF-01 6 32096939 32096939 C A FKBPL Nonsense_Mutation p.E207* 0.26 TCGA-UC-A7PF-01 6 32096940 32096940 C T FKBPL Silent p.K206K 0.26 TCGA-UC-A7PF-01 6 32097143 32097143 C T FKBPL Missense_Mutation p.E139K 0.22 tolerated(0.22) benign(0.145) TCGA-UC-A7PF-01 6 32906570 32906570 G C HLA-DMB Silent p.L76L 0.20 TCGA-UC-A7PF-01 6 32906678 32906678 G A HLA-DMB Silent p.F40F 0.20 TCGA-UC-A7PF-01 6 33655086 33655086 C T ITPR3 Silent p.I2053I 0.27 TCGA-UC-A7PF-01 6 33655092 33655092 C T ITPR3 Silent p.I2055I 0.27 TCGA-UC-A7PF-01 6 36454677 36454677 G C KCTD20 Missense_Mutation p.E329Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PF-01 6 36456569 36456569 G C KCTD20 3'UTR 0.21 TCGA-UC-A7PF-01 6 39895145 39895145 G A MOCS1 Missense_Mutation p.S58F 0.50 deleterious(0) probably_damaging(0.997) TCGA-UC-A7PF-01 6 42646299 42646299 G A UBR2 Missense_Mutation p.G1501S 0.33 tolerated(0.21) benign(0.011) TCGA-UC-A7PF-01 6 52696763 52696763 C T GSTA5 Silent p.L184L 0.26 TCGA-UC-A7PF-01 6 70918355 70918355 G C COL19A1 3'UTR 0.33 TCGA-UC-A7PF-01 6 75912466 75912466 C T COL12A1 Missense_Mutation p.A15T 0.18 benign(0.026) TCGA-UC-A7PF-01 6 75953513 75953513 G A COX7A2 Missense_Mutation p.P12S 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.65) TCGA-UC-A7PF-01 6 90576285 90576285 G A CASP8AP2 RNA 0.29 TCGA-UC-A7PF-01 6 90576585 90576585 G A CASP8AP2 RNA 0.19 TCGA-UC-A7PF-01 6 96996144 96996144 G C UFL1 Missense_Mutation p.E503Q 0.20 tolerated(0.2) benign(0.175) TCGA-UC-A7PF-01 6 97711270 97711270 C A MMS22L Nonsense_Mutation p.E295* 0.28 TCGA-UC-A7PF-01 6 99285889 99285889 C T POU3F2 3'UTR 0.38 TCGA-UC-A7PF-01 7 100391775 100391775 C G ZAN Intron 0.22 TCGA-UC-A7PF-01 7 100391822 100391822 C T ZAN Intron 0.26 TCGA-UC-A7PF-01 7 111366615 111366615 C G DOCK4 3'Flank 0.32 TCGA-UC-A7PF-01 7 123388786 123388786 C T WASL Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) unknown(0) TCGA-UC-A7PF-01 7 127326700 127326700 C G SND1 Missense_Mutation p.Q38E 0.33 tolerated(0.11) benign(0.168) TCGA-UC-A7PF-01 7 134849900 134849900 G A TMEM140 3'UTR 0.43 TCGA-UC-A7PF-01 7 135418704 135418704 C T FAM180A 3'UTR 0.43 TCGA-UC-A7PF-01 7 151877100 151877100 G A KMT2C Nonsense_Mutation p.Q2421* 0.44 TCGA-UC-A7PF-01 7 20762743 20762743 G C ABCB5 Silent p.L842L 0.28 TCGA-UC-A7PF-01 7 22896271 22896271 C T SNORD93 RNA 0.38 TCGA-UC-A7PF-01 7 23545155 23545155 C T TRA2A 3'UTR 0.18 TCGA-UC-A7PF-01 7 33136969 33136969 G T RP9 Missense_Mutation p.R107S 0.22 deleterious(0) benign(0.048) TCGA-UC-A7PF-01 7 45758714 45758714 G T ADCY1 3'UTR 0.19 TCGA-UC-A7PF-01 7 47924193 47924193 C T PKD1L1 Intron 0.27 TCGA-UC-A7PF-01 7 48312496 48312496 C T ABCA13 Missense_Mutation p.S1078F 0.24 probably_damaging(0.976) TCGA-UC-A7PF-01 7 50471567 50471567 C T IKZF1 3'Flank 0.40 TCGA-UC-A7PF-01 7 5167329 5167329 C G ZNF890P RNA 0.21 TCGA-UC-A7PF-01 7 5342455 5342455 C G SLC29A4 Nonsense_Mutation p.S493* 0.22 TCGA-UC-A7PF-01 7 71252248 71252248 G C CALN1 3'UTR 0.19 TCGA-UC-A7PF-01 7 8127905 8127905 C T GLCCI1 3'UTR 0.35 TCGA-UC-A7PF-01 7 82580735 82580735 C T PCLO Missense_Mutation p.G3057R 0.29 unknown(0) TCGA-UC-A7PF-01 7 87179871 87179871 C T ABCB1 Silent p.S379S 0.31 TCGA-UC-A7PF-01 7 92235329 92235329 C G CDK6 3'UTR 0.26 TCGA-UC-A7PF-01 7 92462443 92462443 C T CDK6 Silent p.L65L 0.24 TCGA-UC-A7PF-01 7 92732753 92732753 C T SAMD9 Missense_Mutation p.M886I 0.29 deleterious(0) probably_damaging(0.919) TCGA-UC-A7PF-01 7 93519487 93519487 G T TFPI2 Missense_Mutation p.T78N 0.32 deleterious(0.04) probably_damaging(0.937) TCGA-UC-A7PF-01 7 94035559 94035559 C T COL1A2 Intron 0.29 TCGA-UC-A7PF-01 7 95818668 95818668 C T SLC25A13 Missense_Mutation p.E291K 0.22 tolerated(0.08) benign(0.091) TCGA-UC-A7PF-01 7 97939870 97939870 G A BAIAP2L1 Missense_Mutation p.S281L 0.25 tolerated(0.28) benign(0.005) TCGA-UC-A7PF-01 8 100712049 100712049 C T VPS13B Nonsense_Mutation p.Q2140* 0.31 TCGA-UC-A7PF-01 8 109797062 109797062 C T TMEM74 Missense_Mutation p.G89E 0.30 tolerated(1) benign(0.015) TCGA-UC-A7PF-01 8 11223212 11223212 G C C8orf12 5'Flank 0.19 TCGA-UC-A7PF-01 8 124658171 124658171 C T KLHL38 Silent p.V518V 0.29 TCGA-UC-A7PF-01 8 145151377 145151377 C G CYC1 Silent p.L197L 0.21 TCGA-UC-A7PF-01 8 23021422 23021422 C T TNFRSF10D Silent p.P9P 0.50 TCGA-UC-A7PF-01 8 28748030 28748030 C G HMBOX1 5'UTR 0.31 TCGA-UC-A7PF-01 8 29025072 29025072 T G KIF13B Missense_Mutation p.M326L 0.39 deleterious(0) probably_damaging(0.993) TCGA-UC-A7PF-01 8 30416465 30416465 G T RBPMS Nonstop_Mutation p.*197Lext*54 0.20 TCGA-UC-A7PF-01 8 30701580 30701580 C G TEX15 Missense_Mutation p.E1652Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PF-01 8 37707383 37707383 A G BRF2 5'UTR 0.12 TCGA-UC-A7PF-01 8 37732367 37732367 C T RAB11FIP1 Missense_Mutation p.E430K 0.30 deleterious(0) probably_damaging(0.982) TCGA-UC-A7PF-01 8 42294923 42294923 C T SLC20A2 Silent p.E369E 0.20 TCGA-UC-A7PF-01 8 58192372 58192372 C T LINC00588 RNA 0.36 TCGA-UC-A7PF-01 8 67577840 67577840 C G VCPIP1 Missense_Mutation p.E452Q 0.19 tolerated(0.35) benign(0.372) TCGA-UC-A7PF-01 8 73849309 73849309 G C KCNB2 Missense_Mutation p.E573D 0.22 deleterious_low_confidence(0.04) probably_damaging(0.911) TCGA-UC-A7PF-01 8 74692589 74692589 C A RP11-463D19.2 Intron 0.25 TCGA-UC-A7PF-01 8 75765626 75765626 C G PI15 3'UTR 0.32 TCGA-UC-A7PF-01 8 76478578 76478578 G C HNF4G 3'UTR 0.24 TCGA-UC-A7PF-01 8 77766172 77766172 G A ZFHX4 Missense_Mutation p.E2339K 0.30 probably_damaging(0.98) TCGA-UC-A7PF-01 8 88885075 88885075 G A DCAF4L2 Silent p.F375F 0.20 TCGA-UC-A7PF-01 8 95738627 95738627 G A DPY19L4 Missense_Mutation p.E29K 0.29 tolerated(0.14) benign(0.001) TCGA-UC-A7PF-01 8 96167999 96167999 G C PLEKHF2 3'UTR 0.20 TCGA-UC-A7PF-01 9 100616545 100616545 G C FOXE1 Missense_Mutation p.E117Q 0.18 deleterious(0) possibly_damaging(0.844) TCGA-UC-A7PF-01 9 103348044 103348044 C T MURC Intron 0.35 TCGA-UC-A7PF-01 9 112003954 112003954 C T EPB41L4B Intron 0.32 TCGA-UC-A7PF-01 9 114296561 114296561 G A ZNF483 Missense_Mutation p.E217K 0.33 deleterious(0.01) benign(0.292) TCGA-UC-A7PF-01 9 115095903 115095903 A G PTBP3 5'Flank 0.27 TCGA-UC-A7PF-01 9 124074512 124074512 G A GSN Intron 0.17 TCGA-UC-A7PF-01 9 125613648 125613648 G A RC3H2 Missense_Mutation p.S1062L 0.17 deleterious(0.01) probably_damaging(0.942) TCGA-UC-A7PF-01 9 130940030 130940030 C T CIZ1 Missense_Mutation p.G545R 0.33 deleterious(0) probably_damaging(0.997) TCGA-UC-A7PF-01 9 132084251 132084251 C T C9orf106 RNA 0.22 TCGA-UC-A7PF-01 9 133750392 133750392 C G ABL1 Missense_Mutation p.P427R 0.30 deleterious(0) probably_damaging(1) TCGA-UC-A7PF-01 9 135205465 135205465 G C SETX Nonsense_Mutation p.S507* 0.32 TCGA-UC-A7PF-01 9 138377333 138377333 G A PPP1R26 Missense_Mutation p.R326H 0.29 tolerated(0.24) benign(0.002) TCGA-UC-A7PF-01 9 138590275 138590275 T A SOHLH1 Missense_Mutation p.Q82L 0.26 deleterious(0.03) benign(0.019) TCGA-UC-A7PF-01 9 15510234 15510234 G C PSIP1 5'UTR 0.19 TCGA-UC-A7PF-01 9 21166471 21166471 G A IFNA21 Silent p.I47I 0.24 TCGA-UC-A7PF-01 9 23690804 23690804 C T ELAVL2 3'UTR 0.26 TCGA-UC-A7PF-01 9 32632175 32632175 G C TAF1L Missense_Mutation p.Q1135E 0.24 tolerated(0.14) benign(0.015) TCGA-UC-A7PF-01 9 35111348 35111348 C T FAM214B 5'UTR 0.24 TCGA-UC-A7PF-01 9 35404950 35404950 G C UNC13B 3'UTR 0.20 TCGA-UC-A7PF-01 9 4663804 4663804 C A PPAPDC2 3'UTR 0.03 TCGA-UC-A7PF-01 9 74480101 74480101 G C ABHD17B Intron 0.33 TCGA-UC-A7PF-01 9 74480330 74480330 G A ABHD17B Intron 0.27 TCGA-UC-A7PF-01 9 86322615 86322615 C T UBQLN1 5'UTR 0.12 TCGA-UC-A7PF-01 9 87570324 87570324 C T NTRK2 Silent p.F688F 0.22 TCGA-UC-A7PF-01 9 88967805 88967805 C G ZCCHC6 Missense_Mutation p.D104H 0.27 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-UC-A7PF-01 9 95148528 95148528 G T OGN Silent p.S227S 0.21 TCGA-UC-A7PF-01 9 96421802 96421802 G C PHF2 Missense_Mutation p.E417Q 0.37 deleterious(0.02) unknown(0) TCGA-UC-A7PF-01 9 98685658 98685658 G A ERCC6L2 Missense_Mutation p.M521I 0.14 tolerated(0.09) probably_damaging(0.998) TCGA-UC-A7PF-01 9 99589432 99589432 G A ZNF782 Silent p.F58F 0.23 TCGA-UC-A7PF-01 X 100496800 100496800 G C DRP2 Missense_Mutation p.E235Q 0.17 tolerated(0.36) benign(0.116) TCGA-UC-A7PF-01 X 105132304 105132304 C T NRK Silent p.L90L 0.17 TCGA-UC-A7PF-01 X 107939778 107939778 C G COL4A5 3'UTR 0.17 TCGA-UC-A7PF-01 X 112058936 112058936 G A AMOT Missense_Mutation p.H348Y 0.23 unknown(0) TCGA-UC-A7PF-01 X 118378218 118378218 G A PGRMC1 3'UTR 0.21 TCGA-UC-A7PF-01 X 123540290 123540290 C A TENM1 Missense_Mutation p.V1678F 0.06 deleterious(0) possibly_damaging(0.849) TCGA-UC-A7PF-01 X 130223702 130223702 G A ARHGAP36 3'UTR 0.18 TCGA-UC-A7PF-01 X 1315002 1315002 T C CRLF2 Missense_Mutation p.E220G 0.08 deleterious(0.01) benign(0.067) TCGA-UC-A7PF-01 X 131513095 131513095 G A MBNL3 3'UTR 0.21 TCGA-UC-A7PF-01 X 132351100 132351100 G A TFDP3 Silent p.D396D 0.17 TCGA-UC-A7PF-01 X 133379619 133379619 G A CCDC160 Missense_Mutation p.M263I 0.20 tolerated(0.16) benign(0.043) TCGA-UC-A7PF-01 X 134022060 134022060 G C MOSPD1 3'UTR 0.15 TCGA-UC-A7PF-01 X 134427773 134427773 C T ZNF75D Silent p.L98L 0.24 TCGA-UC-A7PF-01 X 134989157 134989157 C T SAGE1 Missense_Mutation p.S270L 0.12 tolerated(0.1) probably_damaging(0.99) TCGA-UC-A7PF-01 X 135289174 135289174 G A FHL1 Splice_Site p.X53_splice 0.29 TCGA-UC-A7PF-01 X 136112351 136112351 C T GPR101 Missense_Mutation p.E495K 0.22 deleterious(0.03) benign(0.073) TCGA-UC-A7PF-01 X 148077126 148077126 G C AFF2 3'UTR 0.13 TCGA-UC-A7PF-01 X 150348749 150348749 G A GPR50 Missense_Mutation p.E232K 0.18 tolerated(0.2) possibly_damaging(0.823) TCGA-UC-A7PF-01 X 152106656 152106656 G T ZNF185 Missense_Mutation p.R418M 0.29 deleterious(0.04) probably_damaging(0.917) TCGA-UC-A7PF-01 X 152847735 152847735 A G ATP2B3 3'UTR 0.26 TCGA-UC-A7PF-01 X 153060095 153060095 C T SSR4 Intron 0.20 TCGA-UC-A7PF-01 X 153524225 153524225 G A TKTL1 Missense_Mutation p.E5K 0.20 tolerated_low_confidence(0.06) unknown(0) TCGA-UC-A7PF-01 X 153715726 153715726 G A SLC10A3 3'UTR 0.25 TCGA-UC-A7PF-01 X 18668690 18668690 C T CDKL5 Silent p.F986F 0.12 TCGA-UC-A7PF-01 X 21627571 21627571 G A CNKSR2 Missense_Mutation p.R843Q 0.19 deleterious(0) probably_damaging(0.994) TCGA-UC-A7PF-01 X 25028374 25028374 C T ARX Intron 0.26 TCGA-UC-A7PF-01 X 27998204 27998204 G A DCAF8L1 Silent p.L416L 0.20 TCGA-UC-A7PF-01 X 31190490 31190490 C G DMD Missense_Mutation p.D3457H 0.21 probably_damaging(0.934) TCGA-UC-A7PF-01 X 37514938 37514938 C T LANCL3 Intron 0.24 TCGA-UC-A7PF-01 X 46719528 46719528 C A RP2 Missense_Mutation p.L292M 0.14 deleterious(0.05) possibly_damaging(0.666) TCGA-UC-A7PF-01 X 47774737 47774737 C A ZNF81 Missense_Mutation p.S231Y 0.20 deleterious(0) benign(0.326) TCGA-UC-A7PF-01 X 47775374 47775374 C T ZNF81 Silent p.I443I 0.26 TCGA-UC-A7PF-01 X 48620154 48620154 G C GLOD5 5'UTR 0.16 TCGA-UC-A7PF-01 X 48826076 48826076 G A KCND1 Silent p.I201I 0.33 TCGA-UC-A7PF-01 X 49088168 49088168 G A CACNA1F Missense_Mutation p.R83W 0.13 deleterious(0) probably_damaging(0.995) TCGA-UC-A7PF-01 X 50054313 50054313 C G CCNB3 Missense_Mutation p.F1048L 0.17 tolerated(0.32) benign(0.153) TCGA-UC-A7PF-01 X 50130629 50130629 C T DGKK RNA 0.22 TCGA-UC-A7PF-01 X 51641680 51641680 G A MAGED1 Silent p.V651V 0.24 TCGA-UC-A7PF-01 X 53457907 53457907 C T RIBC1 Missense_Mutation p.H371Y 0.19 tolerated(1) benign(0.01) TCGA-UC-A7PF-01 X 54278033 54278033 G A WNK3 Missense_Mutation p.H819Y 0.28 deleterious(0.02) possibly_damaging(0.589) TCGA-UC-A7PF-01 X 54496559 54496570 CAGGCCGGTGGG - FGD1 In_Frame_Del p.P327_G331delinsR 0.20 TCGA-UC-A7PF-01 X 54955312 54955312 A G TRO Missense_Mutation p.T719A 0.08 tolerated(0.15) unknown(0) TCGA-UC-A7PF-01 X 55514409 55514409 G A USP51 Nonsense_Mutation p.Q322* 0.26 TCGA-UC-A7PF-01 X 57934332 57934333 - TAGGG ZXDA 3'UTR 0.09 TCGA-UC-A7PF-01 X 57936890 57936890 G A ZXDA 5'UTR 0.24 TCGA-UC-A7PF-01 X 62944444 62944444 C T ARHGEF9 Missense_Mutation p.E53K 0.17 tolerated(0.68) benign(0.017) TCGA-UC-A7PF-01 X 64732513 64732513 C T LAS1L 3'UTR 0.27 TCGA-UC-A7PF-01 X 64749560 64749560 G A LAS1L Missense_Mutation p.S238L 0.22 tolerated(0.46) benign(0) TCGA-UC-A7PF-01 X 69263383 69263383 G A AWAT2 Silent p.L139L 0.19 TCGA-UC-A7PF-01 X 70461085 70461085 G A ZMYM3 Silent p.L1304L 0.13 TCGA-UC-A7PF-01 X 70828885 70828885 C G ACRC Missense_Mutation p.S510C 0.14 unknown(0) TCGA-UC-A7PF-01 X 71349694 71349694 C T RGAG4 Missense_Mutation p.R566Q 0.22 tolerated_low_confidence(0.09) unknown(0) TCGA-UC-A7PF-01 X 72224364 72224364 C T PABPC1L2B 3'UTR 0.12 TCGA-UC-A7PF-01 X 72903592 72903592 C T CHIC1 3'UTR 0.29 TCGA-UC-A7PF-01 X 73043746 73043746 G A XIST RNA 0.31 TCGA-UC-A7PF-01 X 73064199 73064199 G A XIST RNA 0.23 TCGA-UC-A7PF-01 X 73072124 73072124 G A XIST RNA 0.23 TCGA-UC-A7PF-01 X 73960815 73960815 G A KIAA2022 Nonsense_Mutation p.Q1193* 0.16 TCGA-UC-A7PF-01 X 8434034 8434034 G C VCX3B Missense_Mutation p.E117D 0.31 tolerated(0.1) unknown(0) TCGA-UC-A7PF-01 X 86873030 86873030 C T KLHL4 Missense_Mutation p.L275F 0.24 deleterious(0) benign(0.041) TCGA-UC-A7PF-01 X 90690973 90690973 C T PABPC5 Silent p.L133L 0.18 TCGA-UC-A7PF-01 X 99662728 99662728 G A PCDH19 Nonsense_Mutation p.Q290* 0.22 TCGA-UC-A7PF-01 X 99839896 99839896 G C TNMD 5'UTR 0.14 TCGA-UC-A7PG-01 10 105382285 105382285 C T SH3PXD2A Intron 0.19 TCGA-UC-A7PG-01 10 12291686 12291686 A G CDC123 Missense_Mutation p.D318G 0.25 deleterious(0) possibly_damaging(0.893) TCGA-UC-A7PG-01 10 127458991 127458991 G C MMP21 Silent p.L383L 0.20 TCGA-UC-A7PG-01 10 127503606 127503606 C G UROS Missense_Mutation p.E81Q 0.12 tolerated(0.05) benign(0.065) TCGA-UC-A7PG-01 10 129903970 129903970 G C MKI67 Missense_Mutation p.S2045C 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-UC-A7PG-01 10 13043478 13043478 C T CCDC3 Silent p.L31L 0.20 TCGA-UC-A7PG-01 10 135020796 135020796 G C KNDC1 Missense_Mutation p.Q1245H 0.15 tolerated(0.09) benign(0.017) TCGA-UC-A7PG-01 10 15183485 15183485 G A NMT2 Missense_Mutation p.S61F 0.22 deleterious(0.01) possibly_damaging(0.877) TCGA-UC-A7PG-01 10 27538788 27538788 G C RP11-85G18.6 Intron 0.19 TCGA-UC-A7PG-01 10 27538804 27538804 G A RP11-85G18.6 Intron 0.16 TCGA-UC-A7PG-01 10 44112912 44112912 G A ZNF485 3'UTR 0.17 TCGA-UC-A7PG-01 10 45602243 45602243 C T RSU1P2 RNA 0.22 TCGA-UC-A7PG-01 10 45659465 45659465 G A MIR3156-1 RNA 0.15 TCGA-UC-A7PG-01 10 51769208 51769208 G A AGAP6 Silent p.Q441Q 0.17 TCGA-UC-A7PG-01 10 55780164 55780164 C T PCDH15 Missense_Mutation p.D847N 0.26 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PG-01 10 71851674 71851674 G T H2AFY2 Missense_Mutation p.K147N 0.19 deleterious(0.02) benign(0.444) TCGA-UC-A7PG-01 10 74804807 74804807 C G P4HA1 Silent p.L360L 0.12 TCGA-UC-A7PG-01 10 7608093 7608093 G A ITIH5 Silent p.L809L 0.15 TCGA-UC-A7PG-01 10 95790987 95790987 G T PLCE1 Nonsense_Mutation p.E62* 0.40 TCGA-UC-A7PG-01 10 99376540 99376540 C G MORN4 Missense_Mutation p.E63Q 0.28 deleterious(0.01) possibly_damaging(0.728) TCGA-UC-A7PG-01 11 10874587 10874587 G A ZBED5 Missense_Mutation p.L636F 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-UC-A7PG-01 11 113281332 113281332 C T DRD2 3'UTR 0.29 TCGA-UC-A7PG-01 11 113631025 113631025 G A ZW10 Silent p.L162L 0.17 TCGA-UC-A7PG-01 11 128359209 128359209 C A ETS1 Nonsense_Mutation p.E171* 0.20 TCGA-UC-A7PG-01 11 134215009 134215009 C T GLB1L2 Silent p.L145L 0.24 TCGA-UC-A7PG-01 11 18232043 18232043 C G RP11-113D6.10 3'UTR 0.10 TCGA-UC-A7PG-01 11 2169069 2169069 G A INS-IGF2 Intron 0.14 TCGA-UC-A7PG-01 11 36598911 36598911 C T RAG1 3'UTR 0.17 TCGA-UC-A7PG-01 11 46880647 46880647 C G LRP4 Missense_Mutation p.E1869Q 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.815) TCGA-UC-A7PG-01 11 4703870 4703870 G C OR51E2 Missense_Mutation p.F24L 0.30 tolerated(0.5) benign(0.021) TCGA-UC-A7PG-01 11 5322817 5322817 G C OR51B4 Missense_Mutation p.F120L 0.28 tolerated(0.05) benign(0.049) TCGA-UC-A7PG-01 11 605650 605650 G C PHRF1 Missense_Mutation p.K459N 0.26 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 11 60609836 60609836 C T CCDC86 Missense_Mutation p.S80L 0.09 deleterious(0) possibly_damaging(0.744) TCGA-UC-A7PG-01 11 62677143 62677143 C T CHRM1 3'UTR 0.26 TCGA-UC-A7PG-01 11 6479075 6479075 C T TRIM3 Silent p.T122T 0.12 TCGA-UC-A7PG-01 11 67048949 67048949 G A ADRBK1 Missense_Mutation p.D223N 0.08 deleterious(0) probably_damaging(0.997) TCGA-UC-A7PG-01 11 67265144 67265144 C T PITPNM1 Missense_Mutation p.E597K 0.32 tolerated(0.18) benign(0.049) TCGA-UC-A7PG-01 11 71942167 71942167 C T INPPL1 Silent p.G477G 0.46 TCGA-UC-A7PG-01 11 73610237 73610237 C G PAAF1 Missense_Mutation p.S110C 0.16 tolerated(0.08) benign(0.004) TCGA-UC-A7PG-01 11 76062585 76062585 C G PRKRIR Missense_Mutation p.E537Q 0.21 deleterious(0.02) possibly_damaging(0.899) TCGA-UC-A7PG-01 11 89773096 89773096 C T TRIM49C Silent p.I275I 0.11 TCGA-UC-A7PG-01 12 102793022 102793022 C T IGF1 3'UTR 0.10 TCGA-UC-A7PG-01 12 103352233 103352233 G A ASCL1 Missense_Mutation p.D71N 0.23 tolerated_low_confidence(0.17) possibly_damaging(0.555) TCGA-UC-A7PG-01 12 10560942 10560942 C T KLRC4 Missense_Mutation p.R109K 0.11 tolerated(0.11) benign(0.004) TCGA-UC-A7PG-01 12 109495872 109495872 C G USP30 Nonsense_Mutation p.S112* 0.17 TCGA-UC-A7PG-01 12 113587681 113587681 G A CCDC42B Missense_Mutation p.E7K 0.15 tolerated(0.06) benign(0.027) TCGA-UC-A7PG-01 12 121161065 121161065 G A UNC119B 3'UTR 0.26 TCGA-UC-A7PG-01 12 122255744 122255744 G C SETD1B Missense_Mutation p.E1075Q 0.15 unknown(0) TCGA-UC-A7PG-01 12 122257309 122257309 G C SETD1B Splice_Site p.X1097_splice 0.19 TCGA-UC-A7PG-01 12 122763378 122763378 G A CLIP1 Nonsense_Mutation p.Q1293* 0.26 TCGA-UC-A7PG-01 12 29757135 29757135 G A TMTC1 Missense_Mutation p.A409V 0.27 deleterious(0) probably_damaging(0.997) TCGA-UC-A7PG-01 12 3806134 3806134 C G EFCAB4B Missense_Mutation p.R11T 0.11 deleterious_low_confidence(0.05) benign(0.178) TCGA-UC-A7PG-01 12 49414500 49414500 C T KMT2D 3'UTR 0.14 TCGA-UC-A7PG-01 12 49433511 49433511 C T KMT2D Missense_Mutation p.R2681Q 0.12 probably_damaging(0.929) TCGA-UC-A7PG-01 12 51135251 51135251 G C DIP2B Silent p.L1469L 0.16 TCGA-UC-A7PG-01 12 53038989 53038989 G A KRT2 Silent p.G578G 0.12 TCGA-UC-A7PG-01 12 53446260 53446260 G A TENC1 Missense_Mutation p.R79K 0.22 tolerated(0.93) benign(0.019) TCGA-UC-A7PG-01 12 56492340 56492340 G C ERBB3 Missense_Mutation p.Q891H 0.14 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PG-01 12 56493777 56493777 C T ERBB3 Silent p.L1031L 0.16 TCGA-UC-A7PG-01 12 56495356 56495356 C A ERBB3 Silent p.L1182L 0.23 TCGA-UC-A7PG-01 12 56496149 56496152 CTTC TTT ERBB3 3'UTR 0.23 TCGA-UC-A7PG-01 12 56498422 56498422 C G PA2G4 5'UTR 0.32 TCGA-UC-A7PG-01 12 6861204 6861204 G A MLF2 Missense_Mutation p.H23Y 0.11 deleterious(0) possibly_damaging(0.852) TCGA-UC-A7PG-01 12 69202048 69202048 G A MDM2 5'UTR 0.22 TCGA-UC-A7PG-01 12 80998843 80998843 G C PTPRQ Missense_Mutation p.D1535H 0.45 deleterious(0) probably_damaging(0.951) TCGA-UC-A7PG-01 12 91449592 91449592 C T KERA Missense_Mutation p.R156K 0.14 tolerated(1) benign(0.001) TCGA-UC-A7PG-01 12 96051695 96051695 G C NTN4 3'UTR 0.09 TCGA-UC-A7PG-01 12 96104318 96104318 C T NTN4 Missense_Mutation p.D361N 0.19 tolerated(1) benign(0.003) TCGA-UC-A7PG-01 13 111287908 111287908 C T CARKD Missense_Mutation p.R249C 0.33 tolerated(0.05) benign(0.052) TCGA-UC-A7PG-01 13 37393582 37393582 C T RFXAP Missense_Mutation p.P30S 0.58 tolerated_low_confidence(0.26) benign(0.002) TCGA-UC-A7PG-01 13 72441060 72441060 G C DACH1 5'UTR 0.30 TCGA-UC-A7PG-01 13 73401220 73401220 G A PIBF1 Missense_Mutation p.M293I 0.24 tolerated(0.25) benign(0) TCGA-UC-A7PG-01 13 75866319 75866319 C T TBC1D4 Silent p.E1135E 0.26 TCGA-UC-A7PG-01 14 102028683 102028683 G C DIO3 Missense_Mutation p.E284Q 0.09 deleterious(0.01) possibly_damaging(0.792) TCGA-UC-A7PG-01 14 103806858 103806858 C T EIF5 Missense_Mutation p.S389F 0.09 deleterious(0.01) probably_damaging(0.948) TCGA-UC-A7PG-01 14 106173525 106173525 C T IGHA1 Missense_Mutation p.V348M 0.08 deleterious(0.04) possibly_damaging(0.784) TCGA-UC-A7PG-01 14 20850170 20850170 C T TEP1 Silent p.P1442P 0.35 TCGA-UC-A7PG-01 14 21840080 21840080 C G SUPT16H Missense_Mutation p.E95Q 0.24 tolerated(0.07) benign(0.097) TCGA-UC-A7PG-01 14 50798931 50798931 C G CDKL1 Intron 0.19 TCGA-UC-A7PG-01 14 55312568 55312568 G A GCH1 Nonsense_Mutation p.Q182* 0.24 TCGA-UC-A7PG-01 14 64537402 64537402 G A SYNE2 Missense_Mutation p.E3491K 0.24 possibly_damaging(0.631) TCGA-UC-A7PG-01 14 71374675 71374675 C G PCNX Silent p.L36L 0.17 TCGA-UC-A7PG-01 14 75143318 75143318 C T AREL1 Missense_Mutation p.D207N 0.26 tolerated(0.33) possibly_damaging(0.767) TCGA-UC-A7PG-01 14 99977846 99977846 G A CCDC85C 3'UTR 0.29 TCGA-UC-A7PG-01 14 99978147 99978147 G C CCDC85C 3'UTR 0.16 TCGA-UC-A7PG-01 15 20657777 20657777 C T HERC2P3 RNA 0.05 TCGA-UC-A7PG-01 15 23686643 23686643 C G GOLGA6L2 Missense_Mutation p.E327Q 0.11 possibly_damaging(0.607) TCGA-UC-A7PG-01 15 25924168 25924168 C T ATP10A 3'UTR 0.25 TCGA-UC-A7PG-01 15 38617002 38617002 G A SPRED1 Missense_Mutation p.D139N 0.18 tolerated(0.05) benign(0.001) TCGA-UC-A7PG-01 15 44912561 44912561 G A SPG11 Silent p.L887L 0.18 TCGA-UC-A7PG-01 15 45409721 45409721 G A DUOXA1 Silent p.L482L 0.12 TCGA-UC-A7PG-01 15 45413402 45413402 C G DUOXA1 Missense_Mutation p.E75Q 0.11 tolerated(0.05) possibly_damaging(0.636) TCGA-UC-A7PG-01 15 45413415 45413415 C G DUOXA1 Silent p.V70V 0.10 TCGA-UC-A7PG-01 15 55632854 55632854 G C PIGB Missense_Mutation p.Q297H 0.15 tolerated(0.3) benign(0.049) TCGA-UC-A7PG-01 15 56390386 56390386 C T RFX7 Missense_Mutation p.E334K 0.11 deleterious(0.03) possibly_damaging(0.574) TCGA-UC-A7PG-01 15 60648191 60648191 T C ANXA2 Missense_Mutation p.K170R 0.32 deleterious(0.05) benign(0.014) TCGA-UC-A7PG-01 15 71481287 71481287 C T THSD4 Intron 0.17 TCGA-UC-A7PG-01 15 75647302 75647302 C T NEIL1 Intron 0.18 TCGA-UC-A7PG-01 15 78882957 78882957 G A CHRNA5 Missense_Mutation p.M408I 0.20 deleterious(0.01) benign(0.063) TCGA-UC-A7PG-01 15 80889483 80889483 C G ARNT2 3'UTR 0.16 TCGA-UC-A7PG-01 15 82574864 82574864 G A FAM154B Missense_Mutation p.E220K 0.32 deleterious(0.01) benign(0.41) TCGA-UC-A7PG-01 15 84690225 84690225 G A ADAMTSL3 Missense_Mutation p.R1446H 0.29 tolerated(0.5) benign(0.032) TCGA-UC-A7PG-01 15 89859939 89859939 C T POLG 3'UTR 0.13 TCGA-UC-A7PG-01 15 92459525 92459525 C T SLCO3A1 Silent p.P161P 0.16 TCGA-UC-A7PG-01 15 93518169 93518169 G C CHD2 Missense_Mutation p.D856H 0.09 deleterious(0) possibly_damaging(0.84) TCGA-UC-A7PG-01 16 1486459 1486459 C T CCDC154 Missense_Mutation p.E501K 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-UC-A7PG-01 16 1812857 1812857 C T MAPK8IP3 Missense_Mutation p.S582F 0.12 deleterious(0.02) probably_damaging(0.965) TCGA-UC-A7PG-01 16 19557210 19557210 G A CCP110 Missense_Mutation p.M925I 0.13 tolerated(0.11) possibly_damaging(0.888) TCGA-UC-A7PG-01 16 2166631 2166631 C A PKD1 Missense_Mutation p.A541S 0.16 benign(0.14) TCGA-UC-A7PG-01 16 22563711 22563711 G C RP11-368J21.3 RNA 0.06 TCGA-UC-A7PG-01 16 23693451 23693451 C G PLK1 Missense_Mutation p.I263M 0.16 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 16 24919398 24919398 G A SLC5A11 Silent p.P460P 0.15 TCGA-UC-A7PG-01 16 27078518 27078518 G C C16orf82 RNA 0.19 TCGA-UC-A7PG-01 16 28508162 28508162 G C APOBR Missense_Mutation p.R600S 0.12 tolerated(0.75) benign(0.402) TCGA-UC-A7PG-01 16 30536686 30536686 G A ZNF768 Missense_Mutation p.R259W 0.12 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-UC-A7PG-01 16 4790201 4790201 G A C16orf71 Silent p.Q108Q 0.15 TCGA-UC-A7PG-01 16 55806315 55806315 C T CES1P1 RNA 0.12 TCGA-UC-A7PG-01 16 55857486 55857486 C T CES1 Missense_Mutation p.R172H 0.09 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 16 57504918 57504918 C G POLR2C Missense_Mutation p.L239V 0.07 deleterious(0) probably_damaging(0.986) TCGA-UC-A7PG-01 16 70843808 70843808 G C HYDIN Missense_Mutation p.L4921V 0.18 possibly_damaging(0.801) TCGA-UC-A7PG-01 16 71890619 71890619 G A ATXN1L 3'UTR 0.23 TCGA-UC-A7PG-01 16 81388219 81388219 C T GAN Silent p.V164V 0.15 TCGA-UC-A7PG-01 16 90001669 90001669 C T TUBB3 Silent p.F270F 0.17 TCGA-UC-A7PG-01 17 10302923 10302923 C G MYH8 Missense_Mutation p.E1267Q 0.27 deleterious(0) possibly_damaging(0.878) TCGA-UC-A7PG-01 17 10614174 10614174 G A ADPRM Missense_Mutation p.A248T 0.25 tolerated(0.07) possibly_damaging(0.668) TCGA-UC-A7PG-01 17 3181760 3181760 G C OR3A2 Missense_Mutation p.S157C 0.19 tolerated(0.29) benign(0.151) TCGA-UC-A7PG-01 17 36633904 36633904 G T ARHGAP23 Nonsense_Mutation p.E735* 0.12 TCGA-UC-A7PG-01 17 37371088 37371088 C G STAC2 Missense_Mutation p.E267Q 0.20 deleterious(0.02) possibly_damaging(0.493) TCGA-UC-A7PG-01 17 39633102 39633102 G A KRT35 3'UTR 0.12 TCGA-UC-A7PG-01 17 39911906 39911906 C T JUP 3'UTR 0.15 TCGA-UC-A7PG-01 17 41199663 41199663 G T BRCA1 Missense_Mutation p.H1843N 0.16 tolerated(0.14) possibly_damaging(0.763) TCGA-UC-A7PG-01 17 41605434 41605434 A G ETV4 3'UTR 0.33 TCGA-UC-A7PG-01 17 45490215 45490215 G C EFCAB13 Missense_Mutation p.L785F 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-UC-A7PG-01 17 45560387 45560387 G A MRPL45P2 RNA 0.19 TCGA-UC-A7PG-01 17 48458857 48458857 G A LRRC59 3'UTR 0.11 TCGA-UC-A7PG-01 17 56584507 56584507 C G MTMR4 Missense_Mutation p.S280T 0.32 tolerated(0.27) benign(0.005) TCGA-UC-A7PG-01 17 59668312 59668312 C T NACA2 Missense_Mutation p.R77Q 0.14 tolerated(0.07) possibly_damaging(0.841) TCGA-UC-A7PG-01 17 5991386 5991386 G C WSCD1 Missense_Mutation p.K168N 0.23 deleterious(0.02) probably_damaging(1) TCGA-UC-A7PG-01 17 62796707 62796707 C T PLEKHM1P RNA 0.24 TCGA-UC-A7PG-01 17 685883 685883 G C RNMTL1 Missense_Mutation p.E89Q 0.27 tolerated(0.28) benign(0.265) TCGA-UC-A7PG-01 17 7339536 7339536 C G TMEM102 Missense_Mutation p.R80G 0.18 deleterious(0) possibly_damaging(0.669) TCGA-UC-A7PG-01 17 73836377 73836377 G T UNC13D Missense_Mutation p.L263M 0.25 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PG-01 17 78188932 78188932 C T SGSH Silent p.Q85Q 0.32 TCGA-UC-A7PG-01 17 7984289 7984289 C T ALOX12B Missense_Mutation p.R147Q 0.23 deleterious(0.03) possibly_damaging(0.89) TCGA-UC-A7PG-01 18 59221688 59221688 C G CDH20 Silent p.V722V 0.21 TCGA-UC-A7PG-01 18 67614123 67614123 C T CD226 Missense_Mutation p.E77K 0.17 tolerated(0.12) benign(0.048) TCGA-UC-A7PG-01 18 9577125 9577125 G A PPP4R1 Missense_Mutation p.S328L 0.22 deleterious(0.03) benign(0.009) TCGA-UC-A7PG-01 19 10247890 10247890 C T DNMT1 Missense_Mutation p.D1454N 0.13 deleterious(0.04) probably_damaging(0.948) TCGA-UC-A7PG-01 19 10742769 10742769 C T SLC44A2 Missense_Mutation p.R254C 0.21 deleterious(0) probably_damaging(0.992) TCGA-UC-A7PG-01 19 11283773 11283773 G A KANK2 Missense_Mutation p.R707C 0.27 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PG-01 19 11832468 11832468 C G ZNF823 3'UTR 0.30 TCGA-UC-A7PG-01 19 13059555 13059555 G A RAD23A Silent p.E176E 0.14 TCGA-UC-A7PG-01 19 13251693 13251693 G C NACC1 3'UTR 0.22 TCGA-UC-A7PG-01 19 1531774 1531774 C G PLK5 Silent p.L202L 0.17 TCGA-UC-A7PG-01 19 17302013 17302013 G A MYO9B Silent p.Q932Q 0.18 TCGA-UC-A7PG-01 19 18707478 18707478 G C CRLF1 Missense_Mutation p.I326M 0.12 deleterious(0.01) possibly_damaging(0.671) TCGA-UC-A7PG-01 19 18994989 18994989 G A CERS1 Missense_Mutation p.T166M 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-UC-A7PG-01 19 23836677 23836677 G C ZNF675 Nonsense_Mutation p.S353* 0.23 TCGA-UC-A7PG-01 19 34845710 34845710 C T KIAA0355 3'UTR 0.13 TCGA-UC-A7PG-01 19 36024382 36024382 C T GAPDHS 5'UTR 0.21 TCGA-UC-A7PG-01 19 38056436 38056436 C T ZNF571 Silent p.Q298Q 0.14 TCGA-UC-A7PG-01 19 38229829 38229829 G A ZNF573 Missense_Mutation p.T521I 0.12 deleterious(0.01) benign(0.106) TCGA-UC-A7PG-01 19 38573172 38573172 G A SIPA1L3 Missense_Mutation p.E323K 0.45 deleterious(0.01) benign(0.029) TCGA-UC-A7PG-01 19 39104708 39104708 G C MAP4K1 Missense_Mutation p.I145M 0.09 deleterious(0) probably_damaging(0.993) TCGA-UC-A7PG-01 19 39521855 39521855 G A FBXO27 Missense_Mutation p.S157L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-UC-A7PG-01 19 39964894 39964894 C T SUPT5H Missense_Mutation p.S891F 0.13 deleterious(0.02) benign(0.22) TCGA-UC-A7PG-01 19 41597660 41597660 G A CYP2A13 Silent p.V226V 0.13 TCGA-UC-A7PG-01 19 42866575 42866575 G A MEGF8 Missense_Mutation p.E1895K 0.18 tolerated(0.17) possibly_damaging(0.449) TCGA-UC-A7PG-01 19 43991227 43991227 C G PHLDB3 Missense_Mutation p.E400Q 0.11 tolerated(0.09) possibly_damaging(0.697) TCGA-UC-A7PG-01 19 45899687 45899687 C T PPP1R13L Silent p.L240L 0.09 TCGA-UC-A7PG-01 19 47575611 47575611 C G ZC3H4 Silent p.V600V 0.07 TCGA-UC-A7PG-01 19 48800291 48800291 G C CCDC114 Missense_Mutation p.T652S 0.09 tolerated(0.67) benign(0.024) TCGA-UC-A7PG-01 19 49793931 49793931 G C SLC6A16 Missense_Mutation p.I624M 0.20 deleterious(0.03) possibly_damaging(0.893) TCGA-UC-A7PG-01 19 49843736 49843736 C T CD37 3'UTR 0.25 TCGA-UC-A7PG-01 19 50302134 50302134 C G AP2A1 Missense_Mutation p.S297C 0.10 deleterious(0) probably_damaging(0.996) TCGA-UC-A7PG-01 19 50342030 50342030 G A MED25 3'Flank 0.13 TCGA-UC-A7PG-01 19 51919393 51919393 G C SIGLEC10 Silent p.V261V 0.09 TCGA-UC-A7PG-01 19 56466872 56466872 G C NLRP8 Missense_Mutation p.G483A 0.17 tolerated(1) benign(0.001) TCGA-UC-A7PG-01 19 57293447 57293447 C A ZIM2 Nonsense_Mutation p.E174* 0.20 TCGA-UC-A7PG-01 19 57326605 57326605 C T PEG3 Missense_Mutation p.D1069N 0.17 tolerated(0.54) benign(0) TCGA-UC-A7PG-01 19 58017952 58017952 C G ZNF773 Silent p.L163L 0.09 TCGA-UC-A7PG-01 19 58370396 58370396 C T ZNF587 Nonsense_Mutation p.Q206* 0.12 TCGA-UC-A7PG-01 19 58989546 58989546 C T ZNF446 Nonsense_Mutation p.Q209* 0.09 TCGA-UC-A7PG-01 19 6440386 6440386 C T SLC25A23 3'UTR 0.30 TCGA-UC-A7PG-01 19 7806040 7806040 G C CD209 3'UTR 0.19 TCGA-UC-A7PG-01 1 111216190 111216190 G A KCNA3 Silent p.S414S 0.21 TCGA-UC-A7PG-01 1 111828390 111828390 C G CHIAP2 RNA 0.33 TCGA-UC-A7PG-01 1 114184933 114184933 G C MAGI3 Silent p.G587G 0.23 TCGA-UC-A7PG-01 1 114499837 114499837 C G HIPK1 Missense_Mutation p.H562D 0.29 tolerated(0.11) benign(0.269) TCGA-UC-A7PG-01 1 116519282 116519282 G T SLC22A15 Nonsense_Mutation p.E12* 0.16 TCGA-UC-A7PG-01 1 117119905 117119905 T A IGSF3 3'UTR 0.22 TCGA-UC-A7PG-01 1 119575400 119575400 C G WARS2 3'UTR 0.15 TCGA-UC-A7PG-01 1 120056742 120056742 C G HSD3B1 Missense_Mutation p.S199C 0.15 tolerated(0.18) benign(0.033) TCGA-UC-A7PG-01 1 145295420 145295420 C T NBPF10 Intron 0.15 TCGA-UC-A7PG-01 1 145296382 145296382 C G NBPF10 Missense_Mutation p.Q102E 0.08 benign(0.405) TCGA-UC-A7PG-01 1 145522820 145522820 C T PEX11B Silent p.L227L 0.20 TCGA-UC-A7PG-01 1 150549785 150549785 C A MCL1 3'UTR 0.15 TCGA-UC-A7PG-01 1 152681887 152681887 C T LCE4A 3'UTR 0.12 TCGA-UC-A7PG-01 1 156096702 156096702 C G LMNA Intron 0.15 TCGA-UC-A7PG-01 1 158063138 158063138 C A KIRREL Missense_Mutation p.P494H 0.11 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PG-01 1 158912107 158912107 G C PYHIN1 Missense_Mutation p.R307T 0.20 deleterious(0.02) possibly_damaging(0.749) TCGA-UC-A7PG-01 1 15900092 15900092 C G AGMAT 3'UTR 0.11 TCGA-UC-A7PG-01 1 15900129 15900129 C G AGMAT 3'UTR 0.11 TCGA-UC-A7PG-01 1 159284418 159284418 T A OR10J3 Missense_Mutation p.E11V 0.10 deleterious(0.01) benign(0.062) TCGA-UC-A7PG-01 1 161989957 161989957 C A OLFML2B Missense_Mutation p.D64Y 0.19 deleterious(0) probably_damaging(0.986) TCGA-UC-A7PG-01 1 17405892 17405892 C T PADI2 Missense_Mutation p.V393M 0.22 tolerated(0.07) probably_damaging(0.998) TCGA-UC-A7PG-01 1 179991895 179991895 C G CEP350 Missense_Mutation p.P1100A 0.11 probably_damaging(0.999) TCGA-UC-A7PG-01 1 20005524 20005524 G A HTR6 Missense_Mutation p.R329Q 0.21 deleterious(0.04) possibly_damaging(0.532) TCGA-UC-A7PG-01 1 200817694 200817694 G C CAMSAP2 Missense_Mutation p.L599F 0.29 tolerated(0.05) probably_damaging(0.915) TCGA-UC-A7PG-01 1 206317588 206317588 C G CTSE Silent p.L4L 0.15 TCGA-UC-A7PG-01 1 212534948 212534948 G C PPP2R5A 3'UTR 0.08 TCGA-UC-A7PG-01 1 226595704 226595704 C G PARP1 5'UTR 0.15 TCGA-UC-A7PG-01 1 228505849 228505849 C A OBSCN Silent p.I5659I 0.07 TCGA-UC-A7PG-01 1 22924258 22924258 A T EPHA8 Missense_Mutation p.T674S 0.26 tolerated(0.38) benign(0.005) TCGA-UC-A7PG-01 1 231067569 231067569 G A TTC13 Silent p.L346L 0.12 TCGA-UC-A7PG-01 1 248367027 248367027 C G OR2M3 Missense_Mutation p.R220G 0.17 tolerated(0.32) benign(0.055) TCGA-UC-A7PG-01 1 27226689 27226689 G A GPATCH3 Missense_Mutation p.S82L 0.12 deleterious(0.01) benign(0.014) TCGA-UC-A7PG-01 1 29041253 29041253 C G GMEB1 Missense_Mutation p.H564D 0.22 tolerated_low_confidence(0.06) probably_damaging(0.977) TCGA-UC-A7PG-01 1 29641993 29641993 C T PTPRU Missense_Mutation p.R1123W 0.18 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 1 40209543 40209543 G C PPIE Missense_Mutation p.E111Q 0.14 tolerated(0.08) benign(0.057) TCGA-UC-A7PG-01 1 40980595 40980595 G C EXO5 Missense_Mutation p.E127Q 0.10 tolerated(0.06) probably_damaging(0.999) TCGA-UC-A7PG-01 1 43318000 43318000 G A ZNF691 3'Flank 0.17 TCGA-UC-A7PG-01 1 43916782 43916783 - A SZT2 3'UTR 0.42 TCGA-UC-A7PG-01 1 46874133 46874133 C G FAAH Silent p.V318V 0.46 TCGA-UC-A7PG-01 1 47142673 47142673 C T EFCAB14 3'UTR 0.11 TCGA-UC-A7PG-01 1 54605347 54605347 G C CDCP2 Missense_Mutation p.S399C 0.11 tolerated_low_confidence(0.19) unknown(0) TCGA-UC-A7PG-01 1 55139448 55139448 G C MROH7 Missense_Mutation p.L590F 0.27 deleterious(0) probably_damaging(0.984) TCGA-UC-A7PG-01 1 6533181 6533181 G A PLEKHG5 Silent p.F362F 0.17 TCGA-UC-A7PG-01 1 66833405 66833405 G T PDE4B Missense_Mutation p.D471Y 0.24 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 1 67787342 67787342 C T IL12RB2 Missense_Mutation p.S45F 0.19 deleterious(0) probably_damaging(0.997) TCGA-UC-A7PG-01 1 70541910 70541910 C T LRRC7 Missense_Mutation p.R1423W 0.19 deleterious(0.01) probably_damaging(0.92) TCGA-UC-A7PG-01 1 8421384 8421384 G A RERE Missense_Mutation p.S728L 0.22 possibly_damaging(0.637) TCGA-UC-A7PG-01 1 8555184 8555184 G A RERE Missense_Mutation p.S348F 0.09 probably_damaging(0.993) TCGA-UC-A7PG-01 20 20341048 20341048 C T C20orf26 Silent p.I1236I 0.42 TCGA-UC-A7PG-01 20 22381062 22381062 C G RP5-1004I9.1 RNA 0.10 TCGA-UC-A7PG-01 20 2635760 2635760 G C NOP56 Intron 0.13 TCGA-UC-A7PG-01 20 2776783 2776783 C T CPXM1 Missense_Mutation p.E423K 0.15 tolerated(0.14) benign(0.34) TCGA-UC-A7PG-01 20 30385216 30385216 G A TPX2 Missense_Mutation p.E615K 0.16 deleterious(0) possibly_damaging(0.713) TCGA-UC-A7PG-01 20 30513719 30513719 G A TTLL9 Intron 0.20 TCGA-UC-A7PG-01 20 417265 417265 G A TBC1D20 3'UTR 0.26 TCGA-UC-A7PG-01 20 44441874 44441874 G C UBE2C Intron 0.27 TCGA-UC-A7PG-01 20 57484251 57484251 G A GNAS Missense_Mutation p.D832N 0.11 tolerated(0.07) probably_damaging(0.99) TCGA-UC-A7PG-01 20 57766435 57766435 C A ZNF831 Missense_Mutation p.L121M 0.15 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PG-01 20 5931075 5931075 C T TRMT6 5'UTR 0.24 TCGA-UC-A7PG-01 20 60885756 60885756 C T LAMA5 Missense_Mutation p.G3471S 0.29 benign(0.043) TCGA-UC-A7PG-01 20 62187953 62187953 G A C20orf195 Missense_Mutation p.A313T 0.24 tolerated_low_confidence(0.32) benign(0.001) TCGA-UC-A7PG-01 20 62324608 62324608 G A RTEL1 Silent p.Q1012Q 0.09 TCGA-UC-A7PG-01 20 62324609 62324609 C A RTEL1 Silent p.R1013R 0.09 TCGA-UC-A7PG-01 20 62838993 62838993 C T MYT1 Silent p.S148S 0.12 TCGA-UC-A7PG-01 21 32513759 32513759 G A TIAM1 Missense_Mutation p.S1180F 0.24 deleterious(0.01) possibly_damaging(0.514) TCGA-UC-A7PG-01 21 35742950 35742950 G C KCNE2 Missense_Mutation p.G58A 0.26 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 21 40649194 40649194 C T BRWD1 Missense_Mutation p.E363K 0.31 deleterious(0) probably_damaging(0.987) TCGA-UC-A7PG-01 22 19028606 19028606 G A DGCR2 Missense_Mutation p.S454F 0.18 deleterious(0) possibly_damaging(0.812) TCGA-UC-A7PG-01 22 20759866 20759866 C G ZNF74 Silent p.L181L 0.08 TCGA-UC-A7PG-01 22 22843450 22843450 C G ZNF280B Missense_Mutation p.E92Q 0.14 tolerated(0.66) benign(0.266) TCGA-UC-A7PG-01 22 30863035 30863035 C A SEC14L3 Missense_Mutation p.M151I 0.21 tolerated(0.16) possibly_damaging(0.841) TCGA-UC-A7PG-01 22 30863049 30863049 C T SEC14L3 Missense_Mutation p.E147K 0.13 deleterious(0) possibly_damaging(0.535) TCGA-UC-A7PG-01 22 32487635 32487635 C G SLC5A1 Missense_Mutation p.S389C 0.33 deleterious(0) probably_damaging(0.928) TCGA-UC-A7PG-01 22 38273794 38273794 G C EIF3L Missense_Mutation p.K397N 0.07 tolerated(0.1) benign(0.329) TCGA-UC-A7PG-01 22 39137022 39137022 C G SUN2 Missense_Mutation p.E415Q 0.12 tolerated(0.12) benign(0.186) TCGA-UC-A7PG-01 2 103380843 103380843 C T TMEM182 Silent p.F96F 0.17 TCGA-UC-A7PG-01 2 141473576 141473576 G A LRP1B Nonsense_Mutation p.Q1997* 0.17 TCGA-UC-A7PG-01 2 151331465 151331465 G C RND3 Missense_Mutation p.S91C 0.14 tolerated(0.47) probably_damaging(0.997) TCGA-UC-A7PG-01 2 167056047 167056047 T G SCN9A Missense_Mutation p.D1690A 0.21 deleterious(0.03) possibly_damaging(0.613) TCGA-UC-A7PG-01 2 167760343 167760343 G C XIRP2 Silent p.L117L 0.19 TCGA-UC-A7PG-01 2 179736995 179736995 G A CCDC141 Silent p.L648L 0.17 TCGA-UC-A7PG-01 2 18736893 18736893 G C RDH14 Missense_Mutation p.S192C 0.12 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 2 20824561 20824561 C T HS1BP3 Missense_Mutation p.E239K 0.19 tolerated(0.16) benign(0.118) TCGA-UC-A7PG-01 2 236877170 236877170 C T AGAP1 Silent p.L516L 0.16 TCGA-UC-A7PG-01 2 238289862 238289863 AA - COL6A3 Frame_Shift_Del p.F531Cfs*3 0.43 TCGA-UC-A7PG-01 2 241570548 241570548 C G GPR35 3'UTR 0.17 TCGA-UC-A7PG-01 2 65540776 65540776 C G SPRED2 Missense_Mutation p.E372D 0.23 tolerated(0.4) benign(0.359) TCGA-UC-A7PG-01 3 107765129 107765129 C T CD47 3'Flank 0.50 TCGA-UC-A7PG-01 3 111981896 111981896 C G SLC9C1 Missense_Mutation p.E358Q 0.35 deleterious(0.01) possibly_damaging(0.671) TCGA-UC-A7PG-01 3 113524319 113524319 A G ATP6V1A Missense_Mutation p.I570V 0.40 tolerated(0.43) benign(0.26) TCGA-UC-A7PG-01 3 122269556 122269556 C G PARP9 Missense_Mutation p.E436Q 0.12 tolerated(0.55) benign(0.006) TCGA-UC-A7PG-01 3 123332900 123332900 G C MYLK 3'UTR 0.11 TCGA-UC-A7PG-01 3 124738356 124738356 G A HEG1 Silent p.V446V 0.23 TCGA-UC-A7PG-01 3 132036383 132036383 G T ACPP Missense_Mutation p.R28L 0.53 tolerated(0.13) benign(0.13) TCGA-UC-A7PG-01 3 132186017 132186017 C T DNAJC13 Nonsense_Mutation p.Q690* 0.15 TCGA-UC-A7PG-01 3 136016889 136016889 C G PCCB Missense_Mutation p.P307A 0.16 deleterious_low_confidence(0.02) benign(0.177) TCGA-UC-A7PG-01 3 13668014 13668014 C G FBLN2 Missense_Mutation p.S789C 0.23 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 3 139173610 139173610 G A RBP2 Silent p.R105R 0.11 TCGA-UC-A7PG-01 3 148750028 148750028 G C HLTF Missense_Mutation p.I1003M 0.11 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PG-01 3 151535252 151535252 C T AADAC Silent p.V79V 0.55 TCGA-UC-A7PG-01 3 156763168 156763168 G A LEKR1 Missense_Mutation p.E570K 0.10 deleterious(0) possibly_damaging(0.486) TCGA-UC-A7PG-01 3 195974269 195974269 G A PCYT1A Missense_Mutation p.T152M 0.25 deleterious(0.04) probably_damaging(0.988) TCGA-UC-A7PG-01 3 197619574 197619574 C T IQCG Missense_Mutation p.M340I 0.15 deleterious(0.05) benign(0.265) TCGA-UC-A7PG-01 3 20215960 20215960 C T SGOL1 Missense_Mutation p.D355N 0.20 deleterious(0.05) possibly_damaging(0.776) TCGA-UC-A7PG-01 3 25636025 25636025 G A RARB Missense_Mutation p.E336K 0.28 tolerated(0.12) benign(0.015) TCGA-UC-A7PG-01 3 42845799 42845799 C T HIGD1A 5'UTR 0.18 TCGA-UC-A7PG-01 3 52521931 52521931 G A NISCH Missense_Mutation p.R808H 0.23 tolerated(0.27) benign(0.019) TCGA-UC-A7PG-01 3 54952459 54952459 G T LRTM1 3'UTR 0.12 TCGA-UC-A7PG-01 3 58270824 58270824 C G ABHD6 Missense_Mutation p.L232V 0.17 deleterious(0.02) possibly_damaging(0.591) TCGA-UC-A7PG-01 3 69097292 69097292 C T TMF1 Silent p.K188K 0.30 TCGA-UC-A7PG-01 3 97806749 97806749 G A OR5AC2 Missense_Mutation p.A245T 0.12 deleterious(0.01) probably_damaging(0.957) TCGA-UC-A7PG-01 4 106158876 106158877 - A TET2 Intron 0.23 TCGA-UC-A7PG-01 4 106816743 106816743 C T NPNT 5'UTR 0.21 TCGA-UC-A7PG-01 4 107181613 107181613 C T TBCK Missense_Mutation p.D146N 0.17 tolerated(0.77) benign(0.102) TCGA-UC-A7PG-01 4 111542161 111542161 C G PITX2 Intron 0.16 TCGA-UC-A7PG-01 4 114288883 114288883 G C ANK2 Missense_Mutation p.E3732Q 0.20 possibly_damaging(0.812) TCGA-UC-A7PG-01 4 146056332 146056332 A G OTUD4 3'UTR 0.19 TCGA-UC-A7PG-01 4 151124960 151124960 C A DCLK2 Silent p.P342P 0.22 TCGA-UC-A7PG-01 4 155219313 155219313 C T DCHS2 Silent p.S1596S 0.28 TCGA-UC-A7PG-01 4 170190459 170190459 C T SH3RF1 Splice_Site 0.35 TCGA-UC-A7PG-01 4 40825739 40825739 C T APBB2 Missense_Mutation p.M618I 0.18 tolerated(0.42) benign(0.001) TCGA-UC-A7PG-01 4 42658891 42658891 C T ATP8A1 5'UTR 0.16 TCGA-UC-A7PG-01 4 62937628 62937628 C A LPHN3 3'UTR 0.26 TCGA-UC-A7PG-01 4 75719615 75719615 G C BTC 5'UTR 0.27 TCGA-UC-A7PG-01 5 109026172 109026172 G C MAN2A1 Silent p.V18V 0.14 TCGA-UC-A7PG-01 5 118482555 118482555 G C DMXL1 Missense_Mutation p.E865Q 0.18 deleterious(0.01) possibly_damaging(0.638) TCGA-UC-A7PG-01 5 121356455 121356455 C G SRFBP1 Nonsense_Mutation p.S342* 0.26 TCGA-UC-A7PG-01 5 131823632 131823632 C A IRF1 Missense_Mutation p.W58L 0.52 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 5 137621218 137621218 G A CDC25C 3'UTR 0.24 TCGA-UC-A7PG-01 5 139062611 139062611 C T CXXC5 3'UTR 0.15 TCGA-UC-A7PG-01 5 140216085 140216085 C T PCDHA7 Missense_Mutation p.A706V 0.30 deleterious_low_confidence(0.02) benign(0.038) TCGA-UC-A7PG-01 5 140250875 140250875 C T PCDHA11 Silent p.G729G 0.54 TCGA-UC-A7PG-01 5 169116272 169116272 C T DOCK2 Nonsense_Mutation p.R260* 0.15 TCGA-UC-A7PG-01 5 176721900 176721900 G T NSD1 Missense_Mutation p.D2511Y 0.14 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-UC-A7PG-01 5 178413884 178413884 G A GRM6 Silent p.G485G 0.09 TCGA-UC-A7PG-01 5 179016551 179016551 C T RUFY1 Missense_Mutation p.S344L 0.07 deleterious(0.02) benign(0.084) TCGA-UC-A7PG-01 5 179016583 179016583 G C RUFY1 Missense_Mutation p.E355Q 0.09 deleterious(0) benign(0.24) TCGA-UC-A7PG-01 5 180582776 180582776 C G OR2V2 Missense_Mutation p.F278L 0.16 deleterious(0.01) possibly_damaging(0.457) TCGA-UC-A7PG-01 5 26881262 26881262 C T CDH9 Missense_Mutation p.D785N 0.26 deleterious(0.04) benign(0.149) TCGA-UC-A7PG-01 5 40853083 40853083 C A CARD6 Missense_Mutation p.S550Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PG-01 5 41176706 41176706 G C C6 Missense_Mutation p.L347V 0.07 deleterious(0) probably_damaging(0.982) TCGA-UC-A7PG-01 5 52780941 52780941 C T FST Missense_Mutation p.S279L 0.22 deleterious(0.05) benign(0.171) TCGA-UC-A7PG-01 5 64931800 64931800 G A TRAPPC13 Missense_Mutation p.D49N 0.13 tolerated(0.09) benign(0.093) TCGA-UC-A7PG-01 5 65105975 65105975 G A NLN Missense_Mutation p.G609E 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-UC-A7PG-01 5 66459300 66459300 G C MAST4 Missense_Mutation p.K1431N 0.12 probably_damaging(0.998) TCGA-UC-A7PG-01 5 66478703 66478703 C G CD180 Missense_Mutation p.W656C 0.17 deleterious(0.01) possibly_damaging(0.838) TCGA-UC-A7PG-01 5 68606953 68606953 G C CCDC125 Missense_Mutation p.Q149E 0.09 deleterious(0) benign(0.001) TCGA-UC-A7PG-01 5 71756661 71756661 C G ZNF366 Missense_Mutation p.E221D 0.22 tolerated(0.19) benign(0.004) TCGA-UC-A7PG-01 5 825363 825363 G C ZDHHC11 Silent p.V313V 0.06 TCGA-UC-A7PG-01 5 85582741 85582741 G A NBPF22P RNA 0.44 TCGA-UC-A7PG-01 5 89914988 89914988 C T GPR98 Missense_Mutation p.S148L 0.07 possibly_damaging(0.849) TCGA-UC-A7PG-01 5 93775689 93775689 G C KIAA0825 Nonsense_Mutation p.S832* 0.09 TCGA-UC-A7PG-01 6 107388086 107388086 G C BEND3 3'UTR 0.17 TCGA-UC-A7PG-01 6 12294291 12294291 G C EDN1 Missense_Mutation p.K117N 0.18 tolerated(0.06) benign(0.132) TCGA-UC-A7PG-01 6 41254391 41254391 C T TREM1 Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.994) TCGA-UC-A7PG-01 6 46657421 46657421 G A TDRD6 Missense_Mutation p.R519K 0.22 tolerated(0.89) benign(0.02) TCGA-UC-A7PG-01 6 46658275 46658275 G A TDRD6 Missense_Mutation p.D804N 0.14 tolerated(0.46) benign(0.031) TCGA-UC-A7PG-01 6 47976560 47976560 C T PTCHD4 Silent p.V239V 0.14 TCGA-UC-A7PG-01 6 57512599 57512599 G T PRIM2 3'UTR 0.13 TCGA-UC-A7PG-01 6 72892043 72892043 G A RIMS1 Missense_Mutation p.R290Q 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-UC-A7PG-01 6 80744798 80744798 G A TTK Missense_Mutation p.E571K 0.26 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 6 86284075 86284075 G T SNX14 Silent p.I54I 0.31 TCGA-UC-A7PG-01 6 89907918 89907918 C G GABRR1 Missense_Mutation p.E131D 0.07 tolerated(0.08) benign(0.019) TCGA-UC-A7PG-01 6 90380696 90380696 C T MDN1 Missense_Mutation p.R4633H 0.17 probably_damaging(0.997) TCGA-UC-A7PG-01 6 94120556 94120556 C T EPHA7 Missense_Mutation p.M165I 0.12 deleterious(0) probably_damaging(0.995) TCGA-UC-A7PG-01 7 100028737 100028737 C T MEPCE Missense_Mutation p.R366C 0.22 deleterious(0) possibly_damaging(0.898) TCGA-UC-A7PG-01 7 105673107 105673107 G A CDHR3 Missense_Mutation p.M874I 0.12 tolerated_low_confidence(0.6) benign(0) TCGA-UC-A7PG-01 7 123599693 123599693 C T SPAM1 Silent p.L400L 0.41 TCGA-UC-A7PG-01 7 131188076 131188076 G A PODXL 3'Flank 0.12 TCGA-UC-A7PG-01 7 13946170 13946170 C T ETV1 Missense_Mutation p.R332Q 0.13 deleterious(0) probably_damaging(0.975) TCGA-UC-A7PG-01 7 141722119 141722119 C G MGAM Silent p.L254L 0.12 TCGA-UC-A7PG-01 7 148484186 148484186 G A CUL1 Missense_Mutation p.E485K 0.26 deleterious(0) probably_damaging(0.991) TCGA-UC-A7PG-01 7 149529936 149529936 G A SSPO RNA 0.12 TCGA-UC-A7PG-01 7 150171337 150171337 C G GIMAP8 Nonsense_Mutation p.S307* 0.14 TCGA-UC-A7PG-01 7 151818021 151818021 G A GALNT11 Missense_Mutation p.G555R 0.20 tolerated(0.17) possibly_damaging(0.573) TCGA-UC-A7PG-01 7 38765855 38765855 C T VPS41 Missense_Mutation p.M852I 0.16 deleterious_low_confidence(0.04) benign(0.022) TCGA-UC-A7PG-01 7 47969109 47969109 G A PKD1L1 Missense_Mutation p.P251L 0.41 tolerated(1) benign(0) TCGA-UC-A7PG-01 7 48068439 48068439 C T SUN3 Missense_Mutation p.E33K 0.19 deleterious_low_confidence(0.03) benign(0.194) TCGA-UC-A7PG-01 7 4959804 4959804 G C MMD2 Silent p.L96L 0.12 TCGA-UC-A7PG-01 7 6388302 6388302 G A FAM220A 5'UTR 0.20 TCGA-UC-A7PG-01 7 72081672 72081672 C T TYW1B Silent p.L216L 0.15 TCGA-UC-A7PG-01 7 73535551 73535551 G C LIMK1 Missense_Mutation p.E622Q 0.11 deleterious(0.04) possibly_damaging(0.665) TCGA-UC-A7PG-01 7 75689763 75689763 G A MDH2 Missense_Mutation p.G168S 0.32 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 7 90896138 90896138 G A FZD1 Silent p.%3D 0.15 TCGA-UC-A7PG-01 7 98574353 98574353 C T TRRAP Missense_Mutation p.T2729M 0.18 benign(0.075) TCGA-UC-A7PG-01 8 141742693 141742693 G C PTK2 Intron 0.14 TCGA-UC-A7PG-01 8 146157779 146157779 G A ZNF16 Nonsense_Mutation p.Q132* 0.16 TCGA-UC-A7PG-01 8 15519711 15519711 C T TUSC3 Missense_Mutation p.A205V 0.19 tolerated(0.72) benign(0.029) TCGA-UC-A7PG-01 8 169279 169317 TTTTTCCTCACCTTCCTCAATGGCCTGCAGCCACGTCTC CTTTTGCCTCACCTTCCTCAATGGCCTCCAGCCACGTCT RPL23AP53 Splice_Site 0.18 TCGA-UC-A7PG-01 8 26227730 26227730 C T PPP2R2A Missense_Mutation p.S392L 0.19 deleterious(0.01) probably_damaging(0.952) TCGA-UC-A7PG-01 8 6616350 6616350 G C AGPAT5 3'UTR 0.08 TCGA-UC-A7PG-01 8 77620097 77620097 G T ZFHX4 Missense_Mutation p.Q969H 0.15 benign(0.387) TCGA-UC-A7PG-01 8 81432433 81432433 C G ZBTB10 3'UTR 0.28 TCGA-UC-A7PG-01 8 95518781 95518781 G A KIAA1429 Silent p.V1348V 0.31 TCGA-UC-A7PG-01 9 100190947 100190947 C T TDRD7 Missense_Mutation p.S67F 0.22 deleterious(0.03) possibly_damaging(0.663) TCGA-UC-A7PG-01 9 101597633 101597633 C G GALNT12 Silent p.L340L 0.10 TCGA-UC-A7PG-01 9 103340448 103340448 C G MURC Nonsense_Mutation p.S8* 0.16 TCGA-UC-A7PG-01 9 112899496 112899496 C T PALM2-AKAP2 Missense_Mutation p.R558C 0.31 deleterious(0) probably_damaging(0.998) TCGA-UC-A7PG-01 9 123937465 123937465 C G CNTRL Missense_Mutation p.S2306C 0.13 possibly_damaging(0.869) TCGA-UC-A7PG-01 9 123941872 123941872 G C RAB14 3'UTR 0.15 TCGA-UC-A7PG-01 9 123942062 123942062 G A RAB14 3'UTR 0.18 TCGA-UC-A7PG-01 9 123942629 123942629 G C RAB14 3'UTR 0.21 TCGA-UC-A7PG-01 9 123942720 123942720 G A RAB14 3'UTR 0.16 TCGA-UC-A7PG-01 9 123942844 123942844 G A RAB14 3'UTR 0.26 TCGA-UC-A7PG-01 9 123943041 123943041 G A RAB14 3'UTR 0.21 TCGA-UC-A7PG-01 9 123943049 123943049 G A RAB14 3'UTR 0.21 TCGA-UC-A7PG-01 9 123943307 123943307 G T RAB14 3'UTR 0.23 TCGA-UC-A7PG-01 9 123943333 123943333 G C RAB14 3'UTR 0.24 TCGA-UC-A7PG-01 9 131750413 131750413 G A NUP188 Silent p.L827L 0.18 TCGA-UC-A7PG-01 9 132591771 132591771 G A C9orf78 Silent p.L198L 0.28 TCGA-UC-A7PG-01 9 132854651 132854651 G A GPR107 Missense_Mutation p.R285Q 0.21 tolerated(0.34) possibly_damaging(0.72) TCGA-UC-A7PG-01 9 134455685 134455685 G A RAPGEF1 Silent p.F1034F 0.16 TCGA-UC-A7PG-01 9 136230534 136230534 G A SURF4 Silent p.I215I 0.17 TCGA-UC-A7PG-01 9 136405775 136405775 C T ADAMTSL2 Silent p.D156D 0.11 TCGA-UC-A7PG-01 9 14868942 14868942 C T FREM1 Missense_Mutation p.V12M 0.26 tolerated(0.07) benign(0.01) TCGA-UC-A7PG-01 9 14868950 14868950 G A FREM1 Missense_Mutation p.A9V 0.25 tolerated(0.58) benign(0.003) TCGA-UC-A7PG-01 9 21206411 21206411 A - IFNA10 3'UTR 0.26 TCGA-UC-A7PG-01 9 35681007 35681007 C T CA9 Silent p.A455A 0.23 TCGA-UC-A7PG-01 9 75773670 75773670 C T ANXA1 Silent p.F42F 0.21 TCGA-UC-A7PG-01 9 84609298 84609298 G A SPATA31D1 Missense_Mutation p.D1305N 0.30 tolerated(0.1) benign(0.048) TCGA-UC-A7PG-01 9 86584721 86584721 C T HNRNPK Intron 0.13 TCGA-UC-A7PG-01 9 90535186 90535186 G C SPATA31C1 RNA 0.18 TCGA-UC-A7PG-01 9 97365629 97365629 G C FBP1 3'UTR 0.14 TCGA-UC-A7PG-01 9 97844919 97844919 C G C9orf3 Silent p.L794L 0.23 TCGA-UC-A7PG-01 X 10202131 10202131 G C CLCN4 3'UTR 0.23 TCGA-UC-A7PG-01 X 10202136 10202136 T G CLCN4 3'UTR 0.22 TCGA-UC-A7PG-01 X 105199584 105199584 G C NRK Missense_Mutation p.D1582H 0.12 deleterious_low_confidence(0.03) benign(0.303) TCGA-UC-A7PG-01 X 107418371 107418371 C G COL4A6 Missense_Mutation p.D970H 0.14 probably_damaging(0.999) TCGA-UC-A7PG-01 X 110494943 110494943 C G CAPN6 Missense_Mutation p.E243Q 0.17 tolerated(0.35) probably_damaging(0.913) TCGA-UC-A7PG-01 X 118586052 118586052 G A SLC25A43 Silent p.V257V 0.07 TCGA-UC-A7PG-01 X 128873145 128873145 C T XPNPEP2 5'UTR 0.24 TCGA-UC-A7PG-01 X 129191320 129191320 G A BCORL1 3'UTR 0.20 TCGA-UC-A7PG-01 X 129272645 129272645 G A AIFM1 Missense_Mutation p.S297L 0.16 tolerated(0.3) benign(0.206) TCGA-UC-A7PG-01 X 130409523 130409523 C A IGSF1 Missense_Mutation p.C1043F 0.44 deleterious(0) probably_damaging(0.999) TCGA-UC-A7PG-01 X 135292062 135292062 G A FHL1 Missense_Mutation p.M307I 0.15 deleterious_low_confidence(0) benign(0.019) TCGA-UC-A7PG-01 X 138701826 138701826 C T MCF2 Missense_Mutation p.E303K 0.15 tolerated(0.18) benign(0.41) TCGA-UC-A7PG-01 X 1404670 1404670 G C CSF2RA Splice_Site p.X26_splice 0.11 TCGA-UC-A7PG-01 X 146993659 146993659 C T FMR1 5'UTR 0.13 TCGA-UC-A7PG-01 X 153152433 153152433 G C LCA10 Missense_Mutation p.E274Q 0.19 tolerated_low_confidence(0.06) benign(0.005) TCGA-UC-A7PG-01 X 153697045 153697045 C T PLXNA3 Silent p.F1420F 0.19 TCGA-UC-A7PG-01 X 15872969 15872969 C G AP1S2 5'UTR 0.30 TCGA-UC-A7PG-01 X 17772680 17772680 G C SCML1 3'Flank 0.12 TCGA-UC-A7PG-01 X 19984205 19984205 G A CXorf23 Nonsense_Mutation p.Q202* 0.28 TCGA-UC-A7PG-01 X 37553705 37553705 C T XK Missense_Mutation p.R138W 0.19 deleterious(0) probably_damaging(1) TCGA-UC-A7PG-01 X 48206445 48206445 C G SSX3 3'UTR 0.15 TCGA-UC-A7PG-01 X 53449597 53449597 G A SMC1A 5'UTR 0.38 TCGA-UC-A7PG-01 X 55785123 55785123 G A RRAGB 3'Flank 0.10 TCGA-UC-A7PG-01 X 64953101 64953101 G C MSN Missense_Mutation p.D252H 0.13 deleterious(0) probably_damaging(0.993) TCGA-UC-A7PG-01 X 69719792 69719792 G T DLG3 Nonsense_Mutation p.E680* 0.29 TCGA-UC-A7PG-01 X 91874196 91874196 G A PCDH11X 3'UTR 0.12 TCGA-UC-A7PI-01 10 17865149 17865149 C T MRC1L1 Silent p.T46T 0.86 TCGA-UC-A7PI-01 10 89624284 89624284 G - PTEN Frame_Shift_Del p.G20Dfs*4 0.41 TCGA-UC-A7PI-01 10 97515501 97515501 C T ENTPD1 Silent p.F10F 0.81 TCGA-UC-A7PI-01 11 107975809 107975809 A T CUL5 3'UTR 0.11 TCGA-UC-A7PI-01 11 74688757 74688757 T C SPCS2 3'UTR 0.45 TCGA-UC-A7PI-01 11 76372503 76372503 G A LRRC32 Missense_Mutation p.S45L 0.64 tolerated(0.38) benign(0.002) TCGA-UC-A7PI-01 11 89447493 89447493 G A TRIM77 Missense_Mutation p.R214K 0.41 tolerated(0.63) benign(0.001) TCGA-UC-A7PI-01 12 106460675 106460675 G A NUAK1 Missense_Mutation p.R631W 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-UC-A7PI-01 12 123475131 123475131 C T PITPNM2 Missense_Mutation p.G844S 0.42 deleterious(0.04) probably_damaging(1) TCGA-UC-A7PI-01 12 25378562 25378562 C T KRAS Missense_Mutation p.A146T 0.90 deleterious(0.03) possibly_damaging(0.876) TCGA-UC-A7PI-01 12 69053700 69053700 A C RAP1B 3'UTR 0.25 TCGA-UC-A7PI-01 12 72080276 72080276 A C TMEM19 5'UTR 0.40 TCGA-UC-A7PI-01 13 111371981 111371981 C T ING1 Missense_Mutation p.A324V 0.53 tolerated(0.12) benign(0.109) TCGA-UC-A7PI-01 13 36871944 36871944 G A CCDC169 5'Flank 0.55 TCGA-UC-A7PI-01 13 47127578 47127578 C T LRCH1 Missense_Mutation p.S16L 0.48 deleterious_low_confidence(0.01) benign(0.294) TCGA-UC-A7PI-01 13 50589882 50589882 G A KCNRG Missense_Mutation p.E85K 0.30 deleterious(0) probably_damaging(0.986) TCGA-UC-A7PI-01 13 67800964 67800964 G A PCDH9 Nonsense_Mutation p.R537* 0.32 TCGA-UC-A7PI-01 13 78474790 78474790 C T EDNRB Splice_Site p.X408_splice 0.42 TCGA-UC-A7PI-01 14 102698927 102698927 C T MOK Missense_Mutation p.D271N 0.40 tolerated(0.11) probably_damaging(0.991) TCGA-UC-A7PI-01 14 105962319 105962319 C G C14orf80 Intron 0.48 TCGA-UC-A7PI-01 14 106237014 106237014 C T IGHG3 Missense_Mutation p.R113Q 0.52 tolerated(0.59) benign(0) TCGA-UC-A7PI-01 14 107131213 107131213 G A IGHV3-66 Silent p.V56V 0.42 TCGA-UC-A7PI-01 14 32295907 32295907 G C NUBPL Missense_Mutation p.R227T 0.47 deleterious(0) benign(0.004) TCGA-UC-A7PI-01 14 56106693 56106693 G A KTN1 Missense_Mutation p.R629H 0.04 tolerated(1) benign(0) TCGA-UC-A7PI-01 16 53338519 53338519 G A CHD9 Missense_Mutation p.E2201K 0.53 unknown(0) TCGA-UC-A7PI-01 17 29325917 29325917 G A RNF135 Missense_Mutation p.R336H 0.23 deleterious(0) probably_damaging(1) TCGA-UC-A7PI-01 17 44249272 44249272 C T KANSL1 Missense_Mutation p.A80T 0.26 tolerated(0.11) possibly_damaging(0.801) TCGA-UC-A7PI-01 17 58026867 58026867 T C RPS6KB1 3'UTR 0.31 TCGA-UC-A7PI-01 17 74057242 74057242 G C SRP68 Missense_Mutation p.Q235E 0.20 deleterious(0.04) probably_damaging(0.985) TCGA-UC-A7PI-01 19 16847526 16847526 C T NWD1 Missense_Mutation p.R55W 0.16 tolerated(0.24) benign(0.119) TCGA-UC-A7PI-01 19 44065064 44065064 C T XRCC1 Missense_Mutation p.E85K 0.43 tolerated(0.12) benign(0.035) TCGA-UC-A7PI-01 19 4700283 4700283 T C DPP9 Missense_Mutation p.K340R 0.40 tolerated(0.35) probably_damaging(0.947) TCGA-UC-A7PI-01 19 50310008 50310008 A G AP2A1 Missense_Mutation p.Q976R 0.51 tolerated(0.28) possibly_damaging(0.679) TCGA-UC-A7PI-01 19 50813131 50813131 C T MYH14 3'UTR 0.47 TCGA-UC-A7PI-01 19 53344974 53344974 C A ZNF468 Missense_Mutation p.K191N 0.44 tolerated(0.58) benign(0) TCGA-UC-A7PI-01 1 153994773 153994773 T C NUP210L Missense_Mutation p.M1449V 0.43 tolerated(1) benign(0.001) TCGA-UC-A7PI-01 1 159170878 159170878 C T CADM3 3'UTR 0.36 TCGA-UC-A7PI-01 1 161192228 161192228 G A AL590714.1 Missense_Mutation p.E55K 0.42 possibly_damaging(0.497) TCGA-UC-A7PI-01 1 181452907 181452907 C A CACNA1E Silent p.V9V 0.20 TCGA-UC-A7PI-01 1 22902746 22902746 C T EPHA8 Missense_Mutation p.P66S 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-UC-A7PI-01 1 248113064 248113064 G A OR2L8 Missense_Mutation p.R302Q 0.42 deleterious(0.02) benign(0.091) TCGA-UC-A7PI-01 1 36359307 36359307 C T AGO1 Missense_Mutation p.P182L 0.26 deleterious(0.01) probably_damaging(1) TCGA-UC-A7PI-01 1 98165062 98165062 C A DPYD Silent p.S175S 0.50 TCGA-UC-A7PI-01 20 3652332 3652332 C T ADAM33 Missense_Mutation p.G601S 0.69 tolerated(0.14) benign(0.173) TCGA-UC-A7PI-01 21 45811422 45811422 G T TRPM2 Missense_Mutation p.G570W 0.35 deleterious(0) probably_damaging(0.994) TCGA-UC-A7PI-01 22 31600594 31600594 C T RNF185 3'UTR 0.48 TCGA-UC-A7PI-01 22 50683785 50683785 G T HDAC10 3'UTR 0.36 TCGA-UC-A7PI-01 2 130951688 130951688 G A TUBA3E Nonsense_Mutation p.R243* 0.07 TCGA-UC-A7PI-01 2 161349964 161349964 G A RBMS1 5'UTR 0.56 TCGA-UC-A7PI-01 2 172641606 172641607 - T SLC25A12 3'UTR 0.41 TCGA-UC-A7PI-01 2 227892703 227892703 C T COL4A4 Silent p.P1332P 0.38 TCGA-UC-A7PI-01 2 242072344 242072344 C G PASK Missense_Mutation p.E470Q 0.50 tolerated(1) benign(0.004) TCGA-UC-A7PI-01 3 129368266 129368266 T - TMCC1 3'UTR 0.25 TCGA-UC-A7PI-01 3 180694861 180694861 T C FXR1 3'UTR 0.05 TCGA-UC-A7PI-01 3 40286003 40286003 C T MYRIP Missense_Mutation p.R723C 0.24 deleterious(0.03) benign(0.284) TCGA-UC-A7PI-01 3 48677329 48677329 G A CELSR3 Missense_Mutation p.S3230L 0.54 tolerated_low_confidence(0.17) benign(0) TCGA-UC-A7PI-01 3 48677463 48677463 G C CELSR3 Silent p.L3185L 0.46 TCGA-UC-A7PI-01 3 55504208 55504208 G A WNT5A Missense_Mutation p.T352M 0.45 tolerated(0.09) possibly_damaging(0.667) TCGA-UC-A7PI-01 4 108615064 108615064 G A PAPSS1 Missense_Mutation p.R92C 0.44 deleterious(0) probably_damaging(0.997) TCGA-UC-A7PI-01 4 114286192 114286192 C T ANK2 Intron 0.49 TCGA-UC-A7PI-01 4 183267851 183267851 C A TENM3 Silent p.R94R 0.50 TCGA-UC-A7PI-01 4 71859433 71859433 C G DCK 5'UTR 0.43 TCGA-UC-A7PI-01 5 140595219 140595219 G A PCDHB13 Silent p.A508A 0.30 TCGA-UC-A7PI-01 5 141041627 141041627 C T ARAP3 Missense_Mutation p.R999H 0.46 tolerated(0.5) probably_damaging(0.97) TCGA-UC-A7PI-01 5 171488268 171488268 C T STK10 Missense_Mutation p.R696Q 0.33 tolerated(1) benign(0.017) TCGA-UC-A7PI-01 5 483393 483393 G A SLC9A3 Silent p.S379S 0.10 TCGA-UC-A7PI-01 5 71016611 71016611 C A CARTPT 3'UTR 0.46 TCGA-UC-A7PI-01 6 65531553 65531553 A T EYS Nonsense_Mutation p.C1076* 0.26 TCGA-UC-A7PI-01 6 70897869 70897869 G T COL19A1 Missense_Mutation p.G983C 0.52 deleterious(0) probably_damaging(1) TCGA-UC-A7PI-01 7 148080842 148080842 G A CNTNAP2 Missense_Mutation p.A1193T 0.37 deleterious(0.01) probably_damaging(0.987) TCGA-UC-A7PI-01 7 149171612 149171612 G A ZNF746 Missense_Mutation p.P601S 0.13 tolerated_low_confidence(0.09) probably_damaging(0.986) TCGA-UC-A7PI-01 7 2740160 2740160 C T AMZ1 Silent p.D25D 0.18 TCGA-UC-A7PI-01 7 29963305 29963306 - A SCRN1 3'Flank 0.69 TCGA-UC-A7PI-01 7 76828793 76828793 G T FGL2 Missense_Mutation p.N106K 0.39 tolerated(0.18) benign(0.006) TCGA-UC-A7PI-01 7 77885555 77885555 C T MAGI2 Silent p.P584P 0.47 TCGA-UC-A7PI-01 8 11400734 11400734 A T BLK Translation_Start_Site p.M1? 0.45 tolerated(0.1) benign(0.267) TCGA-UC-A7PI-01 9 104390636 104390636 G A GRIN3A Silent p.S800S 0.39 TCGA-UC-A7PI-01 9 33281039 33281039 G A CHMP5 3'UTR 0.58 TCGA-UC-A7PI-01 X 100492628 100492628 C G DRP2 Nonsense_Mutation p.S101* 0.48 TCGA-UC-A7PI-01 X 135426677 135426677 C G GPR112 Missense_Mutation p.S271C 0.26 deleterious(0.01) possibly_damaging(0.862) TCGA-UC-A7PI-01 X 13801640 13801640 C G GPM6B Silent p.V123V 0.45 TCGA-UC-A7PI-01 X 153696531 153696531 G A PLXNA3 Silent p.P1309P 0.20 TCGA-UC-A7PI-01 X 69672577 69672577 C T DLG3 Intron 0.34 TCGA-UC-A7PI-01 X 70325980 70325980 G A CXorf65 Silent p.I40I 0.40 TCGA-UC-A7PI-01 X 70597623 70597623 C T TAF1 Silent p.Y315Y 0.34 TCGA-VS-A8EB-01 10 1043242 1043242 C T GTPBP4 Silent p.I185I 0.38 TCGA-VS-A8EB-01 10 134893863 134893863 G C GPR123-AS1 3'Flank 0.38 TCGA-VS-A8EB-01 10 49951318 49951318 C A WDFY4 Silent p.G728G 0.39 TCGA-VS-A8EB-01 10 6154197 6154197 G A RBM17 Missense_Mutation p.M243I 0.24 deleterious(0.01) benign(0.025) TCGA-VS-A8EB-01 10 76868831 76868831 G T DUSP13 Silent p.R29R 0.43 TCGA-VS-A8EB-01 11 124670104 124670104 G A MSANTD2 Missense_Mutation p.S58L 0.75 deleterious_low_confidence(0.04) benign(0.001) TCGA-VS-A8EB-01 11 18330542 18330542 T G HPS5 Silent p.R188R 0.53 TCGA-VS-A8EB-01 11 46912017 46912029 TGTTGCCCCAGTC - LRP4 Frame_Shift_Del p.D572Pfs*235 0.32 TCGA-VS-A8EB-01 11 66625573 66625573 G T LRFN4 Missense_Mutation p.V120F 0.63 deleterious(0.05) possibly_damaging(0.864) TCGA-VS-A8EB-01 11 68522773 68522773 G A CPT1A 3'UTR 0.31 TCGA-VS-A8EB-01 11 71846993 71846993 G A FOLR3 Intron 0.17 TCGA-VS-A8EB-01 12 104645388 104645388 C T TXNRD1 Missense_Mutation p.L59F 0.39 deleterious(0.01) benign(0.22) TCGA-VS-A8EB-01 12 108618632 108618632 G A WSCD2 Missense_Mutation p.E267K 0.50 tolerated(0.35) possibly_damaging(0.825) TCGA-VS-A8EB-01 12 111772465 111772465 G A CUX2 Silent p.T1049T 0.47 TCGA-VS-A8EB-01 12 132476738 132476738 A T EP400 Missense_Mutation p.R900S 0.62 unknown(0) TCGA-VS-A8EB-01 12 20522673 20522673 G A PDE3A Missense_Mutation p.R152H 0.17 deleterious(0.04) probably_damaging(0.98) TCGA-VS-A8EB-01 12 22040844 22040844 G A ABCC9 Silent p.L609L 0.08 TCGA-VS-A8EB-01 12 22040845 22040845 A T ABCC9 Missense_Mutation p.L609H 0.06 deleterious(0.01) probably_damaging(0.967) TCGA-VS-A8EB-01 12 53839947 53839947 C T PRR13 3'UTR 0.39 TCGA-VS-A8EB-01 12 55759566 55759566 G T OR6C75 Silent p.L224L 0.42 TCGA-VS-A8EB-01 12 55759684 55759684 G C OR6C75 Missense_Mutation p.E264Q 0.33 tolerated_low_confidence(0.12) possibly_damaging(0.834) TCGA-VS-A8EB-01 12 55759711 55759711 G C OR6C75 Missense_Mutation p.A273P 0.27 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-VS-A8EB-01 12 6601366 6601366 A T MRPL51 3'UTR 0.24 TCGA-VS-A8EB-01 12 81007580 81007580 G C PTPRQ Missense_Mutation p.E1706Q 0.47 deleterious(0.01) probably_damaging(0.979) TCGA-VS-A8EB-01 13 50066081 50066081 G A SETDB2 3'UTR 0.63 TCGA-VS-A8EB-01 14 45515770 45515770 A C FAM179B Intron 0.37 TCGA-VS-A8EB-01 14 51368575 51368575 G A ABHD12B Missense_Mutation p.R270H 0.33 tolerated(0.52) benign(0.016) TCGA-VS-A8EB-01 14 65268499 65268499 G A SPTB Missense_Mutation p.A207V 0.39 deleterious(0) probably_damaging(1) TCGA-VS-A8EB-01 15 25337015 25337015 A G SNORD116-23 RNA 0.19 TCGA-VS-A8EB-01 15 52497405 52497405 C A MYO5C Intron 0.35 TCGA-VS-A8EB-01 15 72072868 72072868 A G THSD4 3'UTR 0.63 TCGA-VS-A8EB-01 16 11035683 11035683 G A DEXI Silent p.P60P 0.28 TCGA-VS-A8EB-01 16 14973941 14973941 G A NOMO1 Missense_Mutation p.E943K 0.15 tolerated(0.15) benign(0.032) TCGA-VS-A8EB-01 16 18841324 18841324 C G SMG1 Missense_Mutation p.E3019D 0.58 tolerated(0.71) benign(0.007) TCGA-VS-A8EB-01 16 29828031 29828031 C T PAGR1 Missense_Mutation p.S62F 0.36 deleterious(0.04) benign(0.22) TCGA-VS-A8EB-01 16 312436 312436 C T ITFG3 Silent p.C285C 0.11 TCGA-VS-A8EB-01 16 5128804 5128804 C T ALG1 Missense_Mutation p.R263W 0.35 tolerated(0.19) benign(0.009) TCGA-VS-A8EB-01 16 56704434 56704434 C T MT1H Silent p.C15C 0.17 TCGA-VS-A8EB-01 16 56704456 56704456 A G MT1H Missense_Mutation p.K23E 0.15 tolerated(1) unknown(0) TCGA-VS-A8EB-01 16 71061528 71061528 C T HYDIN Missense_Mutation p.E1007K 0.25 probably_damaging(0.956) TCGA-VS-A8EB-01 16 9211461 9211461 C T C16orf72 3'UTR 0.29 TCGA-VS-A8EB-01 17 26972120 26972120 G C KIAA0100 5'UTR 0.14 TCGA-VS-A8EB-01 17 39743105 39743105 G A KRT14 5'UTR 0.21 TCGA-VS-A8EB-01 17 41003259 41003259 G A AOC3 5'UTR 0.16 TCGA-VS-A8EB-01 17 66879950 66879950 C T ABCA8 Missense_Mutation p.R1190K 0.11 deleterious(0.04) benign(0.049) TCGA-VS-A8EB-01 17 8132730 8132730 G T CTC1 Missense_Mutation p.L1016M 0.52 tolerated(0.09) probably_damaging(0.917) TCGA-VS-A8EB-01 19 18085066 18085066 G A KCNN1 Silent p.T123T 0.39 TCGA-VS-A8EB-01 19 1828460 1828460 G A REXO1 Missense_Mutation p.R110W 0.87 deleterious(0.01) possibly_damaging(0.65) TCGA-VS-A8EB-01 19 31770398 31770398 C T TSHZ3 Missense_Mutation p.E101K 0.64 tolerated(0.36) benign(0.039) TCGA-VS-A8EB-01 19 37266369 37266369 C T CTD-2162K18.4 Missense_Mutation p.P72L 0.11 deleterious_low_confidence(0) benign(0) TCGA-VS-A8EB-01 19 37428080 37428080 C T ZNF568 Silent p.F98F 0.09 TCGA-VS-A8EB-01 19 47998593 47998593 G T NAPA Intron 0.60 TCGA-VS-A8EB-01 19 49132630 49132630 C T SPHK2 Missense_Mutation p.P522L 0.57 tolerated(0.07) probably_damaging(0.999) TCGA-VS-A8EB-01 19 5679696 5679696 C T C19orf70 Silent p.K36K 0.72 TCGA-VS-A8EB-01 19 58571386 58571386 C T ZNF135 Intron 0.14 TCGA-VS-A8EB-01 1 155247519 155247519 G A HCN3 Silent p.R46R 0.25 TCGA-VS-A8EB-01 1 165877339 165877339 A T UCK2 3'UTR 0.52 TCGA-VS-A8EB-01 1 203025965 203025965 C T PPFIA4 Missense_Mutation p.S259F 0.17 deleterious(0) benign(0.043) TCGA-VS-A8EB-01 1 27689206 27689206 G A MAP3K6 Missense_Mutation p.S394L 0.44 deleterious(0) probably_damaging(0.938) TCGA-VS-A8EB-01 1 32222058 32222058 C T BAI2 Missense_Mutation p.R127Q 0.16 tolerated(0.34) benign(0.032) TCGA-VS-A8EB-01 1 38197174 38197174 G A EPHA10 Silent p.R524R 0.46 TCGA-VS-A8EB-01 1 61543131 61543131 C T NFIA 5'Flank 0.39 TCGA-VS-A8EB-01 1 6520299 6520299 G A ESPN 3'UTR 0.41 TCGA-VS-A8EB-01 1 6653493 6653493 C T KLHL21 Missense_Mutation p.D576N 0.38 tolerated_low_confidence(0.15) probably_damaging(0.971) TCGA-VS-A8EB-01 20 16359507 16359507 G A KIF16B Missense_Mutation p.S1047L 0.10 tolerated_low_confidence(0.16) benign(0.012) TCGA-VS-A8EB-01 20 44983806 44983806 G C SLC35C2 Missense_Mutation p.F161L 0.18 deleterious(0.01) probably_damaging(0.922) TCGA-VS-A8EB-01 20 61521548 61521548 G C DIDO1 Intron 0.58 TCGA-VS-A8EB-01 20 61522449 61522449 G C DIDO1 Missense_Mutation p.S1135C 0.39 probably_damaging(1) TCGA-VS-A8EB-01 20 62407138 62407138 G A ZBTB46 Missense_Mutation p.A372V 0.23 tolerated(0.29) benign(0.283) TCGA-VS-A8EB-01 21 38308859 38308859 C T HLCS Missense_Mutation p.V296I 0.65 tolerated(0.21) benign(0.001) TCGA-VS-A8EB-01 22 26897951 26897951 G A TFIP11 Missense_Mutation p.S239F 0.84 tolerated(0.7) benign(0.006) TCGA-VS-A8EB-01 22 41568590 41568590 G A EP300 Missense_Mutation p.E1514K 0.89 probably_damaging(0.995) TCGA-VS-A8EB-01 2 112896126 112896126 C T FBLN7 5'UTR 0.38 TCGA-VS-A8EB-01 2 155307449 155307449 C T GALNT13 3'UTR 0.18 TCGA-VS-A8EB-01 2 165956934 165956934 C T SCN3A Missense_Mutation p.V1282I 0.40 tolerated(0.15) benign(0.283) TCGA-VS-A8EB-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.10 TCGA-VS-A8EB-01 2 28268663 28268663 C G BRE Silent p.L189L 0.20 TCGA-VS-A8EB-01 2 42556975 42556975 C T EML4 Silent p.S858S 0.49 TCGA-VS-A8EB-01 2 55573441 55573441 G C CCDC88A Missense_Mutation p.S304C 0.50 deleterious(0) possibly_damaging(0.873) TCGA-VS-A8EB-01 2 61118865 61118865 G A REL Missense_Mutation p.G20R 0.40 deleterious(0) probably_damaging(1) TCGA-VS-A8EB-01 2 80529065 80529065 G T LRRTM1 3'UTR 0.14 TCGA-VS-A8EB-01 2 85804702 85804702 G A VAMP8 5'UTR 0.45 TCGA-VS-A8EB-01 2 85806189 85806189 G T VAMP8 Nonsense_Mutation p.E21* 0.37 TCGA-VS-A8EB-01 3 113049154 113049154 G A WDR52 Missense_Mutation p.S1326L 0.22 tolerated(0.16) benign(0.067) TCGA-VS-A8EB-01 3 119458162 119458162 G A MAATS1 Missense_Mutation p.V508I 0.24 tolerated(0.93) benign(0.006) TCGA-VS-A8EB-01 3 135721524 135721524 C T PPP2R3A Missense_Mutation p.S395L 0.25 tolerated_low_confidence(0.17) probably_damaging(0.977) TCGA-VS-A8EB-01 3 136062735 136062735 T C STAG1 Missense_Mutation p.M1129V 0.11 tolerated(0.52) benign(0.001) TCGA-VS-A8EB-01 3 160804148 160804148 G A B3GALNT1 Missense_Mutation p.S132F 0.30 deleterious(0.01) probably_damaging(0.969) TCGA-VS-A8EB-01 3 174577178 174577178 C T NAALADL2 5'UTR 0.10 TCGA-VS-A8EB-01 3 185190776 185190776 A G MAP3K13 Missense_Mutation p.R553G 0.24 deleterious(0.03) benign(0.089) TCGA-VS-A8EB-01 3 185252722 185252722 G C LIPH Missense_Mutation p.S83C 0.24 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EB-01 3 197574889 197574889 C G LRCH3 Silent p.V509V 0.04 TCGA-VS-A8EB-01 3 56597769 56597769 C G CCDC66 Missense_Mutation p.L54V 0.52 tolerated(0.1) benign(0.126) TCGA-VS-A8EB-01 4 147176579 147176579 C T SLC10A7 3'UTR 0.55 TCGA-VS-A8EB-01 4 2674001 2674001 C T FAM193A Missense_Mutation p.H454Y 0.38 deleterious(0) probably_damaging(0.946) TCGA-VS-A8EB-01 5 160717514 160717514 T C GABRB2 3'UTR 0.52 TCGA-VS-A8EB-01 5 32599096 32599096 C T SUB1 Silent p.R75R 0.38 TCGA-VS-A8EB-01 5 7709409 7709409 G A ADCY2 Missense_Mutation p.R496Q 0.26 tolerated(0.23) benign(0.127) TCGA-VS-A8EB-01 6 117869098 117869098 C T DCBLD1 Intron 0.37 TCGA-VS-A8EB-01 6 128294856 128294856 C T PTPRK Nonsense_Mutation p.W1368* 0.09 TCGA-VS-A8EB-01 6 80744991 80744991 C T TTK Missense_Mutation p.T594M 0.82 deleterious(0) probably_damaging(0.95) TCGA-VS-A8EB-01 6 86321518 86321518 G A SYNCRIP 3'Flank 0.80 TCGA-VS-A8EB-01 7 142626136 142626136 G A TRPV5 Silent p.I189I 0.45 TCGA-VS-A8EB-01 7 151664502 151664502 C A GALNTL5 Silent p.I57I 0.21 TCGA-VS-A8EB-01 7 4824613 4824613 C G AP5Z1 Missense_Mutation p.P289A 0.43 tolerated(0.07) possibly_damaging(0.469) TCGA-VS-A8EB-01 7 48352823 48352823 C T ABCA13 Nonsense_Mutation p.Q3226* 0.41 TCGA-VS-A8EB-01 8 118825182 118825182 G C EXT1 Missense_Mutation p.L551V 0.09 tolerated(0.1) benign(0.062) TCGA-VS-A8EB-01 8 86058043 86058043 G A LRRCC1 3'UTR 0.38 TCGA-VS-A8EB-01 8 95866108 95866108 C G INTS8 Missense_Mutation p.L573V 0.37 deleterious(0.01) possibly_damaging(0.866) TCGA-VS-A8EB-01 8 97622115 97622115 C T SDC2 3'UTR 0.17 TCGA-VS-A8EB-01 9 139837146 139837146 G C FBXW5 Missense_Mutation p.D176E 0.21 tolerated(0.69) benign(0.015) TCGA-VS-A8EB-01 9 140093507 140093507 C T TPRN Missense_Mutation p.E553K 0.23 deleterious(0) probably_damaging(0.997) TCGA-VS-A8EB-01 9 34996272 34996272 C T DNAJB5 Silent p.T188T 0.90 TCGA-VS-A8EB-01 X 125685359 125685359 G A DCAF12L1 Silent p.L411L 0.43 TCGA-VS-A8EB-01 X 125685682 125685682 G A DCAF12L1 Missense_Mutation p.P304S 0.46 deleterious(0.02) probably_damaging(1) TCGA-VS-A8EB-01 X 150157027 150157029 TAT - HMGB3 3'UTR 0.10 TCGA-VS-A8EB-01 X 152158466 152158466 C A PNMA5 3'UTR 0.44 TCGA-VS-A8EB-01 X 153626685 153626685 G A RPL10 5'UTR 0.58 TCGA-VS-A8EC-01 10 105232924 105232924 C T CALHM3 3'UTR 0.59 TCGA-VS-A8EC-01 10 33515072 33515072 T C NRP1 Missense_Mutation p.N376S 0.34 tolerated(0.57) benign(0.001) TCGA-VS-A8EC-01 10 50531571 50531571 C A C10orf71 Silent p.V327V 0.35 TCGA-VS-A8EC-01 10 84745232 84745232 C T NRG3 Silent p.S654S 0.17 TCGA-VS-A8EC-01 10 99229954 99229954 G A MMS19 Silent p.L260L 0.48 TCGA-VS-A8EC-01 11 117352805 117352805 G A DSCAML1 Missense_Mutation p.T871M 0.24 deleterious(0.04) possibly_damaging(0.674) TCGA-VS-A8EC-01 11 118221321 118221321 C T CD3G Missense_Mutation p.A121V 0.21 tolerated(0.07) benign(0.139) TCGA-VS-A8EC-01 11 118888998 118888998 G A RPS25 5'UTR 0.22 TCGA-VS-A8EC-01 11 124189344 124189344 G T OR8D2 Silent p.I250I 0.28 TCGA-VS-A8EC-01 11 124564524 124564524 A T SPA17 3'UTR 0.38 TCGA-VS-A8EC-01 11 16811403 16811403 C T PLEKHA7 Silent p.R1025R 0.22 TCGA-VS-A8EC-01 11 33881009 33881009 C T LMO2 Missense_Mutation p.A193T 0.69 tolerated(0.42) benign(0.004) TCGA-VS-A8EC-01 11 45672013 45672013 C T CHST1 Missense_Mutation p.R154H 0.24 deleterious(0) probably_damaging(0.984) TCGA-VS-A8EC-01 11 58979873 58979873 C T MPEG1 Missense_Mutation p.V156I 0.23 tolerated(0.74) benign(0.009) TCGA-VS-A8EC-01 11 62201168 62201168 C T AHNAK 3'UTR 0.41 TCGA-VS-A8EC-01 11 65381196 65381196 C T MAP3K11 Missense_Mutation p.S11N 0.30 deleterious_low_confidence(0.01) benign(0.162) TCGA-VS-A8EC-01 11 65625734 65625734 G A CFL1 5'UTR 0.57 TCGA-VS-A8EC-01 12 104458319 104458319 G C HCFC2 5'UTR 0.41 TCGA-VS-A8EC-01 12 10954935 10954935 C T TAS2R7 Missense_Mutation p.G79S 0.40 tolerated(0.47) benign(0.321) TCGA-VS-A8EC-01 12 111064249 111064249 C T TCTN1 Missense_Mutation p.L142F 0.09 deleterious(0.01) probably_damaging(0.927) TCGA-VS-A8EC-01 12 111779749 111779749 G A CUX2 Missense_Mutation p.R1184Q 0.19 deleterious(0) benign(0.382) TCGA-VS-A8EC-01 12 120600899 120600899 C A GCN1L1 Silent p.L671L 0.36 TCGA-VS-A8EC-01 12 13061489 13061489 G A GPRC5A Silent p.G102G 0.29 TCGA-VS-A8EC-01 12 22046976 22046976 C T ABCC9 Missense_Mutation p.A598T 0.20 deleterious(0.01) possibly_damaging(0.891) TCGA-VS-A8EC-01 12 22623828 22623828 G A C2CD5 Silent p.V792V 0.42 TCGA-VS-A8EC-01 12 33031294 33031294 C A PKP2 Missense_Mutation p.A174S 0.50 tolerated(0.16) benign(0.05) TCGA-VS-A8EC-01 12 48877138 48877138 A G C12orf54 Missense_Mutation p.Q20R 0.17 tolerated(0.16) possibly_damaging(0.607) TCGA-VS-A8EC-01 12 56600475 56600475 C T RNF41 Missense_Mutation p.G237D 0.07 tolerated(0.09) benign(0.019) TCGA-VS-A8EC-01 12 6981681 6981681 C T SPSB2 Missense_Mutation p.E129K 0.46 deleterious(0.05) probably_damaging(0.998) TCGA-VS-A8EC-01 13 111531959 111531959 G A ANKRD10 3'UTR 0.29 TCGA-VS-A8EC-01 13 20978319 20978319 G A CRYL1 Silent p.D303D 0.53 TCGA-VS-A8EC-01 13 21557730 21557730 C T LATS2 Silent p.L705L 0.30 TCGA-VS-A8EC-01 13 25373548 25373548 T C RNF17 Missense_Mutation p.V472A 0.29 tolerated(0.07) probably_damaging(0.959) TCGA-VS-A8EC-01 13 31205255 31205255 G A USPL1 Missense_Mutation p.R171Q 0.45 tolerated(1) benign(0) TCGA-VS-A8EC-01 13 32527373 32527373 G A EEF1DP3 RNA 0.42 TCGA-VS-A8EC-01 13 52960203 52960203 C T THSD1 Missense_Mutation p.M380I 0.30 tolerated(0.32) benign(0.002) TCGA-VS-A8EC-01 13 52971685 52971685 C T THSD1 Missense_Mutation p.D235N 0.28 tolerated(0.24) benign(0.157) TCGA-VS-A8EC-01 13 88328562 88328562 C T SLITRK5 Missense_Mutation p.H307Y 0.25 tolerated(0.45) benign(0.424) TCGA-VS-A8EC-01 14 101348812 101348812 G A RTL1 Missense_Mutation p.R772C 0.86 deleterious(0.05) benign(0.041) TCGA-VS-A8EC-01 14 24739237 24739252 GCAGCCAGCATCGGTG - RABGGTA Frame_Shift_Del p.H112* 0.29 TCGA-VS-A8EC-01 14 36097071 36097071 T C RALGAPA1 Missense_Mutation p.M1522V 0.33 deleterious(0) probably_damaging(0.959) TCGA-VS-A8EC-01 14 42356177 42356177 G A LRFN5 Missense_Mutation p.D117N 0.54 deleterious(0.03) possibly_damaging(0.519) TCGA-VS-A8EC-01 14 67802225 67802225 G A MPP5 3'UTR 0.70 TCGA-VS-A8EC-01 14 81209612 81209612 C A CEP128 Splice_Site p.X872_splice 0.73 TCGA-VS-A8EC-01 14 93399078 93399078 G A CHGA Missense_Mutation p.R391Q 0.17 deleterious(0) possibly_damaging(0.898) TCGA-VS-A8EC-01 15 25476051 25476051 G A SNORD115-33 RNA 0.42 TCGA-VS-A8EC-01 15 41194919 41194919 G A VPS18 Missense_Mutation p.E768K 0.28 tolerated(1) benign(0.006) TCGA-VS-A8EC-01 15 41247697 41247697 G T CHAC1 Missense_Mutation p.D174Y 0.33 deleterious(0.01) probably_damaging(0.926) TCGA-VS-A8EC-01 15 56657715 56657715 C T TEX9 Intron 0.26 TCGA-VS-A8EC-01 15 64687627 64687627 A C TRIP4 Missense_Mutation p.H101P 0.20 tolerated(0.2) benign(0) TCGA-VS-A8EC-01 15 65688428 65688428 G A IGDCC4 Silent p.R357R 0.42 TCGA-VS-A8EC-01 15 66411506 66411506 C T MEGF11 Silent p.A73A 0.21 TCGA-VS-A8EC-01 15 67629323 67629323 C T IQCH Missense_Mutation p.S133L 0.17 tolerated(0.18) benign(0.001) TCGA-VS-A8EC-01 16 2089851 2089851 C T NTHL1 3'UTR 0.14 TCGA-VS-A8EC-01 16 24979994 24979994 G A ARHGAP17 Silent p.Y124Y 0.19 TCGA-VS-A8EC-01 16 30958058 30958059 AG - FBXL19 Frame_Shift_Del p.S567Pfs*119 0.13 TCGA-VS-A8EC-01 16 47252797 47252797 A T ITFG1 Missense_Mutation p.Y479N 0.42 tolerated(0.33) possibly_damaging(0.534) TCGA-VS-A8EC-01 16 4787894 4787894 G A C16orf71 Missense_Mutation p.D75N 0.45 tolerated(0.62) benign(0.169) TCGA-VS-A8EC-01 16 58199502 58199502 C G CSNK2A2 Missense_Mutation p.R313T 0.37 deleterious(0) probably_damaging(1) TCGA-VS-A8EC-01 16 69366675 69366675 C T COG8 Silent p.P508P 0.30 TCGA-VS-A8EC-01 16 69752391 69752391 G A NQO1 Silent p.F18F 0.35 TCGA-VS-A8EC-01 16 88798889 88798894 GGCGCC - PIEZO1 In_Frame_Del p.R947_R948del 0.33 TCGA-VS-A8EC-01 17 10261118 10261118 C T MYH13 Silent p.Q224Q 0.06 TCGA-VS-A8EC-01 17 1782853 1782853 G A RPA1 Splice_Site p.X318_splice 0.55 TCGA-VS-A8EC-01 17 26522963 26522963 C A NLK 3'UTR 0.15 TCGA-VS-A8EC-01 17 29233275 29233275 G T TEFM 5'UTR 0.18 TCGA-VS-A8EC-01 17 33749149 33749149 C T SLFN12 Missense_Mutation p.G300E 0.37 deleterious(0) probably_damaging(1) TCGA-VS-A8EC-01 17 3560044 3560044 G A CTNS Silent p.A212A 0.33 TCGA-VS-A8EC-01 17 42477066 42477066 T C GPATCH8 Silent p.S793S 0.44 TCGA-VS-A8EC-01 17 4794988 4794988 C T MINK1 Missense_Mutation p.P660S 0.56 tolerated(0.38) benign(0.004) TCGA-VS-A8EC-01 17 65029280 65029280 C T CACNG4 3'UTR 0.12 TCGA-VS-A8EC-01 17 73565155 73565155 G A LLGL2 Silent p.T473T 0.55 TCGA-VS-A8EC-01 17 7760716 7760716 G A LSMD1 Missense_Mutation p.A9V 0.44 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-VS-A8EC-01 17 8216491 8216491 C T ARHGEF15 Missense_Mutation p.R285C 0.53 deleterious(0.01) possibly_damaging(0.719) TCGA-VS-A8EC-01 18 5392392 5392392 G C EPB41L3 3'UTR 0.48 TCGA-VS-A8EC-01 19 10579810 10579810 G A PDE4A 3'Flank 0.21 TCGA-VS-A8EC-01 19 17370737 17370737 G T USHBP1 Missense_Mutation p.S246Y 0.42 deleterious(0.02) probably_damaging(0.979) TCGA-VS-A8EC-01 19 17444296 17444296 G A ANO8 Silent p.I95I 0.22 TCGA-VS-A8EC-01 19 20727545 20727545 C A ZNF737 Missense_Mutation p.K488N 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A8EC-01 19 35898753 35898753 G A AC002511.1 RNA 0.13 TCGA-VS-A8EC-01 19 39322068 39322068 G A ECH1 Silent p.L47L 0.33 TCGA-VS-A8EC-01 19 39330958 39330959 - G HNRNPL Frame_Shift_Ins p.P338Tfs*56 0.28 TCGA-VS-A8EC-01 19 41063075 41063075 G C SPTBN4 Silent p.L1812L 0.50 TCGA-VS-A8EC-01 19 42222127 42222127 G A CEACAM5 Missense_Mutation p.A440T 0.40 tolerated(0.38) possibly_damaging(0.594) TCGA-VS-A8EC-01 19 42383163 42383163 C T CD79A Silent p.N61N 0.40 TCGA-VS-A8EC-01 19 49110475 49110475 G A SPACA4 Silent p.R80R 0.15 TCGA-VS-A8EC-01 19 51021909 51021909 A T LRRC4B Missense_Mutation p.L354Q 0.15 deleterious(0) probably_damaging(0.992) TCGA-VS-A8EC-01 19 52327457 52327457 C T FPR3 Silent p.F152F 0.37 TCGA-VS-A8EC-01 19 52658952 52658952 C T ZNF836 Missense_Mutation p.G662R 0.50 tolerated(0.06) probably_damaging(1) TCGA-VS-A8EC-01 19 54803202 54803202 C T LILRA3 Missense_Mutation p.E159K 0.21 deleterious(0.04) possibly_damaging(0.779) TCGA-VS-A8EC-01 19 57840652 57840652 C G ZNF543 3'UTR 0.33 TCGA-VS-A8EC-01 19 58601317 58601317 C T ZSCAN18 Silent p.R162R 0.42 TCGA-VS-A8EC-01 19 5867718 5867718 C T AC024592.12 Missense_Mutation p.S139N 0.21 deleterious_low_confidence(0.01) benign(0.393) TCGA-VS-A8EC-01 19 7705802 7705802 G T STXBP2 Silent p.L114L 0.19 TCGA-VS-A8EC-01 19 8615500 8615500 C T MYO1F Missense_Mutation p.G284R 0.50 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EC-01 1 111506509 111506509 C T LRIF1 5'UTR 0.44 TCGA-VS-A8EC-01 1 114133124 114133124 C T MAGI3 Missense_Mutation p.S261F 0.32 deleterious(0.02) possibly_damaging(0.782) TCGA-VS-A8EC-01 1 114483245 114483245 A G HIPK1 Silent p.A80A 0.59 TCGA-VS-A8EC-01 1 115284191 115284191 G A CSDE1 Missense_Mutation p.S32F 0.41 tolerated_low_confidence(0.18) benign(0.144) TCGA-VS-A8EC-01 1 137915 137915 G A AL627309.1 3'UTR 0.42 TCGA-VS-A8EC-01 1 149905748 149905748 C T MTMR11 Silent p.P257P 0.34 TCGA-VS-A8EC-01 1 151143488 151143488 C T TMOD4 Missense_Mutation p.E260K 0.62 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EC-01 1 173947753 173947753 C T RC3H1 Silent p.Q325Q 0.63 TCGA-VS-A8EC-01 1 216850583 216850583 C T ESRRG Missense_Mutation p.D108N 0.58 tolerated(0.07) possibly_damaging(0.69) TCGA-VS-A8EC-01 1 230820926 230820926 C T COG2 Missense_Mutation p.R442C 0.35 deleterious(0) probably_damaging(0.953) TCGA-VS-A8EC-01 1 237780705 237780705 C T RYR2 Silent p.N1945N 0.63 TCGA-VS-A8EC-01 1 237897050 237897050 G A RYR2 Missense_Mutation p.M3695I 0.18 benign(0.269) TCGA-VS-A8EC-01 1 2938751 2938751 C T ACTRT2 Silent p.V167V 0.43 TCGA-VS-A8EC-01 1 2939360 2939360 C T ACTRT2 Silent p.S370S 0.31 TCGA-VS-A8EC-01 1 32265647 32265647 G A SPOCD1 Silent p.G566G 0.30 TCGA-VS-A8EC-01 1 36642430 36642430 G T MAP7D1 Missense_Mutation p.A456S 0.27 benign(0.074) TCGA-VS-A8EC-01 1 43817973 43817973 C T MPL Missense_Mutation p.P551L 0.61 tolerated(0.08) benign(0.007) TCGA-VS-A8EC-01 1 47144186 47144186 C T EFCAB14 Missense_Mutation p.D479N 0.42 tolerated(0.11) benign(0.036) TCGA-VS-A8EC-01 1 89271720 89271720 G A PKN2 Intron 0.32 TCGA-VS-A8EC-01 1 93312835 93312835 C T FAM69A Missense_Mutation p.E127K 0.34 tolerated(0.06) benign(0.146) TCGA-VS-A8EC-01 1 978683 978683 C T AGRN Silent p.N483N 0.43 TCGA-VS-A8EC-01 20 19955522 19955522 A T RIN2 Missense_Mutation p.S334C 0.22 tolerated(0.09) possibly_damaging(0.774) TCGA-VS-A8EC-01 20 31294414 31294414 C T COMMD7 Missense_Mutation p.E103K 0.55 deleterious(0) probably_damaging(0.951) TCGA-VS-A8EC-01 20 31294555 31294555 C T COMMD7 Silent p.L83L 0.62 TCGA-VS-A8EC-01 20 32378922 32378922 C T ZNF341 Missense_Mutation p.R715C 0.10 deleterious(0) probably_damaging(0.97) TCGA-VS-A8EC-01 20 33442653 33442654 - C GGT7 Frame_Shift_Ins p.F393Lfs*36 0.10 TCGA-VS-A8EC-01 20 44049196 44049196 C T PIGT Missense_Mutation p.P299L 0.25 tolerated(0.27) benign(0.012) TCGA-VS-A8EC-01 20 60549957 60549957 G A TAF4 3'UTR 0.57 TCGA-VS-A8EC-01 20 60963244 60963244 C T RPS21 Intron 0.24 TCGA-VS-A8EC-01 20 60963417 60963417 C G RPS21 Nonsense_Mutation p.S80* 0.30 TCGA-VS-A8EC-01 21 22910467 22910467 C A NCAM2 3'UTR 0.23 TCGA-VS-A8EC-01 21 34399740 34399740 C T OLIG2 Silent p.G190G 0.43 TCGA-VS-A8EC-01 21 47544834 47544834 G A COL6A2 Silent p.T590T 0.30 TCGA-VS-A8EC-01 22 21989236 21989236 G A CCDC116 Missense_Mutation p.R295H 0.55 tolerated(0.08) benign(0.198) TCGA-VS-A8EC-01 22 31535914 31535914 C T PLA2G3 Missense_Mutation p.G143R 0.65 tolerated(0.61) benign(0.022) TCGA-VS-A8EC-01 22 37898707 37898707 G A CARD10 Silent p.S563S 0.73 TCGA-VS-A8EC-01 22 50703772 50703772 C T MAPK11 Silent p.E331E 0.35 TCGA-VS-A8EC-01 2 102965549 102965549 C T IL1RL1 Silent p.L376L 0.59 TCGA-VS-A8EC-01 2 144765000 144765000 C T GTDC1 Silent p.Q208Q 0.16 TCGA-VS-A8EC-01 2 152695894 152695894 C G CACNB4 Splice_Site p.X435_splice 0.27 TCGA-VS-A8EC-01 2 1652810 1652810 G A PXDN Silent p.N914N 0.19 TCGA-VS-A8EC-01 2 169948328 169948328 G A DHRS9 Missense_Mutation p.V201I 0.28 tolerated(0.08) probably_damaging(0.912) TCGA-VS-A8EC-01 2 179566903 179566903 G A TTN Missense_Mutation p.T10168M 0.28 TCGA-VS-A8EC-01 2 18099138 18099138 G A KCNS3 Intron 0.19 TCGA-VS-A8EC-01 2 226378233 226378233 C T NYAP2 Missense_Mutation p.S123L 0.12 deleterious(0) possibly_damaging(0.902) TCGA-VS-A8EC-01 2 26360185 26360185 C T RAB10 3'UTR 0.29 TCGA-VS-A8EC-01 2 3743382 3743382 C A ALLC Missense_Mutation p.A196E 0.58 tolerated(0.1) benign(0) TCGA-VS-A8EC-01 2 86317013 86317013 G A POLR1A Missense_Mutation p.R158W 0.20 deleterious(0) possibly_damaging(0.512) TCGA-VS-A8EC-01 2 9568917 9568917 G T CPSF3 Missense_Mutation p.R25I 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A8EC-01 2 98206052 98206052 G C ANKRD36B RNA 0.30 TCGA-VS-A8EC-01 3 100535431 100535431 A T ABI3BP Intron 0.15 TCGA-VS-A8EC-01 3 112357002 112357002 T C CCDC80 Missense_Mutation p.K584R 0.15 tolerated(0.18) probably_damaging(0.98) TCGA-VS-A8EC-01 3 124930181 124930181 A G SLC12A8 Missense_Mutation p.S5P 0.24 tolerated(0.06) benign(0.001) TCGA-VS-A8EC-01 3 151599488 151599488 G A SUCNR1 3'UTR 0.15 TCGA-VS-A8EC-01 3 156254640 156254640 C T KCNAB1 3'UTR 0.14 TCGA-VS-A8EC-01 3 159713479 159713479 C T IL12A 3'UTR 0.13 TCGA-VS-A8EC-01 3 170784398 170784398 C A TNIK Missense_Mutation p.V1276L 0.94 tolerated(0.09) probably_damaging(0.989) TCGA-VS-A8EC-01 3 184007228 184007228 G A ECE2 Missense_Mutation p.E578K 0.92 tolerated(0.14) probably_damaging(0.999) TCGA-VS-A8EC-01 3 187420027 187420027 G A RTP2 5'UTR 0.94 TCGA-VS-A8EC-01 3 197402320 197402320 C G KIAA0226 Missense_Mutation p.E905Q 0.99 tolerated(0.49) benign(0.086) TCGA-VS-A8EC-01 3 4940392 4940392 G A BHLHE40-AS1 Intron 0.10 TCGA-VS-A8EC-01 3 99569904 99569904 G A FILIP1L Silent p.L206L 0.10 TCGA-VS-A8EC-01 4 139965876 139965876 G A CCRN4L Missense_Mutation p.E182K 0.96 deleterious(0) probably_damaging(0.934) TCGA-VS-A8EC-01 4 144391131 144391131 G A GAB1 3'UTR 0.30 TCGA-VS-A8EC-01 4 23796938 23796938 A - PPARGC1A 3'UTR 0.36 TCGA-VS-A8EC-01 4 499698 499698 C T PIGG Silent p.F184F 0.38 TCGA-VS-A8EC-01 5 140167265 140167265 G A PCDHA1 Missense_Mutation p.V464M 0.31 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-VS-A8EC-01 5 140174801 140174801 G T PCDHA2 Missense_Mutation p.L84F 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VS-A8EC-01 5 145718613 145718613 G A POU4F3 5'UTR 0.46 TCGA-VS-A8EC-01 5 145838567 145838567 G A TCERG1 Missense_Mutation p.A187T 0.58 tolerated_low_confidence(0.52) unknown(0) TCGA-VS-A8EC-01 5 14709906 14709906 G A ANKH 3'UTR 0.23 TCGA-VS-A8EC-01 5 154200965 154200965 T C FAXDC2 Missense_Mutation p.I234V 0.21 tolerated(0.76) benign(0.002) TCGA-VS-A8EC-01 5 157240162 157240162 G A CLINT1 Silent p.D142D 0.25 TCGA-VS-A8EC-01 5 178045558 178045558 G A CLK4 Missense_Mutation p.S128L 0.34 tolerated(0.14) benign(0.029) TCGA-VS-A8EC-01 5 44809033 44809033 G A MRPS30 5'UTR 0.36 TCGA-VS-A8EC-01 5 56215988 56215988 C T MIER3 3'UTR 0.62 TCGA-VS-A8EC-01 5 644469 644469 C T CEP72 Missense_Mutation p.S532L 0.20 deleterious(0.01) possibly_damaging(0.808) TCGA-VS-A8EC-01 5 76250012 76250012 G A CRHBP Splice_Site p.X111_splice 0.36 TCGA-VS-A8EC-01 6 133783848 133783848 C T EYA4 Missense_Mutation p.P224S 0.23 tolerated(1) probably_damaging(0.968) TCGA-VS-A8EC-01 6 16290814 16290814 C T GMPR Silent p.T273T 0.26 TCGA-VS-A8EC-01 6 22147445 22147445 C A CASC15 RNA 0.22 TCGA-VS-A8EC-01 6 3105900 3105900 G A RIPK1 Silent p.Q397Q 0.88 TCGA-VS-A8EC-01 6 31826997 31826997 C T NEU1 3'UTR 1.00 TCGA-VS-A8EC-01 6 44243400 44243400 C A TMEM151B Missense_Mutation p.D279E 0.29 tolerated(0.1) benign(0.107) TCGA-VS-A8EC-01 6 82927824 82927824 G A IBTK Silent p.L427L 0.87 TCGA-VS-A8EC-01 6 86197164 86197164 G A NT5E Missense_Mutation p.R354H 0.91 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EC-01 7 131844352 131844352 C T PLXNA4 Missense_Mutation p.E1514K 0.33 deleterious(0.01) possibly_damaging(0.476) TCGA-VS-A8EC-01 7 2962268 2962270 CTT - CARD11 In_Frame_Del p.E756del 0.21 TCGA-VS-A8EC-01 7 76653028 76653028 C T UPK3B 3'Flank 0.82 TCGA-VS-A8EC-01 7 83592635 83592635 C G SEMA3A Missense_Mutation p.E582D 0.37 tolerated(0.15) benign(0.004) TCGA-VS-A8EC-01 8 100866298 100866298 C T VPS13B Missense_Mutation p.R3586W 0.40 deleterious(0.01) possibly_damaging(0.689) TCGA-VS-A8EC-01 8 133037024 133037024 C T OC90 Splice_Site p.X380_splice 0.27 TCGA-VS-A8EC-01 8 134049149 134049149 G A SLA 3'Flank 0.34 TCGA-VS-A8EC-01 8 143853734 143853734 C T LYNX1 Intron 0.31 TCGA-VS-A8EC-01 8 145668524 145668524 C A TONSL Nonsense_Mutation p.E149* 0.64 TCGA-VS-A8EC-01 8 52366183 52366183 C T PXDNL Missense_Mutation p.G382E 0.20 deleterious(0) probably_damaging(0.972) TCGA-VS-A8EC-01 8 67759489 67759489 G C SGK3 Missense_Mutation p.S379T 0.19 tolerated(0.41) benign(0.001) TCGA-VS-A8EC-01 8 95531576 95531576 C A KIAA1429 Missense_Mutation p.G717V 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A8EC-01 9 100616330 100616330 G A FOXE1 Missense_Mutation p.R45H 0.17 deleterious(0) benign(0.105) TCGA-VS-A8EC-01 9 103062986 103062986 G A INVS 3'UTR 0.47 TCGA-VS-A8EC-01 9 116811095 116811095 C T ZNF618 Missense_Mutation p.R412C 0.41 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EC-01 9 124091255 124091255 C T GSN Missense_Mutation p.R668C 0.15 deleterious(0) probably_damaging(1) TCGA-VS-A8EC-01 9 139391212 139391212 G A NOTCH1 Missense_Mutation p.R2327W 0.37 tolerated(0.18) probably_damaging(0.972) TCGA-VS-A8EC-01 9 139820277 139820277 A C TRAF2 Missense_Mutation p.K477T 0.20 deleterious(0.01) benign(0.024) TCGA-VS-A8EC-01 9 139906430 139906430 C T ABCA2 Missense_Mutation p.V1801M 0.25 deleterious(0.02) probably_damaging(0.989) TCGA-VS-A8EC-01 9 26961948 26961948 G A IFT74 Intron 0.21 TCGA-VS-A8EC-01 9 34691262 34691262 G C CCL19 5'UTR 0.52 TCGA-VS-A8EC-01 9 88916459 88916459 C T ZCCHC6 Silent p.K1384K 0.11 TCGA-VS-A8EC-01 9 91617305 91617305 G A S1PR3 3'UTR 0.17 TCGA-VS-A8EC-01 X 101910118 101910118 G T GPRASP1 Missense_Mutation p.S426I 0.13 tolerated(0.19) benign(0.015) TCGA-VS-A8EC-01 X 110988024 110988024 C T ALG13 Missense_Mutation p.P942S 0.43 tolerated(0.08) benign(0.004) TCGA-VS-A8EC-01 X 113818809 113818809 C T HTR2C 5'UTR 0.11 TCGA-VS-A8EC-01 X 118223017 118223017 G C KIAA1210 Missense_Mutation p.Q726E 0.39 deleterious(0.04) benign(0.231) TCGA-VS-A8EC-01 X 118223093 118223093 G A KIAA1210 Silent p.I700I 0.35 TCGA-VS-A8EC-01 X 118223315 118223315 G T KIAA1210 Missense_Mutation p.F626L 0.32 tolerated(0.19) benign(0.023) TCGA-VS-A8EC-01 X 139099453 139099453 G C RP11-364B14.1 RNA 0.25 TCGA-VS-A8EC-01 X 144909305 144909305 C A TMEM257 Missense_Mutation p.P37Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-VS-A8EC-01 X 151935871 151935871 G A MAGEA3 Missense_Mutation p.P99L 0.13 deleterious(0.01) benign(0.206) TCGA-VS-A8EC-01 X 151935872 151935872 G T MAGEA3 Missense_Mutation p.P99T 0.13 tolerated(0.1) benign(0.206) TCGA-VS-A8EC-01 X 152954215 152954215 C G SLC6A8 Missense_Mutation p.I62M 0.51 tolerated(0.09) possibly_damaging(0.869) TCGA-VS-A8EC-01 X 153009083 153009083 G T ABCD1 Missense_Mutation p.R711L 0.23 tolerated(0.06) benign(0.001) TCGA-VS-A8EC-01 X 153533747 153533747 G A TKTL1 Missense_Mutation p.D76N 0.42 tolerated(0.99) benign(0.009) TCGA-VS-A8EC-01 X 154133184 154133184 C T F8 Missense_Mutation p.E1830K 0.25 deleterious(0.05) probably_damaging(0.997) TCGA-VS-A8EC-01 X 54841833 54841833 C T MAGED2 Silent p.A513A 0.39 TCGA-VS-A8EC-01 X 78622733 78622733 G A ITM2A 5'UTR 0.40 TCGA-VS-A8EG-01 11 131781354 131781354 G A NTM 5'Flank 0.55 TCGA-VS-A8EG-01 11 18655781 18655781 C A SPTY2D1 Missense_Mutation p.M8I 0.48 tolerated(0.37) benign(0) TCGA-VS-A8EG-01 11 432029 432029 C T ANO9 Missense_Mutation p.V126I 0.44 tolerated(1) benign(0.016) TCGA-VS-A8EG-01 11 64428559 64428559 G A NRXN2 Silent p.S617S 0.05 TCGA-VS-A8EG-01 12 53186498 53186498 G A KRT3 Silent p.D340D 0.41 TCGA-VS-A8EG-01 12 56385940 56385940 G T RAB5B Missense_Mutation p.G198C 0.28 deleterious(0) possibly_damaging(0.819) TCGA-VS-A8EG-01 12 67699740 67699740 C T CAND1 Silent p.V764V 0.22 TCGA-VS-A8EG-01 13 46808365 46808365 G A LRRC63 Missense_Mutation p.V291I 0.07 tolerated(0.4) benign(0.029) TCGA-VS-A8EG-01 15 100692904 100692904 C T ADAMTS17 Silent p.P462P 0.39 TCGA-VS-A8EG-01 15 102516831 102516831 A C DDX11L9 RNA 0.31 TCGA-VS-A8EG-01 15 65674425 65674429 TCTTC CTTCT IGDCC4 3'UTR 0.15 TCGA-VS-A8EG-01 15 66604089 66604089 T A DIS3L Missense_Mutation p.L196I 0.45 deleterious(0.01) benign(0.091) TCGA-VS-A8EG-01 15 90171706 90171706 G A KIF7 Missense_Mutation p.R1326W 0.36 tolerated(0.09) benign(0.007) TCGA-VS-A8EG-01 15 91579263 91579263 C T AC068831.10 RNA 0.39 TCGA-VS-A8EG-01 16 76555102 76555102 G A CNTNAP4 Missense_Mutation p.G738R 0.06 deleterious(0) probably_damaging(0.989) TCGA-VS-A8EG-01 17 11556307 11556307 C T DNAH9 Silent p.H861H 0.43 TCGA-VS-A8EG-01 17 38636063 38636063 G A TNS4 Silent p.S591S 0.41 TCGA-VS-A8EG-01 18 67563239 67563239 G A CD226 Missense_Mutation p.S142L 0.47 tolerated(0.06) benign(0.298) TCGA-VS-A8EG-01 18 74091429 74091429 C T ZNF516 Missense_Mutation p.G881S 0.54 tolerated(0.17) benign(0.035) TCGA-VS-A8EG-01 19 58879625 58879625 C T ZNF837 Missense_Mutation p.G359R 0.30 deleterious(0) possibly_damaging(0.537) TCGA-VS-A8EG-01 1 110754218 110754218 G A KCNC4 Missense_Mutation p.E33K 0.46 tolerated(0.05) benign(0.268) TCGA-VS-A8EG-01 1 152128179 152128179 T G RPTN Missense_Mutation p.T466P 0.22 deleterious(0) benign(0.046) TCGA-VS-A8EG-01 1 16736107 16736107 G A SPATA21 Silent p.Y192Y 0.31 TCGA-VS-A8EG-01 1 204957844 204957844 G A NFASC Missense_Mutation p.V893M 0.61 deleterious(0) probably_damaging(0.956) TCGA-VS-A8EG-01 1 26612412 26612412 G A UBXN11 Missense_Mutation p.R226W 0.61 deleterious(0.01) possibly_damaging(0.886) TCGA-VS-A8EG-01 1 41289821 41289821 C T KCNQ4 Missense_Mutation p.R395W 0.31 deleterious(0.03) benign(0.003) TCGA-VS-A8EG-01 1 64125506 64125506 C T PGM1 3'UTR 0.35 TCGA-VS-A8EG-01 1 6653586 6653586 G A KLHL21 Missense_Mutation p.R545W 0.24 deleterious(0.01) possibly_damaging(0.828) TCGA-VS-A8EG-01 1 6679955 6679955 G A PHF13 Silent p.A78A 0.38 TCGA-VS-A8EG-01 22 21062322 21062322 G A PI4KA 3'UTR 0.18 TCGA-VS-A8EG-01 22 36684870 36684873 AACC T MYH9 In_Frame_Del p.R1557_L1558delinsQ 0.40 TCGA-VS-A8EG-01 22 45607874 45607874 G A KIAA0930 Missense_Mutation p.A65V 0.42 tolerated(0.4) benign(0.05) TCGA-VS-A8EG-01 2 131116545 131116545 C T PTPN18 Missense_Mutation p.P67S 0.24 tolerated(0.06) possibly_damaging(0.736) TCGA-VS-A8EG-01 2 181846888 181846890 CTT - UBE2E3 In_Frame_Del p.S41del 0.39 TCGA-VS-A8EG-01 2 188296084 188296084 G A CALCRL 5'UTR 0.27 TCGA-VS-A8EG-01 2 25463182 25463182 G A DNMT3A Nonsense_Mutation p.R771* 0.42 TCGA-VS-A8EG-01 2 38603395 38603395 T C ATL2 Intron 0.31 TCGA-VS-A8EG-01 3 111870792 111870792 C T SLC9C1 Missense_Mutation p.A1146T 0.29 tolerated_low_confidence(0.42) benign(0.016) TCGA-VS-A8EG-01 3 132075796 132075796 G T ACPP Intron 0.20 TCGA-VS-A8EG-01 3 141497202 141497202 G A GRK7 Missense_Mutation p.D26N 0.22 tolerated(0.5) benign(0.064) TCGA-VS-A8EG-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.62 deleterious(0.02) probably_damaging(0.959) TCGA-VS-A8EG-01 3 179526194 179526194 G A PEX5L Silent p.L462L 0.22 TCGA-VS-A8EG-01 3 184056352 184056352 G A FAM131A Intron 0.17 TCGA-VS-A8EG-01 3 185361568 185361568 T C IGF2BP2 3'UTR 0.04 TCGA-VS-A8EG-01 3 53820920 53820920 C T CACNA1D Missense_Mutation p.R1642W 0.52 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EG-01 4 176554204 176554204 A T GPM6A 3'UTR 0.75 TCGA-VS-A8EG-01 4 76465081 76465081 A G THAP6 Missense_Mutation p.R143G 0.06 tolerated_low_confidence(0.34) unknown(0) TCGA-VS-A8EG-01 5 132197337 132197337 A G GDF9 Missense_Mutation p.S437P 0.05 deleterious(0) probably_damaging(1) TCGA-VS-A8EG-01 5 140056996 140056996 C T HARS Missense_Mutation p.E247K 0.38 tolerated(0.16) benign(0.066) TCGA-VS-A8EG-01 5 140626536 140626536 A T PCDHB15 Missense_Mutation p.N464Y 0.38 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-VS-A8EG-01 6 139564283 139564283 C G TXLNB Missense_Mutation p.E479Q 0.39 deleterious(0.04) possibly_damaging(0.467) TCGA-VS-A8EG-01 6 42946199 42946200 CT - PEX6 Frame_Shift_Del p.E230Vfs*11 0.47 TCGA-VS-A8EG-01 7 128097952 128097952 A G HILPDA 3'UTR 0.38 TCGA-VS-A8EG-01 7 152551606 152551606 C T ACTR3B Missense_Mutation p.R409C 0.47 deleterious(0.02) probably_damaging(0.982) TCGA-VS-A8EG-01 8 144919601 144919601 G A NRBP2 Missense_Mutation p.R352C 0.39 tolerated(0.1) benign(0.001) TCGA-VS-A8EG-01 8 665886 665886 G A ERICH1 Silent p.S48S 0.33 TCGA-VS-A8EG-01 8 69728146 69728146 T A C8orf34 Silent p.V525V 0.31 TCGA-VS-A8EG-01 9 101751487 101751487 G A COL15A1 Missense_Mutation p.E251K 0.38 deleterious(0.01) benign(0.081) TCGA-VS-A8EG-01 9 125143678 125143678 C G PTGS1 Silent p.L175L 0.41 TCGA-VS-A8EG-01 9 79325236 79325236 G A PRUNE2 Missense_Mutation p.R652W 0.38 deleterious(0) probably_damaging(1) TCGA-VS-A8EG-01 9 94485125 94485125 A G ROR2 3'UTR 0.56 TCGA-VS-A8EG-01 X 140995960 140995960 C T MAGEC1 Nonsense_Mutation p.Q924* 0.28 TCGA-VS-A8EG-01 X 149895724 149895724 A T MTMR1 Silent p.A122A 0.32 TCGA-VS-A8EH-01 10 107022135 107022135 G A SORCS3 Missense_Mutation p.E1164K 0.31 deleterious(0) probably_damaging(0.928) TCGA-VS-A8EH-01 10 116070172 116070172 C T AFAP1L2 Missense_Mutation p.E275K 0.21 tolerated(0.1) benign(0.285) TCGA-VS-A8EH-01 10 15255283 15255283 G A FAM171A1 Silent p.P768P 0.32 TCGA-VS-A8EH-01 10 79626804 79626833 ATGCCCAGGAAGAGCACAGAGATACTGTTG TTA AL391421.1 In_Frame_Del p.D34_D44delinsVN 0.56 TCGA-VS-A8EH-01 10 79626833 79626833 G A AL391421.1 Missense_Mutation p.D44N 0.62 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-VS-A8EH-01 11 128843351 128843351 A G ARHGAP32 Intron 0.67 TCGA-VS-A8EH-01 11 47611291 47611291 C T C1QTNF4 3'UTR 0.27 TCGA-VS-A8EH-01 11 59282688 59282688 G A OR4D9 Missense_Mutation p.M101I 0.36 tolerated(1) benign(0.008) TCGA-VS-A8EH-01 11 64112083 64112083 C G CCDC88B Silent p.V690V 0.19 TCGA-VS-A8EH-01 11 64112118 64112118 C A CCDC88B Nonsense_Mutation p.S702* 0.15 TCGA-VS-A8EH-01 11 67079466 67079466 A C SSH3 3'UTR 0.18 TCGA-VS-A8EH-01 11 93463272 93463272 A C KIAA1731 Missense_Mutation p.E2575D 0.54 tolerated(0.24) benign(0.006) TCGA-VS-A8EH-01 12 110973322 110973322 G A PPTC7 3'UTR 0.27 TCGA-VS-A8EH-01 12 15260814 15260814 C T RERG 3'UTR 0.50 TCGA-VS-A8EH-01 12 49160279 49160279 C T ADCY6 3'UTR 0.59 TCGA-VS-A8EH-01 12 54925353 54925353 C T NCKAP1L Silent p.L895L 0.06 TCGA-VS-A8EH-01 12 97334279 97334279 A G NEDD1 Missense_Mutation p.S411G 0.53 deleterious(0.02) benign(0.346) TCGA-VS-A8EH-01 13 25362205 25362205 G A RNF17 Missense_Mutation p.E231K 0.07 deleterious(0.01) possibly_damaging(0.899) TCGA-VS-A8EH-01 13 26788443 26788443 C A RNF6 Missense_Mutation p.D526Y 0.07 deleterious(0.05) benign(0.001) TCGA-VS-A8EH-01 13 26789493 26789493 C G RNF6 Missense_Mutation p.D176H 0.12 tolerated(0.22) benign(0.395) TCGA-VS-A8EH-01 13 26789508 26789508 C A RNF6 Missense_Mutation p.D171Y 0.09 deleterious(0.01) benign(0.153) TCGA-VS-A8EH-01 14 22005251 22005251 C T SALL2 5'UTR 0.14 TCGA-VS-A8EH-01 15 89856152 89856152 G A FANCI Silent p.L1223L 0.40 TCGA-VS-A8EH-01 15 91477646 91477646 C T UNC45A 5'Flank 0.57 TCGA-VS-A8EH-01 16 28367964 28367964 G A NPIPB6 Intron 0.15 TCGA-VS-A8EH-01 16 58077213 58077213 C T MMP15 Missense_Mutation p.T468M 0.26 deleterious(0.03) benign(0.322) TCGA-VS-A8EH-01 17 30986303 30986303 C G MYO1D Silent p.L725L 0.16 TCGA-VS-A8EH-01 17 36636124 36636124 G T ARHGAP23 Missense_Mutation p.D877Y 0.11 deleterious(0) benign(0.282) TCGA-VS-A8EH-01 17 76988787 76988787 C T CANT1 3'UTR 0.20 TCGA-VS-A8EH-01 18 31319412 31319412 C T ASXL3 Missense_Mutation p.P682S 0.33 probably_damaging(0.999) TCGA-VS-A8EH-01 18 333058 333058 G A COLEC12 Silent p.F634F 0.14 TCGA-VS-A8EH-01 18 6311558 6311558 G A L3MBTL4 Missense_Mutation p.R23C 0.06 tolerated(0.19) benign(0) TCGA-VS-A8EH-01 18 6943269 6943269 C A LAMA1 Missense_Mutation p.V2993F 0.25 deleterious(0) probably_damaging(0.986) TCGA-VS-A8EH-01 19 12758381 12758381 G A MAN2B1 Missense_Mutation p.S899L 0.50 deleterious(0.03) benign(0.225) TCGA-VS-A8EH-01 19 13910657 13910657 G A ZSWIM4 Missense_Mutation p.E93K 0.16 tolerated(0.27) possibly_damaging(0.519) TCGA-VS-A8EH-01 19 41248467 41248467 G T C19orf54 Missense_Mutation p.N309K 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A8EH-01 19 53270019 53270019 G C ZNF600 Nonsense_Mutation p.Y330* 0.38 TCGA-VS-A8EH-01 19 53958056 53958056 T C ZNF761 RNA 0.27 TCGA-VS-A8EH-01 1 100547565 100547565 A G HIAT1 Missense_Mutation p.I425V 0.57 tolerated(0.73) possibly_damaging(0.785) TCGA-VS-A8EH-01 1 114515667 114515667 C T HIPK1 Missense_Mutation p.P1056S 0.34 tolerated(0.78) benign(0) TCGA-VS-A8EH-01 1 145075742 145075742 G A PDE4DIP Nonsense_Mutation p.Q41* 0.17 TCGA-VS-A8EH-01 1 147380937 147380937 G T GJA8 Silent p.G285G 0.18 TCGA-VS-A8EH-01 1 156043733 156043733 G A MEX3A 3'UTR 0.08 TCGA-VS-A8EH-01 1 203194977 203194977 C A CHIT1 Missense_Mutation p.C26F 0.26 deleterious(0) probably_damaging(0.984) TCGA-VS-A8EH-01 1 205492350 205492350 C T CDK18 Missense_Mutation p.R19C 0.28 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-VS-A8EH-01 1 231060661 231060661 C T TTC13 Silent p.S549S 0.12 TCGA-VS-A8EH-01 1 237947200 237947200 C T RYR2 Missense_Mutation p.T4063M 0.19 possibly_damaging(0.787) TCGA-VS-A8EH-01 1 237957189 237957189 G C RYR2 Missense_Mutation p.R4602P 0.13 probably_damaging(0.936) TCGA-VS-A8EH-01 1 245849316 245849316 G A KIF26B Missense_Mutation p.A1011T 0.17 tolerated(0.33) unknown(0) TCGA-VS-A8EH-01 1 32385176 32385176 G A PTP4A2 5'UTR 0.26 TCGA-VS-A8EH-01 1 68944984 68944984 C T DEPDC1 Missense_Mutation p.R652Q 0.21 deleterious(0.04) possibly_damaging(0.885) TCGA-VS-A8EH-01 1 762863 762863 C A LINC00115 RNA 0.31 TCGA-VS-A8EH-01 1 7796600 7796600 G A CAMTA1 Missense_Mutation p.R1088H 0.27 deleterious(0) probably_damaging(0.996) TCGA-VS-A8EH-01 20 14307665 14307665 C T FLRT3 Missense_Mutation p.R163H 0.42 deleterious(0) probably_damaging(1) TCGA-VS-A8EH-01 20 37547668 37547668 C T PPP1R16B 3'UTR 0.14 TCGA-VS-A8EH-01 20 42345003 42345003 C A MYBL2 3'UTR 0.39 TCGA-VS-A8EH-01 22 17590536 17590536 G A IL17RA Silent p.T809T 0.28 TCGA-VS-A8EH-01 22 19222068 19222068 A G CLTCL1 Silent p.Y377Y 0.14 TCGA-VS-A8EH-01 22 39529663 39529663 G - CBX7 3'UTR 0.33 TCGA-VS-A8EH-01 2 109374869 109374869 A G RANBP2 Missense_Mutation p.K823E 0.35 tolerated(0.12) benign(0.001) TCGA-VS-A8EH-01 2 168727255 168727255 C T B3GALT1 3'UTR 0.22 TCGA-VS-A8EH-01 2 178098799 178098799 T G NFE2L2 Missense_Mutation p.E82D 0.50 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EH-01 2 202609148 202609148 C A ALS2 Missense_Mutation p.G668V 0.35 deleterious(0) probably_damaging(0.984) TCGA-VS-A8EH-01 2 242432361 242432361 T C FARP2 Silent p.Y935Y 0.30 TCGA-VS-A8EH-01 2 27887261 27887261 G A SLC4A1AP Silent p.Q214Q 0.51 TCGA-VS-A8EH-01 2 73456064 73456064 C T PRADC1 Missense_Mutation p.R102Q 0.25 tolerated(0.3) benign(0.167) TCGA-VS-A8EH-01 3 129389363 129389363 C T TMCC1 Missense_Mutation p.A441T 0.11 tolerated(0.24) benign(0.072) TCGA-VS-A8EH-01 3 170606680 170606680 C G EIF5A2 3'UTR 0.19 TCGA-VS-A8EH-01 3 183994478 183994478 C G ECE2 Intron 0.89 TCGA-VS-A8EH-01 3 195516488 195516488 C T MUC4 Missense_Mutation p.V655I 0.05 unknown(0) TCGA-VS-A8EH-01 3 35725740 35725740 C T ARPP21 Intron 0.48 TCGA-VS-A8EH-01 3 97851850 97851850 G A OR5H1 Silent p.S103S 0.81 TCGA-VS-A8EH-01 4 10509589 10509589 C T CLNK Silent p.E326E 0.33 TCGA-VS-A8EH-01 4 106650626 106650626 G A GSTCD Missense_Mutation p.V404I 0.46 tolerated(0.13) benign(0) TCGA-VS-A8EH-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.26 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EH-01 4 26661235 26661235 G T TBC1D19 Missense_Mutation p.R166L 0.32 deleterious(0.01) possibly_damaging(0.581) TCGA-VS-A8EH-01 4 41689925 41689925 C T LIMCH1 Missense_Mutation p.S1002L 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-VS-A8EH-01 4 4322666 4322666 G A ZBTB49 Missense_Mutation p.V641M 0.28 tolerated(0.24) benign(0.014) TCGA-VS-A8EH-01 5 114859821 114859821 G A FEM1C 3'UTR 0.34 TCGA-VS-A8EH-01 5 140605292 140605292 G A PCDHB14 Missense_Mutation p.V739M 0.12 deleterious_low_confidence(0.02) benign(0.177) TCGA-VS-A8EH-01 5 140755833 140755833 C T PCDHGA6 Missense_Mutation p.S728L 0.34 deleterious_low_confidence(0) benign(0.022) TCGA-VS-A8EH-01 5 168199865 168199865 G A SLIT3 Silent p.S460S 0.37 TCGA-VS-A8EH-01 5 21802459 21802459 C T CDH12 Missense_Mutation p.R358Q 0.25 tolerated(0.13) possibly_damaging(0.735) TCGA-VS-A8EH-01 5 41195915 41195915 C T C6 Missense_Mutation p.S189N 0.13 tolerated(0.13) benign(0.014) TCGA-VS-A8EH-01 6 107980097 107980097 C T SOBP 3'UTR 0.49 TCGA-VS-A8EH-01 6 159636155 159636155 T C FNDC1 Silent p.D213D 0.29 TCGA-VS-A8EH-01 6 29323654 29323654 A G OR5V1 Missense_Mutation p.F107L 0.24 tolerated(1) benign(0.296) TCGA-VS-A8EH-01 6 43316167 43316167 C T ZNF318 Silent p.Q989Q 0.21 TCGA-VS-A8EH-01 7 105641973 105641973 C T CDHR3 Missense_Mutation p.A260V 0.54 deleterious(0.03) probably_damaging(1) TCGA-VS-A8EH-01 7 154760285 154760285 C G PAXIP1 Missense_Mutation p.Q542H 0.12 tolerated(0.13) unknown(0) TCGA-VS-A8EH-01 7 6661643 6661643 G T ZNF853 Nonsense_Mutation p.E341* 0.28 TCGA-VS-A8EH-01 7 82508678 82508678 C T PCLO Silent p.A4543A 0.25 TCGA-VS-A8EH-01 8 120633732 120633732 C G ENPP2 Missense_Mutation p.R107T 0.39 deleterious(0.01) possibly_damaging(0.894) TCGA-VS-A8EH-01 8 142366893 142366893 C T GPR20 3'UTR 0.60 TCGA-VS-A8EH-01 8 20112578 20112578 C T LZTS1 Missense_Mutation p.D39N 0.33 deleterious(0) probably_damaging(0.995) TCGA-VS-A8EH-01 8 22885860 22885860 C T TNFRSF10B Silent p.L244L 0.23 TCGA-VS-A8EH-01 8 61654492 61654492 G A CHD7 Silent p.P167P 0.23 TCGA-VS-A8EH-01 8 75147444 75147444 C T JPH1 3'UTR 0.17 TCGA-VS-A8EH-01 8 99224679 99224679 T C NIPAL2 Silent p.K203K 0.05 TCGA-VS-A8EH-01 9 132565661 132565661 G C TOR1B Missense_Mutation p.C57S 0.35 deleterious(0.01) probably_damaging(0.958) TCGA-VS-A8EH-01 9 16409687 16409687 A G BNC2 3'UTR 0.22 TCGA-VS-A8EH-01 9 43861145 43861145 G A CNTNAP3B Silent p.A673A 0.30 TCGA-VS-A8EH-01 9 73001790 73001790 C T KLF9 3'UTR 0.23 TCGA-VS-A8EH-01 9 95078189 95078189 T G NOL8 Silent p.R240R 0.17 TCGA-VS-A8EH-01 9 95609319 95609319 C T ZNF484 Missense_Mutation p.E586K 0.30 tolerated(0.05) probably_damaging(0.991) TCGA-VS-A8EH-01 X 106084034 106084034 C T TBC1D8B Nonsense_Mutation p.Q547* 0.25 TCGA-VS-A8EH-01 X 110970165 110970165 C G ALG13 Missense_Mutation p.H620D 0.18 tolerated(0.27) possibly_damaging(0.598) TCGA-VS-A8EH-01 X 132352036 132352036 G C TFDP3 Silent p.A84A 0.41 TCGA-VS-A8EH-01 X 133700323 133700323 C T PLAC1 Missense_Mutation p.M130I 0.19 tolerated(0.32) benign(0.02) TCGA-VS-A8EH-01 X 151934911 151934911 C A MAGEA3 3'UTR 0.10 TCGA-VS-A8EH-01 X 49859438 49859438 A G CLCN5 3'UTR 0.32 TCGA-VS-A8EH-01 X 69722189 69722189 C T DLG3 3'UTR 0.17 TCGA-VS-A8EH-01 X 82763329 82763329 G A POU3F4 5'UTR 0.16 TCGA-VS-A8EH-01 X 90691587 90691587 G A PABPC5 Silent p.V337V 0.14 TCGA-VS-A8EI-01 10 13698660 13698660 G C FRMD4A Missense_Mutation p.P977A 0.17 tolerated_low_confidence(0.14) benign(0.079) TCGA-VS-A8EI-01 10 27356123 27356123 C G ANKRD26 Missense_Mutation p.L390F 0.09 deleterious(0.05) possibly_damaging(0.778) TCGA-VS-A8EI-01 10 43656037 43656037 T C CSGALNACT2 Missense_Mutation p.V325A 0.08 tolerated(0.09) benign(0.12) TCGA-VS-A8EI-01 11 130286871 130286871 C T ADAMTS8 Missense_Mutation p.G354R 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A8EI-01 11 314066 314066 C T IFITM1 5'UTR 0.33 TCGA-VS-A8EI-01 11 33612881 33612881 G T KIAA1549L Silent p.L1258L 0.19 TCGA-VS-A8EI-01 11 55761480 55761480 C T OR5F1 Missense_Mutation p.V208M 0.18 tolerated(0.22) benign(0.217) TCGA-VS-A8EI-01 11 60899867 60899867 C T VPS37C Missense_Mutation p.E165K 0.20 tolerated(0.15) possibly_damaging(0.804) TCGA-VS-A8EI-01 11 71712578 71712578 G A IL18BP Missense_Mutation p.V163I 0.32 tolerated(0.57) benign(0.007) TCGA-VS-A8EI-01 11 73675980 73675980 G C DNAJB13 Missense_Mutation p.R131P 0.16 tolerated(0.09) benign(0.006) TCGA-VS-A8EI-01 11 83585512 83585512 C T DLG2 Missense_Mutation p.A506T 0.15 tolerated(0.59) benign(0.016) TCGA-VS-A8EI-01 12 12875174 12875174 C G CDKN1B 3'UTR 0.11 TCGA-VS-A8EI-01 12 130881991 130881991 C T RIMBP2 3'UTR 0.09 TCGA-VS-A8EI-01 12 131466566 131466566 C T GPR133 Missense_Mutation p.R150W 0.14 deleterious(0) probably_damaging(0.993) TCGA-VS-A8EI-01 12 29709861 29709861 C T TMTC1 Missense_Mutation p.M535I 0.09 tolerated(0.39) benign(0.026) TCGA-VS-A8EI-01 12 4639128 4639128 G C C12orf4 Missense_Mutation p.S138C 0.12 deleterious(0.04) possibly_damaging(0.905) TCGA-VS-A8EI-01 12 64868057 64868057 G A TBK1 Silent p.K196K 0.21 TCGA-VS-A8EI-01 12 7470645 7470645 C G ACSM4 Nonsense_Mutation p.S263* 0.12 TCGA-VS-A8EI-01 12 78443882 78443883 - T NAV3 Splice_Site p.X711_splice 0.21 TCGA-VS-A8EI-01 13 32805373 32805373 G C FRY Missense_Mutation p.K1821N 0.15 deleterious(0) possibly_damaging(0.898) TCGA-VS-A8EI-01 13 96743447 96743447 G A HS6ST3 Missense_Mutation p.D111N 0.15 tolerated(0.12) unknown(0) TCGA-VS-A8EI-01 14 102931501 102931501 G A TECPR2 Missense_Mutation p.A1222T 0.18 tolerated(0.24) benign(0.02) TCGA-VS-A8EI-01 14 24629785 24629785 G C RNF31 3'UTR 0.22 TCGA-VS-A8EI-01 14 39819404 39819404 C G CTAGE5 Nonsense_Mutation p.S789* 0.14 TCGA-VS-A8EI-01 14 45433042 45433042 G C FAM179B Missense_Mutation p.C473S 0.23 tolerated(0.81) benign(0.004) TCGA-VS-A8EI-01 14 60752401 60752401 G A PPM1A Silent p.S371S 0.36 TCGA-VS-A8EI-01 14 70991213 70991213 G A ADAM20 Missense_Mutation p.P138S 0.18 tolerated(0.34) benign(0.172) TCGA-VS-A8EI-01 14 71137824 71137824 G T TTC9 Silent p.T207T 0.28 TCGA-VS-A8EI-01 14 72090797 72090797 C T SIPA1L1 Silent p.D554D 0.19 TCGA-VS-A8EI-01 14 73732166 73732166 C T PAPLN Missense_Mutation p.P1045S 0.16 tolerated(0.56) probably_damaging(0.923) TCGA-VS-A8EI-01 14 74753215 74753215 C T ABCD4 Silent p.L590L 0.08 TCGA-VS-A8EI-01 15 25963509 25963509 C A ATP10A Missense_Mutation p.E467D 0.22 tolerated(0.42) benign(0.267) TCGA-VS-A8EI-01 15 49320798 49320798 C G SECISBP2L Missense_Mutation p.R249T 0.14 deleterious(0.05) probably_damaging(0.998) TCGA-VS-A8EI-01 15 85112913 85112913 G C UBE2Q2P1 RNA 0.08 TCGA-VS-A8EI-01 15 86291108 86291108 C G AKAP13 3'Flank 0.09 TCGA-VS-A8EI-01 16 11348559 11348559 G C SOCS1 3'UTR 0.25 TCGA-VS-A8EI-01 16 16267223 16267223 G A ABCC6 Missense_Mutation p.S902L 0.11 tolerated(0.13) benign(0.003) TCGA-VS-A8EI-01 16 20396025 20396025 C T PDILT Silent p.K117K 0.28 TCGA-VS-A8EI-01 16 30077191 30077191 C G ALDOA Intron 0.19 TCGA-VS-A8EI-01 16 74368829 74368829 G A RP11-252A24.2 3'Flank 0.25 TCGA-VS-A8EI-01 16 79632718 79632718 G A MAF Missense_Mutation p.S361L 0.38 deleterious(0) probably_damaging(0.927) TCGA-VS-A8EI-01 17 18907093 18907093 G A FAM83G Nonsense_Mutation p.Q88* 0.14 TCGA-VS-A8EI-01 17 26898381 26898381 C G PIGS Intron 0.08 TCGA-VS-A8EI-01 17 5266239 5266239 T G RABEP1 Silent p.R532R 0.17 TCGA-VS-A8EI-01 17 5418149 5418149 C T NLRP1 Silent p.K1449K 0.28 TCGA-VS-A8EI-01 17 63193343 63193343 C G RGS9 Silent p.L320L 0.08 TCGA-VS-A8EI-01 17 72540854 72540854 C T CD300C Silent p.E98E 0.16 TCGA-VS-A8EI-01 17 73911211 73911211 G A FBF1 Missense_Mutation p.R824W 0.13 deleterious(0.01) benign(0.006) TCGA-VS-A8EI-01 17 79514493 79514493 G A C17orf70 Nonsense_Mutation p.Q539* 0.23 TCGA-VS-A8EI-01 18 14530553 14530553 C T POTEC Splice_Site p.X352_splice 0.11 TCGA-VS-A8EI-01 18 47527672 47527672 C T MYO5B Missense_Mutation p.E189K 0.12 tolerated(0.14) benign(0.039) TCGA-VS-A8EI-01 19 1073590 1073590 G A HMHA1 Splice_Site p.X233_splice 0.36 TCGA-VS-A8EI-01 19 12886245 12886245 C G HOOK2 Missense_Mutation p.E7Q 0.10 tolerated(0.07) benign(0.259) TCGA-VS-A8EI-01 19 14952626 14952626 C T OR7A10 Missense_Mutation p.E22K 0.17 tolerated_low_confidence(0.06) benign(0.006) TCGA-VS-A8EI-01 19 15219999 15219999 A C SYDE1 Missense_Mutation p.Q74P 0.13 deleterious(0) probably_damaging(0.997) TCGA-VS-A8EI-01 19 18543848 18543848 G A SSBP4 Missense_Mutation p.A303T 0.10 tolerated_low_confidence(0.14) possibly_damaging(0.902) TCGA-VS-A8EI-01 19 2477539 2477539 C T GADD45B Silent p.Y141Y 0.14 TCGA-VS-A8EI-01 19 2763680 2763680 C T SGTA Silent p.P156P 0.10 TCGA-VS-A8EI-01 19 2997792 2997792 G A TLE2 3'UTR 0.30 TCGA-VS-A8EI-01 19 3747982 3747982 C T TJP3 Missense_Mutation p.P847L 0.10 tolerated(0.38) benign(0.005) TCGA-VS-A8EI-01 19 38167261 38167261 G C ZNF781 Intron 0.07 TCGA-VS-A8EI-01 19 39232437 39232437 G C CAPN12 Silent p.L180L 0.09 TCGA-VS-A8EI-01 19 43032498 43032498 C G CEACAM1 Missense_Mutation p.R10T 0.15 tolerated(0.06) possibly_damaging(0.573) TCGA-VS-A8EI-01 19 44610553 44610553 C A ZNF224 Missense_Mutation p.D80E 0.09 tolerated(0.83) benign(0.001) TCGA-VS-A8EI-01 19 4538577 4538577 G A LRG1 Missense_Mutation p.A140V 0.08 tolerated(0.08) benign(0.423) TCGA-VS-A8EI-01 19 45656311 45656311 C G NKPD1 Missense_Mutation p.D462H 0.08 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EI-01 19 47124047 47124047 G A PTGIR 3'UTR 0.05 TCGA-VS-A8EI-01 19 47124175 47124175 G A PTGIR 3'UTR 0.08 TCGA-VS-A8EI-01 19 47207508 47207508 G A PRKD2 Silent p.I269I 0.17 TCGA-VS-A8EI-01 19 49536266 49536266 G A CGB2 Missense_Mutation p.V94M 0.11 deleterious(0) probably_damaging(0.946) TCGA-VS-A8EI-01 19 55658381 55658381 G C TNNT1 Missense_Mutation p.P14R 0.07 tolerated_low_confidence(0.51) unknown(0) TCGA-VS-A8EI-01 19 6420104 6420104 C A KHSRP Missense_Mutation p.C176F 0.10 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EI-01 19 6472909 6472909 C A DENND1C Silent p.L383L 0.21 TCGA-VS-A8EI-01 19 7081401 7081401 C T ZNF557 Missense_Mutation p.S93F 0.11 tolerated(0.07) benign(0.196) TCGA-VS-A8EI-01 19 7987224 7987224 C T SNAPC2 Missense_Mutation p.S226L 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A8EI-01 19 8562694 8562694 G A PRAM1 Silent p.D510D 0.12 TCGA-VS-A8EI-01 19 9064839 9064839 G T MUC16 Missense_Mutation p.P7536Q 0.28 unknown(0) TCGA-VS-A8EI-01 1 103474056 103474056 G A COL11A1 Missense_Mutation p.S549F 0.13 unknown(0) TCGA-VS-A8EI-01 1 116931257 116931257 A G ATP1A1 Intron 0.38 TCGA-VS-A8EI-01 1 120351476 120351476 G C REG4 5'UTR 0.20 TCGA-VS-A8EI-01 1 152648556 152648556 C T LCE2C Missense_Mutation p.P22L 0.19 deleterious_low_confidence(0) unknown(0) TCGA-VS-A8EI-01 1 153752328 153752328 C G SLC27A3 Missense_Mutation p.F681L 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-VS-A8EI-01 1 161007484 161007484 C T TSTD1 3'UTR 0.23 TCGA-VS-A8EI-01 1 16902822 16902822 G A NBPF1 Nonsense_Mutation p.Q687* 0.04 TCGA-VS-A8EI-01 1 170043582 170043582 G C KIFAP3 Silent p.L9L 0.17 TCGA-VS-A8EI-01 1 174188312 174188312 C A RABGAP1L Nonsense_Mutation p.S6* 0.15 TCGA-VS-A8EI-01 1 179072938 179072938 C T ABL2 3'UTR 0.12 TCGA-VS-A8EI-01 1 186136045 186136045 G A HMCN1 Missense_Mutation p.R5182Q 0.31 probably_damaging(0.986) TCGA-VS-A8EI-01 1 214788178 214788178 G A CENPF Missense_Mutation p.E56K 0.15 benign(0.145) TCGA-VS-A8EI-01 1 215990376 215990376 G C USH2A Missense_Mutation p.S3178C 0.29 benign(0.246) TCGA-VS-A8EI-01 1 23110906 23110906 G A EPHB2 Missense_Mutation p.D50N 0.19 deleterious(0.02) possibly_damaging(0.534) TCGA-VS-A8EI-01 1 241725603 241725603 G A KMO Missense_Mutation p.E196K 0.11 deleterious(0) probably_damaging(1) TCGA-VS-A8EI-01 1 246518363 246518363 G A SMYD3 Silent p.R66R 0.11 TCGA-VS-A8EI-01 1 36386582 36386582 C G AGO1 3'UTR 0.12 TCGA-VS-A8EI-01 1 47501812 47501812 G C CYP4X1 Missense_Mutation p.Q248H 0.15 tolerated(0.57) probably_damaging(0.937) TCGA-VS-A8EI-01 20 2127817 2127817 G C STK35 3'UTR 0.11 TCGA-VS-A8EI-01 20 42143763 42143763 C T L3MBTL1 Missense_Mutation p.S184F 0.16 tolerated(0.27) benign(0.004) TCGA-VS-A8EI-01 20 49558585 49558585 C G DPM1 Missense_Mutation p.L159F 0.33 tolerated(0.35) benign(0.028) TCGA-VS-A8EI-01 20 60573210 60573210 C T TAF4 Silent p.L984L 0.14 TCGA-VS-A8EI-01 20 9460146 9460146 G C PLCB4 3'UTR 0.11 TCGA-VS-A8EI-01 22 19001878 19001878 G A DGCR9 5'Flank 0.07 TCGA-VS-A8EI-01 22 38120755 38120755 G A TRIOBP Missense_Mutation p.R731K 0.21 deleterious_low_confidence(0.03) benign(0.364) TCGA-VS-A8EI-01 22 41265000 41265000 C G XPNPEP3 Intron 0.26 TCGA-VS-A8EI-01 22 50722059 50722059 G A PLXNB2 Nonsense_Mutation p.Q848* 0.21 TCGA-VS-A8EI-01 2 108917337 108917337 G C SULT1C2 Intron 0.20 TCGA-VS-A8EI-01 2 112539985 112539985 C T ANAPC1 Silent p.Q1721Q 0.32 TCGA-VS-A8EI-01 2 131674216 131674216 A C ARHGEF4 5'Flank 0.08 TCGA-VS-A8EI-01 2 167133643 167133643 C T SCN9A Nonsense_Mutation p.W897* 0.14 TCGA-VS-A8EI-01 2 170062040 170062040 C G LRP2 Missense_Mutation p.G2555A 0.24 benign(0.341) TCGA-VS-A8EI-01 2 173362725 173362725 C G ITGA6 Nonsense_Mutation p.S1004* 0.12 TCGA-VS-A8EI-01 2 179443986 179443986 G C TTN Missense_Mutation p.L22591V 0.19 TCGA-VS-A8EI-01 2 187466838 187466838 T C ITGAV Silent p.S92S 0.15 TCGA-VS-A8EI-01 2 191828075 191828075 C G GLS 3'UTR 0.17 TCGA-VS-A8EI-01 2 241537333 241537333 C T CAPN10 Missense_Mutation p.A591V 0.30 tolerated(0.34) benign(0.008) TCGA-VS-A8EI-01 2 62069357 62069357 C T FAM161A Missense_Mutation p.E108K 0.18 tolerated(0.09) benign(0.169) TCGA-VS-A8EI-01 2 74600063 74600063 G A DCTN1 Nonsense_Mutation p.R149* 0.33 TCGA-VS-A8EI-01 3 108301919 108301919 C T KIAA1524 Missense_Mutation p.E88K 0.15 deleterious(0.02) possibly_damaging(0.511) TCGA-VS-A8EI-01 3 136676858 136676858 C G IL20RB 5'UTR 0.30 TCGA-VS-A8EI-01 3 151163865 151163865 T C IGSF10 Missense_Mutation p.I1302V 0.27 tolerated(0.37) benign(0.006) TCGA-VS-A8EI-01 3 158363502 158363502 G C GFM1 Missense_Mutation p.D56H 0.08 deleterious(0) probably_damaging(1) TCGA-VS-A8EI-01 3 164727178 164727178 G A SI Silent p.S1356S 0.11 TCGA-VS-A8EI-01 3 167405047 167405047 G A PDCD10 Silent p.L178L 0.15 TCGA-VS-A8EI-01 3 174000130 174000130 C G NLGN1 3'UTR 0.09 TCGA-VS-A8EI-01 3 179597798 179597798 C T PEX5L Missense_Mutation p.D142N 0.09 deleterious_low_confidence(0) possibly_damaging(0.595) TCGA-VS-A8EI-01 3 183638987 183638987 C T ABCC5 3'UTR 0.15 TCGA-VS-A8EI-01 3 186302351 186302351 G C DNAJB11 Missense_Mutation p.E329Q 0.07 tolerated(0.5) benign(0.396) TCGA-VS-A8EI-01 3 187419948 187419948 C T RTP2 5'UTR 0.15 TCGA-VS-A8EI-01 3 195506015 195506015 G C MUC4 Missense_Mutation p.P4146A 0.08 unknown(0) TCGA-VS-A8EI-01 3 21706428 21706428 A G ZNF385D Missense_Mutation p.F39L 0.20 deleterious(0.03) possibly_damaging(0.827) TCGA-VS-A8EI-01 3 42917623 42917623 C G CYP8B1 5'UTR 0.21 TCGA-VS-A8EI-01 4 164069513 164069513 G C NAF1 Nonsense_Mutation p.S205* 0.11 TCGA-VS-A8EI-01 4 1976594 1976594 G A WHSC1 Missense_Mutation p.R1126H 0.12 deleterious(0) probably_damaging(1) TCGA-VS-A8EI-01 5 133915287 133915287 C G JADE2 3'UTR 0.38 TCGA-VS-A8EI-01 5 133915642 133915642 C G JADE2 3'UTR 0.19 TCGA-VS-A8EI-01 5 133997079 133997079 C T SEC24A Missense_Mutation p.S123F 0.11 deleterious_low_confidence(0) benign(0.429) TCGA-VS-A8EI-01 5 157106929 157106929 C T C5orf52 Silent p.L134L 0.09 TCGA-VS-A8EI-01 5 161309663 161309663 T A GABRA1 Missense_Mutation p.L220H 0.06 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EI-01 5 35704730 35704730 G A SPEF2 Missense_Mutation p.G825R 0.10 tolerated(0.5) benign(0.015) TCGA-VS-A8EI-01 6 106969055 106969055 G A AIM1 Silent p.L916L 0.10 TCGA-VS-A8EI-01 6 110062692 110062692 G C FIG4 Missense_Mutation p.R274T 0.24 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EI-01 6 134582997 134582997 C G SGK1 Intron 0.14 TCGA-VS-A8EI-01 6 161127478 161127478 G C PLG Missense_Mutation p.G30A 0.04 deleterious(0) probably_damaging(1) TCGA-VS-A8EI-01 6 16239004 16239004 G C GMPR Missense_Mutation p.R27P 0.11 deleterious(0.01) possibly_damaging(0.715) TCGA-VS-A8EI-01 6 27775571 27775571 G A HIST1H2BL Silent p.Y38Y 0.09 TCGA-VS-A8EI-01 6 30458199 30458199 G C HLA-E Missense_Mutation p.E173Q 0.10 tolerated_low_confidence(0.35) possibly_damaging(0.771) TCGA-VS-A8EI-01 6 3129314 3129314 G C BPHL Missense_Mutation p.W138C 0.15 deleterious(0) probably_damaging(0.997) TCGA-VS-A8EI-01 6 42796958 42796958 T A GLTSCR1L Missense_Mutation p.I296N 0.19 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EI-01 6 43742123 43742123 C T VEGFA Missense_Mutation p.H218Y 0.09 tolerated(0.07) benign(0.037) TCGA-VS-A8EI-01 6 44361266 44361266 C T CDC5L Missense_Mutation p.P132L 0.31 deleterious(0) possibly_damaging(0.831) TCGA-VS-A8EI-01 6 74202026 74202026 G C MTO1 Missense_Mutation p.L609F 0.17 tolerated(0.19) benign(0.299) TCGA-VS-A8EI-01 6 80411584 80411584 G C SH3BGRL2 3'UTR 0.10 TCGA-VS-A8EI-01 7 113518619 113518619 G T PPP1R3A Missense_Mutation p.T843K 0.29 tolerated(0.27) possibly_damaging(0.477) TCGA-VS-A8EI-01 7 129680907 129680907 G C ZC3HC1 Missense_Mutation p.S98C 0.11 deleterious(0.04) benign(0.187) TCGA-VS-A8EI-01 7 150269276 150269276 G A GIMAP4 Missense_Mutation p.G40R 0.29 deleterious(0.02) probably_damaging(1) TCGA-VS-A8EI-01 7 151871216 151871216 C G KMT2C Missense_Mutation p.R3125T 0.38 probably_damaging(0.998) TCGA-VS-A8EI-01 7 21678623 21678623 C G DNAH11 Missense_Mutation p.F1633L 0.14 possibly_damaging(0.853) TCGA-VS-A8EI-01 7 2703912 2703912 C G TTYH3 3'UTR 0.17 TCGA-VS-A8EI-01 7 73246189 73246189 C G CLDN4 3'UTR 0.16 TCGA-VS-A8EI-01 7 73246309 73246309 G A CLDN4 3'UTR 0.19 TCGA-VS-A8EI-01 7 73536629 73536629 C G LIMK1 3'UTR 0.26 TCGA-VS-A8EI-01 7 76828775 76828775 G A FGL2 Silent p.N112N 0.25 TCGA-VS-A8EI-01 7 86509806 86509806 G C KIAA1324L Nonsense_Mutation p.S1024* 0.19 TCGA-VS-A8EI-01 7 99581020 99581020 C T AZGP1P1 RNA 0.13 TCGA-VS-A8EI-01 8 104948860 104948860 C T RIMS2 Silent p.V819V 0.20 TCGA-VS-A8EI-01 8 21977674 21977674 G C HR Nonsense_Mutation p.S930* 0.14 TCGA-VS-A8EI-01 8 42323416 42323416 C T SLC20A2 Silent p.L103L 0.17 TCGA-VS-A8EI-01 8 55533617 55533617 C T RP1 Missense_Mutation p.H31Y 0.11 deleterious(0) possibly_damaging(0.61) TCGA-VS-A8EI-01 8 71593459 71593459 C T XKR9 Nonsense_Mutation p.Q56* 0.12 TCGA-VS-A8EI-01 8 77775691 77775691 G C ZFHX4 Missense_Mutation p.Q3247H 0.15 probably_damaging(0.989) TCGA-VS-A8EI-01 9 100076724 100076724 T C CCDC180 Missense_Mutation p.L214P 0.27 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EI-01 9 125616094 125616094 C T RC3H2 Intron 0.14 TCGA-VS-A8EI-01 9 130094607 130094607 G A GARNL3 Missense_Mutation p.D217N 0.15 deleterious(0.01) possibly_damaging(0.907) TCGA-VS-A8EI-01 9 131088055 131088055 C A COQ4 Intron 0.28 TCGA-VS-A8EI-01 9 134312026 134312026 C G PRRC2B Missense_Mutation p.Q105E 0.10 tolerated(0.06) possibly_damaging(0.454) TCGA-VS-A8EI-01 9 135668126 135668126 C T AK8 Missense_Mutation p.R339H 0.23 deleterious(0.03) possibly_damaging(0.858) TCGA-VS-A8EI-01 9 137778359 137778359 G A FCN2 Missense_Mutation p.E215K 0.19 deleterious(0.01) possibly_damaging(0.548) TCGA-VS-A8EI-01 9 21011653 21011653 G A PTPLAD2 Missense_Mutation p.A142V 0.30 tolerated(0.54) benign(0.004) TCGA-VS-A8EI-01 9 86587027 86587027 C A HNRNPK Missense_Mutation p.M241I 0.07 tolerated(0.15) benign(0.006) TCGA-VS-A8EI-01 9 95152201 95152201 G T OGN Missense_Mutation p.L189I 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-VS-A8EI-01 9 990557 990557 C T DMRT3 Missense_Mutation p.S324L 0.12 deleterious_low_confidence(0) benign(0.057) TCGA-VS-A8EI-01 X 122757060 122757060 G A THOC2 Missense_Mutation p.P1193L 0.08 tolerated(0.13) benign(0.035) TCGA-VS-A8EI-01 X 123785873 123785873 C T TENM1 Silent p.S490S 0.22 TCGA-VS-A8EI-01 X 151935939 151935939 G C MAGEA3 Missense_Mutation p.N76K 0.09 tolerated(0.98) benign(0.098) TCGA-VS-A8EI-01 X 155227286 155227286 C G IL9R 5'UTR 0.24 TCGA-VS-A8EI-01 X 48771462 48771462 G A PIM2 Silent p.P294P 0.11 TCGA-VS-A8EI-01 X 53585733 53585733 C G HUWE1 Silent p.L2681L 0.21 TCGA-VS-A8EI-01 X 73044134 73044134 C G XIST RNA 0.12 TCGA-VS-A8EJ-01 10 114577847 114577847 C T VTI1A 3'UTR 0.37 TCGA-VS-A8EJ-01 10 135086357 135086357 C T ADAM8 Missense_Mutation p.G217E 0.21 deleterious(0.02) probably_damaging(0.956) TCGA-VS-A8EJ-01 10 5827975 5827975 A G GDI2 Missense_Mutation p.F143L 0.32 tolerated(0.1) benign(0.354) TCGA-VS-A8EJ-01 11 118889664 118889664 G C TRAPPC4 Missense_Mutation p.Q53H 0.57 deleterious(0.01) possibly_damaging(0.904) TCGA-VS-A8EJ-01 11 120197934 120197934 G A TMEM136 5'UTR 0.50 TCGA-VS-A8EJ-01 11 18429115 18429115 C A LDHA 3'UTR 0.39 TCGA-VS-A8EJ-01 11 46637464 46637464 A G HARBI1 Silent p.T108T 0.12 TCGA-VS-A8EJ-01 11 47437783 47437783 C T SLC39A13 3'UTR 0.25 TCGA-VS-A8EJ-01 11 55703506 55703506 C T OR5I1 Missense_Mutation p.R124H 0.26 deleterious(0.02) benign(0.003) TCGA-VS-A8EJ-01 11 61490974 61490974 A T DAGLA Missense_Mutation p.T160S 0.17 tolerated(0.37) probably_damaging(0.978) TCGA-VS-A8EJ-01 11 63059064 63059064 T G SLC22A10 Missense_Mutation p.L152R 0.38 deleterious(0) possibly_damaging(0.722) TCGA-VS-A8EJ-01 11 63594615 63594615 C G C11orf84 3'UTR 0.07 TCGA-VS-A8EJ-01 11 66188539 66188539 G C NPAS4 5'UTR 0.29 TCGA-VS-A8EJ-01 11 67023162 67023162 G T KDM2A 3'UTR 0.43 TCGA-VS-A8EJ-01 11 73625511 73625511 A G PAAF1 Missense_Mutation p.K261E 0.36 tolerated(0.15) possibly_damaging(0.452) TCGA-VS-A8EJ-01 12 105591636 105591652 CCTCCAGCCACGGCTCC - APPL2 Frame_Shift_Del p.G321Ffs*38 0.47 TCGA-VS-A8EJ-01 12 114384218 114384218 G A RBM19 Silent p.A490A 0.41 TCGA-VS-A8EJ-01 12 11545794 11545794 A C PRB2 Silent p.P406P 0.26 TCGA-VS-A8EJ-01 12 27829358 27829358 C G PPFIBP1 Intron 0.17 TCGA-VS-A8EJ-01 12 33559743 33559743 T C SYT10 Missense_Mutation p.D353G 0.40 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EJ-01 12 40629477 40629477 G T LRRK2 Missense_Mutation p.V133L 0.66 tolerated(0.29) benign(0.001) TCGA-VS-A8EJ-01 12 45269135 45269135 A G NELL2 Silent p.V69V 0.31 TCGA-VS-A8EJ-01 12 52865859 52865859 A T KRT6C Missense_Mutation p.L249H 0.31 deleterious(0.01) possibly_damaging(0.889) TCGA-VS-A8EJ-01 12 54406372 54406372 T A HOXC8 3'UTR 0.25 TCGA-VS-A8EJ-01 12 55422740 55422740 A C NEUROD4 3'UTR 0.31 TCGA-VS-A8EJ-01 12 57861127 57861127 C T GLI1 Silent p.C308C 0.44 TCGA-VS-A8EJ-01 12 62104137 62104137 T G FAM19A2 3'UTR 0.12 TCGA-VS-A8EJ-01 12 78513566 78513566 C T NAV3 Missense_Mutation p.T1197I 0.43 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EJ-01 13 24520508 24520508 G A ANKRD20A19P RNA 0.35 TCGA-VS-A8EJ-01 13 24863146 24863146 C T SPATA13 Nonsense_Mutation p.R893* 0.10 TCGA-VS-A8EJ-01 13 29001446 29001446 T - FLT1 Frame_Shift_Del p.Q429Rfs*24 0.18 TCGA-VS-A8EJ-01 14 101498389 101498389 C A MIR543 RNA 0.23 TCGA-VS-A8EJ-01 14 21930515 21930515 G C RAB2B Missense_Mutation p.H179Q 0.22 tolerated(0.14) benign(0.003) TCGA-VS-A8EJ-01 14 23341340 23341340 C T LRP10 5'UTR 0.19 TCGA-VS-A8EJ-01 14 23623504 23623504 C A SLC7A8 Intron 0.24 TCGA-VS-A8EJ-01 14 24542733 24542743 CCTGTTCCAGC - CPNE6 Frame_Shift_Del p.S67Lfs*8 0.18 TCGA-VS-A8EJ-01 14 38724978 38724978 C A CLEC14A Nonsense_Mutation p.G84* 0.39 TCGA-VS-A8EJ-01 14 53130522 53130522 G A ERO1L Nonsense_Mutation p.Q225* 0.35 TCGA-VS-A8EJ-01 14 79181120 79181120 G T NRXN3 Missense_Mutation p.R188M 0.25 tolerated(0.06) probably_damaging(0.935) TCGA-VS-A8EJ-01 15 23282941 23282941 G A HERC2P2 RNA 0.19 TCGA-VS-A8EJ-01 15 23283013 23283013 C G HERC2P2 RNA 0.32 TCGA-VS-A8EJ-01 15 41062795 41062795 C G C15orf62 Missense_Mutation p.S34R 0.56 deleterious(0.03) probably_damaging(0.943) TCGA-VS-A8EJ-01 15 48495069 48495069 G T CTXN2 3'UTR 0.40 TCGA-VS-A8EJ-01 16 31390892 31390892 C T ITGAX Silent p.H931H 0.61 TCGA-VS-A8EJ-01 16 46741626 46741629 GTTG - MYLK3 Frame_Shift_Del p.P816Lfs*17 0.44 TCGA-VS-A8EJ-01 16 4850546 4850546 G A ROGDI Silent p.L97L 0.39 TCGA-VS-A8EJ-01 16 57787900 57787900 A G KATNB1 Silent p.P407P 0.39 TCGA-VS-A8EJ-01 16 67289815 67289815 C T SLC9A5 Missense_Mutation p.S298L 0.36 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EJ-01 16 72144868 72144868 G A DHX38 Missense_Mutation p.R1164Q 0.34 tolerated(0.45) benign(0.002) TCGA-VS-A8EJ-01 16 74678606 74678606 G A RFWD3 Silent p.L274L 0.56 TCGA-VS-A8EJ-01 17 16338249 16338249 G T TRPV2 Silent p.T720T 0.27 TCGA-VS-A8EJ-01 17 27613588 27613588 G C NUFIP2 Missense_Mutation p.P475R 0.27 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EJ-01 17 27909149 27909149 C T GIT1 Missense_Mutation p.S140N 0.23 deleterious(0) probably_damaging(0.996) TCGA-VS-A8EJ-01 17 37646818 37646818 A G CDK12 Missense_Mutation p.E647G 0.50 probably_damaging(0.933) TCGA-VS-A8EJ-01 17 38933227 38933227 C T KRT27 3'UTR 0.11 TCGA-VS-A8EJ-01 17 39036116 39036116 C T KRT20 Silent p.L289L 0.25 TCGA-VS-A8EJ-01 17 39567633 39567633 G T AC003958.2 RNA 0.22 TCGA-VS-A8EJ-01 17 42427618 42427618 C A GRN Silent p.I124I 0.28 TCGA-VS-A8EJ-01 17 43912609 43912609 G A CRHR1 3'UTR 0.23 TCGA-VS-A8EJ-01 17 44127996 44127996 G C KANSL1 Missense_Mutation p.I641M 0.34 tolerated(0.08) benign(0.104) TCGA-VS-A8EJ-01 17 48551896 48551896 C T ACSF2 Nonsense_Mutation p.R611* 0.18 TCGA-VS-A8EJ-01 17 5078161 5078161 G A USP6 3'UTR 0.48 TCGA-VS-A8EJ-01 17 73843599 73843599 G A WBP2 Silent p.V208V 0.25 TCGA-VS-A8EJ-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.94 TCGA-VS-A8EJ-01 17 76498558 76498558 G A DNAH17-AS1 3'UTR 0.44 TCGA-VS-A8EJ-01 17 79914571 79914571 C G NOTUM Missense_Mutation p.E315Q 0.17 tolerated(0.15) probably_damaging(0.983) TCGA-VS-A8EJ-01 17 80012452 80012452 C G GPS1 Silent p.A165A 0.89 TCGA-VS-A8EJ-01 17 80721848 80721848 G A TBCD Missense_Mutation p.M81I 0.63 tolerated(0.45) benign(0.175) TCGA-VS-A8EJ-01 18 12308748 12308748 G C TUBB6 Silent p.S40S 0.37 TCGA-VS-A8EJ-01 18 12535561 12535561 T A SPIRE1 Missense_Mutation p.N215Y 0.29 deleterious(0.03) possibly_damaging(0.782) TCGA-VS-A8EJ-01 18 22805009 22805009 T A ZNF521 Missense_Mutation p.H958L 0.14 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EJ-01 19 10367426 10367426 G A MRPL4 Missense_Mutation p.G124S 0.28 deleterious(0.03) probably_damaging(0.985) TCGA-VS-A8EJ-01 19 15166342 15166342 G A CASP14 Missense_Mutation p.E208K 0.41 tolerated(0.22) probably_damaging(0.978) TCGA-VS-A8EJ-01 19 15367924 15367924 C T BRD4 Missense_Mutation p.V468M 0.11 possibly_damaging(0.623) TCGA-VS-A8EJ-01 19 34718990 34718990 A G LSM14A 3'UTR 0.22 TCGA-VS-A8EJ-01 19 46404859 46404859 C G MYPOP Missense_Mutation p.G58A 0.62 deleterious(0.02) possibly_damaging(0.785) TCGA-VS-A8EJ-01 19 50338860 50338860 C T MED25 Silent p.L582L 0.47 TCGA-VS-A8EJ-01 19 51650046 51650046 G T SIGLEC7 Missense_Mutation p.A355S 0.44 deleterious(0.03) benign(0.342) TCGA-VS-A8EJ-01 19 51650047 51650047 C T SIGLEC7 Missense_Mutation p.A355V 0.44 tolerated(0.14) benign(0.027) TCGA-VS-A8EJ-01 19 58926999 58926999 G A ZNF584 Missense_Mutation p.R93K 0.49 tolerated(0.97) benign(0) TCGA-VS-A8EJ-01 1 115261365 115261365 C T CSDE1 Missense_Mutation p.E786K 0.39 tolerated(0.09) benign(0.019) TCGA-VS-A8EJ-01 1 155294478 155294478 C G RUSC1 Intron 0.27 TCGA-VS-A8EJ-01 1 158066760 158066760 C T KIRREL 3'Flank 0.27 TCGA-VS-A8EJ-01 1 158913759 158913759 T A PYHIN1 Missense_Mutation p.S394R 0.27 deleterious(0) probably_damaging(0.995) TCGA-VS-A8EJ-01 1 171890912 171890912 C T DNM3 Silent p.G62G 0.13 TCGA-VS-A8EJ-01 1 19488391 19488391 C G UBR4 Missense_Mutation p.D1653H 0.67 probably_damaging(0.998) TCGA-VS-A8EJ-01 1 198723398 198723398 G A PTPRC Silent p.R1170R 0.69 TCGA-VS-A8EJ-01 1 201798353 201798353 G T IPO9 Missense_Mutation p.A6S 0.32 tolerated_low_confidence(0.76) unknown(0) TCGA-VS-A8EJ-01 1 202270348 202270348 C T LGR6 Missense_Mutation p.P305L 0.21 deleterious(0) possibly_damaging(0.69) TCGA-VS-A8EJ-01 1 215812529 215812529 G T USH2A Missense_Mutation p.P5007Q 0.49 probably_damaging(1) TCGA-VS-A8EJ-01 1 218509770 218509770 T A RRP15 3'UTR 0.15 TCGA-VS-A8EJ-01 1 240638358 240638358 G A FMN2 3'UTR 0.20 TCGA-VS-A8EJ-01 1 2540830 2540830 G T MMEL1 Missense_Mutation p.D161E 0.43 tolerated(0.22) benign(0.051) TCGA-VS-A8EJ-01 1 27684264 27684264 C G MAP3K6 Missense_Mutation p.V1007L 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-VS-A8EJ-01 1 34076806 34076806 C T CSMD2 Missense_Mutation p.D2020N 0.43 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EJ-01 1 35447552 35447552 C T ZMYM6NB Nonsense_Mutation p.W153* 0.38 TCGA-VS-A8EJ-01 1 41107532 41107532 G T RIMS3 Missense_Mutation p.S22R 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VS-A8EJ-01 1 45116919 45116919 G A RNF220 3'UTR 0.28 TCGA-VS-A8EJ-01 1 6646806 6646806 C T ZBTB48 Missense_Mutation p.R366W 0.86 deleterious(0) probably_damaging(1) TCGA-VS-A8EJ-01 1 67724599 67724599 T A IL23R Missense_Mutation p.S560T 0.17 tolerated(0.13) benign(0.004) TCGA-VS-A8EJ-01 1 74663918 74663941 GGGCGCATGCGTGCTGTGCGGCGC - FPGT 5'UTR 0.15 TCGA-VS-A8EJ-01 1 94485257 94485257 C T ABCA4 Missense_Mutation p.V1693I 0.14 tolerated(0.65) benign(0.012) TCGA-VS-A8EJ-01 1 94655495 94655495 C G ARHGAP29 Missense_Mutation p.E476Q 0.14 tolerated(0.32) possibly_damaging(0.701) TCGA-VS-A8EJ-01 20 1221045 1221045 G T RAD21L1 Nonsense_Mutation p.E275* 0.32 TCGA-VS-A8EJ-01 20 24995848 24995848 C T ACSS1 Missense_Mutation p.C422Y 0.16 tolerated(0.13) benign(0) TCGA-VS-A8EJ-01 20 30922067 30922067 C T KIF3B 3'UTR 0.29 TCGA-VS-A8EJ-01 20 33096265 33096265 G C ITCH 3'Flank 0.18 TCGA-VS-A8EJ-01 20 36766653 36766653 C G TGM2 Missense_Mutation p.A493P 0.24 deleterious(0.03) possibly_damaging(0.891) TCGA-VS-A8EJ-01 20 42089635 42089635 A C SRSF6 Missense_Mutation p.T323P 0.09 tolerated_low_confidence(0.06) unknown(0) TCGA-VS-A8EJ-01 20 54573270 54573270 G T CBLN4 3'UTR 0.25 TCGA-VS-A8EJ-01 21 34022596 34022596 C T SYNJ1 Missense_Mutation p.E1018K 0.11 tolerated(0.16) benign(0.106) TCGA-VS-A8EJ-01 21 43833583 43833584 GA T UBASH3A Frame_Shift_Del p.S207Afs*3 0.24 TCGA-VS-A8EJ-01 21 43938558 43938558 G C SLC37A1 5'UTR 0.34 TCGA-VS-A8EJ-01 21 45158582 45158582 A G PDXK Intron 0.21 TCGA-VS-A8EJ-01 22 32614681 32614681 C G SLC5A4 Missense_Mutation p.K600N 0.17 tolerated(0.17) benign(0.341) TCGA-VS-A8EJ-01 22 41564765 41564765 C T EP300 Nonsense_Mutation p.R1356* 0.61 TCGA-VS-A8EJ-01 22 42539416 42539416 G A NDUFA6-AS1 3'Flank 1.00 TCGA-VS-A8EJ-01 22 46067827 46067827 G C ATXN10 5'UTR 0.36 TCGA-VS-A8EJ-01 2 10104114 10104114 C T GRHL1 Silent p.I282I 0.20 TCGA-VS-A8EJ-01 2 128366420 128366420 G C MYO7B Silent p.G927G 0.32 TCGA-VS-A8EJ-01 2 128699243 128699243 C A SAP130 3'UTR 0.16 TCGA-VS-A8EJ-01 2 165657058 165657058 C G COBLL1 Intron 0.45 TCGA-VS-A8EJ-01 2 168994651 168994651 G - STK39 Frame_Shift_Del p.K308Sfs*25 0.17 TCGA-VS-A8EJ-01 2 189873850 189873850 T C COL3A1 Silent p.N1242N 0.08 TCGA-VS-A8EJ-01 2 203847063 203847063 A T CARF Missense_Mutation p.D653V 0.48 deleterious_low_confidence(0.01) benign(0.35) TCGA-VS-A8EJ-01 2 204255800 204255800 T A ABI2 Missense_Mutation p.L165Q 0.53 deleterious(0.01) possibly_damaging(0.897) TCGA-VS-A8EJ-01 2 228855724 228855724 T A SPHKAP Missense_Mutation p.I1651F 0.38 deleterious(0.03) possibly_damaging(0.641) TCGA-VS-A8EJ-01 2 36623853 36623853 A T CRIM1 Missense_Mutation p.N143I 0.34 deleterious(0) benign(0.001) TCGA-VS-A8EJ-01 2 56613087 56613087 C A CCDC85A 3'UTR 0.36 TCGA-VS-A8EJ-01 2 58392865 58392865 C T FANCL Missense_Mutation p.A234T 0.47 deleterious(0) probably_damaging(0.918) TCGA-VS-A8EJ-01 2 73315620 73315620 A T RAB11FIP5 Missense_Mutation p.S376T 0.20 tolerated(0.24) benign(0.004) TCGA-VS-A8EJ-01 2 74717786 74717786 G T TTC31 Missense_Mutation p.A156S 0.45 tolerated(0.06) benign(0.316) TCGA-VS-A8EJ-01 3 10328400 10328400 C A GHRL Nonsense_Mutation p.E108* 0.56 TCGA-VS-A8EJ-01 3 122003120 122003120 G T CASR Silent p.L783L 0.43 TCGA-VS-A8EJ-01 3 126178547 126178547 C A ZXDC Missense_Mutation p.A721S 0.37 tolerated(0.07) benign(0.259) TCGA-VS-A8EJ-01 3 12857378 12857378 G T CAND2 Missense_Mutation p.V438F 0.21 deleterious(0) benign(0.104) TCGA-VS-A8EJ-01 3 149040193 149040193 C G TM4SF18 Missense_Mutation p.Q147H 0.19 deleterious(0.04) possibly_damaging(0.633) TCGA-VS-A8EJ-01 3 151475116 151475116 G C AADACL2 Missense_Mutation p.D314H 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-VS-A8EJ-01 3 164785220 164785220 A T SI Silent p.T181T 0.12 TCGA-VS-A8EJ-01 3 169814934 169814934 T A PHC3 3'UTR 0.06 TCGA-VS-A8EJ-01 3 170732374 170732374 C G SLC2A2 Missense_Mutation p.E85D 0.32 tolerated(0.25) benign(0.02) TCGA-VS-A8EJ-01 3 175298987 175298987 T G NAALADL2 Intron 0.39 TCGA-VS-A8EJ-01 3 183677593 183677593 G A ABCC5 Nonsense_Mutation p.Q804* 0.49 TCGA-VS-A8EJ-01 3 197640812 197640812 C G IQCG Missense_Mutation p.Q276H 0.22 deleterious(0.03) probably_damaging(0.984) TCGA-VS-A8EJ-01 3 30827859 30827859 C G GADL1 Missense_Mutation p.K430N 0.23 deleterious(0.01) benign(0.148) TCGA-VS-A8EJ-01 3 36898546 36898546 G A TRANK1 Silent p.F845F 0.38 TCGA-VS-A8EJ-01 3 44929249 44929249 A T TGM4 Missense_Mutation p.N88Y 0.18 tolerated(0.08) benign(0.189) TCGA-VS-A8EJ-01 4 15606873 15606873 T C FBXL5 3'UTR 0.08 TCGA-VS-A8EJ-01 4 156841329 156841329 G A TDO2 3'UTR 0.36 TCGA-VS-A8EJ-01 4 169849203 169849203 G C PALLD 3'Flank 0.10 TCGA-VS-A8EJ-01 4 175577914 175577914 A T GLRA3 Missense_Mutation p.F366I 0.80 tolerated(0.42) benign(0.001) TCGA-VS-A8EJ-01 4 175604032 175604032 C T GLRA3 Silent p.V211V 0.25 TCGA-VS-A8EJ-01 4 184210688 184210688 A C WWC2 Missense_Mutation p.Q1095P 0.83 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EJ-01 4 186544853 186544853 G A SORBS2 Missense_Mutation p.S673F 0.33 deleterious(0.01) possibly_damaging(0.807) TCGA-VS-A8EJ-01 4 2073714 2073714 G T POLN 3'UTR 0.33 TCGA-VS-A8EJ-01 4 55136864 55136864 G A PDGFRA Missense_Mutation p.A396T 0.08 tolerated(0.05) benign(0.079) TCGA-VS-A8EJ-01 4 90034496 90034496 G A TIGD2 Missense_Mutation p.G124D 0.38 deleterious(0) probably_damaging(1) TCGA-VS-A8EJ-01 5 126206134 126206134 C T MARCH3 3'UTR 0.48 TCGA-VS-A8EJ-01 5 136957021 136957021 C A KLHL3 3'UTR 0.33 TCGA-VS-A8EJ-01 5 153085402 153085402 A T GRIA1 Missense_Mutation p.D543V 0.49 deleterious(0) probably_damaging(0.969) TCGA-VS-A8EJ-01 5 160049505 160049535 CAGGTCTGCTGTCTGACAAGGTCTCCAACCA - ATP10B Frame_Shift_Del p.W560Pfs*18 0.45 TCGA-VS-A8EJ-01 5 175309609 175309609 C T CPLX2 3'UTR 0.22 TCGA-VS-A8EJ-01 5 175954879 175954879 C T RNF44 3'UTR 0.21 TCGA-VS-A8EJ-01 5 176794496 176794496 G C RGS14 Missense_Mutation p.E189Q 0.17 tolerated(0.26) benign(0.077) TCGA-VS-A8EJ-01 5 176824020 176824020 C T SLC34A1 Missense_Mutation p.T454M 0.37 deleterious(0) probably_damaging(0.996) TCGA-VS-A8EJ-01 5 32791776 32791776 G C NPR3 3'UTR 0.15 TCGA-VS-A8EJ-01 5 38938158 38938174 GAGCAAAACCATTTGGG - RICTOR 3'UTR 0.11 TCGA-VS-A8EJ-01 5 43644775 43644775 A G NNT Silent p.L387L 0.14 TCGA-VS-A8EJ-01 5 45267206 45267206 G T HCN1 Silent p.R590R 0.23 TCGA-VS-A8EJ-01 5 52781003 52781003 G T FST Missense_Mutation p.A300S 0.23 tolerated(0.56) possibly_damaging(0.851) TCGA-VS-A8EJ-01 6 108676941 108676941 A G LACE1 Missense_Mutation p.M167V 0.51 deleterious(0) probably_damaging(0.994) TCGA-VS-A8EJ-01 6 147085206 147085206 T C ADGB Silent p.T1240T 0.42 TCGA-VS-A8EJ-01 6 152552608 152552608 C T SYNE1 Missense_Mutation p.R6986H 0.48 probably_damaging(0.986) TCGA-VS-A8EJ-01 6 155154074 155154084 GGTAGATTTCG TA SCAF8 Nonsense_Mutation p.G1121_R1124delins* 0.53 TCGA-VS-A8EJ-01 6 159672356 159672356 T G FNDC1 Missense_Mutation p.N1619K 0.45 tolerated(0.1) possibly_damaging(0.684) TCGA-VS-A8EJ-01 6 160210564 160210564 C T TCP1 5'UTR 0.49 TCGA-VS-A8EJ-01 6 16300816 16300816 A T ATXN1 3'UTR 0.37 TCGA-VS-A8EJ-01 6 29625006 29625006 C G MOG Missense_Mutation p.P7R 0.31 tolerated(0.07) unknown(0) TCGA-VS-A8EJ-01 6 31600556 31600556 C T PRRC2A Missense_Mutation p.S1369F 0.59 unknown(0) TCGA-VS-A8EJ-01 6 31833652 31833652 G C SLC44A4 Silent p.L495L 0.12 TCGA-VS-A8EJ-01 6 31855683 31855683 C T EHMT2 Missense_Mutation p.D601N 0.47 tolerated(0.18) benign(0.212) TCGA-VS-A8EJ-01 6 31938424 31938424 G A DXO Silent p.S257S 0.50 TCGA-VS-A8EJ-01 6 53370259 53370259 C A GCLC Silent p.V442V 0.09 TCGA-VS-A8EJ-01 6 55039260 55039260 G A HCRTR2 5'UTR 0.29 TCGA-VS-A8EJ-01 6 65301131 65301131 T C EYS Silent p.S1543S 0.40 TCGA-VS-A8EJ-01 6 84903330 84903330 A C KIAA1009 Missense_Mutation p.V369G 0.44 tolerated(0.06) benign(0.299) TCGA-VS-A8EJ-01 7 100159923 100159923 C T AGFG2 Missense_Mutation p.P307S 0.45 tolerated(0.16) benign(0.027) TCGA-VS-A8EJ-01 7 100487849 100487849 A T ACHE 3'UTR 0.32 TCGA-VS-A8EJ-01 7 108155684 108155684 C G PNPLA8 Missense_Mutation p.L84F 0.38 tolerated_low_confidence(0.14) benign(0.033) TCGA-VS-A8EJ-01 7 12271546 12271553 CAACTTAT - TMEM106B Frame_Shift_Del p.T258Vfs*5 0.31 TCGA-VS-A8EJ-01 7 129350318 129350318 G C NRF1 Missense_Mutation p.Q290H 0.27 deleterious(0.04) benign(0.078) TCGA-VS-A8EJ-01 7 148876216 148876216 C T ZNF398 Missense_Mutation p.R418W 0.17 deleterious(0) probably_damaging(1) TCGA-VS-A8EJ-01 7 25266503 25266503 C A NPVF Missense_Mutation p.R94M 0.63 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EJ-01 7 99751132 99751132 G A LAMTOR4 Missense_Mutation p.R65H 0.31 tolerated(0.06) benign(0.286) TCGA-VS-A8EJ-01 8 144800397 144800397 C G MAPK15 Missense_Mutation p.P71A 0.51 deleterious(0.04) probably_damaging(1) TCGA-VS-A8EJ-01 8 17063243 17063243 A C ZDHHC2 Missense_Mutation p.I186L 0.11 deleterious(0) possibly_damaging(0.577) TCGA-VS-A8EJ-01 8 22464165 22464165 C A CCAR2 Missense_Mutation p.H66N 0.82 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A8EJ-01 8 22464166 22464166 A T CCAR2 Missense_Mutation p.H66L 0.82 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A8EJ-01 8 57358373 57358373 A C PENK Splice_Site p.X46_splice 0.25 TCGA-VS-A8EJ-01 8 77765162 77765162 C T ZFHX4 Missense_Mutation p.T2002M 0.23 possibly_damaging(0.897) TCGA-VS-A8EJ-01 9 125281717 125281717 C G OR1J4 Missense_Mutation p.Q100E 0.71 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VS-A8EJ-01 9 131019783 131019783 C T GOLGA2 Missense_Mutation p.E887K 0.41 tolerated(0.08) benign(0.059) TCGA-VS-A8EJ-01 9 135798806 135798806 G T TSC1 Missense_Mutation p.S146Y 0.43 deleterious(0) possibly_damaging(0.905) TCGA-VS-A8EJ-01 9 138376529 138376529 G C PPP1R26 Missense_Mutation p.G58A 0.38 tolerated(0.57) benign(0.072) TCGA-VS-A8EJ-01 9 34256810 34256810 C G KIF24 Missense_Mutation p.R932T 0.44 tolerated(0.08) benign(0.15) TCGA-VS-A8EJ-01 9 35618267 35618267 A T CD72 Missense_Mutation p.F12I 0.16 deleterious(0) probably_damaging(1) TCGA-VS-A8EJ-01 9 35689919 35689919 G C TPM2 5'UTR 0.46 TCGA-VS-A8EJ-01 9 38397358 38397358 T A ALDH1B1 3'UTR 0.27 TCGA-VS-A8EJ-01 9 84548109 84548109 T A RP11-383M4.6 Intron 0.58 TCGA-VS-A8EJ-01 X 24231957 24231957 G A ZFX 3'UTR 0.64 TCGA-VS-A8EJ-01 X 34962832 34962837 AGTGCA - FAM47B In_Frame_Del p.Q630_V631del 0.57 TCGA-VS-A8EJ-01 X 47498384 47498384 C A ELK1 Silent p.G188G 0.22 TCGA-VS-A8EJ-01 X 49099409 49099409 T A CCDC22 Missense_Mutation p.L140Q 0.21 deleterious(0.04) possibly_damaging(0.467) TCGA-VS-A8EJ-01 X 54839418 54839418 C A MAGED2 Missense_Mutation p.L376I 0.36 deleterious(0) possibly_damaging(0.902) TCGA-VS-A8EJ-01 X 69647070 69647070 G C GDPD2 Splice_Site p.X262_splice 0.83 TCGA-VS-A8EJ-01 X 9684483 9684483 G A TBL1X 3'UTR 0.33 TCGA-VS-A8EK-01 10 102035022 102035022 C G BLOC1S2 3'UTR 0.35 TCGA-VS-A8EK-01 10 103991526 103991526 G A PITX3 Missense_Mutation p.S47L 0.42 deleterious(0.04) benign(0.001) TCGA-VS-A8EK-01 10 126308711 126308711 G A FAM53B 3'UTR 0.32 TCGA-VS-A8EK-01 10 126311320 126311320 G A FAM53B 3'UTR 0.29 TCGA-VS-A8EK-01 10 129845737 129845737 G C PTPRE Missense_Mutation p.A65P 0.08 deleterious(0.02) benign(0.228) TCGA-VS-A8EK-01 10 129911732 129911732 G C MKI67 Missense_Mutation p.L539V 0.37 deleterious(0) probably_damaging(0.994) TCGA-VS-A8EK-01 10 13708313 13708313 C T FRMD4A Missense_Mutation p.E463K 0.35 tolerated(0.17) benign(0.418) TCGA-VS-A8EK-01 10 16975146 16975146 G C CUBN Missense_Mutation p.L2022V 0.71 deleterious(0.01) probably_damaging(0.98) TCGA-VS-A8EK-01 10 18948592 18948592 G A ARL5B Nonsense_Mutation p.W9* 0.34 TCGA-VS-A8EK-01 10 21071995 21071995 C T NEBL 3'UTR 0.33 TCGA-VS-A8EK-01 10 27048038 27048038 G A ABI1 Missense_Mutation p.S344F 0.30 tolerated(0.13) possibly_damaging(0.498) TCGA-VS-A8EK-01 10 34558790 34558790 C G PARD3 Missense_Mutation p.A1075P 0.05 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EK-01 10 46969274 46969274 G A SYT15 Missense_Mutation p.P63S 0.20 tolerated(0.25) benign(0.012) TCGA-VS-A8EK-01 10 74914149 74914156 GCCAGCTG - ECD Frame_Shift_Del p.P214Hfs*26 0.37 TCGA-VS-A8EK-01 10 75301267 75301267 C G USP54 Missense_Mutation p.E231Q 0.51 tolerated(0.38) probably_damaging(0.985) TCGA-VS-A8EK-01 10 81205183 81205183 G A ZCCHC24 Missense_Mutation p.S5L 0.40 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-VS-A8EK-01 10 97752383 97752383 C T ENTPD1-AS1 Intron 0.06 TCGA-VS-A8EK-01 10 98764487 98764487 A G SLIT1 Missense_Mutation p.Y1225H 0.40 deleterious(0) possibly_damaging(0.87) TCGA-VS-A8EK-01 10 98764489 98764489 C G SLIT1 Missense_Mutation p.S1224T 0.38 tolerated(0.28) probably_damaging(0.969) TCGA-VS-A8EK-01 10 98764496 98764496 G A SLIT1 Missense_Mutation p.R1222C 0.39 deleterious(0) probably_damaging(0.939) TCGA-VS-A8EK-01 10 99330068 99330068 G C UBTD1 Missense_Mutation p.G158R 0.39 deleterious(0.01) probably_damaging(1) TCGA-VS-A8EK-01 11 122830017 122830017 C G C11orf63 Nonsense_Mutation p.S734* 0.45 TCGA-VS-A8EK-01 11 125765449 125765449 T C PUS3 Missense_Mutation p.D205G 0.47 deleterious(0.01) possibly_damaging(0.741) TCGA-VS-A8EK-01 11 247380 247380 G A PSMD13 Missense_Mutation p.G169E 0.49 deleterious(0) probably_damaging(0.991) TCGA-VS-A8EK-01 11 51411709 51411709 C G OR4A5 Missense_Mutation p.K229N 0.38 deleterious_low_confidence(0) benign(0.01) TCGA-VS-A8EK-01 11 56310346 56310346 G A OR5M11 Missense_Mutation p.R130C 0.26 deleterious(0.04) benign(0.003) TCGA-VS-A8EK-01 11 60535118 60535118 G A MS4A15 Missense_Mutation p.G113E 0.07 deleterious(0.04) probably_damaging(1) TCGA-VS-A8EK-01 11 60535120 60535120 G A MS4A15 Missense_Mutation p.G114R 0.07 deleterious(0) probably_damaging(0.986) TCGA-VS-A8EK-01 11 64504318 64504318 C T RASGRP2 Missense_Mutation p.M334I 0.35 deleterious(0.01) benign(0.411) TCGA-VS-A8EK-01 11 6741590 6741590 C T GVINP1 RNA 0.33 TCGA-VS-A8EK-01 11 76826588 76826588 C T CAPN5 Missense_Mutation p.R283C 0.26 deleterious(0) probably_damaging(1) TCGA-VS-A8EK-01 11 83497707 83497707 C T DLG2 Intron 0.69 TCGA-VS-A8EK-01 12 108169091 108169091 G T ASCL4 Silent p.R33R 0.50 TCGA-VS-A8EK-01 12 109717422 109717422 C G FOXN4 3'UTR 0.25 TCGA-VS-A8EK-01 12 112628692 112628692 C G HECTD4 Missense_Mutation p.E2978Q 0.17 probably_damaging(0.974) TCGA-VS-A8EK-01 12 113344827 113344827 C G OAS1 5'UTR 0.44 TCGA-VS-A8EK-01 12 117728188 117728188 G A NOS1 Missense_Mutation p.P299L 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-VS-A8EK-01 12 121867920 121867920 C A KDM2B 3'UTR 0.55 TCGA-VS-A8EK-01 12 121881587 121881587 G T KDM2B Missense_Mutation p.L821I 0.19 tolerated(0.2) benign(0.01) TCGA-VS-A8EK-01 12 121881588 121881588 C T KDM2B Silent p.S820S 0.19 TCGA-VS-A8EK-01 12 124414993 124414993 C T DNAH10 Silent p.I4101I 0.30 TCGA-VS-A8EK-01 12 20903724 20903724 C T SLCO1C1 Silent p.F638F 0.34 TCGA-VS-A8EK-01 12 23818458 23818458 G A SOX5 Missense_Mutation p.P284L 0.35 deleterious(0.01) benign(0.446) TCGA-VS-A8EK-01 12 40748235 40748235 C A LRRK2 Silent p.T2237T 0.09 TCGA-VS-A8EK-01 12 48737371 48737371 T C ZNF641 Silent p.R234R 0.31 TCGA-VS-A8EK-01 12 48920016 48920016 G A OR8S1 Missense_Mutation p.C201Y 0.44 deleterious(0.04) benign(0.111) TCGA-VS-A8EK-01 12 49441780 49441780 G A KMT2D Nonsense_Mutation p.Q1402* 0.33 TCGA-VS-A8EK-01 12 49582856 49582856 G A TUBA1A 5'UTR 0.37 TCGA-VS-A8EK-01 12 52390104 52390104 G A ACVR1B 3'Flank 0.25 TCGA-VS-A8EK-01 12 6058234 6058234 C T VWF Missense_Mutation p.E2797K 0.25 tolerated(0.29) possibly_damaging(0.636) TCGA-VS-A8EK-01 12 6127787 6127787 C T VWF Silent p.Q1599Q 0.11 TCGA-VS-A8EK-01 12 93793142 93793142 C G NUDT4 Missense_Mutation p.S178C 0.09 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-VS-A8EK-01 12 96051584 96051584 C G NTN4 3'UTR 0.46 TCGA-VS-A8EK-01 13 23907994 23907994 C G SACS Missense_Mutation p.D3341H 0.40 probably_damaging(0.998) TCGA-VS-A8EK-01 13 27256766 27256766 G A WASF3 Missense_Mutation p.E336K 0.42 tolerated(0.2) benign(0.146) TCGA-VS-A8EK-01 13 28592607 28592607 G T FLT3 Silent p.G846G 0.58 TCGA-VS-A8EK-01 13 75887018 75887018 T C TBC1D4 Missense_Mutation p.K747E 0.19 deleterious(0.03) possibly_damaging(0.818) TCGA-VS-A8EK-01 14 23790501 23790501 G T PABPN1 5'UTR 0.34 TCGA-VS-A8EK-01 14 24707984 24707984 G T GMPR2 Nonstop_Mutation p.*367Yext*2 0.35 TCGA-VS-A8EK-01 14 31091601 31091601 G C SCFD1 Missense_Mutation p.Q19H 0.28 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EK-01 14 39716223 39716223 G T MIA2 Missense_Mutation p.D149Y 0.28 deleterious(0) probably_damaging(0.971) TCGA-VS-A8EK-01 14 61442787 61442787 G A TRMT5 Missense_Mutation p.R284C 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A8EK-01 14 64519113 64519113 C T SYNE2 Nonsense_Mutation p.Q2828* 0.33 TCGA-VS-A8EK-01 14 90783132 90783132 G A NRDE2 Missense_Mutation p.S66L 0.20 tolerated(0.12) benign(0.107) TCGA-VS-A8EK-01 14 91773493 91773493 C T CCDC88C Silent p.A1028A 0.33 TCGA-VS-A8EK-01 14 99864168 99864168 G T SETD3 3'UTR 0.17 TCGA-VS-A8EK-01 14 99879303 99879303 G C SETD3 Missense_Mutation p.N278K 0.09 deleterious(0) possibly_damaging(0.877) TCGA-VS-A8EK-01 15 26791375 26791375 C A GABRB3 3'UTR 0.61 TCGA-VS-A8EK-01 15 28388084 28388084 A C HERC2 Missense_Mutation p.S3811R 0.16 possibly_damaging(0.854) TCGA-VS-A8EK-01 15 41195038 41195038 C T VPS18 Silent p.S807S 0.69 TCGA-VS-A8EK-01 15 43815735 43815742 CTTGAAGG - MAP1A Frame_Shift_Del p.L689Nfs*21 0.60 TCGA-VS-A8EK-01 15 45491226 45491226 C A SHF Missense_Mutation p.G16V 0.51 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-VS-A8EK-01 15 64263708 64263708 C T DAPK2 Missense_Mutation p.E123K 0.64 deleterious(0.01) probably_damaging(0.992) TCGA-VS-A8EK-01 15 71953019 71953019 G A THSD4 Missense_Mutation p.E435K 0.33 tolerated(0.41) benign(0.005) TCGA-VS-A8EK-01 15 87531240 87531240 C T AGBL1 Missense_Mutation p.P1036S 0.08 tolerated_low_confidence(0.35) possibly_damaging(0.641) TCGA-VS-A8EK-01 15 90193028 90193028 T A KIF7 Missense_Mutation p.E158V 0.73 deleterious(0) probably_damaging(0.95) TCGA-VS-A8EK-01 15 91419749 91419749 G C FURIN Missense_Mutation p.E112Q 0.30 tolerated(0.58) benign(0.002) TCGA-VS-A8EK-01 15 99669959 99669959 C G SYNM Missense_Mutation p.S464C 0.44 deleterious(0.01) possibly_damaging(0.853) TCGA-VS-A8EK-01 16 1364344 1364344 G A UBE2I Missense_Mutation p.M39I 0.24 deleterious(0.01) benign(0.123) TCGA-VS-A8EK-01 16 31073028 31073028 C G ZNF668 Silent p.L430L 0.31 TCGA-VS-A8EK-01 16 31473945 31473945 C T ARMC5 Silent p.A359A 0.30 TCGA-VS-A8EK-01 16 32892576 32892576 C T RP11-989E6.3 5'Flank 0.14 TCGA-VS-A8EK-01 16 4641776 4641776 G T C16orf96 Missense_Mutation p.G901V 0.35 deleterious(0) probably_damaging(0.979) TCGA-VS-A8EK-01 16 4641777 4641777 C G C16orf96 Silent p.G901G 0.35 TCGA-VS-A8EK-01 16 46731492 46731492 G C ORC6 Missense_Mutation p.E252Q 0.26 deleterious_low_confidence(0.04) benign(0.031) TCGA-VS-A8EK-01 16 49411652 49411652 C T C16orf78 Missense_Mutation p.P54L 0.20 tolerated(0.31) benign(0.201) TCGA-VS-A8EK-01 16 56436901 56436901 C A AMFR Missense_Mutation p.A324S 0.07 tolerated(0.11) benign(0.004) TCGA-VS-A8EK-01 16 57732033 57732033 G A CCDC135 Missense_Mutation p.E58K 0.37 tolerated(0.67) benign(0.041) TCGA-VS-A8EK-01 16 58554639 58554639 C G CNOT1 3'UTR 0.30 TCGA-VS-A8EK-01 16 68293674 68293674 C A PLA2G15 3'UTR 0.69 TCGA-VS-A8EK-01 16 71679593 71679593 C G PHLPP2 3'UTR 0.25 TCGA-VS-A8EK-01 16 71764431 71764431 G A AP1G1 3'Flank 0.35 TCGA-VS-A8EK-01 16 72020310 72020310 G T PKD1L3 RNA 0.20 TCGA-VS-A8EK-01 16 72020322 72020322 G C PKD1L3 RNA 0.20 TCGA-VS-A8EK-01 16 79246059 79246059 C A WWOX 3'UTR 0.14 TCGA-VS-A8EK-01 17 10541169 10541169 C T MYH3 Silent p.L1271L 0.43 TCGA-VS-A8EK-01 17 1375450 1375450 G A MYO1C Missense_Mutation p.R624C 0.44 deleterious(0.01) benign(0.212) TCGA-VS-A8EK-01 17 21910985 21910985 G T RP11-744K17.9 RNA 0.53 TCGA-VS-A8EK-01 17 27086865 27086865 G C FAM222B Missense_Mutation p.H38D 0.50 tolerated(0.44) benign(0.034) TCGA-VS-A8EK-01 17 30692357 30692357 C T ZNF207 Missense_Mutation p.P227S 0.52 tolerated(0.05) benign(0.113) TCGA-VS-A8EK-01 17 34852189 34852189 G C MYO19 Missense_Mutation p.P940R 0.20 tolerated_low_confidence(0.69) benign(0.008) TCGA-VS-A8EK-01 17 39782736 39782736 G C KRT17 5'Flank 0.33 TCGA-VS-A8EK-01 17 40265843 40265843 C T KAT2A Missense_Mutation p.E780K 0.34 tolerated(0.06) probably_damaging(0.946) TCGA-VS-A8EK-01 17 48540875 48540875 C A ACSF2 Missense_Mutation p.F336L 0.39 deleterious(0) probably_damaging(0.968) TCGA-VS-A8EK-01 17 48626418 48626418 C G SPATA20 Silent p.G177G 0.37 TCGA-VS-A8EK-01 17 56642234 56642234 C T TEX14 Missense_Mutation p.E1400K 0.45 deleterious(0) possibly_damaging(0.786) TCGA-VS-A8EK-01 17 59968912 59968912 C T INTS2 Missense_Mutation p.E621K 0.40 deleterious(0) probably_damaging(0.937) TCGA-VS-A8EK-01 17 63554048 63554048 C T AXIN2 Missense_Mutation p.E231K 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A8EK-01 17 76887592 76887592 G A DDC8 Missense_Mutation p.R332W 0.12 deleterious(0.02) benign(0.409) TCGA-VS-A8EK-01 17 77043858 77043858 C G C1QTNF1 Missense_Mutation p.F178L 0.43 deleterious(0.04) probably_damaging(0.967) TCGA-VS-A8EK-01 17 7749214 7749214 C T KDM6B Silent p.P54P 0.65 TCGA-VS-A8EK-01 18 2655972 2655972 G C SMCHD1 5'UTR 0.33 TCGA-VS-A8EK-01 18 32864867 32864867 C A ZSCAN30 Intron 0.16 TCGA-VS-A8EK-01 18 47320729 47320729 C T ACAA2 Silent p.E166E 0.41 TCGA-VS-A8EK-01 18 6239847 6239847 G A L3MBTL4 Nonsense_Mutation p.Q193* 0.37 TCGA-VS-A8EK-01 18 72913660 72913660 G A ZADH2 Missense_Mutation p.S282L 0.30 tolerated(0.22) benign(0.042) TCGA-VS-A8EK-01 19 1042396 1042396 G C ABCA7 Silent p.T166T 0.09 TCGA-VS-A8EK-01 19 11891425 11891425 T G ZNF441 Missense_Mutation p.S262R 0.33 tolerated(0.5) possibly_damaging(0.752) TCGA-VS-A8EK-01 19 12186381 12186381 C A ZNF844 Missense_Mutation p.A149D 0.41 deleterious(0) possibly_damaging(0.908) TCGA-VS-A8EK-01 19 16963918 16963918 C T SIN3B Silent p.I296I 0.42 TCGA-VS-A8EK-01 19 17360921 17360921 C T USHBP1 3'UTR 0.42 TCGA-VS-A8EK-01 19 19245616 19245616 C T TMEM161A Silent p.A28A 0.15 TCGA-VS-A8EK-01 19 2515015 2515015 C T GNG7 3'UTR 0.34 TCGA-VS-A8EK-01 19 35614807 35614807 G C FXYD3 3'Flank 0.22 TCGA-VS-A8EK-01 19 40408065 40408065 G A FCGBP Silent p.L1552L 0.45 TCGA-VS-A8EK-01 19 45768117 45768117 C T MARK4 Silent p.L147L 0.35 TCGA-VS-A8EK-01 19 45901586 45901586 C T PPP1R13L 5'UTR 0.40 TCGA-VS-A8EK-01 19 46973369 46973369 C T PNMAL1 Silent p.A308A 0.36 TCGA-VS-A8EK-01 19 47156042 47156042 C T DACT3 Missense_Mutation p.G125E 0.36 tolerated(0.09) benign(0.324) TCGA-VS-A8EK-01 19 49575298 49575298 G T KCNA7 Missense_Mutation p.A182E 0.43 tolerated(0.75) benign(0.002) TCGA-VS-A8EK-01 19 49979037 49979037 C T FLT3LG Silent p.F41F 0.08 TCGA-VS-A8EK-01 19 51480877 51480877 C T KLK7 Missense_Mutation p.C226Y 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A8EK-01 19 51771834 51771834 G C SIGLECL1 Missense_Mutation p.D193H 0.41 deleterious(0.02) benign(0.083) TCGA-VS-A8EK-01 19 51869620 51869620 C T CLDND2 3'Flank 0.22 TCGA-VS-A8EK-01 19 51883406 51883406 C A LIM2 3'UTR 0.48 TCGA-VS-A8EK-01 19 52725381 52725381 C T PPP2R1A Silent p.I516I 0.07 TCGA-VS-A8EK-01 19 53352463 53352463 G A ZNF468 Silent p.L7L 0.06 TCGA-VS-A8EK-01 19 53418572 53418572 G A ZNF888 RNA 0.11 TCGA-VS-A8EK-01 19 53669576 53669576 G C ZNF665 Missense_Mutation p.T56R 0.11 deleterious(0.04) benign(0.001) TCGA-VS-A8EK-01 19 55263818 55263818 G C KIR2DL3 Splice_Site p.X292_splice 0.24 TCGA-VS-A8EK-01 19 55795399 55795399 G A BRSK1 5'Flank 0.25 TCGA-VS-A8EK-01 19 5641856 5641856 G A SAFB Missense_Mutation p.E149K 0.42 deleterious(0.03) benign(0.216) TCGA-VS-A8EK-01 19 58004683 58004683 A G ZNF419 Missense_Mutation p.H254R 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A8EK-01 19 58027616 58027616 C G ZNF773 3'UTR 0.30 TCGA-VS-A8EK-01 19 59067527 59067527 C G UBE2M Missense_Mutation p.E161Q 0.42 tolerated(0.21) possibly_damaging(0.722) TCGA-VS-A8EK-01 19 6665008 6665008 G A TNFSF14 Missense_Mutation p.R218C 0.29 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EK-01 19 9065816 9065816 T A MUC16 Silent p.S7210S 0.34 TCGA-VS-A8EK-01 19 9921192 9921192 C G FBXL12 3'UTR 0.56 TCGA-VS-A8EK-01 1 110465858 110465858 C T CSF1 Silent p.V205V 0.28 TCGA-VS-A8EK-01 1 110923626 110923626 C T SLC16A4 Silent p.L168L 0.22 TCGA-VS-A8EK-01 1 1139067 1139067 G A TNFRSF18 Silent p.C224C 0.39 TCGA-VS-A8EK-01 1 11917710 11917710 T A NPPB 3'UTR 0.10 TCGA-VS-A8EK-01 1 120165449 120165449 G A ZNF697 Missense_Mutation p.S506F 0.16 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EK-01 1 120254593 120254593 C G PHGDH 5'UTR 0.39 TCGA-VS-A8EK-01 1 12815735 12815735 C G C1orf158 Missense_Mutation p.S66C 0.49 deleterious(0.04) probably_damaging(0.926) TCGA-VS-A8EK-01 1 12837562 12837562 C T PRAMEF12 Silent p.L424L 0.26 TCGA-VS-A8EK-01 1 145528619 145528619 C A ITGA10 Missense_Mutation p.S139Y 0.29 deleterious(0) possibly_damaging(0.905) TCGA-VS-A8EK-01 1 149902498 149902498 A C MTMR11 Intron 0.46 TCGA-VS-A8EK-01 1 151259013 151259013 C T ZNF687 Silent p.V82V 0.56 TCGA-VS-A8EK-01 1 151785433 151785433 G A RORC Silent p.L425L 0.44 TCGA-VS-A8EK-01 1 152283214 152283214 C T FLG Missense_Mutation p.R1383K 0.39 benign(0.22) TCGA-VS-A8EK-01 1 153800517 153800517 C T GATAD2B Missense_Mutation p.E103K 0.29 deleterious(0.02) possibly_damaging(0.77) TCGA-VS-A8EK-01 1 156374395 156374395 T G C1orf61 Splice_Site p.X142_splice 0.48 TCGA-VS-A8EK-01 1 160156138 160156138 C T ATP1A4 Silent p.L1014L 0.29 TCGA-VS-A8EK-01 1 16042729 16042729 C T PLEKHM2 Intron 0.47 TCGA-VS-A8EK-01 1 161059140 161059140 G C PVRL4 5'UTR 0.55 TCGA-VS-A8EK-01 1 166926081 166926081 G A ILDR2 Missense_Mutation p.L130F 0.26 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EK-01 1 16717878 16717879 - A SZRD1 Frame_Shift_Ins p.R21Kfs*31 0.11 TCGA-VS-A8EK-01 1 174417316 174417316 G T GPR52 Nonsense_Mutation p.E23* 0.26 TCGA-VS-A8EK-01 1 180153054 180153054 C A QSOX1 Silent p.L252L 0.26 TCGA-VS-A8EK-01 1 181021589 181021589 C G MR1 Missense_Mutation p.L275V 0.53 tolerated(0.62) benign(0.005) TCGA-VS-A8EK-01 1 19491818 19491818 C - UBR4 Frame_Shift_Del p.A1413Qfs*16 0.14 TCGA-VS-A8EK-01 1 19566460 19566460 C T EMC1 Missense_Mutation p.G269E 0.35 tolerated(0.48) benign(0.001) TCGA-VS-A8EK-01 1 200635439 200635439 C G DDX59 Missense_Mutation p.E144Q 0.53 tolerated(0.44) benign(0.015) TCGA-VS-A8EK-01 1 204197208 204197208 C T PLEKHA6 Intron 0.19 TCGA-VS-A8EK-01 1 2105404 2105404 G A PRKCZ Missense_Mutation p.D452N 0.38 deleterious(0.03) probably_damaging(0.997) TCGA-VS-A8EK-01 1 225380483 225380483 C G DNAH14 Missense_Mutation p.P991R 0.30 tolerated(0.46) possibly_damaging(0.865) TCGA-VS-A8EK-01 1 230457510 230457510 C A PGBD5 3'Flank 0.18 TCGA-VS-A8EK-01 1 2319730 2319730 C T MORN1 Silent p.A65A 0.40 TCGA-VS-A8EK-01 1 233120358 233120358 C G PCNXL2 Intron 0.26 TCGA-VS-A8EK-01 1 236766477 236766477 C T HEATR1 Silent p.L114L 0.34 TCGA-VS-A8EK-01 1 23687658 23687658 T C ZNF436 3'UTR 0.43 TCGA-VS-A8EK-01 1 241912880 241912880 G A WDR64 Silent p.G532G 0.47 TCGA-VS-A8EK-01 1 241912881 241912881 C A WDR64 Missense_Mutation p.Q533K 0.46 deleterious(0.05) benign(0.348) TCGA-VS-A8EK-01 1 243288955 243288955 C T CEP170 3'UTR 0.38 TCGA-VS-A8EK-01 1 248308449 248308449 C T OR2M5 5'Flank 0.22 TCGA-VS-A8EK-01 1 25599083 25599083 C G RHD Silent p.L15L 0.48 TCGA-VS-A8EK-01 1 33476393 33476393 G A AK2 3'Flank 0.36 TCGA-VS-A8EK-01 1 36282485 36282485 C T AGO4 Missense_Mutation p.P8S 0.31 tolerated(0.05) benign(0.001) TCGA-VS-A8EK-01 1 38287932 38287932 A T MTF1 Missense_Mutation p.V543D 0.33 deleterious(0.01) possibly_damaging(0.873) TCGA-VS-A8EK-01 1 42875816 42875816 C T RIMKLA Missense_Mutation p.R215C 0.43 deleterious(0.03) benign(0.329) TCGA-VS-A8EK-01 1 47728657 47728657 G A STIL Missense_Mutation p.S916L 0.27 tolerated(0.05) benign(0.008) TCGA-VS-A8EK-01 1 52283797 52283797 G A NRD1 Silent p.I502I 0.28 TCGA-VS-A8EK-01 1 63300451 63300451 C T ATG4C Silent p.D339D 0.36 TCGA-VS-A8EK-01 1 64089336 64089336 G C PGM1 Missense_Mutation p.D69H 0.17 deleterious(0.01) benign(0.012) TCGA-VS-A8EK-01 1 66062175 66062175 G A LEPR Missense_Mutation p.D250N 0.35 tolerated(0.32) benign(0.002) TCGA-VS-A8EK-01 1 86196223 86196223 G A COL24A1 3'UTR 0.34 TCGA-VS-A8EK-01 1 86196342 86196342 G C COL24A1 Missense_Mutation p.L1678V 0.29 tolerated(0.57) benign(0.306) TCGA-VS-A8EK-01 20 1579499 1579499 T C SIRPB1 Intron 0.28 TCGA-VS-A8EK-01 20 2451387 2451387 C T SNRPB 5'UTR 0.14 TCGA-VS-A8EK-01 20 30556186 30556186 G A XKR7 Missense_Mutation p.D70N 0.40 deleterious(0) probably_damaging(1) TCGA-VS-A8EK-01 20 3673398 3673398 G A SIGLEC1 Missense_Mutation p.P1267L 0.16 deleterious(0) probably_damaging(1) TCGA-VS-A8EK-01 20 48698247 48698247 C T UBE2V1 3'UTR 0.54 TCGA-VS-A8EK-01 20 55033417 55033417 C T CASS4 Nonsense_Mutation p.Q659* 0.34 TCGA-VS-A8EK-01 20 56186959 56186959 G A ZBP1 Missense_Mutation p.S233L 0.39 tolerated(0.24) benign(0.007) TCGA-VS-A8EK-01 20 742333 742333 C G SLC52A3 Intron 0.60 TCGA-VS-A8EK-01 21 30415752 30415752 G A USP16 Silent p.K396K 0.27 TCGA-VS-A8EK-01 21 30415795 30415795 G A USP16 Missense_Mutation p.E411K 0.29 tolerated(0.46) benign(0.093) TCGA-VS-A8EK-01 21 30415843 30415843 G C USP16 Missense_Mutation p.E427Q 0.33 tolerated(0.59) benign(0.371) TCGA-VS-A8EK-01 21 45507691 45507691 C G TRAPPC10 Missense_Mutation p.S884C 0.26 tolerated(1) possibly_damaging(0.447) TCGA-VS-A8EK-01 21 46713344 46713344 G A LINC00205 RNA 0.40 TCGA-VS-A8EK-01 22 17623986 17623986 A C CECR5 Splice_Site p.X191_splice 0.33 TCGA-VS-A8EK-01 22 23101538 23101538 C A IGLV2-14 Silent p.A64A 0.28 TCGA-VS-A8EK-01 22 23655102 23655102 C T BCR Silent p.S1117S 0.40 TCGA-VS-A8EK-01 22 24937064 24937064 G A GUCD1 3'UTR 0.40 TCGA-VS-A8EK-01 22 37328895 37328895 C T CSF2RB Silent p.H367H 0.42 TCGA-VS-A8EK-01 22 38611444 38611444 C T MAFF 3'UTR 0.33 TCGA-VS-A8EK-01 22 44340640 44340640 C T PNPLA3 Silent p.F394F 0.65 TCGA-VS-A8EK-01 2 102456287 102456287 G A MAP4K4 Silent p.K260K 0.21 TCGA-VS-A8EK-01 2 10559929 10559929 C T HPCAL1 Silent p.L16L 0.12 TCGA-VS-A8EK-01 2 113763652 113763652 C T IL36A Missense_Mutation p.R38C 0.25 tolerated(0.09) benign(0.003) TCGA-VS-A8EK-01 2 132233716 132233716 C G TUBA3D 5'UTR 0.07 TCGA-VS-A8EK-01 2 148730335 148730335 G A ORC4 Silent p.I66I 0.40 TCGA-VS-A8EK-01 2 166930129 166930129 C A SCN1A Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) possibly_damaging(0.746) TCGA-VS-A8EK-01 2 173339739 173339739 C T ITGA6 Nonsense_Mutation p.Q357* 0.09 TCGA-VS-A8EK-01 2 174094453 174094453 G A MLTK Missense_Mutation p.D342N 0.20 deleterious(0.02) benign(0.006) TCGA-VS-A8EK-01 2 196545520 196545520 C T SLC39A10 Missense_Mutation p.P252S 0.30 tolerated(0.45) benign(0.002) TCGA-VS-A8EK-01 2 207017146 207017146 G C NDUFS1 Silent p.L64L 0.47 TCGA-VS-A8EK-01 2 207174939 207174939 G C ZDBF2 Missense_Mutation p.S1896T 0.12 tolerated(0.37) benign(0.153) TCGA-VS-A8EK-01 2 208632783 208632783 G A FZD5 Silent p.F227F 0.55 TCGA-VS-A8EK-01 2 216002863 216002863 C G ABCA12 Silent p.P23P 0.44 TCGA-VS-A8EK-01 2 216251509 216251509 G C FN1 Silent p.T1505T 0.60 TCGA-VS-A8EK-01 2 5837600 5837600 G A SOX11 3'UTR 0.39 TCGA-VS-A8EK-01 2 5841460 5841460 T C SOX11 3'UTR 0.27 TCGA-VS-A8EK-01 2 85024696 85024696 G C DNAH6 Missense_Mutation p.E3799Q 0.35 tolerated(0.13) benign(0.035) TCGA-VS-A8EK-01 2 89326709 89326709 C A IGKV3-11 Missense_Mutation p.D102Y 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A8EK-01 2 97353653 97353653 G A FER1L5 RNA 0.31 TCGA-VS-A8EK-01 3 113184571 113184571 C T SPICE1 Missense_Mutation p.D406N 0.24 deleterious(0) possibly_damaging(0.732) TCGA-VS-A8EK-01 3 113188066 113188066 C A SPICE1 Nonsense_Mutation p.E211* 0.33 TCGA-VS-A8EK-01 3 122152563 122152563 C A KPNA1 Nonsense_Mutation p.E399* 0.40 TCGA-VS-A8EK-01 3 126390780 126390780 G C NUP210P1 RNA 0.38 TCGA-VS-A8EK-01 3 126740996 126740996 G A PLXNA1 Silent p.L1369L 0.39 TCGA-VS-A8EK-01 3 130300696 130300696 T C COL6A6 Missense_Mutation p.L1280P 0.15 deleterious(0) possibly_damaging(0.878) TCGA-VS-A8EK-01 3 136573966 136573966 G A SLC35G2 Missense_Mutation p.D222N 0.34 deleterious(0.01) probably_damaging(1) TCGA-VS-A8EK-01 3 158422487 158422487 G A RARRES1 Intron 0.28 TCGA-VS-A8EK-01 3 160119849 160119849 G T SMC4 Missense_Mutation p.A96S 0.16 deleterious(0.03) possibly_damaging(0.852) TCGA-VS-A8EK-01 3 160218595 160218595 C A KPNA4 3'UTR 0.57 TCGA-VS-A8EK-01 3 160968597 160968597 G A NMD3 Missense_Mutation p.D471N 0.33 deleterious(0.03) probably_damaging(0.911) TCGA-VS-A8EK-01 3 164766947 164766947 G C SI Silent p.L561L 0.32 TCGA-VS-A8EK-01 3 184009212 184009212 C T ECE2 Silent p.F820F 0.28 TCGA-VS-A8EK-01 3 188202475 188202475 G A LPP Missense_Mutation p.E97K 0.50 tolerated(0.94) benign(0) TCGA-VS-A8EK-01 3 37821459 37821459 G C ITGA9 Missense_Mutation p.E912Q 0.63 deleterious(0.02) probably_damaging(0.925) TCGA-VS-A8EK-01 3 52682383 52682383 C T PBRM1 Missense_Mutation p.E264K 0.52 deleterious(0) benign(0.434) TCGA-VS-A8EK-01 3 67061398 67061398 C T KBTBD8 3'UTR 0.44 TCGA-VS-A8EK-01 3 67061484 67061484 C T KBTBD8 3'UTR 0.46 TCGA-VS-A8EK-01 3 89529777 89529777 A G EPHA3 3'UTR 0.38 TCGA-VS-A8EK-01 4 113544997 113544997 C G C4orf21 Missense_Mutation p.E46D 0.27 tolerated(0.06) benign(0.007) TCGA-VS-A8EK-01 4 120166536 120166536 G C USP53 Missense_Mutation p.L63F 0.37 deleterious(0) probably_damaging(0.996) TCGA-VS-A8EK-01 4 121616424 121616424 C T PRDM5 Missense_Mutation p.D579N 0.25 tolerated(0.24) probably_damaging(0.997) TCGA-VS-A8EK-01 4 140187597 140187597 C T MGARP 3'UTR 0.38 TCGA-VS-A8EK-01 4 146054849 146054849 G C OTUD4 3'UTR 0.25 TCGA-VS-A8EK-01 4 187197462 187197462 G T F11 Missense_Mutation p.V225F 0.57 tolerated(0.08) probably_damaging(0.999) TCGA-VS-A8EK-01 4 24572377 24572377 C T DHX15 Missense_Mutation p.V201M 0.49 deleterious(0.01) probably_damaging(1) TCGA-VS-A8EK-01 4 56502250 56502250 C A NMU Missense_Mutation p.R37L 0.36 tolerated(0.16) benign(0.068) TCGA-VS-A8EK-01 4 6864533 6864533 A G KIAA0232 Silent p.T808T 0.38 TCGA-VS-A8EK-01 4 76416837 76416837 C T RCHY1 Missense_Mutation p.E174K 0.36 tolerated(0.42) benign(0.068) TCGA-VS-A8EK-01 4 86916742 86916742 C G ARHGAP24 Missense_Mutation p.H645Q 0.38 tolerated(0.91) probably_damaging(0.925) TCGA-VS-A8EK-01 5 121799351 121799351 C T SNCAIP 3'UTR 0.58 TCGA-VS-A8EK-01 5 131728217 131728217 T A SLC22A5 Missense_Mutation p.Y454N 0.71 deleterious(0) probably_damaging(0.972) TCGA-VS-A8EK-01 5 132428391 132428391 G T HSPA4 Splice_Site p.X521_splice 0.83 TCGA-VS-A8EK-01 5 134166587 134166587 G T DDX46 3'Flank 0.65 TCGA-VS-A8EK-01 5 137426519 137426519 G C WNT8A Missense_Mutation p.E271D 0.24 tolerated(0.21) possibly_damaging(0.652) TCGA-VS-A8EK-01 5 140588509 140588509 G A PCDHB12 Silent p.Q10Q 0.42 TCGA-VS-A8EK-01 5 141249138 141249138 C T PCDH1 Intron 0.67 TCGA-VS-A8EK-01 5 153190606 153190606 C A GRIA1 Missense_Mutation p.Q858K 0.09 tolerated(0.54) benign(0.045) TCGA-VS-A8EK-01 5 163545 163545 G A PLEKHG4B Missense_Mutation p.E764K 0.30 deleterious(0) probably_damaging(0.971) TCGA-VS-A8EK-01 5 167645509 167645509 C T TENM2 Missense_Mutation p.A1538V 0.42 deleterious(0) probably_damaging(0.95) TCGA-VS-A8EK-01 5 32227953 32227953 G A MTMR12 3'UTR 0.30 TCGA-VS-A8EK-01 5 33624367 33624367 C T ADAMTS12 Silent p.V704V 0.57 TCGA-VS-A8EK-01 5 37121730 37121730 A T C5orf42 Silent p.P3004P 0.31 TCGA-VS-A8EK-01 5 43175119 43175119 G A ZNF131 Missense_Mutation p.E552K 0.24 tolerated_low_confidence(0.15) benign(0.043) TCGA-VS-A8EK-01 5 52084197 52084197 C T ITGA1 Missense_Mutation p.R4W 0.44 deleterious(0) benign(0.249) TCGA-VS-A8EK-01 5 60189293 60189293 G T ERCC8 Intron 0.47 TCGA-VS-A8EK-01 5 64920773 64920773 G C CTC-534A2.2 5'UTR 0.41 TCGA-VS-A8EK-01 5 6600342 6600342 A C NSUN2 Missense_Mutation p.N667K 0.24 tolerated(0.93) benign(0.001) TCGA-VS-A8EK-01 5 76649198 76649198 G A PDE8B Silent p.K378K 0.52 TCGA-VS-A8EK-01 5 94922275 94922275 G A ARSK Missense_Mutation p.D237N 0.47 tolerated(0.12) benign(0.012) TCGA-VS-A8EK-01 6 106992459 106992459 G C AIM1 Missense_Mutation p.E1277Q 0.63 tolerated(0.08) probably_damaging(1) TCGA-VS-A8EK-01 6 110098240 110098240 G A FIG4 Missense_Mutation p.M622I 0.37 tolerated(0.34) benign(0) TCGA-VS-A8EK-01 6 131946105 131946105 A T MED23 Missense_Mutation p.W62R 0.11 tolerated(0.35) possibly_damaging(0.537) TCGA-VS-A8EK-01 6 27799204 27799204 G A HIST1H4K Silent p.A34A 0.51 TCGA-VS-A8EK-01 6 31106466 31106466 T A PSORS1C1 Missense_Mutation p.L26H 0.75 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-VS-A8EK-01 6 31930322 31930322 C T SKIV2L Missense_Mutation p.P391S 0.76 deleterious(0.02) benign(0.211) TCGA-VS-A8EK-01 6 33261824 33261824 T C RGL2 Missense_Mutation p.D458G 0.15 deleterious(0) probably_damaging(0.977) TCGA-VS-A8EK-01 6 40999456 40999456 G C UNC5CL Silent p.T361T 0.53 TCGA-VS-A8EK-01 6 83839000 83839000 C A DOPEY1 Missense_Mutation p.T705K 0.45 tolerated(0.1) benign(0.014) TCGA-VS-A8EK-01 6 90039132 90039132 G A UBE2J1 3'UTR 0.50 TCGA-VS-A8EK-01 7 100959799 100959799 C G RABL5 Silent p.L77L 0.42 TCGA-VS-A8EK-01 7 11676304 11676304 C G THSD7A Missense_Mutation p.A159P 0.53 tolerated(0.39) benign(0.16) TCGA-VS-A8EK-01 7 121943287 121943287 C T FEZF1 Missense_Mutation p.G294R 0.22 deleterious(0) probably_damaging(0.943) TCGA-VS-A8EK-01 7 151917617 151917632 CATCCATTTCACCATC - KMT2C Frame_Shift_Del p.D1230Ifs*68 0.56 TCGA-VS-A8EK-01 7 157926524 157926524 G A PTPRN2 Silent p.A467A 0.70 TCGA-VS-A8EK-01 7 27181414 27181414 G A HOXA5 3'UTR 0.44 TCGA-VS-A8EK-01 7 75145524 75145536 ACATCTTTGAATG - Y_RNA 5'Flank 0.24 TCGA-VS-A8EK-01 7 81372193 81372193 C T HGF Intron 0.32 TCGA-VS-A8EK-01 7 81637020 81637020 T A CACNA2D1 Missense_Mutation p.Q472L 0.07 tolerated(0.29) benign(0.012) TCGA-VS-A8EK-01 7 81637026 81637026 G A CACNA2D1 Missense_Mutation p.T470I 0.08 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EK-01 7 88964850 88964850 G T ZNF804B Missense_Mutation p.D852Y 0.31 deleterious(0) benign(0.359) TCGA-VS-A8EK-01 7 91502989 91502989 C T MTERF Silent p.L373L 0.31 TCGA-VS-A8EK-01 7 99332651 99332651 G C CYP3A7 Silent p.L22L 0.33 TCGA-VS-A8EK-01 8 120818536 120818536 C G TAF2 Missense_Mutation p.W135C 0.43 tolerated(0.15) possibly_damaging(0.852) TCGA-VS-A8EK-01 8 121382961 121382961 C T COL14A1 Intron 0.46 TCGA-VS-A8EK-01 8 124449560 124449560 G A WDYHV1 Missense_Mutation p.C165Y 0.33 deleterious(0.02) probably_damaging(1) TCGA-VS-A8EK-01 8 128752790 128752790 C G MYC Silent p.V317V 0.30 TCGA-VS-A8EK-01 8 20104819 20104819 G C LZTS1 3'UTR 0.38 TCGA-VS-A8EK-01 8 20110407 20110407 G C LZTS1 Silent p.L345L 0.27 TCGA-VS-A8EK-01 8 20110611 20110611 G C LZTS1 Silent p.L277L 0.45 TCGA-VS-A8EK-01 8 26505266 26505266 A C DPYSL2 Missense_Mutation p.I411L 0.33 tolerated(0.15) benign(0.139) TCGA-VS-A8EK-01 8 32463093 32463093 C T NRG1 Missense_Mutation p.R98C 0.31 deleterious(0) probably_damaging(0.921) TCGA-VS-A8EK-01 8 38172974 38172974 C G WHSC1L1 Missense_Mutation p.R692T 0.31 tolerated(0.06) possibly_damaging(0.864) TCGA-VS-A8EK-01 8 39840269 39840269 G C IDO2 Missense_Mutation p.W151C 0.09 deleterious(0) probably_damaging(0.997) TCGA-VS-A8EK-01 8 71550099 71550100 AG - LACTB2 Frame_Shift_Del p.*289Vfs*4 0.42 TCGA-VS-A8EK-01 8 81599570 81599570 G A ZNF704 Missense_Mutation p.S150L 0.41 deleterious(0.04) probably_damaging(0.946) TCGA-VS-A8EK-01 8 97274276 97274276 C A PTDSS1 Missense_Mutation p.S3Y 0.48 deleterious_low_confidence(0.02) benign(0.084) TCGA-VS-A8EK-01 9 101602305 101602305 G T GALNT12 Nonsense_Mutation p.E412* 0.26 TCGA-VS-A8EK-01 9 111617706 111617706 C T ACTL7B Missense_Mutation p.E169K 0.36 deleterious(0) probably_damaging(0.996) TCGA-VS-A8EK-01 9 114304503 114304503 G A ZNF483 Missense_Mutation p.E430K 0.22 tolerated(0.33) possibly_damaging(0.621) TCGA-VS-A8EK-01 9 125007548 125007548 G A RBM18 Nonsense_Mutation p.Q134* 0.26 TCGA-VS-A8EK-01 9 125655299 125655299 C T RC3H2 Missense_Mutation p.D80N 0.29 tolerated(0.1) probably_damaging(0.971) TCGA-VS-A8EK-01 9 130938754 130938754 C T CIZ1 Missense_Mutation p.E607K 0.36 tolerated(0.06) possibly_damaging(0.459) TCGA-VS-A8EK-01 9 133574750 133574750 G C EXOSC2 Missense_Mutation p.R132T 0.37 deleterious(0) probably_damaging(0.981) TCGA-VS-A8EK-01 9 134504626 134504626 G C RAPGEF1 Silent p.P253P 0.18 TCGA-VS-A8EK-01 9 139413075 139413075 G T NOTCH1 Missense_Mutation p.S356Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EK-01 9 15465294 15465294 A C PSIP1 3'UTR 0.15 TCGA-VS-A8EK-01 9 36665501 36665501 C T MELK Missense_Mutation p.P444L 0.33 tolerated(0.06) probably_damaging(0.984) TCGA-VS-A8EK-01 9 43625368 43625368 C T SPATA31A6 Missense_Mutation p.E1107K 0.09 tolerated(0.12) probably_damaging(0.947) TCGA-VS-A8EK-01 9 5304514 5304514 C G RLN2 Missense_Mutation p.V23L 0.38 tolerated(0.21) benign(0.034) TCGA-VS-A8EK-01 9 73218302 73218302 C T TRPM3 Missense_Mutation p.V906I 0.23 deleterious(0.05) probably_damaging(0.994) TCGA-VS-A8EK-01 9 88247676 88247676 G A AGTPBP1 Missense_Mutation p.S599F 0.24 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EK-01 9 90582223 90582223 C T CDK20 3'UTR 0.31 TCGA-VS-A8EK-01 9 99799880 99799880 C T CTSV Silent p.R48R 0.35 TCGA-VS-A8EK-01 X 100278602 100278602 A G TRMT2B Missense_Mutation p.Y205H 0.50 deleterious(0) probably_damaging(0.971) TCGA-VS-A8EK-01 X 10031525 10031525 G A WWC3 5'UTR 0.26 TCGA-VS-A8EK-01 X 122624383 122624383 A T GRIA3 3'UTR 0.08 TCGA-VS-A8EK-01 X 123044181 123044181 T A XIAP 3'UTR 0.27 TCGA-VS-A8EK-01 X 123540216 123540216 G A TENM1 Silent p.L1702L 0.59 TCGA-VS-A8EK-01 X 125299644 125299644 C T DCAF12L2 Silent p.T88T 0.26 TCGA-VS-A8EK-01 X 12904005 12904005 C T TLR7 Silent p.L126L 0.43 TCGA-VS-A8EK-01 X 134156492 134156492 C T FAM127C 5'UTR 0.07 TCGA-VS-A8EK-01 X 134186129 134186129 G A FAM127B Missense_Mutation p.R4W 0.16 deleterious(0) probably_damaging(0.972) TCGA-VS-A8EK-01 X 134494885 134494885 C A ZNF449 Missense_Mutation p.H481N 0.55 deleterious(0) probably_damaging(0.996) TCGA-VS-A8EK-01 X 135592332 135592332 G A HTATSF1 Missense_Mutation p.G339D 0.11 deleterious(0) probably_damaging(0.958) TCGA-VS-A8EK-01 X 140993369 140993369 G T MAGEC1 Missense_Mutation p.G60V 0.21 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-VS-A8EK-01 X 151366155 151366156 - G GABRA3 Frame_Shift_Ins p.Q294Pfs*38 0.25 TCGA-VS-A8EK-01 X 152482042 152482042 C - MAGEA1 3'UTR 0.39 TCGA-VS-A8EK-01 X 153694179 153694179 C T PLXNA3 Missense_Mutation p.R841C 0.56 deleterious(0) probably_damaging(0.937) TCGA-VS-A8EK-01 X 30872288 30872288 G T TAB3 Missense_Mutation p.S498R 0.29 tolerated(0.57) benign(0.004) TCGA-VS-A8EK-01 X 37027073 37027073 G C FAM47C Missense_Mutation p.C197S 0.05 tolerated(0.41) possibly_damaging(0.461) TCGA-VS-A8EK-01 X 46917879 46917879 A G JADE3 Silent p.R624R 0.36 TCGA-VS-A8EK-01 X 47046025 47046025 T C RBM10 3'UTR 0.11 TCGA-VS-A8EK-01 X 49106736 49106736 G T CCDC22 3'UTR 0.37 TCGA-VS-A8EK-01 X 55185570 55185570 C T FAM104B Missense_Mutation p.D38N 0.35 tolerated(0.07) probably_damaging(0.99) TCGA-VS-A8EK-01 X 62571145 62571145 G A SPIN4 5'UTR 0.29 TCGA-VS-A8EK-01 X 63409392 63409392 G A AMER1 3'UTR 0.09 TCGA-VS-A8EL-01 10 102510607 102510607 C G PAX2 Missense_Mutation p.I123M 0.23 deleterious(0) probably_damaging(0.992) TCGA-VS-A8EL-01 10 104849474 104849474 G T NT5C2 Nonsense_Mutation p.C547* 0.26 TCGA-VS-A8EL-01 10 105138042 105138042 C T TAF5 Missense_Mutation p.S283F 0.16 tolerated(0.1) possibly_damaging(0.901) TCGA-VS-A8EL-01 10 105209200 105209200 C G CALHM2 Missense_Mutation p.D167H 0.21 tolerated(0.12) benign(0.296) TCGA-VS-A8EL-01 10 124896822 124896822 G A HMX3 Missense_Mutation p.E217K 0.36 tolerated(0.25) benign(0.4) TCGA-VS-A8EL-01 10 133786555 133786555 C G BNIP3 Missense_Mutation p.E89Q 0.12 deleterious(0.04) probably_damaging(0.944) TCGA-VS-A8EL-01 10 134040375 134040375 C T STK32C Missense_Mutation p.E190K 0.14 deleterious(0) probably_damaging(0.993) TCGA-VS-A8EL-01 10 14816344 14816344 C T FAM107B Missense_Mutation p.D107N 0.17 tolerated_low_confidence(0.12) benign(0.003) TCGA-VS-A8EL-01 10 26562562 26562562 C G GAD2 Intron 0.27 TCGA-VS-A8EL-01 10 43292627 43292627 C T BMS1 Silent p.L645L 0.10 TCGA-VS-A8EL-01 10 70174723 70174723 G A DNA2 3'UTR 0.17 TCGA-VS-A8EL-01 10 70992858 70992858 C G HKDC1 Missense_Mutation p.S155C 0.30 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 10 72494932 72494932 G A ADAMTS14 Missense_Mutation p.D457N 0.26 deleterious(0.03) benign(0.072) TCGA-VS-A8EL-01 10 74646017 74646017 C T MCU 3'UTR 0.26 TCGA-VS-A8EL-01 10 74896565 74896565 G A ECD Missense_Mutation p.S567F 0.30 deleterious(0.03) benign(0.16) TCGA-VS-A8EL-01 10 75143364 75143364 C T ANXA7 Missense_Mutation p.D262N 0.17 deleterious(0.01) probably_damaging(1) TCGA-VS-A8EL-01 10 76586453 76586453 G A KAT6B 5'UTR 0.26 TCGA-VS-A8EL-01 10 7780682 7780682 C G ITIH2 Missense_Mutation p.Q686E 0.28 tolerated(0.61) benign(0.001) TCGA-VS-A8EL-01 10 86273291 86273291 C T CCSER2 Missense_Mutation p.P833S 0.15 deleterious(0) benign(0.068) TCGA-VS-A8EL-01 10 93250963 93250963 C T HECTD2 Silent p.L400L 0.18 TCGA-VS-A8EL-01 10 96282125 96282125 G - TBC1D12 Frame_Shift_Del p.E639Kfs*26 0.21 TCGA-VS-A8EL-01 11 1086104 1086104 C T MUC2 Missense_Mutation p.P982S 0.27 probably_damaging(0.997) TCGA-VS-A8EL-01 11 113853871 113853871 C T HTR3A Missense_Mutation p.P141L 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-VS-A8EL-01 11 117059893 117059893 C G SIDT2 Silent p.L429L 0.48 TCGA-VS-A8EL-01 11 118754684 118754684 G A CXCR5 Missense_Mutation p.E12K 0.29 tolerated(0.92) benign(0.014) TCGA-VS-A8EL-01 11 123994096 123994096 G A VWA5A Silent p.K318K 0.27 TCGA-VS-A8EL-01 11 124539278 124539278 C T SIAE Missense_Mutation p.M69I 0.40 tolerated(0.11) benign(0.011) TCGA-VS-A8EL-01 11 133902359 133902359 G A RP11-713P17.3 RNA 0.38 TCGA-VS-A8EL-01 11 17632180 17632180 C T OTOG Missense_Mutation p.A1790V 0.26 benign(0) TCGA-VS-A8EL-01 11 18505476 18505476 C T TSG101 Missense_Mutation p.D262N 0.22 deleterious(0) possibly_damaging(0.864) TCGA-VS-A8EL-01 11 26677920 26677920 C G ANO3 Intron 0.21 TCGA-VS-A8EL-01 11 27390645 27390645 C T LGR4 Missense_Mutation p.R542H 0.27 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 11 33566863 33566863 G A KIAA1549L Silent p.T811T 0.18 TCGA-VS-A8EL-01 11 56128190 56128190 T G OR8J1 Silent p.A156A 0.17 TCGA-VS-A8EL-01 11 587389 587389 C T PHRF1 Silent p.F115F 0.23 TCGA-VS-A8EL-01 11 6231341 6231341 G A C11orf42 Missense_Mutation p.E112K 0.17 tolerated(0.12) possibly_damaging(0.79) TCGA-VS-A8EL-01 11 62505817 62505817 G C TTC9C Missense_Mutation p.R160T 0.21 deleterious(0.04) benign(0.007) TCGA-VS-A8EL-01 11 62553746 62553746 C T TAF6L Silent p.V325V 0.29 TCGA-VS-A8EL-01 11 721610 721610 C T EPS8L2 Missense_Mutation p.R272W 0.19 deleterious(0) probably_damaging(0.995) TCGA-VS-A8EL-01 11 73570977 73570977 G C MRPL48 Missense_Mutation p.E133Q 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-VS-A8EL-01 11 77774916 77774916 G C THRSP 5'UTR 0.53 TCGA-VS-A8EL-01 11 85309732 85309732 G C DLG2 Missense_Mutation p.I3M 0.27 deleterious_low_confidence(0) benign(0.277) TCGA-VS-A8EL-01 11 8664674 8664674 C G TRIM66 Splice_Site p.X222_splice 0.18 TCGA-VS-A8EL-01 12 106704939 106704939 C T TCP11L2 Missense_Mutation p.S29L 0.12 tolerated(0.08) benign(0.416) TCGA-VS-A8EL-01 12 109702174 109702174 G C ACACB Missense_Mutation p.E2309Q 0.26 tolerated(0.1) possibly_damaging(0.769) TCGA-VS-A8EL-01 12 111744758 111744758 C T CUX2 Missense_Mutation p.R298W 0.33 deleterious(0) probably_damaging(0.969) TCGA-VS-A8EL-01 12 112589699 112589699 G A TRAFD1 Missense_Mutation p.M458I 0.20 tolerated(0.35) benign(0.006) TCGA-VS-A8EL-01 12 117013794 117013794 G C MAP1LC3B2 Missense_Mutation p.R16T 0.31 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 12 117014295 117014295 G A MAP1LC3B2 3'UTR 0.29 TCGA-VS-A8EL-01 12 123034374 123034374 C T KNTC1 Missense_Mutation p.S350F 0.36 deleterious(0) probably_damaging(0.979) TCGA-VS-A8EL-01 12 132328622 132328622 G A MMP17 Missense_Mutation p.A322T 0.20 tolerated(0.45) benign(0.002) TCGA-VS-A8EL-01 12 14939618 14939618 G A WBP11 3'UTR 0.23 TCGA-VS-A8EL-01 12 32138316 32138316 C G KIAA1551 Missense_Mutation p.S1476C 0.17 deleterious(0) probably_damaging(0.991) TCGA-VS-A8EL-01 12 46318597 46318597 G C SCAF11 Missense_Mutation p.Q1274E 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-VS-A8EL-01 12 5154895 5154895 G C KCNA5 Missense_Mutation p.D528H 0.25 deleterious(0) possibly_damaging(0.681) TCGA-VS-A8EL-01 12 55357703 55357703 C T TESPA1 Missense_Mutation p.D160N 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 12 56214128 56214128 G A ORMDL2 Silent p.P137P 0.19 TCGA-VS-A8EL-01 12 57000078 57000078 G A BAZ2A Nonsense_Mutation p.Q740* 0.22 TCGA-VS-A8EL-01 12 57922176 57922176 G A MBD6 Missense_Mutation p.E885K 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.828) TCGA-VS-A8EL-01 12 58146107 58146107 C T CDK4 5'UTR 0.28 TCGA-VS-A8EL-01 12 6125951 6125951 G A VWF Silent p.F1713F 0.19 TCGA-VS-A8EL-01 12 6664475 6664475 G C IFFO1 Missense_Mutation p.L241V 0.15 deleterious(0.01) probably_damaging(0.963) TCGA-VS-A8EL-01 12 6711643 6711643 C T CHD4 Missense_Mutation p.E41K 0.27 deleterious_low_confidence(0.04) benign(0.292) TCGA-VS-A8EL-01 12 77157999 77157999 G A ZDHHC17 5'UTR 0.31 TCGA-VS-A8EL-01 12 92537476 92537476 C T BTG1 3'UTR 0.28 TCGA-VS-A8EL-01 12 97147663 97147663 C T C12orf55 Silent p.I2609I 0.31 TCGA-VS-A8EL-01 13 111158815 111158815 G A COL4A2 Missense_Mutation p.V1486I 0.07 unknown(0) TCGA-VS-A8EL-01 13 114098845 114098845 C T ADPRHL1 Missense_Mutation p.E92K 0.29 tolerated(0.51) possibly_damaging(0.9) TCGA-VS-A8EL-01 13 115067277 115067277 G A UPF3A Missense_Mutation p.R360K 0.24 tolerated(0.14) benign(0.098) TCGA-VS-A8EL-01 13 25418847 25418847 G C RNF17 Missense_Mutation p.W963C 0.34 deleterious(0) probably_damaging(0.994) TCGA-VS-A8EL-01 13 48836059 48836059 C T ITM2B 3'UTR 0.31 TCGA-VS-A8EL-01 13 72440843 72440843 G A DACH1 Missense_Mutation p.T22M 0.26 unknown(0) TCGA-VS-A8EL-01 13 99109463 99109463 G C STK24 Missense_Mutation p.I418M 0.23 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-VS-A8EL-01 14 105404630 105404630 C G AHNAK2 Missense_Mutation p.E5720Q 0.20 possibly_damaging(0.549) TCGA-VS-A8EL-01 14 21024540 21024540 C G RNASE9 3'UTR 0.27 TCGA-VS-A8EL-01 14 21462962 21462962 G C METTL17 Missense_Mutation p.D260H 0.12 deleterious(0) probably_damaging(0.988) TCGA-VS-A8EL-01 14 21875080 21875080 C G CHD8 Missense_Mutation p.D948H 0.32 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 14 24588364 24588364 C T DCAF11 Missense_Mutation p.R264C 0.12 deleterious(0.01) possibly_damaging(0.772) TCGA-VS-A8EL-01 14 36096904 36096904 C T RALGAPA1 Silent p.E1577E 0.25 TCGA-VS-A8EL-01 14 36333100 36333100 C G BRMS1L Nonsense_Mutation p.S188* 0.26 TCGA-VS-A8EL-01 14 36337213 36337213 G A BRMS1L Missense_Mutation p.D277N 0.22 tolerated(0.39) benign(0.002) TCGA-VS-A8EL-01 14 36789744 36789744 C A MBIP Silent p.L17L 0.09 TCGA-VS-A8EL-01 14 51489567 51489567 C T TRIM9 Missense_Mutation p.E343K 0.12 deleterious(0) possibly_damaging(0.542) TCGA-VS-A8EL-01 14 55512242 55512242 G C SOCS4 3'UTR 0.11 TCGA-VS-A8EL-01 14 55513074 55513074 G C SOCS4 3'UTR 0.17 TCGA-VS-A8EL-01 14 65392766 65392766 G A CHURC1-FNTB Missense_Mutation p.E73K 0.19 deleterious(0.04) probably_damaging(0.963) TCGA-VS-A8EL-01 14 67648286 67648286 G A GPHN 3'UTR 0.15 TCGA-VS-A8EL-01 14 71051484 71051484 G A MED6 3'UTR 0.21 TCGA-VS-A8EL-01 14 71444873 71444873 G A PCNX Missense_Mutation p.D607N 0.24 deleterious(0) possibly_damaging(0.735) TCGA-VS-A8EL-01 14 77765093 77765093 G A POMT2 Silent p.F315F 0.13 TCGA-VS-A8EL-01 14 93392964 93392964 C T CHGA Silent p.I36I 0.23 TCGA-VS-A8EL-01 15 32928266 32928266 C G ARHGAP11A Intron 0.21 TCGA-VS-A8EL-01 15 40913658 40913658 C T CASC5 Missense_Mutation p.S425L 0.22 deleterious(0.01) benign(0.049) TCGA-VS-A8EL-01 15 40937963 40937963 C T CASC5 Missense_Mutation p.S2026L 0.08 deleterious(0) probably_damaging(0.996) TCGA-VS-A8EL-01 15 41037311 41037311 G C RMDN3 Missense_Mutation p.S224C 0.29 deleterious(0.05) benign(0.413) TCGA-VS-A8EL-01 15 41146610 41146610 G A SPINT1 Missense_Mutation p.C335Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 15 41813245 41813245 G C RPAP1 Missense_Mutation p.Q1047E 0.16 tolerated(1) benign(0.002) TCGA-VS-A8EL-01 15 45059932 45059932 G C TRIM69 Missense_Mutation p.E489Q 0.34 tolerated(0.07) probably_damaging(0.944) TCGA-VS-A8EL-01 15 50741632 50741632 C G USP8 Missense_Mutation p.I95M 0.31 deleterious(0.05) benign(0.29) TCGA-VS-A8EL-01 15 55611423 55611423 C A PIGB 5'UTR 0.24 TCGA-VS-A8EL-01 15 55838754 55838754 G C PYGO1 Missense_Mutation p.Q243E 0.21 tolerated(0.46) possibly_damaging(0.467) TCGA-VS-A8EL-01 15 63054555 63054555 C G TLN2 Missense_Mutation p.L1622V 0.21 deleterious(0) possibly_damaging(0.694) TCGA-VS-A8EL-01 15 64977453 64977453 G A ZNF609 3'UTR 0.12 TCGA-VS-A8EL-01 15 64977482 64977482 G A ZNF609 3'UTR 0.12 TCGA-VS-A8EL-01 15 67482843 67482843 C T SMAD3 Missense_Mutation p.S416F 0.21 deleterious(0) possibly_damaging(0.807) TCGA-VS-A8EL-01 15 69072431 69072431 C T ANP32A Missense_Mutation p.D247N 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-VS-A8EL-01 15 72190958 72190958 C T MYO9A Missense_Mutation p.G1296S 0.15 tolerated_low_confidence(0.05) benign(0.387) TCGA-VS-A8EL-01 15 73624589 73624589 G A HCN4 Silent p.I418I 0.25 TCGA-VS-A8EL-01 15 74948118 74948118 C T EDC3 Missense_Mutation p.R259Q 0.23 tolerated(0.1) probably_damaging(0.91) TCGA-VS-A8EL-01 15 78882553 78882553 C T CHRNA5 Missense_Mutation p.L274F 0.22 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 15 80191282 80191282 G T ST20 Missense_Mutation p.F77L 0.16 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-VS-A8EL-01 15 86801239 86801239 G C AGBL1 Missense_Mutation p.D270H 0.24 deleterious(0) benign(0.327) TCGA-VS-A8EL-01 15 86838525 86838525 G A AGBL1 Missense_Mutation p.E708K 0.20 tolerated(0.71) benign(0.003) TCGA-VS-A8EL-01 16 1260953 1260953 G A CACNA1H Missense_Mutation p.R1402Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-VS-A8EL-01 16 15116586 15116586 A G PDXDC1 Missense_Mutation p.K372R 0.11 deleterious(0.01) benign(0.222) TCGA-VS-A8EL-01 16 2090218 2090218 C T NTHL1 Missense_Mutation p.R244K 0.26 deleterious(0) probably_damaging(0.98) TCGA-VS-A8EL-01 16 30750774 30750774 G A SRCAP Missense_Mutation p.R3138H 0.24 unknown(0) TCGA-VS-A8EL-01 16 46729567 46729567 G T ORC6 Missense_Mutation p.K181N 0.23 deleterious(0) possibly_damaging(0.873) TCGA-VS-A8EL-01 16 48278406 48278406 C T LONP2 Missense_Mutation p.A36V 0.26 deleterious(0.03) benign(0.111) TCGA-VS-A8EL-01 16 48595844 48595844 C G N4BP1 Missense_Mutation p.R237T 0.23 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 16 56530904 56530904 C T BBS2 Missense_Mutation p.E629K 0.24 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 16 66762993 66762993 C G DYNC1LI2 Missense_Mutation p.D351H 0.22 deleterious(0) probably_damaging(0.919) TCGA-VS-A8EL-01 16 67188361 67188361 G A TRADD 3'UTR 0.24 TCGA-VS-A8EL-01 16 67942627 67942627 C A PSKH1 5'UTR 0.18 TCGA-VS-A8EL-01 16 71571153 71571153 G A CHST4 Silent p.L191L 0.17 TCGA-VS-A8EL-01 16 71764010 71764010 G A AP1G1 3'Flank 0.12 TCGA-VS-A8EL-01 16 72188238 72188238 C T PMFBP1 Missense_Mutation p.E96K 0.37 deleterious(0) possibly_damaging(0.886) TCGA-VS-A8EL-01 16 74330833 74330833 G A PSMD7 Silent p.Q7Q 0.26 TCGA-VS-A8EL-01 16 75146372 75146372 C T LDHD Missense_Mutation p.G469E 0.19 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 16 75682407 75682407 C G TERF2IP Silent p.L209L 0.32 TCGA-VS-A8EL-01 16 84214695 84214695 G A TAF1C Missense_Mutation p.S447F 0.24 tolerated(0.07) possibly_damaging(0.493) TCGA-VS-A8EL-01 16 86601007 86601007 G C FOXC2 Missense_Mutation p.Q22H 0.25 deleterious(0) probably_damaging(0.986) TCGA-VS-A8EL-01 16 89347156 89347156 C G ANKRD11 Missense_Mutation p.E1932Q 0.24 benign(0.135) TCGA-VS-A8EL-01 16 89713041 89713041 C T CHMP1A Missense_Mutation p.E155K 0.10 deleterious(0) benign(0.184) TCGA-VS-A8EL-01 16 89813078 89813078 G A FANCA Silent p.L1143L 0.30 TCGA-VS-A8EL-01 17 11593306 11593306 G A DNAH9 Silent p.L1389L 0.39 TCGA-VS-A8EL-01 17 11757503 11757503 G A DNAH9 Missense_Mutation p.E3231K 0.26 possibly_damaging(0.588) TCGA-VS-A8EL-01 17 11757505 11757505 G A DNAH9 Silent p.E3231E 0.26 TCGA-VS-A8EL-01 17 1478730 1478730 C G SLC43A2 3'UTR 0.33 TCGA-VS-A8EL-01 17 15133296 15133296 G A PMP22 3'UTR 0.24 TCGA-VS-A8EL-01 17 15646245 15646245 G C TBC1D26 3'UTR 0.21 TCGA-VS-A8EL-01 17 18281232 18281232 G A EVPLL 5'UTR 0.18 TCGA-VS-A8EL-01 17 2227841 2227841 C G TSR1 Silent p.L731L 0.22 TCGA-VS-A8EL-01 17 2598161 2598161 C A CLUH Missense_Mutation p.D909Y 0.15 deleterious(0.03) benign(0.212) TCGA-VS-A8EL-01 17 26857776 26857776 C T FOXN1 Silent p.I280I 0.24 TCGA-VS-A8EL-01 17 27061853 27061853 T G NEK8 Missense_Mutation p.L106R 0.28 deleterious(0) probably_damaging(0.997) TCGA-VS-A8EL-01 17 29588851 29588851 C G NF1 Nonsense_Mutation p.S1567* 0.29 TCGA-VS-A8EL-01 17 37880223 37880223 G A ERBB2 Missense_Mutation p.R756K 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-VS-A8EL-01 17 37880255 37880255 A T ERBB2 Missense_Mutation p.I767F 0.35 tolerated(0.32) probably_damaging(1) TCGA-VS-A8EL-01 17 37880261 37880261 G A ERBB2 Missense_Mutation p.D769N 0.31 deleterious(0.03) probably_damaging(1) TCGA-VS-A8EL-01 17 40042384 40042384 C T ACLY Missense_Mutation p.V685M 0.19 deleterious(0) probably_damaging(0.957) TCGA-VS-A8EL-01 17 40474461 40474461 T A STAT3 Missense_Mutation p.N647I 0.26 deleterious(0.02) benign(0.116) TCGA-VS-A8EL-01 17 43311557 43311557 C A FMNL1 Missense_Mutation p.L202M 0.43 tolerated(0.21) unknown(0) TCGA-VS-A8EL-01 17 43912775 43912781 CTGAACA - CRHR1 3'UTR 0.40 TCGA-VS-A8EL-01 17 4449148 4449148 C T MYBBP1A Silent p.K638K 0.22 TCGA-VS-A8EL-01 17 65907696 65907696 G T BPTF Missense_Mutation p.K1232N 0.12 possibly_damaging(0.637) TCGA-VS-A8EL-01 17 71167186 71167186 G A SSTR2 3'Flank 0.33 TCGA-VS-A8EL-01 17 7323773 7323773 G T SPEM1 Missense_Mutation p.D24Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-VS-A8EL-01 17 73611948 73611948 G A MYO15B 3'Flank 0.40 TCGA-VS-A8EL-01 17 7481170 7481170 G A EIF4A1 Missense_Mutation p.R311Q 0.16 deleterious(0.02) benign(0.112) TCGA-VS-A8EL-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.38 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 17 8193014 8193014 G A RANGRF Intron 0.29 TCGA-VS-A8EL-01 17 9814132 9814132 C T GAS7 3'Flank 0.19 TCGA-VS-A8EL-01 18 15316658 15316658 C T RNU6-721P 3'Flank 0.22 TCGA-VS-A8EL-01 18 30791916 30791916 C T CCDC178 Missense_Mutation p.D728N 0.17 tolerated(0.07) benign(0.027) TCGA-VS-A8EL-01 18 44775367 44775367 C A SKOR2 Missense_Mutation p.C63F 0.33 probably_damaging(1) TCGA-VS-A8EL-01 18 56653396 56653396 G A ZNF532 3'UTR 0.29 TCGA-VS-A8EL-01 19 11577020 11577020 G A ELAVL3 Silent p.L100L 0.24 TCGA-VS-A8EL-01 19 14049009 14049009 C T PODNL1 Missense_Mutation p.E3K 0.24 deleterious_low_confidence(0) benign(0.001) TCGA-VS-A8EL-01 19 14261286 14261286 T A LPHN1 3'UTR 0.19 TCGA-VS-A8EL-01 19 15271609 15271609 G A NOTCH3 Missense_Mutation p.T2277I 0.22 tolerated(0.4) benign(0.013) TCGA-VS-A8EL-01 19 15295811 15295811 G C NOTCH3 Silent p.L772L 0.19 TCGA-VS-A8EL-01 19 17373627 17373627 G A USHBP1 Silent p.L126L 0.24 TCGA-VS-A8EL-01 19 17598290 17598290 C T SLC27A1 Missense_Mutation p.T249M 0.21 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 19 17760383 17760383 G C UNC13A Missense_Mutation p.L485V 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-VS-A8EL-01 19 21132044 21132044 T A ZNF85 Missense_Mutation p.S242T 0.19 tolerated(0.12) benign(0.002) TCGA-VS-A8EL-01 19 2252738 2252738 C T JSRP1 Missense_Mutation p.E196K 0.22 tolerated(0.18) possibly_damaging(0.801) TCGA-VS-A8EL-01 19 22784230 22784230 G A AC011467.1 5'Flank 0.20 TCGA-VS-A8EL-01 19 33292745 33292745 G T TDRD12 Missense_Mutation p.K721N 0.13 tolerated(0.4) possibly_damaging(0.788) TCGA-VS-A8EL-01 19 3435104 3435104 C T NFIC Missense_Mutation p.S286L 0.16 deleterious(0) probably_damaging(0.973) TCGA-VS-A8EL-01 19 35863018 35863018 G A GPR42 Missense_Mutation p.E253K 0.47 tolerated(0.68) benign(0.009) TCGA-VS-A8EL-01 19 36236023 36236023 C T U2AF1L4 Intron 0.19 TCGA-VS-A8EL-01 19 37005480 37005480 C T ZNF260 Missense_Mutation p.E221K 0.28 tolerated(0.25) probably_damaging(0.94) TCGA-VS-A8EL-01 19 41025417 41025417 G A SPTBN4 Missense_Mutation p.E1005K 0.29 deleterious(0) possibly_damaging(0.828) TCGA-VS-A8EL-01 19 41066379 41066379 G A SPTBN4 Intron 0.32 TCGA-VS-A8EL-01 19 41249849 41249849 G A C19orf54 Nonsense_Mutation p.Q227* 0.33 TCGA-VS-A8EL-01 19 42260658 42260658 G C CEACAM6 Missense_Mutation p.R72T 0.19 tolerated(0.69) benign(0.044) TCGA-VS-A8EL-01 19 43687585 43687585 G C PSG5 Intron 0.17 TCGA-VS-A8EL-01 19 44301925 44301925 C T LYPD5 Missense_Mutation p.E192K 0.30 tolerated(0.92) benign(0.012) TCGA-VS-A8EL-01 19 46190745 46190745 C G SNRPD2 3'UTR 0.16 TCGA-VS-A8EL-01 19 47423990 47423990 G T ARHGAP35 Silent p.L686L 0.24 TCGA-VS-A8EL-01 19 48800577 48800577 G A CCDC114 Missense_Mutation p.L557F 0.33 tolerated(0.15) benign(0.004) TCGA-VS-A8EL-01 19 49387209 49387209 C T TULP2 Missense_Mutation p.E386K 0.30 deleterious(0.01) probably_damaging(1) TCGA-VS-A8EL-01 19 49993274 49993274 G A RPL13A Intron 0.19 TCGA-VS-A8EL-01 19 51892293 51892293 G A C19orf84 Missense_Mutation p.P169L 0.20 tolerated(0.28) benign(0) TCGA-VS-A8EL-01 19 52033017 52033017 G C SIGLEC6 Missense_Mutation p.L325V 0.17 tolerated(0.08) possibly_damaging(0.56) TCGA-VS-A8EL-01 19 53886595 53886595 C T ZNF525 3'UTR 0.31 TCGA-VS-A8EL-01 19 55282333 55282333 G A KIR2DL1 Missense_Mutation p.E23K 0.23 tolerated(0.86) benign(0.137) TCGA-VS-A8EL-01 19 57325726 57325726 C T PEG3 Missense_Mutation p.E1362K 0.22 tolerated(0.3) benign(0.005) TCGA-VS-A8EL-01 19 57327030 57327030 G A PEG3 Missense_Mutation p.S927L 0.12 deleterious(0) possibly_damaging(0.715) TCGA-VS-A8EL-01 19 5831470 5831470 C T FUT6 3'UTR 0.29 TCGA-VS-A8EL-01 19 58427840 58427840 G A ZNF417 5'UTR 0.16 TCGA-VS-A8EL-01 19 7925531 7925531 G A EVI5L Missense_Mutation p.G487R 0.26 tolerated(0.24) possibly_damaging(0.484) TCGA-VS-A8EL-01 19 8591356 8591356 A G MYO1F Silent p.D917D 0.25 TCGA-VS-A8EL-01 1 101200301 101200301 G A VCAM1 Missense_Mutation p.R679K 0.24 tolerated(0.23) benign(0.116) TCGA-VS-A8EL-01 1 110163824 110163824 C T AMPD2 Silent p.G63G 0.23 TCGA-VS-A8EL-01 1 11142863 11142863 C G EXOSC10 Missense_Mutation p.D388H 0.24 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 1 11901192 11901192 C G CLCN6 3'UTR 0.31 TCGA-VS-A8EL-01 1 12721855 12721855 C T AADACL4 Silent p.L147L 0.39 TCGA-VS-A8EL-01 1 1325733 1325733 C T CCNL2 Missense_Mutation p.E295K 0.17 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EL-01 1 1356286 1356286 C T ANKRD65 Missense_Mutation p.E34K 0.14 tolerated(0.12) possibly_damaging(0.486) TCGA-VS-A8EL-01 1 149949487 149949487 C G OTUD7B 5'UTR 0.14 TCGA-VS-A8EL-01 1 150129172 150129172 C G PLEKHO1 Missense_Mutation p.S129C 0.08 deleterious(0.03) possibly_damaging(0.859) TCGA-VS-A8EL-01 1 150808829 150808829 G A ARNT Silent p.L209L 0.46 TCGA-VS-A8EL-01 1 151990969 151990969 C T NBPF18P RNA 0.39 TCGA-VS-A8EL-01 1 152279133 152279133 G A FLG Silent p.S2743S 0.19 TCGA-VS-A8EL-01 1 154129998 154129998 G A NUP210L 5'Flank 0.15 TCGA-VS-A8EL-01 1 155159978 155159978 G T MUC1 Missense_Mutation p.L386M 0.26 deleterious(0) probably_damaging(0.986) TCGA-VS-A8EL-01 1 155185386 155185386 G C MTX1 3'Flank 0.26 TCGA-VS-A8EL-01 1 156437823 156437823 C T MEF2D Missense_Mutation p.E506K 0.18 deleterious(0) probably_damaging(0.991) TCGA-VS-A8EL-01 1 15820452 15820452 C A CASP9 Nonsense_Mutation p.E365* 0.22 TCGA-VS-A8EL-01 1 160106697 160106697 G A ATP1A2 Missense_Mutation p.E906K 0.44 tolerated(0.23) benign(0.087) TCGA-VS-A8EL-01 1 160151555 160151555 C T ATP1A4 Missense_Mutation p.L940F 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 1 160151560 160151560 C T ATP1A4 Silent p.I941I 0.22 TCGA-VS-A8EL-01 1 161143790 161143790 C T B4GALT3 Missense_Mutation p.R180Q 0.41 tolerated(0.3) possibly_damaging(0.842) TCGA-VS-A8EL-01 1 16174631 16174631 C T SPEN Silent p.I23I 0.28 TCGA-VS-A8EL-01 1 162551091 162551091 C G UAP1 Missense_Mutation p.L226V 0.23 deleterious(0.03) probably_damaging(0.995) TCGA-VS-A8EL-01 1 16459741 16459741 C G EPHA2 Missense_Mutation p.E663Q 0.23 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 1 16460034 16460034 C G EPHA2 Missense_Mutation p.L602F 0.28 deleterious(0.01) probably_damaging(0.924) TCGA-VS-A8EL-01 1 169762317 169762317 C T METTL18 Missense_Mutation p.D174N 0.11 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 1 171511340 171511340 G A PRRC2C Missense_Mutation p.G1577S 0.25 unknown(0) TCGA-VS-A8EL-01 1 173799891 173799891 G C DARS2 Missense_Mutation p.E130Q 0.17 tolerated(0.33) benign(0.039) TCGA-VS-A8EL-01 1 180163433 180163433 G A QSOX1 Silent p.Q458Q 0.31 TCGA-VS-A8EL-01 1 18023460 18023460 G T ARHGEF10L Missense_Mutation p.R1142L 0.30 tolerated(0.26) benign(0.006) TCGA-VS-A8EL-01 1 180832967 180832967 G A XPR1 Missense_Mutation p.G542E 0.21 deleterious(0.02) possibly_damaging(0.887) TCGA-VS-A8EL-01 1 181058909 181058909 G T IER5 Nonsense_Mutation p.E291* 0.29 TCGA-VS-A8EL-01 1 184589508 184589508 G A C1orf21 3'UTR 0.45 TCGA-VS-A8EL-01 1 1922368 1922368 C T C1orf222 Translation_Start_Site p.E1? 0.19 tolerated(0.28) unknown(0) TCGA-VS-A8EL-01 1 20009736 20009736 C T TMCO4 Missense_Mutation p.G568R 0.15 tolerated_low_confidence(0.56) benign(0.002) TCGA-VS-A8EL-01 1 203698809 203698809 G A ATP2B4 Intron 0.35 TCGA-VS-A8EL-01 1 209799263 209799263 C T LAMB3 Missense_Mutation p.R569Q 0.29 deleterious(0.02) probably_damaging(1) TCGA-VS-A8EL-01 1 210415016 210415016 G C SERTAD4 Missense_Mutation p.L135F 0.39 deleterious(0) probably_damaging(0.972) TCGA-VS-A8EL-01 1 211093134 211093134 G A KCNH1 Missense_Mutation p.S437L 0.18 tolerated(0.17) benign(0.005) TCGA-VS-A8EL-01 1 211486298 211486298 G C RCOR3 Missense_Mutation p.E438Q 0.14 tolerated(0.16) benign(0.26) TCGA-VS-A8EL-01 1 225418785 225418785 G A DNAH14 Silent p.L1723L 0.33 TCGA-VS-A8EL-01 1 225488603 225488603 C T DNAH14 Silent p.I2088I 0.40 TCGA-VS-A8EL-01 1 2282854 2282854 C T MORN1 Intron 0.13 TCGA-VS-A8EL-01 1 228522585 228522585 C G OBSCN Missense_Mutation p.S6343C 0.38 probably_damaging(0.971) TCGA-VS-A8EL-01 1 235318193 235318193 C T RBM34 Intron 0.38 TCGA-VS-A8EL-01 1 24128752 24128752 C G HMGCL 3'UTR 0.22 TCGA-VS-A8EL-01 1 247063543 247063543 C T AHCTF1 Missense_Mutation p.G428E 0.40 tolerated(0.39) possibly_damaging(0.71) TCGA-VS-A8EL-01 1 248112861 248112861 G A OR2L8 Silent p.K234K 0.23 TCGA-VS-A8EL-01 1 27059167 27059167 G A ARID1A Missense_Mutation p.E602K 0.20 benign(0.004) TCGA-VS-A8EL-01 1 27271953 27271953 G A NUDC Missense_Mutation p.E272K 0.27 deleterious(0) probably_damaging(0.984) TCGA-VS-A8EL-01 1 27589718 27589718 G C WDTC1 Missense_Mutation p.E42Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 1 27876247 27876247 G A AHDC1 Nonsense_Mutation p.Q794* 0.22 TCGA-VS-A8EL-01 1 3692434 3692434 C T SMIM1 Silent p.I62I 0.18 TCGA-VS-A8EL-01 1 40947449 40947449 G A ZFP69 Missense_Mutation p.D48N 0.23 tolerated(0.05) possibly_damaging(0.662) TCGA-VS-A8EL-01 1 41327016 41327016 C T CITED4 3'UTR 0.24 TCGA-VS-A8EL-01 1 50661450 50661450 G C ELAVL4 Missense_Mutation p.Q259H 0.25 tolerated(0.11) benign(0.082) TCGA-VS-A8EL-01 1 51755705 51755705 C T TTC39A Missense_Mutation p.E493K 0.33 deleterious(0) probably_damaging(0.947) TCGA-VS-A8EL-01 1 56962325 56962325 G C PPAP2B Missense_Mutation p.F278L 0.23 deleterious(0.01) possibly_damaging(0.78) TCGA-VS-A8EL-01 1 5923238 5923238 G C NPHP4 3'UTR 0.31 TCGA-VS-A8EL-01 1 61869860 61869860 C T NFIA Missense_Mutation p.A432V 0.09 deleterious(0) possibly_damaging(0.869) TCGA-VS-A8EL-01 1 62916916 62916916 C T USP1 3'UTR 0.24 TCGA-VS-A8EL-01 1 6527051 6527051 C T PLEKHG5 3'Flank 0.32 TCGA-VS-A8EL-01 1 78430819 78430819 G A FUBP1 Silent p.I190I 0.37 TCGA-VS-A8EL-01 1 82408826 82408826 G C LPHN2 Missense_Mutation p.D191H 0.28 deleterious(0) probably_damaging(0.996) TCGA-VS-A8EL-01 1 84650863 84650863 C T PRKACB Silent p.F186F 0.20 TCGA-VS-A8EL-01 20 25194014 25194014 G A ENTPD6 Missense_Mutation p.G190E 0.34 tolerated(0.73) possibly_damaging(0.533) TCGA-VS-A8EL-01 20 30610574 30610574 G A CCM2L Missense_Mutation p.E349K 0.18 tolerated(0.19) benign(0.003) TCGA-VS-A8EL-01 20 34828432 34828432 G A AAR2 Silent p.Q214Q 0.29 TCGA-VS-A8EL-01 20 39744076 39744076 C G TOP1 Silent p.L568L 0.15 TCGA-VS-A8EL-01 20 54823878 54823878 C G MC3R 5'UTR 0.28 TCGA-VS-A8EL-01 20 5931075 5931075 C G TRMT6 5'UTR 0.22 TCGA-VS-A8EL-01 20 60881368 60881368 C T ADRM1 Missense_Mutation p.A149V 0.24 tolerated(0.11) possibly_damaging(0.782) TCGA-VS-A8EL-01 20 61596995 61596995 C T SLC17A9 Silent p.L327L 0.11 TCGA-VS-A8EL-01 20 61878936 61878936 C G NKAIN4 Silent p.L155L 0.27 TCGA-VS-A8EL-01 21 34923825 34923825 C T SON Missense_Mutation p.S763F 0.23 possibly_damaging(0.485) TCGA-VS-A8EL-01 21 35474070 35474070 C G SLC5A3 3'UTR 0.21 TCGA-VS-A8EL-01 21 45522786 45522786 C T TRAPPC10 Silent p.P1158P 0.38 TCGA-VS-A8EL-01 21 45876816 45876816 C T LRRC3 Missense_Mutation p.H97Y 0.19 tolerated(0.08) benign(0.098) TCGA-VS-A8EL-01 22 16449340 16449340 G C OR11H1 Silent p.L155L 0.16 TCGA-VS-A8EL-01 22 17072472 17072472 G A CCT8L2 Silent p.I323I 0.15 TCGA-VS-A8EL-01 22 17984003 17984003 C T CECR2 Silent p.L234L 0.31 TCGA-VS-A8EL-01 22 18063818 18063818 C T SLC25A18 Silent p.L12L 0.16 TCGA-VS-A8EL-01 22 18894235 18894235 C G DGCR6 Missense_Mutation p.R90G 0.31 tolerated(0.11) benign(0.03) TCGA-VS-A8EL-01 22 23214165 23214165 G C IGLV4-3 Missense_Mutation p.E108Q 0.24 tolerated(0.07) benign(0.047) TCGA-VS-A8EL-01 22 23658230 23658230 G A BCR 3'UTR 0.30 TCGA-VS-A8EL-01 22 24179937 24179937 G A DERL3 Silent p.F144F 0.29 TCGA-VS-A8EL-01 22 29130552 29130552 G A CHEK2 Missense_Mutation p.S53F 0.34 tolerated_low_confidence(0.06) probably_damaging(0.992) TCGA-VS-A8EL-01 22 35480407 35480407 G A ISX Missense_Mutation p.R138Q 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 22 35480408 35480408 G A ISX Silent p.R138R 0.10 TCGA-VS-A8EL-01 22 42052981 42052981 C G XRCC6 Missense_Mutation p.P456A 0.19 tolerated(0.53) benign(0.004) TCGA-VS-A8EL-01 2 101188255 101188255 G A PDCL3 Missense_Mutation p.R191K 0.24 tolerated(0.89) benign(0.003) TCGA-VS-A8EL-01 2 102476285 102476285 G A MAP4K4 Missense_Mutation p.E555K 0.14 tolerated_low_confidence(0.36) benign(0.282) TCGA-VS-A8EL-01 2 10267009 10267009 C T RRM2 Missense_Mutation p.L253F 0.29 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-VS-A8EL-01 2 110375895 110375895 G C SOWAHC 3'UTR 0.15 TCGA-VS-A8EL-01 2 110922267 110922267 C T NPHP1 Missense_Mutation p.E257K 0.32 deleterious(0.02) benign(0.105) TCGA-VS-A8EL-01 2 112608406 112608406 C G ANAPC1 Missense_Mutation p.D533H 0.10 tolerated(0.07) probably_damaging(0.937) TCGA-VS-A8EL-01 2 120414034 120414034 G C PCDP1 Silent p.L837L 0.11 TCGA-VS-A8EL-01 2 128079784 128079784 A C MAP3K2 Missense_Mutation p.L295V 0.26 deleterious(0.02) benign(0.017) TCGA-VS-A8EL-01 2 141806668 141806668 C T LRP1B Missense_Mutation p.R559H 0.30 possibly_damaging(0.522) TCGA-VS-A8EL-01 2 151325644 151325644 C G RND3 3'UTR 0.14 TCGA-VS-A8EL-01 2 153496481 153496481 G A FMNL2 Missense_Mutation p.E986K 0.10 possibly_damaging(0.486) TCGA-VS-A8EL-01 2 164467418 164467418 C T FIGN Silent p.L308L 0.17 TCGA-VS-A8EL-01 2 167160552 167160552 G A SCN9A Intron 0.12 TCGA-VS-A8EL-01 2 16746979 16746979 G A FAM49A Nonsense_Mutation p.Q43* 0.26 TCGA-VS-A8EL-01 2 179408949 179408949 T G TTN Missense_Mutation p.I32003L 0.47 TCGA-VS-A8EL-01 2 202149751 202149751 C T CASP8 Nonsense_Mutation p.Q398* 0.54 TCGA-VS-A8EL-01 2 207175971 207175971 C G ZDBF2 Missense_Mutation p.S2240C 0.37 deleterious(0) possibly_damaging(0.7) TCGA-VS-A8EL-01 2 228882064 228882064 C T SPHKAP Missense_Mutation p.R1169Q 0.58 tolerated(0.25) benign(0.014) TCGA-VS-A8EL-01 2 239169594 239169594 G A PER2 Missense_Mutation p.P473S 0.11 deleterious(0.02) probably_damaging(0.987) TCGA-VS-A8EL-01 2 24222660 24222660 G A UBXN2A Missense_Mutation p.E235K 0.31 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 2 242680481 242680481 C T D2HGDH Missense_Mutation p.S109L 0.33 deleterious(0) benign(0.327) TCGA-VS-A8EL-01 2 26360166 26360166 C G RAB10 3'UTR 0.22 TCGA-VS-A8EL-01 2 26360185 26360185 C T RAB10 3'UTR 0.18 TCGA-VS-A8EL-01 2 27805181 27805181 G A C2orf16 Silent p.E1914E 0.24 TCGA-VS-A8EL-01 2 29073066 29073066 C T TRMT61B Silent p.%3D 0.28 TCGA-VS-A8EL-01 2 43927531 43927531 G A PLEKHH2 Missense_Mutation p.M478I 0.20 tolerated(0.07) benign(0.011) TCGA-VS-A8EL-01 2 69554171 69554171 C T GFPT1 Missense_Mutation p.E644K 0.41 tolerated(0.13) benign(0.013) TCGA-VS-A8EL-01 2 71216933 71216933 C T TEX261 Silent p.V106V 0.26 TCGA-VS-A8EL-01 2 72722577 72722577 G A EXOC6B Missense_Mutation p.S512L 0.18 tolerated(0.09) possibly_damaging(0.538) TCGA-VS-A8EL-01 2 74386220 74386220 G C MOB1A Missense_Mutation p.Q191E 0.12 tolerated(0.61) benign(0.015) TCGA-VS-A8EL-01 3 100058698 100058698 G C NIT2 Missense_Mutation p.E56Q 0.19 tolerated(0.31) benign(0.052) TCGA-VS-A8EL-01 3 101368829 101368829 C T ZBTB11 3'UTR 0.33 TCGA-VS-A8EL-01 3 111805239 111805239 C T C3orf52 5'UTR 0.21 TCGA-VS-A8EL-01 3 113753989 113753989 C G KIAA1407 Missense_Mutation p.E201Q 0.21 deleterious(0) probably_damaging(0.991) TCGA-VS-A8EL-01 3 119631583 119631583 A T GSK3B Missense_Mutation p.I228N 0.30 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 3 122003670 122003670 C G CASR Missense_Mutation p.Q967E 0.50 tolerated_low_confidence(1) benign(0) TCGA-VS-A8EL-01 3 132378639 132378639 G A UBA5 5'UTR 0.17 TCGA-VS-A8EL-01 3 134978062 134978062 C T EPHB1 3'UTR 0.30 TCGA-VS-A8EL-01 3 137729251 137729251 G A CLDN18 Missense_Mutation p.E62K 0.29 deleterious(0.01) possibly_damaging(0.801) TCGA-VS-A8EL-01 3 137800589 137800589 G A DZIP1L Silent p.L407L 0.31 TCGA-VS-A8EL-01 3 14200179 14200179 C G XPC Missense_Mutation p.D402H 0.32 deleterious(0.02) benign(0.017) TCGA-VS-A8EL-01 3 14547175 14547175 C T GRIP2 RNA 0.35 TCGA-VS-A8EL-01 3 156867109 156867109 C T CCNL1 Missense_Mutation p.R400Q 0.21 tolerated(0.17) benign(0) TCGA-VS-A8EL-01 3 19190088 19190088 C T KCNH8 5'UTR 0.18 TCGA-VS-A8EL-01 3 195063368 195063368 G C ACAP2 Missense_Mutation p.F120L 0.16 tolerated(0.19) benign(0.045) TCGA-VS-A8EL-01 3 195778847 195778847 G A TFRC Missense_Mutation p.S750F 0.37 deleterious(0.02) probably_damaging(0.954) TCGA-VS-A8EL-01 3 20179058 20179058 C T KAT2B Intron 0.26 TCGA-VS-A8EL-01 3 44364696 44364696 G C TOPAZ1 Missense_Mutation p.K1528N 0.17 deleterious(0) probably_damaging(0.934) TCGA-VS-A8EL-01 3 46753960 46753960 C G PRSS50 Missense_Mutation p.E312Q 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A8EL-01 3 48693284 48693284 C - CELSR3 Frame_Shift_Del p.F1543Sfs*16 0.24 TCGA-VS-A8EL-01 3 49008119 49008119 G A ARIH2 Missense_Mutation p.R251Q 0.18 tolerated(0.61) possibly_damaging(0.878) TCGA-VS-A8EL-01 3 49169939 49169939 G A LAMB2 Silent p.I78I 0.12 TCGA-VS-A8EL-01 3 50685446 50685446 C A MAPKAPK3 Missense_Mutation p.S373Y 0.13 deleterious(0.01) benign(0.396) TCGA-VS-A8EL-01 3 51624557 51624557 G A RAD54L2 Missense_Mutation p.E41K 0.21 tolerated_low_confidence(0.27) unknown(0) TCGA-VS-A8EL-01 3 57280238 57280238 C T APPL1 Silent p.Y203Y 0.35 TCGA-VS-A8EL-01 3 87276586 87276586 G A CHMP2B 5'UTR 0.30 TCGA-VS-A8EL-01 3 88205499 88205499 G A C3orf38 Missense_Mutation p.G235E 0.31 tolerated(0.05) benign(0.056) TCGA-VS-A8EL-01 3 93595974 93595974 G A PROS1 Missense_Mutation p.S569F 0.34 tolerated(0.15) benign(0.071) TCGA-VS-A8EL-01 3 97868922 97868922 C G OR5H14 Silent p.V231V 0.26 TCGA-VS-A8EL-01 3 98188932 98188932 C A OR5K1 Nonsense_Mutation p.S171* 0.27 TCGA-VS-A8EL-01 3 9955643 9955643 C T IL17RE Missense_Mutation p.R411W 0.20 deleterious(0) possibly_damaging(0.462) TCGA-VS-A8EL-01 4 103717233 103717233 C G UBE2D3 3'Flank 0.19 TCGA-VS-A8EL-01 4 107114779 107114779 G C TBCK Missense_Mutation p.F682L 0.27 deleterious(0) probably_damaging(0.925) TCGA-VS-A8EL-01 4 107114838 107114838 G A TBCK Missense_Mutation p.L663F 0.26 deleterious(0) probably_damaging(0.991) TCGA-VS-A8EL-01 4 113484321 113484321 C G C4orf21 Missense_Mutation p.L1516F 0.31 deleterious(0) probably_damaging(0.928) TCGA-VS-A8EL-01 4 126370319 126370319 C T FAT4 Silent p.F2716F 0.16 TCGA-VS-A8EL-01 4 175649838 175649838 C T GLRA3 Silent p.V93V 0.20 TCGA-VS-A8EL-01 4 177084374 177084374 G C WDR17 Missense_Mutation p.E998Q 0.16 tolerated(0.09) benign(0.267) TCGA-VS-A8EL-01 4 177084407 177084407 G A WDR17 Missense_Mutation p.E1009K 0.15 tolerated(0.13) benign(0.217) TCGA-VS-A8EL-01 4 17805358 17805358 C T DCAF16 Missense_Mutation p.R136K 0.19 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-VS-A8EL-01 4 183603056 183603056 G A TENM3 Missense_Mutation p.E642K 0.14 deleterious(0.01) possibly_damaging(0.636) TCGA-VS-A8EL-01 4 187521077 187521077 G A FAT1 Silent p.G4026G 0.22 TCGA-VS-A8EL-01 4 2251008 2251008 G A MXD4 3'UTR 0.32 TCGA-VS-A8EL-01 4 25004038 25004038 C T LGI2 3'UTR 0.42 TCGA-VS-A8EL-01 4 46053567 46053567 G A GABRG1 Silent p.L335L 0.17 TCGA-VS-A8EL-01 4 47574933 47574933 C G ATP10D Silent p.L1095L 0.22 TCGA-VS-A8EL-01 4 55594208 55594208 C T KIT Silent p.L637L 0.19 TCGA-VS-A8EL-01 4 57796224 57796224 G A REST Silent p.K400K 0.16 TCGA-VS-A8EL-01 4 57796525 57796525 G C REST Missense_Mutation p.E501Q 0.21 deleterious(0.03) possibly_damaging(0.529) TCGA-VS-A8EL-01 4 6302857 6302857 G A WFS1 Silent p.L445L 0.35 TCGA-VS-A8EL-01 4 69332455 69332455 G A TMPRSS11E Silent p.Q81Q 0.27 TCGA-VS-A8EL-01 4 73184356 73184356 C T ADAMTS3 Missense_Mutation p.G473E 0.21 deleterious(0) probably_damaging(0.998) TCGA-VS-A8EL-01 4 8237157 8237157 C T SH3TC1 Intron 0.23 TCGA-VS-A8EL-01 4 83581973 83581973 C T SCD5 Intron 0.21 TCGA-VS-A8EL-01 5 101570333 101570333 C G SLCO4C1 3'UTR 0.30 TCGA-VS-A8EL-01 5 114513323 114513323 G A TRIM36 Intron 0.14 TCGA-VS-A8EL-01 5 115780728 115780728 C T SEMA6A 3'UTR 0.16 TCGA-VS-A8EL-01 5 139852008 139852008 C G ANKHD1 Intron 0.26 TCGA-VS-A8EL-01 5 140537032 140537032 C T PCDHB17 Nonsense_Mutation p.Q486* 0.18 TCGA-VS-A8EL-01 5 140798657 140798657 G A PCDHGB7 Missense_Mutation p.D411N 0.21 deleterious(0.04) probably_damaging(1) TCGA-VS-A8EL-01 5 141017465 141017465 A G RELL2 5'UTR 0.20 TCGA-VS-A8EL-01 5 150518985 150518985 C T ANXA6 Missense_Mutation p.D45N 0.21 tolerated(0.16) benign(0.09) TCGA-VS-A8EL-01 5 150668029 150668029 T C SLC36A3 Missense_Mutation p.Y177C 0.28 deleterious(0.02) benign(0.073) TCGA-VS-A8EL-01 5 151784030 151784030 G A NMUR2 Silent p.F215F 0.26 TCGA-VS-A8EL-01 5 156890277 156890277 C T NIPAL4 Silent p.G133G 0.18 TCGA-VS-A8EL-01 5 172755532 172755532 C G STC2 5'UTR 0.21 TCGA-VS-A8EL-01 5 179201907 179201907 C T MAML1 3'UTR 0.19 TCGA-VS-A8EL-01 5 179264985 179264985 G C SQSTM1 3'UTR 0.31 TCGA-VS-A8EL-01 5 179674413 179674413 G A MAPK9 Intron 0.29 TCGA-VS-A8EL-01 5 180326325 180326325 C G BTNL8 Silent p.L5L 0.20 TCGA-VS-A8EL-01 5 33546275 33546275 C G ADAMTS12 Missense_Mutation p.E1445D 0.20 deleterious(0.01) possibly_damaging(0.559) TCGA-VS-A8EL-01 5 38427311 38427311 G A EGFLAM Missense_Mutation p.V671M 0.21 deleterious(0.03) probably_damaging(0.993) TCGA-VS-A8EL-01 5 41009477 41009477 C T MROH2B Missense_Mutation p.E1109K 0.16 tolerated(0.25) benign(0.064) TCGA-VS-A8EL-01 5 41312367 41312367 G A PLCXD3 3'UTR 0.30 TCGA-VS-A8EL-01 5 43246052 43246052 G A NIM1K Missense_Mutation p.E59K 0.12 tolerated(0.06) benign(0.056) TCGA-VS-A8EL-01 5 45396761 45396761 G A HCN1 Missense_Mutation p.H355Y 0.18 deleterious(0) benign(0.138) TCGA-VS-A8EL-01 5 45695949 45695949 C A HCN1 Missense_Mutation p.D83Y 0.18 deleterious(0) possibly_damaging(0.67) TCGA-VS-A8EL-01 5 5465140 5465140 C T KIAA0947 Missense_Mutation p.S1898L 0.15 tolerated(0.09) possibly_damaging(0.814) TCGA-VS-A8EL-01 5 5489311 5489311 G C KIAA0947 Missense_Mutation p.L2223F 0.15 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 5 59284538 59284538 C G PDE4D Missense_Mutation p.E17Q 0.23 tolerated_low_confidence(0.23) benign(0.008) TCGA-VS-A8EL-01 5 63513219 63513219 A T RNF180 Missense_Mutation p.H408L 0.22 tolerated(0.33) possibly_damaging(0.507) TCGA-VS-A8EL-01 5 93076928 93076928 C T POU5F2 Silent p.P114P 0.22 TCGA-VS-A8EL-01 6 100006384 100006384 G T CCNC Missense_Mutation p.A112D 0.34 deleterious(0) possibly_damaging(0.844) TCGA-VS-A8EL-01 6 100006385 100006385 C T CCNC Missense_Mutation p.A112T 0.34 tolerated(0.36) benign(0.007) TCGA-VS-A8EL-01 6 10400745 10400745 G A TFAP2A Missense_Mutation p.L321F 0.24 deleterious(0.02) benign(0.305) TCGA-VS-A8EL-01 6 127797532 127797532 C A SOGA3 Missense_Mutation p.D547Y 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-VS-A8EL-01 6 138745821 138745821 C T NHSL1 Silent p.Q1410Q 0.27 TCGA-VS-A8EL-01 6 150291190 150291190 G A ULBP1 Missense_Mutation p.A222T 0.24 deleterious(0.02) benign(0.066) TCGA-VS-A8EL-01 6 151671321 151671321 G A AKAP12 Missense_Mutation p.D599N 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-VS-A8EL-01 6 160206510 160206510 G C TCP1 Missense_Mutation p.I132M 0.43 tolerated(0.2) possibly_damaging(0.873) TCGA-VS-A8EL-01 6 25600921 25600921 C A LRRC16A Missense_Mutation p.L1167M 0.23 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-VS-A8EL-01 6 38840323 38840323 G T DNAH8 Silent p.T2117T 0.38 TCGA-VS-A8EL-01 6 83861376 83861376 C T DOPEY1 Nonsense_Mutation p.Q1968* 0.30 TCGA-VS-A8EL-01 7 100486437 100486437 G C UFSP1 3'UTR 0.19 TCGA-VS-A8EL-01 7 100682171 100682171 G A MUC17 Missense_Mutation p.E2492K 0.21 probably_damaging(0.931) TCGA-VS-A8EL-01 7 129821478 129821478 C G TMEM209 Missense_Mutation p.E369Q 0.20 deleterious(0.01) probably_damaging(0.932) TCGA-VS-A8EL-01 7 133580421 133580421 G C EXOC4 Missense_Mutation p.D602H 0.29 deleterious(0) probably_damaging(0.913) TCGA-VS-A8EL-01 7 133833021 133833021 G A LRGUK Missense_Mutation p.E207K 0.22 tolerated(0.47) benign(0.063) TCGA-VS-A8EL-01 7 150746156 150746156 G A ASIC3 Missense_Mutation p.E62K 0.17 tolerated(0.36) possibly_damaging(0.724) TCGA-VS-A8EL-01 7 150784044 150784044 G A AGAP3 Silent p.E72E 0.23 TCGA-VS-A8EL-01 7 151848065 151848065 C G KMT2C Missense_Mutation p.E4232Q 0.19 possibly_damaging(0.488) TCGA-VS-A8EL-01 7 152345800 152345800 G A XRCC2 Missense_Mutation p.S257L 0.31 tolerated(0.31) benign(0.038) TCGA-VS-A8EL-01 7 154143393 154143393 C T DPP6 Missense_Mutation p.S113L 0.23 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 7 158525405 158525405 C T ESYT2 3'UTR 0.15 TCGA-VS-A8EL-01 7 21912889 21912889 C A DNAH11 Intron 0.16 TCGA-VS-A8EL-01 7 21913035 21913035 C G DNAH11 Silent p.L4044L 0.15 TCGA-VS-A8EL-01 7 29519694 29519694 G A CHN2 Intron 0.15 TCGA-VS-A8EL-01 7 43664121 43664121 C T STK17A Nonsense_Mutation p.R309* 0.20 TCGA-VS-A8EL-01 7 48431731 48431731 C G ABCA13 Silent p.V3956V 0.19 TCGA-VS-A8EL-01 7 5104392 5104392 G A RBAK Silent p.G435G 0.22 TCGA-VS-A8EL-01 7 56148807 56148807 T G PHKG1 Silent p.A400A 0.25 TCGA-VS-A8EL-01 7 57509923 57509923 C T ZNF716 5'UTR 0.19 TCGA-VS-A8EL-01 7 73243620 73243620 G A CLDN4 5'UTR 0.35 TCGA-VS-A8EL-01 7 74114728 74114728 G C GTF2I Missense_Mutation p.E175D 0.20 tolerated(0.11) probably_damaging(0.957) TCGA-VS-A8EL-01 7 74114935 74114935 G A GTF2I Splice_Site p.X186_splice 0.09 TCGA-VS-A8EL-01 7 81381511 81381511 C T HGF Missense_Mutation p.E184K 0.27 tolerated(0.7) benign(0.18) TCGA-VS-A8EL-01 7 92098373 92098373 G A ERVW-1 Silent p.L441L 0.23 TCGA-VS-A8EL-01 7 98507690 98507690 C T TRRAP Silent p.L454L 0.31 TCGA-VS-A8EL-01 8 100712051 100712051 G T VPS13B Missense_Mutation p.Q2140H 0.12 deleterious(0) possibly_damaging(0.781) TCGA-VS-A8EL-01 8 105601166 105601166 G A LRP12 5'UTR 0.23 TCGA-VS-A8EL-01 8 12941067 12941067 C G DLC1 3'UTR 0.44 TCGA-VS-A8EL-01 8 12941151 12941151 C G DLC1 3'UTR 0.25 TCGA-VS-A8EL-01 8 133850017 133850017 C T PHF20L1 Missense_Mutation p.P718S 0.14 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 8 139180264 139180264 C G FAM135B Missense_Mutation p.D378H 0.14 deleterious(0.01) possibly_damaging(0.897) TCGA-VS-A8EL-01 8 143693574 143693574 G C ARC 3'UTR 0.33 TCGA-VS-A8EL-01 8 143831875 143831875 C A LYPD2 Silent p.T68T 0.18 TCGA-VS-A8EL-01 8 143960570 143960570 C G CYP11B1 Silent p.V91V 0.24 TCGA-VS-A8EL-01 8 145556914 145556919 CAGGCC G SCRT1 Frame_Shift_Del p.A326Lfs*129 0.16 TCGA-VS-A8EL-01 8 145639265 145639265 C T SLC39A4 Missense_Mutation p.D430N 0.19 tolerated(0.14) benign(0.009) TCGA-VS-A8EL-01 8 16853191 16853191 C T FGF20 Missense_Mutation p.M121I 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 8 30332338 30332338 C A RBPMS Missense_Mutation p.P37H 0.28 deleterious(0) possibly_damaging(0.835) TCGA-VS-A8EL-01 8 41472539 41472539 G C AGPAT6 Missense_Mutation p.G342A 0.13 deleterious(0.05) possibly_damaging(0.453) TCGA-VS-A8EL-01 8 42033498 42033498 C T PLAT 3'UTR 0.33 TCGA-VS-A8EL-01 8 48974066 48974066 G A UBE2V2 3'UTR 0.18 TCGA-VS-A8EL-01 8 56699281 56699281 C G TGS1 Missense_Mutation p.S275C 0.27 deleterious(0.03) possibly_damaging(0.778) TCGA-VS-A8EL-01 8 71033558 71033558 C T NCOA2 Silent p.K1454K 0.26 TCGA-VS-A8EL-01 8 90960111 90960111 C A NBN Nonsense_Mutation p.E619* 0.18 TCGA-VS-A8EL-01 8 91094854 91094854 G A CALB1 Silent p.D24D 0.22 TCGA-VS-A8EL-01 8 98735211 98735211 G A MTDH Silent p.E542E 0.25 TCGA-VS-A8EL-01 9 100136844 100136844 G A CCDC180 Silent p.Q1584Q 0.14 TCGA-VS-A8EL-01 9 101599335 101599335 C T GALNT12 Missense_Mutation p.R373C 0.30 tolerated(0.13) probably_damaging(0.999) TCGA-VS-A8EL-01 9 107591215 107591215 C A ABCA1 Silent p.L699L 0.21 TCGA-VS-A8EL-01 9 109687708 109687708 G C ZNF462 Missense_Mutation p.Q505H 0.27 benign(0.216) TCGA-VS-A8EL-01 9 111819574 111819574 C G TMEM245 Missense_Mutation p.G584A 0.16 tolerated(0.12) benign(0.406) TCGA-VS-A8EL-01 9 125239330 125239330 C T OR1J1 Silent p.L292L 0.22 TCGA-VS-A8EL-01 9 128086134 128086134 C G GAPVD1 Nonsense_Mutation p.S597* 0.27 TCGA-VS-A8EL-01 9 130825684 130825684 G C NAIF1 3'UTR 0.19 TCGA-VS-A8EL-01 9 130982325 130982325 C G DNM1 Silent p.A216A 0.26 TCGA-VS-A8EL-01 9 131708586 131708586 G A DOLK Missense_Mutation p.P333S 0.21 tolerated(0.94) benign(0.002) TCGA-VS-A8EL-01 9 131708612 131708612 G A DOLK Missense_Mutation p.S324F 0.20 deleterious(0.03) benign(0.068) TCGA-VS-A8EL-01 9 131709436 131709436 G A DOLK Silent p.L49L 0.24 TCGA-VS-A8EL-01 9 132402959 132402959 G A ASB6 Silent p.L52L 0.34 TCGA-VS-A8EL-01 9 133274986 133274986 G A AL354898.1 5'UTR 0.23 TCGA-VS-A8EL-01 9 135277478 135277478 C A TTF1 Missense_Mutation p.R244I 0.22 tolerated_low_confidence(0.15) benign(0.001) TCGA-VS-A8EL-01 9 137300955 137300955 G A RXRA Missense_Mutation p.M200I 0.21 deleterious(0) probably_damaging(0.997) TCGA-VS-A8EL-01 9 138845534 138845534 C G UBAC1 Missense_Mutation p.E109Q 0.31 deleterious(0.04) benign(0.322) TCGA-VS-A8EL-01 9 140110253 140110253 G A NDOR1 Silent p.Q477Q 0.29 TCGA-VS-A8EL-01 9 14857597 14857597 G C FREM1 Missense_Mutation p.S261C 0.11 deleterious(0) possibly_damaging(0.687) TCGA-VS-A8EL-01 9 19450460 19450460 C T ACER2 Silent p.I218I 0.20 TCGA-VS-A8EL-01 9 21441166 21441166 G A IFNA1 3'UTR 0.55 TCGA-VS-A8EL-01 9 23691251 23691251 G A ELAVL2 3'UTR 0.18 TCGA-VS-A8EL-01 9 32423397 32423397 C G ACO1 Missense_Mutation p.Q351E 0.49 tolerated(0.99) benign(0.003) TCGA-VS-A8EL-01 9 3288248 3288248 C T RFX3 Missense_Mutation p.G245E 0.19 deleterious(0) probably_damaging(1) TCGA-VS-A8EL-01 9 34728053 34728053 C T FAM205A Missense_Mutation p.E73K 0.24 deleterious(0.02) benign(0.142) TCGA-VS-A8EL-01 9 37531950 37531950 C T FBXO10 Missense_Mutation p.E509K 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A8EL-01 9 75420312 75420312 G A TMC1 Silent p.L527L 0.20 TCGA-VS-A8EL-01 9 78943053 78943053 G A PCSK5 Missense_Mutation p.E1463K 0.23 tolerated(0.13) benign(0.02) TCGA-VS-A8EL-01 9 82321803 82321803 G C TLE4 Missense_Mutation p.E309Q 0.26 tolerated(0.06) benign(0.097) TCGA-VS-A8EL-01 9 91618240 91618240 G T S1PR3 3'UTR 0.24 TCGA-VS-A8EL-01 X 105199960 105199960 C A NRK 3'UTR 0.47 TCGA-VS-A8EL-01 X 105450448 105450448 G A MUM1L1 Silent p.Q341Q 0.18 TCGA-VS-A8EL-01 X 105451488 105451488 G T MUM1L1 Missense_Mutation p.R688L 0.21 deleterious(0) probably_damaging(0.999) TCGA-VS-A8EL-01 X 110437625 110437625 G A PAK3 Silent p.Q399Q 0.23 TCGA-VS-A8EL-01 X 113997745 113997745 C G HTR2C Intron 0.15 TCGA-VS-A8EL-01 X 117480509 117480509 G A WDR44 Missense_Mutation p.E15K 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VS-A8EL-01 X 118222821 118222821 T C KIAA1210 Missense_Mutation p.D791G 0.08 tolerated(0.51) benign(0.08) TCGA-VS-A8EL-01 X 118717950 118717950 C T UBE2A 3'UTR 0.25 TCGA-VS-A8EL-01 X 120009230 120009230 C G CT47B1 Missense_Mutation p.E99Q 0.17 tolerated(0.16) possibly_damaging(0.87) TCGA-VS-A8EL-01 X 130409059 130409059 G A IGSF1 Missense_Mutation p.S1134F 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-VS-A8EL-01 X 136652289 136652289 G A ZIC3 3'UTR 0.35 TCGA-VS-A8EL-01 X 13682169 13682169 G A TCEANC 3'UTR 0.29 TCGA-VS-A8EL-01 X 149999726 149999726 C T CD99L2 Silent p.V36V 0.35 TCGA-VS-A8EL-01 X 153688910 153688910 C G PLXNA3 Missense_Mutation p.F129L 0.18 deleterious(0.03) benign(0.073) TCGA-VS-A8EL-01 X 153689798 153689798 C T PLXNA3 Silent p.F318F 0.23 TCGA-VS-A8EL-01 X 16847777 16847777 G A TXLNG Missense_Mutation p.E250K 0.29 deleterious(0.05) probably_damaging(0.95) TCGA-VS-A8EL-01 X 19371203 19371203 G A PDHA1 Missense_Mutation p.R179Q 0.19 deleterious(0) probably_damaging(0.968) TCGA-VS-A8EL-01 X 27840150 27840150 G A MAGEB10 Missense_Mutation p.E243K 0.21 deleterious(0) probably_damaging(0.939) TCGA-VS-A8EL-01 X 34962008 34962008 G A FAM47B Missense_Mutation p.E354K 0.05 deleterious(0.04) benign(0.234) TCGA-VS-A8EL-01 X 41332823 41332823 C T NYX Silent p.T39T 0.30 TCGA-VS-A8EL-01 X 47755309 47755309 G T ZNF81 Nonsense_Mutation p.E83* 0.22 TCGA-VS-A8EL-01 X 51238889 51238889 G A NUDT11 Silent p.H136H 0.19 TCGA-VS-A8EL-01 X 53674349 53674349 C G HUWE1 Missense_Mutation p.E105Q 0.26 probably_damaging(1) TCGA-VS-A8EL-01 X 63408266 63408266 G A AMER1 3'UTR 0.17 TCGA-VS-A8EL-01 X 63408280 63408280 C T AMER1 3'UTR 0.17 TCGA-VS-A8EL-01 X 68840782 68840782 T C EDA Intron 0.23 TCGA-VS-A8EL-01 X 70471410 70471410 G A ZMYM3 Missense_Mutation p.R237W 0.22 deleterious_low_confidence(0) benign(0.001) TCGA-VS-A8EL-01 X 76938961 76938961 G A ATRX Missense_Mutation p.S596F 0.15 possibly_damaging(0.613) TCGA-VS-A8EL-01 X 91133116 91133116 G A PCDH11X Missense_Mutation p.R626Q 0.29 tolerated(0.31) benign(0.023) TCGA-VS-A8Q8-01 10 112595793 112595793 G A RBM20 3'UTR 0.33 TCGA-VS-A8Q8-01 10 116045931 116045931 G C VWA2 Missense_Mutation p.D411H 0.39 deleterious(0.01) probably_damaging(0.963) TCGA-VS-A8Q8-01 10 118639406 118639406 C G ENO4 Missense_Mutation p.I227M 0.30 deleterious(0) possibly_damaging(0.506) TCGA-VS-A8Q8-01 10 17107611 17107611 G C CUBN Missense_Mutation p.S1012C 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-VS-A8Q8-01 10 50835801 50835801 T A CHAT Missense_Mutation p.W361R 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A8Q8-01 10 94223680 94223680 G T IDE Missense_Mutation p.H857N 0.19 tolerated(0.59) benign(0.366) TCGA-VS-A8Q8-01 11 118260546 118260546 C G UBE4A Silent p.V905V 0.47 TCGA-VS-A8Q8-01 11 31329334 31329334 C G DCDC1 Missense_Mutation p.D96H 0.28 deleterious(0) probably_damaging(0.984) TCGA-VS-A8Q8-01 11 34110954 34110954 C G CAPRIN1 Missense_Mutation p.S415C 0.25 deleterious(0) probably_damaging(0.937) TCGA-VS-A8Q8-01 11 46747584 46747584 G C F2 Silent p.L245L 0.09 TCGA-VS-A8Q8-01 11 59623436 59623436 G C TCN1 Missense_Mutation p.F281L 0.27 deleterious(0.03) possibly_damaging(0.467) TCGA-VS-A8Q8-01 11 66191675 66191675 C A NPAS4 Missense_Mutation p.F438L 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.675) TCGA-VS-A8Q8-01 12 109051145 109051145 C T CORO1C Missense_Mutation p.D229N 0.08 tolerated(0.29) benign(0.011) TCGA-VS-A8Q8-01 12 31255946 31255946 C T DDX11 Nonsense_Mutation p.Q817* 0.29 TCGA-VS-A8Q8-01 12 52845788 52845788 G A KRT6B Silent p.L25L 0.22 TCGA-VS-A8Q8-01 12 56215901 56215901 G A DNAJC14 Nonsense_Mutation p.Q657* 0.51 TCGA-VS-A8Q8-01 12 56532718 56532718 C T ESYT1 Missense_Mutation p.S848L 0.32 tolerated(0.53) benign(0.147) TCGA-VS-A8Q8-01 12 56743925 56743925 C T STAT2 Missense_Mutation p.E389K 0.20 deleterious(0.04) benign(0.048) TCGA-VS-A8Q8-01 12 57909850 57909850 C T MARS Intron 0.25 TCGA-VS-A8Q8-01 12 58142981 58142981 C G CDK4 Missense_Mutation p.G268A 0.11 tolerated(0.27) benign(0.032) TCGA-VS-A8Q8-01 12 95535243 95535243 G C FGD6 Missense_Mutation p.Q920E 0.50 tolerated(0.11) benign(0.141) TCGA-VS-A8Q8-01 13 21961738 21961738 C T ZDHHC20 Missense_Mutation p.D255N 0.40 deleterious(0) probably_damaging(0.984) TCGA-VS-A8Q8-01 14 23352558 23352558 C G REM2 Missense_Mutation p.S21C 0.33 deleterious_low_confidence(0) benign(0.319) TCGA-VS-A8Q8-01 14 64610657 64610657 G A SYNE2 Silent p.L5158L 0.39 TCGA-VS-A8Q8-01 15 51285649 51285649 G T AP4E1 Missense_Mutation p.D725Y 0.29 tolerated(0.07) possibly_damaging(0.615) TCGA-VS-A8Q8-01 15 75131018 75131018 C T ULK3 Silent p.L356L 0.37 TCGA-VS-A8Q8-01 15 75982433 75982433 C T CSPG4 Missense_Mutation p.G325R 0.40 deleterious(0) probably_damaging(1) TCGA-VS-A8Q8-01 15 96877807 96877807 C G NR2F2 Silent p.L315L 0.21 TCGA-VS-A8Q8-01 16 20963759 20963759 C A DNAH3 Silent p.L3728L 0.30 TCGA-VS-A8Q8-01 16 2906131 2906131 G A PRSS22 Missense_Mutation p.S78F 0.08 deleterious(0) probably_damaging(0.987) TCGA-VS-A8Q8-01 16 5125418 5125418 C G ALG1 Silent p.V140V 0.28 TCGA-VS-A8Q8-01 16 54965247 54965247 C T IRX5 Missense_Mutation p.S46L 0.24 deleterious(0.04) possibly_damaging(0.565) TCGA-VS-A8Q8-01 16 70935033 70935033 C T HYDIN Silent p.E2974E 0.27 TCGA-VS-A8Q8-01 17 18906872 18906872 G C FAM83G Missense_Mutation p.I161M 0.44 deleterious(0) possibly_damaging(0.859) TCGA-VS-A8Q8-01 17 2202437 2202437 C A SMG6 Missense_Mutation p.G537V 0.39 deleterious(0) possibly_damaging(0.821) TCGA-VS-A8Q8-01 17 28001030 28001030 G C SSH2 Intron 0.28 TCGA-VS-A8Q8-01 17 37455291 37455291 C T FBXL20 Missense_Mutation p.R94Q 0.23 deleterious(0.01) possibly_damaging(0.684) TCGA-VS-A8Q8-01 17 43893877 43893877 G A CRHR1 Missense_Mutation p.R57H 0.31 deleterious(0.02) possibly_damaging(0.553) TCGA-VS-A8Q8-01 17 7129111 7129111 G C DVL2 3'UTR 0.37 TCGA-VS-A8Q8-01 17 73621923 73621923 G A RECQL5 3'Flank 0.39 TCGA-VS-A8Q8-01 17 73622167 73622167 G A RECQL5 3'Flank 0.43 TCGA-VS-A8Q8-01 17 74561995 74561995 G C ST6GALNAC2 3'UTR 0.40 TCGA-VS-A8Q8-01 17 80043273 80043273 C T FASN Silent p.A1376A 0.46 TCGA-VS-A8Q8-01 18 10675273 10675273 C A PIEZO2 Missense_Mutation p.K2585N 0.25 tolerated(0.87) benign(0.005) TCGA-VS-A8Q8-01 18 13012989 13012989 C T CEP192 Missense_Mutation p.H162Y 0.24 tolerated(1) benign(0.086) TCGA-VS-A8Q8-01 18 22930950 22930950 G A ZNF521 Intron 0.54 TCGA-VS-A8Q8-01 18 32953911 32953911 G C ZNF396 Missense_Mutation p.H116D 0.37 tolerated(0.21) benign(0.036) TCGA-VS-A8Q8-01 18 7774161 7774161 G C PTPRM Missense_Mutation p.D30H 0.34 deleterious(0) probably_damaging(0.915) TCGA-VS-A8Q8-01 18 9255444 9255445 - A ANKRD12 Frame_Shift_Ins p.N729Kfs*5 0.26 TCGA-VS-A8Q8-01 19 11944583 11944583 C G ZNF440 3'UTR 0.56 TCGA-VS-A8Q8-01 19 18260032 18260032 G A MAST3 Silent p.P1142P 0.42 TCGA-VS-A8Q8-01 19 3008897 3008897 G A TLE2 Missense_Mutation p.S407F 0.49 tolerated(0.12) benign(0.306) TCGA-VS-A8Q8-01 19 38160123 38160123 C T ZNF781 Missense_Mutation p.M309I 0.29 tolerated(0.59) benign(0.019) TCGA-VS-A8Q8-01 19 38160630 38160630 C T ZNF781 Silent p.L140L 0.21 TCGA-VS-A8Q8-01 19 41066277 41066277 C T SPTBN4 Silent p.I1961I 0.23 TCGA-VS-A8Q8-01 19 49133647 49133647 C T SPHK2 3'UTR 0.07 TCGA-VS-A8Q8-01 19 7744110 7744110 C G C19orf59 3'UTR 0.67 TCGA-VS-A8Q8-01 1 110565904 110565904 C G AHCYL1 3'UTR 0.07 TCGA-VS-A8Q8-01 1 120254566 120254566 C G PHGDH 5'UTR 0.81 TCGA-VS-A8Q8-01 1 120254640 120254640 C G PHGDH 5'UTR 0.72 TCGA-VS-A8Q8-01 1 14149778 14149778 G A PRDM2 3'UTR 0.12 TCGA-VS-A8Q8-01 1 144852432 144852432 C T PDE4DIP Silent p.K2337K 0.25 TCGA-VS-A8Q8-01 1 151110276 151110276 C T SEMA6C Splice_Site p.X223_splice 0.16 TCGA-VS-A8Q8-01 1 154301440 154301440 C T ATP8B2 Intron 0.54 TCGA-VS-A8Q8-01 1 161206332 161206332 C T NR1I3 Silent p.L8L 0.26 TCGA-VS-A8Q8-01 1 16893824 16893824 C T NBPF1 Missense_Mutation p.E897K 0.07 tolerated(0.79) benign(0.025) TCGA-VS-A8Q8-01 1 2238460 2238460 C T SKI 3'UTR 0.59 TCGA-VS-A8Q8-01 1 25072022 25072022 C G CLIC4 5'UTR 0.05 TCGA-VS-A8Q8-01 20 60503471 60503471 C T CDH4 Silent p.T665T 0.12 TCGA-VS-A8Q8-01 22 22385791 22385791 G C IGLV4-69 Missense_Mutation p.E94Q 0.29 tolerated(0.14) benign(0.009) TCGA-VS-A8Q8-01 22 31671196 31671196 C G LIMK2 Silent p.L537L 0.08 TCGA-VS-A8Q8-01 22 32014207 32014207 G A SFI1 Missense_Mutation p.E1207K 0.33 deleterious(0.02) possibly_damaging(0.491) TCGA-VS-A8Q8-01 22 38875670 38875670 G A KDELR3 Missense_Mutation p.E89K 0.25 tolerated(0.17) benign(0.022) TCGA-VS-A8Q8-01 22 40719830 40719830 G A TNRC6B 3'UTR 0.35 TCGA-VS-A8Q8-01 22 40720123 40720123 G A TNRC6B 3'UTR 0.32 TCGA-VS-A8Q8-01 22 46632645 46632645 G A PPARA 3'UTR 0.42 TCGA-VS-A8Q8-01 22 50901057 50901057 G C SBF1 Missense_Mutation p.F686L 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A8Q8-01 2 101554236 101554236 G A NPAS2 Missense_Mutation p.A99T 0.19 deleterious(0.04) probably_damaging(0.919) TCGA-VS-A8Q8-01 2 1320072 1320072 G A SNTG2 Silent p.K471K 0.10 TCGA-VS-A8Q8-01 2 149883158 149883158 A G KIF5C 3'UTR 0.39 TCGA-VS-A8Q8-01 2 169948373 169948373 C T DHRS9 Missense_Mutation p.P216S 0.29 tolerated(1) benign(0.003) TCGA-VS-A8Q8-01 2 203831821 203831821 G A CARF Missense_Mutation p.R318Q 0.38 deleterious(0.01) possibly_damaging(0.744) TCGA-VS-A8Q8-01 2 208631962 208631963 - A FZD5 Frame_Shift_Ins p.W501Lfs*98 0.23 TCGA-VS-A8Q8-01 2 219888028 219888028 C T CCDC108 Silent p.S907S 0.29 TCGA-VS-A8Q8-01 2 241465747 241465747 C G ANKMY1 Missense_Mutation p.E268Q 0.28 tolerated(0.26) benign(0.196) TCGA-VS-A8Q8-01 2 241465760 241465760 C T ANKMY1 Missense_Mutation p.M263I 0.30 deleterious(0.01) benign(0.403) TCGA-VS-A8Q8-01 2 27255832 27255832 C T TMEM214 5'UTR 0.31 TCGA-VS-A8Q8-01 2 31571175 31571175 C T XDH Missense_Mutation p.G1036R 0.37 deleterious(0) probably_damaging(0.968) TCGA-VS-A8Q8-01 2 40341813 40341813 C G SLC8A1 3'Flank 0.45 TCGA-VS-A8Q8-01 2 55209684 55209684 G A RTN4 Silent p.L1109L 0.11 TCGA-VS-A8Q8-01 2 60684821 60684821 C T BCL11A 3'UTR 0.12 TCGA-VS-A8Q8-01 2 60684823 60684823 T C BCL11A 3'UTR 0.14 TCGA-VS-A8Q8-01 2 72692007 72692007 C T EXOC6B Intron 0.23 TCGA-VS-A8Q8-01 2 74076602 74076602 C T STAMBP Silent p.L285L 0.47 TCGA-VS-A8Q8-01 2 86440430 86440430 T A MRPL35 3'UTR 0.26 TCGA-VS-A8Q8-01 3 113377394 113377394 T C KIAA2018 Silent p.L1045L 0.07 TCGA-VS-A8Q8-01 3 114069627 114069627 G A ZBTB20 Missense_Mutation p.P433L 0.25 deleterious(0) probably_damaging(0.982) TCGA-VS-A8Q8-01 3 138724466 138724466 G C PRR23A Missense_Mutation p.F215L 0.17 tolerated(0.65) benign(0) TCGA-VS-A8Q8-01 3 142778018 142778018 G T U2SURP 3'UTR 0.23 TCGA-VS-A8Q8-01 3 155199496 155199496 G A PLCH1 Missense_Mutation p.S1448L 0.26 tolerated_low_confidence(0.08) benign(0.199) TCGA-VS-A8Q8-01 3 172165728 172165728 C T GHSR Missense_Mutation p.R159Q 0.16 deleterious(0) probably_damaging(0.975) TCGA-VS-A8Q8-01 3 184064810 184064810 C T CLCN2 Splice_Site p.X806_splice 0.16 TCGA-VS-A8Q8-01 3 195447900 195447900 G A MUC20 Missense_Mutation p.A8T 0.08 deleterious_low_confidence(0.04) probably_damaging(0.957) TCGA-VS-A8Q8-01 3 196229767 196229767 G C RNF168 Missense_Mutation p.S93C 0.30 tolerated(0.14) benign(0.002) TCGA-VS-A8Q8-01 3 37343673 37343673 C T GOLGA4 Intron 0.80 TCGA-VS-A8Q8-01 3 52696196 52696196 C G PBRM1 Missense_Mutation p.D161H 0.36 deleterious(0.01) probably_damaging(0.934) TCGA-VS-A8Q8-01 4 156269019 156269019 C T MAP9 Silent p.Q620Q 0.56 TCGA-VS-A8Q8-01 5 137589790 137589790 G A GFRA3 Missense_Mutation p.A282V 0.09 tolerated(0.19) benign(0.019) TCGA-VS-A8Q8-01 5 150138603 150138603 G A DCTN4 5'Flank 0.29 TCGA-VS-A8Q8-01 5 178310206 178310206 C A ZNF354B Missense_Mutation p.F251L 0.36 deleterious(0) possibly_damaging(0.814) TCGA-VS-A8Q8-01 5 41313038 41313038 C T PLCXD3 3'UTR 0.44 TCGA-VS-A8Q8-01 5 61604144 61604144 G A KIF2A Intron 0.33 TCGA-VS-A8Q8-01 5 86514128 86514128 C T AC008394.1 Silent p.L31L 0.33 TCGA-VS-A8Q8-01 5 86674274 86674274 G A RASA1 Missense_Mutation p.M802I 0.27 deleterious(0) probably_damaging(0.917) TCGA-VS-A8Q8-01 6 31324109 31324109 C A HLA-B Nonsense_Mutation p.E152* 0.24 TCGA-VS-A8Q8-01 6 33133535 33133535 C T COL11A2 Missense_Mutation p.R1428H 0.29 unknown(0) TCGA-VS-A8Q8-01 6 96662390 96662390 C A FUT9 3'UTR 0.27 TCGA-VS-A8Q8-01 7 111540449 111540449 G A DOCK4 Silent p.F487F 0.05 TCGA-VS-A8Q8-01 7 142168398 142168398 G C TRBV5-4 Missense_Mutation p.L109V 0.06 deleterious(0) probably_damaging(0.967) TCGA-VS-A8Q8-01 7 142639593 142639593 C T KEL Silent p.R655R 0.07 TCGA-VS-A8Q8-01 7 151927069 151927069 C T KMT2C Missense_Mutation p.G972E 0.10 probably_damaging(1) TCGA-VS-A8Q8-01 7 2567586 2567587 AG - LFNG 3'UTR 0.43 TCGA-VS-A8Q8-01 7 77552164 77552164 C T PHTF2 Intron 0.33 TCGA-VS-A8Q8-01 7 99123731 99123731 C T ZKSCAN5 Silent p.L356L 0.33 TCGA-VS-A8Q8-01 8 143546292 143546292 G A BAI1 Missense_Mutation p.E245K 0.88 deleterious(0.01) benign(0.292) TCGA-VS-A8Q8-01 9 116093377 116093377 C G WDR31 Missense_Mutation p.E46Q 0.17 tolerated(0.06) possibly_damaging(0.588) TCGA-VS-A8Q8-01 9 125281527 125281527 G A OR1J4 Silent p.L36L 0.31 TCGA-VS-A8Q8-01 9 130457403 130457403 G A STXBP1 3'Flank 0.21 TCGA-VS-A8Q8-01 9 135973283 135973283 C G RALGDS 3'UTR 0.12 TCGA-VS-A8Q8-01 9 139616504 139616504 G A FAM69B Intron 0.21 TCGA-VS-A8Q8-01 9 91618340 91618340 G A S1PR3 3'UTR 0.27 TCGA-VS-A8Q8-01 X 100537354 100537354 C A TAF7L Nonsense_Mutation p.E209* 0.52 TCGA-VS-A8Q8-01 X 114142080 114142080 C T HTR2C 3'UTR 0.21 TCGA-VS-A8Q8-01 X 134426320 134426320 G C ZNF75D Missense_Mutation p.A164G 0.38 deleterious(0.02) benign(0.003) TCGA-VS-A8Q8-01 X 138713659 138713659 C A MCF2 Silent p.L121L 0.56 TCGA-VS-A8Q8-01 X 153225327 153225327 G T HCFC1 Missense_Mutation p.T457N 0.44 tolerated(0.11) benign(0.033) TCGA-VS-A8Q8-01 X 154736787 154736787 A T TMLHE Missense_Mutation p.V256E 0.19 deleterious(0) probably_damaging(0.992) TCGA-VS-A8Q8-01 X 19410551 19410551 C T MAP3K15 Missense_Mutation p.M745I 0.16 tolerated(0.12) benign(0.02) TCGA-VS-A8Q8-01 X 22117208 22117208 G C PHEX Missense_Mutation p.V340L 0.10 deleterious(0.01) benign(0.111) TCGA-VS-A8Q8-01 X 48772530 48772530 G A PIM2 Missense_Mutation p.P121L 0.24 tolerated(0.32) benign(0.149) TCGA-VS-A8Q8-01 X 53643954 53643954 C A HUWE1 Missense_Mutation p.R645M 0.15 probably_damaging(0.999) TCGA-VS-A8Q9-01 10 100155207 100155207 G A PYROXD2 Missense_Mutation p.R210C 0.37 tolerated(0.18) benign(0.014) TCGA-VS-A8Q9-01 10 116049077 116049077 C G VWA2 Missense_Mutation p.P651A 0.25 tolerated(0.05) probably_damaging(1) TCGA-VS-A8Q9-01 10 69933891 69933891 C T MYPN Missense_Mutation p.P681L 0.29 tolerated(0.06) benign(0.013) TCGA-VS-A8Q9-01 10 70715896 70715896 G C DDX21 5'UTR 0.30 TCGA-VS-A8Q9-01 10 95557385 95557386 AA - LGI1 Frame_Shift_Del p.Q500Rfs*3 0.24 TCGA-VS-A8Q9-01 11 47435366 47435366 T A SLC39A13 Intron 0.75 TCGA-VS-A8Q9-01 11 9802061 9802061 G C SBF2 Silent p.L1818L 0.54 TCGA-VS-A8Q9-01 12 31256857 31256857 G A DDX11 Missense_Mutation p.D935N 0.18 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-VS-A8Q9-01 12 51065124 51065124 G A DIP2B Missense_Mutation p.G195R 0.31 tolerated(0.2) benign(0.032) TCGA-VS-A8Q9-01 12 54966512 54966512 G A PDE1B Missense_Mutation p.R241H 0.37 tolerated(0.63) possibly_damaging(0.898) TCGA-VS-A8Q9-01 13 61984804 61984804 C T PCDH20 3'UTR 0.38 TCGA-VS-A8Q9-01 13 77695616 77695616 C G MYCBP2 Missense_Mutation p.D2640H 0.28 possibly_damaging(0.723) TCGA-VS-A8Q9-01 13 84452102 84452102 G A SLITRK1 3'UTR 0.36 TCGA-VS-A8Q9-01 14 106208440 106208440 G A IGHG1 Missense_Mutation p.P154S 0.38 tolerated(0.14) benign(0.028) TCGA-VS-A8Q9-01 14 22279917 22279917 G T TRAV9-1 Missense_Mutation p.D36Y 0.33 deleterious(0) possibly_damaging(0.588) TCGA-VS-A8Q9-01 15 50535141 50535141 G A HDC Silent p.L435L 0.30 TCGA-VS-A8Q9-01 15 72072884 72072884 A C THSD4 3'UTR 0.16 TCGA-VS-A8Q9-01 15 75980508 75980508 C T CSPG4 Silent p.L966L 0.13 TCGA-VS-A8Q9-01 16 2114343 2114343 G A TSC2 Missense_Mutation p.R505Q 0.43 deleterious(0) possibly_damaging(0.765) TCGA-VS-A8Q9-01 16 48174678 48174678 G A ABCC12 Missense_Mutation p.R193W 0.26 deleterious(0.01) probably_damaging(1) TCGA-VS-A8Q9-01 16 50707293 50707293 G A SNX20 3'UTR 0.29 TCGA-VS-A8Q9-01 17 36484571 36484571 C T GPR179 Silent p.S1627S 0.31 TCGA-VS-A8Q9-01 17 37872107 37872107 C T ERBB2 Silent p.F476F 0.45 TCGA-VS-A8Q9-01 17 39680178 39680178 C T KRT19 Silent p.A340A 0.35 TCGA-VS-A8Q9-01 17 40362441 40362441 G C STAT5B Silent p.L585L 0.34 TCGA-VS-A8Q9-01 17 76187119 76187119 C T AFMID Silent p.T44T 0.32 TCGA-VS-A8Q9-01 18 20979582 20979582 G A TMEM241 Missense_Mutation p.S76L 0.44 deleterious(0) benign(0.267) TCGA-VS-A8Q9-01 18 57567461 57567484 CCAGCAGGTACCGACCCGCTGGGG - PMAIP1 Splice_Site p.X19_splice 0.54 TCGA-VS-A8Q9-01 19 11143977 11143977 G A SMARCA4 Silent p.A1186A 0.18 TCGA-VS-A8Q9-01 19 11577004 11577004 G A ELAVL3 Nonsense_Mutation p.Q106* 0.14 TCGA-VS-A8Q9-01 19 11577011 11577011 G A ELAVL3 Silent p.L103L 0.14 TCGA-VS-A8Q9-01 19 1207090 1207091 - CA STK11 Frame_Shift_Ins p.Y60Sfs*5 0.36 TCGA-VS-A8Q9-01 19 18672870 18672870 G A KXD1 Missense_Mutation p.D2N 0.39 deleterious_low_confidence(0) benign(0.227) TCGA-VS-A8Q9-01 1 155920652 155920652 C T ARHGEF2 Missense_Mutation p.D891N 0.31 tolerated_low_confidence(0.08) probably_damaging(0.99) TCGA-VS-A8Q9-01 1 157718717 157718717 G A FCRL2 Silent p.T447T 0.41 TCGA-VS-A8Q9-01 1 17405893 17405893 G A PADI2 Silent p.Y392Y 0.42 TCGA-VS-A8Q9-01 1 197390830 197390830 T C CRB1 Silent p.G624G 0.31 TCGA-VS-A8Q9-01 1 33747387 33747387 C T ZNF362 Missense_Mutation p.L295F 0.15 deleterious(0) probably_damaging(0.998) TCGA-VS-A8Q9-01 1 45807214 45807214 C T TOE1 Silent p.L102L 0.33 TCGA-VS-A8Q9-01 20 2730313 2730315 ACG GTGGT EBF4 Frame_Shift_Ins p.T265Vfs*52 0.55 TCGA-VS-A8Q9-01 20 826561 826561 T G FAM110A 3'UTR 0.43 TCGA-VS-A8Q9-01 21 46012130 46012130 G A KRTAP10-6 Missense_Mutation p.S79L 0.37 deleterious(0.01) unknown(0) TCGA-VS-A8Q9-01 22 20342085 20342085 C T XXbac-B33L19.6 5'Flank 0.23 TCGA-VS-A8Q9-01 22 29091707 29091707 A T CHEK2 Missense_Mutation p.L460H 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A8Q9-01 22 42779608 42779608 C T NFAM1 3'UTR 0.50 TCGA-VS-A8Q9-01 2 130865635 130865635 G A POTEF Missense_Mutation p.S358F 0.27 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-VS-A8Q9-01 2 162799320 162799320 G A SLC4A10 Silent p.P672P 0.32 TCGA-VS-A8Q9-01 2 228882759 228882759 G A SPHKAP Silent p.V937V 0.35 TCGA-VS-A8Q9-01 2 31457530 31457530 C G EHD3 Missense_Mutation p.P15A 0.33 tolerated(0.29) benign(0.005) TCGA-VS-A8Q9-01 2 36776359 36776359 C T CRIM1 3'UTR 0.38 TCGA-VS-A8Q9-01 2 62449521 62449521 G A B3GNT2 Missense_Mutation p.E56K 0.28 tolerated(0.96) benign(0) TCGA-VS-A8Q9-01 2 65593865 65593865 C T SPRED2 Intron 0.49 TCGA-VS-A8Q9-01 3 147131263 147131263 G A ZIC1 Silent p.S423S 0.19 TCGA-VS-A8Q9-01 3 180466033 180466033 C T CCDC39 Splice_Site p.X12_splice 0.21 TCGA-VS-A8Q9-01 3 24159756 24159756 G A THRB 3'UTR 0.45 TCGA-VS-A8Q9-01 3 37560830 37560830 C T ITGA9 Silent p.V407V 0.23 TCGA-VS-A8Q9-01 3 44611430 44611430 G A ZKSCAN7 Missense_Mutation p.M276I 0.55 tolerated(0.19) benign(0.003) TCGA-VS-A8Q9-01 3 52830591 52830591 G A ITIH3 Missense_Mutation p.R70H 0.64 tolerated(0.12) benign(0.052) TCGA-VS-A8Q9-01 4 152097804 152097804 G A SH3D19 5'UTR 0.31 TCGA-VS-A8Q9-01 4 187540980 187540987 TGCTCAGC - FAT1 Frame_Shift_Del p.K2251Nfs*5 0.19 TCGA-VS-A8Q9-01 4 76711886 76711886 C T USO1 Silent p.F394F 0.32 TCGA-VS-A8Q9-01 4 951822 951822 C T TMEM175 Silent p.F351F 0.35 TCGA-VS-A8Q9-01 5 127523673 127523673 G A SLC12A2 3'UTR 0.12 TCGA-VS-A8Q9-01 5 42799809 42799809 C T CCDC152 Missense_Mutation p.R231C 0.36 deleterious(0.01) benign(0.035) TCGA-VS-A8Q9-01 5 72206337 72206337 G A TNPO1 3'UTR 0.25 TCGA-VS-A8Q9-01 6 147887662 147887662 G A SAMD5 3'UTR 0.23 TCGA-VS-A8Q9-01 6 27369182 27369182 A T ZNF391 Missense_Mutation p.S345C 0.37 tolerated(0.07) probably_damaging(0.99) TCGA-VS-A8Q9-01 6 30624823 30624823 C T DHX16 Missense_Mutation p.G685D 0.38 deleterious(0) unknown(0) TCGA-VS-A8Q9-01 7 102279613 102279613 G A UPK3BL Silent p.P173P 0.12 TCGA-VS-A8Q9-01 7 5347836 5347836 C T TNRC18 Silent p.K2936K 0.35 TCGA-VS-A8Q9-01 8 145659506 145659506 C T TONSL Missense_Mutation p.R1081Q 0.35 tolerated(0.06) benign(0.096) TCGA-VS-A8Q9-01 8 145749372 145749372 C T LRRC14 3'UTR 0.46 TCGA-VS-A8Q9-01 9 12775897 12775897 C T LURAP1L Silent p.S61S 0.33 TCGA-VS-A8Q9-01 9 136333682 136333682 C T CACFD1 Intron 0.68 TCGA-VS-A8Q9-01 X 123234725 123234726 - T STAG2 3'UTR 0.10 TCGA-VS-A8Q9-01 X 128709898 128709898 C T OCRL Missense_Mutation p.R580W 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-VS-A8Q9-01 X 149898665 149898665 C A MTMR1 Missense_Mutation p.P206T 0.31 deleterious(0) probably_damaging(0.975) TCGA-VS-A8Q9-01 X 153695995 153695995 C T PLXNA3 Silent p.C1183C 0.37 TCGA-VS-A8Q9-01 X 18797153 18797153 C T PPEF1 Missense_Mutation p.P195L 0.40 deleterious(0.01) possibly_damaging(0.473) TCGA-VS-A8Q9-01 X 38037572 38037572 G A SRPX Silent p.D41D 0.33 TCGA-VS-A8Q9-01 X 52842232 52842232 G T XAGE5 Missense_Mutation p.Q47H 0.35 deleterious(0.03) probably_damaging(0.954) TCGA-VS-A8Q9-01 X 66764871 66764871 G - AR 5'UTR 0.24 TCGA-VS-A8QA-01 10 13699233 13699233 G A FRMD4A Missense_Mutation p.R786W 0.44 deleterious(0) possibly_damaging(0.826) TCGA-VS-A8QA-01 10 22024073 22024073 C G MLLT10 Nonsense_Mutation p.S955* 0.32 TCGA-VS-A8QA-01 10 34573073 34573073 C G PARD3 Missense_Mutation p.E1059Q 0.38 deleterious(0) probably_damaging(0.995) TCGA-VS-A8QA-01 10 55663107 55663107 C T PCDH15 Missense_Mutation p.E1133K 0.27 deleterious(0.04) probably_damaging(0.95) TCGA-VS-A8QA-01 10 99019211 99019211 G A ARHGAP19 Missense_Mutation p.S263L 0.38 deleterious(0) probably_damaging(0.988) TCGA-VS-A8QA-01 11 102595508 102595508 C G MMP8 Missense_Mutation p.E27Q 0.40 tolerated(0.05) possibly_damaging(0.776) TCGA-VS-A8QA-01 11 118851934 118851934 C G FOXR1 Silent p.L289L 0.41 TCGA-VS-A8QA-01 11 123065710 123065710 C T CLMP 5'UTR 0.41 TCGA-VS-A8QA-01 11 124481507 124481507 G A PANX3 Missense_Mutation p.D19N 0.33 deleterious(0) benign(0.224) TCGA-VS-A8QA-01 11 18309092 18309092 C A HPS5 Nonsense_Mutation p.E903* 0.40 TCGA-VS-A8QA-01 11 36599320 36599320 C G RAG1 3'UTR 0.35 TCGA-VS-A8QA-01 11 3687461 3687461 C T CHRNA10 Missense_Mutation p.R410Q 0.43 tolerated(0.17) benign(0.043) TCGA-VS-A8QA-01 11 57003305 57003305 G A APLNR 3'UTR 0.26 TCGA-VS-A8QA-01 11 592562 592562 C T PHRF1 Missense_Mutation p.P170S 0.34 deleterious(0) possibly_damaging(0.598) TCGA-VS-A8QA-01 11 59575253 59575253 C T MRPL16 Missense_Mutation p.R64K 0.44 tolerated(0.75) benign(0.024) TCGA-VS-A8QA-01 11 64375369 64375369 C T NRXN2 Missense_Mutation p.E1480K 0.30 tolerated_low_confidence(0.66) benign(0.029) TCGA-VS-A8QA-01 11 64851122 64851122 G A CDCA5 Silent p.I40I 0.33 TCGA-VS-A8QA-01 11 65387290 65387290 C T PCNXL3 Missense_Mutation p.A632V 0.29 tolerated(0.14) benign(0.074) TCGA-VS-A8QA-01 11 73076769 73076769 C T ARHGEF17 Silent p.I1924I 0.39 TCGA-VS-A8QA-01 11 76867757 76867757 C T MYO7A Silent p.F174F 0.47 TCGA-VS-A8QA-01 11 803349 803349 C T PIDD Silent p.V178V 0.46 TCGA-VS-A8QA-01 12 103352294 103352294 C T ASCL1 Missense_Mutation p.S91L 0.33 deleterious(0.01) benign(0.124) TCGA-VS-A8QA-01 12 103354257 103354257 C T ASCL1 3'UTR 0.44 TCGA-VS-A8QA-01 12 20782869 20782869 C T PDE3A Missense_Mutation p.S523L 0.38 tolerated(0.65) benign(0.071) TCGA-VS-A8QA-01 12 50561081 50561081 C T CERS5 5'UTR 0.57 TCGA-VS-A8QA-01 12 52652134 52652134 G A KRT121P RNA 0.48 TCGA-VS-A8QA-01 12 6030375 6030375 G A ANO2 Missense_Mutation p.S118L 0.31 tolerated(0.07) benign(0.079) TCGA-VS-A8QA-01 12 65720640 65720640 C T MSRB3 Silent p.V44V 0.31 TCGA-VS-A8QA-01 12 7363854 7363854 C T PEX5 3'Flank 0.40 TCGA-VS-A8QA-01 12 86374104 86374104 C T MGAT4C Missense_Mutation p.E134K 0.30 tolerated(0.09) benign(0.444) TCGA-VS-A8QA-01 12 9094164 9094164 G A M6PR 3'UTR 0.50 TCGA-VS-A8QA-01 13 45602031 45602031 G C GPALPP1 Missense_Mutation p.D306H 0.47 deleterious(0) probably_damaging(1) TCGA-VS-A8QA-01 13 46287667 46287667 G A SPERT Silent p.Q169Q 0.37 TCGA-VS-A8QA-01 13 73649896 73649896 C A KLF5 Silent p.R416R 0.37 TCGA-VS-A8QA-01 13 73649905 73649905 G A KLF5 Missense_Mutation p.E419K 0.39 deleterious(0) probably_damaging(0.982) TCGA-VS-A8QA-01 13 74420000 74420000 C T KLF12 Missense_Mutation p.V212M 0.31 deleterious(0.03) benign(0.025) TCGA-VS-A8QA-01 13 88328670 88328670 C T SLITRK5 Missense_Mutation p.R343C 0.56 deleterious(0) possibly_damaging(0.856) TCGA-VS-A8QA-01 14 104199623 104199623 A G ZFYVE21 3'UTR 0.41 TCGA-VS-A8QA-01 14 50796840 50796842 CTT - CDKL1 In_Frame_Del p.K343del 0.43 TCGA-VS-A8QA-01 14 66965081 66965081 G A LINC00238 RNA 0.41 TCGA-VS-A8QA-01 14 75537786 75537786 G A ZC2HC1C Silent p.P170P 0.47 TCGA-VS-A8QA-01 14 95109874 95109874 G A SERPINA13P RNA 0.41 TCGA-VS-A8QA-01 15 100256897 100256897 C T DKFZP779J2370 Missense_Mutation p.D36N 0.38 unknown(0) TCGA-VS-A8QA-01 15 20488793 20488793 C T CHEK2P2 RNA 0.15 TCGA-VS-A8QA-01 15 29346241 29346241 C T APBA2 Missense_Mutation p.R52W 0.40 tolerated_low_confidence(0.06) possibly_damaging(0.656) TCGA-VS-A8QA-01 15 40384071 40384071 G A BMF Missense_Mutation p.R158C 0.50 deleterious(0.01) possibly_damaging(0.832) TCGA-VS-A8QA-01 15 41276104 41276104 C T INO80 Missense_Mutation p.E1365K 0.41 deleterious(0.03) benign(0.004) TCGA-VS-A8QA-01 15 41730563 41730563 G A RTF1 Silent p.E81E 0.30 TCGA-VS-A8QA-01 15 45365949 45365949 G A SORD 3'UTR 0.40 TCGA-VS-A8QA-01 15 50891457 50891457 G A TRPM7 Missense_Mutation p.L1009F 0.43 deleterious(0) possibly_damaging(0.826) TCGA-VS-A8QA-01 15 54306614 54306614 C G UNC13C Nonsense_Mutation p.S505* 0.36 TCGA-VS-A8QA-01 15 65946299 65946299 C T SLC24A1 Missense_Mutation p.S1061L 0.48 benign(0.127) TCGA-VS-A8QA-01 15 70346958 70346958 C T TLE3 Missense_Mutation p.E552K 0.68 deleterious(0.01) probably_damaging(1) TCGA-VS-A8QA-01 15 73076292 73076292 C T ADPGK 5'Flank 0.48 TCGA-VS-A8QA-01 15 79065434 79065434 C T ADAMTS7 Missense_Mutation p.E708K 0.73 deleterious(0) probably_damaging(0.992) TCGA-VS-A8QA-01 15 89834874 89834874 C T FANCI Silent p.L641L 0.37 TCGA-VS-A8QA-01 15 90806337 90806337 A G TTLL13 3'Flank 0.28 TCGA-VS-A8QA-01 16 15125729 15125729 G C PDXDC1 Missense_Mutation p.D513H 0.24 deleterious(0) benign(0.031) TCGA-VS-A8QA-01 16 16297425 16297425 C T ABCC6 Missense_Mutation p.M280I 0.53 tolerated(0.33) benign(0) TCGA-VS-A8QA-01 16 21709188 21709188 C T OTOA Missense_Mutation p.P278S 0.26 tolerated(0.49) benign(0.152) TCGA-VS-A8QA-01 16 28856750 28856750 T C TUFM Missense_Mutation p.N100S 0.64 deleterious(0.05) benign(0.099) TCGA-VS-A8QA-01 16 30779236 30779236 G A RNF40 Missense_Mutation p.R484H 0.65 deleterious(0) probably_damaging(0.996) TCGA-VS-A8QA-01 16 4242530 4242530 C T SRL Missense_Mutation p.R349H 0.23 tolerated(0.05) probably_damaging(0.984) TCGA-VS-A8QA-01 16 4484491 4484491 G C DNAJA3 Missense_Mutation p.Q106H 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-VS-A8QA-01 16 53635240 53635240 C G RPGRIP1L 3'UTR 0.12 TCGA-VS-A8QA-01 16 67324829 67324829 C T KCTD19 Missense_Mutation p.D876N 0.58 tolerated(0.51) benign(0.002) TCGA-VS-A8QA-01 16 7629801 7629801 C T RBFOX1 Missense_Mutation p.T118M 0.47 deleterious(0) probably_damaging(0.91) TCGA-VS-A8QA-01 16 85688485 85688485 G A GSE1 Missense_Mutation p.D229N 0.21 tolerated(0.08) unknown(0) TCGA-VS-A8QA-01 16 87717812 87717812 G A JPH3 Missense_Mutation p.A409T 0.66 deleterious(0.05) benign(0.41) TCGA-VS-A8QA-01 16 87985083 87985083 C T BANP 5'UTR 0.55 TCGA-VS-A8QA-01 17 10318483 10318483 C TTCAT MYH8 Frame_Shift_Ins p.R252Nfs*15 0.43 TCGA-VS-A8QA-01 17 11660978 11660978 C A DNAH9 Missense_Mutation p.L2322I 0.40 benign(0.005) TCGA-VS-A8QA-01 17 16012211 16012211 G A NCOR1 Missense_Mutation p.R691C 0.14 probably_damaging(0.972) TCGA-VS-A8QA-01 17 17801907 17801907 C G TOM1L2 Intron 0.22 TCGA-VS-A8QA-01 17 33690017 33690017 C G SLFN11 Missense_Mutation p.L270F 0.40 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QA-01 17 37317590 37317590 C T ARL5C Silent p.V90V 0.25 TCGA-VS-A8QA-01 17 37868208 37868208 C A ERBB2 Missense_Mutation p.S310Y 0.47 deleterious(0) probably_damaging(0.996) TCGA-VS-A8QA-01 17 38340860 38340860 G A RAPGEFL1 Missense_Mutation p.E49K 0.33 tolerated(0.89) benign(0.127) TCGA-VS-A8QA-01 17 38340882 38340882 G A RAPGEFL1 Missense_Mutation p.R56Q 0.47 tolerated(0.31) benign(0.024) TCGA-VS-A8QA-01 17 39978486 39978486 C T FKBP10 Silent p.F525F 0.50 TCGA-VS-A8QA-01 17 42169793 42169793 G A HDAC5 Missense_Mutation p.T293I 0.34 tolerated(0.08) probably_damaging(0.994) TCGA-VS-A8QA-01 17 46626541 46626541 C G HOXB3 3'UTR 0.35 TCGA-VS-A8QA-01 17 4675259 4675259 C T TM4SF5 Silent p.L14L 0.41 TCGA-VS-A8QA-01 17 48540865 48540865 C G ACSF2 Missense_Mutation p.S333C 0.46 deleterious(0.03) benign(0.35) TCGA-VS-A8QA-01 17 48541616 48541616 C T ACSF2 Silent p.I392I 0.39 TCGA-VS-A8QA-01 17 58734000 58734000 G A PPM1D Missense_Mutation p.R353Q 0.35 tolerated(0.09) probably_damaging(0.93) TCGA-VS-A8QA-01 17 6946322 6946322 G A SLC16A11 Silent p.A115A 0.50 TCGA-VS-A8QA-01 17 73467893 73467893 T C KIAA0195 5'UTR 0.13 TCGA-VS-A8QA-01 17 78318598 78318598 G C RNF213 Missense_Mutation p.D2155H 0.06 probably_damaging(1) TCGA-VS-A8QA-01 17 79254504 79254504 G A SLC38A10 Silent p.L177L 0.25 TCGA-VS-A8QA-01 17 8138410 8138410 T C CTC1 Missense_Mutation p.Y467C 0.41 deleterious(0) probably_damaging(1) TCGA-VS-A8QA-01 17 8283248 8283248 G C RPL26 Missense_Mutation p.R59G 0.52 deleterious(0.02) probably_damaging(0.924) TCGA-VS-A8QA-01 18 43247047 43247047 G A SLC14A2 Missense_Mutation p.E569K 0.45 tolerated(0.79) benign(0.05) TCGA-VS-A8QA-01 18 44561569 44561569 C T TCEB3B Missense_Mutation p.E23K 0.52 deleterious(0.01) benign(0.024) TCGA-VS-A8QA-01 18 74659594 74659594 G A ZNF236 Missense_Mutation p.E1632K 0.65 deleterious(0.04) benign(0.271) TCGA-VS-A8QA-01 19 12243496 12243496 C T ZNF20 Missense_Mutation p.G502E 0.37 deleterious(0.01) possibly_damaging(0.867) TCGA-VS-A8QA-01 19 18870894 18870894 G A CRTC1 Missense_Mutation p.D264N 0.34 deleterious(0) probably_damaging(0.983) TCGA-VS-A8QA-01 19 18963849 18963849 C T UPF1 Silent p.I342I 0.32 TCGA-VS-A8QA-01 19 19115250 19115250 C G SUGP2 Missense_Mutation p.E886Q 0.47 tolerated(0.15) benign(0.04) TCGA-VS-A8QA-01 19 19763525 19763525 C T ATP13A1 Missense_Mutation p.R702Q 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-VS-A8QA-01 19 2123859 2123859 G A AP3D1 Silent p.S292S 0.51 TCGA-VS-A8QA-01 19 22155700 22155700 C T ZNF208 Silent p.K712K 0.35 TCGA-VS-A8QA-01 19 2878396 2878396 C T ZNF556 3'UTR 0.35 TCGA-VS-A8QA-01 19 2917938 2917938 G C ZNF57 Missense_Mutation p.R440T 0.27 deleterious(0.03) probably_damaging(0.977) TCGA-VS-A8QA-01 19 3590113 3590113 C T GIPC3 Silent p.G288G 0.61 TCGA-VS-A8QA-01 19 44058933 44058933 G A XRCC1 Silent p.F93F 0.45 TCGA-VS-A8QA-01 19 44223142 44223142 C A IRGC Silent p.R144R 0.43 TCGA-VS-A8QA-01 19 44661331 44661331 C T ZNF234 Nonsense_Mutation p.Q388* 0.41 TCGA-VS-A8QA-01 19 45731503 45731503 G C EXOC3L2 Missense_Mutation p.L38V 0.47 tolerated(0.75) probably_damaging(0.998) TCGA-VS-A8QA-01 19 48918205 48918205 C T GRIN2D Silent p.I499I 0.34 TCGA-VS-A8QA-01 19 51376714 51376714 G A KLK2 5'UTR 0.48 TCGA-VS-A8QA-01 19 51538134 51538134 C T KLK12 5'UTR 0.53 TCGA-VS-A8QA-01 19 52400189 52400189 C T ZNF649 Missense_Mutation p.E20K 0.31 tolerated(0.07) possibly_damaging(0.562) TCGA-VS-A8QA-01 19 55435002 55435002 C T NLRP7 3'UTR 0.53 TCGA-VS-A8QA-01 19 57772881 57772881 G A CTC-444N24.8 RNA 0.56 TCGA-VS-A8QA-01 19 57867832 57867832 G A ZNF304 Missense_Mutation p.E199K 0.49 tolerated(0.16) benign(0.258) TCGA-VS-A8QA-01 19 6415422 6415422 C T KHSRP Silent p.T645T 0.50 TCGA-VS-A8QA-01 19 757089 757089 C T MISP Missense_Mutation p.P48L 0.46 tolerated(0.36) benign(0.007) TCGA-VS-A8QA-01 19 8923829 8923829 C G ZNF558 Missense_Mutation p.R106T 0.37 tolerated(0.29) benign(0.002) TCGA-VS-A8QA-01 1 1078159 1078159 G A RP11-465B22.5 RNA 0.32 TCGA-VS-A8QA-01 1 1078341 1078341 G T RP11-465B22.5 RNA 0.35 TCGA-VS-A8QA-01 1 1078535 1078535 G A RP11-465B22.5 RNA 0.45 TCGA-VS-A8QA-01 1 120469140 120469140 G A NOTCH2 Silent p.F1329F 0.65 TCGA-VS-A8QA-01 1 12443062 12443062 G C VPS13D Missense_Mutation p.D3740H 0.33 probably_damaging(0.997) TCGA-VS-A8QA-01 1 150307683 150307683 G C PRPF3 Missense_Mutation p.E336Q 0.49 tolerated(0.82) benign(0.021) TCGA-VS-A8QA-01 1 172579633 172579633 T G SUCO 3'UTR 0.50 TCGA-VS-A8QA-01 1 197104322 197104322 C T ASPM Missense_Mutation p.E693K 0.42 deleterious(0) possibly_damaging(0.45) TCGA-VS-A8QA-01 1 2075938 2075938 C G PRKCZ Intron 0.33 TCGA-VS-A8QA-01 1 2116707 2116707 G A PRKCZ 3'UTR 0.44 TCGA-VS-A8QA-01 1 235507328 235507328 G A GGPS1 3'UTR 0.39 TCGA-VS-A8QA-01 1 238090232 238090232 C T RP11-193H5.1 RNA 0.35 TCGA-VS-A8QA-01 1 247614445 247614445 G T OR2B11 Silent p.L280L 0.34 TCGA-VS-A8QA-01 1 28208918 28208918 G A THEMIS2 Silent p.E361E 0.31 TCGA-VS-A8QA-01 1 3645961 3645961 C T TP73 Missense_Mutation p.P382L 0.84 deleterious(0) probably_damaging(0.971) TCGA-VS-A8QA-01 1 36558040 36558040 G A ADPRHL2 Missense_Mutation p.R240H 0.47 tolerated(0.56) benign(0.001) TCGA-VS-A8QA-01 1 43900955 43900955 G A SZT2 Missense_Mutation p.E1940K 0.35 deleterious(0) probably_damaging(0.993) TCGA-VS-A8QA-01 1 47610099 47610099 G A CYP4A22 Silent p.R287R 0.43 TCGA-VS-A8QA-01 1 48697224 48697224 C T SLC5A9 Silent p.L231L 0.35 TCGA-VS-A8QA-01 1 55317824 55317824 G A DHCR24 3'UTR 0.42 TCGA-VS-A8QA-01 1 6298880 6298880 G A ICMT 5'Flank 0.39 TCGA-VS-A8QA-01 1 66070765 66070765 C T LEPR Missense_Mutation p.S483F 0.38 deleterious(0) possibly_damaging(0.894) TCGA-VS-A8QA-01 1 75009813 75009813 C A TNNI3K 3'UTR 0.33 TCGA-VS-A8QA-01 1 85647791 85647791 C T SYDE2 Missense_Mutation p.R845K 0.54 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QA-01 1 93744182 93744182 A G CCDC18 3'UTR 0.30 TCGA-VS-A8QA-01 20 16253379 16253379 C G KIF16B 3'UTR 0.36 TCGA-VS-A8QA-01 20 20350769 20350769 C G INSM1 3'UTR 0.36 TCGA-VS-A8QA-01 20 2840707 2840707 G A VPS16 Silent p.L50L 0.26 TCGA-VS-A8QA-01 20 3025455 3025455 G A GNRH2 Silent p.R95R 0.35 TCGA-VS-A8QA-01 20 31768365 31768365 G A BPIFA2 Silent p.%3D 0.19 TCGA-VS-A8QA-01 20 37547910 37547910 C T PPP1R16B 3'UTR 0.34 TCGA-VS-A8QA-01 20 43954019 43954019 C G SDC4 3'UTR 0.28 TCGA-VS-A8QA-01 20 43954755 43954755 C T SDC4 3'UTR 0.45 TCGA-VS-A8QA-01 20 43955454 43955454 C G SDC4 3'UTR 0.33 TCGA-VS-A8QA-01 20 43955464 43955464 C T SDC4 3'UTR 0.26 TCGA-VS-A8QA-01 20 43955847 43955847 C T SDC4 3'UTR 0.23 TCGA-VS-A8QA-01 20 43955979 43955979 C T SDC4 Silent p.K174K 0.30 TCGA-VS-A8QA-01 20 47886484 47886484 C G ZNFX1 Missense_Mutation p.G622A 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A8QA-01 20 57415667 57415667 G A RP4-806M20.3 5'Flank 0.23 TCGA-VS-A8QA-01 20 62701462 62701462 C A TCEA2 Intron 0.43 TCGA-VS-A8QA-01 20 62821488 62821488 C G MYT1 5'UTR 0.24 TCGA-VS-A8QA-01 21 10941942 10941942 G A TPTE Missense_Mutation p.S254F 0.11 deleterious(0) possibly_damaging(0.54) TCGA-VS-A8QA-01 21 34923267 34923267 C T SON Missense_Mutation p.S577L 0.70 benign(0.32) TCGA-VS-A8QA-01 21 38132049 38132049 C T HLCS Missense_Mutation p.E592K 0.11 tolerated(0.35) possibly_damaging(0.803) TCGA-VS-A8QA-01 21 45726573 45726573 C T PFKL Missense_Mutation p.A32V 0.69 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QA-01 21 46897866 46897866 G A COL18A1 Missense_Mutation p.R583K 0.18 unknown(0) TCGA-VS-A8QA-01 22 20077506 20077506 A G DGCR8 Missense_Mutation p.D344G 0.35 tolerated(0.12) benign(0) TCGA-VS-A8QA-01 22 20131258 20131258 C T ZDHHC8 Missense_Mutation p.P702L 0.38 deleterious_low_confidence(0.02) benign(0.231) TCGA-VS-A8QA-01 22 21331161 21331161 T A AIFM3 Missense_Mutation p.F384L 0.35 tolerated(0.89) benign(0.208) TCGA-VS-A8QA-01 22 24085890 24085890 C T ZNF70 3'UTR 0.30 TCGA-VS-A8QA-01 22 36960358 36960358 G A CACNG2 3'UTR 0.56 TCGA-VS-A8QA-01 22 39081896 39081896 C T JOSD1 3'UTR 0.38 TCGA-VS-A8QA-01 22 39907427 39907427 C T MIEF1 Missense_Mutation p.T43M 0.34 deleterious(0) probably_damaging(0.997) TCGA-VS-A8QA-01 2 107084670 107084670 C G RGPD3 Intron 0.44 TCGA-VS-A8QA-01 2 10931948 10931948 T C PDIA6 Missense_Mutation p.Y186C 0.38 deleterious(0) probably_damaging(0.976) TCGA-VS-A8QA-01 2 113975151 113975151 G A PAX8 3'UTR 0.35 TCGA-VS-A8QA-01 2 128477795 128477795 G A WDR33 Nonsense_Mutation p.Q602* 0.32 TCGA-VS-A8QA-01 2 130897481 130897481 C G CCDC74B Missense_Mutation p.K330N 0.16 deleterious(0) probably_damaging(0.997) TCGA-VS-A8QA-01 2 132290625 132290625 G C CCDC74A Missense_Mutation p.K330N 0.20 deleterious(0) probably_damaging(0.988) TCGA-VS-A8QA-01 2 141457917 141457917 C A LRP1B Missense_Mutation p.R2234I 0.42 benign(0.02) TCGA-VS-A8QA-01 2 163003963 163003963 G A GCG Missense_Mutation p.R52C 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A8QA-01 2 182794595 182794595 C T SSFA2 3'UTR 0.25 TCGA-VS-A8QA-01 2 212243472 212243472 G T ERBB4 3'UTR 0.43 TCGA-VS-A8QA-01 2 216213921 216213921 C G ATIC Missense_Mutation p.I536M 0.52 tolerated(0.05) benign(0.005) TCGA-VS-A8QA-01 2 220115532 220115532 C G TUBA4A Missense_Mutation p.E297Q 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.7) TCGA-VS-A8QA-01 2 220349209 220349209 G A SPEG Missense_Mutation p.E2342K 0.42 possibly_damaging(0.876) TCGA-VS-A8QA-01 2 242012825 242012825 C G SNED1 Intron 0.43 TCGA-VS-A8QA-01 2 61149452 61149452 G A REL Missense_Mutation p.A548T 0.08 tolerated_low_confidence(0.45) benign(0.001) TCGA-VS-A8QA-01 2 70035111 70035111 G A ANXA4 Missense_Mutation p.S127N 0.56 tolerated(0.71) benign(0) TCGA-VS-A8QA-01 2 74688472 74688472 C T MOGS Missense_Mutation p.R815Q 0.45 tolerated(0.17) benign(0.075) TCGA-VS-A8QA-01 2 86363027 86363027 C T PTCD3 Intron 0.23 TCGA-VS-A8QA-01 3 100557296 100557296 G A ABI3BP Intron 0.33 TCGA-VS-A8QA-01 3 109028038 109028038 G A DPPA2 Silent p.L107L 0.27 TCGA-VS-A8QA-01 3 111688661 111688661 G A PHLDB2 Missense_Mutation p.R1147Q 0.11 deleterious(0) possibly_damaging(0.896) TCGA-VS-A8QA-01 3 112299748 112299748 G A SLC35A5 Missense_Mutation p.E262K 0.21 deleterious(0.01) possibly_damaging(0.895) TCGA-VS-A8QA-01 3 11600919 11600919 G A VGLL4 Missense_Mutation p.S169F 0.73 deleterious(0) possibly_damaging(0.845) TCGA-VS-A8QA-01 3 119205772 119205772 C T POGLUT1 Missense_Mutation p.S244F 0.16 deleterious(0.02) probably_damaging(0.957) TCGA-VS-A8QA-01 3 122642525 122642525 C T SEMA5B Missense_Mutation p.R458H 0.16 deleterious(0) probably_damaging(0.958) TCGA-VS-A8QA-01 3 128888383 128888383 G A CNBP 3'Flank 0.33 TCGA-VS-A8QA-01 3 135863972 135863972 G A PPP2R3A Silent p.E1139E 0.42 TCGA-VS-A8QA-01 3 178525133 178525133 C T KCNMB2 Intron 0.13 TCGA-VS-A8QA-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.10 tolerated(0.06) possibly_damaging(0.801) TCGA-VS-A8QA-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.29 tolerated(0.36) benign(0.4) TCGA-VS-A8QA-01 3 180667038 180667038 G A FXR1 Silent p.K179K 0.09 TCGA-VS-A8QA-01 3 182590198 182590198 G A ATP11B Missense_Mutation p.E641K 0.17 tolerated(0.35) benign(0.01) TCGA-VS-A8QA-01 3 183897998 183897998 G A AP2M1 Missense_Mutation p.A128T 0.27 tolerated(0.88) benign(0.008) TCGA-VS-A8QA-01 3 190362060 190362060 G C IL1RAP Missense_Mutation p.E359Q 0.20 tolerated(0.06) probably_damaging(0.966) TCGA-VS-A8QA-01 3 194222070 194222070 G A ATP13A3 5'Flank 0.28 TCGA-VS-A8QA-01 3 195513151 195513151 G A MUC4 Missense_Mutation p.S1767F 0.05 benign(0.224) TCGA-VS-A8QA-01 3 195513266 195513266 G A MUC4 Missense_Mutation p.L1729F 0.05 possibly_damaging(0.768) TCGA-VS-A8QA-01 3 196668906 196668906 C A NCBP2 Intron 0.24 TCGA-VS-A8QA-01 3 196842852 196842852 G A DLG1 Silent p.A496A 0.15 TCGA-VS-A8QA-01 3 42708485 42708485 C T ZBTB47 3'Flank 0.09 TCGA-VS-A8QA-01 3 52547173 52547173 C T STAB1 Silent p.F1062F 0.75 TCGA-VS-A8QA-01 4 10502925 10502925 C T CLNK Silent p.E365E 0.39 TCGA-VS-A8QA-01 4 111543517 111543517 C T PITX2 Missense_Mutation p.A34T 0.44 tolerated_low_confidence(0.51) benign(0.001) TCGA-VS-A8QA-01 4 125590449 125590449 C T ANKRD50 Missense_Mutation p.C1328Y 0.38 tolerated_low_confidence(1) benign(0) TCGA-VS-A8QA-01 4 140311100 140311100 G A NAA15 3'UTR 0.39 TCGA-VS-A8QA-01 4 151392850 151392850 G A LRBA Missense_Mutation p.S2209F 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A8QA-01 4 167020667 167020667 C A TLL1 Missense_Mutation p.F965L 0.21 deleterious(0.01) possibly_damaging(0.902) TCGA-VS-A8QA-01 4 20526781 20526781 A G SLIT2 Missense_Mutation p.Q483R 0.56 tolerated(0.12) possibly_damaging(0.885) TCGA-VS-A8QA-01 4 2067583 2067583 G C NAT8L 3'UTR 0.32 TCGA-VS-A8QA-01 4 24578039 24578039 G A DHX15 Missense_Mutation p.P112S 0.32 tolerated(0.32) benign(0.001) TCGA-VS-A8QA-01 4 3949842 3949842 C T FAM86EP RNA 0.39 TCGA-VS-A8QA-01 4 40440323 40440323 G A RBM47 Silent p.F196F 0.44 TCGA-VS-A8QA-01 4 71201958 71201958 G T CABS1 3'UTR 0.30 TCGA-VS-A8QA-01 4 90169746 90169746 C G GPRIN3 Missense_Mutation p.D506H 0.43 deleterious(0.02) possibly_damaging(0.519) TCGA-VS-A8QA-01 5 118479590 118479590 G C DMXL1 Missense_Mutation p.G811R 0.34 deleterious(0) possibly_damaging(0.813) TCGA-VS-A8QA-01 5 132073118 132073118 C A KIF3A 5'UTR 0.40 TCGA-VS-A8QA-01 5 137500843 137500843 G A BRD8 Missense_Mutation p.P431S 0.39 tolerated(0.16) benign(0.341) TCGA-VS-A8QA-01 5 172195422 172195422 C T DUSP1 3'UTR 0.36 TCGA-VS-A8QA-01 5 31448656 31448656 C G DROSHA Silent p.S960S 0.24 TCGA-VS-A8QA-01 5 32090733 32090733 G A PDZD2 Silent p.L2393L 0.30 TCGA-VS-A8QA-01 5 63256825 63256825 C A HTR1A Missense_Mutation p.R241L 0.35 tolerated(0.3) benign(0.112) TCGA-VS-A8QA-01 6 10415039 10415039 G A TFAP2A Intron 0.62 TCGA-VS-A8QA-01 6 117700232 117700232 G A ROS1 Missense_Mutation p.R863W 0.38 tolerated(0.08) probably_damaging(0.969) TCGA-VS-A8QA-01 6 12120170 12120170 G A HIVEP1 Missense_Mutation p.V48M 0.43 deleterious(0) probably_damaging(0.994) TCGA-VS-A8QA-01 6 136513425 136513425 G A PDE7B 3'UTR 0.37 TCGA-VS-A8QA-01 6 26465569 26465569 G C BTN2A1 Missense_Mutation p.R290T 0.41 deleterious(0.01) benign(0.006) TCGA-VS-A8QA-01 6 30593429 30593429 G A MRPS18B Missense_Mutation p.R211K 0.37 tolerated(0.41) benign(0.022) TCGA-VS-A8QA-01 6 31675849 31675849 G A LY6G6F Missense_Mutation p.R195Q 0.47 deleterious(0.02) possibly_damaging(0.602) TCGA-VS-A8QA-01 6 32311016 32311016 C T C6orf10 Intron 0.37 TCGA-VS-A8QA-01 6 33283170 33283170 G A ZBTB22 Silent p.L508L 0.31 TCGA-VS-A8QA-01 6 34730392 34730392 C A SNRPC Missense_Mutation p.H24Q 0.26 deleterious(0) probably_damaging(0.98) TCGA-VS-A8QA-01 6 35442859 35442859 C T TEAD3 Missense_Mutation p.G424R 0.43 deleterious(0) probably_damaging(1) TCGA-VS-A8QA-01 6 38939367 38939367 G A DNAH8 Splice_Site p.X3934_splice 0.56 TCGA-VS-A8QA-01 6 56391260 56391260 C T DST Missense_Mutation p.E3387K 0.56 benign(0.24) TCGA-VS-A8QA-01 6 57512623 57512623 C T PRIM2 3'UTR 0.07 TCGA-VS-A8QA-01 6 73905598 73905598 G A KCNQ5 3'UTR 0.40 TCGA-VS-A8QA-01 7 100779024 100779024 G A SERPINE1 Silent p.A343A 0.46 TCGA-VS-A8QA-01 7 106830643 106830643 G C HBP1 Missense_Mutation p.L316F 0.31 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QA-01 7 107735695 107735695 C T LAMB4 Missense_Mutation p.G483E 0.50 deleterious(0) probably_damaging(1) TCGA-VS-A8QA-01 7 117305538 117305538 C G CFTR Missense_Mutation p.L1388V 0.36 tolerated(0.11) benign(0.001) TCGA-VS-A8QA-01 7 148457522 148457522 G C CUL1 Missense_Mutation p.E241D 0.43 deleterious(0.05) possibly_damaging(0.891) TCGA-VS-A8QA-01 7 150493669 150493669 G A TMEM176B Intron 0.40 TCGA-VS-A8QA-01 7 153750016 153750016 C T DPP6 Silent p.G37G 0.31 TCGA-VS-A8QA-01 7 23300204 23300204 C T GPNMB Missense_Mutation p.S277F 0.37 deleterious(0) probably_damaging(1) TCGA-VS-A8QA-01 7 27147376 27147376 C T HOXA3 3'UTR 0.28 TCGA-VS-A8QA-01 7 27194648 27194648 G A HOXA7 Silent p.D191D 0.32 TCGA-VS-A8QA-01 7 43153814 43153814 G T HECW1 5'UTR 0.35 TCGA-VS-A8QA-01 7 44620535 44620535 G C TMED4 Intron 0.50 TCGA-VS-A8QA-01 7 47385825 47385825 G T TNS3 Missense_Mutation p.P804Q 0.51 tolerated(0.06) benign(0.045) TCGA-VS-A8QA-01 7 4845238 4845238 C T RADIL Nonsense_Mutation p.W750* 0.40 TCGA-VS-A8QA-01 7 75192552 75192552 G C HIP1 Missense_Mutation p.F273L 0.33 deleterious(0.03) benign(0.219) TCGA-VS-A8QA-01 7 83047796 83047796 G A SEMA3E Missense_Mutation p.P154S 0.44 tolerated(0.8) benign(0.186) TCGA-VS-A8QA-01 7 88389172 88389172 C T ZNF804B 5'UTR 0.27 TCGA-VS-A8QA-01 7 91793915 91793915 G A LRRD1 Missense_Mutation p.S201L 0.27 tolerated(0.38) benign(0.01) TCGA-VS-A8QA-01 7 92764954 92764954 C G SAMD9L Missense_Mutation p.E111Q 0.33 tolerated(0.23) benign(0.037) TCGA-VS-A8QA-01 8 101051188 101051188 G A RGS22 Nonsense_Mutation p.Q713* 0.52 TCGA-VS-A8QA-01 8 101051204 101051204 G A RGS22 Silent p.F707F 0.61 TCGA-VS-A8QA-01 8 105025711 105025711 G A RIMS2 Missense_Mutation p.R1029K 0.58 tolerated_low_confidence(0.06) probably_damaging(0.992) TCGA-VS-A8QA-01 8 121243713 121243713 G C COL14A1 Missense_Mutation p.Q735H 0.56 deleterious(0.01) benign(0.281) TCGA-VS-A8QA-01 8 133807003 133807003 C T PHF20L1 Silent p.L94L 0.70 TCGA-VS-A8QA-01 8 2027001 2027001 C T MYOM2 Silent p.L483L 0.70 TCGA-VS-A8QA-01 8 33371091 33371091 C T TTI2 5'UTR 0.55 TCGA-VS-A8QA-01 8 42692833 42692833 A C THAP1 3'UTR 0.24 TCGA-VS-A8QA-01 8 92983068 92983068 C T RUNX1T1 Missense_Mutation p.V464I 0.68 deleterious(0.01) possibly_damaging(0.84) TCGA-VS-A8QA-01 9 100972949 100972949 C T TBC1D2 Silent p.L554L 0.35 TCGA-VS-A8QA-01 9 111812852 111812852 G A TMEM245 Silent p.L659L 0.39 TCGA-VS-A8QA-01 9 113637472 113637472 C G LPAR1 3'UTR 0.60 TCGA-VS-A8QA-01 9 127572368 127572368 G A OLFML2A Missense_Mutation p.E546K 0.33 deleterious(0) possibly_damaging(0.635) TCGA-VS-A8QA-01 9 130476444 130476444 G A PTRH1 Nonsense_Mutation p.R194* 0.67 TCGA-VS-A8QA-01 9 27029089 27029090 - AT IFT74 Frame_Shift_Ins p.E348Mfs*8 0.17 TCGA-VS-A8QA-01 9 27029090 27029091 - GATTTAA IFT74 Frame_Shift_Ins p.E348Gfs*8 0.17 TCGA-VS-A8QA-01 9 5720637 5720637 G A KIAA1432 Missense_Mutation p.D203N 0.26 tolerated(1) benign(0.02) TCGA-VS-A8QA-01 X 10423046 10423046 C T MID1 Missense_Mutation p.E507K 0.31 deleterious(0.05) probably_damaging(0.983) TCGA-VS-A8QA-01 X 106843795 106843795 C G FRMPD3 Silent p.L875L 0.27 TCGA-VS-A8QA-01 X 107018476 107018476 C T TSC22D3 Silent p.E58E 0.55 TCGA-VS-A8QA-01 X 107978300 107978300 C T IRS4 Silent p.A425A 0.44 TCGA-VS-A8QA-01 X 108884867 108884867 G C ACSL4 3'UTR 0.50 TCGA-VS-A8QA-01 X 11783862 11783862 C T MSL3 Intron 0.27 TCGA-VS-A8QA-01 X 133562544 133562544 C T PHF6 3'UTR 0.36 TCGA-VS-A8QA-01 X 150780150 150780150 T A PASD1 Missense_Mutation p.F44L 0.33 deleterious(0.01) probably_damaging(0.917) TCGA-VS-A8QA-01 X 153543633 153543633 C G TKTL1 Missense_Mutation p.F325L 0.44 tolerated(0.12) benign(0.308) TCGA-VS-A8QA-01 X 18606179 18606179 T G CDKL5 Silent p.L220L 0.24 TCGA-VS-A8QA-01 X 30739014 30739014 C T GK Missense_Mutation p.A462V 0.31 tolerated(0.05) benign(0.233) TCGA-VS-A8QA-01 X 35944209 35944209 C T CXorf22 Missense_Mutation p.P109S 0.05 deleterious(0.01) probably_damaging(1) TCGA-VS-A8QA-01 X 3735581 3735581 G T RP11-706O15.1 3'UTR 0.29 TCGA-VS-A8QA-01 X 49370669 49370669 C T GAGE1 3'UTR 0.21 TCGA-VS-A8QA-01 X 50051797 50051797 C A CCNB3 Missense_Mutation p.P210T 0.25 tolerated(0.31) benign(0.299) TCGA-VS-A8QA-01 X 53404700 53404700 G T SMC1A 3'UTR 0.21 TCGA-VS-A8QA-01 X 57935076 57935076 C T ZXDA Silent p.Q593Q 0.36 TCGA-VS-A8QA-01 X 71349728 71349728 G C RGAG4 Missense_Mutation p.P555A 0.25 deleterious_low_confidence(0) unknown(0) TCGA-VS-A8QA-01 X 72901570 72901570 G C CHIC1 3'UTR 0.29 TCGA-VS-A8QA-01 X 86924355 86924355 C T KLHL4 Silent p.F708F 0.32 TCGA-VS-A8QC-01 10 104233741 104233741 G C TMEM180 Silent p.L421L 0.24 TCGA-VS-A8QC-01 10 124691456 124691456 C G C10orf88 3'UTR 0.22 TCGA-VS-A8QC-01 10 24813525 24813525 G C KIAA1217 Missense_Mutation p.L910F 0.14 tolerated(0.71) possibly_damaging(0.642) TCGA-VS-A8QC-01 10 30657234 30657234 G T AL161651.1 5'Flank 0.42 TCGA-VS-A8QC-01 10 31816133 31816133 G C ZEB1 Missense_Mutation p.G1107R 0.10 deleterious_low_confidence(0.02) benign(0) TCGA-VS-A8QC-01 10 38241511 38241511 C T ZNF25 Silent p.Q305Q 0.13 TCGA-VS-A8QC-01 10 49935615 49935615 C A WDFY4 Missense_Mutation p.F294L 0.25 deleterious(0) probably_damaging(0.998) TCGA-VS-A8QC-01 10 64968109 64968109 C G JMJD1C Missense_Mutation p.R1107T 0.34 deleterious(0) possibly_damaging(0.765) TCGA-VS-A8QC-01 10 78647010 78647010 G A KCNMA1 3'Flank 0.33 TCGA-VS-A8QC-01 10 93784603 93784603 C T BTAF1 Nonsense_Mutation p.Q1652* 0.24 TCGA-VS-A8QC-01 10 94834903 94834903 C T CYP26A1 Intron 0.54 TCGA-VS-A8QC-01 10 96702012 96702012 G A CYP2C9 Missense_Mutation p.R132Q 0.10 deleterious(0.01) possibly_damaging(0.62) TCGA-VS-A8QC-01 11 107313678 107313678 G A CWF19L2 Missense_Mutation p.T146I 0.60 tolerated(0.05) benign(0.028) TCGA-VS-A8QC-01 11 113073151 113073151 G C NCAM1 Missense_Mutation p.E94Q 0.20 deleterious(0.03) possibly_damaging(0.884) TCGA-VS-A8QC-01 11 17429997 17429997 C A ABCC8 Missense_Mutation p.C921F 0.09 deleterious(0.04) benign(0.009) TCGA-VS-A8QC-01 11 19261733 19261733 G C E2F8 5'UTR 0.08 TCGA-VS-A8QC-01 11 20869170 20869170 G A NELL1 Missense_Mutation p.R126Q 0.30 deleterious(0.04) possibly_damaging(0.826) TCGA-VS-A8QC-01 11 59560889 59560889 G A STX3 Missense_Mutation p.E193K 0.15 deleterious(0) probably_damaging(0.965) TCGA-VS-A8QC-01 11 60183693 60183693 G C MS4A14 Missense_Mutation p.E451Q 0.16 tolerated(0.15) benign(0.057) TCGA-VS-A8QC-01 11 62655934 62655934 C T SLC3A2 Silent p.I555I 0.38 TCGA-VS-A8QC-01 11 66113561 66113561 C A B3GNT1 Nonsense_Mutation p.E403* 0.23 TCGA-VS-A8QC-01 11 70016073 70016073 C T ANO1 Intron 0.16 TCGA-VS-A8QC-01 11 7112293 7112293 G C RBMXL2 3'UTR 0.16 TCGA-VS-A8QC-01 11 77103569 77103569 C T PAK1 5'UTR 0.59 TCGA-VS-A8QC-01 12 121454196 121454196 C T C12orf43 Missense_Mutation p.E28K 0.37 deleterious(0.03) benign(0.017) TCGA-VS-A8QC-01 12 124421679 124421679 T A CCDC92 Nonsense_Mutation p.K308* 0.25 TCGA-VS-A8QC-01 12 26639200 26639200 C G ITPR2 Missense_Mutation p.R1883T 0.25 tolerated(0.1) benign(0.026) TCGA-VS-A8QC-01 12 29630310 29630310 C T OVCH1 Missense_Mutation p.E404K 0.35 tolerated(0.09) benign(0.256) TCGA-VS-A8QC-01 12 40740698 40740698 G A LRRK2 Missense_Mutation p.E2085K 0.24 tolerated(0.08) probably_damaging(0.999) TCGA-VS-A8QC-01 12 56380867 56380867 C T RAB5B Silent p.V41V 0.25 TCGA-VS-A8QC-01 12 56482607 56482607 C T ERBB3 Missense_Mutation p.T355I 0.25 deleterious(0) probably_damaging(0.998) TCGA-VS-A8QC-01 12 57457102 57457102 C T TMEM194A Missense_Mutation p.M260I 0.18 tolerated(0.82) benign(0.001) TCGA-VS-A8QC-01 12 57458492 57458492 C T TMEM194A Missense_Mutation p.M192I 0.31 tolerated(0.76) benign(0.011) TCGA-VS-A8QC-01 12 753145 753145 C T NINJ2 Intron 0.31 TCGA-VS-A8QC-01 12 82824750 82824750 G A METTL25 Missense_Mutation p.R453K 0.15 deleterious(0) probably_damaging(0.99) TCGA-VS-A8QC-01 12 98850750 98850750 G C SLC9A7P1 RNA 0.13 TCGA-VS-A8QC-01 13 113918330 113918330 C G CUL4A 3'Flank 0.40 TCGA-VS-A8QC-01 13 20077397 20077397 G C TPTE2 5'UTR 0.16 TCGA-VS-A8QC-01 13 40298678 40298678 G C COG6 Missense_Mutation p.V576L 0.31 tolerated(0.33) benign(0.002) TCGA-VS-A8QC-01 13 70293596 70293596 G A KLHL1 Silent p.V640V 0.20 TCGA-VS-A8QC-01 14 105609933 105609933 G - JAG2 Frame_Shift_Del p.Q1043Rfs*327 0.38 TCGA-VS-A8QC-01 14 21108876 21108876 G C OR6S1 Silent p.L325L 0.13 TCGA-VS-A8QC-01 14 21168478 21168478 G A RNASE4 3'UTR 0.28 TCGA-VS-A8QC-01 14 22636640 22636640 G A TRAV30 Silent p.V31V 0.50 TCGA-VS-A8QC-01 14 24901624 24901624 G T KHNYN Missense_Mutation p.G386V 0.34 deleterious(0.01) benign(0.012) TCGA-VS-A8QC-01 14 31614067 31614067 G C HECTD1 Silent p.L859L 0.12 TCGA-VS-A8QC-01 14 39597529 39597529 G T GEMIN2 Nonsense_Mutation p.E204* 0.30 TCGA-VS-A8QC-01 14 44976069 44976069 T G FSCB Missense_Mutation p.Y41S 0.36 tolerated(0.05) possibly_damaging(0.519) TCGA-VS-A8QC-01 14 55034704 55034704 G C SAMD4A Missense_Mutation p.V24L 0.22 deleterious(0) probably_damaging(0.98) TCGA-VS-A8QC-01 14 64990520 64990520 C A ZBTB1 3'UTR 0.07 TCGA-VS-A8QC-01 14 70633366 70633366 C G SLC8A3 Missense_Mutation p.D592H 0.05 deleterious(0) probably_damaging(0.922) TCGA-VS-A8QC-01 14 91925180 91925180 C T SMEK1 Missense_Mutation p.D796N 0.24 tolerated(0.17) probably_damaging(0.981) TCGA-VS-A8QC-01 14 92597343 92597343 C G CPSF2 Missense_Mutation p.I5M 0.28 deleterious(0) probably_damaging(0.994) TCGA-VS-A8QC-01 15 22848884 22848884 C T TUBGCP5 Nonsense_Mutation p.R311* 0.08 TCGA-VS-A8QC-01 15 25514801 25514801 C G SNORD115-48 5'Flank 0.71 TCGA-VS-A8QC-01 15 41763442 41763442 G T RTF1 Silent p.R366R 0.66 TCGA-VS-A8QC-01 15 65960286 65960286 G C DENND4A Missense_Mutation p.P1654A 0.25 deleterious(0) benign(0.26) TCGA-VS-A8QC-01 15 76629184 76629184 C T ISL2 5'UTR 0.38 TCGA-VS-A8QC-01 15 83456055 83456055 C T FSD2 Missense_Mutation p.E30K 0.19 tolerated(0.41) benign(0.007) TCGA-VS-A8QC-01 15 90437181 90437181 T C AP3S2 Translation_Start_Site p.M1? 0.17 deleterious(0.02) possibly_damaging(0.718) TCGA-VS-A8QC-01 15 99456501 99456501 C T IGF1R Silent p.T606T 0.17 TCGA-VS-A8QC-01 16 1392719 1392719 G T BAIAP3 Splice_Site p.X391_splice 0.19 TCGA-VS-A8QC-01 16 2155931 2155931 G A PKD1 Silent p.L2600L 0.28 TCGA-VS-A8QC-01 16 29676790 29676790 C A SPN 3'UTR 0.24 TCGA-VS-A8QC-01 16 3573264 3573264 G C CLUAP1 Missense_Mutation p.E274Q 0.25 deleterious(0.01) possibly_damaging(0.644) TCGA-VS-A8QC-01 16 66950203 66950203 C G CDH16 Missense_Mutation p.E87Q 0.33 deleterious(0) probably_damaging(0.912) TCGA-VS-A8QC-01 16 69152163 69152163 G C CHTF8 3'UTR 0.25 TCGA-VS-A8QC-01 16 69726349 69726349 G C NFAT5 Missense_Mutation p.R874T 0.33 probably_damaging(0.989) TCGA-VS-A8QC-01 16 69727192 69727192 C G NFAT5 Nonsense_Mutation p.S1155* 0.20 TCGA-VS-A8QC-01 16 71766316 71766316 C T AP1G1 3'UTR 0.12 TCGA-VS-A8QC-01 16 85010710 85010710 G C ZDHHC7 Missense_Mutation p.N284K 0.29 tolerated(0.08) possibly_damaging(0.806) TCGA-VS-A8QC-01 16 88783539 88783539 G A PIEZO1 Silent p.I2184I 0.10 TCGA-VS-A8QC-01 16 89711440 89711440 T C CHMP1A 3'UTR 0.36 TCGA-VS-A8QC-01 17 35479516 35479516 T - ACACA Frame_Shift_Del p.E2026Kfs*5 0.15 TCGA-VS-A8QC-01 17 43322423 43322423 G A FMNL1 Silent p.P892P 0.06 TCGA-VS-A8QC-01 17 43363800 43363800 C A MAP3K14 Intron 0.32 TCGA-VS-A8QC-01 17 48068137 48068137 G C DLX3 3'UTR 0.27 TCGA-VS-A8QC-01 17 56650567 56650567 G A TEX14 Silent p.T1208T 0.05 TCGA-VS-A8QC-01 17 61490968 61490968 G T TANC2 Silent p.L1247L 0.38 TCGA-VS-A8QC-01 17 62496409 62496409 G A DDX5 Missense_Mutation p.R493C 0.69 tolerated(0.08) benign(0.003) TCGA-VS-A8QC-01 17 7340030 7340048 CGAAAGCCCAGTCCCAAAG - TMEM102 Frame_Shift_Del p.E245Rfs*31 0.33 TCGA-VS-A8QC-01 17 76456275 76456275 G T DNAH17 Missense_Mutation p.A3121E 0.25 benign(0.119) TCGA-VS-A8QC-01 18 13071205 13071205 G C CEP192 Missense_Mutation p.R1781T 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-VS-A8QC-01 18 33706938 33706938 C G SLC39A6 Silent p.L11L 0.27 TCGA-VS-A8QC-01 19 10472251 10472251 G A TYK2 Silent p.L661L 0.20 TCGA-VS-A8QC-01 19 11034016 11034016 G C YIPF2 Nonsense_Mutation p.S301* 0.11 TCGA-VS-A8QC-01 19 22848072 22848072 A G ZNF492 3'UTR 0.22 TCGA-VS-A8QC-01 19 23159139 23159139 G A ZNF728 Missense_Mutation p.H334Y 0.28 deleterious(0) probably_damaging(0.983) TCGA-VS-A8QC-01 19 36273530 36273530 G A ARHGAP33 Missense_Mutation p.R421H 0.27 deleterious_low_confidence(0) possibly_damaging(0.586) TCGA-VS-A8QC-01 19 3759722 3759722 G C APBA3 Missense_Mutation p.L181V 0.10 tolerated(0.06) probably_damaging(0.996) TCGA-VS-A8QC-01 19 37880004 37880004 C T ZNF527 Silent p.I351I 0.31 TCGA-VS-A8QC-01 19 38997470 38997470 C T RYR1 Silent p.G2898G 0.27 TCGA-VS-A8QC-01 19 47769875 47769875 G A CCDC9 Missense_Mutation p.R243Q 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A8QC-01 19 53269036 53269036 C G ZNF600 Missense_Mutation p.R658T 0.33 tolerated(0.13) benign(0.103) TCGA-VS-A8QC-01 19 5455607 5455607 G A ZNRF4 Silent p.S35S 0.26 TCGA-VS-A8QC-01 19 59022708 59022708 G T SLC27A5 Missense_Mutation p.N205K 0.27 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QC-01 19 7671664 7671664 G T CAMSAP3 Missense_Mutation p.C208F 0.13 deleterious(0) probably_damaging(0.997) TCGA-VS-A8QC-01 1 111742316 111742316 G A DENND2D Missense_Mutation p.L58F 0.26 tolerated(0.08) benign(0.012) TCGA-VS-A8QC-01 1 114308328 114308328 G A RSBN1 3'UTR 0.12 TCGA-VS-A8QC-01 1 11740461 11740461 G C MAD2L2 Silent p.V36V 0.43 TCGA-VS-A8QC-01 1 11889334 11889334 G C CLCN6 Missense_Mutation p.Q401H 0.15 deleterious(0.01) possibly_damaging(0.447) TCGA-VS-A8QC-01 1 1447967 1447967 C A ATAD3A Intron 0.17 TCGA-VS-A8QC-01 1 147380410 147380410 G A GJA8 Missense_Mutation p.E110K 0.24 deleterious(0.05) benign(0.072) TCGA-VS-A8QC-01 1 154923782 154923782 G A PBXIP1 Missense_Mutation p.T112I 0.26 tolerated(0.22) benign(0.104) TCGA-VS-A8QC-01 1 155240605 155240605 G A CLK2 Missense_Mutation p.S55F 0.23 deleterious(0.01) unknown(0) TCGA-VS-A8QC-01 1 162745520 162745520 C G DDR2 Missense_Mutation p.I645M 0.17 deleterious(0.02) benign(0.091) TCGA-VS-A8QC-01 1 176526051 176526051 G A PAPPA2 Missense_Mutation p.R198H 0.20 tolerated(0.2) benign(0.001) TCGA-VS-A8QC-01 1 201453676 201453676 C T CSRP1 3'UTR 0.18 TCGA-VS-A8QC-01 1 211751399 211751399 G A SLC30A1 Nonsense_Mutation p.Q186* 0.42 TCGA-VS-A8QC-01 1 220440849 220440849 G A RAB3GAP2 Intron 0.09 TCGA-VS-A8QC-01 1 22178081 22178081 G C HSPG2 Silent p.V2372V 0.26 TCGA-VS-A8QC-01 1 22179427 22179427 G C HSPG2 Silent p.L2192L 0.30 TCGA-VS-A8QC-01 1 22182402 22182402 G C HSPG2 Missense_Mutation p.S1860W 0.26 possibly_damaging(0.786) TCGA-VS-A8QC-01 1 229434794 229434794 A G RAB4A Silent p.R172R 0.19 TCGA-VS-A8QC-01 1 23688650 23688650 G A ZNF436 Nonsense_Mutation p.Q409* 0.28 TCGA-VS-A8QC-01 1 241953892 241953892 G C WDR64 Splice_Site p.X954_splice 0.16 TCGA-VS-A8QC-01 1 32200810 32200810 G A BAI2 Silent p.L1142L 0.38 TCGA-VS-A8QC-01 1 36031437 36031437 G A NCDN 3'UTR 0.08 TCGA-VS-A8QC-01 1 900415 900415 C G KLHL17 Silent p.L591L 0.28 TCGA-VS-A8QC-01 1 983035 983035 T A AGRN Missense_Mutation p.V1200D 0.18 deleterious(0) probably_damaging(0.949) TCGA-VS-A8QC-01 20 10258336 10258336 C T SNAP25 Silent p.L26L 0.10 TCGA-VS-A8QC-01 20 31040227 31040227 G T C20orf112 Missense_Mutation p.A301D 0.15 deleterious(0.02) benign(0.358) TCGA-VS-A8QC-01 20 36982703 36982703 G A LBP Missense_Mutation p.D130N 0.20 tolerated(0.08) benign(0.443) TCGA-VS-A8QC-01 20 58547056 58547056 C G CDH26 Missense_Mutation p.L91V 0.24 deleterious(0.03) benign(0.287) TCGA-VS-A8QC-01 20 9388659 9388659 C G PLCB4 Missense_Mutation p.I569M 0.14 deleterious(0) benign(0.426) TCGA-VS-A8QC-01 21 39754753 39754753 C T ERG 3'UTR 0.18 TCGA-VS-A8QC-01 22 17073570 17073570 G C CCT8L2 5'UTR 0.10 TCGA-VS-A8QC-01 22 18178915 18178915 C T BCL2L13 Missense_Mutation p.T132I 0.14 tolerated(0.05) probably_damaging(0.993) TCGA-VS-A8QC-01 22 33733655 33733655 C T LARGE Missense_Mutation p.E422K 0.41 tolerated(0.39) benign(0.004) TCGA-VS-A8QC-01 22 35820256 35820256 C T MCM5 3'UTR 0.12 TCGA-VS-A8QC-01 22 40574046 40574046 G C TNRC6B 5'UTR 0.13 TCGA-VS-A8QC-01 22 42522944 42522944 G C CYP2D6 Silent p.V408V 0.14 TCGA-VS-A8QC-01 22 50217008 50217008 G C BRD1 Missense_Mutation p.P320A 0.07 tolerated(0.19) probably_damaging(0.967) TCGA-VS-A8QC-01 22 50987622 50987622 C T KLHDC7B Missense_Mutation p.P343S 0.35 tolerated(0.06) possibly_damaging(0.809) TCGA-VS-A8QC-01 2 166003365 166003365 C G SCN3A Missense_Mutation p.E519Q 0.48 tolerated(0.15) benign(0.097) TCGA-VS-A8QC-01 2 17860218 17860218 G A SMC6 Nonsense_Mutation p.R940* 0.06 TCGA-VS-A8QC-01 2 179430399 179430399 C G TTN Missense_Mutation p.Q26820H 0.62 TCGA-VS-A8QC-01 2 179430427 179430427 C T TTN Missense_Mutation p.R26811K 0.67 TCGA-VS-A8QC-01 2 241569879 241569879 C T GPR35 Silent p.F201F 0.33 TCGA-VS-A8QC-01 2 31588947 31588947 G A XDH Missense_Mutation p.P784L 0.37 deleterious(0) possibly_damaging(0.903) TCGA-VS-A8QC-01 2 39507432 39507432 C T MAP4K3 Nonsense_Mutation p.W565* 0.12 TCGA-VS-A8QC-01 2 47273532 47273532 G A TTC7A Silent p.L627L 0.14 TCGA-VS-A8QC-01 2 71360281 71360281 C T MPHOSPH10 Missense_Mutation p.R115C 0.20 tolerated(0.08) benign(0.001) TCGA-VS-A8QC-01 3 100084442 100084442 G C TOMM70A Missense_Mutation p.A598G 0.15 tolerated(0.07) possibly_damaging(0.873) TCGA-VS-A8QC-01 3 100170541 100170541 T - LNP1 Intron 0.18 TCGA-VS-A8QC-01 3 107096913 107096913 G C CCDC54 Missense_Mutation p.G160A 0.26 tolerated(0.08) possibly_damaging(0.894) TCGA-VS-A8QC-01 3 127981058 127981058 G A EEFSEC Silent p.E204E 0.19 TCGA-VS-A8QC-01 3 128690191 128690191 C G KIAA1257 Silent p.L369L 0.24 TCGA-VS-A8QC-01 3 133099602 133099602 C T TMEM108 Silent p.S349S 0.26 TCGA-VS-A8QC-01 3 148577624 148577624 C T CPB1 Silent p.D363D 0.13 TCGA-VS-A8QC-01 3 151055966 151055966 G A P2RY12 Missense_Mutation p.T223M 0.19 deleterious(0) probably_damaging(0.956) TCGA-VS-A8QC-01 3 152058637 152058637 T C TMEM14E Silent p.A19A 0.31 TCGA-VS-A8QC-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.17 deleterious(0.02) probably_damaging(0.959) TCGA-VS-A8QC-01 3 179093106 179093106 A C MFN1 Silent p.V358V 0.08 TCGA-VS-A8QC-01 3 195507122 195507122 G C MUC4 Missense_Mutation p.L3777V 0.18 benign(0.374) TCGA-VS-A8QC-01 3 19921101 19921101 G C EFHB 3'UTR 0.16 TCGA-VS-A8QC-01 3 52834667 52834667 G T ITIH3 Missense_Mutation p.D397Y 0.33 deleterious(0.01) possibly_damaging(0.707) TCGA-VS-A8QC-01 3 53902712 53902712 T - ACTR8 3'UTR 0.13 TCGA-VS-A8QC-01 4 100787206 100787206 C G DAPP1 Missense_Mutation p.F234L 0.18 tolerated(0.67) benign(0.001) TCGA-VS-A8QC-01 4 120188620 120188620 C G USP53 Missense_Mutation p.S373C 0.07 deleterious(0) possibly_damaging(0.848) TCGA-VS-A8QC-01 4 120221601 120221601 C G C4orf3 Silent p.V163V 0.33 TCGA-VS-A8QC-01 4 120221613 120221613 C A C4orf3 Missense_Mutation p.Q159H 0.36 deleterious_low_confidence(0) benign(0.387) TCGA-VS-A8QC-01 4 123283456 123283456 G A KIAA1109 3'UTR 0.29 TCGA-VS-A8QC-01 4 128886270 128886270 C G MFSD8 Missense_Mutation p.E7Q 0.48 tolerated(0.34) benign(0.005) TCGA-VS-A8QC-01 4 265328 265328 G A ZNF732 Missense_Mutation p.H440Y 0.29 deleterious(0.02) probably_damaging(0.917) TCGA-VS-A8QC-01 4 3344668 3344668 C T RGS12 Missense_Mutation p.S629L 0.30 tolerated(0.06) benign(0.009) TCGA-VS-A8QC-01 4 55164052 55164052 T G PDGFRA 3'UTR 0.29 TCGA-VS-A8QC-01 4 55164138 55164138 C G PDGFRA 3'UTR 0.26 TCGA-VS-A8QC-01 4 57898691 57898691 C T IGFBP7 Missense_Mutation p.G244R 0.34 deleterious(0) probably_damaging(1) TCGA-VS-A8QC-01 4 66217272 66217272 C G EPHA5 Silent p.L781L 0.09 TCGA-VS-A8QC-01 4 71347194 71347194 A T MUC7 Missense_Mutation p.T245S 0.08 tolerated(0.2) unknown(0) TCGA-VS-A8QC-01 4 82378749 82378749 G A RASGEF1B Silent p.L68L 0.25 TCGA-VS-A8QC-01 4 8391460 8391460 C A ACOX3 Missense_Mutation p.M434I 0.42 tolerated(0.2) benign(0.008) TCGA-VS-A8QC-01 4 87684218 87684218 G A PTPN13 Missense_Mutation p.D1298N 0.14 tolerated(0.22) benign(0.012) TCGA-VS-A8QC-01 5 139713104 139713104 C A HBEGF 3'UTR 0.24 TCGA-VS-A8QC-01 5 141692873 141692873 G C SPRY4 3'UTR 0.31 TCGA-VS-A8QC-01 5 147040582 147040589 TCCGAAGG - JAKMIP2 Frame_Shift_Del p.D183Efs*2 0.21 TCGA-VS-A8QC-01 5 158125919 158125919 C A EBF1 3'UTR 0.28 TCGA-VS-A8QC-01 5 158125920 158125920 C A EBF1 3'UTR 0.29 TCGA-VS-A8QC-01 5 159840486 159840486 C G SLU7 Missense_Mutation p.E183Q 0.30 deleterious(0.02) possibly_damaging(0.677) TCGA-VS-A8QC-01 5 159840496 159840496 C A SLU7 Missense_Mutation p.M179I 0.32 tolerated(0.05) benign(0.124) TCGA-VS-A8QC-01 5 169484592 169484592 G C DOCK2 Missense_Mutation p.W1463C 0.34 deleterious(0.02) possibly_damaging(0.877) TCGA-VS-A8QC-01 5 176662898 176662899 - TT NSD1 Frame_Shift_Ins p.A1293Lfs*17 0.12 TCGA-VS-A8QC-01 5 306810 306810 C T PDCD6 Missense_Mutation p.T101M 0.15 tolerated(0.08) possibly_damaging(0.833) TCGA-VS-A8QC-01 5 39377021 39377021 G A DAB2 Missense_Mutation p.P623L 0.57 deleterious(0.02) probably_damaging(1) TCGA-VS-A8QC-01 5 79837557 79837557 G C FAM151B Missense_Mutation p.R246T 0.38 deleterious(0) probably_damaging(0.992) TCGA-VS-A8QC-01 5 80561970 80561970 C G CKMT2 Missense_Mutation p.Q385E 0.26 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QC-01 6 31612334 31612334 G A BAG6 Missense_Mutation p.P478L 0.36 tolerated(0.6) benign(0.103) TCGA-VS-A8QC-01 6 96655926 96655926 C G FUT9 3'UTR 0.28 TCGA-VS-A8QC-01 6 96656741 96656741 C T FUT9 3'UTR 0.20 TCGA-VS-A8QC-01 7 100649845 100649845 T C MUC12 Missense_Mutation p.F5017S 0.12 possibly_damaging(0.514) TCGA-VS-A8QC-01 7 103292223 103292223 A T RELN Missense_Mutation p.F593I 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-VS-A8QC-01 7 128450276 128450276 G C CCDC136 Silent p.L628L 0.42 TCGA-VS-A8QC-01 7 149990431 149990431 G A ACTR3C Silent p.S41S 0.31 TCGA-VS-A8QC-01 7 4796655 4796655 C T FOXK1 Missense_Mutation p.R361C 0.07 deleterious(0.03) possibly_damaging(0.807) TCGA-VS-A8QC-01 7 64527426 64527426 G A SNORA22 3'Flank 0.20 TCGA-VS-A8QC-01 7 81689822 81689822 C A CACNA2D1 Missense_Mutation p.L267F 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-VS-A8QC-01 7 89861876 89861876 C T STEAP2 Silent p.L471L 0.34 TCGA-VS-A8QC-01 8 110376805 110376805 G T PKHD1L1 Nonsense_Mutation p.E35* 0.27 TCGA-VS-A8QC-01 8 113323254 113323254 G C CSMD3 Missense_Mutation p.S2613C 0.42 tolerated(0.17) probably_damaging(0.957) TCGA-VS-A8QC-01 8 12943427 12943427 C T DLC1 Missense_Mutation p.E1494K 0.16 deleterious(0.03) possibly_damaging(0.64) TCGA-VS-A8QC-01 8 133146626 133146626 C G KCNQ3 Missense_Mutation p.M570I 0.08 tolerated(0.13) probably_damaging(0.91) TCGA-VS-A8QC-01 8 145065857 145065857 C G GRINA Intron 0.14 TCGA-VS-A8QC-01 8 145247227 145247227 C T MROH1 Missense_Mutation p.L291F 0.42 deleterious(0) probably_damaging(0.994) TCGA-VS-A8QC-01 8 19250976 19250976 C T SH2D4A Missense_Mutation p.S399F 0.20 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QC-01 8 24349516 24349516 G A ADAM7 Missense_Mutation p.R486K 0.16 deleterious(0.04) benign(0.438) TCGA-VS-A8QC-01 8 48825075 48825075 G C PRKDC Silent p.G943G 0.24 TCGA-VS-A8QC-01 8 92083379 92083379 C A OTUD6B Silent p.G62G 0.38 TCGA-VS-A8QC-01 9 111962598 111962598 G A EPB41L4B Missense_Mutation p.R655C 0.08 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-VS-A8QC-01 9 114904738 114904738 T C SUSD1 Missense_Mutation p.I190V 0.32 tolerated(0.12) benign(0.203) TCGA-VS-A8QC-01 9 119159473 119159473 T A PAPPA 3'UTR 0.18 TCGA-VS-A8QC-01 9 125316141 125316141 C T OR1N2 Silent p.I231I 0.18 TCGA-VS-A8QC-01 9 132595884 132595884 G C C9orf78 Intron 0.17 TCGA-VS-A8QC-01 9 27949804 27949804 T C LINGO2 Missense_Mutation p.E289G 0.26 deleterious(0.02) benign(0.115) TCGA-VS-A8QC-01 9 38586216 38586216 C T ANKRD18A Silent p.L737L 0.10 TCGA-VS-A8QC-01 9 79119548 79119548 T A GCNT1 3'UTR 0.23 TCGA-VS-A8QC-01 9 79121801 79121801 C G GCNT1 3'UTR 0.45 TCGA-VS-A8QC-01 9 86924566 86924566 C G SLC28A3 Missense_Mutation p.D74H 0.26 tolerated(0.15) possibly_damaging(0.546) TCGA-VS-A8QC-01 9 91994447 91994447 C G SEMA4D Missense_Mutation p.W587C 0.06 deleterious(0) probably_damaging(1) TCGA-VS-A8QC-01 9 99246814 99246814 C G HABP4 Missense_Mutation p.Q300E 0.30 deleterious(0) probably_damaging(0.996) TCGA-VS-A8QC-01 X 103294871 103294871 G A H2BFM Missense_Mutation p.V110M 0.36 tolerated(0.07) benign(0.419) TCGA-VS-A8QC-01 X 128927767 128927767 G A SASH3 Missense_Mutation p.E368K 0.06 tolerated(0.22) benign(0.005) TCGA-VS-A8QC-01 X 138810164 138810164 C T ATP11C 3'UTR 0.36 TCGA-VS-A8QC-01 X 153587645 153587645 G C FLNA Silent p.L1424L 0.19 TCGA-VS-A8QC-01 X 153627875 153627875 G C RPL10 Missense_Mutation p.D44H 0.32 deleterious(0.03) benign(0.077) TCGA-VS-A8QC-01 X 17745068 17745068 C T NHS Missense_Mutation p.L927F 0.10 deleterious(0) probably_damaging(0.997) TCGA-VS-A8QC-01 X 18824637 18824637 A C PPEF1 Silent p.A456A 0.23 TCGA-VS-A8QC-01 X 29972720 29972720 G C IL1RAPL1 Missense_Mutation p.R428P 0.42 deleterious(0.02) possibly_damaging(0.862) TCGA-VS-A8QC-01 X 34645784 34645784 G A TMEM47 3'UTR 0.07 TCGA-VS-A8QC-01 X 49075132 49075132 C T CACNA1F Silent p.L943L 0.44 TCGA-VS-A8QC-01 X 51149941 51149941 G A CXorf67 Missense_Mutation p.E25K 0.30 tolerated(0.31) benign(0.001) TCGA-VS-A8QC-01 X 92964683 92964683 A - FAM133A Frame_Shift_Del p.R91Efs*67 0.19 TCGA-VS-A8QF-01 10 102849757 102849757 T C TLX1NB 5'UTR 0.20 TCGA-VS-A8QF-01 10 134147184 134147184 G C LRRC27 Missense_Mutation p.L52F 0.19 deleterious(0) possibly_damaging(0.86) TCGA-VS-A8QF-01 10 17746514 17746514 G C STAM Missense_Mutation p.E333Q 0.15 deleterious(0) probably_damaging(0.947) TCGA-VS-A8QF-01 10 22616933 22616933 T G BMI1 Missense_Mutation p.I124S 0.31 tolerated(0.07) benign(0.15) TCGA-VS-A8QF-01 10 26463113 26463113 C T MYO3A Missense_Mutation p.T1307I 0.14 tolerated_low_confidence(0.05) benign(0.006) TCGA-VS-A8QF-01 10 5040898 5040898 G A AKR1C2 Silent p.I163I 0.18 TCGA-VS-A8QF-01 10 75910765 75910765 G T AP3M1 5'UTR 0.18 TCGA-VS-A8QF-01 11 102984414 102984414 T C DYNC2H1 Missense_Mutation p.V115A 0.08 possibly_damaging(0.746) TCGA-VS-A8QF-01 11 105845060 105845060 G C GRIA4 Silent p.L811L 0.24 TCGA-VS-A8QF-01 11 1266038 1266038 G C MUC5B Missense_Mutation p.R2643T 0.15 unknown(0) TCGA-VS-A8QF-01 11 51516010 51516010 G A OR4C46 Silent p.T243T 0.22 TCGA-VS-A8QF-01 11 64664312 64664312 T C ATG2A Missense_Mutation p.Y1727C 0.21 deleterious(0) probably_damaging(0.976) TCGA-VS-A8QF-01 11 68566782 68566782 G C CPT1A Missense_Mutation p.F199L 0.09 deleterious(0) benign(0.15) TCGA-VS-A8QF-01 12 100492318 100492318 C T UHRF1BP1L Missense_Mutation p.E114K 0.18 deleterious(0.01) benign(0.128) TCGA-VS-A8QF-01 12 122964794 122964794 G C ZCCHC8 Silent p.L361L 0.14 TCGA-VS-A8QF-01 12 122964795 122964795 A T ZCCHC8 Missense_Mutation p.L361H 0.15 deleterious(0) possibly_damaging(0.625) TCGA-VS-A8QF-01 12 131357651 131357651 G A RAN Silent p.L75L 0.13 TCGA-VS-A8QF-01 12 42858956 42858956 G A PRICKLE1 Missense_Mutation p.L294F 0.26 deleterious(0) probably_damaging(1) TCGA-VS-A8QF-01 12 51142211 51142211 G C DIP2B 3'UTR 0.13 TCGA-VS-A8QF-01 12 53427646 53427646 G A EIF4B Missense_Mutation p.D346N 0.14 tolerated(0.31) probably_damaging(0.952) TCGA-VS-A8QF-01 12 56492632 56492632 G C ERBB3 Missense_Mutation p.E928Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QF-01 12 68054134 68054134 A G DYRK2 3'UTR 0.58 TCGA-VS-A8QF-01 12 93795826 93795826 G A NUDT4 3'UTR 0.27 TCGA-VS-A8QF-01 13 25670937 25670937 G C PABPC3 Missense_Mutation p.D201H 0.10 tolerated(0.06) possibly_damaging(0.473) TCGA-VS-A8QF-01 13 42142404 42142404 C T VWA8 Missense_Mutation p.A1883T 0.19 deleterious(0.02) possibly_damaging(0.796) TCGA-VS-A8QF-01 13 42390899 42390899 G A VWA8 Missense_Mutation p.P628S 0.40 tolerated(0.13) benign(0.059) TCGA-VS-A8QF-01 13 67800854 67800854 A G PCDH9 Silent p.T573T 0.44 TCGA-VS-A8QF-01 13 92101062 92101062 A G GPC5 Missense_Mutation p.R71G 0.10 deleterious(0) benign(0.297) TCGA-VS-A8QF-01 13 99339907 99339907 G T SLC15A1 Silent p.I585I 0.76 TCGA-VS-A8QF-01 14 101407482 101407482 C T SNORD113-7 RNA 0.26 TCGA-VS-A8QF-01 14 104641432 104641432 G A KIF26A Silent p.T769T 0.29 TCGA-VS-A8QF-01 14 21971690 21971690 C T METTL3 Missense_Mutation p.E117K 0.08 tolerated(0.47) benign(0.164) TCGA-VS-A8QF-01 14 51101814 51101814 T C SAV1 3'UTR 0.15 TCGA-VS-A8QF-01 14 88654353 88654353 G A KCNK10 Silent p.I323I 0.19 TCGA-VS-A8QF-01 14 93117993 93117993 G A RIN3 Missense_Mutation p.R200Q 0.22 tolerated(0.55) unknown(0) TCGA-VS-A8QF-01 15 42454230 42454230 C T VPS39 Silent p.R820R 0.22 TCGA-VS-A8QF-01 15 48500241 48500241 G A SLC12A1 Missense_Mutation p.V109I 0.18 tolerated(0.08) probably_damaging(0.991) TCGA-VS-A8QF-01 15 69745195 69745195 C T RPLP1 5'UTR 0.75 TCGA-VS-A8QF-01 15 76646367 76646367 C T SCAPER Missense_Mutation p.A1324T 0.71 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A8QF-01 15 78757685 78757685 C G IREB2 Missense_Mutation p.T122R 0.07 tolerated(0.07) probably_damaging(0.996) TCGA-VS-A8QF-01 15 82934794 82934794 C A GOLGA6L18 Missense_Mutation p.E262D 0.40 deleterious(0.01) unknown(0) TCGA-VS-A8QF-01 15 89760541 89760541 C A RLBP1 Silent p.L52L 0.16 TCGA-VS-A8QF-01 15 90171709 90171709 G A KIF7 Missense_Mutation p.R1325W 0.05 tolerated(0.07) benign(0.022) TCGA-VS-A8QF-01 15 93007443 93007443 C T ST8SIA2 Missense_Mutation p.P319L 0.16 benign(0.313) TCGA-VS-A8QF-01 16 30038009 30038009 G A FAM57B Missense_Mutation p.A122V 0.26 tolerated(1) benign(0.001) TCGA-VS-A8QF-01 16 46714750 46714750 T A VPS35 Silent p.T113T 0.12 TCGA-VS-A8QF-01 16 57003379 57003379 C T CETP Silent p.N105N 0.34 TCGA-VS-A8QF-01 16 57507860 57507860 C T DOK4 Missense_Mutation p.A231T 0.23 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QF-01 16 67697580 67697580 C T ENKD1 Silent p.Q241Q 0.18 TCGA-VS-A8QF-01 16 69187532 69187532 C T CIRH1A Nonsense_Mutation p.Q350* 0.19 TCGA-VS-A8QF-01 16 7762402 7762402 A - RBFOX1 3'UTR 0.16 TCGA-VS-A8QF-01 17 1451640 1451640 G A PITPNA Missense_Mutation p.A80V 0.50 deleterious(0) benign(0.153) TCGA-VS-A8QF-01 17 27277259 27277259 G C PHF12 Missense_Mutation p.I24M 0.12 deleterious(0) probably_damaging(0.974) TCGA-VS-A8QF-01 17 38721719 38721720 CT - CCR7 5'UTR 0.25 TCGA-VS-A8QF-01 17 39738688 39738688 C G KRT14 Nonstop_Mutation p.*473Sext*49 0.15 TCGA-VS-A8QF-01 17 39739925 39739925 C G KRT14 Missense_Mutation p.E311Q 0.08 deleterious(0.02) probably_damaging(0.944) TCGA-VS-A8QF-01 17 40369269 40369269 C T STAT5B Missense_Mutation p.R430H 0.19 deleterious(0.01) benign(0.17) TCGA-VS-A8QF-01 17 48431766 48431766 C G XYLT2 Intron 0.15 TCGA-VS-A8QF-01 17 56809902 56809902 C G RAD51C Missense_Mutation p.I341M 0.14 deleterious(0) probably_damaging(0.954) TCGA-VS-A8QF-01 17 7480149 7480149 C T EIF4A1 Intron 0.59 TCGA-VS-A8QF-01 18 11753858 11753858 C G GNAL Missense_Mutation p.P180A 0.20 deleterious(0.02) benign(0.248) TCGA-VS-A8QF-01 18 19449416 19449416 A G MIB1 3'UTR 0.43 TCGA-VS-A8QF-01 18 3135636 3135636 T G MYOM1 Missense_Mutation p.K706N 0.06 deleterious(0) probably_damaging(0.965) TCGA-VS-A8QF-01 18 5392569 5392569 A G EPB41L3 3'UTR 0.06 TCGA-VS-A8QF-01 18 70209078 70209078 G A CBLN2 Silent p.S106S 0.19 TCGA-VS-A8QF-01 19 10692172 10692172 G A AP1M2 Silent p.V179V 0.17 TCGA-VS-A8QF-01 19 13941561 13941561 G A ZSWIM4 Silent p.S889S 0.24 TCGA-VS-A8QF-01 19 17091480 17091480 T C CPAMD8 Missense_Mutation p.Y518C 0.28 tolerated(0.16) possibly_damaging(0.694) TCGA-VS-A8QF-01 19 21719228 21719228 C G ZNF429 Missense_Mutation p.L125V 0.11 tolerated(1) benign(0.01) TCGA-VS-A8QF-01 19 38702343 38702343 T - DPF1 3'UTR 0.31 TCGA-VS-A8QF-01 19 41825661 41825661 G A CCDC97 Missense_Mutation p.E229K 0.07 deleterious(0.01) benign(0.254) TCGA-VS-A8QF-01 19 43965909 43965909 C T LYPD3 Missense_Mutation p.S212N 0.08 deleterious(0.02) probably_damaging(0.986) TCGA-VS-A8QF-01 19 44679942 44679942 C T ZNF226 Missense_Mutation p.T176I 0.30 tolerated(0.41) benign(0.045) TCGA-VS-A8QF-01 19 52447995 52447995 T A ZNF613 Missense_Mutation p.S287T 0.10 deleterious(0) benign(0.027) TCGA-VS-A8QF-01 19 54967348 54967348 G A LENG8 Missense_Mutation p.D410N 0.32 tolerated(0.25) possibly_damaging(0.648) TCGA-VS-A8QF-01 19 58639901 58639901 A G ZNF329 Missense_Mutation p.F324L 0.12 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QF-01 1 112998562 112998562 G C CTTNBP2NL Missense_Mutation p.E150Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QF-01 1 112998592 112998592 G C CTTNBP2NL Missense_Mutation p.E160Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QF-01 1 11346174 11346174 C G UBIAD1 Missense_Mutation p.L335V 0.15 deleterious(0.01) possibly_damaging(0.887) TCGA-VS-A8QF-01 1 145304593 145304593 C G NBPF10 Nonsense_Mutation p.S509* 0.03 TCGA-VS-A8QF-01 1 152328585 152328585 A G FLG2 Silent p.Y559Y 0.19 TCGA-VS-A8QF-01 1 155186770 155186770 G A MTX1 3'Flank 0.04 TCGA-VS-A8QF-01 1 162829364 162829364 C T C1orf110 Missense_Mutation p.E25K 0.13 deleterious(0.01) benign(0.125) TCGA-VS-A8QF-01 1 181707535 181707535 C T CACNA1E Silent p.G1195G 0.10 TCGA-VS-A8QF-01 1 190067835 190067835 C T BRINP3 Silent p.K538K 0.19 TCGA-VS-A8QF-01 1 193149690 193149690 G A B3GALT2 Missense_Mutation p.R335C 0.11 deleterious(0) probably_damaging(0.982) TCGA-VS-A8QF-01 1 197111471 197111471 C G ASPM Missense_Mutation p.K637N 0.14 tolerated(0.07) benign(0.024) TCGA-VS-A8QF-01 1 197407832 197407832 G A CRB1 Intron 0.17 TCGA-VS-A8QF-01 1 213162362 213162362 T A VASH2 3'UTR 0.17 TCGA-VS-A8QF-01 1 231299721 231299721 G A TRIM67 Missense_Mutation p.E336K 0.08 deleterious(0) possibly_damaging(0.508) TCGA-VS-A8QF-01 1 237753125 237753125 C G RYR2 Missense_Mutation p.Q1211E 0.17 benign(0.432) TCGA-VS-A8QF-01 1 240775193 240775193 C T GREM2 5'UTR 0.16 TCGA-VS-A8QF-01 1 241958513 241958513 G A WDR64 Missense_Mutation p.R991Q 0.18 tolerated(0.29) benign(0.015) TCGA-VS-A8QF-01 1 243480089 243480089 C T SDCCAG8 Missense_Mutation p.S321F 0.49 deleterious(0) probably_damaging(0.978) TCGA-VS-A8QF-01 1 41326890 41326890 C T CITED4 3'UTR 0.10 TCGA-VS-A8QF-01 1 50661260 50661260 G A ELAVL4 Missense_Mutation p.R196H 0.11 deleterious(0.02) possibly_damaging(0.458) TCGA-VS-A8QF-01 1 71871723 71871723 C G NEGR1 3'UTR 0.14 TCGA-VS-A8QF-01 1 85484831 85484831 G C MCOLN3 Missense_Mutation p.S546C 0.09 tolerated(0.09) benign(0.008) TCGA-VS-A8QF-01 1 93812298 93812298 C T DR1 Silent p.A32A 0.10 TCGA-VS-A8QF-01 20 22562584 22562584 C T FOXA2 Silent p.P432P 0.11 TCGA-VS-A8QF-01 20 25059352 25059352 A T VSX1 Intron 0.17 TCGA-VS-A8QF-01 20 30358218 30358218 G C TPX2 Missense_Mutation p.K143N 0.04 tolerated(0.15) possibly_damaging(0.698) TCGA-VS-A8QF-01 20 34501190 34501190 G C PHF20 Missense_Mutation p.K527N 0.05 deleterious(0.03) benign(0.411) TCGA-VS-A8QF-01 20 36611968 36611968 G A TTI1 Nonsense_Mutation p.Q1054* 0.08 TCGA-VS-A8QF-01 20 55942112 55942112 G A RAE1 Missense_Mutation p.E171K 0.15 deleterious(0) probably_damaging(0.981) TCGA-VS-A8QF-01 21 11038734 11038734 G A BAGE2 RNA 0.10 TCGA-VS-A8QF-01 22 23165284 23165284 C T IGLV2-8 5'UTR 0.05 TCGA-VS-A8QF-01 22 42126536 42126536 G C MEI1 Missense_Mutation p.E331Q 0.12 deleterious(0) probably_damaging(0.991) TCGA-VS-A8QF-01 2 10104044 10104044 C G GRHL1 Nonsense_Mutation p.S259* 0.12 TCGA-VS-A8QF-01 2 116601740 116601740 G A DPP10 3'Flank 0.38 TCGA-VS-A8QF-01 2 120194828 120194828 A G TMEM37 Missense_Mutation p.I129V 0.19 tolerated(1) benign(0.002) TCGA-VS-A8QF-01 2 133542535 133542535 G A NCKAP5 Silent p.L617L 0.45 TCGA-VS-A8QF-01 2 141598498 141598498 G C LRP1B Missense_Mutation p.H1701Q 0.34 benign(0.227) TCGA-VS-A8QF-01 2 179664562 179664562 C T TTN Missense_Mutation p.R220Q 0.06 TCGA-VS-A8QF-01 2 203420682 203420682 C G BMPR2 Nonsense_Mutation p.S765* 0.10 TCGA-VS-A8QF-01 2 213866036 213866036 C G IKZF2 3'UTR 0.16 TCGA-VS-A8QF-01 2 215279155 215279155 C G VWC2L Missense_Mutation p.L80V 0.16 tolerated(0.15) benign(0.075) TCGA-VS-A8QF-01 2 216240361 216240361 C T FN1 Missense_Mutation p.A1990T 0.50 tolerated(0.11) probably_damaging(0.996) TCGA-VS-A8QF-01 2 224640653 224640653 G A AP1S3 Missense_Mutation p.R86C 0.39 deleterious(0) probably_damaging(1) TCGA-VS-A8QF-01 2 27601662 27601662 G A ZNF513 Silent p.F157F 0.08 TCGA-VS-A8QF-01 2 29258407 29258407 G A FAM179A Missense_Mutation p.R768Q 0.18 tolerated(0.07) benign(0.085) TCGA-VS-A8QF-01 2 86371460 86371460 C G IMMT Missense_Mutation p.Q736H 0.11 deleterious(0) probably_damaging(1) TCGA-VS-A8QF-01 3 119327658 119327658 G A PLA1A Missense_Mutation p.R106K 0.07 tolerated(0.55) benign(0.026) TCGA-VS-A8QF-01 3 134076386 134076386 G T AMOTL2 3'UTR 0.25 TCGA-VS-A8QF-01 3 155628636 155628636 C T GMPS Nonsense_Mutation p.R228* 0.10 TCGA-VS-A8QF-01 3 170727836 170727836 A C SLC2A2 Nonsense_Mutation p.L136* 0.08 TCGA-VS-A8QF-01 3 171453337 171453337 G A PLD1 Missense_Mutation p.H127Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QF-01 3 183480029 183480029 G A YEATS2 Missense_Mutation p.E637K 0.14 deleterious_low_confidence(0.01) benign(0.223) TCGA-VS-A8QF-01 3 36899394 36899394 C T TRANK1 Missense_Mutation p.V563M 0.09 tolerated(0.61) benign(0.004) TCGA-VS-A8QF-01 3 42661546 42661546 G A NKTR Intron 0.17 TCGA-VS-A8QF-01 3 47165759 47165759 T C SETD2 Missense_Mutation p.T123A 0.05 tolerated_low_confidence(0.41) benign(0.005) TCGA-VS-A8QF-01 3 49699822 49699822 G A BSN Missense_Mutation p.R3515H 0.19 unknown(0) TCGA-VS-A8QF-01 3 53275181 53275181 C A TKT Missense_Mutation p.K102N 0.12 deleterious(0.02) possibly_damaging(0.834) TCGA-VS-A8QF-01 3 58619989 58619989 G T FAM3D 3'UTR 0.21 TCGA-VS-A8QF-01 3 98216768 98216768 T C OR5K2 Silent p.L82L 0.15 TCGA-VS-A8QF-01 4 114280260 114280260 G C ANK2 Missense_Mutation p.E3496Q 0.10 probably_damaging(0.959) TCGA-VS-A8QF-01 4 126371211 126371211 G T FAT4 Nonsense_Mutation p.G3014* 0.17 TCGA-VS-A8QF-01 4 17654594 17654594 G A FAM184B Missense_Mutation p.R684C 0.26 deleterious(0.04) benign(0.112) TCGA-VS-A8QF-01 4 39824659 39824659 C T PDS5A 3'UTR 0.30 TCGA-VS-A8QF-01 4 41496621 41496621 C T LIMCH1 Silent p.C55C 0.22 TCGA-VS-A8QF-01 4 47455167 47455167 A C COMMD8 Missense_Mutation p.V147G 0.33 deleterious(0) possibly_damaging(0.903) TCGA-VS-A8QF-01 4 89576342 89576342 C T HERC3 Silent p.T265T 0.21 TCGA-VS-A8QF-01 5 149933804 149933804 T C NDST1 3'UTR 0.11 TCGA-VS-A8QF-01 5 150138603 150138603 G C DCTN4 5'Flank 0.27 TCGA-VS-A8QF-01 5 179041385 179041385 G A HNRNPH1 3'UTR 0.09 TCGA-VS-A8QF-01 5 180670716 180670716 C G GNB2L1 Missense_Mutation p.D29H 0.13 deleterious(0) probably_damaging(0.953) TCGA-VS-A8QF-01 5 32089355 32089355 G A PDZD2 Missense_Mutation p.R1934Q 0.19 tolerated(0.19) benign(0.018) TCGA-VS-A8QF-01 5 3599603 3599603 G A IRX1 Missense_Mutation p.A181T 0.08 deleterious(0) probably_damaging(0.989) TCGA-VS-A8QF-01 6 111694841 111694841 G A REV3L Missense_Mutation p.R1573W 0.14 deleterious(0.01) possibly_damaging(0.591) TCGA-VS-A8QF-01 6 112476103 112476103 C G LAMA4 Missense_Mutation p.S669T 0.19 deleterious(0) possibly_damaging(0.793) TCGA-VS-A8QF-01 6 30688285 30688285 T G TUBB Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-VS-A8QF-01 6 31830456 31830456 G A NEU1 Missense_Mutation p.A33V 0.10 tolerated(0.39) benign(0.002) TCGA-VS-A8QF-01 6 39873630 39873630 C T MOCS1 3'UTR 0.33 TCGA-VS-A8QF-01 6 42979637 42979637 G A PPP2R5D 3'UTR 0.11 TCGA-VS-A8QF-01 6 71566587 71566587 C A SMAP1 Missense_Mutation p.A272E 0.15 tolerated(0.12) benign(0.06) TCGA-VS-A8QF-01 7 127255353 127255353 G A PAX4 Intron 0.21 TCGA-VS-A8QF-01 7 141969440 141969440 C T U66059.29 RNA 0.11 TCGA-VS-A8QF-01 7 149129559 149129559 A G ZNF777 Missense_Mutation p.C602R 0.17 tolerated(0.34) benign(0.01) TCGA-VS-A8QF-01 7 149171931 149171931 G A ZNF746 Silent p.G494G 0.43 TCGA-VS-A8QF-01 7 31380362 31380362 A T NEUROD6 5'UTR 0.26 TCGA-VS-A8QF-01 7 37960942 37960942 C T EPDR1 Intron 0.18 TCGA-VS-A8QF-01 8 106815582 106815582 C T ZFPM2 Missense_Mutation p.S1091L 0.30 deleterious(0) possibly_damaging(0.873) TCGA-VS-A8QF-01 8 113418807 113418807 C T CSMD3 Missense_Mutation p.E1919K 0.12 tolerated(0.9) benign(0.201) TCGA-VS-A8QF-01 8 145755908 145755908 G A ARHGAP39 Silent p.S1081S 0.28 TCGA-VS-A8QF-01 8 54900773 54900773 G A TCEA1 Nonsense_Mutation p.R123* 0.24 TCGA-VS-A8QF-01 8 57083659 57083659 G C PLAG1 5'UTR 0.22 TCGA-VS-A8QF-01 8 8643366 8643366 C G MFHAS1 3'UTR 0.21 TCGA-VS-A8QF-01 8 95952140 95952140 G A TP53INP1 Missense_Mutation p.L141F 0.16 deleterious(0.02) possibly_damaging(0.517) TCGA-VS-A8QF-01 9 112932546 112932546 T A PALM2-AKAP2 3'UTR 0.18 TCGA-VS-A8QF-01 9 129377844 129377844 C T LMX1B Nonsense_Mutation p.Q108* 0.18 TCGA-VS-A8QF-01 9 130428540 130428540 T - STXBP1 Frame_Shift_Del p.Y254Mfs*23 0.20 TCGA-VS-A8QF-01 9 137671954 137671954 G A COL5A1 Missense_Mutation p.D798N 0.30 unknown(0) TCGA-VS-A8QF-01 9 35685768 35685768 C A TPM2 Missense_Mutation p.D84Y 0.18 deleterious(0) possibly_damaging(0.834) TCGA-VS-A8QF-01 9 99252433 99252433 T C HABP4 3'UTR 0.12 TCGA-VS-A8QF-01 X 134232326 134232326 C A LINC00087 RNA 0.10 TCGA-VS-A8QF-01 X 136113161 136113161 G A GPR101 Silent p.L225L 0.16 TCGA-VS-A8QF-01 X 147019116 147019116 G A FMR1 Silent p.Q374Q 0.06 TCGA-VS-A8QF-01 X 153292272 153292272 C T MECP2 3'Flank 0.47 TCGA-VS-A8QF-01 X 26212473 26212473 C T MAGEB6 Silent p.A170A 0.22 TCGA-VS-A8QF-01 X 49083112 49083112 G A CACNA1F Silent p.F454F 0.07 TCGA-VS-A8QF-01 X 70521921 70521921 G A ITGB1BP2 Intron 0.10 TCGA-VS-A8QF-01 X 96136623 96136623 G C DIAPH2 Missense_Mutation p.E165Q 0.09 deleterious(0.04) unknown(0) TCGA-VS-A8QH-01 10 101591511 101591511 C T ABCC2 Silent p.I1009I 0.42 TCGA-VS-A8QH-01 10 108489844 108489844 C A SORCS1 Missense_Mutation p.D330Y 0.26 deleterious(0) probably_damaging(0.987) TCGA-VS-A8QH-01 10 120833025 120833025 T C EIF3A Missense_Mutation p.E102G 0.38 deleterious(0.01) unknown(0) TCGA-VS-A8QH-01 10 298775 298775 C A ZMYND11 3'UTR 0.12 TCGA-VS-A8QH-01 10 6470302 6470302 T C PRKCQ Missense_Mutation p.N663S 0.09 deleterious(0) probably_damaging(0.99) TCGA-VS-A8QH-01 10 70051980 70051980 G A PBLD Missense_Mutation p.T100M 0.23 deleterious(0.04) benign(0.054) TCGA-VS-A8QH-01 11 113661206 113661206 C T ATF4P4 RNA 0.25 TCGA-VS-A8QH-01 11 47819964 47819964 C A NUP160 Missense_Mutation p.A983S 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-VS-A8QH-01 11 487455 487455 T G PTDSS2 Silent p.L202L 0.40 TCGA-VS-A8QH-01 11 55038032 55038032 A C TRIM48 3'UTR 0.15 TCGA-VS-A8QH-01 11 55944161 55944161 T G OR5J2 Missense_Mutation p.L23R 0.38 deleterious(0.01) probably_damaging(0.91) TCGA-VS-A8QH-01 11 57156117 57156117 C T PRG2 Missense_Mutation p.R144Q 0.31 tolerated(0.8) benign(0.005) TCGA-VS-A8QH-01 11 5719562 5719562 G A TRIM22 Silent p.E179E 0.39 TCGA-VS-A8QH-01 11 62483376 62483376 G A HNRNPUL2 Missense_Mutation p.A672V 0.46 tolerated(0.41) benign(0.028) TCGA-VS-A8QH-01 11 8083675 8083675 G A TUB Intron 0.38 TCGA-VS-A8QH-01 11 94278371 94278371 G C FUT4 Missense_Mutation p.A358P 0.09 deleterious(0) probably_damaging(0.991) TCGA-VS-A8QH-01 12 109893989 109893989 C G KCTD10 Missense_Mutation p.Q219H 0.24 tolerated(0.54) probably_damaging(0.921) TCGA-VS-A8QH-01 12 117681146 117681146 T A NOS1 Missense_Mutation p.K1007M 0.32 deleterious(0) probably_damaging(0.939) TCGA-VS-A8QH-01 12 132681191 132681191 A G GALNT9 3'UTR 0.19 TCGA-VS-A8QH-01 12 176167 176167 A G IQSEC3 Missense_Mutation p.E40G 0.35 deleterious(0) probably_damaging(0.969) TCGA-VS-A8QH-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.19 deleterious(0.04) possibly_damaging(0.506) TCGA-VS-A8QH-01 12 40034769 40034769 G C C12orf40 Silent p.L12L 0.18 TCGA-VS-A8QH-01 12 52404700 52404700 C A GRASP Missense_Mutation p.T111N 0.28 deleterious(0) probably_damaging(0.958) TCGA-VS-A8QH-01 12 64697461 64697461 T G C12orf56 Missense_Mutation p.K196T 0.12 deleterious(0) possibly_damaging(0.57) TCGA-VS-A8QH-01 12 68836 68836 C T RP11-598F7.1 RNA 0.29 TCGA-VS-A8QH-01 12 85449924 85449924 A G LRRIQ1 Silent p.V451V 0.25 TCGA-VS-A8QH-01 12 86199561 86199561 T C RASSF9 Missense_Mutation p.D76G 0.23 tolerated(0.18) possibly_damaging(0.535) TCGA-VS-A8QH-01 13 102375206 102375206 G T FGF14 Missense_Mutation p.P245Q 0.44 tolerated(0.12) possibly_damaging(0.738) TCGA-VS-A8QH-01 13 103387936 103387936 T G CCDC168 Missense_Mutation p.L408F 0.23 tolerated(0.21) possibly_damaging(0.765) TCGA-VS-A8QH-01 13 110802076 110802077 - A COL4A1 3'UTR 0.23 TCGA-VS-A8QH-01 13 110802078 110802079 - C COL4A1 3'UTR 0.24 TCGA-VS-A8QH-01 13 114839252 114839252 G A RASA3 Missense_Mutation p.T39M 0.51 deleterious(0) probably_damaging(0.956) TCGA-VS-A8QH-01 13 46170912 46170912 C G FAM194B Missense_Mutation p.E77Q 0.56 tolerated(0.39) unknown(0) TCGA-VS-A8QH-01 13 53608520 53608520 G A OLFM4 Missense_Mutation p.G81E 0.34 deleterious(0.03) probably_damaging(0.984) TCGA-VS-A8QH-01 13 77751961 77751961 A C MYCBP2 Silent p.P1716P 0.20 TCGA-VS-A8QH-01 13 98043998 98043998 G T MBNL2 3'UTR 0.19 TCGA-VS-A8QH-01 14 19377781 19377781 T C OR11H12 Missense_Mutation p.V63A 0.29 tolerated(1) benign(0) TCGA-VS-A8QH-01 14 39736722 39736722 G T CTAGE5 Missense_Mutation p.R20L 0.47 tolerated(0.07) benign(0.446) TCGA-VS-A8QH-01 15 41806017 41806017 G T LTK 5'Flank 0.36 TCGA-VS-A8QH-01 15 70959148 70959148 C T UACA Missense_Mutation p.R1292Q 0.56 deleterious(0) possibly_damaging(0.884) TCGA-VS-A8QH-01 15 83218332 83218332 G A CPEB1 Missense_Mutation p.T426M 0.53 deleterious(0) probably_damaging(1) TCGA-VS-A8QH-01 15 90771390 90771390 G C SEMA4B Missense_Mutation p.D677H 0.28 tolerated(0.18) possibly_damaging(0.734) TCGA-VS-A8QH-01 16 28848403 28848403 C G ATXN2L 3'UTR 0.05 TCGA-VS-A8QH-01 16 32265986 32265986 C T TP53TG3D Intron 0.23 TCGA-VS-A8QH-01 16 4861173 4861173 C T GLYR1 Missense_Mutation p.E529K 0.34 deleterious(0) benign(0.06) TCGA-VS-A8QH-01 16 54966690 54966690 T C IRX5 Missense_Mutation p.M177T 0.17 deleterious(0) probably_damaging(0.942) TCGA-VS-A8QH-01 16 55730203 55730203 C T SLC6A2 Missense_Mutation p.A405V 0.25 deleterious(0.02) possibly_damaging(0.786) TCGA-VS-A8QH-01 16 71885274 71885274 C T ATXN1L Missense_Mutation p.P544L 0.46 deleterious(0) probably_damaging(1) TCGA-VS-A8QH-01 16 77356310 77356311 - A ADAMTS18 Frame_Shift_Ins p.A696Cfs*18 0.35 TCGA-VS-A8QH-01 16 81161404 81161404 G A PKD1L2 RNA 0.18 TCGA-VS-A8QH-01 16 81745021 81745021 C A CMIP 3'UTR 0.34 TCGA-VS-A8QH-01 16 984356 984356 G A LMF1 Intron 0.18 TCGA-VS-A8QH-01 17 15965543 15965543 G A NCOR1 Missense_Mutation p.R1755C 0.20 probably_damaging(0.997) TCGA-VS-A8QH-01 17 38547810 38547810 A T TOP2A Silent p.I1405I 0.25 TCGA-VS-A8QH-01 17 617943 617943 C G VPS53 Missense_Mutation p.E3Q 0.38 tolerated_low_confidence(0.13) unknown(0) TCGA-VS-A8QH-01 17 7578440 7578440 T C TP53 Missense_Mutation p.K164E 0.56 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QH-01 18 47013767 47013767 G C RPL17-C18orf32 Intron 0.29 TCGA-VS-A8QH-01 18 56165306 56165306 C T ALPK2 Missense_Mutation p.V2091I 0.38 deleterious(0.03) possibly_damaging(0.775) TCGA-VS-A8QH-01 18 9281985 9281985 A C ANKRD12 3'UTR 0.09 TCGA-VS-A8QH-01 19 37383302 37383302 G A ZNF829 Missense_Mutation p.R212C 0.21 tolerated(0.29) benign(0.017) TCGA-VS-A8QH-01 19 37482676 37482676 G A ZNF568 Missense_Mutation p.V121M 0.43 deleterious(0.04) probably_damaging(0.995) TCGA-VS-A8QH-01 19 41601989 41601989 C A CYP2A13 3'UTR 0.33 TCGA-VS-A8QH-01 19 50164093 50164093 C T IRF3 Missense_Mutation p.A331T 0.17 deleterious(0.04) benign(0.133) TCGA-VS-A8QH-01 19 52794240 52794240 C T ZNF766 Missense_Mutation p.A399V 0.18 tolerated(0.26) probably_damaging(0.981) TCGA-VS-A8QH-01 19 52887118 52887118 G T ZNF880 Missense_Mutation p.L95F 0.28 tolerated(0.7) probably_damaging(0.944) TCGA-VS-A8QH-01 19 55449565 55449565 C T NLRP7 Missense_Mutation p.R659H 0.44 tolerated(1) benign(0.001) TCGA-VS-A8QH-01 19 57134345 57134345 A C ZNF71 3'UTR 0.16 TCGA-VS-A8QH-01 19 58452744 58452744 G C ZNF256 Missense_Mutation p.L478V 0.13 deleterious(0) benign(0.424) TCGA-VS-A8QH-01 19 6755127 6755127 G A SH2D3A Silent p.C232C 0.27 TCGA-VS-A8QH-01 1 111033655 111033655 G T RP11-470L19.2 5'Flank 0.23 TCGA-VS-A8QH-01 1 118535155 118535155 C T SPAG17 Missense_Mutation p.M1765I 0.38 tolerated(1) benign(0.002) TCGA-VS-A8QH-01 1 1190143 1190143 C T UBE2J2 3'Flank 0.24 TCGA-VS-A8QH-01 1 149287924 149287924 T G RP11-403I13.8 RNA 0.06 TCGA-VS-A8QH-01 1 152187462 152187462 C T HRNR Missense_Mutation p.E2215K 0.09 unknown(0) TCGA-VS-A8QH-01 1 158627302 158627302 T C SPTA1 Missense_Mutation p.N924D 0.23 tolerated(0.05) possibly_damaging(0.771) TCGA-VS-A8QH-01 1 175335015 175335015 G C TNR Missense_Mutation p.F771L 0.40 tolerated(0.09) possibly_damaging(0.666) TCGA-VS-A8QH-01 1 180854373 180854373 T G XPR1 3'UTR 0.44 TCGA-VS-A8QH-01 1 181144541 181144541 A G RP11-540K16.1 RNA 0.31 TCGA-VS-A8QH-01 1 196398809 196398809 C T KCNT2 Silent p.T239T 0.27 TCGA-VS-A8QH-01 1 23408840 23408840 C G KDM1A Missense_Mutation p.S809W 0.26 deleterious(0) possibly_damaging(0.734) TCGA-VS-A8QH-01 1 247737517 247737517 T A GCSAML Missense_Mutation p.S81T 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-VS-A8QH-01 1 42898872 42898872 G T ZMYND12 Missense_Mutation p.T306N 0.29 tolerated(0.11) benign(0.235) TCGA-VS-A8QH-01 1 63307143 63307143 G T ATG4C Missense_Mutation p.M378I 0.31 deleterious(0) probably_damaging(0.998) TCGA-VS-A8QH-01 1 9790523 9790523 C A CLSTN1 3'UTR 0.16 TCGA-VS-A8QH-01 20 1460584 1460584 A G SIRPB2 Missense_Mutation p.I71T 0.22 tolerated(0.08) possibly_damaging(0.834) TCGA-VS-A8QH-01 20 30064539 30064539 C A REM1 Silent p.A97A 0.17 TCGA-VS-A8QH-01 20 30253138 30253138 A C BCL2L1 3'UTR 0.21 TCGA-VS-A8QH-01 20 31996351 31996351 G T SNTA1 Missense_Mutation p.L494M 0.21 deleterious(0) possibly_damaging(0.905) TCGA-VS-A8QH-01 20 3649294 3649294 C G ADAM33 3'UTR 0.25 TCGA-VS-A8QH-01 20 49354583 49354583 A G PARD6B Missense_Mutation p.N86D 0.13 tolerated(0.06) benign(0.094) TCGA-VS-A8QH-01 21 10944785 10944785 C T TPTE Missense_Mutation p.R150K 0.19 tolerated(0.33) benign(0.017) TCGA-VS-A8QH-01 21 47421259 47421259 G A COL6A1 Missense_Mutation p.V639I 0.18 tolerated(1) benign(0.035) TCGA-VS-A8QH-01 22 30069257 30069257 G T NF2 Splice_Site p.X375_splice 0.50 TCGA-VS-A8QH-01 22 38516767 38516767 T C PLA2G6 Missense_Mutation p.K581E 0.46 deleterious(0) probably_damaging(0.973) TCGA-VS-A8QH-01 22 40283490 40283490 T G ENTHD1 Missense_Mutation p.K88T 0.32 deleterious(0.01) possibly_damaging(0.715) TCGA-VS-A8QH-01 2 109383750 109383750 C G RANBP2 Missense_Mutation p.P2252R 0.04 deleterious(0.04) possibly_damaging(0.614) TCGA-VS-A8QH-01 2 155555341 155555341 G A KCNJ3 Silent p.S18S 0.32 TCGA-VS-A8QH-01 2 159107369 159107369 G A CCDC148 Missense_Mutation p.S389F 0.18 deleterious(0) probably_damaging(0.919) TCGA-VS-A8QH-01 2 159516910 159516910 C T PKP4 Intron 0.21 TCGA-VS-A8QH-01 2 190656639 190656639 C T PMS1 Missense_Mutation p.A35V 0.06 deleterious(0) probably_damaging(1) TCGA-VS-A8QH-01 2 197654086 197654086 T C GTF3C3 Silent p.K245K 0.33 TCGA-VS-A8QH-01 2 219229470 219229470 C T C2orf62 Silent p.S250S 0.28 TCGA-VS-A8QH-01 2 223158980 223158980 T C PAX3 Silent p.K164K 0.18 TCGA-VS-A8QH-01 2 238283159 238283159 C T COL6A3 Missense_Mutation p.R1192H 0.38 benign(0.038) TCGA-VS-A8QH-01 2 238601007 238601007 C T LRRFIP1 5'UTR 0.28 TCGA-VS-A8QH-01 2 56108845 56108845 G A EFEMP1 Missense_Mutation p.T181M 0.29 tolerated(0.14) benign(0.075) TCGA-VS-A8QH-01 2 70674617 70674617 A G TGFA 3'UTR 0.35 TCGA-VS-A8QH-01 2 89442168 89442168 G A IGKV3-20 Silent p.I79I 0.15 TCGA-VS-A8QH-01 3 107474490 107474490 C T BBX Missense_Mutation p.R291C 0.30 tolerated(0.21) probably_damaging(0.999) TCGA-VS-A8QH-01 3 142232429 142232429 T A ATR Nonsense_Mutation p.K1519* 0.43 TCGA-VS-A8QH-01 3 35726291 35726291 T A ARPP21 Intron 0.12 TCGA-VS-A8QH-01 3 37032585 37032586 - A EPM2AIP1 3'UTR 0.30 TCGA-VS-A8QH-01 3 44345572 44345572 A T TOPAZ1 Missense_Mutation p.E1288V 0.16 deleterious(0) possibly_damaging(0.888) TCGA-VS-A8QH-01 3 47270110 47270110 G A KIF9 3'UTR 0.11 TCGA-VS-A8QH-01 3 49899727 49899727 G T CAMKV Missense_Mutation p.T32N 0.48 deleterious(0.01) possibly_damaging(0.884) TCGA-VS-A8QH-01 3 52521791 52521791 T A NISCH Missense_Mutation p.F761L 0.15 tolerated(1) benign(0.002) TCGA-VS-A8QH-01 3 62518628 62518628 G A CADPS Missense_Mutation p.R737W 0.32 deleterious(0.01) possibly_damaging(0.689) TCGA-VS-A8QH-01 3 77656983 77656983 C G ROBO2 Missense_Mutation p.N1073K 0.27 tolerated(0.51) benign(0.403) TCGA-VS-A8QH-01 3 86990609 86990609 T A VGLL3 3'UTR 0.38 TCGA-VS-A8QH-01 4 106161229 106161229 C A TET2 Intron 0.41 TCGA-VS-A8QH-01 4 108870562 108870562 G C CYP2U1 Missense_Mutation p.V449L 0.38 deleterious(0.01) benign(0.12) TCGA-VS-A8QH-01 4 121956835 121956835 C A NDNF 3'UTR 0.16 TCGA-VS-A8QH-01 4 153244211 153244211 C T FBXW7 Nonsense_Mutation p.W649* 0.26 TCGA-VS-A8QH-01 4 17845829 17845829 A G NCAPG 3'UTR 0.36 TCGA-VS-A8QH-01 4 189064971 189064971 T G TRIML1 Intron 0.25 TCGA-VS-A8QH-01 4 39826409 39826409 A T PDS5A 3'UTR 0.38 TCGA-VS-A8QH-01 4 40440716 40440716 C T RBM47 Silent p.P65P 0.36 TCGA-VS-A8QH-01 4 48584588 48584588 C T FRYL Missense_Mutation p.V638I 0.10 tolerated(0.07) possibly_damaging(0.582) TCGA-VS-A8QH-01 4 72434227 72434227 T - SLC4A4 3'UTR 0.13 TCGA-VS-A8QH-01 4 73986690 73986690 T A ANKRD17 Missense_Mutation p.N1253Y 0.16 possibly_damaging(0.798) TCGA-VS-A8QH-01 5 1216802 1216802 G A SLC6A19 Splice_Site p.X339_splice 0.18 TCGA-VS-A8QH-01 5 127594734 127594734 A G FBN2 3'UTR 0.31 TCGA-VS-A8QH-01 5 13830143 13830143 A G DNAH5 Silent p.L2081L 0.32 TCGA-VS-A8QH-01 5 140167617 140167617 T C PCDHA1 Missense_Mutation p.V581A 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.757) TCGA-VS-A8QH-01 5 1403130 1403130 G A SLC6A3 Silent p.N558N 0.44 TCGA-VS-A8QH-01 5 156191598 156191598 T C SGCD 3'Flank 0.32 TCGA-VS-A8QH-01 5 167689408 167689408 C T TENM2 Missense_Mutation p.R2640C 0.37 deleterious(0.01) probably_damaging(0.931) TCGA-VS-A8QH-01 5 169127031 169127031 C A DOCK2 Silent p.T382T 0.41 TCGA-VS-A8QH-01 5 32786703 32786703 A T NPR3 3'UTR 0.18 TCGA-VS-A8QH-01 5 37815950 37815950 C T GDNF Missense_Mutation p.G164S 0.20 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QH-01 5 38959918 38959918 C A RICTOR Nonsense_Mutation p.G672* 0.26 TCGA-VS-A8QH-01 5 56176540 56176540 G A MAP3K1 Missense_Mutation p.R697H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A8QH-01 5 59893231 59893231 G T DEPDC1B 3'UTR 0.22 TCGA-VS-A8QH-01 5 63871671 63871671 T C RGS7BP Missense_Mutation p.Y135H 0.14 deleterious(0) unknown(0) TCGA-VS-A8QH-01 5 65288724 65288724 G T ERBB2IP Nonsense_Mutation p.E60* 0.21 TCGA-VS-A8QH-01 5 65288725 65288725 A T ERBB2IP Missense_Mutation p.E60V 0.21 deleterious(0) probably_damaging(0.998) TCGA-VS-A8QH-01 5 7863012 7863012 C G FASTKD3 Missense_Mutation p.K541N 0.31 tolerated(0.09) possibly_damaging(0.756) TCGA-VS-A8QH-01 5 93788698 93788698 A G KIAA0825 Missense_Mutation p.S775P 0.41 tolerated(0.08) probably_damaging(0.982) TCGA-VS-A8QH-01 6 102503441 102503441 G A GRIK2 Missense_Mutation p.A850T 0.26 tolerated(0.09) possibly_damaging(0.667) TCGA-VS-A8QH-01 6 117609672 117609672 C T ROS1 Missense_Mutation p.G2343R 0.18 tolerated_low_confidence(0.09) benign(0.194) TCGA-VS-A8QH-01 6 122734715 122734715 T A HSF2 Missense_Mutation p.L126I 0.33 tolerated(0.07) possibly_damaging(0.456) TCGA-VS-A8QH-01 6 122734717 122734717 A C HSF2 Missense_Mutation p.L126F 0.33 deleterious(0) probably_damaging(0.964) TCGA-VS-A8QH-01 6 129371093 129371093 C T LAMA2 Missense_Mutation p.S48F 0.14 deleterious(0) possibly_damaging(0.908) TCGA-VS-A8QH-01 6 149395408 149395408 C T UST 3'UTR 0.39 TCGA-VS-A8QH-01 6 161966448 161966448 A G PARK2 Intron 0.44 TCGA-VS-A8QH-01 6 26546008 26546008 G A HMGN4 3'UTR 0.07 TCGA-VS-A8QH-01 6 27925449 27925449 T G OR2B6 Missense_Mutation p.L144W 0.35 deleterious(0) probably_damaging(0.987) TCGA-VS-A8QH-01 6 41737940 41737940 A G FRS3 3'UTR 0.31 TCGA-VS-A8QH-01 6 49936481 49936481 T G DEFB113 Missense_Mutation p.Y53S 0.14 deleterious_low_confidence(0.01) benign(0.018) TCGA-VS-A8QH-01 7 149502586 149502586 G A SSPO RNA 0.40 TCGA-VS-A8QH-01 7 44113449 44113449 C A POLM Missense_Mutation p.R416I 0.22 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QH-01 7 4899297 4899297 T C PAPOLB 3'UTR 0.14 TCGA-VS-A8QH-01 7 5645046 5645046 G A FSCN1 Missense_Mutation p.A475T 0.17 tolerated(0.06) probably_damaging(0.998) TCGA-VS-A8QH-01 7 62809642 62809642 C T AC006455.1 5'UTR 0.18 TCGA-VS-A8QH-01 7 70231114 70231114 C T AUTS2 Nonsense_Mutation p.R495* 0.37 TCGA-VS-A8QH-01 7 78636481 78636481 G A MAGI2 Nonsense_Mutation p.R115* 0.22 TCGA-VS-A8QH-01 8 101078489 101078489 T C RGS22 Silent p.L210L 0.31 TCGA-VS-A8QH-01 8 105026760 105026760 A T RIMS2 Missense_Mutation p.Q1084L 0.30 tolerated_low_confidence(0.14) benign(0.005) TCGA-VS-A8QH-01 8 40532420 40532420 C T ZMAT4 Missense_Mutation p.R127Q 0.27 tolerated(0.57) benign(0.034) TCGA-VS-A8QH-01 8 41571752 41571752 G A ANK1 Silent p.H607H 0.15 TCGA-VS-A8QH-01 8 48776051 48776051 C G PRKDC Missense_Mutation p.D1886H 0.18 benign(0.093) TCGA-VS-A8QH-01 8 59496589 59496589 A T NSMAF 3'UTR 0.31 TCGA-VS-A8QH-01 8 98289903 98289903 G A TSPYL5 Missense_Mutation p.A57V 0.50 tolerated(0.07) possibly_damaging(0.75) TCGA-VS-A8QH-01 9 117002740 117002740 G A COL27A1 Silent p.P936P 0.33 TCGA-VS-A8QH-01 9 135975689 135975689 G T RALGDS Missense_Mutation p.D845E 0.27 tolerated(0.21) unknown(0) TCGA-VS-A8QH-01 9 17332622 17332622 C A CNTLN Nonsense_Mutation p.S513* 0.25 TCGA-VS-A8QH-01 9 32481407 32481407 G T DDX58 Missense_Mutation p.F523L 0.36 tolerated(1) benign(0.001) TCGA-VS-A8QH-01 9 72741249 72741249 A C MAMDC2 Missense_Mutation p.E273A 0.18 deleterious(0) probably_damaging(0.944) TCGA-VS-A8QH-01 X 105153854 105153854 G C NRK Missense_Mutation p.E742Q 0.16 tolerated(0.17) benign(0.023) TCGA-VS-A8QH-01 X 105921435 105921435 A T CXorf57 Missense_Mutation p.N839Y 0.43 deleterious(0) probably_damaging(0.912) TCGA-VS-A8QH-01 X 108885726 108885726 A G ACSL4 3'UTR 0.18 TCGA-VS-A8QH-01 X 122551331 122551331 A C GRIA3 Missense_Mutation p.S527R 0.20 deleterious(0) probably_damaging(0.969) TCGA-VS-A8QH-01 X 132090913 132090913 G A HS6ST2 Silent p.H290H 0.13 TCGA-VS-A8QH-01 X 155007341 155007341 T G SPRY3 3'UTR 0.33 TCGA-VS-A8QH-01 X 16171115 16171115 G T GRPR 3'UTR 0.39 TCGA-VS-A8QH-01 X 20043954 20043954 G A MAP7D2 Missense_Mutation p.A375V 0.24 deleterious(0) probably_damaging(0.988) TCGA-VS-A8QH-01 X 24231879 24231880 - T ZFX 3'UTR 0.12 TCGA-VS-A8QH-01 X 2828711 2828711 C A ARSD Missense_Mutation p.G375V 0.18 deleterious(0) probably_damaging(0.989) TCGA-VS-A8QH-01 X 30849230 30849230 G C TAB3 3'UTR 0.14 TCGA-VS-A8QH-01 X 48762742 48762742 C A SLC35A2 Missense_Mutation p.K148N 0.18 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QH-01 X 49642934 49642934 T C USP27X 5'Flank 0.20 TCGA-VS-A8QH-01 X 54471932 54471933 - C FGD1 3'UTR 0.19 TCGA-VS-A8QM-01 10 120810789 120810789 C G EIF3A Missense_Mutation p.K747N 0.11 deleterious(0) unknown(0) TCGA-VS-A8QM-01 10 13698988 13698988 G A FRMD4A Silent p.F867F 0.11 TCGA-VS-A8QM-01 10 21804330 21804330 G A SKIDA1 Missense_Mutation p.R808C 0.08 deleterious(0) unknown(0) TCGA-VS-A8QM-01 10 44866635 44866635 G C CXCL12 3'UTR 0.23 TCGA-VS-A8QM-01 10 68685814 68685814 G A LRRTM3 5'UTR 0.17 TCGA-VS-A8QM-01 10 70218973 70218973 G C DNA2 Missense_Mutation p.Q289E 0.07 tolerated(0.4) benign(0.024) TCGA-VS-A8QM-01 10 82280496 82280496 C T TSPAN14 3'UTR 0.20 TCGA-VS-A8QM-01 10 90673056 90673056 G T STAMBPL1 Missense_Mutation p.D207Y 0.15 deleterious(0.01) benign(0.06) TCGA-VS-A8QM-01 11 118980835 118980835 G C C2CD2L Missense_Mutation p.E126Q 0.06 tolerated(0.06) possibly_damaging(0.812) TCGA-VS-A8QM-01 11 16117544 16117544 C A SOX6 Nonsense_Mutation p.E367* 0.19 TCGA-VS-A8QM-01 11 27678035 27678035 G A BDNF 3'UTR 0.11 TCGA-VS-A8QM-01 11 58275223 58275223 T C OR5B21 Missense_Mutation p.D119G 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VS-A8QM-01 11 5841718 5841718 C T OR52N2 Silent p.I51I 0.22 TCGA-VS-A8QM-01 11 62761264 62761264 C T SLC22A8 Missense_Mutation p.E435K 0.32 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 11 64564174 64564174 C - MAP4K2 Frame_Shift_Del p.V502Wfs*2 0.16 TCGA-VS-A8QM-01 11 6891681 6891681 C A OR10A2 Silent p.L232L 0.11 TCGA-VS-A8QM-01 12 49169866 49169866 C T ADCY6 Silent p.E562E 0.16 TCGA-VS-A8QM-01 12 56398729 56398729 C T SUOX Missense_Mutation p.P519L 0.21 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 12 75720296 75720296 T C CAPS2 Missense_Mutation p.I14V 0.12 tolerated_low_confidence(1) benign(0) TCGA-VS-A8QM-01 12 77417637 77417637 C T E2F7 3'UTR 0.15 TCGA-VS-A8QM-01 13 27333171 27333171 A G GPR12 Missense_Mutation p.M265T 0.20 tolerated(0.32) benign(0.3) TCGA-VS-A8QM-01 14 107048799 107048799 C A IGHV3-53 Missense_Mutation p.G74V 0.09 deleterious_low_confidence(0.01) benign(0.056) TCGA-VS-A8QM-01 14 23005122 23005122 G C TRAJ8 Missense_Mutation p.G11A 0.10 unknown(0) TCGA-VS-A8QM-01 14 23005152 23005152 G C TRAJ9 3'Flank 0.07 TCGA-VS-A8QM-01 14 88936070 88936070 C T PTPN21 Missense_Mutation p.G1003E 0.17 deleterious(0) probably_damaging(0.98) TCGA-VS-A8QM-01 14 92198325 92198325 C G CATSPERB 5'UTR 0.18 TCGA-VS-A8QM-01 15 51350504 51350504 G A TNFAIP8L3 Silent p.V151V 0.17 TCGA-VS-A8QM-01 15 52532034 52532034 G A MYO5C Missense_Mutation p.R867W 0.15 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QM-01 15 67681279 67681279 G C IQCH Missense_Mutation p.E523Q 0.07 deleterious(0.05) possibly_damaging(0.517) TCGA-VS-A8QM-01 15 72040834 72040834 C T THSD4 Silent p.D772D 0.10 TCGA-VS-A8QM-01 15 74565206 74565206 C T CCDC33 Missense_Mutation p.R245C 0.10 deleterious(0) probably_damaging(0.942) TCGA-VS-A8QM-01 15 81625457 81625457 C T TMC3 Missense_Mutation p.G869E 0.17 tolerated_low_confidence(0.08) benign(0.033) TCGA-VS-A8QM-01 16 20422871 20422871 C G ACSM5 Missense_Mutation p.S22C 0.25 tolerated(0.18) benign(0.353) TCGA-VS-A8QM-01 16 22134957 22134957 G A VWA3A Silent p.R487R 0.17 TCGA-VS-A8QM-01 16 427732 427732 G A TMEM8A Missense_Mutation p.R80C 0.11 deleterious(0) probably_damaging(0.932) TCGA-VS-A8QM-01 16 4384864 4384864 C T GLIS2 Silent p.L136L 0.12 TCGA-VS-A8QM-01 16 67304672 67304672 C T SLC9A5 Silent p.I750I 0.13 TCGA-VS-A8QM-01 16 67304959 67304959 C G SLC9A5 Missense_Mutation p.A846G 0.12 tolerated_low_confidence(0.18) benign(0.009) TCGA-VS-A8QM-01 16 67760049 67760049 C G RANBP10 3'UTR 0.04 TCGA-VS-A8QM-01 16 81737583 81737583 G A CMIP Missense_Mutation p.G662R 0.15 deleterious(0.03) probably_damaging(0.928) TCGA-VS-A8QM-01 16 88945811 88945811 G A CBFA2T3 Missense_Mutation p.S510L 0.10 deleterious(0) benign(0.014) TCGA-VS-A8QM-01 17 10358056 10358056 A G MYH4 Missense_Mutation p.L836P 0.09 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 17 47296952 47296952 C G ABI3 Missense_Mutation p.I171M 0.11 tolerated(0.1) possibly_damaging(0.798) TCGA-VS-A8QM-01 17 55950028 55950028 C T CUEDC1 Silent p.E260E 0.11 TCGA-VS-A8QM-01 17 74085320 74085320 T C EXOC7 Missense_Mutation p.Y379C 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-VS-A8QM-01 17 79632521 79632521 C G OXLD1 Missense_Mutation p.D52H 0.15 deleterious(0.04) benign(0.011) TCGA-VS-A8QM-01 18 6859872 6859872 T C ARHGAP28 Silent p.F75F 0.07 TCGA-VS-A8QM-01 19 11943949 11943949 T G ZNF440 3'UTR 0.16 TCGA-VS-A8QM-01 19 14589314 14589314 C T GIPC1 Missense_Mutation p.E306K 0.11 tolerated(0.19) benign(0.041) TCGA-VS-A8QM-01 19 14876349 14876349 C G EMR2 Missense_Mutation p.G272A 0.12 deleterious(0.01) possibly_damaging(0.609) TCGA-VS-A8QM-01 19 22782582 22782582 G C AC011467.1 5'Flank 0.07 TCGA-VS-A8QM-01 19 35487015 35487015 G A GRAMD1A 5'Flank 0.08 TCGA-VS-A8QM-01 19 41008133 41008133 C T SPTBN4 Silent p.I332I 0.07 TCGA-VS-A8QM-01 19 43585360 43585360 G C PSG2 Missense_Mutation p.Q35E 0.06 deleterious(0.03) benign(0.237) TCGA-VS-A8QM-01 19 48035410 48035410 C A ZNF541 Missense_Mutation p.M1111I 0.29 tolerated(0.14) benign(0.158) TCGA-VS-A8QM-01 19 48035413 48035413 C T ZNF541 Missense_Mutation p.M1110I 0.27 tolerated(0.74) benign(0.005) TCGA-VS-A8QM-01 19 48035513 48035513 C T ZNF541 Missense_Mutation p.G1077E 0.39 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 19 51295017 51295017 G T ACPT Missense_Mutation p.W136C 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 19 57335932 57335932 G A PEG3 Missense_Mutation p.P31L 0.12 deleterious(0) probably_damaging(0.997) TCGA-VS-A8QM-01 19 58083423 58083423 T A ZNF416 3'UTR 0.14 TCGA-VS-A8QM-01 19 58565272 58565272 C T ZSCAN1 Silent p.S360S 0.18 TCGA-VS-A8QM-01 19 5893204 5893204 C T NDUFA11 Missense_Mutation p.M137I 0.16 tolerated_low_confidence(0.07) unknown(0) TCGA-VS-A8QM-01 1 107683675 107683675 G A NTNG1 5'UTR 0.14 TCGA-VS-A8QM-01 1 110882384 110882384 C T RBM15 Silent p.S119S 0.12 TCGA-VS-A8QM-01 1 110882431 110882432 CG T RBM15 Frame_Shift_Del p.S135Lfs*38 0.22 TCGA-VS-A8QM-01 1 1326999 1326999 G C CCNL2 Intron 0.16 TCGA-VS-A8QM-01 1 14150804 14150804 G A PRDM2 3'UTR 0.15 TCGA-VS-A8QM-01 1 152692142 152692142 C T C1orf68 Missense_Mutation p.P49S 0.13 deleterious(0.01) benign(0.067) TCGA-VS-A8QM-01 1 152692617 152692617 C G C1orf68 Missense_Mutation p.S207C 0.09 tolerated_low_confidence(1) possibly_damaging(0.843) TCGA-VS-A8QM-01 1 155265026 155265026 C T PKLR Missense_Mutation p.R192Q 0.16 tolerated(0.38) benign(0.002) TCGA-VS-A8QM-01 1 156264350 156264350 C G C1orf85 Missense_Mutation p.E129Q 0.19 deleterious(0) possibly_damaging(0.858) TCGA-VS-A8QM-01 1 160065001 160065001 C T IGSF8 Missense_Mutation p.E34K 0.18 tolerated(0.85) benign(0.002) TCGA-VS-A8QM-01 1 180913859 180913859 G C KIAA1614 Intron 0.31 TCGA-VS-A8QM-01 1 204433633 204433633 C T PIK3C2B Silent p.L378L 0.11 TCGA-VS-A8QM-01 1 2161038 2161038 C G SKI Missense_Mutation p.S278W 0.14 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 1 27939610 27939610 C G FGR Missense_Mutation p.E469Q 0.07 tolerated(0.36) possibly_damaging(0.901) TCGA-VS-A8QM-01 1 82416777 82416777 C T LPHN2 Missense_Mutation p.S523L 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-VS-A8QM-01 20 2398194 2398194 C T TGM6 Silent p.H551H 0.26 TCGA-VS-A8QM-01 20 24930101 24930101 G A CST7 5'UTR 0.13 TCGA-VS-A8QM-01 20 25388387 25388387 G A GINS1 5'UTR 0.07 TCGA-VS-A8QM-01 20 2776285 2776285 G A CPXM1 Silent p.G560G 0.11 TCGA-VS-A8QM-01 20 33703557 33703557 G C EDEM2 Missense_Mutation p.I472M 0.16 tolerated(0.08) probably_damaging(0.961) TCGA-VS-A8QM-01 20 34817417 34817417 T G EPB41L1 3'UTR 0.21 TCGA-VS-A8QM-01 20 41400138 41400138 C G PTPRT Missense_Mutation p.Q207H 0.07 deleterious(0) probably_damaging(0.974) TCGA-VS-A8QM-01 20 5948128 5948128 C T MCM8 Missense_Mutation p.P308S 0.10 deleterious(0) possibly_damaging(0.881) TCGA-VS-A8QM-01 20 60791401 60791401 C T HRH3 Silent p.L333L 0.32 TCGA-VS-A8QM-01 21 37418155 37418155 G A SETD4 Missense_Mutation p.L151F 0.12 tolerated(0.1) possibly_damaging(0.558) TCGA-VS-A8QM-01 21 38308775 38308775 G A HLCS Missense_Mutation p.R324C 0.17 tolerated(0.16) benign(0) TCGA-VS-A8QM-01 2 160086821 160086821 G C TANC1 Missense_Mutation p.E1628D 0.19 tolerated_low_confidence(0.57) benign(0.009) TCGA-VS-A8QM-01 2 170488281 170488281 C G PPIG Missense_Mutation p.S256C 0.06 deleterious(0.02) benign(0.184) TCGA-VS-A8QM-01 2 172182377 172182377 C G METTL8 Missense_Mutation p.G336A 0.10 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QM-01 2 179605173 179605173 A G TTN Silent p.L4263L 0.15 TCGA-VS-A8QM-01 2 179616622 179616622 A C TTN Intron 0.11 TCGA-VS-A8QM-01 2 196548582 196548582 A G SLC39A10 Missense_Mutation p.K390E 0.09 tolerated(0.42) benign(0.075) TCGA-VS-A8QM-01 2 207171651 207171651 C T ZDBF2 Missense_Mutation p.S800L 0.14 deleterious(0.02) possibly_damaging(0.693) TCGA-VS-A8QM-01 2 220347868 220347868 G T SPEG Nonsense_Mutation p.E1895* 0.12 TCGA-VS-A8QM-01 2 71681001 71681001 G C DYSF 5'UTR 0.17 TCGA-VS-A8QM-01 2 86014297 86014297 G A ATOH8 3'UTR 0.25 TCGA-VS-A8QM-01 3 11851141 11851141 C T TAMM41 Missense_Mutation p.E242K 0.15 tolerated(0.19) possibly_damaging(0.566) TCGA-VS-A8QM-01 3 12434161 12434161 G A PPARG Missense_Mutation p.D177N 0.11 deleterious(0.02) possibly_damaging(0.611) TCGA-VS-A8QM-01 3 143708421 143708421 C T C3orf58 Missense_Mutation p.S344L 0.14 deleterious(0.04) possibly_damaging(0.487) TCGA-VS-A8QM-01 3 154022727 154022727 C T DHX36 Missense_Mutation p.E335K 0.12 deleterious(0) probably_damaging(0.999) TCGA-VS-A8QM-01 3 155222376 155222376 G A PLCH1 Nonsense_Mutation p.R546* 0.08 TCGA-VS-A8QM-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.10 deleterious(0.02) probably_damaging(0.959) TCGA-VS-A8QM-01 3 180325621 180325621 G A TTC14 Intron 0.14 TCGA-VS-A8QM-01 3 192514761 192514761 T G MB21D2 3'UTR 0.07 TCGA-VS-A8QM-01 3 193363537 193363537 G A OPA1 Missense_Mutation p.E550K 0.13 deleterious(0.03) benign(0.15) TCGA-VS-A8QM-01 3 30732996 30732996 C T TGFBR2 Missense_Mutation p.R562C 0.15 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 3 49462202 49462202 C T NICN1 3'UTR 0.16 TCGA-VS-A8QM-01 3 51663365 51663365 G A RAD54L2 Silent p.E119E 0.16 TCGA-VS-A8QM-01 4 53740094 53740094 G A SCFD2 3'UTR 0.10 TCGA-VS-A8QM-01 4 83348655 83348655 G C HNRNPDL Missense_Mutation p.I279M 0.21 deleterious(0) probably_damaging(0.982) TCGA-VS-A8QM-01 5 118728686 118728686 G C TNFAIP8 Missense_Mutation p.E69D 0.23 tolerated(0.13) probably_damaging(0.992) TCGA-VS-A8QM-01 5 135692867 135692867 T G TRPC7 Missense_Mutation p.N70T 0.13 deleterious(0) probably_damaging(0.978) TCGA-VS-A8QM-01 5 138857978 138857978 C G TMEM173 Silent p.L212L 0.26 TCGA-VS-A8QM-01 5 140037183 140037183 G A IK Silent p.L282L 0.17 TCGA-VS-A8QM-01 5 140176664 140176664 C T PCDHA2 Silent p.C705C 0.15 TCGA-VS-A8QM-01 5 148427467 148427467 C A SH3TC2 Missense_Mutation p.W79C 0.20 tolerated(0.09) probably_damaging(0.997) TCGA-VS-A8QM-01 5 168119691 168119691 C T SLIT3 Missense_Mutation p.E1033K 0.26 tolerated(0.07) benign(0.359) TCGA-VS-A8QM-01 5 74680499 74680499 C T COL4A3BP Missense_Mutation p.D614N 0.26 tolerated(0.13) possibly_damaging(0.746) TCGA-VS-A8QM-01 6 147684674 147684674 A G STXBP5 Missense_Mutation p.I917V 0.10 tolerated(0.55) benign(0.014) TCGA-VS-A8QM-01 6 158902259 158902259 G A TULP4 Missense_Mutation p.R475Q 0.17 deleterious(0) probably_damaging(0.99) TCGA-VS-A8QM-01 6 29691223 29691223 G A HLA-F 5'UTR 0.09 TCGA-VS-A8QM-01 6 31526008 31526008 G C NFKBIL1 Missense_Mutation p.E256Q 0.18 tolerated(0.05) possibly_damaging(0.897) TCGA-VS-A8QM-01 6 34950538 34950538 G T ANKS1A Missense_Mutation p.G248C 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 6 35479437 35479437 C T TULP1 Missense_Mutation p.D113N 0.16 tolerated_low_confidence(0.31) benign(0.006) TCGA-VS-A8QM-01 6 44971471 44971471 G A SUPT3H Silent p.L152L 0.10 TCGA-VS-A8QM-01 6 79911416 79911416 C T HMGN3 Missense_Mutation p.E97K 0.11 tolerated_low_confidence(0.98) benign(0) TCGA-VS-A8QM-01 6 96984263 96984263 C T UFL1 Silent p.L267L 0.09 TCGA-VS-A8QM-01 7 149520478 149520478 C T SSPO RNA 0.11 TCGA-VS-A8QM-01 7 2702877 2702877 C T TTYH3 3'UTR 0.17 TCGA-VS-A8QM-01 7 56078808 56078808 C T PSPH 3'UTR 0.15 TCGA-VS-A8QM-01 7 73929686 73929686 C G GTF2IRD1 Missense_Mutation p.Q93E 0.10 tolerated(1) benign(0) TCGA-VS-A8QM-01 7 87092157 87092157 C T ABCB4 Missense_Mutation p.G68E 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 7 87759723 87759723 C T ADAM22 Silent p.S258S 0.11 TCGA-VS-A8QM-01 7 98659431 98659431 C G SMURF1 Missense_Mutation p.D29H 0.05 deleterious(0) probably_damaging(0.978) TCGA-VS-A8QM-01 8 117858307 117858307 C T RAD21 3'UTR 0.16 TCGA-VS-A8QM-01 8 120257079 120257079 C T MAL2 3'UTR 0.11 TCGA-VS-A8QM-01 8 145139078 145139078 C T GPAA1 Nonsense_Mutation p.Q220* 0.15 TCGA-VS-A8QM-01 8 145730008 145730008 G A GPT Missense_Mutation p.E62K 0.14 tolerated(0.21) possibly_damaging(0.869) TCGA-VS-A8QM-01 8 28019531 28019531 G A ELP3 Silent p.L501L 0.10 TCGA-VS-A8QM-01 8 33251748 33251748 C T FUT10 Intron 0.12 TCGA-VS-A8QM-01 8 86044186 86044186 G A LRRCC1 Missense_Mutation p.R653K 0.09 deleterious(0.01) possibly_damaging(0.831) TCGA-VS-A8QM-01 9 125865519 125865519 C T RABGAP1 3'UTR 0.22 TCGA-VS-A8QM-01 9 13224405 13224405 C T MPDZ Missense_Mutation p.E121K 0.12 deleterious(0.01) possibly_damaging(0.513) TCGA-VS-A8QM-01 9 138012872 138012872 G A OLFM1 3'UTR 0.11 TCGA-VS-A8QM-01 9 14740233 14740233 C T FREM1 Splice_Site p.X2085_splice 0.24 TCGA-VS-A8QM-01 9 5080608 5080608 T C JAK2 Missense_Mutation p.C787R 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A8QM-01 9 72785486 72785486 G A MAMDC2 Silent p.R530R 0.21 TCGA-VS-A8QM-01 9 74817659 74817659 G A GDA Splice_Site p.X128_splice 0.29 TCGA-VS-A8QM-01 9 79461545 79461545 C T PRUNE2 Missense_Mutation p.E132K 0.13 deleterious(0) probably_damaging(0.992) TCGA-VS-A8QM-01 9 85914069 85914069 G C FRMD3 Nonsense_Mutation p.S320* 0.34 TCGA-VS-A8QM-01 X 123513033 123513033 A T TENM1 3'UTR 0.13 TCGA-VS-A8QM-01 X 134292211 134292211 C G CT55 Missense_Mutation p.L150F 0.09 deleterious(0.01) benign(0.023) TCGA-VS-A8QM-01 X 154009540 154009540 T C MPP1 Missense_Mutation p.I400V 0.08 tolerated(0.09) benign(0.016) TCGA-VS-A8QM-01 X 19478199 19478199 C A MAP3K15 Silent p.A264A 0.06 TCGA-VS-A8QM-01 X 30237019 30237019 G A MAGEB2 Missense_Mutation p.E108K 0.18 tolerated(0.46) benign(0) TCGA-VS-A8QM-01 X 48972275 48972275 C T GPKOW Missense_Mutation p.M370I 0.12 tolerated(0.2) benign(0.001) TCGA-VS-A8QM-01 X 49806990 49806990 G A CLCN5 Missense_Mutation p.E28K 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.465) TCGA-VS-A8QM-01 X 53279620 53279620 G A IQSEC2 Missense_Mutation p.S713F 0.12 deleterious(0) probably_damaging(0.979) TCGA-VS-A8QM-01 X 70444292 70444292 G A GJB1 Silent p.Q245Q 0.10 TCGA-VS-A8QM-01 X 83128400 83128400 G C CYLC1 Missense_Mutation p.K228N 0.15 tolerated(0.14) benign(0.266) TCGA-VS-A94W-01 10 114173009 114173009 T C ACSL5 Silent p.L399L 0.21 TCGA-VS-A94W-01 10 49935520 49935520 G A WDFY4 Missense_Mutation p.D263N 0.17 tolerated(0.6) benign(0.011) TCGA-VS-A94W-01 11 113141205 113141205 G A NCAM1 Intron 0.44 TCGA-VS-A94W-01 11 1214023 1214023 G A MUC5AC RNA 0.25 TCGA-VS-A94W-01 11 380196 380196 G A B4GALNT4 Silent p.A903A 0.26 TCGA-VS-A94W-01 11 48239157 48239157 G T OR4B1 Missense_Mutation p.D266Y 0.28 deleterious(0) probably_damaging(0.988) TCGA-VS-A94W-01 11 63398601 63398601 G A ATL3 Missense_Mutation p.L484F 0.25 tolerated(0.05) possibly_damaging(0.629) TCGA-VS-A94W-01 11 64664233 64664233 C T ATG2A Silent p.S1753S 0.40 TCGA-VS-A94W-01 12 122255545 122255545 G A SETD1B Missense_Mutation p.E1057K 0.22 unknown(0) TCGA-VS-A94W-01 12 126128666 126128666 G A TMEM132B Missense_Mutation p.M489I 0.35 tolerated(0.17) benign(0.017) TCGA-VS-A94W-01 12 45429851 45429851 C T DBX2 Silent p.A150A 0.30 TCGA-VS-A94W-01 13 52952889 52952889 G A THSD1 Nonsense_Mutation p.Q406* 0.18 TCGA-VS-A94W-01 13 80122494 80122494 G A NDFIP2 Missense_Mutation p.G291E 0.07 deleterious(0.03) probably_damaging(1) TCGA-VS-A94W-01 14 22192118 22192118 G A TRAV3 5'UTR 0.21 TCGA-VS-A94W-01 14 48143879 48143879 G A MDGA2 Nonsense_Mutation p.R41* 0.62 TCGA-VS-A94W-01 14 65268950 65268950 G A SPTB Missense_Mutation p.T187M 0.56 deleterious(0) probably_damaging(1) TCGA-VS-A94W-01 14 72431588 72431588 G A RGS6 Missense_Mutation p.C27Y 0.49 deleterious(0.01) benign(0.002) TCGA-VS-A94W-01 14 73572764 73572764 G A RBM25 Missense_Mutation p.R451Q 0.55 unknown(0) TCGA-VS-A94W-01 14 94595601 94595601 C T IFI27L2 Missense_Mutation p.G12E 0.43 deleterious(0) unknown(0) TCGA-VS-A94W-01 15 89421083 89421083 G A HAPLN3 3'UTR 0.33 TCGA-VS-A94W-01 15 90138744 90138744 A T TICRR Missense_Mutation p.D601V 0.20 deleterious(0.04) benign(0.025) TCGA-VS-A94W-01 16 2474983 2474983 G A CCNF 5'Flank 0.12 TCGA-VS-A94W-01 16 27480834 27480834 C T GTF3C1 Missense_Mutation p.E1618K 0.26 deleterious(0.02) possibly_damaging(0.627) TCGA-VS-A94W-01 16 29810435 29810435 G A KIF22 Missense_Mutation p.R230Q 0.24 tolerated(0.64) benign(0.026) TCGA-VS-A94W-01 16 30198005 30198005 C T CORO1A Silent p.N95N 0.27 TCGA-VS-A94W-01 16 57180320 57180320 C G CPNE2 Intron 0.25 TCGA-VS-A94W-01 16 67709595 67709595 C A GFOD2 Missense_Mutation p.Q207H 0.17 tolerated(0.16) probably_damaging(0.999) TCGA-VS-A94W-01 16 75669684 75669684 C T KARS Missense_Mutation p.R258K 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A94W-01 16 81094975 81094975 G A C16orf46 Silent p.L327L 0.29 TCGA-VS-A94W-01 16 89245947 89245947 G A CDH15 Missense_Mutation p.E56K 0.05 deleterious(0) probably_damaging(1) TCGA-VS-A94W-01 16 90033202 90033202 T A DEF8 3'UTR 0.13 TCGA-VS-A94W-01 17 1641605 1641605 G C WDR81 3'UTR 0.27 TCGA-VS-A94W-01 17 31341017 31341017 G A ASIC2 Missense_Mutation p.T553M 0.22 deleterious(0) possibly_damaging(0.847) TCGA-VS-A94W-01 17 41223018 41223018 T A BRCA1 Missense_Mutation p.E1659V 0.26 deleterious(0) benign(0.227) TCGA-VS-A94W-01 17 62486983 62486983 A G POLG2 Missense_Mutation p.I300T 0.18 deleterious(0) probably_damaging(0.984) TCGA-VS-A94W-01 17 71334516 71334516 G C SDK2 3'UTR 0.33 TCGA-VS-A94W-01 19 1110774 1110774 G A SBNO2 Missense_Mutation p.R1000W 0.29 deleterious(0) possibly_damaging(0.773) TCGA-VS-A94W-01 19 4546437 4546437 T C SEMA6B Missense_Mutation p.D549G 0.05 tolerated(0.47) benign(0.082) TCGA-VS-A94W-01 19 45555355 45555355 G A CLASRP Silent p.Q42Q 0.47 TCGA-VS-A94W-01 19 45991907 45991907 G C RTN2 Missense_Mutation p.L480V 0.41 tolerated(0.08) possibly_damaging(0.78) TCGA-VS-A94W-01 19 48339517 48339517 C T CRX Missense_Mutation p.R40W 0.16 deleterious(0) probably_damaging(1) TCGA-VS-A94W-01 19 51647679 51647679 C G SIGLEC7 Silent p.P150P 0.12 TCGA-VS-A94W-01 19 53958991 53958991 C G ZNF761 RNA 0.12 TCGA-VS-A94W-01 19 55858913 55858913 C T SUV420H2 3'UTR 0.45 TCGA-VS-A94W-01 1 116235122 116235122 C T VANGL1 3'UTR 0.24 TCGA-VS-A94W-01 1 149760007 149760007 G C FCGR1A Silent p.L131L 0.19 TCGA-VS-A94W-01 1 156563958 156563958 G T APOA1BP 3'UTR 0.33 TCGA-VS-A94W-01 1 160125858 160125858 C T ATP1A4 Silent p.S145S 0.15 TCGA-VS-A94W-01 1 174983586 174983586 G A MRPS14 3'UTR 0.14 TCGA-VS-A94W-01 1 177250457 177250457 T C BRINP2 Silent p.S715S 0.13 TCGA-VS-A94W-01 1 196800945 196800945 G A CFHR1 Missense_Mutation p.R270Q 0.21 tolerated(0.08) benign(0.15) TCGA-VS-A94W-01 1 211652456 211652456 G A RD3 Silent p.S170S 0.17 TCGA-VS-A94W-01 1 224922326 224922326 G A CNIH3 Missense_Mutation p.A125T 0.28 tolerated(0.06) possibly_damaging(0.744) TCGA-VS-A94W-01 1 248685223 248685223 G A OR2G6 Missense_Mutation p.M92I 0.50 tolerated(1) benign(0) TCGA-VS-A94W-01 1 85122122 85122122 G A SSX2IP Missense_Mutation p.S375L 0.30 tolerated(0.06) probably_damaging(0.916) TCGA-VS-A94W-01 1 87380622 87380622 C T HS2ST1 5'UTR 0.15 TCGA-VS-A94W-01 20 37667228 37667228 C T DHX35 3'UTR 0.33 TCGA-VS-A94W-01 20 61936897 61936897 C T COL20A1 Missense_Mutation p.R108W 0.29 deleterious(0) probably_damaging(0.915) TCGA-VS-A94W-01 21 18976489 18976489 C T BTG3 Silent p.L139L 0.15 TCGA-VS-A94W-01 22 37768924 37768924 C T ELFN2 3'UTR 0.35 TCGA-VS-A94W-01 22 38111885 38111885 C T TRIOBP Missense_Mutation p.P191L 0.33 deleterious_low_confidence(0) benign(0.145) TCGA-VS-A94W-01 22 43089001 43089001 C A A4GALT Missense_Mutation p.K319N 0.33 tolerated(0.13) probably_damaging(0.943) TCGA-VS-A94W-01 22 46793612 46793612 C T CELSR1 Missense_Mutation p.C1887Y 0.29 deleterious(0) probably_damaging(0.969) TCGA-VS-A94W-01 2 128331589 128331589 C T MYO7B Silent p.G229G 0.26 TCGA-VS-A94W-01 2 141004687 141004687 G T LRP1B Missense_Mutation p.P4431Q 0.19 possibly_damaging(0.804) TCGA-VS-A94W-01 2 149226816 149226816 C G MBD5 Missense_Mutation p.S435C 0.27 deleterious(0) possibly_damaging(0.843) TCGA-VS-A94W-01 2 232018284 232018284 C T PSMD1 Nonsense_Mutation p.Q708* 0.30 TCGA-VS-A94W-01 2 28788144 28788144 C T PLB1 Intron 0.40 TCGA-VS-A94W-01 3 105243287 105243287 G C ALCAM Missense_Mutation p.R110T 0.17 tolerated(0.72) benign(0.017) TCGA-VS-A94W-01 3 113346972 113346972 G A SIDT1 3'UTR 0.07 TCGA-VS-A94W-01 3 15116419 15116419 G A ZFYVE20 Nonsense_Mutation p.R409* 0.32 TCGA-VS-A94W-01 3 157160185 157160185 G A PTX3 Missense_Mutation p.R188H 0.09 deleterious(0) probably_damaging(1) TCGA-VS-A94W-01 4 151817577 151817577 G A LRBA Missense_Mutation p.A679V 0.09 deleterious(0.01) probably_damaging(0.971) TCGA-VS-A94W-01 4 186294095 186294095 G A LRP2BP Missense_Mutation p.R240C 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A94W-01 4 6031469 6031469 G A JAKMIP1 Missense_Mutation p.R807W 0.16 deleterious(0) probably_damaging(0.999) TCGA-VS-A94W-01 4 7057933 7057933 C A TADA2B 3'UTR 0.36 TCGA-VS-A94W-01 4 7057956 7057956 C G TADA2B 3'UTR 0.34 TCGA-VS-A94W-01 4 7058006 7058006 C G TADA2B 3'UTR 0.30 TCGA-VS-A94W-01 5 112238078 112238078 T A REEP5 Missense_Mutation p.K117M 0.11 deleterious(0) probably_damaging(0.997) TCGA-VS-A94W-01 5 1208947 1208947 C T SLC6A19 Missense_Mutation p.R97W 0.55 deleterious(0) probably_damaging(0.997) TCGA-VS-A94W-01 5 132227941 132227941 G A AFF4 Missense_Mutation p.T851M 0.08 tolerated(0.11) benign(0.009) TCGA-VS-A94W-01 5 140235801 140235801 G A PCDHA10 Silent p.A56A 0.09 TCGA-VS-A94W-01 5 140564904 140564904 C G PCDHB16 3'UTR 0.68 TCGA-VS-A94W-01 5 140891767 140891767 C T PCDHGB6 3'UTR 0.12 TCGA-VS-A94W-01 5 145616869 145616869 A G RBM27 Missense_Mutation p.I385V 0.08 deleterious_low_confidence(0.04) benign(0.024) TCGA-VS-A94W-01 5 156589739 156589739 G C FAM71B Missense_Mutation p.Q513E 0.31 deleterious(0.01) benign(0.006) TCGA-VS-A94W-01 5 60048226 60048226 G A ELOVL7 3'UTR 0.09 TCGA-VS-A94W-01 5 77656401 77656401 C G SCAMP1 5'UTR 0.53 TCGA-VS-A94W-01 6 160526637 160526637 C T IGF2R 3'UTR 0.36 TCGA-VS-A94W-01 6 36076995 36076995 C T MAPK14 3'UTR 0.56 TCGA-VS-A94W-01 6 66204699 66204699 C T EYS Missense_Mutation p.C202Y 0.37 deleterious(0) probably_damaging(0.991) TCGA-VS-A94W-01 6 72947577 72947577 A T RIMS1 Nonsense_Mutation p.K637* 0.18 TCGA-VS-A94W-01 7 110763464 110763464 C T LRRN3 Silent p.I212I 0.19 TCGA-VS-A94W-01 7 121652116 121652116 C G PTPRZ1 Missense_Mutation p.L1006V 0.24 tolerated_low_confidence(0.05) benign(0.01) TCGA-VS-A94W-01 7 127970953 127970953 C G RBM28 Missense_Mutation p.E350Q 0.16 tolerated(0.25) benign(0.044) TCGA-VS-A94W-01 7 149479296 149479296 C T SSPO RNA 0.18 TCGA-VS-A94W-01 7 35242195 35242195 C T TBX20 Silent p.L397L 0.33 TCGA-VS-A94W-01 7 44080509 44080509 G A DBNL 5'Flank 0.22 TCGA-VS-A94W-01 8 113649079 113649079 G A CSMD3 Nonsense_Mutation p.R1228* 0.17 TCGA-VS-A94W-01 8 144621451 144621451 G A ZC3H3 Missense_Mutation p.P29L 0.29 deleterious(0.03) benign(0.021) TCGA-VS-A94W-01 8 15978004 15978004 C T MSR1 Missense_Mutation p.R382H 0.37 deleterious(0.01) benign(0.37) TCGA-VS-A94W-01 9 100899883 100899883 C T CORO2A Missense_Mutation p.E97K 0.45 deleterious(0.02) benign(0.297) TCGA-VS-A94W-01 9 117825450 117825450 C T TNC Missense_Mutation p.G1260E 0.43 tolerated(0.13) benign(0.132) TCGA-VS-A94W-01 9 131389742 131389742 C T SPTAN1 Silent p.H2218H 0.52 TCGA-VS-A94W-01 9 13168408 13168408 G A MPDZ Nonsense_Mutation p.R1071* 0.05 TCGA-VS-A94W-01 X 100881762 100881762 C G ARMCX3 3'UTR 0.16 TCGA-VS-A94W-01 X 100881964 100881964 A T ARMCX3 3'UTR 0.22 TCGA-VS-A94W-01 X 103495163 103495163 G T ESX1 Missense_Mutation p.P323T 0.24 tolerated_low_confidence(0.16) unknown(0) TCGA-VS-A94W-01 X 144909560 144909560 C G TMEM257 3'UTR 0.08 TCGA-VS-A94W-01 X 146318546 146318546 T C MIR508 5'Flank 0.15 TCGA-VS-A94W-01 X 151303679 151303679 C T MAGEA10 Silent p.V138V 0.21 TCGA-VS-A94W-01 X 18660063 18660063 G C RS1 3'UTR 0.19 TCGA-VS-A94W-01 X 31893476 31893476 T A DMD Missense_Mutation p.L2309F 0.29 possibly_damaging(0.765) TCGA-VS-A94W-01 X 57021334 57021334 G A SPIN3 Missense_Mutation p.T16M 0.16 deleterious(0.01) possibly_damaging(0.724) TCGA-VS-A94W-01 X 69080736 69080736 C T EDA Intron 0.22 TCGA-VS-A94W-01 X 70367431 70367431 G A NLGN3 5'UTR 0.45 TCGA-VS-A94W-01 X 76776964 76776964 G A ATRX Nonsense_Mutation p.Q2330* 0.29 TCGA-VS-A94W-01 X 90692060 90692060 G A PABPC5 3'UTR 0.15 TCGA-VS-A94X-01 10 101162437 101162437 C T GOT1 Missense_Mutation p.M334I 0.26 deleterious(0) probably_damaging(1) TCGA-VS-A94X-01 10 129907507 129907507 G A MKI67 Missense_Mutation p.S866L 0.31 tolerated(1) benign(0.004) TCGA-VS-A94X-01 10 14560637 14560637 C A FAM107B 3'UTR 0.38 TCGA-VS-A94X-01 10 15098832 15098832 C T OLAH Missense_Mutation p.S58F 0.21 tolerated_low_confidence(0.68) benign(0) TCGA-VS-A94X-01 10 15138466 15138466 G A C10orf111 Missense_Mutation p.L120F 0.31 tolerated_low_confidence(0.24) probably_damaging(0.982) TCGA-VS-A94X-01 10 29746711 29746711 G C SVIL 3'UTR 0.11 TCGA-VS-A94X-01 10 323137 323137 C T DIP2C 3'UTR 0.37 TCGA-VS-A94X-01 10 69682829 69682829 G A HERC4 Silent p.S1011S 0.54 TCGA-VS-A94X-01 10 69966629 69966629 C T MYPN Silent p.I1254I 0.31 TCGA-VS-A94X-01 10 75523638 75523638 G A SEC24C Missense_Mutation p.R375Q 0.22 deleterious(0) probably_damaging(0.996) TCGA-VS-A94X-01 11 114441761 114441761 C G NXPE4 Missense_Mutation p.D512H 0.26 deleterious(0) probably_damaging(0.986) TCGA-VS-A94X-01 11 119178657 119178657 G C CBL 3'UTR 0.26 TCGA-VS-A94X-01 11 122681809 122681809 C G UBASH3B 3'UTR 0.34 TCGA-VS-A94X-01 11 130004 130004 G A LINC01001 RNA 0.14 TCGA-VS-A94X-01 11 134132432 134132432 C T ACAD8 Nonsense_Mutation p.Q371* 0.12 TCGA-VS-A94X-01 11 281547 281547 G C NLRP6 Missense_Mutation p.E605Q 0.32 tolerated(0.08) possibly_damaging(0.489) TCGA-VS-A94X-01 11 281792 281792 G C NLRP6 Missense_Mutation p.K686N 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-VS-A94X-01 11 45670551 45670551 G A CHST1 3'UTR 0.32 TCGA-VS-A94X-01 11 46776618 46776618 C A CKAP5 Splice_Site p.X1564_splice 0.42 TCGA-VS-A94X-01 11 46896361 46896361 C T LRP4 Missense_Mutation p.D1407N 0.27 tolerated(0.23) possibly_damaging(0.615) TCGA-VS-A94X-01 11 62295650 62295650 G T AHNAK Nonsense_Mutation p.S2080* 0.33 TCGA-VS-A94X-01 11 62297572 62297572 G C AHNAK Missense_Mutation p.F1439L 0.40 probably_damaging(0.992) TCGA-VS-A94X-01 11 63449017 63449017 G C RTN3 5'UTR 0.34 TCGA-VS-A94X-01 11 64864529 64864529 G T VPS51 Missense_Mutation p.Q96H 0.26 tolerated(0.06) benign(0.142) TCGA-VS-A94X-01 11 65561657 65561657 G C OVOL1 Missense_Mutation p.D86H 0.12 tolerated(0.18) possibly_damaging(0.888) TCGA-VS-A94X-01 11 66206273 66206273 G A MRPL11 5'UTR 0.21 TCGA-VS-A94X-01 11 68115562 68115562 C T LRP5 Silent p.L113L 0.35 TCGA-VS-A94X-01 11 77412807 77412807 G A RSF1 Silent p.S489S 0.14 TCGA-VS-A94X-01 11 842503 842503 G C POLR2L Missense_Mutation p.I2M 0.23 tolerated(0.05) possibly_damaging(0.88) TCGA-VS-A94X-01 11 92714626 92714626 G A MTNR1B Silent p.L79L 0.27 TCGA-VS-A94X-01 11 9598740 9598756 TCATGTAGTTCGATATT - WEE1 Frame_Shift_Del p.H358Lfs*7 0.24 TCGA-VS-A94X-01 12 100926355 100926355 G C NR1H4 Missense_Mutation p.E199Q 0.24 tolerated(0.14) benign(0.113) TCGA-VS-A94X-01 12 109611934 109611934 C G ACACB Intron 0.26 TCGA-VS-A94X-01 12 110927821 110927821 C T FAM216A Intron 0.38 TCGA-VS-A94X-01 12 112481638 112481638 C G NAA25 Missense_Mutation p.E681Q 0.14 tolerated(0.33) benign(0.071) TCGA-VS-A94X-01 12 113607632 113607632 G A DDX54 Silent p.L453L 0.26 TCGA-VS-A94X-01 12 114836456 114836456 G A TBX5 Silent p.T144T 0.31 TCGA-VS-A94X-01 12 118454626 118454626 C T RFC5 5'UTR 0.12 TCGA-VS-A94X-01 12 122233879 122233879 C A RHOF 5'Flank 0.06 TCGA-VS-A94X-01 12 123425494 123425494 C T ABCB9 Missense_Mutation p.E477K 0.15 tolerated(0.06) possibly_damaging(0.465) TCGA-VS-A94X-01 12 123425516 123425516 C T ABCB9 Silent p.L469L 0.15 TCGA-VS-A94X-01 12 123741516 123741516 G A C12orf65 Missense_Mutation p.E147K 0.11 tolerated(0.26) unknown(0) TCGA-VS-A94X-01 12 132549224 132549224 C G EP400 Missense_Mutation p.I2782M 0.14 possibly_damaging(0.496) TCGA-VS-A94X-01 12 14928157 14928157 G A H2AFJ 3'UTR 0.68 TCGA-VS-A94X-01 12 18434984 18434984 G C PIK3C2G 5'UTR 0.08 TCGA-VS-A94X-01 12 24736147 24736147 G A LINC00477 RNA 0.24 TCGA-VS-A94X-01 12 2717867 2717867 G C CACNA1C Missense_Mutation p.D1203H 0.35 deleterious(0) possibly_damaging(0.857) TCGA-VS-A94X-01 12 29509331 29509331 G A ERGIC2 Missense_Mutation p.H186Y 0.20 deleterious(0) probably_damaging(0.997) TCGA-VS-A94X-01 12 41966994 41966994 G T PDZRN4 Nonsense_Mutation p.E805* 0.27 TCGA-VS-A94X-01 12 48920294 48920294 G A OR8S1 Missense_Mutation p.E294K 0.26 deleterious(0.01) benign(0.38) TCGA-VS-A94X-01 12 49418420 49418420 G C KMT2D Silent p.L5331L 0.36 TCGA-VS-A94X-01 12 49418665 49418665 G T KMT2D Silent p.L5283L 0.45 TCGA-VS-A94X-01 12 49420682 49420682 C T KMT2D Missense_Mutation p.D5023N 0.31 unknown(0) TCGA-VS-A94X-01 12 50100861 50100861 C A FMNL3 Nonsense_Mutation p.E35* 0.18 TCGA-VS-A94X-01 12 52627214 52627214 C G KRT7 Nonsense_Mutation p.S45* 0.33 TCGA-VS-A94X-01 12 53457659 53457659 G A TENC1 Missense_Mutation p.R1418K 0.27 tolerated(0.45) possibly_damaging(0.497) TCGA-VS-A94X-01 12 53722254 53722254 G A SP7 Silent p.F324F 0.38 TCGA-VS-A94X-01 12 54976547 54976547 C T PPP1R1A Silent p.K72K 0.36 TCGA-VS-A94X-01 12 55356499 55356499 G A TESPA1 Silent p.L395L 0.25 TCGA-VS-A94X-01 12 55420311 55420311 G A NEUROD4 Missense_Mutation p.E30K 0.06 tolerated(0.11) benign(0.293) TCGA-VS-A94X-01 12 56557243 56557243 C T SMARCC2 3'UTR 0.17 TCGA-VS-A94X-01 12 57522617 57522617 G T LRP1 5'UTR 0.33 TCGA-VS-A94X-01 12 6604389 6604389 G C NCAPD2 Missense_Mutation p.R42T 0.13 tolerated(0.67) benign(0.001) TCGA-VS-A94X-01 12 6669892 6669892 G C NOP2 Missense_Mutation p.S503C 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-VS-A94X-01 12 6982072 6982072 G C SPSB2 5'UTR 0.09 TCGA-VS-A94X-01 12 7044738 7044738 C G ATN1 Missense_Mutation p.S103C 0.18 probably_damaging(0.998) TCGA-VS-A94X-01 12 7046213 7046213 C G ATN1 Missense_Mutation p.Q595E 0.12 benign(0.022) TCGA-VS-A94X-01 12 7476122 7476122 C G ACSM4 Missense_Mutation p.P425R 0.47 deleterious(0) benign(0.168) TCGA-VS-A94X-01 12 7528481 7528481 C T CD163L1 Missense_Mutation p.R834K 0.17 tolerated(0.54) possibly_damaging(0.679) TCGA-VS-A94X-01 12 85677379 85677379 C T ALX1 Nonsense_Mutation p.Q86* 0.21 TCGA-VS-A94X-01 12 8902601 8902601 C G RIMKLB Missense_Mutation p.Q107E 0.36 tolerated(0.27) benign(0.081) TCGA-VS-A94X-01 12 9010628 9010628 G A A2ML1 Nonsense_Mutation p.W1065* 0.22 TCGA-VS-A94X-01 12 95914858 95914858 G A USP44 Silent p.I618I 0.28 TCGA-VS-A94X-01 12 96661128 96661128 G C ELK3 3'UTR 0.19 TCGA-VS-A94X-01 13 103450928 103450928 C T KDELC1 Silent p.K31K 0.23 TCGA-VS-A94X-01 13 103527919 103527919 C T ERCC5 Missense_Mutation p.S1076L 0.29 tolerated(0.13) benign(0.085) TCGA-VS-A94X-01 13 111102798 111102798 G A COL4A2 Missense_Mutation p.D446N 0.17 probably_damaging(0.952) TCGA-VS-A94X-01 13 36049713 36049713 G A MAB21L1 Missense_Mutation p.P188L 0.34 deleterious(0) probably_damaging(0.998) TCGA-VS-A94X-01 13 45149369 45149369 G A TSC22D1 Missense_Mutation p.S281L 0.39 deleterious(0) probably_damaging(0.989) TCGA-VS-A94X-01 13 60616926 60616926 G A DIAPH3 Missense_Mutation p.S175L 0.21 deleterious(0.03) benign(0.012) TCGA-VS-A94X-01 13 74265374 74265374 C T KLF12 3'UTR 0.10 TCGA-VS-A94X-01 13 77579607 77579607 C G FBXL3 3'UTR 0.36 TCGA-VS-A94X-01 13 96635829 96635829 C T UGGT2 Intron 0.09 TCGA-VS-A94X-01 14 102516462 102516462 C T DYNC1H1 Missense_Mutation p.A4580V 0.35 benign(0.003) TCGA-VS-A94X-01 14 105614184 105614184 C T JAG2 Missense_Mutation p.G764S 0.23 deleterious(0) possibly_damaging(0.7) TCGA-VS-A94X-01 14 105643361 105643361 C T NUDT14 Silent p.V43V 0.21 TCGA-VS-A94X-01 14 105683938 105683938 C T BRF1 Missense_Mutation p.R572Q 0.24 tolerated(0.16) benign(0.042) TCGA-VS-A94X-01 14 106388452 106388452 C G KIAA0125 Missense_Mutation p.S122C 0.22 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-VS-A94X-01 14 106950299 106950299 G A LINC00221 RNA 0.30 TCGA-VS-A94X-01 14 24034877 24034877 G C AP1G2 Missense_Mutation p.L227V 0.18 deleterious(0) probably_damaging(0.999) TCGA-VS-A94X-01 14 31611116 31611116 C G HECTD1 Missense_Mutation p.E941Q 0.21 tolerated(0.73) benign(0.021) TCGA-VS-A94X-01 14 31626115 31626115 A C HECTD1 Missense_Mutation p.I621M 0.26 deleterious(0.01) possibly_damaging(0.806) TCGA-VS-A94X-01 14 60072128 60072128 C G RTN1 Silent p.L690L 0.42 TCGA-VS-A94X-01 14 65007712 65007712 G T HSPA2 Nonsense_Mutation p.E49* 0.34 TCGA-VS-A94X-01 14 65007789 65007789 G C HSPA2 Silent p.L74L 0.25 TCGA-VS-A94X-01 14 70461121 70461121 C T SMOC1 Silent p.I196I 0.34 TCGA-VS-A94X-01 14 70712682 70712682 C G ADAM21P1 RNA 0.12 TCGA-VS-A94X-01 14 70925912 70925912 G C ADAM21 Missense_Mutation p.E566Q 0.23 deleterious(0.01) possibly_damaging(0.513) TCGA-VS-A94X-01 14 74192047 74192047 C G ELMSAN1 Missense_Mutation p.K834N 0.29 deleterious(0.02) benign(0.253) TCGA-VS-A94X-01 14 75513408 75513408 G C MLH3 Nonsense_Mutation p.S984* 0.21 TCGA-VS-A94X-01 15 33954810 33954810 G A RYR3 Silent p.T1693T 0.36 TCGA-VS-A94X-01 15 40382198 40382198 G C BMF 3'UTR 0.23 TCGA-VS-A94X-01 15 40544515 40544515 G C C15orf56 Missense_Mutation p.R153G 0.53 deleterious_low_confidence(0.03) benign(0.433) TCGA-VS-A94X-01 15 40660383 40660383 C A DISP2 Silent p.L690L 0.36 TCGA-VS-A94X-01 15 42363011 42363011 G A PLA2G4D Silent p.A649A 0.45 TCGA-VS-A94X-01 15 42512269 42512269 C G TMEM87A Missense_Mutation p.E490Q 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-VS-A94X-01 15 43237261 43237261 G A UBR1 3'UTR 0.38 TCGA-VS-A94X-01 15 44105521 44105521 C T MFAP1 Missense_Mutation p.E218K 0.35 tolerated(0.08) benign(0.252) TCGA-VS-A94X-01 15 64463467 64463467 G C CSNK1G1 3'UTR 0.13 TCGA-VS-A94X-01 15 65489713 65489713 G T CILP Missense_Mutation p.R971S 0.36 deleterious(0.04) probably_damaging(0.994) TCGA-VS-A94X-01 15 67500912 67500912 C T AAGAB Missense_Mutation p.D235N 0.24 tolerated(0.13) benign(0.048) TCGA-VS-A94X-01 15 75692451 75692451 G C SIN3A Missense_Mutation p.S595C 0.30 deleterious(0) probably_damaging(0.995) TCGA-VS-A94X-01 15 75977581 75977581 G C CSPG4 Silent p.L1417L 0.05 TCGA-VS-A94X-01 15 93570139 93570139 C T CHD2 3'UTR 0.35 TCGA-VS-A94X-01 16 16200723 16200756 CAGGGCAGGTGAGATTCGCTCCTTAAGTGATGAC T ABCC1 Splice_Site p.X955_splice 0.19 TCGA-VS-A94X-01 16 16418648 16418648 C T PKD1P1 RNA 0.22 TCGA-VS-A94X-01 16 21458432 21458432 A G CTD-2547E10.2 RNA 0.20 TCGA-VS-A94X-01 16 2712277 2712277 G C ERVK13-1 RNA 0.73 TCGA-VS-A94X-01 16 27585230 27585230 C G KIAA0556 Missense_Mutation p.L6V 0.27 deleterious_low_confidence(0.01) benign(0.277) TCGA-VS-A94X-01 16 30100452 30100452 G C TBX6 Missense_Mutation p.P145A 0.22 tolerated(0.2) probably_damaging(0.995) TCGA-VS-A94X-01 16 30733972 30733972 G A SRCAP Silent p.P1265P 0.30 TCGA-VS-A94X-01 16 3073472 3073472 C G HCFC1R1 Intron 0.16 TCGA-VS-A94X-01 16 34713019 34713019 G A RP11-80F22.9 RNA 0.23 TCGA-VS-A94X-01 16 4382323 4382323 C T GLIS2 Silent p.I14I 0.28 TCGA-VS-A94X-01 16 4384930 4384930 C G GLIS2 Silent p.L158L 0.24 TCGA-VS-A94X-01 16 455013 455013 G A DECR2 Silent p.E46E 0.39 TCGA-VS-A94X-01 16 55798673 55798673 C A CES1P1 RNA 0.31 TCGA-VS-A94X-01 16 66944335 66944335 C T CDH16 Silent p.L665L 0.33 TCGA-VS-A94X-01 16 67314216 67314216 C G PLEKHG4 Missense_Mutation p.S90C 0.45 tolerated(0.07) possibly_damaging(0.711) TCGA-VS-A94X-01 16 69600254 69600254 C A NFAT5 Nonsense_Mutation p.S17* 0.27 TCGA-VS-A94X-01 16 69732440 69732440 C G NFAT5 3'UTR 0.04 TCGA-VS-A94X-01 16 70191633 70191633 G A PDPR 3'UTR 0.22 TCGA-VS-A94X-01 16 70928351 70928351 C T HYDIN Splice_Site p.X3083_splice 0.24 TCGA-VS-A94X-01 16 81214905 81214905 G T PKD1L2 5'UTR 0.31 TCGA-VS-A94X-01 16 88782205 88782205 G C PIEZO1 Missense_Mutation p.F2458L 0.57 deleterious(0) probably_damaging(0.981) TCGA-VS-A94X-01 16 89805691 89805691 G A FANCA Silent p.L1339L 0.16 TCGA-VS-A94X-01 16 89922584 89922584 G T SPIRE2 Nonsense_Mutation p.E348* 0.29 TCGA-VS-A94X-01 16 89977645 89977645 G A TCF25 Silent p.%3D 0.39 TCGA-VS-A94X-01 17 13399890 13399890 G A HS3ST3A1 Missense_Mutation p.S282L 0.54 deleterious(0.03) benign(0.071) TCGA-VS-A94X-01 17 1489310 1489310 G A SLC43A2 Silent p.L372L 0.26 TCGA-VS-A94X-01 17 1489329 1489329 G A SLC43A2 Silent p.S365S 0.22 TCGA-VS-A94X-01 17 17714066 17714066 G C RAI1 3'UTR 0.69 TCGA-VS-A94X-01 17 17716907 17716907 C A SREBF1 Missense_Mutation p.Q1056H 0.67 tolerated(0.35) benign(0.346) TCGA-VS-A94X-01 17 17722445 17722445 G A SREBF1 Missense_Mutation p.S347F 0.77 tolerated(0.67) benign(0.043) TCGA-VS-A94X-01 17 18157479 18157479 G A FLII Missense_Mutation p.T198M 0.07 tolerated(0.12) benign(0.042) TCGA-VS-A94X-01 17 18566269 18566269 G C ZNF286B Missense_Mutation p.L184V 0.09 tolerated(0.15) possibly_damaging(0.659) TCGA-VS-A94X-01 17 37070622 37070622 C T LASP1 Silent p.S134S 0.08 TCGA-VS-A94X-01 17 37687065 37687065 G C CDK12 Missense_Mutation p.L1323F 0.39 possibly_damaging(0.643) TCGA-VS-A94X-01 17 44841856 44841856 C T WNT3 3'UTR 0.14 TCGA-VS-A94X-01 17 45918651 45918651 G A SCRN2 5'UTR 0.24 TCGA-VS-A94X-01 17 48133890 48133890 C A ITGA3 Silent p.V29V 0.37 TCGA-VS-A94X-01 17 54969456 54969456 G A TRIM25 Nonsense_Mutation p.Q500* 0.27 TCGA-VS-A94X-01 17 59793381 59793381 C T BRIP1 Missense_Mutation p.R808K 0.44 tolerated(0.06) benign(0.422) TCGA-VS-A94X-01 17 67111596 67111596 G C ABCA6 Missense_Mutation p.I509M 0.18 deleterious(0) probably_damaging(0.942) TCGA-VS-A94X-01 17 7106063 7106063 G T DLG4 Intron 0.15 TCGA-VS-A94X-01 17 7643069 7643069 C T DNAH2 Missense_Mutation p.H397Y 0.31 probably_damaging(0.952) TCGA-VS-A94X-01 17 77681216 77681216 G C CTD-2116F7.1 RNA 0.18 TCGA-VS-A94X-01 17 78972212 78972212 A T CHMP6 Missense_Mutation p.K181M 0.25 deleterious(0.01) benign(0.001) TCGA-VS-A94X-01 17 8396297 8396297 C T MYH10 Missense_Mutation p.E1419K 0.58 benign(0.423) TCGA-VS-A94X-01 17 9631564 9631564 G A USP43 Missense_Mutation p.E877K 0.71 tolerated(0.22) benign(0.022) TCGA-VS-A94X-01 18 46284337 46284337 A G CTIF Missense_Mutation p.D211G 0.27 tolerated_low_confidence(0.14) benign(0.007) TCGA-VS-A94X-01 19 11998717 11998717 C T ZNF69 5'UTR 0.50 TCGA-VS-A94X-01 19 1221995 1221995 C T STK11 Missense_Mutation p.R304W 0.44 deleterious(0) probably_damaging(0.998) TCGA-VS-A94X-01 19 15483039 15483039 G A AKAP8 Silent p.F327F 0.44 TCGA-VS-A94X-01 19 33588697 33588697 G A GPATCH1 Missense_Mutation p.D297N 0.24 deleterious(0) probably_damaging(0.947) TCGA-VS-A94X-01 19 39994836 39994836 C T DLL3 Missense_Mutation p.P260S 0.52 tolerated(0.39) benign(0.007) TCGA-VS-A94X-01 19 4054036 4054036 G A ZBTB7A Nonsense_Mutation p.R399* 0.44 TCGA-VS-A94X-01 19 42791024 42791024 G T CIC Nonsense_Mutation p.E57* 0.19 TCGA-VS-A94X-01 19 42848852 42848852 C G MEGF8 Nonsense_Mutation p.S655* 0.17 TCGA-VS-A94X-01 19 43858471 43858471 C A CD177 Missense_Mutation p.F102L 0.27 tolerated(0.09) benign(0.115) TCGA-VS-A94X-01 19 44936490 44936490 C G ZNF229 Missense_Mutation p.E49Q 0.15 deleterious(0.03) benign(0.042) TCGA-VS-A94X-01 19 45392134 45392134 C G PVRL2 3'UTR 0.13 TCGA-VS-A94X-01 19 47260574 47260574 G A FKRP 3'UTR 0.10 TCGA-VS-A94X-01 19 47260969 47260969 G T FKRP 3'UTR 0.19 TCGA-VS-A94X-01 19 47261299 47261299 G A FKRP 3'UTR 0.26 TCGA-VS-A94X-01 19 47261427 47261427 G C FKRP 3'UTR 0.24 TCGA-VS-A94X-01 19 47544369 47544369 C G NPAS1 Silent p.V401V 0.22 TCGA-VS-A94X-01 19 48205629 48205629 C G GLTSCR1 Missense_Mutation p.S1547C 0.24 probably_damaging(0.995) TCGA-VS-A94X-01 19 48382332 48382332 C T SULT2A1 Silent p.E176E 0.14 TCGA-VS-A94X-01 19 48725068 48725068 C T CARD8 Silent p.Q360Q 0.24 TCGA-VS-A94X-01 19 49639092 49639092 C T PPFIA3 Missense_Mutation p.S526F 0.16 tolerated(0.13) benign(0.169) TCGA-VS-A94X-01 19 49973653 49973653 G A ALDH16A1 Missense_Mutation p.E780K 0.19 tolerated(0.18) benign(0.003) TCGA-VS-A94X-01 19 54972420 54972420 C T LENG8 3'UTR 0.10 TCGA-VS-A94X-01 19 55866691 55866691 C G FAM71E2 Missense_Mutation p.E916Q 0.22 tolerated_low_confidence(0.37) possibly_damaging(0.557) TCGA-VS-A94X-01 19 56089652 56089652 G A ZNF579 Missense_Mutation p.R452C 0.46 deleterious(0) probably_damaging(0.94) TCGA-VS-A94X-01 19 56206640 56206640 C G EPN1 Missense_Mutation p.S636C 0.07 deleterious(0) probably_damaging(0.997) TCGA-VS-A94X-01 19 56388465 56388465 G A NLRP4 Missense_Mutation p.G877R 0.36 tolerated(0.23) possibly_damaging(0.611) TCGA-VS-A94X-01 19 58453169 58453169 G C ZNF256 Missense_Mutation p.S336C 0.17 deleterious(0.01) benign(0.332) TCGA-VS-A94X-01 19 9063204 9063204 G C MUC16 Missense_Mutation p.S8081C 0.42 unknown(0) TCGA-VS-A94X-01 19 9063631 9063631 G C MUC16 Missense_Mutation p.Q7939E 0.57 unknown(0) TCGA-VS-A94X-01 19 9064019 9064019 G T MUC16 Silent p.L7809L 0.52 TCGA-VS-A94X-01 1 109756695 109756695 C G SARS Missense_Mutation p.F27L 0.31 deleterious(0.04) possibly_damaging(0.841) TCGA-VS-A94X-01 1 120342390 120342390 C G REG4 Missense_Mutation p.Q87H 0.19 deleterious(0) probably_damaging(0.995) TCGA-VS-A94X-01 1 145301775 145301775 C G NBPF10 Missense_Mutation p.F348L 0.05 benign(0.102) TCGA-VS-A94X-01 1 145417041 145417041 G T HFE2 3'UTR 0.17 TCGA-VS-A94X-01 1 145438820 145438820 G A TXNIP Silent p.K6K 0.18 TCGA-VS-A94X-01 1 152079788 152079788 C T TCHH 3'UTR 0.14 TCGA-VS-A94X-01 1 152081101 152081101 C T TCHH Missense_Mutation p.R1531K 0.19 unknown(0) TCGA-VS-A94X-01 1 152082317 152082317 C T TCHH Missense_Mutation p.E1126K 0.18 unknown(0) TCGA-VS-A94X-01 1 153945262 153945262 C G CREB3L4 Missense_Mutation p.L196V 0.14 deleterious(0) probably_damaging(0.998) TCGA-VS-A94X-01 1 154951497 154951497 G A CKS1B 3'UTR 0.13 TCGA-VS-A94X-01 1 155041854 155041854 C T EFNA4 3'UTR 0.12 TCGA-VS-A94X-01 1 156595024 156595024 G A HAPLN2 Missense_Mutation p.D291N 0.21 tolerated(0.08) benign(0.385) TCGA-VS-A94X-01 1 156622576 156622576 G A BCAN Missense_Mutation p.E612K 0.11 tolerated(0.75) benign(0.017) TCGA-VS-A94X-01 1 161721665 161721665 G C DUSP12 Missense_Mutation p.E156D 0.11 tolerated(0.2) benign(0.346) TCGA-VS-A94X-01 1 161771970 161771970 G A ATF6 Missense_Mutation p.V273I 0.22 tolerated(0.21) benign(0.04) TCGA-VS-A94X-01 1 16353081 16353081 G A CLCNKA Silent p.V183V 0.09 TCGA-VS-A94X-01 1 16719946 16719946 G A SZRD1 Missense_Mutation p.E109K 0.12 deleterious(0) benign(0.335) TCGA-VS-A94X-01 1 168212018 168212018 C G SFT2D2 3'UTR 0.28 TCGA-VS-A94X-01 1 169505843 169505843 G A F5 Silent p.L1624L 0.15 TCGA-VS-A94X-01 1 179077046 179077046 T C ABL2 Missense_Mutation p.Y1119C 0.12 tolerated_low_confidence(0.09) benign(0.119) TCGA-VS-A94X-01 1 179620037 179620037 G C TDRD5 Missense_Mutation p.Q612H 0.40 deleterious(0.02) benign(0.132) TCGA-VS-A94X-01 1 180166491 180166491 C T QSOX1 3'UTR 0.23 TCGA-VS-A94X-01 1 183595584 183595584 G A ARPC5 3'Flank 0.14 TCGA-VS-A94X-01 1 193029056 193029056 C A UCHL5 5'Flank 0.18 TCGA-VS-A94X-01 1 19651161 19651161 G C PQLC2 Missense_Mutation p.D67H 0.32 tolerated(0.14) possibly_damaging(0.816) TCGA-VS-A94X-01 1 197126853 197126853 C G ZBTB41 3'UTR 0.18 TCGA-VS-A94X-01 1 20209165 20209165 C A OTUD3 Missense_Mutation p.F53L 0.20 deleterious(0.02) benign(0.09) TCGA-VS-A94X-01 1 20998428 20998428 G C KIF17 Intron 0.34 TCGA-VS-A94X-01 1 210416320 210416320 G A SERTAD4 3'UTR 0.12 TCGA-VS-A94X-01 1 213124953 213124953 G C VASH2 Silent p.R23R 0.26 TCGA-VS-A94X-01 1 216677389 216677389 C G ESRRG 3'UTR 0.14 TCGA-VS-A94X-01 1 22448009 22448009 G C WNT4 Missense_Mutation p.T125R 0.12 deleterious(0) probably_damaging(0.999) TCGA-VS-A94X-01 1 224621435 224621435 C T WDR26 Missense_Mutation p.E125K 0.16 tolerated(0.12) benign(0.024) TCGA-VS-A94X-01 1 236646750 236646750 G C EDARADD 3'Flank 0.13 TCGA-VS-A94X-01 1 237886491 237886491 G A RYR2 Missense_Mutation p.D3540N 0.09 benign(0.12) TCGA-VS-A94X-01 1 24140802 24140802 G C HMGCL Silent p.V125V 0.28 TCGA-VS-A94X-01 1 247921004 247921004 C G OR1C1 Missense_Mutation p.Q235H 0.14 tolerated(0.35) benign(0.008) TCGA-VS-A94X-01 1 26524194 26524194 C G CATSPER4 Silent p.L159L 0.34 TCGA-VS-A94X-01 1 26524508 26524508 C T CATSPER4 Silent p.V206V 0.33 TCGA-VS-A94X-01 1 26800443 26800443 G C HMGN2 Intron 0.30 TCGA-VS-A94X-01 1 26801102 26801102 G C HMGN2 Missense_Mutation p.D61H 0.30 deleterious(0) probably_damaging(0.988) TCGA-VS-A94X-01 1 26801776 26801776 G A HMGN2 3'UTR 0.27 TCGA-VS-A94X-01 1 27877708 27877708 G A AHDC1 Silent p.L307L 0.35 TCGA-VS-A94X-01 1 29631875 29631875 C T PTPRU Nonsense_Mutation p.R929* 0.42 TCGA-VS-A94X-01 1 32502584 32502584 G A KHDRBS1 Missense_Mutation p.R282H 0.26 deleterious(0.02) possibly_damaging(0.848) TCGA-VS-A94X-01 1 33765443 33765443 C T ZNF362 3'UTR 0.09 TCGA-VS-A94X-01 1 39384872 39384872 G C RHBDL2 Missense_Mutation p.H5D 0.34 tolerated_low_confidence(0.16) benign(0.001) TCGA-VS-A94X-01 1 45794250 45794250 G A HPDL 3'UTR 0.31 TCGA-VS-A94X-01 1 46809111 46809111 C T NSUN4 Intron 0.45 TCGA-VS-A94X-01 1 47152500 47152500 G A EFCAB14 Nonsense_Mutation p.Q344* 0.21 TCGA-VS-A94X-01 1 53153487 53153487 C G COA7 Missense_Mutation p.D201H 0.22 deleterious(0.02) benign(0.409) TCGA-VS-A94X-01 1 53737010 53737010 C G LRP8 Missense_Mutation p.E339Q 0.10 deleterious(0.01) probably_damaging(1) TCGA-VS-A94X-01 1 55075417 55075417 G A FAM151A Silent p.L428L 0.22 TCGA-VS-A94X-01 1 7812557 7812557 G A CAMTA1 Missense_Mutation p.R1641Q 0.29 deleterious(0.02) probably_damaging(0.99) TCGA-VS-A94X-01 1 8419821 8419821 C G RERE Intron 0.33 TCGA-VS-A94X-01 1 84403636 84403636 C G TTLL7 Missense_Mutation p.D263H 0.27 tolerated(0.06) benign(0.2) TCGA-VS-A94X-01 1 949439 949439 G T ISG15 Nonsense_Mutation p.E27* 0.25 TCGA-VS-A94X-01 20 13867002 13867002 C A SEL1L2 Nonsense_Mutation p.E278* 0.19 TCGA-VS-A94X-01 20 1456761 1456761 G T SIRPB2 3'UTR 0.12 TCGA-VS-A94X-01 20 22562728 22562728 G C FOXA2 Missense_Mutation p.I384M 0.31 deleterious(0) probably_damaging(0.999) TCGA-VS-A94X-01 20 29891077 29891077 C T DEFB116 Missense_Mutation p.E83K 0.24 tolerated(0.65) benign(0.001) TCGA-VS-A94X-01 20 308743 308743 G C SOX12 3'UTR 0.23 TCGA-VS-A94X-01 20 31656768 31656768 G C BPIFB3 Missense_Mutation p.E380Q 0.13 tolerated(0.6) benign(0.01) TCGA-VS-A94X-01 20 32246324 32246324 G A NECAB3 Silent p.F343F 0.19 TCGA-VS-A94X-01 20 34291635 34291635 G C RBM39 3'UTR 0.11 TCGA-VS-A94X-01 20 35627167 35627167 G A RBL1 Missense_Mutation p.H1068Y 0.15 deleterious(0.01) benign(0.03) TCGA-VS-A94X-01 20 36147618 36147618 C A BLCAP 5'UTR 0.32 TCGA-VS-A94X-01 20 3652349 3652349 G C ADAM33 Missense_Mutation p.S595C 0.23 deleterious(0) probably_damaging(0.987) TCGA-VS-A94X-01 20 36611909 36611909 C G TTI1 Missense_Mutation p.Q1073H 0.18 tolerated(0.11) possibly_damaging(0.579) TCGA-VS-A94X-01 20 37555226 37555226 C T FAM83D Silent p.F77F 0.27 TCGA-VS-A94X-01 20 42744328 42744328 C G JPH2 Missense_Mutation p.E663Q 0.42 tolerated(0.39) benign(0.021) TCGA-VS-A94X-01 20 44463618 44463618 G A SNX21 Missense_Mutation p.G104R 0.27 tolerated(0.14) benign(0.025) TCGA-VS-A94X-01 20 44470377 44470377 C G ACOT8 3'UTR 0.16 TCGA-VS-A94X-01 20 44669194 44669194 C G SLC12A5 Silent p.L288L 0.19 TCGA-VS-A94X-01 20 47730039 47730039 G C STAU1 3'Flank 0.13 TCGA-VS-A94X-01 20 47863655 47863655 C T ZNFX1 3'UTR 0.16 TCGA-VS-A94X-01 20 57415719 57415719 G C RP4-806M20.3 5'Flank 0.17 TCGA-VS-A94X-01 20 58520214 58520214 C G FAM217B 3'UTR 0.23 TCGA-VS-A94X-01 20 60714213 60714213 G A PSMA7 Missense_Mutation p.S130F 0.22 deleterious(0) probably_damaging(0.998) TCGA-VS-A94X-01 20 61572970 61572970 C G GID8 Missense_Mutation p.T39R 0.07 deleterious(0.04) probably_damaging(0.918) TCGA-VS-A94X-01 20 61596979 61596979 C T SLC17A9 Silent p.L321L 0.20 TCGA-VS-A94X-01 21 30365082 30365082 C T LTN1 Intron 0.21 TCGA-VS-A94X-01 21 34143689 34143689 C T PAXBP1 Silent p.E97E 0.33 TCGA-VS-A94X-01 21 35743266 35743266 G A KCNE2 3'UTR 0.35 TCGA-VS-A94X-01 21 35791908 35791908 C T AP000322.53 Missense_Mutation p.E10K 0.26 tolerated_low_confidence(0.21) benign(0.023) TCGA-VS-A94X-01 21 38123681 38123681 G A HLCS 3'UTR 0.24 TCGA-VS-A94X-01 21 39580324 39580324 C G DSCR10 RNA 0.35 TCGA-VS-A94X-01 21 40769013 40769013 G C WRB 3'UTR 0.31 TCGA-VS-A94X-01 22 21355620 21355620 C A THAP7 Missense_Mutation p.W54L 0.46 deleterious(0) probably_damaging(0.996) TCGA-VS-A94X-01 22 30032794 30032794 C T NF2 Nonsense_Mutation p.R57* 0.61 TCGA-VS-A94X-01 22 38369659 38369659 G A SOX10 Missense_Mutation p.S415L 0.48 deleterious(0.01) benign(0.146) TCGA-VS-A94X-01 22 38616761 38616761 G A TMEM184B 3'UTR 0.45 TCGA-VS-A94X-01 2 10095181 10095181 G A GRHL1 Missense_Mutation p.G53E 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A94X-01 2 12858562 12858562 C T TRIB2 Silent p.L43L 0.23 TCGA-VS-A94X-01 2 152320293 152320293 G A RIF1 Missense_Mutation p.R1420Q 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A94X-01 2 160624113 160624113 G A MARCH7 3'UTR 0.04 TCGA-VS-A94X-01 2 165946824 165946824 C G SCN3A Missense_Mutation p.D1947H 0.12 tolerated(0.41) possibly_damaging(0.715) TCGA-VS-A94X-01 2 169020257 169020257 C G STK39 Missense_Mutation p.Q188H 0.26 tolerated(0.28) possibly_damaging(0.856) TCGA-VS-A94X-01 2 170939500 170939500 G C UBR3 3'UTR 0.33 TCGA-VS-A94X-01 2 172928490 172928490 G A METAP1D Missense_Mutation p.D84N 0.27 tolerated(0.1) possibly_damaging(0.858) TCGA-VS-A94X-01 2 177037474 177037474 C G HOXD3 3'UTR 0.33 TCGA-VS-A94X-01 2 179501322 179501322 G C TTN Missense_Mutation p.S13711C 0.37 TCGA-VS-A94X-01 2 220161158 220161158 C T PTPRN Intron 0.35 TCGA-VS-A94X-01 2 228012244 228012244 C A COL4A4 5'UTR 0.29 TCGA-VS-A94X-01 2 228855876 228855876 C T SPHKAP Missense_Mutation p.G1600E 0.18 tolerated(0.15) benign(0.232) TCGA-VS-A94X-01 2 230875554 230875554 G A FBXO36 Missense_Mutation p.R174H 0.32 tolerated(0.05) possibly_damaging(0.684) TCGA-VS-A94X-01 2 234774885 234774885 G C MSL3P1 RNA 0.09 TCGA-VS-A94X-01 2 238243376 238243376 G A COL6A3 Missense_Mutation p.T3041M 0.37 unknown(0) TCGA-VS-A94X-01 2 25050772 25050772 C G ADCY3 Missense_Mutation p.D811H 0.19 tolerated(0.09) possibly_damaging(0.573) TCGA-VS-A94X-01 2 25456659 25456659 A C DNMT3A 3'UTR 0.17 TCGA-VS-A94X-01 2 27801265 27801265 G A C2orf16 Missense_Mutation p.G609E 0.05 deleterious(0.01) benign(0.001) TCGA-VS-A94X-01 2 39453002 39453002 C T CDKL4 Missense_Mutation p.E90K 0.14 deleterious(0.02) possibly_damaging(0.58) TCGA-VS-A94X-01 2 44531183 44531183 C T SLC3A1 Intron 0.22 TCGA-VS-A94X-01 2 54014075 54014075 G C GPR75-ASB3 Intron 0.38 TCGA-VS-A94X-01 2 55582733 55582733 C T CCDC88A Missense_Mutation p.R261K 0.39 deleterious(0) possibly_damaging(0.908) TCGA-VS-A94X-01 2 55831137 55831137 C T SMEK2 Missense_Mutation p.E92K 0.18 tolerated(0.07) possibly_damaging(0.852) TCGA-VS-A94X-01 2 74128448 74128448 G C ACTG2 Missense_Mutation p.E4Q 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.668) TCGA-VS-A94X-01 2 74641436 74641436 C G C2orf81 3'UTR 0.14 TCGA-VS-A94X-01 2 86947866 86947866 G C RMND5A Missense_Mutation p.E26Q 0.19 tolerated(0.41) benign(0.032) TCGA-VS-A94X-01 2 9547223 9547223 C G ITGB1BP1 Intron 0.62 TCGA-VS-A94X-01 2 95540663 95540663 G T TEKT4 Missense_Mutation p.D286Y 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-VS-A94X-01 3 10074513 10074513 C A FANCD2 Intron 0.40 TCGA-VS-A94X-01 3 10074557 10074557 C G FANCD2 Missense_Mutation p.H36D 0.37 tolerated(0.61) benign(0.133) TCGA-VS-A94X-01 3 108163603 108163603 C T MYH15 Missense_Mutation p.E867K 0.17 tolerated(0.1) probably_damaging(0.997) TCGA-VS-A94X-01 3 112299522 112299522 C T SLC35A5 Silent p.F186F 0.18 TCGA-VS-A94X-01 3 121980722 121980722 C T CASR Silent p.I280I 0.15 TCGA-VS-A94X-01 3 127340586 127340586 G A MCM2 Silent p.L895L 0.18 TCGA-VS-A94X-01 3 133465267 133465267 C T TF 5'UTR 0.21 TCGA-VS-A94X-01 3 137893711 137893711 C T DBR1 5'UTR 0.14 TCGA-VS-A94X-01 3 142680087 142680087 C T PAQR9 3'UTR 0.19 TCGA-VS-A94X-01 3 15497504 15497504 T G COLQ Missense_Mutation p.D366A 0.23 deleterious(0.01) unknown(0) TCGA-VS-A94X-01 3 155215112 155215112 C T PLCH1 Missense_Mutation p.D619N 0.05 tolerated(0.07) probably_damaging(0.992) TCGA-VS-A94X-01 3 169574508 169574508 C T LRRC31 Missense_Mutation p.D214N 0.19 deleterious(0) probably_damaging(1) TCGA-VS-A94X-01 3 184041347 184041347 G A EIF4G1 Missense_Mutation p.R754Q 0.19 tolerated(0.51) benign(0.056) TCGA-VS-A94X-01 3 184603931 184603931 C T VPS8 Silent p.L590L 0.23 TCGA-VS-A94X-01 3 186507496 186507496 G T EIF4A2 3'UTR 0.29 TCGA-VS-A94X-01 3 186760581 186760581 G C ST6GAL1 Missense_Mutation p.K30N 0.20 possibly_damaging(0.478) TCGA-VS-A94X-01 3 195510719 195510719 G A MUC4 Missense_Mutation p.P2578S 0.11 probably_damaging(0.958) TCGA-VS-A94X-01 3 195510815 195510815 G A MUC4 Missense_Mutation p.H2546Y 0.09 benign(0.051) TCGA-VS-A94X-01 3 195511315 195511315 G C MUC4 Nonsense_Mutation p.S2379* 0.05 TCGA-VS-A94X-01 3 195512863 195512863 G A MUC4 Missense_Mutation p.S1863F 0.10 unknown(0) TCGA-VS-A94X-01 3 195514828 195514828 G C MUC4 Nonsense_Mutation p.S1208* 0.26 TCGA-VS-A94X-01 3 195518105 195518105 G A MUC4 Missense_Mutation p.P116S 0.21 unknown(0) TCGA-VS-A94X-01 3 196158567 196158567 C G UBXN7 Intron 0.20 TCGA-VS-A94X-01 3 42261029 42261029 C T TRAK1 Silent p.F669F 0.25 TCGA-VS-A94X-01 3 42703022 42703022 G T ZBTB47 Nonsense_Mutation p.E507* 0.32 TCGA-VS-A94X-01 3 47036876 47036876 G C NBEAL2 Missense_Mutation p.E551Q 0.10 tolerated(0.41) possibly_damaging(0.76) TCGA-VS-A94X-01 3 47912739 47912739 C G MAP4 Missense_Mutation p.K848N 0.32 deleterious(0) probably_damaging(0.964) TCGA-VS-A94X-01 3 49680414 49680414 G A BSN Silent p.S449S 0.29 TCGA-VS-A94X-01 3 49692543 49692543 C G BSN Missense_Mutation p.H1852D 0.31 unknown(0) TCGA-VS-A94X-01 3 52514532 52514532 C T NISCH Intron 0.41 TCGA-VS-A94X-01 3 66449402 66449402 C T LRIG1 Silent p.L408L 0.38 TCGA-VS-A94X-01 3 8794894 8794894 G A OXTR Silent p.I313I 0.24 TCGA-VS-A94X-01 4 100844284 100844284 C T DNAJB14 Missense_Mutation p.E122K 0.32 deleterious(0.01) possibly_damaging(0.799) TCGA-VS-A94X-01 4 104119467 104119467 C T CENPE Missense_Mutation p.E4K 0.30 possibly_damaging(0.616) TCGA-VS-A94X-01 4 108866560 108866560 C T CYP2U1 Silent p.L309L 0.19 TCGA-VS-A94X-01 4 114276930 114276930 G C ANK2 Missense_Mutation p.E2386Q 0.40 benign(0.053) TCGA-VS-A94X-01 4 124323229 124323229 G A SPRY1 Silent p.L161L 0.20 TCGA-VS-A94X-01 4 138441146 138441146 G A PCDH18 3'UTR 0.28 TCGA-VS-A94X-01 4 138442267 138442267 G A PCDH18 Silent p.L1108L 0.47 TCGA-VS-A94X-01 4 145567947 145567947 G A HHIP Silent p.L40L 0.15 TCGA-VS-A94X-01 4 158256933 158256933 C A GRIA2 Missense_Mutation p.F459L 0.24 tolerated(0.33) benign(0.06) TCGA-VS-A94X-01 4 159627459 159627459 G C ETFDH Missense_Mutation p.M468I 0.25 tolerated(0.64) benign(0.173) TCGA-VS-A94X-01 4 186598358 186598358 G C SORBS2 Intron 0.31 TCGA-VS-A94X-01 4 3430005 3430005 C T RGS12 Intron 0.20 TCGA-VS-A94X-01 4 40892491 40892491 C G APBB2 Silent p.L473L 0.39 TCGA-VS-A94X-01 5 112174043 112174043 G A APC Missense_Mutation p.E918K 0.29 benign(0.297) TCGA-VS-A94X-01 5 112174736 112174736 G A APC Missense_Mutation p.E1149K 0.19 probably_damaging(0.999) TCGA-VS-A94X-01 5 129521303 129521303 G A CHSY3 Missense_Mutation p.R823K 0.19 deleterious(0) probably_damaging(0.999) TCGA-VS-A94X-01 5 132086614 132086614 G T CCNI2 Silent p.L233L 0.23 TCGA-VS-A94X-01 5 133492668 133492668 T A SKP1 3'UTR 0.19 TCGA-VS-A94X-01 5 140232562 140232562 C G PCDHA9 Intron 0.40 TCGA-VS-A94X-01 5 140593631 140593631 C T PCDHB13 5'UTR 0.27 TCGA-VS-A94X-01 5 14405969 14405969 G C TRIO Missense_Mutation p.E1577Q 0.21 benign(0.306) TCGA-VS-A94X-01 5 148747746 148747746 C T PCYOX1L Silent p.H338H 0.32 TCGA-VS-A94X-01 5 149778584 149778584 G C TCOF1 Splice_Site p.X1481_splice 0.36 TCGA-VS-A94X-01 5 150933995 150933995 G A FAT2 Silent p.F1291F 0.30 TCGA-VS-A94X-01 5 150934127 150934127 G C FAT2 Missense_Mutation p.F1247L 0.26 probably_damaging(0.999) TCGA-VS-A94X-01 5 160721114 160721114 C T GABRB2 Missense_Mutation p.V505I 0.27 tolerated(0.58) benign(0.044) TCGA-VS-A94X-01 5 175772440 175772440 G A SIMC1 Missense_Mutation p.G456S 0.26 tolerated_low_confidence(1) benign(0) TCGA-VS-A94X-01 5 178564941 178564941 C T ADAMTS2 Missense_Mutation p.A594T 0.11 deleterious(0.03) possibly_damaging(0.58) TCGA-VS-A94X-01 5 179757731 179757731 G T GFPT2 Nonsense_Mutation p.S168* 0.45 TCGA-VS-A94X-01 5 37157891 37157891 G A C5orf42 Missense_Mutation p.S2613L 0.13 tolerated(0.09) benign(0.009) TCGA-VS-A94X-01 5 75505671 75505671 T C SV2C Missense_Mutation p.I291T 0.28 deleterious(0) possibly_damaging(0.765) TCGA-VS-A94X-01 5 79032700 79032700 A G CMYA5 Silent p.G2704G 0.26 TCGA-VS-A94X-01 6 101312034 101312034 C T ASCC3 Silent p.K49K 0.25 TCGA-VS-A94X-01 6 10415039 10415039 G C TFAP2A Intron 0.36 TCGA-VS-A94X-01 6 10415108 10415108 G A TFAP2A Intron 0.20 TCGA-VS-A94X-01 6 112397616 112397616 T C TUBE1 Missense_Mutation p.E182G 0.31 deleterious(0.01) possibly_damaging(0.689) TCGA-VS-A94X-01 6 117114361 117114361 C G GPRC6A Missense_Mutation p.R575S 0.21 tolerated(0.23) benign(0.044) TCGA-VS-A94X-01 6 130497090 130497090 C T SAMD3 Missense_Mutation p.E240K 0.27 tolerated(0.09) probably_damaging(0.989) TCGA-VS-A94X-01 6 135376000 135376000 G A HBS1L 5'UTR 0.26 TCGA-VS-A94X-01 6 146997502 146997502 G C ADGB Missense_Mutation p.E381Q 0.25 deleterious(0.01) benign(0.075) TCGA-VS-A94X-01 6 150290414 150290414 C G ULBP1 Missense_Mutation p.F181L 0.26 tolerated(0.13) benign(0.223) TCGA-VS-A94X-01 6 24476425 24476425 G A GPLD1 Missense_Mutation p.P105L 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A94X-01 6 26045750 26045750 A T HIST1H3C Nonsense_Mutation p.K38* 0.23 TCGA-VS-A94X-01 6 32148971 32148971 C A AGER Silent p.L388L 0.47 TCGA-VS-A94X-01 6 35248906 35248906 G C ZNF76 5'UTR 0.32 TCGA-VS-A94X-01 6 38863806 38863806 C G DNAH8 Intron 0.10 TCGA-VS-A94X-01 6 41304101 41304101 G A NCR2 Missense_Mutation p.R110K 0.30 tolerated(0.96) benign(0.068) TCGA-VS-A94X-01 6 52993110 52993110 G A GCM1 Missense_Mutation p.S402L 0.38 tolerated(0.07) benign(0.02) TCGA-VS-A94X-01 6 56394330 56394330 C T DST Silent p.L3214L 0.21 TCGA-VS-A94X-01 6 70840081 70840081 A G COL19A1 Missense_Mutation p.D450G 0.37 tolerated(1) benign(0.001) TCGA-VS-A94X-01 6 7580024 7580024 G A DSP Missense_Mutation p.E1201K 0.32 probably_damaging(0.991) TCGA-VS-A94X-01 6 82933293 82933293 G A IBTK Missense_Mutation p.R330C 0.40 deleterious(0) benign(0.068) TCGA-VS-A94X-01 7 101833102 101833102 G A CUX1 Missense_Mutation p.E354K 0.24 deleterious(0.04) unknown(0) TCGA-VS-A94X-01 7 111449458 111449458 C G DOCK4 Splice_Site p.X1003_splice 0.29 TCGA-VS-A94X-01 7 113518743 113518743 C TT PPP1R3A Frame_Shift_Ins p.E802Kfs*10 0.19 TCGA-VS-A94X-01 7 114658805 114658805 C T MDFIC 3'UTR 0.33 TCGA-VS-A94X-01 7 128494512 128494512 C T FLNC Missense_Mutation p.S2258L 0.31 deleterious(0) benign(0.171) TCGA-VS-A94X-01 7 129663403 129663403 G C ZC3HC1 Missense_Mutation p.S394C 0.21 deleterious(0) probably_damaging(0.999) TCGA-VS-A94X-01 7 149528224 149528224 A G SSPO Intron 0.11 TCGA-VS-A94X-01 7 20198757 20198758 TC A MACC1 Frame_Shift_Del p.G409Vfs*25 0.27 TCGA-VS-A94X-01 7 20198993 20198993 C G MACC1 Missense_Mutation p.D331H 0.15 deleterious(0) probably_damaging(0.999) TCGA-VS-A94X-01 7 21678623 21678623 C T DNAH11 Silent p.F1633F 0.27 TCGA-VS-A94X-01 7 8257995 8257995 C T ICA1 Missense_Mutation p.M173I 0.30 deleterious(0.02) probably_damaging(1) TCGA-VS-A94X-01 7 83643614 83643614 C G SEMA3A Missense_Mutation p.D241H 0.31 deleterious(0) probably_damaging(0.998) TCGA-VS-A94X-01 7 97841924 97841924 C G BHLHA15 Silent p.V101V 0.24 TCGA-VS-A94X-01 8 102731782 102731782 C T NCALD Missense_Mutation p.E26K 0.34 deleterious(0) probably_damaging(1) TCGA-VS-A94X-01 8 107719139 107719139 C G OXR1 Missense_Mutation p.Q465E 0.14 tolerated(1) benign(0) TCGA-VS-A94X-01 8 124238837 124238837 G T C8orf76 Nonsense_Mutation p.S284* 0.20 TCGA-VS-A94X-01 8 133935752 133935752 G T TG Missense_Mutation p.L1566F 0.25 deleterious(0.01) possibly_damaging(0.878) TCGA-VS-A94X-01 8 36763303 36763303 C G KCNU1 Missense_Mutation p.S696C 0.25 deleterious(0) possibly_damaging(0.619) TCGA-VS-A94X-01 8 38194928 38194928 G C WHSC1L1 Missense_Mutation p.Q269E 0.21 tolerated(1) benign(0.001) TCGA-VS-A94X-01 8 38854608 38854608 C A ADAM9 Nonsense_Mutation p.S9* 0.30 TCGA-VS-A94X-01 8 41166526 41166526 G C SFRP1 Missense_Mutation p.F51L 0.51 tolerated(0.31) benign(0.006) TCGA-VS-A94X-01 8 53555119 53555119 G A RB1CC1 Missense_Mutation p.R1377C 0.26 tolerated(0.05) possibly_damaging(0.553) TCGA-VS-A94X-01 8 57092047 57092047 C T PLAG1 5'UTR 0.75 TCGA-VS-A94X-01 8 68178437 68178441 CCTGA - ARFGEF1 Frame_Shift_Del p.Q642Kfs*9 0.16 TCGA-VS-A94X-01 8 72123449 72123449 C G EYA1 Missense_Mutation p.R547T 0.08 tolerated(0.08) probably_damaging(0.992) TCGA-VS-A94X-01 9 100888960 100888960 C A CORO2A Missense_Mutation p.W439C 0.47 tolerated(0.16) benign(0.213) TCGA-VS-A94X-01 9 108226610 108226610 C T FSD1L Nonsense_Mutation p.Q69* 0.46 TCGA-VS-A94X-01 9 131846984 131846984 C T DOLPP1 Silent p.L38L 0.48 TCGA-VS-A94X-01 9 139820290 139820290 G C TRAF2 Missense_Mutation p.K481N 0.18 deleterious(0) benign(0.014) TCGA-VS-A94X-01 9 140176397 140176397 C T TOR4A 3'UTR 0.44 TCGA-VS-A94X-01 9 21440582 21440582 C T IFNA1 Missense_Mutation p.L26F 0.19 deleterious(0) probably_damaging(0.971) TCGA-VS-A94X-01 9 22452371 22452371 T C DMRTA1 3'UTR 0.27 TCGA-VS-A94X-01 9 22452373 22452373 T A DMRTA1 3'UTR 0.27 TCGA-VS-A94X-01 9 35607985 35607985 C A TESK1 Missense_Mutation p.P258T 0.67 deleterious(0.01) probably_damaging(1) TCGA-VS-A94X-01 9 5968276 5968276 G C KIAA2026 Missense_Mutation p.P652R 0.40 deleterious(0.04) benign(0.165) TCGA-VS-A94X-01 9 73001313 73001313 C A KLF9 3'UTR 0.15 TCGA-VS-A94X-01 9 95152169 95152169 G C OGN Missense_Mutation p.I199M 0.21 deleterious(0.01) possibly_damaging(0.729) TCGA-VS-A94X-01 9 97717462 97717462 C A C9orf3 Silent p.P555P 0.08 TCGA-VS-A94X-01 X 101823414 101823414 C T NXF4 RNA 0.12 TCGA-VS-A94X-01 X 107512226 107512226 C G COL4A6 Intron 0.18 TCGA-VS-A94X-01 X 107512268 107512273 CAGCCT AAG COL4A6 Intron 0.19 TCGA-VS-A94X-01 X 107977392 107977392 G C IRS4 Nonsense_Mutation p.S728* 0.16 TCGA-VS-A94X-01 X 115594028 115594028 C A CT83 5'UTR 0.23 TCGA-VS-A94X-01 X 117578344 117578344 C T WDR44 Missense_Mutation p.S845L 0.13 deleterious(0.04) benign(0.441) TCGA-VS-A94X-01 X 118586040 118586040 C T SLC25A43 Silent p.F253F 0.12 TCGA-VS-A94X-01 X 118675371 118675371 C T CXorf56 Missense_Mutation p.D176N 0.16 deleterious(0.03) possibly_damaging(0.73) TCGA-VS-A94X-01 X 118675384 118675384 C T CXorf56 Splice_Site p.X172_splice 0.13 TCGA-VS-A94X-01 X 118753988 118753988 G T SEPT6 Intron 0.12 TCGA-VS-A94X-01 X 134425016 134425016 C G ZNF75D Missense_Mutation p.E248Q 0.17 deleterious(0) possibly_damaging(0.576) TCGA-VS-A94X-01 X 134427971 134427971 C T ZNF75D Silent p.Q32Q 0.11 TCGA-VS-A94X-01 X 134716049 134716049 A T DDX26B 3'UTR 0.18 TCGA-VS-A94X-01 X 140786580 140786580 C G SPANXD 5'UTR 0.07 TCGA-VS-A94X-01 X 144910768 144910768 G A TMEM257 3'UTR 0.04 TCGA-VS-A94X-01 X 150908115 150908115 C T CNGA2 Silent p.L95L 0.11 TCGA-VS-A94X-01 X 153227071 153227071 G C HCFC1 Missense_Mutation p.L276V 0.13 deleterious(0.04) probably_damaging(0.991) TCGA-VS-A94X-01 X 153582801 153582801 C T FLNA Silent p.L1788L 0.19 TCGA-VS-A94X-01 X 19008556 19008556 G C GPR64 3'UTR 0.22 TCGA-VS-A94X-01 X 21673930 21673930 C T KLHL34 3'UTR 0.20 TCGA-VS-A94X-01 X 22065244 22065244 G A PHEX Nonsense_Mutation p.W88* 0.05 TCGA-VS-A94X-01 X 37526733 37526733 G A LANCL3 Missense_Mutation p.R365Q 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-VS-A94X-01 X 46433455 46433455 C T CHST7 Missense_Mutation p.S30F 0.29 tolerated_low_confidence(0.25) benign(0.305) TCGA-VS-A94X-01 X 47919832 47919832 G A ZNF630 Missense_Mutation p.P79S 0.29 tolerated(1) benign(0) TCGA-VS-A94X-01 X 48046218 48046218 C T SSX5 3'UTR 0.17 TCGA-VS-A94X-01 X 48418578 48418578 G C TBC1D25 Missense_Mutation p.E428Q 0.27 deleterious(0) probably_damaging(0.966) TCGA-VS-A94X-01 X 48925605 48925605 C T CCDC120 Missense_Mutation p.T617M 0.35 deleterious(0.04) probably_damaging(0.991) TCGA-VS-A94X-01 X 54472134 54472134 G T FGD1 3'UTR 0.27 TCGA-VS-A94X-01 X 55102511 55102511 G A PAGE2B Missense_Mutation p.E13K 0.21 tolerated(0.41) benign(0.026) TCGA-VS-A94X-01 X 67339108 67339108 G T OPHN1 Missense_Mutation p.S448Y 0.13 deleterious(0.02) benign(0.068) TCGA-VS-A94X-01 X 67433751 67433751 G C OPHN1 Missense_Mutation p.Q184E 0.18 deleterious(0.05) possibly_damaging(0.459) TCGA-VS-A94X-01 X 69640578 69640578 G A KIF4A 3'UTR 0.16 TCGA-VS-A94X-01 X 70618566 70618566 G C TAF1 Missense_Mutation p.M1275I 0.17 tolerated(0.37) benign(0.004) TCGA-VS-A94X-01 X 73063231 73063231 G C XIST RNA 0.13 TCGA-VS-A94X-01 X 77268518 77268518 G C ATP7A Missense_Mutation p.R772T 0.11 deleterious(0.04) possibly_damaging(0.694) TCGA-VS-A94X-01 X 77305640 77305640 C A ATP7A 3'UTR 0.12 TCGA-VS-A94X-01 X 79281173 79281173 A G TBX22 Missense_Mutation p.Y177C 0.07 deleterious(0) probably_damaging(1) TCGA-VS-A94X-01 X 86873048 86873048 C T KLHL4 Missense_Mutation p.P281S 0.15 deleterious(0.02) possibly_damaging(0.806) TCGA-VS-A94X-01 X 8764386 8764386 C G FAM9A Missense_Mutation p.M137I 0.11 tolerated_low_confidence(0.45) benign(0.013) TCGA-VS-A94Y-01 10 128114644 128114644 C A C10orf90 Missense_Mutation p.L659F 0.26 deleterious(0.05) probably_damaging(0.999) TCGA-VS-A94Y-01 10 129906938 129906939 TG - MKI67 Frame_Shift_Del p.H1055Qfs*14 0.34 TCGA-VS-A94Y-01 10 32576092 32576092 T C EPC1 Silent p.P362P 0.26 TCGA-VS-A94Y-01 10 64979743 64979743 C T JMJD1C Missense_Mutation p.D150N 0.18 deleterious(0.03) possibly_damaging(0.735) TCGA-VS-A94Y-01 10 73050821 73050821 C T UNC5B Silent p.L417L 0.46 TCGA-VS-A94Y-01 10 74890605 74890605 C T NUDT13 Missense_Mutation p.H335Y 0.13 deleterious(0.04) probably_damaging(0.976) TCGA-VS-A94Y-01 10 88703219 88703219 G A MMRN2 Missense_Mutation p.T441M 0.16 deleterious(0) probably_damaging(0.972) TCGA-VS-A94Y-01 11 5068157 5068157 C T OR52J3 Silent p.Y134Y 0.40 TCGA-VS-A94Y-01 11 62457918 62457923 GCAGAA - BSCL2 In_Frame_Del p.S436_A437del 0.35 TCGA-VS-A94Y-01 11 65810615 65810615 T G GAL3ST3 Missense_Mutation p.D220A 0.43 deleterious(0.03) possibly_damaging(0.589) TCGA-VS-A94Y-01 12 103245487 103245487 C T PAH Missense_Mutation p.R297H 0.33 deleterious(0) possibly_damaging(0.57) TCGA-VS-A94Y-01 12 49431842 49431842 G A KMT2D Silent p.R3099R 0.40 TCGA-VS-A94Y-01 12 6840170 6840170 C T COPS7A Nonsense_Mutation p.R265* 0.29 TCGA-VS-A94Y-01 12 9354937 9354937 T C PZP Missense_Mutation p.N153S 0.18 tolerated(0.18) benign(0.057) TCGA-VS-A94Y-01 13 101936287 101936287 G T NALCN Silent p.L377L 0.66 TCGA-VS-A94Y-01 13 108882131 108882131 C A ABHD13 Missense_Mutation p.L189I 0.58 tolerated(0.3) possibly_damaging(0.679) TCGA-VS-A94Y-01 13 24515468 24515469 TT A ANKRD20A19P RNA 0.42 TCGA-VS-A94Y-01 13 52439838 52439838 G C CCDC70 Missense_Mutation p.W108C 0.53 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Y-01 14 50298078 50298078 G A NEMF Missense_Mutation p.A295V 0.23 deleterious(0.01) possibly_damaging(0.779) TCGA-VS-A94Y-01 15 34102681 34102681 C G RYR3 Missense_Mutation p.S3343C 0.22 possibly_damaging(0.598) TCGA-VS-A94Y-01 15 38645844 38645844 T A SPRED1 3'UTR 0.34 TCGA-VS-A94Y-01 15 82444090 82444090 A T EFTUD1 Missense_Mutation p.F902Y 0.25 tolerated(1) benign(0.065) TCGA-VS-A94Y-01 16 28334236 28334236 G T SBK1 3'UTR 0.26 TCGA-VS-A94Y-01 17 39280071 39280071 G A KRTAP4-12 Missense_Mutation p.R102C 0.33 deleterious(0.04) unknown(0) TCGA-VS-A94Y-01 17 40277745 40277745 T C RAB5C 3'UTR 0.28 TCGA-VS-A94Y-01 17 42332641 42332641 G A SLC4A1 Silent p.F608F 0.36 TCGA-VS-A94Y-01 17 45016210 45016210 C T GOSR2 Intron 0.33 TCGA-VS-A94Y-01 17 7641439 7641439 G A DNAH2 Intron 0.44 TCGA-VS-A94Y-01 18 21418777 21418777 C T LAMA3 Silent p.F1042F 0.12 TCGA-VS-A94Y-01 18 51013293 51013293 C T DCC Missense_Mutation p.S1288L 0.39 tolerated(0.39) benign(0.014) TCGA-VS-A94Y-01 18 7009322 7009322 G A LAMA1 Missense_Mutation p.T1306M 0.28 deleterious(0) probably_damaging(0.939) TCGA-VS-A94Y-01 19 3937285 3937285 C T NMRK2 Silent p.D55D 0.51 TCGA-VS-A94Y-01 19 4200138 4200138 G T ANKRD24 Missense_Mutation p.G105C 0.58 deleterious(0) probably_damaging(0.995) TCGA-VS-A94Y-01 19 50354206 50354206 C G PTOV1 5'Flank 0.18 TCGA-VS-A94Y-01 19 54705062 54705062 G T RPS9 Missense_Mutation p.A4S 0.34 tolerated(0.21) benign(0.004) TCGA-VS-A94Y-01 19 56733269 56733269 C G ZSCAN5A Missense_Mutation p.C389S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A94Y-01 1 150783961 150783961 C T ARNT 3'UTR 0.36 TCGA-VS-A94Y-01 1 151137682 151137682 C T LYSMD1 Missense_Mutation p.G18E 0.30 deleterious(0.02) unknown(0) TCGA-VS-A94Y-01 1 170928695 170928695 T A MROH9 Missense_Mutation p.V82E 0.11 deleterious(0) probably_damaging(0.939) TCGA-VS-A94Y-01 1 184764462 184764462 C G FAM129A Missense_Mutation p.E812D 0.07 tolerated_low_confidence(0.12) benign(0.01) TCGA-VS-A94Y-01 1 200377166 200377166 G A ZNF281 Silent p.N556N 0.42 TCGA-VS-A94Y-01 1 201166371 201166371 C T IGFN1 Missense_Mutation p.T98M 0.26 benign(0.21) TCGA-VS-A94Y-01 1 201846000 201846000 C G IPO9 3'UTR 0.34 TCGA-VS-A94Y-01 1 244219145 244219145 G A ZBTB18 3'UTR 0.17 TCGA-VS-A94Y-01 1 248757039 248757039 C T OR2T10 Missense_Mutation p.D11N 0.32 tolerated(0.1) benign(0.033) TCGA-VS-A94Y-01 1 249211111 249211111 C T PGBD2 Missense_Mutation p.R110C 0.22 tolerated(0.21) benign(0.004) TCGA-VS-A94Y-01 20 22564909 22564909 G A FOXA2 Missense_Mutation p.S3L 0.33 deleterious_low_confidence(0.01) benign(0.006) TCGA-VS-A94Y-01 21 42843895 42843895 G A TMPRSS2 Missense_Mutation p.P342S 0.28 deleterious(0.01) probably_damaging(0.923) TCGA-VS-A94Y-01 21 46950883 46950883 C T SLC19A1 Missense_Mutation p.A318T 0.22 deleterious(0.02) benign(0.176) TCGA-VS-A94Y-01 2 233414960 233414960 C T EIF4E2 5'UTR 0.62 TCGA-VS-A94Y-01 2 241700185 241700185 C T KIF1A Missense_Mutation p.A781T 0.50 tolerated(0.67) benign(0.013) TCGA-VS-A94Y-01 3 121659299 121659299 C T SLC15A2 Silent p.I659I 0.17 TCGA-VS-A94Y-01 3 13612956 13612956 C T FBLN2 Silent p.L367L 0.42 TCGA-VS-A94Y-01 3 47162018 47162018 G T SETD2 Missense_Mutation p.P1370T 0.75 tolerated(0.07) benign(0.312) TCGA-VS-A94Y-01 3 62518698 62518698 G A CADPS Silent p.D713D 0.54 TCGA-VS-A94Y-01 5 115336931 115336931 C G AQPEP Silent p.T605T 0.22 TCGA-VS-A94Y-01 5 137034069 137034069 C T KLHL3 Silent p.K90K 0.24 TCGA-VS-A94Y-01 5 169535474 169535474 C T FOXI1 Silent p.S332S 0.34 TCGA-VS-A94Y-01 5 72794607 72794607 C T BTF3 Nonsense_Mutation p.R39* 0.16 TCGA-VS-A94Y-01 6 166579323 166579323 C A T Missense_Mutation p.M159I 0.42 deleterious(0.01) possibly_damaging(0.598) TCGA-VS-A94Y-01 6 33657105 33657105 G A ITPR3 Missense_Mutation p.R2262H 0.11 tolerated(0.07) possibly_damaging(0.802) TCGA-VS-A94Y-01 6 86321334 86321334 T A SYNCRIP 3'Flank 0.44 TCGA-VS-A94Y-01 7 100656386 100656386 G A MUC12 Missense_Mutation p.G5201S 0.26 probably_damaging(0.934) TCGA-VS-A94Y-01 7 122111481 122111481 T C CADPS2 Missense_Mutation p.T712A 0.28 tolerated(0.11) possibly_damaging(0.766) TCGA-VS-A94Y-01 7 142326819 142326819 C T TRBV19 Silent p.T39T 0.26 TCGA-VS-A94Y-01 7 143748163 143748163 G A OR2A5 Silent p.A223A 0.45 TCGA-VS-A94Y-01 7 146536934 146536934 C T CNTNAP2 Missense_Mutation p.R114W 0.42 tolerated(0.11) probably_damaging(0.97) TCGA-VS-A94Y-01 7 77584977 77584977 G C PHTF2 3'UTR 0.23 TCGA-VS-A94Y-01 7 82450420 82450420 C T PCLO Intron 0.35 TCGA-VS-A94Y-01 7 86823096 86823096 G A DMTF1 Missense_Mutation p.R569K 0.40 tolerated(0.26) benign(0.008) TCGA-VS-A94Y-01 8 145639476 145639476 G T SLC39A4 Missense_Mutation p.L385M 0.44 deleterious(0) probably_damaging(0.996) TCGA-VS-A94Y-01 8 98817601 98817601 G T LAPTM4B Silent p.L131L 0.39 TCGA-VS-A94Y-01 9 140218225 140218225 C T EXD3 Silent p.K712K 0.35 TCGA-VS-A94Y-01 9 71629038 71629039 - GCGGCG PRKACG 5'UTR 0.35 TCGA-VS-A94Y-01 9 79322065 79322065 C A PRUNE2 Missense_Mutation p.V1709F 0.62 tolerated(0.07) benign(0.443) TCGA-VS-A94Y-01 9 84608501 84608501 C T SPATA31D1 Missense_Mutation p.S1039L 0.61 tolerated(0.31) benign(0) TCGA-VS-A94Z-01 10 101458541 101458541 T - ENTPD7 Frame_Shift_Del p.Y423Ifs*33 0.15 TCGA-VS-A94Z-01 10 102719243 102719243 G A FAM178A Missense_Mutation p.R1159Q 0.06 tolerated(0.17) benign(0.025) TCGA-VS-A94Z-01 10 102783223 102783223 C T PDZD7 Missense_Mutation p.G171D 0.14 deleterious(0.01) probably_damaging(0.912) TCGA-VS-A94Z-01 10 103585895 103585895 C T KCNIP2 3'Flank 0.29 TCGA-VS-A94Z-01 10 104154527 104154527 G A NFKB2 5'UTR 0.40 TCGA-VS-A94Z-01 10 104162702 104162702 C A PSD 3'UTR 0.21 TCGA-VS-A94Z-01 10 104572591 104572591 G A WBP1L Missense_Mutation p.D199N 0.18 deleterious(0.04) benign(0.006) TCGA-VS-A94Z-01 10 105205467 105205468 - T PDCD11 3'UTR 0.30 TCGA-VS-A94Z-01 10 112641197 112641197 G A PDCD4 Missense_Mutation p.A84T 0.15 tolerated(0.38) benign(0.001) TCGA-VS-A94Z-01 10 112658019 112658019 T - PDCD4 3'UTR 0.30 TCGA-VS-A94Z-01 10 11376036 11376036 T - CELF2 3'UTR 0.23 TCGA-VS-A94Z-01 10 118196275 118196275 G T PNLIPRP3 Missense_Mutation p.W34C 0.25 deleterious(0) probably_damaging(0.96) TCGA-VS-A94Z-01 10 118314781 118314781 G A PNLIP Silent p.T221T 0.24 TCGA-VS-A94Z-01 10 121338317 121338317 G A TIAL1 Silent p.G176G 0.15 TCGA-VS-A94Z-01 10 123237896 123237896 C G FGFR2 3'Flank 0.18 TCGA-VS-A94Z-01 10 12938708 12938708 G T CCDC3 3'UTR 0.14 TCGA-VS-A94Z-01 10 13370368 13370368 G A SEPHS1 Missense_Mutation p.A245V 0.12 deleterious(0.01) possibly_damaging(0.835) TCGA-VS-A94Z-01 10 134594361 134594361 C T INPP5A Silent p.S366S 0.14 TCGA-VS-A94Z-01 10 135038440 135038440 G - KNDC1 3'UTR 0.22 TCGA-VS-A94Z-01 10 135278390 135278390 C T SPRN Intron 0.15 TCGA-VS-A94Z-01 10 16562527 16562527 G A C1QL3 Missense_Mutation p.R180C 0.21 deleterious(0) probably_damaging(0.99) TCGA-VS-A94Z-01 10 17089414 17089414 T C CUBN Missense_Mutation p.R1110G 0.10 deleterious(0.03) probably_damaging(0.939) TCGA-VS-A94Z-01 10 2055502 2055504 GTT - LINC00700 RNA 0.19 TCGA-VS-A94Z-01 10 25314507 25314507 C T THNSL1 3'UTR 0.27 TCGA-VS-A94Z-01 10 26569992 26569992 C T GAD2 Silent p.C404C 0.10 TCGA-VS-A94Z-01 10 27462131 27462131 C T MASTL Nonsense_Mutation p.R737* 0.18 TCGA-VS-A94Z-01 10 37478449 37478450 - A ANKRD30A Frame_Shift_Ins p.E772Rfs*4 0.23 TCGA-VS-A94Z-01 10 38736788 38736788 C G LINC00999 3'UTR 0.17 TCGA-VS-A94Z-01 10 43691513 43691513 A - RASGEF1A 3'Flank 0.23 TCGA-VS-A94Z-01 10 48373562 48373562 C T ZNF488 3'UTR 0.10 TCGA-VS-A94Z-01 10 50190631 50190631 G A WDFY4 3'UTR 0.25 TCGA-VS-A94Z-01 10 51050101 51050101 G A PARG Silent p.D327D 0.16 TCGA-VS-A94Z-01 10 52751342 52751342 G A PRKG1 Silent p.P68P 0.23 TCGA-VS-A94Z-01 10 62551703 62551703 C G CDK1 Nonsense_Mutation p.S182* 0.22 TCGA-VS-A94Z-01 10 68857807 68857807 T - LRRTM3 3'UTR 0.27 TCGA-VS-A94Z-01 10 70333383 70333383 C T TET1 Missense_Mutation p.P430S 0.11 tolerated(0.24) benign(0.043) TCGA-VS-A94Z-01 10 71136734 71136734 G A HK1 Missense_Mutation p.R311Q 0.21 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 10 75552480 75552480 A G ZSWIM8 Missense_Mutation p.D728G 0.22 deleterious(0.01) probably_damaging(0.957) TCGA-VS-A94Z-01 10 7788626 7788627 - A ITIH2 Frame_Shift_Ins p.A885Sfs*44 0.21 TCGA-VS-A94Z-01 10 82369292 82369292 G A SH2D4B Missense_Mutation p.A324T 0.11 deleterious(0) probably_damaging(0.977) TCGA-VS-A94Z-01 10 88730394 88730394 C - ADIRF 3'UTR 0.11 TCGA-VS-A94Z-01 10 89725887 89725887 T - PTEN 3'UTR 0.17 TCGA-VS-A94Z-01 10 90530646 90530646 G T LIPN Silent p.T239T 0.10 TCGA-VS-A94Z-01 10 97976436 97976436 C T BLNK Missense_Mutation p.E194K 0.29 deleterious(0) benign(0.24) TCGA-VS-A94Z-01 10 98192669 98192669 C T TLL2 Missense_Mutation p.A139T 0.26 tolerated(0.53) benign(0.001) TCGA-VS-A94Z-01 10 98709052 98709052 G T LCOR Missense_Mutation p.D80Y 0.23 deleterious(0) probably_damaging(0.955) TCGA-VS-A94Z-01 10 99080979 99080979 C T FRAT1 3'UTR 0.18 TCGA-VS-A94Z-01 11 1018604 1018604 C T MUC6 Silent p.T1399T 0.15 TCGA-VS-A94Z-01 11 102738674 102738674 G C MMP12 RNA 0.24 TCGA-VS-A94Z-01 11 103058085 103058085 G A DYNC2H1 Missense_Mutation p.A2304T 0.12 benign(0.03) TCGA-VS-A94Z-01 11 103128374 103128374 G A DYNC2H1 Missense_Mutation p.S3507N 0.24 probably_damaging(0.997) TCGA-VS-A94Z-01 11 10328664 10328664 T - ADM 3'UTR 0.12 TCGA-VS-A94Z-01 11 10523050 10523050 G A AMPD3 Silent p.P594P 0.30 TCGA-VS-A94Z-01 11 105795329 105795329 G A GRIA4 Missense_Mutation p.V561I 0.18 deleterious(0) probably_damaging(0.958) TCGA-VS-A94Z-01 11 10796802 10796802 C - CTR9 Frame_Shift_Del p.K980Nfs*25 0.12 TCGA-VS-A94Z-01 11 110007737 110007737 C A ZC3H12C Missense_Mutation p.P124H 0.25 deleterious(0) probably_damaging(0.935) TCGA-VS-A94Z-01 11 11354289 11354289 G A GALNT18 Silent p.S456S 0.22 TCGA-VS-A94Z-01 11 114577614 114577614 C T NXPE2 Nonsense_Mutation p.Q548* 0.33 TCGA-VS-A94Z-01 11 118452034 118452034 G A ARCN1 Missense_Mutation p.R26Q 0.31 deleterious(0.01) probably_damaging(0.974) TCGA-VS-A94Z-01 11 119044377 119044377 G T NLRX1 Missense_Mutation p.G140V 0.32 tolerated(0.16) benign(0.046) TCGA-VS-A94Z-01 11 119180561 119180561 G A MCAM 3'UTR 0.48 TCGA-VS-A94Z-01 11 12277194 12277194 C T MICAL2 Missense_Mutation p.T951M 0.30 deleterious(0.05) possibly_damaging(0.81) TCGA-VS-A94Z-01 11 123909401 123909401 A - OR10G7 Frame_Shift_Del p.F103Sfs*32 0.28 TCGA-VS-A94Z-01 11 125315889 125315889 G A FEZ1 3'UTR 0.32 TCGA-VS-A94Z-01 11 1263698 1263698 C - MUC5B Frame_Shift_Del p.T1863Kfs*68 0.15 TCGA-VS-A94Z-01 11 128564103 128564103 A G FLI1 5'UTR 0.07 TCGA-VS-A94Z-01 11 130079427 130079427 G A ST14 Missense_Mutation p.R787H 0.32 deleterious(0.03) possibly_damaging(0.652) TCGA-VS-A94Z-01 11 17515868 17515868 C T USH1C 3'Flank 0.10 TCGA-VS-A94Z-01 11 17793223 17793223 C G KCNC1 Missense_Mutation p.F194L 0.21 tolerated(0.17) benign(0.036) TCGA-VS-A94Z-01 11 17799078 17799078 G A KCNC1 Intron 0.12 TCGA-VS-A94Z-01 11 18503204 18503204 G A TSG101 Silent p.G352G 0.10 TCGA-VS-A94Z-01 11 1902786 1902786 C - LSP1 Frame_Shift_Del p.Q236Sfs*31 0.15 TCGA-VS-A94Z-01 11 26681892 26681892 G C ANO3 Missense_Mutation p.E949D 0.15 deleterious(0) probably_damaging(0.998) TCGA-VS-A94Z-01 11 2997342 2997342 C A NAP1L4 Missense_Mutation p.D29Y 0.26 deleterious(0.03) probably_damaging(0.976) TCGA-VS-A94Z-01 11 34501665 34501665 A - ELF5 3'UTR 0.31 TCGA-VS-A94Z-01 11 35278004 35278004 C T SLC1A2 3'UTR 0.21 TCGA-VS-A94Z-01 11 44286441 44286441 G A ALX4 Missense_Mutation p.A400V 0.16 deleterious(0) probably_damaging(0.992) TCGA-VS-A94Z-01 11 45671465 45671465 G T CHST1 Silent p.R337R 0.11 TCGA-VS-A94Z-01 11 47463173 47463173 G T RAPSN Missense_Mutation p.A301E 0.16 tolerated(1) benign(0.001) TCGA-VS-A94Z-01 11 47640186 47640186 A T MTCH2 3'UTR 0.20 TCGA-VS-A94Z-01 11 49204787 49204787 A C FOLH1 Silent p.A278A 0.07 TCGA-VS-A94Z-01 11 57948327 57948327 T - OR9Q1 3'UTR 0.25 TCGA-VS-A94Z-01 11 62521497 62521497 G A ZBTB3 Missense_Mutation p.S13L 0.23 tolerated_low_confidence(0.06) benign(0.003) TCGA-VS-A94Z-01 11 62559254 62559255 - G TMEM223 Frame_Shift_Ins p.V72Gfs*91 0.13 TCGA-VS-A94Z-01 11 6261645 6261645 G T CNGA4 Silent p.A207A 0.23 TCGA-VS-A94Z-01 11 6261723 6261723 C T CNGA4 Silent p.G233G 0.18 TCGA-VS-A94Z-01 11 6414866 6414866 T C SMPD1 Missense_Mutation p.I428T 0.10 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 11 64510904 64510904 C T RASGRP2 Intron 0.29 TCGA-VS-A94Z-01 11 64536523 64536523 G A SF1 Silent p.G411G 0.25 TCGA-VS-A94Z-01 11 64676797 64676797 C T ATG2A Missense_Mutation p.R717H 0.17 tolerated(0.23) benign(0.072) TCGA-VS-A94Z-01 11 65545839 65545839 C T AP5B1 Missense_Mutation p.A709T 0.11 tolerated(0.13) benign(0.444) TCGA-VS-A94Z-01 11 65714397 65714397 A G TSGA10IP RNA 0.22 TCGA-VS-A94Z-01 11 65784622 65784622 T C CATSPER1 Missense_Mutation p.Y742C 0.12 deleterious(0) probably_damaging(0.948) TCGA-VS-A94Z-01 11 67165415 67165415 C G RAD9A 3'UTR 0.17 TCGA-VS-A94Z-01 11 67261175 67261175 C T PITPNM1 Missense_Mutation p.A1048T 0.13 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 11 70052356 70052356 G A FADD Missense_Mutation p.R135H 0.19 tolerated(0.44) probably_damaging(0.999) TCGA-VS-A94Z-01 11 76371904 76371904 G A LRRC32 Missense_Mutation p.L245F 0.52 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 11 77924716 77924716 A G USP35 Missense_Mutation p.R972G 0.12 deleterious(0) probably_damaging(0.997) TCGA-VS-A94Z-01 12 100751173 100751173 C T SLC17A8 Missense_Mutation p.P2S 0.11 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-VS-A94Z-01 12 104156113 104156113 C A STAB2 Missense_Mutation p.A2474D 0.25 deleterious(0.03) possibly_damaging(0.47) TCGA-VS-A94Z-01 12 104335305 104335305 A - HSP90B1 Frame_Shift_Del p.K405Rfs*21 0.11 TCGA-VS-A94Z-01 12 108082460 108082460 G A PWP1 Missense_Mutation p.R67H 0.13 tolerated(0.14) benign(0.092) TCGA-VS-A94Z-01 12 110488966 110488966 C G C12orf76 Intron 0.18 TCGA-VS-A94Z-01 12 11139200 11139200 G A TAS2R50 Missense_Mutation p.A87V 0.31 tolerated(0.53) benign(0.034) TCGA-VS-A94Z-01 12 111953993 111953993 G T ATXN2 Missense_Mutation p.P607H 0.12 probably_damaging(0.999) TCGA-VS-A94Z-01 12 112947530 112947530 A - PTPN11 3'UTR 0.20 TCGA-VS-A94Z-01 12 120125244 120125244 G - CIT 3'UTR 0.18 TCGA-VS-A94Z-01 12 120984266 120984266 C G RNF10 Silent p.P72P 0.25 TCGA-VS-A94Z-01 12 121136667 121136667 C T MLEC 3'UTR 0.20 TCGA-VS-A94Z-01 12 122723244 122723244 C T VPS33A Missense_Mutation p.A398T 0.12 tolerated(0.07) benign(0.029) TCGA-VS-A94Z-01 12 122958211 122958211 C G ZCCHC8 Missense_Mutation p.A653P 0.25 tolerated(0.12) benign(0.018) TCGA-VS-A94Z-01 12 123968748 123968748 G A RILPL1 Missense_Mutation p.P349L 0.21 deleterious(0.01) probably_damaging(0.91) TCGA-VS-A94Z-01 12 124414989 124414989 G A DNAH10 Missense_Mutation p.R4100H 0.22 probably_damaging(1) TCGA-VS-A94Z-01 12 124848313 124848313 G A NCOR2 Missense_Mutation p.P947L 0.17 benign(0.406) TCGA-VS-A94Z-01 12 125432577 125432577 C A DHX37 Intron 0.10 TCGA-VS-A94Z-01 12 125612781 125612781 C T AACS Missense_Mutation p.R462W 0.14 deleterious(0) probably_damaging(0.991) TCGA-VS-A94Z-01 12 130387862 130387862 G A TMEM132D Missense_Mutation p.T8M 0.20 tolerated(0.06) benign(0.055) TCGA-VS-A94Z-01 12 132325307 132325307 C T MMP17 Silent p.G204G 0.22 TCGA-VS-A94Z-01 12 132445398 132445398 C T EP400 Silent p.S78S 0.23 TCGA-VS-A94Z-01 12 133272579 133272579 G A PXMP2 Missense_Mutation p.V116I 0.23 tolerated(1) benign(0.005) TCGA-VS-A94Z-01 12 14927701 14927701 C T H2AFJ Silent p.G99G 0.17 TCGA-VS-A94Z-01 12 2017138 2017138 G A CACNA2D4 Silent p.G184G 0.10 TCGA-VS-A94Z-01 12 23908595 23908595 G A SOX5 Missense_Mutation p.S182L 0.23 deleterious(0.03) possibly_damaging(0.674) TCGA-VS-A94Z-01 12 25348061 25348061 G A CASC1 5'UTR 0.30 TCGA-VS-A94Z-01 12 27234339 27234339 G A C12orf71 Missense_Mutation p.S193L 0.19 tolerated(0.34) benign(0.051) TCGA-VS-A94Z-01 12 2968215 2968215 C T FOXM1 Silent p.T665T 0.28 TCGA-VS-A94Z-01 12 29813765 29813765 A - TMTC1 Intron 0.28 TCGA-VS-A94Z-01 12 31545242 31545242 G A DENND5B Missense_Mutation p.A1142V 0.15 tolerated(0.08) possibly_damaging(0.593) TCGA-VS-A94Z-01 12 44782802 44782802 G A TMEM117 3'UTR 0.16 TCGA-VS-A94Z-01 12 4634441 4634441 T - C12orf4 Frame_Shift_Del p.N236Tfs*22 0.17 TCGA-VS-A94Z-01 12 48391474 48391474 C T COL2A1 Missense_Mutation p.R149H 0.33 unknown(0) TCGA-VS-A94Z-01 12 4854615 4854615 G A GALNT8 Missense_Mutation p.R294Q 0.35 tolerated(0.13) probably_damaging(0.986) TCGA-VS-A94Z-01 12 49430959 49430959 G A KMT2D Nonsense_Mutation p.Q3394* 0.13 TCGA-VS-A94Z-01 12 49691196 49691196 G - PRPH Frame_Shift_Del p.G353Afs*16 0.17 TCGA-VS-A94Z-01 12 50870259 50870259 T - LARP4 3'UTR 0.17 TCGA-VS-A94Z-01 12 52881696 52881696 A G KRT6A Silent p.S501S 0.15 TCGA-VS-A94Z-01 12 52914107 52914107 G C KRT5 5'UTR 0.17 TCGA-VS-A94Z-01 12 53584160 53584160 G C ZNF740 3'UTR 0.21 TCGA-VS-A94Z-01 12 53880851 53880851 C T MAP3K12 Missense_Mutation p.E109K 0.21 tolerated(0.11) benign(0.23) TCGA-VS-A94Z-01 12 54424434 54424434 A - HOXC6 3'UTR 0.23 TCGA-VS-A94Z-01 12 56431860 56431860 A G IKZF4 3'UTR 0.19 TCGA-VS-A94Z-01 12 56536116 56536116 C G ESYT1 Silent p.L890L 0.47 TCGA-VS-A94Z-01 12 56563342 56563342 C T SMARCC2 Missense_Mutation p.A865T 0.10 deleterious(0) possibly_damaging(0.499) TCGA-VS-A94Z-01 12 57005847 57005847 G A BAZ2A Missense_Mutation p.S442F 0.21 tolerated(0.1) possibly_damaging(0.529) TCGA-VS-A94Z-01 12 57106690 57106690 G A NACA Silent p.V881V 0.10 TCGA-VS-A94Z-01 12 57113254 57113254 T - NACA Intron 0.13 TCGA-VS-A94Z-01 12 64895768 64895768 C G TBK1 3'UTR 0.14 TCGA-VS-A94Z-01 12 64895815 64895815 C G TBK1 3'UTR 0.12 TCGA-VS-A94Z-01 12 65672591 65672591 C A MSRB3 Missense_Mutation p.L15I 0.07 tolerated_low_confidence(0.37) possibly_damaging(0.636) TCGA-VS-A94Z-01 12 66725341 66725341 T C HELB Silent p.D1026D 0.14 TCGA-VS-A94Z-01 12 7060853 7060853 G T PTPN6 Silent p.R30R 0.18 TCGA-VS-A94Z-01 12 7065673 7065673 C T PTPN6 Missense_Mutation p.A339V 0.26 tolerated(1) benign(0.001) TCGA-VS-A94Z-01 12 70723332 70723332 C T CNOT2 Missense_Mutation p.T123M 0.18 tolerated_low_confidence(0.15) possibly_damaging(0.451) TCGA-VS-A94Z-01 12 76796481 76796481 T - OSBPL8 Frame_Shift_Del p.E119Nfs*37 0.18 TCGA-VS-A94Z-01 12 77438429 77438429 T C E2F7 Missense_Mutation p.S326G 0.21 deleterious(0) probably_damaging(0.972) TCGA-VS-A94Z-01 12 8391279 8391280 GA - RP11-266K4.9 Intron 0.26 TCGA-VS-A94Z-01 12 85285856 85285856 T C SLC6A15 Missense_Mutation p.D15G 0.06 deleterious(0.05) benign(0.123) TCGA-VS-A94Z-01 12 88910194 88910194 C G KITLG Missense_Mutation p.R146T 0.22 tolerated(0.2) benign(0.42) TCGA-VS-A94Z-01 12 98987962 98987962 G A SLC25A3 Intron 0.14 TCGA-VS-A94Z-01 13 102375254 102375254 G A FGF14 Missense_Mutation p.T229M 0.25 tolerated(0.07) possibly_damaging(0.888) TCGA-VS-A94Z-01 13 103385068 103385068 C T CCDC168 Silent p.L1364L 0.14 TCGA-VS-A94Z-01 13 108886064 108886064 C T ABHD13 3'UTR 0.13 TCGA-VS-A94Z-01 13 110434888 110434888 G A IRS2 Silent p.R1171R 0.52 TCGA-VS-A94Z-01 13 111090994 111090994 C T COL4A2 Silent p.I297I 0.17 TCGA-VS-A94Z-01 13 113333644 113333644 C T C13orf35 5'UTR 0.20 TCGA-VS-A94Z-01 13 113512189 113512189 G T ATP11A Missense_Mutation p.G826C 0.12 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 13 113899301 113899301 G A CUL4A Missense_Mutation p.A458T 0.32 deleterious(0) probably_damaging(0.952) TCGA-VS-A94Z-01 13 114288239 114288239 A G TFDP1 Missense_Mutation p.Y170C 0.22 deleterious(0) possibly_damaging(0.491) TCGA-VS-A94Z-01 13 114295225 114295225 C T TFDP1 3'UTR 0.36 TCGA-VS-A94Z-01 13 114751136 114751136 C T RASA3 Silent p.E793E 0.06 TCGA-VS-A94Z-01 13 21553861 21553861 A - LATS2 Frame_Shift_Del p.L914Wfs*10 0.27 TCGA-VS-A94Z-01 13 25073457 25073457 T A PARP4 Missense_Mutation p.K153N 0.17 deleterious(0) probably_damaging(0.982) TCGA-VS-A94Z-01 13 25073458 25073458 T A PARP4 Missense_Mutation p.K153I 0.17 deleterious(0) probably_damaging(0.948) TCGA-VS-A94Z-01 13 28868547 28868548 - A PAN3 3'Flank 0.20 TCGA-VS-A94Z-01 13 28883040 28883040 C G FLT1 Missense_Mutation p.M1220I 0.22 tolerated(0.39) benign(0.001) TCGA-VS-A94Z-01 13 30098278 30098278 C T SLC7A1 Missense_Mutation p.A273T 0.09 deleterious(0.01) probably_damaging(1) TCGA-VS-A94Z-01 13 30521824 30521824 C T LINC00544 RNA 0.13 TCGA-VS-A94Z-01 13 33018215 33018215 C A N4BP2L2 Missense_Mutation p.Q153H 0.12 deleterious(0) probably_damaging(0.977) TCGA-VS-A94Z-01 13 35770411 35770411 C G NBEA Missense_Mutation p.L1780V 0.24 tolerated_low_confidence(0.4) benign(0.103) TCGA-VS-A94Z-01 13 36348523 36348523 G A DCLK1 3'UTR 0.35 TCGA-VS-A94Z-01 13 37678703 37678704 - T CSNK1A1L Frame_Shift_Ins p.Q231Tfs*4 0.15 TCGA-VS-A94Z-01 13 39587699 39587699 C T PROSER1 Missense_Mutation p.A564T 0.12 tolerated_low_confidence(0.43) benign(0.036) TCGA-VS-A94Z-01 13 40924365 40924365 A G RP11-172E9.2 RNA 0.16 TCGA-VS-A94Z-01 13 46137867 46137867 C T FAM194B Missense_Mutation p.R415H 0.14 deleterious(0) possibly_damaging(0.852) TCGA-VS-A94Z-01 13 49795007 49795007 C T MLNR Silent p.G178G 0.33 TCGA-VS-A94Z-01 13 49882930 49882930 C G CAB39L 3'UTR 0.17 TCGA-VS-A94Z-01 13 50102755 50102755 G C PHF11 Missense_Mutation p.R317T 0.11 tolerated(0.25) benign(0.056) TCGA-VS-A94Z-01 13 52764010 52764010 G A MRPS31P5 RNA 0.38 TCGA-VS-A94Z-01 13 53001141 53001141 C G VPS36 Missense_Mutation p.D208H 0.21 deleterious(0.01) possibly_damaging(0.616) TCGA-VS-A94Z-01 13 53035249 53035249 G A CKAP2 Silent p.G97G 0.14 TCGA-VS-A94Z-01 13 58207874 58207874 C T PCDH17 Silent p.G398G 0.12 TCGA-VS-A94Z-01 13 74267968 74267968 C A KLF12 3'UTR 0.18 TCGA-VS-A94Z-01 13 95121037 95121037 C T DCT Silent p.V186V 0.30 TCGA-VS-A94Z-01 14 100173999 100173999 G A CYP46A1 Missense_Mutation p.R226H 0.15 deleterious(0) probably_damaging(0.996) TCGA-VS-A94Z-01 14 100331909 100331909 A G EML1 Silent p.L103L 0.11 TCGA-VS-A94Z-01 14 100800534 100800534 C T WARS 3'UTR 0.23 TCGA-VS-A94Z-01 14 101491360 101491360 G A MIR380 RNA 0.26 TCGA-VS-A94Z-01 14 101492099 101492099 C T MIR323A RNA 0.18 TCGA-VS-A94Z-01 14 102550211 102550211 T - HSP90AA1 Frame_Shift_Del p.K541Nfs*3 0.17 TCGA-VS-A94Z-01 14 103808513 103808513 G A EIF5 3'UTR 0.35 TCGA-VS-A94Z-01 14 104026194 104026194 G C BAG5 Missense_Mutation p.S477R 0.22 tolerated(0.07) possibly_damaging(0.667) TCGA-VS-A94Z-01 14 20711831 20711831 T - OR11H4 Frame_Shift_Del p.F295Lfs*4 0.15 TCGA-VS-A94Z-01 14 23624407 23624407 G T SLC7A8 Intron 0.10 TCGA-VS-A94Z-01 14 24785258 24785258 C T LTB4R Missense_Mutation p.A134V 0.13 tolerated(1) benign(0.01) TCGA-VS-A94Z-01 14 24839017 24839017 G T NFATC4 Missense_Mutation p.W201L 0.25 tolerated(0.16) possibly_damaging(0.801) TCGA-VS-A94Z-01 14 30045910 30045910 G A PRKD1 3'UTR 0.12 TCGA-VS-A94Z-01 14 32562545 32562545 T - ARHGAP5 Frame_Shift_Del p.F892Lfs*9 0.18 TCGA-VS-A94Z-01 14 34903678 34903678 C A SPTSSA 3'UTR 0.09 TCGA-VS-A94Z-01 14 39784896 39784896 C A CTAGE5 Missense_Mutation p.H461N 0.17 deleterious(0.03) benign(0.135) TCGA-VS-A94Z-01 14 45397900 45397900 A T KLHL28 3'UTR 0.14 TCGA-VS-A94Z-01 14 57072317 57072317 C T TMEM260 Silent p.G184G 0.27 TCGA-VS-A94Z-01 14 58839149 58839149 T - ARID4A 3'UTR 0.18 TCGA-VS-A94Z-01 14 66974645 66974645 C G GPHN 5'UTR 0.21 TCGA-VS-A94Z-01 14 66974785 66974785 C G GPHN 5'UTR 0.15 TCGA-VS-A94Z-01 14 66975178 66975178 C G GPHN 5'UTR 0.24 TCGA-VS-A94Z-01 14 71577955 71577955 C T PCNX 3'UTR 0.19 TCGA-VS-A94Z-01 14 73409718 73409718 C T DCAF4 Missense_Mutation p.R150C 0.08 deleterious(0) possibly_damaging(0.841) TCGA-VS-A94Z-01 14 73706509 73706509 C T PAPLN Missense_Mutation p.P8L 0.46 tolerated(0.68) possibly_damaging(0.859) TCGA-VS-A94Z-01 14 74182697 74182697 C T ELMSAN1 3'UTR 0.38 TCGA-VS-A94Z-01 14 74551166 74551166 C T ALDH6A1 5'UTR 0.20 TCGA-VS-A94Z-01 14 77794336 77794336 C T GSTZ1 Missense_Mutation p.R100C 0.17 deleterious(0) probably_damaging(0.992) TCGA-VS-A94Z-01 14 86088264 86088264 G C FLRT2 Missense_Mutation p.E136Q 0.17 deleterious(0.01) probably_damaging(0.948) TCGA-VS-A94Z-01 14 86089670 86089670 A C FLRT2 Missense_Mutation p.E604D 0.47 tolerated(0.16) possibly_damaging(0.857) TCGA-VS-A94Z-01 14 89878336 89878336 A G FOXN3 Missense_Mutation p.V162A 0.14 deleterious(0) probably_damaging(0.996) TCGA-VS-A94Z-01 14 91948485 91948485 G A SMEK1 Missense_Mutation p.S117F 0.24 deleterious(0) probably_damaging(0.989) TCGA-VS-A94Z-01 14 93118854 93118854 C T RIN3 Missense_Mutation p.A487V 0.12 tolerated(0.23) benign(0.299) TCGA-VS-A94Z-01 15 100801760 100801760 G A ADAMTS17 Nonsense_Mutation p.R319* 0.15 TCGA-VS-A94Z-01 15 102304762 102304762 C T DNM1P47 RNA 0.17 TCGA-VS-A94Z-01 15 25417786 25417786 C T SNORD115-2 RNA 0.11 TCGA-VS-A94Z-01 15 32917690 32917690 C T ARHGAP11A Missense_Mutation p.R240C 0.14 tolerated(0.17) benign(0.001) TCGA-VS-A94Z-01 15 41812627 41812627 C T RPAP1 Missense_Mutation p.V1253M 0.15 tolerated(0.07) benign(0.179) TCGA-VS-A94Z-01 15 42032333 42032333 C A MGA Missense_Mutation p.S1506Y 0.15 deleterious(0) probably_damaging(0.984) TCGA-VS-A94Z-01 15 42448678 42448678 G C PLA2G4F Missense_Mutation p.Q24E 0.49 tolerated(0.13) benign(0.031) TCGA-VS-A94Z-01 15 44053632 44053632 C T PDIA3 Silent p.V125V 0.38 TCGA-VS-A94Z-01 15 45411311 45411311 G A DUOXA1 Intron 0.16 TCGA-VS-A94Z-01 15 48779549 48779549 C T FBN1 Silent p.P1141P 0.11 TCGA-VS-A94Z-01 15 48812856 48812856 C T FBN1 Missense_Mutation p.E383K 0.07 possibly_damaging(0.508) TCGA-VS-A94Z-01 15 50769177 50769177 G A USP8 Silent p.E327E 0.20 TCGA-VS-A94Z-01 15 51503190 51503190 C T CYP19A1 Missense_Mutation p.A443T 0.21 deleterious(0.01) possibly_damaging(0.543) TCGA-VS-A94Z-01 15 52652265 52652265 G T MYO5A Missense_Mutation p.P1108H 0.09 deleterious(0) possibly_damaging(0.541) TCGA-VS-A94Z-01 15 53081602 53081602 G A ONECUT1 Silent p.S160S 0.27 TCGA-VS-A94Z-01 15 59499076 59499076 C T LDHAL6B 5'UTR 0.13 TCGA-VS-A94Z-01 15 63125513 63125513 G C TLN2 Intron 0.33 TCGA-VS-A94Z-01 15 64972433 64972433 C A ZNF609 Silent p.V1273V 0.38 TCGA-VS-A94Z-01 15 65496683 65496684 TT - CILP Frame_Shift_Del p.K281Vfs*12 0.11 TCGA-VS-A94Z-01 15 66782870 66782870 G C MAP2K1 Missense_Mutation p.E367Q 0.17 tolerated(0.07) benign(0.025) TCGA-VS-A94Z-01 15 68040568 68040568 G C MAP2K5 Splice_Site p.X359_splice 0.12 TCGA-VS-A94Z-01 15 69072155 69072155 G A ANP32A 3'UTR 0.07 TCGA-VS-A94Z-01 15 73043726 73043726 T - ADPGK 3'UTR 0.08 TCGA-VS-A94Z-01 15 74702961 74702961 G A SEMA7A 3'UTR 0.09 TCGA-VS-A94Z-01 15 75043542 75043542 G A CYP1A2 Missense_Mutation p.D282N 0.12 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 15 81241346 81241346 C - KIAA1199 3'UTR 0.14 TCGA-VS-A94Z-01 15 83350228 83350228 C T AP3B2 Silent p.S155S 0.21 TCGA-VS-A94Z-01 15 85747543 85747543 C T AC044860.1 3'Flank 0.24 TCGA-VS-A94Z-01 15 89719194 89719194 C T ABHD2 Silent p.C230C 0.19 TCGA-VS-A94Z-01 15 89838190 89838190 C T FANCI Missense_Mutation p.S834F 0.17 deleterious(0) possibly_damaging(0.789) TCGA-VS-A94Z-01 15 90455753 90455753 G A C15orf38 Intron 0.17 TCGA-VS-A94Z-01 15 93567736 93567736 G A CHD2 Missense_Mutation p.R1763H 0.17 deleterious_low_confidence(0) possibly_damaging(0.517) TCGA-VS-A94Z-01 16 1272081 1272082 - C TPSG1 Frame_Shift_Ins p.P225Afs*20 0.26 TCGA-VS-A94Z-01 16 14970635 14970635 C T NOMO1 Silent p.G877G 0.07 TCGA-VS-A94Z-01 16 1840735 1840735 C T IGFALS Missense_Mutation p.V600I 0.27 deleterious(0.04) benign(0.124) TCGA-VS-A94Z-01 16 20329597 20329597 G A GP2 Missense_Mutation p.T391I 0.08 tolerated(0.08) benign(0.405) TCGA-VS-A94Z-01 16 2069698 2069698 C - NPW 5'UTR 0.21 TCGA-VS-A94Z-01 16 2134391 2134391 G T TSC2 Nonsense_Mutation p.E1390* 0.16 TCGA-VS-A94Z-01 16 22163834 22163834 C T VWA3A Missense_Mutation p.A1095V 0.26 tolerated(0.2) benign(0.026) TCGA-VS-A94Z-01 16 239115 239115 G C LUC7L 3'UTR 0.19 TCGA-VS-A94Z-01 16 2732597 2732597 C T KCTD5 Silent p.I16I 0.30 TCGA-VS-A94Z-01 16 27483122 27483122 G A GTF3C1 Silent p.N1491N 0.31 TCGA-VS-A94Z-01 16 28123191 28123191 C T XPO6 Missense_Mutation p.R763H 0.11 tolerated(0.12) benign(0.003) TCGA-VS-A94Z-01 16 28603404 28603404 G A SULT1A2 Missense_Mutation p.A278V 0.18 tolerated(0.14) benign(0.005) TCGA-VS-A94Z-01 16 30371089 30371089 C T TBC1D10B Missense_Mutation p.A449T 0.21 deleterious(0) possibly_damaging(0.809) TCGA-VS-A94Z-01 16 30745870 30745870 C T SRCAP Silent p.S2221S 0.08 TCGA-VS-A94Z-01 16 31476059 31476059 G A ARMC5 Missense_Mutation p.R572H 0.14 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 16 3714335 3714335 G - TRAP1 Frame_Shift_Del p.N504Tfs*14 0.14 TCGA-VS-A94Z-01 16 3721735 3721735 C T TRAP1 Missense_Mutation p.S408N 0.10 tolerated(0.23) probably_damaging(0.951) TCGA-VS-A94Z-01 16 3777559 3777559 A - CREBBP 3'UTR 0.13 TCGA-VS-A94Z-01 16 4242724 4242724 C T SRL Silent p.E284E 0.17 TCGA-VS-A94Z-01 16 4431113 4431113 C T VASN Nonsense_Mutation p.Q79* 0.11 TCGA-VS-A94Z-01 16 46615112 46615112 C T SHCBP1 3'UTR 0.20 TCGA-VS-A94Z-01 16 46731386 46731386 G T ORC6 Missense_Mutation p.E216D 0.21 tolerated(0.59) benign(0.001) TCGA-VS-A94Z-01 16 4812306 4812306 G A ZNF500 Missense_Mutation p.A210V 0.10 tolerated(0.21) benign(0.183) TCGA-VS-A94Z-01 16 4930213 4930213 G A UBN1 3'UTR 0.12 TCGA-VS-A94Z-01 16 4933367 4933367 G C PPL 3'UTR 0.31 TCGA-VS-A94Z-01 16 4933721 4933721 G C PPL Silent p.V1645V 0.33 TCGA-VS-A94Z-01 16 50259159 50259159 C T PAPD5 Missense_Mutation p.S573L 0.13 deleterious(0) probably_damaging(0.941) TCGA-VS-A94Z-01 16 50707477 50707477 C T SNX20 Missense_Mutation p.R264H 0.18 tolerated(0.1) probably_damaging(0.912) TCGA-VS-A94Z-01 16 50733462 50733462 T C NOD2 Missense_Mutation p.V46A 0.12 tolerated(0.32) benign(0.034) TCGA-VS-A94Z-01 16 53272441 53272441 G A CHD9 Silent p.G940G 0.26 TCGA-VS-A94Z-01 16 57186672 57186672 G C FAM192A 3'UTR 0.29 TCGA-VS-A94Z-01 16 57417485 57417487 GTG - CX3CL1 3'UTR 0.23 TCGA-VS-A94Z-01 16 57504226 57504227 GA - POLR2C Frame_Shift_Del p.E215Vfs*6 0.27 TCGA-VS-A94Z-01 16 57752321 57752321 G C CCDC135 Missense_Mutation p.K380N 0.26 tolerated(0.06) probably_damaging(0.913) TCGA-VS-A94Z-01 16 58585573 58585573 T C CNOT1 Missense_Mutation p.T1041A 0.24 tolerated(0.33) benign(0.01) TCGA-VS-A94Z-01 16 67432147 67432147 C G ZDHHC1 Missense_Mutation p.E299Q 0.27 deleterious(0.01) benign(0.08) TCGA-VS-A94Z-01 16 68056046 68056046 T C DDX28 Missense_Mutation p.T354A 0.29 tolerated(0.08) benign(0.418) TCGA-VS-A94Z-01 16 68391040 68391040 C T PRMT7 Silent p.G664G 0.12 TCGA-VS-A94Z-01 16 70696564 70696564 G - FLJ00418 5'UTR 0.23 TCGA-VS-A94Z-01 16 70866918 70866918 C G HYDIN Missense_Mutation p.E4578Q 0.24 possibly_damaging(0.859) TCGA-VS-A94Z-01 16 71765329 71765329 A - AP1G1 3'Flank 0.12 TCGA-VS-A94Z-01 16 72130255 72130255 G A DHX38 Missense_Mutation p.D67N 0.16 tolerated(0.3) benign(0.004) TCGA-VS-A94Z-01 16 79630784 79630784 T - MAF Intron 0.20 TCGA-VS-A94Z-01 16 81066286 81066286 A G CENPN Missense_Mutation p.Y350C 0.14 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-VS-A94Z-01 16 845133 845133 G A CHTF18 Missense_Mutation p.G651D 0.12 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 16 87451093 87451093 G A ZCCHC14 Silent p.P315P 0.10 TCGA-VS-A94Z-01 16 87744992 87744992 C T KLHDC4 Missense_Mutation p.G298D 0.14 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 16 88778562 88778562 C A CTU2 Intron 0.26 TCGA-VS-A94Z-01 16 88779841 88779841 C A CTU2 Missense_Mutation p.L287M 0.15 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 16 88792973 88792973 C T PIEZO1 Missense_Mutation p.V1260I 0.12 tolerated(0.58) probably_damaging(0.994) TCGA-VS-A94Z-01 16 89980662 89980663 TG - MC1R 5'Flank 0.28 TCGA-VS-A94Z-01 16 9943658 9943658 G A GRIN2A Missense_Mutation p.T428M 0.18 deleterious(0) possibly_damaging(0.692) TCGA-VS-A94Z-01 17 11513717 11513717 G A DNAH9 Missense_Mutation p.D207N 0.21 benign(0.001) TCGA-VS-A94Z-01 17 11608382 11608382 G A DNAH9 Missense_Mutation p.R1811H 0.21 possibly_damaging(0.755) TCGA-VS-A94Z-01 17 15989629 15989629 T - NCOR1 Frame_Shift_Del p.K1048Nfs*5 0.18 TCGA-VS-A94Z-01 17 18045031 18045031 C A MYO15A Missense_Mutation p.L1866M 0.40 unknown(0) TCGA-VS-A94Z-01 17 21438521 21438521 C A C17orf51 3'UTR 0.18 TCGA-VS-A94Z-01 17 21731641 21731641 C T UBBP4 3'UTR 0.20 TCGA-VS-A94Z-01 17 2276681 2276681 C T SGSM2 Silent p.C658C 0.24 TCGA-VS-A94Z-01 17 26086015 26086015 G A NOS2 Silent p.C1082C 0.14 TCGA-VS-A94Z-01 17 27061167 27061167 G A NEK8 Missense_Mutation p.E72K 0.12 deleterious(0) possibly_damaging(0.824) TCGA-VS-A94Z-01 17 27225574 27225575 - G DHRS13 Frame_Shift_Ins p.H340Pfs*3 0.15 TCGA-VS-A94Z-01 17 28320294 28320294 C T EFCAB5 Silent p.F293F 0.26 TCGA-VS-A94Z-01 17 28419089 28419089 C T EFCAB5 Missense_Mutation p.R1380C 0.07 deleterious(0) possibly_damaging(0.502) TCGA-VS-A94Z-01 17 28772947 28772947 C A CPD Missense_Mutation p.L928M 0.16 tolerated(0.18) possibly_damaging(0.786) TCGA-VS-A94Z-01 17 29702276 29702276 G C NF1 3'UTR 0.25 TCGA-VS-A94Z-01 17 30372771 30372771 G A LRRC37B Missense_Mutation p.E726K 0.13 deleterious(0) possibly_damaging(0.636) TCGA-VS-A94Z-01 17 3324343 3324343 C T OR3A3 Missense_Mutation p.A161V 0.21 deleterious(0) possibly_damaging(0.772) TCGA-VS-A94Z-01 17 33288483 33288483 G A CCT6B 5'UTR 0.21 TCGA-VS-A94Z-01 17 34072874 34072874 A G GAS2L2 Missense_Mutation p.S548P 0.17 tolerated(0.15) benign(0.017) TCGA-VS-A94Z-01 17 3514211 3514211 C T SHPK Silent p.Q360Q 0.14 TCGA-VS-A94Z-01 17 3559854 3559854 G T CTNS Missense_Mutation p.G179C 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-VS-A94Z-01 17 37331555 37331555 C T CACNB1 Missense_Mutation p.R563Q 0.11 tolerated_low_confidence(0.08) benign(0.001) TCGA-VS-A94Z-01 17 38244620 38244620 G A THRA Silent p.K283K 0.41 TCGA-VS-A94Z-01 17 38246270 38246270 T C THRA Intron 0.25 TCGA-VS-A94Z-01 17 38340523 38340523 T C RAPGEFL1 Silent p.C13C 0.14 TCGA-VS-A94Z-01 17 38798596 38798596 A - SMARCE1 Intron 0.19 TCGA-VS-A94Z-01 17 38854546 38854546 C T KRT24 Silent p.V507V 0.23 TCGA-VS-A94Z-01 17 39254164 39254164 A G KRTAP4-8 Missense_Mutation p.V58A 0.09 tolerated(0.09) unknown(0) TCGA-VS-A94Z-01 17 40744173 40744174 - A FAM134C Frame_Shift_Ins p.A83Cfs*22 0.16 TCGA-VS-A94Z-01 17 41007538 41007538 C - AOC3 Frame_Shift_Del p.T657Lfs*22 0.11 TCGA-VS-A94Z-01 17 41622708 41622708 C T ETV4 Missense_Mutation p.E30K 0.24 tolerated(0.71) benign(0.179) TCGA-VS-A94Z-01 17 42155409 42155409 G A HDAC5 3'UTR 0.18 TCGA-VS-A94Z-01 17 42287567 42287567 C G UBTF Missense_Mutation p.M517I 0.32 tolerated(0.17) benign(0.011) TCGA-VS-A94Z-01 17 42288511 42288511 C T UBTF Missense_Mutation p.E367K 0.36 deleterious(0.03) benign(0.354) TCGA-VS-A94Z-01 17 43229417 43229417 G C HEXIM1 3'UTR 0.24 TCGA-VS-A94Z-01 17 43364390 43364390 C T MAP3K14 RNA 0.14 TCGA-VS-A94Z-01 17 4536733 4536733 G C ALOX15 Silent p.V408V 0.23 TCGA-VS-A94Z-01 17 46684998 46684998 G T HOXB7 3'UTR 0.18 TCGA-VS-A94Z-01 17 47583890 47583890 C T NGFR Silent p.C146C 0.33 TCGA-VS-A94Z-01 17 47656573 47656573 G A NXPH3 Missense_Mutation p.A224T 0.27 tolerated(0.4) benign(0.075) TCGA-VS-A94Z-01 17 48226782 48226783 - C PPP1R9B Frame_Shift_Ins p.V364Gfs*12 0.30 TCGA-VS-A94Z-01 17 53798136 53798136 A - TMEM100 Frame_Shift_Del p.L99Yfs*2 0.14 TCGA-VS-A94Z-01 17 56688682 56688682 G T TEX14 Missense_Mutation p.L348M 0.09 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 17 57771826 57771826 T C CLTC 3'UTR 0.17 TCGA-VS-A94Z-01 17 59466007 59466007 C T BCAS3 Intron 0.17 TCGA-VS-A94Z-01 17 59485706 59485706 C T TBX2 Missense_Mutation p.P660S 0.27 tolerated(0.33) probably_damaging(0.994) TCGA-VS-A94Z-01 17 59947154 59947154 G C INTS2 Missense_Mutation p.L1000V 0.28 tolerated(0.34) probably_damaging(0.975) TCGA-VS-A94Z-01 17 59975040 59975040 C T INTS2 Silent p.A464A 0.17 TCGA-VS-A94Z-01 17 6023726 6023726 G T WSCD1 Missense_Mutation p.E491D 0.10 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 17 61566421 61566421 C T ACE Missense_Mutation p.R857C 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-VS-A94Z-01 17 61611516 61611516 C T KCNH6 Silent p.I315I 0.21 TCGA-VS-A94Z-01 17 61864405 61864405 G A DDX42 5'UTR 0.27 TCGA-VS-A94Z-01 17 61904840 61904840 G A PSMC5 5'UTR 0.18 TCGA-VS-A94Z-01 17 6386863 6386863 G A PITPNM3 Silent p.C187C 0.33 TCGA-VS-A94Z-01 17 6981414 6981414 G A CLEC10A Missense_Mutation p.S29F 0.10 tolerated(0.35) probably_damaging(0.924) TCGA-VS-A94Z-01 17 71167119 71167119 G T SSTR2 3'UTR 0.19 TCGA-VS-A94Z-01 17 7320641 7320641 C T NLGN2 Silent p.S677S 0.33 TCGA-VS-A94Z-01 17 73491063 73491063 C - KIAA0195 Frame_Shift_Del p.S895Pfs*13 0.24 TCGA-VS-A94Z-01 17 73725391 73725391 G A ITGB4 Silent p.K204K 0.28 TCGA-VS-A94Z-01 17 73725422 73725422 G C ITGB4 Missense_Mutation p.E215Q 0.23 tolerated(0.28) probably_damaging(0.912) TCGA-VS-A94Z-01 17 73774213 73774213 A T H3F3B 3'UTR 0.07 TCGA-VS-A94Z-01 17 75210055 75210055 G A SEC14L1 Missense_Mutation p.A700T 0.05 tolerated(0.24) possibly_damaging(0.621) TCGA-VS-A94Z-01 17 75494608 75494608 G A SEPT9 Silent p.T543T 0.21 TCGA-VS-A94Z-01 17 76499046 76499046 G C DNAH17 Silent p.L1664L 0.20 TCGA-VS-A94Z-01 17 77076355 77076355 G A ENGASE Missense_Mutation p.R211H 0.14 tolerated(0.12) benign(0.052) TCGA-VS-A94Z-01 17 77755582 77755582 C T CBX2 Silent p.S90S 0.20 TCGA-VS-A94Z-01 17 78069241 78069241 C T CCDC40 Silent p.D1004D 0.06 TCGA-VS-A94Z-01 17 78796023 78796023 A G RPTOR Missense_Mutation p.R305G 0.26 deleterious(0) probably_damaging(0.996) TCGA-VS-A94Z-01 17 79892208 79892208 C T PYCR1 Missense_Mutation p.R264H 0.07 deleterious(0) possibly_damaging(0.758) TCGA-VS-A94Z-01 17 80274002 80274002 C - CD7 Intron 0.12 TCGA-VS-A94Z-01 17 80684761 80684761 A G FN3KRP Missense_Mutation p.H215R 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 18 13884669 13884669 G C MC2R Silent p.L283L 0.36 TCGA-VS-A94Z-01 18 13884969 13884969 C T MC2R Silent p.P183P 0.17 TCGA-VS-A94Z-01 18 18533543 18533543 T - ROCK1 Frame_Shift_Del p.T1353Lfs*71 0.11 TCGA-VS-A94Z-01 18 21735854 21735854 G A CABYR Missense_Mutation p.G130D 0.11 tolerated_low_confidence(0.64) benign(0.005) TCGA-VS-A94Z-01 18 28713982 28713982 C G DSC1 Missense_Mutation p.R663T 0.26 tolerated(0.47) benign(0.029) TCGA-VS-A94Z-01 18 29410154 29410154 A - TRAPPC8 3'UTR 0.14 TCGA-VS-A94Z-01 18 39535196 39535196 T C PIK3C3 5'UTR 0.25 TCGA-VS-A94Z-01 18 43248363 43248363 C G SLC14A2 Missense_Mutation p.L653V 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A94Z-01 18 43532434 43532434 G C EPG5 Missense_Mutation p.S395C 0.20 deleterious(0) probably_damaging(0.987) TCGA-VS-A94Z-01 18 44057270 44057270 C G LOXHD1 Intron 0.25 TCGA-VS-A94Z-01 18 44284607 44284607 C T ST8SIA5 Missense_Mutation p.G51E 0.11 benign(0.023) TCGA-VS-A94Z-01 18 44559818 44559818 C T TCEB3B Silent p.E606E 0.11 TCGA-VS-A94Z-01 18 55153929 55153929 T - ONECUT2 3'UTR 0.13 TCGA-VS-A94Z-01 18 57570484 57570484 C T PMAIP1 3'UTR 0.18 TCGA-VS-A94Z-01 18 57570524 57570524 C T PMAIP1 3'UTR 0.24 TCGA-VS-A94Z-01 18 67995823 67995823 C T SOCS6 3'UTR 0.14 TCGA-VS-A94Z-01 18 67996451 67996451 C T SOCS6 3'UTR 0.25 TCGA-VS-A94Z-01 18 70204098 70204100 TAA - CBLN2 3'UTR 0.12 TCGA-VS-A94Z-01 18 74563867 74563867 C T ZNF236 Missense_Mutation p.A110V 0.12 deleterious(0.01) probably_damaging(0.939) TCGA-VS-A94Z-01 18 74607062 74607062 G A ZNF236 Missense_Mutation p.R502H 0.18 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 19 10401801 10401801 G C ICAM5 Missense_Mutation p.E46Q 0.08 tolerated(0.19) probably_damaging(0.963) TCGA-VS-A94Z-01 19 10789363 10789363 C A ILF3 Missense_Mutation p.H212N 0.20 deleterious(0) probably_damaging(0.912) TCGA-VS-A94Z-01 19 1080092 1080092 G C HMHA1 Missense_Mutation p.E576Q 0.16 deleterious(0.04) possibly_damaging(0.82) TCGA-VS-A94Z-01 19 11038497 11038497 T A YIPF2 Missense_Mutation p.E57V 0.17 tolerated(0.19) benign(0.104) TCGA-VS-A94Z-01 19 11347061 11347061 G A DOCK6 Missense_Mutation p.R785C 0.12 tolerated(0.09) benign(0.276) TCGA-VS-A94Z-01 19 11617163 11617163 G T ECSIT Missense_Mutation p.Q378K 0.13 deleterious(0) possibly_damaging(0.764) TCGA-VS-A94Z-01 19 11664584 11664584 C T ELOF1 Missense_Mutation p.A77T 0.21 deleterious(0.02) possibly_damaging(0.899) TCGA-VS-A94Z-01 19 12739502 12739502 A - ZNF791 Frame_Shift_Del p.K388Nfs*10 0.16 TCGA-VS-A94Z-01 19 12779376 12779376 G A WDR83OS Missense_Mutation p.S71F 0.19 deleterious(0.03) probably_damaging(0.943) TCGA-VS-A94Z-01 19 12987167 12987167 G A DNASE2 Silent p.S240S 0.18 TCGA-VS-A94Z-01 19 14041431 14041431 C A CC2D1A 3'UTR 0.23 TCGA-VS-A94Z-01 19 1428991 1428991 C T DAZAP1 Nonsense_Mutation p.Q233* 0.09 TCGA-VS-A94Z-01 19 14876511 14876511 C T EMR2 Missense_Mutation p.R247K 0.12 tolerated(1) benign(0) TCGA-VS-A94Z-01 19 15131286 15131286 G T CCDC105 Missense_Mutation p.C230F 0.23 deleterious(0) probably_damaging(0.997) TCGA-VS-A94Z-01 19 15296202 15296203 - CA NOTCH3 Frame_Shift_Ins p.E721Vfs*140 0.12 TCGA-VS-A94Z-01 19 1599556 1599556 G A UQCR11 Silent p.V18V 0.20 TCGA-VS-A94Z-01 19 17039945 17039945 C T CPAMD8 Missense_Mutation p.R1031H 0.11 tolerated(0.82) benign(0.008) TCGA-VS-A94Z-01 19 17163743 17163743 C A HAUS8 Missense_Mutation p.R274L 0.12 tolerated(0.25) benign(0.13) TCGA-VS-A94Z-01 19 18170406 18170406 G A IL12RB1 3'UTR 0.20 TCGA-VS-A94Z-01 19 1820047 1820047 C T REXO1 Missense_Mutation p.E846K 0.22 deleterious(0.02) possibly_damaging(0.906) TCGA-VS-A94Z-01 19 18648485 18648485 C T FKBP8 Missense_Mutation p.A291T 0.10 tolerated(0.11) benign(0.311) TCGA-VS-A94Z-01 19 19337577 19337577 C - NCAN Frame_Shift_Del p.S454Afs*33 0.13 TCGA-VS-A94Z-01 19 19381909 19381909 C T TM6SF2 Missense_Mutation p.A41T 0.11 tolerated(0.23) benign(0.003) TCGA-VS-A94Z-01 19 19626210 19626210 T A TSSK6 Missense_Mutation p.E9D 0.16 tolerated(0.11) benign(0.002) TCGA-VS-A94Z-01 19 22000739 22000739 T G ZNF43 Missense_Mutation p.K60N 0.10 deleterious(0.03) possibly_damaging(0.535) TCGA-VS-A94Z-01 19 2213994 2213994 C T DOT1L Intron 0.30 TCGA-VS-A94Z-01 19 23433133 23433133 G C ZNF724P 5'UTR 0.25 TCGA-VS-A94Z-01 19 33870313 33870313 G A CEBPG Silent p.S56S 0.22 TCGA-VS-A94Z-01 19 34818694 34818694 G T KIAA0355 Nonsense_Mutation p.E289* 0.14 TCGA-VS-A94Z-01 19 37130018 37130018 T G ZNF461 Missense_Mutation p.K410T 0.08 deleterious(0) benign(0.258) TCGA-VS-A94Z-01 19 37383062 37383062 G T ZNF829 Missense_Mutation p.P292T 0.25 deleterious(0.05) benign(0.003) TCGA-VS-A94Z-01 19 3738997 3738997 G A TJP3 Missense_Mutation p.G508D 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 19 37854621 37854621 C T HKR1 Missense_Mutation p.R642W 0.23 deleterious(0.01) possibly_damaging(0.675) TCGA-VS-A94Z-01 19 3827532 3827532 G A ZFR2 Silent p.C324C 0.36 TCGA-VS-A94Z-01 19 39516133 39516133 C T FBXO27 Missense_Mutation p.G257D 0.29 deleterious(0.05) probably_damaging(1) TCGA-VS-A94Z-01 19 39668366 39668366 C - PAK4 Frame_Shift_Del p.Y515Tfs*10 0.24 TCGA-VS-A94Z-01 19 39868265 39868265 G A SAMD4B Silent p.P415P 0.33 TCGA-VS-A94Z-01 19 39868329 39868329 G A SAMD4B Missense_Mutation p.E437K 0.45 tolerated(0.29) benign(0.002) TCGA-VS-A94Z-01 19 40382785 40382785 C T FCGBP Silent p.S3367S 0.11 TCGA-VS-A94Z-01 19 41025405 41025405 G A SPTBN4 Missense_Mutation p.A1001T 0.10 tolerated(0.42) benign(0.001) TCGA-VS-A94Z-01 19 41235175 41235175 G A ITPKC Missense_Mutation p.E442K 0.25 tolerated(0.09) possibly_damaging(0.782) TCGA-VS-A94Z-01 19 41352884 41352885 - T CYP2A6 Frame_Shift_Ins p.G243Rfs*27 0.23 TCGA-VS-A94Z-01 19 4216648 4216648 C T ANKRD24 Silent p.D497D 0.15 TCGA-VS-A94Z-01 19 42373233 42373233 G T RPS19 Missense_Mutation p.R102L 0.11 tolerated(0.08) benign(0.006) TCGA-VS-A94Z-01 19 42399456 42399456 C T ARHGEF1 Silent p.G319G 0.07 TCGA-VS-A94Z-01 19 42731466 42731466 G C ZNF526 3'UTR 0.14 TCGA-VS-A94Z-01 19 42731505 42731505 G C ZNF526 3'UTR 0.17 TCGA-VS-A94Z-01 19 42930437 42930437 T C LIPE Missense_Mutation p.R289G 0.15 deleterious_low_confidence(0.02) benign(0.003) TCGA-VS-A94Z-01 19 43773536 43773536 C A PSG9 Missense_Mutation p.K16N 0.25 deleterious(0.02) possibly_damaging(0.889) TCGA-VS-A94Z-01 19 44585275 44585275 C T ZNF284 Silent p.F41F 0.17 TCGA-VS-A94Z-01 19 46027876 46027876 G A VASP Silent p.T335T 0.15 TCGA-VS-A94Z-01 19 46290128 46290128 C T DMWD Missense_Mutation p.R209Q 0.25 deleterious(0.01) benign(0.031) TCGA-VS-A94Z-01 19 46388615 46388615 G A IRF2BP1 Silent p.L140L 0.10 TCGA-VS-A94Z-01 19 46973752 46973752 C A PNMAL1 Nonsense_Mutation p.E181* 0.40 TCGA-VS-A94Z-01 19 48922927 48922927 C - GRIN2D Frame_Shift_Del p.R651Gfs*31 0.11 TCGA-VS-A94Z-01 19 49001576 49001576 G - LMTK3 Frame_Shift_Del p.P946Qfs*3 0.21 TCGA-VS-A94Z-01 19 49141368 49141368 G T CA11 3'UTR 0.15 TCGA-VS-A94Z-01 19 49558185 49558185 G C CGB7 Missense_Mutation p.I32M 0.36 deleterious(0.01) possibly_damaging(0.815) TCGA-VS-A94Z-01 19 49797145 49797145 G A SLC6A16 Silent p.G519G 0.09 TCGA-VS-A94Z-01 19 49994493 49994493 C T RPL13A Intron 0.13 TCGA-VS-A94Z-01 19 50155597 50155597 G A SCAF1 Missense_Mutation p.G651S 0.31 unknown(0) TCGA-VS-A94Z-01 19 50156683 50156683 G C SCAF1 Missense_Mutation p.E1013Q 0.12 unknown(0) TCGA-VS-A94Z-01 19 50156755 50156755 G A SCAF1 Missense_Mutation p.E1037K 0.14 unknown(0) TCGA-VS-A94Z-01 19 50265316 50265316 G - TSKS Frame_Shift_Del p.P115Lfs*19 0.25 TCGA-VS-A94Z-01 19 50826497 50826497 C T KCNC3 Silent p.S571S 0.12 TCGA-VS-A94Z-01 19 51017813 51017813 T C ASPDH 5'Flank 0.16 TCGA-VS-A94Z-01 19 51671447 51671447 C - CTD-3187F8.14 Intron 0.20 TCGA-VS-A94Z-01 19 5210755 5210755 G A PTPRS Missense_Mutation p.R1766C 0.23 deleterious(0) probably_damaging(0.997) TCGA-VS-A94Z-01 19 52825845 52825845 A G ZNF480 Missense_Mutation p.I448V 0.17 tolerated(0.06) benign(0.217) TCGA-VS-A94Z-01 19 53013851 53013851 G A ZNF578 Missense_Mutation p.E73K 0.20 tolerated(0.41) probably_damaging(0.991) TCGA-VS-A94Z-01 19 53571738 53571738 G A ZNF160 Silent p.G683G 0.15 TCGA-VS-A94Z-01 19 53886043 53886043 C T ZNF525 3'UTR 0.09 TCGA-VS-A94Z-01 19 54228719 54228719 G A MIR516B2 RNA 0.08 TCGA-VS-A94Z-01 19 54304516 54304516 G A NLRP12 Silent p.G907G 0.11 TCGA-VS-A94Z-01 19 54312838 54312839 - A NLRP12 Intron 0.13 TCGA-VS-A94Z-01 19 54327468 54327468 G C NLRP12 5'UTR 0.21 TCGA-VS-A94Z-01 19 54664767 54664767 G A TMC4 Silent p.I613I 0.13 TCGA-VS-A94Z-01 19 54677981 54677981 C G MBOAT7 Missense_Mutation p.Q392H 0.30 deleterious(0) probably_damaging(0.962) TCGA-VS-A94Z-01 19 54932514 54932514 C T TTYH1 Silent p.S123S 0.16 TCGA-VS-A94Z-01 19 54967885 54967885 G A LENG8 Missense_Mutation p.E506K 0.16 tolerated(0.08) benign(0.175) TCGA-VS-A94Z-01 19 55239237 55239237 C T KIR3DL3 Silent p.H172H 0.63 TCGA-VS-A94Z-01 19 55949075 55949075 C T SHISA7 Silent p.T291T 0.11 TCGA-VS-A94Z-01 19 56180119 56180119 C T U2AF2 Silent p.Y302Y 0.23 TCGA-VS-A94Z-01 19 56600284 56600284 C T ZNF787 Missense_Mutation p.R86H 0.17 deleterious(0) probably_damaging(0.998) TCGA-VS-A94Z-01 19 5667115 5667115 G - SAFB Frame_Shift_Del p.G800Afs*8 0.12 TCGA-VS-A94Z-01 19 5680568 5680568 C G C19orf70 5'UTR 0.36 TCGA-VS-A94Z-01 19 5684870 5684870 G - HSD11B1L Frame_Shift_Del p.A11Pfs*24 0.20 TCGA-VS-A94Z-01 19 57134688 57134689 - A ZNF71 3'UTR 0.20 TCGA-VS-A94Z-01 19 57746777 57746777 G T AURKC Missense_Mutation p.A308S 0.17 tolerated_low_confidence(0.13) benign(0.014) TCGA-VS-A94Z-01 19 5783005 5783005 C A PRR22 Missense_Mutation p.G418V 0.19 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-VS-A94Z-01 19 57889127 57889127 T A ZNF547 Silent p.V261V 0.26 TCGA-VS-A94Z-01 19 57931376 57931376 G A ZNF17 Silent p.K172K 0.09 TCGA-VS-A94Z-01 19 58153331 58153331 A G ZNF211 Missense_Mutation p.K558E 0.22 deleterious(0.03) probably_damaging(0.912) TCGA-VS-A94Z-01 19 58324783 58324783 T C ZNF552 Silent p.T13T 0.09 TCGA-VS-A94Z-01 19 5978141 5978141 G A RANBP3 5'UTR 0.17 TCGA-VS-A94Z-01 19 621287 621287 C T POLRMT Missense_Mutation p.G804D 0.16 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 19 6381621 6381621 G C GTF2F1 Missense_Mutation p.S281C 0.21 deleterious(0) possibly_damaging(0.855) TCGA-VS-A94Z-01 19 6692960 6692960 G A C3 Missense_Mutation p.A1122V 0.07 deleterious(0) benign(0.138) TCGA-VS-A94Z-01 19 6732304 6732304 C G GPR108 Missense_Mutation p.K365N 0.23 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 19 7122685 7122685 G A INSR Missense_Mutation p.H1157Y 0.10 deleterious(0.02) probably_damaging(0.978) TCGA-VS-A94Z-01 19 7692203 7692203 G T XAB2 Missense_Mutation p.P150T 0.12 tolerated(0.08) benign(0.271) TCGA-VS-A94Z-01 19 8436252 8436252 C T ANGPTL4 Silent p.G295G 0.30 TCGA-VS-A94Z-01 19 8503750 8503750 C T MARCH2 3'UTR 0.11 TCGA-VS-A94Z-01 19 8807779 8807779 G A ACTL9 3'UTR 0.20 TCGA-VS-A94Z-01 19 8922576 8922576 A T ZNF558 Missense_Mutation p.I197N 0.12 deleterious(0.01) possibly_damaging(0.876) TCGA-VS-A94Z-01 19 9002511 9002511 G A MUC16 Silent p.L13435L 0.16 TCGA-VS-A94Z-01 19 9297921 9297921 C A OR7D2 3'UTR 0.21 TCGA-VS-A94Z-01 1 100613525 100613525 G A TRMT13 Missense_Mutation p.R298H 0.08 deleterious(0.02) benign(0.235) TCGA-VS-A94Z-01 1 10093590 10093590 C G UBE4B 5'Flank 0.25 TCGA-VS-A94Z-01 1 108315439 108315441 TCT - VAV3 In_Frame_Del p.E157del 0.18 TCGA-VS-A94Z-01 1 109808371 109808371 G A CELSR2 Silent p.R1914R 0.11 TCGA-VS-A94Z-01 1 109964511 109964511 G C PSMA5 Missense_Mutation p.Q23E 0.14 deleterious(0.01) probably_damaging(1) TCGA-VS-A94Z-01 1 110553908 110553908 G A AHCYL1 Missense_Mutation p.S102N 0.29 tolerated(0.51) benign(0) TCGA-VS-A94Z-01 1 11291364 11291364 C T MTOR Missense_Mutation p.R881H 0.11 deleterious(0) probably_damaging(0.98) TCGA-VS-A94Z-01 1 114226322 114226322 G C MAGI3 Missense_Mutation p.E1378Q 0.22 tolerated_low_confidence(0.58) benign(0.004) TCGA-VS-A94Z-01 1 114680471 114680471 G A SYT6 Silent p.Y154Y 0.29 TCGA-VS-A94Z-01 1 116238056 116238056 G A VANGL1 3'UTR 0.09 TCGA-VS-A94Z-01 1 116935476 116935476 C T ATP1A1 Missense_Mutation p.R445W 0.24 deleterious(0) benign(0.356) TCGA-VS-A94Z-01 1 1170307 1170307 C A B3GALT6 3'UTR 0.08 TCGA-VS-A94Z-01 1 117617988 117617988 T - TTF2 Frame_Shift_Del p.L262Cfs*11 0.10 TCGA-VS-A94Z-01 1 11771980 11771980 G A DRAXIN Missense_Mutation p.E239K 0.27 deleterious(0) probably_damaging(0.997) TCGA-VS-A94Z-01 1 12294280 12294280 G C VPS13D 5'UTR 0.29 TCGA-VS-A94Z-01 1 145473808 145473808 C G ANKRD34A Silent p.L160L 0.22 TCGA-VS-A94Z-01 1 145473935 145473935 C G ANKRD34A Missense_Mutation p.R203G 0.21 tolerated(0.4) benign(0) TCGA-VS-A94Z-01 1 145474333 145474333 C T ANKRD34A Silent p.R335R 0.19 TCGA-VS-A94Z-01 1 145563014 145563014 G A ANKRD35 Missense_Mutation p.R901H 0.08 deleterious(0) probably_damaging(0.996) TCGA-VS-A94Z-01 1 146408066 146408066 G A NBPF12 Missense_Mutation p.R567H 0.45 benign(0.018) TCGA-VS-A94Z-01 1 149856647 149856647 G A HIST2H2BE 3'UTR 0.19 TCGA-VS-A94Z-01 1 151150570 151150570 C T VPS72 Missense_Mutation p.R205Q 0.25 deleterious(0.01) benign(0.023) TCGA-VS-A94Z-01 1 151317002 151317002 C T RFX5 Missense_Mutation p.E122K 0.17 deleterious(0.02) possibly_damaging(0.672) TCGA-VS-A94Z-01 1 151823532 151823532 G - THEM5 Frame_Shift_Del p.P154Qfs*12 0.14 TCGA-VS-A94Z-01 1 153916547 153916547 G - DENND4B Frame_Shift_Del p.L102Sfs*197 0.13 TCGA-VS-A94Z-01 1 15392343 15392343 C T KAZN Intron 0.15 TCGA-VS-A94Z-01 1 154530772 154530772 C T UBE2Q1 Silent p.A86A 0.29 TCGA-VS-A94Z-01 1 155160700 155160700 G A MUC1 Missense_Mutation p.S276F 0.26 deleterious(0.03) probably_damaging(0.997) TCGA-VS-A94Z-01 1 155160889 155160889 G C MUC1 Nonsense_Mutation p.S213* 0.17 TCGA-VS-A94Z-01 1 155176090 155176090 G A THBS3 Missense_Mutation p.R63C 0.24 deleterious(0) possibly_damaging(0.836) TCGA-VS-A94Z-01 1 155736495 155736495 A G GON4L Silent p.S923S 0.15 TCGA-VS-A94Z-01 1 155927561 155927561 G A ARHGEF2 Missense_Mutation p.T553I 0.40 deleterious(0) benign(0.328) TCGA-VS-A94Z-01 1 156437073 156437073 C T MEF2D 3'UTR 0.11 TCGA-VS-A94Z-01 1 15656049 15656049 T - FHAD1 Frame_Shift_Del p.S247Lfs*12 0.13 TCGA-VS-A94Z-01 1 15679397 15679397 G A FHAD1 Missense_Mutation p.E40K 0.24 deleterious(0) probably_damaging(0.994) TCGA-VS-A94Z-01 1 158227244 158227244 C T CD1A Missense_Mutation p.A306V 0.15 tolerated(0.09) probably_damaging(0.994) TCGA-VS-A94Z-01 1 15855633 15855634 - T DNAJC16 Frame_Shift_Ins p.I14Dfs*16 0.20 TCGA-VS-A94Z-01 1 15953169 15953169 C A DDI2 Silent p.V48V 0.07 TCGA-VS-A94Z-01 1 160302256 160302256 G A COPA Missense_Mutation p.R160C 0.09 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 1 160466091 160466091 C T SLAMF6 Missense_Mutation p.E48K 0.18 tolerated(0.3) benign(0.064) TCGA-VS-A94Z-01 1 161130833 161130834 - T USP21 Frame_Shift_Ins p.G136Wfs*12 0.26 TCGA-VS-A94Z-01 1 161134660 161134660 A - USP21 Frame_Shift_Del p.S476Vfs*3 0.24 TCGA-VS-A94Z-01 1 161183442 161183442 G A NDUFS2 Missense_Mutation p.E406K 0.27 deleterious(0) probably_damaging(0.985) TCGA-VS-A94Z-01 1 16269636 16269636 C T ZBTB17 Missense_Mutation p.R584H 0.10 deleterious(0) probably_damaging(0.996) TCGA-VS-A94Z-01 1 163309214 163309214 G A NUF2 Missense_Mutation p.D185N 0.21 tolerated(0.14) possibly_damaging(0.529) TCGA-VS-A94Z-01 1 16474977 16474977 C - EPHA2 Frame_Shift_Del p.G240Vfs*153 0.23 TCGA-VS-A94Z-01 1 169351458 169351458 A - BLZF1 Frame_Shift_Del p.K321Rfs*21 0.22 TCGA-VS-A94Z-01 1 169822556 169822556 A - C1orf112 3'UTR 0.27 TCGA-VS-A94Z-01 1 1737973 1737973 G C GNB1 Missense_Mutation p.L70V 0.08 tolerated(0.12) benign(0.04) TCGA-VS-A94Z-01 1 175048588 175048588 G A TNN Missense_Mutation p.G177S 0.20 tolerated(0.06) benign(0.016) TCGA-VS-A94Z-01 1 175375460 175375460 C T TNR Missense_Mutation p.A131T 0.09 tolerated(0.41) benign(0.001) TCGA-VS-A94Z-01 1 176998566 176998566 G A ASTN1 Intron 0.06 TCGA-VS-A94Z-01 1 177226280 177226280 C T BRINP2 Intron 0.11 TCGA-VS-A94Z-01 1 178819383 178819383 T - ANGPTL1 3'UTR 0.20 TCGA-VS-A94Z-01 1 182544530 182544530 G A RNASEL Silent p.C741C 0.36 TCGA-VS-A94Z-01 1 184006678 184006678 T C COLGALT2 5'UTR 0.23 TCGA-VS-A94Z-01 1 185931753 185931753 C A HMCN1 Silent p.A644A 0.28 TCGA-VS-A94Z-01 1 185964090 185964090 C T HMCN1 Missense_Mutation p.H1217Y 0.13 benign(0.121) TCGA-VS-A94Z-01 1 186050472 186050472 G A HMCN1 Silent p.Q2911Q 0.16 TCGA-VS-A94Z-01 1 186269280 186269280 A G PRG4 Missense_Mutation p.N45S 0.31 possibly_damaging(0.651) TCGA-VS-A94Z-01 1 19612714 19612714 C T AKR7A3 Missense_Mutation p.E123K 0.25 tolerated(0.05) possibly_damaging(0.711) TCGA-VS-A94Z-01 1 19653834 19653834 C T PQLC2 Silent p.S244S 0.24 TCGA-VS-A94Z-01 1 197125974 197125974 G A ZBTB41 3'UTR 0.12 TCGA-VS-A94Z-01 1 200776602 200776602 T - CAMSAP2 Frame_Shift_Del p.Q169Kfs*17 0.20 TCGA-VS-A94Z-01 1 200942640 200942640 A G KIF21B 3'Flank 0.23 TCGA-VS-A94Z-01 1 201052441 201052441 C G CACNA1S Missense_Mutation p.W414C 0.16 deleterious(0.01) probably_damaging(0.91) TCGA-VS-A94Z-01 1 201618078 201618078 C G NAV1 Silent p.L94L 0.23 TCGA-VS-A94Z-01 1 202731839 202731839 T - KDM5B Frame_Shift_Del p.A303Pfs*37 0.12 TCGA-VS-A94Z-01 1 202849630 202849630 G C RABIF 3'UTR 0.27 TCGA-VS-A94Z-01 1 203770937 203770946 TGGTTTTGAT GGTTTTGA ZC3H11A 5'UTR 0.12 TCGA-VS-A94Z-01 1 206902147 206902147 C T MAPKAPK2 Silent p.Y124Y 0.17 TCGA-VS-A94Z-01 1 207647611 207647611 C G CR2 Missense_Mutation p.Q756E 0.29 tolerated(0.36) benign(0.005) TCGA-VS-A94Z-01 1 208206855 208206855 C A PLXNA2 Splice_Site p.X1622_splice 0.20 TCGA-VS-A94Z-01 1 210591661 210591661 G A HHAT Nonsense_Mutation p.W284* 0.07 TCGA-VS-A94Z-01 1 211280631 211280631 G A KCNH1 Silent p.H56H 0.19 TCGA-VS-A94Z-01 1 2113855 2113855 C A PRKCZ Intron 0.13 TCGA-VS-A94Z-01 1 212793891 212793891 T G ATF3 3'UTR 0.44 TCGA-VS-A94Z-01 1 214794282 214794282 G C CENPF Missense_Mutation p.Q286H 0.50 probably_damaging(0.98) TCGA-VS-A94Z-01 1 214795547 214795547 G T CENPF Nonsense_Mutation p.E331* 0.21 TCGA-VS-A94Z-01 1 216676761 216676761 G A ESRRG 3'UTR 0.09 TCGA-VS-A94Z-01 1 220836294 220836295 - A MARK1 3'Flank 0.16 TCGA-VS-A94Z-01 1 22179211 22179211 C T HSPG2 Missense_Mutation p.E2236K 0.12 benign(0.003) TCGA-VS-A94Z-01 1 223164880 223164880 A G DISP1 Missense_Mutation p.T228A 0.20 deleterious(0) probably_damaging(0.991) TCGA-VS-A94Z-01 1 223175972 223175972 C T DISP1 Silent p.C411C 0.08 TCGA-VS-A94Z-01 1 2238304 2238304 G A SKI 3'UTR 0.23 TCGA-VS-A94Z-01 1 227178600 227178600 T C CDC42BPA 3'UTR 0.29 TCGA-VS-A94Z-01 1 227618593 227618593 G A CTD-2090I13.1 RNA 0.15 TCGA-VS-A94Z-01 1 228285603 228285603 G A ARF1 Silent p.L145L 0.18 TCGA-VS-A94Z-01 1 228404211 228404211 G A OBSCN Missense_Mutation p.E729K 0.26 probably_damaging(0.995) TCGA-VS-A94Z-01 1 231064801 231064801 G - TTC13 Frame_Shift_Del p.T448Rfs*25 0.25 TCGA-VS-A94Z-01 1 236647626 236647626 C A EDARADD 3'Flank 0.08 TCGA-VS-A94Z-01 1 236702220 236702220 G A LGALS8 Missense_Mutation p.R59Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-VS-A94Z-01 1 23761059 23761059 G A ASAP3 Missense_Mutation p.S601F 0.29 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 1 237789019 237789019 G A RYR2 Silent p.G2027G 0.06 TCGA-VS-A94Z-01 1 24201048 24201048 C A CNR2 Missense_Mutation p.D354Y 0.23 deleterious_low_confidence(0.03) benign(0.094) TCGA-VS-A94Z-01 1 242253062 242253062 A - PLD5 3'UTR 0.10 TCGA-VS-A94Z-01 1 243471304 243471304 G C SDCCAG8 Missense_Mutation p.E252Q 0.06 tolerated(0.22) benign(0.068) TCGA-VS-A94Z-01 1 24483470 24483470 A G IFNLR1 3'UTR 0.50 TCGA-VS-A94Z-01 1 247055121 247055121 C G AHCTF1 Missense_Mutation p.L644F 0.16 tolerated(0.39) benign(0.019) TCGA-VS-A94Z-01 1 28893908 28893908 C T TRNAU1AP Silent p.S171S 0.15 TCGA-VS-A94Z-01 1 2938376 2938376 G A ACTRT2 Silent p.L42L 0.26 TCGA-VS-A94Z-01 1 29508194 29508194 C A SRSF4 Missense_Mutation p.G24V 0.28 deleterious(0.01) probably_damaging(0.949) TCGA-VS-A94Z-01 1 29649984 29649984 C G PTPRU Silent p.V1320V 0.36 TCGA-VS-A94Z-01 1 33613159 33613159 G A TRIM62 Silent p.G349G 0.14 TCGA-VS-A94Z-01 1 33764672 33764672 C T ZNF362 3'UTR 0.25 TCGA-VS-A94Z-01 1 33998726 33998726 G A CSMD2 Silent p.F3221F 0.19 TCGA-VS-A94Z-01 1 36645354 36645354 G A MAP7D1 Nonsense_Mutation p.W773* 0.24 TCGA-VS-A94Z-01 1 36941071 36941071 G A CSF3R Missense_Mutation p.P90S 0.11 deleterious(0.04) benign(0.39) TCGA-VS-A94Z-01 1 39927669 39927669 C T MACF1 Missense_Mutation p.A5154V 0.19 probably_damaging(0.978) TCGA-VS-A94Z-01 1 40131312 40131312 G A NT5C1A Missense_Mutation p.A105V 0.15 tolerated(0.49) benign(0.41) TCGA-VS-A94Z-01 1 40309781 40309781 T A TRIT1 Missense_Mutation p.E409V 0.26 deleterious(0) probably_damaging(0.969) TCGA-VS-A94Z-01 1 40366613 40366613 G A MYCL Missense_Mutation p.S195L 0.30 tolerated(0.06) benign(0.09) TCGA-VS-A94Z-01 1 40705432 40705432 T C RLF Silent p.C1686C 0.12 TCGA-VS-A94Z-01 1 44083434 44083434 C T PTPRF Missense_Mutation p.A1408V 0.14 deleterious(0) possibly_damaging(0.785) TCGA-VS-A94Z-01 1 45469193 45469193 C T HECTD3 Missense_Mutation p.D853N 0.27 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 1 46165653 46165653 G A IPP Silent p.G580G 0.17 TCGA-VS-A94Z-01 1 49201992 49201992 C T BEND5 Missense_Mutation p.V343I 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-VS-A94Z-01 1 52704047 52704047 A - ZFYVE9 Frame_Shift_Del p.E322Sfs*68 0.32 TCGA-VS-A94Z-01 1 53364881 53364881 G A ECHDC2 Missense_Mutation p.R240W 0.22 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 1 53459257 53459258 - A SCP2 Intron 0.24 TCGA-VS-A94Z-01 1 55282758 55282758 C T C1orf177 Missense_Mutation p.R383C 0.26 deleterious(0) probably_damaging(0.995) TCGA-VS-A94Z-01 1 62676128 62676128 C T L1TD1 Missense_Mutation p.S561L 0.19 deleterious(0) possibly_damaging(0.886) TCGA-VS-A94Z-01 1 62917361 62917362 - T USP1 3'UTR 0.19 TCGA-VS-A94Z-01 1 64680524 64680524 G C UBE2U Missense_Mutation p.E122D 0.21 tolerated(0.06) benign(0.034) TCGA-VS-A94Z-01 1 6520962 6520962 G A ESPN 3'UTR 0.30 TCGA-VS-A94Z-01 1 65323423 65323423 G T JAK1 Missense_Mutation p.S458R 0.10 tolerated(0.51) benign(0.26) TCGA-VS-A94Z-01 1 66098964 66098964 C T LEPR Intron 0.18 TCGA-VS-A94Z-01 1 68171142 68171142 T C GNG12 Missense_Mutation p.I71V 0.09 tolerated(0.14) benign(0.005) TCGA-VS-A94Z-01 1 68603587 68603587 G A WLS Silent p.G462G 0.43 TCGA-VS-A94Z-01 1 77094396 77094396 G - ST6GALNAC3 Frame_Shift_Del p.G276Vfs*20 0.24 TCGA-VS-A94Z-01 1 78428461 78428461 C G FUBP1 Missense_Mutation p.K446N 0.23 deleterious(0) probably_damaging(0.987) TCGA-VS-A94Z-01 1 79392774 79392774 T C ELTD1 Missense_Mutation p.N294D 0.13 tolerated(0.39) benign(0.099) TCGA-VS-A94Z-01 1 8385912 8385912 C A SLC45A1 Silent p.G175G 0.10 TCGA-VS-A94Z-01 1 86921114 86921114 G C CLCA2 Missense_Mutation p.L912F 0.27 tolerated(0.13) benign(0.037) TCGA-VS-A94Z-01 1 94027661 94027661 G A BCAR3 3'UTR 0.17 TCGA-VS-A94Z-01 1 94343312 94343312 C A DNTTIP2 Missense_Mutation p.R60I 0.09 tolerated(0.06) benign(0.01) TCGA-VS-A94Z-01 1 94650977 94650978 - TG ARHGAP29 Frame_Shift_Ins p.K614Tfs*6 0.21 TCGA-VS-A94Z-01 1 97187336 97187336 C - PTBP2 5'Flank 0.15 TCGA-VS-A94Z-01 1 976894 976894 G T AGRN Missense_Mutation p.S330I 0.30 tolerated(0.54) benign(0.403) TCGA-VS-A94Z-01 1 9795197 9795197 G - CLSTN1 Frame_Shift_Del p.P640Rfs*2 0.19 TCGA-VS-A94Z-01 20 13845888 13845888 C T SEL1L2 Splice_Site p.X469_splice 0.18 TCGA-VS-A94Z-01 20 18143468 18143468 C T CSRP2BP Missense_Mutation p.A517V 0.33 tolerated(0.14) benign(0.017) TCGA-VS-A94Z-01 20 22562579 22562579 G A FOXA2 Missense_Mutation p.T434M 0.12 deleterious(0.04) possibly_damaging(0.877) TCGA-VS-A94Z-01 20 23966359 23966359 C A GGTLC1 Missense_Mutation p.R159L 0.09 deleterious(0) probably_damaging(0.961) TCGA-VS-A94Z-01 20 2442545 2442545 G A SNRPB Intron 0.33 TCGA-VS-A94Z-01 20 31455397 31455397 C A EFCAB8 Missense_Mutation p.P18T 0.12 TCGA-VS-A94Z-01 20 33299445 33299445 C G TP53INP2 3'UTR 0.33 TCGA-VS-A94Z-01 20 33299658 33299658 C G TP53INP2 3'UTR 0.30 TCGA-VS-A94Z-01 20 33299680 33299680 C T TP53INP2 3'UTR 0.27 TCGA-VS-A94Z-01 20 33299988 33299988 C G TP53INP2 3'UTR 0.31 TCGA-VS-A94Z-01 20 33590728 33590728 G A TRPC4AP 3'UTR 0.17 TCGA-VS-A94Z-01 20 33875529 33875529 G C FAM83C Missense_Mutation p.I351M 0.27 deleterious(0.01) possibly_damaging(0.703) TCGA-VS-A94Z-01 20 34287353 34287353 G A ROMO1 5'UTR 0.17 TCGA-VS-A94Z-01 20 40701776 40701776 C G PTPRT 3'UTR 0.13 TCGA-VS-A94Z-01 20 4229111 4229111 C T ADRA1D Missense_Mutation p.G165D 0.20 deleterious(0) probably_damaging(0.998) TCGA-VS-A94Z-01 20 48524769 48524769 C T SPATA2 Missense_Mutation p.G87S 0.25 tolerated(0.6) benign(0.002) TCGA-VS-A94Z-01 20 49509883 49509883 A - ADNP Frame_Shift_Del p.P457Lfs*21 0.13 TCGA-VS-A94Z-01 20 50049009 50049009 C T NFATC2 Missense_Mutation p.A773T 0.11 tolerated(0.73) benign(0.002) TCGA-VS-A94Z-01 20 54572862 54572862 G C CBLN4 3'UTR 0.09 TCGA-VS-A94Z-01 20 60889779 60889779 G C LAMA5 Silent p.V2733V 0.27 TCGA-VS-A94Z-01 20 60920929 60920929 C T LAMA5 Silent p.T474T 0.13 TCGA-VS-A94Z-01 20 61513041 61513041 C G DIDO1 Missense_Mutation p.E1423Q 0.24 possibly_damaging(0.894) TCGA-VS-A94Z-01 20 62199016 62199016 G - HELZ2 Intron 0.28 TCGA-VS-A94Z-01 20 62292738 62292738 C T RTEL1 Nonsense_Mutation p.R64* 0.31 TCGA-VS-A94Z-01 21 18924256 18924256 C T CXADR Missense_Mutation p.H134Y 0.24 tolerated(0.18) benign(0.198) TCGA-VS-A94Z-01 21 31964790 31964790 G A KRTAP6-3 Missense_Mutation p.C2Y 0.12 unknown(0) TCGA-VS-A94Z-01 21 34110543 34110543 T C PAXBP1 Missense_Mutation p.I808V 0.13 deleterious(0.01) possibly_damaging(0.903) TCGA-VS-A94Z-01 21 39671533 39671533 C T KCNJ15 Missense_Mutation p.A117V 0.24 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 21 40781908 40781908 C T LCA5L Missense_Mutation p.E427K 0.26 tolerated(0.16) benign(0.023) TCGA-VS-A94Z-01 21 40782236 40782236 C G LCA5L Missense_Mutation p.R373T 0.23 tolerated(0.11) benign(0.027) TCGA-VS-A94Z-01 21 46910201 46910201 G A COL18A1 Missense_Mutation p.A838T 0.20 probably_damaging(0.938) TCGA-VS-A94Z-01 21 46913116 46913116 G A COL18A1 Missense_Mutation p.E932K 0.09 possibly_damaging(0.508) TCGA-VS-A94Z-01 21 47977594 47977594 C T DIP2A Silent p.R1242R 0.31 TCGA-VS-A94Z-01 22 17446135 17446135 T C GAB4 Missense_Mutation p.R438G 0.13 deleterious(0) benign(0.009) TCGA-VS-A94Z-01 22 18111385 18111385 G A ATP6V1E1 Missense_Mutation p.A6V 0.11 tolerated(0.22) benign(0.003) TCGA-VS-A94Z-01 22 22057747 22057747 G T YPEL1 Missense_Mutation p.P61H 0.20 deleterious(0.01) possibly_damaging(0.717) TCGA-VS-A94Z-01 22 22287947 22287947 G T PPM1F Missense_Mutation p.P188H 0.24 tolerated(0.11) possibly_damaging(0.726) TCGA-VS-A94Z-01 22 24237116 24237116 G C MIF Missense_Mutation p.R89P 0.22 tolerated(0.21) benign(0.174) TCGA-VS-A94Z-01 22 28196415 28196415 G C MN1 Missense_Mutation p.F39L 0.32 probably_damaging(0.953) TCGA-VS-A94Z-01 22 29130585 29130585 G C CHEK2 Missense_Mutation p.S42C 0.33 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-VS-A94Z-01 22 30057264 30057264 G A NF2 Missense_Mutation p.R249K 0.23 tolerated(1) benign(0.006) TCGA-VS-A94Z-01 22 31013398 31013398 C T TCN2 Missense_Mutation p.P341L 0.05 deleterious(0.04) benign(0.001) TCGA-VS-A94Z-01 22 31333827 31333827 C T MORC2 Silent p.A386A 0.16 TCGA-VS-A94Z-01 22 31864248 31864249 AG - EIF4ENIF1 Frame_Shift_Del p.Y71Pfs*38 0.17 TCGA-VS-A94Z-01 22 32081539 32081539 C G PRR14L Missense_Mutation p.E2144Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-VS-A94Z-01 22 33669168 33669168 C G LARGE 3'UTR 0.12 TCGA-VS-A94Z-01 22 35689780 35689780 A G HMGXB4 3'UTR 0.09 TCGA-VS-A94Z-01 22 38073038 38073038 C G LGALS1 Missense_Mutation p.R19G 0.20 tolerated(0.23) benign(0.029) TCGA-VS-A94Z-01 22 38369997 38369997 C T SOX10 Silent p.P302P 0.08 TCGA-VS-A94Z-01 22 39448311 39448311 G A APOBEC3F Missense_Mutation p.R319H 0.23 tolerated(0.05) probably_damaging(0.967) TCGA-VS-A94Z-01 22 39822793 39822793 G A TAB1 Missense_Mutation p.R336H 0.39 deleterious(0) probably_damaging(0.993) TCGA-VS-A94Z-01 22 39911167 39911167 A T MIEF1 3'UTR 0.14 TCGA-VS-A94Z-01 22 40719570 40719570 T A TNRC6B 3'UTR 0.21 TCGA-VS-A94Z-01 22 41609892 41609892 C T L3MBTL2 Intron 0.09 TCGA-VS-A94Z-01 22 43533296 43533296 C T MCAT Missense_Mutation p.A174T 0.15 tolerated(0.09) probably_damaging(0.91) TCGA-VS-A94Z-01 22 43563522 43563522 G A TTLL12 3'UTR 0.50 TCGA-VS-A94Z-01 22 50832405 50832405 C T PPP6R2 Missense_Mutation p.T23M 0.20 deleterious(0) probably_damaging(0.998) TCGA-VS-A94Z-01 22 50885383 50885383 G C SBF1 3'UTR 0.19 TCGA-VS-A94Z-01 22 50962041 50962041 C G SCO2 Nonstop_Mutation p.*267Sext*? 0.29 TCGA-VS-A94Z-01 2 101031537 101031537 G T CHST10 5'UTR 0.10 TCGA-VS-A94Z-01 2 10188421 10188421 T G KLF11 Silent p.A319A 0.13 TCGA-VS-A94Z-01 2 106498429 106498429 C T NCK2 Missense_Mutation p.T291M 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 2 113300063 113300063 G A POLR1B 5'UTR 0.17 TCGA-VS-A94Z-01 2 114257061 114257061 C T FOXD4L1 Silent p.G76G 0.15 TCGA-VS-A94Z-01 2 116594126 116594126 A T DPP10 Missense_Mutation p.E702D 0.09 tolerated(0.97) benign(0.012) TCGA-VS-A94Z-01 2 11696702 11696702 G A GREB1 5'UTR 0.30 TCGA-VS-A94Z-01 2 128184716 128184716 C T PROC Silent p.C238C 0.15 TCGA-VS-A94Z-01 2 130739725 130739725 T A RAB6C 3'UTR 0.16 TCGA-VS-A94Z-01 2 131672113 131672113 G - ARHGEF4 5'Flank 0.11 TCGA-VS-A94Z-01 2 135170579 135170579 T C MGAT5 Missense_Mutation p.L557P 0.22 tolerated(0.22) probably_damaging(0.977) TCGA-VS-A94Z-01 2 136873790 136873790 G T CXCR4 5'UTR 0.16 TCGA-VS-A94Z-01 2 153004608 153004608 C T STAM2 Missense_Mutation p.G77E 0.21 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 2 165548750 165548750 G A COBLL1 Missense_Mutation p.A1132V 0.11 deleterious(0) probably_damaging(0.96) TCGA-VS-A94Z-01 2 169313099 169313099 T C CERS6 Silent p.C47C 0.24 TCGA-VS-A94Z-01 2 170034510 170034510 C T LRP2 Missense_Mutation p.R3399Q 0.17 probably_damaging(1) TCGA-VS-A94Z-01 2 170059334 170059334 G A LRP2 Missense_Mutation p.S2714L 0.25 benign(0.005) TCGA-VS-A94Z-01 2 170428204 170428204 C T FASTKD1 Missense_Mutation p.M112I 0.13 deleterious(0) benign(0.123) TCGA-VS-A94Z-01 2 170428395 170428395 C T FASTKD1 Missense_Mutation p.E49K 0.32 deleterious(0.03) possibly_damaging(0.804) TCGA-VS-A94Z-01 2 170462602 170462602 C G PPIG Missense_Mutation p.L64V 0.19 tolerated(0.17) benign(0.029) TCGA-VS-A94Z-01 2 174062830 174062830 A - MLTK Frame_Shift_Del p.N222Tfs*4 0.22 TCGA-VS-A94Z-01 2 176973871 176973871 G A HOXD11 3'UTR 0.42 TCGA-VS-A94Z-01 2 178977543 178977543 C T RBM45 Silent p.C90C 0.13 TCGA-VS-A94Z-01 2 179399863 179399863 G A TTN Missense_Mutation p.R33827C 0.31 TCGA-VS-A94Z-01 2 179411104 179411104 C A TTN Nonsense_Mutation p.G31652* 0.19 TCGA-VS-A94Z-01 2 179426643 179426643 T C TTN Missense_Mutation p.I28072M 0.16 TCGA-VS-A94Z-01 2 179426927 179426927 C A TTN Nonsense_Mutation p.E27978* 0.15 TCGA-VS-A94Z-01 2 179598197 179598197 C A TTN Nonsense_Mutation p.G5275* 0.14 TCGA-VS-A94Z-01 2 179912095 179912095 C A CCDC141 Missense_Mutation p.Q47H 0.17 tolerated(0.29) benign(0.117) TCGA-VS-A94Z-01 2 182322416 182322416 G A ITGA4 Missense_Mutation p.R12Q 0.20 tolerated(0.22) benign(0.014) TCGA-VS-A94Z-01 2 182374526 182374526 A - ITGA4 Frame_Shift_Del p.T615Qfs*2 0.11 TCGA-VS-A94Z-01 2 189856232 189856232 G A COL3A1 Missense_Mutation p.G291D 0.12 unknown(0) TCGA-VS-A94Z-01 2 192267378 192267378 C T MYO1B Silent p.R830R 0.10 TCGA-VS-A94Z-01 2 1926269 1926269 G A MYT1L Silent p.F424F 0.17 TCGA-VS-A94Z-01 2 196720621 196720621 C A DNAH7 Missense_Mutation p.A2837S 0.28 tolerated(0.16) benign(0.008) TCGA-VS-A94Z-01 2 197511064 197511064 G T CCDC150 Splice_Site p.X5_splice 0.18 TCGA-VS-A94Z-01 2 198268345 198268345 G A SF3B1 Silent p.Y561Y 0.17 TCGA-VS-A94Z-01 2 202545629 202545629 C T MPP4 Nonsense_Mutation p.W287* 0.22 TCGA-VS-A94Z-01 2 204341806 204341806 A G RAPH1 Intron 0.20 TCGA-VS-A94Z-01 2 204732725 204732725 G A CTLA4 Nonsense_Mutation p.W20* 0.16 TCGA-VS-A94Z-01 2 209169721 209169721 C T PIKFYVE Silent p.H540H 0.10 TCGA-VS-A94Z-01 2 21232903 21232903 C T APOB Silent p.Q2279Q 0.19 TCGA-VS-A94Z-01 2 215819991 215819992 - A ABCA12 Frame_Shift_Ins p.G2110Wfs*3 0.15 TCGA-VS-A94Z-01 2 216190855 216190855 C A ATIC Silent p.A175A 0.13 TCGA-VS-A94Z-01 2 219256127 219256127 C A SLC11A1 Missense_Mutation p.P358H 0.12 tolerated(0.09) benign(0.014) TCGA-VS-A94Z-01 2 219826600 219826600 G A CDK5R2 3'UTR 0.11 TCGA-VS-A94Z-01 2 231037606 231037606 G A SP110 Nonsense_Mutation p.R554* 0.14 TCGA-VS-A94Z-01 2 238296564 238296564 C T COL6A3 Missense_Mutation p.A325T 0.13 probably_damaging(0.99) TCGA-VS-A94Z-01 2 239180029 239180029 C T PER2 Silent p.A232A 0.30 TCGA-VS-A94Z-01 2 239975181 239975181 C T HDAC4 Missense_Mutation p.V1064M 0.24 tolerated(0.07) benign(0.097) TCGA-VS-A94Z-01 2 242155560 242155560 G A ANO7 Missense_Mutation p.A681T 0.26 tolerated(0.54) benign(0.038) TCGA-VS-A94Z-01 2 24426019 24426019 G A ITSN2 3'UTR 0.28 TCGA-VS-A94Z-01 2 27425691 27425691 G T SLC5A6 Missense_Mutation p.P422H 0.11 deleterious(0.04) possibly_damaging(0.778) TCGA-VS-A94Z-01 2 27676381 27676381 C A IFT172 Splice_Site p.X1274_splice 0.21 TCGA-VS-A94Z-01 2 27677488 27677488 G C IFT172 Silent p.L1137L 0.15 TCGA-VS-A94Z-01 2 27682634 27682634 C - IFT172 Frame_Shift_Del p.D862Tfs*42 0.25 TCGA-VS-A94Z-01 2 29543728 29543728 A - ALK Frame_Shift_Del p.Y479Tfs*28 0.29 TCGA-VS-A94Z-01 2 30959422 30959422 G A CAPN13 Missense_Mutation p.R557W 0.15 deleterious(0.03) benign(0.026) TCGA-VS-A94Z-01 2 32768593 32768593 G C BIRC6 Missense_Mutation p.D4193H 0.17 possibly_damaging(0.864) TCGA-VS-A94Z-01 2 33764181 33764181 G A RASGRP3 Silent p.T394T 0.22 TCGA-VS-A94Z-01 2 33808973 33808973 A - FAM98A 3'UTR 0.19 TCGA-VS-A94Z-01 2 44126678 44126678 T G LRPPRC Missense_Mutation p.E1212D 0.12 tolerated(1) benign(0.002) TCGA-VS-A94Z-01 2 44548523 44548523 T C PREPL Missense_Mutation p.E719G 0.20 deleterious_low_confidence(0.01) benign(0.092) TCGA-VS-A94Z-01 2 54893215 54893215 T A SPTBN1 Missense_Mutation p.F2275I 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-VS-A94Z-01 2 55464447 55464447 C T MTIF2 Missense_Mutation p.R663H 0.12 deleterious(0.01) benign(0.028) TCGA-VS-A94Z-01 2 66665034 66665034 G A MEIS1 Missense_Mutation p.A60T 0.15 tolerated(0.18) benign(0.002) TCGA-VS-A94Z-01 2 669382 669382 G A TMEM18 3'UTR 0.29 TCGA-VS-A94Z-01 2 69408939 69408939 C T ANTXR1 Missense_Mutation p.P371S 0.16 deleterious(0.03) probably_damaging(1) TCGA-VS-A94Z-01 2 71212296 71212296 C T ANKRD53 Missense_Mutation p.H487Y 0.17 tolerated(0.25) benign(0.064) TCGA-VS-A94Z-01 2 71415603 71415603 C T PAIP2B 3'UTR 0.18 TCGA-VS-A94Z-01 2 73285676 73285676 C T SFXN5 Missense_Mutation p.R51H 0.24 deleterious(0) probably_damaging(0.956) TCGA-VS-A94Z-01 2 73453947 73453947 T C SMYD5 3'UTR 0.17 TCGA-VS-A94Z-01 2 73613240 73613240 G T ALMS1 Missense_Mutation p.A82S 0.13 possibly_damaging(0.852) TCGA-VS-A94Z-01 2 74653395 74653395 C T RTKN Missense_Mutation p.R556H 0.40 tolerated_low_confidence(0.44) benign(0) TCGA-VS-A94Z-01 2 75923415 75923415 G A GCFC2 Silent p.G248G 0.13 TCGA-VS-A94Z-01 2 77749236 77749236 T C LRRTM4 Intron 0.21 TCGA-VS-A94Z-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.23 TCGA-VS-A94Z-01 2 84660507 84660507 C T SUCLG1 Silent p.T214T 0.10 TCGA-VS-A94Z-01 2 84756113 84756113 C T DNAH6 Missense_Mutation p.T162I 0.32 tolerated_low_confidence(0.12) benign(0.001) TCGA-VS-A94Z-01 2 86271343 86271343 C - POLR1A Frame_Shift_Del p.Y1019Mfs*28 0.19 TCGA-VS-A94Z-01 2 88474177 88474177 C T THNSL2 Silent p.F81F 0.20 TCGA-VS-A94Z-01 2 89103910 89103910 A T ANKRD36BP2 RNA 0.20 TCGA-VS-A94Z-01 2 95719166 95719166 C T MAL Missense_Mutation p.A143V 0.10 tolerated(0.05) benign(0.343) TCGA-VS-A94Z-01 2 96260134 96260134 C T TRIM43 Silent p.H121H 0.29 TCGA-VS-A94Z-01 2 9629763 9629763 C T IAH1 3'Flank 0.28 TCGA-VS-A94Z-01 2 96523111 96523111 C T ANKRD36C Silent p.P369P 0.15 TCGA-VS-A94Z-01 2 96850802 96850802 C T STARD7 3'UTR 0.25 TCGA-VS-A94Z-01 2 96993947 96993947 C T ITPRIPL1 Silent p.P534P 0.22 TCGA-VS-A94Z-01 3 105295334 105295334 G A ALCAM 3'UTR 0.19 TCGA-VS-A94Z-01 3 109129034 109129034 C T RP11-702L6.4 RNA 0.19 TCGA-VS-A94Z-01 3 120115493 120115493 C G FSTL1 3'UTR 0.19 TCGA-VS-A94Z-01 3 121573629 121573629 G A EAF2 Silent p.R99R 0.14 TCGA-VS-A94Z-01 3 122134540 122134540 G A WDR5B 5'UTR 0.29 TCGA-VS-A94Z-01 3 122296617 122296617 C T PARP15 Nonsense_Mutation p.R35* 0.12 TCGA-VS-A94Z-01 3 123213516 123213516 C T PTPLB 3'UTR 0.10 TCGA-VS-A94Z-01 3 124592310 124592310 C T ITGB5 Missense_Mutation p.A47T 0.09 deleterious(0) probably_damaging(0.928) TCGA-VS-A94Z-01 3 124951312 124951312 C T ZNF148 Missense_Mutation p.G753E 0.23 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 3 126737202 126737202 G A PLXNA1 Silent p.T1242T 0.11 TCGA-VS-A94Z-01 3 129156690 129156690 C T MBD4 Missense_Mutation p.A70T 0.11 deleterious(0.04) benign(0.072) TCGA-VS-A94Z-01 3 130293113 130293113 G C COL6A6 Missense_Mutation p.R1097S 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A94Z-01 3 130962297 130962297 G A NEK11 Silent p.A526A 0.07 TCGA-VS-A94Z-01 3 1339622 1339622 T C CNTN6 Silent p.T236T 0.33 TCGA-VS-A94Z-01 3 140407191 140407191 G A TRIM42 Missense_Mutation p.C556Y 0.12 tolerated(1) benign(0) TCGA-VS-A94Z-01 3 141167282 141167283 - T ZBTB38 3'UTR 0.16 TCGA-VS-A94Z-01 3 142524890 142524890 A - TRPC1 Frame_Shift_Del p.V734* 0.12 TCGA-VS-A94Z-01 3 142524945 142524945 G T TRPC1 Missense_Mutation p.M750I 0.12 tolerated(0.17) possibly_damaging(0.675) TCGA-VS-A94Z-01 3 148768046 148768046 C T HLTF Silent p.T530T 0.08 TCGA-VS-A94Z-01 3 15296800 15296800 G A SH3BP5 3'UTR 0.09 TCGA-VS-A94Z-01 3 154147004 154147004 A G GPR149 Missense_Mutation p.M134T 0.13 tolerated(0.58) benign(0.069) TCGA-VS-A94Z-01 3 156261018 156261018 C T SSR3 Missense_Mutation p.A178T 0.11 deleterious(0.02) possibly_damaging(0.488) TCGA-VS-A94Z-01 3 156866005 156866005 G A CCNL1 3'UTR 0.20 TCGA-VS-A94Z-01 3 156979023 156979023 G A VEPH1 Missense_Mutation p.A801V 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 3 157820642 157820642 G A SHOX2 Missense_Mutation p.A151V 0.18 tolerated(0.53) benign(0.04) TCGA-VS-A94Z-01 3 161063068 161063068 T C SPTSSB 3'UTR 0.14 TCGA-VS-A94Z-01 3 167747794 167747794 A G GOLIM4 Missense_Mutation p.F403L 0.12 tolerated(0.57) benign(0.005) TCGA-VS-A94Z-01 3 170819367 170819367 C T TNIK Missense_Mutation p.R821H 0.07 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-VS-A94Z-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.17 deleterious(0.02) probably_damaging(0.959) TCGA-VS-A94Z-01 3 179115515 179115515 C T MFN1 3'Flank 0.16 TCGA-VS-A94Z-01 3 179399692 179399692 C T USP13 Silent p.C65C 0.07 TCGA-VS-A94Z-01 3 180652986 180652986 A - FXR1 Frame_Shift_Del p.E58Kfs*8 0.16 TCGA-VS-A94Z-01 3 183515770 183515770 A C YEATS2 Missense_Mutation p.S1053R 0.19 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-VS-A94Z-01 3 183660607 183660607 C A ABCC5 Missense_Mutation p.R1201M 0.06 deleterious(0) probably_damaging(0.968) TCGA-VS-A94Z-01 3 185649481 185649481 T G TRA2B Intron 0.34 TCGA-VS-A94Z-01 3 186760655 186760655 C T ST6GAL1 Missense_Mutation p.A55V 0.10 benign(0.006) TCGA-VS-A94Z-01 3 192516621 192516621 G A MB21D2 Missense_Mutation p.P344S 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-VS-A94Z-01 3 195778941 195778941 G A TFRC Missense_Mutation p.R719C 0.14 tolerated(0.14) probably_damaging(0.973) TCGA-VS-A94Z-01 3 197598313 197598313 C T LRCH3 Missense_Mutation p.H704Y 0.17 deleterious(0) probably_damaging(0.991) TCGA-VS-A94Z-01 3 197602610 197602610 T A LRCH3 3'Flank 0.07 TCGA-VS-A94Z-01 3 22424366 22424366 G T HMGB1P5 RNA 0.35 TCGA-VS-A94Z-01 3 37033562 37033562 C T EPM2AIP1 Missense_Mutation p.R336Q 0.17 tolerated(0.26) possibly_damaging(0.86) TCGA-VS-A94Z-01 3 37089136 37089136 G T MLH1 Nonsense_Mutation p.E620* 0.29 TCGA-VS-A94Z-01 3 38768320 38768320 C T SCN10A Missense_Mutation p.S955N 0.25 tolerated(0.72) benign(0.008) TCGA-VS-A94Z-01 3 42264607 42264607 G A TRAK1 Missense_Mutation p.R747Q 0.27 tolerated(0.15) benign(0.026) TCGA-VS-A94Z-01 3 43074538 43074538 G A FAM198A Silent p.L261L 0.24 TCGA-VS-A94Z-01 3 4403038 4403038 G A SUMF1 3'UTR 0.20 TCGA-VS-A94Z-01 3 47883211 47883211 C T DHX30 Missense_Mutation p.S258L 0.18 deleterious(0) benign(0.169) TCGA-VS-A94Z-01 3 49698198 49698198 G A BSN Missense_Mutation p.A2974T 0.22 unknown(0) TCGA-VS-A94Z-01 3 49737173 49737173 G T RNF123 Missense_Mutation p.A318S 0.32 tolerated(0.28) benign(0.188) TCGA-VS-A94Z-01 3 51671182 51671182 G C RAD54L2 Missense_Mutation p.E449Q 0.42 tolerated(0.18) benign(0.16) TCGA-VS-A94Z-01 3 51979583 51979583 C T PARP3 Missense_Mutation p.P319S 0.21 deleterious(0.01) possibly_damaging(0.807) TCGA-VS-A94Z-01 3 52837878 52837878 G A ITIH3 Missense_Mutation p.A573T 0.12 tolerated(0.07) benign(0.04) TCGA-VS-A94Z-01 3 57547152 57547153 - AT PDE12 3'UTR 0.29 TCGA-VS-A94Z-01 3 62359102 62359102 A T FEZF2 5'UTR 0.39 TCGA-VS-A94Z-01 3 78647243 78647243 C G ROBO1 3'UTR 0.38 TCGA-VS-A94Z-01 3 78706301 78706301 G A ROBO1 Missense_Mutation p.A854V 0.09 deleterious(0) probably_damaging(0.992) TCGA-VS-A94Z-01 3 8787784 8787784 G A CAV3 3'UTR 0.47 TCGA-VS-A94Z-01 4 104061215 104061216 - T CENPE Frame_Shift_Ins p.E1979Rfs*6 0.18 TCGA-VS-A94Z-01 4 122738083 122738083 T - CCNA2 3'UTR 0.15 TCGA-VS-A94Z-01 4 122789147 122789148 CT - BBS7 Frame_Shift_Del p.R30Sfs*11 0.18 TCGA-VS-A94Z-01 4 123195539 123195539 C T KIAA1109 Missense_Mutation p.H2830Y 0.23 possibly_damaging(0.696) TCGA-VS-A94Z-01 4 128814566 128814566 C T PLK4 Missense_Mutation p.A772V 0.21 tolerated(0.21) benign(0.065) TCGA-VS-A94Z-01 4 129042991 129042991 C G LARP1B Missense_Mutation p.S391C 0.24 deleterious(0.03) possibly_damaging(0.566) TCGA-VS-A94Z-01 4 139104416 139104416 G A SLC7A11 Missense_Mutation p.P320L 0.20 deleterious(0.01) probably_damaging(1) TCGA-VS-A94Z-01 4 140638227 140638227 G A MAML3 3'UTR 0.18 TCGA-VS-A94Z-01 4 140641173 140641173 C A MAML3 Missense_Mutation p.Q907H 0.13 possibly_damaging(0.806) TCGA-VS-A94Z-01 4 146461063 146461063 G A SMAD1 Missense_Mutation p.A170T 0.17 tolerated(0.74) benign(0.21) TCGA-VS-A94Z-01 4 148993141 148993141 C T ARHGAP10 Intron 0.28 TCGA-VS-A94Z-01 4 154523860 154523860 C T KIAA0922 Missense_Mutation p.L874F 0.20 deleterious(0) probably_damaging(0.994) TCGA-VS-A94Z-01 4 170315644 170315644 A - NEK1 3'UTR 0.11 TCGA-VS-A94Z-01 4 185683574 185683574 C T ACSL1 Missense_Mutation p.G542E 0.19 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 4 186381225 186381225 C T CCDC110 Silent p.L172L 0.42 TCGA-VS-A94Z-01 4 1957028 1957028 G A WHSC1 Missense_Mutation p.A827T 0.25 tolerated(0.21) benign(0.003) TCGA-VS-A94Z-01 4 26431538 26431538 G T RBPJ Nonsense_Mutation p.E316* 0.15 TCGA-VS-A94Z-01 4 3189496 3189496 C T HTT Missense_Mutation p.P1703L 0.29 probably_damaging(0.957) TCGA-VS-A94Z-01 4 3769653 3769653 C A ADRA2C Missense_Mutation p.F440L 0.28 deleterious(0) probably_damaging(0.969) TCGA-VS-A94Z-01 4 38134750 38134750 G C TBC1D1 Missense_Mutation p.E1060Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 4 38698963 38698963 T - KLF3 3'UTR 0.13 TCGA-VS-A94Z-01 4 39322985 39322985 C A RFC1 Missense_Mutation p.D244Y 0.19 deleterious(0) benign(0.013) TCGA-VS-A94Z-01 4 40339267 40339267 G A CHRNA9 Missense_Mutation p.R84H 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A94Z-01 4 514945 514945 C T PIGG Silent p.G405G 0.23 TCGA-VS-A94Z-01 4 55592048 55592048 G C KIT Missense_Mutation p.D458H 0.40 deleterious(0.01) possibly_damaging(0.515) TCGA-VS-A94Z-01 4 57845147 57845147 G A POLR2B 5'UTR 0.18 TCGA-VS-A94Z-01 4 6325278 6325278 G A PPP2R2C Silent p.F365F 0.15 TCGA-VS-A94Z-01 4 70070322 70070322 C T UGT2B11 Missense_Mutation p.G379D 0.13 deleterious(0) probably_damaging(0.995) TCGA-VS-A94Z-01 4 7677882 7677882 C T SORCS2 Missense_Mutation p.R423C 0.26 deleterious(0.01) possibly_damaging(0.586) TCGA-VS-A94Z-01 4 76805872 76805872 A G PPEF2 Silent p.G207G 0.19 TCGA-VS-A94Z-01 4 77941703 77941703 T A SEPT11 Missense_Mutation p.I278N 0.27 deleterious(0) probably_damaging(0.98) TCGA-VS-A94Z-01 4 79394648 79394648 A G FRAS1 Missense_Mutation p.M2527V 0.06 benign(0.001) TCGA-VS-A94Z-01 4 83347706 83347706 C T HNRNPDL Missense_Mutation p.D368N 0.26 tolerated(0.28) benign(0.048) TCGA-VS-A94Z-01 4 8368787 8368787 G A ACOX3 Silent p.G668G 0.12 TCGA-VS-A94Z-01 4 85639663 85639663 G C WDFY3 Missense_Mutation p.L2556V 0.19 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 4 85738623 85738623 G A WDFY3 Silent p.D603D 0.24 TCGA-VS-A94Z-01 4 87080543 87080543 G A MAPK10 Silent p.F48F 0.17 TCGA-VS-A94Z-01 4 89198309 89198309 C T PPM1K Missense_Mutation p.R176H 0.09 tolerated(0.78) benign(0) TCGA-VS-A94Z-01 4 95204378 95204378 A C SMARCAD1 Missense_Mutation p.I947L 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-VS-A94Z-01 4 95496932 95496932 G T PDLIM5 Intron 0.10 TCGA-VS-A94Z-01 4 9784330 9784330 C T DRD5 Missense_Mutation p.A226V 0.08 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 5 102519013 102519013 C T PPIP5K2 Missense_Mutation p.R1001C 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.854) TCGA-VS-A94Z-01 5 11346700 11346700 C T CTNND2 Missense_Mutation p.R471H 0.09 deleterious(0) probably_damaging(0.991) TCGA-VS-A94Z-01 5 121187889 121187889 G T FTMT Missense_Mutation p.E77D 0.12 deleterious(0.01) possibly_damaging(0.655) TCGA-VS-A94Z-01 5 122154617 122154617 G A SNX2 Missense_Mutation p.E371K 0.12 deleterious(0.01) possibly_damaging(0.881) TCGA-VS-A94Z-01 5 130771939 130771939 G A RAPGEF6 Intron 0.15 TCGA-VS-A94Z-01 5 130977819 130977819 T - FNIP1 3'Flank 0.25 TCGA-VS-A94Z-01 5 132098316 132098316 C T SEPT8 Missense_Mutation p.A186T 0.11 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 5 133915225 133915225 C T JADE2 3'UTR 0.48 TCGA-VS-A94Z-01 5 135392419 135392419 C - TGFBI Frame_Shift_Del p.T538Kfs*32 0.22 TCGA-VS-A94Z-01 5 135651420 135651420 G A TRPC7 Silent p.G276G 0.09 TCGA-VS-A94Z-01 5 13769190 13769190 A G DNAH5 Missense_Mutation p.V3259A 0.22 benign(0.418) TCGA-VS-A94Z-01 5 140176746 140176746 G A PCDHA2 Missense_Mutation p.A733T 0.23 deleterious_low_confidence(0.02) benign(0.013) TCGA-VS-A94Z-01 5 140182889 140182889 G A PCDHA3 Missense_Mutation p.A703T 0.18 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-VS-A94Z-01 5 140203464 140203464 G A PCDHA5 Missense_Mutation p.A702T 0.14 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-VS-A94Z-01 5 140263187 140263187 T C PCDHA13 Missense_Mutation p.V445A 0.23 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VS-A94Z-01 5 140595391 140595391 C T PCDHB13 Nonsense_Mutation p.Q566* 0.06 TCGA-VS-A94Z-01 5 140736726 140736726 T C PCDHGA4 Silent p.P653P 0.17 TCGA-VS-A94Z-01 5 140788466 140788466 A G PCDHGB6 Missense_Mutation p.K233E 0.22 tolerated(0.21) benign(0.158) TCGA-VS-A94Z-01 5 140794968 140794968 G A PCDHGA10 Silent p.S742S 0.07 TCGA-VS-A94Z-01 5 140891077 140891077 C A PCDHGB6 3'UTR 0.16 TCGA-VS-A94Z-01 5 141046117 141046117 C T ARAP3 Missense_Mutation p.A816T 0.15 tolerated(0.2) benign(0.004) TCGA-VS-A94Z-01 5 142586763 142586763 C - ARHGAP26 Frame_Shift_Del p.P665Rfs*135 0.19 TCGA-VS-A94Z-01 5 14693091 14693091 G A FAM105B Silent p.T331T 0.10 TCGA-VS-A94Z-01 5 14711209 14711209 A - ANKH 3'UTR 0.25 TCGA-VS-A94Z-01 5 14871722 14871722 G A ANKH 5'UTR 0.33 TCGA-VS-A94Z-01 5 156187603 156187603 G C SGCD 3'Flank 0.23 TCGA-VS-A94Z-01 5 162887692 162887692 C A HMMR 5'UTR 0.22 TCGA-VS-A94Z-01 5 162896750 162896750 A - HMMR Frame_Shift_Del p.T128Hfs*17 0.16 TCGA-VS-A94Z-01 5 167835585 167835585 C G WWC1 Missense_Mutation p.S265C 0.15 deleterious(0) probably_damaging(0.967) TCGA-VS-A94Z-01 5 175110847 175110847 G A HRH2 Missense_Mutation p.R204H 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A94Z-01 5 176023893 176023893 C T GPRIN1 Silent p.K981K 0.12 TCGA-VS-A94Z-01 5 176707747 176707747 G T NSD1 Missense_Mutation p.C1935F 0.11 deleterious(0.03) possibly_damaging(0.861) TCGA-VS-A94Z-01 5 176734790 176734790 G C MXD3 Nonsense_Mutation p.S166* 0.26 TCGA-VS-A94Z-01 5 177633807 177633807 C - HNRNPAB Frame_Shift_Del p.P152Rfs*2 0.20 TCGA-VS-A94Z-01 5 177690233 177690233 G A COL23A1 Silent p.G205G 0.15 TCGA-VS-A94Z-01 5 179663469 179663469 G A MAPK9 Missense_Mutation p.S397L 0.16 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VS-A94Z-01 5 179755338 179755338 C T GFPT2 Missense_Mutation p.E179K 0.17 deleterious(0) possibly_damaging(0.706) TCGA-VS-A94Z-01 5 180276292 180276292 C A ZFP62 Missense_Mutation p.G735W 0.21 deleterious(0.01) probably_damaging(1) TCGA-VS-A94Z-01 5 32404145 32404145 C T ZFR Missense_Mutation p.A364T 0.07 tolerated(0.96) unknown(0) TCGA-VS-A94Z-01 5 33938061 33938061 C T RXFP3 Missense_Mutation p.R406C 0.20 deleterious(0) benign(0.014) TCGA-VS-A94Z-01 5 37165736 37165736 T - C5orf42 Frame_Shift_Del p.R2480Dfs*5 0.25 TCGA-VS-A94Z-01 5 37341338 37341338 C A NUP155 Missense_Mutation p.R367M 0.21 deleterious(0) probably_damaging(0.945) TCGA-VS-A94Z-01 5 41004966 41004966 C G MROH2B Missense_Mutation p.L1307F 0.19 tolerated(0.28) benign(0.005) TCGA-VS-A94Z-01 5 52781723 52781723 C A FST Intron 0.13 TCGA-VS-A94Z-01 5 71490591 71490591 C T MAP1B Missense_Mutation p.S470L 0.29 unknown(0) TCGA-VS-A94Z-01 5 72386281 72386281 G C FCHO2 3'UTR 0.14 TCGA-VS-A94Z-01 5 72427609 72427609 T - TMEM171 3'UTR 0.28 TCGA-VS-A94Z-01 5 74062980 74062980 G T GFM2 5'UTR 0.40 TCGA-VS-A94Z-01 5 848638 848638 G A ZDHHC11 Silent p.H120H 0.39 TCGA-VS-A94Z-01 5 96108630 96108631 - A CAST 3'UTR 0.27 TCGA-VS-A94Z-01 5 96460247 96460247 C G LIX1 Missense_Mutation p.E57Q 0.24 deleterious(0) possibly_damaging(0.844) TCGA-VS-A94Z-01 6 105531036 105531036 C T LIN28B 3'UTR 0.22 TCGA-VS-A94Z-01 6 110551173 110551173 G T CDC40 Missense_Mutation p.D527Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 6 114182995 114182995 T - MARCKS 3'UTR 0.17 TCGA-VS-A94Z-01 6 116866659 116866659 G A TRAPPC3L Nonsense_Mutation p.R7* 0.07 TCGA-VS-A94Z-01 6 118791788 118791788 G A CEP85L Missense_Mutation p.S648F 0.12 tolerated(0.68) benign(0.413) TCGA-VS-A94Z-01 6 127796640 127796640 C T SOGA3 Missense_Mutation p.R844H 0.10 deleterious(0) possibly_damaging(0.891) TCGA-VS-A94Z-01 6 132030508 132030508 T C CTAGE9 Silent p.S550S 0.35 TCGA-VS-A94Z-01 6 13365248 13365248 C T GFOD1 Silent p.S300S 0.13 TCGA-VS-A94Z-01 6 135769591 135769591 G A AHI1 Missense_Mutation p.A488V 0.27 tolerated(0.49) benign(0.001) TCGA-VS-A94Z-01 6 13588582 13588583 - T SIRT5 Frame_Shift_Ins p.A48Cfs*15 0.09 TCGA-VS-A94Z-01 6 13618014 13618014 G A NOL7 Silent p.S133S 0.10 TCGA-VS-A94Z-01 6 138559714 138559714 C T KIAA1244 Silent p.L163L 0.25 TCGA-VS-A94Z-01 6 145992462 145992462 C T EPM2A Intron 0.10 TCGA-VS-A94Z-01 6 146254244 146254244 G A SHPRH Nonsense_Mutation p.R1021* 0.14 TCGA-VS-A94Z-01 6 152737856 152737856 C A SYNE1 Nonsense_Mutation p.E1906* 0.39 TCGA-VS-A94Z-01 6 159636047 159636047 G A FNDC1 Nonsense_Mutation p.W177* 0.22 TCGA-VS-A94Z-01 6 168271155 168271155 G A MLLT4 Missense_Mutation p.E131K 0.30 tolerated(0.22) probably_damaging(0.998) TCGA-VS-A94Z-01 6 168347401 168347401 G T MLLT4 Missense_Mutation p.G1118C 0.38 deleterious(0.01) probably_damaging(0.914) TCGA-VS-A94Z-01 6 170179367 170179367 C T ERMARD Missense_Mutation p.A610V 0.26 tolerated(0.3) benign(0.073) TCGA-VS-A94Z-01 6 20212611 20212611 G A MBOAT1 5'UTR 0.67 TCGA-VS-A94Z-01 6 24278353 24278353 G A DCDC2 Silent p.D282D 0.16 TCGA-VS-A94Z-01 6 25921520 25921520 T - SLC17A2 Frame_Shift_Del p.M121Cfs*7 0.38 TCGA-VS-A94Z-01 6 2623159 2623159 T C C6orf195 3'UTR 0.28 TCGA-VS-A94Z-01 6 26851247 26851247 C T GUSBP2 RNA 0.15 TCGA-VS-A94Z-01 6 27420885 27420885 C G ZNF184 Missense_Mutation p.E151D 0.22 tolerated(0.31) benign(0.001) TCGA-VS-A94Z-01 6 2779617 2779617 G A WRNIP1 Silent p.K459K 0.35 TCGA-VS-A94Z-01 6 29691561 29691561 C T HLA-F Missense_Mutation p.P64L 0.24 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-VS-A94Z-01 6 30550185 30550187 AGG - ABCF1 In_Frame_Del p.G232del 0.14 TCGA-VS-A94Z-01 6 30621048 30621048 T - DHX16 Frame_Shift_Del p.I1033* 0.13 TCGA-VS-A94Z-01 6 30878687 30878687 C T GTF2H4 Nonsense_Mutation p.Q177* 0.12 TCGA-VS-A94Z-01 6 30879237 30879237 C G GTF2H4 Silent p.L234L 0.27 TCGA-VS-A94Z-01 6 31323001 31323001 C G HLA-B Splice_Site p.X299_splice 0.33 TCGA-VS-A94Z-01 6 31627440 31627440 C T C6orf47 Silent p.Q95Q 0.09 TCGA-VS-A94Z-01 6 31701341 31701341 A G CLIC1 Splice_Site p.X128_splice 0.11 TCGA-VS-A94Z-01 6 33179767 33179767 C T RING1 Silent p.G369G 0.11 TCGA-VS-A94Z-01 6 35716457 35716457 C T ARMC12 Missense_Mutation p.S305F 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 6 35716469 35716469 C T ARMC12 Missense_Mutation p.S309F 0.24 deleterious(0.01) benign(0.183) TCGA-VS-A94Z-01 6 36683361 36683361 C T RAB44 Missense_Mutation p.A36V 0.21 tolerated(0.14) probably_damaging(0.998) TCGA-VS-A94Z-01 6 38120730 38120730 G - ZFAND3 3'UTR 0.26 TCGA-VS-A94Z-01 6 38690577 38690577 C T DNAH8 5'Flank 0.27 TCGA-VS-A94Z-01 6 38863982 38863982 T C DNAH8 Missense_Mutation p.V2757A 0.35 benign(0) TCGA-VS-A94Z-01 6 40399717 40399717 A G LRFN2 Missense_Mutation p.L379P 0.15 deleterious(0) benign(0.178) TCGA-VS-A94Z-01 6 41658409 41658409 C G TFEB Missense_Mutation p.E154Q 0.39 deleterious(0.02) possibly_damaging(0.886) TCGA-VS-A94Z-01 6 42851311 42851311 G C RPL7L1 Missense_Mutation p.L81F 0.25 deleterious(0.04) benign(0.392) TCGA-VS-A94Z-01 6 43753875 43753876 TG - VEGFA 3'Flank 0.08 TCGA-VS-A94Z-01 6 44200593 44200593 T A SLC29A1 Missense_Mutation p.V370E 0.19 deleterious(0) possibly_damaging(0.814) TCGA-VS-A94Z-01 6 49419209 49419209 G T MUT Silent p.L434L 0.21 TCGA-VS-A94Z-01 6 49808612 49808612 C G CRISP1 Missense_Mutation p.E178Q 0.21 tolerated(0.07) possibly_damaging(0.68) TCGA-VS-A94Z-01 6 56437819 56437819 G A DST Missense_Mutation p.A1804V 0.13 possibly_damaging(0.615) TCGA-VS-A94Z-01 6 66112374 66112374 C T EYS Missense_Mutation p.C394Y 0.08 deleterious(0) benign(0.202) TCGA-VS-A94Z-01 6 70992742 70992742 G A COL9A1 Intron 0.33 TCGA-VS-A94Z-01 6 71270349 71270349 C T FAM135A 3'UTR 0.23 TCGA-VS-A94Z-01 6 71566697 71566697 T C SMAP1 Missense_Mutation p.Y309H 0.30 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 6 74063858 74063858 G A DPPA5 Missense_Mutation p.R31W 0.11 tolerated(0.66) benign(0.003) TCGA-VS-A94Z-01 6 76564874 76564874 A G MYO6 Missense_Mutation p.N366S 0.10 tolerated(0.78) unknown(0) TCGA-VS-A94Z-01 6 76657093 76657093 C T IMPG1 Missense_Mutation p.R661H 0.26 tolerated(0.13) benign(0.284) TCGA-VS-A94Z-01 6 83075483 83075483 G A TPBG Missense_Mutation p.A269T 0.12 deleterious(0.04) possibly_damaging(0.728) TCGA-VS-A94Z-01 6 83866962 83866963 - T DOPEY1 Frame_Shift_Ins p.R2225Qfs*37 0.30 TCGA-VS-A94Z-01 6 96657758 96657758 C - FUT9 3'UTR 0.13 TCGA-VS-A94Z-01 6 99858837 99858837 C A PNISR Missense_Mutation p.W94L 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-VS-A94Z-01 7 101923329 101923329 G A CUX1 Missense_Mutation p.G559S 0.10 tolerated(0.69) benign(0.053) TCGA-VS-A94Z-01 7 103006572 103006572 C T PSMC2 Missense_Mutation p.A269V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A94Z-01 7 103126705 103126705 A G RELN Missense_Mutation p.Y3308H 0.10 tolerated(0.11) possibly_damaging(0.786) TCGA-VS-A94Z-01 7 108204485 108204485 T A THAP5 3'UTR 0.26 TCGA-VS-A94Z-01 7 11142336 11142336 C A PHF14 3'UTR 0.24 TCGA-VS-A94Z-01 7 121701325 121701325 A - PTPRZ1 3'UTR 0.18 TCGA-VS-A94Z-01 7 127013660 127013660 G T ZNF800 Missense_Mutation p.P577H 0.09 tolerated(0.08) benign(0.436) TCGA-VS-A94Z-01 7 127894784 127894784 C T LEP Silent p.L158L 0.12 TCGA-VS-A94Z-01 7 128035239 128035239 C T IMPDH1 Missense_Mutation p.G451S 0.24 deleterious(0) probably_damaging(0.991) TCGA-VS-A94Z-01 7 129939161 129939161 G A CPA4 Missense_Mutation p.V68I 0.09 tolerated(0.07) benign(0.091) TCGA-VS-A94Z-01 7 133502151 133502151 G A EXOC4 Missense_Mutation p.V530M 0.33 tolerated(0.28) benign(0) TCGA-VS-A94Z-01 7 13971365 13971365 G A ETV1 Silent p.R188R 0.15 TCGA-VS-A94Z-01 7 14188136 14188136 G A DGKB 3'UTR 0.30 TCGA-VS-A94Z-01 7 149491923 149491923 G T SSPO RNA 0.08 TCGA-VS-A94Z-01 7 150269721 150269721 C T GIMAP4 Missense_Mutation p.A188V 0.25 tolerated(0.89) benign(0.053) TCGA-VS-A94Z-01 7 150554245 150554245 G A AOC1 Silent p.G229G 0.09 TCGA-VS-A94Z-01 7 150649885 150649885 G T KCNH2 Silent p.I395I 0.31 TCGA-VS-A94Z-01 7 150815328 150815328 C T AGAP3 Silent p.I246I 0.26 TCGA-VS-A94Z-01 7 150933573 150933573 T C CHPF2 Missense_Mutation p.F303S 0.15 deleterious(0.01) benign(0.105) TCGA-VS-A94Z-01 7 18914189 18914189 C T HDAC9 Missense_Mutation p.P925S 0.17 tolerated(0.07) possibly_damaging(0.851) TCGA-VS-A94Z-01 7 2650000 2650000 G A IQCE 3'UTR 0.28 TCGA-VS-A94Z-01 7 27140342 27140342 T - HOXA2 3'UTR 0.18 TCGA-VS-A94Z-01 7 27202793 27202793 C A HOXA9 3'UTR 0.21 TCGA-VS-A94Z-01 7 30705225 30705225 C T CRHR2 Missense_Mutation p.A143T 0.10 tolerated(0.23) probably_damaging(0.999) TCGA-VS-A94Z-01 7 53103918 53103919 - C POM121L12 Frame_Shift_Ins p.K187Qfs*5 0.18 TCGA-VS-A94Z-01 7 5331407 5331407 G A SLC29A4 Missense_Mutation p.A167T 0.14 tolerated(0.36) benign(0.002) TCGA-VS-A94Z-01 7 57528583 57528583 A C ZNF716 Missense_Mutation p.K139T 0.07 deleterious(0.05) possibly_damaging(0.536) TCGA-VS-A94Z-01 7 6639673 6639673 G A C7orf26 Missense_Mutation p.G265D 0.21 tolerated(0.05) probably_damaging(0.969) TCGA-VS-A94Z-01 7 73256464 73256464 G A WBSCR27 Nonsense_Mutation p.Q3* 0.21 TCGA-VS-A94Z-01 7 7420473 7420473 G A COL28A1 Silent p.G742G 0.13 TCGA-VS-A94Z-01 7 75070358 75070358 G A POM121C Missense_Mutation p.P34L 0.11 tolerated(0.07) benign(0.067) TCGA-VS-A94Z-01 7 75915184 75915184 C - SRRM3 3'UTR 0.11 TCGA-VS-A94Z-01 7 82785244 82785244 G C PCLO Nonsense_Mutation p.S238* 0.16 TCGA-VS-A94Z-01 7 82785544 82785544 G C PCLO Nonsense_Mutation p.S138* 0.17 TCGA-VS-A94Z-01 7 86813723 86813725 AGA - DMTF1 In_Frame_Del p.E281del 0.13 TCGA-VS-A94Z-01 7 91794027 91794027 T C LRRD1 Missense_Mutation p.K164E 0.30 tolerated(0.14) benign(0.214) TCGA-VS-A94Z-01 7 92099692 92099692 C T ERVW-1 Missense_Mutation p.A2T 0.15 deleterious_low_confidence(0) possibly_damaging(0.494) TCGA-VS-A94Z-01 7 94293600 94293600 T C PEG10 Silent p.A244A 0.41 TCGA-VS-A94Z-01 7 94937336 94937336 A G PON1 Missense_Mutation p.S229P 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 7 95214119 95214119 G T PDK4 3'UTR 0.47 TCGA-VS-A94Z-01 7 97481614 97481614 G C ASNS Missense_Mutation p.S548C 0.16 deleterious(0) probably_damaging(0.99) TCGA-VS-A94Z-01 7 98565270 98565270 G A TRRAP Silent p.S2480S 0.12 TCGA-VS-A94Z-01 7 98609905 98609905 A C TRRAP Missense_Mutation p.N3836T 0.12 benign(0.024) TCGA-VS-A94Z-01 7 99054903 99054903 G A CPSF4 3'UTR 0.15 TCGA-VS-A94Z-01 7 99055926 99055926 G - ATP5J2 3'UTR 0.23 TCGA-VS-A94Z-01 7 99146059 99146059 G C FAM200A 5'UTR 0.32 TCGA-VS-A94Z-01 7 99668811 99668811 G A ZNF3 Silent p.S432S 0.18 TCGA-VS-A94Z-01 8 100729578 100729578 G A VPS13B Missense_Mutation p.D2237N 0.28 tolerated(0.37) possibly_damaging(0.539) TCGA-VS-A94Z-01 8 123985615 123985615 G C ZHX2 3'UTR 0.20 TCGA-VS-A94Z-01 8 124238837 124238837 G A C8orf76 Missense_Mutation p.S284L 0.09 deleterious(0) possibly_damaging(0.867) TCGA-VS-A94Z-01 8 125601867 125601867 C T MTSS1 Missense_Mutation p.A127T 0.32 tolerated(0.06) possibly_damaging(0.511) TCGA-VS-A94Z-01 8 134050776 134050776 T A SLA Missense_Mutation p.E315V 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-VS-A94Z-01 8 139610999 139610999 G - COL22A1 Frame_Shift_Del p.P1443Qfs*12 0.18 TCGA-VS-A94Z-01 8 142146809 142146809 C - DENND3 Frame_Shift_Del p.R24Efs*44 0.18 TCGA-VS-A94Z-01 8 142368032 142368032 C T GPR20 5'UTR 0.14 TCGA-VS-A94Z-01 8 143994265 143994265 C T CYP11B2 Silent p.V386V 0.17 TCGA-VS-A94Z-01 8 144103002 144103002 C T LY6E Silent p.G64G 0.09 TCGA-VS-A94Z-01 8 144358451 144358451 G A GLI4 Missense_Mutation p.R203H 0.10 deleterious(0) probably_damaging(0.981) TCGA-VS-A94Z-01 8 17156054 17156055 - A MTMR7 3'UTR 0.18 TCGA-VS-A94Z-01 8 22463333 22463333 G A CCAR2 Missense_Mutation p.R16H 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-VS-A94Z-01 8 25191696 25191696 G A DOCK5 Missense_Mutation p.A726T 0.29 deleterious(0.03) benign(0.021) TCGA-VS-A94Z-01 8 30210742 30210742 G C TUBBP1 RNA 0.35 TCGA-VS-A94Z-01 8 39007342 39007342 A T ADAM32 Silent p.G103G 0.21 TCGA-VS-A94Z-01 8 42692824 42692825 - A THAP1 3'UTR 0.20 TCGA-VS-A94Z-01 8 48955657 48955657 C A UBE2V2 Silent p.G27G 0.17 TCGA-VS-A94Z-01 8 48955685 48955685 G C UBE2V2 Missense_Mutation p.D37H 0.30 deleterious(0.01) benign(0.062) TCGA-VS-A94Z-01 8 57078905 57078905 G A PLAG1 Missense_Mutation p.A467V 0.24 tolerated(0.36) benign(0.015) TCGA-VS-A94Z-01 8 59728095 59728095 G - TOX Frame_Shift_Del p.K399Sfs*8 0.10 TCGA-VS-A94Z-01 8 65494574 65494574 C A BHLHE22 3'UTR 0.28 TCGA-VS-A94Z-01 8 67039493 67039493 A T TRIM55 5'UTR 0.28 TCGA-VS-A94Z-01 8 68113968 68113968 C T ARFGEF1 Intron 0.18 TCGA-VS-A94Z-01 8 70585128 70585128 G A SLCO5A1 Silent p.P841P 0.22 TCGA-VS-A94Z-01 8 72983997 72983997 C G TRPA1 Missense_Mutation p.E73Q 0.22 tolerated(0.58) benign(0.017) TCGA-VS-A94Z-01 8 81431499 81431499 G C ZBTB10 Missense_Mutation p.K784N 0.18 tolerated(0.08) benign(0.223) TCGA-VS-A94Z-01 8 81431706 81431706 G A ZBTB10 Silent p.Q853Q 0.20 TCGA-VS-A94Z-01 8 81553333 81553333 A - ZNF704 3'UTR 0.16 TCGA-VS-A94Z-01 8 89130945 89130945 G A MMP16 Silent p.G285G 0.24 TCGA-VS-A94Z-01 8 92982940 92982940 C T RUNX1T1 Silent p.R506R 0.15 TCGA-VS-A94Z-01 8 95412468 95412468 G A RAD54B Nonsense_Mutation p.Q390* 0.15 TCGA-VS-A94Z-01 8 98736890 98736890 G T MTDH Nonsense_Mutation p.E581* 0.20 TCGA-VS-A94Z-01 9 101052788 101052788 G A GABBR2 3'UTR 0.25 TCGA-VS-A94Z-01 9 101597592 101597592 T C GALNT12 Missense_Mutation p.S327P 0.07 deleterious(0) possibly_damaging(0.772) TCGA-VS-A94Z-01 9 106864826 106864826 G A SMC2 Missense_Mutation p.R331H 0.11 tolerated(0.48) benign(0.022) TCGA-VS-A94Z-01 9 112932512 112932512 T - PALM2-AKAP2 3'UTR 0.17 TCGA-VS-A94Z-01 9 116760596 116760596 G T ZNF618 Intron 0.10 TCGA-VS-A94Z-01 9 116854202 116854202 C T KIF12 Missense_Mutation p.R494H 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.55) TCGA-VS-A94Z-01 9 117038000 117038000 G A COL27A1 Silent p.L1223L 0.24 TCGA-VS-A94Z-01 9 117098427 117098438 GTCTTCTTTTCT TGTCTTCTTTTC AKNA 3'UTR 0.18 TCGA-VS-A94Z-01 9 117098438 117098438 T - AKNA 3'UTR 0.12 TCGA-VS-A94Z-01 9 117379467 117379467 C T C9orf91 5'UTR 0.26 TCGA-VS-A94Z-01 9 123857182 123857182 A - CNTRL Frame_Shift_Del p.K123Nfs*8 0.11 TCGA-VS-A94Z-01 9 124132532 124132532 G C STOM 5'Flank 0.24 TCGA-VS-A94Z-01 9 124544764 124544764 G A DAB2IP Intron 0.08 TCGA-VS-A94Z-01 9 124546687 124546687 C - DAB2IP 3'UTR 0.26 TCGA-VS-A94Z-01 9 124584810 124584810 G A TTLL11 3'UTR 0.11 TCGA-VS-A94Z-01 9 124989190 124989190 C T LHX6 Silent p.P92P 0.19 TCGA-VS-A94Z-01 9 125315686 125315686 C T OR1N2 Silent p.L80L 0.20 TCGA-VS-A94Z-01 9 125377263 125377263 C T OR1Q1 Nonsense_Mutation p.Q83* 0.40 TCGA-VS-A94Z-01 9 125377592 125377592 C T OR1Q1 Silent p.T192T 0.30 TCGA-VS-A94Z-01 9 125670604 125670604 A G ZBTB6 3'UTR 0.14 TCGA-VS-A94Z-01 9 125670811 125670811 T - ZBTB6 3'UTR 0.16 TCGA-VS-A94Z-01 9 130230050 130230050 A G LRSAM1 Missense_Mutation p.Y187C 0.25 deleterious(0) possibly_damaging(0.642) TCGA-VS-A94Z-01 9 130265075 130265075 G T LRSAM1 Missense_Mutation p.C690F 0.30 deleterious(0) possibly_damaging(0.853) TCGA-VS-A94Z-01 9 130269596 130269596 C T FAM129B Missense_Mutation p.G590D 0.36 deleterious(0) possibly_damaging(0.599) TCGA-VS-A94Z-01 9 130495611 130495611 G C TOR2A Intron 0.18 TCGA-VS-A94Z-01 9 130825882 130825882 C T NAIF1 Missense_Mutation p.R270H 0.14 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-VS-A94Z-01 9 131492202 131492202 C T ZER1 3'UTR 0.14 TCGA-VS-A94Z-01 9 132995334 132995334 G A NCS1 3'UTR 0.31 TCGA-VS-A94Z-01 9 133309141 133309141 C T HMCN2 3'UTR 0.08 TCGA-VS-A94Z-01 9 135804295 135804295 G A TSC1 5'UTR 0.25 TCGA-VS-A94Z-01 9 136594893 136594893 C G SARDH Silent p.G303G 0.27 TCGA-VS-A94Z-01 9 137716542 137716542 G A COL5A1 Missense_Mutation p.E1599K 0.21 unknown(0) TCGA-VS-A94Z-01 9 138376479 138376479 G A PPP1R26 Silent p.A41A 0.22 TCGA-VS-A94Z-01 9 139835410 139835410 G A FBXW5 Silent p.F557F 0.14 TCGA-VS-A94Z-01 9 140729241 140729241 C T EHMT1 Missense_Mutation p.R1245C 0.19 deleterious(0) probably_damaging(0.986) TCGA-VS-A94Z-01 9 141016245 141016245 G A CACNA1B Missense_Mutation p.A2272T 0.09 tolerated(0.68) benign(0.002) TCGA-VS-A94Z-01 9 14859271 14859271 G A FREM1 Missense_Mutation p.R181W 0.11 tolerated(0.24) benign(0) TCGA-VS-A94Z-01 9 18887911 18887911 G A ADAMTSL1 Silent p.T1444T 0.28 TCGA-VS-A94Z-01 9 21206869 21206869 G T IFNA10 Silent p.A76A 0.19 TCGA-VS-A94Z-01 9 43625124 43625125 - T SPATA31A6 Frame_Shift_Ins p.T1188Nfs*14 0.09 TCGA-VS-A94Z-01 9 77567216 77567216 T C C9orf40 Silent p.V104V 0.19 TCGA-VS-A94Z-01 9 86616858 86616858 C A RMI1 Silent p.A319A 0.15 TCGA-VS-A94Z-01 9 97209197 97209197 T - HIATL1 Frame_Shift_Del p.L277Sfs*7 0.10 TCGA-VS-A94Z-01 X 100625009 100625009 C T BTK Missense_Mutation p.R123Q 0.16 tolerated(0.62) benign(0.006) TCGA-VS-A94Z-01 X 100809117 100809117 A G ARMCX1 Missense_Mutation p.N402D 0.13 tolerated(0.6) benign(0.089) TCGA-VS-A94Z-01 X 10176104 10176104 T C CLCN4 Missense_Mutation p.L288P 0.08 deleterious(0.03) benign(0.139) TCGA-VS-A94Z-01 X 102564343 102564343 C A BEX2 3'UTR 0.19 TCGA-VS-A94Z-01 X 105153550 105153550 G C NRK Silent p.L640L 0.11 TCGA-VS-A94Z-01 X 107979602 107979602 C T IRS4 5'UTR 0.09 TCGA-VS-A94Z-01 X 108884603 108884603 C T ACSL4 3'UTR 0.10 TCGA-VS-A94Z-01 X 118718332 118718332 A - UBE2A 3'UTR 0.16 TCGA-VS-A94Z-01 X 119005485 119005485 C T RNF113A Missense_Mutation p.R31K 0.28 tolerated(0.26) probably_damaging(0.91) TCGA-VS-A94Z-01 X 120182043 120182043 A G GLUD2 Missense_Mutation p.T169A 0.13 deleterious(0.02) possibly_damaging(0.58) TCGA-VS-A94Z-01 X 12157067 12157067 G A FRMPD4 5'UTR 0.13 TCGA-VS-A94Z-01 X 123182912 123182912 T C STAG2 Missense_Mutation p.F293L 0.16 deleterious(0) probably_damaging(0.996) TCGA-VS-A94Z-01 X 129201033 129201033 G A ELF4 Missense_Mutation p.T552M 0.11 deleterious(0) probably_damaging(0.997) TCGA-VS-A94Z-01 X 129630041 129630041 A - RP1-274L7.1 Intron 0.11 TCGA-VS-A94Z-01 X 129769033 129769033 C G ENOX2 Missense_Mutation p.K477N 0.13 tolerated(0.72) benign(0.103) TCGA-VS-A94Z-01 X 133562748 133562748 T C PHF6 3'UTR 0.10 TCGA-VS-A94Z-01 X 135314085 135314085 T C MAP7D3 Missense_Mutation p.D344G 0.11 deleterious(0.01) benign(0.091) TCGA-VS-A94Z-01 X 140993975 140993975 G A MAGEC1 Missense_Mutation p.G262D 0.09 deleterious_low_confidence(0) unknown(0) TCGA-VS-A94Z-01 X 144910424 144910424 G A TMEM257 3'UTR 0.12 TCGA-VS-A94Z-01 X 148076591 148076591 T C AFF2 3'UTR 0.11 TCGA-VS-A94Z-01 X 149787604 149787604 C T MTM1 Missense_Mutation p.H146Y 0.10 tolerated(0.19) benign(0.002) TCGA-VS-A94Z-01 X 150349779 150349779 C T GPR50 Missense_Mutation p.A575V 0.12 tolerated_low_confidence(0.3) benign(0.003) TCGA-VS-A94Z-01 X 150842575 150842575 G A PASD1 Missense_Mutation p.D698N 0.20 deleterious(0.02) possibly_damaging(0.728) TCGA-VS-A94Z-01 X 152483020 152483020 C T MAGEA1 5'UTR 0.31 TCGA-VS-A94Z-01 X 152613178 152613178 C T ZNF275 Intron 0.06 TCGA-VS-A94Z-01 X 152954131 152954131 C T SLC6A8 Silent p.G34G 0.13 TCGA-VS-A94Z-01 X 153031000 153031000 G A PLXNB3 5'UTR 0.28 TCGA-VS-A94Z-01 X 153036830 153036830 G A PLXNB3 Silent p.Q796Q 0.27 TCGA-VS-A94Z-01 X 153171848 153171848 G T AVPR2 Missense_Mutation p.W296C 0.16 deleterious(0) probably_damaging(1) TCGA-VS-A94Z-01 X 153578017 153578017 C A FLNA Missense_Mutation p.G2518C 0.25 deleterious(0) probably_damaging(0.997) TCGA-VS-A94Z-01 X 18643336 18643336 G A CDKL5 Missense_Mutation p.R822H 0.22 tolerated_low_confidence(0.21) benign(0.002) TCGA-VS-A94Z-01 X 20043156 20043156 G A MAP7D2 Missense_Mutation p.A442V 0.09 deleterious(0.03) probably_damaging(0.937) TCGA-VS-A94Z-01 X 200854 200854 G A PLCXD1 5'UTR 0.19 TCGA-VS-A94Z-01 X 23697279 23697279 C T PRDX4 Intron 0.21 TCGA-VS-A94Z-01 X 24228545 24228545 C T ZFX Silent p.C490C 0.16 TCGA-VS-A94Z-01 X 25033821 25033821 C T ARX Missense_Mutation p.E12K 0.13 deleterious(0.01) unknown(0) TCGA-VS-A94Z-01 X 2748238 2748238 T C GYG2 Splice_Site p.X3_splice 0.29 TCGA-VS-A94Z-01 X 34149857 34149857 C T FAM47A Missense_Mutation p.G180D 0.12 tolerated(0.77) probably_damaging(0.964) TCGA-VS-A94Z-01 X 47086843 47086843 G T CDK16 Silent p.G524G 0.27 TCGA-VS-A94Z-01 X 47272070 47272070 A C ZNF157 Missense_Mutation p.S200R 0.18 tolerated(0.23) benign(0.119) TCGA-VS-A94Z-01 X 47428201 47428201 C A ARAF Silent p.G387G 0.11 TCGA-VS-A94Z-01 X 48403331 48403331 A T TBC1D25 Missense_Mutation p.D103V 0.29 deleterious(0) possibly_damaging(0.905) TCGA-VS-A94Z-01 X 48751049 48751049 G - TIMM17B Frame_Shift_Del p.P211Rfs*40 0.13 TCGA-VS-A94Z-01 X 49076140 49076140 T C CACNA1F Silent p.V843V 0.07 TCGA-VS-A94Z-01 X 49773617 49773617 C T CLCN5 Intron 0.26 TCGA-VS-A94Z-01 X 50136286 50136286 C T DGKK RNA 0.09 TCGA-VS-A94Z-01 X 53105800 53105800 C T GPR173 5'UTR 0.20 TCGA-VS-A94Z-01 X 53221864 53221864 C - KDM5C 3'UTR 0.18 TCGA-VS-A94Z-01 X 53276230 53276230 G A IQSEC2 Silent p.L890L 0.27 TCGA-VS-A94Z-01 X 53602646 53602646 C T HUWE1 Missense_Mutation p.R1996H 0.12 possibly_damaging(0.729) TCGA-VS-A94Z-01 X 53627270 53627270 C G HUWE1 Splice_Site p.X991_splice 0.18 TCGA-VS-A94Z-01 X 54160411 54160411 G A FAM120C Missense_Mutation p.A562V 0.33 tolerated(0.4) benign(0.001) TCGA-VS-A94Z-01 X 57619317 57619317 G A ZXDB Missense_Mutation p.G279E 0.10 tolerated(0.13) benign(0.033) TCGA-VS-A94Z-01 X 63410125 63410125 C T AMER1 Silent p.G1014G 0.06 TCGA-VS-A94Z-01 X 68382054 68382054 C T PJA1 Missense_Mutation p.R343H 0.11 tolerated(0.15) benign(0.025) TCGA-VS-A94Z-01 X 70464705 70464705 C G ZMYM3 Missense_Mutation p.D1016H 0.09 deleterious(0.02) probably_damaging(0.921) TCGA-VS-A94Z-01 X 72224444 72224444 T A PABPC1L2B 3'UTR 0.05 TCGA-VS-A94Z-01 X 73046100 73046100 G A XIST RNA 0.18 TCGA-VS-A94Z-01 X 73956865 73956865 A - KIAA2022 3'UTR 0.27 TCGA-VS-A94Z-01 X 73958694 73958694 C T KIAA2022 3'UTR 0.26 TCGA-VS-A94Z-01 X 77369628 77369628 G T PGK1 Missense_Mutation p.G130W 0.13 deleterious(0) probably_damaging(0.999) TCGA-VS-A94Z-01 X 79932126 79932126 G A BRWD3 Silent p.L1797L 0.21 TCGA-VS-A94Z-01 X 86921587 86921587 G A KLHL4 Intron 0.24 TCGA-VS-A94Z-01 X 99662023 99662023 G T PCDH19 Missense_Mutation p.Q525K 0.14 deleterious(0.01) benign(0.256) TCGA-VS-A94Z-01 X 99924287 99924287 G A SRPX2 Missense_Mutation p.E380K 0.20 deleterious(0) probably_damaging(0.996) TCGA-VS-A950-01 10 103867366 103867366 G C LDB1 3'UTR 0.52 TCGA-VS-A950-01 10 104103867 104103867 G A GBF1 Missense_Mutation p.E75K 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-VS-A950-01 10 104574906 104574906 C T WBP1L 3'UTR 0.16 TCGA-VS-A950-01 10 121335287 121335287 C A TIAL1 Missense_Mutation p.A357S 0.31 tolerated(0.08) benign(0.084) TCGA-VS-A950-01 10 124708315 124708315 C T C10orf88 Missense_Mutation p.M166I 0.27 deleterious(0.03) benign(0.052) TCGA-VS-A950-01 10 17201176 17201176 G A TRDMT1 Missense_Mutation p.S171L 0.25 tolerated(0.14) benign(0.002) TCGA-VS-A950-01 10 98325139 98325139 C G TM9SF3 Missense_Mutation p.E115Q 0.26 tolerated(0.22) benign(0.015) TCGA-VS-A950-01 10 99696025 99696025 C T CRTAC1 Missense_Mutation p.R108Q 0.49 tolerated(0.09) possibly_damaging(0.79) TCGA-VS-A950-01 11 31112945 31112945 C T DCDC1 Silent p.Q744Q 0.41 TCGA-VS-A950-01 11 62476296 62476296 C A GNG3 3'UTR 0.15 TCGA-VS-A950-01 11 63137884 63137884 G A SLC22A9 Missense_Mutation p.G119D 0.08 deleterious(0) probably_damaging(0.999) TCGA-VS-A950-01 11 6654697 6654697 C G DCHS1 Missense_Mutation p.E801Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-VS-A950-01 11 76731871 76731871 C T ACER3 3'UTR 0.38 TCGA-VS-A950-01 11 82877510 82877510 C G PCF11 Missense_Mutation p.S524C 0.38 tolerated(0.13) possibly_damaging(0.784) TCGA-VS-A950-01 11 88300551 88300551 T C GRM5 Missense_Mutation p.N767S 0.53 deleterious(0) probably_damaging(0.951) TCGA-VS-A950-01 12 109882240 109882240 G A MYO1H Missense_Mutation p.D951N 0.23 deleterious(0) probably_damaging(0.999) TCGA-VS-A950-01 12 110771864 110771864 C T ATP2A2 Silent p.L445L 0.17 TCGA-VS-A950-01 12 11420944 11420944 C T PRB3 Missense_Mutation p.G80E 0.46 deleterious(0.01) unknown(0) TCGA-VS-A950-01 12 121883103 121883103 T G KDM2B Missense_Mutation p.E693A 0.29 deleterious(0) probably_damaging(0.952) TCGA-VS-A950-01 12 123351107 123351107 G C VPS37B 3'UTR 0.24 TCGA-VS-A950-01 12 129154104 129154107 AAGT - TMEM132C Splice_Site p.X483_splice 0.11 TCGA-VS-A950-01 12 26639186 26639186 C T ITPR2 Missense_Mutation p.E1888K 0.16 tolerated(0.13) benign(0.028) TCGA-VS-A950-01 12 40634346 40634346 G A LRRK2 Silent p.A211A 0.35 TCGA-VS-A950-01 12 51639983 51639983 C G DAZAP2 3'Flank 0.58 TCGA-VS-A950-01 12 57601850 57601850 C T LRP1 Silent p.I3963I 0.18 TCGA-VS-A950-01 12 6709799 6709799 C T CHD4 Missense_Mutation p.D322N 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.821) TCGA-VS-A950-01 12 6709805 6709805 C G CHD4 Missense_Mutation p.D320H 0.44 deleterious(0) probably_damaging(0.953) TCGA-VS-A950-01 12 78400315 78400315 C T NAV3 Missense_Mutation p.R333C 0.24 deleterious(0) probably_damaging(0.999) TCGA-VS-A950-01 12 7922667 7922667 G C NANOGNB Missense_Mutation p.R64T 0.44 tolerated(0.06) benign(0) TCGA-VS-A950-01 13 20220838 20220838 G A MPHOSPH8 Missense_Mutation p.E209K 0.44 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-VS-A950-01 13 31205368 31205368 A G USPL1 Missense_Mutation p.K209E 0.32 tolerated(1) benign(0.001) TCGA-VS-A950-01 13 36700081 36700081 C G DCLK1 Missense_Mutation p.G65A 0.32 deleterious(0) unknown(0) TCGA-VS-A950-01 13 37614548 37614548 C T SUPT20H Nonsense_Mutation p.W187* 0.46 TCGA-VS-A950-01 13 79175750 79175750 C T POU4F1 Missense_Mutation p.E354K 0.18 deleterious(0) unknown(0) TCGA-VS-A950-01 14 103601811 103601811 G A TNFAIP2 3'UTR 0.43 TCGA-VS-A950-01 14 21826496 21826496 C G SUPT16H Missense_Mutation p.E798Q 0.23 deleterious(0.01) benign(0.397) TCGA-VS-A950-01 14 23816720 23816720 C A SLC22A17 Nonsense_Mutation p.E389* 0.26 TCGA-VS-A950-01 14 24785459 24785459 A T LTB4R Missense_Mutation p.Y201F 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A950-01 14 77237561 77237561 G C VASH1 Missense_Mutation p.E143Q 0.31 deleterious(0) probably_damaging(0.991) TCGA-VS-A950-01 14 77708733 77708733 C T TMEM63C Nonsense_Mutation p.Q370* 0.25 TCGA-VS-A950-01 15 57730706 57730706 C T CGNL1 Missense_Mutation p.S170F 0.21 tolerated(0.15) benign(0.002) TCGA-VS-A950-01 15 72698983 72698983 C T TMEM202 Silent p.V126V 0.14 TCGA-VS-A950-01 15 75890873 75890873 C G SNUPN Silent p.G303G 0.54 TCGA-VS-A950-01 15 83349427 83349427 C G AP3B2 Missense_Mutation p.E284D 0.28 tolerated(0.4) benign(0.009) TCGA-VS-A950-01 15 85115553 85115553 G A LINC00933 RNA 0.46 TCGA-VS-A950-01 15 90172285 90172285 C T KIF7 Missense_Mutation p.E1196K 0.43 deleterious(0) benign(0.437) TCGA-VS-A950-01 16 23578363 23578363 C T UBFD1 Silent p.I264I 0.30 TCGA-VS-A950-01 16 53488682 53488682 G A RBL2 Silent p.L369L 0.23 TCGA-VS-A950-01 16 58324970 58324970 C T PRSS54 Silent p.E52E 0.35 TCGA-VS-A950-01 16 73092769 73092769 C T RP11-346C20.4 5'Flank 0.59 TCGA-VS-A950-01 16 77316402 77316402 G A ADAMTS18 3'UTR 0.28 TCGA-VS-A950-01 16 84199397 84199397 C T DNAAF1 Missense_Mutation p.A291V 0.12 deleterious(0) possibly_damaging(0.66) TCGA-VS-A950-01 16 88782423 88782423 G C PIEZO1 Missense_Mutation p.R2412G 0.50 tolerated(0.28) benign(0.072) TCGA-VS-A950-01 17 15604548 15604548 A G ZNF286A Silent p.R40R 0.35 TCGA-VS-A950-01 17 2699832 2699832 G A RAP1GAP2 Missense_Mutation p.R4Q 0.41 deleterious(0) probably_damaging(0.995) TCGA-VS-A950-01 17 36487144 36487144 T C GPR179 Missense_Mutation p.K770E 0.13 deleterious(0) benign(0.342) TCGA-VS-A950-01 17 40178693 40178693 A G NKIRAS2 3'Flank 0.33 TCGA-VS-A950-01 17 47302301 47302301 G A PHOSPHO1 Silent p.I62I 0.36 TCGA-VS-A950-01 17 48538619 48538619 C T ACSF2 Missense_Mutation p.S114F 0.26 deleterious(0) possibly_damaging(0.76) TCGA-VS-A950-01 17 71384087 71384087 C T SDK2 Missense_Mutation p.G1428R 0.40 deleterious(0) probably_damaging(0.998) TCGA-VS-A950-01 17 76851906 76851906 G T TIMP2 Missense_Mutation p.P169Q 0.35 deleterious(0.04) benign(0.093) TCGA-VS-A950-01 17 78063676 78063676 G A CCDC40 Missense_Mutation p.R942K 0.21 deleterious(0.01) probably_damaging(0.927) TCGA-VS-A950-01 17 79477962 79477962 C T ACTG1 Missense_Mutation p.M325I 0.12 tolerated_low_confidence(0.12) benign(0.005) TCGA-VS-A950-01 17 79478259 79478259 C T ACTG1 Missense_Mutation p.E253K 0.37 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-VS-A950-01 19 10657564 10657564 G T ATG4D Silent p.G181G 0.31 TCGA-VS-A950-01 19 17778958 17778958 C G UNC13A Missense_Mutation p.E146Q 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.661) TCGA-VS-A950-01 19 20827985 20827985 C T ZNF626 Intron 0.45 TCGA-VS-A950-01 19 40520760 40520760 A G ZNF546 Missense_Mutation p.N528S 0.12 tolerated(0.13) possibly_damaging(0.621) TCGA-VS-A950-01 19 41355744 41355744 C T CYP2A6 Missense_Mutation p.D108N 0.21 benign(0.031) TCGA-VS-A950-01 19 41939338 41939338 G A ATP5SL Silent p.L151L 0.30 TCGA-VS-A950-01 19 44833639 44833643 TTTTC - ZNF112 Frame_Shift_Del p.E229Lfs*5 0.40 TCGA-VS-A950-01 19 49414476 49414476 C T NUCB1 Silent p.F149F 0.17 TCGA-VS-A950-01 19 51020825 51020825 G A LRRC4B 3'UTR 0.14 TCGA-VS-A950-01 1 10705011 10705011 G A CASZ1 Silent p.F1277F 0.58 TCGA-VS-A950-01 1 110558137 110558137 G A AHCYL1 Missense_Mutation p.V256M 0.60 deleterious(0.03) probably_damaging(0.909) TCGA-VS-A950-01 1 160523785 160523785 G A CD84 Silent p.I180I 0.37 TCGA-VS-A950-01 1 16360480 16360480 G T CLCNKA 3'UTR 0.80 TCGA-VS-A950-01 1 17287349 17287349 G T CROCC Nonsense_Mutation p.E1377* 0.67 TCGA-VS-A950-01 1 173947662 173947662 G A RC3H1 Missense_Mutation p.H356Y 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-VS-A950-01 1 203316475 203316475 G A FMOD Silent p.I308I 0.17 TCGA-VS-A950-01 1 203316529 203316529 G A FMOD Silent p.F290F 0.13 TCGA-VS-A950-01 1 20412692 20412692 C T PLA2G5 Nonsense_Mutation p.R53* 0.53 TCGA-VS-A950-01 1 227204630 227204630 C T CDC42BPA Silent p.R1544R 0.35 TCGA-VS-A950-01 1 247654684 247654684 G A OR2W5 RNA 0.44 TCGA-VS-A950-01 1 40981132 40981132 G T EXO5 Nonsense_Mutation p.E306* 0.68 TCGA-VS-A950-01 1 67155982 67155982 C A SGIP1 Missense_Mutation p.A518D 0.37 deleterious(0.02) probably_damaging(0.981) TCGA-VS-A950-01 20 35444049 35444049 G C SOGA1 Missense_Mutation p.S599C 0.16 deleterious(0) probably_damaging(1) TCGA-VS-A950-01 20 42089974 42089974 G T SRSF6 3'UTR 0.14 TCGA-VS-A950-01 20 47273590 47273590 G A PREX1 Missense_Mutation p.T704M 0.44 deleterious(0.01) benign(0.026) TCGA-VS-A950-01 20 51872138 51872138 G A TSHZ2 Missense_Mutation p.R714H 0.21 tolerated(0.09) possibly_damaging(0.488) TCGA-VS-A950-01 20 56139286 56139286 G A PCK1 Silent p.V341V 0.35 TCGA-VS-A950-01 22 19919921 19919921 C T TXNRD2 Intron 0.28 TCGA-VS-A950-01 22 30951198 30951198 G A GAL3ST1 Silent p.N338N 0.40 TCGA-VS-A950-01 22 31536115 31536115 C T PLA2G3 Missense_Mutation p.E76K 0.65 deleterious(0.02) benign(0.421) TCGA-VS-A950-01 22 38890735 38890735 G A DDX17 Missense_Mutation p.R372C 0.28 deleterious(0.02) possibly_damaging(0.827) TCGA-VS-A950-01 22 44893183 44893183 G C LDOC1L Nonsense_Mutation p.S85* 0.32 TCGA-VS-A950-01 2 101179437 101179437 G C PDCL3 5'UTR 0.17 TCGA-VS-A950-01 2 131981189 131981189 C G POTEE Missense_Mutation p.S181C 0.17 tolerated_low_confidence(0.36) possibly_damaging(0.902) TCGA-VS-A950-01 2 132021164 132021164 C T POTEE Silent p.N712N 0.23 TCGA-VS-A950-01 2 157413905 157413905 G C GPD2 Missense_Mutation p.E326Q 0.17 tolerated(0.31) benign(0.068) TCGA-VS-A950-01 2 166626752 166626752 G A GALNT3 Silent p.F153F 0.08 TCGA-VS-A950-01 2 179701352 179701352 G A CCDC141 Intron 0.09 TCGA-VS-A950-01 2 203075478 203075478 C T SUMO1 Missense_Mutation p.D73N 0.10 deleterious(0.04) probably_damaging(0.949) TCGA-VS-A950-01 2 235403103 235403103 C T ARL4C 3'UTR 0.26 TCGA-VS-A950-01 2 239059487 239059487 C T KLHL30 Silent p.G506G 0.74 TCGA-VS-A950-01 2 36668551 36668551 G A CRIM1 Missense_Mutation p.R219H 0.09 tolerated(0.09) probably_damaging(0.984) TCGA-VS-A950-01 2 61233720 61233720 G C PUS10 Missense_Mutation p.S147C 0.14 deleterious(0) probably_damaging(0.978) TCGA-VS-A950-01 2 96578177 96578177 G C ANKRD36C Missense_Mutation p.S2C 0.19 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-VS-A950-01 3 111667840 111667840 C G PHLDB2 Missense_Mutation p.S850C 0.17 tolerated(0.07) probably_damaging(0.94) TCGA-VS-A950-01 3 113530125 113530125 C T ATP6V1A 3'UTR 0.33 TCGA-VS-A950-01 3 132245088 132245088 G A DNAJC13 Missense_Mutation p.R2115Q 0.33 tolerated(0.25) benign(0.111) TCGA-VS-A950-01 3 133347502 133347502 C A TOPBP1 Missense_Mutation p.V866F 0.31 deleterious(0) benign(0.217) TCGA-VS-A950-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.20 tolerated(0.21) possibly_damaging(0.893) TCGA-VS-A950-01 3 185823657 185823657 T A ETV5 Translation_Start_Site p.M1? 0.30 deleterious(0) probably_damaging(0.921) TCGA-VS-A950-01 3 49689465 49689465 C T BSN Missense_Mutation p.L826F 0.65 unknown(0) TCGA-VS-A950-01 3 49691719 49691719 C T BSN Missense_Mutation p.S1577F 0.43 unknown(0) TCGA-VS-A950-01 3 51457415 51457415 C T VPRBP Silent p.T574T 0.61 TCGA-VS-A950-01 3 97983804 97983804 A G OR5H6 Missense_Mutation p.T226A 0.11 deleterious(0) possibly_damaging(0.816) TCGA-VS-A950-01 4 139086332 139086332 C A SLC7A11 3'UTR 0.07 TCGA-VS-A950-01 4 89941770 89941770 C G FAM13A Missense_Mutation p.E90Q 0.41 deleterious(0.01) probably_damaging(0.938) TCGA-VS-A950-01 5 128932315 128932315 G T ADAMTS19 Missense_Mutation p.G473V 0.57 deleterious(0) probably_damaging(1) TCGA-VS-A950-01 5 37003447 37003447 C A NIPBL Missense_Mutation p.H1285N 0.21 tolerated(0.14) benign(0.351) TCGA-VS-A950-01 5 37006601 37006601 T C NIPBL Missense_Mutation p.I1333T 0.20 deleterious(0) probably_damaging(0.996) TCGA-VS-A950-01 6 114383909 114383909 A T HS3ST5 Nonsense_Mutation p.L34* 0.14 TCGA-VS-A950-01 6 143792102 143792102 C T PEX3 Silent p.F112F 0.23 TCGA-VS-A950-01 6 143792560 143792560 C G PEX3 Nonsense_Mutation p.S166* 0.27 TCGA-VS-A950-01 6 151674249 151674249 G C AKAP12 Missense_Mutation p.E1575Q 0.19 tolerated(0.06) benign(0.122) TCGA-VS-A950-01 6 152552538 152552538 T C SYNE1 Silent p.L7009L 0.28 TCGA-VS-A950-01 6 152647672 152647672 G A SYNE1 Silent p.L5018L 0.30 TCGA-VS-A950-01 6 24357816 24357816 C T DCDC2 Missense_Mutation p.V55I 0.35 tolerated(0.38) possibly_damaging(0.901) TCGA-VS-A950-01 6 42162481 42162481 C G GUCA1B Missense_Mutation p.K26N 0.44 deleterious(0.01) possibly_damaging(0.506) TCGA-VS-A950-01 6 43023934 43023934 C A MRPL2 Missense_Mutation p.R135S 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A950-01 6 90660109 90660109 G A BACH2 Silent p.Y572Y 0.32 TCGA-VS-A950-01 7 111379263 111379263 C T DOCK4 Missense_Mutation p.R1711Q 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VS-A950-01 7 1131988 1131988 C T GPER1 Silent p.F208F 0.20 TCGA-VS-A950-01 7 120496881 120496881 C A TSPAN12 5'UTR 0.35 TCGA-VS-A950-01 7 139791787 139791787 C T KDM7A Missense_Mutation p.G850S 0.40 tolerated(0.29) benign(0.007) TCGA-VS-A950-01 7 150266986 150266986 G A GIMAP4 5'UTR 0.30 TCGA-VS-A950-01 7 150912014 150912014 A T ABCF2 Missense_Mutation p.F562Y 0.18 tolerated(0.17) benign(0.163) TCGA-VS-A950-01 7 64437565 64437565 G A ZNF117 3'UTR 0.29 TCGA-VS-A950-01 7 83022012 83022012 G A SEMA3E Missense_Mutation p.S509F 0.20 tolerated(0.07) benign(0.003) TCGA-VS-A950-01 8 100533161 100533161 G A VPS13B Silent p.L1581L 0.38 TCGA-VS-A950-01 8 110450655 110450655 G A PKHD1L1 Missense_Mutation p.D1244N 0.35 tolerated(0.45) benign(0.022) TCGA-VS-A950-01 8 56436863 56436863 C A XKR4 3'UTR 0.28 TCGA-VS-A950-01 9 135975820 135975820 C A RALGDS Intron 0.57 TCGA-VS-A950-01 9 136898004 136898004 A T BRD3 3'UTR 0.08 TCGA-VS-A950-01 9 140094301 140094301 G A TPRN Missense_Mutation p.S288F 0.50 deleterious(0) probably_damaging(0.972) TCGA-VS-A950-01 9 140773572 140773572 C T CACNA1B Silent p.H117H 0.35 TCGA-VS-A950-01 X 106185380 106185380 G C MORC4 Missense_Mutation p.I816M 0.21 deleterious(0.01) benign(0.139) TCGA-VS-A950-01 X 122622711 122622712 - T GRIA3 3'UTR 0.08 TCGA-VS-A950-01 X 123235590 123235590 G A STAG2 3'Flank 0.42 TCGA-VS-A950-01 X 153047010 153047010 G A SRPK3 Missense_Mutation p.V81M 0.49 deleterious(0) probably_damaging(0.999) TCGA-VS-A950-01 X 44732761 44732761 G A KDM6A 5'UTR 0.46 TCGA-VS-A950-01 X 48931485 48931485 G A PRAF2 Silent p.I54I 0.10 TCGA-VS-A950-01 X 49070295 49070295 G A CACNA1F Missense_Mutation p.A1270V 0.33 tolerated(0.71) benign(0.418) TCGA-VS-A950-01 X 49643277 49643277 G C USP27X 5'Flank 0.26 TCGA-VS-A950-01 X 63406071 63406071 G A AMER1 3'UTR 0.50 TCGA-VS-A950-01 X 67316742 67316742 C G OPHN1 Silent p.V552V 0.20 TCGA-VS-A950-01 X 70598109 70598109 T G TAF1 Missense_Mutation p.S340A 0.16 tolerated(0.22) benign(0.025) TCGA-VS-A950-01 X 79938083 79938083 A G BRWD3 Silent p.H1426H 0.53 TCGA-VS-A952-01 10 119003693 119003693 C T SLC18A2 Silent p.S111S 0.91 TCGA-VS-A952-01 10 134713113 134713113 C T TTC40 Silent p.R994R 0.32 TCGA-VS-A952-01 10 15761566 15761566 G A ITGA8 Missense_Mutation p.R69C 0.44 deleterious(0.04) possibly_damaging(0.485) TCGA-VS-A952-01 10 32128639 32128639 C A ARHGAP12 Nonsense_Mutation p.E433* 0.39 TCGA-VS-A952-01 10 75552309 75552309 G A ZSWIM8 Missense_Mutation p.G671D 0.46 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-VS-A952-01 10 81274578 81274578 G A EIF5AL1 3'UTR 0.59 TCGA-VS-A952-01 10 89692902 89692902 G A PTEN Missense_Mutation p.G129E 0.81 deleterious(0) probably_damaging(0.998) TCGA-VS-A952-01 10 89692993 89692993 G A PTEN Silent p.R159R 0.76 TCGA-VS-A952-01 10 89693000 89693000 G A PTEN Missense_Mutation p.D162N 0.77 tolerated(0.25) benign(0.313) TCGA-VS-A952-01 11 1092270 1092270 C T MUC2 Silent p.F1363F 0.41 TCGA-VS-A952-01 11 118243959 118243959 C T UBE4A Silent p.L301L 0.77 TCGA-VS-A952-01 11 5246823 5246823 C T HBB 3'UTR 0.34 TCGA-VS-A952-01 11 5248195 5248195 C T HBB Silent p.V19V 0.34 TCGA-VS-A952-01 11 61118499 61118499 C A CYB561A3 Missense_Mutation p.W240C 0.44 deleterious(0) probably_damaging(1) TCGA-VS-A952-01 11 61120511 61120511 G C CYB561A3 Missense_Mutation p.S182C 0.42 tolerated(0.19) benign(0.036) TCGA-VS-A952-01 11 64009935 64009935 G A FKBP2 Missense_Mutation p.E26K 0.35 tolerated(0.3) benign(0.006) TCGA-VS-A952-01 11 64507550 64507550 G A RASGRP2 Silent p.L153L 0.09 TCGA-VS-A952-01 11 65546989 65546989 G A AP5B1 Silent p.H325H 0.29 TCGA-VS-A952-01 11 6650960 6650960 C T DCHS1 Missense_Mutation p.E1660K 0.44 deleterious(0.02) probably_damaging(0.923) TCGA-VS-A952-01 11 67166599 67166599 G A PPP1CA Missense_Mutation p.R198W 0.40 tolerated_low_confidence(0.07) benign(0.055) TCGA-VS-A952-01 11 67258438 67258438 C T AIP Missense_Mutation p.R323W 0.27 deleterious(0) probably_damaging(0.939) TCGA-VS-A952-01 11 6738614 6738614 C T GVINP1 RNA 0.41 TCGA-VS-A952-01 11 94823286 94823286 C T ENDOD1 Silent p.F65F 0.35 TCGA-VS-A952-01 12 108634263 108634263 C T WSCD2 Silent p.F429F 0.28 TCGA-VS-A952-01 12 116397464 116397464 G A MED13L 3'UTR 0.44 TCGA-VS-A952-01 12 27081193 27081193 C T ASUN Missense_Mutation p.D177N 0.41 tolerated(0.27) benign(0.019) TCGA-VS-A952-01 12 4736242 4736242 C T AKAP3 Missense_Mutation p.R609H 0.36 tolerated(0.49) possibly_damaging(0.506) TCGA-VS-A952-01 12 49221449 49221449 G A CACNB3 Missense_Mutation p.E408K 0.40 tolerated_low_confidence(0.2) benign(0.218) TCGA-VS-A952-01 12 7045744 7045744 G A ATN1 Nonsense_Mutation p.W438* 0.48 TCGA-VS-A952-01 12 8976430 8976430 G A A2ML1 Missense_Mutation p.G121S 0.51 tolerated(0.31) benign(0.153) TCGA-VS-A952-01 13 25466835 25466835 C T CENPJ Silent p.K1054K 0.38 TCGA-VS-A952-01 13 25895198 25895198 C G NUPL1 Silent p.L306L 0.42 TCGA-VS-A952-01 13 47297466 47297466 G T LRCH1 Splice_Site p.X623_splice 0.47 TCGA-VS-A952-01 13 52605901 52605901 C T UTP14C 3'UTR 0.46 TCGA-VS-A952-01 13 77754346 77754346 G T MYCBP2 Silent p.L1645L 0.33 TCGA-VS-A952-01 14 107013375 107013375 A C IGHV3-49 Missense_Mutation p.V8G 0.37 deleterious_low_confidence(0.01) benign(0.379) TCGA-VS-A952-01 14 37145753 37145753 C T PAX9 3'UTR 0.48 TCGA-VS-A952-01 14 69262413 69262413 C T ZFP36L1 5'Flank 0.35 TCGA-VS-A952-01 14 69262517 69262517 C T ZFP36L1 5'Flank 0.47 TCGA-VS-A952-01 14 69262806 69262806 C T ZFP36L1 5'Flank 0.57 TCGA-VS-A952-01 14 94088559 94088559 C T UNC79 Silent p.S1483S 0.42 TCGA-VS-A952-01 15 34376353 34376353 G A EMC7 3'UTR 0.37 TCGA-VS-A952-01 15 38786660 38786660 C T RASGRP1 Missense_Mutation p.E728K 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VS-A952-01 15 40034090 40034090 C T FSIP1 Missense_Mutation p.E191K 0.39 tolerated(0.31) benign(0.027) TCGA-VS-A952-01 15 40954453 40954453 G A CASC5 3'UTR 0.39 TCGA-VS-A952-01 15 43508545 43508545 G A EPB42 Silent p.F69F 0.37 TCGA-VS-A952-01 15 43622444 43622444 G A LCMT2 Missense_Mutation p.R82C 0.26 deleterious(0.02) possibly_damaging(0.75) TCGA-VS-A952-01 15 72118775 72118775 C A MYO9A 3'UTR 0.47 TCGA-VS-A952-01 15 90785112 90785112 C T GDPGP1 Silent p.D324D 0.39 TCGA-VS-A952-01 15 90799113 90799113 G A TTLL13 Missense_Mutation p.A182T 0.33 tolerated(0.08) benign(0.179) TCGA-VS-A952-01 16 135756 135756 G A MPG Missense_Mutation p.E293K 0.55 deleterious(0.01) benign(0.186) TCGA-VS-A952-01 16 1545616 1545616 C G TELO2 Missense_Mutation p.S202C 0.30 deleterious(0) benign(0.02) TCGA-VS-A952-01 16 18839380 18839380 C G SMG1 Missense_Mutation p.Q3238H 0.34 tolerated(0.05) probably_damaging(0.986) TCGA-VS-A952-01 16 2088575 2088575 C T SLC9A3R2 3'UTR 0.33 TCGA-VS-A952-01 16 21847804 21847804 G A NPIPB4 Missense_Mutation p.P635L 0.32 probably_damaging(0.931) TCGA-VS-A952-01 16 31142757 31142757 T C PRSS8 3'UTR 0.44 TCGA-VS-A952-01 16 31499002 31499002 C T SLC5A2 Silent p.P269P 0.38 TCGA-VS-A952-01 16 332904 332912 CCCCTGCTG - ARHGDIG 3'UTR 0.33 TCGA-VS-A952-01 16 4384864 4384864 C T GLIS2 Silent p.L136L 0.28 TCGA-VS-A952-01 16 70191424 70191424 G A PDPR 3'UTR 0.11 TCGA-VS-A952-01 16 70287677 70287677 G A AARS Silent p.I849I 0.41 TCGA-VS-A952-01 16 70896078 70896078 C T HYDIN Missense_Mutation p.E3884K 0.65 benign(0.018) TCGA-VS-A952-01 16 787210 787210 C T NARFL Silent p.L94L 0.30 TCGA-VS-A952-01 16 787365 787365 C G NARFL Intron 0.36 TCGA-VS-A952-01 16 787878 787878 C T NARFL Intron 0.30 TCGA-VS-A952-01 17 27185648 27185648 G A ERAL1 Missense_Mutation p.E256K 0.53 tolerated(0.13) benign(0.003) TCGA-VS-A952-01 17 29848323 29848323 G A RAB11FIP4 Missense_Mutation p.D235N 0.48 tolerated(0.11) probably_damaging(0.932) TCGA-VS-A952-01 17 33681024 33681024 G C SLFN11 Nonsense_Mutation p.S418* 0.41 TCGA-VS-A952-01 17 34264896 34264896 C T LYZL6 Missense_Mutation p.S55N 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A952-01 17 36688470 36688470 C T SRCIN1 3'UTR 0.74 TCGA-VS-A952-01 17 36927280 36927280 C T PIP4K2B Missense_Mutation p.M351I 0.39 tolerated(1) benign(0.001) TCGA-VS-A952-01 17 39021076 39021076 C T KRT12 Missense_Mutation p.M263I 0.38 deleterious(0) benign(0.131) TCGA-VS-A952-01 17 40070122 40070122 G A ACLY Missense_Mutation p.S2L 0.35 deleterious(0) probably_damaging(0.996) TCGA-VS-A952-01 17 53854593 53854593 G A PCTP 3'UTR 0.42 TCGA-VS-A952-01 17 6337365 6337365 G A AIPL1 Silent p.D50D 0.40 TCGA-VS-A952-01 17 71189190 71189190 G A COG1 5'UTR 0.50 TCGA-VS-A952-01 17 7187943 7187943 C T SLC2A4 Silent p.I289I 0.28 TCGA-VS-A952-01 17 73205958 73205958 C T NUP85 Silent p.I56I 0.45 TCGA-VS-A952-01 17 74387108 74387108 G A UBE2O Silent p.F1265F 0.35 TCGA-VS-A952-01 17 8054081 8054081 G A PER1 5'UTR 0.32 TCGA-VS-A952-01 18 28991220 28991220 G A DSG4 Missense_Mutation p.G741R 0.73 deleterious(0.02) possibly_damaging(0.841) TCGA-VS-A952-01 18 48591895 48591895 A G SMAD4 Missense_Mutation p.Y353C 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-VS-A952-01 19 2714974 2714974 C G DIRAS1 3'UTR 0.57 TCGA-VS-A952-01 19 33113379 33113379 C T ANKRD27 Silent p.E592E 0.31 TCGA-VS-A952-01 19 39936374 39936374 G T SUPT5H Intron 0.78 TCGA-VS-A952-01 19 45873563 45873563 G A ERCC2 Intron 0.97 TCGA-VS-A952-01 19 4719940 4719940 G T DPP9 5'UTR 0.40 TCGA-VS-A952-01 19 48698079 48698079 G A C19orf68 Missense_Mutation p.G253D 0.82 deleterious(0.02) probably_damaging(0.927) TCGA-VS-A952-01 19 58310768 58310768 G C ZNF586 3'UTR 1.00 TCGA-VS-A952-01 19 6372909 6372909 G C ALKBH7 Silent p.L26L 0.36 TCGA-VS-A952-01 19 6532807 6532807 C T TNFSF9 Missense_Mutation p.A93V 0.09 deleterious(0) probably_damaging(0.997) TCGA-VS-A952-01 19 6685113 6685113 G A C3 Silent p.D1285D 0.40 TCGA-VS-A952-01 19 9067132 9067132 A G MUC16 Missense_Mutation p.F6772L 0.14 unknown(0) TCGA-VS-A952-01 1 11252365 11252366 TA - ANGPTL7 Frame_Shift_Del p.Y139Pfs*7 0.20 TCGA-VS-A952-01 1 17701948 17701948 C G PADI6 RNA 0.35 TCGA-VS-A952-01 1 206649571 206649571 A G IKBKE Missense_Mutation p.I136V 0.35 deleterious(0) possibly_damaging(0.855) TCGA-VS-A952-01 1 22921765 22921765 C T EPHA8 Missense_Mutation p.T549M 0.10 tolerated(0.25) possibly_damaging(0.649) TCGA-VS-A952-01 1 233397867 233397867 C T PCNXL2 Missense_Mutation p.R135Q 0.41 tolerated(0.31) benign(0.003) TCGA-VS-A952-01 1 23686463 23686463 G T ZNF436 3'UTR 0.26 TCGA-VS-A952-01 1 27676231 27676231 C T SYTL1 Missense_Mutation p.S241L 1.00 deleterious(0) possibly_damaging(0.734) TCGA-VS-A952-01 1 33240471 33240471 G C KIAA1522 3'UTR 0.46 TCGA-VS-A952-01 1 3428588 3428588 C T MEGF6 Missense_Mutation p.D320N 0.45 tolerated(0.07) possibly_damaging(0.451) TCGA-VS-A952-01 1 35370790 35370790 C G DLGAP3 Silent p.L65L 0.37 TCGA-VS-A952-01 1 35887080 35887080 T G ZMYM4 3'UTR 0.36 TCGA-VS-A952-01 1 43805635 43805635 G T MPL Missense_Mutation p.A231S 0.17 tolerated(0.14) benign(0.046) TCGA-VS-A952-01 1 47533290 47533290 T A CYP4Z1 Missense_Mutation p.L43Q 0.48 deleterious(0) possibly_damaging(0.679) TCGA-VS-A952-01 1 54348798 54348799 AG - YIPF1 Frame_Shift_Del p.S61* 0.36 TCGA-VS-A952-01 1 85592359 85592359 A G WDR63 Missense_Mutation p.I760V 0.34 tolerated(0.28) benign(0.001) TCGA-VS-A952-01 1 89578343 89578343 C T GBP2 Missense_Mutation p.D392N 0.40 tolerated(0.18) benign(0.025) TCGA-VS-A952-01 20 23065608 23065608 G A CD93 Missense_Mutation p.H408Y 0.67 tolerated(0.83) benign(0.002) TCGA-VS-A952-01 20 35879543 35879543 G A GHRH 3'UTR 0.34 TCGA-VS-A952-01 20 36937432 36937432 G A BPI Missense_Mutation p.G120R 0.34 deleterious(0) probably_damaging(1) TCGA-VS-A952-01 20 48744581 48744581 T C TMEM189-UBE2V1 Missense_Mutation p.I208V 0.47 tolerated_low_confidence(0.16) benign(0.112) TCGA-VS-A952-01 21 34652208 34652208 C T IL10RB Silent p.N161N 0.18 TCGA-VS-A952-01 21 45799065 45799065 C T TRPM2 Silent p.V400V 0.38 TCGA-VS-A952-01 22 21332213 21332213 G A AIFM3 Missense_Mutation p.G466S 0.14 deleterious(0) probably_damaging(1) TCGA-VS-A952-01 22 22986638 22986638 C G GGTLC2 5'Flank 0.61 TCGA-VS-A952-01 2 100170944 100170944 C T AFF3 Missense_Mutation p.V1155M 0.33 deleterious(0.01) possibly_damaging(0.844) TCGA-VS-A952-01 2 121554883 121554883 G A GLI2 5'UTR 0.33 TCGA-VS-A952-01 2 149840156 149840156 G A KIF5C Missense_Mutation p.R531K 0.46 tolerated(0.43) benign(0.005) TCGA-VS-A952-01 2 152476033 152476033 C T NEB Missense_Mutation p.E3602K 0.47 benign(0.437) TCGA-VS-A952-01 2 160604891 160604891 C G MARCH7 Missense_Mutation p.H364D 0.33 tolerated(0.19) benign(0.418) TCGA-VS-A952-01 2 160605027 160605030 CTTC TTTTT MARCH7 Frame_Shift_Ins p.S409Ffs*8 0.54 TCGA-VS-A952-01 2 160605327 160605327 C T MARCH7 Missense_Mutation p.S509L 0.51 tolerated(0.16) probably_damaging(0.992) TCGA-VS-A952-01 2 162267991 162267991 G A PSMD14 3'UTR 0.31 TCGA-VS-A952-01 2 166744830 166744830 C T TTC21B Missense_Mutation p.E1140K 0.12 deleterious(0) probably_damaging(0.999) TCGA-VS-A952-01 2 201437992 201437992 C T SGOL2 Nonsense_Mutation p.Q975* 0.50 TCGA-VS-A952-01 2 44502653 44502653 C G SLC3A1 5'UTR 0.24 TCGA-VS-A952-01 2 73492583 73492583 C T FBXO41 Missense_Mutation p.R464H 0.21 tolerated(0.13) possibly_damaging(0.46) TCGA-VS-A952-01 2 95941799 95941799 G C PROM2 Missense_Mutation p.R139P 0.33 deleterious(0.02) benign(0.298) TCGA-VS-A952-01 3 100467381 100467381 C A TFG 3'UTR 0.17 TCGA-VS-A952-01 3 123005625 123005625 C T ADCY5 Silent p.V1188V 0.44 TCGA-VS-A952-01 3 184800768 184800768 C T C3orf70 3'UTR 0.42 TCGA-VS-A952-01 3 27473133 27473133 G A SLC4A7 Missense_Mutation p.S260F 0.59 deleterious(0.04) possibly_damaging(0.882) TCGA-VS-A952-01 3 47040244 47040244 C T NBEAL2 Missense_Mutation p.R1087C 0.54 deleterious(0) possibly_damaging(0.762) TCGA-VS-A952-01 3 52181087 52181087 G A POC1A Silent p.I160I 0.34 TCGA-VS-A952-01 3 63264025 63264025 C A SYNPR 5'UTR 0.42 TCGA-VS-A952-01 4 108911038 108911038 C T HADH 5'UTR 0.55 TCGA-VS-A952-01 4 115998042 115998042 C A NDST4 Nonsense_Mutation p.E51* 0.44 TCGA-VS-A952-01 4 122068315 122068315 T C TNIP3 Silent p.E285E 0.04 TCGA-VS-A952-01 4 134073036 134073036 C T PCDH10 Missense_Mutation p.R581C 0.18 deleterious(0) possibly_damaging(0.794) TCGA-VS-A952-01 4 144390390 144390390 A T GAB1 3'UTR 0.39 TCGA-VS-A952-01 4 147561186 147561186 G A POU4F2 Silent p.S152S 0.19 TCGA-VS-A952-01 4 54319265 54319265 G A FIP1L1 Silent p.E488E 0.50 TCGA-VS-A952-01 4 68504692 68504692 C G UBA6 Missense_Mutation p.D569H 0.45 deleterious(0) probably_damaging(1) TCGA-VS-A952-01 4 70947215 70947215 C T CSN1S2AP RNA 0.49 TCGA-VS-A952-01 4 88903846 88903846 G A SPP1 Missense_Mutation p.R248Q 0.50 tolerated(0.52) possibly_damaging(0.863) TCGA-VS-A952-01 5 138651405 138651405 G A MATR3 Missense_Mutation p.D332N 0.42 tolerated(0.4) benign(0.039) TCGA-VS-A952-01 5 140615293 140615293 C - PCDHB18 RNA 0.25 TCGA-VS-A952-01 5 140626403 140626403 C G PCDHB15 Missense_Mutation p.I419M 0.13 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-VS-A952-01 5 140762705 140762705 G A PCDHGA7 Missense_Mutation p.R80H 0.41 deleterious_low_confidence(0.03) probably_damaging(0.982) TCGA-VS-A952-01 5 150227588 150227588 C G IRGM 5'UTR 0.70 TCGA-VS-A952-01 5 180432469 180432469 C A BTNL3 Missense_Mutation p.S333Y 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A952-01 5 37008133 37008134 - T NIPBL Frame_Shift_Ins p.V1424Cfs*6 0.24 TCGA-VS-A952-01 6 10586787 10586787 A G GCNT2 Intron 0.51 TCGA-VS-A952-01 6 13487011 13487011 C T GFOD1 Missense_Mutation p.E38K 0.63 tolerated(0.16) possibly_damaging(0.516) TCGA-VS-A952-01 6 147022141 147022141 G A ADGB Missense_Mutation p.E548K 0.30 deleterious(0.03) possibly_damaging(0.849) TCGA-VS-A952-01 6 160221394 160221394 G A PNLDC1 5'UTR 0.44 TCGA-VS-A952-01 6 16740011 16740011 C A ATXN1 Intron 0.21 TCGA-VS-A952-01 6 31939295 31939295 G C DXO Missense_Mutation p.S53C 0.18 deleterious(0) probably_damaging(0.999) TCGA-VS-A952-01 6 32632758 32632758 G A HLA-DQB1 Nonsense_Mutation p.R66* 0.20 TCGA-VS-A952-01 6 41126701 41126701 C A TREM2 Missense_Mutation p.A196S 0.30 tolerated(0.05) benign(0.169) TCGA-VS-A952-01 6 56535506 56535506 G A DST Missense_Mutation p.R172W 0.24 probably_damaging(0.996) TCGA-VS-A952-01 6 97677229 97677229 C T MMS22L Missense_Mutation p.G527D 0.21 deleterious(0) probably_damaging(0.944) TCGA-VS-A952-01 7 100224476 100224476 G A TFR2 Silent p.I682I 0.44 TCGA-VS-A952-01 7 100696301 100696301 G A MUC17 Missense_Mutation p.E4380K 0.50 unknown(0) TCGA-VS-A952-01 7 103234298 103234312 GGGTAATCAAAAGCT - RELN In_Frame_Del p.A1244_P1248del 0.26 TCGA-VS-A952-01 7 107788821 107788821 C T NRCAM 3'UTR 0.44 TCGA-VS-A952-01 7 108524279 108524279 T C C7orf66 Missense_Mutation p.M45V 0.40 tolerated_low_confidence(1) benign(0.14) TCGA-VS-A952-01 7 127251719 127251719 G T PAX4 Silent p.G253G 0.17 TCGA-VS-A952-01 7 138738755 138738755 C G ZC3HAV1 Missense_Mutation p.K758N 0.37 tolerated(0.14) benign(0.12) TCGA-VS-A952-01 7 138768658 138768658 G A ZC3HAV1 Missense_Mutation p.R189W 0.45 deleterious(0) probably_damaging(0.973) TCGA-VS-A952-01 7 155251015 155251015 G A EN2 5'UTR 0.39 TCGA-VS-A952-01 7 28449692 28449692 C T CREB5 5'Flank 0.50 TCGA-VS-A952-01 7 36894425 36894425 C G ELMO1 3'UTR 0.32 TCGA-VS-A952-01 7 38516520 38516520 C T AMPH Missense_Mutation p.R149H 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A952-01 7 4899319 4899319 G A PAPOLB 3'UTR 0.20 TCGA-VS-A952-01 7 4899715 4899715 G A PAPOLB Missense_Mutation p.S575F 0.36 deleterious(0.03) benign(0.275) TCGA-VS-A952-01 7 66236946 66236946 G A RABGEF1 Silent p.K20K 0.38 TCGA-VS-A952-01 8 134024182 134024182 C T TG Missense_Mutation p.S2100L 0.36 deleterious(0.04) benign(0.303) TCGA-VS-A952-01 8 145059802 145059802 C T PARP10 Missense_Mutation p.E151K 0.33 tolerated(0.35) possibly_damaging(0.811) TCGA-VS-A952-01 8 16026354 16026354 C T MSR1 Silent p.K81K 0.37 TCGA-VS-A952-01 8 40388300 40388300 G A ZMAT4 3'UTR 0.37 TCGA-VS-A952-01 8 61693690 61693690 G C CHD7 Missense_Mutation p.K599N 0.51 benign(0.403) TCGA-VS-A952-01 8 77775664 77775664 C T ZFHX4 Silent p.V3238V 0.34 TCGA-VS-A952-01 8 87111337 87111337 G - ATP6V0D2 Frame_Shift_Del 0.52 TCGA-VS-A952-01 8 90801572 90801584 ATGAAGCTGCATC - RIPK2 Frame_Shift_Del p.M383Tfs*32 0.17 TCGA-VS-A952-01 8 94929393 94929393 C T PDP1 5'UTR 0.32 TCGA-VS-A952-01 9 117810756 117810756 G A TNC Silent p.F1545F 0.40 TCGA-VS-A952-01 9 17796343 17796343 A T SH3GL2 3'UTR 0.50 TCGA-VS-A952-01 9 18941710 18941710 G A FAM154A Nonsense_Mutation p.R116* 0.50 TCGA-VS-A952-01 9 32542160 32542160 C T TOPORS Missense_Mutation p.R788K 0.47 tolerated(0.45) unknown(0) TCGA-VS-A952-01 9 8341964 8341964 C T PTPRD Missense_Mutation p.R1559Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-VS-A952-01 X 10096202 10096202 G A WWC3 Splice_Site p.X760_splice 0.35 TCGA-VS-A952-01 X 123518090 123518090 C T TENM1 Missense_Mutation p.D2231N 0.41 deleterious(0) benign(0.039) TCGA-VS-A952-01 X 129360863 129360863 G A ZNF280C Missense_Mutation p.S422L 0.48 deleterious(0) possibly_damaging(0.888) TCGA-VS-A952-01 X 152825293 152825293 G A ATP2B3 Missense_Mutation p.R911Q 0.50 deleterious(0) probably_damaging(0.979) TCGA-VS-A952-01 X 153152431 153152431 G A LCA10 Missense_Mutation p.R273Q 0.38 tolerated_low_confidence(0.42) benign(0) TCGA-VS-A952-01 X 153583322 153583322 C T FLNA Silent p.V1696V 0.38 TCGA-VS-A952-01 X 2656252 2656252 G T CD99 Nonsense_Mutation p.E163* 0.38 TCGA-VS-A952-01 X 32867868 32867868 C T DMD Missense_Mutation p.E55K 0.37 possibly_damaging(0.818) TCGA-VS-A952-01 X 48370836 48370836 G A PORCN Missense_Mutation p.V166I 0.32 tolerated(1) benign(0.006) TCGA-VS-A952-01 X 65475982 65475982 C T HEPH Silent p.I956I 0.48 TCGA-VS-A952-01 X 70339533 70339533 C G MED12 Intron 0.55 TCGA-VS-A952-01 X 70617303 70617303 G C TAF1 Missense_Mutation p.D1223H 0.27 deleterious(0) possibly_damaging(0.889) TCGA-VS-A953-01 10 102723017 102723017 G C FAM178A 3'Flank 0.88 TCGA-VS-A953-01 10 105194569 105194569 G C PDCD11 Missense_Mutation p.E1228Q 0.97 deleterious(0.04) benign(0.052) TCGA-VS-A953-01 10 106160486 106160486 G A CCDC147 Missense_Mutation p.D622N 0.89 deleterious(0) possibly_damaging(0.869) TCGA-VS-A953-01 10 106160602 106160602 G A CCDC147 Silent p.K660K 0.88 TCGA-VS-A953-01 10 114918455 114918455 C T TCF7L2 Intron 0.31 TCGA-VS-A953-01 10 11504290 11504290 G A USP6NL 3'UTR 1.00 TCGA-VS-A953-01 10 123970759 123970759 G A TACC2 Silent p.K2273K 0.48 TCGA-VS-A953-01 10 133930883 133930883 G C JAKMIP3 Silent p.G146G 0.21 TCGA-VS-A953-01 10 134595576 134595576 G A INPP5A 3'UTR 0.46 TCGA-VS-A953-01 10 21823336 21823336 C G MLLT10 5'UTR 0.47 TCGA-VS-A953-01 10 21823339 21823339 T G MLLT10 5'UTR 0.47 TCGA-VS-A953-01 10 28824537 28824537 G C WAC Missense_Mutation p.R42T 0.86 deleterious(0.03) probably_damaging(0.966) TCGA-VS-A953-01 10 38241651 38241651 C T ZNF25 Missense_Mutation p.E259K 0.34 tolerated(0.18) possibly_damaging(0.559) TCGA-VS-A953-01 10 5969409 5969409 G A FBXO18 Missense_Mutation p.E963K 0.91 deleterious(0.02) possibly_damaging(0.755) TCGA-VS-A953-01 10 62648405 62648405 G A RHOBTB1 Missense_Mutation p.P341S 0.80 tolerated(0.97) benign(0.002) TCGA-VS-A953-01 10 696089 696089 G C PRR26 Missense_Mutation p.E13D 1.00 deleterious_low_confidence(0) benign(0.388) TCGA-VS-A953-01 10 75434051 75434051 T C AGAP5 3'UTR 0.08 TCGA-VS-A953-01 10 75607093 75607093 C T CAMK2G Missense_Mutation p.E237K 0.57 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VS-A953-01 10 81317865 81317865 C T SFTPA2 Missense_Mutation p.E105K 0.24 tolerated(0.24) benign(0.008) TCGA-VS-A953-01 10 87407212 87407212 G C GRID1 Intron 0.20 TCGA-VS-A953-01 10 88635839 88635839 C T BMPR1A Nonsense_Mutation p.Q22* 0.94 TCGA-VS-A953-01 10 89692905 89692905 G T PTEN Missense_Mutation p.R130L 0.91 deleterious(0) probably_damaging(0.999) TCGA-VS-A953-01 10 90770311 90770311 C A FAS Silent p.I153I 0.32 TCGA-VS-A953-01 10 93040951 93040951 G A PCGF5 3'UTR 0.44 TCGA-VS-A953-01 10 96708892 96708892 G C CYP2C9 Missense_Mutation p.D224H 0.16 tolerated(0.29) benign(0.023) TCGA-VS-A953-01 11 102649382 102649382 C T MMP10 Missense_Mutation p.D199N 0.42 deleterious(0) probably_damaging(0.992) TCGA-VS-A953-01 11 102707168 102707168 G C MMP3 Intron 0.19 TCGA-VS-A953-01 11 103043912 103043912 C T DYNC2H1 Silent p.F1812F 0.51 TCGA-VS-A953-01 11 10327612 10327612 A G ADM Missense_Mutation p.D72G 0.77 deleterious(0.04) benign(0.028) TCGA-VS-A953-01 11 1084357 1084357 C T MUC2 Missense_Mutation p.S830F 0.44 benign(0.199) TCGA-VS-A953-01 11 1084373 1084373 C G MUC2 Missense_Mutation p.I835M 0.42 probably_damaging(0.972) TCGA-VS-A953-01 11 118766636 118766636 C G BCL9L 3'UTR 0.18 TCGA-VS-A953-01 11 119210323 119210323 G C C1QTNF5 Silent p.V150V 0.46 TCGA-VS-A953-01 11 1215430 1215430 G C MUC5AC RNA 0.32 TCGA-VS-A953-01 11 124506829 124506829 C T SIAE 3'UTR 0.44 TCGA-VS-A953-01 11 124637152 124637152 C G MSANTD2 Missense_Mutation p.E482Q 0.20 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-VS-A953-01 11 13380069 13380069 G A ARNTL Missense_Mutation p.A104T 0.49 deleterious(0.01) probably_damaging(0.988) TCGA-VS-A953-01 11 1862272 1862272 G A TNNI2 Missense_Mutation p.M96I 0.22 deleterious(0) benign(0.099) TCGA-VS-A953-01 11 4566782 4566782 C T OR52M1 Missense_Mutation p.A121V 0.51 deleterious(0.01) probably_damaging(0.912) TCGA-VS-A953-01 11 46741397 46741397 G C F2 Missense_Mutation p.E75D 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A953-01 11 47493852 47493852 C T CELF1 Missense_Mutation p.G490D 0.29 deleterious(0) probably_damaging(0.993) TCGA-VS-A953-01 11 47739004 47739004 C T FNBP4 Silent p.L1008L 0.50 TCGA-VS-A953-01 11 5602401 5602401 C T OR52B6 Missense_Mutation p.P99S 0.26 deleterious(0) probably_damaging(0.996) TCGA-VS-A953-01 11 56058030 56058030 G C OR8H1 Nonsense_Mutation p.S170* 0.59 TCGA-VS-A953-01 11 57886845 57886845 C T OR9I1 Silent p.E24E 0.18 TCGA-VS-A953-01 11 58978268 58978268 C G MPEG1 Missense_Mutation p.E691Q 0.58 tolerated(0.32) benign(0.003) TCGA-VS-A953-01 11 59132243 59132243 C G OR5AN1 Missense_Mutation p.I104M 0.12 deleterious(0.04) benign(0.027) TCGA-VS-A953-01 11 62297097 62297097 C G AHNAK Missense_Mutation p.D1598H 0.25 probably_damaging(1) TCGA-VS-A953-01 11 62416776 62416776 C T INTS5 Missense_Mutation p.G259E 0.48 tolerated(0.16) benign(0.192) TCGA-VS-A953-01 11 62417303 62417303 C T INTS5 Silent p.E83E 0.56 TCGA-VS-A953-01 11 62572819 62572819 C T NXF1 Missense_Mutation p.E4K 0.25 tolerated(0.3) benign(0.022) TCGA-VS-A953-01 11 65380900 65380900 C T MAP3K11 Missense_Mutation p.E110K 0.25 deleterious(0.04) benign(0.221) TCGA-VS-A953-01 11 65629456 65629456 C G MUS81 Nonsense_Mutation p.Y130* 0.11 TCGA-VS-A953-01 11 6632622 6632622 C T TAF10 Missense_Mutation p.R150H 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-VS-A953-01 11 6640544 6640544 G C TPP1 Intron 0.46 TCGA-VS-A953-01 11 6644544 6644544 G A DCHS1 Missense_Mutation p.A2788V 0.12 tolerated(1) benign(0.001) TCGA-VS-A953-01 11 67025109 67025109 C G KDM2A 3'UTR 0.15 TCGA-VS-A953-01 11 67068500 67068500 C T ANKRD13D Silent p.L371L 0.33 TCGA-VS-A953-01 11 67068502 67068502 C T ANKRD13D Missense_Mutation p.S372F 0.39 deleterious(0) probably_damaging(0.977) TCGA-VS-A953-01 11 67068527 67068527 C T ANKRD13D Silent p.I380I 0.40 TCGA-VS-A953-01 11 67068578 67068578 C T ANKRD13D Silent p.F397F 0.47 TCGA-VS-A953-01 11 67068867 67068867 C T ANKRD13D Missense_Mutation p.S449L 0.60 tolerated(0.18) benign(0.072) TCGA-VS-A953-01 11 67191622 67191622 C G CARNS1 Silent p.L801L 0.59 TCGA-VS-A953-01 11 67191794 67191794 C G CARNS1 Missense_Mutation p.L859V 0.48 tolerated(0.13) possibly_damaging(0.861) TCGA-VS-A953-01 11 67192024 67192024 C T CARNS1 Silent p.I935I 0.49 TCGA-VS-A953-01 11 68452453 68452453 C T GAL Missense_Mutation p.S21F 0.32 deleterious(0) benign(0.102) TCGA-VS-A953-01 11 7021206 7021206 G A ZNF214 Nonsense_Mutation p.R570* 0.25 TCGA-VS-A953-01 11 71117359 71117359 C T AP002387.1 RNA 0.25 TCGA-VS-A953-01 11 72492179 72492179 G A STARD10 Silent p.V16V 0.22 TCGA-VS-A953-01 11 73744608 73744608 C G C2CD3 3'Flank 0.50 TCGA-VS-A953-01 11 74168587 74168587 C G KCNE3 Missense_Mutation p.E8Q 0.44 deleterious_low_confidence(0.02) benign(0.006) TCGA-VS-A953-01 11 92624149 92624149 C T FAT3 Missense_Mutation p.S4547L 0.73 benign(0.295) TCGA-VS-A953-01 11 92899138 92899138 C A SLC36A4 Missense_Mutation p.K271N 0.37 tolerated(0.1) benign(0.063) TCGA-VS-A953-01 12 101723213 101723213 G C UTP20 Missense_Mutation p.D1135H 0.62 deleterious(0.03) benign(0.013) TCGA-VS-A953-01 12 101789335 101789335 C T ARL1 3'UTR 0.47 TCGA-VS-A953-01 12 113901209 113901209 C T LHX5 Missense_Mutation p.G332D 0.39 deleterious(0.02) possibly_damaging(0.881) TCGA-VS-A953-01 12 120960035 120960035 C T COQ5 Missense_Mutation p.D112N 0.45 deleterious(0) probably_damaging(1) TCGA-VS-A953-01 12 120960119 120960119 C G COQ5 Missense_Mutation p.D84H 0.50 deleterious(0) probably_damaging(1) TCGA-VS-A953-01 12 123350810 123350810 C T VPS37B 3'UTR 0.23 TCGA-VS-A953-01 12 12397539 12397539 C G LRP6 Missense_Mutation p.A36P 0.49 deleterious(0.02) possibly_damaging(0.811) TCGA-VS-A953-01 12 132400457 132400457 C G ULK1 Missense_Mutation p.S544C 0.54 tolerated(0.08) benign(0.004) TCGA-VS-A953-01 12 15822711 15822711 C T EPS8 Missense_Mutation p.D85N 0.24 deleterious(0) probably_damaging(0.923) TCGA-VS-A953-01 12 32884848 32884848 C T DNM1L Missense_Mutation p.R473C 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-VS-A953-01 12 34180287 34180287 A C ALG10 3'UTR 0.45 TCGA-VS-A953-01 12 41410494 41410494 G A CNTN1 Missense_Mutation p.R732K 0.33 tolerated(0.39) possibly_damaging(0.764) TCGA-VS-A953-01 12 46246372 46246372 C G ARID2 Nonsense_Mutation p.S1489* 0.53 TCGA-VS-A953-01 12 48172902 48172902 C T SLC48A1 Silent p.F76F 0.09 TCGA-VS-A953-01 12 49431177 49431177 C T KMT2D Missense_Mutation p.R3321Q 0.50 benign(0.072) TCGA-VS-A953-01 12 51130880 51130880 C G DIP2B Missense_Mutation p.S1388C 0.44 deleterious(0) probably_damaging(0.996) TCGA-VS-A953-01 12 52981632 52981632 C T KRT72 Missense_Mutation p.A365T 0.33 tolerated(0.11) benign(0.009) TCGA-VS-A953-01 12 53169284 53169284 C T KRT76 Missense_Mutation p.E235K 0.56 deleterious(0) probably_damaging(0.968) TCGA-VS-A953-01 12 53605642 53605642 C T RARG Missense_Mutation p.E395K 0.42 deleterious(0.01) benign(0.073) TCGA-VS-A953-01 12 53679742 53679742 G A ESPL1 Silent p.V1074V 0.52 TCGA-VS-A953-01 12 53865460 53865460 C G PCBP2 Missense_Mutation p.I311M 0.41 deleterious(0) probably_damaging(0.983) TCGA-VS-A953-01 12 54756615 54756615 G A GPR84 Silent p.L341L 0.18 TCGA-VS-A953-01 12 56514474 56514474 G C ZC3H10 Missense_Mutation p.R43T 0.15 deleterious(0) probably_damaging(0.997) TCGA-VS-A953-01 12 69326614 69326614 C G CPM Missense_Mutation p.D2H 0.12 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-VS-A953-01 12 70064261 70064261 C T BEST3 Intron 0.52 TCGA-VS-A953-01 12 70064267 70064267 C T BEST3 Intron 0.48 TCGA-VS-A953-01 12 70352269 70352269 C G MYRFL Missense_Mutation p.F237L 0.40 tolerated(0.07) possibly_damaging(0.741) TCGA-VS-A953-01 12 7283279 7283279 C G CLSTN3 Missense_Mutation p.S12C 0.49 tolerated(0.22) unknown(0) TCGA-VS-A953-01 12 94575329 94575329 C G PLXNC1 Missense_Mutation p.I437M 0.40 tolerated(0.1) benign(0.001) TCGA-VS-A953-01 12 96272011 96272011 C G CCDC38 Missense_Mutation p.G419A 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A953-01 13 111953868 111953868 G C ARHGEF7 Missense_Mutation p.E603Q 0.23 tolerated(0.07) probably_damaging(0.982) TCGA-VS-A953-01 13 20242623 20242623 G C MPHOSPH8 Missense_Mutation p.D761H 0.49 deleterious(0) probably_damaging(0.999) TCGA-VS-A953-01 13 20398760 20398760 C A ZMYM5 Nonsense_Mutation p.E623* 0.09 TCGA-VS-A953-01 13 25370341 25370341 C T RNF17 Missense_Mutation p.S436L 0.24 deleterious(0.02) benign(0.161) TCGA-VS-A953-01 13 28239911 28239911 G C POLR1D Missense_Mutation p.E64Q 0.41 tolerated(0.06) possibly_damaging(0.864) TCGA-VS-A953-01 13 47011578 47011578 C T PPP1R2P4 RNA 0.35 TCGA-VS-A953-01 13 49070359 49070359 G T RCBTB2 Missense_Mutation p.L495M 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A953-01 13 61102587 61102587 C T TDRD3 Silent p.L410L 0.33 TCGA-VS-A953-01 14 100604110 100604110 G C EVL Missense_Mutation p.K355N 0.53 tolerated(0.15) probably_damaging(0.998) TCGA-VS-A953-01 14 20843965 20843965 G A TEP1 Silent p.A2104A 1.00 TCGA-VS-A953-01 14 21979314 21979314 G C METTL3 Missense_Mutation p.L18V 0.12 deleterious(0) possibly_damaging(0.847) TCGA-VS-A953-01 14 22315151 22315151 T G TRAV8-2 Missense_Mutation p.V30G 0.10 deleterious(0) probably_damaging(0.986) TCGA-VS-A953-01 14 23513191 23513191 C G PSMB11 3'UTR 1.00 TCGA-VS-A953-01 14 23794613 23794613 T A PABPN1 3'UTR 0.12 TCGA-VS-A953-01 14 24877167 24877167 C T NYNRIN Silent p.L97L 0.44 TCGA-VS-A953-01 14 51099273 51099273 G A ATL1 3'UTR 0.33 TCGA-VS-A953-01 14 51221305 51221305 C T NIN Silent p.K1570K 0.46 TCGA-VS-A953-01 14 56232987 56232987 G A RP11-813I20.2 Intron 0.48 TCGA-VS-A953-01 14 56233296 56233296 G A RP11-813I20.2 Intron 0.44 TCGA-VS-A953-01 14 65210358 65210358 G C PLEKHG3 Silent p.P1143P 0.58 TCGA-VS-A953-01 14 69518031 69518031 C T DCAF5 3'UTR 0.37 TCGA-VS-A953-01 14 69727161 69727161 G C GALNT16 Missense_Mutation p.E52Q 0.28 tolerated(0.27) benign(0.313) TCGA-VS-A953-01 14 75475795 75475795 C T EIF2B2 Silent p.L320L 0.09 TCGA-VS-A953-01 14 76349123 76349123 G C TTLL5 Missense_Mutation p.Q1206H 0.19 tolerated_low_confidence(0.06) benign(0.396) TCGA-VS-A953-01 14 92961367 92961367 G C SLC24A4 3'UTR 0.52 TCGA-VS-A953-01 14 92961556 92961556 G C SLC24A4 3'UTR 0.54 TCGA-VS-A953-01 14 94067052 94067052 T C UNC79 Silent p.F993F 0.93 TCGA-VS-A953-01 15 102304466 102304466 C T DNM1P47 RNA 0.25 TCGA-VS-A953-01 15 21051242 21051242 A T POTEB2 Missense_Mutation p.D406E 0.12 tolerated(0.08) benign(0.031) TCGA-VS-A953-01 15 23044513 23044513 G C NIPA1 3'UTR 0.75 TCGA-VS-A953-01 15 40623880 40623880 C T C15orf52 3'Flank 0.40 TCGA-VS-A953-01 15 40943712 40943712 C G CASC5 Missense_Mutation p.Q2112E 0.21 tolerated(0.18) benign(0.132) TCGA-VS-A953-01 15 42092100 42092100 C G MAPKBP1 Missense_Mutation p.A65G 0.37 deleterious(0.01) possibly_damaging(0.753) TCGA-VS-A953-01 15 42434382 42434382 C G PLA2G4F Missense_Mutation p.E784Q 0.81 deleterious(0.02) benign(0.072) TCGA-VS-A953-01 15 43481428 43481428 C G CCNDBP1 Missense_Mutation p.A94G 0.55 tolerated(0.36) benign(0.329) TCGA-VS-A953-01 15 44066437 44066437 C A ELL3 Missense_Mutation p.R327S 0.25 deleterious(0) possibly_damaging(0.828) TCGA-VS-A953-01 15 51740887 51740887 C T DMXL2 3'UTR 0.45 TCGA-VS-A953-01 15 52681488 52681488 C T MYO5A Missense_Mutation p.E539K 0.33 tolerated(0.09) benign(0.053) TCGA-VS-A953-01 15 56166202 56166202 C G NEDD4 Intron 0.54 TCGA-VS-A953-01 15 65490791 65490791 C G CILP Missense_Mutation p.Q611H 0.45 tolerated(0.1) benign(0.429) TCGA-VS-A953-01 15 71341895 71341895 C T LRRC49 Missense_Mutation p.R674C 0.65 deleterious(0.02) possibly_damaging(0.828) TCGA-VS-A953-01 15 72103037 72103037 C T NR2E3 RNA 0.26 TCGA-VS-A953-01 15 74467248 74467248 C G ISLR Missense_Mutation p.Q17E 0.43 tolerated(0.98) benign(0.01) TCGA-VS-A953-01 15 74467625 74467625 C T ISLR Silent p.F142F 0.29 TCGA-VS-A953-01 15 80889609 80889609 C T ARNT2 3'UTR 0.76 TCGA-VS-A953-01 15 81296272 81296272 C T MESDC1 3'UTR 0.48 TCGA-VS-A953-01 15 90167041 90167041 C T TICRR Missense_Mutation p.S1167L 0.25 tolerated(0.07) possibly_damaging(0.733) TCGA-VS-A953-01 15 90171885 90171885 C T KIF7 Missense_Mutation p.R1266Q 0.56 deleterious(0.01) benign(0.313) TCGA-VS-A953-01 16 15609259 15609259 C T C16orf45 Silent p.V68V 0.15 TCGA-VS-A953-01 16 1961589 1961589 G A HS3ST6 3'UTR 0.26 TCGA-VS-A953-01 16 20476957 20476957 G C ACSM2A Missense_Mutation p.G99A 0.21 tolerated(0.34) benign(0.136) TCGA-VS-A953-01 16 23703635 23703635 G C ERN2 Missense_Mutation p.I754M 0.23 deleterious(0.02) probably_damaging(0.956) TCGA-VS-A953-01 16 29376027 29376027 G T SNX29P2 RNA 0.42 TCGA-VS-A953-01 16 29376277 29376277 G A SNX29P2 RNA 0.49 TCGA-VS-A953-01 16 29937409 29937409 G A KCTD13 5'UTR 0.88 TCGA-VS-A953-01 16 3434879 3434879 G C ZSCAN32 Missense_Mutation p.Q60E 0.67 tolerated(0.06) benign(0) TCGA-VS-A953-01 16 3443738 3443738 C G ZSCAN32 Intron 0.29 TCGA-VS-A953-01 16 3795276 3795276 A G CREBBP Splice_Site p.X1305_splice 0.64 TCGA-VS-A953-01 16 4827960 4827960 G C SEPT12 Missense_Mutation p.I305M 0.36 deleterious(0.01) possibly_damaging(0.812) TCGA-VS-A953-01 16 56670246 56670246 G A MT1M 3'Flank 0.12 TCGA-VS-A953-01 16 57054865 57054865 G T NLRC5 Nonsense_Mutation p.E81* 0.41 TCGA-VS-A953-01 16 57060169 57060169 C G NLRC5 Silent p.L438L 0.27 TCGA-VS-A953-01 16 57110777 57110777 G C NLRC5 Missense_Mutation p.E1600Q 0.44 tolerated(0.18) benign(0.273) TCGA-VS-A953-01 16 65005892 65005892 G A CDH11 Missense_Mutation p.A489V 0.56 deleterious(0.02) probably_damaging(0.994) TCGA-VS-A953-01 16 65345401 65345401 G A LINC00922 RNA 0.63 TCGA-VS-A953-01 16 67760046 67760046 C T RANBP10 3'UTR 0.67 TCGA-VS-A953-01 16 67860390 67860390 G A TSNAXIP1 Silent p.E388E 0.65 TCGA-VS-A953-01 16 67861390 67861390 G C TSNAXIP1 Missense_Mutation p.Q548H 0.70 tolerated(0.05) benign(0.015) TCGA-VS-A953-01 16 69338395 69338395 G C SNTB2 3'UTR 0.50 TCGA-VS-A953-01 16 71101236 71101236 C A HYDIN Nonsense_Mutation p.E678* 0.27 TCGA-VS-A953-01 16 83828889 83828889 G A CDH13 3'UTR 0.60 TCGA-VS-A953-01 16 84115383 84115383 G C MBTPS1 Missense_Mutation p.Q473E 0.44 tolerated(0.62) benign(0.007) TCGA-VS-A953-01 16 84230650 84230650 G A ADAD2 3'UTR 1.00 TCGA-VS-A953-01 16 88931264 88931264 G C PABPN1L Missense_Mutation p.I217M 0.64 deleterious(0) probably_damaging(0.948) TCGA-VS-A953-01 16 9856758 9856758 G C GRIN2A 3'UTR 0.29 TCGA-VS-A953-01 16 9934648 9934648 G A GRIN2A Nonsense_Mutation p.Q503* 0.37 TCGA-VS-A953-01 17 1631669 1631669 C T WDR81 Missense_Mutation p.S1139L 0.17 deleterious(0) probably_damaging(0.999) TCGA-VS-A953-01 17 18112463 18112463 G C ALKBH5 3'UTR 0.33 TCGA-VS-A953-01 17 19648422 19648422 G A ALDH3A1 Silent p.A7A 0.40 TCGA-VS-A953-01 17 2587565 2587565 C G PAFAH1B1 3'UTR 0.44 TCGA-VS-A953-01 17 26114738 26114738 C T NOS2 Missense_Mutation p.E145K 0.26 deleterious(0.03) possibly_damaging(0.619) TCGA-VS-A953-01 17 32483368 32483368 C T ASIC2 Missense_Mutation p.E62K 0.32 tolerated(0.36) benign(0.201) TCGA-VS-A953-01 17 33310485 33310486 - A LIG3 Frame_Shift_Ins p.I157Nfs*16 0.41 TCGA-VS-A953-01 17 3336824 3336824 G A OR1E2 Silent p.F104F 0.53 TCGA-VS-A953-01 17 34068087 34068087 C T RASL10B Silent p.I125I 0.40 TCGA-VS-A953-01 17 38554821 38554821 C A TOP2A Nonsense_Mutation p.E1176* 0.24 TCGA-VS-A953-01 17 39884450 39884450 C G HAP1 Intron 0.51 TCGA-VS-A953-01 17 40612952 40612952 C T ATP6V0A1 Nonsense_Mutation p.Q14* 0.44 TCGA-VS-A953-01 17 41953694 41953694 C G MPP2 3'UTR 0.55 TCGA-VS-A953-01 17 42474978 42474978 G A GPATCH8 Silent p.F1489F 0.49 TCGA-VS-A953-01 17 43226833 43226833 G C HEXIM1 Missense_Mutation p.Q92H 0.50 deleterious_low_confidence(0.05) benign(0.004) TCGA-VS-A953-01 17 4575444 4575444 C G PELP1 Missense_Mutation p.E948Q 0.50 unknown(0) TCGA-VS-A953-01 17 48474773 48474773 G A LRRC59 5'UTR 0.62 TCGA-VS-A953-01 17 48830794 48830794 G C LUC7L3 3'UTR 0.23 TCGA-VS-A953-01 17 55027619 55027619 C G COIL Missense_Mutation p.L328F 0.44 deleterious(0.03) benign(0.131) TCGA-VS-A953-01 17 61607706 61607706 C G KCNH6 Missense_Mutation p.H160D 0.44 tolerated(0.09) benign(0.028) TCGA-VS-A953-01 17 61766907 61766907 G A MAP3K3 Missense_Mutation p.R323K 0.55 deleterious(0.01) benign(0.366) TCGA-VS-A953-01 17 64683349 64683349 C G PRKCA Missense_Mutation p.S217C 0.48 tolerated(0.36) benign(0.013) TCGA-VS-A953-01 17 65733219 65733219 G T NOL11 Missense_Mutation p.Q392H 0.18 deleterious(0.03) benign(0.01) TCGA-VS-A953-01 17 68172174 68172174 G A KCNJ2 Missense_Mutation p.E332K 0.55 tolerated(0.78) benign(0.276) TCGA-VS-A953-01 17 68174670 68174670 G C KCNJ2 3'UTR 0.60 TCGA-VS-A953-01 17 71334920 71334920 C T SDK2 Missense_Mutation p.E2109K 0.64 deleterious(0.01) benign(0.159) TCGA-VS-A953-01 17 7224693 7224693 G C NEURL4 Missense_Mutation p.T1062S 0.12 tolerated(0.72) benign(0.104) TCGA-VS-A953-01 17 76063999 76063999 C T TNRC6C Nonsense_Mutation p.Q922* 0.40 TCGA-VS-A953-01 17 76886764 76886764 C T DDC8 Missense_Mutation p.E608K 0.48 tolerated(0.07) benign(0.432) TCGA-VS-A953-01 17 7734582 7734582 C T DNAH2 Nonsense_Mutation p.Q4137* 0.22 TCGA-VS-A953-01 17 78328227 78328227 C G RNF213 Intron 0.12 TCGA-VS-A953-01 17 78518775 78518775 C G RPTOR 5'Flank 0.14 TCGA-VS-A953-01 17 79202537 79202537 C T ENTHD2 3'UTR 0.38 TCGA-VS-A953-01 18 11851604 11851604 G A CHMP1B Missense_Mutation p.E32K 0.23 deleterious(0.02) benign(0.26) TCGA-VS-A953-01 18 18691552 18691552 G C ROCK1 5'UTR 0.11 TCGA-VS-A953-01 18 20573153 20573153 G A RBBP8 Missense_Mutation p.E455K 0.52 tolerated(0.08) possibly_damaging(0.791) TCGA-VS-A953-01 18 21594809 21594809 C T TTC39C 5'UTR 0.48 TCGA-VS-A953-01 18 2928598 2928598 G A LPIN2 Silent p.S537S 0.63 TCGA-VS-A953-01 18 40848869 40848869 G A SYT4 3'UTR 0.62 TCGA-VS-A953-01 18 44603830 44603830 G T KATNAL2 Silent p.P331P 0.32 TCGA-VS-A953-01 18 47101933 47101933 G A LIPG Missense_Mutation p.D256N 0.66 tolerated(0.28) benign(0.365) TCGA-VS-A953-01 18 56204802 56204802 C G ALPK2 Missense_Mutation p.V873L 0.08 tolerated(0.71) benign(0.001) TCGA-VS-A953-01 18 70417759 70417759 G T NETO1 Missense_Mutation p.S360Y 0.46 deleterious(0) probably_damaging(0.997) TCGA-VS-A953-01 18 9134218 9134218 C G NDUFV2 Missense_Mutation p.L231V 0.54 tolerated(0.12) possibly_damaging(0.715) TCGA-VS-A953-01 18 9258103 9258103 C T ANKRD12 Missense_Mutation p.S1613F 0.61 deleterious_low_confidence(0) possibly_damaging(0.62) TCGA-VS-A953-01 19 10416086 10416086 G C ZGLP1 Silent p.L226L 0.58 TCGA-VS-A953-01 19 1074397 1074397 C T HMHA1 Silent p.V344V 0.38 TCGA-VS-A953-01 19 110677 110677 C G OR4F17 5'UTR 0.11 TCGA-VS-A953-01 19 12059934 12059934 G C ZNF700 Missense_Mutation p.K365N 0.42 tolerated(0.07) benign(0.434) TCGA-VS-A953-01 19 12791070 12791070 G A DHPS Missense_Mutation p.P93S 0.58 tolerated(0.51) benign(0.002) TCGA-VS-A953-01 19 12800991 12800991 G C FBXW9 Intron 0.46 TCGA-VS-A953-01 19 13260954 13260954 C G STX10 Missense_Mutation p.G12R 0.07 tolerated(0.12) benign(0.057) TCGA-VS-A953-01 19 14268699 14268699 C G LPHN1 Missense_Mutation p.E849Q 0.29 tolerated(0.32) benign(0.059) TCGA-VS-A953-01 19 14772883 14772883 C T EMR3 Missense_Mutation p.A83T 0.52 tolerated(0.51) probably_damaging(0.916) TCGA-VS-A953-01 19 15124540 15124540 G A CCDC105 Missense_Mutation p.M209I 0.17 tolerated(0.07) benign(0.301) TCGA-VS-A953-01 19 15648184 15648184 C G CYP4F22 Missense_Mutation p.P127R 0.19 deleterious(0.02) probably_damaging(1) TCGA-VS-A953-01 19 16855478 16855478 C T NWD1 Missense_Mutation p.R149W 0.11 tolerated(0.29) benign(0) TCGA-VS-A953-01 19 16861046 16861046 G A NWD1 Silent p.G531G 0.09 TCGA-VS-A953-01 19 21607073 21607073 A T ZNF493 Missense_Mutation p.I538F 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-VS-A953-01 19 22363319 22363319 T A ZNF676 Missense_Mutation p.K400N 0.22 deleterious(0) probably_damaging(0.999) TCGA-VS-A953-01 19 2324161 2324161 G A LSM7 Silent p.L44L 0.45 TCGA-VS-A953-01 19 33293866 33293866 T C TDRD12 Silent p.S790S 0.14 TCGA-VS-A953-01 19 3591405 3591405 G A GIPC3 3'UTR 0.50 TCGA-VS-A953-01 19 36223168 36223168 C A KMT2B Missense_Mutation p.F1906L 0.16 possibly_damaging(0.827) TCGA-VS-A953-01 19 36270822 36270822 G A ARHGAP33 Intron 0.48 TCGA-VS-A953-01 19 36884351 36884351 C G ZFP82 Silent p.L297L 0.14 TCGA-VS-A953-01 19 37368874 37368874 G T ZNF345 Missense_Mutation p.S381I 0.42 tolerated(0.28) benign(0.331) TCGA-VS-A953-01 19 38229287 38229287 G A ZNF573 3'UTR 0.55 TCGA-VS-A953-01 19 38797556 38797556 C T YIF1B Intron 0.50 TCGA-VS-A953-01 19 39789086 39789086 C T IFNL1 Missense_Mutation p.T178M 0.20 deleterious(0.02) possibly_damaging(0.834) TCGA-VS-A953-01 19 39826106 39826106 G A GMFG Silent p.F23F 0.56 TCGA-VS-A953-01 19 41224045 41224045 G C ITPKC Missense_Mutation p.E335D 0.06 deleterious(0.02) probably_damaging(0.994) TCGA-VS-A953-01 19 41518223 41518223 G C CYP2B6 Missense_Mutation p.E329Q 0.44 deleterious(0.01) possibly_damaging(0.54) TCGA-VS-A953-01 19 42788815 42788815 G A CIC 5'Flank 0.67 TCGA-VS-A953-01 19 42795136 42795136 C G CIC Nonsense_Mutation p.S739* 0.18 TCGA-VS-A953-01 19 42796525 42796525 A G CIC Missense_Mutation p.T1028A 0.58 benign(0.002) TCGA-VS-A953-01 19 46627539 46627539 G A IGFL3 Missense_Mutation p.S22L 0.55 tolerated(0.31) benign(0.133) TCGA-VS-A953-01 19 47127120 47127120 C G PTGIR Silent p.L121L 0.60 TCGA-VS-A953-01 19 47261163 47261163 C T FKRP 3'UTR 0.42 TCGA-VS-A953-01 19 48618928 48618928 G C LIG1 Missense_Mutation p.S913C 0.33 deleterious(0.02) possibly_damaging(0.662) TCGA-VS-A953-01 19 49141289 49141289 T - CA11 3'UTR 0.30 TCGA-VS-A953-01 19 49379014 49379014 G C PPP1R15A Silent p.L603L 0.20 TCGA-VS-A953-01 19 49643026 49643026 A G PPFIA3 Silent p.R726R 0.48 TCGA-VS-A953-01 19 51021491 51021491 C T LRRC4B Silent p.E493E 0.53 TCGA-VS-A953-01 19 51129197 51129197 G C SYT3 Missense_Mutation p.I453M 0.26 deleterious(0) possibly_damaging(0.847) TCGA-VS-A953-01 19 51885803 51885803 C A LIM2 Missense_Mutation p.R107L 0.56 tolerated(0.07) probably_damaging(0.999) TCGA-VS-A953-01 19 52729220 52729220 C T PPP2R1A Silent p.L586L 0.42 TCGA-VS-A953-01 19 53854800 53854800 G C ZNF845 Missense_Mutation p.R291T 0.19 tolerated(0.1) probably_damaging(0.997) TCGA-VS-A953-01 19 54169950 54169950 C G MIR512-1 RNA 0.10 TCGA-VS-A953-01 19 54695599 54695599 G A TSEN34 Missense_Mutation p.E91K 0.43 deleterious(0.01) benign(0.376) TCGA-VS-A953-01 19 54759220 54759220 C T LILRB5 Missense_Mutation p.R294K 0.13 deleterious(0.03) possibly_damaging(0.68) TCGA-VS-A953-01 19 54966545 54966545 G C LENG8 Missense_Mutation p.G275A 0.36 tolerated(0.83) benign(0.002) TCGA-VS-A953-01 19 54972921 54972921 C G LENG8 3'UTR 0.32 TCGA-VS-A953-01 19 54973082 54973082 C G LENG8 3'UTR 0.48 TCGA-VS-A953-01 19 55264129 55264129 C T KIR2DL3 3'UTR 0.61 TCGA-VS-A953-01 19 55820057 55820057 C T BRSK1 Silent p.L714L 0.48 TCGA-VS-A953-01 19 55823281 55823281 G A BRSK1 Missense_Mutation p.E728K 0.21 deleterious_low_confidence(0.02) benign(0.124) TCGA-VS-A953-01 19 5623289 5623289 G A SAFB Missense_Mutation p.E25K 0.58 deleterious(0) probably_damaging(0.993) TCGA-VS-A953-01 19 5623345 5623345 G A SAFB Silent p.L43L 0.53 TCGA-VS-A953-01 19 58095903 58095903 G A ZIK1 Intron 0.51 TCGA-VS-A953-01 19 5843766 5843766 C G FUT3 Nonstop_Mutation p.*362Sext*105 0.40 TCGA-VS-A953-01 19 7681419 7681419 G A CAMSAP3 Silent p.L1068L 0.41 TCGA-VS-A953-01 19 7806502 7806502 G A CD209 3'UTR 0.18 TCGA-VS-A953-01 19 806547 806547 C G PTBP1 Silent p.L370L 0.34 TCGA-VS-A953-01 19 9002602 9002602 C G MUC16 Missense_Mutation p.G13405A 0.53 probably_damaging(0.994) TCGA-VS-A953-01 1 103342959 103342959 T G COL11A1 3'UTR 0.19 TCGA-VS-A953-01 1 10335485 10335485 G A KIF1B Splice_Site p.X289_splice 0.49 TCGA-VS-A953-01 1 10439147 10439147 G A KIF1B 3'Flank 0.43 TCGA-VS-A953-01 1 110207824 110207824 G C GSTM4 3'Flank 0.31 TCGA-VS-A953-01 1 1111750 1111750 G C TTLL10 Intron 0.40 TCGA-VS-A953-01 1 113202347 113202347 G A CAPZA1 Nonsense_Mutation p.W177* 0.36 TCGA-VS-A953-01 1 1139563 1139563 G C TNFRSF18 Intron 0.47 TCGA-VS-A953-01 1 114936248 114936248 G C TRIM33 3'UTR 0.41 TCGA-VS-A953-01 1 1356360 1356360 C G ANKRD65 Missense_Mutation p.R9T 0.29 tolerated(0.7) unknown(0) TCGA-VS-A953-01 1 1356367 1356367 C G ANKRD65 Missense_Mutation p.E7Q 0.28 tolerated(0.53) unknown(0) TCGA-VS-A953-01 1 144951980 144951980 C G PDE4DIP Intron 0.16 TCGA-VS-A953-01 1 144952024 144952024 C T PDE4DIP Intron 0.17 TCGA-VS-A953-01 1 144952344 144952344 C T PDE4DIP Silent p.R125R 0.19 TCGA-VS-A953-01 1 145109606 145109606 G A SEC22B RNA 0.11 TCGA-VS-A953-01 1 145293183 145293183 C T NBPF10 5'Flank 0.19 TCGA-VS-A953-01 1 149884807 149884807 C A SV2A Missense_Mutation p.D196Y 0.12 deleterious(0) probably_damaging(1) TCGA-VS-A953-01 1 150527096 150527096 G C ADAMTSL4 Intron 0.42 TCGA-VS-A953-01 1 152324815 152324815 G A FLG2 Missense_Mutation p.S1816L 0.24 probably_damaging(0.998) TCGA-VS-A953-01 1 153931931 153931931 G A SLC39A1 3'UTR 0.54 TCGA-VS-A953-01 1 155291048 155291048 C T RUSC1 Intron 0.52 TCGA-VS-A953-01 1 155291816 155291816 G A RUSC1 Silent p.R84R 0.44 TCGA-VS-A953-01 1 15650971 15650971 T C FHAD1 Intron 0.08 TCGA-VS-A953-01 1 156552196 156552196 G C TTC24 Missense_Mutation p.E294Q 0.28 tolerated(0.17) benign(0.16) TCGA-VS-A953-01 1 159021622 159021622 G C IFI16 Missense_Mutation p.E551Q 0.42 tolerated(0.15) benign(0.195) TCGA-VS-A953-01 1 159175759 159175759 C A DARC Missense_Mutation p.A179D 0.38 deleterious(0) possibly_damaging(0.798) TCGA-VS-A953-01 1 160851931 160851931 G A ITLN1 Missense_Mutation p.S74F 0.48 deleterious(0) possibly_damaging(0.84) TCGA-VS-A953-01 1 16199609 16199609 C T SPEN Missense_Mutation p.R128C 0.47 probably_damaging(0.997) TCGA-VS-A953-01 1 168044968 168044968 G A DCAF6 3'UTR 0.14 TCGA-VS-A953-01 1 169390884 169390884 G C CCDC181 Missense_Mutation p.S262C 0.48 tolerated(0.23) possibly_damaging(0.849) TCGA-VS-A953-01 1 186370435 186370435 G A OCLM 3'UTR 0.45 TCGA-VS-A953-01 1 186925255 186925255 G C PLA2G4A Missense_Mutation p.G453A 0.14 tolerated(0.5) benign(0.001) TCGA-VS-A953-01 1 202864836 202864836 G A KLHL12 Missense_Mutation p.R317C 0.74 deleterious(0) possibly_damaging(0.61) TCGA-VS-A953-01 1 228434441 228434441 G C OBSCN Missense_Mutation p.D1416H 0.42 probably_damaging(1) TCGA-VS-A953-01 1 237777619 237777619 G C RYR2 Missense_Mutation p.E1731Q 0.35 benign(0.005) TCGA-VS-A953-01 1 2452605 2452605 G A PANK4 Silent p.V119V 0.33 TCGA-VS-A953-01 1 248039820 248039820 G A TRIM58 3'UTR 0.40 TCGA-VS-A953-01 1 2530102 2530102 T A MMEL1 Missense_Mutation p.Y390F 0.16 deleterious(0.05) benign(0.099) TCGA-VS-A953-01 1 26646895 26646895 C T CD52 3'UTR 0.64 TCGA-VS-A953-01 1 27087409 27087409 G A ARID1A Silent p.V661V 0.34 TCGA-VS-A953-01 1 27189880 27189880 G C SFN Missense_Mutation p.W59C 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VS-A953-01 1 32706753 32706753 G C MTMR9LP RNA 0.29 TCGA-VS-A953-01 1 3348546 3348546 G A PRDM16 Missense_Mutation p.E1180K 0.51 tolerated(0.4) benign(0.018) TCGA-VS-A953-01 1 3412554 3412554 G C MEGF6 Missense_Mutation p.N1257K 0.21 deleterious(0.02) benign(0.027) TCGA-VS-A953-01 1 35928257 35928257 G C KIAA0319L Missense_Mutation p.S420C 0.52 deleterious(0) possibly_damaging(0.89) TCGA-VS-A953-01 1 36888966 36888966 G A OSCP1 Silent p.I206I 0.29 TCGA-VS-A953-01 1 37961510 37961510 C G MEAF6 Silent p.L191L 0.41 TCGA-VS-A953-01 1 38230713 38230713 G A EPHA10 Missense_Mutation p.P9L 0.24 tolerated(0.1) benign(0.098) TCGA-VS-A953-01 1 41300741 41300741 G A KCNQ4 Missense_Mutation p.M572I 0.60 deleterious(0) probably_damaging(0.997) TCGA-VS-A953-01 1 41300756 41300756 G C KCNQ4 Missense_Mutation p.K577N 0.62 deleterious(0) probably_damaging(1) TCGA-VS-A953-01 1 43815017 43815017 C T MPL Missense_Mutation p.P518S 0.43 deleterious(0.04) probably_damaging(0.992) TCGA-VS-A953-01 1 44170632 44170632 G C KDM4A 3'UTR 0.15 TCGA-VS-A953-01 1 45812731 45812731 C T TESK2 Missense_Mutation p.D238N 0.45 deleterious(0) probably_damaging(0.99) TCGA-VS-A953-01 1 55181577 55181577 C G TTC4 5'UTR 0.07 TCGA-VS-A953-01 1 5969253 5969253 G A NPHP4 Nonsense_Mutation p.R488* 0.61 TCGA-VS-A953-01 1 78392560 78392560 G C NEXN Missense_Mutation p.E283Q 0.14 deleterious(0.01) possibly_damaging(0.694) TCGA-VS-A953-01 1 9011580 9011580 G C CA6 Intron 0.18 TCGA-VS-A953-01 1 9011661 9011661 G A CA6 Intron 0.38 TCGA-VS-A953-01 1 9011682 9011682 G A CA6 Intron 0.43 TCGA-VS-A953-01 1 91404015 91404015 G A ZNF644 Missense_Mutation p.P966S 0.16 deleterious(0) probably_damaging(1) TCGA-VS-A953-01 20 13976296 13976296 C G MACROD2 5'UTR 0.65 TCGA-VS-A953-01 20 18297395 18297395 C T ZNF133 Silent p.L633L 0.28 TCGA-VS-A953-01 20 20180463 20180463 C T C20orf26 Missense_Mutation p.P617S 0.62 deleterious(0) probably_damaging(0.999) TCGA-VS-A953-01 20 20349363 20349363 G A INSM1 Missense_Mutation p.G151E 0.31 deleterious(0.02) probably_damaging(0.931) TCGA-VS-A953-01 20 24646879 24646879 C A SYNDIG1 3'UTR 0.28 TCGA-VS-A953-01 20 25755332 25755332 C T FAM182B 3'UTR 0.12 TCGA-VS-A953-01 20 31671519 31671519 G A BPIFB4 Silent p.L172L 0.18 TCGA-VS-A953-01 20 3175503 3175503 G A DDRGK1 Silent p.F215F 0.24 TCGA-VS-A953-01 20 33711760 33711760 G A EDEM2 Silent p.L349L 0.54 TCGA-VS-A953-01 20 34067836 34067836 G A CEP250 Missense_Mutation p.E818K 0.64 possibly_damaging(0.615) TCGA-VS-A953-01 20 34778291 34778291 C T EPB41L1 Silent p.F373F 0.24 TCGA-VS-A953-01 20 3730797 3730797 C G HSPA12B Missense_Mutation p.I408M 0.10 deleterious(0) probably_damaging(0.955) TCGA-VS-A953-01 20 3765519 3765519 C G CENPB Missense_Mutation p.E538Q 0.64 deleterious_low_confidence(0.02) probably_damaging(0.913) TCGA-VS-A953-01 20 3897596 3897596 G A PANK2 Missense_Mutation p.E479K 0.09 tolerated(0.13) benign(0.022) TCGA-VS-A953-01 20 43723400 43723400 C G KCNS1 3'UTR 0.15 TCGA-VS-A953-01 20 43881665 43881665 T C SLPI Silent p.K124K 0.13 TCGA-VS-A953-01 20 5100246 5100246 C G PCNA Missense_Mutation p.A67P 0.13 tolerated(0.21) possibly_damaging(0.497) TCGA-VS-A953-01 20 56179329 56179329 G A ZBP1 3'UTR 0.39 TCGA-VS-A953-01 20 60790382 60790382 G C HRH3 3'UTR 0.34 TCGA-VS-A953-01 20 60790553 60790553 G A HRH3 3'UTR 0.53 TCGA-VS-A953-01 20 60869352 60869352 G C OSBPL2 3'UTR 0.29 TCGA-VS-A953-01 20 60892739 60892739 G A LAMA5 Silent p.H2445H 0.32 TCGA-VS-A953-01 21 11021119 11021119 A T BAGE2 RNA 0.04 TCGA-VS-A953-01 21 31852534 31852534 G A KRTAP19-1 Missense_Mutation p.R35W 0.18 deleterious_low_confidence(0.02) unknown(0) TCGA-VS-A953-01 21 34635620 34635620 G C IFNAR2 Missense_Mutation p.E455Q 0.17 deleterious(0.04) possibly_damaging(0.528) TCGA-VS-A953-01 21 40177228 40177228 G C ETS2 5'Flank 0.35 TCGA-VS-A953-01 21 43412618 43412618 C T ZBTB21 Silent p.L529L 0.49 TCGA-VS-A953-01 21 44000586 44000586 C T SLC37A1 3'UTR 0.55 TCGA-VS-A953-01 21 45397999 45397999 G C AGPAT3 Missense_Mutation p.E280D 0.14 deleterious(0.02) benign(0.031) TCGA-VS-A953-01 21 45811152 45811152 C G TRPM2 Intron 0.32 TCGA-VS-A953-01 21 45876704 45876704 C T LRRC3 Silent p.P59P 0.23 TCGA-VS-A953-01 21 47754526 47754526 C T PCNT Silent p.V161V 0.19 TCGA-VS-A953-01 22 18778733 18778733 C T GGT3P RNA 0.12 TCGA-VS-A953-01 22 21377627 21377627 C T P2RX6 Silent p.F234F 0.45 TCGA-VS-A953-01 22 25150027 25150027 G A PIWIL3 Nonsense_Mutation p.R311* 0.20 TCGA-VS-A953-01 22 31090259 31090259 C T OSBP2 5'Flank 0.53 TCGA-VS-A953-01 22 32621797 32621797 G C SLC5A4 Missense_Mutation p.L432V 0.07 tolerated(1) benign(0.014) TCGA-VS-A953-01 22 36177683 36177683 G A RBFOX2 Silent p.F191F 0.21 TCGA-VS-A953-01 22 37627389 37627389 G A RAC2 Silent p.I110I 0.43 TCGA-VS-A953-01 22 41738593 41738593 G A ZC3H7B Missense_Mutation p.E420K 0.62 deleterious(0.01) possibly_damaging(0.802) TCGA-VS-A953-01 22 41754934 41754934 G A ZC3H7B 3'UTR 0.67 TCGA-VS-A953-01 22 43576745 43576745 C T TTLL12 Intron 0.54 TCGA-VS-A953-01 22 45127638 45127638 G A PRR5 Silent p.E140E 0.17 TCGA-VS-A953-01 22 46751382 46751382 G A TRMU Silent p.L305L 0.50 TCGA-VS-A953-01 22 50664277 50664277 G A TUBGCP6 Silent p.Y643Y 0.26 TCGA-VS-A953-01 22 50988059 50988059 C T KLHDC7B Silent p.I488I 0.28 TCGA-VS-A953-01 2 106690339 106690339 C T C2orf40 Intron 0.40 TCGA-VS-A953-01 2 128075301 128075301 C T MAP3K2 Silent p.L410L 0.76 TCGA-VS-A953-01 2 131099700 131099700 G A CCDC115 5'UTR 0.24 TCGA-VS-A953-01 2 152531842 152531842 G A NEB Nonsense_Mutation p.Q1280* 0.28 TCGA-VS-A953-01 2 210893666 210893666 C T KANSL1L Missense_Mutation p.E767K 0.45 deleterious(0) probably_damaging(0.957) TCGA-VS-A953-01 2 21230299 21230299 C T APOB Silent p.L3147L 0.18 TCGA-VS-A953-01 2 215976381 215976381 G A ABCA12 Silent p.V34V 0.19 TCGA-VS-A953-01 2 222301142 222301142 G T EPHA4 Missense_Mutation p.P775T 0.30 deleterious(0.03) probably_damaging(0.966) TCGA-VS-A953-01 2 226447262 226447262 G A NYAP2 Missense_Mutation p.G377R 0.50 deleterious(0.01) probably_damaging(0.944) TCGA-VS-A953-01 2 241405572 241405572 G C GPC1 Missense_Mutation p.L514F 0.24 tolerated(0.05) possibly_damaging(0.88) TCGA-VS-A953-01 2 241697009 241697009 G A KIF1A Missense_Mutation p.S862L 0.27 deleterious(0.01) benign(0.005) TCGA-VS-A953-01 2 24277376 24277376 A G FKBP1B Intron 0.57 TCGA-VS-A953-01 2 26672953 26672953 C T DRC1 Silent p.S533S 0.35 TCGA-VS-A953-01 2 27157528 27157528 G A DPYSL5 Silent p.A291A 0.30 TCGA-VS-A953-01 2 27565736 27565736 C G GTF3C2 Missense_Mutation p.E176Q 0.71 deleterious(0.04) probably_damaging(0.995) TCGA-VS-A953-01 2 32515583 32515583 C G YIPF4 Silent p.V37V 0.67 TCGA-VS-A953-01 2 38978406 38978406 G C SRSF7 5'UTR 0.31 TCGA-VS-A953-01 2 44457627 44457627 A T PPM1B Missense_Mutation p.R404W 0.70 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-VS-A953-01 2 44513066 44513066 C T SLC3A1 Intron 0.54 TCGA-VS-A953-01 2 45616609 45616609 G C SRBD1 Missense_Mutation p.S943C 0.45 tolerated(0.06) possibly_damaging(0.676) TCGA-VS-A953-01 2 48602905 48602905 G A FOXN2 3'UTR 0.24 TCGA-VS-A953-01 2 49247229 49247229 C T FSHR Missense_Mutation p.E99K 0.72 deleterious(0.01) possibly_damaging(0.712) TCGA-VS-A953-01 2 55582757 55582757 A G CCDC88A Missense_Mutation p.L253P 0.32 deleterious(0) probably_damaging(0.997) TCGA-VS-A953-01 2 61721184 61721184 C T XPO1 Missense_Mutation p.E364K 0.11 deleterious(0) probably_damaging(0.981) TCGA-VS-A953-01 2 63272673 63272673 G A EHBP1 3'UTR 0.40 TCGA-VS-A953-01 2 63349191 63349191 C T WDPCP Missense_Mutation p.E731K 0.25 tolerated(0.07) benign(0.001) TCGA-VS-A953-01 2 74699716 74699716 C A MRPL53 Missense_Mutation p.E24D 0.53 tolerated(0.08) possibly_damaging(0.583) TCGA-VS-A953-01 2 75107621 75107621 C T HK2 Silent p.L499L 0.24 TCGA-VS-A953-01 2 97166350 97166350 C T NEURL3 RNA 0.33 TCGA-VS-A953-01 2 99413858 99413858 C T KIAA1211L Silent p.L853L 0.44 TCGA-VS-A953-01 3 100119658 100119658 C G TOMM70A Missense_Mutation p.G46R 0.30 deleterious(0) benign(0.195) TCGA-VS-A953-01 3 11058892 11058892 C T SLC6A1 5'UTR 0.12 TCGA-VS-A953-01 3 12225710 12225710 G A SYN2 RNA 0.35 TCGA-VS-A953-01 3 122646674 122646674 C T SEMA5B Silent p.P325P 0.17 TCGA-VS-A953-01 3 126189793 126189793 C G ZXDC Silent p.L405L 0.12 TCGA-VS-A953-01 3 129170770 129170770 C G IFT122 Missense_Mutation p.S41C 0.17 deleterious(0.01) possibly_damaging(0.673) TCGA-VS-A953-01 3 132211295 132211295 G A DNAJC13 Missense_Mutation p.D1221N 0.15 deleterious(0) probably_damaging(0.991) TCGA-VS-A953-01 3 13417804 13417804 G A NUP210 Missense_Mutation p.S427F 0.45 deleterious(0.01) possibly_damaging(0.862) TCGA-VS-A953-01 3 138724951 138724951 C T PRR23A Missense_Mutation p.V54M 0.43 deleterious(0.03) benign(0.066) TCGA-VS-A953-01 3 139093370 139093370 G A COPB2 Missense_Mutation p.H238Y 0.16 deleterious(0.04) probably_damaging(0.992) TCGA-VS-A953-01 3 141497728 141497728 G A GRK7 Missense_Mutation p.G201D 0.58 deleterious(0) probably_damaging(0.987) TCGA-VS-A953-01 3 14183984 14183984 G C TMEM43 3'UTR 0.54 TCGA-VS-A953-01 3 142075895 142075895 G C XRN1 Silent p.R1177R 0.12 TCGA-VS-A953-01 3 142144273 142144273 C T XRN1 Missense_Mutation p.E172K 0.17 deleterious(0) possibly_damaging(0.507) TCGA-VS-A953-01 3 142218524 142218524 C T ATR Silent p.V1775V 0.19 TCGA-VS-A953-01 3 142503708 142503708 C T TRPC1 Nonsense_Mutation p.Q375* 0.13 TCGA-VS-A953-01 3 143709604 143709604 C G C3orf58 3'UTR 0.21 TCGA-VS-A953-01 3 146234856 146234856 G C PLSCR1 Missense_Mutation p.I279M 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-VS-A953-01 3 160151667 160151667 G A SMC4 3'UTR 0.25 TCGA-VS-A953-01 3 183906083 183906083 G C ABCF3 Missense_Mutation p.E242Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-VS-A953-01 3 183957717 183957717 G C VWA5B2 Missense_Mutation p.R878T 0.24 deleterious(0.04) benign(0.066) TCGA-VS-A953-01 3 184020269 184020269 C T PSMD2 Silent p.L272L 0.37 TCGA-VS-A953-01 3 188593357 188593357 G C LPP 3'UTR 0.39 TCGA-VS-A953-01 3 188593362 188593362 G A LPP 3'UTR 0.41 TCGA-VS-A953-01 3 195295997 195295997 G A APOD Missense_Mutation p.S115L 0.27 tolerated(0.57) benign(0.026) TCGA-VS-A953-01 3 196556039 196556039 G A PAK2 3'UTR 0.27 TCGA-VS-A953-01 3 33626325 33626325 T C CLASP2 Missense_Mutation p.N720S 0.47 tolerated(1) benign(0.001) TCGA-VS-A953-01 3 37360683 37360683 C T GOLGA4 Missense_Mutation p.L537F 0.35 probably_damaging(0.999) TCGA-VS-A953-01 3 43743771 43743771 G A ABHD5 Silent p.L66L 0.09 TCGA-VS-A953-01 3 44606983 44606983 C T ZKSCAN7 Missense_Mutation p.S143L 0.49 tolerated(0.29) benign(0.009) TCGA-VS-A953-01 3 47098345 47098345 G C SETD2 Nonsense_Mutation p.S2310* 0.47 TCGA-VS-A953-01 3 48900089 48900089 G C SLC25A20 Missense_Mutation p.Q141E 0.47 deleterious(0) probably_damaging(0.967) TCGA-VS-A953-01 3 49166115 49166115 C A LAMB2 Silent p.L623L 0.31 TCGA-VS-A953-01 3 49365244 49365244 C T USP4 Missense_Mutation p.E79K 0.48 tolerated(0.36) benign(0.003) TCGA-VS-A953-01 3 52291349 52291349 C G WDR82 3'UTR 0.22 TCGA-VS-A953-01 3 6903376 6903376 C A GRM7 Missense_Mutation p.L101M 0.37 deleterious(0) probably_damaging(0.999) TCGA-VS-A953-01 3 89259312 89259312 C T EPHA3 Silent p.F152F 0.43 TCGA-VS-A953-01 4 107016699 107016699 G A TBCK Silent p.L837L 0.29 TCGA-VS-A953-01 4 111398166 111398166 C T ENPEP Missense_Mutation p.S199F 0.59 deleterious(0) probably_damaging(0.994) TCGA-VS-A953-01 4 114275167 114275167 C T ANK2 Missense_Mutation p.P1798L 0.26 benign(0.209) TCGA-VS-A953-01 4 114278031 114278031 G A ANK2 Missense_Mutation p.E2753K 0.50 benign(0.062) TCGA-VS-A953-01 4 119554360 119554360 G A RP11-384K6.6 RNA 0.30 TCGA-VS-A953-01 4 1205385 1205385 C T CTBP1 3'UTR 0.62 TCGA-VS-A953-01 4 126411801 126411801 C T FAT4 Silent p.A4608A 0.47 TCGA-VS-A953-01 4 128886258 128886258 C T MFSD8 Missense_Mutation p.E11K 0.48 tolerated(0.35) benign(0.08) TCGA-VS-A953-01 4 177604984 177604984 G A VEGFC 3'UTR 0.44 TCGA-VS-A953-01 4 183674695 183674695 G C TENM3 Missense_Mutation p.G1319R 0.13 deleterious(0) benign(0.136) TCGA-VS-A953-01 4 186544638 186544638 G A SORBS2 Missense_Mutation p.H745Y 0.50 tolerated(0.09) probably_damaging(0.993) TCGA-VS-A953-01 4 187208902 187208902 G C F11 Missense_Mutation p.K547N 0.44 tolerated(0.21) benign(0.021) TCGA-VS-A953-01 4 189012939 189012939 G A TRIML2 Missense_Mutation p.S251L 0.44 deleterious(0.03) possibly_damaging(0.822) TCGA-VS-A953-01 4 25258243 25258243 G C PI4K2B Missense_Mutation p.E235Q 0.39 tolerated(0.09) benign(0.236) TCGA-VS-A953-01 4 25667772 25667772 C T SLC34A2 Silent p.F134F 0.36 TCGA-VS-A953-01 4 27024317 27024317 C G STIM2 Missense_Mutation p.S655C 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.884) TCGA-VS-A953-01 4 27024679 27024679 C T STIM2 3'UTR 0.42 TCGA-VS-A953-01 4 39310281 39310281 C T RFC1 Silent p.K620K 0.50 TCGA-VS-A953-01 4 6107262 6107262 G C JAKMIP1 Missense_Mutation p.Q188E 0.30 tolerated(0.19) possibly_damaging(0.832) TCGA-VS-A953-01 4 68379961 68379961 G A CENPC Silent p.F425F 0.44 TCGA-VS-A953-01 4 7032376 7032376 G A TBC1D14 3'UTR 0.44 TCGA-VS-A953-01 4 72436125 72436125 C G SLC4A4 3'UTR 0.17 TCGA-VS-A953-01 4 763092 763092 C T PCGF3 3'UTR 0.50 TCGA-VS-A953-01 4 84384048 84384048 C T FAM175A Silent p.K268K 0.26 TCGA-VS-A953-01 4 95223317 95223317 C T HPGDS Missense_Mutation p.E139K 0.40 tolerated(0.61) benign(0.01) TCGA-VS-A953-01 5 126674906 126674906 C T MEGF10 Missense_Mutation p.R71W 0.20 deleterious(0) possibly_damaging(0.792) TCGA-VS-A953-01 5 128864210 128864210 C A ADAMTS19 Intron 0.46 TCGA-VS-A953-01 5 137844421 137844421 C G ETF1 Missense_Mutation p.E390Q 0.12 tolerated(0.07) possibly_damaging(0.896) TCGA-VS-A953-01 5 138727917 138727917 G A PROB1 Silent p.L952L 0.52 TCGA-VS-A953-01 5 139493935 139493935 G T PURA Nonsense_Mutation p.E57* 0.55 TCGA-VS-A953-01 5 140476567 140476567 G C PCDHB2 Missense_Mutation p.E731D 0.14 tolerated_low_confidence(0.08) benign(0.018) TCGA-VS-A953-01 5 140554595 140554595 G C PCDHB7 Missense_Mutation p.E727Q 0.35 deleterious_low_confidence(0.01) benign(0.142) TCGA-VS-A953-01 5 140784877 140784877 G A PCDHGA9 Silent p.E786E 0.36 TCGA-VS-A953-01 5 141020046 141020046 C G FCHSD1 3'UTR 0.46 TCGA-VS-A953-01 5 154256200 154256200 G A CNOT8 3'UTR 0.37 TCGA-VS-A953-01 5 159546332 159546332 C T PWWP2A Missense_Mutation p.E22K 0.67 deleterious_low_confidence(0) unknown(0) TCGA-VS-A953-01 5 16473643 16473643 G C FAM134B 3'UTR 0.29 TCGA-VS-A953-01 5 167474555 167474555 G A TENM2 Splice_Site p.X437_splice 0.11 TCGA-VS-A953-01 5 169675817 169675817 G A LCP2 Silent p.L496L 0.51 TCGA-VS-A953-01 5 170737244 170737244 C G TLX3 Missense_Mutation p.T171R 0.49 deleterious(0) possibly_damaging(0.515) TCGA-VS-A953-01 5 175936744 175936744 G A FAF2 3'UTR 0.49 TCGA-VS-A953-01 5 180432687 180432687 C T BTNL3 Nonsense_Mutation p.R406* 0.09 TCGA-VS-A953-01 5 32088343 32088343 G C PDZD2 Missense_Mutation p.E1597Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-VS-A953-01 5 37158338 37158338 T G C5orf42 Silent p.T2600T 0.09 TCGA-VS-A953-01 5 38933325 38933325 G A OSMR Missense_Mutation p.E907K 0.44 deleterious(0.02) probably_damaging(0.931) TCGA-VS-A953-01 5 54923724 54923724 G A SLC38A9 Silent p.I505I 0.06 TCGA-VS-A953-01 5 59983036 59983036 G T DEPDC1B Missense_Mutation p.L23I 0.46 tolerated(0.1) possibly_damaging(0.886) TCGA-VS-A953-01 5 63507942 63507942 G C RNF180 Missense_Mutation p.M62I 0.41 tolerated(0.06) benign(0.005) TCGA-VS-A953-01 5 65350661 65350661 G C ERBB2IP Missense_Mutation p.R1172T 0.41 deleterious(0) possibly_damaging(0.821) TCGA-VS-A953-01 5 78329216 78329216 G A DMGDH Silent p.H403H 0.48 TCGA-VS-A953-01 5 81354410 81354410 C G ATG10 Missense_Mutation p.L69V 0.11 tolerated(0.18) benign(0.073) TCGA-VS-A953-01 5 89968401 89968401 G A GPR98 Silent p.E1597E 0.56 TCGA-VS-A953-01 5 95726583 95726583 G T PCSK1 3'UTR 0.42 TCGA-VS-A953-01 6 109002551 109002551 T G FOXO3 3'UTR 0.09 TCGA-VS-A953-01 6 109578840 109578840 G A C6orf183 RNA 0.28 TCGA-VS-A953-01 6 111654484 111654484 C T REV3L Missense_Mutation p.M2589I 0.33 deleterious(0.01) possibly_damaging(0.808) TCGA-VS-A953-01 6 125284291 125284291 C G RP11-510H23.1 5'Flank 0.12 TCGA-VS-A953-01 6 13470109 13470109 T A AL583828.1 Missense_Mutation p.E135V 0.97 possibly_damaging(0.607) TCGA-VS-A953-01 6 145095454 145095454 C G UTRN Silent p.A2862A 0.15 TCGA-VS-A953-01 6 146678770 146678770 G A GRM1 Missense_Mutation p.M514I 0.19 tolerated(0.47) benign(0.005) TCGA-VS-A953-01 6 148664267 148664267 G A SASH1 Missense_Mutation p.E22K 0.58 deleterious_low_confidence(0.03) unknown(0) TCGA-VS-A953-01 6 152642861 152642861 G A SYNE1 Missense_Mutation p.L5360F 0.59 benign(0.267) TCGA-VS-A953-01 6 152780059 152780059 C A SYNE1 Nonsense_Mutation p.E801* 0.36 TCGA-VS-A953-01 6 153296211 153296211 G A FBXO5 Missense_Mutation p.R217W 0.11 tolerated(0.17) benign(0.001) TCGA-VS-A953-01 6 157528542 157528542 C A ARID1B Silent p.L2089L 0.20 TCGA-VS-A953-01 6 160500669 160500669 G C IGF2R Missense_Mutation p.E1846Q 0.07 tolerated(0.56) benign(0.005) TCGA-VS-A953-01 6 166571975 166571975 G A T Missense_Mutation p.S379F 0.55 tolerated(0.08) benign(0.372) TCGA-VS-A953-01 6 166836882 166836882 C T RPS6KA2 Silent p.P543P 0.13 TCGA-VS-A953-01 6 27806649 27806649 C T HIST1H2BN Silent p.I70I 0.30 TCGA-VS-A953-01 6 29591088 29591088 G C GABBR1 Missense_Mutation p.F319L 0.22 deleterious(0.03) possibly_damaging(0.814) TCGA-VS-A953-01 6 30042997 30042997 C T RNF39 Intron 0.67 TCGA-VS-A953-01 6 30043046 30043046 C T RNF39 Missense_Mutation p.R174Q 0.67 tolerated(0.2) possibly_damaging(0.559) TCGA-VS-A953-01 6 30298632 30298632 G A TRIM39 Silent p.E176E 0.40 TCGA-VS-A953-01 6 30585672 30585672 G A MRPS18B Silent p.L10L 0.36 TCGA-VS-A953-01 6 3106280 3106280 C T RIPK1 Missense_Mutation p.P524L 0.11 tolerated(0.12) benign(0.001) TCGA-VS-A953-01 6 33153480 33153480 G C COL11A2 Intron 0.52 TCGA-VS-A953-01 6 33359686 33359686 G A KIFC1 5'UTR 0.43 TCGA-VS-A953-01 6 35911937 35911937 C T SLC26A8 Missense_Mutation p.E885K 0.35 tolerated_low_confidence(0.08) benign(0) TCGA-VS-A953-01 6 39311497 39311497 G A KIF6 Silent p.L806L 0.30 TCGA-VS-A953-01 6 42631024 42631024 C G UBR2 Missense_Mutation p.Q1189E 0.21 deleterious(0.01) possibly_damaging(0.519) TCGA-VS-A953-01 6 43013730 43013730 G A CUL7 Silent p.L1004L 0.25 TCGA-VS-A953-01 6 47199307 47199307 G A TNFRSF21 3'UTR 0.58 TCGA-VS-A953-01 6 47200316 47200316 G C TNFRSF21 3'UTR 0.52 TCGA-VS-A953-01 6 52441657 52441657 G C TRAM2 Missense_Mutation p.I19M 0.11 deleterious(0) probably_damaging(0.994) TCGA-VS-A953-01 6 56035602 56035602 C T COL21A1 Missense_Mutation p.V291I 0.18 tolerated(0.38) benign(0.023) TCGA-VS-A953-01 6 56716267 56716267 C G RP11-472M19.2 Intron 0.29 TCGA-VS-A953-01 6 69345779 69345779 A - BAI3 5'UTR 0.12 TCGA-VS-A953-01 6 79735233 79735233 G A PHIP Intron 0.62 TCGA-VS-A953-01 6 85447102 85447102 G C TBX18 Silent p.L375L 0.25 TCGA-VS-A953-01 6 88763687 88763687 G C SPACA1 Missense_Mutation p.E78Q 0.33 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-VS-A953-01 6 93951928 93951928 T C EPHA7 3'UTR 0.43 TCGA-VS-A953-01 7 100201070 100201070 G C PCOLCE Missense_Mutation p.G38A 0.64 deleterious(0) probably_damaging(1) TCGA-VS-A953-01 7 100649835 100649835 C G MUC12 Missense_Mutation p.L5014V 0.34 possibly_damaging(0.578) TCGA-VS-A953-01 7 116544284 116544284 G C CAPZA2 Missense_Mutation p.K91N 0.26 deleterious(0.01) possibly_damaging(0.58) TCGA-VS-A953-01 7 117431898 117431898 C G CTTNBP2 Missense_Mutation p.R451T 0.21 deleterious(0) probably_damaging(0.928) TCGA-VS-A953-01 7 12270742 12270742 G A TMEM106B Splice_Site p.X229_splice 0.41 TCGA-VS-A953-01 7 131241096 131241096 G A PODXL Missense_Mutation p.S8L 0.42 deleterious_low_confidence(0) unknown(0) TCGA-VS-A953-01 7 138329587 138329587 T C SVOPL Missense_Mutation p.I222V 0.54 tolerated(0.05) benign(0.163) TCGA-VS-A953-01 7 142458521 142458521 C T PRSS1 Silent p.L52L 0.30 TCGA-VS-A953-01 7 148809326 148809326 G C ZNF425 Missense_Mutation p.I69M 0.56 deleterious(0.03) benign(0.347) TCGA-VS-A953-01 7 148921658 148921658 C A ZNF282 Silent p.L645L 0.20 TCGA-VS-A953-01 7 149497427 149497427 G A SSPO RNA 0.22 TCGA-VS-A953-01 7 150218119 150218119 C T GIMAP7 3'UTR 0.41 TCGA-VS-A953-01 7 150644798 150644798 C A KCNH2 Missense_Mutation p.R954L 0.50 tolerated(0.28) benign(0.24) TCGA-VS-A953-01 7 150737370 150737370 C G ABCB8 Silent p.L411L 0.45 TCGA-VS-A953-01 7 150929943 150929943 C G CHPF2 5'UTR 0.25 TCGA-VS-A953-01 7 29963722 29963722 G A SCRN1 Missense_Mutation p.R386C 0.33 deleterious(0) possibly_damaging(0.513) TCGA-VS-A953-01 7 38259249 38259249 G A STARD3NL Missense_Mutation p.E213K 0.60 deleterious(0) probably_damaging(0.995) TCGA-VS-A953-01 7 44579753 44579753 G C NPC1L1 Silent p.L81L 0.67 TCGA-VS-A953-01 7 4794948 4794948 G C FOXK1 Silent p.L328L 0.41 TCGA-VS-A953-01 7 51111238 51111238 G A COBL Silent p.I416I 0.18 TCGA-VS-A953-01 7 56151003 56151003 G A PHKG1 Missense_Mutation p.S204F 0.48 deleterious(0) probably_damaging(0.945) TCGA-VS-A953-01 7 57529433 57529433 C T ZNF716 Silent p.T422T 0.58 TCGA-VS-A953-01 7 72855659 72855659 A C BAZ1B 3'UTR 0.30 TCGA-VS-A953-01 7 7622969 7622969 C G MIOS Missense_Mutation p.I538M 0.18 deleterious(0) probably_damaging(0.997) TCGA-VS-A953-01 7 86824966 86824966 C T DMTF1 3'UTR 0.12 TCGA-VS-A953-01 7 92244196 92244196 C T CDK6 3'UTR 0.52 TCGA-VS-A953-01 7 99021454 99021454 C T ATP5J2-PTCD1 Missense_Mutation p.E671K 0.25 deleterious(0.02) possibly_damaging(0.837) TCGA-VS-A953-01 7 99698956 99698956 G C MCM7 5'UTR 0.64 TCGA-VS-A953-01 8 101936440 101936440 C A YWHAZ Missense_Mutation p.G169C 0.68 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-VS-A953-01 8 10388961 10388961 C G PRSS55 Silent p.L168L 0.47 TCGA-VS-A953-01 8 110542328 110542328 T A PKHD1L1 3'UTR 0.07 TCGA-VS-A953-01 8 110542329 110542329 C A PKHD1L1 3'UTR 0.07 TCGA-VS-A953-01 8 116599714 116599714 G A TRPS1 Silent p.N738N 0.07 TCGA-VS-A953-01 8 121383074 121383074 G T COL14A1 Intron 0.21 TCGA-VS-A953-01 8 124195481 124195481 C T FAM83A Silent p.L129L 0.77 TCGA-VS-A953-01 8 13424978 13424978 G C C8orf48 Missense_Mutation p.E160Q 0.27 tolerated(0.08) probably_damaging(0.923) TCGA-VS-A953-01 8 145740597 145740597 C G RECQL4 Missense_Mutation p.E474Q 0.11 tolerated(0.19) benign(0.016) TCGA-VS-A953-01 8 21925058 21925058 G C DMTN Silent p.V38V 0.10 TCGA-VS-A953-01 8 23225769 23225769 A T LOXL2 Missense_Mutation p.H32Q 0.45 tolerated_low_confidence(0.12) benign(0.002) TCGA-VS-A953-01 8 38270936 38270936 C G FGFR1 3'UTR 0.55 TCGA-VS-A953-01 8 43025823 43025823 G T HGSNAT Silent p.V243V 0.29 TCGA-VS-A953-01 8 48830933 48830933 C G PRKDC Missense_Mutation p.K810N 0.69 benign(0.013) TCGA-VS-A953-01 8 55543025 55543025 G A RP1 3'UTR 0.35 TCGA-VS-A953-01 8 60031656 60031656 G C TOX 5'UTR 0.33 TCGA-VS-A953-01 8 68255489 68255489 G A ARFGEF1 Silent p.L12L 0.20 TCGA-VS-A953-01 8 70571225 70571225 G A SULF1 3'UTR 0.13 TCGA-VS-A953-01 8 70964388 70964388 G A PRDM14 Missense_Mutation p.S547L 0.24 tolerated(0.69) benign(0.005) TCGA-VS-A953-01 8 80948586 80948586 G C TPD52 3'Flank 0.24 TCGA-VS-A953-01 8 87563275 87563275 G A CPNE3 Missense_Mutation p.D339N 0.06 deleterious(0.01) benign(0.327) TCGA-VS-A953-01 8 95531463 95531463 C G KIAA1429 Missense_Mutation p.D755H 0.25 tolerated(0.13) probably_damaging(0.94) TCGA-VS-A953-01 8 95543311 95543311 C A KIAA1429 Missense_Mutation p.D163Y 0.19 tolerated(0.06) possibly_damaging(0.8) TCGA-VS-A953-01 8 95906460 95906460 C G CCNE2 5'UTR 0.18 TCGA-VS-A953-01 8 96053849 96053849 G A NDUFAF6 Missense_Mutation p.E158K 0.27 tolerated(0.15) benign(0.285) TCGA-VS-A953-01 9 104433310 104433310 T G GRIN3A Missense_Mutation p.N462H 0.16 tolerated(1) benign(0.004) TCGA-VS-A953-01 9 116346342 116346342 G C RGS3 Missense_Mutation p.E884Q 0.22 deleterious(0.02) benign(0.439) TCGA-VS-A953-01 9 119488213 119488213 G C ASTN2 Silent p.L830L 0.22 TCGA-VS-A953-01 9 125282315 125282315 G A OR1J4 Missense_Mutation p.G299E 0.43 tolerated_low_confidence(0.19) benign(0.033) TCGA-VS-A953-01 9 126176860 126176860 C T DENND1A Intron 0.18 TCGA-VS-A953-01 9 127119168 127119168 G A PSMB7 Silent p.S199S 0.48 TCGA-VS-A953-01 9 131105492 131105492 C T SLC27A4 Silent p.F27F 0.37 TCGA-VS-A953-01 9 131679029 131679029 C T LRRC8A 3'UTR 0.49 TCGA-VS-A953-01 9 136260872 136260872 C T C9orf96 Missense_Mutation p.S283L 0.44 tolerated(0.13) benign(0.052) TCGA-VS-A953-01 9 138678110 138678110 G T KCNT1 Missense_Mutation p.R1082L 0.40 tolerated_low_confidence(0.12) benign(0.01) TCGA-VS-A953-01 9 139290133 139290133 C T SNAPC4 Silent p.L89L 0.32 TCGA-VS-A953-01 9 139334877 139334877 G T SEC16A 3'UTR 0.38 TCGA-VS-A953-01 9 139378885 139378885 G C C9orf163 5'UTR 0.36 TCGA-VS-A953-01 9 140069800 140069800 G C ANAPC2 Silent p.V715V 0.55 TCGA-VS-A953-01 9 140119594 140119594 G A C9orf169 5'Flank 0.20 TCGA-VS-A953-01 9 140136952 140136952 G C TUBB4B Missense_Mutation p.Q94H 0.40 deleterious_low_confidence(0.03) benign(0.017) TCGA-VS-A953-01 9 140510072 140510072 C T C9orf37 3'UTR 0.45 TCGA-VS-A953-01 9 140777352 140777352 C T CACNA1B Intron 0.09 TCGA-VS-A953-01 9 25678348 25678348 G A TUSC1 5'UTR 0.22 TCGA-VS-A953-01 9 34257690 34257690 G C KIF24 Missense_Mutation p.Q639E 0.19 tolerated(0.54) benign(0.003) TCGA-VS-A953-01 9 34657577 34657577 G A IL11RA Silent p.Q213Q 0.51 TCGA-VS-A953-01 9 35740903 35740903 G A GBA2 Silent p.S315S 0.23 TCGA-VS-A953-01 9 37777779 37777779 G C TRMT10B 3'UTR 0.64 TCGA-VS-A953-01 9 4793082 4793082 G A RCL1 5'UTR 0.38 TCGA-VS-A953-01 9 6486823 6486823 G A UHRF2 Silent p.V465V 0.46 TCGA-VS-A953-01 9 69200488 69200488 C T FOXD4L6 Silent p.P375P 0.29 TCGA-VS-A953-01 9 74587690 74587690 G A C9orf85 Missense_Mutation p.E136K 0.43 tolerated(0.3) benign(0.005) TCGA-VS-A953-01 X 102631508 102631508 G A NGFRAP1 5'UTR 0.29 TCGA-VS-A953-01 X 114426119 114426119 C A RBMXL3 Silent p.G705G 0.25 TCGA-VS-A953-01 X 128599557 128599558 CT - SMARCA1 Frame_Shift_Del p.Q990Lfs*9 0.26 TCGA-VS-A953-01 X 129148372 129148372 G C BCORL1 Missense_Mutation p.D542H 0.48 possibly_damaging(0.906) TCGA-VS-A953-01 X 131520705 131520705 C T MBNL3 Silent p.P302P 0.50 TCGA-VS-A953-01 X 135053237 135053237 C G MMGT1 Missense_Mutation p.D38H 0.19 tolerated(0.56) benign(0.025) TCGA-VS-A953-01 X 135288627 135288627 T A FHL1 Missense_Mutation p.D12E 0.14 tolerated(1) benign(0.003) TCGA-VS-A953-01 X 150832723 150832723 C A PASD1 Missense_Mutation p.P325Q 0.22 tolerated(0.79) benign(0.099) TCGA-VS-A953-01 X 152158325 152158325 C T PNMA5 3'UTR 0.36 TCGA-VS-A953-01 X 152686697 152686697 G A ZFP92 Missense_Mutation p.G288S 0.14 tolerated(0.07) possibly_damaging(0.633) TCGA-VS-A953-01 X 153178933 153178933 G C ARHGAP4 Nonsense_Mutation p.S459* 0.52 TCGA-VS-A953-01 X 153218326 153218326 C T HCFC1 Silent p.L1527L 0.32 TCGA-VS-A953-01 X 153296295 153296295 G A MECP2 Silent p.L340L 0.20 TCGA-VS-A953-01 X 153416342 153416342 C G OPN1LW Missense_Mutation p.I109M 0.58 tolerated(0.06) probably_damaging(0.983) TCGA-VS-A953-01 X 32361337 32361337 G A DMD Nonsense_Mutation p.Q1885* 0.23 TCGA-VS-A953-01 X 35821656 35821656 G A MAGEB16 3'UTR 0.35 TCGA-VS-A953-01 X 48325470 48325470 C T SLC38A5 Intron 0.40 TCGA-VS-A953-01 X 53455428 53455428 T G RIBC1 Missense_Mutation p.Y133D 0.46 tolerated(0.2) benign(0.288) TCGA-VS-A953-01 X 57458390 57458390 C G FAAH2 Missense_Mutation p.Q346E 0.37 tolerated(0.2) benign(0.028) TCGA-VS-A953-01 X 6975709 6975709 G A HDHD1 Intron 0.25 TCGA-VS-A953-01 X 70520916 70520916 A G NONO 3'UTR 0.61 TCGA-VS-A953-01 X 76938197 76938197 C T ATRX Missense_Mutation p.E851K 0.39 benign(0.092) TCGA-VS-A954-01 10 115423593 115423593 C T NRAP Missense_Mutation p.E17K 0.59 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VS-A954-01 10 127753558 127753558 C A ADAM12 Nonsense_Mutation p.G479* 0.44 TCGA-VS-A954-01 10 129216739 129216739 G A DOCK1 Silent p.P1521P 0.12 TCGA-VS-A954-01 10 134884467 134884467 C A GPR123 Missense_Mutation p.S12Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-VS-A954-01 10 95719647 95719647 T G PIPSL RNA 0.38 TCGA-VS-A954-01 11 113238946 113238946 G C TTC12 3'Flank 0.73 TCGA-VS-A954-01 11 554256 554256 C T LRRC56 Missense_Mutation p.P537S 0.60 deleterious_low_confidence(0.04) benign(0.067) TCGA-VS-A954-01 11 56756787 56756787 T C OR5AK2 Silent p.T133T 0.22 TCGA-VS-A954-01 11 58190224 58190224 G A OR5B2 Silent p.L171L 0.27 TCGA-VS-A954-01 11 62519955 62519955 G A ZBTB3 Silent p.P444P 0.30 TCGA-VS-A954-01 11 65063497 65063497 G A POLA2 Intron 0.28 TCGA-VS-A954-01 11 67763288 67763288 G A UNC93B1 Missense_Mutation p.A385V 0.12 tolerated(0.17) possibly_damaging(0.763) TCGA-VS-A954-01 11 68748063 68748063 G C MRGPRD Missense_Mutation p.I131M 0.41 tolerated(0.07) possibly_damaging(0.742) TCGA-VS-A954-01 11 8714986 8714986 G T ST5 3'UTR 0.42 TCGA-VS-A954-01 13 23905167 23905167 C G SACS Missense_Mutation p.R4283T 0.15 benign(0.01) TCGA-VS-A954-01 13 72440446 72440446 G A DACH1 Silent p.S154S 0.11 TCGA-VS-A954-01 14 73425548 73425548 G C DCAF4 3'UTR 0.26 TCGA-VS-A954-01 14 90736626 90736626 C T PSMC1 Missense_Mutation p.T373M 0.42 tolerated(0.14) benign(0.042) TCGA-VS-A954-01 15 23006617 23006617 C T NIPA2 Silent p.V229V 0.35 TCGA-VS-A954-01 15 26026366 26026366 C G ATP10A Missense_Mutation p.E152Q 0.47 tolerated(0.14) benign(0.12) TCGA-VS-A954-01 15 51768876 51768876 G A DMXL2 Nonsense_Mutation p.Q2292* 0.20 TCGA-VS-A954-01 16 11578783 11578783 G A CTD-3088G3.8 Silent p.P685P 0.31 TCGA-VS-A954-01 16 14306227 14306227 G A MKL2 Silent p.A79A 0.33 TCGA-VS-A954-01 16 1723984 1723984 C T CRAMP1L Missense_Mutation p.R1250C 0.40 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VS-A954-01 16 4307818 4307818 G A TFAP4 3'UTR 0.26 TCGA-VS-A954-01 16 88909187 88909187 C T GALNS Silent p.P57P 0.41 TCGA-VS-A954-01 17 16004815 16004815 G A NCOR1 Silent p.P813P 0.41 TCGA-VS-A954-01 17 2604676 2604676 C T CLUH Missense_Mutation p.G257S 0.27 deleterious(0) probably_damaging(1) TCGA-VS-A954-01 17 38569736 38569736 C T TOP2A Silent p.V158V 0.39 TCGA-VS-A954-01 17 40689539 40689539 C T NAGLU Silent p.S169S 0.42 TCGA-VS-A954-01 17 80207970 80207970 G A CSNK1D Intron 0.19 TCGA-VS-A954-01 19 11616985 11616985 C G ECSIT 3'UTR 0.29 TCGA-VS-A954-01 19 11944081 11944081 C T ZNF440 3'UTR 0.23 TCGA-VS-A954-01 19 15302644 15302644 G A NOTCH3 Silent p.D238D 0.24 TCGA-VS-A954-01 19 34991925 34991925 G A WTIP 3'UTR 0.29 TCGA-VS-A954-01 19 40398470 40398470 G A FCGBP Missense_Mutation p.S2166L 0.21 possibly_damaging(0.651) TCGA-VS-A954-01 19 41798334 41798334 C T HNRNPUL1 Missense_Mutation p.P395L 0.27 deleterious(0.02) unknown(0) TCGA-VS-A954-01 19 54947009 54947009 G A TTYH1 Intron 0.29 TCGA-VS-A954-01 19 55451215 55451215 G A NLRP7 Silent p.F324F 0.27 TCGA-VS-A954-01 19 9068151 9068151 G A MUC16 Missense_Mutation p.S6432F 0.19 unknown(0) TCGA-VS-A954-01 19 9453616 9453616 G C ZNF559 Missense_Mutation p.E497Q 0.22 tolerated(0.31) possibly_damaging(0.859) TCGA-VS-A954-01 1 113615928 113615928 G A LRIG2 5'UTR 0.27 TCGA-VS-A954-01 1 152280805 152280805 G A FLG Missense_Mutation p.S2186F 0.18 possibly_damaging(0.485) TCGA-VS-A954-01 1 19415316 19415316 C T UBR4 Silent p.R4789R 0.20 TCGA-VS-A954-01 1 200877871 200877871 G A C1orf106 Silent p.V196V 0.10 TCGA-VS-A954-01 1 208198622 208198622 C T PLXNA2 3'UTR 0.20 TCGA-VS-A954-01 1 224482060 224482060 G A NVL Nonsense_Mutation p.R412* 0.11 TCGA-VS-A954-01 1 237936868 237936868 G C RYR2 Missense_Mutation p.D3899H 0.35 probably_damaging(0.997) TCGA-VS-A954-01 1 248685147 248685147 C T OR2G6 Missense_Mutation p.S67L 0.20 deleterious(0) probably_damaging(0.973) TCGA-VS-A954-01 1 248737342 248737342 G A OR2T34 Silent p.R239R 0.32 TCGA-VS-A954-01 1 26110340 26110340 G A MAN1C1 3'UTR 0.31 TCGA-VS-A954-01 1 32673613 32673613 C T IQCC Missense_Mutation p.S524F 0.20 tolerated_low_confidence(0.07) probably_damaging(0.991) TCGA-VS-A954-01 1 35656939 35656939 C T SFPQ Intron 0.26 TCGA-VS-A954-01 1 39879808 39879808 G C KIAA0754 Missense_Mutation p.E1155Q 0.14 possibly_damaging(0.607) TCGA-VS-A954-01 1 66838888 66838888 G T PDE4B 3'UTR 0.38 TCGA-VS-A954-01 1 985635 985635 G A AGRN Silent p.G1634G 0.32 TCGA-VS-A954-01 1 985876 985876 G A AGRN Silent p.Q1682Q 0.36 TCGA-VS-A954-01 20 11900423 11900423 G A BTBD3 Missense_Mutation p.E159K 0.21 tolerated(0.13) benign(0.166) TCGA-VS-A954-01 20 37353501 37353501 C T SLC32A1 Missense_Mutation p.A45V 0.28 tolerated(0.13) benign(0.007) TCGA-VS-A954-01 20 39795433 39795433 G A PLCG1 Silent p.P745P 0.34 TCGA-VS-A954-01 20 43379293 43379293 C T KCNK15 Silent p.P269P 0.33 TCGA-VS-A954-01 20 44513750 44513750 G A ZSWIM1 3'UTR 0.12 TCGA-VS-A954-01 20 46319022 46319022 G A SULF2 Silent p.L195L 0.20 TCGA-VS-A954-01 20 57415543 57415566 GAGCCTGAGACCGCCCCCACCACT - RP4-806M20.3 5'Flank 0.24 TCGA-VS-A954-01 20 62172858 62172858 C G SRMS Silent p.R354R 0.25 TCGA-VS-A954-01 20 62522643 62522643 C G TPD52L2 3'UTR 0.64 TCGA-VS-A954-01 21 15592016 15592016 G - RBM11 Frame_Shift_Del p.G77Efs*29 0.25 TCGA-VS-A954-01 21 22906966 22906966 G A NCAM2 Silent p.L797L 0.37 TCGA-VS-A954-01 22 30867889 30867889 C T SEC14L3 Intron 0.36 TCGA-VS-A954-01 22 37272080 37272080 G A NCF4 Missense_Mutation p.R338Q 0.36 deleterious_low_confidence(0) benign(0.238) TCGA-VS-A954-01 22 38823086 38823086 C T KCNJ4 Missense_Mutation p.R351Q 0.48 deleterious(0.01) possibly_damaging(0.672) TCGA-VS-A954-01 22 41551003 41551003 C T EP300 Silent p.F1049F 0.23 TCGA-VS-A954-01 2 16086322 16086322 G A MYCN 3'UTR 0.38 TCGA-VS-A954-01 2 187713875 187713875 G A ZSWIM2 5'UTR 0.61 TCGA-VS-A954-01 2 208446805 208446805 C G CREB1 Intron 0.32 TCGA-VS-A954-01 2 24426495 24426495 C T ITSN2 Silent p.%3D 0.31 TCGA-VS-A954-01 2 46770209 46770209 G A RHOQ Silent p.L8L 0.31 TCGA-VS-A954-01 2 8108312 8108312 G A LINC00298 RNA 0.26 TCGA-VS-A954-01 2 85852812 85852812 C T USP39 Nonsense_Mutation p.Q241* 0.30 TCGA-VS-A954-01 3 101395962 101395962 G A ZBTB11 5'UTR 0.19 TCGA-VS-A954-01 3 101395973 101395973 G A ZBTB11 5'UTR 0.20 TCGA-VS-A954-01 3 107932777 107932777 C G IFT57 Splice_Site p.X195_splice 0.14 TCGA-VS-A954-01 3 113528269 113528269 G A ATP6V1A Missense_Mutation p.D617N 0.17 deleterious(0.03) benign(0.047) TCGA-VS-A954-01 3 127779431 127779431 C T SEC61A1 Silent p.L181L 0.18 TCGA-VS-A954-01 3 128532331 128532331 A G RAB7A 3'UTR 0.51 TCGA-VS-A954-01 3 136082241 136082241 C G STAG1 Missense_Mutation p.Q918H 0.21 tolerated(0.29) possibly_damaging(0.594) TCGA-VS-A954-01 3 137483747 137483747 C T SOX14 Missense_Mutation p.R41C 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A954-01 3 139069078 139069078 G A MRPS22 Missense_Mutation p.E188K 0.16 deleterious(0) probably_damaging(1) TCGA-VS-A954-01 3 160167575 160167575 G A TRIM59 5'UTR 0.14 TCGA-VS-A954-01 3 182661983 182661983 G A DCUN1D1 3'UTR 0.19 TCGA-VS-A954-01 3 189706791 189706791 C T LEPREL1 Missense_Mutation p.C287Y 0.40 deleterious(0) probably_damaging(0.986) TCGA-VS-A954-01 3 192993053 192993053 G A ATP13A5 Silent p.I1145I 0.18 TCGA-VS-A954-01 3 21606119 21606119 G A ZNF385D Nonsense_Mutation p.R75* 0.43 TCGA-VS-A954-01 3 32995589 32995589 C T CCR4 Silent p.I225I 0.60 TCGA-VS-A954-01 3 43122165 43122165 C T POMGNT2 Silent p.P253P 0.42 TCGA-VS-A954-01 3 78649319 78649319 C T ROBO1 Missense_Mutation p.E1629K 0.09 deleterious_low_confidence(0.02) probably_damaging(0.952) TCGA-VS-A954-01 3 9695376 9695376 G A MTMR14 Silent p.T77T 0.12 TCGA-VS-A954-01 4 158091598 158091598 A G GLRB Silent p.R404R 0.29 TCGA-VS-A954-01 4 2941026 2941026 T C NOP14 Missense_Mutation p.E788G 0.28 deleterious(0) probably_damaging(0.998) TCGA-VS-A954-01 4 37447573 37447573 T C KIAA1239 Silent p.S1321S 0.33 TCGA-VS-A954-01 4 66233112 66233112 A G EPHA5 Silent p.D629D 0.40 TCGA-VS-A954-01 4 66356239 66356239 C T EPHA5 Missense_Mutation p.G420S 0.37 tolerated(0.15) possibly_damaging(0.812) TCGA-VS-A954-01 5 140739893 140739893 G A PCDHGB2 Missense_Mutation p.R64Q 0.41 deleterious(0.02) possibly_damaging(0.595) TCGA-VS-A954-01 5 140774388 140774388 G A PCDHGA8 Missense_Mutation p.E670K 0.35 deleterious_low_confidence(0) benign(0.091) TCGA-VS-A954-01 5 142780226 142780226 C G NR3C1 Missense_Mutation p.R60T 0.33 tolerated_low_confidence(0.22) benign(0.023) TCGA-VS-A954-01 5 149932995 149932995 C T NDST1 3'UTR 0.37 TCGA-VS-A954-01 5 150887109 150887109 C T FAT2 Silent p.R4041R 0.32 TCGA-VS-A954-01 5 157078464 157078464 C A SOX30 Missense_Mutation p.R208L 0.46 tolerated_low_confidence(0.06) benign(0.007) TCGA-VS-A954-01 5 37020575 37020575 C A NIPBL Missense_Mutation p.F1675L 0.43 deleterious(0) probably_damaging(0.993) TCGA-VS-A954-01 5 37371042 37371042 G C NUP155 Missense_Mutation p.S13C 0.28 deleterious_low_confidence(0.03) benign(0.159) TCGA-VS-A954-01 5 65004313 65004313 C T SGTB Intron 0.32 TCGA-VS-A954-01 6 150269909 150269909 G A ULBP2 3'UTR 0.56 TCGA-VS-A954-01 6 159653637 159653637 G A FNDC1 Missense_Mutation p.R698Q 0.55 tolerated_low_confidence(0.06) unknown(0) TCGA-VS-A954-01 6 1960114 1960114 C T GMDS Silent p.E210E 0.40 TCGA-VS-A954-01 6 27783106 27783106 C T HIST1H2BM Silent p.I95I 0.31 TCGA-VS-A954-01 6 43126676 43126676 C T PTK7 Missense_Mutation p.A956V 0.38 tolerated(0.21) possibly_damaging(0.785) TCGA-VS-A954-01 6 49928044 49928044 G A DEFB114 Silent p.C57C 0.19 TCGA-VS-A954-01 6 70897923 70897923 G - COL19A1 Frame_Shift_Del p.G1001Afs*18 0.30 TCGA-VS-A954-01 6 72957763 72957763 C T RIMS1 Missense_Mutation p.S725F 0.28 deleterious(0) possibly_damaging(0.629) TCGA-VS-A954-01 6 93952194 93952194 G A EPHA7 3'UTR 0.64 TCGA-VS-A954-01 6 99849011 99849011 C T PNISR Missense_Mutation p.R608Q 0.52 deleterious_low_confidence(0.01) benign(0.417) TCGA-VS-A954-01 7 100277601 100277601 G C GIGYF1 3'UTR 0.27 TCGA-VS-A954-01 7 100424682 100424682 C A EPHB4 5'UTR 0.30 TCGA-VS-A954-01 7 150033895 150033895 T A LRRC61 5'UTR 0.60 TCGA-VS-A954-01 7 154760463 154760463 C T PAXIP1 Missense_Mutation p.R483H 0.34 deleterious(0.03) unknown(0) TCGA-VS-A954-01 7 23313149 23313149 C G GPNMB Missense_Mutation p.S492W 0.38 deleterious(0.02) benign(0.082) TCGA-VS-A954-01 7 44294154 44294154 C T CAMK2B Missense_Mutation p.E110K 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VS-A954-01 7 55249278 55249278 C T EGFR Intron 0.29 TCGA-VS-A954-01 7 76903047 76903047 G T CCDC146 Nonsense_Mutation p.E404* 0.39 TCGA-VS-A954-01 7 966266 966266 G A ADAP1 Silent p.H76H 0.38 TCGA-VS-A954-01 8 143623840 143623840 G A BAI1 Silent p.P1415P 0.35 TCGA-VS-A954-01 8 15480708 15480708 G A TUSC3 Missense_Mutation p.M86I 0.22 tolerated(0.16) benign(0.007) TCGA-VS-A954-01 8 17206503 17206503 G A MTMR7 Missense_Mutation p.R186W 0.21 deleterious(0) possibly_damaging(0.828) TCGA-VS-A954-01 8 17824665 17824665 C T PCM1 Missense_Mutation p.S1133L 0.09 deleterious(0) benign(0.1) TCGA-VS-A954-01 8 1876771 1876771 G C ARHGEF10 Missense_Mutation p.R959T 0.20 tolerated(0.22) benign(0.013) TCGA-VS-A954-01 8 25718851 25718851 G C EBF2 Missense_Mutation p.L380V 0.32 tolerated(0.06) benign(0.412) TCGA-VS-A954-01 8 37700321 37700321 C T GPR124 3'UTR 0.36 TCGA-VS-A954-01 8 77616777 77616777 G T ZFHX4 Missense_Mutation p.A152S 0.33 possibly_damaging(0.567) TCGA-VS-A954-01 8 77620257 77620257 C T ZFHX4 Missense_Mutation p.H1023Y 0.58 benign(0.291) TCGA-VS-A954-01 9 118949864 118949864 C G PAPPA Missense_Mutation p.Q283E 0.27 tolerated(1) benign(0.38) TCGA-VS-A954-01 9 133954574 133954574 G A LAMC3 Silent p.A1272A 0.57 TCGA-VS-A954-01 9 134183554 134183554 C T PPAPDC3 Silent p.I232I 0.78 TCGA-VS-A954-01 9 38586257 38586257 C T ANKRD18A Missense_Mutation p.E724K 0.17 tolerated(0.69) possibly_damaging(0.636) TCGA-VS-A954-01 9 6329696 6329696 G A TPD52L3 3'UTR 0.14 TCGA-VS-A954-01 9 742406 742406 G A KANK1 Splice_Site p.X1299_splice 0.28 TCGA-VS-A957-01 10 106037839 106037839 G A GSTO2 Missense_Mutation p.A111T 0.49 deleterious(0) probably_damaging(1) TCGA-VS-A957-01 10 122664835 122664835 C T WDR11 Silent p.G1066G 0.14 TCGA-VS-A957-01 10 22620153 22620154 - A BMI1 3'UTR 0.18 TCGA-VS-A957-01 10 95719577 95719577 G C PIPSL RNA 0.12 TCGA-VS-A957-01 11 108381423 108381423 T C EXPH5 Missense_Mutation p.K1604R 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-VS-A957-01 12 108643645 108643645 C T WSCD2 3'UTR 0.37 TCGA-VS-A957-01 12 112081947 112081947 G T BRAP 3'UTR 0.24 TCGA-VS-A957-01 12 117662862 117662862 C T NOS1 Missense_Mutation p.R1296Q 0.31 deleterious(0) probably_damaging(1) TCGA-VS-A957-01 12 132522312 132522312 G A EP400 Missense_Mutation p.D2013N 0.29 unknown(0) TCGA-VS-A957-01 12 21205197 21205197 T A SLCO1B7 Splice_Site p.X452_splice 0.09 TCGA-VS-A957-01 12 26551893 26551893 C T ITPR2 Missense_Mutation p.G2538S 0.08 deleterious(0) probably_damaging(1) TCGA-VS-A957-01 12 51019762 51019762 A G DIP2B Missense_Mutation p.D35G 0.11 deleterious(0) probably_damaging(1) TCGA-VS-A957-01 12 51634821 51634821 C T DAZAP2 Missense_Mutation p.P100L 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VS-A957-01 12 53202600 53202600 G A KRT4 Missense_Mutation p.T290M 0.18 tolerated(0.07) benign(0.33) TCGA-VS-A957-01 12 58160655 58160655 C T CYP27B1 Missense_Mutation p.G57E 0.29 deleterious(0.02) probably_damaging(1) TCGA-VS-A957-01 12 74932540 74932540 C T ATXN7L3B 3'UTR 0.10 TCGA-VS-A957-01 12 78400562 78400562 A T NAV3 Missense_Mutation p.D415V 0.37 deleterious(0.01) probably_damaging(0.929) TCGA-VS-A957-01 12 85255615 85255615 C T SLC6A15 Silent p.L663L 0.35 TCGA-VS-A957-01 13 103383432 103383432 G T CCDC168 Missense_Mutation p.Q1910K 0.24 deleterious(0.02) unknown(0) TCGA-VS-A957-01 13 36686036 36686036 C T DCLK1 Silent p.V231V 0.22 TCGA-VS-A957-01 13 37619419 37619419 C - SUPT20H Frame_Shift_Del p.G86Dfs*4 0.15 TCGA-VS-A957-01 15 25332698 25332698 G A SNORD116-23 5'Flank 0.25 TCGA-VS-A957-01 15 33447220 33447220 G T FMN1 5'UTR 0.33 TCGA-VS-A957-01 15 66273186 66273186 C T MEGF11 Missense_Mutation p.R231H 0.62 deleterious(0.03) benign(0.052) TCGA-VS-A957-01 15 81188288 81188288 G A KIAA1199 Nonsense_Mutation p.W433* 0.53 TCGA-VS-A957-01 16 1395076 1395076 G A BAIAP3 Missense_Mutation p.R674H 0.29 tolerated(0.16) benign(0.004) TCGA-VS-A957-01 16 1712761 1712761 G A CRAMP1L Splice_Site p.X866_splice 0.11 TCGA-VS-A957-01 16 29821824 29821824 C T MAZ 3'UTR 0.31 TCGA-VS-A957-01 16 30007683 30007683 C T INO80E Silent p.L18L 0.15 TCGA-VS-A957-01 16 67270902 67270902 C T FHOD1 Missense_Mutation p.G370D 0.15 tolerated(0.16) benign(0.43) TCGA-VS-A957-01 16 75565447 75565447 C A CHST5 5'UTR 0.53 TCGA-VS-A957-01 16 87921629 87921629 C A CA5A 3'UTR 0.32 TCGA-VS-A957-01 17 4462350 4462350 C T GGT6 Missense_Mutation p.A148T 0.26 deleterious(0.04) probably_damaging(0.986) TCGA-VS-A957-01 17 62968777 62968777 T C AMZ2P1 RNA 0.11 TCGA-VS-A957-01 17 6526406 6526406 C A KIAA0753 Missense_Mutation p.M300I 0.29 tolerated(0.08) benign(0.01) TCGA-VS-A957-01 17 76437217 76437217 A G DNAH17 Missense_Mutation p.S3851P 0.12 benign(0.26) TCGA-VS-A957-01 17 80352404 80352404 C T OGFOD3 Missense_Mutation p.R280Q 0.20 tolerated_low_confidence(0.4) benign(0) TCGA-VS-A957-01 18 20768801 20768803 GAC - CABLES1 Splice_Site p.X282_splice 0.23 TCGA-VS-A957-01 18 3879883 3879883 G A DLGAP1 Silent p.S62S 0.37 TCGA-VS-A957-01 18 72113999 72113999 G A FAM69C Missense_Mutation p.R240W 0.40 deleterious(0.01) benign(0.354) TCGA-VS-A957-01 19 10625461 10625461 C G S1PR5 Missense_Mutation p.G76A 0.48 deleterious(0.04) probably_damaging(0.999) TCGA-VS-A957-01 19 19465163 19465163 G T MAU2 Splice_Site p.X517_splice 0.21 TCGA-VS-A957-01 19 21476162 21476162 C T ZNF708 Missense_Mutation p.E536K 0.14 tolerated(0.08) benign(0.074) TCGA-VS-A957-01 19 33617616 33617616 G C GPATCH1 Silent p.V914V 0.48 TCGA-VS-A957-01 19 47259967 47259967 C T FKRP Silent p.F420F 0.33 TCGA-VS-A957-01 19 52497411 52497411 A G ZNF615 Silent p.H317H 0.11 TCGA-VS-A957-01 19 54216629 54216629 C T MIR519D RNA 0.06 TCGA-VS-A957-01 19 57335691 57335691 C T PEG3 Silent p.P111P 0.44 TCGA-VS-A957-01 1 113246340 113246340 C A RHOC Missense_Mutation p.D28Y 0.10 deleterious(0.01) probably_damaging(0.93) TCGA-VS-A957-01 1 154680213 154680213 G A KCNN3 3'UTR 0.37 TCGA-VS-A957-01 1 206594609 206594609 C G SRGAP2 Nonsense_Mutation p.S407* 0.14 TCGA-VS-A957-01 1 21415688 21415688 C A EIF4G3 5'UTR 0.52 TCGA-VS-A957-01 1 232600841 232600841 G A SIPA1L2 Silent p.I855I 0.31 TCGA-VS-A957-01 1 248084537 248084537 C T OR2T8 Missense_Mutation p.S73F 0.33 tolerated(0.77) benign(0.012) TCGA-VS-A957-01 1 40149794 40149794 C T HPCAL4 Missense_Mutation p.A65T 0.62 deleterious(0.01) possibly_damaging(0.89) TCGA-VS-A957-01 1 52552962 52552962 C T BTF3L4 3'UTR 0.82 TCGA-VS-A957-01 1 71536628 71536628 C A ZRANB2 Nonsense_Mutation p.E189* 0.28 TCGA-VS-A957-01 1 8418898 8418898 C T RERE Missense_Mutation p.E1233K 0.53 unknown(0) TCGA-VS-A957-01 1 85733330 85733330 G A BCL10 Missense_Mutation p.R228C 0.10 deleterious(0) possibly_damaging(0.513) TCGA-VS-A957-01 20 35155312 35155312 C T DLGAP4 Missense_Mutation p.R950C 0.19 deleterious(0) probably_damaging(0.969) TCGA-VS-A957-01 20 61510856 61510856 C T DIDO1 Missense_Mutation p.R2151Q 0.14 benign(0.084) TCGA-VS-A957-01 22 26348261 26348261 G T MYO18B Missense_Mutation p.A1948S 0.73 tolerated(0.1) possibly_damaging(0.575) TCGA-VS-A957-01 22 43089046 43089046 C T A4GALT Silent p.L304L 0.10 TCGA-VS-A957-01 22 46505807 46505807 G C FLJ27365 Missense_Mutation p.E134Q 0.45 tolerated_low_confidence(0.07) unknown(0) TCGA-VS-A957-01 2 179435572 179435572 C G TTN Missense_Mutation p.S25096T 0.26 TCGA-VS-A957-01 3 100042712 100042712 T G TBC1D23 3'UTR 0.28 TCGA-VS-A957-01 3 124053174 124053174 C T KALRN Silent p.S491S 0.16 TCGA-VS-A957-01 3 129292539 129292539 C T PLXND1 Missense_Mutation p.R912Q 0.16 tolerated(0.34) benign(0.041) TCGA-VS-A957-01 3 148459664 148459664 A G AGTR1 Missense_Mutation p.D281G 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-VS-A957-01 3 178560883 178560883 A G KCNMB2 3'UTR 0.06 TCGA-VS-A957-01 3 52541657 52541658 - CAC STAB1 In_Frame_Ins p.T674dup 0.74 TCGA-VS-A957-01 4 144481050 144481050 C T SMARCA5 3'Flank 0.09 TCGA-VS-A957-01 4 153244156 153244156 C - FBXW7 Frame_Shift_Del p.S668Vfs*39 0.35 TCGA-VS-A957-01 4 183064228 183064228 G C AC108142.1 RNA 0.25 TCGA-VS-A957-01 4 520998 520998 C T PIGG Missense_Mutation p.P747L 0.11 tolerated(0.64) benign(0.001) TCGA-VS-A957-01 4 57307875 57307875 C T PAICS Silent p.V21V 0.37 TCGA-VS-A957-01 5 126253851 126253851 G C MARCH3 Missense_Mutation p.R5G 0.09 tolerated_low_confidence(0.51) benign(0.002) TCGA-VS-A957-01 5 140263878 140263878 G A PCDHA13 Silent p.A675A 0.19 TCGA-VS-A957-01 5 140741255 140741255 G A PCDHGB2 Missense_Mutation p.R518H 0.42 deleterious(0.04) probably_damaging(0.958) TCGA-VS-A957-01 5 45261001 45261001 T C HCN1 3'UTR 0.05 TCGA-VS-A957-01 5 72204772 72204772 G C TNPO1 3'UTR 0.10 TCGA-VS-A957-01 5 94772588 94772588 G A FAM81B Missense_Mutation p.E291K 0.32 tolerated(0.08) benign(0.053) TCGA-VS-A957-01 6 132031782 132031782 G A CTAGE9 Nonsense_Mutation p.R126* 0.26 TCGA-VS-A957-01 6 136901478 136901478 G A MAP3K5 Missense_Mutation p.R1160W 0.41 deleterious(0) probably_damaging(0.999) TCGA-VS-A957-01 6 39285593 39285593 T C KCNK16 Missense_Mutation p.E155G 0.13 tolerated(0.15) benign(0.03) TCGA-VS-A957-01 7 107432329 107432329 A G SLC26A3 Missense_Mutation p.F110L 0.07 deleterious(0) probably_damaging(0.999) TCGA-VS-A957-01 7 140152901 140152901 C G MKRN1 3'UTR 0.33 TCGA-VS-A957-01 8 11189433 11189433 C T SLC35G5 Missense_Mutation p.A273V 0.14 deleterious(0) benign(0.038) TCGA-VS-A957-01 8 145556306 145556306 C T SCRT1 3'UTR 0.38 TCGA-VS-A957-01 8 21560393 21560393 G A GFRA2 Missense_Mutation p.T381M 0.20 tolerated(0.11) benign(0.022) TCGA-VS-A957-01 8 2954496 2954496 G A CSMD1 Missense_Mutation p.P2338L 0.30 probably_damaging(1) TCGA-VS-A957-01 8 3205682 3205682 G A CSMD1 Silent p.A1102A 0.32 TCGA-VS-A957-01 8 42742944 42742944 C T RNF170 Missense_Mutation p.V22I 0.10 tolerated(1) benign(0.009) TCGA-VS-A957-01 8 82192845 82192845 G A FABP5 Silent p.Q5Q 0.22 TCGA-VS-A957-01 9 109690702 109690702 T C ZNF462 Silent p.F1503F 0.62 TCGA-VS-A957-01 9 124546959 124546959 G A DAB2IP 3'UTR 0.12 TCGA-VS-A957-01 9 136208258 136208258 C A MED22 3'UTR 0.60 TCGA-VS-A957-01 9 136310170 136310170 C T ADAMTS13 Silent p.G869G 0.58 TCGA-VS-A957-01 9 34514434 34514434 G A DNAI1 Missense_Mutation p.A538T 0.22 deleterious(0) probably_damaging(0.991) TCGA-VS-A957-01 9 77698042 77698042 G C NMRK1 5'UTR 0.44 TCGA-VS-A957-01 9 84532915 84532915 G C SPATA31D5P RNA 0.11 TCGA-VS-A957-01 X 100611203 100611203 C T BTK Missense_Mutation p.R468H 0.14 tolerated(0.4) benign(0.027) TCGA-VS-A957-01 X 103434482 103434482 C - FAM199X 3'UTR 0.27 TCGA-VS-A957-01 X 110970862 110970862 G A ALG13 Missense_Mutation p.R704H 0.09 deleterious(0.02) probably_damaging(0.996) TCGA-VS-A957-01 X 154115702 154115702 G A F8A1 Silent p.E351E 0.14 TCGA-VS-A957-01 X 18606202 18606202 G A CDKL5 Missense_Mutation p.G228E 0.26 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-VS-A957-01 X 44921917 44921917 G A KDM6A Missense_Mutation p.R484K 0.30 tolerated(0.07) benign(0.027) TCGA-VS-A957-01 X 54265443 54265443 T C WNK3 Silent p.G1247G 0.45 TCGA-VS-A958-01 10 101451171 101451171 G A ENTPD7 Missense_Mutation p.A247T 0.32 tolerated(0.54) benign(0.002) TCGA-VS-A958-01 10 101978808 101978808 C T CHUK Missense_Mutation p.A216T 0.29 tolerated(1) benign(0.009) TCGA-VS-A958-01 10 101996940 101996940 G C CWF19L1 Intron 0.29 TCGA-VS-A958-01 10 102849454 102849454 G A TLX1NB Missense_Mutation p.S70F 0.38 deleterious_low_confidence(0) benign(0.003) TCGA-VS-A958-01 10 103901545 103901545 G C PPRC1 Missense_Mutation p.E1094Q 0.30 deleterious_low_confidence(0.02) benign(0.119) TCGA-VS-A958-01 10 105148296 105148296 C T TAF5 3'UTR 0.11 TCGA-VS-A958-01 10 113932046 113932046 G C GPAM Missense_Mutation p.H230D 0.17 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 10 115614614 115614614 C T NHLRC2 5'UTR 0.27 TCGA-VS-A958-01 10 115910969 115910969 C G C10orf118 Missense_Mutation p.R257T 0.22 tolerated(0.39) benign(0.038) TCGA-VS-A958-01 10 118355821 118355821 G A PNLIPRP1 Silent p.L187L 0.28 TCGA-VS-A958-01 10 120790378 120790378 G A NANOS1 3'UTR 0.29 TCGA-VS-A958-01 10 123809994 123809994 C T TACC2 Silent p.P25P 0.23 TCGA-VS-A958-01 10 124271484 124271484 A T HTRA1 Splice_Site p.X393_splice 0.18 TCGA-VS-A958-01 10 126089488 126089488 G C OAT Silent p.L360L 0.06 TCGA-VS-A958-01 10 13386973 13386973 C T SEPHS1 5'UTR 0.28 TCGA-VS-A958-01 10 134147168 134147168 C T LRRC27 Missense_Mutation p.S47L 0.31 tolerated(0.16) possibly_damaging(0.587) TCGA-VS-A958-01 10 134909235 134909235 G A GPR123 Intron 0.24 TCGA-VS-A958-01 10 18827175 18827175 C T CACNB2 Silent p.L457L 0.22 TCGA-VS-A958-01 10 25288404 25288404 C T ENKUR Missense_Mutation p.G50E 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 10 27009285 27009285 G C PDSS1 Missense_Mutation p.K202N 0.18 deleterious(0) possibly_damaging(0.673) TCGA-VS-A958-01 10 27037639 27037639 C T ABI1 Missense_Mutation p.D463N 0.19 tolerated(0.21) possibly_damaging(0.863) TCGA-VS-A958-01 10 27329063 27329063 C G ANKRD26 Missense_Mutation p.E736Q 0.27 deleterious(0.04) possibly_damaging(0.73) TCGA-VS-A958-01 10 27962858 27962858 C T MKX 3'UTR 0.28 TCGA-VS-A958-01 10 28345454 28345454 C G MPP7 Missense_Mutation p.K502N 0.25 tolerated(0.2) probably_damaging(0.965) TCGA-VS-A958-01 10 28345474 28345474 C G MPP7 Missense_Mutation p.E496Q 0.21 tolerated(0.15) probably_damaging(0.983) TCGA-VS-A958-01 10 28900821 28900821 C T WAC Silent p.I469I 0.21 TCGA-VS-A958-01 10 32310017 32310017 G C KIF5B Missense_Mutation p.Q713E 0.05 tolerated(0.11) benign(0.097) TCGA-VS-A958-01 10 38241276 38241276 C T ZNF25 Missense_Mutation p.V384I 0.21 tolerated(0.38) benign(0.186) TCGA-VS-A958-01 10 3827314 3827314 C G KLF6 5'UTR 0.25 TCGA-VS-A958-01 10 38344040 38344040 G A ZNF33A Missense_Mutation p.E330K 0.18 tolerated(0.05) benign(0.182) TCGA-VS-A958-01 10 43679105 43679105 C T CSGALNACT2 3'UTR 0.31 TCGA-VS-A958-01 10 47701176 47701176 C G ANTXRL Silent p.L584L 0.23 TCGA-VS-A958-01 10 5009205 5009205 C G AKR1C1 Silent p.L113L 0.23 TCGA-VS-A958-01 10 52066250 52066250 C G SGMS1 3'UTR 0.23 TCGA-VS-A958-01 10 55582145 55582145 G A PCDH15 Missense_Mutation p.P1783S 0.23 tolerated_low_confidence(0.53) unknown(0) TCGA-VS-A958-01 10 61718171 61718171 C G C10orf40 Missense_Mutation p.E87Q 0.22 deleterious_low_confidence(0) possibly_damaging(0.617) TCGA-VS-A958-01 10 6258109 6258109 G C PFKFB3 Missense_Mutation p.L107F 0.25 probably_damaging(1) TCGA-VS-A958-01 10 6277219 6277219 G A PFKFB3 3'UTR 0.22 TCGA-VS-A958-01 10 63809108 63809108 C G ARID5B Intron 0.32 TCGA-VS-A958-01 10 70451452 70451452 G A TET1 Missense_Mutation p.V2098I 0.21 tolerated(0.18) benign(0.001) TCGA-VS-A958-01 10 70992808 70992808 G A HKDC1 Missense_Mutation p.M138I 0.31 tolerated(0.09) benign(0.003) TCGA-VS-A958-01 10 71332658 71332658 C T NEUROG3 Missense_Mutation p.E48K 0.23 tolerated(0.07) benign(0.257) TCGA-VS-A958-01 10 73050727 73050727 C T UNC5B Silent p.F385F 0.25 TCGA-VS-A958-01 10 73921354 73921354 C T ASCC1 Missense_Mutation p.E218K 0.23 tolerated(0.08) benign(0.241) TCGA-VS-A958-01 10 74884001 74884001 G T NUDT13 Nonsense_Mutation p.E130* 0.19 TCGA-VS-A958-01 10 81274883 81274883 T A EIF5AL1 3'UTR 0.21 TCGA-VS-A958-01 10 82045299 82045299 G A MAT1A Silent p.L46L 0.26 TCGA-VS-A958-01 10 90693620 90693620 G C ACTA2 3'Flank 0.18 TCGA-VS-A958-01 10 93221868 93221868 C G HECTD2 Nonsense_Mutation p.S176* 0.23 TCGA-VS-A958-01 10 96162752 96162752 C G TBC1D12 Missense_Mutation p.P128A 0.31 tolerated_low_confidence(0.23) benign(0) TCGA-VS-A958-01 10 96361331 96361331 C T HELLS Silent p.F823F 0.26 TCGA-VS-A958-01 10 98743107 98743107 G A C10orf12 Missense_Mutation p.E654K 0.33 deleterious(0.03) possibly_damaging(0.53) TCGA-VS-A958-01 11 100095465 100095465 G A CNTN5 Silent p.L642L 0.19 TCGA-VS-A958-01 11 100962580 100962580 C G PGR Missense_Mutation p.R606T 0.28 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 11 102103251 102103251 G C YAP1 3'UTR 0.24 TCGA-VS-A958-01 11 102573850 102573850 C T MMP27 Splice_Site p.X114_splice 0.23 TCGA-VS-A958-01 11 103074408 103074408 C G DYNC2H1 Silent p.L2738L 0.22 TCGA-VS-A958-01 11 104034608 104034608 G A PDGFD Silent p.C16C 0.19 TCGA-VS-A958-01 11 1079729 1079729 G C MUC2 Missense_Mutation p.E316Q 0.19 benign(0.381) TCGA-VS-A958-01 11 110100176 110100176 G C RDX Intron 0.29 TCGA-VS-A958-01 11 111597550 111597550 C G SIK2 3'UTR 0.21 TCGA-VS-A958-01 11 111597562 111597562 C T SIK2 3'UTR 0.22 TCGA-VS-A958-01 11 114441920 114441920 G A NXPE4 Nonsense_Mutation p.Q459* 0.18 TCGA-VS-A958-01 11 117298831 117298831 A C DSCAML1 3'UTR 0.22 TCGA-VS-A958-01 11 118004225 118004225 C G SCN4B 3'UTR 0.23 TCGA-VS-A958-01 11 118004492 118004492 C G SCN4B 3'UTR 0.25 TCGA-VS-A958-01 11 119005576 119005576 G C HINFP 3'UTR 0.31 TCGA-VS-A958-01 11 119185719 119185719 C G MCAM Missense_Mutation p.R75P 0.25 tolerated(0.19) probably_damaging(0.966) TCGA-VS-A958-01 11 122733100 122733100 C G CRTAM Intron 0.33 TCGA-VS-A958-01 11 123887186 123887186 G A OR10G4 Missense_Mutation p.R302K 0.21 tolerated(0.39) benign(0.001) TCGA-VS-A958-01 11 1274169 1274169 C T MUC5B Missense_Mutation p.S5059L 0.29 unknown(0) TCGA-VS-A958-01 11 128843503 128843503 G C ARHGAP32 Intron 0.31 TCGA-VS-A958-01 11 129805018 129805018 C T PRDM10 Missense_Mutation p.E379K 0.26 tolerated(0.05) probably_damaging(0.991) TCGA-VS-A958-01 11 132206604 132206604 G A NTM 3'Flank 0.17 TCGA-VS-A958-01 11 17632163 17632163 C G OTOG Silent p.A1784A 0.19 TCGA-VS-A958-01 11 17660032 17660032 T C OTOG Silent p.C2622C 0.16 TCGA-VS-A958-01 11 1771724 1771724 C G IFITM10 5'UTR 0.26 TCGA-VS-A958-01 11 19077767 19077767 C T MRGPRX2 Silent p.R61R 0.32 TCGA-VS-A958-01 11 19954879 19954879 C T NAV2 Silent p.L386L 0.17 TCGA-VS-A958-01 11 2426168 2426168 C T TRPM5 Silent p.%3D 0.20 TCGA-VS-A958-01 11 290414 290414 G A ATHL1 Missense_Mutation p.G95D 0.21 tolerated(0.06) benign(0.013) TCGA-VS-A958-01 11 31123796 31123796 G C DCDC1 Missense_Mutation p.F637L 0.08 tolerated(0.29) benign(0.155) TCGA-VS-A958-01 11 33680366 33680366 G A KIAA1549L Missense_Mutation p.D1680N 0.27 tolerated(0.08) possibly_damaging(0.802) TCGA-VS-A958-01 11 34122482 34122482 C G CAPRIN1 3'UTR 0.22 TCGA-VS-A958-01 11 34478209 34478209 C T CAT Intron 0.24 TCGA-VS-A958-01 11 36293225 36293225 T A COMMD9 3'Flank 0.19 TCGA-VS-A958-01 11 36595364 36595364 C T RAG1 Silent p.I170I 0.29 TCGA-VS-A958-01 11 4471400 4471400 C G OR52K2 Silent p.L277L 0.27 TCGA-VS-A958-01 11 45924250 45924250 C T MAPK8IP1 Missense_Mutation p.S311F 0.19 deleterious(0) probably_damaging(0.968) TCGA-VS-A958-01 11 46418384 46418384 C G AMBRA1 3'UTR 0.19 TCGA-VS-A958-01 11 46419210 46419210 C T AMBRA1 Silent p.R1139R 0.27 TCGA-VS-A958-01 11 46419226 46419226 C T AMBRA1 Missense_Mutation p.R1134Q 0.23 tolerated_low_confidence(0.07) benign(0.011) TCGA-VS-A958-01 11 46419234 46419234 C T AMBRA1 Silent p.L1131L 0.19 TCGA-VS-A958-01 11 46722565 46722565 C T ZNF408 5'UTR 0.41 TCGA-VS-A958-01 11 46897097 46897097 C T LRP4 Missense_Mutation p.D1279N 0.31 tolerated(0.24) benign(0.01) TCGA-VS-A958-01 11 47698854 47698854 T C AGBL2 Missense_Mutation p.S706G 0.26 deleterious(0.04) benign(0.271) TCGA-VS-A958-01 11 5221573 5221573 C T OR51V1 Missense_Mutation p.E120K 0.33 deleterious(0) probably_damaging(0.967) TCGA-VS-A958-01 11 5291215 5291215 G A HBE1 5'UTR 0.23 TCGA-VS-A958-01 11 55563218 55563218 T A OR5D14 Missense_Mutation p.F63I 0.22 deleterious(0) possibly_damaging(0.843) TCGA-VS-A958-01 11 57564443 57564443 C G CTNND1 Missense_Mutation p.S312C 0.22 tolerated(0.21) possibly_damaging(0.808) TCGA-VS-A958-01 11 57564451 57564451 C G CTNND1 Missense_Mutation p.R315G 0.18 tolerated(0.41) possibly_damaging(0.458) TCGA-VS-A958-01 11 57564462 57564462 C T CTNND1 Silent p.L318L 0.15 TCGA-VS-A958-01 11 58378487 58378487 G C ZFP91 Missense_Mutation p.D228H 0.12 deleterious(0) probably_damaging(0.997) TCGA-VS-A958-01 11 59245282 59245282 C G OR4D10 Missense_Mutation p.S127C 0.22 tolerated(0.71) benign(0.009) TCGA-VS-A958-01 11 60161409 60161409 T C MS4A7 3'UTR 0.19 TCGA-VS-A958-01 11 60640681 60640681 C G ZP1 Missense_Mutation p.Q387E 0.15 deleterious(0.04) benign(0.16) TCGA-VS-A958-01 11 60694793 60694793 C G TMEM132A Missense_Mutation p.S73C 0.45 deleterious(0) probably_damaging(0.952) TCGA-VS-A958-01 11 6129185 6129185 C T OR56B4 Silent p.T59T 0.28 TCGA-VS-A958-01 11 6129654 6129654 G A OR56B4 Missense_Mutation p.D216N 0.29 deleterious(0.01) possibly_damaging(0.85) TCGA-VS-A958-01 11 61404676 61404676 G C RPLP0P2 RNA 0.19 TCGA-VS-A958-01 11 61495757 61495757 G A DAGLA Missense_Mutation p.E257K 0.24 tolerated(0.09) benign(0.023) TCGA-VS-A958-01 11 61512635 61512635 C T DAGLA 3'UTR 0.29 TCGA-VS-A958-01 11 62297007 62297007 C G AHNAK Missense_Mutation p.D1628H 0.07 probably_damaging(0.993) TCGA-VS-A958-01 11 62297173 62297173 C G AHNAK Missense_Mutation p.M1572I 0.05 probably_damaging(0.98) TCGA-VS-A958-01 11 62455872 62455872 C T LRRN4CL Missense_Mutation p.E37K 0.26 tolerated(0.71) benign(0.009) TCGA-VS-A958-01 11 62519921 62519921 C T ZBTB3 Missense_Mutation p.E456K 0.25 tolerated(0.28) benign(0.003) TCGA-VS-A958-01 11 63974848 63974848 G A FERMT3 Missense_Mutation p.M4I 0.11 tolerated(0.94) benign(0.002) TCGA-VS-A958-01 11 6425839 6425839 C T APBB1 Intron 0.25 TCGA-VS-A958-01 11 64428293 64428293 C T NRXN2 Missense_Mutation p.R706Q 0.16 deleterious(0.04) benign(0) TCGA-VS-A958-01 11 6453125 6453125 G A HPX Silent p.L320L 0.19 TCGA-VS-A958-01 11 65363115 65363115 G C KCNK7 Silent p.L43L 0.23 TCGA-VS-A958-01 11 6703337 6703337 C T MRPL17 3'UTR 0.22 TCGA-VS-A958-01 11 67223192 67223192 C T CABP4 Missense_Mutation p.R100C 0.37 deleterious(0.03) benign(0.027) TCGA-VS-A958-01 11 68197086 68197086 C G LRP5 Missense_Mutation p.I1227M 0.27 deleterious(0.01) possibly_damaging(0.505) TCGA-VS-A958-01 11 70017009 70017009 C T ANO1 Silent p.F738F 0.24 TCGA-VS-A958-01 11 73933406 73933406 G A PPME1 Missense_Mutation p.R113Q 0.07 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 11 76782707 76782707 C T CAPN5 Intron 0.10 TCGA-VS-A958-01 11 7960218 7960218 G C OR10A3 Missense_Mutation p.L284V 0.29 tolerated(0.1) possibly_damaging(0.615) TCGA-VS-A958-01 11 82644876 82644876 G A C11orf82 Silent p.Q832Q 0.24 TCGA-VS-A958-01 11 829476 829476 G C EFCAB4A Missense_Mutation p.E132Q 0.24 tolerated(0.09) benign(0.124) TCGA-VS-A958-01 11 8662592 8662592 G C TRIM66 Missense_Mutation p.Q297E 0.14 deleterious(0.02) benign(0.137) TCGA-VS-A958-01 11 86656839 86656839 C T FZD4 3'UTR 0.20 TCGA-VS-A958-01 11 94203702 94203702 G C MRE11A Missense_Mutation p.P318A 0.26 tolerated(0.12) benign(0.004) TCGA-VS-A958-01 12 100645967 100645967 G C DEPDC4 3'Flank 0.30 TCGA-VS-A958-01 12 102155037 102155037 G C GNPTAB Silent p.L1001L 0.43 TCGA-VS-A958-01 12 102795513 102795513 C T IGF1 3'UTR 0.13 TCGA-VS-A958-01 12 10560962 10560962 C T KLRC4 Silent p.Q102Q 0.26 TCGA-VS-A958-01 12 109849723 109849723 C T MYO1H Missense_Mutation p.P463S 0.17 tolerated(0.05) benign(0.068) TCGA-VS-A958-01 12 110969222 110969222 C G RAD9B Intron 0.29 TCGA-VS-A958-01 12 111052156 111052156 C G TCTN1 Missense_Mutation p.P57A 0.14 tolerated(0.19) benign(0.027) TCGA-VS-A958-01 12 111052178 111052178 C G TCTN1 Missense_Mutation p.S64C 0.16 deleterious(0.01) possibly_damaging(0.853) TCGA-VS-A958-01 12 11149600 11149600 G A TAS2R20 Missense_Mutation p.S292L 0.24 tolerated(0.28) benign(0.035) TCGA-VS-A958-01 12 11802994 11802994 C T ETV6 5'UTR 0.24 TCGA-VS-A958-01 12 120634712 120634712 G C RPLP0 Missense_Mutation p.S273C 0.29 deleterious(0) benign(0.336) TCGA-VS-A958-01 12 120882501 120882501 C T TRIAP1 3'UTR 0.21 TCGA-VS-A958-01 12 121779868 121779868 C G ANAPC5 Missense_Mutation p.E199Q 0.15 tolerated(0.06) benign(0.276) TCGA-VS-A958-01 12 1221420 1221420 C T ERC1 Nonsense_Mutation p.Q453* 0.25 TCGA-VS-A958-01 12 122261373 122261373 G A SETD1B Missense_Mutation p.E1587K 0.28 unknown(0) TCGA-VS-A958-01 12 122287630 122287630 C G HPD Missense_Mutation p.E161Q 0.21 tolerated(0.35) benign(0.002) TCGA-VS-A958-01 12 122669292 122669292 C T LRRC43 Missense_Mutation p.S126F 0.24 deleterious(0) probably_damaging(0.969) TCGA-VS-A958-01 12 122675977 122675977 G A LRRC43 Missense_Mutation p.G318R 0.28 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 12 12273696 12273696 C T LRP6 3'UTR 0.17 TCGA-VS-A958-01 12 123060409 123060409 G C KNTC1 Missense_Mutation p.G850A 0.22 deleterious(0) probably_damaging(0.995) TCGA-VS-A958-01 12 123738402 123738402 G A C12orf65 Missense_Mutation p.E61K 0.14 tolerated(0.12) benign(0.272) TCGA-VS-A958-01 12 124305127 124305127 G C DNAH10 Missense_Mutation p.G1216A 0.32 probably_damaging(0.922) TCGA-VS-A958-01 12 129373241 129373241 A T GLT1D1 Missense_Mutation p.N92I 0.26 tolerated(0.07) possibly_damaging(0.844) TCGA-VS-A958-01 12 18691209 18691209 G T PIK3C2G Missense_Mutation p.R1107I 0.18 deleterious(0) probably_damaging(0.995) TCGA-VS-A958-01 12 1919744 1919744 C T CACNA2D4 Missense_Mutation p.V875M 0.21 tolerated(0.25) benign(0.177) TCGA-VS-A958-01 12 19406929 19406929 G C PLEKHA5 Missense_Mutation p.D95H 0.08 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 12 20799682 20799682 C T PDE3A Intron 0.24 TCGA-VS-A958-01 12 22812005 22812005 C T ETNK1 Silent p.I247I 0.18 TCGA-VS-A958-01 12 27952483 27952483 A G KLHL42 3'UTR 0.26 TCGA-VS-A958-01 12 2921963 2921963 G A ITFG2 Missense_Mutation p.E13K 0.10 deleterious(0.01) benign(0.26) TCGA-VS-A958-01 12 4385287 4385287 C G CCND2 Silent p.V104V 0.22 TCGA-VS-A958-01 12 4430416 4430416 G A C12orf5 5'UTR 0.29 TCGA-VS-A958-01 12 47471197 47471197 C T AMIGO2 3'UTR 0.20 TCGA-VS-A958-01 12 49441780 49441780 G A KMT2D Nonsense_Mutation p.Q1402* 0.35 TCGA-VS-A958-01 12 50043647 50043647 C T FMNL3 Missense_Mutation p.E688K 0.27 tolerated(0.07) probably_damaging(0.986) TCGA-VS-A958-01 12 5026834 5026834 C G KCNA1 3'UTR 0.18 TCGA-VS-A958-01 12 50871964 50871964 C G LARP4 3'UTR 0.25 TCGA-VS-A958-01 12 51470315 51470315 C G CSRNP2 Missense_Mutation p.K10N 0.20 deleterious(0) probably_damaging(0.996) TCGA-VS-A958-01 12 51495752 51495752 C G TFCP2 Missense_Mutation p.D373H 0.26 deleterious(0) probably_damaging(0.954) TCGA-VS-A958-01 12 51511519 51511519 C T TFCP2 Missense_Mutation p.E96K 0.21 deleterious(0) probably_damaging(0.981) TCGA-VS-A958-01 12 52995109 52995109 G C KRT72 Missense_Mutation p.S43C 0.26 deleterious(0) benign(0.235) TCGA-VS-A958-01 12 54105116 54105116 C G CALCOCO1 3'Flank 0.26 TCGA-VS-A958-01 12 54423659 54423659 G A HOXC6 Silent p.S207S 0.27 TCGA-VS-A958-01 12 54423702 54423702 G C HOXC6 Missense_Mutation p.E222Q 0.27 tolerated_low_confidence(0.2) unknown(0) TCGA-VS-A958-01 12 54515440 54515440 C T RP11-834C11.3 RNA 0.24 TCGA-VS-A958-01 12 56811501 56811501 C A TIMELESS Nonstop_Mutation p.*1209Lext*48 0.25 TCGA-VS-A958-01 12 56915842 56915842 C T RBMS2 Missense_Mutation p.S12L 0.24 deleterious_low_confidence(0.01) benign(0.017) TCGA-VS-A958-01 12 57627443 57627443 C G SHMT2 Nonsense_Mutation p.S374* 0.17 TCGA-VS-A958-01 12 57630886 57630886 C G NDUFA4L2 5'UTR 0.23 TCGA-VS-A958-01 12 57910621 57910621 C T DDIT3 Missense_Mutation p.D184N 0.24 deleterious(0.03) possibly_damaging(0.856) TCGA-VS-A958-01 12 57919335 57919335 C G MBD6 Missense_Mutation p.S195C 0.22 deleterious_low_confidence(0) unknown(0) TCGA-VS-A958-01 12 57919806 57919806 C T MBD6 Missense_Mutation p.S352L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-VS-A958-01 12 58191750 58191750 G C AVIL Missense_Mutation p.S792C 0.26 deleterious(0.04) possibly_damaging(0.612) TCGA-VS-A958-01 12 68052977 68052977 G T DYRK2 3'UTR 0.28 TCGA-VS-A958-01 12 69202070 69202070 G A MDM2 5'UTR 0.24 TCGA-VS-A958-01 12 6948681 6948681 G C LEPREL2 3'UTR 0.33 TCGA-VS-A958-01 12 70188939 70188939 G C RAB3IP Missense_Mutation p.E251Q 0.29 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 12 70189094 70189094 G C RAB3IP Silent p.V302V 0.26 TCGA-VS-A958-01 12 7022157 7022157 C T LRRC23 Missense_Mutation p.S341L 0.09 tolerated_low_confidence(0.18) benign(0.005) TCGA-VS-A958-01 12 7982401 7982401 G C SLC2A14 Silent p.L181L 0.21 TCGA-VS-A958-01 12 8666184 8666184 C G CLEC4D 5'UTR 0.32 TCGA-VS-A958-01 12 94543362 94543362 C T PLXNC1 Silent p.I205I 0.19 TCGA-VS-A958-01 12 95451417 95451417 G C NR2C1 Nonsense_Mutation p.S232* 0.30 TCGA-VS-A958-01 12 97082758 97082758 C T C12orf55 Nonsense_Mutation p.Q2027* 0.22 TCGA-VS-A958-01 12 99056338 99056338 C T APAF1 Missense_Mutation p.S272L 0.16 tolerated(0.1) benign(0.31) TCGA-VS-A958-01 12 9913414 9913414 C T CD69 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-VS-A958-01 13 103386004 103386004 C T CCDC168 Silent p.G1052G 0.35 TCGA-VS-A958-01 13 103528222 103528222 G A ERCC5 Missense_Mutation p.R1177K 0.27 tolerated(0.35) unknown(0) TCGA-VS-A958-01 13 107196331 107196331 C T ARGLU1 3'UTR 0.21 TCGA-VS-A958-01 13 107220233 107220233 G A ARGLU1 Missense_Mutation p.S12F 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-VS-A958-01 13 111137258 111137258 G A COL4A2 Missense_Mutation p.R970Q 0.22 possibly_damaging(0.653) TCGA-VS-A958-01 13 111335454 111335454 C G CARS2 Missense_Mutation p.R200T 0.23 tolerated(0.38) possibly_damaging(0.449) TCGA-VS-A958-01 13 111992241 111992241 G A TEX29 Silent p.V67V 0.11 TCGA-VS-A958-01 13 112722239 112722239 G A SOX1 Nonsense_Mutation p.W89* 0.18 TCGA-VS-A958-01 13 113724431 113724431 C G MCF2L Missense_Mutation p.Q314E 0.25 deleterious(0.03) benign(0.003) TCGA-VS-A958-01 13 113978779 113978779 G A GRTP1 3'UTR 0.29 TCGA-VS-A958-01 13 114549523 114549523 G C GAS6 Nonsense_Mutation p.S107* 0.12 TCGA-VS-A958-01 13 29599330 29599330 G A MTUS2 Silent p.K175K 0.25 TCGA-VS-A958-01 13 33628236 33628236 G A KL Missense_Mutation p.M384I 0.25 tolerated(0.41) benign(0.026) TCGA-VS-A958-01 13 33634914 33634914 G A KL Silent p.K566K 0.16 TCGA-VS-A958-01 13 33634936 33634936 G C KL Missense_Mutation p.D574H 0.16 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 13 33635413 33635413 G C KL Missense_Mutation p.D733H 0.16 deleterious(0) possibly_damaging(0.814) TCGA-VS-A958-01 13 36909865 36909865 C T SPG20 Missense_Mutation p.E35K 0.22 deleterious(0) probably_damaging(0.972) TCGA-VS-A958-01 13 38164539 38164539 C T POSTN Silent p.P137P 0.24 TCGA-VS-A958-01 13 42623033 42623033 G A DGKH Missense_Mutation p.E42K 0.15 deleterious_low_confidence(0) benign(0.31) TCGA-VS-A958-01 13 42875920 42875920 C T AKAP11 Missense_Mutation p.S1013F 0.17 tolerated(0.29) benign(0.022) TCGA-VS-A958-01 13 48955394 48955394 C G RB1 Missense_Mutation p.Q504E 0.21 tolerated(0.35) benign(0.059) TCGA-VS-A958-01 13 48955578 48955578 C G RB1 Nonsense_Mutation p.S565* 0.25 TCGA-VS-A958-01 13 49037866 49037866 G C RB1 Splice_Site p.X703_splice 0.27 TCGA-VS-A958-01 13 50096227 50096227 C T PHF11 Missense_Mutation p.S185L 0.21 tolerated(0.11) benign(0.004) TCGA-VS-A958-01 13 50589153 50589153 C G TRIM13 3'Flank 0.18 TCGA-VS-A958-01 13 50590642 50590642 C G TRIM13 3'Flank 0.27 TCGA-VS-A958-01 13 50594516 50594516 G A KCNRG Missense_Mutation p.E249K 0.34 tolerated(0.06) benign(0.02) TCGA-VS-A958-01 13 53236822 53236822 C G SUGT1 Missense_Mutation p.Q155E 0.26 tolerated(1) benign(0.001) TCGA-VS-A958-01 13 73539415 73539415 G C PIBF1 Missense_Mutation p.D613H 0.22 tolerated(0.09) benign(0.344) TCGA-VS-A958-01 13 79191171 79191171 C T RNF219 Missense_Mutation p.R242Q 0.27 deleterious(0) probably_damaging(0.997) TCGA-VS-A958-01 13 79916801 79916801 G C RBM26 Missense_Mutation p.Q782E 0.23 tolerated(1) probably_damaging(0.99) TCGA-VS-A958-01 13 93879613 93879613 G A GPC6 5'UTR 0.19 TCGA-VS-A958-01 13 96205028 96205028 G C CLDN10 Missense_Mutation p.E7D 0.25 deleterious(0.01) possibly_damaging(0.7) TCGA-VS-A958-01 13 99896085 99896085 G C UBAC2 Splice_Site p.X54_splice 0.22 TCGA-VS-A958-01 14 100118982 100118982 C G HHIPL1 Missense_Mutation p.S226W 0.28 deleterious(0) probably_damaging(0.99) TCGA-VS-A958-01 14 100589926 100589926 G C EVL Missense_Mutation p.D137H 0.19 deleterious(0) possibly_damaging(0.83) TCGA-VS-A958-01 14 101350700 101350700 C T RTL1 Silent p.K142K 0.16 TCGA-VS-A958-01 14 102661343 102661343 C T WDR20 Silent p.F106F 0.31 TCGA-VS-A958-01 14 20813173 20813173 G C PARP2 Missense_Mutation p.Q43H 0.25 tolerated_low_confidence(0.11) benign(0.004) TCGA-VS-A958-01 14 20813569 20813569 G C PARP2 Missense_Mutation p.L86F 0.26 deleterious(0.03) benign(0.031) TCGA-VS-A958-01 14 21215993 21215993 G A EDDM3A Missense_Mutation p.G85E 0.22 deleterious(0.02) possibly_damaging(0.757) TCGA-VS-A958-01 14 21238717 21238717 A G EDDM3B Missense_Mutation p.I136M 0.39 tolerated(0.07) probably_damaging(0.995) TCGA-VS-A958-01 14 21238744 21238744 C T EDDM3B Silent p.I145I 0.34 TCGA-VS-A958-01 14 22934551 22934551 C G TRDC 3'UTR 0.30 TCGA-VS-A958-01 14 23005108 23005108 G A TRAJ8 Silent p.Q6Q 0.24 TCGA-VS-A958-01 14 24424273 24424273 C G DHRS4 Missense_Mutation p.A53G 0.31 tolerated(0.35) benign(0.277) TCGA-VS-A958-01 14 24424295 24424295 C G DHRS4 Silent p.V60V 0.29 TCGA-VS-A958-01 14 24614590 24614590 C T PSME2 Missense_Mutation p.E77K 0.23 tolerated(0.78) benign(0.049) TCGA-VS-A958-01 14 24615819 24615819 C G PSME2 5'UTR 0.27 TCGA-VS-A958-01 14 31404423 31404423 C T STRN3 Missense_Mutation p.E312K 0.27 deleterious(0) probably_damaging(0.98) TCGA-VS-A958-01 14 31605815 31605815 C G HECTD1 Missense_Mutation p.L1012F 0.23 deleterious(0) probably_damaging(0.996) TCGA-VS-A958-01 14 35036915 35036915 C G SNX6 Missense_Mutation p.E394Q 0.24 tolerated(0.08) probably_damaging(0.998) TCGA-VS-A958-01 14 35871602 35871602 C G NFKBIA Missense_Mutation p.E302Q 0.25 tolerated(0.1) benign(0.226) TCGA-VS-A958-01 14 36207825 36207825 C T RALGAPA1 Missense_Mutation p.R494Q 0.23 deleterious(0.05) benign(0.01) TCGA-VS-A958-01 14 38681499 38681499 G A SSTR1 3'UTR 0.16 TCGA-VS-A958-01 14 48143918 48143918 G A MDGA2 Missense_Mutation p.R28W 0.15 deleterious_low_confidence(0.04) unknown(0) TCGA-VS-A958-01 14 50088523 50088523 C T MGAT2 Silent p.F179F 0.33 TCGA-VS-A958-01 14 50805698 50805698 G A CDKL1 Silent p.F236F 0.24 TCGA-VS-A958-01 14 52196071 52196071 G A FRMD6 3'Flank 0.24 TCGA-VS-A958-01 14 53522571 53522571 G A DDHD1 Silent p.I684I 0.25 TCGA-VS-A958-01 14 55034815 55034815 G C SAMD4A Missense_Mutation p.E61Q 0.15 tolerated(0.21) probably_damaging(0.954) TCGA-VS-A958-01 14 55833520 55833520 C T ATG14 3'UTR 0.24 TCGA-VS-A958-01 14 56757079 56757079 G A PELI2 Missense_Mutation p.E201K 0.27 tolerated(0.44) benign(0.228) TCGA-VS-A958-01 14 57268817 57268817 G A OTX2 Missense_Mutation p.S177F 0.09 deleterious(0) possibly_damaging(0.863) TCGA-VS-A958-01 14 64804747 64804747 C T RP11-544I20.2 RNA 0.32 TCGA-VS-A958-01 14 64804757 64804757 C T RP11-544I20.2 RNA 0.32 TCGA-VS-A958-01 14 65233428 65233428 G C SPTB Intron 0.17 TCGA-VS-A958-01 14 66209120 66209120 G A FUT8 Missense_Mutation p.E574K 0.22 tolerated(0.43) benign(0.04) TCGA-VS-A958-01 14 69254593 69254593 C G ZFP36L1 3'UTR 0.31 TCGA-VS-A958-01 14 71227862 71227862 G A MAP3K9 Silent p.S286S 0.20 TCGA-VS-A958-01 14 71444502 71444502 G T PCNX Missense_Mutation p.S483I 0.17 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-VS-A958-01 14 71444508 71444508 C T PCNX Missense_Mutation p.S485F 0.19 tolerated(0.73) possibly_damaging(0.477) TCGA-VS-A958-01 14 71514611 71514611 C G PCNX Missense_Mutation p.I1416M 0.24 tolerated(0.12) benign(0.258) TCGA-VS-A958-01 14 75130129 75130129 C T AREL1 3'UTR 0.27 TCGA-VS-A958-01 14 75538444 75538444 G A ZC2HC1C Missense_Mutation p.E390K 0.13 tolerated(0.72) benign(0.022) TCGA-VS-A958-01 14 77914866 77914866 C T VIPAS39 Missense_Mutation p.D159N 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-VS-A958-01 14 80668756 80668756 G A DIO2 3'Flank 0.32 TCGA-VS-A958-01 14 89627295 89627295 G C FOXN3 3'UTR 0.46 TCGA-VS-A958-01 14 89627332 89627332 G C FOXN3 3'UTR 0.37 TCGA-VS-A958-01 14 93176092 93176092 C T LGMN Missense_Mutation p.M315I 0.30 deleterious(0.01) benign(0.027) TCGA-VS-A958-01 14 94185191 94185191 G A PRIMA1 3'UTR 0.26 TCGA-VS-A958-01 14 95562276 95562276 G A DICER1 Missense_Mutation p.H1661Y 0.29 tolerated(0.47) possibly_damaging(0.748) TCGA-VS-A958-01 14 96138526 96138526 G C TCL6 RNA 0.24 TCGA-VS-A958-01 14 96707001 96707001 C T BDKRB2 Silent p.F112F 0.19 TCGA-VS-A958-01 14 96852171 96852171 G C GSKIP 3'UTR 0.28 TCGA-VS-A958-01 14 97032352 97032352 G A PAPOLA 3'UTR 0.22 TCGA-VS-A958-01 15 100594255 100594255 G C ADAMTS17 Silent p.L714L 0.13 TCGA-VS-A958-01 15 28424070 28424070 G C HERC2 Silent p.L3042L 0.17 TCGA-VS-A958-01 15 29346141 29346141 G A APBA2 Silent p.V18V 0.22 TCGA-VS-A958-01 15 29393896 29393896 C T APBA2 Missense_Mutation p.S478L 0.19 deleterious(0.01) benign(0.142) TCGA-VS-A958-01 15 31358323 31358323 C T TRPM1 Missense_Mutation p.R266Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-VS-A958-01 15 32460296 32460296 G A CHRNA7 Silent p.G411G 0.16 TCGA-VS-A958-01 15 34525909 34525909 C G SLC12A6 3'UTR 0.32 TCGA-VS-A958-01 15 35198824 35198824 C G AQR Missense_Mutation p.E585Q 0.22 tolerated(0.53) benign(0.18) TCGA-VS-A958-01 15 40270319 40270319 G A EIF2AK4 Missense_Mutation p.E764K 0.23 tolerated(0.36) possibly_damaging(0.777) TCGA-VS-A958-01 15 40543205 40543205 C T C15orf56 3'UTR 0.33 TCGA-VS-A958-01 15 40861563 40861563 C G RPUSD2 Silent p.L9L 0.25 TCGA-VS-A958-01 15 42058297 42058297 C T MGA Missense_Mutation p.H2673Y 0.22 tolerated_low_confidence(0.18) benign(0.285) TCGA-VS-A958-01 15 42136666 42136666 C T PLA2G4B Intron 0.23 TCGA-VS-A958-01 15 42158101 42158101 C T SPTBN5 Missense_Mutation p.E2275K 0.26 probably_damaging(0.99) TCGA-VS-A958-01 15 43697465 43697465 G C TUBGCP4 3'UTR 0.13 TCGA-VS-A958-01 15 49418138 49418138 C T COPS2 3'Flank 0.38 TCGA-VS-A958-01 15 50903311 50903311 C T TRPM7 Missense_Mutation p.M753I 0.16 deleterious(0.04) benign(0.325) TCGA-VS-A958-01 15 51221337 51221337 C G AP4E1 Missense_Mutation p.S225C 0.25 deleterious(0) probably_damaging(0.981) TCGA-VS-A958-01 15 52635367 52635367 C T MYO5A Silent p.L1329L 0.21 TCGA-VS-A958-01 15 59172160 59172160 C G SLTM 3'UTR 0.31 TCGA-VS-A958-01 15 59406650 59406650 C T CCNB2 Missense_Mutation p.S92F 0.31 deleterious(0.01) benign(0.08) TCGA-VS-A958-01 15 59455447 59455447 C T MYO1E Missense_Mutation p.E846K 0.22 deleterious(0.02) possibly_damaging(0.676) TCGA-VS-A958-01 15 60648186 60648186 C T ANXA2 Missense_Mutation p.D172N 0.30 deleterious(0.01) benign(0.006) TCGA-VS-A958-01 15 62168033 62168033 C T VPS13C Silent p.Q3412Q 0.27 TCGA-VS-A958-01 15 62234061 62234061 C T VPS13C Missense_Mutation p.R1785K 0.22 tolerated(0.18) benign(0.005) TCGA-VS-A958-01 15 64496741 64496741 C G CSNK1G1 Missense_Mutation p.E300Q 0.25 deleterious(0.02) benign(0.435) TCGA-VS-A958-01 15 65739328 65739328 C G DPP8 Missense_Mutation p.R864T 0.21 deleterious(0) probably_damaging(0.997) TCGA-VS-A958-01 15 69238842 69238842 G A SPESP1 Missense_Mutation p.M323I 0.24 deleterious(0.01) possibly_damaging(0.73) TCGA-VS-A958-01 15 70961140 70961140 G A UACA Missense_Mutation p.P628L 0.22 deleterious(0) possibly_damaging(0.821) TCGA-VS-A958-01 15 72118889 72118889 C T MYO9A 3'UTR 0.22 TCGA-VS-A958-01 15 72119321 72119321 C T MYO9A Missense_Mutation p.R2416Q 0.21 tolerated_low_confidence(0.06) benign(0.029) TCGA-VS-A958-01 15 72119329 72119329 G C MYO9A Missense_Mutation p.S2413R 0.19 deleterious_low_confidence(0.01) benign(0.177) TCGA-VS-A958-01 15 74336666 74336666 G C PML Missense_Mutation p.E656Q 0.22 deleterious(0.04) probably_damaging(0.948) TCGA-VS-A958-01 15 74588172 74588172 G A CCDC33 Silent p.L391L 0.23 TCGA-VS-A958-01 15 75499731 75499731 G C C15orf39 Missense_Mutation p.E448Q 0.25 deleterious(0.01) possibly_damaging(0.607) TCGA-VS-A958-01 15 75702584 75702584 G A SIN3A Missense_Mutation p.P351L 0.39 deleterious(0.05) probably_damaging(0.993) TCGA-VS-A958-01 15 75941351 75941351 C T SNX33 5'UTR 0.25 TCGA-VS-A958-01 15 75969559 75969559 G C CSPG4 Silent p.L1767L 0.07 TCGA-VS-A958-01 15 76629270 76629270 G A ISL2 Missense_Mutation p.D16N 0.19 deleterious(0) benign(0.049) TCGA-VS-A958-01 15 77085639 77085639 C A SCAPER Intron 0.20 TCGA-VS-A958-01 15 78793729 78793729 G C IREB2 3'UTR 0.24 TCGA-VS-A958-01 15 78933483 78933483 G A CHRNB4 5'UTR 0.50 TCGA-VS-A958-01 15 82336559 82336559 G C MEX3B Missense_Mutation p.R218G 0.12 deleterious(0) probably_damaging(0.991) TCGA-VS-A958-01 15 82336629 82336629 G A MEX3B Silent p.I194I 0.17 TCGA-VS-A958-01 15 85180633 85180633 G C RP11-182J1.1 5'Flank 0.22 TCGA-VS-A958-01 15 85411951 85411951 C T ALPK3 3'UTR 0.23 TCGA-VS-A958-01 15 89398752 89398752 G C ACAN Missense_Mutation p.G979A 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A958-01 15 90168502 90168502 C G TICRR Missense_Mutation p.S1654C 0.27 deleterious(0.02) benign(0.103) TCGA-VS-A958-01 15 90168634 90168634 C T TICRR Missense_Mutation p.S1698F 0.25 deleterious(0.04) possibly_damaging(0.61) TCGA-VS-A958-01 15 90890950 90890950 C T GABARAPL3 3'UTR 0.24 TCGA-VS-A958-01 15 91303900 91303900 G C BLM Missense_Mutation p.D433H 0.28 tolerated(0.07) benign(0.372) TCGA-VS-A958-01 15 91328192 91328192 G C BLM Missense_Mutation p.D902H 0.20 deleterious(0) probably_damaging(0.996) TCGA-VS-A958-01 15 91358414 91358414 C G BLM Missense_Mutation p.Q1387E 0.26 tolerated(0.94) benign(0.003) TCGA-VS-A958-01 15 93571117 93571117 C G CHD2 3'UTR 0.14 TCGA-VS-A958-01 16 10625904 10625904 G A EMP2 3'UTR 0.22 TCGA-VS-A958-01 16 10775977 10775977 G A TEKT5 Nonsense_Mutation p.Q246* 0.19 TCGA-VS-A958-01 16 11097066 11097066 G C CLEC16A Missense_Mutation p.E403Q 0.15 tolerated(0.11) benign(0.258) TCGA-VS-A958-01 16 1270993 1270993 A T CACNA1H Nonstop_Mutation p.*2354Lext*36 0.23 TCGA-VS-A958-01 16 1463963 1463963 G A UNKL Silent p.F57F 0.58 TCGA-VS-A958-01 16 15982447 15982447 C T FOPNL 5'UTR 0.31 TCGA-VS-A958-01 16 16180716 16180716 G C ABCC1 Silent p.V776V 0.29 TCGA-VS-A958-01 16 17196533 17196533 C T XYLT1 3'UTR 0.16 TCGA-VS-A958-01 16 1990842 1990842 C A MSRB1 Missense_Mutation p.G86C 0.14 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 16 20935421 20935421 C T LYRM1 Missense_Mutation p.H118Y 0.29 tolerated(0.52) benign(0.012) TCGA-VS-A958-01 16 21215693 21215693 C G ZP2 Silent p.L242L 0.19 TCGA-VS-A958-01 16 2325892 2325892 C T ABCA3 3'UTR 0.26 TCGA-VS-A958-01 16 23634395 23634395 C T PALB2 Missense_Mutation p.G964E 0.28 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 16 26147167 26147167 G A HS3ST4 Silent p.L323L 0.25 TCGA-VS-A958-01 16 26147345 26147345 G C HS3ST4 Missense_Mutation p.E383Q 0.23 tolerated(0.09) benign(0.219) TCGA-VS-A958-01 16 26147431 26147431 G A HS3ST4 Silent p.K411K 0.16 TCGA-VS-A958-01 16 26147465 26147465 G A HS3ST4 Missense_Mutation p.D423N 0.18 tolerated(0.06) possibly_damaging(0.856) TCGA-VS-A958-01 16 2672727 2672727 G - PDPK2 RNA 0.14 TCGA-VS-A958-01 16 28508060 28508060 G A APOBR Silent p.L566L 0.28 TCGA-VS-A958-01 16 28509090 28509090 G A APOBR Missense_Mutation p.E910K 0.16 tolerated(0.09) benign(0) TCGA-VS-A958-01 16 28845383 28845383 C T ATXN2L Intron 0.15 TCGA-VS-A958-01 16 29996789 29996789 G A TAOK2 Missense_Mutation p.E560K 0.25 deleterious(0.03) possibly_damaging(0.615) TCGA-VS-A958-01 16 3024394 3024394 A G PKMYT1 Missense_Mutation p.V335A 0.27 deleterious(0.02) probably_damaging(0.956) TCGA-VS-A958-01 16 30732535 30732535 G C SRCAP Silent p.L1093L 0.16 TCGA-VS-A958-01 16 30744638 30744638 C G SRCAP Silent p.L2055L 0.30 TCGA-VS-A958-01 16 31102464 31102464 C T VKORC1 Silent p.K161K 0.38 TCGA-VS-A958-01 16 31391135 31391135 G C ITGAX Missense_Mutation p.E976Q 0.16 tolerated(0.5) benign(0.371) TCGA-VS-A958-01 16 4310208 4310208 C T TFAP4 Silent p.V235V 0.29 TCGA-VS-A958-01 16 48399381 48399381 C G SIAH1 Missense_Mutation p.G3A 0.23 tolerated_low_confidence(1) unknown(0) TCGA-VS-A958-01 16 48576875 48576875 G T N4BP1 Silent p.I877I 0.37 TCGA-VS-A958-01 16 5094567 5094567 G C C16orf89 3'UTR 0.32 TCGA-VS-A958-01 16 51174614 51174614 G A SALL1 Nonsense_Mutation p.Q507* 0.08 TCGA-VS-A958-01 16 56703818 56703818 G A MT1H Missense_Mutation p.E8K 0.08 tolerated(0.15) unknown(0) TCGA-VS-A958-01 16 57689395 57689395 G A GPR56 Missense_Mutation p.E285K 0.15 tolerated(0.11) benign(0.423) TCGA-VS-A958-01 16 58319860 58319860 C T PRSS54 Missense_Mutation p.G168E 0.17 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 16 65032579 65032579 G A CDH11 Missense_Mutation p.R137W 0.24 deleterious(0) probably_damaging(0.955) TCGA-VS-A958-01 16 66887717 66887717 C T CA7 3'UTR 0.26 TCGA-VS-A958-01 16 67974005 67974005 G C LCAT Silent p.R375R 0.31 TCGA-VS-A958-01 16 67976308 67976308 G A LCAT Missense_Mutation p.P236S 0.22 deleterious(0.01) probably_damaging(0.952) TCGA-VS-A958-01 16 67979697 67979697 C G SLC12A4 Missense_Mutation p.M941I 0.31 tolerated(0.12) possibly_damaging(0.661) TCGA-VS-A958-01 16 70710846 70710846 C A MTSS1L Missense_Mutation p.W256C 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A958-01 16 70834876 70834876 G A VAC14 5'UTR 0.24 TCGA-VS-A958-01 16 715400 715400 G A WDR90 Intron 0.57 TCGA-VS-A958-01 16 74336136 74336136 G T PSMD7 Silent p.P128P 0.20 TCGA-VS-A958-01 16 75575253 75575253 G C TMEM231 Silent p.V284V 0.28 TCGA-VS-A958-01 16 81095112 81095112 G A C16orf46 Missense_Mutation p.S281F 0.23 tolerated(1) benign(0.001) TCGA-VS-A958-01 16 81208204 81208204 G A PKD1L2 Missense_Mutation p.P223S 0.30 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-VS-A958-01 16 825247 825247 G A MSLNL Silent p.F460F 0.12 TCGA-VS-A958-01 16 84911091 84911091 G C CRISPLD2 Missense_Mutation p.E402Q 0.24 tolerated(0.45) benign(0.021) TCGA-VS-A958-01 16 87678618 87678618 G C JPH3 Missense_Mutation p.Q379H 0.33 deleterious(0) probably_damaging(0.971) TCGA-VS-A958-01 16 8844285 8844285 G C ABAT Missense_Mutation p.E69Q 0.23 tolerated(0.29) benign(0.003) TCGA-VS-A958-01 16 88500836 88500836 G C ZNF469 Missense_Mutation p.D2292H 0.21 possibly_damaging(0.79) TCGA-VS-A958-01 16 88872037 88872037 G A CDT1 Missense_Mutation p.M226I 0.11 deleterious(0.03) possibly_damaging(0.821) TCGA-VS-A958-01 16 89169150 89169150 G C ACSF3 Missense_Mutation p.E269Q 0.28 tolerated(0.17) benign(0.144) TCGA-VS-A958-01 16 89603409 89603409 G C SPG7 Intron 0.14 TCGA-VS-A958-01 17 1559764 1559764 G A PRPF8 Silent p.L1905L 0.32 TCGA-VS-A958-01 17 15935611 15935611 C T NCOR1 Silent p.%3D 0.25 TCGA-VS-A958-01 17 18034573 18034573 C G MYO15A Silent p.L1353L 0.33 TCGA-VS-A958-01 17 18428924 18428924 G A FAM106A 3'UTR 0.11 TCGA-VS-A958-01 17 20914614 20914614 G C USP22 Missense_Mutation p.S318C 0.39 deleterious(0) probably_damaging(0.998) TCGA-VS-A958-01 17 25932493 25932493 G C KSR1 Missense_Mutation p.E435Q 0.20 tolerated(0.09) probably_damaging(0.968) TCGA-VS-A958-01 17 27004769 27004769 G A SUPT6H Missense_Mutation p.E312K 0.23 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 17 27005168 27005168 G C SUPT6H Missense_Mutation p.K358N 0.21 deleterious(0) probably_damaging(0.991) TCGA-VS-A958-01 17 27209412 27209412 C T FLOT2 Silent p.V174V 0.28 TCGA-VS-A958-01 17 28849747 28849747 C T GOSR1 3'UTR 0.22 TCGA-VS-A958-01 17 29645890 29645890 G C EVI2A Missense_Mutation p.Q71E 0.06 deleterious(0.04) benign(0.006) TCGA-VS-A958-01 17 30348562 30348562 G C LRRC37B Missense_Mutation p.E133Q 0.19 deleterious(0.02) benign(0.011) TCGA-VS-A958-01 17 30349240 30349240 G C LRRC37B Missense_Mutation p.E359Q 0.21 tolerated(0.07) probably_damaging(0.918) TCGA-VS-A958-01 17 30815731 30815731 G C CDK5R1 3'UTR 0.23 TCGA-VS-A958-01 17 31076014 31076014 G C MYO1D Nonsense_Mutation p.S493* 0.21 TCGA-VS-A958-01 17 3181311 3181311 G A OR3A2 Nonsense_Mutation p.Q307* 0.28 TCGA-VS-A958-01 17 32647944 32647944 G A CCL8 3'UTR 0.27 TCGA-VS-A958-01 17 32956085 32956085 C G TMEM132E Missense_Mutation p.F310L 0.23 tolerated(0.34) benign(0.26) TCGA-VS-A958-01 17 33901864 33901864 C G PEX12 3'UTR 0.23 TCGA-VS-A958-01 17 34070415 34070415 C G RASL10B 3'UTR 0.31 TCGA-VS-A958-01 17 34313677 34313677 G C CCL14 Missense_Mutation p.I3M 0.33 deleterious(0) benign(0.295) TCGA-VS-A958-01 17 34340867 34340867 G C CCL23 Missense_Mutation p.I73M 0.21 tolerated(0.18) benign(0.037) TCGA-VS-A958-01 17 35486398 35486398 G C ACACA Nonsense_Mutation p.S1946* 0.24 TCGA-VS-A958-01 17 36462543 36462543 G C MRPL45 Missense_Mutation p.D136H 0.21 tolerated(0.06) possibly_damaging(0.852) TCGA-VS-A958-01 17 36894682 36894682 C T PCGF2 Missense_Mutation p.R167Q 0.16 tolerated(0.51) benign(0.01) TCGA-VS-A958-01 17 37186702 37186702 C G CTD-2206N4.2 5'Flank 0.20 TCGA-VS-A958-01 17 3721648 3721648 C G C17orf85 Missense_Mutation p.E407Q 0.35 deleterious(0) probably_damaging(0.979) TCGA-VS-A958-01 17 37650796 37650796 G C CDK12 Missense_Mutation p.K756N 0.26 probably_damaging(0.999) TCGA-VS-A958-01 17 38652433 38652433 G A TNS4 Missense_Mutation p.S82F 0.20 deleterious(0.03) benign(0.202) TCGA-VS-A958-01 17 39674750 39674750 C T KRT15 Silent p.Q110Q 0.21 TCGA-VS-A958-01 17 39766137 39766137 G A KRT16 3'UTR 0.24 TCGA-VS-A958-01 17 40731570 40731570 C G FAM134C 3'UTR 0.29 TCGA-VS-A958-01 17 41244746 41244746 C T BRCA1 Silent p.Q934Q 0.23 TCGA-VS-A958-01 17 41245255 41245255 C G BRCA1 Missense_Mutation p.E765Q 0.24 deleterious(0.01) probably_damaging(0.949) TCGA-VS-A958-01 17 41283285 41283285 G C NBR2 Intron 0.26 TCGA-VS-A958-01 17 41348575 41348575 G C NBR1 Missense_Mutation p.E610Q 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-VS-A958-01 17 42092312 42092312 C T TMEM101 Silent p.S3S 0.24 TCGA-VS-A958-01 17 42148261 42148261 G A G6PC3 5'UTR 0.22 TCGA-VS-A958-01 17 43923597 43923597 C G SPPL2C Missense_Mutation p.S442C 0.08 deleterious(0) probably_damaging(0.992) TCGA-VS-A958-01 17 46930302 46930302 G A CALCOCO2 Silent p.K304K 0.28 TCGA-VS-A958-01 17 47130759 47130759 G A IGF2BP1 3'UTR 0.31 TCGA-VS-A958-01 17 48068019 48068019 G A DLX3 3'UTR 0.23 TCGA-VS-A958-01 17 48432356 48432356 G C XYLT2 Missense_Mutation p.E316Q 0.16 tolerated(0.11) probably_damaging(0.947) TCGA-VS-A958-01 17 53851120 53851120 G C PCTP Missense_Mutation p.M125I 0.30 tolerated(0.22) benign(0) TCGA-VS-A958-01 17 56051263 56051263 C G VEZF1 3'UTR 0.28 TCGA-VS-A958-01 17 56051571 56051571 C T VEZF1 3'UTR 0.20 TCGA-VS-A958-01 17 57643108 57643108 G A DHX40 Missense_Mutation p.E26K 0.07 tolerated(0.65) benign(0.008) TCGA-VS-A958-01 17 59999159 59999159 G A INTS2 Silent p.F162F 0.23 TCGA-VS-A958-01 17 60814435 60814435 C T MARCH10 Missense_Mutation p.R265K 0.27 tolerated(0.16) benign(0.181) TCGA-VS-A958-01 17 61771295 61771295 G C MAP3K3 3'UTR 0.32 TCGA-VS-A958-01 17 61780855 61780855 C T STRADA 3'UTR 0.19 TCGA-VS-A958-01 17 65028993 65028993 C A CACNG4 3'UTR 0.31 TCGA-VS-A958-01 17 66253202 66253202 C G AMZ2 3'UTR 0.42 TCGA-VS-A958-01 17 66526662 66526662 C T PRKAR1A 3'UTR 0.08 TCGA-VS-A958-01 17 66989183 66989183 C T ABCA9 Missense_Mutation p.E1200K 0.28 tolerated(0.75) benign(0.039) TCGA-VS-A958-01 17 70118974 70118974 G A SOX9 Silent p.V182V 0.27 TCGA-VS-A958-01 17 70119839 70119839 G A SOX9 Missense_Mutation p.D281N 0.24 deleterious(0) possibly_damaging(0.526) TCGA-VS-A958-01 17 72306215 72306215 C G DNAI2 Missense_Mutation p.C469W 0.25 deleterious(0) possibly_damaging(0.889) TCGA-VS-A958-01 17 7232468 7232468 G A NEURL4 Missense_Mutation p.S55L 0.38 tolerated(0.08) possibly_damaging(0.888) TCGA-VS-A958-01 17 7320771 7320771 G A NLGN2 Missense_Mutation p.G721S 0.43 tolerated_low_confidence(0.26) benign(0) TCGA-VS-A958-01 17 73258942 73258942 G A MRPS7 Missense_Mutation p.M111I 0.06 tolerated(0.32) benign(0.007) TCGA-VS-A958-01 17 73624459 73624459 C G RECQL5 Missense_Mutation p.E882Q 0.32 tolerated(0.22) benign(0.011) TCGA-VS-A958-01 17 74477459 74477459 C T RHBDF2 Missense_Mutation p.E50K 0.24 tolerated_low_confidence(0.51) benign(0.001) TCGA-VS-A958-01 17 74731182 74731182 C T SRSF2 3'UTR 0.15 TCGA-VS-A958-01 17 7474754 7474754 C A SENP3 Missense_Mutation p.R560S 0.33 deleterious(0) probably_damaging(0.963) TCGA-VS-A958-01 17 77093786 77093786 C G RBFOX3 Missense_Mutation p.E204Q 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.544) TCGA-VS-A958-01 17 79205345 79205345 G A ENTHD2 Intron 0.24 TCGA-VS-A958-01 17 79226463 79226463 C T SLC38A10 Missense_Mutation p.E493K 0.24 deleterious(0) possibly_damaging(0.777) TCGA-VS-A958-01 17 79618069 79618069 G A PDE6G 3'UTR 0.21 TCGA-VS-A958-01 17 80211078 80211078 G A CSNK1D Missense_Mutation p.R127W 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-VS-A958-01 17 80708512 80708512 C G FN3K Missense_Mutation p.P271A 0.28 tolerated(0.12) benign(0.085) TCGA-VS-A958-01 17 80708675 80708675 C G FN3K 3'UTR 0.50 TCGA-VS-A958-01 17 8160269 8160269 C G PFAS Missense_Mutation p.L355V 0.41 deleterious(0) probably_damaging(0.994) TCGA-VS-A958-01 17 8661818 8661818 G A SPDYE4 5'UTR 0.39 TCGA-VS-A958-01 17 9460808 9460808 T A STX8 Missense_Mutation p.K52M 0.07 deleterious(0.01) probably_damaging(0.984) TCGA-VS-A958-01 17 961239 961239 C T ABR Missense_Mutation p.R451K 0.31 tolerated(0.13) benign(0.023) TCGA-VS-A958-01 18 14104736 14104736 G A ZNF519 3'UTR 0.29 TCGA-VS-A958-01 18 18533574 18533574 G A ROCK1 Silent p.F1342F 0.19 TCGA-VS-A958-01 18 19116062 19116062 G C ESCO1 Missense_Mutation p.L710V 0.27 deleterious(0) probably_damaging(0.925) TCGA-VS-A958-01 18 19192307 19192307 C T SNRPD1 5'UTR 0.23 TCGA-VS-A958-01 18 19192308 19192308 C T SNRPD1 5'UTR 0.23 TCGA-VS-A958-01 18 21053507 21053507 C T RIOK3 Silent p.F310F 0.06 TCGA-VS-A958-01 18 21752440 21752440 C A OSBPL1A Nonsense_Mutation p.E701* 0.24 TCGA-VS-A958-01 18 24510672 24510672 G A CHST9 Intron 0.19 TCGA-VS-A958-01 18 25727671 25727671 C T CDH2 Silent p.S46S 0.25 TCGA-VS-A958-01 18 29110980 29110980 G C DSG2 Missense_Mutation p.D349H 0.30 deleterious(0.01) probably_damaging(0.968) TCGA-VS-A958-01 18 29125984 29125984 G C DSG2 Missense_Mutation p.E879Q 0.31 tolerated(0.09) possibly_damaging(0.448) TCGA-VS-A958-01 18 3729288 3729288 C A DLGAP1 Missense_Mutation p.D480Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 18 43531172 43531172 G C EPG5 Missense_Mutation p.L429V 0.15 tolerated(0.28) benign(0.003) TCGA-VS-A958-01 18 44038391 44038391 C G RNF165 3'UTR 0.24 TCGA-VS-A958-01 18 45367651 45367651 G A SMAD2 3'UTR 0.20 TCGA-VS-A958-01 18 48190668 48190668 C T MAPK4 Missense_Mutation p.R114C 0.32 deleterious(0) benign(0.015) TCGA-VS-A958-01 18 48556677 48556677 C T SMAD4 5'UTR 0.30 TCGA-VS-A958-01 18 60639933 60639933 C T PHLPP1 Silent p.V1249V 0.26 TCGA-VS-A958-01 18 74536159 74536159 G C ZNF236 5'UTR 0.32 TCGA-VS-A958-01 18 7567766 7567766 C G PTPRM 5'UTR 0.19 TCGA-VS-A958-01 18 8718632 8718632 G C SOGA2 Missense_Mutation p.E62Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 18 9102702 9102702 C T NDUFV2 5'UTR 0.36 TCGA-VS-A958-01 19 10080271 10080271 G A COL5A3 Nonsense_Mutation p.R1360* 0.18 TCGA-VS-A958-01 19 10426643 10426643 C G FDX1L Silent p.V10V 0.17 TCGA-VS-A958-01 19 10662844 10662844 G A ATG4D Intron 0.27 TCGA-VS-A958-01 19 11200069 11200069 C T LDLR 5'UTR 0.26 TCGA-VS-A958-01 19 11352873 11352873 C T DOCK6 Silent p.K497K 0.24 TCGA-VS-A958-01 19 11979428 11979428 C T ZNF439 3'UTR 0.22 TCGA-VS-A958-01 19 12090214 12090214 C G ZNF763 3'UTR 0.30 TCGA-VS-A958-01 19 12502798 12502798 C T ZNF799 Silent p.E138E 0.22 TCGA-VS-A958-01 19 12856510 12856510 C T ASNA1 Silent p.I182I 0.30 TCGA-VS-A958-01 19 12910732 12910732 G A PRDX2 Missense_Mutation p.S151F 0.24 deleterious(0.03) benign(0.207) TCGA-VS-A958-01 19 13265354 13265354 C G IER2 3'UTR 0.08 TCGA-VS-A958-01 19 13265620 13265620 C G IER2 3'UTR 0.08 TCGA-VS-A958-01 19 13409572 13409572 G A CACNA1A Missense_Mutation p.R959C 0.36 probably_damaging(0.942) TCGA-VS-A958-01 19 13428120 13428120 C G CACNA1A Missense_Mutation p.R454P 0.24 probably_damaging(0.933) TCGA-VS-A958-01 19 14023192 14023192 G A CC2D1A Missense_Mutation p.D85N 0.16 tolerated(0.25) possibly_damaging(0.697) TCGA-VS-A958-01 19 14024353 14024353 G A CC2D1A Missense_Mutation p.R217K 0.22 tolerated(0.92) benign(0.009) TCGA-VS-A958-01 19 1453477 1453477 C G APC2 Missense_Mutation p.P94A 0.25 benign(0.141) TCGA-VS-A958-01 19 15483725 15483725 G C AKAP8 Silent p.G266G 0.19 TCGA-VS-A958-01 19 16259657 16259657 G C HSH2D Intron 0.29 TCGA-VS-A958-01 19 16536062 16536062 G A EPS15L1 Silent p.L208L 0.36 TCGA-VS-A958-01 19 17405253 17405253 G C ABHD8 Missense_Mutation p.F331L 0.32 deleterious(0.02) benign(0.246) TCGA-VS-A958-01 19 17531399 17531399 C G MVB12A Missense_Mutation p.P81R 0.27 deleterious(0.01) possibly_damaging(0.747) TCGA-VS-A958-01 19 17571369 17571369 C T NXNL1 Missense_Mutation p.E104K 0.37 tolerated(0.47) benign(0.033) TCGA-VS-A958-01 19 19136215 19136215 C T SUGP2 Missense_Mutation p.M314I 0.28 deleterious(0.04) benign(0.04) TCGA-VS-A958-01 19 21120034 21120034 C T ZNF85 Intron 0.33 TCGA-VS-A958-01 19 33642106 33642106 C G WDR88 Missense_Mutation p.I233M 0.25 deleterious(0.05) possibly_damaging(0.793) TCGA-VS-A958-01 19 35176528 35176528 C T ZNF302 3'UTR 0.16 TCGA-VS-A958-01 19 35524735 35524735 C G SCN1B Silent p.L180L 0.34 TCGA-VS-A958-01 19 36124919 36124919 G A RBM42 Missense_Mutation p.E339K 0.19 tolerated(0.11) unknown(0) TCGA-VS-A958-01 19 36134653 36134653 G A ETV2 Missense_Mutation p.R238Q 0.18 tolerated(0.05) probably_damaging(0.981) TCGA-VS-A958-01 19 36582211 36582211 C T WDR62 Missense_Mutation p.S715L 0.20 deleterious(0) possibly_damaging(0.599) TCGA-VS-A958-01 19 37660865 37660865 C T ZNF585A 5'UTR 0.31 TCGA-VS-A958-01 19 38159839 38159839 C G ZNF781 3'UTR 0.21 TCGA-VS-A958-01 19 38973736 38973736 G A RYR1 Missense_Mutation p.E1564K 0.14 probably_damaging(0.931) TCGA-VS-A958-01 19 38996031 38996031 C T RYR1 Missense_Mutation p.S2798L 0.37 benign(0.021) TCGA-VS-A958-01 19 39062907 39062907 C G RYR1 Silent p.L4665L 0.18 TCGA-VS-A958-01 19 39090580 39090580 G A MAP4K1 Missense_Mutation p.L552F 0.35 deleterious(0) probably_damaging(0.968) TCGA-VS-A958-01 19 39399395 39399395 C T NFKBIB Missense_Mutation p.H332Y 0.28 tolerated(0.07) probably_damaging(0.977) TCGA-VS-A958-01 19 40395950 40395950 A T FCGBP Missense_Mutation p.C2483S 0.17 benign(0.001) TCGA-VS-A958-01 19 41292788 41292788 C G RAB4B Missense_Mutation p.Q188E 0.14 deleterious(0.02) benign(0.045) TCGA-VS-A958-01 19 41944173 41944173 C G ATP5SL Silent p.L61L 0.06 TCGA-VS-A958-01 19 42314883 42314883 C G CEACAM3 Missense_Mutation p.S214C 0.08 deleterious(0) possibly_damaging(0.869) TCGA-VS-A958-01 19 42573075 42573075 T A ZNF574 5'Flank 0.29 TCGA-VS-A958-01 19 42752745 42752745 C T ERF Missense_Mutation p.E507K 0.21 deleterious_low_confidence(0) benign(0) TCGA-VS-A958-01 19 42879967 42879967 C G MEGF8 Missense_Mutation p.I2459M 0.30 deleterious(0) probably_damaging(0.932) TCGA-VS-A958-01 19 43766210 43766210 G A PSG9 Missense_Mutation p.P171S 0.10 tolerated(0.05) benign(0.26) TCGA-VS-A958-01 19 43864547 43864547 C G CD177 3'UTR 0.35 TCGA-VS-A958-01 19 44096284 44096284 G A IRGQ Missense_Mutation p.T589I 0.20 deleterious(0) probably_damaging(0.994) TCGA-VS-A958-01 19 44117811 44117811 G A SRRM5 Missense_Mutation p.R513K 0.19 tolerated(0.14) possibly_damaging(0.801) TCGA-VS-A958-01 19 44352455 44352455 G A ZNF283 Missense_Mutation p.E568K 0.18 tolerated(0.06) benign(0.369) TCGA-VS-A958-01 19 44377106 44377106 G A ZNF404 Silent p.F420F 0.10 TCGA-VS-A958-01 19 44679244 44679244 G T ZNF226 Intron 0.18 TCGA-VS-A958-01 19 44679537 44679537 G C ZNF226 Intron 0.23 TCGA-VS-A958-01 19 44679655 44679655 G C ZNF226 Missense_Mutation p.E80D 0.24 tolerated(1) benign(0.001) TCGA-VS-A958-01 19 44679824 44679824 G A ZNF226 Missense_Mutation p.E137K 0.24 deleterious(0.04) benign(0.002) TCGA-VS-A958-01 19 44936420 44936420 G A ZNF229 Missense_Mutation p.S72L 0.33 tolerated(0.07) probably_damaging(0.995) TCGA-VS-A958-01 19 4512784 4512784 G A PLIN4 Silent p.V382V 0.35 TCGA-VS-A958-01 19 45381874 45381874 G A PVRL2 Intron 0.13 TCGA-VS-A958-01 19 45594556 45594556 G C GEMIN7 3'UTR 0.18 TCGA-VS-A958-01 19 46191776 46191776 C T SNRPD2 Silent p.Q17Q 0.40 TCGA-VS-A958-01 19 46393552 46393552 G A MYPOP 3'UTR 0.24 TCGA-VS-A958-01 19 47156297 47156297 C T DACT3 Silent p.Q95Q 0.41 TCGA-VS-A958-01 19 47192823 47192823 C G PRKD2 Missense_Mutation p.E648Q 0.10 deleterious(0.01) benign(0.037) TCGA-VS-A958-01 19 47856256 47856256 C G DHX34 5'UTR 0.30 TCGA-VS-A958-01 19 47918320 47918320 C T MEIS3 Silent p.L145L 0.12 TCGA-VS-A958-01 19 47960611 47960611 G A SLC8A2 Missense_Mutation p.R306C 0.36 deleterious(0) possibly_damaging(0.634) TCGA-VS-A958-01 19 47960819 47960819 G T SLC8A2 Missense_Mutation p.F236L 0.25 deleterious(0) benign(0.036) TCGA-VS-A958-01 19 48043087 48043087 C T ZNF541 Missense_Mutation p.E891K 0.35 tolerated(0.31) benign(0.018) TCGA-VS-A958-01 19 48229386 48229386 G A EHD2 Missense_Mutation p.E274K 0.20 deleterious(0) benign(0.07) TCGA-VS-A958-01 19 48543902 48543902 C G CABP5 Missense_Mutation p.E66D 0.33 deleterious(0.03) possibly_damaging(0.858) TCGA-VS-A958-01 19 48624500 48624500 C T LIG1 Missense_Mutation p.R771Q 0.17 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 19 49143376 49143376 G A CA11 Silent p.I149I 0.20 TCGA-VS-A958-01 19 49206362 49206362 C G FUT2 Nonsense_Mutation p.S50* 0.30 TCGA-VS-A958-01 19 4950984 4950984 C G UHRF1 RNA 0.22 TCGA-VS-A958-01 19 50148619 50148619 C G SCAF1 Missense_Mutation p.I39M 0.20 unknown(0) TCGA-VS-A958-01 19 50154541 50154541 G C SCAF1 Missense_Mutation p.E299Q 0.18 unknown(0) TCGA-VS-A958-01 19 50310065 50310065 G C AP2A1 3'UTR 0.20 TCGA-VS-A958-01 19 50365969 50365969 G A PNKP Silent p.I281I 0.23 TCGA-VS-A958-01 19 50760677 50760677 C G MYH14 Silent p.L722L 0.28 TCGA-VS-A958-01 19 50819062 50819062 C G KCNC3 3'UTR 0.24 TCGA-VS-A958-01 19 50978587 50978587 G C FAM71E1 Silent p.L162L 0.36 TCGA-VS-A958-01 19 51675816 51675816 G A CTD-3187F8.14 Intron 0.14 TCGA-VS-A958-01 19 51875234 51875234 G C NKG7 Missense_Mutation p.F133L 0.07 deleterious(0) probably_damaging(0.973) TCGA-VS-A958-01 19 52196436 52196436 C T SPACA6P-AS RNA 0.18 TCGA-VS-A958-01 19 53302490 53302490 G A ZNF28 3'UTR 0.19 TCGA-VS-A958-01 19 53302541 53302541 G C ZNF28 3'UTR 0.29 TCGA-VS-A958-01 19 53302546 53302546 C T ZNF28 3'UTR 0.28 TCGA-VS-A958-01 19 53571634 53571634 G C ZNF160 Nonsense_Mutation p.S718* 0.07 TCGA-VS-A958-01 19 53848798 53848798 C T ZNF845 Nonsense_Mutation p.Q19* 0.14 TCGA-VS-A958-01 19 54080366 54080366 G A ZNF331 Silent p.E184E 0.18 TCGA-VS-A958-01 19 54135328 54135328 G C DPRX 5'UTR 0.19 TCGA-VS-A958-01 19 54310793 54310793 G C NLRP12 Silent p.L733L 0.24 TCGA-VS-A958-01 19 54310836 54310836 G C NLRP12 Missense_Mutation p.S719C 0.29 tolerated(0.17) possibly_damaging(0.726) TCGA-VS-A958-01 19 54758893 54758893 G C LILRB5 Missense_Mutation p.I320M 0.30 deleterious(0.02) benign(0.177) TCGA-VS-A958-01 19 54781761 54781761 C T LILRB2 Missense_Mutation p.G431S 0.21 tolerated(0.21) benign(0.01) TCGA-VS-A958-01 19 54802518 54802518 G A LILRA3 Missense_Mutation p.S308L 0.10 deleterious(0.02) possibly_damaging(0.597) TCGA-VS-A958-01 19 54973194 54973194 G C LENG8 3'UTR 0.14 TCGA-VS-A958-01 19 55107715 55107715 G C LILRA1 Missense_Mutation p.E340D 0.17 tolerated(0.12) probably_damaging(0.936) TCGA-VS-A958-01 19 55870427 55870427 C T FAM71E2 Silent p.T603T 0.23 TCGA-VS-A958-01 19 5651056 5651056 G A SAFB Silent p.L422L 0.24 TCGA-VS-A958-01 19 5688270 5688270 G A HSD11B1L 3'UTR 0.33 TCGA-VS-A958-01 19 57176137 57176137 C T ZNF835 Missense_Mutation p.G144S 0.38 deleterious(0.04) possibly_damaging(0.695) TCGA-VS-A958-01 19 57642411 57642411 G C USP29 Missense_Mutation p.D790H 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-VS-A958-01 19 57889801 57889801 C T ZNF547 3'UTR 0.33 TCGA-VS-A958-01 19 57901480 57901480 G A AC003002.6 Missense_Mutation p.E5K 0.16 tolerated(0.4) benign(0.002) TCGA-VS-A958-01 19 58214058 58214058 C T ZNF154 Missense_Mutation p.E87K 0.18 tolerated(1) benign(0.001) TCGA-VS-A958-01 19 58214059 58214059 C T ZNF154 Silent p.G86G 0.18 TCGA-VS-A958-01 19 58290206 58290206 G A ZNF586 Missense_Mutation p.G84E 0.28 tolerated(0.21) benign(0.38) TCGA-VS-A958-01 19 58823584 58823584 G A ERVK3-1 RNA 0.15 TCGA-VS-A958-01 19 58851306 58851306 C T ZSCAN22 3'UTR 0.10 TCGA-VS-A958-01 19 58920295 58920295 C G ZNF584 5'UTR 0.25 TCGA-VS-A958-01 19 58967430 58967430 G T ZNF324B Missense_Mutation p.Q373H 0.27 deleterious(0) probably_damaging(0.971) TCGA-VS-A958-01 19 58968055 58968055 G C ZNF324B 3'UTR 0.21 TCGA-VS-A958-01 19 58983329 58983329 C T ZNF324 Silent p.F490F 0.29 TCGA-VS-A958-01 19 59025298 59025298 G C ZBTB45 3'UTR 0.60 TCGA-VS-A958-01 19 59082420 59082420 C T MZF1 Missense_Mutation p.E113K 0.40 tolerated(0.08) benign(0.011) TCGA-VS-A958-01 19 59093591 59093591 G A CENPBD1P1 Intron 0.36 TCGA-VS-A958-01 19 617238 617238 G C POLRMT 3'UTR 0.22 TCGA-VS-A958-01 19 6696387 6696387 C G C3 Intron 0.33 TCGA-VS-A958-01 19 6696404 6696404 C G C3 Missense_Mutation p.R979T 0.27 tolerated(0.43) benign(0.013) TCGA-VS-A958-01 19 7916384 7916384 C T EVI5L Missense_Mutation p.S273L 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-VS-A958-01 19 9057618 9057618 G C MUC16 Missense_Mutation p.S9943C 0.25 unknown(0) TCGA-VS-A958-01 19 9066616 9066616 C T MUC16 Missense_Mutation p.E6944K 0.06 unknown(0) TCGA-VS-A958-01 19 9940660 9940660 G A UBL5 Missense_Mutation p.M66I 0.26 deleterious(0.03) benign(0.003) TCGA-VS-A958-01 1 102270199 102270199 G A OLFM3 Silent p.F324F 0.26 TCGA-VS-A958-01 1 10460621 10460621 G C PGD Missense_Mutation p.E86Q 0.18 tolerated(0.12) benign(0.004) TCGA-VS-A958-01 1 10697719 10697719 C G CASZ1 3'UTR 0.26 TCGA-VS-A958-01 1 10707740 10707740 G C CASZ1 Intron 0.25 TCGA-VS-A958-01 1 110584155 110584155 C T STRIP1 Intron 0.26 TCGA-VS-A958-01 1 112028412 112028412 G C ADORA3 Missense_Mutation p.S308C 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.642) TCGA-VS-A958-01 1 113068685 113068685 C T ST7L Missense_Mutation p.E560K 0.25 deleterious_low_confidence(0.04) benign(0.028) TCGA-VS-A958-01 1 114443928 114443928 G C AP4B1 Missense_Mutation p.L183V 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-VS-A958-01 1 114936963 114936963 G A TRIM33 3'UTR 0.19 TCGA-VS-A958-01 1 11576111 11576111 G A PTCHD2 Missense_Mutation p.E548K 0.31 tolerated(0.91) benign(0.016) TCGA-VS-A958-01 1 11740659 11740659 C G MAD2L2 5'UTR 0.25 TCGA-VS-A958-01 1 117568368 117568368 C G CD101 Missense_Mutation p.S889C 0.25 deleterious(0.01) possibly_damaging(0.563) TCGA-VS-A958-01 1 118462905 118462905 C T GDAP2 Missense_Mutation p.E26K 0.25 tolerated(0.31) benign(0.022) TCGA-VS-A958-01 1 13940181 13940181 G C PDPN Splice_Site p.X187_splice 0.23 TCGA-VS-A958-01 1 145474205 145474205 G A ANKRD34A Missense_Mutation p.E293K 0.23 tolerated(0.85) probably_damaging(0.959) TCGA-VS-A958-01 1 145474214 145474214 G C ANKRD34A Missense_Mutation p.E296Q 0.23 tolerated(0.24) benign(0.289) TCGA-VS-A958-01 1 145561159 145561159 G A ANKRD35 Missense_Mutation p.E283K 0.24 tolerated(0.15) possibly_damaging(0.636) TCGA-VS-A958-01 1 145561183 145561183 G T ANKRD35 Nonsense_Mutation p.E291* 0.22 TCGA-VS-A958-01 1 146696496 146696496 C G FMO5 Missense_Mutation p.W42C 0.28 deleterious(0) probably_damaging(0.998) TCGA-VS-A958-01 1 147097692 147097692 G A BCL9 3'UTR 0.15 TCGA-VS-A958-01 1 148252793 148252793 G C NBPF20 Nonsense_Mutation p.S4520* 0.12 TCGA-VS-A958-01 1 150525052 150525052 C T ADAMTSL4 Silent p.L18L 0.33 TCGA-VS-A958-01 1 150531605 150531605 G C ADAMTSL4 Missense_Mutation p.E909D 0.35 tolerated(0.24) possibly_damaging(0.665) TCGA-VS-A958-01 1 151375367 151375367 C T POGZ 3'UTR 0.19 TCGA-VS-A958-01 1 152004984 152004984 C T S100A11 3'UTR 0.14 TCGA-VS-A958-01 1 152083716 152083716 C T TCHH Silent p.L659L 0.14 TCGA-VS-A958-01 1 152084237 152084237 C T TCHH Missense_Mutation p.E486K 0.17 unknown(0) TCGA-VS-A958-01 1 152128869 152128869 G T RPTN Missense_Mutation p.Q236K 0.15 tolerated(0.14) benign(0.027) TCGA-VS-A958-01 1 152275511 152275511 G C FLG Missense_Mutation p.H3951D 0.13 unknown(0) TCGA-VS-A958-01 1 152277173 152277173 C T FLG Missense_Mutation p.E3397K 0.14 unknown(0) TCGA-VS-A958-01 1 153579937 153579937 G A S100A16 3'UTR 0.14 TCGA-VS-A958-01 1 153932666 153932666 C G SLC39A1 Missense_Mutation p.E295Q 0.17 tolerated(0.06) probably_damaging(0.936) TCGA-VS-A958-01 1 154548389 154548389 C G CHRNB2 Nonsense_Mutation p.S497* 0.48 TCGA-VS-A958-01 1 154987266 154987266 G A ZBTB7B Missense_Mutation p.E78K 0.21 deleterious(0.01) possibly_damaging(0.614) TCGA-VS-A958-01 1 155161985 155161985 C T MUC1 Missense_Mutation p.E50K 0.20 tolerated_low_confidence(0.08) benign(0.156) TCGA-VS-A958-01 1 155206188 155206188 G C GBA Missense_Mutation p.P358A 0.19 deleterious(0.02) benign(0.053) TCGA-VS-A958-01 1 155247439 155247439 G A HCN3 Missense_Mutation p.E20K 0.36 tolerated_low_confidence(0.22) benign(0.001) TCGA-VS-A958-01 1 155733322 155733322 C T GON4L Missense_Mutation p.E1503K 0.13 deleterious(0) possibly_damaging(0.801) TCGA-VS-A958-01 1 155735142 155735142 C G GON4L Missense_Mutation p.Q1374H 0.47 tolerated_low_confidence(0.09) possibly_damaging(0.891) TCGA-VS-A958-01 1 155735583 155735583 C A GON4L Silent p.V1227V 0.30 TCGA-VS-A958-01 1 155764892 155764892 C T GON4L Missense_Mutation p.D566N 0.19 deleterious(0.01) possibly_damaging(0.741) TCGA-VS-A958-01 1 156043345 156043345 C G MEX3A 3'UTR 0.34 TCGA-VS-A958-01 1 156252544 156252544 C T SMG5 5'UTR 0.12 TCGA-VS-A958-01 1 156446905 156446905 G C MEF2D Missense_Mutation p.P252A 0.18 deleterious(0) possibly_damaging(0.725) TCGA-VS-A958-01 1 156568255 156568255 G C GPATCH4 Missense_Mutation p.I42M 0.41 deleterious(0) probably_damaging(0.988) TCGA-VS-A958-01 1 156884646 156884646 G A PEAR1 3'UTR 0.06 TCGA-VS-A958-01 1 158064133 158064133 G A KIRREL Missense_Mutation p.D584N 0.18 tolerated(0.13) benign(0.424) TCGA-VS-A958-01 1 158153980 158153980 C T CD1D 3'UTR 0.16 TCGA-VS-A958-01 1 158641136 158641136 G A SPTA1 Silent p.I532I 0.21 TCGA-VS-A958-01 1 159036081 159036081 G C AIM2 Missense_Mutation p.I145M 0.11 tolerated(0.13) benign(0.016) TCGA-VS-A958-01 1 159898680 159898680 G C IGSF9 Missense_Mutation p.P833R 0.39 tolerated(0.34) benign(0.003) TCGA-VS-A958-01 1 160184865 160184865 G A PEA15 3'UTR 0.09 TCGA-VS-A958-01 1 160209661 160209661 G C DCAF8 Missense_Mutation p.F183L 0.15 tolerated(0.66) benign(0.007) TCGA-VS-A958-01 1 160518060 160518060 C T CD84 Missense_Mutation p.E342K 0.22 deleterious(0.03) possibly_damaging(0.678) TCGA-VS-A958-01 1 160604405 160604405 G A SLAMF1 Missense_Mutation p.S233L 0.18 tolerated(0.65) benign(0.015) TCGA-VS-A958-01 1 160917811 160917811 C T ITLN2 Missense_Mutation p.A245T 0.31 tolerated(0.25) benign(0.117) TCGA-VS-A958-01 1 161600165 161600165 C A FCGR3B Missense_Mutation p.M54I 0.30 tolerated(0.2) benign(0.004) TCGA-VS-A958-01 1 16174380 16174380 C T SPEN 5'UTR 0.55 TCGA-VS-A958-01 1 166822308 166822308 G C POGK 3'UTR 0.27 TCGA-VS-A958-01 1 16767203 16767203 C T NECAP2 5'Flank 0.33 TCGA-VS-A958-01 1 1684276 1684276 G C NADK 3'UTR 0.15 TCGA-VS-A958-01 1 171546649 171546649 G A PRRC2C Silent p.V2342V 0.19 TCGA-VS-A958-01 1 182775596 182775596 C T NPL Intron 0.32 TCGA-VS-A958-01 1 183220877 183220877 G T NMNAT2 3'UTR 0.16 TCGA-VS-A958-01 1 185269409 185269409 C T IVNS1ABP Missense_Mutation p.D437N 0.20 tolerated(0.32) benign(0.107) TCGA-VS-A958-01 1 185270219 185270219 C G IVNS1ABP Missense_Mutation p.K335N 0.19 tolerated(0.06) benign(0.052) TCGA-VS-A958-01 1 185270252 185270252 C G IVNS1ABP Missense_Mutation p.Q324H 0.16 tolerated(0.23) benign(0.002) TCGA-VS-A958-01 1 185970782 185970782 C G HMCN1 Missense_Mutation p.F1419L 0.07 probably_damaging(0.93) TCGA-VS-A958-01 1 186646901 186646901 G A PTGS2 Silent p.F173F 0.24 TCGA-VS-A958-01 1 192321212 192321212 G A RGS21 Missense_Mutation p.E42K 0.22 deleterious(0) probably_damaging(0.996) TCGA-VS-A958-01 1 192780185 192780185 G A RGS2 Missense_Mutation p.E117K 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-VS-A958-01 1 19492237 19492237 G C UBR4 Missense_Mutation p.S1375C 0.23 benign(0.021) TCGA-VS-A958-01 1 1956428 1956428 C G GABRD Missense_Mutation p.S39C 0.20 deleterious(0) probably_damaging(0.997) TCGA-VS-A958-01 1 200587762 200587762 G T KIF14 Silent p.L30L 0.26 TCGA-VS-A958-01 1 201294070 201294070 G A PKP1 Silent p.G633G 0.27 TCGA-VS-A958-01 1 202860548 202860548 G A KLHL12 3'UTR 0.20 TCGA-VS-A958-01 1 202862549 202862549 T A KLHL12 Silent p.A466A 0.12 TCGA-VS-A958-01 1 203819056 203819056 C G ZC3H11A Missense_Mutation p.T614R 0.05 tolerated(0.05) benign(0.444) TCGA-VS-A958-01 1 214811289 214811289 C G CENPF Silent p.L509L 0.24 TCGA-VS-A958-01 1 216017670 216017670 C G USH2A Missense_Mutation p.R3075T 0.26 benign(0.007) TCGA-VS-A958-01 1 216061826 216061826 G A USH2A Missense_Mutation p.S2722L 0.18 possibly_damaging(0.792) TCGA-VS-A958-01 1 222705320 222705320 C T HHIPL2 Missense_Mutation p.E571K 0.22 deleterious(0.03) possibly_damaging(0.811) TCGA-VS-A958-01 1 222705357 222705357 C G HHIPL2 Silent p.L558L 0.26 TCGA-VS-A958-01 1 224197310 224197310 C G RP11-504P24.4 RNA 0.43 TCGA-VS-A958-01 1 227842532 227842532 C T ZNF678 Missense_Mutation p.S194L 0.22 deleterious(0.02) benign(0.412) TCGA-VS-A958-01 1 230838946 230838946 G A AGT Nonsense_Mutation p.Q467* 0.14 TCGA-VS-A958-01 1 235827875 235827875 G A LYST Silent p.L3695L 0.18 TCGA-VS-A958-01 1 23782442 23782442 C T ASAP3 Missense_Mutation p.E94K 0.21 deleterious(0.04) benign(0.157) TCGA-VS-A958-01 1 240656629 240656629 G A GREM2 Silent p.I49I 0.27 TCGA-VS-A958-01 1 244716079 244716079 C T C1orf101 Missense_Mutation p.S331L 0.16 tolerated(0.09) benign(0.067) TCGA-VS-A958-01 1 24795571 24795571 G A NIPAL3 Missense_Mutation p.E373K 0.28 tolerated(0.6) probably_damaging(0.989) TCGA-VS-A958-01 1 248457925 248457925 G A OR2T12 Missense_Mutation p.S319L 0.20 deleterious_low_confidence(0.03) benign(0.017) TCGA-VS-A958-01 1 248487113 248487113 C T OR2M7 Missense_Mutation p.G253E 0.26 deleterious(0) probably_damaging(0.997) TCGA-VS-A958-01 1 25894702 25894702 C G LDLRAP1 3'UTR 0.19 TCGA-VS-A958-01 1 26883537 26883537 C T RPS6KA1 Nonsense_Mutation p.Q353* 0.26 TCGA-VS-A958-01 1 27117375 27117375 G A PIGV Silent p.L23L 0.31 TCGA-VS-A958-01 1 27217198 27217198 G A GPATCH3 3'UTR 0.35 TCGA-VS-A958-01 1 27217255 27217255 G C GPATCH3 3'UTR 0.30 TCGA-VS-A958-01 1 27705799 27705799 C T CD164L2 3'UTR 0.31 TCGA-VS-A958-01 1 27744922 27744922 C T WASF2 Silent p.V89V 0.29 TCGA-VS-A958-01 1 28271830 28271830 C T SMPDL3B Missense_Mutation p.S50F 0.17 deleterious(0.04) benign(0.053) TCGA-VS-A958-01 1 29040885 29040885 C T GMEB1 Missense_Mutation p.S441F 0.14 deleterious(0) possibly_damaging(0.692) TCGA-VS-A958-01 1 29068970 29068970 C G YTHDF2 Missense_Mutation p.S63C 0.21 deleterious(0) probably_damaging(0.997) TCGA-VS-A958-01 1 29475274 29475274 C T SRSF4 Missense_Mutation p.R378K 0.27 tolerated_low_confidence(0.81) unknown(0) TCGA-VS-A958-01 1 29508155 29508155 C T SRSF4 Intron 0.27 TCGA-VS-A958-01 1 32051462 32051462 C A TINAGL1 Nonsense_Mutation p.S401* 0.33 TCGA-VS-A958-01 1 32557547 32557547 G C TMEM39B Missense_Mutation p.E288Q 0.24 tolerated(0.31) possibly_damaging(0.797) TCGA-VS-A958-01 1 32658263 32658263 G A TXLNA Silent p.L363L 0.16 TCGA-VS-A958-01 1 32713068 32713068 G A FAM167B Missense_Mutation p.E16K 0.20 tolerated(0.07) probably_damaging(0.981) TCGA-VS-A958-01 1 32741261 32741261 G A LCK Missense_Mutation p.E157K 0.36 deleterious(0.01) possibly_damaging(0.8) TCGA-VS-A958-01 1 33059276 33059276 G A ZBTB8A Silent p.Q248Q 0.26 TCGA-VS-A958-01 1 33292347 33292347 A G S100PBP Missense_Mutation p.N216S 0.18 tolerated(0.21) possibly_damaging(0.641) TCGA-VS-A958-01 1 3548900 3548900 C T WRAP73 Missense_Mutation p.E309K 0.21 tolerated(0.31) benign(0.017) TCGA-VS-A958-01 1 36213658 36213658 G A CLSPN Missense_Mutation p.S826L 0.29 deleterious(0) possibly_damaging(0.786) TCGA-VS-A958-01 1 38027819 38027819 C T DNALI1 Silent p.F260F 0.30 TCGA-VS-A958-01 1 38227350 38227350 G T EPHA10 Missense_Mutation p.Q193K 0.25 deleterious(0) probably_damaging(0.979) TCGA-VS-A958-01 1 38484249 38484249 G C UTP11L Missense_Mutation p.K114N 0.18 tolerated(0.14) possibly_damaging(0.479) TCGA-VS-A958-01 1 39325194 39325194 C G RRAGC Missense_Mutation p.G42A 0.36 tolerated(0.86) probably_damaging(0.952) TCGA-VS-A958-01 1 40723841 40723841 C G ZMPSTE24 5'UTR 0.24 TCGA-VS-A958-01 1 43898185 43898185 C G SZT2 Intron 0.25 TCGA-VS-A958-01 1 45793142 45793142 C G HPDL Missense_Mutation p.R108G 0.26 tolerated(0.28) benign(0.017) TCGA-VS-A958-01 1 47075836 47075836 C A MOB3C Missense_Mutation p.K205N 0.20 tolerated(0.22) benign(0.32) TCGA-VS-A958-01 1 47904465 47904465 C G FOXD2 Missense_Mutation p.R220G 0.22 deleterious(0) probably_damaging(0.963) TCGA-VS-A958-01 1 52442660 52442660 C T RAB3B Missense_Mutation p.D44N 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-VS-A958-01 1 53153635 53153635 G A COA7 Silent p.F151F 0.20 TCGA-VS-A958-01 1 53736896 53736896 C G LRP8 Intron 0.22 TCGA-VS-A958-01 1 53736950 53736950 C T LRP8 Missense_Mutation p.E359K 0.28 tolerated(0.06) possibly_damaging(0.884) TCGA-VS-A958-01 1 54412137 54412137 G A LRRC42 5'UTR 0.16 TCGA-VS-A958-01 1 56961704 56961704 G A PPAP2B 3'UTR 0.31 TCGA-VS-A958-01 1 60228351 60228351 C G FGGY 3'UTR 0.17 TCGA-VS-A958-01 1 6160199 6160199 G C KCNAB2 3'UTR 0.33 TCGA-VS-A958-01 1 6189124 6189124 G A CHD5 Silent p.F1131F 0.09 TCGA-VS-A958-01 1 62914170 62914170 G C USP1 Silent p.L485L 0.28 TCGA-VS-A958-01 1 7829169 7829169 G C CAMTA1 3'UTR 0.24 TCGA-VS-A958-01 1 7913525 7913525 C T UTS2 5'Flank 0.19 TCGA-VS-A958-01 1 8073521 8073521 G A ERRFI1 Silent p.L380L 0.32 TCGA-VS-A958-01 1 84964102 84964102 G C GNG5 3'UTR 0.32 TCGA-VS-A958-01 1 87549944 87549944 C T HS2ST1 Missense_Mutation p.S144F 0.24 deleterious(0) possibly_damaging(0.798) TCGA-VS-A958-01 1 8921489 8921489 C T ENO1 Splice_Site p.X412_splice 0.24 TCGA-VS-A958-01 1 89726431 89726431 C T GBP5 Missense_Mutation p.A573T 0.25 deleterious(0.02) benign(0.129) TCGA-VS-A958-01 1 90178632 90178632 C G LRRC8C Missense_Mutation p.S168C 0.18 deleterious(0) probably_damaging(0.996) TCGA-VS-A958-01 1 94463516 94463516 G C ABCA4 Silent p.V2210V 0.21 TCGA-VS-A958-01 1 94639793 94639793 C T ARHGAP29 Missense_Mutation p.E1140K 0.26 deleterious(0.05) benign(0.293) TCGA-VS-A958-01 1 99358492 99358492 G A LPPR5 3'UTR 0.19 TCGA-VS-A958-01 20 13982962 13982962 G C MACROD2 Missense_Mutation p.E25D 0.14 tolerated(0.22) benign(0.183) TCGA-VS-A958-01 20 17970929 17970929 C G MGME1 3'UTR 0.47 TCGA-VS-A958-01 20 19679246 19679246 G A SLC24A3 Silent p.G547G 0.26 TCGA-VS-A958-01 20 23425521 23425521 C G CSTL1 3'UTR 0.19 TCGA-VS-A958-01 20 30432985 30432985 C G FOXS1 Missense_Mutation p.E121Q 0.16 tolerated(0.17) possibly_damaging(0.478) TCGA-VS-A958-01 20 30436706 30436706 C T FOXS1 5'Flank 0.33 TCGA-VS-A958-01 20 30667611 30667611 G C HCK Missense_Mutation p.E155Q 0.18 deleterious(0.03) possibly_damaging(0.714) TCGA-VS-A958-01 20 31997977 31997977 G C SNTA1 Missense_Mutation p.H401D 0.26 deleterious(0) probably_damaging(0.94) TCGA-VS-A958-01 20 3218672 3218672 C G SLC4A11 Missense_Mutation p.E13D 0.21 deleterious_low_confidence(0.04) benign(0.023) TCGA-VS-A958-01 20 33533763 33533763 G C GSS Missense_Mutation p.L90V 0.21 deleterious(0) probably_damaging(0.979) TCGA-VS-A958-01 20 34560680 34560680 T C CNBD2 Missense_Mutation p.F61L 0.17 tolerated(0.12) benign(0.21) TCGA-VS-A958-01 20 35177542 35177542 G A MYL9 Missense_Mutation p.E137K 0.29 deleterious(0) probably_damaging(0.947) TCGA-VS-A958-01 20 35668643 35668643 G A RBL1 Nonsense_Mutation p.Q606* 0.29 TCGA-VS-A958-01 20 36937407 36937407 C T BPI Silent p.I111I 0.21 TCGA-VS-A958-01 20 37356535 37356535 C T SLC32A1 Silent p.I277I 0.17 TCGA-VS-A958-01 20 37356754 37356754 C T SLC32A1 Silent p.L350L 0.24 TCGA-VS-A958-01 20 37357129 37357129 C G SLC32A1 Silent p.L475L 0.14 TCGA-VS-A958-01 20 37357881 37357881 C T SLC32A1 3'UTR 0.25 TCGA-VS-A958-01 20 377883 377883 C G TRIB3 3'UTR 0.39 TCGA-VS-A958-01 20 377898 377898 C G TRIB3 3'UTR 0.36 TCGA-VS-A958-01 20 39317262 39317262 C T MAFB Missense_Mutation p.E77K 0.24 deleterious(0.03) possibly_damaging(0.537) TCGA-VS-A958-01 20 43580522 43580522 C T TOMM34 Missense_Mutation p.E168K 0.34 tolerated(0.33) benign(0.004) TCGA-VS-A958-01 20 44692021 44692021 C G NCOA5 Missense_Mutation p.R376S 0.29 tolerated(0.12) probably_damaging(0.963) TCGA-VS-A958-01 20 48520439 48520439 G T SPATA2 3'UTR 0.36 TCGA-VS-A958-01 20 49209618 49209618 C G FAM65C Missense_Mutation p.Q772H 0.24 tolerated(0.38) benign(0.003) TCGA-VS-A958-01 20 54824585 54824585 G A MC3R Missense_Mutation p.G229E 0.47 tolerated(0.14) possibly_damaging(0.772) TCGA-VS-A958-01 20 60886094 60886094 G A LAMA5 Missense_Mutation p.T3382I 0.15 benign(0.034) TCGA-VS-A958-01 20 60886105 60886105 G A LAMA5 Silent p.L3378L 0.15 TCGA-VS-A958-01 20 60902957 60902957 C G LAMA5 Missense_Mutation p.V1588L 0.12 benign(0.054) TCGA-VS-A958-01 20 9510553 9510553 G C LAMP5 3'UTR 0.14 TCGA-VS-A958-01 21 10951333 10951333 G C TPTE Missense_Mutation p.R127G 0.10 tolerated(0.1) benign(0.044) TCGA-VS-A958-01 21 10951388 10951388 G A TPTE Silent p.L108L 0.11 TCGA-VS-A958-01 21 30304859 30304859 C T LTN1 Missense_Mutation p.R1714K 0.28 tolerated(0.12) possibly_damaging(0.541) TCGA-VS-A958-01 21 30313688 30313688 C G LTN1 Missense_Mutation p.E1492Q 0.30 tolerated(0.12) possibly_damaging(0.711) TCGA-VS-A958-01 21 36421314 36421314 C T RUNX1 5'UTR 0.30 TCGA-VS-A958-01 21 37650504 37650504 C G DOPEY2 Intron 0.28 TCGA-VS-A958-01 21 39754544 39754544 G C ERG 3'UTR 0.19 TCGA-VS-A958-01 21 40587221 40587221 C G BRWD1 Missense_Mutation p.E1243Q 0.25 tolerated(0.37) possibly_damaging(0.459) TCGA-VS-A958-01 21 41710234 41710234 C T DSCAM Missense_Mutation p.R526H 0.23 tolerated(0.08) possibly_damaging(0.458) TCGA-VS-A958-01 21 45507609 45507609 C G TRAPPC10 Missense_Mutation p.Q857E 0.19 tolerated(0.18) benign(0.016) TCGA-VS-A958-01 21 45999572 45999572 G C KRTAP10-5 3'UTR 0.30 TCGA-VS-A958-01 22 19838633 19838633 C G C22orf29 3'UTR 0.28 TCGA-VS-A958-01 22 21107268 21107268 G A PI4KA Silent p.F970F 0.31 TCGA-VS-A958-01 22 21369556 21369556 G C P2RX6 Silent p.V31V 0.24 TCGA-VS-A958-01 22 24227082 24227082 C G SLC2A11 3'UTR 0.29 TCGA-VS-A958-01 22 31658760 31658760 G A LIMK2 Silent p.L258L 0.12 TCGA-VS-A958-01 22 35719087 35719087 G A TOM1 Missense_Mutation p.V95M 0.35 deleterious(0.03) probably_damaging(1) TCGA-VS-A958-01 22 37322093 37322093 C T CSF2RB Missense_Mutation p.P89S 0.30 tolerated(0.44) benign(0.002) TCGA-VS-A958-01 22 37332590 37332590 G C CSF2RB Splice_Site p.X489_splice 0.25 TCGA-VS-A958-01 22 37425517 37425517 G A MPST Missense_Mutation p.E306K 0.37 deleterious(0.03) benign(0.063) TCGA-VS-A958-01 22 38204129 38204129 C T GCAT Missense_Mutation p.S52F 0.26 deleterious(0) probably_damaging(0.982) TCGA-VS-A958-01 22 38822646 38822646 G C KCNJ4 3'UTR 0.23 TCGA-VS-A958-01 22 39780878 39780878 G C SYNGR1 3'UTR 0.29 TCGA-VS-A958-01 22 41525934 41525934 G A EP300 Nonsense_Mutation p.W403* 0.21 TCGA-VS-A958-01 22 42263214 42263214 C T SREBF2 Silent p.F156F 0.23 TCGA-VS-A958-01 22 42910786 42910786 C T RRP7A Splice_Site p.X154_splice 0.19 TCGA-VS-A958-01 22 42981431 42981431 C T POLDIP3 3'UTR 0.42 TCGA-VS-A958-01 22 44893186 44893186 G A LDOC1L Missense_Mutation p.S84F 0.18 deleterious(0.01) probably_damaging(0.919) TCGA-VS-A958-01 22 45132759 45132759 G A PRR5 Missense_Mutation p.E290K 0.22 deleterious(0) probably_damaging(0.986) TCGA-VS-A958-01 22 45132771 45132771 G T PRR5 Missense_Mutation p.A294S 0.24 tolerated(0.43) benign(0.006) TCGA-VS-A958-01 22 46509730 46509730 C T FLJ27365 3'UTR 0.23 TCGA-VS-A958-01 22 46654448 46654448 G A PKDREJ Missense_Mutation p.S1591F 0.30 deleterious(0) probably_damaging(0.99) TCGA-VS-A958-01 22 49146718 49146718 G A FAM19A5 3'Flank 0.16 TCGA-VS-A958-01 22 51015051 51015051 G C CPT1B Missense_Mutation p.L159V 0.21 deleterious(0.01) benign(0.086) TCGA-VS-A958-01 2 10262911 10262911 C T RRM2 Missense_Mutation p.R56C 0.32 tolerated_low_confidence(0.12) benign(0) TCGA-VS-A958-01 2 108999634 108999634 G A SULT1C4 Missense_Mutation p.G160E 0.25 deleterious(0.02) possibly_damaging(0.814) TCGA-VS-A958-01 2 109293059 109293059 C T LIMS1 Intron 0.15 TCGA-VS-A958-01 2 11284370 11284370 C G C2orf50 3'UTR 0.42 TCGA-VS-A958-01 2 113333129 113333129 C T POLR1B Silent p.L1077L 0.26 TCGA-VS-A958-01 2 113737658 113737658 G A IL36G Missense_Mutation p.G78E 0.20 deleterious(0.01) probably_damaging(0.912) TCGA-VS-A958-01 2 113940771 113940771 C T PSD4 Silent p.F246F 0.21 TCGA-VS-A958-01 2 113943515 113943515 G C PSD4 Missense_Mutation p.W437C 0.21 tolerated_low_confidence(0.28) benign(0.004) TCGA-VS-A958-01 2 116510762 116510762 C T DPP10 Silent p.I325I 0.06 TCGA-VS-A958-01 2 120125773 120125773 G C DBI Missense_Mutation p.E68Q 0.25 deleterious(0.04) benign(0.241) TCGA-VS-A958-01 2 128046325 128046325 G A ERCC3 Missense_Mutation p.T313I 0.21 tolerated(0.2) benign(0.098) TCGA-VS-A958-01 2 128459083 128459083 C G WDR33 3'UTR 0.12 TCGA-VS-A958-01 2 128459866 128459866 C T WDR33 3'UTR 0.19 TCGA-VS-A958-01 2 128461293 128461293 C T WDR33 3'UTR 0.19 TCGA-VS-A958-01 2 128471421 128471421 C T WDR33 Missense_Mutation p.R1015K 0.26 tolerated_low_confidence(1) benign(0.341) TCGA-VS-A958-01 2 128471482 128471482 C A WDR33 Missense_Mutation p.D995Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.806) TCGA-VS-A958-01 2 131176795 131176795 C T FAR2P2 RNA 0.22 TCGA-VS-A958-01 2 131785526 131785526 G C ARHGEF4 Missense_Mutation p.D146H 0.13 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 2 133483319 133483319 C T NCKAP5 Missense_Mutation p.R1865K 0.23 tolerated(0.06) benign(0.016) TCGA-VS-A958-01 2 135676424 135676424 C G CCNT2 5'UTR 0.18 TCGA-VS-A958-01 2 136633957 136633957 C T MCM6 5'UTR 0.25 TCGA-VS-A958-01 2 152425865 152425865 C T NEB Missense_Mutation p.E5818K 0.25 probably_damaging(0.994) TCGA-VS-A958-01 2 152737379 152737379 C T CACNB4 Missense_Mutation p.E109K 0.24 deleterious(0.03) probably_damaging(0.991) TCGA-VS-A958-01 2 153192097 153192097 C G FMNL2 5'UTR 0.25 TCGA-VS-A958-01 2 157439708 157439708 G A GPD2 3'UTR 0.23 TCGA-VS-A958-01 2 158181275 158181275 C T ERMN Splice_Site p.X94_splice 0.26 TCGA-VS-A958-01 2 16085784 16085784 C G MYCN Silent p.L320L 0.26 TCGA-VS-A958-01 2 161056534 161056534 C T ITGB6 Missense_Mutation p.G14E 0.28 tolerated(0.34) benign(0.016) TCGA-VS-A958-01 2 162272950 162272950 C T TBR1 Missense_Mutation p.S10F 0.35 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-VS-A958-01 2 162930492 162930492 C G DPP4 5'UTR 0.22 TCGA-VS-A958-01 2 168811454 168811454 G A STK39 3'UTR 0.25 TCGA-VS-A958-01 2 168812012 168812012 G A STK39 Silent p.V544V 0.26 TCGA-VS-A958-01 2 169711865 169711865 G A NOSTRIN Missense_Mutation p.E344K 0.19 deleterious(0) probably_damaging(0.971) TCGA-VS-A958-01 2 170460700 170460700 G T PPIG Missense_Mutation p.G22V 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 2 172305228 172305228 C G DCAF17 Nonsense_Mutation p.S120* 0.30 TCGA-VS-A958-01 2 173882190 173882190 G C RAPGEF4 Missense_Mutation p.E656Q 0.21 tolerated(0.12) benign(0.312) TCGA-VS-A958-01 2 174104153 174104153 G A MLTK Missense_Mutation p.E430K 0.12 tolerated(0.57) possibly_damaging(0.524) TCGA-VS-A958-01 2 178087463 178087463 G A HNRNPA3 3'Flank 0.33 TCGA-VS-A958-01 2 178417083 178417083 C G TTC30B Missense_Mutation p.E137Q 0.21 tolerated(0.09) benign(0.196) TCGA-VS-A958-01 2 179432426 179432426 C T TTN Missense_Mutation p.E26145K 0.19 TCGA-VS-A958-01 2 179477991 179477991 G A TTN Silent p.L16515L 0.21 TCGA-VS-A958-01 2 183640042 183640042 G C DNAJC10 Splice_Site p.X756_splice 0.25 TCGA-VS-A958-01 2 190426768 190426768 C T SLC40A1 Missense_Mutation p.E518K 0.36 deleterious(0.01) probably_damaging(0.933) TCGA-VS-A958-01 2 191236197 191236197 G C INPP1 3'UTR 0.25 TCGA-VS-A958-01 2 196601522 196601522 C G SLC39A10 3'UTR 0.25 TCGA-VS-A958-01 2 201438309 201438309 G C SGOL2 Missense_Mutation p.K1080N 0.21 deleterious(0.05) possibly_damaging(0.662) TCGA-VS-A958-01 2 201501647 201501647 C T AOX1 Missense_Mutation p.S787L 0.37 tolerated(0.17) benign(0.2) TCGA-VS-A958-01 2 201645532 201645532 G C AC007163.6 Intron 0.26 TCGA-VS-A958-01 2 202149901 202149901 C T CASP8 Nonsense_Mutation p.Q448* 0.33 TCGA-VS-A958-01 2 202272270 202272270 C G TRAK2 Missense_Mutation p.E48Q 0.25 deleterious(0.05) probably_damaging(0.949) TCGA-VS-A958-01 2 202978070 202978070 G A AC079354.1 Missense_Mutation p.D590N 0.16 tolerated(0.31) benign(0.005) TCGA-VS-A958-01 2 204292132 204292132 G A ABI2 3'UTR 0.16 TCGA-VS-A958-01 2 207041386 207041386 G C GPR1 Missense_Mutation p.P196A 0.19 tolerated(0.78) benign(0.08) TCGA-VS-A958-01 2 207041720 207041720 G A GPR1 Silent p.F84F 0.24 TCGA-VS-A958-01 2 207989095 207989095 C T KLF7 Missense_Mutation p.E46K 0.31 deleterious(0) probably_damaging(0.987) TCGA-VS-A958-01 2 208618877 208618877 C G CCNYL1 3'UTR 0.29 TCGA-VS-A958-01 2 219000283 219000283 C T CXCR2 Silent p.I253I 0.28 TCGA-VS-A958-01 2 220162132 220162132 G T PTPRN Silent p.A637A 0.22 TCGA-VS-A958-01 2 220249136 220249136 G C DNPEP Missense_Mutation p.I268M 0.26 deleterious(0) probably_damaging(0.998) TCGA-VS-A958-01 2 231405673 231405673 G A SP100 Missense_Mutation p.E765K 0.21 deleterious(0) possibly_damaging(0.486) TCGA-VS-A958-01 2 232577224 232577224 G A PTMA Missense_Mutation p.E96K 0.13 deleterious(0.04) unknown(0) TCGA-VS-A958-01 2 232577520 232577520 G A PTMA Missense_Mutation p.D99N 0.13 tolerated(0.07) unknown(0) TCGA-VS-A958-01 2 232577573 232577573 G C PTMA 3'UTR 0.15 TCGA-VS-A958-01 2 232577758 232577758 G A PTMA 3'UTR 0.16 TCGA-VS-A958-01 2 232577767 232577767 A C PTMA 3'UTR 0.14 TCGA-VS-A958-01 2 233127949 233127949 C T DIS3L2 Silent p.I486I 0.16 TCGA-VS-A958-01 2 233839474 233839474 G A NGEF Nonsense_Mutation p.Q43* 0.18 TCGA-VS-A958-01 2 234115905 234115905 G C INPP5D 3'UTR 0.25 TCGA-VS-A958-01 2 234754436 234754436 C G HJURP Missense_Mutation p.E145Q 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-VS-A958-01 2 237490062 237490062 C G ACKR3 Missense_Mutation p.I318M 0.28 deleterious(0.02) possibly_damaging(0.522) TCGA-VS-A958-01 2 238263564 238263564 C T COL6A3 Missense_Mutation p.R2202Q 0.26 benign(0.002) TCGA-VS-A958-01 2 238449033 238449033 G A MLPH Missense_Mutation p.E383K 0.20 tolerated(0.11) possibly_damaging(0.77) TCGA-VS-A958-01 2 24110841 24110841 G A ATAD2B Missense_Mutation p.P145S 0.23 tolerated_low_confidence(0.33) benign(0.003) TCGA-VS-A958-01 2 242274552 242274552 C G SEPT2 Missense_Mutation p.L48V 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A958-01 2 27435077 27435077 G T ATRAID Missense_Mutation p.K2N 0.11 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-VS-A958-01 2 27448053 27448053 G C CAD Missense_Mutation p.R521T 0.15 tolerated(0.06) benign(0.04) TCGA-VS-A958-01 2 31178555 31178555 G C GALNT14 Missense_Mutation p.L200V 0.24 deleterious(0) probably_damaging(0.946) TCGA-VS-A958-01 2 31490482 31490482 G A EHD3 3'UTR 0.34 TCGA-VS-A958-01 2 31600030 31600030 C T XDH Missense_Mutation p.R439K 0.18 tolerated(0.11) possibly_damaging(0.803) TCGA-VS-A958-01 2 32640482 32640482 C G BIRC6 Missense_Mutation p.S708C 0.27 possibly_damaging(0.707) TCGA-VS-A958-01 2 32768330 32768330 C T BIRC6 Missense_Mutation p.S4105F 0.22 possibly_damaging(0.663) TCGA-VS-A958-01 2 33809260 33809260 C T FAM98A 3'UTR 0.20 TCGA-VS-A958-01 2 39200899 39200899 C G ARHGEF33 Nonsense_Mutation p.S843* 0.30 TCGA-VS-A958-01 2 39944818 39944818 C T TMEM178A 3'UTR 0.25 TCGA-VS-A958-01 2 40655794 40655794 C G SLC8A1 Missense_Mutation p.E543Q 0.14 tolerated(0.14) probably_damaging(0.969) TCGA-VS-A958-01 2 42931388 42931388 G C MTA3 Silent p.V360V 0.26 TCGA-VS-A958-01 2 43514050 43514050 G C THADA Missense_Mutation p.L1721V 0.31 deleterious(0) benign(0.23) TCGA-VS-A958-01 2 44508629 44508629 C G SLC3A1 Missense_Mutation p.I238M 0.18 tolerated(0.06) possibly_damaging(0.79) TCGA-VS-A958-01 2 46413516 46413516 G A PRKCE 3'UTR 0.17 TCGA-VS-A958-01 2 58387289 58387289 C G FANCL Missense_Mutation p.R354T 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-VS-A958-01 2 58387309 58387309 C T FANCL Silent p.L347L 0.20 TCGA-VS-A958-01 2 63834017 63834017 G A MDH1 Missense_Mutation p.E319K 0.21 tolerated(0.15) benign(0.016) TCGA-VS-A958-01 2 64147059 64147059 G A VPS54 Silent p.L708L 0.19 TCGA-VS-A958-01 2 64862895 64862895 G A SERTAD2 3'UTR 0.20 TCGA-VS-A958-01 2 69623395 69623395 C G NFU1 Missense_Mutation p.E250Q 0.22 tolerated(0.14) benign(0.03) TCGA-VS-A958-01 2 6989053 6989053 T A CMPK2 3'UTR 0.17 TCGA-VS-A958-01 2 70066612 70066612 C T GMCL1 Silent p.F136F 0.26 TCGA-VS-A958-01 2 71801373 71801373 C G DYSF Missense_Mutation p.L1092V 0.20 tolerated(0.06) possibly_damaging(0.55) TCGA-VS-A958-01 2 71871101 71871101 G A DYSF Missense_Mutation p.E1512K 0.17 deleterious(0) possibly_damaging(0.666) TCGA-VS-A958-01 2 73447828 73447828 G A SMYD5 Missense_Mutation p.E129K 0.16 tolerated(0.62) benign(0.014) TCGA-VS-A958-01 2 73453062 73453062 G A SMYD5 Missense_Mutation p.M415I 0.27 deleterious_low_confidence(0) unknown(0) TCGA-VS-A958-01 2 73453795 73453795 C T SMYD5 3'UTR 0.19 TCGA-VS-A958-01 2 73454244 73454244 G A SMYD5 3'UTR 0.31 TCGA-VS-A958-01 2 74335094 74335094 C G TET3 3'UTR 0.28 TCGA-VS-A958-01 2 74691734 74691734 G C MOGS Missense_Mutation p.F156L 0.20 deleterious(0) probably_damaging(0.992) TCGA-VS-A958-01 2 75933778 75933778 C T GCFC2 Splice_Site p.X89_splice 0.18 TCGA-VS-A958-01 2 79253893 79253893 C T REG3G Missense_Mutation p.S44F 0.21 deleterious(0.02) benign(0.389) TCGA-VS-A958-01 2 84937482 84937482 C T DNAH6 Silent p.F3108F 0.27 TCGA-VS-A958-01 2 86258708 86258708 G A POLR1A Silent p.D1441D 0.32 TCGA-VS-A958-01 2 86276113 86276113 C G POLR1A Missense_Mutation p.R843P 0.15 tolerated(0.15) possibly_damaging(0.743) TCGA-VS-A958-01 2 86385758 86385758 C T IMMT Silent p.L373L 0.25 TCGA-VS-A958-01 2 86444215 86444215 G C REEP1 3'UTR 0.23 TCGA-VS-A958-01 2 96459820 96459820 C T AC008268.2 RNA 0.17 TCGA-VS-A958-01 2 99797469 99797469 C T MITD1 5'UTR 0.42 TCGA-VS-A958-01 3 100105795 100105795 T A TOMM70A Nonsense_Mutation p.K118* 0.15 TCGA-VS-A958-01 3 100119479 100119479 G A TOMM70A Silent p.H105H 0.06 TCGA-VS-A958-01 3 101023077 101023077 C T IMPG2 Missense_Mutation p.M138I 0.24 tolerated(0.06) benign(0.091) TCGA-VS-A958-01 3 10123074 10123074 G A FANCD2 Silent p.V1050V 0.22 TCGA-VS-A958-01 3 105377341 105377341 G A CBLB 3'UTR 0.36 TCGA-VS-A958-01 3 107642547 107642547 G C LINC00636 RNA 0.20 TCGA-VS-A958-01 3 108220651 108220651 C T MYH15 Missense_Mutation p.E103K 0.28 deleterious(0) benign(0.343) TCGA-VS-A958-01 3 108698453 108698453 C G MORC1 Missense_Mutation p.V796L 0.20 deleterious(0.01) benign(0.041) TCGA-VS-A958-01 3 112063948 112063948 C G CD200 Missense_Mutation p.F103L 0.20 deleterious(0) benign(0.205) TCGA-VS-A958-01 3 112969463 112969463 G C BOC Silent p.V53V 0.27 TCGA-VS-A958-01 3 123051447 123051447 G C ADCY5 Silent p.L494L 0.28 TCGA-VS-A958-01 3 123675404 123675404 C G CCDC14 Intron 0.24 TCGA-VS-A958-01 3 124153274 124153274 G T KALRN Nonsense_Mutation p.E982* 0.31 TCGA-VS-A958-01 3 124738427 124738427 G A HEG1 Nonsense_Mutation p.Q423* 0.32 TCGA-VS-A958-01 3 126390780 126390780 G C NUP210P1 RNA 0.16 TCGA-VS-A958-01 3 129234437 129234437 C G IFT122 Missense_Mutation p.S1138C 0.23 deleterious(0) possibly_damaging(0.878) TCGA-VS-A958-01 3 129236359 129236359 G A IFT122 Missense_Mutation p.E1156K 0.32 tolerated(0.14) benign(0.379) TCGA-VS-A958-01 3 129274090 129274090 G C PLXND1 3'UTR 0.19 TCGA-VS-A958-01 3 129547277 129547277 G C TMCC1 5'UTR 0.39 TCGA-VS-A958-01 3 129823101 129823101 G C FAM86HP RNA 0.18 TCGA-VS-A958-01 3 134090215 134090215 G A AMOTL2 Missense_Mutation p.R21C 0.24 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 3 150177498 150177498 C G TSC22D2 3'UTR 0.18 TCGA-VS-A958-01 3 150804606 150804606 G A MED12L 5'Flank 0.20 TCGA-VS-A958-01 3 152883783 152883783 C G RAP2B 3'UTR 0.19 TCGA-VS-A958-01 3 154055832 154055832 G C GPR149 Missense_Mutation p.H618D 0.31 deleterious(0) probably_damaging(0.997) TCGA-VS-A958-01 3 154147082 154147082 G C GPR149 Missense_Mutation p.S108C 0.16 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 3 155621707 155621707 G C GMPS Missense_Mutation p.G127A 0.22 deleterious(0.01) possibly_damaging(0.842) TCGA-VS-A958-01 3 155652739 155652739 C T GMPS Missense_Mutation p.P571S 0.28 tolerated(0.27) benign(0.062) TCGA-VS-A958-01 3 160134114 160134114 G C SMC4 Missense_Mutation p.E450Q 0.27 tolerated(0.06) benign(0.409) TCGA-VS-A958-01 3 176750919 176750919 G A TBL1XR1 Missense_Mutation p.S419F 0.17 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 3 178936091 178936091 G C PIK3CA Missense_Mutation p.E545Q 0.23 tolerated(0.06) possibly_damaging(0.796) TCGA-VS-A958-01 3 182841602 182841602 C G LAMP3 3'UTR 0.22 TCGA-VS-A958-01 3 183390419 183390419 G A KLHL24 Intron 0.40 TCGA-VS-A958-01 3 183677583 183677583 G A ABCC5 Missense_Mutation p.S807L 0.17 tolerated(0.29) benign(0.002) TCGA-VS-A958-01 3 185364825 185364825 G C IGF2BP2 Missense_Mutation p.F565L 0.31 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 3 193336702 193336702 G A OPA1 Missense_Mutation p.E201K 0.25 tolerated(0.3) benign(0.028) TCGA-VS-A958-01 3 194353924 194353924 G A TMEM44 Silent p.P7P 0.29 TCGA-VS-A958-01 3 195460407 195460407 C T MUC20 3'UTR 0.08 TCGA-VS-A958-01 3 195507100 195507100 G A MUC4 Missense_Mutation p.S3784L 0.11 benign(0.316) TCGA-VS-A958-01 3 195507122 195507122 G C MUC4 Missense_Mutation p.L3777V 0.11 benign(0.374) TCGA-VS-A958-01 3 195507292 195507292 G A MUC4 Missense_Mutation p.S3720L 0.05 benign(0.316) TCGA-VS-A958-01 3 195507594 195507594 G A MUC4 Silent p.V3619V 0.08 TCGA-VS-A958-01 3 195509810 195509810 G C MUC4 Missense_Mutation p.L2881V 0.11 possibly_damaging(0.623) TCGA-VS-A958-01 3 195512755 195512755 G C MUC4 Missense_Mutation p.T1899R 0.14 unknown(0) TCGA-VS-A958-01 3 195513551 195513551 G C MUC4 Missense_Mutation p.P1634A 0.14 possibly_damaging(0.862) TCGA-VS-A958-01 3 197616396 197616396 C T IQCG 3'UTR 0.25 TCGA-VS-A958-01 3 197665535 197665535 G C IQCG Missense_Mutation p.I133M 0.26 tolerated(0.13) benign(0.04) TCGA-VS-A958-01 3 20043243 20043243 G C PP2D1 Missense_Mutation p.F123L 0.32 tolerated(0.4) benign(0.001) TCGA-VS-A958-01 3 21467093 21467093 C T ZNF385D Missense_Mutation p.G248E 0.06 deleterious(0) probably_damaging(0.994) TCGA-VS-A958-01 3 32567850 32567850 A T DYNC1LI1 3'UTR 0.29 TCGA-VS-A958-01 3 33886985 33886985 C T PDCD6IP Missense_Mutation p.H521Y 0.10 deleterious(0.03) benign(0.235) TCGA-VS-A958-01 3 37033662 37033662 C T EPM2AIP1 Missense_Mutation p.E303K 0.28 tolerated(0.84) benign(0.079) TCGA-VS-A958-01 3 38045753 38045753 G A VILL Missense_Mutation p.E605K 0.17 deleterious(0.03) benign(0.175) TCGA-VS-A958-01 3 38354904 38354904 C G SLC22A14 Missense_Mutation p.T364S 0.21 tolerated(0.22) benign(0.064) TCGA-VS-A958-01 3 38355425 38355425 C T SLC22A14 Silent p.L457L 0.33 TCGA-VS-A958-01 3 424174 424174 G A CHL1 Missense_Mutation p.E666K 0.23 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 3 4358433 4358433 C T SETMAR Missense_Mutation p.H520Y 0.11 deleterious_low_confidence(0.04) unknown(0) TCGA-VS-A958-01 3 4494685 4494685 G C SUMF1 Missense_Mutation p.Q107E 0.27 tolerated(0.58) benign(0.001) TCGA-VS-A958-01 3 45786552 45786552 C T SACM1L 3'UTR 0.58 TCGA-VS-A958-01 3 47058696 47058696 C G SETD2 Missense_Mutation p.E2528Q 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-VS-A958-01 3 47890424 47890424 G C DHX30 Missense_Mutation p.L928F 0.28 tolerated(0.3) possibly_damaging(0.549) TCGA-VS-A958-01 3 48199558 48199558 G A CDC25A 3'UTR 0.21 TCGA-VS-A958-01 3 48461334 48461334 G C PLXNB1 Silent p.L787L 0.47 TCGA-VS-A958-01 3 48623835 48623835 C T COL7A1 Silent p.V1160V 0.41 TCGA-VS-A958-01 3 4878470 4878470 G C ITPR1 Missense_Mutation p.D2666H 0.16 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 3 49162828 49162828 G A LAMB2 Missense_Mutation p.R860C 0.27 deleterious(0) possibly_damaging(0.555) TCGA-VS-A958-01 3 5022043 5022043 G C BHLHE40 Missense_Mutation p.E70Q 0.18 deleterious(0) benign(0.351) TCGA-VS-A958-01 3 50385665 50385665 C T NPRL2 Silent p.K274K 0.21 TCGA-VS-A958-01 3 51413239 51413239 G A DOCK3 Missense_Mutation p.D1825N 0.06 deleterious_low_confidence(0.04) probably_damaging(0.982) TCGA-VS-A958-01 3 52471576 52471576 G C SEMA3G Silent p.L615L 0.25 TCGA-VS-A958-01 3 52550466 52550466 G A STAB1 Silent p.Q1413Q 0.27 TCGA-VS-A958-01 3 58140574 58140574 G A FLNB Missense_Mutation p.E2262K 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-VS-A958-01 3 69096768 69096768 G A TMF1 Missense_Mutation p.S363L 0.19 tolerated_low_confidence(0.09) benign(0.005) TCGA-VS-A958-01 3 9691176 9691176 G A MTMR14 5'UTR 0.28 TCGA-VS-A958-01 3 9952966 9952966 G C IL17RE Missense_Mutation p.E352Q 0.32 deleterious(0.01) probably_damaging(0.917) TCGA-VS-A958-01 4 102751096 102751096 C T BANK1 Missense_Mutation p.R68W 0.05 tolerated(0.19) benign(0.002) TCGA-VS-A958-01 4 103717745 103717745 C G UBE2D3 3'Flank 0.39 TCGA-VS-A958-01 4 10446572 10446572 C T ZNF518B Missense_Mutation p.E461K 0.28 tolerated(0.29) benign(0.011) TCGA-VS-A958-01 4 106853794 106853794 G C NPNT Missense_Mutation p.D97H 0.20 tolerated(0.3) benign(0.003) TCGA-VS-A958-01 4 109087505 109087505 C T LEF1 Intron 0.16 TCGA-VS-A958-01 4 110651080 110651080 C G PLA2G12A 5'UTR 0.62 TCGA-VS-A958-01 4 110971055 110971055 A T ELOVL6 3'UTR 0.06 TCGA-VS-A958-01 4 111480873 111480873 C G ENPEP Missense_Mutation p.L905V 0.06 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 4 114468803 114468803 C T CAMK2D Intron 0.51 TCGA-VS-A958-01 4 122872766 122872766 C T TRPC3 Missense_Mutation p.D24N 0.39 deleterious_low_confidence(0.03) benign(0) TCGA-VS-A958-01 4 13603042 13603042 T A BOD1L1 Missense_Mutation p.S1828C 0.23 possibly_damaging(0.855) TCGA-VS-A958-01 4 139085299 139085299 C G SLC7A11 3'UTR 0.20 TCGA-VS-A958-01 4 140428310 140428310 G A SETD7 3'UTR 0.32 TCGA-VS-A958-01 4 141310227 141310227 G A CLGN 3'UTR 0.43 TCGA-VS-A958-01 4 145573799 145573799 G C HHIP Missense_Mutation p.E108Q 0.27 tolerated(0.28) benign(0.133) TCGA-VS-A958-01 4 164393992 164393992 G A TKTL2 Nonsense_Mutation p.Q299* 0.25 TCGA-VS-A958-01 4 166244103 166244103 C T KLHL2 3'Flank 0.24 TCGA-VS-A958-01 4 175412433 175412433 C G HPGD 3'UTR 0.21 TCGA-VS-A958-01 4 177136848 177136848 C T ASB5 Missense_Mutation p.R298Q 0.16 deleterious(0) probably_damaging(0.964) TCGA-VS-A958-01 4 26638856 26638856 G A TBC1D19 Silent p.L106L 0.22 TCGA-VS-A958-01 4 38910299 38910299 C A FAM114A1 Silent p.G248G 0.34 TCGA-VS-A958-01 4 39456544 39456544 G C RPL9 Missense_Mutation p.Q138E 0.27 tolerated(0.31) benign(0.042) TCGA-VS-A958-01 4 40776341 40776341 C G NSUN7 Nonsense_Mutation p.S183* 0.26 TCGA-VS-A958-01 4 41635584 41635584 G A LIMCH1 Intron 0.33 TCGA-VS-A958-01 4 55592120 55592120 G A KIT Missense_Mutation p.A482T 0.31 tolerated(0.55) benign(0.001) TCGA-VS-A958-01 4 66361242 66361242 G A EPHA5 Silent p.F310F 0.30 TCGA-VS-A958-01 4 68995570 68995570 C T TMPRSS11F 5'UTR 0.44 TCGA-VS-A958-01 4 71654609 71654609 G C RUFY3 Missense_Mutation p.E386D 0.22 tolerated(0.05) probably_damaging(0.998) TCGA-VS-A958-01 4 76898816 76898816 C T SDAD1 Missense_Mutation p.D130N 0.45 deleterious(0.03) possibly_damaging(0.74) TCGA-VS-A958-01 4 79410181 79410181 G C FRAS1 Missense_Mutation p.E2969Q 0.22 possibly_damaging(0.616) TCGA-VS-A958-01 5 10280649 10280649 C A CMBL Missense_Mutation p.K218N 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-VS-A958-01 5 115346544 115346544 G A AQPEP Missense_Mutation p.D734N 0.21 tolerated(0.3) benign(0.023) TCGA-VS-A958-01 5 118691808 118691808 C G TNFAIP8 Missense_Mutation p.S8C 0.33 tolerated_low_confidence(0.16) benign(0.041) TCGA-VS-A958-01 5 125805451 125805451 G A GRAMD3 Missense_Mutation p.E111K 0.42 deleterious(0) possibly_damaging(0.488) TCGA-VS-A958-01 5 128369099 128369099 G A SLC27A6 3'UTR 0.38 TCGA-VS-A958-01 5 1338022 1338022 C G CLPTM1L Silent p.L225L 0.15 TCGA-VS-A958-01 5 133945308 133945308 C T SAR1B Missense_Mutation p.D101N 0.59 deleterious(0) probably_damaging(0.977) TCGA-VS-A958-01 5 134193524 134193524 G A C5orf24 3'UTR 0.13 TCGA-VS-A958-01 5 136328249 136328249 C T SPOCK1 Silent p.L210L 0.31 TCGA-VS-A958-01 5 13737384 13737384 G A DNAH5 Missense_Mutation p.S3811L 0.41 benign(0.307) TCGA-VS-A958-01 5 138629656 138629656 G C MATR3 Intron 0.62 TCGA-VS-A958-01 5 140174983 140174983 C G PCDHA2 Nonsense_Mutation p.S145* 0.37 TCGA-VS-A958-01 5 140181517 140181517 G A PCDHA3 Silent p.T245T 0.56 TCGA-VS-A958-01 5 140627660 140627660 G C PCDHB15 3'UTR 0.19 TCGA-VS-A958-01 5 140682429 140682429 G C SLC25A2 3'UTR 0.07 TCGA-VS-A958-01 5 141020036 141020036 G A FCHSD1 3'UTR 0.43 TCGA-VS-A958-01 5 1411457 1411457 G A SLC6A3 Silent p.I390I 0.36 TCGA-VS-A958-01 5 141391507 141391507 C T GNPDA1 Missense_Mutation p.E32K 0.67 tolerated(0.07) benign(0.003) TCGA-VS-A958-01 5 150090521 150090521 G A DCTN4 3'UTR 0.25 TCGA-VS-A958-01 5 150282726 150282726 C G ZNF300 Missense_Mutation p.E14Q 0.65 tolerated(0.43) benign(0.042) TCGA-VS-A958-01 5 150945747 150945747 C G FAT2 Missense_Mutation p.E916Q 0.61 benign(0.395) TCGA-VS-A958-01 5 159682658 159682658 G A CCNJL Missense_Mutation p.S262F 0.58 deleterious(0) probably_damaging(0.982) TCGA-VS-A958-01 5 162909769 162909769 G A HMMR Missense_Mutation p.E503K 0.65 tolerated(0.16) benign(0.253) TCGA-VS-A958-01 5 16475301 16475301 G C FAM134B Nonsense_Mutation p.S348* 0.12 TCGA-VS-A958-01 5 169931602 169931602 C T KCNIP1 Missense_Mutation p.S9L 0.58 tolerated_low_confidence(0.11) benign(0.046) TCGA-VS-A958-01 5 172197301 172197301 C G DUSP1 Missense_Mutation p.E126Q 0.17 tolerated(0.05) benign(0.434) TCGA-VS-A958-01 5 174156417 174156417 C T MSX2 Missense_Mutation p.A212V 0.66 deleterious(0) probably_damaging(0.915) TCGA-VS-A958-01 5 175795807 175795807 C T ARL10 Intron 0.59 TCGA-VS-A958-01 5 175957167 175957167 C G RNF44 Missense_Mutation p.R281T 0.67 deleterious(0) possibly_damaging(0.58) TCGA-VS-A958-01 5 178310234 178310234 C G ZNF354B Missense_Mutation p.Q261E 0.06 deleterious(0.05) benign(0.305) TCGA-VS-A958-01 5 33467673 33467673 G A TARS Missense_Mutation p.E711K 0.19 deleterious(0.05) benign(0.364) TCGA-VS-A958-01 5 33467697 33467697 G A TARS Missense_Mutation p.V719I 0.15 deleterious(0.01) possibly_damaging(0.768) TCGA-VS-A958-01 5 33467802 33467802 G C TARS Missense_Mutation p.E754Q 0.15 deleterious(0.03) benign(0.175) TCGA-VS-A958-01 5 35704721 35704721 G A SPEF2 Missense_Mutation p.D822N 0.39 tolerated(0.12) benign(0.001) TCGA-VS-A958-01 5 36975905 36975905 C T NIPBL Missense_Mutation p.S299F 0.17 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-VS-A958-01 5 37006548 37006548 C G NIPBL Missense_Mutation p.I1315M 0.35 tolerated(0.12) benign(0.235) TCGA-VS-A958-01 5 37327822 37327822 G C NUP155 Missense_Mutation p.Q645E 0.45 tolerated(0.31) benign(0.017) TCGA-VS-A958-01 5 41927286 41927286 C G FBXO4 Missense_Mutation p.L121V 0.06 tolerated(0.83) benign(0.001) TCGA-VS-A958-01 5 436084 436084 C T AHRR 3'UTR 0.24 TCGA-VS-A958-01 5 5146398 5146398 G A ADAMTS16 Missense_Mutation p.D111N 0.11 tolerated(0.36) possibly_damaging(0.579) TCGA-VS-A958-01 5 65349313 65349313 C T ERBB2IP Missense_Mutation p.H723Y 0.23 tolerated_low_confidence(0.32) benign(0.044) TCGA-VS-A958-01 5 73923851 73923851 C T ENC1 3'UTR 0.26 TCGA-VS-A958-01 5 7789799 7789799 C T ADCY2 Silent p.F838F 0.20 TCGA-VS-A958-01 5 7828083 7828083 G A ADCY2 3'UTR 0.25 TCGA-VS-A958-01 5 86658476 86658476 C T RASA1 Missense_Mutation p.L481F 0.38 deleterious(0) possibly_damaging(0.812) TCGA-VS-A958-01 5 90667214 90667214 C T ARRDC3 3'UTR 0.38 TCGA-VS-A958-01 5 9202230 9202230 C T SEMA5A Missense_Mutation p.D257N 0.29 deleterious(0) possibly_damaging(0.57) TCGA-VS-A958-01 5 95011326 95011326 C T SPATA9 Silent p.Q56Q 0.27 TCGA-VS-A958-01 5 96518850 96518850 C T RIOK2 Missense_Mutation p.D16N 0.35 deleterious(0.01) probably_damaging(0.934) TCGA-VS-A958-01 6 10763089 10763089 G C MAK 3'UTR 0.08 TCGA-VS-A958-01 6 109233723 109233723 G A ARMC2 Missense_Mutation p.G438S 0.21 tolerated(0.18) benign(0.027) TCGA-VS-A958-01 6 110931440 110931440 G A CDK19 3'UTR 0.30 TCGA-VS-A958-01 6 117589514 117589514 G A VGLL2 Missense_Mutation p.R84H 0.26 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 6 118801586 118801586 G C CEP85L Silent p.L615L 0.12 TCGA-VS-A958-01 6 121769556 121769556 C T GJA1 3'UTR 0.22 TCGA-VS-A958-01 6 125233892 125233892 G A RP11-510H23.1 RNA 0.28 TCGA-VS-A958-01 6 127476481 127476481 G A RSPO3 Missense_Mutation p.E178K 0.28 tolerated(0.25) benign(0.1) TCGA-VS-A958-01 6 131897859 131897859 G C ARG1 Missense_Mutation p.E38D 0.23 tolerated(0.35) benign(0.001) TCGA-VS-A958-01 6 134303725 134303725 G C TBPL1 Missense_Mutation p.R52T 0.20 deleterious(0) probably_damaging(0.996) TCGA-VS-A958-01 6 143074105 143074105 G C HIVEP2 3'UTR 0.22 TCGA-VS-A958-01 6 143823218 143823218 C T FUCA2 Missense_Mutation p.M335I 0.27 tolerated(0.61) benign(0.028) TCGA-VS-A958-01 6 143823536 143823536 C A FUCA2 Nonsense_Mutation p.E307* 0.22 TCGA-VS-A958-01 6 144744729 144744729 C G UTRN Silent p.V93V 0.23 TCGA-VS-A958-01 6 146956657 146956657 G A ADGB Missense_Mutation p.G74E 0.32 deleterious(0) probably_damaging(0.985) TCGA-VS-A958-01 6 152129274 152129281 CCGGCCTC - ESR1 Frame_Shift_Del p.G77Lfs*6 0.29 TCGA-VS-A958-01 6 152473145 152473145 C G SYNE1 Missense_Mutation p.Q8087H 0.35 probably_damaging(0.98) TCGA-VS-A958-01 6 159420602 159420602 C A RSPH3 Missense_Mutation p.R136L 0.32 tolerated_low_confidence(0.05) benign(0.185) TCGA-VS-A958-01 6 160494811 160494811 G A IGF2R Missense_Mutation p.G1657E 0.24 tolerated(0.11) probably_damaging(0.938) TCGA-VS-A958-01 6 160494870 160494870 G A IGF2R Missense_Mutation p.D1677N 0.21 tolerated(0.12) benign(0.137) TCGA-VS-A958-01 6 160679750 160679750 C G SLC22A2 Missense_Mutation p.E14Q 0.07 deleterious(0.01) possibly_damaging(0.846) TCGA-VS-A958-01 6 161575076 161575076 C T AGPAT4 Intron 0.32 TCGA-VS-A958-01 6 16327100 16327100 T A ATXN1 Missense_Mutation p.H481L 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-VS-A958-01 6 168708614 168708614 C T DACT2 Missense_Mutation p.R608H 0.28 deleterious(0.01) possibly_damaging(0.839) TCGA-VS-A958-01 6 24687887 24687887 G A ACOT13 Intron 0.34 TCGA-VS-A958-01 6 26545774 26545774 C T HMGN4 3'UTR 0.21 TCGA-VS-A958-01 6 27782242 27782242 C A HIST1H2AJ Nonsense_Mutation p.E93* 0.08 TCGA-VS-A958-01 6 27806029 27806029 C G HIST1H2AK Missense_Mutation p.R30P 0.37 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VS-A958-01 6 27834613 27834613 C T HIST1H1B 3'UTR 0.26 TCGA-VS-A958-01 6 28478631 28478631 G A GPX6 Silent p.L46L 0.17 TCGA-VS-A958-01 6 29365381 29365381 G C OR12D2 Missense_Mutation p.R302T 0.34 tolerated(0.11) benign(0.072) TCGA-VS-A958-01 6 31613231 31613231 G C BAG6 Missense_Mutation p.H363D 0.11 deleterious(0) probably_damaging(0.986) TCGA-VS-A958-01 6 31748513 31748513 G A VARS Silent p.L922L 0.16 TCGA-VS-A958-01 6 31783513 31783513 G C HSPA1A 5'UTR 0.09 TCGA-VS-A958-01 6 31846727 31846727 C T SLC44A4 Missense_Mutation p.E11K 0.26 tolerated(0.62) benign(0.003) TCGA-VS-A958-01 6 32948838 32948838 G C BRD2 3'UTR 0.22 TCGA-VS-A958-01 6 33288291 33288291 C G DAXX Missense_Mutation p.D373H 0.27 deleterious(0) probably_damaging(0.968) TCGA-VS-A958-01 6 33288301 33288301 C T DAXX Missense_Mutation p.M369I 0.29 tolerated(0.15) benign(0.012) TCGA-VS-A958-01 6 33381825 33381825 G C PHF1 Missense_Mutation p.E231Q 0.25 tolerated(0.13) benign(0.053) TCGA-VS-A958-01 6 33650351 33650351 C A ITPR3 Silent p.L1509L 0.21 TCGA-VS-A958-01 6 34850845 34850845 C T TAF11 Missense_Mutation p.D62N 0.27 deleterious(0.04) possibly_damaging(0.678) TCGA-VS-A958-01 6 35289011 35289011 C G DEF6 Missense_Mutation p.L574V 0.23 tolerated(0.57) benign(0.002) TCGA-VS-A958-01 6 36953768 36953768 G A MTCH1 Missense_Mutation p.S61L 0.30 deleterious_low_confidence(0.04) unknown(0) TCGA-VS-A958-01 6 394860 394860 G A IRF4 Missense_Mutation p.D86N 0.26 deleterious(0.01) possibly_damaging(0.881) TCGA-VS-A958-01 6 39873365 39873365 C G MOCS1 3'UTR 0.36 TCGA-VS-A958-01 6 4069853 4069853 C T FAM217A Missense_Mutation p.E202K 0.19 deleterious(0) probably_damaging(0.986) TCGA-VS-A958-01 6 41076145 41076145 G A ADCY10P1 RNA 0.24 TCGA-VS-A958-01 6 41898395 41898395 G C BYSL Missense_Mutation p.G198A 0.26 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 6 43038568 43038568 G C KLC4 Missense_Mutation p.D392H 0.24 tolerated(0.08) probably_damaging(0.986) TCGA-VS-A958-01 6 43266470 43266470 C G SLC22A7 Missense_Mutation p.S125C 0.25 tolerated(0.06) probably_damaging(0.987) TCGA-VS-A958-01 6 44144629 44144629 C T CAPN11 Silent p.L377L 0.14 TCGA-VS-A958-01 6 44216418 44216418 C G HSP90AB1 Missense_Mutation p.Q18E 0.11 deleterious(0.02) benign(0.413) TCGA-VS-A958-01 6 44279218 44279218 C T AARS2 Missense_Mutation p.E164K 0.21 tolerated(1) benign(0.005) TCGA-VS-A958-01 6 45870826 45870826 C T CLIC5 Silent p.%3D 0.24 TCGA-VS-A958-01 6 45917088 45917088 G A CLIC5 Silent p.P227P 0.16 TCGA-VS-A958-01 6 47869275 47869275 C T PTCHD4 Intron 0.23 TCGA-VS-A958-01 6 49754360 49754360 G A PGK2 Silent p.L181L 0.27 TCGA-VS-A958-01 6 56989639 56989639 G A ZNF451 Silent p.E98E 0.22 TCGA-VS-A958-01 6 5999377 5999377 C G NRN1 Silent p.A87A 0.25 TCGA-VS-A958-01 6 7562925 7562925 C T DSP Missense_Mutation p.S213L 0.20 benign(0.14) TCGA-VS-A958-01 6 7575575 7575575 G T DSP Missense_Mutation p.M828I 0.22 benign(0.034) TCGA-VS-A958-01 6 76023192 76023192 G A FILIP1 Missense_Mutation p.L786F 0.26 deleterious(0.02) benign(0.132) TCGA-VS-A958-01 7 100274372 100274372 C T GNB2 Silent p.L51L 0.13 TCGA-VS-A958-01 7 100463466 100463466 C T SLC12A9 Silent p.L662L 0.22 TCGA-VS-A958-01 7 100861338 100861338 C G ZNHIT1 5'UTR 0.20 TCGA-VS-A958-01 7 102574446 102574446 G C LRRC17 Missense_Mutation p.R29P 0.19 deleterious(0.01) possibly_damaging(0.481) TCGA-VS-A958-01 7 103051923 103051923 C T SLC26A5 Missense_Mutation p.D172N 0.26 deleterious(0) probably_damaging(0.995) TCGA-VS-A958-01 7 104786961 104786961 G A SRPK2 Missense_Mutation p.P256S 0.22 deleterious(0.01) probably_damaging(0.97) TCGA-VS-A958-01 7 107880551 107880551 C G NRCAM 5'UTR 0.15 TCGA-VS-A958-01 7 108524538 108524538 G A C7orf66 Missense_Mutation p.H18Y 0.31 tolerated_low_confidence(0.08) possibly_damaging(0.607) TCGA-VS-A958-01 7 116339695 116339695 C T MET Missense_Mutation p.S186L 0.16 tolerated(0.37) benign(0) TCGA-VS-A958-01 7 121701963 121701963 A T PTPRZ1 3'UTR 0.23 TCGA-VS-A958-01 7 12610250 12610250 T A SCIN 5'Flank 0.18 TCGA-VS-A958-01 7 132169616 132169616 G A PLXNA4 Intron 0.25 TCGA-VS-A958-01 7 134215509 134215509 G C AKR1B10 Missense_Mutation p.E61Q 0.24 tolerated(0.35) probably_damaging(1) TCGA-VS-A958-01 7 138749651 138749651 G T ZC3HAV1 Nonsense_Mutation p.S656* 0.23 TCGA-VS-A958-01 7 139026164 139026164 C T LUC7L2 Nonsense_Mutation p.R12* 0.21 TCGA-VS-A958-01 7 139824475 139824475 C G KDM7A Missense_Mutation p.D333H 0.20 deleterious(0) probably_damaging(0.932) TCGA-VS-A958-01 7 142045659 142045659 G C TRBV4-2 Missense_Mutation p.E63Q 0.05 tolerated(0.2) benign(0.224) TCGA-VS-A958-01 7 143080194 143080194 C G ZYX Missense_Mutation p.P268A 0.27 tolerated(0.11) probably_damaging(0.996) TCGA-VS-A958-01 7 149509354 149509354 G C SSPO Intron 0.36 TCGA-VS-A958-01 7 150269429 150269429 G A GIMAP4 Missense_Mutation p.D91N 0.26 tolerated(0.06) possibly_damaging(0.777) TCGA-VS-A958-01 7 150710398 150710398 G A NOS3 Silent p.Q1062Q 0.17 TCGA-VS-A958-01 7 151877100 151877100 G C KMT2C Missense_Mutation p.Q2421E 0.25 benign(0.09) TCGA-VS-A958-01 7 151878464 151878464 G A KMT2C Nonsense_Mutation p.Q2161* 0.31 TCGA-VS-A958-01 7 152027750 152027750 G A KMT2C Nonsense_Mutation p.Q109* 0.22 TCGA-VS-A958-01 7 16501314 16501314 G A SOSTDC1 3'UTR 0.18 TCGA-VS-A958-01 7 22986735 22986735 G C FAM126A Intron 0.35 TCGA-VS-A958-01 7 23544460 23544460 C T TRA2A 3'UTR 0.20 TCGA-VS-A958-01 7 23871798 23871798 G C STK31 Missense_Mutation p.R958T 0.18 deleterious(0.04) benign(0.439) TCGA-VS-A958-01 7 2485865 2485865 C T AC004840.9 RNA 0.14 TCGA-VS-A958-01 7 26224212 26224212 A T NFE2L3 Silent p.S298S 0.23 TCGA-VS-A958-01 7 27147998 27147998 C T HOXA3 Missense_Mutation p.E290K 0.33 deleterious(0.01) benign(0.176) TCGA-VS-A958-01 7 27282238 27282238 G C EVX1 5'UTR 0.31 TCGA-VS-A958-01 7 33069243 33069243 C G NT5C3A Intron 0.32 TCGA-VS-A958-01 7 34867184 34867184 T C NPSR1 Missense_Mutation p.L217P 0.25 deleterious(0.05) probably_damaging(0.996) TCGA-VS-A958-01 7 37172785 37172785 G A ELMO1 Silent p.L381L 0.16 TCGA-VS-A958-01 7 38431463 38431463 C T AMPH Silent p.Q588Q 0.23 TCGA-VS-A958-01 7 42012094 42012094 G A GLI3 Missense_Mutation p.R649W 0.21 deleterious(0) probably_damaging(0.999) TCGA-VS-A958-01 7 44043653 44043653 G A SPDYE1 Intron 0.23 TCGA-VS-A958-01 7 44046971 44046971 G A SPDYE1 Missense_Mutation p.R246H 0.26 tolerated(0.1) benign(0.04) TCGA-VS-A958-01 7 44530057 44530057 G A NUDCD3 Missense_Mutation p.S48L 0.17 tolerated(0.09) benign(0.064) TCGA-VS-A958-01 7 56007522 56007522 G A ZNF713 Silent p.L372L 0.29 TCGA-VS-A958-01 7 56169431 56169431 G C CHCHD2 3'UTR 0.19 TCGA-VS-A958-01 7 5642919 5642919 G C FSCN1 Missense_Mutation p.E288D 0.25 tolerated(0.13) probably_damaging(0.989) TCGA-VS-A958-01 7 57188560 57188560 T A ZNF479 Missense_Mutation p.N188Y 0.06 deleterious(0) benign(0.107) TCGA-VS-A958-01 7 635909 635909 G A PRKAR1B Silent p.I194I 0.18 TCGA-VS-A958-01 7 65751534 65751534 C G TPST1 Silent p.V294V 0.26 TCGA-VS-A958-01 7 66105046 66105046 G C KCTD7 3'UTR 0.19 TCGA-VS-A958-01 7 72658185 72658185 G A GTF2IRD2P1 RNA 0.39 TCGA-VS-A958-01 7 72658450 72658450 G C GTF2IRD2P1 RNA 0.43 TCGA-VS-A958-01 7 73151676 73151676 C T ABHD11 Missense_Mutation p.E170K 0.24 tolerated(0.65) benign(0.02) TCGA-VS-A958-01 7 74120746 74120746 G A GTF2I Missense_Mutation p.E223K 0.19 deleterious(0) possibly_damaging(0.813) TCGA-VS-A958-01 7 74193603 74193603 C G NCF1 Missense_Mutation p.A77G 0.21 tolerated(0.42) benign(0.017) TCGA-VS-A958-01 7 74193748 74193748 C G NCF1 Silent p.L125L 0.13 TCGA-VS-A958-01 7 87825825 87825825 G C ADAM22 3'UTR 0.15 TCGA-VS-A958-01 7 91736663 91736663 G A AKAP9 Missense_Mutation p.E3825K 0.22 possibly_damaging(0.661) TCGA-VS-A958-01 7 92140270 92140270 C T PEX1 Silent p.K525K 0.27 TCGA-VS-A958-01 7 92234507 92234507 G A CDK6 3'UTR 0.25 TCGA-VS-A958-01 7 94058712 94058712 C T COL1A2 Silent p.F1308F 0.30 TCGA-VS-A958-01 7 94539464 94539464 C G PPP1R9A Silent p.L13L 0.25 TCGA-VS-A958-01 7 96115647 96115647 C T C7orf76 Missense_Mutation p.S32N 0.19 deleterious_low_confidence(0.05) benign(0.011) TCGA-VS-A958-01 7 97851806 97851806 C T TECPR1 Missense_Mutation p.D986N 0.16 deleterious(0.02) probably_damaging(0.965) TCGA-VS-A958-01 7 99258271 99258271 G C CYP3A5 Missense_Mutation p.L293V 0.29 tolerated(0.29) benign(0.001) TCGA-VS-A958-01 8 101011496 101011496 C T RGS22 Silent p.K981K 0.33 TCGA-VS-A958-01 8 101271420 101271420 G C RNF19A Missense_Mutation p.F627L 0.28 tolerated_low_confidence(0.77) benign(0.001) TCGA-VS-A958-01 8 104933920 104933920 C T RIMS2 Nonsense_Mutation p.Q702* 0.24 TCGA-VS-A958-01 8 107722905 107722905 C T OXR1 Silent p.L561L 0.27 TCGA-VS-A958-01 8 117782544 117782544 C T UTP23 Missense_Mutation p.S101L 0.05 deleterious(0.01) benign(0.285) TCGA-VS-A958-01 8 120118329 120118329 C T COLEC10 Missense_Mutation p.H245Y 0.15 tolerated(0.11) benign(0.016) TCGA-VS-A958-01 8 12293862 12293862 G A FAM86B2 5'Flank 0.28 TCGA-VS-A958-01 8 12950137 12950137 C T DLC1 Missense_Mutation p.E1242K 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A958-01 8 144733296 144733296 C G ZNF623 Silent p.L418L 0.28 TCGA-VS-A958-01 8 1449594 1449594 C G DLGAP2 5'UTR 0.19 TCGA-VS-A958-01 8 145267940 145267940 C T MROH1 Intron 0.25 TCGA-VS-A958-01 8 145576951 145576951 G C TMEM249 3'UTR 0.35 TCGA-VS-A958-01 8 145651441 145651441 C G VPS28 Silent p.V24V 0.30 TCGA-VS-A958-01 8 17814110 17814110 C T PCM1 Intron 0.29 TCGA-VS-A958-01 8 19824646 19824646 G C LPL 3'UTR 0.28 TCGA-VS-A958-01 8 25298131 25298131 C T KCTD9 Silent p.L91L 0.27 TCGA-VS-A958-01 8 25298139 25298139 C G KCTD9 Missense_Mutation p.D89H 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A958-01 8 37691613 37691613 C T GPR124 Silent p.A525A 0.37 TCGA-VS-A958-01 8 37697647 37697647 C T GPR124 Silent p.I840I 0.12 TCGA-VS-A958-01 8 37794549 37794549 C G GOT1L1 Silent p.V182V 0.32 TCGA-VS-A958-01 8 38189097 38189097 C T WHSC1L1 Missense_Mutation p.R306Q 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-VS-A958-01 8 39618719 39618719 G A ADAM2 Missense_Mutation p.S530L 0.22 tolerated(0.15) benign(0.159) TCGA-VS-A958-01 8 41790141 41790141 G C KAT6A Missense_Mutation p.S1866C 0.25 unknown(0) TCGA-VS-A958-01 8 42213048 42213048 G A POLB Missense_Mutation p.E129K 0.24 tolerated(0.62) benign(0.008) TCGA-VS-A958-01 8 48686876 48686876 C G PRKDC Missense_Mutation p.R4081P 0.28 possibly_damaging(0.689) TCGA-VS-A958-01 8 48736430 48736430 G A PRKDC Nonsense_Mutation p.Q2970* 0.34 TCGA-VS-A958-01 8 48765346 48765346 C T PRKDC Splice_Site p.X2297_splice 0.27 TCGA-VS-A958-01 8 49643967 49643967 C T EFCAB1 Missense_Mutation p.A52T 0.18 tolerated(0.81) benign(0.001) TCGA-VS-A958-01 8 51449235 51449235 C T SNTG1 Intron 0.16 TCGA-VS-A958-01 8 52320830 52320830 G C PXDNL Silent p.L1118L 0.26 TCGA-VS-A958-01 8 56438372 56438372 C T XKR4 3'UTR 0.24 TCGA-VS-A958-01 8 57892757 57892757 C T IMPAD1 Splice_Site p.X130_splice 0.25 TCGA-VS-A958-01 8 61655291 61655291 C T CHD7 Nonsense_Mutation p.Q434* 0.31 TCGA-VS-A958-01 8 61763842 61763842 G C CHD7 Missense_Mutation p.E1877Q 0.19 benign(0.115) TCGA-VS-A958-01 8 65494795 65494795 G C BHLHE22 3'UTR 0.18 TCGA-VS-A958-01 8 67504761 67504761 C G MYBL1 Missense_Mutation p.D261H 0.05 deleterious(0) probably_damaging(1) TCGA-VS-A958-01 8 93026897 93026897 C T RUNX1T1 Silent p.L137L 0.26 TCGA-VS-A958-01 9 101017769 101017769 C G TBC1D2 Missense_Mutation p.E19Q 0.22 tolerated(0.07) unknown(0) TCGA-VS-A958-01 9 103070851 103070851 G C TEX10 Missense_Mutation p.S799C 0.07 tolerated(0.14) possibly_damaging(0.894) TCGA-VS-A958-01 9 104324621 104324621 C T RNF20 Missense_Mutation p.R949C 0.24 deleterious(0) probably_damaging(0.998) TCGA-VS-A958-01 9 109746655 109746655 G A ZNF462 Missense_Mutation p.E2341K 0.23 possibly_damaging(0.524) TCGA-VS-A958-01 9 111640937 111640937 C T IKBKAP Silent p.L1222L 0.42 TCGA-VS-A958-01 9 114123980 114123980 G C KIAA0368 3'UTR 0.25 TCGA-VS-A958-01 9 114476775 114476775 C G C9orf84 Missense_Mutation p.E725Q 0.22 tolerated(0.06) possibly_damaging(0.858) TCGA-VS-A958-01 9 115931946 115931946 C A FKBP15 Nonsense_Mutation p.E1015* 0.24 TCGA-VS-A958-01 9 115973841 115973841 G C FKBP15 Missense_Mutation p.Q29E 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-VS-A958-01 9 117853076 117853076 C T TNC Silent p.E74E 0.37 TCGA-VS-A958-01 9 123620272 123620272 C T PHF19 Missense_Mutation p.E565K 0.36 deleterious(0.01) benign(0.142) TCGA-VS-A958-01 9 125652499 125652499 C A RC3H2 Intron 0.31 TCGA-VS-A958-01 9 126776353 126776353 C G LHX2 Silent p.L78L 0.24 TCGA-VS-A958-01 9 128074749 128074749 G A GAPVD1 Missense_Mutation p.R487H 0.12 tolerated(0.05) possibly_damaging(0.895) TCGA-VS-A958-01 9 129458226 129458226 C T LMX1B Missense_Mutation p.P343L 0.30 tolerated(0.09) benign(0.099) TCGA-VS-A958-01 9 129642289 129642289 C G ZBTB34 Nonsense_Mutation p.S200* 0.22 TCGA-VS-A958-01 9 130891234 130891234 G A AL590708.2 Missense_Mutation p.G150D 0.20 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-VS-A958-01 9 130914255 130914255 C T LCN2 Silent p.F142F 0.21 TCGA-VS-A958-01 9 130914271 130914271 C T LCN2 Nonsense_Mutation p.Q148* 0.21 TCGA-VS-A958-01 9 131394942 131394942 G T SPTAN1 Nonsense_Mutation p.E2369* 0.25 TCGA-VS-A958-01 9 131395906 131395906 C G SPTAN1 3'UTR 0.09 TCGA-VS-A958-01 9 131730791 131730791 C T NUP188 Missense_Mutation p.R198C 0.08 deleterious(0) probably_damaging(0.97) TCGA-VS-A958-01 9 131847796 131847796 G A DOLPP1 Splice_Site p.X121_splice 0.19 TCGA-VS-A958-01 9 131909912 131909912 C T PPP2R4 3'UTR 0.27 TCGA-VS-A958-01 9 132662808 132662808 C T FNBP1 Missense_Mutation p.E483K 0.16 tolerated(0.08) benign(0.13) TCGA-VS-A958-01 9 138702020 138702020 G A CAMSAP1 3'UTR 0.30 TCGA-VS-A958-01 9 139730261 139730261 C T RABL6 Missense_Mutation p.S259L 0.31 deleterious(0.04) possibly_damaging(0.598) TCGA-VS-A958-01 9 139735030 139735030 G C RABL6 3'UTR 0.24 TCGA-VS-A958-01 9 139743672 139743672 C G PHPT1 5'UTR 0.32 TCGA-VS-A958-01 9 139743811 139743811 C G PHPT1 5'UTR 0.34 TCGA-VS-A958-01 9 139747808 139747808 C T MAMDC4 Missense_Mutation p.R76W 0.21 deleterious(0) probably_damaging(0.944) TCGA-VS-A958-01 9 139903460 139903460 C G ABCA2 Missense_Mutation p.Q2291H 0.21 tolerated(0.13) benign(0.028) TCGA-VS-A958-01 9 140000170 140000170 C T MAN1B1 Intron 0.26 TCGA-VS-A958-01 9 140000606 140000606 C T MAN1B1 Silent p.I428I 0.17 TCGA-VS-A958-01 9 14851323 14851323 G A FREM1 Nonsense_Mutation p.Q371* 0.21 TCGA-VS-A958-01 9 19376564 19376564 C T RPS6 Silent p.L194L 0.25 TCGA-VS-A958-01 9 19379614 19379614 C T RPS6 Silent p.L3L 0.27 TCGA-VS-A958-01 9 27172691 27172691 G A TEK Missense_Mutation p.D236N 0.21 tolerated(0.49) benign(0.084) TCGA-VS-A958-01 9 32572980 32572980 C T NDUFB6 Missense_Mutation p.E27K 0.21 deleterious(0.01) possibly_damaging(0.889) TCGA-VS-A958-01 9 35737734 35737734 G A GBA2 Intron 0.18 TCGA-VS-A958-01 9 35811187 35811187 C G SPAG8 Missense_Mutation p.E286Q 0.19 tolerated(0.11) possibly_damaging(0.455) TCGA-VS-A958-01 9 36123933 36123933 G A RECK 3'UTR 0.26 TCGA-VS-A958-01 9 37746626 37746626 C T FRMPD1 Nonsense_Mutation p.Q1533* 0.23 TCGA-VS-A958-01 9 379778 379778 C G DOCK8 Missense_Mutation p.F816L 0.28 tolerated(1) benign(0.02) TCGA-VS-A958-01 9 40774749 40774749 C G ZNF658 Missense_Mutation p.D176H 0.28 tolerated(0.08) possibly_damaging(0.52) TCGA-VS-A958-01 9 70919938 70919938 G A FOXD4L3 3'UTR 0.10 TCGA-VS-A958-01 9 71395850 71395850 C T FAM122A Missense_Mutation p.S257L 0.08 deleterious(0) probably_damaging(0.913) TCGA-VS-A958-01 9 75516133 75516133 C G ALDH1A1 Missense_Mutation p.K499N 0.24 deleterious(0.02) probably_damaging(1) TCGA-VS-A958-01 9 8317615 8317615 G A PTPRD 3'UTR 0.15 TCGA-VS-A958-01 9 91609630 91609630 G A C9orf47 3'UTR 0.32 TCGA-VS-A958-01 9 95277196 95277196 C T ECM2 Silent p.E257E 0.28 TCGA-VS-A958-01 9 96305578 96305578 C T FAM120A Missense_Mutation p.L662F 0.21 deleterious(0.04) probably_damaging(0.963) TCGA-VS-A958-01 9 97221732 97221732 G A HIATL1 3'UTR 0.26 TCGA-VS-A958-01 9 97767829 97767829 G C C9orf3 Silent p.T682T 0.35 TCGA-VS-A958-01 X 100229146 100229146 C T ARL13A Silent p.N30N 0.14 TCGA-VS-A958-01 X 100276267 100276267 G A TRMT2B Nonsense_Mutation p.Q297* 0.28 TCGA-VS-A958-01 X 100646768 100646768 G A RPL36A-HNRNPH2 Silent p.Q56Q 0.21 TCGA-VS-A958-01 X 10096037 10096037 C G WWC3 Missense_Mutation p.Q706E 0.38 deleterious(0.01) possibly_damaging(0.77) TCGA-VS-A958-01 X 101409034 101409034 C T BEX5 Missense_Mutation p.M68I 0.32 tolerated(0.05) probably_damaging(0.977) TCGA-VS-A958-01 X 10203486 10203486 G A CLCN4 3'UTR 0.44 TCGA-VS-A958-01 X 102193172 102193172 C T RAB40AL 3'UTR 0.27 TCGA-VS-A958-01 X 106960217 106960217 G C TSC22D3 Intron 0.29 TCGA-VS-A958-01 X 107681437 107681437 C T COL4A6 Intron 0.21 TCGA-VS-A958-01 X 107976384 107976384 C T IRS4 Missense_Mutation p.R1064Q 0.18 deleterious(0.01) unknown(0) TCGA-VS-A958-01 X 109697356 109697356 G A RGAG1 Missense_Mutation p.D1171N 0.15 tolerated_low_confidence(0.12) benign(0.081) TCGA-VS-A958-01 X 110970585 110970585 C T ALG13 Missense_Mutation p.H668Y 0.22 tolerated(0.09) benign(0.133) TCGA-VS-A958-01 X 111000835 111000835 G C ALG13 Missense_Mutation p.W998S 0.30 deleterious(0) probably_damaging(0.994) TCGA-VS-A958-01 X 111698715 111698715 G C ZCCHC16 Missense_Mutation p.K253N 0.18 deleterious(0.01) benign(0.415) TCGA-VS-A958-01 X 114144371 114144371 G A HTR2C 3'UTR 0.25 TCGA-VS-A958-01 X 117543559 117543559 C T WDR44 Silent p.F547F 0.24 TCGA-VS-A958-01 X 118243094 118243094 C G KIAA1210 Missense_Mutation p.R241T 0.24 deleterious(0.02) benign(0.372) TCGA-VS-A958-01 X 122744791 122744791 C G THOC2 Missense_Mutation p.R1593T 0.18 deleterious_low_confidence(0.01) benign(0.032) TCGA-VS-A958-01 X 123518154 123518154 G A TENM1 Silent p.I2209I 0.12 TCGA-VS-A958-01 X 132161695 132161695 G A USP26 Missense_Mutation p.S185L 0.23 tolerated(0.11) benign(0.03) TCGA-VS-A958-01 X 135829701 135829701 C T ARHGEF6 Silent p.L100L 0.26 TCGA-VS-A958-01 X 138286262 138286262 C T FGF13 Missense_Mutation p.G3E 0.26 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-VS-A958-01 X 141290614 141290614 C A MAGEC2 3'UTR 0.29 TCGA-VS-A958-01 X 152226334 152226334 C A PNMA3 Silent p.R308R 0.22 TCGA-VS-A958-01 X 153008714 153008714 G A ABCD1 Silent p.V635V 0.24 TCGA-VS-A958-01 X 153051812 153051812 G C IDH3G Silent p.L339L 0.21 TCGA-VS-A958-01 X 153068038 153068038 C G PDZD4 3'UTR 0.23 TCGA-VS-A958-01 X 153284131 153284131 G C IRAK1 Silent p.L216L 0.19 TCGA-VS-A958-01 X 153292318 153292318 G A MECP2 3'Flank 0.24 TCGA-VS-A958-01 X 154005155 154005155 G A DKC1 3'UTR 0.17 TCGA-VS-A958-01 X 15574349 15574349 G A BMX 3'UTR 0.22 TCGA-VS-A958-01 X 15580038 15580038 G A ACE2 Missense_Mutation p.T803I 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VS-A958-01 X 18767978 18767978 G A PPEF1 Missense_Mutation p.D102N 0.27 deleterious(0.03) benign(0.048) TCGA-VS-A958-01 X 19025449 19025449 C T GPR64 Silent p.L531L 0.22 TCGA-VS-A958-01 X 31497149 31497149 C T DMD Silent p.L2873L 0.23 TCGA-VS-A958-01 X 3735805 3735805 G A RP11-706O15.1 3'UTR 0.26 TCGA-VS-A958-01 X 37699632 37699632 G A DYNLT3 3'UTR 0.27 TCGA-VS-A958-01 X 41078427 41078427 G A USP9X Missense_Mutation p.E2170K 0.22 deleterious(0.01) probably_damaging(0.952) TCGA-VS-A958-01 X 41201855 41201855 C G DDX3X Nonsense_Mutation p.S131* 0.33 TCGA-VS-A958-01 X 46913895 46913895 G A JADE3 Silent p.L436L 0.30 TCGA-VS-A958-01 X 47060745 47060745 A T UBA1 Missense_Mutation p.M220L 0.22 tolerated(0.18) benign(0.027) TCGA-VS-A958-01 X 47326967 47326967 C T ZNF41 5'UTR 0.28 TCGA-VS-A958-01 X 47497448 47497448 C T ELK1 Missense_Mutation p.R263K 0.24 tolerated(0.83) benign(0) TCGA-VS-A958-01 X 48760540 48760540 G A SLC35A2 3'UTR 0.22 TCGA-VS-A958-01 X 48931479 48931479 G A PRAF2 Silent p.L56L 0.28 TCGA-VS-A958-01 X 49049765 49049765 C G SYP Silent p.L193L 0.24 TCGA-VS-A958-01 X 53430595 53430595 C T SMC1A Missense_Mutation p.E775K 0.23 tolerated(0.51) benign(0.145) TCGA-VS-A958-01 X 53457948 53457948 C G RIBC1 3'UTR 0.16 TCGA-VS-A958-01 X 53579805 53579805 G T HUWE1 Silent p.V2848V 0.26 TCGA-VS-A958-01 X 54278033 54278033 G A WNK3 Missense_Mutation p.H819Y 0.26 deleterious(0.02) possibly_damaging(0.589) TCGA-VS-A958-01 X 55744657 55744657 G A RRAGB 5'UTR 0.25 TCGA-VS-A958-01 X 62570563 62570563 G A SPIN4 Nonsense_Mutation p.Q46* 0.24 TCGA-VS-A958-01 X 63407435 63407435 C A AMER1 3'UTR 0.19 TCGA-VS-A958-01 X 70390216 70390216 G C NLGN3 3'Flank 0.22 TCGA-VS-A958-01 X 71416705 71416705 G C PIN4 Missense_Mutation p.R88T 0.26 tolerated(0.06) possibly_damaging(0.651) TCGA-VS-A958-01 X 71416737 71416737 G C PIN4 Missense_Mutation p.D99H 0.25 deleterious(0) probably_damaging(0.996) TCGA-VS-A958-01 X 72347599 72347599 C T NAP1L6 Silent p.E41E 0.25 TCGA-VS-A958-01 X 76812955 76812955 C G ATRX Missense_Mutation p.K2222N 0.20 benign(0.056) TCGA-VS-A958-01 X 78217051 78217051 C T P2RY10 3'UTR 0.19 TCGA-VS-A958-01 X 79937973 79937973 C T BRWD3 Missense_Mutation p.G1463E 0.22 tolerated(0.47) benign(0.039) TCGA-VS-A958-01 X 82764245 82764245 G A POU3F4 Missense_Mutation p.A305T 0.23 deleterious(0.04) probably_damaging(1) TCGA-VS-A958-01 X 99549244 99549244 G C PCDH19 3'UTR 0.19 TCGA-VS-A959-01 10 102054875 102054875 G A PKD2L1 Silent p.F454F 0.21 TCGA-VS-A959-01 10 104574155 104574155 G A WBP1L 3'UTR 0.09 TCGA-VS-A959-01 10 116581859 116581859 A G FAM160B1 Missense_Mutation p.I8V 0.23 tolerated(0.19) benign(0.006) TCGA-VS-A959-01 10 119302784 119302784 C A EMX2 Missense_Mutation p.F2L 0.10 deleterious(0) probably_damaging(0.956) TCGA-VS-A959-01 10 124457734 124457734 G A C10orf120 Missense_Mutation p.R175W 0.13 deleterious(0) probably_damaging(0.985) TCGA-VS-A959-01 10 126518032 126518032 C T FAM175B Nonsense_Mutation p.Q217* 0.11 TCGA-VS-A959-01 10 134016175 134016175 G A DPYSL4 Missense_Mutation p.G436E 0.06 deleterious(0) probably_damaging(0.982) TCGA-VS-A959-01 10 134722106 134722106 C T TTC40 Silent p.S930S 0.13 TCGA-VS-A959-01 10 16553185 16553185 G A PTER Missense_Mutation p.R327K 0.06 tolerated(0.38) probably_damaging(0.951) TCGA-VS-A959-01 10 17750808 17750808 C T STAM Silent p.L415L 0.18 TCGA-VS-A959-01 10 22610410 22610410 G A BMI1 5'UTR 0.17 TCGA-VS-A959-01 10 22657457 22657457 C T SPAG6 Nonsense_Mutation p.R108* 0.16 TCGA-VS-A959-01 10 28420554 28420554 C T MPP7 Missense_Mutation p.E128K 0.12 tolerated(0.19) benign(0.002) TCGA-VS-A959-01 10 38344020 38344020 A G ZNF33A Missense_Mutation p.D323G 0.19 tolerated(0.31) benign(0.076) TCGA-VS-A959-01 10 50820131 50820131 G C SLC18A3 Missense_Mutation p.E449Q 0.12 tolerated(0.29) benign(0.008) TCGA-VS-A959-01 10 5436360 5436360 G A TUBAL3 Missense_Mutation p.S154L 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-VS-A959-01 10 70332921 70332921 C T TET1 Nonsense_Mutation p.R276* 0.20 TCGA-VS-A959-01 10 79793524 79793524 C T RPS24 5'UTR 0.23 TCGA-VS-A959-01 10 94397288 94397288 C T KIF11 Nonsense_Mutation p.Q716* 0.07 TCGA-VS-A959-01 10 97956801 97956801 G A BLNK Missense_Mutation p.R372W 0.16 deleterious(0) probably_damaging(0.999) TCGA-VS-A959-01 10 98281177 98281177 G A TM9SF3 3'UTR 0.15 TCGA-VS-A959-01 11 107535830 107535830 G A ELMOD1 Silent p.E304E 0.26 TCGA-VS-A959-01 11 17633832 17633832 G A OTOG Missense_Mutation p.V2095M 0.16 probably_damaging(0.999) TCGA-VS-A959-01 11 33080602 33080602 G A TCP11L1 Missense_Mutation p.E246K 0.08 deleterious(0) possibly_damaging(0.9) TCGA-VS-A959-01 11 46388082 46388082 C T DGKZ Silent p.L92L 0.10 TCGA-VS-A959-01 11 47381592 47381592 C T SPI1 Splice_Site p.X49_splice 0.09 TCGA-VS-A959-01 11 58275518 58275518 G C OR5B21 Missense_Mutation p.L21V 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.732) TCGA-VS-A959-01 11 61166218 61166218 G A TMEM216 3'UTR 0.07 TCGA-VS-A959-01 11 62502890 62502890 G A TTC9C Missense_Mutation p.R92Q 0.09 deleterious(0) possibly_damaging(0.904) TCGA-VS-A959-01 11 62562410 62562410 G A NXF1 Missense_Mutation p.S525L 0.10 deleterious(0.02) benign(0.306) TCGA-VS-A959-01 11 67044778 67044778 G A ADRBK1 Missense_Mutation p.R50Q 0.16 tolerated(0.16) benign(0.093) TCGA-VS-A959-01 11 67165918 67165918 G A PPP1CA 3'UTR 0.17 TCGA-VS-A959-01 11 75160082 75160082 G A GDPD5 Silent p.I218I 0.15 TCGA-VS-A959-01 11 75316879 75316879 C T MAP6 Missense_Mutation p.M430I 0.13 tolerated(0.21) benign(0.233) TCGA-VS-A959-01 11 85436783 85436783 C T SYTL2 Silent p.R239R 0.14 TCGA-VS-A959-01 11 93483557 93483557 C T C11orf54 Missense_Mutation p.S34F 0.16 deleterious(0) possibly_damaging(0.8) TCGA-VS-A959-01 12 102872394 102872394 G A IGF1 Intron 0.08 TCGA-VS-A959-01 12 110389102 110389102 G A GIT2 Missense_Mutation p.S421L 0.14 deleterious(0) probably_damaging(0.998) TCGA-VS-A959-01 12 123345715 123345715 G A HIP1R Silent p.L976L 0.12 TCGA-VS-A959-01 12 14650925 14650925 G A ATF7IP Missense_Mutation p.R1244Q 0.09 tolerated_low_confidence(0.08) unknown(0) TCGA-VS-A959-01 12 15035068 15035068 C T MGP 3'UTR 0.21 TCGA-VS-A959-01 12 15747955 15747955 G A PTPRO Missense_Mutation p.E1211K 0.21 deleterious(0) probably_damaging(0.994) TCGA-VS-A959-01 12 18435118 18435118 C G PIK3C2G Missense_Mutation p.Q35E 0.07 tolerated_low_confidence(0.19) benign(0.021) TCGA-VS-A959-01 12 32908175 32908175 C T YARS2 Missense_Mutation p.E212K 0.11 tolerated(0.1) benign(0.013) TCGA-VS-A959-01 12 49434553 49434553 G A KMT2D Missense_Mutation p.R2334W 0.21 probably_damaging(0.997) TCGA-VS-A959-01 12 51752958 51752958 A C GALNT6 Missense_Mutation p.I442M 0.10 tolerated(0.08) possibly_damaging(0.526) TCGA-VS-A959-01 12 53848599 53848599 G A PCBP2 Silent p.V5V 0.08 TCGA-VS-A959-01 12 70824564 70824564 C T KCNMB4 3'UTR 0.08 TCGA-VS-A959-01 12 7640238 7640238 C T CD163 Silent p.K589K 0.14 TCGA-VS-A959-01 12 76748902 76748902 G C OSBPL8 3'UTR 0.10 TCGA-VS-A959-01 12 78513721 78513721 C T NAV3 Nonsense_Mutation p.R1249* 0.11 TCGA-VS-A959-01 12 7922768 7922768 G C NANOGNB Missense_Mutation p.E98Q 0.08 tolerated(0.09) benign(0.023) TCGA-VS-A959-01 12 82147765 82147765 G A PPFIA2 Missense_Mutation p.S79L 0.14 deleterious(0.04) benign(0.343) TCGA-VS-A959-01 12 93968662 93968662 G A SOCS2 Missense_Mutation p.G102R 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A959-01 13 109779813 109779813 A G MYO16 Silent p.P1300P 0.08 TCGA-VS-A959-01 13 23910712 23910712 G A SACS Missense_Mutation p.L2435F 0.09 probably_damaging(0.997) TCGA-VS-A959-01 13 23913171 23913171 G - SACS Frame_Shift_Del p.P1615Lfs*8 0.17 TCGA-VS-A959-01 13 23913530 23913530 G A SACS Silent p.F1495F 0.12 TCGA-VS-A959-01 13 29233275 29233275 C T POMP 5'UTR 0.10 TCGA-VS-A959-01 13 32913286 32913286 C T BRCA2 Silent p.L1598L 0.09 TCGA-VS-A959-01 13 36700088 36700088 G A DCLK1 Nonsense_Mutation p.R63* 0.28 TCGA-VS-A959-01 13 50087264 50087264 G A PHF11 Missense_Mutation p.E96K 0.11 tolerated(0.45) benign(0.074) TCGA-VS-A959-01 13 52718994 52718994 G A NEK3 Silent p.L212L 0.09 TCGA-VS-A959-01 13 73649905 73649905 G A KLF5 Missense_Mutation p.E419K 0.38 deleterious(0) probably_damaging(0.982) TCGA-VS-A959-01 13 73649906 73649906 A G KLF5 Missense_Mutation p.E419G 0.39 deleterious(0) probably_damaging(0.988) TCGA-VS-A959-01 13 74420182 74420182 G A KLF12 Missense_Mutation p.S151F 0.16 deleterious(0) possibly_damaging(0.726) TCGA-VS-A959-01 13 75923403 75923403 G A TBC1D4 Silent p.F437F 0.12 TCGA-VS-A959-01 13 78337313 78337313 C T SLAIN1 Silent p.L413L 0.07 TCGA-VS-A959-01 13 99361996 99361996 C G SLC15A1 Missense_Mutation p.Q326H 0.09 deleterious(0) probably_damaging(0.968) TCGA-VS-A959-01 14 105412722 105412722 C A AHNAK2 Missense_Mutation p.K3022N 0.08 probably_damaging(0.991) TCGA-VS-A959-01 14 105455288 105455288 C G C14orf79 Silent p.L144L 0.11 TCGA-VS-A959-01 14 20389702 20389702 G A OR4K5 Missense_Mutation p.E313K 0.06 tolerated(0.28) benign(0.004) TCGA-VS-A959-01 14 23816682 23816682 C T SLC22A17 Silent p.G401G 0.11 TCGA-VS-A959-01 14 36986541 36986541 G A NKX2-1 Missense_Mutation p.S383L 0.16 deleterious_low_confidence(0.05) benign(0.128) TCGA-VS-A959-01 14 45535890 45535890 C T FAM179B Missense_Mutation p.R1504C 0.10 deleterious(0) probably_damaging(0.996) TCGA-VS-A959-01 14 51464725 51464725 C T TRIM9 Intron 0.30 TCGA-VS-A959-01 14 54418702 54418702 G A BMP4 Missense_Mutation p.P80L 0.20 deleterious(0) probably_damaging(0.999) TCGA-VS-A959-01 14 60212455 60212455 C T RTN1 Missense_Mutation p.G329E 0.09 tolerated(0.17) benign(0.016) TCGA-VS-A959-01 14 62211450 62211450 T C HIF1A Silent p.N731N 0.09 TCGA-VS-A959-01 14 64692896 64692896 G A SYNE2 3'UTR 0.25 TCGA-VS-A959-01 14 72055107 72055107 G A SIPA1L1 Missense_Mutation p.R173Q 0.14 deleterious(0) probably_damaging(0.978) TCGA-VS-A959-01 14 77948764 77948764 C T ISM2 Missense_Mutation p.E292K 0.10 tolerated(0.29) benign(0.032) TCGA-VS-A959-01 14 90871869 90871869 C T CALM1 3'UTR 0.13 TCGA-VS-A959-01 14 92563059 92563059 C T ATXN3 Missense_Mutation p.E50K 0.33 deleterious(0) possibly_damaging(0.862) TCGA-VS-A959-01 14 96811636 96811636 C G ATG2B Missense_Mutation p.D138H 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-VS-A959-01 15 23686412 23686412 C T GOLGA6L2 Missense_Mutation p.E404K 0.19 unknown(0) TCGA-VS-A959-01 15 23812826 23812826 C T MKRN3 3'UTR 0.16 TCGA-VS-A959-01 15 25302090 25302090 G A SNORD116-3 RNA 0.11 TCGA-VS-A959-01 15 29561244 29561244 G A NDNL2 Silent p.L222L 0.10 TCGA-VS-A959-01 15 30058731 30058731 C T TJP1 Silent p.K109K 0.07 TCGA-VS-A959-01 15 33359401 33359401 G A FMN1 Missense_Mutation p.R229C 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-VS-A959-01 15 40678619 40678619 G A KNSTRN Missense_Mutation p.D121N 0.08 tolerated(0.06) benign(0.197) TCGA-VS-A959-01 15 41187055 41187055 C T VPS18 Missense_Mutation p.S30L 0.07 tolerated(0.08) benign(0.032) TCGA-VS-A959-01 15 51217413 51217413 C T AP4E1 Missense_Mutation p.S180F 0.10 deleterious(0.01) probably_damaging(0.943) TCGA-VS-A959-01 15 59500267 59500267 G A LDHAL6B Silent p.Q376Q 0.09 TCGA-VS-A959-01 15 72102971 72102971 C A NR2E3 RNA 0.30 TCGA-VS-A959-01 15 79227336 79227336 G A CTSH Missense_Mutation p.S130L 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-VS-A959-01 15 85165408 85165408 C T ZSCAN2 3'UTR 0.09 TCGA-VS-A959-01 15 89740488 89740488 A G ABHD2 3'UTR 0.10 TCGA-VS-A959-01 15 91295036 91295036 G A BLM Silent p.K273K 0.18 TCGA-VS-A959-01 16 1828602 1828602 C T SPSB3 Silent p.S46S 0.18 TCGA-VS-A959-01 16 18869595 18869595 G A SMG1 Silent p.L1377L 0.12 TCGA-VS-A959-01 16 1889330 1889330 G A MEIOB Silent p.L382L 0.06 TCGA-VS-A959-01 16 2139495 2139495 G A PKD1 3'UTR 0.17 TCGA-VS-A959-01 16 22132370 22132370 T C VWA3A Missense_Mutation p.F400L 0.12 tolerated(0.29) benign(0.105) TCGA-VS-A959-01 16 24835527 24835527 G T TNRC6A 3'UTR 0.20 TCGA-VS-A959-01 16 2653705 2653705 G A PDPK1 3'Flank 0.07 TCGA-VS-A959-01 16 30543991 30543991 G A ZNF747 3'UTR 0.12 TCGA-VS-A959-01 16 31072718 31072718 C T ZNF668 Missense_Mutation p.E534K 0.19 tolerated(0.07) benign(0.001) TCGA-VS-A959-01 16 31473449 31473449 C T ARMC5 Intron 0.22 TCGA-VS-A959-01 16 3367660 3367660 C T ZNF75A Nonsense_Mutation p.Q228* 0.09 TCGA-VS-A959-01 16 3642697 3642697 G C SLX4 Intron 0.15 TCGA-VS-A959-01 16 4638333 4638333 G A C16orf96 Splice_Site p.X864_splice 0.18 TCGA-VS-A959-01 16 56509466 56509466 G A OGFOD1 Missense_Mutation p.E486K 0.07 deleterious(0) probably_damaging(1) TCGA-VS-A959-01 16 67314884 67314884 T C PLEKHG4 Missense_Mutation p.L232P 0.09 deleterious(0) probably_damaging(0.993) TCGA-VS-A959-01 16 67915899 67915899 G A EDC4 Missense_Mutation p.G1016E 0.21 tolerated(0.29) benign(0.014) TCGA-VS-A959-01 16 67984892 67984892 G A SLC12A4 Silent p.L459L 0.09 TCGA-VS-A959-01 16 76556051 76556051 C A CNTNAP4 Missense_Mutation p.N811K 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-VS-A959-01 16 83636170 83636170 G C CDH13 Missense_Mutation p.D405H 0.27 deleterious(0) probably_damaging(1) TCGA-VS-A959-01 16 84459354 84459354 C T ATP2C2 Silent p.L311L 0.21 TCGA-VS-A959-01 17 10412811 10412811 G C MYH1 Silent p.L526L 0.07 TCGA-VS-A959-01 17 15133107 15133107 G A PMP22 3'UTR 0.16 TCGA-VS-A959-01 17 17701822 17701822 G C RAI1 Missense_Mutation p.D1854H 0.11 deleterious(0.04) possibly_damaging(0.677) TCGA-VS-A959-01 17 26369874 26369874 T G NLK 5'UTR 0.31 TCGA-VS-A959-01 17 27062329 27062329 C G NEK8 Missense_Mutation p.I186M 0.11 tolerated(0.1) benign(0.253) TCGA-VS-A959-01 17 27083668 27083668 C T FAM222B 3'UTR 0.07 TCGA-VS-A959-01 17 27246250 27246250 G A PHF12 Missense_Mutation p.L294F 0.11 deleterious(0) probably_damaging(0.979) TCGA-VS-A959-01 17 27426747 27426747 C T MYO18A Missense_Mutation p.E1181K 0.10 deleterious(0) probably_damaging(0.998) TCGA-VS-A959-01 17 36927420 36927420 C T PIP4K2B Missense_Mutation p.E305K 0.08 tolerated(0.11) possibly_damaging(0.487) TCGA-VS-A959-01 17 37898826 37898826 C G GRB7 Missense_Mutation p.R78G 0.17 deleterious(0.04) benign(0.198) TCGA-VS-A959-01 17 38787892 38787892 C T SMARCE1 Silent p.K256K 0.09 TCGA-VS-A959-01 17 39116726 39116726 C G KRT39 Missense_Mutation p.E342Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-VS-A959-01 17 39739623 39739623 C T KRT14 Missense_Mutation p.V380M 0.09 deleterious(0.02) possibly_damaging(0.611) TCGA-VS-A959-01 17 40352334 40352334 G A STAT5B 3'UTR 0.07 TCGA-VS-A959-01 17 40647093 40647093 G A ATP6V0A1 Silent p.L459L 0.06 TCGA-VS-A959-01 17 40818901 40818901 C A TUBG2 3'UTR 0.25 TCGA-VS-A959-01 17 57771445 57771445 C T CLTC 3'UTR 0.12 TCGA-VS-A959-01 17 57918683 57918683 G A VMP1 3'Flank 0.08 TCGA-VS-A959-01 17 61910243 61910243 C T SMARCD2 3'UTR 0.21 TCGA-VS-A959-01 17 65900939 65900939 G A BPTF Missense_Mutation p.R932K 0.10 possibly_damaging(0.888) TCGA-VS-A959-01 17 7357632 7357632 C T CHRNB1 Silent p.L279L 0.18 TCGA-VS-A959-01 17 7365946 7365946 C T ZBTB4 Silent p.Q785Q 0.29 TCGA-VS-A959-01 17 77082384 77082384 C T ENGASE Nonsense_Mutation p.Q729* 0.12 TCGA-VS-A959-01 17 8024009 8024009 C A HES7 3'UTR 0.15 TCGA-VS-A959-01 18 30254420 30254420 G A KLHL14 3'UTR 0.25 TCGA-VS-A959-01 18 43846630 43846630 G A C18orf25 3'UTR 0.13 TCGA-VS-A959-01 18 48581234 48581234 C T SMAD4 Nonsense_Mutation p.Q180* 0.31 TCGA-VS-A959-01 18 67721404 67721404 G A RTTN Silent p.I1716I 0.12 TCGA-VS-A959-01 19 11446375 11446375 C T RAB3D Missense_Mutation p.A105T 0.24 tolerated(1) benign(0.001) TCGA-VS-A959-01 19 12015699 12015699 C T ZNF69 Missense_Mutation p.P149S 0.12 deleterious(0) probably_damaging(0.997) TCGA-VS-A959-01 19 17323207 17323207 C T MYO9B 3'UTR 0.10 TCGA-VS-A959-01 19 17516356 17516356 C T BST2 Missense_Mutation p.R10K 0.16 tolerated(1) benign(0.003) TCGA-VS-A959-01 19 17950393 17950393 C T JAK3 Missense_Mutation p.R445Q 0.19 tolerated(0.22) benign(0.007) TCGA-VS-A959-01 19 23159629 23159629 C T ZNF728 Silent p.K170K 0.06 TCGA-VS-A959-01 19 38655377 38655377 G A SIPA1L3 Missense_Mutation p.G1347S 0.21 tolerated(0.62) benign(0.065) TCGA-VS-A959-01 19 38698487 38698487 G A SIPA1L3 3'UTR 0.07 TCGA-VS-A959-01 19 38985200 38985200 G C RYR1 Missense_Mutation p.Q2161H 0.09 possibly_damaging(0.46) TCGA-VS-A959-01 19 39019297 39019297 G C RYR1 Missense_Mutation p.D3666H 0.09 benign(0.192) TCGA-VS-A959-01 19 39421811 39421811 G A MRPS12 5'UTR 0.08 TCGA-VS-A959-01 19 3969694 3969694 C T DAPK3 Missense_Mutation p.E14K 0.09 deleterious(0.02) benign(0.121) TCGA-VS-A959-01 19 39734538 39734538 G A IFNL3 Nonsense_Mutation p.Q140* 0.09 TCGA-VS-A959-01 19 43689018 43689018 C T PSG5 Missense_Mutation p.D116N 0.05 deleterious(0.03) possibly_damaging(0.864) TCGA-VS-A959-01 19 43689285 43689285 A G PSG5 Missense_Mutation p.F27L 0.05 tolerated(0.06) probably_damaging(0.992) TCGA-VS-A959-01 19 45397298 45397298 G A TOMM40 Silent p.G206G 0.37 TCGA-VS-A959-01 19 45991740 45991740 G A RTN2 Missense_Mutation p.R496W 0.11 deleterious(0.01) probably_damaging(0.948) TCGA-VS-A959-01 19 47505380 47505380 G A ARHGAP35 3'UTR 0.08 TCGA-VS-A959-01 19 49228160 49228160 C T RASIP1 Missense_Mutation p.E729K 0.09 tolerated(0.08) benign(0.062) TCGA-VS-A959-01 19 49351282 49351282 G A PLEKHA4 Nonsense_Mutation p.Q481* 0.07 TCGA-VS-A959-01 19 49638169 49638169 C G PPFIA3 Missense_Mutation p.S506C 0.07 deleterious(0.01) probably_damaging(0.974) TCGA-VS-A959-01 19 53269190 53269190 C A ZNF600 Nonsense_Mutation p.E607* 0.09 TCGA-VS-A959-01 19 53269969 53269969 C G ZNF600 Missense_Mutation p.R347T 0.13 tolerated(0.62) possibly_damaging(0.841) TCGA-VS-A959-01 19 53270840 53270840 C T ZNF600 Missense_Mutation p.E57K 0.12 tolerated(0.62) probably_damaging(0.98) TCGA-VS-A959-01 19 54080840 54080840 C T ZNF331 Silent p.L342L 0.28 TCGA-VS-A959-01 19 55344191 55344191 C T KIR3DL1 3'Flank 0.10 TCGA-VS-A959-01 19 56388502 56388502 C T NLRP4 Missense_Mutation p.T889M 0.08 tolerated(0.1) benign(0.011) TCGA-VS-A959-01 19 58513735 58513735 G T CTD-2368P22.1 Missense_Mutation p.R86L 0.17 deleterious_low_confidence(0.04) benign(0.433) TCGA-VS-A959-01 19 6754843 6754843 T A SH2D3A Missense_Mutation p.Q327L 0.20 deleterious(0.04) possibly_damaging(0.804) TCGA-VS-A959-01 19 7083730 7083730 C T ZNF557 Missense_Mutation p.T423M 0.26 tolerated(0.07) benign(0.001) TCGA-VS-A959-01 1 100548647 100548647 G A HIAT1 3'UTR 0.09 TCGA-VS-A959-01 1 10527322 10527322 C T DFFA Silent p.L122L 0.17 TCGA-VS-A959-01 1 11854043 11854043 G C MTHFR Nonsense_Mutation p.S484* 0.07 TCGA-VS-A959-01 1 149287696 149287696 G T RP11-403I13.8 RNA 0.13 TCGA-VS-A959-01 1 150479510 150479510 G A TARS2 Silent p.T709T 0.09 TCGA-VS-A959-01 1 150783953 150783953 C T ARNT 3'UTR 0.10 TCGA-VS-A959-01 1 155033905 155033905 C T ADAM15 Silent p.L764L 0.20 TCGA-VS-A959-01 1 155429623 155429623 C T ASH1L Missense_Mutation p.R1684Q 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.806) TCGA-VS-A959-01 1 158615104 158615104 G C SPTA1 Missense_Mutation p.I1356M 0.07 deleterious(0.03) benign(0.189) TCGA-VS-A959-01 1 167095521 167095521 G C DUSP27 Missense_Mutation p.E385Q 0.10 deleterious(0) benign(0.004) TCGA-VS-A959-01 1 173470146 173470146 G C SLC9C2 3'UTR 0.05 TCGA-VS-A959-01 1 173726217 173726217 G A KLHL20 Missense_Mutation p.G357E 0.07 tolerated(0.17) probably_damaging(1) TCGA-VS-A959-01 1 190067550 190067550 G C BRINP3 Missense_Mutation p.I633M 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-VS-A959-01 1 197071193 197071193 C T ASPM Silent p.R2396R 0.16 TCGA-VS-A959-01 1 200950154 200950154 C T KIF21B Missense_Mutation p.E1305K 0.11 deleterious(0) probably_damaging(0.997) TCGA-VS-A959-01 1 205687122 205687122 G A NUCKS1 3'UTR 0.08 TCGA-VS-A959-01 1 206637650 206637650 G A SRGAP2 3'UTR 0.07 TCGA-VS-A959-01 1 207241620 207241620 A G PFKFB2 Missense_Mutation p.Y318C 0.20 probably_damaging(1) TCGA-VS-A959-01 1 207679266 207679266 G A CR1 Missense_Mutation p.E47K 0.11 tolerated_low_confidence(0.14) benign(0.213) TCGA-VS-A959-01 1 21205829 21205829 C T EIF4G3 Missense_Mutation p.R820Q 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-VS-A959-01 1 22211832 22211832 C T HSPG2 Silent p.R397R 0.08 TCGA-VS-A959-01 1 227192737 227192737 C G CDC42BPA Missense_Mutation p.E1610Q 0.09 tolerated(0.49) benign(0.419) TCGA-VS-A959-01 1 235275155 235275155 C T TOMM20 3'UTR 0.10 TCGA-VS-A959-01 1 235530866 235530866 C T TBCE Intron 0.15 TCGA-VS-A959-01 1 237957257 237957257 G A RYR2 Missense_Mutation p.D4625N 0.06 probably_damaging(0.91) TCGA-VS-A959-01 1 32509074 32509074 T A KHDRBS1 3'UTR 0.08 TCGA-VS-A959-01 1 32509075 32509075 C G KHDRBS1 3'UTR 0.08 TCGA-VS-A959-01 1 36411455 36411455 G A AGO3 Missense_Mutation p.R61K 0.09 tolerated(0.57) benign(0.053) TCGA-VS-A959-01 1 44878352 44878352 G A RNF220 Missense_Mutation p.D195N 0.15 tolerated(0.06) probably_damaging(0.996) TCGA-VS-A959-01 1 44878392 44878392 G A RNF220 Missense_Mutation p.R208K 0.15 tolerated(0.1) benign(0.016) TCGA-VS-A959-01 1 66102375 66102375 G A LEPR Missense_Mutation p.E1059K 0.08 tolerated(0.08) benign(0.065) TCGA-VS-A959-01 1 71542481 71542481 T C ZRANB2 Missense_Mutation p.T100A 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A959-01 1 74808625 74808625 T C FPGT-TNNI3K Missense_Mutation p.V375A 0.08 tolerated(0.23) possibly_damaging(0.54) TCGA-VS-A959-01 1 75172021 75172021 G A CRYZ Missense_Mutation p.H317Y 0.06 tolerated(0.06) benign(0.001) TCGA-VS-A959-01 1 8075655 8075655 G A ERRFI1 Nonsense_Mutation p.Q9* 0.11 TCGA-VS-A959-01 1 93676368 93676368 G A CCDC18 Missense_Mutation p.E461K 0.05 tolerated(0.26) benign(0.025) TCGA-VS-A959-01 20 21493091 21493091 C T NKX2-2 Missense_Mutation p.D98N 0.12 tolerated(0.15) benign(0.034) TCGA-VS-A959-01 20 23666555 23666555 C T CST4 Silent p.V134V 0.10 TCGA-VS-A959-01 20 30421540 30421540 C T MYLK2 Silent p.S577S 0.11 TCGA-VS-A959-01 20 31671416 31671416 G A BPIFB4 Missense_Mutation p.R138Q 0.10 tolerated_low_confidence(0.23) benign(0.003) TCGA-VS-A959-01 20 32879282 32879282 C T AHCY Missense_Mutation p.M167I 0.14 deleterious_low_confidence(0) benign(0.228) TCGA-VS-A959-01 20 33298037 33298037 G A TP53INP2 Missense_Mutation p.E197K 0.15 deleterious(0.01) possibly_damaging(0.707) TCGA-VS-A959-01 20 40118552 40118552 C T CHD6 Missense_Mutation p.A516T 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A959-01 20 4202319 4202319 C T ADRA1D Missense_Mutation p.G524R 0.14 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-VS-A959-01 20 47273609 47273609 G A PREX1 Silent p.L698L 0.09 TCGA-VS-A959-01 20 5081571 5081571 C T TMEM230 Missense_Mutation p.D140N 0.13 tolerated(0.11) benign(0.022) TCGA-VS-A959-01 20 60962680 60962680 C G RPS21 Missense_Mutation p.R22G 0.10 deleterious(0) benign(0.34) TCGA-VS-A959-01 20 61444797 61444797 A G OGFR Silent p.A610A 0.30 TCGA-VS-A959-01 21 17196396 17196396 A T USP25 Missense_Mutation p.E373D 0.08 deleterious(0) possibly_damaging(0.523) TCGA-VS-A959-01 21 30324521 30324521 G A LTN1 Missense_Mutation p.S1148L 0.05 tolerated(0.34) benign(0.004) TCGA-VS-A959-01 21 30547058 30547058 C T MAP3K7CL Nonsense_Mutation p.Q192* 0.10 TCGA-VS-A959-01 21 31864007 31864007 C G KRTAP19-3 3'UTR 0.08 TCGA-VS-A959-01 21 37769753 37769753 C T CHAF1B Silent p.V174V 0.13 TCGA-VS-A959-01 21 40195121 40195121 C T ETS2 3'UTR 0.08 TCGA-VS-A959-01 21 44450241 44450241 G A PKNOX1 3'UTR 0.07 TCGA-VS-A959-01 21 45861685 45861685 C T TRPM2 Silent p.F1499F 0.07 TCGA-VS-A959-01 22 24456498 24456498 C T CABIN1 Missense_Mutation p.P504L 0.10 deleterious(0) probably_damaging(0.999) TCGA-VS-A959-01 22 37098706 37098706 T - CACNG2 5'UTR 0.23 TCGA-VS-A959-01 22 37771406 37771406 C T ELFN2 Missense_Mutation p.V57M 0.12 deleterious(0) probably_damaging(0.978) TCGA-VS-A959-01 22 42609532 42609532 C T TCF20 Missense_Mutation p.D594N 0.08 benign(0.022) TCGA-VS-A959-01 22 44681488 44681488 C T KIAA1644 Missense_Mutation p.R140Q 0.17 deleterious(0.01) benign(0.107) TCGA-VS-A959-01 2 136564766 136564766 C T LCT Missense_Mutation p.E1369K 0.10 deleterious(0.03) benign(0.04) TCGA-VS-A959-01 2 137872850 137872850 G A THSD7B Silent p.L452L 0.11 TCGA-VS-A959-01 2 139318405 139318405 G A SPOPL Missense_Mutation p.E249K 0.09 tolerated(0.1) benign(0.238) TCGA-VS-A959-01 2 141208198 141208198 G A LRP1B Silent p.F3332F 0.08 TCGA-VS-A959-01 2 160088514 160088514 A G TANC1 3'UTR 0.18 TCGA-VS-A959-01 2 16086529 16086529 G A MYCN 3'UTR 0.13 TCGA-VS-A959-01 2 167288850 167288850 G A SCN7A Missense_Mutation p.S857F 0.08 tolerated(0.06) benign(0.175) TCGA-VS-A959-01 2 167334005 167334005 C G SCN7A Missense_Mutation p.D68H 0.08 deleterious(0) probably_damaging(1) TCGA-VS-A959-01 2 170349469 170349469 G A BBS5 Missense_Mutation p.E158K 0.14 deleterious(0) probably_damaging(0.973) TCGA-VS-A959-01 2 172928488 172928488 G A METAP1D Missense_Mutation p.G83E 0.09 tolerated(0.21) benign(0.295) TCGA-VS-A959-01 2 173344366 173344366 C T ITGA6 Intron 0.14 TCGA-VS-A959-01 2 179454990 179454990 C T TTN Missense_Mutation p.V20488M 0.08 TCGA-VS-A959-01 2 179481234 179481234 C T TTN Missense_Mutation p.R16095Q 0.13 TCGA-VS-A959-01 2 179542399 179542399 C T TTN Missense_Mutation p.E11414K 0.12 TCGA-VS-A959-01 2 179563573 179563573 C T TTN Missense_Mutation p.E10251K 0.06 TCGA-VS-A959-01 2 186620988 186620988 C T FSIP2 Missense_Mutation p.T443I 0.08 benign(0.004) TCGA-VS-A959-01 2 189460631 189460631 G A GULP1 3'UTR 0.05 TCGA-VS-A959-01 2 200791828 200791828 T C C2orf69 3'UTR 0.17 TCGA-VS-A959-01 2 201284218 201284218 A C SPATS2L Silent p.T148T 0.07 TCGA-VS-A959-01 2 202446922 202446922 C T ALS2CR11 Missense_Mutation p.D179N 0.06 deleterious(0.02) probably_damaging(0.993) TCGA-VS-A959-01 2 203759314 203759314 G C WDR12 Missense_Mutation p.I215M 0.14 deleterious(0) probably_damaging(0.933) TCGA-VS-A959-01 2 21228964 21228964 A T APOB Silent p.S3592S 0.09 TCGA-VS-A959-01 2 213869694 213869694 G C IKZF2 3'UTR 0.06 TCGA-VS-A959-01 2 213871108 213871108 G A IKZF2 3'UTR 0.07 TCGA-VS-A959-01 2 218745671 218745671 C T TNS1 Missense_Mutation p.R335H 0.14 deleterious(0) probably_damaging(0.973) TCGA-VS-A959-01 2 227700777 227700777 T A RHBDD1 5'UTR 0.27 TCGA-VS-A959-01 2 234526593 234526593 A G UGT1A8 Silent p.S80S 0.12 TCGA-VS-A959-01 2 238402109 238402109 G A MLPH Missense_Mutation p.E14K 0.07 deleterious(0) probably_damaging(1) TCGA-VS-A959-01 2 239152847 239152847 G A PER2 3'UTR 0.09 TCGA-VS-A959-01 2 240500302 240500302 C T AC079612.1 Silent p.S61S 0.11 TCGA-VS-A959-01 2 27529326 27529326 G A TRIM54 Missense_Mutation p.A374T 0.10 tolerated_low_confidence(0.78) benign(0.006) TCGA-VS-A959-01 2 27804130 27804130 G A C2orf16 Missense_Mutation p.R1564K 0.09 tolerated(0.08) unknown(0) TCGA-VS-A959-01 2 28755007 28755007 C T PLB1 Silent p.I167I 0.06 TCGA-VS-A959-01 2 29295701 29295701 A C C2orf71 Missense_Mutation p.M476R 0.08 tolerated(0.58) possibly_damaging(0.735) TCGA-VS-A959-01 2 32092896 32092896 G C MEMO1 3'UTR 0.04 TCGA-VS-A959-01 2 32626398 32626398 C T BIRC6 Missense_Mutation p.A401V 0.21 probably_damaging(0.985) TCGA-VS-A959-01 2 32640146 32640146 G A BIRC6 Missense_Mutation p.R596K 0.10 benign(0.054) TCGA-VS-A959-01 2 37455570 37455570 G A CEBPZ Nonsense_Mutation p.Q256* 0.08 TCGA-VS-A959-01 2 61456690 61456690 C G USP34 Missense_Mutation p.E2398Q 0.11 tolerated(0.06) possibly_damaging(0.548) TCGA-VS-A959-01 2 70904965 70904965 C T ADD2 Silent p.P476P 0.10 TCGA-VS-A959-01 2 74652872 74652872 C T WDR54 3'UTR 0.29 TCGA-VS-A959-01 2 88327795 88327795 C T KRCC1 Silent p.L96L 0.09 TCGA-VS-A959-01 2 88411674 88411674 C T SMYD1 3'UTR 0.12 TCGA-VS-A959-01 3 10114988 10114988 C T FANCD2 Missense_Mutation p.S886L 0.11 tolerated(0.18) benign(0.02) TCGA-VS-A959-01 3 10116333 10116333 C T FANCD2 Silent p.I945I 0.10 TCGA-VS-A959-01 3 111343204 111343204 G A CD96 Missense_Mutation p.R441Q 0.05 tolerated(1) benign(0.001) TCGA-VS-A959-01 3 132764787 132764787 G A TMEM108 5'UTR 0.06 TCGA-VS-A959-01 3 133473394 133473394 G A TF Silent p.Q127Q 0.09 TCGA-VS-A959-01 3 138739163 138739163 G A PRR23B Missense_Mutation p.A114V 0.21 tolerated(0.4) possibly_damaging(0.752) TCGA-VS-A959-01 3 141932394 141932394 C T GK5 Silent p.Q97Q 0.08 TCGA-VS-A959-01 3 142778928 142778928 C T U2SURP 3'UTR 0.07 TCGA-VS-A959-01 3 147106011 147106011 G A ZIC4 3'UTR 0.15 TCGA-VS-A959-01 3 152885913 152885913 C T RAP2B 3'UTR 0.07 TCGA-VS-A959-01 3 164776959 164776959 G A SI Silent p.I425I 0.11 TCGA-VS-A959-01 3 178928079 178928079 G A PIK3CA Missense_Mutation p.E453K 0.18 tolerated(0.06) possibly_damaging(0.801) TCGA-VS-A959-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.10 deleterious(0.04) probably_damaging(0.96) TCGA-VS-A959-01 3 188202454 188202454 C G LPP Missense_Mutation p.P90A 0.06 tolerated(0.19) probably_damaging(0.997) TCGA-VS-A959-01 3 188202483 188202483 C G LPP Missense_Mutation p.F99L 0.08 tolerated(0.13) benign(0.265) TCGA-VS-A959-01 3 197431490 197431490 C T KIAA0226 Missense_Mutation p.S129N 0.11 deleterious(0) probably_damaging(1) TCGA-VS-A959-01 3 37284995 37284995 C T GOLGA4 5'UTR 0.09 TCGA-VS-A959-01 3 46009419 46009419 G A FYCO1 Silent p.L469L 0.20 TCGA-VS-A959-01 3 48916849 48916849 G C SLC25A20 Missense_Mutation p.S120C 0.15 deleterious(0) probably_damaging(0.992) TCGA-VS-A959-01 3 48936241 48936241 G A SLC25A20 5'UTR 0.10 TCGA-VS-A959-01 3 49728914 49728914 G A RNF123 Missense_Mutation p.E47K 0.15 tolerated_low_confidence(0.52) benign(0) TCGA-VS-A959-01 3 51352489 51352489 G A DOCK3 Missense_Mutation p.R1111Q 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-VS-A959-01 3 97868389 97868389 C G OR5H14 Missense_Mutation p.H54D 0.08 deleterious(0) benign(0.288) TCGA-VS-A959-01 4 119626803 119626803 G A METTL14 Missense_Mutation p.R298H 0.12 deleterious(0) probably_damaging(0.997) TCGA-VS-A959-01 4 119673968 119673968 C T SEC24D Silent p.V499V 0.15 TCGA-VS-A959-01 4 1208171 1208171 G A CTBP1 Missense_Mutation p.R285C 0.26 deleterious(0.02) probably_damaging(0.968) TCGA-VS-A959-01 4 126328220 126328220 C T FAT4 Silent p.V1831V 0.09 TCGA-VS-A959-01 4 154625335 154625335 C T TLR2 Missense_Mutation p.H426Y 0.19 tolerated(0.15) benign(0.238) TCGA-VS-A959-01 4 158257577 158257577 G A GRIA2 Missense_Mutation p.E508K 0.10 tolerated(0.17) possibly_damaging(0.869) TCGA-VS-A959-01 4 170038802 170038802 C T SH3RF1 Missense_Mutation p.G550E 0.22 tolerated(0.35) benign(0.005) TCGA-VS-A959-01 4 175896890 175896890 C A ADAM29 Missense_Mutation p.L72I 0.16 tolerated(0.4) benign(0.024) TCGA-VS-A959-01 4 20730408 20730408 T C KCNIP4 3'Flank 0.23 TCGA-VS-A959-01 4 46930570 46930570 G A GABRA4 Missense_Mutation p.S446F 0.10 deleterious_low_confidence(0.04) benign(0.049) TCGA-VS-A959-01 4 5627586 5627586 G A EVC2 Nonsense_Mutation p.Q646* 0.17 TCGA-VS-A959-01 4 62758540 62758540 C A LPHN3 Silent p.T481T 0.10 TCGA-VS-A959-01 4 88344034 88344034 C T NUDT9 5'UTR 0.13 TCGA-VS-A959-01 4 99978901 99978901 C T METAP1 Intron 0.16 TCGA-VS-A959-01 5 115319098 115319098 T C AQPEP Silent p.Y270Y 0.17 TCGA-VS-A959-01 5 126676272 126676272 G A MEGF10 Missense_Mutation p.R90H 0.06 deleterious(0) probably_damaging(0.982) TCGA-VS-A959-01 5 131915749 131915749 T C RAD50 Silent p.D249D 0.14 TCGA-VS-A959-01 5 135272289 135272289 G A FBXL21 5'Flank 0.07 TCGA-VS-A959-01 5 135286942 135286942 T A LECT2 Missense_Mutation p.I87F 0.23 deleterious(0) probably_damaging(0.932) TCGA-VS-A959-01 5 137727750 137727750 C T KDM3B Missense_Mutation p.S810L 0.13 deleterious(0) probably_damaging(0.992) TCGA-VS-A959-01 5 140209303 140209303 C T PCDHA6 Missense_Mutation p.P543S 0.08 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-VS-A959-01 5 140390965 140390965 C T PCDHAC1 3'UTR 0.14 TCGA-VS-A959-01 5 140591015 140591015 G A PCDHB12 3'UTR 0.09 TCGA-VS-A959-01 5 147902890 147902890 G A HTR4 Nonsense_Mutation p.Q125* 0.14 TCGA-VS-A959-01 5 149416345 149416345 C T HMGXB3 Silent p.F710F 0.13 TCGA-VS-A959-01 5 154397385 154397385 C G KIF4B 3'UTR 0.18 TCGA-VS-A959-01 5 167674342 167674342 G C TENM2 Missense_Mutation p.G2133A 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-VS-A959-01 5 21975238 21975238 C G CDH12 Missense_Mutation p.G163A 0.07 deleterious(0.01) benign(0.126) TCGA-VS-A959-01 5 21975459 21975459 C T CDH12 Silent p.V89V 0.08 TCGA-VS-A959-01 5 24487235 24487235 T A CDH10 3'UTR 0.06 TCGA-VS-A959-01 5 37231130 37231130 G A C5orf42 Silent p.I320I 0.10 TCGA-VS-A959-01 5 442536 442536 G A C5orf55 3'UTR 0.10 TCGA-VS-A959-01 5 453846 453846 G A EXOC3 Silent p.K242K 0.10 TCGA-VS-A959-01 5 45645347 45645347 G A HCN1 Silent p.L263L 0.12 TCGA-VS-A959-01 5 77335096 77335096 G A AP3B1 Silent p.V860V 0.11 TCGA-VS-A959-01 5 7827212 7827212 G A ADCY2 3'UTR 0.12 TCGA-VS-A959-01 5 83239308 83239308 A T EDIL3 Missense_Mutation p.I458N 0.06 deleterious(0) probably_damaging(0.999) TCGA-VS-A959-01 5 89968666 89968666 G A GPR98 Intron 0.27 TCGA-VS-A959-01 6 107474480 107474480 C G PDSS2 3'UTR 0.10 TCGA-VS-A959-01 6 123824942 123824942 C G TRDN Missense_Mutation p.E239Q 0.13 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VS-A959-01 6 131156077 131156077 G C SMLR1 Missense_Mutation p.Q102H 0.17 tolerated(0.19) benign(0.066) TCGA-VS-A959-01 6 146126316 146126316 G A FBXO30 Missense_Mutation p.S409L 0.12 deleterious(0) possibly_damaging(0.721) TCGA-VS-A959-01 6 159046192 159046192 C T TMEM181 Silent p.F474F 0.25 TCGA-VS-A959-01 6 161518198 161518198 G A MAP3K4 Missense_Mutation p.E1172K 0.24 deleterious(0.05) benign(0.371) TCGA-VS-A959-01 6 167446120 167446120 G A FGFR1OP Missense_Mutation p.D340N 0.06 deleterious(0) probably_damaging(0.979) TCGA-VS-A959-01 6 18161560 18161560 G A KDM1B Silent p.A30A 0.27 TCGA-VS-A959-01 6 27101034 27101034 G A HIST1H2AG Missense_Mutation p.E62K 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.816) TCGA-VS-A959-01 6 27782988 27782988 C T HIST1H2BM Missense_Mutation p.S56F 0.20 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-VS-A959-01 6 27806020 27806020 C G HIST1H2AK Missense_Mutation p.R33P 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.891) TCGA-VS-A959-01 6 29054938 29054938 C T OR2B3 Missense_Mutation p.V30I 0.07 tolerated(0.37) benign(0.005) TCGA-VS-A959-01 6 29556579 29556579 C T OR2H2 Silent p.L286L 0.07 TCGA-VS-A959-01 6 30128282 30128282 G A TRIM10 Silent p.C118C 0.26 TCGA-VS-A959-01 6 34823440 34823440 C T UHRF1BP1 Silent p.F360F 0.07 TCGA-VS-A959-01 6 35047625 35047625 C T ANKS1A Missense_Mutation p.R822C 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A959-01 6 38718350 38718350 C T DNAH8 Silent p.L247L 0.05 TCGA-VS-A959-01 6 6318801 6318801 G A F13A1 Nonsense_Mutation p.Q33* 0.05 TCGA-VS-A959-01 6 76124593 76124593 G A FILIP1 Silent p.L32L 0.19 TCGA-VS-A959-01 6 88854998 88854998 T G CNR1 5'UTR 0.26 TCGA-VS-A959-01 6 93952944 93952944 G A EPHA7 3'UTR 0.11 TCGA-VS-A959-01 6 9896978 9896978 C T OFCC1 Intron 0.21 TCGA-VS-A959-01 7 117407120 117407120 C T CTTNBP2 Silent p.E963E 0.15 TCGA-VS-A959-01 7 122342421 122342421 G A RNF148 Silent p.I128I 0.20 TCGA-VS-A959-01 7 128645123 128645123 C T TNPO3 Missense_Mutation p.D215N 0.07 tolerated(0.32) benign(0.055) TCGA-VS-A959-01 7 149518745 149518745 G A SSPO RNA 0.22 TCGA-VS-A959-01 7 150873237 150873237 G A ASB10 Missense_Mutation p.R456C 0.14 tolerated(0.06) probably_damaging(0.987) TCGA-VS-A959-01 7 15405208 15405208 C G AGMO Missense_Mutation p.L398F 0.07 tolerated(0.26) benign(0.019) TCGA-VS-A959-01 7 17379369 17379369 G A AHR Silent p.Q640Q 0.10 TCGA-VS-A959-01 7 26229839 26229839 T C HNRNPA2B1 3'UTR 0.15 TCGA-VS-A959-01 7 26678848 26678848 G C C7orf71 Missense_Mutation p.E29Q 0.10 tolerated_low_confidence(0.2) possibly_damaging(0.607) TCGA-VS-A959-01 7 31918653 31918653 G C PDE1C Missense_Mutation p.F187L 0.10 deleterious(0.02) possibly_damaging(0.897) TCGA-VS-A959-01 7 36616237 36616237 G A AOAH Missense_Mutation p.R322C 0.21 deleterious(0) probably_damaging(0.982) TCGA-VS-A959-01 7 38309123 38309123 G C TRGJ1 Silent p.L7L 0.09 TCGA-VS-A959-01 7 38423468 38423468 G A AMPH 3'UTR 0.11 TCGA-VS-A959-01 7 47884641 47884641 C T PKD1L1 Missense_Mutation p.R1730K 0.15 tolerated(0.05) possibly_damaging(0.871) TCGA-VS-A959-01 7 5434181 5434181 G A TNRC18 Missense_Mutation p.S78L 0.09 benign(0.005) TCGA-VS-A959-01 7 5567507 5567507 C T ACTB Missense_Mutation p.E334K 0.15 deleterious_low_confidence(0.03) benign(0.004) TCGA-VS-A959-01 7 55863599 55863599 G A SEPT14 3'UTR 0.06 TCGA-VS-A959-01 7 6731984 6731984 C T ZNF12 Missense_Mutation p.E197K 0.07 tolerated(1) benign(0.001) TCGA-VS-A959-01 7 74303844 74303844 T A STAG3L2 RNA 0.36 TCGA-VS-A959-01 7 82764906 82764906 G A PCLO Missense_Mutation p.P654S 0.15 unknown(0) TCGA-VS-A959-01 7 97823204 97823204 G A LMTK2 Missense_Mutation p.E1143K 0.21 tolerated(0.42) benign(0.052) TCGA-VS-A959-01 8 14181650 14181650 G A SGCZ Silent p.L100L 0.10 TCGA-VS-A959-01 8 22102474 22102474 C T POLR3D 5'Flank 0.09 TCGA-VS-A959-01 8 25285692 25285692 C T KCTD9 3'UTR 0.06 TCGA-VS-A959-01 8 67771988 67771988 C G SGK3 3'UTR 0.05 TCGA-VS-A959-01 8 86057742 86057742 T C LRRCC1 Missense_Mutation p.M1032T 0.18 deleterious(0) benign(0.063) TCGA-VS-A959-01 8 95953141 95953144 ACAA - TP53INP1 Frame_Shift_Del p.F9Wfs*28 0.22 TCGA-VS-A959-01 9 100353597 100353597 G A TMOD1 Missense_Mutation p.E299K 0.06 deleterious(0.01) benign(0.097) TCGA-VS-A959-01 9 108399091 108399091 G A FKTN 3'UTR 0.09 TCGA-VS-A959-01 9 116812609 116812609 C T ZNF618 3'UTR 0.08 TCGA-VS-A959-01 9 125941403 125941403 G C STRBP Missense_Mutation p.S36C 0.12 deleterious(0) probably_damaging(0.999) TCGA-VS-A959-01 9 127781118 127781118 G A SCAI Missense_Mutation p.S297F 0.07 deleterious(0.02) benign(0.017) TCGA-VS-A959-01 9 139998227 139998227 G A MAN1B1 Intron 0.09 TCGA-VS-A959-01 9 14801701 14801701 G A FREM1 Missense_Mutation p.H1215Y 0.08 tolerated(0.39) benign(0.002) TCGA-VS-A959-01 9 35062104 35062104 G A VCP Missense_Mutation p.S326L 0.20 deleterious(0.01) possibly_damaging(0.589) TCGA-VS-A959-01 9 36217530 36217530 G A GNE Silent p.L698L 0.10 TCGA-VS-A959-01 9 36223475 36223475 G C GNE Missense_Mutation p.Q467E 0.14 tolerated_low_confidence(0.28) benign(0.004) TCGA-VS-A959-01 9 79120508 79120508 C T GCNT1 3'UTR 0.12 TCGA-VS-A959-01 9 84609207 84609207 C A SPATA31D1 Silent p.V1274V 0.22 TCGA-VS-A959-01 9 96439981 96439981 C T PHF2 3'UTR 0.09 TCGA-VS-A959-01 9 99285982 99285982 C T CDC14B Silent p.L324L 0.20 TCGA-VS-A959-01 X 105855377 105855377 G A CXorf57 Missense_Mutation p.E23K 0.09 deleterious(0.02) benign(0.321) TCGA-VS-A959-01 X 105855379 105855379 G A CXorf57 Silent p.E23E 0.09 TCGA-VS-A959-01 X 113818847 113818847 G T HTR2C 5'UTR 0.18 TCGA-VS-A959-01 X 119388553 119388553 C T ZBTB33 Missense_Mutation p.S428L 0.06 deleterious(0) probably_damaging(0.996) TCGA-VS-A959-01 X 123556288 123556288 C T TENM1 Silent p.A1435A 0.24 TCGA-VS-A959-01 X 134033376 134033376 C T MOSPD1 Missense_Mutation p.D30N 0.07 deleterious(0.01) possibly_damaging(0.566) TCGA-VS-A959-01 X 148037919 148037919 C T AFF2 Missense_Mutation p.P782S 0.10 deleterious(0.05) benign(0.002) TCGA-VS-A959-01 X 149631068 149631068 G A MAMLD1 Intron 0.16 TCGA-VS-A959-01 X 151909335 151909335 G A CSAG1 3'UTR 0.22 TCGA-VS-A959-01 X 3573308 3573308 C T PRKX Missense_Mutation p.E161K 0.11 tolerated(0.06) possibly_damaging(0.829) TCGA-VS-A959-01 X 65417658 65417658 C T HEPH Silent p.P599P 0.12 TCGA-VS-A959-01 X 70354605 70354605 C T MED12 Silent p.I1590I 0.09 TCGA-VS-A959-01 X 85212929 85212929 C T CHM Missense_Mutation p.E291K 0.08 deleterious(0) probably_damaging(0.997) TCGA-VS-A9U5-01 10 129877960 129877960 G A PTPRE Splice_Site p.X676_splice 0.17 TCGA-VS-A9U5-01 10 133931010 133931010 G A JAKMIP3 Missense_Mutation p.V189M 0.35 deleterious(0.04) possibly_damaging(0.742) TCGA-VS-A9U5-01 10 6063525 6063525 C T IL2RA Missense_Mutation p.V167I 0.35 tolerated(0.59) benign(0.011) TCGA-VS-A9U5-01 11 133805556 133805556 C A IGSF9B Missense_Mutation p.S308I 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-VS-A9U5-01 11 1769133 1769133 G T RP11-295K3.1 Missense_Mutation p.P301T 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VS-A9U5-01 11 2436671 2436671 C T TRPM5 Missense_Mutation p.A387T 0.19 deleterious(0) probably_damaging(0.943) TCGA-VS-A9U5-01 11 32697144 32697144 T C CCDC73 Silent p.K204K 0.22 TCGA-VS-A9U5-01 11 35232976 35232976 A C CD44 Missense_Mutation p.N597T 0.07 deleterious(0.01) benign(0.334) TCGA-VS-A9U5-01 11 57512950 57512950 G C BTBD18 Silent p.L265L 0.14 TCGA-VS-A9U5-01 11 66327459 66327459 C A CTSF 3'Flank 0.15 TCGA-VS-A9U5-01 11 679787 679787 T C DEAF1 Missense_Mutation p.T343A 0.34 tolerated(0.12) benign(0.021) TCGA-VS-A9U5-01 11 69467977 69467977 C G CCND1 3'UTR 0.30 TCGA-VS-A9U5-01 11 95825419 95825419 C T MAML2 Silent p.Q592Q 0.05 TCGA-VS-A9U5-01 12 14775062 14775062 G A GUCY2C Silent p.Y826Y 0.07 TCGA-VS-A9U5-01 12 46591556 46591556 G C SLC38A1 Missense_Mutation p.L437V 0.10 deleterious(0) possibly_damaging(0.77) TCGA-VS-A9U5-01 12 50870797 50870798 - A LARP4 3'UTR 0.26 TCGA-VS-A9U5-01 12 56557131 56557131 T C SMARCC2 3'UTR 0.38 TCGA-VS-A9U5-01 12 7842893 7842893 T C GDF3 Missense_Mutation p.R226G 0.11 tolerated(0.26) possibly_damaging(0.838) TCGA-VS-A9U5-01 12 96588323 96588323 A G ELK3 5'UTR 0.15 TCGA-VS-A9U5-01 13 100543599 100543599 A T CLYBL Missense_Mutation p.I319F 0.09 deleterious(0) probably_damaging(0.996) TCGA-VS-A9U5-01 13 103296938 103296938 G A TPP2 Missense_Mutation p.R736H 0.17 deleterious(0) possibly_damaging(0.875) TCGA-VS-A9U5-01 13 107145720 107145720 C T EFNB2 Missense_Mutation p.E224K 0.42 tolerated(1) benign(0.02) TCGA-VS-A9U5-01 14 105356009 105356009 C T CEP170B Silent p.P1264P 0.21 TCGA-VS-A9U5-01 14 23743590 23743590 C A HOMEZ 3'UTR 0.10 TCGA-VS-A9U5-01 14 24002902 24002902 C T ZFHX2 Missense_Mutation p.G545R 0.40 probably_damaging(0.99) TCGA-VS-A9U5-01 14 24435512 24435512 C A DHRS4 Silent p.V184V 0.06 TCGA-VS-A9U5-01 14 89878482 89878482 G A FOXN3 Silent p.C113C 0.69 TCGA-VS-A9U5-01 14 93650536 93650536 G A MOAP1 Missense_Mutation p.R18W 0.21 deleterious(0) probably_damaging(0.986) TCGA-VS-A9U5-01 15 23889888 23889888 G A MAGEL2 Missense_Mutation p.P398L 0.09 tolerated(0.21) benign(0.001) TCGA-VS-A9U5-01 15 49426283 49426283 C G COPS2 Missense_Mutation p.L253F 0.11 deleterious(0) possibly_damaging(0.823) TCGA-VS-A9U5-01 16 22558265 22558265 G - RP11-368J21.3 RNA 0.23 TCGA-VS-A9U5-01 16 28847379 28847379 G A ATXN2L Silent p.Q1007Q 0.14 TCGA-VS-A9U5-01 16 32265024 32265024 C A TP53TG3D Missense_Mutation p.A117E 0.05 deleterious_low_confidence(0.04) benign(0.002) TCGA-VS-A9U5-01 16 84328610 84328610 C T WFDC1 Silent p.C11C 0.40 TCGA-VS-A9U5-01 17 11648324 11648324 G A DNAH9 Missense_Mutation p.D2108N 0.13 benign(0.012) TCGA-VS-A9U5-01 17 1564998 1564998 C T PRPF8 Missense_Mutation p.R1370H 0.28 deleterious(0) possibly_damaging(0.901) TCGA-VS-A9U5-01 17 20209351 20209351 T C SPECC1 Silent p.L1025L 0.09 TCGA-VS-A9U5-01 17 45518093 45518093 G C EFCAB13 3'UTR 0.17 TCGA-VS-A9U5-01 17 47677568 47677568 G A SPOP 3'UTR 0.15 TCGA-VS-A9U5-01 17 56619077 56619077 A C C17orf47 3'UTR 0.26 TCGA-VS-A9U5-01 17 59534959 59534959 C T TBX4 Missense_Mutation p.A83V 0.32 tolerated(0.88) probably_damaging(0.995) TCGA-VS-A9U5-01 17 61907723 61907723 G A PSMC5 Missense_Mutation p.M138I 0.12 deleterious(0.02) benign(0.027) TCGA-VS-A9U5-01 17 79428655 79428655 C T RP11-1055B8.7 Silent p.G2322G 0.04 TCGA-VS-A9U5-01 18 47329223 47329223 C G ACAA2 Missense_Mutation p.G6A 0.09 tolerated(0.17) benign(0.158) TCGA-VS-A9U5-01 18 55816645 55816645 C T NEDD4L Intron 0.13 TCGA-VS-A9U5-01 18 59483080 59483080 C T RNF152 3'UTR 0.38 TCGA-VS-A9U5-01 18 60245225 60245225 C T ZCCHC2 3'UTR 0.29 TCGA-VS-A9U5-01 18 6977852 6977852 G A LAMA1 Silent p.D2073D 0.15 TCGA-VS-A9U5-01 19 12090599 12090599 G C ZNF763 3'UTR 0.05 TCGA-VS-A9U5-01 19 13923884 13923884 C A ZSWIM4 Silent p.L362L 0.12 TCGA-VS-A9U5-01 19 16980761 16980761 T A SIN3B Missense_Mutation p.I798N 0.28 deleterious(0) probably_damaging(0.954) TCGA-VS-A9U5-01 19 1980573 1980573 C T CSNK1G2 3'UTR 0.28 TCGA-VS-A9U5-01 19 41448011 41448011 C T AC092071.1 5'Flank 0.17 TCGA-VS-A9U5-01 19 53741089 53741089 G C ZNF677 Silent p.G297G 0.09 TCGA-VS-A9U5-01 19 5456201 5456201 C T ZNRF4 Silent p.H233H 0.17 TCGA-VS-A9U5-01 19 57066698 57066698 G A ZFP28 Silent p.T848T 0.09 TCGA-VS-A9U5-01 19 57773935 57773935 T G CTC-444N24.8 RNA 0.08 TCGA-VS-A9U5-01 19 58258455 58258455 C G ZNF776 Missense_Mutation p.A10G 0.04 tolerated(0.12) benign(0.225) TCGA-VS-A9U5-01 19 9010711 9010711 G A MUC16 Missense_Mutation p.P12984S 0.36 probably_damaging(0.956) TCGA-VS-A9U5-01 19 9046880 9046880 G T MUC16 Missense_Mutation p.T11584N 0.53 benign(0.02) TCGA-VS-A9U5-01 1 107683660 107683660 T G NTNG1 5'UTR 0.15 TCGA-VS-A9U5-01 1 108507470 108507470 C T VAV3 Missense_Mutation p.A8T 0.26 tolerated(0.26) possibly_damaging(0.522) TCGA-VS-A9U5-01 1 152287231 152287231 G C FLG Intron 0.20 TCGA-VS-A9U5-01 1 173726216 173726216 G C KLHL20 Missense_Mutation p.G357R 0.08 tolerated(0.25) probably_damaging(1) TCGA-VS-A9U5-01 1 184597940 184597940 T C C1orf21 3'UTR 0.39 TCGA-VS-A9U5-01 1 205039631 205039631 C A CNTN2 Missense_Mutation p.Q837K 0.09 tolerated(0.31) benign(0.217) TCGA-VS-A9U5-01 1 208206710 208206710 C T PLXNA2 Missense_Mutation p.S1670N 0.11 tolerated(0.35) probably_damaging(0.966) TCGA-VS-A9U5-01 1 210416273 210416273 A G SERTAD4 3'UTR 0.36 TCGA-VS-A9U5-01 1 218509661 218509661 G C RRP15 3'UTR 0.45 TCGA-VS-A9U5-01 1 247615183 247615183 G A OR2B11 Silent p.V34V 0.12 TCGA-VS-A9U5-01 1 25611200 25611200 C T RHD Silent p.D95D 0.24 TCGA-VS-A9U5-01 1 26504038 26504038 C G CNKSR1 5'UTR 0.26 TCGA-VS-A9U5-01 1 47040532 47040532 C T MKNK1 Intron 0.23 TCGA-VS-A9U5-01 1 52769529 52769529 C T ZFYVE9 Nonsense_Mutation p.Q1124* 0.10 TCGA-VS-A9U5-01 1 53527962 53527962 C G PODN Missense_Mutation p.S24W 0.19 deleterious_low_confidence(0) benign(0.206) TCGA-VS-A9U5-01 20 16292991 16292991 T A KIF16B Missense_Mutation p.S447C 0.11 tolerated(0.07) benign(0.018) TCGA-VS-A9U5-01 20 19702648 19702648 G T SLC24A3 3'UTR 0.46 TCGA-VS-A9U5-01 20 40045948 40045948 T C CHD6 Missense_Mutation p.T2057A 0.12 tolerated(0.92) benign(0.001) TCGA-VS-A9U5-01 20 62196537 62196537 G A HELZ2 Missense_Mutation p.P1213L 0.30 tolerated(0.09) possibly_damaging(0.9) TCGA-VS-A9U5-01 20 742232 742232 G A SLC52A3 Intron 0.14 TCGA-VS-A9U5-01 22 17288971 17288971 G A XKR3 Intron 0.12 TCGA-VS-A9U5-01 22 31850250 31850250 C G EIF4ENIF1 Missense_Mutation p.E464D 0.05 tolerated(0.07) possibly_damaging(0.715) TCGA-VS-A9U5-01 22 40721679 40721679 G A TNRC6B 3'UTR 0.36 TCGA-VS-A9U5-01 22 46758837 46758837 G A CELSR1 3'UTR 0.17 TCGA-VS-A9U5-01 2 130953799 130953799 T G TUBA3E Missense_Mutation p.N50T 0.39 tolerated_low_confidence(0.17) benign(0.003) TCGA-VS-A9U5-01 2 133402824 133402824 G C GPR39 Missense_Mutation p.S336T 0.17 deleterious(0) probably_damaging(0.996) TCGA-VS-A9U5-01 2 178990837 178990837 G A RBM45 Silent p.V453V 0.15 TCGA-VS-A9U5-01 2 186629264 186629264 C G FSIP2 Silent p.T550T 0.12 TCGA-VS-A9U5-01 2 189868993 189868993 G A COL3A1 Missense_Mutation p.G945D 0.33 probably_damaging(0.998) TCGA-VS-A9U5-01 2 209353753 209353753 A - PTH2R Frame_Shift_Del p.T365Hfs*6 0.14 TCGA-VS-A9U5-01 2 223163395 223163395 C T PAX3 5'UTR 0.06 TCGA-VS-A9U5-01 2 26717917 26717917 G A OTOF Missense_Mutation p.R264W 0.15 deleterious(0) probably_damaging(1) TCGA-VS-A9U5-01 2 74756397 74756397 C T AUP1 Silent p.R67R 0.34 TCGA-VS-A9U5-01 3 101284373 101284373 A C TRMT10C Missense_Mutation p.I250L 0.09 tolerated(0.31) benign(0.005) TCGA-VS-A9U5-01 3 148768150 148768150 G A HLTF Nonsense_Mutation p.Q496* 0.05 TCGA-VS-A9U5-01 3 175345097 175345097 G A NAALADL2 Missense_Mutation p.E607K 0.06 deleterious(0.05) probably_damaging(1) TCGA-VS-A9U5-01 3 185329443 185329443 C T SENP2 Nonsense_Mutation p.Q243* 0.08 TCGA-VS-A9U5-01 3 97868335 97868335 C G OR5H14 Missense_Mutation p.L36V 0.12 tolerated(0.11) benign(0.057) TCGA-VS-A9U5-01 3 97868395 97868395 C T OR5H14 Missense_Mutation p.H56Y 0.16 deleterious(0) probably_damaging(0.982) TCGA-VS-A9U5-01 4 10076624 10076624 C T WDR1 3'UTR 0.25 TCGA-VS-A9U5-01 5 10973694 10973694 G A CTNND2 Silent p.S1183S 0.12 TCGA-VS-A9U5-01 5 11384966 11384966 G A CTNND2 Missense_Mutation p.R330C 0.09 tolerated(0.08) possibly_damaging(0.608) TCGA-VS-A9U5-01 5 138860375 138860375 C T TMEM173 Missense_Mutation p.E174K 0.40 tolerated(0.92) benign(0.04) TCGA-VS-A9U5-01 5 140237517 140237517 C T PCDHA10 Silent p.G628G 0.25 TCGA-VS-A9U5-01 5 140562945 140562945 G A PCDHB16 Missense_Mutation p.G271S 0.28 tolerated_low_confidence(0.6) benign(0.001) TCGA-VS-A9U5-01 5 155935615 155935615 G A SGCD Missense_Mutation p.G66E 0.07 deleterious(0) probably_damaging(1) TCGA-VS-A9U5-01 5 162894715 162894715 T C HMMR Silent p.S78S 0.23 TCGA-VS-A9U5-01 5 168093539 168093539 C T SLIT3 Missense_Mutation p.V1498I 0.18 tolerated(0.13) benign(0.009) TCGA-VS-A9U5-01 5 76932977 76932977 C A OTP Missense_Mutation p.G39V 0.42 tolerated_low_confidence(0.07) benign(0.024) TCGA-VS-A9U5-01 6 121768284 121768284 C T GJA1 Silent p.F97F 0.39 TCGA-VS-A9U5-01 6 2623093 2623093 G A C6orf195 3'UTR 0.08 TCGA-VS-A9U5-01 6 27879715 27879715 C T OR2B2 Missense_Mutation p.R128Q 0.40 tolerated(0.25) benign(0.014) TCGA-VS-A9U5-01 6 33255475 33255475 C T WDR46 Missense_Mutation p.R215H 0.08 tolerated(0.07) benign(0.013) TCGA-VS-A9U5-01 6 90604670 90604670 C T GJA10 Silent p.I161I 0.29 TCGA-VS-A9U5-01 7 128587818 128587818 C T IRF5 Missense_Mutation p.R275W 0.12 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U5-01 7 131865456 131865456 G A PLXNA4 Silent p.N1176N 0.12 TCGA-VS-A9U5-01 7 142997062 142997062 G A CASP2 Missense_Mutation p.R265Q 0.18 tolerated(0.28) benign(0.022) TCGA-VS-A9U5-01 7 21551809 21551809 G C SP4 3'UTR 0.27 TCGA-VS-A9U5-01 7 27868362 27868362 G A TAX1BP1 Missense_Mutation p.E762K 0.09 tolerated(0.07) benign(0.096) TCGA-VS-A9U5-01 7 29983750 29983750 G A SCRN1 Silent p.V149V 0.08 TCGA-VS-A9U5-01 7 37927933 37927933 C T NME8 Silent p.S434S 0.07 TCGA-VS-A9U5-01 7 38299634 38299634 G A TRGC1 3'UTR 0.22 TCGA-VS-A9U5-01 7 5662456 5662456 C T RNF216 3'UTR 0.18 TCGA-VS-A9U5-01 7 73483673 73483673 C A ELN 3'UTR 0.14 TCGA-VS-A9U5-01 8 11607742 11607742 C T GATA4 Silent p.H302H 0.16 TCGA-VS-A9U5-01 8 144377966 144377966 C G ZNF696 Missense_Mutation p.Q41E 0.15 tolerated_low_confidence(0.09) benign(0.042) TCGA-VS-A9U5-01 8 17916970 17916970 G T ASAH1 Silent p.L323L 0.21 TCGA-VS-A9U5-01 8 21769472 21769472 C T DOK2 Missense_Mutation p.E125K 0.19 tolerated(0.61) benign(0.001) TCGA-VS-A9U5-01 8 3245041 3245041 C T CSMD1 Nonsense_Mutation p.W919* 0.71 TCGA-VS-A9U5-01 8 37823658 37823658 G A ADRB3 Silent p.C110C 0.31 TCGA-VS-A9U5-01 8 67546422 67546422 G T VCPIP1 3'UTR 0.24 TCGA-VS-A9U5-01 8 88885837 88885837 G A DCAF4L2 Silent p.Y121Y 0.21 TCGA-VS-A9U5-01 9 34371120 34371120 C T KIAA1161 Missense_Mutation p.A574T 0.24 tolerated(1) benign(0.003) TCGA-VS-A9U5-01 9 43630600 43630600 A G SPATA31A6 Silent p.F34F 0.12 TCGA-VS-A9U5-01 X 103294940 103294940 G A H2BFM Missense_Mutation p.A133T 0.21 deleterious(0.05) possibly_damaging(0.781) TCGA-VS-A9U5-01 X 11776784 11776784 G A MSL3 Intron 0.12 TCGA-VS-A9U5-01 X 13732438 13732438 C G TRAPPC2 3'Flank 0.18 TCGA-VS-A9U5-01 X 148797813 148797813 C A MAGEA11 Missense_Mutation p.H223N 0.05 tolerated(0.41) benign(0) TCGA-VS-A9U5-01 X 153068924 153068924 G A PDZD4 Missense_Mutation p.R732W 0.17 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U5-01 X 17752541 17752541 A C NHS 3'UTR 0.08 TCGA-VS-A9U5-01 X 26212662 26212662 C - MAGEB6 Frame_Shift_Del p.P234Lfs*19 0.10 TCGA-VS-A9U5-01 X 46434198 46434198 C T CHST7 Missense_Mutation p.R278C 0.31 deleterious(0.02) benign(0.148) TCGA-VS-A9U5-01 X 48886294 48886294 C A TFE3 3'UTR 0.06 TCGA-VS-A9U5-01 X 71521704 71521704 C T CITED1 Missense_Mutation p.D177N 0.09 deleterious(0) probably_damaging(1) TCGA-VS-A9U5-01 X 80532596 80532596 A T SH3BGRL Silent p.V53V 0.09 TCGA-VS-A9U5-01 X 83695594 83695594 C A HDX Splice_Site p.X418_splice 0.09 TCGA-VS-A9U6-01 10 105967514 105967514 G A WDR96 Silent p.Y268Y 0.14 TCGA-VS-A9U6-01 10 115987794 115987794 C T TDRD1 Intron 0.36 TCGA-VS-A9U6-01 10 116014729 116014729 C T VWA2 Silent p.S61S 0.33 TCGA-VS-A9U6-01 10 117045807 117045808 - A ATRNL1 Frame_Shift_Ins p.L774Tfs*5 0.26 TCGA-VS-A9U6-01 10 119798874 119798874 C T RAB11FIP2 Missense_Mutation p.E292K 0.52 tolerated(0.1) benign(0.001) TCGA-VS-A9U6-01 10 124377558 124377558 A G DMBT1 Silent p.R1510R 0.09 TCGA-VS-A9U6-01 10 124380739 124380739 G A DMBT1 Silent p.S1688S 0.08 TCGA-VS-A9U6-01 10 124380756 124380756 G A DMBT1 Missense_Mutation p.R1694Q 0.16 tolerated(0.31) benign(0.319) TCGA-VS-A9U6-01 10 125801889 125801889 C T CHST15 Missense_Mutation p.A321T 0.21 tolerated(0.06) possibly_damaging(0.786) TCGA-VS-A9U6-01 10 134016280 134016280 G A DPYSL4 Missense_Mutation p.R471Q 0.43 tolerated(0.09) probably_damaging(1) TCGA-VS-A9U6-01 10 134732822 134732822 G A TTC40 Nonsense_Mutation p.R619* 0.41 TCGA-VS-A9U6-01 10 3190509 3190509 C T PITRM1 Intron 0.31 TCGA-VS-A9U6-01 10 43883171 43883171 A T HNRNPF Missense_Mutation p.S54R 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A9U6-01 10 61898828 61898828 C T ANK3 Missense_Mutation p.G878R 0.27 probably_damaging(1) TCGA-VS-A9U6-01 10 64159513 64159513 A - ZNF365 Intron 0.28 TCGA-VS-A9U6-01 10 70048713 70048713 C T PBLD Missense_Mutation p.V163I 0.34 tolerated(0.47) benign(0.007) TCGA-VS-A9U6-01 10 70166610 70166610 G C RUFY2 Missense_Mutation p.Q4E 0.47 tolerated_low_confidence(0.28) benign(0.021) TCGA-VS-A9U6-01 10 70182357 70182357 G C DNA2 Missense_Mutation p.L889V 0.41 tolerated(0.16) possibly_damaging(0.808) TCGA-VS-A9U6-01 10 70192039 70192039 A G DNA2 Silent p.R685R 0.38 TCGA-VS-A9U6-01 10 73566027 73566027 G A CDH23 Missense_Mutation p.V483M 0.23 tolerated(0.07) benign(0.018) TCGA-VS-A9U6-01 10 75557342 75557342 C T ZSWIM8 Missense_Mutation p.A1214V 0.31 deleterious(0.01) possibly_damaging(0.508) TCGA-VS-A9U6-01 10 75566433 75566433 G T NDST2 Silent p.L410L 0.50 TCGA-VS-A9U6-01 10 7679261 7679261 G A ITIH5 Silent p.S194S 0.32 TCGA-VS-A9U6-01 10 7762902 7762902 G A ITIH2 Silent p.P238P 0.25 TCGA-VS-A9U6-01 10 8051290 8051290 C T TAF3 Silent p.Y855Y 0.21 TCGA-VS-A9U6-01 10 81273233 81273233 T G EIF5AL1 3'UTR 0.35 TCGA-VS-A9U6-01 10 82034286 82034286 C T MAT1A Missense_Mutation p.V359I 0.39 tolerated(0.34) benign(0.008) TCGA-VS-A9U6-01 10 88651883 88651883 G C BMPR1A Splice_Site p.X77_splice 0.35 TCGA-VS-A9U6-01 10 88683715 88683715 T - BMPR1A 3'UTR 0.33 TCGA-VS-A9U6-01 10 89514203 89514203 A - ATAD1 3'UTR 0.10 TCGA-VS-A9U6-01 10 93600411 93600411 G A TNKS2 Missense_Mutation p.V541M 0.28 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 10 95095741 95095741 C T MYOF Silent p.T1500T 0.39 TCGA-VS-A9U6-01 10 97733820 97733820 C T RP11-248J23.6 Missense_Mutation p.S281L 0.22 deleterious(0) probably_damaging(0.997) TCGA-VS-A9U6-01 11 101833181 101833181 C T KIAA1377 Missense_Mutation p.A472V 0.11 deleterious(0.01) possibly_damaging(0.804) TCGA-VS-A9U6-01 11 10820767 10820767 G A EIF4G2 Silent p.F843F 0.39 TCGA-VS-A9U6-01 11 112126110 112126110 C T PLET1 Splice_Site p.X129_splice 0.46 TCGA-VS-A9U6-01 11 119531915 119531915 G A PVRL1 3'UTR 0.55 TCGA-VS-A9U6-01 11 124016657 124016657 A G VWA5A 3'UTR 0.36 TCGA-VS-A9U6-01 11 124310401 124310401 A G OR8B8 Missense_Mutation p.V194A 0.38 tolerated_low_confidence(0.13) benign(0.019) TCGA-VS-A9U6-01 11 1264703 1264703 A G MUC5B Missense_Mutation p.H2198R 0.64 possibly_damaging(0.48) TCGA-VS-A9U6-01 11 19246022 19246022 G A E2F8 3'UTR 0.20 TCGA-VS-A9U6-01 11 3062180 3062180 G A CARS Missense_Mutation p.T134M 0.29 deleterious(0.05) benign(0.21) TCGA-VS-A9U6-01 11 32456414 32456414 A C WT1 Missense_Mutation p.F160V 0.11 deleterious_low_confidence(0.02) benign(0.039) TCGA-VS-A9U6-01 11 45671007 45671007 G T CHST1 3'UTR 0.26 TCGA-VS-A9U6-01 11 45880393 45880393 G T CRY2 Nonsense_Mutation p.E167* 0.24 TCGA-VS-A9U6-01 11 46686403 46686403 C T ATG13 Missense_Mutation p.S298L 0.29 tolerated_low_confidence(0.2) benign(0.021) TCGA-VS-A9U6-01 11 47611394 47611394 G C C1QTNF4 Silent p.L323L 0.33 TCGA-VS-A9U6-01 11 563680 563680 G T RASSF7 3'UTR 0.20 TCGA-VS-A9U6-01 11 56570199 56570199 C - OR5G5P RNA 0.30 TCGA-VS-A9U6-01 11 60702904 60702904 G A TMEM132A Missense_Mutation p.A674T 0.35 tolerated(0.85) benign(0.008) TCGA-VS-A9U6-01 11 614245 614246 - C IRF7 Frame_Shift_Ins p.A216Gfs*199 0.26 TCGA-VS-A9U6-01 11 62397082 62397082 G A GANAB Silent p.F626F 0.32 TCGA-VS-A9U6-01 11 62397122 62397122 G T GANAB Missense_Mutation p.S613Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-VS-A9U6-01 11 62397726 62397726 G A GANAB Silent p.F534F 0.25 TCGA-VS-A9U6-01 11 62398625 62398625 G T GANAB Missense_Mutation p.Q365K 0.33 tolerated(0.87) benign(0.016) TCGA-VS-A9U6-01 11 62400675 62400675 G C GANAB Missense_Mutation p.H255Q 0.32 tolerated(0.06) probably_damaging(0.992) TCGA-VS-A9U6-01 11 62571026 62571026 T C NXF1 Silent p.R78R 0.42 TCGA-VS-A9U6-01 11 64673240 64673241 GT - ATG2A Frame_Shift_Del p.H1115Pfs*9 0.28 TCGA-VS-A9U6-01 11 65123572 65123572 C T TIGD3 Missense_Mutation p.T98M 0.21 deleterious(0) probably_damaging(0.987) TCGA-VS-A9U6-01 11 65620215 65620215 C T SNX32 Silent p.L343L 0.38 TCGA-VS-A9U6-01 11 6890985 6890985 C T OR10A2 5'UTR 0.25 TCGA-VS-A9U6-01 11 792331 792331 C T SLC25A22 Missense_Mutation p.A239T 0.17 deleterious(0.04) probably_damaging(0.916) TCGA-VS-A9U6-01 11 8009109 8009109 G A EIF3F Silent p.A70A 0.47 TCGA-VS-A9U6-01 11 8662663 8662663 G T TRIM66 Missense_Mutation p.A273E 0.20 deleterious(0.04) benign(0.196) TCGA-VS-A9U6-01 11 8669613 8669613 A C TRIM66 Missense_Mutation p.V102G 0.41 deleterious(0.01) probably_damaging(0.976) TCGA-VS-A9U6-01 11 89405146 89405146 G T FOLH1B RNA 0.33 TCGA-VS-A9U6-01 12 100708328 100708328 G C SCYL2 Missense_Mutation p.R344T 0.28 tolerated(0.27) benign(0.184) TCGA-VS-A9U6-01 12 101790183 101790183 A G ARL1 Missense_Mutation p.M170T 0.55 deleterious(0) probably_damaging(0.939) TCGA-VS-A9U6-01 12 104645445 104645445 C T TXNRD1 Missense_Mutation p.R78C 0.44 tolerated(0.15) possibly_damaging(0.465) TCGA-VS-A9U6-01 12 10560227 10560227 C T KLRC4 3'UTR 0.33 TCGA-VS-A9U6-01 12 108051361 108051361 G A BTBD11 Missense_Mutation p.E1061K 0.26 tolerated(0.06) possibly_damaging(0.738) TCGA-VS-A9U6-01 12 108930536 108930536 C T SART3 Silent p.L445L 0.34 TCGA-VS-A9U6-01 12 109181959 109181959 G A SSH1 Silent p.L985L 0.21 TCGA-VS-A9U6-01 12 110348928 110348928 C A TCHP Missense_Mutation p.H314N 0.30 tolerated(0.14) benign(0.002) TCGA-VS-A9U6-01 12 110386533 110386533 G A GIT2 Intron 0.41 TCGA-VS-A9U6-01 12 110765475 110765475 C T ATP2A2 Nonsense_Mutation p.Q250* 0.30 TCGA-VS-A9U6-01 12 110781206 110781206 G A ATP2A2 Missense_Mutation p.G830R 0.22 tolerated(0.08) benign(0.319) TCGA-VS-A9U6-01 12 112467122 112467122 C G NAA25 3'UTR 0.42 TCGA-VS-A9U6-01 12 113544986 113544986 C T RASAL1 Missense_Mutation p.A526T 0.41 tolerated(0.21) benign(0.015) TCGA-VS-A9U6-01 12 117154350 117154350 G A C12orf49 3'UTR 0.26 TCGA-VS-A9U6-01 12 122257559 122257559 C A SETD1B Missense_Mutation p.P1180H 0.33 unknown(0) TCGA-VS-A9U6-01 12 123944398 123944398 C T SNRNP35 5'UTR 0.35 TCGA-VS-A9U6-01 12 124239052 124239052 T G ATP6V0A2 Missense_Mutation p.L754R 0.24 deleterious(0) possibly_damaging(0.794) TCGA-VS-A9U6-01 12 124317684 124317684 G A DNAH10 Silent p.T1405T 0.29 TCGA-VS-A9U6-01 12 124832734 124832736 GAG - NCOR2 In_Frame_Del p.S1324del 0.36 TCGA-VS-A9U6-01 12 12795006 12795006 A G CREBL2 3'UTR 0.07 TCGA-VS-A9U6-01 12 129190607 129190607 G - TMEM132C Frame_Shift_Del p.R1034Gfs*21 0.26 TCGA-VS-A9U6-01 12 130184456 130184456 G A TMEM132D Silent p.S289S 0.35 TCGA-VS-A9U6-01 12 20769282 20769282 G A PDE3A Missense_Mutation p.S463N 0.36 tolerated(0.25) possibly_damaging(0.844) TCGA-VS-A9U6-01 12 2977865 2977865 G T FOXM1 Missense_Mutation p.P237Q 0.30 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 12 31577615 31577615 G A DENND5B Missense_Mutation p.R749C 0.44 deleterious(0) probably_damaging(0.983) TCGA-VS-A9U6-01 12 48543434 48543434 C G ASB8 Silent p.L194L 0.20 TCGA-VS-A9U6-01 12 49414125 49414125 C - KMT2D 3'UTR 0.29 TCGA-VS-A9U6-01 12 49433960 49433960 G - KMT2D Frame_Shift_Del p.S2532Lfs*11 0.10 TCGA-VS-A9U6-01 12 50264250 50264250 C T FAIM2 3'UTR 0.36 TCGA-VS-A9U6-01 12 51752995 51752995 C T GALNT6 Missense_Mutation p.R430H 0.30 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U6-01 12 53808256 53808256 G A SP1 3'Flank 0.26 TCGA-VS-A9U6-01 12 54339158 54339158 C T HOXC13 3'UTR 0.42 TCGA-VS-A9U6-01 12 56429963 56429963 T G IKZF4 3'UTR 0.10 TCGA-VS-A9U6-01 12 56487276 56487276 T C ERBB3 Silent p.L474L 0.29 TCGA-VS-A9U6-01 12 57136856 57136856 T - PRIM1 Frame_Shift_Del p.K221Nfs*24 0.25 TCGA-VS-A9U6-01 12 57548400 57548400 C G LRP1 Silent p.V381V 0.40 TCGA-VS-A9U6-01 12 57573862 57573862 G A LRP1 Missense_Mutation p.S1725N 0.38 benign(0.009) TCGA-VS-A9U6-01 12 57598202 57598203 - C LRP1 Frame_Shift_Ins p.L3656Pfs*23 0.26 TCGA-VS-A9U6-01 12 62799548 62799548 A G USP15 3'UTR 0.06 TCGA-VS-A9U6-01 12 66275495 66275495 C T RP11-366L20.2 Intron 0.20 TCGA-VS-A9U6-01 12 66275503 66275503 C T RP11-366L20.2 Missense_Mutation p.E88K 0.21 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-VS-A9U6-01 12 6982122 6982122 C T SPSB2 5'UTR 0.31 TCGA-VS-A9U6-01 12 69980064 69980064 T C CCT2 Silent p.L6L 0.25 TCGA-VS-A9U6-01 12 72025599 72025599 A - ZFC3H1 Frame_Shift_Del p.F1143Lfs*9 0.30 TCGA-VS-A9U6-01 12 73012692 73012692 T C TRHDE Silent p.N736N 0.32 TCGA-VS-A9U6-01 12 7310190 7310190 C G CLSTN3 Nonsense_Mutation p.S878* 0.26 TCGA-VS-A9U6-01 12 85449534 85449534 G A LRRIQ1 Nonsense_Mutation p.W321* 0.12 TCGA-VS-A9U6-01 13 37005979 37005979 G A CCNA1 5'Flank 0.31 TCGA-VS-A9U6-01 13 39265433 39265433 G A FREM2 Missense_Mutation p.D1318N 0.40 deleterious(0.02) benign(0.028) TCGA-VS-A9U6-01 13 39358831 39358834 TCTT - FREM2 Frame_Shift_Del p.S1969Cfs*12 0.19 TCGA-VS-A9U6-01 13 41132504 41132504 A - FOXO1 3'UTR 0.32 TCGA-VS-A9U6-01 13 49027160 49027160 C G RB1 Nonsense_Mutation p.S576* 0.35 TCGA-VS-A9U6-01 13 50587359 50587359 T C TRIM13 3'Flank 0.32 TCGA-VS-A9U6-01 13 52548452 52548452 C T ATP7B Missense_Mutation p.D302N 0.27 tolerated(0.56) benign(0.02) TCGA-VS-A9U6-01 14 102515827 102515827 G A DYNC1H1 Missense_Mutation p.V4475I 0.39 possibly_damaging(0.831) TCGA-VS-A9U6-01 14 103442264 103442264 C T CDC42BPB Missense_Mutation p.R448Q 0.29 tolerated(0.1) benign(0.087) TCGA-VS-A9U6-01 14 103923545 103923545 G C MARK3 Missense_Mutation p.R160T 0.21 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 14 104645082 104645082 C A KIF26A Missense_Mutation p.A1769D 0.24 tolerated(1) benign(0) TCGA-VS-A9U6-01 14 21852199 21852199 C T SUPT16H 5'UTR 0.36 TCGA-VS-A9U6-01 14 23243236 23243236 G A SLC7A7 Silent p.I445I 0.27 TCGA-VS-A9U6-01 14 23243249 23243249 A G SLC7A7 Missense_Mutation p.I441T 0.29 tolerated(0.08) benign(0.171) TCGA-VS-A9U6-01 14 23893334 23893334 C T MYH7 Missense_Mutation p.E902K 0.30 deleterious(0) probably_damaging(0.965) TCGA-VS-A9U6-01 14 23894065 23894065 C T MYH7 Silent p.E864E 0.39 TCGA-VS-A9U6-01 14 23895022 23895022 C T MYH7 Missense_Mutation p.R723H 0.37 tolerated(0.05) probably_damaging(0.992) TCGA-VS-A9U6-01 14 24408650 24408651 - A DHRS4-AS1 5'UTR 0.36 TCGA-VS-A9U6-01 14 24601015 24601015 C A RP11-468E2.6 Silent p.A269A 0.38 TCGA-VS-A9U6-01 14 24842327 24842327 G A NFATC4 Intron 0.36 TCGA-VS-A9U6-01 14 24842434 24842434 G A NFATC4 Missense_Mutation p.E536K 0.29 deleterious(0.01) possibly_damaging(0.794) TCGA-VS-A9U6-01 14 24898055 24898055 G - CBLN3 Frame_Shift_Del p.P69Lfs*35 0.29 TCGA-VS-A9U6-01 14 26916079 26916079 T A NOVA1 3'UTR 0.09 TCGA-VS-A9U6-01 14 35522586 35522586 G A FAM177A1 Missense_Mutation p.E90K 0.42 deleterious(0) possibly_damaging(0.636) TCGA-VS-A9U6-01 14 39650864 39650864 G A PNN Missense_Mutation p.D651N 0.39 deleterious_low_confidence(0) unknown(0) TCGA-VS-A9U6-01 14 42373662 42373662 C T LRFN5 3'UTR 0.31 TCGA-VS-A9U6-01 14 59930261 59930261 T - GPR135 3'UTR 0.22 TCGA-VS-A9U6-01 14 65406499 65406499 C T GPX2 Missense_Mutation p.G94R 0.27 deleterious(0.03) possibly_damaging(0.903) TCGA-VS-A9U6-01 14 70238211 70238212 - A SRSF5 3'UTR 0.21 TCGA-VS-A9U6-01 14 73136794 73136794 A G DPF3 3'UTR 0.07 TCGA-VS-A9U6-01 14 73572602 73572602 G A RBM25 Missense_Mutation p.R397Q 0.23 unknown(0) TCGA-VS-A9U6-01 14 80130204 80130204 C T NRXN3 Silent p.G803G 0.33 TCGA-VS-A9U6-01 14 80330215 80330215 A G NRXN3 3'Flank 0.27 TCGA-VS-A9U6-01 14 91110516 91110516 G A TTC7B Nonsense_Mutation p.Q543* 0.39 TCGA-VS-A9U6-01 14 93117942 93117942 C T RIN3 Missense_Mutation p.S183L 0.33 tolerated(0.08) unknown(0) TCGA-VS-A9U6-01 14 93278058 93278058 G T GOLGA5 Nonsense_Mutation p.E427* 0.29 TCGA-VS-A9U6-01 14 98099940 98099940 G A RP11-76E12.1 RNA 0.24 TCGA-VS-A9U6-01 15 101775436 101775437 - C CHSY1 Frame_Shift_Ins p.P223Afs*29 0.41 TCGA-VS-A9U6-01 15 23261833 23261834 AG - GOLGA8I Frame_Shift_Del p.R317Sfs*63 0.14 TCGA-VS-A9U6-01 15 25310193 25310193 A - SNORD116-6 RNA 0.29 TCGA-VS-A9U6-01 15 28482137 28482137 C T HERC2 Silent p.P1325P 0.37 TCGA-VS-A9U6-01 15 42178305 42178305 C A SPTBN5 Missense_Mutation p.R383M 0.25 probably_damaging(0.971) TCGA-VS-A9U6-01 15 42742957 42742957 A - ZNF106 Frame_Shift_Del p.S482Pfs*33 0.35 TCGA-VS-A9U6-01 15 43622444 43622444 G C LCMT2 Missense_Mutation p.R82G 0.46 tolerated(0.12) benign(0.012) TCGA-VS-A9U6-01 15 48748877 48748877 A G FBN1 Silent p.C1793C 0.22 TCGA-VS-A9U6-01 15 52069154 52069154 C T TMOD2 Silent p.L144L 0.38 TCGA-VS-A9U6-01 15 56216888 56216888 G A NEDD4 Nonsense_Mutation p.Q83* 0.31 TCGA-VS-A9U6-01 15 56384903 56384903 T - RFX7 3'UTR 0.15 TCGA-VS-A9U6-01 15 64067523 64067523 G A HERC1 Silent p.A100A 0.23 TCGA-VS-A9U6-01 15 65772702 65772702 C T DPP8 Missense_Mutation p.R401H 0.34 tolerated(0.13) benign(0.035) TCGA-VS-A9U6-01 15 71185968 71185969 - A LRRC49 Frame_Shift_Ins p.N34Kfs*6 0.26 TCGA-VS-A9U6-01 15 72511311 72511311 C G PKM Missense_Mutation p.R43P 0.14 deleterious(0) probably_damaging(0.99) TCGA-VS-A9U6-01 15 74315404 74315404 C T PML Missense_Mutation p.R280C 0.56 deleterious(0) probably_damaging(0.982) TCGA-VS-A9U6-01 15 74494864 74494864 A T STRA6 5'UTR 0.36 TCGA-VS-A9U6-01 15 75950786 75950786 A G SNX33 3'UTR 0.31 TCGA-VS-A9U6-01 15 81552148 81552148 A - IL16 Frame_Shift_Del p.K117Nfs*2 0.28 TCGA-VS-A9U6-01 15 83924769 83924769 C A BNC1 3'UTR 0.29 TCGA-VS-A9U6-01 15 83936885 83936885 C T BNC1 Missense_Mutation p.A67T 0.32 deleterious(0) probably_damaging(0.998) TCGA-VS-A9U6-01 15 88472410 88472410 A C NTRK3 Intron 0.17 TCGA-VS-A9U6-01 15 90169214 90169214 A G TICRR Missense_Mutation p.S1842G 0.25 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U6-01 15 90320394 90320394 C T MESP2 Missense_Mutation p.A269V 0.46 tolerated(0.42) benign(0.018) TCGA-VS-A9U6-01 15 90617404 90617404 C T ZNF710 Silent p.H569H 0.34 TCGA-VS-A9U6-01 15 93534746 93534746 C T CHD2 Missense_Mutation p.R1152W 0.33 deleterious(0) probably_damaging(0.973) TCGA-VS-A9U6-01 16 11220062 11220071 TTTCTCTCTG - CLEC16A Intron 0.45 TCGA-VS-A9U6-01 16 1270085 1270085 G - CACNA1H Frame_Shift_Del p.G2053Afs*135 0.20 TCGA-VS-A9U6-01 16 1550679 1550679 G A TELO2 Silent p.E420E 0.19 TCGA-VS-A9U6-01 16 1779515 1779515 G C MAPK8IP3 Missense_Mutation p.E180Q 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-VS-A9U6-01 16 1817656 1817656 C A MAPK8IP3 Missense_Mutation p.S1109Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U6-01 16 2012460 2012461 GA - RPS2 Intron 0.10 TCGA-VS-A9U6-01 16 2293409 2293409 G A ECI1 Missense_Mutation p.A158V 0.22 deleterious(0) possibly_damaging(0.803) TCGA-VS-A9U6-01 16 23652858 23652858 G A DCTN5 5'UTR 0.30 TCGA-VS-A9U6-01 16 24920285 24920285 C T SLC5A11 Silent p.C506C 0.30 TCGA-VS-A9U6-01 16 2813354 2813354 C T SRRM2 Missense_Mutation p.T942M 0.20 unknown(0) TCGA-VS-A9U6-01 16 29870452 29870452 T C CDIPT 3'UTR 0.25 TCGA-VS-A9U6-01 16 30122734 30122736 AGA - GDPD3 In_Frame_Del p.F227del 0.13 TCGA-VS-A9U6-01 16 30616163 30616163 G A ZNF689 Missense_Mutation p.R309C 0.20 deleterious(0) probably_damaging(0.996) TCGA-VS-A9U6-01 16 3065456 3065456 C - CLDN6 Frame_Shift_Del p.S190Pfs*70 0.24 TCGA-VS-A9U6-01 16 4312698 4312698 C T TFAP4 Missense_Mutation p.A32T 0.33 deleterious(0.01) benign(0.444) TCGA-VS-A9U6-01 16 53634591 53634591 T - RPGRIP1L 3'Flank 0.38 TCGA-VS-A9U6-01 16 57144753 57144753 G C CPNE2 Missense_Mutation p.Q33H 0.35 tolerated(0.08) possibly_damaging(0.796) TCGA-VS-A9U6-01 16 58757792 58757792 T C GOT2 Missense_Mutation p.H35R 0.27 tolerated(0.16) benign(0.002) TCGA-VS-A9U6-01 16 619332 619332 T C NHLRC4 3'UTR 0.33 TCGA-VS-A9U6-01 16 68283295 68283295 T G PLA2G15 Missense_Mutation p.L77R 0.31 deleterious(0) probably_damaging(0.997) TCGA-VS-A9U6-01 16 69732200 69732200 T - NFAT5 3'UTR 0.23 TCGA-VS-A9U6-01 16 70057543 70057543 G A PDXDC2P RNA 0.25 TCGA-VS-A9U6-01 16 70867804 70867804 G A HYDIN Silent p.G4555G 0.19 TCGA-VS-A9U6-01 16 747100 747100 G A FBXL16 Silent p.L102L 0.37 TCGA-VS-A9U6-01 16 75203965 75203965 G A ZFP1 Silent p.T319T 0.35 TCGA-VS-A9U6-01 16 86544754 86544754 C T FOXF1 Silent p.G193G 0.40 TCGA-VS-A9U6-01 16 88498923 88498923 G T ZNF469 Missense_Mutation p.G1654V 0.37 possibly_damaging(0.736) TCGA-VS-A9U6-01 16 89985961 89985961 C T MC1R Missense_Mutation p.L99F 0.26 tolerated(0.08) benign(0.075) TCGA-VS-A9U6-01 17 1370585 1370585 G C MYO1C Missense_Mutation p.P1039R 0.44 tolerated(0.42) benign(0.015) TCGA-VS-A9U6-01 17 17046908 17046908 C T MPRIP Silent p.D358D 0.51 TCGA-VS-A9U6-01 17 21319698 21319698 C A KCNJ12 Silent p.T348T 0.11 TCGA-VS-A9U6-01 17 2202269 2202269 A G SMG6 Missense_Mutation p.L593P 0.47 tolerated(0.2) possibly_damaging(0.616) TCGA-VS-A9U6-01 17 26696316 26696316 G A VTN Silent p.L221L 0.39 TCGA-VS-A9U6-01 17 27239593 27239593 C T PHF12 Missense_Mutation p.A666T 0.36 tolerated(0.33) benign(0.06) TCGA-VS-A9U6-01 17 27381679 27381679 G A PIPOX Silent p.L259L 0.33 TCGA-VS-A9U6-01 17 27802774 27802774 T C TAOK1 Silent p.R97R 0.17 TCGA-VS-A9U6-01 17 3352143 3352143 C T SPATA22 Silent p.K210K 0.50 TCGA-VS-A9U6-01 17 3352348 3352348 C A SPATA22 Missense_Mutation p.G142V 0.34 deleterious(0.01) probably_damaging(0.951) TCGA-VS-A9U6-01 17 33770819 33770821 TGT - SLFN13 In_Frame_Del p.Q395del 0.25 TCGA-VS-A9U6-01 17 3402307 3402307 C T ASPA Silent p.Y289Y 0.65 TCGA-VS-A9U6-01 17 34344981 34344981 G A CCL23 5'UTR 0.41 TCGA-VS-A9U6-01 17 36891407 36891407 A - PCGF2 3'UTR 0.29 TCGA-VS-A9U6-01 17 39535351 39535351 G A KRT34 Silent p.I360I 0.28 TCGA-VS-A9U6-01 17 39681138 39681138 C T KRT19 Missense_Mutation p.G206D 0.45 tolerated(0.08) possibly_damaging(0.608) TCGA-VS-A9U6-01 17 39963117 39963117 G T LEPREL4 Nonsense_Mutation p.Y359* 0.44 TCGA-VS-A9U6-01 17 40354455 40354455 C T STAT5B Missense_Mutation p.A714T 0.26 tolerated(0.42) benign(0.011) TCGA-VS-A9U6-01 17 40832427 40832427 G A CCR10 Missense_Mutation p.S78F 0.27 deleterious(0.01) possibly_damaging(0.639) TCGA-VS-A9U6-01 17 46628343 46628343 G A HOXB3 Missense_Mutation p.R217C 0.26 deleterious(0) probably_damaging(0.973) TCGA-VS-A9U6-01 17 4720306 4720306 C T PLD2 Missense_Mutation p.R553W 0.52 deleterious(0) probably_damaging(0.991) TCGA-VS-A9U6-01 17 47904889 47904889 G A KAT7 3'UTR 0.33 TCGA-VS-A9U6-01 17 48068985 48068985 C T DLX3 Missense_Mutation p.A254T 0.10 tolerated(0.23) benign(0) TCGA-VS-A9U6-01 17 49710861 49710861 G T CA10 Silent p.R314R 0.24 TCGA-VS-A9U6-01 17 52991175 52991175 G T TOM1L1 Missense_Mutation p.V147F 0.30 tolerated(0.09) benign(0.021) TCGA-VS-A9U6-01 17 54671289 54671289 C T NOG 5'UTR 0.36 TCGA-VS-A9U6-01 17 56567368 56567368 A - MTMR4 3'UTR 0.33 TCGA-VS-A9U6-01 17 56621622 56621622 G A C17orf47 5'UTR 0.35 TCGA-VS-A9U6-01 17 58286062 58286062 A - USP32 Frame_Shift_Del p.L909Cfs*13 0.23 TCGA-VS-A9U6-01 17 59152364 59152364 G A BCAS3 Missense_Mutation p.E720K 0.27 deleterious(0.01) probably_damaging(0.964) TCGA-VS-A9U6-01 17 62009574 62009574 C T CD79B Silent p.A16A 0.30 TCGA-VS-A9U6-01 17 63554674 63554674 G A AXIN2 Missense_Mutation p.P22L 0.56 deleterious(0.05) possibly_damaging(0.864) TCGA-VS-A9U6-01 17 67129810 67129810 T - ABCA6 Frame_Shift_Del p.M255* 0.25 TCGA-VS-A9U6-01 17 67218780 67218780 T - ABCA10 Frame_Shift_Del p.K31Nfs*18 0.25 TCGA-VS-A9U6-01 17 71281767 71281767 G - CDC42EP4 Frame_Shift_Del p.S292Afs*90 0.33 TCGA-VS-A9U6-01 17 73089759 73089759 G T SLC16A5 Missense_Mutation p.G10C 0.45 deleterious(0) probably_damaging(0.91) TCGA-VS-A9U6-01 17 73699897 73699897 G C SAP30BP Missense_Mutation p.D187H 0.19 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 17 73732384 73732384 C T ITGB4 Missense_Mutation p.R593C 0.27 deleterious(0) probably_damaging(0.932) TCGA-VS-A9U6-01 17 73750817 73750817 C T ITGB4 Silent p.N1493N 0.36 TCGA-VS-A9U6-01 17 75398439 75398439 C T SEPT9 Silent p.I125I 0.32 TCGA-VS-A9U6-01 17 76047303 76047303 C T TNRC6C Silent p.R720R 0.39 TCGA-VS-A9U6-01 17 76420210 76420210 C G DNAH17 Missense_Mutation p.G4412A 0.62 benign(0.328) TCGA-VS-A9U6-01 17 77759984 77759984 G T CBX2 3'UTR 0.47 TCGA-VS-A9U6-01 17 7806037 7806037 G A CHD3 Missense_Mutation p.R1180Q 0.57 possibly_damaging(0.553) TCGA-VS-A9U6-01 17 78261836 78261836 G A RNF213 Missense_Mutation p.G162S 0.62 benign(0.001) TCGA-VS-A9U6-01 17 78328003 78328003 C T RNF213 Intron 0.13 TCGA-VS-A9U6-01 17 80008609 80008609 C A RFNG Silent p.A116A 0.45 TCGA-VS-A9U6-01 17 80195666 80195666 C T SLC16A3 Silent p.F340F 0.47 TCGA-VS-A9U6-01 17 80274202 80274202 G A CD7 Missense_Mutation p.L161F 0.24 tolerated(0.87) probably_damaging(0.931) TCGA-VS-A9U6-01 17 8048201 8048201 C A PER1 Missense_Mutation p.G777W 0.61 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 17 8354199 8354199 G A NDEL1 Missense_Mutation p.V210I 0.47 tolerated(0.13) benign(0.349) TCGA-VS-A9U6-01 18 10485710 10485710 C T APCDD1 Silent p.Y342Y 0.37 TCGA-VS-A9U6-01 18 19424144 19424144 A G MIB1 Missense_Mutation p.Q714R 0.21 tolerated(0.13) probably_damaging(0.989) TCGA-VS-A9U6-01 18 21649157 21649157 C A TTC39C Silent p.R128R 0.25 TCGA-VS-A9U6-01 18 44634966 44634966 C T HDHD2 3'UTR 0.55 TCGA-VS-A9U6-01 18 67992107 67992107 C G SOCS6 Nonsense_Mutation p.S68* 0.58 TCGA-VS-A9U6-01 18 71825309 71825309 C T TIMM21 Missense_Mutation p.R175W 0.52 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 18 77917351 77917351 T C PARD6G 3'UTR 0.43 TCGA-VS-A9U6-01 19 11170800 11170800 G A SMARCA4 Silent p.P1616P 0.27 TCGA-VS-A9U6-01 19 1221313 1221314 - C STK11 Frame_Shift_Ins p.L282Afs*3 0.33 TCGA-VS-A9U6-01 19 12760168 12760168 C T MAN2B1 Missense_Mutation p.R781Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-VS-A9U6-01 19 15132473 15132473 C T CCDC105 Missense_Mutation p.R363W 0.30 deleterious(0) probably_damaging(0.998) TCGA-VS-A9U6-01 19 15547737 15547737 G - WIZ Frame_Shift_Del p.L137Wfs*13 0.25 TCGA-VS-A9U6-01 19 16790836 16790836 C T TMEM38A Silent p.L56L 0.75 TCGA-VS-A9U6-01 19 17403583 17403583 C T ABHD8 Missense_Mutation p.E403K 0.37 deleterious(0) probably_damaging(0.989) TCGA-VS-A9U6-01 19 19823000 19823000 C G ZNF14 Missense_Mutation p.E364Q 0.19 tolerated(0.09) probably_damaging(0.968) TCGA-VS-A9U6-01 19 23159214 23159214 C T ZNF728 Missense_Mutation p.E309K 0.29 tolerated(0.11) probably_damaging(0.927) TCGA-VS-A9U6-01 19 2408468 2408468 C T TMPRSS9 Silent p.N285N 0.45 TCGA-VS-A9U6-01 19 33603401 33603401 G - GPATCH1 Frame_Shift_Del p.D593Ifs*6 0.15 TCGA-VS-A9U6-01 19 35829070 35829070 G A CD22 Splice_Site p.X329_splice 0.20 TCGA-VS-A9U6-01 19 36037687 36037687 C A TMEM147 Silent p.A107A 0.31 TCGA-VS-A9U6-01 19 38033451 38033451 C A ZNF793 3'UTR 0.26 TCGA-VS-A9U6-01 19 38384564 38384564 C G WDR87 Missense_Mutation p.Q554H 0.24 benign(0.023) TCGA-VS-A9U6-01 19 38876235 38876235 A T GGN Missense_Mutation p.V556E 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.702) TCGA-VS-A9U6-01 19 40398043 40398043 A G FCGBP Silent p.P2308P 0.16 TCGA-VS-A9U6-01 19 40886758 40886758 G - HIPK4 Frame_Shift_Del p.T381Rfs*52 0.23 TCGA-VS-A9U6-01 19 41003463 41003463 C T SPTBN4 Missense_Mutation p.R246C 0.08 deleterious(0) benign(0.195) TCGA-VS-A9U6-01 19 42300616 42300616 C - CEACAM3 Frame_Shift_Del p.S5Qfs*21 0.33 TCGA-VS-A9U6-01 19 44376916 44376916 G C ZNF404 Missense_Mutation p.Q484E 0.22 tolerated(0.32) benign(0.167) TCGA-VS-A9U6-01 19 44516516 44516516 C A ZNF230 3'UTR 0.23 TCGA-VS-A9U6-01 19 45648714 45648714 C T PPP1R37 Missense_Mutation p.P467L 0.16 deleterious(0.04) benign(0.015) TCGA-VS-A9U6-01 19 45815113 45815113 C T CKM Missense_Mutation p.E183K 0.34 tolerated(0.07) benign(0.041) TCGA-VS-A9U6-01 19 46289679 46289679 G A DMWD Missense_Mutation p.R359C 0.28 deleterious(0) probably_damaging(0.965) TCGA-VS-A9U6-01 19 46511560 46511560 G C CCDC61 Splice_Site p.X184_splice 0.32 TCGA-VS-A9U6-01 19 47287364 47287364 G A SLC1A5 Missense_Mutation p.T216I 0.38 tolerated(0.05) benign(0.128) TCGA-VS-A9U6-01 19 48185398 48185398 C T GLTSCR1 Missense_Mutation p.P758S 0.64 unknown(0) TCGA-VS-A9U6-01 19 48620939 48620939 C T LIG1 Missense_Mutation p.A847T 0.22 deleterious(0) probably_damaging(0.986) TCGA-VS-A9U6-01 19 49261398 49261398 A G FGF21 Missense_Mutation p.Q184R 0.47 tolerated(0.2) benign(0.009) TCGA-VS-A9U6-01 19 49409129 49409129 C T NUCB1 Silent p.A121A 0.58 TCGA-VS-A9U6-01 19 50097715 50097715 C T PRR12 Silent p.L68L 0.28 TCGA-VS-A9U6-01 19 51128547 51128547 C T SYT3 Missense_Mutation p.G527R 0.35 deleterious(0.02) benign(0.271) TCGA-VS-A9U6-01 19 53573377 53573377 T - ZNF160 Frame_Shift_Del p.N137Mfs*36 0.22 TCGA-VS-A9U6-01 19 55813516 55813516 T C BRSK1 Silent p.I279I 0.45 TCGA-VS-A9U6-01 19 59010239 59010239 G - SLC27A5 Frame_Shift_Del p.G604Afs*40 0.29 TCGA-VS-A9U6-01 19 59067722 59067722 C T UBE2M Silent p.T124T 0.35 TCGA-VS-A9U6-01 19 6479049 6479049 G A DENND1C Silent p.A65A 0.66 TCGA-VS-A9U6-01 19 648476 648476 C G RNF126 Missense_Mutation p.E228Q 0.44 deleterious(0.02) probably_damaging(0.918) TCGA-VS-A9U6-01 19 6711040 6711040 C T C3 Missense_Mutation p.M479I 0.36 tolerated(0.17) benign(0) TCGA-VS-A9U6-01 19 746493 746493 C T PALM Silent p.G281G 0.43 TCGA-VS-A9U6-01 19 7797053 7797053 G A CLEC4G 5'UTR 0.36 TCGA-VS-A9U6-01 19 8316064 8316065 - C CERS4 Frame_Shift_Ins p.Q37Pfs*21 0.28 TCGA-VS-A9U6-01 19 9204514 9204514 C T OR1M1 Silent p.F198F 0.33 TCGA-VS-A9U6-01 19 9296984 9296985 - T OR7D2 Frame_Shift_Ins p.C179Lfs*13 0.32 TCGA-VS-A9U6-01 1 100584676 100584676 T - SASS6 Frame_Shift_Del p.K189Nfs*4 0.35 TCGA-VS-A9U6-01 1 110168322 110168322 T C AMPD2 Silent p.R141R 0.34 TCGA-VS-A9U6-01 1 114248535 114248535 C T PHTF1 Missense_Mutation p.V550M 0.17 deleterious(0) probably_damaging(0.997) TCGA-VS-A9U6-01 1 120162604 120162604 C T ZNF697 3'UTR 0.31 TCGA-VS-A9U6-01 1 1254783 1254783 G A CPSF3L Missense_Mutation p.R114C 0.15 tolerated(0.11) probably_damaging(0.999) TCGA-VS-A9U6-01 1 12941936 12941936 T C PRAMEF4 Missense_Mutation p.N205S 0.35 deleterious(0.03) benign(0.015) TCGA-VS-A9U6-01 1 1376008 1376008 G T VWA1 3'UTR 0.18 TCGA-VS-A9U6-01 1 144882677 144882677 A G PDE4DIP Silent p.N1114N 0.15 TCGA-VS-A9U6-01 1 150258960 150258960 C T C1orf51 Missense_Mutation p.T251I 0.12 tolerated(0.09) possibly_damaging(0.649) TCGA-VS-A9U6-01 1 150482894 150482894 C T ECM1 Intron 0.10 TCGA-VS-A9U6-01 1 150938740 150938740 G A CERS2 Missense_Mutation p.R343W 0.23 deleterious(0.02) possibly_damaging(0.857) TCGA-VS-A9U6-01 1 151196853 151196853 G C PIP5K1A Missense_Mutation p.E43Q 0.27 tolerated_low_confidence(0.61) benign(0) TCGA-VS-A9U6-01 1 151264025 151264025 G - ZNF687 3'UTR 0.27 TCGA-VS-A9U6-01 1 151288762 151288762 C T PI4KB Missense_Mutation p.V78M 0.14 tolerated_low_confidence(0.12) benign(0.229) TCGA-VS-A9U6-01 1 152083313 152083313 G A TCHH Missense_Mutation p.R794W 0.26 unknown(0) TCGA-VS-A9U6-01 1 154310105 154310105 G C ATP8B2 Intron 0.44 TCGA-VS-A9U6-01 1 155176087 155176087 G A THBS3 Silent p.L64L 0.20 TCGA-VS-A9U6-01 1 155282154 155282154 C T FDPS Missense_Mutation p.R150W 0.20 tolerated(0.18) benign(0.066) TCGA-VS-A9U6-01 1 155305384 155305384 A - ASH1L 3'Flank 0.17 TCGA-VS-A9U6-01 1 158225990 158225990 A T CD1A Silent p.I174I 0.23 TCGA-VS-A9U6-01 1 160208407 160208407 G A DCAF8 Missense_Mutation p.A285V 0.29 deleterious(0.01) benign(0.248) TCGA-VS-A9U6-01 1 165370571 165370572 - GAA RXRG In_Frame_Ins p.F440dup 0.19 TCGA-VS-A9U6-01 1 167095914 167095914 C T DUSP27 Missense_Mutation p.R516W 0.22 deleterious(0) probably_damaging(0.969) TCGA-VS-A9U6-01 1 171076886 171076886 G T FMO3 Missense_Mutation p.R131M 0.20 tolerated(0.06) possibly_damaging(0.537) TCGA-VS-A9U6-01 1 171486843 171486843 G T PRRC2C Missense_Mutation p.D212Y 0.19 unknown(0) TCGA-VS-A9U6-01 1 172002387 172002387 G A DNM3 Silent p.L277L 0.22 TCGA-VS-A9U6-01 1 174969205 174969205 G A CACYBP 5'UTR 0.26 TCGA-VS-A9U6-01 1 176564358 176564358 C T PAPPA2 Missense_Mutation p.P540S 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 1 180240448 180240448 G A LHX4 Intron 0.27 TCGA-VS-A9U6-01 1 183113225 183113225 A G LAMC1 3'UTR 0.46 TCGA-VS-A9U6-01 1 183523165 183523165 G - SMG7 3'UTR 0.16 TCGA-VS-A9U6-01 1 186355210 186355210 C T C1orf27 Missense_Mutation p.R109C 0.07 deleterious(0) benign(0.092) TCGA-VS-A9U6-01 1 192335245 192335245 T - RGS21 Frame_Shift_Del p.L152Cfs*7 0.09 TCGA-VS-A9U6-01 1 197072765 197072766 - A ASPM Frame_Shift_Ins p.L1872Ffs*24 0.13 TCGA-VS-A9U6-01 1 201163368 201163368 G C IGFN1 Missense_Mutation p.E32Q 0.20 unknown(0) TCGA-VS-A9U6-01 1 201169443 201169443 C T IGFN1 Silent p.Y179Y 0.20 TCGA-VS-A9U6-01 1 203040818 203040818 A G PPFIA4 Splice_Site p.X603_splice 0.24 TCGA-VS-A9U6-01 1 20305328 20305328 C G PLA2G2A 5'UTR 0.37 TCGA-VS-A9U6-01 1 203467895 203467895 C T OPTC Missense_Mutation p.R153W 0.17 deleterious(0.01) probably_damaging(0.93) TCGA-VS-A9U6-01 1 203710463 203710463 G A ATP2B4 3'UTR 0.22 TCGA-VS-A9U6-01 1 205719128 205719128 G C NUCKS1 5'UTR 0.41 TCGA-VS-A9U6-01 1 205812881 205812881 G A PM20D1 Silent p.L247L 0.24 TCGA-VS-A9U6-01 1 206566160 206566160 C T SRGAP2 Missense_Mutation p.R115W 0.05 deleterious(0.01) possibly_damaging(0.772) TCGA-VS-A9U6-01 1 206631979 206631979 C T SRGAP2 Missense_Mutation p.R754C 0.08 deleterious(0) possibly_damaging(0.655) TCGA-VS-A9U6-01 1 206858820 206858820 C T MAPKAPK2 Silent p.F82F 0.27 TCGA-VS-A9U6-01 1 207934634 207934634 A G CD46 Silent p.K172K 0.21 TCGA-VS-A9U6-01 1 20809917 20809918 - T CAMK2N1 3'UTR 0.24 TCGA-VS-A9U6-01 1 20992746 20992746 C T KIF17 Missense_Mutation p.A958T 0.25 deleterious(0.03) benign(0.255) TCGA-VS-A9U6-01 1 210334252 210334252 G A SYT14 Missense_Mutation p.M575I 0.21 tolerated(0.05) benign(0.328) TCGA-VS-A9U6-01 1 215408792 215408792 G A KCNK2 3'UTR 0.21 TCGA-VS-A9U6-01 1 22033387 22033387 A G USP48 Intron 0.40 TCGA-VS-A9U6-01 1 220366588 220366588 A G RAB3GAP2 Missense_Mutation p.W422R 0.23 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 1 220863810 220863810 G A C1orf115 Silent p.G22G 0.23 TCGA-VS-A9U6-01 1 223983721 223983721 A G TP53BP2 Silent p.P840P 0.21 TCGA-VS-A9U6-01 1 224922304 224922304 C T CNIH3 Silent p.Y117Y 0.22 TCGA-VS-A9U6-01 1 225562511 225562511 G A DNAH14 Missense_Mutation p.R4054Q 0.63 benign(0.024) TCGA-VS-A9U6-01 1 225742710 225742710 C T ENAH Missense_Mutation p.A83T 0.26 deleterious(0) unknown(0) TCGA-VS-A9U6-01 1 227968233 227968233 G A SNAP47 Silent p.L418L 0.26 TCGA-VS-A9U6-01 1 228285832 228285832 G A ARF1 3'UTR 0.21 TCGA-VS-A9U6-01 1 228481237 228481237 G A OBSCN Missense_Mutation p.R4113H 0.31 benign(0.017) TCGA-VS-A9U6-01 1 229685088 229685088 G A ABCB10 Missense_Mutation p.T204I 0.22 deleterious(0.04) benign(0.035) TCGA-VS-A9U6-01 1 231664461 231664461 A G TSNAX 5'UTR 0.30 TCGA-VS-A9U6-01 1 236647099 236647099 C T EDARADD 3'Flank 0.38 TCGA-VS-A9U6-01 1 236711486 236711486 A C LGALS8 3'UTR 0.35 TCGA-VS-A9U6-01 1 244869297 244869298 - T DESI2 3'UTR 0.28 TCGA-VS-A9U6-01 1 27633854 27633854 G C WDTC1 3'UTR 0.27 TCGA-VS-A9U6-01 1 28891255 28891255 G A TRNAU1AP Missense_Mutation p.V107M 0.40 tolerated(0.08) possibly_damaging(0.821) TCGA-VS-A9U6-01 1 32120984 32120984 T C COL16A1 Silent p.G1407G 0.37 TCGA-VS-A9U6-01 1 32672121 32672121 C T IQCC Silent p.S146S 0.22 TCGA-VS-A9U6-01 1 33276581 33276581 C T YARS Silent p.T45T 0.35 TCGA-VS-A9U6-01 1 36230249 36230249 G A CLSPN Missense_Mutation p.S67F 0.22 deleterious(0) possibly_damaging(0.857) TCGA-VS-A9U6-01 1 36306884 36306884 A G AGO4 Missense_Mutation p.S615G 0.18 deleterious(0) possibly_damaging(0.861) TCGA-VS-A9U6-01 1 38059416 38059416 C T GNL2 Missense_Mutation p.M32I 0.32 tolerated(0.16) benign(0.133) TCGA-VS-A9U6-01 1 38230727 38230727 G A EPHA10 Silent p.C4C 0.23 TCGA-VS-A9U6-01 1 38305745 38305745 C T MTF1 Missense_Mutation p.R165Q 0.43 deleterious(0.01) benign(0.025) TCGA-VS-A9U6-01 1 38462803 38462803 C G FHL3 3'UTR 0.32 TCGA-VS-A9U6-01 1 44169409 44169409 T C KDM4A Splice_Site p.X987_splice 0.17 TCGA-VS-A9U6-01 1 44401265 44401265 C T ARTN 5'UTR 0.05 TCGA-VS-A9U6-01 1 45098025 45098025 G C RNF220 Missense_Mutation p.R306P 0.70 deleterious(0) benign(0.157) TCGA-VS-A9U6-01 1 46739326 46739326 C T RAD54L Missense_Mutation p.A506V 0.63 deleterious(0.03) probably_damaging(0.999) TCGA-VS-A9U6-01 1 46763249 46763249 G A LRRC41 Missense_Mutation p.P115S 0.08 deleterious(0) probably_damaging(0.978) TCGA-VS-A9U6-01 1 47685516 47685516 C T TAL1 Missense_Mutation p.C291Y 0.21 deleterious(0) probably_damaging(0.99) TCGA-VS-A9U6-01 1 48688454 48688454 G A SLC5A9 Missense_Mutation p.G16R 0.17 tolerated_low_confidence(0.22) benign(0.003) TCGA-VS-A9U6-01 1 55452073 55452073 G C TMEM61 Missense_Mutation p.D107H 0.60 deleterious(0.03) probably_damaging(0.979) TCGA-VS-A9U6-01 1 55586425 55586425 C T USP24 Missense_Mutation p.R1451H 0.29 deleterious(0) probably_damaging(0.996) TCGA-VS-A9U6-01 1 65099858 65099858 A G CACHD1 Silent p.S256S 0.27 TCGA-VS-A9U6-01 1 6525593 6525593 G A TNFRSF25 Missense_Mutation p.R23W 0.29 deleterious(0.02) possibly_damaging(0.54) TCGA-VS-A9U6-01 1 6528057 6528057 C A PLEKHG5 Missense_Mutation p.G1026W 0.42 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-VS-A9U6-01 1 67442335 67442335 G A MIER1 Missense_Mutation p.E387K 0.22 deleterious(0) possibly_damaging(0.808) TCGA-VS-A9U6-01 1 7840335 7840336 - A VAMP3 3'UTR 0.31 TCGA-VS-A9U6-01 1 78958902 78958902 T C PTGFR Silent p.G158G 0.26 TCGA-VS-A9U6-01 1 865591 865593 GAA - SAMD11 In_Frame_Del p.K45del 0.16 TCGA-VS-A9U6-01 1 87031655 87031655 C A CLCA4 Silent p.I302I 0.33 TCGA-VS-A9U6-01 1 9074853 9074853 G A SLC2A7 Missense_Mutation p.R264C 0.43 deleterious(0) probably_damaging(0.932) TCGA-VS-A9U6-01 1 92495623 92495623 G A EPHX4 5'UTR 0.48 TCGA-VS-A9U6-01 1 93672799 93672799 C T CCDC18 Silent p.D405D 0.34 TCGA-VS-A9U6-01 20 1281224 1281224 G A SNPH Silent p.T59T 0.19 TCGA-VS-A9U6-01 20 43243290 43243290 G T PKIG Missense_Mutation p.E31D 0.29 tolerated(0.29) possibly_damaging(0.842) TCGA-VS-A9U6-01 20 44506857 44506857 C G ZSWIM3 Missense_Mutation p.Q554E 0.46 tolerated(0.11) benign(0.264) TCGA-VS-A9U6-01 20 49576785 49576785 G A MOCS3 3'UTR 0.34 TCGA-VS-A9U6-01 20 57415887 57415887 C T RP4-806M20.3 5'Flank 0.26 TCGA-VS-A9U6-01 20 60881744 60881744 C T ADRM1 Silent p.H165H 0.29 TCGA-VS-A9U6-01 20 60892553 60892553 C T LAMA5 Silent p.E2453E 0.45 TCGA-VS-A9U6-01 20 61916088 61916088 C T ARFGAP1 Intron 0.11 TCGA-VS-A9U6-01 20 9624898 9624898 G A PAK7 Missense_Mutation p.P27S 0.28 tolerated(0.34) benign(0.423) TCGA-VS-A9U6-01 21 15753695 15753695 G C HSPA13 Missense_Mutation p.I65M 0.20 deleterious(0.01) benign(0.104) TCGA-VS-A9U6-01 21 34058083 34058083 A - SYNJ1 Frame_Shift_Del p.Y404Ifs*35 0.22 TCGA-VS-A9U6-01 21 34117161 34117161 G A PAXBP1 Missense_Mutation p.T711I 0.24 tolerated(1) benign(0.009) TCGA-VS-A9U6-01 21 37507442 37507442 G A CBR3 5'UTR 0.44 TCGA-VS-A9U6-01 21 37741853 37741853 G C MORC3 Missense_Mutation p.Q729H 0.29 tolerated(0.05) benign(0.013) TCGA-VS-A9U6-01 21 40565584 40565584 T C BRWD1 Intron 0.10 TCGA-VS-A9U6-01 21 41032999 41032999 G C B3GALT5 Silent p.L171L 0.22 TCGA-VS-A9U6-01 21 43133160 43133160 C A LINC00479 Intron 0.12 TCGA-VS-A9U6-01 21 43529789 43529789 G A UMODL1 Missense_Mutation p.R546H 0.29 deleterious(0) probably_damaging(0.92) TCGA-VS-A9U6-01 21 44838954 44838954 C T SIK1 Missense_Mutation p.R470Q 0.54 deleterious(0) benign(0.222) TCGA-VS-A9U6-01 21 46396812 46396812 C T FAM207A 3'UTR 0.36 TCGA-VS-A9U6-01 21 47422462 47422462 G T COL6A1 Missense_Mutation p.D758Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U6-01 21 47831175 47831175 C T PCNT Nonsense_Mutation p.R1730* 0.30 TCGA-VS-A9U6-01 22 17598265 17598265 G A CECR6 3'UTR 0.33 TCGA-VS-A9U6-01 22 20133663 20133663 G - ZDHHC8 Intron 0.22 TCGA-VS-A9U6-01 22 24124583 24124583 C T MMP11 Missense_Mutation p.R416W 0.39 deleterious(0) probably_damaging(0.93) TCGA-VS-A9U6-01 22 24628921 24628921 G A GGT5 Missense_Mutation p.R156C 0.17 deleterious(0) probably_damaging(0.989) TCGA-VS-A9U6-01 22 26937316 26937316 A G TPST2 Missense_Mutation p.V94A 0.10 deleterious(0) probably_damaging(0.97) TCGA-VS-A9U6-01 22 30127404 30127404 C A CABP7 3'UTR 0.29 TCGA-VS-A9U6-01 22 31091344 31091344 C T OSBP2 Silent p.L150L 0.33 TCGA-VS-A9U6-01 22 36661773 36661773 G A APOL1 Silent p.P313P 0.38 TCGA-VS-A9U6-01 22 38027052 38027052 C T GGA1 Missense_Mutation p.P492S 0.21 tolerated(0.34) benign(0.04) TCGA-VS-A9U6-01 22 39780736 39780736 C T SYNGR1 3'UTR 0.30 TCGA-VS-A9U6-01 22 40078554 40078554 C T CACNA1I Silent p.F1906F 0.24 TCGA-VS-A9U6-01 22 40085013 40085013 C T CACNA1I 3'UTR 0.48 TCGA-VS-A9U6-01 22 40677289 40677289 G A TNRC6B Missense_Mutation p.R1193K 0.24 deleterious(0.01) possibly_damaging(0.745) TCGA-VS-A9U6-01 22 42042898 42042898 A G XRCC6 Splice_Site p.X258_splice 0.27 TCGA-VS-A9U6-01 22 42981188 42981188 C T POLDIP3 3'UTR 0.30 TCGA-VS-A9U6-01 22 45128149 45128149 C T PRR5 Missense_Mutation p.R168C 0.23 deleterious(0) probably_damaging(0.991) TCGA-VS-A9U6-01 22 46318996 46318996 T C WNT7B Missense_Mutation p.M264V 0.19 tolerated(0.29) benign(0.005) TCGA-VS-A9U6-01 22 50885174 50885174 G T SBF1 3'UTR 0.30 TCGA-VS-A9U6-01 2 103125345 103125345 A - SLC9A4 Frame_Shift_Del p.T483Pfs*15 0.22 TCGA-VS-A9U6-01 2 109930060 109930060 T C SH3RF3 Intron 0.31 TCGA-VS-A9U6-01 2 110375695 110375695 G C SOWAHC 3'UTR 0.41 TCGA-VS-A9U6-01 2 12882700 12882700 T - TRIB2 3'UTR 0.14 TCGA-VS-A9U6-01 2 130737381 130737381 A G RAB6C 5'UTR 0.31 TCGA-VS-A9U6-01 2 131520476 131520476 G T AMER3 Missense_Mutation p.Q277H 0.34 deleterious(0.05) probably_damaging(0.962) TCGA-VS-A9U6-01 2 135710283 135710283 T C CCNT2 Splice_Site p.X258_splice 0.30 TCGA-VS-A9U6-01 2 15307398 15307398 G A NBAS Missense_Mutation p.A2297V 0.27 tolerated(0.07) benign(0.11) TCGA-VS-A9U6-01 2 160176646 160176646 T - BAZ2B 3'UTR 0.25 TCGA-VS-A9U6-01 2 160813069 160813069 C T PLA2R1 Missense_Mutation p.A992T 0.34 tolerated(0.39) benign(0.232) TCGA-VS-A9U6-01 2 165772427 165772427 C A SLC38A11 Missense_Mutation p.G169V 0.35 deleterious(0) probably_damaging(0.997) TCGA-VS-A9U6-01 2 166535534 166535534 G A CSRNP3 Silent p.E343E 0.28 TCGA-VS-A9U6-01 2 170103911 170103911 G A LRP2 Missense_Mutation p.S962L 0.32 benign(0.068) TCGA-VS-A9U6-01 2 170940143 170940144 TA - UBR3 3'UTR 0.20 TCGA-VS-A9U6-01 2 175425306 175425306 T A WIPF1 3'UTR 0.42 TCGA-VS-A9U6-01 2 17698737 17698737 T - RAD51AP2 Frame_Shift_Del p.T316Lfs*2 0.24 TCGA-VS-A9U6-01 2 186654084 186654084 G A FSIP2 Missense_Mutation p.E830K 0.44 benign(0.367) TCGA-VS-A9U6-01 2 192257938 192257938 G T MYO1B Missense_Mutation p.R739M 0.24 deleterious(0) probably_damaging(0.91) TCGA-VS-A9U6-01 2 196788374 196788374 T - DNAH7 Frame_Shift_Del p.N1257Ifs*11 0.38 TCGA-VS-A9U6-01 2 196889220 196889220 C T DNAH7 Missense_Mutation p.V226I 0.26 tolerated(0.61) possibly_damaging(0.589) TCGA-VS-A9U6-01 2 197297975 197297975 C T HECW2 Missense_Mutation p.R58H 0.22 deleterious(0) probably_damaging(0.992) TCGA-VS-A9U6-01 2 220346365 220346365 C A SPEG Missense_Mutation p.P1843H 0.30 probably_damaging(0.999) TCGA-VS-A9U6-01 2 220354314 220354314 G A SPEG Silent p.A2858A 0.31 TCGA-VS-A9U6-01 2 227662903 227662903 G A IRS1 Silent p.R184R 0.27 TCGA-VS-A9U6-01 2 228178348 228178348 C T COL4A3 3'UTR 0.23 TCGA-VS-A9U6-01 2 233635657 233635657 G C KCNJ13 Missense_Mutation p.A139G 0.34 deleterious(0) probably_damaging(0.959) TCGA-VS-A9U6-01 2 241696755 241696755 G - KIF1A Frame_Shift_Del p.L947Cfs*4 0.26 TCGA-VS-A9U6-01 2 242651410 242651411 - A ING5 Frame_Shift_Ins p.R138Kfs*26 0.19 TCGA-VS-A9U6-01 2 242651482 242651482 G T ING5 Nonsense_Mutation p.G160* 0.21 TCGA-VS-A9U6-01 2 24425828 24425828 G T ITSN2 3'UTR 0.26 TCGA-VS-A9U6-01 2 26690330 26690330 G A OTOF Missense_Mutation p.A1377V 0.18 tolerated(0.38) benign(0.011) TCGA-VS-A9U6-01 2 26695420 26695420 G A OTOF Silent p.I1277I 0.18 TCGA-VS-A9U6-01 2 27592821 27592821 G C EIF2B4 Silent p.L20L 0.15 TCGA-VS-A9U6-01 2 31165083 31165083 C A GALNT14 Missense_Mutation p.W310C 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 2 32718684 32718684 G A BIRC6 Silent p.Q2806Q 0.17 TCGA-VS-A9U6-01 2 32773058 32773058 G T BIRC6 Nonsense_Mutation p.E4318* 0.20 TCGA-VS-A9U6-01 2 42671674 42671674 G A KCNG3 Silent p.I237I 0.20 TCGA-VS-A9U6-01 2 46602942 46602942 C T EPAS1 Missense_Mutation p.P334S 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 2 46612369 46612370 - A EPAS1 3'UTR 0.14 TCGA-VS-A9U6-01 2 54147422 54147422 T G PSME4 Missense_Mutation p.E776D 0.27 deleterious(0.02) benign(0.355) TCGA-VS-A9U6-01 2 56599519 56599519 C T CCDC85A Missense_Mutation p.S453L 0.28 tolerated_low_confidence(0.29) benign(0.014) TCGA-VS-A9U6-01 2 5837249 5837249 G A SOX11 3'UTR 0.33 TCGA-VS-A9U6-01 2 63281318 63281318 G A OTX1 Silent p.P78P 0.26 TCGA-VS-A9U6-01 2 64861154 64861154 T - SERTAD2 3'UTR 0.21 TCGA-VS-A9U6-01 2 69692753 69692753 C T AAK1 3'Flank 0.24 TCGA-VS-A9U6-01 2 73518623 73518623 C T EGR4 Missense_Mutation p.G578S 0.36 deleterious(0.02) possibly_damaging(0.743) TCGA-VS-A9U6-01 2 74648932 74648932 C T WDR54 5'UTR 0.26 TCGA-VS-A9U6-01 2 80530213 80530213 C T LRRTM1 Silent p.K244K 0.34 TCGA-VS-A9U6-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.26 TCGA-VS-A9U6-01 2 86067102 86067102 A - ST3GAL5 3'UTR 0.25 TCGA-VS-A9U6-01 2 97507798 97507798 T G ANKRD23 Missense_Mutation p.K100T 0.29 tolerated(0.11) possibly_damaging(0.688) TCGA-VS-A9U6-01 2 97869928 97869928 G A ANKRD36 Missense_Mutation p.A997T 0.20 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-VS-A9U6-01 3 101051767 101051767 A G SENP7 Intron 0.16 TCGA-VS-A9U6-01 3 105295464 105295464 A - ALCAM 3'UTR 0.30 TCGA-VS-A9U6-01 3 105586361 105586361 G A CBLB Nonsense_Mutation p.R21* 0.10 TCGA-VS-A9U6-01 3 108474619 108474619 T C RETNLB 3'UTR 0.12 TCGA-VS-A9U6-01 3 111632382 111632382 G A PHLDB2 Missense_Mutation p.D518N 0.29 tolerated(0.12) possibly_damaging(0.58) TCGA-VS-A9U6-01 3 113025048 113025048 T - WDR52 Frame_Shift_Del p.V1587* 0.12 TCGA-VS-A9U6-01 3 113135471 113135471 G A WDR52 Missense_Mutation p.H192Y 0.09 deleterious(0) possibly_damaging(0.643) TCGA-VS-A9U6-01 3 113699626 113699626 C A KIAA1407 Missense_Mutation p.K726N 0.71 deleterious(0.02) probably_damaging(0.934) TCGA-VS-A9U6-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.24 TCGA-VS-A9U6-01 3 118865647 118865647 G A C3orf30 Missense_Mutation p.R204Q 0.34 tolerated(0.49) benign(0.003) TCGA-VS-A9U6-01 3 119466061 119466061 G A MAATS1 Missense_Mutation p.E668K 0.11 tolerated(0.19) benign(0.037) TCGA-VS-A9U6-01 3 120363280 120363280 G A HGD Silent p.G220G 0.14 TCGA-VS-A9U6-01 3 128627085 128627085 C T ACAD9 Missense_Mutation p.R446C 0.16 deleterious(0) benign(0.009) TCGA-VS-A9U6-01 3 128973556 128973556 G A COPG1 Silent p.P123P 0.17 TCGA-VS-A9U6-01 3 128976673 128976673 A T COPG1 Missense_Mutation p.S281C 0.20 deleterious(0.02) possibly_damaging(0.759) TCGA-VS-A9U6-01 3 129140501 129140501 C A EFCAB12 Missense_Mutation p.K65N 0.04 tolerated(0.19) benign(0.01) TCGA-VS-A9U6-01 3 129140505 129140505 C T EFCAB12 Missense_Mutation p.R64H 0.13 tolerated(0.17) benign(0.003) TCGA-VS-A9U6-01 3 129369459 129369459 A - TMCC1 3'UTR 0.09 TCGA-VS-A9U6-01 3 12966144 12966144 C T IQSEC1 Missense_Mutation p.S570N 0.08 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 3 130425796 130425796 G A PIK3R4 Missense_Mutation p.S906L 0.24 tolerated(0.28) benign(0.01) TCGA-VS-A9U6-01 3 130447320 130447320 A - PIK3R4 Frame_Shift_Del p.F598Lfs*4 0.13 TCGA-VS-A9U6-01 3 132400870 132400872 CTT - NPHP3 In_Frame_Del p.E1292del 0.10 TCGA-VS-A9U6-01 3 13363781 13363781 G A NUP210 Silent p.I1609I 0.24 TCGA-VS-A9U6-01 3 13679265 13679265 G T FBLN2 Missense_Mutation p.R1181M 0.23 deleterious(0) probably_damaging(0.94) TCGA-VS-A9U6-01 3 139257754 139257757 TGTC - RBP1 Frame_Shift_Del p.D102Kfs*10 0.18 TCGA-VS-A9U6-01 3 141295934 141295934 C T RASA2 Nonsense_Mutation p.R526* 0.17 TCGA-VS-A9U6-01 3 14201298 14201298 G A XPC Silent p.L311L 0.18 TCGA-VS-A9U6-01 3 14523205 14523205 G A SLC6A6 Silent p.K526K 0.11 TCGA-VS-A9U6-01 3 14528806 14528806 C A SLC6A6 3'UTR 0.13 TCGA-VS-A9U6-01 3 148880075 148880075 G C HPS3 Missense_Mutation p.Q749H 0.14 tolerated(1) probably_damaging(0.977) TCGA-VS-A9U6-01 3 148880094 148880094 A T HPS3 Missense_Mutation p.I756F 0.14 tolerated(0.14) probably_damaging(0.923) TCGA-VS-A9U6-01 3 150176405 150176405 G A TSC22D2 Silent p.P775P 0.14 TCGA-VS-A9U6-01 3 15211798 15211798 G T COL6A4P1 RNA 0.49 TCGA-VS-A9U6-01 3 15212068 15212068 G T COL6A4P1 RNA 0.47 TCGA-VS-A9U6-01 3 155547484 155547484 G C SLC33A1 Missense_Mutation p.A492G 0.06 tolerated(0.31) benign(0) TCGA-VS-A9U6-01 3 157920877 157920877 C T RSRC1 Missense_Mutation p.R113C 0.18 tolerated_low_confidence(0.12) unknown(0) TCGA-VS-A9U6-01 3 159706964 159706964 G A IL12A Intron 0.20 TCGA-VS-A9U6-01 3 160218043 160218043 G A KPNA4 3'UTR 0.09 TCGA-VS-A9U6-01 3 167728056 167728056 G A GOLIM4 3'UTR 0.25 TCGA-VS-A9U6-01 3 169710787 169710787 G A SEC62 Missense_Mutation p.C379Y 0.06 tolerated_low_confidence(0.14) unknown(0) TCGA-VS-A9U6-01 3 169866925 169866925 A G PHC3 Silent p.T174T 0.14 TCGA-VS-A9U6-01 3 170584081 170584081 G A RPL22L1 3'UTR 0.17 TCGA-VS-A9U6-01 3 172165356 172165356 A C GHSR Intron 0.18 TCGA-VS-A9U6-01 3 178546005 178546005 G A KCNMB2 Silent p.A89A 0.11 TCGA-VS-A9U6-01 3 182661936 182661936 A - DCUN1D1 3'UTR 0.12 TCGA-VS-A9U6-01 3 182989332 182989332 T - B3GNT5 3'UTR 0.10 TCGA-VS-A9U6-01 3 182990471 182990471 A - MCF2L2 Intron 0.12 TCGA-VS-A9U6-01 3 185198087 185198087 G A MAP3K13 Missense_Mutation p.D857N 0.12 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-VS-A9U6-01 3 185229438 185229438 C A LIPH Missense_Mutation p.R381I 0.20 deleterious(0.04) benign(0.284) TCGA-VS-A9U6-01 3 186760912 186760912 C T ST6GAL1 Missense_Mutation p.R141C 0.13 possibly_damaging(0.505) TCGA-VS-A9U6-01 3 193130095 193130096 - T ATP13A4 Frame_Shift_Ins p.M1027Nfs*4 0.12 TCGA-VS-A9U6-01 3 194063319 194063319 T C CPN2 Missense_Mutation p.E38G 0.26 deleterious(0) benign(0.421) TCGA-VS-A9U6-01 3 196387574 196387574 C A NRROS Missense_Mutation p.L354I 0.08 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 3 196669207 196669207 G C NCBP2 Intron 0.12 TCGA-VS-A9U6-01 3 196669254 196669254 T C NCBP2 Intron 0.17 TCGA-VS-A9U6-01 3 197421306 197421306 G A KIAA0226 Missense_Mutation p.R542W 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 3 197770294 197770294 A G LMLN 3'Flank 0.20 TCGA-VS-A9U6-01 3 32859533 32859533 T C TRIM71 5'UTR 0.19 TCGA-VS-A9U6-01 3 38926795 38926795 C G SCN11A Missense_Mutation p.E1016D 0.30 tolerated(0.35) benign(0.032) TCGA-VS-A9U6-01 3 48621169 48621170 - G COL7A1 Frame_Shift_Ins p.G1442Wfs*8 0.31 TCGA-VS-A9U6-01 3 48964942 48964942 G - ARIH2 5'UTR 0.26 TCGA-VS-A9U6-01 3 50296095 50296095 G T GNAI2 3'UTR 0.46 TCGA-VS-A9U6-01 3 69230371 69230371 G T FRMD4B Missense_Mutation p.H844N 0.41 tolerated(0.15) possibly_damaging(0.608) TCGA-VS-A9U6-01 3 86116090 86116090 G A CADM2 3'Flank 0.26 TCGA-VS-A9U6-01 3 9976232 9976232 C G CRELD1 Missense_Mutation p.S37C 0.57 deleterious(0.03) possibly_damaging(0.792) TCGA-VS-A9U6-01 4 100844248 100844248 T C DNAJB14 Missense_Mutation p.K134E 0.32 deleterious(0) probably_damaging(0.995) TCGA-VS-A9U6-01 4 104640396 104640396 G A TACR3 Missense_Mutation p.A146V 0.39 deleterious(0) possibly_damaging(0.875) TCGA-VS-A9U6-01 4 106163423 106163423 T - TET2 Intron 0.30 TCGA-VS-A9U6-01 4 108955738 108955738 A G HADH 3'UTR 0.27 TCGA-VS-A9U6-01 4 113351824 113351824 C T ALPK1 Missense_Mutation p.T374M 0.08 tolerated(0.13) benign(0.007) TCGA-VS-A9U6-01 4 118006156 118006156 A - TRAM1L1 Frame_Shift_Del p.S132Lfs*9 0.23 TCGA-VS-A9U6-01 4 123249412 123249412 C T KIAA1109 Nonsense_Mutation p.R3717* 0.15 TCGA-VS-A9U6-01 4 134073815 134073815 C T PCDH10 Silent p.C840C 0.38 TCGA-VS-A9U6-01 4 152680037 152680037 G A PET112 Missense_Mutation p.H72Y 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 4 159048501 159048501 A - FAM198B 3'UTR 0.34 TCGA-VS-A9U6-01 4 165878431 165878431 C T FAM218A Missense_Mutation p.A86V 0.42 tolerated_low_confidence(0.1) possibly_damaging(0.695) TCGA-VS-A9U6-01 4 170037760 170037760 C T SH3RF1 Missense_Mutation p.R600H 0.46 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U6-01 4 175238990 175238990 A - CEP44 Intron 0.32 TCGA-VS-A9U6-01 4 184203902 184203902 A - WWC2 Frame_Shift_Del p.E911Rfs*16 0.16 TCGA-VS-A9U6-01 4 184828068 184828068 C T STOX2 Missense_Mutation p.A42V 0.42 tolerated_low_confidence(0.05) benign(0.026) TCGA-VS-A9U6-01 4 187079242 187079242 G A FAM149A Intron 0.17 TCGA-VS-A9U6-01 4 24578184 24578184 A C DHX15 Silent p.A63A 0.27 TCGA-VS-A9U6-01 4 54364883 54364883 G A LNX1 Silent p.I301I 0.39 TCGA-VS-A9U6-01 4 57796923 57796923 C A REST Silent p.P633P 0.29 TCGA-VS-A9U6-01 4 5862929 5862929 C A CRMP1 Missense_Mutation p.G160V 0.19 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U6-01 4 69344613 69344613 C T TMPRSS11E Silent p.D338D 0.26 TCGA-VS-A9U6-01 5 10261696 10261696 C T CCT5 Missense_Mutation p.R340W 0.38 deleterious(0) probably_damaging(0.991) TCGA-VS-A9U6-01 5 114860458 114860458 C G FEM1C Missense_Mutation p.Q467H 0.21 tolerated(0.08) benign(0.049) TCGA-VS-A9U6-01 5 129522044 129522045 - T CHSY3 3'UTR 0.12 TCGA-VS-A9U6-01 5 132216417 132216417 C A AFF4 3'UTR 0.27 TCGA-VS-A9U6-01 5 132432906 132432906 C T HSPA4 Silent p.N619N 0.37 TCGA-VS-A9U6-01 5 137878419 137878419 G A ETF1 Intron 0.39 TCGA-VS-A9U6-01 5 138713751 138713751 G A SLC23A1 Missense_Mutation p.R460C 0.42 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 5 140229692 140229692 C T PCDHA9 Missense_Mutation p.R538C 0.32 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-VS-A9U6-01 5 140307248 140307248 C A PCDHAC1 Silent p.A257A 0.25 TCGA-VS-A9U6-01 5 140536977 140536977 C T PCDHB17 Silent p.P467P 0.35 TCGA-VS-A9U6-01 5 140718719 140718719 G C PCDHGA2 Missense_Mutation p.E61Q 0.40 deleterious_low_confidence(0.03) benign(0.183) TCGA-VS-A9U6-01 5 140752107 140752107 C T PCDHGB3 Nonsense_Mutation p.R716* 0.17 TCGA-VS-A9U6-01 5 140953278 140953278 C T DIAPH1 Missense_Mutation p.M713I 0.30 unknown(0) TCGA-VS-A9U6-01 5 140953666 140953666 G T DIAPH1 Missense_Mutation p.P584H 0.34 unknown(0) TCGA-VS-A9U6-01 5 145890050 145890051 - A TCERG1 Frame_Shift_Ins p.I1050Nfs*5 0.16 TCGA-VS-A9U6-01 5 14693188 14693188 T C FAM105B 3'UTR 0.21 TCGA-VS-A9U6-01 5 147162134 147162134 T G JAKMIP2 5'UTR 0.30 TCGA-VS-A9U6-01 5 153078632 153078632 G T GRIA1 Missense_Mutation p.G494V 0.27 deleterious(0.02) probably_damaging(1) TCGA-VS-A9U6-01 5 158125720 158125720 T - EBF1 3'UTR 0.21 TCGA-VS-A9U6-01 5 166802318 166802318 C T TENM2 Silent p.D114D 0.30 TCGA-VS-A9U6-01 5 16794786 16794786 T C MYO10 Missense_Mutation p.K146E 0.33 deleterious(0) benign(0.171) TCGA-VS-A9U6-01 5 171849429 171849429 A - SH3PXD2B Frame_Shift_Del p.F49Lfs*47 0.31 TCGA-VS-A9U6-01 5 175955709 175955709 G A RNF44 3'UTR 0.46 TCGA-VS-A9U6-01 5 176733037 176733038 - T MXD3 3'Flank 0.21 TCGA-VS-A9U6-01 5 176778698 176778698 G T LMAN2 5'UTR 0.39 TCGA-VS-A9U6-01 5 176931301 176931301 G T DOK3 Missense_Mutation p.P392T 0.31 deleterious(0.04) benign(0.007) TCGA-VS-A9U6-01 5 176943193 176943193 C T DDX41 Silent p.A100A 0.11 TCGA-VS-A9U6-01 5 178505944 178505944 A G ZNF354C Missense_Mutation p.T171A 0.43 tolerated(0.16) benign(0.009) TCGA-VS-A9U6-01 5 179267916 179267916 C T C5orf45 Missense_Mutation p.V165M 0.30 deleterious(0.02) possibly_damaging(0.76) TCGA-VS-A9U6-01 5 179727872 179727872 G A GFPT2 3'UTR 0.19 TCGA-VS-A9U6-01 5 180627177 180627177 T C TRIM7 Intron 0.47 TCGA-VS-A9U6-01 5 21975205 21975205 G T CDH12 Missense_Mutation p.P174H 0.34 tolerated(0.07) benign(0.432) TCGA-VS-A9U6-01 5 314893 314893 C T PDCD6 3'UTR 0.39 TCGA-VS-A9U6-01 5 32355834 32355834 T - ZFR 3'UTR 0.26 TCGA-VS-A9U6-01 5 34813722 34813723 - A RAI14 Frame_Shift_Ins p.R276Tfs*15 0.26 TCGA-VS-A9U6-01 5 36039601 36039601 C T UGT3A2 Nonsense_Mutation p.W351* 0.36 TCGA-VS-A9U6-01 5 37008133 37008134 - T NIPBL Frame_Shift_Ins p.V1424Cfs*6 0.22 TCGA-VS-A9U6-01 5 40760112 40760113 - A PRKAA1 3'Flank 0.24 TCGA-VS-A9U6-01 5 42718594 42718594 C T GHR Missense_Mutation p.H329Y 0.17 deleterious(0.03) probably_damaging(0.98) TCGA-VS-A9U6-01 5 60839512 60839512 G C ZSWIM6 Missense_Mutation p.D1006H 0.41 deleterious(0) probably_damaging(0.981) TCGA-VS-A9U6-01 5 64020298 64020298 T - SREK1IP1 Frame_Shift_Del p.K129Nfs*29 0.15 TCGA-VS-A9U6-01 5 75919111 75919111 C A F2RL2 5'UTR 0.36 TCGA-VS-A9U6-01 5 76934403 76934403 C - OTP 5'UTR 0.33 TCGA-VS-A9U6-01 5 7827404 7827404 C G ADCY2 3'UTR 0.25 TCGA-VS-A9U6-01 5 80369204 80369204 C T RASGRF2 Missense_Mutation p.R274C 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-VS-A9U6-01 5 85913793 85913794 - A COX7C 5'UTR 0.31 TCGA-VS-A9U6-01 6 10415596 10415596 C T TFAP2A 5'Flank 0.20 TCGA-VS-A9U6-01 6 11723610 11723610 A G ADTRP Silent p.L228L 0.19 TCGA-VS-A9U6-01 6 119150350 119150350 G A MCM9 Silent p.Y463Y 0.44 TCGA-VS-A9U6-01 6 131941768 131941768 C T MED23 Nonsense_Mutation p.W199* 0.25 TCGA-VS-A9U6-01 6 142723797 142723797 T C GPR126 Silent p.T595T 0.33 TCGA-VS-A9U6-01 6 143073595 143073595 T - HIVEP2 3'UTR 0.33 TCGA-VS-A9U6-01 6 148872318 148872318 C G SASH1 3'UTR 0.24 TCGA-VS-A9U6-01 6 158454640 158454640 C T SYNJ2 Silent p.R213R 0.27 TCGA-VS-A9U6-01 6 160679824 160679824 C T SLC22A2 5'UTR 0.40 TCGA-VS-A9U6-01 6 168708137 168708137 G T DACT2 Missense_Mutation p.A767D 0.35 deleterious(0) probably_damaging(0.934) TCGA-VS-A9U6-01 6 169632154 169632154 C T THBS2 Missense_Mutation p.C691Y 0.32 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 6 170591410 170591410 A - DLL1 3'UTR 0.23 TCGA-VS-A9U6-01 6 170892168 170892168 T C PDCD2 Missense_Mutation p.Y212C 0.33 tolerated(0.11) benign(0.205) TCGA-VS-A9U6-01 6 17675555 17675555 G T NUP153 Missense_Mutation p.P210T 0.25 tolerated(0.14) possibly_damaging(0.458) TCGA-VS-A9U6-01 6 17688741 17688741 C T NUP153 Missense_Mutation p.E74K 0.34 deleterious(0.02) benign(0.222) TCGA-VS-A9U6-01 6 17817265 17817265 C G KIF13A Missense_Mutation p.Q662H 0.25 tolerated(0.08) benign(0.375) TCGA-VS-A9U6-01 6 26217264 26217264 G T HIST1H2AE Missense_Mutation p.R21M 0.16 deleterious_low_confidence(0) unknown(0) TCGA-VS-A9U6-01 6 26385290 26385290 G T BTN2A2 Nonsense_Mutation p.G48* 0.20 TCGA-VS-A9U6-01 6 28104852 28104852 C T ZKSCAN8 5'Flank 0.22 TCGA-VS-A9U6-01 6 28195281 28195281 A G ZSCAN9 Missense_Mutation p.E140G 0.19 deleterious(0.02) possibly_damaging(0.883) TCGA-VS-A9U6-01 6 30071229 30071229 G A TRIM31 3'UTR 0.42 TCGA-VS-A9U6-01 6 31602131 31602131 G A PRRC2A Missense_Mutation p.R1613H 0.27 unknown(0) TCGA-VS-A9U6-01 6 31974231 31974231 T G AL645922.1 Intron 0.25 TCGA-VS-A9U6-01 6 32007854 32007854 G C CYP21A2 Missense_Mutation p.E271Q 0.31 tolerated(0.19) benign(0.403) TCGA-VS-A9U6-01 6 32008258 32008258 G A CYP21A2 Missense_Mutation p.D339N 0.27 tolerated(0.1) possibly_damaging(0.521) TCGA-VS-A9U6-01 6 32008536 32008536 G A CYP21A2 Missense_Mutation p.E404K 0.14 tolerated(0.1) benign(0.168) TCGA-VS-A9U6-01 6 32012802 32012802 G C TNXB Silent p.L65L 0.20 TCGA-VS-A9U6-01 6 32023892 32023892 C T TNXB Missense_Mutation p.E2735K 0.84 possibly_damaging(0.465) TCGA-VS-A9U6-01 6 32939547 32939547 G A BRD2 5'UTR 0.22 TCGA-VS-A9U6-01 6 33132051 33132051 C T COL11A2 Missense_Mutation p.G1602D 0.20 unknown(0) TCGA-VS-A9U6-01 6 33177699 33177699 G T RING1 Nonsense_Mutation p.E83* 0.18 TCGA-VS-A9U6-01 6 33693346 33693346 C T IP6K3 Missense_Mutation p.V213I 0.15 tolerated(1) benign(0.014) TCGA-VS-A9U6-01 6 34003722 34003722 G A GRM4 Missense_Mutation p.P722L 0.29 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 6 34008402 34008402 C T GRM4 Missense_Mutation p.R431H 0.14 tolerated(0.29) possibly_damaging(0.677) TCGA-VS-A9U6-01 6 36199588 36199588 A - BRPF3 3'UTR 0.43 TCGA-VS-A9U6-01 6 36259299 36259299 A T PNPLA1 Silent p.S136S 0.15 TCGA-VS-A9U6-01 6 36989304 36989304 T C FGD2 Missense_Mutation p.I417T 0.25 deleterious(0) possibly_damaging(0.608) TCGA-VS-A9U6-01 6 38645123 38645123 T C GLO1 Missense_Mutation p.D168G 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 6 41567066 41567066 C T FOXP4 3'UTR 0.20 TCGA-VS-A9U6-01 6 42848635 42848635 G A RPL7L1 Silent p.L17L 0.17 TCGA-VS-A9U6-01 6 43266241 43266241 T C SLC22A7 Missense_Mutation p.C49R 0.24 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U6-01 6 46690593 46690593 G C PLA2G7 Silent p.L12L 0.45 TCGA-VS-A9U6-01 6 53788264 53788264 T C LRRC1 3'UTR 0.22 TCGA-VS-A9U6-01 6 5431307 5431307 C A FARS2 Missense_Mutation p.P269H 0.31 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 6 56362694 56362695 - T DST Frame_Shift_Ins p.T4062Nfs*23 0.28 TCGA-VS-A9U6-01 6 56500396 56500396 C T DST Silent p.Q522Q 0.41 TCGA-VS-A9U6-01 6 56516039 56516039 C T DST Silent p.P195P 0.16 TCGA-VS-A9U6-01 6 5999267 5999267 G A NRN1 Missense_Mutation p.A124V 0.16 tolerated(0.66) benign(0.011) TCGA-VS-A9U6-01 6 73919673 73919673 A G RP11-257K9.8 3'UTR 0.18 TCGA-VS-A9U6-01 6 76405615 76405615 G C SENP6 Missense_Mutation p.R724T 0.34 deleterious(0) benign(0.245) TCGA-VS-A9U6-01 6 76407199 76407199 G C SENP6 Missense_Mutation p.E752Q 0.24 tolerated(0.91) probably_damaging(0.955) TCGA-VS-A9U6-01 6 88229955 88229955 T - RARS2 Frame_Shift_Del p.K352Sfs*10 0.14 TCGA-VS-A9U6-01 7 101187286 101187286 G T COL26A1 Silent p.P204P 0.18 TCGA-VS-A9U6-01 7 101845083 101845083 G A CUX1 Missense_Mutation p.A847T 0.25 tolerated(0.37) unknown(0) TCGA-VS-A9U6-01 7 103835611 103835611 T C ORC5 Missense_Mutation p.Y178C 0.31 deleterious(0.01) benign(0.371) TCGA-VS-A9U6-01 7 106508672 106508672 C T PIK3CG Silent p.I222I 0.21 TCGA-VS-A9U6-01 7 107262209 107262209 C - BCAP29 3'UTR 0.26 TCGA-VS-A9U6-01 7 107420179 107420179 G T SLC26A3 Missense_Mutation p.N447K 0.32 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 7 121756815 121756815 C T AASS Splice_Site p.X256_splice 0.24 TCGA-VS-A9U6-01 7 122342106 122342106 C G RNF148 Missense_Mutation p.K233N 0.33 deleterious(0.01) benign(0.244) TCGA-VS-A9U6-01 7 127222533 127222533 A G GCC1 Silent p.P621P 0.17 TCGA-VS-A9U6-01 7 134644755 134644755 G A CALD1 Missense_Mutation p.A698T 0.22 deleterious(0.04) possibly_damaging(0.798) TCGA-VS-A9U6-01 7 135047371 135047371 T - CNOT4 3'UTR 0.30 TCGA-VS-A9U6-01 7 135330217 135330217 T C NUP205 Silent p.F1895F 0.29 TCGA-VS-A9U6-01 7 142561852 142561852 C T EPHB6 Silent p.R98R 0.48 TCGA-VS-A9U6-01 7 142962228 142962228 G A GSTK1 Missense_Mutation p.D143N 0.24 deleterious(0.01) possibly_damaging(0.728) TCGA-VS-A9U6-01 7 150759098 150759098 C T SLC4A2 Silent p.P8P 0.32 TCGA-VS-A9U6-01 7 150768530 150768530 C T SLC4A2 Missense_Mutation p.R677W 0.23 deleterious(0) benign(0.298) TCGA-VS-A9U6-01 7 22206750 22206750 G A RAPGEF5 Silent p.D254D 0.25 TCGA-VS-A9U6-01 7 2297027 2297027 C A SNX8 Silent p.V369V 0.32 TCGA-VS-A9U6-01 7 27145901 27145901 G - HOXA3 3'UTR 0.09 TCGA-VS-A9U6-01 7 31377266 31377266 G A NEUROD6 3'UTR 0.40 TCGA-VS-A9U6-01 7 47870815 47870815 C A PKD1L1 Missense_Mutation p.R2158M 0.30 deleterious(0) probably_damaging(0.979) TCGA-VS-A9U6-01 7 4796794 4796794 C - FOXK1 Frame_Shift_Del p.F409Sfs*18 0.25 TCGA-VS-A9U6-01 7 4901085 4901085 G A PAPOLB Silent p.C118C 0.39 TCGA-VS-A9U6-01 7 54820004 54820004 A C SEC61G 3'UTR 0.20 TCGA-VS-A9U6-01 7 57529540 57529540 A G ZNF716 Missense_Mutation p.H458R 0.25 deleterious(0) benign(0.171) TCGA-VS-A9U6-01 7 64293729 64293729 A T ZNF138 3'Flank 0.24 TCGA-VS-A9U6-01 7 6630082 6630082 C A C7orf26 Silent p.P56P 0.06 TCGA-VS-A9U6-01 7 71571201 71571201 C T CALN1 Missense_Mutation p.R108H 0.20 deleterious(0) probably_damaging(0.993) TCGA-VS-A9U6-01 7 73150580 73150580 T - ABHD11 3'UTR 0.32 TCGA-VS-A9U6-01 7 73536452 73536452 C T LIMK1 3'UTR 0.20 TCGA-VS-A9U6-01 7 74015482 74015482 C T GTF2IRD1 Missense_Mutation p.A946V 0.42 tolerated(0.21) benign(0.04) TCGA-VS-A9U6-01 7 75615558 75615558 G T POR Missense_Mutation p.G633W 0.38 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 7 76071304 76071304 G A ZP3 Silent p.L402L 0.50 TCGA-VS-A9U6-01 7 77569580 77569581 - T PHTF2 Frame_Shift_Ins p.L536Ffs*10 0.40 TCGA-VS-A9U6-01 7 87536670 87536670 A - DBF4 Frame_Shift_Del p.K408Sfs*16 0.22 TCGA-VS-A9U6-01 7 92735258 92735258 T - SAMD9 Frame_Shift_Del p.E52Nfs*16 0.23 TCGA-VS-A9U6-01 7 94293027 94293027 G T PEG10 Missense_Mutation p.E53D 0.30 tolerated_low_confidence(0.24) benign(0.016) TCGA-VS-A9U6-01 7 99030942 99030942 G A ATP5J2-PTCD1 Missense_Mutation p.R234W 0.17 deleterious(0) probably_damaging(1) TCGA-VS-A9U6-01 7 99145096 99145096 C T FAM200A Missense_Mutation p.R312K 0.29 tolerated(0.06) benign(0.007) TCGA-VS-A9U6-01 7 99632054 99632054 G T ZKSCAN1 3'UTR 0.46 TCGA-VS-A9U6-01 7 99701731 99701731 T - AP4M1 Frame_Shift_Del p.L189Wfs*10 0.24 TCGA-VS-A9U6-01 8 100168789 100168789 T G VPS13B Missense_Mutation p.F676V 0.10 tolerated(0.57) possibly_damaging(0.879) TCGA-VS-A9U6-01 8 102217704 102217704 G A ZNF706 5'Flank 0.50 TCGA-VS-A9U6-01 8 116430574 116430574 T C TRPS1 Missense_Mutation p.Y936C 0.59 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U6-01 8 124826192 124826193 - T FAM91A1 3'UTR 0.16 TCGA-VS-A9U6-01 8 13162711 13162711 C T DLC1 Intron 0.09 TCGA-VS-A9U6-01 8 132052211 132052211 G A ADCY8 Silent p.G123G 0.18 TCGA-VS-A9U6-01 8 133099967 133099967 G A HHLA1 Silent p.F239F 0.24 TCGA-VS-A9U6-01 8 133650229 133650229 G T LRRC6 Silent p.S127S 0.19 TCGA-VS-A9U6-01 8 136470166 136470168 CTT - KHDRBS3 In_Frame_Del p.F20del 0.44 TCGA-VS-A9U6-01 8 142367511 142367511 G A GPR20 Silent p.C171C 0.21 TCGA-VS-A9U6-01 8 145006971 145006971 C T PLEC Missense_Mutation p.R713Q 0.36 unknown(0) TCGA-VS-A9U6-01 8 145693964 145693964 C T KIFC2 Nonsense_Mutation p.Q312* 0.28 TCGA-VS-A9U6-01 8 22412376 22412376 G T SORBS3 Missense_Mutation p.V35L 0.70 deleterious(0.01) benign(0.244) TCGA-VS-A9U6-01 8 24170973 24170973 G A ADAM28 Silent p.E152E 0.70 TCGA-VS-A9U6-01 8 25266373 25266373 T A DOCK5 Missense_Mutation p.L1774Q 0.21 deleterious(0.02) probably_damaging(0.976) TCGA-VS-A9U6-01 8 30732521 30732521 C T TEX15 RNA 0.17 TCGA-VS-A9U6-01 8 37701261 37701261 A - BRF2 3'UTR 0.65 TCGA-VS-A9U6-01 8 52325801 52325801 C G PXDNL Missense_Mutation p.A605P 0.57 tolerated(0.39) benign(0.025) TCGA-VS-A9U6-01 8 52567285 52567285 C T PXDNL Missense_Mutation p.G67E 0.57 tolerated(0.32) benign(0.008) TCGA-VS-A9U6-01 8 57076219 57076220 TG - PLAG1 3'UTR 0.38 TCGA-VS-A9U6-01 8 57354087 57354087 C A PENK Missense_Mutation p.S183I 0.25 tolerated(0.22) benign(0.01) TCGA-VS-A9U6-01 8 66988980 66988980 G A DNAJC5B Missense_Mutation p.A69T 0.28 tolerated(0.21) benign(0.005) TCGA-VS-A9U6-01 8 67341990 67341990 C T RRS1 Silent p.H208H 0.50 TCGA-VS-A9U6-01 8 67923049 67923049 C A PPP1R42 Missense_Mutation p.L151F 0.44 deleterious(0.01) probably_damaging(0.981) TCGA-VS-A9U6-01 8 87447864 87447864 T C WWP1 Silent p.S560S 0.08 TCGA-VS-A9U6-01 9 103339353 103339353 G A TMEFF1 3'UTR 0.50 TCGA-VS-A9U6-01 9 104499569 104499569 C G GRIN3A Missense_Mutation p.E231D 0.40 tolerated(0.56) benign(0.055) TCGA-VS-A9U6-01 9 135205499 135205499 G A SETX Missense_Mutation p.P496S 0.72 deleterious(0.04) probably_damaging(1) TCGA-VS-A9U6-01 9 139273627 139273627 G A SNAPC4 Silent p.T884T 0.13 TCGA-VS-A9U6-01 9 139735533 139735533 C T RABL6 3'UTR 0.24 TCGA-VS-A9U6-01 9 139818391 139818393 TCT - TRAF2 In_Frame_Del p.F411del 0.15 TCGA-VS-A9U6-01 9 37537815 37537815 G A FBXO10 Silent p.N237N 0.53 TCGA-VS-A9U6-01 9 5968843 5968843 T C KIAA2026 Missense_Mutation p.Y463C 0.33 deleterious(0) probably_damaging(0.996) TCGA-VS-A9U6-01 9 71396408 71396409 - A FAM122A 3'UTR 0.25 TCGA-VS-A9U6-01 9 90502290 90502290 C T SPATA31E1 Missense_Mutation p.T963I 0.53 deleterious(0) benign(0.335) TCGA-VS-A9U6-01 9 98684681 98684681 C T ERCC6L2 Missense_Mutation p.A476V 0.53 tolerated(0.3) benign(0.002) TCGA-VS-A9U6-01 X 10046895 10046895 A T WWC3 Missense_Mutation p.I93L 0.20 deleterious(0.03) probably_damaging(0.985) TCGA-VS-A9U6-01 X 100515562 100515562 C A DRP2 Silent p.P942P 0.40 TCGA-VS-A9U6-01 X 102472073 102472073 G A BEX4 3'UTR 0.45 TCGA-VS-A9U6-01 X 107402808 107402808 G A COL4A6 Missense_Mutation p.R1567C 0.46 benign(0.124) TCGA-VS-A9U6-01 X 109441493 109441493 A - AMMECR1 3'UTR 0.38 TCGA-VS-A9U6-01 X 152848247 152848247 T C ATP2B3 3'UTR 0.48 TCGA-VS-A9U6-01 X 17818259 17818259 T - RAI2 3'UTR 0.37 TCGA-VS-A9U6-01 X 17878809 17878809 G A RAI2 Intron 0.23 TCGA-VS-A9U6-01 X 26211981 26211981 G A MAGEB6 Silent p.K6K 0.23 TCGA-VS-A9U6-01 X 2779654 2779654 C A GYG2 Missense_Mutation p.P341Q 0.27 deleterious(0.02) benign(0.157) TCGA-VS-A9U6-01 X 3002630 3002630 C T ARSF Silent p.H251H 0.64 TCGA-VS-A9U6-01 X 30848737 30848737 T C TAB3 3'UTR 0.29 TCGA-VS-A9U6-01 X 39911083 39911083 G A BCOR 3'UTR 0.25 TCGA-VS-A9U6-01 X 48382138 48382138 G A EBP 5'UTR 0.23 TCGA-VS-A9U6-01 X 51645329 51645329 C T MAGED1 3'UTR 0.33 TCGA-VS-A9U6-01 X 53272561 53272561 C T IQSEC2 Missense_Mutation p.V948M 0.33 deleterious(0) probably_damaging(0.919) TCGA-VS-A9U6-01 X 6069097 6069097 G T NLGN4X Silent p.T137T 0.49 TCGA-VS-A9U6-01 X 70824002 70824002 C T ACRC Missense_Mutation p.S292L 0.30 unknown(0) TCGA-VS-A9U6-01 X 73068903 73068903 G T XIST RNA 0.46 TCGA-VS-A9U6-01 X 90690734 90690734 C T PABPC5 Missense_Mutation p.P53L 0.38 tolerated(0.43) benign(0.004) TCGA-VS-A9U6-01 X 92966184 92966184 T - FAM133A 3'UTR 0.37 TCGA-VS-A9U6-01 X 9660223 9660223 T C TBL1X Silent p.L274L 0.20 TCGA-VS-A9U7-01 10 105798851 105798851 G A COL17A1 Silent p.G975G 0.49 TCGA-VS-A9U7-01 10 112581069 112581069 G C RBM20 Missense_Mutation p.E898Q 0.33 deleterious(0) possibly_damaging(0.701) TCGA-VS-A9U7-01 10 116225511 116225511 G A ABLIM1 Missense_Mutation p.R463C 0.34 deleterious(0.01) possibly_damaging(0.894) TCGA-VS-A9U7-01 10 119134417 119134417 C T PDZD8 Missense_Mutation p.E108K 0.35 deleterious(0.01) benign(0.055) TCGA-VS-A9U7-01 10 32561029 32561029 C G EPC1 Missense_Mutation p.E667Q 0.49 tolerated(0.13) possibly_damaging(0.782) TCGA-VS-A9U7-01 10 50684302 50684302 C T ERCC6 Missense_Mutation p.D781N 0.43 tolerated(0.23) benign(0.02) TCGA-VS-A9U7-01 10 69676305 69676305 G A SIRT1 Silent p.V733V 0.32 TCGA-VS-A9U7-01 10 75542709 75542709 G C CHCHD1 Intron 0.33 TCGA-VS-A9U7-01 10 75620640 75620640 C A CAMK2G Missense_Mutation p.Q56H 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VS-A9U7-01 10 79741276 79741276 G A POLR3A Silent p.I1267I 0.50 TCGA-VS-A9U7-01 10 88768670 88768670 G A RP11-96C23.10 3'Flank 0.36 TCGA-VS-A9U7-01 10 91198491 91198491 G C SLC16A12 Missense_Mutation p.L300V 0.40 tolerated(0.19) benign(0.033) TCGA-VS-A9U7-01 11 102708123 102708123 C G MMP3 Missense_Mutation p.E413D 0.69 deleterious(0.04) possibly_damaging(0.681) TCGA-VS-A9U7-01 11 119210455 119210455 G A C1QTNF5 Silent p.F106F 0.70 TCGA-VS-A9U7-01 11 121416007 121416007 G A SORL1 Silent p.G640G 0.75 TCGA-VS-A9U7-01 11 26587177 26587177 G C MUC15 Missense_Mutation p.L104V 0.28 tolerated_low_confidence(1) benign(0.043) TCGA-VS-A9U7-01 11 61724432 61724432 C T BEST1 Nonsense_Mutation p.R140* 0.17 TCGA-VS-A9U7-01 11 64336250 64336250 G A SLC22A11 Missense_Mutation p.R461Q 0.29 deleterious(0) probably_damaging(0.993) TCGA-VS-A9U7-01 11 64337224 64337224 C G SLC22A11 Missense_Mutation p.L495V 0.15 tolerated(0.12) possibly_damaging(0.536) TCGA-VS-A9U7-01 11 65269916 65269916 G T MALAT1 RNA 0.37 TCGA-VS-A9U7-01 11 65270077 65270077 G C MALAT1 RNA 0.39 TCGA-VS-A9U7-01 11 76873269 76873269 G C MYO7A Missense_Mutation p.D483H 0.15 tolerated(0.11) benign(0.426) TCGA-VS-A9U7-01 12 10460580 10460580 C G KLRD1 5'UTR 0.68 TCGA-VS-A9U7-01 12 122218349 122218349 C T TMEM120B 3'UTR 0.30 TCGA-VS-A9U7-01 12 129566466 129566466 C T TMEM132D Silent p.A587A 0.29 TCGA-VS-A9U7-01 12 132281876 132281876 G A SFSWAP Silent p.E948E 0.31 TCGA-VS-A9U7-01 12 133795472 133795472 C G ANHX Nonstop_Mutation p.*380Sext*30 0.25 TCGA-VS-A9U7-01 12 3647827 3647827 C T PRMT8 Intron 0.75 TCGA-VS-A9U7-01 12 40085900 40085900 C T C12orf40 Missense_Mutation p.S466F 0.51 deleterious(0.03) benign(0.125) TCGA-VS-A9U7-01 12 44167789 44167789 G A IRAK4 Missense_Mutation p.E225K 0.75 tolerated(0.17) benign(0.065) TCGA-VS-A9U7-01 12 62104139 62104139 C T FAM19A2 3'UTR 0.39 TCGA-VS-A9U7-01 12 76747468 76747468 C T OSBPL8 3'UTR 0.34 TCGA-VS-A9U7-01 12 96673390 96673390 G C CDK17 3'UTR 0.29 TCGA-VS-A9U7-01 12 9913426 9913426 C G CD69 5'UTR 0.76 TCGA-VS-A9U7-01 13 31736419 31736419 G A HSPH1 5'Flank 0.56 TCGA-VS-A9U7-01 13 41791169 41791169 C G MTRF1 3'UTR 0.07 TCGA-VS-A9U7-01 13 41885674 41885674 G T NAA16 Missense_Mutation p.V4L 0.33 tolerated_low_confidence(0.25) benign(0.016) TCGA-VS-A9U7-01 13 43597830 43597830 C A DNAJC15 Nonsense_Mutation p.S23* 0.36 TCGA-VS-A9U7-01 13 86368023 86368023 C G SLITRK6 3'UTR 0.59 TCGA-VS-A9U7-01 14 101350234 101350234 C T RTL1 Missense_Mutation p.G298S 0.75 tolerated(0.44) benign(0.002) TCGA-VS-A9U7-01 14 105052798 105052798 G C C14orf180 Missense_Mutation p.D11H 0.62 deleterious(0.04) possibly_damaging(0.612) TCGA-VS-A9U7-01 14 20851675 20851675 G A TEP1 Missense_Mutation p.S1280L 0.10 deleterious(0) probably_damaging(0.99) TCGA-VS-A9U7-01 14 21944994 21944994 C G RAB2B Missense_Mutation p.G13A 0.47 deleterious(0.01) possibly_damaging(0.639) TCGA-VS-A9U7-01 14 22476215 22476215 G C TRAV19 Missense_Mutation p.D49H 0.33 tolerated(0.19) possibly_damaging(0.569) TCGA-VS-A9U7-01 14 54863789 54863789 G A CDKN3 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-VS-A9U7-01 14 55255633 55255633 G C SAMD4A Splice_Site p.X710_splice 0.46 TCGA-VS-A9U7-01 14 57876151 57876151 C T NAA30 Missense_Mutation p.L336F 0.04 deleterious(0) possibly_damaging(0.888) TCGA-VS-A9U7-01 14 60427654 60427654 G A LRRC9 Missense_Mutation p.E368K 0.30 tolerated(0.08) benign(0.086) TCGA-VS-A9U7-01 14 62162357 62162357 G T HIF1A 5'Flank 0.29 TCGA-VS-A9U7-01 14 68260322 68260322 C T ZFYVE26 Intron 0.39 TCGA-VS-A9U7-01 14 70263720 70263720 G C SLC10A1 Missense_Mutation p.I51M 0.43 deleterious(0.01) probably_damaging(0.927) TCGA-VS-A9U7-01 14 73718243 73718243 C T PAPLN Intron 0.36 TCGA-VS-A9U7-01 15 102358777 102358777 C T OR4F15 Missense_Mutation p.L130F 0.32 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-VS-A9U7-01 15 23200251 23200251 C T WHAMMP3 RNA 0.27 TCGA-VS-A9U7-01 15 33954675 33954675 G C RYR3 Missense_Mutation p.K1648N 0.10 benign(0.038) TCGA-VS-A9U7-01 15 34434324 34434324 G A KATNBL1 3'UTR 0.31 TCGA-VS-A9U7-01 15 34525955 34525955 G A SLC12A6 3'UTR 0.37 TCGA-VS-A9U7-01 15 40558287 40558287 G T PAK6 Missense_Mutation p.G150V 0.40 deleterious(0.02) benign(0.227) TCGA-VS-A9U7-01 15 48052508 48052508 G A SEMA6D Silent p.R39R 0.30 TCGA-VS-A9U7-01 15 49868982 49868982 C T FAM227B Missense_Mutation p.A168T 0.38 deleterious(0) probably_damaging(1) TCGA-VS-A9U7-01 15 64050523 64050523 C T HERC1 Missense_Mutation p.D358N 0.44 benign(0.004) TCGA-VS-A9U7-01 15 67529009 67529009 C T AAGAB Missense_Mutation p.E75K 0.39 deleterious(0.01) possibly_damaging(0.497) TCGA-VS-A9U7-01 15 75248428 75248428 G A RPP25 Missense_Mutation p.A166V 0.43 tolerated(0.16) benign(0.001) TCGA-VS-A9U7-01 15 77317860 77317860 C G PSTPIP1 Nonsense_Mutation p.S90* 0.50 TCGA-VS-A9U7-01 15 77407424 77407424 C T PEAK1 Missense_Mutation p.E1439K 0.43 tolerated(0.57) benign(0.08) TCGA-VS-A9U7-01 15 78572661 78572661 G A DNAJA4 Silent p.Q380Q 0.34 TCGA-VS-A9U7-01 15 99434829 99434829 G C IGF1R Missense_Mutation p.E306Q 0.79 tolerated(0.15) possibly_damaging(0.79) TCGA-VS-A9U7-01 16 30678644 30678644 G A FBRS Missense_Mutation p.D627N 0.41 possibly_damaging(0.794) TCGA-VS-A9U7-01 16 30748778 30748778 C T SRCAP Missense_Mutation p.P2473S 0.05 unknown(0) TCGA-VS-A9U7-01 16 30748790 30748790 C T SRCAP Missense_Mutation p.L2477F 0.06 unknown(0) TCGA-VS-A9U7-01 16 31131776 31131776 G A KAT8 Missense_Mutation p.E135K 0.52 tolerated(0.1) benign(0.03) TCGA-VS-A9U7-01 16 31926105 31926105 G C ZNF267 Missense_Mutation p.E179Q 0.04 tolerated(0.84) benign(0) TCGA-VS-A9U7-01 16 57513357 57513357 G A DOK4 Silent p.L21L 0.40 TCGA-VS-A9U7-01 16 88496294 88496294 G C ZNF469 Missense_Mutation p.E806Q 0.30 benign(0.29) TCGA-VS-A9U7-01 16 89226759 89226759 C T ACSF3 3'Flank 0.09 TCGA-VS-A9U7-01 17 10369689 10369689 G C MYH4 Silent p.P83P 0.10 TCGA-VS-A9U7-01 17 11872614 11872614 C G DNAH9 Intron 0.15 TCGA-VS-A9U7-01 17 15643435 15643435 C T TBC1D26 Silent p.I173I 0.47 TCGA-VS-A9U7-01 17 18193944 18193944 C T TOP3A Silent p.V508V 0.46 TCGA-VS-A9U7-01 17 2239366 2239366 G A TSR1 Missense_Mutation p.R56C 0.15 deleterious(0) possibly_damaging(0.772) TCGA-VS-A9U7-01 17 27899059 27899059 G A TP53I13 Missense_Mutation p.R166Q 0.57 tolerated(0.46) benign(0.007) TCGA-VS-A9U7-01 17 27949779 27949779 G A CORO6 5'UTR 0.40 TCGA-VS-A9U7-01 17 30932174 30932174 A - MYO1D Frame_Shift_Del p.F932Sfs*19 0.36 TCGA-VS-A9U7-01 17 32965729 32965729 G A TMEM132E 3'UTR 0.36 TCGA-VS-A9U7-01 17 3301027 3301027 G C OR1E1 Silent p.L226L 0.35 TCGA-VS-A9U7-01 17 39881183 39881183 C G HAP1 Missense_Mutation p.E544Q 0.41 deleterious(0) possibly_damaging(0.607) TCGA-VS-A9U7-01 17 40737230 40737230 G A FAM134C Nonsense_Mutation p.R214* 0.38 TCGA-VS-A9U7-01 17 41244882 41244882 G C BRCA1 Missense_Mutation p.S889C 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-VS-A9U7-01 17 43005765 43005765 C G KIF18B Missense_Mutation p.L635F 0.18 tolerated(0.73) benign(0.252) TCGA-VS-A9U7-01 17 4510743 4510743 C T SMTNL2 Silent p.Y449Y 0.22 TCGA-VS-A9U7-01 17 46690268 46690268 C A HOXB8 3'UTR 0.46 TCGA-VS-A9U7-01 17 46840309 46840309 G T TTLL6 3'UTR 0.28 TCGA-VS-A9U7-01 17 4996728 4996728 C G ZFP3 3'UTR 0.21 TCGA-VS-A9U7-01 17 59557484 59557484 G C TBX4 Missense_Mutation p.M275I 0.23 deleterious(0.02) benign(0.002) TCGA-VS-A9U7-01 17 61780921 61780921 G A STRADA 3'UTR 0.11 TCGA-VS-A9U7-01 17 6358700 6358700 G A PITPNM3 Silent p.L961L 0.24 TCGA-VS-A9U7-01 17 65978478 65978478 G A BPTF 3'UTR 0.47 TCGA-VS-A9U7-01 17 6941936 6941936 G A SLC16A13 Missense_Mutation p.G270E 0.34 deleterious(0) probably_damaging(1) TCGA-VS-A9U7-01 17 7475224 7475224 T A SENP3 Intron 0.24 TCGA-VS-A9U7-01 17 79079898 79079898 C T BAIAP2 Missense_Mutation p.S430F 0.47 deleterious(0) probably_damaging(0.988) TCGA-VS-A9U7-01 17 80010000 80010000 G C GPS1 5'UTR 0.30 TCGA-VS-A9U7-01 18 56246783 56246783 C T ALPK2 Missense_Mutation p.E409K 0.13 deleterious(0.02) possibly_damaging(0.737) TCGA-VS-A9U7-01 18 5892065 5892065 C G TMEM200C 5'UTR 0.64 TCGA-VS-A9U7-01 18 67992820 67992820 G A SOCS6 Missense_Mutation p.D306N 0.24 tolerated(0.08) benign(0.046) TCGA-VS-A9U7-01 18 7231475 7231475 G T LRRC30 Silent p.V113V 0.33 TCGA-VS-A9U7-01 19 11144808 11144808 G A SMARCA4 Missense_Mutation p.E1295K 0.54 probably_damaging(0.995) TCGA-VS-A9U7-01 19 15132178 15132178 G A CCDC105 Silent p.A296A 0.21 TCGA-VS-A9U7-01 19 21909683 21909683 C T ZNF100 Missense_Mutation p.M477I 0.40 tolerated(0.42) benign(0.003) TCGA-VS-A9U7-01 19 2916228 2916228 G C ZNF57 Missense_Mutation p.D95H 0.07 deleterious(0.03) benign(0.066) TCGA-VS-A9U7-01 19 36223451 36223451 G A KMT2B Missense_Mutation p.E2001K 0.73 possibly_damaging(0.899) TCGA-VS-A9U7-01 19 36223769 36223769 G A KMT2B Missense_Mutation p.E2107K 0.70 possibly_damaging(0.899) TCGA-VS-A9U7-01 19 4543339 4543339 C A SEMA6B 3'UTR 0.08 TCGA-VS-A9U7-01 19 50753822 50753822 G A MYH14 Silent p.P569P 0.67 TCGA-VS-A9U7-01 19 7794149 7794149 G A CLEC4G 3'UTR 0.39 TCGA-VS-A9U7-01 1 100488276 100488276 C T SLC35A3 3'UTR 0.12 TCGA-VS-A9U7-01 1 111660554 111660554 G A DRAM2 3'UTR 0.45 TCGA-VS-A9U7-01 1 11580830 11580830 G C PTCHD2 Missense_Mutation p.D763H 0.19 deleterious(0) probably_damaging(1) TCGA-VS-A9U7-01 1 151220726 151220726 C T PIP5K1A 3'Flank 0.34 TCGA-VS-A9U7-01 1 153777345 153777345 G C GATAD2B 3'UTR 0.43 TCGA-VS-A9U7-01 1 155429672 155429672 C T ASH1L Missense_Mutation p.D1668N 0.41 deleterious_low_confidence(0.01) benign(0.08) TCGA-VS-A9U7-01 1 155630973 155630973 C G YY1AP1 Intron 0.36 TCGA-VS-A9U7-01 1 1560694 1560694 G T MIB2 Silent p.V365V 0.50 TCGA-VS-A9U7-01 1 1560701 1560701 G C MIB2 Missense_Mutation p.D368H 0.46 deleterious(0.03) probably_damaging(0.914) TCGA-VS-A9U7-01 1 161203042 161203042 C A NR1I3 Nonsense_Mutation p.E109* 0.53 TCGA-VS-A9U7-01 1 185109131 185109131 C T TRMT1L Silent p.L361L 0.49 TCGA-VS-A9U7-01 1 185154055 185154055 A C SWT1 Missense_Mutation p.Q474P 0.05 deleterious(0) probably_damaging(1) TCGA-VS-A9U7-01 1 197030938 197030938 G C F13B Missense_Mutation p.Q143E 0.43 tolerated(0.08) benign(0.17) TCGA-VS-A9U7-01 1 203765711 203765711 G C ZBED6 5'UTR 0.46 TCGA-VS-A9U7-01 1 222906082 222906082 C T BROX 3'UTR 0.46 TCGA-VS-A9U7-01 1 35370618 35370618 C T DLGAP3 Missense_Mutation p.D123N 0.50 deleterious(0) probably_damaging(0.977) TCGA-VS-A9U7-01 1 35577389 35577389 G A ZMYM1 Silent p.V326V 0.14 TCGA-VS-A9U7-01 1 3649517 3649517 C T TP73 Silent p.T595T 0.71 TCGA-VS-A9U7-01 1 40538033 40538033 C T CAP1 3'UTR 0.46 TCGA-VS-A9U7-01 1 44432605 44432605 G C IPO13 Missense_Mutation p.E843Q 0.45 deleterious(0.02) benign(0.012) TCGA-VS-A9U7-01 1 52826099 52826099 C T CC2D1B Silent p.L200L 0.48 TCGA-VS-A9U7-01 1 71532649 71532649 C T ZRANB2 Intron 0.19 TCGA-VS-A9U7-01 1 89846049 89846049 G C GBP6 Missense_Mutation p.D244H 0.43 deleterious(0.03) benign(0.005) TCGA-VS-A9U7-01 20 10620525 10620534 AGGCACCAGT - JAG1 Frame_Shift_Del p.Y1090Cfs*27 0.20 TCGA-VS-A9U7-01 20 23804713 23804713 C T CST2 Missense_Mutation p.E124K 0.18 tolerated(0.41) probably_damaging(0.929) TCGA-VS-A9U7-01 20 45131276 45131276 C A ZNF334 Missense_Mutation p.R234S 0.45 tolerated(0.22) benign(0.081) TCGA-VS-A9U7-01 20 51872654 51872654 C G TSHZ2 Missense_Mutation p.S886C 0.33 tolerated(0.2) probably_damaging(0.998) TCGA-VS-A9U7-01 20 56935575 56935575 C T RAB22A 3'UTR 0.30 TCGA-VS-A9U7-01 20 62377665 62377665 C T ZBTB46 3'UTR 0.37 TCGA-VS-A9U7-01 21 34821648 34821648 C G TMEM50B 3'UTR 0.22 TCGA-VS-A9U7-01 21 38390337 38390337 C T RIPPLY3 Missense_Mutation p.L135F 0.31 deleterious(0.01) benign(0.04) TCGA-VS-A9U7-01 21 43543128 43543128 C T UMODL1 Silent p.R1133R 0.26 TCGA-VS-A9U7-01 21 45179227 45179227 C G PDXK 3'UTR 0.16 TCGA-VS-A9U7-01 22 18561178 18561178 C T PEX26 Silent p.L12L 0.32 TCGA-VS-A9U7-01 22 19431110 19431110 G C C22orf39 3'UTR 0.12 TCGA-VS-A9U7-01 22 25320597 25320597 G C SGSM1 3'UTR 0.29 TCGA-VS-A9U7-01 22 30423396 30423396 C T MTMR3 3'UTR 0.33 TCGA-VS-A9U7-01 22 37471257 37471257 C T TMPRSS6 Silent p.G429G 0.43 TCGA-VS-A9U7-01 22 46930450 46930450 G C CELSR1 Nonsense_Mutation p.S873* 0.43 TCGA-VS-A9U7-01 2 100209981 100209981 G A AFF3 Silent p.N739N 0.35 TCGA-VS-A9U7-01 2 100210067 100210067 C G AFF3 Missense_Mutation p.E711Q 0.28 deleterious(0.04) possibly_damaging(0.625) TCGA-VS-A9U7-01 2 109352125 109352125 G A RANBP2 Silent p.L181L 0.38 TCGA-VS-A9U7-01 2 122485422 122485422 C T NIFK Missense_Mutation p.D254N 0.31 tolerated(0.05) benign(0.072) TCGA-VS-A9U7-01 2 122485562 122485562 C G NIFK Intron 0.32 TCGA-VS-A9U7-01 2 14774091 14774091 C A FAM84A 5'UTR 0.11 TCGA-VS-A9U7-01 2 162799348 162799348 G A SLC4A10 Missense_Mutation p.E682K 0.42 tolerated(0.4) benign(0.049) TCGA-VS-A9U7-01 2 175436992 175436992 C T WIPF1 Missense_Mutation p.D181N 0.39 deleterious(0.01) possibly_damaging(0.734) TCGA-VS-A9U7-01 2 176958133 176958133 G A HOXD13 Missense_Mutation p.G172D 0.32 deleterious(0) benign(0.241) TCGA-VS-A9U7-01 2 179606398 179606398 G A TTN Silent p.F3854F 0.16 TCGA-VS-A9U7-01 2 192543117 192543117 G C NABP1 5'Flank 0.46 TCGA-VS-A9U7-01 2 201469520 201469520 C G AOX1 Missense_Mutation p.F257L 0.32 tolerated(0.27) benign(0.002) TCGA-VS-A9U7-01 2 202356819 202356819 C G ALS2CR11 Missense_Mutation p.K1415N 0.13 tolerated(0.11) benign(0.007) TCGA-VS-A9U7-01 2 217537448 217537448 C G IGFBP5 3'UTR 0.46 TCGA-VS-A9U7-01 2 238642441 238642441 C T LRRFIP1 Intron 0.64 TCGA-VS-A9U7-01 2 5836232 5836232 G A SOX11 3'UTR 0.21 TCGA-VS-A9U7-01 3 115382716 115382716 C T GAP43 Nonsense_Mutation p.R31* 0.33 TCGA-VS-A9U7-01 3 119305187 119305187 G A ADPRH Nonsense_Mutation p.W118* 0.25 TCGA-VS-A9U7-01 3 120360478 120360478 C T HGD Silent p.L279L 0.48 TCGA-VS-A9U7-01 3 126723967 126723967 C T PLXNA1 Missense_Mutation p.S593L 0.20 deleterious(0.03) benign(0.002) TCGA-VS-A9U7-01 3 135870638 135870638 C T MSL2 Missense_Mutation p.R362Q 0.20 tolerated(0.53) possibly_damaging(0.587) TCGA-VS-A9U7-01 3 138121394 138121394 C T MRAS 3'UTR 0.15 TCGA-VS-A9U7-01 3 138122583 138122583 C T MRAS 3'UTR 0.14 TCGA-VS-A9U7-01 3 141304932 141304932 G C RASA2 Silent p.L606L 0.31 TCGA-VS-A9U7-01 3 170715722 170715722 C T SLC2A2 Missense_Mutation p.M515I 0.23 deleterious(0.03) benign(0.214) TCGA-VS-A9U7-01 3 180372642 180372642 C T CCDC39 Missense_Mutation p.E280K 0.23 deleterious(0) probably_damaging(0.995) TCGA-VS-A9U7-01 3 182755162 182755162 C T MCCC1 Missense_Mutation p.E480K 0.11 tolerated(0.81) benign(0.02) TCGA-VS-A9U7-01 3 183995159 183995159 G A ECE2 Nonsense_Mutation p.W246* 0.22 TCGA-VS-A9U7-01 3 185216782 185216782 G C TMEM41A 5'UTR 0.14 TCGA-VS-A9U7-01 3 188594867 188594867 C A LPP 3'UTR 0.20 TCGA-VS-A9U7-01 3 195511829 195511829 G C MUC4 Missense_Mutation p.P2208A 0.09 unknown(0) TCGA-VS-A9U7-01 3 36780031 36780031 C A DCLK3 Missense_Mutation p.R40S 0.24 deleterious(0) benign(0.108) TCGA-VS-A9U7-01 3 36898645 36898645 C T TRANK1 Silent p.K812K 0.50 TCGA-VS-A9U7-01 3 48625285 48625285 C T COL7A1 Missense_Mutation p.R933K 0.32 unknown(0) TCGA-VS-A9U7-01 3 48936137 48936137 G C SLC25A20 Missense_Mutation p.L31V 0.40 deleterious(0.01) probably_damaging(0.911) TCGA-VS-A9U7-01 3 50312755 50312755 G A LSMEM2 5'Flank 0.50 TCGA-VS-A9U7-01 3 52836776 52836776 G C ITIH3 Missense_Mutation p.E555Q 0.12 deleterious(0) possibly_damaging(0.474) TCGA-VS-A9U7-01 3 56649180 56649180 G A CCDC66 Missense_Mutation p.E531K 0.39 deleterious(0.03) benign(0.149) TCGA-VS-A9U7-01 3 56649270 56649270 G A CCDC66 Missense_Mutation p.D561N 0.43 deleterious(0.01) probably_damaging(1) TCGA-VS-A9U7-01 3 97194246 97194246 G A EPHA6 Missense_Mutation p.A649T 0.38 tolerated(0.07) benign(0.024) TCGA-VS-A9U7-01 4 100503189 100503189 G T MTTP Silent p.V63V 0.25 TCGA-VS-A9U7-01 4 106159112 106159112 C G TET2 Intron 0.36 TCGA-VS-A9U7-01 4 109588441 109588441 C T OSTC 3'UTR 0.34 TCGA-VS-A9U7-01 4 109588466 109588466 C G OSTC 3'UTR 0.40 TCGA-VS-A9U7-01 4 152682084 152682084 G A PET112 Silent p.F17F 0.43 TCGA-VS-A9U7-01 4 154388407 154388407 G C KIAA0922 Missense_Mutation p.E57Q 0.39 deleterious(0.01) probably_damaging(0.922) TCGA-VS-A9U7-01 4 16504418 16504418 C G LDB2 Missense_Mutation p.E324Q 0.36 deleterious(0) probably_damaging(0.979) TCGA-VS-A9U7-01 4 169085395 169085395 G C ANXA10 Missense_Mutation p.R119T 0.28 deleterious(0.01) possibly_damaging(0.622) TCGA-VS-A9U7-01 4 3138044 3138044 C T HTT Missense_Mutation p.S930L 0.34 benign(0.017) TCGA-VS-A9U7-01 4 3949453 3949453 C T FAM86EP RNA 0.08 TCGA-VS-A9U7-01 4 39868539 39868539 G A PDS5A Missense_Mutation p.R862W 0.39 deleterious(0) probably_damaging(1) TCGA-VS-A9U7-01 4 54231648 54231648 A T SCFD2 Missense_Mutation p.F154Y 0.36 deleterious(0.01) benign(0.055) TCGA-VS-A9U7-01 4 660334 660334 G A PDE6B Silent p.R761R 0.40 TCGA-VS-A9U7-01 4 6622958 6622958 C T MAN2B2 Silent p.I992I 0.44 TCGA-VS-A9U7-01 4 84368150 84368150 G C HELQ Missense_Mutation p.F410L 0.48 deleterious(0) probably_damaging(0.951) TCGA-VS-A9U7-01 4 84382358 84382358 C G MRPS18C 3'UTR 0.38 TCGA-VS-A9U7-01 4 95376521 95376521 C A PDLIM5 Missense_Mutation p.L28M 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A9U7-01 5 137354007 137354007 C G FAM13B Missense_Mutation p.L118F 0.56 tolerated(0.44) benign(0.059) TCGA-VS-A9U7-01 5 140552396 140552396 G C PCDHB7 5'UTR 0.22 TCGA-VS-A9U7-01 5 140953382 140953382 G T DIAPH1 Missense_Mutation p.P679T 0.24 unknown(0) TCGA-VS-A9U7-01 5 177420009 177420009 C G PROP1 Missense_Mutation p.E128Q 0.85 deleterious(0) probably_damaging(0.996) TCGA-VS-A9U7-01 5 24488114 24488114 C T CDH10 Silent p.L675L 0.31 TCGA-VS-A9U7-01 5 36066967 36066967 C G UGT3A2 5'UTR 0.48 TCGA-VS-A9U7-01 5 36877101 36877101 G C NIPBL 5'UTR 0.15 TCGA-VS-A9U7-01 5 65334238 65334238 G A ERBB2IP Missense_Mutation p.E412K 0.43 deleterious(0) probably_damaging(0.998) TCGA-VS-A9U7-01 5 70945934 70945934 C G MCCC2 Nonsense_Mutation p.S471* 0.28 TCGA-VS-A9U7-01 5 75914070 75914070 G A F2RL2 Silent p.L154L 0.33 TCGA-VS-A9U7-01 5 7817080 7817080 C T ADCY2 Silent p.F995F 0.49 TCGA-VS-A9U7-01 6 126249835 126249835 C G NCOA7 Missense_Mutation p.S916C 0.43 deleterious(0.03) benign(0.071) TCGA-VS-A9U7-01 6 28265734 28265734 G C PGBD1 Missense_Mutation p.E279Q 0.18 tolerated_low_confidence(0.17) benign(0.006) TCGA-VS-A9U7-01 6 35047610 35047610 C T ANKS1A Nonsense_Mutation p.Q817* 0.76 TCGA-VS-A9U7-01 6 52269648 52269648 C G PAQR8 3'UTR 0.88 TCGA-VS-A9U7-01 6 52270736 52270736 C G PAQR8 3'UTR 0.83 TCGA-VS-A9U7-01 6 52659012 52659012 G C GSTA1 Missense_Mutation p.L109V 0.49 tolerated(0.23) benign(0.004) TCGA-VS-A9U7-01 7 100086208 100086208 G A NYAP1 Silent p.P288P 0.47 TCGA-VS-A9U7-01 7 100414937 100414937 C T EPHB4 Missense_Mutation p.E489K 0.39 tolerated(0.66) benign(0.266) TCGA-VS-A9U7-01 7 105752719 105752719 G C SYPL1 Intron 0.41 TCGA-VS-A9U7-01 7 144060360 144060360 G C ARHGEF5 Missense_Mutation p.E200Q 0.61 tolerated(0.09) benign(0.153) TCGA-VS-A9U7-01 7 148496387 148496387 G C CUL1 Missense_Mutation p.M719I 0.73 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U7-01 7 150490341 150490341 G C TMEM176B Silent p.L145L 0.60 TCGA-VS-A9U7-01 7 6200463 6200463 C G USP42 3'UTR 0.35 TCGA-VS-A9U7-01 7 6200996 6200996 C T USP42 3'UTR 0.45 TCGA-VS-A9U7-01 7 65446993 65446993 C G GUSB Missense_Mutation p.E60Q 0.12 tolerated(0.22) benign(0.072) TCGA-VS-A9U7-01 7 75156979 75156979 G C PMS2P3 RNA 0.30 TCGA-VS-A9U7-01 7 99097617 99097617 C G ZNF394 Missense_Mutation p.D34H 0.26 deleterious(0.02) possibly_damaging(0.496) TCGA-VS-A9U7-01 8 114389306 114389306 C T CSMD3 Intron 0.28 TCGA-VS-A9U7-01 8 144239806 144239806 G C LY6H Missense_Mutation p.S116C 0.41 deleterious(0.02) possibly_damaging(0.896) TCGA-VS-A9U7-01 8 17819547 17819547 C T PCM1 Missense_Mutation p.S776L 0.41 tolerated(0.05) possibly_damaging(0.745) TCGA-VS-A9U7-01 8 19362758 19362758 C G CSGALNACT1 Missense_Mutation p.E196D 0.40 tolerated(0.31) benign(0.008) TCGA-VS-A9U7-01 8 27297797 27297797 C T PTK2B Silent p.F626F 0.41 TCGA-VS-A9U7-01 8 38708384 38708384 G A TACC1 3'UTR 0.19 TCGA-VS-A9U7-01 8 38874922 38874922 C T ADAM9 Nonsense_Mutation p.Q199* 0.15 TCGA-VS-A9U7-01 8 48731999 48731999 C T PRKDC Missense_Mutation p.E3136K 0.33 probably_damaging(0.959) TCGA-VS-A9U7-01 8 61735248 61735248 G A CHD7 Silent p.G1048G 0.40 TCGA-VS-A9U7-01 9 102778689 102778689 G C ERP44 Missense_Mutation p.A226G 0.26 tolerated(0.11) benign(0.001) TCGA-VS-A9U7-01 9 108136902 108136902 C G SLC44A1 Missense_Mutation p.I506M 0.39 deleterious(0) probably_damaging(1) TCGA-VS-A9U7-01 9 114904676 114904676 G A SUSD1 Silent p.F210F 0.18 TCGA-VS-A9U7-01 9 125486895 125486895 G A OR1L4 Silent p.V209V 0.07 TCGA-VS-A9U7-01 9 125513015 125513015 G C OR1L6 Missense_Mutation p.D297H 0.05 deleterious(0) probably_damaging(0.959) TCGA-VS-A9U7-01 9 131286002 131286002 C T GLE1 Silent p.L258L 0.33 TCGA-VS-A9U7-01 9 134165822 134165822 G C PPAPDC3 Missense_Mutation p.M146I 0.27 tolerated(0.09) benign(0.005) TCGA-VS-A9U7-01 9 32785414 32785414 C T TMEM215 3'UTR 0.36 TCGA-VS-A9U7-01 9 33465891 33465891 C G NOL6 Missense_Mutation p.G790A 0.23 deleterious(0) probably_damaging(0.999) TCGA-VS-A9U7-01 9 34552688 34552688 C G CNTFR Silent p.T311T 0.40 TCGA-VS-A9U7-01 9 34637577 34637577 C T SIGMAR1 Missense_Mutation p.E40K 0.29 tolerated(0.22) benign(0.102) TCGA-VS-A9U7-01 9 35685457 35685457 C T TPM2 Missense_Mutation p.E156K 0.44 deleterious(0) probably_damaging(0.997) TCGA-VS-A9U7-01 9 35685646 35685646 C T TPM2 Silent p.E124E 0.46 TCGA-VS-A9U7-01 9 35800784 35800784 C T NPR2 Missense_Mutation p.P433S 0.44 deleterious(0) probably_damaging(0.957) TCGA-VS-A9U7-01 9 43815820 43815820 C G CNTNAP3B Missense_Mutation p.L192V 0.26 deleterious(0.01) possibly_damaging(0.566) TCGA-VS-A9U7-01 9 77427270 77427270 C T TRPM6 Missense_Mutation p.G463E 0.06 deleterious(0) probably_damaging(1) TCGA-VS-A9U7-01 9 90323183 90323183 C A DAPK1 3'UTR 0.08 TCGA-VS-A9U7-01 X 104463650 104463650 T G TEX13A Missense_Mutation p.H409P 0.09 deleterious(0.02) benign(0.006) TCGA-VS-A9U7-01 X 119694219 119694219 G T CUL4B Missense_Mutation p.S110Y 0.48 deleterious_low_confidence(0.04) benign(0.202) TCGA-VS-A9U7-01 X 14883122 14883122 G A FANCB Nonsense_Mutation p.Q171* 0.35 TCGA-VS-A9U7-01 X 14891158 14891158 C T FANCB 5'UTR 0.33 TCGA-VS-A9U7-01 X 149919242 149919242 C A MTMR1 Missense_Mutation p.T528K 0.05 deleterious(0) benign(0.411) TCGA-VS-A9U7-01 X 15339878 15339878 G A PIGA Missense_Mutation p.S402L 0.44 tolerated(0.69) benign(0) TCGA-VS-A9U7-01 X 15403075 15403075 C G PIR 3'UTR 0.43 TCGA-VS-A9U7-01 X 26213294 26213294 A T MAGEB6 3'UTR 0.28 TCGA-VS-A9U7-01 X 3002559 3002559 C G ARSF Missense_Mutation p.L228V 0.53 tolerated(0.12) benign(0.159) TCGA-VS-A9U7-01 X 39923670 39923670 C T BCOR Missense_Mutation p.D1141N 0.20 tolerated(0.06) benign(0.056) TCGA-VS-A9U7-01 X 47583083 47583083 G C CXXC1P1 RNA 0.20 TCGA-VS-A9U7-01 X 48674299 48674299 G A HDAC6 Missense_Mutation p.V445M 0.09 tolerated(0.23) benign(0.013) TCGA-VS-A9U7-01 X 48923074 48923074 G A CCDC120 Missense_Mutation p.E258K 0.34 deleterious(0.02) probably_damaging(0.935) TCGA-VS-A9U7-01 X 48923091 48923091 G A CCDC120 Nonsense_Mutation p.W263* 0.36 TCGA-VS-A9U7-01 X 48926623 48926623 C A CCDC120 3'UTR 0.29 TCGA-VS-A9U7-01 X 57935366 57935366 G A ZXDA Silent p.L497L 0.35 TCGA-VS-A9U7-01 X 70514319 70514319 G A NONO Silent p.G197G 0.12 TCGA-VS-A9U7-01 X 79286341 79286341 C T TBX22 Nonsense_Mutation p.Q432* 0.55 TCGA-VS-A9U7-01 X 80457682 80457682 G A SH3BGRL 5'UTR 0.36 TCGA-VS-A9UA-01 10 102762636 102762636 G A LZTS2 Missense_Mutation p.R114Q 0.32 tolerated(0.41) benign(0.008) TCGA-VS-A9UA-01 10 104242785 104242785 C G ACTR1A Missense_Mutation p.D245H 0.08 deleterious(0) probably_damaging(0.987) TCGA-VS-A9UA-01 10 127806703 127806703 C A ADAM12 Silent p.L172L 0.06 TCGA-VS-A9UA-01 10 1279763 1279763 T C ADARB2 Silent p.R462R 0.42 TCGA-VS-A9UA-01 10 131760456 131760456 G A EBF3 Silent p.L130L 0.46 TCGA-VS-A9UA-01 10 75676277 75676277 C T PLAU Missense_Mutation p.P417L 0.28 tolerated(0.12) possibly_damaging(0.662) TCGA-VS-A9UA-01 10 85991705 85991705 C T LRIT1 Missense_Mutation p.R617K 0.19 tolerated(0.8) benign(0.079) TCGA-VS-A9UA-01 10 96745901 96745901 A C CYP2C9 Missense_Mutation p.K421Q 0.15 deleterious(0) possibly_damaging(0.868) TCGA-VS-A9UA-01 11 113283570 113283570 C T DRD2 Silent p.E282E 0.43 TCGA-VS-A9UA-01 11 115046743 115046743 G A CADM1 3'UTR 0.17 TCGA-VS-A9UA-01 11 117214980 117214980 G C CEP164 Missense_Mutation p.E61Q 0.21 tolerated(0.13) benign(0.157) TCGA-VS-A9UA-01 11 12241843 12241843 C T MICAL2 Silent p.N348N 0.31 TCGA-VS-A9UA-01 11 55594883 55594883 C T OR5L2 Silent p.L63L 0.15 TCGA-VS-A9UA-01 11 55890274 55890274 C T OR8H3 Silent p.L142L 0.35 TCGA-VS-A9UA-01 11 62402461 62402461 G C GANAB Missense_Mutation p.S131C 0.12 tolerated(0.2) benign(0.159) TCGA-VS-A9UA-01 11 64026540 64026540 G A PLCB3 Missense_Mutation p.G450D 0.16 deleterious(0.03) possibly_damaging(0.49) TCGA-VS-A9UA-01 11 64889113 64889113 G C FAU Missense_Mutation p.H27D 0.32 tolerated(0.16) benign(0.006) TCGA-VS-A9UA-01 11 65143584 65143584 G A SLC25A45 3'UTR 0.29 TCGA-VS-A9UA-01 11 770409 770409 C G PDDC1 3'UTR 0.24 TCGA-VS-A9UA-01 11 83173111 83173111 C T DLG2 Missense_Mutation p.E919K 0.40 deleterious(0) probably_damaging(0.975) TCGA-VS-A9UA-01 11 9985359 9985359 G A SBF2 Silent p.I557I 0.14 TCGA-VS-A9UA-01 12 107125937 107125937 G C RFX4 Missense_Mutation p.D470H 0.14 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UA-01 12 10851826 10851826 A T YBX3 3'UTR 0.05 TCGA-VS-A9UA-01 12 113553780 113553780 G A RASAL1 Missense_Mutation p.L270F 0.31 deleterious(0.01) benign(0.238) TCGA-VS-A9UA-01 12 113831800 113831800 C T SDS Silent p.V225V 0.41 TCGA-VS-A9UA-01 12 132262795 132262795 G A SFSWAP Silent p.S776S 0.12 TCGA-VS-A9UA-01 12 26551869 26551869 C T ITPR2 Missense_Mutation p.D2546N 0.18 deleterious(0) possibly_damaging(0.815) TCGA-VS-A9UA-01 12 40714929 40714929 A G LRRK2 Silent p.G1703G 0.09 TCGA-VS-A9UA-01 12 49445359 49445359 C T KMT2D Missense_Mutation p.E703K 0.42 unknown(0) TCGA-VS-A9UA-01 12 51695872 51695872 C G BIN2 Missense_Mutation p.E114Q 0.06 deleterious(0.01) possibly_damaging(0.887) TCGA-VS-A9UA-01 12 55368311 55368311 C A TESPA1 Missense_Mutation p.E12D 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-VS-A9UA-01 12 56213200 56213200 G T ORMDL2 Silent p.L83L 0.26 TCGA-VS-A9UA-01 12 6939120 6939120 G A GPR162 3'Flank 0.18 TCGA-VS-A9UA-01 12 95889827 95889827 G A METAP2 Missense_Mutation p.D274N 0.18 tolerated(0.06) benign(0.146) TCGA-VS-A9UA-01 13 37614549 37614549 C T SUPT20H Nonsense_Mutation p.W187* 0.37 TCGA-VS-A9UA-01 13 41486027 41486027 C G SUGT1P3 RNA 0.42 TCGA-VS-A9UA-01 13 48937001 48937001 C T RB1 Nonsense_Mutation p.Q257* 0.34 TCGA-VS-A9UA-01 13 75876422 75876422 C T TBC1D4 Silent p.L956L 0.15 TCGA-VS-A9UA-01 14 103363706 103363706 C T TRAF3 Nonsense_Mutation p.R310* 0.37 TCGA-VS-A9UA-01 14 21623417 21623417 G A OR5AU1 Silent p.F256F 0.44 TCGA-VS-A9UA-01 14 24650734 24650734 C G IPO4 Missense_Mutation p.Q1010H 0.59 tolerated(0.17) benign(0.005) TCGA-VS-A9UA-01 14 24808688 24808688 C G RIPK3 Missense_Mutation p.D46H 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-VS-A9UA-01 14 33201981 33201981 G C AKAP6 Intron 0.19 TCGA-VS-A9UA-01 14 60574401 60574401 C T PCNXL4 Intron 0.26 TCGA-VS-A9UA-01 14 64936100 64936100 G C AKAP5 Missense_Mutation p.E330Q 0.10 deleterious(0) possibly_damaging(0.894) TCGA-VS-A9UA-01 14 69521546 69521546 C G DCAF5 Missense_Mutation p.Q619H 0.21 tolerated_low_confidence(0.06) benign(0.01) TCGA-VS-A9UA-01 15 25328776 25328776 G A SNORD116-17 RNA 0.13 TCGA-VS-A9UA-01 15 25453259 25453259 G A SNORD115-21 RNA 0.26 TCGA-VS-A9UA-01 15 25490441 25490441 G T SNORD115-40 3'Flank 0.18 TCGA-VS-A9UA-01 15 26874172 26874172 G A GABRB3 Intron 0.38 TCGA-VS-A9UA-01 15 34640393 34640393 C T NUTM1 Silent p.L80L 0.26 TCGA-VS-A9UA-01 15 43690373 43690373 G A TUBGCP4 Missense_Mutation p.E472K 0.21 deleterious(0.01) benign(0.439) TCGA-VS-A9UA-01 15 49052439 49052439 G A CEP152 Missense_Mutation p.H863Y 0.41 tolerated(0.11) benign(0.074) TCGA-VS-A9UA-01 15 50853673 50853673 C G TRPM7 3'UTR 0.31 TCGA-VS-A9UA-01 15 62360015 62360015 G A C2CD4A Nonsense_Mutation p.W68* 0.21 TCGA-VS-A9UA-01 15 64428597 64428597 G A SNX1 Silent p.V478V 0.29 TCGA-VS-A9UA-01 15 77323607 77323607 C T PSTPIP1 Silent p.V243V 0.33 TCGA-VS-A9UA-01 15 89744847 89744847 G T ABHD2 3'UTR 0.24 TCGA-VS-A9UA-01 15 89828330 89828330 C A FANCI Missense_Mutation p.H568N 0.24 tolerated(0.07) benign(0.062) TCGA-VS-A9UA-01 16 2164827 2164827 G A PKD1 Missense_Mutation p.P733S 0.15 benign(0.001) TCGA-VS-A9UA-01 16 25235861 25235861 C G AQP8 Missense_Mutation p.S189C 0.14 tolerated(1) benign(0.004) TCGA-VS-A9UA-01 16 46763037 46763037 C T MYLK3 Silent p.V557V 0.26 TCGA-VS-A9UA-01 16 50353067 50353067 C G BRD7 3'UTR 0.10 TCGA-VS-A9UA-01 16 67234130 67234130 G A ELMO3 Silent p.Q146Q 0.26 TCGA-VS-A9UA-01 16 70928376 70928376 C T HYDIN Missense_Mutation p.R3075H 0.15 probably_damaging(0.923) TCGA-VS-A9UA-01 16 84125427 84125427 G A MBTPS1 Silent p.D291D 0.24 TCGA-VS-A9UA-01 17 17409545 17409545 C T PEMT Missense_Mutation p.E217K 0.23 deleterious(0) probably_damaging(1) TCGA-VS-A9UA-01 17 17697205 17697205 G A RAI1 Missense_Mutation p.G315R 0.39 deleterious(0.01) possibly_damaging(0.653) TCGA-VS-A9UA-01 17 19642911 19642911 G A ALDH3A1 Silent p.I342I 0.37 TCGA-VS-A9UA-01 17 30651543 30651543 G C RHBDL3 3'UTR 0.20 TCGA-VS-A9UA-01 17 31075982 31075982 G A MYO1D Nonsense_Mutation p.R504* 0.30 TCGA-VS-A9UA-01 17 38340889 38340889 C T RAPGEFL1 Silent p.D58D 0.26 TCGA-VS-A9UA-01 17 4849212 4849212 G A PFN1 Missense_Mutation p.R136W 0.21 deleterious(0.01) benign(0.001) TCGA-VS-A9UA-01 17 57768028 57768028 G C CLTC Missense_Mutation p.R1620T 0.10 deleterious(0.04) benign(0.106) TCGA-VS-A9UA-01 17 7139270 7139270 C T PHF23 Missense_Mutation p.E326K 0.18 deleterious(0.03) possibly_damaging(0.905) TCGA-VS-A9UA-01 17 73624418 73624418 C T RECQL5 Silent p.L895L 0.32 TCGA-VS-A9UA-01 17 73813581 73813581 G A UNK Missense_Mutation p.E427K 0.15 tolerated(0.64) benign(0.112) TCGA-VS-A9UA-01 17 74141204 74141204 C G RNF157 3'UTR 0.27 TCGA-VS-A9UA-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.20 deleterious(0) probably_damaging(0.947) TCGA-VS-A9UA-01 17 78298833 78298833 C G RNF213 Missense_Mutation p.Q1010E 0.27 possibly_damaging(0.751) TCGA-VS-A9UA-01 17 80037383 80037383 C G FASN Silent p.L2416L 0.21 TCGA-VS-A9UA-01 17 8349144 8349144 G C NDEL1 Missense_Mutation p.D68H 0.31 tolerated(0.05) possibly_damaging(0.748) TCGA-VS-A9UA-01 18 25531911 25531911 C G CDH2 3'UTR 0.36 TCGA-VS-A9UA-01 18 44559853 44559853 C T TCEB3B Missense_Mutation p.E595K 0.17 tolerated(0.49) benign(0.055) TCGA-VS-A9UA-01 19 10401869 10401869 G A ICAM5 Silent p.E68E 0.29 TCGA-VS-A9UA-01 19 12461855 12461855 C T ZNF442 Missense_Mutation p.D182N 0.28 tolerated(0.09) benign(0.06) TCGA-VS-A9UA-01 19 15224681 15224681 G A SYDE1 Silent p.A705A 0.36 TCGA-VS-A9UA-01 19 1554928 1554928 T A MEX3D 3'UTR 0.08 TCGA-VS-A9UA-01 19 15579561 15579561 A T PGLYRP2 Silent p.T548T 0.26 TCGA-VS-A9UA-01 19 16034633 16034633 G A CYP4F11 Silent p.L303L 0.09 TCGA-VS-A9UA-01 19 23318775 23318775 G C ZNF730 Silent p.L52L 0.15 TCGA-VS-A9UA-01 19 37488609 37488609 G A ZNF568 3'UTR 0.18 TCGA-VS-A9UA-01 19 38376416 38376416 G A WDR87 Missense_Mutation p.S2593F 0.20 unknown(0) TCGA-VS-A9UA-01 19 39669231 39669231 C T PAK4 3'UTR 0.11 TCGA-VS-A9UA-01 19 39998863 39998863 C T DLL3 3'UTR 0.34 TCGA-VS-A9UA-01 19 40537822 40537822 G A ZNF780B 3'UTR 0.12 TCGA-VS-A9UA-01 19 41223418 41223418 G C ITPKC Missense_Mutation p.W126C 0.11 deleterious_low_confidence(0) benign(0) TCGA-VS-A9UA-01 19 44934331 44934331 C T ZNF229 Missense_Mutation p.E209K 0.15 tolerated(1) benign(0.08) TCGA-VS-A9UA-01 19 47980132 47980132 G A KPTN Silent p.S309S 0.17 TCGA-VS-A9UA-01 19 48525470 48525470 C G ELSPBP1 Missense_Mutation p.F186L 0.13 deleterious(0) probably_damaging(0.992) TCGA-VS-A9UA-01 19 48997104 48997104 G A LMTK3 Silent p.V1342V 0.14 TCGA-VS-A9UA-01 19 52090562 52090562 G C ZNF175 Silent p.L326L 0.15 TCGA-VS-A9UA-01 19 52147033 52147033 C G SIGLEC14 Missense_Mutation p.Q337H 0.12 tolerated(0.07) benign(0.119) TCGA-VS-A9UA-01 19 52497279 52497279 T C ZNF615 Silent p.G361G 0.21 TCGA-VS-A9UA-01 19 52588048 52588048 G A ZNF841 Missense_Mutation p.L3F 0.21 tolerated(0.07) benign(0.027) TCGA-VS-A9UA-01 19 53208315 53208315 G A ZNF611 Silent p.L665L 0.17 TCGA-VS-A9UA-01 19 53431680 53431680 C A ZNF321P 3'Flank 0.22 TCGA-VS-A9UA-01 19 54403719 54403719 C G PRKCG Missense_Mutation p.Q474E 0.21 deleterious(0.02) benign(0.103) TCGA-VS-A9UA-01 19 55085340 55085340 G A LILRA2 5'UTR 0.25 TCGA-VS-A9UA-01 19 55106863 55106863 C T LILRA1 Silent p.V219V 0.17 TCGA-VS-A9UA-01 19 55859254 55859254 C T SUV420H2 3'UTR 0.11 TCGA-VS-A9UA-01 19 55880290 55880290 C T IL11 Silent p.L9L 0.19 TCGA-VS-A9UA-01 19 7937249 7937249 G T CTD-3193O13.9 Missense_Mutation p.P294Q 0.32 unknown(0) TCGA-VS-A9UA-01 19 8953558 8953558 G A MBD3L1 Silent p.Q68Q 0.30 TCGA-VS-A9UA-01 19 8976817 8976817 G C MUC16 Missense_Mutation p.I14083M 0.08 probably_damaging(0.999) TCGA-VS-A9UA-01 1 109192873 109192873 G A HENMT1 Missense_Mutation p.S239L 0.21 tolerated(0.78) benign(0.005) TCGA-VS-A9UA-01 1 109363211 109363211 C G AKNAD1 Silent p.V735V 0.09 TCGA-VS-A9UA-01 1 109377579 109377579 C T AKNAD1 Missense_Mutation p.E546K 0.20 tolerated(0.27) benign(0.006) TCGA-VS-A9UA-01 1 114301395 114301395 G A PHTF1 Intron 0.11 TCGA-VS-A9UA-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.19 tolerated(0.06) benign(0.006) TCGA-VS-A9UA-01 1 117576512 117576512 C T CD101 Missense_Mutation p.S952L 0.24 deleterious(0) probably_damaging(0.957) TCGA-VS-A9UA-01 1 146696569 146696569 G A FMO5 Missense_Mutation p.S18F 0.30 deleterious(0) possibly_damaging(0.866) TCGA-VS-A9UA-01 1 149872345 149872345 A G BOLA1 3'Flank 0.33 TCGA-VS-A9UA-01 1 151028167 151028167 C G CDC42SE1 Missense_Mutation p.E14Q 0.11 tolerated(0.39) possibly_damaging(0.481) TCGA-VS-A9UA-01 1 155631044 155631044 C T YY1AP1 Intron 0.15 TCGA-VS-A9UA-01 1 156433610 156433610 C A MEF2D 3'UTR 0.17 TCGA-VS-A9UA-01 1 156434092 156434092 C G MEF2D 3'UTR 0.12 TCGA-VS-A9UA-01 1 157555962 157555962 C A FCRL4 Silent p.V377V 0.28 TCGA-VS-A9UA-01 1 162825027 162825027 C T C1orf110 Missense_Mutation p.R146K 0.20 tolerated(0.22) possibly_damaging(0.87) TCGA-VS-A9UA-01 1 192547396 192547396 G A RGS1 Missense_Mutation p.E109K 0.18 deleterious(0) probably_damaging(0.991) TCGA-VS-A9UA-01 1 197060123 197060123 G A ASPM Missense_Mutation p.H3165Y 0.21 tolerated(1) benign(0.002) TCGA-VS-A9UA-01 1 205767101 205767101 C T SLC41A1 Missense_Mutation p.R308Q 0.15 tolerated(0.25) benign(0.003) TCGA-VS-A9UA-01 1 207217444 207217444 C T YOD1 3'UTR 0.24 TCGA-VS-A9UA-01 1 216166456 216166456 G A USH2A Silent p.D2237D 0.54 TCGA-VS-A9UA-01 1 226420250 226420250 C G LIN9 Missense_Mutation p.Q543H 0.07 deleterious(0.05) benign(0.41) TCGA-VS-A9UA-01 1 237814717 237814717 G A RYR2 Silent p.L2580L 0.18 TCGA-VS-A9UA-01 1 23885653 23885653 G A ID3 Missense_Mutation p.P89S 0.16 tolerated(0.57) benign(0.011) TCGA-VS-A9UA-01 1 247013381 247013381 C T AHCTF1 Missense_Mutation p.R1985K 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-VS-A9UA-01 1 43909369 43909369 G A SZT2 Silent p.L2852L 0.27 TCGA-VS-A9UA-01 1 45267534 45267534 G A PLK3 Missense_Mutation p.E195K 0.16 tolerated(0.48) possibly_damaging(0.507) TCGA-VS-A9UA-01 1 45480018 45480018 G A UROD Intron 0.15 TCGA-VS-A9UA-01 1 6695482 6695482 G T DNAJC11 3'UTR 0.21 TCGA-VS-A9UA-01 1 74663864 74663864 T C LRRIQ3 5'UTR 0.19 TCGA-VS-A9UA-01 1 86362085 86362085 C T COL24A1 Missense_Mutation p.R929K 0.15 deleterious(0.05) possibly_damaging(0.703) TCGA-VS-A9UA-01 1 9416423 9416423 G A SPSB1 Missense_Mutation p.S158N 0.11 tolerated(0.2) benign(0) TCGA-VS-A9UA-01 20 2125314 2125314 C T STK35 3'UTR 0.19 TCGA-VS-A9UA-01 20 44403084 44403084 C G WFDC3 Splice_Site p.X227_splice 0.28 TCGA-VS-A9UA-01 20 61576792 61576792 G C GID8 3'UTR 0.21 TCGA-VS-A9UA-01 20 62374853 62374853 C T SLC2A4RG 3'UTR 0.15 TCGA-VS-A9UA-01 20 62587688 62587688 G A UCKL1 Missense_Mutation p.S13L 0.10 tolerated_low_confidence(0.76) unknown(0) TCGA-VS-A9UA-01 21 30248792 30248792 T A N6AMT1 Missense_Mutation p.K187M 0.10 benign(0.025) TCGA-VS-A9UA-01 21 40567140 40567140 G A BRWD1 Intron 0.16 TCGA-VS-A9UA-01 21 47669506 47669506 G A MCM3AP Intron 0.26 TCGA-VS-A9UA-01 22 17598138 17598138 G A CECR6 3'UTR 0.44 TCGA-VS-A9UA-01 22 31521551 31521551 C G INPP5J Intron 0.16 TCGA-VS-A9UA-01 22 31685650 31685650 C T PIK3IP1 Missense_Mutation p.E115K 0.26 tolerated(0.11) benign(0.219) TCGA-VS-A9UA-01 22 38474242 38474242 G A SLC16A8 3'UTR 0.25 TCGA-VS-A9UA-01 22 38565254 38565254 G C PLA2G6 Silent p.V60V 0.41 TCGA-VS-A9UA-01 22 41513804 41513804 G C EP300 Missense_Mutation p.L236F 0.26 unknown(0) TCGA-VS-A9UA-01 22 44359231 44359231 T C SAMM50 Silent p.V29V 0.11 TCGA-VS-A9UA-01 22 46688814 46688814 C T TTC38 3'UTR 0.15 TCGA-VS-A9UA-01 22 50658870 50658870 G A TUBGCP6 Silent p.L1306L 0.39 TCGA-VS-A9UA-01 2 120221728 120221728 C G SCTR Missense_Mutation p.D203H 0.15 deleterious(0.02) probably_damaging(0.933) TCGA-VS-A9UA-01 2 122135117 122135117 C G CLASP1 Silent p.L1200L 0.12 TCGA-VS-A9UA-01 2 127811488 127811488 G C BIN1 Missense_Mutation p.S411C 0.26 tolerated(0.08) possibly_damaging(0.682) TCGA-VS-A9UA-01 2 133429921 133429921 C G NCKAP5 3'UTR 0.27 TCGA-VS-A9UA-01 2 153575519 153575519 C T ARL6IP6 Silent p.I127I 0.33 TCGA-VS-A9UA-01 2 154801076 154801076 C G GALNT13 Silent p.V22V 0.36 TCGA-VS-A9UA-01 2 160803191 160803191 T G PLA2R1 Intron 0.19 TCGA-VS-A9UA-01 2 169707591 169707591 C G NOSTRIN Intron 0.21 TCGA-VS-A9UA-01 2 172017037 172017037 G A TLK1 5'UTR 0.29 TCGA-VS-A9UA-01 2 191792039 191792039 C G GLS Missense_Mutation p.S419C 0.15 deleterious(0) probably_damaging(0.934) TCGA-VS-A9UA-01 2 202141549 202141549 G A CASP8 Splice_Site p.X280_splice 0.24 TCGA-VS-A9UA-01 2 202141587 202141587 G A CASP8 Missense_Mutation p.R292Q 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-VS-A9UA-01 2 203806596 203806596 G T CARF 5'UTR 0.27 TCGA-VS-A9UA-01 2 204193331 204193331 T C ABI2 Missense_Mutation p.Y32H 0.09 deleterious(0) probably_damaging(0.99) TCGA-VS-A9UA-01 2 219528721 219528721 G A RNF25 Missense_Mutation p.R447W 0.31 deleterious(0) possibly_damaging(0.591) TCGA-VS-A9UA-01 2 26607940 26607940 C G EPT1 Nonsense_Mutation p.S282* 0.25 TCGA-VS-A9UA-01 2 48757091 48757091 G C STON1-GTF2A1L 5'UTR 0.33 TCGA-VS-A9UA-01 2 53943824 53943824 G A ASB3 Nonsense_Mutation p.Q256* 0.26 TCGA-VS-A9UA-01 2 56420303 56420303 G A CCDC85A Missense_Mutation p.G323E 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.894) TCGA-VS-A9UA-01 2 61705975 61705975 G C XPO1 Missense_Mutation p.P1066A 0.20 tolerated(0.41) benign(0.005) TCGA-VS-A9UA-01 2 71625832 71625832 G A ZNF638 Silent p.G810G 0.33 TCGA-VS-A9UA-01 2 74317139 74317139 C T TET3 Missense_Mutation p.R867C 0.32 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UA-01 2 97779421 97779421 G A ANKRD36 5'UTR 0.25 TCGA-VS-A9UA-01 2 98165943 98165943 G C ANKRD36B RNA 0.23 TCGA-VS-A9UA-01 3 108324179 108324179 C T DZIP3 Intron 0.18 TCGA-VS-A9UA-01 3 111658448 111658448 G A PHLDB2 Missense_Mutation p.E753K 0.15 deleterious(0) possibly_damaging(0.721) TCGA-VS-A9UA-01 3 113375998 113375998 G A KIAA2018 Nonsense_Mutation p.Q1511* 0.17 TCGA-VS-A9UA-01 3 126272265 126272265 C G C3orf22 5'UTR 0.21 TCGA-VS-A9UA-01 3 135866348 135866348 G C PPP2R3A 3'UTR 0.11 TCGA-VS-A9UA-01 3 137483868 137483868 G C SOX14 Missense_Mutation p.R81P 0.38 deleterious(0) probably_damaging(1) TCGA-VS-A9UA-01 3 141713884 141713884 C T TFDP2 Missense_Mutation p.E96K 0.18 tolerated(0.17) benign(0.37) TCGA-VS-A9UA-01 3 147105100 147105100 C T ZIC4 3'UTR 0.14 TCGA-VS-A9UA-01 3 173993199 173993199 C G NLGN1 Missense_Mutation p.F247L 0.17 tolerated(0.62) benign(0.047) TCGA-VS-A9UA-01 3 180324303 180324303 G A TTC14 Missense_Mutation p.E362K 0.23 tolerated(0.33) benign(0.212) TCGA-VS-A9UA-01 3 183209722 183209722 G C KLHL6 Missense_Mutation p.S620C 0.11 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-VS-A9UA-01 3 184018111 184018111 G A PSMD2 Missense_Mutation p.R79Q 0.22 deleterious(0.01) possibly_damaging(0.653) TCGA-VS-A9UA-01 3 185960309 185960309 C G DGKG Missense_Mutation p.E604Q 0.07 tolerated(0.21) probably_damaging(0.992) TCGA-VS-A9UA-01 3 196051230 196051230 C A TM4SF19 Missense_Mutation p.D121Y 0.16 deleterious(0.03) benign(0.144) TCGA-VS-A9UA-01 3 197770248 197770248 C T LMLN 3'Flank 0.21 TCGA-VS-A9UA-01 3 3080683 3080683 G A CNTN4 Nonsense_Mutation p.W720* 0.22 TCGA-VS-A9UA-01 3 38812870 38812870 C T SCN10A Missense_Mutation p.E167K 0.27 deleterious(0) probably_damaging(1) TCGA-VS-A9UA-01 3 46758961 46758961 G C PRSS50 Missense_Mutation p.F91L 0.41 tolerated(0.66) benign(0) TCGA-VS-A9UA-01 3 51979871 51979871 G A PARP3 Silent p.V345V 0.65 TCGA-VS-A9UA-01 3 63429091 63429091 G C SYNPR Intron 0.05 TCGA-VS-A9UA-01 4 140432036 140432036 C G SETD7 3'UTR 0.19 TCGA-VS-A9UA-01 4 153247311 153247311 C G FBXW7 Missense_Mutation p.L497F 0.31 deleterious(0.05) possibly_damaging(0.798) TCGA-VS-A9UA-01 4 153247366 153247366 C G FBXW7 Missense_Mutation p.R479P 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A9UA-01 4 170988537 170988537 G C AADAT Silent p.L301L 0.27 TCGA-VS-A9UA-01 4 46390779 46390779 C G GABRA2 Intron 0.26 TCGA-VS-A9UA-01 4 46967138 46967138 G A GABRA4 Missense_Mutation p.A328V 0.25 deleterious(0.01) probably_damaging(1) TCGA-VS-A9UA-01 4 47465677 47465677 G A COMMD8 5'UTR 0.17 TCGA-VS-A9UA-01 4 48517050 48517059 CAGTCCGGAG A FRYL In_Frame_Del p.G2643_S2645del 0.29 TCGA-VS-A9UA-01 4 56883907 56883907 G C CEP135 Missense_Mutation p.E966Q 0.24 deleterious(0) possibly_damaging(0.841) TCGA-VS-A9UA-01 4 57204884 57204884 A C AASDH Missense_Mutation p.F994C 0.30 tolerated(0.54) possibly_damaging(0.551) TCGA-VS-A9UA-01 4 68380212 68380212 G A CENPC Nonsense_Mutation p.Q342* 0.29 TCGA-VS-A9UA-01 4 73957011 73957011 G T ANKRD17 Missense_Mutation p.P2112T 0.37 benign(0.001) TCGA-VS-A9UA-01 5 1035568 1035568 G C NKD2 Missense_Mutation p.R213S 0.14 deleterious(0) benign(0.228) TCGA-VS-A9UA-01 5 131290030 131290030 G C ACSL6 Nonsense_Mutation p.S689* 0.25 TCGA-VS-A9UA-01 5 132232681 132232681 C G AFF4 Missense_Mutation p.Q547H 0.17 tolerated(0.16) probably_damaging(0.997) TCGA-VS-A9UA-01 5 140515570 140515570 G A PCDHB5 Missense_Mutation p.R185H 0.25 tolerated_low_confidence(0.27) benign(0.005) TCGA-VS-A9UA-01 5 145522432 145522432 C T LARS Intron 0.12 TCGA-VS-A9UA-01 5 1466885 1466885 C T LPCAT1 Missense_Mutation p.E467K 0.10 tolerated(0.39) benign(0.098) TCGA-VS-A9UA-01 5 150946004 150946004 G A FAT2 Missense_Mutation p.S830L 0.27 possibly_damaging(0.608) TCGA-VS-A9UA-01 5 176637074 176637074 C T NSD1 Silent p.L558L 0.37 TCGA-VS-A9UA-01 5 38941529 38941529 C T RICTOR 3'UTR 0.19 TCGA-VS-A9UA-01 5 65892791 65892791 C T MAST4 Missense_Mutation p.A103V 0.41 benign(0.103) TCGA-VS-A9UA-01 5 66460223 66460223 G A MAST4 Missense_Mutation p.R1739Q 0.16 possibly_damaging(0.796) TCGA-VS-A9UA-01 5 68665492 68665492 C G TAF9 5'UTR 0.15 TCGA-VS-A9UA-01 5 82937314 82937314 T G HAPLN1 3'UTR 0.34 TCGA-VS-A9UA-01 6 123673709 123673709 C T TRDN Silent p.E448E 0.11 TCGA-VS-A9UA-01 6 147684587 147684587 G A STXBP5 Missense_Mutation p.D888N 0.13 tolerated(0.09) benign(0.062) TCGA-VS-A9UA-01 6 150715307 150715307 C T IYD Silent p.F201F 0.28 TCGA-VS-A9UA-01 6 151671894 151671894 G C AKAP12 Missense_Mutation p.E790Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UA-01 6 152469369 152469369 G C SYNE1 Missense_Mutation p.Q8263E 0.18 benign(0.232) TCGA-VS-A9UA-01 6 154360492 154360492 G A OPRM1 Intron 0.21 TCGA-VS-A9UA-01 6 154440054 154440054 G T OPRM1 3'Flank 0.20 TCGA-VS-A9UA-01 6 27783161 27783161 G A HIST1H2BM Missense_Mutation p.E114K 0.28 tolerated_low_confidence(0.07) benign(0.078) TCGA-VS-A9UA-01 6 28966528 28966528 A G ZNF311 Missense_Mutation p.L133P 0.37 tolerated(0.3) probably_damaging(0.998) TCGA-VS-A9UA-01 6 31795624 31795624 T C HSPA1B 5'UTR 0.19 TCGA-VS-A9UA-01 6 31795627 31795627 T C HSPA1B 5'UTR 0.15 TCGA-VS-A9UA-01 6 33405909 33405909 G C SYNGAP1 Missense_Mutation p.M409I 0.14 tolerated(0.68) possibly_damaging(0.854) TCGA-VS-A9UA-01 6 33641414 33641414 C T ITPR3 Missense_Mutation p.S992F 0.16 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UA-01 6 34843749 34843749 C T UHRF1BP1 3'UTR 0.41 TCGA-VS-A9UA-01 6 43222809 43222809 G A TTBK1 Missense_Mutation p.R200Q 0.40 possibly_damaging(0.692) TCGA-VS-A9UA-01 6 7576615 7576615 C T DSP Missense_Mutation p.R907C 0.32 probably_damaging(0.989) TCGA-VS-A9UA-01 6 89321729 89321729 G A RNGTT 3'UTR 0.42 TCGA-VS-A9UA-01 6 90463933 90463933 G A MDN1 Missense_Mutation p.R945W 0.22 probably_damaging(1) TCGA-VS-A9UA-01 7 100681467 100681467 C A MUC17 Missense_Mutation p.A2257D 0.18 unknown(0) TCGA-VS-A9UA-01 7 117868000 117868000 C A ANKRD7 Intron 0.21 TCGA-VS-A9UA-01 7 134618493 134618493 G A CALD1 Missense_Mutation p.A325T 0.27 tolerated_low_confidence(0.34) unknown(0) TCGA-VS-A9UA-01 7 142180549 142180549 G C TRBV6-5 Missense_Mutation p.Q104E 0.05 deleterious(0.04) possibly_damaging(0.73) TCGA-VS-A9UA-01 7 142919594 142919594 G A TAS2R40 Silent p.L141L 0.22 TCGA-VS-A9UA-01 7 16348154 16348154 G C ISPD Silent p.L261L 0.06 TCGA-VS-A9UA-01 7 42012068 42012068 G A GLI3 Silent p.G657G 0.10 TCGA-VS-A9UA-01 7 55214402 55214402 G C EGFR Missense_Mutation p.M176I 0.13 tolerated(0.36) benign(0.001) TCGA-VS-A9UA-01 7 64292013 64292013 G C ZNF138 Missense_Mutation p.L105F 0.27 tolerated(0.1) benign(0.295) TCGA-VS-A9UA-01 7 86416011 86416011 C T GRM3 Silent p.D301D 0.17 TCGA-VS-A9UA-01 7 97369194 97369194 G A TAC1 Missense_Mutation p.E118K 0.34 deleterious(0.03) possibly_damaging(0.482) TCGA-VS-A9UA-01 8 104340511 104340511 C T FZD6 Nonsense_Mutation p.R470* 0.27 TCGA-VS-A9UA-01 8 17500299 17500299 G C PDGFRL Missense_Mutation p.E373Q 0.50 tolerated(0.18) benign(0.059) TCGA-VS-A9UA-01 8 20030592 20030592 G A SLC18A1 Nonsense_Mutation p.R227* 0.39 TCGA-VS-A9UA-01 8 22874981 22874981 G C RHOBTB2 Nonstop_Mutation p.*750Sext*7 0.61 TCGA-VS-A9UA-01 8 37593386 37593386 G A RP11-863K10.7 3'UTR 0.24 TCGA-VS-A9UA-01 8 56986314 56986314 C G RPS20 Missense_Mutation p.L39F 0.28 deleterious(0.02) possibly_damaging(0.612) TCGA-VS-A9UA-01 8 57876591 57876591 C A IMPAD1 Missense_Mutation p.D281Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-VS-A9UA-01 8 65494915 65494915 G A BHLHE22 3'UTR 0.28 TCGA-VS-A9UA-01 8 74706272 74706272 G A UBE2W 3'UTR 0.15 TCGA-VS-A9UA-01 8 95942312 95942312 G A TP53INP1 3'UTR 0.05 TCGA-VS-A9UA-01 9 103261057 103261057 G A TMEFF1 Silent p.V69V 0.21 TCGA-VS-A9UA-01 9 104332739 104332739 T C GRIN3A 3'UTR 0.18 TCGA-VS-A9UA-01 9 113637069 113637069 C A LPAR1 3'UTR 0.41 TCGA-VS-A9UA-01 9 127176204 127176204 G A PSMB7 Silent p.F79F 0.18 TCGA-VS-A9UA-01 9 138710460 138710460 C T CAMSAP1 Missense_Mutation p.R1321H 0.32 deleterious(0) probably_damaging(0.961) TCGA-VS-A9UA-01 9 32632769 32632769 C G TAF1L Missense_Mutation p.D937H 0.18 deleterious(0) possibly_damaging(0.838) TCGA-VS-A9UA-01 9 35958029 35958029 C G OR2S2 Missense_Mutation p.E23Q 0.17 deleterious(0.04) benign(0.028) TCGA-VS-A9UA-01 9 5081844 5081844 C T JAK2 Silent p.L852L 0.36 TCGA-VS-A9UA-01 9 5081853 5081853 C T JAK2 Missense_Mutation p.L855F 0.36 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UA-01 9 5304522 5304522 G C RLN2 Missense_Mutation p.S20C 0.33 tolerated(0.09) benign(0.439) TCGA-VS-A9UA-01 9 77684005 77684005 G A NMRK1 Nonsense_Mutation p.Q135* 0.11 TCGA-VS-A9UA-01 9 84198663 84198663 C G TLE1 3'UTR 0.20 TCGA-VS-A9UA-01 X 106040149 106040149 G C RNF128 3'UTR 0.18 TCGA-VS-A9UA-01 X 107977375 107977375 G C IRS4 Missense_Mutation p.R734G 0.18 deleterious(0.01) unknown(0) TCGA-VS-A9UA-01 X 110544817 110544817 G A DCX 3'UTR 0.24 TCGA-VS-A9UA-01 X 110973656 110973656 G A ALG13 Splice_Site p.X801_splice 0.22 TCGA-VS-A9UA-01 X 111195312 111195312 C G TRPC5 Missense_Mutation p.E113Q 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-VS-A9UA-01 X 151870118 151870118 G C MAGEA6 Missense_Mutation p.E270Q 0.04 deleterious(0) probably_damaging(0.994) TCGA-VS-A9UA-01 X 151900808 151900808 C G MAGEA12 5'UTR 0.32 TCGA-VS-A9UA-01 X 31137515 31137515 A G DMD 3'UTR 0.21 TCGA-VS-A9UA-01 X 32591884 32591884 C T DMD Nonsense_Mutation p.W561* 0.37 TCGA-VS-A9UA-01 X 36156156 36156156 C T CHDC2 Missense_Mutation p.A376V 0.38 deleterious(0.02) probably_damaging(0.974) TCGA-VS-A9UA-01 X 44386571 44386571 C G FUNDC1 Missense_Mutation p.R101T 0.14 deleterious(0) possibly_damaging(0.902) TCGA-VS-A9UA-01 X 48341391 48341391 G A FTSJ1 Missense_Mutation p.M325I 0.31 tolerated_low_confidence(0.89) benign(0.001) TCGA-VS-A9UA-01 X 50136216 50136216 C T DGKK RNA 0.22 TCGA-VS-A9UA-01 X 86919816 86919816 C T KLHL4 Nonsense_Mutation p.R660* 0.28 TCGA-VS-A9UA-01 X 91877920 91877920 G A PCDH11X 3'UTR 0.27 TCGA-VS-A9UB-01 10 112839837 112839837 C T ADRA2A 3'UTR 0.32 TCGA-VS-A9UB-01 10 114911561 114911561 A G TCF7L2 Missense_Mutation p.Y360C 0.29 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UB-01 10 119301980 119301980 T A EMX2 5'UTR 0.29 TCGA-VS-A9UB-01 10 126691954 126691954 T A CTBP2 Missense_Mutation p.T596S 0.18 deleterious(0.03) possibly_damaging(0.501) TCGA-VS-A9UB-01 10 27035265 27035265 G A PDSS1 Missense_Mutation p.D371N 0.17 tolerated(0.19) possibly_damaging(0.654) TCGA-VS-A9UB-01 10 33468898 33468898 T C NRP1 3'UTR 0.25 TCGA-VS-A9UB-01 10 43016243 43016243 T G ZNF37BP RNA 0.22 TCGA-VS-A9UB-01 10 72183579 72183579 T G EIF4EBP2 3'UTR 0.29 TCGA-VS-A9UB-01 10 87361937 87361937 C T GRID1 3'UTR 0.09 TCGA-VS-A9UB-01 11 104774139 104774139 T A CASP12 5'Flank 0.41 TCGA-VS-A9UB-01 11 125513714 125513714 G A CHEK1 Missense_Mutation p.G281D 0.69 tolerated(0.18) benign(0.001) TCGA-VS-A9UB-01 11 17655409 17655409 G C OTOG Missense_Mutation p.E2431Q 0.24 benign(0.043) TCGA-VS-A9UB-01 11 62462100 62462100 G A BSCL2 Silent p.F190F 0.31 TCGA-VS-A9UB-01 11 68029105 68029105 C T C11orf24 3'UTR 0.28 TCGA-VS-A9UB-01 11 68315632 68315632 C G PPP6R3 Missense_Mutation p.T171R 0.26 deleterious(0) benign(0.232) TCGA-VS-A9UB-01 11 77885165 77885165 C T KCTD21 Missense_Mutation p.A146T 0.09 deleterious(0.03) benign(0.271) TCGA-VS-A9UB-01 12 104152914 104152914 T A STAB2 Missense_Mutation p.L2371M 0.22 deleterious(0) probably_damaging(0.978) TCGA-VS-A9UB-01 12 124082585 124082585 G T TMED2 3'UTR 0.22 TCGA-VS-A9UB-01 12 132683746 132683746 G A GALNT9 Silent p.L124L 0.52 TCGA-VS-A9UB-01 12 22001093 22001093 C T ABCC9 Missense_Mutation p.E953K 0.44 tolerated(0.12) benign(0.126) TCGA-VS-A9UB-01 12 43817416 43817416 A G ADAMTS20 Intron 0.44 TCGA-VS-A9UB-01 12 49359922 49359922 A T WNT10B Missense_Mutation p.C376S 0.43 deleterious(0) probably_damaging(0.991) TCGA-VS-A9UB-01 12 49359923 49359923 C A WNT10B Silent p.L375L 0.44 TCGA-VS-A9UB-01 12 49690681 49690681 G A PRPH Missense_Mutation p.D238N 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-VS-A9UB-01 12 51584292 51584292 C T POU6F1 Missense_Mutation p.R215Q 0.60 deleterious(0.03) benign(0.292) TCGA-VS-A9UB-01 13 111147803 111147803 A T COL4A2 Missense_Mutation p.Q1250L 0.33 benign(0.069) TCGA-VS-A9UB-01 13 27259869 27259869 A T WASF3 Nonsense_Mutation p.K466* 0.27 TCGA-VS-A9UB-01 13 47011573 47011573 G A PPP1R2P4 RNA 0.29 TCGA-VS-A9UB-01 13 51825643 51825643 T C FAM124A Missense_Mutation p.V83A 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-VS-A9UB-01 13 58302266 58302266 C T PCDH17 3'UTR 0.31 TCGA-VS-A9UB-01 14 21992982 21992982 G A SALL2 Nonsense_Mutation p.R294* 0.38 TCGA-VS-A9UB-01 14 24786897 24786897 G A LTB4R 3'UTR 0.24 TCGA-VS-A9UB-01 14 35560362 35560362 G A PPP2R3C Missense_Mutation p.P343S 0.56 deleterious(0.04) possibly_damaging(0.84) TCGA-VS-A9UB-01 14 71479803 71479803 C T PCNX Silent p.Y960Y 0.36 TCGA-VS-A9UB-01 14 77950876 77950876 C A ISM2 Missense_Mutation p.R139S 0.37 tolerated(0.38) unknown(0) TCGA-VS-A9UB-01 15 30058686 30058686 T C TJP1 Silent p.V124V 0.12 TCGA-VS-A9UB-01 15 35082450 35082450 T C ACTC1 3'UTR 0.16 TCGA-VS-A9UB-01 15 42983161 42983161 C G STARD9 Missense_Mutation p.Q3129E 0.23 possibly_damaging(0.744) TCGA-VS-A9UB-01 15 43038276 43038276 G T TTBK2 Missense_Mutation p.P1151H 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VS-A9UB-01 15 48779328 48779328 T C FBN1 Missense_Mutation p.Y1178C 0.18 probably_damaging(0.982) TCGA-VS-A9UB-01 15 51747352 51747352 T C DMXL2 Missense_Mutation p.Y2846C 0.27 deleterious(0) probably_damaging(1) TCGA-VS-A9UB-01 15 67768047 67768047 G C IQCH Missense_Mutation p.S897T 0.14 tolerated(0.2) benign(0.015) TCGA-VS-A9UB-01 15 83357958 83357958 T A AP3B2 Silent p.S72S 0.33 TCGA-VS-A9UB-01 16 2607892 2607892 G A PDPK1 Silent p.P71P 0.11 TCGA-VS-A9UB-01 16 29819991 29819991 C G MAZ Missense_Mutation p.S403W 0.47 deleterious(0) possibly_damaging(0.581) TCGA-VS-A9UB-01 16 30976044 30976044 C T SETD1A Silent p.I327I 0.29 TCGA-VS-A9UB-01 16 3788560 3788560 C T CREBBP Missense_Mutation p.G1465E 0.53 unknown(0) TCGA-VS-A9UB-01 16 55515659 55515659 G A MMP2 Intron 0.32 TCGA-VS-A9UB-01 16 630915 630915 A T PIGQ Missense_Mutation p.N492Y 0.18 deleterious(0.01) probably_damaging(0.926) TCGA-VS-A9UB-01 16 85100830 85100830 G A KIAA0513 Silent p.A51A 0.23 TCGA-VS-A9UB-01 16 90015976 90015976 C T DEF8 Missense_Mutation p.L35F 0.26 deleterious_low_confidence(0.05) benign(0.014) TCGA-VS-A9UB-01 17 10433208 10433208 C T MYH2 Missense_Mutation p.D961N 0.38 deleterious(0) possibly_damaging(0.786) TCGA-VS-A9UB-01 17 12859252 12859252 T C ARHGAP44 Missense_Mutation p.M402T 0.26 deleterious(0) benign(0.027) TCGA-VS-A9UB-01 17 17720701 17720701 G A SREBF1 Missense_Mutation p.T522M 0.26 tolerated(0.06) benign(0.092) TCGA-VS-A9UB-01 17 27778626 27778626 C G TAOK1 Missense_Mutation p.F20L 0.27 tolerated(0.6) benign(0.019) TCGA-VS-A9UB-01 17 33457640 33457640 T A NLE1 3'Flank 0.33 TCGA-VS-A9UB-01 17 38133327 38133327 T C GSDMA 3'UTR 0.40 TCGA-VS-A9UB-01 17 39079129 39079130 TC - KRT23 3'UTR 0.24 TCGA-VS-A9UB-01 17 40465896 40465896 G A STAT3 3'UTR 0.52 TCGA-VS-A9UB-01 17 4638401 4638401 G A CXCL16 Missense_Mutation p.P254L 0.22 tolerated(0.18) benign(0.007) TCGA-VS-A9UB-01 17 48542709 48542709 G A CHAD Missense_Mutation p.R344C 0.24 deleterious(0.01) possibly_damaging(0.676) TCGA-VS-A9UB-01 17 60447602 60447602 C G EFCAB3 5'UTR 0.51 TCGA-VS-A9UB-01 17 66538858 66538858 T C FAM20A Missense_Mutation p.Q302R 0.42 tolerated(0.86) benign(0.084) TCGA-VS-A9UB-01 17 73945808 73945808 C T ACOX1 Missense_Mutation p.R490H 0.08 deleterious(0) probably_damaging(1) TCGA-VS-A9UB-01 18 44260295 44260295 A C ST8SIA5 Missense_Mutation p.Y281D 0.28 probably_damaging(0.999) TCGA-VS-A9UB-01 18 46446270 46446270 G C SMAD7 3'UTR 0.33 TCGA-VS-A9UB-01 18 5397267 5397267 G A EPB41L3 Silent p.S877S 0.37 TCGA-VS-A9UB-01 19 12799939 12799939 G A FBXW9 3'UTR 0.30 TCGA-VS-A9UB-01 19 13208519 13208522 CCCT - NFIX 3'Flank 0.09 TCGA-VS-A9UB-01 19 16145823 16145823 G A LINC00905 Splice_Site 0.27 TCGA-VS-A9UB-01 19 19216437 19216437 C T SLC25A42 Missense_Mutation p.S94L 0.21 deleterious(0) probably_damaging(0.975) TCGA-VS-A9UB-01 19 19932507 19932507 G A ZNF506 5'UTR 0.30 TCGA-VS-A9UB-01 19 22157512 22157512 A G ZNF208 Silent p.H108H 0.20 TCGA-VS-A9UB-01 19 49216667 49216667 G T MAMSTR Missense_Mutation p.P369T 0.33 deleterious(0.02) unknown(0) TCGA-VS-A9UB-01 19 50983961 50983961 G A EMC10 Missense_Mutation p.V176M 0.30 tolerated(0.1) probably_damaging(0.949) TCGA-VS-A9UB-01 19 52716048 52716048 A G PPP2R1A Missense_Mutation p.I205V 0.08 tolerated(0.12) benign(0.006) TCGA-VS-A9UB-01 19 53057337 53057337 A G ZNF808 Missense_Mutation p.T390A 0.28 deleterious(0.05) possibly_damaging(0.523) TCGA-VS-A9UB-01 19 56249490 56249490 A G NLRP9 Missense_Mutation p.L84P 0.28 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UB-01 19 58117100 58117100 C T ZNF530 Silent p.S69S 0.35 TCGA-VS-A9UB-01 1 11269444 11269444 C G MTOR Silent p.G1242G 0.25 TCGA-VS-A9UB-01 1 1288472 1288472 G A MXRA8 3'UTR 0.42 TCGA-VS-A9UB-01 1 151679659 151679659 G T CELF3 Missense_Mutation p.P295H 0.17 tolerated(0.54) benign(0.002) TCGA-VS-A9UB-01 1 153587819 153587819 C G S100A14 Missense_Mutation p.E23D 0.33 tolerated(0.12) benign(0.271) TCGA-VS-A9UB-01 1 15441203 15441203 C T KAZN 3'UTR 0.18 TCGA-VS-A9UB-01 1 155837753 155837753 C T SYT11 Intron 0.29 TCGA-VS-A9UB-01 1 162368720 162368720 G A SH2D1B Missense_Mutation p.T119I 0.59 tolerated(0.36) benign(0.001) TCGA-VS-A9UB-01 1 169702064 169702064 G T SELE Missense_Mutation p.A38D 0.19 tolerated(0.57) benign(0.012) TCGA-VS-A9UB-01 1 204985917 204985917 G A NFASC 3'UTR 0.31 TCGA-VS-A9UB-01 1 205312636 205312636 C G KLHDC8A Missense_Mutation p.V33L 0.33 tolerated(1) benign(0.005) TCGA-VS-A9UB-01 1 205627999 205627999 C T SLC45A3 3'UTR 0.36 TCGA-VS-A9UB-01 1 236914918 236914918 T C ACTN2 Missense_Mutation p.V602A 0.33 deleterious(0.02) benign(0.28) TCGA-VS-A9UB-01 1 26161952 26161952 A T AUNIP Missense_Mutation p.H202Q 0.26 tolerated(0.1) possibly_damaging(0.767) TCGA-VS-A9UB-01 1 35251038 35251038 G T GJB3 Silent p.G225G 0.25 TCGA-VS-A9UB-01 1 36214078 36214078 G T CLSPN Missense_Mutation p.F800L 0.21 tolerated(0.77) benign(0.001) TCGA-VS-A9UB-01 1 7723457 7723457 C T CAMTA1 Missense_Mutation p.R284C 0.20 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UB-01 1 93724311 93724311 C T CCDC18 Missense_Mutation p.H1238Y 0.37 deleterious(0.01) possibly_damaging(0.601) TCGA-VS-A9UB-01 20 24988553 24988553 T A ACSS1 Missense_Mutation p.R639W 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A9UB-01 20 5565537 5565537 G A GPCPD1 Intron 0.25 TCGA-VS-A9UB-01 20 5566867 5566867 G C GPCPD1 Missense_Mutation p.L94V 0.36 tolerated(0.22) benign(0.378) TCGA-VS-A9UB-01 20 5988037 5988037 G A CRLS1 Intron 0.27 TCGA-VS-A9UB-01 20 61711369 61711369 A G RP11-305P22.9 RNA 0.26 TCGA-VS-A9UB-01 20 62737660 62737660 C T NPBWR2 Silent p.T175T 0.26 TCGA-VS-A9UB-01 21 34635420 34635420 T G IFNAR2 Missense_Mutation p.L388W 0.26 deleterious(0.04) probably_damaging(0.92) TCGA-VS-A9UB-01 21 45825797 45825797 G A TRPM2 Silent p.P889P 0.42 TCGA-VS-A9UB-01 22 39445561 39445561 G T APOBEC3F Missense_Mutation p.W233L 0.59 tolerated(0.26) benign(0.01) TCGA-VS-A9UB-01 2 109605662 109605662 C G EDAR 5'UTR 0.17 TCGA-VS-A9UB-01 2 113074064 113074064 A G ZC3H6 Silent p.K255K 0.17 TCGA-VS-A9UB-01 2 135696621 135696621 T C CCNT2 Missense_Mutation p.L140P 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A9UB-01 2 136542295 136542296 - A UBXN4 3'UTR 0.17 TCGA-VS-A9UB-01 2 186659918 186659918 T A FSIP2 Missense_Mutation p.S2774R 0.08 possibly_damaging(0.795) TCGA-VS-A9UB-01 2 202136253 202136254 AG - CASP8 Frame_Shift_Del p.Q166Hfs*14 0.44 TCGA-VS-A9UB-01 2 204067418 204067418 A G NBEAL1 Missense_Mutation p.T2445A 0.53 deleterious(0.01) probably_damaging(0.997) TCGA-VS-A9UB-01 2 26690264 26690264 T A OTOF Missense_Mutation p.E1399V 0.40 deleterious(0.04) benign(0.15) TCGA-VS-A9UB-01 2 3481561 3481561 G A TRAPPC12 Missense_Mutation p.M624I 0.19 tolerated(0.17) benign(0.345) TCGA-VS-A9UB-01 2 44019878 44019878 A T DYNC2LI1 Intron 0.41 TCGA-VS-A9UB-01 2 71753474 71753474 A T DYSF Missense_Mutation p.Q425L 0.20 deleterious(0.04) possibly_damaging(0.835) TCGA-VS-A9UB-01 2 77745252 77745253 - T LRRTM4 Intron 0.16 TCGA-VS-A9UB-01 2 86327115 86327115 T A POLR1A Silent p.T86T 0.31 TCGA-VS-A9UB-01 2 86371399 86371399 G C IMMT Missense_Mutation p.P757A 0.30 tolerated_low_confidence(0.37) benign(0.081) TCGA-VS-A9UB-01 2 88748264 88748264 G A FOXI3 RNA 0.38 TCGA-VS-A9UB-01 2 97866082 97866082 A - ANKRD36 Frame_Shift_Del p.K924Nfs*17 0.18 TCGA-VS-A9UB-01 3 102136957 102136957 A G ZPLD1 5'UTR 0.16 TCGA-VS-A9UB-01 3 107491858 107491858 C T BBX Silent p.C430C 0.17 TCGA-VS-A9UB-01 3 109046811 109046811 A C DPPA4 3'UTR 0.20 TCGA-VS-A9UB-01 3 126062650 126062650 C T KLF15 Missense_Mutation p.A391T 0.16 deleterious(0.01) benign(0.368) TCGA-VS-A9UB-01 3 158289029 158289029 G A MLF1 5'Flank 0.29 TCGA-VS-A9UB-01 3 167322117 167322117 A G WDR49 Silent p.F25F 0.14 TCGA-VS-A9UB-01 3 184971717 184971717 G T EHHADH Intron 0.27 TCGA-VS-A9UB-01 3 26751442 26751442 C T LRRC3B Silent p.L93L 0.47 TCGA-VS-A9UB-01 3 33538552 33538552 T A CLASP2 3'UTR 0.51 TCGA-VS-A9UB-01 3 46399373 46399373 C T CCR2 Silent p.L119L 0.26 TCGA-VS-A9UB-01 3 57445384 57445384 G A DNAH12 Missense_Mutation p.R933C 0.19 deleterious(0) benign(0.146) TCGA-VS-A9UB-01 4 164272642 164272642 T A NPY5R Missense_Mutation p.V406E 0.54 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UB-01 4 187527363 187527363 G C FAT1 Nonsense_Mutation p.S3404* 0.66 TCGA-VS-A9UB-01 5 156723711 156723711 G C CYFIP2 Missense_Mutation p.E80Q 0.13 tolerated(0.08) benign(0.082) TCGA-VS-A9UB-01 5 159399075 159399075 G A ADRA1B Missense_Mutation p.R380H 0.55 tolerated(0.07) benign(0.001) TCGA-VS-A9UB-01 5 41038876 41038876 T A MROH2B Missense_Mutation p.I726L 0.16 tolerated(1) benign(0.001) TCGA-VS-A9UB-01 5 41057445 41057445 C G MROH2B Silent p.L258L 0.52 TCGA-VS-A9UB-01 5 41310973 41310973 A G PLCXD3 3'UTR 0.26 TCGA-VS-A9UB-01 5 80383104 80383104 C T RASGRF2 Intron 0.36 TCGA-VS-A9UB-01 6 18427882 18427882 T A RNF144B Missense_Mutation p.V79E 0.24 tolerated(0.44) benign(0.017) TCGA-VS-A9UB-01 6 29910404 29910404 G C HLA-A Splice_Site p.X25_splice 0.25 TCGA-VS-A9UB-01 6 33237597 33237597 C T VPS52 Splice_Site p.X77_splice 0.18 TCGA-VS-A9UB-01 6 35213846 35213846 T A SCUBE3 Missense_Mutation p.F909I 0.32 deleterious(0) probably_damaging(1) TCGA-VS-A9UB-01 6 79787815 79787815 G T PHIP 5'UTR 0.33 TCGA-VS-A9UB-01 7 103141301 103141301 C A RELN Missense_Mutation p.G2853V 0.26 deleterious(0) possibly_damaging(0.809) TCGA-VS-A9UB-01 7 103292218 103292218 A T RELN Silent p.S594S 0.26 TCGA-VS-A9UB-01 7 12375779 12375779 G A VWDE Missense_Mutation p.R1548W 0.14 deleterious(0.03) possibly_damaging(0.462) TCGA-VS-A9UB-01 7 141896607 141896607 C T RP11-1220K2.2 Silent p.I1541I 0.20 TCGA-VS-A9UB-01 7 89912362 89912362 A T C7orf63 Missense_Mutation p.Q510L 0.23 tolerated(0.08) benign(0.304) TCGA-VS-A9UB-01 8 11667296 11667296 A G FDFT1 Silent p.Q106Q 0.46 TCGA-VS-A9UB-01 8 123964786 123964786 A G ZHX2 Missense_Mutation p.T346A 0.20 tolerated(0.13) benign(0.395) TCGA-VS-A9UB-01 8 13357084 13357084 A G DLC1 Missense_Mutation p.I166T 0.58 tolerated_low_confidence(0.69) benign(0) TCGA-VS-A9UB-01 8 75157039 75157039 C T JPH1 Missense_Mutation p.G544R 0.22 tolerated(0.11) probably_damaging(0.92) TCGA-VS-A9UB-01 8 98737801 98737801 G C MTDH 3'UTR 0.24 TCGA-VS-A9UB-01 9 102730826 102730826 T A STX17 Silent p.A260A 0.21 TCGA-VS-A9UB-01 9 124080948 124080948 G A GSN Silent p.S378S 0.68 TCGA-VS-A9UB-01 9 128729486 128729486 C T PBX3 3'Flank 0.17 TCGA-VS-A9UB-01 9 130871472 130871472 C T SLC25A25 3'UTR 0.16 TCGA-VS-A9UB-01 9 135493753 135493753 G A DDX31 Missense_Mutation p.H702Y 0.54 tolerated(0.84) probably_damaging(0.968) TCGA-VS-A9UB-01 9 139409112 139409112 G T NOTCH1 Missense_Mutation p.P686H 0.17 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UB-01 9 37740551 37740551 G A FRMPD1 Missense_Mutation p.E676K 0.12 tolerated(0.3) benign(0.003) TCGA-VS-A9UB-01 9 37866113 37866113 C T DCAF10 3'Flank 0.24 TCGA-VS-A9UB-01 9 92006199 92006199 G A SEMA4D Missense_Mutation p.R252W 0.36 deleterious(0) probably_damaging(1) TCGA-VS-A9UB-01 X 100601424 100601424 C T TIMM8A 3'UTR 0.20 TCGA-VS-A9UB-01 X 108718438 108718438 C A GUCY2F Missense_Mutation p.R243L 0.29 deleterious(0.03) benign(0.005) TCGA-VS-A9UB-01 X 149638444 149638444 T A MAMLD1 Missense_Mutation p.L175Q 0.21 deleterious(0) probably_damaging(1) TCGA-VS-A9UB-01 X 152226663 152226663 T A PNMA3 Nonsense_Mutation p.C417* 0.14 TCGA-VS-A9UB-01 X 66766587 66766587 A T AR Silent p.G533G 0.04 TCGA-VS-A9UB-01 X 68381871 68381871 G T PJA1 Missense_Mutation p.P404H 0.32 deleterious(0.01) benign(0.049) TCGA-VS-A9UB-01 X 69258872 69258872 A C EDA 3'UTR 0.27 TCGA-VS-A9UB-01 X 69844734 69844734 A G TEX11 Missense_Mutation p.L565S 0.23 deleterious(0.03) probably_damaging(0.989) TCGA-VS-A9UB-01 X 70147463 70147463 A G SLC7A3 Missense_Mutation p.S352P 0.24 deleterious(0.01) possibly_damaging(0.905) TCGA-VS-A9UC-01 10 102894087 102894087 G A TLX1 Missense_Mutation p.D242N 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A9UC-01 10 116603647 116603647 C T FAM160B1 Nonsense_Mutation p.Q322* 0.07 TCGA-VS-A9UC-01 10 117061506 117061506 C G ATRNL1 Missense_Mutation p.S924C 0.05 deleterious(0) probably_damaging(1) TCGA-VS-A9UC-01 10 120794845 120794845 G A EIF3A 3'UTR 0.35 TCGA-VS-A9UC-01 10 131639295 131639295 G A EBF3 Silent p.V449V 0.28 TCGA-VS-A9UC-01 10 132890756 132890756 C G TCERG1L 3'UTR 0.07 TCGA-VS-A9UC-01 10 25226165 25226165 G C PRTFDC1 Nonsense_Mutation p.S96* 0.33 TCGA-VS-A9UC-01 10 27539713 27539713 G C RP11-85G18.6 RNA 0.28 TCGA-VS-A9UC-01 10 30727938 30727938 C G MAP3K8 Missense_Mutation p.S24C 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.885) TCGA-VS-A9UC-01 10 50118299 50118299 G A LRRC18 Missense_Mutation p.R257C 0.31 deleterious(0) benign(0.358) TCGA-VS-A9UC-01 10 51768854 51768854 G A AGAP6 Missense_Mutation p.M323I 0.36 tolerated(0.1) probably_damaging(0.975) TCGA-VS-A9UC-01 10 73611010 73611010 G A PSAP 5'UTR 0.37 TCGA-VS-A9UC-01 11 10328462 10328462 G T ADM 3'UTR 0.34 TCGA-VS-A9UC-01 11 113856792 113856792 G C HTR3A Missense_Mutation p.R206S 0.41 deleterious(0) benign(0.197) TCGA-VS-A9UC-01 11 118123001 118123001 C G MPZL3 Missense_Mutation p.Q3H 0.26 tolerated_low_confidence(0.12) benign(0.003) TCGA-VS-A9UC-01 11 124189525 124189525 G C OR8D2 Missense_Mutation p.S190C 0.34 deleterious(0.01) benign(0.067) TCGA-VS-A9UC-01 11 128840096 128840096 G C ARHGAP32 Missense_Mutation p.S1657C 0.42 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-VS-A9UC-01 11 14277295 14277295 C G SPON1 RNA 0.06 TCGA-VS-A9UC-01 11 16823259 16823259 C T PLEKHA7 Missense_Mutation p.E755K 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A9UC-01 11 18743460 18743460 C T IGSF22 Missense_Mutation p.E80K 0.41 deleterious(0) benign(0.179) TCGA-VS-A9UC-01 11 19253860 19253860 C G E2F8 Missense_Mutation p.K329N 0.39 deleterious(0) probably_damaging(1) TCGA-VS-A9UC-01 11 57507612 57507612 G A TMX2 Silent p.Q262Q 0.24 TCGA-VS-A9UC-01 11 64453366 64453366 G C NRXN2 Missense_Mutation p.L302V 0.39 deleterious(0.01) benign(0.004) TCGA-VS-A9UC-01 11 6549872 6549872 C T DNHD1 Missense_Mutation p.S653F 0.28 benign(0.023) TCGA-VS-A9UC-01 11 65715603 65715603 C T TSGA10IP RNA 0.28 TCGA-VS-A9UC-01 11 94040382 94040382 G A FOLR4 Missense_Mutation p.E127K 0.16 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UC-01 11 94278184 94278184 G A FUT4 Missense_Mutation p.M295I 0.31 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UC-01 11 96125311 96125311 C G JRKL Missense_Mutation p.L500V 0.13 deleterious(0.03) possibly_damaging(0.542) TCGA-VS-A9UC-01 12 111085655 111085655 C T TCTN1 Silent p.I579I 0.07 TCGA-VS-A9UC-01 12 123649944 123649944 G C MPHOSPH9 Nonsense_Mutation p.S739* 0.41 TCGA-VS-A9UC-01 12 125576014 125576014 C G AACS Missense_Mutation p.A172G 0.32 deleterious(0.02) possibly_damaging(0.558) TCGA-VS-A9UC-01 12 133196067 133196067 G C P2RX2 Silent p.T72T 0.40 TCGA-VS-A9UC-01 12 52992825 52992825 G T KRT72 Missense_Mutation p.N166K 0.25 tolerated(0.38) possibly_damaging(0.744) TCGA-VS-A9UC-01 12 54379467 54379467 G A HOXC10 Missense_Mutation p.E142K 0.08 deleterious(0.02) benign(0.164) TCGA-VS-A9UC-01 12 56572612 56572612 G A SMARCC2 Silent p.S387S 0.30 TCGA-VS-A9UC-01 12 62986902 62986902 A G MON2 3'UTR 0.26 TCGA-VS-A9UC-01 12 6973946 6973946 G A USP5 Missense_Mutation p.E769K 0.24 tolerated(0.35) possibly_damaging(0.842) TCGA-VS-A9UC-01 12 75687112 75687112 G A CAPS2 Silent p.L379L 0.05 TCGA-VS-A9UC-01 12 8756395 8756395 C T AICDA 3'UTR 0.29 TCGA-VS-A9UC-01 13 102051517 102051517 C T NALCN Splice_Site 0.11 TCGA-VS-A9UC-01 13 114507891 114507891 G A TMEM255B Missense_Mutation p.V235I 0.15 tolerated(0.27) benign(0.103) TCGA-VS-A9UC-01 13 23905787 23905787 C G SACS Missense_Mutation p.L4076F 0.07 probably_damaging(0.994) TCGA-VS-A9UC-01 13 31034821 31034821 A G HMGB1 3'UTR 0.16 TCGA-VS-A9UC-01 13 73649905 73649905 G A KLF5 Missense_Mutation p.E419K 0.58 deleterious(0) probably_damaging(0.982) TCGA-VS-A9UC-01 14 105268098 105268098 G T ZBTB42 Silent p.L188L 0.13 TCGA-VS-A9UC-01 14 20586150 20586150 G A OR4K17 Silent p.V195V 0.21 TCGA-VS-A9UC-01 14 21679060 21679060 C G HNRNPC 3'UTR 0.08 TCGA-VS-A9UC-01 14 24769241 24769241 G A NOP9 Silent p.G27G 0.29 TCGA-VS-A9UC-01 14 57268254 57268254 G A OTX2 3'UTR 0.34 TCGA-VS-A9UC-01 14 61177952 61177952 C G SIX4 3'UTR 0.27 TCGA-VS-A9UC-01 14 70924991 70924991 G C ADAM21 Missense_Mutation p.E259Q 0.27 deleterious(0) probably_damaging(0.927) TCGA-VS-A9UC-01 14 77925967 77925967 G A AHSA1 Missense_Mutation p.R30K 0.36 tolerated(0.3) possibly_damaging(0.747) TCGA-VS-A9UC-01 15 22998469 22998469 A T CYFIP1 Missense_Mutation p.Y1054F 0.42 tolerated(0.14) benign(0.049) TCGA-VS-A9UC-01 15 41063725 41063725 G A C15orf62 3'UTR 0.19 TCGA-VS-A9UC-01 15 42127382 42127382 G A JMJD7-PLA2G4B Missense_Mutation p.D145N 0.42 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-VS-A9UC-01 15 43785307 43785307 G C TP53BP1 5'UTR 0.43 TCGA-VS-A9UC-01 15 43927595 43927595 C T CATSPER2 Missense_Mutation p.E381K 0.44 tolerated(0.31) benign(0.055) TCGA-VS-A9UC-01 15 65411174 65411174 C T PDCD7 Missense_Mutation p.D447N 0.18 deleterious(0.03) benign(0.075) TCGA-VS-A9UC-01 15 75632378 75632378 G A COMMD4 3'UTR 0.26 TCGA-VS-A9UC-01 15 78398113 78398113 C T CIB2 Silent p.E170E 0.21 TCGA-VS-A9UC-01 15 79586408 79586408 C T ANKRD34C Missense_Mutation p.S261L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A9UC-01 16 11063123 11063123 C T CLEC16A Missense_Mutation p.S150L 0.49 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UC-01 16 14761502 14761502 C T BFAR Nonsense_Mutation p.Q391* 0.13 TCGA-VS-A9UC-01 16 1877711 1877711 G A FAHD1 Missense_Mutation p.E161K 0.53 tolerated(0.2) benign(0) TCGA-VS-A9UC-01 16 30093840 30093840 C T PPP4C Silent p.L62L 0.07 TCGA-VS-A9UC-01 16 3447208 3447208 C T ZSCAN32 5'UTR 0.10 TCGA-VS-A9UC-01 16 53476628 53476628 C G RBL2 Missense_Mutation p.H144D 0.07 tolerated(0.51) benign(0.001) TCGA-VS-A9UC-01 16 57790279 57790279 C T KATNB1 Missense_Mutation p.T577M 0.47 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UC-01 16 66850549 66850549 G A NAE1 Missense_Mutation p.P259S 0.36 tolerated(0.36) benign(0.001) TCGA-VS-A9UC-01 16 69711136 69711136 C G NFAT5 Missense_Mutation p.H530D 0.23 benign(0.315) TCGA-VS-A9UC-01 16 69726783 69726783 C T NFAT5 Nonsense_Mutation p.Q1019* 0.10 TCGA-VS-A9UC-01 16 71961893 71961893 C G IST1 3'Flank 0.68 TCGA-VS-A9UC-01 16 9212295 9212295 C T C16orf72 3'UTR 0.04 TCGA-VS-A9UC-01 17 16725854 16725854 G C AC022596.6 RNA 0.31 TCGA-VS-A9UC-01 17 19582095 19582095 C T SLC47A2 Silent p.V571V 0.07 TCGA-VS-A9UC-01 17 27232483 27232483 G A PHF12 3'UTR 0.29 TCGA-VS-A9UC-01 17 27959356 27959356 G C SSH2 Silent p.L925L 0.32 TCGA-VS-A9UC-01 17 28326968 28326968 A G EFCAB5 Missense_Mutation p.R340G 0.40 tolerated(0.23) benign(0.002) TCGA-VS-A9UC-01 17 29221708 29221708 G C ATAD5 Missense_Mutation p.E1808D 0.27 deleterious(0) probably_damaging(0.99) TCGA-VS-A9UC-01 17 29579967 29579967 C T NF1 Silent p.H1374H 0.37 TCGA-VS-A9UC-01 17 38176167 38176167 G C MED24 Missense_Mutation p.I908M 0.30 tolerated(0.07) benign(0.003) TCGA-VS-A9UC-01 17 40825503 40825503 C T PLEKHH3 Missense_Mutation p.E188K 0.13 tolerated(0.32) unknown(0) TCGA-VS-A9UC-01 17 42982455 42982455 C T FAM187A 3'UTR 0.06 TCGA-VS-A9UC-01 17 4844284 4844284 G A RNF167 Missense_Mutation p.R27Q 0.35 tolerated(0.27) probably_damaging(0.953) TCGA-VS-A9UC-01 17 50008449 50008449 G A CA10 Silent p.C60C 0.38 TCGA-VS-A9UC-01 17 6482960 6482960 C A KIAA0753 3'UTR 0.38 TCGA-VS-A9UC-01 17 7076861 7076861 C T ASGR1 3'UTR 0.36 TCGA-VS-A9UC-01 17 7077454 7077454 C T ASGR1 Intron 0.33 TCGA-VS-A9UC-01 17 71397270 71397270 G A SDK2 Missense_Mutation p.R954C 0.39 deleterious(0) probably_damaging(0.993) TCGA-VS-A9UC-01 18 12701083 12701083 G A CEP76 Silent p.I31I 0.32 TCGA-VS-A9UC-01 18 21479386 21479386 G C LAMA3 Missense_Mutation p.E1991Q 0.18 possibly_damaging(0.493) TCGA-VS-A9UC-01 18 47340015 47340015 G A ACAA2 5'UTR 0.30 TCGA-VS-A9UC-01 18 47340258 47340258 G A ACAA2 5'UTR 0.16 TCGA-VS-A9UC-01 18 51057163 51057163 G A DCC 3'UTR 0.34 TCGA-VS-A9UC-01 19 12856340 12856340 G C ASNA1 Splice_Site p.X153_splice 0.52 TCGA-VS-A9UC-01 19 12866675 12866675 G C BEST2 Missense_Mutation p.E292Q 0.35 deleterious(0.01) possibly_damaging(0.708) TCGA-VS-A9UC-01 19 1578440 1578440 C G MBD3 Missense_Mutation p.E259Q 0.27 tolerated_low_confidence(0.06) benign(0.107) TCGA-VS-A9UC-01 19 19626952 19626952 G A NDUFA13 5'UTR 0.31 TCGA-VS-A9UC-01 19 39882115 39882115 C G MED29 Missense_Mutation p.S39W 0.06 deleterious(0.03) possibly_damaging(0.854) TCGA-VS-A9UC-01 19 40521389 40521389 C G ZNF546 Missense_Mutation p.Q738E 0.34 tolerated(1) benign(0.149) TCGA-VS-A9UC-01 19 40741033 40741033 G A AKT2 Nonsense_Mutation p.Q429* 0.21 TCGA-VS-A9UC-01 19 49671193 49671193 G A TRPM4 Missense_Mutation p.R96Q 0.35 tolerated(0.59) possibly_damaging(0.768) TCGA-VS-A9UC-01 19 50354316 50354316 C T PTOV1 5'Flank 0.27 TCGA-VS-A9UC-01 19 50962411 50962411 C T MYBPC2 Missense_Mutation p.P880L 0.14 tolerated(0.14) benign(0.221) TCGA-VS-A9UC-01 19 55753805 55753805 C T PPP6R1 Missense_Mutation p.E224K 0.06 deleterious(0) possibly_damaging(0.825) TCGA-VS-A9UC-01 19 55869527 55869527 C T FAM71E2 Silent p.L903L 0.05 TCGA-VS-A9UC-01 19 57325937 57325937 G T PEG3 Missense_Mutation p.F1291L 0.30 tolerated(0.08) possibly_damaging(0.872) TCGA-VS-A9UC-01 19 5951471 5951471 G A RANBP3 Missense_Mutation p.S72L 0.29 tolerated_low_confidence(0.09) benign(0.004) TCGA-VS-A9UC-01 19 8645864 8645864 G C ADAMTS10 Silent p.V1075V 0.29 TCGA-VS-A9UC-01 19 9086543 9086543 G A MUC16 Missense_Mutation p.P1758S 0.42 unknown(0) TCGA-VS-A9UC-01 1 101005820 101005820 C T GPR88 3'UTR 0.33 TCGA-VS-A9UC-01 1 101007457 101007457 C T GPR88 3'UTR 0.10 TCGA-VS-A9UC-01 1 117484413 117484413 C T PTGFRN Silent p.P42P 0.11 TCGA-VS-A9UC-01 1 152188400 152188400 G C HRNR Missense_Mutation p.S1902C 0.04 unknown(0) TCGA-VS-A9UC-01 1 152595437 152595437 C T LCE3A Missense_Mutation p.C48Y 0.19 tolerated_low_confidence(0.07) unknown(0) TCGA-VS-A9UC-01 1 154248263 154248263 C T HAX1 3'UTR 0.28 TCGA-VS-A9UC-01 1 154306631 154306631 G A ATP8B2 Missense_Mutation p.G246E 0.19 deleterious(0) probably_damaging(1) TCGA-VS-A9UC-01 1 154520125 154520125 C G TDRD10 3'UTR 0.20 TCGA-VS-A9UC-01 1 154960967 154960967 C G FLAD1 Silent p.L253L 0.05 TCGA-VS-A9UC-01 1 155638472 155638472 C T YY1AP1 Silent p.L413L 0.12 TCGA-VS-A9UC-01 1 155638531 155638531 C T YY1AP1 Missense_Mutation p.E394K 0.09 tolerated(0.11) benign(0.247) TCGA-VS-A9UC-01 1 156145423 156145423 C T SEMA4A Missense_Mutation p.R557W 0.44 deleterious(0.04) possibly_damaging(0.586) TCGA-VS-A9UC-01 1 156237348 156237348 C T SMG5 Missense_Mutation p.E344K 0.42 tolerated(0.28) probably_damaging(0.978) TCGA-VS-A9UC-01 1 156641862 156641862 C T NES Silent p.E706E 0.15 TCGA-VS-A9UC-01 1 161188033 161188033 C T FCER1G Silent p.I48I 0.30 TCGA-VS-A9UC-01 1 171310776 171310776 G A FMO4 Missense_Mutation p.R492K 0.62 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UC-01 1 17371370 17371370 G A SDHB Missense_Mutation p.A29V 0.25 tolerated_low_confidence(0.17) benign(0.001) TCGA-VS-A9UC-01 1 183514367 183514367 C G SMG7 Missense_Mutation p.L718V 0.10 tolerated_low_confidence(0.18) benign(0.055) TCGA-VS-A9UC-01 1 192628513 192628513 C G RGS13 Missense_Mutation p.Q114E 0.32 tolerated(0.13) benign(0.009) TCGA-VS-A9UC-01 1 192780665 192780665 C G RGS2 Nonsense_Mutation p.S192* 0.05 TCGA-VS-A9UC-01 1 201181874 201181874 G C IGFN1 Missense_Mutation p.R2618T 0.08 benign(0.073) TCGA-VS-A9UC-01 1 202549807 202549807 C T PPP1R12B 3'UTR 0.76 TCGA-VS-A9UC-01 1 207739256 207739256 C A CR1 Missense_Mutation p.P1314T 0.36 deleterious(0.01) possibly_damaging(0.902) TCGA-VS-A9UC-01 1 217604321 217604321 G A GPATCH2 3'UTR 0.39 TCGA-VS-A9UC-01 1 225155561 225155561 C G DNAH14 Intron 0.39 TCGA-VS-A9UC-01 1 23191701 23191701 G C EPHB2 Missense_Mutation p.Q433H 0.35 tolerated(0.12) benign(0.164) TCGA-VS-A9UC-01 1 232575078 232575078 C T SIPA1L2 Silent p.T1269T 0.39 TCGA-VS-A9UC-01 1 232942585 232942585 C T MAP10 Nonsense_Mutation p.Q606* 0.27 TCGA-VS-A9UC-01 1 31437538 31437538 G C PUM1 Missense_Mutation p.S769C 0.36 deleterious(0) probably_damaging(0.973) TCGA-VS-A9UC-01 1 31437602 31437602 G A PUM1 Missense_Mutation p.L748F 0.36 deleterious(0.02) possibly_damaging(0.806) TCGA-VS-A9UC-01 1 32660659 32660659 G A TXLNA Missense_Mutation p.E502K 0.24 tolerated(0.33) benign(0.031) TCGA-VS-A9UC-01 1 35453478 35453478 C T ZMYM6 Missense_Mutation p.E1069K 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.721) TCGA-VS-A9UC-01 1 38482257 38482257 C T UTP11L Intron 0.36 TCGA-VS-A9UC-01 1 53544146 53544146 C T PODN Missense_Mutation p.R370W 0.42 deleterious(0.02) benign(0.019) TCGA-VS-A9UC-01 1 66083763 66083763 C G LEPR Missense_Mutation p.L777V 0.06 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UC-01 1 87597750 87597750 C G RP5-1052I5.2 Intron 0.44 TCGA-VS-A9UC-01 1 9027734 9027734 G C CA6 Silent p.L196L 0.37 TCGA-VS-A9UC-01 20 20013775 20013775 G A NAA20 Missense_Mutation p.E161K 0.47 tolerated(0.29) benign(0.003) TCGA-VS-A9UC-01 20 30064561 30064561 G C REM1 Missense_Mutation p.E105Q 0.12 deleterious(0.01) benign(0.165) TCGA-VS-A9UC-01 20 306742 306742 C A SOX12 Silent p.I58I 0.45 TCGA-VS-A9UC-01 20 307308 307308 C T SOX12 Missense_Mutation p.S247L 0.44 tolerated(0.29) unknown(0) TCGA-VS-A9UC-01 20 307589 307589 C G SOX12 3'UTR 0.22 TCGA-VS-A9UC-01 20 34743107 34743107 C G EPB41L1 Intron 0.26 TCGA-VS-A9UC-01 20 36720123 36720123 G A RPRD1B 3'UTR 0.57 TCGA-VS-A9UC-01 20 39795150 39795150 G A PLCG1 Missense_Mutation p.E679K 0.09 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UC-01 20 41419891 41419891 C T PTPRT Missense_Mutation p.E144K 0.38 tolerated(0.41) probably_damaging(0.995) TCGA-VS-A9UC-01 20 61491513 61491513 G A TCFL5 Silent p.C265C 0.32 TCGA-VS-A9UC-01 21 15688599 15688599 C T ABCC13 RNA 0.18 TCGA-VS-A9UC-01 21 28338424 28338424 C T ADAMTS5 Missense_Mutation p.R96Q 0.44 tolerated(0.62) benign(0.041) TCGA-VS-A9UC-01 21 45077971 45077971 C T HSF2BP Missense_Mutation p.E3K 0.36 tolerated_low_confidence(0.07) possibly_damaging(0.81) TCGA-VS-A9UC-01 21 46918342 46918342 G A COL18A1 Intron 0.40 TCGA-VS-A9UC-01 22 22749809 22749809 C G IGLV7-43 Silent p.L111L 0.35 TCGA-VS-A9UC-01 22 23090191 23090191 G A IGLV3-16 Missense_Mutation p.E44K 0.09 deleterious(0.01) benign(0.062) TCGA-VS-A9UC-01 22 25320240 25320240 G T SGSM1 Nonstop_Mutation p.*1149Lext*72 0.31 TCGA-VS-A9UC-01 22 39909880 39909880 C G MIEF1 Nonsense_Mutation p.S315* 0.07 TCGA-VS-A9UC-01 22 46655887 46655887 C G PKDREJ Missense_Mutation p.Q1111H 0.45 deleterious(0) probably_damaging(0.969) TCGA-VS-A9UC-01 2 108488593 108488593 G A RGPD4 Missense_Mutation p.G1378D 0.29 deleterious(0.04) probably_damaging(1) TCGA-VS-A9UC-01 2 165552170 165552170 C - COBLL1 Frame_Shift_Del p.E616Kfs*4 0.26 TCGA-VS-A9UC-01 2 175213747 175213747 A T CIR1 Missense_Mutation p.S277R 0.30 deleterious_low_confidence(0.03) unknown(0) TCGA-VS-A9UC-01 2 1891353 1891353 G A MYT1L Missense_Mutation p.A848V 0.56 tolerated(0.35) benign(0.053) TCGA-VS-A9UC-01 2 228786114 228786114 G C DAW1 Splice_Site p.X351_splice 0.50 TCGA-VS-A9UC-01 2 228882360 228882360 C G SPHKAP Silent p.L1070L 0.42 TCGA-VS-A9UC-01 2 23929503 23929503 T C KLHL29 Missense_Mutation p.V866A 0.16 deleterious(0.05) possibly_damaging(0.7) TCGA-VS-A9UC-01 2 37586994 37586994 C T QPCT Missense_Mutation p.S180F 0.04 tolerated(0.08) benign(0.029) TCGA-VS-A9UC-01 2 39239466 39239466 C A SOS1 Nonsense_Mutation p.E731* 0.13 TCGA-VS-A9UC-01 2 48025776 48025776 G C MSH6 Missense_Mutation p.K218N 0.06 tolerated(0.44) benign(0.022) TCGA-VS-A9UC-01 2 48808686 48808686 G A STON1-GTF2A1L Missense_Mutation p.G305E 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A9UC-01 2 74733110 74733110 C G PCGF1 Missense_Mutation p.E167Q 0.04 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UC-01 2 97589307 97589307 C T FAM178B Missense_Mutation p.E403K 0.36 tolerated(0.21) benign(0.04) TCGA-VS-A9UC-01 3 121410367 121410367 G C GOLGB1 Missense_Mutation p.S2615C 0.18 benign(0.382) TCGA-VS-A9UC-01 3 121712279 121712279 G C ILDR1 Missense_Mutation p.F439L 0.25 tolerated(0.66) benign(0) TCGA-VS-A9UC-01 3 129276031 129276031 C G PLXND1 Missense_Mutation p.E1827D 0.18 tolerated(0.48) possibly_damaging(0.874) TCGA-VS-A9UC-01 3 132169525 132169525 C G DNAJC13 Nonsense_Mutation p.S124* 0.23 TCGA-VS-A9UC-01 3 135868676 135868676 T C MSL2 3'UTR 0.70 TCGA-VS-A9UC-01 3 142029616 142029616 G C XRN1 3'UTR 0.32 TCGA-VS-A9UC-01 3 159713292 159713292 C T IL12A Silent p.F236F 0.25 TCGA-VS-A9UC-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.28 deleterious(0.02) probably_damaging(0.959) TCGA-VS-A9UC-01 3 180397189 180397189 G A CCDC39 5'UTR 0.16 TCGA-VS-A9UC-01 3 184910996 184910996 G C EHHADH Nonsense_Mutation p.S397* 0.33 TCGA-VS-A9UC-01 3 194387219 194387219 G C LSG1 Silent p.L103L 0.74 TCGA-VS-A9UC-01 3 196158754 196158754 G C UBXN7 Intron 0.36 TCGA-VS-A9UC-01 3 37818892 37818892 G C ITGA9 Missense_Mutation p.E851Q 0.35 tolerated(0.26) possibly_damaging(0.653) TCGA-VS-A9UC-01 3 49094296 49094296 G A QRICH1 Missense_Mutation p.S446L 0.21 tolerated(0.45) benign(0.001) TCGA-VS-A9UC-01 3 9517572 9517572 C T SETD5 Nonsense_Mutation p.Q1376* 0.34 TCGA-VS-A9UC-01 4 13601289 13601289 G C BOD1L1 Nonsense_Mutation p.S2412* 0.35 TCGA-VS-A9UC-01 4 166915571 166915571 C T TLL1 Silent p.L134L 0.15 TCGA-VS-A9UC-01 4 16900109 16900109 C T LDB2 5'UTR 0.34 TCGA-VS-A9UC-01 4 40124752 40124752 C G N4BP2 Missense_Mutation p.L1402V 0.39 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UC-01 4 419693 419693 G A ABCA11P RNA 0.34 TCGA-VS-A9UC-01 4 56236095 56236095 C A SRD5A3 Missense_Mutation p.S265Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UC-01 4 83557850 83557850 G A SCD5 Silent p.L232L 0.36 TCGA-VS-A9UC-01 4 94690389 94690389 A G GRID2 Missense_Mutation p.M797V 0.17 deleterious(0) benign(0.261) TCGA-VS-A9UC-01 4 96127928 96127928 G A UNC5C Nonsense_Mutation p.Q585* 0.16 TCGA-VS-A9UC-01 5 100146968 100146968 C G ST8SIA4 3'UTR 0.19 TCGA-VS-A9UC-01 5 135223780 135223780 G C SLC25A48 3'UTR 0.25 TCGA-VS-A9UC-01 5 143855186 143855186 C G KCTD16 3'UTR 0.11 TCGA-VS-A9UC-01 5 150274990 150274990 G A ZNF300 Missense_Mutation p.S620L 0.07 deleterious_low_confidence(0.01) benign(0.088) TCGA-VS-A9UC-01 5 154285030 154285030 C T GEMIN5 Missense_Mutation p.R801K 0.05 tolerated(1) benign(0.001) TCGA-VS-A9UC-01 5 172517767 172517767 C A CREBRF Silent p.V195V 0.22 TCGA-VS-A9UC-01 5 175717954 175717954 G A SIMC1 Intron 0.45 TCGA-VS-A9UC-01 5 176315407 176315407 G C HK3 Silent p.L410L 0.17 TCGA-VS-A9UC-01 5 54573030 54573030 C G DHX29 Missense_Mutation p.L730F 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A9UC-01 5 54573100 54573100 C G DHX29 Missense_Mutation p.R707T 0.28 deleterious(0) probably_damaging(1) TCGA-VS-A9UC-01 5 64023989 64023989 C T SREK1IP1 Missense_Mutation p.E75K 0.08 tolerated(0.17) unknown(0) TCGA-VS-A9UC-01 5 66350276 66350276 C A MAST4 Nonsense_Mutation p.S240* 0.44 TCGA-VS-A9UC-01 5 68665590 68665590 C T TAF9 5'UTR 0.27 TCGA-VS-A9UC-01 5 82360049 82360049 C T TMEM167A Intron 0.21 TCGA-VS-A9UC-01 6 105528536 105528536 G A LIN28B 3'UTR 0.11 TCGA-VS-A9UC-01 6 147123923 147123923 G A ADGB Intron 0.08 TCGA-VS-A9UC-01 6 21596155 21596155 G C SOX4 Missense_Mutation p.E464Q 0.09 deleterious(0) unknown(0) TCGA-VS-A9UC-01 6 31696452 31696452 G A DDAH2 Missense_Mutation p.T123M 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-VS-A9UC-01 6 33156902 33156902 G A COL11A2 Missense_Mutation p.P99L 0.20 benign(0.3) TCGA-VS-A9UC-01 6 49448713 49448713 G A CENPQ Missense_Mutation p.D133N 0.06 tolerated(1) benign(0.022) TCGA-VS-A9UC-01 6 51712741 51712741 G C PKHD1 Missense_Mutation p.P2647A 0.07 tolerated(0.35) benign(0.008) TCGA-VS-A9UC-01 6 6222309 6222309 C T F13A1 Missense_Mutation p.E357K 0.23 deleterious(0.01) possibly_damaging(0.755) TCGA-VS-A9UC-01 7 107880462 107880462 C G NRCAM Missense_Mutation p.R16T 0.45 tolerated(0.24) benign(0.083) TCGA-VS-A9UC-01 7 116403157 116403157 G A MET Silent p.L824L 0.07 TCGA-VS-A9UC-01 7 150269454 150269454 C T GIMAP4 Missense_Mutation p.T99M 0.32 tolerated(0.05) possibly_damaging(0.889) TCGA-VS-A9UC-01 7 150706129 150706129 G A NOS3 Missense_Mutation p.E742K 0.11 tolerated(0.28) benign(0.003) TCGA-VS-A9UC-01 7 151873329 151873329 C G KMT2C Missense_Mutation p.R3070T 0.35 probably_damaging(0.998) TCGA-VS-A9UC-01 7 152132908 152132908 C A KMT2C 5'UTR 0.16 TCGA-VS-A9UC-01 7 2703952 2703952 C G TTYH3 3'UTR 0.33 TCGA-VS-A9UC-01 7 43982392 43982392 C G UBE2D4 Intron 0.11 TCGA-VS-A9UC-01 7 51097035 51097035 G A COBL Silent p.H586H 0.07 TCGA-VS-A9UC-01 7 63981609 63981609 T A ZNF680 Missense_Mutation p.H508L 0.30 deleterious(0) benign(0.169) TCGA-VS-A9UC-01 7 64453199 64453199 G C ERV3-1 Nonsense_Mutation p.S69* 0.33 TCGA-VS-A9UC-01 7 8128145 8128145 A G GLCCI1 3'UTR 0.48 TCGA-VS-A9UC-01 7 92134098 92134098 G A PEX1 Silent p.V673V 0.42 TCGA-VS-A9UC-01 7 99013763 99013763 G C BUD31 Missense_Mutation p.E33Q 0.31 tolerated(0.3) possibly_damaging(0.687) TCGA-VS-A9UC-01 7 99817389 99817389 G A PVRIG 5'UTR 0.23 TCGA-VS-A9UC-01 8 131812783 131812783 C T ADCY8 Silent p.V983V 0.18 TCGA-VS-A9UC-01 8 145763108 145763108 C T ARHGAP39 Missense_Mutation p.D871N 0.30 tolerated(0.09) benign(0.075) TCGA-VS-A9UC-01 8 24810010 24810010 C A CTD-2168K21.2 5'Flank 0.25 TCGA-VS-A9UC-01 8 27657104 27657104 C G ESCO2 Missense_Mutation p.S515C 0.26 deleterious(0.02) possibly_damaging(0.827) TCGA-VS-A9UC-01 8 33416243 33416243 C T RNF122 Silent p.S24S 0.34 TCGA-VS-A9UC-01 8 38705488 38705488 G A TACC1 Missense_Mutation p.E789K 0.06 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UC-01 8 41469437 41469437 G A AGPAT6 Missense_Mutation p.M209I 0.42 tolerated(0.07) benign(0) TCGA-VS-A9UC-01 8 41519366 41519366 G A ANK1 Intron 0.16 TCGA-VS-A9UC-01 8 65494639 65494639 G A BHLHE22 3'UTR 0.06 TCGA-VS-A9UC-01 8 74722834 74722834 G A UBE2W Missense_Mutation p.H121Y 0.23 deleterious(0.04) possibly_damaging(0.732) TCGA-VS-A9UC-01 9 105765522 105765522 C T CYLC2 Nonsense_Mutation p.Q53* 0.31 TCGA-VS-A9UC-01 9 111782741 111782741 C T TMEM245 Silent p.%3D 0.38 TCGA-VS-A9UC-01 9 127265389 127265389 C T NR5A1 Silent p.Q71Q 0.37 TCGA-VS-A9UC-01 9 130586652 130586652 G C ENG Silent p.L355L 0.34 TCGA-VS-A9UC-01 9 131484991 131484991 G A ZDHHC12 Intron 0.29 TCGA-VS-A9UC-01 9 139302314 139302314 G A SDCCAG3 Silent p.L122L 0.36 TCGA-VS-A9UC-01 9 140174597 140174597 G C TOR4A 3'UTR 0.35 TCGA-VS-A9UC-01 9 140176412 140176412 G C TOR4A 3'UTR 0.20 TCGA-VS-A9UC-01 9 71155629 71155629 G C TMEM252 Missense_Mutation p.F34L 0.08 tolerated(0.47) benign(0.016) TCGA-VS-A9UC-01 9 95991989 95991989 C T WNK2 Silent p.L231L 0.24 TCGA-VS-A9UC-01 9 96318676 96318676 G C FAM120A Missense_Mutation p.D763H 0.10 deleterious(0.03) possibly_damaging(0.604) TCGA-VS-A9UC-01 X 100276103 100276103 G C TRMT2B Missense_Mutation p.I351M 0.08 deleterious(0) benign(0.403) TCGA-VS-A9UC-01 X 101908766 101908766 A G GPRASP1 5'UTR 0.42 TCGA-VS-A9UC-01 X 102632279 102632279 G T NGFRAP1 Intron 0.33 TCGA-VS-A9UC-01 X 106144034 106144034 G C RIPPLY1 Nonsense_Mutation p.S134* 0.32 TCGA-VS-A9UC-01 X 119694297 119694297 G A CUL4B Missense_Mutation p.S84F 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.459) TCGA-VS-A9UC-01 X 122757057 122757057 C T THOC2 Missense_Mutation p.R1194K 0.25 tolerated(0.58) benign(0.002) TCGA-VS-A9UC-01 X 149638071 149638071 G A MAMLD1 Missense_Mutation p.D51N 0.23 deleterious(0) probably_damaging(0.984) TCGA-VS-A9UC-01 X 16170503 16170503 C T GRPR Missense_Mutation p.S297F 0.06 deleterious(0) probably_damaging(1) TCGA-VS-A9UC-01 X 48780339 48780339 G A OTUD5 3'UTR 0.17 TCGA-VS-A9UC-01 X 49851452 49851452 C A CLCN5 Silent p.V494V 0.28 TCGA-VS-A9UC-01 X 49858092 49858092 C T CLCN5 3'UTR 0.34 TCGA-VS-A9UC-01 X 63407276 63407276 C T AMER1 3'UTR 0.41 TCGA-VS-A9UC-01 X 69424996 69424996 G C DGAT2L6 3'UTR 0.39 TCGA-VS-A9UC-01 X 77289259 77289259 G C ATP7A Missense_Mutation p.D1151H 0.35 deleterious(0.05) benign(0.411) TCGA-VS-A9UC-01 X 84526754 84526754 G T ZNF711 Nonsense_Mutation p.E736* 0.23 TCGA-VS-A9UD-01 10 102055942 102055942 G A PKD2L1 Silent p.L431L 0.43 TCGA-VS-A9UD-01 10 113935434 113935434 G C GPAM Missense_Mutation p.L113V 0.35 tolerated(0.07) probably_damaging(0.996) TCGA-VS-A9UD-01 10 18254465 18254465 T C SLC39A12 Silent p.G199G 0.56 TCGA-VS-A9UD-01 10 32150508 32150508 C T ARHGAP12 Missense_Mutation p.A255T 0.12 tolerated(0.19) benign(0.002) TCGA-VS-A9UD-01 10 60566788 60566788 C T BICC1 Missense_Mutation p.T749M 0.71 deleterious(0) possibly_damaging(0.898) TCGA-VS-A9UD-01 10 61549588 61549588 G T CCDC6 3'UTR 0.63 TCGA-VS-A9UD-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.58 TCGA-VS-A9UD-01 11 117161764 117161764 G A BACE1 Missense_Mutation p.T315M 0.35 deleterious(0.03) probably_damaging(0.995) TCGA-VS-A9UD-01 11 124767021 124767021 C T ROBO4 Silent p.G69G 0.17 TCGA-VS-A9UD-01 11 47650585 47650585 G A MTCH2 Missense_Mutation p.R185C 0.79 deleterious(0.02) benign(0.262) TCGA-VS-A9UD-01 11 5905757 5905757 A G OR52E4 Missense_Mutation p.T79A 0.43 deleterious(0.03) possibly_damaging(0.849) TCGA-VS-A9UD-01 12 107367619 107367619 G A C12orf23 3'UTR 0.21 TCGA-VS-A9UD-01 12 110463544 110463544 C G ANKRD13A Intron 0.31 TCGA-VS-A9UD-01 12 120210584 120210584 A G CIT Missense_Mutation p.V691A 0.30 tolerated(0.74) benign(0.007) TCGA-VS-A9UD-01 12 124841202 124841202 G A NCOR2 Missense_Mutation p.S1076F 0.30 probably_damaging(0.935) TCGA-VS-A9UD-01 12 132681773 132681773 G A GALNT9 Missense_Mutation p.T198M 0.34 deleterious(0) probably_damaging(0.957) TCGA-VS-A9UD-01 12 133151057 133151057 G A FBRSL1 Silent p.L579L 0.42 TCGA-VS-A9UD-01 12 31253996 31253996 G A DDX11 Missense_Mutation p.V662I 0.60 tolerated(0.65) benign(0.031) TCGA-VS-A9UD-01 12 427353 427353 T C KDM5A Missense_Mutation p.E939G 0.41 deleterious(0) possibly_damaging(0.747) TCGA-VS-A9UD-01 12 48119273 48119273 C T ENDOU 5'UTR 0.28 TCGA-VS-A9UD-01 12 48367934 48367934 C T COL2A1 Missense_Mutation p.V1419M 0.44 unknown(0) TCGA-VS-A9UD-01 12 54338873 54338873 G A HOXC13 Missense_Mutation p.E276K 0.46 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UD-01 12 57602561 57602561 C T LRP1 Missense_Mutation p.R4036W 0.22 probably_damaging(1) TCGA-VS-A9UD-01 12 57603840 57603840 C T LRP1 Silent p.C4156C 0.32 TCGA-VS-A9UD-01 12 57864115 57864115 G T GLI1 Missense_Mutation p.R531L 0.26 tolerated(0.06) probably_damaging(0.996) TCGA-VS-A9UD-01 12 68720794 68720794 C T MDM1 Silent p.T47T 0.14 TCGA-VS-A9UD-01 12 85547466 85547466 A T LRRIQ1 Missense_Mutation p.T1523S 0.39 tolerated(0.45) benign(0.445) TCGA-VS-A9UD-01 12 91498007 91498007 C T LUM Missense_Mutation p.E318K 0.37 tolerated(0.16) benign(0.004) TCGA-VS-A9UD-01 13 100617557 100617557 G A ZIC5 3'UTR 0.61 TCGA-VS-A9UD-01 13 29599229 29599229 C A MTUS2 Missense_Mutation p.L142M 0.70 deleterious(0.01) possibly_damaging(0.885) TCGA-VS-A9UD-01 13 37618267 37618267 A G SUPT20H Missense_Mutation p.L115S 0.33 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UD-01 14 100758698 100758698 G A SLC25A29 Silent p.G278G 0.37 TCGA-VS-A9UD-01 14 104173474 104173474 G A XRCC3 Missense_Mutation p.A91V 0.36 tolerated(0.29) benign(0.109) TCGA-VS-A9UD-01 14 36192293 36192293 G C RALGAPA1 Missense_Mutation p.L682V 0.42 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UD-01 14 45679596 45679596 C G MIS18BP1 Missense_Mutation p.G1047R 0.09 deleterious(0.01) benign(0.003) TCGA-VS-A9UD-01 14 51237273 51237273 C G NIN Missense_Mutation p.D423H 0.28 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UD-01 14 51443947 51443947 C T TRIM9 3'UTR 0.40 TCGA-VS-A9UD-01 14 60468797 60468797 G A LRRC9 Silent p.L881L 0.43 TCGA-VS-A9UD-01 14 74443073 74443073 T A ENTPD5 Missense_Mutation p.D199V 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A9UD-01 14 94780400 94780400 C T SERPINA6 Missense_Mutation p.V196I 0.41 tolerated(1) benign(0.001) TCGA-VS-A9UD-01 14 96777489 96777489 C T ATG2B Missense_Mutation p.D1376N 0.32 tolerated(0.13) benign(0.001) TCGA-VS-A9UD-01 15 40951639 40951639 G T CASC5 Missense_Mutation p.Q2298H 0.28 deleterious(0.02) possibly_damaging(0.693) TCGA-VS-A9UD-01 15 41230473 41230473 A G DLL4 3'UTR 0.50 TCGA-VS-A9UD-01 15 48429109 48429109 G A SLC24A5 Missense_Mutation p.G274S 0.44 tolerated(0.21) benign(0.005) TCGA-VS-A9UD-01 15 56385697 56385697 C T RFX7 Missense_Mutation p.R1410H 0.15 tolerated_low_confidence(0.13) benign(0.023) TCGA-VS-A9UD-01 15 65868985 65868985 C T PTPLAD1 3'UTR 0.29 TCGA-VS-A9UD-01 15 74425108 74425108 C T ISLR2 Missense_Mutation p.R5W 0.32 tolerated(0.18) probably_damaging(0.973) TCGA-VS-A9UD-01 15 75631016 75631016 C T COMMD4 Silent p.D57D 0.39 TCGA-VS-A9UD-01 15 79296447 79296447 G A RASGRF1 Missense_Mutation p.R732C 0.55 deleterious(0.02) probably_damaging(0.977) TCGA-VS-A9UD-01 15 85401459 85401459 C T ALPK3 Missense_Mutation p.R1366W 0.30 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UD-01 16 10274187 10274187 C A GRIN2A Nonsense_Mutation p.E28* 0.32 TCGA-VS-A9UD-01 16 14304130 14304130 C T MKL2 Missense_Mutation p.T62M 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A9UD-01 16 18839475 18839475 G T SMG1 Missense_Mutation p.L3207I 0.46 tolerated(0.71) benign(0.007) TCGA-VS-A9UD-01 16 23117783 23117783 G A USP31 Missense_Mutation p.P266L 0.23 tolerated(0.49) benign(0.009) TCGA-VS-A9UD-01 16 29874022 29874022 G A CDIPT Silent p.F21F 0.46 TCGA-VS-A9UD-01 16 29874161 29874161 G A CDIPT Silent p.I6I 0.61 TCGA-VS-A9UD-01 16 29875667 29875667 G C CDIPT 5'Flank 0.61 TCGA-VS-A9UD-01 16 46737719 46737719 G C MYLK3 3'Flank 0.52 TCGA-VS-A9UD-01 16 50828206 50828206 C T CYLD Silent p.H851H 0.21 TCGA-VS-A9UD-01 16 67672590 67672590 C T CTCF 3'UTR 0.53 TCGA-VS-A9UD-01 16 677598 677598 G A RAB40C Silent p.S274S 0.40 TCGA-VS-A9UD-01 16 86612634 86612634 C T FOXL1 Missense_Mutation p.S102L 0.09 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UD-01 16 89595951 89595951 C G SPG7 Silent p.A275A 0.42 TCGA-VS-A9UD-01 16 89629512 89629512 G T RPL13 3'UTR 0.13 TCGA-VS-A9UD-01 17 10213051 10213051 C T MYH13 Missense_Mutation p.E1585K 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-VS-A9UD-01 17 10243654 10243654 G A MYH13 Silent p.A653A 0.42 TCGA-VS-A9UD-01 17 16332185 16332185 C G TRPV2 Missense_Mutation p.I492M 0.27 tolerated(0.11) possibly_damaging(0.864) TCGA-VS-A9UD-01 17 2598674 2598674 G A CLUH Silent p.H807H 0.30 TCGA-VS-A9UD-01 17 33935161 33935161 G T AP2B1 Missense_Mutation p.D94Y 0.28 deleterious(0) probably_damaging(0.99) TCGA-VS-A9UD-01 17 37077109 37077109 C G LASP1 3'UTR 0.39 TCGA-VS-A9UD-01 17 45452286 45452286 C T EFCAB13 Silent p.L442L 0.34 TCGA-VS-A9UD-01 17 47905838 47905838 G A KAT7 3'UTR 0.38 TCGA-VS-A9UD-01 17 54428303 54428303 G A ANKFN1 Missense_Mutation p.R125Q 0.41 deleterious(0.02) benign(0.446) TCGA-VS-A9UD-01 17 62130296 62130296 G C ERN1 Silent p.P699P 0.39 TCGA-VS-A9UD-01 17 72942883 72942883 G A OTOP3 Missense_Mutation p.M311I 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-VS-A9UD-01 17 73774795 73774795 C T H3F3B Missense_Mutation p.E98K 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.9) TCGA-VS-A9UD-01 17 73847667 73847667 G A WBP2 Silent p.V50V 0.16 TCGA-VS-A9UD-01 17 73919599 73919599 G A FBF1 Silent p.D349D 0.13 TCGA-VS-A9UD-01 17 74722535 74722535 C T JMJD6 Missense_Mutation p.R8H 0.15 deleterious(0.01) possibly_damaging(0.849) TCGA-VS-A9UD-01 17 7578191 7578191 A G TP53 Missense_Mutation p.Y220H 0.35 deleterious(0) probably_damaging(1) TCGA-VS-A9UD-01 17 76227789 76227789 C T TMEM235 5'Flank 0.20 TCGA-VS-A9UD-01 17 76462855 76462855 C T DNAH17 Missense_Mutation p.R2927Q 0.11 probably_damaging(0.998) TCGA-VS-A9UD-01 17 7684392 7684392 C T DNAH2 Silent p.I2012I 0.43 TCGA-VS-A9UD-01 17 78115610 78115610 T C EIF4A3 Missense_Mutation p.I94V 0.34 tolerated(0.15) benign(0.03) TCGA-VS-A9UD-01 17 80574441 80574441 G A WDR45B Missense_Mutation p.P296L 0.40 tolerated(0.05) benign(0.158) TCGA-VS-A9UD-01 17 80788597 80788597 C T ZNF750 Silent p.T531T 0.13 TCGA-VS-A9UD-01 17 80851476 80851476 C G TBCD Silent p.V539V 0.39 TCGA-VS-A9UD-01 18 10530812 10530812 C T NAPG Silent p.A34A 0.18 TCGA-VS-A9UD-01 18 14822628 14822628 C T ANKRD30B Missense_Mutation p.L780F 0.13 deleterious(0.01) benign(0.368) TCGA-VS-A9UD-01 18 14840607 14840607 A G ANKRD30B Silent p.T884T 0.12 TCGA-VS-A9UD-01 18 29099818 29099818 T C DSG2 Missense_Mutation p.V45A 0.22 deleterious(0.02) benign(0.01) TCGA-VS-A9UD-01 18 3094250 3094250 C T MYOM1 Missense_Mutation p.R1261Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UD-01 18 67992396 67992396 G A SOCS6 Silent p.P164P 0.74 TCGA-VS-A9UD-01 19 10506724 10506724 G A CDC37 Silent p.A86A 0.53 TCGA-VS-A9UD-01 19 10506817 10506817 G A CDC37 Silent p.R55R 0.17 TCGA-VS-A9UD-01 19 11132635 11132635 G A SMARCA4 Missense_Mutation p.G951R 0.33 probably_damaging(0.999) TCGA-VS-A9UD-01 19 1356350 1356350 C T MUM1 5'UTR 0.60 TCGA-VS-A9UD-01 19 15302422 15302422 G A NOTCH3 Silent p.N283N 0.09 TCGA-VS-A9UD-01 19 15536524 15536524 G A WIZ Silent p.F379F 0.35 TCGA-VS-A9UD-01 19 18248122 18248122 C T MAST3 Silent p.A653A 0.20 TCGA-VS-A9UD-01 19 23541910 23541910 C T ZNF91 3'UTR 0.31 TCGA-VS-A9UD-01 19 3574433 3574433 C T HMG20B Missense_Mutation p.P67L 0.56 deleterious(0.05) probably_damaging(0.999) TCGA-VS-A9UD-01 19 39395718 39395718 G A NFKBIB Silent p.S81S 0.33 TCGA-VS-A9UD-01 19 4447595 4447595 G A UBXN6 Silent p.P189P 0.40 TCGA-VS-A9UD-01 19 45716590 45716590 C T EXOC3L2 Missense_Mutation p.D323N 0.55 tolerated(0.48) probably_damaging(1) TCGA-VS-A9UD-01 19 46056966 46056966 G A OPA3 Intron 0.45 TCGA-VS-A9UD-01 19 48922518 48922518 T C GRIN2D Missense_Mutation p.M588T 0.31 deleterious(0) probably_damaging(0.914) TCGA-VS-A9UD-01 19 4941550 4941550 C T UHRF1 RNA 0.53 TCGA-VS-A9UD-01 19 49464253 49464253 C G BAX Missense_Mutation p.P186A 0.16 tolerated_low_confidence(0.2) unknown(0) TCGA-VS-A9UD-01 19 49633718 49633718 C T PPFIA3 Silent p.A247A 0.47 TCGA-VS-A9UD-01 19 5231327 5231327 C T PTPRS Missense_Mutation p.E717K 0.41 deleterious(0.04) benign(0.397) TCGA-VS-A9UD-01 19 52873174 52873174 G A ZNF880 5'Flank 0.26 TCGA-VS-A9UD-01 19 55401251 55401251 G C FCAR 3'UTR 0.47 TCGA-VS-A9UD-01 19 5562168 5562168 C A TINCR RNA 0.47 TCGA-VS-A9UD-01 19 55658260 55658260 G A TNNT1 Intron 0.19 TCGA-VS-A9UD-01 19 7692305 7692305 A - XAB2 Frame_Shift_Del p.Y116Tfs*60 0.29 TCGA-VS-A9UD-01 1 113456651 113456651 G A SLC16A1 Silent p.N455N 0.32 TCGA-VS-A9UD-01 1 114518781 114518781 G A HIPK1 3'UTR 0.31 TCGA-VS-A9UD-01 1 114640435 114640435 C T SYT6 Missense_Mutation p.D392N 0.26 deleterious(0.02) benign(0.339) TCGA-VS-A9UD-01 1 117658211 117658211 C G TRIM45 Missense_Mutation p.E485Q 0.44 tolerated(0.08) benign(0.253) TCGA-VS-A9UD-01 1 149398908 149398908 G A HIST2H3PS2 3'Flank 0.17 TCGA-VS-A9UD-01 1 150485838 150485838 C T ECM1 Silent p.N533N 0.18 TCGA-VS-A9UD-01 1 152595447 152595447 G A LCE3A Missense_Mutation p.R45C 0.47 deleterious_low_confidence(0.04) unknown(0) TCGA-VS-A9UD-01 1 154935507 154935507 G C SHC1 3'UTR 0.30 TCGA-VS-A9UD-01 1 156105035 156105035 G A LMNA Missense_Mutation p.E290K 0.19 deleterious(0) probably_damaging(0.941) TCGA-VS-A9UD-01 1 156261362 156261362 C T TMEM79 Silent p.S386S 0.42 TCGA-VS-A9UD-01 1 157504540 157504540 C T FCRL5 Nonsense_Mutation p.W515* 0.37 TCGA-VS-A9UD-01 1 158735574 158735574 G A OR6N1 Missense_Mutation p.A300V 0.11 deleterious(0.01) benign(0.134) TCGA-VS-A9UD-01 1 159176142 159176142 G A DARC Missense_Mutation p.A307T 0.28 deleterious(0.01) benign(0.351) TCGA-VS-A9UD-01 1 159846568 159846568 G T CCDC19 Intron 0.10 TCGA-VS-A9UD-01 1 1696712 1696712 C T NADK Missense_Mutation p.R45H 0.53 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-VS-A9UD-01 1 17727748 17727748 T G PADI6 RNA 0.07 TCGA-VS-A9UD-01 1 179090987 179090987 C T ABL2 Missense_Mutation p.E235K 0.44 deleterious(0.04) possibly_damaging(0.571) TCGA-VS-A9UD-01 1 180017795 180017795 G C CEP350 Missense_Mutation p.D1583H 0.51 possibly_damaging(0.452) TCGA-VS-A9UD-01 1 180854233 180854233 C T XPR1 3'UTR 0.35 TCGA-VS-A9UD-01 1 182369532 182369532 C A TEDDM1 Missense_Mutation p.G30V 0.19 deleterious(0) probably_damaging(1) TCGA-VS-A9UD-01 1 186135376 186135377 - T HMCN1 Frame_Shift_Ins p.Y5128Lfs*7 0.14 TCGA-VS-A9UD-01 1 186158689 186158689 G C HMCN1 Missense_Mutation p.L5529F 0.20 benign(0.249) TCGA-VS-A9UD-01 1 19746184 19746184 C T CAPZB Missense_Mutation p.E22K 0.20 tolerated(0.11) possibly_damaging(0.694) TCGA-VS-A9UD-01 1 200090020 200090020 C T NR5A2 Missense_Mutation p.R439C 0.34 deleterious(0.01) possibly_damaging(0.591) TCGA-VS-A9UD-01 1 205896728 205896728 C G SLC26A9 Missense_Mutation p.M369I 0.17 deleterious(0.03) benign(0.029) TCGA-VS-A9UD-01 1 214706090 214706090 G A PTPN14 Intron 0.23 TCGA-VS-A9UD-01 1 215345376 215345376 T C KCNK2 Missense_Mutation p.S225P 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-VS-A9UD-01 1 216419993 216419993 G T USH2A Missense_Mutation p.P915T 0.19 benign(0.196) TCGA-VS-A9UD-01 1 228554692 228554692 G A OBSCN Missense_Mutation p.V7439I 0.27 possibly_damaging(0.743) TCGA-VS-A9UD-01 1 2335006 2335006 C T RER1 3'UTR 0.25 TCGA-VS-A9UD-01 1 24120606 24120606 G A LYPLA2 Missense_Mutation p.V117I 0.39 tolerated(1) benign(0.001) TCGA-VS-A9UD-01 1 241797380 241797380 G A CHML Silent p.S563S 0.14 TCGA-VS-A9UD-01 1 246940114 246940114 C A RP11-439E19.10 3'Flank 0.35 TCGA-VS-A9UD-01 1 249105162 249105162 G T SH3BP5L 3'UTR 0.36 TCGA-VS-A9UD-01 1 34112389 34112389 G A CSMD2 Missense_Mutation p.R1505W 0.27 deleterious(0) probably_damaging(0.948) TCGA-VS-A9UD-01 1 3679992 3679992 C T CCDC27 Silent p.F425F 0.64 TCGA-VS-A9UD-01 1 44365263 44365263 C T ST3GAL3 Missense_Mutation p.T272M 0.47 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UD-01 1 45110700 45110700 C T RNF220 Silent p.G419G 0.33 TCGA-VS-A9UD-01 1 46655968 46655968 G A POMGNT1 Intron 0.34 TCGA-VS-A9UD-01 1 53387303 53387303 G C ECHDC2 Missense_Mutation p.R15G 0.29 tolerated(0.52) benign(0) TCGA-VS-A9UD-01 1 67724823 67724823 C G IL23R 3'UTR 0.12 TCGA-VS-A9UD-01 1 74808527 74808527 G A FPGT-TNNI3K Silent p.V342V 0.24 TCGA-VS-A9UD-01 1 75707692 75707692 T C SLC44A5 Missense_Mutation p.K176E 0.09 tolerated(0.17) benign(0.019) TCGA-VS-A9UD-01 1 7828458 7828458 G C CAMTA1 3'UTR 0.31 TCGA-VS-A9UD-01 1 91985709 91985709 T C CDC7 Silent p.G401G 0.40 TCGA-VS-A9UD-01 1 9781856 9781856 G A PIK3CD Missense_Mutation p.G665S 0.39 tolerated(0.06) possibly_damaging(0.73) TCGA-VS-A9UD-01 20 10633188 10633188 C T JAG1 Missense_Mutation p.V272I 0.24 tolerated(0.08) probably_damaging(0.968) TCGA-VS-A9UD-01 20 17492698 17492698 G A BFSP1 Nonsense_Mutation p.Q184* 0.17 TCGA-VS-A9UD-01 20 1961556 1961556 C A PDYN Nonsense_Mutation p.E60* 0.32 TCGA-VS-A9UD-01 20 20037273 20037275 CTC TT C20orf26 5'UTR 0.36 TCGA-VS-A9UD-01 20 20051645 20051645 C A C20orf26 Nonsense_Mutation p.C97* 0.27 TCGA-VS-A9UD-01 20 30738612 30738612 C T TM9SF4 Silent p.G393G 0.31 TCGA-VS-A9UD-01 20 32677565 32677565 G A EIF2S2 Nonsense_Mutation p.R325* 0.29 TCGA-VS-A9UD-01 20 35696562 35696562 C G RBL1 Missense_Mutation p.K106N 0.26 deleterious(0) probably_damaging(0.967) TCGA-VS-A9UD-01 20 40706875 40706875 A T PTPRT 3'UTR 0.46 TCGA-VS-A9UD-01 20 43034702 43034702 G A HNF4A Silent p.T40T 0.35 TCGA-VS-A9UD-01 20 44521105 44521105 T C CTSA Silent p.Y160Y 0.33 TCGA-VS-A9UD-01 20 62196178 62196178 G A HELZ2 Missense_Mutation p.R1333C 0.44 tolerated(0.15) benign(0.003) TCGA-VS-A9UD-01 20 62272512 62272512 C T STMN3 3'UTR 0.44 TCGA-VS-A9UD-01 21 11015075 11015075 T C TPTE RNA 0.40 TCGA-VS-A9UD-01 21 39754069 39754069 C T ERG 3'UTR 0.15 TCGA-VS-A9UD-01 21 43522369 43522369 C T UMODL1 Missense_Mutation p.S427F 0.30 deleterious(0) possibly_damaging(0.675) TCGA-VS-A9UD-01 21 45176106 45176106 G A PDXK 3'UTR 0.26 TCGA-VS-A9UD-01 22 19208968 19208968 C G CLTCL1 Missense_Mutation p.E910Q 0.33 deleterious(0) probably_damaging(0.926) TCGA-VS-A9UD-01 22 30690095 30690095 G A TBC1D10A Missense_Mutation p.A244V 0.42 deleterious(0) possibly_damaging(0.752) TCGA-VS-A9UD-01 22 31685565 31685565 G A PIK3IP1 Missense_Mutation p.A143V 0.19 tolerated(0.24) benign(0.025) TCGA-VS-A9UD-01 22 38075800 38075801 - C LGALS1 3'UTR 0.41 TCGA-VS-A9UD-01 22 39421559 39421559 C G APOBEC3D Intron 0.35 TCGA-VS-A9UD-01 22 39711489 39711489 G A RPL3 Silent p.A191A 0.23 TCGA-VS-A9UD-01 22 40806511 40806511 C T MKL1 3'UTR 0.65 TCGA-VS-A9UD-01 22 50876320 50876320 C T PPP6R2 Silent p.D584D 0.27 TCGA-VS-A9UD-01 22 51207053 51207053 C A RABL2B 3'UTR 0.64 TCGA-VS-A9UD-01 2 128016917 128016917 G A ERCC3 Silent p.A724A 0.51 TCGA-VS-A9UD-01 2 131976040 131976040 G T POTEE Missense_Mutation p.S22I 0.69 deleterious_low_confidence(0) benign(0.403) TCGA-VS-A9UD-01 2 132287505 132287505 G C CCDC74A Intron 0.21 TCGA-VS-A9UD-01 2 133543124 133543124 C T NCKAP5 Silent p.V420V 0.67 TCGA-VS-A9UD-01 2 201844975 201844975 G A FAM126B 3'UTR 0.60 TCGA-VS-A9UD-01 2 201845054 201845054 G - FAM126B 3'UTR 0.37 TCGA-VS-A9UD-01 2 201846515 201846515 G C FAM126B Silent p.L357L 0.49 TCGA-VS-A9UD-01 2 201857054 201857054 C T FAM126B Missense_Mutation p.D261N 0.12 deleterious(0) possibly_damaging(0.489) TCGA-VS-A9UD-01 2 202698663 202698663 T C CDK15 Silent p.S233S 0.15 TCGA-VS-A9UD-01 2 238742713 238742713 C T RBM44 Missense_Mutation p.P988L 0.10 deleterious(0) probably_damaging(0.943) TCGA-VS-A9UD-01 2 60688523 60688523 G A BCL11A Silent p.S508S 0.33 TCGA-VS-A9UD-01 2 96579917 96579917 G A ANKRD36C Silent p.D830D 0.52 TCGA-VS-A9UD-01 2 97215126 97215126 C T ARID5A Silent p.V63V 0.17 TCGA-VS-A9UD-01 3 122003583 122003583 G A CASR Missense_Mutation p.E938K 0.16 deleterious_low_confidence(0.04) benign(0.001) TCGA-VS-A9UD-01 3 122459076 122459084 TAAATACAT - HSPBAP1 3'UTR 0.33 TCGA-VS-A9UD-01 3 123010106 123010106 C T ADCY5 Missense_Mutation p.E1061K 0.47 tolerated(0.07) possibly_damaging(0.566) TCGA-VS-A9UD-01 3 12447544 12447544 G C PPARG Silent p.A261A 0.24 TCGA-VS-A9UD-01 3 126708047 126708047 G A PLXNA1 Missense_Mutation p.R204H 0.28 deleterious(0) probably_damaging(1) TCGA-VS-A9UD-01 3 129547335 129547335 G A TMCC1 5'UTR 0.47 TCGA-VS-A9UD-01 3 137822535 137822535 G A DZIP1L Silent p.I93I 0.26 TCGA-VS-A9UD-01 3 147106573 147106573 G C ZIC4 3'UTR 0.26 TCGA-VS-A9UD-01 3 151164730 151164730 C T IGSF10 Silent p.Q1013Q 0.25 TCGA-VS-A9UD-01 3 154898673 154898673 T C MME 3'UTR 0.21 TCGA-VS-A9UD-01 3 183014988 183014988 G A MCF2L2 Intron 0.26 TCGA-VS-A9UD-01 3 185347908 185347908 C G SENP2 3'UTR 0.34 TCGA-VS-A9UD-01 3 195456550 195456550 G C MUC20 Silent p.L667L 0.14 TCGA-VS-A9UD-01 3 195477950 195477950 G A MUC4 Silent p.I5227I 0.57 TCGA-VS-A9UD-01 3 31917962 31917962 C T OSBPL10 Missense_Mutation p.R167Q 0.48 tolerated(0.97) benign(0.017) TCGA-VS-A9UD-01 3 45637430 45637430 G A LIMD1 Silent p.S353S 0.71 TCGA-VS-A9UD-01 3 52668681 52668681 G C PBRM1 Nonsense_Mutation p.S413* 0.45 TCGA-VS-A9UD-01 3 64085178 64085178 G A PRICKLE2 Missense_Mutation p.S695F 0.62 deleterious(0) possibly_damaging(0.55) TCGA-VS-A9UD-01 3 64085182 64085182 G A PRICKLE2 Missense_Mutation p.R694C 0.58 tolerated(0.08) possibly_damaging(0.874) TCGA-VS-A9UD-01 3 64085238 64085238 G T PRICKLE2 Nonsense_Mutation p.S675* 0.62 TCGA-VS-A9UD-01 3 97731370 97731370 G A GABRR3 Intron 0.24 TCGA-VS-A9UD-01 4 125592369 125592369 C T ANKRD50 Missense_Mutation p.G688E 0.50 deleterious(0) probably_damaging(1) TCGA-VS-A9UD-01 4 128819663 128819663 G C PLK4 Missense_Mutation p.L960F 0.19 tolerated(0.1) possibly_damaging(0.714) TCGA-VS-A9UD-01 4 156296145 156296145 C T MAP9 Missense_Mutation p.R35H 0.36 tolerated(0.06) probably_damaging(1) TCGA-VS-A9UD-01 4 170398404 170398404 G A NEK1 Missense_Mutation p.H769Y 0.37 tolerated(0.88) benign(0.001) TCGA-VS-A9UD-01 4 3319308 3319308 C T RGS12 Missense_Mutation p.P471S 0.60 tolerated(0.42) benign(0.001) TCGA-VS-A9UD-01 4 38945174 38945174 C T FAM114A1 Missense_Mutation p.P563L 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VS-A9UD-01 4 46930528 46930528 C T GABRA4 Missense_Mutation p.R460Q 0.21 tolerated_low_confidence(0.6) benign(0.003) TCGA-VS-A9UD-01 4 762148 762148 G A PCGF3 3'UTR 0.44 TCGA-VS-A9UD-01 4 83278008 83278009 - A HNRNPD Frame_Shift_Ins p.Q265Lfs*8 0.10 TCGA-VS-A9UD-01 5 101795412 101795412 G A SLCO6A1 Silent p.V323V 0.33 TCGA-VS-A9UD-01 5 112770240 112770240 G A TSSK1B Silent p.L99L 0.24 TCGA-VS-A9UD-01 5 132085088 132085088 G A CCNI2 Missense_Mutation p.A203T 0.23 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UD-01 5 133483454 133483454 G A TCF7 3'UTR 0.50 TCGA-VS-A9UD-01 5 156747710 156747710 G A CYFIP2 Missense_Mutation p.R498Q 0.25 tolerated(0.34) benign(0.001) TCGA-VS-A9UD-01 5 54929536 54929536 C G SLC38A9 Intron 0.08 TCGA-VS-A9UD-01 6 116600678 116600678 C T TSPYL1 Missense_Mutation p.E106K 0.48 tolerated(0.42) possibly_damaging(0.821) TCGA-VS-A9UD-01 6 117715472 117715472 G A ROS1 Silent p.F339F 0.28 TCGA-VS-A9UD-01 6 121433713 121433713 G C TBC1D32 Missense_Mutation p.L1088V 0.39 tolerated(0.08) possibly_damaging(0.779) TCGA-VS-A9UD-01 6 15508628 15508628 G A JARID2 Missense_Mutation p.R930Q 0.39 deleterious(0.04) possibly_damaging(0.876) TCGA-VS-A9UD-01 6 159084262 159084262 G A SYTL3 5'UTR 0.19 TCGA-VS-A9UD-01 6 159654097 159654097 G A FNDC1 Silent p.S851S 0.06 TCGA-VS-A9UD-01 6 167591969 167591969 C T TCP10L2 Missense_Mutation p.P199L 0.15 tolerated(0.06) possibly_damaging(0.523) TCGA-VS-A9UD-01 6 27834879 27834879 C T HIST1H1B Silent p.K143K 0.27 TCGA-VS-A9UD-01 6 29141479 29141479 C T OR2J2 Nonsense_Mutation p.Q23* 0.37 TCGA-VS-A9UD-01 6 31324049 31324049 C A HLA-B Nonsense_Mutation p.E172* 0.29 TCGA-VS-A9UD-01 6 31711942 31711942 G A MSH5 Intron 0.36 TCGA-VS-A9UD-01 6 32805400 32805418 ACCAGAATAGTGAGGGATT - TAP2 Frame_Shift_Del p.L168Ffs*3 0.51 TCGA-VS-A9UD-01 6 38704999 38704999 G A DNAH8 Missense_Mutation p.E90K 0.39 benign(0.04) TCGA-VS-A9UD-01 6 39872039 39872039 C G DAAM2 3'UTR 0.36 TCGA-VS-A9UD-01 6 42619764 42619764 G A UBR2 Missense_Mutation p.E857K 0.39 deleterious(0) benign(0.391) TCGA-VS-A9UD-01 6 43023871 43023871 G A MRPL2 Silent p.N156N 0.33 TCGA-VS-A9UD-01 6 46766842 46766842 G A MEP1A Splice_Site p.X63_splice 0.42 TCGA-VS-A9UD-01 6 96654991 96654991 T A FUT9 3'UTR 0.17 TCGA-VS-A9UD-01 6 96654992 96654992 T C FUT9 3'UTR 0.17 TCGA-VS-A9UD-01 6 99848924 99848924 C T PNISR Missense_Mutation p.R637Q 0.10 deleterious_low_confidence(0.01) benign(0.417) TCGA-VS-A9UD-01 7 120768439 120768439 G A CPED1 Missense_Mutation p.E436K 0.44 tolerated(0.57) benign(0.077) TCGA-VS-A9UD-01 7 120935742 120935742 C T CPED1 3'UTR 0.24 TCGA-VS-A9UD-01 7 128431576 128431576 G C CCDC136 5'Flank 0.45 TCGA-VS-A9UD-01 7 144101721 144101721 G A NOBOX Silent p.Y46Y 0.24 TCGA-VS-A9UD-01 7 1487307 1487307 C T MICALL2 Silent p.S143S 0.43 TCGA-VS-A9UD-01 7 23741742 23741742 A G FAM221A Missense_Mutation p.K286E 0.30 deleterious_low_confidence(0.04) benign(0.018) TCGA-VS-A9UD-01 7 27211274 27211274 A T HOXA10 3'UTR 0.32 TCGA-VS-A9UD-01 7 2976754 2976754 C T CARD11 Missense_Mutation p.E420K 0.19 tolerated(0.24) probably_damaging(0.995) TCGA-VS-A9UD-01 7 2976761 2976761 C T CARD11 Missense_Mutation p.M417I 0.25 tolerated(0.05) benign(0.017) TCGA-VS-A9UD-01 7 2976764 2976764 C T CARD11 Silent p.E416E 0.27 TCGA-VS-A9UD-01 7 72419290 72419290 G A POM121 3'UTR 0.21 TCGA-VS-A9UD-01 7 75609939 75609939 G C POR Intron 0.32 TCGA-VS-A9UD-01 7 86493850 86493850 C G GRM3 3'UTR 0.35 TCGA-VS-A9UD-01 7 94913467 94913467 C T PPP1R9A Missense_Mutation p.A1145V 0.35 tolerated(0.1) benign(0.135) TCGA-VS-A9UD-01 7 98524859 98524859 G A TRRAP Silent p.R1015R 0.39 TCGA-VS-A9UD-01 7 99359837 99359837 C T CYP3A4 Silent p.V360V 0.38 TCGA-VS-A9UD-01 8 103289318 103289318 C G UBR5 Missense_Mutation p.E2131Q 0.60 tolerated(0.25) benign(0.395) TCGA-VS-A9UD-01 8 143623782 143623782 G A BAI1 Missense_Mutation p.R1396H 0.53 tolerated(0.68) possibly_damaging(0.522) TCGA-VS-A9UD-01 8 22273294 22273294 C A SLC39A14 Missense_Mutation p.H255N 0.58 deleterious(0.01) probably_damaging(0.934) TCGA-VS-A9UD-01 9 104086619 104086619 C T LPPR1 3'UTR 0.42 TCGA-VS-A9UD-01 9 108467964 108467964 C G TMEM38B Missense_Mutation p.L67V 0.15 tolerated(0.36) benign(0.009) TCGA-VS-A9UD-01 9 128729102 128729102 G C PBX3 3'UTR 0.56 TCGA-VS-A9UD-01 9 130486576 130486576 C T TTC16 Silent p.G350G 0.15 TCGA-VS-A9UD-01 9 139417344 139417344 G A NOTCH1 Missense_Mutation p.R234C 0.56 tolerated(0.05) possibly_damaging(0.846) TCGA-VS-A9UD-01 9 27547187 27547187 A G C9orf72 3'UTR 0.20 TCGA-VS-A9UD-01 9 32543189 32543189 G A TOPORS Missense_Mutation p.S445L 0.28 deleterious(0) possibly_damaging(0.898) TCGA-VS-A9UD-01 9 34997161 34997161 C T DNAJB5 Nonsense_Mutation p.R432* 0.41 TCGA-VS-A9UD-01 9 37537722 37537722 C T FBXO10 Nonsense_Mutation p.W268* 0.44 TCGA-VS-A9UD-01 9 77631279 77631279 A G C9orf41 Silent p.F165F 0.39 TCGA-VS-A9UD-01 X 101913429 101913429 C T GPRASP1 3'UTR 0.29 TCGA-VS-A9UD-01 X 108885313 108885313 T A ACSL4 3'UTR 0.11 TCGA-VS-A9UD-01 X 114245324 114245324 A G IL13RA2 Missense_Mutation p.C197R 0.08 deleterious(0) probably_damaging(1) TCGA-VS-A9UD-01 X 120008831 120008831 C T CT47B1 Missense_Mutation p.A232T 0.18 tolerated(0.38) unknown(0) TCGA-VS-A9UD-01 X 129758464 129758464 T C ENOX2 3'UTR 0.22 TCGA-VS-A9UD-01 X 134156135 134156135 A T FAM127C 3'UTR 0.21 TCGA-VS-A9UD-01 X 141291609 141291609 G A MAGEC2 Silent p.F55F 0.13 TCGA-VS-A9UD-01 X 149013607 149013607 C G MAGEA8 Silent p.L187L 0.10 TCGA-VS-A9UD-01 X 152823746 152823746 T C ATP2B3 Silent p.G870G 0.07 TCGA-VS-A9UD-01 X 153670090 153670090 G A GDI1 Missense_Mutation p.A314T 0.27 tolerated(0.05) benign(0.333) TCGA-VS-A9UD-01 X 23410877 23410877 C T PTCHD1 Silent p.Y414Y 0.12 TCGA-VS-A9UD-01 X 23722921 23722921 T G ACOT9 Missense_Mutation p.H383P 0.19 deleterious(0) probably_damaging(0.991) TCGA-VS-A9UD-01 X 23722934 23722934 G A ACOT9 Nonsense_Mutation p.Q379* 0.18 TCGA-VS-A9UD-01 X 39932400 39932400 C T BCOR Silent p.T733T 0.25 TCGA-VS-A9UD-01 X 41205858 41205858 G A DDX3X Missense_Mutation p.G533E 0.34 deleterious(0) probably_damaging(1) TCGA-VS-A9UD-01 X 47104832 47104832 T C USP11 Missense_Mutation p.C784R 0.06 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UD-01 X 48367878 48367878 G A PORCN 5'Flank 0.25 TCGA-VS-A9UD-01 X 51076218 51076218 C T NUDT10 Missense_Mutation p.P134L 0.11 deleterious(0.02) probably_damaging(1) TCGA-VS-A9UD-01 X 53585956 53585956 C T HUWE1 Missense_Mutation p.E2661K 0.13 benign(0.292) TCGA-VS-A9UD-01 X 79946568 79946568 C T BRWD3 Missense_Mutation p.E1196K 0.53 tolerated(0.07) possibly_damaging(0.549) TCGA-VS-A9UD-01 X 96220197 96220197 C T DIAPH2 Nonsense_Mutation p.Q681* 0.60 TCGA-VS-A9UD-01 X 99890177 99890177 C T TSPAN6 Missense_Mutation p.E117K 0.11 tolerated(0.3) benign(0.145) TCGA-VS-A9UH-01 10 120354232 120354232 G T PRLHR Silent p.L175L 0.25 TCGA-VS-A9UH-01 10 127436565 127436565 G A EDRF1 Missense_Mutation p.S1036N 0.19 tolerated(0.17) benign(0.034) TCGA-VS-A9UH-01 10 48389664 48389664 G A RBP3 Missense_Mutation p.A405V 0.23 tolerated(0.34) benign(0.127) TCGA-VS-A9UH-01 10 90699272 90699272 G C ACTA2 Missense_Mutation p.S267C 0.18 deleterious_low_confidence(0.03) benign(0.39) TCGA-VS-A9UH-01 10 93608209 93608209 C G TNKS2 Missense_Mutation p.Q810E 0.19 tolerated(0.63) benign(0.176) TCGA-VS-A9UH-01 11 113210169 113210169 G C TTC12 Missense_Mutation p.E267Q 0.12 tolerated(0.17) benign(0.186) TCGA-VS-A9UH-01 11 122720866 122720866 C G CRTAM Missense_Mutation p.S46C 0.26 deleterious(0.01) possibly_damaging(0.711) TCGA-VS-A9UH-01 11 129996600 129996600 C G APLP2 Missense_Mutation p.P366A 0.15 tolerated(0.1) benign(0.314) TCGA-VS-A9UH-01 11 130297605 130297605 C G ADAMTS8 Missense_Mutation p.E193Q 0.11 tolerated(0.53) benign(0.059) TCGA-VS-A9UH-01 11 133826710 133826710 G A IGSF9B 5'UTR 0.26 TCGA-VS-A9UH-01 11 1619377 1619377 C T KRTAP5-2 Missense_Mutation p.R35H 0.10 unknown(0) TCGA-VS-A9UH-01 11 30032859 30032859 T C KCNA4 Missense_Mutation p.K456R 0.10 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UH-01 11 4842663 4842663 C G OR51F2 Silent p.L16L 0.12 TCGA-VS-A9UH-01 11 4843285 4843285 G C OR51F2 Missense_Mutation p.D224H 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A9UH-01 11 57175235 57175235 C T SLC43A3 3'UTR 0.16 TCGA-VS-A9UH-01 11 57947828 57947828 C G OR9Q1 Silent p.L304L 0.17 TCGA-VS-A9UH-01 11 58602296 58602296 G C GLYATL2 Nonsense_Mutation p.S164* 0.20 TCGA-VS-A9UH-01 11 67432828 67432828 G A ALDH3B2 Missense_Mutation p.R212W 0.12 deleterious(0.01) probably_damaging(1) TCGA-VS-A9UH-01 11 70331427 70331427 G A SHANK2 Silent p.L1658L 0.21 TCGA-VS-A9UH-01 12 107713782 107713782 C G BTBD11 Silent p.V355V 0.14 TCGA-VS-A9UH-01 12 109096664 109096664 C T CORO1C Intron 0.10 TCGA-VS-A9UH-01 12 110600732 110600732 C G IFT81 Missense_Mutation p.I350M 0.12 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UH-01 12 113596509 113596509 G C CCDC42B 3'UTR 0.25 TCGA-VS-A9UH-01 12 119960747 119960747 G C CCDC60 Missense_Mutation p.E348D 0.14 tolerated(1) benign(0.008) TCGA-VS-A9UH-01 12 122756019 122756019 G - CLIP1 3'Flank 0.15 TCGA-VS-A9UH-01 12 122756356 122756356 G C CLIP1 3'Flank 0.22 TCGA-VS-A9UH-01 12 122756415 122756415 G C CLIP1 3'Flank 0.15 TCGA-VS-A9UH-01 12 125834167 125834167 C T TMEM132B Silent p.F74F 0.13 TCGA-VS-A9UH-01 12 129283831 129283831 C T SLC15A4 Missense_Mutation p.G516R 0.17 deleterious(0) probably_damaging(0.985) TCGA-VS-A9UH-01 12 131311773 131311773 C G STX2 Missense_Mutation p.E24Q 0.26 deleterious(0.04) benign(0.081) TCGA-VS-A9UH-01 12 25147195 25147195 C T C12orf77 3'UTR 0.35 TCGA-VS-A9UH-01 12 26277706 26277706 C T BHLHE41 Missense_Mutation p.E3K 0.27 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-VS-A9UH-01 12 283952 283952 T C IQSEC3 Missense_Mutation p.V1101A 0.16 deleterious(0) possibly_damaging(0.539) TCGA-VS-A9UH-01 12 29670357 29670357 C G TMTC1 Intron 0.31 TCGA-VS-A9UH-01 12 4554406 4554406 C T FGF6 Missense_Mutation p.E111K 0.22 tolerated(0.57) benign(0.006) TCGA-VS-A9UH-01 12 48890083 48890083 G C C12orf54 3'UTR 0.19 TCGA-VS-A9UH-01 12 49413439 49413439 A T KMT2D 3'UTR 0.11 TCGA-VS-A9UH-01 12 49442522 49442522 C A KMT2D Nonsense_Mutation p.E1351* 0.26 TCGA-VS-A9UH-01 12 50855021 50855021 C T LARP4 Missense_Mutation p.P409S 0.07 tolerated(0.4) benign(0.002) TCGA-VS-A9UH-01 12 52946745 52946745 G C KRT71 Silent p.L39L 0.15 TCGA-VS-A9UH-01 12 52946766 52946766 G A KRT71 Silent p.F32F 0.13 TCGA-VS-A9UH-01 12 52946776 52946776 G A KRT71 Missense_Mutation p.S29L 0.15 tolerated(0.48) probably_damaging(0.977) TCGA-VS-A9UH-01 12 56320921 56320921 G C WIBG Intron 0.24 TCGA-VS-A9UH-01 12 56661073 56661073 C G COQ10A Intron 0.40 TCGA-VS-A9UH-01 12 6347118 6347118 C T CD9 3'UTR 0.30 TCGA-VS-A9UH-01 12 64678492 64678492 C T C12orf56 Missense_Mutation p.R261K 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-VS-A9UH-01 12 93793214 93793214 T C NUDT4 3'UTR 0.11 TCGA-VS-A9UH-01 12 96921121 96921121 C T C12orf55 Missense_Mutation p.S419L 0.13 deleterious(0) probably_damaging(0.92) TCGA-VS-A9UH-01 13 103459879 103459879 C G BIVM-ERCC5 Missense_Mutation p.P60A 0.11 tolerated_low_confidence(1) benign(0) TCGA-VS-A9UH-01 13 21742230 21742230 C G SKA3 Missense_Mutation p.E214Q 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-VS-A9UH-01 13 25444837 25444837 G A RNF17 Silent p.K1469K 0.17 TCGA-VS-A9UH-01 13 26138120 26138120 C T ATP8A2 Missense_Mutation p.S475F 0.18 deleterious(0.05) benign(0.067) TCGA-VS-A9UH-01 13 28903834 28903834 C T FLT1 Silent p.L875L 0.17 TCGA-VS-A9UH-01 13 32823766 32823766 C G FRY Nonsense_Mutation p.S2371* 0.16 TCGA-VS-A9UH-01 13 32914496 32914496 G A BRCA2 Missense_Mutation p.E2002K 0.28 tolerated(0.62) benign(0.013) TCGA-VS-A9UH-01 13 32914835 32914835 G A BRCA2 Missense_Mutation p.E2115K 0.17 tolerated(0.35) benign(0.084) TCGA-VS-A9UH-01 13 48881438 48881438 G C RB1 Missense_Mutation p.E54Q 0.26 deleterious(0.04) benign(0.051) TCGA-VS-A9UH-01 13 49030468 49030468 C G RB1 Nonsense_Mutation p.S648* 0.19 TCGA-VS-A9UH-01 13 50126320 50126320 C G RCBTB1 Silent p.V235V 0.33 TCGA-VS-A9UH-01 13 51915180 51915180 C T SERPINE3 5'UTR 0.23 TCGA-VS-A9UH-01 13 70275035 70275035 C G KLHL1 3'UTR 0.16 TCGA-VS-A9UH-01 13 73396023 73396023 C T PIBF1 Nonsense_Mutation p.Q237* 0.13 TCGA-VS-A9UH-01 13 77641755 77641755 C T MYCBP2 Missense_Mutation p.G4101E 0.15 probably_damaging(0.998) TCGA-VS-A9UH-01 13 95363991 95363991 C T SOX21 Missense_Mutation p.D105N 0.19 tolerated(0.09) benign(0.086) TCGA-VS-A9UH-01 14 105685365 105685365 C G BRF1 Missense_Mutation p.E495D 0.28 tolerated(0.1) possibly_damaging(0.512) TCGA-VS-A9UH-01 14 19969244 19969244 T C CTD-2311B13.7 RNA 0.08 TCGA-VS-A9UH-01 14 21501931 21501931 G C RP11-998D10.1 Missense_Mutation p.W89C 0.28 unknown(0) TCGA-VS-A9UH-01 14 22994622 22994622 G C TRAJ18 Missense_Mutation p.D2H 0.24 unknown(0) TCGA-VS-A9UH-01 14 22999295 22999295 C G TRAJ14 Missense_Mutation p.I6M 0.12 unknown(0) TCGA-VS-A9UH-01 14 24035402 24035402 G C AP1G2 Intron 0.18 TCGA-VS-A9UH-01 14 24537817 24537817 G T LRRC16B Missense_Mutation p.S1236I 0.24 deleterious(0) unknown(0) TCGA-VS-A9UH-01 14 32902663 32902663 C T AKAP6 Intron 0.29 TCGA-VS-A9UH-01 14 50626418 50626418 G A SOS2 Missense_Mutation p.S528F 0.10 deleterious(0) probably_damaging(0.931) TCGA-VS-A9UH-01 14 59814306 59814306 G A DAAM1 Missense_Mutation p.E719K 0.27 tolerated(0.07) possibly_damaging(0.818) TCGA-VS-A9UH-01 14 60448697 60448697 C T LRRC9 Silent p.I670I 0.27 TCGA-VS-A9UH-01 14 63416773 63416773 G A KCNH5 Intron 0.06 TCGA-VS-A9UH-01 14 64941147 64941147 C G AKAP5 3'UTR 0.19 TCGA-VS-A9UH-01 14 75937093 75937093 C G JDP2 3'UTR 0.18 TCGA-VS-A9UH-01 15 41373222 41373222 C T INO80 Missense_Mutation p.R308Q 0.13 deleterious(0.01) benign(0.18) TCGA-VS-A9UH-01 15 43446928 43446928 C T TMEM62 Missense_Mutation p.H361Y 0.17 tolerated(1) benign(0.001) TCGA-VS-A9UH-01 15 43585804 43585804 G C TGM7 Silent p.V12V 0.08 TCGA-VS-A9UH-01 15 49882150 49882150 G A FAM227B Silent p.L54L 0.10 TCGA-VS-A9UH-01 15 63341007 63341007 C T TPM1 Intron 0.16 TCGA-VS-A9UH-01 15 65793011 65793011 C T DPP8 Missense_Mutation p.G176E 0.08 deleterious(0) probably_damaging(1) TCGA-VS-A9UH-01 15 74317242 74317242 C T PML Missense_Mutation p.P410S 0.16 deleterious(0.01) benign(0.279) TCGA-VS-A9UH-01 16 10576122 10576122 G C ATF7IP2 3'UTR 0.16 TCGA-VS-A9UH-01 16 21181835 21181835 C T TMEM159 Silent p.F58F 0.11 TCGA-VS-A9UH-01 16 21847754 21847754 T G NPIPB4 Missense_Mutation p.I652L 0.26 benign(0.008) TCGA-VS-A9UH-01 16 30006744 30006744 G C HIRIP3 Missense_Mutation p.H36D 0.20 deleterious(0) possibly_damaging(0.541) TCGA-VS-A9UH-01 16 331834 331834 G A ARHGDIG Silent p.K54K 0.28 TCGA-VS-A9UH-01 16 51172695 51172695 C G SALL1 Silent p.S1146S 0.21 TCGA-VS-A9UH-01 16 58149241 58149241 G A C16orf80 Nonsense_Mutation p.Q133* 0.33 TCGA-VS-A9UH-01 16 67196802 67196802 C G FBXL8 Silent p.L68L 0.20 TCGA-VS-A9UH-01 16 67271440 67271440 G A FHOD1 Silent p.L263L 0.12 TCGA-VS-A9UH-01 16 67719507 67719507 C G GFOD2 Missense_Mutation p.E38Q 0.20 tolerated(0.59) benign(0.026) TCGA-VS-A9UH-01 16 70287823 70287823 C G AARS Missense_Mutation p.R840P 0.21 tolerated(0.12) possibly_damaging(0.897) TCGA-VS-A9UH-01 16 82660665 82660665 G A CDH13 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) benign(0.043) TCGA-VS-A9UH-01 16 90110347 90110347 G C GAS8 3'UTR 0.24 TCGA-VS-A9UH-01 17 1559978 1559978 G A PRPF8 Silent p.I1861I 0.15 TCGA-VS-A9UH-01 17 16608523 16608523 G A CCDC144A Silent p.L158L 0.19 TCGA-VS-A9UH-01 17 16725369 16725369 G C AC022596.6 RNA 0.09 TCGA-VS-A9UH-01 17 18059560 18059560 C T MYO15A Silent p.F2837F 0.24 TCGA-VS-A9UH-01 17 30806334 30806334 G T PSMD11 Missense_Mutation p.L326F 0.21 deleterious(0.03) probably_damaging(0.97) TCGA-VS-A9UH-01 17 33738847 33738847 G C SLFN12 Missense_Mutation p.S416C 0.12 tolerated(0.09) possibly_damaging(0.818) TCGA-VS-A9UH-01 17 34432828 34432828 C G CCL4 3'UTR 0.33 TCGA-VS-A9UH-01 17 35343991 35343991 C T AATF Missense_Mutation p.T303I 0.11 deleterious(0.05) possibly_damaging(0.579) TCGA-VS-A9UH-01 17 35932015 35932015 G C SYNRG Missense_Mutation p.L325V 0.12 deleterious(0) probably_damaging(0.99) TCGA-VS-A9UH-01 17 40695717 40695717 C T NAGLU Missense_Mutation p.R565W 0.42 deleterious(0) probably_damaging(1) TCGA-VS-A9UH-01 17 40714449 40714449 G C COASY Missense_Mutation p.R7T 0.17 tolerated_low_confidence(0.08) benign(0) TCGA-VS-A9UH-01 17 40823524 40823524 G A PLEKHH3 Missense_Mutation p.R377W 0.15 tolerated(0.19) unknown(0) TCGA-VS-A9UH-01 17 42483304 42483304 C G GPATCH8 Missense_Mutation p.R203T 0.22 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UH-01 17 42483354 42483354 C G GPATCH8 Missense_Mutation p.E186D 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-VS-A9UH-01 17 46621933 46621933 G A HOXB2 Missense_Mutation p.P114L 0.13 tolerated(0.1) benign(0.169) TCGA-VS-A9UH-01 17 48768602 48768602 C T ABCC3 3'UTR 0.22 TCGA-VS-A9UH-01 17 4883696 4883696 G C CAMTA2 Missense_Mutation p.I330M 0.24 tolerated_low_confidence(0.17) possibly_damaging(0.655) TCGA-VS-A9UH-01 17 53399292 53399292 C G HLF 3'UTR 0.19 TCGA-VS-A9UH-01 17 5993723 5993723 G C WSCD1 Missense_Mutation p.E209Q 0.22 deleterious(0.01) possibly_damaging(0.678) TCGA-VS-A9UH-01 17 61476218 61476218 G A TANC2 Missense_Mutation p.E1018K 0.22 deleterious(0.04) benign(0.173) TCGA-VS-A9UH-01 17 67256495 67256495 G A ABCA5 Missense_Mutation p.S1208L 0.14 tolerated(1) benign(0) TCGA-VS-A9UH-01 17 72346919 72346919 G A AC103809.2 Missense_Mutation p.S131L 0.19 unknown(0) TCGA-VS-A9UH-01 17 7363506 7363506 G C ZBTB4 3'UTR 0.11 TCGA-VS-A9UH-01 17 7363600 7363600 G A ZBTB4 3'UTR 0.07 TCGA-VS-A9UH-01 17 7678583 7678583 G A DNAH2 Missense_Mutation p.E1582K 0.23 benign(0.192) TCGA-VS-A9UH-01 17 78345681 78345681 G A RNF213 Missense_Mutation p.D4145N 0.25 possibly_damaging(0.529) TCGA-VS-A9UH-01 17 78360638 78360638 C G RNF213 Missense_Mutation p.Q4957E 0.30 benign(0.036) TCGA-VS-A9UH-01 18 21495250 21495250 C T LAMA3 Intron 0.24 TCGA-VS-A9UH-01 18 30254401 30254401 G C KLHL14 3'UTR 0.20 TCGA-VS-A9UH-01 18 40853648 40853648 G C SYT4 Nonsense_Mutation p.S249* 0.08 TCGA-VS-A9UH-01 18 44559850 44559850 C T TCEB3B Missense_Mutation p.E596K 0.11 deleterious(0) benign(0.038) TCGA-VS-A9UH-01 18 61322780 61322780 G C SERPINB3 3'UTR 0.25 TCGA-VS-A9UH-01 18 72234573 72234573 G A CNDP1 Missense_Mutation p.V221M 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A9UH-01 18 724016 724016 A G YES1 3'UTR 0.07 TCGA-VS-A9UH-01 19 15296464 15296464 C G NOTCH3 Missense_Mutation p.E660Q 0.12 deleterious(0.01) probably_damaging(0.964) TCGA-VS-A9UH-01 19 17330079 17330079 C T USE1 Silent p.L160L 0.27 TCGA-VS-A9UH-01 19 1808245 1808245 G C ATP8B3 Missense_Mutation p.F164L 0.29 deleterious(0) benign(0.071) TCGA-VS-A9UH-01 19 18572397 18572397 G A ELL Silent p.L245L 0.17 TCGA-VS-A9UH-01 19 19680320 19680320 G T PBX4 Missense_Mutation p.P236T 0.23 deleterious(0.02) probably_damaging(1) TCGA-VS-A9UH-01 19 3534446 3534446 G A FZR1 Missense_Mutation p.V459I 0.06 deleterious(0.02) probably_damaging(1) TCGA-VS-A9UH-01 19 36259430 36259430 G C C19orf55 3'UTR 0.18 TCGA-VS-A9UH-01 19 39292461 39292461 C A LGALS4 Missense_Mutation p.Q305H 0.06 tolerated(0.25) benign(0.018) TCGA-VS-A9UH-01 19 41813214 41813214 C T HNRNPUL1 3'UTR 0.20 TCGA-VS-A9UH-01 19 42474558 42474558 G C ATP1A3 Missense_Mutation p.I813M 0.20 deleterious(0.01) possibly_damaging(0.711) TCGA-VS-A9UH-01 19 4409544 4409544 C T CHAF1A Missense_Mutation p.P250S 0.16 tolerated_low_confidence(0.71) unknown(0) TCGA-VS-A9UH-01 19 50529292 50529292 G A ZNF473 5'UTR 0.30 TCGA-VS-A9UH-01 19 56572841 56572841 G C NLRP5 Missense_Mutation p.D1184H 0.24 deleterious(0.03) probably_damaging(0.947) TCGA-VS-A9UH-01 19 57792132 57792132 G C ZNF460 5'UTR 0.27 TCGA-VS-A9UH-01 19 57868072 57868072 C T ZNF304 Missense_Mutation p.H279Y 0.38 tolerated(1) benign(0.044) TCGA-VS-A9UH-01 19 58549552 58549552 C T ZSCAN1 Silent p.L116L 0.16 TCGA-VS-A9UH-01 19 7691118 7691118 G C XAB2 Silent p.L187L 0.21 TCGA-VS-A9UH-01 19 7692677 7692677 C T XAB2 Silent p.V87V 0.50 TCGA-VS-A9UH-01 1 115576917 115576917 C T TSHB 3'UTR 0.12 TCGA-VS-A9UH-01 1 119964570 119964570 C G HSD3B2 Missense_Mutation p.T149R 0.08 tolerated(0.13) benign(0.021) TCGA-VS-A9UH-01 1 152286758 152286758 C T FLG Missense_Mutation p.E202K 0.19 benign(0.432) TCGA-VS-A9UH-01 1 155533076 155533076 G A ASH1L 5'Flank 0.42 TCGA-VS-A9UH-01 1 155936670 155936670 C G ARHGEF2 Missense_Mutation p.V73L 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-VS-A9UH-01 1 161495664 161495664 G C HSPA6 Missense_Mutation p.E406Q 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VS-A9UH-01 1 173754558 173754558 C G KLHL20 3'UTR 0.35 TCGA-VS-A9UH-01 1 179623411 179623411 G C TDRD5 Missense_Mutation p.E746Q 0.33 tolerated_low_confidence(0.31) benign(0.002) TCGA-VS-A9UH-01 1 207850733 207850733 G A CR1L Splice_Site p.X33_splice 0.06 TCGA-VS-A9UH-01 1 21180117 21180117 G C EIF4G3 Missense_Mutation p.P1113A 0.10 tolerated(0.34) benign(0.003) TCGA-VS-A9UH-01 1 212459484 212459484 C T PPP2R5A Missense_Mutation p.A11V 0.26 tolerated(0.13) unknown(0) TCGA-VS-A9UH-01 1 215901610 215901610 C T USH2A Missense_Mutation p.R3943K 0.11 benign(0.19) TCGA-VS-A9UH-01 1 225328522 225328522 C G DNAH14 Nonsense_Mutation p.S514* 0.27 TCGA-VS-A9UH-01 1 26795546 26795546 G T DHDDS Missense_Mutation p.R310L 0.46 deleterious(0) probably_damaging(1) TCGA-VS-A9UH-01 1 31811835 31811835 C G ZCCHC17 Missense_Mutation p.S86C 0.06 deleterious(0) possibly_damaging(0.84) TCGA-VS-A9UH-01 1 33790124 33790124 C G PHC2 3'UTR 0.12 TCGA-VS-A9UH-01 1 36752685 36752685 C G THRAP3 Nonsense_Mutation p.S285* 0.43 TCGA-VS-A9UH-01 1 52530586 52530586 G C BTF3L4 Silent p.V48V 0.04 TCGA-VS-A9UH-01 1 64015266 64015266 G C DLEU2L 3'UTR 0.06 TCGA-VS-A9UH-01 1 67885787 67885787 G A SERBP1 Missense_Mutation p.R301W 0.05 tolerated(0.06) benign(0.302) TCGA-VS-A9UH-01 20 16362359 16362359 A T KIF16B Silent p.L606L 0.16 TCGA-VS-A9UH-01 20 20586024 20586024 G C RALGAPA2 Silent p.L611L 0.17 TCGA-VS-A9UH-01 20 23335352 23335352 G C NXT1 3'UTR 0.18 TCGA-VS-A9UH-01 20 2539364 2539364 G T TMC2 Missense_Mutation p.K115N 0.20 tolerated(0.15) benign(0.002) TCGA-VS-A9UH-01 20 30790013 30790013 G A PLAGL2 5'UTR 0.36 TCGA-VS-A9UH-01 20 30897799 30897799 C T KIF3B Silent p.Y73Y 0.09 TCGA-VS-A9UH-01 20 34291657 34291657 C G RBM39 3'UTR 0.32 TCGA-VS-A9UH-01 20 36032462 36032462 G A SRC 3'UTR 0.24 TCGA-VS-A9UH-01 20 36625213 36625213 G A TTI1 Missense_Mutation p.A979V 0.08 deleterious(0.01) possibly_damaging(0.891) TCGA-VS-A9UH-01 20 43138583 43138583 C T SERINC3 Missense_Mutation p.E188K 0.20 deleterious(0.04) probably_damaging(0.986) TCGA-VS-A9UH-01 20 5538703 5538703 G C GPCPD1 Missense_Mutation p.Q573E 0.20 tolerated(0.9) benign(0.001) TCGA-VS-A9UH-01 20 58489175 58489175 C G SYCP2 Missense_Mutation p.E256Q 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-VS-A9UH-01 20 58512287 58512287 C T PPP1R3D 3'UTR 0.24 TCGA-VS-A9UH-01 20 62290646 62290646 C T RTEL1 5'UTR 0.30 TCGA-VS-A9UH-01 21 47548841 47548841 G A COL6A2 Intron 0.12 TCGA-VS-A9UH-01 22 35661324 35661324 G C HMGXB4 Missense_Mutation p.E315Q 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-VS-A9UH-01 22 38504265 38504265 G C BAIAP2L2 Missense_Mutation p.L71V 0.12 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UH-01 22 38881532 38881532 T C DDX17 3'UTR 0.21 TCGA-VS-A9UH-01 22 39388533 39388533 G C APOBEC3B 3'UTR 0.09 TCGA-VS-A9UH-01 22 50715090 50715090 C T PLXNB2 Missense_Mutation p.D1769N 0.18 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UH-01 2 110881529 110881529 C T NPHP1 Missense_Mutation p.E681K 0.12 deleterious(0) possibly_damaging(0.839) TCGA-VS-A9UH-01 2 133403777 133403777 G C LYPD1 Silent p.S89S 0.18 TCGA-VS-A9UH-01 2 135119848 135119848 C T MGAT5 Missense_Mutation p.H417Y 0.15 deleterious(0) probably_damaging(0.994) TCGA-VS-A9UH-01 2 135714369 135714369 G A CCNT2 3'UTR 0.32 TCGA-VS-A9UH-01 2 14775180 14775180 G A FAM84A 3'UTR 0.17 TCGA-VS-A9UH-01 2 170053517 170053517 C G LRP2 Missense_Mutation p.E2868Q 0.28 possibly_damaging(0.899) TCGA-VS-A9UH-01 2 191064982 191064982 G A C2orf88 3'UTR 0.09 TCGA-VS-A9UH-01 2 197118746 197118746 C G HECW2 Missense_Mutation p.E1143Q 0.18 deleterious(0) probably_damaging(0.96) TCGA-VS-A9UH-01 2 198649781 198649781 G A BOLL Intron 0.17 TCGA-VS-A9UH-01 2 203420378 203420378 G A BMPR2 Missense_Mutation p.E664K 0.13 tolerated(0.07) possibly_damaging(0.695) TCGA-VS-A9UH-01 2 217543637 217543637 C T IGFBP5 Missense_Mutation p.G168E 0.09 tolerated(0.52) benign(0.347) TCGA-VS-A9UH-01 2 227729545 227729545 C T RHBDD1 Nonsense_Mutation p.Q46* 0.14 TCGA-VS-A9UH-01 2 233394665 233394665 G A CHRND Silent p.E212E 0.26 TCGA-VS-A9UH-01 2 234545585 234545585 G A UGT1A10 Silent p.E139E 0.14 TCGA-VS-A9UH-01 2 234590816 234590816 C G UGT1A7 Nonsense_Mutation p.S78* 0.20 TCGA-VS-A9UH-01 2 237406095 237406095 G A IQCA1 Missense_Mutation p.A16V 0.15 tolerated(0.18) benign(0.15) TCGA-VS-A9UH-01 2 242195673 242195673 C G HDLBP Missense_Mutation p.E267Q 0.16 tolerated(0.11) possibly_damaging(0.887) TCGA-VS-A9UH-01 2 44173295 44173295 G A LRPPRC Nonsense_Mutation p.R723* 0.20 TCGA-VS-A9UH-01 2 55874549 55874549 C G PNPT1 Missense_Mutation p.G512A 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A9UH-01 2 84821138 84821138 G A DNAH6 Missense_Mutation p.E885K 0.14 deleterious(0.01) possibly_damaging(0.516) TCGA-VS-A9UH-01 3 101401656 101401656 C G RPL24 Missense_Mutation p.Q96H 0.05 deleterious(0) probably_damaging(0.928) TCGA-VS-A9UH-01 3 10353646 10353646 C T SEC13 Intron 0.15 TCGA-VS-A9UH-01 3 10353723 10353723 C G SEC13 Missense_Mutation p.D126H 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A9UH-01 3 10353781 10353781 C T SEC13 Silent p.V106V 0.17 TCGA-VS-A9UH-01 3 118645047 118645047 C G IGSF11 Missense_Mutation p.V161L 0.07 tolerated(0.07) benign(0.277) TCGA-VS-A9UH-01 3 122579018 122579018 G A DIRC2 Silent p.L369L 0.07 TCGA-VS-A9UH-01 3 122628420 122628420 G A SEMA5B 3'Flank 0.12 TCGA-VS-A9UH-01 3 125727724 125727724 C G SLC41A3 Splice_Site p.X369_splice 0.14 TCGA-VS-A9UH-01 3 130712932 130712932 C G ATP2C1 Missense_Mutation p.Q717E 0.11 deleterious(0.01) benign(0.012) TCGA-VS-A9UH-01 3 148872966 148872966 G A HPS3 Silent p.V491V 0.17 TCGA-VS-A9UH-01 3 149479290 149479290 G C ANKUB1 Missense_Mutation p.S539C 0.09 tolerated_low_confidence(0.17) benign(0.078) TCGA-VS-A9UH-01 3 15297043 15297043 C G SH3BP5 3'UTR 0.13 TCGA-VS-A9UH-01 3 170802001 170802001 C G TNIK Missense_Mutation p.E1038Q 0.11 deleterious(0) probably_damaging(0.989) TCGA-VS-A9UH-01 3 197762805 197762805 C G LMLN Silent p.G623G 0.10 TCGA-VS-A9UH-01 3 37094505 37094505 C T LRRFIP2 3'UTR 0.25 TCGA-VS-A9UH-01 3 37323546 37323546 C T GOLGA4 Missense_Mutation p.S109F 0.14 probably_damaging(0.996) TCGA-VS-A9UH-01 3 46574328 46574328 C G LRRC2 Missense_Mutation p.D188H 0.11 tolerated(0.05) possibly_damaging(0.855) TCGA-VS-A9UH-01 3 48200521 48200521 C A CDC25A Missense_Mutation p.D497Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UH-01 3 5255054 5255054 C T EDEM1 Silent p.F577F 0.09 TCGA-VS-A9UH-01 4 108574782 108574782 T C PAPSS1 Missense_Mutation p.M368V 0.10 tolerated(0.12) benign(0.008) TCGA-VS-A9UH-01 4 114277959 114277959 G A ANK2 Missense_Mutation p.E2729K 0.12 benign(0.272) TCGA-VS-A9UH-01 4 128577810 128577810 G A INTU Silent p.V234V 0.12 TCGA-VS-A9UH-01 4 151186797 151186797 C G LRBA 3'UTR 0.10 TCGA-VS-A9UH-01 4 154260080 154260080 C T TRIM2 3'UTR 0.22 TCGA-VS-A9UH-01 4 155219207 155219207 C G DCHS2 Missense_Mutation p.D1632H 0.16 deleterious(0) possibly_damaging(0.875) TCGA-VS-A9UH-01 4 164246821 164246821 G A NPY1R Silent p.I263I 0.19 TCGA-VS-A9UH-01 4 187131756 187131756 C G CYP4V2 Missense_Mutation p.I513M 0.17 deleterious(0.03) possibly_damaging(0.872) TCGA-VS-A9UH-01 4 20715070 20715070 G A PACRGL Missense_Mutation p.E173K 0.12 tolerated(0.17) benign(0.043) TCGA-VS-A9UH-01 4 3475186 3475186 C T DOK7 Missense_Mutation p.R52W 0.17 deleterious(0) possibly_damaging(0.485) TCGA-VS-A9UH-01 4 3514670 3514670 C G LRPAP1 3'UTR 0.28 TCGA-VS-A9UH-01 4 48096154 48096154 C G TXK Missense_Mutation p.E217Q 0.19 deleterious(0.01) probably_damaging(1) TCGA-VS-A9UH-01 4 75254418 75254418 G A EREG 3'UTR 0.24 TCGA-VS-A9UH-01 5 109153137 109153137 G A MAN2A1 Missense_Mutation p.E703K 0.19 tolerated(0.09) benign(0.032) TCGA-VS-A9UH-01 5 137727844 137727844 G C KDM3B Silent p.L841L 0.26 TCGA-VS-A9UH-01 5 137727881 137727881 G A KDM3B Missense_Mutation p.E854K 0.20 tolerated(0.31) benign(0.157) TCGA-VS-A9UH-01 5 138665244 138665244 G C MATR3 3'UTR 0.20 TCGA-VS-A9UH-01 5 140023445 140023445 C T TMCO6 Silent p.L333L 0.16 TCGA-VS-A9UH-01 5 140183011 140183011 C T PCDHA3 Silent p.S743S 0.10 TCGA-VS-A9UH-01 5 141059904 141059904 G A ARAP3 Silent p.S50S 0.13 TCGA-VS-A9UH-01 5 147653932 147653932 C A SPINK13 Missense_Mutation p.F31L 0.18 tolerated(0.65) benign(0) TCGA-VS-A9UH-01 5 154307086 154307086 G C GEMIN5 Silent p.L313L 0.19 TCGA-VS-A9UH-01 5 173491248 173491248 C A NSG2 Missense_Mutation p.T48K 0.13 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UH-01 5 175798933 175798933 G A ARL10 3'UTR 0.29 TCGA-VS-A9UH-01 5 180622588 180622588 C G TRIM7 Missense_Mutation p.D372H 0.12 tolerated(0.09) probably_damaging(0.997) TCGA-VS-A9UH-01 5 67591077 67591077 G C PIK3R1 Missense_Mutation p.R557P 0.25 deleterious(0) probably_damaging(0.994) TCGA-VS-A9UH-01 5 72199584 72199584 G C TNPO1 Missense_Mutation p.D855H 0.13 tolerated(0.09) possibly_damaging(0.64) TCGA-VS-A9UH-01 5 95734696 95734696 C T PCSK1 Missense_Mutation p.R492K 0.13 tolerated(1) benign(0) TCGA-VS-A9UH-01 6 109005492 109005492 A C FOXO3 3'UTR 0.15 TCGA-VS-A9UH-01 6 119215505 119215505 C G ASF1A 5'UTR 0.29 TCGA-VS-A9UH-01 6 119500494 119500494 A C MAN1A1 3'UTR 0.23 TCGA-VS-A9UH-01 6 133427307 133427307 C G LINC00326 RNA 0.14 TCGA-VS-A9UH-01 6 137193351 137193351 G A PEX7 Missense_Mutation p.A255T 0.14 tolerated(0.46) benign(0.155) TCGA-VS-A9UH-01 6 139251116 139251116 C T REPS1 Missense_Mutation p.E419K 0.22 tolerated(0.14) benign(0.253) TCGA-VS-A9UH-01 6 152523006 152523006 G C SYNE1 Missense_Mutation p.L7700V 0.19 benign(0.1) TCGA-VS-A9UH-01 6 152552531 152552531 C T SYNE1 Missense_Mutation p.E7012K 0.28 benign(0.375) TCGA-VS-A9UH-01 6 159420552 159420552 G A RSPH3 Missense_Mutation p.R153W 0.23 deleterious(0.02) possibly_damaging(0.776) TCGA-VS-A9UH-01 6 160668288 160668288 C G SLC22A2 Missense_Mutation p.K295N 0.20 tolerated(0.06) possibly_damaging(0.868) TCGA-VS-A9UH-01 6 32160881 32160881 C G GPSM3 5'Flank 0.10 TCGA-VS-A9UH-01 6 33273051 33273051 G C TAPBP Missense_Mutation p.L195V 0.20 tolerated(0.14) benign(0.046) TCGA-VS-A9UH-01 6 7301561 7301561 C G SSR1 Silent p.L175L 0.13 TCGA-VS-A9UH-01 6 76631247 76631247 C T IMPG1 3'UTR 0.12 TCGA-VS-A9UH-01 6 88125418 88125418 G T C6ORF165 Nonsense_Mutation p.E100* 0.20 TCGA-VS-A9UH-01 6 90641628 90641628 G A BACH2 3'UTR 0.17 TCGA-VS-A9UH-01 6 99912601 99912601 C T USP45 Missense_Mutation p.G396E 0.15 tolerated(0.11) probably_damaging(0.955) TCGA-VS-A9UH-01 7 100681073 100681073 C G MUC17 Missense_Mutation p.P2126A 0.10 unknown(0) TCGA-VS-A9UH-01 7 103183219 103183219 C T RELN Silent p.L2210L 0.11 TCGA-VS-A9UH-01 7 107302129 107302129 G A SLC26A4 Missense_Mutation p.E15K 0.15 tolerated(0.33) benign(0.229) TCGA-VS-A9UH-01 7 123101563 123101563 A T IQUB Missense_Mutation p.S619T 0.22 tolerated(0.08) benign(0.031) TCGA-VS-A9UH-01 7 124386537 124386537 G A GPR37 3'UTR 0.10 TCGA-VS-A9UH-01 7 128517555 128517555 C T KCP RNA 0.25 TCGA-VS-A9UH-01 7 131186185 131186185 C G PODXL 3'Flank 0.19 TCGA-VS-A9UH-01 7 144098492 144098492 G T NOBOX Missense_Mutation p.S164Y 0.16 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-VS-A9UH-01 7 151919748 151919748 G A KMT2C Nonsense_Mutation p.Q1115* 0.13 TCGA-VS-A9UH-01 7 23286438 23286438 G C GPNMB 5'UTR 0.21 TCGA-VS-A9UH-01 7 24745972 24745972 G C DFNA5 Silent p.L338L 0.27 TCGA-VS-A9UH-01 7 26224923 26224923 G C NFE2L3 Missense_Mutation p.L535F 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-VS-A9UH-01 7 4796647 4796647 C G FOXK1 Missense_Mutation p.S358C 0.12 deleterious(0) probably_damaging(0.993) TCGA-VS-A9UH-01 7 48412032 48412032 C G ABCA13 Missense_Mutation p.L3691V 0.09 probably_damaging(1) TCGA-VS-A9UH-01 7 540762 540762 C G PDGFA Missense_Mutation p.E191Q 0.17 tolerated(0.21) benign(0.064) TCGA-VS-A9UH-01 7 5569005 5569007 CTT - ACTB In_Frame_Del p.K50del 0.18 TCGA-VS-A9UH-01 7 6098621 6098621 C T EIF2AK1 Missense_Mutation p.E32K 0.23 deleterious(0.01) possibly_damaging(0.509) TCGA-VS-A9UH-01 7 70257430 70257430 C T AUTS2 3'UTR 0.19 TCGA-VS-A9UH-01 7 72850022 72850022 G A FZD9 Missense_Mutation p.G562E 0.23 tolerated(0.28) possibly_damaging(0.77) TCGA-VS-A9UH-01 7 72850418 72850418 G A FZD9 3'UTR 0.27 TCGA-VS-A9UH-01 7 72891336 72891336 C G BAZ1B Missense_Mutation p.D819H 0.23 deleterious(0.03) benign(0.176) TCGA-VS-A9UH-01 7 72892173 72892173 C G BAZ1B Missense_Mutation p.E540Q 0.23 tolerated(0.12) possibly_damaging(0.77) TCGA-VS-A9UH-01 7 72892245 72892245 C T BAZ1B Missense_Mutation p.E516K 0.27 deleterious(0.04) possibly_damaging(0.601) TCGA-VS-A9UH-01 7 75053833 75053833 T C POM121C Missense_Mutation p.N283D 0.09 deleterious(0.03) probably_damaging(0.973) TCGA-VS-A9UH-01 7 87757967 87757967 G C ADAM22 Silent p.L243L 0.23 TCGA-VS-A9UH-01 7 97820960 97820960 G C LMTK2 Missense_Mutation p.E395Q 0.22 deleterious(0) possibly_damaging(0.742) TCGA-VS-A9UH-01 8 100829964 100829964 G C VPS13B Missense_Mutation p.G2790A 0.10 deleterious(0) possibly_damaging(0.794) TCGA-VS-A9UH-01 8 10753936 10753936 C G XKR6 3'Flank 0.20 TCGA-VS-A9UH-01 8 113420591 113420591 G A CSMD3 Missense_Mutation p.S1854L 0.20 deleterious(0) benign(0.324) TCGA-VS-A9UH-01 8 124383989 124383989 C G ATAD2 Missense_Mutation p.E153Q 0.16 deleterious(0.01) benign(0.393) TCGA-VS-A9UH-01 8 126096049 126096049 C G KIAA0196 Missense_Mutation p.R31T 0.15 deleterious(0) possibly_damaging(0.825) TCGA-VS-A9UH-01 8 131136286 131136286 G A ASAP1 Missense_Mutation p.S527L 0.11 tolerated(0.05) probably_damaging(0.966) TCGA-VS-A9UH-01 8 144940860 144940860 T G EPPK1 Missense_Mutation p.S2188R 0.10 benign(0.001) TCGA-VS-A9UH-01 8 22210523 22210523 G C PIWIL2 Missense_Mutation p.D819H 0.18 deleterious(0) probably_damaging(0.986) TCGA-VS-A9UH-01 8 23537072 23537072 C G NKX3-1 3'UTR 0.16 TCGA-VS-A9UH-01 8 28331315 28331315 C T FBXO16 Missense_Mutation p.E37K 0.14 deleterious(0) possibly_damaging(0.858) TCGA-VS-A9UH-01 8 42710830 42710830 G C RNF170 3'UTR 0.29 TCGA-VS-A9UH-01 8 67062582 67062582 C T TRIM55 Missense_Mutation p.S289L 0.10 tolerated(0.13) benign(0.012) TCGA-VS-A9UH-01 8 72754971 72754971 G C MSC Missense_Mutation p.F182L 0.21 deleterious(0.01) possibly_damaging(0.596) TCGA-VS-A9UH-01 8 74894598 74894598 G A TMEM70 3'UTR 0.22 TCGA-VS-A9UH-01 8 75278650 75278650 C T GDAP1 3'UTR 0.17 TCGA-VS-A9UH-01 8 88218350 88218350 G A CNBD1 Nonsense_Mutation p.W187* 0.05 TCGA-VS-A9UH-01 9 117350073 117350073 C G ATP6V1G1 5'UTR 0.31 TCGA-VS-A9UH-01 9 125670869 125670869 C G ZBTB6 3'UTR 0.25 TCGA-VS-A9UH-01 9 125797546 125797546 G A GPR21 Missense_Mutation p.S234N 0.24 tolerated(0.17) benign(0.018) TCGA-VS-A9UH-01 9 139743980 139743980 C G PHPT1 Missense_Mutation p.S33C 0.33 deleterious(0.03) possibly_damaging(0.772) TCGA-VS-A9UH-01 9 140175980 140175980 G T TOR4A 3'UTR 0.23 TCGA-VS-A9UH-01 9 19372165 19372165 C G DENND4C Silent p.L1908L 0.26 TCGA-VS-A9UH-01 9 34250655 34250655 G C UBAP1 Splice_Site p.X487_splice 0.25 TCGA-VS-A9UH-01 9 35045243 35045243 C T C9orf131 Nonsense_Mutation p.Q873* 0.21 TCGA-VS-A9UH-01 9 88923364 88923364 G C ZCCHC6 Nonsense_Mutation p.S1273* 0.18 TCGA-VS-A9UH-01 9 91159345 91159345 G A NXNL2 Silent p.V118V 0.23 TCGA-VS-A9UH-01 9 95599327 95599327 C G ANKRD19P RNA 0.06 TCGA-VS-A9UH-01 X 113965962 113965962 G C HTR2C Missense_Mutation p.D99H 0.38 deleterious(0) probably_damaging(1) TCGA-VS-A9UH-01 X 130678973 130678973 G C OR13H1 Nonstop_Mutation p.*309Sext*10 0.38 TCGA-VS-A9UH-01 X 133609223 133609223 T G HPRT1 Silent p.L49L 0.16 TCGA-VS-A9UH-01 X 144905810 144905810 C T SLITRK2 Silent p.L623L 0.23 TCGA-VS-A9UH-01 X 152853855 152853855 G A FAM58A Nonsense_Mutation p.Q237* 0.25 TCGA-VS-A9UH-01 X 23412222 23412222 G C PTCHD1 Missense_Mutation p.E863Q 0.19 tolerated(0.31) benign(0.221) TCGA-VS-A9UH-01 X 40450579 40450579 C G ATP6AP2 Missense_Mutation p.L88V 0.25 deleterious(0.01) possibly_damaging(0.624) TCGA-VS-A9UH-01 X 46433894 46433894 C T CHST7 Silent p.D176D 0.23 TCGA-VS-A9UH-01 X 48887741 48887741 G T TFE3 Silent p.L552L 0.30 TCGA-VS-A9UH-01 X 49641605 49641605 G C USP27X 5'Flank 0.22 TCGA-VS-A9UH-01 X 53620441 53620441 C G HUWE1 Missense_Mutation p.K1208N 0.23 probably_damaging(0.982) TCGA-VS-A9UH-01 X 54497775 54497775 C T FGD1 Silent p.L151L 0.15 TCGA-VS-A9UH-01 X 71426279 71426279 G A ERCC6L Silent p.L780L 0.13 TCGA-VS-A9UH-01 X 90692777 90692777 C G PABPC5 3'UTR 0.16 TCGA-VS-A9UI-01 10 126715255 126715255 C T CTBP2 Silent p.Q358Q 0.27 TCGA-VS-A9UI-01 10 135025267 135025267 G A KNDC1 Missense_Mutation p.G1381S 0.31 tolerated(0.44) benign(0.009) TCGA-VS-A9UI-01 10 18802538 18802538 C T CACNB2 Intron 0.25 TCGA-VS-A9UI-01 10 23729220 23729220 G A OTUD1 Silent p.V278V 0.29 TCGA-VS-A9UI-01 10 43089198 43089198 G A ZNF33B Silent p.L400L 0.31 TCGA-VS-A9UI-01 10 50294021 50294021 C T VSTM4 Missense_Mutation p.E169K 0.24 tolerated(0.58) benign(0.002) TCGA-VS-A9UI-01 10 74235016 74235016 G A MICU1 Missense_Mutation p.R259C 0.41 deleterious(0.01) possibly_damaging(0.637) TCGA-VS-A9UI-01 11 128841003 128841003 C T ARHGAP32 Missense_Mutation p.D1355N 0.42 tolerated_low_confidence(0.11) benign(0.051) TCGA-VS-A9UI-01 11 20805347 20805347 G A NELL1 Silent p.V102V 0.23 TCGA-VS-A9UI-01 11 61026665 61026665 G A VWCE Missense_Mutation p.P784S 0.56 tolerated_low_confidence(0.1) benign(0.021) TCGA-VS-A9UI-01 11 62435097 62435097 C T C11orf48 Missense_Mutation p.E146K 0.23 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-VS-A9UI-01 11 63312118 63312118 C T RARRES3 Silent p.S48S 0.04 TCGA-VS-A9UI-01 11 65486592 65486592 G A KAT5 Silent p.R527R 0.32 TCGA-VS-A9UI-01 11 66472532 66472532 G A SPTBN2 Missense_Mutation p.R739C 0.32 deleterious(0.01) possibly_damaging(0.817) TCGA-VS-A9UI-01 11 6654257 6654257 G A DCHS1 Missense_Mutation p.S829L 0.22 tolerated(0.07) probably_damaging(1) TCGA-VS-A9UI-01 11 67275084 67275084 C T CDK2AP2 Silent p.P53P 0.25 TCGA-VS-A9UI-01 11 72083975 72083975 C T CLPB Missense_Mutation p.A244T 0.27 tolerated_low_confidence(0.54) benign(0.001) TCGA-VS-A9UI-01 11 83544812 83544812 C G DLG2 Missense_Mutation p.E523Q 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-VS-A9UI-01 12 101683921 101683921 G C UTP20 Missense_Mutation p.D202H 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A9UI-01 12 118199247 118199247 C T KSR2 Silent p.P185P 0.27 TCGA-VS-A9UI-01 12 86373776 86373776 G A MGAT4C Missense_Mutation p.S243F 0.25 deleterious(0) probably_damaging(0.992) TCGA-VS-A9UI-01 13 109779983 109779983 C T MYO16 Intron 0.30 TCGA-VS-A9UI-01 13 23869600 23869600 C T SGCG Silent p.V184V 0.09 TCGA-VS-A9UI-01 14 105414305 105414305 C A AHNAK2 Missense_Mutation p.V2495L 0.24 benign(0.012) TCGA-VS-A9UI-01 14 105609074 105609074 C T JAG2 Silent p.A1225A 0.40 TCGA-VS-A9UI-01 14 20389683 20389683 G A OR4K5 Silent p.L306L 0.06 TCGA-VS-A9UI-01 14 23885330 23885330 C G MYH7 Silent p.L1612L 0.17 TCGA-VS-A9UI-01 15 28413587 28413587 C G HERC2 Missense_Mutation p.R3460T 0.31 benign(0.277) TCGA-VS-A9UI-01 15 29346502 29346502 G A APBA2 Missense_Mutation p.E139K 0.22 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-VS-A9UI-01 15 29561352 29561352 G A NDNL2 Silent p.I186I 0.36 TCGA-VS-A9UI-01 15 30918895 30918895 G A ARHGAP11B 5'UTR 0.28 TCGA-VS-A9UI-01 15 32988853 32988853 C T SCG5 3'UTR 0.44 TCGA-VS-A9UI-01 15 42060285 42060285 C G MGA 3'UTR 0.12 TCGA-VS-A9UI-01 15 43818217 43818217 G A MAP1A Missense_Mutation p.A1516T 0.33 benign(0.004) TCGA-VS-A9UI-01 15 67073822 67073822 C T SMAD6 Silent p.F480F 0.33 TCGA-VS-A9UI-01 15 74564086 74564086 A T CCDC33 Missense_Mutation p.N197Y 0.11 deleterious(0) probably_damaging(0.955) TCGA-VS-A9UI-01 15 78632764 78632764 C T CRABP1 5'UTR 0.06 TCGA-VS-A9UI-01 15 82511997 82511997 C T EFTUD1 Missense_Mutation p.R536Q 0.26 tolerated(0.94) benign(0.001) TCGA-VS-A9UI-01 15 85326307 85326307 C T ZNF592 Missense_Mutation p.P134L 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A9UI-01 16 28890842 28890842 G C ATP2A1 Missense_Mutation p.V53L 0.20 deleterious(0.02) benign(0.041) TCGA-VS-A9UI-01 16 30390500 30390500 C T SEPT1 Silent p.E260E 0.50 TCGA-VS-A9UI-01 16 30664332 30664332 G C PRR14 Missense_Mutation p.E138Q 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.597) TCGA-VS-A9UI-01 16 57984400 57984400 C G CNGB1 Missense_Mutation p.E307Q 0.06 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-VS-A9UI-01 16 70996042 70996042 C T HYDIN Splice_Site p.X1930_splice 0.10 TCGA-VS-A9UI-01 16 71570802 71570802 C T CHST4 Silent p.P74P 0.34 TCGA-VS-A9UI-01 16 77822595 77822595 G A VAT1L Missense_Mutation p.V6M 0.37 deleterious_low_confidence(0.03) benign(0.062) TCGA-VS-A9UI-01 17 12887930 12887930 G A ARHGAP44 Silent p.P674P 0.31 TCGA-VS-A9UI-01 17 12887939 12887939 C T ARHGAP44 Silent p.V677V 0.09 TCGA-VS-A9UI-01 17 25749588 25749588 G A TBC1D3P5 RNA 0.32 TCGA-VS-A9UI-01 17 34964404 34964404 G T MRM1 Missense_Mutation p.R280L 0.36 deleterious(0.01) benign(0.036) TCGA-VS-A9UI-01 17 37101295 37101295 C T FBXO47 Silent p.L237L 0.15 TCGA-VS-A9UI-01 17 37821607 37821607 G A TCAP 5'UTR 0.40 TCGA-VS-A9UI-01 17 39766739 39766739 A T KRT16 Missense_Mutation p.I375N 0.34 deleterious(0) probably_damaging(0.994) TCGA-VS-A9UI-01 17 40277738 40277738 G A RAB5C 3'UTR 0.07 TCGA-VS-A9UI-01 17 43308024 43308024 C T FMNL1 Silent p.N61N 0.30 TCGA-VS-A9UI-01 17 48226597 48226597 C G PPP1R9B Missense_Mutation p.E426Q 0.11 deleterious(0.03) benign(0.11) TCGA-VS-A9UI-01 17 5085337 5085337 C G ZNF594 Missense_Mutation p.E739Q 0.10 deleterious(0.02) benign(0.009) TCGA-VS-A9UI-01 17 65988201 65988201 A G C17orf58 Missense_Mutation p.M41T 0.22 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-VS-A9UI-01 17 74169807 74169807 C T RNF157 Missense_Mutation p.R91Q 0.36 deleterious(0) probably_damaging(0.966) TCGA-VS-A9UI-01 17 74387890 74387890 G A UBE2O Missense_Mutation p.T1052I 0.21 deleterious(0) benign(0.233) TCGA-VS-A9UI-01 17 76162047 76162047 C T C17orf99 Missense_Mutation p.R240C 0.33 deleterious_low_confidence(0.01) benign(0.001) TCGA-VS-A9UI-01 17 7680199 7680199 A T DNAH2 Nonsense_Mutation p.K1684* 0.50 TCGA-VS-A9UI-01 18 19088516 19088516 C A GREB1L Missense_Mutation p.L1567M 0.19 deleterious(0) probably_damaging(0.972) TCGA-VS-A9UI-01 18 22806822 22806822 C T ZNF521 Missense_Mutation p.V354M 0.20 tolerated_low_confidence(1) benign(0.28) TCGA-VS-A9UI-01 18 24628449 24628449 C A CHST9 Missense_Mutation p.R47I 0.05 deleterious(0.03) benign(0.178) TCGA-VS-A9UI-01 18 29340567 29340567 C T SLC25A52 Missense_Mutation p.D30N 0.31 tolerated(0.17) benign(0.359) TCGA-VS-A9UI-01 18 63526229 63526229 G A CDH7 Missense_Mutation p.E481K 0.17 deleterious(0.03) benign(0.022) TCGA-VS-A9UI-01 18 905383 905383 G A ADCYAP1 5'UTR 0.20 TCGA-VS-A9UI-01 19 18888042 18888042 C T CRTC1 Silent p.G601G 0.06 TCGA-VS-A9UI-01 19 36303119 36303119 G A PRODH2 Missense_Mutation p.R219W 0.13 deleterious(0) possibly_damaging(0.676) TCGA-VS-A9UI-01 19 3641804 3641804 C T PIP5K1C Silent p.P562P 0.33 TCGA-VS-A9UI-01 19 37975907 37975907 G A ZNF570 Silent p.Q461Q 0.14 TCGA-VS-A9UI-01 19 43349277 43349277 C T PSG10P RNA 0.11 TCGA-VS-A9UI-01 19 43349285 43349285 C T PSG10P RNA 0.10 TCGA-VS-A9UI-01 19 43428730 43428730 C G PSG7 3'UTR 0.26 TCGA-VS-A9UI-01 19 49425773 49425773 G A NUCB1 3'UTR 0.12 TCGA-VS-A9UI-01 19 49902375 49902375 C T CCDC155 Silent p.S241S 0.12 TCGA-VS-A9UI-01 19 52954464 52954464 C T ZNF578 5'Flank 0.14 TCGA-VS-A9UI-01 19 53794555 53794555 C T BIRC8 5'UTR 0.10 TCGA-VS-A9UI-01 19 53848828 53848828 C T ZNF845 Nonsense_Mutation p.Q29* 0.18 TCGA-VS-A9UI-01 19 54410051 54410051 G A PRKCG Missense_Mutation p.D666N 0.37 tolerated(0.45) benign(0.018) TCGA-VS-A9UI-01 19 55945080 55945080 G A SHISA7 Missense_Mutation p.R354W 0.33 tolerated(0.18) possibly_damaging(0.895) TCGA-VS-A9UI-01 19 58265070 58265070 C T ZNF776 Missense_Mutation p.S191L 0.11 tolerated(0.16) possibly_damaging(0.689) TCGA-VS-A9UI-01 19 7696640 7696640 G A PCP2 Nonsense_Mutation p.Q116* 0.31 TCGA-VS-A9UI-01 1 109394967 109394967 G A AKNAD1 Missense_Mutation p.S107L 0.27 deleterious(0) probably_damaging(0.962) TCGA-VS-A9UI-01 1 144922006 144922006 C T PDE4DIP Silent p.L341L 0.07 TCGA-VS-A9UI-01 1 145663289 145663289 G A RNF115 Missense_Mutation p.R117K 0.06 tolerated(0.07) possibly_damaging(0.558) TCGA-VS-A9UI-01 1 146397396 146397396 G A NBPF12 Silent p.L71L 0.27 TCGA-VS-A9UI-01 1 152282185 152282185 G C FLG Nonsense_Mutation p.S1726* 0.18 TCGA-VS-A9UI-01 1 152325724 152325724 C A FLG2 Missense_Mutation p.G1513V 0.13 benign(0.09) TCGA-VS-A9UI-01 1 154144861 154144861 G A TPM3 Intron 0.33 TCGA-VS-A9UI-01 1 155691314 155691314 C T DAP3 Missense_Mutation p.H59Y 0.19 deleterious(0) probably_damaging(0.958) TCGA-VS-A9UI-01 1 160164913 160164913 C T CASQ1 Missense_Mutation p.H193Y 0.26 tolerated(0.39) benign(0.04) TCGA-VS-A9UI-01 1 160165286 160165286 C T CASQ1 Missense_Mutation p.H205Y 0.10 deleterious(0.02) possibly_damaging(0.734) TCGA-VS-A9UI-01 1 160786503 160786503 C T LY9 Missense_Mutation p.P398S 0.61 tolerated(0.51) possibly_damaging(0.657) TCGA-VS-A9UI-01 1 165322458 165322458 G A LMX1A Missense_Mutation p.R40W 0.19 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UI-01 1 185267400 185267400 C T IVNS1ABP Missense_Mutation p.G566S 0.06 deleterious(0) probably_damaging(1) TCGA-VS-A9UI-01 1 186282198 186282198 G A TPR 3'UTR 0.19 TCGA-VS-A9UI-01 1 201182540 201182540 G A IGFN1 Missense_Mutation p.S2840N 0.47 possibly_damaging(0.454) TCGA-VS-A9UI-01 1 203458274 203458274 C T PRELP 3'UTR 0.24 TCGA-VS-A9UI-01 1 210856799 210856799 C T KCNH1 Missense_Mutation p.E932K 0.43 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-VS-A9UI-01 1 216462661 216462661 A G USH2A Silent p.D644D 0.33 TCGA-VS-A9UI-01 1 216495236 216495236 C T USH2A Missense_Mutation p.E545K 0.11 benign(0.033) TCGA-VS-A9UI-01 1 220789326 220789326 C T MARK1 Missense_Mutation p.R181C 0.29 deleterious(0) probably_damaging(1) TCGA-VS-A9UI-01 1 247607344 247607344 C T NLRP3 Missense_Mutation p.L914F 0.24 deleterious(0.03) benign(0.065) TCGA-VS-A9UI-01 1 32742244 32742244 G A LCK Missense_Mutation p.S274N 0.31 tolerated(0.15) benign(0.001) TCGA-VS-A9UI-01 1 54233526 54233526 C A NDC1 3'UTR 0.48 TCGA-VS-A9UI-01 1 54233527 54233527 C A NDC1 3'UTR 0.49 TCGA-VS-A9UI-01 1 55273247 55273249 AAG - C1orf177 In_Frame_Del p.K83del 0.24 TCGA-VS-A9UI-01 1 62910756 62910756 C G USP1 Nonsense_Mutation p.S302* 0.26 TCGA-VS-A9UI-01 1 65098364 65098364 C T CACHD1 Nonsense_Mutation p.Q192* 0.22 TCGA-VS-A9UI-01 1 70300524 70300524 C A LRRC7 Missense_Mutation p.L150I 0.21 deleterious(0.02) possibly_damaging(0.765) TCGA-VS-A9UI-01 20 29611878 29611878 C G FRG1B 5'UTR 0.14 TCGA-VS-A9UI-01 20 32255021 32255021 G A ACTL10 5'UTR 0.15 TCGA-VS-A9UI-01 20 3687124 3687124 G A SIGLEC1 Silent p.P93P 0.66 TCGA-VS-A9UI-01 20 43567365 43567365 G A PABPC1L Silent p.P609P 0.11 TCGA-VS-A9UI-01 20 44539829 44539829 C T PLTP Silent p.L54L 0.50 TCGA-VS-A9UI-01 20 55012559 55012559 C T CASS4 Missense_Mutation p.P126S 0.39 tolerated(0.2) benign(0.009) TCGA-VS-A9UI-01 21 15954455 15954455 A G SAMSN1 Splice_Site p.X87_splice 0.06 TCGA-VS-A9UI-01 21 47537332 47537332 G A COL6A2 Missense_Mutation p.G340R 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A9UI-01 22 16256515 16256515 C T POTEH 3'UTR 0.13 TCGA-VS-A9UI-01 22 18910675 18910675 C T PRODH Missense_Mutation p.G229S 0.27 deleterious(0.04) possibly_damaging(0.791) TCGA-VS-A9UI-01 22 22349613 22349613 C T PRAMENP RNA 0.19 TCGA-VS-A9UI-01 22 29709097 29709097 T G RASL10A 3'UTR 0.62 TCGA-VS-A9UI-01 22 39102091 39102091 C A GTPBP1 Nonsense_Mutation p.S44* 0.37 TCGA-VS-A9UI-01 22 42090909 42090909 G A C22orf46 3'UTR 0.21 TCGA-VS-A9UI-01 22 43015909 43015909 C T CYB5R3 Missense_Mutation p.R292Q 0.06 tolerated(0.13) possibly_damaging(0.508) TCGA-VS-A9UI-01 2 101889452 101889452 G T CNOT11 3'Flank 0.27 TCGA-VS-A9UI-01 2 101889466 101889466 G A CNOT11 3'Flank 0.26 TCGA-VS-A9UI-01 2 113147254 113147254 C T RGPD8 Missense_Mutation p.E1090K 0.24 tolerated(0.63) benign(0.235) TCGA-VS-A9UI-01 2 113676405 113676405 G A IL37 3'UTR 0.43 TCGA-VS-A9UI-01 2 16086046 16086046 G A MYCN Missense_Mutation p.V408M 0.50 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UI-01 2 170606926 170606926 G A KLHL23 3'UTR 0.39 TCGA-VS-A9UI-01 2 170804062 170804062 G A UBR3 Missense_Mutation p.G974D 0.19 tolerated(0.22) benign(0.05) TCGA-VS-A9UI-01 2 182322504 182322504 G A ITGA4 Silent p.A41A 0.31 TCGA-VS-A9UI-01 2 21228632 21228632 C T APOB Missense_Mutation p.R3703H 0.27 benign(0.001) TCGA-VS-A9UI-01 2 230679029 230679029 G A TRIP12 Nonsense_Mutation p.Q534* 0.25 TCGA-VS-A9UI-01 2 232390125 232390125 C T NMUR1 Missense_Mutation p.V304M 0.37 tolerated(0.13) benign(0.315) TCGA-VS-A9UI-01 2 241405794 241405794 G A GPC1 3'UTR 0.29 TCGA-VS-A9UI-01 2 27844446 27844446 C T ZNF512 3'UTR 0.15 TCGA-VS-A9UI-01 2 3381457 3381457 C G TSSC1 Missense_Mutation p.E2Q 0.09 deleterious(0.01) possibly_damaging(0.775) TCGA-VS-A9UI-01 2 55122092 55122092 G A EML6 Nonsense_Mutation p.W928* 0.22 TCGA-VS-A9UI-01 2 60688103 60688103 C T BCL11A Silent p.A648A 0.17 TCGA-VS-A9UI-01 2 69691643 69691643 G C AAK1 3'Flank 0.08 TCGA-VS-A9UI-01 2 71043427 71043427 G C CLEC4F Missense_Mutation p.F362L 0.10 tolerated(1) benign(0.001) TCGA-VS-A9UI-01 2 88484919 88484919 G A THNSL2 Missense_Mutation p.E384K 0.19 tolerated(0.06) benign(0.292) TCGA-VS-A9UI-01 3 105421284 105421284 C T CBLB Missense_Mutation p.R538K 0.17 tolerated(0.15) benign(0) TCGA-VS-A9UI-01 3 120122095 120122095 C G FSTL1 Missense_Mutation p.E230Q 0.13 tolerated(0.17) benign(0.071) TCGA-VS-A9UI-01 3 126207086 126207086 C T UROC1 Missense_Mutation p.R642H 0.29 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UI-01 3 132350257 132350257 G A ACAD11 Missense_Mutation p.H257Y 0.20 tolerated(1) benign(0.001) TCGA-VS-A9UI-01 3 142567139 142567139 A C PCOLCE2 Missense_Mutation p.M123R 0.40 deleterious(0.03) benign(0.392) TCGA-VS-A9UI-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-VS-A9UI-01 3 42680087 42680087 G T NKTR Missense_Mutation p.C964F 0.23 tolerated_low_confidence(0.65) benign(0.022) TCGA-VS-A9UI-01 3 44968168 44968168 C T ZDHHC3 3'UTR 0.21 TCGA-VS-A9UI-01 3 50362901 50362901 C T TUSC2 3'UTR 0.08 TCGA-VS-A9UI-01 3 52537497 52537497 G A STAB1 Missense_Mutation p.D278N 0.10 tolerated(0.49) benign(0.007) TCGA-VS-A9UI-01 3 52613150 52613150 G A PBRM1 Silent p.L1126L 0.17 TCGA-VS-A9UI-01 3 7782558 7782558 C T GRM7 3'UTR 0.10 TCGA-VS-A9UI-01 3 97731266 97731266 C T GABRR3 Splice_Site 0.30 TCGA-VS-A9UI-01 4 100515912 100515912 A G MTTP Missense_Mutation p.T261A 0.26 tolerated(0.19) benign(0.029) TCGA-VS-A9UI-01 4 155528084 155528084 C T FGG Missense_Mutation p.R301H 0.15 deleterious(0) probably_damaging(1) TCGA-VS-A9UI-01 4 170913084 170913084 G C MFAP3L Missense_Mutation p.F225L 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-VS-A9UI-01 4 184605927 184605927 G A TRAPPC11 Silent p.L500L 0.26 TCGA-VS-A9UI-01 4 39000518 39000518 C T TMEM156 Missense_Mutation p.E34K 0.09 tolerated(0.16) possibly_damaging(0.449) TCGA-VS-A9UI-01 4 47514631 47514631 C T ATP10D Missense_Mutation p.S25L 0.36 tolerated(0.22) benign(0.002) TCGA-VS-A9UI-01 4 527766 527766 C T PIGG Missense_Mutation p.R911C 0.18 deleterious(0.01) benign(0.205) TCGA-VS-A9UI-01 4 53294 53294 C T ZNF595 5'UTR 0.09 TCGA-VS-A9UI-01 4 72332226 72332226 A T SLC4A4 Missense_Mutation p.Q521H 0.11 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UI-01 4 84368060 84368060 T C HELQ Silent p.K440K 0.06 TCGA-VS-A9UI-01 4 87028472 87028472 C G MAPK10 Silent p.V90V 0.06 TCGA-VS-A9UI-01 5 100143388 100143388 C G ST8SIA4 3'UTR 0.22 TCGA-VS-A9UI-01 5 112227665 112227665 G A ZRSR1 Missense_Mutation p.R110K 0.10 tolerated(0.12) benign(0.067) TCGA-VS-A9UI-01 5 122163341 122163341 G A SNX2 Silent p.Q503Q 0.28 TCGA-VS-A9UI-01 5 13759086 13759086 A G DNAH5 Silent p.L3430L 0.18 TCGA-VS-A9UI-01 5 140797847 140797847 G C PCDHGB7 Missense_Mutation p.E141Q 0.08 tolerated(0.31) probably_damaging(0.978) TCGA-VS-A9UI-01 5 14359589 14359589 C G TRIO Missense_Mutation p.I780M 0.30 probably_damaging(0.994) TCGA-VS-A9UI-01 5 148388529 148388529 C T SH3TC2 Silent p.A1121A 0.21 TCGA-VS-A9UI-01 5 176016579 176016579 G A CDHR2 Silent p.P1056P 0.38 TCGA-VS-A9UI-01 5 23527460 23527460 C T PRDM9 Missense_Mutation p.R755W 0.33 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UI-01 5 35646870 35646870 C T SPEF2 Silent p.L229L 0.33 TCGA-VS-A9UI-01 5 36268344 36268344 C T RANBP3L Missense_Mutation p.M98I 0.12 tolerated(0.49) benign(0.005) TCGA-VS-A9UI-01 5 64466550 64466550 G C ADAMTS6 Silent p.L1046L 0.10 TCGA-VS-A9UI-01 5 9042925 9042925 C G SEMA5A 3'UTR 0.18 TCGA-VS-A9UI-01 6 111587208 111587208 C T KIAA1919 Missense_Mutation p.A148V 0.24 tolerated(0.45) benign(0.009) TCGA-VS-A9UI-01 6 117240317 117240317 G A RFX6 Missense_Mutation p.R347K 0.18 tolerated(0.07) possibly_damaging(0.464) TCGA-VS-A9UI-01 6 128643399 128643399 G A PTPRK Nonsense_Mutation p.Q94* 0.16 TCGA-VS-A9UI-01 6 138575095 138575095 G A KIAA1244 Silent p.L248L 0.30 TCGA-VS-A9UI-01 6 151738455 151738455 C T RMND1 Missense_Mutation p.D387N 0.24 tolerated(0.22) benign(0.354) TCGA-VS-A9UI-01 6 158497680 158497680 G A SYNJ2 Missense_Mutation p.G772E 0.20 deleterious(0) probably_damaging(0.954) TCGA-VS-A9UI-01 6 17294014 17294014 G A RBM24 3'UTR 0.24 TCGA-VS-A9UI-01 6 28227302 28227302 C T NKAPL Silent p.L51L 0.28 TCGA-VS-A9UI-01 6 33359662 33359662 A G KIFC1 5'UTR 0.22 TCGA-VS-A9UI-01 6 39881575 39881575 G A MOCS1 Silent p.F196F 0.25 TCGA-VS-A9UI-01 7 100238796 100238796 C T TFR2 Missense_Mutation p.R30Q 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-VS-A9UI-01 7 11076682 11076682 G C PHF14 Missense_Mutation p.E648D 0.06 tolerated(0.32) benign(0.444) TCGA-VS-A9UI-01 7 115580688 115580688 G A TFEC Silent p.L321L 0.30 TCGA-VS-A9UI-01 7 128441452 128441452 C T CCDC136 Missense_Mutation p.R187C 0.39 deleterious(0.01) probably_damaging(1) TCGA-VS-A9UI-01 7 133580396 133580396 G C EXOC4 Silent p.L593L 0.21 TCGA-VS-A9UI-01 7 155493482 155493482 T C RBM33 Silent p.L195L 0.64 TCGA-VS-A9UI-01 7 1784764 1784764 G A ELFN1 Missense_Mutation p.G178S 0.35 tolerated(0.66) benign(0.041) TCGA-VS-A9UI-01 7 24846397 24846397 C T OSBPL3 Silent p.Q814Q 0.25 TCGA-VS-A9UI-01 7 82582797 82582797 G A PCLO Missense_Mutation p.S2491F 0.31 unknown(0) TCGA-VS-A9UI-01 8 124265636 124265636 C T ZHX1 Missense_Mutation p.E851K 0.09 tolerated(0.57) benign(0.394) TCGA-VS-A9UI-01 8 146107604 146107604 G A ZNF250 Missense_Mutation p.R327W 0.08 deleterious(0.04) probably_damaging(0.987) TCGA-VS-A9UI-01 8 26265755 26265755 C T BNIP3L Silent p.F158F 0.06 TCGA-VS-A9UI-01 8 56715032 56715032 G T TGS1 Missense_Mutation p.K622N 0.27 tolerated(0.05) benign(0.037) TCGA-VS-A9UI-01 9 116050499 116050499 C T PRPF4 Missense_Mutation p.A327V 0.37 deleterious(0.01) possibly_damaging(0.507) TCGA-VS-A9UI-01 9 126776386 126776386 G A LHX2 Silent p.S89S 0.41 TCGA-VS-A9UI-01 9 139908702 139908702 C T ABCA2 Silent p.E1386E 0.44 TCGA-VS-A9UI-01 9 2718594 2718594 G A KCNV2 Missense_Mutation p.M285I 0.30 deleterious(0.02) benign(0.003) TCGA-VS-A9UI-01 X 105280858 105280858 C G SERPINA7 Missense_Mutation p.K64N 0.29 deleterious(0.02) benign(0.103) TCGA-VS-A9UI-01 X 119010474 119010474 C T NDUFA1 Intron 0.49 TCGA-VS-A9UI-01 X 139865646 139865646 C G CDR1 3'UTR 0.29 TCGA-VS-A9UI-01 X 140714185 140714185 G A RP1-171K16.5 RNA 0.28 TCGA-VS-A9UI-01 X 144904854 144904854 C T SLITRK2 Missense_Mutation p.P304L 0.24 tolerated(0.19) benign(0.044) TCGA-VS-A9UI-01 X 144905830 144905830 C A SLITRK2 Missense_Mutation p.F629L 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-VS-A9UI-01 X 152846746 152846746 G C ATP2B3 3'UTR 0.60 TCGA-VS-A9UJ-01 10 105215387 105215387 C T CALHM1 Missense_Mutation p.D225N 0.53 tolerated(0.07) benign(0.017) TCGA-VS-A9UJ-01 10 11543181 11543182 - A USP6NL Frame_Shift_Ins p.P119Tfs*7 0.26 TCGA-VS-A9UJ-01 10 119078441 119078441 C T PDZD8 Missense_Mutation p.C347Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UJ-01 10 123845945 123845945 C T TACC2 Silent p.S1310S 0.31 TCGA-VS-A9UJ-01 10 1245968 1245968 T C ADARB2 Missense_Mutation p.H601R 0.38 tolerated(0.75) benign(0.01) TCGA-VS-A9UJ-01 10 125767875 125767875 G A CHST15 3'UTR 0.33 TCGA-VS-A9UJ-01 10 126308236 126308238 AAA TCTT FAM53B 3'UTR 0.17 TCGA-VS-A9UJ-01 10 129676543 129676543 A G CLRN3 Missense_Mutation p.I184T 0.29 tolerated(0.17) benign(0.005) TCGA-VS-A9UJ-01 10 131965225 131965225 G A GLRX3 Missense_Mutation p.A232T 0.34 tolerated(0.33) benign(0.003) TCGA-VS-A9UJ-01 10 134712518 134712518 T C TTC40 Missense_Mutation p.K1055R 0.31 tolerated(0.39) benign(0.014) TCGA-VS-A9UJ-01 10 21134283 21134283 C A NEBL Missense_Mutation p.E377D 0.30 deleterious(0) benign(0.201) TCGA-VS-A9UJ-01 10 24508692 24508692 G - KIAA1217 Frame_Shift_Del p.R73Efs*22 0.34 TCGA-VS-A9UJ-01 10 24822124 24822124 G A KIAA1217 Silent p.E1124E 0.33 TCGA-VS-A9UJ-01 10 26414478 26414478 T C MYO3A Silent p.R685R 0.18 TCGA-VS-A9UJ-01 10 27459253 27459254 - A MASTL Frame_Shift_Ins p.I458Nfs*5 0.13 TCGA-VS-A9UJ-01 10 27484207 27484207 A - ACBD5 3'UTR 0.39 TCGA-VS-A9UJ-01 10 3124623 3124623 C T PFKP Silent p.Y52Y 0.24 TCGA-VS-A9UJ-01 10 3149418 3149418 A - PFKP Frame_Shift_Del p.R265Gfs*2 0.27 TCGA-VS-A9UJ-01 10 31809832 31809833 - G ZEB1 Frame_Shift_Ins p.V527Gfs*3 0.40 TCGA-VS-A9UJ-01 10 33469149 33469149 C T NRP1 Missense_Mutation p.G876E 0.37 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 10 35299278 35299278 G A CUL2 Silent p.R752R 0.42 TCGA-VS-A9UJ-01 10 50167799 50167799 G A WDFY4 Missense_Mutation p.V2722M 0.42 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 10 50903064 50903064 G T C10orf53 Intron 0.27 TCGA-VS-A9UJ-01 10 52913031 52913031 G A PRKG1 Missense_Mutation p.G140D 0.29 tolerated(0.61) benign(0.001) TCGA-VS-A9UJ-01 10 54076999 54076999 C A DKK1 3'UTR 0.25 TCGA-VS-A9UJ-01 10 61834899 61834899 G A ANK3 Missense_Mutation p.R1914W 0.64 probably_damaging(0.985) TCGA-VS-A9UJ-01 10 63852592 63852592 C T ARID5B Missense_Mutation p.L1124F 0.38 tolerated(0.64) probably_damaging(0.986) TCGA-VS-A9UJ-01 10 70242342 70242342 T - SLC25A16 3'UTR 0.28 TCGA-VS-A9UJ-01 10 70263420 70263420 A G SLC25A16 Silent p.H130H 0.34 TCGA-VS-A9UJ-01 10 8006521 8006522 - A TAF3 Frame_Shift_Ins p.I352Nfs*3 0.23 TCGA-VS-A9UJ-01 10 86008754 86008754 A G RGR Missense_Mutation p.S109G 0.21 tolerated(0.54) benign(0.007) TCGA-VS-A9UJ-01 10 88753229 88753229 G A RP11-96C23.14 RNA 0.32 TCGA-VS-A9UJ-01 10 89692847 89692847 T C PTEN Missense_Mutation p.W111R 0.38 deleterious(0) probably_damaging(0.954) TCGA-VS-A9UJ-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.36 TCGA-VS-A9UJ-01 10 93784527 93784527 C T BTAF1 Silent p.C1626C 0.36 TCGA-VS-A9UJ-01 10 94297296 94297296 T - IDE Frame_Shift_Del p.K37Rfs*6 0.24 TCGA-VS-A9UJ-01 11 103052489 103052489 T C DYNC2H1 Silent p.D2117D 0.41 TCGA-VS-A9UJ-01 11 106856802 106856802 A G GUCY1A2 Missense_Mutation p.V120A 0.08 tolerated(0.23) benign(0.009) TCGA-VS-A9UJ-01 11 10819024 10819024 C T EIF4G2 3'UTR 0.10 TCGA-VS-A9UJ-01 11 108380187 108380187 C A EXPH5 3'UTR 0.41 TCGA-VS-A9UJ-01 11 114270767 114270767 G A C11orf71 Missense_Mutation p.A96V 0.39 deleterious_low_confidence(0.02) benign(0.201) TCGA-VS-A9UJ-01 11 120190075 120190075 G - POU2F3 3'UTR 0.32 TCGA-VS-A9UJ-01 11 1214796 1214796 C T MUC5AC RNA 0.56 TCGA-VS-A9UJ-01 11 122722514 122722514 G T CRTAM Missense_Mutation p.D103Y 0.37 deleterious(0.05) benign(0.373) TCGA-VS-A9UJ-01 11 123601305 123601305 G T ZNF202 Missense_Mutation p.L98I 0.51 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UJ-01 11 126201343 126201343 G A DCPS Silent p.L140L 0.43 TCGA-VS-A9UJ-01 11 126873417 126873417 C T KIRREL3 5'Flank 0.23 TCGA-VS-A9UJ-01 11 128681474 128681474 A G FLI1 3'UTR 0.16 TCGA-VS-A9UJ-01 11 128842885 128842885 A G ARHGAP32 Silent p.S1158S 0.31 TCGA-VS-A9UJ-01 11 131240692 131240692 A - NTM 5'UTR 0.25 TCGA-VS-A9UJ-01 11 27379042 27379042 G A CCDC34 Missense_Mutation p.R136C 0.25 tolerated(0.18) benign(0.004) TCGA-VS-A9UJ-01 11 27680696 27680696 T - BDNF Intron 0.35 TCGA-VS-A9UJ-01 11 30432299 30432299 T - MPPED2 3'UTR 0.27 TCGA-VS-A9UJ-01 11 31287053 31287053 C T DCDC1 Splice_Site p.X352_splice 0.29 TCGA-VS-A9UJ-01 11 45671846 45671846 C T CHST1 Missense_Mutation p.V210M 0.41 tolerated(0.07) probably_damaging(0.967) TCGA-VS-A9UJ-01 11 55322662 55322662 G T OR4C15 Nonsense_Mutation p.G294* 0.42 TCGA-VS-A9UJ-01 11 55999713 55999713 A G OR5T2 Missense_Mutation p.Y317H 0.36 deleterious(0.01) possibly_damaging(0.896) TCGA-VS-A9UJ-01 11 61170131 61170131 G A CPSF7 3'UTR 0.36 TCGA-VS-A9UJ-01 11 61490980 61490980 C T DAGLA Missense_Mutation p.R162C 0.38 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UJ-01 11 61507035 61507035 C - DAGLA Frame_Shift_Del p.S587Afs*3 0.27 TCGA-VS-A9UJ-01 11 6191262 6191262 A G OR52B2 Missense_Mutation p.C99R 0.24 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UJ-01 11 62289548 62289548 C T AHNAK Missense_Mutation p.G4114D 0.24 probably_damaging(0.976) TCGA-VS-A9UJ-01 11 62563624 62563624 G A NXF1 Missense_Mutation p.R459C 0.53 deleterious(0) probably_damaging(0.94) TCGA-VS-A9UJ-01 11 64004663 64004663 A - VEGFB Frame_Shift_Del p.K129Rfs*5 0.37 TCGA-VS-A9UJ-01 11 6578128 6578128 C A DNHD1 Missense_Mutation p.L2535M 0.50 possibly_damaging(0.822) TCGA-VS-A9UJ-01 11 69466021 69466021 C A CCND1 Missense_Mutation p.P287T 0.29 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 11 75508318 75508318 C A DGAT2 Silent p.G250G 0.69 TCGA-VS-A9UJ-01 11 76826599 76826599 G T CAPN5 Missense_Mutation p.W286C 0.30 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 11 78574113 78574113 C T TENM4 Silent p.T383T 0.22 TCGA-VS-A9UJ-01 12 103695960 103695960 G - C12orf42 Frame_Shift_Del p.R337Afs*19 0.30 TCGA-VS-A9UJ-01 12 108912265 108912265 G A FICD Missense_Mutation p.M130I 0.19 tolerated(0.29) benign(0) TCGA-VS-A9UJ-01 12 110784514 110784514 T - ATP2A2 3'UTR 0.39 TCGA-VS-A9UJ-01 12 110813919 110813919 G A ANAPC7 Missense_Mutation p.A521V 0.34 tolerated(0.11) benign(0.003) TCGA-VS-A9UJ-01 12 112150462 112150462 G T ACAD10 Splice_Site p.X315_splice 0.43 TCGA-VS-A9UJ-01 12 113592332 113592332 G A CCDC42B Silent p.R194R 0.44 TCGA-VS-A9UJ-01 12 11546428 11546428 G - PRB2 Frame_Shift_Del p.P195Hfs*236 0.24 TCGA-VS-A9UJ-01 12 117904588 117904588 C T KSR2 3'UTR 0.16 TCGA-VS-A9UJ-01 12 122246162 122246162 C - SETD1B Frame_Shift_Del p.Q200Rfs*15 0.20 TCGA-VS-A9UJ-01 12 122628557 122628557 C T MLXIP 3'UTR 0.22 TCGA-VS-A9UJ-01 12 124081314 124081314 G A TMED2 3'UTR 0.35 TCGA-VS-A9UJ-01 12 124809528 124809528 C T NCOR2 3'UTR 0.29 TCGA-VS-A9UJ-01 12 125292359 125292359 G A SCARB1 Silent p.G319G 0.26 TCGA-VS-A9UJ-01 12 133226412 133226412 C T POLE Missense_Mutation p.G1216S 0.48 tolerated(0.15) benign(0.04) TCGA-VS-A9UJ-01 12 133779756 133779756 C T ZNF268 Missense_Mutation p.T495I 0.36 deleterious(0) possibly_damaging(0.767) TCGA-VS-A9UJ-01 12 19646912 19646912 G A AEBP2 Missense_Mutation p.R389H 0.38 tolerated_low_confidence(0.19) possibly_damaging(0.743) TCGA-VS-A9UJ-01 12 2113458 2113458 G A DCP1B Missense_Mutation p.A47V 0.33 deleterious(0.02) benign(0.248) TCGA-VS-A9UJ-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.47 deleterious(0.04) possibly_damaging(0.506) TCGA-VS-A9UJ-01 12 39947615 39947615 T - ABCD2 3'UTR 0.37 TCGA-VS-A9UJ-01 12 40153629 40153629 T - SLC2A13 3'UTR 0.42 TCGA-VS-A9UJ-01 12 40697857 40697857 G A LRRK2 Missense_Mutation p.S1233N 0.36 tolerated(0.22) benign(0.185) TCGA-VS-A9UJ-01 12 49690730 49690730 A G PRPH Missense_Mutation p.E254G 0.29 deleterious(0) possibly_damaging(0.808) TCGA-VS-A9UJ-01 12 51446005 51446005 C G LETMD1 Silent p.G135G 0.33 TCGA-VS-A9UJ-01 12 51773247 51773247 G A GALNT6 Missense_Mutation p.P107S 0.56 deleterious(0.03) possibly_damaging(0.761) TCGA-VS-A9UJ-01 12 52639319 52639319 C T KRT7 Missense_Mutation p.R370W 0.45 deleterious(0) probably_damaging(0.918) TCGA-VS-A9UJ-01 12 53162307 53162307 C A KRT76 3'UTR 0.53 TCGA-VS-A9UJ-01 12 53427592 53427592 C - EIF4B Frame_Shift_Del p.Q330Kfs*5 0.31 TCGA-VS-A9UJ-01 12 56817448 56817448 C T TIMELESS Silent p.E670E 0.42 TCGA-VS-A9UJ-01 12 6078454 6078455 - G VWF Frame_Shift_Ins p.Q2551Pfs*16 0.21 TCGA-VS-A9UJ-01 12 7639112 7639112 G A CD163 Missense_Mutation p.A814V 0.42 deleterious(0.04) possibly_damaging(0.81) TCGA-VS-A9UJ-01 12 8022505 8022505 T G SLC2A14 5'UTR 0.24 TCGA-VS-A9UJ-01 12 88524079 88524079 T - CEP290 Frame_Shift_Del p.N212Tfs*14 0.34 TCGA-VS-A9UJ-01 12 88590178 88590179 TT - TMTC3 3'UTR 0.47 TCGA-VS-A9UJ-01 13 101890113 101890113 T C NALCN Missense_Mutation p.Y476C 0.05 tolerated(0.06) benign(0.045) TCGA-VS-A9UJ-01 13 20221233 20221233 C T MPHOSPH8 Silent p.D340D 0.38 TCGA-VS-A9UJ-01 13 20356745 20356745 C T PSPC1 Silent p.A51A 0.31 TCGA-VS-A9UJ-01 13 25820657 25820657 T C MTMR6 3'UTR 0.04 TCGA-VS-A9UJ-01 13 52343292 52343292 C A DHRS12 Missense_Mutation p.D282Y 0.30 deleterious(0) probably_damaging(0.96) TCGA-VS-A9UJ-01 13 84456329 84456329 G A SLITRK1 5'UTR 0.46 TCGA-VS-A9UJ-01 14 104025912 104025913 - A BAG5 3'Flank 0.47 TCGA-VS-A9UJ-01 14 104123998 104123998 A G KLC1 Missense_Mutation p.N126S 0.37 tolerated(0.78) benign(0.012) TCGA-VS-A9UJ-01 14 24838726 24838726 C T NFATC4 Missense_Mutation p.P104L 0.50 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UJ-01 14 36006051 36006051 T C INSM2 3'UTR 0.37 TCGA-VS-A9UJ-01 14 42077539 42077539 C T LRFN5 5'UTR 0.35 TCGA-VS-A9UJ-01 14 60193789 60193789 G - RTN1 Frame_Shift_Del p.P538Lfs*36 0.35 TCGA-VS-A9UJ-01 14 60923804 60923805 TA - C14orf39 Frame_Shift_Del p.T397* 0.43 TCGA-VS-A9UJ-01 14 64896929 64896929 A G MTHFD1 Missense_Mutation p.Q431R 0.57 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UJ-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.24 TCGA-VS-A9UJ-01 14 77491142 77491190 CGACACCCCCTTACCATTTTGCAAACAAAACAGAAAAACAAAACAAAAC GACACCCCCTTACCATTTTGCAAACAAAACAGAAAAACAAAACAAAACAG IRF2BPL 3'UTR 0.12 TCGA-VS-A9UJ-01 14 91366489 91366489 T - RPS6KA5 Frame_Shift_Del p.S448Vfs*9 0.27 TCGA-VS-A9UJ-01 15 24928111 24928111 G A NPAP1 3'UTR 0.44 TCGA-VS-A9UJ-01 15 25924866 25924866 G A ATP10A Silent p.D1374D 0.52 TCGA-VS-A9UJ-01 15 25959219 25959219 C T ATP10A Missense_Mutation p.G649D 0.34 tolerated(0.49) benign(0.219) TCGA-VS-A9UJ-01 15 31196907 31196907 G A FAN1 Missense_Mutation p.R14H 0.38 tolerated(0.06) benign(0.085) TCGA-VS-A9UJ-01 15 38644064 38644064 C T SPRED1 3'UTR 0.35 TCGA-VS-A9UJ-01 15 39874548 39874548 G A THBS1 Silent p.K74K 0.33 TCGA-VS-A9UJ-01 15 40759524 40759525 - G BAHD1 3'UTR 0.33 TCGA-VS-A9UJ-01 15 48064408 48064408 A - SEMA6D 3'UTR 0.37 TCGA-VS-A9UJ-01 15 58006972 58006972 A G POLR2M 3'UTR 0.16 TCGA-VS-A9UJ-01 15 76496955 76496955 G - C15orf27 3'UTR 0.30 TCGA-VS-A9UJ-01 15 77425519 77425519 G A PEAK1 Missense_Mutation p.A1302V 0.21 tolerated(0.19) benign(0.085) TCGA-VS-A9UJ-01 15 77906661 77906661 C T LINGO1 Missense_Mutation p.A530T 0.37 tolerated(0.38) benign(0.407) TCGA-VS-A9UJ-01 15 85234838 85234838 G A SEC11A Missense_Mutation p.S30L 0.39 deleterious(0.05) possibly_damaging(0.792) TCGA-VS-A9UJ-01 15 89739073 89739073 A - ABHD2 3'UTR 0.23 TCGA-VS-A9UJ-01 15 90611325 90611325 G A ZNF710 Missense_Mutation p.G319D 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 15 91421407 91421407 G A FURIN Missense_Mutation p.R238H 0.42 tolerated(0.26) benign(0.009) TCGA-VS-A9UJ-01 15 91461935 91461935 G A MAN2A2 Missense_Mutation p.G1084S 0.45 tolerated(0.66) benign(0.104) TCGA-VS-A9UJ-01 16 13329062 13329062 A G SHISA9 Silent p.P357P 0.30 TCGA-VS-A9UJ-01 16 1550617 1550617 C - TELO2 Frame_Shift_Del p.V402Cfs*6 0.40 TCGA-VS-A9UJ-01 16 19628131 19628131 G A C16orf62 Splice_Site p.X497_splice 0.32 TCGA-VS-A9UJ-01 16 22144258 22144258 G A VWA3A Missense_Mutation p.G637D 0.12 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UJ-01 16 2262348 2262348 C G PGP 3'UTR 0.24 TCGA-VS-A9UJ-01 16 2653122 2653122 G A PDPK1 3'UTR 0.37 TCGA-VS-A9UJ-01 16 3294556 3294556 G A MEFV Missense_Mutation p.T548I 0.23 tolerated(0.25) benign(0.03) TCGA-VS-A9UJ-01 16 3433480 3433480 G A ZSCAN32 Missense_Mutation p.A277V 0.30 tolerated(0.43) benign(0.01) TCGA-VS-A9UJ-01 16 5106088 5106088 G A C16orf89 Silent p.Y243Y 0.49 TCGA-VS-A9UJ-01 16 51169990 51169990 C - SALL1 3'UTR 0.30 TCGA-VS-A9UJ-01 16 51174807 51174807 G A SALL1 Silent p.S442S 0.48 TCGA-VS-A9UJ-01 16 53191255 53191255 T C CHD9 Silent p.F418F 0.29 TCGA-VS-A9UJ-01 16 54967958 54967958 A C IRX5 3'UTR 0.18 TCGA-VS-A9UJ-01 16 54967960 54967960 A C IRX5 3'UTR 0.17 TCGA-VS-A9UJ-01 16 57954322 57954322 G A CNGB1 Silent p.D590D 0.32 TCGA-VS-A9UJ-01 16 58583783 58583783 G A CNOT1 Missense_Mutation p.T1121M 0.35 tolerated(0.27) benign(0.012) TCGA-VS-A9UJ-01 16 624233 624233 G A PIGQ Silent p.R53R 0.21 TCGA-VS-A9UJ-01 16 67222796 67222796 C T EXOC3L1 Silent p.Q85Q 0.26 TCGA-VS-A9UJ-01 16 67655479 67655479 C T CTCF Nonsense_Mutation p.R448* 0.27 TCGA-VS-A9UJ-01 16 67701886 67701886 C A C16orf86 Silent p.P146P 0.29 TCGA-VS-A9UJ-01 16 69200969 69200969 T - CIRH1A Intron 0.31 TCGA-VS-A9UJ-01 16 703415 703415 G - WDR90 Frame_Shift_Del p.E401Sfs*34 0.17 TCGA-VS-A9UJ-01 16 70913316 70913316 G A HYDIN Missense_Mutation p.R3481W 0.37 probably_damaging(0.942) TCGA-VS-A9UJ-01 16 76556053 76556053 T C CNTNAP4 Missense_Mutation p.M812T 0.51 tolerated(0.06) benign(0.001) TCGA-VS-A9UJ-01 16 7761658 7761659 - A RBFOX1 3'UTR 0.41 TCGA-VS-A9UJ-01 16 79628618 79628618 A G MAF Intron 0.19 TCGA-VS-A9UJ-01 16 81744954 81744954 C - CMIP 3'UTR 0.35 TCGA-VS-A9UJ-01 16 83711873 83711873 C T CDH13 Missense_Mutation p.P496S 0.32 deleterious(0.03) probably_damaging(0.962) TCGA-VS-A9UJ-01 16 84218624 84218624 G A TAF1C 5'UTR 0.46 TCGA-VS-A9UJ-01 16 88594554 88594554 C T ZFPM1 Missense_Mutation p.A207V 0.45 tolerated(0.5) benign(0.074) TCGA-VS-A9UJ-01 16 89764076 89764076 C T SPATA2L Missense_Mutation p.R314H 0.38 tolerated(0.13) benign(0.006) TCGA-VS-A9UJ-01 17 10541482 10541482 C T MYH3 Missense_Mutation p.E1203K 0.38 deleterious(0) probably_damaging(0.989) TCGA-VS-A9UJ-01 17 1478799 1478799 G T SLC43A2 3'UTR 0.30 TCGA-VS-A9UJ-01 17 18793182 18793182 G A PRPSAP2 Silent p.S192S 0.46 TCGA-VS-A9UJ-01 17 21204200 21204200 C T MAP2K3 Silent p.T98T 0.33 TCGA-VS-A9UJ-01 17 26712057 26712057 A G SARM1 Splice_Site p.X431_splice 0.32 TCGA-VS-A9UJ-01 17 28886099 28886099 C - TBC1D29 5'UTR 0.36 TCGA-VS-A9UJ-01 17 29061816 29061816 G A CTD-2349P21.5 3'Flank 0.20 TCGA-VS-A9UJ-01 17 3571859 3571859 G A TAX1BP3 5'UTR 0.42 TCGA-VS-A9UJ-01 17 37809751 37809751 C T STARD3 5'UTR 0.38 TCGA-VS-A9UJ-01 17 37898961 37898961 C T GRB7 Missense_Mutation p.R123C 0.18 tolerated(0.09) benign(0.002) TCGA-VS-A9UJ-01 17 39324275 39324275 G A KRTAP4-3 Silent p.C50C 0.14 TCGA-VS-A9UJ-01 17 39742849 39742850 - GCT KRT14 In_Frame_Ins p.S79dup 0.11 TCGA-VS-A9UJ-01 17 40010636 40010636 T C KLHL11 Missense_Mutation p.K495E 0.50 tolerated(0.13) benign(0.092) TCGA-VS-A9UJ-01 17 42112011 42112011 A - LSM12 3'UTR 0.32 TCGA-VS-A9UJ-01 17 47797698 47797698 C T FAM117A Missense_Mutation p.G188E 0.30 deleterious(0.04) probably_damaging(0.963) TCGA-VS-A9UJ-01 17 55195743 55195743 C T AKAP1 Silent p.D834D 0.19 TCGA-VS-A9UJ-01 17 56081650 56081650 G T SRSF1 3'Flank 0.43 TCGA-VS-A9UJ-01 17 56289795 56289795 G A MKS1 Missense_Mutation p.L287F 0.42 tolerated(0.05) possibly_damaging(0.742) TCGA-VS-A9UJ-01 17 60769878 60769878 C - MRC2 3'UTR 0.33 TCGA-VS-A9UJ-01 17 7160186 7160186 C A ELP5 Silent p.S156S 0.20 TCGA-VS-A9UJ-01 17 73501901 73501901 C - CASKIN2 Splice_Site p.X279_splice 0.28 TCGA-VS-A9UJ-01 17 7360055 7360055 T C CHRNB1 3'UTR 0.27 TCGA-VS-A9UJ-01 17 7369650 7369650 C A ZBTB4 Silent p.G157G 0.45 TCGA-VS-A9UJ-01 17 7689577 7689577 G A DNAH2 Missense_Mutation p.G2089S 0.36 benign(0.327) TCGA-VS-A9UJ-01 17 77075569 77075569 A G ENGASE Splice_Site p.X139_splice 0.42 TCGA-VS-A9UJ-01 17 78179422 78179422 C T CARD14 Missense_Mutation p.R888C 0.36 tolerated(0.18) benign(0.04) TCGA-VS-A9UJ-01 17 80206863 80206863 C T CSNK1D Missense_Mutation p.G362D 0.43 tolerated_low_confidence(0.23) benign(0.15) TCGA-VS-A9UJ-01 18 14748484 14748484 C T ANKRD30B Silent p.S22S 0.15 TCGA-VS-A9UJ-01 18 29691761 29691761 C T RNF138 Missense_Mutation p.A52V 0.35 tolerated(0.52) benign(0.019) TCGA-VS-A9UJ-01 18 32948250 32948250 G - ZNF396 3'UTR 0.26 TCGA-VS-A9UJ-01 18 33234583 33234584 - TA GALNT1 5'UTR 0.44 TCGA-VS-A9UJ-01 18 45367516 45367517 - A SMAD2 3'UTR 0.36 TCGA-VS-A9UJ-01 18 55024304 55024304 A G ST8SIA3 Missense_Mutation p.M155V 0.29 benign(0) TCGA-VS-A9UJ-01 18 56204862 56204863 AT - ALPK2 Frame_Shift_Del p.C853Ffs*3 0.44 TCGA-VS-A9UJ-01 18 56587194 56587194 G A ZNF532 Missense_Mutation p.A559T 0.33 tolerated(0.27) benign(0.033) TCGA-VS-A9UJ-01 18 72776266 72776266 C T ZNF407 Nonsense_Mutation p.Q2197* 0.21 TCGA-VS-A9UJ-01 18 77246497 77246497 C T NFATC1 Missense_Mutation p.A768V 0.38 tolerated(0.13) benign(0.15) TCGA-VS-A9UJ-01 19 11364347 11364347 G - DOCK6 Frame_Shift_Del p.H34Tfs*14 0.24 TCGA-VS-A9UJ-01 19 11489343 11489343 T C EPOR Intron 0.26 TCGA-VS-A9UJ-01 19 11998732 11998732 C A ZNF69 5'UTR 0.35 TCGA-VS-A9UJ-01 19 13563791 13563791 G A CACNA1A Silent p.F146F 0.53 TCGA-VS-A9UJ-01 19 13874014 13874014 C T CCDC130 3'UTR 0.48 TCGA-VS-A9UJ-01 19 13988559 13988561 GAG - NANOS3 In_Frame_Del p.G171del 0.43 TCGA-VS-A9UJ-01 19 15918368 15918368 G T OR10H1 Silent p.T160T 0.45 TCGA-VS-A9UJ-01 19 19368663 19368663 G T HAPLN4 Missense_Mutation p.A391E 0.50 tolerated_low_confidence(0.06) unknown(0) TCGA-VS-A9UJ-01 19 281434 281434 C T PPAP2C Missense_Mutation p.G295D 0.56 tolerated(0.07) possibly_damaging(0.733) TCGA-VS-A9UJ-01 19 2834816 2834816 C T ZNF554 Missense_Mutation p.A528V 0.33 tolerated(0.07) benign(0.244) TCGA-VS-A9UJ-01 19 30193878 30193879 - CC C19orf12 Frame_Shift_Ins p.A67Gfs*7 0.31 TCGA-VS-A9UJ-01 19 33493758 33493758 T A RHPN2 Missense_Mutation p.E303D 0.26 tolerated(0.84) possibly_damaging(0.689) TCGA-VS-A9UJ-01 19 33792221 33792221 G A CEBPA 3'UTR 0.61 TCGA-VS-A9UJ-01 19 35898614 35898614 C T AC002511.1 RNA 0.56 TCGA-VS-A9UJ-01 19 36004212 36004212 C T DMKN Missense_Mutation p.G56S 0.20 tolerated(0.06) probably_damaging(0.996) TCGA-VS-A9UJ-01 19 36223901 36223905 GGCCT - KMT2B Frame_Shift_Del p.G2151Dfs*6 0.33 TCGA-VS-A9UJ-01 19 36228816 36228816 C T KMT2B Missense_Mutation p.T2572M 0.31 possibly_damaging(0.749) TCGA-VS-A9UJ-01 19 36245037 36245037 G A LIN37 Missense_Mutation p.M188I 0.24 tolerated(0.2) benign(0.004) TCGA-VS-A9UJ-01 19 36674042 36674042 C T ZNF565 Missense_Mutation p.E276K 0.37 tolerated(0.05) probably_damaging(0.997) TCGA-VS-A9UJ-01 19 3732038 3732038 T C TJP3 Splice_Site p.X248_splice 0.58 TCGA-VS-A9UJ-01 19 3752638 3752638 G T APBA3 Silent p.A421A 0.27 TCGA-VS-A9UJ-01 19 3789397 3789397 C A MATK 5'UTR 0.75 TCGA-VS-A9UJ-01 19 38865438 38865438 C T PSMD8 Missense_Mutation p.A66V 0.42 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-VS-A9UJ-01 19 45721510 45721510 C T EXOC3L2 Missense_Mutation p.G203D 0.29 tolerated(0.1) possibly_damaging(0.649) TCGA-VS-A9UJ-01 19 45862016 45862017 - T ERCC2 Intron 0.38 TCGA-VS-A9UJ-01 19 47104144 47104144 C T PPP5D1 Nonsense_Mutation p.W28* 0.21 TCGA-VS-A9UJ-01 19 47197383 47197383 G A PRKD2 Missense_Mutation p.P442L 0.33 deleterious(0.03) probably_damaging(1) TCGA-VS-A9UJ-01 19 49104391 49104392 - G FAM83E Frame_Shift_Ins p.R471Pfs*78 0.24 TCGA-VS-A9UJ-01 19 49842664 49842664 A G CD37 Silent p.L254L 0.29 TCGA-VS-A9UJ-01 19 50185515 50185515 C T PRMT1 Silent p.H137H 0.28 TCGA-VS-A9UJ-01 19 50338428 50338428 G A MED25 Silent p.Q556Q 0.30 TCGA-VS-A9UJ-01 19 52659677 52659677 C T ZNF836 Missense_Mutation p.G420D 0.52 tolerated(0.09) probably_damaging(0.998) TCGA-VS-A9UJ-01 19 54072639 54072639 G T ZNF331 Missense_Mutation p.Q3H 0.40 tolerated(0.83) benign(0) TCGA-VS-A9UJ-01 19 54759281 54759281 C A LILRB5 Missense_Mutation p.G274W 0.46 deleterious(0) probably_damaging(0.969) TCGA-VS-A9UJ-01 19 54967167 54967167 T C LENG8 Silent p.A349A 0.50 TCGA-VS-A9UJ-01 19 57764777 57764777 A G ZNF805 Missense_Mutation p.Q197R 0.16 tolerated(0.35) benign(0.002) TCGA-VS-A9UJ-01 19 58639937 58639937 C - ZNF329 Frame_Shift_Del p.E312Kfs*159 0.20 TCGA-VS-A9UJ-01 19 6755112 6755112 T C SH2D3A Silent p.R237R 0.28 TCGA-VS-A9UJ-01 19 7675769 7675769 C - CAMSAP3 Frame_Shift_Del p.R363Gfs*42 0.41 TCGA-VS-A9UJ-01 1 11007830 11007830 A C C1orf127 Missense_Mutation p.S788A 0.42 tolerated(1) benign(0.016) TCGA-VS-A9UJ-01 1 111216092 111216092 T C KCNA3 Missense_Mutation p.Y447C 0.42 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 1 111998856 111998856 T C ATP5F1 Silent p.A124A 0.37 TCGA-VS-A9UJ-01 1 113140668 113140668 C T ST7L Missense_Mutation p.D183N 0.39 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UJ-01 1 120311394 120311394 G T HMGCS2 Missense_Mutation p.P25H 0.47 deleterious_low_confidence(0.02) possibly_damaging(0.759) TCGA-VS-A9UJ-01 1 1235912 1235912 G A ACAP3 Silent p.L167L 0.35 TCGA-VS-A9UJ-01 1 12887544 12887544 G A PRAMEF11 Nonsense_Mutation p.Q105* 0.34 TCGA-VS-A9UJ-01 1 12888363 12888363 C T PRAMEF11 Missense_Mutation p.R54H 0.47 tolerated(0.37) benign(0.003) TCGA-VS-A9UJ-01 1 151264215 151264215 G - ZNF687 3'UTR 0.28 TCGA-VS-A9UJ-01 1 152193217 152193217 G A HRNR Silent p.H296H 0.42 TCGA-VS-A9UJ-01 1 154558257 154558257 C T ADAR Missense_Mutation p.R1096Q 0.38 tolerated(0.41) benign(0.036) TCGA-VS-A9UJ-01 1 154744734 154744734 G A KCNN3 Missense_Mutation p.R389C 0.44 deleterious(0) possibly_damaging(0.855) TCGA-VS-A9UJ-01 1 1572311 1572311 G - CDK11B Frame_Shift_Del p.P586Rfs*4 0.29 TCGA-VS-A9UJ-01 1 157736711 157736711 G A FCRL2 Silent p.L405L 0.40 TCGA-VS-A9UJ-01 1 159888661 159888661 G A TAGLN2 Nonsense_Mutation p.Q177* 0.33 TCGA-VS-A9UJ-01 1 161201155 161201155 C T NR1I3 Missense_Mutation p.G220R 0.41 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UJ-01 1 161970014 161970014 G A OLFML2B Nonsense_Mutation p.Q280* 0.18 TCGA-VS-A9UJ-01 1 165322404 165322404 G A LMX1A Nonsense_Mutation p.Q58* 0.37 TCGA-VS-A9UJ-01 1 165620324 165620324 C T MGST3 Missense_Mutation p.T64M 0.58 deleterious(0.03) possibly_damaging(0.473) TCGA-VS-A9UJ-01 1 165859538 165859538 G A UCK2 Missense_Mutation p.R66H 0.38 tolerated(0.09) possibly_damaging(0.688) TCGA-VS-A9UJ-01 1 171673152 171673152 G A VAMP4 3'UTR 0.43 TCGA-VS-A9UJ-01 1 179851649 179851649 C T TOR1AIP1 Silent p.D4D 0.40 TCGA-VS-A9UJ-01 1 181768669 181768669 G - CACNA1E 3'Flank 0.19 TCGA-VS-A9UJ-01 1 186088322 186088322 G T HMCN1 Splice_Site p.X3950_splice 0.40 TCGA-VS-A9UJ-01 1 192150516 192150516 G A RGS18 Silent p.K126K 0.35 TCGA-VS-A9UJ-01 1 196789023 196789023 G - CFHR1 Frame_Shift_Del p.G18Efs*11 0.26 TCGA-VS-A9UJ-01 1 197901216 197901216 G - LHX9 3'Flank 0.26 TCGA-VS-A9UJ-01 1 201047161 201047161 G A CACNA1S Missense_Mutation p.R489C 0.33 deleterious(0.01) possibly_damaging(0.849) TCGA-VS-A9UJ-01 1 201382229 201382229 G A TNNI1 Silent p.H70H 0.60 TCGA-VS-A9UJ-01 1 201838824 201838824 C G IPO9 Missense_Mutation p.T704R 0.47 deleterious(0) possibly_damaging(0.682) TCGA-VS-A9UJ-01 1 202715437 202715437 C T KDM5B Silent p.S677S 0.73 TCGA-VS-A9UJ-01 1 205273291 205273291 C T NUAK2 Missense_Mutation p.A392T 0.46 tolerated(0.32) benign(0.002) TCGA-VS-A9UJ-01 1 21306905 21306905 G - EIF4G3 Frame_Shift_Del p.Q90Nfs*43 0.33 TCGA-VS-A9UJ-01 1 220355682 220355682 A - RAB3GAP2 Frame_Shift_Del p.W743Gfs*32 0.33 TCGA-VS-A9UJ-01 1 222838778 222838778 A G MIA3 Silent p.S1847S 0.25 TCGA-VS-A9UJ-01 1 224346028 224346028 T C FBXO28 3'UTR 0.45 TCGA-VS-A9UJ-01 1 228470816 228470816 C T OBSCN Silent p.P3285P 0.52 TCGA-VS-A9UJ-01 1 22973931 22973931 C A C1QC Silent p.P131P 0.21 TCGA-VS-A9UJ-01 1 235909777 235909777 G A LYST Missense_Mutation p.R2611C 0.35 deleterious(0) possibly_damaging(0.704) TCGA-VS-A9UJ-01 1 23850941 23850941 C T E2F2 Missense_Mutation p.V98I 0.40 tolerated(0.37) benign(0.03) TCGA-VS-A9UJ-01 1 240656587 240656587 G A GREM2 Silent p.T63T 0.24 TCGA-VS-A9UJ-01 1 248436203 248436203 G A OR2T33 Missense_Mutation p.T305M 0.05 deleterious(0.01) benign(0.11) TCGA-VS-A9UJ-01 1 27088787 27088788 - GG ARID1A Frame_Shift_Ins p.Q802Vfs*32 0.26 TCGA-VS-A9UJ-01 1 3102783 3102783 G A PRDM16 Silent p.S44S 0.50 TCGA-VS-A9UJ-01 1 32133223 32133223 T C COL16A1 Missense_Mutation p.K1104E 0.42 unknown(0) TCGA-VS-A9UJ-01 1 35442033 35442033 G - RP11-244H3.1 RNA 0.26 TCGA-VS-A9UJ-01 1 3673426 3673426 C T CCDC27 Missense_Mutation p.P228L 0.41 deleterious(0) probably_damaging(0.958) TCGA-VS-A9UJ-01 1 3731836 3731836 G A CEP104 3'UTR 0.33 TCGA-VS-A9UJ-01 1 38005927 38005927 G A SNIP1 Missense_Mutation p.R253C 0.41 deleterious(0.01) possibly_damaging(0.47) TCGA-VS-A9UJ-01 1 43649277 43649277 C T WDR65 Nonsense_Mutation p.Q164* 0.33 TCGA-VS-A9UJ-01 1 45479265 45479265 G T UROD Splice_Site p.X93_splice 0.28 TCGA-VS-A9UJ-01 1 46165474 46165474 A G IPP 3'UTR 0.38 TCGA-VS-A9UJ-01 1 46499545 46499545 G T MAST2 Missense_Mutation p.K1203N 0.27 deleterious_low_confidence(0) possibly_damaging(0.479) TCGA-VS-A9UJ-01 1 46976202 46976202 G A DMBX1 Missense_Mutation p.R70H 0.44 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 1 75627129 75627129 T C LHX8 3'UTR 0.25 TCGA-VS-A9UJ-01 1 86954685 86954685 A G CLCA1 Missense_Mutation p.R397G 0.37 tolerated(0.1) benign(0.226) TCGA-VS-A9UJ-01 1 87810752 87810752 A G LMO4 3'UTR 0.12 TCGA-VS-A9UJ-01 1 89875897 89875897 T C GBP1P1 RNA 0.31 TCGA-VS-A9UJ-01 1 90180572 90180572 C T LRRC8C 3'UTR 0.19 TCGA-VS-A9UJ-01 1 91382293 91382293 A - ZNF644 3'UTR 0.38 TCGA-VS-A9UJ-01 1 94495002 94495003 - G ABCA4 Frame_Shift_Ins p.Q1513Pfs*42 0.42 TCGA-VS-A9UJ-01 1 94528249 94528249 C A ABCA4 Silent p.G607G 0.48 TCGA-VS-A9UJ-01 20 19702542 19702543 - G SLC24A3 3'UTR 0.31 TCGA-VS-A9UJ-01 20 21492086 21492086 A T NKX2-2 3'UTR 0.30 TCGA-VS-A9UJ-01 20 30232787 30232787 C A COX4I2 3'UTR 0.33 TCGA-VS-A9UJ-01 20 3734238 3734238 G - C20orf27 3'UTR 0.41 TCGA-VS-A9UJ-01 20 42788645 42788645 G A JPH2 Missense_Mutation p.A261V 0.50 tolerated(0.07) benign(0.268) TCGA-VS-A9UJ-01 20 45867063 45867063 A - ZMYND8 Intron 0.16 TCGA-VS-A9UJ-01 20 47730628 47730628 C T STAU1 3'UTR 0.45 TCGA-VS-A9UJ-01 20 49562458 49562458 T A DPM1 Missense_Mutation p.T100S 0.32 tolerated(0.33) benign(0.402) TCGA-VS-A9UJ-01 20 55209324 55209324 G A TFAP2C Missense_Mutation p.G308S 0.28 deleterious(0.02) benign(0.418) TCGA-VS-A9UJ-01 21 14417522 14417522 A G RNU6-614P 5'Flank 0.17 TCGA-VS-A9UJ-01 21 37612181 37612181 G A DOPEY2 Missense_Mutation p.V999M 0.38 tolerated(0.18) benign(0.085) TCGA-VS-A9UJ-01 21 43771027 43771027 C T TFF2 Missense_Mutation p.V14I 0.41 tolerated(0.78) benign(0.017) TCGA-VS-A9UJ-01 21 46066559 46066559 T C KRTAP10-11 Missense_Mutation p.C62R 0.29 deleterious(0.01) unknown(0) TCGA-VS-A9UJ-01 21 46396723 46396723 G A FAM207A 3'UTR 0.47 TCGA-VS-A9UJ-01 21 46927485 46927485 G A COL18A1 Missense_Mutation p.R1256Q 0.34 benign(0.074) TCGA-VS-A9UJ-01 22 17646146 17646146 C A CECR5-AS1 Intron 0.44 TCGA-VS-A9UJ-01 22 24563054 24563059 GCCCCC - CABIN1 In_Frame_Del p.P1824_A1825del 0.25 TCGA-VS-A9UJ-01 22 29153077 29153077 G T HSCB Nonsense_Mutation p.E210* 0.31 TCGA-VS-A9UJ-01 22 30659991 30659991 C - OSM Frame_Shift_Del p.E214Rfs*15 0.39 TCGA-VS-A9UJ-01 22 32589332 32589332 C - RFPL2 Intron 0.28 TCGA-VS-A9UJ-01 22 40801190 40801190 G A SGSM3 Missense_Mutation p.A174T 0.27 tolerated(0.21) benign(0.029) TCGA-VS-A9UJ-01 22 40817000 40817001 - G MKL1 Frame_Shift_Ins p.D245Gfs*72 0.28 TCGA-VS-A9UJ-01 22 46594251 46594251 C T PPARA 5'UTR 0.48 TCGA-VS-A9UJ-01 22 50283110 50283111 - T ZBED4 3'UTR 0.42 TCGA-VS-A9UJ-01 22 50297991 50297991 G - ALG12 Frame_Shift_Del p.Q386Rfs*75 0.41 TCGA-VS-A9UJ-01 22 50615829 50615829 C T PANX2 Missense_Mutation p.R230W 0.35 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 22 50660160 50660160 A G TUBGCP6 Silent p.A876A 0.36 TCGA-VS-A9UJ-01 22 50956240 50956240 T C NCAPH2 Splice_Site p.X140_splice 0.40 TCGA-VS-A9UJ-01 2 10045015 10045015 A T TAF1B Nonsense_Mutation p.K279* 0.37 TCGA-VS-A9UJ-01 2 101010219 101010219 T C CHST10 Missense_Mutation p.I187V 0.23 deleterious(0.03) possibly_damaging(0.549) TCGA-VS-A9UJ-01 2 106498105 106498105 G A NCK2 Missense_Mutation p.R183H 0.35 tolerated(0.33) benign(0.308) TCGA-VS-A9UJ-01 2 108487383 108487383 G C RGPD4 Missense_Mutation p.V975L 0.27 tolerated(1) benign(0) TCGA-VS-A9UJ-01 2 111395702 111395703 - A BUB1 Frame_Shift_Ins p.H1033Sfs*32 0.33 TCGA-VS-A9UJ-01 2 135710958 135710958 G A CCNT2 Silent p.A311A 0.38 TCGA-VS-A9UJ-01 2 152695192 152695192 C T CACNB4 3'UTR 0.16 TCGA-VS-A9UJ-01 2 157186374 157186374 G - NR4A2 Frame_Shift_Del p.Q109Sfs*5 0.18 TCGA-VS-A9UJ-01 2 166744891 166744891 G C TTC21B Missense_Mutation p.H1119Q 0.40 tolerated(1) benign(0.007) TCGA-VS-A9UJ-01 2 167263047 167263047 C A SCN7A Missense_Mutation p.K1364N 0.36 deleterious(0) probably_damaging(0.958) TCGA-VS-A9UJ-01 2 170366654 170366654 C T KLHL41 Silent p.C122C 0.52 TCGA-VS-A9UJ-01 2 186659798 186659798 A C FSIP2 Silent p.S2734S 0.47 TCGA-VS-A9UJ-01 2 196602809 196602809 G A DNAH7 Missense_Mutation p.P3971S 0.44 tolerated(0.81) benign(0.015) TCGA-VS-A9UJ-01 2 197672223 197672223 C T C2orf66 Missense_Mutation p.A100T 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-VS-A9UJ-01 2 201363746 201363746 A G KCTD18 Missense_Mutation p.L145P 0.39 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 2 204009367 204009368 - A NBEAL1 Frame_Shift_Ins p.V1604Sfs*3 0.32 TCGA-VS-A9UJ-01 2 20450778 20450778 C T PUM2 3'UTR 0.38 TCGA-VS-A9UJ-01 2 209025577 209025577 C - CRYGA Frame_Shift_Del p.G159Vfs*9 0.36 TCGA-VS-A9UJ-01 2 210824212 210824212 G A UNC80 Splice_Site p.X2463_splice 0.54 TCGA-VS-A9UJ-01 2 215798929 215798929 A G ABCA12 Missense_Mutation p.L2518P 0.36 tolerated(0.21) probably_damaging(0.982) TCGA-VS-A9UJ-01 2 219318848 219318848 G T USP37 3'UTR 0.34 TCGA-VS-A9UJ-01 2 234652190 234663541 2:234652190-234663541 - UGT1A10 large deletion 0.29 TCGA-VS-A9UJ-01 2 241078750 241078750 G A OTOS Missense_Mutation p.A36V 0.44 deleterious(0) probably_damaging(0.96) TCGA-VS-A9UJ-01 2 24261098 24261098 C T C2orf44 Missense_Mutation p.A423T 0.47 tolerated(0.22) benign(0.002) TCGA-VS-A9UJ-01 2 25456668 25456668 A C DNMT3A 3'UTR 0.21 TCGA-VS-A9UJ-01 2 26505794 26505794 T G HADHB Splice_Site p.X338_splice 0.39 TCGA-VS-A9UJ-01 2 27276399 27276399 C T AGBL5 Silent p.T115T 0.31 TCGA-VS-A9UJ-01 2 27663273 27663273 T C NRBP1 Missense_Mutation p.M347T 0.56 tolerated(0.15) benign(0.003) TCGA-VS-A9UJ-01 2 33952626 33952626 C T AC009499.1 Intron 0.44 TCGA-VS-A9UJ-01 2 55863267 55863267 A G PNPT1 3'UTR 0.42 TCGA-VS-A9UJ-01 2 70692818 70692818 C T TGFA Missense_Mutation p.D49N 0.24 deleterious(0) possibly_damaging(0.58) TCGA-VS-A9UJ-01 2 85051113 85051113 C T TRABD2A Missense_Mutation p.R384Q 0.28 deleterious(0) possibly_damaging(0.695) TCGA-VS-A9UJ-01 2 8998084 8998084 T A MBOAT2 3'UTR 0.28 TCGA-VS-A9UJ-01 3 114057699 114057699 T G ZBTB20 3'UTR 0.48 TCGA-VS-A9UJ-01 3 121258345 121258345 C T POLQ Missense_Mutation p.C189Y 0.38 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 3 123650239 123650240 - T CCDC14 Frame_Shift_Ins p.F528Ifs*2 0.23 TCGA-VS-A9UJ-01 3 128624975 128624975 C A ACAD9 Silent p.S387S 0.25 TCGA-VS-A9UJ-01 3 129137282 129137282 G A EFCAB12 Missense_Mutation p.P166S 0.26 tolerated(0.44) benign(0.018) TCGA-VS-A9UJ-01 3 129695643 129695643 G - TRH Frame_Shift_Del p.A107Lfs*23 0.29 TCGA-VS-A9UJ-01 3 141011229 141011229 C T ACPL2 Missense_Mutation p.R209W 0.58 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 3 141163077 141163077 T C ZBTB38 Missense_Mutation p.L616P 0.43 tolerated(0.05) benign(0.024) TCGA-VS-A9UJ-01 3 14485369 14485369 G T SLC6A6 Missense_Mutation p.G76V 0.41 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 3 148863194 148863194 C G HPS3 Missense_Mutation p.L342V 0.46 tolerated(0.28) benign(0.003) TCGA-VS-A9UJ-01 3 154001029 154001029 C T DHX36 Missense_Mutation p.R775K 0.35 tolerated(0.13) benign(0.125) TCGA-VS-A9UJ-01 3 154146617 154146617 C T GPR149 Missense_Mutation p.R263H 0.31 tolerated(0.33) benign(0.013) TCGA-VS-A9UJ-01 3 172118177 172118177 A G FNDC3B 3'UTR 0.40 TCGA-VS-A9UJ-01 3 178916957 178916957 G C PIK3CA Missense_Mutation p.R115P 0.31 tolerated(0.19) benign(0.413) TCGA-VS-A9UJ-01 3 183667603 183667603 C T ABCC5 Silent p.T1055T 0.46 TCGA-VS-A9UJ-01 3 184100462 184100462 G A CHRD Silent p.Q294Q 0.31 TCGA-VS-A9UJ-01 3 185635265 185635265 A - TRA2B 3'UTR 0.30 TCGA-VS-A9UJ-01 3 186015945 186015945 G A DGKG Missense_Mutation p.T73I 0.40 tolerated(0.05) benign(0.003) TCGA-VS-A9UJ-01 3 193032826 193032826 T G ATP13A5 Missense_Mutation p.K698T 0.36 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 3 193051649 193051649 G - ATP13A5 Frame_Shift_Del p.R388Gfs*3 0.18 TCGA-VS-A9UJ-01 3 195590892 195590892 C T TNK2 3'UTR 0.43 TCGA-VS-A9UJ-01 3 27332149 27332149 C T NEK10 Missense_Mutation p.V568I 0.40 tolerated(0.19) benign(0.048) TCGA-VS-A9UJ-01 3 32208938 32208938 C T GPD1L 3'UTR 0.56 TCGA-VS-A9UJ-01 3 39228071 39228071 G A XIRP1 Missense_Mutation p.P956S 0.53 tolerated(0.14) probably_damaging(0.991) TCGA-VS-A9UJ-01 3 42908365 42908371 GATTGAT AGATTGA ACKR2 3'UTR 0.19 TCGA-VS-A9UJ-01 3 4558231 4558231 C T ITPR1 Missense_Mutation p.A19V 0.21 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UJ-01 3 46416157 46416157 A G CCR5 3'UTR 0.24 TCGA-VS-A9UJ-01 3 47629218 47629219 - C SMARCC1 3'UTR 0.30 TCGA-VS-A9UJ-01 3 47712163 47712163 G T SMARCC1 Silent p.T628T 0.24 TCGA-VS-A9UJ-01 3 49750170 49750171 TG - RNF123 Intron 0.46 TCGA-VS-A9UJ-01 3 49762523 49762523 G T IP6K1 3'UTR 0.26 TCGA-VS-A9UJ-01 3 52255523 52255523 G A TLR9 Silent p.L1091L 0.25 TCGA-VS-A9UJ-01 3 74334503 74334503 C T CNTN3 Missense_Mutation p.G886D 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 3 99568175 99568175 C A FILIP1L Missense_Mutation p.R782M 0.08 deleterious(0) possibly_damaging(0.518) TCGA-VS-A9UJ-01 4 103538205 103538205 T A NFKB1 3'UTR 0.30 TCGA-VS-A9UJ-01 4 110667641 110667641 C T CFI Missense_Mutation p.R389H 0.26 tolerated(0.58) benign(0.013) TCGA-VS-A9UJ-01 4 110791080 110791080 C - LRIT3 Frame_Shift_Del p.T394Hfs*33 0.42 TCGA-VS-A9UJ-01 4 110901249 110901249 G A EGF Missense_Mutation p.M725I 0.50 deleterious(0.01) benign(0.288) TCGA-VS-A9UJ-01 4 124323227 124323227 C T SPRY1 Silent p.L161L 0.30 TCGA-VS-A9UJ-01 4 126413856 126413856 C T FAT4 3'UTR 0.31 TCGA-VS-A9UJ-01 4 146057630 146057630 G A OTUD4 3'UTR 0.31 TCGA-VS-A9UJ-01 4 159894376 159894376 C T C4orf45 Missense_Mutation p.G51E 0.42 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UJ-01 4 40762485 40762485 C G NSUN7 Missense_Mutation p.S111R 0.29 deleterious(0) probably_damaging(0.99) TCGA-VS-A9UJ-01 4 4421830 4421830 G A STX18 Silent p.R313R 0.34 TCGA-VS-A9UJ-01 4 48139366 48139366 T G TEC 3'UTR 0.11 TCGA-VS-A9UJ-01 4 54231748 54231748 C T SCFD2 Missense_Mutation p.A121T 0.29 tolerated(0.23) benign(0.282) TCGA-VS-A9UJ-01 4 6719287 6719288 TG - BLOC1S4 3'UTR 0.32 TCGA-VS-A9UJ-01 4 68928493 68928493 G A TMPRSS11F Intron 0.35 TCGA-VS-A9UJ-01 4 69817137 69817137 A - UGT2A3 Frame_Shift_Del p.F114Lfs*4 0.11 TCGA-VS-A9UJ-01 4 7056939 7056939 A G TADA2B 3'UTR 0.40 TCGA-VS-A9UJ-01 4 76568478 76568479 - TT G3BP2 3'UTR 0.23 TCGA-VS-A9UJ-01 4 78638605 78638606 - A CNOT6L 3'UTR 0.39 TCGA-VS-A9UJ-01 4 81791254 81791254 A - C4orf22 Frame_Shift_Del p.R167Dfs*9 0.56 TCGA-VS-A9UJ-01 4 84243470 84243470 A G HPSE Missense_Mutation p.L92P 0.32 deleterious(0.02) possibly_damaging(0.701) TCGA-VS-A9UJ-01 4 88057051 88057051 A T AFF1 3'UTR 0.48 TCGA-VS-A9UJ-01 4 89689185 89689185 C T FAM13A Missense_Mutation p.R495Q 0.24 tolerated(0.55) benign(0.002) TCGA-VS-A9UJ-01 4 89950665 89950665 C T FAM13A Missense_Mutation p.E55K 0.58 tolerated(0.41) benign(0.009) TCGA-VS-A9UJ-01 4 95255664 95255664 C T HPGDS Nonsense_Mutation p.W39* 0.35 TCGA-VS-A9UJ-01 4 959840 959840 C T DGKQ Silent p.T485T 0.35 TCGA-VS-A9UJ-01 4 96140294 96140294 G - UNC5C Frame_Shift_Del p.Q491Kfs*15 0.38 TCGA-VS-A9UJ-01 4 96761528 96761528 C T PDHA2 Missense_Mutation p.A76V 0.26 deleterious(0.02) benign(0.375) TCGA-VS-A9UJ-01 5 114861081 114861081 T - FEM1C Frame_Shift_Del p.R260Efs*7 0.30 TCGA-VS-A9UJ-01 5 140175702 140175702 G A PCDHA2 Missense_Mutation p.V385I 0.23 deleterious_low_confidence(0.01) benign(0.421) TCGA-VS-A9UJ-01 5 140229932 140229932 G A PCDHA9 Missense_Mutation p.A618T 0.23 tolerated_low_confidence(0.09) benign(0.005) TCGA-VS-A9UJ-01 5 140615641 140615641 C T PCDHB18 RNA 0.43 TCGA-VS-A9UJ-01 5 140745871 140745871 C T PCDHGA5 Silent p.F658F 0.39 TCGA-VS-A9UJ-01 5 140764776 140764776 C - PCDHGA7 Frame_Shift_Del p.Q772Sfs*5 0.29 TCGA-VS-A9UJ-01 5 140894714 140894714 C T DIAPH1 3'UTR 0.41 TCGA-VS-A9UJ-01 5 145665685 145665685 T A RBM27 3'UTR 0.33 TCGA-VS-A9UJ-01 5 145719509 145719509 G A POU4F3 Missense_Mutation p.M173I 0.32 tolerated(0.65) benign(0.001) TCGA-VS-A9UJ-01 5 146770914 146770914 C T DPYSL3 3'UTR 0.37 TCGA-VS-A9UJ-01 5 147594548 147594548 T A SPINK6 3'UTR 0.48 TCGA-VS-A9UJ-01 5 148747637 148747637 C - PCYOX1L Frame_Shift_Del p.L304Cfs*10 0.21 TCGA-VS-A9UJ-01 5 149751689 149751689 G T TCOF1 Nonsense_Mutation p.G254* 0.24 TCGA-VS-A9UJ-01 5 149825178 149825178 G A RPS14 Missense_Mutation p.R128W 0.40 deleterious(0.04) benign(0.067) TCGA-VS-A9UJ-01 5 16508724 16508724 C T FAM134B Intron 0.45 TCGA-VS-A9UJ-01 5 168096806 168096806 C T SLIT3 Missense_Mutation p.G1440S 0.39 deleterious(0.01) probably_damaging(1) TCGA-VS-A9UJ-01 5 176696802 176696802 A - NSD1 Frame_Shift_Del p.A1837Lfs*12 0.33 TCGA-VS-A9UJ-01 5 176885389 176885389 G A DBN1 Silent p.N484N 0.37 TCGA-VS-A9UJ-01 5 37065069 37065070 - A NIPBL 3'UTR 0.24 TCGA-VS-A9UJ-01 5 55247869 55247869 T - IL6ST Frame_Shift_Del p.V530* 0.48 TCGA-VS-A9UJ-01 5 61833073 61833073 T - IPO11 Frame_Shift_Del p.L777* 0.23 TCGA-VS-A9UJ-01 5 71501338 71501338 T C MAP1B 3'UTR 0.38 TCGA-VS-A9UJ-01 5 88018115 88018115 T C MEF2C 3'UTR 0.38 TCGA-VS-A9UJ-01 6 101109687 101109687 C G ASCC3 Missense_Mutation p.A900P 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 6 102503353 102503355 TGG - GRIK2 In_Frame_Del p.G822del 0.27 TCGA-VS-A9UJ-01 6 105528822 105528822 A - LIN28B 3'UTR 0.32 TCGA-VS-A9UJ-01 6 107392092 107392092 C A BEND3 Missense_Mutation p.Q101H 0.44 tolerated_low_confidence(0.07) benign(0.136) TCGA-VS-A9UJ-01 6 107954990 107954990 G T SOBP Silent p.P314P 0.46 TCGA-VS-A9UJ-01 6 114292107 114292107 C A HDAC2 5'UTR 0.26 TCGA-VS-A9UJ-01 6 116441643 116441643 C - COL10A1 Frame_Shift_Del p.V546* 0.20 TCGA-VS-A9UJ-01 6 117859954 117859954 G A DCBLD1 Missense_Mutation p.R311Q 0.08 tolerated(0.33) benign(0.417) TCGA-VS-A9UJ-01 6 118031074 118031074 T - NUS1 3'UTR 0.50 TCGA-VS-A9UJ-01 6 118881297 118881297 A G PLN 3'UTR 0.38 TCGA-VS-A9UJ-01 6 135359082 135359082 A G HBS1L Intron 0.11 TCGA-VS-A9UJ-01 6 135784283 135784284 - T AHI1 Frame_Shift_Ins p.T304Nfs*6 0.32 TCGA-VS-A9UJ-01 6 139165569 139165569 C - ECT2L Frame_Shift_Del p.P207Lfs*3 0.24 TCGA-VS-A9UJ-01 6 146120927 146120927 T - FBXO30 3'UTR 0.32 TCGA-VS-A9UJ-01 6 15246576 15246576 T - JARID2 5'UTR 0.33 TCGA-VS-A9UJ-01 6 152779986 152779986 G A SYNE1 Missense_Mutation p.T825M 0.23 benign(0.317) TCGA-VS-A9UJ-01 6 152784644 152784644 A - SYNE1 Frame_Shift_Del p.R648Efs*13 0.38 TCGA-VS-A9UJ-01 6 157505371 157505371 A - ARID1B Frame_Shift_Del p.N1119Tfs*11 0.37 TCGA-VS-A9UJ-01 6 158925001 158925001 C T TULP4 Missense_Mutation p.P1436S 0.33 deleterious_low_confidence(0.01) benign(0.138) TCGA-VS-A9UJ-01 6 159407401 159407401 C A RSPH3 Missense_Mutation p.R228M 0.34 deleterious(0) probably_damaging(0.979) TCGA-VS-A9UJ-01 6 159660853 159660853 G A FNDC1 Silent p.T1495T 0.36 TCGA-VS-A9UJ-01 6 161470537 161470537 C T MAP3K4 Silent p.G411G 0.48 TCGA-VS-A9UJ-01 6 163985687 163985687 T - QKI Intron 0.29 TCGA-VS-A9UJ-01 6 165806186 165806186 G A PDE10A Silent p.H535H 0.43 TCGA-VS-A9UJ-01 6 167416821 167416821 T - FGFR1OP Intron 0.53 TCGA-VS-A9UJ-01 6 26093121 26093121 G T HFE Silent p.G275G 0.24 TCGA-VS-A9UJ-01 6 27834679 27834693 GCTTTGGGCTTAGCG - HIST1H1B In_Frame_Del p.P213_K217del 0.25 TCGA-VS-A9UJ-01 6 32064790 32064790 G A TNXB Silent p.C280C 0.36 TCGA-VS-A9UJ-01 6 32944463 32944463 G A BRD2 Missense_Mutation p.R317H 0.50 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UJ-01 6 33288916 33288916 G C DAXX Silent p.L212L 0.44 TCGA-VS-A9UJ-01 6 33419606 33419606 G C SYNGAP1 Missense_Mutation p.A1319P 0.27 deleterious(0.02) benign(0.13) TCGA-VS-A9UJ-01 6 34204769 34204769 T - HMGA1 5'UTR 0.38 TCGA-VS-A9UJ-01 6 38690655 38690655 G A DNAH8 5'Flank 0.43 TCGA-VS-A9UJ-01 6 41566801 41566801 G A FOXP4 3'UTR 0.27 TCGA-VS-A9UJ-01 6 42231112 42231112 G - TRERF1 Frame_Shift_Del p.S611Pfs*104 0.27 TCGA-VS-A9UJ-01 6 45514749 45514749 C T RUNX2 Missense_Mutation p.P425S 0.35 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UJ-01 6 52869779 52869779 A - ICK 3'UTR 0.26 TCGA-VS-A9UJ-01 6 52998977 52998977 T C GCM1 Missense_Mutation p.K74R 0.45 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 6 55266626 55266626 C T GFRAL Missense_Mutation p.S387L 0.47 tolerated(0.09) benign(0) TCGA-VS-A9UJ-01 6 64290988 64290989 - T PTP4A1 3'UTR 0.57 TCGA-VS-A9UJ-01 6 87725487 87725487 C T HTR1E Silent p.T145T 0.23 TCGA-VS-A9UJ-01 6 89790660 89790660 G A PNRC1 Missense_Mutation p.G16D 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.559) TCGA-VS-A9UJ-01 7 100349947 100349947 C - ZAN Frame_Shift_Del p.T742Qfs*259 0.32 TCGA-VS-A9UJ-01 7 100732055 100732055 C A TRIM56 Missense_Mutation p.L488I 0.56 tolerated(0.07) benign(0.126) TCGA-VS-A9UJ-01 7 100771759 100771759 T C SERPINE1 Missense_Mutation p.S29P 0.56 tolerated(0.22) benign(0.01) TCGA-VS-A9UJ-01 7 101842129 101842129 C T CUX1 Nonsense_Mutation p.R659* 0.25 TCGA-VS-A9UJ-01 7 102988223 102988223 T C PSMC2 Missense_Mutation p.I22T 0.33 tolerated_low_confidence(0.12) benign(0.075) TCGA-VS-A9UJ-01 7 108205526 108205526 T - THAP5 Frame_Shift_Del p.K99Nfs*25 0.38 TCGA-VS-A9UJ-01 7 114282514 114282514 A G FOXP2 Silent p.G300G 0.26 TCGA-VS-A9UJ-01 7 12409831 12409832 - T VWDE Frame_Shift_Ins p.H701Tfs*6 0.33 TCGA-VS-A9UJ-01 7 127240323 127240323 G A FSCN3 Missense_Mutation p.C456Y 0.32 tolerated(0.57) benign(0.01) TCGA-VS-A9UJ-01 7 128852004 128852004 C - SMO Frame_Shift_Del p.P694Lfs*82 0.35 TCGA-VS-A9UJ-01 7 132523172 132523172 C A CHCHD3 Nonsense_Mutation p.E171* 0.28 TCGA-VS-A9UJ-01 7 134127419 134127419 A - AKR1B1 3'UTR 0.48 TCGA-VS-A9UJ-01 7 142605851 142605851 A G TRPV5 Silent p.S673S 0.39 TCGA-VS-A9UJ-01 7 149462529 149462529 A C ZNF467 Silent p.P354P 0.29 TCGA-VS-A9UJ-01 7 150746330 150746330 G A ASIC3 Missense_Mutation p.A120T 0.21 tolerated(0.53) benign(0.005) TCGA-VS-A9UJ-01 7 150835230 150835230 G A AGAP3 Missense_Mutation p.G499D 0.36 tolerated(0.15) possibly_damaging(0.876) TCGA-VS-A9UJ-01 7 151071208 151071208 A - NUB1 Frame_Shift_Del p.E451Rfs*13 0.35 TCGA-VS-A9UJ-01 7 151848004 151848004 G A KMT2C Missense_Mutation p.A4252V 0.33 benign(0.024) TCGA-VS-A9UJ-01 7 23651144 23651144 C T CCDC126 Silent p.V70V 0.26 TCGA-VS-A9UJ-01 7 2473525 2473525 T C CHST12 3'UTR 0.19 TCGA-VS-A9UJ-01 7 30199181 30199181 T C MTURN 3'UTR 0.19 TCGA-VS-A9UJ-01 7 31378471 31378471 G T NEUROD6 Missense_Mutation p.L138M 0.30 deleterious(0) probably_damaging(0.961) TCGA-VS-A9UJ-01 7 43906288 43906288 G A URGCP-MRPS24 3'UTR 0.35 TCGA-VS-A9UJ-01 7 5401259 5401259 G - TNRC18 Frame_Shift_Del p.R1543Afs*13 0.25 TCGA-VS-A9UJ-01 7 5410641 5410641 C - TNRC18 Frame_Shift_Del p.G1195Vfs*12 0.09 TCGA-VS-A9UJ-01 7 6786734 6786734 G T PMS2CL RNA 0.27 TCGA-VS-A9UJ-01 7 87825814 87825814 T A ADAM22 3'UTR 0.32 TCGA-VS-A9UJ-01 7 93067538 93067538 C T CALCR Missense_Mutation p.V317M 0.12 tolerated(0.12) benign(0.428) TCGA-VS-A9UJ-01 8 116680911 116680911 C - TRPS1 5'UTR 0.29 TCGA-VS-A9UJ-01 8 133186498 133186498 A - KCNQ3 Frame_Shift_Del p.F344Lfs*105 0.32 TCGA-VS-A9UJ-01 8 139616989 139616989 G T COL22A1 Silent p.V1376V 0.37 TCGA-VS-A9UJ-01 8 145139038 145139038 C T GPAA1 Silent p.G206G 0.27 TCGA-VS-A9UJ-01 8 1497408 1497408 G A DLGAP2 Silent p.A183A 0.43 TCGA-VS-A9UJ-01 8 18392442 18392442 G A PSD3 3'UTR 0.21 TCGA-VS-A9UJ-01 8 21965000 21965000 G C NUDT18 Silent p.G261G 0.55 TCGA-VS-A9UJ-01 8 22009472 22009472 T C LGI3 Missense_Mutation p.K179R 0.42 tolerated(0.1) benign(0.182) TCGA-VS-A9UJ-01 8 22105771 22105771 C T POLR3D Missense_Mutation p.R156C 0.28 deleterious(0.01) possibly_damaging(0.696) TCGA-VS-A9UJ-01 8 23177546 23177546 C T LOXL2 Missense_Mutation p.R441H 0.11 deleterious(0) probably_damaging(0.988) TCGA-VS-A9UJ-01 8 24772310 24772310 G A NEFM Missense_Mutation p.R335H 0.38 deleterious(0.04) unknown(0) TCGA-VS-A9UJ-01 8 26514822 26514822 C T DPYSL2 3'UTR 0.25 TCGA-VS-A9UJ-01 8 2876142 2876142 G - CSMD1 Frame_Shift_Del p.P2629Qfs*9 0.30 TCGA-VS-A9UJ-01 8 30038075 30038075 G A DCTN6 Missense_Mutation p.E135K 0.28 deleterious(0.03) benign(0.38) TCGA-VS-A9UJ-01 8 3057257 3057257 C T CSMD1 Missense_Mutation p.G1725S 0.43 probably_damaging(0.993) TCGA-VS-A9UJ-01 8 42587571 42587571 A - CHRNB3 Frame_Shift_Del p.K376Rfs*13 0.36 TCGA-VS-A9UJ-01 8 57074924 57074924 A - PLAG1 3'UTR 0.32 TCGA-VS-A9UJ-01 8 57076243 57076243 C T PLAG1 3'UTR 0.39 TCGA-VS-A9UJ-01 8 67476408 67476408 A - MYBL1 3'UTR 0.39 TCGA-VS-A9UJ-01 8 81431920 81431920 T A ZBTB10 3'UTR 0.27 TCGA-VS-A9UJ-01 8 87520724 87520724 G A RMDN1 Silent p.F42F 0.38 TCGA-VS-A9UJ-01 8 95183214 95183214 C A CDH17 Splice_Site p.X262_splice 0.31 TCGA-VS-A9UJ-01 8 97605755 97605755 C A SDC2 Silent p.S36S 0.33 TCGA-VS-A9UJ-01 8 98656864 98656864 C T MTDH Missense_Mutation p.P44S 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A9UJ-01 9 106864418 106864418 A - SMC2 Frame_Shift_Del p.I274* 0.30 TCGA-VS-A9UJ-01 9 117849359 117849359 G A TNC Silent p.S217S 0.30 TCGA-VS-A9UJ-01 9 121930222 121930222 T C BRINP1 Missense_Mutation p.S476G 0.67 tolerated(1) possibly_damaging(0.827) TCGA-VS-A9UJ-01 9 133495816 133495816 A G FUBP3 Missense_Mutation p.N248D 0.38 tolerated(0.08) benign(0) TCGA-VS-A9UJ-01 9 134314441 134314441 C T PRRC2B Silent p.H154H 0.35 TCGA-VS-A9UJ-01 9 134501511 134501511 C T RAPGEF1 Silent p.S501S 0.14 TCGA-VS-A9UJ-01 9 136898144 136898144 C T BRD3 3'UTR 0.53 TCGA-VS-A9UJ-01 9 138713217 138713217 C T CAMSAP1 Missense_Mutation p.R1097Q 0.42 tolerated(0.18) probably_damaging(0.924) TCGA-VS-A9UJ-01 9 139753703 139753703 C A MAMDC4 Missense_Mutation p.P1043T 0.32 tolerated(0.51) probably_damaging(0.999) TCGA-VS-A9UJ-01 9 140247180 140247180 T C EXD3 Missense_Mutation p.H310R 0.38 tolerated(0.14) benign(0.001) TCGA-VS-A9UJ-01 9 2181660 2181661 - T SMARCA2 Frame_Shift_Ins p.K1450Qfs*9 0.30 TCGA-VS-A9UJ-01 9 2181664 2181664 C A SMARCA2 Missense_Mutation p.F1449L 0.32 benign(0.032) TCGA-VS-A9UJ-01 9 21931108 21931108 T C RP11-145E5.5 Intron 0.38 TCGA-VS-A9UJ-01 9 2718665 2718665 G A KCNV2 Missense_Mutation p.C309Y 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-VS-A9UJ-01 9 6506697 6506697 T - UHRF2 3'UTR 0.34 TCGA-VS-A9UJ-01 9 77339566 77339566 G A TRPM6 Missense_Mutation p.T2011M 0.35 tolerated_low_confidence(0.16) benign(0.003) TCGA-VS-A9UJ-01 9 86590378 86590378 G T HNRNPK Missense_Mutation p.R86S 0.39 deleterious(0.02) benign(0.069) TCGA-VS-A9UJ-01 9 97382621 97382621 G T FBP1 Missense_Mutation p.P108Q 0.25 tolerated(0.21) benign(0.018) TCGA-VS-A9UJ-01 X 100296306 100296306 C T TRMT2B Silent p.K101K 0.32 TCGA-VS-A9UJ-01 X 117031800 117031800 A - KLHL13 3'UTR 0.30 TCGA-VS-A9UJ-01 X 130218246 130218246 A G ARHGAP36 Missense_Mutation p.T205A 0.32 tolerated(1) benign(0.001) TCGA-VS-A9UJ-01 X 135432577 135432577 G A GPR112 Missense_Mutation p.A2238T 0.12 tolerated(0.07) benign(0.131) TCGA-VS-A9UJ-01 X 135455169 135455169 G A GPR112 Silent p.T2574T 0.62 TCGA-VS-A9UJ-01 X 140993792 140993792 C A MAGEC1 Missense_Mutation p.P201H 0.06 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-VS-A9UJ-01 X 142718602 142718602 G T SLITRK4 Missense_Mutation p.A108E 0.29 tolerated(0.24) probably_damaging(0.994) TCGA-VS-A9UJ-01 X 146295000 146295000 G A MIR513A1 RNA 0.33 TCGA-VS-A9UJ-01 X 148584875 148584875 C T IDS Missense_Mutation p.V129M 0.42 tolerated(0.23) benign(0.039) TCGA-VS-A9UJ-01 X 154194956 154194956 A G F8 Missense_Mutation p.M339T 0.65 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UJ-01 X 17166934 17166934 G A REPS2 3'UTR 0.42 TCGA-VS-A9UJ-01 X 18622514 18622514 G A CDKL5 Silent p.G490G 0.27 TCGA-VS-A9UJ-01 X 19413266 19413266 G A MAP3K15 Silent p.I709I 0.35 TCGA-VS-A9UJ-01 X 37670388 37670388 T - CYBB 3'UTR 0.41 TCGA-VS-A9UJ-01 X 46322274 46322274 T C KRBOX4 Missense_Mutation p.V36A 0.39 deleterious(0) possibly_damaging(0.541) TCGA-VS-A9UJ-01 X 50052359 50052359 G A CCNB3 Missense_Mutation p.R397H 0.43 tolerated(0.87) benign(0.001) TCGA-VS-A9UJ-01 X 51239235 51239235 G A NUDT11 Missense_Mutation p.A21V 0.33 deleterious(0.02) possibly_damaging(0.888) TCGA-VS-A9UJ-01 X 54275531 54275531 G A WNK3 Missense_Mutation p.P1084S 0.14 tolerated(0.11) benign(0.019) TCGA-VS-A9UJ-01 X 55041341 55041342 - G ALAS2 Frame_Shift_Ins p.M426Hfs*66 0.26 TCGA-VS-A9UJ-01 X 62917165 62917165 C T ARHGEF9 Missense_Mutation p.R134Q 0.32 deleterious(0.05) benign(0.293) TCGA-VS-A9UJ-01 X 64722538 64722538 C T ZC3H12B Nonsense_Mutation p.Q654* 0.30 TCGA-VS-A9UJ-01 X 68382256 68382257 - A PJA1 Frame_Shift_Ins p.D276* 0.53 TCGA-VS-A9UJ-01 X 69595980 69595980 C T KIF4A Missense_Mutation p.R652C 0.32 deleterious(0) possibly_damaging(0.847) TCGA-VS-A9UJ-01 X 70387482 70387482 G T NLGN3 Missense_Mutation p.S512I 0.39 deleterious(0.01) possibly_damaging(0.833) TCGA-VS-A9UJ-01 X 70603840 70603840 G T TAF1 Missense_Mutation p.G679V 0.29 deleterious(0) probably_damaging(1) TCGA-VS-A9UJ-01 X 79277874 79277874 C T TBX22 Missense_Mutation p.R36W 0.32 deleterious(0.05) benign(0.224) TCGA-VS-A9UJ-01 X 86869510 86869510 G T KLHL4 Nonsense_Mutation p.E222* 0.34 TCGA-VS-A9UJ-01 X 89177530 89177530 G A TGIF2LX Missense_Mutation p.S149N 0.24 tolerated(0.48) benign(0.006) TCGA-VS-A9UL-01 10 11375363 11375363 G A CELF2 3'UTR 0.14 TCGA-VS-A9UL-01 10 122263376 122263376 G C PPAPDC1A Missense_Mutation p.E35Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UL-01 10 13341419 13341426 CCCGCTGT - PHYH Intron 0.22 TCGA-VS-A9UL-01 10 26310500 26310500 C T MYO3A Silent p.I218I 0.46 TCGA-VS-A9UL-01 10 28903536 28903536 C T WAC Missense_Mutation p.S493L 0.39 tolerated(0.1) benign(0.001) TCGA-VS-A9UL-01 10 35928241 35928241 C T FZD8 3'UTR 0.16 TCGA-VS-A9UL-01 10 52390575 52390575 G A RP11-50E11.3 RNA 0.67 TCGA-VS-A9UL-01 10 74700976 74700976 C T PLA2G12B Silent p.S139S 0.64 TCGA-VS-A9UL-01 10 77159857 77159857 A C ZNF503 Silent p.G197G 0.55 TCGA-VS-A9UL-01 10 7844309 7844309 C G ATP5C1 Missense_Mutation p.I238M 0.17 deleterious(0.02) probably_damaging(0.946) TCGA-VS-A9UL-01 10 99426832 99426832 C T PI4K2A Silent p.F381F 0.41 TCGA-VS-A9UL-01 11 20065657 20065657 C G NAV2 Missense_Mutation p.S1036C 0.35 deleterious(0.04) probably_damaging(0.998) TCGA-VS-A9UL-01 11 47437674 47437674 C G SLC39A13 3'UTR 0.23 TCGA-VS-A9UL-01 11 57585546 57585546 C T CTNND1 3'UTR 0.41 TCGA-VS-A9UL-01 11 62575011 62575011 C T STX5 Missense_Mutation p.R333Q 0.22 deleterious(0) probably_damaging(0.983) TCGA-VS-A9UL-01 11 63997035 63997035 G A NUDT22 Missense_Mutation p.E255K 0.21 tolerated(0.47) benign(0.002) TCGA-VS-A9UL-01 11 64525765 64525765 G A PYGM Missense_Mutation p.R161C 0.39 deleterious(0) probably_damaging(0.986) TCGA-VS-A9UL-01 11 66238754 66238754 G A PELI3 Missense_Mutation p.R89Q 0.26 tolerated(0.12) benign(0.411) TCGA-VS-A9UL-01 11 6742022 6742022 C T GVINP1 RNA 0.36 TCGA-VS-A9UL-01 11 82935967 82935967 G A ANKRD42 Silent p.T191T 0.60 TCGA-VS-A9UL-01 11 93456432 93456432 T C KIAA1731 Missense_Mutation p.I2058T 0.46 tolerated(0.27) possibly_damaging(0.571) TCGA-VS-A9UL-01 12 104681070 104681070 C G TXNRD1 Intron 0.15 TCGA-VS-A9UL-01 12 105514359 105514359 C A KIAA1033 Missense_Mutation p.T182N 0.25 tolerated(0.14) benign(0.004) TCGA-VS-A9UL-01 12 118457528 118457528 G A RFC5 Silent p.A74A 0.43 TCGA-VS-A9UL-01 12 133810752 133810752 G A ANHX Missense_Mutation p.A64V 0.26 tolerated(1) benign(0.003) TCGA-VS-A9UL-01 12 53664459 53664459 C G ESPL1 Intron 0.19 TCGA-VS-A9UL-01 12 54936426 54936426 G A NCKAP1L Missense_Mutation p.R1114Q 0.60 deleterious(0) probably_damaging(0.988) TCGA-VS-A9UL-01 12 56182865 56182865 G A SARNP Silent p.S165S 0.18 TCGA-VS-A9UL-01 12 64615970 64615970 C T C12orf66 Silent p.A16A 0.15 TCGA-VS-A9UL-01 12 93171414 93171414 C T EEA1 Missense_Mutation p.E1307K 0.23 deleterious(0.03) benign(0.011) TCGA-VS-A9UL-01 13 102359097 102359111 GCTTCACAGGCCACG - ITGBL1 Splice_Site p.X378_splice 0.23 TCGA-VS-A9UL-01 13 84455829 84455829 C T SLITRK1 5'UTR 0.25 TCGA-VS-A9UL-01 14 19969146 19969146 C G CTD-2311B13.7 RNA 0.39 TCGA-VS-A9UL-01 14 22466366 22466366 C T TRAV17 Missense_Mutation p.S99F 0.11 deleterious(0) possibly_damaging(0.847) TCGA-VS-A9UL-01 14 23846509 23846509 G T CMTM5 Missense_Mutation p.V17F 0.62 deleterious(0.01) benign(0.269) TCGA-VS-A9UL-01 14 50195715 50195715 C T KLHDC1 Silent p.G213G 0.06 TCGA-VS-A9UL-01 14 58730443 58730443 C T PSMA3 Silent p.I166I 0.47 TCGA-VS-A9UL-01 14 58925215 58925215 C T KIAA0586 Silent p.I589I 0.33 TCGA-VS-A9UL-01 14 64518777 64518777 T A SYNE2 Missense_Mutation p.L2716M 0.69 possibly_damaging(0.812) TCGA-VS-A9UL-01 14 69262548 69262548 G A ZFP36L1 5'Flank 0.49 TCGA-VS-A9UL-01 14 78189563 78189563 T G SNW1 Missense_Mutation p.Q364P 0.27 deleterious(0.03) benign(0.303) TCGA-VS-A9UL-01 15 22743064 22743064 G A GOLGA6L1 Silent p.K483K 0.13 TCGA-VS-A9UL-01 15 52521450 52521450 C T MYO5C Silent p.L1029L 0.11 TCGA-VS-A9UL-01 15 67074032 67074032 A G SMAD6 3'UTR 0.38 TCGA-VS-A9UL-01 15 77425453 77425453 C G PEAK1 Missense_Mutation p.W1324S 0.08 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UL-01 15 77907099 77907099 G A LINGO1 Missense_Mutation p.R384C 0.35 deleterious(0) probably_damaging(0.988) TCGA-VS-A9UL-01 15 78805584 78805584 G A HYKK Missense_Mutation p.V52I 0.11 tolerated(0.5) benign(0.009) TCGA-VS-A9UL-01 15 80181461 80181461 T A ST20-MTHFS Missense_Mutation p.D94V 0.12 deleterious(0) possibly_damaging(0.872) TCGA-VS-A9UL-01 15 80181504 80181504 G C ST20-MTHFS Missense_Mutation p.L80V 0.11 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UL-01 15 91459400 91459400 C T MAN2A2 Missense_Mutation p.R970W 0.14 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UL-01 15 92459489 92459489 C G SLCO3A1 Silent p.V149V 0.16 TCGA-VS-A9UL-01 16 19883588 19883588 C A GPRC5B Missense_Mutation p.A194S 0.07 tolerated(0.7) benign(0.071) TCGA-VS-A9UL-01 16 20975334 20975334 C T DNAH3 Missense_Mutation p.R3291Q 0.17 deleterious(0) probably_damaging(1) TCGA-VS-A9UL-01 16 29934624 29934624 G A KCTD13 Missense_Mutation p.R101W 0.36 deleterious(0) probably_damaging(1) TCGA-VS-A9UL-01 16 30975601 30975601 C T SETD1A Missense_Mutation p.R276W 0.32 probably_damaging(0.928) TCGA-VS-A9UL-01 16 449391 449391 G A NME4 Missense_Mutation p.V80I 0.48 tolerated(0.39) benign(0.001) TCGA-VS-A9UL-01 16 67268369 67268369 C T FHOD1 Silent p.R442R 0.14 TCGA-VS-A9UL-01 16 72110761 72110761 G A HPR Silent p.L276L 0.04 TCGA-VS-A9UL-01 17 10728777 10728777 G A PIRT Silent p.G62G 0.11 TCGA-VS-A9UL-01 17 1580384 1580384 C T PRPF8 Silent p.V689V 0.13 TCGA-VS-A9UL-01 17 1675163 1675163 C T SERPINF1 Intron 0.25 TCGA-VS-A9UL-01 17 27044323 27044323 G C RAB34 Intron 0.36 TCGA-VS-A9UL-01 17 27591423 27591423 T A NUFIP2 3'UTR 0.05 TCGA-VS-A9UL-01 17 45471442 45471442 C T EFCAB13 Missense_Mutation p.T593M 0.14 tolerated(0.08) probably_damaging(0.909) TCGA-VS-A9UL-01 17 53045701 53045701 C A COX11 Missense_Mutation p.A103S 0.20 tolerated(0.1) possibly_damaging(0.458) TCGA-VS-A9UL-01 17 57917466 57917466 C T VMP1 3'UTR 0.44 TCGA-VS-A9UL-01 17 61781447 61781447 G A STRADA Intron 0.14 TCGA-VS-A9UL-01 17 65689566 65689566 G A PITPNC1 3'Flank 0.23 TCGA-VS-A9UL-01 17 72926490 72926490 G A OTOP2 Missense_Mutation p.A254T 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-VS-A9UL-01 17 78195370 78195370 C T SLC26A11 Missense_Mutation p.S4L 0.27 deleterious_low_confidence(0.01) benign(0.081) TCGA-VS-A9UL-01 17 78398850 78398850 C T ENDOV Nonsense_Mutation p.R179* 0.27 TCGA-VS-A9UL-01 17 79422318 79422318 C T RP11-1055B8.7 Silent p.L1491L 0.61 TCGA-VS-A9UL-01 17 80560685 80560685 G A FOXK2 3'UTR 0.14 TCGA-VS-A9UL-01 18 13646253 13646253 G C LDLRAD4 3'UTR 0.53 TCGA-VS-A9UL-01 18 56202978 56202978 G A ALPK2 Nonsense_Mutation p.Q1481* 0.46 TCGA-VS-A9UL-01 19 17799013 17799013 C T UNC13A 5'Flank 0.40 TCGA-VS-A9UL-01 19 20308936 20308936 T - ZNF486 3'UTR 0.14 TCGA-VS-A9UL-01 19 22783041 22783041 C T AC011467.1 5'Flank 0.24 TCGA-VS-A9UL-01 19 29698956 29698956 C A UQCRFS1 Missense_Mutation p.E108D 0.13 tolerated(0.74) benign(0.002) TCGA-VS-A9UL-01 19 34895320 34895320 T C PDCD2L 5'UTR 0.40 TCGA-VS-A9UL-01 19 38315191 38315191 A T AC016582.2 RNA 0.43 TCGA-VS-A9UL-01 19 39208711 39208711 G A ACTN4 Missense_Mutation p.D430N 0.16 tolerated(0.57) benign(0.003) TCGA-VS-A9UL-01 19 45716518 45716518 C T EXOC3L2 Missense_Mutation p.E347K 0.15 deleterious(0.04) benign(0.159) TCGA-VS-A9UL-01 19 49793804 49793804 G A SLC6A16 Intron 0.15 TCGA-VS-A9UL-01 19 53209778 53209778 C G ZNF611 Missense_Mutation p.G177A 0.25 tolerated(0.5) benign(0.002) TCGA-VS-A9UL-01 19 54678094 54678094 A C MBOAT7 Missense_Mutation p.W355G 0.16 deleterious(0.01) probably_damaging(1) TCGA-VS-A9UL-01 19 54682531 54682531 G A MBOAT7 Silent p.L328L 0.14 TCGA-VS-A9UL-01 19 57286403 57286403 C T ZIM2 Missense_Mutation p.E413K 0.17 tolerated(0.14) probably_damaging(0.963) TCGA-VS-A9UL-01 19 6183211 6183211 G A ACSBG2 Missense_Mutation p.G417D 0.22 tolerated(0.16) possibly_damaging(0.826) TCGA-VS-A9UL-01 1 102270088 102270088 C T OLFM3 Silent p.V361V 0.37 TCGA-VS-A9UL-01 1 109793344 109793344 C T CELSR2 Nonsense_Mutation p.R215* 0.18 TCGA-VS-A9UL-01 1 152287004 152287004 C T FLG Missense_Mutation p.E120K 0.21 benign(0.159) TCGA-VS-A9UL-01 1 152325364 152325364 G C FLG2 Missense_Mutation p.S1633C 0.71 possibly_damaging(0.612) TCGA-VS-A9UL-01 1 158641935 158641935 G A SPTA1 Missense_Mutation p.R468C 0.23 deleterious(0.03) benign(0.072) TCGA-VS-A9UL-01 1 159796653 159796653 G T SLAMF8 5'UTR 0.14 TCGA-VS-A9UL-01 1 16054318 16054318 C T PLEKHM2 Missense_Mutation p.S584L 0.75 deleterious(0.01) benign(0.2) TCGA-VS-A9UL-01 1 16264318 16264318 C T SPEN Silent p.I3507I 0.43 TCGA-VS-A9UL-01 1 207642169 207642169 G A CR2 Missense_Mutation p.R220Q 0.31 tolerated(0.98) benign(0.004) TCGA-VS-A9UL-01 1 222805540 222805540 G A MIA3 Missense_Mutation p.R1068Q 0.47 tolerated(1) benign(0) TCGA-VS-A9UL-01 1 225305594 225305594 G A DNAH14 Silent p.V406V 0.20 TCGA-VS-A9UL-01 1 31212661 31212661 G A LAPTM5 Missense_Mutation p.R128C 0.29 tolerated(0.07) possibly_damaging(0.863) TCGA-VS-A9UL-01 1 32706159 32706159 C A MTMR9LP RNA 0.23 TCGA-VS-A9UL-01 1 38269629 38269629 C T YRDC Missense_Mutation p.G270R 0.18 tolerated(0.18) benign(0.006) TCGA-VS-A9UL-01 1 5964843 5964843 T C NPHP4 Silent p.G659G 0.18 TCGA-VS-A9UL-01 1 914765 914765 G A C1orf170 Missense_Mutation p.R455W 0.20 deleterious(0) possibly_damaging(0.649) TCGA-VS-A9UL-01 20 1532406 1532406 C G SIRPD Missense_Mutation p.V118L 0.18 deleterious(0.01) possibly_damaging(0.73) TCGA-VS-A9UL-01 20 1918266 1918266 C A SIRPA 3'UTR 0.10 TCGA-VS-A9UL-01 20 31389226 31389226 C T DNMT3B Silent p.F713F 0.29 TCGA-VS-A9UL-01 20 3212128 3212128 G A SLC4A11 Missense_Mutation p.R309C 0.42 deleterious(0) probably_damaging(0.912) TCGA-VS-A9UL-01 20 49458300 49458300 C T BCAS4 Intron 0.81 TCGA-VS-A9UL-01 20 49509855 49509855 C T ADNP Missense_Mutation p.E466K 0.33 deleterious(0) possibly_damaging(0.589) TCGA-VS-A9UL-01 21 10921956 10921956 G A TPTE Missense_Mutation p.S356F 0.07 deleterious(0) benign(0.114) TCGA-VS-A9UL-01 21 34932218 34932218 G A SON Intron 0.56 TCGA-VS-A9UL-01 21 37618929 37618929 G A DOPEY2 Missense_Mutation p.D1551N 0.41 tolerated(0.6) benign(0.187) TCGA-VS-A9UL-01 21 38604760 38604760 G A DSCR3 Intron 0.23 TCGA-VS-A9UL-01 21 38865437 38865437 G T DYRK1A Missense_Mutation p.G357V 0.22 deleterious(0) probably_damaging(1) TCGA-VS-A9UL-01 21 40568714 40568714 C T BRWD1 Missense_Mutation p.R2094H 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.813) TCGA-VS-A9UL-01 22 19776231 19776231 G A GNB1L 3'UTR 0.35 TCGA-VS-A9UL-01 22 37325485 37325485 C A CSF2RB Missense_Mutation p.Q145K 0.26 tolerated(0.1) benign(0.015) TCGA-VS-A9UL-01 22 41566521 41566521 G C EP300 Missense_Mutation p.W1466C 0.35 probably_damaging(1) TCGA-VS-A9UL-01 22 45961099 45961099 C T FBLN1 Intron 0.38 TCGA-VS-A9UL-01 22 50636574 50636574 G A TRABD Silent p.E305E 0.29 TCGA-VS-A9UL-01 2 132021238 132021238 G A POTEE Missense_Mutation p.R737H 0.48 tolerated_low_confidence(0.5) benign(0.029) TCGA-VS-A9UL-01 2 157368754 157368754 T A GPD2 Missense_Mutation p.L141H 0.10 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UL-01 2 179515983 179515983 G A TTN Silent p.V13204V 0.44 TCGA-VS-A9UL-01 2 201436885 201436885 G A SGOL2 Missense_Mutation p.E606K 0.13 tolerated(0.06) possibly_damaging(0.46) TCGA-VS-A9UL-01 2 213914464 213914464 G C IKZF2 Missense_Mutation p.L183V 0.15 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UL-01 2 220099618 220099618 G A ANKZF1 Silent p.L425L 0.31 TCGA-VS-A9UL-01 2 224822285 224822285 G C MRPL44 Missense_Mutation p.K32N 0.53 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UL-01 2 228882998 228882998 C T SPHKAP Missense_Mutation p.E858K 0.16 tolerated(0.09) benign(0.217) TCGA-VS-A9UL-01 2 230135754 230135754 C T PID1 5'UTR 0.33 TCGA-VS-A9UL-01 2 231191918 231191918 C T SP140L 5'UTR 0.33 TCGA-VS-A9UL-01 2 28531263 28531263 C A BRE Intron 0.22 TCGA-VS-A9UL-01 2 42720387 42720387 G A KCNG3 Silent p.F85F 0.20 TCGA-VS-A9UL-01 2 69573059 69573059 C T GFPT1 Missense_Mutation p.R361K 0.06 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UL-01 2 74326502 74326502 G C TET3 Missense_Mutation p.E988Q 0.44 deleterious(0) probably_damaging(1) TCGA-VS-A9UL-01 2 87072074 87072074 C T CD8B Silent p.R197R 0.15 TCGA-VS-A9UL-01 2 90060840 90060840 C T IGKV6D-21 Missense_Mutation p.P63S 0.15 deleterious(0) probably_damaging(0.918) TCGA-VS-A9UL-01 2 90198766 90198766 C T IGKV1D-12 Silent p.F17F 0.27 TCGA-VS-A9UL-01 3 114070420 114070420 C T ZBTB20 Missense_Mutation p.E169K 0.33 deleterious(0) probably_damaging(0.973) TCGA-VS-A9UL-01 3 133376683 133376683 C G TOPBP1 Missense_Mutation p.D108H 0.26 deleterious(0) probably_damaging(0.925) TCGA-VS-A9UL-01 3 133474320 133474320 G A TF Missense_Mutation p.G206S 0.35 deleterious(0.03) probably_damaging(0.915) TCGA-VS-A9UL-01 3 141162243 141162243 C T ZBTB38 Missense_Mutation p.P338L 0.40 deleterious(0.03) benign(0.342) TCGA-VS-A9UL-01 3 142503543 142503543 C T TRPC1 Intron 0.21 TCGA-VS-A9UL-01 3 157261172 157261172 G C C3orf55 5'Flank 0.39 TCGA-VS-A9UL-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.42 deleterious(0.04) probably_damaging(0.96) TCGA-VS-A9UL-01 3 179082187 179082187 G C MFN1 Missense_Mutation p.M213I 0.07 deleterious(0.02) benign(0.033) TCGA-VS-A9UL-01 3 179615944 179615944 T A PEX5L Missense_Mutation p.T62S 0.09 tolerated_low_confidence(0.1) unknown(0) TCGA-VS-A9UL-01 3 186980337 186980337 C T MASP1 Missense_Mutation p.A137T 0.17 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UL-01 3 195800840 195800840 G A TFRC Missense_Mutation p.S132L 0.16 deleterious(0.02) benign(0.016) TCGA-VS-A9UL-01 3 195974252 195974253 - GAACTCGGGTGTCAGCGTC PCYT1A Frame_Shift_Ins p.L158Dfs*13 0.13 TCGA-VS-A9UL-01 3 38049998 38049998 C T PLCD1 Missense_Mutation p.R639H 0.27 tolerated(0.08) benign(0.007) TCGA-VS-A9UL-01 3 69987137 69987137 G A MITF Silent p.P173P 0.19 TCGA-VS-A9UL-01 4 68699018 68699018 G A TMPRSS11D Missense_Mutation p.P199L 0.24 deleterious(0) probably_damaging(1) TCGA-VS-A9UL-01 4 74719555 74719555 G C PF4V1 Missense_Mutation p.Q52H 0.29 deleterious(0.04) possibly_damaging(0.905) TCGA-VS-A9UL-01 4 79350252 79350252 C T FRAS1 Missense_Mutation p.S1572L 0.38 possibly_damaging(0.707) TCGA-VS-A9UL-01 5 140870977 140870977 G A PCDHGC5 Missense_Mutation p.D724N 0.16 tolerated(0.55) benign(0) TCGA-VS-A9UL-01 5 145719268 145719268 C A POU4F3 Missense_Mutation p.S93Y 0.20 deleterious(0) benign(0.275) TCGA-VS-A9UL-01 5 146435304 146435304 C T PPP2R2B Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0.03) benign(0.005) TCGA-VS-A9UL-01 5 150029731 150029731 C T SYNPO Silent p.L876L 0.31 TCGA-VS-A9UL-01 5 150722462 150722462 C T SLC36A2 Missense_Mutation p.A143T 0.40 deleterious(0.01) possibly_damaging(0.612) TCGA-VS-A9UL-01 5 180276891 180276891 C T ZFP62 Missense_Mutation p.C535Y 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A9UL-01 5 19721471 19721471 C T CDH18 Missense_Mutation p.V210I 0.58 tolerated(0.1) probably_damaging(0.963) TCGA-VS-A9UL-01 5 41149524 41149524 G A C6 Silent p.P814P 0.09 TCGA-VS-A9UL-01 5 45261264 45261264 T C HCN1 3'UTR 0.47 TCGA-VS-A9UL-01 5 45262896 45262896 A G HCN1 Silent p.I600I 0.08 TCGA-VS-A9UL-01 5 77590312 77590312 G A AP3B1 Missense_Mutation p.S31L 0.24 deleterious(0.01) benign(0.005) TCGA-VS-A9UL-01 6 138752856 138752856 T C NHSL1 Missense_Mutation p.N880D 0.60 deleterious(0.03) possibly_damaging(0.641) TCGA-VS-A9UL-01 6 27420303 27420303 C G ZNF184 Missense_Mutation p.Q345H 0.09 tolerated(0.21) benign(0.233) TCGA-VS-A9UL-01 6 42832861 42832861 C T GLTSCR1L Nonsense_Mutation p.Q973* 0.09 TCGA-VS-A9UL-01 6 43017313 43017313 C T CUL7 Missense_Mutation p.D637N 0.35 deleterious(0.04) possibly_damaging(0.601) TCGA-VS-A9UL-01 6 43255936 43255936 G T TTBK1 3'UTR 0.17 TCGA-VS-A9UL-01 6 7583193 7583193 G A DSP Missense_Mutation p.E1900K 0.14 probably_damaging(0.991) TCGA-VS-A9UL-01 7 100608533 100608533 G A MUC3A Intron 0.18 TCGA-VS-A9UL-01 7 105098167 105098167 G C PUS7 3'UTR 0.15 TCGA-VS-A9UL-01 7 107790203 107790203 G C NRCAM 3'UTR 0.13 TCGA-VS-A9UL-01 7 11082404 11082404 C T PHF14 Missense_Mutation p.L759F 0.12 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UL-01 7 128356904 128356904 C T FAM71F1 Missense_Mutation p.A96V 0.17 tolerated(0.39) benign(0.018) TCGA-VS-A9UL-01 7 137559947 137559947 C T CREB3L2 3'UTR 0.18 TCGA-VS-A9UL-01 7 143453972 143453972 A G CTAGE6 Silent p.N260N 0.19 TCGA-VS-A9UL-01 7 152551780 152551780 G A ACTR3B 3'UTR 0.42 TCGA-VS-A9UL-01 7 22478093 22478093 C T STEAP1B 3'UTR 0.19 TCGA-VS-A9UL-01 7 48319420 48319420 C T ABCA13 Missense_Mutation p.P2877S 0.19 benign(0.026) TCGA-VS-A9UL-01 7 76019496 76019496 G A SRCRB4D Silent p.L536L 0.47 TCGA-VS-A9UL-01 7 77408705 77408705 T A RSBN1L 3'UTR 0.05 TCGA-VS-A9UL-01 7 87835634 87835634 T C SRI 3'UTR 0.24 TCGA-VS-A9UL-01 7 95157366 95157366 C T ASB4 Silent p.A243A 0.40 TCGA-VS-A9UL-01 8 11995085 11995085 G A USP17L2 Silent p.G395G 0.07 TCGA-VS-A9UL-01 8 128428376 128428376 G A POU5F1B Missense_Mutation p.G89S 0.42 tolerated(0.23) benign(0.021) TCGA-VS-A9UL-01 8 145101699 145101699 G A SPATC1 Missense_Mutation p.E540K 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-VS-A9UL-01 8 1951680 1951680 G A KBTBD11 3'UTR 0.22 TCGA-VS-A9UL-01 8 2041840 2041840 C T MYOM2 Nonsense_Mutation p.R683* 0.32 TCGA-VS-A9UL-01 8 70667685 70667685 G A SLCO5A1 Missense_Mutation p.S411L 0.15 deleterious(0.04) benign(0.009) TCGA-VS-A9UL-01 8 95186450 95186450 C T CDH17 Missense_Mutation p.D155N 0.23 deleterious(0) probably_damaging(1) TCGA-VS-A9UL-01 8 95718947 95718947 G A ESRP1 3'UTR 0.21 TCGA-VS-A9UL-01 9 116308 116308 G A FOXD4 3'UTR 0.20 TCGA-VS-A9UL-01 9 119903607 119903607 C T ASTN2 Intron 0.26 TCGA-VS-A9UL-01 9 123907593 123907593 G A CNTRL Silent p.L1080L 0.72 TCGA-VS-A9UL-01 9 127962849 127962849 C T RABEPK 5'Flank 0.36 TCGA-VS-A9UL-01 9 130871290 130871290 C T SLC25A25 3'UTR 0.50 TCGA-VS-A9UL-01 9 133569166 133569166 C A EXOSC2 5'UTR 0.15 TCGA-VS-A9UL-01 X 100503083 100503083 C T DRP2 Silent p.L420L 0.12 TCGA-VS-A9UL-01 X 101912007 101912007 C A GPRASP1 Missense_Mutation p.P1056T 0.12 deleterious(0.02) possibly_damaging(0.766) TCGA-VS-A9UL-01 X 111020156 111020156 G A TRPC5 Silent p.S769S 0.50 TCGA-VS-A9UL-01 X 112048177 112048177 C A AMOT Nonsense_Mutation p.E592* 0.14 TCGA-VS-A9UL-01 X 132352215 132352215 G A TFDP3 Missense_Mutation p.R25C 0.54 deleterious_low_confidence(0) benign(0.001) TCGA-VS-A9UL-01 X 149924311 149924311 C T MTMR1 Nonsense_Mutation p.R603* 0.38 TCGA-VS-A9UL-01 X 150912184 150912184 G A CNGA2 Silent p.K403K 0.14 TCGA-VS-A9UL-01 X 153184447 153184447 C T ARHGAP4 Missense_Mutation p.E331K 0.61 deleterious(0.02) probably_damaging(0.961) TCGA-VS-A9UL-01 X 3239452 3239452 G A MXRA5 Missense_Mutation p.S1425F 0.23 deleterious(0.02) benign(0.401) TCGA-VS-A9UL-01 X 49045538 49045538 C T SYP 3'UTR 0.18 TCGA-VS-A9UL-01 X 49862624 49862624 G A CLCN5 3'UTR 0.33 TCGA-VS-A9UL-01 X 90691973 90691973 C A PABPC5 3'UTR 0.46 TCGA-VS-A9UL-01 X 90692742 90692742 C T PABPC5 3'UTR 0.45 TCGA-VS-A9UL-01 X 91874055 91874055 G A PCDH11X 3'UTR 0.24 TCGA-VS-A9UL-01 X 96140003 96140003 G A RPA4 Missense_Mutation p.V232I 0.24 tolerated(0.66) benign(0) TCGA-VS-A9UL-01 X 9900450 9900450 G T SHROOM2 Missense_Mutation p.A1043S 0.19 tolerated(0.52) benign(0.005) TCGA-VS-A9UM-01 10 1089579 1089579 C G IDI1 Intron 0.42 TCGA-VS-A9UM-01 10 115486071 115486071 G A CASP7 Missense_Mutation p.R220Q 0.45 tolerated(0.12) benign(0.081) TCGA-VS-A9UM-01 10 115963932 115963932 G C TDRD1 Missense_Mutation p.R361T 0.11 tolerated(0.12) probably_damaging(0.943) TCGA-VS-A9UM-01 10 129910310 129910310 C G MKI67 Splice_Site p.X657_splice 0.07 TCGA-VS-A9UM-01 10 131676052 131676052 G A EBF3 Nonsense_Mutation p.R206* 0.30 TCGA-VS-A9UM-01 10 15183420 15183420 C G NMT2 Splice_Site p.X82_splice 0.09 TCGA-VS-A9UM-01 10 28284009 28284009 G C ARMC4 Silent p.L21L 0.35 TCGA-VS-A9UM-01 10 61831955 61831959 TTCTT - ANK3 Frame_Shift_Del p.K2894* 0.14 TCGA-VS-A9UM-01 11 10515022 10515022 C T AMPD3 Missense_Mutation p.R365W 0.10 deleterious(0) possibly_damaging(0.729) TCGA-VS-A9UM-01 11 10822553 10822553 G C EIF4G2 Missense_Mutation p.P499A 0.07 tolerated(0.15) benign(0.006) TCGA-VS-A9UM-01 11 118984351 118984351 A T C2CD2L Missense_Mutation p.E473V 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-VS-A9UM-01 11 13441245 13441245 G C BTBD10 Missense_Mutation p.Q116E 0.33 tolerated_low_confidence(0.23) benign(0.09) TCGA-VS-A9UM-01 11 35440536 35440536 C A SLC1A2 5'UTR 0.05 TCGA-VS-A9UM-01 11 64365996 64366015 CAGAGTCGGCACGATGGCTC - SLC22A12 Frame_Shift_Del p.E281Hfs*31 0.25 TCGA-VS-A9UM-01 12 107048099 107048099 C T RFX4 Silent p.T104T 0.36 TCGA-VS-A9UM-01 12 120650111 120650111 G A PXN 3'UTR 0.32 TCGA-VS-A9UM-01 12 123213929 123213929 G C HCAR1 Missense_Mutation p.R320G 0.09 tolerated(0.41) benign(0.001) TCGA-VS-A9UM-01 12 130963502 130963502 C T RIMBP2 Silent p.L19L 0.10 TCGA-VS-A9UM-01 12 133240996 133240996 T C POLE Missense_Mutation p.N841D 0.31 tolerated(0.06) benign(0.208) TCGA-VS-A9UM-01 12 14940401 14940401 G T WBP11 Silent p.R508R 0.34 TCGA-VS-A9UM-01 13 25367255 25367255 C T RNF17 Silent p.Y337Y 0.48 TCGA-VS-A9UM-01 13 36245448 36245448 G T NBEA 3'UTR 0.24 TCGA-VS-A9UM-01 14 34243723 34243723 T G NPAS3 Missense_Mutation p.Y345D 0.38 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UM-01 14 74428496 74428496 C G COQ6 Missense_Mutation p.L423V 0.37 tolerated(0.72) benign(0.206) TCGA-VS-A9UM-01 14 77709351 77709351 G A TMEM63C Missense_Mutation p.M431I 0.38 tolerated(1) benign(0.004) TCGA-VS-A9UM-01 16 10868933 10868933 A - TVP23A Frame_Shift_Del p.F37Sfs*7 0.08 TCGA-VS-A9UM-01 16 30456428 30456428 C G SEPHS2 Silent p.G207G 0.56 TCGA-VS-A9UM-01 16 47727354 47727354 G A PHKB Missense_Mutation p.R944Q 0.47 tolerated(0.21) benign(0.27) TCGA-VS-A9UM-01 16 71964021 71964021 A G IST1 3'Flank 0.05 TCGA-VS-A9UM-01 16 88718992 88718992 G A MVD Silent p.L382L 0.35 TCGA-VS-A9UM-01 16 89334221 89334221 T A ANKRD11 3'UTR 0.28 TCGA-VS-A9UM-01 17 11511590 11511590 C A DNAH9 Missense_Mutation p.L188I 0.41 benign(0.081) TCGA-VS-A9UM-01 17 32961854 32961854 G C TMEM132E Missense_Mutation p.E485D 0.33 tolerated(0.54) benign(0.021) TCGA-VS-A9UM-01 17 77807134 77807134 A G CBX4 3'UTR 0.11 TCGA-VS-A9UM-01 18 22048879 22048879 C T HRH4 Silent p.L107L 0.38 TCGA-VS-A9UM-01 18 43205655 43205655 G A SLC14A2 Missense_Mutation p.R53Q 0.41 tolerated(0.09) benign(0.01) TCGA-VS-A9UM-01 19 11529344 11529344 C T RGL3 Intron 0.46 TCGA-VS-A9UM-01 19 17922906 17922906 G C B3GNT3 Missense_Mutation p.C365S 0.29 deleterious(0) probably_damaging(0.972) TCGA-VS-A9UM-01 19 36211789 36211789 G T KMT2B Missense_Mutation p.A514S 0.27 benign(0.05) TCGA-VS-A9UM-01 19 39804594 39804594 G A LRFN1 Silent p.S461S 0.38 TCGA-VS-A9UM-01 19 53994530 53994530 T A ZNF813 Silent p.L348L 0.05 TCGA-VS-A9UM-01 19 5455850 5455850 G A ZNRF4 Silent p.L116L 0.41 TCGA-VS-A9UM-01 19 56614269 56614269 T A ZNF787 Intron 0.05 TCGA-VS-A9UM-01 1 10197201 10197201 C G UBE4B Silent p.L767L 0.27 TCGA-VS-A9UM-01 1 113460551 113460560 ACAGAGGAAC - SLC16A1 Frame_Shift_Del p.F157Lfs*20 0.22 TCGA-VS-A9UM-01 1 118167264 118167264 A G FAM46C 3'UTR 0.36 TCGA-VS-A9UM-01 1 142714037 142714037 C T RP11-417J8.6 RNA 0.08 TCGA-VS-A9UM-01 1 155147914 155147914 T A TRIM46 Missense_Mutation p.M39K 0.07 deleterious(0) possibly_damaging(0.883) TCGA-VS-A9UM-01 1 201970613 201970613 C G RNPEP Silent p.L438L 0.56 TCGA-VS-A9UM-01 1 209800752 209800752 G A LAMB3 Silent p.N487N 0.30 TCGA-VS-A9UM-01 1 23645110 23645110 C T HNRNPR Missense_Mutation p.E298K 0.27 deleterious(0) probably_damaging(0.95) TCGA-VS-A9UM-01 1 24413198 24413198 C T MYOM3 Missense_Mutation p.M578I 0.21 tolerated(0.23) benign(0.002) TCGA-VS-A9UM-01 1 42047079 42047079 C G HIVEP3 Missense_Mutation p.Q1130H 0.06 possibly_damaging(0.838) TCGA-VS-A9UM-01 1 44088568 44088569 - A PTPRF 3'UTR 0.17 TCGA-VS-A9UM-01 1 762575 762575 G A LINC00115 RNA 0.14 TCGA-VS-A9UM-01 1 7812556 7812556 C T CAMTA1 Nonsense_Mutation p.R1641* 0.30 TCGA-VS-A9UM-01 20 18374965 18374965 G A DZANK1 Silent p.F547F 0.58 TCGA-VS-A9UM-01 20 30782426 30782426 G C PLAGL2 3'UTR 0.22 TCGA-VS-A9UM-01 20 30782735 30782735 G C PLAGL2 3'UTR 0.15 TCGA-VS-A9UM-01 20 30782804 30782804 G T PLAGL2 3'UTR 0.24 TCGA-VS-A9UM-01 20 30783647 30783647 G A PLAGL2 3'UTR 0.16 TCGA-VS-A9UM-01 20 34317420 34317420 C T RBM39 Missense_Mutation p.R109Q 0.26 tolerated(0.2) benign(0.105) TCGA-VS-A9UM-01 20 40112130 40112130 G A CHD6 Nonsense_Mutation p.R763* 0.61 TCGA-VS-A9UM-01 20 47734614 47734614 G A STAU1 Silent p.F403F 0.36 TCGA-VS-A9UM-01 20 60504799 60504799 G C CDH4 Missense_Mutation p.C713S 0.10 deleterious(0.02) possibly_damaging(0.725) TCGA-VS-A9UM-01 22 21055610 21055610 T A TMEM191A RNA 0.07 TCGA-VS-A9UM-01 22 23466628 23466628 C A RTDR1 Intron 0.43 TCGA-VS-A9UM-01 22 46795712 46795712 C T CELSR1 Missense_Mutation p.G1772R 0.32 deleterious(0) probably_damaging(1) TCGA-VS-A9UM-01 22 50280322 50280322 C A ZBED4 Missense_Mutation p.F1004L 0.10 tolerated(1) benign(0.002) TCGA-VS-A9UM-01 2 160706598 160706598 G A LY75-CD302 Missense_Mutation p.R1015C 0.33 deleterious(0) probably_damaging(0.988) TCGA-VS-A9UM-01 2 162273338 162273338 C T TBR1 Silent p.I139I 0.31 TCGA-VS-A9UM-01 2 179475819 179475819 C T TTN Missense_Mutation p.E17013K 0.16 TCGA-VS-A9UM-01 2 1795615 1795615 G A MYT1L 3'UTR 0.34 TCGA-VS-A9UM-01 2 179571645 179571645 G A TTN Missense_Mutation p.A9693V 0.24 TCGA-VS-A9UM-01 2 203329530 203329530 A T BMPR2 Splice_Site p.X26_splice 0.21 TCGA-VS-A9UM-01 2 210880820 210880820 G A RPE Missense_Mutation p.R109Q 0.25 tolerated(0.17) benign(0.044) TCGA-VS-A9UM-01 2 36810511 36810511 G A FEZ2 Silent p.L159L 0.44 TCGA-VS-A9UM-01 2 46608813 46608813 G T EPAS1 Silent p.L708L 0.18 TCGA-VS-A9UM-01 2 75916185 75916185 T C GCFC2 Missense_Mutation p.I502M 0.05 deleterious(0) probably_damaging(0.978) TCGA-VS-A9UM-01 3 151165107 151165107 G A IGSF10 Nonsense_Mutation p.Q888* 0.22 TCGA-VS-A9UM-01 3 155199062 155199062 C T PLCH1 Missense_Mutation p.A1593T 0.19 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UM-01 3 183638381 183638381 C T ABCC5 3'UTR 0.34 TCGA-VS-A9UM-01 3 185867025 185867026 - T DGKG 3'UTR 0.21 TCGA-VS-A9UM-01 3 52443574 52443574 G A BAP1 Nonsense_Mutation p.Q40* 0.67 TCGA-VS-A9UM-01 3 7677979 7677979 C T GRM7 Intron 0.62 TCGA-VS-A9UM-01 3 9754736 9754736 G A CPNE9 Missense_Mutation p.R208Q 0.25 tolerated(0.53) probably_damaging(0.981) TCGA-VS-A9UM-01 4 128995616 128995616 A G LARP1B Intron 0.40 TCGA-VS-A9UM-01 4 15690935 15690935 G A FAM200B 3'Flank 0.70 TCGA-VS-A9UM-01 4 1738968 1738968 C A TACC3 Missense_Mutation p.S583R 0.24 tolerated(0.07) benign(0.202) TCGA-VS-A9UM-01 4 55144087 55144087 A G PDGFRA Missense_Mutation p.Q639R 0.28 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UM-01 5 140572353 140572353 C G PCDHB10 Silent p.L76L 0.37 TCGA-VS-A9UM-01 5 154315565 154315565 T C GEMIN5 Silent p.L115L 0.61 TCGA-VS-A9UM-01 5 176683993 176683993 G T NSD1 Missense_Mutation p.V1603F 0.65 deleterious(0.01) probably_damaging(0.963) TCGA-VS-A9UM-01 6 36298404 36298404 G C C6orf222 Missense_Mutation p.P22A 0.06 tolerated(1) benign(0.047) TCGA-VS-A9UM-01 7 138546056 138546056 G A KIAA1549 Silent p.D1692D 0.41 TCGA-VS-A9UM-01 7 141795371 141795371 G C MGAM Missense_Mutation p.D1593H 0.35 tolerated(0.07) benign(0.198) TCGA-VS-A9UM-01 7 142334217 142334217 G A TRBV20-1 5'UTR 0.35 TCGA-VS-A9UM-01 8 104390466 104390466 C T CTHRC1 Missense_Mutation p.S195F 0.57 deleterious(0.01) possibly_damaging(0.564) TCGA-VS-A9UM-01 8 12880610 12880610 G A KIAA1456 3'UTR 0.52 TCGA-VS-A9UM-01 8 141541577 141541577 G A AGO2 3'UTR 0.23 TCGA-VS-A9UM-01 8 141582956 141582956 C A AGO2 Missense_Mutation p.R97S 0.54 deleterious(0.01) benign(0.15) TCGA-VS-A9UM-01 8 145060629 145060629 G A PARP10 5'Flank 0.16 TCGA-VS-A9UM-01 8 41788200 41788200 A G KAT6A 3'UTR 0.24 TCGA-VS-A9UM-01 8 42780716 42780716 G C HOOK3 Missense_Mutation p.D54H 0.33 deleterious(0.02) possibly_damaging(0.622) TCGA-VS-A9UM-01 8 81431920 81431920 T A ZBTB10 3'UTR 0.43 TCGA-VS-A9UM-01 8 89052961 89052961 G T MMP16 3'UTR 0.35 TCGA-VS-A9UM-01 9 102769968 102769968 A G ERP44 Silent p.L256L 0.32 TCGA-VS-A9UM-01 9 104357046 104357046 G A PPP3R2 Missense_Mutation p.P56L 0.48 deleterious(0) probably_damaging(0.963) TCGA-VS-A9UM-01 9 130513463 130513463 G A SH2D3C Silent p.R224R 0.32 TCGA-VS-A9UM-01 9 135458172 135458172 T C BARHL1 5'UTR 0.44 TCGA-VS-A9UM-01 9 140167400 140167400 G T NELFB 3'UTR 0.25 TCGA-VS-A9UM-01 X 114347694 114347694 C T LRCH2 3'UTR 0.43 TCGA-VS-A9UM-01 X 118540427 118540427 G T SLC25A43 Missense_Mutation p.V94F 0.51 deleterious(0.01) possibly_damaging(0.883) TCGA-VS-A9UM-01 X 131761220 131761220 C T HS6ST2 3'Flank 0.04 TCGA-VS-A9UM-01 X 140996068 140996068 C A MAGEC1 Missense_Mutation p.L960I 0.13 tolerated(0.1) unknown(0) TCGA-VS-A9UM-01 X 151092578 151092578 T A MAGEA4 Missense_Mutation p.F148I 0.31 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UM-01 X 48558961 48558961 C T SUV39H1 Silent p.A215A 0.38 TCGA-VS-A9UM-01 X 70520952 70520952 G A NONO 3'UTR 0.24 TCGA-VS-A9UO-01 10 124214301 124214301 G C ARMS2 Missense_Mutation p.E20Q 0.21 tolerated_low_confidence(0.25) possibly_damaging(0.859) TCGA-VS-A9UO-01 10 17171652 17171652 T C CUBN Missense_Mutation p.N38S 0.42 tolerated(0.44) benign(0.013) TCGA-VS-A9UO-01 10 32096702 32096702 C G ARHGAP12 Missense_Mutation p.G809R 0.15 deleterious(0) probably_damaging(1) TCGA-VS-A9UO-01 11 19955657 19955657 G C NAV2 Missense_Mutation p.G646R 0.62 tolerated(0.38) possibly_damaging(0.732) TCGA-VS-A9UO-01 11 59361188 59361188 G A OSBP Missense_Mutation p.H523Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UO-01 11 74676945 74676945 C T SPCS2 Silent p.P112P 0.29 TCGA-VS-A9UO-01 11 83167412 83167412 G C DLG2 3'Flank 0.27 TCGA-VS-A9UO-01 12 10978126 10978126 G T TAS2R10 Nonsense_Mutation p.S248* 0.38 TCGA-VS-A9UO-01 12 133795512 133795516 CTCCC - ANHX Frame_Shift_Del p.W365Cfs*6 0.36 TCGA-VS-A9UO-01 12 52779243 52779243 C A KRT84 Nonsense_Mutation p.G43* 0.16 TCGA-VS-A9UO-01 12 53201150 53201150 C T KRT4 Silent p.V458V 0.28 TCGA-VS-A9UO-01 12 64854058 64854058 G C TBK1 Missense_Mutation p.L59F 0.30 deleterious(0) probably_damaging(1) TCGA-VS-A9UO-01 12 91348504 91348504 C T CCER1 Missense_Mutation p.D6N 0.13 tolerated(0.9) benign(0.001) TCGA-VS-A9UO-01 13 51287267 51287267 C A DLEU7 3'UTR 0.36 TCGA-VS-A9UO-01 14 20849562 20849562 T A TEP1 Splice_Site p.X1520_splice 0.43 TCGA-VS-A9UO-01 14 23450472 23450472 A T AJUBA Missense_Mutation p.F335Y 0.92 deleterious(0.03) possibly_damaging(0.483) TCGA-VS-A9UO-01 14 23450476 23450476 A C AJUBA Missense_Mutation p.Y334D 0.92 deleterious(0) possibly_damaging(0.902) TCGA-VS-A9UO-01 15 63908814 63908814 T A HERC1 Missense_Mutation p.M4586L 0.51 probably_damaging(0.941) TCGA-VS-A9UO-01 16 31341906 31341906 G T ITGAM Missense_Mutation p.G1087W 0.34 deleterious(0) possibly_damaging(0.819) TCGA-VS-A9UO-01 16 50785675 50785675 C A CYLD Missense_Mutation p.T222K 0.50 tolerated(0.87) benign(0.031) TCGA-VS-A9UO-01 16 87885336 87885336 C T SLC7A5 Missense_Mutation p.G220R 0.68 tolerated(0.31) benign(0.077) TCGA-VS-A9UO-01 17 16342384 16342384 C T TRPV2 3'Flank 0.61 TCGA-VS-A9UO-01 17 27888557 27888557 C G ABHD15 3'UTR 0.25 TCGA-VS-A9UO-01 17 32598905 32598905 G T CCL7 3'UTR 0.40 TCGA-VS-A9UO-01 18 18619444 18619444 G A ROCK1 Missense_Mutation p.T347M 0.35 deleterious(0) possibly_damaging(0.535) TCGA-VS-A9UO-01 19 10893713 10893713 A G DNM2 Missense_Mutation p.R256G 0.39 deleterious(0.01) probably_damaging(0.955) TCGA-VS-A9UO-01 19 10893714 10893714 G C DNM2 Missense_Mutation p.R256T 0.41 tolerated(0.06) possibly_damaging(0.649) TCGA-VS-A9UO-01 19 42407537 42407537 C A ARHGEF1 Missense_Mutation p.R622S 0.30 deleterious(0) possibly_damaging(0.472) TCGA-VS-A9UO-01 19 54966175 54966175 C A LENG8 Missense_Mutation p.P242H 0.37 deleterious(0) probably_damaging(1) TCGA-VS-A9UO-01 19 7927313 7927313 G A EVI5L Missense_Mutation p.E614K 0.28 tolerated(0.08) benign(0.34) TCGA-VS-A9UO-01 1 109740148 109740148 A C KIAA1324 Missense_Mutation p.E725A 0.45 tolerated(0.19) benign(0.007) TCGA-VS-A9UO-01 1 158736070 158736070 G A OR6N1 Missense_Mutation p.L135F 0.26 deleterious(0) benign(0.323) TCGA-VS-A9UO-01 1 158736071 158736071 G C OR6N1 Silent p.T134T 0.29 TCGA-VS-A9UO-01 1 247902807 247902807 C T OR14K1 Silent p.S297S 0.30 TCGA-VS-A9UO-01 1 248685544 248685544 C A OR2G6 Silent p.L199L 0.33 TCGA-VS-A9UO-01 1 53974862 53974877 CCCCGACCAGTCCGTC - GLIS1 Frame_Shift_Del p.D541Rfs*104 0.31 TCGA-VS-A9UO-01 1 71869849 71869849 T A NEGR1 3'UTR 0.39 TCGA-VS-A9UO-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.49 deleterious(0.01) probably_damaging(1) TCGA-VS-A9UO-01 20 61542926 61542926 A T DIDO1 Silent p.P13P 0.19 TCGA-VS-A9UO-01 22 30640021 30640021 G T LIF Missense_Mutation p.N76K 0.35 tolerated(0.3) benign(0.248) TCGA-VS-A9UO-01 22 32202133 32202137 TTTTG - DEPDC5 Frame_Shift_Del p.F415* 0.18 TCGA-VS-A9UO-01 22 40055854 40055854 G A CACNA1I Silent p.A867A 0.43 TCGA-VS-A9UO-01 22 42422917 42422917 C G WBP2NL Missense_Mutation p.P221R 0.34 tolerated(0.07) probably_damaging(0.942) TCGA-VS-A9UO-01 22 46777929 46777929 G A CELSR1 Missense_Mutation p.P2301L 0.36 deleterious(0.03) benign(0.016) TCGA-VS-A9UO-01 22 50656443 50656443 G A TUBGCP6 Missense_Mutation p.P1758S 0.52 tolerated(0.43) possibly_damaging(0.632) TCGA-VS-A9UO-01 2 141356228 141356228 C T LRP1B Missense_Mutation p.R2389K 0.42 benign(0.067) TCGA-VS-A9UO-01 2 1684038 1684038 C G PXDN Silent p.A219A 0.50 TCGA-VS-A9UO-01 2 171687468 171687468 C T GAD1 Missense_Mutation p.P105S 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-VS-A9UO-01 2 232672954 232672954 C G COPS7B 3'UTR 0.44 TCGA-VS-A9UO-01 2 32613928 32613928 G A BIRC6 Silent p.A252A 0.85 TCGA-VS-A9UO-01 2 8877011 8877011 G T KIDINS220 Missense_Mutation p.T1235N 0.69 tolerated(0.11) benign(0.017) TCGA-VS-A9UO-01 3 100964683 100964683 A G IMPG2 Silent p.S502S 0.43 TCGA-VS-A9UO-01 3 113026995 113027007 TCTAACTTACTTG - WDR52 Splice_Site p.X1542_splice 0.45 TCGA-VS-A9UO-01 3 170797308 170797308 A T TNIK Silent p.V1149V 0.46 TCGA-VS-A9UO-01 3 172477967 172477967 C T ECT2 Missense_Mutation p.H200Y 0.59 deleterious(0.01) possibly_damaging(0.731) TCGA-VS-A9UO-01 3 55542344 55542344 A T ERC2 3'UTR 0.36 TCGA-VS-A9UO-01 3 97510612 97510612 C T ARL6 Intron 0.34 TCGA-VS-A9UO-01 4 164393091 164393091 C T TKTL2 Missense_Mutation p.R599H 0.60 deleterious(0) benign(0.229) TCGA-VS-A9UO-01 4 56466687 56466687 A T NMU Splice_Site p.X163_splice 0.58 TCGA-VS-A9UO-01 4 5690907 5690907 G T EVC2 Missense_Mutation p.A228D 0.68 deleterious(0.01) possibly_damaging(0.562) TCGA-VS-A9UO-01 5 1034967 1034967 G A NKD2 Missense_Mutation p.V175I 0.27 deleterious(0) probably_damaging(0.988) TCGA-VS-A9UO-01 5 113698862 113698862 G T KCNN2 Missense_Mutation p.K130N 0.38 deleterious(0) probably_damaging(0.932) TCGA-VS-A9UO-01 5 175824688 175824688 C G CLTB Missense_Mutation p.W128C 0.40 deleterious(0) probably_damaging(0.954) TCGA-VS-A9UO-01 5 175824989 175824989 C T CLTB Silent p.Q98Q 0.23 TCGA-VS-A9UO-01 5 177690251 177690251 G A COL23A1 Silent p.G199G 0.20 TCGA-VS-A9UO-01 6 21000604 21000604 G T CDKAL1 Splice_Site p.X352_splice 0.24 TCGA-VS-A9UO-01 6 46114137 46114137 C T ENPP4 3'UTR 0.32 TCGA-VS-A9UO-01 7 129845238 129845238 G T TMEM209 5'UTR 0.82 TCGA-VS-A9UO-01 7 4900130 4900130 A G PAPOLB Missense_Mutation p.W437R 0.24 deleterious(0) probably_damaging(1) TCGA-VS-A9UO-01 8 24241981 24241981 A T ADAMDEC1 5'UTR 0.24 TCGA-VS-A9UO-01 8 36703135 36703135 C T KCNU1 Missense_Mutation p.R581C 0.32 tolerated(0.2) benign(0.001) TCGA-VS-A9UO-01 8 88885018 88885018 G A DCAF4L2 Silent p.Y394Y 0.33 TCGA-VS-A9UO-01 9 132576491 132576491 C T TOR1A Nonsense_Mutation p.W253* 0.18 TCGA-VS-A9UO-01 9 139110587 139110587 G A QSOX2 Missense_Mutation p.H342Y 0.28 deleterious(0) possibly_damaging(0.703) TCGA-VS-A9UO-01 9 140062168 140062168 G A GRIN1 Intron 0.61 TCGA-VS-A9UO-01 9 967989 967989 C T DMRT1 Silent p.F324F 0.24 TCGA-VS-A9UO-01 X 54224449 54224449 G T WNK3 3'UTR 0.55 TCGA-VS-A9UP-01 10 103826603 103826603 G A HPS6 Missense_Mutation p.E458K 0.16 deleterious(0) probably_damaging(0.946) TCGA-VS-A9UP-01 10 1175698 1175698 G A WDR37 3'UTR 0.25 TCGA-VS-A9UP-01 10 11911539 11911539 C T PROSER2 Missense_Mutation p.P148S 0.35 tolerated(0.27) benign(0.017) TCGA-VS-A9UP-01 10 125526560 125526560 G A CPXM2 Nonsense_Mutation p.Q470* 0.44 TCGA-VS-A9UP-01 10 28250565 28250565 G A ARMC4 Missense_Mutation p.R440C 0.31 deleterious(0) possibly_damaging(0.816) TCGA-VS-A9UP-01 10 35930024 35930024 C G FZD8 Missense_Mutation p.E112Q 0.20 deleterious(0.03) unknown(0) TCGA-VS-A9UP-01 10 43016548 43016548 G C ZNF37BP RNA 0.45 TCGA-VS-A9UP-01 10 75485733 75485733 C T RP11-574K11.28 RNA 0.04 TCGA-VS-A9UP-01 10 92660387 92660387 G T RPP30 Missense_Mutation p.G253V 0.28 tolerated(0.36) benign(0.002) TCGA-VS-A9UP-01 11 1576156 1576156 G C DUSP8 3'UTR 0.35 TCGA-VS-A9UP-01 11 30255300 30255300 C T FSHB Nonsense_Mutation p.R115* 0.41 TCGA-VS-A9UP-01 11 34473689 34473689 G A CAT Missense_Mutation p.E139K 0.15 deleterious(0.01) possibly_damaging(0.815) TCGA-VS-A9UP-01 11 47186630 47186630 G A ARFGAP2 3'UTR 0.35 TCGA-VS-A9UP-01 11 47297670 47297670 G A MADD Missense_Mutation p.D294N 0.13 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 11 57885997 57885997 C T OR9I1 Missense_Mutation p.R307K 0.16 tolerated(0.58) benign(0.002) TCGA-VS-A9UP-01 11 65270598 65270598 C T MALAT1 RNA 0.29 TCGA-VS-A9UP-01 11 66407509 66407509 C A RBM4 Silent p.I109I 0.28 TCGA-VS-A9UP-01 11 69063836 69063836 C A MYEOV Missense_Mutation p.L307I 0.19 unknown(0) TCGA-VS-A9UP-01 11 695553 695553 G A TMEM80 5'Flank 0.52 TCGA-VS-A9UP-01 11 695554 695554 G A TMEM80 5'Flank 0.50 TCGA-VS-A9UP-01 12 100048889 100048889 G C ANKS1B Missense_Mutation p.P410A 0.22 deleterious(0.03) possibly_damaging(0.703) TCGA-VS-A9UP-01 12 110771842 110771842 G C ATP2A2 Missense_Mutation p.G438A 0.24 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 12 120110205 120110205 G T PRKAB1 Missense_Mutation p.G87C 0.22 deleterious(0) possibly_damaging(0.524) TCGA-VS-A9UP-01 12 23818450 23818450 G A SOX5 Nonsense_Mutation p.Q287* 0.22 TCGA-VS-A9UP-01 12 2788782 2788782 C T CACNA1C Missense_Mutation p.P1803L 0.31 deleterious(0.05) benign(0.406) TCGA-VS-A9UP-01 12 31247737 31247739 ACA - DDX11 In_Frame_Del p.N489del 0.19 TCGA-VS-A9UP-01 12 39947689 39947689 A C ABCD2 3'UTR 0.20 TCGA-VS-A9UP-01 12 44187688 44187688 C G TWF1 3'Flank 0.21 TCGA-VS-A9UP-01 12 46577027 46577027 C T SLC38A1 3'UTR 0.26 TCGA-VS-A9UP-01 12 51797026 51797026 G T SLC4A8 Nonsense_Mutation p.E28* 0.16 TCGA-VS-A9UP-01 12 53567269 53567269 G A CSAD Intron 0.43 TCGA-VS-A9UP-01 12 54448887 54448887 G A HOXC4 Silent p.A231A 0.42 TCGA-VS-A9UP-01 12 56216500 56216500 G A DNAJC14 Missense_Mutation p.R551W 0.45 deleterious(0) probably_damaging(0.972) TCGA-VS-A9UP-01 12 56490284 56490284 C T ERBB3 Intron 0.26 TCGA-VS-A9UP-01 12 56666895 56666895 C A CS Missense_Mutation p.M458I 0.42 tolerated(0.31) benign(0.002) TCGA-VS-A9UP-01 12 71148146 71148146 G C PTPRR Intron 0.22 TCGA-VS-A9UP-01 12 71148267 71148267 G C PTPRR Intron 0.18 TCGA-VS-A9UP-01 12 75804383 75804383 G C GLIPR1L2 Missense_Mutation p.R135T 0.12 tolerated(0.34) benign(0.158) TCGA-VS-A9UP-01 12 75804390 75804390 G A GLIPR1L2 Nonsense_Mutation p.W137* 0.11 TCGA-VS-A9UP-01 12 88974232 88974232 G C KITLG 5'UTR 0.41 TCGA-VS-A9UP-01 12 8998793 8998793 C T A2ML1 Missense_Mutation p.S553L 0.54 tolerated(0.13) benign(0.133) TCGA-VS-A9UP-01 12 95485531 95485531 G C FGD6 Missense_Mutation p.Q1268E 0.25 deleterious(0) possibly_damaging(0.584) TCGA-VS-A9UP-01 13 95899238 95899238 C G ABCC4 Silent p.T99T 0.31 TCGA-VS-A9UP-01 13 96743761 96743761 C T HS6ST3 Silent p.L215L 0.45 TCGA-VS-A9UP-01 14 22555036 22555036 G C TRAV23DV6 Missense_Mutation p.E54D 0.11 tolerated(0.31) benign(0.021) TCGA-VS-A9UP-01 14 23341460 23341460 C T LRP10 5'UTR 0.43 TCGA-VS-A9UP-01 14 23532735 23532735 C T ACIN1 Missense_Mutation p.E941K 0.12 benign(0.375) TCGA-VS-A9UP-01 14 23945404 23945404 C G NGDN Intron 0.13 TCGA-VS-A9UP-01 14 31363358 31363358 G A STRN3 3'Flank 0.46 TCGA-VS-A9UP-01 14 32559907 32559907 C T ARHGAP5 Missense_Mutation p.P11L 0.15 deleterious(0.04) possibly_damaging(0.452) TCGA-VS-A9UP-01 14 48143766 48143766 C T MDGA2 Nonsense_Mutation p.W78* 0.10 TCGA-VS-A9UP-01 14 53226419 53226419 C G STYX Missense_Mutation p.Q151E 0.17 deleterious(0.04) possibly_damaging(0.718) TCGA-VS-A9UP-01 14 58924503 58924503 G A KIAA0586 Silent p.K516K 0.21 TCGA-VS-A9UP-01 14 58924513 58924513 C T KIAA0586 Missense_Mutation p.L520F 0.26 tolerated(0.22) benign(0.081) TCGA-VS-A9UP-01 14 61190039 61190039 C A SIX4 Nonsense_Mutation p.E252* 0.29 TCGA-VS-A9UP-01 15 21071203 21071203 C T POTEB2 Silent p.K136K 0.18 TCGA-VS-A9UP-01 15 44876620 44876620 G C SPG11 Nonsense_Mutation p.S1753* 0.33 TCGA-VS-A9UP-01 15 52903441 52903441 C A FAM214A Missense_Mutation p.R139L 0.39 deleterious(0.03) probably_damaging(0.926) TCGA-VS-A9UP-01 15 52903444 52903444 T A FAM214A Missense_Mutation p.D138V 0.37 deleterious(0) possibly_damaging(0.628) TCGA-VS-A9UP-01 15 67430407 67430407 C G SMAD3 Intron 0.29 TCGA-VS-A9UP-01 15 68623346 68623346 C G ITGA11 Missense_Mutation p.G625A 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A9UP-01 15 75091666 75091666 C T CSK Missense_Mutation p.P99L 0.32 tolerated(0.07) possibly_damaging(0.687) TCGA-VS-A9UP-01 15 85191833 85191833 G C WDR73 Missense_Mutation p.F74L 0.24 tolerated(0.08) possibly_damaging(0.542) TCGA-VS-A9UP-01 15 91358417 91358417 G A BLM Missense_Mutation p.A1388T 0.41 tolerated(0.07) benign(0.007) TCGA-VS-A9UP-01 16 16230499 16230499 C T ABCC1 Silent p.L1430L 0.32 TCGA-VS-A9UP-01 16 2166095 2166095 G C PKD1 Missense_Mutation p.L583V 0.29 benign(0.006) TCGA-VS-A9UP-01 16 30768803 30768803 G C C16orf93 Silent p.T330T 0.28 TCGA-VS-A9UP-01 16 70293072 70293072 G A AARS Silent p.I601I 0.55 TCGA-VS-A9UP-01 17 1326232 1326232 G C CRK 3'UTR 0.26 TCGA-VS-A9UP-01 17 15526843 15526843 G C RP11-385D13.1 Missense_Mutation p.P463A 0.23 deleterious_low_confidence(0.02) benign(0.001) TCGA-VS-A9UP-01 17 33968948 33968948 C T AP2B1 Missense_Mutation p.S497L 0.48 tolerated(0.07) benign(0.01) TCGA-VS-A9UP-01 17 37077479 37077479 G A LASP1 3'UTR 0.11 TCGA-VS-A9UP-01 17 37829395 37829395 C T PGAP3 Missense_Mutation p.E270K 0.21 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 17 40120130 40120130 C A CNP Silent p.I16I 0.28 TCGA-VS-A9UP-01 17 40832369 40832369 G T CCR10 Missense_Mutation p.F97L 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-VS-A9UP-01 17 41243830 41243830 G A BRCA1 Nonsense_Mutation p.Q1240* 0.22 TCGA-VS-A9UP-01 17 42335807 42335807 G T SLC4A1 Missense_Mutation p.P354Q 0.22 tolerated(0.13) benign(0.03) TCGA-VS-A9UP-01 17 43320577 43320577 G A FMNL1 Silent p.Q701Q 0.14 TCGA-VS-A9UP-01 17 44248542 44248542 C T KANSL1 Missense_Mutation p.G323E 0.21 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 17 44806220 44806220 G C NSF Splice_Site p.X610_splice 0.25 TCGA-VS-A9UP-01 17 47122413 47122413 G A IGF2BP1 Missense_Mutation p.E461K 0.29 deleterious(0) probably_damaging(0.992) TCGA-VS-A9UP-01 17 49270840 49270840 G C MBTD1 Missense_Mutation p.D468E 0.24 tolerated(0.48) benign(0) TCGA-VS-A9UP-01 17 56357796 56357796 G C MPO Missense_Mutation p.S60W 0.21 deleterious(0) possibly_damaging(0.902) TCGA-VS-A9UP-01 17 71205103 71205103 G A FAM104A 3'UTR 0.50 TCGA-VS-A9UP-01 17 71205104 71205104 A T FAM104A 3'UTR 0.53 TCGA-VS-A9UP-01 17 7809572 7809572 C T CHD3 Intron 0.39 TCGA-VS-A9UP-01 17 79425887 79425887 G T RP11-1055B8.7 Nonsense_Mutation p.E1833* 0.67 TCGA-VS-A9UP-01 18 12325244 12325244 C A TUBB6 Silent p.I152I 0.26 TCGA-VS-A9UP-01 18 19263900 19263912 ACTCCTCTGTTGT - ABHD3 Frame_Shift_Del p.N175Rfs*7 0.14 TCGA-VS-A9UP-01 18 198112 198112 C T USP14 Silent p.F247F 0.26 TCGA-VS-A9UP-01 18 47117070 47117070 G A LIPG 3'UTR 0.40 TCGA-VS-A9UP-01 18 55143927 55143927 C A ONECUT2 Missense_Mutation p.S496Y 0.22 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-VS-A9UP-01 18 9886754 9886754 C T TXNDC2 Missense_Mutation p.S93L 0.18 deleterious(0.04) benign(0.33) TCGA-VS-A9UP-01 19 16687128 16687128 G C MED26 Missense_Mutation p.P505A 0.35 deleterious(0.01) possibly_damaging(0.757) TCGA-VS-A9UP-01 19 16687511 16687511 G C MED26 Missense_Mutation p.S377C 0.62 deleterious(0.02) probably_damaging(0.979) TCGA-VS-A9UP-01 19 16688101 16688101 G A MED26 Silent p.L180L 0.44 TCGA-VS-A9UP-01 19 20235878 20235878 C T CTC-260E6.2 RNA 0.31 TCGA-VS-A9UP-01 19 36369551 36369551 C T APLP1 Nonsense_Mutation p.R549* 0.08 TCGA-VS-A9UP-01 19 36673718 36673718 C T ZNF565 Missense_Mutation p.V384I 0.22 tolerated(1) benign(0.402) TCGA-VS-A9UP-01 19 36673722 36673722 C G ZNF565 Missense_Mutation p.Q382H 0.18 tolerated(0.11) probably_damaging(0.911) TCGA-VS-A9UP-01 19 39826611 39826611 G T GMFG Intron 0.19 TCGA-VS-A9UP-01 19 39944149 39944149 C G SUPT5H Missense_Mutation p.L77V 0.35 deleterious(0.02) possibly_damaging(0.677) TCGA-VS-A9UP-01 19 40433960 40433960 G A FCGBP Silent p.I103I 0.24 TCGA-VS-A9UP-01 19 41812559 41812559 G A HNRNPUL1 3'UTR 0.19 TCGA-VS-A9UP-01 19 4325511 4325511 C T STAP2 Silent p.P287P 0.35 TCGA-VS-A9UP-01 19 44590406 44590406 C T ZNF284 Missense_Mutation p.H259Y 0.26 tolerated(1) benign(0.004) TCGA-VS-A9UP-01 19 45911950 45911950 C T CD3EAP Silent p.L242L 0.23 TCGA-VS-A9UP-01 19 45912053 45912053 C G CD3EAP Missense_Mutation p.T276S 0.24 tolerated(0.15) benign(0.043) TCGA-VS-A9UP-01 19 45916760 45916760 C T ERCC1 3'UTR 0.26 TCGA-VS-A9UP-01 19 45916775 45916775 C T ERCC1 3'UTR 0.21 TCGA-VS-A9UP-01 19 49001275 49001275 C G LMTK3 Missense_Mutation p.R1046S 0.10 unknown(0) TCGA-VS-A9UP-01 19 49560413 49560413 C G NTF4 3'Flank 0.26 TCGA-VS-A9UP-01 19 49637077 49637077 G C PPFIA3 Missense_Mutation p.E396Q 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-VS-A9UP-01 19 49637904 49637904 G C PPFIA3 Silent p.L462L 0.34 TCGA-VS-A9UP-01 19 49638131 49638131 G A PPFIA3 Silent p.E493E 0.12 TCGA-VS-A9UP-01 19 49641481 49641481 G T PPFIA3 Nonsense_Mutation p.E625* 0.27 TCGA-VS-A9UP-01 19 49644755 49644755 G A PPFIA3 Missense_Mutation p.R816Q 0.25 deleterious(0) benign(0.037) TCGA-VS-A9UP-01 19 49897753 49897753 G A CCDC155 Missense_Mutation p.E22K 0.27 tolerated(0.07) possibly_damaging(0.713) TCGA-VS-A9UP-01 19 50774791 50774791 C T MYH14 Silent p.S1053S 0.15 TCGA-VS-A9UP-01 19 53431658 53431658 A - ZNF321P 3'Flank 0.20 TCGA-VS-A9UP-01 19 53793606 53793606 G A BIRC8 Missense_Mutation p.L8F 0.11 tolerated(0.11) probably_damaging(0.968) TCGA-VS-A9UP-01 19 53793607 53793607 C T BIRC8 Silent p.R7R 0.12 TCGA-VS-A9UP-01 19 56934886 56934886 C A ZNF583 Missense_Mutation p.Q287K 0.26 tolerated(0.08) benign(0.32) TCGA-VS-A9UP-01 19 58579352 58579352 C A ZNF135 Silent p.G524G 0.19 TCGA-VS-A9UP-01 1 110136709 110136709 G C GNAI3 3'UTR 0.13 TCGA-VS-A9UP-01 1 113265703 113265703 G A FAM19A3 Missense_Mutation p.E61K 0.25 deleterious(0.01) possibly_damaging(0.836) TCGA-VS-A9UP-01 1 116242940 116242940 G C CASQ2 3'UTR 0.22 TCGA-VS-A9UP-01 1 1235970 1235974 GGGCC - ACAP3 Frame_Shift_Del p.R146Pfs*38 0.36 TCGA-VS-A9UP-01 1 150902504 150902504 C T SETDB1 Missense_Mutation p.R108W 0.33 deleterious(0.01) possibly_damaging(0.487) TCGA-VS-A9UP-01 1 152280838 152280838 C A FLG Missense_Mutation p.G2175V 0.18 probably_damaging(0.953) TCGA-VS-A9UP-01 1 153745950 153745950 C G INTS3 3'UTR 0.49 TCGA-VS-A9UP-01 1 153746091 153746091 C G INTS3 3'UTR 0.32 TCGA-VS-A9UP-01 1 155291691 155291691 C A RUSC1 Missense_Mutation p.P43T 0.39 tolerated_low_confidence(0.09) probably_damaging(0.998) TCGA-VS-A9UP-01 1 155294530 155294530 C A RUSC1 Intron 0.30 TCGA-VS-A9UP-01 1 158815759 158815759 G A MNDA Missense_Mutation p.G318E 0.42 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 1 158988362 158988362 C A IFI16 Missense_Mutation p.A298E 0.24 deleterious(0.03) probably_damaging(0.934) TCGA-VS-A9UP-01 1 161123883 161123883 G A UFC1 Silent p.L32L 0.15 TCGA-VS-A9UP-01 1 180772628 180772628 C T XPR1 Missense_Mutation p.R110C 0.14 deleterious(0.01) possibly_damaging(0.849) TCGA-VS-A9UP-01 1 182835613 182835613 G A DHX9 Missense_Mutation p.R456Q 0.30 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 1 186084052 186084052 G A HMCN1 Missense_Mutation p.R3793H 0.24 benign(0.015) TCGA-VS-A9UP-01 1 201282449 201282449 C T PKP1 Silent p.R154R 0.29 TCGA-VS-A9UP-01 1 206153991 206153991 G C FAM72A Missense_Mutation p.E130D 0.35 tolerated(0.85) benign(0.002) TCGA-VS-A9UP-01 1 21071299 21071299 C T HP1BP3 Silent p.V551V 0.45 TCGA-VS-A9UP-01 1 220174564 220174564 C T EPRS Silent p.L699L 0.29 TCGA-VS-A9UP-01 1 226333884 226333884 G A ACBD3 3'UTR 0.09 TCGA-VS-A9UP-01 1 28149823 28149823 C A STX12 3'UTR 0.30 TCGA-VS-A9UP-01 1 29476664 29476664 G A SRSF4 Nonsense_Mutation p.R207* 0.20 TCGA-VS-A9UP-01 1 32950785 32950785 C T ZBTB8B Silent p.F418F 0.38 TCGA-VS-A9UP-01 1 33562307 33562307 G C ADC Splice_Site p.X252_splice 0.14 TCGA-VS-A9UP-01 1 35870629 35870629 G A ZMYM4 Silent p.R1178R 0.06 TCGA-VS-A9UP-01 1 44083121 44083121 C G PTPRF Missense_Mutation p.I1359M 0.40 deleterious(0) probably_damaging(0.945) TCGA-VS-A9UP-01 1 79472348 79472348 G A ELTD1 5'UTR 0.28 TCGA-VS-A9UP-01 1 914971 914971 G A C1orf170 Missense_Mutation p.S386L 0.31 tolerated(0.08) benign(0.028) TCGA-VS-A9UP-01 20 13604140 13604140 C A TASP1 Missense_Mutation p.G79C 0.16 deleterious(0) probably_damaging(0.99) TCGA-VS-A9UP-01 20 25229006 25229006 C A PYGB Silent p.L64L 0.21 TCGA-VS-A9UP-01 20 31291155 31291155 C T COMMD7 3'UTR 0.22 TCGA-VS-A9UP-01 20 33519843 33519843 C T GSS Missense_Mutation p.E310K 0.17 tolerated(0.26) possibly_damaging(0.697) TCGA-VS-A9UP-01 20 33764025 33764025 G C PROCR Missense_Mutation p.R126T 0.15 tolerated(0.23) benign(0.006) TCGA-VS-A9UP-01 20 34095905 34095905 G A CEP250 Silent p.E2264E 0.20 TCGA-VS-A9UP-01 20 37203557 37203557 G C RALGAPB Missense_Mutation p.E1478Q 0.26 deleterious(0.02) probably_damaging(0.945) TCGA-VS-A9UP-01 20 40086012 40086012 G A CHD6 Silent p.L907L 0.13 TCGA-VS-A9UP-01 20 43850913 43850913 C T SEMG2 Missense_Mutation p.H214Y 0.08 tolerated(0.68) possibly_damaging(0.844) TCGA-VS-A9UP-01 20 48808640 48808640 G T CEBPB 3'UTR 0.17 TCGA-VS-A9UP-01 20 52198584 52198584 G A ZNF217 Missense_Mutation p.S261L 0.10 deleterious(0.02) benign(0.051) TCGA-VS-A9UP-01 20 62851086 62851086 C T MYT1 Silent p.D664D 0.12 TCGA-VS-A9UP-01 20 62851108 62851108 A G MYT1 Missense_Mutation p.S672G 0.20 probably_damaging(0.997) TCGA-VS-A9UP-01 21 30302787 30302787 G C LTN1 Missense_Mutation p.R1808G 0.45 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UP-01 21 32638577 32638577 G C TIAM1 Missense_Mutation p.Q238E 0.25 tolerated(0.08) benign(0.002) TCGA-VS-A9UP-01 22 22682069 22682069 C T IGLV1-50 Missense_Mutation p.S84F 0.09 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-VS-A9UP-01 22 24106338 24106338 G A C22orf15 Silent p.Q30Q 0.18 TCGA-VS-A9UP-01 22 29191019 29191019 C T XBP1 3'UTR 0.17 TCGA-VS-A9UP-01 22 29191372 29191372 C G XBP1 3'UTR 0.11 TCGA-VS-A9UP-01 22 39477124 39477124 G A APOBEC3G Missense_Mutation p.V120I 0.09 tolerated(0.21) benign(0.26) TCGA-VS-A9UP-01 22 50719554 50719554 C T PLXNB2 Missense_Mutation p.E1243K 0.27 tolerated(0.06) probably_damaging(0.997) TCGA-VS-A9UP-01 2 101924633 101924633 C T RNF149 Missense_Mutation p.E140K 0.14 tolerated(0.7) benign(0.023) TCGA-VS-A9UP-01 2 120922424 120922424 G A EPB41L5 Missense_Mutation p.E634K 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.524) TCGA-VS-A9UP-01 2 135745447 135745447 G C MAP3K19 Missense_Mutation p.S332C 0.19 tolerated(0.06) benign(0.048) TCGA-VS-A9UP-01 2 149227887 149227887 A G MBD5 Missense_Mutation p.N792S 0.30 tolerated_low_confidence(0.16) possibly_damaging(0.486) TCGA-VS-A9UP-01 2 152266744 152266744 C G RIF1 5'UTR 0.33 TCGA-VS-A9UP-01 2 152346546 152346546 G A NEB Missense_Mutation p.S8448F 0.29 probably_damaging(0.921) TCGA-VS-A9UP-01 2 179430899 179430899 C T TTN Missense_Mutation p.D26654N 0.37 TCGA-VS-A9UP-01 2 191236000 191236000 G C INPP1 Missense_Mutation p.E358Q 0.32 tolerated(0.22) benign(0.003) TCGA-VS-A9UP-01 2 207041446 207041446 G A GPR1 Missense_Mutation p.R176W 0.31 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 2 208994218 208994218 G A CRYGC Nonsense_Mutation p.Q67* 0.24 TCGA-VS-A9UP-01 2 240500537 240500537 G A AC079612.1 Missense_Mutation p.E140K 0.27 possibly_damaging(0.486) TCGA-VS-A9UP-01 2 27353576 27353576 C G ABHD1 Silent p.L394L 0.14 TCGA-VS-A9UP-01 2 28352189 28352189 G A BRE Missense_Mutation p.E208K 0.15 tolerated(0.2) possibly_damaging(0.546) TCGA-VS-A9UP-01 2 32724628 32724628 C T BIRC6 Missense_Mutation p.T2828I 0.24 benign(0.143) TCGA-VS-A9UP-01 2 43993978 43993978 C A PLEKHH2 3'UTR 0.33 TCGA-VS-A9UP-01 2 54853177 54853177 G A SPTBN1 Missense_Mutation p.V484M 0.08 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UP-01 2 73492598 73492598 C A FBXO41 Missense_Mutation p.S459I 0.33 deleterious(0) benign(0.068) TCGA-VS-A9UP-01 2 74908553 74908553 G C SEMA4F 3'UTR 0.17 TCGA-VS-A9UP-01 2 85890607 85890607 C T SFTPB Silent p.P300P 0.11 TCGA-VS-A9UP-01 3 108788595 108788595 C T MORC1 Silent p.A233A 0.09 TCGA-VS-A9UP-01 3 121414272 121414272 C G GOLGB1 Missense_Mutation p.E1700Q 0.08 probably_damaging(0.999) TCGA-VS-A9UP-01 3 121414347 121414347 C G GOLGB1 Missense_Mutation p.E1675Q 0.08 probably_damaging(0.999) TCGA-VS-A9UP-01 3 129368279 129368279 A T TMCC1 3'UTR 0.12 TCGA-VS-A9UP-01 3 130400430 130400430 G A PIK3R4 Nonsense_Mutation p.Q1205* 0.15 TCGA-VS-A9UP-01 3 134201737 134201737 C T ANAPC13 Missense_Mutation p.E4K 0.12 tolerated(0.24) benign(0.007) TCGA-VS-A9UP-01 3 135722203 135722203 G C PPP2R3A Missense_Mutation p.M621I 0.20 deleterious(0.01) possibly_damaging(0.885) TCGA-VS-A9UP-01 3 139279092 139279092 C T NMNAT3 3'UTR 0.06 TCGA-VS-A9UP-01 3 142122590 142122590 G C XRN1 Missense_Mutation p.Q677E 0.17 tolerated(0.09) benign(0.013) TCGA-VS-A9UP-01 3 147657837 147657837 T A RP11-71N10.1 RNA 0.18 TCGA-VS-A9UP-01 3 150347421 150347421 G A SELT 3'UTR 0.25 TCGA-VS-A9UP-01 3 156547122 156547122 G A LEKR1 Missense_Mutation p.D2N 0.22 tolerated(0.08) possibly_damaging(0.728) TCGA-VS-A9UP-01 3 171177830 171177830 C T TNIK Missense_Mutation p.R8Q 0.15 deleterious_low_confidence(0.03) unknown(0) TCGA-VS-A9UP-01 3 183432950 183432950 C T YEATS2 5'UTR 0.15 TCGA-VS-A9UP-01 3 183677549 183677549 C T ABCC5 Silent p.K818K 0.12 TCGA-VS-A9UP-01 3 183908929 183908929 G A ABCF3 Silent p.E485E 0.15 TCGA-VS-A9UP-01 3 183951234 183951234 C G VWA5B2 Intron 0.20 TCGA-VS-A9UP-01 3 185764845 185764845 C T ETV5 3'UTR 0.10 TCGA-VS-A9UP-01 3 195594568 195594568 C G TNK2 Missense_Mutation p.K930N 0.20 deleterious_low_confidence(0.01) benign(0.208) TCGA-VS-A9UP-01 3 196754729 196754729 G A MFI2 Silent p.H34H 0.12 TCGA-VS-A9UP-01 3 197273345 197273345 C T BDH1 5'UTR 0.08 TCGA-VS-A9UP-01 3 197273346 197273346 C T BDH1 5'UTR 0.08 TCGA-VS-A9UP-01 3 46724702 46724702 C T ALS2CL Missense_Mutation p.A343T 0.45 tolerated(0.14) benign(0.001) TCGA-VS-A9UP-01 3 46775150 46775150 C T PRSS46 Missense_Mutation p.G166S 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-VS-A9UP-01 3 48205919 48205919 C T CDC25A Silent p.V400V 0.53 TCGA-VS-A9UP-01 3 4829759 4829759 C T ITPR1 Silent p.I2233I 0.41 TCGA-VS-A9UP-01 3 49338009 49338009 G T USP4 Missense_Mutation p.S468Y 0.53 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 3 73432704 73432704 C G PDZRN3 Missense_Mutation p.E1005Q 0.55 deleterious(0.03) probably_damaging(0.987) TCGA-VS-A9UP-01 4 106819056 106819056 A T NPNT Splice_Site p.X24_splice 0.39 TCGA-VS-A9UP-01 4 147561722 147561722 G A POU4F2 Missense_Mutation p.R331H 0.27 deleterious(0) benign(0.41) TCGA-VS-A9UP-01 4 159750316 159750316 C G FNIP2 Missense_Mutation p.S107C 0.30 deleterious(0.02) possibly_damaging(0.881) TCGA-VS-A9UP-01 4 169824965 169824965 C T PALLD Nonsense_Mutation p.Q844* 0.32 TCGA-VS-A9UP-01 4 2831530 2831530 G C SH3BP2 Missense_Mutation p.E356D 0.15 tolerated_low_confidence(0.15) benign(0.055) TCGA-VS-A9UP-01 4 55602927 55602927 C G KIT Missense_Mutation p.F879L 0.21 deleterious(0) benign(0.272) TCGA-VS-A9UP-01 4 56759749 56759753 ATATT - EXOC1 Frame_Shift_Del p.I586Sfs*4 0.27 TCGA-VS-A9UP-01 4 68693103 68693103 C T TMPRSS11D Silent p.V276V 0.23 TCGA-VS-A9UP-01 4 74459241 74459241 G C RASSF6 Missense_Mutation p.L104V 0.32 deleterious(0) probably_damaging(0.945) TCGA-VS-A9UP-01 4 79420917 79420917 A C FRAS1 Missense_Mutation p.E3053A 0.24 probably_damaging(1) TCGA-VS-A9UP-01 4 843450 843450 C A GAK 3'UTR 0.25 TCGA-VS-A9UP-01 4 90816729 90816729 G A MMRN1 Missense_Mutation p.E203K 0.14 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UP-01 4 9785025 9785025 G C DRD5 Missense_Mutation p.D458H 0.21 deleterious(0) possibly_damaging(0.792) TCGA-VS-A9UP-01 5 11236919 11236919 C G CTNND2 Missense_Mutation p.D549H 0.22 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UP-01 5 118728684 118728684 G C TNFAIP8 Missense_Mutation p.E69Q 0.43 tolerated(0.95) probably_damaging(0.996) TCGA-VS-A9UP-01 5 140175710 140175710 C T PCDHA2 Silent p.C387C 0.12 TCGA-VS-A9UP-01 5 150925873 150925873 G C FAT2 Missense_Mutation p.I1605M 0.36 probably_damaging(0.961) TCGA-VS-A9UP-01 5 170876194 170876194 G T FGF18 Silent p.R98R 0.15 TCGA-VS-A9UP-01 5 180041137 180041137 C G FLT4 Missense_Mutation p.D1088H 0.55 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 5 180041149 180041149 C T FLT4 Missense_Mutation p.E1084K 0.54 deleterious(0) probably_damaging(0.934) TCGA-VS-A9UP-01 5 57750507 57750507 G T PLK2 Missense_Mutation p.T654N 0.17 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UP-01 5 63509706 63509706 G T RNF180 Nonsense_Mutation p.E185* 0.27 TCGA-VS-A9UP-01 5 76359461 76359461 C T AGGF1 3'UTR 0.75 TCGA-VS-A9UP-01 6 106634459 106634459 C G ATG5 Missense_Mutation p.D262H 0.09 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 6 106634531 106634531 C G ATG5 Missense_Mutation p.V238L 0.14 tolerated(0.15) benign(0.211) TCGA-VS-A9UP-01 6 116573425 116573425 G A TSPYL4 3'UTR 0.25 TCGA-VS-A9UP-01 6 125146688 125146688 T G NKAIN2 3'UTR 0.36 TCGA-VS-A9UP-01 6 126136431 126136438 TTACAGGG - NCOA7 Splice_Site 0.24 TCGA-VS-A9UP-01 6 159398721 159398721 C T RSPH3 Missense_Mutation p.R511Q 0.41 tolerated_low_confidence(1) benign(0) TCGA-VS-A9UP-01 6 30675942 30675942 C T MDC1 Missense_Mutation p.R805K 0.48 tolerated(0.07) benign(0.211) TCGA-VS-A9UP-01 6 30680590 30680590 C G MDC1 Missense_Mutation p.D377H 0.58 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UP-01 6 30681483 30681483 C T MDC1 Missense_Mutation p.E177K 0.33 tolerated(0.12) benign(0.355) TCGA-VS-A9UP-01 6 32260529 32260529 C G C6orf10 3'UTR 0.44 TCGA-VS-A9UP-01 6 32261156 32261156 C A C6orf10 Nonsense_Mutation p.E432* 0.50 TCGA-VS-A9UP-01 6 34393790 34393790 G C RPS10 Intron 0.45 TCGA-VS-A9UP-01 6 42236944 42236944 C T TRERF1 Missense_Mutation p.E129K 0.59 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-VS-A9UP-01 6 53132593 53132593 C G ELOVL5 3'Flank 0.18 TCGA-VS-A9UP-01 6 84913737 84913737 C G KIAA1009 Missense_Mutation p.E217Q 0.48 tolerated(0.38) benign(0.114) TCGA-VS-A9UP-01 6 99849385 99849385 C A PNISR Missense_Mutation p.K483N 0.42 tolerated_low_confidence(0.06) possibly_damaging(0.851) TCGA-VS-A9UP-01 7 100608639 100608639 C A MUC3A Intron 0.42 TCGA-VS-A9UP-01 7 104654028 104654028 C G KMT2E 5'Flank 0.31 TCGA-VS-A9UP-01 7 106843922 106843922 G A COG5 3'UTR 0.24 TCGA-VS-A9UP-01 7 115897488 115897488 A C TES Silent p.V406V 0.23 TCGA-VS-A9UP-01 7 12275021 12275021 C A TMEM106B 3'UTR 0.23 TCGA-VS-A9UP-01 7 142566759 142566759 G A EPHB6 Silent p.L772L 0.54 TCGA-VS-A9UP-01 7 149558300 149558300 C T ZNF862 Missense_Mutation p.P684L 0.23 tolerated(0.14) probably_damaging(0.991) TCGA-VS-A9UP-01 7 151078464 151078464 G A WDR86 3'UTR 0.16 TCGA-VS-A9UP-01 7 151904469 151904469 C G KMT2C Missense_Mutation p.E1253Q 0.35 probably_damaging(0.928) TCGA-VS-A9UP-01 7 32908585 32908585 C T KBTBD2 3'UTR 0.39 TCGA-VS-A9UP-01 7 3998562 3998562 G A SDK1 Splice_Site p.X384_splice 0.15 TCGA-VS-A9UP-01 7 43846887 43846887 C G BLVRA 3'UTR 0.26 TCGA-VS-A9UP-01 7 44104487 44104487 C T PGAM2 Missense_Mutation p.R180Q 0.25 tolerated(0.15) benign(0.081) TCGA-VS-A9UP-01 7 5569285 5569285 C T ACTB Missense_Mutation p.D2N 0.30 tolerated_low_confidence(0.07) benign(0.26) TCGA-VS-A9UP-01 7 57472779 57472779 C T MIR3147 RNA 0.20 TCGA-VS-A9UP-01 7 6066397 6066397 G A EIF2AK1 Nonsense_Mutation p.Q576* 0.35 TCGA-VS-A9UP-01 7 75176293 75176293 G C HIP1 Missense_Mutation p.Q835E 0.54 deleterious(0.03) benign(0.043) TCGA-VS-A9UP-01 7 75184739 75184739 G A HIP1 Silent p.I648I 0.38 TCGA-VS-A9UP-01 8 110351564 110351564 G A ENY2 Silent p.L33L 0.31 TCGA-VS-A9UP-01 8 134488232 134488232 G A ST3GAL1 Silent p.L12L 0.53 TCGA-VS-A9UP-01 8 144654600 144654600 C A MROH6 Silent p.G95G 0.16 TCGA-VS-A9UP-01 8 144808820 144808820 G A FAM83H Silent p.L937L 0.40 TCGA-VS-A9UP-01 8 145160606 145160606 C A MAF1 Nonsense_Mutation p.S7* 0.21 TCGA-VS-A9UP-01 8 24809213 24809213 A G CTD-2168K21.2 5'Flank 0.14 TCGA-VS-A9UP-01 8 48648176 48648176 G A SPIDR 3'UTR 0.36 TCGA-VS-A9UP-01 8 68334695 68334695 C G CPA6 3'UTR 0.22 TCGA-VS-A9UP-01 8 69243520 69243520 G A C8orf34 Silent p.P91P 0.14 TCGA-VS-A9UP-01 9 125391304 125391304 T A OR1B1 Missense_Mutation p.T171S 0.38 deleterious(0.01) benign(0.024) TCGA-VS-A9UP-01 9 125391306 125391306 C T OR1B1 Nonsense_Mutation p.W170* 0.38 TCGA-VS-A9UP-01 9 136269129 136269129 G A C9orf96 Silent p.V563V 0.21 TCGA-VS-A9UP-01 9 136323153 136323153 C A ADAMTS13 Silent p.A1338A 0.29 TCGA-VS-A9UP-01 9 139820282 139820282 G T TRAF2 Nonsense_Mutation p.E479* 0.23 TCGA-VS-A9UP-01 9 139958938 139958938 C T SAPCD2 3'UTR 0.44 TCGA-VS-A9UP-01 9 140120611 140120611 C G C9orf169 3'UTR 0.32 TCGA-VS-A9UP-01 9 140508658 140508658 C G ARRDC1 Missense_Mutation p.L204V 0.18 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UP-01 9 19373646 19373646 G C DENND4C 3'Flank 0.11 TCGA-VS-A9UP-01 9 32543106 32543106 C T TOPORS Missense_Mutation p.D473N 0.40 tolerated(0.07) benign(0.25) TCGA-VS-A9UP-01 9 34728637 34728637 G A FAM205A Silent p.V53V 0.41 TCGA-VS-A9UP-01 9 72000722 72000722 C A FAM189A2 Missense_Mutation p.P239T 0.42 tolerated(0.11) benign(0.005) TCGA-VS-A9UP-01 X 101970755 101970755 A G GPRASP2 Missense_Mutation p.T320A 0.20 tolerated(0.66) benign(0.008) TCGA-VS-A9UP-01 X 107224668 107224668 G A TEX13B Missense_Mutation p.A194V 0.25 tolerated(0.1) benign(0.093) TCGA-VS-A9UP-01 X 120009369 120009369 G A CT47B1 Silent p.V52V 0.13 TCGA-VS-A9UP-01 X 141290840 141290840 T A MAGEC2 Nonsense_Mutation p.K312* 0.40 TCGA-VS-A9UP-01 X 148074884 148074884 G A AFF2 3'UTR 0.36 TCGA-VS-A9UP-01 X 148075415 148075415 G A AFF2 3'UTR 0.18 TCGA-VS-A9UP-01 X 148075776 148075776 G C AFF2 3'UTR 0.32 TCGA-VS-A9UP-01 X 148076426 148076426 G A AFF2 3'UTR 0.31 TCGA-VS-A9UP-01 X 148077090 148077090 G T AFF2 3'UTR 0.21 TCGA-VS-A9UP-01 X 152083324 152083324 G A ZNF185 Silent p.L35L 0.28 TCGA-VS-A9UP-01 X 15564936 15564936 G C BMX Missense_Mutation p.D563H 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A9UP-01 X 34675116 34675116 C T TMEM47 Missense_Mutation p.V11M 0.21 tolerated(0.1) benign(0.38) TCGA-VS-A9UP-01 X 47424724 47424724 G C ARAF Missense_Mutation p.E178Q 0.12 tolerated(0.41) benign(0.255) TCGA-VS-A9UP-01 X 49862018 49862018 G A CLCN5 3'UTR 0.41 TCGA-VS-A9UP-01 X 67943846 67943846 C T STARD8 Missense_Mutation p.P1026L 0.19 deleterious(0.03) benign(0.357) TCGA-VS-A9UP-01 X 72667516 72667516 G A CDX4 Missense_Mutation p.A143T 0.18 tolerated(0.73) benign(0.002) TCGA-VS-A9UQ-01 10 71690281 71690281 A G COL13A1 Silent p.K541K 0.08 TCGA-VS-A9UQ-01 11 21305928 21305928 G A NELL1 Intron 0.33 TCGA-VS-A9UQ-01 11 27742031 27742031 G A RP11-587D21.4 Intron 0.06 TCGA-VS-A9UQ-01 11 45954606 45954606 T C PHF21A 3'Flank 0.38 TCGA-VS-A9UQ-01 12 112512492 112512492 C G NAA25 Missense_Mutation p.A285P 0.35 tolerated(0.19) benign(0.017) TCGA-VS-A9UQ-01 12 49434396 49434396 C T KMT2D Missense_Mutation p.R2386Q 0.26 probably_damaging(0.99) TCGA-VS-A9UQ-01 13 50273915 50273915 G A KPNA3 3'UTR 0.25 TCGA-VS-A9UQ-01 13 61987576 61987576 G A PCDH20 Missense_Mutation p.P219L 0.28 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UQ-01 14 92621495 92621495 G A CPSF2 Missense_Mutation p.D424N 0.33 tolerated(0.15) benign(0.427) TCGA-VS-A9UQ-01 15 45898684 45898684 T C BLOC1S6 Missense_Mutation p.L164S 0.38 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UQ-01 15 48738909 48738909 A G FBN1 Missense_Mutation p.C1928R 0.32 probably_damaging(0.928) TCGA-VS-A9UQ-01 15 66729100 66729100 T A MAP2K1 Missense_Mutation p.I103N 0.53 deleterious(0) probably_damaging(0.961) TCGA-VS-A9UQ-01 15 74006610 74006610 G A CD276 3'UTR 0.35 TCGA-VS-A9UQ-01 16 2503467 2503467 C - CCNF Frame_Shift_Del p.P550Rfs*80 0.12 TCGA-VS-A9UQ-01 16 84486946 84486946 C A ATP2C2 Missense_Mutation p.T650N 0.29 deleterious(0) probably_damaging(0.989) TCGA-VS-A9UQ-01 17 56621255 56621255 C T C17orf47 Missense_Mutation p.R98H 0.24 tolerated(0.23) benign(0.001) TCGA-VS-A9UQ-01 17 7216040 7216040 G A GPS2 3'UTR 0.67 TCGA-VS-A9UQ-01 18 54358459 54358459 G A WDR7 Missense_Mutation p.G244R 0.21 deleterious(0.01) possibly_damaging(0.647) TCGA-VS-A9UQ-01 19 13470433 13470433 T C CACNA1A Missense_Mutation p.D322G 0.32 possibly_damaging(0.908) TCGA-VS-A9UQ-01 19 21991597 21991597 A T ZNF43 Silent p.T414T 0.07 TCGA-VS-A9UQ-01 1 154524632 154524632 G A UBE2Q1 Silent p.N301N 0.38 TCGA-VS-A9UQ-01 1 160057685 160057685 A T KCNJ9 3'UTR 0.21 TCGA-VS-A9UQ-01 1 201104701 201104701 C T TMEM9 3'UTR 0.32 TCGA-VS-A9UQ-01 1 216062091 216062091 A G USH2A Missense_Mutation p.S2634P 0.14 possibly_damaging(0.651) TCGA-VS-A9UQ-01 1 29586007 29586007 G A PTPRU Silent p.A202A 0.28 TCGA-VS-A9UQ-01 1 75036910 75036910 G C C1orf173 Missense_Mutation p.A1495G 0.32 tolerated(0.17) benign(0.006) TCGA-VS-A9UQ-01 1 9322289 9322289 G T H6PD Missense_Mutation p.G306V 0.23 tolerated(0.17) benign(0.222) TCGA-VS-A9UQ-01 20 17588026 17588026 T C DSTN 3'UTR 0.26 TCGA-VS-A9UQ-01 20 44527459 44527459 A G PLTP 3'UTR 0.39 TCGA-VS-A9UQ-01 2 145157793 145157793 G A ZEB2 Missense_Mutation p.H321Y 0.25 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UQ-01 2 155307319 155307319 T A GALNT13 3'UTR 0.12 TCGA-VS-A9UQ-01 2 174939641 174939641 G A OLA1 3'UTR 0.22 TCGA-VS-A9UQ-01 2 198267361 198267361 T C SF3B1 Missense_Mutation p.K666E 0.28 deleterious(0) probably_damaging(0.983) TCGA-VS-A9UQ-01 2 55515602 55515602 C T CCDC88A 3'UTR 0.36 TCGA-VS-A9UQ-01 3 101572244 101572244 C T NFKBIZ Nonsense_Mutation p.Q292* 0.46 TCGA-VS-A9UQ-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.25 deleterious(0.04) probably_damaging(0.96) TCGA-VS-A9UQ-01 3 49689401 49689401 C T BSN Silent p.D804D 0.17 TCGA-VS-A9UQ-01 5 176867818 176867818 C T GRK6 Missense_Mutation p.P508S 0.09 tolerated(1) benign(0.024) TCGA-VS-A9UQ-01 7 120629596 120629596 G A CPED1 5'UTR 0.32 TCGA-VS-A9UQ-01 7 150710243 150710243 G A ATG9B 3'UTR 0.24 TCGA-VS-A9UQ-01 7 27203249 27203249 G C HOXA9 Missense_Mutation p.I264M 0.13 tolerated(1) probably_damaging(0.979) TCGA-VS-A9UQ-01 X 100356086 100356086 C T CENPI Silent p.N9N 0.23 TCGA-VS-A9UQ-01 X 128939389 128939389 G T ZDHHC9 3'UTR 0.28 TCGA-VS-A9UQ-01 X 128939390 128939390 G T ZDHHC9 3'UTR 0.28 TCGA-VS-A9UQ-01 X 70613191 70613191 G A TAF1 Missense_Mutation p.R1051H 0.05 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UQ-01 X 92965169 92965169 C T FAM133A 3'UTR 0.16 TCGA-VS-A9UR-01 10 64975389 64975389 G C JMJD1C Missense_Mutation p.S249C 0.53 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UR-01 10 7618494 7618494 C A ITIH5 Nonsense_Mutation p.E634* 0.27 TCGA-VS-A9UR-01 11 103039585 103039585 G A DYNC2H1 Missense_Mutation p.E1622K 0.05 benign(0.016) TCGA-VS-A9UR-01 11 107462589 107462589 C T AP000889.3 Missense_Mutation p.R36W 0.08 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-VS-A9UR-01 11 108206586 108206586 G C ATM Silent p.L2722L 0.11 TCGA-VS-A9UR-01 11 118455274 118455274 G C ARCN1 Missense_Mutation p.E245Q 0.35 tolerated(0.07) possibly_damaging(0.677) TCGA-VS-A9UR-01 11 118964196 118964196 G C HMBS 3'UTR 0.57 TCGA-VS-A9UR-01 11 34181792 34181792 C T ABTB2 Intron 0.43 TCGA-VS-A9UR-01 11 45927511 45927511 G A MAPK8IP1 3'UTR 0.20 TCGA-VS-A9UR-01 11 46812110 46812110 C T CKAP5 Silent p.G558G 0.50 TCGA-VS-A9UR-01 11 60671005 60671005 C A PRPF19 Missense_Mutation p.A58S 0.39 tolerated(0.95) benign(0.001) TCGA-VS-A9UR-01 11 65306916 65306916 C G LTBP3 Missense_Mutation p.E1215Q 0.13 deleterious(0.01) possibly_damaging(0.545) TCGA-VS-A9UR-01 11 65635493 65635493 G A EFEMP2 Nonsense_Mutation p.R337* 0.47 TCGA-VS-A9UR-01 11 73103452 73103452 G A RELT Silent p.R188R 0.12 TCGA-VS-A9UR-01 12 114793357 114793357 C T TBX5 Missense_Mutation p.E513K 0.69 deleterious(0.01) possibly_damaging(0.521) TCGA-VS-A9UR-01 12 114836392 114836392 C G TBX5 Missense_Mutation p.D166H 0.66 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A9UR-01 12 121670846 121670846 G A P2RX4 Missense_Mutation p.R380K 0.77 tolerated(0.25) benign(0.004) TCGA-VS-A9UR-01 12 58216801 58216801 G A CTDSP2 3'UTR 0.50 TCGA-VS-A9UR-01 12 665937 665937 G C B4GALNT3 Missense_Mutation p.R762T 0.71 tolerated(0.12) possibly_damaging(0.826) TCGA-VS-A9UR-01 12 7528380 7528380 C T CD163L1 Missense_Mutation p.E868K 0.70 deleterious(0) probably_damaging(1) TCGA-VS-A9UR-01 12 89982077 89982077 T C ATP2B1 3'UTR 0.60 TCGA-VS-A9UR-01 12 96374353 96374353 G A HAL Silent p.H500H 0.56 TCGA-VS-A9UR-01 13 29600671 29600671 G A MTUS2 Silent p.Q622Q 0.43 TCGA-VS-A9UR-01 13 32912501 32912501 G A BRCA2 Missense_Mutation p.D1337N 0.39 tolerated(0.21) benign(0.023) TCGA-VS-A9UR-01 13 58299140 58299140 G A PCDH17 Silent p.L1064L 0.40 TCGA-VS-A9UR-01 14 101347776 101347776 C T RTL1 Missense_Mutation p.R1117Q 0.43 tolerated_low_confidence(0.34) benign(0.002) TCGA-VS-A9UR-01 14 101491941 101491941 C T MIR1197 RNA 0.34 TCGA-VS-A9UR-01 14 105408725 105408725 G C AHNAK2 Missense_Mutation p.L4355V 0.06 benign(0.327) TCGA-VS-A9UR-01 14 22447333 22447333 C T TRAV8-6 Missense_Mutation p.T105M 0.27 deleterious(0.02) benign(0.093) TCGA-VS-A9UR-01 14 23313874 23313874 G A MMP14 Missense_Mutation p.E396K 0.42 deleterious(0.02) possibly_damaging(0.713) TCGA-VS-A9UR-01 14 85996806 85996806 G A FLRT2 5'UTR 0.47 TCGA-VS-A9UR-01 14 95033575 95033575 G A SERPINA4 Silent p.R306R 0.47 TCGA-VS-A9UR-01 14 95934191 95934191 C - SYNE3 Frame_Shift_Del p.L87* 0.25 TCGA-VS-A9UR-01 15 24924572 24924572 T C NPAP1 3'UTR 0.41 TCGA-VS-A9UR-01 15 25490658 25490658 G A SNORD115-41 RNA 0.12 TCGA-VS-A9UR-01 15 26806292 26806292 G T GABRB3 Silent p.I289I 0.57 TCGA-VS-A9UR-01 15 42503209 42503209 A C TMEM87A 3'UTR 0.73 TCGA-VS-A9UR-01 15 42681122 42681147 TAAGGCTCCATGGTTCCTACGAAGCT C CAPN3 Splice_Site p.X211_splice 0.54 TCGA-VS-A9UR-01 15 57910273 57910273 C T MYZAP Nonsense_Mutation p.Q69* 0.04 TCGA-VS-A9UR-01 16 18573276 18573276 C G NOMO2 Silent p.A29A 0.30 TCGA-VS-A9UR-01 16 24965989 24965989 G A ARHGAP17 Missense_Mutation p.R263C 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A9UR-01 16 27237111 27237111 G A NSMCE1 Silent p.Y219Y 0.26 TCGA-VS-A9UR-01 16 32265024 32265024 C A TP53TG3D Missense_Mutation p.A117E 0.06 deleterious_low_confidence(0.04) benign(0.002) TCGA-VS-A9UR-01 16 56928534 56928534 G A SLC12A3 Silent p.R880R 0.59 TCGA-VS-A9UR-01 16 67179508 67179508 G A C16orf70 Silent p.V362V 0.64 TCGA-VS-A9UR-01 16 67296075 67296075 A G SLC9A5 Intron 0.41 TCGA-VS-A9UR-01 16 70507245 70507245 C T FUK Missense_Mutation p.T589M 0.50 tolerated(0.07) benign(0.063) TCGA-VS-A9UR-01 16 73127566 73127566 A G HCCAT5 RNA 0.33 TCGA-VS-A9UR-01 17 33328410 33328410 T C LIG3 Silent p.L822L 0.40 TCGA-VS-A9UR-01 17 39079155 39079155 C G KRT23 3'UTR 0.43 TCGA-VS-A9UR-01 17 39140180 39140180 C T KRT40 Missense_Mutation p.E116K 0.44 deleterious(0.01) benign(0.393) TCGA-VS-A9UR-01 17 39296572 39296572 G A KRTAP4-6 Silent p.C56C 0.28 TCGA-VS-A9UR-01 17 39675198 39675198 C T KRT15 5'UTR 0.50 TCGA-VS-A9UR-01 17 60059886 60059886 C A MED13 Nonsense_Mutation p.E1160* 0.24 TCGA-VS-A9UR-01 17 63898441 63898441 C T CEP112 Silent p.L664L 0.38 TCGA-VS-A9UR-01 17 7480384 7480384 C T EIF4A1 Silent p.Y175Y 0.25 TCGA-VS-A9UR-01 17 78306382 78306382 G C RNF213 Missense_Mutation p.S1365T 0.41 benign(0.002) TCGA-VS-A9UR-01 17 79172741 79172741 T C AZI1 Missense_Mutation p.D408G 0.38 tolerated(0.32) benign(0.013) TCGA-VS-A9UR-01 17 80320245 80320245 G T TEX19 Missense_Mutation p.Q73H 0.40 tolerated(0.08) benign(0.009) TCGA-VS-A9UR-01 19 10363094 10363094 G C MRPL4 Missense_Mutation p.E27Q 0.05 tolerated(0.14) benign(0.014) TCGA-VS-A9UR-01 19 14829406 14829406 G C ZNF333 Missense_Mutation p.E423Q 0.40 tolerated(0.16) possibly_damaging(0.728) TCGA-VS-A9UR-01 19 18731388 18731388 C T TMEM59L 3'UTR 0.33 TCGA-VS-A9UR-01 19 22235346 22235346 C G ZNF257 5'UTR 0.36 TCGA-VS-A9UR-01 19 36277922 36277922 C T ARHGAP33 Silent p.D689D 0.40 TCGA-VS-A9UR-01 19 36605940 36605940 C T POLR2I 5'UTR 0.50 TCGA-VS-A9UR-01 19 38210302 38210302 G A ZNF607 5'UTR 0.44 TCGA-VS-A9UR-01 19 43568630 43568630 G C PSG2 3'UTR 0.42 TCGA-VS-A9UR-01 19 48049189 48049189 G T ZNF541 Silent p.I199I 0.13 TCGA-VS-A9UR-01 19 48836432 48836432 G C TMEM143 3'UTR 0.33 TCGA-VS-A9UR-01 19 53911946 53911946 G C ZNF765 Missense_Mutation p.E380Q 0.41 deleterious(0.02) probably_damaging(0.964) TCGA-VS-A9UR-01 1 111146699 111146699 C G KCNA2 Missense_Mutation p.E236Q 0.21 deleterious(0) probably_damaging(0.986) TCGA-VS-A9UR-01 1 118042091 118042091 G A MAN1A2 Missense_Mutation p.R531H 0.41 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UR-01 1 120846095 120846095 G A FAM72B Missense_Mutation p.D111N 0.33 tolerated(0.15) benign(0.029) TCGA-VS-A9UR-01 1 1375982 1375982 C T VWA1 3'UTR 0.11 TCGA-VS-A9UR-01 1 142713710 142713710 C T RP11-417J8.6 RNA 0.36 TCGA-VS-A9UR-01 1 150241348 150241348 G A APH1A 5'UTR 0.27 TCGA-VS-A9UR-01 1 151204258 151204258 G C PIP5K1A Missense_Mutation p.E117Q 0.23 deleterious(0.01) possibly_damaging(0.558) TCGA-VS-A9UR-01 1 152785399 152785399 G A LCE1B 3'UTR 0.46 TCGA-VS-A9UR-01 1 152800093 152800093 G A LCE1A Missense_Mutation p.G49R 0.39 deleterious_low_confidence(0) unknown(0) TCGA-VS-A9UR-01 1 155290737 155290737 G A RUSC1 5'UTR 0.22 TCGA-VS-A9UR-01 1 156902282 156902282 C G LRRC71 Missense_Mutation p.S503C 0.41 deleterious(0.01) possibly_damaging(0.717) TCGA-VS-A9UR-01 1 1573228 1573228 T C CDK11B Missense_Mutation p.K457E 0.41 unknown(0) TCGA-VS-A9UR-01 1 161993217 161993217 C T OLFML2B Missense_Mutation p.A2T 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-VS-A9UR-01 1 185986181 185986181 G T HMCN1 Missense_Mutation p.G1760C 0.40 probably_damaging(1) TCGA-VS-A9UR-01 1 237868532 237868532 G T RYR2 Nonsense_Mutation p.E3157* 0.30 TCGA-VS-A9UR-01 1 242687579 242687579 C T PLD5 5'UTR 0.44 TCGA-VS-A9UR-01 1 36319339 36319339 G A AGO4 3'UTR 0.38 TCGA-VS-A9UR-01 1 36773991 36773991 C T SH3D21 Missense_Mutation p.T214I 0.07 tolerated(0.06) possibly_damaging(0.81) TCGA-VS-A9UR-01 1 43777421 43777421 C G TIE1 Missense_Mutation p.F471L 0.14 tolerated(0.11) benign(0.249) TCGA-VS-A9UR-01 1 62327226 62327226 G C INADL Missense_Mutation p.D776H 0.31 deleterious(0.01) possibly_damaging(0.491) TCGA-VS-A9UR-01 1 76255169 76255169 G A RABGGTB Intron 0.36 TCGA-VS-A9UR-01 1 77747875 77747875 C T AK5 5'UTR 0.44 TCGA-VS-A9UR-01 1 92495747 92495747 C T EPHX4 Silent p.L37L 0.31 TCGA-VS-A9UR-01 1 92495836 92495836 C A EPHX4 Missense_Mutation p.S67Y 0.30 deleterious(0.01) benign(0.117) TCGA-VS-A9UR-01 20 35632175 35632175 G A RBL1 Missense_Mutation p.P989L 0.26 tolerated(0.13) probably_damaging(1) TCGA-VS-A9UR-01 20 36856586 36856586 G T KIAA1755 Missense_Mutation p.P643Q 0.41 deleterious(0.02) possibly_damaging(0.658) TCGA-VS-A9UR-01 20 37380900 37380900 G A ACTR5 Silent p.E244E 0.47 TCGA-VS-A9UR-01 20 39831489 39831489 C T ZHX3 Missense_Mutation p.E690K 0.44 tolerated(0.45) benign(0.097) TCGA-VS-A9UR-01 21 30961287 30961287 C G GRIK1 Missense_Mutation p.D481H 0.30 deleterious(0) probably_damaging(1) TCGA-VS-A9UR-01 21 30961311 30961311 C G GRIK1 Missense_Mutation p.D473H 0.32 deleterious(0) possibly_damaging(0.678) TCGA-VS-A9UR-01 21 47817184 47817184 C T PCNT Missense_Mutation p.R1408W 0.59 benign(0) TCGA-VS-A9UR-01 22 24837209 24837209 G A ADORA2A Missense_Mutation p.G331R 0.34 tolerated(0.2) benign(0.054) TCGA-VS-A9UR-01 22 38902081 38902081 G A DDX17 Silent p.V54V 0.50 TCGA-VS-A9UR-01 22 43830986 43830986 C A MPPED1 Missense_Mutation p.P86H 0.38 deleterious(0.02) probably_damaging(0.956) TCGA-VS-A9UR-01 2 109092295 109092295 G C GCC2 Missense_Mutation p.E1017Q 0.10 deleterious(0) probably_damaging(0.994) TCGA-VS-A9UR-01 2 120714635 120714635 C A PTPN4 Silent p.I705I 0.09 TCGA-VS-A9UR-01 2 128466379 128466379 G A WDR33 Missense_Mutation p.S1218F 0.34 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-VS-A9UR-01 2 130897931 130897931 C T CCDC74B Missense_Mutation p.E233K 0.27 tolerated(0.14) benign(0.136) TCGA-VS-A9UR-01 2 176983970 176983970 G T HOXD10 3'UTR 0.39 TCGA-VS-A9UR-01 2 179664216 179664216 G A TTN Silent p.V304V 0.28 TCGA-VS-A9UR-01 2 208631288 208631288 A T FZD5 3'UTR 0.09 TCGA-VS-A9UR-01 2 231191941 231191941 C T SP140L 5'UTR 0.44 TCGA-VS-A9UR-01 2 241814597 241814597 G A AGXT Nonsense_Mutation p.W251* 0.69 TCGA-VS-A9UR-01 2 42558433 42558433 C T EML4 3'UTR 0.40 TCGA-VS-A9UR-01 2 70995183 70995183 C T ADD2 5'UTR 0.39 TCGA-VS-A9UR-01 2 73651598 73651598 C T ALMS1 Nonsense_Mutation p.R269* 0.07 TCGA-VS-A9UR-01 2 9558799 9558806 TGTGTCGT - ITGB1BP1 Frame_Shift_Del p.R8* 0.23 TCGA-VS-A9UR-01 3 11848863 11848863 G A TAMM41 Intron 0.59 TCGA-VS-A9UR-01 3 133497526 133497526 C T TF 3'UTR 0.08 TCGA-VS-A9UR-01 3 167045779 167045779 G A ZBBX Silent p.T271T 0.37 TCGA-VS-A9UR-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.36 deleterious(0.02) probably_damaging(0.959) TCGA-VS-A9UR-01 3 194125021 194125021 C T ATP13A3 3'UTR 0.39 TCGA-VS-A9UR-01 3 30715739 30715739 G A TGFBR2 Splice_Site p.X491_splice 0.59 TCGA-VS-A9UR-01 3 33099665 33099665 G A GLB1 Silent p.L217L 0.30 TCGA-VS-A9UR-01 4 103534690 103534690 C G NFKB1 Missense_Mutation p.Q901E 0.34 tolerated(0.45) benign(0.005) TCGA-VS-A9UR-01 4 119444587 119444587 G A CEP170P1 RNA 0.35 TCGA-VS-A9UR-01 4 145659493 145659493 G C HHIP 3'UTR 0.34 TCGA-VS-A9UR-01 4 146057933 146057933 G C OTUD4 3'UTR 0.39 TCGA-VS-A9UR-01 4 152498631 152498631 C A FAM160A1 Silent p.P45P 0.11 TCGA-VS-A9UR-01 4 156296937 156296937 A T MAP9 Silent p.T22T 0.34 TCGA-VS-A9UR-01 4 160264195 160264195 G A RAPGEF2 Missense_Mutation p.E834K 0.31 tolerated(0.08) possibly_damaging(0.599) TCGA-VS-A9UR-01 4 24543539 24543539 C A DHX15 Missense_Mutation p.C481F 0.11 deleterious(0) probably_damaging(0.944) TCGA-VS-A9UR-01 4 52917914 52917914 G A SPATA18 Missense_Mutation p.R15Q 0.31 tolerated(0.26) benign(0.005) TCGA-VS-A9UR-01 4 89618395 89618395 C T NAP1L5 Missense_Mutation p.D171N 0.31 tolerated_low_confidence(0.14) unknown(0) TCGA-VS-A9UR-01 5 112769708 112769708 G A TSSK1B Missense_Mutation p.R277W 0.36 deleterious(0.04) benign(0.006) TCGA-VS-A9UR-01 5 114951359 114951359 C G TMED7 3'UTR 0.06 TCGA-VS-A9UR-01 5 133707210 133707210 C T UBE2B 5'UTR 0.53 TCGA-VS-A9UR-01 5 135288599 135288599 G A LECT2 Missense_Mutation p.T35M 0.10 deleterious(0.04) benign(0.013) TCGA-VS-A9UR-01 5 140554977 140554977 G T PCDHB7 3'UTR 0.14 TCGA-VS-A9UR-01 5 140756026 140756026 G A PCDHGA6 Silent p.L792L 0.47 TCGA-VS-A9UR-01 5 147889123 147889123 G T HTR4 Silent p.L324L 0.44 TCGA-VS-A9UR-01 5 150410188 150410188 C A TNIP1 3'UTR 0.48 TCGA-VS-A9UR-01 5 169503080 169503080 C T DOCK2 Nonsense_Mutation p.R1620* 0.29 TCGA-VS-A9UR-01 5 90086887 90086887 G C GPR98 Missense_Mutation p.K4747N 0.06 benign(0.066) TCGA-VS-A9UR-01 6 132649596 132649596 G A MOXD1 Silent p.L267L 0.08 TCGA-VS-A9UR-01 6 144145394 144145394 C T PHACTR2 3'Flank 0.40 TCGA-VS-A9UR-01 6 152804295 152804295 C T SYNE1 Silent p.L425L 0.42 TCGA-VS-A9UR-01 6 169626395 169626395 T G THBS2 Splice_Site p.X807_splice 0.40 TCGA-VS-A9UR-01 6 24781767 24781767 C A GMNN Missense_Mutation p.S64R 0.09 tolerated(0.29) benign(0.038) TCGA-VS-A9UR-01 6 26225665 26225665 G A HIST1H3E Missense_Mutation p.E95K 0.07 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VS-A9UR-01 6 30919979 30919979 C T DPCR1 Silent p.V1246V 0.48 TCGA-VS-A9UR-01 6 31239423 31239423 C G HLA-C Missense_Mutation p.R99P 0.12 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-VS-A9UR-01 6 31239484 31239484 C T HLA-C Missense_Mutation p.E79K 0.12 deleterious_low_confidence(0.01) benign(0.053) TCGA-VS-A9UR-01 6 31239576 31239576 G A HLA-C Missense_Mutation p.S48L 0.10 deleterious_low_confidence(0.03) benign(0.402) TCGA-VS-A9UR-01 6 3272553 3272553 C A SLC22A23 3'UTR 0.48 TCGA-VS-A9UR-01 6 33393601 33393601 G A SYNGAP1 Silent p.R72R 0.35 TCGA-VS-A9UR-01 6 64394588 64394588 C T PHF3 Missense_Mutation p.S322L 0.35 deleterious_low_confidence(0) benign(0.002) TCGA-VS-A9UR-01 6 73843311 73843311 G A KCNQ5 Missense_Mutation p.R491H 0.37 deleterious(0) benign(0.427) TCGA-VS-A9UR-01 6 88853549 88853549 C A CNR1 3'UTR 0.45 TCGA-VS-A9UR-01 7 132192515 132192515 G C PLXNA4 Missense_Mutation p.A313G 0.62 tolerated(0.05) probably_damaging(0.999) TCGA-VS-A9UR-01 7 150767341 150767341 C T SLC4A2 Missense_Mutation p.H453Y 0.62 tolerated(0.15) benign(0.129) TCGA-VS-A9UR-01 7 28997844 28997844 C T AC005013.5 Intron 0.48 TCGA-VS-A9UR-01 7 45614656 45614656 G A ADCY1 Missense_Mutation p.V172M 0.33 tolerated(0.18) benign(0.341) TCGA-VS-A9UR-01 7 5105790 5105790 G A RBAK 3'UTR 0.32 TCGA-VS-A9UR-01 7 57187412 57187412 C A ZNF479 3'UTR 0.11 TCGA-VS-A9UR-01 7 80433459 80433459 G A SEMA3C Missense_Mutation p.T255M 0.35 tolerated(0.11) probably_damaging(0.999) TCGA-VS-A9UR-01 7 86990764 86990764 A G CROT Missense_Mutation p.N128S 0.17 tolerated(0.25) benign(0.158) TCGA-VS-A9UR-01 7 97822394 97822394 G A LMTK2 Missense_Mutation p.D873N 0.38 tolerated(0.46) benign(0.005) TCGA-VS-A9UR-01 8 101051234 101051234 C T RGS22 Nonsense_Mutation p.W697* 0.41 TCGA-VS-A9UR-01 8 123794019 123794019 T G ZHX2 5'UTR 0.17 TCGA-VS-A9UR-01 8 133858282 133858282 G A PHF20L1 3'UTR 0.44 TCGA-VS-A9UR-01 8 133858477 133858477 G A PHF20L1 3'UTR 0.38 TCGA-VS-A9UR-01 8 142367375 142367375 C A GPR20 Missense_Mutation p.G217C 0.42 tolerated(0.15) probably_damaging(0.984) TCGA-VS-A9UR-01 8 24348340 24348340 A G ADAM7 Missense_Mutation p.H432R 0.36 tolerated(0.26) benign(0.015) TCGA-VS-A9UR-01 8 28203226 28203226 G T ZNF395 3'UTR 0.34 TCGA-VS-A9UR-01 8 28384824 28384824 C T FZD3 Missense_Mutation p.R183C 0.39 deleterious(0.01) possibly_damaging(0.732) TCGA-VS-A9UR-01 8 41367246 41367246 A G GOLGA7 3'UTR 0.43 TCGA-VS-A9UR-01 8 41788297 41788297 G A KAT6A 3'UTR 0.43 TCGA-VS-A9UR-01 8 54900802 54900802 A T TCEA1 Missense_Mutation p.V113E 0.33 tolerated(1) benign(0.001) TCGA-VS-A9UR-01 8 86038967 86038967 G C LRRCC1 Missense_Mutation p.R439T 0.29 deleterious(0) benign(0.098) TCGA-VS-A9UR-01 9 138715851 138715851 G A CAMSAP1 Nonsense_Mutation p.R449* 0.45 TCGA-VS-A9UR-01 X 101908844 101908844 G A GPRASP1 Translation_Start_Site p.M1? 0.43 deleterious(0) probably_damaging(0.992) TCGA-VS-A9UR-01 X 102471120 102471120 C T BEX4 Silent p.N13N 0.10 TCGA-VS-A9UR-01 X 114953418 114953418 C T RP1-241P17.4 Missense_Mutation p.M44I 0.07 tolerated(0.1) possibly_damaging(0.789) TCGA-VS-A9UR-01 X 122766766 122766766 G C THOC2 Missense_Mutation p.I754M 0.38 deleterious(0) benign(0.15) TCGA-VS-A9UR-01 X 135314122 135314122 C T MAP7D3 Missense_Mutation p.E332K 0.28 tolerated(0.32) benign(0.135) TCGA-VS-A9UR-01 X 152612475 152612475 G A ZNF275 Missense_Mutation p.R111Q 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A9UR-01 X 154014641 154014641 T A MPP1 Missense_Mutation p.K172I 0.21 tolerated(0.19) benign(0.107) TCGA-VS-A9UR-01 X 37028630 37028630 C T FAM47C Missense_Mutation p.A716V 0.41 tolerated(0.23) benign(0.004) TCGA-VS-A9UR-01 X 73753400 73753400 G A SLC16A2 3'UTR 0.29 TCGA-VS-A9UR-01 X 76711925 76711925 G A FGF16 Missense_Mutation p.R88Q 0.60 benign(0.048) TCGA-VS-A9UR-01 X 84363873 84363873 C A SATL1 Missense_Mutation p.M34I 0.36 tolerated(0.93) benign(0.043) TCGA-VS-A9UR-01 X 91090981 91090981 C T PCDH11X Missense_Mutation p.L160F 0.05 deleterious(0.02) probably_damaging(0.925) TCGA-VS-A9UR-01 X 91090983 91090983 C T PCDH11X Silent p.L160L 0.05 TCGA-VS-A9UT-01 10 106907398 106907398 C T SORCS3 Silent p.D442D 0.23 TCGA-VS-A9UT-01 10 48370652 48370652 G A ZNF488 Silent p.E40E 0.17 TCGA-VS-A9UT-01 10 79601740 79601740 G A DLG5 Silent p.L446L 0.30 TCGA-VS-A9UT-01 11 111626052 111626052 G A PPP2R1B Silent p.R270R 0.20 TCGA-VS-A9UT-01 11 3109030 3109031 - GCTCCCTGGCT OSBPL5 3'UTR 0.57 TCGA-VS-A9UT-01 11 47660346 47660347 - A MTCH2 Frame_Shift_Ins p.A62Cfs*29 0.19 TCGA-VS-A9UT-01 11 55703498 55703498 C T OR5I1 Missense_Mutation p.A127T 0.26 deleterious(0.01) benign(0.008) TCGA-VS-A9UT-01 11 56086527 56086527 G T OR8K3 Missense_Mutation p.V249L 0.22 tolerated_low_confidence(0.06) benign(0.211) TCGA-VS-A9UT-01 11 64537484 64537484 T G SF1 Missense_Mutation p.Q269P 0.18 tolerated(0.22) probably_damaging(0.997) TCGA-VS-A9UT-01 12 106632782 106632782 G A CKAP4 3'UTR 0.16 TCGA-VS-A9UT-01 12 57995502 57995502 G A PIP4K2C 3'UTR 0.27 TCGA-VS-A9UT-01 14 23389942 23389942 T A PRMT5 3'UTR 0.24 TCGA-VS-A9UT-01 14 45542787 45542787 A G FAM179B 3'UTR 0.16 TCGA-VS-A9UT-01 14 47426709 47426709 G A MDGA2 Missense_Mutation p.R653W 0.30 deleterious(0.01) possibly_damaging(0.849) TCGA-VS-A9UT-01 16 1278457 1278457 G A TPSB2 3'UTR 0.44 TCGA-VS-A9UT-01 17 61949543 61949543 G A CSH2 Silent p.V199V 0.20 TCGA-VS-A9UT-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.21 TCGA-VS-A9UT-01 18 59922664 59922664 C T KIAA1468 Nonsense_Mutation p.R617* 0.10 TCGA-VS-A9UT-01 19 33088169 33088169 A T ANKRD27 3'UTR 0.26 TCGA-VS-A9UT-01 19 41939197 41939197 G A ATP5SL Silent p.L198L 0.24 TCGA-VS-A9UT-01 19 52716323 52716323 C A PPP2R1A Missense_Mutation p.S256Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UT-01 1 227172603 227172603 G A ADCK3 Silent p.T511T 0.20 TCGA-VS-A9UT-01 1 915297 915297 C A C1orf170 Silent p.T277T 0.15 TCGA-VS-A9UT-01 20 31649602 31649602 G A BPIFB3 Missense_Mutation p.V186M 0.32 deleterious(0) possibly_damaging(0.861) TCGA-VS-A9UT-01 20 33444688 33444688 G A GGT7 Silent p.H341H 0.16 TCGA-VS-A9UT-01 20 55748100 55748100 T A BMP7 Intron 0.41 TCGA-VS-A9UT-01 21 30716991 30716991 A G BACH1 3'UTR 0.21 TCGA-VS-A9UT-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.30 TCGA-VS-A9UT-01 22 26118329 26118329 G A ADRBK2 Missense_Mutation p.R660H 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.644) TCGA-VS-A9UT-01 2 141625247 141625247 C A LRP1B Missense_Mutation p.K1497N 0.23 benign(0.013) TCGA-VS-A9UT-01 2 163027225 163027225 C A FAP 3'UTR 0.13 TCGA-VS-A9UT-01 2 163128804 163128804 G A IFIH1 Nonsense_Mutation p.R850* 0.14 TCGA-VS-A9UT-01 2 1895961 1895961 C T MYT1L Missense_Mutation p.A709T 0.17 tolerated(0.67) benign(0.147) TCGA-VS-A9UT-01 2 54873372 54873372 C T SPTBN1 Silent p.D1542D 0.17 TCGA-VS-A9UT-01 3 108855743 108855743 G A RP11-59E19.1 Intron 0.22 TCGA-VS-A9UT-01 3 178916929 178916929 G C PIK3CA Missense_Mutation p.G106R 0.15 deleterious(0.01) probably_damaging(1) TCGA-VS-A9UT-01 3 178927974 178927974 G A PIK3CA Missense_Mutation p.E418K 0.18 tolerated(0.06) possibly_damaging(0.886) TCGA-VS-A9UT-01 3 187443373 187443373 G A BCL6 Missense_Mutation p.R585W 0.19 deleterious(0) possibly_damaging(0.879) TCGA-VS-A9UT-01 3 51349506 51349506 T C DOCK3 Missense_Mutation p.F1030S 0.32 tolerated(0.49) probably_damaging(0.959) TCGA-VS-A9UT-01 4 130027752 130027752 A G C4orf33 Silent p.A64A 0.23 TCGA-VS-A9UT-01 5 141532435 141532435 G A NDFIP1 3'UTR 0.14 TCGA-VS-A9UT-01 5 14508786 14508786 C G TRIO 3'UTR 0.25 TCGA-VS-A9UT-01 5 176931133 176931133 T C DOK3 Missense_Mutation p.T448A 0.47 tolerated(0.08) benign(0.005) TCGA-VS-A9UT-01 6 42986708 42986708 A C KLHDC3 Missense_Mutation p.S310R 0.16 tolerated(0.07) probably_damaging(0.99) TCGA-VS-A9UT-01 7 45005432 45005432 G A MYO1G Missense_Mutation p.R729C 0.17 deleterious(0) possibly_damaging(0.487) TCGA-VS-A9UT-01 7 4714932 4714932 A G FOXK1 Missense_Mutation p.Y16C 0.22 deleterious(0.01) benign(0.06) TCGA-VS-A9UT-01 8 25149596 25149596 G A DOCK5 Silent p.E126E 0.18 TCGA-VS-A9UT-01 8 93898810 93898810 C T TRIQK 3'UTR 0.20 TCGA-VS-A9UT-01 X 55117022 55117022 C T PAGE2 Nonsense_Mutation p.Q58* 0.23 TCGA-VS-A9UT-01 X 73041179 73041179 A T XIST RNA 0.06 TCGA-VS-A9UU-01 10 124600726 124600726 G T CUZD1 Missense_Mutation p.N67K 0.20 deleterious(0) probably_damaging(0.914) TCGA-VS-A9UU-01 10 5042606 5042606 G C AKR1C2 Intron 0.09 TCGA-VS-A9UU-01 10 84733627 84733627 G A NRG3 Silent p.E456E 0.12 TCGA-VS-A9UU-01 10 94268524 94268524 C T IDE Missense_Mutation p.E341K 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A9UU-01 11 1262190 1262190 G A MUC5B Silent p.T1360T 0.13 TCGA-VS-A9UU-01 11 64627721 64627721 G A EHD1 Missense_Mutation p.S197F 0.18 deleterious(0) probably_damaging(0.992) TCGA-VS-A9UU-01 11 824018 824018 G C PNPLA2 Missense_Mutation p.E314Q 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-VS-A9UU-01 11 95516367 95516367 G A FAM76B Missense_Mutation p.T142M 0.13 deleterious(0) probably_damaging(0.977) TCGA-VS-A9UU-01 12 112677036 112677036 C T HECTD4 Missense_Mutation p.E1558K 0.15 possibly_damaging(0.696) TCGA-VS-A9UU-01 12 123641404 123641404 G A MPHOSPH9 Missense_Mutation p.R1016C 0.22 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UU-01 12 20522921 20522921 G A PDE3A Missense_Mutation p.A235T 0.33 tolerated(0.2) benign(0.005) TCGA-VS-A9UU-01 12 55420303 55420303 C T NEUROD4 Missense_Mutation p.S27F 0.16 deleterious(0) possibly_damaging(0.855) TCGA-VS-A9UU-01 12 64173894 64173894 G C TMEM5 Missense_Mutation p.E52Q 0.24 tolerated(0.39) benign(0.277) TCGA-VS-A9UU-01 12 81741515 81741515 G A PPFIA2 Missense_Mutation p.R677C 0.21 deleterious(0) probably_damaging(0.992) TCGA-VS-A9UU-01 13 21548021 21548021 C T LATS2 3'UTR 0.24 TCGA-VS-A9UU-01 14 105857981 105857981 C T PACS2 Silent p.D711D 0.16 TCGA-VS-A9UU-01 14 23817743 23817743 C T SLC22A17 Missense_Mutation p.A222T 0.09 tolerated(0.15) probably_damaging(0.965) TCGA-VS-A9UU-01 14 23855650 23855650 G A MYH6 Silent p.N1611N 0.43 TCGA-VS-A9UU-01 14 94401029 94401029 T C ASB2 Silent p.R627R 0.13 TCGA-VS-A9UU-01 14 95569799 95569799 G A DICER1 Silent p.L1312L 0.32 TCGA-VS-A9UU-01 15 75311646 75311646 C T SCAMP5 3'UTR 0.13 TCGA-VS-A9UU-01 15 75501091 75501091 C T C15orf39 Missense_Mutation p.A901V 0.18 deleterious(0) probably_damaging(0.941) TCGA-VS-A9UU-01 15 90764645 90764645 C T SEMA4B Silent p.D214D 0.21 TCGA-VS-A9UU-01 16 15689941 15689941 G A KIAA0430 3'UTR 0.17 TCGA-VS-A9UU-01 17 10303799 10303799 G A MYH8 Missense_Mutation p.R1215W 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-VS-A9UU-01 17 12899111 12899111 G A ELAC2 Missense_Mutation p.L573F 0.19 tolerated(0.9) benign(0.001) TCGA-VS-A9UU-01 17 27064528 27064528 C T NEK8 Missense_Mutation p.R275W 0.21 tolerated(0.11) possibly_damaging(0.462) TCGA-VS-A9UU-01 17 32961925 32961925 C T TMEM132E Missense_Mutation p.T509I 0.16 deleterious(0) probably_damaging(0.973) TCGA-VS-A9UU-01 17 74077152 74077152 T C EXOC7 3'Flank 0.19 TCGA-VS-A9UU-01 17 7611350 7611350 G A EFNB3 Missense_Mutation p.R66Q 0.08 tolerated(0.16) benign(0.068) TCGA-VS-A9UU-01 17 76201782 76201782 C T AFMID Missense_Mutation p.S248F 0.14 deleterious(0) probably_damaging(0.979) TCGA-VS-A9UU-01 17 8135125 8135125 G C CTC1 Silent p.L798L 0.21 TCGA-VS-A9UU-01 18 72775294 72775294 G A ZNF407 Missense_Mutation p.D1873N 0.09 tolerated(0.06) benign(0.013) TCGA-VS-A9UU-01 19 10401842 10401842 C T ICAM5 Silent p.C59C 0.31 TCGA-VS-A9UU-01 19 48613931 48613931 T C PLA2G4C 5'UTR 0.14 TCGA-VS-A9UU-01 19 51214668 51214668 G A SHANK1 Missense_Mutation p.S346L 0.20 possibly_damaging(0.615) TCGA-VS-A9UU-01 19 51361775 51361775 C T KLK3 Missense_Mutation p.A185V 0.25 tolerated(0.26) benign(0.025) TCGA-VS-A9UU-01 19 55874500 55874500 C T FAM71E2 5'UTR 0.09 TCGA-VS-A9UU-01 19 58640848 58640848 C T ZNF329 Missense_Mutation p.R8Q 0.27 tolerated(1) benign(0) TCGA-VS-A9UU-01 1 1169972 1169972 C G B3GALT6 3'UTR 0.12 TCGA-VS-A9UU-01 1 12855777 12855777 A G PRAMEF1 Missense_Mutation p.T353A 0.10 tolerated(0.76) possibly_damaging(0.513) TCGA-VS-A9UU-01 1 149754454 149754454 C T HIST2H2BF 3'UTR 0.16 TCGA-VS-A9UU-01 1 166039839 166039839 A C FAM78B Missense_Mutation p.F142C 0.11 deleterious(0) benign(0.021) TCGA-VS-A9UU-01 1 207812772 207812772 G A CR1 3'Flank 0.34 TCGA-VS-A9UU-01 1 2283306 2283306 G A MORN1 Intron 0.13 TCGA-VS-A9UU-01 1 231042670 231042670 C T TTC13 Missense_Mutation p.R855H 0.14 tolerated_low_confidence(0.68) benign(0.001) TCGA-VS-A9UU-01 1 233388241 233388241 G A PCNXL2 Nonsense_Mutation p.Q663* 0.21 TCGA-VS-A9UU-01 1 240255998 240255998 T C FMN2 Missense_Mutation p.S197P 0.12 unknown(0) TCGA-VS-A9UU-01 1 248813788 248813788 G A OR2T27 Missense_Mutation p.P133L 0.16 deleterious(0.03) benign(0.12) TCGA-VS-A9UU-01 1 47765593 47765593 C T STIL Missense_Mutation p.G229R 0.14 deleterious(0) probably_damaging(0.992) TCGA-VS-A9UU-01 20 21687652 21687652 C T PAX1 Missense_Mutation p.S288L 0.27 deleterious(0) probably_damaging(0.981) TCGA-VS-A9UU-01 20 57599749 57599749 C T TUBB1 Nonsense_Mutation p.Q423* 0.36 TCGA-VS-A9UU-01 20 585252 585252 G A TCF15 Nonsense_Mutation p.R195* 0.13 TCGA-VS-A9UU-01 21 41719802 41719802 G A DSCAM Silent p.C335C 0.32 TCGA-VS-A9UU-01 22 21178677 21178677 G A PI4KA Silent p.F131F 0.17 TCGA-VS-A9UU-01 22 49146111 49146111 C T FAM19A5 3'UTR 0.09 TCGA-VS-A9UU-01 2 167055649 167055649 C T SCN9A Missense_Mutation p.D1823N 0.11 deleterious(0.02) probably_damaging(1) TCGA-VS-A9UU-01 2 232030607 232030607 A G PSMD1 Missense_Mutation p.E864G 0.15 tolerated(0.21) benign(0.003) TCGA-VS-A9UU-01 2 241530314 241530314 G A CAPN10 Nonsense_Mutation p.W119* 0.12 TCGA-VS-A9UU-01 2 5838174 5838174 A T SOX11 3'UTR 0.15 TCGA-VS-A9UU-01 4 114275231 114275231 G A ANK2 Silent p.A1819A 0.15 TCGA-VS-A9UU-01 4 154626373 154626373 G C TLR2 Missense_Mutation p.E772Q 0.18 tolerated(0.55) benign(0.057) TCGA-VS-A9UU-01 4 6884348 6884348 G T KIAA0232 3'UTR 0.33 TCGA-VS-A9UU-01 4 8479876 8479876 C T TRMT44 3'Flank 0.09 TCGA-VS-A9UU-01 4 87692528 87692529 AT - PTPN13 Frame_Shift_Del p.S1676Kfs*24 0.17 TCGA-VS-A9UU-01 5 123976943 123976943 A C ZNF608 Splice_Site p.X1484_splice 0.15 TCGA-VS-A9UU-01 5 140214511 140214511 C T PCDHA7 Silent p.D181D 0.16 TCGA-VS-A9UU-01 5 140517050 140517050 C T PCDHB5 Silent p.A678A 0.19 TCGA-VS-A9UU-01 5 140626925 140626925 C T PCDHB15 Silent p.D593D 0.11 TCGA-VS-A9UU-01 5 156736778 156736778 G A CYFIP2 Missense_Mutation p.D284N 0.40 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UU-01 5 162871787 162871787 G C CCNG1 3'UTR 0.26 TCGA-VS-A9UU-01 5 169533522 169533522 C T FOXI1 Silent p.D187D 0.39 TCGA-VS-A9UU-01 5 179275033 179275033 G A C5orf45 Missense_Mutation p.R54C 0.23 deleterious(0.01) possibly_damaging(0.76) TCGA-VS-A9UU-01 5 76028458 76028458 G A F2R Silent p.P136P 0.17 TCGA-VS-A9UU-01 5 78324315 78324315 T C DMGDH Missense_Mutation p.Q658R 0.27 tolerated(0.35) benign(0.012) TCGA-VS-A9UU-01 5 78340363 78340363 C T DMGDH Missense_Mutation p.R253H 0.16 tolerated(0.24) benign(0.089) TCGA-VS-A9UU-01 6 33147562 33147562 C A COL11A2 Silent p.G374G 0.17 TCGA-VS-A9UU-01 6 51503723 51503723 A C PKHD1 Nonsense_Mutation p.Y3810* 0.13 TCGA-VS-A9UU-01 7 128767555 128767555 G A RP11-286H14.4 RNA 0.19 TCGA-VS-A9UU-01 7 138235823 138235823 C T TRIM24 Missense_Mutation p.R387W 0.12 deleterious(0) possibly_damaging(0.776) TCGA-VS-A9UU-01 7 149504081 149504081 T C SSPO Splice_Site 0.33 TCGA-VS-A9UU-01 7 27211703 27211703 C T HOXA10 Missense_Mutation p.E350K 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A9UU-01 8 125072866 125072866 C T FER1L6 Silent p.C1021C 0.22 TCGA-VS-A9UU-01 8 1951749 1951749 T G KBTBD11 3'UTR 0.11 TCGA-VS-A9UU-01 8 27462569 27462569 G A CLU Missense_Mutation p.P234L 0.07 tolerated(0.68) benign(0.007) TCGA-VS-A9UU-01 8 35563461 35563461 C G UNC5D Missense_Mutation p.H367D 0.35 tolerated(0.68) possibly_damaging(0.649) TCGA-VS-A9UU-01 9 100617235 100617235 G A FOXE1 Missense_Mutation p.G347R 0.10 deleterious(0) probably_damaging(0.98) TCGA-VS-A9UU-01 9 104449173 104449173 G A GRIN3A Missense_Mutation p.R337W 0.07 deleterious(0.02) possibly_damaging(0.614) TCGA-VS-A9UU-01 9 135073897 135073897 G A NTNG2 Missense_Mutation p.R253H 0.16 deleterious(0) probably_damaging(0.992) TCGA-VS-A9UU-01 X 125954910 125954910 C G CXorf64 Missense_Mutation p.P97A 0.14 deleterious(0.02) probably_damaging(0.97) TCGA-VS-A9UU-01 X 129801626 129801626 G C ENOX2 Missense_Mutation p.S291C 0.34 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UU-01 X 134983742 134983742 C T SAGE1 Silent p.L38L 0.18 TCGA-VS-A9UU-01 X 47755284 47755284 G A ZNF81 Silent p.E74E 0.18 TCGA-VS-A9UU-01 X 48783145 48783145 C T OTUD5 Missense_Mutation p.R419H 0.14 tolerated(0.06) benign(0.043) TCGA-VS-A9UU-01 X 49031944 49031944 G A PRICKLE3 3'UTR 0.08 TCGA-VS-A9UU-01 X 53560102 53560104 GAG - HUWE1 3'UTR 0.12 TCGA-VS-A9UU-01 X 54224896 54224896 A G WNK3 Missense_Mutation p.V1755A 0.18 tolerated_low_confidence(0.13) benign(0.008) TCGA-VS-A9UU-01 X 69640635 69640635 A C KIF4A 3'UTR 0.19 TCGA-VS-A9UU-01 X 71351177 71351177 C T RGAG4 Missense_Mutation p.A72T 0.14 deleterious_low_confidence(0.01) benign(0.005) TCGA-VS-A9UU-01 X 77913810 77913810 C A ZCCHC5 Missense_Mutation p.Q36H 0.32 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-VS-A9UV-01 10 14951099 14951101 CTT - DCLRE1C In_Frame_Del p.E462del 0.45 TCGA-VS-A9UV-01 10 47158747 47158747 C T ANXA8L1 3'UTR 0.46 TCGA-VS-A9UV-01 10 70673820 70673820 G A DDX50 Missense_Mutation p.E317K 0.04 tolerated(0.07) benign(0.444) TCGA-VS-A9UV-01 10 89727216 89727216 G C PTEN 3'UTR 0.98 TCGA-VS-A9UV-01 10 89727519 89727519 C G PTEN 3'UTR 0.94 TCGA-VS-A9UV-01 11 124946729 124946729 G A SLC37A2 Missense_Mutation p.V46I 0.80 deleterious(0.01) benign(0.321) TCGA-VS-A9UV-01 11 133791225 133791225 C T IGSF9B Missense_Mutation p.D799N 0.77 tolerated(0.07) possibly_damaging(0.689) TCGA-VS-A9UV-01 11 19186634 19186634 A C ZDHHC13 Silent p.V444V 0.86 TCGA-VS-A9UV-01 11 44952371 44952371 G A TSPAN18 3'UTR 0.78 TCGA-VS-A9UV-01 11 56380223 56380223 A G OR5M1 Silent p.Y252Y 0.88 TCGA-VS-A9UV-01 11 62299427 62299427 G A AHNAK Missense_Mutation p.P821L 0.88 possibly_damaging(0.664) TCGA-VS-A9UV-01 11 64034865 64034865 C T PLCB3 Missense_Mutation p.A1181V 0.90 tolerated(0.08) benign(0.105) TCGA-VS-A9UV-01 11 65563510 65563510 A T OVOL1 3'UTR 0.09 TCGA-VS-A9UV-01 12 130827557 130827557 A G PIWIL1 Missense_Mutation p.Q34R 0.37 tolerated(0.44) benign(0.001) TCGA-VS-A9UV-01 12 4919215 4919215 C T KCNA6 Missense_Mutation p.S3L 0.33 tolerated_low_confidence(0.34) benign(0.002) TCGA-VS-A9UV-01 12 50146300 50146300 C A TMBIM6 Silent p.I66I 0.06 TCGA-VS-A9UV-01 12 5022415 5022415 C T KCNA1 3'UTR 0.49 TCGA-VS-A9UV-01 12 81101689 81101689 C T MYF6 Missense_Mutation p.A64V 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-VS-A9UV-01 13 32906495 32906495 G T BRCA2 Nonsense_Mutation p.E294* 0.42 TCGA-VS-A9UV-01 13 48939072 48939073 TC - RB1 Frame_Shift_Del p.L303Wfs*6 0.50 TCGA-VS-A9UV-01 14 24785074 24785074 T C LTB4R Missense_Mutation p.F73L 0.06 tolerated(0.24) possibly_damaging(0.605) TCGA-VS-A9UV-01 14 32559987 32559987 T C ARHGAP5 Missense_Mutation p.C38R 0.38 deleterious(0) probably_damaging(1) TCGA-VS-A9UV-01 14 38061434 38061436 CTG - FOXA1 In_Frame_Del p.Q185del 0.49 TCGA-VS-A9UV-01 14 63841810 63841810 A G PPP2R5E 3'UTR 0.16 TCGA-VS-A9UV-01 14 91780049 91780049 G A CCDC88C Missense_Mutation p.A704V 0.39 deleterious(0.05) benign(0.053) TCGA-VS-A9UV-01 15 72338219 72338219 C T MYO9A Missense_Mutation p.R229H 0.85 deleterious(0.03) benign(0.022) TCGA-VS-A9UV-01 16 1904118 1904118 C T MEIOB Silent p.S204S 0.44 TCGA-VS-A9UV-01 16 55860064 55860064 G A CES1 Missense_Mutation p.P135L 0.21 deleterious(0.01) possibly_damaging(0.769) TCGA-VS-A9UV-01 16 64980774 64980774 G A CDH11 3'UTR 0.33 TCGA-VS-A9UV-01 16 70557448 70557448 C G COG4 5'UTR 0.06 TCGA-VS-A9UV-01 16 77328947 77328947 T C ADAMTS18 Missense_Mutation p.Q960R 0.27 tolerated(0.71) benign(0.174) TCGA-VS-A9UV-01 17 10441131 10441131 A G MYH2 Missense_Mutation p.C480R 0.06 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UV-01 17 35602055 35602055 G C ACACA Missense_Mutation p.L846V 0.05 tolerated(0.06) probably_damaging(0.986) TCGA-VS-A9UV-01 17 39296211 39296211 G A KRTAP4-6 Nonsense_Mutation p.R177* 0.34 TCGA-VS-A9UV-01 17 42082130 42082130 T C NAGS Silent p.C33C 0.57 TCGA-VS-A9UV-01 17 55940618 55940618 C A CUEDC1 3'UTR 0.33 TCGA-VS-A9UV-01 17 57918694 57918698 TGACA - VMP1 3'Flank 0.42 TCGA-VS-A9UV-01 17 76886743 76886743 G A DDC8 Missense_Mutation p.R615W 0.45 deleterious(0) benign(0.237) TCGA-VS-A9UV-01 18 48573310 48573310 A G SMAD4 5'UTR 0.56 TCGA-VS-A9UV-01 18 6949112 6949112 C G LAMA1 Missense_Mutation p.R2848S 0.39 tolerated(0.05) possibly_damaging(0.75) TCGA-VS-A9UV-01 18 77659045 77659045 G A KCNG2 Silent p.E210E 0.52 TCGA-VS-A9UV-01 19 12936647 12936647 G A RTBDN Missense_Mutation p.A220V 0.52 tolerated(0.35) unknown(0) TCGA-VS-A9UV-01 19 21606443 21606443 A G ZNF493 Missense_Mutation p.K328E 0.11 deleterious(0.01) unknown(0) TCGA-VS-A9UV-01 19 327194 327194 G A MIER2 Silent p.D144D 0.52 TCGA-VS-A9UV-01 19 55147157 55147157 C T LILRB1 Intron 0.42 TCGA-VS-A9UV-01 19 9449256 9449256 C T ZNF559 Nonsense_Mutation p.Q11* 0.40 TCGA-VS-A9UV-01 1 1111764 1111764 A G TTLL10 Intron 0.60 TCGA-VS-A9UV-01 1 1111768 1111768 C G TTLL10 Intron 0.59 TCGA-VS-A9UV-01 1 145298347 145298347 T C NBPF10 Silent p.D253D 0.13 TCGA-VS-A9UV-01 1 145498555 145498555 C T LIX1L Missense_Mutation p.S264L 0.57 deleterious(0.01) probably_damaging(0.947) TCGA-VS-A9UV-01 1 145530292 145530292 C A ITGA10 Silent p.V169V 0.26 TCGA-VS-A9UV-01 1 150771676 150771676 C T CTSK Silent p.Q286Q 0.61 TCGA-VS-A9UV-01 1 152552312 152552312 G T LCE3D Missense_Mutation p.S34Y 0.31 deleterious_low_confidence(0.03) unknown(0) TCGA-VS-A9UV-01 1 156146608 156146608 C T SEMA4A Silent p.L702L 0.53 TCGA-VS-A9UV-01 1 157739928 157739928 C T FCRL2 Missense_Mutation p.R108H 0.71 tolerated(0.74) benign(0.008) TCGA-VS-A9UV-01 1 16810912 16810912 C T CROCCP3 RNA 0.07 TCGA-VS-A9UV-01 1 20141346 20141346 C T RNF186 Silent p.P83P 0.25 TCGA-VS-A9UV-01 1 204409418 204409418 G A PIK3C2B Missense_Mutation p.T1094M 0.55 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UV-01 1 205126475 205126475 C G DSTYK Missense_Mutation p.D760H 0.34 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UV-01 1 207013305 207013305 T C IL19 Silent p.I145I 0.32 TCGA-VS-A9UV-01 1 223177194 223177194 G A DISP1 Missense_Mutation p.A819T 0.14 tolerated(0.18) benign(0.009) TCGA-VS-A9UV-01 1 226252049 226252049 T A H3F3A 5'UTR 0.27 TCGA-VS-A9UV-01 1 237205796 237205796 C T RYR2 5'UTR 0.58 TCGA-VS-A9UV-01 1 242511407 242511407 C A PLD5 Splice_Site p.X109_splice 0.57 TCGA-VS-A9UV-01 1 26688154 26688154 G C ZNF683 Missense_Mutation p.D501E 0.47 tolerated_low_confidence(0.78) benign(0) TCGA-VS-A9UV-01 1 44085815 44085815 G A PTPRF Missense_Mutation p.E1721K 0.53 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UV-01 20 3734753 3734753 G A C20orf27 Silent p.A184A 0.45 TCGA-VS-A9UV-01 20 47836031 47836031 G A DDX27 Missense_Mutation p.E47K 0.88 deleterious(0.04) benign(0.049) TCGA-VS-A9UV-01 20 48740776 48740776 C T TMEM189 Intron 0.89 TCGA-VS-A9UV-01 22 19958855 19958855 C T ARVCF Missense_Mutation p.D929N 0.41 tolerated_low_confidence(0.26) benign(0.003) TCGA-VS-A9UV-01 22 22117607 22117607 C T MAPK1 3'UTR 0.48 TCGA-VS-A9UV-01 22 28379248 28379248 G A TTC28 Missense_Mutation p.S2136L 0.48 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VS-A9UV-01 22 40075138 40075138 C T CACNA1I Silent p.D1694D 0.41 TCGA-VS-A9UV-01 22 41566429 41566429 T C EP300 Missense_Mutation p.W1436R 0.40 probably_damaging(1) TCGA-VS-A9UV-01 22 46786372 46786372 G A CELSR1 Nonsense_Mutation p.R2088* 0.51 TCGA-VS-A9UV-01 2 178370292 178370292 G A AGPS Missense_Mutation p.A512T 0.48 deleterious(0) probably_damaging(0.945) TCGA-VS-A9UV-01 2 179247325 179247325 A G OSBPL6 Intron 0.41 TCGA-VS-A9UV-01 2 179433060 179433060 T C TTN Silent p.T25933T 0.38 TCGA-VS-A9UV-01 2 202400950 202400950 C T ALS2CR11 Missense_Mutation p.E434K 0.44 tolerated(0.19) benign(0.001) TCGA-VS-A9UV-01 2 215910663 215910663 T C ABCA12 Missense_Mutation p.Q257R 0.57 deleterious(0) probably_damaging(0.993) TCGA-VS-A9UV-01 2 216289963 216289963 T C FN1 Missense_Mutation p.Q297R 0.28 tolerated(0.43) benign(0.109) TCGA-VS-A9UV-01 2 219528759 219528759 C T RNF25 Missense_Mutation p.R434H 0.44 tolerated(0.13) benign(0.011) TCGA-VS-A9UV-01 2 24118784 24118784 G A ATAD2B Silent p.R91R 0.53 TCGA-VS-A9UV-01 2 42119875 42119875 C T AC104654.1 RNA 0.34 TCGA-VS-A9UV-01 2 46986198 46986198 C G SOCS5 Missense_Mutation p.L177V 0.08 tolerated(0.06) probably_damaging(0.992) TCGA-VS-A9UV-01 2 61508251 61508251 C T USP34 Missense_Mutation p.D1709N 0.06 tolerated(0.35) benign(0.063) TCGA-VS-A9UV-01 2 63101496 63101496 T C EHBP1 Silent p.Y373Y 0.59 TCGA-VS-A9UV-01 2 88748004 88748004 T C FOXI3 RNA 0.08 TCGA-VS-A9UV-01 3 119134015 119134015 C T ARHGAP31 Missense_Mutation p.S1080L 0.27 tolerated(0.47) benign(0.002) TCGA-VS-A9UV-01 3 123441023 123441023 C A MYLK Nonsense_Mutation p.E586* 0.06 TCGA-VS-A9UV-01 3 14967623 14967623 G A FGD5 Missense_Mutation p.R1372Q 0.62 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UV-01 3 155571722 155571722 G A SLC33A1 Missense_Mutation p.S22F 0.28 tolerated_low_confidence(0.16) benign(0.068) TCGA-VS-A9UV-01 3 15686767 15686767 C T BTD Silent p.F468F 0.50 TCGA-VS-A9UV-01 3 185697510 185697510 C T RN7SL637P 3'Flank 0.60 TCGA-VS-A9UV-01 3 53226165 53226165 G A PRKCD Silent p.L638L 0.07 TCGA-VS-A9UV-01 3 75470995 75470995 T A FAM86DP RNA 0.33 TCGA-VS-A9UV-01 3 75470996 75470996 G T FAM86DP RNA 0.32 TCGA-VS-A9UV-01 3 9477537 9477537 C T SETD5 Missense_Mutation p.R172W 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A9UV-01 3 98002128 98002128 A G OR5H2 Missense_Mutation p.K133E 0.27 deleterious(0.02) benign(0.15) TCGA-VS-A9UV-01 3 98251526 98251526 T C GPR15 Missense_Mutation p.C217R 0.10 tolerated(0.06) possibly_damaging(0.776) TCGA-VS-A9UV-01 4 103717342 103717342 C A UBE2D3 3'Flank 0.09 TCGA-VS-A9UV-01 4 103718113 103718113 C T UBE2D3 3'Flank 0.08 TCGA-VS-A9UV-01 4 146056332 146056332 A G OTUD4 3'UTR 0.11 TCGA-VS-A9UV-01 4 153244137 153244137 G A FBXW7 Missense_Mutation p.R674W 0.16 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UV-01 4 41668674 41668674 A G LIMCH1 Missense_Mutation p.N745D 0.78 tolerated(0.63) benign(0.001) TCGA-VS-A9UV-01 5 112860820 112860820 C T YTHDC2 Missense_Mutation p.R141C 0.05 deleterious(0.04) benign(0.033) TCGA-VS-A9UV-01 5 140482555 140482555 C T PCDHB3 Silent p.F774F 0.45 TCGA-VS-A9UV-01 5 140802433 140802433 G A PCDHGA11 Missense_Mutation p.V547M 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.785) TCGA-VS-A9UV-01 5 174867958 174867958 A G DRD1 3'UTR 0.39 TCGA-VS-A9UV-01 5 178030703 178030703 C T CLK4 Missense_Mutation p.R454K 0.09 tolerated(1) benign(0.002) TCGA-VS-A9UV-01 5 63665593 63665593 T C RNF180 Silent p.I577I 0.39 TCGA-VS-A9UV-01 5 66300857 66300857 C G MAST4 Intron 0.35 TCGA-VS-A9UV-01 5 76717739 76717739 G A PDE8B Missense_Mutation p.V782M 0.30 deleterious(0) probably_damaging(0.986) TCGA-VS-A9UV-01 6 168188116 168188116 C T C6orf123 3'UTR 0.30 TCGA-VS-A9UV-01 6 38790671 38790671 C T DNAH8 Missense_Mutation p.A977V 0.49 benign(0.014) TCGA-VS-A9UV-01 6 6318876 6318876 C T F13A1 Missense_Mutation p.A8T 0.86 tolerated_low_confidence(1) benign(0) TCGA-VS-A9UV-01 7 111368514 111368514 T C DOCK4 Missense_Mutation p.Y1906C 0.29 deleterious_low_confidence(0.02) possibly_damaging(0.635) TCGA-VS-A9UV-01 7 150174196 150174196 C T GIMAP8 Silent p.V442V 0.58 TCGA-VS-A9UV-01 7 151873303 151873303 G A KMT2C Nonsense_Mutation p.R3079* 0.91 TCGA-VS-A9UV-01 7 2400535 2400535 A G EIF3B Silent p.K230K 0.25 TCGA-VS-A9UV-01 7 93515889 93515889 T C TFPI2 3'UTR 0.07 TCGA-VS-A9UV-01 7 99564650 99564650 G A AZGP1 Silent p.L291L 0.64 TCGA-VS-A9UV-01 8 100883691 100883704 TCTGGGCAGACCAG - VPS13B Frame_Shift_Del p.L3863Sfs*18 0.13 TCGA-VS-A9UV-01 8 117778979 117778979 G C UTP23 Missense_Mutation p.R46P 0.16 deleterious(0.01) possibly_damaging(0.776) TCGA-VS-A9UV-01 8 38003554 38003554 G A STAR Nonsense_Mutation p.R193* 0.13 TCGA-VS-A9UV-01 8 57077131 57077131 A T PLAG1 3'UTR 0.04 TCGA-VS-A9UV-01 8 62475356 62475356 C T ASPH Missense_Mutation p.V462M 0.28 deleterious(0) probably_damaging(0.994) TCGA-VS-A9UV-01 9 107548635 107548635 T C ABCA1 Silent p.A2115A 0.31 TCGA-VS-A9UV-01 9 116816408 116816408 C T ZNF618 3'UTR 0.24 TCGA-VS-A9UV-01 9 130513548 130513548 G A SH2D3C Missense_Mutation p.S196L 0.43 tolerated(0.06) probably_damaging(0.95) TCGA-VS-A9UV-01 9 131088114 131088114 C T COQ4 Missense_Mutation p.P119L 0.22 deleterious(0) probably_damaging(0.988) TCGA-VS-A9UV-01 9 135917545 135917545 C T GTF3C5 Silent p.C75C 0.53 TCGA-VS-A9UV-01 9 139354315 139354315 G A SEC16A Silent p.D1695D 0.43 TCGA-VS-A9UV-01 9 139716441 139716441 G A RABL6 Intron 0.47 TCGA-VS-A9UV-01 9 21141182 21141182 C T IFNW1 Missense_Mutation p.G130R 0.42 deleterious(0.05) benign(0.216) TCGA-VS-A9UV-01 9 712753 712753 A G KANK1 Missense_Mutation p.M663V 0.42 deleterious(0.03) benign(0.129) TCGA-VS-A9UV-01 9 84530388 84530388 C T SPATA31D5P RNA 0.46 TCGA-VS-A9UV-01 9 91617083 91617083 C T S1PR3 Missense_Mutation p.A323V 0.27 tolerated(0.19) benign(0.075) TCGA-VS-A9UV-01 X 100117740 100117740 G A NOX1 Missense_Mutation p.S136F 0.27 deleterious(0.03) possibly_damaging(0.797) TCGA-VS-A9UV-01 X 150156400 150156400 T A HMGB3 3'UTR 0.31 TCGA-VS-A9UV-01 X 151304249 151304249 T C MAGEA10 5'UTR 0.61 TCGA-VS-A9UV-01 X 152227000 152227000 C T PNMA3 3'UTR 0.48 TCGA-VS-A9UV-01 X 27997765 27997765 C T DCAF8L1 Missense_Mutation p.G563S 0.53 tolerated(0.83) benign(0) TCGA-VS-A9UV-01 X 49031028 49031028 A T PLP2 Silent p.A148A 0.22 TCGA-VS-A9UV-01 X 53607940 53607940 C G HUWE1 Missense_Mutation p.G1856A 0.49 probably_damaging(0.981) TCGA-VS-A9UV-01 X 55287022 55287022 A C PAGE3 Silent p.P88P 0.39 TCGA-VS-A9UV-01 X 85404042 85404042 G A DACH2 Missense_Mutation p.G140R 0.42 deleterious(0) probably_damaging(1) TCGA-VS-A9UY-01 10 1043143 1043143 C T GTPBP4 Intron 0.32 TCGA-VS-A9UY-01 10 115480915 115480915 G C CASP7 Missense_Mutation p.D112H 0.46 tolerated(0.47) benign(0.009) TCGA-VS-A9UY-01 10 24836453 24836453 C G KIAA1217 3'UTR 0.42 TCGA-VS-A9UY-01 10 50946288 50946288 C T OGDHL Silent p.A780A 0.47 TCGA-VS-A9UY-01 10 63175860 63175860 A T TMEM26 Intron 0.05 TCGA-VS-A9UY-01 10 75757905 75757905 C G VCL 5'UTR 0.41 TCGA-VS-A9UY-01 10 91198495 91198495 G A SLC16A12 Silent p.S298S 0.41 TCGA-VS-A9UY-01 11 123753940 123753940 C T TMEM225 Missense_Mutation p.E195K 0.21 tolerated(0.13) possibly_damaging(0.636) TCGA-VS-A9UY-01 11 18158839 18158839 C T MRGPRX3 Silent p.F30F 0.41 TCGA-VS-A9UY-01 11 555834 555834 C T C11orf35 Missense_Mutation p.E492K 0.48 tolerated(0.09) benign(0.005) TCGA-VS-A9UY-01 11 555864 555864 C T C11orf35 Missense_Mutation p.D482N 0.43 deleterious(0.01) possibly_damaging(0.791) TCGA-VS-A9UY-01 11 61730166 61730166 G TA BEST1 Nonsense_Mutation p.E454* 0.22 TCGA-VS-A9UY-01 11 63419422 63419422 G A ATL3 Missense_Mutation p.L183F 0.04 deleterious(0) probably_damaging(1) TCGA-VS-A9UY-01 11 65487893 65487893 A T RNASEH2C Intron 0.61 TCGA-VS-A9UY-01 11 65561685 65561686 - CA OVOL1 Frame_Shift_Ins p.R96Tfs*11 0.11 TCGA-VS-A9UY-01 11 66332377 66332377 C G CTSF Missense_Mutation p.E382D 0.20 tolerated(0.13) possibly_damaging(0.734) TCGA-VS-A9UY-01 11 66611061 66611061 C T RCE1 Silent p.L45L 0.23 TCGA-VS-A9UY-01 11 67559463 67559463 C G FAM86C2P RNA 0.28 TCGA-VS-A9UY-01 11 82444541 82444541 G C FAM181B Missense_Mutation p.I77M 0.16 deleterious(0) possibly_damaging(0.844) TCGA-VS-A9UY-01 11 9802031 9802031 G A SBF2 Silent p.C1828C 0.33 TCGA-VS-A9UY-01 12 11546538 11546538 C A PRB2 Missense_Mutation p.K158N 0.10 tolerated(0.13) unknown(0) TCGA-VS-A9UY-01 12 120763812 120763812 C G PLA2G1B Missense_Mutation p.D16H 0.05 tolerated(0.08) possibly_damaging(0.597) TCGA-VS-A9UY-01 12 130941236 130941236 G A RIMBP2 Nonsense_Mutation p.R38* 0.35 TCGA-VS-A9UY-01 12 26540385 26540385 A G ITPR2 Silent p.Y2613Y 0.37 TCGA-VS-A9UY-01 12 5154174 5154174 G A KCNA5 Silent p.A287A 0.35 TCGA-VS-A9UY-01 12 54449257 54449257 A T HOXC4 3'UTR 0.35 TCGA-VS-A9UY-01 12 72094733 72094733 C T TMEM19 Silent p.L323L 0.18 TCGA-VS-A9UY-01 12 8798732 8798732 C T MFAP5 3'UTR 0.06 TCGA-VS-A9UY-01 12 89746101 89746101 C G DUSP6 5'UTR 0.44 TCGA-VS-A9UY-01 12 89983714 89983714 G C ATP2B1 3'UTR 0.43 TCGA-VS-A9UY-01 12 89983832 89983832 G C ATP2B1 3'UTR 0.33 TCGA-VS-A9UY-01 13 113088850 113088850 A C SPACA7 Missense_Mutation p.Q192P 0.48 tolerated_low_confidence(0.31) benign(0) TCGA-VS-A9UY-01 13 46801780 46801780 C T LRRC63 Silent p.I73I 0.33 TCGA-VS-A9UY-01 13 74268136 74268136 C T KLF12 3'UTR 0.09 TCGA-VS-A9UY-01 13 95248468 95248468 G A TGDS 5'UTR 0.46 TCGA-VS-A9UY-01 13 95363415 95363415 C G SOX21 3'UTR 0.28 TCGA-VS-A9UY-01 14 23441392 23441392 G C AJUBA 3'UTR 0.49 TCGA-VS-A9UY-01 14 53525315 53525315 T C DDHD1 Silent p.P624P 0.05 TCGA-VS-A9UY-01 14 91444779 91444779 C T RPS6KA5 Missense_Mutation p.V89I 0.40 tolerated(0.14) benign(0.016) TCGA-VS-A9UY-01 14 92960535 92960535 C T SLC24A4 3'UTR 0.36 TCGA-VS-A9UY-01 15 42867958 42867958 G C STARD9 Missense_Mutation p.K15N 0.07 benign(0.044) TCGA-VS-A9UY-01 15 45813173 45813173 G C SLC30A4 Intron 0.27 TCGA-VS-A9UY-01 15 72501020 72501020 C G PKM Missense_Mutation p.E260Q 0.11 deleterious(0.02) benign(0.033) TCGA-VS-A9UY-01 15 78423649 78423649 C T CIB2 5'UTR 0.70 TCGA-VS-A9UY-01 15 90800917 90800917 G A TTLL13 Missense_Mutation p.E300K 0.39 tolerated(0.15) benign(0.011) TCGA-VS-A9UY-01 16 11797581 11797581 C A TXNDC11 Intron 0.08 TCGA-VS-A9UY-01 16 30667560 30667560 G A PRR14 Silent p.Q562Q 0.07 TCGA-VS-A9UY-01 16 30667567 30667567 G A PRR14 Missense_Mutation p.E565K 0.06 tolerated(0.52) benign(0.004) TCGA-VS-A9UY-01 16 4934903 4934903 G A PPL Silent p.L1251L 0.11 TCGA-VS-A9UY-01 16 75186852 75186852 G A ZFP1 Translation_Start_Site p.M1? 0.62 deleterious(0) benign(0.38) TCGA-VS-A9UY-01 16 88498136 88498136 G A ZNF469 Missense_Mutation p.E1392K 0.11 benign(0.001) TCGA-VS-A9UY-01 17 37358641 37358641 C G RPL19 Missense_Mutation p.R62G 0.34 deleterious(0.02) benign(0.094) TCGA-VS-A9UY-01 17 40369299 40369299 G A STAT5B Missense_Mutation p.S420F 0.33 tolerated(0.12) benign(0) TCGA-VS-A9UY-01 17 42194874 42194874 G A HDAC5 Missense_Mutation p.P4S 0.12 tolerated_low_confidence(0.15) probably_damaging(0.991) TCGA-VS-A9UY-01 17 4804078 4804078 C T C17orf107 3'UTR 0.70 TCGA-VS-A9UY-01 17 61613239 61613239 G A KCNH6 Silent p.L437L 0.10 TCGA-VS-A9UY-01 17 72365663 72365663 G A GPR142 Silent p.V100V 0.37 TCGA-VS-A9UY-01 17 77768935 77768935 T G CBX8 Silent p.G223G 0.40 TCGA-VS-A9UY-01 17 79864720 79864720 G A PCYT2 Nonsense_Mutation p.Q216* 0.41 TCGA-VS-A9UY-01 18 21343423 21343423 G A LAMA3 Missense_Mutation p.R373Q 0.50 benign(0.009) TCGA-VS-A9UY-01 18 3499218 3499218 C A DLGAP1 Nonsense_Mutation p.E967* 0.33 TCGA-VS-A9UY-01 18 55319787 55319787 C G ATP8B1 Missense_Mutation p.E1064Q 0.50 tolerated(0.25) probably_damaging(0.939) TCGA-VS-A9UY-01 18 55398994 55398994 G C ATP8B1 Missense_Mutation p.Q16E 0.08 tolerated_low_confidence(0.16) benign(0.001) TCGA-VS-A9UY-01 18 9517025 9517025 G A RALBP1 Missense_Mutation p.E143K 0.07 tolerated(0.21) probably_damaging(0.995) TCGA-VS-A9UY-01 19 10335236 10335236 G C S1PR2 Missense_Mutation p.L116V 0.53 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UY-01 19 15559064 15559064 C T WIZ Missense_Mutation p.E19K 0.47 deleterious_low_confidence(0.01) benign(0) TCGA-VS-A9UY-01 19 17476316 17476316 C T PLVAP Missense_Mutation p.E320K 0.14 tolerated(0.14) benign(0.422) TCGA-VS-A9UY-01 19 18684497 18684497 G A UBA52 Silent p.L43L 0.36 TCGA-VS-A9UY-01 19 33263686 33263686 C T TDRD12 Missense_Mutation p.S298L 0.37 tolerated(0.11) benign(0.01) TCGA-VS-A9UY-01 19 36506238 36506238 C T CLIP3 3'UTR 0.06 TCGA-VS-A9UY-01 19 36506294 36506294 C G CLIP3 3'UTR 0.06 TCGA-VS-A9UY-01 19 41131848 41131848 G A LTBP4 Missense_Mutation p.E1373K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A9UY-01 19 43514174 43514174 A T PSG11 Silent p.T328T 0.30 TCGA-VS-A9UY-01 19 54648041 54648041 G A CNOT3 Silent p.Q152Q 0.10 TCGA-VS-A9UY-01 19 7978254 7978254 G A MAP2K7 3'UTR 0.40 TCGA-VS-A9UY-01 1 111146588 111146588 C G KCNA2 Missense_Mutation p.E273Q 0.06 deleterious(0.03) probably_damaging(0.986) TCGA-VS-A9UY-01 1 111147329 111147329 C A KCNA2 Nonsense_Mutation p.E26* 0.27 TCGA-VS-A9UY-01 1 150129619 150129619 G C PLEKHO1 Missense_Mutation p.R155P 0.37 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UY-01 1 153913878 153913878 G T DENND4B Missense_Mutation p.S365Y 0.33 deleterious(0) probably_damaging(0.994) TCGA-VS-A9UY-01 1 155783569 155783569 G A GON4L Silent p.I436I 0.38 TCGA-VS-A9UY-01 1 159410502 159410502 G T OR10J1 Missense_Mutation p.K318N 0.39 tolerated(0.17) benign(0.016) TCGA-VS-A9UY-01 1 16254839 16254839 C T SPEN Nonsense_Mutation p.R702* 0.36 TCGA-VS-A9UY-01 1 179562794 179562794 G A TDRD5 Silent p.A144A 0.42 TCGA-VS-A9UY-01 1 2106706 2106706 C T PRKCZ Missense_Mutation p.S510F 0.24 tolerated(0.06) benign(0.285) TCGA-VS-A9UY-01 1 212208937 212208937 C T DTL 5'UTR 0.27 TCGA-VS-A9UY-01 1 216172310 216172310 G T USH2A Silent p.V2192V 0.36 TCGA-VS-A9UY-01 1 21938243 21938243 G A RAP1GAP Missense_Mutation p.L291F 0.43 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UY-01 1 220142273 220142273 G C EPRS Missense_Mutation p.P1472A 0.41 deleterious(0.03) possibly_damaging(0.827) TCGA-VS-A9UY-01 1 226124853 226124853 G A LEFTY2 3'UTR 0.58 TCGA-VS-A9UY-01 1 40211083 40211083 C G PPIE Missense_Mutation p.Q141E 0.07 deleterious(0.01) benign(0.088) TCGA-VS-A9UY-01 1 45484530 45484530 G A ZSWIM5 Silent p.L1052L 0.36 TCGA-VS-A9UY-01 1 63018517 63018517 C A DOCK7 Silent p.V884V 0.48 TCGA-VS-A9UY-01 1 71872393 71872393 T G NEGR1 3'UTR 0.46 TCGA-VS-A9UY-01 1 87458776 87458776 C G RP5-1052I5.2 Missense_Mutation p.I4M 0.38 deleterious_low_confidence(0) benign(0.364) TCGA-VS-A9UY-01 20 31760768 31760768 G A BPIFA2 Missense_Mutation p.G63E 0.10 tolerated(1) benign(0.018) TCGA-VS-A9UY-01 20 5283226 5283226 C A PROKR2 Missense_Mutation p.K205N 0.29 tolerated(0.14) benign(0.173) TCGA-VS-A9UY-01 20 56090644 56090644 C G CTCFL Intron 0.48 TCGA-VS-A9UY-01 20 7963077 7963077 C T TMX4 Missense_Mutation p.E291K 0.53 tolerated(0.07) benign(0.081) TCGA-VS-A9UY-01 20 9459626 9459626 C T PLCB4 Silent p.N1185N 0.22 TCGA-VS-A9UY-01 21 16335612 16335612 C T NRIP1 3'UTR 0.50 TCGA-VS-A9UY-01 21 16338490 16338490 G C NRIP1 Nonsense_Mutation p.S675* 0.07 TCGA-VS-A9UY-01 22 26747131 26747131 G C SEZ6L Missense_Mutation p.E841Q 0.10 tolerated(0.15) benign(0.093) TCGA-VS-A9UY-01 22 29709240 29709240 G C RASL10A 3'UTR 0.31 TCGA-VS-A9UY-01 22 33198067 33198067 C A TIMP3 Nonsense_Mutation p.S27* 0.60 TCGA-VS-A9UY-01 22 41558756 41558757 - A EP300 Frame_Shift_Ins p.N1236Kfs*2 0.28 TCGA-VS-A9UY-01 22 41569689 41569689 G C EP300 Missense_Mutation p.K1560N 0.46 possibly_damaging(0.667) TCGA-VS-A9UY-01 22 50986892 50986892 G A KLHDC7B Silent p.A99A 0.26 TCGA-VS-A9UY-01 2 130831557 130831557 C G POTEF 3'UTR 0.24 TCGA-VS-A9UY-01 2 132285499 132285499 G A CCDC74A 5'UTR 0.38 TCGA-VS-A9UY-01 2 189876914 189876914 C T COL3A1 3'UTR 0.09 TCGA-VS-A9UY-01 2 201399785 201399785 G C SGOL2 Missense_Mutation p.R67T 0.10 tolerated(0.07) possibly_damaging(0.888) TCGA-VS-A9UY-01 2 219414622 219414622 C T USP37 Silent p.P113P 0.78 TCGA-VS-A9UY-01 2 29405978 29405978 G A CLIP4 3'UTR 0.50 TCGA-VS-A9UY-01 2 39553045 39553045 C T MAP4K3 Missense_Mutation p.M240I 0.31 tolerated(0.15) benign(0.009) TCGA-VS-A9UY-01 2 45416327 45416327 G C LINC01121 RNA 0.11 TCGA-VS-A9UY-01 2 69172388 69172388 T G GKN2 3'UTR 0.43 TCGA-VS-A9UY-01 2 74687554 74687554 C T WBP1 Nonsense_Mutation p.Q186* 0.39 TCGA-VS-A9UY-01 3 119343984 119343984 C G PLA1A Silent p.L342L 0.48 TCGA-VS-A9UY-01 3 121448052 121448052 C G GOLGB1 Missense_Mutation p.E129Q 0.35 possibly_damaging(0.856) TCGA-VS-A9UY-01 3 123348452 123348452 G A MYLK Silent p.F1661F 0.47 TCGA-VS-A9UY-01 3 129284836 129284836 T C PLXND1 Missense_Mutation p.M1406V 0.45 tolerated(1) benign(0.01) TCGA-VS-A9UY-01 3 130368058 130368058 C T COL6A6 Silent p.P1795P 0.43 TCGA-VS-A9UY-01 3 170150746 170150746 C T CLDN11 3'UTR 0.25 TCGA-VS-A9UY-01 3 178927980 178927980 T C PIK3CA Missense_Mutation p.C420R 0.22 tolerated(0.21) possibly_damaging(0.893) TCGA-VS-A9UY-01 3 189612750 189612750 G C TP63 3'UTR 0.15 TCGA-VS-A9UY-01 3 193128791 193128791 C G ATP13A4 Missense_Mutation p.E1093Q 0.30 tolerated(0.51) benign(0.179) TCGA-VS-A9UY-01 3 28616832 28616832 C G LINC00693 RNA 0.36 TCGA-VS-A9UY-01 3 33580357 33580369 TGGATTGCTTCAG - CLASP2 Frame_Shift_Del p.T1165Rfs*11 0.48 TCGA-VS-A9UY-01 3 47894411 47894411 C T MAP4 3'UTR 0.08 TCGA-VS-A9UY-01 3 47894681 47894681 C T MAP4 Silent p.Q1141Q 0.05 TCGA-VS-A9UY-01 3 49059867 49059867 C G NDUFAF3 Missense_Mutation p.Q56E 0.08 tolerated(1) benign(0.002) TCGA-VS-A9UY-01 3 49278785 49278785 G C CCDC36 Missense_Mutation p.E120Q 0.07 deleterious(0.05) probably_damaging(0.997) TCGA-VS-A9UY-01 3 52233277 52233277 G A ALAS1 Missense_Mutation p.R7H 0.36 tolerated(0.26) probably_damaging(0.998) TCGA-VS-A9UY-01 3 56702427 56702427 G C FAM208A Missense_Mutation p.Q299E 0.40 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UY-01 3 78683084 78683084 C A ROBO1 Splice_Site p.X1161_splice 0.43 TCGA-VS-A9UY-01 4 103853316 103853316 C G SLC9B1 Missense_Mutation p.G265A 0.35 deleterious(0.03) possibly_damaging(0.893) TCGA-VS-A9UY-01 4 104070517 104070517 C G CENPE Missense_Mutation p.E1149Q 0.06 benign(0.358) TCGA-VS-A9UY-01 4 123855319 123855327 AGTATTGCG - SPATA5 In_Frame_Del p.L193_V195del 0.36 TCGA-VS-A9UY-01 4 125631504 125631504 T C ANKRD50 Missense_Mutation p.M55V 0.43 tolerated_low_confidence(0.26) benign(0) TCGA-VS-A9UY-01 4 155533815 155533815 C T FGG 5'Flank 0.41 TCGA-VS-A9UY-01 5 122718556 122718556 A T CEP120 Missense_Mutation p.S630T 0.43 tolerated(0.71) benign(0.023) TCGA-VS-A9UY-01 5 123984547 123984547 C G ZNF608 Silent p.L510L 0.44 TCGA-VS-A9UY-01 5 132556455 132556455 C G FSTL4 Missense_Mutation p.K481N 0.36 deleterious(0.03) possibly_damaging(0.558) TCGA-VS-A9UY-01 5 137223057 137223057 G A MYOT Missense_Mutation p.E494K 0.35 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UY-01 5 34826479 34826479 G C RAI14 Missense_Mutation p.L901F 0.78 deleterious(0) probably_damaging(1) TCGA-VS-A9UY-01 5 39316105 39316105 G A C9 Silent p.T214T 0.24 TCGA-VS-A9UY-01 6 114178783 114178783 C A MARCKS 5'UTR 0.38 TCGA-VS-A9UY-01 6 132269473 132269473 C T CTGF 3'UTR 0.46 TCGA-VS-A9UY-01 6 132966848 132966848 G A TAAR1 Missense_Mutation p.H99Y 0.45 tolerated(0.07) possibly_damaging(0.652) TCGA-VS-A9UY-01 6 160469564 160469564 G C IGF2R Missense_Mutation p.E835Q 0.38 tolerated(0.45) benign(0.023) TCGA-VS-A9UY-01 6 26033568 26033570 TCT - HIST1H2AB In_Frame_Del p.K76del 0.85 TCGA-VS-A9UY-01 6 33258223 33258223 G A PFDN6 Missense_Mutation p.E86K 0.36 deleterious(0) probably_damaging(1) TCGA-VS-A9UY-01 6 37622696 37622696 C T MDGA1 Missense_Mutation p.V198I 0.25 tolerated(1) probably_damaging(0.992) TCGA-VS-A9UY-01 6 43466665 43466665 G C TJAP1 Intron 0.36 TCGA-VS-A9UY-01 6 62688105 62688105 T A KHDRBS2 Missense_Mutation p.R117W 0.34 deleterious(0) probably_damaging(0.998) TCGA-VS-A9UY-01 6 82459134 82459134 G A FAM46A 3'UTR 0.49 TCGA-VS-A9UY-01 6 83074770 83074770 C A TPBG Nonsense_Mutation p.S31* 0.35 TCGA-VS-A9UY-01 6 83838959 83838959 C G DOPEY1 Silent p.L691L 0.35 TCGA-VS-A9UY-01 7 102100182 102100182 C G ALKBH4 Missense_Mutation p.E64Q 0.05 tolerated(0.39) benign(0.007) TCGA-VS-A9UY-01 7 128519853 128519853 C G KCP RNA 0.65 TCGA-VS-A9UY-01 7 141619012 141619012 G A OR9A4 Missense_Mutation p.A113T 0.72 tolerated(0.21) benign(0.003) TCGA-VS-A9UY-01 7 142021265 142021265 G A TRBV5-1 Missense_Mutation p.R82Q 0.84 deleterious(0.01) possibly_damaging(0.788) TCGA-VS-A9UY-01 7 143093525 143093525 C T EPHA1 Missense_Mutation p.R617Q 0.85 tolerated(0.32) benign(0.001) TCGA-VS-A9UY-01 7 149128704 149128704 C T ZNF777 3'UTR 0.17 TCGA-VS-A9UY-01 7 22986741 22986741 C A FAM126A Intron 0.45 TCGA-VS-A9UY-01 7 24888705 24888705 C T OSBPL3 Missense_Mutation p.G417S 0.46 tolerated(0.79) benign(0.001) TCGA-VS-A9UY-01 7 92206452 92206452 C G FAM133B Missense_Mutation p.E144Q 0.78 deleterious_low_confidence(0.04) unknown(0) TCGA-VS-A9UY-01 7 97874314 97874314 G A TECPR1 Silent p.D97D 0.88 TCGA-VS-A9UY-01 8 113243805 113243805 T C CSMD3 Silent p.K3599K 0.73 TCGA-VS-A9UY-01 8 144511634 144511634 C T MAFA Missense_Mutation p.E315K 0.22 deleterious(0) probably_damaging(0.995) TCGA-VS-A9UY-01 8 144940951 144940951 G A EPPK1 Silent p.L2157L 0.29 TCGA-VS-A9UY-01 8 18386371 18386371 C A PSD3 3'UTR 0.61 TCGA-VS-A9UY-01 8 77766906 77766906 C T ZFHX4 Silent p.D2583D 0.07 TCGA-VS-A9UY-01 8 91804136 91804144 TCGCCGTCC - NECAB1 In_Frame_Del p.P9_S11del 0.35 TCGA-VS-A9UY-01 9 104171176 104171176 G A ZNF189 Missense_Mutation p.E376K 0.36 tolerated(0.07) benign(0.438) TCGA-VS-A9UY-01 9 125391780 125391780 G A OR1B1 Missense_Mutation p.P12L 0.19 deleterious(0.03) possibly_damaging(0.578) TCGA-VS-A9UY-01 9 126132937 126132937 C G CRB2 Silent p.L535L 0.08 TCGA-VS-A9UY-01 9 130145762 130145762 T G GARNL3 Missense_Mutation p.F736C 0.30 tolerated(0.18) possibly_damaging(0.855) TCGA-VS-A9UY-01 9 130703631 130703631 G A FAM102A 3'UTR 0.24 TCGA-VS-A9UY-01 9 133261835 133261835 G A HMCN2 Silent p.S137S 0.16 TCGA-VS-A9UY-01 9 139265415 139265415 C T CARD9 Missense_Mutation p.E169K 0.44 deleterious(0) possibly_damaging(0.838) TCGA-VS-A9UY-01 9 140611338 140611338 C T EHMT1 Nonsense_Mutation p.Q116* 0.17 TCGA-VS-A9UY-01 9 19056344 19056344 T C HAUS6 Silent p.R955R 0.39 TCGA-VS-A9UY-01 9 19450499 19450499 C G ACER2 Nonsense_Mutation p.Y231* 0.44 TCGA-VS-A9UY-01 9 32543444 32543444 C T TOPORS Missense_Mutation p.R360Q 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A9UY-01 9 39109162 39109162 C T CNTNAP3 Missense_Mutation p.G787E 0.24 deleterious(0) probably_damaging(1) TCGA-VS-A9UY-01 9 45728091 45728091 C G FAM27A 3'UTR 0.26 TCGA-VS-A9UY-01 9 98637332 98637332 C T ERCC6L2 5'Flank 0.54 TCGA-VS-A9UY-01 X 103080262 103080262 T A RAB9B Missense_Mutation p.L151F 0.36 tolerated(1) benign(0.01) TCGA-VS-A9UY-01 X 106846576 106846576 C G FRMPD3 Silent p.T1802T 0.09 TCGA-VS-A9UY-01 X 112053141 112053141 G A AMOT Silent p.I537I 0.38 TCGA-VS-A9UY-01 X 114884656 114884656 C T PLS3 3'UTR 0.08 TCGA-VS-A9UY-01 X 140985402 140985402 T G MAGEC3 Intron 0.42 TCGA-VS-A9UY-01 X 19377702 19377702 C G PDHA1 Missense_Mutation p.I406M 0.38 deleterious(0) benign(0.175) TCGA-VS-A9UY-01 X 21874985 21874986 - ATCAAA YY2 In_Frame_Ins p.S129_T130insKS 0.20 TCGA-VS-A9UY-01 X 48674313 48674313 C A HDAC6 Missense_Mutation p.N449K 0.33 tolerated(0.9) benign(0.001) TCGA-VS-A9UY-01 X 48921965 48921965 G A CCDC120 Missense_Mutation p.R130H 0.52 deleterious(0.02) benign(0.117) TCGA-VS-A9UY-01 X 49103233 49103233 G A CCDC22 Silent p.L252L 0.14 TCGA-VS-A9UY-01 X 53576212 53576212 C T HUWE1 Missense_Mutation p.S3248N 0.40 benign(0.01) TCGA-VS-A9UY-01 X 63568572 63568572 G A MTMR8 Nonsense_Mutation p.Q234* 0.05 TCGA-VS-A9UY-01 X 7812135 7812135 C T VCX 3'UTR 0.15 TCGA-VS-A9UY-01 X 79282788 79282791 GCTA CCT TBX22 Frame_Shift_Del p.A278Pfs*18 0.25 TCGA-VS-A9UZ-01 10 102849928 102849928 C T TLX1NB 5'UTR 0.28 TCGA-VS-A9UZ-01 10 102849950 102849950 C A TLX1NB 5'UTR 0.41 TCGA-VS-A9UZ-01 10 102850344 102850344 C T TLX1NB 5'UTR 0.19 TCGA-VS-A9UZ-01 10 115413797 115413797 G A NRAP Nonsense_Mutation p.R150* 0.29 TCGA-VS-A9UZ-01 10 1175360 1175360 C T WDR37 3'UTR 0.41 TCGA-VS-A9UZ-01 10 122610989 122610989 C A WDR11 Silent p.L19L 0.08 TCGA-VS-A9UZ-01 10 21803344 21803344 C T SKIDA1 3'UTR 0.33 TCGA-VS-A9UZ-01 10 51586694 51586694 C T NCOA4 3'UTR 0.26 TCGA-VS-A9UZ-01 10 70863686 70863686 C T SRGN Missense_Mutation p.S96L 0.28 deleterious(0) probably_damaging(1) TCGA-VS-A9UZ-01 10 73819505 73819505 G A SPOCK2 3'UTR 0.39 TCGA-VS-A9UZ-01 10 81838524 81838524 C T TMEM254 Silent p.L23L 0.39 TCGA-VS-A9UZ-01 10 89621644 89621644 C G KLLN 3'UTR 0.39 TCGA-VS-A9UZ-01 10 96961857 96961857 C T C10orf129 Missense_Mutation p.S103L 0.29 tolerated(0.05) benign(0.023) TCGA-VS-A9UZ-01 10 98820490 98820490 G T SLIT1 Missense_Mutation p.P283Q 0.32 deleterious(0.01) probably_damaging(1) TCGA-VS-A9UZ-01 11 102221447 102221447 G A BIRC2 Missense_Mutation p.E288K 0.45 tolerated(0.05) benign(0.019) TCGA-VS-A9UZ-01 11 105948531 105948531 G A AASDHPPT Missense_Mutation p.E32K 0.31 deleterious(0.01) benign(0.275) TCGA-VS-A9UZ-01 11 108361907 108361907 G A KDELC2 Intron 0.31 TCGA-VS-A9UZ-01 11 111952749 111952749 G C C11orf57 Missense_Mutation p.E122Q 0.19 tolerated(0.08) probably_damaging(0.956) TCGA-VS-A9UZ-01 11 112089171 112089171 G A BCO2 3'UTR 0.39 TCGA-VS-A9UZ-01 11 119216806 119216806 G C MFRP Missense_Mutation p.S74C 0.31 tolerated(0.09) benign(0.285) TCGA-VS-A9UZ-01 11 130340859 130340859 G A ADAMTS15 Missense_Mutation p.G589S 0.32 tolerated(0.49) probably_damaging(1) TCGA-VS-A9UZ-01 11 14853297 14853297 G A PDE3B Missense_Mutation p.E690K 0.37 tolerated(0.36) benign(0.269) TCGA-VS-A9UZ-01 11 1977579 1977579 G A MRPL23 Missense_Mutation p.E131K 0.25 tolerated(0.84) benign(0) TCGA-VS-A9UZ-01 11 33564937 33564937 C T KIAA1549L Missense_Mutation p.P313S 0.41 tolerated_low_confidence(0.77) benign(0.021) TCGA-VS-A9UZ-01 11 44297028 44297028 C T ALX4 Missense_Mutation p.R216Q 0.25 deleterious(0) probably_damaging(0.988) TCGA-VS-A9UZ-01 11 55927225 55927225 G A OR8K5 Missense_Mutation p.S190L 0.35 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-VS-A9UZ-01 11 61044091 61044091 T C VWCE Missense_Mutation p.Q490R 0.26 tolerated(0.44) benign(0.003) TCGA-VS-A9UZ-01 11 66100774 66100774 G A RIN1 Silent p.L610L 0.40 TCGA-VS-A9UZ-01 11 66325383 66325383 G A CTD-3074O7.2 3'Flank 0.23 TCGA-VS-A9UZ-01 11 67202126 67202126 C T RPS6KB2 Missense_Mutation p.S410L 0.27 deleterious(0.03) possibly_damaging(0.496) TCGA-VS-A9UZ-01 11 67810330 67810330 G T TCIRG1 Missense_Mutation p.Q139H 0.44 tolerated(0.56) possibly_damaging(0.516) TCGA-VS-A9UZ-01 11 68369434 68369434 G A PPP6R3 Missense_Mutation p.E766K 0.27 tolerated(0.86) benign(0.087) TCGA-VS-A9UZ-01 11 771069 771069 G A PDDC1 Missense_Mutation p.R194C 0.29 deleterious(0) probably_damaging(1) TCGA-VS-A9UZ-01 12 112460236 112460236 C G ERP29 Nonsense_Mutation p.S189* 0.21 TCGA-VS-A9UZ-01 12 116450645 116450645 C G MED13L Missense_Mutation p.D413H 0.39 deleterious(0) unknown(0) TCGA-VS-A9UZ-01 12 120124095 120124095 G A CIT 3'UTR 0.36 TCGA-VS-A9UZ-01 12 120128164 120128164 C T CIT Missense_Mutation p.R1993Q 0.29 tolerated_low_confidence(0.07) benign(0.004) TCGA-VS-A9UZ-01 12 130521447 130521447 C T RP11-474D1.3 RNA 0.11 TCGA-VS-A9UZ-01 12 45610152 45610152 G C ANO6 Missense_Mutation p.E16D 0.33 tolerated_low_confidence(0.05) benign(0) TCGA-VS-A9UZ-01 12 49075377 49075377 C T KANSL2 Silent p.R13R 0.27 TCGA-VS-A9UZ-01 12 5021856 5021856 G A KCNA1 Missense_Mutation p.D438N 0.16 tolerated_low_confidence(0.57) benign(0.001) TCGA-VS-A9UZ-01 12 53070890 53070890 G A KRT1 Missense_Mutation p.R403C 0.27 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UZ-01 12 54903652 54903652 C G NCKAP1L Silent p.L206L 0.44 TCGA-VS-A9UZ-01 12 56624038 56624038 T C SLC39A5 5'Flank 0.16 TCGA-VS-A9UZ-01 12 60169010 60169010 C T SLC16A7 Nonsense_Mutation p.R312* 0.43 TCGA-VS-A9UZ-01 12 6483554 6483554 G C SCNN1A Missense_Mutation p.I191M 0.30 deleterious(0) possibly_damaging(0.637) TCGA-VS-A9UZ-01 12 7302137 7302137 C T CLSTN3 Missense_Mutation p.S698L 0.28 tolerated(0.39) benign(0.024) TCGA-VS-A9UZ-01 12 9252067 9252067 G A A2M Silent p.V537V 0.29 TCGA-VS-A9UZ-01 12 97311508 97311508 C T NEDD1 Missense_Mutation p.S121F 0.31 deleterious(0) probably_damaging(0.961) TCGA-VS-A9UZ-01 13 107144525 107144525 C T EFNB2 3'UTR 0.33 TCGA-VS-A9UZ-01 13 51417496 51417496 C G DLEU7 Missense_Mutation p.G96A 0.20 tolerated(0.74) possibly_damaging(0.758) TCGA-VS-A9UZ-01 13 52971489 52971489 C T THSD1 Missense_Mutation p.R300K 0.21 tolerated(0.26) benign(0.008) TCGA-VS-A9UZ-01 13 84455723 84455723 C T SLITRK1 5'UTR 0.34 TCGA-VS-A9UZ-01 14 100172890 100172890 C G CYP46A1 Intron 0.31 TCGA-VS-A9UZ-01 14 102391758 102391758 G A PPP2R5C 3'UTR 0.49 TCGA-VS-A9UZ-01 14 105052805 105052805 G T C14orf180 Missense_Mutation p.R13L 0.30 tolerated(0.43) benign(0.053) TCGA-VS-A9UZ-01 14 105239420 105239420 C T AKT1 Missense_Mutation p.D323N 0.39 deleterious(0.03) possibly_damaging(0.843) TCGA-VS-A9UZ-01 14 106311974 106311974 G A IGHD Missense_Mutation p.S13L 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.477) TCGA-VS-A9UZ-01 14 20444655 20444655 G C OR4K15 Missense_Mutation p.K326N 0.39 tolerated(0.13) benign(0.058) TCGA-VS-A9UZ-01 14 23441733 23441735 AGG - AJUBA 3'UTR 0.41 TCGA-VS-A9UZ-01 14 24769149 24769149 C G NOP9 5'UTR 0.31 TCGA-VS-A9UZ-01 14 35343831 35343831 C T BAZ1A 5'UTR 0.25 TCGA-VS-A9UZ-01 14 36169380 36169380 C T RALGAPA1 Intron 0.30 TCGA-VS-A9UZ-01 14 55650388 55650388 C G DLGAP5 Missense_Mutation p.E108Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UZ-01 14 58838790 58838790 C T ARID4A 3'UTR 0.28 TCGA-VS-A9UZ-01 14 60194082 60194082 C T RTN1 Silent p.P440P 0.09 TCGA-VS-A9UZ-01 14 69256368 69256368 G T ZFP36L1 Nonsense_Mutation p.S300* 0.36 TCGA-VS-A9UZ-01 14 73718246 73718246 C G PAPLN Intron 0.28 TCGA-VS-A9UZ-01 14 75470377 75470377 G A EIF2B2 Silent p.A136A 0.16 TCGA-VS-A9UZ-01 14 77269772 77269772 G A ANGEL1 Silent p.I520I 0.44 TCGA-VS-A9UZ-01 14 93693904 93693904 G A UBR7 3'UTR 0.19 TCGA-VS-A9UZ-01 15 25322092 25322092 A C SNORD116-9 3'Flank 0.28 TCGA-VS-A9UZ-01 15 27017597 27017597 C A GABRB3 Silent p.G64G 0.36 TCGA-VS-A9UZ-01 15 32716890 32716890 G A U8 3'Flank 0.19 TCGA-VS-A9UZ-01 15 34077924 34077924 G T RYR3 Silent p.L3110L 0.33 TCGA-VS-A9UZ-01 15 34648380 34648380 C T NUTM1 Missense_Mutation p.P696L 0.29 tolerated(0.23) benign(0.01) TCGA-VS-A9UZ-01 15 42185461 42185461 C T SPTBN5 Intron 0.64 TCGA-VS-A9UZ-01 15 42731855 42731855 G C ZNF106 Nonsense_Mutation p.S1284* 0.10 TCGA-VS-A9UZ-01 15 45003745 45003745 A C B2M Translation_Start_Site p.M1? 0.62 deleterious(0) possibly_damaging(0.456) TCGA-VS-A9UZ-01 15 77756669 77756669 G A HMG20A Silent p.Q59Q 0.58 TCGA-VS-A9UZ-01 15 85401596 85401596 G T ALPK3 Silent p.G1411G 0.45 TCGA-VS-A9UZ-01 15 90119216 90119216 G A TICRR Silent p.L133L 0.29 TCGA-VS-A9UZ-01 15 90802152 90802152 G A TTLL13 Missense_Mutation p.E449K 0.54 tolerated(0.06) benign(0.037) TCGA-VS-A9UZ-01 15 92977573 92977573 G C ST8SIA2 Missense_Mutation p.W86C 0.51 probably_damaging(0.993) TCGA-VS-A9UZ-01 16 23690217 23690217 C T PLK1 5'UTR 0.36 TCGA-VS-A9UZ-01 16 30745838 30745838 G C SRCAP Missense_Mutation p.D2211H 0.06 probably_damaging(0.961) TCGA-VS-A9UZ-01 16 335112 335112 T G PDIA2 Missense_Mutation p.V236G 0.31 tolerated(0.3) possibly_damaging(0.826) TCGA-VS-A9UZ-01 16 53671733 53671733 C T RPGRIP1L Missense_Mutation p.E1032K 0.29 tolerated(0.1) benign(0.002) TCGA-VS-A9UZ-01 16 55854299 55854299 G A CES1 Silent p.V262V 0.14 TCGA-VS-A9UZ-01 16 56904555 56904555 C T SLC12A3 Silent p.I253I 0.29 TCGA-VS-A9UZ-01 16 57694766 57694766 G A GPR56 Missense_Mutation p.E554K 0.11 tolerated(0.35) benign(0.201) TCGA-VS-A9UZ-01 16 57973454 57973454 C T CNGB1 Missense_Mutation p.E418K 0.30 tolerated(0.46) benign(0.001) TCGA-VS-A9UZ-01 16 58328883 58328883 C T PRSS54 5'UTR 0.32 TCGA-VS-A9UZ-01 16 58583639 58583639 G A CNOT1 Missense_Mutation p.T1169I 0.37 deleterious(0) probably_damaging(0.978) TCGA-VS-A9UZ-01 16 77243346 77243346 G C SYCE1L Missense_Mutation p.E113Q 0.33 deleterious(0.01) possibly_damaging(0.471) TCGA-VS-A9UZ-01 16 77822594 77822594 C T VAT1L Silent p.G5G 0.52 TCGA-VS-A9UZ-01 17 11642209 11642209 C T DNAH9 Nonsense_Mutation p.Q1943* 0.25 TCGA-VS-A9UZ-01 17 2202837 2202837 G A SMG6 Missense_Mutation p.R404C 0.56 deleterious(0.01) benign(0.008) TCGA-VS-A9UZ-01 17 26727932 26727932 G A SARM1 3'UTR 0.27 TCGA-VS-A9UZ-01 17 27182260 27182260 C T ERAL1 Silent p.L70L 0.43 TCGA-VS-A9UZ-01 17 31618594 31618594 C T ASIC2 Silent p.P180P 0.23 TCGA-VS-A9UZ-01 17 34207286 34207286 G A CCL5 Silent p.L8L 0.35 TCGA-VS-A9UZ-01 17 38252984 38252984 G A NR1D1 Missense_Mutation p.S140L 0.18 deleterious(0) probably_damaging(1) TCGA-VS-A9UZ-01 17 38296847 38296847 G A CASC3 Missense_Mutation p.E16K 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-VS-A9UZ-01 17 39780790 39780790 G A KRT17 5'UTR 0.41 TCGA-VS-A9UZ-01 17 41582021 41582021 G A DHX8 Missense_Mutation p.R519K 0.38 tolerated(0.13) benign(0.056) TCGA-VS-A9UZ-01 17 42282695 42282695 G C UBTF 3'UTR 0.26 TCGA-VS-A9UZ-01 17 45199948 45199948 G C CDC27 Missense_Mutation p.Q758E 0.31 tolerated(0.14) benign(0.155) TCGA-VS-A9UZ-01 17 74574882 74574882 C T ST6GALNAC2 Missense_Mutation p.E48K 0.46 benign(0) TCGA-VS-A9UZ-01 17 74676870 74676870 C T MXRA7 Intron 0.25 TCGA-VS-A9UZ-01 17 77760242 77760242 C T CBX2 3'UTR 0.41 TCGA-VS-A9UZ-01 17 79432865 79432865 C T RP11-1055B8.7 3'UTR 0.41 TCGA-VS-A9UZ-01 17 9083201 9083206 GTGACG - NTN1 In_Frame_Del p.V429_T430del 0.33 TCGA-VS-A9UZ-01 18 3596988 3596988 C G DLGAP1 Intron 0.39 TCGA-VS-A9UZ-01 19 12060036 12060036 C T ZNF700 Silent p.F399F 0.34 TCGA-VS-A9UZ-01 19 13925340 13925340 G A ZSWIM4 Intron 0.31 TCGA-VS-A9UZ-01 19 16989000 16989000 C G SIN3B Silent p.L1019L 0.23 TCGA-VS-A9UZ-01 19 16999884 16999884 C T F2RL3 5'UTR 0.47 TCGA-VS-A9UZ-01 19 24309614 24309614 G A ZNF254 Missense_Mutation p.C271Y 0.34 deleterious(0.01) probably_damaging(0.988) TCGA-VS-A9UZ-01 19 30935498 30935498 C T ZNF536 Silent p.N343N 0.24 TCGA-VS-A9UZ-01 19 37904525 37904525 C T ZNF569 Missense_Mutation p.M345I 0.28 deleterious(0.04) probably_damaging(0.979) TCGA-VS-A9UZ-01 19 39051846 39051846 G A RYR1 Missense_Mutation p.E4126K 0.27 benign(0.002) TCGA-VS-A9UZ-01 19 41515238 41515238 G T CYP2B6 Nonsense_Mutation p.E254* 0.34 TCGA-VS-A9UZ-01 19 42813979 42813979 G A PRR19 Silent p.V81V 0.20 TCGA-VS-A9UZ-01 19 44732698 44732698 G A ZNF227 Missense_Mutation p.E54K 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-VS-A9UZ-01 19 47883072 47883072 C T DHX34 Nonsense_Mutation p.R938* 0.12 TCGA-VS-A9UZ-01 19 49658468 49658468 G A HRC Silent p.H9H 0.20 TCGA-VS-A9UZ-01 19 53086997 53086997 C G ZNF701 3'UTR 0.30 TCGA-VS-A9UZ-01 19 53208271 53208271 C G ZNF611 Missense_Mutation p.K679N 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-VS-A9UZ-01 19 56156453 56156453 G A ZNF581 Silent p.P172P 0.30 TCGA-VS-A9UZ-01 19 56482038 56482038 C T NLRP8 Missense_Mutation p.S837F 0.24 tolerated(0.52) possibly_damaging(0.621) TCGA-VS-A9UZ-01 19 57640312 57640312 G C USP29 Missense_Mutation p.R90T 0.34 tolerated(0.53) benign(0.004) TCGA-VS-A9UZ-01 19 58595836 58595836 C T ZSCAN18 3'Flank 0.31 TCGA-VS-A9UZ-01 19 891000 891000 G A MED16 Silent p.L44L 0.37 TCGA-VS-A9UZ-01 1 103427806 103427806 G A COL11A1 Nonsense_Mutation p.Q1014* 0.37 TCGA-VS-A9UZ-01 1 109472767 109472767 T G GPSM2 3'UTR 0.22 TCGA-VS-A9UZ-01 1 114256052 114256052 C G PHTF1 Missense_Mutation p.R211T 0.38 deleterious(0.05) benign(0.005) TCGA-VS-A9UZ-01 1 119683312 119683312 G A WARS2 5'Flank 0.22 TCGA-VS-A9UZ-01 1 120935886 120935886 G A FCGR1B Silent p.F3F 0.35 TCGA-VS-A9UZ-01 1 12907852 12907852 C T HNRNPCL1 Silent p.V97V 0.17 TCGA-VS-A9UZ-01 1 144930789 144930789 C T PDE4DIP Intron 0.14 TCGA-VS-A9UZ-01 1 144930910 144930910 C T PDE4DIP Intron 0.20 TCGA-VS-A9UZ-01 1 144994710 144994710 G C PDE4DIP Missense_Mutation p.L8V 0.07 deleterious(0.02) benign(0.358) TCGA-VS-A9UZ-01 1 155185357 155185357 G A MTX1 3'Flank 0.29 TCGA-VS-A9UZ-01 1 155210881 155210881 C G GBA Missense_Mutation p.R8T 0.40 deleterious_low_confidence(0.05) benign(0.021) TCGA-VS-A9UZ-01 1 156821161 156821161 T - INSRR Frame_Shift_Del p.I384Sfs*18 0.28 TCGA-VS-A9UZ-01 1 158912002 158912002 C G PYHIN1 Nonsense_Mutation p.S272* 0.24 TCGA-VS-A9UZ-01 1 181741295 181741295 C T CACNA1E Silent p.N1689N 0.24 TCGA-VS-A9UZ-01 1 190423993 190423993 C T BRINP3 Missense_Mutation p.E10K 0.39 tolerated_low_confidence(0.55) benign(0.003) TCGA-VS-A9UZ-01 1 207040746 207040746 C T IL20 Silent p.C132C 0.27 TCGA-VS-A9UZ-01 1 21050639 21050639 G A SH2D5 Missense_Mutation p.R246C 0.25 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UZ-01 1 220275499 220275499 G A IARS2 Silent p.E193E 0.10 TCGA-VS-A9UZ-01 1 228471385 228471385 C T OBSCN Silent p.T3402T 0.52 TCGA-VS-A9UZ-01 1 228509535 228509535 C T OBSCN Missense_Mutation p.S5955F 0.50 benign(0.104) TCGA-VS-A9UZ-01 1 27057988 27057988 C T ARID1A Nonsense_Mutation p.Q566* 0.33 TCGA-VS-A9UZ-01 1 33959937 33959937 G A ZSCAN20 Missense_Mutation p.E665K 0.23 tolerated(1) benign(0.014) TCGA-VS-A9UZ-01 1 3644226 3644226 C T TP73 Missense_Mutation p.R293C 0.28 deleterious(0) probably_damaging(1) TCGA-VS-A9UZ-01 1 43882280 43882280 C T SZT2 Missense_Mutation p.R283C 0.41 deleterious(0) probably_damaging(0.952) TCGA-VS-A9UZ-01 1 44070975 44070975 G T PTPRF Missense_Mutation p.A1084S 0.41 tolerated(0.41) probably_damaging(0.999) TCGA-VS-A9UZ-01 1 44463371 44463371 G - SLC6A9 Frame_Shift_Del p.P656Lfs*15 0.12 TCGA-VS-A9UZ-01 1 52117664 52117664 C T OSBPL9 Missense_Mutation p.S38F 0.35 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UZ-01 1 54518862 54518862 C G TMEM59 5'UTR 0.07 TCGA-VS-A9UZ-01 1 54518920 54518920 C A TMEM59 5'UTR 0.10 TCGA-VS-A9UZ-01 1 54520114 54520114 C G TCEANC2 Missense_Mutation p.R7G 0.07 deleterious(0) probably_damaging(0.99) TCGA-VS-A9UZ-01 1 67109263 67109263 C A SGIP1 Nonsense_Mutation p.S107* 0.19 TCGA-VS-A9UZ-01 1 93602902 93602902 C T MTF2 3'UTR 0.07 TCGA-VS-A9UZ-01 1 94467220 94467220 C T ABCA4 Intron 0.42 TCGA-VS-A9UZ-01 20 17339027 17339027 A G PCSK2 Missense_Mutation p.D113G 0.07 tolerated(0.21) benign(0.004) TCGA-VS-A9UZ-01 20 31984653 31984653 G A CDK5RAP1 Missense_Mutation p.S73L 0.05 tolerated(0.05) benign(0.008) TCGA-VS-A9UZ-01 20 33173303 33173303 G A PIGU Silent p.F288F 0.19 TCGA-VS-A9UZ-01 20 33432834 33432834 G A GGT7 3'UTR 0.63 TCGA-VS-A9UZ-01 20 33735142 33735142 C T EDEM2 5'UTR 0.12 TCGA-VS-A9UZ-01 20 3765825 3765825 C G CENPB Missense_Mutation p.G436R 0.33 tolerated_low_confidence(0.41) unknown(0) TCGA-VS-A9UZ-01 20 43836152 43836152 G C SEMG1 Missense_Mutation p.D72H 0.22 deleterious(0) probably_damaging(0.999) TCGA-VS-A9UZ-01 20 47782692 47782692 G A STAU1 Missense_Mutation p.S16L 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.587) TCGA-VS-A9UZ-01 20 57430053 57430053 G A GNAS Missense_Mutation p.G578E 0.12 tolerated_low_confidence(0.24) benign(0.027) TCGA-VS-A9UZ-01 20 60756609 60756609 G A SS18L1 3'UTR 0.21 TCGA-VS-A9UZ-01 20 61391721 61391721 G A NTSR1 3'UTR 0.22 TCGA-VS-A9UZ-01 20 62595464 62595464 G A ZNF512B Silent p.V480V 0.16 TCGA-VS-A9UZ-01 20 62595992 62595992 G C ZNF512B Missense_Mutation p.S371C 0.17 deleterious(0) benign(0.285) TCGA-VS-A9UZ-01 21 35468257 35468257 C T SLC5A3 Missense_Mutation p.P254S 0.24 deleterious(0) possibly_damaging(0.697) TCGA-VS-A9UZ-01 21 36163533 36163533 C T RUNX1 3'UTR 0.14 TCGA-VS-A9UZ-01 22 21368304 21368304 C T P2RX6 5'Flank 0.30 TCGA-VS-A9UZ-01 22 22986673 22986673 G A GGTLC2 5'Flank 0.33 TCGA-VS-A9UZ-01 22 38038820 38038820 G A SH3BP1 Intron 0.35 TCGA-VS-A9UZ-01 22 38121942 38121942 C T TRIOBP Missense_Mutation p.R1127C 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VS-A9UZ-01 2 128525844 128525844 C G WDR33 Missense_Mutation p.L99F 0.27 deleterious(0.05) unknown(0) TCGA-VS-A9UZ-01 2 130832626 130832626 C T POTEF Missense_Mutation p.E807K 0.30 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-VS-A9UZ-01 2 155102362 155102362 G A GALNT13 Missense_Mutation p.D242N 0.26 deleterious(0) possibly_damaging(0.895) TCGA-VS-A9UZ-01 2 162267924 162267924 C T PSMD14 3'UTR 0.25 TCGA-VS-A9UZ-01 2 168105069 168105069 T G XIRP2 Missense_Mutation p.S2389R 0.23 benign(0.023) TCGA-VS-A9UZ-01 2 187373343 187373343 G A ZC3H15 Silent p.E388E 0.33 TCGA-VS-A9UZ-01 2 198948525 198948525 C T PLCL1 Missense_Mutation p.S95F 0.29 deleterious(0) probably_damaging(0.996) TCGA-VS-A9UZ-01 2 21224503 21224503 C G APOB 3'UTR 0.38 TCGA-VS-A9UZ-01 2 24302458 24302458 C T TP53I3 Silent p.K224K 0.30 TCGA-VS-A9UZ-01 2 27352978 27352978 G A ABHD1 Missense_Mutation p.R266K 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-VS-A9UZ-01 2 27354351 27354351 G C PREB Silent p.L395L 0.19 TCGA-VS-A9UZ-01 2 37002179 37002179 C T VIT Silent p.F257F 0.43 TCGA-VS-A9UZ-01 2 48602893 48602893 G A FOXN2 3'UTR 0.04 TCGA-VS-A9UZ-01 2 70438797 70438797 G C TIA1 3'UTR 0.32 TCGA-VS-A9UZ-01 2 71577061 71577061 C T ZNF638 Missense_Mutation p.S326F 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-VS-A9UZ-01 2 95514947 95514947 G A RNU6-1320P 5'Flank 0.07 TCGA-VS-A9UZ-01 3 105294238 105294238 C T ALCAM 3'UTR 0.32 TCGA-VS-A9UZ-01 3 123665700 123665700 C T CCDC14 Missense_Mutation p.R391K 0.39 tolerated(0.64) possibly_damaging(0.567) TCGA-VS-A9UZ-01 3 128875748 128875748 G A ISY1 Silent p.L32L 0.34 TCGA-VS-A9UZ-01 3 129150330 129150330 G C MBD4 3'UTR 0.30 TCGA-VS-A9UZ-01 3 130720166 130720166 C T ATP2C1 Intron 0.41 TCGA-VS-A9UZ-01 3 141932394 141932394 C T GK5 Silent p.Q97Q 0.38 TCGA-VS-A9UZ-01 3 142984767 142984767 C T SLC9A9 3'UTR 0.31 TCGA-VS-A9UZ-01 3 148773109 148773109 G A HLTF Missense_Mutation p.S485F 0.24 deleterious(0) probably_damaging(0.991) TCGA-VS-A9UZ-01 3 167090707 167090707 T A ZBBX 5'UTR 0.22 TCGA-VS-A9UZ-01 3 167090739 167090739 C T ZBBX Splice_Site 0.25 TCGA-VS-A9UZ-01 3 178928079 178928079 G C PIK3CA Missense_Mutation p.E453Q 0.48 tolerated(0.07) probably_damaging(0.928) TCGA-VS-A9UZ-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.50 deleterious(0.02) probably_damaging(0.959) TCGA-VS-A9UZ-01 3 197807449 197807449 C T ANKRD18DP RNA 0.35 TCGA-VS-A9UZ-01 3 25671845 25671845 G A TOP2B Silent p.L502L 0.25 TCGA-VS-A9UZ-01 3 85008702 85008702 G A CADM2 5'UTR 0.29 TCGA-VS-A9UZ-01 4 123329146 123329146 G A ADAD1 Missense_Mutation p.D270N 0.41 deleterious(0) probably_damaging(1) TCGA-VS-A9UZ-01 4 149000040 149000040 C T NR3C2 3'UTR 0.08 TCGA-VS-A9UZ-01 4 24521902 24521902 G A MIR573 RNA 0.27 TCGA-VS-A9UZ-01 4 53786946 53786946 C T SCFD2 Silent p.R551R 0.06 TCGA-VS-A9UZ-01 4 57181882 57181882 G A KIAA1211 Silent p.Q738Q 0.41 TCGA-VS-A9UZ-01 4 62801723 62801723 C G LPHN3 Missense_Mutation p.I725M 0.17 deleterious(0) possibly_damaging(0.629) TCGA-VS-A9UZ-01 4 68490876 68490876 C T UBA6 Missense_Mutation p.E850K 0.19 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UZ-01 4 83295030 83295030 G A HNRNPD 5'UTR 0.25 TCGA-VS-A9UZ-01 4 8603170 8603170 C T CPZ Missense_Mutation p.R148C 0.29 deleterious(0) probably_damaging(0.927) TCGA-VS-A9UZ-01 5 135513137 135513137 C G SMAD5 Missense_Mutation p.S455C 0.23 deleterious(0) possibly_damaging(0.79) TCGA-VS-A9UZ-01 5 138643022 138643022 T C MATR3 5'UTR 0.30 TCGA-VS-A9UZ-01 5 140627317 140627317 G A PCDHB15 Missense_Mutation p.R724H 0.47 tolerated_low_confidence(0.11) possibly_damaging(0.656) TCGA-VS-A9UZ-01 5 140755684 140755684 C T PCDHGA6 Silent p.L678L 0.34 TCGA-VS-A9UZ-01 5 140870050 140870050 G A PCDHGC5 Missense_Mutation p.E415K 0.33 deleterious(0) probably_damaging(0.997) TCGA-VS-A9UZ-01 5 14488925 14488925 T G TRIO Intron 0.43 TCGA-VS-A9UZ-01 5 156772685 156772685 C T FNDC9 5'UTR 0.24 TCGA-VS-A9UZ-01 5 176308026 176308026 C T HK3 3'UTR 0.42 TCGA-VS-A9UZ-01 5 176863577 176863577 G A GRK6 Intron 0.30 TCGA-VS-A9UZ-01 5 179069360 179069360 C T C5orf60 Missense_Mutation p.E272K 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.502) TCGA-VS-A9UZ-01 5 1879664 1879664 G A IRX4 Silent p.G230G 0.33 TCGA-VS-A9UZ-01 5 65349712 65349712 C G ERBB2IP Missense_Mutation p.L856V 0.26 deleterious(0) benign(0.164) TCGA-VS-A9UZ-01 5 65349947 65349947 C T ERBB2IP Missense_Mutation p.S934F 0.25 deleterious(0) possibly_damaging(0.836) TCGA-VS-A9UZ-01 5 65350168 65350168 C T ERBB2IP Nonsense_Mutation p.Q1008* 0.27 TCGA-VS-A9UZ-01 5 82948583 82948583 C T HAPLN1 Missense_Mutation p.G54D 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-VS-A9UZ-01 5 93489579 93489579 C A KIAA0825 3'UTR 0.41 TCGA-VS-A9UZ-01 6 127794391 127794391 G A SOGA3 3'UTR 0.27 TCGA-VS-A9UZ-01 6 132029634 132029634 C T CTAGE9 3'UTR 0.08 TCGA-VS-A9UZ-01 6 149795653 149795653 G A ZC3H12D Silent p.F9F 0.38 TCGA-VS-A9UZ-01 6 155635507 155635507 C T TFB1M Missense_Mutation p.R19Q 0.33 tolerated(0.1) possibly_damaging(0.552) TCGA-VS-A9UZ-01 6 160525970 160525970 C T IGF2R Nonsense_Mutation p.Q2444* 0.58 TCGA-VS-A9UZ-01 6 168709386 168709386 C T DACT2 Missense_Mutation p.E351K 0.12 tolerated(0.89) benign(0.027) TCGA-VS-A9UZ-01 6 18171619 18171619 G C KDM1B Missense_Mutation p.R148T 0.07 tolerated(0.22) probably_damaging(0.958) TCGA-VS-A9UZ-01 6 26104220 26104220 T C HIST1H4C Silent p.G15G 0.60 TCGA-VS-A9UZ-01 6 27799146 27799146 C T HIST1H4K Missense_Mutation p.E54K 0.67 deleterious(0) probably_damaging(0.977) TCGA-VS-A9UZ-01 6 2838113 2838113 C T SERPINB1 Intron 0.52 TCGA-VS-A9UZ-01 6 32261438 32261438 C T C6orf10 Missense_Mutation p.V338I 0.64 tolerated(0.09) probably_damaging(0.971) TCGA-VS-A9UZ-01 6 35801847 35801847 C T SRPK1 3'UTR 0.58 TCGA-VS-A9UZ-01 6 3722903 3722903 A C PXDC1 3'UTR 0.65 TCGA-VS-A9UZ-01 6 56471874 56471874 G C DST Intron 0.57 TCGA-VS-A9UZ-01 6 84569396 84569396 G T CYB5R4 5'UTR 0.23 TCGA-VS-A9UZ-01 7 102194916 102194916 G C SPDYE2 Missense_Mutation p.E91Q 0.23 tolerated(0.3) probably_damaging(0.985) TCGA-VS-A9UZ-01 7 105925409 105925409 C T NAMPT 5'UTR 0.33 TCGA-VS-A9UZ-01 7 111379235 111379235 C G DOCK4 Missense_Mutation p.E1720D 0.19 tolerated_low_confidence(0.86) benign(0.003) TCGA-VS-A9UZ-01 7 129756310 129756310 T G KLHDC10 Missense_Mutation p.S93R 0.37 deleterious(0) probably_damaging(1) TCGA-VS-A9UZ-01 7 131912329 131912329 G A PLXNA4 Missense_Mutation p.S588L 0.24 deleterious(0.02) possibly_damaging(0.686) TCGA-VS-A9UZ-01 7 135613391 135613391 C G MTPN 3'UTR 0.11 TCGA-VS-A9UZ-01 7 139717579 139717579 G C TBXAS1 Missense_Mutation p.L538F 0.41 deleterious(0.01) probably_damaging(0.98) TCGA-VS-A9UZ-01 7 14028670 14028670 C T ETV1 Missense_Mutation p.G3E 0.34 deleterious(0.01) possibly_damaging(0.711) TCGA-VS-A9UZ-01 7 141464394 141464394 G A TAS2R3 Missense_Mutation p.A146T 0.29 tolerated(0.26) benign(0.002) TCGA-VS-A9UZ-01 7 149171886 149171886 G A ZNF746 Silent p.S509S 0.55 TCGA-VS-A9UZ-01 7 150325102 150325102 C T GIMAP6 Missense_Mutation p.R195H 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-VS-A9UZ-01 7 24892235 24892235 G A OSBPL3 Missense_Mutation p.S349L 0.23 deleterious(0) probably_damaging(0.96) TCGA-VS-A9UZ-01 7 28862294 28862294 G A CREB5 3'UTR 0.50 TCGA-VS-A9UZ-01 7 38402635 38402635 G C TRGV2 Missense_Mutation p.P62A 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-VS-A9UZ-01 8 144457802 144457816 AGCTGCAGATGCGGA - RHPN1 In_Frame_Del p.E47_T52delinsA 0.37 TCGA-VS-A9UZ-01 8 27295350 27295350 G A PTK2B Silent p.Q532Q 0.29 TCGA-VS-A9UZ-01 8 56437848 56437848 C T XKR4 3'UTR 0.27 TCGA-VS-A9UZ-01 8 61655634 61655634 C T CHD7 Missense_Mutation p.P548L 0.22 possibly_damaging(0.726) TCGA-VS-A9UZ-01 9 115336607 115336607 G T KIAA1958 Missense_Mutation p.D83Y 0.24 deleterious(0) probably_damaging(0.965) TCGA-VS-A9UZ-01 9 117853062 117853062 G A TNC Missense_Mutation p.P79L 0.43 tolerated(0.11) benign(0.002) TCGA-VS-A9UZ-01 9 131222929 131222929 C T ODF2 Intron 0.20 TCGA-VS-A9UZ-01 9 135042228 135042228 C T NTNG2 Silent p.L4L 0.42 TCGA-VS-A9UZ-01 9 136389831 136389831 C T TMEM8C Splice_Site p.X45_splice 0.24 TCGA-VS-A9UZ-01 9 138012393 138012393 C G OLFM1 3'UTR 0.26 TCGA-VS-A9UZ-01 9 139890153 139890153 C T CLIC3 Missense_Mutation p.M30I 0.38 deleterious(0.02) benign(0.034) TCGA-VS-A9UZ-01 9 34834290 34834290 G A FAM205B RNA 0.12 TCGA-VS-A9UZ-01 9 35450334 35450334 G A ATP8B5P RNA 0.39 TCGA-VS-A9UZ-01 9 5920114 5920114 C G KIAA2026 Missense_Mutation p.R1961T 0.10 deleterious(0.03) benign(0.083) TCGA-VS-A9UZ-01 9 78973842 78973842 G T PCSK5 3'UTR 0.29 TCGA-VS-A9UZ-01 X 100880613 100880613 G A ARMCX3 Missense_Mutation p.R215H 0.21 tolerated(0.08) probably_damaging(0.991) TCGA-VS-A9UZ-01 X 102841904 102841904 G C TCEAL4 Missense_Mutation p.E101Q 0.19 tolerated(0.08) benign(0.133) TCGA-VS-A9UZ-01 X 110439701 110439701 C T PAK3 Missense_Mutation p.P450S 0.24 tolerated(0.06) probably_damaging(0.998) TCGA-VS-A9UZ-01 X 129499493 129499493 C T SLC25A14 Intron 0.20 TCGA-VS-A9UZ-01 X 131761091 131761091 C G HS6ST2 3'Flank 0.05 TCGA-VS-A9UZ-01 X 135738512 135738512 C T CD40LG Intron 0.16 TCGA-VS-A9UZ-01 X 141290592 141290592 C T MAGEC2 3'UTR 0.16 TCGA-VS-A9UZ-01 X 147030832 147030832 C T FMR1 3'UTR 0.20 TCGA-VS-A9UZ-01 X 150840759 150840759 G A PASD1 Silent p.K514K 0.16 TCGA-VS-A9UZ-01 X 15349597 15349597 C T PIGA Silent p.T152T 0.17 TCGA-VS-A9UZ-01 X 153582326 153582326 G C FLNA Missense_Mutation p.N1881K 0.24 deleterious(0.01) possibly_damaging(0.737) TCGA-VS-A9UZ-01 X 17751211 17751211 G C NHS 3'UTR 0.20 TCGA-VS-A9UZ-01 X 19410181 19410181 G C MAP3K15 Missense_Mutation p.I790M 0.28 deleterious(0) probably_damaging(0.993) TCGA-VS-A9UZ-01 X 31676242 31676242 C T DMD Missense_Mutation p.R2631H 0.21 possibly_damaging(0.715) TCGA-VS-A9UZ-01 X 47065735 47065735 G A UBA1 Silent p.V610V 0.24 TCGA-VS-A9UZ-01 X 54275225 54275225 G A WNK3 Silent p.L1186L 0.04 TCGA-VS-A9UZ-01 X 54975509 54975509 G A PFKFB1 Missense_Mutation p.A331V 0.15 benign(0.061) TCGA-VS-A9UZ-01 X 62863888 62863888 C T ARHGEF9 Missense_Mutation p.M447I 0.23 tolerated(0.06) benign(0) TCGA-VS-A9UZ-01 X 64136794 64136794 G A ZC4H2 3'UTR 0.21 TCGA-VS-A9UZ-01 X 77381360 77381360 C A PGK1 3'UTR 0.11 TCGA-VS-A9UZ-01 X 92964582 92964582 C T FAM133A Missense_Mutation p.S55L 0.22 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-VS-A9UZ-01 X 96197014 96197014 C T DIAPH2 Intron 0.26 TCGA-VS-A9V0-01 10 115391289 115391289 C G NRAP Missense_Mutation p.Q607H 0.49 tolerated(0.31) possibly_damaging(0.677) TCGA-VS-A9V0-01 11 14264896 14264896 G A SPON1 RNA 0.67 TCGA-VS-A9V0-01 11 4566579 4566579 A G OR52M1 Missense_Mutation p.I53M 0.32 tolerated(0.46) benign(0.001) TCGA-VS-A9V0-01 11 67013504 67013504 C G KDM2A Missense_Mutation p.Q628E 0.36 tolerated(0.34) benign(0.08) TCGA-VS-A9V0-01 12 89744441 89744441 T - DUSP6 Frame_Shift_Del p.K254Nfs*26 0.27 TCGA-VS-A9V0-01 12 90028630 90028630 T G ATP2B1 Missense_Mutation p.I238L 0.10 tolerated(0.11) benign(0.253) TCGA-VS-A9V0-01 14 35343728 35343728 T C BAZ1A Missense_Mutation p.K28R 0.45 tolerated(0.49) benign(0.005) TCGA-VS-A9V0-01 15 23282958 23282958 A G HERC2P2 RNA 0.09 TCGA-VS-A9V0-01 15 23811851 23811851 G A MKRN3 Missense_Mutation p.D308N 0.30 deleterious(0) probably_damaging(0.984) TCGA-VS-A9V0-01 15 75763151 75763151 C A PTPN9 Missense_Mutation p.R410I 0.58 tolerated(0.26) probably_damaging(0.996) TCGA-VS-A9V0-01 15 81295711 81295711 C T MESDC1 3'UTR 0.29 TCGA-VS-A9V0-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.56 deleterious(0.03) probably_damaging(1) TCGA-VS-A9V0-01 18 12325259 12325259 G A TUBB6 Silent p.E157E 0.16 TCGA-VS-A9V0-01 19 44764142 44764142 C T ZNF233 5'UTR 0.76 TCGA-VS-A9V0-01 19 59023078 59023078 G - SLC27A5 Frame_Shift_Del p.P82Qfs*10 0.56 TCGA-VS-A9V0-01 1 184761544 184761544 A C FAM129A 3'UTR 0.42 TCGA-VS-A9V0-01 1 190067555 190067555 G A BRINP3 Missense_Mutation p.R632C 0.29 deleterious(0) probably_damaging(0.996) TCGA-VS-A9V0-01 1 210014250 210014250 G A DIEXF Silent p.S445S 0.36 TCGA-VS-A9V0-01 1 220752825 220752825 C A MARK1 Missense_Mutation p.R61S 0.37 deleterious(0) probably_damaging(0.984) TCGA-VS-A9V0-01 1 38283134 38283134 C T MTF1 Silent p.E596E 0.11 TCGA-VS-A9V0-01 1 40228311 40228311 C T PPIE 3'UTR 0.09 TCGA-VS-A9V0-01 1 70504365 70504365 G A LRRC7 Missense_Mutation p.R915H 0.25 tolerated_low_confidence(0.19) benign(0.015) TCGA-VS-A9V0-01 1 75009730 75009730 G A TNNI3K 3'UTR 0.50 TCGA-VS-A9V0-01 20 62126452 62126452 C T EEF1A2 Silent p.A109A 0.40 TCGA-VS-A9V0-01 21 42729060 42729060 A G FAM3B Missense_Mutation p.N215S 0.28 deleterious(0.01) possibly_damaging(0.879) TCGA-VS-A9V0-01 21 43220681 43220681 A T PRDM15 3'Flank 0.25 TCGA-VS-A9V0-01 21 47738077 47738077 G C C21orf58 Missense_Mutation p.A53G 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.567) TCGA-VS-A9V0-01 22 26423518 26423518 T C MYO18B Silent p.S2526S 0.37 TCGA-VS-A9V0-01 22 38150949 38150949 A C TRIOBP Silent p.T1815T 0.37 TCGA-VS-A9V0-01 22 40415273 40415273 C T FAM83F Silent p.D197D 0.52 TCGA-VS-A9V0-01 22 41566432 41566432 G A EP300 Missense_Mutation p.A1437T 0.68 probably_damaging(0.999) TCGA-VS-A9V0-01 22 45243884 45243884 C A ARHGAP8 Silent p.S356S 0.76 TCGA-VS-A9V0-01 2 118732791 118732791 C T CCDC93 Silent p.E241E 0.42 TCGA-VS-A9V0-01 2 125622988 125622988 G A CNTNAP5 Missense_Mutation p.R1107Q 0.45 deleterious(0) possibly_damaging(0.871) TCGA-VS-A9V0-01 2 173913334 173913334 A G RAPGEF4 Missense_Mutation p.I954V 0.31 tolerated(0.1) benign(0.432) TCGA-VS-A9V0-01 2 220337049 220337049 C T SPEG Silent p.A1312A 0.64 TCGA-VS-A9V0-01 2 229889294 229889294 T C PID1 3'UTR 0.09 TCGA-VS-A9V0-01 2 280116 280116 G A FAM150B 3'UTR 0.38 TCGA-VS-A9V0-01 2 50148427 50148427 C T NRXN1 3'UTR 0.24 TCGA-VS-A9V0-01 2 50724627 50724627 G C NRXN1 Missense_Mutation p.T948S 0.26 tolerated(0.08) benign(0.259) TCGA-VS-A9V0-01 2 97007561 97007561 G A NCAPH Silent p.R67R 0.18 TCGA-VS-A9V0-01 2 99163148 99163148 C A INPP4A Missense_Mutation p.T385N 0.51 tolerated(0.19) benign(0.171) TCGA-VS-A9V0-01 3 126260681 126260681 C A CHST13 Missense_Mutation p.L96M 0.26 deleterious(0.04) possibly_damaging(0.897) TCGA-VS-A9V0-01 3 156865732 156865732 G C CCNL1 3'UTR 0.32 TCGA-VS-A9V0-01 3 17051292 17051292 G T PLCL2 Missense_Mutation p.V26F 0.43 deleterious(0) benign(0.078) TCGA-VS-A9V0-01 4 13605904 13605904 C T BOD1L1 Missense_Mutation p.D874N 0.40 possibly_damaging(0.884) TCGA-VS-A9V0-01 4 145580923 145580923 C - HHIP Frame_Shift_Del p.P256Lfs*21 0.27 TCGA-VS-A9V0-01 4 153247288 153247288 C A FBXW7 Missense_Mutation p.R505L 0.42 deleterious(0) probably_damaging(1) TCGA-VS-A9V0-01 4 156634301 156634301 T G GUCY1A3 Missense_Mutation p.L380V 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-VS-A9V0-01 4 16172282 16172282 T C TAPT1 Missense_Mutation p.Y436C 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A9V0-01 4 16507588 16507588 C T LDB2 Intron 0.36 TCGA-VS-A9V0-01 4 187518199 187518199 A T FAT1 Silent p.A4165A 0.38 TCGA-VS-A9V0-01 4 20568984 20568984 G A SLIT2 Missense_Mutation p.R942Q 0.33 tolerated(0.24) possibly_damaging(0.867) TCGA-VS-A9V0-01 4 26407815 26407815 T C RBPJ Silent p.Y39Y 0.33 TCGA-VS-A9V0-01 4 83294718 83294718 C T HNRNPD Silent p.A38A 0.13 TCGA-VS-A9V0-01 5 140215201 140215201 C T PCDHA7 Silent p.S411S 0.31 TCGA-VS-A9V0-01 5 149435856 149435856 G A CSF1R Missense_Mutation p.H790Y 0.27 deleterious(0.01) possibly_damaging(0.834) TCGA-VS-A9V0-01 5 37298985 37298985 G A NUP155 Missense_Mutation p.R1260C 0.11 deleterious(0) probably_damaging(0.997) TCGA-VS-A9V0-01 6 145115013 145115013 G T UTRN Missense_Mutation p.Q2988H 0.36 deleterious(0) probably_damaging(0.947) TCGA-VS-A9V0-01 6 44197463 44197463 C G SLC29A1 Silent p.V83V 0.42 TCGA-VS-A9V0-01 7 155090344 155090344 G A INSIG1 Missense_Mutation p.E117K 0.46 tolerated(0.1) probably_damaging(0.984) TCGA-VS-A9V0-01 7 1578849 1578849 G A MAFK Silent p.P7P 0.42 TCGA-VS-A9V0-01 7 30174653 30174653 A C MTURN 5'UTR 0.33 TCGA-VS-A9V0-01 8 113314019 113314019 T A CSMD3 Intron 0.21 TCGA-VS-A9V0-01 8 98289225 98289225 T C TSPYL5 Missense_Mutation p.E283G 0.68 deleterious(0) probably_damaging(1) TCGA-VS-A9V0-01 9 114985671 114985671 G C PTBP3 3'UTR 0.62 TCGA-VS-A9V0-01 9 87487170 87487170 C G NTRK2 Intron 0.54 TCGA-VS-A9V0-01 X 106070599 106070599 G T TBC1D8B Intron 0.43 TCGA-VS-A9V0-01 X 133551448 133551448 T G PHF6 Intron 0.40 TCGA-VS-A9V0-01 X 135289311 135289311 C T FHL1 Missense_Mutation p.S98F 0.45 deleterious(0.03) benign(0.022) TCGA-VS-A9V0-01 X 154490422 154490422 C A RAB39B Missense_Mutation p.W103L 0.50 deleterious(0) probably_damaging(1) TCGA-VS-A9V0-01 X 48418913 48418913 C T TBC1D25 Silent p.L539L 0.39 TCGA-VS-A9V0-01 X 75648618 75648618 G C MAGEE1 Missense_Mutation p.G99R 0.30 tolerated_low_confidence(0.09) benign(0.164) TCGA-VS-A9V0-01 X 77224985 77224985 C G PGAM4 Missense_Mutation p.E51Q 0.18 tolerated(0.22) benign(0.391) TCGA-VS-A9V0-01 X 83577018 83577018 A T HDX Missense_Mutation p.L651Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-VS-A9V0-01 X 9728830 9728830 G T GPR143 Missense_Mutation p.P96Q 0.33 deleterious(0) probably_damaging(0.988) TCGA-VS-A9V1-01 10 100219130 100219130 C A HPSE2 3'UTR 0.23 TCGA-VS-A9V1-01 10 100219131 100219131 C A HPSE2 3'UTR 0.23 TCGA-VS-A9V1-01 10 105185262 105185262 G A PDCD11 Silent p.G1095G 0.33 TCGA-VS-A9V1-01 10 118306822 118306822 C T PNLIP Silent p.Y21Y 0.37 TCGA-VS-A9V1-01 10 119003525 119003525 G C SLC18A2 Missense_Mutation p.K55N 0.34 tolerated(0.5) benign(0.006) TCGA-VS-A9V1-01 10 120809453 120809453 C G EIF3A Missense_Mutation p.E840Q 0.44 tolerated(0.07) unknown(0) TCGA-VS-A9V1-01 10 126308032 126308032 C T FAM53B 3'UTR 0.29 TCGA-VS-A9V1-01 10 135113598 135113598 G A TUBGCP2 Missense_Mutation p.S57F 0.16 deleterious(0) probably_damaging(0.967) TCGA-VS-A9V1-01 10 21806506 21806506 G A SKIDA1 Silent p.L82L 0.28 TCGA-VS-A9V1-01 10 25464485 25464485 G A GPR158 Missense_Mutation p.A46T 0.26 tolerated(0.29) benign(0.026) TCGA-VS-A9V1-01 10 25464486 25464486 C A GPR158 Missense_Mutation p.A46D 0.27 tolerated(0.34) benign(0.001) TCGA-VS-A9V1-01 10 30306821 30306821 C G KIAA1462 Missense_Mutation p.E1357D 0.26 deleterious(0) probably_damaging(0.998) TCGA-VS-A9V1-01 10 65132757 65132757 G C JMJD1C Intron 0.27 TCGA-VS-A9V1-01 10 75910710 75910710 C G AP3M1 5'UTR 0.32 TCGA-VS-A9V1-01 10 85974226 85974226 C A CDHR1 Missense_Mutation p.T810N 0.44 tolerated_low_confidence(0.1) benign(0.365) TCGA-VS-A9V1-01 10 85974559 85974559 A G CDHR1 3'UTR 0.53 TCGA-VS-A9V1-01 10 90562643 90562643 G C LIPM 5'UTR 0.25 TCGA-VS-A9V1-01 10 93754305 93754305 C G BTAF1 Silent p.L1071L 0.31 TCGA-VS-A9V1-01 10 97769596 97769596 G A CC2D2B Silent p.K12K 0.28 TCGA-VS-A9V1-01 11 107197511 107197511 G A CWF19L2 3'UTR 0.38 TCGA-VS-A9V1-01 11 110333395 110333395 T C FDX1 3'UTR 0.35 TCGA-VS-A9V1-01 11 111625816 111625816 G A PPP2R1B Silent p.L282L 0.25 TCGA-VS-A9V1-01 11 113684531 113684531 G A USP28 Intron 0.44 TCGA-VS-A9V1-01 11 116692051 116692051 C G APOA4 Silent p.L241L 0.24 TCGA-VS-A9V1-01 11 117063041 117063041 C T SIDT2 Silent p.L648L 0.32 TCGA-VS-A9V1-01 11 122968572 122968572 C T CLMP Silent p.L39L 0.25 TCGA-VS-A9V1-01 11 124748222 124748222 G C ROBO3 Silent p.L1070L 0.31 TCGA-VS-A9V1-01 11 125828725 125828725 C G CDON 3'UTR 0.39 TCGA-VS-A9V1-01 11 129769829 129769829 T C PRDM10 3'UTR 0.34 TCGA-VS-A9V1-01 11 3829543 3829543 G C PGAP2 5'Flank 0.18 TCGA-VS-A9V1-01 11 47199578 47199578 C G PACSIN3 Missense_Mutation p.M393I 0.16 tolerated(0.62) benign(0.003) TCGA-VS-A9V1-01 11 6503417 6503417 C T TIMM10B Missense_Mutation p.A93V 0.20 tolerated(0.2) benign(0.058) TCGA-VS-A9V1-01 11 67817525 67817525 G A TCIRG1 Missense_Mutation p.E704K 0.24 tolerated(0.18) benign(0.062) TCGA-VS-A9V1-01 11 68747555 68747555 G A MRGPRD Missense_Mutation p.R301C 0.38 deleterious(0) possibly_damaging(0.764) TCGA-VS-A9V1-01 11 94862295 94862295 C T ENDOD1 Missense_Mutation p.A352V 0.43 tolerated(0.24) benign(0.007) TCGA-VS-A9V1-01 12 100219164 100219164 G C ANKS1B Missense_Mutation p.I46M 0.36 tolerated(0.29) benign(0.159) TCGA-VS-A9V1-01 12 108603968 108603968 G C WSCD2 Missense_Mutation p.V190L 0.26 tolerated(0.07) benign(0.029) TCGA-VS-A9V1-01 12 125397115 125397115 G T UBC Missense_Mutation p.D401E 0.32 tolerated(0.06) benign(0.257) TCGA-VS-A9V1-01 12 133362967 133362967 G A GOLGA3 Silent p.L1027L 0.24 TCGA-VS-A9V1-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.21 deleterious(0) possibly_damaging(0.479) TCGA-VS-A9V1-01 12 30882119 30882119 C T CAPRIN2 Silent p.K415K 0.20 TCGA-VS-A9V1-01 12 49484154 49484154 C G DHH Missense_Mutation p.A227P 0.27 deleterious(0) probably_damaging(0.971) TCGA-VS-A9V1-01 12 55846255 55846255 G A OR6C2 Silent p.G86G 0.20 TCGA-VS-A9V1-01 12 56093680 56093680 C A ITGA7 Intron 0.24 TCGA-VS-A9V1-01 12 56121091 56121091 G C CD63 Silent p.V33V 0.33 TCGA-VS-A9V1-01 12 67072769 67072769 C T GRIP1 5'Flank 0.40 TCGA-VS-A9V1-01 12 6857696 6857696 C G MLF2 3'UTR 0.31 TCGA-VS-A9V1-01 12 7633803 7633803 C T CD163 Missense_Mutation p.M1099I 0.21 tolerated(0.58) probably_damaging(0.991) TCGA-VS-A9V1-01 12 77246747 77246747 G A ZDHHC17 3'UTR 0.45 TCGA-VS-A9V1-01 12 772666 772666 C T NINJ2 5'UTR 0.33 TCGA-VS-A9V1-01 12 994703 994703 C T WNK1 Missense_Mutation p.S1578F 0.33 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VS-A9V1-01 12 994708 994708 C G WNK1 Missense_Mutation p.P1580A 0.29 tolerated_low_confidence(0.06) possibly_damaging(0.849) TCGA-VS-A9V1-01 13 28519426 28519426 C G ATP5EP2 Silent p.L10L 0.45 TCGA-VS-A9V1-01 13 33680996 33680996 G T STARD13 Silent p.L1041L 0.31 TCGA-VS-A9V1-01 13 41941668 41941668 G C NAA16 Missense_Mutation p.E545Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V1-01 13 99489849 99489849 C A DOCK9 Missense_Mutation p.D1382Y 0.24 deleterious(0) probably_damaging(0.914) TCGA-VS-A9V1-01 14 101507128 101507128 G C MIR376A1 RNA 0.34 TCGA-VS-A9V1-01 14 20612222 20612222 G C OR4N5 Missense_Mutation p.G110R 0.28 deleterious(0.01) benign(0.157) TCGA-VS-A9V1-01 14 22102265 22102265 G A OR10G2 Missense_Mutation p.T245I 0.24 deleterious(0) probably_damaging(1) TCGA-VS-A9V1-01 14 32626102 32626102 C G ARHGAP5 3'UTR 0.28 TCGA-VS-A9V1-01 14 51226951 51226951 C G NIN Missense_Mutation p.E675Q 0.31 tolerated(0.7) possibly_damaging(0.89) TCGA-VS-A9V1-01 14 64151628 64151628 A T SGPP1 3'UTR 0.31 TCGA-VS-A9V1-01 14 64998616 64998616 G A RP11-973N13.4 Intron 0.40 TCGA-VS-A9V1-01 14 66209402 66209402 C G FUT8 3'UTR 0.31 TCGA-VS-A9V1-01 14 75408582 75408582 C T PGF 3'UTR 0.18 TCGA-VS-A9V1-01 14 77787859 77787859 C T GSTZ1 Intron 0.30 TCGA-VS-A9V1-01 14 78174427 78174427 C G SLIRP 5'UTR 0.24 TCGA-VS-A9V1-01 14 81943082 81943082 G A SEL1L 3'UTR 0.26 TCGA-VS-A9V1-01 14 93685071 93685071 C G UBR7 Missense_Mutation p.S267C 0.18 tolerated(0.16) benign(0.002) TCGA-VS-A9V1-01 14 94962723 94962723 A G SERPINA12 Silent p.L298L 0.27 TCGA-VS-A9V1-01 14 99959163 99959163 G C CCNK Missense_Mutation p.R50P 0.20 deleterious(0) probably_damaging(1) TCGA-VS-A9V1-01 15 31232859 31232859 G A MTMR10 3'UTR 0.25 TCGA-VS-A9V1-01 15 31233969 31233969 G A MTMR10 Missense_Mutation p.H680Y 0.19 tolerated(0.16) possibly_damaging(0.804) TCGA-VS-A9V1-01 15 50534544 50534544 G C HDC Missense_Mutation p.I634M 0.38 tolerated_low_confidence(0.08) possibly_damaging(0.729) TCGA-VS-A9V1-01 15 50535027 50535027 G A HDC Silent p.L473L 0.28 TCGA-VS-A9V1-01 15 51839591 51839591 C G DMXL2 Missense_Mutation p.L194F 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A9V1-01 15 76430063 76430063 A T C15orf27 Silent p.G18G 0.35 TCGA-VS-A9V1-01 15 89402108 89402108 G A ACAN Missense_Mutation p.E2098K 0.37 tolerated(0.1) probably_damaging(0.998) TCGA-VS-A9V1-01 15 89871716 89871716 G C POLG Missense_Mutation p.F407L 0.33 tolerated(0.72) possibly_damaging(0.694) TCGA-VS-A9V1-01 15 90328375 90328375 G T ANPEP 3'UTR 0.31 TCGA-VS-A9V1-01 16 1421614 1421614 T G UNKL Splice_Site p.X419_splice 0.20 TCGA-VS-A9V1-01 16 19870489 19870489 T C GPRC5B 3'UTR 0.10 TCGA-VS-A9V1-01 16 2374503 2374503 C G ABCA3 Missense_Mutation p.E117Q 0.22 deleterious(0) probably_damaging(0.909) TCGA-VS-A9V1-01 16 3594264 3594264 G C NLRC3 Missense_Mutation p.T992R 0.33 tolerated(0.08) benign(0.288) TCGA-VS-A9V1-01 16 4463380 4463380 C T CORO7 Missense_Mutation p.G29E 0.24 deleterious(0) benign(0.33) TCGA-VS-A9V1-01 16 4475999 4475999 G T DNAJA3 Silent p.L39L 0.30 TCGA-VS-A9V1-01 16 69153046 69153046 C T CHTF8 Missense_Mutation p.R429K 0.29 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-VS-A9V1-01 16 71096192 71096192 G T HYDIN Silent p.P752P 0.14 TCGA-VS-A9V1-01 16 857469 857469 C T PRR25 Intron 0.22 TCGA-VS-A9V1-01 16 87734551 87734551 C T FLJ00104 3'UTR 0.26 TCGA-VS-A9V1-01 16 89862360 89862360 G T FANCA Missense_Mutation p.F320L 0.26 deleterious(0.03) benign(0.153) TCGA-VS-A9V1-01 17 1631722 1631722 G A WDR81 Missense_Mutation p.E1157K 0.35 deleterious(0.03) benign(0.332) TCGA-VS-A9V1-01 17 26727709 26727709 G C SLC46A1 Silent p.L413L 0.20 TCGA-VS-A9V1-01 17 38027717 38027717 G C ZPBP2 Missense_Mutation p.G82A 0.25 deleterious(0.04) possibly_damaging(0.816) TCGA-VS-A9V1-01 17 40832142 40832142 G A CCR10 Missense_Mutation p.A173V 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-VS-A9V1-01 17 40872398 40872398 T G EZH1 Missense_Mutation p.Y186S 0.38 tolerated(0.05) benign(0.008) TCGA-VS-A9V1-01 17 4441067 4441067 G C SPNS2 3'UTR 0.24 TCGA-VS-A9V1-01 17 46673351 46673351 G C HOXB6 3'UTR 0.28 TCGA-VS-A9V1-01 17 48252688 48252688 G A SGCA Missense_Mutation p.E352K 0.31 deleterious(0.04) benign(0.305) TCGA-VS-A9V1-01 17 58073216 58073216 T C RP11-178C3.2 RNA 0.10 TCGA-VS-A9V1-01 17 63631826 63631826 T C CEP112 3'UTR 0.30 TCGA-VS-A9V1-01 17 74324934 74324934 G C PRPSAP1 Silent p.S215S 0.40 TCGA-VS-A9V1-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.29 deleterious(0) probably_damaging(0.985) TCGA-VS-A9V1-01 17 76355155 76355155 G T SOCS3 Missense_Mutation p.P8T 0.38 tolerated(0.17) benign(0.038) TCGA-VS-A9V1-01 17 79202549 79202549 C A ENTHD2 3'UTR 0.40 TCGA-VS-A9V1-01 18 14777983 14777983 G T ANKRD30B Splice_Site p.X444_splice 0.28 TCGA-VS-A9V1-01 18 21735919 21735919 C A CABYR Missense_Mutation p.P152T 0.41 deleterious(0) probably_damaging(0.983) TCGA-VS-A9V1-01 19 1468508 1468508 G A APC2 Silent p.R1736R 0.40 TCGA-VS-A9V1-01 19 1468532 1468532 A C APC2 Missense_Mutation p.E1744D 0.47 benign(0.035) TCGA-VS-A9V1-01 19 18377093 18377093 G T KIAA1683 Nonsense_Mutation p.C419* 0.62 TCGA-VS-A9V1-01 19 18507614 18507614 G C LRRC25 Missense_Mutation p.H54D 0.23 tolerated(0.27) benign(0) TCGA-VS-A9V1-01 19 33309044 33309044 G C TDRD12 Missense_Mutation p.E1122Q 0.31 tolerated(0.42) benign(0.004) TCGA-VS-A9V1-01 19 38817466 38817466 C G KCNK6 Missense_Mutation p.L186V 0.31 tolerated(0.19) benign(0.128) TCGA-VS-A9V1-01 19 39759500 39759500 T A IFNL2 Splice_Site p.X64_splice 0.43 TCGA-VS-A9V1-01 19 41355759 41355759 C T CYP2A6 Missense_Mutation p.E103K 0.16 benign(0.018) TCGA-VS-A9V1-01 19 46388509 46388509 C T IRF2BP1 Missense_Mutation p.G175E 0.18 tolerated(0.3) benign(0.172) TCGA-VS-A9V1-01 19 50381757 50381757 C G TBC1D17 Missense_Mutation p.D41E 0.24 tolerated(0.48) possibly_damaging(0.626) TCGA-VS-A9V1-01 19 55145424 55145424 G A LILRB1 Missense_Mutation p.G439S 0.34 tolerated(0.15) benign(0.07) TCGA-VS-A9V1-01 19 7764634 7764634 G C FCER2 Missense_Mutation p.Q5E 0.45 tolerated(0.97) benign(0.001) TCGA-VS-A9V1-01 1 10708093 10708093 G A CASZ1 Missense_Mutation p.P1088S 0.40 tolerated(0.25) benign(0.126) TCGA-VS-A9V1-01 1 110198863 110198863 G A GSTM4 5'UTR 0.33 TCGA-VS-A9V1-01 1 111969702 111969702 C A OVGP1 Missense_Mutation p.V13L 0.22 tolerated(1) benign(0.097) TCGA-VS-A9V1-01 1 120164512 120164512 G A ZNF697 3'UTR 0.38 TCGA-VS-A9V1-01 1 152193750 152193750 C G HRNR Missense_Mutation p.E119Q 0.31 probably_damaging(0.996) TCGA-VS-A9V1-01 1 155227411 155227411 G A SCAMP3 Silent p.C185C 0.33 TCGA-VS-A9V1-01 1 155231511 155231511 G C SCAMP3 Missense_Mutation p.I27M 0.26 tolerated(0.06) benign(0.031) TCGA-VS-A9V1-01 1 155853875 155853875 G A SYT11 3'UTR 0.19 TCGA-VS-A9V1-01 1 160209824 160209824 G T DCAF8 Nonsense_Mutation p.S129* 0.24 TCGA-VS-A9V1-01 1 167906096 167906096 C G DCAF6 5'UTR 0.27 TCGA-VS-A9V1-01 1 17666211 17666211 G A PADI4 Silent p.L185L 0.27 TCGA-VS-A9V1-01 1 19518725 19518725 T C UBR4 Missense_Mutation p.T451A 0.29 benign(0.001) TCGA-VS-A9V1-01 1 197072945 197072945 G A ASPM Silent p.Y1812Y 0.42 TCGA-VS-A9V1-01 1 202700055 202700055 C T KDM5B Silent p.V1386V 0.22 TCGA-VS-A9V1-01 1 228286053 228286053 C T ARF1 3'UTR 0.21 TCGA-VS-A9V1-01 1 233802670 233802670 G A KCNK1 Missense_Mutation p.G229R 0.53 deleterious(0) probably_damaging(1) TCGA-VS-A9V1-01 1 236205561 236205561 C G NID1 Missense_Mutation p.V262L 0.20 deleterious(0.01) benign(0.393) TCGA-VS-A9V1-01 1 247020997 247020997 C T AHCTF1 Missense_Mutation p.E1427K 0.31 tolerated(0.1) benign(0.056) TCGA-VS-A9V1-01 1 248789842 248789842 C T OR2T11 Missense_Mutation p.M196I 0.29 tolerated(0.14) probably_damaging(0.983) TCGA-VS-A9V1-01 1 29041186 29041186 C G GMEB1 Missense_Mutation p.I541M 0.25 deleterious(0.01) possibly_damaging(0.564) TCGA-VS-A9V1-01 1 53387303 53387303 G A ECHDC2 Missense_Mutation p.R15W 0.44 tolerated(0.13) benign(0) TCGA-VS-A9V1-01 1 54273350 54273350 G C NDC1 Silent p.L290L 0.27 TCGA-VS-A9V1-01 1 58716176 58716176 G A DAB1 5'UTR 0.38 TCGA-VS-A9V1-01 1 63997646 63997646 G C EFCAB7 Missense_Mutation p.D115H 0.34 deleterious(0) probably_damaging(1) TCGA-VS-A9V1-01 1 6533117 6533117 C T PLEKHG5 Missense_Mutation p.E384K 0.36 tolerated(0.24) benign(0.051) TCGA-VS-A9V1-01 1 75037949 75037949 G T C1orf173 Missense_Mutation p.L1149I 0.48 tolerated(0.23) benign(0.097) TCGA-VS-A9V1-01 1 85020709 85020709 G C CTBS Silent p.V377V 0.22 TCGA-VS-A9V1-01 1 95303313 95303313 T G SLC44A3 Missense_Mutation p.C186G 0.32 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V1-01 20 20258066 20258066 C T C20orf26 Silent p.F920F 0.36 TCGA-VS-A9V1-01 20 270239 270239 G T C20orf96 Missense_Mutation p.H50N 0.42 tolerated(0.43) benign(0) TCGA-VS-A9V1-01 20 43995995 43995995 C A SYS1 3'UTR 0.23 TCGA-VS-A9V1-01 20 44470729 44470729 C A SNX21 3'Flank 0.11 TCGA-VS-A9V1-01 20 57599301 57599301 C T TUBB1 Silent p.L273L 0.20 TCGA-VS-A9V1-01 20 61341265 61341265 G A NTSR1 Missense_Mutation p.V236I 0.59 tolerated(0.14) benign(0.091) TCGA-VS-A9V1-01 22 38212212 38212212 G A GCAT Missense_Mutation p.R357H 0.24 deleterious(0.03) possibly_damaging(0.751) TCGA-VS-A9V1-01 22 43019853 43019853 G C CYB5R3 Silent p.L258L 0.29 TCGA-VS-A9V1-01 22 50899036 50899037 - A SBF1 Frame_Shift_Ins p.A1025Cfs*63 0.17 TCGA-VS-A9V1-01 2 141245248 141245248 C T LRP1B Missense_Mutation p.D3061N 0.35 possibly_damaging(0.831) TCGA-VS-A9V1-01 2 149868117 149868117 C G KIF5C Nonsense_Mutation p.S934* 0.26 TCGA-VS-A9V1-01 2 160737690 160737690 C A LY75-CD302 Missense_Mutation p.W436C 0.25 deleterious(0) probably_damaging(0.99) TCGA-VS-A9V1-01 2 160737715 160737715 A T LY75-CD302 Missense_Mutation p.I428K 0.26 tolerated(0.93) benign(0.082) TCGA-VS-A9V1-01 2 17890007 17890007 G C SMC6 Missense_Mutation p.P582A 0.25 deleterious(0.01) probably_damaging(0.934) TCGA-VS-A9V1-01 2 198650731 198650731 C T BOLL 5'UTR 0.19 TCGA-VS-A9V1-01 2 20402050 20402050 G T SDC1 3'UTR 0.33 TCGA-VS-A9V1-01 2 233407629 233407629 G C CHRNG Missense_Mutation p.K214N 0.36 deleterious(0.01) possibly_damaging(0.688) TCGA-VS-A9V1-01 2 242815464 242815464 C T CXXC11 3'UTR 0.24 TCGA-VS-A9V1-01 2 25141254 25141254 G T ADCY3 Missense_Mutation p.H201Q 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-VS-A9V1-01 2 25982458 25982458 G C ASXL2 Missense_Mutation p.L278V 0.42 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V1-01 2 27666049 27666049 C G KRTCAP3 Missense_Mutation p.L128V 0.19 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V1-01 2 31600071 31600071 G A XDH Silent p.S425S 0.30 TCGA-VS-A9V1-01 2 38178585 38178585 G A RMDN2 Missense_Mutation p.R76K 0.35 tolerated_low_confidence(0.06) benign(0.018) TCGA-VS-A9V1-01 2 38224573 38224573 C T RMDN2 Silent p.S498S 0.24 TCGA-VS-A9V1-01 2 53999042 53999042 A C CHAC2 Splice_Site p.X46_splice 0.31 TCGA-VS-A9V1-01 2 71795420 71795420 C T DYSF Missense_Mutation p.S939L 0.38 deleterious(0) possibly_damaging(0.847) TCGA-VS-A9V1-01 2 74462255 74462255 G C SLC4A5 Silent p.P802P 0.23 TCGA-VS-A9V1-01 2 85065357 85065357 A T TRABD2A Intron 0.18 TCGA-VS-A9V1-01 2 86352990 86352990 G A PTCD3 Nonsense_Mutation p.W313* 0.33 TCGA-VS-A9V1-01 2 88856648 88856648 T A EIF2AK3 3'UTR 0.30 TCGA-VS-A9V1-01 2 89117812 89117812 A G AC096579.13 RNA 0.29 TCGA-VS-A9V1-01 3 10401805 10401805 G A ATP2B2 Silent p.P554P 0.34 TCGA-VS-A9V1-01 3 10491216 10491216 C G ATP2B2 Missense_Mutation p.M4I 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.746) TCGA-VS-A9V1-01 3 121366177 121366177 G A HCLS1 Nonsense_Mutation p.R93* 0.29 TCGA-VS-A9V1-01 3 140277695 140277695 C T CLSTN2 Silent p.T679T 0.26 TCGA-VS-A9V1-01 3 150916857 150916857 G C GPR171 Missense_Mutation p.A106G 0.30 tolerated(1) benign(0.083) TCGA-VS-A9V1-01 3 15609979 15609979 T A HACL1 Missense_Mutation p.I404F 0.38 deleterious(0) benign(0.241) TCGA-VS-A9V1-01 3 170150362 170150362 G A CLDN11 Missense_Mutation p.E148K 0.27 tolerated(0.15) probably_damaging(0.989) TCGA-VS-A9V1-01 3 179537653 179537653 C T PEX5L Missense_Mutation p.E312K 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A9V1-01 3 185200269 185200269 C G MAP3K13 3'UTR 0.21 TCGA-VS-A9V1-01 3 188925273 188925273 G C TPRG1 Missense_Mutation p.E34Q 0.25 tolerated(0.54) benign(0.006) TCGA-VS-A9V1-01 3 20026583 20026583 A G RAB5A 3'UTR 0.27 TCGA-VS-A9V1-01 3 45077071 45077071 G A CLEC3B Silent p.T88T 0.41 TCGA-VS-A9V1-01 3 45266659 45266659 G A TMEM158 Silent p.A287A 0.20 TCGA-VS-A9V1-01 3 48699981 48699981 G C CELSR3 Silent p.L29L 0.31 TCGA-VS-A9V1-01 3 49699025 49699025 T A BSN Silent p.P3249P 0.16 TCGA-VS-A9V1-01 3 49706646 49706646 G C BSN 3'UTR 0.44 TCGA-VS-A9V1-01 3 49866335 49866335 C T TRAIP 3'UTR 0.36 TCGA-VS-A9V1-01 3 52088152 52088152 G C DUSP7 Silent p.L252L 0.38 TCGA-VS-A9V1-01 3 52240593 52240593 G T ALAS1 Nonsense_Mutation p.E331* 0.36 TCGA-VS-A9V1-01 3 52470090 52470090 C G SEMA3G Splice_Site p.X627_splice 0.41 TCGA-VS-A9V1-01 3 64617209 64617209 G A ADAMTS9 Nonsense_Mutation p.R771* 0.28 TCGA-VS-A9V1-01 3 88101490 88101490 C A CGGBP1 3'UTR 0.31 TCGA-VS-A9V1-01 4 104579371 104579371 C T TACR3 Splice_Site p.X246_splice 0.26 TCGA-VS-A9V1-01 4 113569554 113569554 C T LARP7 Intron 0.29 TCGA-VS-A9V1-01 4 113571711 113571711 G C LARP7 Missense_Mutation p.E470D 0.21 tolerated(0.19) benign(0.02) TCGA-VS-A9V1-01 4 113571712 113571712 C T LARP7 Missense_Mutation p.P471S 0.21 tolerated(0.05) possibly_damaging(0.861) TCGA-VS-A9V1-01 4 115597482 115597482 C G UGT8 3'UTR 0.30 TCGA-VS-A9V1-01 4 146823331 146823331 T C ZNF827 Silent p.K360K 0.30 TCGA-VS-A9V1-01 4 159091349 159091349 G A FAM198B Intron 0.28 TCGA-VS-A9V1-01 4 62936574 62936574 C A LPHN3 Missense_Mutation p.T1453N 0.22 tolerated_low_confidence(0.3) benign(0.063) TCGA-VS-A9V1-01 4 78634948 78634948 G C CNOT6L 3'UTR 0.31 TCGA-VS-A9V1-01 5 127523454 127523454 C T SLC12A2 3'UTR 0.21 TCGA-VS-A9V1-01 5 129030491 129030491 A T ADAMTS19 Missense_Mutation p.Y960F 0.45 tolerated(0.64) benign(0.112) TCGA-VS-A9V1-01 5 131303704 131303704 G T ACSL6 Missense_Mutation p.L509I 0.32 tolerated(0.25) probably_damaging(0.999) TCGA-VS-A9V1-01 5 141973422 141973422 G A FGF1 3'UTR 0.29 TCGA-VS-A9V1-01 5 148748271 148748271 C G PCYOX1L 3'UTR 0.22 TCGA-VS-A9V1-01 5 177022405 177022405 G C TMED9 Missense_Mutation p.K232N 0.23 deleterious(0) possibly_damaging(0.856) TCGA-VS-A9V1-01 5 179751259 179751259 C T GFPT2 Silent p.R241R 0.28 TCGA-VS-A9V1-01 5 180582484 180582484 A T OR2V2 Missense_Mutation p.E181V 0.27 deleterious(0) probably_damaging(1) TCGA-VS-A9V1-01 5 52899285 52899285 G C NDUFS4 Silent p.S34S 0.30 TCGA-VS-A9V1-01 5 56212830 56212830 G C SETD9 3'UTR 0.60 TCGA-VS-A9V1-01 5 68578542 68578542 C A CCDC125 3'UTR 0.23 TCGA-VS-A9V1-01 5 68709919 68709919 G A RAD17 Missense_Mutation p.E616K 0.23 tolerated(0.07) benign(0.157) TCGA-VS-A9V1-01 6 110064960 110064960 C G FIG4 Missense_Mutation p.I374M 0.25 deleterious(0.04) benign(0.403) TCGA-VS-A9V1-01 6 131190917 131190917 C A EPB41L2 Missense_Mutation p.S798I 0.46 deleterious(0.04) benign(0.367) TCGA-VS-A9V1-01 6 149262556 149262556 A G UST Missense_Mutation p.T145A 0.39 deleterious(0.04) benign(0.243) TCGA-VS-A9V1-01 6 157150441 157150441 G C ARID1B Missense_Mutation p.Q541H 0.29 possibly_damaging(0.891) TCGA-VS-A9V1-01 6 160874586 160874586 C G SLC22A3 3'Flank 0.20 TCGA-VS-A9V1-01 6 161139757 161139757 A G PLG Missense_Mutation p.D328G 0.26 deleterious(0.01) possibly_damaging(0.821) TCGA-VS-A9V1-01 6 27115020 27115020 G A HIST1H2AH Missense_Mutation p.G38D 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.779) TCGA-VS-A9V1-01 6 32166821 32166821 G A NOTCH4 Missense_Mutation p.R1473C 0.32 deleterious(0) probably_damaging(0.912) TCGA-VS-A9V1-01 6 33990580 33990580 C T GRM4 3'UTR 0.11 TCGA-VS-A9V1-01 6 34214576 34214576 C G C6orf1 Silent p.L65L 0.38 TCGA-VS-A9V1-01 6 42931368 42931368 G A GNMT Missense_Mutation p.G271D 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-VS-A9V1-01 6 43752576 43752576 G C VEGFA 3'Flank 0.27 TCGA-VS-A9V1-01 6 88221822 88221822 G C SLC35A1 3'UTR 0.20 TCGA-VS-A9V1-01 7 11091237 11091237 A G PHF14 Splice_Site p.X771_splice 0.27 TCGA-VS-A9V1-01 7 11500301 11500301 G A THSD7A Nonsense_Mutation p.R865* 0.21 TCGA-VS-A9V1-01 7 12414663 12414663 C A VWDE Missense_Mutation p.W405C 0.20 deleterious(0) probably_damaging(0.969) TCGA-VS-A9V1-01 7 130021505 130021505 C - CPA1 Frame_Shift_Del p.I63Sfs*27 0.24 TCGA-VS-A9V1-01 7 134346479 134346479 C G BPGM Missense_Mutation p.L74V 0.43 tolerated(0.06) benign(0.01) TCGA-VS-A9V1-01 7 1474274 1474274 G C MICALL2 Silent p.S891S 0.28 TCGA-VS-A9V1-01 7 150779342 150779342 G C TMUB1 Silent p.L103L 0.23 TCGA-VS-A9V1-01 7 27140774 27140774 C G HOXA2 Missense_Mutation p.E234D 0.27 tolerated(0.38) benign(0.009) TCGA-VS-A9V1-01 7 27213491 27213491 C A HOXA10 Silent p.P145P 0.50 TCGA-VS-A9V1-01 7 66767387 66767387 G A Y_RNA 5'Flank 0.28 TCGA-VS-A9V1-01 7 87505989 87505989 C T DBF4 5'UTR 0.26 TCGA-VS-A9V1-01 8 110980817 110980817 G T KCNV1 Missense_Mutation p.L335I 0.29 deleterious(0) probably_damaging(0.997) TCGA-VS-A9V1-01 8 125564534 125564534 G C MTSS1 3'UTR 0.39 TCGA-VS-A9V1-01 8 144103092 144103092 G C LY6E Missense_Mutation p.Q94H 0.17 deleterious(0.04) probably_damaging(0.924) TCGA-VS-A9V1-01 8 22384933 22384933 C T PPP3CC Silent p.V324V 0.10 TCGA-VS-A9V1-01 8 22548684 22548684 C G EGR3 Missense_Mutation p.E156Q 0.40 tolerated(0.09) probably_damaging(0.962) TCGA-VS-A9V1-01 8 23701236 23701236 G C STC1 3'UTR 0.30 TCGA-VS-A9V1-01 8 33451209 33451209 T G DUSP26 Missense_Mutation p.N93T 0.30 deleterious(0) possibly_damaging(0.75) TCGA-VS-A9V1-01 9 115060164 115060164 G A PTBP3 Silent p.I31I 0.32 TCGA-VS-A9V1-01 9 123307989 123307989 C T CDK5RAP2 Intron 0.60 TCGA-VS-A9V1-01 9 127232866 127232866 C T GPR144 Silent p.Y884Y 0.58 TCGA-VS-A9V1-01 9 131457908 131457908 C G SET 3'UTR 0.71 TCGA-VS-A9V1-01 9 17330676 17330676 C A CNTLN Nonsense_Mutation p.S463* 0.34 TCGA-VS-A9V1-01 9 21409316 21409316 C G IFNA8 Missense_Mutation p.I47M 0.26 deleterious(0.03) possibly_damaging(0.871) TCGA-VS-A9V1-01 9 34977568 34977568 G C KIAA1045 Missense_Mutation p.D346H 0.24 deleterious(0.02) probably_damaging(0.938) TCGA-VS-A9V1-01 9 6553413 6553413 T C GLDC Silent p.P804P 0.28 TCGA-VS-A9V1-01 9 77354856 77354856 G A TRPM6 Missense_Mutation p.S1757F 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-VS-A9V1-01 9 8484335 8484335 C T PTPRD Missense_Mutation p.R1066Q 0.17 tolerated(0.19) benign(0.288) TCGA-VS-A9V1-01 9 94485025 94485025 G A ROR2 3'UTR 0.62 TCGA-VS-A9V1-01 X 112025768 112025768 C A AMOT Missense_Mutation p.R747M 0.52 unknown(0) TCGA-VS-A9V1-01 X 11780267 11780267 C T MSL3 Nonsense_Mutation p.Q162* 0.19 TCGA-VS-A9V1-01 X 14877387 14877387 C G FANCB Missense_Mutation p.V341L 0.26 tolerated(0.65) benign(0.05) TCGA-VS-A9V1-01 X 15552444 15552444 C T BMX Missense_Mutation p.H377Y 0.19 deleterious(0) probably_damaging(1) TCGA-VS-A9V1-01 X 18926039 18926039 C G PHKA2 Missense_Mutation p.K832N 0.37 deleterious(0) probably_damaging(0.974) TCGA-VS-A9V1-01 X 18958147 18958147 C T PHKA2 Missense_Mutation p.R295H 0.37 deleterious(0) probably_damaging(0.998) TCGA-VS-A9V1-01 X 23413886 23413886 G A PTCHD1 3'UTR 0.21 TCGA-VS-A9V1-01 X 38144898 38144898 C T RPGR Silent p.Q1118Q 0.41 TCGA-VS-A9V1-01 X 44035604 44035604 A T EFHC2 Missense_Mutation p.I659N 0.29 deleterious(0) possibly_damaging(0.786) TCGA-VS-A9V1-01 X 55044092 55044092 T A ALAS2 Missense_Mutation p.E277V 0.31 tolerated(1) benign(0.075) TCGA-VS-A9V1-01 X 5809475 5809475 G C NLGN4X 3'UTR 0.40 TCGA-VS-A9V1-01 X 5809534 5809534 G C NLGN4X 3'UTR 0.48 TCGA-VS-A9V1-01 X 64951017 64951017 C T MSN Silent p.I172I 0.46 TCGA-VS-A9V1-01 X 70612782 70612782 C T TAF1 Missense_Mutation p.R1017C 0.45 deleterious(0) probably_damaging(0.987) TCGA-VS-A9V2-01 10 104160036 104160036 C T NFKB2 Missense_Mutation p.T529M 0.38 deleterious(0) probably_damaging(0.996) TCGA-VS-A9V2-01 10 135350679 135350679 C A CYP2E1 Missense_Mutation p.F360L 0.26 tolerated(0.09) benign(0.339) TCGA-VS-A9V2-01 11 31653798 31653798 A G ELP4 Missense_Mutation p.Q258R 0.08 tolerated(0.08) benign(0.033) TCGA-VS-A9V2-01 11 67267409 67267409 C T PITPNM1 Missense_Mutation p.E347K 0.23 deleterious(0) possibly_damaging(0.829) TCGA-VS-A9V2-01 11 7530847 7530847 T C OLFML1 Missense_Mutation p.W213R 0.42 deleterious(0) probably_damaging(0.98) TCGA-VS-A9V2-01 12 120791146 120791146 C A MSI1 Missense_Mutation p.R230L 0.48 deleterious(0) benign(0.003) TCGA-VS-A9V2-01 12 63541204 63541204 T C AVPR1A Missense_Mutation p.T398A 0.17 tolerated(0.95) benign(0.043) TCGA-VS-A9V2-01 12 81101690 81101690 G A MYF6 Silent p.A64A 0.32 TCGA-VS-A9V2-01 13 110835427 110835427 C T COL4A1 Missense_Mutation p.G670R 0.13 probably_damaging(0.999) TCGA-VS-A9V2-01 13 99109503 99109503 C T STK24 Missense_Mutation p.R405Q 0.28 tolerated_low_confidence(0.15) benign(0.004) TCGA-VS-A9V2-01 13 99378477 99378477 C T SLC15A1 Missense_Mutation p.D49N 0.20 tolerated(0.07) benign(0.038) TCGA-VS-A9V2-01 14 104196135 104196135 G C ZFYVE21 Missense_Mutation p.D178H 0.33 tolerated(0.09) benign(0.053) TCGA-VS-A9V2-01 14 22111146 22111146 C T TRAV1-2 5'UTR 0.38 TCGA-VS-A9V2-01 14 42373617 42373617 T A LRFN5 3'UTR 0.18 TCGA-VS-A9V2-01 14 59113073 59113073 G A DACT1 Missense_Mutation p.V578I 0.31 tolerated(1) benign(0.004) TCGA-VS-A9V2-01 14 86088574 86088574 G A FLRT2 Missense_Mutation p.R239H 0.33 deleterious(0) probably_damaging(0.918) TCGA-VS-A9V2-01 15 43102856 43102856 C A TTBK2 Missense_Mutation p.D260Y 0.29 deleterious(0) probably_damaging(0.967) TCGA-VS-A9V2-01 15 74636224 74636224 G T CYP11A1 Silent p.V245V 0.29 TCGA-VS-A9V2-01 15 93486170 93486170 C T CHD2 Silent p.L308L 0.24 TCGA-VS-A9V2-01 16 49430411 49430411 G T C16orf78 Missense_Mutation p.D158Y 0.28 deleterious(0) probably_damaging(0.951) TCGA-VS-A9V2-01 17 42432259 42432259 G C FAM171A2 Silent p.L441L 0.37 TCGA-VS-A9V2-01 17 77984120 77984120 G A TBC1D16 Silent p.A206A 0.32 TCGA-VS-A9V2-01 18 21422403 21422403 C T LAMA3 Silent p.Y1127Y 0.26 TCGA-VS-A9V2-01 18 70417616 70417616 C T NETO1 Missense_Mutation p.A408T 0.22 tolerated(0.09) benign(0.02) TCGA-VS-A9V2-01 19 2116696 2116696 C G AP3D1 Missense_Mutation p.E637Q 0.13 deleterious(0.04) probably_damaging(0.948) TCGA-VS-A9V2-01 19 22379599 22379599 A G ZNF676 5'UTR 0.18 TCGA-VS-A9V2-01 19 47124904 47124917 GCGACAGCCTGGGT - PTGIR Frame_Shift_Del p.T261Pfs*2 0.23 TCGA-VS-A9V2-01 1 201195153 201195153 C A IGFN1 Missense_Mutation p.P3563H 0.44 probably_damaging(1) TCGA-VS-A9V2-01 1 249142429 249142429 G A ZNF672 Missense_Mutation p.R319H 0.22 tolerated(0.58) possibly_damaging(0.703) TCGA-VS-A9V2-01 1 43395332 43395332 C T SLC2A1 Missense_Mutation p.A267T 0.27 tolerated(0.59) benign(0.002) TCGA-VS-A9V2-01 1 43783644 43783644 T A TIE1 Missense_Mutation p.F941L 0.25 deleterious(0) probably_damaging(0.978) TCGA-VS-A9V2-01 22 41736004 41736004 C G ZC3H7B Missense_Mutation p.S334C 0.27 deleterious(0.02) probably_damaging(0.986) TCGA-VS-A9V2-01 2 10815923 10815923 C G NOL10 Missense_Mutation p.E96Q 0.33 deleterious(0.01) possibly_damaging(0.483) TCGA-VS-A9V2-01 2 167300181 167300181 G A SCN7A Silent p.F544F 0.37 TCGA-VS-A9V2-01 2 21236144 21236144 G C APOB Missense_Mutation p.N1368K 0.06 probably_damaging(0.994) TCGA-VS-A9V2-01 2 33413865 33413865 G A LTBP1 Missense_Mutation p.V550M 0.21 deleterious(0) possibly_damaging(0.878) TCGA-VS-A9V2-01 2 70438851 70438851 G A TIA1 3'UTR 0.08 TCGA-VS-A9V2-01 2 9545025 9545025 A T ITGB1BP1 3'UTR 0.07 TCGA-VS-A9V2-01 3 121707178 121707178 G A ILDR1 3'UTR 0.42 TCGA-VS-A9V2-01 3 184290570 184290571 - GTGAA EPHB3 Frame_Shift_Ins p.V157* 0.30 TCGA-VS-A9V2-01 3 42633088 42633088 C T SS18L2 Silent p.C47C 0.52 TCGA-VS-A9V2-01 3 43096935 43096935 C T FAM198A Silent p.S475S 0.10 TCGA-VS-A9V2-01 3 93646181 93646181 G T PROS1 Silent p.T49T 0.20 TCGA-VS-A9V2-01 4 118004971 118004971 T A TRAM1L1 3'UTR 0.43 TCGA-VS-A9V2-01 4 2306473 2306473 C T ZFYVE28 Missense_Mutation p.A532T 0.46 tolerated_low_confidence(0.74) benign(0.001) TCGA-VS-A9V2-01 4 77028911 77028911 T A ART3 Intron 0.43 TCGA-VS-A9V2-01 4 7761285 7761285 G C AFAP1 3'UTR 0.17 TCGA-VS-A9V2-01 5 10973707 10973707 C T CTNND2 Missense_Mutation p.R1179H 0.38 deleterious_low_confidence(0.05) possibly_damaging(0.715) TCGA-VS-A9V2-01 5 178459947 178459947 A T ZNF879 Missense_Mutation p.Q333L 0.22 tolerated(0.08) probably_damaging(0.962) TCGA-VS-A9V2-01 5 88057033 88057033 A G MEF2C Intron 0.25 TCGA-VS-A9V2-01 6 26216781 26216781 T C HIST1H2BG Missense_Mutation p.K31E 0.24 deleterious_low_confidence(0) unknown(0) TCGA-VS-A9V2-01 6 41704572 41704572 C T PGC 3'UTR 0.08 TCGA-VS-A9V2-01 7 100680165 100680165 C A MUC17 Missense_Mutation p.S1823Y 0.26 possibly_damaging(0.608) TCGA-VS-A9V2-01 7 150768212 150768212 C T SLC4A2 Silent p.A601A 0.12 TCGA-VS-A9V2-01 7 151877954 151877954 C T KMT2C Missense_Mutation p.E2331K 0.32 possibly_damaging(0.735) TCGA-VS-A9V2-01 7 20421382 20421382 A G ITGB8 Silent p.R278R 0.30 TCGA-VS-A9V2-01 7 21468936 21468936 G C SP4 Silent p.L51L 0.36 TCGA-VS-A9V2-01 7 29440378 29440388 GAGCAGGTCTA - CHN2 Frame_Shift_Del p.S171Kfs*2 0.15 TCGA-VS-A9V2-01 7 51287513 51287513 G A COBL Missense_Mutation p.A57V 0.13 deleterious(0.03) possibly_damaging(0.523) TCGA-VS-A9V2-01 8 131792712 131792712 C T ADCY8 Missense_Mutation p.R1227Q 0.18 deleterious_low_confidence(0.02) benign(0) TCGA-VS-A9V2-01 9 131971399 131971399 G A RP11-247A12.2 RNA 0.36 TCGA-VS-A9V2-01 9 86583087 86583088 - AA HNRNPK 3'UTR 0.26 TCGA-VS-A9V2-01 9 90500878 90500878 G A SPATA31E1 Silent p.Q492Q 0.28 TCGA-VS-A9V2-01 X 24861709 24861709 G T POLA1 Missense_Mutation p.C1315F 0.33 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V2-01 X 5811421 5811421 C T NLGN4X Missense_Mutation p.A630T 0.24 tolerated(0.63) benign(0) TCGA-VS-A9V2-01 X 75651566 75651566 C G MAGEE1 3'UTR 0.25 TCGA-VS-A9V2-01 X 90690709 90690709 C A PABPC5 Silent p.R45R 0.38 TCGA-VS-A9V3-01 10 108536303 108536303 G C SORCS1 Missense_Mutation p.Q292E 0.48 tolerated(0.42) benign(0.249) TCGA-VS-A9V3-01 10 123276958 123276958 G A FGFR2 Intron 0.57 TCGA-VS-A9V3-01 10 88260257 88260257 G A WAPAL Missense_Mutation p.S248L 0.43 tolerated_low_confidence(0.32) benign(0.013) TCGA-VS-A9V3-01 10 97117436 97117436 G A SORBS1 Nonsense_Mutation p.Q694* 0.14 TCGA-VS-A9V3-01 11 110561729 110561729 G C ARHGAP20 Intron 0.35 TCGA-VS-A9V3-01 11 117391942 117391942 G T DSCAML1 Silent p.L432L 0.28 TCGA-VS-A9V3-01 11 122932002 122932002 G A HSPA8 Missense_Mutation p.L11F 0.24 deleterious_low_confidence(0.05) benign(0.239) TCGA-VS-A9V3-01 11 130103205 130103205 C T ZBTB44 3'UTR 0.18 TCGA-VS-A9V3-01 11 32955772 32955772 G A QSER1 Missense_Mutation p.A861T 0.21 deleterious(0) probably_damaging(0.998) TCGA-VS-A9V3-01 11 400018 400018 G A PKP3 Missense_Mutation p.R442K 0.28 tolerated(0.2) benign(0.289) TCGA-VS-A9V3-01 11 46896633 46896633 C A LRP4 Missense_Mutation p.R1316I 0.36 deleterious(0.02) benign(0.252) TCGA-VS-A9V3-01 11 499912 499912 G A RNH1 Silent p.L120L 0.37 TCGA-VS-A9V3-01 11 61643363 61643363 C T FADS3 Missense_Mutation p.E416K 0.30 tolerated(0.38) possibly_damaging(0.574) TCGA-VS-A9V3-01 11 65427643 65427643 C T RELA Missense_Mutation p.E127K 0.35 tolerated(0.69) possibly_damaging(0.453) TCGA-VS-A9V3-01 11 6631392 6631392 G T ILK Missense_Mutation p.K364N 0.36 deleterious(0.01) benign(0.169) TCGA-VS-A9V3-01 11 68579947 68579947 G A CPT1A Missense_Mutation p.S80L 0.29 deleterious(0.01) benign(0.273) TCGA-VS-A9V3-01 11 71726496 71726496 G A NUMA1 Nonsense_Mutation p.Q685* 0.27 TCGA-VS-A9V3-01 11 72425198 72425198 G A ARAP1 Silent p.F226F 0.28 TCGA-VS-A9V3-01 11 802328 802328 C T PIDD Missense_Mutation p.G348E 0.32 deleterious(0.02) probably_damaging(0.951) TCGA-VS-A9V3-01 11 8132371 8132371 A G RIC3 Silent p.P328P 0.44 TCGA-VS-A9V3-01 11 82444587 82444587 G T FAM181B Missense_Mutation p.A62D 0.20 deleterious(0.01) probably_damaging(0.958) TCGA-VS-A9V3-01 11 88780879 88780879 C G GRM5 Missense_Mutation p.E54D 0.46 tolerated(0.08) possibly_damaging(0.803) TCGA-VS-A9V3-01 11 94328582 94328582 A G PIWIL4 Missense_Mutation p.N420D 0.21 tolerated(1) benign(0) TCGA-VS-A9V3-01 11 94865500 94865500 C T ENDOD1 3'UTR 0.36 TCGA-VS-A9V3-01 12 101514401 101514401 G C ANO4 Missense_Mutation p.E857Q 0.40 deleterious(0) possibly_damaging(0.831) TCGA-VS-A9V3-01 12 106459518 106459518 C T NUAK1 3'UTR 0.40 TCGA-VS-A9V3-01 12 111655739 111655739 G A CUX2 Missense_Mutation p.E74K 0.31 deleterious(0.03) benign(0.306) TCGA-VS-A9V3-01 12 112123498 112123498 G A BRAP Intron 0.42 TCGA-VS-A9V3-01 12 123078922 123078922 G C KNTC1 Missense_Mutation p.E1449Q 0.30 tolerated(0.35) possibly_damaging(0.815) TCGA-VS-A9V3-01 12 123920892 123920892 C G RILPL2 Missense_Mutation p.E26Q 0.44 deleterious(0.03) unknown(0) TCGA-VS-A9V3-01 12 124104663 124104663 C T DDX55 Silent p.I593I 0.36 TCGA-VS-A9V3-01 12 2022230 2022230 C T CACNA2D4 Missense_Mutation p.D129N 0.31 tolerated(0.15) benign(0.006) TCGA-VS-A9V3-01 12 29670385 29670385 G C TMTC1 Missense_Mutation p.S715C 0.58 deleterious(0.05) possibly_damaging(0.781) TCGA-VS-A9V3-01 12 30906486 30906486 G T CAPRIN2 Nonsense_Mutation p.S71* 0.35 TCGA-VS-A9V3-01 12 40153654 40153654 A - SLC2A13 3'UTR 0.43 TCGA-VS-A9V3-01 12 51584073 51584073 G A POU6F1 Missense_Mutation p.T288M 0.33 deleterious(0.04) probably_damaging(0.954) TCGA-VS-A9V3-01 12 52881459 52881459 G A KRT6A 3'UTR 0.67 TCGA-VS-A9V3-01 12 53010152 53010152 C T KRT73 Missense_Mutation p.E154K 0.23 deleterious(0) probably_damaging(0.984) TCGA-VS-A9V3-01 12 58130874 58130874 G A AGAP2 Missense_Mutation p.R386C 0.37 deleterious(0.02) possibly_damaging(0.556) TCGA-VS-A9V3-01 12 58131398 58131398 G T AGAP2 Nonsense_Mutation p.S211* 0.54 TCGA-VS-A9V3-01 12 6777044 6777044 G C ZNF384 Missense_Mutation p.P524A 0.16 tolerated(0.09) possibly_damaging(0.539) TCGA-VS-A9V3-01 12 79988203 79988203 C T PAWR Missense_Mutation p.R281K 0.41 tolerated(0.66) benign(0.017) TCGA-VS-A9V3-01 13 113818856 113818856 G A PROZ Missense_Mutation p.D157N 0.25 deleterious(0.03) possibly_damaging(0.86) TCGA-VS-A9V3-01 13 20235973 20235973 G C MPHOSPH8 Missense_Mutation p.E643Q 0.33 tolerated(0.06) probably_damaging(1) TCGA-VS-A9V3-01 13 29933473 29933473 G T MTUS2 Nonsense_Mutation p.E1004* 0.34 TCGA-VS-A9V3-01 13 29933550 29933550 G A MTUS2 Silent p.L1029L 0.22 TCGA-VS-A9V3-01 13 48951053 48951053 G T RB1 Splice_Site p.X406_splice 0.39 TCGA-VS-A9V3-01 13 49030473 49030474 TT - RB1 Frame_Shift_Del p.F650Lfs*2 0.31 TCGA-VS-A9V3-01 13 50204595 50204595 G A ARL11 Silent p.V4V 0.18 TCGA-VS-A9V3-01 14 45645732 45645732 C G FANCM Missense_Mutation p.L1259V 0.31 tolerated(0.28) benign(0.017) TCGA-VS-A9V3-01 14 50732076 50732076 C T L2HGDH Missense_Mutation p.R399K 0.34 tolerated(0.11) possibly_damaging(0.557) TCGA-VS-A9V3-01 14 62214553 62214553 C T HIF1A 3'Flank 0.41 TCGA-VS-A9V3-01 14 74769628 74769628 G A ABCD4 5'UTR 0.37 TCGA-VS-A9V3-01 14 77580482 77580482 C T CIPC Missense_Mutation p.R341C 0.31 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V3-01 14 86091141 86091141 G A FLRT2 3'UTR 0.38 TCGA-VS-A9V3-01 14 88651684 88651684 G A KCNK10 3'UTR 0.20 TCGA-VS-A9V3-01 14 95910760 95910760 G A SYNE3 Intron 0.23 TCGA-VS-A9V3-01 15 32720476 32720476 T C U8 5'Flank 0.18 TCGA-VS-A9V3-01 15 40862133 40862133 C T RPUSD2 Silent p.I199I 0.40 TCGA-VS-A9V3-01 15 44028226 44028226 C T RNU6-354P 5'Flank 0.48 TCGA-VS-A9V3-01 15 44861614 44861614 C A SPG11 Missense_Mutation p.M2189I 0.42 deleterious(0.01) benign(0.216) TCGA-VS-A9V3-01 15 57384017 57384017 C T TCF12 Missense_Mutation p.H85Y 0.11 tolerated(0.05) probably_damaging(0.998) TCGA-VS-A9V3-01 15 65868702 65868702 G T PTPLAD1 Missense_Mutation p.K358N 0.36 deleterious(0) unknown(0) TCGA-VS-A9V3-01 15 74932942 74932942 G - EDC3 Frame_Shift_Del p.P280Qfs*20 0.35 TCGA-VS-A9V3-01 15 90767086 90767086 G A SEMA4B Missense_Mutation p.E354K 0.41 tolerated(0.87) benign(0.043) TCGA-VS-A9V3-01 15 90768226 90768226 G A SEMA4B Silent p.R407R 0.27 TCGA-VS-A9V3-01 16 2069699 2069699 C T NPW 5'UTR 0.07 TCGA-VS-A9V3-01 16 27549200 27549200 G A GTF3C1 Silent p.N219N 0.33 TCGA-VS-A9V3-01 16 3141583 3141583 C T ZSCAN10 Missense_Mutation p.E194K 0.29 tolerated(0.07) benign(0.152) TCGA-VS-A9V3-01 16 5140234 5140234 C T FAM86A Missense_Mutation p.R198Q 0.37 tolerated(0.34) benign(0.017) TCGA-VS-A9V3-01 16 56385307 56385307 C T GNAO1 3'Flank 0.31 TCGA-VS-A9V3-01 16 57465080 57465080 C A CIAPIN1 Missense_Mutation p.R243S 0.28 deleterious(0) possibly_damaging(0.515) TCGA-VS-A9V3-01 16 618679 618679 C A NHLRC4 3'UTR 0.49 TCGA-VS-A9V3-01 16 67681972 67681972 G A RLTPR Silent p.L363L 0.32 TCGA-VS-A9V3-01 16 67681999 67681999 G A RLTPR Silent p.L372L 0.33 TCGA-VS-A9V3-01 16 69377501 69377501 G A TMED6 Nonsense_Mutation p.R178* 0.26 TCGA-VS-A9V3-01 16 69971055 69971055 G A WWP2 Missense_Mutation p.E718K 0.43 tolerated(0.14) benign(0.124) TCGA-VS-A9V3-01 16 69973774 69973774 G T WWP2 Missense_Mutation p.K848N 0.62 deleterious(0) possibly_damaging(0.787) TCGA-VS-A9V3-01 16 71264540 71264540 G A HYDIN 5'UTR 0.31 TCGA-VS-A9V3-01 16 75563457 75563457 C T CHST5 Missense_Mutation p.E276K 0.33 tolerated(0.63) benign(0.269) TCGA-VS-A9V3-01 16 81151032 81151032 C T PKD1L2 RNA 0.34 TCGA-VS-A9V3-01 16 83999594 83999594 G C OSGIN1 Missense_Mutation p.E472D 0.31 tolerated(0.25) benign(0.421) TCGA-VS-A9V3-01 16 89628800 89628800 G C RPL13 Splice_Site p.X159_splice 0.28 TCGA-VS-A9V3-01 17 19091383 19091383 G A SNORD3A RNA 0.08 TCGA-VS-A9V3-01 17 28747937 28747937 C G CPD Missense_Mutation p.P358R 0.39 tolerated(0.24) probably_damaging(0.936) TCGA-VS-A9V3-01 17 36829970 36829974 CCCTT - C17orf96 Frame_Shift_Del p.K259Lfs*86 0.50 TCGA-VS-A9V3-01 17 39784359 39784359 C T KRT17 5'Flank 0.38 TCGA-VS-A9V3-01 17 41957236 41957236 C T MPP2 Missense_Mutation p.E423K 0.33 tolerated(0.09) possibly_damaging(0.864) TCGA-VS-A9V3-01 17 45822604 45822604 G A TBX21 Missense_Mutation p.E494K 0.09 tolerated(0.12) probably_damaging(0.981) TCGA-VS-A9V3-01 17 48269242 48269242 C G COL1A1 Missense_Mutation p.E678D 0.22 probably_damaging(0.924) TCGA-VS-A9V3-01 17 59761021 59761021 G C BRIP1 Missense_Mutation p.S1129C 0.10 deleterious_low_confidence(0.01) benign(0.258) TCGA-VS-A9V3-01 17 61515303 61515303 G C CYB561 Intron 0.25 TCGA-VS-A9V3-01 17 61515527 61515527 G A CYB561 Intron 0.33 TCGA-VS-A9V3-01 17 61515531 61515531 G A CYB561 Intron 0.35 TCGA-VS-A9V3-01 17 74097777 74097777 C T EXOC7 Silent p.E98E 0.26 TCGA-VS-A9V3-01 17 74099482 74099482 C T EXOC7 Missense_Mutation p.R29Q 0.33 tolerated(0.08) benign(0.029) TCGA-VS-A9V3-01 17 75398439 75398439 C T SEPT9 Silent p.I125I 0.42 TCGA-VS-A9V3-01 17 76210408 76210408 C T BIRC5 Missense_Mutation p.P4L 0.25 tolerated(0.11) benign(0.009) TCGA-VS-A9V3-01 17 77231879 77231879 C A RBFOX3 5'UTR 0.33 TCGA-VS-A9V3-01 17 79206224 79206224 C G ENTHD2 Intron 0.35 TCGA-VS-A9V3-01 17 79206307 79206307 C T ENTHD2 Intron 0.38 TCGA-VS-A9V3-01 17 79207394 79207394 G C ENTHD2 Intron 0.36 TCGA-VS-A9V3-01 17 900577 900577 G T TIMM22 Silent p.A65A 0.48 TCGA-VS-A9V3-01 17 9143161 9143161 C T NTN1 Missense_Mutation p.S564F 0.31 deleterious(0.01) probably_damaging(0.914) TCGA-VS-A9V3-01 17 9729515 9729515 C T GLP2R Silent p.L45L 0.33 TCGA-VS-A9V3-01 18 15316699 15316699 C T RNU6-721P 3'Flank 0.25 TCGA-VS-A9V3-01 18 19283682 19283682 C T ABHD3 Silent p.E63E 0.41 TCGA-VS-A9V3-01 18 40849656 40849656 C T SYT4 3'UTR 0.43 TCGA-VS-A9V3-01 18 48256229 48256229 G A MAPK4 3'UTR 0.18 TCGA-VS-A9V3-01 18 5145690 5145690 C T C18orf42 Silent p.Q27Q 0.38 TCGA-VS-A9V3-01 18 61650848 61650848 G A SERPINB8 Missense_Mutation p.D154N 0.45 tolerated(0.57) benign(0) TCGA-VS-A9V3-01 18 72343447 72343447 G A ZNF407 Missense_Mutation p.V158I 0.34 tolerated(0.2) benign(0.004) TCGA-VS-A9V3-01 19 15839403 15839403 C A OR10H2 Missense_Mutation p.L184M 0.37 deleterious(0.04) possibly_damaging(0.702) TCGA-VS-A9V3-01 19 20002572 20002572 C G ZNF253 Missense_Mutation p.F172L 0.43 tolerated(0.1) possibly_damaging(0.472) TCGA-VS-A9V3-01 19 2226591 2226591 C T DOT1L Silent p.R1357R 0.65 TCGA-VS-A9V3-01 19 33298478 33298478 G A TDRD12 Missense_Mutation p.R859Q 0.41 deleterious(0) probably_damaging(0.968) TCGA-VS-A9V3-01 19 36243848 36243848 G T LIN37 Missense_Mutation p.K75N 0.39 deleterious(0) probably_damaging(0.994) TCGA-VS-A9V3-01 19 36243895 36243895 G A LIN37 Missense_Mutation p.R91Q 0.41 tolerated(0.1) benign(0.06) TCGA-VS-A9V3-01 19 38905740 38905740 G A RASGRP4 Silent p.L326L 0.24 TCGA-VS-A9V3-01 19 40581954 40581954 C T ZNF780A Missense_Mutation p.G133E 0.07 tolerated(0.95) benign(0.009) TCGA-VS-A9V3-01 19 45594521 45594521 C G GEMIN7 3'UTR 0.38 TCGA-VS-A9V3-01 19 49303312 49303312 C T BCAT2 Missense_Mutation p.E153K 0.34 tolerated(0.59) benign(0.01) TCGA-VS-A9V3-01 19 50813098 50813098 C G MYH14 3'UTR 0.40 TCGA-VS-A9V3-01 19 51981803 51981803 G A CEACAM18 Silent p.Q30Q 0.43 TCGA-VS-A9V3-01 19 53762354 53762354 G A VN1R2 Silent p.K242K 0.39 TCGA-VS-A9V3-01 19 57910730 57910730 C G ZNF548 Missense_Mutation p.H371D 0.33 deleterious(0) possibly_damaging(0.877) TCGA-VS-A9V3-01 19 6744851 6744851 C A TRIP10 Missense_Mutation p.A277D 0.72 tolerated(0.17) benign(0.001) TCGA-VS-A9V3-01 1 108918828 108918828 G A NBPF6 Intron 0.21 TCGA-VS-A9V3-01 1 1154146 1154146 C T SDF4 Intron 0.68 TCGA-VS-A9V3-01 1 151263206 151263206 C T ZNF687 Missense_Mutation p.R1079C 0.54 deleterious(0.03) probably_damaging(0.991) TCGA-VS-A9V3-01 1 152488228 152488228 G A CRCT1 3'UTR 0.58 TCGA-VS-A9V3-01 1 158532712 158532712 A G OR6P1 Missense_Mutation p.I228T 0.50 deleterious(0.01) possibly_damaging(0.653) TCGA-VS-A9V3-01 1 170706824 170706824 G A PRRX1 3'UTR 0.43 TCGA-VS-A9V3-01 1 184020965 184020965 G A TSEN15 Missense_Mutation p.D26N 0.39 tolerated_low_confidence(0.51) benign(0.031) TCGA-VS-A9V3-01 1 19500086 19500086 C G UBR4 Missense_Mutation p.L1004F 0.66 possibly_damaging(0.897) TCGA-VS-A9V3-01 1 205057105 205057105 G C RBBP5 3'UTR 0.24 TCGA-VS-A9V3-01 1 205057893 205057893 G C RBBP5 3'UTR 0.15 TCGA-VS-A9V3-01 1 205073004 205073004 G A RBBP5 Missense_Mutation p.T168M 0.20 deleterious(0.01) benign(0.016) TCGA-VS-A9V3-01 1 205627958 205627958 A T SLC45A3 3'UTR 0.19 TCGA-VS-A9V3-01 1 228003417 228003417 C T PRSS38 5'UTR 0.22 TCGA-VS-A9V3-01 1 230910361 230910361 G T CAPN9 Missense_Mutation p.D313Y 0.23 deleterious(0) probably_damaging(0.995) TCGA-VS-A9V3-01 1 243652436 243652436 G A SDCCAG8 Silent p.R702R 0.70 TCGA-VS-A9V3-01 1 244527993 244527993 C T C1orf100 5'UTR 0.22 TCGA-VS-A9V3-01 1 247263816 247263816 C G ZNF669 Missense_Mutation p.E419Q 0.05 deleterious(0.04) probably_damaging(0.946) TCGA-VS-A9V3-01 1 36235464 36235464 C T CLSPN Missense_Mutation p.G3D 0.30 deleterious_low_confidence(0) benign(0.258) TCGA-VS-A9V3-01 1 40235557 40235557 C T OXCT2 Silent p.L457L 0.21 TCGA-VS-A9V3-01 1 51873884 51873884 C G EPS15 Missense_Mutation p.E466Q 0.28 tolerated(1) benign(0.075) TCGA-VS-A9V3-01 1 51875221 51875221 C G EPS15 Missense_Mutation p.E421Q 0.37 tolerated(0.2) benign(0.169) TCGA-VS-A9V3-01 1 53236789 53236789 C T ZYG11B Silent p.F98F 0.41 TCGA-VS-A9V3-01 1 53676192 53676192 C T CPT2 Silent p.P282P 0.35 TCGA-VS-A9V3-01 1 59249150 59249150 G C JUN 5'UTR 0.34 TCGA-VS-A9V3-01 1 60359063 60359063 C G CYP2J2 3'UTR 0.44 TCGA-VS-A9V3-01 1 66067117 66067117 C G LEPR Missense_Mutation p.S346C 0.40 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V3-01 1 9129572 9129572 C T SLC2A5 Missense_Mutation p.M8I 0.29 tolerated(0.11) benign(0.001) TCGA-VS-A9V3-01 20 18470423 18470423 C T RBBP9 Silent p.L182L 0.30 TCGA-VS-A9V3-01 20 34327092 34327092 G C RBM39 Intron 0.33 TCGA-VS-A9V3-01 20 39831294 39831294 C G ZHX3 Missense_Mutation p.E755Q 0.17 tolerated(0.57) benign(0.004) TCGA-VS-A9V3-01 20 42788616 42788616 C T JPH2 Missense_Mutation p.E271K 0.23 tolerated(0.13) possibly_damaging(0.88) TCGA-VS-A9V3-01 20 44048017 44048017 C T PIGT Silent p.L192L 0.21 TCGA-VS-A9V3-01 20 49247274 49247274 C T FAM65C Splice_Site p.X37_splice 0.59 TCGA-VS-A9V3-01 21 31691979 31691979 C T KRTAP26-1 Silent p.L125L 0.41 TCGA-VS-A9V3-01 21 34166356 34166356 C T C21orf62 Missense_Mutation p.R126H 0.19 tolerated(0.08) benign(0.128) TCGA-VS-A9V3-01 21 38569991 38569991 G C TTC3 Missense_Mutation p.K1900N 0.04 deleterious(0.02) possibly_damaging(0.616) TCGA-VS-A9V3-01 21 43708109 43708109 G A ABCG1 Missense_Mutation p.E362K 0.50 tolerated(0.51) benign(0.001) TCGA-VS-A9V3-01 22 18844689 18844689 G A BCRP7 Intron 0.14 TCGA-VS-A9V3-01 22 22273924 22273924 T A PPM1F 3'UTR 0.38 TCGA-VS-A9V3-01 22 23010768 23010768 C T IGLV3-27 5'UTR 0.36 TCGA-VS-A9V3-01 22 23804691 23804691 G A AP000345.1 RNA 0.50 TCGA-VS-A9V3-01 22 24085918 24085918 G A ZNF70 3'UTR 0.35 TCGA-VS-A9V3-01 22 29663438 29663438 G T RHBDD3 5'UTR 0.43 TCGA-VS-A9V3-01 22 41521980 41521980 C G EP300 Nonsense_Mutation p.S281* 0.31 TCGA-VS-A9V3-01 22 41795099 41795099 C T TEF 3'UTR 0.11 TCGA-VS-A9V3-01 2 109522798 109522798 G A EDAR Silent p.L330L 0.47 TCGA-VS-A9V3-01 2 132285720 132285720 C A CCDC74A Missense_Mutation p.F59L 0.33 deleterious(0) probably_damaging(0.998) TCGA-VS-A9V3-01 2 132287441 132287441 A G CCDC74A Intron 0.28 TCGA-VS-A9V3-01 2 1499825 1499825 C G TPO Missense_Mutation p.L691V 0.68 deleterious(0) probably_damaging(0.973) TCGA-VS-A9V3-01 2 175437113 175437113 G - WIPF1 Frame_Shift_Del p.S142Hfs*99 0.27 TCGA-VS-A9V3-01 2 202410284 202410284 C G ALS2CR11 Missense_Mutation p.E382Q 0.10 tolerated(0.13) benign(0.004) TCGA-VS-A9V3-01 2 203156133 203156133 C G NOP58 Intron 0.41 TCGA-VS-A9V3-01 2 220101716 220101716 G A GLB1L 3'UTR 0.45 TCGA-VS-A9V3-01 2 220101887 220101887 G A GLB1L Silent p.L624L 0.44 TCGA-VS-A9V3-01 2 220102551 220102551 G T GLB1L Missense_Mutation p.F490L 0.36 tolerated(0.08) benign(0.014) TCGA-VS-A9V3-01 2 25377223 25377223 G C EFR3B 3'UTR 0.38 TCGA-VS-A9V3-01 2 29445424 29445424 C T ALK Missense_Mutation p.G1137R 0.26 deleterious(0.01) probably_damaging(0.965) TCGA-VS-A9V3-01 2 46313496 46313496 C G PRKCE Missense_Mutation p.I529M 0.19 deleterious(0) probably_damaging(0.988) TCGA-VS-A9V3-01 2 48026014 48026014 C T MSH6 Nonsense_Mutation p.R298* 0.26 TCGA-VS-A9V3-01 2 53992541 53992541 C T ASB3 Missense_Mutation p.E92K 0.23 tolerated(0.15) benign(0.1) TCGA-VS-A9V3-01 2 64751736 64751736 G A AFTPH 5'UTR 0.32 TCGA-VS-A9V3-01 2 70053241 70053241 C G ANXA4 3'UTR 0.06 TCGA-VS-A9V3-01 2 70502214 70502214 C T PCYOX1 Silent p.A206A 0.31 TCGA-VS-A9V3-01 2 72358197 72358197 G A CYP26B1 3'UTR 0.27 TCGA-VS-A9V3-01 2 74782301 74782301 C T DOK1 Silent p.A27A 0.21 TCGA-VS-A9V3-01 3 101283871 101283871 C T TRMT10C Silent p.I82I 0.57 TCGA-VS-A9V3-01 3 11599306 11599306 G C VGLL4 3'Flank 0.51 TCGA-VS-A9V3-01 3 130174469 130174469 A - COL6A5 Frame_Shift_Del p.D2252Ifs*45 0.26 TCGA-VS-A9V3-01 3 14551394 14551394 G A GRIP2 RNA 0.36 TCGA-VS-A9V3-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.44 deleterious(0.02) probably_damaging(0.959) TCGA-VS-A9V3-01 3 187088724 187088724 G A RTP4 Missense_Mutation p.E102K 0.41 deleterious(0) probably_damaging(0.984) TCGA-VS-A9V3-01 3 3133983 3133983 G C IL5RA Missense_Mutation p.Q307E 0.46 tolerated(0.06) benign(0.077) TCGA-VS-A9V3-01 3 31674463 31674463 C T STT3B Missense_Mutation p.R742C 0.43 deleterious(0) probably_damaging(1) TCGA-VS-A9V3-01 3 33600855 33600855 G A CLASP2 Nonsense_Mutation p.Q993* 0.11 TCGA-VS-A9V3-01 3 35723259 35723259 G A ARPP21 Missense_Mutation p.D6N 0.43 tolerated_low_confidence(0.11) benign(0.011) TCGA-VS-A9V3-01 4 101109251 101109251 C T DDIT4L Silent p.Q55Q 0.41 TCGA-VS-A9V3-01 4 121702320 121702320 G A PRDM5 Missense_Mutation p.S474L 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-VS-A9V3-01 4 140263985 140263985 G A NAA15 Silent p.T136T 0.18 TCGA-VS-A9V3-01 4 141074052 141074052 C T MAML3 Missense_Mutation p.A144T 0.49 benign(0) TCGA-VS-A9V3-01 4 164449864 164449864 G C MARCH1 3'UTR 0.26 TCGA-VS-A9V3-01 4 25678361 25678361 C T SLC34A2 Missense_Mutation p.T688M 0.22 deleterious_low_confidence(0) benign(0.01) TCGA-VS-A9V3-01 4 3237461 3237461 G T HTT Missense_Mutation p.R2914L 0.18 probably_damaging(0.999) TCGA-VS-A9V3-01 4 377041 377041 G A ZNF141 3'UTR 0.53 TCGA-VS-A9V3-01 4 55133593 55133593 C G PDGFRA Silent p.V299V 0.06 TCGA-VS-A9V3-01 4 95197554 95197554 G A SMARCAD1 Missense_Mutation p.A625T 0.45 deleterious(0.01) benign(0.207) TCGA-VS-A9V3-01 5 102442583 102442583 C T GIN1 Missense_Mutation p.R57K 0.06 tolerated(0.73) benign(0.001) TCGA-VS-A9V3-01 5 138737729 138737729 C A SPATA24 Missense_Mutation p.E63D 0.37 deleterious(0) probably_damaging(0.998) TCGA-VS-A9V3-01 5 140166605 140166605 C T PCDHA1 Nonsense_Mutation p.Q244* 0.30 TCGA-VS-A9V3-01 5 141381521 141381521 C T GNPDA1 3'UTR 0.63 TCGA-VS-A9V3-01 5 142659356 142659356 C G NR3C1 3'Flank 0.29 TCGA-VS-A9V3-01 5 142659456 142659456 C T NR3C1 3'Flank 0.15 TCGA-VS-A9V3-01 5 143853920 143853920 C T KCTD16 3'UTR 0.38 TCGA-VS-A9V3-01 5 14687649 14687649 G T FAM105B Missense_Mutation p.S163I 0.33 tolerated(0.35) benign(0.014) TCGA-VS-A9V3-01 5 149449441 149449441 G C CSF1R Missense_Mutation p.S502C 0.42 deleterious(0.03) possibly_damaging(0.572) TCGA-VS-A9V3-01 5 162910078 162910078 G C HMMR Missense_Mutation p.E529Q 0.31 tolerated(0.32) benign(0.131) TCGA-VS-A9V3-01 5 175957109 175957109 G A RNF44 Silent p.Y300Y 0.27 TCGA-VS-A9V3-01 5 35670235 35670235 C T SPEF2 Missense_Mutation p.S477F 0.40 deleterious(0.01) possibly_damaging(0.726) TCGA-VS-A9V3-01 5 40853321 40853321 C G CARD6 Silent p.L629L 0.39 TCGA-VS-A9V3-01 6 100368764 100368764 T C MCHR2 3'UTR 0.53 TCGA-VS-A9V3-01 6 10955424 10955424 C A SYCP2L Nonsense_Mutation p.S677* 0.62 TCGA-VS-A9V3-01 6 150001519 150001519 A - LATS1 Frame_Shift_Del p.R697Gfs*10 0.41 TCGA-VS-A9V3-01 6 32138628 32138628 G A AGPAT1 Intron 0.62 TCGA-VS-A9V3-01 6 36040681 36040681 C G MAPK14 Missense_Mutation p.L113V 0.68 deleterious(0.03) benign(0.404) TCGA-VS-A9V3-01 6 41121769 41121769 G C TREML1 Missense_Mutation p.L35V 0.58 tolerated(0.67) benign(0.026) TCGA-VS-A9V3-01 7 100887301 100887301 G A FIS1 Silent p.I55I 0.45 TCGA-VS-A9V3-01 7 102952131 102952131 G A PMPCB Missense_Mutation p.R399Q 0.37 deleterious(0.02) possibly_damaging(0.841) TCGA-VS-A9V3-01 7 114302209 114302209 A G FOXP2 Silent p.E604E 0.33 TCGA-VS-A9V3-01 7 120595855 120595855 G A ING3 Intron 0.50 TCGA-VS-A9V3-01 7 121651007 121651007 C T PTPRZ1 Missense_Mutation p.S636L 0.42 deleterious_low_confidence(0.03) benign(0.282) TCGA-VS-A9V3-01 7 122342158 122342158 C G RNF148 Missense_Mutation p.R216T 0.21 deleterious(0.01) benign(0.026) TCGA-VS-A9V3-01 7 142494575 142494580 GCTCGG - TRBJ2-3 Missense_Mutation 0.29 TCGA-VS-A9V3-01 7 143807011 143807011 G A OR2A2 Silent p.L112L 0.42 TCGA-VS-A9V3-01 7 143807098 143807098 G A OR2A2 Silent p.T141T 0.48 TCGA-VS-A9V3-01 7 151877972 151877972 G A KMT2C Nonsense_Mutation p.Q2325* 0.29 TCGA-VS-A9V3-01 7 34971110 34971110 G A DPY19L1 3'UTR 0.52 TCGA-VS-A9V3-01 7 5161523 5161523 G A ZNF890P RNA 0.50 TCGA-VS-A9V3-01 7 5886731 5886731 C T ZNF815P RNA 0.35 TCGA-VS-A9V3-01 7 64151650 64151650 G A ZNF107 5'UTR 0.38 TCGA-VS-A9V3-01 7 66406946 66406946 A G TMEM248 Missense_Mutation p.I32V 0.32 tolerated(0.15) possibly_damaging(0.81) TCGA-VS-A9V3-01 8 113236891 113236891 G A CSMD3 3'UTR 0.37 TCGA-VS-A9V3-01 8 113308075 113308075 G C CSMD3 Silent p.L2867L 0.43 TCGA-VS-A9V3-01 8 12423360 12481470 8:12423360-12481470 - AC068587.2 large deletion 0.08 TCGA-VS-A9V3-01 8 124454221 124454221 C T WDYHV1 3'UTR 0.34 TCGA-VS-A9V3-01 8 20110290 20110290 C T LZTS1 Intron 0.47 TCGA-VS-A9V3-01 8 41801361 41801361 G A KAT6A Silent p.I711I 0.39 TCGA-VS-A9V3-01 8 73848354 73848354 C T KCNB2 Missense_Mutation p.S255L 0.35 deleterious(0) probably_damaging(0.99) TCGA-VS-A9V3-01 8 7752270 7752270 C T DEFB4A Silent p.F12F 0.16 TCGA-VS-A9V3-01 8 81897291 81897291 C T PAG1 Missense_Mutation p.G199D 0.40 deleterious(0.03) possibly_damaging(0.867) TCGA-VS-A9V3-01 9 125611809 125611809 A T RC3H2 3'UTR 0.33 TCGA-VS-A9V3-01 9 127262453 127262453 G A NR5A1 Silent p.F262F 0.50 TCGA-VS-A9V3-01 9 135470434 135470434 G A DDX31 Missense_Mutation p.S792L 0.42 deleterious(0) possibly_damaging(0.792) TCGA-VS-A9V3-01 9 139234171 139234171 G A GPSM1 Missense_Mutation p.E328K 0.61 deleterious(0) possibly_damaging(0.701) TCGA-VS-A9V3-01 9 19076668 19076668 G A HAUS6 Missense_Mutation p.S409L 0.48 deleterious(0) probably_damaging(0.995) TCGA-VS-A9V3-01 9 19328082 19328082 G A DENND4C Silent p.L725L 0.36 TCGA-VS-A9V3-01 9 19786483 19786483 C T SLC24A2 Missense_Mutation p.E128K 0.37 deleterious(0.02) benign(0.028) TCGA-VS-A9V3-01 9 33932576 33932576 G A UBAP2 Missense_Mutation p.S720L 0.52 deleterious(0.04) unknown(0) TCGA-VS-A9V3-01 9 35737538 35737538 C T GBA2 Intron 0.33 TCGA-VS-A9V3-01 9 84532918 84532918 G T SPATA31D5P RNA 0.39 TCGA-VS-A9V3-01 9 86907659 86907659 C G SLC28A3 Missense_Mutation p.G316A 0.32 tolerated(0.56) probably_damaging(1) TCGA-VS-A9V3-01 9 96441193 96441193 G A PHF2 3'UTR 0.38 TCGA-VS-A9V3-01 X 101913210 101913210 G A GPRASP1 3'UTR 0.42 TCGA-VS-A9V3-01 X 101971349 101971349 G A GPRASP2 Missense_Mutation p.E518K 0.35 tolerated(0.98) benign(0.036) TCGA-VS-A9V3-01 X 107979013 107979013 C T IRS4 Missense_Mutation p.E188K 0.49 deleterious(0.01) probably_damaging(0.96) TCGA-VS-A9V3-01 X 110538141 110538141 C T DCX 3'UTR 0.41 TCGA-VS-A9V3-01 X 122599615 122599615 C T GRIA3 Silent p.C805C 0.46 TCGA-VS-A9V3-01 X 129149463 129149463 C A BCORL1 Missense_Mutation p.N905K 0.29 benign(0.079) TCGA-VS-A9V3-01 X 140985056 140985056 C T MAGEC3 Silent p.F504F 0.50 TCGA-VS-A9V3-01 X 1510815 1510815 C T SLC25A6 Missense_Mutation p.E30K 0.29 tolerated(0.07) possibly_damaging(0.46) TCGA-VS-A9V3-01 X 17743856 17743856 G A NHS Missense_Mutation p.D523N 0.19 tolerated(0.15) benign(0.272) TCGA-VS-A9V3-01 X 50341523 50341523 C T SHROOM4 Missense_Mutation p.E1319K 0.44 deleterious(0.01) possibly_damaging(0.466) TCGA-VS-A9V3-01 X 55026828 55026828 G A APEX2 5'UTR 0.40 TCGA-VS-A9V3-01 X 68382935 68382935 C G PJA1 Missense_Mutation p.K49N 0.08 tolerated(0.38) benign(0.009) TCGA-VS-A9V3-01 X 8553403 8553403 C T KAL1 Missense_Mutation p.R254K 0.32 deleterious(0.02) possibly_damaging(0.766) TCGA-VS-A9V3-01 X 91132830 91132830 G A PCDH11X Missense_Mutation p.E531K 0.24 deleterious(0) probably_damaging(1) TCGA-VS-A9V3-01 X 91874049 91874049 G C PCDH11X 3'UTR 0.45 TCGA-VS-A9V4-01 10 124543885 124543885 C A DMBT1P1 RNA 0.19 TCGA-VS-A9V4-01 10 124593263 124593263 A G CUZD1 Missense_Mutation p.S526P 0.14 tolerated(0.25) probably_damaging(0.987) TCGA-VS-A9V4-01 10 22825926 22825926 C T PIP4K2A 3'UTR 0.44 TCGA-VS-A9V4-01 10 55587258 55587258 G A PCDH15 Missense_Mutation p.A1421V 0.18 tolerated(0.16) possibly_damaging(0.495) TCGA-VS-A9V4-01 10 73326681 73326681 G T CDH23 Silent p.T204T 0.26 TCGA-VS-A9V4-01 10 76865489 76865489 G A DUSP13 Intron 0.12 TCGA-VS-A9V4-01 10 92508605 92508605 T G HTR7 Missense_Mutation p.E429A 0.12 tolerated(0.12) benign(0.026) TCGA-VS-A9V4-01 11 104905249 104905249 T C CASP1 Intron 0.12 TCGA-VS-A9V4-01 11 118780672 118780672 C T BCL9L 5'UTR 0.38 TCGA-VS-A9V4-01 11 1261502 1261502 C T MUC5B Silent p.C1289C 0.51 TCGA-VS-A9V4-01 11 134131680 134131680 C T ACAD8 Missense_Mutation p.R330W 0.10 deleterious(0) probably_damaging(1) TCGA-VS-A9V4-01 11 3704547 3704547 C T NUP98 Missense_Mutation p.E1601K 0.16 tolerated(0.1) probably_damaging(0.996) TCGA-VS-A9V4-01 11 55419151 55419151 C T OR4S2 Missense_Mutation p.R258C 0.28 deleterious(0.02) benign(0.04) TCGA-VS-A9V4-01 11 56380709 56380709 C G OR5M1 Missense_Mutation p.K90N 0.45 tolerated(0.11) probably_damaging(0.999) TCGA-VS-A9V4-01 11 64888547 64888547 G A FAU Intron 0.33 TCGA-VS-A9V4-01 11 65649985 65649985 G A CTSW Missense_Mutation p.V176I 0.34 tolerated(0.1) benign(0.081) TCGA-VS-A9V4-01 11 93517706 93517706 C T MED17 Silent p.I9I 0.26 TCGA-VS-A9V4-01 11 9455295 9455295 C T IPO7 Missense_Mutation p.A659V 0.10 tolerated(1) benign(0.022) TCGA-VS-A9V4-01 12 114792759 114792759 T G TBX5 3'UTR 0.25 TCGA-VS-A9V4-01 12 31435352 31435352 T C FAM60A 3'UTR 0.14 TCGA-VS-A9V4-01 12 4599688 4599688 C T C12orf4 Silent p.Q522Q 0.18 TCGA-VS-A9V4-01 12 49893916 49893916 G A SPATS2 Missense_Mutation p.R256Q 0.11 deleterious(0.02) benign(0.316) TCGA-VS-A9V4-01 12 52760971 52760971 G A KRT85 Silent p.A73A 0.15 TCGA-VS-A9V4-01 12 54767879 54767879 C G ZNF385A Missense_Mutation p.R100P 0.23 deleterious(0) probably_damaging(1) TCGA-VS-A9V4-01 12 64890184 64890187 TAAG - TBK1 Splice_Site p.X587_splice 0.16 TCGA-VS-A9V4-01 12 66698793 66698793 T C HELB Missense_Mutation p.L157P 0.14 deleterious(0.02) possibly_damaging(0.606) TCGA-VS-A9V4-01 12 81329566 81329566 C T LIN7A Intron 0.11 TCGA-VS-A9V4-01 12 81545495 81545495 A C ACSS3 Intron 0.16 TCGA-VS-A9V4-01 13 115027409 115027410 - T CDC16 Frame_Shift_Ins p.C455Lfs*5 0.18 TCGA-VS-A9V4-01 13 25744303 25744303 C T AMER2 Silent p.A485A 0.39 TCGA-VS-A9V4-01 13 29236577 29236577 G T POMP Missense_Mutation p.D12Y 0.22 deleterious_low_confidence(0) benign(0.315) TCGA-VS-A9V4-01 13 31318261 31318261 C T ALOX5AP Silent p.T45T 0.28 TCGA-VS-A9V4-01 13 33273920 33273920 G A PDS5B Missense_Mutation p.V552M 0.13 tolerated(0.25) benign(0.176) TCGA-VS-A9V4-01 13 36413246 36413246 T G DCLK1 Missense_Mutation p.N368T 0.16 tolerated(0.58) possibly_damaging(0.607) TCGA-VS-A9V4-01 13 36700154 36700154 A C DCLK1 Missense_Mutation p.F41V 0.10 tolerated(0.05) unknown(0) TCGA-VS-A9V4-01 13 58299162 58299162 T C PCDH17 Silent p.L1072L 0.12 TCGA-VS-A9V4-01 13 60435636 60435636 G A DIAPH3 Missense_Mutation p.T881M 0.13 deleterious(0) probably_damaging(1) TCGA-VS-A9V4-01 14 105196468 105196468 G T ADSSL1 Missense_Mutation p.S80I 0.15 deleterious_low_confidence(0.02) benign(0) TCGA-VS-A9V4-01 14 55836203 55836203 A C ATG14 3'UTR 0.14 TCGA-VS-A9V4-01 14 57673193 57673193 G C EXOC5 3'UTR 0.13 TCGA-VS-A9V4-01 14 80328738 80328739 - T NRXN3 3'UTR 0.14 TCGA-VS-A9V4-01 15 42758303 42758303 C T ZNF106 Missense_Mutation p.E22K 0.35 tolerated(0.06) probably_damaging(0.992) TCGA-VS-A9V4-01 15 75108555 75108555 G A LMAN1L Missense_Mutation p.G78D 0.40 deleterious(0) probably_damaging(0.996) TCGA-VS-A9V4-01 15 79382616 79382616 G A RASGRF1 Silent p.R75R 0.42 TCGA-VS-A9V4-01 16 20570751 20570751 T G ACSM2B Missense_Mutation p.S66R 0.19 tolerated(0.06) benign(0.011) TCGA-VS-A9V4-01 16 30536304 30536304 G A ZNF768 Missense_Mutation p.S386L 0.11 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-VS-A9V4-01 16 51175982 51175982 C T SALL1 Missense_Mutation p.E51K 0.15 deleterious(0) probably_damaging(0.994) TCGA-VS-A9V4-01 16 53737973 53737973 T G FTO 5'UTR 0.21 TCGA-VS-A9V4-01 16 70172860 70172860 C T PDPR Silent p.L417L 0.18 TCGA-VS-A9V4-01 16 79630856 79630857 - A MAF Intron 0.11 TCGA-VS-A9V4-01 16 88502512 88502512 C T ZNF469 Silent p.Y2850Y 0.15 TCGA-VS-A9V4-01 17 27232450 27232450 A T PHF12 3'UTR 0.12 TCGA-VS-A9V4-01 17 38183210 38183210 C T MED24 Silent p.E536E 0.08 TCGA-VS-A9V4-01 17 39743015 39743015 G A KRT14 Silent p.I24I 0.17 TCGA-VS-A9V4-01 17 40021317 40021317 C T KLHL11 Missense_Mutation p.A103T 0.07 tolerated(0.22) benign(0.412) TCGA-VS-A9V4-01 17 7495936 7495936 C T MPDU1 3'Flank 0.18 TCGA-VS-A9V4-01 17 7579716 7579716 G - TP53 Frame_Shift_Del p.P27Lfs*17 0.30 TCGA-VS-A9V4-01 19 10795613 10795613 C T ILF3 Intron 0.22 TCGA-VS-A9V4-01 19 10946758 10946758 A G TMED1 Missense_Mutation p.L37P 0.18 deleterious(0.05) probably_damaging(0.926) TCGA-VS-A9V4-01 19 16631020 16631020 C T CHERP Missense_Mutation p.R801Q 0.14 tolerated(0.06) unknown(0) TCGA-VS-A9V4-01 19 47278968 47278968 G A SLC1A5 Silent p.D475D 0.21 TCGA-VS-A9V4-01 19 51671572 51671572 G A CTD-3187F8.14 Intron 0.15 TCGA-VS-A9V4-01 19 56901865 56901865 T C ZNF582 Silent p.S5S 0.13 TCGA-VS-A9V4-01 19 57328018 57328018 G A PEG3 Missense_Mutation p.R598C 0.21 tolerated(0.19) possibly_damaging(0.68) TCGA-VS-A9V4-01 19 58370997 58370997 G A ZNF587 Missense_Mutation p.R406K 0.19 tolerated(0.22) possibly_damaging(0.694) TCGA-VS-A9V4-01 19 8191352 8191352 C T FBN3 Missense_Mutation p.D852N 0.19 tolerated(0.05) probably_damaging(0.975) TCGA-VS-A9V4-01 1 100588814 100588814 T A SASS6 Missense_Mutation p.D53V 0.23 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V4-01 1 101005688 101005688 G C GPR88 3'UTR 0.31 TCGA-VS-A9V4-01 1 10689671 10689671 C T PEX14 Missense_Mutation p.A254V 0.32 tolerated(0.38) benign(0.004) TCGA-VS-A9V4-01 1 13001351 13001351 T G PRAMEF6 Missense_Mutation p.N111T 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-VS-A9V4-01 1 149876083 149876083 A C SV2A 3'UTR 0.23 TCGA-VS-A9V4-01 1 158650447 158650447 C G SPTA1 Missense_Mutation p.D202H 0.15 deleterious(0) possibly_damaging(0.797) TCGA-VS-A9V4-01 1 16921505 16921505 C G NBPF1 Splice_Site 0.07 TCGA-VS-A9V4-01 1 182353623 182353623 C T GLUL Missense_Mutation p.D347N 0.43 deleterious(0.02) possibly_damaging(0.868) TCGA-VS-A9V4-01 1 186281210 186281210 A G TPR 3'UTR 0.33 TCGA-VS-A9V4-01 1 196398720 196398720 A C KCNT2 Missense_Mutation p.V269G 0.14 deleterious(0) probably_damaging(0.98) TCGA-VS-A9V4-01 1 201852017 201852017 T C IPO9 3'UTR 0.15 TCGA-VS-A9V4-01 1 206626686 206626686 G A SRGAP2 Missense_Mutation p.D688N 0.14 tolerated(0.05) possibly_damaging(0.814) TCGA-VS-A9V4-01 1 228539142 228539142 C T OBSCN Silent p.Y7137Y 0.24 TCGA-VS-A9V4-01 1 247836099 247836099 A G OR13G1 Missense_Mutation p.M82T 0.10 deleterious(0.04) benign(0.001) TCGA-VS-A9V4-01 1 247921025 247921025 G T OR1C1 Silent p.I228I 0.33 TCGA-VS-A9V4-01 1 248344061 248344061 G A OR2M2 Missense_Mutation p.M258I 0.18 tolerated(1) benign(0.009) TCGA-VS-A9V4-01 1 28477142 28477142 G A PTAFR Missense_Mutation p.R131C 0.13 deleterious(0) probably_damaging(0.986) TCGA-VS-A9V4-01 1 28600612 28600612 C T SESN2 Silent p.F321F 0.14 TCGA-VS-A9V4-01 1 32688163 32688163 G A EIF3I Missense_Mutation p.E10K 0.17 deleterious(0) possibly_damaging(0.799) TCGA-VS-A9V4-01 1 33354566 33354566 T C HPCA Missense_Mutation p.S23P 0.31 deleterious(0.03) benign(0.068) TCGA-VS-A9V4-01 1 47681997 47681997 G A TAL1 3'UTR 0.45 TCGA-VS-A9V4-01 1 74492451 74492451 A G LRRIQ3 3'UTR 0.12 TCGA-VS-A9V4-01 1 85112090 85112090 A C SSX2IP 3'UTR 0.12 TCGA-VS-A9V4-01 1 95709932 95709932 A G RWDD3 Missense_Mutation p.K84R 0.33 tolerated(0.53) benign(0.025) TCGA-VS-A9V4-01 20 23016578 23016578 G A SSTR4 Missense_Mutation p.R153H 0.18 deleterious(0.02) possibly_damaging(0.893) TCGA-VS-A9V4-01 20 41101094 41101094 T A PTPRT Missense_Mutation p.N421I 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-VS-A9V4-01 20 43851677 43851677 C A SEMG2 Nonsense_Mutation p.Y468* 0.13 TCGA-VS-A9V4-01 20 46313213 46313213 A T SULF2 Missense_Mutation p.L284M 0.30 tolerated(0.07) possibly_damaging(0.609) TCGA-VS-A9V4-01 20 60739237 60739237 A G SS18L1 Missense_Mutation p.Y253C 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VS-A9V4-01 21 41151063 41151063 G A IGSF5 Silent p.P255P 0.29 TCGA-VS-A9V4-01 22 21538437 21538437 C T FAM230B RNA 0.06 TCGA-VS-A9V4-01 22 21982787 21982787 C T YDJC Missense_Mutation p.D298N 0.12 tolerated(0.06) benign(0.084) TCGA-VS-A9V4-01 22 24107045 24107045 C T C22orf15 Missense_Mutation p.R131W 0.12 deleterious(0) probably_damaging(0.984) TCGA-VS-A9V4-01 22 31851124 31851124 C A EIF4ENIF1 Missense_Mutation p.S426I 0.05 tolerated(0.08) probably_damaging(0.998) TCGA-VS-A9V4-01 22 51207056 51207056 G A RABL2B 3'UTR 0.18 TCGA-VS-A9V4-01 2 106694410 106694410 A G C2orf40 3'UTR 0.21 TCGA-VS-A9V4-01 2 111144654 111144654 G C LINC01106 5'Flank 0.13 TCGA-VS-A9V4-01 2 128381783 128381783 G A MYO7B Missense_Mutation p.R1286Q 0.23 deleterious(0) possibly_damaging(0.899) TCGA-VS-A9V4-01 2 131523189 131523189 G A AMER3 3'UTR 0.13 TCGA-VS-A9V4-01 2 136026541 136026541 C T ZRANB3 Silent p.L459L 0.13 TCGA-VS-A9V4-01 2 138163318 138163318 A C THSD7B Missense_Mutation p.K879T 0.33 deleterious(0) possibly_damaging(0.607) TCGA-VS-A9V4-01 2 141641549 141641549 T C LRP1B Missense_Mutation p.T1336A 0.15 benign(0.001) TCGA-VS-A9V4-01 2 149220233 149220233 T C MBD5 Missense_Mutation p.C66R 0.12 deleterious(0) unknown(0) TCGA-VS-A9V4-01 2 170090001 170090001 C T LRP2 Missense_Mutation p.G1673E 0.33 probably_damaging(1) TCGA-VS-A9V4-01 2 172333452 172333452 A T DCAF17 Missense_Mutation p.N392Y 0.32 deleterious(0.01) benign(0.021) TCGA-VS-A9V4-01 2 179438820 179438820 C T TTN Silent p.E24013E 0.11 TCGA-VS-A9V4-01 2 185803925 185803925 A C ZNF804A 3'UTR 0.05 TCGA-VS-A9V4-01 2 210561744 210561744 T G MAP2 Silent p.T1497T 0.12 TCGA-VS-A9V4-01 2 43927134 43927134 C T PLEKHH2 Missense_Mutation p.P346L 0.29 tolerated_low_confidence(0.21) benign(0) TCGA-VS-A9V4-01 2 80835353 80835353 A C CTNNA2 Missense_Mutation p.Q780H 0.22 deleterious(0) possibly_damaging(0.847) TCGA-VS-A9V4-01 2 80875050 80875050 C T CTNNA2 3'UTR 0.11 TCGA-VS-A9V4-01 3 137965125 137965125 T G ARMC8 Intron 0.14 TCGA-VS-A9V4-01 3 14188804 14188804 G A XPC Missense_Mutation p.R864C 0.21 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V4-01 3 14861931 14861931 C T FGD5 Silent p.D451D 0.26 TCGA-VS-A9V4-01 3 155393926 155393926 G A PLCH1 5'Flank 0.10 TCGA-VS-A9V4-01 3 15719791 15719791 G A ANKRD28 Nonsense_Mutation p.Q848* 0.07 TCGA-VS-A9V4-01 3 178951920 178951920 G C PIK3CA Missense_Mutation p.R992P 0.08 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V4-01 3 178952287 178952287 T C PIK3CA 3'UTR 0.08 TCGA-VS-A9V4-01 3 195000085 195000085 C T ACAP2 Missense_Mutation p.R770H 0.33 deleterious(0) probably_damaging(0.975) TCGA-VS-A9V4-01 3 196867039 196867039 C A DLG1 Nonsense_Mutation p.G262* 0.12 TCGA-VS-A9V4-01 3 52553333 52553333 C G STAB1 Silent p.A1696A 0.23 TCGA-VS-A9V4-01 3 97887592 97887592 T C OR5H15 Missense_Mutation p.F17L 0.14 tolerated(1) benign(0.001) TCGA-VS-A9V4-01 4 156631944 156631944 A T GUCY1A3 Missense_Mutation p.R209S 0.19 tolerated(0.51) benign(0.01) TCGA-VS-A9V4-01 4 157771561 157771561 T G PDGFC Missense_Mutation p.Q42H 0.26 tolerated(0.19) benign(0.092) TCGA-VS-A9V4-01 4 5961331 5961331 G A C4orf50 Missense_Mutation p.T675M 0.17 tolerated_low_confidence(0.4) benign(0.073) TCGA-VS-A9V4-01 4 81125386 81125387 TG - PRDM8 3'UTR 0.16 TCGA-VS-A9V4-01 5 112128142 112128142 G A APC Splice_Site p.X216_splice 0.28 TCGA-VS-A9V4-01 5 118468851 118468851 T G DMXL1 Missense_Mutation p.L447R 0.32 tolerated(0.52) benign(0.09) TCGA-VS-A9V4-01 5 140768991 140768991 G A PCDHGB4 Missense_Mutation p.A514T 0.44 deleterious(0) probably_damaging(0.975) TCGA-VS-A9V4-01 5 153190744 153190744 A G GRIA1 Missense_Mutation p.S904G 0.23 tolerated_low_confidence(0.42) benign(0.005) TCGA-VS-A9V4-01 5 156514043 156514043 C A HAVCR2 3'UTR 0.33 TCGA-VS-A9V4-01 5 170139863 170139863 G A KCNIP1 Missense_Mutation p.A23T 0.44 tolerated(0.57) benign(0) TCGA-VS-A9V4-01 5 171520784 171520784 C T STK10 Missense_Mutation p.V396M 0.56 tolerated(0.12) benign(0.24) TCGA-VS-A9V4-01 5 72351904 72351904 C T FCHO2 Missense_Mutation p.T408I 0.35 tolerated(0.19) benign(0.012) TCGA-VS-A9V4-01 5 88027604 88027604 C T MEF2C Missense_Mutation p.R269H 0.22 tolerated(0.06) probably_damaging(0.966) TCGA-VS-A9V4-01 5 89812445 89812445 G A LYSMD3 3'UTR 0.27 TCGA-VS-A9V4-01 6 101296140 101296140 T A ASCC3 Nonsense_Mutation p.K229* 0.33 TCGA-VS-A9V4-01 6 102516825 102516825 T A GRIK2 3'UTR 0.17 TCGA-VS-A9V4-01 6 109703655 109703655 C T CD164 5'Flank 0.08 TCGA-VS-A9V4-01 6 112441659 112441659 G A LAMA4 Missense_Mutation p.R1498C 0.16 deleterious(0.02) possibly_damaging(0.677) TCGA-VS-A9V4-01 6 118887371 118887371 A C CEP85L Missense_Mutation p.L117R 0.14 tolerated(0.26) benign(0.047) TCGA-VS-A9V4-01 6 127517436 127517436 C T RSPO3 3'UTR 0.15 TCGA-VS-A9V4-01 6 13977563 13977563 G A RNF182 Silent p.T71T 0.30 TCGA-VS-A9V4-01 6 152673328 152673328 C T SYNE1 Missense_Mutation p.R3805Q 0.20 probably_damaging(0.997) TCGA-VS-A9V4-01 6 29588948 29588948 G A GABBR1 Missense_Mutation p.A418V 0.11 deleterious(0.02) possibly_damaging(0.607) TCGA-VS-A9V4-01 6 65707493 65707493 G A EYS Silent p.T747T 0.11 TCGA-VS-A9V4-01 6 7861817 7861817 G A BMP6 Missense_Mutation p.V331M 0.31 deleterious(0) probably_damaging(0.994) TCGA-VS-A9V4-01 6 89977510 89977510 C A GABRR2 Silent p.L208L 0.22 TCGA-VS-A9V4-01 6 90312803 90312803 C T ANKRD6 Missense_Mutation p.A92V 0.33 tolerated(0.09) benign(0.212) TCGA-VS-A9V4-01 6 93952434 93952435 - A EPHA7 3'UTR 0.13 TCGA-VS-A9V4-01 7 128488022 128488022 C T FLNC Missense_Mutation p.R1494W 0.13 deleterious(0.04) possibly_damaging(0.67) TCGA-VS-A9V4-01 7 138602901 138602901 C T KIAA1549 Missense_Mutation p.V491I 0.26 tolerated(0.08) benign(0.016) TCGA-VS-A9V4-01 7 142563770 142563770 G T EPHB6 Missense_Mutation p.M386I 0.20 tolerated(1) benign(0.439) TCGA-VS-A9V4-01 7 31592725 31592725 C T CCDC129 Silent p.S55S 0.30 TCGA-VS-A9V4-01 7 4213941 4213941 G T SDK1 Nonsense_Mutation p.E1630* 0.32 TCGA-VS-A9V4-01 7 53104213 53104213 C T POM121L12 Silent p.F283F 0.29 TCGA-VS-A9V4-01 7 91779964 91779965 - A LRRD1 Frame_Shift_Ins p.S721Ffs*8 0.20 TCGA-VS-A9V4-01 8 109796830 109796830 T G TMEM74 Missense_Mutation p.E166D 0.23 deleterious(0.04) probably_damaging(0.942) TCGA-VS-A9V4-01 8 3224608 3224608 G A CSMD1 Missense_Mutation p.R1021W 0.15 probably_damaging(1) TCGA-VS-A9V4-01 8 33449065 33449065 T - DUSP26 3'UTR 0.16 TCGA-VS-A9V4-01 8 51449235 51449235 C A SNTG1 Intron 0.56 TCGA-VS-A9V4-01 8 67417667 67417667 G A C8orf46 Missense_Mutation p.G62R 0.19 tolerated(0.43) benign(0.005) TCGA-VS-A9V4-01 8 75278519 75278519 A G GDAP1 3'UTR 0.26 TCGA-VS-A9V4-01 9 131678600 131678600 C G LRRC8A Missense_Mutation p.P795A 0.30 deleterious(0.02) benign(0.025) TCGA-VS-A9V4-01 9 132996027 132996027 C T NCS1 3'UTR 0.09 TCGA-VS-A9V4-01 9 14082212 14082213 - A NFIB 3'UTR 0.18 TCGA-VS-A9V4-01 9 26923219 26923219 G C PLAA Missense_Mutation p.I332M 0.10 deleterious(0) probably_damaging(0.968) TCGA-VS-A9V4-01 9 34491509 34491509 C T DNAI1 Missense_Mutation p.T213M 0.31 tolerated(0.25) benign(0.144) TCGA-VS-A9V4-01 9 34649051 34649051 T G GALT Missense_Mutation p.S293A 0.12 deleterious(0.04) possibly_damaging(0.756) TCGA-VS-A9V4-01 9 3829307 3829307 C G GLIS3 Intron 0.16 TCGA-VS-A9V4-01 9 77300608 77300608 T G RORB 3'UTR 0.14 TCGA-VS-A9V4-01 X 10153149 10153149 C T CLCN4 Missense_Mutation p.T26M 0.19 tolerated(0.08) possibly_damaging(0.547) TCGA-VS-A9V4-01 X 110494454 110494454 A G CAPN6 Silent p.S318S 0.15 TCGA-VS-A9V4-01 X 112054596 112054596 G A AMOT Missense_Mutation p.S473L 0.10 unknown(0) TCGA-VS-A9V4-01 X 119293178 119293178 G C RHOXF2 Missense_Mutation p.E113Q 0.05 tolerated(0.09) probably_damaging(0.986) TCGA-VS-A9V4-01 X 129208638 129208638 G A ELF4 Silent p.D55D 0.39 TCGA-VS-A9V4-01 X 148076394 148076394 T G AFF2 3'UTR 0.10 TCGA-VS-A9V4-01 X 152159024 152159024 A C PNMA5 Silent p.S373S 0.21 TCGA-VS-A9V4-01 X 153461494 153461494 C T OPN1MW Missense_Mutation p.T353M 0.12 deleterious(0.02) unknown(0) TCGA-VS-A9V4-01 X 24226412 24226412 G A ZFX Missense_Mutation p.A340T 0.29 tolerated(0.7) benign(0.05) TCGA-VS-A9V4-01 X 44109544 44109544 G T EFHC2 Missense_Mutation p.H252N 0.17 tolerated(0.06) possibly_damaging(0.612) TCGA-VS-A9V4-01 X 48318021 48318021 G A SLC38A5 Silent p.S406S 0.18 TCGA-VS-A9V4-01 X 48791833 48791833 A G OTUD5 Silent p.R326R 0.08 TCGA-VS-A9V4-01 X 53456723 53456723 T A RIBC1 Intron 0.30 TCGA-VS-A9V4-01 X 68382265 68382265 T G PJA1 Missense_Mutation p.I273L 0.13 tolerated(0.3) benign(0.039) TCGA-VS-A9V4-01 X 76909629 76909629 G A ATRX Nonsense_Mutation p.R1426* 0.09 TCGA-VS-A9V4-01 X 8767115 8767115 A C FAM9A Missense_Mutation p.F38V 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.765) TCGA-VS-A9V5-01 10 102289552 102289552 C T NDUFB8 Silent p.R19R 0.33 TCGA-VS-A9V5-01 10 120354138 120354138 C T PRLHR Missense_Mutation p.D207N 0.37 tolerated(0.33) benign(0.164) TCGA-VS-A9V5-01 10 121196274 121196274 G A GRK5 Missense_Mutation p.E284K 0.40 tolerated(0.06) benign(0.419) TCGA-VS-A9V5-01 10 124009171 124009171 G A TACC2 Missense_Mutation p.E2925K 0.32 probably_damaging(0.984) TCGA-VS-A9V5-01 10 127541123 127541123 G A DHX32 Missense_Mutation p.S394L 0.50 tolerated(0.65) benign(0.027) TCGA-VS-A9V5-01 10 43015550 43015550 T - ZNF37BP RNA 0.28 TCGA-VS-A9V5-01 10 74094730 74094730 G A DNAJB12 3'UTR 0.26 TCGA-VS-A9V5-01 10 74906052 74906052 G A ECD Missense_Mutation p.S370L 0.37 deleterious(0) probably_damaging(0.964) TCGA-VS-A9V5-01 11 107422552 107422552 G A ALKBH8 Nonsense_Mutation p.Q228* 0.38 TCGA-VS-A9V5-01 11 107940894 107940894 G A CUL5 Missense_Mutation p.M284I 0.39 deleterious(0.02) possibly_damaging(0.459) TCGA-VS-A9V5-01 11 11643001 11643001 G A GALNT18 Missense_Mutation p.A47V 0.35 tolerated(0.31) benign(0) TCGA-VS-A9V5-01 11 1244326 1244326 C T MUC5B 5'UTR 0.57 TCGA-VS-A9V5-01 11 130131048 130131048 G A ZBTB44 Nonsense_Mutation p.Q241* 0.42 TCGA-VS-A9V5-01 11 56000356 56000356 C G OR5T2 Silent p.L102L 0.35 TCGA-VS-A9V5-01 11 56000627 56000627 A T OR5T2 Missense_Mutation p.I12N 0.30 deleterious_low_confidence(0.02) benign(0) TCGA-VS-A9V5-01 11 563207 563207 G A RASSF7 Missense_Mutation p.E281K 0.30 deleterious(0.02) possibly_damaging(0.556) TCGA-VS-A9V5-01 11 63963134 63963134 G A STIP1 Missense_Mutation p.R174Q 0.11 tolerated(0.06) probably_damaging(0.954) TCGA-VS-A9V5-01 11 64083472 64083472 G A ESRRA 3'UTR 0.28 TCGA-VS-A9V5-01 11 68671447 68671447 C T IGHMBP2 Silent p.F9F 0.37 TCGA-VS-A9V5-01 11 86106372 86106372 C T CCDC81 Intron 0.39 TCGA-VS-A9V5-01 11 94732273 94732273 C T KDM4D 3'UTR 0.25 TCGA-VS-A9V5-01 11 96126720 96126720 C T JRKL 3'UTR 0.45 TCGA-VS-A9V5-01 12 13717304 13717304 C G GRIN2B Missense_Mutation p.E956D 0.69 tolerated(1) benign(0.01) TCGA-VS-A9V5-01 12 28122395 28122395 G A PTHLH Silent p.V11V 0.82 TCGA-VS-A9V5-01 12 4643380 4643380 T C C12orf4 Silent p.K89K 0.54 TCGA-VS-A9V5-01 12 48723596 48723596 G A H1FNT Silent p.R174R 0.35 TCGA-VS-A9V5-01 12 49110385 49110385 C T CCNT1 Missense_Mutation p.R25H 0.48 deleterious(0) probably_damaging(0.996) TCGA-VS-A9V5-01 12 57858491 57858491 T C GLI1 Silent p.L77L 0.41 TCGA-VS-A9V5-01 12 66531892 66531892 G A TMBIM4 Missense_Mutation p.L189F 0.46 deleterious(0.04) probably_damaging(0.984) TCGA-VS-A9V5-01 12 69667076 69667076 G A CPSF6 3'UTR 0.43 TCGA-VS-A9V5-01 12 91572210 91572210 A G DCN Silent p.V40V 0.35 TCGA-VS-A9V5-01 13 20715910 20715910 G A GJA3 3'UTR 0.36 TCGA-VS-A9V5-01 13 25284679 25284679 C T ATP12A Silent p.L955L 0.40 TCGA-VS-A9V5-01 14 103803032 103803032 G T EIF5 Missense_Mutation p.G58V 0.29 deleterious(0) probably_damaging(0.926) TCGA-VS-A9V5-01 14 105716086 105716086 C T BTBD6 Silent p.L179L 0.32 TCGA-VS-A9V5-01 14 35480737 35480737 A G SRP54 Missense_Mutation p.I170V 0.33 tolerated(0.4) benign(0) TCGA-VS-A9V5-01 14 51094911 51094911 C A ATL1 Missense_Mutation p.L428I 0.34 tolerated(0.29) benign(0.012) TCGA-VS-A9V5-01 14 57676476 57676476 C T EXOC5 Missense_Mutation p.V583I 0.20 tolerated(0.49) benign(0.044) TCGA-VS-A9V5-01 14 66974754 66974754 C T GPHN 5'UTR 0.33 TCGA-VS-A9V5-01 14 76668237 76668237 A G GPATCH2L 3'UTR 0.09 TCGA-VS-A9V5-01 15 102192531 102192531 G A TM2D3 Missense_Mutation p.R12C 0.46 tolerated(0.18) benign(0.001) TCGA-VS-A9V5-01 15 20739803 20739803 C A GOLGA6L6 Missense_Mutation p.M649I 0.19 unknown(0) TCGA-VS-A9V5-01 15 34014950 34014950 C T RYR3 Silent p.V2218V 0.38 TCGA-VS-A9V5-01 15 43622126 43622126 C T LCMT2 Missense_Mutation p.E188K 0.33 deleterious(0) probably_damaging(1) TCGA-VS-A9V5-01 15 50866621 50866621 C T TRPM7 Missense_Mutation p.E1720K 0.40 deleterious(0) probably_damaging(1) TCGA-VS-A9V5-01 15 57918059 57918059 C G GCOM1 Nonsense_Mutation p.S165* 0.55 TCGA-VS-A9V5-01 15 65425351 65425351 C T PDCD7 Missense_Mutation p.E257K 0.42 tolerated(0.72) benign(0.061) TCGA-VS-A9V5-01 15 65917853 65917853 C G SLC24A1 Missense_Mutation p.P479A 0.40 probably_damaging(0.945) TCGA-VS-A9V5-01 15 69324011 69324011 C T NOX5 Missense_Mutation p.S160L 0.40 deleterious(0.05) benign(0.022) TCGA-VS-A9V5-01 15 72106512 72106512 C T CTD-2524L6.3 5'Flank 0.24 TCGA-VS-A9V5-01 16 20370838 20370838 C T PDILT Missense_Mutation p.E520K 0.51 tolerated(0.22) benign(0.005) TCGA-VS-A9V5-01 16 72821533 72821533 G A ZFHX3 Missense_Mutation p.L3548F 0.56 unknown(0) TCGA-VS-A9V5-01 17 15406514 15406514 C T TVP23C Silent p.L165L 0.61 TCGA-VS-A9V5-01 17 16321002 16321002 C G TRPV2 Missense_Mutation p.S7C 0.31 deleterious_low_confidence(0.01) benign(0.379) TCGA-VS-A9V5-01 17 16526505 16526505 G A ZNF624 Silent p.F565F 0.42 TCGA-VS-A9V5-01 17 16843637 16843637 C G TNFRSF13B Intron 0.28 TCGA-VS-A9V5-01 17 19285435 19285435 C T MAPK7 Missense_Mutation p.P607S 0.45 tolerated(0.44) unknown(0) TCGA-VS-A9V5-01 17 22024685 22024685 C T MTRNR2L1 3'Flank 0.48 TCGA-VS-A9V5-01 17 2224848 2224848 G C SRR Missense_Mutation p.D178H 0.51 deleterious(0) probably_damaging(0.997) TCGA-VS-A9V5-01 17 3324826 3324826 G A OR3A3 Silent p.%3D 0.41 TCGA-VS-A9V5-01 17 33324841 33324841 C T LIG3 Silent p.V636V 0.43 TCGA-VS-A9V5-01 17 37830897 37830897 G C PGAP3 Missense_Mutation p.F156L 0.03 deleterious(0) probably_damaging(1) TCGA-VS-A9V5-01 17 40557040 40557040 G A PTRF Missense_Mutation p.R280C 0.38 deleterious(0) probably_damaging(0.988) TCGA-VS-A9V5-01 17 41123676 41123676 T A PTGES3L Missense_Mutation p.D114V 0.36 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V5-01 17 43861868 43861868 G A CRHR1 5'Flank 0.41 TCGA-VS-A9V5-01 17 46682302 46682302 G A HOXB6 5'UTR 0.39 TCGA-VS-A9V5-01 17 48263278 48263278 C T COL1A1 Missense_Mutation p.C1370Y 0.53 benign(0.126) TCGA-VS-A9V5-01 17 67212406 67212406 A G ABCA10 Silent p.T208T 0.38 TCGA-VS-A9V5-01 17 74309953 74309953 C T PRPSAP1 Silent p.K267K 0.42 TCGA-VS-A9V5-01 17 79428941 79428941 G A RP11-1055B8.7 Missense_Mutation p.E2418K 0.47 probably_damaging(0.94) TCGA-VS-A9V5-01 18 34839128 34839128 G C CELF4 Intron 0.34 TCGA-VS-A9V5-01 18 44104696 44104696 C T LOXHD1 Missense_Mutation p.R461Q 0.40 tolerated(0.1) probably_damaging(0.998) TCGA-VS-A9V5-01 18 55336508 55336508 G T ATP8B1 Intron 0.19 TCGA-VS-A9V5-01 18 60191522 60191522 G A ZCCHC2 Missense_Mutation p.A289T 0.52 tolerated(0.6) benign(0.001) TCGA-VS-A9V5-01 19 17213025 17213025 C T MYO9B Silent p.L166L 0.24 TCGA-VS-A9V5-01 19 18280614 18280614 G A PIK3R2 3'UTR 0.41 TCGA-VS-A9V5-01 19 18466742 18466757 TGCATGTGTACGAGAT - PGPEP1 Frame_Shift_Del p.H43Rfs*91 0.34 TCGA-VS-A9V5-01 19 18972922 18972922 A G UPF1 Missense_Mutation p.N854S 0.47 tolerated(0.58) benign(0.001) TCGA-VS-A9V5-01 19 22155256 22155256 G A ZNF208 Silent p.P860P 0.59 TCGA-VS-A9V5-01 19 22155257 22155257 G A ZNF208 Missense_Mutation p.P860L 0.59 tolerated(0.06) unknown(0) TCGA-VS-A9V5-01 19 38579477 38579477 T G SIPA1L3 Missense_Mutation p.F551V 0.21 tolerated(0.11) benign(0.348) TCGA-VS-A9V5-01 19 39760615 39760615 G T IFNL2 Missense_Mutation p.D189Y 0.25 deleterious(0) probably_damaging(1) TCGA-VS-A9V5-01 19 40005958 40005958 C G SELV Missense_Mutation p.P36A 0.42 tolerated(0.22) unknown(0) TCGA-VS-A9V5-01 19 41111525 41111525 C T LTBP4 Silent p.F286F 0.31 TCGA-VS-A9V5-01 19 41223471 41223471 G A ITPKC Missense_Mutation p.G144D 0.43 deleterious_low_confidence(0.05) possibly_damaging(0.902) TCGA-VS-A9V5-01 19 46328456 46328456 C T SYMPK Silent p.R821R 0.48 TCGA-VS-A9V5-01 19 48643342 48643342 G A LIG1 Missense_Mutation p.P325S 0.16 tolerated(0.75) benign(0.003) TCGA-VS-A9V5-01 19 4896791 4896791 G A ARRDC5 Silent p.F131F 0.58 TCGA-VS-A9V5-01 19 50169195 50169195 C T BCL2L12 Silent p.L39L 0.40 TCGA-VS-A9V5-01 19 51009379 51009379 C T JOSD2 3'UTR 0.45 TCGA-VS-A9V5-01 19 53383862 53383862 G C ZNF320 Nonsense_Mutation p.S506* 0.36 TCGA-VS-A9V5-01 19 53473925 53473925 C T CTD-2620I22.1 RNA 0.23 TCGA-VS-A9V5-01 19 54599061 54599061 C T OSCAR Missense_Mutation p.G248E 0.27 deleterious_low_confidence(0) benign(0.263) TCGA-VS-A9V5-01 19 622892 622892 C T POLRMT Missense_Mutation p.E462K 0.22 tolerated(0.59) benign(0.001) TCGA-VS-A9V5-01 1 120854696 120854696 G T FAM72B 3'UTR 0.29 TCGA-VS-A9V5-01 1 1688117 1688117 C T NADK Intron 0.47 TCGA-VS-A9V5-01 1 200960109 200960109 G A KIF21B Missense_Mutation p.R875C 0.47 deleterious(0) benign(0.328) TCGA-VS-A9V5-01 1 201983019 201983019 G T ELF3 Nonsense_Mutation p.E290* 0.32 TCGA-VS-A9V5-01 1 218504518 218504518 A G RRP15 3'UTR 0.24 TCGA-VS-A9V5-01 1 220835976 220835976 G A MARK1 3'Flank 0.44 TCGA-VS-A9V5-01 1 22965479 22965479 C T C1QA Missense_Mutation p.P106L 0.50 deleterious(0.01) benign(0.099) TCGA-VS-A9V5-01 1 37271860 37271860 T CC GRIK3 Frame_Shift_Ins p.K720Rfs*42 0.31 TCGA-VS-A9V5-01 1 46663497 46663497 G A POMGNT1 5'UTR 0.29 TCGA-VS-A9V5-01 1 55136563 55136563 G A MROH7 Silent p.A520A 0.31 TCGA-VS-A9V5-01 1 86200581 86200581 T C COL24A1 Missense_Mutation p.I1617V 0.35 tolerated(0.51) benign(0.003) TCGA-VS-A9V5-01 1 87045882 87045882 C T CLCA4 Missense_Mutation p.P872S 0.34 deleterious(0.02) possibly_damaging(0.53) TCGA-VS-A9V5-01 1 98186429 98186429 G A DPYD Intron 0.43 TCGA-VS-A9V5-01 20 36151804 36151804 G A NNAT 3'UTR 0.56 TCGA-VS-A9V5-01 20 36718379 36718379 G A RPRD1B 3'UTR 0.36 TCGA-VS-A9V5-01 20 44979071 44979071 C T SLC35C2 Missense_Mutation p.E354K 0.42 tolerated(0.08) benign(0.003) TCGA-VS-A9V5-01 20 45816698 45816698 C T EYA2 Intron 0.25 TCGA-VS-A9V5-01 20 47309274 47309274 G A PREX1 Silent p.L324L 0.39 TCGA-VS-A9V5-01 20 57089838 57089838 G A APCDD1L 5'UTR 0.22 TCGA-VS-A9V5-01 20 60734945 60734945 C T SS18L1 Silent p.I53I 0.32 TCGA-VS-A9V5-01 20 61945095 61945095 C A COL20A1 Missense_Mutation p.S737Y 0.30 tolerated(1) benign(0.202) TCGA-VS-A9V5-01 21 33064746 33064746 G A SCAF4 Silent p.L510L 0.50 TCGA-VS-A9V5-01 22 20103221 20103221 C G TRMT2A Missense_Mutation p.E228Q 0.35 tolerated(0.17) benign(0.04) TCGA-VS-A9V5-01 22 20103660 20103660 C G TRMT2A Missense_Mutation p.R167P 0.28 tolerated(0.09) benign(0.008) TCGA-VS-A9V5-01 22 38037464 38037464 G A SH3BP1 Silent p.G62G 0.33 TCGA-VS-A9V5-01 22 39174704 39174704 C T DNAL4 3'UTR 0.33 TCGA-VS-A9V5-01 22 39261744 39261744 C T CBX6 3'UTR 0.52 TCGA-VS-A9V5-01 22 41831082 41831082 C T TOB2 3'UTR 0.45 TCGA-VS-A9V5-01 22 42383284 42383284 G A SEPT3 Missense_Mutation p.E136K 0.24 deleterious(0.03) benign(0.252) TCGA-VS-A9V5-01 2 120012393 120012393 C T STEAP3 Missense_Mutation p.S395L 0.63 deleterious(0.05) possibly_damaging(0.522) TCGA-VS-A9V5-01 2 196601675 196601675 G A SLC39A10 3'UTR 0.46 TCGA-VS-A9V5-01 2 25170485 25170485 C G DNAJC27 Nonstop_Mutation p.*274Yext*18 0.27 TCGA-VS-A9V5-01 2 29294676 29294676 C G C2orf71 Missense_Mutation p.E818Q 0.29 deleterious(0.01) benign(0.3) TCGA-VS-A9V5-01 2 44503083 44503083 G A SLC3A1 Missense_Mutation p.D137N 0.24 deleterious(0.03) probably_damaging(0.948) TCGA-VS-A9V5-01 2 45879176 45879176 C T PRKCE 5'UTR 0.55 TCGA-VS-A9V5-01 2 70995180 70995180 G A ADD2 5'UTR 0.60 TCGA-VS-A9V5-01 2 70995183 70995183 C T ADD2 5'UTR 0.28 TCGA-VS-A9V5-01 2 85836599 85836599 C T C2orf68 Missense_Mutation p.E113K 0.23 tolerated(0.05) possibly_damaging(0.733) TCGA-VS-A9V5-01 2 99235644 99235644 C T MGAT4A 3'UTR 0.58 TCGA-VS-A9V5-01 3 108626998 108626998 C G GUCA1C Missense_Mutation p.E167D 0.44 tolerated(0.59) benign(0) TCGA-VS-A9V5-01 3 111852100 111852100 G A GCSAM 5'UTR 0.40 TCGA-VS-A9V5-01 3 125874242 125874242 C T ALDH1L1 Intron 0.43 TCGA-VS-A9V5-01 3 127391827 127391827 C T ABTB1 5'UTR 0.42 TCGA-VS-A9V5-01 3 132235633 132235633 G T DNAJC13 Missense_Mutation p.M1882I 0.30 deleterious(0.03) benign(0.087) TCGA-VS-A9V5-01 3 169684617 169684617 G A SEC62 Missense_Mutation p.E3K 0.41 deleterious(0.01) benign(0.345) TCGA-VS-A9V5-01 3 47155448 47155448 G A SETD2 Nonsense_Mutation p.Q1545* 0.74 TCGA-VS-A9V5-01 3 51266137 51266137 C A DOCK3 Missense_Mutation p.L565M 0.25 tolerated(0.06) probably_damaging(0.992) TCGA-VS-A9V5-01 4 126412392 126412392 C G FAT4 Missense_Mutation p.I4805M 0.34 probably_damaging(0.994) TCGA-VS-A9V5-01 4 185549765 185549765 C T CASP3 3'UTR 0.45 TCGA-VS-A9V5-01 4 186339651 186339651 C T UFSP2 Missense_Mutation p.E93K 0.44 deleterious(0.02) benign(0.293) TCGA-VS-A9V5-01 4 187115725 187115725 C T CYP4V2 Missense_Mutation p.P96S 0.21 tolerated(0.07) possibly_damaging(0.513) TCGA-VS-A9V5-01 4 515520 515520 A T PIGG Silent p.S468S 0.36 TCGA-VS-A9V5-01 4 88372823 88372823 C T NUDT9 Missense_Mutation p.T242I 0.33 deleterious(0.01) benign(0.049) TCGA-VS-A9V5-01 5 110407026 110407026 G T TSLP 5'Flank 0.45 TCGA-VS-A9V5-01 5 11385073 11385073 G A CTNND2 Missense_Mutation p.A294V 0.42 tolerated(0.09) benign(0.002) TCGA-VS-A9V5-01 5 13922369 13922369 C T DNAH5 Silent p.S169S 0.19 TCGA-VS-A9V5-01 5 170738813 170738850 GCGCCCCGTCCCGCCCCAGGCCCGGGCCTGACAAGAAA - TLX3 3'UTR 0.15 TCGA-VS-A9V5-01 5 176079906 176079906 C A TSPAN17 Missense_Mutation p.Q150K 0.31 deleterious(0.01) probably_damaging(0.925) TCGA-VS-A9V5-01 5 37020639 37020639 G - NIPBL Frame_Shift_Del p.D1697Mfs*45 0.25 TCGA-VS-A9V5-01 5 43492321 43492321 C G C5orf34 Missense_Mutation p.E526Q 0.41 deleterious(0.05) possibly_damaging(0.904) TCGA-VS-A9V5-01 5 72419731 72419731 C G TMEM171 Missense_Mutation p.F177L 0.31 tolerated(0.12) probably_damaging(0.999) TCGA-VS-A9V5-01 5 74060893 74060893 G A GFM2 Intron 0.60 TCGA-VS-A9V5-01 5 78329198 78329198 T A DMGDH Missense_Mutation p.K409N 0.29 deleterious(0.04) possibly_damaging(0.794) TCGA-VS-A9V5-01 5 93294661 93294661 C T FAM172A Missense_Mutation p.E130K 0.41 tolerated(0.05) benign(0.038) TCGA-VS-A9V5-01 5 93809176 93809176 G T KIAA0825 Missense_Mutation p.L426I 0.27 tolerated(0.32) possibly_damaging(0.53) TCGA-VS-A9V5-01 6 101847085 101847085 C A GRIK2 5'UTR 0.22 TCGA-VS-A9V5-01 6 122766186 122766186 C T SERINC1 3'UTR 0.36 TCGA-VS-A9V5-01 6 129612795 129612795 T G LAMA2 Missense_Mutation p.V929G 0.34 deleterious(0.04) benign(0.201) TCGA-VS-A9V5-01 6 136512997 136512997 C T PDE7B 3'UTR 0.38 TCGA-VS-A9V5-01 6 159655360 159655360 C T FNDC1 Silent p.V1272V 0.34 TCGA-VS-A9V5-01 6 160670292 160670292 C G SLC22A2 Missense_Mutation p.Q266H 0.39 deleterious(0) probably_damaging(1) TCGA-VS-A9V5-01 6 167271748 167271748 C T RP11-514O12.4 Splice_Site p.X145_splice 0.43 TCGA-VS-A9V5-01 6 24403198 24403198 A G MRS2 5'UTR 0.44 TCGA-VS-A9V5-01 6 25921236 25921236 G T SLC17A2 Nonsense_Mutation p.S187* 0.46 TCGA-VS-A9V5-01 6 26156603 26156603 C T HIST1H1E 5'UTR 0.35 TCGA-VS-A9V5-01 6 27278703 27278703 C T POM121L2 Missense_Mutation p.G416D 0.28 tolerated(0.06) probably_damaging(0.936) TCGA-VS-A9V5-01 6 31557312 31557312 G C NCR3 Missense_Mutation p.Q163E 0.47 tolerated(0.07) benign(0.35) TCGA-VS-A9V5-01 6 31704151 31704151 C T CLIC1 Intron 0.48 TCGA-VS-A9V5-01 6 31721403 31721403 C T MSH5 Silent p.Y337Y 0.38 TCGA-VS-A9V5-01 6 35248845 35248845 G A ZNF76 5'UTR 0.40 TCGA-VS-A9V5-01 6 36334268 36334268 G T ETV7 3'UTR 0.22 TCGA-VS-A9V5-01 6 38899592 38899592 A C DNAH8 Missense_Mutation p.K3543N 0.35 probably_damaging(1) TCGA-VS-A9V5-01 6 43172209 43172209 G A CUL9 Missense_Mutation p.R1424H 0.29 deleterious(0.01) benign(0.077) TCGA-VS-A9V5-01 6 43483648 43483648 C T YIPF3 Silent p.L89L 0.31 TCGA-VS-A9V5-01 6 51920455 51920455 C T PKHD1 Missense_Mutation p.R589H 0.40 tolerated(1) benign(0.001) TCGA-VS-A9V5-01 6 73843195 73843195 G A KCNQ5 Silent p.Q452Q 0.42 TCGA-VS-A9V5-01 6 75964996 75964996 G A TMEM30A 3'UTR 0.34 TCGA-VS-A9V5-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.48 deleterious(0) possibly_damaging(0.79) TCGA-VS-A9V5-01 7 100175879 100175879 G C LRCH4 Missense_Mutation p.P284R 0.45 tolerated(0.12) probably_damaging(0.972) TCGA-VS-A9V5-01 7 101844929 101844929 C T CUX1 Silent p.L795L 0.46 TCGA-VS-A9V5-01 7 112407118 112407118 G C TMEM168 3'UTR 0.41 TCGA-VS-A9V5-01 7 112407200 112407200 A C TMEM168 3'UTR 0.39 TCGA-VS-A9V5-01 7 143701326 143701326 C T OR6B1 Silent p.P79P 0.43 TCGA-VS-A9V5-01 7 151891154 151891154 G A KMT2C Nonsense_Mutation p.Q1534* 0.40 TCGA-VS-A9V5-01 7 151962208 151962208 G C KMT2C Missense_Mutation p.H367D 0.12 probably_damaging(0.997) TCGA-VS-A9V5-01 7 1519981 1519981 T A INTS1 Missense_Mutation p.E1349V 0.39 deleterious(0.03) benign(0.028) TCGA-VS-A9V5-01 7 31378150 31378150 C A NEUROD6 Nonsense_Mutation p.E245* 0.20 TCGA-VS-A9V5-01 7 77649105 77649105 C T MAGI2 Missense_Mutation p.E1299K 0.29 tolerated(0.23) possibly_damaging(0.899) TCGA-VS-A9V5-01 7 825336 825336 A T HEATR2 3'UTR 0.44 TCGA-VS-A9V5-01 7 86781891 86781891 C T DMTF1 5'UTR 0.44 TCGA-VS-A9V5-01 7 89859307 89859307 C T STEAP2 Missense_Mutation p.S381L 0.39 deleterious(0) probably_damaging(0.999) TCGA-VS-A9V5-01 8 101252724 101252724 C A SPAG1 Missense_Mutation p.P792T 0.33 tolerated(0.6) benign(0.008) TCGA-VS-A9V5-01 8 124054479 124054479 G A DERL1 5'UTR 0.32 TCGA-VS-A9V5-01 8 144940743 144940743 C T EPPK1 Missense_Mutation p.A2227T 0.07 probably_damaging(0.987) TCGA-VS-A9V5-01 8 145616087 145616087 C T ADCK5 Missense_Mutation p.A125V 0.34 tolerated(0.1) benign(0.158) TCGA-VS-A9V5-01 8 145626384 145626384 C T CPSF1 Missense_Mutation p.R158Q 0.28 tolerated(0.19) benign(0.015) TCGA-VS-A9V5-01 8 18391853 18391853 C T PSD3 3'UTR 0.41 TCGA-VS-A9V5-01 8 29952919 29952919 G A LEPROTL1 5'Flank 0.76 TCGA-VS-A9V5-01 8 87755799 87755799 C T CNGB3 Silent p.E19E 0.34 TCGA-VS-A9V5-01 9 104133411 104133411 C G BAAT Missense_Mutation p.L92F 0.47 deleterious(0.02) benign(0.111) TCGA-VS-A9V5-01 9 116171051 116171051 C T POLE3 3'UTR 0.43 TCGA-VS-A9V5-01 9 116172675 116172675 C G POLE3 5'UTR 0.26 TCGA-VS-A9V5-01 9 124064405 124064405 G C GSN Silent p.L103L 0.23 TCGA-VS-A9V5-01 9 130939855 130939855 G C CIZ1 Missense_Mutation p.S603C 0.33 tolerated(0.4) benign(0.005) TCGA-VS-A9V5-01 9 132637151 132637151 G T USP20 Missense_Mutation p.Q655H 0.36 tolerated(0.12) benign(0.118) TCGA-VS-A9V5-01 9 136226921 136226921 C T SURF2 Missense_Mutation p.R145C 0.33 benign(0.018) TCGA-VS-A9V5-01 9 136635523 136635523 G A VAV2 Missense_Mutation p.S775F 0.40 tolerated(0.18) benign(0.238) TCGA-VS-A9V5-01 9 137734836 137734836 G C COL5A1 3'UTR 0.34 TCGA-VS-A9V5-01 9 14746948 14746948 G A FREM1 Silent p.A2037A 0.31 TCGA-VS-A9V5-01 9 73150763 73150763 C T TRPM3 3'UTR 0.30 TCGA-VS-A9V5-01 X 100510239 100510239 G A DRP2 Splice_Site p.X749_splice 0.23 TCGA-VS-A9V5-01 X 125684093 125684093 T A DCAF12L1 3'UTR 0.17 TCGA-VS-A9V5-01 X 128914084 128914084 G A SASH3 Missense_Mutation p.R4H 0.35 deleterious(0) possibly_damaging(0.877) TCGA-VS-A9V5-01 X 128939964 128939964 T C ZDHHC9 3'UTR 0.56 TCGA-VS-A9V5-01 X 132458509 132458509 C A GPC4 Silent p.V125V 0.38 TCGA-VS-A9V5-01 X 1508600 1508600 C G SLC25A6 Missense_Mutation p.Q44H 0.35 deleterious(0.03) benign(0.238) TCGA-VS-A9V5-01 X 153595874 153595874 G A FLNA Silent p.D253D 0.30 TCGA-VS-A9V5-01 X 30848822 30848822 T C TAB3 3'UTR 0.41 TCGA-VS-A9V5-01 X 46739802 46739802 G A RP2 3'UTR 0.49 TCGA-VS-A9V5-01 X 49082914 49082914 C A CACNA1F Nonsense_Mutation p.E485* 0.42 TCGA-VS-A9V5-01 X 70836462 70836462 G C CXCR3 Missense_Mutation p.A334G 0.18 tolerated(0.36) benign(0.005) TCGA-VS-A9V5-01 X 71802394 71802394 C T PHKA1 Missense_Mutation p.V1118I 0.29 tolerated(0.85) benign(0.338) TCGA-VS-A9V5-01 X 77223905 77223905 C T PGAM4 3'UTR 0.24 TCGA-VS-AA62-01 10 104574372 104574372 G A WBP1L 3'UTR 0.28 TCGA-VS-AA62-01 10 112839472 112839472 C T ADRA2A 3'UTR 0.10 TCGA-VS-AA62-01 10 11503122 11503122 G C USP6NL 3'UTR 0.30 TCGA-VS-AA62-01 10 129881540 129881540 G C PTPRE 3'UTR 0.20 TCGA-VS-AA62-01 10 24802361 24802361 G C KIAA1217 Missense_Mutation p.L725F 0.31 deleterious(0) probably_damaging(0.999) TCGA-VS-AA62-01 10 48372295 48372295 G A ZNF488 3'UTR 0.15 TCGA-VS-AA62-01 10 48372657 48372657 C T ZNF488 3'UTR 0.12 TCGA-VS-AA62-01 10 71812718 71812718 G C H2AFY2 5'UTR 0.27 TCGA-VS-AA62-01 10 72635258 72635258 G A SGPL1 Silent p.L466L 0.15 TCGA-VS-AA62-01 10 95518086 95518086 C T LGI1 Missense_Mutation p.P62L 0.23 deleterious(0.02) probably_damaging(1) TCGA-VS-AA62-01 10 97916458 97916458 A G ZNF518A RNA 0.16 TCGA-VS-AA62-01 10 99968679 99968679 C G R3HCC1L Missense_Mutation p.P270A 0.17 tolerated(0.15) benign(0.228) TCGA-VS-AA62-01 11 102663441 102663441 G C MMP1 Missense_Mutation p.P310A 0.30 tolerated(0.69) benign(0.001) TCGA-VS-AA62-01 11 110036250 110036250 G C ZC3H12C Missense_Mutation p.E814Q 0.14 tolerated(0.07) possibly_damaging(0.793) TCGA-VS-AA62-01 11 133902359 133902359 G A RP11-713P17.3 RNA 0.18 TCGA-VS-AA62-01 11 18731210 18731210 C A IGSF22 Missense_Mutation p.D908Y 0.19 deleterious(0.02) benign(0.073) TCGA-VS-AA62-01 11 24753697 24753697 G A LUZP2 Missense_Mutation p.D72N 0.09 tolerated(0.08) probably_damaging(0.993) TCGA-VS-AA62-01 11 64699238 64699238 G C PPP2R5B Missense_Mutation p.E338D 0.09 deleterious(0) probably_damaging(0.932) TCGA-VS-AA62-01 11 66001637 66001637 C T PACS1 Silent p.V676V 0.15 TCGA-VS-AA62-01 11 6736958 6736958 C G GVINP1 RNA 0.16 TCGA-VS-AA62-01 12 120652763 120652763 G C PXN Missense_Mutation p.H395Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-VS-AA62-01 12 125397444 125397444 C G UBC Missense_Mutation p.E292Q 0.18 deleterious(0.02) probably_damaging(0.989) TCGA-VS-AA62-01 12 125398257 125398257 C T UBC Missense_Mutation p.D21N 0.13 deleterious(0) possibly_damaging(0.842) TCGA-VS-AA62-01 12 34179131 34179131 C T ALG10 Nonsense_Mutation p.Q235* 0.10 TCGA-VS-AA62-01 12 52941972 52941972 C G KRT71 Missense_Mutation p.K314N 0.07 deleterious(0) possibly_damaging(0.845) TCGA-VS-AA62-01 13 27255327 27255327 G C WASF3 Missense_Mutation p.E285Q 0.07 tolerated(0.25) possibly_damaging(0.493) TCGA-VS-AA62-01 13 32954020 32954020 G A BRCA2 Silent p.A3029A 0.12 TCGA-VS-AA62-01 13 96675946 96675946 G A UGGT2 Silent p.I103I 0.17 TCGA-VS-AA62-01 14 105962230 105962230 G A C14orf80 Intron 0.15 TCGA-VS-AA62-01 14 22962934 22962934 G A TRAJ45 Missense_Mutation p.G9R 0.35 unknown(0) TCGA-VS-AA62-01 14 59787285 59787285 G A DAAM1 Silent p.L141L 0.15 TCGA-VS-AA62-01 14 68157855 68157855 A - RDH11 Splice_Site p.X152_splice 0.17 TCGA-VS-AA62-01 14 77935573 77935573 A G AHSA1 Missense_Mutation p.Y333C 0.17 tolerated(0.09) probably_damaging(0.985) TCGA-VS-AA62-01 14 92480862 92480862 G C TRIP11 Missense_Mutation p.Q295E 0.15 tolerated(0.07) benign(0.008) TCGA-VS-AA62-01 15 25924094 25924094 C T ATP10A 3'UTR 0.19 TCGA-VS-AA62-01 15 41625174 41625174 G A NUSAP1 Missense_Mutation p.E7K 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-VS-AA62-01 15 41870695 41870695 G C TYRO3 3'UTR 0.08 TCGA-VS-AA62-01 15 45669010 45669010 C T GATM Missense_Mutation p.R26Q 0.27 tolerated_low_confidence(0.24) benign(0.008) TCGA-VS-AA62-01 15 65702517 65702517 G A IGDCC4 Missense_Mutation p.R188W 0.30 deleterious(0) probably_damaging(1) TCGA-VS-AA62-01 15 74753444 74753444 C G UBL7 5'Flank 0.07 TCGA-VS-AA62-01 15 74753500 74753500 C G UBL7 5'Flank 0.11 TCGA-VS-AA62-01 15 99673719 99673719 C G SYNM 3'UTR 0.12 TCGA-VS-AA62-01 16 1358710 1358710 G A UBE2I 5'Flank 0.15 TCGA-VS-AA62-01 16 31371066 31371066 C G ITGAX Nonsense_Mutation p.S159* 0.32 TCGA-VS-AA62-01 16 4015261 4015261 G C ADCY9 3'UTR 0.11 TCGA-VS-AA62-01 16 67919567 67919567 G C NRN1L Intron 0.09 TCGA-VS-AA62-01 16 85127212 85127212 G C KIAA0513 3'UTR 0.12 TCGA-VS-AA62-01 17 27000462 27000462 G C SUPT6H Missense_Mutation p.E15Q 0.17 deleterious_low_confidence(0.02) unknown(0) TCGA-VS-AA62-01 17 40474420 40474420 C A STAT3 Missense_Mutation p.D661Y 0.14 deleterious(0.03) probably_damaging(0.979) TCGA-VS-AA62-01 17 49041975 49041975 G A SPAG9 3'UTR 0.10 TCGA-VS-AA62-01 17 57941065 57941065 C T TUBD1 Missense_Mutation p.D407N 0.14 tolerated(0.36) benign(0.034) TCGA-VS-AA62-01 17 72769777 72769777 G C NAT9 Missense_Mutation p.S43W 0.32 deleterious(0) probably_damaging(1) TCGA-VS-AA62-01 17 8139199 8139199 G A CTC1 Nonsense_Mutation p.Q386* 0.22 TCGA-VS-AA62-01 17 8140750 8140750 G A CTC1 Silent p.F245F 0.15 TCGA-VS-AA62-01 18 21106688 21106688 G T C18orf8 Missense_Mutation p.R383I 0.21 deleterious(0) probably_damaging(0.999) TCGA-VS-AA62-01 18 2707564 2707564 C T SMCHD1 Silent p.L689L 0.22 TCGA-VS-AA62-01 18 74607206 74607206 C T ZNF236 Missense_Mutation p.S550F 0.12 deleterious(0) probably_damaging(0.994) TCGA-VS-AA62-01 18 9513238 9513238 G A RALBP1 Silent p.E65E 0.15 TCGA-VS-AA62-01 19 10249252 10249252 C G DNMT1 Missense_Mutation p.R1326S 0.18 deleterious(0) probably_damaging(0.924) TCGA-VS-AA62-01 19 10800322 10800322 G C ILF3 3'UTR 0.14 TCGA-VS-AA62-01 19 1107709 1107709 G A SBNO2 3'UTR 0.20 TCGA-VS-AA62-01 19 1925794 1925794 C G SCAMP4 3'UTR 0.12 TCGA-VS-AA62-01 19 2426048 2426048 G A TMPRSS9 Missense_Mutation p.A1048T 0.17 deleterious(0.02) probably_damaging(0.96) TCGA-VS-AA62-01 19 35532796 35532796 G A HPN 5'UTR 0.11 TCGA-VS-AA62-01 19 38848938 38848938 C T CATSPERG Missense_Mutation p.L446F 0.16 deleterious(0.04) possibly_damaging(0.765) TCGA-VS-AA62-01 19 42490290 42490290 G A ATP1A3 Missense_Mutation p.S163F 0.15 deleterious(0) probably_damaging(1) TCGA-VS-AA62-01 19 50411631 50411631 G C NUP62 Silent p.L478L 0.21 TCGA-VS-AA62-01 19 50472997 50472997 G A SIGLEC16 Intron 0.15 TCGA-VS-AA62-01 19 50826935 50826935 G C KCNC3 Missense_Mutation p.F425L 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-VS-AA62-01 19 50827286 50827286 G A KCNC3 Silent p.C308C 0.18 TCGA-VS-AA62-01 19 58189582 58189582 G A ZSCAN4 Missense_Mutation p.R204Q 0.19 tolerated(1) benign(0) TCGA-VS-AA62-01 19 58826148 58826148 G A ERVK3-1 RNA 0.15 TCGA-VS-AA62-01 1 146684911 146684911 G C FMO5 Missense_Mutation p.H151D 0.21 deleterious(0) probably_damaging(0.997) TCGA-VS-AA62-01 1 160129245 160129245 C T ATP1A4 Missense_Mutation p.S236F 0.22 deleterious(0.01) benign(0.164) TCGA-VS-AA62-01 1 160210050 160210050 C G DCAF8 Missense_Mutation p.D54H 0.16 tolerated(0.05) benign(0.332) TCGA-VS-AA62-01 1 161496218 161496218 G C HSPA6 Missense_Mutation p.E590D 0.09 tolerated_low_confidence(0.21) benign(0.029) TCGA-VS-AA62-01 1 16889978 16889978 C T NBPF1 3'UTR 0.14 TCGA-VS-AA62-01 1 180167275 180167275 C T QSOX1 3'UTR 0.21 TCGA-VS-AA62-01 1 198509767 198509767 G C ATP6V1G3 Missense_Mutation p.S5C 0.16 deleterious(0) probably_damaging(0.961) TCGA-VS-AA62-01 1 200573018 200573018 C A KIF14 Silent p.L604L 0.13 TCGA-VS-AA62-01 1 202894125 202894125 C G KLHL12 Missense_Mutation p.D56H 0.20 tolerated(0.05) possibly_damaging(0.896) TCGA-VS-AA62-01 1 22419215 22419215 C G CDC42 3'UTR 0.24 TCGA-VS-AA62-01 1 36520586 36520586 G A AGO3 Missense_Mutation p.D772N 0.32 deleterious(0) probably_damaging(1) TCGA-VS-AA62-01 1 43393453 43393453 C G SLC2A1 Silent p.L367L 0.25 TCGA-VS-AA62-01 1 84356011 84356011 C G TTLL7 Missense_Mutation p.D788H 0.14 deleterious(0.02) benign(0.438) TCGA-VS-AA62-01 1 89446037 89446037 C G RBMXL1 3'UTR 0.07 TCGA-VS-AA62-01 20 33862241 33862241 C G MMP24 Missense_Mutation p.I589M 0.11 deleterious(0.05) possibly_damaging(0.899) TCGA-VS-AA62-01 20 51873000 51873000 G A TSHZ2 Silent p.R1001R 0.23 TCGA-VS-AA62-01 20 57287574 57287574 G C NPEPL1 Missense_Mutation p.E314Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-VS-AA62-01 20 58547121 58547121 G A CDH26 Silent p.E112E 0.16 TCGA-VS-AA62-01 20 61907878 61907878 G C ARFGAP1 Missense_Mutation p.E73Q 0.22 deleterious(0) benign(0.125) TCGA-VS-AA62-01 20 61937282 61937282 C G COL20A1 Silent p.L129L 0.13 TCGA-VS-AA62-01 22 39123228 39123228 C T GTPBP1 Missense_Mutation p.S471L 0.07 deleterious(0.02) possibly_damaging(0.853) TCGA-VS-AA62-01 22 45130963 45130963 C T PRR5 Silent p.V227V 0.19 TCGA-VS-AA62-01 2 120358909 120358909 C T PCDP1 Silent p.Y249Y 0.10 TCGA-VS-AA62-01 2 167159684 167159684 G T SCN9A Missense_Mutation p.H273N 0.21 tolerated(1) benign(0.003) TCGA-VS-AA62-01 2 168102225 168102225 C A XIRP2 Silent p.V1441V 0.16 TCGA-VS-AA62-01 2 172864846 172864846 G C METAP1D 5'UTR 0.23 TCGA-VS-AA62-01 2 201687552 201687552 G C BZW1 3'Flank 0.24 TCGA-VS-AA62-01 2 201687714 201687714 G C BZW1 3'Flank 0.10 TCGA-VS-AA62-01 2 242046792 242046792 C G PASK Missense_Mutation p.E1271Q 0.12 deleterious(0.02) possibly_damaging(0.787) TCGA-VS-AA62-01 2 242170177 242170177 G C HDLBP Missense_Mutation p.F1157L 0.17 deleterious(0.01) benign(0.423) TCGA-VS-AA62-01 2 33813423 33813423 G C FAM98A Missense_Mutation p.F167L 0.08 tolerated(0.94) benign(0.032) TCGA-VS-AA62-01 2 44021698 44021698 G C DYNC2LI1 Silent p.V141V 0.23 TCGA-VS-AA62-01 2 48950766 48950766 G A LHCGR Silent p.F151F 0.08 TCGA-VS-AA62-01 2 71036942 71036942 G A CLEC4F Silent p.L529L 0.19 TCGA-VS-AA62-01 2 71360458 71360458 G C MPHOSPH10 Missense_Mutation p.D174H 0.08 deleterious(0) probably_damaging(0.993) TCGA-VS-AA62-01 2 71360581 71360581 G C MPHOSPH10 Missense_Mutation p.E215Q 0.09 tolerated(0.06) probably_damaging(0.957) TCGA-VS-AA62-01 3 121980562 121980562 G A CASR Missense_Mutation p.R227Q 0.29 tolerated(0.73) possibly_damaging(0.756) TCGA-VS-AA62-01 3 152883521 152883521 C G RAP2B 3'UTR 0.25 TCGA-VS-AA62-01 3 164796246 164796246 C T SI 5'UTR 0.26 TCGA-VS-AA62-01 3 191047393 191047393 C T CCDC50 5'UTR 0.33 TCGA-VS-AA62-01 3 195711445 195711445 C G SDHAP1 RNA 0.09 TCGA-VS-AA62-01 3 25677609 25677609 C G TOP2B Missense_Mutation p.E219Q 0.15 deleterious(0.02) benign(0.059) TCGA-VS-AA62-01 4 154542842 154542842 G A KIAA0922 Missense_Mutation p.E1234K 0.07 deleterious(0) probably_damaging(0.952) TCGA-VS-AA62-01 4 95199790 95199790 G C SMARCAD1 Missense_Mutation p.K734N 0.19 deleterious(0) probably_damaging(1) TCGA-VS-AA62-01 5 112151253 112151253 C G APC Missense_Mutation p.S299C 0.11 benign(0.097) TCGA-VS-AA62-01 5 118728636 118728636 G A TNFAIP8 Missense_Mutation p.E53K 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-VS-AA62-01 5 137735548 137735548 G C KDM3B Splice_Site p.X1016_splice 0.22 TCGA-VS-AA62-01 5 141391677 141391677 G A GNPDA1 5'UTR 0.24 TCGA-VS-AA62-01 5 149754190 149754190 C T TCOF1 Missense_Mutation p.S365L 0.23 tolerated(0.23) benign(0.086) TCGA-VS-AA62-01 5 150175389 150175389 G A AC010441.1 3'UTR 0.17 TCGA-VS-AA62-01 5 175992698 175992698 C G CDHR2 Missense_Mutation p.F26L 0.12 deleterious(0) possibly_damaging(0.78) TCGA-VS-AA62-01 5 56558787 56558787 G C GPBP1 3'UTR 0.22 TCGA-VS-AA62-01 5 71490170 71490170 G C MAP1B Missense_Mutation p.E330Q 0.12 unknown(0) TCGA-VS-AA62-01 5 78610648 78610648 C T JMY Missense_Mutation p.T878I 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-VS-AA62-01 5 93076901 93076901 C T POU5F2 Silent p.L123L 0.16 TCGA-VS-AA62-01 6 167550206 167550206 G A CCR6 Missense_Mutation p.R163H 0.14 tolerated(0.77) benign(0.004) TCGA-VS-AA62-01 6 17688723 17688723 C G NUP153 Missense_Mutation p.E80Q 0.09 tolerated(0.14) probably_damaging(0.937) TCGA-VS-AA62-01 6 30313297 30313297 G A RPP21 Missense_Mutation p.R71Q 0.08 deleterious(0.01) possibly_damaging(0.687) TCGA-VS-AA62-01 6 39073408 39073408 C T SAYSD1 Missense_Mutation p.E118K 0.14 deleterious(0) probably_damaging(0.913) TCGA-VS-AA62-01 6 51524480 51524480 G A PKHD1 Missense_Mutation p.R3482C 0.08 deleterious(0) probably_damaging(0.912) TCGA-VS-AA62-01 6 73111447 73111447 C T RIMS1 3'Flank 0.18 TCGA-VS-AA62-01 6 87967732 87967732 C T ZNF292 Missense_Mutation p.S1462L 0.26 deleterious(0.02) benign(0.079) TCGA-VS-AA62-01 7 102920523 102920523 G A DPY19L2P2 RNA 0.13 TCGA-VS-AA62-01 7 106710753 106710753 G A PRKAR2B Missense_Mutation p.R112H 0.10 deleterious(0) probably_damaging(0.952) TCGA-VS-AA62-01 7 127975696 127975696 G C RBM28 Missense_Mutation p.H283D 0.06 tolerated(0.52) benign(0.001) TCGA-VS-AA62-01 7 47849136 47849136 G C PKD1L1 Missense_Mutation p.Q2541E 0.17 tolerated(0.05) benign(0.429) TCGA-VS-AA62-01 7 47849158 47849158 G A PKD1L1 Silent p.L2533L 0.19 TCGA-VS-AA62-01 7 94180706 94180706 A T CASD1 Missense_Mutation p.Q624H 0.09 tolerated(0.15) probably_damaging(0.979) TCGA-VS-AA62-01 7 99669756 99669756 T C ZNF3 Silent p.Q117Q 0.17 TCGA-VS-AA62-01 8 124262119 124262119 T A ZHX1 3'UTR 0.09 TCGA-VS-AA62-01 8 125563157 125563157 C T MTSS1 3'UTR 0.10 TCGA-VS-AA62-01 8 135614641 135614641 C T ZFAT Missense_Mutation p.A441T 0.14 tolerated(0.07) possibly_damaging(0.849) TCGA-VS-AA62-01 8 1655997 1655997 G C DLGAP2 3'UTR 0.10 TCGA-VS-AA62-01 8 18387263 18387263 C T PSD3 3'UTR 0.12 TCGA-VS-AA62-01 8 25158093 25158093 G A DOCK5 Missense_Mutation p.E256K 0.19 deleterious(0) possibly_damaging(0.871) TCGA-VS-AA62-01 8 37821122 37821122 G C ADRB3 3'UTR 0.16 TCGA-VS-AA62-01 8 61655192 61655192 G A CHD7 Missense_Mutation p.A401T 0.14 possibly_damaging(0.483) TCGA-VS-AA62-01 8 69020350 69020350 C G PREX2 Missense_Mutation p.R908G 0.17 tolerated(0.21) probably_damaging(0.991) TCGA-VS-AA62-01 9 104335109 104335109 C T GRIN3A 3'UTR 0.08 TCGA-VS-AA62-01 9 111812599 111812599 G C TMEM245 Missense_Mutation p.S696C 0.10 tolerated(0.05) probably_damaging(0.951) TCGA-VS-AA62-01 9 131036239 131036239 G C GOLGA2 Missense_Mutation p.Q33E 0.17 tolerated(0.09) probably_damaging(0.99) TCGA-VS-AA62-01 9 88943347 88943347 C T ZCCHC6 Missense_Mutation p.V506I 0.22 tolerated(0.46) benign(0.001) TCGA-VS-AA62-01 X 12939421 12939421 C T TLR8 Silent p.S754S 0.18 TCGA-VS-AA62-01 X 134990268 134990268 C G SAGE1 Missense_Mutation p.L394V 0.10 tolerated(1) benign(0) TCGA-VS-AA62-01 X 151909222 151909222 C T CSAG1 3'UTR 0.11 TCGA-VS-AA62-01 X 151909267 151909267 C G CSAG1 3'UTR 0.08 TCGA-VS-AA62-01 X 40522239 40522239 C G MED14 Missense_Mutation p.E1208Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-VS-AA62-01 X 53964568 53964568 G C PHF8 3'UTR 0.33 TCGA-VS-AA62-01 X 69550072 69550072 G C KIF4A Missense_Mutation p.E321Q 0.09 deleterious(0) possibly_damaging(0.861) TCGA-VS-AA62-01 X 77150858 77150858 G A MAGT1 Missense_Mutation p.A49V 0.19 tolerated(0.36) benign(0.011) TCGA-VS-AA62-01 X 85403914 85403914 T C DACH2 Missense_Mutation p.L97P 0.07 deleterious(0) probably_damaging(0.998) TCGA-WL-A834-01 10 104459241 104459241 G C ARL3 Missense_Mutation p.F51L 0.42 deleterious(0) probably_damaging(1) TCGA-WL-A834-01 10 115973798 115973798 G A TDRD1 Missense_Mutation p.D713N 0.40 tolerated(0.41) probably_damaging(0.981) TCGA-WL-A834-01 10 35929095 35929095 C A FZD8 Missense_Mutation p.W421C 0.43 deleterious(0) probably_damaging(0.997) TCGA-WL-A834-01 10 5925012 5925012 C T ANKRD16 Missense_Mutation p.R269K 0.52 tolerated(0.21) benign(0.042) TCGA-WL-A834-01 10 7608295 7608295 C T ITIH5 Missense_Mutation p.R742H 0.41 tolerated(0.27) benign(0.008) TCGA-WL-A834-01 10 79397289 79397289 C T KCNMA1 Missense_Mutation p.A38T 0.26 deleterious_low_confidence(0) benign(0.115) TCGA-WL-A834-01 10 86131272 86131272 G A CCSER2 Missense_Mutation p.G155D 0.37 deleterious(0.02) probably_damaging(0.973) TCGA-WL-A834-01 11 123909424 123909424 G C OR10G7 Missense_Mutation p.S95R 0.10 deleterious(0) benign(0.236) TCGA-WL-A834-01 11 40136562 40136562 C T LRRC4C Missense_Mutation p.M427I 0.48 tolerated(0.11) benign(0.001) TCGA-WL-A834-01 11 486963 486963 C G PTDSS2 Missense_Mutation p.L154V 0.05 tolerated(0.06) possibly_damaging(0.702) TCGA-WL-A834-01 11 59860966 59860966 T C MS4A2 Missense_Mutation p.Y158H 0.11 deleterious(0.01) benign(0.259) TCGA-WL-A834-01 11 61560156 61560156 G T FEN1 5'UTR 0.50 TCGA-WL-A834-01 11 62289056 62289056 G C AHNAK Missense_Mutation p.S4278C 0.41 probably_damaging(0.959) TCGA-WL-A834-01 11 6566322 6566322 C T DNHD1 Nonsense_Mutation p.R1385* 0.50 TCGA-WL-A834-01 12 109631483 109631483 G A ACACB Silent p.L810L 0.35 TCGA-WL-A834-01 12 32140176 32140176 C G KIAA1551 Nonsense_Mutation p.S1669* 0.37 TCGA-WL-A834-01 12 4919125 4919125 G A KCNA6 5'UTR 0.21 TCGA-WL-A834-01 12 49854733 49854733 C G SPATS2 5'UTR 0.27 TCGA-WL-A834-01 12 71029767 71029767 C T PTPRB Silent p.R45R 0.20 TCGA-WL-A834-01 13 30091325 30091325 C T SLC7A1 Missense_Mutation p.V545I 0.62 tolerated(1) benign(0.001) TCGA-WL-A834-01 14 91976004 91976004 G A SMEK1 5'UTR 0.50 TCGA-WL-A834-01 15 102346506 102346506 T G OR4F6 Missense_Mutation p.L195W 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-WL-A834-01 15 31795972 31795972 C T OTUD7A Missense_Mutation p.V308I 0.77 deleterious(0) probably_damaging(0.997) TCGA-WL-A834-01 15 34047363 34047363 G C RYR3 Missense_Mutation p.E2833Q 0.89 benign(0.098) TCGA-WL-A834-01 15 42822002 42822002 A G SNAP23 Silent p.K185K 0.67 TCGA-WL-A834-01 15 74426565 74426565 G A ISLR2 Silent p.A490A 0.46 TCGA-WL-A834-01 15 76192742 76192742 A G UBE2Q2 3'UTR 0.33 TCGA-WL-A834-01 15 78473179 78473179 C T ACSBG1 Missense_Mutation p.A391T 0.12 tolerated(0.08) probably_damaging(0.973) TCGA-WL-A834-01 15 85411341 85411341 G A ALPK3 Splice_Site p.X1793_splice 0.74 TCGA-WL-A834-01 16 23486311 23486311 C G GGA2 Missense_Mutation p.W455S 0.38 tolerated(0.46) benign(0.044) TCGA-WL-A834-01 16 30934304 30934304 G A FBXL19 5'Flank 0.72 TCGA-WL-A834-01 16 64980872 64980877 ATAGAA - CDH11 3'UTR 0.29 TCGA-WL-A834-01 16 67942625 67942625 C T PSKH1 5'UTR 0.34 TCGA-WL-A834-01 16 68160513 68160513 G T NFATC3 Missense_Mutation p.K467N 0.34 deleterious(0) probably_damaging(1) TCGA-WL-A834-01 16 77775505 77775505 G T NUDT7 Silent p.V125V 0.38 TCGA-WL-A834-01 17 1028745 1028745 G C ABR Intron 0.36 TCGA-WL-A834-01 17 10535838 10535838 C T MYH3 Silent p.A1637A 0.38 TCGA-WL-A834-01 17 30814673 30814673 G A CDK5R1 Missense_Mutation p.R12Q 0.38 deleterious(0.04) benign(0.177) TCGA-WL-A834-01 17 36885757 36885757 G T MLLT6 3'UTR 0.62 TCGA-WL-A834-01 17 40823016 40823016 C G PLEKHH3 Missense_Mutation p.E473Q 0.23 deleterious(0) unknown(0) TCGA-WL-A834-01 17 4088126 4088126 G T ANKFY1 Silent p.I604I 0.42 TCGA-WL-A834-01 17 4389616 4389616 G C SPNS3 Missense_Mutation p.G425R 0.38 deleterious(0) probably_damaging(0.999) TCGA-WL-A834-01 17 60107314 60107314 G C MED13 Missense_Mutation p.S357C 0.55 deleterious(0.05) possibly_damaging(0.705) TCGA-WL-A834-01 17 62080232 62080232 G A ICAM2 Silent p.L235L 0.43 TCGA-WL-A834-01 17 62856867 62856867 C G LRRC37A3 Missense_Mutation p.D1133H 0.37 deleterious(0) possibly_damaging(0.496) TCGA-WL-A834-01 17 72469850 72469850 C T CD300A Silent p.N72N 0.48 TCGA-WL-A834-01 17 7406444 7406444 C T POLR2A Missense_Mutation p.R921C 0.50 benign(0.081) TCGA-WL-A834-01 17 80869633 80869633 G - TBCD Splice_Site p.X670_splice 0.24 TCGA-WL-A834-01 18 18571173 18571173 G C ROCK1 Missense_Mutation p.Q703E 0.39 tolerated(1) benign(0.002) TCGA-WL-A834-01 18 61074678 61074678 C T VPS4B Silent p.Q117Q 0.35 TCGA-WL-A834-01 19 11130308 11130308 G A SMARCA4 Silent p.R849R 0.15 TCGA-WL-A834-01 19 14000393 14000393 C T C19orf57 Missense_Mutation p.G426R 0.50 tolerated(0.39) probably_damaging(0.991) TCGA-WL-A834-01 19 16606596 16606596 C A CALR3 Silent p.S53S 0.52 TCGA-WL-A834-01 19 3885794 3885794 T C ATCAY Missense_Mutation p.M10T 0.15 deleterious(0.04) possibly_damaging(0.731) TCGA-WL-A834-01 19 50363362 50363362 C T PTOV1 Silent p.V387V 0.26 TCGA-WL-A834-01 19 51020885 51020885 G T LRRC4B Missense_Mutation p.H695Q 0.47 tolerated_low_confidence(0.33) benign(0.018) TCGA-WL-A834-01 19 56320318 56320318 C T NLRP11 Missense_Mutation p.R553Q 0.27 tolerated(1) benign(0) TCGA-WL-A834-01 19 57166487 57166487 C T SMIM17 Missense_Mutation p.S88L 0.45 deleterious_low_confidence(0.03) benign(0.275) TCGA-WL-A834-01 19 7114762 7114762 G A INSR 3'Flank 0.41 TCGA-WL-A834-01 19 727657 727657 G A PALM Missense_Mutation p.E78K 0.18 deleterious(0.01) probably_damaging(0.939) TCGA-WL-A834-01 1 100949940 100949940 C G CDC14A Missense_Mutation p.S357C 0.41 tolerated(0.07) benign(0.162) TCGA-WL-A834-01 1 108766233 108766233 G A NBPF4 3'UTR 0.38 TCGA-WL-A834-01 1 116933017 116933017 G - ATP1A1 Frame_Shift_Del p.T403Qfs*55 0.29 TCGA-WL-A834-01 1 145439808 145439808 T C TXNIP Silent p.Y118Y 0.65 TCGA-WL-A834-01 1 150783416 150783416 C T ARNT 3'UTR 0.22 TCGA-WL-A834-01 1 162354926 162354926 G A C1orf226 3'Flank 0.22 TCGA-WL-A834-01 1 162766467 162766467 G T HSD17B7 Missense_Mutation p.R111I 0.58 deleterious(0.03) possibly_damaging(0.862) TCGA-WL-A834-01 1 212180086 212180086 C T INTS7 Silent p.Q258Q 0.12 TCGA-WL-A834-01 1 216348638 216348638 C T USH2A Missense_Mutation p.C1528Y 0.72 benign(0) TCGA-WL-A834-01 1 23110978 23110978 C T EPHB2 Missense_Mutation p.R74W 0.41 deleterious(0) probably_damaging(0.992) TCGA-WL-A834-01 1 232600891 232600891 C T SIPA1L2 Missense_Mutation p.E839K 0.11 deleterious(0) probably_damaging(0.995) TCGA-WL-A834-01 1 237880502 237880502 C A RYR2 Missense_Mutation p.A3443D 0.68 benign(0.003) TCGA-WL-A834-01 1 248737420 248737420 G T OR2T34 Silent p.L213L 0.20 TCGA-WL-A834-01 1 43396313 43396313 C A SLC2A1 Missense_Mutation p.G167V 0.41 deleterious(0) probably_damaging(1) TCGA-WL-A834-01 1 6311456 6311456 G C GPR153 Silent p.L307L 0.53 TCGA-WL-A834-01 1 6311556 6311556 G A GPR153 Missense_Mutation p.S274L 0.25 deleterious(0) benign(0.328) TCGA-WL-A834-01 1 6314906 6314906 G C GPR153 Silent p.L20L 0.29 TCGA-WL-A834-01 1 66839127 66839127 C T PDE4B 3'UTR 0.44 TCGA-WL-A834-01 20 1285974 1285974 G A SNPH Missense_Mutation p.R254Q 0.38 tolerated(0.57) benign(0.05) TCGA-WL-A834-01 20 18295839 18295839 G C ZNF133 Missense_Mutation p.G114A 0.35 tolerated(0.09) benign(0.001) TCGA-WL-A834-01 20 23807092 23807092 C T CST2 Missense_Mutation p.R69Q 0.45 tolerated(0.68) benign(0.037) TCGA-WL-A834-01 20 33864123 33864123 G C MMP24 3'UTR 0.13 TCGA-WL-A834-01 20 40040787 40040787 C T CHD6 Silent p.L2416L 0.21 TCGA-WL-A834-01 20 57767394 57767394 C T ZNF831 Silent p.I440I 0.37 TCGA-WL-A834-01 21 10862953 10862953 C G IGHV1OR21-1 Missense_Mutation p.F83L 0.12 deleterious(0.02) benign(0.408) TCGA-WL-A834-01 22 17117949 17117949 G A TPTEP1 RNA 0.35 TCGA-WL-A834-01 22 48940508 48940508 G T CTA-299D3.8 Missense_Mutation p.H101N 0.24 benign(0) TCGA-WL-A834-01 2 102849420 102849420 C T IL1RL2 Intron 0.31 TCGA-WL-A834-01 2 128410029 128410029 C T GPR17 3'UTR 0.11 TCGA-WL-A834-01 2 136575262 136575262 C A LCT Missense_Mutation p.K452N 0.34 deleterious(0) probably_damaging(0.983) TCGA-WL-A834-01 2 170060692 170060692 C T LRP2 Missense_Mutation p.G2602D 0.27 benign(0.011) TCGA-WL-A834-01 2 196765060 196765060 G A DNAH7 Silent p.Y1498Y 0.24 TCGA-WL-A834-01 2 5833062 5833062 A C SOX11 Missense_Mutation p.Q70P 0.15 deleterious(0) probably_damaging(0.996) TCGA-WL-A834-01 2 71417103 71417103 C G PAIP2B Missense_Mutation p.E63Q 0.45 tolerated(0.17) possibly_damaging(0.693) TCGA-WL-A834-01 2 85657723 85657723 C A SH2D6 5'Flank 0.56 TCGA-WL-A834-01 3 11301558 11301558 A T HRH1 Missense_Mutation p.T279S 0.31 tolerated(0.73) benign(0) TCGA-WL-A834-01 3 1424826 1424826 G C CNTN6 Silent p.L789L 0.76 TCGA-WL-A834-01 3 157815142 157815142 C A SHOX2 3'UTR 0.31 TCGA-WL-A834-01 3 58110095 58110095 A G FLNB Missense_Mutation p.D1254G 0.15 deleterious(0) possibly_damaging(0.76) TCGA-WL-A834-01 3 78706263 78706263 G A ROBO1 Nonsense_Mutation p.Q867* 0.38 TCGA-WL-A834-01 4 25665934 25665934 G A SLC34A2 Missense_Mutation p.A121T 0.49 deleterious(0) probably_damaging(0.982) TCGA-WL-A834-01 4 46967233 46967233 G A GABRA4 Silent p.V296V 0.10 TCGA-WL-A834-01 4 79462120 79462120 C T FRAS1 Missense_Mutation p.R3961W 0.28 possibly_damaging(0.614) TCGA-WL-A834-01 5 112884255 112884255 G A YTHDC2 Missense_Mutation p.E505K 0.71 tolerated(0.09) benign(0.133) TCGA-WL-A834-01 5 140616083 140616083 T A PCDHB18 RNA 0.52 TCGA-WL-A834-01 5 178548700 178548700 C T ADAMTS2 Missense_Mutation p.R1047H 0.67 deleterious(0.04) possibly_damaging(0.817) TCGA-WL-A834-01 5 26885962 26885962 C A CDH9 Missense_Mutation p.G548V 0.11 tolerated(0.22) probably_damaging(0.955) TCGA-WL-A834-01 5 33457395 33457395 A G TARS Missense_Mutation p.M324V 0.72 tolerated(0.31) benign(0.309) TCGA-WL-A834-01 5 665359 665359 G A TPPP Missense_Mutation p.T173M 0.07 deleterious(0) probably_damaging(0.98) TCGA-WL-A834-01 6 125146632 125146632 T C NKAIN2 3'UTR 0.39 TCGA-WL-A834-01 6 129959716 129959716 C A ARHGAP18 Missense_Mutation p.E125D 0.14 tolerated(0.63) benign(0.02) TCGA-WL-A834-01 6 26107819 26107819 C A HIST1H1T Missense_Mutation p.R168I 0.38 deleterious(0) benign(0.445) TCGA-WL-A834-01 6 3224826 3224826 A G TUBB2B 3'UTR 0.39 TCGA-WL-A834-01 6 7572161 7572161 C G DSP Missense_Mutation p.Q664E 0.47 benign(0.113) TCGA-WL-A834-01 6 84234251 84234251 G A PRSS35 Missense_Mutation p.R364H 0.48 deleterious(0) probably_damaging(0.999) TCGA-WL-A834-01 6 96660966 96660966 G T FUT9 3'UTR 0.50 TCGA-WL-A834-01 7 107423751 107423751 C T SLC26A3 Missense_Mutation p.V340I 0.54 tolerated(1) benign(0.006) TCGA-WL-A834-01 7 130353481 130353481 C T COPG2 Missense_Mutation p.E10K 0.37 deleterious(0.02) benign(0.144) TCGA-WL-A834-01 7 147844663 147844663 G A CNTNAP2 Missense_Mutation p.D879N 0.30 deleterious(0.02) probably_damaging(0.957) TCGA-WL-A834-01 7 158476039 158476039 C T NCAPG2 Missense_Mutation p.G293R 0.34 deleterious(0) probably_damaging(1) TCGA-WL-A834-01 7 27194238 27194238 G A HOXA7 3'UTR 0.37 TCGA-WL-A834-01 7 73008680 73008680 C T MLXIPL Silent p.T788T 0.45 TCGA-WL-A834-01 7 73117813 73117813 A G STX1A Intron 0.06 TCGA-WL-A834-01 7 76021282 76021282 G A SRCRB4D Silent p.D470D 0.23 TCGA-WL-A834-01 7 77647803 77647803 C A MAGI2 3'UTR 0.31 TCGA-WL-A834-01 8 113246671 113246671 G A CSMD3 Missense_Mutation p.R3555C 0.55 deleterious(0) benign(0.276) TCGA-WL-A834-01 8 124516928 124516928 G C FBXO32 Missense_Mutation p.F298L 0.58 tolerated(0.06) possibly_damaging(0.694) TCGA-WL-A834-01 8 146156819 146156819 G A ZNF16 Missense_Mutation p.R452W 0.10 deleterious(0.04) possibly_damaging(0.901) TCGA-WL-A834-01 8 38250390 38250390 C G LETM2 Missense_Mutation p.I79M 0.26 deleterious(0.01) possibly_damaging(0.908) TCGA-WL-A834-01 8 48766714 48766714 G C PRKDC Missense_Mutation p.Q2274E 0.43 probably_damaging(0.99) TCGA-WL-A834-01 8 93026984 93026984 G A RUNX1T1 Silent p.F108F 0.46 TCGA-WL-A834-01 9 101751495 101751495 C T COL15A1 Silent p.D253D 0.32 TCGA-WL-A834-01 9 113550063 113550063 G A MUSK Silent p.Q624Q 0.28 TCGA-WL-A834-01 9 140196226 140196226 T G NRARP Missense_Mutation p.Q52P 0.31 deleterious(0.03) probably_damaging(0.954) TCGA-WL-A834-01 9 79952333 79952333 T C VPS13A Silent p.D2086D 0.37 TCGA-WL-A834-01 9 96398778 96398778 C T PHF2 Silent p.I90I 0.41 TCGA-WL-A834-01 9 97563233 97563233 G C C9orf3 Missense_Mutation p.R438P 0.44 deleterious(0) probably_damaging(0.996) TCGA-WL-A834-01 X 100667593 100667593 G A HNRNPH2 Missense_Mutation p.R206Q 0.36 tolerated(0.09) benign(0.122) TCGA-WL-A834-01 X 101572376 101572376 C T NXF2 Missense_Mutation p.H92Y 0.36 tolerated(0.14) benign(0.015) TCGA-WL-A834-01 X 108924278 108924278 C G ACSL4 Missense_Mutation p.E243Q 0.33 tolerated(0.67) benign(0.017) TCGA-WL-A834-01 X 140985330 140985330 C T MAGEC3 Intron 0.35 TCGA-WL-A834-01 X 155235748 155235748 G A IL9R Missense_Mutation p.G261D 0.32 tolerated(0.22) benign(0.248) TCGA-WL-A834-01 X 18627006 18627006 T A CDKL5 Missense_Mutation p.S674T 0.42 tolerated_low_confidence(0.14) benign(0.001) TCGA-WL-A834-01 X 18627007 18627007 C T CDKL5 Missense_Mutation p.S674F 0.42 deleterious_low_confidence(0) benign(0.008) TCGA-WL-A834-01 X 9862554 9862554 C T SHROOM2 Silent p.S202S 0.09 TCGA-XS-A8TJ-01 10 115958931 115958931 G A TDRD1 Splice_Site p.X129_splice 0.10 TCGA-XS-A8TJ-01 10 123279652 123279652 G A FGFR2 Silent p.A260A 0.07 TCGA-XS-A8TJ-01 10 135280761 135280761 C T SPRN Intron 0.08 TCGA-XS-A8TJ-01 10 13687979 13687979 G A FRMD4A 3'UTR 0.10 TCGA-XS-A8TJ-01 10 35928019 35928019 C T FZD8 3'UTR 0.12 TCGA-XS-A8TJ-01 10 99192749 99192749 C T PGAM1 3'UTR 0.10 TCGA-XS-A8TJ-01 11 1492605 1492605 G A MOB2 Missense_Mutation p.T137M 0.09 deleterious(0) probably_damaging(0.998) TCGA-XS-A8TJ-01 11 26677930 26677930 G A ANO3 Missense_Mutation p.D889N 0.11 deleterious(0) probably_damaging(1) TCGA-XS-A8TJ-01 11 56310313 56310313 T C OR5M11 Missense_Mutation p.I141V 0.18 tolerated(0.32) benign(0.021) TCGA-XS-A8TJ-01 11 61135318 61135319 TC - TMEM138 Intron 0.14 TCGA-XS-A8TJ-01 11 64510978 64510978 G A RASGRP2 Intron 0.12 TCGA-XS-A8TJ-01 11 95595193 95595193 C T MTMR2 Missense_Mutation p.R144Q 0.20 tolerated(0.08) benign(0.003) TCGA-XS-A8TJ-01 12 117287228 117287228 C T RNFT2 Missense_Mutation p.T437M 0.10 deleterious(0) possibly_damaging(0.697) TCGA-XS-A8TJ-01 12 125470648 125470648 C T DHX37 Silent p.K90K 0.13 TCGA-XS-A8TJ-01 12 40921487 40921487 T C MUC19 Intron 0.13 TCGA-XS-A8TJ-01 12 49414960 49414960 G A KMT2D 3'UTR 0.14 TCGA-XS-A8TJ-01 12 56088563 56088563 G A ITGA7 Missense_Mutation p.A736V 0.10 tolerated(0.36) benign(0.003) TCGA-XS-A8TJ-01 12 6965950 6965950 C T USP5 Missense_Mutation p.R222C 0.11 deleterious(0.01) possibly_damaging(0.907) TCGA-XS-A8TJ-01 13 108861841 108861841 C T LIG4 Silent p.E592E 0.26 TCGA-XS-A8TJ-01 13 114325862 114325862 G A GRK1 Silent p.P292P 0.13 TCGA-XS-A8TJ-01 13 52864058 52864058 G A RP11-248G5.8 RNA 0.07 TCGA-XS-A8TJ-01 13 88328205 88328205 C T SLITRK5 Missense_Mutation p.L188F 0.14 deleterious(0) probably_damaging(1) TCGA-XS-A8TJ-01 14 106054495 106054495 C T IGHA2 Missense_Mutation p.G80S 0.49 tolerated(0.27) benign(0.046) TCGA-XS-A8TJ-01 14 23596505 23596505 C TG SLC7A8 Frame_Shift_Ins p.E497Qfs*12 0.15 TCGA-XS-A8TJ-01 14 55424327 55424327 G A WDHD1 Nonsense_Mutation p.R910* 0.16 TCGA-XS-A8TJ-01 14 63841415 63841415 T G PPP2R5E 3'UTR 0.29 TCGA-XS-A8TJ-01 15 64981323 64981323 G A OAZ2 Silent p.N133N 0.18 TCGA-XS-A8TJ-01 16 2004125 2004125 G A RPL3L Missense_Mutation p.R10W 0.09 deleterious(0) probably_damaging(0.993) TCGA-XS-A8TJ-01 16 27460610 27460610 C T IL21R 3'UTR 0.23 TCGA-XS-A8TJ-01 16 67208646 67208646 G A NOL3 Silent p.L136L 0.11 TCGA-XS-A8TJ-01 16 72923737 72923737 C T ZFHX3 Missense_Mutation p.R1114Q 0.10 possibly_damaging(0.459) TCGA-XS-A8TJ-01 17 1538331 1538331 C T SCARF1 Silent p.R738R 0.10 TCGA-XS-A8TJ-01 17 17163733 17163733 G A COPS3 Missense_Mutation p.S273L 0.11 tolerated(0.24) benign(0.049) TCGA-XS-A8TJ-01 17 27903654 27903654 C T GIT1 Silent p.T431T 0.17 TCGA-XS-A8TJ-01 17 40054958 40054958 G A ACLY Missense_Mutation p.R422W 0.16 deleterious(0) possibly_damaging(0.887) TCGA-XS-A8TJ-01 17 40927475 40927475 C T VPS25 Silent p.L110L 0.12 TCGA-XS-A8TJ-01 17 40927482 40927482 C T VPS25 Nonsense_Mutation p.Q113* 0.12 TCGA-XS-A8TJ-01 17 56597838 56597838 C T SEPT4 Silent p.R477R 0.11 TCGA-XS-A8TJ-01 17 63545676 63545676 C T AXIN2 Silent p.A306A 0.16 TCGA-XS-A8TJ-01 17 64731744 64731744 G A PRKCA Silent p.P398P 0.11 TCGA-XS-A8TJ-01 17 66039402 66039402 C T KPNA2 Nonsense_Mutation p.R285* 0.08 TCGA-XS-A8TJ-01 17 78318998 78318998 A G RNF213 Missense_Mutation p.D2288G 0.15 probably_damaging(0.983) TCGA-XS-A8TJ-01 18 21053401 21053401 A C RIOK3 Missense_Mutation p.D275A 0.05 deleterious(0.05) benign(0.001) TCGA-XS-A8TJ-01 18 31802989 31802989 C T NOL4 Missense_Mutation p.A77T 0.12 tolerated(0.5) benign(0.183) TCGA-XS-A8TJ-01 19 1056966 1056966 C T ABCA7 Silent p.V1549V 0.11 TCGA-XS-A8TJ-01 19 38089307 38089307 T A ZNF540 5'UTR 0.16 TCGA-XS-A8TJ-01 19 38376109 38376109 C T WDR87 Nonsense_Mutation p.W2695* 0.17 TCGA-XS-A8TJ-01 19 42813798 42813798 G A PRR19 Missense_Mutation p.R21H 0.13 deleterious(0.03) benign(0.034) TCGA-XS-A8TJ-01 19 49299453 49299453 G A BCAT2 Intron 0.08 TCGA-XS-A8TJ-01 1 109801527 109801527 C T CELSR2 Missense_Mutation p.L1262F 0.12 deleterious(0) probably_damaging(0.917) TCGA-XS-A8TJ-01 1 145442417 145442417 T C TXNIP 3'UTR 0.13 TCGA-XS-A8TJ-01 1 15764972 15764972 C T CTRC Silent p.I4I 0.12 TCGA-XS-A8TJ-01 1 175092575 175092575 C T TNN Missense_Mutation p.T897M 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-XS-A8TJ-01 1 198498248 198498248 A C ATP6V1G3 Missense_Mutation p.M49R 0.09 tolerated(0.35) probably_damaging(0.912) TCGA-XS-A8TJ-01 1 212965126 212965126 G C TATDN3 5'Flank 0.15 TCGA-XS-A8TJ-01 1 214819303 214819303 C T CENPF Silent p.A2130A 0.25 TCGA-XS-A8TJ-01 1 216679728 216679728 A G ESRRG 3'UTR 0.28 TCGA-XS-A8TJ-01 1 22188532 22188532 G A HSPG2 Missense_Mutation p.T1606M 0.18 probably_damaging(1) TCGA-XS-A8TJ-01 1 46089459 46089459 C T CCDC17 Silent p.E41E 0.21 TCGA-XS-A8TJ-01 1 67724506 67724506 A G IL23R Missense_Mutation p.N529D 0.13 tolerated(0.65) possibly_damaging(0.801) TCGA-XS-A8TJ-01 20 16316608 16316608 C T KIF16B Missense_Mutation p.R410Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-XS-A8TJ-01 20 23666568 23666568 C T CST4 Missense_Mutation p.R130K 0.11 tolerated(1) benign(0.001) TCGA-XS-A8TJ-01 20 34054860 34054860 C T CEP250 Nonsense_Mutation p.R188* 0.17 TCGA-XS-A8TJ-01 20 36612018 36612018 A G TTI1 Missense_Mutation p.V1037A 0.08 deleterious(0) benign(0.007) TCGA-XS-A8TJ-01 20 4843503 4843503 C G SLC23A2 Silent p.L469L 0.09 TCGA-XS-A8TJ-01 20 57089803 57089803 C T APCDD1L 5'UTR 0.25 TCGA-XS-A8TJ-01 20 61473415 61473415 C T TCFL5 Missense_Mutation p.R472Q 0.07 tolerated(0.07) probably_damaging(0.99) TCGA-XS-A8TJ-01 21 40627631 40627631 C T BRWD1 Missense_Mutation p.R732H 0.11 deleterious(0) probably_damaging(0.984) TCGA-XS-A8TJ-01 21 46020974 46020974 C T KRTAP10-7 Silent p.C151C 0.09 TCGA-XS-A8TJ-01 22 17473038 17473038 C T GAB4 Missense_Mutation p.R68Q 0.20 deleterious(0.04) benign(0.002) TCGA-XS-A8TJ-01 22 24034461 24034461 C T RGL4 Intron 0.10 TCGA-XS-A8TJ-01 22 32162610 32162610 C T DEPDC5 Nonsense_Mutation p.Q107* 0.10 TCGA-XS-A8TJ-01 22 46631649 46631649 C T PPARA 3'UTR 0.46 TCGA-XS-A8TJ-01 2 198649981 198649981 C T BOLL Intron 0.41 TCGA-XS-A8TJ-01 2 201595800 201595800 G A AC007163.3 Intron 0.10 TCGA-XS-A8TJ-01 2 223536514 223536514 G A MOGAT1 Missense_Mutation p.E4K 0.43 tolerated(0.06) benign(0.265) TCGA-XS-A8TJ-01 2 239075608 239075608 G C FAM132B Missense_Mutation p.W326C 0.09 deleterious(0) possibly_damaging(0.877) TCGA-XS-A8TJ-01 2 55449555 55449555 A G CLHC1 5'UTR 0.10 TCGA-XS-A8TJ-01 2 61145620 61145620 C T REL Silent p.F244F 0.15 TCGA-XS-A8TJ-01 2 63401950 63401950 C T WDPCP Missense_Mutation p.D645N 0.10 tolerated(0.14) benign(0.037) TCGA-XS-A8TJ-01 2 74043677 74043677 C T C2orf78 Missense_Mutation p.S776F 0.12 deleterious(0) probably_damaging(0.982) TCGA-XS-A8TJ-01 2 86693596 86693596 C T KDM3A Missense_Mutation p.S370L 0.08 deleterious_low_confidence(0.03) benign(0.031) TCGA-XS-A8TJ-01 3 100364839 100364839 C T GPR128 Nonsense_Mutation p.Q333* 0.10 TCGA-XS-A8TJ-01 3 111769572 111769572 C T TMPRSS7 Missense_Mutation p.S256L 0.10 deleterious(0.03) benign(0.004) TCGA-XS-A8TJ-01 3 12195167 12195167 C T TIMP4 Missense_Mutation p.E175K 0.18 deleterious(0) probably_damaging(0.977) TCGA-XS-A8TJ-01 3 124515539 124515539 G A ITGB5 Silent p.C463C 0.10 TCGA-XS-A8TJ-01 3 13655585 13655585 C T FBLN2 Silent p.L550L 0.21 TCGA-XS-A8TJ-01 3 142681444 142681444 G A PAQR9 Silent p.F245F 0.13 TCGA-XS-A8TJ-01 3 154864984 154864984 G A MME Missense_Mutation p.D490N 0.14 tolerated(0.25) benign(0.001) TCGA-XS-A8TJ-01 3 155199791 155199791 G C PLCH1 Missense_Mutation p.L1350V 0.11 tolerated_low_confidence(0.3) benign(0.003) TCGA-XS-A8TJ-01 3 170727761 170727761 G A SLC2A2 Missense_Mutation p.S161L 0.10 deleterious(0.04) benign(0.378) TCGA-XS-A8TJ-01 3 174814913 174814913 T A NAALADL2 Nonsense_Mutation p.L126* 0.19 TCGA-XS-A8TJ-01 3 180324362 180324362 C T TTC14 Silent p.L381L 0.06 TCGA-XS-A8TJ-01 3 182788816 182788816 C T MCCC1 Missense_Mutation p.M244I 0.06 tolerated(0.05) possibly_damaging(0.58) TCGA-XS-A8TJ-01 3 182897412 182897412 C T MCF2L2 Silent p.R1058R 0.20 TCGA-XS-A8TJ-01 3 195453028 195453028 C T MUC20 Silent p.L518L 0.06 TCGA-XS-A8TJ-01 4 102951231 102951231 A T BANK1 Missense_Mutation p.E570V 0.11 tolerated(0.07) benign(0.311) TCGA-XS-A8TJ-01 4 108824532 108824532 C T SGMS2 Silent p.F239F 0.13 TCGA-XS-A8TJ-01 4 113540109 113540109 C G C4orf21 Missense_Mutation p.L363F 0.11 tolerated(0.14) benign(0.018) TCGA-XS-A8TJ-01 4 119606708 119606708 G C METTL14 Missense_Mutation p.E7Q 0.07 tolerated_low_confidence(0.22) unknown(0) TCGA-XS-A8TJ-01 4 126412295 126412295 C T FAT4 Missense_Mutation p.P4773L 0.15 probably_damaging(0.998) TCGA-XS-A8TJ-01 4 139087803 139087803 G C SLC7A11 3'UTR 0.17 TCGA-XS-A8TJ-01 4 171009592 171009592 C T AADAT Missense_Mutation p.G64E 0.16 tolerated(0.87) benign(0.018) TCGA-XS-A8TJ-01 4 99962255 99962255 A G METAP1 Missense_Mutation p.E165G 0.12 deleterious(0) probably_damaging(0.997) TCGA-XS-A8TJ-01 5 1214109 1214109 C T SLC6A19 Silent p.G272G 0.06 TCGA-XS-A8TJ-01 5 149933050 149933050 C T NDST1 3'UTR 0.15 TCGA-XS-A8TJ-01 5 21501851 21501851 T A GUSBP1 RNA 0.04 TCGA-XS-A8TJ-01 6 12120506 12120506 G A HIVEP1 Missense_Mutation p.D160N 0.15 tolerated(0.21) benign(0.087) TCGA-XS-A8TJ-01 6 165956933 165956933 G A PDE10A Missense_Mutation p.S64L 0.16 tolerated(0.31) benign(0.005) TCGA-XS-A8TJ-01 6 24424067 24424067 G A MRS2 3'UTR 0.15 TCGA-XS-A8TJ-01 6 31838687 31838687 T C SLC44A4 Missense_Mutation p.Y280C 0.11 deleterious(0) possibly_damaging(0.886) TCGA-XS-A8TJ-01 6 43754092 43754092 G A VEGFA 3'Flank 0.06 TCGA-XS-A8TJ-01 6 73111931 73111931 C T RIMS1 3'Flank 0.20 TCGA-XS-A8TJ-01 7 102066381 102066381 C T PRKRIP1 3'UTR 0.08 TCGA-XS-A8TJ-01 7 107350571 107350571 C T SLC26A4 Missense_Mutation p.T721M 0.35 deleterious(0) probably_damaging(0.998) TCGA-XS-A8TJ-01 7 150269753 150269753 G A GIMAP4 Missense_Mutation p.E199K 0.22 deleterious(0.04) possibly_damaging(0.85) TCGA-XS-A8TJ-01 7 6089663 6089663 C T EIF2AK1 Silent p.T97T 0.10 TCGA-XS-A8TJ-01 7 90895755 90895755 G A FZD1 Missense_Mutation p.M520I 0.15 tolerated(0.68) benign(0.023) TCGA-XS-A8TJ-01 8 143558763 143558763 G A BAI1 Missense_Mutation p.E414K 0.12 deleterious(0) possibly_damaging(0.621) TCGA-XS-A8TJ-01 8 37718954 37718954 C T RAB11FIP1 3'UTR 0.07 TCGA-XS-A8TJ-01 8 48625422 48625422 C G SPIDR Missense_Mutation p.L726V 0.11 tolerated(0.18) benign(0.073) TCGA-XS-A8TJ-01 8 53571476 53571476 A G RB1CC1 Missense_Mutation p.F584L 0.17 tolerated(0.42) probably_damaging(0.986) TCGA-XS-A8TJ-01 8 65528783 65528784 - T CYP7B1 Frame_Shift_Ins p.N105Kfs*3 0.14 TCGA-XS-A8TJ-01 8 95549352 95549352 G A KIAA1429 Silent p.I98I 0.11 TCGA-XS-A8TJ-01 9 119162234 119162234 C T PAPPA-AS1 5'UTR 0.10 TCGA-XS-A8TJ-01 9 131023801 131023801 T A GOLGA2 Nonsense_Mutation p.K395* 0.15 TCGA-XS-A8TJ-01 9 71998635 71998635 C T FAM189A2 Missense_Mutation p.P195L 0.08 deleterious(0) probably_damaging(1) TCGA-XS-A8TJ-01 9 72501769 72501769 G A C9orf135 Silent p.T155T 0.15 TCGA-XS-A8TJ-01 X 101396153 101396153 C T TCEAL6 Missense_Mutation p.E51K 0.07 tolerated(0.22) benign(0.045) TCGA-XS-A8TJ-01 X 10417423 10417423 T G MID1 Silent p.T663T 0.11 TCGA-XS-A8TJ-01 X 106171751 106171751 C T CLDN2 Missense_Mutation p.S98F 0.08 deleterious(0) probably_damaging(0.948) TCGA-XS-A8TJ-01 X 110491126 110491126 C T CAPN6 Missense_Mutation p.D527N 0.14 tolerated(0.06) benign(0) TCGA-XS-A8TJ-01 X 123026593 123026593 G A XIAP Missense_Mutation p.E357K 0.05 tolerated(0.15) benign(0.001) TCGA-XS-A8TJ-01 X 123519853 123519853 C A TENM1 Missense_Mutation p.C1917F 0.15 tolerated(0.06) benign(0.001) TCGA-XS-A8TJ-01 X 128889289 128889289 G A XPNPEP2 Missense_Mutation p.G413R 0.29 deleterious(0) probably_damaging(1) TCGA-XS-A8TJ-01 X 131573595 131573595 C T MBNL3 Silent p.L15L 0.05 TCGA-XS-A8TJ-01 X 132161368 132161368 C T USP26 Missense_Mutation p.C294Y 0.10 tolerated(0.12) benign(0.028) TCGA-XS-A8TJ-01 X 14891626 14891626 C T MOSPD2 5'UTR 0.16 TCGA-XS-A8TJ-01 X 20025484 20025484 A C MAP7D2 3'UTR 0.06 TCGA-XS-A8TJ-01 X 30578022 30578022 C A CXorf21 Nonsense_Mutation p.E151* 0.13 TCGA-XS-A8TJ-01 X 34962239 34962239 G A FAM47B Missense_Mutation p.G431R 0.04 tolerated(0.58) benign(0.035) TCGA-XS-A8TJ-01 X 54359744 54359744 G A WNK3 Silent p.F121F 0.11 TCGA-XS-A8TJ-01 X 54471115 54471115 C T TSR2 3'UTR 0.17 TCGA-XS-A8TJ-01 X 54950079 54950079 C G TRO Missense_Mutation p.Q372E 0.08 tolerated(0.05) unknown(0) TCGA-XS-A8TJ-01 X 69626175 69626175 G A KIF4A Missense_Mutation p.D1015N 0.05 tolerated(0.15) benign(0.048) TCGA-XS-A8TJ-01 X 70469488 70469488 G C ZMYM3 Silent p.L431L 0.11 TCGA-XS-A8TJ-01 X 99549329 99549329 G A PCDH19 3'UTR 0.07 TCGA-ZJ-A8QO-01 10 116013470 116013470 C T VWA2 Missense_Mutation p.S38L 0.21 deleterious(0.05) possibly_damaging(0.786) TCGA-ZJ-A8QO-01 10 119017336 119017336 C T SLC18A2 Silent p.I308I 0.18 TCGA-ZJ-A8QO-01 10 12251970 12251970 G A CDC123 Missense_Mutation p.D51N 0.17 tolerated(0.47) benign(0.008) TCGA-ZJ-A8QO-01 10 60148010 60148010 C G TFAM Nonsense_Mutation p.S94* 0.04 TCGA-ZJ-A8QO-01 11 124500640 124500640 G A TBRG1 Splice_Site p.X279_splice 0.33 TCGA-ZJ-A8QO-01 11 134147593 134147593 G A GLB1L3 Splice_Site p.X50_splice 0.11 TCGA-ZJ-A8QO-01 11 18557990 18557992 CTT - UEVLD In_Frame_Del p.E362del 0.56 TCGA-ZJ-A8QO-01 11 48285714 48285714 C - OR4X1 Frame_Shift_Del p.L102Sfs*12 0.23 TCGA-ZJ-A8QO-01 12 119594461 119594461 G A SRRM4 Missense_Mutation p.R565H 0.38 deleterious_low_confidence(0) unknown(0) TCGA-ZJ-A8QO-01 12 124409712 124409712 G A DNAH10 Missense_Mutation p.R3843Q 0.26 possibly_damaging(0.557) TCGA-ZJ-A8QO-01 12 33592436 33592436 C G SYT10 Missense_Mutation p.G8R 0.40 tolerated_low_confidence(0.43) benign(0.002) TCGA-ZJ-A8QO-01 12 40717055 40717055 T G LRRK2 Missense_Mutation p.I1868S 0.23 deleterious(0.01) possibly_damaging(0.816) TCGA-ZJ-A8QO-01 12 45725201 45725201 C A ANO6 Missense_Mutation p.Q113K 0.24 tolerated(0.7) benign(0.023) TCGA-ZJ-A8QO-01 12 52566923 52566923 C T KRT80 Missense_Mutation p.A286T 0.35 deleterious(0.03) possibly_damaging(0.56) TCGA-ZJ-A8QO-01 12 57873122 57873122 C T ARHGAP9 Missense_Mutation p.R23Q 0.43 tolerated(0.64) benign(0.01) TCGA-ZJ-A8QO-01 12 8926647 8926649 ATG - RIMKLB 3'UTR 0.27 TCGA-ZJ-A8QO-01 13 28623554 28623554 G A FLT3 Missense_Mutation p.H335Y 0.27 deleterious(0.01) possibly_damaging(0.899) TCGA-ZJ-A8QO-01 14 21990267 21990267 T C SALL2 3'UTR 0.27 TCGA-ZJ-A8QO-01 14 64625506 64625506 A T SYNE2 Missense_Mutation p.N5319I 0.57 benign(0.391) TCGA-ZJ-A8QO-01 15 25465694 25465694 C T SNORD115-27 RNA 0.43 TCGA-ZJ-A8QO-01 15 75185642 75185642 G A MPI Silent p.V217V 0.57 TCGA-ZJ-A8QO-01 16 2122298 2122298 C T TSC2 Silent p.R718R 0.14 TCGA-ZJ-A8QO-01 16 30753222 30753222 C T SRCAP 3'Flank 0.12 TCGA-ZJ-A8QO-01 16 3801796 3801796 C T CREBBP Missense_Mutation p.C1237Y 0.54 unknown(0) TCGA-ZJ-A8QO-01 16 68389690 68389690 G A PRMT7 Missense_Mutation p.R572H 0.08 tolerated(0.1) benign(0.031) TCGA-ZJ-A8QO-01 16 70954853 70954853 G A HYDIN Missense_Mutation p.R2476W 0.45 probably_damaging(0.988) TCGA-ZJ-A8QO-01 17 1634448 1634448 G A WDR81 Silent p.K1351K 0.39 TCGA-ZJ-A8QO-01 17 2594002 2594002 G A CLUH Silent p.N1272N 0.40 TCGA-ZJ-A8QO-01 17 7127798 7127798 G A ACADVL Splice_Site p.X559_splice 0.11 TCGA-ZJ-A8QO-01 17 74772516 74772516 C T MFSD11 Silent p.L360L 0.23 TCGA-ZJ-A8QO-01 18 28588261 28588261 G A DSC3 Silent p.P498P 0.25 TCGA-ZJ-A8QO-01 18 44146224 44146224 C G LOXHD1 Missense_Mutation p.Q811H 0.25 deleterious(0.01) possibly_damaging(0.785) TCGA-ZJ-A8QO-01 18 63547885 63547885 G T CDH7 Missense_Mutation p.V705F 0.45 tolerated(0.12) benign(0.37) TCGA-ZJ-A8QO-01 19 12490675 12490675 G A CTD-3105H18.14 3'UTR 0.33 TCGA-ZJ-A8QO-01 19 2422211 2422211 C T TMPRSS9 Silent p.D804D 0.38 TCGA-ZJ-A8QO-01 19 37488230 37488230 G A ZNF568 Missense_Mutation p.R482H 0.33 tolerated(0.6) probably_damaging(0.994) TCGA-ZJ-A8QO-01 19 3767416 3767416 C A MRPL54 3'UTR 0.34 TCGA-ZJ-A8QO-01 19 42128061 42128061 C T CEACAM4 Missense_Mutation p.A169T 0.37 tolerated(0.3) possibly_damaging(0.761) TCGA-ZJ-A8QO-01 19 44662471 44662471 T A ZNF234 3'UTR 0.36 TCGA-ZJ-A8QO-01 19 45809925 45809925 C T CKM 3'UTR 0.27 TCGA-ZJ-A8QO-01 19 50204796 50204796 G T CPT1C Missense_Mutation p.D200Y 0.36 tolerated(0.22) possibly_damaging(0.767) TCGA-ZJ-A8QO-01 19 53217299 53217299 C T ZNF611 Missense_Mutation p.M53I 0.27 deleterious(0.03) probably_damaging(0.932) TCGA-ZJ-A8QO-01 19 57840456 57840456 G A ZNF543 Silent p.K542K 0.32 TCGA-ZJ-A8QO-01 1 145536043 145536043 G A ITGA10 Missense_Mutation p.R712H 0.21 deleterious(0) probably_damaging(1) TCGA-ZJ-A8QO-01 1 158605703 158605703 C T SPTA1 Missense_Mutation p.R1811Q 0.23 deleterious(0.01) probably_damaging(1) TCGA-ZJ-A8QO-01 1 16475323 16475323 C A EPHA2 Nonsense_Mutation p.E125* 0.30 TCGA-ZJ-A8QO-01 1 167095328 167095328 C T DUSP27 Silent p.S320S 0.44 TCGA-ZJ-A8QO-01 1 177001742 177001742 G A ASTN1 Silent p.L239L 0.19 TCGA-ZJ-A8QO-01 1 223568348 223568348 G A C1orf65 Missense_Mutation p.D511N 0.47 tolerated(0.06) possibly_damaging(0.866) TCGA-ZJ-A8QO-01 1 236433250 236433250 G A ERO1LB Silent p.I49I 0.28 TCGA-ZJ-A8QO-01 1 35370693 35370693 G A DLGAP3 Missense_Mutation p.P98S 0.36 tolerated(0.52) benign(0.133) TCGA-ZJ-A8QO-01 1 44063430 44063430 C T PTPRF Missense_Mutation p.P609S 0.24 tolerated(0.05) probably_damaging(0.943) TCGA-ZJ-A8QO-01 1 9657091 9657091 G T TMEM201 Missense_Mutation p.A137S 0.33 tolerated(1) possibly_damaging(0.62) TCGA-ZJ-A8QO-01 20 34328508 34328508 C T RBM39 Intron 0.26 TCGA-ZJ-A8QO-01 20 49577140 49577140 C T MOCS3 3'UTR 0.33 TCGA-ZJ-A8QO-01 20 52770204 52770204 G A CYP24A1 3'UTR 0.35 TCGA-ZJ-A8QO-01 2 166003486 166003486 T C SCN3A Silent p.L478L 0.21 TCGA-ZJ-A8QO-01 2 175263117 175263117 G C SCRN3 Missense_Mutation p.E36Q 0.26 deleterious(0.01) probably_damaging(0.967) TCGA-ZJ-A8QO-01 2 179611639 179611639 C T TTN Intron 0.30 TCGA-ZJ-A8QO-01 2 186673306 186673306 G A FSIP2 Missense_Mutation p.V6514I 0.33 benign(0.058) TCGA-ZJ-A8QO-01 2 20130275 20130275 A - WDR35 Frame_Shift_Del p.L1013Cfs*37 0.14 TCGA-ZJ-A8QO-01 2 207605794 207605795 - T MDH1B Frame_Shift_Ins p.N481Kfs*20 0.31 TCGA-ZJ-A8QO-01 2 222283981 222283981 C G EPHA4 3'UTR 0.23 TCGA-ZJ-A8QO-01 2 234198559 234198559 G A ATG16L1 Silent p.A421A 0.38 TCGA-ZJ-A8QO-01 2 234854620 234854620 G A TRPM8 Missense_Mutation p.E274K 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-ZJ-A8QO-01 2 74275467 74275467 C G TET3 Missense_Mutation p.T673R 0.36 deleterious(0) probably_damaging(0.954) TCGA-ZJ-A8QO-01 2 85604584 85604584 G A ELMOD3 Missense_Mutation p.R242H 0.24 tolerated(0.31) benign(0.006) TCGA-ZJ-A8QO-01 3 15499703 15499703 C T COLQ Missense_Mutation p.R315Q 0.18 tolerated(0.22) unknown(0) TCGA-ZJ-A8QO-01 3 160137291 160137291 A - SMC4 Frame_Shift_Del p.K608Nfs*15 0.36 TCGA-ZJ-A8QO-01 3 52728893 52728893 G A GLT8D1 Nonsense_Mutation p.R362* 0.57 TCGA-ZJ-A8QO-01 4 114277742 114277742 G A ANK2 Silent p.E2656E 0.34 TCGA-ZJ-A8QO-01 4 123151364 123151364 G A KIAA1109 Silent p.K1107K 0.20 TCGA-ZJ-A8QO-01 4 54250041 54250041 T C FIP1L1 Silent p.Y110Y 0.19 TCGA-ZJ-A8QO-01 5 137854544 137854544 G A ETF1 Silent p.S33S 0.45 TCGA-ZJ-A8QO-01 5 140502262 140502262 C T PCDHB4 Nonsense_Mutation p.R228* 0.29 TCGA-ZJ-A8QO-01 5 176307703 176307703 T G UNC5A 3'UTR 0.24 TCGA-ZJ-A8QO-01 5 79361263 79361263 G A THBS4 Missense_Mutation p.G386E 0.32 deleterious(0.01) probably_damaging(1) TCGA-ZJ-A8QO-01 5 96363475 96363475 C T LNPEP Missense_Mutation p.A968V 0.28 tolerated(0.47) possibly_damaging(0.61) TCGA-ZJ-A8QO-01 6 10924837 10924837 C T SYCP2L Missense_Mutation p.S394L 0.53 tolerated(0.48) benign(0.014) TCGA-ZJ-A8QO-01 6 152265498 152265498 T C ESR1 Silent p.S317S 0.37 TCGA-ZJ-A8QO-01 6 75794338 75794338 G A COL12A1 3'UTR 0.46 TCGA-ZJ-A8QO-01 7 128767487 128767487 G A RP11-286H14.4 RNA 0.29 TCGA-ZJ-A8QO-01 7 133261232 133261232 G T EXOC4 Intron 0.26 TCGA-ZJ-A8QO-01 7 148768172 148768172 C T ZNF786 Silent p.P564P 0.22 TCGA-ZJ-A8QO-01 7 21658770 21658770 G A DNAH11 Missense_Mutation p.R1441Q 0.32 benign(0.001) TCGA-ZJ-A8QO-01 7 95705393 95705393 G A DYNC1I1 Missense_Mutation p.E529K 0.23 deleterious(0.01) benign(0.437) TCGA-ZJ-A8QO-01 8 125094669 125094669 C T FER1L6 Missense_Mutation p.A1454V 0.43 deleterious(0.01) probably_damaging(0.911) TCGA-ZJ-A8QO-01 8 145557254 145557254 G A SCRT1 Missense_Mutation p.R214C 0.32 deleterious(0) unknown(0) TCGA-ZJ-A8QO-01 8 22477915 22477915 G C CCAR2 3'UTR 0.22 TCGA-ZJ-A8QO-01 8 28573736 28573736 C G EXTL3 Missense_Mutation p.L54V 0.47 tolerated(1) benign(0.001) TCGA-ZJ-A8QO-01 8 37822945 37822945 C A ADRB3 Missense_Mutation p.R348L 0.35 deleterious(0) possibly_damaging(0.778) TCGA-ZJ-A8QO-01 9 133271664 133271664 G A AL354898.1 5'Flank 0.12 TCGA-ZJ-A8QO-01 9 140395346 140395346 G A PNPLA7 Silent p.D518D 0.58 TCGA-ZJ-A8QO-01 9 77403589 77403589 C T TRPM6 Missense_Mutation p.V870M 0.14 tolerated(0.09) benign(0.161) TCGA-ZJ-A8QO-01 X 107977327 107977327 C T IRS4 Missense_Mutation p.V750M 0.20 deleterious(0) unknown(0) TCGA-ZJ-A8QO-01 X 131762528 131762528 C T HS6ST2 Missense_Mutation p.R554H 0.22 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-ZJ-A8QO-01 X 14038292 14038292 G A GEMIN8 Missense_Mutation p.S126L 0.15 deleterious(0) probably_damaging(0.991) TCGA-ZJ-A8QO-01 X 15266932 15266932 C A ASB9 Missense_Mutation p.G232C 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-ZJ-A8QO-01 X 37301055 37301055 T A PRRG1 Intron 0.15 TCGA-ZJ-A8QO-01 X 47486593 47486593 C A CFP Missense_Mutation p.C238F 0.27 deleterious(0) probably_damaging(0.994) TCGA-ZJ-A8QO-01 X 53277306 53277306 C T IQSEC2 Missense_Mutation p.E858K 0.30 deleterious(0) probably_damaging(0.981) TCGA-ZJ-A8QO-01 X 57313198 57313198 G A FAAH2 5'UTR 0.32 TCGA-ZJ-A8QO-01 X 67942384 67942384 T C STARD8 Missense_Mutation p.Y899H 0.23 tolerated(0.18) benign(0.09) TCGA-ZJ-A8QO-01 X 92966191 92966191 T A FAM133A 3'UTR 0.12 TCGA-ZJ-A8QR-01 10 106118170 106118170 C G CCDC147 Silent p.L27L 0.25 TCGA-ZJ-A8QR-01 10 134151120 134151120 C T LRRC27 Nonsense_Mutation p.Q88* 0.33 TCGA-ZJ-A8QR-01 10 18291999 18291999 G A SLC39A12 Intron 0.42 TCGA-ZJ-A8QR-01 10 28224132 28224132 G C ARMC4 Missense_Mutation p.Q768E 0.23 tolerated(0.16) probably_damaging(0.999) TCGA-ZJ-A8QR-01 10 48371305 48371305 C T ZNF488 Missense_Mutation p.S258L 0.38 deleterious(0) probably_damaging(0.953) TCGA-ZJ-A8QR-01 10 72014714 72014714 C T NPFFR1 Silent p.%3D 0.46 TCGA-ZJ-A8QR-01 10 75003238 75003238 G C DNAJC9 Missense_Mutation p.L235V 0.39 deleterious(0.02) possibly_damaging(0.515) TCGA-ZJ-A8QR-01 10 99130257 99130257 C A RRP12 Missense_Mutation p.V882L 0.40 tolerated(0.1) benign(0.006) TCGA-ZJ-A8QR-01 11 118771368 118771368 G C BCL9L Silent p.L1028L 0.45 TCGA-ZJ-A8QR-01 11 118888751 118888751 C T RPS25 Missense_Mutation p.D6N 0.67 tolerated(0.2) benign(0) TCGA-ZJ-A8QR-01 11 16760328 16760328 G A C11orf58 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-ZJ-A8QR-01 11 18566208 18566208 T C UEVLD Missense_Mutation p.K341R 0.36 tolerated(0.36) benign(0.042) TCGA-ZJ-A8QR-01 11 21305767 21305767 C T NELL1 Intron 0.46 TCGA-ZJ-A8QR-01 11 3696288 3696288 C T NUP98 3'UTR 0.37 TCGA-ZJ-A8QR-01 11 47296554 47296554 G A MADD Missense_Mutation p.R168H 0.07 tolerated(0.1) benign(0.009) TCGA-ZJ-A8QR-01 11 47738915 47738915 A C FNBP4 3'UTR 0.33 TCGA-ZJ-A8QR-01 11 56949659 56949659 C T LRRC55 Missense_Mutation p.R98W 0.42 deleterious(0.02) probably_damaging(0.996) TCGA-ZJ-A8QR-01 11 64108775 64108775 G A CCDC88B Missense_Mutation p.R141Q 0.27 tolerated(0.31) benign(0.093) TCGA-ZJ-A8QR-01 11 67799618 67799618 G C NDUFS8 Splice_Site p.X1_splice 0.24 TCGA-ZJ-A8QR-01 11 75274677 75274677 A G SERPINH1 5'UTR 0.17 TCGA-ZJ-A8QR-01 11 76507694 76507694 C G TSKU Missense_Mutation p.S345C 0.32 tolerated_low_confidence(0.06) benign(0.211) TCGA-ZJ-A8QR-01 11 76888622 76888622 G C MYO7A Missense_Mutation p.E739Q 0.16 tolerated(0.66) possibly_damaging(0.635) TCGA-ZJ-A8QR-01 12 124071366 124071366 C G TMED2 Missense_Mutation p.H85D 0.27 tolerated(0.09) benign(0.012) TCGA-ZJ-A8QR-01 12 131687455 131687455 C G RP11-638F5.1 RNA 0.34 TCGA-ZJ-A8QR-01 12 24736901 24736901 G A LINC00477 RNA 0.20 TCGA-ZJ-A8QR-01 12 49221693 49221693 C T CACNB3 3'UTR 0.05 TCGA-ZJ-A8QR-01 12 49412708 49412708 C T PRKAG1 5'Flank 0.27 TCGA-ZJ-A8QR-01 12 49444831 49444831 C A KMT2D Nonsense_Mutation p.E879* 0.35 TCGA-ZJ-A8QR-01 12 53691835 53691835 G A PFDN5 Missense_Mutation p.E97K 0.38 tolerated(0.31) benign(0.12) TCGA-ZJ-A8QR-01 12 53694012 53694012 G A C12orf10 Missense_Mutation p.D99N 0.32 deleterious(0.03) benign(0.251) TCGA-ZJ-A8QR-01 12 538017 538017 G A CCDC77 Missense_Mutation p.E166K 0.28 deleterious(0) possibly_damaging(0.701) TCGA-ZJ-A8QR-01 12 55356366 55356366 C T TESPA1 Missense_Mutation p.R439K 0.37 deleterious_low_confidence(0.04) benign(0.125) TCGA-ZJ-A8QR-01 12 7087635 7087635 T C LPCAT3 Missense_Mutation p.N303S 0.09 tolerated(0.07) benign(0.069) TCGA-ZJ-A8QR-01 12 76748824 76748824 C G OSBPL8 3'UTR 0.40 TCGA-ZJ-A8QR-01 12 93795001 93795001 T G NUDT4 3'UTR 0.23 TCGA-ZJ-A8QR-01 12 96682982 96682982 G C CDK17 Missense_Mutation p.L361V 0.39 deleterious(0) probably_damaging(0.998) TCGA-ZJ-A8QR-01 13 50285159 50285159 C T KPNA3 Splice_Site p.X258_splice 0.58 TCGA-ZJ-A8QR-01 13 79175985 79175985 G A POU4F1 Silent p.F275F 0.36 TCGA-ZJ-A8QR-01 14 105412161 105412161 C - AHNAK2 Frame_Shift_Del p.K3210Sfs*30 0.21 TCGA-ZJ-A8QR-01 14 31771516 31771516 C G RP11-596D21.1 RNA 0.28 TCGA-ZJ-A8QR-01 14 50094859 50094859 G A DNAAF2 Silent p.V626V 0.39 TCGA-ZJ-A8QR-01 14 53324343 53324344 TG - FERMT2 3'UTR 0.21 TCGA-ZJ-A8QR-01 14 64470001 64470001 C T SYNE2 Silent p.I1450I 0.29 TCGA-ZJ-A8QR-01 14 70635049 70635049 C G SLC8A3 Missense_Mutation p.E31Q 0.07 tolerated_low_confidence(0.54) benign(0.056) TCGA-ZJ-A8QR-01 15 23410829 23410829 C T RP11-467N20.5 Splice_Site p.X152_splice 0.23 TCGA-ZJ-A8QR-01 15 31212755 31212755 G A FAN1 Missense_Mutation p.E651K 0.14 tolerated(0.13) benign(0.434) TCGA-ZJ-A8QR-01 15 31245784 31245784 G A MTMR10 Nonsense_Mutation p.R373* 0.21 TCGA-ZJ-A8QR-01 15 41775358 41775358 G A RTF1 3'UTR 0.27 TCGA-ZJ-A8QR-01 15 45467531 45467531 C T SHF Missense_Mutation p.E180K 0.39 tolerated(0.08) probably_damaging(0.977) TCGA-ZJ-A8QR-01 15 56387309 56387309 C T RFX7 Missense_Mutation p.E873K 0.60 tolerated_low_confidence(0.13) benign(0.068) TCGA-ZJ-A8QR-01 15 64461364 64461364 G T CSNK1G1 3'UTR 0.25 TCGA-ZJ-A8QR-01 15 88680771 88680771 G C NTRK3 Missense_Mutation p.F162L 0.31 tolerated(1) benign(0.042) TCGA-ZJ-A8QR-01 15 90166947 90166947 G C TICRR Missense_Mutation p.E1136Q 0.10 tolerated(0.25) benign(0.069) TCGA-ZJ-A8QR-01 15 98980734 98980734 G A FAM169B 3'UTR 0.16 TCGA-ZJ-A8QR-01 16 15737446 15737446 C T NDE1 5'UTR 0.64 TCGA-ZJ-A8QR-01 16 4748050 4748050 C G ANKS3 Missense_Mutation p.E580Q 0.49 tolerated_low_confidence(0.06) possibly_damaging(0.848) TCGA-ZJ-A8QR-01 16 81207994 81207994 G A PKD1L2 3'UTR 0.38 TCGA-ZJ-A8QR-01 17 15620479 15620479 C T ZNF286A Missense_Mutation p.L481F 0.21 tolerated(0.16) probably_damaging(1) TCGA-ZJ-A8QR-01 17 18565375 18565375 G A ZNF286B Missense_Mutation p.L482F 0.18 deleterious(0) possibly_damaging(0.84) TCGA-ZJ-A8QR-01 17 27037996 27037996 T C PROCA1 Intron 0.27 TCGA-ZJ-A8QR-01 17 36646714 36646714 C T ARHGAP23 Silent p.L1024L 0.22 TCGA-ZJ-A8QR-01 17 48452922 48452922 C T EME1 Missense_Mutation p.P118L 0.38 tolerated(0.11) benign(0.012) TCGA-ZJ-A8QR-01 17 5405076 5405076 C G NLRP1 3'UTR 0.12 TCGA-ZJ-A8QR-01 17 61561775 61561775 G A ACE Silent p.P598P 0.45 TCGA-ZJ-A8QR-01 17 65069307 65069307 C T HELZ 3'UTR 0.24 TCGA-ZJ-A8QR-01 17 74536276 74536276 G A PRCD Missense_Mutation p.R18Q 0.41 tolerated_low_confidence(0.08) benign(0.417) TCGA-ZJ-A8QR-01 17 78319655 78319655 T A RNF213 Missense_Mutation p.V2507E 0.11 probably_damaging(0.92) TCGA-ZJ-A8QR-01 18 13884710 13884710 C T MC2R Missense_Mutation p.V270I 0.32 tolerated(0.59) benign(0.041) TCGA-ZJ-A8QR-01 18 34801999 34801999 G C KIAA1328 Missense_Mutation p.D515H 0.40 deleterious(0) probably_damaging(0.998) TCGA-ZJ-A8QR-01 18 44027584 44027584 C T RNF165 Nonsense_Mutation p.Q182* 0.39 TCGA-ZJ-A8QR-01 18 44036521 44036521 G A RNF165 Silent p.V321V 0.43 TCGA-ZJ-A8QR-01 18 56008310 56008310 C T NEDD4L Missense_Mutation p.S389L 0.37 deleterious(0.02) benign(0.401) TCGA-ZJ-A8QR-01 18 63430160 63430160 G A CDH7 Missense_Mutation p.E28K 0.11 tolerated(0.54) benign(0.079) TCGA-ZJ-A8QR-01 19 1105788 1105788 G A GPX4 Silent p.K152K 0.57 TCGA-ZJ-A8QR-01 19 15132294 15132294 C T CCDC105 Missense_Mutation p.S335L 0.43 tolerated(0.12) benign(0.016) TCGA-ZJ-A8QR-01 19 16339620 16339620 G A AP1M1 Missense_Mutation p.V322M 0.40 deleterious(0.02) probably_damaging(0.993) TCGA-ZJ-A8QR-01 19 19390109 19390109 G A SUGP1 Missense_Mutation p.H481Y 0.33 tolerated(0.66) benign(0.135) TCGA-ZJ-A8QR-01 19 2206732 2206732 C T DOT1L Silent p.G264G 0.09 TCGA-ZJ-A8QR-01 19 22154259 22154259 C T ZNF208 Missense_Mutation p.G1193R 0.47 deleterious(0.04) possibly_damaging(0.471) TCGA-ZJ-A8QR-01 19 38190240 38190240 G C ZNF607 Silent p.L264L 0.32 TCGA-ZJ-A8QR-01 19 39232475 39232475 C G CAPN12 Missense_Mutation p.V168L 0.22 tolerated(0.28) probably_damaging(0.999) TCGA-ZJ-A8QR-01 19 44002028 44002028 C T PHLDB3 Missense_Mutation p.E179K 0.30 deleterious(0.01) possibly_damaging(0.773) TCGA-ZJ-A8QR-01 19 47931923 47931923 C A SLC8A2 3'UTR 0.39 TCGA-ZJ-A8QR-01 19 52076575 52076575 G A ZNF175 5'UTR 0.41 TCGA-ZJ-A8QR-01 19 53571860 53571860 G T ZNF160 Missense_Mutation p.H643N 0.31 deleterious(0) probably_damaging(0.941) TCGA-ZJ-A8QR-01 19 57646636 57646636 G A ZIM3 Missense_Mutation p.H357Y 0.29 deleterious(0) probably_damaging(0.99) TCGA-ZJ-A8QR-01 19 630069 630069 T C POLRMT Missense_Mutation p.D98G 0.11 tolerated(0.41) benign(0) TCGA-ZJ-A8QR-01 19 8130702 8130702 C T FBN3 3'UTR 0.56 TCGA-ZJ-A8QR-01 19 9922073 9922073 G A FBXL12 Silent p.R160R 0.29 TCGA-ZJ-A8QR-01 1 107867030 107867030 G C NTNG1 Missense_Mutation p.E125Q 0.40 deleterious(0.02) benign(0.139) TCGA-ZJ-A8QR-01 1 12387839 12387839 G A VPS13D Missense_Mutation p.E2709K 0.51 probably_damaging(0.981) TCGA-ZJ-A8QR-01 1 154909177 154909177 C G PMVK 5'UTR 0.40 TCGA-ZJ-A8QR-01 1 154956440 154956440 G A FLAD1 Silent p.Q90Q 0.41 TCGA-ZJ-A8QR-01 1 163043262 163043262 C G RGS4 Missense_Mutation p.F173L 0.42 deleterious(0) probably_damaging(0.998) TCGA-ZJ-A8QR-01 1 171115637 171115637 C G FMO6P Missense_Mutation p.L155V 0.39 deleterious(0.01) benign(0.262) TCGA-ZJ-A8QR-01 1 183511341 183511341 G A SMG7 Missense_Mutation p.A516T 0.38 tolerated(0.28) benign(0.034) TCGA-ZJ-A8QR-01 1 19184074 19184074 C T TAS1R2 Silent p.A78A 0.48 TCGA-ZJ-A8QR-01 1 202777455 202777455 G A KDM5B 5'UTR 0.41 TCGA-ZJ-A8QR-01 1 2132486 2132486 C T C1orf86 5'Flank 0.33 TCGA-ZJ-A8QR-01 1 220387254 220387254 G C RAB3GAP2 Missense_Mutation p.S83C 0.36 deleterious(0) possibly_damaging(0.482) TCGA-ZJ-A8QR-01 1 240493987 240493987 C G FMN2 Missense_Mutation p.R1508G 0.23 probably_damaging(1) TCGA-ZJ-A8QR-01 1 241792193 241792193 T G CHML 3'UTR 0.44 TCGA-ZJ-A8QR-01 1 241792303 241792303 A G CHML 3'UTR 0.38 TCGA-ZJ-A8QR-01 1 25784899 25784899 G C TMEM57 Missense_Mutation p.D224H 0.44 tolerated(0.06) benign(0.373) TCGA-ZJ-A8QR-01 1 38304324 38304324 C T MTF1 Missense_Mutation p.R251Q 0.46 deleterious(0) probably_damaging(0.973) TCGA-ZJ-A8QR-01 1 62288684 62288684 C T INADL Missense_Mutation p.S584F 0.30 deleterious(0) probably_damaging(0.997) TCGA-ZJ-A8QR-01 1 6636612 6636612 C T TAS1R1 Silent p.L466L 0.34 TCGA-ZJ-A8QR-01 1 76397747 76397747 G C ASB17 Nonsense_Mutation p.S77* 0.31 TCGA-ZJ-A8QR-01 1 84986296 84986296 C A SPATA1 RNA 0.05 TCGA-ZJ-A8QR-01 1 87814230 87814230 G C LMO4 3'UTR 0.27 TCGA-ZJ-A8QR-01 1 89271440 89271440 G A PKN2 Intron 0.22 TCGA-ZJ-A8QR-01 20 45131494 45131494 G A ZNF334 Missense_Mutation p.P162S 0.11 tolerated(0.19) benign(0) TCGA-ZJ-A8QR-01 20 56093701 56093701 G C CTCFL Intron 0.42 TCGA-ZJ-A8QR-01 22 21538074 21538074 C T FAM230B RNA 0.08 TCGA-ZJ-A8QR-01 22 22162042 22162042 C T MAPK1 Silent p.E71E 0.44 TCGA-ZJ-A8QR-01 22 22453473 22453473 C T IGLV8-61 Silent p.L73L 0.37 TCGA-ZJ-A8QR-01 22 23465296 23465296 G A GNAZ Missense_Mutation p.R249H 0.31 tolerated(0.37) possibly_damaging(0.521) TCGA-ZJ-A8QR-01 22 31330833 31330833 G A MORC2 Missense_Mutation p.P648S 0.34 deleterious_low_confidence(0.01) benign(0.125) TCGA-ZJ-A8QR-01 22 31644656 31644656 C T LIMK2 5'UTR 0.36 TCGA-ZJ-A8QR-01 22 45241212 45241212 G A ARHGAP8 Silent p.L342L 0.44 TCGA-ZJ-A8QR-01 22 46655489 46655489 G A PKDREJ Missense_Mutation p.S1244F 0.43 deleterious(0) probably_damaging(0.958) TCGA-ZJ-A8QR-01 22 50722644 50722644 T G PLXNB2 Splice_Site p.X728_splice 0.37 TCGA-ZJ-A8QR-01 2 103274193 103274193 G A SLC9A2 Missense_Mutation p.G154S 0.36 deleterious(0) probably_damaging(1) TCGA-ZJ-A8QR-01 2 141283562 141283562 T C LRP1B Missense_Mutation p.N2626S 0.29 benign(0.292) TCGA-ZJ-A8QR-01 2 172180585 172180585 C G METTL8 3'UTR 0.13 TCGA-ZJ-A8QR-01 2 179589096 179589096 G A TTN Silent p.I7002I 0.31 TCGA-ZJ-A8QR-01 2 179753285 179753285 A T CCDC141 Missense_Mutation p.L459Q 0.32 deleterious(0.04) benign(0.256) TCGA-ZJ-A8QR-01 2 196619167 196619167 G A DNAH7 Silent p.T3886T 0.23 TCGA-ZJ-A8QR-01 2 198631291 198631291 G C BOLL Missense_Mutation p.Q185E 0.37 deleterious(0.02) benign(0.333) TCGA-ZJ-A8QR-01 2 202941771 202941771 C G AC079354.1 Intron 0.33 TCGA-ZJ-A8QR-01 2 21225363 21225363 C G APOB Missense_Mutation p.E4311Q 0.09 possibly_damaging(0.688) TCGA-ZJ-A8QR-01 2 36583565 36583565 A T CRIM1 Nonsense_Mutation p.K44* 0.40 TCGA-ZJ-A8QR-01 2 43514122 43514122 C G THADA Missense_Mutation p.E1697Q 0.44 deleterious(0.01) possibly_damaging(0.501) TCGA-ZJ-A8QR-01 2 45640278 45640278 G C SRBD1 Missense_Mutation p.P830A 0.29 deleterious(0.01) probably_damaging(1) TCGA-ZJ-A8QR-01 2 86308819 86308819 C T POLR1A Silent p.L276L 0.30 TCGA-ZJ-A8QR-01 3 100093876 100093876 G A TOMM70A Missense_Mutation p.H405Y 0.31 deleterious(0) probably_damaging(0.989) TCGA-ZJ-A8QR-01 3 100365559 100365559 T C GPR128 Silent p.A419A 0.51 TCGA-ZJ-A8QR-01 3 101060494 101060494 G A SENP7 Nonsense_Mutation p.Q746* 0.36 TCGA-ZJ-A8QR-01 3 137483983 137483983 G A SOX14 Silent p.L119L 0.17 TCGA-ZJ-A8QR-01 3 13860093 13860093 C G WNT7A 3'UTR 0.56 TCGA-ZJ-A8QR-01 3 148757879 148757879 G A HLTF Missense_Mutation p.P814L 0.38 tolerated(0.5) benign(0.049) TCGA-ZJ-A8QR-01 3 150347385 150347385 G A SELT 3'UTR 0.07 TCGA-ZJ-A8QR-01 3 153840359 153840359 G A ARHGEF26 Missense_Mutation p.R193Q 0.34 tolerated_low_confidence(1) benign(0.001) TCGA-ZJ-A8QR-01 3 42167030 42167030 C T TRAK1 Silent p.L70L 0.57 TCGA-ZJ-A8QR-01 3 46014602 46014602 C T FYCO1 Missense_Mutation p.A173T 0.09 deleterious(0.02) benign(0.323) TCGA-ZJ-A8QR-01 3 49728916 49728916 A C RNF123 Missense_Mutation p.E47D 0.16 tolerated_low_confidence(1) benign(0) TCGA-ZJ-A8QR-01 3 49728938 49728938 A G RNF123 Missense_Mutation p.S55G 0.16 tolerated_low_confidence(0.33) benign(0) TCGA-ZJ-A8QR-01 3 63985234 63985234 G A ATXN7 Silent p.%3D 0.35 TCGA-ZJ-A8QR-01 3 9754681 9754681 G A CPNE9 Missense_Mutation p.E190K 0.74 deleterious(0.01) probably_damaging(0.951) TCGA-ZJ-A8QR-01 4 100829936 100829936 C G DNAJB14 Missense_Mutation p.R190T 0.31 deleterious(0.02) possibly_damaging(0.526) TCGA-ZJ-A8QR-01 4 141074872 141074872 G T MAML3 5'UTR 0.25 TCGA-ZJ-A8QR-01 4 164247699 164247699 G A NPY1R Missense_Mutation p.S3L 0.27 tolerated_low_confidence(0.7) benign(0) TCGA-ZJ-A8QR-01 4 187531128 187531128 G A FAT1 Missense_Mutation p.H3299Y 0.40 possibly_damaging(0.799) TCGA-ZJ-A8QR-01 4 187531135 187531135 C G FAT1 Missense_Mutation p.E3296D 0.39 probably_damaging(0.997) TCGA-ZJ-A8QR-01 4 1991447 1991447 G T NELFA Missense_Mutation p.L189M 0.75 deleterious(0) probably_damaging(0.995) TCGA-ZJ-A8QR-01 4 25417094 25417094 G C ANAPC4 Silent p.V611V 0.65 TCGA-ZJ-A8QR-01 5 118506597 118506597 C T DMXL1 Silent p.L2037L 0.44 TCGA-ZJ-A8QR-01 5 140870089 140870089 G A PCDHGC5 Missense_Mutation p.D428N 0.30 deleterious(0) probably_damaging(0.999) TCGA-ZJ-A8QR-01 5 149391862 149391862 C A HMGXB3 Silent p.I285I 0.40 TCGA-ZJ-A8QR-01 5 172560826 172560826 A T CREBRF 3'UTR 0.47 TCGA-ZJ-A8QR-01 5 72144043 72144043 C T TNPO1 Intron 0.53 TCGA-ZJ-A8QR-01 6 119232727 119232727 C G MCM9 Intron 0.27 TCGA-ZJ-A8QR-01 6 127767595 127767596 - C KIAA0408 Frame_Shift_Ins p.Q624Tfs*32 0.55 TCGA-ZJ-A8QR-01 6 26205025 26205025 C G HIST1H4E Missense_Mutation p.I51M 0.33 deleterious(0) probably_damaging(0.941) TCGA-ZJ-A8QR-01 6 33263448 33263448 G A RGL2 Missense_Mutation p.S286F 0.37 deleterious(0) probably_damaging(0.998) TCGA-ZJ-A8QR-01 6 36652126 36652144 GGCGAGGCCGGGATGAGTT - CDKN1A Frame_Shift_Del p.R84Efs*58 0.33 TCGA-ZJ-A8QR-01 6 79735877 79735877 G A PHIP Missense_Mutation p.S202F 0.22 deleterious(0) probably_damaging(0.993) TCGA-ZJ-A8QR-01 7 105752947 105752947 T C SYPL1 Missense_Mutation p.Q10R 0.36 tolerated_low_confidence(0.72) benign(0.003) TCGA-ZJ-A8QR-01 7 107866111 107866111 C T NRCAM Silent p.L252L 0.37 TCGA-ZJ-A8QR-01 7 12728235 12728235 C A ARL4A Missense_Mutation p.T119N 0.04 deleterious(0.03) possibly_damaging(0.773) TCGA-ZJ-A8QR-01 7 148769344 148769344 G C ZNF786 Missense_Mutation p.P174A 0.38 deleterious(0.01) possibly_damaging(0.836) TCGA-ZJ-A8QR-01 7 27135309 27135317 GGTGGCGAT - HOXA1 In_Frame_Del p.H72_H74del 0.18 TCGA-ZJ-A8QR-01 7 62753103 62753103 C G ZNF733P RNA 0.37 TCGA-ZJ-A8QR-01 7 6449395 6449395 C T DAGLB 3'UTR 0.42 TCGA-ZJ-A8QR-01 7 77423231 77423231 G C TMEM60 3'UTR 0.43 TCGA-ZJ-A8QR-01 7 82543857 82543857 C T PCLO Intron 0.42 TCGA-ZJ-A8QR-01 7 88424157 88424157 G A C7orf62 Nonsense_Mutation p.Q34* 0.13 TCGA-ZJ-A8QR-01 7 98645313 98645313 G C SMURF1 Missense_Mutation p.I408M 0.40 deleterious(0) probably_damaging(0.975) TCGA-ZJ-A8QR-01 7 99144432 99144432 C G FAM200A Missense_Mutation p.L533F 0.42 tolerated(0.13) benign(0.059) TCGA-ZJ-A8QR-01 8 101074878 101074878 C T RGS22 Nonsense_Mutation p.W485* 0.37 TCGA-ZJ-A8QR-01 8 101075653 101075653 C G RGS22 Missense_Mutation p.R448T 0.46 deleterious(0) possibly_damaging(0.478) TCGA-ZJ-A8QR-01 8 27101306 27101306 C T STMN4 5'UTR 0.11 TCGA-ZJ-A8QR-01 8 59058752 59058752 G C FAM110B 5'UTR 0.15 TCGA-ZJ-A8QR-01 8 67087441 67087441 C G TRIM55 3'UTR 0.39 TCGA-ZJ-A8QR-01 8 7305486 7305486 A C SPAG11B 3'Flank 0.10 TCGA-ZJ-A8QR-01 8 87623875 87623875 C G CNGB3 Missense_Mutation p.D535H 0.36 deleterious(0) probably_damaging(0.992) TCGA-ZJ-A8QR-01 9 127561655 127561655 C G OLFML2A Missense_Mutation p.S185C 0.26 deleterious(0) probably_damaging(0.993) TCGA-ZJ-A8QR-01 9 37733531 37733531 G A FRMPD1 Missense_Mutation p.D353N 0.31 deleterious(0) probably_damaging(0.991) TCGA-ZJ-A8QR-01 9 92003919 92003919 G C SEMA4D Missense_Mutation p.S273C 0.19 deleterious(0) probably_damaging(1) TCGA-ZJ-A8QR-01 X 100911754 100911754 G A ARMCX2 Missense_Mutation p.A274V 0.34 tolerated_low_confidence(0.09) benign(0.007) TCGA-ZJ-A8QR-01 X 106070674 106070674 G T TBC1D8B Intron 0.38 TCGA-ZJ-A8QR-01 X 106117424 106117424 C T TBC1D8B 3'UTR 0.53 TCGA-ZJ-A8QR-01 X 123234614 123234614 G T STAG2 3'UTR 0.23 TCGA-ZJ-A8QR-01 X 128696673 128696673 G A OCRL Missense_Mutation p.R385K 0.18 deleterious(0) possibly_damaging(0.711) TCGA-ZJ-A8QR-01 X 129055316 129055316 G A UTP14A Missense_Mutation p.M367I 0.34 tolerated(0.36) benign(0.008) TCGA-ZJ-A8QR-01 X 129283492 129283492 C T AIFM1 Missense_Mutation p.G101R 0.22 tolerated(0.44) benign(0.001) TCGA-ZJ-A8QR-01 X 132351604 132351604 G A TFDP3 Silent p.F228F 0.10 TCGA-ZJ-A8QR-01 X 138871629 138871629 C T ATP11C Missense_Mutation p.D412N 0.19 deleterious(0) probably_damaging(0.983) TCGA-ZJ-A8QR-01 X 139099962 139099962 G A RP11-364B14.1 RNA 0.42 TCGA-ZJ-A8QR-01 X 1584834 1584834 G A P2RY8 Silent p.F206F 0.47 TCGA-ZJ-A8QR-01 X 19032091 19032091 G A GPR64 Missense_Mutation p.S271F 0.28 tolerated_low_confidence(0.07) benign(0.031) TCGA-ZJ-A8QR-01 X 30327184 30327184 C T NR0B1 Silent p.A99A 0.30 TCGA-ZJ-A8QR-01 X 32408281 32408281 C G DMD Missense_Mutation p.L1417F 0.47 probably_damaging(0.943) TCGA-ZJ-A8QR-01 X 41091690 41091690 G A USP9X Missense_Mutation p.M2542I 0.39 tolerated_low_confidence(0.13) benign(0.001) TCGA-ZJ-A8QR-01 X 49143158 49143158 C T PPP1R3F Missense_Mutation p.A669V 0.07 tolerated_low_confidence(0.19) benign(0.002) TCGA-ZJ-A8QR-01 X 51486509 51486509 C T GSPT2 5'UTR 0.12 TCGA-ZJ-A8QR-01 X 65392239 65392239 G C HEPH Silent p.G124G 0.25 TCGA-ZJ-A8QR-01 X 79936860 79936860 C G BRWD3 Missense_Mutation p.R1545T 0.17 tolerated_low_confidence(0.15) benign(0.15) TCGA-ZJ-A8QR-01 X 79989646 79989646 C A BRWD3 Nonsense_Mutation p.E353* 0.57 TCGA-ZJ-A8QR-01 X 91133375 91133375 T C PCDH11X Silent p.R712R 0.17 TCGA-ZJ-AAX4-01 10 116070120 116070120 C A AFAP1L2 Missense_Mutation p.C292F 0.37 deleterious(0.04) benign(0.18) TCGA-ZJ-AAX4-01 10 121334358 121334358 T A TIAL1 3'UTR 0.62 TCGA-ZJ-AAX4-01 10 47701112 47701112 A T ANTXRL Missense_Mutation p.Y563F 0.77 tolerated(0.66) benign(0.302) TCGA-ZJ-AAX4-01 11 18764565 18764565 C T PTPN5 Missense_Mutation p.V153M 0.13 deleterious(0.04) benign(0.02) TCGA-ZJ-AAX4-01 11 64527283 64527283 T C PYGM Missense_Mutation p.K30E 0.31 tolerated(0.24) benign(0.03) TCGA-ZJ-AAX4-01 11 7021713 7021713 G T ZNF214 Missense_Mutation p.L401I 0.19 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAX4-01 11 72396625 72396625 C T ARAP1 3'UTR 0.26 TCGA-ZJ-AAX4-01 11 994200 994200 C T AP2A2 Silent p.D637D 0.57 TCGA-ZJ-AAX4-01 12 104069703 104069703 C A STAB2 Intron 0.24 TCGA-ZJ-AAX4-01 12 122079083 122079083 A G ORAI1 Missense_Mutation p.N149S 0.25 deleterious(0) probably_damaging(0.997) TCGA-ZJ-AAX4-01 12 13715805 13715805 A T GRIN2B Missense_Mutation p.V1456E 0.15 deleterious(0.01) benign(0.239) TCGA-ZJ-AAX4-01 12 33529538 33529538 C G SYT10 3'UTR 0.38 TCGA-ZJ-AAX4-01 12 55688645 55688645 G A OR6C6 Silent p.I124I 0.18 TCGA-ZJ-AAX4-01 12 55726008 55726008 C A OR6C3 Missense_Mutation p.A175E 0.19 tolerated_low_confidence(0.25) possibly_damaging(0.606) TCGA-ZJ-AAX4-01 13 111293866 111293866 C T CARS2 3'UTR 0.60 TCGA-ZJ-AAX4-01 14 104644126 104644126 C T KIF26A Silent p.S1667S 0.40 TCGA-ZJ-AAX4-01 14 37203744 37203744 T C SLC25A21 Missense_Mutation p.I80V 0.47 tolerated(0.08) benign(0.12) TCGA-ZJ-AAX4-01 15 41775303 41775303 A G RTF1 3'UTR 0.38 TCGA-ZJ-AAX4-01 15 43815079 43815079 G A MAP1A Missense_Mutation p.E470K 0.14 probably_damaging(0.997) TCGA-ZJ-AAX4-01 15 56923910 56923910 T C ZNF280D Missense_Mutation p.D909G 0.47 deleterious(0.05) probably_damaging(0.999) TCGA-ZJ-AAX4-01 15 60297485 60297485 G A FOXB1 Missense_Mutation p.R108H 0.38 deleterious(0) probably_damaging(0.995) TCGA-ZJ-AAX4-01 15 72172099 72172099 C T MYO9A Missense_Mutation p.R1901Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAX4-01 15 91543173 91543173 A G VPS33B Silent p.D538D 0.14 TCGA-ZJ-AAX4-01 16 29826629 29826629 C T PRRT2 3'Flank 0.40 TCGA-ZJ-AAX4-01 16 29828198 29828198 C T PAGR1 Silent p.L118L 0.59 TCGA-ZJ-AAX4-01 17 30801825 30801825 C T PSMD11 Missense_Mutation p.R278W 0.21 deleterious(0) probably_damaging(0.918) TCGA-ZJ-AAX4-01 17 39977264 39977264 C T FKBP10 Missense_Mutation p.T441M 0.18 tolerated(0.28) benign(0.351) TCGA-ZJ-AAX4-01 17 40265817 40265817 C T KAT2A Silent p.V788V 0.21 TCGA-ZJ-AAX4-01 17 73887390 73887390 G A TRIM65 Missense_Mutation p.R342C 0.47 tolerated(0.09) benign(0.022) TCGA-ZJ-AAX4-01 17 7411742 7411742 C T POLR2A Missense_Mutation p.S1138L 0.07 probably_damaging(0.997) TCGA-ZJ-AAX4-01 17 7475224 7475224 T A SENP3 Intron 0.15 TCGA-ZJ-AAX4-01 17 9515666 9515666 C A WDR16 Silent p.R299R 0.41 TCGA-ZJ-AAX4-01 18 24126907 24126907 G A KCTD1 Intron 0.48 TCGA-ZJ-AAX4-01 19 42470787 42470787 A T ATP1A3 3'UTR 0.43 TCGA-ZJ-AAX4-01 19 42840403 42840403 C T MEGF8 Silent p.G383G 0.38 TCGA-ZJ-AAX4-01 19 45571688 45571688 C T CLASRP Missense_Mutation p.T573M 0.29 deleterious(0) unknown(0) TCGA-ZJ-AAX4-01 19 52618743 52618743 G A ZNF616 Silent p.F558F 0.33 TCGA-ZJ-AAX4-01 19 7987395 7987395 G A SNAPC2 Missense_Mutation p.A251T 0.57 tolerated(0.07) benign(0.305) TCGA-ZJ-AAX4-01 1 111660360 111660360 G T DRAM2 3'UTR 0.31 TCGA-ZJ-AAX4-01 1 152324053 152324053 C T FLG2 Missense_Mutation p.G2070E 0.16 benign(0.118) TCGA-ZJ-AAX4-01 1 201122977 201122977 C T TMEM9 Intron 0.47 TCGA-ZJ-AAX4-01 1 222761797 222761797 C A TAF1A Missense_Mutation p.V37L 0.29 tolerated(1) benign(0.003) TCGA-ZJ-AAX4-01 1 236912514 236912514 A G ACTN2 Missense_Mutation p.M536V 0.36 tolerated(0.29) benign(0.007) TCGA-ZJ-AAX4-01 1 249142474 249142474 C T ZNF672 Missense_Mutation p.T334M 0.16 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAX4-01 1 5951051 5951051 A T NPHP4 Silent p.P727P 0.31 TCGA-ZJ-AAX4-01 1 66087113 66087113 C G LEPR Missense_Mutation p.L857V 0.51 deleterious(0) possibly_damaging(0.529) TCGA-ZJ-AAX4-01 1 74506969 74506969 C A LRRIQ3 Missense_Mutation p.S549I 0.10 tolerated(0.41) benign(0.007) TCGA-ZJ-AAX4-01 1 93827462 93827462 G C DR1 3'UTR 0.41 TCGA-ZJ-AAX4-01 20 3673259 3673259 C T SIGLEC1 Silent p.V1313V 0.83 TCGA-ZJ-AAX4-01 22 24176393 24176393 C T SMARCB1 3'UTR 0.50 TCGA-ZJ-AAX4-01 2 135625179 135625179 G A ACMSD Missense_Mutation p.V173M 0.32 deleterious(0) probably_damaging(0.981) TCGA-ZJ-AAX4-01 2 216986967 216986967 A T XRCC5 Missense_Mutation p.Y225F 0.69 tolerated(0.11) possibly_damaging(0.634) TCGA-ZJ-AAX4-01 2 220501049 220501049 C T SLC4A3 Silent p.G766G 0.68 TCGA-ZJ-AAX4-01 2 27477659 27477659 C G SLC30A3 3'UTR 0.13 TCGA-ZJ-AAX4-01 2 29294301 29294301 G A C2orf71 Nonsense_Mutation p.Q943* 0.39 TCGA-ZJ-AAX4-01 2 74593440 74593440 G A DCTN1 Silent p.I897I 0.26 TCGA-ZJ-AAX4-01 3 111795811 111795811 G A TMPRSS7 Missense_Mutation p.V556I 0.38 tolerated(0.18) benign(0.017) TCGA-ZJ-AAX4-01 3 134251700 134251700 G A CEP63 Silent p.R133R 0.46 TCGA-ZJ-AAX4-01 3 150177387 150177387 T A TSC22D2 3'UTR 0.09 TCGA-ZJ-AAX4-01 3 17053486 17053486 G A PLCL2 Missense_Mutation p.R757Q 0.34 tolerated(0.09) benign(0.332) TCGA-ZJ-AAX4-01 3 96706413 96706413 C T EPHA6 Silent p.H230H 0.40 TCGA-ZJ-AAX4-01 4 1941196 1941196 C A WHSC1 Intron 0.26 TCGA-ZJ-AAX4-01 5 145890192 145890192 G A TCERG1 Missense_Mutation p.R1095Q 0.24 deleterious(0) unknown(0) TCGA-ZJ-AAX4-01 5 146798152 146798152 G A DPYSL3 Silent p.T171T 0.26 TCGA-ZJ-AAX4-01 5 23526873 23526873 G A PRDM9 Missense_Mutation p.R559Q 0.14 tolerated(0.29) probably_damaging(0.999) TCGA-ZJ-AAX4-01 5 31409179 31409179 C T DROSHA Missense_Mutation p.D1280N 0.18 deleterious(0) probably_damaging(0.978) TCGA-ZJ-AAX4-01 5 74491691 74491691 G A ANKRD31 Missense_Mutation p.S261F 0.09 deleterious(0) possibly_damaging(0.849) TCGA-ZJ-AAX4-01 6 11200586 11200586 G A NEDD9 Intron 0.06 TCGA-ZJ-AAX4-01 6 167570634 167570634 A G GPR31 Missense_Mutation p.V229A 0.71 tolerated(0.06) benign(0.123) TCGA-ZJ-AAX4-01 6 31777681 31777681 G T HSPA1L 3'UTR 0.80 TCGA-ZJ-AAX4-01 6 76618318 76618318 G A MYO6 Missense_Mutation p.R1129H 0.88 deleterious(0.02) probably_damaging(0.995) TCGA-ZJ-AAX4-01 7 121756697 121756697 A T AASS Missense_Mutation p.F295Y 0.39 deleterious(0) probably_damaging(0.969) TCGA-ZJ-AAX4-01 7 133314806 133314806 G A EXOC4 Missense_Mutation p.D476N 0.19 tolerated(0.09) possibly_damaging(0.882) TCGA-ZJ-AAX4-01 7 139138908 139138908 C T KLRG2 Missense_Mutation p.R353Q 0.19 deleterious(0.02) probably_damaging(0.983) TCGA-ZJ-AAX4-01 7 99220191 99220191 G A ZSCAN25 Silent p.A203A 0.20 TCGA-ZJ-AAX4-01 8 101245703 101245703 C A SPAG1 Missense_Mutation p.Q685K 0.38 tolerated(0.24) benign(0.129) TCGA-ZJ-AAX4-01 8 124333358 124333358 C T ATAD2 3'UTR 0.14 TCGA-ZJ-AAX4-01 8 15967552 15967552 T G MSR1 3'UTR 0.34 TCGA-ZJ-AAX4-01 8 2017609 2017609 G A MYOM2 Silent p.P262P 0.26 TCGA-ZJ-AAX4-01 8 77766792 77766792 G A ZFHX4 Silent p.P2545P 0.21 TCGA-ZJ-AAX4-01 8 92972720 92972720 G A RUNX1T1 Missense_Mutation p.A533V 0.32 deleterious(0.01) probably_damaging(0.949) TCGA-ZJ-AAX4-01 8 98738466 98738466 A C MTDH 3'UTR 0.48 TCGA-ZJ-AAX4-01 9 117798492 117798492 C T TNC Silent p.G1847G 0.29 TCGA-ZJ-AAX4-01 9 119567940 119567940 G A ASTN2 Silent p.N738N 0.18 TCGA-ZJ-AAX4-01 9 135983567 135983567 T C RALGDS Silent p.L335L 0.50 TCGA-ZJ-AAX4-01 9 14102507 14102507 C A NFIB Intron 0.30 TCGA-ZJ-AAX4-01 X 131351543 131351543 C T RAP2C 5'UTR 0.29 TCGA-ZJ-AAX4-01 X 135956617 135956617 G A RBMX Intron 0.54 TCGA-ZJ-AAX4-01 X 19413249 19413249 G C MAP3K15 Missense_Mutation p.S715C 0.13 deleterious(0) probably_damaging(1) TCGA-ZJ-AAX4-01 X 67945440 67945440 G A STARD8 3'UTR 0.04 TCGA-ZJ-AAX4-01 X 70351422 70351422 G A MED12 Missense_Mutation p.R1357H 0.33 probably_damaging(0.916) TCGA-ZJ-AAX4-01 X 83359573 83359573 C T RPS6KA6 Silent p.S516S 0.19 TCGA-ZJ-AAX8-01 10 105331479 105331479 C T NEURL1 Silent p.N183N 0.06 TCGA-ZJ-AAX8-01 10 11535164 11535164 G A USP6NL Missense_Mutation p.R167C 0.17 deleterious(0) probably_damaging(1) TCGA-ZJ-AAX8-01 10 129902123 129902123 G T MKI67 Missense_Mutation p.P2661T 0.22 tolerated(0.73) possibly_damaging(0.61) TCGA-ZJ-AAX8-01 10 129906313 129906313 C A MKI67 Missense_Mutation p.S1264I 0.11 deleterious(0) probably_damaging(0.925) TCGA-ZJ-AAX8-01 10 25465018 25465018 C T GPR158 Silent p.F223F 0.09 TCGA-ZJ-AAX8-01 10 25465138 25465138 C G GPR158 Missense_Mutation p.F263L 0.06 tolerated(0.08) benign(0) TCGA-ZJ-AAX8-01 10 43019132 43019132 G A ZNF37BP RNA 0.14 TCGA-ZJ-AAX8-01 10 56423981 56423981 C T PCDH15 Silent p.G14G 0.21 TCGA-ZJ-AAX8-01 10 71154845 71154845 C T HK1 Missense_Mutation p.L791F 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAX8-01 10 73501461 73501461 G A CDH23 Missense_Mutation p.G1548E 0.31 tolerated(0.2) probably_damaging(0.998) TCGA-ZJ-AAX8-01 10 77158084 77158084 C T ZNF503 3'UTR 0.15 TCGA-ZJ-AAX8-01 10 93038606 93038606 G C PCGF5 3'UTR 0.07 TCGA-ZJ-AAX8-01 11 111922046 111922046 C T DLAT Missense_Mutation p.S496F 0.23 deleterious(0) probably_damaging(1) TCGA-ZJ-AAX8-01 11 57281462 57281462 C T SLC43A1 Silent p.K41K 0.22 TCGA-ZJ-AAX8-01 12 120899807 120899807 T A SRSF9 3'UTR 0.19 TCGA-ZJ-AAX8-01 12 49420409 49420409 G A KMT2D Missense_Mutation p.H5114Y 0.33 unknown(0) TCGA-ZJ-AAX8-01 13 101760062 101760062 C G NALCN Missense_Mutation p.A815P 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAX8-01 13 108881891 108881891 G A ABHD13 Missense_Mutation p.D109N 0.09 tolerated(0.32) benign(0.008) TCGA-ZJ-AAX8-01 13 21732165 21732165 C G SKA3 Missense_Mutation p.E339Q 0.22 tolerated(0.15) benign(0.133) TCGA-ZJ-AAX8-01 14 103600024 103600024 C T TNFAIP2 Silent p.S569S 0.20 TCGA-ZJ-AAX8-01 14 39639223 39639223 T C TRAPPC6B Missense_Mutation p.E26G 0.08 tolerated(0.17) benign(0.007) TCGA-ZJ-AAX8-01 14 59792443 59792443 G C DAAM1 Missense_Mutation p.E351Q 0.08 deleterious(0.01) unknown(0) TCGA-ZJ-AAX8-01 14 95035793 95035793 G C SERPINA4 Missense_Mutation p.S382T 0.19 tolerated(0.57) possibly_damaging(0.741) TCGA-ZJ-AAX8-01 15 34129900 34129900 G C RYR3 Missense_Mutation p.E3907Q 0.12 possibly_damaging(0.677) TCGA-ZJ-AAX8-01 15 45545669 45545669 G A SLC28A2 Missense_Mutation p.A41T 0.15 tolerated(0.55) benign(0) TCGA-ZJ-AAX8-01 16 1116376 1116376 G A RP11-161M6.5 RNA 0.40 TCGA-ZJ-AAX8-01 16 12371863 12371863 C G SNX29 Silent p.L584L 0.12 TCGA-ZJ-AAX8-01 16 84691130 84691130 C T KLHL36 Silent p.L239L 0.15 TCGA-ZJ-AAX8-01 17 1380822 1380822 G A MYO1C Silent p.V517V 0.18 TCGA-ZJ-AAX8-01 17 27277189 27277189 G A PHF12 Missense_Mutation p.R48W 0.11 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAX8-01 17 45452284 45452284 C G EFCAB13 Missense_Mutation p.L442V 0.26 tolerated(0.17) possibly_damaging(0.597) TCGA-ZJ-AAX8-01 17 46673934 46673934 C A HOXB6 Silent p.T172T 0.11 TCGA-ZJ-AAX8-01 17 70118866 70118866 G A SOX9 Silent p.L146L 0.15 TCGA-ZJ-AAX8-01 18 65182450 65182450 C T DSEL 5'UTR 0.20 TCGA-ZJ-AAX8-01 19 12223521 12223521 G A ZNF788 Missense_Mutation p.E387K 0.12 deleterious(0.03) benign(0.006) TCGA-ZJ-AAX8-01 19 13251751 13251751 C G NACC1 3'UTR 0.19 TCGA-ZJ-AAX8-01 19 14230441 14230441 G A ASF1B 3'UTR 0.15 TCGA-ZJ-AAX8-01 19 35829122 35829122 G A CD22 Missense_Mutation p.G346E 0.17 tolerated(0.05) possibly_damaging(0.896) TCGA-ZJ-AAX8-01 19 41245400 41245400 G T ITPKC Nonsense_Mutation p.E663* 0.20 TCGA-ZJ-AAX8-01 19 41949138 41949138 C T C19orf69 Nonsense_Mutation p.Q22* 0.18 TCGA-ZJ-AAX8-01 19 4323755 4323755 G A FSD1 3'UTR 0.12 TCGA-ZJ-AAX8-01 19 49714287 49714287 G A TRPM4 Silent p.L1159L 0.14 TCGA-ZJ-AAX8-01 19 51380274 51380274 C T KLK2 Intron 0.14 TCGA-ZJ-AAX8-01 19 52937307 52937307 G A ZNF534 Missense_Mutation p.E39K 0.09 deleterious(0.01) probably_damaging(0.945) TCGA-ZJ-AAX8-01 19 5653179 5653179 C A SAFB Nonsense_Mutation p.Y449* 0.18 TCGA-ZJ-AAX8-01 19 57839571 57839571 C T ZNF543 Silent p.I247I 0.14 TCGA-ZJ-AAX8-01 19 6141521 6141521 C T ACSBG2 Intron 0.14 TCGA-ZJ-AAX8-01 1 150483923 150483923 C T ECM1 Intron 0.18 TCGA-ZJ-AAX8-01 1 150772130 150772130 C T CTSK Missense_Mutation p.R225K 0.31 tolerated(0.39) benign(0) TCGA-ZJ-AAX8-01 1 26451818 26451818 C T PDIK1L 3'UTR 0.14 TCGA-ZJ-AAX8-01 1 31769482 31769482 C A SNRNP40 Silent p.A39A 0.17 TCGA-ZJ-AAX8-01 1 33324032 33324032 G A S100PBP 3'UTR 0.20 TCGA-ZJ-AAX8-01 1 35228871 35228871 G - GJB4 3'UTR 0.18 TCGA-ZJ-AAX8-01 1 68947193 68947193 C T DEPDC1 Missense_Mutation p.R622H 0.11 deleterious(0) probably_damaging(0.968) TCGA-ZJ-AAX8-01 1 701750 701750 G C RP11-206L10.2 RNA 0.07 TCGA-ZJ-AAX8-01 20 31590401 31590401 C A SUN5 Missense_Mutation p.G68V 0.16 deleterious(0) possibly_damaging(0.462) TCGA-ZJ-AAX8-01 20 33864350 33864350 G A MMP24 3'UTR 0.24 TCGA-ZJ-AAX8-01 20 33864603 33864603 G A MMP24 3'UTR 0.26 TCGA-ZJ-AAX8-01 20 44692032 44692032 G A NCOA5 Missense_Mutation p.R373W 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAX8-01 20 47864551 47864551 C A ZNFX1 Missense_Mutation p.R1670S 0.25 tolerated(0.63) benign(0) TCGA-ZJ-AAX8-01 20 57429359 57429359 G A GNAS Missense_Mutation p.E347K 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-ZJ-AAX8-01 22 21330979 21330979 C T AIFM3 Missense_Mutation p.S357F 0.18 deleterious(0) probably_damaging(0.99) TCGA-ZJ-AAX8-01 22 22931108 22931108 C T IGLV2-33 Silent p.S101S 0.20 TCGA-ZJ-AAX8-01 2 128381783 128381783 G A MYO7B Missense_Mutation p.R1286Q 0.23 deleterious(0) possibly_damaging(0.899) TCGA-ZJ-AAX8-01 2 38908485 38908485 G A GALM Missense_Mutation p.E137K 0.16 deleterious(0) probably_damaging(0.947) TCGA-ZJ-AAX8-01 2 56420319 56420319 C T CCDC85A Silent p.H328H 0.17 TCGA-ZJ-AAX8-01 3 160942754 160942754 T C NMD3 Silent p.N27N 0.43 TCGA-ZJ-AAX8-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.45 deleterious(0.04) probably_damaging(0.96) TCGA-ZJ-AAX8-01 3 195016492 195016492 C T ACAP2 Silent p.L539L 0.54 TCGA-ZJ-AAX8-01 3 52598088 52598088 C T PBRM1 Missense_Mutation p.D1260N 0.15 deleterious(0.01) possibly_damaging(0.728) TCGA-ZJ-AAX8-01 3 9519338 9519338 C T SETD5 3'UTR 0.11 TCGA-ZJ-AAX8-01 4 152571298 152571298 C A FAM160A1 Nonsense_Mutation p.S702* 0.14 TCGA-ZJ-AAX8-01 4 22517284 22517284 C A GPR125 Missense_Mutation p.G42C 0.07 tolerated(0.1) unknown(0) TCGA-ZJ-AAX8-01 4 56345096 56345096 C T CLOCK Missense_Mutation p.D48N 0.11 deleterious(0) probably_damaging(0.997) TCGA-ZJ-AAX8-01 4 75937905 75937905 C T PARM1 Missense_Mutation p.S105L 0.35 tolerated(0.05) possibly_damaging(0.675) TCGA-ZJ-AAX8-01 4 89186281 89186281 G A PPM1K Missense_Mutation p.H287Y 0.13 deleterious(0) possibly_damaging(0.907) TCGA-ZJ-AAX8-01 4 99579453 99579453 G T TSPAN5 5'UTR 0.23 TCGA-ZJ-AAX8-01 5 118560465 118560465 G - DMXL1 Splice_Site p.X2759_splice 0.09 TCGA-ZJ-AAX8-01 5 1815985 1815995 CACATGCGGTT - NDUFS6 Frame_Shift_Del p.T111Lfs*24 0.37 TCGA-ZJ-AAX8-01 5 31299659 31299659 G A CDH6 Silent p.Q244Q 0.34 TCGA-ZJ-AAX8-01 5 413492 413492 G C AHRR Missense_Mutation p.E133Q 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-ZJ-AAX8-01 6 160677703 160677703 G A SLC22A2 Missense_Mutation p.S154L 0.32 deleterious(0.01) possibly_damaging(0.864) TCGA-ZJ-AAX8-01 6 87967251 87967251 G A ZNF292 Missense_Mutation p.E1302K 0.29 tolerated(0.22) benign(0.423) TCGA-ZJ-AAX8-01 7 100161890 100161890 G T AGFG2 Silent p.L450L 0.20 TCGA-ZJ-AAX8-01 7 100162992 100162992 G A AGFG2 3'UTR 0.20 TCGA-ZJ-AAX8-01 7 112723063 112723063 A - GPR85 3'UTR 0.25 TCGA-ZJ-AAX8-01 7 117305611 117305611 A G CFTR Missense_Mutation p.Q1412R 0.14 tolerated(1) benign(0) TCGA-ZJ-AAX8-01 7 129396820 129396820 G C NRF1 3'UTR 0.15 TCGA-ZJ-AAX8-01 7 27239669 27239669 G - HOXA13 Frame_Shift_Del p.R10Afs*81 0.10 TCGA-ZJ-AAX8-01 7 73246019 73246019 C A CLDN4 Nonsense_Mutation p.S163* 0.17 TCGA-ZJ-AAX8-01 7 75141703 75141703 A C Y_RNA 3'Flank 0.21 TCGA-ZJ-AAX8-01 8 124358462 124358462 C G ATAD2 Missense_Mutation p.G799A 0.19 deleterious(0.01) probably_damaging(0.953) TCGA-ZJ-AAX8-01 8 145154734 145154734 C T SHARPIN Silent p.G177G 0.19 TCGA-ZJ-AAX8-01 8 19315231 19315231 C T CSGALNACT1 Intron 0.18 TCGA-ZJ-AAX8-01 8 68107760 68107760 G C CSPP1 Missense_Mutation p.E1200Q 0.15 tolerated(0.08) benign(0.187) TCGA-ZJ-AAX8-01 8 91636793 91636793 G C TMEM64 3'UTR 0.15 TCGA-ZJ-AAX8-01 9 114685160 114685160 A C UGCG Missense_Mutation p.D91A 0.15 tolerated(0.29) benign(0.269) TCGA-ZJ-AAX8-01 9 95474021 95474021 G A BICD2 3'UTR 0.15 TCGA-ZJ-AAX8-01 X 101909218 101909218 C G GPRASP1 Missense_Mutation p.S126C 0.11 deleterious(0.04) benign(0.111) TCGA-ZJ-AAX8-01 X 119760722 119760722 G A C1GALT1C1 Silent p.F100F 0.22 TCGA-ZJ-AAX8-01 X 129159306 129159306 G A BCORL1 Missense_Mutation p.E1344K 0.17 probably_damaging(0.997) TCGA-ZJ-AAX8-01 X 133904759 133904759 T A FAM122B 3'UTR 0.23 TCGA-ZJ-AAX8-01 X 79932691 79932691 A C BRWD3 Nonsense_Mutation p.L1609* 0.10 TCGA-ZJ-AAX8-01 X 79932704 79932704 C G BRWD3 Missense_Mutation p.E1605Q 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.453) TCGA-ZJ-AAXA-01 10 102778727 102778727 G A PDZD7 Silent p.L392L 0.35 TCGA-ZJ-AAXA-01 10 106074526 106074526 G A ITPRIP Silent p.L428L 0.76 TCGA-ZJ-AAXA-01 10 5808064 5808064 C T GDI2 Missense_Mutation p.D415N 0.60 tolerated(0.29) benign(0.004) TCGA-ZJ-AAXA-01 10 76790116 76790116 A G KAT6B Missense_Mutation p.N1845S 0.57 probably_damaging(0.986) TCGA-ZJ-AAXA-01 11 111425934 111425934 G A LAYN Missense_Mutation p.E201K 0.55 tolerated(0.61) benign(0.027) TCGA-ZJ-AAXA-01 11 56237674 56237674 G A OR5M3 Silent p.F100F 0.45 TCGA-ZJ-AAXA-01 11 6741943 6741943 T C GVINP1 RNA 0.57 TCGA-ZJ-AAXA-01 11 77937574 77937574 C A GAB2 Missense_Mutation p.V382F 0.44 tolerated(0.66) benign(0.035) TCGA-ZJ-AAXA-01 12 112143594 112143594 G A ACAD10 Missense_Mutation p.R130Q 0.27 tolerated(1) benign(0.003) TCGA-ZJ-AAXA-01 12 49729926 49729926 A C C1QL4 Missense_Mutation p.F112C 0.17 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXA-01 12 56965516 56965516 C G RBMS2 Nonsense_Mutation p.S140* 0.35 TCGA-ZJ-AAXA-01 12 96412625 96412625 C T LTA4H Silent p.Q256Q 0.65 TCGA-ZJ-AAXA-01 13 25861462 25861462 G A MTMR6 5'UTR 0.49 TCGA-ZJ-AAXA-01 14 29241997 29241997 C T C14orf23 5'UTR 0.32 TCGA-ZJ-AAXA-01 14 61449262 61449262 G C SLC38A6 Missense_Mutation p.G48R 0.35 deleterious(0.01) probably_damaging(0.965) TCGA-ZJ-AAXA-01 14 79434626 79434626 C T NRXN3 Missense_Mutation p.R654C 0.39 deleterious(0) probably_damaging(0.979) TCGA-ZJ-AAXA-01 15 35274026 35274026 A G ZNF770 Missense_Mutation p.V537A 0.48 tolerated(0.12) benign(0.003) TCGA-ZJ-AAXA-01 15 92459310 92459310 C T SLCO3A1 Silent p.L90L 0.54 TCGA-ZJ-AAXA-01 16 15690725 15690725 G A KIAA0430 Missense_Mutation p.S1685F 0.30 deleterious(0.02) possibly_damaging(0.575) TCGA-ZJ-AAXA-01 16 20873557 20873557 G A DCUN1D3 Missense_Mutation p.R102W 0.13 tolerated(0.23) benign(0.005) TCGA-ZJ-AAXA-01 16 71764029 71764029 G A AP1G1 3'Flank 0.09 TCGA-ZJ-AAXA-01 16 89341357 89341357 C T ANKRD11 Silent p.L2526L 0.31 TCGA-ZJ-AAXA-01 17 3563536 3563539 GGAC - CTNS Frame_Shift_Del p.W326Cfs*2 0.46 TCGA-ZJ-AAXA-01 17 38436874 38436874 G C WIPF2 3'UTR 0.26 TCGA-ZJ-AAXA-01 17 38437105 38437105 G T WIPF2 3'UTR 0.25 TCGA-ZJ-AAXA-01 17 38437242 38437242 G A WIPF2 3'UTR 0.38 TCGA-ZJ-AAXA-01 17 49118866 49118866 A G SPAG9 Missense_Mutation p.L246P 0.39 tolerated(0.05) probably_damaging(0.986) TCGA-ZJ-AAXA-01 17 77082075 77082075 C G ENGASE Missense_Mutation p.H626D 0.69 tolerated(0.96) benign(0.009) TCGA-ZJ-AAXA-01 18 40323538 40323538 C T RIT2 Missense_Mutation p.E192K 0.22 tolerated(0.16) benign(0.043) TCGA-ZJ-AAXA-01 18 74592219 74592219 C T ZNF236 Nonsense_Mutation p.Q377* 0.45 TCGA-ZJ-AAXA-01 19 11558289 11558289 T C PRKCSH Silent p.P295P 0.20 TCGA-ZJ-AAXA-01 19 17132877 17132877 C T CPAMD8 Silent p.Q116Q 0.18 TCGA-ZJ-AAXA-01 19 37309798 37309798 C T ZNF790 Missense_Mutation p.C483Y 0.22 deleterious(0) benign(0.443) TCGA-ZJ-AAXA-01 19 44833349 44833349 C T ZNF112 Missense_Mutation p.E327K 0.25 tolerated(0.78) benign(0.01) TCGA-ZJ-AAXA-01 19 46095734 46095734 G C GPR4 5'UTR 0.23 TCGA-ZJ-AAXA-01 19 4941939 4941939 G A UHRF1 RNA 0.35 TCGA-ZJ-AAXA-01 19 49551549 49551549 G A CGB8 Silent p.I32I 0.21 TCGA-ZJ-AAXA-01 19 51330344 51330344 G A KLK15 Missense_Mutation p.R91W 0.26 deleterious(0.03) probably_damaging(0.912) TCGA-ZJ-AAXA-01 19 51480767 51480767 C T KLK7 3'UTR 0.23 TCGA-ZJ-AAXA-01 19 51480856 51480856 C T KLK7 Missense_Mutation p.G233E 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-ZJ-AAXA-01 19 51920491 51920491 C A SIGLEC10 Missense_Mutation p.R89L 0.22 deleterious(0) probably_damaging(0.996) TCGA-ZJ-AAXA-01 19 647917 647917 G - RNF126 3'UTR 0.11 TCGA-ZJ-AAXA-01 19 808358 808358 A T PTBP1 Splice_Site p.X385_splice 0.11 TCGA-ZJ-AAXA-01 1 12628431 12628431 C T DHRS3 Missense_Mutation p.E283K 0.23 tolerated(0.93) benign(0.105) TCGA-ZJ-AAXA-01 1 145304515 145304515 C G NBPF10 Nonsense_Mutation p.S483* 0.14 TCGA-ZJ-AAXA-01 1 149288091 149288091 C T RP11-403I13.8 RNA 0.06 TCGA-ZJ-AAXA-01 1 150686587 150686587 A G HORMAD1 Missense_Mutation p.C85R 0.35 deleterious(0) probably_damaging(0.983) TCGA-ZJ-AAXA-01 1 152276800 152276800 G A FLG Missense_Mutation p.S3521F 0.38 unknown(0) TCGA-ZJ-AAXA-01 1 153657516 153657516 G A NPR1 Missense_Mutation p.E521K 0.24 tolerated(0.2) benign(0.184) TCGA-ZJ-AAXA-01 1 158619695 158619695 C A SPTA1 Nonsense_Mutation p.E1174* 0.34 TCGA-ZJ-AAXA-01 1 159505270 159505270 G A OR10J5 Silent p.F176F 0.39 TCGA-ZJ-AAXA-01 1 180034352 180034352 G A CEP350 Missense_Mutation p.E1838K 0.29 probably_damaging(0.999) TCGA-ZJ-AAXA-01 1 181701715 181701715 G A CACNA1E Silent p.R831R 0.27 TCGA-ZJ-AAXA-01 1 182025618 182025618 C T ZNF648 Missense_Mutation p.G510S 0.17 deleterious(0.03) possibly_damaging(0.68) TCGA-ZJ-AAXA-01 1 222805626 222805626 G A MIA3 Missense_Mutation p.E1097K 0.24 deleterious(0.05) benign(0.293) TCGA-ZJ-AAXA-01 1 230468756 230468756 C T PGBD5 Silent p.R300R 0.28 TCGA-ZJ-AAXA-01 1 27875357 27875357 G A AHDC1 Silent p.S1090S 0.17 TCGA-ZJ-AAXA-01 1 28887893 28887893 G T TRNAU1AP Silent p.G87G 0.31 TCGA-ZJ-AAXA-01 1 36029001 36029001 C T NCDN Silent p.L528L 0.31 TCGA-ZJ-AAXA-01 1 6500417 6500417 G C ESPN Missense_Mutation p.D198H 0.42 deleterious(0.01) possibly_damaging(0.879) TCGA-ZJ-AAXA-01 1 6593395 6593395 G A NOL9 Silent p.F394F 0.31 TCGA-ZJ-AAXA-01 1 70881636 70881636 C - CTH Intron 0.11 TCGA-ZJ-AAXA-01 20 20029078 20029078 C T CRNKL1 Missense_Mutation p.A283T 0.23 tolerated(0.23) possibly_damaging(0.846) TCGA-ZJ-AAXA-01 20 34219217 34219217 A T CPNE1 Silent p.S263S 0.26 TCGA-ZJ-AAXA-01 22 19766865 19766865 G A GNB1L 3'Flank 0.36 TCGA-ZJ-AAXA-01 22 38610690 38610690 G A MAFF Missense_Mutation p.M100I 0.69 deleterious(0.03) probably_damaging(0.968) TCGA-ZJ-AAXA-01 22 42538600 42538600 C G NDUFA6-AS1 3'Flank 0.51 TCGA-ZJ-AAXA-01 2 203846363 203846363 C G CARF Silent p.L548L 0.47 TCGA-ZJ-AAXA-01 2 234601667 234601667 G A UGT1A6 Missense_Mutation p.R6H 0.36 tolerated(0.46) benign(0.002) TCGA-ZJ-AAXA-01 2 26204298 26204298 C T KIF3C Silent p.K163K 0.50 TCGA-ZJ-AAXA-01 2 26707346 26707346 C T OTOF Missense_Mutation p.E401K 0.46 deleterious(0) probably_damaging(0.96) TCGA-ZJ-AAXA-01 3 113347157 113347157 C A SIDT1 3'UTR 0.23 TCGA-ZJ-AAXA-01 3 113464966 113464966 G C NAA50 5'UTR 0.22 TCGA-ZJ-AAXA-01 3 138014801 138014801 C G ARMC8 3'UTR 0.14 TCGA-ZJ-AAXA-01 3 142499740 142499740 C T TRPC1 Missense_Mutation p.R277W 0.37 deleterious(0) probably_damaging(0.997) TCGA-ZJ-AAXA-01 3 150874117 150874117 G A MED12L Silent p.Q242Q 0.33 TCGA-ZJ-AAXA-01 3 182946114 182946114 C A MCF2L2 Nonsense_Mutation p.E696* 0.30 TCGA-ZJ-AAXA-01 3 48675620 48675620 G A CELSR3 3'UTR 0.44 TCGA-ZJ-AAXA-01 3 52406963 52406963 C T DNAH1 Silent p.I2293I 0.50 TCGA-ZJ-AAXA-01 3 93699118 93699118 C T ARL13B 5'UTR 0.23 TCGA-ZJ-AAXA-01 4 139086480 139086480 G C SLC7A11 3'UTR 0.76 TCGA-ZJ-AAXA-01 4 140375356 140375356 G A RAB33B Missense_Mutation p.E3K 0.65 tolerated_low_confidence(0.82) unknown(0) TCGA-ZJ-AAXA-01 4 176555580 176555580 G C GPM6A 3'UTR 0.85 TCGA-ZJ-AAXA-01 4 2749650 2749650 C T TNIP2 Missense_Mutation p.R100Q 1.00 tolerated(1) benign(0.002) TCGA-ZJ-AAXA-01 4 41496615 41496615 C T LIMCH1 Silent p.L53L 0.74 TCGA-ZJ-AAXA-01 6 1313521 1313521 G C FOXQ1 Missense_Mutation p.W194C 0.40 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXA-01 7 149171004 149171004 C G ZNF746 3'UTR 0.56 TCGA-ZJ-AAXA-01 7 150884073 150884073 G A ASB10 Missense_Mutation p.R49C 0.45 tolerated(0.07) benign(0.014) TCGA-ZJ-AAXA-01 7 151791433 151791433 C T GALNT11 Missense_Mutation p.P41S 0.08 tolerated(0.15) probably_damaging(1) TCGA-ZJ-AAXA-01 7 20431097 20431097 A G ITGB8 Silent p.Q344Q 0.21 TCGA-ZJ-AAXA-01 7 5331331 5331331 C G SLC29A4 Silent p.L141L 0.54 TCGA-ZJ-AAXA-01 7 63538715 63538715 G A ZNF727 Missense_Mutation p.G430S 0.24 deleterious(0.01) probably_damaging(0.957) TCGA-ZJ-AAXA-01 7 72476278 72476278 C A STAG3L3 RNA 0.47 TCGA-ZJ-AAXA-01 8 108911564 108911564 C G RSPO2 3'UTR 0.17 TCGA-ZJ-AAXA-01 8 110393719 110393719 C G PKHD1L1 Nonsense_Mutation p.S95* 0.20 TCGA-ZJ-AAXA-01 8 110980280 110980280 A T KCNV1 3'UTR 0.50 TCGA-ZJ-AAXA-01 8 114111016 114111016 C T CSMD3 Missense_Mutation p.E296K 0.31 deleterious(0.03) possibly_damaging(0.734) TCGA-ZJ-AAXA-01 8 93004061 93004061 C T RUNX1T1 Missense_Mutation p.R277Q 0.28 deleterious(0) possibly_damaging(0.557) TCGA-ZJ-AAXA-01 9 36390556 36390556 C G RNF38 Missense_Mutation p.E24Q 0.50 deleterious_low_confidence(0) benign(0.403) TCGA-ZJ-AAXA-01 9 88952250 88952250 C T ZCCHC6 Intron 0.30 TCGA-ZJ-AAXA-01 X 114141525 114141525 A G HTR2C Silent p.K308K 0.17 TCGA-ZJ-AAXA-01 X 135591331 135591331 C T HTATSF1 Missense_Mutation p.L306F 0.16 deleterious(0.01) possibly_damaging(0.818) TCGA-ZJ-AAXA-01 X 144337383 144337383 T A SPANXN1 3'UTR 0.28 TCGA-ZJ-AAXA-01 X 144909780 144909780 A T TMEM257 3'UTR 0.19 TCGA-ZJ-AAXA-01 X 153694763 153694763 C T PLXNA3 Silent p.S948S 0.25 TCGA-ZJ-AAXA-01 X 16170714 16170714 C T GRPR Silent p.S367S 0.26 TCGA-ZJ-AAXA-01 X 21985322 21985322 G A SMS Missense_Mutation p.E20K 0.30 tolerated(0.14) benign(0.001) TCGA-ZJ-AAXA-01 X 3242229 3242229 C T MXRA5 Silent p.L499L 0.16 TCGA-ZJ-AAXA-01 X 3242414 3242414 C A MXRA5 Missense_Mutation p.D438Y 0.21 deleterious(0.01) possibly_damaging(0.456) TCGA-ZJ-AAXA-01 X 38664370 38664370 C T MID1IP1 Silent p.G57G 0.24 TCGA-ZJ-AAXA-01 X 48760239 48760239 G A PQBP1 Missense_Mutation p.E226K 0.24 deleterious(0.02) possibly_damaging(0.694) TCGA-ZJ-AAXA-01 X 70472631 70472631 C T ZMYM3 Missense_Mutation p.E159K 0.21 tolerated_low_confidence(0.05) benign(0.058) TCGA-ZJ-AAXB-01 10 105948089 105948089 C T WDR96 Silent p.S542S 0.40 TCGA-ZJ-AAXB-01 10 22676907 22676907 T C SPAG6 Silent p.I278I 0.21 TCGA-ZJ-AAXB-01 10 28909171 28909171 T G WAC 3'UTR 0.30 TCGA-ZJ-AAXB-01 10 38407801 38407801 G A ZNF37A 3'UTR 0.21 TCGA-ZJ-AAXB-01 10 46342576 46342576 C T AGAP4 Missense_Mutation p.E74K 0.13 deleterious_low_confidence(0.01) benign(0.069) TCGA-ZJ-AAXB-01 10 70863993 70863993 G C SRGN 3'UTR 0.32 TCGA-ZJ-AAXB-01 10 74658457 74658457 G A OIT3 Missense_Mutation p.E33K 0.47 deleterious(0) probably_damaging(0.982) TCGA-ZJ-AAXB-01 11 121060540 121060540 C T TECTA Silent p.L2106L 0.20 TCGA-ZJ-AAXB-01 11 124543836 124543836 G C SPA17 5'UTR 0.41 TCGA-ZJ-AAXB-01 11 134257523 134257523 C T B3GAT1 Missense_Mutation p.V11I 0.26 tolerated_low_confidence(0.21) benign(0.007) TCGA-ZJ-AAXB-01 11 19209764 19209764 C A CSRP3 Missense_Mutation p.G67V 0.36 deleterious(0) probably_damaging(0.97) TCGA-ZJ-AAXB-01 11 28352121 28352121 C T METTL15 Silent p.L319L 0.51 TCGA-ZJ-AAXB-01 11 292889 292889 C A ATHL1 Missense_Mutation p.L388M 0.67 deleterious(0.02) probably_damaging(0.93) TCGA-ZJ-AAXB-01 11 4045156 4045156 C T STIM1 Silent p.F108F 0.30 TCGA-ZJ-AAXB-01 11 45954683 45954683 C A PHF21A 3'Flank 0.19 TCGA-ZJ-AAXB-01 11 73711382 73711382 C T UCP3 3'UTR 0.26 TCGA-ZJ-AAXB-01 11 73806440 73806440 C G C2CD3 Missense_Mutation p.G998A 0.35 tolerated(0.12) possibly_damaging(0.782) TCGA-ZJ-AAXB-01 11 83170457 83170457 G A DLG2 3'UTR 0.23 TCGA-ZJ-AAXB-01 11 93517587 93517587 C T MED17 5'UTR 0.50 TCGA-ZJ-AAXB-01 12 103352713 103352713 G A ASCL1 Missense_Mutation p.D231N 0.40 deleterious(0.02) benign(0.325) TCGA-ZJ-AAXB-01 12 109671799 109671799 C T ACACB Silent p.H1432H 0.22 TCGA-ZJ-AAXB-01 12 109948218 109948219 GG - UBE3B Frame_Shift_Del p.D605Lfs*19 0.25 TCGA-ZJ-AAXB-01 12 112638445 112638445 T A HECTD4 Missense_Mutation p.H2709L 0.37 probably_damaging(0.991) TCGA-ZJ-AAXB-01 12 120313907 120313907 G A CIT Silent p.S22S 0.06 TCGA-ZJ-AAXB-01 12 121622408 121622408 G A P2RX7 Missense_Mutation p.E531K 0.16 deleterious(0.01) possibly_damaging(0.51) TCGA-ZJ-AAXB-01 12 12303916 12303916 C T LRP6 Missense_Mutation p.D950N 0.22 tolerated(0.26) benign(0.022) TCGA-ZJ-AAXB-01 12 124821655 124821655 C T NCOR2 Missense_Mutation p.G1920D 0.08 possibly_damaging(0.738) TCGA-ZJ-AAXB-01 12 14940392 14940392 C T WBP11 Silent p.L511L 0.17 TCGA-ZJ-AAXB-01 12 19512386 19512386 G C PLEKHA5 Missense_Mutation p.R1130T 0.23 deleterious(0.01) benign(0.009) TCGA-ZJ-AAXB-01 12 49426774 49426774 T A KMT2D Missense_Mutation p.Q3905L 0.08 unknown(0) TCGA-ZJ-AAXB-01 12 5027188 5027188 G C KCNA1 3'UTR 0.35 TCGA-ZJ-AAXB-01 12 50869874 50869874 T C LARP4 3'UTR 0.19 TCGA-ZJ-AAXB-01 12 53822735 53822735 G A AMHR2 Missense_Mutation p.R303Q 0.33 deleterious(0.04) possibly_damaging(0.553) TCGA-ZJ-AAXB-01 12 58145100 58145100 G C CDK4 Missense_Mutation p.R82G 0.43 deleterious(0.02) benign(0.047) TCGA-ZJ-AAXB-01 12 58177044 58177044 C G TSFM Missense_Mutation p.T70S 0.48 tolerated(0.61) benign(0.02) TCGA-ZJ-AAXB-01 12 60173417 60173417 C G SLC16A7 Nonsense_Mutation p.S465* 0.28 TCGA-ZJ-AAXB-01 12 77243238 77243238 A G ZDHHC17 Missense_Mutation p.E583G 0.27 tolerated(0.08) benign(0) TCGA-ZJ-AAXB-01 12 82783629 82783629 G A METTL25 Missense_Mutation p.M153I 0.20 tolerated(0.48) benign(0.001) TCGA-ZJ-AAXB-01 12 9751194 9751194 G A KLRB1 Silent p.C105C 0.26 TCGA-ZJ-AAXB-01 13 103387054 103387054 T A CCDC168 Missense_Mutation p.R702S 0.52 tolerated(0.38) benign(0.004) TCGA-ZJ-AAXB-01 13 108882899 108882899 A G ABHD13 3'UTR 0.47 TCGA-ZJ-AAXB-01 13 113212548 113212548 G T TUBGCP3 Silent p.L170L 0.37 TCGA-ZJ-AAXB-01 13 25744698 25744698 G T AMER2 Missense_Mutation p.P354T 0.35 deleterious(0.05) probably_damaging(0.999) TCGA-ZJ-AAXB-01 13 52809357 52809357 C G TPTE2P2 Intron 0.27 TCGA-ZJ-AAXB-01 13 96642297 96642297 C T UGGT2 Silent p.L287L 0.35 TCGA-ZJ-AAXB-01 14 106237548 106237548 T A IGHG3 Missense_Mutation p.S66C 0.31 deleterious(0) probably_damaging(0.988) TCGA-ZJ-AAXB-01 14 20444373 20444373 G C OR4K15 Silent p.L232L 0.38 TCGA-ZJ-AAXB-01 14 38016235 38016235 C G MIPOL1 3'UTR 0.39 TCGA-ZJ-AAXB-01 14 69350983 69350983 C G ACTN1 Missense_Mutation p.E513Q 0.36 deleterious(0.03) possibly_damaging(0.545) TCGA-ZJ-AAXB-01 15 102514275 102514275 C T WASH3P 3'Flank 0.26 TCGA-ZJ-AAXB-01 15 102516402 102516402 C G WASH3P 3'Flank 0.06 TCGA-ZJ-AAXB-01 15 20657690 20657690 C T HERC2P3 RNA 0.13 TCGA-ZJ-AAXB-01 15 41271147 41271147 C T INO80 3'UTR 0.22 TCGA-ZJ-AAXB-01 15 44789249 44789249 G A CTDSPL2 Silent p.P265P 0.26 TCGA-ZJ-AAXB-01 15 48718048 48718048 G A FBN1 Silent p.C2406C 0.21 TCGA-ZJ-AAXB-01 15 52708352 52708352 G C MYO5A Missense_Mutation p.P201R 0.22 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXB-01 15 69717636 69717636 C T KIF23 Intron 0.23 TCGA-ZJ-AAXB-01 15 75116725 75116725 C T LMAN1L Nonsense_Mutation p.Q453* 0.20 TCGA-ZJ-AAXB-01 15 75819587 75819587 G C PTPN9 Missense_Mutation p.L27V 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-ZJ-AAXB-01 15 83357943 83357943 C T AP3B2 Silent p.A77A 0.30 TCGA-ZJ-AAXB-01 15 89416148 89416148 T - ACAN Frame_Shift_Del p.F2410Lfs*9 0.20 TCGA-ZJ-AAXB-01 16 12662360 12662360 C G SNX29 Intron 0.64 TCGA-ZJ-AAXB-01 16 14761903 14761903 G T BFAR 3'UTR 0.42 TCGA-ZJ-AAXB-01 16 20352497 20352497 C T UMOD Missense_Mutation p.R498Q 0.27 tolerated(0.34) benign(0.082) TCGA-ZJ-AAXB-01 16 28333843 28333843 C A SBK1 3'UTR 0.48 TCGA-ZJ-AAXB-01 16 30106149 30106149 G C YPEL3 Missense_Mutation p.I115M 0.44 deleterious(0) probably_damaging(0.967) TCGA-ZJ-AAXB-01 16 49671243 49671243 G A ZNF423 Missense_Mutation p.S607L 0.43 tolerated(0.23) probably_damaging(0.956) TCGA-ZJ-AAXB-01 16 71976778 71976778 G A PKD1L3 RNA 0.34 TCGA-ZJ-AAXB-01 16 72827581 72827581 T - ZFHX3 Frame_Shift_Del p.E3001Kfs*6 0.33 TCGA-ZJ-AAXB-01 16 87636713 87636713 C A JPH3 5'UTR 0.41 TCGA-ZJ-AAXB-01 17 1577807 1577807 G A PRPF8 Silent p.D1076D 0.26 TCGA-ZJ-AAXB-01 17 18159847 18159847 G A FLII Missense_Mutation p.S80L 0.50 tolerated(0.41) benign(0.002) TCGA-ZJ-AAXB-01 17 26727517 26727517 G A SARM1 3'UTR 0.26 TCGA-ZJ-AAXB-01 17 27296965 27296965 C G SEZ6 Missense_Mutation p.Q288H 0.33 tolerated(0.1) benign(0.006) TCGA-ZJ-AAXB-01 17 44626253 44626255 CCC - LRRC37A2 In_Frame_Del p.P1250del 0.12 TCGA-ZJ-AAXB-01 17 59482936 59482936 C T TBX2 Silent p.H475H 0.25 TCGA-ZJ-AAXB-01 17 65979667 65979667 G A BPTF 3'Flank 0.17 TCGA-ZJ-AAXB-01 17 76556861 76556861 G A DNAH17 Silent p.D664D 0.16 TCGA-ZJ-AAXB-01 17 7663246 7663246 A T DNAH2 Missense_Mutation p.Q925H 0.35 benign(0) TCGA-ZJ-AAXB-01 17 79202798 79202798 G A ENTHD2 Missense_Mutation p.S503L 0.24 tolerated(0.51) benign(0.003) TCGA-ZJ-AAXB-01 17 79994739 79994739 C T DCXR Missense_Mutation p.D101N 0.31 tolerated(0.06) benign(0.416) TCGA-ZJ-AAXB-01 18 10671614 10671614 C A PIEZO2 Silent p.L2723L 0.23 TCGA-ZJ-AAXB-01 18 28737436 28737436 G A DSC1 Silent p.L83L 0.20 TCGA-ZJ-AAXB-01 18 45566314 45566314 C T ZBTB7C Missense_Mutation p.E389K 0.44 deleterious(0) possibly_damaging(0.601) TCGA-ZJ-AAXB-01 18 59221904 59221904 G A CDH20 Silent p.S794S 0.31 TCGA-ZJ-AAXB-01 18 74402152 74402152 G C AC034110.1 RNA 0.27 TCGA-ZJ-AAXB-01 19 23938244 23938244 C T ZNF681 Missense_Mutation p.R38K 0.24 deleterious(0.03) possibly_damaging(0.694) TCGA-ZJ-AAXB-01 19 3434290 3434290 G A NFIC Missense_Mutation p.G242E 0.12 deleterious(0.01) possibly_damaging(0.902) TCGA-ZJ-AAXB-01 19 34900195 34900195 G A RP11-618P17.4 Missense_Mutation p.V185I 0.16 tolerated_low_confidence(0.56) benign(0.009) TCGA-ZJ-AAXB-01 19 39936389 39936389 C T SUPT5H Intron 0.14 TCGA-ZJ-AAXB-01 19 41083338 41083338 G C SHKBP1 Missense_Mutation p.E59D 0.21 tolerated(0.06) benign(0.159) TCGA-ZJ-AAXB-01 19 41246666 41246666 A G ITPKC 3'UTR 0.29 TCGA-ZJ-AAXB-01 19 44223913 44223913 C G IRGC Missense_Mutation p.I401M 0.12 tolerated(0.18) probably_damaging(0.91) TCGA-ZJ-AAXB-01 19 4488735 4488735 C T HDGFRP2 Silent p.D117D 0.56 TCGA-ZJ-AAXB-01 19 48877004 48877004 C T SYNGR4 Silent p.I108I 0.12 TCGA-ZJ-AAXB-01 19 49001687 49001687 G T LMTK3 Missense_Mutation p.A909E 0.16 unknown(0) TCGA-ZJ-AAXB-01 19 51639498 51639498 C G SIGLEC9 3'UTR 0.56 TCGA-ZJ-AAXB-01 19 54659157 54659157 C T LENG1 3'UTR 0.29 TCGA-ZJ-AAXB-01 19 58232269 58232269 C G ZNF671 Missense_Mutation p.R395S 0.21 deleterious(0.02) probably_damaging(0.955) TCGA-ZJ-AAXB-01 19 58427853 58427853 G A ZNF417 5'UTR 0.17 TCGA-ZJ-AAXB-01 19 7142852 7142852 G A INSR Silent p.Y839Y 0.25 TCGA-ZJ-AAXB-01 19 9677138 9677138 T A ZNF121 Missense_Mutation p.K217N 0.26 tolerated(0.21) possibly_damaging(0.709) TCGA-ZJ-AAXB-01 1 109338902 109338902 C A STXBP3 Missense_Mutation p.S386Y 0.24 deleterious(0.03) benign(0.017) TCGA-ZJ-AAXB-01 1 113162402 113162402 C T CAPZA1 5'UTR 0.31 TCGA-ZJ-AAXB-01 1 150705467 150705476 AAGTTAAGAG - CTSS 3'UTR 0.19 TCGA-ZJ-AAXB-01 1 155291615 155291615 C T RUSC1 Silent p.L17L 0.21 TCGA-ZJ-AAXB-01 1 155931999 155931999 G A ARHGEF2 Silent p.P372P 0.54 TCGA-ZJ-AAXB-01 1 157803097 157803097 G C CD5L Missense_Mutation p.I308M 0.32 deleterious(0.03) possibly_damaging(0.876) TCGA-ZJ-AAXB-01 1 158436076 158436076 C T OR10K1 Missense_Mutation p.A242V 0.44 deleterious(0.03) benign(0.17) TCGA-ZJ-AAXB-01 1 161682978 161682978 G A FCRLA Silent p.P319P 0.61 TCGA-ZJ-AAXB-01 1 178412342 178412342 T C RASAL2 Missense_Mutation p.L487P 0.16 deleterious(0.01) benign(0.179) TCGA-ZJ-AAXB-01 1 205197555 205197555 C G TMCC2 5'UTR 0.50 TCGA-ZJ-AAXB-01 1 21377361 21377361 G A EIF4G3 Intron 0.31 TCGA-ZJ-AAXB-01 1 23687848 23687848 G C ZNF436 3'UTR 0.53 TCGA-ZJ-AAXB-01 1 23688573 23688573 G T ZNF436 Silent p.I434I 0.70 TCGA-ZJ-AAXB-01 1 246952959 246952959 C T RP11-439E19.3 RNA 0.26 TCGA-ZJ-AAXB-01 1 247004096 247004096 C A AHCTF1 3'UTR 0.20 TCGA-ZJ-AAXB-01 1 26288321 26288321 G C PAFAH2 3'UTR 0.28 TCGA-ZJ-AAXB-01 1 38331538 38331538 G C INPP5B Silent p.A803A 0.06 TCGA-ZJ-AAXB-01 1 39823219 39823219 A T MACF1 Missense_Mutation p.E1804V 0.33 probably_damaging(0.974) TCGA-ZJ-AAXB-01 1 46501192 46501192 G A MAST2 Nonsense_Mutation p.W1617* 0.50 TCGA-ZJ-AAXB-01 1 67390637 67390637 G T MIER1 5'Flank 0.35 TCGA-ZJ-AAXB-01 1 85510871 85510871 C T MCOLN3 Missense_Mutation p.R58K 0.49 deleterious(0.03) probably_damaging(0.942) TCGA-ZJ-AAXB-01 20 1223404 1223404 G A RAD21L1 Missense_Mutation p.R333K 0.09 tolerated(1) benign(0.145) TCGA-ZJ-AAXB-01 20 20340890 20340890 C G C20orf26 Missense_Mutation p.Q1184E 0.22 tolerated(0.17) benign(0.009) TCGA-ZJ-AAXB-01 20 23669486 23669486 C G CST4 Missense_Mutation p.D41H 0.20 deleterious(0) probably_damaging(0.99) TCGA-ZJ-AAXB-01 20 30370105 30370105 C G TPX2 Missense_Mutation p.P370A 0.13 deleterious(0.01) probably_damaging(0.959) TCGA-ZJ-AAXB-01 20 30421663 30421663 C T MYLK2 3'UTR 0.35 TCGA-ZJ-AAXB-01 20 30585408 30585408 G T XKR7 3'UTR 0.29 TCGA-ZJ-AAXB-01 20 31035472 31035472 C T C20orf112 Missense_Mutation p.G413D 0.23 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXB-01 20 3147451 3147463 CCGCTGCTGCCAA - LZTS3 Frame_Shift_Del p.V116Efs*32 0.12 TCGA-ZJ-AAXB-01 20 32436373 32436373 G A CHMP4B Silent p.E97E 0.20 TCGA-ZJ-AAXB-01 20 3529829 3529829 C T ATRN Missense_Mutation p.S319L 0.18 deleterious(0) benign(0.097) TCGA-ZJ-AAXB-01 20 3765762 3765762 C A CENPB Missense_Mutation p.D457Y 0.16 tolerated_low_confidence(0.05) unknown(0) TCGA-ZJ-AAXB-01 20 3765925 3765925 C T CENPB Silent p.K402K 0.23 TCGA-ZJ-AAXB-01 20 44680355 44680355 C T SLC12A5 Silent p.F764F 0.26 TCGA-ZJ-AAXB-01 20 49575519 49575519 C T MOCS3 Missense_Mutation p.S47L 0.31 tolerated(0.13) benign(0.004) TCGA-ZJ-AAXB-01 20 5560664 5560665 - T GPCPD1 Frame_Shift_Ins p.S155Ifs*2 0.10 TCGA-ZJ-AAXB-01 20 58442897 58442897 C T SYCP2 Missense_Mutation p.E1332K 0.29 deleterious(0.04) benign(0.037) TCGA-ZJ-AAXB-01 20 60754514 60754515 - T SS18L1 3'UTR 0.17 TCGA-ZJ-AAXB-01 20 60884794 60884795 - G LAMA5 Frame_Shift_Ins p.L3643Sfs*8 0.29 TCGA-ZJ-AAXB-01 20 61826926 61826926 C T YTHDF1 3'UTR 0.37 TCGA-ZJ-AAXB-01 20 62572892 62572892 C T UCKL1 Intron 0.36 TCGA-ZJ-AAXB-01 20 8707988 8707988 G C PLCB1 Missense_Mutation p.V571L 0.08 deleterious(0) possibly_damaging(0.851) TCGA-ZJ-AAXB-01 21 30319790 30319798 AGTGCTGCA - LTN1 In_Frame_Del p.C1205_T1207del 0.32 TCGA-ZJ-AAXB-01 21 34911490 34911490 C T GART Silent p.K44K 0.39 TCGA-ZJ-AAXB-01 21 41711117 41711120 CCGT - DSCAM Frame_Shift_Del p.D478Gfs*21 0.39 TCGA-ZJ-AAXB-01 22 32111503 32111503 G A PRR14L Silent p.V774V 0.27 TCGA-ZJ-AAXB-01 22 37329971 37329971 C T CSF2RB Missense_Mutation p.S417F 0.25 tolerated(0.07) benign(0.039) TCGA-ZJ-AAXB-01 22 39148583 39148583 G T SUN2 Missense_Mutation p.D17E 0.30 tolerated(0.1) probably_damaging(0.998) TCGA-ZJ-AAXB-01 22 40708574 40708574 A T TNRC6B Missense_Mutation p.T1501S 0.23 deleterious(0) benign(0.133) TCGA-ZJ-AAXB-01 22 41723332 41723332 C G ZC3H7B Nonsense_Mutation p.Y136* 0.33 TCGA-ZJ-AAXB-01 2 113315592 113315592 A G POLR1B Missense_Mutation p.M422V 0.27 tolerated(1) benign(0.021) TCGA-ZJ-AAXB-01 2 145146494 145146494 A G ZEB2 3'UTR 0.30 TCGA-ZJ-AAXB-01 2 152293792 152293792 T G RIF1 Missense_Mutation p.F470L 0.23 deleterious(0.02) probably_damaging(0.977) TCGA-ZJ-AAXB-01 2 186672128 186672128 A G FSIP2 Missense_Mutation p.K6121R 0.18 benign(0.324) TCGA-ZJ-AAXB-01 2 20402908 20402908 C G SDC1 Missense_Mutation p.V235L 0.27 tolerated(0.15) benign(0.057) TCGA-ZJ-AAXB-01 2 232327964 232327965 TA - NCL Frame_Shift_Del p.D27Efs*2 0.26 TCGA-ZJ-AAXB-01 2 24522785 24522785 C T ITSN2 Missense_Mutation p.R446K 0.22 deleterious(0.04) unknown(0) TCGA-ZJ-AAXB-01 2 26616148 26616148 C A EPT1 3'UTR 0.24 TCGA-ZJ-AAXB-01 2 43783532 43783532 C G THADA Missense_Mutation p.D876H 0.22 tolerated(0.13) benign(0.007) TCGA-ZJ-AAXB-01 2 73678459 73678459 G A ALMS1 Missense_Mutation p.G1601E 0.16 benign(0.024) TCGA-ZJ-AAXB-01 2 96971233 96971233 G A SNRNP200 5'UTR 0.23 TCGA-ZJ-AAXB-01 3 110853032 110853032 C A PVRL3 Silent p.S540S 0.20 TCGA-ZJ-AAXB-01 3 12200210 12200210 G A TIMP4 Missense_Mutation p.S44L 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-ZJ-AAXB-01 3 150645974 150645974 G A CLRN1 Missense_Mutation p.L163F 0.23 tolerated(0.1) probably_damaging(1) TCGA-ZJ-AAXB-01 3 154862151 154862151 G A MME Missense_Mutation p.E441K 0.07 tolerated(0.81) benign(0.069) TCGA-ZJ-AAXB-01 3 164908294 164908294 C T SLITRK3 Missense_Mutation p.G109R 0.18 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXB-01 3 190028044 190028044 T A CLDN1 Splice_Site p.X130_splice 0.15 TCGA-ZJ-AAXB-01 3 195780403 195780403 C T TFRC Silent p.L642L 0.25 TCGA-ZJ-AAXB-01 3 46621544 46621544 G C TDGF1 Missense_Mutation p.G148R 0.29 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXB-01 3 65464416 65464416 G C MAGI1 Missense_Mutation p.T203R 0.33 tolerated(0.05) possibly_damaging(0.597) TCGA-ZJ-AAXB-01 4 109862539 109862539 T C COL25A1 Missense_Mutation p.K183E 0.28 tolerated(0.18) unknown(0) TCGA-ZJ-AAXB-01 4 147830365 147830365 G T TTC29 Missense_Mutation p.D71E 0.22 tolerated(0.24) benign(0.005) TCGA-ZJ-AAXB-01 4 17706652 17706652 C A FAM184B Missense_Mutation p.V450L 0.29 tolerated(0.08) benign(0.225) TCGA-ZJ-AAXB-01 4 22414840 22414840 G A GPR125 Nonsense_Mutation p.Q733* 0.24 TCGA-ZJ-AAXB-01 4 48165756 48165756 C T TEC Missense_Mutation p.V234I 0.43 tolerated(0.08) probably_damaging(0.994) TCGA-ZJ-AAXB-01 4 55599321 55599321 A T KIT Missense_Mutation p.D816V 0.42 deleterious(0) probably_damaging(0.977) TCGA-ZJ-AAXB-01 4 71201509 71201509 C A CABS1 Silent p.T251T 0.46 TCGA-ZJ-AAXB-01 4 9784208 9784208 G C DRD5 Silent p.A185A 0.50 TCGA-ZJ-AAXB-01 5 1253840 1253840 C A TERT 3'UTR 0.13 TCGA-ZJ-AAXB-01 5 132270583 132270583 G T AFF4 Missense_Mutation p.N58K 0.28 deleterious(0) possibly_damaging(0.735) TCGA-ZJ-AAXB-01 5 140562507 140562507 G T PCDHB16 Missense_Mutation p.D125Y 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZJ-AAXB-01 5 140720514 140720514 C T PCDHGA2 Missense_Mutation p.T659M 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-ZJ-AAXB-01 5 171289121 171289121 C T FBXW11 3'UTR 0.34 TCGA-ZJ-AAXB-01 5 171289411 171289411 C G FBXW11 3'UTR 0.27 TCGA-ZJ-AAXB-01 5 171290287 171290287 C T FBXW11 3'UTR 0.33 TCGA-ZJ-AAXB-01 5 171290839 171290839 C G FBXW11 3'UTR 0.35 TCGA-ZJ-AAXB-01 5 179405287 179405287 T G RNF130 Splice_Site p.X256_splice 0.30 TCGA-ZJ-AAXB-01 5 22142518 22142518 T - CDH12 Intron 0.14 TCGA-ZJ-AAXB-01 5 32052772 32052772 C T PDZD2 Missense_Mutation p.S574F 0.16 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXB-01 5 32789716 32789716 C T AC026703.1 Missense_Mutation p.S70L 0.14 possibly_damaging(0.504) TCGA-ZJ-AAXB-01 5 55204512 55204512 G C IL31RA Intron 0.12 TCGA-ZJ-AAXB-01 5 82815188 82815188 G C VCAN Missense_Mutation p.D355H 0.41 deleterious(0) possibly_damaging(0.748) TCGA-ZJ-AAXB-01 5 85586728 85586728 C A NBPF22P RNA 0.39 TCGA-ZJ-AAXB-01 6 107096899 107096899 G C QRSL1 Splice_Site p.X127_splice 0.44 TCGA-ZJ-AAXB-01 6 116560195 116560195 A T NT5DC1 Missense_Mutation p.E387D 0.05 tolerated(0.26) benign(0.007) TCGA-ZJ-AAXB-01 6 28543524 28543524 G T SCAND3 Missense_Mutation p.H320N 0.18 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-ZJ-AAXB-01 6 30153501 30153501 G T TRIM26 3'UTR 0.23 TCGA-ZJ-AAXB-01 6 31082638 31082638 C T PSORS1C1 5'UTR 0.30 TCGA-ZJ-AAXB-01 6 31851657 31851657 C G EHMT2 Missense_Mutation p.E948Q 0.33 tolerated(0.13) possibly_damaging(0.483) TCGA-ZJ-AAXB-01 6 32012901 32012901 G A TNXB Silent p.D32D 0.14 TCGA-ZJ-AAXB-01 6 41889325 41889325 G T BYSL Missense_Mutation p.G9W 0.31 deleterious(0.01) possibly_damaging(0.522) TCGA-ZJ-AAXB-01 6 42195938 42195939 - T TRERF1 3'UTR 0.13 TCGA-ZJ-AAXB-01 6 46658516 46658516 T C TDRD6 Missense_Mutation p.L884P 0.22 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXB-01 6 51611669 51611669 A G PKHD1 Missense_Mutation p.F3283S 0.22 deleterious(0) probably_damaging(0.994) TCGA-ZJ-AAXB-01 6 53762140 53762141 - T LRRC1 Frame_Shift_Ins p.S210Vfs*20 0.20 TCGA-ZJ-AAXB-01 7 111541792 111541792 C T DOCK4 Missense_Mutation p.V420M 0.17 deleterious(0) probably_damaging(0.996) TCGA-ZJ-AAXB-01 7 123267272 123267272 G C ASB15 Missense_Mutation p.G269A 0.38 tolerated(1) benign(0.002) TCGA-ZJ-AAXB-01 7 150714152 150714152 C G ATG9B Missense_Mutation p.G754R 0.76 tolerated(0.25) benign(0.184) TCGA-ZJ-AAXB-01 7 16685776 16685776 C G BZW2 5'UTR 0.41 TCGA-ZJ-AAXB-01 7 5568179 5568179 C T ACTB Missense_Mutation p.D179N 0.44 tolerated_low_confidence(0.11) probably_damaging(0.99) TCGA-ZJ-AAXB-01 7 65220607 65220610 TATT - SNORA22 RNA 0.37 TCGA-ZJ-AAXB-01 7 75615047 75615047 C A POR Missense_Mutation p.R517S 0.21 deleterious(0) probably_damaging(0.978) TCGA-ZJ-AAXB-01 7 86824830 86824830 G C DMTF1 3'UTR 0.40 TCGA-ZJ-AAXB-01 7 87537242 87537242 G A DBF4 Missense_Mutation p.D597N 0.45 tolerated(0.53) benign(0.093) TCGA-ZJ-AAXB-01 7 90896648 90896648 G A FZD1 3'UTR 0.34 TCGA-ZJ-AAXB-01 8 101270953 101270953 G T RNF19A Missense_Mutation p.T783N 0.26 tolerated_low_confidence(0.15) benign(0.009) TCGA-ZJ-AAXB-01 8 119945314 119945314 C T TNFRSF11B Missense_Mutation p.V86M 0.26 deleterious(0.02) benign(0.316) TCGA-ZJ-AAXB-01 8 144332331 144332331 G C ZFP41 Missense_Mutation p.Q106H 0.14 tolerated(0.36) possibly_damaging(0.871) TCGA-ZJ-AAXB-01 8 69058588 69058588 G A PREX2 Splice_Site p.X1411_splice 0.24 TCGA-ZJ-AAXB-01 8 85096060 85096060 T A RALYL 5'Flank 0.24 TCGA-ZJ-AAXB-01 9 124241510 124241510 C T GGTA1P RNA 0.22 TCGA-ZJ-AAXB-01 9 130255166 130255166 G A LRSAM1 Missense_Mutation p.R530Q 0.33 tolerated(0.52) benign(0.002) TCGA-ZJ-AAXB-01 9 133914434 133914434 C T LAMC3 Missense_Mutation p.S387L 0.50 tolerated(0.14) benign(0.004) TCGA-ZJ-AAXB-01 9 140245927 140245927 C T EXD3 Silent p.G409G 0.29 TCGA-ZJ-AAXB-01 9 15307115 15307115 G A TTC39B Silent p.L69L 0.26 TCGA-ZJ-AAXB-01 9 21077253 21077253 G T IFNB1 3'UTR 0.34 TCGA-ZJ-AAXB-01 9 21077806 21077806 G A IFNB1 Silent p.S21S 0.25 TCGA-ZJ-AAXB-01 9 21077811 21077811 G T IFNB1 Missense_Mutation p.L20I 0.25 tolerated(0.05) benign(0.12) TCGA-ZJ-AAXB-01 X 114468599 114468599 C T LRCH2 Silent p.A2A 0.17 TCGA-ZJ-AAXB-01 X 139099588 139099588 C T RP11-364B14.1 RNA 0.88 TCGA-ZJ-AAXB-01 X 153996932 153996932 A C DKC1 Intron 0.34 TCGA-ZJ-AAXB-01 X 22003311 22003311 G T SMS Silent p.V305V 0.30 TCGA-ZJ-AAXB-01 X 22003312 22003312 T C SMS Silent p.L306L 0.30 TCGA-ZJ-AAXB-01 X 27839924 27839924 C A MAGEB10 Missense_Mutation p.D167E 0.38 tolerated(0.19) probably_damaging(0.998) TCGA-ZJ-AAXB-01 X 38145129 38145129 C G RPGR Missense_Mutation p.E1041D 0.15 unknown(0) TCGA-ZJ-AAXB-01 X 46521555 46521555 G A SLC9A7 Missense_Mutation p.H313Y 0.45 tolerated(0.19) benign(0.229) TCGA-ZJ-AAXB-01 X 48927360 48927360 C T CCDC120 3'UTR 0.20 TCGA-ZJ-AAXB-01 X 49023835 49023835 C T MAGIX 3'Flank 0.49 TCGA-ZJ-AAXB-01 X 50113538 50113538 G A DGKK RNA 0.41 TCGA-ZJ-AAXB-01 X 52891561 52891561 G C XAGE3 3'UTR 0.17 TCGA-ZJ-AAXB-01 X 53439137 53439137 G C SMC1A Missense_Mutation p.H307Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXB-01 X 54282214 54282214 G C WNK3 Missense_Mutation p.R737G 0.32 deleterious(0) possibly_damaging(0.691) TCGA-ZJ-AAXB-01 X 57146295 57146295 T A SPIN2B Missense_Mutation p.K256N 0.36 deleterious(0) possibly_damaging(0.849) TCGA-ZJ-AAXB-01 X 65253316 65253316 G A VSIG4 Missense_Mutation p.L138F 0.28 tolerated(0.43) benign(0.016) TCGA-ZJ-AAXB-01 X 75397514 75397514 T C PBDC1 Missense_Mutation p.V158A 0.22 deleterious(0.05) possibly_damaging(0.829) TCGA-ZJ-AAXD-01 10 105143107 105143107 C T TAF5 Silent p.A549A 0.18 TCGA-ZJ-AAXD-01 10 116606351 116606351 C G FAM160B1 Missense_Mutation p.L478V 0.29 deleterious(0) probably_damaging(0.986) TCGA-ZJ-AAXD-01 10 119765535 119765535 C T RAB11FIP2 3'UTR 0.38 TCGA-ZJ-AAXD-01 10 124378851 124378851 C T DMBT1 Missense_Mutation p.P1619L 0.15 tolerated(0.05) possibly_damaging(0.692) TCGA-ZJ-AAXD-01 10 52005020 52005020 G A ASAH2 Nonsense_Mutation p.R108* 0.48 TCGA-ZJ-AAXD-01 10 76780431 76780431 G A KAT6B Silent p.K907K 0.41 TCGA-ZJ-AAXD-01 10 76780432 76780432 A T KAT6B Missense_Mutation p.S908C 0.41 probably_damaging(0.96) TCGA-ZJ-AAXD-01 11 10533476 10533476 A - RNF141 3'UTR 0.29 TCGA-ZJ-AAXD-01 11 10603521 10603521 A C MRVI1 Missense_Mutation p.N751K 0.38 tolerated(0.06) possibly_damaging(0.686) TCGA-ZJ-AAXD-01 11 118889008 118889008 G A RPS25 5'UTR 0.20 TCGA-ZJ-AAXD-01 11 120355773 120355773 C T ARHGEF12 Intron 0.43 TCGA-ZJ-AAXD-01 11 124056677 124056677 G A OR10D3 Missense_Mutation p.R234H 0.14 deleterious(0) probably_damaging(0.992) TCGA-ZJ-AAXD-01 11 5290796 5290796 A G HBE1 Missense_Mutation p.V68A 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-ZJ-AAXD-01 11 5656072 5656072 C T TRIM34 Missense_Mutation p.S244L 0.32 deleterious(0.01) possibly_damaging(0.844) TCGA-ZJ-AAXD-01 11 63526996 63526996 G A RTN3 3'UTR 0.45 TCGA-ZJ-AAXD-01 11 65480917 65480917 C T KAT5 Silent p.G161G 0.28 TCGA-ZJ-AAXD-01 11 65617686 65617686 G T SNX32 Missense_Mutation p.E106D 0.38 deleterious(0.04) possibly_damaging(0.803) TCGA-ZJ-AAXD-01 11 9834134 9834134 G A SBF2 Missense_Mutation p.T1367I 0.08 deleterious(0.01) benign(0.088) TCGA-ZJ-AAXD-01 12 48131380 48131380 G A RAPGEF3 Silent p.L914L 0.31 TCGA-ZJ-AAXD-01 12 52886908 52886908 G T KRT6A Nonsense_Mutation p.S22* 0.37 TCGA-ZJ-AAXD-01 12 58131242 58131242 C T AGAP2 Missense_Mutation p.R263Q 0.28 deleterious_low_confidence(0) benign(0.069) TCGA-ZJ-AAXD-01 12 7083554 7083554 G T EMG1 Missense_Mutation p.L73F 0.27 deleterious(0.01) TCGA-ZJ-AAXD-01 12 88553986 88553986 G A TMTC3 Missense_Mutation p.E202K 0.32 deleterious(0) possibly_damaging(0.897) TCGA-ZJ-AAXD-01 12 93803363 93803363 C A UBE2N 3'UTR 0.07 TCGA-ZJ-AAXD-01 13 36348211 36348211 G T DCLK1 3'UTR 0.53 TCGA-ZJ-AAXD-01 13 50591742 50591742 G C TRIM13 3'Flank 0.20 TCGA-ZJ-AAXD-01 14 31139512 31139513 CT - SCFD1 Frame_Shift_Del p.P304Sfs*4 0.29 TCGA-ZJ-AAXD-01 14 55512106 55512106 G A SOCS4 3'UTR 0.42 TCGA-ZJ-AAXD-01 14 81737171 81737171 G A STON2 Missense_Mutation p.S819F 0.17 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXD-01 15 34064243 34064243 G A RYR3 Missense_Mutation p.R2980Q 0.28 benign(0.275) TCGA-ZJ-AAXD-01 15 44782994 44782994 C T CTDSPL2 Missense_Mutation p.S163L 0.16 deleterious(0.02) benign(0.18) TCGA-ZJ-AAXD-01 15 53994384 53994384 A G WDR72 Missense_Mutation p.F506L 0.23 tolerated(0.37) benign(0.002) TCGA-ZJ-AAXD-01 15 53994412 53994412 G C WDR72 Missense_Mutation p.I496M 0.22 tolerated(0.11) possibly_damaging(0.688) TCGA-ZJ-AAXD-01 16 1447262 1447262 C A UNKL Nonsense_Mutation p.E257* 0.31 TCGA-ZJ-AAXD-01 16 1570686 1570686 C G IFT140 Missense_Mutation p.E1193Q 0.17 tolerated(0.13) benign(0.318) TCGA-ZJ-AAXD-01 16 57115087 57115087 G C NLRC5 Missense_Mutation p.R1800T 0.45 tolerated(0.06) benign(0.335) TCGA-ZJ-AAXD-01 16 700569 700569 G A WDR90 Missense_Mutation p.R140H 0.53 deleterious(0.02) probably_damaging(0.938) TCGA-ZJ-AAXD-01 16 74336128 74336128 G A PSMD7 Missense_Mutation p.V126M 0.63 deleterious(0.05) possibly_damaging(0.658) TCGA-ZJ-AAXD-01 16 775566 775566 C G CCDC78 Missense_Mutation p.E94D 0.42 deleterious(0.01) possibly_damaging(0.766) TCGA-ZJ-AAXD-01 16 88694432 88694432 C T ZC3H18 Nonsense_Mutation p.Q792* 0.67 TCGA-ZJ-AAXD-01 16 89776997 89776997 C T VPS9D1 Missense_Mutation p.V419I 0.20 tolerated(1) benign(0.001) TCGA-ZJ-AAXD-01 17 3119639 3119639 C T OR1A1 Missense_Mutation p.S242F 0.59 deleterious(0) benign(0.25) TCGA-ZJ-AAXD-01 17 33328374 33328374 C T LIG3 Silent p.I810I 0.22 TCGA-ZJ-AAXD-01 17 33329037 33329037 C G LIG3 Missense_Mutation p.S863C 0.42 deleterious(0.02) benign(0.345) TCGA-ZJ-AAXD-01 17 34310875 34310875 A G CCL14 Missense_Mutation p.W98R 0.12 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXD-01 17 37008936 37008936 C T RPL23 Silent p.L49L 0.17 TCGA-ZJ-AAXD-01 17 37618716 37618716 A G CDK12 Missense_Mutation p.E131G 0.50 unknown(0) TCGA-ZJ-AAXD-01 17 40997210 40997210 C T AOC2 Silent p.I189I 0.39 TCGA-ZJ-AAXD-01 17 41355748 41355748 C T NBR1 Missense_Mutation p.S891F 0.21 deleterious(0) probably_damaging(0.914) TCGA-ZJ-AAXD-01 17 58512558 58512558 C A C17orf64 3'Flank 0.44 TCGA-ZJ-AAXD-01 17 65978748 65978748 C T BPTF 3'UTR 0.14 TCGA-ZJ-AAXD-01 17 74395816 74395816 C T UBE2O Missense_Mutation p.E448K 0.24 tolerated(0.27) benign(0.085) TCGA-ZJ-AAXD-01 17 78166403 78166403 C T CARD14 Silent p.L447L 0.32 TCGA-ZJ-AAXD-01 17 7826367 7826367 G T KCNAB3 3'UTR 0.24 TCGA-ZJ-AAXD-01 18 3502610 3502610 C A DLGAP1 Missense_Mutation p.D869Y 0.37 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXD-01 19 12429606 12429606 G A ZNF563 Silent p.H411H 0.12 TCGA-ZJ-AAXD-01 19 1877396 1877396 G A ABHD17A Missense_Mutation p.P297S 0.27 deleterious(0) probably_damaging(0.995) TCGA-ZJ-AAXD-01 19 19309476 19309476 C T RFXANK Missense_Mutation p.T192M 0.18 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXD-01 19 33555693 33555693 C T RHPN2 Silent p.R22R 0.57 TCGA-ZJ-AAXD-01 19 36231963 36231963 C T IGFLR1 Missense_Mutation p.S40N 0.13 tolerated(0.14) benign(0.107) TCGA-ZJ-AAXD-01 19 39055628 39055628 C T RYR1 Silent p.F4218F 0.15 TCGA-ZJ-AAXD-01 19 42729656 42729656 C T ZNF526 Silent p.R367R 0.59 TCGA-ZJ-AAXD-01 19 49340754 49340754 G A PLEKHA4 Missense_Mutation p.S711L 0.44 deleterious_low_confidence(0) benign(0.298) TCGA-ZJ-AAXD-01 19 50865242 50865242 G A NAPSA Silent p.F111F 0.43 TCGA-ZJ-AAXD-01 19 52468361 52468361 C T ZNF350 Missense_Mutation p.D449N 0.21 tolerated(0.22) benign(0.057) TCGA-ZJ-AAXD-01 19 56370170 56370170 G T NLRP4 Missense_Mutation p.D471Y 0.19 deleterious(0.01) possibly_damaging(0.567) TCGA-ZJ-AAXD-01 19 5699103 5699103 C G LONP1 Silent p.L540L 0.29 TCGA-ZJ-AAXD-01 1 145542261 145542261 G C ITGA10 Missense_Mutation p.E1163Q 0.15 tolerated(0.13) unknown(0) TCGA-ZJ-AAXD-01 1 152277524 152277524 C T FLG Missense_Mutation p.E3280K 0.18 unknown(0) TCGA-ZJ-AAXD-01 1 153066097 153066097 G A SPRR2E Missense_Mutation p.P44L 0.21 deleterious_low_confidence(0) unknown(0) TCGA-ZJ-AAXD-01 1 17023099 17023099 C T ESPNP RNA 0.12 TCGA-ZJ-AAXD-01 1 171501678 171501678 C T PRRC2C Missense_Mutation p.A482V 0.28 unknown(0) TCGA-ZJ-AAXD-01 1 202097547 202097547 G A GPR37L1 Missense_Mutation p.E437K 0.30 tolerated(0.48) benign(0.046) TCGA-ZJ-AAXD-01 1 2435909 2435909 G A PLCH2 3'UTR 0.31 TCGA-ZJ-AAXD-01 1 27429748 27429748 G A SLC9A1 Missense_Mutation p.T514M 0.31 deleterious(0.02) possibly_damaging(0.836) TCGA-ZJ-AAXD-01 1 45268806 45268806 G A PLK3 Missense_Mutation p.R310H 0.24 tolerated(0.09) benign(0.011) TCGA-ZJ-AAXD-01 1 70697780 70697780 C T SRSF11 Intron 0.21 TCGA-ZJ-AAXD-01 1 76877965 76877965 G T ST6GALNAC3 Missense_Mutation p.R162S 0.50 probably_damaging(0.953) TCGA-ZJ-AAXD-01 20 24523796 24523796 G C SYNDIG1 Missense_Mutation p.K21N 0.31 deleterious(0) benign(0.093) TCGA-ZJ-AAXD-01 20 49575482 49575482 G T MOCS3 Nonsense_Mutation p.E35* 0.20 TCGA-ZJ-AAXD-01 20 54974388 54974388 G A CSTF1 Silent p.T337T 0.39 TCGA-ZJ-AAXD-01 22 31484046 31484046 G A SMTN Silent p.L49L 0.25 TCGA-ZJ-AAXD-01 22 32017356 32017356 G A PISD Missense_Mutation p.P187S 0.40 deleterious(0.03) possibly_damaging(0.771) TCGA-ZJ-AAXD-01 22 42294708 42294708 G T SREBF2 Missense_Mutation p.W887C 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXD-01 2 128364984 128364984 G T MYO7B Missense_Mutation p.Q876H 0.17 tolerated(0.06) possibly_damaging(0.663) TCGA-ZJ-AAXD-01 2 131356330 131356330 C T CFC1 Silent p.Q44Q 0.28 TCGA-ZJ-AAXD-01 2 135596205 135596205 C G ACMSD 5'UTR 0.39 TCGA-ZJ-AAXD-01 2 148685886 148685886 C A ACVR2A 3'UTR 0.36 TCGA-ZJ-AAXD-01 2 169020259 169020259 G C STK39 Missense_Mutation p.Q188E 0.23 deleterious(0) probably_damaging(0.983) TCGA-ZJ-AAXD-01 2 202137384 202137384 G C CASP8 Missense_Mutation p.E204D 0.21 deleterious(0.03) probably_damaging(0.994) TCGA-ZJ-AAXD-01 2 6872859 6872859 G A LINC00487 RNA 0.26 TCGA-ZJ-AAXD-01 2 86479173 86479173 G C REEP1 Silent p.V115V 0.50 TCGA-ZJ-AAXD-01 3 151165722 151165722 C T IGSF10 Missense_Mutation p.E683K 0.29 tolerated(0.1) benign(0.218) TCGA-ZJ-AAXD-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.53 deleterious(0.04) probably_damaging(0.96) TCGA-ZJ-AAXD-01 3 179462882 179462882 G A USP13 Missense_Mutation p.R529K 0.24 tolerated(0.74) benign(0.216) TCGA-ZJ-AAXD-01 3 188592518 188592518 C A LPP 3'UTR 0.26 TCGA-ZJ-AAXD-01 3 38294537 38294537 C G OXSR1 3'UTR 0.45 TCGA-ZJ-AAXD-01 5 100143808 100143808 C G ST8SIA4 3'UTR 0.32 TCGA-ZJ-AAXD-01 5 13716674 13716674 A G DNAH5 Silent p.F4277F 0.06 TCGA-ZJ-AAXD-01 5 156670643 156670643 G A ITK Silent p.V357V 0.12 TCGA-ZJ-AAXD-01 5 170222290 170222290 C G GABRP Missense_Mutation p.L107V 0.36 tolerated(0.06) possibly_damaging(0.755) TCGA-ZJ-AAXD-01 5 44809177 44809177 C T MRPS30 Missense_Mutation p.A38V 0.50 tolerated(0.08) benign(0.016) TCGA-ZJ-AAXD-01 6 134491008 134491008 G C SGK1 3'UTR 0.69 TCGA-ZJ-AAXD-01 6 26285398 26285398 G C HIST1H4H 3'UTR 0.33 TCGA-ZJ-AAXD-01 6 56480220 56480220 C T DST Intron 0.75 TCGA-ZJ-AAXD-01 6 86346843 86346843 G A SYNCRIP Missense_Mutation p.P170S 0.54 deleterious(0) possibly_damaging(0.836) TCGA-ZJ-AAXD-01 7 105615293 105615293 G C CDHR3 Missense_Mutation p.G17A 0.17 tolerated(0.32) benign(0.376) TCGA-ZJ-AAXD-01 7 12401051 12401051 G C VWDE Missense_Mutation p.Q999E 0.42 tolerated(0.29) possibly_damaging(0.449) TCGA-ZJ-AAXD-01 7 136849082 136849082 C G hsa-mir-490 Intron 0.22 TCGA-ZJ-AAXD-01 7 1487276 1487276 G C MICALL2 Missense_Mutation p.P154A 0.38 tolerated(0.1) benign(0.023) TCGA-ZJ-AAXD-01 7 48443305 48443305 C G ABCA13 Missense_Mutation p.Q3967E 0.44 benign(0.037) TCGA-ZJ-AAXD-01 7 95614198 95614198 G C DYNC1I1 Missense_Mutation p.D235H 0.23 deleterious(0.03) probably_damaging(0.933) TCGA-ZJ-AAXD-01 8 103284852 103284852 C T UBR5 Missense_Mutation p.R2293Q 0.26 deleterious(0) possibly_damaging(0.78) TCGA-ZJ-AAXD-01 8 120429126 120429126 C G NOV Nonsense_Mutation p.S76* 0.60 TCGA-ZJ-AAXD-01 8 126450384 126450384 G A TRIB1 3'UTR 0.19 TCGA-ZJ-AAXD-01 8 12879675 12879675 G A KIAA1456 3'UTR 0.29 TCGA-ZJ-AAXD-01 8 22005772 22005772 G A LGI3 Silent p.F516F 0.25 TCGA-ZJ-AAXD-01 8 30702242 30702242 G C TEX15 Missense_Mutation p.S1431C 0.38 tolerated(0.06) possibly_damaging(0.891) TCGA-ZJ-AAXD-01 8 41551471 41551471 C G ANK1 Silent p.P1200P 0.15 TCGA-ZJ-AAXD-01 8 48962470 48962470 G C UBE2V2 Missense_Mutation p.E75Q 0.22 tolerated(0.1) benign(0.034) TCGA-ZJ-AAXD-01 8 73849963 73849963 G T KCNB2 Missense_Mutation p.Q791H 0.29 tolerated_low_confidence(0.07) benign(0.401) TCGA-ZJ-AAXD-01 9 125719313 125719313 C G RABGAP1 5'UTR 0.58 TCGA-ZJ-AAXD-01 9 129453135 129453135 G C LMX1B Missense_Mutation p.S116T 0.33 tolerated(0.12) possibly_damaging(0.882) TCGA-ZJ-AAXD-01 9 132084848 132084848 A G C9orf106 RNA 0.40 TCGA-ZJ-AAXD-01 9 140352022 140352022 C T NSMF Silent p.Q155Q 0.40 TCGA-ZJ-AAXD-01 9 140473307 140473307 G A DPH7 5'UTR 0.33 TCGA-ZJ-AAXD-01 9 98669365 98669365 C G ERCC6L2 Missense_Mutation p.F211L 0.36 deleterious(0.01) probably_damaging(0.934) TCGA-ZJ-AAXD-01 X 114425481 114425481 G T RBMXL3 Missense_Mutation p.G493W 0.29 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-ZJ-AAXD-01 X 1404777 1404777 C G CSF2RA Missense_Mutation p.F61L 0.04 tolerated(0.55) benign(0.003) TCGA-ZJ-AAXD-01 X 144903991 144903991 C A SLITRK2 Silent p.I16I 0.36 TCGA-ZJ-AAXD-01 X 144905473 144905473 C T SLITRK2 Silent p.P510P 0.10 TCGA-ZJ-AAXD-01 X 69595148 69595148 C T KIF4A Silent p.L625L 0.04 TCGA-ZJ-AAXD-01 X 73810612 73810612 T C RLIM 3'UTR 0.07 TCGA-ZJ-AAXD-01 X 79698843 79698843 G A FAM46D Missense_Mutation p.D269N 0.44 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXF-01 10 27436438 27436438 G A YME1L1 Missense_Mutation p.L110F 0.07 tolerated_low_confidence(0.76) benign(0.002) TCGA-ZJ-AAXF-01 10 27436439 27436439 G A YME1L1 Silent p.S109S 0.07 TCGA-ZJ-AAXF-01 10 5144827 5144827 C A AKR1C3 Silent p.I277I 0.19 TCGA-ZJ-AAXF-01 11 10673669 10673669 G A MRVI1 Missense_Mutation p.T43I 0.14 tolerated_low_confidence(0.09) benign(0.035) TCGA-ZJ-AAXF-01 11 34162119 34162119 G T NAT10 Silent p.S864S 0.12 TCGA-ZJ-AAXF-01 11 57067473 57067473 G A TNKS1BP1 3'UTR 0.10 TCGA-ZJ-AAXF-01 12 111757840 111757840 C T CUX2 Missense_Mutation p.P676L 0.12 tolerated(0.05) benign(0.009) TCGA-ZJ-AAXF-01 12 124156142 124156142 A C TCTN2 Silent p.A57A 0.10 TCGA-ZJ-AAXF-01 12 22354784 22354784 C G ST8SIA1 Missense_Mutation p.S258T 0.08 deleterious(0.04) benign(0.01) TCGA-ZJ-AAXF-01 12 49431877 49431877 C A KMT2D Missense_Mutation p.G3088W 0.10 probably_damaging(0.991) TCGA-ZJ-AAXF-01 13 46287374 46287374 G A SPERT Missense_Mutation p.A72T 0.19 tolerated_low_confidence(0.11) benign(0.032) TCGA-ZJ-AAXF-01 13 66879105 66879105 C A PCDH9 Missense_Mutation p.E1132D 0.12 tolerated(0.07) probably_damaging(0.997) TCGA-ZJ-AAXF-01 13 78492700 78492700 C T EDNRB Silent p.P93P 0.16 TCGA-ZJ-AAXF-01 13 79894604 79894604 G A RBM26 3'UTR 0.24 TCGA-ZJ-AAXF-01 14 103363706 103363706 C T TRAF3 Nonsense_Mutation p.R310* 0.25 TCGA-ZJ-AAXF-01 14 105421329 105421329 C T AHNAK2 Missense_Mutation p.D206N 0.13 benign(0.057) TCGA-ZJ-AAXF-01 14 35522657 35522657 G A FAM177A1 Silent p.P113P 0.28 TCGA-ZJ-AAXF-01 14 42361005 42361005 G T LRFN5 Missense_Mutation p.K646N 0.13 tolerated_low_confidence(0.13) benign(0.115) TCGA-ZJ-AAXF-01 14 75537670 75537670 C T ZC2HC1C Nonsense_Mutation p.R132* 0.06 TCGA-ZJ-AAXF-01 15 101121020 101121020 C T LINS Missense_Mutation p.E10K 0.22 deleterious(0.02) benign(0.001) TCGA-ZJ-AAXF-01 15 56032635 56032635 C G PRTG Missense_Mutation p.L114F 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-ZJ-AAXF-01 16 30566475 30566475 C T ZNF764 3'UTR 0.13 TCGA-ZJ-AAXF-01 16 4949059 4949059 G A PPL Silent p.G277G 0.05 TCGA-ZJ-AAXF-01 16 5046970 5046972 CTC - SEC14L5 In_Frame_Del p.L301del 0.15 TCGA-ZJ-AAXF-01 16 77228781 77228781 G A MON1B Missense_Mutation p.R342H 0.24 deleterious(0.03) possibly_damaging(0.575) TCGA-ZJ-AAXF-01 17 15234719 15234719 A G TEKT3 Missense_Mutation p.S62P 0.12 tolerated(0.28) benign(0.066) TCGA-ZJ-AAXF-01 17 37439030 37439030 C G FBXL20 Silent p.V191V 0.25 TCGA-ZJ-AAXF-01 17 37439089 37439089 C G FBXL20 Missense_Mutation p.E172Q 0.19 tolerated(0.23) benign(0.088) TCGA-ZJ-AAXF-01 19 41073631 41073631 C A SPTBN4 Missense_Mutation p.F2133L 0.43 tolerated(0.35) benign(0.044) TCGA-ZJ-AAXF-01 19 42907179 42907179 C T LIPE Silent p.P849P 0.08 TCGA-ZJ-AAXF-01 19 48733773 48733773 T C CARD8 Silent p.T319T 0.17 TCGA-ZJ-AAXF-01 19 52877676 52877676 C T ZNF880 Silent p.N88N 0.08 TCGA-ZJ-AAXF-01 1 12943003 12943003 C T PRAMEF4 Silent p.L71L 0.17 TCGA-ZJ-AAXF-01 1 151254104 151254104 C T RP11-126K1.2 Missense_Mutation p.R11Q 0.13 tolerated_low_confidence(0.17) benign(0.412) TCGA-ZJ-AAXF-01 1 151315081 151315081 C T RFX5 Missense_Mutation p.E478K 0.17 deleterious_low_confidence(0) benign(0.341) TCGA-ZJ-AAXF-01 1 153606633 153606633 C T CHTOP 5'UTR 0.19 TCGA-ZJ-AAXF-01 1 182636083 182636083 C T RGS8 Missense_Mutation p.G36R 0.09 deleterious(0.01) probably_damaging(0.953) TCGA-ZJ-AAXF-01 1 226128717 226128717 C T LEFTY2 Missense_Mutation p.V42I 0.17 tolerated(0.25) benign(0.035) TCGA-ZJ-AAXF-01 1 242020676 242020676 C T EXO1 Silent p.L145L 0.06 TCGA-ZJ-AAXF-01 1 33330086 33330086 T A FNDC5 Intron 0.26 TCGA-ZJ-AAXF-01 1 33330087 33330087 G T FNDC5 Intron 0.25 TCGA-ZJ-AAXF-01 1 74507075 74507075 C T LRRIQ3 Missense_Mutation p.E514K 0.21 deleterious(0.02) benign(0.367) TCGA-ZJ-AAXF-01 20 31995771 31995771 C T SNTA1 3'UTR 0.07 TCGA-ZJ-AAXF-01 20 61510506 61510506 C T DIDO1 3'UTR 0.15 TCGA-ZJ-AAXF-01 21 41550865 41550865 G A DSCAM Missense_Mutation p.A979V 0.23 deleterious(0) probably_damaging(0.946) TCGA-ZJ-AAXF-01 21 42837277 42837277 C T TMPRSS2 3'UTR 0.13 TCGA-ZJ-AAXF-01 2 105889313 105889313 G T TGFBRAP1 Silent p.L657L 0.37 TCGA-ZJ-AAXF-01 2 116538477 116538477 C T DPP10 Silent p.R467R 0.18 TCGA-ZJ-AAXF-01 2 175612893 175612893 C T CHRNA1 Missense_Mutation p.V470M 0.14 deleterious(0.01) probably_damaging(0.939) TCGA-ZJ-AAXF-01 2 210595033 210595033 C T MAP2 Missense_Mutation p.S1799L 0.22 deleterious(0) probably_damaging(0.985) TCGA-ZJ-AAXF-01 2 230655859 230655860 - T TRIP12 Frame_Shift_Ins p.H1434Afs*2 0.14 TCGA-ZJ-AAXF-01 2 231307770 231307770 G A SP100 Missense_Mutation p.E76K 0.05 deleterious(0.03) possibly_damaging(0.502) TCGA-ZJ-AAXF-01 2 233346284 233346284 T C ECEL1 Missense_Mutation p.S641G 0.08 tolerated(0.31) benign(0) TCGA-ZJ-AAXF-01 2 60687070 60687071 TC - BCL11A 3'UTR 0.08 TCGA-ZJ-AAXF-01 2 74005488 74005488 G A DUSP11 Silent p.L86L 0.19 TCGA-ZJ-AAXF-01 3 38651270 38651270 C T SCN5A Missense_Mutation p.D297N 0.09 tolerated(0.94) benign(0.005) TCGA-ZJ-AAXF-01 3 46750672 46750672 G A TMIE Missense_Mutation p.E90K 0.08 deleterious(0) probably_damaging(0.992) TCGA-ZJ-AAXF-01 3 49215459 49215459 G A C3orf84 Silent p.I75I 0.09 TCGA-ZJ-AAXF-01 3 64672371 64672371 C T ADAMTS9 Missense_Mutation p.G130E 0.15 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXF-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.23 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXF-01 4 184431662 184431662 G C ING2 Missense_Mutation p.A134P 0.13 tolerated(0.41) benign(0) TCGA-ZJ-AAXF-01 4 20985459 20985459 C T KCNIP4 Intron 0.11 TCGA-ZJ-AAXF-01 4 2747205 2747205 C T TNIP2 Missense_Mutation p.E209K 0.19 deleterious(0) benign(0.368) TCGA-ZJ-AAXF-01 4 2935710 2935710 G C MFSD10 5'UTR 0.39 TCGA-ZJ-AAXF-01 5 140176266 140176266 G A PCDHA2 Missense_Mutation p.A573T 0.04 tolerated_low_confidence(0.19) benign(0.007) TCGA-ZJ-AAXF-01 5 78417170 78417170 G C BHMT Missense_Mutation p.V203L 0.13 tolerated(0.07) benign(0.019) TCGA-ZJ-AAXF-01 6 144508645 144508645 G A STX11 3'UTR 0.07 TCGA-ZJ-AAXF-01 6 154360917 154360917 G A OPRM1 Missense_Mutation p.V173M 0.16 deleterious(0.01) probably_damaging(0.975) TCGA-ZJ-AAXF-01 6 33272254 33272254 C T TAPBP Missense_Mutation p.E344K 0.13 tolerated(0.83) benign(0.004) TCGA-ZJ-AAXF-01 7 47921565 47921565 C T PKD1L1 Missense_Mutation p.M1128I 0.07 deleterious(0.04) benign(0.166) TCGA-ZJ-AAXF-01 7 8153629 8153629 A G ICA1 Missense_Mutation p.F459S 0.19 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXF-01 7 888245 888245 A G SUN1 Intron 0.08 TCGA-ZJ-AAXF-01 8 100999756 100999756 C T RGS22 Missense_Mutation p.R1037H 0.16 tolerated(0.15) benign(0.056) TCGA-ZJ-AAXF-01 8 124221919 124221919 C T FAM83A 3'UTR 0.09 TCGA-ZJ-AAXF-01 8 144992827 144992827 C T PLEC Missense_Mutation p.R3858H 0.18 benign(0.273) TCGA-ZJ-AAXF-01 8 145095564 145095564 G A SPATC1 Missense_Mutation p.G288R 0.16 tolerated_low_confidence(0.11) benign(0.011) TCGA-ZJ-AAXF-01 8 21955237 21955237 C T FAM160B2 Nonsense_Mutation p.R138* 0.07 TCGA-ZJ-AAXF-01 8 70476174 70476174 G A SULF1 5'UTR 0.18 TCGA-ZJ-AAXF-01 9 133924412 133924412 G A LAMC3 Missense_Mutation p.E509K 0.15 deleterious(0.05) benign(0.014) TCGA-ZJ-AAXF-01 9 140195083 140195083 C A NRARP 3'UTR 0.05 TCGA-ZJ-AAXF-01 9 14868979 14868979 G A FREM1 5'UTR 0.09 TCGA-ZJ-AAXF-01 X 107975897 107975897 C T IRS4 Silent p.P1226P 0.12 TCGA-ZJ-AAXF-01 X 135591295 135591295 G A HTATSF1 Missense_Mutation p.E294K 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-ZJ-AAXF-01 X 153664096 153664096 C T ATP6AP1 Silent p.P424P 0.33 TCGA-ZJ-AAXI-01 10 105787320 105787320 G C SLK 3'UTR 0.06 TCGA-ZJ-AAXI-01 10 29769616 29769616 C G SVIL Missense_Mutation p.D1743H 0.24 deleterious(0.01) probably_damaging(0.913) TCGA-ZJ-AAXI-01 10 89653829 89653829 G A PTEN Missense_Mutation p.E43K 0.12 deleterious(0.04) benign(0.259) TCGA-ZJ-AAXI-01 10 96317907 96317907 G C HELLS Missense_Mutation p.K96N 0.04 deleterious(0.02) possibly_damaging(0.548) TCGA-ZJ-AAXI-01 10 96708903 96708903 G A CYP2C9 Silent p.P227P 0.21 TCGA-ZJ-AAXI-01 11 107197555 107197555 G C CWF19L2 3'UTR 0.15 TCGA-ZJ-AAXI-01 11 26714032 26714032 C T SLC5A12 Intron 0.32 TCGA-ZJ-AAXI-01 11 26743247 26743247 G C SLC5A12 Missense_Mutation p.N5K 0.41 tolerated(0.15) benign(0.002) TCGA-ZJ-AAXI-01 11 5536963 5536963 C G UBQLNL Missense_Mutation p.E237Q 0.22 deleterious(0) possibly_damaging(0.537) TCGA-ZJ-AAXI-01 11 5799567 5799567 C G OR52N5 Missense_Mutation p.E100Q 0.18 deleterious(0.02) benign(0.213) TCGA-ZJ-AAXI-01 11 67759118 67759118 G A UNC93B1 Missense_Mutation p.P564S 0.56 tolerated(0.64) benign(0.001) TCGA-ZJ-AAXI-01 12 107245297 107245297 C T RIC8B Missense_Mutation p.R411C 0.08 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXI-01 12 107937767 107937767 C T BTBD11 Silent p.H447H 0.61 TCGA-ZJ-AAXI-01 12 120935883 120935883 A T DYNLL1 Missense_Mutation p.D47V 0.10 deleterious(0) probably_damaging(0.983) TCGA-ZJ-AAXI-01 12 52100266 52100266 G A SCN8A Missense_Mutation p.E468K 0.07 tolerated(0.94) benign(0.008) TCGA-ZJ-AAXI-01 12 57348899 57348899 G A RDH16 Silent p.P121P 0.21 TCGA-ZJ-AAXI-01 12 62777901 62777901 G A USP15 Missense_Mutation p.D431N 0.10 tolerated(0.14) probably_damaging(0.924) TCGA-ZJ-AAXI-01 12 73057242 73057242 C T TRHDE 3'UTR 0.08 TCGA-ZJ-AAXI-01 12 99288536 99288536 C G ANKS1B Intron 0.50 TCGA-ZJ-AAXI-01 13 115091673 115091673 C T CHAMP1 Missense_Mutation p.H786Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-ZJ-AAXI-01 13 70275880 70275880 T G KLHL1 Missense_Mutation p.N734T 0.03 tolerated(0.27) benign(0.101) TCGA-ZJ-AAXI-01 13 93518730 93518730 C G GPC5 3'UTR 0.17 TCGA-ZJ-AAXI-01 14 30100012 30100012 G A PRKD1 Silent p.I536I 0.10 TCGA-ZJ-AAXI-01 14 30107940 30107940 C T PRKD1 Silent p.K289K 0.36 TCGA-ZJ-AAXI-01 14 51223266 51223266 C T NIN Missense_Mutation p.M1494I 0.10 tolerated(0.07) benign(0.012) TCGA-ZJ-AAXI-01 15 97328472 97328472 C T SPATA8 3'UTR 0.21 TCGA-ZJ-AAXI-01 16 72984703 72984703 G A ZFHX3 Silent p.L961L 0.20 TCGA-ZJ-AAXI-01 16 77317931 77317931 G C ADAMTS18 Missense_Mutation p.H1196Q 0.41 deleterious(0.02) benign(0.392) TCGA-ZJ-AAXI-01 17 14249074 14249074 C T HS3ST3B1 3'UTR 0.14 TCGA-ZJ-AAXI-01 17 19680901 19680901 C A ULK2 Silent p.V1015V 0.48 TCGA-ZJ-AAXI-01 17 2604559 2604559 C T CLUH Silent p.Q262Q 0.20 TCGA-ZJ-AAXI-01 17 3101596 3101596 C G OR1A2 Missense_Mutation p.L262V 0.14 tolerated(1) possibly_damaging(0.9) TCGA-ZJ-AAXI-01 17 41164204 41164204 C T IFI35 Silent p.H10H 0.53 TCGA-ZJ-AAXI-01 17 44117149 44117149 T C KANSL1 Missense_Mutation p.R708G 0.29 deleterious(0.01) possibly_damaging(0.755) TCGA-ZJ-AAXI-01 17 61511936 61511936 C G CYB561 Missense_Mutation p.E195Q 0.15 tolerated(0.49) benign(0.004) TCGA-ZJ-AAXI-01 18 65181734 65181734 C T DSEL Missense_Mutation p.D48N 0.25 tolerated_low_confidence(0.33) benign(0.003) TCGA-ZJ-AAXI-01 19 34180272 34180272 G A CHST8 Silent p.T35T 0.21 TCGA-ZJ-AAXI-01 19 44636918 44636918 G C ZNF225 3'UTR 0.24 TCGA-ZJ-AAXI-01 19 49547420 49547421 - C CGB5 5'UTR 0.27 TCGA-ZJ-AAXI-01 19 50762515 50762515 C T MYH14 Missense_Mutation p.R783W 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXI-01 19 7812212 7812212 C T CD209 Missense_Mutation p.R29Q 0.14 tolerated(0.28) benign(0.027) TCGA-ZJ-AAXI-01 1 114306576 114306576 T A RSBN1 3'UTR 0.11 TCGA-ZJ-AAXI-01 1 118526466 118526466 G A SPAG17 Missense_Mutation p.T1947I 0.47 tolerated(0.18) benign(0.01) TCGA-ZJ-AAXI-01 1 144892203 144892203 T A PDE4DIP Intron 0.07 TCGA-ZJ-AAXI-01 1 145015938 145015938 C T RP11-326G21.1 5'Flank 0.12 TCGA-ZJ-AAXI-01 1 156640422 156640422 C T NES Silent p.A1186A 0.09 TCGA-ZJ-AAXI-01 1 163046326 163046326 C G RGS4 3'UTR 0.30 TCGA-ZJ-AAXI-01 1 171672557 171672557 G T VAMP4 3'UTR 0.17 TCGA-ZJ-AAXI-01 1 196946740 196946740 G A CFHR5 5'UTR 0.44 TCGA-ZJ-AAXI-01 1 47398409 47398409 G A CYP4A11 Intron 0.10 TCGA-ZJ-AAXI-01 1 51875284 51875284 C T EPS15 Missense_Mutation p.E400K 0.10 deleterious(0.02) benign(0.236) TCGA-ZJ-AAXI-01 1 6206415 6206415 G T CHD5 Silent p.P553P 0.50 TCGA-ZJ-AAXI-01 1 99470138 99470138 G A LPPR5 Silent p.F30F 0.06 TCGA-ZJ-AAXI-01 20 10629344 10629344 G C JAG1 Missense_Mutation p.I474M 0.14 tolerated(0.12) benign(0.018) TCGA-ZJ-AAXI-01 20 58348350 58348350 C T PHACTR3 Silent p.F256F 0.11 TCGA-ZJ-AAXI-01 20 62631008 62631008 C T PRPF6 Missense_Mutation p.H307Y 0.18 deleterious(0.03) benign(0.001) TCGA-ZJ-AAXI-01 22 22985523 22985523 A G GGTLC2 5'Flank 0.31 TCGA-ZJ-AAXI-01 22 25023322 25023322 C T GGT1 Intron 0.28 TCGA-ZJ-AAXI-01 22 28559344 28559344 C T TTC28 Missense_Mutation p.E393K 0.47 tolerated(0.05) probably_damaging(0.999) TCGA-ZJ-AAXI-01 2 11053959 11053959 G A KCNF1 Silent p.K469K 0.15 TCGA-ZJ-AAXI-01 2 167262275 167262275 G A SCN7A Nonsense_Mutation p.R1622* 0.17 TCGA-ZJ-AAXI-01 2 201499608 201499608 C T AOX1 Silent p.Y772Y 0.38 TCGA-ZJ-AAXI-01 2 204303118 204303118 C G RAPH1 3'UTR 0.55 TCGA-ZJ-AAXI-01 2 242066691 242066691 C T PASK Missense_Mutation p.E547K 0.30 tolerated(0.09) possibly_damaging(0.559) TCGA-ZJ-AAXI-01 2 3200695 3200695 C T TSSC1 Missense_Mutation p.A204T 0.37 deleterious(0.01) probably_damaging(0.956) TCGA-ZJ-AAXI-01 2 32093080 32093080 C T MEMO1 3'UTR 0.27 TCGA-ZJ-AAXI-01 2 71160248 71160248 G A VAX2 Missense_Mutation p.E263K 0.27 tolerated_low_confidence(0.3) benign(0.001) TCGA-ZJ-AAXI-01 3 126062304 126062305 - GAAGGCAC KLF15 3'UTR 0.38 TCGA-ZJ-AAXI-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.09 deleterious(0.02) probably_damaging(0.984) TCGA-ZJ-AAXI-01 3 183535833 183535833 G C MAP6D1 Silent p.V156V 0.12 TCGA-ZJ-AAXI-01 3 195509548 195509548 G T MUC4 Nonsense_Mutation p.S2968* 0.37 TCGA-ZJ-AAXI-01 3 196746318 196746318 C T MFI2 Intron 0.21 TCGA-ZJ-AAXI-01 3 42733453 42733453 C T KLHL40 Missense_Mutation p.R612W 0.45 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXI-01 3 45989298 45989298 C T CXCR6 3'UTR 0.24 TCGA-ZJ-AAXI-01 3 86116094 86116094 G C CADM2 3'Flank 0.26 TCGA-ZJ-AAXI-01 3 88189446 88189446 C T ZNF654 Missense_Mutation p.S329L 0.10 tolerated(0.17) benign(0.114) TCGA-ZJ-AAXI-01 4 153258983 153258983 G A FBXW7 Nonsense_Mutation p.R278* 0.85 TCGA-ZJ-AAXI-01 4 156724866 156724866 G A GUCY1B3 Missense_Mutation p.D502N 0.09 tolerated(0.05) benign(0.169) TCGA-ZJ-AAXI-01 4 173232790 173232790 C A GALNTL6 Nonsense_Mutation p.Y91* 0.11 TCGA-ZJ-AAXI-01 4 176554412 176554412 C G GPM6A 3'UTR 0.29 TCGA-ZJ-AAXI-01 4 184175103 184175103 G A WWC2 Missense_Mutation p.E383K 0.09 tolerated(0.28) benign(0.008) TCGA-ZJ-AAXI-01 4 22389381 22389381 C T GPR125 Missense_Mutation p.D1305N 0.71 deleterious(0) benign(0.144) TCGA-ZJ-AAXI-01 5 141312945 141312945 C T KIAA0141 Silent p.G292G 0.38 TCGA-ZJ-AAXI-01 5 149677185 149677185 G A ARSI Silent p.G434G 0.48 TCGA-ZJ-AAXI-01 5 171299934 171299934 C T FBXW11 Missense_Mutation p.A407T 0.84 tolerated(0.06) possibly_damaging(0.741) TCGA-ZJ-AAXI-01 5 56255335 56255335 G A MIER3 5'UTR 0.48 TCGA-ZJ-AAXI-01 5 71016357 71016357 C T CARTPT Missense_Mutation p.A89V 0.11 deleterious(0) possibly_damaging(0.767) TCGA-ZJ-AAXI-01 6 110300782 110300782 T C GPR6 Missense_Mutation p.V156A 0.59 deleterious(0.04) possibly_damaging(0.63) TCGA-ZJ-AAXI-01 6 150023019 150023019 G A LATS1 Nonsense_Mutation p.R82* 0.12 TCGA-ZJ-AAXI-01 6 37142247 37142247 T A PIM1 3'UTR 0.52 TCGA-ZJ-AAXI-01 6 56035909 56035909 G A COL21A1 Nonsense_Mutation p.R220* 0.14 TCGA-ZJ-AAXI-01 6 70637892 70637892 T A COL19A1 Missense_Mutation p.W120R 0.13 deleterious(0) unknown(0) TCGA-ZJ-AAXI-01 6 79735310 79735310 C G PHIP Missense_Mutation p.K283N 0.11 tolerated(0.34) probably_damaging(0.991) TCGA-ZJ-AAXI-01 6 90572166 90572166 A G CASP8AP2 RNA 0.42 TCGA-ZJ-AAXI-01 7 100279110 100279110 C - GIGYF1 3'UTR 0.13 TCGA-ZJ-AAXI-01 7 101200735 101200735 C T COL26A1 Silent p.P416P 0.15 TCGA-ZJ-AAXI-01 7 119914967 119914967 A G KCND2 Missense_Mutation p.H94R 0.42 deleterious(0.03) benign(0.033) TCGA-ZJ-AAXI-01 7 140227188 140227188 G A DENND2A Missense_Mutation p.S812L 0.25 deleterious(0.01) probably_damaging(0.946) TCGA-ZJ-AAXI-01 7 1784745 1784745 C G ELFN1 Silent p.L171L 0.29 TCGA-ZJ-AAXI-01 7 28997690 28997690 G A AC005013.5 Intron 0.08 TCGA-ZJ-AAXI-01 7 35271152 35271152 C T TBX20 Missense_Mutation p.G285E 0.05 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXI-01 7 86825953 86825953 C G TMEM243 Nonstop_Mutation p.*119Sext*19 0.15 TCGA-ZJ-AAXI-01 7 97834789 97834789 C T LMTK2 Silent p.D1499D 0.16 TCGA-ZJ-AAXI-01 8 70501219 70501219 G T SULF1 Missense_Mutation p.D193Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXI-01 8 91635720 91635720 G A TMEM64 3'UTR 0.08 TCGA-ZJ-AAXI-01 9 104334625 104334625 C T GRIN3A 3'UTR 0.19 TCGA-ZJ-AAXI-01 9 112018738 112018738 C T EPB41L4B Missense_Mutation p.E259K 0.11 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXI-01 9 17466756 17466756 T A CNTLN Missense_Mutation p.M1241K 0.39 deleterious(0) possibly_damaging(0.533) TCGA-ZJ-AAXI-01 9 43627818 43627818 G A SPATA31A6 Missense_Mutation p.S290L 0.07 tolerated(0.52) benign(0) TCGA-ZJ-AAXI-01 9 88932167 88932167 C A ZCCHC6 Nonsense_Mutation p.E1081* 0.32 TCGA-ZJ-AAXI-01 X 103217002 103217002 T C TMSB15B 5'Flank 0.50 TCGA-ZJ-AAXI-01 X 135128529 135128529 G A SLC9A6 3'UTR 0.20 TCGA-ZJ-AAXI-01 X 138774081 138774081 G A MCF2 Intron 0.19 TCGA-ZJ-AAXI-01 X 144907116 144907116 C T SLITRK2 3'UTR 0.58 TCGA-ZJ-AAXI-01 X 153689807 153689807 C T PLXNA3 Silent p.F321F 0.16 TCGA-ZJ-AAXI-01 X 154156996 154156996 T C F8 Missense_Mutation p.E1690G 0.29 deleterious(0) possibly_damaging(0.786) TCGA-ZJ-AAXI-01 X 30845595 30845595 C T TAB3 3'UTR 0.70 TCGA-ZJ-AAXI-01 X 41206602 41206602 C T DDX3X Nonsense_Mutation p.R603* 0.34 TCGA-ZJ-AAXI-01 X 43656397 43656397 A G MAOB Missense_Mutation p.I198T 0.16 deleterious(0) probably_damaging(0.993) TCGA-ZJ-AAXI-01 X 45008745 45008745 G A CXorf36 3'UTR 0.22 TCGA-ZJ-AAXI-01 X 47486642 47486642 G A CFP Missense_Mutation p.R222C 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXI-01 X 70348997 70348997 G A MED12 Missense_Mutation p.R1170Q 0.55 probably_damaging(0.999) TCGA-ZJ-AAXJ-01 10 101950703 101950703 C G CHUK Missense_Mutation p.E711Q 0.33 tolerated(0.29) benign(0.071) TCGA-ZJ-AAXJ-01 10 119078414 119078414 C T PDZD8 Nonsense_Mutation p.W356* 0.57 TCGA-ZJ-AAXJ-01 10 124909310 124909310 G C HMX2 Missense_Mutation p.E165Q 0.71 deleterious(0.01) probably_damaging(0.951) TCGA-ZJ-AAXJ-01 10 64575634 64575634 G A EGR2 Silent p.N52N 0.46 TCGA-ZJ-AAXJ-01 11 1268443 1268443 C T MUC5B Missense_Mutation p.P3445S 0.36 unknown(0) TCGA-ZJ-AAXJ-01 11 14515294 14515294 C T COPB1 Missense_Mutation p.E129K 0.38 deleterious(0) probably_damaging(0.938) TCGA-ZJ-AAXJ-01 11 4608497 4608497 G A OR52I2 Missense_Mutation p.R152H 0.39 deleterious(0.02) benign(0.347) TCGA-ZJ-AAXJ-01 11 57508930 57508933 CCTT - C11orf31 5'Flank 0.36 TCGA-ZJ-AAXJ-01 11 59942936 59942936 G T MS4A6A Missense_Mutation p.S191Y 0.31 tolerated(1) benign(0.003) TCGA-ZJ-AAXJ-01 11 89531559 89531559 A T TRIM49 Missense_Mutation p.N366K 0.10 tolerated(0.79) benign(0.004) TCGA-ZJ-AAXJ-01 12 102791612 102791612 G C IGF1 3'UTR 0.27 TCGA-ZJ-AAXJ-01 12 26273797 26273797 C T BHLHE41 3'UTR 0.34 TCGA-ZJ-AAXJ-01 12 49463583 49463583 C A RHEBL1 5'UTR 0.52 TCGA-ZJ-AAXJ-01 12 50870232 50870232 G C LARP4 3'UTR 0.22 TCGA-ZJ-AAXJ-01 12 52309913 52309913 T C ACVRL1 Missense_Mutation p.L381P 0.43 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXJ-01 12 54449761 54449761 C T HOXC4 3'UTR 0.55 TCGA-ZJ-AAXJ-01 12 56666951 56666951 G A CS Nonsense_Mutation p.R440* 0.52 TCGA-ZJ-AAXJ-01 12 70048704 70048705 CA - BEST3 Frame_Shift_Del p.E664Gfs*11 0.11 TCGA-ZJ-AAXJ-01 12 95927390 95927390 G A USP44 Missense_Mutation p.R215C 0.44 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXJ-01 13 103446092 103446092 C T KDELC1 Missense_Mutation p.M151I 0.39 tolerated(0.12) possibly_damaging(0.844) TCGA-ZJ-AAXJ-01 13 28136552 28136552 G A LNX2 Nonsense_Mutation p.Q408* 0.26 TCGA-ZJ-AAXJ-01 13 39262280 39262280 C A FREM2 Missense_Mutation p.R267S 0.31 deleterious(0.02) benign(0.061) TCGA-ZJ-AAXJ-01 13 95858862 95858862 C T ABCC4 Missense_Mutation p.R362Q 0.27 deleterious(0.01) benign(0.273) TCGA-ZJ-AAXJ-01 13 99340734 99340735 - A SLC15A1 Frame_Shift_Ins p.P522Sfs*21 0.22 TCGA-ZJ-AAXJ-01 14 20923824 20923824 A G APEX1 Missense_Mutation p.K7R 0.06 tolerated(0.26) benign(0.007) TCGA-ZJ-AAXJ-01 14 21769330 21769330 C T RPGRIP1 Missense_Mutation p.R142C 0.29 deleterious(0) possibly_damaging(0.8) TCGA-ZJ-AAXJ-01 14 23992718 23992718 G A ZFHX2 Missense_Mutation p.R2145C 0.13 unknown(0) TCGA-ZJ-AAXJ-01 14 35592977 35592977 G A KIAA0391 Missense_Mutation p.D176N 0.36 tolerated(1) probably_damaging(0.982) TCGA-ZJ-AAXJ-01 14 62536357 62536357 C T SYT16 Missense_Mutation p.S187F 0.31 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXJ-01 14 63735863 63735863 G A RHOJ Missense_Mutation p.G72R 0.28 deleterious(0) probably_damaging(0.984) TCGA-ZJ-AAXJ-01 14 70926002 70926002 C T ADAM21 Missense_Mutation p.H596Y 0.34 deleterious(0.01) possibly_damaging(0.798) TCGA-ZJ-AAXJ-01 15 100256675 100256675 C T DKFZP779J2370 Missense_Mutation p.V110I 0.31 unknown(0) TCGA-ZJ-AAXJ-01 15 91578207 91578207 G A AC068831.10 RNA 0.39 TCGA-ZJ-AAXJ-01 16 11868288 11868288 G A ZC3H7A Missense_Mutation p.S236L 0.38 deleterious(0.03) benign(0.046) TCGA-ZJ-AAXJ-01 16 28885076 28885076 C T SH2B1 Silent p.L736L 0.35 TCGA-ZJ-AAXJ-01 16 31371109 31371109 C T ITGAX Silent p.F173F 0.28 TCGA-ZJ-AAXJ-01 16 46952533 46952533 G A GPT2 Missense_Mutation p.V301M 0.33 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXJ-01 16 5134677 5134677 G A FAM86A 3'UTR 0.36 TCGA-ZJ-AAXJ-01 16 55525825 55525825 C A MMP2 Missense_Mutation p.F431L 0.32 tolerated(0.14) benign(0.019) TCGA-ZJ-AAXJ-01 16 74923634 74923634 C T WDR59 Missense_Mutation p.R721Q 0.27 tolerated(0.56) benign(0.001) TCGA-ZJ-AAXJ-01 16 88901706 88901706 G A GALNS Silent p.L271L 0.31 TCGA-ZJ-AAXJ-01 17 10398553 10398553 C A MYH1 Nonsense_Mutation p.E1751* 0.36 TCGA-ZJ-AAXJ-01 17 18965438 18965439 - G SNORD3B-1 RNA 0.20 TCGA-ZJ-AAXJ-01 17 26890859 26890859 G A PIGS Missense_Mutation p.A118V 0.40 tolerated(0.14) benign(0.189) TCGA-ZJ-AAXJ-01 17 55083680 55083680 C T SCPEP1 3'UTR 0.48 TCGA-ZJ-AAXJ-01 17 61667252 61667252 T A DCAF7 3'Flank 0.46 TCGA-ZJ-AAXJ-01 17 73240796 73240796 C A GGA3 Silent p.V68V 0.90 TCGA-ZJ-AAXJ-01 17 74075533 74075533 C G ZACN Silent p.L37L 0.18 TCGA-ZJ-AAXJ-01 17 7560832 7560832 C A ATP1B2 3'UTR 0.34 TCGA-ZJ-AAXJ-01 17 80789715 80789718 GGTA - ZNF750 Frame_Shift_Del p.Y205Pfs*160 0.78 TCGA-ZJ-AAXJ-01 18 13621138 13621138 C T LDLRAD4 Silent p.I68I 0.45 TCGA-ZJ-AAXJ-01 18 23970127 23970127 A T TAF4B 3'UTR 0.38 TCGA-ZJ-AAXJ-01 18 32889618 32889618 C T ZNF271 RNA 0.52 TCGA-ZJ-AAXJ-01 18 33706618 33706618 G A SLC39A6 Missense_Mutation p.S118L 0.42 tolerated(0.3) benign(0) TCGA-ZJ-AAXJ-01 18 5401025 5401025 C T EPB41L3 Intron 0.45 TCGA-ZJ-AAXJ-01 18 67781787 67781787 G A RTTN Nonsense_Mutation p.R1193* 0.34 TCGA-ZJ-AAXJ-01 18 712608 712608 G A ENOSF1 5'Flank 0.30 TCGA-ZJ-AAXJ-01 18 72346279 72346279 C T ZNF407 Nonsense_Mutation p.Q1102* 0.32 TCGA-ZJ-AAXJ-01 19 13394116 13394116 C T CACNA1A Missense_Mutation p.E1263K 0.33 possibly_damaging(0.81) TCGA-ZJ-AAXJ-01 19 16539540 16539540 C T EPS15L1 Silent p.G177G 0.26 TCGA-ZJ-AAXJ-01 19 38385402 38385402 G A WDR87 Missense_Mutation p.S275L 0.09 benign(0.339) TCGA-ZJ-AAXJ-01 19 38572610 38572610 C G SIPA1L3 Silent p.S135S 0.07 TCGA-ZJ-AAXJ-01 19 4652946 4652946 A C TNFAIP8L1 3'UTR 0.31 TCGA-ZJ-AAXJ-01 19 50148367 50148367 G A SCAF1 Silent p.T28T 0.44 TCGA-ZJ-AAXJ-01 19 7152816 7152816 G C INSR Missense_Mutation p.Q718E 0.20 tolerated(0.66) benign(0.002) TCGA-ZJ-AAXJ-01 1 12919998 12919998 G A PRAMEF2 Silent p.T246T 0.32 TCGA-ZJ-AAXJ-01 1 144220791 144220791 A G NBPF8 Missense_Mutation p.S3571G 0.13 probably_damaging(0.933) TCGA-ZJ-AAXJ-01 1 148251803 148251803 T C NBPF20 3'UTR 0.45 TCGA-ZJ-AAXJ-01 1 151403202 151403202 C T POGZ Silent p.Q133Q 0.34 TCGA-ZJ-AAXJ-01 1 169582318 169582318 G A SELP Silent p.H208H 0.44 TCGA-ZJ-AAXJ-01 1 175355294 175355294 G A TNR Missense_Mutation p.R551W 0.59 deleterious(0) probably_damaging(0.997) TCGA-ZJ-AAXJ-01 1 177226445 177226445 C T BRINP2 Silent p.A198A 0.20 TCGA-ZJ-AAXJ-01 1 181767765 181767765 A T CACNA1E Missense_Mutation p.E2246V 0.20 tolerated(0.05) probably_damaging(0.95) TCGA-ZJ-AAXJ-01 1 184663435 184663435 T C EDEM3 Missense_Mutation p.N854S 0.25 tolerated_low_confidence(0.74) benign(0) TCGA-ZJ-AAXJ-01 1 190129815 190129815 G A BRINP3 Silent p.I389I 0.48 TCGA-ZJ-AAXJ-01 1 229773991 229773991 G C URB2 Missense_Mutation p.A1211P 0.34 deleterious(0.02) possibly_damaging(0.603) TCGA-ZJ-AAXJ-01 1 2519811 2519811 G A FAM213B Intron 0.37 TCGA-ZJ-AAXJ-01 1 32745196 32745196 T G LCK Intron 0.37 TCGA-ZJ-AAXJ-01 1 34090796 34090796 C T CSMD2 Silent p.K1745K 0.21 TCGA-ZJ-AAXJ-01 1 39384953 39384953 C T RHBDL2 5'UTR 0.35 TCGA-ZJ-AAXJ-01 1 43916874 43916874 C T SZT2 3'UTR 0.44 TCGA-ZJ-AAXJ-01 1 62734026 62734026 C T KANK4 Missense_Mutation p.E722K 0.50 tolerated(0.12) benign(0.008) TCGA-ZJ-AAXJ-01 22 18016794 18016794 C T CECR2 Nonsense_Mutation p.R350* 0.57 TCGA-ZJ-AAXJ-01 22 25123981 25123981 C T PIWIL3 Missense_Mutation p.D658N 0.34 deleterious(0.02) possibly_damaging(0.698) TCGA-ZJ-AAXJ-01 22 25498855 25498855 C G KIAA1671 Intron 0.33 TCGA-ZJ-AAXJ-01 22 40720853 40720853 C T TNRC6B 3'UTR 0.27 TCGA-ZJ-AAXJ-01 22 41257212 41257212 C T DNAJB7 Missense_Mutation p.V263M 0.30 tolerated(0.34) benign(0.032) TCGA-ZJ-AAXJ-01 22 47116892 47116892 A G CERK Missense_Mutation p.S55P 0.52 deleterious(0.01) benign(0.066) TCGA-ZJ-AAXJ-01 2 107459588 107459588 G A ST6GAL2 Silent p.A282A 0.53 TCGA-ZJ-AAXJ-01 2 138434140 138434140 C T THSD7B Silent p.L1599L 0.25 TCGA-ZJ-AAXJ-01 2 148730380 148730380 C T ORC4 Silent p.L51L 0.14 TCGA-ZJ-AAXJ-01 2 174052343 174052343 C T MLTK Missense_Mutation p.S136L 0.40 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXJ-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.41 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXJ-01 2 186678476 186678476 G C FSIP2 Missense_Mutation p.E6767Q 0.36 benign(0.193) TCGA-ZJ-AAXJ-01 2 187370533 187370533 G C ZC3H15 Missense_Mutation p.D311H 0.39 deleterious(0) possibly_damaging(0.507) TCGA-ZJ-AAXJ-01 2 20647596 20647596 G A RHOB Missense_Mutation p.D124N 0.46 deleterious(0.03) benign(0.378) TCGA-ZJ-AAXJ-01 2 215809791 215809791 C T ABCA12 Missense_Mutation p.R2426Q 0.60 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXJ-01 2 220422308 220422308 C T OBSL1 Missense_Mutation p.A1275T 0.10 tolerated(0.63) possibly_damaging(0.643) TCGA-ZJ-AAXJ-01 2 25467104 25467104 T C DNMT3A Missense_Mutation p.T591A 0.34 tolerated(0.45) benign(0) TCGA-ZJ-AAXJ-01 2 74750559 74750559 C T DQX1 Missense_Mutation p.V308I 0.44 tolerated(0.65) benign(0.003) TCGA-ZJ-AAXJ-01 3 146246449 146246449 C T PLSCR1 Silent p.A88A 0.38 TCGA-ZJ-AAXJ-01 3 147105464 147105464 G T ZIC4 3'UTR 0.47 TCGA-ZJ-AAXJ-01 3 187439839 187439839 G A BCL6 3'UTR 0.32 TCGA-ZJ-AAXJ-01 3 192517270 192517270 C A MB21D2 Silent p.L127L 0.19 TCGA-ZJ-AAXJ-01 3 22424366 22424366 G T HMGB1P5 RNA 0.17 TCGA-ZJ-AAXJ-01 3 57283572 57283572 A G APPL1 Missense_Mutation p.K350E 0.47 deleterious(0) benign(0.018) TCGA-ZJ-AAXJ-01 3 78649395 78649395 G - ROBO1 Frame_Shift_Del p.S1604Qfs*19 0.40 TCGA-ZJ-AAXJ-01 4 143191882 143191882 G A INPP4B Silent p.V183V 0.50 TCGA-ZJ-AAXJ-01 4 155665757 155665757 C T LRAT Silent p.S93S 0.50 TCGA-ZJ-AAXJ-01 4 15993899 15993899 C G PROM1 Missense_Mutation p.R628T 0.51 tolerated(0.35) benign(0.01) TCGA-ZJ-AAXJ-01 4 15993908 15993908 C G PROM1 Missense_Mutation p.G625A 0.50 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXJ-01 5 113798869 113798869 C A KCNN2 Nonsense_Mutation p.C375* 0.33 TCGA-ZJ-AAXJ-01 5 133644007 133644007 G A CDKL3 Missense_Mutation p.P396S 0.33 tolerated(0.74) benign(0.012) TCGA-ZJ-AAXJ-01 5 140248796 140248796 G A PCDHA11 Silent p.S36S 0.12 TCGA-ZJ-AAXJ-01 5 176678849 176678849 G A NSD1 Missense_Mutation p.R1587H 0.34 tolerated(0.15) benign(0.003) TCGA-ZJ-AAXJ-01 5 179563574 179563574 C G RASGEF1C Intron 0.41 TCGA-ZJ-AAXJ-01 5 21751960 21751960 G A CDH12 Silent p.L757L 0.14 TCGA-ZJ-AAXJ-01 5 40693689 40693689 C G PTGER4 3'UTR 0.21 TCGA-ZJ-AAXJ-01 5 9037065 9037065 C T SEMA5A 3'UTR 0.21 TCGA-ZJ-AAXJ-01 6 117884184 117884184 T G GOPC 3'UTR 0.38 TCGA-ZJ-AAXJ-01 6 137243689 137243689 G C SLC35D3 Silent p.L41L 0.35 TCGA-ZJ-AAXJ-01 6 137243735 137243735 G C SLC35D3 Missense_Mutation p.E57Q 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-ZJ-AAXJ-01 6 150131818 150131818 C T PCMT1 3'UTR 0.10 TCGA-ZJ-AAXJ-01 6 154360323 154360323 G A OPRM1 Missense_Mutation p.E10K 0.15 unknown(0) TCGA-ZJ-AAXJ-01 6 165693581 165693581 G A C6orf118 Nonsense_Mutation p.Q459* 0.23 TCGA-ZJ-AAXJ-01 6 26205070 26205070 G C HIST1H4E Silent p.V66V 0.32 TCGA-ZJ-AAXJ-01 6 28963827 28963827 G A ZNF311 Missense_Mutation p.L318F 0.23 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXJ-01 6 29761225 29761225 G A HLA-V Intron 0.41 TCGA-ZJ-AAXJ-01 6 30893099 30893099 G T VARS2 Nonsense_Mutation p.E938* 0.38 TCGA-ZJ-AAXJ-01 6 97629791 97629791 G C MMS22L Silent p.V791V 0.32 TCGA-ZJ-AAXJ-01 7 141831334 141831334 G A RP11-1220K2.2 Silent p.L109L 0.35 TCGA-ZJ-AAXJ-01 7 142759652 142759652 C T OR6W1P RNA 0.37 TCGA-ZJ-AAXJ-01 7 150094463 150094463 C G ZNF775 Missense_Mutation p.I298M 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-ZJ-AAXJ-01 7 39379503 39379503 G A POU6F2 Silent p.Q258Q 0.17 TCGA-ZJ-AAXJ-01 7 50135899 50135899 C T C7orf72 Missense_Mutation p.S73L 0.31 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-ZJ-AAXJ-01 7 72242449 72242449 G C TYW1B Silent p.L314L 0.23 TCGA-ZJ-AAXJ-01 7 72855706 72855706 C G BAZ1B 3'UTR 0.46 TCGA-ZJ-AAXJ-01 7 75610839 75610839 G A POR Missense_Mutation p.E216K 0.33 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXJ-01 7 83823893 83823894 - C SEMA3A Frame_Shift_Ins p.L4Vfs*3 0.28 TCGA-ZJ-AAXJ-01 8 144809013 144809015 GAG - FAM83H In_Frame_Del p.S873del 0.27 TCGA-ZJ-AAXJ-01 8 27099939 27099939 C T STMN4 Silent p.L28L 0.40 TCGA-ZJ-AAXJ-01 8 57213979 57213979 C T SDR16C5 3'UTR 0.31 TCGA-ZJ-AAXJ-01 8 99101736 99101736 C T C8orf47 Missense_Mutation p.A164V 0.11 tolerated(0.2) benign(0.051) TCGA-ZJ-AAXJ-01 9 113209300 113209300 C T SVEP1 Missense_Mutation p.E1381K 0.21 benign(0.297) TCGA-ZJ-AAXJ-01 9 127298408 127298408 G A NR6A1 Silent p.Y276Y 0.38 TCGA-ZJ-AAXJ-01 9 127662745 127662745 G A GOLGA1 Nonsense_Mutation p.Q383* 0.26 TCGA-ZJ-AAXJ-01 9 42368577 42368577 C T ANKRD20A2 Missense_Mutation p.R55C 0.12 deleterious(0.01) possibly_damaging(0.898) TCGA-ZJ-AAXJ-01 9 72920245 72920245 G C SMC5 Missense_Mutation p.S516T 0.31 tolerated(0.27) benign(0.099) TCGA-ZJ-AAXJ-01 X 119658572 119658572 T C CUL4B 3'Flank 0.23 TCGA-ZJ-AAXJ-01 X 132161355 132161355 G C USP26 Silent p.P298P 0.29 TCGA-ZJ-AAXJ-01 X 133700127 133700127 C G PLAC1 Missense_Mutation p.D196H 0.33 tolerated(0.08) benign(0.025) TCGA-ZJ-AAXJ-01 X 135581935 135581935 C T HTATSF1 Missense_Mutation p.S122L 0.37 tolerated(0.07) benign(0.008) TCGA-ZJ-AAXJ-01 X 14548137 14548137 G T GLRA2 5'UTR 0.33 TCGA-ZJ-AAXJ-01 X 151999289 151999289 C T CETN2 5'UTR 0.24 TCGA-ZJ-AAXJ-01 X 2832606 2832606 G A ARSD Intron 0.31 TCGA-ZJ-AAXJ-01 X 47101660 47101660 G A USP11 Silent p.L496L 0.42 TCGA-ZJ-AAXJ-01 X 65393489 65393489 G A HEPH Silent p.P211P 0.23 TCGA-ZJ-AAXJ-01 X 69176877 69176877 A G EDA Missense_Mutation p.M133V 0.25 tolerated_low_confidence(0.4) unknown(0) TCGA-ZJ-AAXJ-01 X 69425077 69425077 G A DGAT2L6 3'UTR 0.46 TCGA-ZJ-AAXJ-01 X 69624607 69624607 G C KIF4A Missense_Mutation p.E945Q 0.33 tolerated(0.08) benign(0.421) TCGA-ZJ-AAXJ-01 X 71347066 71347066 G T RGAG4 3'UTR 0.47 TCGA-ZJ-AAXJ-01 X 84559351 84559351 C G POF1B Missense_Mutation p.E522Q 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-ZJ-AAXJ-01 X 86877267 86877267 A G KLHL4 Silent p.E327E 0.41 TCGA-ZJ-AAXN-01 11 70315531 70315531 C T SHANK2 3'Flank 0.28 TCGA-ZJ-AAXN-01 11 89938730 89938730 C T CHORDC1 Missense_Mutation p.M189I 0.15 deleterious(0.01) possibly_damaging(0.733) TCGA-ZJ-AAXN-01 11 96124042 96124042 G A JRKL Missense_Mutation p.E77K 0.18 tolerated(0.26) benign(0.156) TCGA-ZJ-AAXN-01 12 100706309 100706309 G A SCYL2 Missense_Mutation p.E244K 0.32 tolerated(0.36) benign(0.21) TCGA-ZJ-AAXN-01 12 130015676 130015676 C T TMEM132D Missense_Mutation p.R348H 0.13 deleterious(0.01) benign(0.171) TCGA-ZJ-AAXN-01 12 27116299 27116299 A G FGFR1OP2 Missense_Mutation p.I179V 0.40 tolerated(0.08) benign(0.1) TCGA-ZJ-AAXN-01 12 46754463 46754464 AT - SLC38A2 3'UTR 0.28 TCGA-ZJ-AAXN-01 12 50189919 50189919 G T NCKAP5L Missense_Mutation p.P575H 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-ZJ-AAXN-01 13 25457296 25457296 C T CENPJ 3'UTR 0.31 TCGA-ZJ-AAXN-01 13 25458180 25458180 C T CENPJ Missense_Mutation p.D1249N 0.27 deleterious(0) probably_damaging(0.993) TCGA-ZJ-AAXN-01 13 40261876 40261876 C T COG6 Nonsense_Mutation p.Q317* 0.43 TCGA-ZJ-AAXN-01 13 42293844 42293844 C A VWA8 Missense_Mutation p.R1000L 0.31 deleterious(0) possibly_damaging(0.777) TCGA-ZJ-AAXN-01 14 94845590 94845590 C A SERPINA1 Intron 0.33 TCGA-ZJ-AAXN-01 15 43533077 43533077 A C TGM5 Missense_Mutation p.L325W 0.33 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXN-01 15 55971486 55971486 G A PRTG Silent p.N377N 0.12 TCGA-ZJ-AAXN-01 15 74659791 74659791 G T CYP11A1 Missense_Mutation p.R46S 0.19 deleterious(0) possibly_damaging(0.468) TCGA-ZJ-AAXN-01 16 32077427 32077428 - G IGHV3OR16-9 Frame_Shift_Ins p.S17Vfs*15 0.19 TCGA-ZJ-AAXN-01 16 5041924 5041924 G A SEC14L5 Missense_Mutation p.R187H 0.40 tolerated(0.12) benign(0.002) TCGA-ZJ-AAXN-01 16 77242391 77242391 G C SYCE1L Missense_Mutation p.E71Q 0.45 deleterious(0) possibly_damaging(0.527) TCGA-ZJ-AAXN-01 17 26982436 26982436 G A SDF2 Missense_Mutation p.R73W 0.49 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXN-01 17 44127949 44127949 C A KANSL1 Missense_Mutation p.R657L 0.29 deleterious(0) possibly_damaging(0.87) TCGA-ZJ-AAXN-01 17 63526051 63526051 G C AXIN2 3'UTR 0.39 TCGA-ZJ-AAXN-01 17 73739885 73739885 C T ITGB4 Silent p.D1018D 0.51 TCGA-ZJ-AAXN-01 18 35145461 35145461 C T CELF4 Missense_Mutation p.M48I 0.68 deleterious(0.03) benign(0.034) TCGA-ZJ-AAXN-01 19 10450324 10450324 G A ICAM3 5'UTR 0.38 TCGA-ZJ-AAXN-01 19 24270035 24270035 C T ZNF254 5'UTR 0.32 TCGA-ZJ-AAXN-01 19 40009770 40009770 G A SELV Silent p.E341E 0.24 TCGA-ZJ-AAXN-01 19 51519287 51519287 C T KLK10 Missense_Mutation p.R132Q 0.15 tolerated(0.15) benign(0.19) TCGA-ZJ-AAXN-01 19 54242664 54242664 C T MIR518A2 RNA 0.04 TCGA-ZJ-AAXN-01 1 10405906 10405906 C T KIF1B Missense_Mutation p.P1185L 0.06 deleterious(0) benign(0.098) TCGA-ZJ-AAXN-01 1 152282675 152282675 C A FLG Nonsense_Mutation p.E1563* 0.22 TCGA-ZJ-AAXN-01 1 155110733 155110733 G A SLC50A1 Silent p.R214R 0.35 TCGA-ZJ-AAXN-01 1 155112403 155112403 G C DPM3 3'UTR 0.32 TCGA-ZJ-AAXN-01 1 156031106 156031106 G A RAB25 5'UTR 0.36 TCGA-ZJ-AAXN-01 1 1663695 1663695 A G SLC35E2 3'UTR 0.33 TCGA-ZJ-AAXN-01 1 19235001 19235001 G T IFFO2 3'UTR 0.44 TCGA-ZJ-AAXN-01 1 200828686 200828686 T A CAMSAP2 3'UTR 0.82 TCGA-ZJ-AAXN-01 1 202462323 202462323 C T PPP1R12B Missense_Mutation p.R675C 0.26 deleterious(0.04) benign(0.006) TCGA-ZJ-AAXN-01 1 25227921 25227921 C T RUNX3 3'UTR 0.43 TCGA-ZJ-AAXN-01 1 2537785 2537785 G A MMEL1 Missense_Mutation p.R218W 0.58 deleterious(0.01) possibly_damaging(0.773) TCGA-ZJ-AAXN-01 1 28319961 28319961 C T EYA3 Missense_Mutation p.R418H 0.41 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXN-01 1 9787348 9787348 C G PIK3CD 3'UTR 0.21 TCGA-ZJ-AAXN-01 20 57415887 57415887 C T RP4-806M20.3 5'Flank 0.34 TCGA-ZJ-AAXN-01 21 33705638 33705638 G A URB1 Silent p.L1650L 0.08 TCGA-ZJ-AAXN-01 22 23162215 23162215 A G IGLV3-9 Missense_Mutation p.D103G 0.33 deleterious(0.02) possibly_damaging(0.529) TCGA-ZJ-AAXN-01 22 23811640 23811640 C T AP000345.1 RNA 0.32 TCGA-ZJ-AAXN-01 22 29115466 29115466 G C CHEK2 Silent p.V243V 0.43 TCGA-ZJ-AAXN-01 2 160084388 160084388 G A TANC1 Missense_Mutation p.R1321Q 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-ZJ-AAXN-01 2 8871203 8871203 C T KIDINS220 Missense_Mutation p.E1655K 0.49 deleterious_low_confidence(0) benign(0.426) TCGA-ZJ-AAXN-01 2 95815470 95815470 G A ZNF514 Missense_Mutation p.H254Y 0.37 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXN-01 3 11598070 11598070 G A ATG7 3'UTR 0.29 TCGA-ZJ-AAXN-01 3 157820608 157820608 G A SHOX2 Silent p.I162I 0.50 TCGA-ZJ-AAXN-01 3 189608619 189608619 T G TP63 Missense_Mutation p.F565C 0.27 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXN-01 3 48681103 48681103 G A CELSR3 Missense_Mutation p.R2725C 0.12 deleterious(0.03) probably_damaging(1) TCGA-ZJ-AAXN-01 3 9547755 9547755 G T LHFPL4 Missense_Mutation p.A180D 0.42 deleterious(0) probably_damaging(0.993) TCGA-ZJ-AAXN-01 4 121958640 121958640 A G NDNF Silent p.Y162Y 0.39 TCGA-ZJ-AAXN-01 4 164050113 164050113 G A NAF1 Missense_Mutation p.P474L 0.83 deleterious_low_confidence(0) benign(0.011) TCGA-ZJ-AAXN-01 4 89400653 89400653 C T HERC5 Missense_Mutation p.H578Y 0.07 tolerated(0.41) benign(0.005) TCGA-ZJ-AAXN-01 5 134109413 134109413 G A DDX46 Missense_Mutation p.E159K 0.30 deleterious(0.03) probably_damaging(0.931) TCGA-ZJ-AAXN-01 5 140216197 140216197 C T PCDHA7 Silent p.S743S 0.25 TCGA-ZJ-AAXN-01 5 140256612 140256612 G A PCDHA12 Missense_Mutation p.A519T 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.694) TCGA-ZJ-AAXN-01 5 180277510 180277510 T G ZFP62 Missense_Mutation p.S329R 0.33 tolerated(1) probably_damaging(0.998) TCGA-ZJ-AAXN-01 5 37183644 37183644 C T C5orf42 Missense_Mutation p.D1547N 0.28 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXN-01 5 64920161 64920161 G C TRIM23 5'UTR 0.39 TCGA-ZJ-AAXN-01 6 143081739 143081739 G A HIVEP2 Nonsense_Mutation p.Q1896* 0.28 TCGA-ZJ-AAXN-01 6 32052410 32052410 G A TNXB Silent p.S1075S 0.38 TCGA-ZJ-AAXN-01 6 35959550 35959550 C T SLC26A8 Silent p.A276A 0.33 TCGA-ZJ-AAXN-01 7 100679203 100679203 C A MUC17 Silent p.T1502T 0.36 TCGA-ZJ-AAXN-01 7 100818024 100818024 G A NAT16 Missense_Mutation p.A22V 0.38 tolerated_low_confidence(0.29) benign(0.001) TCGA-ZJ-AAXN-01 7 111617323 111617323 G A DOCK4 Missense_Mutation p.R189W 0.52 deleterious(0) probably_damaging(0.991) TCGA-ZJ-AAXN-01 7 114657577 114657577 C G MDFIC 3'UTR 0.32 TCGA-ZJ-AAXN-01 7 136912415 136912417 AGA - PTN 3'UTR 0.41 TCGA-ZJ-AAXN-01 7 139793937 139793937 T C KDM7A Silent p.G792G 0.32 TCGA-ZJ-AAXN-01 7 78256541 78256541 G T MAGI2 Missense_Mutation p.H145N 0.45 deleterious(0) possibly_damaging(0.453) TCGA-ZJ-AAXN-01 8 17228653 17228653 C T MTMR7 Missense_Mutation p.C68Y 0.25 tolerated(0.23) possibly_damaging(0.868) TCGA-ZJ-AAXN-01 8 24774779 24774779 G A NEFM Missense_Mutation p.E471K 0.42 deleterious(0.01) unknown(0) TCGA-ZJ-AAXN-01 8 2944626 2944626 G C CSMD1 Silent p.L2489L 0.36 TCGA-ZJ-AAXN-01 9 112705364 112705364 G A PALM2 Missense_Mutation p.A299T 0.41 tolerated(0.71) benign(0.002) TCGA-ZJ-AAXN-01 9 115946582 115946582 C T FKBP15 Missense_Mutation p.R569Q 0.56 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXN-01 9 67965007 67965007 C T ANKRD20A1 Silent p.V385V 0.21 TCGA-ZJ-AAXN-01 X 100613381 100613381 G C BTK Missense_Mutation p.P340R 0.40 tolerated(0.18) probably_damaging(0.949) TCGA-ZJ-AAXN-01 X 133119384 133119384 C T GPC3 Silent p.P31P 0.41 TCGA-ZJ-AAXN-01 X 154225312 154225312 C T F8 Silent p.K108K 0.35 TCGA-ZJ-AAXN-01 X 19008416 19008416 C T GPR64 3'UTR 0.37 TCGA-ZJ-AAXN-01 X 49072978 49072978 G T CACNA1F Missense_Mutation p.L1045M 0.39 deleterious(0.01) benign(0.029) TCGA-ZJ-AAXN-01 X 50135384 50135384 C T DGKK RNA 0.40 TCGA-ZJ-AAXN-01 X 51486859 51486859 C T GSPT2 Missense_Mutation p.S46L 0.23 tolerated_low_confidence(0.06) benign(0.002) TCGA-ZJ-AAXN-01 X 53615479 53615479 C T HUWE1 Missense_Mutation p.D1493N 0.34 benign(0.059) TCGA-ZJ-AAXN-01 X 84558483 84558483 C G POF1B Missense_Mutation p.K526N 0.04 deleterious(0) probably_damaging(0.988) TCGA-ZJ-AAXT-01 10 101163595 101163595 G A GOT1 Nonsense_Mutation p.Q227* 0.70 TCGA-ZJ-AAXT-01 10 28032233 28032233 G A MKX Missense_Mutation p.H38Y 0.53 deleterious_low_confidence(0) benign(0.053) TCGA-ZJ-AAXT-01 10 49929400 49929400 G A WDFY4 Silent p.T148T 0.38 TCGA-ZJ-AAXT-01 10 89717708 89717708 C T PTEN Nonsense_Mutation p.Q245* 0.44 TCGA-ZJ-AAXT-01 10 97818232 97818232 C G CCNJ 3'UTR 0.60 TCGA-ZJ-AAXT-01 11 111953090 111953090 C T C11orf57 Intron 0.32 TCGA-ZJ-AAXT-01 11 118376464 118376464 C A KMT2A Missense_Mutation p.P3286H 0.29 probably_damaging(0.999) TCGA-ZJ-AAXT-01 11 123676162 123676162 C T OR6M1 Missense_Mutation p.R299K 0.20 tolerated(0.91) benign(0.012) TCGA-ZJ-AAXT-01 11 132307155 132307155 C T OPCML Missense_Mutation p.A209T 0.09 deleterious(0.02) possibly_damaging(0.812) TCGA-ZJ-AAXT-01 11 18750133 18750133 G A PTPN5 3'UTR 0.33 TCGA-ZJ-AAXT-01 11 35253765 35253765 C T CD44 3'Flank 0.33 TCGA-ZJ-AAXT-01 11 35453917 35453917 C G PAMR1 Missense_Mutation p.R734T 0.31 deleterious(0.03) possibly_damaging(0.465) TCGA-ZJ-AAXT-01 11 62521022 62521022 G A ZBTB3 Missense_Mutation p.R89W 0.23 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXT-01 11 63141211 63141211 C T SLC22A9 Missense_Mutation p.S201L 0.28 tolerated(1) benign(0.013) TCGA-ZJ-AAXT-01 11 63676527 63676527 G C MARK2 Missense_Mutation p.E729Q 0.42 tolerated(0.06) possibly_damaging(0.833) TCGA-ZJ-AAXT-01 11 63676920 63676920 G T MARK2 3'UTR 0.28 TCGA-ZJ-AAXT-01 11 6432426 6432426 C T APBB1 Missense_Mutation p.R51H 0.43 tolerated(0.15) probably_damaging(0.923) TCGA-ZJ-AAXT-01 11 65350230 65350230 C T EHBP1L1 Missense_Mutation p.S696F 0.25 deleterious(0.04) benign(0.298) TCGA-ZJ-AAXT-01 11 6541291 6541291 C G DNHD1 Missense_Mutation p.L582V 0.24 possibly_damaging(0.701) TCGA-ZJ-AAXT-01 11 67259693 67259693 G T PITPNM1 Silent p.P1182P 0.24 TCGA-ZJ-AAXT-01 11 74178518 74178518 G A KCNE3 5'UTR 0.33 TCGA-ZJ-AAXT-01 11 89944461 89944461 C T CHORDC1 Missense_Mutation p.E119K 0.10 tolerated(0.33) benign(0.002) TCGA-ZJ-AAXT-01 11 9459820 9459820 G A IPO7 Missense_Mutation p.D895N 0.21 deleterious(0.02) benign(0.058) TCGA-ZJ-AAXT-01 12 121867450 121867450 C T KDM2B 3'Flank 0.40 TCGA-ZJ-AAXT-01 12 124330552 124330552 C A DNAH10 Missense_Mutation p.Q1771K 0.27 probably_damaging(0.998) TCGA-ZJ-AAXT-01 12 20905612 20905612 G C SLCO1C1 3'UTR 0.23 TCGA-ZJ-AAXT-01 12 28116375 28116375 G A PTHLH Missense_Mutation p.R144C 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXT-01 12 39047559 39047559 C A CPNE8 3'UTR 0.28 TCGA-ZJ-AAXT-01 12 50500195 50500195 G C GPD1 Missense_Mutation p.C162S 0.32 tolerated(0.44) possibly_damaging(0.678) TCGA-ZJ-AAXT-01 12 51214618 51214618 T A ATF1 3'UTR 0.36 TCGA-ZJ-AAXT-01 12 51214619 51214619 C T ATF1 3'UTR 0.36 TCGA-ZJ-AAXT-01 12 54975847 54975847 C G PPP1R1A Missense_Mutation p.E106Q 0.15 deleterious(0.01) benign(0.027) TCGA-ZJ-AAXT-01 12 56863358 56863358 C G SPRYD4 Silent p.L207L 0.33 TCGA-ZJ-AAXT-01 12 64895477 64895477 C T TBK1 3'UTR 0.26 TCGA-ZJ-AAXT-01 12 64895880 64895880 C G TBK1 3'UTR 0.32 TCGA-ZJ-AAXT-01 12 68707531 68707531 G C MDM1 Nonsense_Mutation p.S501* 0.31 TCGA-ZJ-AAXT-01 12 7867851 7867851 C T DPPA3 Missense_Mutation p.S52F 0.24 tolerated(0.59) benign(0) TCGA-ZJ-AAXT-01 13 103492126 103492126 C T BIVM-ERCC5 Nonsense_Mutation p.Q447* 0.21 TCGA-ZJ-AAXT-01 13 32366994 32366994 G C RXFP2 Missense_Mutation p.E519Q 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-ZJ-AAXT-01 13 48916767 48916767 G A RB1 Nonsense_Mutation p.W99* 0.50 TCGA-ZJ-AAXT-01 13 60485930 60485930 G A DIAPH3 Missense_Mutation p.S769L 0.36 tolerated(0.1) possibly_damaging(0.731) TCGA-ZJ-AAXT-01 14 106780673 106780673 C T IGHV4-28 Missense_Mutation p.G64E 0.24 deleterious(0.03) benign(0.375) TCGA-ZJ-AAXT-01 14 21238537 21238537 C G EDDM3B Missense_Mutation p.I76M 0.19 deleterious(0.04) probably_damaging(0.989) TCGA-ZJ-AAXT-01 14 21238994 21238994 C T EDDM3B 3'UTR 0.32 TCGA-ZJ-AAXT-01 14 21542585 21542585 T A ARHGEF40 Missense_Mutation p.N232K 0.21 deleterious(0.05) probably_damaging(0.968) TCGA-ZJ-AAXT-01 14 23468187 23468187 C T C14orf93 Missense_Mutation p.E16K 0.20 deleterious_low_confidence(0.03) probably_damaging(0.956) TCGA-ZJ-AAXT-01 14 23872647 23872647 C G MYH6 Missense_Mutation p.E270Q 0.22 deleterious(0) possibly_damaging(0.897) TCGA-ZJ-AAXT-01 14 24664112 24664112 G A TM9SF1 Silent p.A38A 0.30 TCGA-ZJ-AAXT-01 14 45645369 45645369 G A FANCM Missense_Mutation p.E1138K 0.26 deleterious(0.03) benign(0.093) TCGA-ZJ-AAXT-01 14 60194040 60194040 C G RTN1 Silent p.L454L 0.27 TCGA-ZJ-AAXT-01 14 71476397 71476397 A T PCNX Silent p.S892S 0.31 TCGA-ZJ-AAXT-01 14 78187086 78187086 G A SNW1 Nonsense_Mutation p.Q406* 0.45 TCGA-ZJ-AAXT-01 14 93533938 93533938 G A ITPK1 Intron 0.32 TCGA-ZJ-AAXT-01 14 95912396 95912396 C T SYNE3 Silent p.E494E 0.21 TCGA-ZJ-AAXT-01 15 102462438 102462438 C G OR4F4 Missense_Mutation p.L275F 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-ZJ-AAXT-01 15 22863040 22863040 G A TUBGCP5 Silent p.L687L 0.33 TCGA-ZJ-AAXT-01 15 40468812 40468812 G A BUB1B Silent p.A173A 0.29 TCGA-ZJ-AAXT-01 15 41555012 41555012 G A CHP1 Missense_Mutation p.E94K 0.29 tolerated(0.58) benign(0.001) TCGA-ZJ-AAXT-01 15 42128705 42128705 G A JMJD7-PLA2G4B Missense_Mutation p.E220K 0.66 tolerated(0.06) benign(0.005) TCGA-ZJ-AAXT-01 15 45007898 45007898 G A B2M Nonsense_Mutation p.W115* 0.56 TCGA-ZJ-AAXT-01 15 66679654 66679654 C G MAP2K1 5'UTR 0.56 TCGA-ZJ-AAXT-01 15 89382193 89382193 C T ACAN Missense_Mutation p.R124C 0.47 deleterious(0.01) unknown(0) TCGA-ZJ-AAXT-01 15 91500425 91500425 C T RCCD1 Silent p.L83L 0.50 TCGA-ZJ-AAXT-01 16 15917203 15917203 C T MYH11 Silent p.K137K 0.31 TCGA-ZJ-AAXT-01 16 15917254 15917254 G C MYH11 Silent p.L120L 0.31 TCGA-ZJ-AAXT-01 16 1831516 1831516 C G SPSB3 Intron 0.22 TCGA-ZJ-AAXT-01 16 21734272 21734272 T A OTOA Missense_Mutation p.M618K 0.20 deleterious(0) benign(0.098) TCGA-ZJ-AAXT-01 16 3078763 3078763 C T CCDC64B Silent p.A392A 0.25 TCGA-ZJ-AAXT-01 16 67694432 67694432 G A ACD 5'UTR 0.29 TCGA-ZJ-AAXT-01 16 72828798 72828798 G C ZFHX3 Missense_Mutation p.Q2595E 0.26 unknown(0) TCGA-ZJ-AAXT-01 16 75272150 75272150 G A BCAR1 Intron 0.28 TCGA-ZJ-AAXT-01 16 76574659 76574659 C G CNTNAP4 Silent p.V1065V 0.32 TCGA-ZJ-AAXT-01 17 13399414 13399414 G A HS3ST3A1 3'UTR 0.10 TCGA-ZJ-AAXT-01 17 17075128 17075128 C T MPRIP Nonsense_Mutation p.R754* 0.27 TCGA-ZJ-AAXT-01 17 40466546 40466546 G C STAT3 3'UTR 0.27 TCGA-ZJ-AAXT-01 17 40474382 40474382 G C STAT3 Silent p.L673L 0.23 TCGA-ZJ-AAXT-01 17 41345136 41345136 G A NBR1 Missense_Mutation p.V367I 0.36 tolerated(0.54) benign(0.015) TCGA-ZJ-AAXT-01 17 42453213 42453213 G C ITGA2B Silent p.V863V 0.26 TCGA-ZJ-AAXT-01 17 55123226 55123226 C G RNF126P1 RNA 0.42 TCGA-ZJ-AAXT-01 17 59876555 59876555 G A BRIP1 Missense_Mutation p.R416W 0.39 tolerated(0.13) benign(0.031) TCGA-ZJ-AAXT-01 17 6531815 6531815 C G KIAA0753 Missense_Mutation p.E114Q 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-ZJ-AAXT-01 17 6719193 6719193 G C TEKT1 Missense_Mutation p.L149V 0.49 deleterious(0.01) probably_damaging(0.956) TCGA-ZJ-AAXT-01 17 73569115 73569115 G A LLGL2 Silent p.V827V 0.30 TCGA-ZJ-AAXT-01 17 73870420 73870420 G A TRIM47 3'UTR 0.35 TCGA-ZJ-AAXT-01 17 73870422 73870422 G T TRIM47 3'UTR 0.33 TCGA-ZJ-AAXT-01 17 73870726 73870726 G T TRIM47 Silent p.I585I 0.25 TCGA-ZJ-AAXT-01 17 7579503 7579503 C A TP53 Nonsense_Mutation p.E62* 0.25 TCGA-ZJ-AAXT-01 17 79207384 79207384 C G ENTHD2 Intron 0.24 TCGA-ZJ-AAXT-01 18 55027629 55027629 G C ST8SIA3 3'UTR 0.19 TCGA-ZJ-AAXT-01 18 72345463 72345463 G A ZNF407 Missense_Mutation p.D830N 0.41 deleterious(0) possibly_damaging(0.642) TCGA-ZJ-AAXT-01 19 11354029 11354029 G A DOCK6 Missense_Mutation p.R431W 0.25 deleterious(0) possibly_damaging(0.453) TCGA-ZJ-AAXT-01 19 1234635 1234635 C T C19orf26 Missense_Mutation p.E188K 0.32 deleterious(0) probably_damaging(0.961) TCGA-ZJ-AAXT-01 19 12954346 12954346 G A MAST1 Silent p.A84A 0.27 TCGA-ZJ-AAXT-01 19 13888913 13888913 G A C19orf53 Missense_Mutation p.M67I 0.18 tolerated(0.11) benign(0.22) TCGA-ZJ-AAXT-01 19 17005193 17005193 A C CPAMD8 Intron 0.22 TCGA-ZJ-AAXT-01 19 17005213 17005213 C T CPAMD8 Intron 0.18 TCGA-ZJ-AAXT-01 19 17342877 17342877 C T NR2F6 3'UTR 0.18 TCGA-ZJ-AAXT-01 19 19038943 19038943 G C DDX49 Missense_Mutation p.D424H 0.25 deleterious(0.03) probably_damaging(0.954) TCGA-ZJ-AAXT-01 19 21688463 21688463 G A ZNF429 5'UTR 0.32 TCGA-ZJ-AAXT-01 19 31767335 31767335 G A TSHZ3 3'UTR 0.20 TCGA-ZJ-AAXT-01 19 35624594 35624594 C T LGI4 Intron 0.21 TCGA-ZJ-AAXT-01 19 38896208 38896208 G A FAM98C Missense_Mutation p.R228H 0.11 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXT-01 19 39788862 39788862 C T IFNL1 Nonsense_Mutation p.Q135* 0.20 TCGA-ZJ-AAXT-01 19 39873898 39873898 C A SAMD4B Missense_Mutation p.L675M 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXT-01 19 39897553 39897553 G C ZFP36 Silent p.L9L 0.23 TCGA-ZJ-AAXT-01 19 40006207 40006207 C T SELV Missense_Mutation p.P119S 0.16 tolerated(0.2) possibly_damaging(0.641) TCGA-ZJ-AAXT-01 19 40579901 40579901 C G ZNF780A 3'UTR 0.17 TCGA-ZJ-AAXT-01 19 416978 416978 C T SHC2 3'UTR 0.26 TCGA-ZJ-AAXT-01 19 41813482 41813482 G A HNRNPUL1 3'Flank 0.04 TCGA-ZJ-AAXT-01 19 42728661 42728661 G C ZNF526 Missense_Mutation p.E36Q 0.19 tolerated_low_confidence(0.07) benign(0.092) TCGA-ZJ-AAXT-01 19 42729186 42729186 G C ZNF526 Missense_Mutation p.E211Q 0.22 deleterious(0.03) probably_damaging(0.994) TCGA-ZJ-AAXT-01 19 42729279 42729279 G A ZNF526 Missense_Mutation p.E242K 0.14 tolerated(0.33) benign(0.036) TCGA-ZJ-AAXT-01 19 42752913 42752913 C G ERF Missense_Mutation p.G451R 0.38 tolerated_low_confidence(0.09) benign(0.058) TCGA-ZJ-AAXT-01 19 45213844 45213844 G A CEACAM16 3'UTR 0.20 TCGA-ZJ-AAXT-01 19 45988900 45988900 G C RTN2 3'UTR 0.17 TCGA-ZJ-AAXT-01 19 49142684 49142684 C T CA11 Missense_Mutation p.E225K 0.21 tolerated(0.24) benign(0.443) TCGA-ZJ-AAXT-01 19 50155928 50155928 C G SCAF1 Missense_Mutation p.S761C 0.23 unknown(0) TCGA-ZJ-AAXT-01 19 51506325 51506325 G A KLK9 3'UTR 0.23 TCGA-ZJ-AAXT-01 19 51520401 51520401 C T KLK10 Silent p.Q78Q 0.21 TCGA-ZJ-AAXT-01 19 51520541 51520541 C T KLK10 Missense_Mutation p.E32K 0.16 tolerated(0.08) benign(0.002) TCGA-ZJ-AAXT-01 19 53886163 53886163 G C ZNF525 3'UTR 0.15 TCGA-ZJ-AAXT-01 19 54297264 54297264 C T NLRP12 3'UTR 0.23 TCGA-ZJ-AAXT-01 19 55687080 55687080 G A SYT5 Silent p.F179F 0.21 TCGA-ZJ-AAXT-01 19 5654185 5654185 C G SAFB Nonsense_Mutation p.S547* 0.33 TCGA-ZJ-AAXT-01 19 56888716 56888716 A G AC006116.24 5'Flank 0.20 TCGA-ZJ-AAXT-01 19 57036363 57036363 G C ZNF471 Missense_Mutation p.Q309H 0.12 deleterious(0.01) benign(0.002) TCGA-ZJ-AAXT-01 19 57802230 57802230 G C ZNF460 Missense_Mutation p.L107F 0.10 tolerated(0.09) benign(0.005) TCGA-ZJ-AAXT-01 19 58059204 58059204 C G ZNF550 Missense_Mutation p.Q95H 0.22 tolerated(0.07) benign(0.371) TCGA-ZJ-AAXT-01 19 6452482 6452482 C G SLC25A23 Missense_Mutation p.K304N 0.31 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXT-01 19 6981152 6981152 C G EMR4P RNA 0.18 TCGA-ZJ-AAXT-01 19 7585217 7585217 C G ZNF358 Silent p.L363L 0.21 TCGA-ZJ-AAXT-01 1 109235359 109235359 T C PRPF38B Missense_Mutation p.L49P 0.32 deleterious(0) probably_damaging(0.991) TCGA-ZJ-AAXT-01 1 112997122 112997122 G A CTTNBP2NL Missense_Mutation p.E128K 0.35 tolerated(0.06) possibly_damaging(0.876) TCGA-ZJ-AAXT-01 1 112997151 112997151 G C CTTNBP2NL Missense_Mutation p.E137D 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-ZJ-AAXT-01 1 155408254 155408254 C T ASH1L Missense_Mutation p.E1898K 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ZJ-AAXT-01 1 156646982 156646982 C T NES Silent p.R25R 0.09 TCGA-ZJ-AAXT-01 1 183854035 183854035 G A RGL1 Missense_Mutation p.R340K 0.21 deleterious(0) probably_damaging(0.984) TCGA-ZJ-AAXT-01 1 216390797 216390797 G C USH2A Nonsense_Mutation p.S1030* 0.29 TCGA-ZJ-AAXT-01 1 237947682 237947682 G C RYR2 Missense_Mutation p.E4224Q 0.34 benign(0.016) TCGA-ZJ-AAXT-01 1 241938487 241938487 G A WDR64 Silent p.T827T 0.19 TCGA-ZJ-AAXT-01 1 27677817 27677817 C G SYTL1 Silent p.A411A 0.28 TCGA-ZJ-AAXT-01 1 33402838 33402838 G A RNF19B Nonsense_Mutation p.Q590* 0.33 TCGA-ZJ-AAXT-01 1 38453482 38453482 C G SF3A3 Silent p.L57L 0.24 TCGA-ZJ-AAXT-01 1 38455222 38455222 C T SF3A3 Missense_Mutation p.D48N 0.39 deleterious(0.03) possibly_damaging(0.529) TCGA-ZJ-AAXT-01 1 45671471 45671471 G A ZSWIM5 Silent p.I184I 0.33 TCGA-ZJ-AAXT-01 1 6278368 6278368 G T RNF207 Nonsense_Mutation p.E558* 0.23 TCGA-ZJ-AAXT-01 1 84876595 84876595 G A DNASE2B Missense_Mutation p.E154K 0.33 tolerated(0.23) benign(0.05) TCGA-ZJ-AAXT-01 1 89448794 89448794 C T RBMXL1 Missense_Mutation p.R239Q 0.27 deleterious(0.02) benign(0.187) TCGA-ZJ-AAXT-01 20 11903436 11903436 C T BTBD3 Nonsense_Mutation p.Q231* 0.23 TCGA-ZJ-AAXT-01 20 13846070 13846070 G C SEL1L2 Intron 0.22 TCGA-ZJ-AAXT-01 20 19998085 19998085 C T NAA20 Silent p.F15F 0.28 TCGA-ZJ-AAXT-01 20 25667040 25667040 C T ZNF337 Missense_Mutation p.G5E 0.32 tolerated(1) probably_damaging(0.931) TCGA-ZJ-AAXT-01 20 33097678 33097678 G A ITCH 3'Flank 0.26 TCGA-ZJ-AAXT-01 20 34618541 34618541 C T CNBD2 Missense_Mutation p.R564W 0.37 deleterious(0) probably_damaging(0.997) TCGA-ZJ-AAXT-01 20 54945304 54945304 G A AURKA Silent p.L374L 0.38 TCGA-ZJ-AAXT-01 20 54945349 54945349 G A AURKA Silent p.L359L 0.39 TCGA-ZJ-AAXT-01 20 642525 642525 T A SCRT2 3'UTR 0.41 TCGA-ZJ-AAXT-01 21 35743002 35743002 G C KCNE2 Missense_Mutation p.K75N 0.14 deleterious(0) possibly_damaging(0.857) TCGA-ZJ-AAXT-01 21 37661367 37661367 G T DOPEY2 Silent p.T2126T 0.30 TCGA-ZJ-AAXT-01 21 43783485 43783485 C G TFF1 Missense_Mutation p.Q39H 0.35 tolerated(0.12) possibly_damaging(0.722) TCGA-ZJ-AAXT-01 21 45676037 45676037 C G DNMT3L Missense_Mutation p.E173Q 0.36 tolerated(0.15) benign(0.008) TCGA-ZJ-AAXT-01 22 17308741 17308741 G A HSFY1P1 RNA 0.35 TCGA-ZJ-AAXT-01 22 18609216 18609216 C T TUBA8 Silent p.L157L 0.23 TCGA-ZJ-AAXT-01 22 22318613 22318613 C T TOP3B Missense_Mutation p.E340K 0.40 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXT-01 22 28196155 28196155 G T MN1 Nonsense_Mutation p.S126* 0.58 TCGA-ZJ-AAXT-01 22 42466293 42466293 C T NAGA Silent p.L3L 0.28 TCGA-ZJ-AAXT-01 22 42780553 42780553 C A NFAM1 3'UTR 0.40 TCGA-ZJ-AAXT-01 2 129025573 129025573 G A HS6ST1 3'UTR 0.24 TCGA-ZJ-AAXT-01 2 131128305 131128305 G C PTPN18 Missense_Mutation p.D262H 0.10 deleterious(0.03) benign(0.025) TCGA-ZJ-AAXT-01 2 141625217 141625217 C G LRP1B Missense_Mutation p.Q1507H 0.36 benign(0.02) TCGA-ZJ-AAXT-01 2 141625282 141625282 C G LRP1B Missense_Mutation p.D1486H 0.34 benign(0.058) TCGA-ZJ-AAXT-01 2 161030583 161030583 C T ITGB6 Missense_Mutation p.E221K 0.10 tolerated(0.26) benign(0.403) TCGA-ZJ-AAXT-01 2 187466860 187466860 A G ITGAV Missense_Mutation p.I100V 0.24 tolerated(0.12) benign(0.001) TCGA-ZJ-AAXT-01 2 216967196 216967196 G A TMEM169 3'UTR 0.22 TCGA-ZJ-AAXT-01 2 219140287 219140287 C G TMBIM1 Missense_Mutation p.E283Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXT-01 2 225346758 225346758 A C CUL3 Missense_Mutation p.L627R 0.30 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXT-01 2 242109265 242109265 G A PPP1R7 Missense_Mutation p.E297K 0.05 tolerated(0.36) benign(0.211) TCGA-ZJ-AAXT-01 2 27460703 27460703 G C CAD Missense_Mutation p.E1561Q 0.39 tolerated(0.23) benign(0.056) TCGA-ZJ-AAXT-01 2 27804284 27804284 C T C2orf16 Silent p.C1615C 0.21 TCGA-ZJ-AAXT-01 2 42558021 42558021 C G EML4 3'UTR 0.28 TCGA-ZJ-AAXT-01 2 44527193 44527193 G C SLC3A1 Silent p.L325L 0.32 TCGA-ZJ-AAXT-01 2 50148948 50148948 A T NRXN1 3'UTR 0.33 TCGA-ZJ-AAXT-01 2 56420143 56420143 C T CCDC85A Missense_Mutation p.R270C 0.29 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-ZJ-AAXT-01 2 75196697 75196697 C T POLE4 3'UTR 0.21 TCGA-ZJ-AAXT-01 2 84851667 84851667 A C DNAH6 Silent p.R1426R 0.29 TCGA-ZJ-AAXT-01 2 84851668 84851668 G T DNAH6 Missense_Mutation p.R1426I 0.28 deleterious(0) benign(0.341) TCGA-ZJ-AAXT-01 2 95847269 95847269 C A ZNF2 Nonsense_Mutation p.C232* 0.22 TCGA-ZJ-AAXT-01 2 97357297 97357297 C T FER1L5 RNA 0.17 TCGA-ZJ-AAXT-01 3 124696785 124696785 G A HEG1 Nonsense_Mutation p.Q1247* 0.35 TCGA-ZJ-AAXT-01 3 128996362 128996362 C G COPG1 3'UTR 0.27 TCGA-ZJ-AAXT-01 3 129152042 129152042 G A MBD4 Missense_Mutation p.S487L 0.30 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXT-01 3 130721849 130721849 C G ATP2C1 Intron 0.32 TCGA-ZJ-AAXT-01 3 140251205 140251205 G T CLSTN2 Nonsense_Mutation p.E462* 0.29 TCGA-ZJ-AAXT-01 3 142142460 142142460 C T XRN1 Missense_Mutation p.E218K 0.25 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXT-01 3 145912133 145912133 T G PLSCR4 3'UTR 0.33 TCGA-ZJ-AAXT-01 3 149678966 149678966 C G RNF13 3'UTR 0.36 TCGA-ZJ-AAXT-01 3 173996872 173996872 G C NLGN1 Missense_Mutation p.D361H 0.26 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXT-01 3 185198055 185198055 C T MAP3K13 Missense_Mutation p.S846L 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ZJ-AAXT-01 3 186937548 186937548 C T MASP1 3'UTR 0.21 TCGA-ZJ-AAXT-01 3 52440896 52440896 G C BAP1 Missense_Mutation p.T203R 0.48 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXT-01 3 57139917 57139917 C T IL17RD Missense_Mutation p.E239K 0.33 tolerated(0.14) possibly_damaging(0.522) TCGA-ZJ-AAXT-01 3 64601734 64601734 C T ADAMTS9 Missense_Mutation p.D976N 0.12 deleterious(0.05) benign(0.025) TCGA-ZJ-AAXT-01 4 10444914 10444914 G C ZNF518B Silent p.L1013L 0.30 TCGA-ZJ-AAXT-01 4 122782775 122782775 G A BBS7 Silent p.I75I 0.35 TCGA-ZJ-AAXT-01 4 124529 124529 C G ZNF718 RNA 0.43 TCGA-ZJ-AAXT-01 4 22422672 22422672 G C GPR125 Missense_Mutation p.S549C 0.36 deleterious(0.02) benign(0.235) TCGA-ZJ-AAXT-01 4 23816021 23816021 G C PPARGC1A Nonsense_Mutation p.S362* 0.37 TCGA-ZJ-AAXT-01 4 54231741 54231741 G A SCFD2 Missense_Mutation p.A123V 0.09 tolerated(0.07) benign(0.011) TCGA-ZJ-AAXT-01 4 679947 679947 G C MFSD7 Missense_Mutation p.P147A 0.40 deleterious(0) possibly_damaging(0.86) TCGA-ZJ-AAXT-01 4 87610181 87610181 C G PTPN13 Silent p.L128L 0.35 TCGA-ZJ-AAXT-01 5 127594063 127594064 - A FBN2 3'UTR 0.14 TCGA-ZJ-AAXT-01 5 130771565 130771565 G C RAPGEF6 Intron 0.18 TCGA-ZJ-AAXT-01 5 140741266 140741266 C G PCDHGB2 Missense_Mutation p.H522D 0.31 deleterious(0) probably_damaging(0.99) TCGA-ZJ-AAXT-01 5 140800983 140800983 C T PCDHGA11 Silent p.R63R 0.25 TCGA-ZJ-AAXT-01 5 140903791 140903791 C T DIAPH1 Missense_Mutation p.D1194N 0.18 possibly_damaging(0.838) TCGA-ZJ-AAXT-01 5 141053176 141053176 G A ARAP3 Nonsense_Mutation p.Q300* 0.35 TCGA-ZJ-AAXT-01 5 149755822 149755822 G A TCOF1 Missense_Mutation p.E691K 0.45 tolerated(0.1) possibly_damaging(0.867) TCGA-ZJ-AAXT-01 5 24511624 24511624 C T CDH10 Splice_Site p.X272_splice 0.43 TCGA-ZJ-AAXT-01 5 93979061 93979061 G C ANKRD32 Missense_Mutation p.R172T 0.26 tolerated(0.74) benign(0.064) TCGA-ZJ-AAXT-01 5 94860174 94860174 G A TTC37 Silent p.L483L 0.21 TCGA-ZJ-AAXT-01 6 117010561 117010561 G A KPNA5 Missense_Mutation p.R28H 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXT-01 6 123709694 123709694 C T TRDN Missense_Mutation p.A370T 0.44 tolerated_low_confidence(0.17) benign(0.048) TCGA-ZJ-AAXT-01 6 137519683 137519683 C A IFNGR1 Nonsense_Mutation p.E319* 0.38 TCGA-ZJ-AAXT-01 6 137815416 137815416 G A OLIG3 5'UTR 0.46 TCGA-ZJ-AAXT-01 6 146276009 146276009 C G SHPRH Silent p.L150L 0.42 TCGA-ZJ-AAXT-01 6 149721821 149721821 G A SUMO4 3'UTR 0.46 TCGA-ZJ-AAXT-01 6 152652819 152652819 C T SYNE1 Missense_Mutation p.R4334K 0.47 benign(0.004) TCGA-ZJ-AAXT-01 6 31765321 31765321 G C LSM2 3'UTR 0.28 TCGA-ZJ-AAXT-01 6 39855313 39855313 G A DAAM2 Missense_Mutation p.E669K 0.65 deleterious(0.01) probably_damaging(0.97) TCGA-ZJ-AAXT-01 7 102389525 102389525 C G FAM185A 5'Flank 0.22 TCGA-ZJ-AAXT-01 7 123092865 123092865 C G IQUB Missense_Mutation p.E770Q 0.28 tolerated_low_confidence(0.08) benign(0.383) TCGA-ZJ-AAXT-01 7 141843583 141843583 G A RP11-1220K2.2 Silent p.P444P 0.35 TCGA-ZJ-AAXT-01 7 142498838 142498838 G A TRBC2 Missense_Mutation p.D39N 0.19 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXT-01 7 149129019 149129019 C T ZNF777 Missense_Mutation p.E782K 0.24 tolerated(0.12) possibly_damaging(0.849) TCGA-ZJ-AAXT-01 7 20784900 20784900 C G ABCB5 Missense_Mutation p.R1090G 0.21 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXT-01 7 36423532 36423532 C G KIAA0895 Missense_Mutation p.E38D 0.32 deleterious_low_confidence(0.02) benign(0.001) TCGA-ZJ-AAXT-01 7 38502670 38502670 C T AMPH Missense_Mutation p.E265K 0.24 tolerated(0.15) possibly_damaging(0.818) TCGA-ZJ-AAXT-01 7 47454705 47454705 G A TNS3 Silent p.F191F 0.12 TCGA-ZJ-AAXT-01 7 47915716 47915716 C T PKD1L1 Missense_Mutation p.E1255K 0.36 deleterious(0.01) possibly_damaging(0.696) TCGA-ZJ-AAXT-01 7 86988851 86988851 A G CROT Intron 0.25 TCGA-ZJ-AAXT-01 8 100548883 100548883 G A VPS13B Intron 0.54 TCGA-ZJ-AAXT-01 8 103244511 103244511 C T RRM2B Missense_Mutation p.E24K 0.48 tolerated_low_confidence(0.36) benign(0.001) TCGA-ZJ-AAXT-01 8 116422069 116422069 C T TRPS1 3'UTR 0.29 TCGA-ZJ-AAXT-01 8 39502969 39502969 C T ADAM18 Missense_Mutation p.T341I 0.22 tolerated(0.14) benign(0.156) TCGA-ZJ-AAXT-01 8 77766990 77766990 G A ZFHX4 Silent p.T2611T 0.41 TCGA-ZJ-AAXT-01 9 104130513 104130513 G A BAAT Silent p.F186F 0.29 TCGA-ZJ-AAXT-01 9 108145487 108145487 G C SLC44A1 Silent p.L572L 0.15 TCGA-ZJ-AAXT-01 9 111781908 111781908 A C TMEM245 3'UTR 0.47 TCGA-ZJ-AAXT-01 9 113066750 113066750 G A TXNDC8 Silent p.N106N 0.26 TCGA-ZJ-AAXT-01 9 129596405 129596405 G A ZBTB43 3'UTR 0.27 TCGA-ZJ-AAXT-01 9 130270435 130270435 C A FAM129B Silent p.R493R 0.32 TCGA-ZJ-AAXT-01 9 132400120 132400120 C T ASB6 Silent p.L405L 0.21 TCGA-ZJ-AAXT-01 9 135771606 135771606 G A TSC1 3'UTR 0.39 TCGA-ZJ-AAXT-01 9 32784371 32784371 G A TMEM215 Missense_Mutation p.E64K 0.18 deleterious(0.01) benign(0.011) TCGA-ZJ-AAXT-01 9 32785561 32785561 G C TMEM215 3'UTR 0.43 TCGA-ZJ-AAXT-01 9 32786769 32786769 G A TMEM215 3'UTR 0.34 TCGA-ZJ-AAXT-01 9 32787052 32787052 G C TMEM215 3'UTR 0.27 TCGA-ZJ-AAXT-01 9 34458918 34458918 C A DNAI1 5'UTR 0.31 TCGA-ZJ-AAXT-01 9 73152239 73152239 G A TRPM3 Missense_Mutation p.R1252W 0.38 deleterious(0) probably_damaging(0.986) TCGA-ZJ-AAXT-01 9 75406801 75406801 G C TMC1 Splice_Site p.X409_splice 0.31 TCGA-ZJ-AAXT-01 9 84607367 84607367 G C SPATA31D1 Missense_Mutation p.R661T 0.30 deleterious(0.05) benign(0.031) TCGA-ZJ-AAXT-01 9 84607440 84607440 G C SPATA31D1 Missense_Mutation p.K685N 0.39 deleterious(0.01) probably_damaging(0.962) TCGA-ZJ-AAXT-01 X 101969707 101969707 G C GPRASP2 5'UTR 0.33 TCGA-ZJ-AAXT-01 X 101970843 101970843 G A GPRASP2 Missense_Mutation p.R349K 0.35 tolerated(0.44) benign(0.03) TCGA-ZJ-AAXT-01 X 106117424 106117424 C A TBC1D8B 3'UTR 0.23 TCGA-ZJ-AAXT-01 X 117575374 117575374 G A WDR44 Missense_Mutation p.R673H 0.27 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXT-01 X 118227693 118227693 C T KIAA1210 Missense_Mutation p.E474K 0.22 deleterious(0.03) benign(0.393) TCGA-ZJ-AAXT-01 X 118377278 118377278 C T PGRMC1 3'UTR 0.29 TCGA-ZJ-AAXT-01 X 119394061 119394061 G T TMEM255A 3'UTR 0.41 TCGA-ZJ-AAXT-01 X 129149410 129149410 C T BCORL1 Nonsense_Mutation p.Q888* 0.50 TCGA-ZJ-AAXT-01 X 14039608 14039608 G A GEMIN8 5'UTR 0.06 TCGA-ZJ-AAXT-01 X 1499970 1499970 C T IL3RA Silent p.I345I 0.28 TCGA-ZJ-AAXT-01 X 149997849 149997849 G A CD99L2 Intron 0.37 TCGA-ZJ-AAXT-01 X 1501466 1501466 C T IL3RA 3'UTR 0.26 TCGA-ZJ-AAXT-01 X 1505433 1505433 G A SLC25A6 3'UTR 0.25 TCGA-ZJ-AAXT-01 X 151560750 151560750 G A GABRA3 Intron 0.36 TCGA-ZJ-AAXT-01 X 17752606 17752606 G C NHS 3'UTR 0.07 TCGA-ZJ-AAXT-01 X 29301057 29301057 G A IL1RAPL1 Missense_Mutation p.D29N 0.27 deleterious(0.01) possibly_damaging(0.454) TCGA-ZJ-AAXT-01 X 32404434 32404434 C G DMD Missense_Mutation p.G1556A 0.08 probably_damaging(0.978) TCGA-ZJ-AAXT-01 X 37587448 37587448 C G XK Silent p.L356L 0.27 TCGA-ZJ-AAXT-01 X 49089787 49089787 G A CACNA1F 5'UTR 0.27 TCGA-ZJ-AAXT-01 X 54014358 54014358 A C PHF8 Missense_Mutation p.L620V 0.14 tolerated(0.28) benign(0.01) TCGA-ZJ-AAXT-01 X 84310876 84310876 G A APOOL Silent p.P113P 0.26 TCGA-ZJ-AAXU-01 10 102107913 102107913 C G SCD Silent p.L40L 0.24 TCGA-ZJ-AAXU-01 10 103586034 103586034 G A KCNIP2 3'Flank 0.20 TCGA-ZJ-AAXU-01 10 104497600 104497600 C T SFXN2 3'UTR 0.29 TCGA-ZJ-AAXU-01 10 120896981 120896981 C - SFXN4 3'Flank 0.15 TCGA-ZJ-AAXU-01 10 121336996 121336996 C G TIAL1 Missense_Mutation p.R252T 0.18 deleterious(0) possibly_damaging(0.745) TCGA-ZJ-AAXU-01 10 121680453 121680453 G C SEC23IP Missense_Mutation p.R693T 0.33 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 10 123244956 123244956 C T FGFR2 Silent p.L717L 0.32 TCGA-ZJ-AAXU-01 10 134705855 134705855 C T TTC40 Missense_Mutation p.E1096K 0.21 tolerated(0.22) benign(0.187) TCGA-ZJ-AAXU-01 10 135111525 135111525 C G TUBGCP2 Missense_Mutation p.E183Q 0.30 tolerated(0.12) benign(0.109) TCGA-ZJ-AAXU-01 10 13652177 13652177 G C PRPF18 Missense_Mutation p.E168Q 0.14 deleterious(0.05) possibly_damaging(0.663) TCGA-ZJ-AAXU-01 10 15262972 15262972 C T FAM171A1 Nonsense_Mutation p.W281* 0.32 TCGA-ZJ-AAXU-01 10 24835504 24835504 G C KIAA1217 3'UTR 0.17 TCGA-ZJ-AAXU-01 10 32097997 32097997 G C ARHGAP12 Missense_Mutation p.L730V 0.17 deleterious(0) probably_damaging(0.986) TCGA-ZJ-AAXU-01 10 33197411 33197411 C G ITGB1 Missense_Mutation p.G739A 0.22 tolerated(0.06) probably_damaging(0.977) TCGA-ZJ-AAXU-01 10 33200440 33200440 G C ITGB1 Missense_Mutation p.P623A 0.22 tolerated(0.28) benign(0.007) TCGA-ZJ-AAXU-01 10 34400415 34400415 C G PARD3 Missense_Mutation p.Q1251H 0.29 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-ZJ-AAXU-01 10 37508160 37508160 G A ANKRD30A Missense_Mutation p.E1118K 0.41 deleterious(0) possibly_damaging(0.636) TCGA-ZJ-AAXU-01 10 72026002 72026002 C T NPFFR1 Silent p.A51A 0.24 TCGA-ZJ-AAXU-01 10 73556830 73556830 C G CDH23 Intron 0.17 TCGA-ZJ-AAXU-01 10 75548562 75548562 G A ZSWIM8 Missense_Mutation p.E115K 0.28 deleterious(0.01) probably_damaging(0.979) TCGA-ZJ-AAXU-01 10 75549528 75549528 G C ZSWIM8 Missense_Mutation p.Q228H 0.25 tolerated(0.66) probably_damaging(0.989) TCGA-ZJ-AAXU-01 10 75549980 75549980 G A ZSWIM8 Missense_Mutation p.E291K 0.27 deleterious(0) probably_damaging(0.979) TCGA-ZJ-AAXU-01 10 75550808 75550808 G A ZSWIM8 Silent p.L339L 0.29 TCGA-ZJ-AAXU-01 10 75550818 75550818 G A ZSWIM8 Missense_Mutation p.E343K 0.29 deleterious(0) probably_damaging(0.979) TCGA-ZJ-AAXU-01 10 75550824 75550824 G A ZSWIM8 Missense_Mutation p.E345K 0.30 deleterious(0) probably_damaging(0.979) TCGA-ZJ-AAXU-01 10 75553949 75553949 G A ZSWIM8 Silent p.K890K 0.23 TCGA-ZJ-AAXU-01 10 75673478 75673478 C T PLAU Silent p.I214I 0.25 TCGA-ZJ-AAXU-01 10 8105955 8105955 G A GATA3 Splice_Site p.X260_splice 0.26 TCGA-ZJ-AAXU-01 10 93740215 93740215 C T BTAF1 Missense_Mutation p.S552F 0.21 tolerated(0.2) benign(0.009) TCGA-ZJ-AAXU-01 10 97817702 97817702 C T CCNJ Nonsense_Mutation p.Q286* 0.17 TCGA-ZJ-AAXU-01 11 100784230 100784230 C G ARHGAP42 Missense_Mutation p.I144M 0.45 tolerated(0.21) benign(0.193) TCGA-ZJ-AAXU-01 11 111430907 111430907 C G LAYN Silent p.V291V 0.57 TCGA-ZJ-AAXU-01 11 122928989 122928989 C T HSPA8 Missense_Mutation p.E576K 0.33 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-ZJ-AAXU-01 11 124829083 124829083 C T CCDC15 Nonsense_Mutation p.Q84* 0.17 TCGA-ZJ-AAXU-01 11 125359506 125359506 G A FEZ1 Silent p.F56F 0.41 TCGA-ZJ-AAXU-01 11 134063928 134063928 G A NCAPD3 Missense_Mutation p.L603F 0.21 deleterious(0) probably_damaging(0.953) TCGA-ZJ-AAXU-01 11 16824525 16824525 C T PLEKHA7 Silent p.E717E 0.44 TCGA-ZJ-AAXU-01 11 18630529 18630529 G A SPTY2D1 3'UTR 0.35 TCGA-ZJ-AAXU-01 11 27389337 27389337 G A LGR4 3'UTR 0.40 TCGA-ZJ-AAXU-01 11 33680372 33680372 G A KIAA1549L Missense_Mutation p.A1682T 0.30 tolerated(0.17) benign(0.006) TCGA-ZJ-AAXU-01 11 36615242 36615242 G C RAG2 Silent p.R159R 0.36 TCGA-ZJ-AAXU-01 11 4703374 4703374 C T OR51E2 Missense_Mutation p.D190N 0.30 tolerated(0.08) benign(0.009) TCGA-ZJ-AAXU-01 11 5068546 5068546 G A OR52J3 Missense_Mutation p.R264Q 0.14 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 11 51412059 51412059 G A OR4A5 Silent p.L113L 0.10 TCGA-ZJ-AAXU-01 11 5221453 5221453 T G OR51V1 Silent p.R160R 0.23 TCGA-ZJ-AAXU-01 11 55065433 55065433 C A TRIM51HP RNA 0.12 TCGA-ZJ-AAXU-01 11 55873327 55873327 G A OR8H2 Missense_Mutation p.R270K 0.36 tolerated(1) benign(0.004) TCGA-ZJ-AAXU-01 11 56000464 56000464 G C OR5T2 Missense_Mutation p.F66L 0.20 tolerated(1) benign(0.001) TCGA-ZJ-AAXU-01 11 57003922 57003922 G A APLNR Missense_Mutation p.S186F 0.32 deleterious(0) probably_damaging(0.995) TCGA-ZJ-AAXU-01 11 58377347 58377347 C T ZFP91 Nonsense_Mutation p.Q139* 0.28 TCGA-ZJ-AAXU-01 11 5862975 5862975 G C OR52E6 Missense_Mutation p.I51M 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXU-01 11 61524676 61524676 C T MYRF Intron 0.22 TCGA-ZJ-AAXU-01 11 62563597 62563597 C T NXF1 Missense_Mutation p.E468K 0.11 tolerated(0.15) benign(0.293) TCGA-ZJ-AAXU-01 11 64005992 64005992 G C VEGFB 3'UTR 0.27 TCGA-ZJ-AAXU-01 11 64024230 64024230 C G PLCB3 Missense_Mutation p.L336V 0.19 deleterious(0) probably_damaging(0.997) TCGA-ZJ-AAXU-01 11 64088481 64088481 G A PRDX5 Silent p.E160E 0.32 TCGA-ZJ-AAXU-01 11 6637565 6637565 G A TPP1 Silent p.L352L 0.21 TCGA-ZJ-AAXU-01 11 66481842 66481842 C T SPTBN2 Missense_Mutation p.E174K 0.32 deleterious(0) probably_damaging(0.923) TCGA-ZJ-AAXU-01 11 67656222 67656222 C T RP11-119D9.1 RNA 0.46 TCGA-ZJ-AAXU-01 11 70332218 70332218 G A SHANK2 Missense_Mutation p.P1395S 0.40 deleterious(0) possibly_damaging(0.641) TCGA-ZJ-AAXU-01 11 74985171 74985171 G A ARRB1 Silent p.L287L 0.30 TCGA-ZJ-AAXU-01 11 75160148 75160148 G C GDPD5 Silent p.L196L 0.31 TCGA-ZJ-AAXU-01 11 7846857 7846857 G A OR5P3 Silent p.I221I 0.16 TCGA-ZJ-AAXU-01 11 8719115 8719115 C T ST5 Silent p.K1003K 0.24 TCGA-ZJ-AAXU-01 11 8719184 8719184 C T ST5 Splice_Site p.X981_splice 0.14 TCGA-ZJ-AAXU-01 11 89443589 89443589 C G TRIM77 Silent p.L41L 0.24 TCGA-ZJ-AAXU-01 12 103670983 103670983 G A C12orf42 Missense_Mutation p.H89Y 0.21 tolerated_low_confidence(0.91) unknown(0) TCGA-ZJ-AAXU-01 12 10560246 10560246 C T KLRC4 3'UTR 0.65 TCGA-ZJ-AAXU-01 12 110960200 110960200 C T RAD9B Missense_Mutation p.S370F 0.12 deleterious(0.01) possibly_damaging(0.859) TCGA-ZJ-AAXU-01 12 112429592 112429592 G A TMEM116 Silent p.I60I 0.20 TCGA-ZJ-AAXU-01 12 113402201 113402201 C T OAS3 Silent p.I797I 0.24 TCGA-ZJ-AAXU-01 12 122499822 122499822 C T BCL7A 3'UTR 0.39 TCGA-ZJ-AAXU-01 12 122990228 122990228 G A RSRC2 Missense_Mutation p.S384L 0.29 tolerated(0.16) unknown(0) TCGA-ZJ-AAXU-01 12 123200084 123200084 G A HCAR3 3'UTR 0.18 TCGA-ZJ-AAXU-01 12 124116905 124116905 C G EIF2B1 Missense_Mutation p.L34F 0.29 deleterious(0.01) benign(0.252) TCGA-ZJ-AAXU-01 12 130926637 130926637 C T RIMBP2 Silent p.T403T 0.21 TCGA-ZJ-AAXU-01 12 131488730 131488730 G C GPR133 Splice_Site p.X382_splice 0.25 TCGA-ZJ-AAXU-01 12 13717499 13717499 C A GRIN2B Missense_Mutation p.M891I 0.38 tolerated(0.12) probably_damaging(0.983) TCGA-ZJ-AAXU-01 12 1994180 1994180 C T CACNA2D4 Silent p.L377L 0.08 TCGA-ZJ-AAXU-01 12 32903010 32903010 C T YARS2 Missense_Mutation p.D379N 0.30 deleterious(0.04) benign(0.058) TCGA-ZJ-AAXU-01 12 45803264 45803264 G C ANO6 Missense_Mutation p.E690Q 0.13 deleterious(0) probably_damaging(0.96) TCGA-ZJ-AAXU-01 12 49416552 49416552 G A KMT2D Nonsense_Mutation p.Q5387* 0.17 TCGA-ZJ-AAXU-01 12 49440507 49440507 G A KMT2D Nonsense_Mutation p.Q1435* 0.44 TCGA-ZJ-AAXU-01 12 51874041 51874041 G C SLC4A8 Intron 0.19 TCGA-ZJ-AAXU-01 12 52825362 52825362 C T KRT75 Missense_Mutation p.E279K 0.29 tolerated(0.07) benign(0.022) TCGA-ZJ-AAXU-01 12 53680523 53680523 C T ESPL1 Nonsense_Mutation p.Q1335* 0.12 TCGA-ZJ-AAXU-01 12 56295913 56295913 C G WIBG Missense_Mutation p.E120Q 0.14 tolerated(0.36) benign(0.023) TCGA-ZJ-AAXU-01 12 57961311 57961311 C G KIF5A Missense_Mutation p.I208M 0.22 deleterious(0) probably_damaging(0.981) TCGA-ZJ-AAXU-01 12 5916535 5916535 C G ANO2 Splice_Site p.X294_splice 0.06 TCGA-ZJ-AAXU-01 12 62943447 62943447 G C MON2 Splice_Site p.X918_splice 0.23 TCGA-ZJ-AAXU-01 12 64436664 64436664 G A SRGAP1 Missense_Mutation p.R195K 0.26 tolerated(0.53) benign(0.006) TCGA-ZJ-AAXU-01 12 66773155 66773155 C T GRIP1 Silent p.Q790Q 0.16 TCGA-ZJ-AAXU-01 12 66839238 66839238 C G GRIP1 Missense_Mutation p.E417Q 0.38 deleterious(0) probably_damaging(0.988) TCGA-ZJ-AAXU-01 12 6837154 6837154 C T COPS7A Silent p.Y75Y 0.11 TCGA-ZJ-AAXU-01 12 72278727 72278727 C T TBC1D15 Silent p.L160L 0.20 TCGA-ZJ-AAXU-01 12 7519883 7519883 C T CD163L1 Missense_Mutation p.E1410K 0.09 deleterious(0.03) benign(0.338) TCGA-ZJ-AAXU-01 12 80189520 80189520 C T PPP1R12A Silent p.E827E 0.19 TCGA-ZJ-AAXU-01 12 8083976 8083976 C T SLC2A3 Silent p.L125L 0.58 TCGA-ZJ-AAXU-01 12 85521701 85521701 G A LRRIQ1 Missense_Mutation p.E1367K 0.15 tolerated(0.44) benign(0.293) TCGA-ZJ-AAXU-01 12 88588754 88588754 G A TMTC3 Missense_Mutation p.M691I 0.21 tolerated(0.1) benign(0.007) TCGA-ZJ-AAXU-01 12 9092127 9092127 G C PHC1 3'UTR 0.15 TCGA-ZJ-AAXU-01 12 96974375 96974375 G C C12orf55 Missense_Mutation p.V933L 0.18 deleterious(0) possibly_damaging(0.782) TCGA-ZJ-AAXU-01 13 110835612 110835612 C A COL4A1 Nonsense_Mutation p.E637* 0.14 TCGA-ZJ-AAXU-01 13 111287815 111287815 C T CARKD Missense_Mutation p.L218F 0.35 tolerated(0.29) benign(0.088) TCGA-ZJ-AAXU-01 13 112724603 112724603 G A SOX1 3'UTR 0.24 TCGA-ZJ-AAXU-01 13 20077368 20077368 C T TPTE2 Missense_Mutation p.E3K 0.12 tolerated_low_confidence(0.6) benign(0) TCGA-ZJ-AAXU-01 13 28536721 28536721 T C CDX2 3'UTR 0.25 TCGA-ZJ-AAXU-01 13 36202313 36202313 G A NBEA Silent p.L2515L 0.36 TCGA-ZJ-AAXU-01 13 36747916 36747916 C T SOHLH2 Missense_Mutation p.E382K 0.12 tolerated(0.13) benign(0.025) TCGA-ZJ-AAXU-01 13 45010788 45010788 C G TSC22D1 Intron 0.32 TCGA-ZJ-AAXU-01 13 46577433 46577433 C T ZC3H13 Missense_Mutation p.R262H 0.15 unknown(0) TCGA-ZJ-AAXU-01 13 49047507 49047507 C G RB1 Nonsense_Mutation p.S834* 0.22 TCGA-ZJ-AAXU-01 13 67802132 67802132 G A PCDH9 Silent p.I147I 0.27 TCGA-ZJ-AAXU-01 14 106610512 106610512 A T IGHV3-15 Missense_Mutation p.M53K 0.42 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-ZJ-AAXU-01 14 35242872 35242872 C T BAZ1A Missense_Mutation p.E1020K 0.15 tolerated(0.21) possibly_damaging(0.899) TCGA-ZJ-AAXU-01 14 45636259 45636259 G A FANCM Missense_Mutation p.G632E 0.25 deleterious(0.01) benign(0.03) TCGA-ZJ-AAXU-01 14 54944125 54944125 G A GMFB 3'UTR 0.40 TCGA-ZJ-AAXU-01 14 60591555 60591555 G A PCNXL4 Missense_Mutation p.G655E 0.19 deleterious(0.03) probably_damaging(0.96) TCGA-ZJ-AAXU-01 14 65016688 65016688 G A PPP1R36 5'UTR 0.13 TCGA-ZJ-AAXU-01 14 72055446 72055446 C G SIPA1L1 Nonsense_Mutation p.S286* 0.21 TCGA-ZJ-AAXU-01 14 73136887 73136887 G C DPF3 3'UTR 0.25 TCGA-ZJ-AAXU-01 14 73136901 73136901 G T DPF3 3'UTR 0.17 TCGA-ZJ-AAXU-01 14 73137381 73137381 G A DPF3 3'UTR 0.32 TCGA-ZJ-AAXU-01 14 73137398 73137398 G C DPF3 3'UTR 0.36 TCGA-ZJ-AAXU-01 14 75231036 75231036 G A YLPM1 Missense_Mutation p.E282K 0.22 unknown(0) TCGA-ZJ-AAXU-01 14 76108205 76108205 C T FLVCR2 Silent p.L491L 0.23 TCGA-ZJ-AAXU-01 14 89061173 89061173 G C ZC3H14 Intron 0.15 TCGA-ZJ-AAXU-01 14 93276612 93276612 C T GOLGA5 Nonsense_Mutation p.Q336* 0.12 TCGA-ZJ-AAXU-01 14 95090121 95090121 G C SERPINA3 Missense_Mutation p.M414I 0.26 tolerated(0.32) benign(0.004) TCGA-ZJ-AAXU-01 15 102359130 102359130 C T OR4F15 Silent p.V247V 0.22 TCGA-ZJ-AAXU-01 15 28413564 28413564 C T HERC2 Missense_Mutation p.E3468K 0.15 benign(0.009) TCGA-ZJ-AAXU-01 15 33025273 33025273 G A GREM1 3'UTR 0.30 TCGA-ZJ-AAXU-01 15 34094099 34094099 G A RYR3 Silent p.V3316V 0.27 TCGA-ZJ-AAXU-01 15 34434460 34434460 G C KATNBL1 3'UTR 0.17 TCGA-ZJ-AAXU-01 15 34528906 34528906 C A SLC12A6 Intron 0.17 TCGA-ZJ-AAXU-01 15 34528913 34528913 C T SLC12A6 Missense_Mutation p.R1013K 0.16 tolerated(0.18) benign(0.014) TCGA-ZJ-AAXU-01 15 40358005 40358005 C T SRP14-AS1 RNA 0.26 TCGA-ZJ-AAXU-01 15 40382717 40382717 A G BMF 3'UTR 0.31 TCGA-ZJ-AAXU-01 15 40627987 40627987 C T C15orf52 Missense_Mutation p.E354K 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-ZJ-AAXU-01 15 41476741 41476741 C T EXD1 Silent p.Q311Q 0.21 TCGA-ZJ-AAXU-01 15 42681150 42681150 G A CAPN3 Silent p.L219L 0.42 TCGA-ZJ-AAXU-01 15 48584038 48584038 C G SLC12A1 Missense_Mutation p.I979M 0.34 deleterious(0.01) benign(0.223) TCGA-ZJ-AAXU-01 15 51792416 51792416 G A DMXL2 Missense_Mutation p.S1002F 0.29 deleterious(0) probably_damaging(0.94) TCGA-ZJ-AAXU-01 15 69563428 69563428 G C GLCE 3'UTR 0.20 TCGA-ZJ-AAXU-01 15 73027459 73027459 C G BBS4 Missense_Mutation p.L348V 0.25 deleterious(0) probably_damaging(0.973) TCGA-ZJ-AAXU-01 15 74336689 74336689 C T PML Silent p.L663L 0.24 TCGA-ZJ-AAXU-01 15 76225296 76225296 C T FBXO22 Silent p.F355F 0.36 TCGA-ZJ-AAXU-01 15 76449093 76449093 C G C15orf27 Missense_Mutation p.L126V 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-ZJ-AAXU-01 15 79587367 79587367 C T ANKRD34C 3'UTR 0.22 TCGA-ZJ-AAXU-01 15 83215206 83215206 G C CPEB1 Missense_Mutation p.F520L 0.33 deleterious(0.03) possibly_damaging(0.452) TCGA-ZJ-AAXU-01 15 83455557 83455557 C T FSD2 Missense_Mutation p.E196K 0.15 deleterious(0.04) benign(0.009) TCGA-ZJ-AAXU-01 15 86286973 86286973 C T AKAP13 Missense_Mutation p.S2774F 0.27 tolerated_low_confidence(0.06) probably_damaging(0.991) TCGA-ZJ-AAXU-01 15 93536219 93536219 G A CHD2 Missense_Mutation p.A1196T 0.36 tolerated(0.33) benign(0.011) TCGA-ZJ-AAXU-01 16 12875226 12875226 G A CPPED1 Silent p.F35F 0.24 TCGA-ZJ-AAXU-01 16 14334718 14334718 C T MKL2 Intron 0.20 TCGA-ZJ-AAXU-01 16 20359583 20359583 C T UMOD Missense_Mutation p.R312K 0.21 tolerated(0.65) benign(0.003) TCGA-ZJ-AAXU-01 16 23221130 23221130 G T SCNN1G Silent p.V379V 0.19 TCGA-ZJ-AAXU-01 16 2817093 2817093 C G SRRM2 Missense_Mutation p.I2188M 0.29 probably_damaging(0.996) TCGA-ZJ-AAXU-01 16 30007697 30007697 C G INO80E Silent p.L22L 0.17 TCGA-ZJ-AAXU-01 16 30748814 30748814 C A SRCAP Missense_Mutation p.P2485T 0.19 unknown(0) TCGA-ZJ-AAXU-01 16 30750134 30750134 C T SRCAP Missense_Mutation p.H2925Y 0.24 unknown(0) TCGA-ZJ-AAXU-01 16 4930092 4930092 C A UBN1 Missense_Mutation p.Q1122K 0.16 deleterious(0.01) benign(0.304) TCGA-ZJ-AAXU-01 16 4930807 4930807 C T UBN1 3'UTR 0.30 TCGA-ZJ-AAXU-01 16 4931141 4931141 C G UBN1 3'UTR 0.38 TCGA-ZJ-AAXU-01 16 4932218 4932218 C T UBN1 3'UTR 0.13 TCGA-ZJ-AAXU-01 16 51175601 51175601 G C SALL1 Missense_Mutation p.Q178E 0.24 tolerated(0.06) benign(0.188) TCGA-ZJ-AAXU-01 16 56643339 56643339 G T MT2A 3'UTR 0.58 TCGA-ZJ-AAXU-01 16 68293053 68293053 C T PLA2G15 Silent p.D244D 0.32 TCGA-ZJ-AAXU-01 16 84907565 84907565 G T CRISPLD2 Silent p.V384V 0.19 TCGA-ZJ-AAXU-01 16 89349343 89349343 C T ANKRD11 Missense_Mutation p.E1203K 0.42 possibly_damaging(0.872) TCGA-ZJ-AAXU-01 16 89981528 89981528 C G MC1R 5'Flank 0.22 TCGA-ZJ-AAXU-01 17 10614173 10614173 C T ADPRM Silent p.D247D 0.21 TCGA-ZJ-AAXU-01 17 16455653 16455653 G A ZNF287 Silent p.F601F 0.32 TCGA-ZJ-AAXU-01 17 16706438 16706438 G C CCDC144A 3'UTR 0.11 TCGA-ZJ-AAXU-01 17 2323148 2323148 C T METTL16 3'UTR 0.16 TCGA-ZJ-AAXU-01 17 34803383 34803383 C T TBC1D3G Missense_Mutation p.D146N 0.26 tolerated(0.07) benign(0.127) TCGA-ZJ-AAXU-01 17 37563340 37563340 A T MED1 3'UTR 0.37 TCGA-ZJ-AAXU-01 17 39323800 39323800 G T KRTAP4-3 3'UTR 0.11 TCGA-ZJ-AAXU-01 17 40317683 40317683 G A KCNH4 Silent p.I623I 0.24 TCGA-ZJ-AAXU-01 17 42336878 42336878 C T SLC4A1 Silent p.T227T 0.23 TCGA-ZJ-AAXU-01 17 42931682 42931682 G C EFTUD2 Missense_Mutation p.Q768E 0.12 deleterious(0) benign(0.393) TCGA-ZJ-AAXU-01 17 43229179 43229179 G C HEXIM1 3'UTR 0.11 TCGA-ZJ-AAXU-01 17 45013084 45013084 C T GOSR2 Intron 0.20 TCGA-ZJ-AAXU-01 17 4849269 4849269 C T PFN1 Missense_Mutation p.E117K 0.36 tolerated(0.15) probably_damaging(0.998) TCGA-ZJ-AAXU-01 17 48685323 48685323 G C CACNA1G Missense_Mutation p.E1550Q 0.33 deleterious(0.01) possibly_damaging(0.881) TCGA-ZJ-AAXU-01 17 48685334 48685334 G A CACNA1G Silent p.R1553R 0.30 TCGA-ZJ-AAXU-01 17 49072865 49072865 C T SPAG9 Missense_Mutation p.M666I 0.19 tolerated(0.11) benign(0.002) TCGA-ZJ-AAXU-01 17 4996396 4996396 C G ZFP3 3'UTR 0.06 TCGA-ZJ-AAXU-01 17 53241155 53241155 G A STXBP4 3'UTR 0.20 TCGA-ZJ-AAXU-01 17 53471149 53471149 G C MMD 3'UTR 0.09 TCGA-ZJ-AAXU-01 17 56344741 56344741 C G LPO Silent p.L575L 0.29 TCGA-ZJ-AAXU-01 17 59876594 59876594 G A BRIP1 Missense_Mutation p.R403W 0.26 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 17 60059559 60059559 C T MED13 Missense_Mutation p.D1269N 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-ZJ-AAXU-01 17 7188180 7188180 C T SLC2A4 Silent p.F314F 0.09 TCGA-ZJ-AAXU-01 17 72351521 72351521 G C KIF19 3'UTR 0.18 TCGA-ZJ-AAXU-01 17 7347537 7347537 G A FGF11 3'UTR 0.41 TCGA-ZJ-AAXU-01 17 74725841 74725841 C T METTL23 Missense_Mutation p.H17Y 0.31 tolerated(0.12) benign(0.024) TCGA-ZJ-AAXU-01 17 74732077 74732077 C T SRSF2 3'UTR 0.26 TCGA-ZJ-AAXU-01 17 74732266 74732266 C T SRSF2 Missense_Mutation p.E215K 0.29 deleterious(0.02) unknown(0) TCGA-ZJ-AAXU-01 17 74732409 74732409 C T SRSF2 Missense_Mutation p.R167Q 0.24 tolerated(0.7) unknown(0) TCGA-ZJ-AAXU-01 17 7678594 7678594 G A DNAH2 Silent p.G1585G 0.36 TCGA-ZJ-AAXU-01 17 76888385 76888385 G A DDC8 Silent p.L67L 0.17 TCGA-ZJ-AAXU-01 17 7690336 7690336 C T DNAH2 Silent p.I2196I 0.18 TCGA-ZJ-AAXU-01 17 78237378 78237378 G A RNF213 5'UTR 0.24 TCGA-ZJ-AAXU-01 17 79650133 79650133 G T ARL16 Silent p.I72I 0.32 TCGA-ZJ-AAXU-01 17 8370276 8370276 C G NDEL1 Missense_Mutation p.P325A 0.22 tolerated(0.86) benign(0.187) TCGA-ZJ-AAXU-01 18 121305 121305 T G ROCK1P1 RNA 0.24 TCGA-ZJ-AAXU-01 18 14763994 14763994 G T ANKRD30B Missense_Mutation p.G377V 0.17 tolerated(0.14) benign(0.359) TCGA-ZJ-AAXU-01 18 14828284 14828284 G A ANKRD30B Silent p.V798V 0.06 TCGA-ZJ-AAXU-01 18 23866114 23866114 C T TAF4B Missense_Mutation p.S414F 0.27 deleterious(0.01) possibly_damaging(0.868) TCGA-ZJ-AAXU-01 18 29115286 29115286 C T DSG2 Missense_Mutation p.S445F 0.12 deleterious(0.02) probably_damaging(1) TCGA-ZJ-AAXU-01 18 31432307 31432307 C G NOL4 3'UTR 0.16 TCGA-ZJ-AAXU-01 18 33736567 33736567 G A ELP2 Missense_Mutation p.E537K 0.20 deleterious(0) possibly_damaging(0.806) TCGA-ZJ-AAXU-01 18 44104802 44104802 A G LOXHD1 Missense_Mutation p.C426R 0.56 tolerated(0.37) possibly_damaging(0.88) TCGA-ZJ-AAXU-01 18 6898625 6898625 G C ARHGAP28 Intron 0.14 TCGA-ZJ-AAXU-01 18 72343531 72343531 C T ZNF407 Missense_Mutation p.L186F 0.17 tolerated(0.43) benign(0.003) TCGA-ZJ-AAXU-01 18 74681746 74681746 G C ZNF236 3'UTR 0.22 TCGA-ZJ-AAXU-01 18 9255870 9255870 G C ANKRD12 Missense_Mutation p.E869Q 0.19 deleterious_low_confidence(0) possibly_damaging(0.645) TCGA-ZJ-AAXU-01 18 9547539 9547539 G A PPP4R1 3'UTR 0.12 TCGA-ZJ-AAXU-01 19 10270440 10270440 C G DNMT1 Missense_Mutation p.D392H 0.25 deleterious(0) possibly_damaging(0.866) TCGA-ZJ-AAXU-01 19 10754722 10754722 G A SLC44A2 3'UTR 0.33 TCGA-ZJ-AAXU-01 19 12574861 12574861 G A ZNF709 Silent p.F625F 0.38 TCGA-ZJ-AAXU-01 19 12739734 12739734 G C ZNF791 Missense_Mutation p.G464A 0.19 tolerated(0.05) probably_damaging(0.998) TCGA-ZJ-AAXU-01 19 14065230 14065230 G A DCAF15 Missense_Mutation p.E71K 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-ZJ-AAXU-01 19 1422349 1422349 C T DAZAP1 Silent p.V139V 0.27 TCGA-ZJ-AAXU-01 19 16222771 16222771 G T RAB8A Silent p.G20G 0.26 TCGA-ZJ-AAXU-01 19 17531424 17531424 C G MVB12A Silent p.V89V 0.26 TCGA-ZJ-AAXU-01 19 17873612 17873612 G A FCHO1 Silent p.V23V 0.32 TCGA-ZJ-AAXU-01 19 18376666 18376666 G C KIAA1683 Missense_Mutation p.Q562E 0.32 tolerated(0.08) benign(0.01) TCGA-ZJ-AAXU-01 19 19136127 19136127 C T SUGP2 Missense_Mutation p.D344N 0.14 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 19 20044521 20044521 G C ZNF93 Missense_Mutation p.G253R 0.26 tolerated(0.07) possibly_damaging(0.833) TCGA-ZJ-AAXU-01 19 22941347 22941347 C T ZNF99 Missense_Mutation p.C455Y 0.32 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 19 23543769 23543769 G A ZNF91 Missense_Mutation p.S671L 0.32 deleterious(0.02) possibly_damaging(0.908) TCGA-ZJ-AAXU-01 19 23544021 23544021 G C ZNF91 Nonsense_Mutation p.S587* 0.36 TCGA-ZJ-AAXU-01 19 2430826 2430826 C G LMNB2 3'UTR 0.24 TCGA-ZJ-AAXU-01 19 35504248 35504248 C T GRAMD1A Missense_Mutation p.S232F 0.35 deleterious(0.04) benign(0.212) TCGA-ZJ-AAXU-01 19 37310832 37310832 G A ZNF790 Silent p.F138F 0.21 TCGA-ZJ-AAXU-01 19 37643562 37643562 C T ZNF585A Missense_Mutation p.M358I 0.22 tolerated(0.14) benign(0) TCGA-ZJ-AAXU-01 19 43093759 43093759 G C CEACAM8 Missense_Mutation p.L185V 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-ZJ-AAXU-01 19 43268415 43268415 C T PSG8 Nonsense_Mutation p.W28* 0.20 TCGA-ZJ-AAXU-01 19 4366571 4366571 C T SH3GL1 Splice_Site p.X39_splice 0.33 TCGA-ZJ-AAXU-01 19 43690536 43690536 G C PSG5 Missense_Mutation p.P8A 0.22 tolerated(0.19) possibly_damaging(0.704) TCGA-ZJ-AAXU-01 19 43866368 43866368 C T CD177 3'UTR 0.15 TCGA-ZJ-AAXU-01 19 45028093 45028093 G C CEACAM20 RNA 0.16 TCGA-ZJ-AAXU-01 19 50985908 50985908 C G EMC10 3'UTR 0.52 TCGA-ZJ-AAXU-01 19 53383933 53383933 T G ZNF320 Silent p.S482S 0.28 TCGA-ZJ-AAXU-01 19 53473632 53473632 C T ZNF702P RNA 0.20 TCGA-ZJ-AAXU-01 19 54677619 54677619 G A MBOAT7 3'UTR 0.36 TCGA-ZJ-AAXU-01 19 54746045 54746045 C T LILRA6 Missense_Mutation p.R71K 0.15 tolerated(0.25) benign(0.013) TCGA-ZJ-AAXU-01 19 54746058 54746058 C T LILRA6 Missense_Mutation p.E67K 0.17 tolerated(0.77) benign(0.308) TCGA-ZJ-AAXU-01 19 54973479 54973479 C T LENG9 Missense_Mutation p.E433K 0.21 tolerated(0.27) probably_damaging(0.93) TCGA-ZJ-AAXU-01 19 5688068 5688068 G A HSD11B1L Missense_Mutation p.M270I 0.15 tolerated(0.61) benign(0) TCGA-ZJ-AAXU-01 19 58490231 58490231 C A ZNF606 Missense_Mutation p.R606I 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-ZJ-AAXU-01 19 58640235 58640235 G A ZNF329 Silent p.F212F 0.10 TCGA-ZJ-AAXU-01 19 603704 603704 A G HCN2 Missense_Mutation p.T265A 0.19 deleterious(0) probably_damaging(0.951) TCGA-ZJ-AAXU-01 19 6960385 6960385 G C EMR4P RNA 0.21 TCGA-ZJ-AAXU-01 19 7523460 7523460 G C ARHGEF18 Missense_Mutation p.E560D 0.07 tolerated(0.06) benign(0.276) TCGA-ZJ-AAXU-01 19 7524829 7524829 G C ARHGEF18 Missense_Mutation p.E613Q 0.33 deleterious(0.02) possibly_damaging(0.758) TCGA-ZJ-AAXU-01 19 7524847 7524847 G C ARHGEF18 Missense_Mutation p.E619Q 0.38 deleterious(0.03) probably_damaging(0.989) TCGA-ZJ-AAXU-01 19 7830076 7830076 C G CLEC4M Missense_Mutation p.L46V 0.17 deleterious(0.04) benign(0.137) TCGA-ZJ-AAXU-01 19 9021090 9021090 C T MUC16 Silent p.R12411R 0.21 TCGA-ZJ-AAXU-01 19 9068213 9068213 G C MUC16 Missense_Mutation p.I6411M 0.20 unknown(0) TCGA-ZJ-AAXU-01 1 104203263 104203263 A T AMY1A Missense_Mutation p.S356C 0.30 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXU-01 1 108116723 108116723 C T VAV3 Silent p.K816K 0.17 TCGA-ZJ-AAXU-01 1 109869658 109869658 G A SORT1 Silent p.I533I 0.18 TCGA-ZJ-AAXU-01 1 11167510 11167510 A - MTOR 3'UTR 0.22 TCGA-ZJ-AAXU-01 1 111825269 111825269 G C CHIAP2 RNA 0.17 TCGA-ZJ-AAXU-01 1 115218248 115218248 G A AMPD1 Missense_Mutation p.P561S 0.18 deleterious(0.02) probably_damaging(1) TCGA-ZJ-AAXU-01 1 118454637 118454637 C T GDAP2 Missense_Mutation p.D180N 0.28 tolerated(0.15) possibly_damaging(0.556) TCGA-ZJ-AAXU-01 1 118537129 118537129 C T SPAG17 Missense_Mutation p.R1693H 0.14 tolerated(0.05) possibly_damaging(0.755) TCGA-ZJ-AAXU-01 1 144856995 144856995 C G PDE4DIP Missense_Mutation p.E2164Q 0.09 deleterious(0.02) possibly_damaging(0.747) TCGA-ZJ-AAXU-01 1 151497189 151497189 G C CGN Missense_Mutation p.E481Q 0.17 tolerated(0.49) possibly_damaging(0.862) TCGA-ZJ-AAXU-01 1 152280496 152280496 C G FLG Missense_Mutation p.R2289T 0.13 benign(0.227) TCGA-ZJ-AAXU-01 1 152280790 152280790 C T FLG Missense_Mutation p.R2191K 0.26 benign(0.067) TCGA-ZJ-AAXU-01 1 152327567 152327567 G T FLG2 Missense_Mutation p.Q899K 0.22 unknown(0) TCGA-ZJ-AAXU-01 1 152671697 152671697 G A LCE2A Silent p.%3D 0.23 TCGA-ZJ-AAXU-01 1 15361294 15361294 G A KAZN Silent p.V156V 0.18 TCGA-ZJ-AAXU-01 1 15546198 15546198 G A TMEM51 Missense_Mutation p.E241K 0.31 deleterious(0.01) possibly_damaging(0.623) TCGA-ZJ-AAXU-01 1 157648372 157648372 C T FCRL3 3'UTR 0.56 TCGA-ZJ-AAXU-01 1 160001238 160001238 G C PIGM Missense_Mutation p.L98V 0.25 tolerated(0.1) benign(0.082) TCGA-ZJ-AAXU-01 1 161693306 161693306 C G FCRLB Missense_Mutation p.L68V 0.16 tolerated(0.06) probably_damaging(0.978) TCGA-ZJ-AAXU-01 1 162794758 162794758 C T RP11-331H2.4 RNA 0.22 TCGA-ZJ-AAXU-01 1 165638651 165638651 C G ALDH9A1 Missense_Mutation p.E323Q 0.15 tolerated(0.1) benign(0.091) TCGA-ZJ-AAXU-01 1 166831640 166831640 G A TADA1 Nonsense_Mutation p.Q114* 0.30 TCGA-ZJ-AAXU-01 1 169771785 169771785 G A C1orf112 Missense_Mutation p.M30I 0.33 deleterious(0.01) benign(0.441) TCGA-ZJ-AAXU-01 1 173842655 173842655 G A ZBTB37 Missense_Mutation p.R325K 0.32 tolerated(0.83) benign(0.001) TCGA-ZJ-AAXU-01 1 176734973 176734973 G T PAPPA2 Missense_Mutation p.Q1441H 0.19 deleterious(0) probably_damaging(0.935) TCGA-ZJ-AAXU-01 1 177030249 177030249 C T ASTN1 Missense_Mutation p.E146K 0.12 tolerated_low_confidence(0.13) benign(0.009) TCGA-ZJ-AAXU-01 1 183184692 183184692 G A LAMC2 Missense_Mutation p.D125N 0.25 deleterious(0.03) benign(0.021) TCGA-ZJ-AAXU-01 1 185946960 185946960 G A HMCN1 Missense_Mutation p.E805K 0.24 probably_damaging(0.987) TCGA-ZJ-AAXU-01 1 19566852 19566852 G A EMC1 Missense_Mutation p.S242L 0.13 deleterious(0.01) benign(0.047) TCGA-ZJ-AAXU-01 1 205813996 205813996 C G PM20D1 Silent p.L173L 0.41 TCGA-ZJ-AAXU-01 1 207222495 207222495 C T YOD1 Missense_Mutation p.R306K 0.11 tolerated(0.83) benign(0.003) TCGA-ZJ-AAXU-01 1 212208796 212208796 C G INTS7 5'UTR 0.35 TCGA-ZJ-AAXU-01 1 230930982 230930982 C T CAPN9 Silent p.F648F 0.17 TCGA-ZJ-AAXU-01 1 232607269 232607269 C A SIPA1L2 Silent p.L697L 0.16 TCGA-ZJ-AAXU-01 1 240370783 240370783 C G FMN2 Missense_Mutation p.L891V 0.28 unknown(0) TCGA-ZJ-AAXU-01 1 247587975 247587975 C T NLRP3 Silent p.F410F 0.38 TCGA-ZJ-AAXU-01 1 247614365 247614365 C G OR2B11 Missense_Mutation p.R307T 0.32 deleterious(0.04) possibly_damaging(0.587) TCGA-ZJ-AAXU-01 1 248128795 248128795 G A OR2AK2 Silent p.L54L 0.33 TCGA-ZJ-AAXU-01 1 248309220 248309220 C T OR2M5 Silent p.F257F 0.23 TCGA-ZJ-AAXU-01 1 26286861 26286861 G A PAFAH2 3'UTR 0.28 TCGA-ZJ-AAXU-01 1 31409502 31409502 G C PUM1 Missense_Mutation p.I1141M 0.31 tolerated(0.05) benign(0.102) TCGA-ZJ-AAXU-01 1 32508547 32508548 - C KHDRBS1 3'UTR 0.24 TCGA-ZJ-AAXU-01 1 34024902 34024902 C G CSMD2 Intron 0.19 TCGA-ZJ-AAXU-01 1 3807468 3807468 C T C1orf174 Missense_Mutation p.E95K 0.33 tolerated(0.15) benign(0.094) TCGA-ZJ-AAXU-01 1 43916632 43916632 G A SZT2 3'UTR 0.29 TCGA-ZJ-AAXU-01 1 45809990 45809990 G A TESK2 3'UTR 0.26 TCGA-ZJ-AAXU-01 1 47684721 47684721 G A TAL1 3'UTR 0.18 TCGA-ZJ-AAXU-01 1 54266438 54266438 G A NDC1 Nonsense_Mutation p.Q384* 0.23 TCGA-ZJ-AAXU-01 1 62231987 62231987 G C INADL Missense_Mutation p.D76H 0.09 deleterious(0) probably_damaging(0.95) TCGA-ZJ-AAXU-01 1 62676148 62676148 G A L1TD1 Missense_Mutation p.E568K 0.29 tolerated(0.45) benign(0.053) TCGA-ZJ-AAXU-01 1 62676177 62676177 G C L1TD1 Missense_Mutation p.L577F 0.36 tolerated(0.11) probably_damaging(0.943) TCGA-ZJ-AAXU-01 1 75622597 75622597 G C LHX8 Missense_Mutation p.R277T 0.31 deleterious(0) possibly_damaging(0.778) TCGA-ZJ-AAXU-01 1 79125090 79125090 G C IFI44 Missense_Mutation p.D312H 0.13 deleterious(0.02) probably_damaging(0.985) TCGA-ZJ-AAXU-01 1 7912997 7912997 G C UTS2 Intron 0.25 TCGA-ZJ-AAXU-01 1 82409144 82409144 C T LPHN2 Nonsense_Mutation p.R297* 0.23 TCGA-ZJ-AAXU-01 1 85656135 85656135 G A SYDE2 Missense_Mutation p.S349L 0.11 tolerated_low_confidence(0.16) benign(0.004) TCGA-ZJ-AAXU-01 1 85656237 85656237 G A SYDE2 Missense_Mutation p.S315F 0.08 tolerated_low_confidence(0.18) benign(0.004) TCGA-ZJ-AAXU-01 1 87111701 87111701 C T RP4-651E10.4 Intron 0.15 TCGA-ZJ-AAXU-01 1 9995686 9995686 C G LZIC Splice_Site p.X34_splice 0.24 TCGA-ZJ-AAXU-01 20 23966723 23966723 G A GGTLC1 Silent p.F98F 0.15 TCGA-ZJ-AAXU-01 20 2777252 2777252 G C CPXM1 Missense_Mutation p.I322M 0.26 deleterious(0.01) probably_damaging(0.91) TCGA-ZJ-AAXU-01 20 35772132 35772132 G A MROH8 Silent p.F468F 0.14 TCGA-ZJ-AAXU-01 20 35772147 35772147 G C MROH8 Missense_Mutation p.F463L 0.12 deleterious(0) possibly_damaging(0.873) TCGA-ZJ-AAXU-01 20 37620106 37620106 G A DHX35 Missense_Mutation p.D154N 0.24 deleterious(0) probably_damaging(0.992) TCGA-ZJ-AAXU-01 20 42979396 42979396 C T R3HDML Silent p.F242F 0.21 TCGA-ZJ-AAXU-01 20 43583827 43583827 G C TOMM34 Missense_Mutation p.L88V 0.09 deleterious(0) benign(0.434) TCGA-ZJ-AAXU-01 20 44506939 44506939 G A ZSWIM3 Missense_Mutation p.C581Y 0.20 deleterious(0.01) possibly_damaging(0.903) TCGA-ZJ-AAXU-01 20 44697227 44697227 C G NCOA5 Missense_Mutation p.R139T 0.21 deleterious(0.02) probably_damaging(0.973) TCGA-ZJ-AAXU-01 20 47260963 47260963 G A PREX1 Silent p.S1195S 0.35 TCGA-ZJ-AAXU-01 20 47887078 47887078 G C ZNFX1 Nonsense_Mutation p.S424* 0.25 TCGA-ZJ-AAXU-01 20 55108499 55108499 G A FAM209B Silent p.G34G 0.16 TCGA-ZJ-AAXU-01 20 56141095 56141095 C G PCK1 3'UTR 0.30 TCGA-ZJ-AAXU-01 21 15918586 15918586 G C SAMSN1 Intron 0.16 TCGA-ZJ-AAXU-01 21 45877937 45877937 G C LRRC3 3'UTR 0.29 TCGA-ZJ-AAXU-01 21 45877991 45877991 G A LRRC3 3'UTR 0.25 TCGA-ZJ-AAXU-01 22 21354707 21354707 C T THAP7 Missense_Mutation p.R131Q 0.26 tolerated(0.69) benign(0) TCGA-ZJ-AAXU-01 22 29837772 29837772 G C RFPL1 Silent p.G205G 0.30 TCGA-ZJ-AAXU-01 22 30863028 30863028 C T SEC14L3 Missense_Mutation p.D154N 0.23 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 22 32587033 32587033 G C RFPL2 Missense_Mutation p.S288C 0.12 tolerated(0.21) probably_damaging(0.979) TCGA-ZJ-AAXU-01 22 37693694 37693694 G T CYTH4 Missense_Mutation p.K108N 0.12 deleterious(0) probably_damaging(0.988) TCGA-ZJ-AAXU-01 22 38120395 38120395 C G TRIOBP Missense_Mutation p.S611C 0.08 deleterious_low_confidence(0) unknown(0) TCGA-ZJ-AAXU-01 22 39096113 39096113 G A JOSD1 5'UTR 0.35 TCGA-ZJ-AAXU-01 22 42089535 42089535 C T C22orf46 Silent p.F95F 0.22 TCGA-ZJ-AAXU-01 22 42388764 42388764 G A SEPT3 Missense_Mutation p.E288K 0.54 deleterious(0.01) probably_damaging(0.993) TCGA-ZJ-AAXU-01 22 44692568 44692568 C T KIAA1644 Missense_Mutation p.E89K 0.11 tolerated(0.08) probably_damaging(0.982) TCGA-ZJ-AAXU-01 22 50479642 50479642 C G TTLL8 Intron 0.31 TCGA-ZJ-AAXU-01 2 102013990 102013990 C T RFX8 3'UTR 0.29 TCGA-ZJ-AAXU-01 2 108910104 108910104 G A SULT1C2 Intron 0.16 TCGA-ZJ-AAXU-01 2 109098898 109098898 G A GCC2 Silent p.Q1112Q 0.44 TCGA-ZJ-AAXU-01 2 111556674 111556674 G C ACOXL Missense_Mutation p.E182Q 0.17 tolerated(0.11) possibly_damaging(0.539) TCGA-ZJ-AAXU-01 2 113483823 113483823 G A NT5DC4 Missense_Mutation p.E356K 0.17 deleterious(0.05) benign(0.027) TCGA-ZJ-AAXU-01 2 128347711 128347711 C T MYO7B Silent p.F633F 0.30 TCGA-ZJ-AAXU-01 2 128463984 128463984 C T WDR33 Silent p.R1308R 0.13 TCGA-ZJ-AAXU-01 2 128568681 128568681 C G WDR33 5'UTR 0.21 TCGA-ZJ-AAXU-01 2 135712805 135712805 C A CCNT2 3'UTR 0.17 TCGA-ZJ-AAXU-01 2 139316739 139316739 G A SPOPL Missense_Mutation p.E210K 0.18 deleterious(0.03) possibly_damaging(0.462) TCGA-ZJ-AAXU-01 2 152507129 152507129 C T NEB Missense_Mutation p.D2396N 0.21 benign(0.054) TCGA-ZJ-AAXU-01 2 153471452 153471452 G A FMNL2 Missense_Mutation p.D384N 0.26 possibly_damaging(0.899) TCGA-ZJ-AAXU-01 2 165946236 165946236 G A SCN3A 3'UTR 0.24 TCGA-ZJ-AAXU-01 2 168116248 168116248 G C XIRP2 3'UTR 0.11 TCGA-ZJ-AAXU-01 2 169627223 169627223 G A CERS6 3'UTR 0.20 TCGA-ZJ-AAXU-01 2 170502221 170502221 T C CCDC173 3'UTR 0.21 TCGA-ZJ-AAXU-01 2 179334432 179334432 C G FKBP7 Missense_Mutation p.E152Q 0.32 deleterious(0.01) probably_damaging(0.977) TCGA-ZJ-AAXU-01 2 17946178 17946178 C G GEN1 Silent p.L121L 0.07 TCGA-ZJ-AAXU-01 2 179534118 179534118 C G TTN Missense_Mutation p.E11843Q 0.16 TCGA-ZJ-AAXU-01 2 180843027 180843027 C T CWC22 Missense_Mutation p.M157I 0.21 tolerated(0.3) benign(0.023) TCGA-ZJ-AAXU-01 2 197700580 197700580 G C PGAP1 3'UTR 0.41 TCGA-ZJ-AAXU-01 2 200137043 200137043 G A SATB2 Missense_Mutation p.S698L 0.23 tolerated(0.2) benign(0.002) TCGA-ZJ-AAXU-01 2 201342875 201342875 C T SPATS2L 3'UTR 0.24 TCGA-ZJ-AAXU-01 2 202591976 202591976 C T ALS2 Missense_Mutation p.E980K 0.17 deleterious(0) probably_damaging(0.984) TCGA-ZJ-AAXU-01 2 204571328 204571328 C T CD28 5'UTR 0.36 TCGA-ZJ-AAXU-01 2 219897243 219897243 C T CCDC108 Silent p.L198L 0.11 TCGA-ZJ-AAXU-01 2 220084947 220084947 G A ATG9A 3'UTR 0.23 TCGA-ZJ-AAXU-01 2 227661805 227661807 CTC - IRS1 In_Frame_Del p.E550del 0.24 TCGA-ZJ-AAXU-01 2 227924258 227924258 G A COL4A4 Missense_Mutation p.S749L 0.21 possibly_damaging(0.587) TCGA-ZJ-AAXU-01 2 25022643 25022643 G T CENPO Missense_Mutation p.G49V 0.26 tolerated(0.05) benign(0.004) TCGA-ZJ-AAXU-01 2 27278901 27278901 C G AGBL5 Missense_Mutation p.I420M 0.31 deleterious(0) probably_damaging(0.937) TCGA-ZJ-AAXU-01 2 27528515 27528515 G T TRIM54 Nonsense_Mutation p.E267* 0.16 TCGA-ZJ-AAXU-01 2 29169687 29169687 C T WDR43 3'UTR 0.35 TCGA-ZJ-AAXU-01 2 29287322 29287322 C T C2orf71 3'UTR 0.30 TCGA-ZJ-AAXU-01 2 31215706 31215706 C T GALNT14 Intron 0.15 TCGA-ZJ-AAXU-01 2 32474885 32474885 A - NLRC4 Frame_Shift_Del p.I683Nfs*12 0.27 TCGA-ZJ-AAXU-01 2 37395098 37395098 C T SULT6B1 Missense_Mutation p.E260K 0.22 tolerated(0.07) benign(0.005) TCGA-ZJ-AAXU-01 2 37395193 37395193 C G SULT6B1 Missense_Mutation p.W228S 0.29 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 2 39456544 39456544 C G CDKL4 Missense_Mutation p.V44L 0.33 deleterious(0) benign(0.002) TCGA-ZJ-AAXU-01 2 39492373 39492373 C T MAP4K3 Missense_Mutation p.E703K 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-ZJ-AAXU-01 2 54845285 54845285 C G SPTBN1 Missense_Mutation p.L240V 0.18 tolerated(1) benign(0.023) TCGA-ZJ-AAXU-01 2 55516141 55516141 C A CCDC88A 3'UTR 0.23 TCGA-ZJ-AAXU-01 2 55646234 55646234 G C CCDC88A 5'UTR 0.15 TCGA-ZJ-AAXU-01 2 58362286 58362286 G A VRK2 Missense_Mutation p.E270K 0.23 deleterious(0.02) possibly_damaging(0.615) TCGA-ZJ-AAXU-01 2 61336380 61336380 G C KIAA1841 Missense_Mutation p.E565Q 0.15 deleterious(0.01) possibly_damaging(0.867) TCGA-ZJ-AAXU-01 2 61390250 61390250 G C C2orf74 Missense_Mutation p.Q98H 0.23 tolerated(0.14) benign(0.266) TCGA-ZJ-AAXU-01 2 64120067 64120067 G A VPS54 3'Flank 0.23 TCGA-ZJ-AAXU-01 2 70519891 70519891 C G SNRPG Intron 0.24 TCGA-ZJ-AAXU-01 2 71626726 71626726 G T ZNF638 Missense_Mutation p.K846N 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXU-01 2 87085459 87085459 C T CD8B Missense_Mutation p.E42K 0.31 tolerated(0.14) benign(0.062) TCGA-ZJ-AAXU-01 2 9437464 9437464 C A ASAP2 Missense_Mutation p.L79M 0.22 tolerated(0.17) benign(0.318) TCGA-ZJ-AAXU-01 3 101038447 101038447 C T IMPG2 Silent p.V105V 0.13 TCGA-ZJ-AAXU-01 3 105260599 105260599 C T ALCAM Silent p.I327I 0.15 TCGA-ZJ-AAXU-01 3 112648208 112648208 C T CD200R1 Missense_Mutation p.E117K 0.17 tolerated(0.1) benign(0.355) TCGA-ZJ-AAXU-01 3 118865154 118865154 G A C3orf30 Missense_Mutation p.E40K 0.19 tolerated(0.32) benign(0.002) TCGA-ZJ-AAXU-01 3 119887046 119887046 C T GPR156 Silent p.S426S 0.31 TCGA-ZJ-AAXU-01 3 122422635 122422635 G A PARP14 Missense_Mutation p.R1043K 0.17 tolerated(0.93) benign(0.004) TCGA-ZJ-AAXU-01 3 123033092 123033092 G C ADCY5 Missense_Mutation p.S811C 0.13 tolerated(0.08) benign(0.02) TCGA-ZJ-AAXU-01 3 128516835 128516835 A C RAB7A Missense_Mutation p.N35H 0.14 tolerated(0.05) possibly_damaging(0.771) TCGA-ZJ-AAXU-01 3 129284749 129284749 C T PLXND1 Missense_Mutation p.D1435N 0.11 tolerated(0.14) probably_damaging(0.953) TCGA-ZJ-AAXU-01 3 129284854 129284854 C T PLXND1 Missense_Mutation p.E1400K 0.11 deleterious(0.01) benign(0.393) TCGA-ZJ-AAXU-01 3 129369846 129369846 G A TMCC1 3'UTR 0.27 TCGA-ZJ-AAXU-01 3 130104153 130104153 G C COL6A5 Missense_Mutation p.D603H 0.14 deleterious(0) probably_damaging(0.996) TCGA-ZJ-AAXU-01 3 133534528 133534528 C T SRPRB Silent p.L169L 0.18 TCGA-ZJ-AAXU-01 3 134670759 134670759 A G EPHB1 Missense_Mutation p.T224A 0.09 tolerated(0.36) benign(0.006) TCGA-ZJ-AAXU-01 3 137843560 137843560 G C A4GNT Missense_Mutation p.S190C 0.15 deleterious(0.01) probably_damaging(0.96) TCGA-ZJ-AAXU-01 3 138037001 138037001 G A NME9 Silent p.L64L 0.17 TCGA-ZJ-AAXU-01 3 141006280 141006280 G C ACPL2 Missense_Mutation p.E164Q 0.10 tolerated(0.22) benign(0.241) TCGA-ZJ-AAXU-01 3 1427405 1427405 T C CNTN6 Silent p.F876F 0.38 TCGA-ZJ-AAXU-01 3 1445124 1445124 G C CNTN6 3'UTR 0.37 TCGA-ZJ-AAXU-01 3 148596253 148596253 G C CPA3 Missense_Mutation p.E99Q 0.07 tolerated(0.62) possibly_damaging(0.896) TCGA-ZJ-AAXU-01 3 151475189 151475189 G C AADACL2 Missense_Mutation p.C338S 0.09 deleterious(0.01) probably_damaging(1) TCGA-ZJ-AAXU-01 3 161221222 161221222 C T OTOL1 Missense_Mutation p.P309L 0.22 tolerated(0.13) possibly_damaging(0.639) TCGA-ZJ-AAXU-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.26 deleterious(0.02) probably_damaging(0.959) TCGA-ZJ-AAXU-01 3 179448426 179448426 C T USP13 Missense_Mutation p.L395F 0.15 deleterious(0.02) possibly_damaging(0.744) TCGA-ZJ-AAXU-01 3 184796111 184796111 G A C3orf70 3'UTR 0.20 TCGA-ZJ-AAXU-01 3 184922451 184922451 C G EHHADH Silent p.R221R 0.15 TCGA-ZJ-AAXU-01 3 185191008 185191008 C G MAP3K13 Missense_Mutation p.S630C 0.08 tolerated_low_confidence(0.08) benign(0.28) TCGA-ZJ-AAXU-01 3 186370403 186370403 C T FETUB Missense_Mutation p.L378F 0.16 tolerated(0.12) benign(0.142) TCGA-ZJ-AAXU-01 3 196293859 196293859 C T WDR53 5'UTR 0.43 TCGA-ZJ-AAXU-01 3 197346706 197346706 C T AC024560.3 RNA 0.08 TCGA-ZJ-AAXU-01 3 23932482 23932482 G A UBE2E1 3'UTR 0.26 TCGA-ZJ-AAXU-01 3 25792685 25792685 G C NGLY1 Missense_Mutation p.P188A 0.14 tolerated(0.08) benign(0.005) TCGA-ZJ-AAXU-01 3 27332750 27332750 C T NEK10 Intron 0.43 TCGA-ZJ-AAXU-01 3 45151971 45151971 C T CDCP1 Missense_Mutation p.E340K 0.34 deleterious(0.02) possibly_damaging(0.705) TCGA-ZJ-AAXU-01 3 45153572 45153572 C G CDCP1 Intron 0.41 TCGA-ZJ-AAXU-01 3 49294476 49294476 C G CCDC36 Missense_Mutation p.L516V 0.21 tolerated(0.17) possibly_damaging(0.487) TCGA-ZJ-AAXU-01 3 49690773 49690773 C T BSN Nonsense_Mutation p.Q1262* 0.57 TCGA-ZJ-AAXU-01 3 78734974 78734974 C G ROBO1 Missense_Mutation p.D422H 0.37 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 3 98216771 98216771 G C OR5K2 Missense_Mutation p.E83Q 0.22 tolerated(0.54) benign(0.006) TCGA-ZJ-AAXU-01 3 98514871 98514871 G A DCBLD2 3'UTR 0.12 TCGA-ZJ-AAXU-01 4 100273860 100273860 G A ADH1C 5'UTR 0.11 TCGA-ZJ-AAXU-01 4 100851739 100851739 C T DNAJB14 Missense_Mutation p.G58E 0.35 tolerated(0.16) possibly_damaging(0.559) TCGA-ZJ-AAXU-01 4 109675835 109675835 C T ETNPPL Missense_Mutation p.E148K 0.13 deleterious(0) benign(0.297) TCGA-ZJ-AAXU-01 4 110788829 110788829 C T LRIT3 Missense_Mutation p.H208Y 0.14 deleterious(0.01) possibly_damaging(0.877) TCGA-ZJ-AAXU-01 4 121698356 121698356 G C PRDM5 Missense_Mutation p.I508M 0.29 tolerated(0.08) possibly_damaging(0.824) TCGA-ZJ-AAXU-01 4 123533809 123533809 G C IL21 3'UTR 0.23 TCGA-ZJ-AAXU-01 4 126412246 126412246 C T FAT4 Nonsense_Mutation p.Q4757* 0.21 TCGA-ZJ-AAXU-01 4 129783423 129783423 G A JADE1 Intron 0.35 TCGA-ZJ-AAXU-01 4 142151373 142151373 C G ZNF330 Missense_Mutation p.Q158E 0.25 deleterious(0) probably_damaging(0.964) TCGA-ZJ-AAXU-01 4 144391019 144391019 C G GAB1 3'UTR 0.53 TCGA-ZJ-AAXU-01 4 148465606 148465606 G C EDNRA 3'UTR 0.19 TCGA-ZJ-AAXU-01 4 151142859 151142859 C G DCLK2 Nonsense_Mutation p.S405* 0.28 TCGA-ZJ-AAXU-01 4 153242604 153242604 G A FBXW7 3'UTR 0.20 TCGA-ZJ-AAXU-01 4 153253852 153253852 G T FBXW7 Nonsense_Mutation p.S294* 0.33 TCGA-ZJ-AAXU-01 4 155243492 155243492 A T DCHS2 Silent p.V934V 0.18 TCGA-ZJ-AAXU-01 4 156634520 156634520 C T GUCY1A3 Missense_Mutation p.L453F 0.21 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXU-01 4 170345854 170345854 C T NEK1 Silent p.L1024L 0.29 TCGA-ZJ-AAXU-01 4 170347360 170347360 C T NEK1 Missense_Mutation p.E971K 0.24 tolerated(0.27) benign(0.002) TCGA-ZJ-AAXU-01 4 17805617 17805617 C G DCAF16 Missense_Mutation p.E50Q 0.20 tolerated_low_confidence(0.05) benign(0.039) TCGA-ZJ-AAXU-01 4 187518921 187518921 C T FAT1 Missense_Mutation p.D4095N 0.65 possibly_damaging(0.631) TCGA-ZJ-AAXU-01 4 187531018 187531018 G A FAT1 Silent p.F3335F 0.59 TCGA-ZJ-AAXU-01 4 187541642 187541642 G C FAT1 Nonsense_Mutation p.S2033* 0.72 TCGA-ZJ-AAXU-01 4 187542700 187542700 G A FAT1 Silent p.V1680V 0.67 TCGA-ZJ-AAXU-01 4 23886444 23886444 G C PPARGC1A Silent p.L55L 0.13 TCGA-ZJ-AAXU-01 4 38775972 38775972 C T TLR10 Missense_Mutation p.D414N 0.40 tolerated(0.16) benign(0.015) TCGA-ZJ-AAXU-01 4 4301661 4301661 G A ZBTB49 5'UTR 0.27 TCGA-ZJ-AAXU-01 4 48514570 48514570 G A FRYL Silent p.V2691V 0.35 TCGA-ZJ-AAXU-01 4 48559037 48559037 G A FRYL Silent p.I1408I 0.27 TCGA-ZJ-AAXU-01 4 56319253 56319253 C T CLOCK Missense_Mutation p.E392K 0.11 deleterious(0.04) benign(0.071) TCGA-ZJ-AAXU-01 4 56496595 56496595 C T NMU Missense_Mutation p.E49K 0.25 deleterious(0.01) benign(0.015) TCGA-ZJ-AAXU-01 4 57209775 57209775 G A AASDH Missense_Mutation p.H910Y 0.22 tolerated(0.06) benign(0.017) TCGA-ZJ-AAXU-01 4 71346552 71346552 C T MUC7 Missense_Mutation p.H31Y 0.11 tolerated(0.16) possibly_damaging(0.859) TCGA-ZJ-AAXU-01 4 74000911 74000911 G C ANKRD17 Missense_Mutation p.Q1053E 0.11 benign(0.258) TCGA-ZJ-AAXU-01 4 75671787 75671787 C T BTC 3'UTR 0.26 TCGA-ZJ-AAXU-01 4 78638703 78638703 G C CNOT6L 3'UTR 0.32 TCGA-ZJ-AAXU-01 4 83905666 83905666 G A LIN54 Missense_Mutation p.S111L 0.21 deleterious_low_confidence(0.01) benign(0.184) TCGA-ZJ-AAXU-01 4 85731332 85731332 G C WDFY3 Missense_Mutation p.L685V 0.37 deleterious(0.02) benign(0.007) TCGA-ZJ-AAXU-01 4 87691295 87691295 C T PTPN13 Silent p.F1587F 0.20 TCGA-ZJ-AAXU-01 4 87691304 87691304 C T PTPN13 Silent p.L1590L 0.20 TCGA-ZJ-AAXU-01 4 87692532 87692532 C G PTPN13 Nonsense_Mutation p.S1676* 0.29 TCGA-ZJ-AAXU-01 4 87692583 87692583 C T PTPN13 Missense_Mutation p.S1693L 0.19 tolerated(0.23) benign(0.138) TCGA-ZJ-AAXU-01 4 89652549 89652549 C T FAM13A Missense_Mutation p.M958I 0.31 tolerated(0.05) benign(0.009) TCGA-ZJ-AAXU-01 5 137897401 137897401 T C HSPA9 Silent p.Q350Q 0.55 TCGA-ZJ-AAXU-01 5 139197091 139197091 G A PSD2 Missense_Mutation p.G348R 0.17 deleterious(0.02) possibly_damaging(0.904) TCGA-ZJ-AAXU-01 5 140249640 140249640 G C PCDHA11 Missense_Mutation p.E318Q 0.16 tolerated_low_confidence(1) benign(0.023) TCGA-ZJ-AAXU-01 5 140908461 140908461 G C DIAPH1 Missense_Mutation p.F942L 0.19 probably_damaging(0.994) TCGA-ZJ-AAXU-01 5 1441493 1441493 C G SLC6A3 Missense_Mutation p.K133N 0.08 deleterious(0.01) benign(0.279) TCGA-ZJ-AAXU-01 5 149450109 149450109 G A CSF1R Missense_Mutation p.R370C 0.34 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXU-01 5 150138487 150138487 C T DCTN4 Silent p.P23P 0.18 TCGA-ZJ-AAXU-01 5 15928577 15928577 C A FBXL7 Missense_Mutation p.L236I 0.17 tolerated(0.11) benign(0.02) TCGA-ZJ-AAXU-01 5 175763820 175763820 C T SIMC1 Silent p.L323L 0.17 TCGA-ZJ-AAXU-01 5 176003005 176003005 G T CDHR2 Missense_Mutation p.W338L 0.29 tolerated(0.77) benign(0.147) TCGA-ZJ-AAXU-01 5 251536 251536 G A SDHA Missense_Mutation p.E583K 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.719) TCGA-ZJ-AAXU-01 5 50046008 50046008 C T PARP8 Missense_Mutation p.S57F 0.25 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-ZJ-AAXU-01 5 5464176 5464176 G T KIAA0947 Nonsense_Mutation p.E1577* 0.12 TCGA-ZJ-AAXU-01 5 56218951 56218951 C G MIER3 3'UTR 0.21 TCGA-ZJ-AAXU-01 5 58270256 58270256 G A PDE4D 3'UTR 0.27 TCGA-ZJ-AAXU-01 5 58271500 58271500 G A PDE4D Missense_Mutation p.S666F 0.18 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-ZJ-AAXU-01 5 61779015 61779015 G C IPO11 Missense_Mutation p.E346Q 0.29 tolerated(0.1) possibly_damaging(0.558) TCGA-ZJ-AAXU-01 5 64314256 64314256 G C CWC27 3'UTR 0.41 TCGA-ZJ-AAXU-01 5 6607014 6607014 G A NSUN2 Missense_Mutation p.S507L 0.09 tolerated(0.1) possibly_damaging(0.71) TCGA-ZJ-AAXU-01 5 76348534 76348534 C T AGGF1 Missense_Mutation p.H457Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AAXU-01 5 79029922 79029922 G C CMYA5 Missense_Mutation p.L1778F 0.27 possibly_damaging(0.879) TCGA-ZJ-AAXU-01 5 80063845 80063845 C T MSH3 Nonsense_Mutation p.Q664* 0.21 TCGA-ZJ-AAXU-01 6 100988066 100988066 G C ASCC3 Silent p.V1916V 0.20 TCGA-ZJ-AAXU-01 6 109560645 109560645 G A C6orf183 RNA 0.10 TCGA-ZJ-AAXU-01 6 110429834 110429834 G C WASF1 Missense_Mutation p.Q107E 0.15 deleterious(0) unknown(0) TCGA-ZJ-AAXU-01 6 112397277 112397277 C T TUBE1 Silent p.V225V 0.11 TCGA-ZJ-AAXU-01 6 117869518 117869518 G A DCBLD1 Intron 0.26 TCGA-ZJ-AAXU-01 6 117881559 117881559 C G GOPC 3'UTR 0.30 TCGA-ZJ-AAXU-01 6 127608582 127608582 C T RNF146 Missense_Mutation p.S275L 0.40 tolerated(0.09) benign(0.375) TCGA-ZJ-AAXU-01 6 128403631 128403631 G A PTPRK Silent p.V576V 0.22 TCGA-ZJ-AAXU-01 6 146708103 146708103 C T GRM1 Silent p.F560F 0.18 TCGA-ZJ-AAXU-01 6 149911890 149911890 C T GINM1 Silent p.D303D 0.28 TCGA-ZJ-AAXU-01 6 155578106 155578106 C T TIAM2 Nonsense_Mutation p.Q1653* 0.19 TCGA-ZJ-AAXU-01 6 155728362 155728362 G A NOX3 Silent p.D494D 0.21 TCGA-ZJ-AAXU-01 6 158924557 158924557 G C TULP4 Missense_Mutation p.E1288Q 0.15 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-ZJ-AAXU-01 6 160579696 160579696 C G SLC22A1 3'UTR 0.42 TCGA-ZJ-AAXU-01 6 161653091 161653091 C T AGPAT4 Missense_Mutation p.R52K 0.20 tolerated(0.23) benign(0.016) TCGA-ZJ-AAXU-01 6 167771405 167771405 C G TCP10 3'UTR 0.30 TCGA-ZJ-AAXU-01 6 168307902 168307902 G A MLLT4 Missense_Mutation p.E568K 0.18 tolerated(0.06) possibly_damaging(0.802) TCGA-ZJ-AAXU-01 6 17675537 17675537 G A NUP153 Missense_Mutation p.H216Y 0.10 deleterious(0.01) possibly_damaging(0.653) TCGA-ZJ-AAXU-01 6 27223933 27223933 C G PRSS16 3'UTR 0.30 TCGA-ZJ-AAXU-01 6 29911954 29911954 G A HLA-A Silent p.L225L 0.15 TCGA-ZJ-AAXU-01 6 31594784 31594784 G A PRRC2A Missense_Mutation p.E367K 0.35 unknown(0) TCGA-ZJ-AAXU-01 6 31974846 31974846 C A AL645922.1 Missense_Mutation p.L12F 0.24 benign(0.002) TCGA-ZJ-AAXU-01 6 35289152 35289152 C G DEF6 Missense_Mutation p.Q621E 0.23 tolerated_low_confidence(0.53) unknown(0) TCGA-ZJ-AAXU-01 6 36870004 36870004 C A C6orf89 Missense_Mutation p.A73E 0.47 deleterious(0) benign(0.247) TCGA-ZJ-AAXU-01 6 43166352 43166352 G A CUL9 Missense_Mutation p.E937K 0.21 tolerated(0.07) benign(0.168) TCGA-ZJ-AAXU-01 6 44216418 44216418 C G HSP90AB1 Missense_Mutation p.Q18E 0.23 deleterious(0.02) benign(0.413) TCGA-ZJ-AAXU-01 6 46047580 46047580 C G CLIC5 Missense_Mutation p.D134H 0.16 deleterious_low_confidence(0.03) benign(0.005) TCGA-ZJ-AAXU-01 6 56323773 56323773 C G DST 3'UTR 0.11 TCGA-ZJ-AAXU-01 6 66063384 66063384 G A EYS Nonsense_Mutation p.Q476* 0.20 TCGA-ZJ-AAXU-01 6 72975160 72975160 T C RIMS1 Missense_Mutation p.C1088R 0.39 tolerated(0.08) benign(0) TCGA-ZJ-AAXU-01 6 80196713 80196713 C G LCA5 3'UTR 0.24 TCGA-ZJ-AAXU-01 6 97694513 97694513 G T MMS22L Silent p.I391I 0.11 TCGA-ZJ-AAXU-01 7 110765291 110765291 G A LRRN3 3'UTR 0.38 TCGA-ZJ-AAXU-01 7 117432586 117432586 C T CTTNBP2 Missense_Mutation p.E222K 0.23 tolerated(0.21) benign(0.009) TCGA-ZJ-AAXU-01 7 135261059 135261059 T C NUP205 Silent p.L129L 0.22 TCGA-ZJ-AAXU-01 7 142575686 142575686 C G TRPV6 Missense_Mutation p.Q74H 0.14 deleterious(0.01) possibly_damaging(0.782) TCGA-ZJ-AAXU-01 7 144380028 144380028 A G TPK1 Silent p.Y53Y 0.33 TCGA-ZJ-AAXU-01 7 154720332 154720332 G A PAXIP1-AS2 5'UTR 0.25 TCGA-ZJ-AAXU-01 7 154720379 154720379 G A PAXIP1-AS2 Nonsense_Mutation p.W7* 0.09 TCGA-ZJ-AAXU-01 7 23023614 23023614 C T FAM126A Silent p.K34K 0.36 TCGA-ZJ-AAXU-01 7 23023623 23023623 C T FAM126A Silent p.L31L 0.35 TCGA-ZJ-AAXU-01 7 49842334 49842334 G A VWC2 Missense_Mutation p.E242K 0.16 deleterious(0) possibly_damaging(0.887) TCGA-ZJ-AAXU-01 7 71252198 71252198 C T CALN1 3'UTR 0.18 TCGA-ZJ-AAXU-01 7 72855194 72855194 G A BAZ1B 3'UTR 0.20 TCGA-ZJ-AAXU-01 7 73511456 73511456 C T LIMK1 Missense_Mutation p.T113M 0.16 deleterious(0.01) benign(0.031) TCGA-ZJ-AAXU-01 7 81332032 81332032 C G HGF Missense_Mutation p.M684I 0.19 tolerated(0.55) benign(0.005) TCGA-ZJ-AAXU-01 7 87174303 87174303 C A ABCB1 Nonsense_Mutation p.E634* 0.12 TCGA-ZJ-AAXU-01 7 93623173 93623173 C T BET1 3'UTR 0.27 TCGA-ZJ-AAXU-01 7 99818249 99818249 C A PVRIG Silent p.L183L 0.18 TCGA-ZJ-AAXU-01 8 103298804 103298804 G C UBR5 Missense_Mutation p.Q1667E 0.21 tolerated(1) possibly_damaging(0.759) TCGA-ZJ-AAXU-01 8 103316325 103316325 G A UBR5 Missense_Mutation p.S967L 0.21 tolerated(0.11) probably_damaging(0.942) TCGA-ZJ-AAXU-01 8 116426948 116426948 C A TRPS1 Missense_Mutation p.G1063V 0.41 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-ZJ-AAXU-01 8 127565277 127565277 G A FAM84B 3'UTR 0.21 TCGA-ZJ-AAXU-01 8 12885202 12885202 C G KIAA1456 3'UTR 0.21 TCGA-ZJ-AAXU-01 8 132971908 132971908 C T EFR3A Nonsense_Mutation p.Q285* 0.15 TCGA-ZJ-AAXU-01 8 133141486 133141486 G C KCNQ3 3'UTR 0.08 TCGA-ZJ-AAXU-01 8 1952679 1952679 C G KBTBD11 3'UTR 0.20 TCGA-ZJ-AAXU-01 8 23082547 23082547 G A TNFRSF10A Silent p.L10L 0.18 TCGA-ZJ-AAXU-01 8 2800005 2800005 G C CSMD1 Silent p.L3508L 0.21 TCGA-ZJ-AAXU-01 8 327881 327881 C T FAM87A RNA 0.19 TCGA-ZJ-AAXU-01 8 37996512 37996512 G A ASH2L Missense_Mutation p.E604K 0.23 deleterious(0.05) probably_damaging(0.99) TCGA-ZJ-AAXU-01 8 38279349 38279349 G A FGFR1 Silent p.L380L 0.26 TCGA-ZJ-AAXU-01 8 48761785 48761785 G A PRKDC Missense_Mutation p.R2403C 0.20 benign(0.336) TCGA-ZJ-AAXU-01 8 48790313 48790313 G A PRKDC Nonsense_Mutation p.Q1778* 0.37 TCGA-ZJ-AAXU-01 8 48875552 48875552 C G MCM4 Missense_Mutation p.I215M 0.09 deleterious(0.02) benign(0.017) TCGA-ZJ-AAXU-01 8 53570440 53570440 G C RB1CC1 Missense_Mutation p.S650C 0.47 tolerated(0.09) benign(0.004) TCGA-ZJ-AAXU-01 8 59060819 59060819 G A FAM110B 3'UTR 0.27 TCGA-ZJ-AAXU-01 8 59061307 59061307 G A FAM110B 3'UTR 0.25 TCGA-ZJ-AAXU-01 8 61736527 61736527 G A CHD7 Silent p.L1110L 0.23 TCGA-ZJ-AAXU-01 8 61769182 61769182 C G CHD7 Nonsense_Mutation p.S2448* 0.28 TCGA-ZJ-AAXU-01 8 69243572 69243572 G C C8orf34 Missense_Mutation p.E109Q 0.19 tolerated(0.22) benign(0.041) TCGA-ZJ-AAXU-01 8 86041525 86041525 C T LRRCC1 Nonsense_Mutation p.Q513* 0.16 TCGA-ZJ-AAXU-01 8 95262705 95262705 G A GEM Missense_Mutation p.R242W 0.22 deleterious(0) probably_damaging(0.997) TCGA-ZJ-AAXU-01 8 95500763 95500763 G C KIAA1429 3'UTR 0.27 TCGA-ZJ-AAXU-01 8 99440936 99440936 G A KCNS2 Silent p.V243V 0.24 TCGA-ZJ-AAXU-01 9 103092232 103092232 C T TEX10 Missense_Mutation p.M490I 0.19 tolerated(0.78) benign(0.001) TCGA-ZJ-AAXU-01 9 112029769 112029769 G A EPB41L4B Missense_Mutation p.R173C 0.16 deleterious(0) probably_damaging(0.94) TCGA-ZJ-AAXU-01 9 119382599 119382599 G A ASTN2 Silent p.L1015L 0.14 TCGA-ZJ-AAXU-01 9 127969929 127969929 G A RABEPK Missense_Mutation p.R47K 0.13 tolerated(0.49) benign(0.003) TCGA-ZJ-AAXU-01 9 129595961 129595961 G C ZBTB43 Missense_Mutation p.M391I 0.30 tolerated(0.06) benign(0.11) TCGA-ZJ-AAXU-01 9 130536640 130536640 G A SH2D3C Silent p.D48D 0.33 TCGA-ZJ-AAXU-01 9 13136166 13136166 C T MPDZ Silent p.V1436V 0.19 TCGA-ZJ-AAXU-01 9 134340364 134340364 G A PRRC2B Missense_Mutation p.R540Q 0.13 tolerated(1) benign(0) TCGA-ZJ-AAXU-01 9 135470072 135470072 G C DDX31 3'UTR 0.38 TCGA-ZJ-AAXU-01 9 136577743 136577743 G A SARDH Silent p.I442I 0.45 TCGA-ZJ-AAXU-01 9 136582557 136582557 G A SARDH Silent p.F347F 0.20 TCGA-ZJ-AAXU-01 9 19786684 19786684 C T SLC24A2 Missense_Mutation p.E61K 0.17 tolerated_low_confidence(0.78) benign(0) TCGA-ZJ-AAXU-01 9 20717865 20717865 C T FOCAD Nonsense_Mutation p.Q44* 0.19 TCGA-ZJ-AAXU-01 9 32784294 32784294 G A TMEM215 Missense_Mutation p.G38E 0.19 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 9 33112885 33112885 C G B4GALT1 3'UTR 0.19 TCGA-ZJ-AAXU-01 9 35380519 35380519 G A UNC13B Missense_Mutation p.D671N 0.34 tolerated(0.42) probably_damaging(0.999) TCGA-ZJ-AAXU-01 9 36169698 36169698 G A CCIN Missense_Mutation p.E67K 0.44 tolerated(0.06) probably_damaging(0.988) TCGA-ZJ-AAXU-01 9 36211770 36211770 G T CLTA Nonstop_Mutation p.*249Lext*39 0.42 TCGA-ZJ-AAXU-01 9 37745467 37745467 G A FRMPD1 Silent p.Q1146Q 0.24 TCGA-ZJ-AAXU-01 9 86504024 86504024 C A KIF27 Nonsense_Mutation p.E652* 0.09 TCGA-ZJ-AAXU-01 9 88272458 88272458 G C AGTPBP1 Silent p.L267L 0.36 TCGA-ZJ-AAXU-01 9 90313645 90313645 C T DAPK1 Nonsense_Mutation p.R896* 0.22 TCGA-ZJ-AAXU-01 9 99107679 99107679 C G SLC35D2 Missense_Mutation p.D165H 0.36 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 X 100808781 100808781 C T ARMCX1 Nonsense_Mutation p.Q290* 0.21 TCGA-ZJ-AAXU-01 X 101970441 101970441 G A GPRASP2 Missense_Mutation p.R215K 0.25 tolerated(0.39) benign(0.015) TCGA-ZJ-AAXU-01 X 102339686 102339686 C T NXF3 Missense_Mutation p.D52N 0.16 tolerated(0.65) benign(0.003) TCGA-ZJ-AAXU-01 X 102632641 102632641 G A NGFRAP1 Missense_Mutation p.M74I 0.37 tolerated(0.05) benign(0.003) TCGA-ZJ-AAXU-01 X 105153494 105153494 C G NRK Missense_Mutation p.Q622E 0.23 deleterious_low_confidence(0.02) benign(0.085) TCGA-ZJ-AAXU-01 X 108691359 108691359 G T GUCY2F Missense_Mutation p.P503H 0.21 deleterious(0) possibly_damaging(0.621) TCGA-ZJ-AAXU-01 X 111914508 111914508 C T LHFPL1 Silent p.Q37Q 0.27 TCGA-ZJ-AAXU-01 X 11207018 11207018 C G ARHGAP6 Missense_Mutation p.D303H 0.21 deleterious(0) benign(0.289) TCGA-ZJ-AAXU-01 X 114400482 114400482 G C LRCH2 Missense_Mutation p.Q374E 0.09 tolerated(0.28) probably_damaging(0.983) TCGA-ZJ-AAXU-01 X 117724231 117724231 C T DOCK11 Missense_Mutation p.S702L 0.16 tolerated(1) benign(0.001) TCGA-ZJ-AAXU-01 X 118250562 118250562 C T KIAA1210 Missense_Mutation p.E183K 0.27 tolerated(0.07) possibly_damaging(0.877) TCGA-ZJ-AAXU-01 X 118726381 118726381 G C NKRF Missense_Mutation p.S42C 0.24 tolerated(0.08) benign(0.002) TCGA-ZJ-AAXU-01 X 119005839 119005839 C G NDUFA1 5'UTR 0.18 TCGA-ZJ-AAXU-01 X 122802015 122802015 C T THOC2 Missense_Mutation p.E338K 0.13 tolerated(0.13) benign(0.007) TCGA-ZJ-AAXU-01 X 123199773 123199773 G A STAG2 Silent p.L691L 0.14 TCGA-ZJ-AAXU-01 X 128699848 128699848 G A OCRL Silent p.L448L 0.24 TCGA-ZJ-AAXU-01 X 129306157 129306157 G A RAB33A Missense_Mutation p.V41M 0.19 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXU-01 X 129758419 129758419 G C ENOX2 3'UTR 0.12 TCGA-ZJ-AAXU-01 X 135314079 135314079 G A MAP7D3 Missense_Mutation p.S346L 0.21 tolerated(0.61) benign(0.034) TCGA-ZJ-AAXU-01 X 144911317 144911317 G A TMEM257 3'UTR 0.22 TCGA-ZJ-AAXU-01 X 148037722 148037722 C G AFF2 Missense_Mutation p.S716C 0.24 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AAXU-01 X 152615883 152615883 C T ZNF275 3'UTR 0.36 TCGA-ZJ-AAXU-01 X 152772344 152772344 G T BGN Nonsense_Mutation p.E245* 0.17 TCGA-ZJ-AAXU-01 X 155004842 155004842 C G SPRY3 3'UTR 0.20 TCGA-ZJ-AAXU-01 X 19398345 19398345 A T MAP3K15 Missense_Mutation p.Y828N 0.45 deleterious(0) probably_damaging(0.994) TCGA-ZJ-AAXU-01 X 19398347 19398347 C T MAP3K15 Missense_Mutation p.G827E 0.45 deleterious(0.02) possibly_damaging(0.823) TCGA-ZJ-AAXU-01 X 19948005 19948005 C T CXorf23 Silent p.Q639Q 0.20 TCGA-ZJ-AAXU-01 X 27765538 27765538 T A DCAF8L2 Missense_Mutation p.S176T 0.23 tolerated(0.14) benign(0.17) TCGA-ZJ-AAXU-01 X 27766219 27766219 G A DCAF8L2 Missense_Mutation p.E403K 0.18 tolerated(0.15) benign(0.083) TCGA-ZJ-AAXU-01 X 30260533 30260533 C T MAGEB4 Missense_Mutation p.S94F 0.21 tolerated(0.18) benign(0.346) TCGA-ZJ-AAXU-01 X 34962257 34962257 G C FAM47B Missense_Mutation p.E437Q 0.21 tolerated(0.18) possibly_damaging(0.472) TCGA-ZJ-AAXU-01 X 37553551 37553551 C G XK Silent p.V86V 0.18 TCGA-ZJ-AAXU-01 X 37658281 37658281 G C CYBB Missense_Mutation p.E250Q 0.29 tolerated(0.25) benign(0.001) TCGA-ZJ-AAXU-01 X 37670219 37670219 C T CYBB 3'UTR 0.18 TCGA-ZJ-AAXU-01 X 38008746 38008746 G A SRPX 3'UTR 0.14 TCGA-ZJ-AAXU-01 X 43592008 43592008 A C MAOA Missense_Mutation p.T340P 0.31 deleterious(0) probably_damaging(0.958) TCGA-ZJ-AAXU-01 X 43817722 43817722 G C NDP Nonsense_Mutation p.S57* 0.11 TCGA-ZJ-AAXU-01 X 50053435 50053435 C T CCNB3 Missense_Mutation p.H756Y 0.23 deleterious(0.05) benign(0.001) TCGA-ZJ-AAXU-01 X 51488450 51488450 G A GSPT2 Silent p.V576V 0.27 TCGA-ZJ-AAXU-01 X 51637825 51637825 C G MAGED1 Missense_Mutation p.Q50E 0.27 deleterious_low_confidence(0) unknown(0) TCGA-ZJ-AAXU-01 X 53559765 53559765 T C HUWE1 3'UTR 0.25 TCGA-ZJ-AAXU-01 X 70520891 70520891 A G NONO 3'UTR 0.25 TCGA-ZJ-AAXU-01 X 70618551 70618551 G A TAF1 Silent p.K1270K 0.15 TCGA-ZJ-AAXU-01 X 71351178 71351178 G A RGAG4 Silent p.F71F 0.19 TCGA-ZJ-AAXU-01 X 71458758 71458758 C T ERCC6L Missense_Mutation p.E2K 0.25 deleterious_low_confidence(0.01) benign(0.196) TCGA-ZJ-AAXU-01 X 71710791 71710791 C T HDAC8 Missense_Mutation p.G206R 0.25 deleterious(0) probably_damaging(1) TCGA-ZJ-AAXU-01 X 71802325 71802325 C T PHKA1 Missense_Mutation p.E1141K 0.18 tolerated(0.18) benign(0.058) TCGA-ZJ-AAXU-01 X 79932499 79932499 C T BRWD3 Missense_Mutation p.R1673K 0.14 deleterious_low_confidence(0) unknown(0) TCGA-ZJ-AAXU-01 X 79932804 79932804 G A BRWD3 Silent p.I1571I 0.14 TCGA-ZJ-AAXU-01 X 85769284 85769284 C G DACH2 Nonsense_Mutation p.S177* 0.09 TCGA-ZJ-AAXU-01 X 86869446 86869446 C T KLHL4 Silent p.L200L 0.23 TCGA-ZJ-AB0H-01 10 101731761 101731761 G C DNMBP Missense_Mutation p.L41V 0.15 deleterious(0) probably_damaging(0.955) TCGA-ZJ-AB0H-01 10 114045855 114045855 C A TECTB Nonsense_Mutation p.Y98* 0.17 TCGA-ZJ-AB0H-01 10 116050995 116050995 G C VWA2 3'Flank 0.12 TCGA-ZJ-AB0H-01 10 134166511 134166511 C T LRRC27 Intron 0.14 TCGA-ZJ-AB0H-01 10 15880261 15880261 C G FAM188A Missense_Mutation p.E143Q 0.12 tolerated(0.12) benign(0.064) TCGA-ZJ-AB0H-01 10 37422876 37422876 C T ANKRD30A Missense_Mutation p.S161L 0.11 deleterious(0.01) possibly_damaging(0.849) TCGA-ZJ-AB0H-01 10 50019673 50019673 G C WDFY4 Missense_Mutation p.V1712L 0.07 tolerated(0.06) benign(0.05) TCGA-ZJ-AB0H-01 10 70725186 70725186 C T DDX21 Silent p.F280F 0.10 TCGA-ZJ-AB0H-01 10 71211433 71211433 C T TSPAN15 Missense_Mutation p.S28F 0.10 deleterious(0) possibly_damaging(0.824) TCGA-ZJ-AB0H-01 10 7769680 7769680 G A ITIH2 Missense_Mutation p.E390K 0.14 tolerated(0.06) probably_damaging(0.976) TCGA-ZJ-AB0H-01 10 99361636 99361636 C G HOGA1 Silent p.A241A 0.19 TCGA-ZJ-AB0H-01 11 119060307 119060307 C T PDZD3 3'UTR 0.31 TCGA-ZJ-AB0H-01 11 5080386 5080386 C T OR52E2 Missense_Mutation p.V158I 0.15 tolerated(0.39) benign(0.062) TCGA-ZJ-AB0H-01 11 57982262 57982262 C G OR1S1 Missense_Mutation p.Q16E 0.13 tolerated(1) benign(0.15) TCGA-ZJ-AB0H-01 11 89424667 89424667 C T FOLH1B RNA 0.09 TCGA-ZJ-AB0H-01 12 101603441 101603441 G A SLC5A8 Silent p.T62T 0.08 TCGA-ZJ-AB0H-01 12 113756798 113756798 G A SLC8B1 Missense_Mutation p.S258F 0.06 deleterious(0.05) benign(0.438) TCGA-ZJ-AB0H-01 12 120575087 120575087 C G GCN1L1 Missense_Mutation p.E2234Q 0.08 benign(0.094) TCGA-ZJ-AB0H-01 12 23686251 23686251 C G SOX5 3'UTR 0.12 TCGA-ZJ-AB0H-01 12 40942380 40942380 G T MUC19 Intron 0.14 TCGA-ZJ-AB0H-01 12 42632394 42632394 G A AC020629.1 3'Flank 0.14 TCGA-ZJ-AB0H-01 12 72003960 72003960 G A ZFC3H1 3'UTR 0.20 TCGA-ZJ-AB0H-01 13 20277155 20277155 G C PSPC1 3'UTR 0.16 TCGA-ZJ-AB0H-01 13 29608202 29608202 G A MTUS2 Missense_Mutation p.A806T 0.19 tolerated(0.06) benign(0.155) TCGA-ZJ-AB0H-01 13 52718994 52718994 G C NEK3 Silent p.L212L 0.10 TCGA-ZJ-AB0H-01 14 53020191 53020191 C T GPR137C Missense_Mutation p.S109F 0.19 deleterious(0.03) unknown(0) TCGA-ZJ-AB0H-01 14 68217586 68217586 C G ZFYVE26 Intron 0.56 TCGA-ZJ-AB0H-01 14 92959959 92959959 G A SLC24A4 Missense_Mutation p.R619Q 0.15 tolerated(0.29) benign(0.009) TCGA-ZJ-AB0H-01 15 101862808 101862808 C T PCSK6 Silent p.Q793Q 0.17 TCGA-ZJ-AB0H-01 15 33026100 33026100 C G GREM1 3'UTR 0.07 TCGA-ZJ-AB0H-01 15 52571854 52571854 G C MYO5C Silent p.V52V 0.21 TCGA-ZJ-AB0H-01 15 57544626 57544626 G A TCF12 Missense_Mutation p.R399Q 0.16 deleterious(0.04) probably_damaging(0.993) TCGA-ZJ-AB0H-01 15 66044845 66044845 G C DENND4A Missense_Mutation p.R145G 0.09 deleterious(0) probably_damaging(0.978) TCGA-ZJ-AB0H-01 15 93447871 93447871 C G CHD2 Intron 0.20 TCGA-ZJ-AB0H-01 16 1399402 1399402 G A TSR3 3'UTR 0.18 TCGA-ZJ-AB0H-01 16 19702672 19702672 C T C16orf62 Intron 0.11 TCGA-ZJ-AB0H-01 16 21464317 21464317 G C snoU13 3'Flank 0.12 TCGA-ZJ-AB0H-01 16 30583346 30583346 C A ZNF688 5'UTR 0.08 TCGA-ZJ-AB0H-01 16 66919428 66919428 T C PDP2 Missense_Mutation p.L414P 0.08 deleterious(0) probably_damaging(1) TCGA-ZJ-AB0H-01 16 70852405 70852405 C T HYDIN Missense_Mutation p.G4833D 0.09 probably_damaging(0.982) TCGA-ZJ-AB0H-01 16 71220748 71220748 C A HYDIN Missense_Mutation p.L17F 0.16 probably_damaging(0.986) TCGA-ZJ-AB0H-01 16 739545 739545 G A WDR24 Silent p.I32I 0.16 TCGA-ZJ-AB0H-01 16 81190494 81190494 C T PKD1L2 RNA 0.09 TCGA-ZJ-AB0H-01 17 19880929 19880929 C A AKAP10 Missense_Mutation p.A22S 0.23 tolerated_low_confidence(0.07) benign(0.108) TCGA-ZJ-AB0H-01 17 45286808 45286808 A T MYL4 Missense_Mutation p.E7V 0.14 tolerated_low_confidence(0.2) unknown(0) TCGA-ZJ-AB0H-01 17 47297255 47297255 C T ABI3 Missense_Mutation p.P195L 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AB0H-01 17 48263689 48263689 C T COL1A1 Missense_Mutation p.D1332N 0.23 unknown(0) TCGA-ZJ-AB0H-01 17 58235719 58235719 G A CA4 Missense_Mutation p.R219H 0.14 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AB0H-01 17 73491660 73491660 C T KIAA0195 Silent p.P960P 0.07 TCGA-ZJ-AB0H-01 17 74533567 74533567 A C CYGB Missense_Mutation p.S20A 0.12 deleterious(0.03) benign(0.053) TCGA-ZJ-AB0H-01 18 14537916 14537916 G C POTEC Missense_Mutation p.Q232E 0.28 deleterious(0) benign(0) TCGA-ZJ-AB0H-01 18 19154283 19154283 A G ESCO1 Silent p.H174H 0.37 TCGA-ZJ-AB0H-01 18 24127328 24127328 G C KCTD1 Intron 0.17 TCGA-ZJ-AB0H-01 18 31318875 31318875 G C ASXL3 Missense_Mutation p.V503L 0.33 probably_damaging(0.994) TCGA-ZJ-AB0H-01 18 44559850 44559850 C G TCEB3B Missense_Mutation p.E596Q 0.25 deleterious(0) possibly_damaging(0.575) TCGA-ZJ-AB0H-01 18 74091117 74091117 G A ZNF516 Missense_Mutation p.P985S 0.33 tolerated(0.17) benign(0.002) TCGA-ZJ-AB0H-01 19 11505116 11505116 C T RGL3 Missense_Mutation p.E705K 0.16 tolerated(0.22) unknown(0) TCGA-ZJ-AB0H-01 19 15904979 15904979 G A OR10H5 Missense_Mutation p.G41S 0.38 tolerated(0.06) probably_damaging(1) TCGA-ZJ-AB0H-01 19 20735302 20735302 C G ZNF737 Missense_Mutation p.E69Q 0.10 deleterious(0.03) possibly_damaging(0.813) TCGA-ZJ-AB0H-01 19 39086299 39086299 G A MAP4K1 Silent p.T750T 0.14 TCGA-ZJ-AB0H-01 19 4548279 4548279 C T SEMA6B Missense_Mutation p.D484N 0.18 tolerated(0.32) benign(0.161) TCGA-ZJ-AB0H-01 19 45998239 45998239 C T RTN2 Missense_Mutation p.R35Q 0.14 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-ZJ-AB0H-01 19 56423967 56423967 C G NLRP13 Missense_Mutation p.E406Q 0.15 tolerated(0.46) benign(0.058) TCGA-ZJ-AB0H-01 19 56544050 56544050 C T NLRP5 Missense_Mutation p.R784W 0.24 deleterious(0) possibly_damaging(0.794) TCGA-ZJ-AB0H-01 1 12027073 12027073 C T PLOD1 Silent p.I560I 0.13 TCGA-ZJ-AB0H-01 1 152324233 152324233 G C FLG2 Missense_Mutation p.S2010C 0.11 possibly_damaging(0.827) TCGA-ZJ-AB0H-01 1 152326933 152326933 C A FLG2 Missense_Mutation p.G1110V 0.18 unknown(0) TCGA-ZJ-AB0H-01 1 154930481 154930481 G C PYGO2 3'UTR 0.17 TCGA-ZJ-AB0H-01 1 155206157 155206157 C T GBA Missense_Mutation p.R368H 0.48 tolerated(0.53) benign(0.002) TCGA-ZJ-AB0H-01 1 156045258 156045258 T C MEX3A 3'UTR 0.77 TCGA-ZJ-AB0H-01 1 1606967 1606967 G A SLC35E2B Missense_Mutation p.T174M 0.15 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AB0H-01 1 16375359 16375359 C T CLCNKB Intron 0.22 TCGA-ZJ-AB0H-01 1 169700987 169700987 T C SELE Missense_Mutation p.K173R 0.16 tolerated(0.53) benign(0.003) TCGA-ZJ-AB0H-01 1 181059838 181059838 G C IER5 3'UTR 0.14 TCGA-ZJ-AB0H-01 1 185114657 185114657 G A TRMT1L Missense_Mutation p.S190L 0.08 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-ZJ-AB0H-01 1 185984479 185984479 C G HMCN1 Missense_Mutation p.R1607G 0.16 probably_damaging(0.997) TCGA-ZJ-AB0H-01 1 196227338 196227338 G A KCNT2 Missense_Mutation p.S1066F 0.10 deleterious(0) possibly_damaging(0.794) TCGA-ZJ-AB0H-01 1 200376063 200376063 G A ZNF281 3'UTR 0.08 TCGA-ZJ-AB0H-01 1 20880913 20880913 C G FAM43B 3'UTR 0.16 TCGA-ZJ-AB0H-01 1 22214472 22214472 C T HSPG2 Missense_Mutation p.R221Q 0.17 benign(0.037) TCGA-ZJ-AB0H-01 1 222802003 222802003 G C MIA3 Missense_Mutation p.D481H 0.07 tolerated(0.11) benign(0.017) TCGA-ZJ-AB0H-01 1 223176989 223176989 C G DISP1 Silent p.S750S 0.12 TCGA-ZJ-AB0H-01 1 223842061 223842061 G A CAPN8 Missense_Mutation p.T93M 0.10 possibly_damaging(0.876) TCGA-ZJ-AB0H-01 1 22418373 22418373 C T CDC42 3'UTR 0.12 TCGA-ZJ-AB0H-01 1 31501656 31501656 C T PUM1 Missense_Mutation p.R140K 0.14 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-ZJ-AB0H-01 1 63788790 63788790 G C FOXD3 Missense_Mutation p.E21Q 0.20 deleterious(0) possibly_damaging(0.557) TCGA-ZJ-AB0H-01 1 92649664 92649664 C T KIAA1107 Missense_Mutation p.P1281L 0.16 deleterious(0) probably_damaging(1) TCGA-ZJ-AB0H-01 20 43384834 43384834 G A RIMS4 Missense_Mutation p.R252W 0.30 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-ZJ-AB0H-01 21 35254731 35254731 C G ITSN1 Nonsense_Mutation p.S1509* 0.12 TCGA-ZJ-AB0H-01 21 37710096 37710096 C T MORC3 Silent p.F104F 0.25 TCGA-ZJ-AB0H-01 21 44834802 44834802 G T SIK1 3'UTR 0.14 TCGA-ZJ-AB0H-01 21 45170412 45170412 G C PDXK Missense_Mutation p.E166Q 0.15 tolerated(0.19) benign(0.018) TCGA-ZJ-AB0H-01 22 18246960 18246960 C G BID Intron 0.81 TCGA-ZJ-AB0H-01 22 25158338 25158338 G A PIWIL3 Intron 0.14 TCGA-ZJ-AB0H-01 22 29736773 29736773 C T AP1B1 Missense_Mutation p.A624T 0.15 tolerated(0.61) benign(0.001) TCGA-ZJ-AB0H-01 22 50943308 50943308 G A LMF2 Missense_Mutation p.L454F 0.38 deleterious(0) probably_damaging(0.996) TCGA-ZJ-AB0H-01 22 50988927 50988927 C G KLHDC7B 3'UTR 0.29 TCGA-ZJ-AB0H-01 2 100006228 100006228 T C EIF5B Silent p.A773A 0.12 TCGA-ZJ-AB0H-01 2 128364981 128364981 C T MYO7B Silent p.F875F 0.13 TCGA-ZJ-AB0H-01 2 167760330 167760330 C T XIRP2 Missense_Mutation p.A113V 0.14 probably_damaging(0.972) TCGA-ZJ-AB0H-01 2 179400196 179400196 C A TTN Missense_Mutation p.D33716Y 0.15 TCGA-ZJ-AB0H-01 2 190428446 190428446 C T SLC40A1 Silent p.K422K 0.16 TCGA-ZJ-AB0H-01 2 198650017 198650017 A C BOLL Intron 0.37 TCGA-ZJ-AB0H-01 2 202259538 202259538 G T TRAK2 Silent p.R320R 0.12 TCGA-ZJ-AB0H-01 2 230450665 230450665 G A DNER Silent p.L252L 0.09 TCGA-ZJ-AB0H-01 2 233655566 233655566 G A GIGYF2 Missense_Mutation p.E313K 0.12 possibly_damaging(0.9) TCGA-ZJ-AB0H-01 2 27685629 27685629 C T IFT172 Missense_Mutation p.R685Q 0.10 tolerated(0.43) benign(0.031) TCGA-ZJ-AB0H-01 2 45778422 45778422 C T SRBD1 Splice_Site p.X506_splice 0.16 TCGA-ZJ-AB0H-01 2 69201745 69201745 G C GKN1 5'UTR 0.06 TCGA-ZJ-AB0H-01 2 71416986 71416986 C T PAIP2B Missense_Mutation p.E102K 0.18 tolerated(0.1) benign(0.016) TCGA-ZJ-AB0H-01 2 85032873 85032873 G A DNAH6 Missense_Mutation p.E3856K 0.07 tolerated(0.08) possibly_damaging(0.611) TCGA-ZJ-AB0H-01 3 108698508 108698508 G C MORC1 Silent p.L777L 0.07 TCGA-ZJ-AB0H-01 3 113346942 113346942 G A SIDT1 3'UTR 0.07 TCGA-ZJ-AB0H-01 3 114057876 114057876 C T ZBTB20 Missense_Mutation p.M734I 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.708) TCGA-ZJ-AB0H-01 3 130686082 130686082 G C ATP2C1 Missense_Mutation p.E440Q 0.10 tolerated(0.13) benign(0.141) TCGA-ZJ-AB0H-01 3 135822215 135822215 G C PPP2R3A Missense_Mutation p.Q1073H 0.22 deleterious(0) probably_damaging(0.983) TCGA-ZJ-AB0H-01 3 141820599 141820600 TG - TFDP2 5'UTR 0.10 TCGA-ZJ-AB0H-01 3 154146523 154146523 C T GPR149 Silent p.G294G 0.62 TCGA-ZJ-AB0H-01 3 167621189 167621189 C G RP11-298O21.5 RNA 0.16 TCGA-ZJ-AB0H-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.32 deleterious(0.04) probably_damaging(0.96) TCGA-ZJ-AB0H-01 3 183873369 183873369 C A DVL3 5'UTR 0.14 TCGA-ZJ-AB0H-01 3 195511287 195511287 G A MUC4 Silent p.T2388T 0.05 TCGA-ZJ-AB0H-01 3 47084111 47084111 G C SETD2 Missense_Mutation p.P2393R 0.11 deleterious(0) possibly_damaging(0.479) TCGA-ZJ-AB0H-01 4 100263983 100263983 G A ADH1C Missense_Mutation p.S266L 0.15 probably_damaging(1) TCGA-ZJ-AB0H-01 4 110932544 110932544 T A EGF Missense_Mutation p.L1186Q 0.22 tolerated_low_confidence(0.31) benign(0.004) TCGA-ZJ-AB0H-01 4 144457722 144457722 C G SMARCA5 Silent p.L462L 0.15 TCGA-ZJ-AB0H-01 4 151502522 151502522 T G LRBA Intron 0.10 TCGA-ZJ-AB0H-01 4 56277981 56277981 C T TMEM165 Silent p.A136A 0.21 TCGA-ZJ-AB0H-01 4 57340446 57340446 G A SRP72 Missense_Mutation p.E167K 0.10 tolerated(0.15) benign(0.059) TCGA-ZJ-AB0H-01 4 65275046 65275046 G A TECRL Silent p.L8L 0.08 TCGA-ZJ-AB0H-01 4 6863918 6863918 G A KIAA0232 Silent p.G603G 0.37 TCGA-ZJ-AB0H-01 4 70346495 70346495 C T UGT2B4 Missense_Mutation p.D482N 0.05 tolerated(0.51) benign(0.05) TCGA-ZJ-AB0H-01 4 88901214 88901214 C T SPP1 Missense_Mutation p.P37L 0.14 tolerated(0.08) possibly_damaging(0.908) TCGA-ZJ-AB0H-01 5 148689604 148689604 G A AFAP1L1 Missense_Mutation p.R278Q 0.16 deleterious(0) possibly_damaging(0.798) TCGA-ZJ-AB0H-01 5 24537611 24537611 C G CDH10 Missense_Mutation p.R135T 0.08 tolerated(0.56) probably_damaging(0.943) TCGA-ZJ-AB0H-01 5 50689569 50689569 G C ISL1 3'UTR 0.10 TCGA-ZJ-AB0H-01 5 78293807 78293807 G C DMGDH 3'UTR 0.25 TCGA-ZJ-AB0H-01 5 79032119 79032119 G A CMYA5 Missense_Mutation p.D2511N 0.10 benign(0) TCGA-ZJ-AB0H-01 5 96253297 96253297 G A ERAP2 Missense_Mutation p.M957I 0.15 tolerated(0.12) benign(0) TCGA-ZJ-AB0H-01 6 101847044 101847044 C T GRIK2 5'UTR 0.26 TCGA-ZJ-AB0H-01 6 144508736 144508736 G A STX11 3'UTR 0.21 TCGA-ZJ-AB0H-01 6 155485666 155485666 G A TIAM2 Missense_Mutation p.A716T 0.32 tolerated(0.1) benign(0.009) TCGA-ZJ-AB0H-01 6 27841084 27841084 C G HIST1H4L Missense_Mutation p.D69H 0.14 deleterious(0.02) possibly_damaging(0.898) TCGA-ZJ-AB0H-01 6 30688236 30688236 C A TUBB 5'UTR 0.14 TCGA-ZJ-AB0H-01 6 75898237 75898237 C G COL12A1 Missense_Mutation p.D280H 0.27 probably_damaging(1) TCGA-ZJ-AB0H-01 6 86347038 86347038 T - SYNCRIP Frame_Shift_Del p.T138Pfs*56 0.24 TCGA-ZJ-AB0H-01 7 112413001 112413001 C T TMEM168 Missense_Mutation p.E461K 0.12 deleterious(0.01) possibly_damaging(0.831) TCGA-ZJ-AB0H-01 7 11676273 11676273 G A THSD7A Missense_Mutation p.A169V 0.27 tolerated(0.83) benign(0.011) TCGA-ZJ-AB0H-01 7 15601392 15601392 C T AGMO Missense_Mutation p.E27K 0.11 deleterious(0.03) possibly_damaging(0.677) TCGA-ZJ-AB0H-01 7 38398389 38398389 C A TRGV3 Silent p.T26T 0.06 TCGA-ZJ-AB0H-01 7 51287509 51287509 C T COBL Silent p.L58L 0.18 TCGA-ZJ-AB0H-01 7 74103514 74103514 G A GTF2I Missense_Mutation p.E18K 0.26 deleterious(0.01) possibly_damaging(0.725) TCGA-ZJ-AB0H-01 7 74202386 74202386 G A NCF1 Missense_Mutation p.V287M 0.11 tolerated(0.1) benign(0.016) TCGA-ZJ-AB0H-01 7 99017025 99017025 C T BUD31 Silent p.I132I 0.17 TCGA-ZJ-AB0H-01 8 144408459 144408459 G A TOP1MT Missense_Mutation p.T139M 0.24 deleterious(0.03) probably_damaging(0.916) TCGA-ZJ-AB0H-01 8 21608194 21608194 G A GFRA2 Missense_Mutation p.R234W 0.52 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AB0H-01 8 39534972 39534972 C T ADAM18 Silent p.A516A 0.43 TCGA-ZJ-AB0H-01 8 91968838 91968838 G A NECAB1 3'UTR 0.22 TCGA-ZJ-AB0H-01 9 109688992 109688992 G A ZNF462 Silent p.T933T 0.13 TCGA-ZJ-AB0H-01 9 113128329 113128329 C T SVEP1 3'UTR 0.16 TCGA-ZJ-AB0H-01 9 138713052 138713052 C T CAMSAP1 Missense_Mutation p.S1152N 0.21 tolerated(0.44) benign(0.002) TCGA-ZJ-AB0H-01 9 18777208 18777208 C G ADAMTSL1 Missense_Mutation p.T994S 0.22 tolerated(0.85) benign(0.001) TCGA-ZJ-AB0H-01 9 34551761 34551761 G A CNTFR 3'UTR 0.12 TCGA-ZJ-AB0H-01 9 8319960 8319960 G A PTPRD Silent p.G1847G 0.10 TCGA-ZJ-AB0H-01 9 84608577 84608577 G A SPATA31D1 Silent p.L1064L 0.14 TCGA-ZJ-AB0H-01 X 100668477 100668477 C T HNRNPH2 3'UTR 0.14 TCGA-ZJ-AB0H-01 X 101152874 101152874 G A ZMAT1 Nonsense_Mutation p.Q158* 0.26 TCGA-ZJ-AB0H-01 X 105450062 105450062 G T MUM1L1 Missense_Mutation p.D213Y 0.25 deleterious(0.01) possibly_damaging(0.808) TCGA-ZJ-AB0H-01 X 107979508 107979508 C A IRS4 Missense_Mutation p.A23S 0.27 tolerated_low_confidence(0.12) benign(0.112) TCGA-ZJ-AB0H-01 X 115303662 115303662 T C AGTR2 Silent p.H43H 0.11 TCGA-ZJ-AB0H-01 X 118722870 118722870 C A NKRF 3'UTR 0.13 TCGA-ZJ-AB0H-01 X 122338274 122338274 G A GRIA3 Intron 0.11 TCGA-ZJ-AB0H-01 X 135292910 135292910 G A FHL1 3'UTR 0.12 TCGA-ZJ-AB0H-01 X 154156922 154156922 G A F8 Nonsense_Mutation p.R1715* 0.22 TCGA-ZJ-AB0H-01 X 15591545 15591545 T C ACE2 Missense_Mutation p.T496A 0.03 tolerated(0.24) benign(0.007) TCGA-ZJ-AB0H-01 X 21772364 21772364 C A SMPX Missense_Mutation p.Q15H 0.14 deleterious_low_confidence(0.04) benign(0.002) TCGA-ZJ-AB0H-01 X 30237726 30237726 C T MAGEB2 3'UTR 0.22 TCGA-ZJ-AB0H-01 X 30260404 30260404 C G MAGEB4 Missense_Mutation p.S51C 0.35 tolerated(0.07) probably_damaging(0.971) TCGA-ZJ-AB0H-01 X 44922690 44922690 G A KDM6A Silent p.Q517Q 0.21 TCGA-ZJ-AB0H-01 X 47774464 47774464 A T ZNF81 Missense_Mutation p.K140M 0.25 deleterious(0.04) possibly_damaging(0.514) TCGA-ZJ-AB0H-01 X 54223302 54223302 C T WNK3 3'UTR 0.13 TCGA-ZJ-AB0H-01 X 54223672 54223672 C G WNK3 3'UTR 0.20 TCGA-ZJ-AB0I-01 10 1206509 1206509 C T LINC00200 RNA 0.21 TCGA-ZJ-AB0I-01 10 127431638 127431638 G T EDRF1 Missense_Mutation p.A795S 0.39 tolerated(0.21) possibly_damaging(0.817) TCGA-ZJ-AB0I-01 10 128191363 128191363 G A C10orf90 Intron 0.37 TCGA-ZJ-AB0I-01 10 5948462 5948462 A G FBXO18 Missense_Mutation p.E258G 0.32 tolerated(0.28) benign(0.36) TCGA-ZJ-AB0I-01 10 69835006 69835006 G C HERC4 5'UTR 0.36 TCGA-ZJ-AB0I-01 10 72360447 72360447 C A PRF1 Missense_Mutation p.G71V 0.37 deleterious(0) possibly_damaging(0.905) TCGA-ZJ-AB0I-01 10 89530796 89530796 G A ATAD1 Silent p.V231V 0.50 TCGA-ZJ-AB0I-01 11 113672243 113672243 C G USP28 Missense_Mutation p.R1007T 0.32 deleterious(0) probably_damaging(0.947) TCGA-ZJ-AB0I-01 11 123814285 123814285 C A OR6T1 Silent p.T87T 0.50 TCGA-ZJ-AB0I-01 11 1272365 1272365 C A MUC5B Missense_Mutation p.P4752H 0.36 unknown(0) TCGA-ZJ-AB0I-01 11 22770731 22770731 C T GAS2 Missense_Mutation p.S180F 0.31 tolerated(0.09) benign(0.008) TCGA-ZJ-AB0I-01 11 55681278 55681278 G A OR5W2 Missense_Mutation p.R261W 0.36 deleterious(0.02) possibly_damaging(0.519) TCGA-ZJ-AB0I-01 11 58723426 58723426 C A GLYATL1 Missense_Mutation p.Q310K 0.31 tolerated(0.77) benign(0.076) TCGA-ZJ-AB0I-01 11 62288944 62288944 C T AHNAK Silent p.K4315K 0.34 TCGA-ZJ-AB0I-01 11 93471304 93471304 C T TAF1D Missense_Mutation p.A144T 0.41 deleterious(0.03) benign(0.164) TCGA-ZJ-AB0I-01 12 111736364 111736364 A C CUX2 Missense_Mutation p.I242L 0.48 tolerated(0.09) benign(0.17) TCGA-ZJ-AB0I-01 12 112308949 112308949 A C MAPKAPK5 Missense_Mutation p.T182P 0.31 deleterious(0) probably_damaging(0.997) TCGA-ZJ-AB0I-01 12 115108860 115108860 C T TBX3 3'UTR 0.56 TCGA-ZJ-AB0I-01 12 124158331 124158331 A G TCTN2 Missense_Mutation p.N146S 0.51 tolerated(0.08) benign(0.049) TCGA-ZJ-AB0I-01 12 13717273 13717273 C G GRIN2B Missense_Mutation p.E967Q 0.47 tolerated(0.61) probably_damaging(0.999) TCGA-ZJ-AB0I-01 12 15261424 15261424 A T RERG 3'UTR 0.50 TCGA-ZJ-AB0I-01 12 50232726 50232726 C G BCDIN3D Missense_Mutation p.E103Q 0.54 tolerated(0.06) benign(0.327) TCGA-ZJ-AB0I-01 12 52652116 52652116 G T KRT121P RNA 0.33 TCGA-ZJ-AB0I-01 12 56997376 56997376 A G BAZ2A Silent p.S1051S 0.46 TCGA-ZJ-AB0I-01 12 8976478 8976478 G A A2ML1 Missense_Mutation p.V137M 0.25 deleterious(0) probably_damaging(0.992) TCGA-ZJ-AB0I-01 13 103387216 103387216 T A CCDC168 Silent p.I648I 0.31 TCGA-ZJ-AB0I-01 14 23352447 23352461 GCTGCGAGCTGCTGG - REM2 5'UTR 0.33 TCGA-ZJ-AB0I-01 14 32545179 32545222 TATGTTTAAGGCAGTATAATAAAAGCCAGGTGGACGACAGTTCC - ARHGAP5 5'Flank 0.40 TCGA-ZJ-AB0I-01 15 23692352 23692352 G T GOLGA6L2 5'UTR 0.42 TCGA-ZJ-AB0I-01 15 39910298 39910298 C T FSIP1 Missense_Mutation p.R446K 0.31 tolerated(0.48) benign(0.015) TCGA-ZJ-AB0I-01 15 40627857 40627857 G C C15orf52 Silent p.A369A 0.27 TCGA-ZJ-AB0I-01 15 42730824 42730824 G A ZNF106 Missense_Mutation p.S1506L 0.57 deleterious(0.05) benign(0.065) TCGA-ZJ-AB0I-01 15 52100663 52100663 G T TMOD2 3'UTR 0.41 TCGA-ZJ-AB0I-01 15 65621338 65621338 G T IGDCC3 Missense_Mutation p.P785H 0.46 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-ZJ-AB0I-01 15 89873311 89873311 C A POLG Splice_Site p.X285_splice 0.71 TCGA-ZJ-AB0I-01 15 99506262 99506262 G C IGF1R 3'UTR 0.05 TCGA-ZJ-AB0I-01 16 15857734 15857734 C T MYH11 Missense_Mutation p.V357I 0.21 benign(0.153) TCGA-ZJ-AB0I-01 16 34739688 34739688 G T RP11-80F22.15 RNA 0.34 TCGA-ZJ-AB0I-01 16 5046428 5046428 T C SEC14L5 Silent p.L249L 0.29 TCGA-ZJ-AB0I-01 16 56660942 56660942 T C MT1E 3'UTR 0.71 TCGA-ZJ-AB0I-01 16 70917893 70917893 G C HYDIN Missense_Mutation p.I3303M 0.18 possibly_damaging(0.844) TCGA-ZJ-AB0I-01 17 16593816 16593816 C A CCDC144A Missense_Mutation p.D34E 0.39 deleterious_low_confidence(0) benign(0.417) TCGA-ZJ-AB0I-01 17 17714455 17714455 C G RAI1 3'UTR 0.40 TCGA-ZJ-AB0I-01 17 30921577 30921577 G C MYO1D Intron 0.37 TCGA-ZJ-AB0I-01 17 41244011 41244020 TTTGCTAAAA - BRCA1 Frame_Shift_Del p.F1177Afs*30 0.48 TCGA-ZJ-AB0I-01 17 5086569 5086569 C A ZNF594 Missense_Mutation p.C328F 0.41 deleterious(0) possibly_damaging(0.82) TCGA-ZJ-AB0I-01 17 61473170 61473170 G T TANC2 Missense_Mutation p.V966F 0.34 deleterious(0) probably_damaging(0.985) TCGA-ZJ-AB0I-01 18 265514 265514 G A THOC1 Missense_Mutation p.A24V 0.23 deleterious(0.01) benign(0.148) TCGA-ZJ-AB0I-01 18 77895132 77895132 T A ADNP2 Silent p.I612I 0.36 TCGA-ZJ-AB0I-01 19 1221989 1221989 C T STK11 Nonsense_Mutation p.Q302* 0.78 TCGA-ZJ-AB0I-01 19 1827920 1827920 C G REXO1 Missense_Mutation p.E290Q 0.76 deleterious(0.03) benign(0.009) TCGA-ZJ-AB0I-01 19 22157536 22157536 C T ZNF208 Silent p.L100L 0.28 TCGA-ZJ-AB0I-01 19 36523226 36523226 G T CLIP3 Missense_Mutation p.P12T 0.36 deleterious_low_confidence(0) unknown(0) TCGA-ZJ-AB0I-01 19 55832429 55832429 G A TMEM150B 5'UTR 0.72 TCGA-ZJ-AB0I-01 19 9084503 9084503 C A MUC16 Missense_Mutation p.D2438Y 0.90 unknown(0) TCGA-ZJ-AB0I-01 1 10339176 10339176 A T KIF1B Intron 0.23 TCGA-ZJ-AB0I-01 1 11141203 11141203 C T EXOSC10 Missense_Mutation p.R458H 0.35 tolerated(0.1) benign(0.243) TCGA-ZJ-AB0I-01 1 1118319 1118319 G A TTLL10 Missense_Mutation p.R327Q 0.06 tolerated(0.07) possibly_damaging(0.473) TCGA-ZJ-AB0I-01 1 117131434 117131434 G A IGSF3 Silent p.V794V 0.38 TCGA-ZJ-AB0I-01 1 117131449 117131449 G A IGSF3 Silent p.V789V 0.32 TCGA-ZJ-AB0I-01 1 11856299 11856299 G C MTHFR Missense_Mutation p.I248M 0.38 deleterious(0) probably_damaging(1) TCGA-ZJ-AB0I-01 1 153309753 153309753 C T PGLYRP4 Missense_Mutation p.A283T 0.15 tolerated(0.61) benign(0.183) TCGA-ZJ-AB0I-01 1 159906611 159906611 C T IGSF9 Missense_Mutation p.S163N 0.71 tolerated(1) benign(0.006) TCGA-ZJ-AB0I-01 1 160342591 160342591 A G NHLH1 3'UTR 0.53 TCGA-ZJ-AB0I-01 1 166039770 166039770 C G FAM78B Missense_Mutation p.R165T 0.23 deleterious(0) probably_damaging(0.99) TCGA-ZJ-AB0I-01 1 1663695 1663695 A G SLC35E2 3'UTR 0.40 TCGA-ZJ-AB0I-01 1 180062004 180062004 A T CEP350 Missense_Mutation p.K2255I 0.60 possibly_damaging(0.841) TCGA-ZJ-AB0I-01 1 183515149 183515149 C A SMG7 Missense_Mutation p.Q761K 0.60 deleterious_low_confidence(0) benign(0.159) TCGA-ZJ-AB0I-01 1 203186952 203186953 - AGACCATGGCCCCGCCCAGTCCCT CHIT1 In_Frame_Ins p.V357_W358insGTGRGHGL 0.09 TCGA-ZJ-AB0I-01 1 205238694 205238704 AGGAGGCAGCC - TMCC2 Frame_Shift_Del p.E455Afs*19 0.35 TCGA-ZJ-AB0I-01 1 20827823 20827823 C T MUL1 Missense_Mutation p.R140Q 0.38 deleterious(0.01) probably_damaging(1) TCGA-ZJ-AB0I-01 1 216019264 216019264 T C USH2A Missense_Mutation p.H2986R 0.43 benign(0.102) TCGA-ZJ-AB0I-01 1 247463983 247463983 G A ZNF496 Silent p.H534H 0.87 TCGA-ZJ-AB0I-01 1 45252285 45252285 A C BEST4 Missense_Mutation p.S111A 0.55 tolerated(0.14) benign(0.095) TCGA-ZJ-AB0I-01 1 47110880 47110880 G C ATPAF1 Missense_Mutation p.Q236E 0.40 deleterious(0.03) possibly_damaging(0.508) TCGA-ZJ-AB0I-01 1 47264932 47264932 A T CYP4B1 Missense_Mutation p.E60V 0.46 tolerated(0.07) possibly_damaging(0.687) TCGA-ZJ-AB0I-01 20 17479549 17479549 T C BFSP1 Missense_Mutation p.D291G 0.38 deleterious(0.03) benign(0.294) TCGA-ZJ-AB0I-01 20 31040165 31040165 C G C20orf112 Missense_Mutation p.A322P 0.50 deleterious(0) benign(0.161) TCGA-ZJ-AB0I-01 20 35800456 35800456 C G MROH8 Missense_Mutation p.L155F 0.42 tolerated_low_confidence(0.35) possibly_damaging(0.653) TCGA-ZJ-AB0I-01 21 46078007 46078007 C T KRTAP12-3 Silent p.P37P 0.35 TCGA-ZJ-AB0I-01 22 17602898 17602898 G C AC006946.15 Missense_Mutation p.C27S 0.41 benign(0.3) TCGA-ZJ-AB0I-01 22 25007196 25007196 T G GGT1 Missense_Mutation p.C50G 0.44 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AB0I-01 22 39886493 39886493 G A MGAT3 3'UTR 0.47 TCGA-ZJ-AB0I-01 2 152403950 152403950 G C NEB Missense_Mutation p.T6787S 0.26 benign(0.114) TCGA-ZJ-AB0I-01 2 15415858 15415858 G C NBAS Missense_Mutation p.S1825C 0.26 deleterious(0.01) possibly_damaging(0.711) TCGA-ZJ-AB0I-01 2 163136527 163136527 G C IFIH1 Silent p.A540A 0.37 TCGA-ZJ-AB0I-01 2 179600413 179600413 C G TTN Silent p.T4920T 0.45 TCGA-ZJ-AB0I-01 2 207171809 207171809 C G ZDBF2 Missense_Mutation p.Q853E 0.60 deleterious(0.05) benign(0.184) TCGA-ZJ-AB0I-01 2 235951176 235951176 C T SH3BP4 Missense_Mutation p.T588M 0.82 deleterious(0.02) probably_damaging(0.991) TCGA-ZJ-AB0I-01 2 242142787 242142787 C G ANO7 Missense_Mutation p.R309G 0.92 tolerated(0.44) benign(0.001) TCGA-ZJ-AB0I-01 2 44021711 44021711 G C DYNC2LI1 Missense_Mutation p.G146R 0.57 tolerated(0.41) benign(0.035) TCGA-ZJ-AB0I-01 2 61711182 61711182 T C XPO1 Missense_Mutation p.N856S 0.32 tolerated(0.06) benign(0.023) TCGA-ZJ-AB0I-01 2 73718454 73718454 T C ALMS1 Missense_Mutation p.L3122P 0.30 benign(0.084) TCGA-ZJ-AB0I-01 2 88478321 88478321 G C THNSL2 Missense_Mutation p.E197D 0.31 tolerated(0.75) benign(0.009) TCGA-ZJ-AB0I-01 3 128856031 128856031 G A ISY1 Missense_Mutation p.R143W 0.37 deleterious(0.02) benign(0.001) TCGA-ZJ-AB0I-01 3 129303038 129303038 G A PLXND1 Missense_Mutation p.R690W 0.31 deleterious(0.02) benign(0.009) TCGA-ZJ-AB0I-01 3 130284184 130284184 C T COL6A6 Silent p.A336A 0.24 TCGA-ZJ-AB0I-01 3 134960134 134960134 C T EPHB1 Nonsense_Mutation p.Q831* 0.37 TCGA-ZJ-AB0I-01 3 156978790 156978790 C G VEPH1 3'UTR 0.19 TCGA-ZJ-AB0I-01 3 185363146 185363146 C G IGF2BP2 3'UTR 0.30 TCGA-ZJ-AB0I-01 3 194061770 194061770 C T CPN2 3'UTR 0.23 TCGA-ZJ-AB0I-01 3 195479270 195479270 C T MUC4 Missense_Mutation p.A5186T 0.25 benign(0.134) TCGA-ZJ-AB0I-01 3 48628894 48628894 C T COL7A1 Intron 0.77 TCGA-ZJ-AB0I-01 3 52950210 52950210 A T SFMBT1 Missense_Mutation p.V479D 0.90 deleterious(0.03) possibly_damaging(0.654) TCGA-ZJ-AB0I-01 3 65340720 65340720 A T MAGI1 3'Flank 0.67 TCGA-ZJ-AB0I-01 4 55948780 55948780 G A KDR Nonsense_Mutation p.R1229* 0.36 TCGA-ZJ-AB0I-01 4 68606401 68606401 G A GNRHR Missense_Mutation p.R262W 0.33 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AB0I-01 4 76434137 76434137 C G RCHY1 Missense_Mutation p.Q73H 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-ZJ-AB0I-01 4 78640905 78640905 A - CNOT6L 3'UTR 0.10 TCGA-ZJ-AB0I-01 5 140517428 140517428 T C PCDHB5 3'UTR 0.29 TCGA-ZJ-AB0I-01 5 141233418 141233418 G C PCDH1 3'UTR 0.35 TCGA-ZJ-AB0I-01 5 149495119 149495119 G A PDGFRB 3'UTR 0.30 TCGA-ZJ-AB0I-01 5 149637161 149637161 G C CAMK2A Missense_Mutation p.I79M 0.25 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-ZJ-AB0I-01 5 151304250 151304250 G A GLRA1 5'UTR 0.64 TCGA-ZJ-AB0I-01 5 156649957 156649957 C T ITK Missense_Mutation p.R194C 0.22 deleterious(0.05) benign(0.002) TCGA-ZJ-AB0I-01 5 41042246 41042246 G C MROH2B Nonsense_Mutation p.S634* 0.31 TCGA-ZJ-AB0I-01 5 79084920 79084920 C A CMYA5 Silent p.S3894S 0.46 TCGA-ZJ-AB0I-01 6 100895167 100895167 G A SIM1 Silent p.I325I 0.34 TCGA-ZJ-AB0I-01 6 107474739 107474751 ATACATTTCACTT - PDSS2 3'UTR 0.22 TCGA-ZJ-AB0I-01 6 33381272 33381272 C G PHF1 Missense_Mutation p.D175E 0.39 tolerated(0.79) benign(0.013) TCGA-ZJ-AB0I-01 6 99282743 99282743 G T POU3F2 5'UTR 0.33 TCGA-ZJ-AB0I-01 7 100686675 100686675 C T MUC17 Missense_Mutation p.T3993I 0.30 benign(0.003) TCGA-ZJ-AB0I-01 7 103766788 103766794 TTGGATT - ORC5 3'UTR 0.37 TCGA-ZJ-AB0I-01 7 104746088 104746088 A G KMT2E Missense_Mutation p.E800G 0.33 deleterious(0.02) benign(0.403) TCGA-ZJ-AB0I-01 7 111981040 111981040 C G ZNF277 Missense_Mutation p.H375D 0.43 deleterious(0) probably_damaging(0.942) TCGA-ZJ-AB0I-01 7 11675925 11675925 T A THSD7A Missense_Mutation p.K285M 0.50 tolerated(0.1) possibly_damaging(0.75) TCGA-ZJ-AB0I-01 7 155567312 155567312 C T RBM33 Silent p.H1145H 0.96 TCGA-ZJ-AB0I-01 7 79842063 79842063 A G GNAI1 Missense_Mutation p.D251G 0.52 deleterious(0.01) probably_damaging(0.917) TCGA-ZJ-AB0I-01 7 99054672 99054672 G A CPSF4 3'UTR 0.47 TCGA-ZJ-AB0I-01 8 117887067 117887067 C G RAD21 5'UTR 0.29 TCGA-ZJ-AB0I-01 8 126448568 126448568 A G TRIB1 Missense_Mutation p.E325G 0.23 deleterious(0) possibly_damaging(0.463) TCGA-ZJ-AB0I-01 8 28210704 28210704 G C ZNF395 Missense_Mutation p.P269A 0.37 deleterious(0) probably_damaging(0.999) TCGA-ZJ-AB0I-01 8 3889499 3889499 G C CSMD1 Missense_Mutation p.H180D 0.91 probably_damaging(0.996) TCGA-ZJ-AB0I-01 8 40388551 40388551 G A ZMAT4 3'UTR 0.82 TCGA-ZJ-AB0I-01 8 56436673 56436673 C A XKR4 Silent p.R614R 0.39 TCGA-ZJ-AB0I-01 8 57079770 57079770 C A PLAG1 Missense_Mutation p.G179W 0.41 deleterious(0) probably_damaging(0.996) TCGA-ZJ-AB0I-01 9 102627443 102627443 A T NR4A3 3'UTR 0.29 TCGA-ZJ-AB0I-01 9 130265255 130265255 G A LRSAM1 3'UTR 0.37 TCGA-ZJ-AB0I-01 9 131083901 131083901 G T TRUB2 Missense_Mutation p.P73H 0.20 deleterious(0) probably_damaging(1) TCGA-ZJ-AB0I-01 9 131123268 131123268 C T SLC27A4 3'UTR 0.41 TCGA-ZJ-AB0I-01 9 140342674 140342674 G A NSMF 3'UTR 0.35 TCGA-ZJ-AB0I-01 9 18817197 18817197 T G ADAMTSL1 Missense_Mutation p.V1299G 0.34 tolerated(0.07) possibly_damaging(0.561) TCGA-ZJ-AB0I-01 9 35057461 35057461 C T VCP Missense_Mutation p.A743T 0.24 deleterious(0.02) probably_damaging(0.933) TCGA-ZJ-AB0I-01 9 37862225 37862225 C A DCAF10 3'UTR 0.43 TCGA-ZJ-AB0I-01 9 71629038 71629039 - GCGGCGGCGGCG PRKACG 5'UTR 0.47 TCGA-ZJ-AB0I-01 9 86357465 86357465 T G GKAP1 Missense_Mutation p.K319Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-ZJ-AB0I-01 9 95575905 95575905 T A ANKRD19P RNA 0.31 TCGA-ZJ-AB0I-01 X 101908982 101908982 G T GPRASP1 Missense_Mutation p.M47I 0.32 tolerated(0.1) benign(0.022) TCGA-ZJ-AB0I-01 X 101908983 101908983 C T GPRASP1 Missense_Mutation p.P48S 0.33 tolerated(0.4) benign(0.004) TCGA-ZJ-AB0I-01 X 119660260 119660260 C G CUL4B 3'Flank 0.32 TCGA-ZJ-AB0I-01 X 134715460 134715460 A G DDX26B Missense_Mutation p.R829G 0.22 deleterious(0) probably_damaging(0.916) TCGA-ZJ-AB0I-01 X 138810836 138810836 A C ATP11C 3'UTR 0.20 TCGA-ZJ-AB0I-01 X 140984765 140984765 T C MAGEC3 Silent p.P407P 0.33 TCGA-ZJ-AB0I-01 X 151936016 151936016 C A MAGEA3 Missense_Mutation p.G51W 0.44 deleterious(0.02) probably_damaging(0.945) TCGA-ZJ-AB0I-01 X 15287942 15287942 A C ASB9 Missense_Mutation p.F19V 0.40 tolerated(0.5) benign(0.006) TCGA-ZJ-AB0I-01 X 21985333 21985333 A G SMS Silent p.L23L 0.29 TCGA-ZJ-AB0I-01 X 32563308 32563308 C T DMD Silent p.R712R 0.37 TCGA-ZJ-AB0I-01 X 48369846 48369846 C T PORCN Silent p.S100S 0.41 TCGA-ZJ-AB0I-01 X 69258569 69258569 G A EDA 3'UTR 0.32 TCGA-ZJ-AB0I-01 X 78616912 78616912 C T ITM2A Missense_Mutation p.R206H 0.37 tolerated(0.11) benign(0.003) TCGA-ZX-AA5X-01 10 118893792 118893792 C A VAX1 Silent p.P244P 0.21 TCGA-ZX-AA5X-01 10 44139989 44139989 C T ZNF32 Missense_Mutation p.G111R 0.12 deleterious(0.01) probably_damaging(0.968) TCGA-ZX-AA5X-01 10 74098043 74098043 C T DNAJB12 Silent p.L284L 0.10 TCGA-ZX-AA5X-01 10 75528652 75528652 C T SEC24C Missense_Mutation p.R756W 0.11 deleterious(0) probably_damaging(1) TCGA-ZX-AA5X-01 10 75553782 75553782 G A ZSWIM8 Missense_Mutation p.A869T 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-ZX-AA5X-01 12 107155851 107155851 A G RFX4 3'Flank 0.09 TCGA-ZX-AA5X-01 12 113306245 113306245 G A RPH3A Missense_Mutation p.R152H 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZX-AA5X-01 12 176384 176384 G A IQSEC3 Silent p.P112P 0.11 TCGA-ZX-AA5X-01 12 52680220 52680220 C T KRT81 Missense_Mutation p.R446Q 0.25 tolerated(0.37) benign(0.006) TCGA-ZX-AA5X-01 13 33639480 33639480 C G KL 3'UTR 0.25 TCGA-ZX-AA5X-01 14 23876398 23876398 G A MYH6 Missense_Mutation p.A12V 0.11 deleterious(0) possibly_damaging(0.701) TCGA-ZX-AA5X-01 14 47351247 47351247 C A MDGA2 Missense_Mutation p.A806S 0.17 tolerated(0.47) benign(0.225) TCGA-ZX-AA5X-01 14 76662274 76662274 G A GPATCH2L Missense_Mutation p.R416Q 0.19 deleterious(0) probably_damaging(0.975) TCGA-ZX-AA5X-01 14 88971705 88971705 A T PTPN21 Silent p.G153G 0.07 TCGA-ZX-AA5X-01 15 49531494 49531494 C G GALK2 Missense_Mutation p.S145C 0.32 deleterious(0) probably_damaging(1) TCGA-ZX-AA5X-01 15 64495289 64495289 G A CSNK1G1 Nonsense_Mutation p.R367* 0.16 TCGA-ZX-AA5X-01 15 73994790 73994790 C T CD276 Missense_Mutation p.R92C 0.25 deleterious(0) probably_damaging(0.993) TCGA-ZX-AA5X-01 15 74919989 74919989 G A CLK3 Missense_Mutation p.R489H 0.14 deleterious(0) probably_damaging(1) TCGA-ZX-AA5X-01 16 22335933 22335933 C T POLR3E Missense_Mutation p.P413L 0.27 deleterious(0) benign(0.212) TCGA-ZX-AA5X-01 16 28597028 28597028 G A CCDC101 Missense_Mutation p.E71K 0.18 tolerated(0.34) benign(0.043) TCGA-ZX-AA5X-01 16 88499175 88499175 G A ZNF469 Missense_Mutation p.R1738Q 0.12 benign(0.019) TCGA-ZX-AA5X-01 17 37190423 37190423 A C LRRC37A11P Intron 0.10 TCGA-ZX-AA5X-01 17 39964148 39964148 C T LEPREL4 Missense_Mutation p.R342H 0.14 deleterious(0.01) probably_damaging(0.957) TCGA-ZX-AA5X-01 17 61898422 61898424 TCA - FTSJ3 In_Frame_Del p.D647del 0.18 TCGA-ZX-AA5X-01 17 73569300 73569300 G A LLGL2 Missense_Mutation p.C889Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-ZX-AA5X-01 17 78220405 78220405 G A SLC26A11 Silent p.P417P 0.17 TCGA-ZX-AA5X-01 17 79425688 79425688 C T RP11-1055B8.7 Silent p.N1795N 0.20 TCGA-ZX-AA5X-01 17 8366662 8366664 GTT - NDEL1 Intron 0.18 TCGA-ZX-AA5X-01 18 18533708 18533708 A G ROCK1 Silent p.L1298L 0.18 TCGA-ZX-AA5X-01 18 54424335 54424335 C G WDR7 Silent p.L837L 0.20 TCGA-ZX-AA5X-01 18 5890421 5890421 C T TMEM200C Missense_Mutation p.E548K 0.14 deleterious(0.01) possibly_damaging(0.651) TCGA-ZX-AA5X-01 18 74592149 74592149 G A ZNF236 Silent p.A353A 0.20 TCGA-ZX-AA5X-01 19 1556853 1556853 G A MEX3D Missense_Mutation p.P222L 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZX-AA5X-01 19 15586884 15586884 G A PGLYRP2 Silent p.V199V 0.12 TCGA-ZX-AA5X-01 19 17326271 17326271 G A USE1 Silent p.A19A 0.12 TCGA-ZX-AA5X-01 19 19749065 19749065 G A GMIP Missense_Mutation p.S231F 0.27 deleterious(0.04) benign(0.147) TCGA-ZX-AA5X-01 19 3661948 3661948 C T PIP5K1C Missense_Mutation p.V91M 0.10 deleterious(0) probably_damaging(0.999) TCGA-ZX-AA5X-01 19 42734903 42734903 T C GSK3A 3'UTR 0.09 TCGA-ZX-AA5X-01 1 110553964 110553964 G A AHCYL1 Missense_Mutation p.E121K 0.13 tolerated(0.07) benign(0.382) TCGA-ZX-AA5X-01 1 146658736 146658736 G A FMO5 Silent p.L449L 0.12 TCGA-ZX-AA5X-01 1 161130985 161130985 G A USP21 Missense_Mutation p.M185I 0.24 tolerated_low_confidence(0.17) benign(0) TCGA-ZX-AA5X-01 1 167023548 167023548 C T GPA33 3'UTR 0.35 TCGA-ZX-AA5X-01 1 169446672 169446672 C A SLC19A2 Silent p.G176G 0.14 TCGA-ZX-AA5X-01 1 2535355 2535355 G T MMEL1 Missense_Mutation p.L337M 0.15 deleterious(0.01) possibly_damaging(0.905) TCGA-ZX-AA5X-01 1 53267812 53267812 G A ZYG11B Splice_Site p.X565_splice 0.16 TCGA-ZX-AA5X-01 1 71472985 71472985 C T PTGER3 Intron 0.21 TCGA-ZX-AA5X-01 20 20079446 20079446 C T C20orf26 Nonsense_Mutation p.R283* 0.18 TCGA-ZX-AA5X-01 20 21686412 21686412 C T PAX1 Missense_Mutation p.A21V 0.22 deleterious_low_confidence(0) benign(0.105) TCGA-ZX-AA5X-01 20 37209922 37209922 A G ADIG Missense_Mutation p.N10S 0.14 tolerated(0.14) benign(0.01) TCGA-ZX-AA5X-01 20 44641960 44641960 C T MMP9 Missense_Mutation p.T466M 0.12 deleterious(0.03) benign(0.049) TCGA-ZX-AA5X-01 20 47262401 47262401 C T PREX1 Missense_Mutation p.R1167H 0.10 deleterious(0) probably_damaging(0.999) TCGA-ZX-AA5X-01 20 48698019 48698019 C A UBE2V1 3'UTR 0.19 TCGA-ZX-AA5X-01 21 33709720 33709720 G A URB1 Silent p.S1538S 0.10 TCGA-ZX-AA5X-01 22 33712174 33712174 G A LARGE Missense_Mutation p.R450C 0.31 deleterious(0.01) possibly_damaging(0.794) TCGA-ZX-AA5X-01 22 41566429 41566429 T A EP300 Missense_Mutation p.W1436R 0.33 probably_damaging(1) TCGA-ZX-AA5X-01 22 46929704 46929704 C T CELSR1 Missense_Mutation p.G1122S 0.08 deleterious(0.02) probably_damaging(0.962) TCGA-ZX-AA5X-01 2 223919558 223919558 A - KCNE4 3'UTR 0.28 TCGA-ZX-AA5X-01 2 85922467 85922467 C A GNLY Missense_Mutation p.P26H 0.20 deleterious(0) probably_damaging(0.99) TCGA-ZX-AA5X-01 2 99977780 99977780 A G EIF5B Missense_Mutation p.D139G 0.17 unknown(0) TCGA-ZX-AA5X-01 3 183824340 183824340 G A HTR3E Silent p.Q436Q 0.15 TCGA-ZX-AA5X-01 3 25678798 25678798 G A TOP2B Missense_Mutation p.R178C 0.16 deleterious(0) probably_damaging(1) TCGA-ZX-AA5X-01 3 63594808 63594808 T C SYNPR Missense_Mutation p.I139T 0.21 deleterious(0.02) benign(0.1) TCGA-ZX-AA5X-01 3 69075206 69075206 G A TMF1 Missense_Mutation p.R934C 0.17 deleterious(0) probably_damaging(0.985) TCGA-ZX-AA5X-01 4 158281111 158281111 T C GRIA2 Missense_Mutation p.F703L 0.18 deleterious(0) probably_damaging(0.998) TCGA-ZX-AA5X-01 4 16504354 16504354 G A LDB2 Missense_Mutation p.A345V 0.17 tolerated(0.05) benign(0.048) TCGA-ZX-AA5X-01 4 56212609 56212609 C T SRD5A3 Missense_Mutation p.P36S 0.14 tolerated(0.32) probably_damaging(0.997) TCGA-ZX-AA5X-01 5 140555380 140555380 G A PCDHB7 3'UTR 0.09 TCGA-ZX-AA5X-01 5 145890622 145890622 A T TCERG1 3'UTR 0.07 TCGA-ZX-AA5X-01 5 169680133 169680133 G A LCP2 Missense_Mutation p.A412V 0.05 tolerated(0.25) benign(0.019) TCGA-ZX-AA5X-01 5 5262857 5262857 C T ADAMTS16 Missense_Mutation p.T917M 0.15 deleterious(0.02) possibly_damaging(0.721) TCGA-ZX-AA5X-01 5 55212947 55212947 A G IL31RA Silent p.%3D 0.17 TCGA-ZX-AA5X-01 6 109770894 109770894 G A MICAL1 Missense_Mutation p.P467L 0.05 deleterious(0.01) possibly_damaging(0.855) TCGA-ZX-AA5X-01 6 126319454 126319454 G A TRMT11 Missense_Mutation p.R127Q 0.14 deleterious(0.02) benign(0.016) TCGA-ZX-AA5X-01 6 31323294 31323296 AAA GAAG HLA-B Frame_Shift_Ins p.Y233Lfs*21 0.38 TCGA-ZX-AA5X-01 7 1037286 1037286 C T C7orf50 Missense_Mutation p.R187Q 0.29 deleterious(0) possibly_damaging(0.81) TCGA-ZX-AA5X-01 7 141351355 141351355 C T AGK Silent p.H359H 0.14 TCGA-ZX-AA5X-01 7 149129570 149129570 A G ZNF777 Missense_Mutation p.V598A 0.22 tolerated(1) benign(0.001) TCGA-ZX-AA5X-01 7 151253603 151253603 T A PRKAG2 3'UTR 0.13 TCGA-ZX-AA5X-01 7 153584644 153584644 T C DPP6 5'UTR 0.20 TCGA-ZX-AA5X-01 7 15470725 15470725 T C AGMO Missense_Mutation p.I140V 0.12 tolerated(0.17) benign(0.027) TCGA-ZX-AA5X-01 7 15725988 15725988 C T MEOX2 Missense_Mutation p.A14T 0.15 deleterious(0.04) benign(0.084) TCGA-ZX-AA5X-01 7 32910223 32910223 T C KBTBD2 Silent p.L202L 0.18 TCGA-ZX-AA5X-01 8 114389061 114389061 G A CSMD3 Intron 0.08 TCGA-ZX-AA5X-01 8 30704595 30704595 C T TEX15 Missense_Mutation p.E647K 0.13 tolerated(0.14) probably_damaging(0.913) TCGA-ZX-AA5X-01 8 33246802 33246802 C T FUT10 Silent p.L297L 0.24 TCGA-ZX-AA5X-01 8 52732305 52732305 G A PCMTD1 3'UTR 0.16 TCGA-ZX-AA5X-01 9 140167262 140167262 C T NELFB Missense_Mutation p.S542F 0.10 deleterious(0.01) benign(0.225) TCGA-ZX-AA5X-01 9 32543903 32543903 G A TOPORS Missense_Mutation p.P207L 0.13 deleterious(0.05) possibly_damaging(0.459) TCGA-ZX-AA5X-01 9 72914973 72914973 C T SMC5 Missense_Mutation p.H441Y 0.16 deleterious(0) benign(0.154) TCGA-ZX-AA5X-01 9 73477937 73477937 G A TRPM3 Nonsense_Mutation p.R117* 0.15 TCGA-ZX-AA5X-01 X 115590309 115590309 A C SLC6A14 3'UTR 0.09 TCGA-ZX-AA5X-01 X 119512613 119512613 C T ATP1B4 Silent p.Y299Y 0.13 TCGA-ZX-AA5X-01 X 122829875 122829875 T G THOC2 Missense_Mutation p.L199F 0.10 deleterious(0) probably_damaging(0.999) TCGA-ZX-AA5X-01 X 129498779 129498779 G T SLC25A14 Intron 0.21 TCGA-ZX-AA5X-01 X 137714160 137714160 C T FGF13 3'Flank 0.04 TCGA-ZX-AA5X-01 X 73044379 73044379 C T XIST RNA 0.10 TCGA-ZX-AA5X-01 X 99925883 99925883 G A SRPX2 Missense_Mutation p.E433K 0.10 tolerated(0.37) benign(0.038)