sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-3X-AAV9-01 10 116734973 116734973 G A TRUB1 Nonsense_Mutation p.W295* 0.14 TCGA-3X-AAV9-01 10 35858771 35858771 C T CCNY 3'UTR 0.12 TCGA-3X-AAV9-01 10 73956736 73956736 G A ASCC1 Nonsense_Mutation p.Q136* 0.09 TCGA-3X-AAV9-01 11 65373425 65373425 C G MAP3K11 Missense_Mutation p.Q577H 0.07 tolerated(0.12) probably_damaging(0.948) TCGA-3X-AAV9-01 12 22089573 22089573 T C ABCC9 Silent p.S12S 0.10 TCGA-3X-AAV9-01 12 52284827 52284827 C T ANKRD33 Missense_Mutation p.S366F 0.16 deleterious(0.05) possibly_damaging(0.461) TCGA-3X-AAV9-01 12 73015434 73015434 A G TRHDE Missense_Mutation p.R815G 0.14 deleterious(0.01) possibly_damaging(0.901) TCGA-3X-AAV9-01 13 114077008 114077008 T C ADPRHL1 3'UTR 0.06 TCGA-3X-AAV9-01 13 36220028 36220028 G C NBEA Intron 0.08 TCGA-3X-AAV9-01 13 43930059 43930059 C T ENOX1 Silent p.L273L 0.12 TCGA-3X-AAV9-01 14 57269033 57269033 T A OTX2 Missense_Mutation p.Q105L 0.10 deleterious(0.01) benign(0.051) TCGA-3X-AAV9-01 14 60763234 60763235 - G PPM1A 3'Flank 0.11 TCGA-3X-AAV9-01 14 73140954 73140954 G A DPF3 Missense_Mutation p.R289C 0.09 deleterious(0.03) probably_damaging(0.942) TCGA-3X-AAV9-01 14 77810058 77810058 G A TMED8 Silent p.L146L 0.11 TCGA-3X-AAV9-01 15 85401487 85401487 G C ALPK3 Missense_Mutation p.R1375T 0.08 deleterious(0.01) possibly_damaging(0.848) TCGA-3X-AAV9-01 16 71015307 71015307 G A HYDIN Silent p.P1499P 0.12 TCGA-3X-AAV9-01 16 77353780 77353780 G A ADAMTS18 Missense_Mutation p.A833V 0.08 deleterious(0) benign(0.344) TCGA-3X-AAV9-01 17 57247159 57247159 G A PRR11 Missense_Mutation p.E16K 0.07 tolerated_low_confidence(1) unknown(0) TCGA-3X-AAV9-01 17 62533848 62533848 C G CEP95 Missense_Mutation p.S806C 0.08 deleterious(0.02) benign(0.015) TCGA-3X-AAV9-01 17 7357773 7357773 T C CHRNB1 Silent p.S326S 0.11 TCGA-3X-AAV9-01 18 18608854 18608854 G C ROCK1 Missense_Mutation p.T365S 0.05 tolerated(0.15) benign(0.274) TCGA-3X-AAV9-01 19 11591444 11591444 C T ELAVL3 5'UTR 0.04 TCGA-3X-AAV9-01 19 22157034 22157034 G A ZNF208 Nonsense_Mutation p.Q268* 0.10 TCGA-3X-AAV9-01 19 41183174 41183174 C T NUMBL Silent p.G231G 0.08 TCGA-3X-AAV9-01 19 48967866 48967866 C T KCNJ14 Silent p.F381F 0.23 TCGA-3X-AAV9-01 19 52852438 52852438 G A ZNF610 Missense_Mutation p.E5K 0.15 deleterious(0.03) benign(0.112) TCGA-3X-AAV9-01 19 5784655 5784655 G A PRR22 Missense_Mutation p.P6L 0.10 tolerated(0.12) benign(0.063) TCGA-3X-AAV9-01 1 156901798 156901798 C T LRRC71 Missense_Mutation p.L474F 0.10 deleterious(0) probably_damaging(0.999) TCGA-3X-AAV9-01 1 214557314 214557314 G A PTPN14 Silent p.L628L 0.21 TCGA-3X-AAV9-01 1 248458309 248458309 G A OR2T12 Missense_Mutation p.S191L 0.14 tolerated(0.08) benign(0.029) TCGA-3X-AAV9-01 1 63018485 63018485 C T DOCK7 Missense_Mutation p.R895Q 0.13 deleterious(0.04) benign(0.062) TCGA-3X-AAV9-01 1 66798045 66798045 C A PDE4B Intron 0.11 TCGA-3X-AAV9-01 20 6759798 6759798 C A BMP2 3'UTR 0.16 TCGA-3X-AAV9-01 22 38323501 38323501 G C MICALL1 Missense_Mutation p.E517Q 0.08 deleterious(0.01) benign(0.181) TCGA-3X-AAV9-01 2 143799625 143799625 C G KYNU Missense_Mutation p.R428G 0.18 deleterious(0) probably_damaging(0.969) TCGA-3X-AAV9-01 2 167269613 167269613 T C SCN7A Missense_Mutation p.I1145V 0.11 deleterious(0) possibly_damaging(0.519) TCGA-3X-AAV9-01 2 168115754 168115754 G C XIRP2 3'UTR 0.15 TCGA-3X-AAV9-01 2 179318221 179318221 G A DFNB59 Missense_Mutation p.D29N 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-3X-AAV9-01 2 27310211 27310211 G A KHK Silent p.S28S 0.28 TCGA-3X-AAV9-01 2 31168695 31168695 G A GALNT14 Silent p.N237N 0.15 TCGA-3X-AAV9-01 2 54858390 54858390 G T SPTBN1 Missense_Mutation p.R1069L 0.18 deleterious(0.01) probably_damaging(0.93) TCGA-3X-AAV9-01 3 64080675 64080675 C G PRICKLE2 3'UTR 0.08 TCGA-3X-AAV9-01 4 106552107 106552107 C G ARHGEF38 Nonsense_Mutation p.Y187* 0.11 TCGA-3X-AAV9-01 4 185638302 185638302 A T CENPU Silent p.I123I 0.09 TCGA-3X-AAV9-01 4 40122733 40122733 A G N4BP2 Missense_Mutation p.Q1001R 0.20 tolerated(0.24) benign(0.013) TCGA-3X-AAV9-01 5 1232354 1232354 G A SLC6A18 Missense_Mutation p.V61I 0.08 tolerated(0.16) benign(0.025) TCGA-3X-AAV9-01 5 149450020 149450020 T C CSF1R Silent p.R399R 0.13 TCGA-3X-AAV9-01 5 167675119 167675119 C T TENM2 Missense_Mutation p.T2392M 0.06 deleterious(0) probably_damaging(0.999) TCGA-3X-AAV9-01 5 56178366 56178366 C T MAP3K1 Silent p.F1113F 0.09 TCGA-3X-AAV9-01 5 86672323 86672323 C T RASA1 Nonsense_Mutation p.R709* 0.21 TCGA-3X-AAV9-01 6 10763160 10763160 A G MAK 3'UTR 0.09 TCGA-3X-AAV9-01 6 116957009 116957009 C T ZUFSP Missense_Mutation p.E575K 0.10 deleterious(0) possibly_damaging(0.651) TCGA-3X-AAV9-01 6 26411341 26411341 A G BTN3A1 Silent p.G323G 0.04 TCGA-3X-AAV9-01 6 29693309 29693309 C T HLA-F Silent p.V324V 0.07 TCGA-3X-AAV9-01 6 51921499 51921499 G A PKHD1 Nonsense_Mutation p.R564* 0.15 TCGA-3X-AAV9-01 7 142960620 142960620 C T GSTK1 Missense_Mutation p.P5L 0.10 deleterious(0.05) benign(0.004) TCGA-3X-AAV9-01 8 94935050 94935050 G A PDP1 Missense_Mutation p.D280N 0.12 tolerated(0.42) possibly_damaging(0.905) TCGA-3X-AAV9-01 9 2718784 2718784 C T KCNV2 Nonsense_Mutation p.Q349* 0.06 TCGA-3X-AAV9-01 9 66457314 66457314 G C RP11-262H14.1 RNA 0.11 TCGA-3X-AAV9-01 X 140994602 140994602 A T MAGEC1 Missense_Mutation p.E471V 0.24 deleterious_low_confidence(0) benign(0.403) TCGA-3X-AAV9-01 X 47496463 47496463 C G ELK1 Missense_Mutation p.W379C 0.10 deleterious(0) probably_damaging(0.998) TCGA-3X-AAVA-01 10 51994223 51994223 C A ASAH2 Silent p.P259P 0.14 TCGA-3X-AAVA-01 10 75434051 75434051 T C AGAP5 3'UTR 0.08 TCGA-3X-AAVA-01 10 82280581 82280581 A C TSPAN14 3'UTR 0.28 TCGA-3X-AAVA-01 11 124763789 124763789 G A ROBO4 Missense_Mutation p.R491C 0.33 deleterious(0.02) benign(0.014) TCGA-3X-AAVA-01 11 43364760 43364760 G A API5 3'Flank 0.12 TCGA-3X-AAVA-01 11 47196607 47196607 G T ARFGAP2 Missense_Mutation p.P147T 0.35 deleterious(0.02) benign(0.284) TCGA-3X-AAVA-01 12 129100764 129100764 G T TMEM132C Missense_Mutation p.G397W 0.29 deleterious(0) benign(0.318) TCGA-3X-AAVA-01 12 53189250 53189250 G T KRT3 Missense_Mutation p.Q193K 0.34 tolerated(0.95) possibly_damaging(0.717) TCGA-3X-AAVA-01 13 36700277 36700277 T C DCLK1 5'UTR 0.14 TCGA-3X-AAVA-01 15 34018689 34018689 C T RYR3 Silent p.L2339L 0.16 TCGA-3X-AAVA-01 15 48063949 48063949 A G SEMA6D Silent p.P1063P 0.41 TCGA-3X-AAVA-01 15 90281353 90281353 C G WDR93 Missense_Mutation p.P616R 0.12 deleterious(0) benign(0.125) TCGA-3X-AAVA-01 15 90631837 90631837 C A IDH2 Missense_Mutation p.R172S 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-3X-AAVA-01 16 20442583 20442583 G C ACSM5 Missense_Mutation p.E416D 0.11 deleterious(0.01) possibly_damaging(0.821) TCGA-3X-AAVA-01 16 3016345 3016345 C A KREMEN2 Nonsense_Mutation p.C127* 0.31 TCGA-3X-AAVA-01 16 4497003 4497003 G T DNAJA3 Silent p.T371T 0.14 TCGA-3X-AAVA-01 16 71894451 71894451 C T ZNF821 Missense_Mutation p.V237M 0.46 deleterious(0) probably_damaging(0.999) TCGA-3X-AAVA-01 17 36483728 36483728 C T GPR179 Silent p.L1908L 0.30 TCGA-3X-AAVA-01 17 57944110 57944110 C A TUBD1 Missense_Mutation p.G312V 0.43 deleterious(0) probably_damaging(0.948) TCGA-3X-AAVA-01 18 18629827 18629827 T A ROCK1 Missense_Mutation p.N64Y 0.34 deleterious(0.01) benign(0.148) TCGA-3X-AAVA-01 19 36037440 36037440 G T TMEM147 Missense_Mutation p.A54S 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-3X-AAVA-01 19 38579446 38579446 G A SIPA1L3 Silent p.E540E 0.34 TCGA-3X-AAVA-01 19 45532159 45532159 A G RELB Silent p.T300T 0.40 TCGA-3X-AAVA-01 19 51453322 51453322 C T KLK5 Missense_Mutation p.V42M 0.09 tolerated(0.11) benign(0.031) TCGA-3X-AAVA-01 19 55146734 55146734 G A LILRB1 Silent p.Q529Q 0.26 TCGA-3X-AAVA-01 19 9070319 9070320 GG C MUC16 Frame_Shift_Del p.A5709Gfs*72 0.12 TCGA-3X-AAVA-01 19 9089654 9089654 T C MUC16 Missense_Mutation p.S721G 0.21 unknown(0) TCGA-3X-AAVA-01 1 112303538 112303538 A G DDX20 Intron 0.18 TCGA-3X-AAVA-01 1 113242318 113242320 AGA - MOV10 In_Frame_Del p.E867del 0.37 TCGA-3X-AAVA-01 1 117957335 117957335 G C MAN1A2 Missense_Mutation p.G219A 0.49 deleterious(0.01) possibly_damaging(0.866) TCGA-3X-AAVA-01 1 16459707 16459707 T A EPHA2 Missense_Mutation p.N674I 0.44 deleterious(0) probably_damaging(1) TCGA-3X-AAVA-01 1 205132932 205132932 G A DSTYK Silent p.V492V 0.09 TCGA-3X-AAVA-01 1 33985237 33985237 C A CSMD2 Nonsense_Mutation p.E3449* 0.42 TCGA-3X-AAVA-01 20 46283407 46283407 G T NCOA3 3'Flank 0.14 TCGA-3X-AAVA-01 21 35276306 35276306 A T ATP5O Missense_Mutation p.L154H 0.14 tolerated(0.06) probably_damaging(0.946) TCGA-3X-AAVA-01 22 23223436 23223436 A G IGLV3-1 Missense_Mutation p.D69G 0.32 deleterious(0.01) benign(0.119) TCGA-3X-AAVA-01 2 172641829 172641829 A T SLC25A12 Missense_Mutation p.S664R 0.06 tolerated(0.11) benign(0.221) TCGA-3X-AAVA-01 2 27457075 27457075 A G CAD Missense_Mutation p.N1200S 0.40 deleterious(0) probably_damaging(1) TCGA-3X-AAVA-01 2 64189236 64189236 T C VPS54 Silent p.T322T 0.40 TCGA-3X-AAVA-01 2 74435800 74435800 A T MTHFD2 Missense_Mutation p.M172L 0.35 tolerated(0.5) benign(0.37) TCGA-3X-AAVA-01 3 50114605 50114605 G T RBM6 3'UTR 0.15 TCGA-3X-AAVA-01 4 109086281 109086281 G A LEF1 Silent p.H84H 0.37 TCGA-3X-AAVA-01 4 128956946 128956946 T C C4orf29 3'Flank 0.07 TCGA-3X-AAVA-01 4 89018752 89018752 C A ABCG2 Missense_Mutation p.K500N 0.46 deleterious(0.03) benign(0.05) TCGA-3X-AAVA-01 5 149500517 149500517 G T PDGFRB Silent p.V840V 0.33 TCGA-3X-AAVA-01 5 149500518 149500518 A T PDGFRB Missense_Mutation p.V840D 0.32 deleterious(0) probably_damaging(1) TCGA-3X-AAVA-01 5 2747552 2747552 G A IRX2 Intron 0.42 TCGA-3X-AAVA-01 6 27776314 27776314 G A HIST1H2AI Silent p.L109L 0.29 TCGA-3X-AAVA-01 7 128808259 128808259 G A TSPAN33 3'UTR 0.47 TCGA-3X-AAVA-01 7 143175419 143175419 A G TAS2R41 Missense_Mutation p.N152D 0.15 deleterious(0.02) possibly_damaging(0.766) TCGA-3X-AAVA-01 7 26224462 26224462 T C NFE2L3 Missense_Mutation p.Y382H 0.29 tolerated(0.42) benign(0.007) TCGA-3X-AAVA-01 8 41512451 41512451 C T ANK1 3'Flank 0.39 TCGA-3X-AAVA-01 8 63927930 63927930 T C GGH Silent p.G306G 0.11 TCGA-3X-AAVA-01 9 104160882 104160882 G T MRPL50 5'UTR 0.24 TCGA-3X-AAVA-01 9 35546734 35546734 T A RUSC2 Silent p.S72S 0.43 TCGA-3X-AAVA-01 X 129299703 129299703 G A AIFM1 5'UTR 0.53 TCGA-3X-AAVA-01 X 154194709 154194709 G A F8 Silent p.P421P 0.17 TCGA-3X-AAVA-01 X 27840135 27840135 C T MAGEB10 Missense_Mutation p.H238Y 0.19 deleterious(0) probably_damaging(0.967) TCGA-3X-AAVB-01 10 49982677 49982677 G T WDFY4 Nonsense_Mutation p.E910* 0.32 TCGA-3X-AAVB-01 10 52601740 52601740 A G A1CF Missense_Mutation p.Y91H 0.41 deleterious(0) probably_damaging(0.936) TCGA-3X-AAVB-01 11 55135357 55135357 G C OR4A15 5'Flank 0.29 TCGA-3X-AAVB-01 12 131359125 131359125 G A RAN Silent p.S94S 0.34 TCGA-3X-AAVB-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.21 deleterious(0.03) benign(0.376) TCGA-3X-AAVB-01 12 57498569 57498569 G T STAT6 Missense_Mutation p.N343K 0.33 deleterious(0) possibly_damaging(0.635) TCGA-3X-AAVB-01 12 75434461 75434461 C A KCNC2 3'UTR 0.24 TCGA-3X-AAVB-01 13 113200144 113200144 C T TUBGCP3 Missense_Mutation p.A402T 0.15 tolerated(0.11) benign(0.017) TCGA-3X-AAVB-01 13 22067292 22067292 C T MICU2 3'UTR 0.21 TCGA-3X-AAVB-01 14 63841415 63841415 T G PPP2R5E 3'UTR 0.10 TCGA-3X-AAVB-01 15 74427081 74427081 C T ISLR2 Silent p.G662G 0.09 TCGA-3X-AAVB-01 17 26711517 26711517 A - SARM1 Frame_Shift_Del p.S377Afs*47 0.24 TCGA-3X-AAVB-01 17 28268848 28268848 C A EFCAB5 Missense_Mutation p.P12T 0.24 deleterious_low_confidence(0.02) benign(0.244) TCGA-3X-AAVB-01 17 4999052 4999052 A G ZFP3 3'UTR 0.31 TCGA-3X-AAVB-01 17 7232439 7232439 G A NEURL4 Nonsense_Mutation p.Q65* 0.44 TCGA-3X-AAVB-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.56 deleterious(0) probably_damaging(1) TCGA-3X-AAVB-01 18 28956854 28956854 G A DSG4 5'UTR 0.26 TCGA-3X-AAVB-01 18 63511084 63511084 C T CDH7 Missense_Mutation p.R340W 0.37 deleterious(0) probably_damaging(0.978) TCGA-3X-AAVB-01 19 42222257 42222257 C T CEACAM5 Missense_Mutation p.A483V 0.10 tolerated(0.31) possibly_damaging(0.467) TCGA-3X-AAVB-01 1 145473924 145473924 T G ANKRD34A Missense_Mutation p.M199R 0.26 deleterious_low_confidence(0.01) benign(0) TCGA-3X-AAVB-01 1 1458913 1458913 G A ATAD3A Missense_Mutation p.R358Q 0.08 tolerated(0.07) benign(0.109) TCGA-3X-AAVB-01 1 154950570 154950570 A T CKS1B Missense_Mutation p.H56L 0.22 deleterious(0) benign(0.35) TCGA-3X-AAVB-01 1 40724003 40724003 C T ZMPSTE24 Silent p.F20F 0.14 TCGA-3X-AAVB-01 1 45266806 45266806 G T PLK3 Missense_Mutation p.L139F 0.14 deleterious(0) probably_damaging(1) TCGA-3X-AAVB-01 1 6713011 6713011 C T DNAJC11 Missense_Mutation p.A170T 0.09 deleterious(0.01) benign(0.061) TCGA-3X-AAVB-01 21 45928789 45928789 C T TSPEAR Intron 0.32 TCGA-3X-AAVB-01 22 18222854 18222854 C T BID Intron 0.27 TCGA-3X-AAVB-01 22 44229568 44229568 G T SULT4A1 Missense_Mutation p.H185Q 0.19 deleterious(0.02) benign(0.18) TCGA-3X-AAVB-01 3 9746275 9746275 C G CPNE9 Missense_Mutation p.L25V 0.42 deleterious(0) possibly_damaging(0.793) TCGA-3X-AAVB-01 5 122522897 122522897 G A PRDM6 3'UTR 0.13 TCGA-3X-AAVB-01 5 131729481 131729481 G A SLC22A5 Missense_Mutation p.D522N 0.14 tolerated(0.07) benign(0.088) TCGA-3X-AAVB-01 5 156670696 156670696 G T ITK Missense_Mutation p.G375V 0.35 deleterious(0) probably_damaging(1) TCGA-3X-AAVB-01 7 100490325 100490325 G A ACHE Missense_Mutation p.R395W 0.13 deleterious(0) probably_damaging(0.913) TCGA-3X-AAVB-01 7 151891214 151891214 C G KMT2C Splice_Site p.X1514_splice 0.17 TCGA-3X-AAVB-01 7 71868298 71868298 G A CALN1 Silent p.D19D 0.35 TCGA-3X-AAVB-01 9 129596910 129596910 G A ZBTB43 3'UTR 0.60 TCGA-3X-AAVB-01 9 131199451 131199451 G T CERCAM 3'UTR 0.58 TCGA-3X-AAVB-01 9 88631517 88631517 A T NAA35 Missense_Mutation p.Q544H 0.64 tolerated(0.06) possibly_damaging(0.454) TCGA-3X-AAVB-01 X 114426604 114426604 G A RBMXL3 Missense_Mutation p.R867H 0.24 tolerated_low_confidence(0.15) possibly_damaging(0.522) TCGA-3X-AAVB-01 X 118750681 118750681 C A SEPT6 3'Flank 0.06 TCGA-3X-AAVB-01 X 135593803 135593803 A - HTATSF1 Frame_Shift_Del p.Y634Mfs*143 0.27 TCGA-3X-AAVB-01 X 153595859 153595859 C A FLNA Missense_Mutation p.M258I 0.24 deleterious(0) probably_damaging(0.943) TCGA-3X-AAVB-01 X 99663999 99663999 T G PCDH19 5'UTR 0.13 TCGA-3X-AAVC-01 10 13541852 13541852 C G BEND7 Missense_Mutation p.G73A 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.469) TCGA-3X-AAVC-01 11 1016412 1016414 GAG - MUC6 In_Frame_Del p.S2130del 0.42 TCGA-3X-AAVC-01 11 26547204 26547204 G A ANO3 Missense_Mutation p.G239R 0.26 tolerated(0.53) benign(0) TCGA-3X-AAVC-01 11 44941490 44941490 C T TSPAN18 Silent p.D185D 0.37 TCGA-3X-AAVC-01 11 57322034 57322034 C T UBE2L6 Silent p.P62P 0.09 TCGA-3X-AAVC-01 11 57886193 57886193 C T OR9I1 Missense_Mutation p.A242T 0.36 tolerated(0.23) benign(0.052) TCGA-3X-AAVC-01 11 57982413 57982413 C T OR1S1 Missense_Mutation p.T66M 0.55 deleterious(0.01) benign(0.017) TCGA-3X-AAVC-01 11 65767103 65767103 C T EIF1AD Silent p.V80V 0.18 TCGA-3X-AAVC-01 12 14576921 14576921 G A ATF7IP Silent p.Q24Q 0.65 TCGA-3X-AAVC-01 13 21742376 21742376 C T SKA3 Missense_Mutation p.R165Q 0.32 tolerated(0.26) probably_damaging(0.989) TCGA-3X-AAVC-01 13 28122525 28122525 G A LNX2 Nonsense_Mutation p.Q674* 0.22 TCGA-3X-AAVC-01 14 105411931 105411931 T C AHNAK2 Missense_Mutation p.D3286G 0.47 probably_damaging(0.981) TCGA-3X-AAVC-01 14 50550384 50550385 - TC C14orf183 Nonsense_Mutation p.Y320* 0.20 TCGA-3X-AAVC-01 14 57046731 57046731 C T TMEM260 Silent p.F33F 0.15 TCGA-3X-AAVC-01 14 65233363 65233363 C T SPTB Intron 0.27 TCGA-3X-AAVC-01 15 101929744 101929744 C T PCSK6 Missense_Mutation p.C411Y 0.08 deleterious(0) probably_damaging(1) TCGA-3X-AAVC-01 15 54556494 54556494 T C UNC13C Missense_Mutation p.F1193L 0.41 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-3X-AAVC-01 16 18895427 18895427 C A SMG1 Missense_Mutation p.G362C 0.13 deleterious(0) probably_damaging(0.999) TCGA-3X-AAVC-01 16 32264872 32264872 T C TP53TG3D Silent p.P66P 0.14 TCGA-3X-AAVC-01 16 56716410 56716411 - T MT1X 5'UTR 0.24 TCGA-3X-AAVC-01 16 777405 777405 C T HAGHL 5'UTR 0.22 TCGA-3X-AAVC-01 17 2570445 2570445 C T PAFAH1B1 Missense_Mutation p.P118S 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-3X-AAVC-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.55 deleterious(0) probably_damaging(1) TCGA-3X-AAVC-01 17 76440749 76440749 G A DNAH17 Missense_Mutation p.T3808M 0.18 possibly_damaging(0.667) TCGA-3X-AAVC-01 18 28710755 28710755 C T DSC1 Intron 0.61 TCGA-3X-AAVC-01 18 55103945 55103947 ATC - ONECUT2 In_Frame_Del p.I333del 0.68 TCGA-3X-AAVC-01 19 10385609 10385609 A G ICAM1 Missense_Mutation p.Y79C 0.23 deleterious(0) probably_damaging(0.983) TCGA-3X-AAVC-01 19 39734285 39734285 T C IFNL3 Missense_Mutation p.D193G 0.48 deleterious(0.04) benign(0.14) TCGA-3X-AAVC-01 19 4362634 4362634 G C SH3GL1 Silent p.P276P 0.55 TCGA-3X-AAVC-01 19 57642416 57642416 C A USP29 Missense_Mutation p.N791K 0.11 tolerated(0.2) possibly_damaging(0.51) TCGA-3X-AAVC-01 1 10434992 10434992 G A KIF1B Missense_Mutation p.R1680H 0.49 deleterious(0) probably_damaging(0.993) TCGA-3X-AAVC-01 1 151220444 151220444 C G PIP5K1A 3'Flank 0.35 TCGA-3X-AAVC-01 1 152191793 152191793 C G HRNR Missense_Mutation p.G771A 0.50 unknown(0) TCGA-3X-AAVC-01 1 161130441 161130441 C T USP21 Missense_Mutation p.A4V 0.36 tolerated_low_confidence(0.15) probably_damaging(0.95) TCGA-3X-AAVC-01 1 183617622 183617622 A T APOBEC4 Missense_Mutation p.F99I 0.12 deleterious(0) probably_damaging(0.989) TCGA-3X-AAVC-01 1 201618049 201618049 C G NAV1 Missense_Mutation p.L85V 0.33 deleterious(0) probably_damaging(0.996) TCGA-3X-AAVC-01 1 47098539 47098539 A - ATPAF1 3'UTR 0.08 TCGA-3X-AAVC-01 1 94486813 94486813 C T ABCA4 Silent p.Q1667Q 0.17 TCGA-3X-AAVC-01 1 9811620 9811620 G A CLSTN1 Missense_Mutation p.A187V 0.12 deleterious(0) probably_damaging(1) TCGA-3X-AAVC-01 20 18143422 18143422 A G CSRP2BP Missense_Mutation p.R502G 0.10 deleterious(0) probably_damaging(0.999) TCGA-3X-AAVC-01 20 62594090 62594090 C T ZNF512B Silent p.P671P 0.07 TCGA-3X-AAVC-01 21 31743965 31743965 C T KRTAP13-2 3'UTR 0.32 TCGA-3X-AAVC-01 2 127811543 127811543 G T BIN1 Missense_Mutation p.L393M 0.47 tolerated(0.19) benign(0.094) TCGA-3X-AAVC-01 2 131878306 131878306 G A PLEKHB2 Intron 0.33 TCGA-3X-AAVC-01 2 137748460 137748460 C T THSD7B Intron 0.22 TCGA-3X-AAVC-01 2 174062657 174062657 G A MLTK Intron 0.33 TCGA-3X-AAVC-01 2 232225546 232225546 G A MIR4777 5'Flank 0.23 TCGA-3X-AAVC-01 2 238296453 238296453 T C COL6A3 Missense_Mutation p.I362V 0.54 benign(0.163) TCGA-3X-AAVC-01 2 31403830 31403830 G A CAPN14 Missense_Mutation p.A561V 0.29 tolerated(0.13) benign(0.016) TCGA-3X-AAVC-01 2 43010487 43010487 C T HAAO Missense_Mutation p.R106Q 0.31 deleterious(0) probably_damaging(0.915) TCGA-3X-AAVC-01 2 62449365 62449365 G C B3GNT2 Missense_Mutation p.G4R 0.34 tolerated_low_confidence(0.55) possibly_damaging(0.698) TCGA-3X-AAVC-01 3 122459462 122459462 G A HSPBAP1 Silent p.S399S 0.32 TCGA-3X-AAVC-01 3 52510551 52510551 C T NISCH Missense_Mutation p.T285I 0.88 tolerated(0.19) benign(0.082) TCGA-3X-AAVC-01 3 52561903 52561903 G A NT5DC2 Missense_Mutation p.R293C 0.20 deleterious(0) probably_damaging(0.994) TCGA-3X-AAVC-01 3 52597299 52597308 CTGTGGGGGT - PBRM1 Intron 0.59 TCGA-3X-AAVC-01 4 189020065 189020065 G A TRIML2 Intron 0.45 TCGA-3X-AAVC-01 4 54257252 54257252 G A FIP1L1 Silent p.R194R 0.45 TCGA-3X-AAVC-01 5 10434489 10434489 A G MARCH6 3'UTR 0.20 TCGA-3X-AAVC-01 5 73931139 73931139 T - ENC1 Frame_Shift_Del p.Y391Lfs*21 0.61 TCGA-3X-AAVC-01 5 864589 864589 C T BRD9 Silent p.K596K 0.09 TCGA-3X-AAVC-01 5 94991955 94991955 A G RFESD Missense_Mutation p.K192R 0.19 tolerated(0.32) benign(0.002) TCGA-3X-AAVC-01 6 109787628 109787628 G A ZBTB24 Missense_Mutation p.A507V 0.16 tolerated(0.19) benign(0.004) TCGA-3X-AAVC-01 6 119295656 119295656 A G FAM184A Missense_Mutation p.M951T 0.14 deleterious(0) possibly_damaging(0.843) TCGA-3X-AAVC-01 6 126081043 126081043 G A HEY2 3'UTR 0.25 TCGA-3X-AAVC-01 6 168289932 168289932 A G MLLT4 Missense_Mutation p.K312R 0.08 tolerated(0.13) benign(0.019) TCGA-3X-AAVC-01 6 50696636 50696636 T C TFAP2D Silent p.S222S 0.58 TCGA-3X-AAVC-01 7 116199372 116199372 T - CAV1 3'UTR 0.46 TCGA-3X-AAVC-01 7 2771312 2771312 C T GNA12 Missense_Mutation p.V217I 0.45 tolerated(0.18) benign(0) TCGA-3X-AAVC-01 7 72416719 72416719 C T POM121 Intron 0.44 TCGA-3X-AAVC-01 7 90747502 90747502 G A CDK14 3'UTR 0.29 TCGA-3X-AAVC-01 8 108315583 108315583 C A ANGPT1 Missense_Mutation p.G274V 0.27 tolerated(0.28) benign(0.046) TCGA-3X-AAVC-01 8 120795791 120795791 T C TAF2 Missense_Mutation p.M648V 0.72 tolerated(0.19) possibly_damaging(0.497) TCGA-3X-AAVC-01 8 146107584 146107584 G T ZNF250 Missense_Mutation p.H333Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-3X-AAVC-01 8 24212083 24212083 C - ADAM28 3'UTR 0.44 TCGA-3X-AAVC-01 8 86057705 86057705 C A LRRCC1 Missense_Mutation p.Q1020K 0.58 tolerated(0.12) benign(0.011) TCGA-3X-AAVC-01 8 89053972 89053972 A T MMP16 Missense_Mutation p.I514K 0.09 tolerated(0.46) benign(0.002) TCGA-3X-AAVC-01 8 95539408 95539408 T C KIAA1429 Missense_Mutation p.Y355C 0.59 tolerated(0.08) probably_damaging(0.967) TCGA-3X-AAVC-01 X 140270682 140270682 C T LDOC1 3'UTR 0.35 TCGA-3X-AAVC-01 X 153149697 153149697 G A LCA10 Missense_Mutation p.D177N 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.737) TCGA-3X-AAVC-01 X 153631921 153631921 A G DNASE1L1 Silent p.D118D 0.31 TCGA-3X-AAVC-01 X 20030593 20030593 G - MAP7D2 Frame_Shift_Del p.T649Ifs*42 0.26 TCGA-3X-AAVC-01 X 64958961 64958961 G A MSN Missense_Mutation p.A492T 0.44 tolerated(0.24) possibly_damaging(0.458) TCGA-3X-AAVC-01 X 76709751 76709751 G A FGF16 Silent p.S35S 0.31 TCGA-3X-AAVE-01 10 51026475 51026475 T A PARG 3'UTR 0.23 TCGA-3X-AAVE-01 10 5496410 5496410 A G NET1 Silent p.K317K 0.16 TCGA-3X-AAVE-01 10 5567541 5567541 G - CALML3 3'UTR 0.19 TCGA-3X-AAVE-01 11 102221620 102221620 G C BIRC2 Missense_Mutation p.R314T 0.23 deleterious(0) probably_damaging(0.99) TCGA-3X-AAVE-01 11 55606662 55606662 G A OR5D16 Missense_Mutation p.M145I 0.08 tolerated(0.08) benign(0.014) TCGA-3X-AAVE-01 15 101170164 101170164 A G ASB7 Missense_Mutation p.Y245C 0.29 tolerated(0.18) possibly_damaging(0.477) TCGA-3X-AAVE-01 15 41483652 41483652 T C EXD1 Silent p.Q226Q 0.22 TCGA-3X-AAVE-01 15 85400849 85400849 G A ALPK3 Silent p.L1162L 0.14 TCGA-3X-AAVE-01 15 93571083 93571083 A G CHD2 3'UTR 0.10 TCGA-3X-AAVE-01 16 53525870 53525870 T C AKTIP 3'UTR 0.30 TCGA-3X-AAVE-01 16 89712424 89712425 - CCTT CHMP1A 3'UTR 0.22 TCGA-3X-AAVE-01 17 32955682 32955682 G A TMEM132E Missense_Mutation p.A277T 0.18 tolerated(0.37) benign(0.159) TCGA-3X-AAVE-01 17 60759121 60759121 C A MRC2 Intron 0.33 TCGA-3X-AAVE-01 17 66303598 66303598 C T ARSG 5'UTR 0.10 TCGA-3X-AAVE-01 18 67995075 67995076 - T SOCS6 3'UTR 0.13 TCGA-3X-AAVE-01 19 12297963 12297963 G A ZNF136 Missense_Mutation p.C257Y 0.11 deleterious(0) probably_damaging(0.995) TCGA-3X-AAVE-01 19 12939521 12939521 T C RTBDN Silent p.L137L 0.27 TCGA-3X-AAVE-01 19 15758064 15758064 C T CYP4F3 Missense_Mutation p.T152M 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-3X-AAVE-01 19 15918259 15918259 C T OR10H1 Missense_Mutation p.A197T 0.05 tolerated(0.72) benign(0.026) TCGA-3X-AAVE-01 19 41709463 41709463 G A CYP2S1 Missense_Mutation p.R362Q 0.15 deleterious(0) probably_damaging(0.984) TCGA-3X-AAVE-01 19 44130107 44130107 C A CADM4 Missense_Mutation p.E237D 0.23 deleterious(0.02) benign(0.04) TCGA-3X-AAVE-01 19 47258782 47258782 G A FKRP Silent p.S25S 0.20 TCGA-3X-AAVE-01 19 8150345 8150345 C T FBN3 Missense_Mutation p.R2330Q 0.24 deleterious(0.02) probably_damaging(1) TCGA-3X-AAVE-01 19 875282 875282 T C MED16 Missense_Mutation p.D578G 0.32 deleterious(0) possibly_damaging(0.822) TCGA-3X-AAVE-01 1 109492497 109492497 G A CLCC1 Missense_Mutation p.S59L 0.23 tolerated(0.18) possibly_damaging(0.609) TCGA-3X-AAVE-01 1 109964511 109964511 G A PSMA5 Nonsense_Mutation p.Q23* 0.26 TCGA-3X-AAVE-01 1 145518133 145518133 G A PEX11B Missense_Mutation p.D79N 0.33 deleterious(0.02) probably_damaging(1) TCGA-3X-AAVE-01 1 173743534 173743534 A G KLHL20 Silent p.L462L 0.06 TCGA-3X-AAVE-01 1 190068073 190068073 C T BRINP3 Missense_Mutation p.R459H 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-3X-AAVE-01 1 211652604 211652604 A G RD3 Missense_Mutation p.V121A 0.17 tolerated(0.12) benign(0.05) TCGA-3X-AAVE-01 1 22915663 22915663 C T EPHA8 Missense_Mutation p.R427W 0.17 deleterious(0.03) benign(0.28) TCGA-3X-AAVE-01 1 24140684 24140684 G A HMGCL Missense_Mutation p.R165W 0.22 deleterious(0) probably_damaging(1) TCGA-3X-AAVE-01 1 27210710 27210710 C A GPN2 Missense_Mutation p.E267D 0.25 tolerated(0.21) benign(0.082) TCGA-3X-AAVE-01 1 39798190 39798190 A G MACF1 Intron 0.16 TCGA-3X-AAVE-01 1 57409394 57409394 G A C8B Silent p.C403C 0.20 TCGA-3X-AAVE-01 20 23349409 23349409 T C GZF1 Silent p.P490P 0.40 TCGA-3X-AAVE-01 20 55777538 55777538 C T BMP7 Silent p.T251T 0.15 TCGA-3X-AAVE-01 20 61944199 61944199 C A COL20A1 Silent p.V663V 0.27 TCGA-3X-AAVE-01 22 28394632 28394632 A G TTC28 Missense_Mutation p.F1672S 0.18 deleterious(0) possibly_damaging(0.799) TCGA-3X-AAVE-01 22 30888052 30888052 G A SEC14L4 Missense_Mutation p.P252L 0.28 deleterious(0) probably_damaging(0.912) TCGA-3X-AAVE-01 22 42191438 42191438 T C MEI1 Silent p.S1186S 0.26 TCGA-3X-AAVE-01 2 128407628 128407628 A G GPR17 Silent p.P14P 0.30 TCGA-3X-AAVE-01 2 174085956 174085956 A T MLTK Intron 0.19 TCGA-3X-AAVE-01 2 198950711 198950711 C T PLCL1 Missense_Mutation p.R824W 0.20 deleterious(0) probably_damaging(0.998) TCGA-3X-AAVE-01 2 225704784 225704784 T A DOCK10 Missense_Mutation p.L889F 0.07 deleterious(0) probably_damaging(0.999) TCGA-3X-AAVE-01 2 88328025 88328027 TAA - KRCC1 In_Frame_Del p.I19del 0.26 TCGA-3X-AAVE-01 3 196386693 196386693 G A NRROS Missense_Mutation p.R60Q 0.23 tolerated(0.56) benign(0.002) TCGA-3X-AAVE-01 3 67054577 67054577 G A KBTBD8 Missense_Mutation p.G396R 0.33 deleterious(0) probably_damaging(1) TCGA-3X-AAVE-01 4 20736336 20736336 A G KCNIP4 Missense_Mutation p.I151T 0.23 tolerated(0.07) benign(0.164) TCGA-3X-AAVE-01 5 153436017 153436017 A G MFAP3 3'UTR 0.24 TCGA-3X-AAVE-01 5 154202045 154202045 G A FAXDC2 Missense_Mutation p.P222L 0.27 deleterious(0) probably_damaging(1) TCGA-3X-AAVE-01 6 139498698 139498698 A G HECA 3'UTR 0.19 TCGA-3X-AAVE-01 6 31855598 31855598 C T EHMT2 Missense_Mutation p.R629Q 0.29 tolerated(0.07) probably_damaging(0.929) TCGA-3X-AAVE-01 6 64394977 64394977 A C PHF3 Missense_Mutation p.N452H 0.25 tolerated_low_confidence(0.29) possibly_damaging(0.654) TCGA-3X-AAVE-01 6 88107925 88107925 A G C6orf164 5'UTR 0.38 TCGA-3X-AAVE-01 7 112102177 112102178 - A IFRD1 Frame_Shift_Ins p.W248Mfs*12 0.20 TCGA-3X-AAVE-01 7 150704218 150704218 G A NOS3 Missense_Mutation p.A656T 0.07 tolerated(0.06) benign(0.116) TCGA-3X-AAVE-01 7 5645195 5645195 C T FSCN1 3'UTR 0.39 TCGA-3X-AAVE-01 7 6731851 6731851 T C ZNF12 Missense_Mutation p.Y241C 0.13 tolerated(0.28) benign(0.007) TCGA-3X-AAVE-01 8 13162579 13162579 C A DLC1 Intron 0.20 TCGA-3X-AAVE-01 8 37555950 37555950 G A ZNF703 Missense_Mutation p.A511T 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-3X-AAVE-01 8 57353667 57353667 A G PENK 3'UTR 0.15 TCGA-3X-AAVE-01 9 129983092 129983092 C G RALGPS1 3'UTR 0.50 TCGA-3X-AAVE-01 9 138703285 138703285 G T CAMSAP1 Nonsense_Mutation p.S1560* 0.49 TCGA-3X-AAVE-01 9 21971003 21971003 C G CDKN2A Missense_Mutation p.E119Q 0.38 tolerated(0.45) benign(0.056) TCGA-4G-AAZO-01 10 101489417 101489417 C A COX15 Missense_Mutation p.R55S 0.13 tolerated(0.41) benign(0) TCGA-4G-AAZO-01 10 101802126 101802126 G A CPN1 3'UTR 0.21 TCGA-4G-AAZO-01 10 102588851 102588852 - A PAX2 3'UTR 0.22 TCGA-4G-AAZO-01 10 104117876 104117876 G A GBF1 Missense_Mutation p.M240I 0.12 tolerated(0.27) benign(0) TCGA-4G-AAZO-01 10 27529505 27529505 C G ACBD5 Intron 0.46 TCGA-4G-AAZO-01 10 97197306 97197306 T A SORBS1 Missense_Mutation p.D6V 0.11 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-4G-AAZO-01 11 117869604 117869604 C A IL10RA Missense_Mutation p.Q329K 0.10 deleterious(0.01) possibly_damaging(0.786) TCGA-4G-AAZO-01 11 31823198 31823198 A G PAX6 Missense_Mutation p.Y104H 0.24 deleterious(0) probably_damaging(0.98) TCGA-4G-AAZO-01 11 55703319 55703319 C T OR5I1 Silent p.L186L 0.13 TCGA-4G-AAZO-01 12 7640276 7640276 G T CD163 Intron 0.10 TCGA-4G-AAZO-01 13 103396598 103396598 T C LINC00283 RNA 0.23 TCGA-4G-AAZO-01 13 113512205 113512205 G A ATP11A Missense_Mutation p.S831N 0.14 deleterious(0) probably_damaging(0.998) TCGA-4G-AAZO-01 13 50589227 50589227 A T TRIM13 3'Flank 0.12 TCGA-4G-AAZO-01 14 35005377 35005377 T G EAPP Missense_Mutation p.E60A 0.22 deleterious(0.01) probably_damaging(0.947) TCGA-4G-AAZO-01 14 61446086 61446086 T C TRMT5 Missense_Mutation p.Y177C 0.15 deleterious(0) probably_damaging(0.997) TCGA-4G-AAZO-01 15 100272030 100272030 C T LYSMD4 Silent p.A29A 0.25 TCGA-4G-AAZO-01 15 33023106 33023106 A G GREM1 Missense_Mutation p.E72G 0.45 deleterious(0) probably_damaging(0.91) TCGA-4G-AAZO-01 15 65489606 65489606 C A CILP Silent p.L1006L 0.13 TCGA-4G-AAZO-01 17 36489224 36489224 G A GPR179 Silent p.D649D 0.31 TCGA-4G-AAZO-01 17 37880219 37880219 T C ERBB2 Silent p.L755L 0.41 TCGA-4G-AAZO-01 17 37880220 37880220 T C ERBB2 Missense_Mutation p.L755S 0.41 deleterious(0) probably_damaging(1) TCGA-4G-AAZO-01 17 40460310 40460310 C A STAT5A Missense_Mutation p.P674H 0.08 deleterious(0) possibly_damaging(0.832) TCGA-4G-AAZO-01 17 47375179 47375179 A T ZNF652 3'UTR 0.22 TCGA-4G-AAZO-01 17 60043913 60043913 C T MED13 Missense_Mutation p.V1431I 0.24 tolerated(0.06) benign(0.391) TCGA-4G-AAZO-01 17 71334731 71334731 C A SDK2 Missense_Mutation p.V2172F 0.32 deleterious(0) probably_damaging(0.998) TCGA-4G-AAZO-01 17 74003247 74003247 C T EVPL Silent p.A2013A 0.07 TCGA-4G-AAZO-01 18 30260289 30260289 C T KLHL14 Silent p.G477G 0.08 TCGA-4G-AAZO-01 18 30950047 30950047 A T CCDC178 Missense_Mutation p.D105E 0.43 tolerated(0.19) benign(0.333) TCGA-4G-AAZO-01 19 22157097 22157097 G T ZNF208 Missense_Mutation p.H247N 0.52 deleterious(0.01) probably_damaging(0.953) TCGA-4G-AAZO-01 19 44832524 44832525 CT - ZNF112 Frame_Shift_Del p.R601Sfs*11 0.17 TCGA-4G-AAZO-01 1 110458281 110458281 G A CSF1 Missense_Mutation p.C63Y 0.16 deleterious(0) probably_damaging(1) TCGA-4G-AAZO-01 1 32688006 32688006 T - EIF3I 5'UTR 0.17 TCGA-4G-AAZO-01 1 53730058 53730058 C T LRP8 Missense_Mutation p.D480N 0.29 tolerated(0.12) probably_damaging(0.999) TCGA-4G-AAZO-01 1 56960983 56960983 A - PPAP2B 3'UTR 0.33 TCGA-4G-AAZO-01 20 39832673 39832673 G C ZHX3 Missense_Mutation p.A295G 0.42 deleterious(0.01) benign(0.017) TCGA-4G-AAZO-01 21 47421295 47421295 G C COL6A1 Missense_Mutation p.V651L 0.33 tolerated(0.19) benign(0.307) TCGA-4G-AAZO-01 22 39428406 39428406 G A APOBEC3D 3'UTR 0.47 TCGA-4G-AAZO-01 22 41221953 41221953 A T ST13 3'UTR 0.20 TCGA-4G-AAZO-01 2 106761718 106761718 C T UXS1 Missense_Mutation p.V134M 0.18 tolerated(0.05) benign(0.205) TCGA-4G-AAZO-01 2 125320826 125320826 G - CNTNAP5 Frame_Shift_Del p.S560Tfs*80 0.32 TCGA-4G-AAZO-01 2 152547337 152547337 A T NEB Missense_Mutation p.H738Q 0.27 possibly_damaging(0.886) TCGA-4G-AAZO-01 2 185802286 185802286 T A ZNF804A Silent p.T721T 0.22 TCGA-4G-AAZO-01 2 18766068 18766068 G A NT5C1B Silent p.R205R 0.34 TCGA-4G-AAZO-01 2 26536340 26536340 T C GPR113 Missense_Mutation p.I460V 0.29 tolerated(1) benign(0.002) TCGA-4G-AAZO-01 2 32724972 32724972 A G BIRC6 Missense_Mutation p.R2943G 0.33 possibly_damaging(0.772) TCGA-4G-AAZO-01 3 100963395 100963395 C T IMPG2 Missense_Mutation p.E594K 0.49 tolerated(0.08) benign(0.118) TCGA-4G-AAZO-01 3 111604232 111604232 A G PHLDB2 Silent p.R436R 0.65 TCGA-4G-AAZO-01 3 45500306 45500306 A T LARS2 Silent p.S226S 0.78 TCGA-4G-AAZO-01 3 52437804 52437805 TG A BAP1 Frame_Shift_Del p.E454Sfs*117 0.45 TCGA-4G-AAZO-01 4 122739257 122739257 A G CCNA2 Missense_Mutation p.Y398H 0.26 tolerated(0.2) benign(0.195) TCGA-4G-AAZO-01 5 1077985 1077985 T C SLC12A7 Missense_Mutation p.Q531R 0.43 deleterious(0) possibly_damaging(0.864) TCGA-4G-AAZO-01 5 43704461 43704461 A G NNT Silent p.T1072T 0.33 TCGA-4G-AAZO-01 5 5318295 5318295 C T ADAMTS16 Silent p.L1154L 0.65 TCGA-4G-AAZO-01 6 152647206 152647206 C A SYNE1 Missense_Mutation p.A5109S 0.80 benign(0.014) TCGA-4G-AAZO-01 6 158569934 158569934 C A SERAC1 Missense_Mutation p.L106F 0.08 tolerated(0.1) benign(0.011) TCGA-4G-AAZO-01 6 7881499 7881499 T C TXNDC5 3'Flank 0.39 TCGA-4G-AAZO-01 7 144060672 144060672 G T ARHGEF5 Nonsense_Mutation p.E304* 0.14 TCGA-4G-AAZO-01 7 8474179 8474179 G A NXPH1 5'UTR 0.20 TCGA-4G-AAZO-01 8 28573668 28573668 G A EXTL3 Nonsense_Mutation p.W31* 0.19 TCGA-4G-AAZO-01 8 41788202 41788202 G A KAT6A 3'UTR 0.32 TCGA-4G-AAZO-01 8 56015537 56015537 C A XKR4 Missense_Mutation p.S163R 0.32 deleterious(0.01) benign(0.015) TCGA-4G-AAZO-01 9 139341749 139341749 G T SEC16A Silent p.L2209L 0.21 TCGA-4G-AAZO-01 9 139754378 139754378 C A MAMDC4 Silent p.G1078G 0.26 TCGA-4G-AAZO-01 9 35698454 35698454 C T TLN1 Missense_Mutation p.A2413T 0.31 tolerated(0.1) benign(0.253) TCGA-4G-AAZO-01 X 134155630 134155630 G A FAM127C 3'UTR 0.55 TCGA-4G-AAZO-01 X 152085855 152085856 - TA ZNF185 Frame_Shift_Ins p.S98Tfs*23 0.33 TCGA-4G-AAZT-01 10 134006179 134006179 T C DPYSL4 Missense_Mutation p.L49P 0.12 deleterious(0.02) benign(0.074) TCGA-4G-AAZT-01 10 77157768 77157768 A G ZNF503 3'UTR 0.15 TCGA-4G-AAZT-01 11 119050623 119050623 C G NLRX1 Silent p.L631L 0.35 TCGA-4G-AAZT-01 11 47188426 47188426 C T ARFGAP2 Missense_Mutation p.R406Q 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-4G-AAZT-01 12 104126866 104126866 C T STAB2 Missense_Mutation p.A1789V 0.50 deleterious(0) benign(0.363) TCGA-4G-AAZT-01 12 31944230 31944230 A T H3F3C 3'UTR 0.04 TCGA-4G-AAZT-01 12 393307 393307 A T KDM5A 3'UTR 0.04 TCGA-4G-AAZT-01 12 57586977 57586977 G A LRP1 Missense_Mutation p.R2525Q 0.45 benign(0.052) TCGA-4G-AAZT-01 12 77208948 77208948 A G ZDHHC17 Missense_Mutation p.N189S 0.16 tolerated(0.14) probably_damaging(0.96) TCGA-4G-AAZT-01 13 106142521 106142521 G C DAOA 3'UTR 0.48 TCGA-4G-AAZT-01 13 73633189 73633189 G T KLF5 5'UTR 0.24 TCGA-4G-AAZT-01 14 68145004 68145004 G A RDH11 3'UTR 0.07 TCGA-4G-AAZT-01 15 100269292 100269292 A G LYSMD4 3'UTR 0.35 TCGA-4G-AAZT-01 15 74425467 74425467 G A ISLR2 Silent p.A124A 0.27 TCGA-4G-AAZT-01 16 2009556 2009556 C T NDUFB10 5'UTR 0.45 TCGA-4G-AAZT-01 16 30007002 30007002 C T HIRIP3 5'UTR 0.41 TCGA-4G-AAZT-01 17 10441033 10441033 C T MYH2 Silent p.T512T 0.29 TCGA-4G-AAZT-01 17 43322776 43322776 C T FMNL1 Missense_Mutation p.T962M 0.26 deleterious(0.02) probably_damaging(1) TCGA-4G-AAZT-01 17 45760484 45760484 A C KPNB1 3'UTR 0.38 TCGA-4G-AAZT-01 17 62020345 62020345 G A SCN4A Nonsense_Mutation p.Q1377* 0.16 TCGA-4G-AAZT-01 18 44579415 44579415 C T KATNAL2 Missense_Mutation p.T24I 0.38 tolerated(0.14) benign(0.002) TCGA-4G-AAZT-01 19 15536231 15536231 A C WIZ Missense_Mutation p.L477R 0.41 deleterious(0) benign(0.377) TCGA-4G-AAZT-01 19 3157762 3157762 A G GNA15 Missense_Mutation p.I261V 0.06 deleterious(0.04) benign(0.015) TCGA-4G-AAZT-01 19 39006851 39006851 C T RYR1 Missense_Mutation p.R3227W 0.46 benign(0.317) TCGA-4G-AAZT-01 19 39229091 39229091 C T CAPN12 Missense_Mutation p.G286D 0.10 deleterious(0) probably_damaging(0.984) TCGA-4G-AAZT-01 19 4816516 4816516 G A TICAM1 Missense_Mutation p.P625L 0.48 tolerated(0.35) benign(0.006) TCGA-4G-AAZT-01 19 51532549 51532549 G A KLK12 Intron 0.19 TCGA-4G-AAZT-01 1 112999056 112999056 A G CTTNBP2NL Silent p.T314T 0.21 TCGA-4G-AAZT-01 1 152283924 152283924 G A FLG Silent p.H1146H 0.41 TCGA-4G-AAZT-01 1 15987540 15987540 A - RSC1A1 Frame_Shift_Del p.D394Tfs*36 0.33 TCGA-4G-AAZT-01 1 16892237 16892237 A C NBPF1 Missense_Mutation p.C985W 0.12 tolerated(0.09) benign(0.001) TCGA-4G-AAZT-01 1 201980321 201980334 CAGCTCGGAGGACT - ELF3 Frame_Shift_Del p.S20Hfs*15 0.42 TCGA-4G-AAZT-01 1 220835530 220835530 C T MARK1 3'UTR 0.44 TCGA-4G-AAZT-01 1 236205367 236205367 G A NID1 Silent p.Y326Y 0.43 TCGA-4G-AAZT-01 1 240371625 240371625 G A FMN2 Silent p.A1171A 0.05 TCGA-4G-AAZT-01 1 240374462 240374462 T A FMN2 Nonsense_Mutation p.L1331* 0.38 TCGA-4G-AAZT-01 1 24128931 24128931 G C HMGCL 3'UTR 0.07 TCGA-4G-AAZT-01 1 27099298 27099318 TGGAGCAGGAGCAATTCAGTT - ARID1A Splice_Site p.X1180_splice 0.53 TCGA-4G-AAZT-01 20 57016107 57016107 C A VAPB Missense_Mutation p.Q181K 0.48 tolerated(0.88) possibly_damaging(0.772) TCGA-4G-AAZT-01 20 8703060 8703060 A C PLCB1 Missense_Mutation p.M525L 0.38 tolerated(0.07) benign(0.002) TCGA-4G-AAZT-01 21 30332965 30332965 C T LTN1 Missense_Mutation p.E789K 0.41 deleterious(0) probably_damaging(0.999) TCGA-4G-AAZT-01 2 178491259 178491259 C A PDE11A 3'UTR 0.08 TCGA-4G-AAZT-01 2 179448317 179448317 A G TTN Intron 0.55 TCGA-4G-AAZT-01 2 183387200 183387200 C T PDE1A 5'UTR 0.17 TCGA-4G-AAZT-01 2 223161877 223161877 G T PAX3 Missense_Mutation p.N47K 0.55 deleterious(0) possibly_damaging(0.715) TCGA-4G-AAZT-01 2 226447614 226447614 C T NYAP2 Missense_Mutation p.T494I 0.38 deleterious(0.05) benign(0.407) TCGA-4G-AAZT-01 3 13383292 13383292 T G NUP210 Missense_Mutation p.N1062H 0.59 deleterious(0) benign(0) TCGA-4G-AAZT-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.38 tolerated(0.44) benign(0.085) TCGA-4G-AAZT-01 3 185798929 185798929 G A ETV5 Missense_Mutation p.R90W 0.08 deleterious(0) probably_damaging(1) TCGA-4G-AAZT-01 3 440009 440009 C G CHL1 Missense_Mutation p.T1065S 0.70 tolerated(0.34) possibly_damaging(0.46) TCGA-4G-AAZT-01 3 44778170 44778170 A G ZNF501 3'UTR 0.12 TCGA-4G-AAZT-01 3 52439916 52439916 T G BAP1 Missense_Mutation p.T266P 0.59 deleterious(0.01) possibly_damaging(0.827) TCGA-4G-AAZT-01 3 52439930 52439930 T C BAP1 Splice_Site p.X262_splice 0.61 TCGA-4G-AAZT-01 3 52651496 52651496 G A PBRM1 Nonsense_Mutation p.R534* 0.14 TCGA-4G-AAZT-01 4 106159232 106159232 T C TET2 Intron 0.13 TCGA-4G-AAZT-01 4 7044539 7044539 G T CCDC96 Missense_Mutation p.L43M 0.21 deleterious_low_confidence(0.05) unknown(0) TCGA-4G-AAZT-01 5 114506912 114506912 T C TRIM36 Intron 0.11 TCGA-4G-AAZT-01 5 127641262 127641262 C A FBN2 Missense_Mutation p.G1872V 0.49 deleterious(0) probably_damaging(0.999) TCGA-4G-AAZT-01 5 140188641 140188641 C T PCDHA4 Silent p.R623R 0.10 TCGA-4G-AAZT-01 5 176812731 176812731 T A SLC34A1 5'UTR 0.44 TCGA-4G-AAZT-01 5 89999578 89999578 T A GPR98 Missense_Mutation p.F2751Y 0.04 possibly_damaging(0.827) TCGA-4G-AAZT-01 5 95099223 95099223 T G RHOBTB3 Missense_Mutation p.W354G 0.05 deleterious(0) probably_damaging(0.999) TCGA-4G-AAZT-01 6 29624928 29624928 A G MOG 5'Flank 0.40 TCGA-4G-AAZT-01 6 79679836 79679836 G C PHIP Missense_Mutation p.L1018V 0.69 deleterious(0) probably_damaging(0.978) TCGA-4G-AAZT-01 7 100014767 100014767 G A ZCWPW1 Missense_Mutation p.A134V 0.05 tolerated(0.52) benign(0.021) TCGA-4G-AAZT-01 7 131888134 131888134 C G PLXNA4 Missense_Mutation p.L781F 0.22 tolerated(1) benign(0.085) TCGA-4G-AAZT-01 7 141954901 141954901 G T PRSS58 Missense_Mutation p.T137N 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-4G-AAZT-01 7 64166846 64166846 C T ZNF107 Missense_Mutation p.T55M 0.05 deleterious(0.03) benign(0.004) TCGA-4G-AAZT-01 8 36793039 36793039 G T KCNU1 Silent p.V1017V 0.17 TCGA-4G-AAZT-01 8 39114753 39114753 C A ADAM32 Missense_Mutation p.L685I 0.10 deleterious(0.02) probably_damaging(0.931) TCGA-4G-AAZT-01 8 92346590 92346590 G A SLC26A7 Missense_Mutation p.S237N 0.43 deleterious(0.01) probably_damaging(0.982) TCGA-4G-AAZT-01 9 125865903 125865903 T C RABGAP1 3'UTR 0.42 TCGA-W5-AA2G-01 10 17164817 17164817 A G CUBN Silent p.C190C 0.27 TCGA-W5-AA2G-01 10 62332383 62332383 C T ANK3 5'UTR 0.14 TCGA-W5-AA2G-01 10 75435127 75435127 G A AGAP5 Missense_Mutation p.R431W 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-W5-AA2G-01 11 2424013 2424013 C T TSSC4 Silent p.S50S 0.32 TCGA-W5-AA2G-01 11 64060511 64060511 G A KCNK4 Silent p.L7L 0.08 TCGA-W5-AA2G-01 12 72024647 72024647 G A ZFC3H1 Silent p.C1186C 0.08 TCGA-W5-AA2G-01 12 95416118 95416118 C A NR2C1 Nonsense_Mutation p.E567* 0.15 TCGA-W5-AA2G-01 13 20660387 20660387 T G ZMYM2 3'UTR 0.35 TCGA-W5-AA2G-01 13 77619051 77619051 A T MYCBP2 3'UTR 0.09 TCGA-W5-AA2G-01 15 33795931 33795931 G A RYR3 Missense_Mutation p.G91S 0.23 benign(0.001) TCGA-W5-AA2G-01 15 34520740 34520740 C T EMC4 Silent p.L156L 0.08 TCGA-W5-AA2G-01 16 19131086 19131086 A C ITPRIPL2 3'UTR 0.35 TCGA-W5-AA2G-01 16 67650656 67650657 - CT CTCF Frame_Shift_Ins p.H322Lfs*12 0.27 TCGA-W5-AA2G-01 16 68395639 68395639 C T SMPD3 Missense_Mutation p.R578H 0.06 deleterious(0) probably_damaging(1) TCGA-W5-AA2G-01 16 69736743 69736743 C A NFAT5 3'UTR 0.09 TCGA-W5-AA2G-01 16 71884890 71884890 C A ATXN1L Missense_Mutation p.A416D 0.26 deleterious(0) probably_damaging(0.997) TCGA-W5-AA2G-01 16 83845619 83845619 T C HSBP1 3'UTR 0.40 TCGA-W5-AA2G-01 17 11896084 11896084 G A ZNF18 Silent p.S21S 0.14 TCGA-W5-AA2G-01 17 19645434 19645434 C G ALDH3A1 Missense_Mutation p.G191A 0.38 tolerated(1) benign(0.002) TCGA-W5-AA2G-01 17 38128387 38128387 C A GSDMA Missense_Mutation p.P221T 0.28 tolerated(0.22) probably_damaging(0.989) TCGA-W5-AA2G-01 17 40344493 40344493 C A GHDC Nonsense_Mutation p.E219* 0.26 TCGA-W5-AA2G-01 17 42294007 42294007 C A UBTF Missense_Mutation p.D42Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2G-01 17 63223693 63223693 G T RGS9 3'UTR 0.34 TCGA-W5-AA2G-01 19 16060302 16060302 C T OR10H4 Missense_Mutation p.T162M 0.26 tolerated(0.17) benign(0.009) TCGA-W5-AA2G-01 19 49518928 49518928 C A RUVBL2 Missense_Mutation p.L451I 0.19 tolerated(0.64) benign(0.02) TCGA-W5-AA2G-01 1 151553512 151553512 C T TUFT1 Missense_Mutation p.P368L 0.40 tolerated(0.38) benign(0.002) TCGA-W5-AA2G-01 1 158605703 158605703 C T SPTA1 Missense_Mutation p.R1811Q 0.35 deleterious(0.01) probably_damaging(1) TCGA-W5-AA2G-01 1 16462176 16462176 T A EPHA2 Nonsense_Mutation p.K468* 0.21 TCGA-W5-AA2G-01 1 171535854 171535854 C A PRRC2C Missense_Mutation p.P2142T 0.24 benign(0.14) TCGA-W5-AA2G-01 1 176659680 176659680 G A PAPPA2 Intron 0.36 TCGA-W5-AA2G-01 1 201286846 201286846 C T PKP1 Silent p.I331I 0.12 TCGA-W5-AA2G-01 1 205027755 205027755 G T CNTN2 Missense_Mutation p.V151L 0.37 tolerated(0.07) benign(0.07) TCGA-W5-AA2G-01 1 205044578 205044578 G A CNTN2 3'UTR 0.21 TCGA-W5-AA2G-01 1 237777618 237777618 G A RYR2 Silent p.T1730T 0.28 TCGA-W5-AA2G-01 1 35370532 35370532 C G DLGAP3 Silent p.G151G 0.31 TCGA-W5-AA2G-01 1 35824927 35824927 A C ZMYM4 Missense_Mutation p.K163Q 0.33 tolerated_low_confidence(0.21) benign(0.03) TCGA-W5-AA2G-01 1 67453457 67453457 T G MIER1 3'Flank 0.38 TCGA-W5-AA2G-01 22 37098604 37098604 T G CACNG2 Silent p.R6R 0.08 TCGA-W5-AA2G-01 22 41830680 41830680 G T TOB2 3'UTR 0.17 TCGA-W5-AA2G-01 22 43985975 43985975 T C EFCAB6 Missense_Mutation p.E1004G 0.06 deleterious(0) possibly_damaging(0.844) TCGA-W5-AA2G-01 2 170103393 170103393 C A LRP2 Missense_Mutation p.M1004I 0.23 possibly_damaging(0.871) TCGA-W5-AA2G-01 2 179701216 179701216 G A CCDC141 Intron 0.17 TCGA-W5-AA2G-01 2 204022462 204022462 G - NBEAL1 Frame_Shift_Del p.E1848Kfs*2 0.24 TCGA-W5-AA2G-01 2 20647979 20647979 G A RHOB 3'UTR 0.20 TCGA-W5-AA2G-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-W5-AA2G-01 2 223169394 223169394 G A CCDC140 3'UTR 0.19 TCGA-W5-AA2G-01 2 228221982 228221982 T A MFF 3'UTR 0.41 TCGA-W5-AA2G-01 2 234651670 234651670 C T UGT1A10 Intron 0.44 TCGA-W5-AA2G-01 2 97217620 97217620 C T ARID5A Missense_Mutation p.A452V 0.20 tolerated(0.28) benign(0.021) TCGA-W5-AA2G-01 3 126208213 126208213 C T UROC1 Silent p.P598P 0.25 TCGA-W5-AA2G-01 3 13860193 13860193 C A WNT7A 3'UTR 0.10 TCGA-W5-AA2G-01 3 48608557 48608557 G C COL7A1 Missense_Mutation p.P2381A 0.23 probably_damaging(0.928) TCGA-W5-AA2G-01 3 48731839 48731839 T G IP6K2 Intron 0.19 TCGA-W5-AA2G-01 4 103748035 103748035 A C UBE2D3 Intron 0.35 TCGA-W5-AA2G-01 4 147562498 147562499 - TA POU4F2 3'UTR 0.27 TCGA-W5-AA2G-01 5 140048015 140048015 C T WDR55 Missense_Mutation p.S103F 0.17 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2G-01 5 145890622 145890622 A T TCERG1 3'UTR 0.08 TCGA-W5-AA2G-01 6 111636540 111636540 T G REV3L Missense_Mutation p.K2799T 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-W5-AA2G-01 6 114182658 114182658 T C MARCKS 3'UTR 0.07 TCGA-W5-AA2G-01 6 26158350 26158350 A T HIST1H2BD 5'Flank 0.11 TCGA-W5-AA2G-01 6 43752584 43752584 A G VEGFA 3'Flank 0.15 TCGA-W5-AA2G-01 6 44221323 44221323 A G HSP90AB1 Silent p.E721E 0.09 TCGA-W5-AA2G-01 6 70964698 70964698 G A COL9A1 Missense_Mutation p.R545C 0.24 probably_damaging(0.935) TCGA-W5-AA2G-01 7 134632323 134632323 G A CALD1 Missense_Mutation p.G533S 0.11 deleterious(0.04) unknown(0) TCGA-W5-AA2G-01 7 154863304 154863304 G T HTR5A Missense_Mutation p.G232V 0.41 tolerated(0.11) possibly_damaging(0.904) TCGA-W5-AA2G-01 7 73030462 73030463 - T MLXIPL Frame_Shift_Ins p.L114Afs*40 0.21 TCGA-W5-AA2G-01 7 92818513 92818513 T C HEPACAM2 3'UTR 0.17 TCGA-W5-AA2G-01 8 133816130 133816130 C T PHF20L1 Nonsense_Mutation p.R192* 0.21 TCGA-W5-AA2G-01 9 18675858 18675858 C T ADAMTSL1 Silent p.D363D 0.33 TCGA-W5-AA2G-01 X 105201278 105201278 T A NRK 3'UTR 0.09 TCGA-W5-AA2G-01 X 138642998 138642998 A G F9 Silent p.K274K 0.11 TCGA-W5-AA2G-01 X 138899055 138899055 A G ATP11C Silent p.L98L 0.03 TCGA-W5-AA2G-01 X 140714034 140714034 A - RP1-171K16.5 RNA 0.13 TCGA-W5-AA2G-01 X 18924875 18924875 G A PHKA2 Silent p.I885I 0.08 TCGA-W5-AA2G-01 X 75650880 75650880 A T MAGEE1 Missense_Mutation p.R853W 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-W5-AA2H-01 17 8350192 8350192 G A NDEL1 Missense_Mutation p.A121T 0.09 deleterious(0.03) benign(0.134) TCGA-W5-AA2H-01 1 211921199 211921199 A T LPGAT1 3'UTR 0.09 TCGA-W5-AA2H-01 1 26691514 26691514 A G ZNF683 Missense_Mutation p.C175R 0.11 tolerated(0.13) benign(0.077) TCGA-W5-AA2H-01 2 27670404 27670404 G A IFT172 Missense_Mutation p.A1546V 0.18 deleterious(0.03) possibly_damaging(0.499) TCGA-W5-AA2H-01 2 30482097 30482097 C T LBH 3'UTR 0.10 TCGA-W5-AA2H-01 5 36877096 36877098 AGG - NIPBL 5'UTR 0.18 TCGA-W5-AA2H-01 6 157522560 157522560 G A ARID1B Missense_Mutation p.G1611D 0.08 probably_damaging(0.999) TCGA-W5-AA2H-01 8 41788230 41788230 A G KAT6A 3'UTR 0.33 TCGA-W5-AA2I-01 10 13337503 13337503 G A PHYH Missense_Mutation p.R80C 0.26 tolerated(0.1) benign(0.082) TCGA-W5-AA2I-01 11 125359627 125359627 C G FEZ1 Missense_Mutation p.R16P 0.47 tolerated(0.19) probably_damaging(0.992) TCGA-W5-AA2I-01 11 1256439 1256439 T G MUC5B Missense_Mutation p.Y919D 0.31 unknown(0) TCGA-W5-AA2I-01 11 1273681 1273681 C T MUC5B Missense_Mutation p.P4991L 0.40 unknown(0) TCGA-W5-AA2I-01 11 2416708 2416708 C T CD81 Silent p.D139D 0.08 TCGA-W5-AA2I-01 12 11183199 11183199 T G TAS2R31 Missense_Mutation p.M246L 0.04 tolerated(0.09) benign(0) TCGA-W5-AA2I-01 12 116398007 116398007 A C MED13L 3'UTR 0.36 TCGA-W5-AA2I-01 12 49918486 49918486 A G SPATS2 Missense_Mutation p.Y378C 0.40 deleterious(0) probably_damaging(1) TCGA-W5-AA2I-01 12 50503925 50503925 C A GPD1 3'UTR 0.38 TCGA-W5-AA2I-01 14 101201136 101201136 A C DLK1 Missense_Mutation p.Q352P 0.53 deleterious(0.02) benign(0.332) TCGA-W5-AA2I-01 15 26793037 26793037 A C GABRB3 Missense_Mutation p.L442R 0.14 deleterious(0) probably_damaging(0.997) TCGA-W5-AA2I-01 15 35082738 35082738 G A ACTC1 Missense_Mutation p.R337C 0.49 deleterious_low_confidence(0.01) benign(0.136) TCGA-W5-AA2I-01 15 43244513 43244513 C T UBR1 Missense_Mutation p.A1657T 0.29 tolerated(0.73) benign(0.292) TCGA-W5-AA2I-01 15 81212524 81212524 T A KIAA1199 Silent p.L629L 0.09 TCGA-W5-AA2I-01 16 3119300 3119304 GGGGA CGGGGG IL32 Frame_Shift_Ins p.G171Rfs*13 0.17 TCGA-W5-AA2I-01 16 3729751 3729751 T C TRAP1 Missense_Mutation p.N171S 0.33 deleterious(0.03) probably_damaging(0.96) TCGA-W5-AA2I-01 16 74629 74629 G A WASIR2 RNA 0.38 TCGA-W5-AA2I-01 16 88500278 88500278 G T ZNF469 Missense_Mutation p.D2106Y 0.15 possibly_damaging(0.839) TCGA-W5-AA2I-01 17 27076180 27076180 T G TRAF4 Missense_Mutation p.F333C 0.06 tolerated(0.16) benign(0.039) TCGA-W5-AA2I-01 17 28772983 28772983 T C CPD Missense_Mutation p.S940P 0.38 tolerated(0.26) probably_damaging(0.997) TCGA-W5-AA2I-01 17 40010293 40010293 T C KLHL11 Missense_Mutation p.D609G 0.45 tolerated(0.43) benign(0.134) TCGA-W5-AA2I-01 17 56540279 56540279 G A HSF5 Missense_Mutation p.P469L 0.44 deleterious(0.04) probably_damaging(0.948) TCGA-W5-AA2I-01 17 74946068 74946068 C T MGAT5B 3'UTR 0.31 TCGA-W5-AA2I-01 17 7578509 7578509 A G TP53 Missense_Mutation p.C141R 0.58 deleterious(0) probably_damaging(1) TCGA-W5-AA2I-01 17 77021985 77021985 C T C1QTNF1 Intron 0.07 TCGA-W5-AA2I-01 18 56963944 56963944 A T CPLX4 Missense_Mutation p.C157S 0.20 deleterious(0) probably_damaging(0.991) TCGA-W5-AA2I-01 19 10624541 10624541 C T S1PR5 Missense_Mutation p.G383S 0.11 tolerated(0.06) benign(0.002) TCGA-W5-AA2I-01 19 11457237 11457237 G A CCDC159 5'UTR 0.29 TCGA-W5-AA2I-01 19 23170160 23170160 C T ZNF728 Missense_Mutation p.G59E 0.28 tolerated(0.34) benign(0.065) TCGA-W5-AA2I-01 19 30934714 30934714 C T ZNF536 Missense_Mutation p.A82V 0.08 deleterious_low_confidence(0) benign(0.314) TCGA-W5-AA2I-01 19 33953903 33953903 T G PEPD Missense_Mutation p.E223D 0.41 deleterious(0.01) possibly_damaging(0.904) TCGA-W5-AA2I-01 19 44777811 44777812 AG - ZNF233 Frame_Shift_Del p.R334Sfs*27 0.28 TCGA-W5-AA2I-01 1 16451813 16451813 T A EPHA2 Missense_Mutation p.D943V 0.56 deleterious(0) probably_damaging(0.965) TCGA-W5-AA2I-01 1 179983051 179983051 C T CEP350 Missense_Mutation p.S488L 0.33 benign(0.088) TCGA-W5-AA2I-01 1 203148988 203148988 G A CHI3L1 Silent p.R304R 0.42 TCGA-W5-AA2I-01 1 220151958 220151958 T A EPRS Missense_Mutation p.N1338I 0.33 deleterious(0.02) benign(0.085) TCGA-W5-AA2I-01 1 43317239 43317239 A T ZNF691 Missense_Mutation p.S235C 0.23 tolerated(0.11) probably_damaging(0.997) TCGA-W5-AA2I-01 1 64603123 64603123 G A ROR1 Missense_Mutation p.R185H 0.07 tolerated(0.07) benign(0.082) TCGA-W5-AA2I-01 1 87574859 87574860 - G HS2ST1 3'UTR 0.33 TCGA-W5-AA2I-01 20 62577877 62577877 G A UCKL1 Missense_Mutation p.T78I 0.19 deleterious(0.02) probably_damaging(0.915) TCGA-W5-AA2I-01 2 11586354 11586354 G A E2F6 3'UTR 0.17 TCGA-W5-AA2I-01 2 131803534 131803534 C A ARHGEF4 Intron 0.34 TCGA-W5-AA2I-01 2 182542721 182542721 C T NEUROD1 Silent p.P289P 0.25 TCGA-W5-AA2I-01 2 217315693 217315693 G A SMARCAL1 Missense_Mutation p.R659H 0.42 deleterious(0) probably_damaging(0.992) TCGA-W5-AA2I-01 2 222290054 222290054 A G EPHA4 3'UTR 0.38 TCGA-W5-AA2I-01 2 230672523 230672523 C G TRIP12 Missense_Mutation p.K751N 0.28 tolerated(0.19) benign(0.306) TCGA-W5-AA2I-01 2 238289918 238289918 G A COL6A3 Missense_Mutation p.R513W 0.15 probably_damaging(0.999) TCGA-W5-AA2I-01 3 108072349 108072349 T - HHLA2 Frame_Shift_Del p.I47Kfs*14 0.26 TCGA-W5-AA2I-01 3 154836538 154836538 G A MME Missense_Mutation p.D220N 0.37 deleterious(0.01) probably_damaging(1) TCGA-W5-AA2I-01 3 52621438 52621439 - AAT PBRM1 In_Frame_Ins p.V992_F993insL 0.64 TCGA-W5-AA2I-01 3 86010630 86010630 T C CADM2 Missense_Mutation p.V261A 0.64 deleterious(0.03) possibly_damaging(0.888) TCGA-W5-AA2I-01 4 100871393 100871393 C T H2AFZ 5'UTR 0.27 TCGA-W5-AA2I-01 4 177114178 177114178 G A SPATA4 Missense_Mutation p.T133I 0.34 deleterious(0) benign(0.399) TCGA-W5-AA2I-01 4 74279212 74279212 C - ALB Frame_Shift_Del p.L307Cfs*23 0.35 TCGA-W5-AA2I-01 5 127624882 127624882 C A FBN2 Nonsense_Mutation p.G2192* 0.27 TCGA-W5-AA2I-01 5 96504525 96504525 C A RIOK2 Missense_Mutation p.D271Y 0.41 deleterious(0.04) benign(0.142) TCGA-W5-AA2I-01 6 39851523 39851523 G A DAAM2 Intron 0.45 TCGA-W5-AA2I-01 6 4955432 4955432 C T CDYL 3'Flank 0.11 TCGA-W5-AA2I-01 7 128315770 128315770 T C FAM71F2 Silent p.S74S 0.47 TCGA-W5-AA2I-01 7 129067662 129067662 G C AHCYL2 3'UTR 0.38 TCGA-W5-AA2I-01 7 138978118 138978118 C G UBN2 Silent p.P1270P 0.31 TCGA-W5-AA2I-01 7 42000951 42000951 G A GLI3 3'UTR 0.38 TCGA-W5-AA2I-01 7 82595713 82595713 C G PCLO Missense_Mutation p.G1131R 0.14 unknown(0) TCGA-W5-AA2I-01 8 11412317 11412317 C T BLK Missense_Mutation p.R180C 0.41 deleterious(0) possibly_damaging(0.889) TCGA-W5-AA2I-01 8 133153423 133153423 C T KCNQ3 Missense_Mutation p.R473H 0.36 deleterious(0.02) possibly_damaging(0.58) TCGA-W5-AA2I-01 8 88886183 88886183 G A DCAF4L2 Missense_Mutation p.P6L 0.36 tolerated(1) benign(0) TCGA-W5-AA2I-01 X 32361350 32361350 A T DMD Nonsense_Mutation p.Y1880* 0.75 TCGA-W5-AA2I-01 X 51640334 51640334 A T MAGED1 Nonsense_Mutation p.K541* 0.47 TCGA-W5-AA2I-01 X 78217121 78217121 T C P2RY10 3'UTR 0.68 TCGA-W5-AA2I-01 X 91133148 91133148 G A PCDH11X Missense_Mutation p.E637K 0.83 deleterious(0.02) possibly_damaging(0.842) TCGA-W5-AA2O-01 10 123278298 123278299 - GAA FGFR2 In_Frame_Ins p.F328dup 0.82 TCGA-W5-AA2O-01 10 27962643 27962643 T - MKX 3'UTR 0.24 TCGA-W5-AA2O-01 11 18955600 18955600 C T MRGPRX1 Silent p.V244V 0.28 TCGA-W5-AA2O-01 11 92532860 92532860 T C FAT3 Silent p.P2227P 0.08 TCGA-W5-AA2O-01 12 130184567 130184567 T C TMEM132D Silent p.T252T 0.30 TCGA-W5-AA2O-01 12 130184568 130184568 G C TMEM132D Missense_Mutation p.T252R 0.32 tolerated(0.07) benign(0.142) TCGA-W5-AA2O-01 12 43770341 43770341 C T ADAMTS20 Missense_Mutation p.C1704Y 0.32 deleterious(0) probably_damaging(1) TCGA-W5-AA2O-01 12 49426581 49426581 C A KMT2D Missense_Mutation p.Q3969H 0.21 unknown(0) TCGA-W5-AA2O-01 12 49426582 49426582 T A KMT2D Missense_Mutation p.Q3969L 0.21 unknown(0) TCGA-W5-AA2O-01 12 53070970 53070970 T G KRT1 Splice_Site p.X377_splice 0.35 TCGA-W5-AA2O-01 12 55725675 55725675 C A OR6C3 Missense_Mutation p.S64Y 0.40 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-W5-AA2O-01 12 966367 966367 A G WNK1 Missense_Mutation p.E451G 0.37 deleterious(0) unknown(0) TCGA-W5-AA2O-01 13 21714709 21714709 C T SAP18 Silent p.V6V 0.31 TCGA-W5-AA2O-01 13 42873939 42873939 A C AKAP11 Missense_Mutation p.S353R 0.57 deleterious(0) probably_damaging(0.997) TCGA-W5-AA2O-01 14 89079369 89079369 A G ZC3H14 3'UTR 0.53 TCGA-W5-AA2O-01 15 79589712 79589712 C T ANKRD34C 3'UTR 0.08 TCGA-W5-AA2O-01 16 88721635 88721635 C T MVD Missense_Mutation p.R290H 0.30 tolerated(0.05) benign(0.008) TCGA-W5-AA2O-01 17 36687810 36687811 - T SRCIN1 3'UTR 0.14 TCGA-W5-AA2O-01 17 42113063 42113063 G A LSM12 3'UTR 0.17 TCGA-W5-AA2O-01 17 7577554 7577573 TGCAGGAACTGTTACACATG - TP53 Frame_Shift_Del p.M237Gfs*20 0.44 TCGA-W5-AA2O-01 17 7577579 7577580 - T TP53 Nonsense_Mutation p.Y234* 0.59 TCGA-W5-AA2O-01 19 53302921 53302921 T C ZNF28 3'UTR 0.32 TCGA-W5-AA2O-01 19 56515295 56515295 C T NLRP5 Silent p.T92T 0.31 TCGA-W5-AA2O-01 19 8191217 8191217 G A FBN3 Missense_Mutation p.R857W 0.36 deleterious(0) probably_damaging(0.967) TCGA-W5-AA2O-01 19 9072960 9072960 T C MUC16 Missense_Mutation p.N4829S 0.35 unknown(0) TCGA-W5-AA2O-01 1 108247684 108247684 C A VAV3 Splice_Site p.X501_splice 0.38 TCGA-W5-AA2O-01 1 155952897 155952897 C T ARHGEF2 5'Flank 0.40 TCGA-W5-AA2O-01 1 9027751 9027751 A G CA6 Missense_Mutation p.Q202R 0.79 tolerated(1) benign(0.003) TCGA-W5-AA2O-01 21 45938574 45938574 G A C21orf90 Silent p.S60S 0.48 TCGA-W5-AA2O-01 22 41911822 41911822 G A ACO2 Missense_Mutation p.D246N 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-W5-AA2O-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.53 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-W5-AA2O-01 2 226447575 226447575 C A NYAP2 Nonsense_Mutation p.S481* 0.34 TCGA-W5-AA2O-01 2 48896871 48896871 C T STON1-GTF2A1L Missense_Mutation p.S1034F 0.43 tolerated(0.19) benign(0.006) TCGA-W5-AA2O-01 4 146055842 146055842 G T OTUD4 3'UTR 0.12 TCGA-W5-AA2O-01 4 176555898 176555898 T A GPM6A 3'UTR 0.52 TCGA-W5-AA2O-01 4 187542176 187542176 G A FAT1 Missense_Mutation p.P1855L 0.74 probably_damaging(1) TCGA-W5-AA2O-01 4 1950219 1950219 C T WHSC1 Intron 0.16 TCGA-W5-AA2O-01 5 121362644 121362644 A T SRFBP1 Silent p.P371P 0.46 TCGA-W5-AA2O-01 5 22144060 22144060 A - CDH12 Intron 0.33 TCGA-W5-AA2O-01 6 30025956 30025956 C A ZNRD1 5'Flank 0.51 TCGA-W5-AA2O-01 6 7189542 7189542 G T RREB1 Missense_Mutation p.G138W 0.50 deleterious(0) probably_damaging(1) TCGA-W5-AA2O-01 7 45123681 45123681 C T NACAD Missense_Mutation p.V700M 0.19 tolerated(0.11) possibly_damaging(0.887) TCGA-W5-AA2O-01 7 56174170 56174170 G A CHCHD2 5'UTR 0.29 TCGA-W5-AA2O-01 8 52321348 52321348 G A PXDNL Nonsense_Mutation p.R946* 0.19 TCGA-W5-AA2O-01 9 117105995 117105995 C T AKNA Silent p.Q1250Q 0.34 TCGA-W5-AA2O-01 9 125588973 125588973 G A PDCL Nonsense_Mutation p.R32* 0.33 TCGA-W5-AA2O-01 9 130213426 130213426 C T RPL12 Intron 0.11 TCGA-W5-AA2Q-01 10 3124594 3124594 G A PFKP Missense_Mutation p.V43I 0.40 deleterious(0.04) possibly_damaging(0.502) TCGA-W5-AA2Q-01 10 31791305 31791305 G A ZEB1 Missense_Mutation p.E118K 0.06 deleterious(0.01) probably_damaging(0.995) TCGA-W5-AA2Q-01 10 35929045 35929045 G C FZD8 Missense_Mutation p.S438W 0.44 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2Q-01 10 43014958 43014958 C A ZNF37BP RNA 0.20 TCGA-W5-AA2Q-01 10 73610980 73610980 G C PSAP 5'UTR 0.22 TCGA-W5-AA2Q-01 11 101857706 101857706 T C KIAA1377 Missense_Mutation p.C1060R 0.44 deleterious(0.01) probably_damaging(0.963) TCGA-W5-AA2Q-01 11 107462568 107462568 T C AP000889.3 Missense_Mutation p.S29P 0.48 tolerated_low_confidence(0.34) possibly_damaging(0.82) TCGA-W5-AA2Q-01 11 5537616 5537616 C T UBQLNL Missense_Mutation p.G19D 0.54 tolerated(0.31) benign(0.042) TCGA-W5-AA2Q-01 11 60687384 60687384 C T TMEM109 Silent p.T73T 0.11 TCGA-W5-AA2Q-01 12 44926453 44926453 C T NELL2 Missense_Mutation p.C622Y 0.38 deleterious(0) probably_damaging(0.993) TCGA-W5-AA2Q-01 12 83289597 83289597 A G TMTC2 Missense_Mutation p.R219G 0.43 tolerated(0.1) benign(0.001) TCGA-W5-AA2Q-01 13 110406853 110406853 A C IRS2 3'UTR 0.57 TCGA-W5-AA2Q-01 14 102891358 102891358 G T TECPR2 Missense_Mutation p.K227N 0.41 tolerated(0.05) probably_damaging(0.999) TCGA-W5-AA2Q-01 14 68195982 68195982 T A RDH12 Missense_Mutation p.C245S 0.31 tolerated(0.47) benign(0.03) TCGA-W5-AA2Q-01 14 92047145 92047145 T A CATSPERB 3'UTR 0.43 TCGA-W5-AA2Q-01 16 11859523 11859523 T C ZC3H7A Missense_Mutation p.E514G 0.26 deleterious(0.04) benign(0.287) TCGA-W5-AA2Q-01 16 30007577 30007577 G A HIRIP3 5'UTR 0.15 TCGA-W5-AA2Q-01 16 31471168 31471169 - C ARMC5 Frame_Shift_Ins p.A110Rfs*9 0.24 TCGA-W5-AA2Q-01 16 74505136 74505136 T A GLG1 Missense_Mutation p.I722L 0.45 deleterious(0.05) possibly_damaging(0.668) TCGA-W5-AA2Q-01 16 89662902 89662902 C T CPNE7 Missense_Mutation p.A592V 0.09 tolerated(0.1) benign(0.187) TCGA-W5-AA2Q-01 17 21101947 21101947 G A TMEM11 Missense_Mutation p.T90I 0.46 tolerated(0.54) benign(0.008) TCGA-W5-AA2Q-01 17 39114828 39114828 G T KRT39 3'UTR 0.18 TCGA-W5-AA2Q-01 17 5138043 5138043 G T SCIMP Missense_Mutation p.T3N 0.20 tolerated_low_confidence(0.46) benign(0.126) TCGA-W5-AA2Q-01 17 66244575 66244575 C T AMZ2 5'UTR 0.21 TCGA-W5-AA2Q-01 18 21437935 21437935 G C LAMA3 Missense_Mutation p.G1422R 0.35 possibly_damaging(0.866) TCGA-W5-AA2Q-01 19 11230846 11230846 T C LDLR Silent p.L642L 0.51 TCGA-W5-AA2Q-01 19 49183517 49183517 C T RN7SL345P 5'Flank 0.44 TCGA-W5-AA2Q-01 19 51918278 51918278 G C SIGLEC10 Missense_Mutation p.P472R 0.42 deleterious(0) probably_damaging(0.998) TCGA-W5-AA2Q-01 19 6678260 6678260 T C C3 Missense_Mutation p.I1585V 0.44 tolerated(0.27) benign(0.076) TCGA-W5-AA2Q-01 19 9068625 9068625 C - MUC16 Frame_Shift_Del p.R6274Lfs*6 0.32 TCGA-W5-AA2Q-01 1 147096004 147096004 C T BCL9 Silent p.G1175G 0.48 TCGA-W5-AA2Q-01 1 161206261 161206261 T G NR1I3 Missense_Mutation p.K32T 0.10 deleterious(0) probably_damaging(0.973) TCGA-W5-AA2Q-01 1 24147070 24147070 G A HMGCL Missense_Mutation p.S25F 0.14 tolerated(0.18) benign(0.094) TCGA-W5-AA2Q-01 1 246939562 246939562 T G RP11-439E19.10 3'Flank 0.50 TCGA-W5-AA2Q-01 2 223793606 223793606 G A ACSL3 Missense_Mutation p.G498R 0.11 deleterious(0) probably_damaging(1) TCGA-W5-AA2Q-01 2 232070973 232070973 G A ARMC9 Missense_Mutation p.E8K 0.19 deleterious(0.01) possibly_damaging(0.895) TCGA-W5-AA2Q-01 2 29296998 29296998 G T C2orf71 Missense_Mutation p.L44M 0.15 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2Q-01 2 97530504 97530504 C T SEMA4C Missense_Mutation p.M300I 0.12 tolerated(0.15) benign(0) TCGA-W5-AA2Q-01 3 142168326 142168326 G A ATR Missense_Mutation p.A2627V 0.50 deleterious(0) probably_damaging(1) TCGA-W5-AA2Q-01 3 179458139 179458139 G A USP13 Silent p.L453L 0.18 TCGA-W5-AA2Q-01 3 30686282 30686282 G A TGFBR2 Silent p.K71K 0.34 TCGA-W5-AA2Q-01 3 36896814 36896814 C A TRANK1 Missense_Mutation p.A1423S 0.27 deleterious(0) probably_damaging(0.983) TCGA-W5-AA2Q-01 3 48712059 48712059 G T NCKIPSD Missense_Mutation p.T696N 0.24 tolerated(0.41) benign(0.017) TCGA-W5-AA2Q-01 4 106604263 106604263 G T INTS12 Nonsense_Mutation p.S339* 0.21 TCGA-W5-AA2Q-01 4 110788888 110788888 T A LRIT3 Missense_Mutation p.D227E 0.44 tolerated(0.07) probably_damaging(1) TCGA-W5-AA2Q-01 4 55956163 55956163 C T KDR Missense_Mutation p.R1051Q 0.28 deleterious(0) probably_damaging(1) TCGA-W5-AA2Q-01 5 179041385 179041385 G A HNRNPH1 3'UTR 0.09 TCGA-W5-AA2Q-01 5 35965666 35965666 T C UGT3A1 Missense_Mutation p.D222G 0.49 deleterious(0.02) possibly_damaging(0.656) TCGA-W5-AA2Q-01 6 109769503 109769503 C T MICAL1 Silent p.V586V 0.47 TCGA-W5-AA2Q-01 6 111912799 111912799 G - TRAF3IP2 Frame_Shift_Del p.P164Lfs*32 0.14 TCGA-W5-AA2Q-01 6 32410347 32410347 C T HLA-DRA Missense_Mutation p.R69W 0.33 tolerated(0.09) possibly_damaging(0.604) TCGA-W5-AA2Q-01 6 52869270 52869270 A T ICK 3'UTR 0.77 TCGA-W5-AA2Q-01 6 71195946 71195946 A G FAM135A Intron 0.27 TCGA-W5-AA2Q-01 7 1097145 1097145 G A GPR146 5'UTR 0.07 TCGA-W5-AA2Q-01 7 84628735 84628735 T C SEMA3D 3'UTR 0.19 TCGA-W5-AA2Q-01 8 133627332 133627332 G A LRRC6 Missense_Mutation p.S309F 0.36 tolerated(0.06) benign(0.014) TCGA-W5-AA2Q-01 8 17447006 17447006 C T PDGFRL Missense_Mutation p.R29C 0.06 deleterious(0) possibly_damaging(0.808) TCGA-W5-AA2Q-01 8 41550703 41550703 G T ANK1 Silent p.A1224A 0.50 TCGA-W5-AA2Q-01 9 127915867 127915867 C T PPP6C Nonsense_Mutation p.W242* 0.45 TCGA-W5-AA2Q-01 9 77470478 77470478 A T TRPM6 Nonsense_Mutation p.C39* 0.48 TCGA-W5-AA2Q-01 X 70149683 70149683 G T SLC7A3 Silent p.G55G 1.00 TCGA-W5-AA2R-01 10 18829219 18829219 T G CACNB2 3'UTR 0.37 TCGA-W5-AA2R-01 15 66729174 66729174 G C MAP2K1 Missense_Mutation p.G128R 0.25 deleterious(0) probably_damaging(1) TCGA-W5-AA2R-01 17 28643709 28643709 C A TMIGD1 Splice_Site p.X262_splice 0.28 TCGA-W5-AA2R-01 17 7661812 7661812 G T DNAH2 Splice_Site p.X684_splice 0.21 TCGA-W5-AA2R-01 1 100573425 100573425 C A SASS6 Missense_Mutation p.D333Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2R-01 1 111663216 111663216 G A DRAM2 Nonsense_Mutation p.Q147* 0.10 TCGA-W5-AA2R-01 1 153946097 153946099 TTC - CREB3L4 In_Frame_Del p.L302del 0.44 TCGA-W5-AA2R-01 1 180166383 180166383 C G QSOX1 3'UTR 0.31 TCGA-W5-AA2R-01 1 227076607 227076607 G A PSEN2 Missense_Mutation p.G215D 0.09 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2R-01 21 34915391 34915391 C G SON 5'UTR 0.40 TCGA-W5-AA2R-01 2 10192850 10192850 G T KLF11 3'UTR 0.21 TCGA-W5-AA2R-01 2 106471558 106471558 C T NCK2 Silent p.Y13Y 0.23 TCGA-W5-AA2R-01 2 113147025 113147025 C T RGPD8 Missense_Mutation p.C1166Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-W5-AA2R-01 2 172188372 172188372 G T METTL8 Missense_Mutation p.S221Y 0.38 tolerated(0.1) benign(0.317) TCGA-W5-AA2R-01 2 210636741 210636741 C T UNC80 5'UTR 0.27 TCGA-W5-AA2R-01 2 225422373 225422373 T C CUL3 Intron 0.24 TCGA-W5-AA2R-01 2 27353427 27353427 T C ABHD1 Missense_Mutation p.S345P 0.08 tolerated(0.14) probably_damaging(0.958) TCGA-W5-AA2R-01 2 31178586 31178586 A T GALNT14 Silent p.I189I 0.22 TCGA-W5-AA2R-01 2 55074664 55074664 A T EML6 Missense_Mutation p.N364I 0.17 deleterious(0.03) benign(0.065) TCGA-W5-AA2R-01 2 64120559 64120559 T G VPS54 3'UTR 0.12 TCGA-W5-AA2R-01 3 131756416 131756416 C T CPNE4 5'UTR 0.26 TCGA-W5-AA2R-01 3 188590442 188590442 C T LPP Missense_Mutation p.P534L 0.42 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2R-01 4 39472905 39472905 G C LIAS Missense_Mutation p.Q311H 0.18 deleterious(0) probably_damaging(0.95) TCGA-W5-AA2R-01 5 72386244 72386244 A G FCHO2 3'UTR 0.27 TCGA-W5-AA2R-01 5 93732013 93732013 T C KIAA0825 Missense_Mutation p.N1030S 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-W5-AA2R-01 6 111214916 111214916 C T AMD1 3'UTR 0.19 TCGA-W5-AA2R-01 6 28501977 28501977 T C GPX5 3'UTR 0.38 TCGA-W5-AA2R-01 6 6175067 6175067 G A F13A1 Missense_Mutation p.A498V 0.22 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2R-01 6 74227319 74227319 T A EEF1A1 3'UTR 0.44 TCGA-W5-AA2R-01 7 149981851 149981851 C T ACTR3C Silent p.P185P 0.11 TCGA-W5-AA2R-01 7 86521048 86521048 C G KIAA1324L Missense_Mutation p.A1008P 0.11 tolerated(0.06) probably_damaging(0.983) TCGA-W5-AA2R-01 8 38840515 38840515 G T HTRA4 Missense_Mutation p.V406L 0.34 deleterious(0.04) benign(0.083) TCGA-W5-AA2R-01 9 137735510 137735510 G A COL5A1 3'UTR 0.09 TCGA-W5-AA2R-01 9 39176053 39176053 G A CNTNAP3 Missense_Mutation p.R322W 0.18 deleterious(0.03) benign(0) TCGA-W5-AA2R-01 9 84608503 84608503 A G SPATA31D1 Missense_Mutation p.T1040A 0.17 tolerated(0.14) benign(0.122) TCGA-W5-AA2R-01 X 115303767 115303767 T C AGTR2 Silent p.V78V 0.14 TCGA-W5-AA2R-01 X 43652720 43652720 C T MAOB Missense_Mutation p.G292S 0.23 deleterious(0) probably_damaging(0.988) TCGA-W5-AA2T-01 10 106074385 106074385 G A ITPRIP Silent p.H475H 0.50 TCGA-W5-AA2T-01 10 124516407 124516407 G A DMBT1P1 RNA 0.12 TCGA-W5-AA2T-01 10 89505887 89505887 C T PAPSS2 3'UTR 0.25 TCGA-W5-AA2T-01 11 62490357 62490357 T C HNRNPUL2 Missense_Mutation p.M304V 0.45 tolerated(1) benign(0.001) TCGA-W5-AA2T-01 12 120936256 120936256 C T DYNLL1 3'UTR 0.35 TCGA-W5-AA2T-01 12 54778336 54778336 C T ZNF385A Missense_Mutation p.R8Q 0.40 tolerated(1) probably_damaging(0.998) TCGA-W5-AA2T-01 12 97041772 97041772 A C C12orf55 Missense_Mutation p.K1556T 0.38 tolerated(0.24) benign(0.157) TCGA-W5-AA2T-01 13 111522056 111522056 C T LINC00346 Missense_Mutation p.A28T 0.23 benign(0) TCGA-W5-AA2T-01 15 76632660 76632661 - A ISL2 Frame_Shift_Ins p.Q187Afs*98 0.41 TCGA-W5-AA2T-01 15 86311759 86311759 G A KLHL25 Missense_Mutation p.A428V 0.43 deleterious(0) possibly_damaging(0.494) TCGA-W5-AA2T-01 15 89424838 89424838 C T HAPLN3 Silent p.P81P 0.53 TCGA-W5-AA2T-01 15 93008190 93008190 C A ST8SIA2 3'UTR 0.50 TCGA-W5-AA2T-01 17 33749505 33749505 G A SLFN12 Silent p.A181A 0.25 TCGA-W5-AA2T-01 17 80790422 80790422 C T ZNF750 5'UTR 0.41 TCGA-W5-AA2T-01 19 19468226 19468226 C G MAU2 3'UTR 0.60 TCGA-W5-AA2T-01 19 38995497 38995497 A G RYR1 Missense_Mutation p.K2726R 0.07 benign(0.094) TCGA-W5-AA2T-01 19 50657879 50657879 C T IZUMO2 Missense_Mutation p.V201I 0.42 tolerated(0.36) benign(0.001) TCGA-W5-AA2T-01 19 51446789 51446789 A C KLK5 3'UTR 0.48 TCGA-W5-AA2T-01 19 52222503 52222503 A G HAS1 Missense_Mutation p.Y220H 0.52 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2T-01 19 55019357 55019357 G A LAIR2 Missense_Mutation p.G108R 0.54 tolerated(0.54) benign(0.008) TCGA-W5-AA2T-01 19 613928 613928 C T HCN2 Silent p.S634S 0.62 TCGA-W5-AA2T-01 1 197115508 197115508 C G ASPM Silent p.P20P 0.12 TCGA-W5-AA2T-01 1 205571641 205571641 C G MFSD4 3'UTR 0.29 TCGA-W5-AA2T-01 1 235506825 235506825 C T GGPS1 3'UTR 0.37 TCGA-W5-AA2T-01 1 240072089 240072089 A C CHRM3 Silent p.S446S 0.35 TCGA-W5-AA2T-01 1 29189631 29189631 G A OPRD1 Missense_Mutation p.A319T 0.69 deleterious(0) possibly_damaging(0.883) TCGA-W5-AA2T-01 1 53535704 53535704 C T PODN Silent p.P107P 0.55 TCGA-W5-AA2T-01 1 70504282 70504282 T C LRRC7 Silent p.P887P 0.07 TCGA-W5-AA2T-01 1 74957851 74957851 A G TNNI3K Missense_Mutation p.N852S 0.32 tolerated_low_confidence(1) benign(0) TCGA-W5-AA2T-01 20 57769548 57769548 G A ZNF831 Silent p.T1158T 0.42 TCGA-W5-AA2T-01 20 61512147 61512147 C G DIDO1 Missense_Mutation p.G1721R 0.38 possibly_damaging(0.839) TCGA-W5-AA2T-01 21 10941922 10941922 T A TPTE Nonsense_Mutation p.R261* 0.10 TCGA-W5-AA2T-01 21 43857670 43857670 C T UBASH3A Missense_Mutation p.T489M 0.47 deleterious(0) probably_damaging(0.997) TCGA-W5-AA2T-01 22 25115326 25115326 C T PIWIL3 3'UTR 0.18 TCGA-W5-AA2T-01 2 105897081 105897081 G A TGFBRAP1 Silent p.Y407Y 0.33 TCGA-W5-AA2T-01 2 131797699 131797699 C G ARHGEF4 Silent p.T286T 0.16 TCGA-W5-AA2T-01 2 137814609 137814609 G A THSD7B Silent p.L253L 0.26 TCGA-W5-AA2T-01 2 160605293 160605293 G A MARCH7 Missense_Mutation p.D498N 0.52 deleterious(0.01) probably_damaging(0.996) TCGA-W5-AA2T-01 2 179528071 179528071 C G TTN Missense_Mutation p.E12208Q 0.50 TCGA-W5-AA2T-01 2 60687187 60687187 A - BCL11A 3'UTR 0.11 TCGA-W5-AA2T-01 2 79253292 79253292 C A REG3G Missense_Mutation p.Q25K 0.29 tolerated(0.17) benign(0.021) TCGA-W5-AA2T-01 3 88041745 88041745 A G HTR1F 3'UTR 0.81 TCGA-W5-AA2T-01 4 11401504 11401504 G A HS3ST1 Silent p.R42R 0.41 TCGA-W5-AA2T-01 4 134111487 134111487 G A PCDH10 3'UTR 0.29 TCGA-W5-AA2T-01 4 156136851 156136851 C T NPY2R 3'UTR 0.48 TCGA-W5-AA2T-01 4 178256872 178256872 G A NEIL3 Missense_Mutation p.M103I 0.47 tolerated(0.3) benign(0.002) TCGA-W5-AA2T-01 4 74276063 74276063 C T ALB Missense_Mutation p.S217F 0.45 deleterious(0.01) probably_damaging(0.925) TCGA-W5-AA2T-01 5 135498966 135498966 A T SMAD5 Missense_Mutation p.T221S 0.36 tolerated(0.26) benign(0.042) TCGA-W5-AA2T-01 5 5463258 5463258 C T KIAA0947 Nonsense_Mutation p.Q1271* 0.33 TCGA-W5-AA2T-01 5 71519605 71519605 C T MRPS27 Missense_Mutation p.D304N 0.53 tolerated(0.14) benign(0.079) TCGA-W5-AA2T-01 5 90052799 90052799 G A GPR98 Missense_Mutation p.A3921T 0.43 benign(0.012) TCGA-W5-AA2T-01 5 95242375 95242375 C A ELL2 Missense_Mutation p.S198I 0.48 tolerated(0.19) benign(0.01) TCGA-W5-AA2T-01 6 167570387 167570387 A C GPR31 Missense_Mutation p.D311E 0.79 tolerated(0.26) benign(0.002) TCGA-W5-AA2T-01 7 136699781 136699781 G A CHRM2 Missense_Mutation p.V57I 0.30 deleterious(0.03) probably_damaging(0.927) TCGA-W5-AA2T-01 7 17338839 17338839 G C AHR 5'UTR 0.12 TCGA-W5-AA2T-01 7 42000749 42000749 C A GLI3 3'UTR 0.40 TCGA-W5-AA2T-01 7 55750187 55750187 A G RNU6-389P 5'Flank 0.48 TCGA-W5-AA2T-01 8 67039583 67039583 C T TRIM55 Missense_Mutation p.P27L 0.34 deleterious(0) probably_damaging(1) TCGA-W5-AA2T-01 9 137710726 137710726 G A COL5A1 Silent p.P1457P 0.73 TCGA-W5-AA2T-01 9 16419547 16419547 C T BNC2 Missense_Mutation p.D914N 0.88 tolerated(0.19) possibly_damaging(0.476) TCGA-W5-AA2T-01 X 152615480 152615480 A G ZNF275 3'UTR 0.17 TCGA-W5-AA2T-01 X 66765910 66765910 G A AR Missense_Mutation p.E308K 0.79 deleterious_low_confidence(0.01) benign(0.108) TCGA-W5-AA2T-01 X 91874049 91874049 G C PCDH11X 3'UTR 0.92 TCGA-W5-AA2U-01 10 24835906 24835906 A G KIAA1217 3'UTR 0.40 TCGA-W5-AA2U-01 11 113674003 113674003 C A USP28 Missense_Mutation p.K913N 0.53 tolerated(0.17) possibly_damaging(0.542) TCGA-W5-AA2U-01 11 123813668 123813668 C T OR6T1 Missense_Mutation p.R293H 0.77 deleterious(0) benign(0.297) TCGA-W5-AA2U-01 11 46529852 46529852 T C AMBRA1 Missense_Mutation p.Q653R 0.37 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-W5-AA2U-01 11 7614447 7614447 A T PPFIBP2 Missense_Mutation p.I122L 0.31 deleterious(0.01) probably_damaging(0.946) TCGA-W5-AA2U-01 11 78498091 78498091 G A TENM4 Silent p.C739C 0.38 TCGA-W5-AA2U-01 11 9042505 9042505 C G SCUBE2 3'UTR 0.44 TCGA-W5-AA2U-01 12 132530051 132530051 G T EP400 Missense_Mutation p.E2324D 0.16 unknown(0) TCGA-W5-AA2U-01 12 393307 393307 A T KDM5A 3'UTR 0.04 TCGA-W5-AA2U-01 12 42512815 42512815 C G GXYLT1 Missense_Mutation p.S158T 0.40 tolerated(0.13) benign(0.278) TCGA-W5-AA2U-01 12 50869876 50869876 C T LARP4 3'UTR 0.05 TCGA-W5-AA2U-01 12 53582215 53582215 A G ZNF740 3'UTR 0.44 TCGA-W5-AA2U-01 12 99106135 99106135 T C APAF1 Silent p.T960T 0.68 TCGA-W5-AA2U-01 13 37595675 37595675 G A SUPT20H Missense_Mutation p.P576S 0.67 tolerated(0.07) benign(0.323) TCGA-W5-AA2U-01 13 99554100 99554100 C T DOCK9 Missense_Mutation p.E479K 0.12 deleterious(0) possibly_damaging(0.843) TCGA-W5-AA2U-01 14 24729730 24729730 G T TGM1 Nonsense_Mutation p.S228* 0.71 TCGA-W5-AA2U-01 14 65210442 65210442 A G PLEKHG3 3'UTR 0.46 TCGA-W5-AA2U-01 15 32988766 32988766 A T SCG5 Nonsense_Mutation p.K199* 0.46 TCGA-W5-AA2U-01 15 34628712 34628712 C T SLC12A6 Missense_Mutation p.S57N 0.38 tolerated_low_confidence(0.1) probably_damaging(0.954) TCGA-W5-AA2U-01 15 43281074 43281074 C A UBR1 Missense_Mutation p.D1314Y 0.46 deleterious(0.01) probably_damaging(0.976) TCGA-W5-AA2U-01 15 52517156 52517156 G A MYO5C Missense_Mutation p.H1130Y 0.36 tolerated(0.17) benign(0.285) TCGA-W5-AA2U-01 15 88678415 88678415 C G NTRK3 Missense_Mutation p.G374A 0.32 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2U-01 16 28993745 28993745 G A SPNS1 Missense_Mutation p.R345H 0.30 deleterious(0) probably_damaging(0.988) TCGA-W5-AA2U-01 16 31470742 31470742 T C ARMC5 5'UTR 0.29 TCGA-W5-AA2U-01 16 50702829 50702829 G C SNX20 3'Flank 0.60 TCGA-W5-AA2U-01 16 71674961 71674961 T G MARVELD3 3'UTR 0.49 TCGA-W5-AA2U-01 16 81745195 81745195 A G CMIP 3'UTR 0.34 TCGA-W5-AA2U-01 17 20768654 20768654 G A CCDC144NL 3'UTR 0.20 TCGA-W5-AA2U-01 17 42293340 42293340 T G UBTF Silent p.T84T 0.13 TCGA-W5-AA2U-01 17 66878815 66878815 T G ABCA8 Silent p.P1211P 0.09 TCGA-W5-AA2U-01 19 10568639 10568639 C T PDE4A Missense_Mutation p.P321L 0.36 tolerated_low_confidence(0.39) benign(0.03) TCGA-W5-AA2U-01 19 11435412 11435412 T G RAB3D 3'UTR 0.49 TCGA-W5-AA2U-01 19 2037611 2037611 C A MKNK2 3'UTR 0.39 TCGA-W5-AA2U-01 19 3592906 3592906 G T GIPC3 3'UTR 0.44 TCGA-W5-AA2U-01 19 38698402 38698402 G A SIPA1L3 3'UTR 0.29 TCGA-W5-AA2U-01 19 45262071 45262071 G T BCL3 Nonsense_Mutation p.E384* 0.39 TCGA-W5-AA2U-01 19 8467101 8467101 G A RAB11B Missense_Mutation p.G123D 0.50 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W5-AA2U-01 1 10205034 10205034 G A UBE4B Nonsense_Mutation p.W800* 0.65 TCGA-W5-AA2U-01 1 156622711 156622711 C G BCAN Intron 0.42 TCGA-W5-AA2U-01 1 165513519 165513519 T C LRRC52 5'UTR 0.16 TCGA-W5-AA2U-01 1 198710997 198710997 G T PTPRC Splice_Site p.X802_splice 0.41 TCGA-W5-AA2U-01 1 22063114 22063114 C T USP48 Silent p.G332G 0.42 TCGA-W5-AA2U-01 1 223177391 223177391 G T DISP1 Missense_Mutation p.E884D 0.38 tolerated(0.39) benign(0.001) TCGA-W5-AA2U-01 1 34663014 34663014 G A C1orf94 Missense_Mutation p.S170N 0.44 tolerated(0.14) benign(0.037) TCGA-W5-AA2U-01 1 44085499 44085499 A G PTPRF Missense_Mutation p.Y1694C 0.36 deleterious(0) probably_damaging(1) TCGA-W5-AA2U-01 1 52498812 52498812 G T KTI12 Missense_Mutation p.L208I 0.31 tolerated(0.38) benign(0.199) TCGA-W5-AA2U-01 1 54474764 54474764 C A LDLRAD1 Missense_Mutation p.C170F 0.29 deleterious(0) probably_damaging(1) TCGA-W5-AA2U-01 1 70717265 70717265 A G SRSF11 3'UTR 0.33 TCGA-W5-AA2U-01 1 84880630 84880630 A - DNASE2B 3'UTR 0.45 TCGA-W5-AA2U-01 20 58564141 58564141 T C CDH26 Silent p.I402I 0.32 TCGA-W5-AA2U-01 20 60791534 60791534 G A HRH3 Missense_Mutation p.A289V 0.44 tolerated(0.34) benign(0.001) TCGA-W5-AA2U-01 21 27277339 27277339 G C APP Missense_Mutation p.P654A 0.52 tolerated(0.17) probably_damaging(0.999) TCGA-W5-AA2U-01 22 29913066 29913066 C A THOC5 Missense_Mutation p.A545S 0.13 tolerated(0.24) possibly_damaging(0.739) TCGA-W5-AA2U-01 22 30864800 30864800 C T SEC14L3 Intron 0.21 TCGA-W5-AA2U-01 22 41633412 41633412 T C CHADL Missense_Mutation p.N555S 0.32 deleterious(0) probably_damaging(1) TCGA-W5-AA2U-01 22 46501415 46501415 C T FLJ27365 Intron 0.08 TCGA-W5-AA2U-01 2 119599759 119599759 T A EN1 3'UTR 0.36 TCGA-W5-AA2U-01 2 165424895 165424895 C T GRB14 Intron 0.34 TCGA-W5-AA2U-01 2 198266713 198266713 C T SF3B1 Missense_Mutation p.G740E 0.31 deleterious(0.01) possibly_damaging(0.686) TCGA-W5-AA2U-01 2 208631288 208631288 A T FZD5 3'UTR 0.07 TCGA-W5-AA2U-01 2 212530115 212530115 T A ERBB4 Missense_Mutation p.S602C 0.05 deleterious(0.01) benign(0.011) TCGA-W5-AA2U-01 2 238990770 238990770 G A SCLY Missense_Mutation p.D241N 0.32 deleterious(0) probably_damaging(0.998) TCGA-W5-AA2U-01 2 238990809 238990809 G A SCLY Missense_Mutation p.E254K 0.35 tolerated(0.41) benign(0.006) TCGA-W5-AA2U-01 2 242741335 242741335 G A GAL3ST2 Missense_Mutation p.G87S 0.17 deleterious(0.05) possibly_damaging(0.894) TCGA-W5-AA2U-01 2 29366790 29366792 TGT - CLIP4 In_Frame_Del p.V290del 0.38 TCGA-W5-AA2U-01 2 45807033 45807033 G A SRBD1 Silent p.Y351Y 0.56 TCGA-W5-AA2U-01 2 54035592 54035592 C T ERLEC1 Missense_Mutation p.R346C 0.21 deleterious(0) possibly_damaging(0.717) TCGA-W5-AA2U-01 2 5836624 5836624 C T SOX11 3'UTR 0.36 TCGA-W5-AA2U-01 2 89309651 89309651 T C IGKV1-9 Missense_Mutation p.Q60R 0.35 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-W5-AA2U-01 3 11744451 11744451 C T VGLL4 Missense_Mutation p.E20K 0.66 tolerated(0.14) benign(0.002) TCGA-W5-AA2U-01 3 128060585 128060585 G A EEFSEC Silent p.R432R 0.25 TCGA-W5-AA2U-01 3 130287118 130287118 C A COL6A6 Missense_Mutation p.Q691K 0.39 tolerated(0.06) benign(0.03) TCGA-W5-AA2U-01 4 121957234 121957234 C T NDNF 3'UTR 0.45 TCGA-W5-AA2U-01 4 156137164 156137164 G C NPY2R 3'UTR 0.15 TCGA-W5-AA2U-01 4 2251831 2251831 C T MXD4 3'UTR 0.06 TCGA-W5-AA2U-01 4 38798332 38798332 G C TLR1 Missense_Mutation p.C707W 0.34 deleterious(0) probably_damaging(1) TCGA-W5-AA2U-01 4 88732730 88732732 GGA - IBSP In_Frame_Del p.G208del 0.38 TCGA-W5-AA2U-01 4 88997152 88997152 T A PKD2 3'UTR 0.48 TCGA-W5-AA2U-01 5 126666989 126666989 C T MEGF10 5'UTR 0.26 TCGA-W5-AA2U-01 5 139781730 139781730 G A ANKHD1 Missense_Mutation p.G60S 0.12 unknown(0) TCGA-W5-AA2U-01 5 140250727 140250727 G A PCDHA11 Missense_Mutation p.R680Q 0.23 tolerated_low_confidence(0.09) benign(0.042) TCGA-W5-AA2U-01 5 174157775 174157775 G A MSX2 3'UTR 0.22 TCGA-W5-AA2U-01 5 66391445 66391445 C G MAST4 Missense_Mutation p.S285W 0.43 probably_damaging(1) TCGA-W5-AA2U-01 5 74091907 74091907 G T FAM169A Missense_Mutation p.A403E 0.39 tolerated(0.71) benign(0.075) TCGA-W5-AA2U-01 5 74657496 74657497 - T HMGCR 3'UTR 0.20 TCGA-W5-AA2U-01 5 75969392 75969392 A T IQGAP2 Missense_Mutation p.I1063F 0.33 tolerated(0.35) benign(0.007) TCGA-W5-AA2U-01 5 96503500 96503500 C A RIOK2 Silent p.R356R 0.48 TCGA-W5-AA2U-01 6 16290801 16290801 T A GMPR Missense_Mutation p.M269K 0.37 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2U-01 6 29080455 29080455 T G OR2J3 Missense_Mutation p.L263R 0.46 deleterious(0) probably_damaging(1) TCGA-W5-AA2U-01 6 32337671 32337671 C T C6orf10 Intron 0.27 TCGA-W5-AA2U-01 6 65300622 65300622 G A EYS Missense_Mutation p.P1713L 0.37 tolerated_low_confidence(0.07) probably_damaging(0.988) TCGA-W5-AA2U-01 6 94068073 94068073 G A EPHA7 Missense_Mutation p.P297S 0.43 deleterious(0) possibly_damaging(0.674) TCGA-W5-AA2U-01 8 105510177 105510177 G A LRP12 Silent p.A201A 0.22 TCGA-W5-AA2U-01 8 133044207 133044207 G T OC90 Silent p.R318R 0.32 TCGA-W5-AA2U-01 8 144991673 144991673 C A PLEC Nonsense_Mutation p.E4243* 0.22 TCGA-W5-AA2U-01 8 22865461 22865461 C G RHOBTB2 Intron 0.50 TCGA-W5-AA2U-01 8 57076145 57076145 C G PLAG1 3'UTR 0.17 TCGA-W5-AA2U-01 8 69129946 69129946 G A PREX2 Missense_Mutation p.R1567Q 0.39 deleterious(0) probably_damaging(0.978) TCGA-W5-AA2U-01 9 41962084 41962084 A G RP11-204M4.2 RNA 0.34 TCGA-W5-AA2U-01 9 4685133 4685133 C T CDC37L1 Missense_Mutation p.A130V 0.07 tolerated(0.21) benign(0.009) TCGA-W5-AA2U-01 9 94487167 94487167 C T ROR2 Missense_Mutation p.V537I 0.78 tolerated(0.18) benign(0.119) TCGA-W5-AA2U-01 X 100646777 100646777 T G RPL36A-HNRNPH2 Nonsense_Mutation p.Y59* 0.24 TCGA-W5-AA2U-01 X 101822176 101822176 C T NXF4 RNA 0.44 TCGA-W5-AA2U-01 X 108641914 108641914 C A GUCY2F Silent p.T713T 0.13 TCGA-W5-AA2U-01 X 129201166 129201166 C A ELF4 Nonsense_Mutation p.G508* 0.29 TCGA-W5-AA2U-01 X 130222889 130222889 G A ARHGAP36 3'UTR 0.33 TCGA-W5-AA2U-01 X 134166535 134166535 C A FAM127A Missense_Mutation p.P41Q 0.26 deleterious(0) possibly_damaging(0.661) TCGA-W5-AA2U-01 X 134494603 134494603 C T ZNF449 Nonsense_Mutation p.R387* 0.42 TCGA-W5-AA2U-01 X 140995729 140995729 C A MAGEC1 Missense_Mutation p.P847T 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-W5-AA2U-01 X 14748367 14748367 C T GLRA2 Silent p.S373S 0.33 TCGA-W5-AA2U-01 X 152482527 152482528 CT G MAGEA1 Frame_Shift_Del p.E161Dfs*15 0.28 TCGA-W5-AA2U-01 X 2799129 2799129 G A GYG2 Missense_Mutation p.E461K 0.41 tolerated(0.33) benign(0.007) TCGA-W5-AA2U-01 X 37028705 37028705 A T FAM47C Missense_Mutation p.E741V 0.06 tolerated(0.08) benign(0.261) TCGA-W5-AA2U-01 X 73958494 73958494 C A KIAA2022 3'UTR 0.29 TCGA-W5-AA2U-01 X 99921900 99921900 C A SRPX2 Missense_Mutation p.Q311K 0.45 tolerated(0.86) benign(0.252) TCGA-W5-AA2W-01 10 126524649 126524649 C T FAM175B 3'UTR 0.36 TCGA-W5-AA2W-01 10 75434051 75434051 T C AGAP5 3'UTR 0.06 TCGA-W5-AA2W-01 11 118106178 118106178 C T MPZL3 Missense_Mutation p.R193K 0.35 tolerated(1) benign(0) TCGA-W5-AA2W-01 11 64051695 64051695 C T BAD Missense_Mutation p.S49N 0.23 tolerated(0.08) benign(0.331) TCGA-W5-AA2W-01 11 89106611 89106611 C T NOX4 Missense_Mutation p.G375E 0.06 deleterious(0) probably_damaging(0.948) TCGA-W5-AA2W-01 12 52649843 52649843 C G KRT121P RNA 0.31 TCGA-W5-AA2W-01 12 78362376 78362378 CAA - NAV3 In_Frame_Del p.Q191del 0.26 TCGA-W5-AA2W-01 14 102800960 102800960 G A ZNF839 Missense_Mutation p.V496M 0.56 tolerated(0.07) possibly_damaging(0.803) TCGA-W5-AA2W-01 14 22386639 22386639 A C TRAV13-2 Splice_Site p.X17_splice 0.43 TCGA-W5-AA2W-01 14 32625839 32625839 A T ARHGAP5 3'UTR 0.08 TCGA-W5-AA2W-01 14 64926597 64926597 C T MTHFD1 3'UTR 0.43 TCGA-W5-AA2W-01 14 92105595 92105595 C T CATSPERB Splice_Site p.X478_splice 0.40 TCGA-W5-AA2W-01 15 42519937 42519937 A G TMEM87A Missense_Mutation p.M424T 0.08 deleterious(0.04) possibly_damaging(0.464) TCGA-W5-AA2W-01 15 72226035 72226035 G C MYO9A Missense_Mutation p.F846L 0.55 tolerated(0.26) benign(0.008) TCGA-W5-AA2W-01 15 86125248 86125248 G A AKAP13 Missense_Mutation p.E1317K 0.34 deleterious_low_confidence(0.04) benign(0.385) TCGA-W5-AA2W-01 17 36934618 36934618 G A PIP4K2B Missense_Mutation p.T221M 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-W5-AA2W-01 17 71387600 71387600 C T SDK2 Missense_Mutation p.A1326T 0.36 tolerated(0.08) benign(0.018) TCGA-W5-AA2W-01 17 7644290 7644290 C T DNAH2 Missense_Mutation p.R557C 0.67 probably_damaging(0.982) TCGA-W5-AA2W-01 18 30092638 30092638 G A WBP11P1 RNA 0.47 TCGA-W5-AA2W-01 19 47349293 47349293 G T AP2S1 Missense_Mutation p.A37D 0.19 tolerated(0.09) possibly_damaging(0.728) TCGA-W5-AA2W-01 19 48967988 48967988 G A KCNJ14 Missense_Mutation p.S422N 0.08 tolerated(0.06) benign(0.26) TCGA-W5-AA2W-01 19 51631695 51631695 G A SIGLEC9 Silent p.S377S 0.07 TCGA-W5-AA2W-01 1 248263072 248263072 C T OR2L13 Missense_Mutation p.P132L 0.16 deleterious(0.02) benign(0.012) TCGA-W5-AA2W-01 20 21492642 21492643 - TAC NKX2-2 Nonsense_Mutation p.Q246_Y247ins* 0.26 TCGA-W5-AA2W-01 21 46086661 46086661 A G KRTAP12-2 Missense_Mutation p.V48A 0.65 tolerated(0.06) benign(0.242) TCGA-W5-AA2W-01 2 233201622 233201622 C G DIS3L2 3'UTR 0.56 TCGA-W5-AA2W-01 2 238280843 238280843 C T COL6A3 Missense_Mutation p.V1273I 0.21 probably_damaging(0.923) TCGA-W5-AA2W-01 2 26152171 26152171 G C KIF3C Intron 0.20 TCGA-W5-AA2W-01 3 158362500 158362511 AGCAGGTACCGG - GFM1 Splice_Site p.X27_splice 0.42 TCGA-W5-AA2W-01 3 52440307 52440307 T A BAP1 Nonsense_Mutation p.K249* 0.70 TCGA-W5-AA2W-01 6 44233372 44233372 G C NFKBIE Silent p.G43G 0.19 TCGA-W5-AA2W-01 7 108210000 108210001 - A THAP5 Frame_Shift_Ins p.C5Lfs*7 0.29 TCGA-W5-AA2W-01 7 38424123 38424123 A C AMPH 3'UTR 0.43 TCGA-W5-AA2W-01 7 63538216 63538216 A C ZNF727 Missense_Mutation p.K263N 0.19 deleterious(0) probably_damaging(0.993) TCGA-W5-AA2W-01 8 61728947 61728951 TCTTA - CHD7 Frame_Shift_Del p.Y835Sfs*14 0.62 TCGA-W5-AA2W-01 9 130688240 130688240 G A PIP5KL1 Silent p.C223C 0.35 TCGA-W5-AA2W-01 9 131381197 131381197 A G SPTAN1 Missense_Mutation p.N1883S 0.30 tolerated(0.21) benign(0.007) TCGA-W5-AA2W-01 9 131709736 131709736 G A DOLK 5'UTR 0.24 TCGA-W5-AA2W-01 X 110538977 110538977 G A DCX 3'UTR 0.52 TCGA-W5-AA2W-01 X 41469246 41469246 C T CASK Missense_Mutation p.E356K 0.32 tolerated(0.12) benign(0.373) TCGA-W5-AA2W-01 X 48801512 48801512 G T OTUD5 Missense_Mutation p.D209E 0.39 tolerated(1) benign(0.001) TCGA-W5-AA2X-01 10 111674853 111674853 T A XPNPEP1 Missense_Mutation p.N13Y 0.24 tolerated_low_confidence(0.27) benign(0.001) TCGA-W5-AA2X-01 10 112352927 112352927 G T SMC3 Nonsense_Mutation p.E637* 0.35 TCGA-W5-AA2X-01 10 69881563 69881563 G A MYPN Missense_Mutation p.R123Q 0.26 tolerated(0.56) benign(0.002) TCGA-W5-AA2X-01 11 19890524 19890524 C A NAV2 Silent p.I164I 0.32 TCGA-W5-AA2X-01 11 4615690 4615690 C A OR52I1 Missense_Mutation p.T141K 0.33 deleterious(0.02) benign(0.378) TCGA-W5-AA2X-01 11 66258758 66258758 G A DPP3 Silent p.L234L 0.09 TCGA-W5-AA2X-01 11 66407408 66407408 A C RBM4 Missense_Mutation p.T76P 0.07 deleterious(0.02) benign(0.007) TCGA-W5-AA2X-01 11 66625573 66625573 G A LRFN4 Missense_Mutation p.V120I 0.08 tolerated(0.29) benign(0.045) TCGA-W5-AA2X-01 12 15699469 15699469 A G PTPRO Intron 0.38 TCGA-W5-AA2X-01 12 55248425 55248425 G A MUCL1 Splice_Site p.X20_splice 0.52 TCGA-W5-AA2X-01 12 58121322 58121322 G C AGAP2 Missense_Mutation p.I967M 0.09 deleterious(0) probably_damaging(0.998) TCGA-W5-AA2X-01 14 74876476 74876476 G C SYNDIG1L 5'UTR 0.33 TCGA-W5-AA2X-01 14 92470476 92470476 T A TRIP11 Nonsense_Mutation p.K1282* 0.26 TCGA-W5-AA2X-01 15 74328404 74328404 C T PML Intron 0.17 TCGA-W5-AA2X-01 15 91544680 91544680 T C VPS33B Missense_Mutation p.D473G 0.50 deleterious(0.05) benign(0.287) TCGA-W5-AA2X-01 16 22337151 22337151 C T POLR3E Missense_Mutation p.A473V 0.11 tolerated(0.33) benign(0.002) TCGA-W5-AA2X-01 16 32266231 32266231 C A TP53TG3D 3'UTR 0.63 TCGA-W5-AA2X-01 17 26948452 26948452 C A KIAA0100 Missense_Mutation p.G1675V 0.11 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2X-01 17 57474462 57474462 G T YPEL2 Nonsense_Mutation p.E91* 0.46 TCGA-W5-AA2X-01 19 10602675 10602680 CAGGTA - KEAP1 In_Frame_Del p.Y300_L301del 0.41 TCGA-W5-AA2X-01 19 1207097 1207098 AG - STK11 Frame_Shift_Del p.K62Sfs*100 0.33 TCGA-W5-AA2X-01 1 12017915 12017915 T C PLOD1 Missense_Mutation p.L253P 0.33 deleterious(0) probably_damaging(0.928) TCGA-W5-AA2X-01 1 152883128 152883128 C G IVL Nonsense_Mutation p.Y285* 0.27 TCGA-W5-AA2X-01 1 213178743 213178743 T C ANGEL2 Missense_Mutation p.I256V 0.09 tolerated(0.57) benign(0.047) TCGA-W5-AA2X-01 1 228444441 228444441 G A OBSCN Missense_Mutation p.A1559T 0.11 probably_damaging(0.931) TCGA-W5-AA2X-01 1 233490614 233490614 T A MLK4 Missense_Mutation p.S390T 0.65 tolerated(0.13) probably_damaging(0.999) TCGA-W5-AA2X-01 1 240255531 240255531 G A FMN2 Missense_Mutation p.G41D 0.12 unknown(0) TCGA-W5-AA2X-01 1 48705146 48705146 C T SLC5A9 Silent p.C563C 0.31 TCGA-W5-AA2X-01 20 21492017 21492017 C T NKX2-2 3'UTR 0.34 TCGA-W5-AA2X-01 20 57415343 57415343 G A RP4-806M20.3 5'Flank 0.49 TCGA-W5-AA2X-01 21 34060664 34060664 C T SYNJ1 Missense_Mutation p.R307H 0.68 tolerated(0.37) probably_damaging(0.925) TCGA-W5-AA2X-01 21 43161076 43161076 G C RIPK4 Silent p.A759A 0.67 TCGA-W5-AA2X-01 2 119739044 119739044 C A MARCO Missense_Mutation p.Q276K 0.27 tolerated(0.7) possibly_damaging(0.893) TCGA-W5-AA2X-01 2 153514468 153514468 C A PRPF40A Missense_Mutation p.D879Y 0.37 deleterious(0) unknown(0) TCGA-W5-AA2X-01 2 160035180 160035180 G A TANC1 Silent p.Q672Q 0.27 TCGA-W5-AA2X-01 2 210703977 210703977 C T UNC80 Missense_Mutation p.R1025W 0.50 probably_damaging(0.995) TCGA-W5-AA2X-01 2 77745440 77745440 A G LRRTM4 Intron 0.17 TCGA-W5-AA2X-01 3 108682259 108682277 ACCAGTTGGAGTTTCTGCA - MORC1 Splice_Site p.X928_splice 0.11 TCGA-W5-AA2X-01 3 154042261 154042261 G A DHX36 5'UTR 0.26 TCGA-W5-AA2X-01 3 154055683 154055683 C T GPR149 Silent p.G667G 0.21 TCGA-W5-AA2X-01 3 57557144 57557144 G A ARF4 3'UTR 0.13 TCGA-W5-AA2X-01 3 88040342 88040342 G T HTR1F Missense_Mutation p.W148L 0.18 deleterious(0) probably_damaging(1) TCGA-W5-AA2X-01 3 88104670 88104670 C T CGGBP1 Missense_Mutation p.D153N 0.40 tolerated(0.12) probably_damaging(0.961) TCGA-W5-AA2X-01 3 88104763 88104763 C T CGGBP1 Missense_Mutation p.D122N 0.56 tolerated(0.17) benign(0.313) TCGA-W5-AA2X-01 3 99568867 99568867 G C FILIP1L Silent p.T551T 0.35 TCGA-W5-AA2X-01 4 41956274 41956274 T G TMEM33 3'UTR 0.80 TCGA-W5-AA2X-01 4 84337954 84337954 G A HELQ Missense_Mutation p.P1043L 0.70 deleterious(0) probably_damaging(0.949) TCGA-W5-AA2X-01 5 10290721 10290724 ATAT - CMBL Frame_Shift_Del p.I51Lfs*11 0.37 TCGA-W5-AA2X-01 5 112175530 112175530 G - APC Frame_Shift_Del p.V1414* 0.45 TCGA-W5-AA2X-01 5 13865904 13865904 T A DNAH5 Missense_Mutation p.N1410Y 0.45 benign(0) TCGA-W5-AA2X-01 5 179203924 179203924 A G MAML1 3'UTR 0.15 TCGA-W5-AA2X-01 5 5239928 5239928 T A ADAMTS16 Missense_Mutation p.W805R 0.21 deleterious(0.01) probably_damaging(0.945) TCGA-W5-AA2X-01 6 128304395 128304395 G A PTPRK Nonsense_Mutation p.Q1133* 0.41 TCGA-W5-AA2X-01 6 167797976 167797976 G A TCP10 5'Flank 0.17 TCGA-W5-AA2X-01 6 17616003 17616003 A T NUP153 3'UTR 0.35 TCGA-W5-AA2X-01 6 28094609 28094609 C A ZSCAN16 Missense_Mutation p.P146T 0.45 tolerated(0.58) benign(0.002) TCGA-W5-AA2X-01 6 3155891 3155891 C T TUBB2A Missense_Mutation p.G82D 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-W5-AA2X-01 6 34949681 34949681 C T ANKS1A Missense_Mutation p.T217I 0.31 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2X-01 6 38816516 38816516 A T DNAH8 Missense_Mutation p.N1496I 0.45 probably_damaging(1) TCGA-W5-AA2X-01 7 127011146 127011146 T C ZNF800 3'UTR 0.45 TCGA-W5-AA2X-01 7 127724776 127724776 G A SND1 Missense_Mutation p.G704D 0.38 tolerated(0.05) probably_damaging(0.984) TCGA-W5-AA2X-01 7 150778815 150778815 G A TMUB1 Missense_Mutation p.P188S 0.43 tolerated(0.31) possibly_damaging(0.468) TCGA-W5-AA2X-01 7 156743095 156743095 G C NOM1 Missense_Mutation p.A222P 0.55 deleterious(0.05) possibly_damaging(0.908) TCGA-W5-AA2X-01 7 18631142 18631142 C T HDAC9 Missense_Mutation p.A140V 0.33 deleterious(0) possibly_damaging(0.765) TCGA-W5-AA2X-01 7 73474351 73474351 C A ELN Missense_Mutation p.P517H 0.19 unknown(0) TCGA-W5-AA2X-01 7 73927158 73927158 A G GTF2IRD1 Splice_Site p.X42_splice 0.45 TCGA-W5-AA2X-01 7 98775657 98775657 C T KPNA7 Silent p.L450L 0.52 TCGA-W5-AA2X-01 8 41788202 41788202 G A KAT6A 3'UTR 0.30 TCGA-W5-AA2X-01 8 77778890 77778890 A T ZFHX4 3'UTR 0.30 TCGA-W5-AA2X-01 9 117386626 117386626 C T C9orf91 Intron 0.15 TCGA-W5-AA2X-01 9 136305517 136305517 T G ADAMTS13 Silent p.P613P 0.35 TCGA-W5-AA2X-01 9 35802530 35802530 C T NPR2 Missense_Mutation p.R581C 0.36 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2X-01 9 4740952 4740952 T C AK3 Missense_Mutation p.M46V 0.59 tolerated(0.15) benign(0) TCGA-W5-AA2X-01 9 74300266 74300266 T C TMEM2 Silent p.S1333S 0.31 TCGA-W5-AA2X-01 X 71839078 71839078 G A PHKA1 Nonsense_Mutation p.R739* 0.06 TCGA-W5-AA2X-01 X 71932695 71932695 A G PHKA1 Missense_Mutation p.W55R 0.85 deleterious(0) probably_damaging(1) TCGA-W5-AA2Z-01 11 123513240 123513240 C G SCN3B Missense_Mutation p.C120S 0.39 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2Z-01 11 1247459 1247459 G A MUC5B Missense_Mutation p.R51Q 0.36 unknown(0) TCGA-W5-AA2Z-01 11 65123582 65123582 G A TIGD3 Missense_Mutation p.M101I 0.38 tolerated(0.12) benign(0.238) TCGA-W5-AA2Z-01 11 76883884 76883884 C A MYO7A Missense_Mutation p.P630T 0.42 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2Z-01 12 113531422 113531422 C T DTX1 Missense_Mutation p.P361L 0.20 deleterious(0) probably_damaging(0.941) TCGA-W5-AA2Z-01 12 4700465 4700465 G A DYRK4 Splice_Site p.X40_splice 0.33 TCGA-W5-AA2Z-01 16 2052396 2052396 G A ZNF598 Missense_Mutation p.R236W 0.38 probably_damaging(0.999) TCGA-W5-AA2Z-01 16 2510831 2510831 C G C16orf59 Missense_Mutation p.P71A 0.12 tolerated(0.11) possibly_damaging(0.561) TCGA-W5-AA2Z-01 16 318850 318850 T A ITFG3 Missense_Mutation p.V508E 0.46 deleterious(0.01) benign(0.001) TCGA-W5-AA2Z-01 16 3640840 3640840 G T SLX4 Silent p.G933G 0.13 TCGA-W5-AA2Z-01 16 50368662 50368662 C A BRD7 Nonsense_Mutation p.E283* 0.67 TCGA-W5-AA2Z-01 17 76495310 76495310 G A DNAH17-AS1 5'UTR 0.75 TCGA-W5-AA2Z-01 19 15225270 15225270 G C SYDE1 3'UTR 0.25 TCGA-W5-AA2Z-01 19 22784359 22784359 G A AC011467.1 5'Flank 0.25 TCGA-W5-AA2Z-01 19 22940021 22940021 C A ZNF99 3'Flank 0.40 TCGA-W5-AA2Z-01 19 43262341 43262341 C T PSG8 Silent p.P174P 0.20 TCGA-W5-AA2Z-01 19 53914074 53914074 A G ZNF765 3'UTR 0.25 TCGA-W5-AA2Z-01 1 150445250 150445250 C T RPRD2 Missense_Mutation p.P1276S 0.27 tolerated_low_confidence(0.14) benign(0.003) TCGA-W5-AA2Z-01 1 169670703 169670703 T C SELL Missense_Mutation p.K373R 0.16 tolerated(0.13) benign(0.028) TCGA-W5-AA2Z-01 1 169670779 169670779 A G SELL Missense_Mutation p.F348L 0.13 tolerated(0.16) benign(0.061) TCGA-W5-AA2Z-01 1 181686266 181686266 G A CACNA1E Silent p.K451K 0.12 TCGA-W5-AA2Z-01 1 185266627 185266628 AA - IVNS1ABP 3'UTR 0.16 TCGA-W5-AA2Z-01 20 17956445 17956445 G C MGME1 Missense_Mutation p.Q210H 0.26 deleterious(0) probably_damaging(0.982) TCGA-W5-AA2Z-01 20 32263641 32263641 G A E2F1 3'UTR 0.19 TCGA-W5-AA2Z-01 2 238462259 238462259 C A MLPH 3'UTR 0.22 TCGA-W5-AA2Z-01 2 241895265 241895265 G A AC104809.3 Intron 0.35 TCGA-W5-AA2Z-01 3 111958835 111958835 G C SLC9C1 Nonsense_Mutation p.S433* 0.24 TCGA-W5-AA2Z-01 3 151163011 151163011 T - IGSF10 Frame_Shift_Del p.G1587Afs*6 0.12 TCGA-W5-AA2Z-01 3 16646147 16646147 G A DAZL 5'UTR 0.75 TCGA-W5-AA2Z-01 5 101582976 101582976 A G SLCO4C1 Silent p.P597P 0.06 TCGA-W5-AA2Z-01 5 1038541 1038541 G T NKD2 3'UTR 0.14 TCGA-W5-AA2Z-01 5 132232701 132232701 C A AFF4 Nonsense_Mutation p.E541* 0.14 TCGA-W5-AA2Z-01 5 139422135 139422136 - C NRG2 Frame_Shift_Ins p.L174Afs*35 0.17 TCGA-W5-AA2Z-01 6 26408115 26408115 G A BTN3A1 Missense_Mutation p.G217D 0.07 tolerated(0.18) benign(0.159) TCGA-W5-AA2Z-01 7 4722453 4722453 G T FOXK1 Missense_Mutation p.G172W 0.45 deleterious(0) probably_damaging(1) TCGA-W5-AA2Z-01 7 93055882 93055882 C T CALCR Missense_Mutation p.R438H 0.40 deleterious(0) probably_damaging(0.999) TCGA-W5-AA2Z-01 8 23431109 23431109 G C FP15737 5'UTR 0.19 TCGA-W5-AA2Z-01 8 48710796 48710796 A G PRKDC Splice_Site p.X3485_splice 0.12 TCGA-W5-AA2Z-01 9 101594211 101594211 C T GALNT12 Missense_Mutation p.R297W 0.11 deleterious(0) probably_damaging(0.932) TCGA-W5-AA2Z-01 X 103294757 103294757 C A H2BFM Missense_Mutation p.H72N 0.10 deleterious(0) probably_damaging(0.974) TCGA-W5-AA2Z-01 X 130218321 130218321 C G ARHGAP36 Missense_Mutation p.P230A 0.27 deleterious(0) probably_damaging(0.998) TCGA-W5-AA2Z-01 X 151935109 151935109 T A MAGEA3 3'UTR 0.22 TCGA-W5-AA30-01 10 61900193 61900193 A C ANK3 Intron 0.10 TCGA-W5-AA30-01 10 97106174 97106174 A C SORBS1 Silent p.A806A 0.35 TCGA-W5-AA30-01 10 98292847 98292847 C T TM9SF3 Missense_Mutation p.R429H 0.22 deleterious(0) possibly_damaging(0.624) TCGA-W5-AA30-01 11 34101180 34101180 G C CAPRIN1 Missense_Mutation p.V232L 0.08 tolerated(0.17) benign(0.014) TCGA-W5-AA30-01 11 66463945 66463945 G A SPTBN2 Silent p.L1361L 0.47 TCGA-W5-AA30-01 11 6647166 6647166 A T DCHS1 Missense_Mutation p.I2239N 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-W5-AA30-01 11 67051372 67051372 C T ADRBK1 Silent p.D481D 0.09 TCGA-W5-AA30-01 12 110221396 110221396 G T TRPV4 3'UTR 0.19 TCGA-W5-AA30-01 12 40761733 40761733 A T LRRK2 3'UTR 0.04 TCGA-W5-AA30-01 12 665927 665927 A G B4GALNT3 Missense_Mutation p.N759D 0.21 tolerated(0.52) benign(0.006) TCGA-W5-AA30-01 13 115089740 115089740 G C CHAMP1 Missense_Mutation p.L141F 0.12 deleterious(0.01) benign(0.293) TCGA-W5-AA30-01 13 20277436 20277436 C T PSPC1 Missense_Mutation p.G484D 0.13 tolerated(0.07) benign(0.039) TCGA-W5-AA30-01 13 32913032 32913032 G C BRCA2 Missense_Mutation p.E1514Q 0.17 tolerated(0.09) possibly_damaging(0.578) TCGA-W5-AA30-01 14 105722744 105722744 C T BRF1 Intron 0.08 TCGA-W5-AA30-01 14 34394937 34394937 G C EGLN3 3'UTR 0.12 TCGA-W5-AA30-01 14 70238678 70238678 A G SRSF5 3'UTR 0.10 TCGA-W5-AA30-01 14 77274347 77274347 T C ANGEL1 Missense_Mutation p.Y265C 0.19 deleterious(0) probably_damaging(1) TCGA-W5-AA30-01 14 79181473 79181473 T A NRXN3 Missense_Mutation p.C306S 0.27 deleterious(0) possibly_damaging(0.78) TCGA-W5-AA30-01 14 89124692 89124692 G A EML5 Missense_Mutation p.T1239I 0.20 deleterious(0) benign(0.239) TCGA-W5-AA30-01 15 42276152 42276152 C T PLA2G4E Missense_Mutation p.E803K 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-W5-AA30-01 15 83807968 83807968 C T HDGFRP3 3'UTR 0.22 TCGA-W5-AA30-01 17 20407305 20407305 C T RP11-434D2.7 3'Flank 0.17 TCGA-W5-AA30-01 17 72341086 72341086 G A KIF19 Missense_Mutation p.A257T 0.18 deleterious(0) probably_damaging(0.991) TCGA-W5-AA30-01 18 21526190 21526190 C T LAMA3 Missense_Mutation p.S3098F 0.18 benign(0.104) TCGA-W5-AA30-01 18 34853025 34853025 G A CELF4 Silent p.A301A 0.33 TCGA-W5-AA30-01 19 19576284 19576284 G A GATAD2A Missense_Mutation p.G44R 0.29 tolerated(0.06) benign(0.008) TCGA-W5-AA30-01 19 19822519 19822519 A T ZNF14 Missense_Mutation p.I524N 0.29 tolerated(0.13) benign(0.039) TCGA-W5-AA30-01 19 21350428 21350428 C T ZNF431 Missense_Mutation p.P93L 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-W5-AA30-01 19 21910039 21910039 T C ZNF100 Missense_Mutation p.T359A 0.14 tolerated(0.3) benign(0.026) TCGA-W5-AA30-01 19 34916999 34916999 G A PDCD2L Missense_Mutation p.D351N 0.18 deleterious(0) probably_damaging(1) TCGA-W5-AA30-01 19 40929001 40929001 G A SERTAD1 Silent p.S151S 0.11 TCGA-W5-AA30-01 19 42311149 42311149 C T CEACAM3 Intron 0.27 TCGA-W5-AA30-01 19 45162133 45162133 G T PVR Missense_Mutation p.R372L 0.37 deleterious(0.03) benign(0.006) TCGA-W5-AA30-01 19 51670830 51670830 C G CTD-3187F8.14 Intron 0.27 TCGA-W5-AA30-01 19 52249678 52249678 C A FPR1 Missense_Mutation p.R190S 0.29 tolerated(0.15) benign(0.039) TCGA-W5-AA30-01 19 52941195 52941195 A T ZNF534 Missense_Mutation p.N174I 0.19 deleterious(0) probably_damaging(0.937) TCGA-W5-AA30-01 19 56329379 56329379 G A NLRP11 Silent p.N54N 0.21 TCGA-W5-AA30-01 1 150601986 150601986 G A ENSA 5'UTR 0.34 TCGA-W5-AA30-01 1 151554308 151554308 C G TUFT1 3'UTR 0.23 TCGA-W5-AA30-01 1 165513993 165513993 T C LRRC52 Missense_Mutation p.Y154H 0.06 tolerated(0.62) benign(0.02) TCGA-W5-AA30-01 1 173722361 173722361 C T KLHL20 Missense_Mutation p.H256Y 0.10 tolerated(0.06) probably_damaging(0.999) TCGA-W5-AA30-01 1 181767937 181767937 G A CACNA1E Silent p.L2303L 0.10 TCGA-W5-AA30-01 1 182846025 182846025 A G DHX9 Missense_Mutation p.I729V 0.40 tolerated(0.1) benign(0.058) TCGA-W5-AA30-01 1 196295911 196295911 G A KCNT2 Missense_Mutation p.P738S 0.15 deleterious(0) probably_damaging(0.998) TCGA-W5-AA30-01 1 201984393 201984393 A C ELF3 Missense_Mutation p.K353T 0.21 deleterious(0) probably_damaging(0.998) TCGA-W5-AA30-01 1 226349273 226349296 CCTTTCCTCTTCCTCCCGTCGAAG - ACBD3 In_Frame_Del p.L222_R229del 0.18 TCGA-W5-AA30-01 1 227922428 227922428 A G JMJD4 Missense_Mutation p.Y164H 0.25 deleterious(0.03) benign(0.033) TCGA-W5-AA30-01 1 71512790 71512790 C G PTGER3 Silent p.L157L 0.15 TCGA-W5-AA30-01 1 76540564 76540564 C G ST6GALNAC3 Missense_Mutation p.L5V 0.15 benign(0.007) TCGA-W5-AA30-01 20 47683047 47683047 G A CSE1L Missense_Mutation p.R159K 0.41 tolerated(0.15) benign(0.247) TCGA-W5-AA30-01 20 48604898 48604898 A G SNAI1 3'UTR 0.35 TCGA-W5-AA30-01 20 55100881 55100881 C T FAM209A Nonsense_Mutation p.R91* 0.21 TCGA-W5-AA30-01 22 38336895 38336895 C T MICALL1 3'UTR 0.25 TCGA-W5-AA30-01 2 160964274 160964274 G A ITGB6 Silent p.C728C 0.08 TCGA-W5-AA30-01 2 179411745 179411745 C T TTN Missense_Mutation p.A31503T 0.13 TCGA-W5-AA30-01 2 21225533 21225533 G - APOB Frame_Shift_Del p.P4254Lfs*4 0.28 TCGA-W5-AA30-01 2 26712145 26712145 G T OTOF Missense_Mutation p.L327M 0.20 tolerated(0.12) possibly_damaging(0.903) TCGA-W5-AA30-01 2 29006824 29006824 C T PPP1CB Missense_Mutation p.P191L 0.07 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-W5-AA30-01 2 55439844 55439844 C G CLHC1 Missense_Mutation p.C155S 0.20 tolerated(0.44) benign(0.007) TCGA-W5-AA30-01 2 56612716 56612716 T A CCDC85A 3'UTR 0.23 TCGA-W5-AA30-01 2 68371715 68371715 A C WDR92 Splice_Site p.X139_splice 0.29 TCGA-W5-AA30-01 2 68371718 68371718 A T WDR92 Missense_Mutation p.D138E 0.27 deleterious(0.01) possibly_damaging(0.644) TCGA-W5-AA30-01 2 80816537 80816537 G C CTNNA2 Missense_Mutation p.D706H 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-W5-AA30-01 2 99411049 99411049 T C KIAA1211L Silent p.E945E 0.22 TCGA-W5-AA30-01 3 128853021 128853021 C T ISY1 Missense_Mutation p.E209K 0.23 tolerated(0.21) benign(0.02) TCGA-W5-AA30-01 3 178560605 178560605 G A KCNMB2 Silent p.L196L 0.37 TCGA-W5-AA30-01 3 193272658 193272658 C G ATP13A4 5'UTR 0.33 TCGA-W5-AA30-01 3 196082931 196082931 T G UBXN7 3'UTR 0.23 TCGA-W5-AA30-01 3 52651334 52651334 C A PBRM1 Nonsense_Mutation p.E588* 0.25 TCGA-W5-AA30-01 4 114282026 114282026 G A ANK2 Missense_Mutation p.A3577T 0.18 probably_damaging(0.929) TCGA-W5-AA30-01 4 123210346 123210346 T C KIAA1109 Silent p.S3129S 0.08 TCGA-W5-AA30-01 4 1729639 1729639 T C TACC3 Silent p.S170S 0.15 TCGA-W5-AA30-01 4 187004484 187004484 C T TLR3 Silent p.H548H 0.36 TCGA-W5-AA30-01 4 30723183 30723183 C T PCDH7 Missense_Mutation p.R47C 0.17 deleterious(0.03) probably_damaging(0.939) TCGA-W5-AA30-01 4 57843464 57843464 T C NOA1 Silent p.Q96Q 0.12 TCGA-W5-AA30-01 5 154396256 154396256 A C KIF4B Missense_Mutation p.K946T 0.22 tolerated(0.06) benign(0.013) TCGA-W5-AA30-01 5 176721680 176721680 A G NSD1 Silent p.K2437K 0.09 TCGA-W5-AA30-01 5 179007944 179007948 AAAGG - RUFY1 Splice_Site p.X297_splice 0.14 TCGA-W5-AA30-01 5 71630907 71630907 C G PTCD2 Missense_Mutation p.I177M 0.12 tolerated(0.23) benign(0.232) TCGA-W5-AA30-01 6 69348553 69348553 G C BAI3 Intron 0.58 TCGA-W5-AA30-01 7 97852437 97852437 G C TECPR1 Silent p.P931P 0.37 TCGA-W5-AA30-01 8 20079152 20079152 A G ATP6V1B2 3'UTR 0.14 TCGA-W5-AA30-01 8 38369548 38369548 C T C8orf86 3'UTR 0.17 TCGA-W5-AA30-01 9 82341500 82341500 T C TLE4 3'Flank 0.15 TCGA-W5-AA30-01 9 90254352 90254352 C G DAPK1 Missense_Mutation p.D169E 0.14 tolerated(1) benign(0.003) TCGA-W5-AA30-01 X 11308556 11308556 T C ARHGAP6 Intron 0.09 TCGA-W5-AA30-01 X 118718198 118718198 T - UBE2A 3'UTR 0.20 TCGA-W5-AA30-01 X 20179855 20179855 A G RPS6KA3 Silent p.P622P 0.06 TCGA-W5-AA30-01 X 49062181 49062181 G A CACNA1F Silent p.G1866G 0.57 TCGA-W5-AA30-01 X 77912769 77912769 A G ZCCHC5 Silent p.S383S 0.43 TCGA-W5-AA31-01 10 105526913 105526913 A T SH3PXD2A Missense_Mutation p.D56E 0.24 deleterious(0.03) possibly_damaging(0.47) TCGA-W5-AA31-01 10 50960205 50960205 G T OGDHL Missense_Mutation p.L190M 0.21 deleterious(0.03) possibly_damaging(0.611) TCGA-W5-AA31-01 10 54053803 54053803 G A PRKG1 3'UTR 0.28 TCGA-W5-AA31-01 11 128642763 128642763 T - FLI1 Frame_Shift_Del p.F159Sfs*12 0.14 TCGA-W5-AA31-01 11 14666369 14666369 G T PDE3B Missense_Mutation p.G250C 0.23 tolerated(0.11) benign(0.002) TCGA-W5-AA31-01 12 49412594 49412594 G C PRKAG1 5'Flank 0.20 TCGA-W5-AA31-01 12 51740409 51740409 T G CELA1 Missense_Mutation p.Y5S 0.33 tolerated(0.13) benign(0.045) TCGA-W5-AA31-01 12 51740410 51740410 A G CELA1 Missense_Mutation p.Y5H 0.33 tolerated(0.2) benign(0.001) TCGA-W5-AA31-01 12 54976556 54976556 C T PPP1R1A Silent p.R69R 0.07 TCGA-W5-AA31-01 13 100617261 100617262 AT - ZIC5 3'UTR 0.39 TCGA-W5-AA31-01 13 60435664 60435664 C A DIAPH3 Missense_Mutation p.D872Y 0.10 deleterious(0) probably_damaging(1) TCGA-W5-AA31-01 13 86367994 86367994 T C SLITRK6 3'UTR 0.23 TCGA-W5-AA31-01 14 22616076 22616076 T C TRAV27 Missense_Mutation p.W11R 0.10 deleterious(0.03) probably_damaging(0.988) TCGA-W5-AA31-01 14 57268926 57268926 G A OTX2 Missense_Mutation p.P141S 0.38 tolerated(0.1) benign(0.001) TCGA-W5-AA31-01 15 91474640 91474640 A G HDDC3 3'UTR 0.61 TCGA-W5-AA31-01 16 2126499 2126499 G T TSC2 Missense_Mutation p.R917L 0.18 deleterious(0) probably_damaging(0.965) TCGA-W5-AA31-01 16 67963773 67963773 G - CTRL 3'UTR 0.34 TCGA-W5-AA31-01 17 1384109 1384109 C A MYO1C Missense_Mutation p.G233V 0.48 deleterious(0) probably_damaging(0.984) TCGA-W5-AA31-01 17 1628548 1628548 C T WDR81 Missense_Mutation p.P99S 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-W5-AA31-01 17 17968589 17968589 G A GID4 3'UTR 0.40 TCGA-W5-AA31-01 17 7216573 7216573 C A GPS2 Missense_Mutation p.K254N 0.50 deleterious_low_confidence(0) benign(0.096) TCGA-W5-AA31-01 17 7216703 7216703 C G GPS2 Missense_Mutation p.Q240H 0.52 deleterious_low_confidence(0.03) benign(0.231) TCGA-W5-AA31-01 17 7798770 7798770 C T CHD3 Silent p.P598P 0.15 TCGA-W5-AA31-01 19 21910728 21910728 T A ZNF100 Missense_Mutation p.E129V 0.48 deleterious(0) possibly_damaging(0.448) TCGA-W5-AA31-01 19 2737280 2737280 C T SLC39A3 5'UTR 0.15 TCGA-W5-AA31-01 19 44417593 44417593 A G ZNF45 Silent p.D665D 0.40 TCGA-W5-AA31-01 19 48565379 48565379 C T PLA2G4C Missense_Mutation p.R388Q 0.15 tolerated(0.17) benign(0.014) TCGA-W5-AA31-01 1 114306576 114306576 T A RSBN1 3'UTR 0.11 TCGA-W5-AA31-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.23 tolerated(0.06) benign(0.006) TCGA-W5-AA31-01 1 120438659 120438659 C T ADAM30 Missense_Mutation p.E101K 0.33 deleterious(0) probably_damaging(1) TCGA-W5-AA31-01 1 240371322 240371322 C T FMN2 Silent p.P1070P 0.16 TCGA-W5-AA31-01 20 35315979 35315979 T C NDRG3 Missense_Mutation p.D79G 0.40 deleterious(0) probably_damaging(0.967) TCGA-W5-AA31-01 20 44463735 44463735 G A SNX21 Missense_Mutation p.D143N 0.29 deleterious(0) probably_damaging(0.917) TCGA-W5-AA31-01 20 50290700 50290700 G A ATP9A Silent p.I343I 0.19 TCGA-W5-AA31-01 20 6759625 6759625 C T BMP2 Silent p.C360C 0.11 TCGA-W5-AA31-01 3 100170610 100170610 G A LNP1 Silent p.R68R 0.09 TCGA-W5-AA31-01 3 48685385 48685385 C - CELSR3 Frame_Shift_Del p.A2340Pfs*45 0.12 TCGA-W5-AA31-01 3 52440916 52440916 C T BAP1 Nonsense_Mutation p.W196* 0.45 TCGA-W5-AA31-01 3 71005925 71005925 A T FOXP1 3'Flank 0.20 TCGA-W5-AA31-01 3 98234900 98234900 T C CLDND1 3'UTR 0.12 TCGA-W5-AA31-01 4 40817114 40817114 C T APBB2 3'Flank 0.37 TCGA-W5-AA31-01 5 140188703 140188703 G A PCDHA4 Missense_Mutation p.R644H 0.32 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-W5-AA31-01 5 140230059 140230059 C G PCDHA9 Missense_Mutation p.T660R 0.31 deleterious_low_confidence(0.05) probably_damaging(0.958) TCGA-W5-AA31-01 5 169509839 169509839 G A DOCK2 Missense_Mutation p.D1824N 0.33 deleterious_low_confidence(0.01) benign(0.002) TCGA-W5-AA31-01 5 174869423 174869423 C T DRD1 Missense_Mutation p.R227H 0.29 deleterious(0) probably_damaging(1) TCGA-W5-AA31-01 5 33648961 33648961 T C ADAMTS12 Missense_Mutation p.Y482C 0.23 deleterious(0) probably_damaging(0.996) TCGA-W5-AA31-01 5 36961673 36961673 A C NIPBL Missense_Mutation p.H149P 0.24 tolerated(0.44) benign(0.002) TCGA-W5-AA31-01 6 102124680 102124680 G T GRIK2 Splice_Site p.X241_splice 0.40 TCGA-W5-AA31-01 7 141429375 141429375 C T WEE2 Missense_Mutation p.T527I 0.14 tolerated(0.2) benign(0.001) TCGA-W5-AA31-01 7 143792858 143792858 A T OR2A12 Missense_Mutation p.I220F 0.42 deleterious(0) probably_damaging(1) TCGA-W5-AA31-01 7 155573595 155573595 G A RBM33 3'UTR 0.47 TCGA-W5-AA31-01 7 48314511 48314511 C T ABCA13 Missense_Mutation p.L1750F 0.17 possibly_damaging(0.533) TCGA-W5-AA31-01 7 94139341 94139341 C A CASD1 5'UTR 0.40 TCGA-W5-AA31-01 8 110131447 110131447 C A TRHR Nonsense_Mutation p.Y320* 0.27 TCGA-W5-AA31-01 8 110431382 110431382 C A PKHD1L1 Missense_Mutation p.T806K 0.32 tolerated(0.11) benign(0.002) TCGA-W5-AA31-01 8 27764677 27764677 G A SCARA5 Missense_Mutation p.R362C 0.21 deleterious(0) probably_damaging(1) TCGA-W5-AA31-01 8 77778101 77778101 C A ZFHX4 3'UTR 0.06 TCGA-W5-AA31-01 9 116812673 116812673 G T ZNF618 3'UTR 0.25 TCGA-W5-AA31-01 9 127239301 127239301 C T GPR144 Silent p.S938S 0.16 TCGA-W5-AA31-01 9 140093584 140093584 C A TPRN Missense_Mutation p.R527L 0.31 tolerated(0.3) benign(0.046) TCGA-W5-AA31-01 9 14619079 14619079 G A ZDHHC21 Missense_Mutation p.P228L 0.47 deleterious(0.01) benign(0.23) TCGA-W5-AA31-01 X 79941034 79941034 C G BRWD3 Missense_Mutation p.G1336A 0.66 tolerated_low_confidence(0.96) benign(0.001) TCGA-W5-AA33-01 10 120791691 120791691 A C NANOS1 3'UTR 0.22 TCGA-W5-AA33-01 11 111796803 111796803 C A C11orf52 Nonsense_Mutation p.C84* 0.17 TCGA-W5-AA33-01 11 117375684 117375684 C T DSCAML1 Missense_Mutation p.V773M 0.20 deleterious(0) benign(0.193) TCGA-W5-AA33-01 11 6632892 6632892 C T TAF10 Intron 0.38 TCGA-W5-AA33-01 14 24974805 24974805 G A CMA1 Missense_Mutation p.R221W 0.26 tolerated(0.12) possibly_damaging(0.896) TCGA-W5-AA33-01 14 50092315 50092315 T G DNAAF2 Missense_Mutation p.H820P 0.17 deleterious(0) probably_damaging(0.999) TCGA-W5-AA33-01 16 83520260 83520260 G A CDH13 Silent p.E367E 0.25 TCGA-W5-AA33-01 17 1972077 1972077 A C SMG6 Missense_Mutation p.L1277R 0.30 deleterious(0) probably_damaging(1) TCGA-W5-AA33-01 18 59174732 59174732 C A CDH20 Missense_Mutation p.A319E 0.24 tolerated(0.79) benign(0.161) TCGA-W5-AA33-01 19 48198732 48198732 G C GLTSCR1 Splice_Site p.X1062_splice 0.37 TCGA-W5-AA33-01 19 57888623 57888623 C T ZNF547 Silent p.S93S 0.27 TCGA-W5-AA33-01 1 109171014 109171014 C A FAM102B Intron 0.16 TCGA-W5-AA33-01 1 181701852 181701852 G A CACNA1E Missense_Mutation p.G877D 0.32 tolerated(0.32) probably_damaging(0.931) TCGA-W5-AA33-01 20 37353459 37353459 T A SLC32A1 Missense_Mutation p.M31K 0.19 deleterious(0.04) benign(0.006) TCGA-W5-AA33-01 20 50721841 50721841 A T ZFP64 5'UTR 0.16 TCGA-W5-AA33-01 22 17072592 17072592 G T CCT8L2 Silent p.G283G 0.25 TCGA-W5-AA33-01 22 32500775 32500775 C G SLC5A1 Silent p.L556L 0.21 TCGA-W5-AA33-01 2 10141304 10141304 C T GRHL1 3'UTR 0.09 TCGA-W5-AA33-01 2 136664945 136664945 A G DARS Silent p.L483L 0.25 TCGA-W5-AA33-01 2 202565768 202565768 C T ALS2 3'UTR 0.19 TCGA-W5-AA33-01 2 75118932 75118932 C T HK2 3'UTR 0.14 TCGA-W5-AA33-01 3 113002290 113002290 C T BOC Missense_Mutation p.P822S 0.11 deleterious(0.01) possibly_damaging(0.616) TCGA-W5-AA33-01 3 113724730 113724730 G T KIAA1407 Missense_Mutation p.T498K 0.24 tolerated(1) benign(0.006) TCGA-W5-AA33-01 3 52536050 52536050 C A STAB1 Nonsense_Mutation p.C120* 0.20 TCGA-W5-AA33-01 3 62268423 62268423 C T PTPRG Missense_Mutation p.R1312W 0.14 deleterious(0) probably_damaging(1) TCGA-W5-AA33-01 4 169847541 169847541 G A PALLD 3'Flank 0.10 TCGA-W5-AA33-01 4 170911721 170911721 C T MFAP3L 3'UTR 0.28 TCGA-W5-AA33-01 5 13919410 13919410 G A DNAH5 Nonsense_Mutation p.R284* 0.38 TCGA-W5-AA33-01 5 140202795 140202795 C T PCDHA5 Missense_Mutation p.R479W 0.17 tolerated_low_confidence(0.13) benign(0.068) TCGA-W5-AA33-01 5 148383693 148383693 C T SH3TC2 3'Flank 0.11 TCGA-W5-AA33-01 5 167674541 167674541 G A TENM2 Silent p.T2199T 0.28 TCGA-W5-AA33-01 5 41510580 41510580 C T PLCXD3 Missense_Mutation p.A17T 0.17 deleterious(0.01) benign(0.089) TCGA-W5-AA33-01 6 170179308 170179308 G C ERMARD Silent p.L590L 0.28 TCGA-W5-AA33-01 7 142020924 142020924 C G TRBV5-1 Missense_Mutation p.L11V 0.18 tolerated(0.06) possibly_damaging(0.45) TCGA-W5-AA33-01 7 143079401 143079401 G A ZYX Missense_Mutation p.G90E 0.17 tolerated(0.11) unknown(0) TCGA-W5-AA33-01 7 149473162 149473162 C T ZNF467 5'Flank 0.17 TCGA-W5-AA33-01 7 81381419 81381419 C A HGF Intron 0.17 TCGA-W5-AA33-01 8 26613950 26613950 T C ADRA1A Intron 0.11 TCGA-W5-AA33-01 8 75737614 75737614 C A PI15 Missense_Mutation p.L44M 0.21 deleterious(0.04) possibly_damaging(0.556) TCGA-W5-AA33-01 8 7680937 7680937 C A DEFB105A Missense_Mutation p.A27S 0.19 deleterious(0.01) probably_damaging(0.935) TCGA-W5-AA33-01 9 13168539 13168539 T C MPDZ Missense_Mutation p.D1027G 0.20 deleterious(0.01) possibly_damaging(0.897) TCGA-W5-AA33-01 9 20995654 20995654 T G FOCAD 3'UTR 0.10 TCGA-W5-AA33-01 X 123839042 123839042 T C TENM1 Missense_Mutation p.N279S 0.34 tolerated_low_confidence(0.06) possibly_damaging(0.719) TCGA-W5-AA33-01 X 41043819 41043819 A G USP9X Missense_Mutation p.N1150S 0.30 tolerated(0.94) benign(0.001) TCGA-W5-AA33-01 X 70516449 70516449 C T NONO Nonsense_Mutation p.Q229* 0.42 TCGA-W5-AA34-01 10 105238524 105238524 C T CALHM3 Missense_Mutation p.R89K 0.24 tolerated(0.72) benign(0.001) TCGA-W5-AA34-01 10 123279605 123279605 A C FGFR2 Missense_Mutation p.F276C 0.83 deleterious(0) probably_damaging(0.919) TCGA-W5-AA34-01 10 300298 300298 T A ZMYND11 3'UTR 0.05 TCGA-W5-AA34-01 10 89622451 89622451 T A KLLN 5'UTR 0.44 TCGA-W5-AA34-01 11 119243486 119243486 C T USP2 Silent p.T235T 0.50 TCGA-W5-AA34-01 11 1776236 1776236 C T RP11-295K3.1 Missense_Mutation p.G114S 0.53 tolerated_low_confidence(0.07) unknown(0) TCGA-W5-AA34-01 11 21135210 21135210 G T NELL1 Missense_Mutation p.R459L 0.19 tolerated(0.64) benign(0.033) TCGA-W5-AA34-01 11 22381017 22381017 G A SLC17A6 Missense_Mutation p.A173T 0.36 tolerated(0.13) possibly_damaging(0.644) TCGA-W5-AA34-01 11 62289154 62289154 G C AHNAK Missense_Mutation p.F4245L 0.41 probably_damaging(0.986) TCGA-W5-AA34-01 11 88323786 88323786 G C GRM5 Missense_Mutation p.P558R 0.35 deleterious(0) probably_damaging(0.961) TCGA-W5-AA34-01 12 6153555 6153555 G A VWF Missense_Mutation p.R782W 0.33 deleterious(0) probably_damaging(0.993) TCGA-W5-AA34-01 12 86373133 86373133 C T MGAT4C Silent p.R457R 0.32 TCGA-W5-AA34-01 13 29599613 29599613 C G MTUS2 Missense_Mutation p.Q270E 0.29 tolerated(0.22) benign(0.121) TCGA-W5-AA34-01 14 22038258 22038258 C A OR10G3 Silent p.V206V 0.30 TCGA-W5-AA34-01 14 68265039 68265039 C G ZFYVE26 Missense_Mutation p.S647T 0.12 tolerated(0.25) benign(0.003) TCGA-W5-AA34-01 14 74358842 74358842 G A ZNF410 5'UTR 0.70 TCGA-W5-AA34-01 15 60644601 60644601 G A ANXA2 Silent p.S239S 0.15 TCGA-W5-AA34-01 16 23197587 23197587 C T SCNN1G 5'UTR 0.20 TCGA-W5-AA34-01 16 49412407 49412407 C T C16orf78 Silent p.D99D 0.15 TCGA-W5-AA34-01 17 26898172 26898174 GAA - PIGS In_Frame_Del p.F23del 0.32 TCGA-W5-AA34-01 18 31803205 31803205 G C NOL4 Missense_Mutation p.R5G 0.30 tolerated(0.2) probably_damaging(0.99) TCGA-W5-AA34-01 19 30476190 30476190 A G URI1 Silent p.K71K 0.50 TCGA-W5-AA34-01 19 49973687 49973687 C T ALDH16A1 Missense_Mutation p.A791V 0.09 tolerated(0.38) benign(0.298) TCGA-W5-AA34-01 1 113253388 113253388 G C PPM1J Missense_Mutation p.P399R 0.08 deleterious(0) probably_damaging(0.977) TCGA-W5-AA34-01 1 115218557 115218557 C T AMPD1 Missense_Mutation p.V519M 0.32 deleterious(0.01) probably_damaging(0.914) TCGA-W5-AA34-01 1 158549641 158549641 T A OR10X1 Missense_Mutation p.T17S 0.07 tolerated(0.52) benign(0.024) TCGA-W5-AA34-01 1 243667629 243667629 A G AKT3 3'UTR 0.35 TCGA-W5-AA34-01 20 60709236 60709236 G A LSM14B 3'UTR 0.13 TCGA-W5-AA34-01 22 21414708 21414708 G A AC002472.13 Missense_Mutation p.R356K 0.56 tolerated(1) benign(0) TCGA-W5-AA34-01 22 32482270 32482270 C G SLC5A1 Missense_Mutation p.T362S 0.34 tolerated(1) benign(0.079) TCGA-W5-AA34-01 22 38978704 38978704 T A FAM227A Intron 0.30 TCGA-W5-AA34-01 2 111144612 111144612 C G LINC01106 5'Flank 0.38 TCGA-W5-AA34-01 2 128284021 128284021 G A IWS1 5'UTR 0.48 TCGA-W5-AA34-01 2 131522535 131522535 A G AMER3 3'UTR 0.33 TCGA-W5-AA34-01 2 179453444 179453444 T C TTN Missense_Mutation p.K21003R 0.05 TCGA-W5-AA34-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-W5-AA34-01 2 74327840 74327840 A T TET3 Missense_Mutation p.S1174C 0.23 deleterious(0.02) possibly_damaging(0.563) TCGA-W5-AA34-01 3 147106209 147106209 G A ZIC4 3'UTR 0.16 TCGA-W5-AA34-01 3 160285775 160285775 G A KPNA4 5'Flank 0.42 TCGA-W5-AA34-01 3 197547212 197547212 A G LRCH3 Missense_Mutation p.E184G 0.40 deleterious(0) probably_damaging(0.982) TCGA-W5-AA34-01 3 50332983 50332983 C T HYAL3 Silent p.L17L 0.75 TCGA-W5-AA34-01 4 162697123 162697123 G A FSTL5 Silent p.D171D 0.52 TCGA-W5-AA34-01 4 71522073 71522073 T G IGJ Missense_Mutation p.L151F 0.25 deleterious(0) probably_damaging(0.999) TCGA-W5-AA34-01 5 150409654 150409654 G A TNIP1 3'UTR 0.39 TCGA-W5-AA34-01 6 32975954 32975954 T A HLA-DOA Missense_Mutation p.Q56L 0.34 deleterious(0) probably_damaging(0.984) TCGA-W5-AA34-01 7 120936987 120936988 - A CPED1 3'UTR 0.60 TCGA-W5-AA34-01 7 150644044 150644044 G A KCNH2 Missense_Mutation p.P1084L 0.44 tolerated(0.1) benign(0.062) TCGA-W5-AA34-01 8 104831517 104831517 G A RIMS2 Intron 0.50 TCGA-W5-AA34-01 8 1616583 1616583 C A DLGAP2 Missense_Mutation p.S553R 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-W5-AA34-01 8 35579781 35579781 G A UNC5D Missense_Mutation p.V391M 0.11 deleterious(0.01) benign(0.23) TCGA-W5-AA34-01 8 41525850 41525850 G A ANK1 Missense_Mutation p.R1818W 0.45 tolerated_low_confidence(0.32) benign(0.002) TCGA-W5-AA34-01 8 61654449 61654449 C A CHD7 Missense_Mutation p.P153Q 0.31 possibly_damaging(0.804) TCGA-W5-AA34-01 9 131873726 131873726 T A PPP2R4 5'UTR 0.28 TCGA-W5-AA34-01 X 109441502 109441502 C A AMMECR1 3'UTR 0.07 TCGA-W5-AA34-01 X 111155791 111155791 C A TRPC5 Missense_Mutation p.A210S 0.64 tolerated(0.07) probably_damaging(0.995) TCGA-W5-AA34-01 X 111698987 111698987 C A ZCCHC16 3'UTR 0.29 TCGA-W5-AA34-01 X 19021009 19021009 T C GPR64 Missense_Mutation p.T729A 0.30 deleterious(0) probably_damaging(0.997) TCGA-W5-AA34-01 X 84533176 84533176 G T POF1B 3'UTR 0.37 TCGA-W5-AA36-01 10 123274794 123274794 T C FGFR2 Missense_Mutation p.Y376C 0.28 deleterious(0) probably_damaging(0.967) TCGA-W5-AA36-01 11 101375261 101375261 C T TRPC6 Missense_Mutation p.E147K 0.34 deleterious(0) probably_damaging(0.998) TCGA-W5-AA36-01 11 27387816 27387816 G T LGR4 3'UTR 0.46 TCGA-W5-AA36-01 11 4936000 4936000 A T OR51G2 Missense_Mutation p.S298R 0.12 deleterious(0) benign(0.011) TCGA-W5-AA36-01 12 47160371 47160371 G T SLC38A4 3'UTR 0.87 TCGA-W5-AA36-01 12 52200944 52200944 C T SCN8A Missense_Mutation p.R1892C 0.94 deleterious(0) probably_damaging(0.999) TCGA-W5-AA36-01 12 6059011 6059011 G T VWF Missense_Mutation p.Q2732K 0.80 tolerated(0.14) benign(0.292) TCGA-W5-AA36-01 14 60194145 60194145 G A RTN1 Silent p.D419D 0.70 TCGA-W5-AA36-01 15 23891038 23891038 G T MAGEL2 Missense_Mutation p.Q15K 0.47 deleterious_low_confidence(0.01) benign(0.137) TCGA-W5-AA36-01 15 32702837 32702837 A C RP13-395E19.3 RNA 0.40 TCGA-W5-AA36-01 15 42003305 42003305 G T MGA Nonsense_Mutation p.E948* 0.34 TCGA-W5-AA36-01 16 22237252 22237252 C T EEF2K Missense_Mutation p.R68W 0.55 deleterious_low_confidence(0) benign(0.28) TCGA-W5-AA36-01 16 3140424 3140424 G A ZSCAN10 Silent p.G282G 0.43 TCGA-W5-AA36-01 16 58557301 58557301 G A CNOT1 Missense_Mutation p.T2297M 0.45 deleterious(0) benign(0.344) TCGA-W5-AA36-01 17 36687810 36687811 - T SRCIN1 3'UTR 0.25 TCGA-W5-AA36-01 17 40632766 40632766 G T ATP6V0A1 Missense_Mutation p.G246W 0.15 deleterious(0.01) probably_damaging(1) TCGA-W5-AA36-01 17 48245308 48245308 G A SGCA Missense_Mutation p.V105I 0.54 tolerated(0.46) possibly_damaging(0.669) TCGA-W5-AA36-01 17 62796665 62796665 C T PLEKHM1P RNA 0.40 TCGA-W5-AA36-01 17 76565606 76565606 G A DNAH17 Nonsense_Mutation p.R350* 0.27 TCGA-W5-AA36-01 18 31803143 31803143 G A NOL4 Silent p.T25T 0.38 TCGA-W5-AA36-01 19 14857053 14857053 C T EMR2 Missense_Mutation p.R725Q 0.46 tolerated(0.92) benign(0.002) TCGA-W5-AA36-01 19 14910325 14910325 C A OR7C1 Silent p.V208V 0.33 TCGA-W5-AA36-01 19 39978715 39978715 G T TIMM50 Silent p.L340L 0.46 TCGA-W5-AA36-01 19 50755909 50755909 C T MYH14 Missense_Mutation p.A615V 0.49 deleterious(0.03) possibly_damaging(0.833) TCGA-W5-AA36-01 19 55450665 55450665 C A NLRP7 Nonsense_Mutation p.E508* 0.52 TCGA-W5-AA36-01 19 7676453 7676453 G A CAMSAP3 Missense_Mutation p.A419T 0.43 tolerated(1) benign(0.037) TCGA-W5-AA36-01 1 14108529 14108529 G A PRDM2 Silent p.S1413S 0.79 TCGA-W5-AA36-01 1 156646400 156646400 G A NES Silent p.R219R 0.47 TCGA-W5-AA36-01 1 159283604 159283604 G C OR10J3 Missense_Mutation p.H282Q 0.37 deleterious(0) benign(0.075) TCGA-W5-AA36-01 1 207643265 207643265 C A CR2 Missense_Mutation p.A348E 0.42 tolerated(0.49) benign(0.148) TCGA-W5-AA36-01 1 232946084 232946084 T C MAP10 3'UTR 0.38 TCGA-W5-AA36-01 1 241724052 241724052 G A KMO Missense_Mutation p.G150E 0.41 tolerated(0.42) benign(0.405) TCGA-W5-AA36-01 1 32645836 32645836 C T TXLNA 5'UTR 0.09 TCGA-W5-AA36-01 1 34164485 34164485 C A CSMD2 Missense_Mutation p.D1225Y 0.13 deleterious(0) possibly_damaging(0.734) TCGA-W5-AA36-01 1 39797094 39797094 C T MACF1 Intron 0.88 TCGA-W5-AA36-01 1 57045054 57045054 A G PPAP2B 5'UTR 0.70 TCGA-W5-AA36-01 1 67452931 67452931 A G MIER1 3'Flank 0.50 TCGA-W5-AA36-01 1 78097739 78097739 G T ZZZ3 Missense_Mutation p.S434Y 0.28 tolerated(0.35) benign(0.001) TCGA-W5-AA36-01 20 49626541 49626541 C A KCNG1 Missense_Mutation p.C112F 0.61 deleterious(0.05) possibly_damaging(0.878) TCGA-W5-AA36-01 22 21805652 21805652 C T HIC2 3'UTR 0.37 TCGA-W5-AA36-01 2 179296802 179296802 G T PRKRA 3'UTR 0.40 TCGA-W5-AA36-01 2 191524690 191524690 G A NAB1 Missense_Mutation p.R263K 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-W5-AA36-01 2 209113113 209113113 G T IDH1 Missense_Mutation p.R132S 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W5-AA36-01 2 234070390 234070390 G T INPP5D Missense_Mutation p.Q374H 0.52 deleterious(0.02) probably_damaging(0.981) TCGA-W5-AA36-01 4 139979170 139979171 - A ELF2 3'UTR 0.14 TCGA-W5-AA36-01 4 167655917 167655917 G T SPOCK3 3'UTR 0.41 TCGA-W5-AA36-01 4 83770054 83770054 A C SEC31A Missense_Mutation p.I802S 0.07 tolerated(0.18) benign(0) TCGA-W5-AA36-01 5 32400297 32400297 G C ZFR Missense_Mutation p.L510V 0.24 tolerated(0.14) unknown(0) TCGA-W5-AA36-01 5 40692448 40692448 G A PTGER4 Missense_Mutation p.E479K 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.78) TCGA-W5-AA36-01 5 466876 466876 G A EXOC3 Missense_Mutation p.G701R 0.51 deleterious(0) probably_damaging(0.999) TCGA-W5-AA36-01 6 10942979 10942979 G C SYCP2L Missense_Mutation p.D652H 0.22 deleterious(0.02) probably_damaging(0.919) TCGA-W5-AA36-01 6 28348335 28348335 G A ZSCAN12 3'UTR 0.06 TCGA-W5-AA36-01 6 32724167 32724167 G T HLA-DQB2 3'UTR 0.53 TCGA-W5-AA36-01 6 35211888 35211888 C T SCUBE3 Silent p.F740F 0.41 TCGA-W5-AA36-01 7 140110831 140110831 A C RAB19 Intron 0.44 TCGA-W5-AA36-01 7 82579250 82579250 G C PCLO Missense_Mutation p.H3552D 0.31 unknown(0) TCGA-W5-AA36-01 8 116631527 116631527 G A TRPS1 Silent p.R266R 0.47 TCGA-W5-AA36-01 8 59363663 59363663 G A UBXN2B 3'UTR 0.09 TCGA-W5-AA36-01 8 61655471 61655471 C T CHD7 Nonsense_Mutation p.R494* 0.27 TCGA-W5-AA36-01 8 90783971 90783971 A T RIPK2 Missense_Mutation p.Y215F 0.36 tolerated(0.81) benign(0.074) TCGA-W5-AA36-01 9 103339847 103339847 G C TMEFF1 3'UTR 0.53 TCGA-W5-AA36-01 9 21409765 21409765 A T IFNA8 3'UTR 0.45 TCGA-W5-AA36-01 9 79118513 79118513 G A GCNT1 Missense_Mutation p.V406I 0.49 tolerated(0.24) benign(0.002) TCGA-W5-AA36-01 X 100382607 100382607 C A CENPI Missense_Mutation p.Q343K 0.45 tolerated(0.13) benign(0.015) TCGA-W5-AA36-01 X 105197050 105197050 C T NRK Missense_Mutation p.T1514I 0.48 deleterious(0) possibly_damaging(0.766) TCGA-W5-AA36-01 X 152482773 152482773 A C MAGEA1 Missense_Mutation p.S80A 0.33 tolerated(0.07) possibly_damaging(0.78) TCGA-W5-AA36-01 X 152482859 152482859 G T MAGEA1 Nonsense_Mutation p.S51* 0.30 TCGA-W5-AA36-01 X 2998953 2998953 G A ARSF Missense_Mutation p.R102K 0.40 tolerated(0.27) benign(0.001) TCGA-W5-AA36-01 X 50053221 50053221 C A CCNB3 Missense_Mutation p.N684K 0.39 tolerated(0.72) possibly_damaging(0.554) TCGA-W5-AA38-01 10 103542240 103542240 G A NPM3 Missense_Mutation p.P107S 0.64 deleterious(0.01) probably_damaging(0.993) TCGA-W5-AA38-01 10 106959842 106959842 G A SORCS3 Missense_Mutation p.E699K 0.28 tolerated(0.17) benign(0.01) TCGA-W5-AA38-01 11 118499246 118499246 G T PHLDB1 Silent p.V569V 0.26 TCGA-W5-AA38-01 11 128354828 128354828 G A ETS1 Missense_Mutation p.S251L 0.33 tolerated(0.09) benign(0.001) TCGA-W5-AA38-01 11 59362619 59362619 C A OSBP Intron 0.11 TCGA-W5-AA38-01 11 65660150 65660150 G T FOSL1 3'UTR 0.25 TCGA-W5-AA38-01 13 19751499 19751499 G T TUBA3C Silent p.A208A 0.17 TCGA-W5-AA38-01 14 38724339 38724339 C T CLEC14A Missense_Mutation p.G297R 0.45 tolerated(0.07) benign(0.008) TCGA-W5-AA38-01 15 102293049 102293049 A G DNM1P47 RNA 0.29 TCGA-W5-AA38-01 15 25599825 25599825 A - UBE3A Frame_Shift_Del p.F713Lfs*14 0.20 TCGA-W5-AA38-01 15 27193612 27193612 G A GABRA5 3'UTR 0.20 TCGA-W5-AA38-01 15 49117577 49117577 T C SHC4 3'UTR 0.55 TCGA-W5-AA38-01 15 64968453 64968453 C A ZNF609 Missense_Mutation p.Q1134K 0.35 deleterious(0) possibly_damaging(0.858) TCGA-W5-AA38-01 15 64968457 64968457 T G ZNF609 Splice_Site p.X1134_splice 0.33 TCGA-W5-AA38-01 15 93011867 93011867 G C ST8SIA2 3'UTR 0.16 TCGA-W5-AA38-01 16 2287818 2287818 G C DNASE1L2 Silent p.A214A 0.17 TCGA-W5-AA38-01 16 27561235 27561235 G A GTF3C1 5'Flank 0.17 TCGA-W5-AA38-01 16 56442015 56442015 G T AMFR Missense_Mutation p.P176H 0.15 deleterious(0) probably_damaging(0.971) TCGA-W5-AA38-01 17 38028702 38028702 G C ZPBP2 Missense_Mutation p.E196Q 0.12 tolerated(0.08) benign(0.011) TCGA-W5-AA38-01 17 38128427 38128427 G A GSDMA Missense_Mutation p.G234E 0.16 tolerated(0.15) benign(0.009) TCGA-W5-AA38-01 18 33767560 33767560 G A MOCOS Missense_Mutation p.D20N 0.26 deleterious_low_confidence(0.03) benign(0.058) TCGA-W5-AA38-01 18 43430634 43430635 - T EPG5 3'UTR 0.23 TCGA-W5-AA38-01 19 10941703 10941703 G A DNM2 Missense_Mutation p.E865K 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-W5-AA38-01 19 43674291 43674291 C T PSG5 Splice_Site p.X322_splice 0.07 TCGA-W5-AA38-01 19 4652599 4652599 C T TNFAIP8L1 3'UTR 0.12 TCGA-W5-AA38-01 1 116206776 116206776 C A VANGL1 Silent p.I233I 0.28 TCGA-W5-AA38-01 1 120438863 120438863 G T ADAM30 Missense_Mutation p.H33N 0.15 tolerated(0.2) benign(0.031) TCGA-W5-AA38-01 1 186312595 186312595 G A TPR Nonsense_Mutation p.R1205* 0.43 TCGA-W5-AA38-01 1 228433225 228433225 C T OBSCN Missense_Mutation p.T1290M 0.07 benign(0.089) TCGA-W5-AA38-01 1 42925444 42925444 G C PPCS Missense_Mutation p.E261D 0.17 tolerated(0.75) benign(0.014) TCGA-W5-AA38-01 1 82457584 82457584 T C LPHN2 3'UTR 0.09 TCGA-W5-AA38-01 1 87209025 87209025 A G SH3GLB1 3'Flank 0.12 TCGA-W5-AA38-01 20 31035118 31035118 A G C20orf112 3'UTR 0.19 TCGA-W5-AA38-01 20 39793975 39793975 G A PLCG1 Missense_Mutation p.G493S 0.12 deleterious(0.01) probably_damaging(1) TCGA-W5-AA38-01 20 54943398 54943398 A G FAM210B 3'UTR 0.22 TCGA-W5-AA38-01 21 38460547 38460547 A G TTC3 Missense_Mutation p.D80G 0.30 deleterious(0.03) benign(0.012) TCGA-W5-AA38-01 21 40195934 40195934 A T ETS2 3'UTR 0.35 TCGA-W5-AA38-01 21 46048075 46048075 C T KRTAP10-9 3'UTR 0.33 TCGA-W5-AA38-01 22 31854517 31854517 C A EIF4ENIF1 Nonsense_Mutation p.G303* 0.10 TCGA-W5-AA38-01 3 165547680 165547680 C - BCHE Frame_Shift_Del p.G381Vfs*2 0.11 TCGA-W5-AA38-01 3 182989718 182989718 A C B3GNT5 3'UTR 0.15 TCGA-W5-AA38-01 3 38295697 38295697 G T OXSR1 3'UTR 0.14 TCGA-W5-AA38-01 3 52661362 52661362 T A PBRM1 Nonsense_Mutation p.R490* 0.50 TCGA-W5-AA38-01 4 134071413 134071413 G C PCDH10 Missense_Mutation p.D40H 0.17 deleterious(0) probably_damaging(1) TCGA-W5-AA38-01 6 33236870 33236870 G A VPS52 Nonsense_Mutation p.R157* 0.33 TCGA-W5-AA38-01 7 137339475 137339475 C A DGKI Intron 0.24 TCGA-W5-AA38-01 7 73098119 73098119 G C WBSCR22 Missense_Mutation p.R24P 0.29 deleterious(0.01) possibly_damaging(0.9) TCGA-W5-AA38-01 8 104897649 104897649 T G RIMS2 Silent p.A274A 0.25 TCGA-W5-AA38-01 8 55537426 55537426 C T RP1 Silent p.D328D 0.13 TCGA-W5-AA38-01 9 116135736 116135736 G T HDHD3 3'UTR 0.45 TCGA-W5-AA38-01 X 102967217 102967218 - A TMEM31 Frame_Shift_Ins p.Q12Tfs*8 0.19 TCGA-W5-AA38-01 X 105066711 105066711 C T NRK 5'UTR 0.37 TCGA-W5-AA38-01 X 106844361 106844361 C T FRMPD3 Missense_Mutation p.S1064F 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-W5-AA39-01 10 100219111 100219111 C T HPSE2 3'UTR 0.57 TCGA-W5-AA39-01 10 101464834 101464834 A T ENTPD7 3'UTR 0.33 TCGA-W5-AA39-01 10 101544402 101544402 C A ABCC2 Missense_Mutation p.P24Q 0.44 deleterious(0.03) probably_damaging(0.95) TCGA-W5-AA39-01 10 102723776 102723776 A G FAM178A 3'Flank 0.39 TCGA-W5-AA39-01 10 102822346 102822346 A T KAZALD1 5'UTR 0.50 TCGA-W5-AA39-01 10 102827802 102827802 T G KAZALD1 3'Flank 0.56 TCGA-W5-AA39-01 10 102827805 102827805 T C KAZALD1 3'Flank 0.32 TCGA-W5-AA39-01 10 103577755 103577755 T C MGEA5 Missense_Mutation p.T9A 0.28 tolerated_low_confidence(1) benign(0) TCGA-W5-AA39-01 10 104162749 104162749 T G PSD 3'UTR 0.38 TCGA-W5-AA39-01 10 104180533 104180533 A C FBXL15 5'UTR 0.62 TCGA-W5-AA39-01 10 104574126 104574126 C G WBP1L 3'UTR 0.46 TCGA-W5-AA39-01 10 105197769 105197769 C A PDCD11 Intron 0.28 TCGA-W5-AA39-01 10 10989451 10989451 A G LINC00710 RNA 0.43 TCGA-W5-AA39-01 10 111643856 111643856 A G XPNPEP1 Missense_Mutation p.S267P 0.39 deleterious(0) possibly_damaging(0.85) TCGA-W5-AA39-01 10 114168254 114168254 A C ACSL5 Missense_Mutation p.E225D 0.42 tolerated(0.48) benign(0.101) TCGA-W5-AA39-01 10 115657896 115657896 T C NHLRC2 Missense_Mutation p.L356S 0.40 deleterious(0) probably_damaging(0.996) TCGA-W5-AA39-01 10 121587136 121587136 T A INPP5F Silent p.V1081V 0.38 TCGA-W5-AA39-01 10 123670610 123670610 T C ATE1 Missense_Mutation p.N132D 0.21 tolerated(0.18) benign(0.007) TCGA-W5-AA39-01 10 124758099 124758099 A T IKZF5 Missense_Mutation p.F15I 0.35 deleterious(0) probably_damaging(0.95) TCGA-W5-AA39-01 10 126673937 126673937 A C ZRANB1 3'UTR 0.45 TCGA-W5-AA39-01 10 129350907 129350907 A C NPS 3'UTR 0.41 TCGA-W5-AA39-01 10 134039116 134039116 A C STK32C Missense_Mutation p.H229Q 0.47 deleterious(0.01) probably_damaging(0.955) TCGA-W5-AA39-01 10 135193724 135193724 T C PAOX Missense_Mutation p.Y135H 0.51 tolerated(0.51) benign(0.02) TCGA-W5-AA39-01 10 21805461 21805461 T C SKIDA1 Missense_Mutation p.S431G 0.52 tolerated_low_confidence(0.44) unknown(0) TCGA-W5-AA39-01 10 23393156 23393156 G C MSRB2 Missense_Mutation p.E68Q 0.38 tolerated(0.42) benign(0.385) TCGA-W5-AA39-01 10 27538087 27538087 T C RP11-85G18.6 Intron 0.39 TCGA-W5-AA39-01 10 28196701 28196701 A G ARMC4 Missense_Mutation p.I834T 0.33 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 10 30315724 30315724 G C KIAA1462 Missense_Mutation p.A1118G 0.56 tolerated(0.07) benign(0.258) TCGA-W5-AA39-01 10 32095722 32095734 AATGTAGGGTTAG - ARHGAP12 3'UTR 0.29 TCGA-W5-AA39-01 10 35500212 35500212 G C CREM Intron 0.28 TCGA-W5-AA39-01 10 35500213 35500213 A T CREM Intron 0.28 TCGA-W5-AA39-01 10 35625974 35625974 C A CCNY 5'UTR 0.33 TCGA-W5-AA39-01 10 387246 387246 G T DIP2C Silent p.A1159A 0.34 TCGA-W5-AA39-01 10 43601837 43601837 C T RET Missense_Mutation p.A294V 0.47 tolerated(0.08) possibly_damaging(0.706) TCGA-W5-AA39-01 10 50025455 50025455 G A WDFY4 Splice_Site p.X1835_splice 0.34 TCGA-W5-AA39-01 10 50594744 50594744 G T DRGX Missense_Mutation p.A137E 0.43 deleterious(0.02) benign(0.083) TCGA-W5-AA39-01 10 51590345 51590345 T G NCOA4 3'UTR 0.36 TCGA-W5-AA39-01 10 51592574 51592574 A C TIMM23 Missense_Mutation p.L187R 0.47 deleterious(0) probably_damaging(0.95) TCGA-W5-AA39-01 10 5681768 5681768 G T ASB13 3'UTR 0.60 TCGA-W5-AA39-01 10 5803315 5803315 T C FAM208B Missense_Mutation p.I2352T 0.44 tolerated(0.06) possibly_damaging(0.717) TCGA-W5-AA39-01 10 64566308 64566308 A C ADO 3'UTR 0.19 TCGA-W5-AA39-01 10 64966863 64966863 T A JMJD1C Silent p.V1522V 0.61 TCGA-W5-AA39-01 10 64966945 64966945 T G JMJD1C Missense_Mutation p.K1495T 0.17 tolerated(0.06) possibly_damaging(0.821) TCGA-W5-AA39-01 10 64968449 64968449 T G JMJD1C Silent p.R994R 0.29 TCGA-W5-AA39-01 10 68686686 68686686 T C LRRTM3 Silent p.N4N 0.53 TCGA-W5-AA39-01 10 70243272 70243272 G A SLC25A16 Missense_Mutation p.L306F 0.38 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 10 73569791 73569791 C T CDH23 Silent p.L739L 0.42 TCGA-W5-AA39-01 10 75006528 75006528 T C DNAJC9 Missense_Mutation p.E80G 0.30 deleterious(0) probably_damaging(0.979) TCGA-W5-AA39-01 10 75011619 75011619 T G MRPS16 Missense_Mutation p.N59T 0.41 deleterious(0) probably_damaging(0.993) TCGA-W5-AA39-01 10 75255630 75255630 C A PPP3CB Silent p.P6P 0.56 TCGA-W5-AA39-01 10 77157878 77157878 C G ZNF503 3'UTR 0.36 TCGA-W5-AA39-01 10 79011006 79011006 T G KCNMA1 Missense_Mutation p.L183F 0.30 deleterious(0.01) probably_damaging(0.937) TCGA-W5-AA39-01 10 79800402 79800402 T A RPS24 Intron 0.48 TCGA-W5-AA39-01 10 79800420 79800421 - T RPS24 Intron 0.37 TCGA-W5-AA39-01 10 79814760 79814760 G T RPS24 Missense_Mutation p.G288C 0.50 deleterious_low_confidence(0) unknown(0) TCGA-W5-AA39-01 10 82040501 82040510 ATTGCTGCTC - MAT1A Frame_Shift_Del p.E111Pfs*24 0.20 TCGA-W5-AA39-01 10 85974529 85974529 T G CDHR1 3'UTR 0.28 TCGA-W5-AA39-01 10 89514379 89514379 T G ATAD1 3'UTR 0.55 TCGA-W5-AA39-01 10 89720806 89720807 TT G PTEN Frame_Shift_Del p.L320* 0.29 TCGA-W5-AA39-01 10 93021177 93021177 A G PCGF5 Missense_Mutation p.Y190C 0.41 tolerated(0.18) probably_damaging(0.982) TCGA-W5-AA39-01 10 93390426 93390426 T C PPP1R3C Missense_Mutation p.Q71R 0.54 tolerated(0.53) benign(0.001) TCGA-W5-AA39-01 10 94223499 94223499 T C IDE Missense_Mutation p.N917S 0.42 deleterious(0.02) benign(0.333) TCGA-W5-AA39-01 10 99350107 99350107 T C C10orf62 Silent p.A151A 0.42 TCGA-W5-AA39-01 11 102198793 102198793 T G BIRC3 Missense_Mutation p.L322V 0.34 deleterious(0.01) benign(0.172) TCGA-W5-AA39-01 11 107518233 107518234 - GGATTTCTA ELMOD1 In_Frame_Ins p.R154_S156dup 0.29 TCGA-W5-AA39-01 11 10785962 10785962 T G CTR9 Silent p.L464L 0.38 TCGA-W5-AA39-01 11 10789426 10789426 A C CTR9 Missense_Mutation p.K587T 0.43 deleterious(0) probably_damaging(0.981) TCGA-W5-AA39-01 11 110124822 110124822 A T RDX Missense_Mutation p.Y270N 0.47 tolerated(0.14) benign(0.401) TCGA-W5-AA39-01 11 111179167 111179167 A C COLCA2 3'UTR 0.33 TCGA-W5-AA39-01 11 111385536 111385536 T A C11orf88 Silent p.P9P 0.37 TCGA-W5-AA39-01 11 111749931 111749931 C T FDXACB1 5'Flank 0.38 TCGA-W5-AA39-01 11 111789581 111789581 A C C11orf52 5'Flank 0.43 TCGA-W5-AA39-01 11 111796729 111796729 C A C11orf52 Missense_Mutation p.Q60K 0.21 tolerated(0.14) benign(0.047) TCGA-W5-AA39-01 11 111933226 111933226 G A DLAT Silent p.K637K 0.39 TCGA-W5-AA39-01 11 111954468 111954468 A C C11orf57 3'UTR 0.35 TCGA-W5-AA39-01 11 113230696 113230696 C A TTC12 Missense_Mutation p.S527Y 0.58 deleterious(0.03) benign(0.379) TCGA-W5-AA39-01 11 114121244 114121244 A T ZBTB16 Silent p.I663I 0.62 TCGA-W5-AA39-01 11 115375142 115375142 T C CADM1 5'Flank 0.31 TCGA-W5-AA39-01 11 117030734 117030734 T G PAFAH1B2 Missense_Mutation p.Y56D 0.31 tolerated(0.2) possibly_damaging(0.557) TCGA-W5-AA39-01 11 118365076 118365076 A T KMT2A Missense_Mutation p.K1751I 0.57 possibly_damaging(0.883) TCGA-W5-AA39-01 11 118395087 118395087 C G KMT2A 3'UTR 0.43 TCGA-W5-AA39-01 11 118621764 118621766 AAT - DDX6 3'UTR 0.09 TCGA-W5-AA39-01 11 118983266 118983266 C T C2CD2L Missense_Mutation p.L387F 0.50 deleterious(0) probably_damaging(0.994) TCGA-W5-AA39-01 11 119243852 119243852 G A USP2 Silent p.F113F 0.44 TCGA-W5-AA39-01 11 120957511 120957511 T C TBCEL Silent p.Y327Y 0.12 TCGA-W5-AA39-01 11 122931947 122931947 A C HSPA8 Missense_Mutation p.I29S 0.61 deleterious_low_confidence(0) probably_damaging(1) TCGA-W5-AA39-01 11 126073274 126073274 T G RPUSD4 3'UTR 0.31 TCGA-W5-AA39-01 11 126163799 126163799 G T TIRAP 3'Flank 0.57 TCGA-W5-AA39-01 11 1263842 1263842 C G MUC5B Missense_Mutation p.T1911S 0.44 unknown(0) TCGA-W5-AA39-01 11 1280229 1280229 G T MUC5B Missense_Mutation p.D5551Y 0.36 unknown(0) TCGA-W5-AA39-01 11 130731697 130731697 C T RP11-890B15.2 RNA 0.35 TCGA-W5-AA39-01 11 132206150 132206155 TGTATA - NTM 3'Flank 0.33 TCGA-W5-AA39-01 11 133802005 133802005 G A IGSF9B Silent p.V357V 0.53 TCGA-W5-AA39-01 11 13408419 13408419 A G ARNTL 3'UTR 0.50 TCGA-W5-AA39-01 11 15096669 15096669 T G CALCB Missense_Mutation p.L50R 0.41 deleterious(0) probably_damaging(0.993) TCGA-W5-AA39-01 11 27518914 27518914 A C LIN7C 3'UTR 0.39 TCGA-W5-AA39-01 11 30255127 30255127 A G FSHB Missense_Mutation p.Y57C 0.25 tolerated(0.1) benign(0.011) TCGA-W5-AA39-01 11 33094146 33094146 G A TCP11L1 Missense_Mutation p.R485H 0.24 deleterious(0.05) probably_damaging(1) TCGA-W5-AA39-01 11 34074072 34074072 C T CAPRIN1 Silent p.A35A 0.47 TCGA-W5-AA39-01 11 3774554 3774554 A C NUP98 Missense_Mutation p.F420C 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-W5-AA39-01 11 3774605 3774605 A C NUP98 Missense_Mutation p.F403C 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-W5-AA39-01 11 3794890 3794913 ATAGCAGTAATACACTGGTGCTTG - NUP98 In_Frame_Del p.H186_K193del 0.14 TCGA-W5-AA39-01 11 47256385 47256385 A G DDB2 Silent p.T260T 0.47 TCGA-W5-AA39-01 11 47256429 47256429 T G DDB2 Missense_Mutation p.V275G 0.38 deleterious(0) possibly_damaging(0.61) TCGA-W5-AA39-01 11 47464331 47464331 C G RAPSN Silent p.A189A 0.43 TCGA-W5-AA39-01 11 47594521 47594521 A C KBTBD4 Missense_Mutation p.I522M 0.23 tolerated_low_confidence(0.16) benign(0.313) TCGA-W5-AA39-01 11 4870320 4870320 A C OR51S1 Missense_Mutation p.I40S 0.30 tolerated(0.11) benign(0.086) TCGA-W5-AA39-01 11 488603 488603 G A PTDSS2 Silent p.L270L 0.39 TCGA-W5-AA39-01 11 5537846 5537846 T C UBQLNL 5'UTR 0.39 TCGA-W5-AA39-01 11 57509283 57509283 C G C11orf31 Missense_Mutation p.T42S 0.12 tolerated(0.52) benign(0.192) TCGA-W5-AA39-01 11 57569260 57569260 C T CTNND1 Missense_Mutation p.P338S 0.44 tolerated(0.06) probably_damaging(0.947) TCGA-W5-AA39-01 11 59554567 59554567 A T STX3 Nonsense_Mutation p.K58* 0.19 TCGA-W5-AA39-01 11 60689788 60689788 A C TMEM109 3'UTR 0.59 TCGA-W5-AA39-01 11 61567410 61567410 G A FADS1 3'UTR 0.44 TCGA-W5-AA39-01 11 61584238 61584238 C A FADS1 Missense_Mutation p.R55M 0.38 tolerated(0.07) possibly_damaging(0.702) TCGA-W5-AA39-01 11 62299800 62299800 T A AHNAK Missense_Mutation p.I697F 0.56 possibly_damaging(0.578) TCGA-W5-AA39-01 11 62437484 62437484 C T C11orf48 Missense_Mutation p.R7K 0.32 tolerated_low_confidence(0.73) benign(0) TCGA-W5-AA39-01 11 62649510 62649510 C A SLC3A2 Missense_Mutation p.D292E 0.36 tolerated(0.75) benign(0) TCGA-W5-AA39-01 11 63994325 63994325 C G NUDT22 Silent p.T67T 0.39 TCGA-W5-AA39-01 11 64514795 64514795 T G PYGM Missense_Mutation p.E738A 0.60 deleterious(0.04) probably_damaging(0.998) TCGA-W5-AA39-01 11 64679638 64679638 G C ATG2A Missense_Mutation p.Q336E 0.50 tolerated(0.1) benign(0.003) TCGA-W5-AA39-01 11 64894686 64894686 A C MRPL49 3'UTR 0.44 TCGA-W5-AA39-01 11 64950279 64950279 A C CAPN1 Missense_Mutation p.K36T 0.53 deleterious(0.01) possibly_damaging(0.66) TCGA-W5-AA39-01 11 65266585 65266585 A C MALAT1 RNA 0.44 TCGA-W5-AA39-01 11 65268621 65268621 T C MALAT1 RNA 0.52 TCGA-W5-AA39-01 11 65268625 65268625 T G MALAT1 RNA 0.55 TCGA-W5-AA39-01 11 65305890 65305890 G T SCYL1 Intron 0.57 TCGA-W5-AA39-01 11 65416935 65416935 T G SIPA1 Missense_Mutation p.S837A 0.38 tolerated(0.26) benign(0.013) TCGA-W5-AA39-01 11 65480106 65480106 C G KAT5 Intron 0.45 TCGA-W5-AA39-01 11 65659779 65659779 G A FOSL1 3'UTR 0.44 TCGA-W5-AA39-01 11 65820161 65820161 G A SF3B2 Missense_Mutation p.V51M 0.38 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-W5-AA39-01 11 66114615 66114615 C A B3GNT1 Silent p.L134L 0.47 TCGA-W5-AA39-01 11 66203493 66203493 T G MRPL11 Missense_Mutation p.E188D 0.27 tolerated(0.11) possibly_damaging(0.525) TCGA-W5-AA39-01 11 6637270 6637270 T G TPP1 Silent p.R371R 0.42 TCGA-W5-AA39-01 11 66410945 66410945 C T RBM14-RBM4 Missense_Mutation p.S121F 0.42 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 11 67186527 67186527 A G CARNS1 Missense_Mutation p.Q222R 0.36 tolerated(0.15) benign(0.005) TCGA-W5-AA39-01 11 67378874 67378874 G C NDUFV1 Missense_Mutation p.G305A 0.46 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-W5-AA39-01 11 67933317 67933317 T C SUV420H1 Intron 0.25 TCGA-W5-AA39-01 11 6943064 6943064 C T OR2D3 Missense_Mutation p.P278S 0.40 deleterious(0.01) possibly_damaging(0.901) TCGA-W5-AA39-01 11 70332549 70332549 C T SHANK2 Silent p.E1284E 0.45 TCGA-W5-AA39-01 11 71939417 71939417 G A INPPL1 Missense_Mutation p.R91H 0.11 tolerated(0.56) probably_damaging(0.961) TCGA-W5-AA39-01 11 73427372 73427372 C G RAB6A Missense_Mutation p.D109H 0.50 deleterious(0) possibly_damaging(0.719) TCGA-W5-AA39-01 11 73679407 73679407 A G DNAJB13 Silent p.P208P 0.27 TCGA-W5-AA39-01 11 7669733 7669733 A C PPFIBP2 Missense_Mutation p.T588P 0.70 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 11 76885944 76885944 A C MYO7A Missense_Mutation p.K693T 0.38 tolerated(0.55) probably_damaging(0.948) TCGA-W5-AA39-01 11 76954813 76954813 G A GDPD4 Silent p.S389S 0.31 TCGA-W5-AA39-01 11 82877696 82877696 A G PCF11 Missense_Mutation p.E586G 0.32 deleterious(0.05) benign(0.084) TCGA-W5-AA39-01 11 82877707 82877707 A C PCF11 Missense_Mutation p.S590R 0.41 tolerated(0.14) benign(0.347) TCGA-W5-AA39-01 11 82877714 82877714 A C PCF11 Missense_Mutation p.K592T 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-W5-AA39-01 11 82877732 82877732 A C PCF11 Missense_Mutation p.K598T 0.35 deleterious(0) probably_damaging(0.972) TCGA-W5-AA39-01 11 82877755 82877755 A C PCF11 Missense_Mutation p.S606R 0.46 tolerated(0.08) benign(0.218) TCGA-W5-AA39-01 11 82935942 82935942 T G ANKRD42 Missense_Mutation p.L183R 0.41 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 11 85347322 85347322 G A TMEM126B 3'UTR 0.57 TCGA-W5-AA39-01 11 85630420 85630420 T A CCDC83 Missense_Mutation p.V401E 0.42 deleterious(0.01) probably_damaging(0.964) TCGA-W5-AA39-01 11 9047293 9047293 C T SCUBE2 Missense_Mutation p.G880E 0.42 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 11 93469419 93469419 A C TAF1D Missense_Mutation p.L249V 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.554) TCGA-W5-AA39-01 11 93886741 93886741 A T PANX1 Missense_Mutation p.Q89L 0.50 tolerated(0.48) probably_damaging(0.988) TCGA-W5-AA39-01 11 9801363 9801363 G A SBF2 3'UTR 0.22 TCGA-W5-AA39-01 12 101705835 101705835 T C UTP20 Missense_Mutation p.M778T 0.58 tolerated(0.57) benign(0) TCGA-W5-AA39-01 12 108051561 108051561 A C BTBD11 3'UTR 0.53 TCGA-W5-AA39-01 12 108145645 108145645 T C PRDM4 Missense_Mutation p.I225V 0.29 tolerated_low_confidence(0.21) benign(0.014) TCGA-W5-AA39-01 12 109273986 109273986 A G DAO 5'UTR 0.64 TCGA-W5-AA39-01 12 10962375 10962375 A C TAS2R9 Silent p.T100T 0.30 TCGA-W5-AA39-01 12 10962389 10962389 T G TAS2R9 Missense_Mutation p.S96R 0.35 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 12 110459015 110459015 A C ANKRD13A Intron 0.31 TCGA-W5-AA39-01 12 112464651 112464651 A C NAA25 3'UTR 0.50 TCGA-W5-AA39-01 12 113664590 113664590 G A TPCN1 Missense_Mutation p.R50K 0.32 tolerated_low_confidence(0.26) benign(0.14) TCGA-W5-AA39-01 12 115114210 115114210 G T TBX3 Missense_Mutation p.S336Y 0.39 deleterious(0) probably_damaging(0.933) TCGA-W5-AA39-01 12 116397157 116397157 G C MED13L 3'UTR 0.35 TCGA-W5-AA39-01 12 120649932 120649932 G C PXN 3'UTR 0.59 TCGA-W5-AA39-01 12 121136731 121136731 G A MLEC 3'UTR 0.30 TCGA-W5-AA39-01 12 121448886 121448886 T G C12orf43 Intron 0.37 TCGA-W5-AA39-01 12 121675524 121675524 A C CAMKK2 3'UTR 0.56 TCGA-W5-AA39-01 12 122243775 122243775 A G SETD1B Missense_Mutation p.K103R 0.42 possibly_damaging(0.598) TCGA-W5-AA39-01 12 122326825 122326825 C T PSMD9 Silent p.S21S 0.09 TCGA-W5-AA39-01 12 12279634 12279634 A T LRP6 Missense_Mutation p.S1435T 0.39 tolerated(0.58) benign(0.006) TCGA-W5-AA39-01 12 12279840 12279840 G A LRP6 Missense_Mutation p.P1366L 0.35 tolerated(0.23) benign(0.006) TCGA-W5-AA39-01 12 12291295 12291295 T C LRP6 Missense_Mutation p.I1191V 0.53 tolerated(0.09) benign(0.015) TCGA-W5-AA39-01 12 122973962 122973962 C T ZCCHC8 Missense_Mutation p.A158T 0.41 tolerated(0.74) benign(0.001) TCGA-W5-AA39-01 12 129566387 129566387 T A TMEM132D Missense_Mutation p.M614L 0.29 tolerated(0.45) benign(0.011) TCGA-W5-AA39-01 12 133202837 133202837 C A POLE Missense_Mutation p.V2133L 0.40 tolerated(0.16) benign(0.007) TCGA-W5-AA39-01 12 23686256 23686256 T G SOX5 3'UTR 0.36 TCGA-W5-AA39-01 12 26816634 26816634 T A ITPR2 Missense_Mutation p.D566V 0.42 deleterious(0) probably_damaging(0.958) TCGA-W5-AA39-01 12 27850220 27850220 T G REP15 3'UTR 0.24 TCGA-W5-AA39-01 12 29639246 29639246 A C OVCH1 Missense_Mutation p.S310A 0.43 tolerated(0.74) benign(0.001) TCGA-W5-AA39-01 12 31256769 31256769 G A DDX11 Silent p.L905L 0.51 TCGA-W5-AA39-01 12 46754028 46754028 T - SLC38A2 3'UTR 0.38 TCGA-W5-AA39-01 12 48131422 48131422 A T RAPGEF3 Silent p.A900A 0.37 TCGA-W5-AA39-01 12 48499359 48499359 A C PFKM 5'Flank 0.43 TCGA-W5-AA39-01 12 48501972 48501972 A C PFKM Missense_Mutation p.K67T 0.36 tolerated(0.54) benign(0) TCGA-W5-AA39-01 12 49330348 49330350 CTT - ARF3 3'UTR 0.26 TCGA-W5-AA39-01 12 49483683 49483683 A G DHH Missense_Mutation p.S384P 0.46 tolerated(0.31) benign(0.096) TCGA-W5-AA39-01 12 50504718 50504718 A T GPD1 3'UTR 0.33 TCGA-W5-AA39-01 12 50855117 50855117 T C LARP4 Missense_Mutation p.Y441H 0.42 tolerated(0.22) possibly_damaging(0.756) TCGA-W5-AA39-01 12 52281970 52281970 T C ANKRD33 5'UTR 0.23 TCGA-W5-AA39-01 12 52377793 52377793 C A ACVR1B Silent p.T315T 0.51 TCGA-W5-AA39-01 12 52757179 52757179 G T KRT85 Missense_Mutation p.Q268K 0.53 deleterious(0) benign(0.061) TCGA-W5-AA39-01 12 52757180 52757180 G T KRT85 Silent p.L267L 0.56 TCGA-W5-AA39-01 12 53604844 53604844 G A RARG 3'UTR 0.53 TCGA-W5-AA39-01 12 54424531 54424531 T A HOXC6 3'UTR 0.40 TCGA-W5-AA39-01 12 56215774 56215774 G A DNAJC14 Missense_Mutation p.P699L 0.47 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 12 56361718 56361718 A G CDK2 Missense_Mutation p.K65R 0.40 tolerated(1) benign(0.002) TCGA-W5-AA39-01 12 56578658 56578658 C T SMARCC2 Silent p.G154G 0.34 TCGA-W5-AA39-01 12 56743381 56743381 T A STAT2 Missense_Mutation p.S417C 0.35 tolerated(0.08) benign(0.02) TCGA-W5-AA39-01 12 56822671 56822671 G A TIMELESS Missense_Mutation p.R434C 0.29 tolerated(0.06) benign(0.028) TCGA-W5-AA39-01 12 57113439 57113439 A C NACA Intron 0.32 TCGA-W5-AA39-01 12 57395440 57395440 A C ZBTB39 3'UTR 0.48 TCGA-W5-AA39-01 12 57584755 57584755 A C LRP1 Missense_Mutation p.K2400T 0.42 probably_damaging(0.999) TCGA-W5-AA39-01 12 57619423 57619423 T G NXPH4 Missense_Mutation p.F274V 0.58 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 12 64505656 64505656 T C SRGAP1 Silent p.H678H 0.59 TCGA-W5-AA39-01 12 65641136 65641136 T G LEMD3 3'UTR 0.38 TCGA-W5-AA39-01 12 7177759 7177759 G A C1S Missense_Mutation p.G624D 0.57 deleterious(0) possibly_damaging(0.744) TCGA-W5-AA39-01 12 72057114 72057114 A G ZFC3H1 Missense_Mutation p.S93P 0.38 tolerated_low_confidence(0.43) benign(0.307) TCGA-W5-AA39-01 12 74932028 74932028 T G ATXN7L3B Missense_Mutation p.F46V 0.36 deleterious_low_confidence(0.04) benign(0.104) TCGA-W5-AA39-01 12 74932077 74932077 A C ATXN7L3B Missense_Mutation p.Q62P 0.37 tolerated_low_confidence(0.1) benign(0) TCGA-W5-AA39-01 12 76441052 76441052 A C NAP1L1 3'UTR 0.54 TCGA-W5-AA39-01 12 79685872 79685872 C T SYT1 Missense_Mutation p.L146F 0.33 deleterious(0) possibly_damaging(0.896) TCGA-W5-AA39-01 12 89916734 89916734 C T GALNT4 Nonsense_Mutation p.W531* 0.45 TCGA-W5-AA39-01 12 89917207 89917207 T C GALNT4 Missense_Mutation p.N374D 0.26 deleterious(0) benign(0.37) TCGA-W5-AA39-01 12 96883547 96883547 G C C12orf55 Missense_Mutation p.D54H 0.39 tolerated_low_confidence(0.13) benign(0.049) TCGA-W5-AA39-01 13 101320946 101320946 G A TMTC4 Missense_Mutation p.L36F 0.39 tolerated(0.18) benign(0.317) TCGA-W5-AA39-01 13 103383698 103383698 G T CCDC168 Missense_Mutation p.T1821N 0.31 tolerated(0.07) unknown(0) TCGA-W5-AA39-01 13 107142541 107142541 C G EFNB2 3'UTR 0.41 TCGA-W5-AA39-01 13 107195802 107195802 A G ARGLU1 3'UTR 0.35 TCGA-W5-AA39-01 13 115090640 115090640 A C CHAMP1 Missense_Mutation p.K441N 0.48 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 13 21751565 21751565 T G MRP63 3'UTR 0.38 TCGA-W5-AA39-01 13 25743714 25743714 G A AMER2 3'UTR 0.36 TCGA-W5-AA39-01 13 27669906 27669906 T G USP12 Silent p.T135T 0.38 TCGA-W5-AA39-01 13 31205128 31205128 A G USPL1 Missense_Mutation p.I129V 0.44 tolerated(0.53) benign(0.009) TCGA-W5-AA39-01 13 37583918 37583918 G A SUPT20H Missense_Mutation p.A744V 0.56 tolerated(0.42) benign(0.042) TCGA-W5-AA39-01 13 39584707 39584707 T G PROSER1 3'UTR 0.42 TCGA-W5-AA39-01 13 41130711 41130711 A C FOXO1 3'UTR 0.50 TCGA-W5-AA39-01 13 41636805 41636805 A C WBP4 Missense_Mutation p.K10Q 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-W5-AA39-01 13 42357983 42357983 T G VWA8 Missense_Mutation p.N742T 0.24 tolerated(0.14) benign(0.028) TCGA-W5-AA39-01 13 46802187 46802187 C T LRRC63 Missense_Mutation p.S209F 0.43 deleterious(0.02) possibly_damaging(0.896) TCGA-W5-AA39-01 13 49783340 49783340 T G FNDC3A 3'UTR 0.34 TCGA-W5-AA39-01 13 52539138 52539138 T A ATP7B Missense_Mutation p.H580L 0.35 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 13 52598853 52598853 G A ALG11 Silent p.K329K 0.43 TCGA-W5-AA39-01 13 52603174 52603174 A C UTP14C Missense_Mutation p.E78D 0.45 tolerated(0.12) benign(0.35) TCGA-W5-AA39-01 13 95248410 95248410 T A TGDS 5'UTR 0.38 TCGA-W5-AA39-01 14 103410551 103410551 G A CDC42BPB Missense_Mutation p.P1362L 0.33 tolerated(0.17) probably_damaging(1) TCGA-W5-AA39-01 14 106382684 106382684 G T KIAA0125 5'Flank 0.41 TCGA-W5-AA39-01 14 106391361 106391361 T A KIAA0125 3'Flank 0.29 TCGA-W5-AA39-01 14 106993973 106993973 C T IGHV3-48 Silent p.L64L 0.49 TCGA-W5-AA39-01 14 20216384 20216384 C G OR4Q3 Missense_Mutation p.F266L 0.19 tolerated(0.27) benign(0.013) TCGA-W5-AA39-01 14 20295956 20295956 G T OR4N2 Missense_Mutation p.V117L 0.23 deleterious(0.04) benign(0.08) TCGA-W5-AA39-01 14 23416891 23416891 C T HAUS4 Missense_Mutation p.R253Q 0.52 deleterious(0.01) benign(0.214) TCGA-W5-AA39-01 14 23568972 23568972 A G C14orf119 3'UTR 0.32 TCGA-W5-AA39-01 14 23842032 23842032 T G IL25 5'Flank 0.20 TCGA-W5-AA39-01 14 24532678 24532678 G A LRRC16B Missense_Mutation p.R972K 0.71 tolerated(0.15) benign(0.158) TCGA-W5-AA39-01 14 24777048 24777048 G T CIDEB Missense_Mutation p.A6D 0.28 tolerated(0.31) benign(0.111) TCGA-W5-AA39-01 14 24777141 24777141 T C NOP9 3'UTR 0.33 TCGA-W5-AA39-01 14 24786984 24786984 C G LTB4R 3'UTR 0.35 TCGA-W5-AA39-01 14 24896958 24896958 C T CBLN3 3'UTR 0.50 TCGA-W5-AA39-01 14 31097418 31097418 C G SCFD1 Missense_Mutation p.A22G 0.35 deleterious(0.05) benign(0.058) TCGA-W5-AA39-01 14 35468824 35468824 A G SRP54 Missense_Mutation p.K47E 0.53 tolerated(0.06) benign(0.015) TCGA-W5-AA39-01 14 35515667 35515667 A G FAM177A1 5'UTR 0.38 TCGA-W5-AA39-01 14 38016214 38016214 T C MIPOL1 3'UTR 0.45 TCGA-W5-AA39-01 14 38059445 38059445 T C FOXA1 3'UTR 0.45 TCGA-W5-AA39-01 14 39651594 39651594 G T PNN 3'UTR 0.24 TCGA-W5-AA39-01 14 45583442 45583442 A C PRPF39 Missense_Mutation p.K605T 0.35 deleterious(0) probably_damaging(0.969) TCGA-W5-AA39-01 14 50789296 50789296 G T ATP5S Missense_Mutation p.G74W 0.29 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 14 50809635 50809635 A G CDKL1 Intron 0.69 TCGA-W5-AA39-01 14 52781389 52781389 A G PTGER2 Missense_Mutation p.I41M 0.53 tolerated(0.14) benign(0.05) TCGA-W5-AA39-01 14 54418732 54418732 C G BMP4 Missense_Mutation p.R70P 0.62 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 14 55169112 55169112 T C SAMD4A Missense_Mutation p.Y177H 0.48 tolerated(0.27) benign(0.003) TCGA-W5-AA39-01 14 64565493 64565493 T A SYNE2 Missense_Mutation p.L4112Q 0.43 probably_damaging(0.973) TCGA-W5-AA39-01 14 65406264 65406264 G C GPX2 Missense_Mutation p.T172S 0.46 tolerated(0.26) benign(0) TCGA-W5-AA39-01 14 67799972 67799972 C T MPP5 3'UTR 0.33 TCGA-W5-AA39-01 14 69261976 69261976 G A ZFP36L1 5'Flank 0.27 TCGA-W5-AA39-01 14 70175521 70175521 G A KIAA0247 Missense_Mutation p.V196I 0.33 tolerated(0.08) benign(0.078) TCGA-W5-AA39-01 14 70839843 70839843 C T SYNJ2BP Silent p.Q101Q 0.41 TCGA-W5-AA39-01 14 70924269 70924269 G T ADAM21 Missense_Mutation p.W18L 0.50 deleterious(0.02) benign(0.016) TCGA-W5-AA39-01 14 74163086 74163086 T G DNAL1 3'UTR 0.51 TCGA-W5-AA39-01 14 74189546 74189546 T G ELMSAN1 Missense_Mutation p.Q860P 0.40 deleterious(0.01) benign(0.125) TCGA-W5-AA39-01 14 74387683 74387683 G A ZNF410 Missense_Mutation p.G352E 0.29 tolerated(0.05) benign(0.375) TCGA-W5-AA39-01 14 77564616 77564616 G C CIPC 5'UTR 0.34 TCGA-W5-AA39-01 14 79111601 79111601 C T NRXN3 5'UTR 0.64 TCGA-W5-AA39-01 14 89625205 89625205 T A FOXN3 3'UTR 0.33 TCGA-W5-AA39-01 14 90263512 90263512 T G EFCAB11 3'UTR 0.32 TCGA-W5-AA39-01 14 90736595 90736609 CGCATCTTTCAGATT - PSMC1 In_Frame_Del p.R363_I367del 0.29 TCGA-W5-AA39-01 14 91633873 91633873 A G C14orf159 Intron 0.71 TCGA-W5-AA39-01 14 94401066 94401066 A G ASB2 Missense_Mutation p.L615P 0.43 tolerated(0.15) probably_damaging(0.974) TCGA-W5-AA39-01 14 95569702 95569702 G A DICER1 Missense_Mutation p.S1344L 0.43 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 14 95569703 95569703 A T DICER1 Missense_Mutation p.S1344T 0.42 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 15 23931983 23931983 C T NDN Missense_Mutation p.V128I 0.52 tolerated(0.17) probably_damaging(0.996) TCGA-W5-AA39-01 15 25321133 25321133 A G SNORD116-11 RNA 0.51 TCGA-W5-AA39-01 15 25653807 25653807 C T UBE3A 5'Flank 0.42 TCGA-W5-AA39-01 15 33256352 33256352 T G FMN1 Missense_Mutation p.K809Q 0.40 deleterious(0.03) probably_damaging(0.994) TCGA-W5-AA39-01 15 35274078 35274078 T G ZNF770 Silent p.R520R 0.35 TCGA-W5-AA39-01 15 37329152 37329152 A C MEIS2 Missense_Mutation p.L255V 0.32 tolerated(0.2) benign(0.411) TCGA-W5-AA39-01 15 38644597 38644597 G T SPRED1 3'UTR 0.26 TCGA-W5-AA39-01 15 38992028 38992028 T C C15orf53 3'UTR 0.35 TCGA-W5-AA39-01 15 40568758 40568758 C A PAK6 3'UTR 0.43 TCGA-W5-AA39-01 15 40628778 40628778 C T C15orf52 Missense_Mutation p.R339Q 0.44 deleterious(0.02) probably_damaging(1) TCGA-W5-AA39-01 15 42168834 42168834 T C SPTBN5 Missense_Mutation p.Q1288R 0.56 benign(0.033) TCGA-W5-AA39-01 15 42363325 42363325 C A PLA2G4D Missense_Mutation p.W624C 0.49 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 15 42566673 42566673 A G GANC 5'UTR 0.36 TCGA-W5-AA39-01 15 45007705 45007705 A C B2M Missense_Mutation p.H51P 0.33 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 15 48580290 48580290 A T SLC12A1 Nonsense_Mutation p.K894* 0.43 TCGA-W5-AA39-01 15 52242142 52242142 C T LEO1 Missense_Mutation p.R554H 0.53 deleterious(0) probably_damaging(0.932) TCGA-W5-AA39-01 15 58247324 58247324 A G ALDH1A2 3'UTR 0.39 TCGA-W5-AA39-01 15 65808147 65808147 G T DPP8 5'UTR 0.56 TCGA-W5-AA39-01 15 68480249 68480249 T G PIAS1 3'UTR 0.41 TCGA-W5-AA39-01 15 74373075 74373075 A G GOLGA6A Missense_Mutation p.L29P 0.14 deleterious(0) possibly_damaging(0.571) TCGA-W5-AA39-01 15 75932170 75932170 C T IMP3 Missense_Mutation p.V114M 0.41 deleterious(0.04) possibly_damaging(0.473) TCGA-W5-AA39-01 15 75966950 75966950 A G CSPG4 3'UTR 0.33 TCGA-W5-AA39-01 15 75968341 75968341 C T CSPG4 Silent p.V2173V 0.49 TCGA-W5-AA39-01 15 76632810 76632810 C A ISL2 Silent p.I235I 0.33 TCGA-W5-AA39-01 15 77450866 77450885 TACAAGGGTTCGGGTCCATA - PEAK1 Frame_Shift_Del p.M1098Cfs*10 0.33 TCGA-W5-AA39-01 15 78582401 78582401 A G WDR61 Silent p.Y120Y 0.50 TCGA-W5-AA39-01 15 79271298 79271298 A G RASGRF1 Intron 0.44 TCGA-W5-AA39-01 15 80429825 80429825 T G ZFAND6 Missense_Mutation p.F161C 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-W5-AA39-01 15 80464579 80464579 A G FAH Missense_Mutation p.N232S 0.43 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 15 81614763 81614763 G C STARD5 Missense_Mutation p.Q90E 0.59 tolerated(1) benign(0) TCGA-W5-AA39-01 15 83502304 83502304 A T WHAMM 3'UTR 0.45 TCGA-W5-AA39-01 15 89911321 89911321 A C MIR9-3 RNA 0.53 TCGA-W5-AA39-01 15 90431760 90431760 A G AP3S2 Missense_Mutation p.L89P 0.58 deleterious(0) probably_damaging(0.996) TCGA-W5-AA39-01 15 90431767 90431767 A C AP3S2 Missense_Mutation p.L87V 0.82 deleterious(0) probably_damaging(0.986) TCGA-W5-AA39-01 15 96880964 96880964 T G NR2F2 3'UTR 0.42 TCGA-W5-AA39-01 16 1413179 1413179 G T GNPTG 3'UTR 0.31 TCGA-W5-AA39-01 16 18865012 18865012 T G SMG1 Missense_Mutation p.N1554T 0.29 tolerated(0.08) probably_damaging(0.954) TCGA-W5-AA39-01 16 19129115 19129115 T C ITPRIPL2 3'UTR 0.22 TCGA-W5-AA39-01 16 2011155 2011155 A C NDUFB10 Missense_Mutation p.E44D 0.35 tolerated(0.32) probably_damaging(0.973) TCGA-W5-AA39-01 16 2030477 2030477 A G NOXO1 Missense_Mutation p.Y103H 0.62 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 16 20451133 20451133 A C ACSM5 Silent p.A516A 0.31 TCGA-W5-AA39-01 16 2052709 2052709 A G ZNF598 Missense_Mutation p.Y164H 0.62 probably_damaging(1) TCGA-W5-AA39-01 16 20554487 20554487 C T ACSM2B Missense_Mutation p.G460E 0.32 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 16 2069574 2069574 G A NPW 5'UTR 0.36 TCGA-W5-AA39-01 16 20808098 20808098 A C ERI2 3'UTR 0.28 TCGA-W5-AA39-01 16 20871607 20871607 T - DCUN1D3 Frame_Shift_Del p.A173Pfs*32 0.41 TCGA-W5-AA39-01 16 2233907 2233907 G T CASKIN1 Missense_Mutation p.F484L 0.40 probably_damaging(0.991) TCGA-W5-AA39-01 16 2314620 2314620 T C RNPS1 Missense_Mutation p.K9E 0.61 deleterious_low_confidence(0.04) unknown(0) TCGA-W5-AA39-01 16 23578342 23578342 A C UBFD1 Missense_Mutation p.K257N 0.33 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 16 24826538 24826538 T G TNRC6A Silent p.T1581T 0.79 TCGA-W5-AA39-01 16 24837114 24837114 G T TNRC6A 3'UTR 0.41 TCGA-W5-AA39-01 16 27215364 27215364 C T KDM8 5'UTR 0.08 TCGA-W5-AA39-01 16 28468222 28468222 T A NPIPB7 Silent p.I256I 0.29 TCGA-W5-AA39-01 16 28620633 28620640 CCCCTCAC - SULT1A1 Intron 0.25 TCGA-W5-AA39-01 16 29706151 29706151 C G QPRT Missense_Mutation p.F60L 0.44 deleterious(0.03) benign(0.062) TCGA-W5-AA39-01 16 29874145 29874145 T C CDIPT Missense_Mutation p.N12D 0.45 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 16 29912248 29912248 G A ASPHD1 5'UTR 0.38 TCGA-W5-AA39-01 16 30369466 30369486 CCGCTCCTTCTCCTGTTTCTG - TBC1D10B In_Frame_Del p.Q736_R742del 0.24 TCGA-W5-AA39-01 16 30734428 30734428 C T SRCAP Missense_Mutation p.P1346L 0.44 possibly_damaging(0.713) TCGA-W5-AA39-01 16 31201095 31201095 C G FUS Missense_Mutation p.A349G 0.41 deleterious(0) benign(0.084) TCGA-W5-AA39-01 16 31734032 31734052 GGGATGTGATGTTAGAGAACT - ZNF720 In_Frame_Del p.G30_Y37delinsD 0.37 TCGA-W5-AA39-01 16 3194255 3194255 T G CASP16 5'UTR 0.46 TCGA-W5-AA39-01 16 3194474 3194474 T G CASP16 5'UTR 0.45 TCGA-W5-AA39-01 16 334725 334725 T C PDIA2 Missense_Mutation p.L158P 0.28 deleterious(0) probably_damaging(0.996) TCGA-W5-AA39-01 16 3434880 3434880 A G ZSCAN32 Silent p.S59S 0.50 TCGA-W5-AA39-01 16 34624256 34624256 C T RP11-488I20.3 RNA 0.30 TCGA-W5-AA39-01 16 3656611 3656611 C A SLX4 Missense_Mutation p.L208F 0.55 deleterious(0) probably_damaging(0.972) TCGA-W5-AA39-01 16 4815793 4815793 C G ZNF500 Missense_Mutation p.G63R 0.40 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 16 48576176 48576176 T C N4BP1 3'UTR 0.62 TCGA-W5-AA39-01 16 4920542 4920542 A G UBN1 Missense_Mutation p.Q446R 0.45 tolerated(0.1) probably_damaging(0.996) TCGA-W5-AA39-01 16 50069844 50069844 T G CNEP1R1 3'UTR 0.40 TCGA-W5-AA39-01 16 50733483 50733483 T G NOD2 Missense_Mutation p.F53C 0.44 deleterious(0) probably_damaging(0.992) TCGA-W5-AA39-01 16 51170527 51170527 A C SALL1 3'UTR 0.36 TCGA-W5-AA39-01 16 53358880 53358880 G A CHD9 3'UTR 0.37 TCGA-W5-AA39-01 16 54317248 54317248 A G IRX3 3'UTR 0.45 TCGA-W5-AA39-01 16 56487225 56487225 T A OGFOD1 Missense_Mutation p.F69I 0.43 deleterious(0) possibly_damaging(0.486) TCGA-W5-AA39-01 16 56693135 56693135 T G MT1F 3'UTR 0.50 TCGA-W5-AA39-01 16 57719585 57719585 C T GPR97 Silent p.Y429Y 0.52 TCGA-W5-AA39-01 16 57822591 57822591 C T KIFC3 Intron 0.35 TCGA-W5-AA39-01 16 58019375 58019375 G A TEPP Missense_Mutation p.C253Y 0.35 deleterious_low_confidence(0.03) benign(0.163) TCGA-W5-AA39-01 16 66647062 66647062 T A CMTM3 3'UTR 0.36 TCGA-W5-AA39-01 16 67319000 67319000 T G PLEKHG4 Missense_Mutation p.C693G 0.44 tolerated(0.5) benign(0) TCGA-W5-AA39-01 16 67920262 67920262 T C NRN1L 3'UTR 0.47 TCGA-W5-AA39-01 16 68263315 68263315 G T ESRP2 3'UTR 0.53 TCGA-W5-AA39-01 16 68263318 68263318 T C ESRP2 3'UTR 0.30 TCGA-W5-AA39-01 16 68380156 68380156 T C PRMT7 Silent p.T388T 0.47 TCGA-W5-AA39-01 16 69370532 69370532 T A COG8 Missense_Mutation p.E154V 0.24 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 16 698408 698408 G T FAM195A 3'UTR 0.40 TCGA-W5-AA39-01 16 69874107 69874107 T A WWP2 Missense_Mutation p.F140Y 0.47 tolerated(0.84) benign(0.197) TCGA-W5-AA39-01 16 70404165 70404165 A C DDX19A Missense_Mutation p.K354Q 0.56 tolerated(0.78) benign(0.017) TCGA-W5-AA39-01 16 71668439 71668439 C G MARVELD3 Intron 0.38 TCGA-W5-AA39-01 16 71901864 71901864 G A ZNF821 Silent p.G39G 0.22 TCGA-W5-AA39-01 16 72831573 72831573 T C ZFHX3 Missense_Mutation p.S1670G 0.48 benign(0.003) TCGA-W5-AA39-01 16 74525044 74525044 G T GLG1 Missense_Mutation p.S435Y 0.38 deleterious(0.01) probably_damaging(0.947) TCGA-W5-AA39-01 16 74670304 74670304 A C RFWD3 Missense_Mutation p.C456G 0.53 tolerated(0.07) benign(0.029) TCGA-W5-AA39-01 16 79629880 79629880 G A MAF Intron 0.25 TCGA-W5-AA39-01 16 79631499 79631499 A C MAF Intron 0.38 TCGA-W5-AA39-01 16 81157357 81157357 A T PKD1L2 RNA 0.48 TCGA-W5-AA39-01 16 81248669 81248669 A T PKD1L2 Silent p.R198R 0.42 TCGA-W5-AA39-01 16 83816933 83816933 T G CDH13 Missense_Mutation p.S711A 0.52 tolerated(0.06) probably_damaging(0.994) TCGA-W5-AA39-01 16 8740058 8740058 A C METTL22 3'UTR 0.31 TCGA-W5-AA39-01 16 88947561 88947561 A C CBFA2T3 Intron 0.32 TCGA-W5-AA39-01 16 8948836 8948836 T A CARHSP1 3'UTR 0.31 TCGA-W5-AA39-01 16 89987175 89987175 A C MC1R 3'UTR 0.61 TCGA-W5-AA39-01 16 9857878 9857878 C A GRIN2A Nonsense_Mutation p.E1175* 0.38 TCGA-W5-AA39-01 17 1478030 1478030 A G SLC43A2 3'UTR 0.56 TCGA-W5-AA39-01 17 1537990 1537990 A C SCARF1 3'UTR 0.28 TCGA-W5-AA39-01 17 1554047 1554047 G A PRPF8 3'UTR 0.30 TCGA-W5-AA39-01 17 15976773 15976773 T C NCOR1 Missense_Mutation p.R1261G 0.47 probably_damaging(0.989) TCGA-W5-AA39-01 17 1641374 1641374 T G WDR81 3'UTR 0.34 TCGA-W5-AA39-01 17 1641740 1641740 G C WDR81 3'UTR 0.31 TCGA-W5-AA39-01 17 16705681 16705681 G A CCDC144A 3'UTR 0.41 TCGA-W5-AA39-01 17 17050634 17050634 G T MPRIP Missense_Mutation p.W403L 0.48 deleterious(0) possibly_damaging(0.885) TCGA-W5-AA39-01 17 17722483 17722483 A G SREBF1 Silent p.P334P 0.25 TCGA-W5-AA39-01 17 18009784 18009784 A C DRG2 Missense_Mutation p.K331T 0.28 deleterious(0) probably_damaging(0.984) TCGA-W5-AA39-01 17 18156676 18156676 T A FLII Missense_Mutation p.N318Y 0.30 deleterious(0.01) benign(0.181) TCGA-W5-AA39-01 17 18702239 18702239 T A TVP23B Missense_Mutation p.F149I 0.55 deleterious(0.03) possibly_damaging(0.588) TCGA-W5-AA39-01 17 18880179 18880179 C A SLC5A10 Silent p.R287R 0.20 TCGA-W5-AA39-01 17 19091338 19091338 C T SNORD3A RNA 0.21 TCGA-W5-AA39-01 17 19091367 19091367 C T SNORD3A RNA 0.30 TCGA-W5-AA39-01 17 19093547 19093547 A C SNORD3C RNA 0.25 TCGA-W5-AA39-01 17 19606450 19606450 A C SLC47A2 Missense_Mutation p.I386R 0.36 deleterious(0.01) benign(0.009) TCGA-W5-AA39-01 17 26207239 26207239 A C LYRM9 Intron 0.25 TCGA-W5-AA39-01 17 26523284 26523284 A C NLK 3'UTR 0.39 TCGA-W5-AA39-01 17 26523342 26523342 T C NLK 3'UTR 0.32 TCGA-W5-AA39-01 17 27005649 27005649 A C SUPT6H Missense_Mutation p.E401D 0.37 deleterious(0.04) probably_damaging(0.954) TCGA-W5-AA39-01 17 27493528 27493528 C T MYO18A Missense_Mutation p.R144H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.535) TCGA-W5-AA39-01 17 29220580 29220580 T A ATAD5 Nonsense_Mutation p.L1570* 0.44 TCGA-W5-AA39-01 17 32966212 32966212 C T TMEM132E 3'UTR 0.34 TCGA-W5-AA39-01 17 36667244 36667244 C T ARHGAP23 3'UTR 0.24 TCGA-W5-AA39-01 17 37687154 37687154 C T CDK12 Missense_Mutation p.T1353I 0.41 benign(0.117) TCGA-W5-AA39-01 17 37883077 37883077 T G ERBB2 Missense_Mutation p.L994V 0.44 deleterious(0.03) benign(0.005) TCGA-W5-AA39-01 17 38191225 38191225 G C MED24 Intron 0.25 TCGA-W5-AA39-01 17 38574040 38574040 C T TOP2A Missense_Mutation p.E2K 0.40 deleterious_low_confidence(0.02) benign(0.02) TCGA-W5-AA39-01 17 38976869 38976869 C A KRT10 Missense_Mutation p.G254V 0.42 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 17 40049390 40049390 G A ACLY Silent p.A499A 0.56 TCGA-W5-AA39-01 17 40823409 40823409 G A PLEKHH3 Missense_Mutation p.A415V 0.39 deleterious(0.04) unknown(0) TCGA-W5-AA39-01 17 40831480 40831480 C A CCR10 3'UTR 0.40 TCGA-W5-AA39-01 17 40946837 40946838 - TC WNK4 Frame_Shift_Ins p.T802Pfs*134 0.34 TCGA-W5-AA39-01 17 4098471 4098471 G C ANKFY1 Missense_Mutation p.L434V 0.38 tolerated(0.35) benign(0.074) TCGA-W5-AA39-01 17 4113218 4113218 T G ANKFY1 Silent p.L203L 0.58 TCGA-W5-AA39-01 17 42395541 42395541 T G RUNDC3A Missense_Mutation p.F426V 0.36 deleterious_low_confidence(0.01) benign(0.08) TCGA-W5-AA39-01 17 43227994 43227994 A C HEXIM1 3'UTR 0.46 TCGA-W5-AA39-01 17 46005835 46005835 A C SP2 3'UTR 0.52 TCGA-W5-AA39-01 17 46632909 46632909 G A HOXB3 5'Flank 0.51 TCGA-W5-AA39-01 17 47299925 47299925 T C ABI3 Missense_Mutation p.Y317H 0.41 deleterious(0) possibly_damaging(0.727) TCGA-W5-AA39-01 17 48167438 48167438 T G ITGA3 3'Flank 0.58 TCGA-W5-AA39-01 17 48745811 48745811 G C ABCC3 Silent p.R601R 0.33 TCGA-W5-AA39-01 17 48753044 48753044 C A ABCC3 Silent p.R923R 0.58 TCGA-W5-AA39-01 17 5341560 5341560 T G C1QBP Missense_Mutation p.E89A 0.36 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 17 56082914 56082914 T G SRSF1 Silent p.P200P 0.31 TCGA-W5-AA39-01 17 57643997 57643997 G A DHX40 Missense_Mutation p.G41E 0.30 tolerated(0.39) benign(0.008) TCGA-W5-AA39-01 17 58029971 58030002 AAAATATTCTTTATTCTGAAAACAATGTCAGG - RNFT1 3'UTR 0.43 TCGA-W5-AA39-01 17 59952332 59952332 G T INTS2 Missense_Mutation p.Q850K 0.38 tolerated(0.14) possibly_damaging(0.626) TCGA-W5-AA39-01 17 60022125 60022125 A T MED13 3'UTR 0.42 TCGA-W5-AA39-01 17 60022384 60022384 T G MED13 3'UTR 0.47 TCGA-W5-AA39-01 17 60022460 60022460 A C MED13 3'UTR 0.32 TCGA-W5-AA39-01 17 61660866 61660866 T C DCAF7 Intron 0.42 TCGA-W5-AA39-01 17 62142632 62142632 A G ERN1 Silent p.V286V 0.35 TCGA-W5-AA39-01 17 62272276 62272283 GATTTTCT - TEX2 Frame_Shift_Del p.Q606Lfs*2 0.40 TCGA-W5-AA39-01 17 62971482 62971482 C T AMZ2P1 RNA 0.41 TCGA-W5-AA39-01 17 6351018 6351018 C T FAM64A Missense_Mutation p.S177L 0.50 tolerated(0.16) benign(0.022) TCGA-W5-AA39-01 17 63526145 63526145 C A AXIN2 Silent p.V827V 0.24 TCGA-W5-AA39-01 17 64784954 64784954 T C PRKCA Intron 0.33 TCGA-W5-AA39-01 17 65072205 65072205 T C HELZ 3'UTR 0.35 TCGA-W5-AA39-01 17 67014691 67014710 GGGATAAAGCTAATACCAAA CAAC ABCA9 Frame_Shift_Del p.F871Vfs*38 0.29 TCGA-W5-AA39-01 17 70121360 70121360 G T SOX9 3'UTR 0.52 TCGA-W5-AA39-01 17 7124970 7124983 GAAAGAAAAATACC - ACADVL Frame_Shift_Del p.Q220Hfs*51 0.68 TCGA-W5-AA39-01 17 7156115 7156124 CTCTTGAAGG - ELP5 Frame_Shift_Del p.L41Rfs*20 0.38 TCGA-W5-AA39-01 17 7297797 7297797 T C TMEM256-PLSCR3 5'UTR 0.46 TCGA-W5-AA39-01 17 72997553 72997553 G C CDR2L Missense_Mutation p.E104Q 0.52 deleterious(0.01) possibly_damaging(0.759) TCGA-W5-AA39-01 17 73738739 73738739 G C ITGB4 Missense_Mutation p.E953D 0.50 tolerated(0.29) benign(0.032) TCGA-W5-AA39-01 17 73751914 73751914 A G ITGB4 Missense_Mutation p.Y1564C 0.41 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 17 73773925 73773926 AA - H3F3B 3'UTR 0.46 TCGA-W5-AA39-01 17 73847681 73847681 T A WBP2 Nonsense_Mutation p.K46* 0.38 TCGA-W5-AA39-01 17 74936851 74936851 G T MGAT5B Missense_Mutation p.G599V 0.20 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 17 74936852 74936852 C T MGAT5B Silent p.G599G 0.19 TCGA-W5-AA39-01 17 7533491 7533491 A C SHBG Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.09) TCGA-W5-AA39-01 17 76193315 76193315 T C AFMID Intron 0.27 TCGA-W5-AA39-01 17 7840511 7840511 T G CNTROB Silent p.S286S 0.51 TCGA-W5-AA39-01 17 79514062 79514062 A C C17orf70 Silent p.T682T 0.33 TCGA-W5-AA39-01 17 79563165 79563165 T G NPLOC4 Missense_Mutation p.K366T 0.42 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 17 7976095 7976095 A G ALOX12B Silent p.S700S 0.47 TCGA-W5-AA39-01 17 7983422 7983422 A G AC129492.6 Missense_Mutation p.K35E 0.38 benign(0.002) TCGA-W5-AA39-01 17 8051527 8051527 T G PER1 Missense_Mutation p.S367R 0.50 deleterious(0) possibly_damaging(0.754) TCGA-W5-AA39-01 17 8051559 8051559 T C PER1 Missense_Mutation p.D356G 0.36 deleterious(0) possibly_damaging(0.881) TCGA-W5-AA39-01 17 8062852 8062860 TCCAGCAAG - VAMP2 3'UTR 0.31 TCGA-W5-AA39-01 17 8076742 8076742 T A TMEM107 3'Flank 0.62 TCGA-W5-AA39-01 17 8140773 8140773 T A CTC1 Nonsense_Mutation p.K238* 0.43 TCGA-W5-AA39-01 17 8354204 8354204 A C NDEL1 Missense_Mutation p.Q211H 0.50 deleterious(0.03) probably_damaging(0.934) TCGA-W5-AA39-01 18 19749515 19749515 T C GATA6 5'UTR 0.40 TCGA-W5-AA39-01 18 21694602 21694602 T A TTC39C Missense_Mutation p.Y357N 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-W5-AA39-01 18 25565702 25565702 C T CDH2 Missense_Mutation p.G589R 0.31 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 18 29172884 29172884 T G TTR Missense_Mutation p.L32R 0.36 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 18 3067439 3067439 T A MYOM1 Missense_Mutation p.R1627W 0.40 deleterious(0) possibly_damaging(0.882) TCGA-W5-AA39-01 18 3067471 3067471 T A MYOM1 Missense_Mutation p.D1616V 0.42 deleterious(0) probably_damaging(0.957) TCGA-W5-AA39-01 18 3067473 3067473 T A MYOM1 Silent p.S1615S 0.44 TCGA-W5-AA39-01 18 3094261 3094261 T G MYOM1 Missense_Mutation p.K1257N 0.40 deleterious(0) possibly_damaging(0.671) TCGA-W5-AA39-01 18 31158612 31158612 A G ASXL3 Missense_Mutation p.K6R 0.37 benign(0.007) TCGA-W5-AA39-01 18 42644072 42644072 G A SETBP1 3'UTR 0.42 TCGA-W5-AA39-01 18 46385774 46385774 G C CTIF Silent p.L549L 0.43 TCGA-W5-AA39-01 18 48703410 48703410 C T MEX3C Missense_Mutation p.V431I 0.50 tolerated(0.29) benign(0.244) TCGA-W5-AA39-01 18 52556641 52556641 C A RAB27B Nonsense_Mutation p.C218* 0.29 TCGA-W5-AA39-01 18 54694772 54694772 T C WDR7 3'UTR 0.38 TCGA-W5-AA39-01 18 55336582 55336582 T A ATP8B1 Nonsense_Mutation p.K689* 0.43 TCGA-W5-AA39-01 18 67872959 67872959 T G RTTN 5'UTR 0.40 TCGA-W5-AA39-01 18 72020689 72020689 A T C18orf63 Missense_Mutation p.K396M 0.55 deleterious(0.01) probably_damaging(0.946) TCGA-W5-AA39-01 18 76903819 76903819 A T ATP9B Missense_Mutation p.S229C 0.43 deleterious(0.01) possibly_damaging(0.748) TCGA-W5-AA39-01 18 77906016 77906016 A T AC139100.2 5'UTR 0.33 TCGA-W5-AA39-01 18 9559465 9559465 A C PPP4R1 Missense_Mutation p.N660K 0.50 deleterious(0) probably_damaging(0.987) TCGA-W5-AA39-01 18 9956766 9956766 T G VAPA 3'Flank 0.38 TCGA-W5-AA39-01 19 10225708 10225708 T G P2RY11 3'UTR 0.34 TCGA-W5-AA39-01 19 10463198 10463198 T G TYK2 Missense_Mutation p.K1077T 0.38 deleterious(0) probably_damaging(0.965) TCGA-W5-AA39-01 19 10610721 10610721 A G KEAP1 5'UTR 0.19 TCGA-W5-AA39-01 19 11944168 11944168 A G ZNF440 3'UTR 0.46 TCGA-W5-AA39-01 19 12014751 12014751 T C ZNF69 Silent p.Y60Y 0.37 TCGA-W5-AA39-01 19 12298276 12298276 A C ZNF136 Missense_Mutation p.E361D 0.41 tolerated(0.07) possibly_damaging(0.469) TCGA-W5-AA39-01 19 12975632 12975632 G A MAST1 Missense_Mutation p.C459Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-W5-AA39-01 19 1428934 1428956 GCTGCCAATGGCTGGGCAGGCCA - DAZAP1 Frame_Shift_Del p.A215Pfs*204 0.62 TCGA-W5-AA39-01 19 1490288 1490288 G A PCSK4 Missense_Mutation p.R20C 0.42 tolerated(0.21) benign(0.026) TCGA-W5-AA39-01 19 15651396 15651396 C T CYP4F22 Silent p.D269D 0.36 TCGA-W5-AA39-01 19 1811727 1811727 A T ATP8B3 Silent p.T3T 0.69 TCGA-W5-AA39-01 19 18648519 18648519 C T FKBP8 Silent p.L279L 0.42 TCGA-W5-AA39-01 19 19104294 19104294 G T SUGP2 3'UTR 0.55 TCGA-W5-AA39-01 19 19162649 19162649 T C ARMC6 Silent p.T166T 0.50 TCGA-W5-AA39-01 19 19638823 19638823 A GG NDUFA13 Frame_Shift_Ins p.E108Gfs*? 0.29 TCGA-W5-AA39-01 19 21241349 21241349 A G ZNF430 3'UTR 0.33 TCGA-W5-AA39-01 19 23544197 23544197 T C ZNF91 Silent p.R528R 0.50 TCGA-W5-AA39-01 19 23544752 23544752 A C ZNF91 Missense_Mutation p.I343M 0.41 deleterious(0.03) possibly_damaging(0.639) TCGA-W5-AA39-01 19 2514920 2514920 T G GNG7 3'UTR 0.60 TCGA-W5-AA39-01 19 33469588 33469588 A C RHPN2 3'UTR 0.45 TCGA-W5-AA39-01 19 34855782 34855782 A C GPI 5'UTR 0.24 TCGA-W5-AA39-01 19 35775743 35775743 A G HAMP Missense_Mutation p.S48G 0.35 tolerated(1) benign(0) TCGA-W5-AA39-01 19 3589910 3589910 G T GIPC3 Missense_Mutation p.A263S 0.47 tolerated(0.07) possibly_damaging(0.505) TCGA-W5-AA39-01 19 36233457 36233457 T G U2AF1L4 3'UTR 0.39 TCGA-W5-AA39-01 19 37038201 37038201 T G ZNF529 Missense_Mutation p.K420T 0.42 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 19 37241073 37241073 A C ZNF850 Missense_Mutation p.F290C 0.36 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 19 37368144 37368144 A C ZNF345 Silent p.R138R 0.34 TCGA-W5-AA39-01 19 37368149 37368149 T G ZNF345 Missense_Mutation p.I139M 0.32 deleterious(0.02) probably_damaging(0.969) TCGA-W5-AA39-01 19 37904939 37904939 A G ZNF569 Silent p.I207I 0.41 TCGA-W5-AA39-01 19 38689097 38689097 G T SIPA1L3 Missense_Mutation p.G1637W 0.58 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 19 39823732 39823732 G A GMFG Missense_Mutation p.P62L 0.43 deleterious(0) possibly_damaging(0.602) TCGA-W5-AA39-01 19 39875032 39875032 A C SAMD4B 3'UTR 0.43 TCGA-W5-AA39-01 19 41248653 41248653 A T C19orf54 Silent p.A247A 0.57 TCGA-W5-AA39-01 19 41633960 41633960 T A CYP2F1 Silent p.P483P 0.47 TCGA-W5-AA39-01 19 42525501 42525501 G A GRIK5 Missense_Mutation p.S608L 0.47 deleterious(0) possibly_damaging(0.815) TCGA-W5-AA39-01 19 4327373 4327373 C T STAP2 Silent p.V200V 0.60 TCGA-W5-AA39-01 19 43690496 43690496 G A PSG5 Missense_Mutation p.T21I 0.37 deleterious(0.04) probably_damaging(0.994) TCGA-W5-AA39-01 19 44039857 44039857 T A ZNF575 3'UTR 0.43 TCGA-W5-AA39-01 19 4442934 4442934 C T CHAF1A Missense_Mutation p.P928L 0.28 tolerated_low_confidence(0.09) benign(0.074) TCGA-W5-AA39-01 19 45254588 45254588 C T BCL3 Missense_Mutation p.L121F 0.68 deleterious(0) probably_damaging(0.94) TCGA-W5-AA39-01 19 45855787 45855787 C A ERCC2 Missense_Mutation p.G675C 0.47 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 19 45988721 45988721 A G RTN2 3'UTR 0.38 TCGA-W5-AA39-01 19 46891939 46891939 G A PPP5C Missense_Mutation p.V436M 0.36 deleterious(0.02) benign(0.197) TCGA-W5-AA39-01 19 47712448 47712450 CTT - SAE1 In_Frame_Del p.F331del 0.44 TCGA-W5-AA39-01 19 49132945 49132945 A C SPHK2 Missense_Mutation p.E627A 0.36 tolerated(0.16) benign(0.046) TCGA-W5-AA39-01 19 49132949 49132949 T A SPHK2 Nonsense_Mutation p.Y628* 0.36 TCGA-W5-AA39-01 19 49339067 49339067 T G HSD17B14 Missense_Mutation p.K41T 0.35 tolerated(0.26) benign(0.049) TCGA-W5-AA39-01 19 50310035 50310035 G T AP2A1 3'UTR 0.43 TCGA-W5-AA39-01 19 50314691 50314691 C A FUZ Missense_Mutation p.D141Y 0.48 deleterious(0.01) possibly_damaging(0.447) TCGA-W5-AA39-01 19 50436094 50436094 C T ATF5 Silent p.A198A 0.71 TCGA-W5-AA39-01 19 53393541 53393541 G C ZNF320 5'UTR 0.48 TCGA-W5-AA39-01 19 53885337 53885337 A G ZNF525 3'UTR 0.27 TCGA-W5-AA39-01 19 54666823 54666823 C G TMC4 Silent p.G455G 0.24 TCGA-W5-AA39-01 19 54672203 54672203 T A TMC4 Missense_Mutation p.T222S 0.33 tolerated(0.63) benign(0.014) TCGA-W5-AA39-01 19 55054772 55054772 G A KIR3DX1 3'UTR 0.48 TCGA-W5-AA39-01 19 56888579 56888579 T G AC006116.24 RNA 0.54 TCGA-W5-AA39-01 19 56935139 56935139 A G ZNF583 Missense_Mutation p.Q371R 0.32 tolerated(0.09) probably_damaging(0.99) TCGA-W5-AA39-01 19 58132575 58132575 A T ZNF134 Missense_Mutation p.Q363L 0.47 deleterious(0.05) probably_damaging(0.991) TCGA-W5-AA39-01 19 58491019 58491019 G T ZNF606 Missense_Mutation p.N343K 0.35 tolerated(1) benign(0.185) TCGA-W5-AA39-01 19 58860343 58860343 A C A1BG Intron 0.36 TCGA-W5-AA39-01 19 59009967 59009967 A T SLC27A5 Missense_Mutation p.F663Y 0.38 tolerated(1) benign(0.022) TCGA-W5-AA39-01 19 6697563 6697563 C G C3 Missense_Mutation p.R863T 0.37 deleterious(0) probably_damaging(0.915) TCGA-W5-AA39-01 19 7591678 7591678 G C MCOLN1 Missense_Mutation p.R146P 0.48 tolerated(0.4) possibly_damaging(0.738) TCGA-W5-AA39-01 19 8056616 8056616 A T ELAVL1 Silent p.P28P 0.39 TCGA-W5-AA39-01 19 8467132 8467132 T C RAB11B Silent p.A133A 0.27 TCGA-W5-AA39-01 19 8486775 8486775 C T MARCH2 Silent p.S17S 0.45 TCGA-W5-AA39-01 19 8527458 8527458 A C HNRNPM Missense_Mutation p.K110T 0.31 deleterious(0) benign(0.114) TCGA-W5-AA39-01 19 9407095 9407095 G A ZNF699 Missense_Mutation p.H329Y 0.48 deleterious(0) probably_damaging(0.995) TCGA-W5-AA39-01 19 9491917 9491917 A C ZNF177 Silent p.R304R 0.43 TCGA-W5-AA39-01 1 100983832 100983832 A G CDC14A Missense_Mutation p.Y594C 0.70 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-W5-AA39-01 1 10327609 10327609 A G KIF1B Missense_Mutation p.K201E 0.61 deleterious(0) probably_damaging(0.95) TCGA-W5-AA39-01 1 10327615 10327615 A T KIF1B Missense_Mutation p.R203W 0.58 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 1 112255447 112255447 A G RAP1A 3'UTR 1.00 TCGA-W5-AA39-01 1 113140706 113140706 T C ST7L Missense_Mutation p.Y170C 0.71 deleterious(0) probably_damaging(0.964) TCGA-W5-AA39-01 1 11733376 11733376 A C FBXO6 Missense_Mutation p.K184N 0.62 tolerated(0.64) benign(0.281) TCGA-W5-AA39-01 1 120302536 120302536 T A HMGCS2 Silent p.G212G 0.46 TCGA-W5-AA39-01 1 120436670 120436670 C A ADAM30 Missense_Mutation p.A764S 0.54 tolerated_low_confidence(0.61) benign(0.013) TCGA-W5-AA39-01 1 120455397 120455397 A C NOTCH2 3'UTR 0.26 TCGA-W5-AA39-01 1 120934442 120934442 T - FCGR1B Frame_Shift_Del p.E82Dfs*41 0.17 TCGA-W5-AA39-01 1 1389795 1389795 A T ATAD3C Missense_Mutation p.Y98F 0.14 tolerated(0.58) benign(0.019) TCGA-W5-AA39-01 1 144892198 144892198 A G PDE4DIP Intron 0.16 TCGA-W5-AA39-01 1 144922029 144922029 G C PDE4DIP Missense_Mutation p.P334A 0.16 deleterious(0.01) benign(0.007) TCGA-W5-AA39-01 1 145075892 145075892 T C PDE4DIP 5'UTR 0.19 TCGA-W5-AA39-01 1 145299899 145299899 T G NBPF10 Silent p.T316T 0.28 TCGA-W5-AA39-01 1 145498117 145498117 T G LIX1L Silent p.V236V 0.14 TCGA-W5-AA39-01 1 146639504 146639504 C G PRKAB2 Silent p.G55G 0.53 TCGA-W5-AA39-01 1 150266678 150266678 A G MRPS21 5'UTR 0.15 TCGA-W5-AA39-01 1 150670992 150670992 G A HORMAD1 3'UTR 0.74 TCGA-W5-AA39-01 1 151687099 151687099 C T CELF3 Missense_Mutation p.A67T 0.77 deleterious(0.01) possibly_damaging(0.613) TCGA-W5-AA39-01 1 153600658 153600658 A G S100A13 Intron 0.22 TCGA-W5-AA39-01 1 155447890 155447890 A C ASH1L Missense_Mutation p.F1591V 0.18 tolerated_low_confidence(0.08) possibly_damaging(0.809) TCGA-W5-AA39-01 1 155880452 155880452 T A RIT1 Missense_Mutation p.K51M 0.62 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 1 155916930 155916930 T C ARHGEF2 3'UTR 0.24 TCGA-W5-AA39-01 1 156450644 156450644 C T MEF2D Silent p.G126G 0.62 TCGA-W5-AA39-01 1 156622046 156622046 A G BCAN Missense_Mutation p.E435G 0.25 tolerated(0.42) benign(0.01) TCGA-W5-AA39-01 1 15855658 15855658 C T DNAJC16 Silent p.L20L 0.43 TCGA-W5-AA39-01 1 160263008 160263008 G T COPA Missense_Mutation p.S933Y 0.65 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 1 160648734 160648734 A G CD48 3'UTR 0.20 TCGA-W5-AA39-01 1 161183750 161183750 A C NDUFS2 Intron 0.69 TCGA-W5-AA39-01 1 162467956 162467956 T G UHMK1 Missense_Mutation p.F56V 0.67 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 1 16266426 16266426 G A SPEN 3'UTR 0.39 TCGA-W5-AA39-01 1 165728808 165728808 C T TMCO1 Silent p.K105K 0.63 TCGA-W5-AA39-01 1 168550469 168550469 C T XCL1 3'UTR 0.71 TCGA-W5-AA39-01 1 169890602 169890602 A C KIFAP3 3'UTR 0.28 TCGA-W5-AA39-01 1 172558420 172558420 C G SUCO Missense_Mutation p.Q727E 0.63 tolerated(0.29) benign(0.103) TCGA-W5-AA39-01 1 176811561 176811561 C G PAPPA2 Missense_Mutation p.R1783G 0.25 deleterious(0) possibly_damaging(0.858) TCGA-W5-AA39-01 1 178745908 178745908 A C RALGPS2 Silent p.L3L 0.65 TCGA-W5-AA39-01 1 179012890 179012890 G A FAM20B 5'UTR 0.72 TCGA-W5-AA39-01 1 179312001 179312001 T C SOAT1 Silent p.T288T 0.73 TCGA-W5-AA39-01 1 186277684 186277684 A G PRG4 Missense_Mutation p.T945A 0.57 unknown(0) TCGA-W5-AA39-01 1 19166611 19166611 C T TAS1R2 Missense_Mutation p.A668T 0.47 deleterious(0.03) possibly_damaging(0.775) TCGA-W5-AA39-01 1 19584345 19584345 A G MRTO4 Silent p.T120T 0.21 TCGA-W5-AA39-01 1 19597309 19597309 A G AKR7L 5'UTR 0.36 TCGA-W5-AA39-01 1 196973902 196973902 T C CFHR5 Missense_Mutation p.F481S 0.17 tolerated(0.54) probably_damaging(0.999) TCGA-W5-AA39-01 1 197127603 197127603 C G ZBTB41 3'UTR 0.57 TCGA-W5-AA39-01 1 200376559 200376559 A C ZNF281 Missense_Mutation p.L759V 0.24 tolerated(0.18) probably_damaging(0.991) TCGA-W5-AA39-01 1 200587439 200587439 A C KIF14 Missense_Mutation p.I138R 0.64 tolerated(0.57) benign(0) TCGA-W5-AA39-01 1 202107156 202107156 A G ARL8A Missense_Mutation p.I72T 0.69 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 1 204236606 204236606 T C PLEKHA6 Missense_Mutation p.K93E 0.57 deleterious(0) probably_damaging(0.978) TCGA-W5-AA39-01 1 204501912 204501912 T A MDM4 Intron 0.62 TCGA-W5-AA39-01 1 205027329 205027329 A T CNTN2 Missense_Mutation p.E79V 0.65 deleterious(0.02) benign(0.005) TCGA-W5-AA39-01 1 205271313 205271313 A G NUAK2 3'UTR 0.68 TCGA-W5-AA39-01 1 20656759 20656759 C T VWA5B1 Silent p.V447V 0.40 TCGA-W5-AA39-01 1 206907172 206907172 A G MAPKAPK2 3'UTR 0.13 TCGA-W5-AA39-01 1 208200667 208200667 T A PLXNA2 Missense_Mutation p.E1869V 0.62 deleterious(0) probably_damaging(0.95) TCGA-W5-AA39-01 1 209801446 209801446 C G LAMB3 Missense_Mutation p.E408Q 0.76 tolerated(0.15) benign(0.082) TCGA-W5-AA39-01 1 209969704 209969704 A C IRF6 Missense_Mutation p.I123S 0.22 tolerated(0.5) benign(0.002) TCGA-W5-AA39-01 1 209974658 209974658 T G IRF6 Missense_Mutation p.K34T 0.15 tolerated(0.05) benign(0.159) TCGA-W5-AA39-01 1 211921113 211921113 T - LPGAT1 3'UTR 0.41 TCGA-W5-AA39-01 1 212118230 212118230 C T INTS7 Missense_Mutation p.G833R 0.58 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 1 214169845 214169845 G C PROX1 5'UTR 0.26 TCGA-W5-AA39-01 1 214503534 214503534 C A SMYD2 Silent p.L243L 0.21 TCGA-W5-AA39-01 1 217783668 217783668 A C GPATCH2 Missense_Mutation p.S365A 0.23 tolerated(0.29) benign(0.001) TCGA-W5-AA39-01 1 220141998 220141998 T C EPRS 3'UTR 0.83 TCGA-W5-AA39-01 1 221507263 221507263 G A RP11-421L10.1 RNA 0.32 TCGA-W5-AA39-01 1 224345385 224345385 A G FBXO28 Silent p.R348R 0.70 TCGA-W5-AA39-01 1 224477340 224477340 A G NVL Missense_Mutation p.L474P 0.26 deleterious(0) probably_damaging(0.996) TCGA-W5-AA39-01 1 226033110 226033110 G T EPHX1 3'UTR 0.21 TCGA-W5-AA39-01 1 228194881 228194881 G C WNT3A Missense_Mutation p.G18R 0.60 tolerated(0.41) benign(0.019) TCGA-W5-AA39-01 1 22925328 22925328 C A EPHA8 Intron 0.33 TCGA-W5-AA39-01 1 236175334 236175334 T A NID1 Missense_Mutation p.E805V 0.55 deleterious(0.02) probably_damaging(0.997) TCGA-W5-AA39-01 1 236175345 236175345 T C NID1 Splice_Site p.X802_splice 0.50 TCGA-W5-AA39-01 1 243663078 243663078 T A SDCCAG8 Silent p.S711S 0.43 TCGA-W5-AA39-01 1 245019773 245019773 A T HNRNPU Missense_Mutation p.V633D 0.46 deleterious(0) unknown(0) TCGA-W5-AA39-01 1 24718155 24718155 A C STPG1 Missense_Mutation p.Y29D 0.36 deleterious(0.04) possibly_damaging(0.467) TCGA-W5-AA39-01 1 247612303 247612319 TTTTCTAATAAGAAAAA - NLRP3 3'Flank 0.43 TCGA-W5-AA39-01 1 249211007 249211007 T C PGBD2 Missense_Mutation p.L75P 0.57 deleterious(0) probably_damaging(0.99) TCGA-W5-AA39-01 1 26448622 26448622 A C PDIK1L Missense_Mutation p.S194R 0.62 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 1 27240452 27240452 T G NR0B2 5'UTR 0.39 TCGA-W5-AA39-01 1 27425393 27425393 T C SLC9A1 3'UTR 0.55 TCGA-W5-AA39-01 1 27722081 27722081 T C GPR3 3'UTR 0.45 TCGA-W5-AA39-01 1 27722082 27722082 T G GPR3 3'UTR 0.46 TCGA-W5-AA39-01 1 27992788 27992788 G A IFI6 3'UTR 0.61 TCGA-W5-AA39-01 1 28843339 28843339 A C RCC1 5'Flank 0.38 TCGA-W5-AA39-01 1 2985791 2985791 A C PRDM16 5'UTR 0.43 TCGA-W5-AA39-01 1 31437697 31437697 A C PUM1 Missense_Mutation p.L716R 0.46 deleterious_low_confidence(0.01) benign(0.397) TCGA-W5-AA39-01 1 31437700 31437700 T C PUM1 Missense_Mutation p.D715G 0.50 tolerated(0.11) possibly_damaging(0.876) TCGA-W5-AA39-01 1 32560448 32560448 T G TMEM39B Missense_Mutation p.S331A 0.33 tolerated(0.26) benign(0.334) TCGA-W5-AA39-01 1 33146165 33146165 T G SYNC 3'UTR 0.27 TCGA-W5-AA39-01 1 33409664 33409664 T G RNF19B Missense_Mutation p.K454T 0.48 tolerated(0.05) possibly_damaging(0.815) TCGA-W5-AA39-01 1 36020083 36020083 T C KIAA0319L Missense_Mutation p.R4G 0.44 deleterious_low_confidence(0) benign(0.036) TCGA-W5-AA39-01 1 36506015 36506015 A C AGO3 Silent p.R715R 0.38 TCGA-W5-AA39-01 1 36565701 36565701 T C COL8A2 Missense_Mutation p.Q48R 0.30 tolerated_low_confidence(0.38) unknown(0) TCGA-W5-AA39-01 1 36759442 36759456 TCAATTTTAGGAGAA CC THRAP3 Splice_Site p.X677_splice 0.32 TCGA-W5-AA39-01 1 3807598 3807598 T G C1orf174 Silent p.T51T 0.39 TCGA-W5-AA39-01 1 38444662 38444662 G C SF3A3 Silent p.G275G 0.45 TCGA-W5-AA39-01 1 39799172 39799172 A C MACF1 Intron 0.34 TCGA-W5-AA39-01 1 39879568 39879568 A T KIAA0754 Missense_Mutation p.T1075S 0.22 unknown(0) TCGA-W5-AA39-01 1 39879575 39879575 A T KIAA0754 Missense_Mutation p.E1077V 0.21 unknown(0) TCGA-W5-AA39-01 1 39881776 39881776 C T KIAA0754 3'UTR 0.43 TCGA-W5-AA39-01 1 43748408 43748408 T G C1orf210 3'UTR 0.55 TCGA-W5-AA39-01 1 44423802 44423803 - TGC IPO13 In_Frame_Ins p.A567dup 0.41 TCGA-W5-AA39-01 1 45478646 45478646 T G UROD Missense_Mutation p.Y30D 0.40 deleterious(0) probably_damaging(0.94) TCGA-W5-AA39-01 1 45984678 45984687 GGGGCAGGGT - PRDX1 Frame_Shift_Del p.H10Pfs*61 0.24 TCGA-W5-AA39-01 1 46093590 46093590 A G GPBP1L1 3'UTR 0.58 TCGA-W5-AA39-01 1 51754561 51754561 A G TTC39A Silent p.L524L 0.47 TCGA-W5-AA39-01 1 52082693 52082707 GCCCCGCCCCCTGCG - OSBPL9 5'Flank 0.28 TCGA-W5-AA39-01 1 52732339 52732339 A G ZFYVE9 Missense_Mutation p.E764G 0.31 deleterious(0.02) probably_damaging(0.972) TCGA-W5-AA39-01 1 52732359 52732359 A C ZFYVE9 Missense_Mutation p.S771R 0.32 tolerated(0.2) probably_damaging(0.96) TCGA-W5-AA39-01 1 52830296 52830296 A G CC2D1B 5'UTR 0.31 TCGA-W5-AA39-01 1 60330334 60330334 C T HOOK1 Missense_Mutation p.H553Y 0.38 deleterious(0.05) probably_damaging(0.928) TCGA-W5-AA39-01 1 6101927 6101927 T G KCNAB2 5'Flank 0.69 TCGA-W5-AA39-01 1 62146854 62146854 T - TM2D1 3'UTR 0.35 TCGA-W5-AA39-01 1 6511978 6511978 T G ESPN Missense_Mutation p.L716R 0.77 tolerated(0.06) probably_damaging(0.938) TCGA-W5-AA39-01 1 70779446 70779446 A T ANKRD13C Missense_Mutation p.W231R 0.44 deleterious(0) probably_damaging(0.996) TCGA-W5-AA39-01 1 85666679 85666679 T C SYDE2 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.142) TCGA-W5-AA39-01 1 86591498 86591498 C G COL24A1 Missense_Mutation p.S174T 1.00 tolerated(1) benign(0) TCGA-W5-AA39-01 1 89889824 89889824 T C GBP1P1 RNA 0.44 TCGA-W5-AA39-01 1 90049514 90049514 T C LRRC8B Silent p.N435N 0.85 TCGA-W5-AA39-01 1 92573559 92573559 G T BTBD8 Splice_Site p.X221_splice 0.69 TCGA-W5-AA39-01 20 16025251 16025251 C A MACROD2 Intron 0.33 TCGA-W5-AA39-01 20 17475396 17475396 A C BFSP1 Missense_Mutation p.F441V 0.56 deleterious(0) possibly_damaging(0.874) TCGA-W5-AA39-01 20 17928287 17928287 A C SNX5 Missense_Mutation p.D307E 0.47 deleterious(0.05) possibly_damaging(0.574) TCGA-W5-AA39-01 20 22563329 22563329 T G FOXA2 Missense_Mutation p.K184T 0.38 deleterious(0) probably_damaging(0.99) TCGA-W5-AA39-01 20 23345474 23345474 A G GZF1 Missense_Mutation p.S152G 0.29 tolerated(0.26) benign(0.001) TCGA-W5-AA39-01 20 24954309 24954309 G A APMAP Silent p.T131T 0.33 TCGA-W5-AA39-01 20 30486300 30486300 C G TTLL9 Missense_Mutation p.F46L 0.50 deleterious(0) possibly_damaging(0.76) TCGA-W5-AA39-01 20 32295759 32295759 A G PXMP4 Missense_Mutation p.L131S 0.45 deleterious(0.01) possibly_damaging(0.71) TCGA-W5-AA39-01 20 33301219 33301219 A C TP53INP2 3'UTR 0.37 TCGA-W5-AA39-01 20 33567219 33567219 G C MYH7B Missense_Mutation p.E82Q 0.42 possibly_damaging(0.72) TCGA-W5-AA39-01 20 33722567 33722567 A G EDEM2 Missense_Mutation p.W226R 0.44 deleterious(0) probably_damaging(0.992) TCGA-W5-AA39-01 20 33722569 33722569 A G EDEM2 Missense_Mutation p.L225P 0.42 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 20 34205495 34205495 G T SPAG4 Missense_Mutation p.V155F 0.43 tolerated(0.55) benign(0.27) TCGA-W5-AA39-01 20 34236997 34237013 GCCATTTTGTTGTGTTT - RBM12 3'UTR 0.57 TCGA-W5-AA39-01 20 34287659 34287659 G A ROMO1 Silent p.A35A 0.41 TCGA-W5-AA39-01 20 34568459 34568459 T A CNBD2 Missense_Mutation p.C108S 0.49 tolerated(0.12) benign(0.037) TCGA-W5-AA39-01 20 36031978 36031978 G A SRC 3'UTR 0.50 TCGA-W5-AA39-01 20 3654549 3654549 T C ADAM33 Missense_Mutation p.T250A 0.67 tolerated(0.55) possibly_damaging(0.529) TCGA-W5-AA39-01 20 36694651 36694651 A C RPRD1B Missense_Mutation p.K275T 0.31 tolerated(0.1) benign(0.049) TCGA-W5-AA39-01 20 37117260 37117260 A C RALGAPB Missense_Mutation p.E62A 0.25 deleterious(0) benign(0.204) TCGA-W5-AA39-01 20 3730721 3730721 C A HSPA12B Missense_Mutation p.A383D 0.29 deleterious(0.01) benign(0.09) TCGA-W5-AA39-01 20 377743 377743 A C TRIB3 3'UTR 0.64 TCGA-W5-AA39-01 20 43996521 43996521 G A SYS1 3'UTR 0.64 TCGA-W5-AA39-01 20 44506452 44506452 T G ZSWIM3 Missense_Mutation p.F419V 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-W5-AA39-01 20 44643002 44643008 GCCCGCA - MMP9 Splice_Site p.X634_splice 0.35 TCGA-W5-AA39-01 20 44686706 44686706 T A SLC12A5 3'Flank 0.33 TCGA-W5-AA39-01 20 45817463 45817463 C T EYA2 3'UTR 0.34 TCGA-W5-AA39-01 20 46287020 46287020 C A SULF2 3'UTR 0.41 TCGA-W5-AA39-01 20 47863197 47863197 A T ZNFX1 3'UTR 0.41 TCGA-W5-AA39-01 20 4839936 4839936 T G SLC23A2 Silent p.P573P 0.39 TCGA-W5-AA39-01 20 57611616 57611616 T C SLMO2 Silent p.T125T 0.51 TCGA-W5-AA39-01 20 58470491 58470491 C T SYCP2 Splice_Site p.X555_splice 0.38 TCGA-W5-AA39-01 20 60709425 60709425 G T LSM14B 3'UTR 0.48 TCGA-W5-AA39-01 20 61926534 61926534 A C COL20A1 Missense_Mutation p.Q25H 0.32 tolerated(0.17) possibly_damaging(0.781) TCGA-W5-AA39-01 20 62737466 62737466 C T NPBWR2 Missense_Mutation p.R240Q 0.57 tolerated(0.15) benign(0.024) TCGA-W5-AA39-01 21 18966436 18966436 T G BTG3 Missense_Mutation p.N289T 0.62 deleterious(0.03) benign(0.122) TCGA-W5-AA39-01 21 34822063 34822063 T G TMEM50B 3'UTR 0.89 TCGA-W5-AA39-01 21 40665822 40665822 T C BRWD1 Missense_Mutation p.D249G 0.88 deleterious(0) probably_damaging(0.995) TCGA-W5-AA39-01 21 43412457 43412457 C G ZBTB21 Missense_Mutation p.R583T 0.89 tolerated(0.31) probably_damaging(1) TCGA-W5-AA39-01 21 44845977 44845977 C G SIK1 Missense_Mutation p.D28H 0.71 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 21 45746699 45746699 T G PFKL Missense_Mutation p.L766R 0.72 deleterious(0) possibly_damaging(0.736) TCGA-W5-AA39-01 22 18379580 18379580 A C MICAL3 Silent p.T372T 0.50 TCGA-W5-AA39-01 22 19344493 19344493 G A HIRA Silent p.L772L 0.64 TCGA-W5-AA39-01 22 19373053 19373053 A G HIRA Silent p.D440D 0.50 TCGA-W5-AA39-01 22 20458094 20458094 C G RIMBP3 Missense_Mutation p.G1070R 0.17 deleterious(0) benign(0.205) TCGA-W5-AA39-01 22 20760929 20760929 G A ZNF74 Missense_Mutation p.A536T 0.48 tolerated(0.32) probably_damaging(0.999) TCGA-W5-AA39-01 22 21333952 21333952 G T AIFM3 Missense_Mutation p.G538V 0.45 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 22 21563355 21563355 A C GGT2 Silent p.T423T 0.29 TCGA-W5-AA39-01 22 22318376 22318376 T G TOP3B Missense_Mutation p.I375L 0.30 tolerated(0.55) benign(0.004) TCGA-W5-AA39-01 22 29130501 29130501 T C CHEK2 Missense_Mutation p.E70G 0.69 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-W5-AA39-01 22 29440787 29440787 A G ZNRF3 Missense_Mutation p.D218G 0.71 deleterious(0.01) probably_damaging(0.994) TCGA-W5-AA39-01 22 30184790 30184790 T G ASCC2 3'UTR 0.21 TCGA-W5-AA39-01 22 30186459 30186459 C A ASCC2 Missense_Mutation p.G701W 0.56 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 22 31743046 31743046 T G AC005003.1 5'UTR 0.50 TCGA-W5-AA39-01 22 35481519 35481519 C T ISX Nonsense_Mutation p.Q191* 0.54 TCGA-W5-AA39-01 22 36624205 36624205 G A APOL2 Missense_Mutation p.R87W 0.39 tolerated(0.06) probably_damaging(0.96) TCGA-W5-AA39-01 22 36717867 36717867 C A MYH9 Splice_Site p.X236_splice 0.37 TCGA-W5-AA39-01 22 38013089 38013089 G A GGA1 Intron 0.48 TCGA-W5-AA39-01 22 38169866 38169866 A C TRIOBP 3'UTR 0.38 TCGA-W5-AA39-01 22 38508076 38508076 C T PLA2G6 3'UTR 0.56 TCGA-W5-AA39-01 22 39101819 39101819 A G GTPBP1 5'UTR 0.39 TCGA-W5-AA39-01 22 39910497 39910497 T G MIEF1 3'UTR 0.46 TCGA-W5-AA39-01 22 39917554 39917554 A C ATF4 Missense_Mutation p.D35A 0.28 deleterious(0.01) probably_damaging(0.928) TCGA-W5-AA39-01 22 40059833 40059833 A C CACNA1I Missense_Mutation p.E1195A 0.36 deleterious(0.05) benign(0.292) TCGA-W5-AA39-01 22 41075372 41075372 C A MCHR1 5'UTR 0.33 TCGA-W5-AA39-01 22 41513219 41513219 C G EP300 Missense_Mutation p.H41Q 0.32 unknown(0) TCGA-W5-AA39-01 22 41574848 41574848 G A EP300 Missense_Mutation p.S2378N 0.36 benign(0.002) TCGA-W5-AA39-01 22 43634748 43634748 C G SCUBE1 Intron 0.20 TCGA-W5-AA39-01 22 45277235 45277235 G T PHF21B 3'UTR 0.45 TCGA-W5-AA39-01 22 45681856 45681856 T G UPK3A Silent p.T29T 0.24 TCGA-W5-AA39-01 22 48942322 48942322 C T CTA-299D3.8 Intron 0.35 TCGA-W5-AA39-01 22 50278233 50278233 A T ZBED4 Missense_Mutation p.H308L 0.44 tolerated(0.28) probably_damaging(0.984) TCGA-W5-AA39-01 22 50720113 50720113 T A PLXNB2 Missense_Mutation p.E1135V 0.52 tolerated(0.11) probably_damaging(0.968) TCGA-W5-AA39-01 22 50967621 50967621 C T TYMP Missense_Mutation p.V121M 0.43 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 2 100900648 100900648 T G LONRF2 3'UTR 0.50 TCGA-W5-AA39-01 2 101886635 101886635 T C CNOT11 3'UTR 0.40 TCGA-W5-AA39-01 2 101886682 101886682 A C CNOT11 3'UTR 0.38 TCGA-W5-AA39-01 2 102508182 102508182 C T MAP4K4 3'Flank 0.33 TCGA-W5-AA39-01 2 107007431 107007431 G C PLGLA RNA 0.31 TCGA-W5-AA39-01 2 107039624 107039624 T G RGPD3 Missense_Mutation p.K1600T 0.33 tolerated(0.33) benign(0.005) TCGA-W5-AA39-01 2 109150329 109150329 A G AC012487.2 RNA 0.40 TCGA-W5-AA39-01 2 11053983 11053983 C - KCNF1 Frame_Shift_Del p.L479Sfs*2 0.18 TCGA-W5-AA39-01 2 113079392 113079392 A G ZC3H6 Missense_Mutation p.K346E 0.51 deleterious(0.01) probably_damaging(0.993) TCGA-W5-AA39-01 2 113258837 113258837 A C TTL Missense_Mutation p.N175T 0.44 tolerated(0.34) benign(0.005) TCGA-W5-AA39-01 2 114002103 114002103 C T PAX8 Missense_Mutation p.R97H 0.53 deleterious(0.02) probably_damaging(0.997) TCGA-W5-AA39-01 2 11682848 11682848 G A GREB1 Intron 0.46 TCGA-W5-AA39-01 2 118675024 118675024 T G CCDC93 3'UTR 0.42 TCGA-W5-AA39-01 2 128087578 128087578 T G MAP3K2 Missense_Mutation p.N129H 0.42 tolerated(0.19) benign(0.001) TCGA-W5-AA39-01 2 128471295 128471295 T G WDR33 Missense_Mutation p.D1057A 0.45 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-W5-AA39-01 2 132285743 132285743 T C CCDC74A Missense_Mutation p.M67T 0.21 tolerated(1) benign(0.001) TCGA-W5-AA39-01 2 135740852 135740852 A G MAP3K19 Intron 0.44 TCGA-W5-AA39-01 2 136513166 136513166 T G UBXN4 Missense_Mutation p.F138C 0.32 tolerated(0.19) benign(0.001) TCGA-W5-AA39-01 2 139326804 139326804 A T SPOPL 3'UTR 0.14 TCGA-W5-AA39-01 2 148676088 148676088 G A ACVR2A Missense_Mutation p.A297T 0.70 deleterious(0.03) possibly_damaging(0.714) TCGA-W5-AA39-01 2 158977952 158977952 T G UPP2 Missense_Mutation p.D219E 0.33 tolerated(0.4) benign(0.041) TCGA-W5-AA39-01 2 162273323 162273323 C T TBR1 Silent p.H134H 0.52 TCGA-W5-AA39-01 2 166846400 166846400 G C SCN1A 3'UTR 0.47 TCGA-W5-AA39-01 2 169038515 169038515 T G STK39 Missense_Mutation p.K98N 0.45 deleterious(0) benign(0.404) TCGA-W5-AA39-01 2 169820752 169820752 A C ABCB11 Silent p.V714V 0.49 TCGA-W5-AA39-01 2 170734063 170734063 A G UBR3 Missense_Mutation p.S302G 0.54 tolerated(0.31) benign(0) TCGA-W5-AA39-01 2 172964234 172964234 T C DLX2 3'UTR 0.40 TCGA-W5-AA39-01 2 175346540 175346540 A G GPR155 Missense_Mutation p.C49R 0.62 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 2 187351163 187351163 A G ZC3H15 Silent p.K18K 0.43 TCGA-W5-AA39-01 2 191859926 191859926 T C STAT1 Missense_Mutation p.S269G 0.30 tolerated(0.22) benign(0.04) TCGA-W5-AA39-01 2 196822115 196822115 A G DNAH7 Missense_Mutation p.V983A 0.50 deleterious(0.01) probably_damaging(0.966) TCGA-W5-AA39-01 2 198288622 198288622 A C SF3B1 Silent p.S35S 0.47 TCGA-W5-AA39-01 2 201342751 201342751 C A SPATS2L Silent p.A558A 0.45 TCGA-W5-AA39-01 2 201478642 201478642 T C AOX1 Missense_Mutation p.F522L 0.55 tolerated(0.45) benign(0.4) TCGA-W5-AA39-01 2 201531474 201531474 A T AOX1 Missense_Mutation p.Q1203L 0.42 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 2 201642727 201642727 C G RNU1-133P 3'Flank 0.42 TCGA-W5-AA39-01 2 204111487 204111487 T G CYP20A1 Missense_Mutation p.N44K 0.44 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 2 20482963 20482963 T G PUM2 Missense_Mutation p.S489R 0.35 tolerated(0.44) benign(0.127) TCGA-W5-AA39-01 2 209025720 209025720 A T CRYGA Nonsense_Mutation p.C111* 0.26 TCGA-W5-AA39-01 2 209189656 209189656 C G PIKFYVE Missense_Mutation p.R785G 0.35 deleterious(0) probably_damaging(0.971) TCGA-W5-AA39-01 2 210885502 210885502 T C RPE 3'UTR 0.38 TCGA-W5-AA39-01 2 21235170 21235170 A G APOB Missense_Mutation p.S1524P 0.44 probably_damaging(0.994) TCGA-W5-AA39-01 2 216809713 216809713 A C MREG Missense_Mutation p.L173R 0.47 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 2 219270623 219270623 A C CTDSP1 3'UTR 0.39 TCGA-W5-AA39-01 2 219319353 219319353 G C USP37 3'UTR 0.13 TCGA-W5-AA39-01 2 219603258 219603258 T G TTLL4 Missense_Mutation p.L287V 0.50 tolerated(0.47) benign(0.007) TCGA-W5-AA39-01 2 220072980 220072980 T G ZFAND2B Missense_Mutation p.L146R 0.50 tolerated(0.35) possibly_damaging(0.575) TCGA-W5-AA39-01 2 220397059 220397059 G T ASIC4 Missense_Mutation p.W420L 0.50 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 2 220474091 220474092 CT G STK11IP Frame_Shift_Del p.L656Vfs*4 0.38 TCGA-W5-AA39-01 2 224758968 224758968 C T WDFY1 Missense_Mutation p.D272N 0.47 tolerated(0.4) benign(0.033) TCGA-W5-AA39-01 2 224828637 224828637 T G MRPL44 Missense_Mutation p.F271L 0.44 tolerated(0.05) possibly_damaging(0.458) TCGA-W5-AA39-01 2 225738772 225738772 C A DOCK10 Missense_Mutation p.A400S 0.28 tolerated(0.7) benign(0.004) TCGA-W5-AA39-01 2 227661428 227661428 C T IRS1 Missense_Mutation p.G676E 0.55 deleterious(0.02) benign(0.255) TCGA-W5-AA39-01 2 228118346 228118346 A G COL4A3 Missense_Mutation p.N253D 0.38 probably_damaging(0.971) TCGA-W5-AA39-01 2 228401415 228401415 T G AGFG1 Missense_Mutation p.F451C 0.39 deleterious(0) probably_damaging(0.95) TCGA-W5-AA39-01 2 233422641 233422641 T G EIF4E2 Silent p.T61T 0.44 TCGA-W5-AA39-01 2 233660789 233660809 GGCTTATCTCCAAGACAGTGC - GIGYF2 In_Frame_Del p.A521_A527del 0.50 TCGA-W5-AA39-01 2 238934042 238934042 A G UBE2F Silent p.E114E 0.44 TCGA-W5-AA39-01 2 24103602 24103602 T C ATAD2B Missense_Mutation p.I270V 0.38 tolerated(0.54) benign(0.05) TCGA-W5-AA39-01 2 24118774 24118774 G A ATAD2B Nonsense_Mutation p.Q95* 0.43 TCGA-W5-AA39-01 2 241451322 241451322 T C ANKMY1 Missense_Mutation p.R659G 0.44 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 2 242008393 242008393 C A SNED1 Missense_Mutation p.H1088N 0.38 tolerated(0.29) possibly_damaging(0.497) TCGA-W5-AA39-01 2 242433442 242433442 G A FARP2 Missense_Mutation p.G1023R 0.36 tolerated(0.38) benign(0.004) TCGA-W5-AA39-01 2 25043665 25043665 G A ADCY3 Silent p.H1060H 0.37 TCGA-W5-AA39-01 2 27601102 27601102 G A ZNF513 Silent p.F312F 0.68 TCGA-W5-AA39-01 2 29286672 29286672 T C C2orf71 3'UTR 0.50 TCGA-W5-AA39-01 2 29295281 29295281 T A C2orf71 Missense_Mutation p.Q616L 0.46 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 2 30381963 30381963 A G YPEL5 3'UTR 0.41 TCGA-W5-AA39-01 2 31751121 31751121 A G AL133247.2 5'Flank 0.30 TCGA-W5-AA39-01 2 31805752 31805752 G A SRD5A2 RNA 0.49 TCGA-W5-AA39-01 2 32667184 32667184 T C BIRC6 Silent p.V1332V 0.43 TCGA-W5-AA39-01 2 32678936 32678936 T G BIRC6 Missense_Mutation p.L1560R 0.38 probably_damaging(0.996) TCGA-W5-AA39-01 2 42588469 42588469 G T COX7A2L 5'UTR 0.31 TCGA-W5-AA39-01 2 43450908 43450908 T A ZFP36L2 3'UTR 0.46 TCGA-W5-AA39-01 2 46414474 46414474 T A PRKCE 3'UTR 0.33 TCGA-W5-AA39-01 2 55516605 55516605 A C CCDC88A 3'UTR 0.40 TCGA-W5-AA39-01 2 55746877 55746877 G C CCDC104 5'UTR 0.38 TCGA-W5-AA39-01 2 61149151 61149151 G C REL Silent p.L447L 0.48 TCGA-W5-AA39-01 2 61523963 61523963 A C USP34 Missense_Mutation p.M1409R 0.36 tolerated(0.42) benign(0) TCGA-W5-AA39-01 2 62100224 62100224 A T CCT4 Silent p.A346A 0.40 TCGA-W5-AA39-01 2 64069077 64069077 C T UGP2 5'UTR 0.29 TCGA-W5-AA39-01 2 64118595 64118595 T C UGP2 3'UTR 0.42 TCGA-W5-AA39-01 2 69691213 69691213 G C AAK1 3'Flank 0.44 TCGA-W5-AA39-01 2 70188309 70188309 G A ASPRV1 Missense_Mutation p.A171V 0.43 deleterious(0.03) benign(0.367) TCGA-W5-AA39-01 2 71215298 71215298 A C TEX261 3'UTR 0.65 TCGA-W5-AA39-01 2 71575635 71575635 C G ZNF638 5'UTR 0.46 TCGA-W5-AA39-01 2 71913629 71913629 T C DYSF 3'UTR 0.57 TCGA-W5-AA39-01 2 73518868 73518868 C T EGR4 Missense_Mutation p.R496H 0.45 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 2 75100419 75100419 G T HK2 Missense_Mutation p.W171L 0.55 deleterious(0) probably_damaging(0.93) TCGA-W5-AA39-01 2 84930673 84930673 A C DNAH6 Missense_Mutation p.E2739A 0.41 tolerated(0.58) benign(0.027) TCGA-W5-AA39-01 2 85771406 85771406 T G MAT2A 3'UTR 0.46 TCGA-W5-AA39-01 2 85820227 85820227 A T VAMP5 Missense_Mutation p.S100C 0.33 deleterious(0) possibly_damaging(0.789) TCGA-W5-AA39-01 2 86697428 86697428 G A KDM3A Missense_Mutation p.A541T 0.33 deleterious(0) possibly_damaging(0.678) TCGA-W5-AA39-01 2 97498692 97498692 C T CNNM3 3'UTR 0.52 TCGA-W5-AA39-01 3 101312007 101312007 T G PCNP 3'UTR 0.24 TCGA-W5-AA39-01 3 101395620 101395620 G C ZBTB11 Missense_Mutation p.L47V 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-W5-AA39-01 3 101578403 101578403 C T NFKBIZ 3'UTR 0.40 TCGA-W5-AA39-01 3 119217752 119217752 C T TIMMDC1 Missense_Mutation p.L58F 0.35 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 3 120320325 120320325 T A NDUFB4 Intron 0.21 TCGA-W5-AA39-01 3 123332738 123332738 T C MYLK 3'UTR 0.26 TCGA-W5-AA39-01 3 124826699 124826699 T A SLC12A8 Missense_Mutation p.E444V 0.38 deleterious(0.04) benign(0.322) TCGA-W5-AA39-01 3 126916189 126916189 G T C3orf56 Missense_Mutation p.D221Y 0.22 tolerated(0.15) benign(0.094) TCGA-W5-AA39-01 3 127291928 127291928 T G TPRA1 3'Flank 0.47 TCGA-W5-AA39-01 3 129546839 129546839 G T TMCC1 Missense_Mutation p.P128Q 0.38 tolerated_low_confidence(0.22) benign(0.014) TCGA-W5-AA39-01 3 130452666 130452666 A G PIK3R4 Silent p.C392C 0.33 TCGA-W5-AA39-01 3 134514465 134514465 C T EPHB1 5'UTR 0.27 TCGA-W5-AA39-01 3 135866603 135866603 A C PPP2R3A 3'UTR 0.44 TCGA-W5-AA39-01 3 136059372 136059372 A G STAG1 Silent p.D1211D 0.27 TCGA-W5-AA39-01 3 138407783 138407783 T G PIK3CB Missense_Mutation p.Q690H 0.34 deleterious(0.04) benign(0.001) TCGA-W5-AA39-01 3 141162287 141162287 A T ZBTB38 Missense_Mutation p.S353C 0.45 deleterious(0.01) possibly_damaging(0.832) TCGA-W5-AA39-01 3 141644714 141644714 A C ATP1B3 3'UTR 0.16 TCGA-W5-AA39-01 3 142680222 142680222 A G PAQR9 3'UTR 0.55 TCGA-W5-AA39-01 3 142681920 142681920 A C PAQR9 Missense_Mutation p.F87V 0.23 deleterious(0) probably_damaging(0.982) TCGA-W5-AA39-01 3 146303848 146303848 A G PLSCR5 3'UTR 0.57 TCGA-W5-AA39-01 3 148894184 148894184 T C CP Missense_Mutation p.S1012G 0.37 deleterious(0) benign(0.006) TCGA-W5-AA39-01 3 148899805 148899805 A C CP Silent p.T847T 0.59 TCGA-W5-AA39-01 3 150340940 150340940 G A SELT Nonsense_Mutation p.W120* 0.57 TCGA-W5-AA39-01 3 153993897 153993897 A C DHX36 3'UTR 0.27 TCGA-W5-AA39-01 3 15482464 15482464 A T EAF1 3'UTR 0.67 TCGA-W5-AA39-01 3 15482467 15482467 T G EAF1 3'UTR 0.67 TCGA-W5-AA39-01 3 154858051 154858051 A C MME Missense_Mutation p.Q309H 0.60 deleterious(0.03) possibly_damaging(0.811) TCGA-W5-AA39-01 3 156424054 156424054 A G TIPARP 3'UTR 0.42 TCGA-W5-AA39-01 3 169820688 169820688 T A PHC3 Missense_Mutation p.S835C 0.40 tolerated(0.08) possibly_damaging(0.893) TCGA-W5-AA39-01 3 170715825 170715825 A C SLC2A2 Missense_Mutation p.F481C 0.48 deleterious(0.01) probably_damaging(0.928) TCGA-W5-AA39-01 3 171394504 171394504 C T PLD1 Splice_Site p.X705_splice 0.54 TCGA-W5-AA39-01 3 172118369 172118369 C G FNDC3B 3'UTR 0.56 TCGA-W5-AA39-01 3 172241242 172241242 T G TNFSF10 5'UTR 0.23 TCGA-W5-AA39-01 3 182662380 182662380 C T DCUN1D1 3'UTR 0.68 TCGA-W5-AA39-01 3 182756844 182756844 T A MCCC1 Silent p.T449T 0.24 TCGA-W5-AA39-01 3 183528369 183528369 T C YEATS2 Nonstop_Mutation p.*1423Rext*3 0.38 TCGA-W5-AA39-01 3 184039802 184039802 A T EIF4G1 Missense_Mutation p.E484V 0.34 tolerated(0.15) benign(0.068) TCGA-W5-AA39-01 3 184040641 184040641 A C EIF4G1 Missense_Mutation p.K617Q 0.27 deleterious(0) probably_damaging(0.971) TCGA-W5-AA39-01 3 185329428 185329449 GTGTTTCTAAGTTCTCAAAGAA - SENP2 Splice_Site p.X241_splice 0.34 TCGA-W5-AA39-01 3 185542734 185542734 A C IGF2BP2 Silent p.L5L 0.28 TCGA-W5-AA39-01 3 185764454 185764454 C T ETV5 3'UTR 0.30 TCGA-W5-AA39-01 3 186269020 186269020 T G TBCCD1 Missense_Mutation p.E531D 0.33 tolerated(0.19) benign(0.039) TCGA-W5-AA39-01 3 186760575 186760575 A C ST6GAL1 Missense_Mutation p.E28D 0.39 probably_damaging(0.96) TCGA-W5-AA39-01 3 187088734 187088734 A T RTP4 Missense_Mutation p.E105V 0.17 deleterious(0) probably_damaging(0.959) TCGA-W5-AA39-01 3 194152559 194152559 T A ATP13A3 Nonsense_Mutation p.K770* 0.54 TCGA-W5-AA39-01 3 194169221 194169221 G A ATP13A3 Missense_Mutation p.T372I 0.31 tolerated(0.06) benign(0.024) TCGA-W5-AA39-01 3 19432012 19432012 C A KCNH8 Missense_Mutation p.S284Y 0.73 deleterious(0) probably_damaging(0.993) TCGA-W5-AA39-01 3 194996602 194996602 A G ACAP2 3'UTR 0.23 TCGA-W5-AA39-01 3 195509900 195509900 C T MUC4 Missense_Mutation p.V2851I 0.45 benign(0.044) TCGA-W5-AA39-01 3 195609127 195609127 T A TNK2 Missense_Mutation p.T291S 0.30 tolerated(0.23) benign(0.008) TCGA-W5-AA39-01 3 195619593 195619593 T G TNK2 Intron 0.25 TCGA-W5-AA39-01 3 196158308 196158308 A C UBXN7 Intron 0.53 TCGA-W5-AA39-01 3 196626893 196626893 A C SENP5 Missense_Mutation p.D573A 0.28 deleterious(0) probably_damaging(0.998) TCGA-W5-AA39-01 3 30686364 30686364 A G TGFBR2 Missense_Mutation p.T99A 0.90 deleterious(0.04) benign(0.149) TCGA-W5-AA39-01 3 33188435 33188435 C A CRTAP 3'UTR 0.78 TCGA-W5-AA39-01 3 33538882 33538882 C T CLASP2 3'UTR 0.77 TCGA-W5-AA39-01 3 35721338 35721338 A G ARPP21 5'UTR 0.78 TCGA-W5-AA39-01 3 37094636 37094636 G A LRRFIP2 3'UTR 0.69 TCGA-W5-AA39-01 3 38401886 38401886 T G XYLB Missense_Mutation p.L66R 0.83 deleterious(0.01) possibly_damaging(0.596) TCGA-W5-AA39-01 3 40231505 40231505 G A MYRIP Missense_Mutation p.A406T 0.75 tolerated(0.17) benign(0.303) TCGA-W5-AA39-01 3 45637209 45637209 T G LIMD1 Missense_Mutation p.L280V 0.70 tolerated(0.22) benign(0.031) TCGA-W5-AA39-01 3 45719739 45719739 C G LIMD1 3'UTR 0.57 TCGA-W5-AA39-01 3 47860745 47860745 A G DHX30 Intron 0.78 TCGA-W5-AA39-01 3 49395300 49395300 G T GPX1 Intron 0.46 TCGA-W5-AA39-01 3 49396837 49396837 C G RHOA 3'UTR 1.00 TCGA-W5-AA39-01 3 49967045 49967045 T - MON1A Frame_Shift_Del p.N92Tfs*24 0.45 TCGA-W5-AA39-01 3 50336678 50336678 T G NAT6 5'UTR 0.71 TCGA-W5-AA39-01 3 52441997 52441997 A C BAP1 Missense_Mutation p.F118V 0.86 tolerated(0.08) probably_damaging(0.995) TCGA-W5-AA39-01 3 52712524 52712533 TGGTGCCCTA - PBRM1 Frame_Shift_Del p.R74Sfs*18 0.68 TCGA-W5-AA39-01 3 52812387 52812387 A C ITIH1 Missense_Mutation p.K57T 0.60 tolerated(0.21) probably_damaging(1) TCGA-W5-AA39-01 3 97594051 97594051 C G CRYBG3 Missense_Mutation p.A1338G 0.27 TCGA-W5-AA39-01 3 97868425 97868425 T G OR5H14 Missense_Mutation p.L66V 0.19 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 4 100130084 100130084 A G ADH6 Missense_Mutation p.V190A 0.62 deleterious(0.01) probably_damaging(0.988) TCGA-W5-AA39-01 4 101946535 101946535 T C PPP3CA 3'UTR 0.79 TCGA-W5-AA39-01 4 111119626 111119626 A G ELOVL6 Intron 0.75 TCGA-W5-AA39-01 4 1231564 1231564 A T CTBP1 Intron 0.56 TCGA-W5-AA39-01 4 123168345 123168360 AACCTGGTAGAACATC - KIAA1109 Frame_Shift_Del p.P1783Ifs*35 0.84 TCGA-W5-AA39-01 4 1235300 1235300 A C CTBP1 Intron 0.28 TCGA-W5-AA39-01 4 13570576 13570576 G A BOD1L1 3'UTR 0.50 TCGA-W5-AA39-01 4 147363937 147363937 A C SLC10A7 Missense_Mutation p.L145V 0.77 deleterious(0.01) possibly_damaging(0.495) TCGA-W5-AA39-01 4 156824869 156824869 T G TDO2 5'UTR 0.72 TCGA-W5-AA39-01 4 156831267 156831267 T G TDO2 Silent p.P174P 0.82 TCGA-W5-AA39-01 4 160262761 160262761 T G RAPGEF2 Missense_Mutation p.D699E 0.57 deleterious(0) probably_damaging(0.994) TCGA-W5-AA39-01 4 1695110 1695110 T A SLBP 3'UTR 0.25 TCGA-W5-AA39-01 4 169824935 169824935 A G PALLD Missense_Mutation p.I834V 0.65 tolerated(0.08) benign(0.023) TCGA-W5-AA39-01 4 17600083 17600083 A C LAP3 Missense_Mutation p.D361A 0.12 deleterious(0) probably_damaging(0.92) TCGA-W5-AA39-01 4 17609230 17609230 G T LAP3 3'UTR 0.25 TCGA-W5-AA39-01 4 17621579 17621579 A G MED28 Missense_Mutation p.E72G 0.08 deleterious(0) possibly_damaging(0.875) TCGA-W5-AA39-01 4 22694644 22694644 T G GBA3 Silent p.A2A 0.44 TCGA-W5-AA39-01 4 25363483 25363483 A C ZCCHC4 Silent p.V338V 0.42 TCGA-W5-AA39-01 4 38869455 38869455 G A FAM114A1 Intron 0.33 TCGA-W5-AA39-01 4 39825071 39825071 T A PDS5A 3'UTR 0.28 TCGA-W5-AA39-01 4 39825082 39825082 T C PDS5A 3'UTR 0.30 TCGA-W5-AA39-01 4 41672773 41672773 A G LIMCH1 Intron 0.62 TCGA-W5-AA39-01 4 4242110 4242110 A G TMEM128 Silent p.Y88Y 0.47 TCGA-W5-AA39-01 4 435664 435674 GGGTTTCTCTC - ZNF721 Frame_Shift_Del p.G861Vfs*11 0.36 TCGA-W5-AA39-01 4 46930297 46930297 T C GABRA4 Missense_Mutation p.Y537C 0.27 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 4 48988658 48988658 T G CWH43 Intron 0.12 TCGA-W5-AA39-01 4 56759748 56759748 A G EXOC1 Silent p.K585K 0.56 TCGA-W5-AA39-01 4 6643621 6643621 T A MRFAP1 3'UTR 0.44 TCGA-W5-AA39-01 4 69093790 69093790 T C TMPRSS11B Missense_Mutation p.N364D 0.67 deleterious(0.05) benign(0.027) TCGA-W5-AA39-01 4 69520862 69520862 T - UGT2B15 Frame_Shift_Del p.G349Vfs*25 0.43 TCGA-W5-AA39-01 4 72629209 72629228 AGCTGGAGTCTCTAGAAAAC - GC Splice_Site p.X222_splice 0.85 TCGA-W5-AA39-01 4 74274503 74274507 GAAGA - ALB Frame_Shift_Del p.E155Dfs*9 0.71 TCGA-W5-AA39-01 4 74902905 74902905 A G CXCL3 3'UTR 0.72 TCGA-W5-AA39-01 4 78639527 78639527 G C CNOT6L 3'UTR 0.71 TCGA-W5-AA39-01 4 79360216 79360216 A G FRAS1 Missense_Mutation p.T1843A 0.58 benign(0.019) TCGA-W5-AA39-01 4 83411279 83411279 T C TMEM150C Missense_Mutation p.E159G 0.87 tolerated(0.24) possibly_damaging(0.836) TCGA-W5-AA39-01 4 85687060 85687060 A C WDFY3 Missense_Mutation p.N1697K 0.76 tolerated(0.12) possibly_damaging(0.84) TCGA-W5-AA39-01 5 10402698 10402698 G A MARCH6 Nonsense_Mutation p.W392* 0.15 TCGA-W5-AA39-01 5 10433774 10433774 C T MARCH6 Missense_Mutation p.P904L 0.76 tolerated_low_confidence(0.06) unknown(0) TCGA-W5-AA39-01 5 108714025 108714025 T G PJA2 Missense_Mutation p.E388A 0.25 tolerated(0.05) benign(0.141) TCGA-W5-AA39-01 5 1093708 1093730 GTTGGTGTAGTTGGCCAGCTTGT - SLC12A7 Frame_Shift_Del p.N87Tfs*259 0.55 TCGA-W5-AA39-01 5 111065333 111065333 T A NREP 3'Flank 0.54 TCGA-W5-AA39-01 5 111594968 111594968 G A EPB41L4A Silent p.H251H 0.26 TCGA-W5-AA39-01 5 114915062 114915062 T C TMED7-TICAM2 3'UTR 0.17 TCGA-W5-AA39-01 5 118486011 118486011 A C DMXL1 Missense_Mutation p.S1497R 0.47 deleterious(0.04) probably_damaging(1) TCGA-W5-AA39-01 5 118584333 118584333 A G DMXL1 3'UTR 0.22 TCGA-W5-AA39-01 5 118604498 118604498 A C TNFAIP8 5'UTR 0.45 TCGA-W5-AA39-01 5 122425002 122425002 G A PRDM6 5'UTR 0.29 TCGA-W5-AA39-01 5 131530672 131530672 C - P4HA2 Frame_Shift_Del p.G495Vfs*32 0.43 TCGA-W5-AA39-01 5 131811724 131811724 T G AC116366.6 5'Flank 0.52 TCGA-W5-AA39-01 5 131931434 131931434 G A RAD50 Silent p.K713K 0.57 TCGA-W5-AA39-01 5 132212099 132212099 A C AFF4 3'UTR 0.69 TCGA-W5-AA39-01 5 132216181 132216181 A C AFF4 3'UTR 0.22 TCGA-W5-AA39-01 5 132561381 132561381 T G FSTL4 Silent p.S382S 0.53 TCGA-W5-AA39-01 5 133481728 133481728 T G TCF7 Intron 0.27 TCGA-W5-AA39-01 5 133918726 133918726 C G JADE2 3'UTR 0.56 TCGA-W5-AA39-01 5 134195284 134195284 A C C5orf24 3'UTR 0.35 TCGA-W5-AA39-01 5 134195287 134195287 T C C5orf24 3'UTR 0.35 TCGA-W5-AA39-01 5 135416270 135416270 T G VTRNA2-1 RNA 0.57 TCGA-W5-AA39-01 5 135469456 135469456 A C SMAD5 Intron 0.44 TCGA-W5-AA39-01 5 137213210 137213210 G A MYOT Missense_Mutation p.R178H 0.67 deleterious(0.01) probably_damaging(0.985) TCGA-W5-AA39-01 5 137685017 137685017 A G FAM53C 3'UTR 0.28 TCGA-W5-AA39-01 5 138700372 138700372 A C PAIP2 Missense_Mutation p.Q86H 0.32 tolerated(0.07) benign(0.162) TCGA-W5-AA39-01 5 138700374 138700374 T G PAIP2 Missense_Mutation p.I87S 0.33 deleterious(0) benign(0.017) TCGA-W5-AA39-01 5 138723312 138723312 G T MZB1 3'UTR 0.66 TCGA-W5-AA39-01 5 139496259 139496259 T A PURA 3'UTR 0.49 TCGA-W5-AA39-01 5 139938330 139938338 CGCAGGCGG GCC APBB3 In_Frame_Del p.R439_R441delinsA 0.61 TCGA-W5-AA39-01 5 139939978 139939978 G C APBB3 Missense_Mutation p.R389G 0.13 tolerated(0.68) benign(0.106) TCGA-W5-AA39-01 5 140554443 140554443 C T PCDHB7 Missense_Mutation p.A676V 0.12 tolerated_low_confidence(0.87) benign(0.005) TCGA-W5-AA39-01 5 140724331 140724331 A T PCDHGA3 Missense_Mutation p.Q244L 0.22 tolerated_low_confidence(0.16) benign(0.035) TCGA-W5-AA39-01 5 140730180 140730180 T C PCDHGB1 Missense_Mutation p.V118A 0.25 deleterious(0.01) benign(0.081) TCGA-W5-AA39-01 5 140736182 140736182 T C PCDHGA4 Missense_Mutation p.L472S 0.57 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-W5-AA39-01 5 140755037 140755037 G A PCDHGA6 Missense_Mutation p.E463K 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-W5-AA39-01 5 141694180 141694180 C A SPRY4 Missense_Mutation p.C188F 0.28 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 5 142660753 142660753 A C NR3C1 3'UTR 0.31 TCGA-W5-AA39-01 5 147498034 147498034 A T SPINK5 Missense_Mutation p.N716I 0.16 deleterious(0) possibly_damaging(0.676) TCGA-W5-AA39-01 5 153436161 153436161 T G MFAP3 3'UTR 0.64 TCGA-W5-AA39-01 5 153835544 153835544 A T SAP30L Missense_Mutation p.S170C 0.23 deleterious(0) possibly_damaging(0.88) TCGA-W5-AA39-01 5 158749517 158749517 G C IL12B Missense_Mutation p.P123A 0.45 deleterious(0.01) benign(0.039) TCGA-W5-AA39-01 5 170814890 170814890 C T NPM1 5'UTR 0.54 TCGA-W5-AA39-01 5 172195617 172195617 A G DUSP1 3'UTR 0.71 TCGA-W5-AA39-01 5 175819722 175819722 C G CLTB 3'UTR 0.47 TCGA-W5-AA39-01 5 178154001 178154001 C G ZNF354A Silent p.L53L 0.57 TCGA-W5-AA39-01 5 178359047 178359047 A C ZFP2 Missense_Mutation p.N245H 0.60 deleterious(0.05) possibly_damaging(0.639) TCGA-W5-AA39-01 5 178506225 178506225 A C ZNF354C Missense_Mutation p.R264S 0.23 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 5 180477173 180477173 C G BTNL9 Silent p.P180P 0.51 TCGA-W5-AA39-01 5 36181926 36181926 T G SKP2 Silent p.L356L 0.18 TCGA-W5-AA39-01 5 38475482 38475482 C G LIFR 3'UTR 0.84 TCGA-W5-AA39-01 5 52779381 52779381 A G FST Missense_Mutation p.N109D 0.28 tolerated(0.1) possibly_damaging(0.833) TCGA-W5-AA39-01 5 54442593 54442593 A C CDC20B Missense_Mutation p.I73S 0.36 deleterious(0) possibly_damaging(0.779) TCGA-W5-AA39-01 5 54468121 54468121 A G CDC20B Intron 0.48 TCGA-W5-AA39-01 5 54763893 54763893 A G PPAP2A Missense_Mutation p.Y100H 0.58 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 5 61747688 61747688 A C IPO11 Missense_Mutation p.L188F 0.26 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 5 6337401 6337401 C A CTD-2324F15.2 RNA 0.62 TCGA-W5-AA39-01 5 64020374 64020374 T A SREK1IP1 Missense_Mutation p.E102V 0.06 tolerated(0.12) unknown(0) TCGA-W5-AA39-01 5 67522582 67522582 G T PIK3R1 Missense_Mutation p.G27C 0.60 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 5 67569785 67569785 T C PIK3R1 Missense_Mutation p.L149P 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-W5-AA39-01 5 68680714 68680714 T A RAD17 Missense_Mutation p.M211K 0.53 deleterious(0) possibly_damaging(0.566) TCGA-W5-AA39-01 5 68710358 68710360 GCG - RAD17 3'UTR 0.33 TCGA-W5-AA39-01 5 70741487 70741487 C G RP11-136K7.2 RNA 0.33 TCGA-W5-AA39-01 5 72378651 72378651 A T FCHO2 Silent p.G748G 0.60 TCGA-W5-AA39-01 5 74657332 74657332 A C HMGCR 3'UTR 0.17 TCGA-W5-AA39-01 5 79095972 79095972 A C CMYA5 3'UTR 0.21 TCGA-W5-AA39-01 5 90079724 90079724 A G GPR98 Silent p.L4501L 0.57 TCGA-W5-AA39-01 5 90079728 90079728 A G GPR98 Missense_Mutation p.S4503G 0.85 possibly_damaging(0.827) TCGA-W5-AA39-01 5 90079731 90079731 A G GPR98 Missense_Mutation p.R4504G 0.84 benign(0.175) TCGA-W5-AA39-01 5 90079733 90079733 A C GPR98 Missense_Mutation p.R4504S 0.31 benign(0.092) TCGA-W5-AA39-01 5 95149998 95149998 A G GLRX 3'UTR 0.25 TCGA-W5-AA39-01 5 95236433 95236433 A G ELL2 Silent p.P306P 0.31 TCGA-W5-AA39-01 5 98240741 98240741 T C CHD1 Missense_Mutation p.S39G 0.43 deleterious_low_confidence(0.02) benign(0.153) TCGA-W5-AA39-01 6 100054826 100054826 G A PRDM13 5'UTR 0.56 TCGA-W5-AA39-01 6 100062584 100062584 A G PRDM13 Silent p.T691T 0.50 TCGA-W5-AA39-01 6 10556571 10556571 A C GCNT2 Intron 0.69 TCGA-W5-AA39-01 6 10621588 10621588 T C GCNT2 Silent p.V310V 0.35 TCGA-W5-AA39-01 6 107006479 107006479 C T AIM1 Missense_Mutation p.S1537F 0.25 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 6 107980095 107980095 T G SOBP 3'UTR 0.68 TCGA-W5-AA39-01 6 111498823 111498823 A C SLC16A10 Silent p.G299G 0.42 TCGA-W5-AA39-01 6 111982779 111982779 A C FYN 3'UTR 0.60 TCGA-W5-AA39-01 6 114182578 114182578 A C MARCKS 3'UTR 0.25 TCGA-W5-AA39-01 6 1314771 1314771 T A FOXQ1 3'UTR 0.59 TCGA-W5-AA39-01 6 131603238 131603238 T G AKAP7 3'UTR 0.60 TCGA-W5-AA39-01 6 131894380 131894380 A G ARG1 5'UTR 0.32 TCGA-W5-AA39-01 6 131895242 131895242 G C ARG1 Intron 0.37 TCGA-W5-AA39-01 6 133014343 133014343 A C VNN1 Missense_Mutation p.F216V 0.29 deleterious(0) probably_damaging(0.968) TCGA-W5-AA39-01 6 133034964 133034964 C T VNN1 Splice_Site p.X70_splice 0.36 TCGA-W5-AA39-01 6 133137642 133137642 G T RPS12 Missense_Mutation p.E58D 0.50 deleterious(0.02) benign(0.014) TCGA-W5-AA39-01 6 135358028 135358028 T G HBS1L Intron 0.20 TCGA-W5-AA39-01 6 136597516 136597516 A G BCLAF1 Missense_Mutation p.Y383H 0.19 deleterious(0.03) possibly_damaging(0.607) TCGA-W5-AA39-01 6 139693947 139693947 A G CITED2 3'UTR 0.56 TCGA-W5-AA39-01 6 144744760 144744760 A T UTRN Missense_Mutation p.N104Y 0.70 deleterious(0) possibly_damaging(0.454) TCGA-W5-AA39-01 6 151869440 151869440 T G CCDC170 Missense_Mutation p.L197R 0.50 deleterious(0) probably_damaging(0.952) TCGA-W5-AA39-01 6 153296425 153296425 A G FBXO5 Silent p.S145S 0.51 TCGA-W5-AA39-01 6 153296461 153296461 T C FBXO5 Missense_Mutation p.I133M 0.27 tolerated(0.42) benign(0.023) TCGA-W5-AA39-01 6 157505453 157505453 A G ARID1B Missense_Mutation p.Y1145C 0.32 probably_damaging(1) TCGA-W5-AA39-01 6 159208198 159208198 A C EZR Missense_Mutation p.F45C 0.62 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 6 160113306 160113306 C T SOD2 Intron 0.64 TCGA-W5-AA39-01 6 160511104 160511104 A C IGF2R Silent p.G2208G 0.25 TCGA-W5-AA39-01 6 163991896 163991896 A C QKI 3'UTR 0.64 TCGA-W5-AA39-01 6 167717430 167717430 A G UNC93A Missense_Mutation p.M217V 0.31 deleterious(0.01) benign(0.001) TCGA-W5-AA39-01 6 168307886 168307886 T C MLLT4 Silent p.S562S 0.41 TCGA-W5-AA39-01 6 168348587 168348587 A C MLLT4 Missense_Mutation p.K1196T 0.47 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-W5-AA39-01 6 170597586 170597586 T G DLL1 Splice_Site p.X138_splice 0.38 TCGA-W5-AA39-01 6 17608682 17608682 T A FAM8A1 3'UTR 0.33 TCGA-W5-AA39-01 6 21597329 21597329 T C SOX4 3'UTR 0.55 TCGA-W5-AA39-01 6 21598054 21598062 TGTTTACAC - SOX4 3'UTR 0.54 TCGA-W5-AA39-01 6 25850686 25850686 C T SLC17A3 Splice_Site p.X331_splice 0.59 TCGA-W5-AA39-01 6 27420544 27420544 A C ZNF184 Missense_Mutation p.L265R 0.43 deleterious(0) probably_damaging(0.992) TCGA-W5-AA39-01 6 27783253 27783253 T G HIST1H2BM 3'UTR 0.27 TCGA-W5-AA39-01 6 30530916 30530916 T G PRR3 3'UTR 0.64 TCGA-W5-AA39-01 6 30611766 30611766 T A ATAT1 Intron 0.26 TCGA-W5-AA39-01 6 31627753 31627753 T C C6orf47 5'UTR 0.45 TCGA-W5-AA39-01 6 31744571 31744571 C G VWA7 Intron 0.44 TCGA-W5-AA39-01 6 31913912 31913912 T G CFB 5'UTR 0.53 TCGA-W5-AA39-01 6 31938791 31938791 C A DXO Nonsense_Mutation p.E164* 0.51 TCGA-W5-AA39-01 6 32086802 32086813 CAGTACTGCTTG - ATF6B In_Frame_Del p.Q358_L361del 0.70 TCGA-W5-AA39-01 6 32166895 32166895 G A NOTCH4 Missense_Mutation p.P1448L 0.35 tolerated(0.7) benign(0.025) TCGA-W5-AA39-01 6 32820888 32820888 G A TAP1 Missense_Mutation p.L236F 0.28 deleterious(0.02) possibly_damaging(0.452) TCGA-W5-AA39-01 6 32904906 32904906 T C HLA-DMB Intron 0.55 TCGA-W5-AA39-01 6 33631568 33631568 C G ITPR3 Missense_Mutation p.C353W 0.20 tolerated(0.19) benign(0.01) TCGA-W5-AA39-01 6 37441251 37441251 T C CMTR1 Silent p.T565T 0.52 TCGA-W5-AA39-01 6 41751913 41751913 C G PRICKLE4 Missense_Mutation p.N59K 0.51 tolerated(0.18) benign(0.164) TCGA-W5-AA39-01 6 42644579 42644579 T G UBR2 Silent p.A1482A 0.61 TCGA-W5-AA39-01 6 42952327 42952327 G A PPP2R5D 5'UTR 0.42 TCGA-W5-AA39-01 6 43022170 43022170 T C MRPL2 Missense_Mutation p.K254E 0.16 tolerated(0.16) benign(0.158) TCGA-W5-AA39-01 6 43148092 43148092 C T SRF 3'UTR 0.58 TCGA-W5-AA39-01 6 43266024 43266024 T C SLC22A7 5'UTR 0.55 TCGA-W5-AA39-01 6 46630146 46630146 T G SLC25A27 Silent p.V139V 0.23 TCGA-W5-AA39-01 6 49574864 49574864 T G RHAG Silent p.T379T 0.73 TCGA-W5-AA39-01 6 55638874 55638874 C A BMP5 Missense_Mutation p.D334Y 0.54 deleterious(0) benign(0.221) TCGA-W5-AA39-01 6 64286667 64286667 A C PTP4A1 5'UTR 0.65 TCGA-W5-AA39-01 6 64416712 64416712 A C PHF3 Silent p.A1219A 0.26 TCGA-W5-AA39-01 6 7249158 7249158 T G RREB1 Missense_Mutation p.L1729R 0.50 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-W5-AA39-01 6 74229629 74229629 T G EEF1A1 Missense_Mutation p.K41Q 0.63 deleterious_low_confidence(0) benign(0.329) TCGA-W5-AA39-01 6 7880449 7880449 A G BMP6 Missense_Mutation p.Y472C 0.54 tolerated(0.17) probably_damaging(0.946) TCGA-W5-AA39-01 6 86235879 86235879 T G SNX14 Missense_Mutation p.Q691P 0.28 deleterious(0.01) probably_damaging(0.969) TCGA-W5-AA39-01 6 86267770 86267770 A C SNX14 Missense_Mutation p.I186M 0.23 deleterious(0.01) possibly_damaging(0.824) TCGA-W5-AA39-01 6 86351134 86351134 T C SYNCRIP Silent p.G8G 0.50 TCGA-W5-AA39-01 6 88410523 88410523 T G AKIRIN2 Intron 0.24 TCGA-W5-AA39-01 6 90449961 90449961 T G MDN1 Missense_Mutation p.K1529Q 0.55 probably_damaging(1) TCGA-W5-AA39-01 6 90604202 90604202 C G GJA10 Missense_Mutation p.N5K 0.29 deleterious(0.01) probably_damaging(0.954) TCGA-W5-AA39-01 7 102920595 102920595 T G DPY19L2P2 RNA 0.31 TCGA-W5-AA39-01 7 102920615 102920615 T C DPY19L2P2 RNA 0.40 TCGA-W5-AA39-01 7 105400926 105400926 A C ATXN7L1 Intron 0.39 TCGA-W5-AA39-01 7 107258885 107258885 C A BCAP29 Missense_Mutation p.F294L 0.48 tolerated_low_confidence(0.15) benign(0) TCGA-W5-AA39-01 7 1132689 1132689 T A GPER1 3'UTR 0.42 TCGA-W5-AA39-01 7 11419301 11419301 A T THSD7A Missense_Mutation p.S1516T 0.42 tolerated(0.45) benign(0.171) TCGA-W5-AA39-01 7 116595119 116595119 A T ST7-OT4 5'UTR 0.40 TCGA-W5-AA39-01 7 1197813 1197813 T G ZFAND2A Missense_Mutation p.E12D 0.32 tolerated(0.08) probably_damaging(0.999) TCGA-W5-AA39-01 7 120496757 120496757 A C TSPAN12 Missense_Mutation p.F21V 0.36 deleterious(0) possibly_damaging(0.901) TCGA-W5-AA39-01 7 130147634 130147634 G A MEST 3'Flank 0.33 TCGA-W5-AA39-01 7 131175103 131175103 C T MKLN1 3'UTR 0.59 TCGA-W5-AA39-01 7 131887488 131887488 G A PLXNA4 Missense_Mutation p.R835C 0.46 deleterious(0) possibly_damaging(0.79) TCGA-W5-AA39-01 7 136700368 136700368 C T CHRM2 Silent p.D252D 0.48 TCGA-W5-AA39-01 7 138968747 138968747 G A UBN2 Silent p.S1032S 0.36 TCGA-W5-AA39-01 7 139757751 139757751 T G PARP12 Missense_Mutation p.Y137S 0.38 tolerated(0.44) benign(0.005) TCGA-W5-AA39-01 7 142749878 142749878 G A OR6V1 Nonsense_Mutation p.W147* 0.47 TCGA-W5-AA39-01 7 14613961 14613961 T G DGKB Missense_Mutation p.D550A 0.43 deleterious(0.01) possibly_damaging(0.758) TCGA-W5-AA39-01 7 150174406 150174406 G CGA GIMAP8 Frame_Shift_Ins p.E512Dfs*60 0.40 TCGA-W5-AA39-01 7 151072981 151072981 T A NUB1 Silent p.P505P 0.39 TCGA-W5-AA39-01 7 154795627 154795627 A G PAXIP1 5'Flank 0.30 TCGA-W5-AA39-01 7 155100871 155100871 A C INSIG1 3'UTR 0.38 TCGA-W5-AA39-01 7 156589175 156589175 G A LMBR1 Missense_Mutation p.L111F 0.39 tolerated(0.25) probably_damaging(0.997) TCGA-W5-AA39-01 7 156745289 156745289 A G NOM1 Missense_Mutation p.N370S 0.43 deleterious(0) probably_damaging(0.988) TCGA-W5-AA39-01 7 157208727 157208727 A G DNAJB6 Missense_Mutation p.K306E 0.41 tolerated(0.1) unknown(0) TCGA-W5-AA39-01 7 1587391 1587391 C T TMEM184A Silent p.K333K 0.47 TCGA-W5-AA39-01 7 21630880 21630880 G A DNAH11 Silent p.L784L 0.52 TCGA-W5-AA39-01 7 2567792 2567792 T G LFNG 3'UTR 0.36 TCGA-W5-AA39-01 7 2703869 2703869 A T TTYH3 3'UTR 0.41 TCGA-W5-AA39-01 7 27187127 27187127 G C HOXA6 Missense_Mutation p.S81C 0.37 deleterious(0.01) possibly_damaging(0.79) TCGA-W5-AA39-01 7 27870340 27870340 A G JAZF1 3'UTR 0.36 TCGA-W5-AA39-01 7 2977638 2977638 A G CARD11 Missense_Mutation p.L349P 0.31 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 7 34193505 34193505 A C BMPER 3'UTR 0.38 TCGA-W5-AA39-01 7 38860830 38860830 A - VPS41 Frame_Shift_Del p.H120Tfs*18 0.32 TCGA-W5-AA39-01 7 41729636 41729636 C T INHBA Missense_Mutation p.R298Q 0.64 tolerated(0.13) possibly_damaging(0.611) TCGA-W5-AA39-01 7 45124486 45124486 G T NACAD Silent p.A431A 0.36 TCGA-W5-AA39-01 7 48315409 48315409 G T ABCA13 Missense_Mutation p.S2049I 0.21 benign(0.073) TCGA-W5-AA39-01 7 48443439 48443439 G A ABCA13 Silent p.R4011R 0.42 TCGA-W5-AA39-01 7 5632703 5632703 T C FSCN1 Missense_Mutation p.W46R 0.39 deleterious(0.04) probably_damaging(1) TCGA-W5-AA39-01 7 65425890 65425890 A G GUSB Silent p.F650F 0.51 TCGA-W5-AA39-01 7 65425957 65425973 TTCCAGTATCTCTCTCG - GUSB Frame_Shift_Del p.R623Dfs*4 0.44 TCGA-W5-AA39-01 7 66270137 66270137 A C KCTD7 Missense_Mutation p.E277D 0.26 tolerated(0.11) benign(0.251) TCGA-W5-AA39-01 7 66461866 66461876 CGCTAACGCGG - TYW1 5'UTR 0.46 TCGA-W5-AA39-01 7 73020090 73020114 CGACGTAGGCTGGAGGCAGCAGTGG - MLXIPL Splice_Site p.X274_splice 0.32 TCGA-W5-AA39-01 7 73114216 73114216 C T STX1A 3'UTR 0.26 TCGA-W5-AA39-01 7 73661064 73661064 T G RFC2 Missense_Mutation p.K121T 0.50 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 7 7476074 7476074 C G COL28A1 Silent p.G604G 0.42 TCGA-W5-AA39-01 7 87856269 87856269 A C SRI 5'UTR 0.38 TCGA-W5-AA39-01 7 92078113 92078113 A T GATAD1 Missense_Mutation p.K99N 0.37 tolerated(0.06) probably_damaging(0.971) TCGA-W5-AA39-01 7 93073026 93073026 G A CALCR Missense_Mutation p.A265V 0.39 deleterious(0.04) possibly_damaging(0.705) TCGA-W5-AA39-01 7 95213058 95213058 A G PDK4 3'UTR 0.26 TCGA-W5-AA39-01 7 98605997 98605997 C T TRRAP Intron 0.64 TCGA-W5-AA39-01 7 99247744 99247744 T C CYP3A5 Silent p.L455L 0.09 TCGA-W5-AA39-01 7 99247827 99247829 GAT A CYP3A5 Frame_Shift_Del p.D427Vfs*41 0.29 TCGA-W5-AA39-01 8 103299709 103299709 T C UBR5 Missense_Mutation p.S1637G 0.32 tolerated(0.09) probably_damaging(0.914) TCGA-W5-AA39-01 8 103299714 103299714 T G UBR5 Missense_Mutation p.N1635T 0.33 tolerated(0.17) probably_damaging(0.968) TCGA-W5-AA39-01 8 104426976 104426991 GAGAGGATGCAGCCCG - DCAF13 5'UTR 0.21 TCGA-W5-AA39-01 8 11704585 11704585 A C CTSB Missense_Mutation p.S257A 0.30 tolerated(0.8) benign(0.007) TCGA-W5-AA39-01 8 117767993 117767993 G T EIF3H Missense_Mutation p.S15Y 0.39 deleterious_low_confidence(0.05) possibly_damaging(0.608) TCGA-W5-AA39-01 8 117767994 117767994 A T EIF3H Missense_Mutation p.S15T 0.38 tolerated_low_confidence(0.77) benign(0.153) TCGA-W5-AA39-01 8 117859650 117859650 G A RAD21 3'UTR 0.42 TCGA-W5-AA39-01 8 120754808 120754808 G C TAF2 Silent p.P1101P 0.19 TCGA-W5-AA39-01 8 123965153 123965153 A C ZHX2 Missense_Mutation p.E468A 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-W5-AA39-01 8 125110056 125110056 T G FER1L6 Silent p.T1605T 0.42 TCGA-W5-AA39-01 8 12880760 12880760 A T KIAA1456 3'UTR 0.49 TCGA-W5-AA39-01 8 12943006 12943006 T C DLC1 3'UTR 0.41 TCGA-W5-AA39-01 8 133858086 133858086 T C PHF20L1 Missense_Mutation p.L991S 0.39 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 8 139815133 139815133 C T COL22A1 Silent p.K513K 0.46 TCGA-W5-AA39-01 8 141415702 141415702 T A TRAPPC9 Nonsense_Mutation p.K426* 0.43 TCGA-W5-AA39-01 8 141669627 141669627 T G PTK2 Missense_Mutation p.N1046H 0.43 deleterious(0) probably_damaging(1) TCGA-W5-AA39-01 8 144450431 144450431 A C RHPN1 5'Flank 0.34 TCGA-W5-AA39-01 8 144462004 144462004 A G RHPN1 Silent p.A317A 0.53 TCGA-W5-AA39-01 8 145028036 145028037 - G PLEC 5'Flank 0.41 TCGA-W5-AA39-01 8 145059959 145059959 A C PARP10 Silent p.P122P 0.19 TCGA-W5-AA39-01 8 145151139 145151139 G T CYC1 Nonsense_Mutation p.E147* 0.37 TCGA-W5-AA39-01 8 145162333 145162333 G A MAF1 3'UTR 0.58 TCGA-W5-AA39-01 8 145541987 145541987 A C DGAT1 Missense_Mutation p.F205V 0.28 deleterious(0) possibly_damaging(0.758) TCGA-W5-AA39-01 8 145618578 145618578 G A CPSF1 Silent p.I1429I 0.31 TCGA-W5-AA39-01 8 145725522 145725522 T A PPP1R16A Missense_Mutation p.Y174N 0.33 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 8 146277985 146277985 T C C8orf33 Missense_Mutation p.L7P 0.36 tolerated_low_confidence(1) unknown(0) TCGA-W5-AA39-01 8 17510965 17510965 T C MTUS1 Missense_Mutation p.D1086G 0.43 deleterious(0.02) benign(0.085) TCGA-W5-AA39-01 8 18662106 18662106 T G PSD3 Missense_Mutation p.E612D 0.35 tolerated(0.43) benign(0.173) TCGA-W5-AA39-01 8 19700398 19700398 T C INTS10 Missense_Mutation p.I560T 0.45 deleterious(0) possibly_damaging(0.545) TCGA-W5-AA39-01 8 22960538 22960569 CCTACCGTTAGGGAACTCTGGGGACAGAGCGC - TNFRSF10C 5'UTR 0.29 TCGA-W5-AA39-01 8 23003411 23003411 A G TNFRSF10D Missense_Mutation p.V169A 0.33 tolerated(0.69) probably_damaging(0.963) TCGA-W5-AA39-01 8 23198669 23198669 T G LOXL2 Silent p.S193S 0.39 TCGA-W5-AA39-01 8 26906407 26906407 T C MIR548H4 RNA 0.47 TCGA-W5-AA39-01 8 2886950 2886950 A C CSMD1 Silent p.A2582A 0.44 TCGA-W5-AA39-01 8 30013852 30013852 C G DCTN6 5'UTR 0.27 TCGA-W5-AA39-01 8 33371011 33371011 A G TTI2 5'UTR 0.54 TCGA-W5-AA39-01 8 35544140 35544140 A T UNC5D Missense_Mutation p.T333S 0.48 tolerated(1) benign(0.026) TCGA-W5-AA39-01 8 38205356 38205356 A G WHSC1L1 Missense_Mutation p.Y112H 0.41 tolerated_low_confidence(0.11) possibly_damaging(0.862) TCGA-W5-AA39-01 8 53568653 53568653 G A RB1CC1 Silent p.L1246L 0.45 TCGA-W5-AA39-01 8 56015559 56015559 T G XKR4 Missense_Mutation p.F171V 0.38 deleterious(0.01) probably_damaging(0.988) TCGA-W5-AA39-01 8 56015562 56015562 A T XKR4 Missense_Mutation p.S172C 0.43 deleterious(0) possibly_damaging(0.873) TCGA-W5-AA39-01 8 57228891 57228891 G A SDR16C5 Nonsense_Mutation p.Q6* 0.43 TCGA-W5-AA39-01 8 57228892 57228892 C A SDR16C5 Silent p.L5L 0.43 TCGA-W5-AA39-01 8 71495450 71495450 C A TRAM1 Missense_Mutation p.V334L 0.43 tolerated(0.34) benign(0.002) TCGA-W5-AA39-01 8 75765829 75765829 T C PI15 3'UTR 0.40 TCGA-W5-AA39-01 8 82588479 82588479 A T IMPA1 Missense_Mutation p.V172E 0.39 deleterious(0) probably_damaging(0.972) TCGA-W5-AA39-01 8 87060845 87060845 G A PSKH2 Missense_Mutation p.A335V 0.10 tolerated(0.3) benign(0.001) TCGA-W5-AA39-01 8 87454934 87454934 A G WWP1 Missense_Mutation p.Q642R 0.44 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 9 100433498 100433498 A T NCBP1 3'UTR 0.41 TCGA-W5-AA39-01 9 111798539 111798539 A G TMEM245 Silent p.F782F 0.30 TCGA-W5-AA39-01 9 112168774 112168774 G A PTPN3 Missense_Mutation p.S587L 0.39 deleterious(0) benign(0.347) TCGA-W5-AA39-01 9 112963453 112963453 C A C9orf152 Missense_Mutation p.M165I 0.43 tolerated(0.16) benign(0.004) TCGA-W5-AA39-01 9 113205826 113205826 A T SVEP1 Silent p.P1546P 0.22 TCGA-W5-AA39-01 9 114695366 114695366 G C UGCG 3'UTR 0.49 TCGA-W5-AA39-01 9 115598546 115598546 A G SNX30 Missense_Mutation p.E224G 0.43 tolerated(0.08) probably_damaging(0.994) TCGA-W5-AA39-01 9 116356551 116356551 A G RGS3 Intron 0.46 TCGA-W5-AA39-01 9 116840382 116840382 A G AMBP Silent p.N36N 0.41 TCGA-W5-AA39-01 9 117086362 117086362 A G ORM1 Missense_Mutation p.R108G 0.33 deleterious(0.02) benign(0.245) TCGA-W5-AA39-01 9 117359886 117359886 G A ATP6V1G1 Missense_Mutation p.E74K 0.32 tolerated(0.06) benign(0.256) TCGA-W5-AA39-01 9 123937475 123937475 A T CNTRL Silent p.T2309T 0.31 TCGA-W5-AA39-01 9 125760961 125760961 C G RABGAP1 Silent p.V430V 0.36 TCGA-W5-AA39-01 9 125797792 125797792 A G GPR21 Missense_Mutation p.K316R 0.40 tolerated(0.33) benign(0.049) TCGA-W5-AA39-01 9 125836700 125836700 T C RABGAP1 Missense_Mutation p.L749S 0.39 deleterious(0) possibly_damaging(0.616) TCGA-W5-AA39-01 9 125873860 125873860 A C MIR600HG RNA 0.43 TCGA-W5-AA39-01 9 126414328 126414328 T A DENND1A Missense_Mutation p.E194D 0.30 deleterious(0) probably_damaging(0.999) TCGA-W5-AA39-01 9 12708981 12708981 G T TYRP1 Silent p.R471R 0.59 TCGA-W5-AA39-01 9 127113221 127113221 A G NEK6 Missense_Mutation p.T347A 0.50 deleterious_low_confidence(0.02) benign(0.075) TCGA-W5-AA39-01 9 127113447 127113447 T G NEK6 3'UTR 0.33 TCGA-W5-AA39-01 9 129645150 129645150 C T ZBTB34 3'UTR 0.09 TCGA-W5-AA39-01 9 130098404 130098404 C G GARNL3 Intron 0.49 TCGA-W5-AA39-01 9 130213671 130213671 C G RPL12 5'UTR 0.39 TCGA-W5-AA39-01 9 130869958 130869958 A C SLC25A25 3'UTR 0.38 TCGA-W5-AA39-01 9 131256884 131256884 A C ODF2 Missense_Mutation p.Q616H 0.27 deleterious(0.01) probably_damaging(0.916) TCGA-W5-AA39-01 9 131256904 131256904 A C ODF2 Missense_Mutation p.K623T 0.38 deleterious(0) possibly_damaging(0.796) TCGA-W5-AA39-01 9 13175817 13175837 GCATGACACACTCAGCATTAC - MPDZ In_Frame_Del p.C990_L997delinsF 0.29 TCGA-W5-AA39-01 9 13176276 13176276 A G MPDZ Silent p.T930T 0.50 TCGA-W5-AA39-01 9 131864315 131864315 G T CRAT Missense_Mutation p.H218N 0.44 tolerated(1) benign(0.003) TCGA-W5-AA39-01 9 13190124 13190124 A C MPDZ Missense_Mutation p.L715V 0.41 tolerated(0.06) probably_damaging(0.979) TCGA-W5-AA39-01 9 133557985 133557985 C T PRDM12 3'UTR 0.41 TCGA-W5-AA39-01 9 135204542 135204542 A C SETX Missense_Mutation p.L815V 0.50 tolerated_low_confidence(0.51) benign(0.003) TCGA-W5-AA39-01 9 137650127 137650127 C T COL5A1 Silent p.G640G 0.69 TCGA-W5-AA39-01 9 139620610 139620610 T C FAM69B 3'Flank 0.48 TCGA-W5-AA39-01 9 139734973 139734973 A C RABL6 Nonstop_Mutation p.*731Sext*97 0.56 TCGA-W5-AA39-01 9 139848199 139848199 A G LCN12 Missense_Mutation p.Q100R 0.14 tolerated(0.06) benign(0.216) TCGA-W5-AA39-01 9 140195345 140195345 G A NRARP 3'UTR 0.26 TCGA-W5-AA39-01 9 17273829 17273829 A C CNTLN Missense_Mutation p.E316D 0.21 deleterious(0.02) benign(0.057) TCGA-W5-AA39-01 9 17273832 17273832 T C CNTLN Silent p.L317L 0.22 TCGA-W5-AA39-01 9 19316816 19316816 G T DENND4C Missense_Mutation p.D596Y 0.46 deleterious(0.01) probably_damaging(0.994) TCGA-W5-AA39-01 9 23690361 23690361 A G ELAVL2 3'UTR 0.30 TCGA-W5-AA39-01 9 33927945 33927945 A C UBAP2 Missense_Mutation p.F741V 0.38 tolerated(0.3) unknown(0) TCGA-W5-AA39-01 9 34500833 34500833 T C DNAI1 Missense_Mutation p.C339R 0.31 deleterious(0.03) benign(0.036) TCGA-W5-AA39-01 9 35042287 35042287 G - C9orf131 Frame_Shift_Del p.D14Ifs*9 0.35 TCGA-W5-AA39-01 9 35792667 35792667 A G NPR2 Missense_Mutation p.K88E 0.28 tolerated(0.08) benign(0.201) TCGA-W5-AA39-01 9 36091179 36091179 T G RECK Silent p.L308L 0.52 TCGA-W5-AA39-01 9 37438480 37438480 C T ZBTB5 3'UTR 0.38 TCGA-W5-AA39-01 9 4841229 4841229 C A RCL1 Intron 0.29 TCGA-W5-AA39-01 9 6254494 6254494 A C IL33 Missense_Mutation p.T185P 0.50 deleterious(0.02) benign(0.112) TCGA-W5-AA39-01 9 74526743 74526743 G A C9orf85 Silent p.V31V 0.47 TCGA-W5-AA39-01 9 80335609 80335609 T G GNAQ 3'UTR 0.29 TCGA-W5-AA39-01 9 82188691 82188691 C G TLE4 Missense_Mutation p.Q45E 0.34 deleterious(0) benign(0.03) TCGA-W5-AA39-01 9 90255340 90255340 A G DAPK1 Missense_Mutation p.R253G 0.44 tolerated(0.26) benign(0.016) TCGA-W5-AA39-01 9 95005505 95005505 C A IARS Missense_Mutation p.R998L 0.50 deleterious(0) possibly_damaging(0.836) TCGA-W5-AA39-01 9 95277473 95277473 A G ECM2 Missense_Mutation p.L165P 0.58 tolerated(0.28) benign(0) TCGA-W5-AA39-01 X 11155858 11155858 A C ARHGAP6 3'UTR 0.89 TCGA-W5-AA39-01 X 114346319 114346319 A C LRCH2 3'UTR 0.85 TCGA-W5-AA39-01 X 123200253 123200253 A C STAG2 Missense_Mutation p.Q744H 0.94 tolerated(0.24) benign(0.005) TCGA-W5-AA39-01 X 123805577 123805577 T G TENM1 Missense_Mutation p.Y375S 0.85 tolerated(0.49) benign(0.32) TCGA-W5-AA39-01 X 135730392 135730392 T C CD40LG 5'UTR 0.91 TCGA-W5-AA39-01 X 147030738 147030738 T C FMR1 3'UTR 0.56 TCGA-W5-AA39-01 X 153213169 153213169 A G HCFC1 3'UTR 1.00 TCGA-W5-AA39-01 X 17750984 17750984 T C NHS 3'UTR 0.89 TCGA-W5-AA39-01 X 20183169 20183169 T C RPS6KA3 Missense_Mutation p.R538G 0.85 deleterious(0) benign(0.271) TCGA-W5-AA39-01 X 2876371 2876371 C G ARSE Silent p.L43L 0.93 TCGA-W5-AA39-01 X 37653034 37653034 T G CYBB Missense_Mutation p.Y152D 0.79 deleterious(0) benign(0.035) TCGA-W5-AA39-01 X 39921601 39921601 A G BCOR Missense_Mutation p.Y1407H 0.81 tolerated(0.49) possibly_damaging(0.571) TCGA-W5-AA39-01 X 41193432 41193432 G A DDX3X 5'UTR 0.93 TCGA-W5-AA39-01 X 47918881 47918881 T G ZNF630 Missense_Mutation p.K317T 0.91 deleterious(0) probably_damaging(0.997) TCGA-W5-AA39-01 X 51644872 51644872 C A MAGED1 Missense_Mutation p.S784Y 0.96 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-W5-AA39-01 X 55479371 55479371 T G MAGEH1 Silent p.S188S 0.93 TCGA-W6-AA0S-01 10 104180767 104180767 C T FBXL15 5'UTR 0.38 TCGA-W6-AA0S-01 11 102100578 102100578 G T YAP1 Silent p.L474L 0.23 TCGA-W6-AA0S-01 11 111942424 111942424 G A PIH1D2 Missense_Mutation p.P79L 0.32 deleterious(0.03) probably_damaging(0.94) TCGA-W6-AA0S-01 11 112070469 112070469 G A BCO2 Missense_Mutation p.G262R 0.32 tolerated(0.1) possibly_damaging(0.71) TCGA-W6-AA0S-01 11 11969496 11969496 G C USP47 Missense_Mutation p.L964F 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-W6-AA0S-01 11 20473693 20473693 T G PRMT3 Missense_Mutation p.F337L 0.06 benign(0.131) TCGA-W6-AA0S-01 11 56949739 56949739 G A LRRC55 Silent p.P124P 0.26 TCGA-W6-AA0S-01 12 107371419 107371420 CT - MTERFD3 Frame_Shift_Del p.E358Vfs*2 0.27 TCGA-W6-AA0S-01 12 23757376 23757376 G A SOX5 Missense_Mutation p.S370F 0.42 tolerated(0.28) possibly_damaging(0.73) TCGA-W6-AA0S-01 12 26755323 26755323 G A ITPR2 Silent p.L1220L 0.30 TCGA-W6-AA0S-01 12 26755371 26755371 G A ITPR2 Nonsense_Mutation p.Q1204* 0.26 TCGA-W6-AA0S-01 12 26755405 26755405 G A ITPR2 Silent p.L1192L 0.19 TCGA-W6-AA0S-01 12 26755574 26755574 G C ITPR2 Missense_Mutation p.S1176R 0.19 deleterious(0.05) possibly_damaging(0.531) TCGA-W6-AA0S-01 12 26755635 26755635 G C ITPR2 Nonsense_Mutation p.S1156* 0.30 TCGA-W6-AA0S-01 12 52761237 52761237 C T KRT85 5'UTR 0.39 TCGA-W6-AA0S-01 14 20010207 20010207 C T POTEM Silent p.S317S 0.19 TCGA-W6-AA0S-01 15 43818646 43818646 G A MAP1A Missense_Mutation p.E1659K 0.29 benign(0.056) TCGA-W6-AA0S-01 15 48494066 48494066 G T CTXN2 3'UTR 0.27 TCGA-W6-AA0S-01 15 52252121 52252121 G A LEO1 Missense_Mutation p.P379S 0.32 tolerated(0.15) probably_damaging(0.973) TCGA-W6-AA0S-01 15 65312553 65312553 T C MTFMT Missense_Mutation p.M235V 0.45 tolerated(0.09) benign(0) TCGA-W6-AA0S-01 15 90631838 90631838 C T IDH2 Missense_Mutation p.R172K 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-W6-AA0S-01 16 30749940 30749940 G - SRCAP Frame_Shift_Del p.R2862Gfs*24 0.22 TCGA-W6-AA0S-01 17 27071215 27071215 G A TRAF4 Missense_Mutation p.V29M 0.60 deleterious(0) probably_damaging(1) TCGA-W6-AA0S-01 17 44841868 44841868 G A WNT3 3'UTR 0.37 TCGA-W6-AA0S-01 17 46136201 46136212 CTTCTTCCTCTG - NFE2L1 In_Frame_Del p.A514_S517del 0.48 TCGA-W6-AA0S-01 17 48913377 48913377 G T WFIKKN2 Missense_Mutation p.G27W 0.32 deleterious(0.04) benign(0.435) TCGA-W6-AA0S-01 17 8024266 8024266 G A HES7 3'UTR 0.55 TCGA-W6-AA0S-01 19 43864434 43864434 C T CD177 3'UTR 0.68 TCGA-W6-AA0S-01 1 116383046 116383046 T C NHLH2 5'UTR 0.40 TCGA-W6-AA0S-01 1 12835030 12835030 C A PRAMEF12 Missense_Mutation p.P7H 0.59 deleterious(0.01) probably_damaging(0.996) TCGA-W6-AA0S-01 1 152659372 152659372 C T LCE2B Missense_Mutation p.P18L 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-W6-AA0S-01 1 183514431 183514431 A G SMG7 Missense_Mutation p.H739R 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-W6-AA0S-01 1 197383018 197383018 C A CRB1 Intron 0.40 TCGA-W6-AA0S-01 1 201456013 201456013 T C CSRP1 Intron 0.25 TCGA-W6-AA0S-01 1 234742878 234742878 A G IRF2BP2 3'UTR 0.28 TCGA-W6-AA0S-01 21 11049582 11049582 C T BAGE2 RNA 0.06 TCGA-W6-AA0S-01 21 14417481 14417481 C G RNU6-614P 5'Flank 0.22 TCGA-W6-AA0S-01 21 15745951 15745952 - T HSPA13 Frame_Shift_Ins p.T468Nfs*18 0.28 TCGA-W6-AA0S-01 22 30064437 30064437 T G NF2 Splice_Site p.X333_splice 0.27 TCGA-W6-AA0S-01 2 114195344 114195344 G T CBWD2 5'UTR 0.38 TCGA-W6-AA0S-01 2 141660609 141660609 C G LRP1B Missense_Mutation p.D1216H 0.33 possibly_damaging(0.861) TCGA-W6-AA0S-01 2 220413885 220413885 C T TMEM198 Missense_Mutation p.R252W 0.31 deleterious(0) possibly_damaging(0.689) TCGA-W6-AA0S-01 2 231256872 231256873 - G SP140L Frame_Shift_Ins p.Y347Lfs*29 0.34 TCGA-W6-AA0S-01 2 65309725 65309725 C T CEP68 Silent p.H720H 0.60 TCGA-W6-AA0S-01 3 167023497 167023497 G T ZBBX Silent p.S553S 0.44 TCGA-W6-AA0S-01 3 173999084 173999084 C A NLGN1 Silent p.T821T 0.26 TCGA-W6-AA0S-01 5 140783658 140783658 G C PCDHGA9 Missense_Mutation p.G380A 0.31 tolerated_low_confidence(0.07) possibly_damaging(0.899) TCGA-W6-AA0S-01 5 147029994 147029994 G C JAKMIP2 Silent p.L248L 0.44 TCGA-W6-AA0S-01 5 147040819 147040819 G A JAKMIP2 Missense_Mutation p.R107C 0.31 deleterious(0) possibly_damaging(0.534) TCGA-W6-AA0S-01 6 112450203 112450203 G T LAMA4 Missense_Mutation p.P1403H 0.54 deleterious(0) probably_damaging(0.999) TCGA-W6-AA0S-01 6 32945611 32945612 - C BRD2 Frame_Shift_Ins p.G472Wfs*12 0.43 TCGA-W6-AA0S-01 7 100279197 100279197 T A GIGYF1 3'UTR 0.06 TCGA-W6-AA0S-01 7 151962255 151962255 C T KMT2C Missense_Mutation p.G351E 0.06 probably_damaging(1) TCGA-W6-AA0S-01 7 97487633 97487633 G T ASNS Missense_Mutation p.A287E 0.15 deleterious(0) possibly_damaging(0.772) TCGA-W6-AA0S-01 9 13222402 13222402 C T MPDZ Missense_Mutation p.G193R 0.32 deleterious(0.03) probably_damaging(1) TCGA-W6-AA0S-01 9 98242716 98242716 C T PTCH1 Missense_Mutation p.D301N 0.42 deleterious(0.01) possibly_damaging(0.754) TCGA-W6-AA0S-01 X 49851058 49851058 G A CLCN5 Missense_Mutation p.R363H 0.43 deleterious(0) probably_damaging(0.999) TCGA-W6-AA0S-01 X 50085219 50085219 C T CCNB3 Missense_Mutation p.H1179Y 0.29 deleterious(0) probably_damaging(1) TCGA-WD-A7RX-01 10 1052974 1052974 T G GTPBP4 Missense_Mutation p.L340W 0.16 deleterious(0) probably_damaging(0.999) TCGA-WD-A7RX-01 10 106118238 106118238 T C CCDC147 Missense_Mutation p.M50T 0.07 deleterious(0) benign(0.113) TCGA-WD-A7RX-01 10 114578237 114578237 A C VTI1A 3'UTR 0.27 TCGA-WD-A7RX-01 10 68857749 68857749 T A LRRTM3 3'UTR 0.25 TCGA-WD-A7RX-01 11 72548099 72548099 G A FCHSD2 3'Flank 0.33 TCGA-WD-A7RX-01 11 72548431 72548431 G A FCHSD2 3'Flank 0.27 TCGA-WD-A7RX-01 11 72548432 72548432 A T FCHSD2 3'Flank 0.28 TCGA-WD-A7RX-01 11 72548438 72548438 A T FCHSD2 3'Flank 0.26 TCGA-WD-A7RX-01 11 72549571 72549571 G T FCHSD2 3'UTR 0.56 TCGA-WD-A7RX-01 12 120582444 120582444 T C GCN1L1 Missense_Mutation p.K1784R 0.35 probably_damaging(0.934) TCGA-WD-A7RX-01 13 50275983 50275983 T C KPNA3 Missense_Mutation p.N507D 0.30 tolerated(0.47) benign(0.01) TCGA-WD-A7RX-01 14 36192384 36192384 C T RALGAPA1 Silent p.S651S 0.05 TCGA-WD-A7RX-01 14 52520801 52520801 A G NID2 Silent p.L336L 0.09 TCGA-WD-A7RX-01 14 77978585 77978585 C T SPTLC2 3'UTR 0.19 TCGA-WD-A7RX-01 15 50550626 50550626 G A HDC Missense_Mutation p.A98V 0.07 deleterious(0) probably_damaging(0.994) TCGA-WD-A7RX-01 15 86312955 86312955 C T KLHL25 Silent p.P29P 0.23 TCGA-WD-A7RX-01 16 1488640 1488640 T C CCDC154 Silent p.L344L 0.28 TCGA-WD-A7RX-01 16 4796983 4796983 C T C16orf71 Silent p.L413L 0.09 TCGA-WD-A7RX-01 16 56977770 56977770 A G HERPUD1 3'UTR 0.28 TCGA-WD-A7RX-01 16 72174346 72174346 C T PMFBP1 Missense_Mutation p.E258K 0.19 tolerated(0.11) possibly_damaging(0.894) TCGA-WD-A7RX-01 17 7369566 7369566 C T ZBTB4 Nonsense_Mutation p.W185* 0.21 TCGA-WD-A7RX-01 18 34205526 34205526 G T FHOD3 Missense_Mutation p.G337V 0.28 tolerated(0.12) probably_damaging(0.956) TCGA-WD-A7RX-01 19 11727950 11727950 G A ZNF627 Missense_Mutation p.R211H 0.21 tolerated(0.12) possibly_damaging(0.805) TCGA-WD-A7RX-01 19 14266967 14266967 C T LPHN1 Missense_Mutation p.S1032N 0.10 tolerated(0.13) benign(0.006) TCGA-WD-A7RX-01 19 23328817 23328817 C A ZNF730 Missense_Mutation p.S324Y 0.23 tolerated(0.29) benign(0.369) TCGA-WD-A7RX-01 19 36352740 36352740 G T KIRREL2 Missense_Mutation p.G442W 0.31 deleterious(0) probably_damaging(0.999) TCGA-WD-A7RX-01 1 104160125 104160125 A T AMY2A Silent p.T21T 0.05 TCGA-WD-A7RX-01 1 142713765 142713765 T C RP11-417J8.6 RNA 0.03 TCGA-WD-A7RX-01 1 163039019 163039019 C G RGS4 Intron 0.40 TCGA-WD-A7RX-01 1 17316709 17316709 G A ATP13A2 Silent p.I775I 0.09 TCGA-WD-A7RX-01 1 27101387 27101394 CCCTCTGC - ARID1A Frame_Shift_Del p.S1558Cfs*11 0.28 TCGA-WD-A7RX-01 1 36819995 36819995 A C STK40 Missense_Mutation p.L198R 0.25 deleterious(0) probably_damaging(1) TCGA-WD-A7RX-01 20 3214919 3214919 G T SLC4A11 Missense_Mutation p.H154Q 0.40 tolerated(0.12) benign(0.328) TCGA-WD-A7RX-01 20 60768516 60768516 G A MTG2 Missense_Mutation p.V14M 0.20 tolerated_low_confidence(0.38) benign(0.005) TCGA-WD-A7RX-01 2 210742794 210742794 G A UNC80 Silent p.E1321E 0.15 TCGA-WD-A7RX-01 3 114014670 114014670 C T TIGIT Missense_Mutation p.P114S 0.30 deleterious(0) probably_damaging(0.999) TCGA-WD-A7RX-01 3 16633636 16633636 A G DAZL Missense_Mutation p.I272T 0.04 tolerated(0.1) benign(0.083) TCGA-WD-A7RX-01 3 170928989 170928989 C A TNIK Missense_Mutation p.K74N 0.23 deleterious(0.01) unknown(0) TCGA-WD-A7RX-01 4 119259352 119259352 A G PRSS12 Missense_Mutation p.I207T 0.33 deleterious(0.03) benign(0.03) TCGA-WD-A7RX-01 4 48037901 48037901 A T NIPAL1 Silent p.T315T 0.24 TCGA-WD-A7RX-01 5 121758570 121758570 C A SNCAIP Missense_Mutation p.S46R 0.25 deleterious(0.01) benign(0.282) TCGA-WD-A7RX-01 6 111621006 111621006 G - REV3L 3'UTR 0.23 TCGA-WD-A7RX-01 6 119345170 119345170 C T FAM184A Missense_Mutation p.C323Y 0.07 deleterious(0.02) possibly_damaging(0.891) TCGA-WD-A7RX-01 6 21598684 21598684 T C SOX4 3'UTR 0.26 TCGA-WD-A7RX-01 6 28213220 28213220 C T ZKSCAN4 Missense_Mutation p.G438S 0.22 deleterious(0) probably_damaging(0.966) TCGA-WD-A7RX-01 6 33164055 33164055 T A RXRB Intron 0.19 TCGA-WD-A7RX-01 6 38840868 38840868 G A DNAH8 Missense_Mutation p.R2258K 0.32 probably_damaging(0.999) TCGA-WD-A7RX-01 7 138768749 138768749 C T ZC3HAV1 Silent p.R158R 0.07 TCGA-WD-A7RX-01 8 10755264 10755264 C T XKR6 3'UTR 0.08 TCGA-WD-A7RX-01 8 110476496 110476496 C T PKHD1L1 Missense_Mutation p.H2479Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-WD-A7RX-01 8 74705369 74705369 A C UBE2W 3'UTR 0.07 TCGA-WD-A7RX-01 9 15468838 15468838 G T PSIP1 Silent p.R404R 0.33 TCGA-WD-A7RX-01 9 35650620 35650620 T C SIT1 Missense_Mutation p.T39A 0.35 tolerated(0.3) benign(0.003) TCGA-WD-A7RX-01 9 4286060 4286060 A G GLIS3 Silent p.P122P 0.05 TCGA-WD-A7RX-01 X 115304157 115304157 A T AGTR2 Silent p.S208S 0.09 TCGA-WD-A7RX-01 X 139586719 139586719 G A SOX3 Silent p.I169I 0.17 TCGA-WD-A7RX-01 X 14708892 14708892 G C GLRA2 Missense_Mutation p.A331P 0.17 deleterious(0) probably_damaging(0.992) TCGA-WD-A7RX-01 X 153040491 153040491 G A PLXNB3 Missense_Mutation p.C1386Y 0.19 deleterious(0) benign(0.062) TCGA-WD-A7RX-01 X 57934319 57934319 C G ZXDA 3'UTR 0.26 TCGA-YR-A95A-01 10 103587678 103587678 C T KCNIP2 Missense_Mutation p.A239T 0.20 tolerated(0.3) benign(0.277) TCGA-YR-A95A-01 10 114901068 114901068 C A TCF7L2 Silent p.P226P 0.38 TCGA-YR-A95A-01 10 32576188 32576188 A T EPC1 Missense_Mutation p.D330E 0.34 tolerated(1) benign(0.001) TCGA-YR-A95A-01 10 79576791 79576791 G A DLG5 Missense_Mutation p.P1283L 0.20 deleterious(0) probably_damaging(0.999) TCGA-YR-A95A-01 11 10597943 10597943 G A MRVI1 Missense_Mutation p.S892L 0.50 deleterious(0) probably_damaging(0.999) TCGA-YR-A95A-01 11 116691593 116691593 A C APOA4 Missense_Mutation p.L394W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-YR-A95A-01 12 54063070 54063070 C T ATP5G2 Missense_Mutation p.S115N 0.23 tolerated_low_confidence(0.1) possibly_damaging(0.528) TCGA-YR-A95A-01 12 56524868 56524868 A G ESYT1 Silent p.K204K 0.41 TCGA-YR-A95A-01 13 31491631 31491631 A - MEDAG Frame_Shift_Del p.D126Tfs*12 0.11 TCGA-YR-A95A-01 14 100800719 100800719 G A WARS 3'UTR 0.15 TCGA-YR-A95A-01 14 103969827 103969827 G A MARK3 3'UTR 0.50 TCGA-YR-A95A-01 14 19553567 19553567 G A POTEG Missense_Mutation p.D51N 0.09 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-YR-A95A-01 14 55510680 55510680 C T SOCS4 Silent p.T307T 0.44 TCGA-YR-A95A-01 14 90650699 90650699 C T KCNK13 Silent p.S193S 0.32 TCGA-YR-A95A-01 15 31233098 31233098 G A MTMR10 3'UTR 0.31 TCGA-YR-A95A-01 15 51766722 51766722 C T DMXL2 Silent p.L2344L 0.31 TCGA-YR-A95A-01 15 79750676 79750676 G A KIAA1024 Silent p.S729S 0.08 TCGA-YR-A95A-01 16 4802537 4802537 C T ZNF500 Missense_Mutation p.R428H 0.29 deleterious(0.01) probably_damaging(0.995) TCGA-YR-A95A-01 16 89804349 89804349 G A FANCA 3'UTR 0.30 TCGA-YR-A95A-01 18 12125725 12125725 C A ANKRD62 Silent p.L635L 0.33 TCGA-YR-A95A-01 18 67508983 67508983 G A DOK6 3'UTR 0.09 TCGA-YR-A95A-01 19 54664886 54664886 G C TMC4 Missense_Mutation p.L606V 0.42 tolerated(1) benign(0) TCGA-YR-A95A-01 19 56549497 56549497 G T NLRP5 Missense_Mutation p.D908Y 0.56 deleterious(0) probably_damaging(0.982) TCGA-YR-A95A-01 19 58596277 58596277 G A ZSCAN18 Silent p.G492G 0.38 TCGA-YR-A95A-01 19 7116568 7116568 C A INSR 3'Flank 0.28 TCGA-YR-A95A-01 1 155792141 155792141 C T GON4L Missense_Mutation p.R275H 0.08 deleterious(0) possibly_damaging(0.715) TCGA-YR-A95A-01 1 16475262 16475263 - T EPHA2 Frame_Shift_Ins p.I145Nfs*5 0.71 TCGA-YR-A95A-01 1 27101427 27101428 - T ARID1A Frame_Shift_Ins p.N1571* 0.43 TCGA-YR-A95A-01 1 89650997 89650997 A T GBP4 Silent p.T621T 0.39 TCGA-YR-A95A-01 22 24472130 24472130 C T CABIN1 Missense_Mutation p.T882M 0.12 tolerated(0.07) benign(0.003) TCGA-YR-A95A-01 22 43870630 43870630 G A MPPED1 Missense_Mutation p.E141K 0.33 tolerated(0.89) benign(0.069) TCGA-YR-A95A-01 2 101646196 101646196 C T TBC1D8 Missense_Mutation p.G645D 0.25 tolerated(0.74) benign(0.001) TCGA-YR-A95A-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.42 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-YR-A95A-01 2 70166683 70166683 A G MXD1 3'UTR 0.29 TCGA-YR-A95A-01 2 86831421 86831421 T C RNF103 Missense_Mutation p.T535A 0.50 tolerated(0.77) benign(0.003) TCGA-YR-A95A-01 3 128181874 128181874 C T DNAJB8 Missense_Mutation p.S72N 0.10 deleterious(0) benign(0.033) TCGA-YR-A95A-01 3 52727227 52727227 G T GNL3 Missense_Mutation p.G357C 0.22 deleterious(0) possibly_damaging(0.684) TCGA-YR-A95A-01 4 175158277 175158277 C A FBXO8 3'UTR 0.68 TCGA-YR-A95A-01 4 54424294 54424294 G A LNX1 Intron 0.62 TCGA-YR-A95A-01 6 26271507 26271507 C A HIST1H3G Missense_Mutation p.V36L 0.65 deleterious_low_confidence(0.04) benign(0) TCGA-YR-A95A-01 6 90638598 90638598 A T BACH2 3'UTR 0.07 TCGA-YR-A95A-01 7 44809060 44809060 C T ZMIZ2 3'UTR 0.21 TCGA-YR-A95A-01 8 11174173 11174173 T C MTMR9 Intron 0.14 TCGA-YR-A95A-01 8 55542175 55542175 T C RP1 Silent p.Y1911Y 0.38 TCGA-YR-A95A-01 9 139998403 139998403 G T MAN1B1 Intron 0.38 TCGA-YR-A95A-01 X 50659359 50659359 G T BMP15 Missense_Mutation p.A311S 0.78 deleterious(0) probably_damaging(0.998) TCGA-YR-A95A-01 X 68382847 68382847 A G PJA1 Missense_Mutation p.W79R 0.68 tolerated(0.6) benign(0.258) TCGA-YR-A95A-01 X 77529104 77529104 A G CYSLTR1 Missense_Mutation p.V47A 0.76 deleterious(0.03) benign(0.277) TCGA-ZD-A8I3-01 10 70645255 70645259 ACCCT - STOX1 Frame_Shift_Del p.P569Cfs*6 0.44 TCGA-ZD-A8I3-01 10 72025934 72025934 A T NPFFR1 Missense_Mutation p.M74K 0.33 deleterious(0) probably_damaging(0.999) TCGA-ZD-A8I3-01 10 72541754 72541754 C T TBATA Missense_Mutation p.R27H 0.10 tolerated_low_confidence(0.87) benign(0.001) TCGA-ZD-A8I3-01 11 5462013 5462013 C A OR51I1 Missense_Mutation p.M244I 0.43 tolerated(0.28) benign(0.003) TCGA-ZD-A8I3-01 11 62292529 62292529 C G AHNAK Missense_Mutation p.M3120I 0.34 benign(0.002) TCGA-ZD-A8I3-01 11 87032685 87032685 A G TMEM135 3'UTR 0.39 TCGA-ZD-A8I3-01 12 120172046 120172046 G A CIT Silent p.V1091V 0.23 TCGA-ZD-A8I3-01 12 51139481 51139481 G T DIP2B 3'UTR 0.33 TCGA-ZD-A8I3-01 12 57569279 57569279 A G LRP1 Missense_Mutation p.N1195S 0.19 probably_damaging(0.986) TCGA-ZD-A8I3-01 12 90028837 90028837 C T ATP2B1 Missense_Mutation p.G200S 0.28 tolerated(0.06) probably_damaging(1) TCGA-ZD-A8I3-01 13 24895265 24895265 C T C1QTNF9 Nonsense_Mutation p.Q121* 0.62 TCGA-ZD-A8I3-01 14 45584513 45584513 A T PRPF39 3'UTR 0.11 TCGA-ZD-A8I3-01 15 24927222 24927222 C T NPAP1 3'UTR 0.21 TCGA-ZD-A8I3-01 15 38643599 38643613 GACCCTATTAAAAGA AAAGC SPRED1 Frame_Shift_Del p.D357Kfs*46 0.26 TCGA-ZD-A8I3-01 15 38643613 38643613 A C SPRED1 Missense_Mutation p.R361S 0.33 tolerated(0.66) benign(0.133) TCGA-ZD-A8I3-01 16 16180684 16180684 G A ABCC1 Missense_Mutation p.V766M 0.22 deleterious(0) benign(0.281) TCGA-ZD-A8I3-01 16 28354442 28354442 T G NPIPB6 Missense_Mutation p.E255A 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-ZD-A8I3-01 16 53191285 53191285 A G CHD9 Silent p.S428S 0.23 TCGA-ZD-A8I3-01 16 66424338 66424338 C T CDH5 Missense_Mutation p.R272C 0.40 tolerated(0.1) probably_damaging(0.953) TCGA-ZD-A8I3-01 17 43912281 43912281 T C CRHR1 3'UTR 0.08 TCGA-ZD-A8I3-01 17 57288383 57288383 A C SMG8 Missense_Mutation p.N324T 0.38 deleterious(0.01) possibly_damaging(0.903) TCGA-ZD-A8I3-01 17 8732219 8732219 C T PIK3R6 Silent p.P326P 0.34 TCGA-ZD-A8I3-01 18 63489459 63489459 C T CDH7 Silent p.N256N 0.26 TCGA-ZD-A8I3-01 18 6997830 6997830 C G LAMA1 Missense_Mutation p.D1573H 0.44 tolerated(0.13) benign(0.128) TCGA-ZD-A8I3-01 19 35644952 35644952 G C FXYD7 3'UTR 0.56 TCGA-ZD-A8I3-01 1 111854340 111854340 G T CHIA Missense_Mutation p.G19C 0.35 deleterious(0.01) probably_damaging(1) TCGA-ZD-A8I3-01 1 235331898 235331898 A G ARID4B Missense_Mutation p.L1294S 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-ZD-A8I3-01 1 66713147 66713147 G C PDE4B Missense_Mutation p.D96H 0.23 deleterious(0) probably_damaging(0.954) TCGA-ZD-A8I3-01 20 23016852 23016852 C T SSTR4 Silent p.R244R 0.39 TCGA-ZD-A8I3-01 20 2968722 2968722 G A PTPRA Missense_Mutation p.R191H 0.34 tolerated(0.07) probably_damaging(0.998) TCGA-ZD-A8I3-01 20 39832988 39832988 A G ZHX3 Missense_Mutation p.M190T 0.43 deleterious(0) possibly_damaging(0.87) TCGA-ZD-A8I3-01 22 36960134 36960134 T C CACNG2 3'UTR 0.55 TCGA-ZD-A8I3-01 2 141812821 141812821 G C LRP1B Missense_Mutation p.S472R 0.31 possibly_damaging(0.485) TCGA-ZD-A8I3-01 2 229889936 229889936 C A PID1 3'UTR 0.45 TCGA-ZD-A8I3-01 2 85043205 85043218 CAGGTGAGGATGTT - DNAH6 Splice_Site p.X4124_splice 0.33 TCGA-ZD-A8I3-01 4 114271399 114271400 - A ANK2 Frame_Shift_Ins p.N1476Kfs*2 0.29 TCGA-ZD-A8I3-01 4 13339698 13339698 G T HSP90AB2P RNA 0.36 TCGA-ZD-A8I3-01 5 161580604 161580604 A T GABRG2 3'UTR 0.14 TCGA-ZD-A8I3-01 6 106991412 106991412 C G AIM1 Missense_Mutation p.A1252G 0.56 tolerated(0.29) benign(0.299) TCGA-ZD-A8I3-01 6 33289677 33289677 A T DAXX Missense_Mutation p.V9E 0.53 deleterious(0) probably_damaging(0.998) TCGA-ZD-A8I3-01 6 35479510 35479510 G A TULP1 Silent p.Y88Y 0.31 TCGA-ZD-A8I3-01 6 51890257 51890257 G C PKHD1 Missense_Mutation p.P1451A 0.30 tolerated(0.5) possibly_damaging(0.515) TCGA-ZD-A8I3-01 6 5545474 5545474 C T FARS2 Silent p.I322I 0.41 TCGA-ZD-A8I3-01 7 27146446 27146446 G A HOXA3 3'UTR 0.43 TCGA-ZD-A8I3-01 8 22547432 22547432 G A EGR3 3'UTR 0.07 TCGA-ZD-A8I3-01 8 2976042 2976042 G C CSMD1 Nonsense_Mutation p.Y2103* 0.19 TCGA-ZD-A8I3-01 8 54852270 54852270 T A RGS20 Nonsense_Mutation p.C215* 0.33 TCGA-ZD-A8I3-01 9 21971108 21971108 C A CDKN2A Missense_Mutation p.D84Y 0.58 deleterious(0) probably_damaging(1) TCGA-ZD-A8I3-01 X 134986716 134986716 C T SAGE1 Missense_Mutation p.P101S 0.21 tolerated(0.11) probably_damaging(0.999) TCGA-ZD-A8I3-01 X 14936834 14936834 C A MOSPD2 Missense_Mutation p.P450Q 0.20 tolerated(0.07) benign(0.179) TCGA-ZD-A8I3-01 X 153667150 153667150 T C GDI1 Missense_Mutation p.S65P 0.18 tolerated(0.14) benign(0.033) TCGA-ZD-A8I3-01 X 47006836 47006836 C T RBM10 5'UTR 0.12 TCGA-ZD-A8I3-01 X 72674415 72674415 C T CDX4 Silent p.S283S 0.08 TCGA-ZH-A8Y1-01 10 124594545 124594545 G A CUZD1 Silent p.I353I 0.38 TCGA-ZH-A8Y1-01 10 129913724 129913724 G T MKI67 Missense_Mutation p.N316K 0.47 tolerated(0.14) benign(0.006) TCGA-ZH-A8Y1-01 10 54040674 54040674 G A PRKG1 Missense_Mutation p.R510Q 0.10 tolerated(0.48) benign(0.016) TCGA-ZH-A8Y1-01 10 6527117 6527117 T C PRKCQ Missense_Mutation p.R339G 0.05 tolerated(0.26) benign(0.013) TCGA-ZH-A8Y1-01 11 10597537 10597537 C T MRVI1 3'UTR 0.19 TCGA-ZH-A8Y1-01 11 126139308 126139308 G T FOXRED1 Intron 0.50 TCGA-ZH-A8Y1-01 11 1269861 1269861 A G MUC5B Silent p.T3917T 0.40 TCGA-ZH-A8Y1-01 11 55595251 55595251 G A OR5L2 Missense_Mutation p.S186N 0.41 tolerated(0.06) benign(0.032) TCGA-ZH-A8Y1-01 11 57100235 57100235 C A SSRP1 Missense_Mutation p.R211L 0.42 deleterious(0) probably_damaging(0.999) TCGA-ZH-A8Y1-01 11 62655849 62655849 T C SLC3A2 Missense_Mutation p.L527P 0.34 deleterious(0) probably_damaging(1) TCGA-ZH-A8Y1-01 11 75113481 75113481 C T RPS3 Missense_Mutation p.A130V 0.10 tolerated(0.06) benign(0.225) TCGA-ZH-A8Y1-01 12 15475598 15475598 G A PTPRO 5'UTR 0.11 TCGA-ZH-A8Y1-01 12 49222482 49222482 C G CACNB3 3'UTR 0.36 TCGA-ZH-A8Y1-01 14 89625806 89625806 G A FOXN3 3'UTR 0.34 TCGA-ZH-A8Y1-01 15 54305275 54305275 T A UNC13C Missense_Mutation p.F59I 0.33 tolerated_low_confidence(0.07) benign(0) TCGA-ZH-A8Y1-01 16 20843488 20843488 T C AC004381.6 Missense_Mutation p.L390P 0.11 deleterious(0) probably_damaging(0.954) TCGA-ZH-A8Y1-01 16 57762447 57762447 A T CCDC135 Missense_Mutation p.K781M 0.68 deleterious(0) probably_damaging(1) TCGA-ZH-A8Y1-01 17 19319066 19319066 A G RNF112 Missense_Mutation p.T492A 0.31 deleterious(0.05) benign(0.338) TCGA-ZH-A8Y1-01 17 22023580 22023580 G A MTRNR2L1 3'UTR 0.28 TCGA-ZH-A8Y1-01 18 60562326 60562326 G C PHLPP1 Missense_Mutation p.A717P 0.62 deleterious(0) possibly_damaging(0.794) TCGA-ZH-A8Y1-01 19 11594920 11594920 G C ZNF653 Missense_Mutation p.S536C 0.39 deleterious(0) probably_damaging(0.999) TCGA-ZH-A8Y1-01 19 12865559 12865559 G C BEST2 Silent p.V147V 0.36 TCGA-ZH-A8Y1-01 19 37367894 37367894 A T ZNF345 Missense_Mutation p.R54S 0.33 tolerated(0.1) benign(0.1) TCGA-ZH-A8Y1-01 19 42489123 42489123 G C ATP1A3 Missense_Mutation p.L327V 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-ZH-A8Y1-01 19 51918507 51918507 C T SIGLEC10 Missense_Mutation p.E420K 0.07 tolerated(0.06) possibly_damaging(0.499) TCGA-ZH-A8Y1-01 1 100614470 100614470 T G LRRC39 3'UTR 0.40 TCGA-ZH-A8Y1-01 1 114520024 114520024 C T HIPK1 3'UTR 0.37 TCGA-ZH-A8Y1-01 1 151313386 151313386 G T RFX5 3'UTR 0.25 TCGA-ZH-A8Y1-01 1 200635799 200635799 T C DDX59 Missense_Mutation p.I24V 0.48 tolerated_low_confidence(0.26) benign(0.02) TCGA-ZH-A8Y1-01 1 232941560 232941560 C A MAP10 Missense_Mutation p.P264H 0.24 deleterious(0) probably_damaging(0.988) TCGA-ZH-A8Y1-01 1 240370270 240370270 G T FMN2 Missense_Mutation p.D720Y 0.24 unknown(0) TCGA-ZH-A8Y1-01 1 44437356 44437356 G T DPH2 Missense_Mutation p.G261V 0.30 tolerated(0.07) benign(0.101) TCGA-ZH-A8Y1-01 22 19455397 19455397 C T UFD1L Missense_Mutation p.V141I 0.35 deleterious(0) possibly_damaging(0.89) TCGA-ZH-A8Y1-01 2 113831950 113831950 A G IL1F10 Missense_Mutation p.Q26R 0.26 deleterious(0.03) benign(0.002) TCGA-ZH-A8Y1-01 2 127821523 127821523 C T BIN1 Silent p.P228P 0.23 TCGA-ZH-A8Y1-01 2 152659132 152659132 T A ARL5A 3'UTR 0.11 TCGA-ZH-A8Y1-01 2 158157491 158157491 A G GALNT5 Missense_Mutation p.I807V 0.55 tolerated(0.51) benign(0.002) TCGA-ZH-A8Y1-01 2 196759763 196759763 T C DNAH7 Silent p.P1611P 0.08 TCGA-ZH-A8Y1-01 2 23862089 23862089 G A KLHL29 Silent p.Q122Q 0.40 TCGA-ZH-A8Y1-01 2 32613960 32613960 T C BIRC6 Missense_Mutation p.L263S 0.33 benign(0.38) TCGA-ZH-A8Y1-01 2 97911242 97911242 G C ANKRD36 Missense_Mutation p.D1640H 0.16 deleterious(0) benign(0.109) TCGA-ZH-A8Y1-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.31 deleterious(0.02) probably_damaging(0.959) TCGA-ZH-A8Y1-01 3 52678790 52678790 T A PBRM1 Nonsense_Mutation p.K277* 0.56 TCGA-ZH-A8Y1-01 4 100125185 100125185 C T ADH6 3'UTR 0.48 TCGA-ZH-A8Y1-01 5 80724478 80724478 T C SSBP2 Missense_Mutation p.S328G 0.07 deleterious_low_confidence(0.04) possibly_damaging(0.595) TCGA-ZH-A8Y1-01 6 117663599 117663599 G A ROS1 Missense_Mutation p.P1545S 0.34 deleterious(0.01) benign(0.012) TCGA-ZH-A8Y1-01 6 160240039 160240039 G T PNLDC1 Missense_Mutation p.R429M 0.38 tolerated(0.08) possibly_damaging(0.599) TCGA-ZH-A8Y1-01 6 29431769 29431769 G C OR2H1 3'UTR 0.37 TCGA-ZH-A8Y1-01 7 100198331 100198331 G A FBXO24 Missense_Mutation p.A556T 0.47 tolerated_low_confidence(0.16) possibly_damaging(0.483) TCGA-ZH-A8Y1-01 7 151945667 151945668 - T KMT2C Frame_Shift_Ins p.Q618Tfs*4 0.25 TCGA-ZH-A8Y1-01 7 26237321 26237321 A G HNRNPA2B1 Missense_Mutation p.I25T 0.62 deleterious(0.03) probably_damaging(0.999) TCGA-ZH-A8Y1-01 7 95214322 95214322 C A PDK4 3'UTR 0.50 TCGA-ZH-A8Y1-01 8 12883168 12883168 A C KIAA1456 3'UTR 0.58 TCGA-ZH-A8Y1-01 8 182347 182347 G C ZNF596 5'Flank 0.33 TCGA-ZH-A8Y1-01 8 37996519 37996519 C A ASH2L Missense_Mutation p.T606N 0.33 deleterious(0.01) possibly_damaging(0.451) TCGA-ZH-A8Y1-01 9 139399225 139399225 C T NOTCH1 Missense_Mutation p.A1640T 0.12 tolerated(0.59) benign(0.002) TCGA-ZH-A8Y1-01 X 106959591 106959591 C T TSC22D3 Intron 0.05 TCGA-ZH-A8Y1-01 X 129168637 129168637 C T BCORL1 Intron 0.16 TCGA-ZH-A8Y1-01 X 133674225 133674225 A G MIR450B RNA 0.33 TCGA-ZH-A8Y1-01 X 135956307 135956307 T C RBMX Silent p.R390R 0.30 TCGA-ZH-A8Y1-01 X 31139888 31139888 C T DMD 3'UTR 0.23 TCGA-ZH-A8Y1-01 X 51639969 51639969 A G MAGED1 Silent p.L462L 0.34 TCGA-ZH-A8Y1-01 X 83723901 83723901 A C HDX Missense_Mutation p.I277S 0.09 deleterious(0.05) benign(0.135) TCGA-ZH-A8Y2-01 10 134940752 134940752 C A GPR123 Missense_Mutation p.S139R 0.46 tolerated(0.08) benign(0.383) TCGA-ZH-A8Y2-01 10 134980846 134980846 G T KNDC1 Intron 0.52 TCGA-ZH-A8Y2-01 10 50396360 50396360 G A C10orf128 Silent p.L8L 0.33 TCGA-ZH-A8Y2-01 10 71978550 71978550 T C PPA1 Silent p.E49E 0.17 TCGA-ZH-A8Y2-01 10 81143554 81143554 A T ZCCHC24 3'UTR 0.25 TCGA-ZH-A8Y2-01 11 108121693 108121693 C A ATM Missense_Mutation p.Q501K 0.65 deleterious(0) benign(0.146) TCGA-ZH-A8Y2-01 11 64597150 64597150 C T CDC42BPG Missense_Mutation p.E1254K 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-ZH-A8Y2-01 12 12940682 12940682 A G APOLD1 3'UTR 0.74 TCGA-ZH-A8Y2-01 12 132504692 132504692 C G EP400 Missense_Mutation p.S1459C 0.93 unknown(0) TCGA-ZH-A8Y2-01 12 133102390 133102396 CCCGGGA - FBRSL1 Frame_Shift_Del p.D189Sfs*97 0.16 TCGA-ZH-A8Y2-01 12 50482343 50482359 AAGTTCTCTTCCTTTTT - SMARCD1 Frame_Shift_Del p.K232* 0.74 TCGA-ZH-A8Y2-01 12 50869876 50869876 C T LARP4 3'UTR 0.07 TCGA-ZH-A8Y2-01 13 32753081 32753081 C A FRY Missense_Mutation p.P928T 0.26 tolerated(0.05) benign(0.313) TCGA-ZH-A8Y2-01 13 45957312 45957312 A C TPT1-AS1 RNA 0.14 TCGA-ZH-A8Y2-01 13 98652792 98652792 G A IPO5 Splice_Site p.X352_splice 0.26 TCGA-ZH-A8Y2-01 14 104471611 104471611 C T TDRD9 Missense_Mutation p.R528C 0.08 tolerated(0.05) benign(0.159) TCGA-ZH-A8Y2-01 14 94088818 94088818 C T UNC79 Nonsense_Mutation p.R1570* 0.86 TCGA-ZH-A8Y2-01 15 78820079 78820079 G A HYKK Intron 0.30 TCGA-ZH-A8Y2-01 15 99548770 99548770 T C PGPEP1L 5'UTR 0.62 TCGA-ZH-A8Y2-01 16 845949 845949 G A CHTF18 Silent p.V776V 0.37 TCGA-ZH-A8Y2-01 16 89805162 89805162 T C FANCA Intron 0.21 TCGA-ZH-A8Y2-01 17 29220847 29220847 T C ATAD5 Missense_Mutation p.L1659S 0.20 deleterious(0.03) probably_damaging(0.939) TCGA-ZH-A8Y2-01 17 43351847 43351847 G T MAP3K14 RNA 0.14 TCGA-ZH-A8Y2-01 17 62271115 62271115 C T TEX2 Silent p.P660P 0.05 TCGA-ZH-A8Y2-01 17 64873577 64873577 C T CACNG5 Missense_Mutation p.P43S 0.33 tolerated(0.32) benign(0.064) TCGA-ZH-A8Y2-01 17 68174467 68174468 AG - KCNJ2 3'UTR 0.28 TCGA-ZH-A8Y2-01 19 10157072 10157072 G A C3P1 RNA 0.50 TCGA-ZH-A8Y2-01 19 55672774 55672774 G A DNAAF3 Missense_Mutation p.H294Y 0.26 deleterious(0.05) possibly_damaging(0.844) TCGA-ZH-A8Y2-01 19 56888251 56888251 A C AC006116.24 RNA 0.35 TCGA-ZH-A8Y2-01 1 145601830 145601830 T C POLR3C Missense_Mutation p.Y234C 0.42 tolerated(0.06) possibly_damaging(0.562) TCGA-ZH-A8Y2-01 1 156713449 156713449 A T HDGF Missense_Mutation p.H253Q 0.19 tolerated_low_confidence(0.16) benign(0.027) TCGA-ZH-A8Y2-01 1 180080670 180080670 A G CEP350 3'UTR 0.18 TCGA-ZH-A8Y2-01 1 226923854 226923855 - C ITPKB Frame_Shift_Ins p.R436Afs*105 0.30 TCGA-ZH-A8Y2-01 1 44290442 44290442 C T ST3GAL3 Silent p.D98D 0.18 TCGA-ZH-A8Y2-01 1 57140104 57140107 AGAC - PRKAA2 Frame_Shift_Del p.Q50Rfs*5 0.16 TCGA-ZH-A8Y2-01 1 7811427 7811427 G A CAMTA1 Missense_Mutation p.A1620T 0.12 tolerated(0.12) probably_damaging(0.995) TCGA-ZH-A8Y2-01 1 87200770 87200770 C G SH3GLB1 Missense_Mutation p.H244Q 0.18 tolerated(0.05) probably_damaging(0.956) TCGA-ZH-A8Y2-01 21 47769730 47769730 T C PCNT Missense_Mutation p.L447P 0.64 benign(0.143) TCGA-ZH-A8Y2-01 22 21150447 21150447 C A PI4KA Missense_Mutation p.G755V 0.17 tolerated(0.13) benign(0.032) TCGA-ZH-A8Y2-01 22 35719501 35719501 G A TOM1 Missense_Mutation p.A127T 0.31 deleterious(0) probably_damaging(0.997) TCGA-ZH-A8Y2-01 22 41723243 41723243 A G ZC3H7B Missense_Mutation p.K107E 0.30 tolerated(0.31) benign(0.331) TCGA-ZH-A8Y2-01 2 152384096 152384096 C G NEB Missense_Mutation p.D7247H 0.19 probably_damaging(0.98) TCGA-ZH-A8Y2-01 2 176794915 176794915 T C KIAA1715 Missense_Mutation p.H356R 0.12 tolerated(0.39) benign(0) TCGA-ZH-A8Y2-01 2 176794918 176794918 T C KIAA1715 Missense_Mutation p.E355G 0.12 tolerated(0.19) benign(0.015) TCGA-ZH-A8Y2-01 2 178098799 178098799 T A NFE2L2 Missense_Mutation p.E82D 0.48 deleterious(0) probably_damaging(0.999) TCGA-ZH-A8Y2-01 2 179437209 179437209 T A TTN Missense_Mutation p.K24550N 0.21 TCGA-ZH-A8Y2-01 2 197138745 197138745 C T HECW2 Missense_Mutation p.A1080T 0.45 tolerated(0.08) benign(0.11) TCGA-ZH-A8Y2-01 3 143567100 143567100 A G SLC9A9 Missense_Mutation p.V22A 0.21 tolerated(0.39) benign(0.42) TCGA-ZH-A8Y2-01 3 52442599 52442599 A G BAP1 Missense_Mutation p.L49P 0.78 deleterious(0) probably_damaging(1) TCGA-ZH-A8Y2-01 5 115249278 115249278 G C AP3S1 3'UTR 0.17 TCGA-ZH-A8Y2-01 5 150175154 150175154 G A SMIM3 Missense_Mutation p.R51Q 0.47 tolerated_low_confidence(0.29) possibly_damaging(0.764) TCGA-ZH-A8Y2-01 5 176002399 176002399 C A CDHR2 Nonsense_Mutation p.S247* 0.41 TCGA-ZH-A8Y2-01 5 45267285 45267286 - G HCN1 Frame_Shift_Ins p.L564Tfs*21 0.43 TCGA-ZH-A8Y2-01 5 488540 488540 G T SLC9A3 Missense_Mutation p.A189E 0.23 deleterious(0) probably_damaging(0.961) TCGA-ZH-A8Y2-01 5 76128777 76128777 C T F2RL1 Silent p.A115A 0.31 TCGA-ZH-A8Y2-01 6 166580132 166580132 G A T Missense_Mutation p.P140L 0.28 deleterious(0) possibly_damaging(0.66) TCGA-ZH-A8Y2-01 6 30303613 30303613 G A TRIM39 Missense_Mutation p.R214Q 0.47 deleterious(0.01) benign(0.086) TCGA-ZH-A8Y2-01 6 32918505 32918505 G T HLA-DMA Missense_Mutation p.P55H 0.42 deleterious(0) probably_damaging(0.998) TCGA-ZH-A8Y2-01 6 3850817 3850817 G A FAM50B Missense_Mutation p.A258T 0.25 deleterious(0.03) possibly_damaging(0.841) TCGA-ZH-A8Y2-01 6 39278778 39278778 G A KCNK17 Silent p.V81V 0.14 TCGA-ZH-A8Y2-01 6 56918360 56918360 G C KIAA1586 Missense_Mutation p.V355L 0.43 tolerated(0.29) benign(0.002) TCGA-ZH-A8Y2-01 7 137150763 137150763 T C DGKI Missense_Mutation p.M843V 0.36 tolerated(0.1) benign(0.034) TCGA-ZH-A8Y2-01 7 21856201 21856201 C T DNAH11 Silent p.A3490A 0.42 TCGA-ZH-A8Y2-01 7 6006556 6006556 A G RSPH10B Silent p.V64V 0.13 TCGA-ZH-A8Y2-01 8 145739898 145739898 C T RECQL4 Silent p.L544L 0.48 TCGA-ZH-A8Y2-01 8 37594090 37594090 T C RP11-863K10.7 5'UTR 0.61 TCGA-ZH-A8Y2-01 9 114192870 114192870 A G KIAA0368 Missense_Mutation p.M474T 0.35 deleterious(0) benign(0.236) TCGA-ZH-A8Y2-01 X 136649399 136649399 G A ZIC3 Silent p.Q183Q 0.38 TCGA-ZH-A8Y2-01 X 144904919 144904919 C T SLITRK2 Missense_Mutation p.P326S 0.10 deleterious(0.01) possibly_damaging(0.489) TCGA-ZH-A8Y2-01 X 47426127 47426127 C T ARAF Missense_Mutation p.P216L 0.68 deleterious(0) possibly_damaging(0.646) TCGA-ZH-A8Y2-01 X 55102523 55102523 G A PAGE2B Missense_Mutation p.D17N 0.63 deleterious(0.05) possibly_damaging(0.631) TCGA-ZH-A8Y2-01 X 65476101 65476101 C T HEPH Missense_Mutation p.T996I 0.27 deleterious(0.05) benign(0.008) TCGA-ZH-A8Y2-01 X 69724329 69724329 C T DLG3 3'UTR 0.59 TCGA-ZH-A8Y4-01 10 126675054 126675054 T C ZRANB1 3'UTR 0.45 TCGA-ZH-A8Y4-01 11 1096456 1096456 G A MUC2 Missense_Mutation p.D2161N 0.14 unknown(0) TCGA-ZH-A8Y4-01 11 118416964 118416964 G A IFT46 Intron 0.50 TCGA-ZH-A8Y4-01 11 124266860 124266860 A G OR8B3 Silent p.L130L 0.60 TCGA-ZH-A8Y4-01 11 128682113 128682113 G T FLI1 3'UTR 0.17 TCGA-ZH-A8Y4-01 11 76751719 76751719 C T B3GNT6 Missense_Mutation p.A375V 0.38 tolerated(0.09) benign(0.017) TCGA-ZH-A8Y4-01 12 34180133 34180133 A C ALG10 3'UTR 0.28 TCGA-ZH-A8Y4-01 13 32870162 32870162 G T FRY 3'UTR 0.38 TCGA-ZH-A8Y4-01 13 84453551 84453551 C T SLITRK1 3'UTR 0.59 TCGA-ZH-A8Y4-01 14 51188275 51188275 G T NIN 3'Flank 0.83 TCGA-ZH-A8Y4-01 14 68275965 68275965 A G ZFYVE26 Silent p.L105L 0.80 TCGA-ZH-A8Y4-01 14 73576153 73576153 C T RBM25 Missense_Mutation p.R549C 0.75 possibly_damaging(0.689) TCGA-ZH-A8Y4-01 15 20643872 20643872 G A HERC2P3 RNA 0.27 TCGA-ZH-A8Y4-01 15 43873229 43873229 T C PPIP5K1 Silent p.K344K 0.17 TCGA-ZH-A8Y4-01 15 49030571 49030571 C A CEP152 Missense_Mutation p.D1670Y 0.22 deleterious(0) probably_damaging(0.98) TCGA-ZH-A8Y4-01 15 51397446 51397446 C - TNFAIP8L3 5'UTR 0.34 TCGA-ZH-A8Y4-01 16 50707593 50707593 G A SNX20 Silent p.A225A 0.62 TCGA-ZH-A8Y4-01 16 66562916 66562917 - A TK2 Frame_Shift_Ins p.V144Cfs*6 0.19 TCGA-ZH-A8Y4-01 17 36453189 36453189 A C MRPL45 Silent p.R14R 0.22 TCGA-ZH-A8Y4-01 17 72588674 72588674 G C C17orf77 Missense_Mutation p.L163F 0.24 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-ZH-A8Y4-01 18 51888024 51888024 C A C18orf54 Missense_Mutation p.L99I 0.28 tolerated(0.11) possibly_damaging(0.508) TCGA-ZH-A8Y4-01 18 72776395 72776396 AG - ZNF407 Frame_Shift_Del p.E2241Kfs*33 0.26 TCGA-ZH-A8Y4-01 18 77802202 77802202 A C RBFA Missense_Mutation p.N187H 0.23 tolerated(0.34) benign(0.019) TCGA-ZH-A8Y4-01 19 10468512 10468519 CCACTTGT - TYK2 Frame_Shift_Del p.D796Gfs*12 0.22 TCGA-ZH-A8Y4-01 19 1052002 1052002 G A ABCA7 Silent p.V1008V 0.38 TCGA-ZH-A8Y4-01 19 3778217 3778217 G A MATK Silent p.A497A 0.43 TCGA-ZH-A8Y4-01 19 41594843 41594843 C T CYP2A13 Missense_Mutation p.R64C 0.23 tolerated(0.06) benign(0.017) TCGA-ZH-A8Y4-01 19 44660536 44660536 C T ZNF234 Missense_Mutation p.R123W 0.35 deleterious(0.04) benign(0.394) TCGA-ZH-A8Y4-01 19 58549386 58549386 C T ZSCAN1 Missense_Mutation p.T61M 0.19 tolerated(0.08) benign(0.01) TCGA-ZH-A8Y4-01 1 104077437 104077437 T G RNPC3 Missense_Mutation p.L134R 0.50 tolerated(0.53) benign(0.025) TCGA-ZH-A8Y4-01 1 11897068 11897068 C G CLCN6 Missense_Mutation p.L665V 0.67 tolerated(0.36) benign(0.006) TCGA-ZH-A8Y4-01 1 12091889 12091889 G C MIIP 3'UTR 0.58 TCGA-ZH-A8Y4-01 1 155785816 155785816 C A GON4L Intron 0.12 TCGA-ZH-A8Y4-01 1 156147453 156147453 T C SEMA4A 3'UTR 0.06 TCGA-ZH-A8Y4-01 1 166963277 166963277 G A MAEL Missense_Mutation p.R165Q 0.13 deleterious(0.05) probably_damaging(0.973) TCGA-ZH-A8Y4-01 1 169102001 169102001 G T NME7 3'UTR 0.15 TCGA-ZH-A8Y4-01 1 169364131 169364131 T G CCDC181 3'Flank 0.37 TCGA-ZH-A8Y4-01 1 173628573 173628573 C A ANKRD45 Splice_Site 0.24 TCGA-ZH-A8Y4-01 1 211749440 211749445 AAAAGT - SLC30A1 In_Frame_Del p.Y270_F271del 0.45 TCGA-ZH-A8Y4-01 1 226419667 226419667 C T LIN9 3'UTR 0.12 TCGA-ZH-A8Y4-01 1 62237282 62237282 C A INADL Missense_Mutation p.T235K 0.44 tolerated(0.58) benign(0.059) TCGA-ZH-A8Y4-01 1 9640237 9640238 - A SLC25A33 Frame_Shift_Ins p.M237Nfs*8 0.35 TCGA-ZH-A8Y4-01 20 280500 280500 G A ZCCHC3 3'UTR 0.26 TCGA-ZH-A8Y4-01 20 56099137 56099137 C T CTCFL Missense_Mutation p.R42Q 0.26 tolerated(0.7) benign(0.001) TCGA-ZH-A8Y4-01 22 21044620 21044620 A G POM121L4P RNA 0.35 TCGA-ZH-A8Y4-01 22 30054251 30054251 C T NF2 Missense_Mutation p.R225W 0.08 deleterious(0.01) possibly_damaging(0.69) TCGA-ZH-A8Y4-01 22 37900277 37900277 T C CARD10 Missense_Mutation p.N517S 0.40 tolerated(0.16) possibly_damaging(0.64) TCGA-ZH-A8Y4-01 22 38049853 38049853 G A SH3BP1 Missense_Mutation p.A556T 0.64 tolerated(0.41) benign(0.01) TCGA-ZH-A8Y4-01 22 38084863 38084863 C A NOL12 Missense_Mutation p.A82E 0.29 tolerated(0.06) probably_damaging(0.928) TCGA-ZH-A8Y4-01 22 42526688 42526688 C A CYP2D6 Missense_Mutation p.G36C 0.17 deleterious(0) probably_damaging(1) TCGA-ZH-A8Y4-01 2 1668821 1668821 A G PXDN Silent p.P439P 0.22 TCGA-ZH-A8Y4-01 2 224856592 224856592 G A SERPINE2 Missense_Mutation p.R217C 0.17 deleterious(0) probably_damaging(0.988) TCGA-ZH-A8Y4-01 2 26512787 26512787 G A HADHB Missense_Mutation p.G464D 0.17 deleterious(0) probably_damaging(1) TCGA-ZH-A8Y4-01 2 50147980 50147980 C G NRXN1 3'UTR 0.16 TCGA-ZH-A8Y4-01 2 74779778 74779778 G A LOXL3 Intron 0.25 TCGA-ZH-A8Y4-01 3 101572374 101572374 G T NFKBIZ Missense_Mutation p.C335F 0.53 tolerated_low_confidence(0.11) benign(0.005) TCGA-ZH-A8Y4-01 3 108549621 108549621 C T TRAT1 Nonsense_Mutation p.R38* 0.11 TCGA-ZH-A8Y4-01 3 184091269 184091269 G A THPO Silent p.L110L 0.40 TCGA-ZH-A8Y4-01 3 46940168 46940168 C T PTH1R Missense_Mutation p.R219C 0.50 deleterious(0) probably_damaging(0.983) TCGA-ZH-A8Y4-01 3 47125234 47125235 - A SETD2 Frame_Shift_Ins p.L2013Pfs*20 0.39 TCGA-ZH-A8Y4-01 3 52437221 52437221 T - BAP1 Frame_Shift_Del p.D608Afs*9 0.47 TCGA-ZH-A8Y4-01 3 52662939 52662939 G A PBRM1 Nonsense_Mutation p.R472* 0.28 TCGA-ZH-A8Y4-01 3 53217486 53217486 A C PRKCD Missense_Mutation p.N226H 0.72 deleterious(0.03) benign(0.007) TCGA-ZH-A8Y4-01 4 20535338 20535338 T C SLIT2 Missense_Mutation p.L611S 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-ZH-A8Y4-01 4 4304317 4304317 G T ZBTB49 Missense_Mutation p.V252L 0.17 tolerated(0.23) benign(0.064) TCGA-ZH-A8Y4-01 4 74719786 74719786 G A PF4V1 Missense_Mutation p.D88N 0.78 tolerated(0.07) possibly_damaging(0.715) TCGA-ZH-A8Y4-01 5 140309209 140309215 ATAAGCA - PCDHAC1 Intron 0.38 TCGA-ZH-A8Y4-01 5 169145773 169145773 C T DOCK2 Missense_Mutation p.R749W 0.09 deleterious(0) probably_damaging(0.997) TCGA-ZH-A8Y4-01 5 71491937 71491937 G T MAP1B Nonsense_Mutation p.G919* 0.29 TCGA-ZH-A8Y4-01 6 28251597 28251597 G A PGBD1 Missense_Mutation p.E3K 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-ZH-A8Y4-01 6 39564011 39564011 C T KIF6 Missense_Mutation p.R222H 0.32 deleterious(0) probably_damaging(1) TCGA-ZH-A8Y4-01 7 114269938 114269949 CAGCAGCAACAA - FOXP2 In_Frame_Del p.Q213_Q216del 0.14 TCGA-ZH-A8Y4-01 7 132193245 132193245 G A PLXNA4 Missense_Mutation p.R70W 0.41 tolerated(0.09) benign(0.07) TCGA-ZH-A8Y4-01 7 138344614 138344614 C T SVOPL Silent p.S155S 0.14 TCGA-ZH-A8Y4-01 7 142511015 142511015 G A TRBV30 5'UTR 0.53 TCGA-ZH-A8Y4-01 7 143080207 143080207 A C ZYX Missense_Mutation p.K272T 0.35 tolerated(0.1) possibly_damaging(0.773) TCGA-ZH-A8Y4-01 7 148769283 148769283 T G ZNF786 Missense_Mutation p.E194A 0.41 deleterious(0.02) probably_damaging(0.917) TCGA-ZH-A8Y4-01 7 150389906 150389906 C T GIMAP2 Nonsense_Mutation p.R178* 0.07 TCGA-ZH-A8Y4-01 7 84625977 84625977 T A SEMA3D 3'UTR 0.37 TCGA-ZH-A8Y4-01 7 86416121 86416121 A G GRM3 Missense_Mutation p.Q338R 0.11 tolerated(0.63) benign(0.003) TCGA-ZH-A8Y4-01 7 91794552 91794552 T C LRRD1 5'UTR 0.30 TCGA-ZH-A8Y4-01 8 142505504 142505504 G T MROH5 Missense_Mutation p.N79K 0.40 tolerated(0.3) benign(0.157) TCGA-ZH-A8Y4-01 8 41788230 41788230 A G KAT6A 3'UTR 0.12 TCGA-ZH-A8Y4-01 8 54141665 54141665 G A OPRK1 3'UTR 0.42 TCGA-ZH-A8Y4-01 9 136216982 136216982 T C RPL7A Intron 0.38 TCGA-ZH-A8Y4-01 X 114357150 114357150 T C LRCH2 Silent p.A706A 0.35 TCGA-ZH-A8Y4-01 X 123234726 123234726 T - STAG2 3'UTR 0.13 TCGA-ZH-A8Y4-01 X 152936621 152936621 G A PNCK Silent p.Y296Y 0.18 TCGA-ZH-A8Y4-01 X 47426127 47426127 C T ARAF Missense_Mutation p.P216L 0.81 deleterious(0) possibly_damaging(0.646) TCGA-ZH-A8Y4-01 X 63409392 63409392 G A AMER1 3'UTR 0.16 TCGA-ZH-A8Y4-01 X 74494297 74494297 G A UPRT Missense_Mutation p.G70S 0.91 tolerated_low_confidence(0.4) benign(0.004) TCGA-ZH-A8Y5-01 10 135053262 135053262 C T VENTX Silent p.G108G 0.33 TCGA-ZH-A8Y5-01 11 129784863 129784863 G T PRDM10 Silent p.L863L 0.21 TCGA-ZH-A8Y5-01 11 134113055 134113055 G C VPS26B Silent p.L196L 0.26 TCGA-ZH-A8Y5-01 11 20448337 20448337 A G PRMT3 Missense_Mutation p.T307A 0.37 benign(0.008) TCGA-ZH-A8Y5-01 11 3661209 3661209 G T ART5 Nonsense_Mutation p.C150* 0.16 TCGA-ZH-A8Y5-01 11 69950201 69950201 A T ANO1 Missense_Mutation p.R213W 0.27 deleterious(0.01) probably_damaging(0.981) TCGA-ZH-A8Y5-01 11 94282736 94282736 G - FUT4 3'UTR 0.40 TCGA-ZH-A8Y5-01 12 93803735 93803736 TG - UBE2N 3'UTR 0.49 TCGA-ZH-A8Y5-01 13 25672271 25672271 C T PABPC3 3'UTR 0.39 TCGA-ZH-A8Y5-01 13 36048562 36048562 T G MAB21L1 3'UTR 0.45 TCGA-ZH-A8Y5-01 17 37822401 37822401 G A TCAP 3'UTR 0.09 TCGA-ZH-A8Y5-01 17 48684279 48684279 G A CACNA1G Missense_Mutation p.V1481I 0.27 deleterious(0) probably_damaging(0.989) TCGA-ZH-A8Y5-01 17 7606344 7606344 C T WRAP53 Silent p.S434S 0.13 TCGA-ZH-A8Y5-01 18 9254584 9254584 C G ANKRD12 Missense_Mutation p.S440C 0.77 deleterious_low_confidence(0.02) possibly_damaging(0.566) TCGA-ZH-A8Y5-01 19 32930122 32930122 A G DPY19L3 Missense_Mutation p.N234S 0.13 tolerated(0.06) benign(0.026) TCGA-ZH-A8Y5-01 19 35850647 35850647 C T FFAR3 Silent p.A285A 0.33 TCGA-ZH-A8Y5-01 19 36233568 36233568 C T U2AF1L4 Silent p.Q180Q 0.39 TCGA-ZH-A8Y5-01 19 49878126 49878126 C T DKKL1 Silent p.L190L 0.37 TCGA-ZH-A8Y5-01 19 51890594 51890594 C T LIM2 Missense_Mutation p.G35E 0.33 tolerated(0.1) probably_damaging(0.978) TCGA-ZH-A8Y5-01 19 52395140 52395140 T G ZNF649 Missense_Mutation p.K83N 0.09 tolerated(0.13) possibly_damaging(0.859) TCGA-ZH-A8Y5-01 1 150547050 150547051 - T MCL1 3'UTR 0.08 TCGA-ZH-A8Y5-01 1 158533186 158533186 T C OR6P1 Missense_Mutation p.E70G 0.54 deleterious(0) probably_damaging(0.99) TCGA-ZH-A8Y5-01 1 243668192 243668192 T C AKT3 3'UTR 0.18 TCGA-ZH-A8Y5-01 20 60887332 60887332 C A LAMA5 Missense_Mutation p.R3134L 0.33 benign(0.006) TCGA-ZH-A8Y5-01 21 44189140 44189140 G A PDE9A Missense_Mutation p.D489N 0.56 deleterious(0) probably_damaging(0.996) TCGA-ZH-A8Y5-01 2 242051786 242051786 G A PASK Silent p.I1141I 0.35 TCGA-ZH-A8Y5-01 2 242135132 242135132 G A ANO7 Missense_Mutation p.V115I 0.59 deleterious(0.01) probably_damaging(0.999) TCGA-ZH-A8Y5-01 3 101540335 101540335 G T NXPE3 Missense_Mutation p.R406L 0.42 deleterious(0) possibly_damaging(0.741) TCGA-ZH-A8Y5-01 3 145787515 145787515 A C PLOD2 3'UTR 0.06 TCGA-ZH-A8Y5-01 3 194168696 194168696 T C ATP13A3 Missense_Mutation p.Y398C 0.41 deleterious(0) probably_damaging(0.992) TCGA-ZH-A8Y5-01 3 19576259 19576261 AAA - KCNH8 3'UTR 0.24 TCGA-ZH-A8Y5-01 3 51449832 51449832 C G VPRBP Splice_Site p.X975_splice 0.71 TCGA-ZH-A8Y5-01 4 69403575 69403575 G A UGT2B17 Missense_Mutation p.P454L 0.81 deleterious(0.03) probably_damaging(0.912) TCGA-ZH-A8Y5-01 5 157213545 157213545 C T CLINT1 3'Flank 0.47 TCGA-ZH-A8Y5-01 6 106553700 106553700 C A PRDM1 Missense_Mutation p.N555K 0.76 tolerated(0.08) possibly_damaging(0.694) TCGA-ZH-A8Y5-01 6 167447400 167447400 G A FGFR1OP Missense_Mutation p.G356S 0.81 deleterious(0) probably_damaging(0.991) TCGA-ZH-A8Y5-01 6 2785858 2785858 A G WRNIP1 3'UTR 0.43 TCGA-ZH-A8Y5-01 8 10677706 10677706 G A PINX1 Silent p.P156P 0.89 TCGA-ZH-A8Y5-01 9 135786449 135786449 A C TSC1 Missense_Mutation p.S361A 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-ZH-A8Y5-01 9 84548161 84548161 C T RP11-383M4.6 Intron 0.43 TCGA-ZH-A8Y5-01 X 14547682 14547682 A G GLRA2 5'UTR 0.88 TCGA-ZH-A8Y5-01 X 92965546 92965546 A G FAM133A 3'UTR 0.84 TCGA-ZH-A8Y6-01 10 104121537 104121537 G A GBF1 Missense_Mutation p.M517I 0.32 tolerated(0.31) benign(0.232) TCGA-ZH-A8Y6-01 10 70206164 70206164 G A DNA2 Silent p.L402L 0.45 TCGA-ZH-A8Y6-01 10 90974598 90974598 C T LIPA Missense_Mutation p.R396K 0.06 tolerated(1) benign(0.005) TCGA-ZH-A8Y6-01 10 91177164 91177164 G A IFIT5 Missense_Mutation p.A70T 0.10 deleterious(0.01) probably_damaging(1) TCGA-ZH-A8Y6-01 11 18636621 18636621 C G SPTY2D1 Missense_Mutation p.Q400H 0.39 tolerated(0.32) benign(0.19) TCGA-ZH-A8Y6-01 11 46321678 46321678 C A CREB3L1 Missense_Mutation p.P99T 0.41 deleterious(0) probably_damaging(0.999) TCGA-ZH-A8Y6-01 11 71118801 71118801 G A AP002387.1 RNA 0.42 TCGA-ZH-A8Y6-01 11 95502123 95502123 G C FAM76B 3'UTR 0.35 TCGA-ZH-A8Y6-01 12 75436135 75436135 G A KCNC2 3'UTR 0.39 TCGA-ZH-A8Y6-01 13 30423676 30423676 C T UBL3 5'UTR 0.32 TCGA-ZH-A8Y6-01 13 47127344 47127344 C T LRCH1 5'Flank 0.58 TCGA-ZH-A8Y6-01 13 95131418 95131418 G A DCT Missense_Mutation p.T31M 0.60 deleterious(0) probably_damaging(0.999) TCGA-ZH-A8Y6-01 14 105181137 105181137 G T INF2 Missense_Mutation p.R1213L 0.27 tolerated_low_confidence(0.08) unknown(0) TCGA-ZH-A8Y6-01 14 23793663 23793663 G C PABPN1 Intron 0.44 TCGA-ZH-A8Y6-01 14 52978009 52978009 C T TXNDC16 Silent p.L235L 0.41 TCGA-ZH-A8Y6-01 14 61176294 61176294 G C SIX4 3'UTR 0.47 TCGA-ZH-A8Y6-01 15 88690583 88690583 C A NTRK3 Silent p.T149T 0.37 TCGA-ZH-A8Y6-01 16 48333669 48333669 C T LONP2 Missense_Mutation p.P544L 0.33 deleterious(0.04) possibly_damaging(0.816) TCGA-ZH-A8Y6-01 16 83998838 83998838 C A OSGIN1 Missense_Mutation p.F220L 0.44 tolerated(0.18) probably_damaging(0.969) TCGA-ZH-A8Y6-01 16 90036801 90036801 C T CENPBD1 3'UTR 0.40 TCGA-ZH-A8Y6-01 17 18023111 18023111 G A MYO15A Missense_Mutation p.E333K 0.42 benign(0.021) TCGA-ZH-A8Y6-01 17 38510560 38510560 C T RARA Missense_Mutation p.R272W 0.40 deleterious(0) probably_damaging(0.999) TCGA-ZH-A8Y6-01 17 42982463 42982463 C G FAM187A 3'UTR 0.54 TCGA-ZH-A8Y6-01 17 57232319 57232319 G T SKA2 Intron 0.43 TCGA-ZH-A8Y6-01 17 58148096 58148096 C T HEATR6 Missense_Mutation p.E258K 0.30 deleterious(0.02) benign(0.002) TCGA-ZH-A8Y6-01 17 72428130 72428130 G A GPRC5C 5'UTR 0.50 TCGA-ZH-A8Y6-01 17 73317898 73317898 C T GRB2 Missense_Mutation p.D104N 0.56 tolerated(0.53) benign(0.011) TCGA-ZH-A8Y6-01 17 78325495 78325495 A G RNF213 Missense_Mutation p.I3399V 0.43 benign(0.01) TCGA-ZH-A8Y6-01 18 7037680 7037680 G A LAMA1 Missense_Mutation p.A545V 0.08 tolerated(0.41) benign(0.001) TCGA-ZH-A8Y6-01 18 74680348 74680348 G A ZNF236 3'UTR 0.44 TCGA-ZH-A8Y6-01 19 33306507 33306507 G A TDRD12 Missense_Mutation p.E1099K 0.44 tolerated(0.1) possibly_damaging(0.728) TCGA-ZH-A8Y6-01 19 55237729 55237729 G A KIR3DL3 Missense_Mutation p.R94K 0.25 tolerated(0.21) possibly_damaging(0.836) TCGA-ZH-A8Y6-01 19 55247567 55247567 G A KIR3DL3 3'UTR 0.83 TCGA-ZH-A8Y6-01 19 58762767 58762767 G T ZNF544 Intron 0.44 TCGA-ZH-A8Y6-01 1 20672037 20672037 C A VWA5B1 Missense_Mutation p.D905E 0.33 deleterious(0.02) possibly_damaging(0.697) TCGA-ZH-A8Y6-01 1 233270846 233270846 G A PCNXL2 Silent p.F1250F 0.40 TCGA-ZH-A8Y6-01 1 237049616 237049616 C G MTR Missense_Mutation p.Q934E 0.35 tolerated(1) benign(0.001) TCGA-ZH-A8Y6-01 1 33328487 33328487 C T FNDC5 3'UTR 0.60 TCGA-ZH-A8Y6-01 1 6694732 6694732 C T DNAJC11 3'UTR 0.39 TCGA-ZH-A8Y6-01 1 8072519 8072519 G A ERRFI1 3'UTR 0.23 TCGA-ZH-A8Y6-01 1 92696936 92696936 C T C1orf146 Intron 0.33 TCGA-ZH-A8Y6-01 1 94650575 94650575 G A ARHGAP29 Silent p.V654V 0.43 TCGA-ZH-A8Y6-01 20 1532442 1532442 C G SIRPD Missense_Mutation p.E106Q 0.47 deleterious(0) possibly_damaging(0.901) TCGA-ZH-A8Y6-01 20 19956130 19956130 C T RIN2 Silent p.F536F 0.41 TCGA-ZH-A8Y6-01 20 34091510 34091510 C T CEP250 Silent p.L1771L 0.56 TCGA-ZH-A8Y6-01 21 27253701 27253701 C G APP 3'UTR 0.44 TCGA-ZH-A8Y6-01 22 17288751 17288751 G A XKR3 Silent p.I71I 0.34 TCGA-ZH-A8Y6-01 22 38203271 38203271 G A H1F0 3'UTR 0.43 TCGA-ZH-A8Y6-01 2 162807340 162807340 G A SLC4A10 Silent p.R841R 0.44 TCGA-ZH-A8Y6-01 2 165811791 165811791 C T SLC38A11 5'UTR 0.05 TCGA-ZH-A8Y6-01 2 179391365 179391365 T G TTN 3'UTR 0.21 TCGA-ZH-A8Y6-01 2 220413803 220413803 G T TMEM198 Intron 0.53 TCGA-ZH-A8Y6-01 2 220413845 220413845 G C TMEM198 Intron 0.50 TCGA-ZH-A8Y6-01 2 31010106 31010106 A T CAPN13 Missense_Mutation p.L29Q 0.09 deleterious(0) probably_damaging(1) TCGA-ZH-A8Y6-01 3 10268072 10268072 C T IRAK2 Silent p.L409L 0.50 TCGA-ZH-A8Y6-01 3 48625832 48625832 C T COL7A1 Missense_Mutation p.E865K 0.33 unknown(0) TCGA-ZH-A8Y6-01 3 57283498 57283498 T G APPL1 Missense_Mutation p.I325R 0.06 deleterious(0) benign(0.248) TCGA-ZH-A8Y6-01 3 58190532 58190532 C G DNASE1L3 Missense_Mutation p.E133Q 0.45 deleterious(0.02) probably_damaging(0.989) TCGA-ZH-A8Y6-01 4 2249993 2249993 G T MXD4 3'UTR 0.57 TCGA-ZH-A8Y6-01 4 2250041 2250041 G A MXD4 3'UTR 0.62 TCGA-ZH-A8Y6-01 4 2251087 2251087 G A MXD4 3'UTR 0.32 TCGA-ZH-A8Y6-01 4 83839757 83839757 T C THAP9 Missense_Mutation p.Y798H 0.35 tolerated(0.33) possibly_damaging(0.453) TCGA-ZH-A8Y6-01 5 150484839 150484839 G C ANXA6 Silent p.L602L 0.37 TCGA-ZH-A8Y6-01 5 156590618 156590618 G T FAM71B Missense_Mutation p.P220T 0.29 tolerated(0.41) benign(0.035) TCGA-ZH-A8Y6-01 5 176832069 176832069 C T F12 Missense_Mutation p.R172Q 0.22 tolerated(0.72) benign(0) TCGA-ZH-A8Y6-01 5 180277777 180277777 G C ZFP62 Missense_Mutation p.L240V 0.42 deleterious(0) probably_damaging(0.951) TCGA-ZH-A8Y6-01 6 18122100 18122100 G A NHLRC1 Silent p.F246F 0.23 TCGA-ZH-A8Y6-01 6 26892922 26892922 G A GUSBP2 RNA 0.35 TCGA-ZH-A8Y6-01 6 82458697 82458697 A C FAM46A 3'UTR 0.44 TCGA-ZH-A8Y6-01 6 83937111 83937111 C G ME1 Missense_Mutation p.L406F 0.43 deleterious(0) probably_damaging(1) TCGA-ZH-A8Y6-01 7 104719314 104719314 C T KMT2E Silent p.F384F 0.47 TCGA-ZH-A8Y6-01 7 1582550 1582550 C T MAFK 3'UTR 0.33 TCGA-ZH-A8Y6-01 7 158704268 158704268 C T WDR60 Silent p.L496L 0.39 TCGA-ZH-A8Y6-01 8 103564207 103564207 A G ODF1 Silent p.R84R 0.38 TCGA-ZH-A8Y6-01 8 53554933 53554933 C G RB1CC1 Missense_Mutation p.E1439Q 0.48 tolerated(0.05) benign(0.075) TCGA-ZH-A8Y6-01 8 57077131 57077131 A T PLAG1 3'UTR 0.04 TCGA-ZH-A8Y6-01 8 86019443 86019443 G A LRRCC1 5'UTR 0.21 TCGA-ZH-A8Y6-01 9 140732875 140732875 C T EHMT1 3'Flank 0.41 TCGA-ZH-A8Y6-01 9 35056804 35056804 G C VCP 3'UTR 0.37 TCGA-ZH-A8Y6-01 9 97367846 97367846 G C FBP1 Missense_Mutation p.P240A 0.41 tolerated(0.05) benign(0.004) TCGA-ZH-A8Y6-01 9 98782939 98782939 G A LINC00092 RNA 0.38 TCGA-ZH-A8Y6-01 X 103495187 103495187 C A ESX1 Missense_Mutation p.G315W 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-ZH-A8Y8-01 10 34671618 34671618 A C PARD3 Missense_Mutation p.S417A 0.14 tolerated(0.71) benign(0) TCGA-ZH-A8Y8-01 10 88230836 88230836 A C WAPAL Missense_Mutation p.C685W 0.17 deleterious(0) possibly_damaging(0.894) TCGA-ZH-A8Y8-01 11 107325251 107325251 T C CWF19L2 Silent p.K88K 0.26 TCGA-ZH-A8Y8-01 11 65089303 65089303 G A CDC42EP2 3'UTR 0.21 TCGA-ZH-A8Y8-01 11 65647690 65647690 G A CTSW Silent p.P35P 0.29 TCGA-ZH-A8Y8-01 11 8752429 8752429 C G ST5 Missense_Mutation p.Q136H 0.29 tolerated_low_confidence(0.16) benign(0.121) TCGA-ZH-A8Y8-01 11 94800575 94800575 T C SRSF8 Missense_Mutation p.F62S 0.10 deleterious_low_confidence(0.03) probably_damaging(0.949) TCGA-ZH-A8Y8-01 12 25380277 25380277 G T KRAS Missense_Mutation p.Q61K 0.19 deleterious(0.01) benign(0.279) TCGA-ZH-A8Y8-01 12 25380278 25380278 A T KRAS Silent p.G60G 0.19 TCGA-ZH-A8Y8-01 12 49360090 49360090 G A WNT10B Nonsense_Mutation p.R320* 0.20 TCGA-ZH-A8Y8-01 12 67706679 67706679 G C CAND1 3'UTR 0.17 TCGA-ZH-A8Y8-01 13 28589834 28589834 C T FLT3 Missense_Mutation p.R849H 0.37 deleterious(0) probably_damaging(0.999) TCGA-ZH-A8Y8-01 13 37271473 37271473 T A SERTM1 3'UTR 0.32 TCGA-ZH-A8Y8-01 15 43766909 43766910 - T TP53BP1 Frame_Shift_Ins p.I381Nfs*4 0.24 TCGA-ZH-A8Y8-01 17 7164180 7164180 G A CLDN7 Silent p.A116A 0.32 TCGA-ZH-A8Y8-01 17 77073889 77073889 G A ENGASE Missense_Mutation p.S120N 0.28 tolerated(0.06) possibly_damaging(0.566) TCGA-ZH-A8Y8-01 18 22669523 22669523 A T ZNF521 Nonsense_Mutation p.L1271* 0.16 TCGA-ZH-A8Y8-01 18 2884988 2884988 A T EMILIN2 Missense_Mutation p.Y95F 0.10 tolerated(0.06) benign(0.133) TCGA-ZH-A8Y8-01 19 10610426 10610426 G A KEAP1 Missense_Mutation p.A95V 0.21 tolerated(0.42) benign(0.402) TCGA-ZH-A8Y8-01 19 35450228 35450228 C T ZNF792 Silent p.R177R 0.18 TCGA-ZH-A8Y8-01 1 102290693 102290693 A G OLFM3 Missense_Mutation p.S161P 0.16 tolerated(0.07) benign(0.328) TCGA-ZH-A8Y8-01 1 203277597 203277597 T G BTG2 3'UTR 0.15 TCGA-ZH-A8Y8-01 1 92428423 92428423 G C BRDT Missense_Mutation p.V38L 0.17 deleterious(0) benign(0.127) TCGA-ZH-A8Y8-01 1 93619543 93619543 T G TMED5 3'UTR 0.14 TCGA-ZH-A8Y8-01 20 32298495 32298502 ACCGTGCC - PXMP4 Frame_Shift_Del p.A79Cfs*40 0.30 TCGA-ZH-A8Y8-01 20 33632325 33632325 G A TRPC4AP Missense_Mutation p.A283V 0.07 tolerated(1) benign(0.021) TCGA-ZH-A8Y8-01 2 233756101 233756101 G A NGEF Silent p.F413F 0.23 TCGA-ZH-A8Y8-01 2 238268788 238268788 C T COL6A3 Silent p.P2075P 0.20 TCGA-ZH-A8Y8-01 2 65305018 65305018 T C CEP68 Missense_Mutation p.I675T 0.26 deleterious(0) possibly_damaging(0.837) TCGA-ZH-A8Y8-01 4 174447794 174447794 C T HAND2 3'UTR 0.36 TCGA-ZH-A8Y8-01 4 2931570 2931570 G A ADD1 3'UTR 0.20 TCGA-ZH-A8Y8-01 4 71853825 71853825 T A MOB1B 3'UTR 0.05 TCGA-ZH-A8Y8-01 4 89443125 89443125 T C PYURF Missense_Mutation p.I87V 0.33 tolerated(0.19) benign(0.433) TCGA-ZH-A8Y8-01 5 122506475 122506475 C T PRDM6 Missense_Mutation p.T390M 0.20 tolerated(0.12) benign(0.008) TCGA-ZH-A8Y8-01 5 145610369 145610369 C G RBM27 Missense_Mutation p.H247D 0.30 deleterious(0.01) benign(0.143) TCGA-ZH-A8Y8-01 5 9063091 9063091 C T SEMA5A Missense_Mutation p.R809H 0.20 deleterious(0.01) probably_damaging(1) TCGA-ZH-A8Y8-01 6 157517340 157517340 C - ARID1B Frame_Shift_Del p.N1303Tfs*145 0.26 TCGA-ZH-A8Y8-01 7 158560431 158560435 ATATT - ESYT2 Frame_Shift_Del p.I327Kfs*16 0.14 TCGA-ZH-A8Y8-01 7 72396882 72396882 G A POM121 5'UTR 0.15 TCGA-ZH-A8Y8-01 7 87053267 87053267 C T ABCB4 Silent p.G722G 0.26 TCGA-ZH-A8Y8-01 8 113988300 113988300 C T CSMD3 Missense_Mutation p.V370I 0.17 tolerated(0.61) benign(0) TCGA-ZH-A8Y8-01 8 145162360 145162360 C A MAF1 3'UTR 0.17 TCGA-ZH-A8Y8-01 8 41120919 41120919 A T SFRP1 3'UTR 0.55 TCGA-ZH-A8Y8-01 8 42403821 42403821 A C SMIM19 Missense_Mutation p.I53L 0.16 tolerated(0.08) benign(0.28) TCGA-ZH-A8Y8-01 9 86592623 86592623 C T HNRNPK Missense_Mutation p.R46H 0.16 tolerated(0.07) benign(0.008) TCGA-ZH-A8Y8-01 X 148770619 148770619 A G MAGEA11 5'UTR 0.35 TCGA-ZU-A8S4-01 10 62648582 62648582 G C RHOBTB1 Missense_Mutation p.R282G 0.11 deleterious(0) possibly_damaging(0.477) TCGA-ZU-A8S4-01 10 64567454 64567454 T C ADO 3'UTR 0.08 TCGA-ZU-A8S4-01 10 88950443 88950443 C T FAM35A 3'UTR 0.11 TCGA-ZU-A8S4-01 11 47236765 47236765 T G DDB2 Missense_Mutation p.S26R 0.11 tolerated(0.22) benign(0.007) TCGA-ZU-A8S4-01 11 57184113 57184113 T C SLC43A3 Silent p.E234E 0.18 TCGA-ZU-A8S4-01 12 133780814 133780814 A G ZNF268 Missense_Mutation p.K848E 0.13 tolerated(0.07) possibly_damaging(0.743) TCGA-ZU-A8S4-01 12 31266007 31266007 C G RP11-551L14.1 RNA 0.07 TCGA-ZU-A8S4-01 12 52200419 52200419 C T SCN8A Missense_Mutation p.R1717C 0.17 deleterious(0) possibly_damaging(0.67) TCGA-ZU-A8S4-01 12 56335859 56335859 A C DGKA Missense_Mutation p.E443A 0.07 tolerated(0.08) benign(0.43) TCGA-ZU-A8S4-01 12 67700164 67700164 C T CAND1 Nonsense_Mutation p.Q906* 0.17 TCGA-ZU-A8S4-01 13 38357312 38357312 C G TRPC4 Missense_Mutation p.E53D 0.12 deleterious(0.04) benign(0.279) TCGA-ZU-A8S4-01 13 39433640 39433640 G T FREM2 Missense_Mutation p.V2478L 0.16 tolerated(0.08) possibly_damaging(0.556) TCGA-ZU-A8S4-01 14 70634323 70634323 T G SLC8A3 Missense_Mutation p.I273L 0.08 tolerated(0.19) benign(0.002) TCGA-ZU-A8S4-01 15 45725249 45725249 A G C15orf48 3'UTR 0.09 TCGA-ZU-A8S4-01 15 73889442 73889442 G A NPTN Silent p.N120N 0.20 TCGA-ZU-A8S4-01 16 49823430 49823430 G A ZNF423 Missense_Mutation p.S15L 0.13 tolerated_low_confidence(0.29) benign(0) TCGA-ZU-A8S4-01 16 51173869 51173869 A C SALL1 Missense_Mutation p.V755G 0.08 deleterious(0) probably_damaging(0.996) TCGA-ZU-A8S4-01 17 43923030 43923030 C T SPPL2C Missense_Mutation p.P253L 0.21 deleterious(0.05) benign(0.044) TCGA-ZU-A8S4-01 17 56699023 56699023 C T TEX14 Missense_Mutation p.G181D 0.10 deleterious(0.01) possibly_damaging(0.616) TCGA-ZU-A8S4-01 18 10797478 10797478 T A PIEZO2 Missense_Mutation p.E474V 0.10 tolerated(0.08) benign(0.004) TCGA-ZU-A8S4-01 18 12096211 12096211 T G ANKRD62 Missense_Mutation p.L175R 0.12 deleterious(0) probably_damaging(0.995) TCGA-ZU-A8S4-01 18 67742716 67742716 G A RTTN Missense_Mutation p.A1479V 0.14 deleterious(0.04) possibly_damaging(0.663) TCGA-ZU-A8S4-01 18 6873450 6873450 G C ARHGAP28 Missense_Mutation p.G174R 0.12 deleterious(0.03) benign(0.049) TCGA-ZU-A8S4-01 19 1065137 1065137 G A ABCA7 Silent p.E2084E 0.17 TCGA-ZU-A8S4-01 19 49878312 49878312 G A DKKL1 3'UTR 0.12 TCGA-ZU-A8S4-01 19 56467443 56467443 C T NLRP8 Silent p.S673S 0.09 TCGA-ZU-A8S4-01 1 151339353 151339353 G A SELENBP1 Missense_Mutation p.T170M 0.09 deleterious(0) probably_damaging(0.988) TCGA-ZU-A8S4-01 1 160186489 160186489 G A DCAF8 3'UTR 0.10 TCGA-ZU-A8S4-01 1 248202088 248202088 C T OR2L2 Silent p.I173I 0.07 TCGA-ZU-A8S4-01 1 27105848 27105852 ATGAT - ARID1A Frame_Shift_Del p.N1820Tfs*9 0.17 TCGA-ZU-A8S4-01 1 44877854 44877854 G A RNF220 Missense_Mutation p.A29T 0.10 deleterious(0) probably_damaging(0.996) TCGA-ZU-A8S4-01 1 89886775 89886775 C T GBP1P1 Intron 0.10 TCGA-ZU-A8S4-01 1 99774783 99774783 T A LPPR4 3'UTR 0.13 TCGA-ZU-A8S4-01 20 24524207 24524207 G C SYNDIG1 Missense_Mutation p.E158D 0.08 tolerated(0.24) benign(0.059) TCGA-ZU-A8S4-01 21 43279219 43279219 T G PRDM15 Silent p.R384R 0.07 TCGA-ZU-A8S4-01 22 38463728 38463728 C T PICK1 Silent p.H100H 0.09 TCGA-ZU-A8S4-01 2 120620118 120620118 G C PTPN4 Missense_Mutation p.D49H 0.11 deleterious(0.02) benign(0.014) TCGA-ZU-A8S4-01 2 120861693 120861693 C T EPB41L5 Intron 0.15 TCGA-ZU-A8S4-01 2 128861520 128861520 A C UGGT1 Missense_Mutation p.E70A 0.12 deleterious(0) possibly_damaging(0.715) TCGA-ZU-A8S4-01 2 165476280 165476280 G T GRB14 Missense_Mutation p.P81T 0.23 deleterious(0.01) probably_damaging(0.959) TCGA-ZU-A8S4-01 2 179454980 179454980 C T TTN Missense_Mutation p.G20491D 0.05 TCGA-ZU-A8S4-01 2 186661056 186661056 C A FSIP2 Missense_Mutation p.Q3154K 0.10 benign(0.015) TCGA-ZU-A8S4-01 2 220329177 220329177 C T SPEG Missense_Mutation p.R910C 0.11 probably_damaging(0.997) TCGA-ZU-A8S4-01 2 227660543 227660543 C T IRS1 Missense_Mutation p.G971E 0.14 tolerated(0.12) probably_damaging(0.98) TCGA-ZU-A8S4-01 2 29274737 29274737 C T FAM179A Silent p.S946S 0.10 TCGA-ZU-A8S4-01 2 73682297 73682297 A C ALMS1 Missense_Mutation p.M2516L 0.13 benign(0.001) TCGA-ZU-A8S4-01 3 108361320 108361320 C G DZIP3 Missense_Mutation p.T367S 0.04 deleterious_low_confidence(0.01) benign(0.025) TCGA-ZU-A8S4-01 3 136471127 136471127 C A STAG1 5'UTR 0.10 TCGA-ZU-A8S4-01 3 185362116 185362116 A T IGF2BP2 3'UTR 0.09 TCGA-ZU-A8S4-01 4 1018129 1018129 G A FGFRL1 Missense_Mutation p.G250D 0.07 deleterious(0) probably_damaging(0.998) TCGA-ZU-A8S4-01 4 122775917 122775917 C G BBS7 Missense_Mutation p.Q220H 0.10 tolerated(0.28) benign(0.006) TCGA-ZU-A8S4-01 4 146057798 146057798 G A OTUD4 3'UTR 0.14 TCGA-ZU-A8S4-01 4 150469687 150469687 T A RP11-526A4.1 RNA 0.07 TCGA-ZU-A8S4-01 4 151505348 151505348 A G MAB21L2 3'UTR 0.16 TCGA-ZU-A8S4-01 4 2628261 2628262 TC - FAM193A 5'UTR 0.13 TCGA-ZU-A8S4-01 5 140735956 140735956 A G PCDHGA4 Missense_Mutation p.T397A 0.21 deleterious_low_confidence(0.01) benign(0.34) TCGA-ZU-A8S4-01 5 176799393 176799393 G C RGS14 3'UTR 0.12 TCGA-ZU-A8S4-01 5 21842369 21842369 C A CDH12 Missense_Mutation p.A239S 0.10 deleterious(0) probably_damaging(0.993) TCGA-ZU-A8S4-01 5 476666 476666 G A SLC9A3 Missense_Mutation p.R628W 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-ZU-A8S4-01 6 102074369 102074369 G A GRIK2 Missense_Mutation p.R133H 0.10 tolerated(0.08) possibly_damaging(0.753) TCGA-ZU-A8S4-01 6 111793218 111793218 G C REV3L Intron 0.11 TCGA-ZU-A8S4-01 6 148872154 148872154 A G SASH1 3'UTR 0.22 TCGA-ZU-A8S4-01 6 30691487 30691487 G A TUBB Silent p.K216K 0.10 TCGA-ZU-A8S4-01 6 54254824 54254824 A G TINAG 3'UTR 0.12 TCGA-ZU-A8S4-01 7 112723989 112723989 G C GPR85 Missense_Mutation p.A263G 0.07 tolerated(0.68) benign(0.005) TCGA-ZU-A8S4-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.16 deleterious(0) probably_damaging(0.967) TCGA-ZU-A8S4-01 7 151935871 151935871 C A KMT2C Missense_Mutation p.W858L 0.06 probably_damaging(0.999) TCGA-ZU-A8S4-01 7 55249090 55249090 C T EGFR Silent p.G796G 0.10 TCGA-ZU-A8S4-01 7 63809199 63809199 A C ZNF736 Missense_Mutation p.K320Q 0.15 deleterious(0.02) probably_damaging(0.93) TCGA-ZU-A8S4-01 8 124340548 124340548 A G ATAD2 Silent p.N1250N 0.06 TCGA-ZU-A8S4-01 8 75737721 75737721 C A PI15 Silent p.G79G 0.10 TCGA-ZU-A8S4-01 9 125752410 125752410 G C RABGAP1 Missense_Mutation p.A281P 0.08 tolerated(0.34) benign(0) TCGA-ZU-A8S4-01 9 125752411 125752411 C T RABGAP1 Missense_Mutation p.A281V 0.08 tolerated(0.39) benign(0.005) TCGA-ZU-A8S4-01 9 6007401 6007401 G A KIAA2026 Silent p.F129F 0.23 TCGA-ZU-A8S4-01 9 74489678 74489678 T C ABHD17B Missense_Mutation p.M107V 0.07 deleterious(0) possibly_damaging(0.557) TCGA-ZU-A8S4-01 X 41088540 41088540 C T USP9X Nonsense_Mutation p.R2366* 0.20