sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-FA-8693-01 10 124340397 124340397 C T DMBT1 Missense_Mutation p.P340L 0.21 tolerated(0.29) possibly_damaging(0.588) TCGA-FA-8693-01 10 128807004 128807004 G A DOCK1 Missense_Mutation p.V332I 0.13 tolerated(1) benign(0.097) TCGA-FA-8693-01 10 55569116 55569116 A G PCDH15 Missense_Mutation p.L499P 0.16 deleterious_low_confidence(0) unknown(0) TCGA-FA-8693-01 10 81702260 81702260 C T SFTPD Missense_Mutation p.G106E 0.13 deleterious(0.02) probably_damaging(0.972) TCGA-FA-8693-01 10 81702261 81702261 C A SFTPD Splice_Site p.X106_splice 0.12 TCGA-FA-8693-01 10 82329986 82329986 T C SH2D4B Silent p.P87P 0.17 TCGA-FA-8693-01 10 84498369 84498369 A G NRG3 Silent p.Q330Q 0.19 TCGA-FA-8693-01 10 88729823 88729823 T G ADIRF Intron 0.19 TCGA-FA-8693-01 10 96998439 96998439 T C PDLIM1 Missense_Mutation p.D230G 0.19 deleterious(0.04) possibly_damaging(0.589) TCGA-FA-8693-01 11 108186558 108186558 C G ATM Silent p.L2005L 0.22 TCGA-FA-8693-01 11 111249896 111249896 A G POU2AF1 Missense_Mutation p.W3R 0.21 deleterious(0) possibly_damaging(0.58) TCGA-FA-8693-01 11 113103477 113103477 A C NCAM1 Missense_Mutation p.N537T 0.21 deleterious(0) possibly_damaging(0.793) TCGA-FA-8693-01 11 114401578 114401578 G A NXPE1 5'UTR 0.22 TCGA-FA-8693-01 11 126294687 126294687 G A KIRREL3 Missense_Mutation p.R709W 0.25 deleterious(0) probably_damaging(0.995) TCGA-FA-8693-01 11 126299148 126299148 G A KIRREL3 Nonsense_Mutation p.R578* 0.31 TCGA-FA-8693-01 11 133790483 133790483 G A IGSF9B Missense_Mutation p.P1046L 0.26 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-FA-8693-01 11 134076494 134076494 C T NCAPD3 Missense_Mutation p.S339N 0.21 deleterious(0.01) possibly_damaging(0.54) TCGA-FA-8693-01 11 15267551 15267551 T G INSC Missense_Mutation p.L569V 0.19 deleterious(0) probably_damaging(0.999) TCGA-FA-8693-01 11 30034618 30034618 T G KCNA4 5'UTR 0.20 TCGA-FA-8693-01 11 34667997 34667997 T G EHF Missense_Mutation p.F59V 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-FA-8693-01 11 4608396 4608396 A C OR52I2 Silent p.G118G 0.27 TCGA-FA-8693-01 11 49831413 49831413 A G RP11-707M1.1 RNA 0.20 TCGA-FA-8693-01 11 5475542 5475542 T G OR51I2 Missense_Mutation p.L275R 0.16 deleterious(0) probably_damaging(0.969) TCGA-FA-8693-01 11 56409697 56409697 A C OR5AP2 Silent p.S73S 0.14 TCGA-FA-8693-01 11 62997098 62997098 T G SLC22A25 Missense_Mutation p.Q9H 0.24 tolerated(0.06) benign(0.019) TCGA-FA-8693-01 11 70171055 70171055 G A PPFIA1 Missense_Mutation p.E157K 0.22 deleterious(0) probably_damaging(0.998) TCGA-FA-8693-01 11 7111451 7111451 G T RBMXL2 Missense_Mutation p.R367L 0.21 tolerated(0.22) unknown(0) TCGA-FA-8693-01 11 89182653 89182653 T C NOX4 Missense_Mutation p.R102G 0.24 deleterious(0.05) benign(0.143) TCGA-FA-8693-01 11 92577819 92577819 C T FAT3 Silent p.H3762H 0.18 TCGA-FA-8693-01 12 118458748 118458748 G A RFC5 Missense_Mutation p.R102Q 0.23 deleterious(0) probably_damaging(0.995) TCGA-FA-8693-01 12 130649289 130649289 T G FZD10 3'UTR 0.24 TCGA-FA-8693-01 12 130855827 130855827 C T PIWIL1 Missense_Mutation p.R810C 0.20 tolerated(0.1) benign(0.17) TCGA-FA-8693-01 12 27070328 27070328 T G ASUN Silent p.V342V 0.24 TCGA-FA-8693-01 12 49934682 49934682 A G KCNH3 Missense_Mutation p.H26R 0.23 deleterious(0.04) benign(0.027) TCGA-FA-8693-01 12 53880795 53880795 G A MAP3K12 Silent p.C127C 0.26 TCGA-FA-8693-01 12 64002401 64002401 A C DPY19L2 Missense_Mutation p.F425V 0.25 tolerated(0.21) benign(0.014) TCGA-FA-8693-01 12 72022729 72022729 A G ZFC3H1 Silent p.D1305D 0.39 TCGA-FA-8693-01 12 8245311 8245311 A G NECAP1 Silent p.Q141Q 0.28 TCGA-FA-8693-01 12 85421763 85421763 A C TSPAN19 Missense_Mutation p.L60V 0.18 deleterious(0.01) probably_damaging(0.926) TCGA-FA-8693-01 12 85674196 85674196 T G ALX1 Missense_Mutation p.F53V 0.17 deleterious_low_confidence(0.01) benign(0.033) TCGA-FA-8693-01 12 95926864 95926864 T C USP44 Missense_Mutation p.Q390R 0.24 tolerated(1) benign(0.009) TCGA-FA-8693-01 13 23907902 23907902 A C SACS Silent p.T3371T 0.21 TCGA-FA-8693-01 13 27239258 27239258 T C WASF3 Missense_Mutation p.L76P 0.30 deleterious(0) probably_damaging(1) TCGA-FA-8693-01 13 39262561 39262561 T C FREM2 Silent p.T360T 0.21 TCGA-FA-8693-01 13 58208119 58208119 A G PCDH17 Missense_Mutation p.Q480R 0.14 tolerated(0.1) probably_damaging(0.93) TCGA-FA-8693-01 14 102552577 102552577 C G HSP90AA1 Missense_Mutation p.E169Q 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FA-8693-01 14 106209160 106209160 G C IGHG1 Missense_Mutation p.C83W 0.24 deleterious(0) probably_damaging(0.999) TCGA-FA-8693-01 14 106370387 106370387 A T IGHD2-8 3'Flank 0.17 TCGA-FA-8693-01 14 106370563 106370563 G A IGHD3-9 Nonsense_Mutation p.R3* 0.21 TCGA-FA-8693-01 14 106370569 106370569 C T IGHD3-9 Translation_Start_Site p.V1? 0.20 unknown(0) TCGA-FA-8693-01 14 106375781 106375781 C G IGHD1-7 Translation_Start_Site p.G1? 0.27 benign(0.209) TCGA-FA-8693-01 14 107170135 107170135 G A IGHV1-69 Silent p.S49S 0.08 TCGA-FA-8693-01 14 107178838 107178838 C G IGHV2-70 Silent p.T113T 0.24 TCGA-FA-8693-01 14 107178842 107178842 G A IGHV2-70 Missense_Mutation p.A112V 0.15 deleterious(0.01) probably_damaging(0.948) TCGA-FA-8693-01 14 107178869 107178869 A G IGHV2-70 Missense_Mutation p.M103T 0.12 deleterious(0) benign(0.175) TCGA-FA-8693-01 14 107178870 107178870 T C IGHV2-70 Missense_Mutation p.M103V 0.12 tolerated(0.05) benign(0.003) TCGA-FA-8693-01 14 107179031 107179031 C T IGHV2-70 Missense_Mutation p.S49N 0.23 deleterious(0.02) benign(0.001) TCGA-FA-8693-01 14 24544773 24544773 A C CPNE6 Silent p.S279S 0.16 TCGA-FA-8693-01 14 24651307 24651307 C T IPO4 Silent p.Q887Q 0.24 TCGA-FA-8693-01 14 24878537 24878537 G A NYNRIN Missense_Mutation p.A513T 0.13 tolerated_low_confidence(0.39) benign(0.014) TCGA-FA-8693-01 14 62536400 62536400 C T SYT16 Silent p.S201S 0.22 TCGA-FA-8693-01 14 96771961 96771961 T A ATG2B Silent p.G1566G 0.36 TCGA-FA-8693-01 15 27765242 27765242 A C GABRG3 Missense_Mutation p.K279N 0.20 deleterious(0) probably_damaging(0.999) TCGA-FA-8693-01 15 45003745 45003745 A G B2M Translation_Start_Site p.M1? 0.30 deleterious(0) possibly_damaging(0.678) TCGA-FA-8693-01 15 54025345 54025345 A C WDR72 Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.998) TCGA-FA-8693-01 15 64386038 64386038 A G FAM96A 5'UTR 0.27 TCGA-FA-8693-01 16 21011708 21011708 A C DNAH3 Missense_Mutation p.F2087V 0.02 deleterious(0.04) possibly_damaging(0.67) TCGA-FA-8693-01 16 23117736 23117736 A C USP31 Missense_Mutation p.F282V 0.16 deleterious(0) probably_damaging(0.999) TCGA-FA-8693-01 16 28935738 28935738 T C RABEP2 Missense_Mutation p.Q87R 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-FA-8693-01 16 30795076 30795076 C T ZNF629 Silent p.S191S 0.38 TCGA-FA-8693-01 16 30997460 30997460 C T HSD3B7 Missense_Mutation p.T86M 0.21 tolerated(0.15) benign(0.386) TCGA-FA-8693-01 16 4882161 4882161 C T GLYR1 Missense_Mutation p.R119K 0.18 tolerated(1) benign(0) TCGA-FA-8693-01 16 52478202 52478202 T C TOX3 Missense_Mutation p.S325G 0.11 deleterious(0.02) probably_damaging(0.952) TCGA-FA-8693-01 16 847932 847932 C G CHTF18 Missense_Mutation p.S962C 0.06 deleterious(0) probably_damaging(0.998) TCGA-FA-8693-01 17 10409204 10409204 T G MYH1 Missense_Mutation p.N700T 0.17 deleterious(0) possibly_damaging(0.749) TCGA-FA-8693-01 17 12859254 12859254 G A ARHGAP44 Missense_Mutation p.A403T 0.18 deleterious(0) probably_damaging(0.997) TCGA-FA-8693-01 17 21206529 21206529 T C MAP2K3 Missense_Mutation p.L184P 0.13 deleterious(0) probably_damaging(0.999) TCGA-FA-8693-01 17 29661926 29661927 - C NF1 Frame_Shift_Ins p.H1962Pfs*2 0.19 TCGA-FA-8693-01 17 33497208 33497208 C T UNC45B Silent p.D541D 0.17 TCGA-FA-8693-01 17 3572853 3572853 A C EMC6 3'UTR 0.27 TCGA-FA-8693-01 17 43192818 43192818 G T PLCD3 Missense_Mutation p.P485T 0.24 tolerated(0.46) benign(0.272) TCGA-FA-8693-01 17 56083867 56083867 A C SRSF1 Nonsense_Mutation p.Y72* 0.23 TCGA-FA-8693-01 17 61895140 61895140 T C DDX42 Silent p.S733S 0.20 TCGA-FA-8693-01 17 72522004 72522004 G A CD300LB Missense_Mutation p.R122C 0.23 tolerated(0.21) benign(0.019) TCGA-FA-8693-01 17 76354959 76354959 C T SOCS3 Missense_Mutation p.S73N 0.24 deleterious(0) probably_damaging(0.995) TCGA-FA-8693-01 17 80195634 80195634 A G SLC16A3 Missense_Mutation p.I330V 0.21 tolerated(0.24) benign(0.1) TCGA-FA-8693-01 17 970326 970326 G A ABR Silent p.I391I 0.25 TCGA-FA-8693-01 18 24496569 24496569 T C CHST9 Missense_Mutation p.K329R 0.21 tolerated(0.31) benign(0.11) TCGA-FA-8693-01 18 44140215 44140215 C T LOXHD1 5'Flank 0.24 TCGA-FA-8693-01 18 59195219 59195219 A G CDH20 Missense_Mutation p.K346R 0.16 tolerated(0.17) benign(0.186) TCGA-FA-8693-01 19 16222712 16222712 A C RAB8A Translation_Start_Site p.M1? 0.10 deleterious(0.01) possibly_damaging(0.521) TCGA-FA-8693-01 19 22847585 22847585 A G ZNF492 Missense_Mutation p.K372E 0.14 deleterious(0) possibly_damaging(0.806) TCGA-FA-8693-01 19 35232469 35232469 C T ZNF181 Missense_Mutation p.H395Y 0.18 deleterious(0) probably_damaging(0.964) TCGA-FA-8693-01 19 40504295 40504295 C T ZNF546 Missense_Mutation p.P21L 0.30 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-FA-8693-01 19 53793122 53793122 G T BIRC8 Nonsense_Mutation p.S169* 0.16 TCGA-FA-8693-01 19 55324747 55324747 G A KIR2DL4 Intron 0.49 TCGA-FA-8693-01 19 57036891 57036891 A C ZNF471 Missense_Mutation p.K485N 0.11 deleterious(0) probably_damaging(0.982) TCGA-FA-8693-01 19 57175152 57175152 T G ZNF835 Missense_Mutation p.K472T 0.15 deleterious(0.01) probably_damaging(0.922) TCGA-FA-8693-01 19 9026242 9026242 A C MUC16 Silent p.R12248R 0.04 TCGA-FA-8693-01 1 111724864 111724864 G A CEPT1 Missense_Mutation p.G257E 0.27 deleterious(0.04) probably_damaging(1) TCGA-FA-8693-01 1 113153627 113153627 T C ST7L Splice_Site p.X97_splice 0.23 TCGA-FA-8693-01 1 114495495 114495495 C G HIPK1 Missense_Mutation p.A395G 0.21 deleterious(0) probably_damaging(0.99) TCGA-FA-8693-01 1 12942187 12942187 A G PRAMEF4 Silent p.A121A 0.09 TCGA-FA-8693-01 1 152328295 152328295 C G FLG2 Missense_Mutation p.G656A 0.06 unknown(0) TCGA-FA-8693-01 1 152883856 152883856 G A IVL Missense_Mutation p.G528E 0.21 tolerated(0.52) benign(0.001) TCGA-FA-8693-01 1 16272337 16272337 T A ZBTB17 Splice_Site p.X179_splice 0.29 TCGA-FA-8693-01 1 1650828 1650828 A G CDK11A Silent p.H98H 0.21 TCGA-FA-8693-01 1 167741720 167741720 A G MPZL1 Missense_Mutation p.E156G 0.17 tolerated(0.1) possibly_damaging(0.859) TCGA-FA-8693-01 1 197070009 197070009 C A ASPM Missense_Mutation p.G2791V 0.21 tolerated(0.32) benign(0.004) TCGA-FA-8693-01 1 203274836 203274836 G T BTG2 Missense_Mutation p.R34S 0.24 deleterious(0.05) benign(0.326) TCGA-FA-8693-01 1 204943936 204943936 C T NFASC Missense_Mutation p.R515C 0.26 tolerated(0.07) probably_damaging(0.989) TCGA-FA-8693-01 1 207083674 207083674 T C FAIM3 Missense_Mutation p.Y241C 0.12 tolerated(0.05) possibly_damaging(0.598) TCGA-FA-8693-01 1 214171399 214171399 A C PROX1 Missense_Mutation p.K507N 0.26 tolerated(0.12) benign(0.438) TCGA-FA-8693-01 1 216052400 216052400 A C USH2A Missense_Mutation p.L2755R 0.24 probably_damaging(0.936) TCGA-FA-8693-01 1 216221971 216221971 A G USH2A Missense_Mutation p.L2023P 0.27 possibly_damaging(0.74) TCGA-FA-8693-01 1 226836447 226836447 T - ITPKB Frame_Shift_Del p.N653Tfs*37 0.21 TCGA-FA-8693-01 1 240071117 240071117 G T CHRM3 Missense_Mutation p.M122I 0.16 deleterious(0) probably_damaging(0.983) TCGA-FA-8693-01 1 38032563 38032563 G A GNL2 Missense_Mutation p.R697C 0.21 deleterious(0) probably_damaging(0.97) TCGA-FA-8693-01 1 50163032 50163032 A C AGBL4 Missense_Mutation p.F79V 0.18 tolerated(0.11) possibly_damaging(0.849) TCGA-FA-8693-01 1 60223665 60223665 G T FGGY Splice_Site p.X549_splice 0.12 TCGA-FA-8693-01 1 60491072 60491072 C G C1orf87 Splice_Site p.X376_splice 0.24 TCGA-FA-8693-01 1 64104389 64104389 G A PGM1 Silent p.E372E 0.05 TCGA-FA-8693-01 1 89476646 89476646 T C GBP3 Missense_Mutation p.I435V 0.20 tolerated(0.23) benign(0.001) TCGA-FA-8693-01 1 89476655 89476655 A G GBP3 Missense_Mutation p.C432R 0.18 tolerated(1) benign(0) TCGA-FA-8693-01 1 94670633 94670633 T G ARHGAP29 Missense_Mutation p.E227D 0.13 tolerated(0.09) probably_damaging(0.99) TCGA-FA-8693-01 20 10603706 10603706 G A SLX4IP Silent p.A302A 0.15 TCGA-FA-8693-01 20 16348090 16348090 G A KIF16B Missense_Mutation p.P1294S 0.14 tolerated_low_confidence(0.16) benign(0.038) TCGA-FA-8693-01 20 21687153 21687153 C T PAX1 Missense_Mutation p.R122C 0.38 deleterious(0) probably_damaging(1) TCGA-FA-8693-01 20 40709537 40709537 T A PTPRT Missense_Mutation p.E1436D 0.21 deleterious(0.01) benign(0.396) TCGA-FA-8693-01 20 8000141 8000141 C T TMX4 Silent p.Q40Q 0.25 TCGA-FA-8693-01 20 9498795 9498795 C T LAMP5 Missense_Mutation p.P195L 0.24 tolerated(0.33) benign(0.005) TCGA-FA-8693-01 21 32554842 32554842 G T TIAM1 Missense_Mutation p.P928H 0.27 deleterious(0) benign(0.199) TCGA-FA-8693-01 22 23029447 23029447 T A IGLV3-25 Missense_Mutation p.S17T 0.40 deleterious(0.02) possibly_damaging(0.784) TCGA-FA-8693-01 22 23029479 23029479 C G IGLV3-25 Silent p.P27P 0.41 TCGA-FA-8693-01 22 23029524 23029524 T G IGLV3-25 Silent p.S42S 0.40 TCGA-FA-8693-01 22 23029546 23029546 T A IGLV3-25 Missense_Mutation p.Y50N 0.25 tolerated(0.06) benign(0.216) TCGA-FA-8693-01 22 23214129 23214129 C T IGLV4-3 Missense_Mutation p.L96F 0.48 deleterious(0) probably_damaging(0.999) TCGA-FA-8693-01 22 23230138 23230138 C T IGLL5 5'UTR 0.08 TCGA-FA-8693-01 22 23230151 23230151 G A IGLL5 5'UTR 0.23 TCGA-FA-8693-01 22 23230166 23230166 C T IGLL5 5'UTR 0.31 TCGA-FA-8693-01 22 23230283 23230283 G A IGLL5 Missense_Mutation p.G17D 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.672) TCGA-FA-8693-01 22 23230315 23230315 C T IGLL5 Silent p.L28L 0.27 TCGA-FA-8693-01 22 23230318 23230318 C G IGLL5 Missense_Mutation p.L29V 0.22 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-FA-8693-01 22 23230374 23230374 C G IGLL5 Missense_Mutation p.S47R 0.24 tolerated_low_confidence(0.27) benign(0.022) TCGA-FA-8693-01 22 23230404 23230404 A G IGLL5 Silent p.G57G 0.22 TCGA-FA-8693-01 22 23956338 23956340 TCT - C22orf43 In_Frame_Del p.E201del 0.25 TCGA-FA-8693-01 22 42607915 42607915 G A TCF20 Missense_Mutation p.R1133W 0.44 benign(0.21) TCGA-FA-8693-01 22 43600118 43600118 G A SCUBE1 Missense_Mutation p.A951V 0.24 deleterious(0) probably_damaging(0.998) TCGA-FA-8693-01 2 101188050 101188050 A G PDCL3 Splice_Site p.X123_splice 0.23 TCGA-FA-8693-01 2 120799656 120799656 T G EPB41L5 Silent p.G85G 0.14 TCGA-FA-8693-01 2 121708820 121708820 C - GLI2 Frame_Shift_Del p.P87Lfs*14 0.21 TCGA-FA-8693-01 2 121747495 121747495 G C GLI2 Missense_Mutation p.E1335D 0.27 tolerated(0.28) benign(0.004) TCGA-FA-8693-01 2 125192229 125192229 T C CNTNAP5 Missense_Mutation p.L233P 0.19 deleterious(0) probably_damaging(0.994) TCGA-FA-8693-01 2 141356256 141356256 A G LRP1B Missense_Mutation p.S2380P 0.21 benign(0.307) TCGA-FA-8693-01 2 166847770 166847770 T G SCN1A Missense_Mutation p.K2005N 0.29 tolerated_low_confidence(0.1) benign(0.001) TCGA-FA-8693-01 2 167168208 167168208 A G SCN9A Missense_Mutation p.L20P 0.26 deleterious(0) probably_damaging(0.962) TCGA-FA-8693-01 2 210783352 210783352 G A UNC80 Missense_Mutation p.G1704R 0.22 probably_damaging(0.999) TCGA-FA-8693-01 2 228173618 228173618 C A COL4A3 Missense_Mutation p.T1489N 0.29 unknown(0) TCGA-FA-8693-01 2 236715883 236715883 T C AGAP1 Missense_Mutation p.S320P 0.08 tolerated(0.32) probably_damaging(0.995) TCGA-FA-8693-01 2 32724813 32724813 C T BIRC6 Nonsense_Mutation p.R2890* 0.22 TCGA-FA-8693-01 2 32820100 32820101 - A BIRC6 Frame_Shift_Ins p.L4504Tfs*3 0.22 TCGA-FA-8693-01 2 64322005 64322005 G A PELI1 Missense_Mutation p.A363V 0.25 tolerated(0.07) benign(0.033) TCGA-FA-8693-01 2 74761669 74761669 G A LOXL3 Silent p.H604H 0.06 TCGA-FA-8693-01 2 87013051 87013051 A T CD8A Missense_Mutation p.Y234N 0.24 deleterious(0.02) possibly_damaging(0.46) TCGA-FA-8693-01 3 124103697 124103697 G A KALRN Silent p.T590T 0.18 TCGA-FA-8693-01 3 125702141 125702141 A G ROPN1B Missense_Mutation p.N206S 0.14 tolerated(0.25) probably_damaging(0.996) TCGA-FA-8693-01 3 130128909 130128909 A T COL6A5 Missense_Mutation p.Q1533H 0.21 tolerated(0.16) benign(0.022) TCGA-FA-8693-01 3 137717670 137717670 T A CLDN18 5'UTR 0.17 TCGA-FA-8693-01 3 145841964 145841964 T G PLOD2 Silent p.R54R 0.16 TCGA-FA-8693-01 3 167023655 167023655 A G ZBBX Missense_Mutation p.S501P 0.21 tolerated(0.24) benign(0.004) TCGA-FA-8693-01 3 169684611 169684611 A G SEC62 Translation_Start_Site p.M1? 0.19 deleterious(0.03) benign(0.125) TCGA-FA-8693-01 3 173322630 173322630 T C NLGN1 Missense_Mutation p.L81P 0.20 deleterious(0) possibly_damaging(0.906) TCGA-FA-8693-01 3 25674218 25674218 T - TOP2B Frame_Shift_Del p.K360Rfs*8 0.18 TCGA-FA-8693-01 3 37368928 37368928 A T GOLGA4 Missense_Mutation p.I1873F 0.27 benign(0.005) TCGA-FA-8693-01 3 48697557 48697557 G C CELSR3 Silent p.A837A 0.28 TCGA-FA-8693-01 3 49413009 49413009 C T RHOA Missense_Mutation p.R5Q 0.30 tolerated(0.06) benign(0.012) TCGA-FA-8693-01 3 87018229 87018229 A C VGLL3 Missense_Mutation p.F150V 0.25 tolerated(0.08) possibly_damaging(0.78) TCGA-FA-8693-01 4 106196908 106196908 A - TET2 Frame_Shift_Del p.N1748Tfs*15 0.15 TCGA-FA-8693-01 4 111397599 111397599 A C ENPEP Missense_Mutation p.K10T 0.15 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-FA-8693-01 4 119606673 119606673 A C METTL14 5'UTR 0.21 TCGA-FA-8693-01 4 122846198 122846198 A C TRPC3 Missense_Mutation p.L384R 0.05 deleterious(0.04) benign(0.399) TCGA-FA-8693-01 4 146033391 146033391 T C ABCE1 Silent p.I237I 0.15 TCGA-FA-8693-01 4 157684315 157684315 T C PDGFC Missense_Mutation p.K322R 0.16 tolerated(0.32) probably_damaging(0.999) TCGA-FA-8693-01 4 158254497 158254497 C - GRIA2 Frame_Shift_Del p.R384Gfs*45 0.14 TCGA-FA-8693-01 4 187455075 187455075 T C MTNR1A Missense_Mutation p.E274G 0.10 deleterious(0.01) benign(0.049) TCGA-FA-8693-01 4 1957912 1957912 A C WHSC1 Missense_Mutation p.N960H 0.31 tolerated(0.15) benign(0.072) TCGA-FA-8693-01 4 25783964 25783964 T A SEL1L3 Missense_Mutation p.Y786F 0.26 deleterious(0) probably_damaging(0.983) TCGA-FA-8693-01 4 30723952 30723952 A C PCDH7 Missense_Mutation p.D303A 0.11 deleterious(0) probably_damaging(0.998) TCGA-FA-8693-01 4 40045542 40045542 C T RP11-333E13.4 RNA 0.35 TCGA-FA-8693-01 4 57777675 57777676 - A REST Nonsense_Mutation p.Y291* 0.17 TCGA-FA-8693-01 4 66189741 66189741 T C EPHA5 3'UTR 0.23 TCGA-FA-8693-01 4 68514904 68514904 T C UBA6 Missense_Mutation p.H377R 0.29 tolerated(1) benign(0) TCGA-FA-8693-01 4 7008366 7008366 T C TBC1D14 Silent p.G453G 0.20 TCGA-FA-8693-01 4 79399181 79399181 C T FRAS1 Silent p.S2688S 0.25 TCGA-FA-8693-01 5 158526531 158526531 A C EBF1 5'UTR 0.24 TCGA-FA-8693-01 5 158526573 158526573 A T EBF1 5'UTR 0.40 TCGA-FA-8693-01 5 178392474 178392474 G A ZNF454 Missense_Mutation p.E357K 0.10 tolerated(0.12) possibly_damaging(0.615) TCGA-FA-8693-01 5 82816658 82816658 A C VCAN Missense_Mutation p.S845R 0.25 tolerated(0.17) benign(0.048) TCGA-FA-8693-01 5 82833506 82833506 T G VCAN Missense_Mutation p.F1562V 0.22 tolerated(0.09) benign(0.09) TCGA-FA-8693-01 5 89948249 89948249 A T GPR98 Missense_Mutation p.E1168V 0.22 possibly_damaging(0.788) TCGA-FA-8693-01 6 125621684 125621684 C T HDDC2 Missense_Mutation p.R69Q 0.22 deleterious(0) probably_damaging(0.952) TCGA-FA-8693-01 6 134494703 134494703 G - SGK1 Frame_Shift_Del p.P172Qfs*25 0.19 TCGA-FA-8693-01 6 134495169 134495169 G C SGK1 Missense_Mutation p.L163V 0.19 tolerated(0.17) benign(0.006) TCGA-FA-8693-01 6 134495658 134495658 G A SGK1 Missense_Mutation p.A143V 0.15 tolerated(0.54) benign(0.003) TCGA-FA-8693-01 6 134495764 134495764 G A SGK1 Intron 0.20 TCGA-FA-8693-01 6 142399929 142399929 T C NMBR Silent p.E178E 0.21 TCGA-FA-8693-01 6 26157012 26157012 G A HIST1H1E Missense_Mutation p.A132T 0.19 tolerated(0.2) unknown(0) TCGA-FA-8693-01 6 26250650 26250650 G C HIST1H3F Missense_Mutation p.L62V 0.03 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-FA-8693-01 6 26377104 26377104 A C BTN3A2 3'UTR 0.10 TCGA-FA-8693-01 6 27775641 27775641 G A HIST1H2BL Missense_Mutation p.S15F 0.25 tolerated_low_confidence(0.21) probably_damaging(0.994) TCGA-FA-8693-01 6 31549632 31549641 GTTACCTGGT ATTAGTTGGC LTB Splice_Site p.X55_splice 0.16 TCGA-FA-8693-01 6 32020562 32020562 G A TNXB Silent p.G2998G 0.11 TCGA-FA-8693-01 6 42690015 42690015 G T PRPH2 Missense_Mutation p.L20I 0.28 deleterious(0) possibly_damaging(0.876) TCGA-FA-8693-01 6 55922614 55922614 T G COL21A1 Missense_Mutation p.K905N 0.18 tolerated(0.21) unknown(0) TCGA-FA-8693-01 6 6007042 6007042 C T NRN1 5'UTR 0.22 TCGA-FA-8693-01 6 84061836 84061836 C T ME1 Missense_Mutation p.D129N 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FA-8693-01 6 86176854 86176854 T C NT5E Missense_Mutation p.I139T 0.03 deleterious(0) possibly_damaging(0.71) TCGA-FA-8693-01 6 96653595 96653595 T C FUT9 3'UTR 0.18 TCGA-FA-8693-01 7 117368154 117368154 T C CTTNBP2 Silent p.Q1348Q 0.19 TCGA-FA-8693-01 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.18 deleterious(0) benign(0.411) TCGA-FA-8693-01 7 4281541 4281541 A G SDK1 Missense_Mutation p.T2083A 0.18 tolerated(0.08) benign(0.074) TCGA-FA-8693-01 7 43688214 43688214 A G COA1 5'UTR 0.33 TCGA-FA-8693-01 7 5662542 5662542 C T RNF216 Silent p.L907L 0.17 TCGA-FA-8693-01 7 76132841 76132841 G A DTX2 Silent p.S496S 0.23 TCGA-FA-8693-01 7 78636484 78636484 A C MAGI2 Missense_Mutation p.L114V 0.15 deleterious(0.01) benign(0.355) TCGA-FA-8693-01 7 80117974 80117974 A C GNAT3 Silent p.G60G 0.18 TCGA-FA-8693-01 7 87195445 87195445 T - ABCB1 Frame_Shift_Del p.T215Pfs*3 0.18 TCGA-FA-8693-01 7 93055673 93055673 C A CALCR Missense_Mutation p.A508S 0.22 tolerated_low_confidence(0.05) benign(0.161) TCGA-FA-8693-01 7 99699327 99699327 C G AP4M1 5'UTR 0.19 TCGA-FA-8693-01 8 20031913 20031913 C T SLC18A1 Missense_Mutation p.R197Q 0.17 deleterious(0.01) possibly_damaging(0.871) TCGA-FA-8693-01 8 25198452 25198452 T C DOCK5 Missense_Mutation p.L796P 0.14 tolerated(0.32) benign(0.304) TCGA-FA-8693-01 8 56910951 56910951 G A LYN Missense_Mutation p.R366Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-FA-8693-01 8 57354094 57354094 C T PENK Missense_Mutation p.E181K 0.16 deleterious(0.05) benign(0.24) TCGA-FA-8693-01 9 137779176 137779176 G A FCN2 Missense_Mutation p.S286N 0.13 deleterious(0.04) benign(0.075) TCGA-FA-8693-01 9 140120215 140120215 G A C9orf169 Missense_Mutation p.G48R 0.22 tolerated_low_confidence(0.11) probably_damaging(0.988) TCGA-FA-8693-01 9 14859353 14859353 C T FREM1 Silent p.A153A 0.17 TCGA-FA-8693-01 9 32430457 32430457 T G ACO1 Missense_Mutation p.N537K 0.03 deleterious(0) probably_damaging(0.992) TCGA-FA-8693-01 9 5457196 5457196 G A CD274 Nonsense_Mutation p.W57* 0.14 TCGA-FA-8693-01 9 5462914 5462914 G A CD274 Missense_Mutation p.G159S 0.28 deleterious(0) probably_damaging(1) TCGA-FA-8693-01 X 13636081 13636082 - A EGFL6 Frame_Shift_Ins p.M339Nfs*6 0.33 TCGA-FA-8693-01 X 49965604 49965604 T G AKAP4 5'UTR 0.04 TCGA-FA-8693-01 X 88008609 88008609 A G CPXCR1 Missense_Mutation p.Q65R 0.28 tolerated(0.06) benign(0.005) TCGA-FA-A4BB-01 10 117704185 117704185 T A ATRNL1 Missense_Mutation p.S1345R 0.10 deleterious(0) probably_damaging(0.996) TCGA-FA-A4BB-01 10 120801701 120801701 G A EIF3A Nonsense_Mutation p.R1111* 0.08 TCGA-FA-A4BB-01 10 97922560 97922560 T G ZNF518A RNA 0.06 TCGA-FA-A4BB-01 11 109294584 109294584 C T C11orf87 Silent p.I75I 0.15 TCGA-FA-A4BB-01 11 118765330 118765331 TC - CXCR5 Frame_Shift_Del p.S361* 0.30 TCGA-FA-A4BB-01 11 1271100 1271100 C A MUC5B Silent p.T4330T 0.10 TCGA-FA-A4BB-01 11 130318901 130318901 C T ADAMTS15 Silent p.F11F 0.10 TCGA-FA-A4BB-01 11 132016182 132016182 T A NTM Silent p.T58T 0.22 TCGA-FA-A4BB-01 11 134217312 134217312 G T GLB1L2 Missense_Mutation p.R181S 0.08 deleterious(0.03) benign(0.316) TCGA-FA-A4BB-01 11 58978341 58978341 G A MPEG1 Silent p.T666T 0.08 TCGA-FA-A4BB-01 11 58978525 58978525 G A MPEG1 Missense_Mutation p.A605V 0.42 tolerated(0.32) benign(0.004) TCGA-FA-A4BB-01 11 58979592 58979592 G C MPEG1 Missense_Mutation p.N249K 0.44 tolerated(0.28) benign(0.359) TCGA-FA-A4BB-01 11 65009514 65009514 C A SLC22A20 RNA 0.10 TCGA-FA-A4BB-01 11 66411319 66411319 C T RBM14-RBM4 Missense_Mutation p.P246S 0.14 deleterious(0.01) unknown(0) TCGA-FA-A4BB-01 11 72408662 72408662 C T ARAP1 Missense_Mutation p.V924M 0.08 deleterious(0) possibly_damaging(0.841) TCGA-FA-A4BB-01 12 113495951 113495951 C T DTX1 5'UTR 0.14 TCGA-FA-A4BB-01 12 113496044 113496044 G A DTX1 Missense_Mutation p.G16D 0.06 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-FA-A4BB-01 12 120750455 120750455 G A SIRT4 Missense_Mutation p.V232I 0.13 tolerated(0.15) benign(0.125) TCGA-FA-A4BB-01 12 49427102 49427102 G A KMT2D Nonsense_Mutation p.Q3796* 0.17 TCGA-FA-A4BB-01 12 53227974 53227974 C T KRT79 Missense_Mutation p.G24E 0.12 tolerated(0.16) possibly_damaging(0.741) TCGA-FA-A4BB-01 12 56992706 56992706 A C BAZ2A Missense_Mutation p.I1833S 0.14 deleterious(0) probably_damaging(0.998) TCGA-FA-A4BB-01 13 103383805 103383806 - T CCDC168 Frame_Shift_Ins p.N1785Kfs*2 0.11 TCGA-FA-A4BB-01 13 24304509 24304509 G C MIPEP Missense_Mutation p.T707S 0.09 deleterious_low_confidence(0.05) benign(0.1) TCGA-FA-A4BB-01 13 60554991 60554991 T C DIAPH3 Missense_Mutation p.I495V 0.08 tolerated(0.48) benign(0.002) TCGA-FA-A4BB-01 13 84453482 84453482 C G SLITRK1 3'UTR 0.33 TCGA-FA-A4BB-01 13 84453484 84453484 C G SLITRK1 3'UTR 0.31 TCGA-FA-A4BB-01 14 106208006 106208006 C T IGHG1 Missense_Mutation p.S266N 0.11 tolerated(0.48) benign(0.034) TCGA-FA-A4BB-01 14 106208118 106208118 G A IGHG1 Missense_Mutation p.P229S 0.06 deleterious(0) probably_damaging(0.989) TCGA-FA-A4BB-01 14 106209184 106209184 G C IGHG1 Missense_Mutation p.S75R 0.11 tolerated(0.28) benign(0.194) TCGA-FA-A4BB-01 14 106236076 106236076 C G IGHG3 Missense_Mutation p.W243C 0.19 deleterious(0) probably_damaging(1) TCGA-FA-A4BB-01 14 106320810 106320810 G A IGHM Silent p.L334L 0.10 TCGA-FA-A4BB-01 14 106321810 106321810 G A IGHM Missense_Mutation p.R142W 0.16 deleterious(0) probably_damaging(0.95) TCGA-FA-A4BB-01 14 106322107 106322107 G A IGHM Silent p.L73L 0.11 TCGA-FA-A4BB-01 14 106329463 106329463 G C IGHJ6 Nonsense_Mutation p.Y2* 0.16 TCGA-FA-A4BB-01 14 35231204 35231204 A G BAZ1A Silent p.R1334R 0.09 TCGA-FA-A4BB-01 14 64637089 64637089 T C SYNE2 Missense_Mutation p.F5715S 0.16 benign(0.327) TCGA-FA-A4BB-01 15 41482151 41482151 C T EXD1 Missense_Mutation p.R289Q 0.17 tolerated(0.56) benign(0.006) TCGA-FA-A4BB-01 15 48058789 48058791 CTT - SEMA6D Intron 0.11 TCGA-FA-A4BB-01 15 50528415 50528415 G A SLC27A2 3'UTR 0.26 TCGA-FA-A4BB-01 15 63970537 63970537 C T HERC1 Missense_Mutation p.G2193S 0.14 probably_damaging(0.999) TCGA-FA-A4BB-01 15 68583512 68583512 C T FEM1B Missense_Mutation p.R606W 0.07 deleterious(0.02) benign(0.425) TCGA-FA-A4BB-01 15 79215405 79215405 A G CTSH Missense_Mutation p.Y288H 0.13 deleterious(0) probably_damaging(1) TCGA-FA-A4BB-01 16 29086413 29086413 A C RRN3P2 RNA 0.16 TCGA-FA-A4BB-01 16 32077436 32077436 C T IGHV3OR16-9 Silent p.S17S 0.08 TCGA-FA-A4BB-01 16 4747023 4747023 C A ANKS3 3'UTR 0.18 TCGA-FA-A4BB-01 16 71004449 71004449 C A HYDIN Missense_Mutation p.D1865Y 0.12 probably_damaging(0.996) TCGA-FA-A4BB-01 17 10267752 10267752 G A MYH13 Silent p.F32F 0.11 TCGA-FA-A4BB-01 17 29528446 29528446 T A NF1 Missense_Mutation p.N401K 0.09 deleterious(0.02) benign(0.016) TCGA-FA-A4BB-01 17 30179882 30179882 A C COPRS Missense_Mutation p.F112V 0.18 tolerated(0.14) possibly_damaging(0.703) TCGA-FA-A4BB-01 17 30814856 30814856 G A CDK5R1 Missense_Mutation p.S73N 0.10 tolerated(0.61) benign(0.001) TCGA-FA-A4BB-01 17 30815854 30815854 G A CDK5R1 3'UTR 0.19 TCGA-FA-A4BB-01 17 35993354 35993354 T G DDX52 Silent p.L127L 0.15 TCGA-FA-A4BB-01 17 39580747 39580747 C A KRT37 Missense_Mutation p.C10F 0.08 tolerated(0.57) benign(0.01) TCGA-FA-A4BB-01 17 42030741 42030741 G A PYY Silent p.R37R 0.11 TCGA-FA-A4BB-01 17 4836463 4836463 G A GP1BA Silent p.E188E 0.14 TCGA-FA-A4BB-01 17 56083716 56083717 CT - SRSF1 Frame_Shift_Del p.R122Sfs*21 0.12 TCGA-FA-A4BB-01 17 56408621 56408621 A G BZRAP1 5'Flank 0.14 TCGA-FA-A4BB-01 17 62137850 62137850 T G ERN1 Silent p.S395S 0.14 TCGA-FA-A4BB-01 17 66883638 66883638 G A ABCA8 Missense_Mutation p.R1012W 0.11 tolerated(0.29) benign(0.009) TCGA-FA-A4BB-01 17 73780999 73780999 C T UNK Missense_Mutation p.S13F 0.14 tolerated_low_confidence(0.08) unknown(0) TCGA-FA-A4BB-01 17 73781000 73781000 C T UNK Silent p.S13S 0.11 TCGA-FA-A4BB-01 17 8108196 8108196 A G AURKB Missense_Mutation p.V343A 0.13 tolerated_low_confidence(0.06) benign(0.003) TCGA-FA-A4BB-01 18 28725641 28725641 G T DSC1 Missense_Mutation p.P291Q 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-FA-A4BB-01 18 65180409 65180409 G T DSEL Silent p.P489P 0.10 TCGA-FA-A4BB-01 18 7049165 7049165 C T LAMA1 Missense_Mutation p.R227H 0.13 deleterious(0) probably_damaging(0.992) TCGA-FA-A4BB-01 19 14266282 14266282 G A LPHN1 Silent p.F1066F 0.15 TCGA-FA-A4BB-01 19 14288465 14288465 G A LPHN1 Silent p.D54D 0.14 TCGA-FA-A4BB-01 19 14294431 14294431 G A LPHN1 5'UTR 0.11 TCGA-FA-A4BB-01 19 3827508 3827508 G A ZFR2 Silent p.D332D 0.10 TCGA-FA-A4BB-01 19 39087002 39087002 T G MAP4K1 Missense_Mutation p.H689P 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-FA-A4BB-01 19 40487264 40487264 C G PSMC4 3'UTR 0.09 TCGA-FA-A4BB-01 19 50865329 50865329 A C NAPSA Missense_Mutation p.I82M 0.10 deleterious(0) probably_damaging(0.914) TCGA-FA-A4BB-01 19 51918654 51918654 G A SIGLEC10 Silent p.L371L 0.17 TCGA-FA-A4BB-01 19 56244558 56244558 G A NLRP9 Silent p.I213I 0.13 TCGA-FA-A4BB-01 19 58983107 58983107 G A ZNF324 Silent p.Q416Q 0.12 TCGA-FA-A4BB-01 19 643266 643266 C T FGF22 Silent p.G82G 0.18 TCGA-FA-A4BB-01 19 7505060 7505060 C T ARHGEF18 Silent p.Y78Y 0.08 TCGA-FA-A4BB-01 1 11879572 11879572 C T CLCN6 Nonsense_Mutation p.R103* 0.07 TCGA-FA-A4BB-01 1 120458147 120458147 G A NOTCH2 Nonsense_Mutation p.R2400* 0.33 TCGA-FA-A4BB-01 1 149857740 149857740 C G HIST2H2BE 3'UTR 0.09 TCGA-FA-A4BB-01 1 152278749 152278749 T G FLG Silent p.S2871S 0.09 TCGA-FA-A4BB-01 1 153346191 153346191 C T S100A12 3'UTR 0.11 TCGA-FA-A4BB-01 1 153719499 153719499 A G INTS3 Missense_Mutation p.I129V 0.13 deleterious(0.02) benign(0.151) TCGA-FA-A4BB-01 1 161695618 161695618 G A FCRLB Silent p.L105L 0.07 TCGA-FA-A4BB-01 1 16235856 16235856 C T SPEN Nonsense_Mutation p.R308* 0.23 TCGA-FA-A4BB-01 1 179609126 179609126 T G TDRD5 Missense_Mutation p.V558G 0.14 deleterious(0) probably_damaging(1) TCGA-FA-A4BB-01 1 19482847 19482847 G A UBR4 Missense_Mutation p.A1997V 0.11 possibly_damaging(0.526) TCGA-FA-A4BB-01 1 203276375 203276375 C T BTG2 Silent p.L96L 0.17 TCGA-FA-A4BB-01 1 215759865 215759865 A G KCTD3 Silent p.Q218Q 0.08 TCGA-FA-A4BB-01 1 234744272 234744272 G A IRF2BP2 Silent p.S323S 0.10 TCGA-FA-A4BB-01 1 2494626 2494626 G C TNFRSF14 Missense_Mutation p.E256Q 0.19 tolerated(0.78) benign(0.018) TCGA-FA-A4BB-01 1 6524434 6524434 C T TNFRSF25 Splice_Site p.X181_splice 0.12 TCGA-FA-A4BB-01 1 67890903 67890903 C T SERBP1 Silent p.P156P 0.11 TCGA-FA-A4BB-01 20 30904654 30904654 G C KIF3B Missense_Mutation p.E575D 0.15 tolerated(0.13) benign(0.01) TCGA-FA-A4BB-01 20 43355777 43355777 C T WISP2 Silent p.C194C 0.15 TCGA-FA-A4BB-01 20 865839 865839 G A ANGPT4 Silent p.R239R 0.15 TCGA-FA-A4BB-01 21 33747729 33747731 AAA - URB1 In_Frame_Del p.L244del 0.10 TCGA-FA-A4BB-01 21 34166724 34166724 T A C21orf62 Silent p.P3P 0.12 TCGA-FA-A4BB-01 21 39087049 39087049 G A KCNJ6 Silent p.N137N 0.12 TCGA-FA-A4BB-01 21 39673199 39673199 C T KCNJ15 3'UTR 0.06 TCGA-FA-A4BB-01 21 46595934 46595934 G A ADARB1 Silent p.A106A 0.14 TCGA-FA-A4BB-01 21 48069615 48069615 C T PRMT2 Silent p.D206D 0.15 TCGA-FA-A4BB-01 22 19808235 19808235 C T GNB1L Missense_Mutation p.G47D 0.15 deleterious(0) probably_damaging(0.999) TCGA-FA-A4BB-01 22 23223420 23223420 C T IGLV3-1 Silent p.L64L 0.13 TCGA-FA-A4BB-01 22 28193699 28193699 G A MN1 Missense_Mutation p.R945C 0.19 probably_damaging(0.996) TCGA-FA-A4BB-01 22 32015667 32015667 G A PISD Silent p.P353P 0.16 TCGA-FA-A4BB-01 22 42321456 42321456 G A TNFRSF13C Missense_Mutation p.P157L 0.38 deleterious(0) possibly_damaging(0.881) TCGA-FA-A4BB-01 22 43936220 43936220 G A EFCAB6 Silent p.N1222N 0.14 TCGA-FA-A4BB-01 22 50356733 50356733 T C PIM3 Silent p.P313P 0.14 TCGA-FA-A4BB-01 22 50887015 50887015 C T SBF1 Missense_Mutation p.R1703Q 0.15 tolerated(0.13) benign(0.324) TCGA-FA-A4BB-01 2 133542033 133542033 C A NCKAP5 Missense_Mutation p.S784I 0.12 deleterious(0.01) possibly_damaging(0.771) TCGA-FA-A4BB-01 2 51254998 51254998 C T NRXN1 Silent p.V138V 0.15 TCGA-FA-A4BB-01 2 70189266 70189266 G A ASPRV1 5'UTR 0.12 TCGA-FA-A4BB-01 2 89161462 89161462 C G IGKC 5'Flank 0.12 TCGA-FA-A4BB-01 2 96810531 96810531 C T DUSP2 Missense_Mutation p.R160H 0.12 tolerated(0.54) benign(0.001) TCGA-FA-A4BB-01 3 101578255 101578258 AGTT - NFKBIZ 3'UTR 0.11 TCGA-FA-A4BB-01 3 105495385 105495385 G A CBLB Nonsense_Mutation p.R141* 0.17 TCGA-FA-A4BB-01 3 128780664 128780664 G A GP9 Missense_Mutation p.A28T 0.24 tolerated(0.38) benign(0.131) TCGA-FA-A4BB-01 3 130119961 130119961 A G COL6A5 Missense_Mutation p.R1360G 0.13 tolerated(0.1) possibly_damaging(0.597) TCGA-FA-A4BB-01 3 13427859 13427859 G A NUP210 Silent p.L245L 0.15 TCGA-FA-A4BB-01 3 142509859 142509859 A G TRPC1 Splice_Site p.X433_splice 0.12 TCGA-FA-A4BB-01 3 148863160 148863160 A G HPS3 Silent p.G330G 0.10 TCGA-FA-A4BB-01 3 158980510 158980510 C A IQCJ Intron 0.07 TCGA-FA-A4BB-01 3 159998476 159998476 G A IFT80 Missense_Mutation p.T548I 0.11 deleterious(0.01) probably_damaging(0.974) TCGA-FA-A4BB-01 3 169684632 169684632 A G SEC62 Missense_Mutation p.K8E 0.10 deleterious(0.01) benign(0.045) TCGA-FA-A4BB-01 3 193023457 193023457 C T ATP13A5 Missense_Mutation p.A857T 0.12 deleterious(0) probably_damaging(0.981) TCGA-FA-A4BB-01 3 194081533 194081533 G A LRRC15 Silent p.I86I 0.06 TCGA-FA-A4BB-01 3 50154752 50154752 G A RBM5 Missense_Mutation p.M754I 0.11 deleterious(0) possibly_damaging(0.785) TCGA-FA-A4BB-01 3 52188399 52188399 G A POC1A 5'UTR 0.18 TCGA-FA-A4BB-01 4 125590820 125590820 C A ANKRD50 Silent p.V1204V 0.16 TCGA-FA-A4BB-01 4 170616831 170616831 T G CLCN3 Missense_Mutation p.F335L 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-FA-A4BB-01 4 175565116 175565116 G A GLRA3 Missense_Mutation p.P406S 0.10 tolerated(0.15) benign(0.001) TCGA-FA-A4BB-01 4 48503658 48503658 C T FRYL Silent p.T2858T 0.06 TCGA-FA-A4BB-01 4 89618989 89618989 G A NAP1L5 5'UTR 0.10 TCGA-FA-A4BB-01 5 140188455 140188455 C T PCDHA4 Silent p.N561N 0.21 TCGA-FA-A4BB-01 5 140725076 140725076 C T PCDHGA3 Silent p.T492T 0.13 TCGA-FA-A4BB-01 5 158267047 158267047 C A EBF1 Missense_Mutation p.R209L 0.15 deleterious(0.01) probably_damaging(0.97) TCGA-FA-A4BB-01 5 70860724 70860724 C A BDP1 3'UTR 0.11 TCGA-FA-A4BB-01 5 77473178 77473178 A C AP3B1 Nonsense_Mutation p.L342* 0.09 TCGA-FA-A4BB-01 6 131895366 131895366 T G ARG1 Intron 0.16 TCGA-FA-A4BB-01 6 151914338 151914338 C T CCDC170 Nonsense_Mutation p.R464* 0.13 TCGA-FA-A4BB-01 6 27114250 27114250 G A HIST1H2BK Missense_Mutation p.H110Y 0.12 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-FA-A4BB-01 6 27218871 27218871 C T PRSS16 Silent p.A214A 0.32 TCGA-FA-A4BB-01 6 31324484 31324484 G C HLA-B Nonsense_Mutation p.Y108* 0.11 TCGA-FA-A4BB-01 6 33160034 33160034 C T COL11A2 5'UTR 0.11 TCGA-FA-A4BB-01 6 41900186 41900186 G A BYSL Silent p.L352L 0.12 TCGA-FA-A4BB-01 6 49928117 49928117 T A DEFB114 Missense_Mutation p.Y33F 0.18 tolerated_low_confidence(0.91) benign(0) TCGA-FA-A4BB-01 7 100373327 100373327 C A ZAN Missense_Mutation p.Q2021K 0.11 unknown(0) TCGA-FA-A4BB-01 7 11676123 11676123 C T THSD7A Missense_Mutation p.R219H 0.13 deleterious(0) probably_damaging(1) TCGA-FA-A4BB-01 7 116960628 116960628 T C WNT2 Silent p.L101L 0.07 TCGA-FA-A4BB-01 7 122634960 122634960 T C TAS2R16 Missense_Mutation p.I243M 0.08 deleterious(0.02) possibly_damaging(0.87) TCGA-FA-A4BB-01 7 129064932 129064932 C T AHCYL2 Missense_Mutation p.A553V 0.21 deleterious(0.03) probably_damaging(0.966) TCGA-FA-A4BB-01 7 138603173 138603173 G A KIAA1549 Missense_Mutation p.P400L 0.11 deleterious(0.03) benign(0.016) TCGA-FA-A4BB-01 7 140055490 140055490 G T SLC37A3 Missense_Mutation p.S199Y 0.14 tolerated(0.95) possibly_damaging(0.707) TCGA-FA-A4BB-01 7 17338946 17338946 C T AHR Nonsense_Mutation p.Q20* 0.07 TCGA-FA-A4BB-01 7 39247183 39247183 G T POU6F2 Nonsense_Mutation p.G159* 0.12 TCGA-FA-A4BB-01 7 98449156 98449156 C G TMEM130 Silent p.A298A 0.10 TCGA-FA-A4BB-01 8 103266652 103266652 G A UBR5 Nonsense_Mutation p.Q2760* 0.11 TCGA-FA-A4BB-01 8 105263836 105263836 G A RIMS2 Missense_Mutation p.V1280I 0.10 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-FA-A4BB-01 8 134233050 134233050 A G WISP1 Silent p.P192P 0.12 TCGA-FA-A4BB-01 8 140715129 140715129 C T KCNK9 Missense_Mutation p.R36H 0.05 tolerated(0.12) possibly_damaging(0.608) TCGA-FA-A4BB-01 8 68062162 68062162 A C CSPP1 Missense_Mutation p.K702T 0.12 deleterious(0.02) benign(0.098) TCGA-FA-A4BB-01 8 77896279 77896279 G A PEX2 Missense_Mutation p.P46S 0.08 deleterious(0.01) probably_damaging(0.966) TCGA-FA-A4BB-01 9 106864780 106864780 G A SMC2 Missense_Mutation p.A316T 0.10 tolerated(0.2) benign(0.014) TCGA-FA-A4BB-01 9 117848359 117848359 C T TNC Missense_Mutation p.E551K 0.15 deleterious(0.01) benign(0.297) TCGA-FA-A4BB-01 9 33442569 33442569 C A AQP3 Intron 0.16 TCGA-FA-A4BB-01 9 5300434 5300434 T G RLN2 Silent p.P74P 0.08 TCGA-FA-A4BB-01 9 77427256 77427256 G A TRPM6 Missense_Mutation p.R468C 0.07 deleterious(0.02) benign(0.223) TCGA-FA-A4BB-01 9 92220032 92220032 G A GADD45G 5'UTR 0.10 TCGA-FA-A4BB-01 9 96010064 96010064 C T WNK2 Silent p.A594A 0.19 TCGA-FA-A4BB-01 X 107923951 107923951 C A COL4A5 Missense_Mutation p.P1329T 0.23 benign(0.234) TCGA-FA-A4BB-01 X 154250876 154250876 C T F8 5'UTR 0.24 TCGA-FA-A4BB-01 X 71855062 71855062 G A PHKA1 Missense_Mutation p.R553C 0.30 tolerated(0.24) benign(0.026) TCGA-FA-A4BB-01 X 91132772 91132772 T A PCDH11X Silent p.P511P 0.22 TCGA-FA-A4XK-01 10 124352028 124352028 A G DMBT1 Missense_Mutation p.E806G 0.92 deleterious(0) unknown(0) TCGA-FA-A4XK-01 10 125557598 125557598 C T CPXM2 Silent p.E261E 0.28 TCGA-FA-A4XK-01 10 128193433 128193433 C T C10orf90 Silent p.P112P 0.40 TCGA-FA-A4XK-01 10 79565519 79565520 - A DLG5 Frame_Shift_Ins p.R1690Sfs*26 0.24 TCGA-FA-A4XK-01 11 108361845 108361845 C A KDELC2 Missense_Mutation p.L84F 0.17 tolerated(0.8) benign(0.006) TCGA-FA-A4XK-01 11 123811056 123811056 G A OR4D5 Missense_Mutation p.A245T 0.25 tolerated(1) benign(0.017) TCGA-FA-A4XK-01 11 55339726 55339726 G A OR4C16 Silent p.L41L 0.31 TCGA-FA-A4XK-01 11 61048187 61048187 G A VWCE Silent p.D411D 0.52 TCGA-FA-A4XK-01 11 86198437 86198437 C T ME3 Missense_Mutation p.V251M 0.63 deleterious(0.01) probably_damaging(0.927) TCGA-FA-A4XK-01 12 52648056 52648056 C T KRT121P RNA 0.30 TCGA-FA-A4XK-01 12 7169155 7169155 G A C1S 5'UTR 0.26 TCGA-FA-A4XK-01 13 31891810 31891810 C T B3GALTL Missense_Mutation p.T391M 0.35 deleterious(0) probably_damaging(0.997) TCGA-FA-A4XK-01 13 50588494 50588494 T C TRIM13 3'Flank 0.25 TCGA-FA-A4XK-01 14 106110951 106110951 G C IGHG2 Silent p.S59S 0.54 TCGA-FA-A4XK-01 14 106791037 106791037 C G IGHV3-30 Missense_Mutation p.A107P 0.47 tolerated_low_confidence(0.07) benign(0.013) TCGA-FA-A4XK-01 14 106815781 106815781 G C IGHV3-33 Missense_Mutation p.L98V 0.64 tolerated_low_confidence(0.07) benign(0.108) TCGA-FA-A4XK-01 14 106815859 106815859 A T IGHV3-33 Missense_Mutation p.Y72N 0.71 tolerated_low_confidence(0.5) benign(0.003) TCGA-FA-A4XK-01 14 106815923 106815923 G C IGHV3-33 Missense_Mutation p.S50R 0.69 tolerated_low_confidence(0.05) benign(0.008) TCGA-FA-A4XK-01 14 107170127 107170127 G C IGHV1-69 Missense_Mutation p.A52G 0.15 tolerated(0.3) benign(0.005) TCGA-FA-A4XK-01 14 107178980 107178980 A G IGHV2-70 Missense_Mutation p.L66P 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-FA-A4XK-01 14 107179081 107179081 T A IGHV2-70 Missense_Mutation p.K32N 0.13 deleterious(0) probably_damaging(0.947) TCGA-FA-A4XK-01 14 61550378 61550378 G A SLC38A6 Missense_Mutation p.R505H 0.64 unknown(0) TCGA-FA-A4XK-01 14 67243183 67243183 T G GPHN Missense_Mutation p.L49V 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-FA-A4XK-01 14 80677662 80677662 G A DIO2 Missense_Mutation p.R52W 0.45 deleterious(0) probably_damaging(0.99) TCGA-FA-A4XK-01 14 99642463 99642463 A G BCL11B Missense_Mutation p.L237P 0.34 deleterious(0) probably_damaging(0.999) TCGA-FA-A4XK-01 15 41826971 41826971 A G RPAP1 Missense_Mutation p.L235P 0.35 deleterious(0) probably_damaging(0.993) TCGA-FA-A4XK-01 15 78894447 78894447 G A CHRNA3 Silent p.S179S 0.35 TCGA-FA-A4XK-01 16 16248757 16248757 C T ABCC6 Silent p.L1338L 0.36 TCGA-FA-A4XK-01 16 55890347 55890347 G A CES5A Missense_Mutation p.P385L 0.69 tolerated(0.11) benign(0.392) TCGA-FA-A4XK-01 17 39661359 39661359 A G KRT13 Silent p.P148P 0.32 TCGA-FA-A4XK-01 17 4851557 4851557 C T PFN1 Splice_Site p.X44_splice 0.45 TCGA-FA-A4XK-01 17 48674136 48674136 C T CACNA1G Missense_Mutation p.P1037L 0.33 deleterious(0.04) benign(0.126) TCGA-FA-A4XK-01 17 73654377 73654377 C T RECQL5 Splice_Site p.X383_splice 0.33 TCGA-FA-A4XK-01 17 76354835 76354835 C A SOCS3 Silent p.V114V 0.53 TCGA-FA-A4XK-01 17 79214814 79214814 T G C17orf89 Nonstop_Mutation p.*75Eext*4 0.39 TCGA-FA-A4XK-01 17 79214839 79214839 T C C17orf89 3'UTR 0.42 TCGA-FA-A4XK-01 17 8661820 8661820 A C SPDYE4 5'UTR 0.45 TCGA-FA-A4XK-01 19 1046827 1046827 T C ABCA7 Missense_Mutation p.L550P 0.29 deleterious(0) probably_damaging(0.997) TCGA-FA-A4XK-01 19 11944955 11944955 T C ZNF440 3'UTR 0.36 TCGA-FA-A4XK-01 19 16860860 16860860 C T NWD1 Silent p.C469C 0.28 TCGA-FA-A4XK-01 19 41932420 41932420 G A B3GNT8 Silent p.S88S 0.24 TCGA-FA-A4XK-01 19 42384803 42384803 G T CD79A Nonsense_Mutation p.E189* 0.39 TCGA-FA-A4XK-01 19 9047271 9047271 G A MUC16 Missense_Mutation p.P11454S 0.38 benign(0) TCGA-FA-A4XK-01 1 110171028 110171028 T A AMPD2 Missense_Mutation p.Y494N 0.42 deleterious(0) probably_damaging(1) TCGA-FA-A4XK-01 1 12387807 12387807 C T VPS13D Missense_Mutation p.A2698V 0.44 benign(0.04) TCGA-FA-A4XK-01 1 149857667 149857667 A G HIST2H2BE 3'UTR 0.39 TCGA-FA-A4XK-01 1 153719461 153719461 G A INTS3 Missense_Mutation p.R116H 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-FA-A4XK-01 1 155207245 155207245 G A GBA Nonsense_Mutation p.R296* 0.33 TCGA-FA-A4XK-01 1 1573946 1573946 G A CDK11B Missense_Mutation p.R423W 0.37 unknown(0) TCGA-FA-A4XK-01 1 175116191 175116191 G T TNN Missense_Mutation p.R1295M 0.35 deleterious(0.03) unknown(0) TCGA-FA-A4XK-01 1 203274847 203274847 T G BTG2 Missense_Mutation p.F38C 0.39 deleterious(0) probably_damaging(1) TCGA-FA-A4XK-01 1 2075972 2075972 G A PRKCZ Intron 0.78 TCGA-FA-A4XK-01 1 211256200 211256200 G T KCNH1 Missense_Mutation p.S160R 0.39 tolerated(0.86) benign(0.004) TCGA-FA-A4XK-01 1 48694880 48694880 A G SLC5A9 Intron 0.23 TCGA-FA-A4XK-01 20 49575719 49575719 T A MOCS3 Missense_Mutation p.Y114N 0.34 deleterious(0) benign(0.152) TCGA-FA-A4XK-01 20 49575721 49575721 T C MOCS3 Silent p.Y114Y 0.33 TCGA-FA-A4XK-01 21 41414420 41414420 G A DSCAM Missense_Mutation p.T1855M 0.38 deleterious(0) probably_damaging(0.932) TCGA-FA-A4XK-01 22 22385590 22385590 T C IGLV4-69 Missense_Mutation p.S27P 0.34 tolerated(1) benign(0.004) TCGA-FA-A4XK-01 22 22385614 22385614 G A IGLV4-69 Missense_Mutation p.G35R 0.42 deleterious(0.02) possibly_damaging(0.637) TCGA-FA-A4XK-01 22 22385639 22385639 C G IGLV4-69 Missense_Mutation p.T43S 0.41 deleterious(0.04) possibly_damaging(0.873) TCGA-FA-A4XK-01 22 22385718 22385718 G A IGLV4-69 Silent p.K69K 0.23 TCGA-FA-A4XK-01 22 22385726 22385726 G T IGLV4-69 Missense_Mutation p.S72I 0.43 deleterious(0) benign(0.275) TCGA-FA-A4XK-01 22 22385741 22385741 G C IGLV4-69 Missense_Mutation p.S77T 0.31 tolerated(0.36) benign(0.021) TCGA-FA-A4XK-01 22 22385764 22385764 C G IGLV4-69 Missense_Mutation p.R85G 0.25 deleterious(0.01) benign(0.089) TCGA-FA-A4XK-01 22 22385800 22385800 C G IGLV4-69 Missense_Mutation p.L97V 0.25 deleterious(0) probably_damaging(0.995) TCGA-FA-A4XK-01 22 22516784 22516784 G A IGLV4-60 Silent p.V24V 0.53 TCGA-FA-A4XK-01 22 22516785 22516785 C G IGLV4-60 Missense_Mutation p.L25V 0.50 tolerated(0.15) benign(0.114) TCGA-FA-A4XK-01 22 22516840 22516840 G C IGLV4-60 Missense_Mutation p.C43S 0.50 deleterious(0.01) possibly_damaging(0.859) TCGA-FA-A4XK-01 22 22516861 22516861 G A IGLV4-60 Missense_Mutation p.S50N 0.52 tolerated(0.16) benign(0.341) TCGA-FA-A4XK-01 22 22517066 22517066 T A IGLV4-60 Missense_Mutation p.S118R 0.64 deleterious(0.01) possibly_damaging(0.635) TCGA-FA-A4XK-01 22 23243424 23243424 G A IGLC2 Silent p.T90T 0.38 TCGA-FA-A4XK-01 22 23248780 23248780 G A IGLC3 Silent p.T90T 0.14 TCGA-FA-A4XK-01 22 23248904 23248904 C T IGLC3 3'UTR 0.24 TCGA-FA-A4XK-01 2 103310906 103310906 G A SLC9A2 Missense_Mutation p.D487N 0.45 tolerated(0.37) benign(0.005) TCGA-FA-A4XK-01 2 1459995 1459995 G A TPO Missense_Mutation p.G254R 0.36 tolerated(0.53) benign(0.022) TCGA-FA-A4XK-01 2 176972104 176972104 C T HOXD11 Silent p.C7C 0.29 TCGA-FA-A4XK-01 2 179400129 179400129 C T TTN Missense_Mutation p.R33738H 0.56 TCGA-FA-A4XK-01 2 191300917 191300917 A C MFSD6 Silent p.I54I 0.44 TCGA-FA-A4XK-01 2 238485920 238485920 C T RAB17 Missense_Mutation p.E139K 0.37 tolerated(0.98) benign(0.038) TCGA-FA-A4XK-01 2 27346791 27346791 T C ABHD1 5'UTR 0.40 TCGA-FA-A4XK-01 2 68592512 68592512 A T PLEK Missense_Mutation p.Y10F 0.27 tolerated(1) benign(0.006) TCGA-FA-A4XK-01 2 80875123 80875123 G A CTNNA2 3'UTR 0.52 TCGA-FA-A4XK-01 2 88387391 88387391 C T SMYD1 Missense_Mutation p.R109C 0.33 deleterious(0) probably_damaging(1) TCGA-FA-A4XK-01 2 97507820 97507821 - G ANKRD23 Frame_Shift_Ins p.R93Qfs*4 0.35 TCGA-FA-A4XK-01 3 119892302 119892302 C A GPR156 Missense_Mutation p.A317S 0.33 deleterious(0.05) possibly_damaging(0.706) TCGA-FA-A4XK-01 3 122247336 122247347 TAGCCTGCATGC AAATA PARP9 Frame_Shift_Del p.G810Vfs*25 0.28 TCGA-FA-A4XK-01 3 138762875 138762875 C T PRR23C Silent p.G196G 0.41 TCGA-FA-A4XK-01 3 15452643 15452643 C T METTL6 Intron 0.33 TCGA-FA-A4XK-01 3 28476649 28476649 T G ZCWPW2 Silent p.T127T 0.34 TCGA-FA-A4XK-01 3 47277563 47277563 G T KIF9 Silent p.I726I 0.37 TCGA-FA-A4XK-01 3 52273084 52273084 G T TWF2 5'UTR 0.08 TCGA-FA-A4XK-01 3 88041308 88041308 G A HTR1F 3'UTR 0.39 TCGA-FA-A4XK-01 4 126242053 126242053 T G FAT4 Missense_Mutation p.V1496G 0.28 probably_damaging(0.992) TCGA-FA-A4XK-01 4 154625039 154625039 A T TLR2 Missense_Mutation p.D327V 0.39 deleterious(0) probably_damaging(1) TCGA-FA-A4XK-01 4 155457891 155457891 T A PLRG1 Missense_Mutation p.E497D 0.31 tolerated(0.16) possibly_damaging(0.485) TCGA-FA-A4XK-01 4 178352693 178352693 T C AGA 3'UTR 0.30 TCGA-FA-A4XK-01 4 52938302 52938302 G T SPATA18 Missense_Mutation p.E246D 0.39 deleterious(0.01) probably_damaging(0.953) TCGA-FA-A4XK-01 4 66467586 66467586 A G EPHA5 Missense_Mutation p.V228A 0.36 deleterious(0.04) probably_damaging(0.981) TCGA-FA-A4XK-01 4 68424454 68424454 C T STAP1 5'UTR 0.30 TCGA-FA-A4XK-01 4 73205310 73205310 G A ADAMTS3 Silent p.N254N 0.38 TCGA-FA-A4XK-01 4 87797498 87797498 G A RP11-397E7.2 RNA 0.44 TCGA-FA-A4XK-01 5 135508192 135508192 G A SMAD5 Missense_Mutation p.R282H 0.31 deleterious(0.01) benign(0.402) TCGA-FA-A4XK-01 5 173416306 173416306 C T C5orf47 Missense_Mutation p.R14C 0.38 deleterious(0) probably_damaging(0.942) TCGA-FA-A4XK-01 5 6312581 6312581 T G CTD-2324F15.2 RNA 0.35 TCGA-FA-A4XK-01 5 82834316 82834316 T C VCAN Missense_Mutation p.F1832L 0.38 tolerated(0.27) benign(0.037) TCGA-FA-A4XK-01 6 106543518 106543518 T A PRDM1 Missense_Mutation p.I107K 0.49 deleterious(0) probably_damaging(0.994) TCGA-FA-A4XK-01 6 111654527 111654527 T C REV3L Missense_Mutation p.N2575S 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-FA-A4XK-01 6 26217398 26217398 C G HIST1H2AE Missense_Mutation p.L66V 0.43 deleterious_low_confidence(0.01) benign(0.005) TCGA-FA-A4XK-01 6 31637636 31637636 C T CSNK2B Missense_Mutation p.P194L 0.45 deleterious(0.02) possibly_damaging(0.578) TCGA-FA-A4XK-01 6 3284179 3284179 G A SLC22A23 Missense_Mutation p.S537F 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-FA-A4XK-01 6 41704556 41704556 G A PGC 3'UTR 0.08 TCGA-FA-A4XK-01 6 43014085 43014085 G A CUL7 Missense_Mutation p.P934L 0.31 deleterious(0.04) benign(0.131) TCGA-FA-A4XK-01 6 46766884 46766884 G T MEP1A Silent p.T76T 0.31 TCGA-FA-A4XK-01 6 50786581 50786581 G T TFAP2B 5'UTR 0.42 TCGA-FA-A4XK-01 6 70042873 70042873 T C BAI3 Missense_Mutation p.L1054P 0.31 tolerated(0.12) probably_damaging(0.999) TCGA-FA-A4XK-01 7 100958542 100958542 T G RABL5 Missense_Mutation p.K144T 0.36 tolerated(0.54) benign(0.005) TCGA-FA-A4XK-01 7 107323660 107323660 T G SLC26A4 Missense_Mutation p.I260S 0.23 deleterious(0) possibly_damaging(0.555) TCGA-FA-A4XK-01 7 117368251 117368251 C T CTTNBP2 Missense_Mutation p.R1316H 0.28 tolerated(0.71) benign(0.001) TCGA-FA-A4XK-01 7 141756637 141756637 G A MGAM Silent p.T1196T 0.22 TCGA-FA-A4XK-01 7 1513823 1513823 G A INTS1 Missense_Mutation p.S1937F 0.21 deleterious(0.02) probably_damaging(0.934) TCGA-FA-A4XK-01 7 18535826 18535826 T A HDAC9 5'Flank 0.22 TCGA-FA-A4XK-01 7 31132339 31132339 A G ADCYAP1R1 Missense_Mutation p.S346G 0.64 deleterious(0) probably_damaging(0.966) TCGA-FA-A4XK-01 7 31132340 31132340 G C ADCYAP1R1 Missense_Mutation p.S346T 0.66 deleterious(0) probably_damaging(0.966) TCGA-FA-A4XK-01 7 34192998 34192998 G C BMPER 3'UTR 0.38 TCGA-FA-A4XK-01 7 80433481 80433481 G T SEMA3C Missense_Mutation p.L248M 0.32 deleterious(0.01) benign(0.167) TCGA-FA-A4XK-01 7 81601100 81601100 T C CACNA2D1 Missense_Mutation p.K712E 0.21 tolerated(0.76) benign(0.005) TCGA-FA-A4XK-01 8 128750844 128750844 C T MYC Silent p.N127N 0.41 TCGA-FA-A4XK-01 8 141542125 141542125 G A AGO2 3'UTR 0.36 TCGA-FA-A4XK-01 8 145113217 145113217 C T OPLAH Missense_Mutation p.G292S 0.27 deleterious(0) probably_damaging(0.996) TCGA-FA-A4XK-01 8 53555330 53555330 C A RB1CC1 Nonsense_Mutation p.E1344* 0.35 TCGA-FA-A4XK-01 8 54142312 54142312 C T OPRK1 Missense_Mutation p.V230I 0.35 tolerated(0.1) probably_damaging(0.999) TCGA-FA-A4XK-01 8 55372347 55372347 C T SOX17 Missense_Mutation p.T346M 0.44 tolerated(0.15) benign(0.282) TCGA-FA-A4XK-01 8 77690572 77690572 T C ZFHX4 Silent p.T1074T 0.37 TCGA-FA-A4XK-01 9 104079734 104079734 G T LPPR1 Missense_Mutation p.A301S 0.30 tolerated(0.93) benign(0.079) TCGA-FA-A4XK-01 9 105767317 105767317 A C CYLC2 Missense_Mutation p.K135T 0.27 tolerated(0.12) benign(0.006) TCGA-FA-A4XK-01 9 136577806 136577806 C T SARDH Silent p.G421G 0.43 TCGA-FA-A4XK-01 9 19786871 19786871 T C SLC24A2 5'UTR 0.42 TCGA-FA-A4XK-01 9 99581542 99581542 T C ZNF782 Missense_Mutation p.K255E 0.28 tolerated(0.15) benign(0.028) TCGA-FA-A4XK-01 X 57337038 57337038 G A FAAH2 Silent p.A96A 0.87 TCGA-FA-A6HN-01 10 101473335 101473335 T G COX15 3'UTR 0.24 TCGA-FA-A6HN-01 10 104157819 104157819 T A NFKB2 Missense_Mutation p.L248Q 0.14 deleterious(0) probably_damaging(1) TCGA-FA-A6HN-01 10 105923874 105923874 G A WDR96 Missense_Mutation p.T1075M 0.30 tolerated(0.17) benign(0.094) TCGA-FA-A6HN-01 10 16883024 16883024 T - CUBN Frame_Shift_Del p.N3229Mfs*32 0.13 TCGA-FA-A6HN-01 10 21823450 21823450 G A MLLT10 Splice_Site 0.33 TCGA-FA-A6HN-01 10 24909112 24909112 C T ARHGAP21 Missense_Mutation p.R571Q 0.23 tolerated(0.16) possibly_damaging(0.898) TCGA-FA-A6HN-01 10 34626206 34626206 C T PARD3 Missense_Mutation p.G856S 0.16 tolerated_low_confidence(0.23) possibly_damaging(0.564) TCGA-FA-A6HN-01 10 51050079 51050079 C G PARG Missense_Mutation p.E335Q 0.20 tolerated(0.34) possibly_damaging(0.896) TCGA-FA-A6HN-01 10 55698632 55698632 G A PCDH15 Nonsense_Mutation p.R1106* 0.23 TCGA-FA-A6HN-01 10 6104051 6104051 C T IL2RA Missense_Mutation p.E22K 0.17 deleterious(0.03) benign(0.23) TCGA-FA-A6HN-01 10 71880315 71880315 G A AIFM2 Missense_Mutation p.S152L 0.14 tolerated(0.05) benign(0.426) TCGA-FA-A6HN-01 10 81930597 81930597 T A ANXA11 Missense_Mutation p.T44S 0.33 tolerated(0.9) unknown(0) TCGA-FA-A6HN-01 10 90537944 90537944 A G LIPN Missense_Mutation p.D381G 0.22 deleterious(0) probably_damaging(0.999) TCGA-FA-A6HN-01 11 107729425 107729425 G T SLC35F2 Missense_Mutation p.F23L 0.24 tolerated(0.46) benign(0) TCGA-FA-A6HN-01 11 1619234 1619234 C T KRTAP5-2 Missense_Mutation p.G83S 0.21 tolerated_low_confidence(0.12) unknown(0) TCGA-FA-A6HN-01 11 1629430 1629431 - C KRTAP5-3 Frame_Shift_Ins p.S63Lfs*71 0.18 TCGA-FA-A6HN-01 11 17167456 17167456 T G PIK3C2A Missense_Mutation p.K532Q 0.19 tolerated(0.19) possibly_damaging(0.493) TCGA-FA-A6HN-01 11 4936072 4936072 G A OR51G2 Silent p.P274P 0.28 TCGA-FA-A6HN-01 11 5410941 5410941 T C OR51M1 Missense_Mutation p.Y105H 0.25 tolerated(0.07) benign(0.033) TCGA-FA-A6HN-01 11 60699343 60699343 T C TMEM132A Missense_Mutation p.I401T 0.19 deleterious(0) benign(0.138) TCGA-FA-A6HN-01 11 64645546 64645546 C T EHD1 Missense_Mutation p.A131T 0.17 tolerated(0.25) benign(0.047) TCGA-FA-A6HN-01 11 64645661 64645661 G - EHD1 Frame_Shift_Del p.T93Pfs*111 0.17 TCGA-FA-A6HN-01 11 65416900 65416900 C T SIPA1 Missense_Mutation p.A825V 0.20 tolerated(0.07) benign(0.008) TCGA-FA-A6HN-01 11 75136555 75136555 G A KLHL35 Silent p.N419N 0.11 TCGA-FA-A6HN-01 11 87024484 87024484 G A TMEM135 Silent p.L318L 0.20 TCGA-FA-A6HN-01 11 87024503 87024503 G A TMEM135 Missense_Mutation p.D325N 0.17 deleterious(0.04) possibly_damaging(0.661) TCGA-FA-A6HN-01 11 89059934 89059934 G T NOX4 Missense_Mutation p.S576Y 0.22 deleterious(0) probably_damaging(0.984) TCGA-FA-A6HN-01 11 89069055 89069055 C A NOX4 Missense_Mutation p.R525L 0.20 deleterious(0.01) benign(0.396) TCGA-FA-A6HN-01 11 94278849 94278849 G A FUT4 Missense_Mutation p.R517Q 0.25 tolerated(0.74) benign(0.012) TCGA-FA-A6HN-01 12 111744875 111744875 G A CUX2 Missense_Mutation p.D337N 0.20 deleterious(0.03) possibly_damaging(0.642) TCGA-FA-A6HN-01 12 112082105 112082105 C T BRAP Silent p.E559E 0.25 TCGA-FA-A6HN-01 12 14923620 14923620 C G HIST4H4 3'UTR 0.17 TCGA-FA-A6HN-01 12 14923952 14923952 G T HIST4H4 Missense_Mutation p.L23M 0.18 deleterious(0) possibly_damaging(0.735) TCGA-FA-A6HN-01 12 26277503 26277503 G A BHLHE41 Silent p.S25S 0.25 TCGA-FA-A6HN-01 12 4383364 4383364 C T CCND2 Missense_Mutation p.P53L 0.15 deleterious(0) benign(0.339) TCGA-FA-A6HN-01 12 60168856 60168856 T - SLC16A7 Frame_Shift_Del p.F262Lfs*39 0.18 TCGA-FA-A6HN-01 12 65514924 65514924 G A WIF1 Silent p.S16S 0.18 TCGA-FA-A6HN-01 12 7061240 7061240 G C PTPN6 Missense_Mutation p.V76L 0.13 deleterious(0.03) possibly_damaging(0.531) TCGA-FA-A6HN-01 12 7173133 7173133 G C C1S Missense_Mutation p.D244H 0.12 tolerated(0.11) possibly_damaging(0.756) TCGA-FA-A6HN-01 12 75436936 75436936 G A KCNC2 Silent p.N622N 0.21 TCGA-FA-A6HN-01 12 81769580 81769580 G A PPFIA2 Missense_Mutation p.R376W 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-FA-A6HN-01 12 83081350 83081350 G A TMTC2 5'UTR 0.11 TCGA-FA-A6HN-01 12 9266020 9266020 C T A2M Missense_Mutation p.G69E 0.19 tolerated(1) benign(0.001) TCGA-FA-A6HN-01 12 94543056 94543056 C T PLXNC1 Silent p.S103S 0.14 TCGA-FA-A6HN-01 13 114530106 114530106 C T GAS6 Missense_Mutation p.S447N 0.15 tolerated(0.09) probably_damaging(0.925) TCGA-FA-A6HN-01 13 20641392 20641392 G A ZMYM2 Silent p.K1105K 0.24 TCGA-FA-A6HN-01 13 21237643 21237643 G A IFT88 Missense_Mutation p.R701H 0.19 deleterious(0.01) possibly_damaging(0.793) TCGA-FA-A6HN-01 13 32376518 32376518 C G RXFP2 Missense_Mutation p.D747E 0.25 tolerated_low_confidence(0.21) benign(0.015) TCGA-FA-A6HN-01 13 41556242 41556242 G A ELF1 5'UTR 0.25 TCGA-FA-A6HN-01 13 99508230 99508230 C T DOCK9 Silent p.S1251S 0.19 TCGA-FA-A6HN-01 14 105954680 105954681 CC - CRIP1 Frame_Shift_Del p.P50Lfs*14 0.17 TCGA-FA-A6HN-01 14 106320618 106320618 G A IGHM Silent p.L398L 0.19 TCGA-FA-A6HN-01 14 106320671 106320671 C G IGHM Missense_Mutation p.S380T 0.14 tolerated(0.33) possibly_damaging(0.491) TCGA-FA-A6HN-01 14 106322024 106322024 G C IGHM Missense_Mutation p.N100K 0.32 tolerated(0.83) benign(0.003) TCGA-FA-A6HN-01 14 106322120 106322120 G A IGHM Silent p.T68T 0.33 TCGA-FA-A6HN-01 14 106322169 106322169 C T IGHM Missense_Mutation p.S52N 0.29 tolerated(0.97) benign(0) TCGA-FA-A6HN-01 14 106322171 106322171 G A IGHM Silent p.S51S 0.28 TCGA-FA-A6HN-01 14 106330070 106330070 G A IGHJ5 Silent p.N1N 0.31 TCGA-FA-A6HN-01 14 106791451 106791451 C T IGHV3-30 Silent p.E2E 0.08 TCGA-FA-A6HN-01 14 107179087 107179087 C T IGHV2-70 Silent p.L30L 0.24 TCGA-FA-A6HN-01 14 23504041 23504041 C A PSMB5 Missense_Mutation p.G17V 0.16 tolerated(0.57) probably_damaging(0.972) TCGA-FA-A6HN-01 14 35871121 35871121 C T NFKBIA 3'UTR 0.22 TCGA-FA-A6HN-01 14 35871864 35871864 G - NFKBIA Frame_Shift_Del p.C215Vfs*23 0.14 TCGA-FA-A6HN-01 14 35873721 35873721 G A NFKBIA Nonsense_Mutation p.Q44* 0.21 TCGA-FA-A6HN-01 14 45433254 45433254 G A FAM179B Missense_Mutation p.G544S 0.15 deleterious(0.01) benign(0.31) TCGA-FA-A6HN-01 15 22473354 22473354 G A IGHV4OR15-8 5'Flank 0.07 TCGA-FA-A6HN-01 15 24926423 24926423 A G NPAP1 3'UTR 0.22 TCGA-FA-A6HN-01 15 24928355 24928355 G A NPAP1 3'UTR 0.27 TCGA-FA-A6HN-01 15 34628685 34628685 G A SLC12A6 Missense_Mutation p.A66V 0.14 deleterious_low_confidence(0.02) benign(0.007) TCGA-FA-A6HN-01 15 42003386 42003386 C T MGA Nonsense_Mutation p.Q975* 0.15 TCGA-FA-A6HN-01 15 42139859 42139859 C A PLA2G4B Missense_Mutation p.T947K 0.27 tolerated(0.05) benign(0.283) TCGA-FA-A6HN-01 15 42720256 42720256 G A ZNF106 Missense_Mutation p.A1630V 0.06 tolerated(0.23) benign(0.026) TCGA-FA-A6HN-01 15 64410372 64410372 G A SNX1 Missense_Mutation p.A110T 0.24 tolerated(0.26) benign(0.01) TCGA-FA-A6HN-01 15 70960860 70960860 T C UACA Silent p.K721K 0.17 TCGA-FA-A6HN-01 15 74426853 74426853 G T ISLR2 Missense_Mutation p.E586D 0.10 deleterious(0.01) possibly_damaging(0.82) TCGA-FA-A6HN-01 16 10971083 10971083 G A CIITA 5'UTR 0.32 TCGA-FA-A6HN-01 16 18573368 18573368 G A NOMO2 5'UTR 0.22 TCGA-FA-A6HN-01 16 2203434 2203434 C T RAB26 3'UTR 0.12 TCGA-FA-A6HN-01 16 29819056 29819064 AGCGCAAGG - MAZ In_Frame_Del p.K317_D320delinsN 0.22 TCGA-FA-A6HN-01 16 30198463 30198463 C T CORO1A Silent p.S185S 0.20 TCGA-FA-A6HN-01 17 17106346 17106346 C G PLD6 Missense_Mutation p.R165T 0.20 tolerated(0.07) benign(0.038) TCGA-FA-A6HN-01 17 26688357 26688357 G C TMEM199 3'UTR 0.16 TCGA-FA-A6HN-01 17 34136543 34136543 C T TAF15 5'UTR 0.21 TCGA-FA-A6HN-01 17 40267789 40267789 G A KAT2A Silent p.Y609Y 0.17 TCGA-FA-A6HN-01 17 40474419 40474419 T A STAT3 Missense_Mutation p.D661V 0.15 tolerated(0.43) possibly_damaging(0.688) TCGA-FA-A6HN-01 17 45915662 45915662 C A SCRN2 Missense_Mutation p.A365S 0.28 deleterious(0.01) probably_damaging(0.945) TCGA-FA-A6HN-01 17 4711711 4711711 G A PLD2 Missense_Mutation p.R128Q 0.29 deleterious(0.04) possibly_damaging(0.466) TCGA-FA-A6HN-01 17 49281177 49281177 G A MBTD1 Silent p.S238S 0.24 TCGA-FA-A6HN-01 17 56408645 56408645 G C BZRAP1 5'Flank 0.17 TCGA-FA-A6HN-01 17 57917415 57917415 C T VMP1 3'UTR 0.21 TCGA-FA-A6HN-01 17 58227428 58227428 C T CA4 Silent p.S11S 0.09 TCGA-FA-A6HN-01 17 62045701 62045701 C T SCN4A Missense_Mutation p.V240M 0.07 deleterious(0) probably_damaging(0.999) TCGA-FA-A6HN-01 17 63221463 63221463 G A RGS9 Missense_Mutation p.R584K 0.17 deleterious_low_confidence(0) benign(0.174) TCGA-FA-A6HN-01 17 6607294 6607294 G A SLC13A5 Silent p.P150P 0.22 TCGA-FA-A6HN-01 17 67178333 67178333 G T ABCA10 Missense_Mutation p.F910L 0.19 tolerated(0.39) benign(0.001) TCGA-FA-A6HN-01 17 76045908 76045908 C T TNRC6C Silent p.N255N 0.40 TCGA-FA-A6HN-01 17 76355238 76355238 C T SOCS3 5'UTR 0.27 TCGA-FA-A6HN-01 18 58039885 58039885 A G MC4R 5'UTR 0.16 TCGA-FA-A6HN-01 19 12902672 12902681 ACACGACTAC - JUNB Frame_Shift_Del p.H30Nfs*3 0.19 TCGA-FA-A6HN-01 19 12903098 12903123 CGTCTACGCCGGCCCGGAGCCACCTC - JUNB Frame_Shift_Del p.V172Rfs*203 0.20 TCGA-FA-A6HN-01 19 15484046 15484046 C T AKAP8 Silent p.G159G 0.17 TCGA-FA-A6HN-01 19 16436027 16436027 C T KLF2 Missense_Mutation p.R26C 0.18 deleterious(0) benign(0.003) TCGA-FA-A6HN-01 19 16436775 16436775 G A KLF2 Missense_Mutation p.S275N 0.15 deleterious(0.02) unknown(0) TCGA-FA-A6HN-01 19 16436806 16436806 G C KLF2 Missense_Mutation p.K285N 0.26 deleterious(0) unknown(0) TCGA-FA-A6HN-01 19 16436833 16436833 C G KLF2 Silent p.R294R 0.27 TCGA-FA-A6HN-01 19 1912087 1912087 C T ADAT3 Missense_Mutation p.S14L 0.18 tolerated_low_confidence(0.19) benign(0.001) TCGA-FA-A6HN-01 19 22157028 22157028 C A ZNF208 Missense_Mutation p.A270S 0.15 tolerated(1) benign(0.002) TCGA-FA-A6HN-01 19 2476602 2476602 G A GADD45B Silent p.V40V 0.18 TCGA-FA-A6HN-01 19 3491793 3491793 G A DOHH Silent p.S202S 0.08 TCGA-FA-A6HN-01 19 37975034 37975034 T C ZNF570 Silent p.S170S 0.21 TCGA-FA-A6HN-01 19 44118178 44118178 T C SRRM5 Silent p.S635S 0.22 TCGA-FA-A6HN-01 19 46832549 46832549 C T HIF3A Missense_Mutation p.P509L 0.19 deleterious(0) possibly_damaging(0.82) TCGA-FA-A6HN-01 19 52131127 52131127 C T SIGLEC5 Silent p.P319P 0.19 TCGA-FA-A6HN-01 19 52941505 52941505 T C ZNF534 Silent p.H277H 0.22 TCGA-FA-A6HN-01 19 549011 549011 C T GZMM Silent p.S146S 0.12 TCGA-FA-A6HN-01 19 55645539 55645539 G A TNNT1 Silent p.P215P 0.22 TCGA-FA-A6HN-01 19 58117726 58117726 G A ZNF530 Missense_Mutation p.R278H 0.16 tolerated(0.65) benign(0.001) TCGA-FA-A6HN-01 19 6590875 6590875 G A CD70 Nonsense_Mutation p.Q47* 0.21 TCGA-FA-A6HN-01 19 9072256 9072256 G T MUC16 Missense_Mutation p.L5064I 0.15 unknown(0) TCGA-FA-A6HN-01 19 9868728 9868728 T C ZNF846 Missense_Mutation p.E342G 0.18 tolerated(0.22) possibly_damaging(0.754) TCGA-FA-A6HN-01 1 110607400 110607400 G A ALX3 Missense_Mutation p.P135S 0.21 tolerated(0.12) possibly_damaging(0.829) TCGA-FA-A6HN-01 1 12123609 12123609 C T TNFRSF8 5'UTR 0.28 TCGA-FA-A6HN-01 1 12123708 12123708 C T TNFRSF8 Missense_Mutation p.A18V 0.22 tolerated(0.07) benign(0.015) TCGA-FA-A6HN-01 1 149783507 149783507 G T HIST2H2BF Missense_Mutation p.S124R 0.17 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-FA-A6HN-01 1 149857760 149857760 G A HIST2H2BE 3'UTR 0.19 TCGA-FA-A6HN-01 1 149857873 149857873 C T HIST2H2BE Silent p.E106E 0.14 TCGA-FA-A6HN-01 1 149858111 149858111 C G HIST2H2BE Missense_Mutation p.G27A 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-FA-A6HN-01 1 151774688 151774688 C A LINGO4 Missense_Mutation p.D165Y 0.15 deleterious(0) possibly_damaging(0.659) TCGA-FA-A6HN-01 1 156347192 156347192 G A RHBG Silent p.L96L 0.17 TCGA-FA-A6HN-01 1 156737535 156737535 G A PRCC 5'UTR 0.20 TCGA-FA-A6HN-01 1 156737930 156737930 C T PRCC Missense_Mutation p.P123S 0.15 tolerated(0.29) unknown(0) TCGA-FA-A6HN-01 1 186039858 186039858 C A HMCN1 Missense_Mutation p.S2703Y 0.18 probably_damaging(0.998) TCGA-FA-A6HN-01 1 200843152 200843178 GGCGCGAAGGATCAGCTCAGCCTCCTC - GPR25 In_Frame_Del p.A330_S338del 0.24 TCGA-FA-A6HN-01 1 229730826 229730826 T G TAF5L Missense_Mutation p.N330H 0.49 deleterious(0.03) benign(0.081) TCGA-FA-A6HN-01 1 234744371 234744371 G T IRF2BP2 Missense_Mutation p.S290R 0.21 tolerated(0.09) benign(0.005) TCGA-FA-A6HN-01 1 236703874 236703874 A G LGALS8 Missense_Mutation p.N119S 0.17 deleterious(0.03) benign(0.444) TCGA-FA-A6HN-01 1 241032080 241032080 C T RGS7 Missense_Mutation p.A175T 0.16 tolerated(0.07) probably_damaging(0.994) TCGA-FA-A6HN-01 1 26644703 26644703 G A UBXN11 5'UTR 0.56 TCGA-FA-A6HN-01 1 51702419 51702419 G C RNF11 5'UTR 0.31 TCGA-FA-A6HN-01 1 57111005 57111005 G A PRKAA2 5'UTR 0.10 TCGA-FA-A6HN-01 1 6189098 6189098 T A CHD5 Missense_Mutation p.N1140I 0.15 deleterious(0.03) possibly_damaging(0.791) TCGA-FA-A6HN-01 1 6504644 6504644 C T ESPN Missense_Mutation p.P365L 0.23 deleterious(0.01) possibly_damaging(0.716) TCGA-FA-A6HN-01 1 74670119 74670119 A C FPGT Missense_Mutation p.I130L 0.12 deleterious(0) probably_damaging(0.967) TCGA-FA-A6HN-01 1 76228440 76228440 A G ACADM Missense_Mutation p.K424E 0.18 deleterious(0.03) benign(0.01) TCGA-FA-A6HN-01 1 82415874 82415874 G T LPHN2 Silent p.V400V 0.21 TCGA-FA-A6HN-01 20 13107302 13107302 C T SPTLC3 Missense_Mutation p.P406L 0.21 deleterious(0.01) benign(0.103) TCGA-FA-A6HN-01 20 1350167 1350167 G A FKBP1A 3'UTR 0.25 TCGA-FA-A6HN-01 20 23016253 23016253 G A SSTR4 Missense_Mutation p.A45T 0.29 tolerated(0.19) benign(0.002) TCGA-FA-A6HN-01 20 23016714 23016714 C A SSTR4 Nonsense_Mutation p.C198* 0.36 TCGA-FA-A6HN-01 20 4681411 4681411 A G PRNP 3'UTR 0.20 TCGA-FA-A6HN-01 20 51589826 51589826 G A TSHZ2 5'UTR 0.20 TCGA-FA-A6HN-01 22 30163427 30163427 C T UQCR10 Silent p.L14L 0.15 TCGA-FA-A6HN-01 22 31741415 31741415 C T PATZ1 Silent p.V58V 0.10 TCGA-FA-A6HN-01 22 39917610 39917610 G A ATF4 Missense_Mutation p.A54T 0.24 deleterious(0) possibly_damaging(0.728) TCGA-FA-A6HN-01 22 45241156 45241156 G C ARHGAP8 Missense_Mutation p.D324H 0.27 deleterious(0.04) benign(0.105) TCGA-FA-A6HN-01 2 10008516 10008516 C G TAF1B Missense_Mutation p.H171D 0.18 tolerated(0.66) benign(0.014) TCGA-FA-A6HN-01 2 108475853 108475853 G C RGPD4 Missense_Mutation p.V493L 0.13 deleterious(0) benign(0.001) TCGA-FA-A6HN-01 2 113146832 113146832 G A RGPD8 Silent p.A1230A 0.17 TCGA-FA-A6HN-01 2 136872627 136872627 C T CXCR4 Missense_Mutation p.A295T 0.18 deleterious(0) probably_damaging(0.999) TCGA-FA-A6HN-01 2 136873655 136873655 C G CXCR4 5'UTR 0.25 TCGA-FA-A6HN-01 2 141819821 141819821 G A LRP1B Silent p.Y345Y 0.21 TCGA-FA-A6HN-01 2 152486080 152486080 G T NEB Silent p.A3268A 0.19 TCGA-FA-A6HN-01 2 182322531 182322531 G A ITGA4 Silent p.T50T 0.15 TCGA-FA-A6HN-01 2 201721689 201721689 C T CLK1 Silent p.L326L 0.27 TCGA-FA-A6HN-01 2 220033469 220033469 C T SLC23A3 Silent p.G201G 0.19 TCGA-FA-A6HN-01 2 227663446 227663446 G A IRS1 Silent p.S3S 0.20 TCGA-FA-A6HN-01 2 232574843 232574843 G A PTMA Intron 0.18 TCGA-FA-A6HN-01 2 26951314 26951314 G A KCNK3 Missense_Mutation p.D355N 0.22 tolerated_low_confidence(0.29) benign(0.085) TCGA-FA-A6HN-01 2 27530571 27530571 G A UCN Missense_Mutation p.R65C 0.29 deleterious(0) benign(0.333) TCGA-FA-A6HN-01 2 89157182 89157182 G A IGKC Missense_Mutation p.P6S 0.23 deleterious(0) probably_damaging(0.997) TCGA-FA-A6HN-01 2 89160430 89160430 G A IGKJ4 Missense_Mutation p.T2I 0.11 probably_damaging(0.99) TCGA-FA-A6HN-01 2 89161057 89161057 C T IGKJ2 Missense_Mutation p.G7E 0.03 unknown(0) TCGA-FA-A6HN-01 2 89161446 89161446 G A IGKC 5'Flank 0.18 TCGA-FA-A6HN-01 2 89161517 89161517 G A IGKC 5'Flank 0.21 TCGA-FA-A6HN-01 2 96810559 96810559 G C DUSP2 Missense_Mutation p.L151V 0.16 tolerated(0.35) benign(0.031) TCGA-FA-A6HN-01 3 109195589 109195589 A G RP11-702L6.4 RNA 0.25 TCGA-FA-A6HN-01 3 134670283 134670283 A G EPHB1 Missense_Mutation p.E65G 0.35 tolerated(0.08) benign(0.005) TCGA-FA-A6HN-01 3 160130162 160130162 G A SMC4 Missense_Mutation p.E301K 0.37 tolerated(0.15) benign(0.038) TCGA-FA-A6HN-01 3 183855505 183855505 G T EIF2B5 Missense_Mutation p.A140S 0.27 tolerated(0.26) benign(0.021) TCGA-FA-A6HN-01 3 186502355 186502355 C G EIF4A2 Missense_Mutation p.S26R 0.18 deleterious(0.03) benign(0.01) TCGA-FA-A6HN-01 3 186502430 186502430 C T EIF4A2 Silent p.Y51Y 0.20 TCGA-FA-A6HN-01 3 197678057 197678057 C T RPL35A Silent p.G13G 0.18 TCGA-FA-A6HN-01 3 32022446 32022446 C T OSBPL10 Missense_Mutation p.A76T 0.12 tolerated_low_confidence(0.47) possibly_damaging(0.478) TCGA-FA-A6HN-01 3 37151161 37151161 T C LRRFIP2 Missense_Mutation p.T183A 0.19 tolerated(0.08) benign(0.021) TCGA-FA-A6HN-01 3 45636656 45636656 C T LIMD1 Silent p.S95S 0.19 TCGA-FA-A6HN-01 3 50378219 50378219 C T RASSF1 Silent p.E6E 0.25 TCGA-FA-A6HN-01 3 50609175 50609175 C T HEMK1 Missense_Mutation p.P88L 0.28 tolerated(0.3) benign(0.001) TCGA-FA-A6HN-01 3 63466620 63466620 C T SYNPR Missense_Mutation p.A66V 0.18 tolerated(0.2) benign(0.149) TCGA-FA-A6HN-01 4 114290944 114290944 G A ANK2 Missense_Mutation p.D3865N 0.18 possibly_damaging(0.575) TCGA-FA-A6HN-01 4 144467950 144467950 A C SMARCA5 Silent p.R848R 0.27 TCGA-FA-A6HN-01 4 147628249 147628249 A T TTC29 3'UTR 0.23 TCGA-FA-A6HN-01 4 148594981 148594981 A C PRMT10 Missense_Mutation p.V128G 0.18 deleterious(0) probably_damaging(0.974) TCGA-FA-A6HN-01 4 162307643 162307643 G T FSTL5 Intron 0.29 TCGA-FA-A6HN-01 4 2062888 2062888 C T NAT8L Silent p.P180P 0.20 TCGA-FA-A6HN-01 4 42400047 42400047 C T SHISA3 5'UTR 0.31 TCGA-FA-A6HN-01 4 83294756 83294756 G A HNRNPD Nonsense_Mutation p.Q26* 0.32 TCGA-FA-A6HN-01 5 121488255 121488255 G T ZNF474 Missense_Mutation p.K190N 0.24 deleterious(0.02) benign(0.023) TCGA-FA-A6HN-01 5 140229745 140229745 G A PCDHA9 Silent p.V555V 0.14 TCGA-FA-A6HN-01 5 140810511 140810511 G A PCDHGA12 Missense_Mutation p.R62H 0.12 tolerated_low_confidence(0.16) benign(0.243) TCGA-FA-A6HN-01 5 141248200 141248200 C - PCDH1 Frame_Shift_Del p.K279Nfs*17 0.15 TCGA-FA-A6HN-01 5 141694497 141694497 G A SPRY4 Silent p.A82A 0.24 TCGA-FA-A6HN-01 5 147286021 147286021 A C C5orf46 Missense_Mutation p.L15R 0.14 deleterious(0) unknown(0) TCGA-FA-A6HN-01 5 147286047 147286047 A G C5orf46 Silent p.L6L 0.13 TCGA-FA-A6HN-01 5 176830399 176830399 C T F12 Splice_Site p.X463_splice 0.13 TCGA-FA-A6HN-01 5 58334737 58334737 C T PDE4D Silent p.Q290Q 0.17 TCGA-FA-A6HN-01 6 151907033 151907033 C T CCDC170 Nonsense_Mutation p.Q368* 0.24 TCGA-FA-A6HN-01 6 152671306 152671306 G C SYNE1 Missense_Mutation p.H3966Q 0.20 benign(0.091) TCGA-FA-A6HN-01 6 159187931 159187931 G A EZR 3'UTR 0.16 TCGA-FA-A6HN-01 6 159463199 159463199 C T TAGAP Missense_Mutation p.A76T 0.13 tolerated(0.68) benign(0.022) TCGA-FA-A6HN-01 6 161173935 161173935 G A PLG Missense_Mutation p.D759N 0.21 deleterious(0.02) probably_damaging(0.956) TCGA-FA-A6HN-01 6 161519331 161519331 C T MAP3K4 Silent p.D1182D 0.11 TCGA-FA-A6HN-01 6 168927023 168927023 C T SMOC2 Intron 0.18 TCGA-FA-A6HN-01 6 26056391 26056391 C T HIST1H1C Missense_Mutation p.S89N 0.16 tolerated(0.27) benign(0.147) TCGA-FA-A6HN-01 6 26056517 26056518 GC CAGA HIST1H1C Frame_Shift_Ins p.A47Sfs*17 0.19 TCGA-FA-A6HN-01 6 26123770 26123770 C T HIST1H2BC Silent p.K121K 0.19 TCGA-FA-A6HN-01 6 26124565 26124565 C A HIST1H2AC Silent p.L35L 0.16 TCGA-FA-A6HN-01 6 26124919 26124919 C T HIST1H2AC Intron 0.23 TCGA-FA-A6HN-01 6 26216544 26216544 G A HIST1H2BG Missense_Mutation p.H110Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-FA-A6HN-01 6 26234570 26234570 G A HIST1H1D Missense_Mutation p.P198S 0.31 tolerated(0.08) unknown(0) TCGA-FA-A6HN-01 6 26234687 26234687 C A HIST1H1D Missense_Mutation p.V159L 0.14 deleterious(0.01) unknown(0) TCGA-FA-A6HN-01 6 26234812 26234812 C T HIST1H1D Missense_Mutation p.G117D 0.26 deleterious(0.04) unknown(0) TCGA-FA-A6HN-01 6 26240823 26240823 G A HIST1H4F Missense_Mutation p.G57D 0.14 tolerated(0.05) benign(0.058) TCGA-FA-A6HN-01 6 26250470 26250480 GCATGATAGTC - HIST1H3F Frame_Shift_Del p.T119Qfs*? 0.27 TCGA-FA-A6HN-01 6 26250506 26250506 G A HIST1H3F Silent p.L110L 0.24 TCGA-FA-A6HN-01 6 26285420 26285420 C T HIST1H4H Missense_Mutation p.G103D 0.41 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-FA-A6HN-01 6 27100963 27100963 G A HIST1H2AG Missense_Mutation p.G38D 0.18 deleterious_low_confidence(0.02) probably_damaging(0.944) TCGA-FA-A6HN-01 6 27101244 27101244 C A HIST1H2AG 3'UTR 0.14 TCGA-FA-A6HN-01 6 27107282 27107282 C T HIST1H4I Silent p.N65N 0.36 TCGA-FA-A6HN-01 6 27775375 27775375 G A HIST1H2BL Missense_Mutation p.P104S 0.27 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-FA-A6HN-01 6 27798983 27798983 G A HIST1H4K 3'UTR 0.14 TCGA-FA-A6HN-01 6 27805883 27805883 T C HIST1H2AK Missense_Mutation p.I79V 0.16 tolerated_low_confidence(0.06) benign(0.145) TCGA-FA-A6HN-01 6 27806574 27806574 G A HIST1H2BN Silent p.V45V 0.19 TCGA-FA-A6HN-01 6 27839875 27839875 C T HIST1H3I Silent p.R73R 0.38 TCGA-FA-A6HN-01 6 27860749 27860749 G A HIST1H2AM Missense_Mutation p.T60I 0.19 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-FA-A6HN-01 6 30711747 30711747 C T IER3 Missense_Mutation p.S146N 0.07 tolerated(0.09) possibly_damaging(0.474) TCGA-FA-A6HN-01 6 31605491 31605491 C T PRRC2A 3'UTR 0.38 TCGA-FA-A6HN-01 6 31918104 31918104 G A CFB Silent p.V1018V 0.08 TCGA-FA-A6HN-01 6 32940598 32940598 C G BRD2 5'UTR 0.19 TCGA-FA-A6HN-01 6 35437008 35437008 C T RPL10A Intron 0.20 TCGA-FA-A6HN-01 6 38545397 38545397 T C BTBD9 Missense_Mutation p.Y378C 0.40 deleterious(0.03) unknown(0) TCGA-FA-A6HN-01 6 393209 393209 C T IRF4 Silent p.C19C 0.42 TCGA-FA-A6HN-01 6 393222 393222 C G IRF4 Missense_Mutation p.L24V 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-FA-A6HN-01 6 393348 393348 G A IRF4 Missense_Mutation p.E66K 0.42 deleterious(0.01) probably_damaging(0.982) TCGA-FA-A6HN-01 6 43399895 43399895 C T ABCC10 Silent p.I59I 0.12 TCGA-FA-A6HN-01 6 50712940 50712940 A G TFAP2D Missense_Mutation p.K335R 0.21 tolerated(0.15) benign(0.17) TCGA-FA-A6HN-01 6 52344443 52344443 G T EFHC1 Missense_Mutation p.G500C 0.18 deleterious(0) possibly_damaging(0.897) TCGA-FA-A6HN-01 6 78172576 78172576 A G HTR1B Missense_Mutation p.L182P 0.15 deleterious(0) possibly_damaging(0.905) TCGA-FA-A6HN-01 6 79671508 79671508 C T PHIP Silent p.V1185V 0.05 TCGA-FA-A6HN-01 6 84569547 84569547 C G CYB5R4 Missense_Mutation p.Q16E 0.17 deleterious(0.03) possibly_damaging(0.777) TCGA-FA-A6HN-01 7 137080402 137080402 C A DGKI Missense_Mutation p.R1008L 0.14 deleterious(0.03) possibly_damaging(0.88) TCGA-FA-A6HN-01 7 138252286 138252286 C T TRIM24 Missense_Mutation p.L531F 0.15 tolerated(0.71) benign(0.361) TCGA-FA-A6HN-01 7 27702327 27702327 G A HIBADH Silent p.S27S 0.21 TCGA-FA-A6HN-01 7 39990603 39990603 C T CDK13 Silent p.F121F 0.21 TCGA-FA-A6HN-01 7 5568064 5568064 C T ACTB Missense_Mutation p.C217Y 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FA-A6HN-01 7 74524781 74524781 C T GTF2IRD2B Silent p.L9L 0.16 TCGA-FA-A6HN-01 7 84629120 84629120 T C SEMA3D Missense_Mutation p.K657R 0.17 tolerated(1) benign(0.004) TCGA-FA-A6HN-01 7 88956767 88956767 A C ZNF804B Missense_Mutation p.E120A 0.13 deleterious(0) probably_damaging(0.998) TCGA-FA-A6HN-01 7 99517070 99517070 G T TRIM4 5'UTR 0.19 TCGA-FA-A6HN-01 8 105263908 105263908 G C RIMS2 Missense_Mutation p.E1304Q 0.17 deleterious_low_confidence(0) possibly_damaging(0.5) TCGA-FA-A6HN-01 8 126443492 126443492 G A TRIB1 Silent p.E116E 0.21 TCGA-FA-A6HN-01 8 128751032 128751032 G A MYC Missense_Mutation p.S190N 0.17 tolerated(0.18) benign(0.257) TCGA-FA-A6HN-01 8 146016875 146016875 G A RPL8 Missense_Mutation p.L96F 0.22 deleterious(0.01) probably_damaging(0.958) TCGA-FA-A6HN-01 8 36694417 36694417 G A KCNU1 Missense_Mutation p.G491D 0.18 deleterious(0) probably_damaging(1) TCGA-FA-A6HN-01 8 38899582 38899582 C A ADAM9 Silent p.S416S 0.22 TCGA-FA-A6HN-01 8 48889332 48889332 G A MCM4 Silent p.L862L 0.20 TCGA-FA-A6HN-01 8 72754827 72754844 CCCTTCTCTCCGTGGCCC - MSC 3'UTR 0.17 TCGA-FA-A6HN-01 8 79510766 79510766 G A PKIA Silent p.K49K 0.17 TCGA-FA-A6HN-01 8 79629693 79629693 T C ZC2HC1A Missense_Mutation p.C315R 0.22 deleterious(0) probably_damaging(0.999) TCGA-FA-A6HN-01 9 101518730 101518730 G T ANKS6 Silent p.G766G 0.13 TCGA-FA-A6HN-01 9 107361514 107361514 A C OR13C5 Missense_Mutation p.F61V 0.12 deleterious(0.01) benign(0.437) TCGA-FA-A6HN-01 9 130742423 130742423 G C FAM102A 5'UTR 0.17 TCGA-FA-A6HN-01 9 131396238 131396238 G A WDR34 Nonsense_Mutation p.Q466* 0.20 TCGA-FA-A6HN-01 9 139926526 139926526 G A C9orf139 5'UTR 0.31 TCGA-FA-A6HN-01 9 34371277 34371277 G A KIAA1161 Silent p.G521G 0.05 TCGA-FA-A6HN-01 9 35077020 35077020 C T FANCG Missense_Mutation p.R242Q 0.24 tolerated(0.12) benign(0.048) TCGA-FA-A6HN-01 9 37002696 37002696 G C PAX5 Missense_Mutation p.L185V 0.21 deleterious(0.04) probably_damaging(0.946) TCGA-FA-A6HN-01 9 77400960 77400960 C G TRPM6 Missense_Mutation p.A917P 0.21 deleterious(0) probably_damaging(0.989) TCGA-FA-A6HN-01 9 91616093 91616093 T G S1PR3 5'UTR 0.19 TCGA-FA-A6HN-01 9 95887259 95887259 C A NINJ1 Silent p.V130V 0.18 TCGA-FA-A6HN-01 9 99180102 99180102 C T ZNF367 Nonsense_Mutation p.W71* 0.12 TCGA-FA-A6HN-01 X 118893023 118893023 G C SOWAHD Missense_Mutation p.E131D 0.25 deleterious(0.01) benign(0.378) TCGA-FA-A6HN-01 X 12994364 12994364 G A TMSB4X 5'UTR 0.22 TCGA-FA-A6HN-01 X 12994468 12994468 C A TMSB4X Missense_Mutation p.P30T 0.38 deleterious(0) possibly_damaging(0.908) TCGA-FA-A6HN-01 X 12994912 12994912 G A TMSB4X Silent p.K39K 0.35 TCGA-FA-A6HN-01 X 135574270 135574270 C T BRS3 Silent p.T312T 0.48 TCGA-FA-A6HN-01 X 146307457 146307457 T A MIR513A2 RNA 0.30 TCGA-FA-A6HN-01 X 153236330 153236330 C T HCFC1 5'UTR 0.26 TCGA-FA-A6HN-01 X 153670076 153670076 A G GDI1 Missense_Mutation p.K309R 0.22 tolerated(0.07) benign(0.004) TCGA-FA-A6HN-01 X 1718203 1718203 C G AKAP17A Missense_Mutation p.L344V 0.17 tolerated(0.2) unknown(0) TCGA-FA-A6HN-01 X 41555136 41555136 C T GPR34 Missense_Mutation p.R84C 0.43 deleterious(0.05) benign(0.087) TCGA-FA-A6HN-01 X 46618168 46618168 C T SLC9A7 Silent p.L99L 0.40 TCGA-FA-A6HN-01 X 50659592 50659592 T C BMP15 Silent p.S388S 0.51 TCGA-FA-A6HO-01 10 21309077 21309077 C T NEBL Missense_Mutation p.R39H 0.07 tolerated(0.13) probably_damaging(0.996) TCGA-FA-A6HO-01 10 76854424 76854424 G A DUSP13 3'Flank 0.09 TCGA-FA-A6HO-01 10 77158962 77158962 C T ZNF503 Missense_Mutation p.A496T 0.47 tolerated(0.33) benign(0.024) TCGA-FA-A6HO-01 11 101375357 101375357 G A TRPC6 Missense_Mutation p.R115W 0.10 deleterious(0) probably_damaging(0.999) TCGA-FA-A6HO-01 11 118868860 118868860 A G CCDC84 5'UTR 0.12 TCGA-FA-A6HO-01 11 86131001 86131001 C T CCDC81 Nonsense_Mutation p.R575* 0.21 TCGA-FA-A6HO-01 12 121014414 121014414 G C RNF10 Missense_Mutation p.R794T 0.17 deleterious(0.01) possibly_damaging(0.529) TCGA-FA-A6HO-01 12 133389993 133389993 G T GOLGA3 Missense_Mutation p.S140Y 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.807) TCGA-FA-A6HO-01 12 7848214 7848214 C T GDF3 Silent p.K37K 0.16 TCGA-FA-A6HO-01 12 79747399 79747399 G A SYT1 Missense_Mutation p.D310N 0.18 deleterious(0) possibly_damaging(0.782) TCGA-FA-A6HO-01 12 92537952 92537952 C T BTG1 Silent p.V140V 0.06 TCGA-FA-A6HO-01 12 92539200 92539200 G A BTG1 Nonsense_Mutation p.Q38* 0.15 TCGA-FA-A6HO-01 13 114783725 114783725 C T RASA3 Missense_Mutation p.V316M 0.22 deleterious(0) possibly_damaging(0.847) TCGA-FA-A6HO-01 13 26145829 26145829 C T ATP8A2 Missense_Mutation p.A554V 0.09 tolerated(0.64) benign(0.126) TCGA-FA-A6HO-01 13 42877901 42877901 C T AKAP11 Silent p.A1673A 0.24 TCGA-FA-A6HO-01 13 43474489 43474489 G T EPSTI1 Missense_Mutation p.Q269K 0.05 tolerated(0.16) benign(0.407) TCGA-FA-A6HO-01 13 50206353 50206356 TTTA - ARL11 3'UTR 0.15 TCGA-FA-A6HO-01 13 58206670 58206670 A G PCDH17 5'UTR 0.26 TCGA-FA-A6HO-01 13 95092324 95092324 A G DCT Missense_Mutation p.V496A 0.14 tolerated(0.93) benign(0.003) TCGA-FA-A6HO-01 14 106110034 106110034 C G IGHG2 Missense_Mutation p.G195A 0.07 deleterious(0.02) benign(0.44) TCGA-FA-A6HO-01 14 106110081 106110081 G A IGHG2 Silent p.F179F 0.09 TCGA-FA-A6HO-01 14 106110836 106110836 C T IGHG2 Missense_Mutation p.V98I 0.18 tolerated(0.99) benign(0.007) TCGA-FA-A6HO-01 14 106111047 106111047 G A IGHG2 Silent p.C27C 0.11 TCGA-FA-A6HO-01 14 106237575 106237575 G A IGHG3 Silent p.L57L 0.15 TCGA-FA-A6HO-01 14 106329413 106329413 G A IGHJ6 Missense_Mutation p.S19F 0.08 benign(0.001) TCGA-FA-A6HO-01 14 106452768 106452768 C T IGHV1-2 Missense_Mutation p.G85D 0.24 tolerated(0.1) benign(0.067) TCGA-FA-A6HO-01 14 106452776 106452776 C T IGHV1-2 Silent p.K82K 0.27 TCGA-FA-A6HO-01 14 106452795 106452795 C T IGHV1-2 Missense_Mutation p.G76D 0.33 tolerated(0.8) benign(0.003) TCGA-FA-A6HO-01 14 106452873 106452873 C T IGHV1-2 Missense_Mutation p.G50D 0.46 tolerated(0.43) benign(0.001) TCGA-FA-A6HO-01 14 107083646 107083646 G C IGHV4-59 Missense_Mutation p.P14A 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.703) TCGA-FA-A6HO-01 14 69951714 69951714 C G PLEKHD1 Missense_Mutation p.P11R 0.17 deleterious(0) probably_damaging(0.997) TCGA-FA-A6HO-01 14 69951715 69951715 C T PLEKHD1 Silent p.P11P 0.17 TCGA-FA-A6HO-01 15 56208006 56208006 G A NEDD4 Missense_Mutation p.R342W 0.20 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-FA-A6HO-01 17 42881984 42881984 G C GJC1 3'UTR 0.23 TCGA-FA-A6HO-01 17 56408622 56408622 C T BZRAP1 5'Flank 0.41 TCGA-FA-A6HO-01 17 62006798 62006798 T A CD79B Missense_Mutation p.Y197F 0.40 deleterious(0) probably_damaging(0.999) TCGA-FA-A6HO-01 17 79912130 79912130 A G NOTUM Splice_Site p.X395_splice 0.05 TCGA-FA-A6HO-01 19 1220490 1220490 C T STK11 Silent p.L195L 0.15 TCGA-FA-A6HO-01 19 1434903 1434903 C T DAZAP1 Nonsense_Mutation p.R406* 0.40 TCGA-FA-A6HO-01 19 17294657 17294657 C T MYO9B Nonsense_Mutation p.Q785* 0.15 TCGA-FA-A6HO-01 19 43268286 43268286 T C PSG8 Missense_Mutation p.Q71R 0.12 deleterious(0.04) benign(0.013) TCGA-FA-A6HO-01 19 54573366 54573366 C A TARM1 Missense_Mutation p.R236L 0.16 deleterious(0) possibly_damaging(0.731) TCGA-FA-A6HO-01 1 113460019 113460019 C T SLC16A1 Missense_Mutation p.V337I 0.27 tolerated(0.74) benign(0.009) TCGA-FA-A6HO-01 1 156215643 156215643 G A PAQR6 5'UTR 0.12 TCGA-FA-A6HO-01 1 200586864 200586864 C A KIF14 Missense_Mutation p.A330S 0.31 tolerated(0.85) benign(0.012) TCGA-FA-A6HO-01 1 203276562 203276562 G A BTG2 Missense_Mutation p.S158N 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-FA-A6HO-01 1 26655287 26655287 C T AIM1L Silent p.V590V 0.24 TCGA-FA-A6HO-01 1 33329797 33329797 A G FNDC5 3'UTR 0.16 TCGA-FA-A6HO-01 1 37948367 37948367 C T ZC3H12A Nonsense_Mutation p.R319* 0.17 TCGA-FA-A6HO-01 20 13830077 13830077 G A SEL1L2 3'UTR 0.09 TCGA-FA-A6HO-01 20 23030270 23030270 T C THBD 5'UTR 0.12 TCGA-FA-A6HO-01 22 23230188 23230188 C T IGLL5 5'UTR 0.26 TCGA-FA-A6HO-01 22 23230374 23230374 C T IGLL5 Silent p.S47S 0.08 TCGA-FA-A6HO-01 2 214239770 214239770 G T SPAG16 Missense_Mutation p.G290V 0.04 deleterious(0.03) benign(0.023) TCGA-FA-A6HO-01 2 36970356 36970356 G A VIT Missense_Mutation p.V78M 0.06 deleterious(0.02) benign(0.146) TCGA-FA-A6HO-01 2 74784099 74784099 C T DOK1 Missense_Mutation p.T435I 0.06 tolerated(0.17) benign(0.001) TCGA-FA-A6HO-01 2 89185359 89185359 C T IGKV4-1 Missense_Mutation p.A18V 0.32 tolerated(0.17) benign(0.011) TCGA-FA-A6HO-01 2 89185432 89185432 C G IGKV4-1 Missense_Mutation p.N42K 0.29 tolerated(0.13) possibly_damaging(0.733) TCGA-FA-A6HO-01 2 96810559 96810559 G A DUSP2 Silent p.L151L 0.11 TCGA-FA-A6HO-01 2 96810561 96810561 G A DUSP2 Missense_Mutation p.A150V 0.12 tolerated(0.4) benign(0.001) TCGA-FA-A6HO-01 3 111732292 111732292 A G TAGLN3 Missense_Mutation p.E165G 0.04 tolerated(0.12) benign(0.013) TCGA-FA-A6HO-01 3 133099739 133099739 G A TMEM108 Missense_Mutation p.S395N 0.19 deleterious_low_confidence(0.04) benign(0.009) TCGA-FA-A6HO-01 3 134343950 134343950 T G KY Missense_Mutation p.K143T 0.17 deleterious(0) probably_damaging(0.976) TCGA-FA-A6HO-01 3 179525541 179525541 G A PEX5L Nonsense_Mutation p.R533* 0.06 TCGA-FA-A6HO-01 3 49017001 49017001 G A ARIH2 Missense_Mutation p.V350M 0.17 tolerated(0.09) possibly_damaging(0.869) TCGA-FA-A6HO-01 3 49362425 49362425 G C USP4 Missense_Mutation p.R179G 0.10 deleterious(0.01) benign(0.145) TCGA-FA-A6HO-01 3 77089860 77089860 T A ROBO2 Intron 0.14 TCGA-FA-A6HO-01 3 77147265 77147265 G A ROBO2 Silent p.A70A 0.06 TCGA-FA-A6HO-01 4 3184180 3184180 A G HTT Missense_Mutation p.M1617V 0.30 benign(0.097) TCGA-FA-A6HO-01 5 148742308 148742308 G T PCYOX1L Missense_Mutation p.R66L 0.30 deleterious(0) benign(0.221) TCGA-FA-A6HO-01 5 33937403 33937403 G A RXFP3 Silent p.S186S 0.11 TCGA-FA-A6HO-01 6 31543608 31543608 C T TNF Silent p.C30C 0.34 TCGA-FA-A6HO-01 6 34500455 34500455 G T PACSIN1 3'UTR 0.12 TCGA-FA-A6HO-01 6 37447930 37447930 G A CMTR1 3'UTR 0.09 TCGA-FA-A6HO-01 7 94041934 94041934 C T COL1A2 Silent p.G481G 0.19 TCGA-FA-A6HO-01 8 113657379 113657379 G A CSMD3 Missense_Mutation p.S1090F 0.21 tolerated(0.09) possibly_damaging(0.574) TCGA-FA-A6HO-01 8 2944669 2944669 C T CSMD1 Missense_Mutation p.R2475Q 0.16 benign(0.013) TCGA-FA-A6HO-01 8 30706107 30706107 C A TEX15 Missense_Mutation p.V143F 0.06 deleterious(0) benign(0.406) TCGA-FA-A6HO-01 8 62430094 62430094 C T ASPH Missense_Mutation p.E707K 0.16 deleterious(0.05) benign(0.105) TCGA-FA-A6HO-01 9 74838127 74838127 G A GDA Missense_Mutation p.R233H 0.05 tolerated(1) benign(0) TCGA-FA-A6HO-01 9 97321395 97321395 C T FBP2 Missense_Mutation p.C282Y 0.09 deleterious(0) probably_damaging(0.951) TCGA-FA-A6HO-01 X 105970554 105970554 G C RNF128 Missense_Mutation p.E137D 0.28 tolerated(0.12) benign(0.001) TCGA-FA-A6HO-01 X 153039489 153039489 C T PLXNB3 Missense_Mutation p.P1175L 0.17 deleterious(0.03) possibly_damaging(0.885) TCGA-FA-A6HO-01 X 30327153 30327153 C T NR0B1 Missense_Mutation p.G110S 0.07 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-FA-A6HO-01 X 37965974 37965974 G T SYTL5 Missense_Mutation p.K450N 0.16 deleterious(0) probably_damaging(0.991) TCGA-FA-A6HO-01 X 39921444 39921444 T C BCOR Missense_Mutation p.N1459S 0.33 deleterious(0) possibly_damaging(0.644) TCGA-FA-A6HO-01 X 48270302 48270302 G A SSX4B Silent p.F25F 0.05 TCGA-FA-A7DS-01 10 105331517 105331517 C T NEURL1 Missense_Mutation p.T196M 0.37 deleterious(0.01) possibly_damaging(0.84) TCGA-FA-A7DS-01 10 123843062 123843062 C T TACC2 Silent p.G349G 0.27 TCGA-FA-A7DS-01 10 123987498 123987498 G A TACC2 Missense_Mutation p.G2624D 0.36 probably_damaging(0.982) TCGA-FA-A7DS-01 10 51769455 51769455 T C AGAP6 Missense_Mutation p.W524R 0.25 deleterious(0) probably_damaging(0.999) TCGA-FA-A7DS-01 10 7679231 7679231 C T ITIH5 Silent p.P204P 0.50 TCGA-FA-A7DS-01 10 91403521 91403521 C T PANK1 Intron 0.35 TCGA-FA-A7DS-01 11 113264381 113264381 C T ANKK1 Missense_Mutation p.R122C 0.33 tolerated(0.14) benign(0.029) TCGA-FA-A7DS-01 11 120008144 120008144 A G TRIM29 Missense_Mutation p.L199P 0.57 deleterious(0) probably_damaging(0.999) TCGA-FA-A7DS-01 11 1260239 1260239 C A MUC5B Silent p.R1146R 0.34 TCGA-FA-A7DS-01 11 1277988 1277988 C T MUC5B Silent p.C5408C 0.18 TCGA-FA-A7DS-01 11 69625283 69625283 G A FGF3 Silent p.R170R 0.08 TCGA-FA-A7DS-01 11 75277917 75277917 G A SERPINH1 Missense_Mutation p.E175K 0.36 tolerated(0.12) possibly_damaging(0.818) TCGA-FA-A7DS-01 11 77091008 77091008 C A PAK1 Missense_Mutation p.E74D 0.33 tolerated(0.16) possibly_damaging(0.69) TCGA-FA-A7DS-01 11 78516504 78516504 C A TENM4 Missense_Mutation p.G671V 0.48 deleterious(0) probably_damaging(0.984) TCGA-FA-A7DS-01 11 92085263 92085263 A G FAT3 5'UTR 0.27 TCGA-FA-A7DS-01 11 93462694 93462694 C T KIAA1731 Missense_Mutation p.T2466I 0.28 tolerated(0.14) benign(0.004) TCGA-FA-A7DS-01 12 11803094 11803094 G C ETV6 Missense_Mutation p.K11N 0.62 tolerated(0.07) benign(0.015) TCGA-FA-A7DS-01 12 11803095 11803095 G A ETV6 Splice_Site p.X11_splice 0.62 TCGA-FA-A7DS-01 12 20522715 20522715 C T PDE3A Missense_Mutation p.A166V 0.33 tolerated(0.97) benign(0.002) TCGA-FA-A7DS-01 12 20787928 20787928 A T PDE3A Nonsense_Mutation p.R647* 0.34 TCGA-FA-A7DS-01 12 40704416 40704416 C T LRRK2 Missense_Mutation p.R1501W 0.05 deleterious(0) probably_damaging(1) TCGA-FA-A7DS-01 12 49426385 49426388 AAGA - KMT2D Frame_Shift_Del p.S4034Qfs*15 0.63 TCGA-FA-A7DS-01 12 52886934 52886934 G T KRT6A Missense_Mutation p.S13R 0.23 deleterious(0.04) unknown(0) TCGA-FA-A7DS-01 12 53185490 53185490 C T KRT3 Silent p.E433E 0.55 TCGA-FA-A7DS-01 12 6076733 6076733 G T VWF Silent p.T2602T 0.59 TCGA-FA-A7DS-01 12 6672843 6672843 C T NOP2 Missense_Mutation p.G242S 0.40 tolerated(0.17) benign(0.009) TCGA-FA-A7DS-01 13 108518491 108518491 G A FAM155A Missense_Mutation p.R152W 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-FA-A7DS-01 13 110831729 110831729 G A COL4A1 Missense_Mutation p.P745S 0.08 benign(0.012) TCGA-FA-A7DS-01 13 51855115 51855115 C A FAM124A Missense_Mutation p.A491E 0.38 tolerated(0.59) benign(0.167) TCGA-FA-A7DS-01 14 103593900 103593900 C T TNFAIP2 Missense_Mutation p.A265V 0.35 tolerated(0.07) possibly_damaging(0.624) TCGA-FA-A7DS-01 14 106091014 106091014 C A IGHG4 Missense_Mutation p.W261C 0.30 deleterious(0) probably_damaging(1) TCGA-FA-A7DS-01 14 106091357 106091357 C T IGHG4 Silent p.T179T 0.40 TCGA-FA-A7DS-01 14 106091423 106091423 C A IGHG4 Missense_Mutation p.W157C 0.43 deleterious(0) probably_damaging(1) TCGA-FA-A7DS-01 14 106091563 106091563 C A IGHG4 Splice_Site p.X111_splice 0.35 TCGA-FA-A7DS-01 14 106092158 106092158 G A IGHG4 Silent p.T82T 0.31 TCGA-FA-A7DS-01 14 106092159 106092159 G C IGHG4 Missense_Mutation p.T82S 0.30 tolerated(0.1) possibly_damaging(0.576) TCGA-FA-A7DS-01 14 106092235 106092235 G A IGHG4 Silent p.L57L 0.26 TCGA-FA-A7DS-01 14 106092289 106092289 C T IGHG4 Missense_Mutation p.V39M 0.26 deleterious(0.01) possibly_damaging(0.903) TCGA-FA-A7DS-01 14 106110088 106110088 C G IGHG2 Missense_Mutation p.S177T 0.61 tolerated(0.16) possibly_damaging(0.898) TCGA-FA-A7DS-01 14 106110833 106110837 CAACT - IGHG2 Frame_Shift_Del p.V98Afs*38 0.44 TCGA-FA-A7DS-01 14 106110883 106110883 G A IGHG2 Missense_Mutation p.T82I 0.50 tolerated(0.39) benign(0.002) TCGA-FA-A7DS-01 14 106110947 106110947 C T IGHG2 Missense_Mutation p.G61R 0.74 deleterious(0.04) probably_damaging(1) TCGA-FA-A7DS-01 14 106111051 106111051 C T IGHG2 Missense_Mutation p.G26D 0.63 deleterious(0.01) probably_damaging(1) TCGA-FA-A7DS-01 14 106208006 106208006 C T IGHG1 Missense_Mutation p.S266N 0.63 tolerated(0.48) benign(0.034) TCGA-FA-A7DS-01 14 106208271 106208271 G A IGHG1 Missense_Mutation p.A210V 0.15 tolerated(0.25) possibly_damaging(0.706) TCGA-FA-A7DS-01 14 106208363 106208363 G C IGHG1 Nonsense_Mutation p.Y179* 0.64 TCGA-FA-A7DS-01 14 106209250 106209250 G T IGHG1 Missense_Mutation p.F53L 0.54 deleterious(0.01) probably_damaging(1) TCGA-FA-A7DS-01 14 106209351 106209351 C A IGHG1 Missense_Mutation p.G20W 0.74 deleterious(0.01) possibly_damaging(0.644) TCGA-FA-A7DS-01 14 106237025 106237025 G A IGHG3 Silent p.H109H 0.26 TCGA-FA-A7DS-01 14 106321141 106321141 C T IGHM Missense_Mutation p.S283N 0.55 deleterious(0.02) probably_damaging(0.936) TCGA-FA-A7DS-01 14 106321840 106321840 G C IGHM Missense_Mutation p.L132V 0.50 tolerated(0.12) possibly_damaging(0.591) TCGA-FA-A7DS-01 14 106322036 106322036 G A IGHM Silent p.N96N 0.10 TCGA-FA-A7DS-01 14 106829767 106829767 G A IGHV4-34 Missense_Mutation p.P66S 0.08 tolerated(0.15) benign(0.009) TCGA-FA-A7DS-01 14 106829781 106829781 C G IGHV4-34 Missense_Mutation p.S61T 0.08 tolerated(0.24) benign(0.039) TCGA-FA-A7DS-01 14 106829876 106829876 C G IGHV4-34 Missense_Mutation p.Q29H 0.33 deleterious(0.02) benign(0.165) TCGA-FA-A7DS-01 14 107170131 107170131 A G IGHV1-69 Missense_Mutation p.Y51H 0.35 tolerated(0.07) benign(0.045) TCGA-FA-A7DS-01 14 107170132 107170132 G A IGHV1-69 Silent p.S50S 0.34 TCGA-FA-A7DS-01 14 107178863 107178863 T C IGHV2-70 Missense_Mutation p.N105S 0.32 tolerated(1) benign(0.001) TCGA-FA-A7DS-01 14 20388876 20388876 C A OR4K5 Silent p.V37V 0.32 TCGA-FA-A7DS-01 14 23356264 23356264 G A REM2 3'UTR 0.71 TCGA-FA-A7DS-01 14 65054027 65054027 G A PPP1R36 Missense_Mutation p.R276H 0.28 tolerated(0.13) possibly_damaging(0.802) TCGA-FA-A7DS-01 14 74874557 74874557 G T SYNDIG1L Missense_Mutation p.Q185K 0.32 deleterious(0.03) benign(0.412) TCGA-FA-A7DS-01 15 49338480 49338480 G A SECISBP2L Missense_Mutation p.T6M 0.32 deleterious_low_confidence(0.02) benign(0.042) TCGA-FA-A7DS-01 15 67528329 67528329 G A AAGAB Missense_Mutation p.P147S 0.30 tolerated(0.15) probably_damaging(0.999) TCGA-FA-A7DS-01 15 73617312 73617312 G A HCN4 Silent p.D654D 0.36 TCGA-FA-A7DS-01 16 14738262 14738262 T C BFAR Missense_Mutation p.L20P 0.30 tolerated(0.24) benign(0.001) TCGA-FA-A7DS-01 16 61689483 61689483 G T CDH8 Nonsense_Mutation p.C599* 0.38 TCGA-FA-A7DS-01 16 72137944 72137944 G A DHX38 Missense_Mutation p.D642N 0.32 deleterious(0.04) possibly_damaging(0.846) TCGA-FA-A7DS-01 17 1465913 1465913 C A PITPNA 5'UTR 0.45 TCGA-FA-A7DS-01 17 34894710 34894712 CTC - PIGW 3'Flank 0.30 TCGA-FA-A7DS-01 17 3572623 3572623 G A EMC6 Silent p.L61L 0.34 TCGA-FA-A7DS-01 17 38645133 38645133 G A TNS4 Silent p.F176F 0.44 TCGA-FA-A7DS-01 17 54403699 54403699 C T ANKFN1 Silent p.A60A 0.30 TCGA-FA-A7DS-01 17 76803328 76803328 C T USP36 Missense_Mutation p.D600N 0.37 tolerated(0.18) benign(0.116) TCGA-FA-A7DS-01 17 79425243 79425243 G A RP11-1055B8.7 Silent p.S1698S 0.28 TCGA-FA-A7DS-01 18 31324989 31324989 C A ASXL3 Missense_Mutation p.A1726D 0.24 benign(0.013) TCGA-FA-A7DS-01 18 3450413 3450413 C T TGIF1 5'Flank 0.17 TCGA-FA-A7DS-01 19 10738451 10738451 A C SLC44A2 Missense_Mutation p.Y47S 0.30 deleterious(0.01) benign(0.162) TCGA-FA-A7DS-01 19 30934742 30934742 G T ZNF536 Missense_Mutation p.E91D 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-FA-A7DS-01 19 40880419 40880419 G A PLD3 Missense_Mutation p.R304H 0.06 deleterious(0) probably_damaging(0.992) TCGA-FA-A7DS-01 19 44832834 44832834 T A ZNF112 Silent p.P498P 0.34 TCGA-FA-A7DS-01 19 54445378 54445378 G A CACNG7 Missense_Mutation p.R220H 0.27 deleterious(0) probably_damaging(0.995) TCGA-FA-A7DS-01 19 54754541 54754541 G C LILRB5 3'UTR 0.22 TCGA-FA-A7DS-01 19 55954006 55954006 C T SHISA7 Silent p.A75A 0.35 TCGA-FA-A7DS-01 19 8045975 8045975 T G ELAVL1 Missense_Mutation p.T90P 0.42 deleterious(0.01) benign(0.023) TCGA-FA-A7DS-01 19 8962366 8962366 T G MUC16 Missense_Mutation p.T14445P 0.29 possibly_damaging(0.463) TCGA-FA-A7DS-01 1 157516959 157516959 G A FCRL5 Silent p.L27L 0.39 TCGA-FA-A7DS-01 1 160968533 160968533 G A F11R 3'UTR 0.23 TCGA-FA-A7DS-01 1 173570953 173570953 G A SLC9C2 5'UTR 0.34 TCGA-FA-A7DS-01 1 178490414 178490414 A G TEX35 Intron 0.29 TCGA-FA-A7DS-01 1 248722412 248722412 G A OR2T29 Silent p.Y127Y 0.25 TCGA-FA-A7DS-01 1 26189430 26189430 G A PAQR7 Missense_Mutation p.R301W 0.42 deleterious(0) probably_damaging(0.972) TCGA-FA-A7DS-01 1 29070284 29070284 T C YTHDF2 Missense_Mutation p.F501S 0.40 deleterious(0) possibly_damaging(0.899) TCGA-FA-A7DS-01 1 35369943 35369943 C T DLGAP3 Missense_Mutation p.G348R 0.48 deleterious(0.03) possibly_damaging(0.794) TCGA-FA-A7DS-01 1 898557 898557 G A KLHL17 Missense_Mutation p.V371M 0.47 tolerated(0.29) benign(0.013) TCGA-FA-A7DS-01 21 43826425 43826436 CGTTGGCAGCCA - UBASH3A In_Frame_Del p.L42_T45del 0.32 TCGA-FA-A7DS-01 22 23040701 23040701 G C IGLV2-23 Missense_Mutation p.S50T 0.63 tolerated_low_confidence(0.44) benign(0.003) TCGA-FA-A7DS-01 22 23090197 23090197 T C IGLV3-16 Silent p.L46L 0.47 TCGA-FA-A7DS-01 22 23090251 23090251 C T IGLV3-16 Silent p.L64L 0.52 TCGA-FA-A7DS-01 22 23101522 23101522 A G IGLV2-14 Missense_Mutation p.Q59R 0.56 deleterious_low_confidence(0.01) benign(0.103) TCGA-FA-A7DS-01 22 23101588 23101588 A C IGLV2-14 Missense_Mutation p.N81T 0.54 deleterious_low_confidence(0) benign(0.006) TCGA-FA-A7DS-01 22 23101666 23101666 A T IGLV2-14 Missense_Mutation p.Y107F 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.592) TCGA-FA-A7DS-01 22 23101693 23101693 G A IGLV2-14 Missense_Mutation p.S116N 0.66 tolerated_low_confidence(0.37) benign(0.001) TCGA-FA-A7DS-01 22 23114859 23114859 A T IGLV3-12 Missense_Mutation p.N44I 0.48 deleterious(0) possibly_damaging(0.892) TCGA-FA-A7DS-01 22 23114917 23114917 G C IGLV3-12 Silent p.V63V 0.50 TCGA-FA-A7DS-01 22 23114937 23114937 G A IGLV3-12 Missense_Mutation p.S70N 0.48 tolerated(0.36) benign(0.018) TCGA-FA-A7DS-01 22 23114989 23114989 C A IGLV3-12 Missense_Mutation p.N87K 0.43 tolerated(0.05) possibly_damaging(0.889) TCGA-FA-A7DS-01 22 23243349 23243349 G A IGLC2 Silent p.K65K 0.38 TCGA-FA-A7DS-01 2 120129950 120129951 - T DBI 3'UTR 0.38 TCGA-FA-A7DS-01 2 152432838 152432838 G A NEB Missense_Mutation p.R5579C 0.39 probably_damaging(1) TCGA-FA-A7DS-01 2 173368882 173368882 C T ITGA6 Missense_Mutation p.R1060W 0.42 deleterious(0.04) probably_damaging(0.942) TCGA-FA-A7DS-01 2 212522545 212522545 C G ERBB4 Missense_Mutation p.G627A 0.53 deleterious(0.02) probably_damaging(0.939) TCGA-FA-A7DS-01 2 224760222 224760222 G T WDFY1 Missense_Mutation p.H242N 0.06 tolerated(1) benign(0.034) TCGA-FA-A7DS-01 2 3745027 3745027 T G ALLC Missense_Mutation p.I277M 0.42 tolerated(0.05) possibly_damaging(0.521) TCGA-FA-A7DS-01 3 122628986 122628986 G T SEMA5B 3'UTR 0.25 TCGA-FA-A7DS-01 3 195698266 195698266 C T SDHAP1 RNA 0.11 TCGA-FA-A7DS-01 3 32022728 32022728 G A OSBPL10 5'UTR 0.31 TCGA-FA-A7DS-01 3 32022731 32022731 G A OSBPL10 5'UTR 0.33 TCGA-FA-A7DS-01 3 32022747 32022747 C T OSBPL10 5'UTR 0.71 TCGA-FA-A7DS-01 3 38182641 38182641 T C MYD88 Missense_Mutation p.L273P 0.79 deleterious(0) probably_damaging(1) TCGA-FA-A7DS-01 4 126370300 126370300 G A FAT4 Missense_Mutation p.G2710D 0.32 probably_damaging(1) TCGA-FA-A7DS-01 4 156717564 156717564 G T GUCY1B3 Missense_Mutation p.E293D 0.06 tolerated(0.45) benign(0.129) TCGA-FA-A7DS-01 4 159514633 159514633 G A RXFP1 Missense_Mutation p.A90T 0.41 tolerated(0.68) benign(0) TCGA-FA-A7DS-01 5 1036421 1036421 G A NKD2 Missense_Mutation p.V237M 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-FA-A7DS-01 5 137801553 137801553 C T EGR1 Silent p.L35L 0.41 TCGA-FA-A7DS-01 5 170222292 170222292 G T GABRP Silent p.L107L 0.34 TCGA-FA-A7DS-01 6 152763351 152763351 C A SYNE1 Missense_Mutation p.K1289N 0.31 possibly_damaging(0.754) TCGA-FA-A7DS-01 6 26156984 26156984 G A HIST1H1E Silent p.K122K 0.38 TCGA-FA-A7DS-01 6 26285531 26285531 A T HIST1H4H Missense_Mutation p.V66E 0.39 deleterious(0) possibly_damaging(0.48) TCGA-FA-A7DS-01 6 31239047 31239047 G A HLA-C Missense_Mutation p.A141V 0.36 deleterious_low_confidence(0) possibly_damaging(0.61) TCGA-FA-A7DS-01 6 31239416 31239416 G A HLA-C Silent p.S101S 0.67 TCGA-FA-A7DS-01 6 31323097 31323098 - T HLA-B Frame_Shift_Ins p.W298Mfs*36 0.28 TCGA-FA-A7DS-01 6 37138249 37138249 C A PIM1 5'UTR 0.24 TCGA-FA-A7DS-01 6 37138309 37138309 C T PIM1 5'UTR 0.30 TCGA-FA-A7DS-01 6 37138372 37138372 C T PIM1 Silent p.N7N 0.37 TCGA-FA-A7DS-01 6 37138530 37138730 6:37138530-37138730 TGAGTCCCCGTGCTTCCCCCTTTCCTAGGCAAGGAGAAGGAGCCCCTGGAGTCGCAGT PIM1 Splice_Site p.X28_splice 0.10 TCGA-FA-A7DS-01 6 37138549 37138549 G A PIM1 Missense_Mutation p.G28D 0.55 tolerated(0.09) benign(0.374) TCGA-FA-A7DS-01 6 37138579 37138730 6:37138579-37138730 - PIM1 large deletion p.X39_splice 0.12 TCGA-FA-A7DS-01 6 37138765 37138765 C T PIM1 Silent p.I66I 0.22 TCGA-FA-A7DS-01 6 37138901 37138901 C T PIM1 Missense_Mutation p.P81S 0.26 tolerated(0.25) benign(0.302) TCGA-FA-A7DS-01 6 37138951 37138951 C T PIM1 Silent p.S97S 0.55 TCGA-FA-A7DS-01 6 37139004 37139004 G A PIM1 Missense_Mutation p.S115N 0.37 tolerated(0.11) benign(0.052) TCGA-FA-A7DS-01 6 37139042 37139042 G A PIM1 Missense_Mutation p.D128N 0.43 deleterious(0) probably_damaging(0.983) TCGA-FA-A7DS-01 6 37139203 37139203 G C PIM1 Missense_Mutation p.E181D 0.45 tolerated(0.29) benign(0.081) TCGA-FA-A7DS-01 6 37139210 37139210 C T PIM1 Missense_Mutation p.L184F 0.42 deleterious(0) probably_damaging(0.99) TCGA-FA-A7DS-01 6 37140894 37140894 C T PIM1 Missense_Mutation p.H244Y 0.33 deleterious(0) benign(0.397) TCGA-FA-A7DS-01 6 44081581 44081584 CACA - MRPL14 Frame_Shift_Del p.V145E 0.45 TCGA-FA-A7DS-01 7 100061611 100061611 C T C7orf61 Missense_Mutation p.R13Q 0.34 tolerated(0.78) benign(0) TCGA-FA-A7DS-01 7 121684560 121684560 T C PTPRZ1 Missense_Mutation p.Y2008H 0.32 deleterious(0.04) benign(0.118) TCGA-FA-A7DS-01 7 128355476 128355476 G T FAM71F1 5'UTR 0.15 TCGA-FA-A7DS-01 7 2304007 2304007 G A SNX8 Silent p.R236R 0.36 TCGA-FA-A7DS-01 7 48318518 48318518 T A ABCA13 Nonsense_Mutation p.L2576* 0.31 TCGA-FA-A7DS-01 7 82583413 82583413 C A PCLO Missense_Mutation p.A2286S 0.31 unknown(0) TCGA-FA-A7DS-01 7 91855062 91855062 T G KRIT1 Missense_Mutation p.K409T 0.34 tolerated(0.24) benign(0.002) TCGA-FA-A7DS-01 8 106815063 106815063 A C ZFPM2 Missense_Mutation p.K918T 0.34 tolerated(0.08) probably_damaging(0.962) TCGA-FA-A7DS-01 9 115818843 115818843 G A ZFP37 Silent p.S42S 0.35 TCGA-FA-A7DS-01 9 139651501 139651501 A C LCN8 Silent p.V48V 0.36 TCGA-FA-A7DS-01 9 23762079 23762079 G A ELAVL2 Nonsense_Mutation p.Q52* 0.26 TCGA-FA-A7DS-01 9 38397089 38397089 G A ALDH1B1 Silent p.V448V 0.34 TCGA-FA-A7DS-01 9 72046199 72046199 C T APBA1 3'UTR 0.41 TCGA-FA-A7DS-01 9 90219907 90219907 G T DAPK1 Missense_Mutation p.S34I 0.29 deleterious(0.02) benign(0.268) TCGA-FA-A7DS-01 X 102338561 102338561 G A NXF3 Silent p.C137C 0.33 TCGA-FA-A7DS-01 X 106845976 106845976 C T FRMPD3 Silent p.T1602T 0.35 TCGA-FA-A7DS-01 X 125299933 125299947 GCGGCGGCGGCGGCG - DCAF12L2 Intron 0.26 TCGA-FA-A7DS-01 X 136649636 136649636 C G ZIC3 Missense_Mutation p.S262R 0.31 tolerated(0.09) benign(0.065) TCGA-FA-A7DS-01 X 150348670 150348670 T A GPR50 Silent p.G205G 0.38 TCGA-FA-A7DS-01 X 152686543 152686543 C T ZFP92 Silent p.F236F 0.32 TCGA-FA-A7DS-01 X 155010849 155010849 A C SPRY3 3'UTR 0.37 TCGA-FA-A7DS-01 X 17705962 17705962 C T NHS Silent p.C222C 0.36 TCGA-FA-A7DS-01 X 18824536 18824536 T C PPEF1 Missense_Mutation p.S423P 0.34 deleterious(0) probably_damaging(1) TCGA-FA-A7DS-01 X 32407663 32407664 - T DMD Frame_Shift_Ins p.S1492Efs*19 0.25 TCGA-FA-A7DS-01 X 39933243 39933243 A G BCOR Silent p.A452A 0.39 TCGA-FA-A7DS-01 X 47919314 47919314 G T ZNF630 Missense_Mutation p.Q173K 0.32 tolerated(1) benign(0) TCGA-FA-A7DS-01 X 63568661 63568661 C T MTMR8 Missense_Mutation p.R204H 0.33 deleterious(0.02) possibly_damaging(0.887) TCGA-FA-A7Q1-01 10 133781897 133781897 G A BNIP3 3'UTR 0.53 TCGA-FA-A7Q1-01 10 135139458 135139458 C T CALY Missense_Mutation p.R176H 0.52 tolerated(0.21) benign(0.003) TCGA-FA-A7Q1-01 10 25887600 25887600 C A GPR158 Silent p.T1015T 0.35 TCGA-FA-A7Q1-01 10 332259 332259 G A DIP2C Missense_Mutation p.A1358V 0.45 tolerated(0.4) probably_damaging(0.996) TCGA-FA-A7Q1-01 10 45498774 45498774 A C ZNF22 5'UTR 0.37 TCGA-FA-A7Q1-01 10 46999724 46999724 T A GPRIN2 Missense_Mutation p.L282M 0.19 tolerated(0.07) possibly_damaging(0.805) TCGA-FA-A7Q1-01 10 61828494 61828494 C T ANK3 Missense_Mutation p.V4049I 0.38 benign(0) TCGA-FA-A7Q1-01 10 81273880 81273880 G C EIF5AL1 3'UTR 0.28 TCGA-FA-A7Q1-01 10 90773125 90773125 G C FAS Splice_Site p.X226_splice 0.67 TCGA-FA-A7Q1-01 10 96084266 96084266 C T PLCE1 Missense_Mutation p.A2221V 0.37 tolerated(0.12) benign(0.33) TCGA-FA-A7Q1-01 11 1016749 1016749 T C MUC6 Missense_Mutation p.T2018A 0.05 probably_damaging(0.977) TCGA-FA-A7Q1-01 11 120989139 120989139 C T TECTA Silent p.C305C 0.47 TCGA-FA-A7Q1-01 11 128391933 128391933 G A ETS1 Intron 0.45 TCGA-FA-A7Q1-01 11 20066704 20066704 C T NAV2 Silent p.A1153A 0.33 TCGA-FA-A7Q1-01 11 56310329 56310329 C T OR5M11 Silent p.T135T 0.53 TCGA-FA-A7Q1-01 11 62564806 62564806 G A NXF1 Missense_Mutation p.T369M 0.48 tolerated(0.16) benign(0.001) TCGA-FA-A7Q1-01 11 64876036 64876036 A G VPS51 Missense_Mutation p.N365D 0.39 deleterious(0.04) possibly_damaging(0.907) TCGA-FA-A7Q1-01 11 67271697 67271697 C T PITPNM1 Intron 0.64 TCGA-FA-A7Q1-01 11 82872427 82872427 T G PCF11 Missense_Mutation p.V84G 0.40 deleterious(0) probably_damaging(0.992) TCGA-FA-A7Q1-01 11 86133616 86133616 G T CCDC81 Silent p.R606R 0.47 TCGA-FA-A7Q1-01 11 902268 902268 G A CHID1 Silent p.P133P 0.40 TCGA-FA-A7Q1-01 11 92495108 92495108 C G FAT3 Silent p.P1252P 0.39 TCGA-FA-A7Q1-01 12 102590595 102590595 A G PARPBP 3'Flank 0.35 TCGA-FA-A7Q1-01 12 110890809 110890809 C T GPN3 3'UTR 0.54 TCGA-FA-A7Q1-01 12 122460020 122460020 C T BCL7A Missense_Mutation p.A8V 0.47 deleterious(0.01) benign(0.416) TCGA-FA-A7Q1-01 12 132837584 132837584 G A GALNT9 Silent p.T237T 0.59 TCGA-FA-A7Q1-01 12 133240614 133240614 G A POLE Silent p.G894G 0.19 TCGA-FA-A7Q1-01 12 25398255 25398255 G T KRAS Missense_Mutation p.Q22K 0.60 deleterious(0.01) probably_damaging(0.986) TCGA-FA-A7Q1-01 12 33592482 33592483 - T SYT10 5'UTR 0.53 TCGA-FA-A7Q1-01 12 53216988 53216988 C T KRT79 Silent p.A393A 0.67 TCGA-FA-A7Q1-01 12 53911170 53911170 A T ATF7 Intron 0.58 TCGA-FA-A7Q1-01 12 58197059 58197059 C T AVIL Missense_Mutation p.D645N 0.29 deleterious(0) probably_damaging(0.971) TCGA-FA-A7Q1-01 12 7556213 7556213 C A CD163L1 Missense_Mutation p.E442D 0.54 deleterious(0) probably_damaging(0.999) TCGA-FA-A7Q1-01 12 85638828 85638828 C A LRRIQ1 3'UTR 0.24 TCGA-FA-A7Q1-01 13 103316014 103316017 ATTT - TPP2 Frame_Shift_Del p.Y1042Tfs*3 0.88 TCGA-FA-A7Q1-01 13 103528055 103528055 G T ERCC5 Missense_Mutation p.E1121D 0.92 tolerated(0.41) benign(0.004) TCGA-FA-A7Q1-01 13 21562440 21562440 C T LATS2 Silent p.A493A 0.67 TCGA-FA-A7Q1-01 14 106236844 106236844 G T IGHG3 Missense_Mutation p.T122K 0.48 tolerated(1) benign(0) TCGA-FA-A7Q1-01 14 106237522 106237522 G A IGHG3 Silent p.S74S 0.41 TCGA-FA-A7Q1-01 14 106237693 106237693 G A IGHG3 Silent p.S17S 0.40 TCGA-FA-A7Q1-01 14 106405880 106405880 C G IGHV6-1 Missense_Mutation p.V32L 0.80 tolerated(0.05) benign(0.18) TCGA-FA-A7Q1-01 14 106478192 106478192 G A IGHV4-4 Missense_Mutation p.S89L 0.90 deleterious_low_confidence(0.01) benign(0.076) TCGA-FA-A7Q1-01 14 106478248 106478248 G T IGHV4-4 Silent p.I70I 0.88 TCGA-FA-A7Q1-01 14 107170039 107170039 C G IGHV1-69 Missense_Mutation p.Q81H 0.39 deleterious(0.01) possibly_damaging(0.894) TCGA-FA-A7Q1-01 14 107170121 107170121 C T IGHV1-69 Missense_Mutation p.S54N 0.40 tolerated(0.35) benign(0.003) TCGA-FA-A7Q1-01 14 107178828 107178828 C A IGHV2-70 Missense_Mutation p.A117S 0.42 deleterious(0.03) benign(0.017) TCGA-FA-A7Q1-01 14 107178838 107178838 C A IGHV2-70 Silent p.T113T 0.39 TCGA-FA-A7Q1-01 14 24108080 24108080 T A DHRS2 Missense_Mutation p.S3T 0.38 tolerated_low_confidence(0.13) benign(0.002) TCGA-FA-A7Q1-01 14 24802153 24802153 G A RP11-934B9.3 Missense_Mutation p.R134C 0.49 deleterious_low_confidence(0.01) unknown(0) TCGA-FA-A7Q1-01 14 73640277 73640277 C T PSEN1 Silent p.I114I 0.37 TCGA-FA-A7Q1-01 15 20739696 20739696 C T GOLGA6L6 Missense_Mutation p.R685Q 0.12 unknown(0) TCGA-FA-A7Q1-01 15 27772698 27772698 G A GABRG3 Missense_Mutation p.A329T 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-FA-A7Q1-01 15 33359827 33359827 C A FMN1 Missense_Mutation p.V87F 0.41 tolerated_low_confidence(0.16) unknown(0) TCGA-FA-A7Q1-01 15 59506886 59506886 C A MYO1E Nonsense_Mutation p.E381* 0.40 TCGA-FA-A7Q1-01 15 63128104 63128104 G A TLN2 Silent p.A2402A 0.39 TCGA-FA-A7Q1-01 15 71055671 71055671 C T UACA Missense_Mutation p.A26T 0.49 tolerated(0.9) benign(0.002) TCGA-FA-A7Q1-01 15 73660631 73660631 G A HCN4 5'UTR 0.48 TCGA-FA-A7Q1-01 15 75094222 75094223 GA - CSK Frame_Shift_Del p.K361Efs*5 0.30 TCGA-FA-A7Q1-01 15 75980082 75980082 G A CSPG4 Silent p.S1108S 0.45 TCGA-FA-A7Q1-01 15 86077121 86077121 T A AKAP13 Intron 0.30 TCGA-FA-A7Q1-01 16 11001721 11001721 G A CIITA Missense_Mutation p.R791K 0.53 tolerated(0.73) benign(0) TCGA-FA-A7Q1-01 16 11348656 11348656 C T SOCS1 3'UTR 0.50 TCGA-FA-A7Q1-01 16 11348972 11348972 C A SOCS1 Nonsense_Mutation p.G122* 0.42 TCGA-FA-A7Q1-01 16 11349096 11349096 G A SOCS1 Silent p.Y80Y 0.36 TCGA-FA-A7Q1-01 16 20322559 20322559 C G GP2 Missense_Mutation p.A534P 0.55 tolerated(0.08) benign(0.014) TCGA-FA-A7Q1-01 16 2226351 2226351 G A TRAF7 Missense_Mutation p.R655Q 0.46 tolerated(0.06) possibly_damaging(0.876) TCGA-FA-A7Q1-01 16 30380609 30380609 A T TBC1D10B Missense_Mutation p.L299Q 0.31 deleterious(0.02) benign(0.222) TCGA-FA-A7Q1-01 16 30583567 30583567 C A ZNF688 5'UTR 0.63 TCGA-FA-A7Q1-01 16 3828721 3828721 A G CREBBP Missense_Mutation p.Y641H 0.41 probably_damaging(1) TCGA-FA-A7Q1-01 16 51175886 51175886 C T SALL1 Missense_Mutation p.E83K 0.58 tolerated(0.19) benign(0.003) TCGA-FA-A7Q1-01 16 53256588 53256591 AAAG - CHD9 Frame_Shift_Del p.K608Mfs*18 0.28 TCGA-FA-A7Q1-01 16 61687317 61687317 G A CDH8 3'UTR 0.44 TCGA-FA-A7Q1-01 16 65016083 65016083 A G CDH11 Missense_Mutation p.V374A 0.33 deleterious(0.03) probably_damaging(0.921) TCGA-FA-A7Q1-01 16 70515315 70515315 G A COG4 Nonsense_Mutation p.R728* 0.26 TCGA-FA-A7Q1-01 16 71888561 71888561 T A ATXN1L 3'UTR 0.31 TCGA-FA-A7Q1-01 16 88039849 88039849 G A BANP Silent p.T203T 0.60 TCGA-FA-A7Q1-01 17 11520880 11520880 C T DNAH9 Missense_Mutation p.R353C 0.57 benign(0.005) TCGA-FA-A7Q1-01 17 1840012 1840012 C T RTN4RL1 Silent p.A368A 0.30 TCGA-FA-A7Q1-01 17 21117667 21117667 G A TMEM11 5'UTR 0.31 TCGA-FA-A7Q1-01 17 21731262 21731262 C - UBBP4 Intron 0.27 TCGA-FA-A7Q1-01 17 30551748 30551748 G A RHOT1 Missense_Mutation p.R691Q 0.52 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-FA-A7Q1-01 17 36865739 36865739 C T MLLT6 Nonsense_Mutation p.Q155* 0.28 TCGA-FA-A7Q1-01 17 37944556 37944556 C T IKZF3 Missense_Mutation p.E222K 0.60 deleterious(0) probably_damaging(0.995) TCGA-FA-A7Q1-01 17 56408608 56408608 C A BZRAP1 5'Flank 0.62 TCGA-FA-A7Q1-01 17 56408616 56408616 A T BZRAP1 5'Flank 0.28 TCGA-FA-A7Q1-01 17 56408621 56408621 A G BZRAP1 5'Flank 0.30 TCGA-FA-A7Q1-01 17 59560607 59560607 C T TBX4 Silent p.P456P 0.34 TCGA-FA-A7Q1-01 17 61843512 61843512 A G CCDC47 Silent p.C8C 0.34 TCGA-FA-A7Q1-01 17 75212409 75212409 G A SEC14L1 Intron 0.57 TCGA-FA-A7Q1-01 17 78184539 78184539 G A SGSH Silent p.T407T 0.57 TCGA-FA-A7Q1-01 17 79650890 79650890 C G ARL16 5'UTR 0.41 TCGA-FA-A7Q1-01 17 8079332 8079332 G T TMEM107 Missense_Mutation p.Q34K 0.05 tolerated(1) benign(0.06) TCGA-FA-A7Q1-01 18 30350456 30350456 G C KLHL14 Missense_Mutation p.C33W 0.34 deleterious(0) probably_damaging(0.996) TCGA-FA-A7Q1-01 18 6837261 6837261 G A ARHGAP28 5'UTR 0.50 TCGA-FA-A7Q1-01 19 1014261 1014261 C T TMEM259 Missense_Mutation p.S146N 0.11 tolerated(0.48) benign(0.009) TCGA-FA-A7Q1-01 19 10335123 10335123 C T S1PR2 Silent p.G153G 0.78 TCGA-FA-A7Q1-01 19 11363469 11363469 G A DOCK6 Missense_Mutation p.P100S 0.09 deleterious(0.02) probably_damaging(0.967) TCGA-FA-A7Q1-01 19 15760884 15760884 T C CYP4F3 Missense_Mutation p.V270A 0.34 deleterious(0.03) benign(0.424) TCGA-FA-A7Q1-01 19 15852443 15852443 C T OR10H3 Missense_Mutation p.R81C 0.43 deleterious(0.03) benign(0.014) TCGA-FA-A7Q1-01 19 16436643 16436643 C T KLF2 Missense_Mutation p.A231V 0.60 tolerated(0.24) unknown(0) TCGA-FA-A7Q1-01 19 16437842 16437842 G C KLF2 Nonstop_Mutation p.*356Yext*62 0.46 TCGA-FA-A7Q1-01 19 17166719 17166719 G A HAUS8 Silent p.L247L 0.45 TCGA-FA-A7Q1-01 19 17837421 17837421 G A MAP1S Missense_Mutation p.A410T 0.46 tolerated(0.8) benign(0.359) TCGA-FA-A7Q1-01 19 18899109 18899109 G A COMP Missense_Mutation p.P296L 0.58 deleterious(0) probably_damaging(1) TCGA-FA-A7Q1-01 19 22848027 22848027 A G ZNF492 Missense_Mutation p.K519R 0.41 tolerated(0.39) benign(0) TCGA-FA-A7Q1-01 19 35448667 35448667 A C ZNF792 3'UTR 0.67 TCGA-FA-A7Q1-01 19 35610154 35610154 G A FXYD3 Silent p.P52P 0.43 TCGA-FA-A7Q1-01 19 37904751 37904751 T C ZNF569 Missense_Mutation p.Y270C 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-FA-A7Q1-01 19 40741861 40741861 G A AKT2 Missense_Mutation p.R371C 0.30 deleterious(0.04) probably_damaging(0.94) TCGA-FA-A7Q1-01 19 41073666 41073666 C T SPTBN4 Missense_Mutation p.A2145V 0.34 deleterious(0.05) benign(0.288) TCGA-FA-A7Q1-01 19 46347378 46347378 G C SYMPK Missense_Mutation p.L253V 0.32 deleterious(0) probably_damaging(0.974) TCGA-FA-A7Q1-01 19 4676459 4676459 G A DPP9 3'UTR 0.44 TCGA-FA-A7Q1-01 19 50397663 50397663 C G IL4I1 Missense_Mutation p.K165N 0.39 tolerated(0.42) benign(0.02) TCGA-FA-A7Q1-01 19 50779294 50779294 C T MYH14 Missense_Mutation p.R1172W 0.45 deleterious(0) probably_damaging(0.999) TCGA-FA-A7Q1-01 19 51293729 51293729 C G ACPT Missense_Mutation p.L20V 0.05 tolerated(0.27) benign(0.001) TCGA-FA-A7Q1-01 19 52954492 52954492 C T ZNF578 5'Flank 0.31 TCGA-FA-A7Q1-01 19 58024463 58024463 G C ZNF773 3'Flank 0.42 TCGA-FA-A7Q1-01 19 6590875 6590875 G A CD70 Nonsense_Mutation p.Q47* 0.80 TCGA-FA-A7Q1-01 1 100327164 100327164 G A AGL Missense_Mutation p.R63H 0.41 tolerated(0.11) benign(0.005) TCGA-FA-A7Q1-01 1 10479771 10479771 G A PGD Missense_Mutation p.G473S 0.55 deleterious(0.01) possibly_damaging(0.828) TCGA-FA-A7Q1-01 1 117122394 117122394 C T IGSF3 Missense_Mutation p.R1005H 0.43 tolerated(0.47) benign(0.001) TCGA-FA-A7Q1-01 1 145075777 145075777 G A PDE4DIP Missense_Mutation p.T29M 0.15 deleterious_low_confidence(0) possibly_damaging(0.482) TCGA-FA-A7Q1-01 1 147955236 147955236 G A PPIAL4A Missense_Mutation p.R37C 0.76 tolerated_low_confidence(0.16) benign(0.038) TCGA-FA-A7Q1-01 1 149858219 149858219 C A HIST2H2BE 5'UTR 0.44 TCGA-FA-A7Q1-01 1 152326298 152326298 T A FLG2 Missense_Mutation p.T1322S 0.40 possibly_damaging(0.636) TCGA-FA-A7Q1-01 1 155917765 155917765 G A ARHGEF2 Missense_Mutation p.R977C 0.43 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-FA-A7Q1-01 1 156386596 156386596 C G C1orf61 Missense_Mutation p.L12F 0.22 tolerated_low_confidence(0.46) possibly_damaging(0.765) TCGA-FA-A7Q1-01 1 15769988 15769990 AGA - CTRC In_Frame_Del p.K145del 0.37 TCGA-FA-A7Q1-01 1 161026256 161026256 G A ARHGAP30 Silent p.C89C 0.29 TCGA-FA-A7Q1-01 1 168014147 168014147 A G DCAF6 Missense_Mutation p.D647G 0.60 tolerated_low_confidence(0.09) possibly_damaging(0.839) TCGA-FA-A7Q1-01 1 173916598 173916598 G A RC3H1 Silent p.I882I 0.34 TCGA-FA-A7Q1-01 1 180080314 180080314 G A CEP350 3'UTR 0.24 TCGA-FA-A7Q1-01 1 1850005 1850005 C T TMEM52 Intron 0.45 TCGA-FA-A7Q1-01 1 203821443 203821443 C A ZC3H11A Silent p.G783G 0.29 TCGA-FA-A7Q1-01 1 22207014 22207014 G A HSPG2 Silent p.R679R 0.43 TCGA-FA-A7Q1-01 1 226252097 226252097 A C H3F3A Missense_Mutation p.K15N 0.64 deleterious_low_confidence(0) benign(0.123) TCGA-FA-A7Q1-01 1 22838451 22838451 A C ZBTB40 Missense_Mutation p.K762T 0.42 deleterious(0.04) benign(0.001) TCGA-FA-A7Q1-01 1 233802434 233802434 C T KCNK1 Missense_Mutation p.T150M 0.32 deleterious(0.03) probably_damaging(0.995) TCGA-FA-A7Q1-01 1 240071868 240071868 G C CHRM3 Missense_Mutation p.G373R 0.20 tolerated(0.12) probably_damaging(0.992) TCGA-FA-A7Q1-01 1 243437859 243437859 T C SDCCAG8 Silent p.H107H 0.26 TCGA-FA-A7Q1-01 1 248202362 248202362 C T OR2L2 Nonsense_Mutation p.R265* 0.59 TCGA-FA-A7Q1-01 1 27177692 27177692 C T ZDHHC18 Silent p.L302L 0.46 TCGA-FA-A7Q1-01 1 32124550 32124550 G A COL16A1 Missense_Mutation p.P1299S 0.35 unknown(0) TCGA-FA-A7Q1-01 1 41213216 41213216 G A NFYC Missense_Mutation p.R39Q 0.43 deleterious(0) possibly_damaging(0.846) TCGA-FA-A7Q1-01 1 60491070 60491070 T A C1orf87 Intron 0.43 TCGA-FA-A7Q1-01 1 86905898 86905898 A C CLCA2 Missense_Mutation p.K424T 0.39 tolerated(0.27) benign(0.05) TCGA-FA-A7Q1-01 1 900388 900388 G - KLHL17 Frame_Shift_Del p.G584Vfs*100 0.31 TCGA-FA-A7Q1-01 1 94486848 94486848 C T ABCA4 Missense_Mutation p.V1656I 0.45 tolerated(0.11) benign(0.022) TCGA-FA-A7Q1-01 20 34242575 34242575 G T RBM12 Missense_Mutation p.P224T 0.46 tolerated_low_confidence(0.25) unknown(0) TCGA-FA-A7Q1-01 20 34328444 34328444 T C RBM39 Intron 0.25 TCGA-FA-A7Q1-01 20 34542270 34542270 G A SCAND1 5'UTR 0.37 TCGA-FA-A7Q1-01 20 43385538 43385538 C A RIMS4 Splice_Site p.X198_splice 0.48 TCGA-FA-A7Q1-01 20 44519855 44519855 G A CTSA 5'UTR 0.50 TCGA-FA-A7Q1-01 20 55066618 55066618 G A GCNT7 Missense_Mutation p.R308C 0.44 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-FA-A7Q1-01 20 56195323 56195323 C T ZBP1 Missense_Mutation p.R10K 0.41 tolerated(0.98) benign(0) TCGA-FA-A7Q1-01 21 45064273 45064273 T C HSF2BP Missense_Mutation p.N63S 0.38 tolerated(0.72) benign(0.006) TCGA-FA-A7Q1-01 22 18314712 18314712 C T MICAL3 Missense_Mutation p.G988E 0.49 benign(0.001) TCGA-FA-A7Q1-01 22 21288415 21288415 C T CRKL Silent p.S220S 0.39 TCGA-FA-A7Q1-01 22 22985241 22985241 G A GGTLC2 5'Flank 0.39 TCGA-FA-A7Q1-01 22 23154752 23154752 C T IGLV3-10 Silent p.Y107Y 0.38 TCGA-FA-A7Q1-01 22 23213958 23213958 C T IGLV4-3 Missense_Mutation p.L39F 0.38 deleterious(0.01) benign(0.283) TCGA-FA-A7Q1-01 22 23213966 23213966 C T IGLV4-3 Silent p.C41C 0.40 TCGA-FA-A7Q1-01 22 23213981 23213981 G A IGLV4-3 Silent p.E46E 0.42 TCGA-FA-A7Q1-01 22 23214002 23214002 A G IGLV4-3 Silent p.E53E 0.33 TCGA-FA-A7Q1-01 22 23214167 23214167 G T IGLV4-3 Missense_Mutation p.E108D 0.30 tolerated(1) benign(0.017) TCGA-FA-A7Q1-01 22 23223326 23223326 C A IGLV3-1 Silent p.S32S 0.61 TCGA-FA-A7Q1-01 22 23223439 23223439 G C IGLV3-1 Missense_Mutation p.S70T 0.70 tolerated(0.13) benign(0.008) TCGA-FA-A7Q1-01 22 23223550 23223550 A C IGLV3-1 Missense_Mutation p.Q107P 0.75 deleterious(0.02) possibly_damaging(0.796) TCGA-FA-A7Q1-01 22 23243406 23243406 C G IGLC2 Missense_Mutation p.S84R 0.25 benign(0.023) TCGA-FA-A7Q1-01 22 23248691 23248691 C G IGLC3 Missense_Mutation p.Q61E 0.25 benign(0.163) TCGA-FA-A7Q1-01 22 23248706 23248706 T A IGLC3 Missense_Mutation p.Y66N 0.24 probably_damaging(0.991) TCGA-FA-A7Q1-01 22 23248776 23248776 T G IGLC3 Missense_Mutation p.V89G 0.13 probably_damaging(0.994) TCGA-FA-A7Q1-01 22 30640034 30640034 T C LIF Missense_Mutation p.E72G 0.13 deleterious(0) possibly_damaging(0.658) TCGA-FA-A7Q1-01 22 38690161 38690163 GAG - CSNK1E In_Frame_Del p.S391del 0.38 TCGA-FA-A7Q1-01 22 50727961 50727961 G A PLXNB2 Silent p.C351C 0.63 TCGA-FA-A7Q1-01 2 114256856 114256856 G A FOXD4L1 Missense_Mutation p.R8H 0.41 tolerated_low_confidence(0.18) benign(0.059) TCGA-FA-A7Q1-01 2 152486101 152486101 G A NEB Silent p.D3261D 0.42 TCGA-FA-A7Q1-01 2 170134323 170134323 C T LRP2 Silent p.S568S 0.49 TCGA-FA-A7Q1-01 2 174062701 174062701 T C MLTK Intron 0.62 TCGA-FA-A7Q1-01 2 179593297 179593297 G A TTN Silent p.S6452S 0.48 TCGA-FA-A7Q1-01 2 185463678 185463678 G A ZNF804A 5'UTR 0.45 TCGA-FA-A7Q1-01 2 191184513 191184513 A G HIBCH 5'UTR 0.38 TCGA-FA-A7Q1-01 2 202501530 202501530 A C TMEM237 Missense_Mutation p.L72R 0.55 tolerated(0.49) possibly_damaging(0.48) TCGA-FA-A7Q1-01 2 202902996 202902997 - A FZD7 3'UTR 0.29 TCGA-FA-A7Q1-01 2 206659530 206659530 C T NRP2 Silent p.G848G 0.44 TCGA-FA-A7Q1-01 2 27456274 27456274 G A CAD Missense_Mutation p.R1029Q 0.42 deleterious(0.03) probably_damaging(0.974) TCGA-FA-A7Q1-01 2 37247855 37247855 C T HEATR5B Silent p.A1326A 0.43 TCGA-FA-A7Q1-01 2 42180352 42180352 G A C2orf91 Silent p.Y28Y 0.38 TCGA-FA-A7Q1-01 2 73677595 73677595 C A ALMS1 Nonsense_Mutation p.S1313* 0.38 TCGA-FA-A7Q1-01 2 74328124 74328124 G A TET3 Silent p.P1268P 0.32 TCGA-FA-A7Q1-01 2 86850081 86850081 C T RNF103-CHMP3 Intron 0.50 TCGA-FA-A7Q1-01 2 9002786 9002786 G A MBOAT2 Silent p.H373H 0.70 TCGA-FA-A7Q1-01 2 90211994 90211994 C T IGKV3D-11 Missense_Mutation p.A29V 0.35 deleterious(0.05) benign(0.125) TCGA-FA-A7Q1-01 2 96689732 96689732 T C GPAT2 Missense_Mutation p.Y612C 0.39 tolerated(0.12) possibly_damaging(0.878) TCGA-FA-A7Q1-01 3 114070301 114070301 G C ZBTB20 Silent p.G208G 0.37 TCGA-FA-A7Q1-01 3 121414039 121414039 G A GOLGB1 Silent p.N1777N 0.39 TCGA-FA-A7Q1-01 3 128848843 128848843 G A ISY1 3'UTR 0.24 TCGA-FA-A7Q1-01 3 142090122 142090122 C T XRN1 Silent p.V1009V 0.47 TCGA-FA-A7Q1-01 3 176750916 176750916 A G TBL1XR1 Missense_Mutation p.F420S 0.41 deleterious(0) probably_damaging(0.985) TCGA-FA-A7Q1-01 3 179537727 179537727 C T PEX5L Nonsense_Mutation p.W287* 0.39 TCGA-FA-A7Q1-01 3 49413010 49413010 G A RHOA Missense_Mutation p.R5W 0.45 deleterious(0.02) benign(0.007) TCGA-FA-A7Q1-01 3 49751413 49751413 C T RNF123 Silent p.L970L 0.46 TCGA-FA-A7Q1-01 4 100756851 100756851 A C DAPP1 Missense_Mutation p.Y58S 0.47 deleterious(0) probably_damaging(0.991) TCGA-FA-A7Q1-01 4 106156043 106156043 C T TET2 Missense_Mutation p.S315F 0.43 deleterious(0) benign(0.042) TCGA-FA-A7Q1-01 4 114682353 114682353 G A CAMK2D 5'Flank 0.31 TCGA-FA-A7Q1-01 4 4862081 4862081 C G MSX1 Missense_Mutation p.S152C 0.25 deleterious(0) benign(0.112) TCGA-FA-A7Q1-01 4 65165691 65165691 C A TECRL Splice_Site p.X258_splice 0.40 TCGA-FA-A7Q1-01 4 76861999 76861999 C T NAAA Missense_Mutation p.R35H 0.35 tolerated(0.08) benign(0.328) TCGA-FA-A7Q1-01 4 77661110 77661110 A T SHROOM3 Missense_Mutation p.K595I 0.38 deleterious(0.01) benign(0.024) TCGA-FA-A7Q1-01 4 7776268 7776268 G A AFAP1 Intron 0.57 TCGA-FA-A7Q1-01 4 92519732 92519732 C T CCSER1 Nonsense_Mutation p.R743* 0.43 TCGA-FA-A7Q1-01 5 121188183 121188183 G A FTMT Silent p.L175L 0.59 TCGA-FA-A7Q1-01 5 127693004 127693004 C T FBN2 Missense_Mutation p.G880S 0.24 deleterious(0) possibly_damaging(0.775) TCGA-FA-A7Q1-01 5 131825149 131825149 T C IRF1 Missense_Mutation p.M8V 0.67 deleterious(0) probably_damaging(0.96) TCGA-FA-A7Q1-01 5 139887371 139887371 A G ANKHD1 Missense_Mutation p.T1185A 0.60 unknown(0) TCGA-FA-A7Q1-01 5 140011945 140011945 G A CD14 Silent p.G208G 0.51 TCGA-FA-A7Q1-01 5 140595386 140595386 C T PCDHB13 Missense_Mutation p.P564L 0.35 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-FA-A7Q1-01 5 154395805 154395805 C T KIF4B Missense_Mutation p.R796W 0.54 deleterious(0) possibly_damaging(0.816) TCGA-FA-A7Q1-01 5 162894753 162894753 A C HMMR Missense_Mutation p.E91A 0.23 deleterious(0) possibly_damaging(0.846) TCGA-FA-A7Q1-01 5 171305089 171305089 T A FBXW11 Silent p.G278G 0.21 TCGA-FA-A7Q1-01 5 23527595 23527595 G T PRDM9 Missense_Mutation p.G800W 0.60 deleterious(0) unknown(0) TCGA-FA-A7Q1-01 5 40958155 40958155 G A C7 Silent p.L427L 0.36 TCGA-FA-A7Q1-01 5 41038932 41038932 G T MROH2B Missense_Mutation p.A707E 0.27 tolerated(0.27) benign(0.016) TCGA-FA-A7Q1-01 5 41038933 41038933 C T MROH2B Missense_Mutation p.A707T 0.26 tolerated(0.38) benign(0.062) TCGA-FA-A7Q1-01 5 95224448 95224448 C A ELL2 3'UTR 0.62 TCGA-FA-A7Q1-01 6 17788042 17788042 A C KIF13A Missense_Mutation p.L1109R 0.40 deleterious(0) probably_damaging(1) TCGA-FA-A7Q1-01 6 25701447 25701447 G A SCGN Missense_Mutation p.G239R 0.89 tolerated(0.15) possibly_damaging(0.725) TCGA-FA-A7Q1-01 6 26031889 26031889 C G HIST1H3B Missense_Mutation p.E134Q 0.85 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-FA-A7Q1-01 6 27860757 27860757 C T HIST1H2AM Silent p.E57E 0.89 TCGA-FA-A7Q1-01 6 28253469 28253469 C T PGBD1 Missense_Mutation p.P180S 0.83 tolerated_low_confidence(0.5) benign(0.005) TCGA-FA-A7Q1-01 6 2890535 2890535 T C SERPINB9 Silent p.A331A 0.79 TCGA-FA-A7Q1-01 6 33041377 33041377 G T HLA-DPA1 5'UTR 0.12 TCGA-FA-A7Q1-01 6 43477491 43477491 C G LRRC73 Missense_Mutation p.E11D 0.94 tolerated(0.09) probably_damaging(0.956) TCGA-FA-A7Q1-01 6 55988901 55988901 T A COL21A1 Nonsense_Mutation p.R573* 0.84 TCGA-FA-A7Q1-01 6 69772924 69772924 C A BAI3 Missense_Mutation p.A811D 0.77 deleterious(0.04) benign(0.036) TCGA-FA-A7Q1-01 7 100367591 100367591 C T ZAN Missense_Mutation p.P1748S 0.37 unknown(0) TCGA-FA-A7Q1-01 7 103835607 103835607 G T ORC5 Missense_Mutation p.F179L 0.49 deleterious(0.01) benign(0.113) TCGA-FA-A7Q1-01 7 128492881 128492881 G A FLNC Splice_Site p.X2002_splice 0.36 TCGA-FA-A7Q1-01 7 138711218 138711218 C T ZC3HAV1L 3'UTR 0.48 TCGA-FA-A7Q1-01 7 143956486 143956486 C T OR2A7 Missense_Mutation p.R79Q 0.25 tolerated(0.9) benign(0) TCGA-FA-A7Q1-01 7 149421762 149421762 C T KRBA1 Silent p.T316T 0.37 TCGA-FA-A7Q1-01 7 43360271 43360271 C A HECW1 Missense_Mutation p.N130K 0.43 deleterious(0) probably_damaging(0.999) TCGA-FA-A7Q1-01 7 51203882 51203882 T C COBL Silent p.P310P 0.31 TCGA-FA-A7Q1-01 7 73008410 73008410 G T MLXIPL Intron 0.15 TCGA-FA-A7Q1-01 7 80418691 80418691 A T SEMA3C Missense_Mutation p.Y429N 0.41 deleterious(0) possibly_damaging(0.892) TCGA-FA-A7Q1-01 8 139164971 139164971 C T FAM135B Missense_Mutation p.D583N 0.60 tolerated(0.11) benign(0.081) TCGA-FA-A7Q1-01 8 142202753 142202754 - AA DENND3 Frame_Shift_Ins p.K1131Rfs*22 0.21 TCGA-FA-A7Q1-01 8 37555934 37555934 C T ZNF703 Silent p.S505S 1.00 TCGA-FA-A7Q1-01 8 41504053 41504053 T C NKX6-3 Missense_Mutation p.D108G 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-FA-A7Q1-01 8 68123848 68123848 A C ARFGEF1 Missense_Mutation p.D1563E 0.39 tolerated(0.17) benign(0.187) TCGA-FA-A7Q1-01 8 87111240 87111240 G T ATP6V0D2 Silent p.V11V 0.06 TCGA-FA-A7Q1-01 9 118097 118097 C T FOXD4 Missense_Mutation p.R8H 0.13 tolerated(0.25) benign(0.03) TCGA-FA-A7Q1-01 9 136404949 136404949 C T ADAMTSL2 Silent p.S122S 0.33 TCGA-FA-A7Q1-01 9 137726979 137726979 C T COL5A1 Silent p.L1767L 0.48 TCGA-FA-A7Q1-01 9 138664597 138664597 G A KCNT1 Missense_Mutation p.R682Q 0.55 tolerated(0.24) benign(0.001) TCGA-FA-A7Q1-01 9 138903792 138903792 C T NACC2 Missense_Mutation p.R445H 0.47 deleterious(0.02) probably_damaging(0.957) TCGA-FA-A7Q1-01 9 91606581 91606581 C T C9orf47 Missense_Mutation p.P148L 0.28 tolerated_low_confidence(0.22) possibly_damaging(0.859) TCGA-FA-A7Q1-01 9 95021262 95021262 G A IARS Silent p.S630S 0.22 TCGA-FA-A7Q1-01 9 97203305 97203305 C T HIATL1 Missense_Mutation p.S145L 0.36 deleterious(0) possibly_damaging(0.794) TCGA-FA-A7Q1-01 X 101624570 101624570 A G NXF2B Silent p.P107P 0.15 TCGA-FA-A7Q1-01 X 105855496 105855496 C A CXorf57 Silent p.T62T 0.35 TCGA-FA-A7Q1-01 X 111090430 111090430 G T TRPC5 Missense_Mutation p.L538I 0.25 deleterious(0) probably_damaging(0.993) TCGA-FA-A7Q1-01 X 11160430 11160430 A C ARHGAP6 Missense_Mutation p.L727R 0.31 tolerated(0.16) benign(0.106) TCGA-FA-A7Q1-01 X 125685036 125685036 G T DCAF12L1 3'UTR 0.40 TCGA-FA-A7Q1-01 X 131762214 131762214 G A HS6ST2 3'UTR 0.30 TCGA-FA-A7Q1-01 X 135301796 135301796 T C MAP7D3 Missense_Mutation p.K841E 0.29 deleterious(0) probably_damaging(0.917) TCGA-FA-A7Q1-01 X 144337538 144337538 G A SPANXN1 3'UTR 0.19 TCGA-FA-A7Q1-01 X 149924311 149924311 C T MTMR1 Nonsense_Mutation p.R603* 0.59 TCGA-FA-A7Q1-01 X 153578209 153578209 T A FLNA Missense_Mutation p.T2454S 0.21 tolerated(0.1) possibly_damaging(0.486) TCGA-FA-A7Q1-01 X 153775072 153775072 C T G6PD Missense_Mutation p.G5D 0.11 deleterious_low_confidence(0.01) benign(0.262) TCGA-FA-A7Q1-01 X 155004002 155004002 C A SPRY3 Missense_Mutation p.P157T 0.34 deleterious(0.01) benign(0.247) TCGA-FA-A7Q1-01 X 155171623 155171623 G T VAMP7 Missense_Mutation p.K201N 0.24 deleterious_low_confidence(0) unknown(0) TCGA-FA-A7Q1-01 X 16707682 16707682 C T CTPS2 Missense_Mutation p.V255M 0.25 tolerated(0.06) benign(0.038) TCGA-FA-A7Q1-01 X 27839462 27839462 A C MAGEB10 Missense_Mutation p.E13D 0.19 deleterious(0.03) probably_damaging(0.959) TCGA-FA-A7Q1-01 X 33146324 33146332 GCTTTTTGC CCTTTTGG DMD Intron 0.23 TCGA-FA-A7Q1-01 X 33146419 33146419 C T DMD Intron 0.32 TCGA-FA-A7Q1-01 X 48837643 48837643 G A GRIPAP1 Silent p.N638N 0.63 TCGA-FA-A7Q1-01 X 50122659 50122659 C A DGKK RNA 0.55 TCGA-FA-A7Q1-01 X 70342120 70342120 G T MED12 Missense_Mutation p.G391V 0.33 probably_damaging(1) TCGA-FA-A7Q1-01 X 71358413 71358413 A G NHSL2 Missense_Mutation p.S339G 0.59 tolerated(0.35) benign(0.075) TCGA-FA-A7Q1-01 X 86869446 86869446 C A KLHL4 Silent p.L200L 0.29 TCGA-FA-A82F-01 10 101090212 101090212 G T CNNM1 Silent p.S356S 0.06 TCGA-FA-A82F-01 10 118401749 118401749 G T PNLIPRP2 Silent p.L433L 0.24 TCGA-FA-A82F-01 10 11912929 11912929 C T PROSER2 3'UTR 0.39 TCGA-FA-A82F-01 10 38121222 38121222 T G ZNF248 Missense_Mutation p.Y354S 0.20 deleterious(0.03) benign(0.116) TCGA-FA-A82F-01 10 54527908 54527908 A C MBL2 Missense_Mutation p.F246V 0.21 deleterious(0) probably_damaging(0.985) TCGA-FA-A82F-01 10 95791436 95791436 C T PLCE1 Silent p.D211D 0.32 TCGA-FA-A82F-01 11 10051375 10051375 G A SBF2 Silent p.V150V 0.31 TCGA-FA-A82F-01 11 10523046 10523046 G A AMPD3 Missense_Mutation p.R593Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-FA-A82F-01 11 110582853 110582853 C G ARHGAP20 Missense_Mutation p.K34N 0.41 deleterious(0.01) benign(0.36) TCGA-FA-A82F-01 11 118372519 118372519 C T KMT2A Missense_Mutation p.P2151L 0.33 probably_damaging(0.999) TCGA-FA-A82F-01 11 121414264 121414264 A C SORL1 Missense_Mutation p.T565P 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-FA-A82F-01 11 123900714 123900714 C A OR10G8 Missense_Mutation p.L129I 0.26 deleterious(0) possibly_damaging(0.786) TCGA-FA-A82F-01 11 1268741 1268741 C T MUC5B Missense_Mutation p.T3544I 0.26 possibly_damaging(0.838) TCGA-FA-A82F-01 11 134188997 134188997 C T GLB1L3 3'UTR 0.35 TCGA-FA-A82F-01 11 1651379 1651379 G A KRTAP5-5 Silent p.G103G 0.28 TCGA-FA-A82F-01 11 4566782 4566782 C G OR52M1 Missense_Mutation p.A121G 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-FA-A82F-01 11 5372968 5372968 C A OR51B6 Silent p.P77P 0.43 TCGA-FA-A82F-01 11 56000281 56000281 C A OR5T2 Missense_Mutation p.K127N 0.33 tolerated(0.06) benign(0.013) TCGA-FA-A82F-01 11 63057478 63057478 C T SLC22A10 5'Flank 0.17 TCGA-FA-A82F-01 11 6561152 6561152 G A DNHD1 Missense_Mutation p.R1156Q 0.32 benign(0.008) TCGA-FA-A82F-01 11 70666719 70666719 G A SHANK2 Missense_Mutation p.R416W 0.38 deleterious(0) possibly_damaging(0.883) TCGA-FA-A82F-01 11 76508149 76508154 CTTTTC TTTTT TSKU 3'UTR 0.19 TCGA-FA-A82F-01 11 76508446 76508446 C G TSKU 3'UTR 0.25 TCGA-FA-A82F-01 11 76508486 76508486 C T TSKU 3'UTR 0.20 TCGA-FA-A82F-01 11 93819329 93819329 C G HEPHL1 Missense_Mutation p.T685R 0.09 deleterious(0.01) probably_damaging(0.98) TCGA-FA-A82F-01 12 104156152 104156152 G A STAB2 Missense_Mutation p.R2487Q 0.40 tolerated(0.21) benign(0.008) TCGA-FA-A82F-01 12 113495849 113495849 T A DTX1 5'UTR 0.47 TCGA-FA-A82F-01 12 113496147 113496147 C T DTX1 Silent p.N50N 0.12 TCGA-FA-A82F-01 12 131359242 131359242 G A RAN Silent p.A133A 0.23 TCGA-FA-A82F-01 12 1940311 1940311 G T LRTM2 Missense_Mutation p.S93I 0.06 tolerated(0.46) benign(0.031) TCGA-FA-A82F-01 12 41316167 41316167 T A CNTN1 Missense_Mutation p.Y113N 0.15 tolerated(0.25) benign(0.215) TCGA-FA-A82F-01 12 49426852 49426853 CT - KMT2D Frame_Shift_Del p.L3880Dfs*131 0.23 TCGA-FA-A82F-01 12 54367692 54367692 A T HOXC11 Nonsense_Mutation p.K223* 0.32 TCGA-FA-A82F-01 12 55759668 55759668 T G OR6C75 Missense_Mutation p.I258M 0.30 tolerated_low_confidence(0.22) probably_damaging(0.999) TCGA-FA-A82F-01 12 57181133 57181133 C T HSD17B6 3'UTR 0.34 TCGA-FA-A82F-01 12 62936884 62936884 C G MON2 Missense_Mutation p.S791C 0.34 deleterious(0.05) possibly_damaging(0.841) TCGA-FA-A82F-01 12 63328431 63328431 C T PPM1H Missense_Mutation p.S29N 0.34 tolerated(0.68) benign(0.006) TCGA-FA-A82F-01 12 91347268 91347268 C A CCER1 3'UTR 0.26 TCGA-FA-A82F-01 12 92539203 92539203 G A BTG1 Silent p.L37L 0.31 TCGA-FA-A82F-01 12 92539375 92539375 G A BTG1 5'UTR 0.37 TCGA-FA-A82F-01 12 92539379 92539379 C T BTG1 5'UTR 0.28 TCGA-FA-A82F-01 13 21562181 21562181 C T LATS2 Missense_Mutation p.V580I 0.25 deleterious(0.01) possibly_damaging(0.593) TCGA-FA-A82F-01 13 36744916 36744916 T G SOHLH2 Missense_Mutation p.S414R 0.31 deleterious(0.01) possibly_damaging(0.572) TCGA-FA-A82F-01 14 101004957 101004957 G A BEGAIN Silent p.A377A 0.08 TCGA-FA-A82F-01 14 101005056 101005056 C G BEGAIN Missense_Mutation p.E344D 0.06 tolerated(0.15) benign(0.147) TCGA-FA-A82F-01 14 102029141 102029141 C T DIO3 3'UTR 0.19 TCGA-FA-A82F-01 14 103570659 103570659 C T EXOC3L4 Missense_Mutation p.A406V 0.57 tolerated(0.16) benign(0.01) TCGA-FA-A82F-01 14 106054013 106054013 C T IGHA2 Missense_Mutation p.C169Y 0.43 deleterious(0.01) probably_damaging(0.958) TCGA-FA-A82F-01 14 106054721 106054721 G C IGHA2 Silent p.T4T 0.28 TCGA-FA-A82F-01 14 106331424 106331424 C G IGHJ2 Missense_Mutation p.V13L 0.12 benign(0.244) TCGA-FA-A82F-01 14 107218919 107218919 G A IGHV3-74 Silent p.S36S 0.13 TCGA-FA-A82F-01 14 107218928 107218928 A C IGHV3-74 Silent p.P33P 0.13 TCGA-FA-A82F-01 14 107218955 107218955 C A IGHV3-74 Silent p.V24V 0.16 TCGA-FA-A82F-01 14 107219123 107219123 A G IGHV3-74 Missense_Mutation p.F3L 0.16 tolerated_low_confidence(0.66) benign(0.003) TCGA-FA-A82F-01 14 35873697 35873697 T A NFKBIA Missense_Mutation p.I52F 0.35 deleterious(0.01) benign(0.002) TCGA-FA-A82F-01 14 86093128 86093128 T C FLRT2 3'UTR 0.28 TCGA-FA-A82F-01 14 91937274 91937274 G A SMEK1 Missense_Mutation p.H510Y 0.35 deleterious(0.01) possibly_damaging(0.888) TCGA-FA-A82F-01 15 40226356 40226356 C T EIF2AK4 5'UTR 0.35 TCGA-FA-A82F-01 15 75692433 75692433 T C SIN3A Missense_Mutation p.K601R 0.10 tolerated(0.57) benign(0.08) TCGA-FA-A82F-01 15 77363332 77363332 C T TSPAN3 5'UTR 0.11 TCGA-FA-A82F-01 16 4516347 4516347 G A NMRAL1 Silent p.S112S 0.47 TCGA-FA-A82F-01 16 55518022 55518022 T G MMP2 Missense_Mutation p.F159V 0.45 deleterious(0.01) possibly_damaging(0.761) TCGA-FA-A82F-01 16 75646759 75646759 C T ADAT1 Missense_Mutation p.C142Y 0.12 deleterious(0) probably_damaging(0.975) TCGA-FA-A82F-01 16 81208264 81208264 C T PKD1L2 Missense_Mutation p.V203M 0.13 deleterious_low_confidence(0) benign(0.007) TCGA-FA-A82F-01 16 84691156 84691156 G A KLHL36 Missense_Mutation p.R248H 0.10 tolerated(0.56) probably_damaging(0.937) TCGA-FA-A82F-01 16 89790056 89790056 C T ZNF276 Silent p.D315D 0.30 TCGA-FA-A82F-01 17 16351219 16351219 A C FAM211A Missense_Mutation p.L144R 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-FA-A82F-01 17 17398573 17398575 CGC - RASD1 In_Frame_Del p.G237del 0.12 TCGA-FA-A82F-01 17 32583751 32583751 A T CCL2 Missense_Mutation p.I69F 0.12 deleterious(0.01) benign(0.021) TCGA-FA-A82F-01 17 3599171 3599171 G T P2RX5 Nonsense_Mutation p.Y43* 0.55 TCGA-FA-A82F-01 17 3844337 3844342 GAAGCA TCCAC ATP2A3 Frame_Shift_Del p.C675Vfs*26 0.62 TCGA-FA-A82F-01 17 38548949 38548949 T C TOP2A Silent p.P1284P 0.44 TCGA-FA-A82F-01 17 48431146 48431146 G A XYLT2 Silent p.R97R 0.39 TCGA-FA-A82F-01 17 58503193 58503193 G T C17orf64 Missense_Mutation p.R34I 0.14 tolerated(0.07) possibly_damaging(0.609) TCGA-FA-A82F-01 17 61573800 61573800 G A ACE Silent p.L1142L 0.39 TCGA-FA-A82F-01 17 68173038 68173038 T - KCNJ2 3'UTR 0.14 TCGA-FA-A82F-01 17 74714827 74714827 C T JMJD6 Missense_Mutation p.R399H 0.42 tolerated_low_confidence(0.05) possibly_damaging(0.747) TCGA-FA-A82F-01 17 74922752 74922752 G A MGAT5B Missense_Mutation p.G422S 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-FA-A82F-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.51 deleterious(0) probably_damaging(0.998) TCGA-FA-A82F-01 17 78185815 78185815 C A SGSH Intron 0.33 TCGA-FA-A82F-01 17 9804381 9804381 G T RCVRN Missense_Mutation p.L140I 0.46 deleterious(0.02) benign(0.03) TCGA-FA-A82F-01 18 15316576 15316576 G T RNU6-721P 3'Flank 0.09 TCGA-FA-A82F-01 18 30350108 30350108 C T KLHL14 Silent p.L149L 0.51 TCGA-FA-A82F-01 18 31250736 31250736 C A ASXL3 Missense_Mutation p.Q193K 0.19 probably_damaging(0.991) TCGA-FA-A82F-01 18 56246643 56246643 G T ALPK2 Silent p.P455P 0.23 TCGA-FA-A82F-01 18 6876153 6876153 A C ARHGAP28 Silent p.S253S 0.13 TCGA-FA-A82F-01 18 7049096 7049096 T C LAMA1 Missense_Mutation p.D250G 0.47 deleterious(0) probably_damaging(1) TCGA-FA-A82F-01 18 72998479 72998479 G C TSHZ1 Missense_Mutation p.E328Q 0.11 tolerated(0.54) benign(0.147) TCGA-FA-A82F-01 18 74606988 74606988 C T ZNF236 Silent p.N477N 0.43 TCGA-FA-A82F-01 19 16319908 16319908 G A AP1M1 Missense_Mutation p.A156T 0.27 deleterious(0.04) probably_damaging(1) TCGA-FA-A82F-01 19 33465059 33465059 G A C19orf40 Missense_Mutation p.G113R 0.15 deleterious(0) probably_damaging(0.988) TCGA-FA-A82F-01 19 39884260 39884260 C T MED29 Nonsense_Mutation p.Q136* 0.20 TCGA-FA-A82F-01 19 42603967 42603967 G A POU2F2 Nonsense_Mutation p.Q104* 0.34 TCGA-FA-A82F-01 19 49557764 49557764 G A CGB7 Silent p.R94R 0.24 TCGA-FA-A82F-01 19 53418501 53418501 C T ZNF888 RNA 0.13 TCGA-FA-A82F-01 19 8959697 8959697 G A MUC16 Missense_Mutation p.R14479C 0.25 benign(0.076) TCGA-FA-A82F-01 1 113162439 113162439 T G CAPZA1 5'UTR 0.29 TCGA-FA-A82F-01 1 144852401 144852401 G A PDE4DIP Nonsense_Mutation p.Q2348* 0.10 TCGA-FA-A82F-01 1 160146308 160146308 G A ATP1A4 Missense_Mutation p.D836N 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-FA-A82F-01 1 190423955 190423955 T C BRINP3 Silent p.A22A 0.31 TCGA-FA-A82F-01 1 203013104 203013104 T C PPFIA4 Missense_Mutation p.S128P 0.37 deleterious(0) probably_damaging(0.999) TCGA-FA-A82F-01 1 203274810 203274810 A C BTG2 Missense_Mutation p.T26P 0.27 tolerated(0.24) benign(0.289) TCGA-FA-A82F-01 1 203274836 203274836 G C BTG2 Missense_Mutation p.R34S 0.24 deleterious(0.05) benign(0.326) TCGA-FA-A82F-01 1 203276238 203276241 ACAA GC BTG2 Frame_Shift_Del p.Y50Cfs*58 0.26 TCGA-FA-A82F-01 1 212558714 212558714 C T TMEM206 Missense_Mutation p.E194K 0.31 deleterious(0.04) benign(0.029) TCGA-FA-A82F-01 1 216680465 216680465 G T ESRRG Missense_Mutation p.A410E 0.30 deleterious(0) probably_damaging(1) TCGA-FA-A82F-01 1 22181135 22181135 C G HSPG2 Missense_Mutation p.R2086T 0.39 possibly_damaging(0.477) TCGA-FA-A82F-01 1 22181246 22181246 C T HSPG2 Missense_Mutation p.S2049N 0.40 benign(0.002) TCGA-FA-A82F-01 1 226016540 226016540 G T EPHX1 Missense_Mutation p.G37V 0.26 deleterious(0) probably_damaging(0.978) TCGA-FA-A82F-01 1 228594049 228594049 C T TRIM11 Missense_Mutation p.A72T 0.35 tolerated(1) benign(0.02) TCGA-FA-A82F-01 1 236156994 236156994 G A NID1 Silent p.D902D 0.38 TCGA-FA-A82F-01 1 35885121 35885121 G A ZMYM4 Missense_Mutation p.R1497H 0.32 deleterious(0) probably_damaging(0.994) TCGA-FA-A82F-01 1 46088711 46088711 C T CCDC17 Missense_Mutation p.R191Q 0.22 tolerated(0.18) benign(0.282) TCGA-FA-A82F-01 1 8927286 8927286 G C ENO1 Missense_Mutation p.L112V 0.16 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-FA-A82F-01 20 25462663 25462663 T A NINL Missense_Mutation p.H584L 0.33 tolerated(0.11) benign(0.127) TCGA-FA-A82F-01 20 3891366 3891367 - A PANK2 Frame_Shift_Ins p.P376Tfs*3 0.27 TCGA-FA-A82F-01 20 60427861 60427861 G A CDH4 Missense_Mutation p.D262N 0.33 deleterious(0) possibly_damaging(0.83) TCGA-FA-A82F-01 20 61386045 61386045 C T NTSR1 Silent p.T241T 0.11 TCGA-FA-A82F-01 20 8678335 8678335 C T PLCB1 Missense_Mutation p.R358C 0.39 deleterious(0) probably_damaging(1) TCGA-FA-A82F-01 21 33371069 33371069 G A HUNK Missense_Mutation p.V573M 0.37 tolerated_low_confidence(0.13) benign(0.044) TCGA-FA-A82F-01 21 43254614 43254614 C G PRDM15 Intron 0.47 TCGA-FA-A82F-01 21 43256302 43256302 T C PRDM15 Missense_Mutation p.K766E 0.36 tolerated(0.09) probably_damaging(0.992) TCGA-FA-A82F-01 22 23223379 23223379 A T IGLV3-1 Missense_Mutation p.Y50F 0.38 tolerated(0.16) benign(0.044) TCGA-FA-A82F-01 22 23223498 23223498 A G IGLV3-1 Missense_Mutation p.T90A 0.30 deleterious(0.03) possibly_damaging(0.533) TCGA-FA-A82F-01 22 23223501 23223501 C G IGLV3-1 Missense_Mutation p.L91V 0.27 deleterious(0) probably_damaging(0.988) TCGA-FA-A82F-01 22 23230116 23230116 A G IGLL5 5'UTR 0.26 TCGA-FA-A82F-01 22 23230295 23230295 G C IGLL5 Missense_Mutation p.R21T 0.27 deleterious_low_confidence(0.04) benign(0.228) TCGA-FA-A82F-01 22 23230296 23230296 G A IGLL5 Silent p.R21R 0.28 TCGA-FA-A82F-01 22 23230348 23230348 C T IGLL5 Silent p.L39L 0.33 TCGA-FA-A82F-01 22 23230400 23230400 T C IGLL5 Missense_Mutation p.V56A 0.28 tolerated_low_confidence(1) benign(0) TCGA-FA-A82F-01 22 36122574 36122574 C T APOL5 Silent p.I153I 0.24 TCGA-FA-A82F-01 22 43870785 43870785 C A MPPED1 Silent p.I192I 0.29 TCGA-FA-A82F-01 22 50521550 50521550 G A MLC1 Missense_Mutation p.P77L 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FA-A82F-01 2 100916227 100916227 C T LONRF2 Missense_Mutation p.V407M 0.32 tolerated(0.11) benign(0) TCGA-FA-A82F-01 2 141571231 141571231 A G LRP1B Missense_Mutation p.I1785T 0.12 benign(0.152) TCGA-FA-A82F-01 2 167151106 167151106 T A SCN9A Intron 0.33 TCGA-FA-A82F-01 2 182346352 182346352 G A ITGA4 Missense_Mutation p.R261Q 0.39 tolerated(0.32) benign(0.006) TCGA-FA-A82F-01 2 193059099 193059099 G A TMEFF2 Missense_Mutation p.P51L 0.27 tolerated(0.07) possibly_damaging(0.642) TCGA-FA-A82F-01 2 219538411 219538411 C T STK36 Nonsense_Mutation p.R50* 0.42 TCGA-FA-A82F-01 2 220283213 220283213 G A DES Missense_Mutation p.R10H 0.20 tolerated(0.06) unknown(0) TCGA-FA-A82F-01 2 222436985 222436985 C T EPHA4 5'UTR 0.33 TCGA-FA-A82F-01 2 235951281 235951281 G A SH3BP4 Missense_Mutation p.R623K 0.39 tolerated(0.26) possibly_damaging(0.898) TCGA-FA-A82F-01 2 239757191 239757191 G A TWIST2 Missense_Mutation p.R112K 0.28 deleterious(0.04) possibly_damaging(0.678) TCGA-FA-A82F-01 2 242694496 242694496 C T D2HGDH Intron 0.38 TCGA-FA-A82F-01 2 27503096 27503096 G T DNAJC5G 3'UTR 0.27 TCGA-FA-A82F-01 2 38297775 38297775 G C CYP1B1 3'UTR 0.22 TCGA-FA-A82F-01 2 69565092 69565092 G A GFPT1 Missense_Mutation p.R474W 0.32 deleterious(0) possibly_damaging(0.639) TCGA-FA-A82F-01 2 80529497 80529497 A G LRRTM1 Missense_Mutation p.M483T 0.21 tolerated(0.25) benign(0.001) TCGA-FA-A82F-01 2 97361235 97361235 T C FER1L5 RNA 0.26 TCGA-FA-A82F-01 3 105452850 105452850 T G CBLB Intron 0.45 TCGA-FA-A82F-01 3 11302022 11302022 C A HRH1 Silent p.I433I 0.28 TCGA-FA-A82F-01 3 115805359 115805359 C T LSAMP Missense_Mutation p.R67H 0.39 deleterious(0) probably_damaging(0.993) TCGA-FA-A82F-01 3 16306202 16306202 C T DPH3 Intron 0.33 TCGA-FA-A82F-01 3 180327261 180327261 T A TTC14 Intron 0.33 TCGA-FA-A82F-01 3 191092884 191092884 G T CCDC50 Missense_Mutation p.G161V 0.29 tolerated(0.18) probably_damaging(0.993) TCGA-FA-A82F-01 3 197409444 197409444 C T KIAA0226 Missense_Mutation p.G675R 0.28 deleterious(0.03) benign(0.429) TCGA-FA-A82F-01 3 50365502 50365502 C T TUSC2 Missense_Mutation p.G10D 0.50 tolerated(0.06) possibly_damaging(0.724) TCGA-FA-A82F-01 3 53221396 53221396 C T PRKCD Missense_Mutation p.H465Y 0.37 deleterious(0) probably_damaging(1) TCGA-FA-A82F-01 3 62278866 62278866 C T PTPRG Missense_Mutation p.L1408F 0.25 deleterious(0) probably_damaging(1) TCGA-FA-A82F-01 3 64148736 64148736 G A PRICKLE2 Nonsense_Mutation p.R72* 0.34 TCGA-FA-A82F-01 3 68055837 68055837 G T FAM19A1 Missense_Mutation p.C23F 0.32 tolerated(0.27) benign(0.086) TCGA-FA-A82F-01 3 69988253 69988253 T G MITF Missense_Mutation p.F196C 0.26 tolerated(0.19) possibly_damaging(0.879) TCGA-FA-A82F-01 3 73433731 73433731 G A PDZRN3 Silent p.Y662Y 0.38 TCGA-FA-A82F-01 3 78711223 78711223 G T ROBO1 Missense_Mutation p.Q670K 0.16 deleterious(0) possibly_damaging(0.824) TCGA-FA-A82F-01 4 106155165 106155165 T G TET2 Silent p.P22P 0.24 TCGA-FA-A82F-01 4 125631534 125631534 T G ANKRD50 Missense_Mutation p.N45H 0.33 tolerated_low_confidence(0.31) benign(0) TCGA-FA-A82F-01 4 126328261 126328261 T C FAT4 Missense_Mutation p.V1845A 0.25 benign(0.013) TCGA-FA-A82F-01 4 143129658 143129658 C T INPP4B Missense_Mutation p.S331N 0.13 tolerated(0.2) benign(0.019) TCGA-FA-A82F-01 4 143235864 143235864 C T INPP4B Splice_Site p.X141_splice 0.37 TCGA-FA-A82F-01 4 151504768 151504768 G A MAB21L2 Missense_Mutation p.G196D 0.30 tolerated(0.27) benign(0.044) TCGA-FA-A82F-01 4 188924997 188924997 C T ZFP42 3'UTR 0.23 TCGA-FA-A82F-01 4 25769176 25769176 G A SEL1L3 Missense_Mutation p.S939F 0.27 deleterious(0) probably_damaging(0.999) TCGA-FA-A82F-01 4 36069898 36069898 A G ARAP2 Silent p.S1582S 0.15 TCGA-FA-A82F-01 4 72338528 72338528 C T SLC4A4 Missense_Mutation p.R582C 0.27 deleterious(0) probably_damaging(1) TCGA-FA-A82F-01 4 74005713 74005713 G A ANKRD17 Nonsense_Mutation p.R874* 0.29 TCGA-FA-A82F-01 4 7776754 7776754 G A AFAP1 Intron 0.36 TCGA-FA-A82F-01 4 83294683 83294683 C T HNRNPD Missense_Mutation p.G50E 0.28 tolerated_low_confidence(0.37) benign(0) TCGA-FA-A82F-01 4 90856769 90856769 G C MMRN1 Missense_Mutation p.M646I 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-FA-A82F-01 5 140167650 140167650 C T PCDHA1 Missense_Mutation p.A592V 0.34 deleterious_low_confidence(0.03) benign(0.396) TCGA-FA-A82F-01 5 140222523 140222523 C T PCDHA8 Silent p.D539D 0.36 TCGA-FA-A82F-01 5 177565199 177565199 C T RMND5B Missense_Mutation p.R27W 0.31 deleterious(0.01) benign(0.339) TCGA-FA-A82F-01 5 2747607 2747607 T G IRX2 Intron 0.25 TCGA-FA-A82F-01 5 37169527 37169527 A G C5orf42 Missense_Mutation p.L2200S 0.20 deleterious(0) probably_damaging(0.994) TCGA-FA-A82F-01 5 38884164 38884164 T G OSMR Missense_Mutation p.S218R 0.08 tolerated(0.54) benign(0.05) TCGA-FA-A82F-01 5 72173116 72173116 G A TNPO1 Nonsense_Mutation p.W288* 0.31 TCGA-FA-A82F-01 6 122741330 122741330 A C HSF2 Missense_Mutation p.H215P 0.57 tolerated(0.25) benign(0.081) TCGA-FA-A82F-01 6 151161171 151161171 C G PLEKHG1 Silent p.L1099L 0.16 TCGA-FA-A82F-01 6 168440827 168440827 G A KIF25 Missense_Mutation p.A193T 0.30 tolerated(0.07) possibly_damaging(0.903) TCGA-FA-A82F-01 6 26056479 26056479 C G HIST1H1C Missense_Mutation p.A60P 0.36 tolerated(0.07) possibly_damaging(0.838) TCGA-FA-A82F-01 6 26124871 26124871 C T HIST1H2AC Intron 0.33 TCGA-FA-A82F-01 6 26216444 26216444 G C HIST1H2BG 3'UTR 0.44 TCGA-FA-A82F-01 6 27861456 27861456 G A HIST1H2BO Silent p.E72E 0.27 TCGA-FA-A82F-01 6 30553422 30553422 C T ABCF1 Silent p.L521L 0.35 TCGA-FA-A82F-01 6 31324464 31324464 C T HLA-B Splice_Site p.X115_splice 0.16 TCGA-FA-A82F-01 6 35420491 35420491 C G FANCE Missense_Mutation p.P57A 0.21 tolerated(0.5) possibly_damaging(0.485) TCGA-FA-A82F-01 6 37138423 37138423 G A PIM1 Silent p.K24K 0.28 TCGA-FA-A82F-01 6 37138804 37138804 G T PIM1 Missense_Mutation p.E79D 0.25 tolerated(0.19) benign(0.004) TCGA-FA-A82F-01 6 37138937 37138937 C T PIM1 Silent p.L93L 0.20 TCGA-FA-A82F-01 6 37138950 37138950 G C PIM1 Missense_Mutation p.S97T 0.07 tolerated(0.18) benign(0.275) TCGA-FA-A82F-01 6 37139087 37139087 C G PIM1 Missense_Mutation p.L143V 0.37 tolerated(0.5) benign(0.138) TCGA-FA-A82F-01 6 39563864 39563864 T G KIF6 Missense_Mutation p.K271T 0.35 tolerated(0.06) probably_damaging(0.951) TCGA-FA-A82F-01 6 47791945 47791945 G T OPN5 3'UTR 0.27 TCGA-FA-A82F-01 6 76713610 76713610 G T IMPG1 Missense_Mutation p.S398Y 0.25 tolerated(0.29) benign(0.231) TCGA-FA-A82F-01 7 100420197 100420197 C T EPHB4 Silent p.P168P 0.21 TCGA-FA-A82F-01 7 107408040 107408040 C T SLC26A3 Missense_Mutation p.R752H 0.25 deleterious_low_confidence(0.01) benign(0.04) TCGA-FA-A82F-01 7 11418733 11418733 G A THSD7A Missense_Mutation p.R1589W 0.38 deleterious(0.05) benign(0.004) TCGA-FA-A82F-01 7 150720997 150720997 G T ATG9B Missense_Mutation p.Q172K 0.18 tolerated(0.08) benign(0.375) TCGA-FA-A82F-01 7 151927093 151927093 C T KMT2C Missense_Mutation p.G964D 0.02 probably_damaging(0.996) TCGA-FA-A82F-01 7 21847663 21847663 A T DNAH11 Missense_Mutation p.Q3450L 0.32 benign(0.039) TCGA-FA-A82F-01 7 47694914 47694914 G A C7orf65 Missense_Mutation p.R13Q 0.10 tolerated_low_confidence(0.12) benign(0) TCGA-FA-A82F-01 7 72743416 72743416 T G FKBP6 Missense_Mutation p.F77V 0.33 tolerated(0.3) benign(0.016) TCGA-FA-A82F-01 7 82583245 82583245 G T PCLO Missense_Mutation p.H2342N 0.11 unknown(0) TCGA-FA-A82F-01 7 84685039 84685039 A G SEMA3D Silent p.V285V 0.37 TCGA-FA-A82F-01 7 90377080 90377080 G C CDK14 Missense_Mutation p.G134R 0.22 deleterious(0) probably_damaging(0.998) TCGA-FA-A82F-01 8 109215229 109215229 G A EIF3E Nonsense_Mutation p.Q428* 0.36 TCGA-FA-A82F-01 8 141468446 141468448 GAA - TRAPPC9 In_Frame_Del p.S73del 0.27 TCGA-FA-A82F-01 8 17611707 17611707 G T MTUS1 Missense_Mutation p.T537N 0.30 deleterious(0.01) benign(0.013) TCGA-FA-A82F-01 8 3351201 3351201 G T CSMD1 Missense_Mutation p.D464E 0.11 probably_damaging(0.968) TCGA-FA-A82F-01 8 35624423 35624423 G A UNC5D Missense_Mutation p.V773I 0.23 tolerated(1) benign(0.164) TCGA-FA-A82F-01 8 37729420 37729420 G A RAB11FIP1 Missense_Mutation p.S967L 0.06 deleterious(0) probably_damaging(0.995) TCGA-FA-A82F-01 8 39872937 39872937 A T IDO2 Missense_Mutation p.H360L 0.34 deleterious(0) probably_damaging(1) TCGA-FA-A82F-01 8 76463645 76463645 A C HNF4G Missense_Mutation p.R125S 0.20 deleterious(0.01) benign(0.391) TCGA-FA-A82F-01 8 9567708 9567708 T G TNKS Missense_Mutation p.V576G 0.23 deleterious(0.04) probably_damaging(0.992) TCGA-FA-A82F-01 8 99837868 99837868 G A STK3 Intron 0.33 TCGA-FA-A82F-01 9 120053673 120053673 C T ASTN2 Missense_Mutation p.A188T 0.29 tolerated_low_confidence(0.37) possibly_damaging(0.695) TCGA-FA-A82F-01 9 120475088 120475088 C A TLR4 Missense_Mutation p.L228I 0.13 deleterious(0) probably_damaging(0.999) TCGA-FA-A82F-01 9 13222318 13222318 C A MPDZ Missense_Mutation p.A221S 0.31 tolerated(0.09) probably_damaging(0.999) TCGA-FA-A82F-01 9 132631704 132631704 G A USP20 Silent p.R464R 0.11 TCGA-FA-A82F-01 9 136310909 136310909 G A ADAMTS13 Silent p.A900A 0.11 TCGA-FA-A82F-01 9 138903497 138903497 G A NACC2 Silent p.A543A 0.34 TCGA-FA-A82F-01 9 139566493 139566493 A C EGFL7 Missense_Mutation p.D251A 0.27 deleterious(0) probably_damaging(1) TCGA-FA-A82F-01 9 35720844 35720844 G A TLN1 Missense_Mutation p.L391F 0.16 deleterious(0) possibly_damaging(0.865) TCGA-FA-A82F-01 9 37424891 37424891 C G GRHPR Missense_Mutation p.L45V 0.21 deleterious(0) probably_damaging(0.979) TCGA-FA-A82F-01 9 85597645 85597645 T A RASEF Missense_Mutation p.T724S 0.25 tolerated(1) benign(0.001) TCGA-FA-A82F-01 9 90502053 90502053 G T SPATA31E1 Missense_Mutation p.R884L 0.28 tolerated(0.18) benign(0.003) TCGA-FA-A82F-01 X 112065819 112065819 A G AMOT Missense_Mutation p.M179T 0.47 unknown(0) TCGA-FA-A82F-01 X 153039097 153039097 C A PLXNB3 Missense_Mutation p.P1093T 0.64 tolerated(0.32) benign(0.34) TCGA-FA-A82F-01 X 2873470 2873470 G A ARSE Silent p.Y98Y 0.45 TCGA-FA-A82F-01 X 44942730 44942730 A C KDM6A Missense_Mutation p.T1104P 0.57 deleterious(0.01) benign(0.027) TCGA-FA-A86F-01 10 102896618 102896618 A G TLX1 Missense_Mutation p.D314G 0.14 deleterious(0) benign(0.277) TCGA-FA-A86F-01 10 105883796 105883796 G A SFR1 Missense_Mutation p.A154T 0.11 deleterious(0.04) benign(0.005) TCGA-FA-A86F-01 10 106959775 106959775 C T SORCS3 Silent p.S676S 0.10 TCGA-FA-A86F-01 10 112636429 112636429 G T PDCD4 Intron 0.14 TCGA-FA-A86F-01 10 37508026 37508026 A T ANKRD30A Missense_Mutation p.E1073V 0.08 deleterious(0) possibly_damaging(0.788) TCGA-FA-A86F-01 10 55626476 55626476 T G PCDH15 Silent p.R1215R 0.04 TCGA-FA-A86F-01 10 60549152 60549152 G A BICC1 Missense_Mutation p.R244H 0.06 deleterious(0.03) possibly_damaging(0.836) TCGA-FA-A86F-01 10 67829199 67829199 G T CTNNA3 Missense_Mutation p.Q676K 0.11 deleterious(0.03) unknown(0) TCGA-FA-A86F-01 11 108044437 108044437 T A NPAT Missense_Mutation p.K425I 0.08 deleterious(0.02) probably_damaging(0.991) TCGA-FA-A86F-01 11 115109234 115109234 G T CADM1 Missense_Mutation p.T137N 0.06 tolerated(0.27) benign(0.239) TCGA-FA-A86F-01 11 46419037 46419037 T C AMBRA1 Missense_Mutation p.D1197G 0.11 tolerated_low_confidence(0.09) benign(0.002) TCGA-FA-A86F-01 11 48328231 48328231 C T OR4S1 Missense_Mutation p.H153Y 0.09 deleterious(0) probably_damaging(0.996) TCGA-FA-A86F-01 11 58978211 58978211 C G MPEG1 Missense_Mutation p.E710Q 0.03 tolerated_low_confidence(0.16) benign(0.002) TCGA-FA-A86F-01 11 58978519 58978519 G A MPEG1 Missense_Mutation p.T607I 0.12 tolerated(0.11) benign(0.064) TCGA-FA-A86F-01 11 58978737 58978745 GCAGCTAAA - MPEG1 In_Frame_Del p.F532_C534del 0.12 TCGA-FA-A86F-01 11 58979509 58979509 C T MPEG1 Missense_Mutation p.S277N 0.09 deleterious(0) probably_damaging(0.997) TCGA-FA-A86F-01 11 58979544 58979544 G A MPEG1 Silent p.S265S 0.09 TCGA-FA-A86F-01 11 94823021 94823021 C T ENDOD1 5'UTR 0.17 TCGA-FA-A86F-01 12 112516526 112516526 T C NAA25 Missense_Mutation p.E166G 0.06 deleterious(0.01) benign(0.193) TCGA-FA-A86F-01 12 18491371 18491371 T C PIK3C2G Silent p.Y428Y 0.05 TCGA-FA-A86F-01 12 25357062 25357062 A C LYRM5 Missense_Mutation p.D30A 0.13 tolerated(0.26) benign(0.005) TCGA-FA-A86F-01 12 49426688 49426688 G A KMT2D Nonsense_Mutation p.Q3934* 0.13 TCGA-FA-A86F-01 12 49436376 49436377 - G KMT2D Frame_Shift_Ins p.G1946Rfs*11 0.10 TCGA-FA-A86F-01 12 81046571 81046571 C G PTPRQ Missense_Mutation p.P2021A 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-FA-A86F-01 12 81741431 81741431 T C PPFIA2 Missense_Mutation p.T705A 0.04 deleterious(0.01) benign(0.012) TCGA-FA-A86F-01 12 92539203 92539203 G A BTG1 Silent p.L37L 0.04 TCGA-FA-A86F-01 13 113773002 113773002 A G F7 Missense_Mutation p.N361D 0.21 tolerated(0.49) benign(0.003) TCGA-FA-A86F-01 13 35729913 35729913 C A NBEA Silent p.I816I 0.14 TCGA-FA-A86F-01 13 37453460 37453460 C T SMAD9 Missense_Mutation p.E123K 0.10 deleterious(0.01) possibly_damaging(0.861) TCGA-FA-A86F-01 13 58209024 58209024 G A PCDH17 Missense_Mutation p.V782I 0.12 tolerated(0.11) benign(0.018) TCGA-FA-A86F-01 14 106829813 106829813 G C IGHV4-34 Silent p.V50V 0.10 TCGA-FA-A86F-01 14 106829986 106829986 A G IGHV4-34 Silent p.A20A 0.11 TCGA-FA-A86F-01 14 34270175 34270175 G A NPAS3 Missense_Mutation p.A888T 0.12 tolerated_low_confidence(0.14) benign(0.132) TCGA-FA-A86F-01 14 91942154 91942154 C T SMEK1 Intron 0.15 TCGA-FA-A86F-01 15 30114248 30114248 G A TJP1 5'UTR 0.31 TCGA-FA-A86F-01 15 79221796 79221797 - T CTSH Frame_Shift_Ins p.N196Kfs*7 0.10 TCGA-FA-A86F-01 16 11012368 11012368 C A CIITA Missense_Mutation p.S1045Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-FA-A86F-01 16 19126812 19126812 G A ITPRIPL2 Silent p.A343A 0.08 TCGA-FA-A86F-01 16 22291585 22291585 G C EEF2K Missense_Mutation p.E652D 0.10 tolerated(0.2) benign(0.383) TCGA-FA-A86F-01 16 2283157 2283157 C A E4F1 Silent p.S343S 0.08 TCGA-FA-A86F-01 16 30455660 30455660 G C SEPHS2 3'Flank 0.07 TCGA-FA-A86F-01 16 31159976 31159976 G A PRSS36 Missense_Mutation p.A98V 0.05 tolerated(0.08) benign(0.312) TCGA-FA-A86F-01 16 31734583 31734583 C T ZNF720 Silent p.L45L 0.18 TCGA-FA-A86F-01 16 57601791 57601791 G A GPR114 Missense_Mutation p.R282H 0.16 tolerated(0.16) benign(0.036) TCGA-FA-A86F-01 16 64981740 64981740 G T CDH11 Missense_Mutation p.D719E 0.10 tolerated(0.73) probably_damaging(0.998) TCGA-FA-A86F-01 16 68597689 68597689 T C ZFP90 Silent p.T333T 0.06 TCGA-FA-A86F-01 16 68716273 68716273 C T CDH3 Silent p.D355D 0.13 TCGA-FA-A86F-01 16 81187674 81187674 A C PKD1L2 RNA 0.05 TCGA-FA-A86F-01 16 87748161 87748161 C T KLHDC4 Missense_Mutation p.D260N 0.06 deleterious(0) probably_damaging(0.992) TCGA-FA-A86F-01 17 15619640 15619640 A C ZNF286A Missense_Mutation p.K201T 0.04 tolerated(0.46) benign(0.343) TCGA-FA-A86F-01 17 42030694 42030694 C T PYY Missense_Mutation p.R53H 0.07 deleterious(0) probably_damaging(0.995) TCGA-FA-A86F-01 17 42289093 42289093 C T UBTF Missense_Mutation p.A310T 0.17 tolerated(0.14) probably_damaging(1) TCGA-FA-A86F-01 17 48051195 48051195 T C DLX4 Missense_Mutation p.L204P 0.14 deleterious(0.01) benign(0.002) TCGA-FA-A86F-01 17 73498386 73498386 A G CASKIN2 Silent p.A923A 0.07 TCGA-FA-A86F-01 17 80477989 80477989 C A FOXK2 Silent p.I75I 0.10 TCGA-FA-A86F-01 18 3089200 3089200 C A MYOM1 Missense_Mutation p.G1370V 0.16 tolerated(0.15) benign(0.093) TCGA-FA-A86F-01 18 34740191 34740191 C G KIAA1328 Missense_Mutation p.L421V 0.04 tolerated(0.28) benign(0.167) TCGA-FA-A86F-01 18 70534552 70534552 G A NETO1 5'UTR 0.05 TCGA-FA-A86F-01 19 11569017 11569017 G A ELAVL3 Missense_Mutation p.P191L 0.05 tolerated(0.06) benign(0.318) TCGA-FA-A86F-01 19 16437908 16437908 C T KLF2 3'UTR 0.11 TCGA-FA-A86F-01 19 31768074 31768074 G A TSHZ3 Silent p.D875D 0.21 TCGA-FA-A86F-01 19 44278489 44278489 G C KCNN4 Missense_Mutation p.R180G 0.12 deleterious(0) probably_damaging(0.999) TCGA-FA-A86F-01 19 48783003 48783003 C T ZNF114 5'UTR 0.09 TCGA-FA-A86F-01 19 52877609 52877609 G A ZNF880 Missense_Mutation p.R66Q 0.10 tolerated(0.32) benign(0) TCGA-FA-A86F-01 19 54632434 54632434 C A PRPF31 Silent p.I383I 0.15 TCGA-FA-A86F-01 19 57988770 57988770 C T ZNF772 5'UTR 0.10 TCGA-FA-A86F-01 19 804886 804886 T C PTBP1 Missense_Mutation p.F222L 0.05 tolerated(0.05) possibly_damaging(0.876) TCGA-FA-A86F-01 1 10699179 10699179 G C CASZ1 Missense_Mutation p.D1700E 0.15 tolerated_low_confidence(0.39) unknown(0) TCGA-FA-A86F-01 1 10699182 10699182 C G CASZ1 Missense_Mutation p.E1699D 0.15 tolerated_low_confidence(0.46) unknown(0) TCGA-FA-A86F-01 1 1288703 1288703 C T MXRA8 3'UTR 0.04 TCGA-FA-A86F-01 1 149857825 149857825 G A HIST2H2BE Silent p.Y122Y 0.05 TCGA-FA-A86F-01 1 158259713 158259713 A C CD1C 5'UTR 0.39 TCGA-FA-A86F-01 1 160850422 160850422 C T ITLN1 Missense_Mutation p.G214D 0.24 deleterious(0) probably_damaging(1) TCGA-FA-A86F-01 1 161228729 161228729 C T PCP4L1 5'UTR 0.27 TCGA-FA-A86F-01 1 16255388 16255388 G T SPEN Nonsense_Mutation p.E885* 0.10 TCGA-FA-A86F-01 1 165667577 165667577 C A ALDH9A1 Intron 0.06 TCGA-FA-A86F-01 1 17566209 17566209 C G PADI1 Missense_Mutation p.H521Q 0.10 tolerated(0.53) benign(0.309) TCGA-FA-A86F-01 1 215751396 215751396 C T KCTD3 Silent p.V123V 0.13 TCGA-FA-A86F-01 1 247492064 247492064 G A ZNF496 Silent p.N165N 0.05 TCGA-FA-A86F-01 1 27101417 27101417 C - ARID1A Frame_Shift_Del p.P1568Lfs*44 0.21 TCGA-FA-A86F-01 1 27121137 27121137 C T PIGV Silent p.S204S 0.04 TCGA-FA-A86F-01 1 38355355 38355355 G A INPP5B Missense_Mutation p.S224F 0.05 deleterious(0) probably_damaging(0.972) TCGA-FA-A86F-01 1 39879764 39879764 C T KIAA0754 Missense_Mutation p.T1140I 0.06 possibly_damaging(0.702) TCGA-FA-A86F-01 1 48688529 48688529 G C SLC5A9 Missense_Mutation p.V41L 0.06 tolerated(0.41) benign(0.006) TCGA-FA-A86F-01 20 2641477 2641477 T C IDH3B Splice_Site p.X133_splice 0.11 TCGA-FA-A86F-01 20 32267687 32267690 CCGT - E2F1 Frame_Shift_Del p.D148Vfs*5 0.12 TCGA-FA-A86F-01 20 32996580 32996580 G A ITCH Nonsense_Mutation p.W65* 0.10 TCGA-FA-A86F-01 20 47782554 47782554 G A STAU1 Missense_Mutation p.T62I 0.06 tolerated(0.17) benign(0.002) TCGA-FA-A86F-01 20 54573515 54573515 C A CBLN4 3'UTR 0.12 TCGA-FA-A86F-01 21 10959781 10959781 T G TPTE Missense_Mutation p.K65Q 0.03 tolerated(0.13) benign(0.441) TCGA-FA-A86F-01 22 23230188 23230188 C T IGLL5 5'UTR 0.13 TCGA-FA-A86F-01 22 23230409 23230409 G A IGLL5 Missense_Mutation p.S59N 0.12 deleterious_low_confidence(0.02) benign(0.002) TCGA-FA-A86F-01 22 26709797 26709797 C T SEZ6L Silent p.Y648Y 0.14 TCGA-FA-A86F-01 22 51169276 51169276 C A SHANK3 Missense_Mutation p.P1594T 0.21 benign(0.177) TCGA-FA-A86F-01 2 103010956 103010956 C G IL18R1 Missense_Mutation p.S380C 0.03 deleterious(0) probably_damaging(0.999) TCGA-FA-A86F-01 2 141777616 141777616 C G LRP1B Missense_Mutation p.W615C 0.09 probably_damaging(0.926) TCGA-FA-A86F-01 2 15427218 15427218 T C NBAS Missense_Mutation p.E1706G 0.08 deleterious(0) possibly_damaging(0.543) TCGA-FA-A86F-01 2 165947787 165947787 C A SCN3A Missense_Mutation p.A1626S 0.08 deleterious(0) possibly_damaging(0.889) TCGA-FA-A86F-01 2 167055184 167055185 - T SCN9A Frame_Shift_Ins p.*1978Ifs*6 0.09 TCGA-FA-A86F-01 2 23785074 23785074 G A KLHL29 Missense_Mutation p.R3Q 0.09 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FA-A86F-01 2 241401695 241401695 C T GPC1 Missense_Mutation p.A138V 0.11 tolerated(0.22) benign(0.013) TCGA-FA-A86F-01 2 43019724 43019724 G A HAAO 5'UTR 0.17 TCGA-FA-A86F-01 2 54483408 54483408 T C TSPYL6 5'UTR 0.04 TCGA-FA-A86F-01 2 89160431 89160431 T G IGKJ4 Missense_Mutation p.T2P 0.16 probably_damaging(0.93) TCGA-FA-A86F-01 2 89185522 89185522 G A IGKV4-1 Silent p.L72L 0.08 TCGA-FA-A86F-01 2 89185604 89185604 A T IGKV4-1 Missense_Mutation p.T100S 0.12 deleterious(0.03) possibly_damaging(0.714) TCGA-FA-A86F-01 2 89976315 89976315 G A IGKV2D-30 Silent p.Q62Q 0.06 TCGA-FA-A86F-01 2 89976363 89976363 C G IGKV2D-30 Missense_Mutation p.N78K 0.09 tolerated(0.12) benign(0.019) TCGA-FA-A86F-01 2 89976434 89976434 G A IGKV2D-30 Missense_Mutation p.R102K 0.07 tolerated(0.16) benign(0.192) TCGA-FA-A86F-01 2 98340727 98340727 G A ZAP70 Silent p.A76A 0.10 TCGA-FA-A86F-01 3 102157386 102157386 G T ZPLD1 Missense_Mutation p.A35S 0.19 tolerated(0.38) benign(0.017) TCGA-FA-A86F-01 3 134278156 134278156 C T CEP63 Missense_Mutation p.T613I 0.07 deleterious(0.03) benign(0.043) TCGA-FA-A86F-01 3 154836550 154836550 C A MME Missense_Mutation p.L224I 0.11 deleterious(0) possibly_damaging(0.78) TCGA-FA-A86F-01 3 190999976 190999976 C A UTS2B Translation_Start_Site p.M1? 0.04 deleterious(0.04) probably_damaging(0.954) TCGA-FA-A86F-01 3 42674280 42674280 A C NKTR Missense_Mutation p.E246D 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-FA-A86F-01 4 111119485 111119485 T G ELOVL6 Missense_Mutation p.M3L 0.06 tolerated(0.58) benign(0) TCGA-FA-A86F-01 4 118005633 118005633 G A TRAM1L1 Missense_Mutation p.T306M 0.09 tolerated(0.08) benign(0.042) TCGA-FA-A86F-01 4 187539303 187539303 G T FAT1 Missense_Mutation p.P2813T 0.12 probably_damaging(0.954) TCGA-FA-A86F-01 4 47597878 47597878 G A CORIN Missense_Mutation p.R997W 0.07 deleterious(0) possibly_damaging(0.832) TCGA-FA-A86F-01 4 79328899 79328899 C G FRAS1 Silent p.T1404T 0.09 TCGA-FA-A86F-01 5 160757898 160757898 C T GABRB2 Missense_Mutation p.V357I 0.05 tolerated(0.22) benign(0.003) TCGA-FA-A86F-01 5 19483644 19483644 G A CDH18 Silent p.L550L 0.05 TCGA-FA-A86F-01 5 66386019 66386019 T G MAST4 Missense_Mutation p.F265V 0.10 possibly_damaging(0.859) TCGA-FA-A86F-01 6 128221999 128221999 T C THEMIS Missense_Mutation p.I27V 0.14 tolerated(0.77) benign(0.311) TCGA-FA-A86F-01 6 138198239 138198240 AG - TNFAIP3 Frame_Shift_Del p.D279Pfs*5 0.08 TCGA-FA-A86F-01 6 152768599 152768599 C G SYNE1 Silent p.L1221L 0.10 TCGA-FA-A86F-01 6 26158776 26158776 T C HIST1H2BD Nonstop_Mutation p.*127Qext*13 0.11 TCGA-FA-A86F-01 6 34825160 34825160 C T UHRF1BP1 Missense_Mutation p.R496W 0.08 deleterious(0) probably_damaging(0.998) TCGA-FA-A86F-01 6 394899 394899 T C IRF4 Missense_Mutation p.C99R 0.14 deleterious(0) probably_damaging(0.98) TCGA-FA-A86F-01 6 73023228 73023228 A G RIMS1 Missense_Mutation p.Q1328R 0.23 tolerated(0.1) probably_damaging(0.983) TCGA-FA-A86F-01 6 99286506 99286506 C G POU3F2 3'UTR 0.03 TCGA-FA-A86F-01 7 122028770 122028770 C G CADPS2 Missense_Mutation p.D1011H 0.07 deleterious(0) probably_damaging(0.996) TCGA-FA-A86F-01 7 127669744 127669744 T C LRRC4 Missense_Mutation p.E317G 0.14 deleterious(0.04) benign(0.072) TCGA-FA-A86F-01 7 152346254 152346254 C A XRCC2 Nonsense_Mutation p.E106* 0.15 TCGA-FA-A86F-01 7 158935181 158935181 T C VIPR2 Silent p.T36T 0.12 TCGA-FA-A86F-01 7 20683092 20683092 A G ABCB5 Missense_Mutation p.D172G 0.11 deleterious(0.03) benign(0.039) TCGA-FA-A86F-01 7 41739921 41739921 C A INHBA Missense_Mutation p.V18L 0.20 tolerated(0.19) benign(0.079) TCGA-FA-A86F-01 7 50531011 50531011 G A DDC Missense_Mutation p.T454M 0.09 tolerated(0.24) benign(0.018) TCGA-FA-A86F-01 7 80285936 80285936 C A CD36 Silent p.I67I 0.15 TCGA-FA-A86F-01 8 11188939 11188939 C T SLC35G5 Silent p.A108A 0.05 TCGA-FA-A86F-01 8 22052356 22052356 G A BMP1 Silent p.T521T 0.13 TCGA-FA-A86F-01 8 42611024 42611024 C A CHRNA6 Missense_Mutation p.A440S 0.11 tolerated(0.13) probably_damaging(0.999) TCGA-FA-A86F-01 8 65509350 65509350 A G CYP7B1 Missense_Mutation p.M457T 0.04 tolerated(0.4) benign(0.113) TCGA-FA-A86F-01 8 67492515 67492515 A G MYBL1 Silent p.T318T 0.06 TCGA-FA-A86F-01 8 76471075 76471075 T C HNF4G Missense_Mutation p.M299T 0.10 tolerated(0.07) possibly_damaging(0.756) TCGA-FA-A86F-01 9 13110718 13110718 T A MPDZ Missense_Mutation p.I1887F 0.09 deleterious(0) probably_damaging(0.999) TCGA-FA-A86F-01 9 78923585 78923585 G C PCSK5 Missense_Mutation p.C1183S 0.04 deleterious(0.02) benign(0.025) TCGA-FA-A86F-01 9 90343545 90343545 G T CTSL Nonsense_Mutation p.E148* 0.16 TCGA-FA-A86F-01 X 105139459 105139459 C T NRK Missense_Mutation p.H175Y 0.04 deleterious(0) probably_damaging(0.995) TCGA-FA-A86F-01 X 105150452 105150452 T A NRK Missense_Mutation p.N297K 0.03 deleterious(0) possibly_damaging(0.685) TCGA-FA-A86F-01 X 106841163 106841163 G A FRMPD3 Missense_Mutation p.R718H 0.08 tolerated(0.1) benign(0.108) TCGA-FA-A86F-01 X 107288387 107288387 T C VSIG1 Silent p.F9F 0.08 TCGA-FA-A86F-01 X 107977810 107977810 C A IRS4 Missense_Mutation p.G589W 0.10 deleterious_low_confidence(0) unknown(0) TCGA-FA-A86F-01 X 115304549 115304549 G T AGTR2 Missense_Mutation p.W339L 0.05 tolerated(0.82) benign(0) TCGA-FA-A86F-01 X 115588850 115588850 G A SLC6A14 Missense_Mutation p.A564T 0.06 tolerated(0.2) benign(0.189) TCGA-FA-A86F-01 X 132091067 132091067 C A HS6ST2 Missense_Mutation p.G239V 0.07 deleterious(0) probably_damaging(0.998) TCGA-FA-A86F-01 X 13835208 13835208 G A GPM6B 5'UTR 0.30 TCGA-FA-A86F-01 X 144909471 144909471 C T TMEM257 Silent p.Y92Y 0.04 TCGA-FA-A86F-01 X 30873153 30873153 G T TAB3 Missense_Mutation p.P210Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-FA-A86F-01 X 37663373 37663373 A T CYBB Nonsense_Mutation p.K381* 0.12 TCGA-FA-A86F-01 X 45605590 45605590 C T MIR221 RNA 0.10 TCGA-FA-A86F-01 X 64137903 64137903 A G ZC4H2 Intron 0.11 TCGA-FA-A86F-01 X 68058642 68058642 C A EFNB1 Missense_Mutation p.P104Q 0.04 deleterious(0) probably_damaging(1) TCGA-FA-A86F-01 X 69504537 69504537 T A RAB41 3'UTR 0.20 TCGA-FF-8041-01 10 102778029 102778029 T G PDZD7 Missense_Mutation p.E450A 0.42 tolerated(0.08) benign(0.114) TCGA-FF-8041-01 10 104160764 104160764 G A NFKB2 Missense_Mutation p.G677R 0.50 deleterious(0) probably_damaging(0.962) TCGA-FF-8041-01 10 112572301 112572301 C T RBM20 Missense_Mutation p.R716W 0.26 tolerated(0.12) benign(0.001) TCGA-FF-8041-01 10 133962951 133962951 C T JAKMIP3 Silent p.H628H 0.47 TCGA-FF-8041-01 10 135125512 135125512 G A ZNF511 Intron 0.16 TCGA-FF-8041-01 10 14816655 14816655 G A FAM107B Missense_Mutation p.T3M 0.30 tolerated_low_confidence(0.2) benign(0.024) TCGA-FF-8041-01 10 43650484 43650484 C T CSGALNACT2 5'UTR 0.41 TCGA-FF-8041-01 10 63809033 63809033 G A ARID5B Intron 0.56 TCGA-FF-8041-01 10 95517861 95517861 C A LGI1 5'UTR 0.43 TCGA-FF-8041-01 10 95552602 95552602 C A LGI1 Silent p.G202G 0.45 TCGA-FF-8041-01 10 96580331 96580331 G A CYP2C19 Missense_Mutation p.E300K 0.29 deleterious(0.02) possibly_damaging(0.777) TCGA-FF-8041-01 10 98369476 98369476 G A PIK3AP1 Silent p.S721S 0.42 TCGA-FF-8041-01 11 100922186 100922186 G T PGR Missense_Mutation p.L776M 0.36 deleterious(0) probably_damaging(1) TCGA-FF-8041-01 11 10777233 10777233 G T CTR9 Missense_Mutation p.L131F 0.41 deleterious(0) probably_damaging(0.935) TCGA-FF-8041-01 11 108044441 108044441 G A NPAT Nonsense_Mutation p.Q424* 0.14 TCGA-FF-8041-01 11 111613358 111613360 GTT - PPP2R1B In_Frame_Del p.T530del 0.13 TCGA-FF-8041-01 11 112123070 112123070 C T PLET1 Splice_Site p.X150_splice 0.41 TCGA-FF-8041-01 11 113576985 113576986 - AGGCA TMPRSS5 5'UTR 0.30 TCGA-FF-8041-01 11 114576570 114576571 - A NXPE2 Frame_Shift_Ins p.M335Nfs*8 0.28 TCGA-FF-8041-01 11 46564251 46564251 C T AMBRA1 Missense_Mutation p.R349K 0.22 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-FF-8041-01 11 46819515 46819515 G C CKAP5 Missense_Mutation p.T393R 0.07 deleterious(0) probably_damaging(0.998) TCGA-FF-8041-01 11 61291310 61291310 C T SYT7 Missense_Mutation p.G374E 0.22 deleterious(0) possibly_damaging(0.885) TCGA-FF-8041-01 11 64594201 64594201 C T CDC42BPG Silent p.E1485E 0.60 TCGA-FF-8041-01 11 64699058 64699058 C T PPP2R5B Missense_Mutation p.P325S 0.53 deleterious(0.01) probably_damaging(0.996) TCGA-FF-8041-01 11 65625577 65625577 G A CFL1 5'UTR 0.26 TCGA-FF-8041-01 11 66359191 66359191 A T CCDC87 Silent p.T432T 0.32 TCGA-FF-8041-01 11 74441971 74441971 G A CHRDL2 5'UTR 0.09 TCGA-FF-8041-01 11 78437206 78437208 TGT - TENM4 In_Frame_Del p.T1156del 0.19 TCGA-FF-8041-01 12 100594700 100594700 A G ACTR6 Intron 0.41 TCGA-FF-8041-01 12 100594731 100594731 A T ACTR6 Intron 0.47 TCGA-FF-8041-01 12 100594762 100594762 A C ACTR6 Intron 0.43 TCGA-FF-8041-01 12 120518805 120518805 G A CCDC64 Missense_Mutation p.D475N 0.26 deleterious(0) probably_damaging(0.969) TCGA-FF-8041-01 12 26875393 26875393 T A ITPR2 Silent p.A154A 0.20 TCGA-FF-8041-01 12 33579301 33579301 G T SYT10 Missense_Mutation p.T94N 0.16 tolerated(0.33) benign(0) TCGA-FF-8041-01 12 3692249 3692249 C T PRMT8 Missense_Mutation p.T285M 0.20 tolerated(0.1) benign(0.097) TCGA-FF-8041-01 12 4923311 4923311 T C KCNA6 3'UTR 0.15 TCGA-FF-8041-01 12 49427679 49427679 C T KMT2D Silent p.Q3603Q 0.07 TCGA-FF-8041-01 12 57493818 57493818 T C STAT6 Missense_Mutation p.D523G 0.36 deleterious(0) probably_damaging(1) TCGA-FF-8041-01 12 57857566 57857566 G C GLI1 Missense_Mutation p.G31A 0.34 tolerated(0.45) probably_damaging(0.985) TCGA-FF-8041-01 12 6710854 6710854 G A CHD4 Nonsense_Mutation p.R173* 0.34 TCGA-FF-8041-01 12 70087575 70087575 G A BEST3 Silent p.H120H 0.36 TCGA-FF-8041-01 12 81110862 81110862 G T MYF5 Missense_Mutation p.C7F 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-FF-8041-01 12 81472143 81472143 G A ACSS3 Missense_Mutation p.E82K 0.37 tolerated(0.35) benign(0.082) TCGA-FF-8041-01 12 94543629 94543629 C T PLXNC1 Silent p.L294L 0.50 TCGA-FF-8041-01 13 103303727 103303727 C T TPP2 Intron 0.45 TCGA-FF-8041-01 13 113909104 113909104 C T CUL4A Missense_Mutation p.T617M 0.22 deleterious(0) probably_damaging(0.999) TCGA-FF-8041-01 13 35691562 35691562 C T NBEA Missense_Mutation p.P672S 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-FF-8041-01 13 41507882 41507882 C T ELF1 Silent p.Q513Q 0.46 TCGA-FF-8041-01 13 72440219 72440219 G C DACH1 Missense_Mutation p.T230R 0.50 probably_damaging(1) TCGA-FF-8041-01 13 77657173 77657173 G A MYCBP2 Missense_Mutation p.A3639V 0.39 probably_damaging(0.98) TCGA-FF-8041-01 14 106067826 106067826 C T IGHE Silent p.K80K 0.53 TCGA-FF-8041-01 14 106330461 106330461 A G IGHJ4 Missense_Mutation p.Y4H 0.27 benign(0.002) TCGA-FF-8041-01 14 107170375 107170375 A G IGHV1-69 5'UTR 0.35 TCGA-FF-8041-01 14 107178842 107178842 G C IGHV2-70 Missense_Mutation p.A112G 0.17 tolerated(0.08) benign(0.082) TCGA-FF-8041-01 14 107178924 107178924 T A IGHV2-70 Nonsense_Mutation p.K85* 0.36 TCGA-FF-8041-01 14 107218800 107218800 C G IGHV3-74 Missense_Mutation p.S76T 0.23 tolerated_low_confidence(0.41) benign(0.005) TCGA-FF-8041-01 14 107218877 107218877 G C IGHV3-74 Missense_Mutation p.S50R 0.19 deleterious_low_confidence(0.03) benign(0.018) TCGA-FF-8041-01 14 23865523 23865523 C T MYH6 Missense_Mutation p.R800H 0.46 deleterious(0) probably_damaging(0.976) TCGA-FF-8041-01 14 30046443 30046443 C T PRKD1 3'UTR 0.23 TCGA-FF-8041-01 14 30046446 30046446 A T PRKD1 Nonstop_Mutation p.*913Rext*21 0.23 TCGA-FF-8041-01 14 30046591 30046591 A G PRKD1 Silent p.S864S 0.20 TCGA-FF-8041-01 14 31355170 31355170 A C COCH Missense_Mutation p.S377R 0.23 deleterious(0) probably_damaging(0.999) TCGA-FF-8041-01 14 50844942 50844942 G A CDKL1 Intron 0.22 TCGA-FF-8041-01 14 58598352 58598352 T C C14orf37 Missense_Mutation p.E570G 0.36 tolerated(0.2) benign(0.008) TCGA-FF-8041-01 14 65008064 65008064 C T HSPA2 Missense_Mutation p.T166M 0.48 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-FF-8041-01 14 69256915 69256928 CCGTCTTGTAGCGG - ZFP36L1 Frame_Shift_Del p.S113Rfs*7 0.17 TCGA-FF-8041-01 15 40383976 40383976 G A BMF 3'UTR 0.47 TCGA-FF-8041-01 15 40453452 40453452 C T BUB1B Silent p.L11L 0.22 TCGA-FF-8041-01 15 45003766 45003781 GCTGTGCTCGCGCTAC - B2M Frame_Shift_Del p.A8Sfs*31 0.56 TCGA-FF-8041-01 15 48063877 48063877 G A SEMA6D Silent p.R1039R 0.05 TCGA-FF-8041-01 15 64455114 64455114 G A PPIB Silent p.F24F 0.17 TCGA-FF-8041-01 15 84287010 84287010 G A SH3GL3 Missense_Mutation p.V339M 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-FF-8041-01 16 11010310 11010310 C - CIITA Frame_Shift_Del p.L1020Sfs*30 0.22 TCGA-FF-8041-01 16 11348637 11348637 G T SOCS1 3'UTR 0.35 TCGA-FF-8041-01 16 11348808 11348808 C T SOCS1 Silent p.E176E 0.55 TCGA-FF-8041-01 16 15851692 15851692 C T MYH11 Missense_Mutation p.E530K 0.57 possibly_damaging(0.508) TCGA-FF-8041-01 16 2338028 2338028 G A ABCA3 Silent p.L1001L 0.35 TCGA-FF-8041-01 16 25186263 25186263 A G LCMT1 Missense_Mutation p.E297G 0.22 deleterious(0) probably_damaging(0.98) TCGA-FF-8041-01 16 27373599 27373599 T C IL4R Missense_Mutation p.L309P 0.16 deleterious(0) probably_damaging(0.994) TCGA-FF-8041-01 16 28845868 28845884 TCAGCCCCGCCGATGAT - ATXN2L Frame_Shift_Del p.S763Afs*262 0.48 TCGA-FF-8041-01 16 3434848 3434848 T C ZSCAN32 Missense_Mutation p.Q70R 0.26 tolerated(1) benign(0.001) TCGA-FF-8041-01 16 4241993 4241993 A C SRL 3'UTR 0.75 TCGA-FF-8041-01 16 55886898 55886898 A G CES5A Missense_Mutation p.F419L 0.05 tolerated(1) benign(0.302) TCGA-FF-8041-01 16 57406453 57406453 C T CX3CL1 5'UTR 0.27 TCGA-FF-8041-01 16 66919939 66919939 A G PDP2 3'UTR 0.22 TCGA-FF-8041-01 16 67381488 67381488 A G LRRC36 Missense_Mutation p.E161G 0.05 deleterious(0) possibly_damaging(0.575) TCGA-FF-8041-01 16 72173260 72173260 G A PMFBP1 Silent p.A282A 0.44 TCGA-FF-8041-01 16 840179 840179 C T CHTF18 Silent p.G203G 0.21 TCGA-FF-8041-01 16 86613545 86613545 C A FOXL1 3'UTR 0.38 TCGA-FF-8041-01 16 88800422 88800422 G A PIEZO1 Nonsense_Mutation p.Q741* 0.52 TCGA-FF-8041-01 17 21092024 21092024 A G DHRS7B Missense_Mutation p.Y207C 0.42 deleterious(0.01) probably_damaging(0.988) TCGA-FF-8041-01 17 30190329 30190329 G A UTP6 3'UTR 0.37 TCGA-FF-8041-01 17 33504529 33504529 C T UNC45B Missense_Mutation p.R721W 0.41 deleterious(0) probably_damaging(0.999) TCGA-FF-8041-01 17 34894125 34894125 A G PIGW Missense_Mutation p.D392G 0.41 deleterious(0.02) benign(0.33) TCGA-FF-8041-01 17 38612729 38612729 G A IGFBP4 Missense_Mutation p.G224D 0.13 deleterious(0) probably_damaging(1) TCGA-FF-8041-01 17 39021152 39021152 A T KRT12 Missense_Mutation p.V238E 0.17 deleterious(0) probably_damaging(1) TCGA-FF-8041-01 17 39783111 39783111 C T KRT17 5'Flank 0.38 TCGA-FF-8041-01 17 42155737 42155737 C T HDAC5 3'UTR 0.26 TCGA-FF-8041-01 17 42430050 42430050 C T GRN Missense_Mutation p.R556C 0.47 deleterious(0.04) probably_damaging(0.969) TCGA-FF-8041-01 17 46799191 46799191 G A PRAC1 Missense_Mutation p.S49L 0.33 tolerated_low_confidence(0.92) possibly_damaging(0.519) TCGA-FF-8041-01 17 48757231 48757231 G T ABCC3 Missense_Mutation p.V1260F 0.16 deleterious(0) probably_damaging(0.91) TCGA-FF-8041-01 17 56408621 56408621 A G BZRAP1 5'Flank 0.23 TCGA-FF-8041-01 17 685705 685705 G A RNMTL1 Nonsense_Mutation p.W29* 0.56 TCGA-FF-8041-01 18 21743050 21743050 T A OSBPL1A 3'UTR 0.50 TCGA-FF-8041-01 18 31323064 31323064 T C ASXL3 Silent p.S1084S 0.18 TCGA-FF-8041-01 18 44392291 44392291 A G PIAS2 3'UTR 0.24 TCGA-FF-8041-01 18 44580764 44580764 C A KATNAL2 Intron 0.23 TCGA-FF-8041-01 18 47799097 47799097 A G MBD1 Silent p.I576I 0.26 TCGA-FF-8041-01 19 16687805 16687805 C A MED26 Missense_Mutation p.R279L 0.17 tolerated(0.1) benign(0.214) TCGA-FF-8041-01 19 16687806 16687806 G A MED26 Missense_Mutation p.R279W 0.17 deleterious(0) probably_damaging(0.987) TCGA-FF-8041-01 19 17948006 17948006 G A JAK3 Missense_Mutation p.A573V 0.51 deleterious(0.05) probably_damaging(0.959) TCGA-FF-8041-01 19 19790525 19790525 C T ZNF101 Missense_Mutation p.H243Y 0.27 deleterious(0) probably_damaging(1) TCGA-FF-8041-01 19 19822227 19822227 T C ZNF14 Silent p.G621G 0.43 TCGA-FF-8041-01 19 38376490 38376490 G A WDR87 Silent p.A2568A 0.21 TCGA-FF-8041-01 19 40964385 40964385 G A BLVRB Silent p.H49H 0.55 TCGA-FF-8041-01 19 43858418 43858418 C T CD177 Missense_Mutation p.R85C 0.51 deleterious(0.02) benign(0.378) TCGA-FF-8041-01 19 46116911 46116911 G A EML2 Missense_Mutation p.A772V 0.16 tolerated(0.07) benign(0.065) TCGA-FF-8041-01 19 46352062 46352062 G A SYMPK Silent p.N124N 0.53 TCGA-FF-8041-01 19 48558246 48558246 C T PLA2G4C Missense_Mutation p.E450K 0.52 tolerated(0.08) benign(0.059) TCGA-FF-8041-01 19 50779375 50779375 C T MYH14 Missense_Mutation p.R1199C 0.10 deleterious(0.02) benign(0.221) TCGA-FF-8041-01 19 50939945 50939945 A C MYBPC2 Missense_Mutation p.K139N 0.08 deleterious(0.04) benign(0.29) TCGA-FF-8041-01 19 53456125 53456125 G C ZNF816 Silent p.R23R 0.30 TCGA-FF-8041-01 19 6591012 6591012 A T CD70 Translation_Start_Site p.M1? 0.69 deleterious(0) benign(0.227) TCGA-FF-8041-01 1 1309461 1309461 G A AURKAIP1 Silent p.N139N 0.40 TCGA-FF-8041-01 1 152325925 152325925 G A FLG2 Missense_Mutation p.T1446I 0.48 possibly_damaging(0.592) TCGA-FF-8041-01 1 16945730 16945730 G A RP5-1182A14.5 3'Flank 0.12 TCGA-FF-8041-01 1 19595864 19595864 C T AKR7L Intron 0.22 TCGA-FF-8041-01 1 22304901 22304901 G A CELA3B Missense_Mutation p.R28H 0.19 deleterious(0.01) possibly_damaging(0.887) TCGA-FF-8041-01 1 225332227 225332227 G A DNAH14 Missense_Mutation p.R624Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-FF-8041-01 1 226924388 226924388 C G ITPKB Missense_Mutation p.E258Q 0.47 deleterious_low_confidence(0) benign(0.154) TCGA-FF-8041-01 1 226925148 226925148 G A ITPKB Silent p.Y4Y 0.18 TCGA-FF-8041-01 1 228612593 228612593 T C HIST3H3 3'UTR 0.41 TCGA-FF-8041-01 1 233802348 233802348 C G KCNK1 Silent p.G121G 0.45 TCGA-FF-8041-01 1 235922585 235922585 C T LYST Missense_Mutation p.V2190I 0.26 tolerated_low_confidence(0.43) benign(0.002) TCGA-FF-8041-01 1 23720374 23720374 C T TCEA3 Missense_Mutation p.E273K 0.07 deleterious(0) possibly_damaging(0.491) TCGA-FF-8041-01 1 248059470 248059470 C T OR2W3 Silent p.A194A 0.19 TCGA-FF-8041-01 1 36029385 36029385 C T NCDN Missense_Mutation p.T543I 0.21 tolerated(0.07) benign(0.027) TCGA-FF-8041-01 1 53980302 53980302 C T GLIS1 Missense_Mutation p.D452N 0.18 deleterious(0.01) possibly_damaging(0.906) TCGA-FF-8041-01 1 8390740 8390740 C T SLC45A1 Missense_Mutation p.P396L 0.26 tolerated(0.06) benign(0.341) TCGA-FF-8041-01 1 92772770 92772770 A G RPAP2 Missense_Mutation p.Q142R 0.22 tolerated(0.76) benign(0.002) TCGA-FF-8041-01 20 16360313 16360313 G A KIF16B Silent p.L778L 0.37 TCGA-FF-8041-01 20 43129937 43129937 G A SERINC3 Missense_Mutation p.R354C 0.48 deleterious(0.01) probably_damaging(0.992) TCGA-FF-8041-01 20 46265035 46265035 C T NCOA3 Silent p.S635S 0.18 TCGA-FF-8041-01 20 60427856 60427856 C T CDH4 Missense_Mutation p.P260L 0.35 deleterious(0) probably_damaging(1) TCGA-FF-8041-01 20 60892438 60892438 C T LAMA5 Missense_Mutation p.A2492T 0.33 benign(0.036) TCGA-FF-8041-01 20 9374297 9374297 C T PLCB4 Silent p.N462N 0.18 TCGA-FF-8041-01 21 38437947 38437947 T A PIGP Missense_Mutation p.I138F 0.25 deleterious(0) possibly_damaging(0.724) TCGA-FF-8041-01 22 23223274 23223274 T G IGLV3-1 Intron 0.37 TCGA-FF-8041-01 22 23223304 23223304 A T IGLV3-1 Missense_Mutation p.Q25L 0.26 deleterious(0) probably_damaging(0.997) TCGA-FF-8041-01 22 23223316 23223316 T A IGLV3-1 Missense_Mutation p.V29E 0.15 deleterious(0.01) possibly_damaging(0.895) TCGA-FF-8041-01 22 23223335 23223335 G C IGLV3-1 Missense_Mutation p.Q35H 0.31 deleterious(0) possibly_damaging(0.492) TCGA-FF-8041-01 22 23223387 23223388 - GGTATCA IGLV3-1 Frame_Shift_Ins p.Q56Vfs*17 0.10 TCGA-FF-8041-01 22 23223441 23223441 A G IGLV3-1 Missense_Mutation p.K71E 0.42 tolerated(1) benign(0.001) TCGA-FF-8041-01 22 23223487 23223487 G T IGLV3-1 Missense_Mutation p.G86V 0.37 deleterious(0) probably_damaging(0.927) TCGA-FF-8041-01 22 23223489 23223489 A C IGLV3-1 Missense_Mutation p.N87H 0.19 deleterious(0) benign(0.412) TCGA-FF-8041-01 22 23223507 23223507 A T IGLV3-1 Missense_Mutation p.I93F 0.18 deleterious(0) probably_damaging(0.977) TCGA-FF-8041-01 22 23223544 23223544 A T IGLV3-1 Missense_Mutation p.Y105F 0.21 tolerated(0.06) benign(0.408) TCGA-FF-8041-01 22 23243365 23243365 T A IGLC2 Missense_Mutation p.Y71N 0.19 probably_damaging(0.999) TCGA-FF-8041-01 22 26164606 26164606 G A MYO18B Silent p.V241V 0.23 TCGA-FF-8041-01 22 36907798 36907798 C T EIF3D Missense_Mutation p.R462H 0.47 tolerated(0.13) benign(0.051) TCGA-FF-8041-01 22 38035817 38035817 G A SH3BP1 Missense_Mutation p.R8H 0.11 deleterious(0) possibly_damaging(0.885) TCGA-FF-8041-01 22 39627798 39627798 G A PDGFB Silent p.A95A 0.47 TCGA-FF-8041-01 22 39714450 39714450 C T RPL3 Missense_Mutation p.A51T 0.26 deleterious(0.01) probably_damaging(0.932) TCGA-FF-8041-01 22 40661027 40661027 G T TNRC6B Missense_Mutation p.A265S 0.53 tolerated(0.52) benign(0.04) TCGA-FF-8041-01 22 41188619 41188619 A C SLC25A17 Missense_Mutation p.Y82D 0.23 deleterious(0) probably_damaging(0.992) TCGA-FF-8041-01 2 114004442 114004442 G A PAX8 Missense_Mutation p.P27L 0.42 deleterious(0) probably_damaging(1) TCGA-FF-8041-01 2 128758026 128758026 C T SAP130 Missense_Mutation p.R317K 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FF-8041-01 2 130858289 130858289 A G POTEF Missense_Mutation p.M401T 0.29 tolerated_low_confidence(0.07) benign(0.076) TCGA-FF-8041-01 2 141259273 141259273 G A LRP1B Missense_Mutation p.L2945F 0.47 possibly_damaging(0.587) TCGA-FF-8041-01 2 152300225 152300225 T G RIF1 Splice_Site p.X662_splice 0.38 TCGA-FF-8041-01 2 168107691 168107691 G T XIRP2 Missense_Mutation p.R3263S 0.10 possibly_damaging(0.795) TCGA-FF-8041-01 2 172779003 172779003 G A HAT1 5'UTR 0.49 TCGA-FF-8041-01 2 182543437 182543437 C A NEUROD1 Missense_Mutation p.D51Y 0.38 deleterious(0.03) possibly_damaging(0.543) TCGA-FF-8041-01 2 197298113 197298113 A G HECW2 Missense_Mutation p.V12A 0.38 tolerated_low_confidence(1) benign(0.282) TCGA-FF-8041-01 2 209358138 209358138 A C PTH2R Silent p.T469T 0.16 TCGA-FF-8041-01 2 227661565 227661565 T A IRS1 Silent p.G630G 0.17 TCGA-FF-8041-01 2 241615917 241615917 C A AQP12B 3'UTR 0.29 TCGA-FF-8041-01 2 27147877 27147877 C T DPYSL5 Silent p.Y128Y 0.31 TCGA-FF-8041-01 2 61147230 61147230 T A REL Missense_Mutation p.L303Q 0.36 deleterious(0) possibly_damaging(0.907) TCGA-FF-8041-01 2 71212171 71212171 C T ANKRD53 Missense_Mutation p.A445V 0.23 tolerated(0.17) benign(0.118) TCGA-FF-8041-01 2 89160407 89160407 C T IGKJ4 Missense_Mutation p.E10K 0.42 benign(0.294) TCGA-FF-8041-01 2 89161548 89161548 C T IGKC 5'Flank 0.41 TCGA-FF-8041-01 2 96810595 96810595 A C DUSP2 Missense_Mutation p.C139G 0.40 deleterious(0.04) benign(0.079) TCGA-FF-8041-01 3 112059764 112059764 T G CD200 Missense_Mutation p.F35V 0.28 tolerated_low_confidence(0.06) benign(0.133) TCGA-FF-8041-01 3 122632728 122632728 G A SEMA5B Silent p.C757C 0.48 TCGA-FF-8041-01 3 134960112 134960112 A G EPHB1 Silent p.R823R 0.06 TCGA-FF-8041-01 3 194080325 194080325 C G LRRC15 Missense_Mutation p.S489T 0.21 tolerated(0.49) benign(0.001) TCGA-FF-8041-01 3 37367249 37367249 C A GOLGA4 Missense_Mutation p.S1313Y 0.17 probably_damaging(0.996) TCGA-FF-8041-01 3 42610481 42610481 C G SEC22C Missense_Mutation p.A20P 0.17 deleterious(0) probably_damaging(0.999) TCGA-FF-8041-01 3 44762425 44762425 G C ZNF502 Missense_Mutation p.G39A 0.22 tolerated(0.57) benign(0.023) TCGA-FF-8041-01 3 50332345 50332345 T G HYAL3 Missense_Mutation p.Q230P 0.41 deleterious(0) possibly_damaging(0.868) TCGA-FF-8041-01 4 107246152 107246152 C T AIMP1 Missense_Mutation p.R20C 0.22 tolerated(0.07) benign(0.021) TCGA-FF-8041-01 4 111539469 111539469 C T PITX2 Missense_Mutation p.A263T 0.24 deleterious(0.05) benign(0.381) TCGA-FF-8041-01 4 17606285 17606285 T C LAP3 Missense_Mutation p.F419L 0.35 tolerated(0.18) benign(0.072) TCGA-FF-8041-01 4 187629904 187629904 A C FAT1 Missense_Mutation p.F360V 0.19 benign(0.313) TCGA-FF-8041-01 4 57261287 57261287 G T PPAT 3'UTR 0.53 TCGA-FF-8041-01 5 118728686 118728686 G A TNFAIP8 Silent p.E69E 0.31 TCGA-FF-8041-01 5 125813449 125813449 C T GRAMD3 Silent p.N199N 0.24 TCGA-FF-8041-01 5 131013444 131013444 C G FNIP1 Missense_Mutation p.D491H 0.31 deleterious(0) probably_damaging(0.914) TCGA-FF-8041-01 5 132159799 132159799 G A SHROOM1 Silent p.P518P 0.18 TCGA-FF-8041-01 5 133494195 133494195 C T SKP1 Missense_Mutation p.R136H 0.35 tolerated(0.07) benign(0.004) TCGA-FF-8041-01 5 139917069 139917069 C T ANKHD1 Nonsense_Mutation p.R2375* 0.40 TCGA-FF-8041-01 5 140242750 140242750 C T AC005609.1 Missense_Mutation p.A76T 0.45 deleterious_low_confidence(0.03) possibly_damaging(0.695) TCGA-FF-8041-01 5 140432615 140432615 G A PCDHB1 Missense_Mutation p.M520I 0.42 deleterious(0.01) benign(0.009) TCGA-FF-8041-01 5 140554429 140554429 G A PCDHB7 Silent p.L671L 0.52 TCGA-FF-8041-01 5 140564228 140564228 G A PCDHB16 Silent p.S698S 0.33 TCGA-FF-8041-01 5 143200204 143200206 GAA - HMHB1 3'UTR 0.33 TCGA-FF-8041-01 5 145969730 145969730 C T PPP2R2B Missense_Mutation p.R374H 0.34 deleterious(0.03) benign(0.02) TCGA-FF-8041-01 5 157161623 157161623 C G THG1L Missense_Mutation p.S136R 0.40 deleterious(0.04) possibly_damaging(0.475) TCGA-FF-8041-01 5 1878377 1878377 G A IRX4 Silent p.G422G 0.33 TCGA-FF-8041-01 5 2752510 2752510 G A C5orf38 Silent p.A44A 0.29 TCGA-FF-8041-01 5 96116871 96116871 T - ERAP1 Frame_Shift_Del p.I827* 0.25 TCGA-FF-8041-01 6 107100238 107100238 G A QRSL1 Missense_Mutation p.D238N 0.21 tolerated(0.09) benign(0.098) TCGA-FF-8041-01 6 108070921 108070921 C T SCML4 Missense_Mutation p.V85I 0.39 tolerated(1) benign(0.001) TCGA-FF-8041-01 6 124676480 124676480 G C NKAIN2 Missense_Mutation p.G87A 0.50 deleterious(0.03) benign(0.197) TCGA-FF-8041-01 6 135358694 135358694 G C HBS1L Intron 0.40 TCGA-FF-8041-01 6 138198372 138198376 CTCAT - TNFAIP3 Frame_Shift_Del p.L324Qfs*7 0.61 TCGA-FF-8041-01 6 155577707 155577707 G A TIAM2 Missense_Mutation p.E1520K 0.46 deleterious(0.03) benign(0.194) TCGA-FF-8041-01 6 158613139 158613139 C T GTF2H5 Nonsense_Mutation p.R56* 0.50 TCGA-FF-8041-01 6 158613170 158613170 T C GTF2H5 Missense_Mutation p.F66S 0.50 deleterious(0.01) benign(0.334) TCGA-FF-8041-01 6 160874598 160874598 C A SLC22A3 3'Flank 0.23 TCGA-FF-8041-01 6 26056385 26056385 C T HIST1H1C Missense_Mutation p.G91D 0.46 deleterious(0) probably_damaging(0.998) TCGA-FF-8041-01 6 26056488 26056488 C T HIST1H1C Missense_Mutation p.V57I 0.43 tolerated(0.12) possibly_damaging(0.574) TCGA-FF-8041-01 6 34803143 34803144 - CACA UHRF1BP1 Frame_Shift_Ins p.Q249Hfs*15 0.10 TCGA-FF-8041-01 6 35436906 35436906 G A RPL10A Intron 0.15 TCGA-FF-8041-01 6 42797411 42797411 A T GLTSCR1L Missense_Mutation p.N447I 0.53 deleterious(0.01) possibly_damaging(0.447) TCGA-FF-8041-01 6 43968369 43968369 G C C6orf223 Missense_Mutation p.A5P 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-FF-8041-01 6 55659189 55659189 G T BMP5 Silent p.A240A 0.17 TCGA-FF-8041-01 6 65300359 65300359 C G EYS Missense_Mutation p.A1801P 0.28 tolerated_low_confidence(0.23) benign(0.001) TCGA-FF-8041-01 7 123672815 123672815 C T TMEM229A Silent p.P81P 0.61 TCGA-FF-8041-01 7 12409974 12409974 A G VWDE Missense_Mutation p.L653P 0.30 tolerated(0.16) possibly_damaging(0.641) TCGA-FF-8041-01 7 138602479 138602479 C T KIAA1549 Silent p.P631P 0.15 TCGA-FF-8041-01 7 2976756 2976756 A C CARD11 Missense_Mutation p.I419S 0.42 tolerated(0.31) probably_damaging(0.943) TCGA-FF-8041-01 7 44797053 44797070 GCTGCTGCAGCTGTGGCT - ZMIZ2 In_Frame_Del p.V153_A158del 0.23 TCGA-FF-8041-01 7 48314897 48314897 C T ABCA13 Silent p.S1878S 0.19 TCGA-FF-8041-01 7 5568917 5568917 C T ACTB Missense_Mutation p.D80N 0.23 deleterious_low_confidence(0.02) benign(0.066) TCGA-FF-8041-01 7 72850223 72850223 G C FZD9 3'UTR 0.42 TCGA-FF-8041-01 7 95025645 95025645 C T PON3 Silent p.A6A 0.17 TCGA-FF-8041-01 8 101721960 101721960 C A PABPC1 Splice_Site p.X325_splice 0.33 TCGA-FF-8041-01 8 104513283 104513283 G C RIMS2 Missense_Mutation p.V57L 0.36 deleterious_low_confidence(0) benign(0.006) TCGA-FF-8041-01 8 110495331 110495331 G T PKHD1L1 Missense_Mutation p.W3191C 0.31 deleterious(0) probably_damaging(1) TCGA-FF-8041-01 8 23429088 23429088 C A SLC25A37 Missense_Mutation p.A246D 0.57 deleterious(0) probably_damaging(0.995) TCGA-FF-8041-01 8 26237399 26237399 T C BNIP3L 5'Flank 0.36 TCGA-FF-8041-01 8 28625584 28625584 C T INTS9 3'UTR 0.23 TCGA-FF-8041-01 8 38008373 38008373 C T STAR 5'UTR 0.24 TCGA-FF-8041-01 8 42608317 42608317 A G CHRNA6 3'UTR 0.32 TCGA-FF-8041-01 8 67922976 67922976 C T PPP1R42 Missense_Mutation p.V176I 0.30 tolerated(0.19) benign(0.065) TCGA-FF-8041-01 8 75898242 75898242 A T CRISPLD1 Missense_Mutation p.E7V 0.25 tolerated(0.21) benign(0.188) TCGA-FF-8041-01 9 104170651 104170651 G A ZNF189 Missense_Mutation p.E201K 0.41 deleterious(0.02) probably_damaging(0.966) TCGA-FF-8041-01 9 107618174 107618177 CACT - ABCA1 Intron 0.08 TCGA-FF-8041-01 9 109691621 109691621 G A ZNF462 Missense_Mutation p.V1810I 0.19 probably_damaging(0.981) TCGA-FF-8041-01 9 113530267 113530267 G T MUSK Missense_Mutation p.S363I 0.40 deleterious(0.02) probably_damaging(0.992) TCGA-FF-8041-01 9 121929513 121929513 G A BRINP1 Missense_Mutation p.P712L 0.35 deleterious(0) probably_damaging(0.982) TCGA-FF-8041-01 9 123931934 123931934 G T CNTRL Missense_Mutation p.G2039V 0.42 benign(0.028) TCGA-FF-8041-01 9 139306549 139306549 A G PMPCA Missense_Mutation p.T58A 0.24 tolerated(0.58) benign(0.002) TCGA-FF-8041-01 9 26990129 26990129 C T IFT74 Intron 0.40 TCGA-FF-8041-01 9 82337469 82337469 T G TLE4 Missense_Mutation p.L697R 0.35 deleterious(0.01) probably_damaging(1) TCGA-FF-8041-01 9 86258428 86258428 T C IDNK Silent p.D99D 0.20 TCGA-FF-8041-01 X 100509422 100509422 C T DRP2 Silent p.S662S 0.19 TCGA-FF-8041-01 X 105449437 105449437 G A MUM1L1 Silent p.E4E 0.52 TCGA-FF-8041-01 X 118109491 118109491 G A LONRF3 Missense_Mutation p.G250S 0.17 deleterious(0.01) possibly_damaging(0.527) TCGA-FF-8041-01 X 118715490 118715490 G T UBE2A Nonsense_Mutation p.E58* 0.40 TCGA-FF-8041-01 X 134166906 134166906 G A FAM127A 3'UTR 0.22 TCGA-FF-8041-01 X 144904787 144904787 G A SLITRK2 Missense_Mutation p.V282I 0.17 tolerated(0.42) benign(0) TCGA-FF-8041-01 X 151820129 151820129 T C GABRQ Missense_Mutation p.Y348H 0.16 deleterious(0.05) benign(0.272) TCGA-FF-8041-01 X 151820139 151820139 A C GABRQ Missense_Mutation p.Y351S 0.17 deleterious(0) probably_damaging(1) TCGA-FF-8041-01 X 153037066 153037066 C T PLXNB3 Missense_Mutation p.P848S 0.21 tolerated(0.47) benign(0.008) TCGA-FF-8041-01 X 153421999 153421999 G A OPN1LW Missense_Mutation p.M325I 0.15 deleterious(0) probably_damaging(0.989) TCGA-FF-8041-01 X 1584574 1584574 T A P2RY8 Missense_Mutation p.Y293F 0.62 tolerated(0.06) probably_damaging(0.936) TCGA-FF-8041-01 X 16711587 16711587 G T CTPS2 Silent p.I154I 0.28 TCGA-FF-8041-01 X 33146325 33146325 C G DMD Intron 0.39 TCGA-FF-8041-01 X 33357430 33357430 G A DMD 5'UTR 0.43 TCGA-FF-8041-01 X 47092477 47092477 C T USP11 Missense_Mutation p.A55V 0.27 tolerated_low_confidence(0.1) possibly_damaging(0.499) TCGA-FF-8041-01 X 48209473 48209473 G A SSX3 Silent p.L139L 0.43 TCGA-FF-8041-01 X 49061779 49061779 C T CACNA1F Missense_Mutation p.V1918M 0.48 deleterious(0) benign(0.001) TCGA-FF-8041-01 X 56591532 56591532 T C UBQLN2 Missense_Mutation p.M409T 0.44 deleterious(0.01) benign(0.191) TCGA-FF-8041-01 X 66905872 66905872 G A AR Missense_Mutation p.A597T 0.08 deleterious(0) probably_damaging(0.991) TCGA-FF-8041-01 X 69424867 69424867 G A DGAT2L6 Missense_Mutation p.A309T 0.16 tolerated(0.48) benign(0.021) TCGA-FF-8041-01 X 75395309 75395309 T C PBDC1 Missense_Mutation p.L53P 0.29 deleterious(0) probably_damaging(0.999) TCGA-FF-8041-01 X 75648638 75648638 G A MAGEE1 Silent p.L105L 0.14 TCGA-FF-8041-01 X 92928124 92928124 G T NAP1L3 Missense_Mutation p.S60R 0.20 tolerated(0.06) benign(0.307) TCGA-FF-8042-01 10 106907486 106907486 A C SORCS3 Missense_Mutation p.T472P 0.44 deleterious(0.03) probably_damaging(0.979) TCGA-FF-8042-01 10 118969290 118969290 C T KCNK18 Missense_Mutation p.P212L 0.41 tolerated(0.36) benign(0.019) TCGA-FF-8042-01 10 1568959 1568959 C T ADARB2 Intron 0.43 TCGA-FF-8042-01 10 28412969 28412969 T C MPP7 Missense_Mutation p.I202M 0.37 tolerated(0.22) probably_damaging(0.975) TCGA-FF-8042-01 10 55568916 55568916 A G PCDH15 Missense_Mutation p.S566P 0.36 tolerated_low_confidence(0.24) unknown(0) TCGA-FF-8042-01 10 73053316 73053316 C T UNC5B Nonsense_Mutation p.Q643* 0.52 TCGA-FF-8042-01 10 87615870 87615870 C T GRID1 Nonsense_Mutation p.W343* 0.42 TCGA-FF-8042-01 10 88988038 88988038 C T NUTM2A Missense_Mutation p.P134L 0.40 tolerated(0.06) benign(0.095) TCGA-FF-8042-01 11 102248352 102248352 C G BIRC2 Missense_Mutation p.Q498E 0.33 tolerated(0.09) benign(0.026) TCGA-FF-8042-01 11 118550316 118550316 C T TREH Silent p.E7E 0.13 TCGA-FF-8042-01 11 123753810 123753810 A C TMEM225 3'UTR 0.24 TCGA-FF-8042-01 11 124740064 124740064 G T ROBO3 Missense_Mutation p.R257L 0.50 deleterious(0) probably_damaging(0.996) TCGA-FF-8042-01 11 129801147 129801147 G A PRDM10 Silent p.L432L 0.30 TCGA-FF-8042-01 11 4967768 4967768 T G OR51A4 Missense_Mutation p.K188T 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-FF-8042-01 11 4976381 4976381 T G OR51A2 Missense_Mutation p.K188T 0.46 deleterious(0.02) possibly_damaging(0.841) TCGA-FF-8042-01 11 49831630 49831630 T G RP11-707M1.1 RNA 0.44 TCGA-FF-8042-01 11 5013536 5013536 G A MMP26 3'UTR 0.33 TCGA-FF-8042-01 11 51516008 51516008 A G OR4C46 Missense_Mutation p.T243A 0.39 tolerated_low_confidence(0.12) benign(0.174) TCGA-FF-8042-01 11 56043714 56043714 T G OR5T1 Silent p.S200S 0.35 TCGA-FF-8042-01 11 5799770 5799770 T G OR52N5 Missense_Mutation p.H32P 0.38 deleterious(0) possibly_damaging(0.905) TCGA-FF-8042-01 11 58275383 58275383 G A OR5B21 Missense_Mutation p.L66F 0.43 tolerated_low_confidence(0.14) benign(0) TCGA-FF-8042-01 11 608546 608546 G A PHRF1 Silent p.S1029S 0.41 TCGA-FF-8042-01 11 61205178 61205178 C T SDHAF2 Missense_Mutation p.P40S 0.45 tolerated(0.1) benign(0.09) TCGA-FF-8042-01 11 61495668 61495668 G A DAGLA Missense_Mutation p.R227Q 0.40 tolerated(0.06) benign(0.066) TCGA-FF-8042-01 11 62564687 62564687 G C NXF1 Missense_Mutation p.N382K 0.32 tolerated(0.49) benign(0) TCGA-FF-8042-01 11 64085702 64085702 C G PRDX5 Silent p.G5G 0.39 TCGA-FF-8042-01 11 65479686 65479686 C G KAT5 5'UTR 0.38 TCGA-FF-8042-01 11 6643761 6643761 T A DCHS1 Missense_Mutation p.E3049V 0.44 deleterious(0) probably_damaging(0.999) TCGA-FF-8042-01 11 6646497 6646497 C T DCHS1 Missense_Mutation p.A2360T 0.47 deleterious(0.02) probably_damaging(1) TCGA-FF-8042-01 11 66743072 66743072 G C C11orf86 Missense_Mutation p.R80P 0.52 tolerated(0.11) probably_damaging(0.933) TCGA-FF-8042-01 11 67286417 67286417 A G CABP2 3'Flank 0.11 TCGA-FF-8042-01 11 67833918 67833918 C T CHKA Missense_Mutation p.E332K 0.34 deleterious(0) probably_damaging(0.981) TCGA-FF-8042-01 11 69625301 69625301 G C FGF3 Silent p.R164R 0.40 TCGA-FF-8042-01 11 70803510 70803510 A C SHANK2 Silent p.T290T 0.33 TCGA-FF-8042-01 11 726366 726366 G A EPS8L2 Missense_Mutation p.A606T 0.46 tolerated(0.37) benign(0.002) TCGA-FF-8042-01 11 75277624 75277624 C T SERPINH1 Missense_Mutation p.S77L 0.36 deleterious(0.01) possibly_damaging(0.713) TCGA-FF-8042-01 11 801002 801002 C T PIDD Silent p.Q583Q 0.42 TCGA-FF-8042-01 12 105150950 105150950 A C CHST11 Missense_Mutation p.K143T 0.41 tolerated(0.18) benign(0.099) TCGA-FF-8042-01 12 113629195 113629195 G A RITA1 Missense_Mutation p.R128Q 0.31 tolerated(0.29) benign(0.033) TCGA-FF-8042-01 12 120125853 120125853 C T CIT 3'UTR 0.62 TCGA-FF-8042-01 12 123351753 123351753 A G VPS37B Silent p.S256S 0.06 TCGA-FF-8042-01 12 123465786 123465786 A G ARL6IP4 Missense_Mutation p.R157G 0.33 deleterious_low_confidence(0.02) benign(0.415) TCGA-FF-8042-01 12 130926675 130926675 C T RIMBP2 Missense_Mutation p.V391M 0.40 tolerated(0.11) possibly_damaging(0.863) TCGA-FF-8042-01 12 13716441 13716441 G A GRIN2B Missense_Mutation p.A1244V 0.32 deleterious(0.03) benign(0.007) TCGA-FF-8042-01 12 29604411 29604411 A G OVCH1 Silent p.S874S 0.27 TCGA-FF-8042-01 12 34179242 34179242 G A ALG10 Missense_Mutation p.G272S 0.39 tolerated(0.06) possibly_damaging(0.792) TCGA-FF-8042-01 12 4919954 4919957 CTCA - KCNA6 Frame_Shift_Del p.L251Vfs*45 0.41 TCGA-FF-8042-01 12 49415920 49415920 G T KMT2D Missense_Mutation p.S5476Y 0.33 unknown(0) TCGA-FF-8042-01 12 49415922 49415922 A T KMT2D Missense_Mutation p.H5475Q 0.34 unknown(0) TCGA-FF-8042-01 12 49441815 49441816 - C KMT2D Frame_Shift_Ins p.A1390Gfs*42 0.30 TCGA-FF-8042-01 12 51237782 51237782 G A TMPRSS12 Silent p.R115R 0.46 TCGA-FF-8042-01 12 6702746 6702746 G C CHD4 Missense_Mutation p.L784V 0.31 deleterious(0) possibly_damaging(0.874) TCGA-FF-8042-01 12 81101689 81101689 C T MYF6 Missense_Mutation p.A64V 0.44 deleterious(0.02) probably_damaging(0.995) TCGA-FF-8042-01 12 9006740 9006740 T C A2ML1 Silent p.T869T 0.35 TCGA-FF-8042-01 12 97137268 97137268 C G C12orf55 Missense_Mutation p.F2436L 0.44 tolerated(0.77) benign(0) TCGA-FF-8042-01 12 97137288 97137288 T G C12orf55 Missense_Mutation p.L2443R 0.44 deleterious(0) benign(0.354) TCGA-FF-8042-01 13 23908805 23908805 A G SACS Silent p.V3070V 0.37 TCGA-FF-8042-01 13 24436455 24436455 T C MIPEP Missense_Mutation p.N347D 0.35 tolerated(0.06) benign(0.081) TCGA-FF-8042-01 13 37271789 37271789 G A SERTM1 3'UTR 0.42 TCGA-FF-8042-01 13 43987001 43987001 A G ENOX1 Missense_Mutation p.L17P 0.36 tolerated_low_confidence(0.16) possibly_damaging(0.766) TCGA-FF-8042-01 13 93879792 93879792 G T GPC6 Missense_Mutation p.R28L 0.37 deleterious(0.04) benign(0.036) TCGA-FF-8042-01 13 93879793 93879793 G T GPC6 Silent p.R28R 0.38 TCGA-FF-8042-01 14 102973224 102973224 T A ANKRD9 3'UTR 0.41 TCGA-FF-8042-01 14 105418968 105418968 G C AHNAK2 Silent p.G940G 0.37 TCGA-FF-8042-01 14 106330024 106330024 C G IGHJ5 Silent p.%3D 0.33 TCGA-FF-8042-01 14 106829870 106829870 C T IGHV4-34 Silent p.Q31Q 0.38 TCGA-FF-8042-01 14 106829875 106829875 G A IGHV4-34 Silent p.L30L 0.35 TCGA-FF-8042-01 14 106829988 106829988 C T IGHV4-34 Missense_Mutation p.A20T 0.42 tolerated(0.05) possibly_damaging(0.588) TCGA-FF-8042-01 14 31066658 31066658 T G G2E3 Missense_Mutation p.F187L 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-FF-8042-01 14 38680338 38680338 G A SSTR1 3'UTR 0.23 TCGA-FF-8042-01 14 42356853 42356853 T G LRFN5 Missense_Mutation p.L342R 0.29 deleterious(0.02) probably_damaging(1) TCGA-FF-8042-01 14 47530650 47530650 A C MDGA2 Missense_Mutation p.F443V 0.23 deleterious(0.05) benign(0.228) TCGA-FF-8042-01 14 51378473 51378473 G A PYGL Silent p.N648N 0.26 TCGA-FF-8042-01 14 70177862 70177862 C T KIAA0247 3'UTR 0.18 TCGA-FF-8042-01 14 72976974 72976974 T C RGS6 Missense_Mutation p.S360P 0.34 tolerated(0.12) probably_damaging(0.989) TCGA-FF-8042-01 14 73637595 73637595 C T PSEN1 Missense_Mutation p.R60W 0.29 deleterious(0.01) benign(0.209) TCGA-FF-8042-01 14 79175759 79175759 A G NRXN3 Missense_Mutation p.D101G 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-FF-8042-01 14 86087761 86087761 T C FLRT2 5'UTR 0.44 TCGA-FF-8042-01 14 88951488 88951488 T C PTPN21 Missense_Mutation p.Y337C 0.37 tolerated(0.1) possibly_damaging(0.886) TCGA-FF-8042-01 14 96706639 96706639 G A BDKRB2 Intron 0.44 TCGA-FF-8042-01 15 27777873 27777873 T G GABRG3 Missense_Mutation p.F417C 0.36 deleterious(0) possibly_damaging(0.868) TCGA-FF-8042-01 15 28999655 28999655 C T WHAMMP2 RNA 0.42 TCGA-FF-8042-01 15 34396115 34396115 C A PGBD4 Missense_Mutation p.H461Q 0.31 tolerated(0.49) benign(0.005) TCGA-FF-8042-01 15 48703210 48703210 T G FBN1 Missense_Mutation p.K2865Q 0.43 benign(0.122) TCGA-FF-8042-01 15 54792317 54792317 G C UNC13C Missense_Mutation p.E1701Q 0.36 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-FF-8042-01 15 72103180 72103180 G T NR2E3 RNA 0.24 TCGA-FF-8042-01 15 73616204 73616204 G T HCN4 Missense_Mutation p.Q744K 0.09 deleterious(0.03) unknown(0) TCGA-FF-8042-01 15 77906709 77906709 C G LINGO1 Missense_Mutation p.V514L 0.30 deleterious(0.02) benign(0.348) TCGA-FF-8042-01 15 87089240 87089240 G T AGBL1 Missense_Mutation p.C852F 0.26 deleterious(0) probably_damaging(1) TCGA-FF-8042-01 15 88727487 88727487 C T NTRK3 Missense_Mutation p.D98N 0.21 tolerated(0.06) probably_damaging(0.909) TCGA-FF-8042-01 15 90770838 90770838 G A SEMA4B Missense_Mutation p.A580T 0.21 tolerated(0.64) benign(0.001) TCGA-FF-8042-01 15 99511839 99511839 C T PGPEP1L Silent p.G153G 0.26 TCGA-FF-8042-01 16 10274133 10274133 C T GRIN2A Missense_Mutation p.V46M 0.38 deleterious(0.04) benign(0.003) TCGA-FF-8042-01 16 29825287 29825287 T G PRRT2 Intron 0.43 TCGA-FF-8042-01 16 66426408 66426408 G A CDH5 Intron 0.38 TCGA-FF-8042-01 16 76350339 76350339 T G CNTNAP4 Missense_Mutation p.L14V 0.42 deleterious(0.01) probably_damaging(0.985) TCGA-FF-8042-01 17 17699094 17699095 CT - RAI1 Frame_Shift_Del p.L946Vfs*7 0.35 TCGA-FF-8042-01 17 17701758 17701758 C T RAI1 Silent p.T1832T 0.45 TCGA-FF-8042-01 17 19470152 19470152 C T SLC47A1 Missense_Mutation p.H386Y 0.39 deleterious(0.02) probably_damaging(0.985) TCGA-FF-8042-01 17 34912947 34912947 G T GGNBP2 Missense_Mutation p.D67Y 0.33 deleterious(0) benign(0.192) TCGA-FF-8042-01 17 35307529 35307529 T C AATF Missense_Mutation p.V36A 0.39 deleterious(0) probably_damaging(0.997) TCGA-FF-8042-01 17 38325589 38325589 G A CASC3 Missense_Mutation p.V660I 0.34 deleterious(0) probably_damaging(0.99) TCGA-FF-8042-01 17 39019783 39019783 C T KRT12 Missense_Mutation p.R350H 0.35 deleterious(0) probably_damaging(0.991) TCGA-FF-8042-01 17 6367558 6367558 G C PITPNM3 Silent p.R696R 0.34 TCGA-FF-8042-01 17 65186460 65186460 T C HELZ Missense_Mutation p.Q190R 0.39 tolerated(0.1) benign(0.198) TCGA-FF-8042-01 17 72287205 72287205 C T DNAI2 Silent p.L219L 0.47 TCGA-FF-8042-01 17 73132201 73132201 C T HN1 Missense_Mutation p.V148I 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.621) TCGA-FF-8042-01 17 73945827 73945827 T G ACOX1 Missense_Mutation p.T484P 0.40 deleterious(0.02) benign(0.302) TCGA-FF-8042-01 18 14787093 14787093 T A ANKRD30B Missense_Mutation p.D576E 0.15 deleterious(0.03) probably_damaging(0.98) TCGA-FF-8042-01 18 21197729 21197729 C T ANKRD29 Silent p.L230L 0.14 TCGA-FF-8042-01 18 22669489 22669489 T G ZNF521 Missense_Mutation p.E1282D 0.15 tolerated(0.45) benign(0.008) TCGA-FF-8042-01 18 22804688 22804688 T G ZNF521 Missense_Mutation p.Y1065S 0.17 deleterious(0) benign(0) TCGA-FF-8042-01 18 30257201 30257201 T G KLHL14 Missense_Mutation p.S561R 0.20 deleterious(0) possibly_damaging(0.508) TCGA-FF-8042-01 18 50432601 50432601 C T DCC Silent p.S200S 0.17 TCGA-FF-8042-01 18 56057939 56057939 C T NEDD4L Missense_Mutation p.S906L 0.21 deleterious(0) possibly_damaging(0.866) TCGA-FF-8042-01 18 59166652 59166652 C A CDH20 Missense_Mutation p.D160E 0.11 deleterious(0.01) probably_damaging(0.966) TCGA-FF-8042-01 18 61562516 61562516 G T SERPINB2 Missense_Mutation p.V63L 0.19 tolerated(0.3) benign(0.056) TCGA-FF-8042-01 18 65180354 65180354 T G DSEL Missense_Mutation p.N508H 0.14 deleterious(0) probably_damaging(1) TCGA-FF-8042-01 18 66721311 66721311 G A CCDC102B Silent p.L493L 0.36 TCGA-FF-8042-01 18 71749236 71749236 T A FBXO15 Missense_Mutation p.N397Y 0.16 deleterious(0.01) possibly_damaging(0.804) TCGA-FF-8042-01 19 10748564 10748564 G A SLC44A2 Silent p.S576S 0.50 TCGA-FF-8042-01 19 12542646 12542646 C T ZNF443 Missense_Mutation p.G114S 0.45 tolerated(0.51) benign(0.056) TCGA-FF-8042-01 19 13264330 13264330 C T IER2 Silent p.C110C 0.54 TCGA-FF-8042-01 19 13915887 13915887 A C ZSWIM4 Missense_Mutation p.T213P 0.44 deleterious(0.04) possibly_damaging(0.702) TCGA-FF-8042-01 19 17039035 17039035 C T CPAMD8 Missense_Mutation p.G1099S 0.43 deleterious(0) probably_damaging(1) TCGA-FF-8042-01 19 37129817 37129817 G A ZNF461 Missense_Mutation p.A477V 0.36 deleterious(0.04) possibly_damaging(0.698) TCGA-FF-8042-01 19 39948337 39948337 C T SUPT5H Silent p.D88D 0.41 TCGA-FF-8042-01 19 41066402 41066402 G A SPTBN4 Intron 0.43 TCGA-FF-8042-01 19 4318387 4318387 C T FSD1 Missense_Mutation p.R282W 0.37 deleterious(0) possibly_damaging(0.839) TCGA-FF-8042-01 19 45594398 45594398 C T GEMIN7 3'UTR 0.39 TCGA-FF-8042-01 19 51530811 51530811 T C KLK11 5'UTR 0.14 TCGA-FF-8042-01 19 54377236 54377236 C T MYADM Silent p.Y151Y 0.41 TCGA-FF-8042-01 19 54646891 54646891 G T CNOT3 Missense_Mutation p.G21V 0.33 deleterious(0) probably_damaging(1) TCGA-FF-8042-01 19 8601222 8601222 C T MYO1F Missense_Mutation p.V653I 0.43 tolerated(0.23) benign(0.055) TCGA-FF-8042-01 1 103449740 103449740 A G COL11A1 Missense_Mutation p.L837P 0.45 unknown(0) TCGA-FF-8042-01 1 104116508 104116508 A T AMY2B Missense_Mutation p.N231I 0.41 deleterious(0) benign(0.386) TCGA-FF-8042-01 1 115276720 115276720 C A CSDE1 Nonsense_Mutation p.E247* 0.45 TCGA-FF-8042-01 1 115487569 115487569 T G SYCP1 Missense_Mutation p.I707R 0.36 deleterious(0) probably_damaging(1) TCGA-FF-8042-01 1 11917602 11917602 A G NPPB 3'UTR 0.83 TCGA-FF-8042-01 1 12785877 12785877 C T AADACL3 Missense_Mutation p.L323F 0.39 tolerated(0.06) benign(0.269) TCGA-FF-8042-01 1 152284337 152284337 G C FLG Missense_Mutation p.H1009D 0.36 possibly_damaging(0.908) TCGA-FF-8042-01 1 156047300 156047300 A G MEX3A Missense_Mutation p.S210P 0.05 tolerated(0.17) benign(0.025) TCGA-FF-8042-01 1 156883019 156883019 A T PEAR1 Missense_Mutation p.N819I 0.46 deleterious(0) probably_damaging(0.999) TCGA-FF-8042-01 1 160461146 160461146 T C SLAMF6 Missense_Mutation p.S139G 0.40 deleterious(0.03) possibly_damaging(0.682) TCGA-FF-8042-01 1 167097477 167097477 C T DUSP27 Missense_Mutation p.P1037S 0.47 deleterious(0) probably_damaging(0.957) TCGA-FF-8042-01 1 16907377 16907377 C A NBPF1 Missense_Mutation p.S485I 0.04 tolerated(0.4) possibly_damaging(0.583) TCGA-FF-8042-01 1 172017815 172017815 G A DNM3 Silent p.L420L 0.38 TCGA-FF-8042-01 1 201196197 201196197 C T IGFN1 Silent p.P3658P 0.06 TCGA-FF-8042-01 1 203134499 203134499 C T ADORA1 Missense_Mutation p.A151V 0.47 tolerated(0.21) benign(0.002) TCGA-FF-8042-01 1 205743977 205743977 G C RAB7L1 Nonsense_Mutation p.Y36* 0.35 TCGA-FF-8042-01 1 214178516 214178516 A C PROX1 Missense_Mutation p.E578D 0.32 deleterious(0.01) possibly_damaging(0.611) TCGA-FF-8042-01 1 236714171 236714171 C T HEATR1 3'UTR 0.30 TCGA-FF-8042-01 1 23689381 23689381 G T ZNF436 Missense_Mutation p.P165H 0.39 deleterious(0) probably_damaging(0.995) TCGA-FF-8042-01 1 237580416 237580416 A C RYR2 Silent p.R281R 0.37 TCGA-FF-8042-01 1 248039254 248039254 C T TRIM58 Silent p.A308A 0.70 TCGA-FF-8042-01 1 248344182 248344182 A G OR2M2 Missense_Mutation p.R299G 0.68 tolerated(1) benign(0.029) TCGA-FF-8042-01 1 248366819 248366819 C T OR2M3 Silent p.I150I 0.64 TCGA-FF-8042-01 1 35847205 35847205 T G ZMYM4 Missense_Mutation p.F472C 0.25 deleterious(0) possibly_damaging(0.841) TCGA-FF-8042-01 1 35847247 35847247 G T ZMYM4 Missense_Mutation p.C486F 0.20 deleterious(0) probably_damaging(0.939) TCGA-FF-8042-01 1 45793485 45793485 G A HPDL Missense_Mutation p.G222D 0.37 tolerated(0.2) benign(0.005) TCGA-FF-8042-01 1 46080832 46080832 C T NASP Missense_Mutation p.A605V 0.37 deleterious(0.05) possibly_damaging(0.72) TCGA-FF-8042-01 1 52870351 52870351 A G PRPF38A 5'UTR 0.48 TCGA-FF-8042-01 1 53569135 53569135 G T SLC1A7 Missense_Mutation p.H194N 0.38 tolerated(0.55) benign(0.001) TCGA-FF-8042-01 1 53569140 53569140 C T SLC1A7 Missense_Mutation p.G192D 0.39 tolerated(0.31) benign(0.004) TCGA-FF-8042-01 1 91180266 91180266 G C BARHL2 Missense_Mutation p.P225A 0.36 deleterious(0.04) unknown(0) TCGA-FF-8042-01 1 9670573 9670573 C T TMEM201 Missense_Mutation p.S492F 0.36 deleterious(0.03) possibly_damaging(0.663) TCGA-FF-8042-01 20 31023636 31023636 G - ASXL1 Frame_Shift_Del p.A1041Pfs*6 0.23 TCGA-FF-8042-01 20 33580902 33580902 C G MYH7B Intron 0.34 TCGA-FF-8042-01 20 35559188 35559188 C A SAMHD1 Missense_Mutation p.Q200H 0.46 deleterious(0) possibly_damaging(0.897) TCGA-FF-8042-01 20 469352 469352 A C CSNK2A1 Nonsense_Mutation p.L265* 0.49 TCGA-FF-8042-01 20 5559162 5559162 A C GPCPD1 Nonsense_Mutation p.L190* 0.45 TCGA-FF-8042-01 20 60885315 60885315 G A LAMA5 Silent p.P3551P 0.37 TCGA-FF-8042-01 21 33371236 33371236 C T HUNK Silent p.N628N 0.32 TCGA-FF-8042-01 21 40194761 40194761 C T ETS2 Missense_Mutation p.T453M 0.54 tolerated(0.08) possibly_damaging(0.819) TCGA-FF-8042-01 21 41446993 41446993 C T DSCAM Missense_Mutation p.R1620Q 0.41 tolerated(0.08) probably_damaging(0.98) TCGA-FF-8042-01 21 42817373 42817373 A G MX1 Splice_Site p.X337_splice 0.35 TCGA-FF-8042-01 21 47704722 47704723 - C MCM3AP Frame_Shift_Ins p.A160Gfs*2 0.32 TCGA-FF-8042-01 22 18463701 18463701 C T MICAL3 Intron 0.53 TCGA-FF-8042-01 22 22677036 22677036 G A IGLV1-51 Missense_Mutation p.V22M 0.16 deleterious(0.03) benign(0.362) TCGA-FF-8042-01 22 22677048 22677048 C T IGLV1-51 Missense_Mutation p.P26S 0.18 deleterious(0.02) benign(0.446) TCGA-FF-8042-01 22 22677049 22677049 C T IGLV1-51 Missense_Mutation p.P26L 0.18 deleterious(0.02) benign(0.388) TCGA-FF-8042-01 22 23101437 23101437 G A IGLV2-14 Missense_Mutation p.G31R 0.12 deleterious_low_confidence(0.02) benign(0.331) TCGA-FF-8042-01 22 23243264 23243264 C T IGLC2 Missense_Mutation p.A37V 0.52 benign(0.002) TCGA-FF-8042-01 22 23243590 23248948 22:23243590-23248948 - IGLJ3 large deletion 0.11 TCGA-FF-8042-01 22 39263079 39263079 C T CBX6 Missense_Mutation p.R125H 0.32 deleterious(0.01) probably_damaging(0.964) TCGA-FF-8042-01 22 50304167 50304167 G C ALG12 Silent p.T128T 0.30 TCGA-FF-8042-01 22 50637425 50637425 C T TRABD 3'UTR 0.28 TCGA-FF-8042-01 2 116257116 116257116 G T DPP10 Missense_Mutation p.G105V 0.37 deleterious(0) probably_damaging(0.999) TCGA-FF-8042-01 2 120725435 120725435 G A PTPN4 Missense_Mutation p.V861I 0.38 deleterious(0.01) benign(0.34) TCGA-FF-8042-01 2 141079638 141079638 A G LRP1B Silent p.D4178D 0.41 TCGA-FF-8042-01 2 153463872 153463872 G A FMNL2 Missense_Mutation p.R299H 0.29 probably_damaging(0.996) TCGA-FF-8042-01 2 160599591 160599591 C G MARCH7 Missense_Mutation p.S58C 0.43 tolerated(0.08) benign(0.011) TCGA-FF-8042-01 2 171822689 171822689 G A GORASP2 3'UTR 0.48 TCGA-FF-8042-01 2 179428230 179428233 TCTG - TTN Frame_Shift_Del p.F27542Lfs*37 0.44 TCGA-FF-8042-01 2 179440859 179440859 C G TTN Missense_Mutation p.E23334Q 0.38 TCGA-FF-8042-01 2 189405948 189405948 G A GULP1 Missense_Mutation p.C101Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-FF-8042-01 2 189927788 189927788 C T COL5A2 Missense_Mutation p.G624D 0.12 probably_damaging(1) TCGA-FF-8042-01 2 192700876 192700876 T G SDPR Missense_Mutation p.I351L 0.38 tolerated(0.23) benign(0.007) TCGA-FF-8042-01 2 206110509 206110509 T C PARD3B Silent p.D654D 0.35 TCGA-FF-8042-01 2 207012503 207012503 C G NDUFS1 Missense_Mutation p.D146H 0.43 deleterious(0) probably_damaging(1) TCGA-FF-8042-01 2 208795754 208795754 G T PLEKHM3 Missense_Mutation p.H594Q 0.44 deleterious(0) possibly_damaging(0.786) TCGA-FF-8042-01 2 213872764 213872764 T C IKZF2 Missense_Mutation p.M301V 0.35 tolerated(0.59) benign(0.001) TCGA-FF-8042-01 2 228882763 228882763 G A SPHKAP Missense_Mutation p.T936M 0.42 deleterious(0.04) possibly_damaging(0.616) TCGA-FF-8042-01 2 234638243 234638243 C T UGT1A3 Silent p.C157C 0.40 TCGA-FF-8042-01 2 238688143 238688143 G A LRRFIP1 Missense_Mutation p.A631T 0.43 deleterious(0.01) possibly_damaging(0.539) TCGA-FF-8042-01 2 27163001 27163001 C T DPYSL5 Silent p.G350G 0.32 TCGA-FF-8042-01 2 29225519 29225519 C T FAM179A Missense_Mutation p.P182L 0.34 tolerated(0.07) possibly_damaging(0.728) TCGA-FF-8042-01 2 85577909 85577909 C A RETSAT Silent p.L197L 0.36 TCGA-FF-8042-01 2 89161065 89161091 AAAAGTGTACACACAATGGTTCCTCTT - IGKJ2 Missense_Mutation 0.17 TCGA-FF-8042-01 2 89976337 89976337 A T IGKV2D-30 Missense_Mutation p.R70W 0.35 deleterious(0.03) possibly_damaging(0.761) TCGA-FF-8042-01 2 97779365 97779366 - T ANKRD36 5'UTR 0.43 TCGA-FF-8042-01 3 100039768 100039768 G C TBC1D23 Missense_Mutation p.K657N 0.33 deleterious(0) probably_damaging(0.959) TCGA-FF-8042-01 3 10251272 10251272 G A IRAK2 Splice_Site p.X142_splice 0.20 TCGA-FF-8042-01 3 114069130 114069130 C T ZBTB20 Missense_Mutation p.V599I 0.26 tolerated(0.96) probably_damaging(0.939) TCGA-FF-8042-01 3 124385389 124385389 C T KALRN Missense_Mutation p.R238C 0.27 deleterious(0) probably_damaging(0.998) TCGA-FF-8042-01 3 12475443 12475443 C A PPARG Missense_Mutation p.D439E 0.21 tolerated(1) benign(0.007) TCGA-FF-8042-01 3 125877319 125877319 G A ALDH1L1 Silent p.A107A 0.28 TCGA-FF-8042-01 3 126070934 126070934 A C KLF15 Missense_Mutation p.F278V 0.24 deleterious(0) probably_damaging(0.979) TCGA-FF-8042-01 3 12610409 12610409 A G MKRN2 Missense_Mutation p.Q21R 0.23 tolerated(0.45) benign(0.001) TCGA-FF-8042-01 3 126142198 126142198 G A CCDC37 Silent p.E371E 0.29 TCGA-FF-8042-01 3 12627284 12627284 C T RAF1 Missense_Mutation p.E478K 0.20 deleterious(0) possibly_damaging(0.879) TCGA-FF-8042-01 3 184290807 184290807 G A EPHB3 Silent p.S233S 0.33 TCGA-FF-8042-01 3 184616396 184616396 T C VPS8 Missense_Mutation p.I683T 0.27 deleterious(0) possibly_damaging(0.848) TCGA-FF-8042-01 3 193051546 193051546 T C ATP13A5 Missense_Mutation p.Y422C 0.26 deleterious(0.02) probably_damaging(0.928) TCGA-FF-8042-01 3 195605200 195605200 G A TNK2 Missense_Mutation p.R457W 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-FF-8042-01 3 24231565 24231565 C T THRB Missense_Mutation p.G95R 0.25 deleterious(0) probably_damaging(0.988) TCGA-FF-8042-01 3 27424644 27424644 C A SLC4A7 Missense_Mutation p.S1188I 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-FF-8042-01 3 35758809 35758809 A T ARPP21 Missense_Mutation p.N285Y 0.30 tolerated(0.11) benign(0.026) TCGA-FF-8042-01 3 39174704 39174704 C A TTC21A Silent p.V915V 0.31 TCGA-FF-8042-01 3 42264607 42264607 G A TRAK1 Missense_Mutation p.R747Q 0.25 tolerated(0.15) benign(0.026) TCGA-FF-8042-01 3 43345043 43345043 C T SNRK Silent p.A116A 0.38 TCGA-FF-8042-01 3 44777341 44777341 T G ZNF501 3'UTR 0.33 TCGA-FF-8042-01 3 46307515 46307515 T G CCR3 Missense_Mutation p.I310S 0.30 deleterious(0) probably_damaging(0.94) TCGA-FF-8042-01 3 46400707 46400707 T C CCR2 Intron 0.24 TCGA-FF-8042-01 3 49692749 49692749 C T BSN Silent p.A1920A 0.25 TCGA-FF-8042-01 3 52398997 52398997 G A DNAH1 Missense_Mutation p.R1827H 0.36 benign(0.032) TCGA-FF-8042-01 3 63824125 63824125 G A THOC7 Missense_Mutation p.S63L 0.26 deleterious(0.01) benign(0.397) TCGA-FF-8042-01 3 64536662 64536662 C A ADAMTS9 Missense_Mutation p.G1592V 0.27 tolerated(0.06) benign(0.063) TCGA-FF-8042-01 3 7503365 7503365 G C GRM7 Missense_Mutation p.G491R 0.39 tolerated(0.45) possibly_damaging(0.635) TCGA-FF-8042-01 3 78667095 78667095 C T ROBO1 Silent p.T1324T 0.28 TCGA-FF-8042-01 3 97852040 97852040 A T OR5H1 Missense_Mutation p.T167S 0.18 deleterious(0.03) benign(0.19) TCGA-FF-8042-01 3 97852237 97852237 A G OR5H1 Silent p.K232K 0.13 TCGA-FF-8042-01 3 99514003 99514003 G A COL8A1 Missense_Mutation p.G420R 0.42 deleterious(0) unknown(0) TCGA-FF-8042-01 4 111482846 111482846 A G ENPEP 3'UTR 0.50 TCGA-FF-8042-01 4 120085498 120085498 T C MYOZ2 Missense_Mutation p.L170P 0.50 deleterious(0) probably_damaging(0.936) TCGA-FF-8042-01 4 126239318 126239318 G A FAT4 Silent p.Q584Q 0.42 TCGA-FF-8042-01 4 126408517 126408517 A G FAT4 Silent p.V4278V 0.31 TCGA-FF-8042-01 4 143003328 143003328 T G INPP4B Missense_Mutation p.K833T 0.42 deleterious(0) possibly_damaging(0.455) TCGA-FF-8042-01 4 148560224 148560224 G C PRMT10 Missense_Mutation p.R737G 0.34 deleterious(0.03) benign(0.233) TCGA-FF-8042-01 4 155158212 155158212 G A DCHS2 Missense_Mutation p.A2076V 0.39 deleterious(0.04) probably_damaging(0.953) TCGA-FF-8042-01 4 3129287 3129287 G A HTT Missense_Mutation p.E567K 0.41 possibly_damaging(0.814) TCGA-FF-8042-01 4 4199791 4199791 G A OTOP1 Missense_Mutation p.P257L 0.42 tolerated(0.07) benign(0.008) TCGA-FF-8042-01 4 44652108 44652108 A C YIPF7 Missense_Mutation p.L28V 0.45 tolerated_low_confidence(0.07) benign(0.017) TCGA-FF-8042-01 4 47427752 47427752 C T GABRB1 Missense_Mutation p.S381L 0.41 deleterious(0.04) benign(0.035) TCGA-FF-8042-01 4 47593309 47593309 T G ATP10D Missense_Mutation p.L1398V 0.38 tolerated_low_confidence(0.26) benign(0.001) TCGA-FF-8042-01 4 76507055 76507055 T G CDKL2 Missense_Mutation p.E490D 0.45 tolerated_low_confidence(0.19) benign(0.162) TCGA-FF-8042-01 4 80899206 80899206 T C ANTXR2 Silent p.K434K 0.36 TCGA-FF-8042-01 4 8224646 8224646 C T SH3TC1 Nonsense_Mutation p.Q398* 0.47 TCGA-FF-8042-01 4 88580612 88580612 A C DMP1 Missense_Mutation p.K55N 0.34 tolerated(0.07) possibly_damaging(0.684) TCGA-FF-8042-01 4 89427002 89427002 C T HERC5 Silent p.A1016A 0.40 TCGA-FF-8042-01 5 112173494 112173494 G A APC Missense_Mutation p.A735T 0.30 benign(0.347) TCGA-FF-8042-01 5 140264046 140264046 G A PCDHA13 Silent p.A731A 0.78 TCGA-FF-8042-01 5 140574381 140574381 G T PCDHB10 Missense_Mutation p.Q752H 0.50 deleterious_low_confidence(0.01) benign(0.142) TCGA-FF-8042-01 5 140741034 140741034 C T PCDHGB2 Silent p.D444D 0.64 TCGA-FF-8042-01 5 14359502 14359502 C G TRIO Missense_Mutation p.N751K 0.41 probably_damaging(0.968) TCGA-FF-8042-01 5 154179585 154179585 T C LARP1 Missense_Mutation p.S490P 0.81 tolerated(0.12) probably_damaging(0.999) TCGA-FF-8042-01 5 176079744 176079744 T C TSPAN17 Missense_Mutation p.F96L 0.79 deleterious(0) benign(0.399) TCGA-FF-8042-01 5 41381956 41381956 T G PLCXD3 Missense_Mutation p.S262R 0.35 tolerated(0.53) benign(0.099) TCGA-FF-8042-01 5 74655105 74655105 T G HMGCR Missense_Mutation p.I756M 0.46 tolerated(0.27) possibly_damaging(0.639) TCGA-FF-8042-01 5 7709382 7709382 A C ADCY2 Missense_Mutation p.K487T 0.45 deleterious(0.01) benign(0.027) TCGA-FF-8042-01 5 82834917 82834917 A C VCAN Missense_Mutation p.K2032T 0.42 tolerated(0.12) benign(0.021) TCGA-FF-8042-01 5 9066712 9066712 G T SEMA5A Missense_Mutation p.T707N 0.43 tolerated(0.72) probably_damaging(0.98) TCGA-FF-8042-01 6 123318714 123318714 T G CLVS2 5'UTR 0.42 TCGA-FF-8042-01 6 123759264 123759264 T C TRDN Missense_Mutation p.K332R 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.453) TCGA-FF-8042-01 6 132938981 132938981 A C TAAR2 Missense_Mutation p.F122V 0.24 tolerated(0.33) probably_damaging(0.999) TCGA-FF-8042-01 6 133836535 133836535 A G EYA4 Silent p.L526L 0.21 TCGA-FF-8042-01 6 154428709 154428709 T G OPRM1 Intron 0.28 TCGA-FF-8042-01 6 158504550 158504550 G A SYNJ2 Missense_Mutation p.M985I 0.31 tolerated(1) benign(0.002) TCGA-FF-8042-01 6 160208813 160208813 G A TCP1 Silent p.L81L 0.27 TCGA-FF-8042-01 6 165848819 165848819 C T PDE10A Missense_Mutation p.R148H 0.27 deleterious(0.05) possibly_damaging(0.602) TCGA-FF-8042-01 6 168369872 168369872 C T MLLT4 3'Flank 0.33 TCGA-FF-8042-01 6 169632988 169632988 G A THBS2 Silent p.D592D 0.23 TCGA-FF-8042-01 6 26124573 26124585 GCAACTACGCAGA - HIST1H2AC Frame_Shift_Del p.N39Gfs*14 0.21 TCGA-FF-8042-01 6 26156929 26156929 C G HIST1H1E Missense_Mutation p.S104C 0.23 deleterious(0) probably_damaging(0.944) TCGA-FF-8042-01 6 27792073 27792073 G A HIST1H4J Silent p.G57G 0.22 TCGA-FF-8042-01 6 28227333 28227333 G A NKAPL Missense_Mutation p.A62T 0.56 tolerated(0.3) unknown(0) TCGA-FF-8042-01 6 3273638 3273638 C T SLC22A23 Missense_Mutation p.G571E 0.30 deleterious(0.01) probably_damaging(1) TCGA-FF-8042-01 6 46658993 46658993 A C TDRD6 Missense_Mutation p.K1043T 0.29 deleterious(0) probably_damaging(0.948) TCGA-FF-8042-01 6 49423828 49423828 G A MUT Silent p.L292L 0.04 TCGA-FF-8042-01 6 55739470 55739470 G T BMP5 Missense_Mutation p.P65H 0.20 deleterious(0) probably_damaging(0.998) TCGA-FF-8042-01 6 55739666 55739666 T C BMP5 5'UTR 0.21 TCGA-FF-8042-01 6 76018589 76018589 G A FILIP1 Missense_Mutation p.R1154W 0.32 deleterious(0) probably_damaging(0.998) TCGA-FF-8042-01 6 8413768 8413768 A G SLC35B3 3'UTR 0.33 TCGA-FF-8042-01 7 11509616 11509616 G T THSD7A Missense_Mutation p.P753H 0.31 deleterious(0) probably_damaging(0.984) TCGA-FF-8042-01 7 122338257 122338257 A C RNF133 Missense_Mutation p.L239R 0.20 deleterious(0) possibly_damaging(0.694) TCGA-FF-8042-01 7 12397001 12397001 T G VWDE Missense_Mutation p.S1139R 0.28 tolerated(0.41) benign(0.003) TCGA-FF-8042-01 7 127253851 127253851 C T PAX4 Missense_Mutation p.R166Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-FF-8042-01 7 12730491 12730491 A G ARL4A 3'UTR 0.34 TCGA-FF-8042-01 7 127992592 127992592 G C PRRT4 Missense_Mutation p.P340A 0.26 tolerated(0.06) unknown(0) TCGA-FF-8042-01 7 128489252 128489252 G A FLNC Missense_Mutation p.G1649S 0.27 deleterious(0.05) probably_damaging(1) TCGA-FF-8042-01 7 137075823 137075823 G A DGKI 3'UTR 0.23 TCGA-FF-8042-01 7 143085943 143085943 C T ZYX Silent p.H466H 0.47 TCGA-FF-8042-01 7 144061112 144061112 T C ARHGEF5 Silent p.S450S 0.20 TCGA-FF-8042-01 7 1732937 1732937 C T AC074389.6 3'UTR 0.33 TCGA-FF-8042-01 7 2983885 2983885 C G CARD11 Missense_Mutation p.K215N 0.55 deleterious(0) possibly_damaging(0.464) TCGA-FF-8042-01 7 2987328 2987328 C G CARD11 Missense_Mutation p.S34T 0.28 tolerated(0.97) benign(0.1) TCGA-FF-8042-01 7 47876625 47876625 G A PKD1L1 Missense_Mutation p.P1946L 0.24 deleterious(0) probably_damaging(1) TCGA-FF-8042-01 7 56129454 56129454 C G CCT6A Missense_Mutation p.N454K 0.23 deleterious(0) probably_damaging(0.983) TCGA-FF-8042-01 7 82997329 82997329 T G SEMA3E Missense_Mutation p.K634T 0.21 tolerated(0.14) possibly_damaging(0.816) TCGA-FF-8042-01 7 92761145 92761145 T C SAMD9L Silent p.K1380K 0.07 TCGA-FF-8042-01 7 95034611 95034611 A C PON2 3'UTR 0.29 TCGA-FF-8042-01 7 96639340 96639340 A C DLX6 Missense_Mutation p.Q288P 0.21 tolerated(0.43) probably_damaging(0.929) TCGA-FF-8042-01 8 105405212 105405212 A C DPYS Missense_Mutation p.S415A 0.47 deleterious(0) possibly_damaging(0.594) TCGA-FF-8042-01 8 121823974 121823974 A C SNTB1 Missense_Mutation p.V37G 0.19 deleterious(0) probably_damaging(0.964) TCGA-FF-8042-01 8 144887138 144887138 G A SCRIB Missense_Mutation p.A906V 0.18 possibly_damaging(0.766) TCGA-FF-8042-01 8 24813297 24813297 C T CTD-2168K21.2 5'Flank 0.36 TCGA-FF-8042-01 8 68968164 68968164 A G PREX2 Missense_Mutation p.D398G 0.36 deleterious(0) probably_damaging(0.997) TCGA-FF-8042-01 8 76452251 76452251 A C HNF4G Missense_Mutation p.E8D 0.36 tolerated(0.46) benign(0.013) TCGA-FF-8042-01 8 87520902 87520902 G A RMDN1 5'UTR 0.54 TCGA-FF-8042-01 9 103090132 103090132 C T TEX10 Missense_Mutation p.A580T 0.41 tolerated(0.08) probably_damaging(0.995) TCGA-FF-8042-01 9 109689973 109689973 G T ZNF462 Silent p.T1260T 0.38 TCGA-FF-8042-01 9 131802778 131802778 G A FAM73B 5'UTR 0.37 TCGA-FF-8042-01 9 14307015 14307015 A C NFIB Missense_Mutation p.F179V 0.33 deleterious(0) probably_damaging(0.942) TCGA-FF-8042-01 9 35957229 35957229 G T OR2S2 Silent p.T289T 0.44 TCGA-FF-8042-01 9 36923482 36923482 C T PAX5 Splice_Site p.X261_splice 0.52 TCGA-FF-8042-01 9 73477843 73477843 C T TRPM3 Missense_Mutation p.G148D 0.39 tolerated(0.32) probably_damaging(0.999) TCGA-FF-8042-01 9 75355045 75355045 A C TMC1 Missense_Mutation p.K125Q 0.31 tolerated(0.17) benign(0.007) TCGA-FF-8042-01 9 77473596 77473596 T G TRPM6 Missense_Mutation p.K34N 0.62 deleterious(0) probably_damaging(0.938) TCGA-FF-8042-01 X 100497418 100497418 C T DRP2 Silent p.S311S 0.75 TCGA-FF-8042-01 X 112033851 112033851 G C AMOT Missense_Mutation p.L696V 0.61 unknown(0) TCGA-FF-8042-01 X 118797638 118797638 C A SEPT6 Nonsense_Mutation p.E50* 0.65 TCGA-FF-8042-01 X 128709154 128709154 T G OCRL Missense_Mutation p.F547C 0.81 deleterious(0.03) probably_damaging(0.987) TCGA-FF-8042-01 X 12994407 12994407 G C TMSB4X Missense_Mutation p.E9D 0.66 deleterious(0.02) possibly_damaging(0.847) TCGA-FF-8042-01 X 136648766 136648766 C T ZIC3 5'UTR 0.72 TCGA-FF-8042-01 X 140985325 140985325 C A MAGEC3 Intron 0.84 TCGA-FF-8042-01 X 155010873 155010873 G A SPRY3 3'UTR 0.74 TCGA-FF-8042-01 X 1584851 1584851 G C P2RY8 Missense_Mutation p.L201V 0.73 deleterious(0.02) possibly_damaging(0.56) TCGA-FF-8042-01 X 24229464 24229464 C T ZFX Nonsense_Mutation p.R797* 0.67 TCGA-FF-8042-01 X 3021805 3021805 G A ARSF Missense_Mutation p.G369R 0.67 deleterious(0.01) probably_damaging(0.994) TCGA-FF-8042-01 X 35821008 35821008 C T MAGEB16 Missense_Mutation p.T232M 0.62 tolerated(1) benign(0.107) TCGA-FF-8042-01 X 43661464 43661464 T C MAOB Missense_Mutation p.D144G 0.07 deleterious(0) probably_damaging(0.997) TCGA-FF-8042-01 X 64955264 64955264 G T MSN Nonsense_Mutation p.E311* 0.69 TCGA-FF-8042-01 X 70462020 70462020 C T ZMYM3 Missense_Mutation p.D1268N 0.78 deleterious(0.03) benign(0.003) TCGA-FF-8042-01 X 77529241 77529241 C T CYSLTR1 Translation_Start_Site p.M1? 0.70 tolerated(0.06) probably_damaging(0.937) TCGA-FF-8042-01 X 80064532 80064532 G A BRWD3 Nonsense_Mutation p.Q34* 0.68 TCGA-FF-8043-01 10 124909579 124909579 C T HMX2 Silent p.Y254Y 0.11 TCGA-FF-8043-01 10 129209114 129209114 G T DOCK1 Missense_Mutation p.V1431L 0.37 deleterious(0.03) benign(0.118) TCGA-FF-8043-01 10 131761680 131761680 G A EBF3 Missense_Mutation p.P81L 0.43 tolerated(0.06) probably_damaging(1) TCGA-FF-8043-01 10 71835546 71835546 C T H2AFY2 Silent p.G44G 0.45 TCGA-FF-8043-01 10 74183072 74183072 G A MICU1 Silent p.L331L 0.37 TCGA-FF-8043-01 10 95262925 95262925 A G CEP55 Missense_Mutation p.K80R 0.05 tolerated(0.09) benign(0.101) TCGA-FF-8043-01 11 123909644 123909656 TCCAGCCCTGGGG CCCAGCGCTTGGA OR10G7 Missense_Mutation p.APGLD18VQALG 0.23 TCGA-FF-8043-01 11 126075445 126075445 C T RPUSD4 Silent p.R238R 0.28 TCGA-FF-8043-01 11 1467077 1467077 C T BRSK2 Missense_Mutation p.T435M 0.50 deleterious(0) probably_damaging(1) TCGA-FF-8043-01 11 279844 279844 C T NLRP6 Silent p.L107L 0.17 TCGA-FF-8043-01 11 30921085 30921085 G A DCDC1 Intron 0.44 TCGA-FF-8043-01 11 32456397 32456397 G A WT1 Silent p.S165S 0.38 TCGA-FF-8043-01 11 67203559 67203559 C T PTPRCAP Missense_Mutation p.R89H 0.24 tolerated(0.11) probably_damaging(0.923) TCGA-FF-8043-01 11 89449083 89449083 C G TRIM77 Missense_Mutation p.P263A 0.38 deleterious(0.01) probably_damaging(0.986) TCGA-FF-8043-01 11 94583290 94583290 T G AMOTL1 Missense_Mutation p.L554V 0.24 tolerated(1) possibly_damaging(0.497) TCGA-FF-8043-01 12 112600163 112600163 G A HECTD4 3'UTR 0.31 TCGA-FF-8043-01 12 113496135 113496135 C T DTX1 Silent p.H46H 0.45 TCGA-FF-8043-01 12 113496197 113496197 C T DTX1 Missense_Mutation p.A67V 0.51 tolerated(0.16) benign(0.001) TCGA-FF-8043-01 12 122516989 122516989 T C MLXIP Missense_Mutation p.I77T 0.42 deleterious(0) probably_damaging(0.996) TCGA-FF-8043-01 12 14578150 14578150 A G ATF7IP Missense_Mutation p.E434G 0.38 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-FF-8043-01 12 48144895 48144895 C T RAPGEF3 Missense_Mutation p.E203K 0.21 deleterious(0.04) probably_damaging(0.98) TCGA-FF-8043-01 12 49445048 49445048 C AA KMT2D Frame_Shift_Ins p.S807Ffs*5 0.43 TCGA-FF-8043-01 12 53345343 53345343 G A KRT18 Missense_Mutation p.A246T 0.06 tolerated(0.27) benign(0.013) TCGA-FF-8043-01 12 54333307 54333307 A G HOXC13 Missense_Mutation p.D206G 0.20 deleterious(0) benign(0.341) TCGA-FF-8043-01 12 65857048 65857048 C T MSRB3 Silent p.A175A 0.27 TCGA-FF-8043-01 12 92538187 92538187 C T BTG1 Missense_Mutation p.C62Y 0.30 tolerated(0.47) benign(0.009) TCGA-FF-8043-01 12 92539174 92539180 CTCCTGC - BTG1 Frame_Shift_Del p.Q45Cfs*33 0.40 TCGA-FF-8043-01 12 95442844 95442844 C T NR2C1 Silent p.R377R 0.33 TCGA-FF-8043-01 13 24519929 24519929 C T ANKRD20A19P RNA 0.33 TCGA-FF-8043-01 13 98668008 98668008 A G IPO5 Silent p.E840E 0.06 TCGA-FF-8043-01 14 103394811 103394811 G A AMN Missense_Mutation p.G86S 0.43 tolerated(0.95) benign(0.011) TCGA-FF-8043-01 14 105418008 105418008 G T AHNAK2 Missense_Mutation p.D1260E 0.38 possibly_damaging(0.621) TCGA-FF-8043-01 14 106321869 106321869 C T IGHM Missense_Mutation p.G122D 0.81 tolerated(0.21) benign(0.018) TCGA-FF-8043-01 14 106330057 106330064 AGGGGTCG - IGHJ5 Frame_Shift_Del p.F3Lfs*? 0.37 TCGA-FF-8043-01 14 106330073 106330073 G T IGHD7-27 3'Flank 0.41 TCGA-FF-8043-01 14 106386949 106386949 C T KIAA0125 5'UTR 0.70 TCGA-FF-8043-01 14 106388166 106388166 C T KIAA0125 Missense_Mutation p.A92V 0.70 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-FF-8043-01 14 106388476 106388476 C T KIAA0125 Missense_Mutation p.A130V 0.74 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-FF-8043-01 14 106518459 106518459 G A IGHV3-7 Silent p.L98L 0.12 TCGA-FF-8043-01 14 106518684 106518684 G A IGHV3-7 Silent p.L23L 0.21 TCGA-FF-8043-01 14 21216536 21216536 C T EDDM3A 3'UTR 0.29 TCGA-FF-8043-01 14 77746416 77746416 C T POMT2 Missense_Mutation p.R578H 0.47 tolerated(0.54) benign(0.003) TCGA-FF-8043-01 15 35830516 35830516 C T DPH6 Missense_Mutation p.D91N 0.76 deleterious(0.01) probably_damaging(0.957) TCGA-FF-8043-01 15 45007896 45007896 T G B2M Missense_Mutation p.W115G 0.62 deleterious(0) probably_damaging(0.998) TCGA-FF-8043-01 15 79066981 79066981 G C ADAMTS7 Missense_Mutation p.P621A 0.54 tolerated(0.09) benign(0.1) TCGA-FF-8043-01 15 79220112 79220112 G C CTSH Missense_Mutation p.C214W 0.63 deleterious(0) probably_damaging(0.999) TCGA-FF-8043-01 16 11650529 11650529 G A LITAF Missense_Mutation p.P20S 0.13 deleterious(0) probably_damaging(0.998) TCGA-FF-8043-01 16 16162160 16162160 G A ABCC1 Splice_Site p.X608_splice 0.64 TCGA-FF-8043-01 16 19481009 19481009 C T TMC5 Silent p.A548A 0.31 TCGA-FF-8043-01 16 19556216 19556216 C T CCP110 Missense_Mutation p.A861V 0.39 deleterious(0.02) probably_damaging(0.986) TCGA-FF-8043-01 16 20327310 20327310 C T GP2 Missense_Mutation p.R493Q 0.38 tolerated(0.49) benign(0.009) TCGA-FF-8043-01 16 28618318 28618318 C G SULT1A1 Missense_Mutation p.E151D 0.64 tolerated(1) benign(0) TCGA-FF-8043-01 16 55517989 55517989 T A MMP2 Missense_Mutation p.F148I 0.06 deleterious(0) possibly_damaging(0.559) TCGA-FF-8043-01 16 66423379 66423379 G A CDH5 Silent p.L245L 0.59 TCGA-FF-8043-01 17 27010108 27010108 A G SUPT6H Missense_Mutation p.K626E 0.43 tolerated(0.06) benign(0.222) TCGA-FF-8043-01 17 39221736 39221736 G A KRTAP2-4 Missense_Mutation p.T121I 0.40 deleterious(0.04) unknown(0) TCGA-FF-8043-01 17 56356923 56356923 T G MPO Missense_Mutation p.Q170P 0.36 tolerated(0.2) benign(0.032) TCGA-FF-8043-01 17 56408645 56408645 G A BZRAP1 5'Flank 0.51 TCGA-FF-8043-01 17 73177275 73177275 G A SUMO2 Silent p.V10V 0.50 TCGA-FF-8043-01 17 7578419 7578419 C A TP53 Nonsense_Mutation p.E171* 0.89 TCGA-FF-8043-01 17 77709108 77709108 C T ENPP7 Silent p.T222T 0.47 TCGA-FF-8043-01 17 79532602 79532602 C T NPLOC4 Missense_Mutation p.R533Q 0.13 deleterious(0.04) possibly_damaging(0.623) TCGA-FF-8043-01 18 73000777 73000777 T G TSHZ1 3'UTR 0.29 TCGA-FF-8043-01 19 12243529 12243529 T C ZNF20 Missense_Mutation p.N491S 0.48 tolerated(1) benign(0.001) TCGA-FF-8043-01 19 12936596 12936596 C T RTBDN Missense_Mutation p.R237H 0.43 deleterious(0.01) unknown(0) TCGA-FF-8043-01 19 15905664 15905664 C T OR10H5 Missense_Mutation p.P269L 0.31 tolerated(0.9) benign(0) TCGA-FF-8043-01 19 2254194 2254194 G T JSRP1 Missense_Mutation p.A85D 0.40 deleterious(0) probably_damaging(0.958) TCGA-FF-8043-01 19 44605366 44605366 G T ZNF224 Nonsense_Mutation p.E75* 0.50 TCGA-FF-8043-01 19 50180522 50180523 - T PRMT1 5'Flank 0.48 TCGA-FF-8043-01 19 51020955 51020955 G A LRRC4B Missense_Mutation p.A672V 0.56 tolerated_low_confidence(0.17) benign(0.069) TCGA-FF-8043-01 19 6495416 6495416 G A TUBB4A Missense_Mutation p.A365V 0.53 tolerated_low_confidence(0.27) benign(0.018) TCGA-FF-8043-01 1 100547630 100547630 G A HIAT1 Silent p.L446L 0.43 TCGA-FF-8043-01 1 103484376 103484376 C T COL11A1 Missense_Mutation p.A450T 0.42 probably_damaging(0.981) TCGA-FF-8043-01 1 15616023 15616023 G A FHAD1 Silent p.P143P 0.40 TCGA-FF-8043-01 1 167095865 167095865 C - DUSP27 Frame_Shift_Del p.S499Rfs*78 0.35 TCGA-FF-8043-01 1 17033887 17033887 C G ESPNP RNA 0.16 TCGA-FF-8043-01 1 201779198 201779198 G A NAV1 Missense_Mutation p.R1509H 0.07 tolerated(0.09) possibly_damaging(0.562) TCGA-FF-8043-01 1 203053147 203053147 G A MYOG Missense_Mutation p.T189M 0.39 deleterious(0.04) benign(0.049) TCGA-FF-8043-01 1 21014404 21014404 G A KIF17 Missense_Mutation p.A472V 0.40 deleterious_low_confidence(0.03) benign(0.169) TCGA-FF-8043-01 1 215808002 215808002 G T USH2A Missense_Mutation p.S5032R 0.49 benign(0.028) TCGA-FF-8043-01 1 228522538 228522538 G A OBSCN Silent p.P6327P 0.77 TCGA-FF-8043-01 1 51253850 51253850 T A FAF1 Silent p.G63G 0.38 TCGA-FF-8043-01 1 52838903 52838903 G A ORC1 Missense_Mutation p.R846W 0.41 deleterious(0.03) probably_damaging(0.966) TCGA-FF-8043-01 1 60381646 60381646 C T CYP2J2 Missense_Mutation p.V113M 0.33 tolerated(0.28) benign(0.028) TCGA-FF-8043-01 1 71318536 71318536 A C PTGER3 Missense_Mutation p.F371V 0.34 tolerated(0.07) benign(0) TCGA-FF-8043-01 20 35772238 35772238 G A MROH8 Missense_Mutation p.T433I 0.09 tolerated(0.1) benign(0.011) TCGA-FF-8043-01 20 44238795 44238795 A G WFDC9 Missense_Mutation p.V9A 0.45 tolerated(0.06) benign(0.033) TCGA-FF-8043-01 20 6750880 6750880 C T BMP2 Missense_Mutation p.A36V 0.32 tolerated(0.28) benign(0.061) TCGA-FF-8043-01 20 9560944 9560944 G A PAK7 Missense_Mutation p.P280S 0.31 tolerated(0.57) probably_damaging(0.996) TCGA-FF-8043-01 21 22656612 22656612 C T NCAM2 Missense_Mutation p.R77W 0.25 deleterious(0.03) benign(0.332) TCGA-FF-8043-01 21 47349831 47349831 C G PCBP3 Missense_Mutation p.Q240E 0.58 tolerated(1) benign(0.093) TCGA-FF-8043-01 22 23223290 23223290 C T IGLV3-1 Silent p.S20S 0.79 TCGA-FF-8043-01 22 23223439 23223439 G C IGLV3-1 Missense_Mutation p.S70T 0.78 tolerated(0.13) benign(0.008) TCGA-FF-8043-01 2 54135501 54135501 G A PSME4 Nonsense_Mutation p.R914* 0.74 TCGA-FF-8043-01 2 89160401 89160401 T G IGKJ4 Missense_Mutation p.K12Q 0.40 benign(0.011) TCGA-FF-8043-01 2 89160733 89160733 G C IGKJ3 Silent p.%3D 0.30 TCGA-FF-8043-01 2 89160753 89160753 C T IGKJ3 Missense_Mutation p.G7E 0.23 unknown(0) TCGA-FF-8043-01 2 89161037 89161037 G A IGKJ2 Silent p.%3D 0.67 TCGA-FF-8043-01 2 89161050 89161050 C T IGKJ2 Silent p.K9K 0.09 TCGA-FF-8043-01 2 89246834 89246834 C G IGKV1-5 Missense_Mutation p.Q112H 0.33 tolerated(0.06) benign(0.109) TCGA-FF-8043-01 2 89246937 89246937 C T IGKV1-5 Missense_Mutation p.S78N 0.60 deleterious(0.02) benign(0.03) TCGA-FF-8043-01 2 89247016 89247016 T C IGKV1-5 Missense_Mutation p.S52G 0.67 tolerated(0.32) benign(0.013) TCGA-FF-8043-01 2 89247035 89247035 G A IGKV1-5 Silent p.C45C 0.69 TCGA-FF-8043-01 2 89247055 89247055 C T IGKV1-5 Missense_Mutation p.D39N 0.74 deleterious(0.01) benign(0.404) TCGA-FF-8043-01 2 89442167 89442167 G A IGKV3-20 Missense_Mutation p.P80S 0.15 deleterious(0.05) benign(0.412) TCGA-FF-8043-01 2 89442184 89442184 C G IGKV3-20 Missense_Mutation p.S74T 0.20 tolerated(0.64) benign(0.002) TCGA-FF-8043-01 2 89442215 89442215 C T IGKV3-20 Missense_Mutation p.A64T 0.18 deleterious(0.04) benign(0.337) TCGA-FF-8043-01 2 89442255 89442255 G A IGKV3-20 Silent p.S50S 0.23 TCGA-FF-8043-01 2 89442260 89442260 C T IGKV3-20 Missense_Mutation p.V49I 0.26 tolerated(0.59) benign(0.011) TCGA-FF-8043-01 2 89442344 89442344 C T IGKV3-20 Missense_Mutation p.E21K 0.26 tolerated(0.06) possibly_damaging(0.709) TCGA-FF-8043-01 3 100467168 100467168 A T TFG Missense_Mutation p.Q332H 0.37 deleterious_low_confidence(0) benign(0.216) TCGA-FF-8043-01 3 120409318 120409318 T C RABL3 Missense_Mutation p.Y208C 0.43 deleterious(0.04) possibly_damaging(0.907) TCGA-FF-8043-01 3 158289125 158289125 C T MLF1 5'UTR 0.43 TCGA-FF-8043-01 3 184071474 184071474 T G CLCN2 Missense_Mutation p.M611L 0.40 deleterious(0.03) benign(0.002) TCGA-FF-8043-01 3 194408350 194408350 G A FAM43A Silent p.E265E 0.49 TCGA-FF-8043-01 3 38537954 38537954 G A EXOG Silent p.G32G 0.51 TCGA-FF-8043-01 3 51696650 51696650 G A RAD54L2 Silent p.P1206P 0.40 TCGA-FF-8043-01 3 55508445 55508445 G A WNT5A Missense_Mutation p.R202W 0.50 deleterious(0) probably_damaging(0.954) TCGA-FF-8043-01 5 139260442 139260442 G A NRG2 Silent p.S330S 0.30 TCGA-FF-8043-01 5 141033945 141033945 A G ARAP3 Missense_Mutation p.Y1403H 0.46 tolerated_low_confidence(0.48) probably_damaging(0.997) TCGA-FF-8043-01 5 148016611 148016611 A G HTR4 5'UTR 0.16 TCGA-FF-8043-01 5 19473246 19473246 C T CDH18 3'UTR 0.40 TCGA-FF-8043-01 5 41199992 41199992 C T C6 Missense_Mutation p.R108H 0.44 deleterious(0.04) benign(0.291) TCGA-FF-8043-01 6 30893890 30893890 C T VARS2 Missense_Mutation p.S1062F 0.41 deleterious(0.01) probably_damaging(0.957) TCGA-FF-8043-01 6 33283277 33283277 C G ZBTB22 Missense_Mutation p.V473L 0.47 tolerated(0.68) benign(0) TCGA-FF-8043-01 6 393224 393224 C T IRF4 Silent p.L24L 0.39 TCGA-FF-8043-01 6 56374517 56374517 A G DST Missense_Mutation p.L3689S 0.38 benign(0.037) TCGA-FF-8043-01 6 65612316 65612316 C A EYS Missense_Mutation p.D907Y 0.45 deleterious(0) benign(0.347) TCGA-FF-8043-01 6 7313275 7313275 C T SSR1 Missense_Mutation p.G27S 0.50 tolerated(0.42) benign(0.012) TCGA-FF-8043-01 7 107221236 107221236 G A BCAP29 Missense_Mutation p.A7T 0.34 tolerated(0.17) probably_damaging(0.999) TCGA-FF-8043-01 7 121650463 121650463 A C PTPRZ1 Silent p.R455R 0.49 TCGA-FF-8043-01 7 132174144 132174144 C T PLXNA4 Silent p.T426T 0.42 TCGA-FF-8043-01 7 14217692 14217692 C A DGKB Missense_Mutation p.G737V 0.39 deleterious(0) probably_damaging(0.997) TCGA-FF-8043-01 7 14378196 14378196 C A DGKB Missense_Mutation p.G690V 0.36 tolerated(0.32) benign(0.004) TCGA-FF-8043-01 7 1785563 1785563 G A ELFN1 Missense_Mutation p.R444Q 0.35 deleterious(0) probably_damaging(0.979) TCGA-FF-8043-01 7 37960325 37960325 T A EPDR1 5'UTR 0.46 TCGA-FF-8043-01 7 77885700 77885700 A G MAGI2 Missense_Mutation p.V536A 0.45 deleterious(0.01) benign(0.08) TCGA-FF-8043-01 8 10470003 10470003 C T RP1L1 Silent p.S535S 0.36 TCGA-FF-8043-01 8 133186530 133186530 C T KCNQ3 Missense_Mutation p.A334T 0.29 deleterious(0) probably_damaging(0.983) TCGA-FF-8043-01 8 27168726 27168726 G A TRIM35 Silent p.P9P 0.12 TCGA-FF-8043-01 8 30701914 30701914 C T TEX15 Silent p.E1540E 0.38 TCGA-FF-8043-01 8 3141793 3141793 G A CSMD1 Silent p.D1342D 0.36 TCGA-FF-8043-01 8 55534023 55534023 C T RP1 Missense_Mutation p.T166M 0.43 tolerated(0.19) benign(0.097) TCGA-FF-8043-01 9 136599058 136599058 G A SARDH Nonsense_Mutation p.Q80* 0.49 TCGA-FF-8043-01 9 138671231 138671231 C T KCNT1 Missense_Mutation p.T919M 0.49 deleterious(0.02) probably_damaging(0.981) TCGA-FF-8043-01 9 35608460 35608460 G A TESK1 Silent p.L318L 0.44 TCGA-FF-8043-01 9 72897468 72897468 G A SMC5 Missense_Mutation p.R317H 0.42 tolerated(0.53) benign(0.005) TCGA-FF-8043-01 X 1585400 1585400 G A P2RY8 Missense_Mutation p.R18W 0.84 deleterious(0.01) possibly_damaging(0.517) TCGA-FF-8043-01 X 37028314 37028314 C T FAM47C Missense_Mutation p.P611S 0.46 deleterious(0.03) benign(0.07) TCGA-FF-8046-01 10 31137635 31137635 T G ZNF438 Missense_Mutation p.M567L 0.26 tolerated(0.16) benign(0.004) TCGA-FF-8046-01 10 38343345 38343345 A C ZNF33A Missense_Mutation p.N98T 0.20 tolerated(0.21) possibly_damaging(0.466) TCGA-FF-8046-01 11 12281376 12281376 G A MICAL2 Missense_Mutation p.R1089Q 0.38 tolerated_low_confidence(0.6) benign(0.002) TCGA-FF-8046-01 11 47600867 47600867 C T NDUFS3 Silent p.S38S 0.39 TCGA-FF-8046-01 11 84027956 84027956 C T DLG2 Intron 0.34 TCGA-FF-8046-01 12 20787945 20787945 A T PDE3A Missense_Mutation p.K652N 0.07 tolerated(0.46) benign(0.005) TCGA-FF-8046-01 13 101287335 101287335 C A TMTC4 Silent p.G439G 0.05 TCGA-FF-8046-01 13 103504506 103504506 C G BIVM-ERCC5 Missense_Mutation p.R469G 0.25 deleterious(0) benign(0.35) TCGA-FF-8046-01 13 113744397 113744397 G T MCF2L Intron 0.47 TCGA-FF-8046-01 14 106173799 106173799 G T IGHA1 Missense_Mutation p.S256R 0.21 tolerated(0.25) probably_damaging(0.922) TCGA-FF-8046-01 14 106173834 106173834 G C IGHA1 Missense_Mutation p.L245V 0.20 tolerated(0.09) possibly_damaging(0.567) TCGA-FF-8046-01 14 107049109 107049109 C G IGHV3-53 Missense_Mutation p.W4C 0.28 tolerated_low_confidence(0.15) benign(0.058) TCGA-FF-8046-01 14 107179006 107179006 C G IGHV2-70 Missense_Mutation p.W57C 0.31 deleterious(0) probably_damaging(0.954) TCGA-FF-8046-01 15 56387864 56387864 G A RFX7 Nonsense_Mutation p.Q688* 0.40 TCGA-FF-8046-01 15 75980270 75980270 C T CSPG4 Missense_Mutation p.D1046N 0.51 deleterious(0) probably_damaging(1) TCGA-FF-8046-01 15 98512603 98512603 C G ARRDC4 Silent p.S292S 0.38 TCGA-FF-8046-01 16 33647353 33647353 C G RP11-812E19.9 Missense_Mutation p.V83L 0.28 deleterious_low_confidence(0.01) benign(0.088) TCGA-FF-8046-01 16 71570645 71570645 T - CHST4 Frame_Shift_Del p.L22Hfs*15 0.29 TCGA-FF-8046-01 17 26919654 26919654 T C SPAG5 Missense_Mutation p.E203G 0.35 tolerated_low_confidence(0.13) unknown(0) TCGA-FF-8046-01 17 4645298 4645298 G A ZMYND15 Missense_Mutation p.A306T 0.32 tolerated(0.11) probably_damaging(0.922) TCGA-FF-8046-01 17 6352690 6352690 T C FAM64A Missense_Mutation p.S217P 0.06 deleterious(0.02) benign(0.335) TCGA-FF-8046-01 17 66918384 66918384 T C ABCA8 Silent p.K500K 0.34 TCGA-FF-8046-01 17 73321980 73321980 T C GRB2 Missense_Mutation p.K100E 0.29 tolerated(0.05) possibly_damaging(0.87) TCGA-FF-8046-01 18 45566798 45566798 G A ZBTB7C Silent p.I227I 0.37 TCGA-FF-8046-01 19 15224520 15224520 G A SYDE1 Missense_Mutation p.A652T 0.26 deleterious(0) probably_damaging(0.999) TCGA-FF-8046-01 19 44777859 44777859 G A ZNF233 Missense_Mutation p.R349Q 0.30 deleterious(0.01) benign(0) TCGA-FF-8046-01 1 145528314 145528314 T A ITGA10 Missense_Mutation p.L112Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-FF-8046-01 1 154544356 154544356 C T CHRNB2 Missense_Mutation p.R353C 0.56 deleterious(0.05) possibly_damaging(0.773) TCGA-FF-8046-01 1 156941496 156941496 C A ARHGEF11 Missense_Mutation p.G232V 0.30 deleterious(0.04) benign(0.029) TCGA-FF-8046-01 1 186357578 186357578 T A C1orf27 Missense_Mutation p.M112K 0.31 deleterious(0) benign(0.008) TCGA-FF-8046-01 1 203186088 203186088 G A CHIT1 Missense_Mutation p.R444W 0.20 tolerated(0.09) benign(0.06) TCGA-FF-8046-01 1 23885690 23885690 G T ID3 Nonsense_Mutation p.Y76* 0.60 TCGA-FF-8046-01 1 90401410 90401410 T A LRRC8D 3'UTR 0.28 TCGA-FF-8046-01 20 14665585 14665585 G T MACROD2 Missense_Mutation p.G133V 0.35 deleterious(0) probably_damaging(0.996) TCGA-FF-8046-01 20 39977298 39977299 - G LPIN3 Frame_Shift_Ins p.L113Sfs*15 0.26 TCGA-FF-8046-01 21 10971306 10971306 G A TPTE Silent p.L17L 0.12 TCGA-FF-8046-01 21 31692282 31692282 G T KRTAP26-1 Silent p.L24L 0.36 TCGA-FF-8046-01 21 9907285 9907285 A T TEKT4P2 RNA 0.12 TCGA-FF-8046-01 21 9907446 9907446 T C TEKT4P2 RNA 0.11 TCGA-FF-8046-01 22 23029545 23029545 A T IGLV3-25 Missense_Mutation p.Q49H 0.28 tolerated(0.11) benign(0.014) TCGA-FF-8046-01 22 23029586 23029594 TGCTGGTGA - IGLV3-25 In_Frame_Del p.L64_I66del 0.13 TCGA-FF-8046-01 22 23040686 23040686 G C IGLV2-23 Missense_Mutation p.S45T 0.13 deleterious_low_confidence(0.05) benign(0.145) TCGA-FF-8046-01 22 23040743 23040743 C T IGLV2-23 Missense_Mutation p.A64V 0.18 tolerated_low_confidence(0.09) benign(0.028) TCGA-FF-8046-01 22 23040882 23040882 C T IGLV2-23 Silent p.C110C 0.33 TCGA-FF-8046-01 22 23040893 23040893 G A IGLV2-23 3'Flank 0.32 TCGA-FF-8046-01 22 23090270 23090270 G C IGLV3-16 Missense_Mutation p.S70T 0.44 tolerated(0.15) benign(0.026) TCGA-FF-8046-01 22 23090397 23090397 T C IGLV3-16 Silent p.S112S 0.40 TCGA-FF-8046-01 22 23101452 23101452 T C IGLV2-14 Missense_Mutation p.S36P 0.33 tolerated_low_confidence(0.06) possibly_damaging(0.722) TCGA-FF-8046-01 22 23101555 23101555 A G IGLV2-14 Missense_Mutation p.Y70C 0.19 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-FF-8046-01 22 23101566 23101566 A G IGLV2-14 Missense_Mutation p.N74D 0.27 tolerated_low_confidence(0.17) benign(0.039) TCGA-FF-8046-01 22 23101654 23101654 A G IGLV2-14 Missense_Mutation p.D103G 0.24 deleterious_low_confidence(0) possibly_damaging(0.529) TCGA-FF-8046-01 22 23101658 23101658 G A IGLV2-14 Silent p.E104E 0.19 TCGA-FF-8046-01 22 23101660 23101660 C T IGLV2-14 Missense_Mutation p.A105V 0.21 deleterious_low_confidence(0.02) benign(0.246) TCGA-FF-8046-01 22 30867895 30867895 G C SEC14L3 Silent p.A17A 0.30 TCGA-FF-8046-01 22 45802439 45802439 T G SMC1B Silent p.R173R 0.38 TCGA-FF-8046-01 2 141294279 141294279 C A LRP1B Splice_Site p.X2505_splice 0.33 TCGA-FF-8046-01 2 1440045 1440045 T C TPO Missense_Mutation p.L124P 0.34 deleterious(0) probably_damaging(0.987) TCGA-FF-8046-01 2 152432215 152432215 C A NEB Silent p.V5669V 0.34 TCGA-FF-8046-01 2 179600638 179600638 G A TTN Silent p.D4845D 0.21 TCGA-FF-8046-01 2 202141586 202141586 C T CASP8 Missense_Mutation p.R292W 0.09 deleterious(0) probably_damaging(1) TCGA-FF-8046-01 2 202141597 202141597 T A CASP8 Nonsense_Mutation p.C295* 0.08 TCGA-FF-8046-01 2 38976739 38976739 G C SRSF7 Missense_Mutation p.C106W 0.32 deleterious(0) probably_damaging(1) TCGA-FF-8046-01 2 38977316 38977316 T A SRSF7 Missense_Mutation p.N17Y 0.38 deleterious(0.01) possibly_damaging(0.823) TCGA-FF-8046-01 2 70188262 70188262 C T ASPRV1 Missense_Mutation p.V187I 0.49 tolerated(0.27) benign(0.007) TCGA-FF-8046-01 2 89567911 89567911 A T IGKV1-33 Silent p.P66P 0.12 TCGA-FF-8046-01 2 97509750 97509750 C G ANKRD23 5'UTR 0.21 TCGA-FF-8046-01 3 102187877 102187877 A T ZPLD1 Missense_Mutation p.E293D 0.34 tolerated(0.09) possibly_damaging(0.877) TCGA-FF-8046-01 3 4681129 4681129 T C ITPR1 Missense_Mutation p.V114A 0.25 deleterious(0.02) possibly_damaging(0.616) TCGA-FF-8046-01 3 51317590 51317590 T C DOCK3 Silent p.H959H 0.27 TCGA-FF-8046-01 3 66432748 66432748 C G LRIG1 Missense_Mutation p.V856L 0.26 tolerated(0.3) benign(0.001) TCGA-FF-8046-01 3 69928321 69928321 G A MITF Silent p.P47P 0.32 TCGA-FF-8046-01 5 130970802 130970802 A G RAPGEF6 5'UTR 0.25 TCGA-FF-8046-01 5 176306990 176306990 G A UNC5A 3'UTR 0.25 TCGA-FF-8046-01 6 17706506 17706506 A T NUP153 Splice_Site p.X37_splice 0.26 TCGA-FF-8046-01 6 26124688 26124688 G A HIST1H2AC Silent p.K76K 0.24 TCGA-FF-8046-01 6 34004150 34004150 G C GRM4 Missense_Mutation p.I579M 0.20 tolerated(0.1) benign(0.406) TCGA-FF-8046-01 6 75969072 75969072 G A TMEM30A Nonsense_Mutation p.R226* 0.37 TCGA-FF-8046-01 7 130067800 130067800 G T CEP41 Missense_Mutation p.D31E 0.38 deleterious(0) possibly_damaging(0.858) TCGA-FF-8046-01 7 146997236 146997236 C T CNTNAP2 Missense_Mutation p.S451F 0.26 deleterious(0.05) benign(0.082) TCGA-FF-8046-01 7 33014897 33014897 G A FKBP9 Silent p.P157P 0.32 TCGA-FF-8046-01 8 128750536 128750536 A G MYC Missense_Mutation p.R25G 0.34 deleterious(0) benign(0.023) TCGA-FF-8046-01 8 128750559 128750559 C G MYC Missense_Mutation p.D32E 0.32 deleterious(0.03) benign(0.073) TCGA-FF-8046-01 8 128750613 128750613 G A MYC Silent p.Q50Q 0.31 TCGA-FF-8046-01 8 128750625 128750625 G C MYC Missense_Mutation p.E54D 0.31 tolerated(0.36) benign(0.091) TCGA-FF-8046-01 8 128750803 128750803 C T MYC Silent p.L114L 0.33 TCGA-FF-8046-01 8 128751021 128751021 C T MYC Silent p.C186C 0.29 TCGA-FF-8046-01 8 128751241 128751241 C G MYC Missense_Mutation p.P260A 0.44 tolerated(0.56) benign(0.346) TCGA-FF-8046-01 8 128752802 128752802 G C MYC Missense_Mutation p.Q321H 0.35 deleterious(0) probably_damaging(0.998) TCGA-FF-8046-01 8 128752907 128752907 A G MYC Silent p.K356K 0.39 TCGA-FF-8046-01 8 128808223 128808223 C T PVT1 RNA 0.32 TCGA-FF-8046-01 8 139626110 139626110 C T COL22A1 Silent p.P1326P 0.24 TCGA-FF-8046-01 8 22005779 22005779 C T LGI3 Missense_Mutation p.R514Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-FF-8046-01 8 38677553 38677553 A G TACC1 Missense_Mutation p.Y264C 0.29 tolerated(0.06) benign(0.013) TCGA-FF-8046-01 8 42166458 42166458 G A IKBKB Missense_Mutation p.V203I 0.42 deleterious(0) probably_damaging(0.999) TCGA-FF-8046-01 9 104189813 104189813 A G ALDOB Missense_Mutation p.I164T 0.22 deleterious(0) probably_damaging(0.997) TCGA-FF-8046-01 9 113259095 113259095 C G SVEP1 Missense_Mutation p.K600N 0.29 possibly_damaging(0.689) TCGA-FF-8046-01 9 6329752 6329752 T A TPD52L3 3'UTR 0.30 TCGA-FF-8046-01 9 85863362 85863362 C T FRMD3 Missense_Mutation p.R422Q 0.35 tolerated(0.62) benign(0.001) TCGA-FF-8046-01 X 136112327 136112327 C T GPR101 Missense_Mutation p.D503N 0.70 tolerated_low_confidence(0.14) benign(0.008) TCGA-FF-8046-01 X 41204802 41204802 G T DDX3X Splice_Site p.X439_splice 0.53 TCGA-FF-8046-01 X 92928071 92928071 T G NAP1L3 Missense_Mutation p.K78T 0.28 tolerated(0.14) possibly_damaging(0.637) TCGA-FF-8047-01 10 105799223 105799223 T C COL17A1 Missense_Mutation p.Q959R 0.43 benign(0.019) TCGA-FF-8047-01 10 116331143 116331143 G A ABLIM1 Nonsense_Mutation p.R196* 0.50 TCGA-FF-8047-01 10 118464772 118464772 G A HSPA12A Silent p.N48N 0.39 TCGA-FF-8047-01 10 120790773 120790773 A C NANOS1 3'UTR 0.39 TCGA-FF-8047-01 10 120790840 120790840 A C NANOS1 3'UTR 0.39 TCGA-FF-8047-01 10 28527517 28527517 G A MPP7 Missense_Mutation p.T6M 0.44 deleterious(0.01) benign(0.312) TCGA-FF-8047-01 10 44139429 44139429 A C ZNF32 3'UTR 0.58 TCGA-FF-8047-01 10 90574359 90574359 G T LIPM Missense_Mutation p.K179N 0.29 tolerated(0.05) benign(0.018) TCGA-FF-8047-01 11 101834522 101834522 C T KIAA1377 Missense_Mutation p.P919L 0.49 tolerated(0.33) benign(0.079) TCGA-FF-8047-01 11 111385703 111385703 C T C11orf88 Missense_Mutation p.P65L 0.49 deleterious(0) probably_damaging(0.974) TCGA-FF-8047-01 11 117374656 117374656 G A DSCAML1 Missense_Mutation p.R815C 0.48 deleterious(0.01) probably_damaging(0.961) TCGA-FF-8047-01 11 118371761 118371761 A G KMT2A Missense_Mutation p.K2073R 0.21 probably_damaging(0.998) TCGA-FF-8047-01 11 121429298 121429298 A G SORL1 Splice_Site p.X888_splice 0.36 TCGA-FF-8047-01 11 134188798 134188798 G A GLB1L3 Missense_Mutation p.G642S 0.36 deleterious(0.03) benign(0.411) TCGA-FF-8047-01 11 17793670 17793670 C T KCNC1 Silent p.N343N 0.48 TCGA-FF-8047-01 11 4825192 4825192 G A OR52R1 Missense_Mutation p.T140I 0.47 deleterious(0) possibly_damaging(0.774) TCGA-FF-8047-01 11 55433333 55433333 C T OR4C6 Missense_Mutation p.R231W 0.40 deleterious_low_confidence(0.05) benign(0.104) TCGA-FF-8047-01 11 55433434 55433434 C A OR4C6 Silent p.P264P 0.44 TCGA-FF-8047-01 11 65836292 65836292 G T SF3B2 3'UTR 0.51 TCGA-FF-8047-01 11 85779804 85779804 T C PICALM Missense_Mutation p.T7A 0.10 deleterious(0) benign(0) TCGA-FF-8047-01 11 94353161 94353161 A G PIWIL4 Splice_Site p.X765_splice 0.48 TCGA-FF-8047-01 12 122248312 122248314 GTC TT SETD1B Frame_Shift_Del p.P489Lfs*19 0.33 TCGA-FF-8047-01 12 123187023 123187023 G A HCAR2 Missense_Mutation p.R270C 0.25 deleterious(0.01) possibly_damaging(0.67) TCGA-FF-8047-01 12 123200477 123200477 G A HCAR3 Missense_Mutation p.R270C 0.08 deleterious(0.01) possibly_damaging(0.747) TCGA-FF-8047-01 12 130847589 130847589 G A PIWIL1 Missense_Mutation p.V699M 0.33 deleterious(0) probably_damaging(0.957) TCGA-FF-8047-01 12 4668142 4668142 A G RAD51AP1 Missense_Mutation p.N348D 0.42 deleterious(0.01) possibly_damaging(0.767) TCGA-FF-8047-01 12 49421689 49421689 C A KMT2D Missense_Mutation p.G4847V 0.36 unknown(0) TCGA-FF-8047-01 13 100204538 100204538 G C TM9SF2 Silent p.V482V 0.10 TCGA-FF-8047-01 13 20398495 20398495 G A ZMYM5 3'UTR 0.38 TCGA-FF-8047-01 14 37641727 37641727 G A SLC25A21-AS1 Missense_Mutation p.R46H 0.41 unknown(0) TCGA-FF-8047-01 14 45624650 45624650 A T FANCM Nonsense_Mutation p.K462* 0.32 TCGA-FF-8047-01 15 23890645 23890645 G A MAGEL2 Missense_Mutation p.R146C 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FF-8047-01 15 31266590 31266590 A C MTMR10 Nonsense_Mutation p.L134* 0.55 TCGA-FF-8047-01 15 34646016 34646016 A G NUTM1 Missense_Mutation p.T312A 0.49 tolerated(1) benign(0.001) TCGA-FF-8047-01 15 48779516 48779516 C T FBN1 Silent p.A1152A 0.55 TCGA-FF-8047-01 15 65157677 65157677 C G PLEKHO2 Missense_Mutation p.P355A 0.46 tolerated(0.35) benign(0.014) TCGA-FF-8047-01 15 75090639 75090639 A T CSK Translation_Start_Site p.M1? 0.44 deleterious_low_confidence(0) benign(0) TCGA-FF-8047-01 15 90321390 90321390 G A MESP2 Missense_Mutation p.G340E 0.50 deleterious_low_confidence(0) benign(0.001) TCGA-FF-8047-01 16 2326687 2326687 C A ABCA3 Missense_Mutation p.E1701D 0.41 tolerated(0.7) benign(0.002) TCGA-FF-8047-01 16 30905230 30905230 G A BCL7C Silent p.S12S 0.44 TCGA-FF-8047-01 16 58073912 58073912 C T MMP15 Nonsense_Mutation p.Q192* 0.12 TCGA-FF-8047-01 16 67220777 67220777 G A EXOC3L1 Missense_Mutation p.S390F 0.88 tolerated(0.08) benign(0.056) TCGA-FF-8047-01 16 69922105 69922105 A G WWP2 Silent p.T289T 0.07 TCGA-FF-8047-01 16 8619675 8619675 G A TMEM114 3'UTR 0.45 TCGA-FF-8047-01 16 88724416 88724416 C T MVD Missense_Mutation p.V55I 0.11 tolerated(0.16) benign(0) TCGA-FF-8047-01 17 21208440 21208440 G A MAP2K3 Missense_Mutation p.M258I 0.13 tolerated(0.07) benign(0.144) TCGA-FF-8047-01 17 27829683 27829683 G A TAOK1 Missense_Mutation p.R427H 0.45 tolerated(0.1) benign(0.34) TCGA-FF-8047-01 17 38859553 38859553 G T KRT24 Silent p.G131G 0.48 TCGA-FF-8047-01 17 40985663 40985663 G A PSME3 Silent p.L5L 0.45 TCGA-FF-8047-01 17 43923211 43923211 G A SPPL2C Silent p.P313P 0.37 TCGA-FF-8047-01 17 48543124 48543124 G A CHAD Silent p.T294T 0.42 TCGA-FF-8047-01 17 5049419 5049419 C G USP6 Missense_Mutation p.L757V 0.38 tolerated_low_confidence(0.29) probably_damaging(0.998) TCGA-FF-8047-01 17 56232687 56232687 C A OR4D1 Missense_Mutation p.P58H 0.49 deleterious(0) probably_damaging(0.966) TCGA-FF-8047-01 17 61775957 61775957 C T LIMD2 Silent p.E113E 0.41 TCGA-FF-8047-01 17 61776164 61776164 C T LIMD2 Silent p.K73K 0.43 TCGA-FF-8047-01 17 62850671 62850671 C T LRRC37A3 3'UTR 0.38 TCGA-FF-8047-01 17 72923357 72923357 G A OTOP2 Missense_Mutation p.V164I 0.48 tolerated(0.37) benign(0.001) TCGA-FF-8047-01 18 55103350 55103350 C T ONECUT2 Silent p.S134S 0.33 TCGA-FF-8047-01 18 6882194 6882194 T A ARHGAP28 Missense_Mutation p.M291K 0.82 deleterious(0) possibly_damaging(0.762) TCGA-FF-8047-01 19 13873535 13873535 G A CCDC130 Missense_Mutation p.A282T 0.39 tolerated(0.17) benign(0.01) TCGA-FF-8047-01 19 2852470 2852470 T A ZNF555 Missense_Mutation p.I136N 0.40 tolerated(0.06) benign(0.08) TCGA-FF-8047-01 19 3612193 3612193 G A CACTIN Missense_Mutation p.P669S 0.48 deleterious(0) probably_damaging(0.999) TCGA-FF-8047-01 19 36124108 36124108 C T RBM42 Missense_Mutation p.A213V 0.11 tolerated(0.13) unknown(0) TCGA-FF-8047-01 19 45261657 45261657 C T BCL3 Missense_Mutation p.A349V 0.49 deleterious(0) possibly_damaging(0.761) TCGA-FF-8047-01 19 59010920 59010920 C T SLC27A5 Missense_Mutation p.V536I 0.37 deleterious(0.03) benign(0.056) TCGA-FF-8047-01 1 118567949 118567949 G A SPAG17 Missense_Mutation p.T1274M 0.48 deleterious(0.02) benign(0.143) TCGA-FF-8047-01 1 1229293 1229293 T C ACAP3 Missense_Mutation p.K757R 0.12 deleterious(0.01) benign(0.332) TCGA-FF-8047-01 1 160121964 160121964 A G ATP1A4 Missense_Mutation p.K45R 0.08 tolerated(0.07) benign(0.104) TCGA-FF-8047-01 1 170699418 170699418 A G PRRX1 Intron 0.28 TCGA-FF-8047-01 1 173879939 173879939 T G SERPINC1 Missense_Mutation p.I239L 0.18 tolerated(0.66) benign(0.14) TCGA-FF-8047-01 1 19175988 19175988 G A TAS1R2 Silent p.F438F 0.43 TCGA-FF-8047-01 1 223567405 223567405 C T C1orf65 Silent p.P196P 0.23 TCGA-FF-8047-01 1 23236932 23236932 G A EPHB2 Missense_Mutation p.A855T 0.75 tolerated(0.14) benign(0.01) TCGA-FF-8047-01 1 2488105 2488105 T C TNFRSF14 Translation_Start_Site p.M1? 0.95 deleterious(0) probably_damaging(0.991) TCGA-FF-8047-01 1 28823120 28823120 A G PHACTR4 3'UTR 0.75 TCGA-FF-8047-01 1 32681609 32681609 T A DCDC2B 3'UTR 0.78 TCGA-FF-8047-01 1 84543940 84543940 C G RP11-486G15.2 5'Flank 0.46 TCGA-FF-8047-01 20 61907883 61907883 G A ARFGAP1 Silent p.K74K 0.40 TCGA-FF-8047-01 21 45753051 45753051 G A C21orf2 Missense_Mutation p.L80F 0.44 deleterious(0) probably_damaging(0.998) TCGA-FF-8047-01 21 47423737 47423737 G A COL6A1 Missense_Mutation p.G966D 0.42 tolerated(0.13) benign(0.131) TCGA-FF-8047-01 22 23154492 23154492 T C IGLV3-10 Missense_Mutation p.Y21H 0.38 deleterious(0.05) possibly_damaging(0.852) TCGA-FF-8047-01 22 23154635 23154635 G A IGLV3-10 Silent p.E68E 0.25 TCGA-FF-8047-01 22 23154641 23154641 C G IGLV3-10 Missense_Mutation p.S70R 0.33 deleterious(0.04) benign(0.349) TCGA-FF-8047-01 22 23154683 23154683 C G IGLV3-10 Missense_Mutation p.S84R 0.30 tolerated(0.15) benign(0.03) TCGA-FF-8047-01 22 23154776 23154776 T C IGLV3-10 Silent p.H115H 0.39 TCGA-FF-8047-01 22 23161973 23161973 G A IGLV3-9 Silent p.E22E 0.31 TCGA-FF-8047-01 22 23161992 23161992 G A IGLV3-9 Missense_Mutation p.V29M 0.28 deleterious(0.03) benign(0.174) TCGA-FF-8047-01 22 23162116 23162116 G C IGLV3-9 Missense_Mutation p.S70T 0.34 tolerated(0.1) benign(0.035) TCGA-FF-8047-01 22 23162145 23162145 T C IGLV3-9 Missense_Mutation p.F80L 0.42 deleterious(0.01) probably_damaging(0.986) TCGA-FF-8047-01 22 23223304 23223304 A G IGLV3-1 Missense_Mutation p.Q25R 0.84 deleterious(0.02) probably_damaging(0.944) TCGA-FF-8047-01 22 23223338 23223338 A C IGLV3-1 Silent p.T36T 0.82 TCGA-FF-8047-01 22 23223439 23223439 G A IGLV3-1 Missense_Mutation p.S70N 0.82 tolerated(0.39) benign(0.004) TCGA-FF-8047-01 22 23223496 23223496 C T IGLV3-1 Missense_Mutation p.A89V 0.79 deleterious(0.05) benign(0.324) TCGA-FF-8047-01 22 23230278 23230278 G A IGLL5 Silent p.E15E 0.86 TCGA-FF-8047-01 22 23230371 23230371 A T IGLL5 Missense_Mutation p.Q46H 0.78 tolerated_low_confidence(0.13) possibly_damaging(0.615) TCGA-FF-8047-01 22 23230380 23230380 C T IGLL5 Silent p.D49D 0.77 TCGA-FF-8047-01 22 23248761 23248761 G A IGLC3 Missense_Mutation p.S84N 0.15 benign(0.005) TCGA-FF-8047-01 22 23248876 23248876 A C IGLC3 3'UTR 0.13 TCGA-FF-8047-01 22 50714348 50714348 G A AL022328.1 Missense_Mutation p.E56K 0.29 deleterious_low_confidence(0) unknown(0) TCGA-FF-8047-01 2 113674819 113674819 C T IL37 Missense_Mutation p.R87C 0.33 tolerated(0.21) benign(0.007) TCGA-FF-8047-01 2 122135079 122135079 T C CLASP1 Missense_Mutation p.D1213G 0.44 tolerated(0.07) benign(0.018) TCGA-FF-8047-01 2 138724739 138724739 G A HNMT Intron 0.33 TCGA-FF-8047-01 2 152536281 152536281 G A NEB Missense_Mutation p.A1070V 0.40 probably_damaging(0.99) TCGA-FF-8047-01 2 168726537 168726537 T A B3GALT1 3'UTR 0.49 TCGA-FF-8047-01 2 18112487 18112487 G A KCNS3 Missense_Mutation p.R71Q 0.43 deleterious(0) probably_damaging(0.986) TCGA-FF-8047-01 2 189864021 189864021 G A COL3A1 Missense_Mutation p.G678D 0.56 unknown(0) TCGA-FF-8047-01 2 23785138 23785138 C T KLHL29 Silent p.N24N 0.38 TCGA-FF-8047-01 2 241992639 241992639 C T SNED1 Missense_Mutation p.A718V 0.63 tolerated(0.1) benign(0.197) TCGA-FF-8047-01 2 36970315 36970315 C A VIT Missense_Mutation p.A64E 0.48 deleterious(0.01) probably_damaging(0.92) TCGA-FF-8047-01 2 90193272 90193272 A C IGKV1D-13 Missense_Mutation p.K67Q 0.25 deleterious(0.04) possibly_damaging(0.463) TCGA-FF-8047-01 3 138009387 138009387 G A ARMC8 Splice_Site p.X618_splice 0.30 TCGA-FF-8047-01 3 138181019 138181019 C G ESYT3 Missense_Mutation p.L296V 0.58 tolerated(0.79) benign(0.002) TCGA-FF-8047-01 3 183273170 183273170 G A KLHL6 Missense_Mutation p.A91V 0.34 tolerated(0.14) probably_damaging(0.999) TCGA-FF-8047-01 3 52400534 52400534 C T DNAH1 Silent p.L1860L 0.42 TCGA-FF-8047-01 4 155411418 155411418 C T DCHS2 Missense_Mutation p.V364M 0.67 deleterious(0) probably_damaging(0.92) TCGA-FF-8047-01 4 170400567 170400567 T A NEK1 Missense_Mutation p.K709I 0.84 deleterious(0) probably_damaging(0.947) TCGA-FF-8047-01 4 172735635 172735635 G T GALNTL6 5'UTR 0.90 TCGA-FF-8047-01 4 8089920 8089920 C T ABLIM2 Missense_Mutation p.A144T 0.48 tolerated(0.36) benign(0.001) TCGA-FF-8047-01 4 82092909 82092909 A G PRKG2 Silent p.P226P 0.06 TCGA-FF-8047-01 5 11732341 11732341 C A CTNND2 Missense_Mutation p.K27N 0.43 tolerated(0.58) benign(0.003) TCGA-FF-8047-01 5 127664352 127664352 C T FBN2 Intron 0.07 TCGA-FF-8047-01 5 140242304 140242304 C T AC005609.1 3'UTR 0.47 TCGA-FF-8047-01 5 147470759 147470759 G A SPINK5 Missense_Mutation p.G212S 0.41 tolerated(0.32) benign(0.073) TCGA-FF-8047-01 5 65349497 65349497 C A ERBB2IP Nonsense_Mutation p.S784* 0.53 TCGA-FF-8047-01 6 138583857 138583857 G A KIAA1244 Missense_Mutation p.E413K 0.38 deleterious(0) probably_damaging(0.998) TCGA-FF-8047-01 6 138745866 138745866 G A NHSL1 Silent p.G1395G 0.45 TCGA-FF-8047-01 6 147612247 147612247 G T STXBP5 Missense_Mutation p.G286W 0.45 deleterious(0) possibly_damaging(0.871) TCGA-FF-8047-01 6 152651974 152651974 C T SYNE1 Missense_Mutation p.E4616K 0.46 probably_damaging(0.997) TCGA-FF-8047-01 6 26123774 26123774 G A HIST1H2BC Missense_Mutation p.T120I 0.32 deleterious_low_confidence(0.02) benign(0.097) TCGA-FF-8047-01 6 26124919 26124919 C T HIST1H2AC Intron 0.45 TCGA-FF-8047-01 6 26240696 26240696 G A HIST1H4F Missense_Mutation p.G15S 0.45 tolerated_low_confidence(0.07) unknown(0) TCGA-FF-8047-01 6 35765083 35765083 G T CLPS 5'UTR 0.34 TCGA-FF-8047-01 6 41557528 41557528 G A FOXP4 Missense_Mutation p.R362Q 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-FF-8047-01 6 44232739 44232742 GTAA - NFKBIE Frame_Shift_Del p.Y254Sfs*13 0.24 TCGA-FF-8047-01 6 44232998 44232999 - G NFKBIE Frame_Shift_Ins p.L168Pfs*42 0.22 TCGA-FF-8047-01 6 46656149 46656149 G A TDRD6 Missense_Mutation p.R95H 0.53 deleterious(0) probably_damaging(0.969) TCGA-FF-8047-01 6 55147308 55147308 T G HCRTR2 3'UTR 0.56 TCGA-FF-8047-01 6 7569564 7569564 T C DSP Missense_Mutation p.L522P 0.04 probably_damaging(0.999) TCGA-FF-8047-01 6 94120454 94120454 T G EPHA7 Missense_Mutation p.K199N 0.43 deleterious(0) possibly_damaging(0.652) TCGA-FF-8047-01 6 96053987 96053987 C T MANEA Silent p.I365I 0.56 TCGA-FF-8047-01 7 110764121 110764121 T C LRRN3 Silent p.N431N 0.52 TCGA-FF-8047-01 7 136936058 136936058 G A PTN Nonsense_Mutation p.R124* 0.48 TCGA-FF-8047-01 7 19738329 19738329 T C TWISTNB Silent p.E209E 0.49 TCGA-FF-8047-01 7 4823361 4823361 C T AP5Z1 Missense_Mutation p.R185C 0.45 deleterious(0) probably_damaging(0.979) TCGA-FF-8047-01 7 76058885 76058885 C T ZP3 Silent p.P122P 0.42 TCGA-FF-8047-01 8 103269903 103269903 C T UBR5 Nonsense_Mutation p.W2715* 0.52 TCGA-FF-8047-01 8 114111175 114111175 C A CSMD3 Nonsense_Mutation p.G243* 0.49 TCGA-FF-8047-01 8 128750820 128750820 G A MYC Silent p.E119E 0.50 TCGA-FF-8047-01 8 77766731 77766731 A T ZFHX4 Missense_Mutation p.H2525L 0.12 probably_damaging(0.964) TCGA-FF-8047-01 9 131476377 131476377 A G PKN3 Missense_Mutation p.E430G 0.34 deleterious(0) benign(0.034) TCGA-FF-8047-01 9 13150599 13150599 C T MPDZ Missense_Mutation p.V1181M 0.37 tolerated(0.19) benign(0.248) TCGA-FF-8047-01 9 70871857 70871857 T A CBWD3 Missense_Mutation p.W151R 0.24 deleterious(0) probably_damaging(0.995) TCGA-FF-8047-01 9 84531939 84531939 C A SPATA31D5P RNA 0.44 TCGA-FF-8047-01 X 109697658 109697658 G A RGAG1 Silent p.R1271R 0.07 TCGA-FF-8047-01 X 118708868 118708868 C T UBE2A Nonsense_Mutation p.Q17* 0.78 TCGA-FF-8047-01 X 123182892 123182892 A T STAG2 Missense_Mutation p.N286I 0.08 deleterious(0) benign(0.135) TCGA-FF-8047-01 X 123480520 123480520 A T SH2D1A Nonsense_Mutation p.K10* 0.05 TCGA-FF-8047-01 X 129318434 129318434 C G RAB33A Missense_Mutation p.P145R 0.06 deleterious(0) probably_damaging(0.999) TCGA-FF-8047-01 X 129629827 129629827 G C RP1-274L7.1 Intron 0.05 TCGA-FF-8047-01 X 133700486 133700486 C T PLAC1 Missense_Mutation p.R76H 0.05 tolerated(0.05) probably_damaging(0.999) TCGA-FF-8047-01 X 140271025 140271025 C A LDOC1 Missense_Mutation p.S61I 0.70 tolerated(0.05) benign(0.211) TCGA-FF-8047-01 X 149896207 149896207 A C MTMR1 Missense_Mutation p.K159Q 0.75 deleterious(0.02) benign(0.275) TCGA-FF-8047-01 X 149896262 149896262 A G MTMR1 Missense_Mutation p.K177R 0.74 deleterious(0) probably_damaging(1) TCGA-FF-8047-01 X 151092134 151092134 A T MAGEA4 5'UTR 0.04 TCGA-FF-8047-01 X 153599527 153599527 C T FLNA Silent p.P29P 0.07 TCGA-FF-8047-01 X 22117216 22117216 C T PHEX Silent p.R342R 0.09 TCGA-FF-8047-01 X 34148961 34148961 G A FAM47A Missense_Mutation p.H479Y 0.79 tolerated(1) possibly_damaging(0.888) TCGA-FF-8047-01 X 34648285 34648285 C G TMEM47 3'UTR 0.57 TCGA-FF-8047-01 X 48462764 48462765 - G WDR13 Frame_Shift_Ins p.A422Gfs*8 0.43 TCGA-FF-8047-01 X 54496565 54496565 G A FGD1 Missense_Mutation p.R329W 0.09 deleterious(0) benign(0.041) TCGA-FF-8047-01 X 64722685 64722685 A G ZC3H12B Missense_Mutation p.S703G 0.04 deleterious(0.04) probably_damaging(0.993) TCGA-FF-8061-01 10 64565347 64565347 C G ADO Nonsense_Mutation p.Y176* 0.17 TCGA-FF-8061-01 10 73122524 73122524 G A SLC29A3 3'UTR 0.50 TCGA-FF-8061-01 10 95089487 95089487 A G MYOF Missense_Mutation p.I1639T 0.44 deleterious(0) possibly_damaging(0.833) TCGA-FF-8061-01 11 101834043 101834043 A C KIAA1377 Missense_Mutation p.K759N 0.11 deleterious(0) benign(0.19) TCGA-FF-8061-01 11 66191437 66191437 C A NPAS4 Missense_Mutation p.T359N 0.37 deleterious(0.01) benign(0) TCGA-FF-8061-01 11 67057696 67057696 G A ANKRD13D Intron 0.54 TCGA-FF-8061-01 11 76371849 76371849 G A LRRC32 Missense_Mutation p.A263V 0.34 tolerated(0.24) benign(0.002) TCGA-FF-8061-01 11 76996151 76996151 C T GDPD4 Missense_Mutation p.S11N 0.31 tolerated(1) benign(0) TCGA-FF-8061-01 11 9685820 9685820 C T SWAP70 Missense_Mutation p.L32F 0.43 deleterious(0) benign(0.398) TCGA-FF-8061-01 12 10599073 10599073 T G KLRC1 3'UTR 0.46 TCGA-FF-8061-01 12 108620920 108620920 G A WSCD2 Missense_Mutation p.V320M 0.16 deleterious(0.01) benign(0.17) TCGA-FF-8061-01 12 120295436 120295436 A G CIT Missense_Mutation p.L102P 0.31 deleterious(0) possibly_damaging(0.794) TCGA-FF-8061-01 12 130892335 130892335 G A RIMBP2 Missense_Mutation p.T954M 0.36 deleterious(0.01) possibly_damaging(0.49) TCGA-FF-8061-01 12 2676736 2676736 C T CACNA1C Silent p.D557D 0.42 TCGA-FF-8061-01 12 2797683 2797683 T C CACNA1C Missense_Mutation p.F2000S 0.38 tolerated_low_confidence(0.09) benign(0) TCGA-FF-8061-01 12 53443885 53443885 T C TENC1 Intron 0.12 TCGA-FF-8061-01 12 7556386 7556386 T C CD163L1 Missense_Mutation p.R385G 0.42 tolerated(0.06) possibly_damaging(0.777) TCGA-FF-8061-01 12 92539304 92539304 G C BTG1 Missense_Mutation p.P3R 0.45 deleterious_low_confidence(0.03) benign(0.057) TCGA-FF-8061-01 13 101287349 101287349 G A TMTC4 Missense_Mutation p.L435F 0.33 deleterious(0) possibly_damaging(0.749) TCGA-FF-8061-01 13 33316792 33316792 G A PDS5B Missense_Mutation p.G847R 0.31 deleterious(0) benign(0.139) TCGA-FF-8061-01 13 35782857 35782857 A G NBEA Missense_Mutation p.K1796R 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.488) TCGA-FF-8061-01 13 52345982 52345982 C T DHRS12 Missense_Mutation p.M227I 0.23 deleterious(0) benign(0.262) TCGA-FF-8061-01 13 58207600 58207600 G A PCDH17 Missense_Mutation p.G307D 0.22 deleterious(0.02) probably_damaging(0.956) TCGA-FF-8061-01 13 79219011 79219011 C G RNF219 Missense_Mutation p.C65S 0.25 deleterious(0) probably_damaging(0.996) TCGA-FF-8061-01 14 106054139 106054139 C T IGHA2 Missense_Mutation p.G127D 0.42 tolerated(0.07) benign(0.149) TCGA-FF-8061-01 14 106173564 106173564 T C IGHA1 Missense_Mutation p.K335E 0.11 deleterious(0) possibly_damaging(0.886) TCGA-FF-8061-01 14 106173582 106173582 T G IGHA1 Missense_Mutation p.I329L 0.16 tolerated(0.08) probably_damaging(0.919) TCGA-FF-8061-01 14 106173589 106173589 C T IGHA1 Silent p.Q326Q 0.18 TCGA-FF-8061-01 14 106209136 106209136 G A IGHG1 Silent p.N91N 0.67 TCGA-FF-8061-01 14 106209176 106209176 G A IGHG1 Missense_Mutation p.T78I 0.69 deleterious(0.01) benign(0.01) TCGA-FF-8061-01 14 106361493 106361493 G A IGHD3-16 Silent p.Y12Y 0.67 TCGA-FF-8061-01 14 107178871 107178871 T C IGHV2-70 Silent p.T102T 0.33 TCGA-FF-8061-01 14 107178892 107178892 G C IGHV2-70 Silent p.S95S 0.29 TCGA-FF-8061-01 14 107178960 107178960 C G IGHV2-70 Missense_Mutation p.D73H 0.44 tolerated(0.47) benign(0.131) TCGA-FF-8061-01 14 107179055 107179055 C A IGHV2-70 Missense_Mutation p.C41F 0.27 deleterious(0.01) probably_damaging(1) TCGA-FF-8061-01 14 107199081 107199081 T C IGHV3-72 Missense_Mutation p.T70A 0.31 deleterious_low_confidence(0) benign(0.02) TCGA-FF-8061-01 14 35871695 35871695 G A NFKBIA Nonsense_Mutation p.Q271* 0.26 TCGA-FF-8061-01 14 52509568 52509568 T C NID2 Missense_Mutation p.Y504C 0.37 deleterious(0) probably_damaging(0.998) TCGA-FF-8061-01 14 65053990 65053990 G A PPP1R36 Missense_Mutation p.G264R 0.47 deleterious(0) probably_damaging(0.996) TCGA-FF-8061-01 14 96180291 96180291 G A TCL1A Missense_Mutation p.T38I 0.53 tolerated(1) benign(0.014) TCGA-FF-8061-01 15 25969147 25969147 C T ATP10A Missense_Mutation p.R334Q 0.37 tolerated(0.5) benign(0.041) TCGA-FF-8061-01 15 32926229 32926229 A T ARHGAP11A Missense_Mutation p.N444I 0.20 deleterious(0.02) possibly_damaging(0.643) TCGA-FF-8061-01 15 40556998 40556998 G C PAK6 Missense_Mutation p.K4N 0.09 deleterious(0) probably_damaging(0.996) TCGA-FF-8061-01 15 45003779 45003779 T C B2M Missense_Mutation p.L12P 0.78 deleterious(0) possibly_damaging(0.505) TCGA-FF-8061-01 15 63017221 63017221 C T TLN2 Missense_Mutation p.T1058M 0.85 tolerated(0.32) benign(0.001) TCGA-FF-8061-01 15 75119053 75119053 C A CPLX3 Missense_Mutation p.F3L 0.84 deleterious(0.04) probably_damaging(0.989) TCGA-FF-8061-01 15 90143914 90143914 A G TICRR Silent p.R717R 0.04 TCGA-FF-8061-01 16 1878635 1878635 C A FAHD1 Intron 0.40 TCGA-FF-8061-01 16 20329589 20329589 A C GP2 Missense_Mutation p.F394V 0.20 deleterious(0) probably_damaging(0.99) TCGA-FF-8061-01 16 24183630 24183630 G A PRKCB Missense_Mutation p.D427N 0.35 tolerated(0.05) probably_damaging(0.97) TCGA-FF-8061-01 16 53730084 53730084 T G RPGRIP1L Missense_Mutation p.K70T 0.46 deleterious(0.02) benign(0.285) TCGA-FF-8061-01 16 72830766 72830766 C T ZFHX3 Missense_Mutation p.D1939N 0.37 probably_damaging(0.98) TCGA-FF-8061-01 16 83813610 83813610 A G CDH13 Missense_Mutation p.I620M 0.21 deleterious(0.01) possibly_damaging(0.89) TCGA-FF-8061-01 17 15519066 15519066 T G RP11-385D13.1 Missense_Mutation p.K498T 0.08 tolerated_low_confidence(0.33) benign(0.058) TCGA-FF-8061-01 17 29221631 29221635 TCTCT - ATAD5 Frame_Shift_Del p.L1785Cfs*3 0.33 TCGA-FF-8061-01 17 30932257 30932257 C A MYO1D Missense_Mutation p.L904F 0.43 tolerated(0.05) benign(0.078) TCGA-FF-8061-01 17 39872062 39872064 GAA - GAST In_Frame_Del p.E85del 0.13 TCGA-FF-8061-01 17 40474470 40474470 T C STAT3 Missense_Mutation p.Q644R 0.49 tolerated(0.82) possibly_damaging(0.867) TCGA-FF-8061-01 17 40474482 40474482 T A STAT3 Missense_Mutation p.Y640F 0.51 tolerated(0.24) probably_damaging(0.999) TCGA-FF-8061-01 17 6358850 6358850 G A PITPNM3 Silent p.H911H 0.33 TCGA-FF-8061-01 17 7155748 7155748 A G ELP5 5'UTR 0.28 TCGA-FF-8061-01 17 73552167 73552167 G A LLGL2 Missense_Mutation p.G39D 0.44 deleterious(0.04) probably_damaging(0.918) TCGA-FF-8061-01 17 76425210 76425210 C T DNAH17 Missense_Mutation p.D4127N 0.09 benign(0.32) TCGA-FF-8061-01 17 79479325 79479325 G A ACTG1 Missense_Mutation p.A19V 0.35 tolerated_low_confidence(0.05) probably_damaging(0.986) TCGA-FF-8061-01 18 24496139 24496139 C A CHST9 3'UTR 0.33 TCGA-FF-8061-01 18 61600364 61600364 T G SERPINB10 Missense_Mutation p.L239R 0.19 deleterious(0) probably_damaging(0.938) TCGA-FF-8061-01 18 77960661 77960661 T C PARD6G Missense_Mutation p.N76S 0.46 deleterious(0) probably_damaging(0.98) TCGA-FF-8061-01 19 14204559 14204559 G A PRKACA Missense_Mutation p.R271W 0.41 deleterious(0) probably_damaging(0.963) TCGA-FF-8061-01 19 14261777 14261777 G A LPHN1 Missense_Mutation p.R1445C 0.40 deleterious(0) probably_damaging(0.953) TCGA-FF-8061-01 19 1510692 1510692 C T ADAMTSL5 Missense_Mutation p.R46H 0.38 tolerated(0.55) benign(0.022) TCGA-FF-8061-01 19 17436125 17436125 T C ANO8 Missense_Mutation p.Q911R 0.42 deleterious(0.01) unknown(0) TCGA-FF-8061-01 19 2041911 2041911 G A MKNK2 Silent p.G291G 0.12 TCGA-FF-8061-01 19 31767371 31767371 A C TSHZ3 3'UTR 0.39 TCGA-FF-8061-01 19 38951156 38951156 G A RYR1 Silent p.R834R 0.49 TCGA-FF-8061-01 19 43708388 43708388 A C PSG4 Missense_Mutation p.F27C 0.39 deleterious(0.03) benign(0.013) TCGA-FF-8061-01 19 44570830 44570831 AG - ZNF223 Frame_Shift_Del p.K286Afs*5 0.24 TCGA-FF-8061-01 19 46191649 46191649 C T SNRPD2 Missense_Mutation p.D60N 0.38 deleterious(0.02) possibly_damaging(0.491) TCGA-FF-8061-01 19 49132849 49132849 T G SPHK2 Missense_Mutation p.L595R 0.22 tolerated(0.13) benign(0.058) TCGA-FF-8061-01 19 50063941 50063941 C T NOSIP Missense_Mutation p.R3Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-FF-8061-01 19 53950528 53950528 T G ZNF761 RNA 0.38 TCGA-FF-8061-01 19 6714453 6714453 G A C3 Missense_Mutation p.P170L 0.42 deleterious(0) probably_damaging(0.999) TCGA-FF-8061-01 1 149857830 149857830 T C HIST2H2BE Missense_Mutation p.K121E 0.33 deleterious_low_confidence(0.01) benign(0.024) TCGA-FF-8061-01 1 161071920 161071920 T G PFDN2 Missense_Mutation p.K69T 0.08 deleterious(0) probably_damaging(0.964) TCGA-FF-8061-01 1 162762628 162762628 G A HSD17B7 Missense_Mutation p.R72Q 0.39 tolerated(0.35) benign(0.009) TCGA-FF-8061-01 1 196648799 196648799 T C CFH Silent p.S222S 0.33 TCGA-FF-8061-01 1 203276256 203276256 C T BTG2 Missense_Mutation p.P56L 0.37 deleterious(0) probably_damaging(1) TCGA-FF-8061-01 1 208216497 208216497 C T PLXNA2 Missense_Mutation p.R1309H 0.32 deleterious(0) probably_damaging(0.976) TCGA-FF-8061-01 1 21031010 21031010 G A KIF17 Silent p.R351R 0.33 TCGA-FF-8061-01 1 216348549 216348549 T G USH2A Intron 0.33 TCGA-FF-8061-01 1 27755436 27755436 A C WASF2 5'UTR 0.43 TCGA-FF-8061-01 1 32149326 32149326 C T COL16A1 Silent p.R787R 0.41 TCGA-FF-8061-01 1 32164126 32164126 C T COL16A1 Silent p.T116T 0.08 TCGA-FF-8061-01 1 32946622 32946622 C T ZBTB8B Silent p.C374C 0.33 TCGA-FF-8061-01 1 72748277 72748277 A C NEGR1 5'UTR 0.54 TCGA-FF-8061-01 1 97548004 97548004 T C DPYD Missense_Mutation p.Q930R 0.41 tolerated(0.16) benign(0.001) TCGA-FF-8061-01 20 2473385 2473385 T - ZNF343 Frame_Shift_Del p.E89Kfs*2 0.10 TCGA-FF-8061-01 20 61594979 61594979 A G SLC17A9 Missense_Mutation p.I257V 0.49 tolerated(0.67) benign(0.007) TCGA-FF-8061-01 21 28327094 28327094 C T ADAMTS5 Missense_Mutation p.G401S 0.25 deleterious(0) probably_damaging(1) TCGA-FF-8061-01 21 35190669 35190669 C T ITSN1 Silent p.V942V 0.42 TCGA-FF-8061-01 22 21062081 21062081 T G PI4KA 3'UTR 0.38 TCGA-FF-8061-01 22 21062323 21062323 A C PI4KA 3'UTR 0.42 TCGA-FF-8061-01 22 23029605 23029605 C T IGLV3-25 Silent p.D69D 0.32 TCGA-FF-8061-01 22 23214040 23214040 T A IGLV4-3 Missense_Mutation p.I66K 0.48 deleterious(0) benign(0.159) TCGA-FF-8061-01 22 23230279 23230279 C T IGLL5 Silent p.L16L 0.38 TCGA-FF-8061-01 22 23230311 23230311 G A IGLL5 Silent p.L26L 0.42 TCGA-FF-8061-01 22 23230312 23230312 C G IGLL5 Missense_Mutation p.L27V 0.38 tolerated_low_confidence(0.15) benign(0.032) TCGA-FF-8061-01 22 23230315 23230315 C T IGLL5 Silent p.L28L 0.39 TCGA-FF-8061-01 22 23230346 23230346 T G IGLL5 Missense_Mutation p.L38R 0.41 tolerated_low_confidence(0.74) benign(0.019) TCGA-FF-8061-01 22 23230347 23230347 G C IGLL5 Silent p.L38L 0.39 TCGA-FF-8061-01 22 23230364 23230364 C A IGLL5 Missense_Mutation p.A44E 0.36 deleterious_low_confidence(0.01) benign(0.326) TCGA-FF-8061-01 22 23230402 23230402 G A IGLL5 Missense_Mutation p.G57R 0.41 deleterious_low_confidence(0.01) benign(0.019) TCGA-FF-8061-01 22 23230412 23230412 G C IGLL5 Missense_Mutation p.R60P 0.43 tolerated_low_confidence(0.3) benign(0.001) TCGA-FF-8061-01 22 26422889 26422889 G A MYO18B Missense_Mutation p.A2317T 0.29 tolerated(0.73) benign(0.004) TCGA-FF-8061-01 22 42463804 42463804 G T NAGA Missense_Mutation p.R97S 0.39 deleterious(0) probably_damaging(0.999) TCGA-FF-8061-01 2 128263223 128263223 C T IWS1 Missense_Mutation p.E86K 0.32 tolerated_low_confidence(0.59) benign(0.037) TCGA-FF-8061-01 2 135102520 135102520 G A MGAT5 Missense_Mutation p.G333R 0.34 tolerated(0.06) possibly_damaging(0.576) TCGA-FF-8061-01 2 152470904 152470904 C T NEB Silent p.K3829K 0.39 TCGA-FF-8061-01 2 185463692 185463692 G A ZNF804A Silent p.E2E 0.45 TCGA-FF-8061-01 2 189849577 189849577 A G COL3A1 Silent p.S57S 0.34 TCGA-FF-8061-01 2 207174869 207174869 A G ZDBF2 Missense_Mutation p.K1873E 0.32 tolerated(1) benign(0.292) TCGA-FF-8061-01 2 216289966 216289966 G A FN1 Missense_Mutation p.P296L 0.33 deleterious(0) benign(0.135) TCGA-FF-8061-01 2 218939 218939 C T SH3YL1 Missense_Mutation p.D301N 0.45 deleterious(0) probably_damaging(0.999) TCGA-FF-8061-01 2 232389859 232389859 C T NMUR1 Missense_Mutation p.M392I 0.39 tolerated(0.06) benign(0.001) TCGA-FF-8061-01 2 71148327 71148327 G A VAX2 Missense_Mutation p.R116H 0.34 deleterious(0.02) benign(0.103) TCGA-FF-8061-01 2 74756500 74756500 G A AUP1 Silent p.S59S 0.76 TCGA-FF-8061-01 2 84785000 84785000 A G DNAH6 Missense_Mutation p.S582G 0.33 deleterious(0.03) benign(0.003) TCGA-FF-8061-01 2 89160408 89160408 C T IGKJ4 Silent p.V9V 0.53 TCGA-FF-8061-01 2 89161484 89161484 A G IGKC 5'Flank 0.60 TCGA-FF-8061-01 2 89161486 89161486 A G IGKC 5'Flank 0.61 TCGA-FF-8061-01 2 89246957 89246957 A C IGKV1-5 Nonsense_Mutation p.Y71* 0.29 TCGA-FF-8061-01 2 89246976 89246976 G A IGKV1-5 Missense_Mutation p.A65V 0.37 tolerated(0.08) benign(0.109) TCGA-FF-8061-01 2 96809900 96809900 G C DUSP2 Silent p.G241G 0.43 TCGA-FF-8061-01 2 96810590 96810590 G C DUSP2 Silent p.P140P 0.47 TCGA-FF-8061-01 2 98340878 98340878 G A ZAP70 Missense_Mutation p.V127M 0.50 tolerated(0.05) possibly_damaging(0.584) TCGA-FF-8061-01 3 111312927 111312927 G A ZBED2 Missense_Mutation p.A41V 0.41 tolerated_low_confidence(0.09) benign(0.211) TCGA-FF-8061-01 3 13379381 13379381 C T NUP210 Missense_Mutation p.V1170M 0.41 deleterious(0) possibly_damaging(0.679) TCGA-FF-8061-01 3 155205862 155205862 T G PLCH1 Missense_Mutation p.E846D 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-FF-8061-01 3 185797673 185797673 G A ETV5 Nonsense_Mutation p.R195* 0.43 TCGA-FF-8061-01 3 49757994 49757994 G A RNF123 Missense_Mutation p.R1184H 0.39 tolerated(0.26) benign(0.003) TCGA-FF-8061-01 3 85932591 85932591 T G CADM2 Missense_Mutation p.L123R 0.35 deleterious(0) probably_damaging(0.995) TCGA-FF-8061-01 4 106193850 106193850 A T TET2 Nonsense_Mutation p.K1438* 0.84 TCGA-FF-8061-01 4 156135863 156135863 C T NPY2R Missense_Mutation p.H258Y 0.40 deleterious(0.03) possibly_damaging(0.516) TCGA-FF-8061-01 4 156634257 156634257 A G GUCY1A3 Missense_Mutation p.D365G 0.33 deleterious(0.05) possibly_damaging(0.791) TCGA-FF-8061-01 4 157689051 157689051 T A PDGFC Missense_Mutation p.R265S 0.40 tolerated(0.18) probably_damaging(0.909) TCGA-FF-8061-01 4 22820604 22820604 G A GBA3 3'UTR 0.29 TCGA-FF-8061-01 4 5868477 5868477 G A CRMP1 Nonsense_Mutation p.R130* 0.30 TCGA-FF-8061-01 4 94376883 94376883 G A GRID2 Missense_Mutation p.R539H 0.35 deleterious(0.01) probably_damaging(1) TCGA-FF-8061-01 4 98893436 98893436 A C STPG2 Missense_Mutation p.Y310D 0.38 deleterious(0) probably_damaging(1) TCGA-FF-8061-01 5 140236835 140236835 A G PCDHA10 Missense_Mutation p.K401R 0.41 tolerated_low_confidence(0.12) benign(0.248) TCGA-FF-8061-01 6 117248414 117248414 C T RFX6 Nonsense_Mutation p.Q704* 0.48 TCGA-FF-8061-01 6 134494230 134494230 C A SGK1 Silent p.V255V 0.14 TCGA-FF-8061-01 6 134495755 134495755 G A SGK1 Intron 0.55 TCGA-FF-8061-01 6 152679666 152679666 C T SYNE1 Missense_Mutation p.V3484I 0.29 benign(0.017) TCGA-FF-8061-01 6 18249894 18249894 T G DEK Missense_Mutation p.E250D 0.35 tolerated(0.32) possibly_damaging(0.899) TCGA-FF-8061-01 6 26056233 26056233 C T HIST1H1C Missense_Mutation p.A142T 0.05 tolerated(0.77) unknown(0) TCGA-FF-8061-01 6 26124422 26124422 G A HIST1H2AC 5'Flank 0.41 TCGA-FF-8061-01 6 26250408 26250408 C T HIST1H3F 3'UTR 0.16 TCGA-FF-8061-01 6 27834991 27834991 C G HIST1H1B Missense_Mutation p.G106A 0.42 deleterious(0) probably_damaging(0.986) TCGA-FF-8061-01 6 27861622 27861622 G A HIST1H2BO 3'UTR 0.23 TCGA-FF-8061-01 6 28500106 28500106 G A GPX5 Missense_Mutation p.R123H 0.79 deleterious(0) probably_damaging(0.994) TCGA-FF-8061-01 6 35754842 35754842 A G CLPSL1 Missense_Mutation p.N56S 0.26 tolerated(0.57) benign(0.02) TCGA-FF-8061-01 6 37138355 37138355 C T PIM1 Missense_Mutation p.L2F 0.31 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-FF-8061-01 6 37138424 37138424 C T PIM1 Silent p.L25L 0.27 TCGA-FF-8061-01 6 44229533 44229533 A T NFKBIE Missense_Mutation p.L313Q 0.44 deleterious(0) probably_damaging(1) TCGA-FF-8061-01 6 55147247 55147247 T G HCRTR2 Missense_Mutation p.W444G 0.27 deleterious_low_confidence(0) benign(0.054) TCGA-FF-8061-01 6 55922465 55922465 G A COL21A1 Missense_Mutation p.P955L 0.14 deleterious(0) unknown(0) TCGA-FF-8061-01 6 80744802 80744802 T A TTK Missense_Mutation p.I572K 0.39 deleterious(0) probably_damaging(0.998) TCGA-FF-8061-01 6 83898451 83898451 C T PGM3 Missense_Mutation p.A119T 0.38 deleterious(0) probably_damaging(0.987) TCGA-FF-8061-01 7 110303640 110303640 T C IMMP2L 3'UTR 0.41 TCGA-FF-8061-01 7 122338692 122338692 C T RNF133 Missense_Mutation p.R94Q 0.36 tolerated(0.45) benign(0.032) TCGA-FF-8061-01 7 133848158 133848158 C G LRGUK Missense_Mutation p.Q269E 0.33 tolerated(0.08) benign(0.049) TCGA-FF-8061-01 7 153584693 153584693 T C DPP6 5'UTR 0.20 TCGA-FF-8061-01 7 157178346 157178346 C T DNAJB6 Intron 0.13 TCGA-FF-8061-01 7 2977605 2977605 A G CARD11 Missense_Mutation p.M360T 0.46 deleterious(0) probably_damaging(0.997) TCGA-FF-8061-01 7 35937935 35937935 A G SEPT7 Missense_Mutation p.Q360R 0.35 tolerated(0.1) benign(0.067) TCGA-FF-8061-01 7 82545106 82545106 A G PCLO Missense_Mutation p.F4066L 0.39 unknown(0) TCGA-FF-8061-01 7 91625060 91625060 A C AKAP9 Missense_Mutation p.E292D 0.39 possibly_damaging(0.45) TCGA-FF-8061-01 7 91625117 91625117 A C AKAP9 Intron 0.31 TCGA-FF-8061-01 8 143625724 143625724 C T BAI1 Silent p.G1567G 0.47 TCGA-FF-8061-01 8 24771637 24771637 C T NEFM Missense_Mutation p.R111C 0.06 deleterious(0.01) unknown(0) TCGA-FF-8061-01 8 56910951 56910951 G A LYN Missense_Mutation p.R366Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-FF-8061-01 8 62289218 62289218 C T CLVS1 Silent p.I170I 0.34 TCGA-FF-8061-01 8 67525090 67525090 A T MYBL1 5'UTR 0.47 TCGA-FF-8061-01 9 108297595 108297595 T C FSD1L Silent p.D458D 0.24 TCGA-FF-8061-01 9 6413558 6413558 C G UHRF2 Missense_Mutation p.A23G 0.26 deleterious(0) possibly_damaging(0.451) TCGA-FF-8061-01 9 731215 731215 A G KANK1 Missense_Mutation p.K985R 0.47 tolerated(0.24) benign(0.003) TCGA-FF-8061-01 9 84533281 84533281 A C SPATA31D5P RNA 0.33 TCGA-FF-8061-01 X 101858323 101858323 G A ARMCX5 Silent p.G418G 0.12 TCGA-FF-8061-01 X 1584585 1584585 G T P2RY8 Missense_Mutation p.D289E 0.36 deleterious(0) probably_damaging(0.995) TCGA-FF-8061-01 X 1585217 1585217 G T P2RY8 Missense_Mutation p.Q79K 0.40 deleterious(0.01) probably_damaging(0.981) TCGA-FF-8061-01 X 78216808 78216808 T - P2RY10 Frame_Shift_Del p.Y266Tfs*4 0.47 TCGA-FF-A7CQ-01 10 119133946 119133946 G A PDZD8 Missense_Mutation p.P265S 0.20 tolerated(0.15) benign(0.062) TCGA-FF-A7CQ-01 10 119133982 119133982 A G PDZD8 Missense_Mutation p.F253L 0.17 tolerated(0.26) benign(0.021) TCGA-FF-A7CQ-01 10 120824953 120824953 A C EIF3A Silent p.G360G 0.27 TCGA-FF-A7CQ-01 10 55663021 55663021 A G PCDH15 Silent p.T1161T 0.24 TCGA-FF-A7CQ-01 10 63519871 63519871 G A C10orf107 Missense_Mutation p.E115K 0.35 deleterious(0) probably_damaging(0.986) TCGA-FF-A7CQ-01 10 85982130 85982130 G A LRIT2 Missense_Mutation p.S400L 0.24 tolerated(0.67) benign(0.006) TCGA-FF-A7CQ-01 10 95721161 95721161 T G PIPSL RNA 0.27 TCGA-FF-A7CQ-01 11 11863667 11863667 G A USP47 5'UTR 0.06 TCGA-FF-A7CQ-01 11 132399025 132399025 A C OPCML Missense_Mutation p.S152R 0.19 deleterious(0) possibly_damaging(0.456) TCGA-FF-A7CQ-01 11 56057645 56057645 A T OR8H1 Missense_Mutation p.N298K 0.23 tolerated(0.3) benign(0.007) TCGA-FF-A7CQ-01 11 58978697 58978697 C T MPEG1 Missense_Mutation p.D548N 0.24 tolerated(0.06) benign(0.02) TCGA-FF-A7CQ-01 11 58980009 58980009 G A MPEG1 Silent p.S110S 0.34 TCGA-FF-A7CQ-01 11 70332437 70332437 C T SHANK2 Missense_Mutation p.A1322T 0.30 tolerated(0.41) possibly_damaging(0.499) TCGA-FF-A7CQ-01 11 726654 726655 - GCTC EPS8L2 Frame_Shift_Ins p.F659Afs*113 0.24 TCGA-FF-A7CQ-01 11 92703057 92703057 G A MTNR1B Missense_Mutation p.V56M 0.20 deleterious(0.02) benign(0.144) TCGA-FF-A7CQ-01 12 11286093 11286093 T G TAS2R30 Missense_Mutation p.N251H 0.23 tolerated(0.36) benign(0.011) TCGA-FF-A7CQ-01 12 122248130 122248130 G T SETD1B Nonsense_Mutation p.E427* 0.23 TCGA-FF-A7CQ-01 12 130649539 130649539 C G FZD10 3'UTR 0.34 TCGA-FF-A7CQ-01 12 26810975 26810975 G A ITPR2 Missense_Mutation p.P659S 0.23 tolerated(0.17) benign(0.256) TCGA-FF-A7CQ-01 12 64485076 64485076 A C SRGAP1 Missense_Mutation p.K486T 0.18 tolerated(0.14) benign(0.002) TCGA-FF-A7CQ-01 13 38158888 38158888 A G POSTN Missense_Mutation p.I358T 0.26 deleterious(0) possibly_damaging(0.665) TCGA-FF-A7CQ-01 13 42876626 42876626 C A AKAP11 Silent p.P1248P 0.26 TCGA-FF-A7CQ-01 13 96743654 96743654 G A HS6ST3 Missense_Mutation p.G180S 0.41 deleterious(0.02) possibly_damaging(0.734) TCGA-FF-A7CQ-01 14 106109656 106109656 G A IGHG2 Missense_Mutation p.L289F 0.27 deleterious(0.05) probably_damaging(0.997) TCGA-FF-A7CQ-01 14 106109791 106109791 G A IGHG2 Silent p.L244L 0.27 TCGA-FF-A7CQ-01 14 106109815 106109815 C T IGHG2 Missense_Mutation p.E236K 0.24 deleterious(0) probably_damaging(0.978) TCGA-FF-A7CQ-01 14 106109956 106109958 CCA - IGHG2 Splice_Site p.X220_splice 0.15 TCGA-FF-A7CQ-01 14 106110075 106110075 C A IGHG2 Silent p.V181V 0.25 TCGA-FF-A7CQ-01 14 106110096 106110096 C T IGHG2 Silent p.Q174Q 0.19 TCGA-FF-A7CQ-01 14 106110105 106110105 C T IGHG2 Silent p.R171R 0.19 TCGA-FF-A7CQ-01 14 106110139 106110139 C T IGHG2 Missense_Mutation p.G160D 0.17 tolerated(0.46) benign(0.292) TCGA-FF-A7CQ-01 14 106110232 106110232 G A IGHG2 Missense_Mutation p.T129I 0.37 tolerated(0.37) benign(0.093) TCGA-FF-A7CQ-01 14 106110286 106110286 G A IGHG2 Missense_Mutation p.A111V 0.26 tolerated(0.21) benign(0.132) TCGA-FF-A7CQ-01 14 106208006 106208006 C T IGHG1 Missense_Mutation p.S266N 0.29 tolerated(0.48) benign(0.034) TCGA-FF-A7CQ-01 14 106208289 106208289 C T IGHG1 Missense_Mutation p.C204Y 0.19 deleterious(0.01) probably_damaging(1) TCGA-FF-A7CQ-01 14 106208297 106208297 C T IGHG1 Silent p.E201E 0.31 TCGA-FF-A7CQ-01 14 106208321 106208321 G T IGHG1 Missense_Mutation p.H193Q 0.31 tolerated(0.06) possibly_damaging(0.558) TCGA-FF-A7CQ-01 14 106208417 106208417 G A IGHG1 Silent p.Y161Y 0.40 TCGA-FF-A7CQ-01 14 106208512 106208512 G A IGHG1 Missense_Mutation p.P130S 0.29 deleterious(0.01) possibly_damaging(0.868) TCGA-FF-A7CQ-01 14 106321192 106321192 G A IGHM Missense_Mutation p.A266V 0.28 tolerated(0.29) benign(0.01) TCGA-FF-A7CQ-01 14 106321856 106321856 G T IGHM Missense_Mutation p.N126K 0.34 tolerated(0.9) benign(0.075) TCGA-FF-A7CQ-01 14 106322027 106322027 C A IGHM Missense_Mutation p.K99N 0.33 deleterious(0.01) benign(0.026) TCGA-FF-A7CQ-01 14 106322171 106322171 G A IGHM Silent p.S51S 0.36 TCGA-FF-A7CQ-01 14 106322183 106322183 G A IGHM Silent p.N47N 0.37 TCGA-FF-A7CQ-01 14 106322266 106322266 C T IGHM Missense_Mutation p.D20N 0.36 deleterious(0.01) benign(0.442) TCGA-FF-A7CQ-01 14 106830009 106830009 A G IGHV4-34 Missense_Mutation p.F13L 0.33 tolerated(0.88) benign(0.037) TCGA-FF-A7CQ-01 14 107170130 107170130 T G IGHV1-69 Missense_Mutation p.Y51S 0.30 tolerated(0.07) benign(0.076) TCGA-FF-A7CQ-01 14 107178833 107178833 T G IGHV2-70 Missense_Mutation p.Y115S 0.18 deleterious(0) probably_damaging(0.997) TCGA-FF-A7CQ-01 14 107178904 107178904 G A IGHV2-70 Silent p.S91S 0.14 TCGA-FF-A7CQ-01 14 107178923 107178932 TTCAGAGATG - IGHV2-70 Frame_Shift_Del p.T82Rfs*19 0.11 TCGA-FF-A7CQ-01 14 107178970 107178970 A G IGHV2-70 Silent p.L69L 0.13 TCGA-FF-A7CQ-01 14 107179004 107179004 A C IGHV2-70 Missense_Mutation p.I58S 0.19 deleterious(0) probably_damaging(0.968) TCGA-FF-A7CQ-01 14 107179077 107179093 TGGGTTTCACCAGCGCA C IGHV2-70 Frame_Shift_Del p.A29Hfs*6 0.11 TCGA-FF-A7CQ-01 14 107179234 107179234 A T IGHV2-70 Missense_Mutation p.L10Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-FF-A7CQ-01 14 45535938 45535938 A G FAM179B Missense_Mutation p.N1520D 0.29 deleterious(0) probably_damaging(0.92) TCGA-FF-A7CQ-01 14 61857975 61857975 G T PRKCH Silent p.V132V 0.26 TCGA-FF-A7CQ-01 15 23889331 23889331 G A MAGEL2 Nonsense_Mutation p.R584* 0.30 TCGA-FF-A7CQ-01 15 48451861 48451861 G A MYEF2 Silent p.V222V 0.24 TCGA-FF-A7CQ-01 15 68583506 68583506 G A FEM1B Missense_Mutation p.A604T 0.25 tolerated(0.13) possibly_damaging(0.867) TCGA-FF-A7CQ-01 16 55736364 55736364 G A SLC6A2 Intron 0.32 TCGA-FF-A7CQ-01 16 89261552 89261552 C T CDH15 Missense_Mutation p.R812W 0.21 deleterious_low_confidence(0) benign(0) TCGA-FF-A7CQ-01 16 89777233 89777233 G T VPS9D1 Missense_Mutation p.P340H 0.07 tolerated(0.15) possibly_damaging(0.808) TCGA-FF-A7CQ-01 17 17398586 17398586 G A RASD1 Silent p.G233G 0.28 TCGA-FF-A7CQ-01 17 39114733 39114733 G A KRT39 3'UTR 0.36 TCGA-FF-A7CQ-01 17 39316419 39316419 G T KRTAP4-4 3'UTR 0.22 TCGA-FF-A7CQ-01 17 46847276 46847276 T C TTLL6 Missense_Mutation p.K742E 0.28 deleterious(0.01) possibly_damaging(0.487) TCGA-FF-A7CQ-01 17 61833644 61833644 G C CCDC47 Missense_Mutation p.L302V 0.23 tolerated(0.07) possibly_damaging(0.773) TCGA-FF-A7CQ-01 17 62006798 62006798 T C CD79B Missense_Mutation p.Y197C 0.32 deleterious(0) probably_damaging(1) TCGA-FF-A7CQ-01 17 62007630 62007635 CCAGAG - CD79B In_Frame_Del p.L78_W79del 0.23 TCGA-FF-A7CQ-01 17 73727034 73727034 G A ITGB4 Missense_Mutation p.E361K 0.22 tolerated(0.24) benign(0.084) TCGA-FF-A7CQ-01 17 8012556 8012556 C T ALOXE3 Missense_Mutation p.V632I 0.30 deleterious(0.03) benign(0.181) TCGA-FF-A7CQ-01 18 2732488 2732491 AAAG - SMCHD1 Splice_Site p.X1092_splice 0.10 TCGA-FF-A7CQ-01 18 30350266 30350266 G A KLHL14 Nonsense_Mutation p.Q97* 0.18 TCGA-FF-A7CQ-01 18 30350287 30350287 G A KLHL14 Nonsense_Mutation p.Q90* 0.43 TCGA-FF-A7CQ-01 18 30950118 30950118 G A CCDC178 Nonsense_Mutation p.R82* 0.31 TCGA-FF-A7CQ-01 18 3451989 3451989 G A TGIF1 Silent p.A4A 0.13 TCGA-FF-A7CQ-01 18 57567401 57567401 C T PMAIP1 5'UTR 0.15 TCGA-FF-A7CQ-01 18 59203733 59203733 A C CDH20 Missense_Mutation p.I427L 0.17 tolerated(0.15) benign(0.223) TCGA-FF-A7CQ-01 18 63527021 63527021 T C CDH7 Silent p.D524D 0.11 TCGA-FF-A7CQ-01 19 11289041 11289041 C T KANK2 Silent p.Q508Q 0.23 TCGA-FF-A7CQ-01 19 17081795 17081795 G A CPAMD8 Nonsense_Mutation p.Q754* 0.28 TCGA-FF-A7CQ-01 19 19261528 19261529 - T MEF2B Frame_Shift_Ins p.I6Nfs*29 0.27 TCGA-FF-A7CQ-01 19 4328706 4328706 C T STAP2 Missense_Mutation p.G186S 0.30 tolerated(0.6) benign(0.046) TCGA-FF-A7CQ-01 19 47524904 47524904 C T NPAS1 Missense_Mutation p.A53V 0.14 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CQ-01 19 48613796 48613796 A T PLA2G4C 5'UTR 0.24 TCGA-FF-A7CQ-01 19 50753007 50753007 G A MYH14 Missense_Mutation p.R528H 0.30 deleterious(0) probably_damaging(0.988) TCGA-FF-A7CQ-01 19 51841333 51841333 A G VSIG10L Missense_Mutation p.L620P 0.22 deleterious(0) probably_damaging(0.982) TCGA-FF-A7CQ-01 19 53740528 53740528 C G ZNF677 Missense_Mutation p.E484D 0.32 deleterious(0.02) benign(0.274) TCGA-FF-A7CQ-01 19 55593906 55593906 G A EPS8L1 Missense_Mutation p.D384N 0.22 tolerated(0.06) benign(0.014) TCGA-FF-A7CQ-01 19 56244737 56244737 C T NLRP9 Missense_Mutation p.D154N 0.29 tolerated(0.07) possibly_damaging(0.601) TCGA-FF-A7CQ-01 19 6016117 6016117 G A RFX2 Missense_Mutation p.R255W 0.29 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CQ-01 19 8046064 8046064 C T ELAVL1 Missense_Mutation p.S60N 0.28 tolerated(0.06) possibly_damaging(0.874) TCGA-FF-A7CQ-01 19 8993393 8993393 C A MUC16 Missense_Mutation p.R13899M 0.24 probably_damaging(0.998) TCGA-FF-A7CQ-01 19 9226244 9226244 G C OR7G1 Missense_Mutation p.L66V 0.30 deleterious(0) probably_damaging(0.997) TCGA-FF-A7CQ-01 1 101200181 101200181 C T VCAM1 Missense_Mutation p.A639V 0.29 tolerated(0.16) benign(0.179) TCGA-FF-A7CQ-01 1 117087138 117087139 CT - CD58 Frame_Shift_Del p.E53Gfs*9 0.26 TCGA-FF-A7CQ-01 1 182026466 182026466 G A ZNF648 Missense_Mutation p.A227V 0.32 tolerated(0.16) benign(0.003) TCGA-FF-A7CQ-01 1 196451484 196451484 T A KCNT2 Missense_Mutation p.S101C 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-FF-A7CQ-01 1 203276261 203276261 A C BTG2 Missense_Mutation p.K58Q 0.26 tolerated(0.05) benign(0.054) TCGA-FF-A7CQ-01 1 214557523 214557523 G A PTPN14 Missense_Mutation p.L559F 0.22 tolerated(0.1) probably_damaging(0.999) TCGA-FF-A7CQ-01 1 220326665 220326665 G A RAB3GAP2 Silent p.P1243P 0.26 TCGA-FF-A7CQ-01 1 220752788 220752788 G A MARK1 Silent p.T48T 0.27 TCGA-FF-A7CQ-01 1 248112303 248112303 C G OR2L8 Missense_Mutation p.I48M 0.27 deleterious(0) probably_damaging(1) TCGA-FF-A7CQ-01 1 2527447 2527447 C A MMEL1 Splice_Site p.X500_splice 0.25 TCGA-FF-A7CQ-01 1 33363889 33363889 C T TMEM54 Silent p.V16V 0.30 TCGA-FF-A7CQ-01 1 70501838 70501838 T C LRRC7 Missense_Mutation p.I639T 0.29 deleterious(0) benign(0.285) TCGA-FF-A7CQ-01 20 13280121 13280121 G A ISM1 3'UTR 0.33 TCGA-FF-A7CQ-01 20 22562836 22562836 C T FOXA2 Silent p.Q348Q 0.27 TCGA-FF-A7CQ-01 20 34458897 34458897 T G PHF20 Missense_Mutation p.Y315D 0.27 tolerated(0.2) benign(0.024) TCGA-FF-A7CQ-01 20 37524343 37524343 C G PPP1R16B Missense_Mutation p.L153V 0.30 deleterious(0) benign(0.317) TCGA-FF-A7CQ-01 20 8130945 8130945 C A PLCB1 Nonsense_Mutation p.S35* 0.23 TCGA-FF-A7CQ-01 21 28214839 28214839 C A ADAMTS1 Missense_Mutation p.R299L 0.29 tolerated(0.48) probably_damaging(0.975) TCGA-FF-A7CQ-01 22 17601344 17601344 A T CECR6 Missense_Mutation p.L225Q 0.24 deleterious(0) unknown(0) TCGA-FF-A7CQ-01 22 22517045 22517045 T C IGLV4-60 Silent p.Y111Y 0.18 TCGA-FF-A7CQ-01 22 23029473 23029473 G A IGLV3-25 Silent p.Q25Q 0.37 TCGA-FF-A7CQ-01 22 23101439 23101439 G A IGLV2-14 Silent p.G31G 0.14 TCGA-FF-A7CQ-01 22 23101479 23101479 A G IGLV2-14 Missense_Mutation p.S45G 0.08 deleterious_low_confidence(0) benign(0.061) TCGA-FF-A7CQ-01 22 23223297 23223297 C G IGLV3-1 Missense_Mutation p.L23V 0.34 tolerated(0.08) benign(0.316) TCGA-FF-A7CQ-01 22 23223364 23223364 A C IGLV3-1 Missense_Mutation p.K45T 0.50 tolerated(0.05) benign(0.009) TCGA-FF-A7CQ-01 22 23223439 23223439 G C IGLV3-1 Missense_Mutation p.S70T 0.35 tolerated(0.13) benign(0.008) TCGA-FF-A7CQ-01 22 23230078 23230078 G A IGLL5 5'UTR 0.38 TCGA-FF-A7CQ-01 22 23230278 23230278 G A IGLL5 Silent p.E15E 0.33 TCGA-FF-A7CQ-01 22 23230279 23230279 C T IGLL5 Silent p.L16L 0.32 TCGA-FF-A7CQ-01 22 23235883 23235887 CCTGC TGG IGLL5 Frame_Shift_Del p.L71Gfs*20 0.53 TCGA-FF-A7CQ-01 22 23243594 23243594 A C IGLC2 3'UTR 0.18 TCGA-FF-A7CQ-01 22 23248780 23248780 G A IGLC3 Silent p.T90T 0.13 TCGA-FF-A7CQ-01 22 25603042 25603042 C T CRYBB3 Missense_Mutation p.R167C 0.25 deleterious(0.02) benign(0.294) TCGA-FF-A7CQ-01 22 30951371 30951371 G A GAL3ST1 Missense_Mutation p.R281C 0.32 deleterious(0) probably_damaging(1) TCGA-FF-A7CQ-01 22 50720155 50720155 T A PLXNB2 Missense_Mutation p.K1121M 0.25 tolerated(0.16) probably_damaging(0.944) TCGA-FF-A7CQ-01 2 131799003 131799003 C T ARHGEF4 Silent p.A435A 0.24 TCGA-FF-A7CQ-01 2 192700851 192700851 G A SDPR Missense_Mutation p.A359V 0.27 tolerated_low_confidence(0.27) benign(0.004) TCGA-FF-A7CQ-01 2 210690724 210690724 G A UNC80 Missense_Mutation p.G809R 0.29 probably_damaging(0.999) TCGA-FF-A7CQ-01 2 210694100 210694100 G A UNC80 Missense_Mutation p.D875N 0.30 probably_damaging(0.991) TCGA-FF-A7CQ-01 2 216257691 216257691 G A FN1 Silent p.G1344G 0.25 TCGA-FF-A7CQ-01 2 234363499 234363499 T A DGKD Missense_Mutation p.D785E 0.18 tolerated(1) benign(0.054) TCGA-FF-A7CQ-01 2 74756626 74756626 C T AUP1 Silent p.R17R 0.21 TCGA-FF-A7CQ-01 2 97531445 97531445 G A SEMA4C Silent p.Y126Y 0.29 TCGA-FF-A7CQ-01 3 101578253 101578258 TCAGTT AC NFKBIZ 3'UTR 0.14 TCGA-FF-A7CQ-01 3 133648274 133648274 C A C3orf36 5'UTR 0.24 TCGA-FF-A7CQ-01 3 152553518 152553518 C A P2RY1 5'UTR 0.36 TCGA-FF-A7CQ-01 3 190105902 190105902 T G CLDN16 5'UTR 0.32 TCGA-FF-A7CQ-01 3 19974810 19974810 C T EFHB Missense_Mutation p.G234E 0.32 tolerated_low_confidence(1) benign(0) TCGA-FF-A7CQ-01 3 32022624 32022624 G A OSBPL10 Silent p.S16S 0.34 TCGA-FF-A7CQ-01 3 33135725 33135725 G A TMPPE 5'UTR 0.30 TCGA-FF-A7CQ-01 3 49050373 49050373 C T WDR6 Missense_Mutation p.A499V 0.25 tolerated(0.62) benign(0.041) TCGA-FF-A7CQ-01 3 51315142 51315142 C T DOCK3 Missense_Mutation p.A927V 0.24 tolerated(0.05) benign(0.266) TCGA-FF-A7CQ-01 3 97607289 97607289 C T CRYBG3 Missense_Mutation p.P517L 0.19 deleterious(0.01) possibly_damaging(0.532) TCGA-FF-A7CQ-01 4 103720570 103720570 C T UBE2D3 Missense_Mutation p.R133K 0.27 tolerated_low_confidence(0.14) benign(0.002) TCGA-FF-A7CQ-01 4 106621116 106621116 G A INTS12 Missense_Mutation p.A16V 0.25 deleterious(0) probably_damaging(0.992) TCGA-FF-A7CQ-01 4 126242688 126242688 G A FAT4 Missense_Mutation p.D1708N 0.21 benign(0.269) TCGA-FF-A7CQ-01 4 1326571 1326571 C T MAEA Missense_Mutation p.A228V 0.33 tolerated(0.5) benign(0.101) TCGA-FF-A7CQ-01 4 149002555 149002555 G A NR3C2 Silent p.S965S 0.37 TCGA-FF-A7CQ-01 4 188924295 188924295 G T ZFP42 Nonsense_Mutation p.E112* 0.07 TCGA-FF-A7CQ-01 4 30724220 30724221 - C PCDH7 Frame_Shift_Ins p.K395Qfs*10 0.21 TCGA-FF-A7CQ-01 4 6325285 6325285 C T PPP2R2C Missense_Mutation p.R363H 0.25 tolerated(0.24) possibly_damaging(0.499) TCGA-FF-A7CQ-01 4 70461965 70461965 G A UGT2A1 Intron 0.27 TCGA-FF-A7CQ-01 4 71522967 71522967 G A IGJ Missense_Mutation p.S77L 0.19 deleterious(0.04) possibly_damaging(0.901) TCGA-FF-A7CQ-01 4 88533881 88533881 A T DSPP Missense_Mutation p.E181D 0.33 probably_damaging(0.941) TCGA-FF-A7CQ-01 5 139818110 139818110 G A ANKHD1 Silent p.L175L 0.17 TCGA-FF-A7CQ-01 5 145979852 145979852 A C PPP2R2B Splice_Site p.X323_splice 0.26 TCGA-FF-A7CQ-01 5 159738952 159738952 C T CCNJL 5'UTR 0.10 TCGA-FF-A7CQ-01 5 160114995 160114995 C T ATP10B Silent p.P29P 0.31 TCGA-FF-A7CQ-01 5 17276574 17276574 C T BASP1 3'UTR 0.27 TCGA-FF-A7CQ-01 5 22143037 22143037 G C CDH12 Intron 0.29 TCGA-FF-A7CQ-01 5 37703146 37703146 G A WDR70 Missense_Mutation p.R458H 0.23 deleterious(0.01) benign(0.081) TCGA-FF-A7CQ-01 5 43291149 43291149 C T HMGCS1 3'UTR 0.24 TCGA-FF-A7CQ-01 6 117708995 117708995 T A ROS1 Silent p.P654P 0.04 TCGA-FF-A7CQ-01 6 123869636 123869636 A G TRDN Silent p.D118D 0.25 TCGA-FF-A7CQ-01 6 137468925 137468926 - T IL22RA2 Frame_Shift_Ins p.N192Kfs*9 0.22 TCGA-FF-A7CQ-01 6 138528237 138528237 C A KIAA1244 Missense_Mutation p.Q66K 0.21 tolerated(0.14) probably_damaging(0.915) TCGA-FF-A7CQ-01 6 1610778 1610778 C T FOXC1 Missense_Mutation p.A33V 0.24 tolerated_low_confidence(0.09) benign(0.259) TCGA-FF-A7CQ-01 6 1610821 1610821 C G FOXC1 Nonsense_Mutation p.Y47* 0.28 TCGA-FF-A7CQ-01 6 26123915 26123915 C T HIST1H2BC Missense_Mutation p.R73H 0.10 tolerated_low_confidence(0.09) benign(0.036) TCGA-FF-A7CQ-01 6 26157108 26157108 G A HIST1H1E Missense_Mutation p.A164T 0.29 tolerated(0.91) unknown(0) TCGA-FF-A7CQ-01 6 27776072 27776072 G A HIST1H2AI Missense_Mutation p.G29S 0.08 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-FF-A7CQ-01 6 31544592 31544592 G C TNF Splice_Site p.X94_splice 0.37 TCGA-FF-A7CQ-01 6 31805113 31805113 G A C6orf48 Missense_Mutation p.R3K 0.27 benign(0.14) TCGA-FF-A7CQ-01 6 35436918 35436918 C T RPL10A Intron 0.27 TCGA-FF-A7CQ-01 6 35610531 35610531 T G FKBP5 Missense_Mutation p.D24A 0.40 deleterious(0.02) possibly_damaging(0.752) TCGA-FF-A7CQ-01 6 37138267 37138267 G A PIM1 5'UTR 0.22 TCGA-FF-A7CQ-01 6 37138392 37138392 C T PIM1 Missense_Mutation p.A14V 0.31 tolerated_low_confidence(0.27) benign(0.086) TCGA-FF-A7CQ-01 6 37138416 37138416 C T PIM1 Missense_Mutation p.A22V 0.16 tolerated(0.58) benign(0.012) TCGA-FF-A7CQ-01 6 37138609 37138609 G A PIM1 Missense_Mutation p.G48D 0.17 deleterious(0.01) probably_damaging(0.972) TCGA-FF-A7CQ-01 6 37138908 37138908 G A PIM1 Missense_Mutation p.G83D 0.24 deleterious(0.02) probably_damaging(0.969) TCGA-FF-A7CQ-01 6 37138919 37138919 C T PIM1 Missense_Mutation p.P87S 0.16 deleterious(0) probably_damaging(0.972) TCGA-FF-A7CQ-01 6 37139042 37139042 G A PIM1 Missense_Mutation p.D128N 0.44 deleterious(0) probably_damaging(0.983) TCGA-FF-A7CQ-01 6 37139046 37139047 - CTTCGA PIM1 In_Frame_Ins p.D131_F132dup 0.12 TCGA-FF-A7CQ-01 6 37139063 37139063 G A PIM1 Missense_Mutation p.E135K 0.18 deleterious(0) probably_damaging(0.952) TCGA-FF-A7CQ-01 6 37139203 37139203 G A PIM1 Silent p.E181E 0.21 TCGA-FF-A7CQ-01 6 37605198 37605198 G A MDGA1 Silent p.S938S 0.44 TCGA-FF-A7CQ-01 6 393206 393206 C G IRF4 Missense_Mutation p.S18R 0.34 deleterious(0) probably_damaging(0.983) TCGA-FF-A7CQ-01 6 393328 393328 A G IRF4 Missense_Mutation p.K59R 0.25 deleterious(0.04) possibly_damaging(0.86) TCGA-FF-A7CQ-01 6 393329 393329 G A IRF4 Silent p.K59K 0.25 TCGA-FF-A7CQ-01 6 393360 393360 C G IRF4 Missense_Mutation p.L70V 0.26 deleterious(0.02) possibly_damaging(0.701) TCGA-FF-A7CQ-01 6 41060751 41060751 A G NFYA Missense_Mutation p.Y272C 0.42 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CQ-01 7 134260279 134260279 A T AKR1B15 Missense_Mutation p.K207N 0.43 deleterious(0) probably_damaging(1) TCGA-FF-A7CQ-01 7 144060445 144060445 A G ARHGEF5 Missense_Mutation p.Q228R 0.18 tolerated(0.22) benign(0.006) TCGA-FF-A7CQ-01 7 148801430 148801430 C T ZNF425 Silent p.S511S 0.36 TCGA-FF-A7CQ-01 7 39991241 39991241 G T CDK13 Missense_Mutation p.S334I 0.07 tolerated(0.27) unknown(0) TCGA-FF-A7CQ-01 7 4153851 4153851 C T SDK1 Silent p.N1256N 0.35 TCGA-FF-A7CQ-01 7 99219100 99219100 G A ZSCAN25 Silent p.G164G 0.36 TCGA-FF-A7CQ-01 8 100887760 100887760 C T VPS13B Missense_Mutation p.P3979S 0.36 tolerated(0.24) possibly_damaging(0.641) TCGA-FF-A7CQ-01 8 122641110 122641110 G A HAS2 Silent p.P157P 0.24 TCGA-FF-A7CQ-01 8 144775926 144775926 C T ZNF707 Silent p.A114A 0.24 TCGA-FF-A7CQ-01 8 56270330 56270330 C T XKR4 Missense_Mutation p.A300V 0.25 deleterious(0.03) benign(0.035) TCGA-FF-A7CQ-01 8 77618914 77618914 G T ZFHX4 Splice_Site p.X864_splice 0.29 TCGA-FF-A7CQ-01 8 88298781 88298781 T A CNBD1 Silent p.L308L 0.27 TCGA-FF-A7CQ-01 9 104125078 104125078 G A BAAT Missense_Mutation p.R297C 0.17 deleterious(0.03) possibly_damaging(0.849) TCGA-FF-A7CQ-01 9 104357008 104357008 C T PPP3R2 Missense_Mutation p.G69S 0.08 deleterious(0.04) benign(0.441) TCGA-FF-A7CQ-01 9 34724155 34724155 C A FAM205A Nonsense_Mutation p.E1028* 0.27 TCGA-FF-A7CQ-01 9 35100654 35100654 C T STOML2 Missense_Mutation p.D292N 0.09 tolerated(0.06) benign(0.445) TCGA-FF-A7CQ-01 9 79875041 79875041 A T VPS13A Silent p.R776R 0.17 TCGA-FF-A7CQ-01 X 114524309 114524309 G A LUZP4 5'Flank 0.50 TCGA-FF-A7CQ-01 X 127186326 127186326 C G ACTRT1 5'UTR 0.52 TCGA-FF-A7CQ-01 X 12994913 12994913 C T TMSB4X Nonsense_Mutation p.Q40* 0.62 TCGA-FF-A7CQ-01 X 142795101 142795101 G A SPANXN2 3'UTR 0.48 TCGA-FF-A7CQ-01 X 37028925 37028925 G A FAM47C Silent p.P814P 0.52 TCGA-FF-A7CR-01 10 115636657 115636657 A C NHLRC2 Silent p.R237R 0.17 TCGA-FF-A7CR-01 10 15256477 15256477 C T FAM171A1 Silent p.A370A 0.23 TCGA-FF-A7CR-01 10 24910129 24910129 G C ARHGAP21 Missense_Mutation p.T232S 0.25 tolerated(0.56) benign(0.037) TCGA-FF-A7CR-01 10 295190 295190 A T ZMYND11 Intron 0.23 TCGA-FF-A7CR-01 10 37419120 37419139 TTAATACTGACAGGCTCTAC - ANKRD30A Splice_Site p.X57_splice 0.09 TCGA-FF-A7CR-01 10 47086871 47086871 T G NPY4R Missense_Mutation p.F30V 0.13 tolerated(0.08) benign(0.043) TCGA-FF-A7CR-01 10 62631996 62631996 T G RHOBTB1 Missense_Mutation p.N623T 0.23 deleterious(0.03) probably_damaging(0.995) TCGA-FF-A7CR-01 10 89623354 89623354 G A PTEN 5'UTR 0.24 TCGA-FF-A7CR-01 11 1017576 1017576 G T MUC6 Missense_Mutation p.T1742K 0.09 unknown(0) TCGA-FF-A7CR-01 11 11373697 11373697 A C CSNK2A3 Missense_Mutation p.F324V 0.26 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 11 121323082 121323082 C A SORL1 Missense_Mutation p.F14L 0.20 tolerated_low_confidence(0.29) benign(0) TCGA-FF-A7CR-01 11 124135191 124135191 G A OR8G5 Missense_Mutation p.G157S 0.22 deleterious(0.01) benign(0) TCGA-FF-A7CR-01 11 124252524 124252524 C A OR8B2 Missense_Mutation p.S239I 0.20 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-FF-A7CR-01 11 128391933 128391933 G C ETS1 Intron 0.19 TCGA-FF-A7CR-01 11 134022670 134022670 T A NCAPD3 3'UTR 0.27 TCGA-FF-A7CR-01 11 33163111 33163111 T C CSTF3 Intron 0.20 TCGA-FF-A7CR-01 11 33374879 33374879 C T HIPK3 Missense_Mutation p.A1138V 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-FF-A7CR-01 11 55579421 55579421 T C OR5L1 Missense_Mutation p.L160S 0.11 deleterious(0.05) benign(0.108) TCGA-FF-A7CR-01 11 55579424 55579424 G C OR5L1 Missense_Mutation p.C161S 0.12 tolerated(0.11) benign(0.163) TCGA-FF-A7CR-01 11 55606497 55606497 A T OR5D16 Missense_Mutation p.E90D 0.22 deleterious(0.04) benign(0.015) TCGA-FF-A7CR-01 11 56128111 56128111 T C OR8J1 Missense_Mutation p.L130P 0.21 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 11 56345100 56345100 G A OR5M10 Missense_Mutation p.A33V 0.27 tolerated(1) benign(0.001) TCGA-FF-A7CR-01 11 57995634 57995634 G T OR10Q1 Silent p.G238G 0.17 TCGA-FF-A7CR-01 11 58978306 58978306 C T MPEG1 Missense_Mutation p.G678D 0.28 tolerated(0.05) benign(0.305) TCGA-FF-A7CR-01 11 58978913 58978913 C G MPEG1 Missense_Mutation p.G476R 0.10 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 11 58979064 58979064 G A MPEG1 Silent p.I425I 0.22 TCGA-FF-A7CR-01 11 62037659 62037659 C T SCGB2A2 5'UTR 0.30 TCGA-FF-A7CR-01 11 64591992 64591992 G A CDC42BPG Missense_Mutation p.R1537W 0.21 deleterious_low_confidence(0) unknown(0) TCGA-FF-A7CR-01 11 67395800 67395800 C T NUDT8 Silent p.S133S 0.24 TCGA-FF-A7CR-01 11 89177362 89177362 A G NOX4 Missense_Mutation p.F130L 0.27 deleterious(0.01) benign(0.038) TCGA-FF-A7CR-01 11 90602325 90602325 C G MIR1261 RNA 0.27 TCGA-FF-A7CR-01 12 113496132 113496132 C T DTX1 Silent p.C45C 0.09 TCGA-FF-A7CR-01 12 113496173 113496173 C T DTX1 Missense_Mutation p.S59F 0.14 deleterious(0) possibly_damaging(0.486) TCGA-FF-A7CR-01 12 114836488 114836488 G A TBX5 Missense_Mutation p.R134C 0.44 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 12 11803087 11803096 GCATTAAGGT CCA ETV6 Splice_Site p.X9_splice 0.19 TCGA-FF-A7CR-01 12 122459950 122459950 C A BCL7A 5'UTR 0.12 TCGA-FF-A7CR-01 12 40953077 40953077 A G MUC19 3'UTR 0.19 TCGA-FF-A7CR-01 12 4383227 4383227 G A CCND2 Silent p.E7E 0.25 TCGA-FF-A7CR-01 12 49435941 49435941 G A KMT2D Nonsense_Mutation p.Q2014* 0.24 TCGA-FF-A7CR-01 12 56712936 56712936 G C PAN2 Silent p.V1104V 0.22 TCGA-FF-A7CR-01 12 57466667 57466667 A C TMEM194A Silent p.L52L 0.21 TCGA-FF-A7CR-01 12 78571048 78571048 G T NAV3 Missense_Mutation p.G1751V 0.39 tolerated(0.09) benign(0.169) TCGA-FF-A7CR-01 12 92537899 92537899 G A BTG1 Missense_Mutation p.T158M 0.12 deleterious(0.03) benign(0.097) TCGA-FF-A7CR-01 12 92537992 92537992 G A BTG1 Missense_Mutation p.A127V 0.20 deleterious(0.01) benign(0.405) TCGA-FF-A7CR-01 13 31480626 31480626 G T MEDAG 5'UTR 0.14 TCGA-FF-A7CR-01 13 45009000 45009000 A C TSC22D1 Missense_Mutation p.L995W 0.29 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 13 47127832 47127832 C T LRCH1 Nonsense_Mutation p.Q101* 0.19 TCGA-FF-A7CR-01 14 103802003 103802003 C T EIF5 5'UTR 0.36 TCGA-FF-A7CR-01 14 106053591 106053591 T C IGHA2 Missense_Mutation p.T236A 0.52 deleterious(0) probably_damaging(0.992) TCGA-FF-A7CR-01 14 106053607 106053607 G C IGHA2 Missense_Mutation p.N230K 0.54 deleterious(0.01) possibly_damaging(0.794) TCGA-FF-A7CR-01 14 106091121 106091121 G T IGHG4 Missense_Mutation p.P226T 0.37 deleterious(0) probably_damaging(0.99) TCGA-FF-A7CR-01 14 106091357 106091357 C T IGHG4 Silent p.T179T 0.34 TCGA-FF-A7CR-01 14 106091363 106091363 G C IGHG4 Missense_Mutation p.N177K 0.29 deleterious(0) probably_damaging(0.987) TCGA-FF-A7CR-01 14 106091383 106091383 G A IGHG4 Missense_Mutation p.P171S 0.31 tolerated(0.07) benign(0.024) TCGA-FF-A7CR-01 14 106109656 106109656 G A IGHG2 Missense_Mutation p.L289F 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-FF-A7CR-01 14 106109669 106109669 G A IGHG2 Silent p.F284F 0.23 TCGA-FF-A7CR-01 14 106109842 106109842 C T IGHG2 Missense_Mutation p.V227M 0.32 deleterious(0.02) possibly_damaging(0.908) TCGA-FF-A7CR-01 14 106109843 106109843 C T IGHG2 Silent p.Q226Q 0.31 TCGA-FF-A7CR-01 14 106110418 106110418 G T IGHG2 Nonsense_Mutation p.C106* 0.29 TCGA-FF-A7CR-01 14 106110882 106110882 G A IGHG2 Silent p.T82T 0.37 TCGA-FF-A7CR-01 14 106110883 106110883 G A IGHG2 Missense_Mutation p.T82I 0.38 tolerated(0.39) benign(0.002) TCGA-FF-A7CR-01 14 106111066 106111066 C G IGHG2 Missense_Mutation p.S21T 0.31 tolerated(0.06) benign(0) TCGA-FF-A7CR-01 14 106173541 106173541 A G IGHA1 Silent p.S342S 0.06 TCGA-FF-A7CR-01 14 106173565 106173565 A G IGHA1 Silent p.G334G 0.10 TCGA-FF-A7CR-01 14 106173566 106173566 C T IGHA1 Missense_Mutation p.G334D 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-FF-A7CR-01 14 106173738 106173738 G A IGHA1 Silent p.L277L 0.11 TCGA-FF-A7CR-01 14 106174346 106174346 G A IGHA1 Missense_Mutation p.T148I 0.26 deleterious(0.04) probably_damaging(0.996) TCGA-FF-A7CR-01 14 106322111 106322111 C T IGHM Silent p.V71V 0.34 TCGA-FF-A7CR-01 14 106322169 106322169 C T IGHM Missense_Mutation p.S52N 0.30 tolerated(0.97) benign(0) TCGA-FF-A7CR-01 14 106363844 106363844 C A IGHD2-15 Translation_Start_Site p.R1? 0.20 unknown(0) TCGA-FF-A7CR-01 14 106367019 106367019 C T IGHD6-13 Translation_Start_Site p.G1? 0.40 unknown(0) TCGA-FF-A7CR-01 14 106725204 106725204 C T IGHV3-23 Silent p.A116A 0.19 TCGA-FF-A7CR-01 14 106725232 106725232 G A IGHV3-23 Missense_Mutation p.A107V 0.21 tolerated_low_confidence(0.19) benign(0.028) TCGA-FF-A7CR-01 14 106725256 106725256 T A IGHV3-23 Missense_Mutation p.Y99F 0.18 deleterious_low_confidence(0.03) benign(0.165) TCGA-FF-A7CR-01 14 106725317 106725338 AGTATGTGCTACCACCACTACC TGTA IGHV3-23 In_Frame_Del p.G72_Y79delinsYN 0.12 TCGA-FF-A7CR-01 14 107169946 107169946 C A IGHV1-69 Silent p.V112V 0.21 TCGA-FF-A7CR-01 14 107169992 107169992 G A IGHV1-69 Missense_Mutation p.T97I 0.20 deleterious(0.03) possibly_damaging(0.455) TCGA-FF-A7CR-01 14 107170057 107170057 A T IGHV1-69 Silent p.G75G 0.25 TCGA-FF-A7CR-01 14 107170127 107170127 G A IGHV1-69 Missense_Mutation p.A52V 0.21 tolerated(0.36) benign(0.005) TCGA-FF-A7CR-01 14 107170215 107170215 G A IGHV1-69 Silent p.L23L 0.19 TCGA-FF-A7CR-01 14 107178842 107178842 G A IGHV2-70 Missense_Mutation p.A112V 0.21 deleterious(0.01) probably_damaging(0.948) TCGA-FF-A7CR-01 14 107178853 107178853 A G IGHV2-70 Silent p.P108P 0.20 TCGA-FF-A7CR-01 14 107178891 107178891 T C IGHV2-70 Missense_Mutation p.K96E 0.23 deleterious(0.01) benign(0.246) TCGA-FF-A7CR-01 14 107178966 107178966 G A IGHV2-70 Missense_Mutation p.L71F 0.23 tolerated(0.69) benign(0.002) TCGA-FF-A7CR-01 14 107179025 107179025 C T IGHV2-70 Missense_Mutation p.S51N 0.25 tolerated(0.16) benign(0.006) TCGA-FF-A7CR-01 14 107179057 107179057 G A IGHV2-70 Silent p.T40T 0.25 TCGA-FF-A7CR-01 14 107179079 107179079 G A IGHV2-70 Missense_Mutation p.P33L 0.24 deleterious(0) possibly_damaging(0.833) TCGA-FF-A7CR-01 14 107179080 107179080 G A IGHV2-70 Missense_Mutation p.P33S 0.25 deleterious(0) possibly_damaging(0.569) TCGA-FF-A7CR-01 14 29261331 29261331 C T C14orf23 Missense_Mutation p.T123I 0.24 tolerated_low_confidence(0.07) possibly_damaging(0.702) TCGA-FF-A7CR-01 14 31626395 31626395 G T HECTD1 Silent p.I579I 0.24 TCGA-FF-A7CR-01 14 77493785 77493785 C T IRF2BPL Silent p.Q117Q 0.14 TCGA-FF-A7CR-01 14 78392248 78392248 C T ADCK1 Nonsense_Mutation p.R384* 0.19 TCGA-FF-A7CR-01 14 89016821 89016821 C T PTPN21 5'UTR 0.13 TCGA-FF-A7CR-01 15 45270701 45270701 G A C15orf43 Missense_Mutation p.D180N 0.22 tolerated(0.19) possibly_damaging(0.858) TCGA-FF-A7CR-01 15 45404810 45404810 C T DUOX2 Silent p.T89T 0.20 TCGA-FF-A7CR-01 15 45427482 45427482 G A DUOX1 Missense_Mutation p.R163Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CR-01 15 59387127 59387127 C T RNF111 3'UTR 0.05 TCGA-FF-A7CR-01 15 59664888 59664888 G C MYO1E 5'UTR 0.25 TCGA-FF-A7CR-01 15 74468257 74468257 A G ISLR Missense_Mutation p.D353G 0.20 tolerated(0.06) benign(0.283) TCGA-FF-A7CR-01 15 81271769 81271769 A C MESDC2 Missense_Mutation p.Y166D 0.35 tolerated(0.13) possibly_damaging(0.791) TCGA-FF-A7CR-01 15 91835705 91835705 C T SV2B Silent p.L659L 0.24 TCGA-FF-A7CR-01 15 92937222 92937222 C T ST8SIA2 5'UTR 0.29 TCGA-FF-A7CR-01 16 18573380 18573380 C T NOMO2 5'UTR 0.22 TCGA-FF-A7CR-01 16 2816224 2816224 C T SRRM2 Missense_Mutation p.R1899W 0.57 unknown(0) TCGA-FF-A7CR-01 16 4910954 4910954 A G UBN1 Missense_Mutation p.S321G 0.53 tolerated(0.16) benign(0.11) TCGA-FF-A7CR-01 16 70926393 70926393 T A HYDIN Silent p.I3096I 0.06 TCGA-FF-A7CR-01 16 71481954 71481954 T C ZNF23 3'UTR 0.27 TCGA-FF-A7CR-01 16 725768 725768 A C RHBDL1 5'Flank 0.17 TCGA-FF-A7CR-01 16 7382975 7382975 C A RBFOX1 5'UTR 0.42 TCGA-FF-A7CR-01 16 7759118 7759118 C T RBFOX1 Silent p.Y373Y 0.49 TCGA-FF-A7CR-01 16 89629371 89629371 G A RPL13 Missense_Mutation p.R186H 0.31 deleterious(0.01) benign(0.007) TCGA-FF-A7CR-01 17 10304053 10304053 G A MYH8 Missense_Mutation p.A1130V 0.12 deleterious(0.01) benign(0.05) TCGA-FF-A7CR-01 17 18907061 18907061 G A FAM83G Silent p.G98G 0.21 TCGA-FF-A7CR-01 17 3571850 3571850 C T TAX1BP3 5'UTR 0.27 TCGA-FF-A7CR-01 17 37934020 37934020 G A IKZF3 Missense_Mutation p.A237V 0.27 tolerated(0.25) benign(0.184) TCGA-FF-A7CR-01 17 5336352 5336352 A C C1QBP Missense_Mutation p.F278V 0.25 deleterious(0) probably_damaging(0.992) TCGA-FF-A7CR-01 17 62006799 62006799 A G CD79B Missense_Mutation p.Y197H 0.46 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 17 7185133 7185133 G A SLC2A4 5'UTR 0.29 TCGA-FF-A7CR-01 17 72233625 72233625 G A TTYH2 Missense_Mutation p.D203N 0.51 tolerated(0.42) benign(0.009) TCGA-FF-A7CR-01 17 74471179 74471179 G A RHBDF2 Missense_Mutation p.T416M 0.10 tolerated(0.13) benign(0.147) TCGA-FF-A7CR-01 17 79478958 79478958 G A ACTG1 Missense_Mutation p.P112S 0.18 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-FF-A7CR-01 17 79478959 79478959 G A ACTG1 Silent p.N111N 0.18 TCGA-FF-A7CR-01 18 29052745 29052745 A G DSG3 Missense_Mutation p.S699G 0.21 tolerated(0.08) benign(0.156) TCGA-FF-A7CR-01 18 60986248 60986248 C T BCL2 5'UTR 0.20 TCGA-FF-A7CR-01 18 63529970 63529970 C A CDH7 Missense_Mutation p.P561T 0.18 deleterious(0) probably_damaging(0.997) TCGA-FF-A7CR-01 18 70417760 70417760 A G NETO1 Missense_Mutation p.S360P 0.05 deleterious(0) probably_damaging(0.996) TCGA-FF-A7CR-01 18 70534628 70534628 C T NETO1 5'UTR 0.23 TCGA-FF-A7CR-01 19 1108312 1108312 G A SBNO2 Silent p.G1336G 0.18 TCGA-FF-A7CR-01 19 11446354 11446354 C T RAB3D Missense_Mutation p.A112T 0.21 deleterious(0.04) possibly_damaging(0.69) TCGA-FF-A7CR-01 19 11508197 11508197 G A RGL3 Missense_Mutation p.A614V 0.35 tolerated(0.45) unknown(0) TCGA-FF-A7CR-01 19 12980018 12980018 A T MAST1 Missense_Mutation p.Q971L 0.24 deleterious(0.01) possibly_damaging(0.619) TCGA-FF-A7CR-01 19 22157027 22157027 G T ZNF208 Missense_Mutation p.A270E 0.05 deleterious(0.02) benign(0.023) TCGA-FF-A7CR-01 19 22272457 22272457 C G ZNF257 3'UTR 0.33 TCGA-FF-A7CR-01 19 22574125 22574125 C T ZNF98 3'UTR 0.18 TCGA-FF-A7CR-01 19 37853921 37853921 A T HKR1 Silent p.S408S 0.31 TCGA-FF-A7CR-01 19 43519399 43519399 T G PSG11 Missense_Mutation p.K278T 0.18 tolerated(0.42) probably_damaging(0.948) TCGA-FF-A7CR-01 19 50379921 50379921 C A AKT1S1 5'UTR 0.40 TCGA-FF-A7CR-01 19 52222861 52222861 G A HAS1 Silent p.T100T 0.39 TCGA-FF-A7CR-01 19 7584128 7584128 A T CTD-2207O23.12 Missense_Mutation p.K33I 0.23 unknown(0) TCGA-FF-A7CR-01 1 110561015 110561015 C T AHCYL1 Missense_Mutation p.R382W 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-FF-A7CR-01 1 11253778 11253778 G A ANGPTL7 Missense_Mutation p.E207K 0.14 deleterious(0.03) benign(0.021) TCGA-FF-A7CR-01 1 12908189 12908189 G A HNRNPCL1 5'UTR 0.06 TCGA-FF-A7CR-01 1 149857575 149857575 T C HIST2H2BE 3'UTR 0.27 TCGA-FF-A7CR-01 1 149858804 149858804 C G HIST2H2AC Missense_Mutation p.L94V 0.26 deleterious_low_confidence(0) possibly_damaging(0.475) TCGA-FF-A7CR-01 1 152187485 152187485 C T HRNR Missense_Mutation p.R2207H 0.06 unknown(0) TCGA-FF-A7CR-01 1 160390849 160390849 C T VANGL2 Silent p.S315S 0.24 TCGA-FF-A7CR-01 1 16054583 16054583 C T PLEKHM2 Silent p.N590N 0.20 TCGA-FF-A7CR-01 1 169075973 169075973 C A ATP1B1 5'UTR 0.28 TCGA-FF-A7CR-01 1 181689418 181689418 C T CACNA1E Missense_Mutation p.L610F 0.14 deleterious(0) possibly_damaging(0.849) TCGA-FF-A7CR-01 1 19494536 19494536 G A UBR4 Missense_Mutation p.T1295I 0.24 benign(0.007) TCGA-FF-A7CR-01 1 196977984 196977984 C T CFHR5 3'UTR 0.37 TCGA-FF-A7CR-01 1 203274867 203274867 G C BTG2 Missense_Mutation p.A45P 0.17 tolerated(0.13) possibly_damaging(0.602) TCGA-FF-A7CR-01 1 203274878 203274878 T C BTG2 Splice_Site p.X48_splice 0.18 TCGA-FF-A7CR-01 1 203276287 203276287 C G BTG2 Silent p.R66R 0.20 TCGA-FF-A7CR-01 1 206858801 206858801 G A MAPKAPK2 Missense_Mutation p.G76D 0.23 deleterious(0) probably_damaging(0.998) TCGA-FF-A7CR-01 1 21415645 21415645 C A EIF4G3 5'UTR 0.21 TCGA-FF-A7CR-01 1 222885628 222885628 C T AIDA Missense_Mutation p.R11H 0.22 tolerated(0.1) benign(0) TCGA-FF-A7CR-01 1 223567173 223567173 C T C1orf65 Missense_Mutation p.P119L 0.21 tolerated(0.4) benign(0.002) TCGA-FF-A7CR-01 1 231093993 231093993 T C TTC13 Missense_Mutation p.N140S 0.17 deleterious(0.04) benign(0.265) TCGA-FF-A7CR-01 1 240072488 240072488 C A CHRM3 Silent p.V579V 0.24 TCGA-FF-A7CR-01 1 24483696 24483696 G A IFNLR1 Missense_Mutation p.A496V 0.05 tolerated(0.06) benign(0.124) TCGA-FF-A7CR-01 1 24996752 24996752 A T SRRM1 Silent p.P782P 0.28 TCGA-FF-A7CR-01 1 49208438 49208438 C T BEND5 Missense_Mutation p.A251T 0.07 tolerated(0.52) benign(0.003) TCGA-FF-A7CR-01 1 51121170 51121170 T A FAF1 Missense_Mutation p.I230F 0.25 deleterious(0) probably_damaging(0.959) TCGA-FF-A7CR-01 1 54640266 54640266 C T CYB5RL 3'UTR 0.25 TCGA-FF-A7CR-01 1 60331577 60331577 A G HOOK1 Missense_Mutation p.Q593R 0.18 tolerated(1) benign(0.002) TCGA-FF-A7CR-01 1 63282305 63282305 G A ATG4C Missense_Mutation p.G74R 0.23 deleterious(0.04) possibly_damaging(0.452) TCGA-FF-A7CR-01 1 72400774 72400774 G T NEGR1 Missense_Mutation p.L133I 0.19 tolerated(0.06) possibly_damaging(0.863) TCGA-FF-A7CR-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.14 TCGA-FF-A7CR-01 1 99470000 99470000 G A LPPR5 Silent p.P76P 0.27 TCGA-FF-A7CR-01 20 17240884 17240884 G T PCSK2 Splice_Site p.X60_splice 0.19 TCGA-FF-A7CR-01 20 44180635 44180635 A T WFDC8 Intron 0.25 TCGA-FF-A7CR-01 20 470463 470463 C - CSNK2A1 Frame_Shift_Del p.K229Rfs*15 0.19 TCGA-FF-A7CR-01 20 55967801 55967801 A C RBM38 Missense_Mutation p.Y110S 0.28 tolerated(0.36) probably_damaging(0.973) TCGA-FF-A7CR-01 20 58569512 58569512 C T CDH26 Missense_Mutation p.A545V 0.18 tolerated(1) benign(0.024) TCGA-FF-A7CR-01 20 62576008 62576008 C T UCKL1 Missense_Mutation p.R245H 0.30 deleterious(0) probably_damaging(0.992) TCGA-FF-A7CR-01 21 39775625 39775625 G A ERG Missense_Mutation p.T139M 0.27 tolerated(0.2) benign(0.023) TCGA-FF-A7CR-01 21 44513242 44513242 C T U2AF1 Silent p.S231S 0.15 TCGA-FF-A7CR-01 22 23213973 23213973 A T IGLV4-3 Missense_Mutation p.S44C 0.18 deleterious(0) probably_damaging(0.991) TCGA-FF-A7CR-01 22 23213981 23213981 G C IGLV4-3 Missense_Mutation p.E46D 0.20 tolerated(0.55) probably_damaging(0.996) TCGA-FF-A7CR-01 22 23222956 23222956 T A IGLV3-1 Missense_Mutation p.F7I 0.28 deleterious(0.02) benign(0.009) TCGA-FF-A7CR-01 22 23223442 23223442 A G IGLV3-1 Missense_Mutation p.K71R 0.17 tolerated(0.23) benign(0.007) TCGA-FF-A7CR-01 22 23230106 23230106 G C IGLL5 5'UTR 0.16 TCGA-FF-A7CR-01 22 23230310 23230310 T A IGLL5 Missense_Mutation p.L26Q 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FF-A7CR-01 22 23230311 23230311 G A IGLL5 Silent p.L26L 0.18 TCGA-FF-A7CR-01 22 23230315 23230315 C G IGLL5 Missense_Mutation p.L28V 0.17 tolerated_low_confidence(0.06) benign(0.033) TCGA-FF-A7CR-01 22 23230348 23230348 C T IGLL5 Silent p.L39L 0.15 TCGA-FF-A7CR-01 22 23230419 23230419 C T IGLL5 Silent p.S62S 0.29 TCGA-FF-A7CR-01 22 23230439 23230439 G A IGLL5 Missense_Mutation p.R69K 0.22 deleterious_low_confidence(0.05) benign(0.131) TCGA-FF-A7CR-01 22 23230440 23230440 G A IGLL5 Splice_Site p.X69_splice 0.24 TCGA-FF-A7CR-01 22 23235998 23235998 G A IGLL5 Missense_Mutation p.G109S 0.26 tolerated_low_confidence(0.09) benign(0.22) TCGA-FF-A7CR-01 22 23235999 23235999 G C IGLL5 Splice_Site p.X109_splice 0.25 TCGA-FF-A7CR-01 22 36003316 36003316 G T MB 3'UTR 0.25 TCGA-FF-A7CR-01 22 41076964 41076964 C T MCHR1 Missense_Mutation p.R101C 0.25 deleterious(0.05) benign(0.432) TCGA-FF-A7CR-01 22 42977956 42977956 G A POLDIP3 3'Flank 0.25 TCGA-FF-A7CR-01 22 42977957 42977957 G A POLDIP3 3'Flank 0.16 TCGA-FF-A7CR-01 2 103353302 103353302 A C MFSD9 5'UTR 0.28 TCGA-FF-A7CR-01 2 108917339 108917339 C G SULT1C2 Intron 0.30 TCGA-FF-A7CR-01 2 109276086 109276086 G A LIMS1 Missense_Mutation p.A70T 0.10 tolerated(0.13) possibly_damaging(0.856) TCGA-FF-A7CR-01 2 112779062 112779062 C T MERTK Silent p.G751G 0.23 TCGA-FF-A7CR-01 2 136873448 136873448 C T CXCR4 Missense_Mutation p.G21D 0.30 tolerated(0.31) possibly_damaging(0.79) TCGA-FF-A7CR-01 2 157407178 157407178 G T GPD2 Silent p.V297V 0.19 TCGA-FF-A7CR-01 2 167313511 167313511 T C SCN7A Missense_Mutation p.S387G 0.23 deleterious(0.01) probably_damaging(0.978) TCGA-FF-A7CR-01 2 187521026 187521026 A C ITGAV Silent p.R539R 0.19 TCGA-FF-A7CR-01 2 189866175 189866175 A C COL3A1 Missense_Mutation p.K779T 0.21 unknown(0) TCGA-FF-A7CR-01 2 226447340 226447340 C G NYAP2 Missense_Mutation p.P403A 0.24 tolerated(0.2) benign(0.007) TCGA-FF-A7CR-01 2 40655834 40655834 T C SLC8A1 Silent p.V529V 0.24 TCGA-FF-A7CR-01 2 60689133 60689133 G A BCL11A Missense_Mutation p.P305L 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-FF-A7CR-01 2 67630426 67630426 G A ETAA1 Silent p.E204E 0.22 TCGA-FF-A7CR-01 2 77745353 77745353 T C LRRTM4 Intron 0.26 TCGA-FF-A7CR-01 2 89065664 89065664 T G AC096579.1 5'Flank 0.10 TCGA-FF-A7CR-01 2 89065678 89065678 G A AC096579.1 5'Flank 0.29 TCGA-FF-A7CR-01 2 89065683 89065683 A G AC096579.1 5'Flank 0.23 TCGA-FF-A7CR-01 2 89065704 89065704 A G AC096579.1 5'Flank 0.14 TCGA-FF-A7CR-01 2 89065714 89065714 G A AC096579.1 5'Flank 0.21 TCGA-FF-A7CR-01 2 89161493 89161493 C T IGKC 5'Flank 0.29 TCGA-FF-A7CR-01 2 89185659 89185659 A T IGKV4-1 Missense_Mutation p.Y118F 0.32 tolerated(0.46) possibly_damaging(0.453) TCGA-FF-A7CR-01 3 122003487 122003487 C T CASR Missense_Mutation p.R906C 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-FF-A7CR-01 3 124237312 124237312 C T KALRN 3'UTR 0.23 TCGA-FF-A7CR-01 3 126747903 126747903 C T PLXNA1 Silent p.N1579N 0.29 TCGA-FF-A7CR-01 3 134089710 134089710 C T AMOTL2 Missense_Mutation p.R189H 0.20 tolerated(0.11) probably_damaging(0.998) TCGA-FF-A7CR-01 3 154139229 154139229 C T GPR149 Missense_Mutation p.G408R 0.18 deleterious(0) probably_damaging(0.932) TCGA-FF-A7CR-01 3 156272914 156272914 C A SSR3 5'UTR 0.25 TCGA-FF-A7CR-01 3 183273174 183273174 G A KLHL6 Missense_Mutation p.L90F 0.29 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 3 185337267 185337267 C T SENP2 Missense_Mutation p.R475W 0.26 deleterious(0.02) probably_damaging(0.977) TCGA-FF-A7CR-01 3 32022480 32022480 G C OSBPL10 Missense_Mutation p.S64R 0.18 deleterious_low_confidence(0.01) benign(0.184) TCGA-FF-A7CR-01 3 32022513 32022513 T C OSBPL10 Silent p.G53G 0.22 TCGA-FF-A7CR-01 3 32022601 32022601 G A OSBPL10 Missense_Mutation p.A24V 0.29 tolerated_low_confidence(0.12) unknown(0) TCGA-FF-A7CR-01 3 32022625 32022625 C G OSBPL10 Missense_Mutation p.S16T 0.22 deleterious_low_confidence(0) unknown(0) TCGA-FF-A7CR-01 3 32022747 32022747 C T OSBPL10 5'UTR 0.24 TCGA-FF-A7CR-01 3 37458937 37458937 C T C3orf35 Silent p.G60G 0.20 TCGA-FF-A7CR-01 3 38182337 38182337 C T MYD88 Missense_Mutation p.P266L 0.46 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 3 4722294 4722294 C T ITPR1 Nonsense_Mutation p.R994* 0.25 TCGA-FF-A7CR-01 3 47385186 47385186 G A KLHL18 Missense_Mutation p.A494T 0.21 deleterious(0.05) possibly_damaging(0.527) TCGA-FF-A7CR-01 3 51749480 51749480 G T GRM2 Missense_Mutation p.G564V 0.23 tolerated(0.21) benign(0.01) TCGA-FF-A7CR-01 3 89499497 89499497 G T EPHA3 Missense_Mutation p.K889N 0.25 deleterious(0.02) probably_damaging(0.989) TCGA-FF-A7CR-01 3 93768309 93768309 C G ARL13B Missense_Mutation p.L362V 0.22 tolerated(1) benign(0.003) TCGA-FF-A7CR-01 3 93768365 93768365 T A ARL13B Silent p.P380P 0.20 TCGA-FF-A7CR-01 4 103966055 103966055 G A SLC9B2 Missense_Mutation p.R330C 0.20 deleterious(0.04) benign(0.002) TCGA-FF-A7CR-01 4 143044563 143044563 A C INPP4B Silent p.A633A 0.27 TCGA-FF-A7CR-01 4 145658962 145658962 G A HHIP Silent p.P652P 0.26 TCGA-FF-A7CR-01 4 187005019 187005019 G T TLR3 Missense_Mutation p.G727C 0.21 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 4 367062 367062 G A ZNF141 Missense_Mutation p.G279E 0.21 deleterious(0.04) benign(0.044) TCGA-FF-A7CR-01 4 435533 435533 A G ZNF721 Missense_Mutation p.L908P 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FF-A7CR-01 4 69433904 69433904 C T UGT2B17 Missense_Mutation p.S100N 0.24 tolerated(0.36) benign(0) TCGA-FF-A7CR-01 4 7056150 7056150 G A TADA2B Missense_Mutation p.R211Q 0.27 tolerated(0.08) benign(0.004) TCGA-FF-A7CR-01 4 74963295 74963296 - AAAC CXCL2 3'UTR 0.29 TCGA-FF-A7CR-01 4 80246356 80246356 C T NAA11 Missense_Mutation p.D226N 0.22 tolerated_low_confidence(0.23) benign(0) TCGA-FF-A7CR-01 4 94376873 94376873 T G GRID2 Missense_Mutation p.F536V 0.25 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 5 102442522 102442522 G A GIN1 Silent p.C77C 0.06 TCGA-FF-A7CR-01 5 102613582 102613582 T C C5orf30 3'UTR 0.22 TCGA-FF-A7CR-01 5 108672887 108672887 T C PJA2 3'UTR 0.25 TCGA-FF-A7CR-01 5 13845064 13845064 A G DNAH5 Missense_Mutation p.F1718S 0.32 benign(0.014) TCGA-FF-A7CR-01 5 149901306 149901306 G A NDST1 Missense_Mutation p.V164M 0.28 deleterious(0) possibly_damaging(0.893) TCGA-FF-A7CR-01 5 33964023 33964023 A C SLC45A2 Missense_Mutation p.F221V 0.17 deleterious(0) possibly_damaging(0.457) TCGA-FF-A7CR-01 5 57755718 57755718 G A PLK2 Silent p.G23G 0.20 TCGA-FF-A7CR-01 5 66462402 66462402 C T MAST4 Silent p.F2465F 0.27 TCGA-FF-A7CR-01 6 117632264 117632264 A C ROS1 Missense_Mutation p.L2051R 0.35 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CR-01 6 138200459 138200460 TG - TNFAIP3 Frame_Shift_Del p.C627Ffs*44 0.15 TCGA-FF-A7CR-01 6 1610903 1610903 G A FOXC1 Missense_Mutation p.D75N 0.26 deleterious(0) probably_damaging(0.992) TCGA-FF-A7CR-01 6 162206824 162206824 C G PARK2 Missense_Mutation p.G284A 0.14 deleterious(0) possibly_damaging(0.61) TCGA-FF-A7CR-01 6 26056463 26056463 G A HIST1H1C Missense_Mutation p.A65V 0.41 tolerated(0.09) benign(0.364) TCGA-FF-A7CR-01 6 27799065 27799065 T C HIST1H4K Missense_Mutation p.T81A 0.41 deleterious(0.01) benign(0.172) TCGA-FF-A7CR-01 6 30539197 30539197 G C ABCF1 5'UTR 0.49 TCGA-FF-A7CR-01 6 37138332 37138332 C G PIM1 5'UTR 0.34 TCGA-FF-A7CR-01 6 37138355 37138355 C T PIM1 Missense_Mutation p.L2F 0.26 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-FF-A7CR-01 6 37138420 37138420 C T PIM1 Silent p.T23T 0.36 TCGA-FF-A7CR-01 6 37138625 37138625 C G PIM1 Nonsense_Mutation p.Y53* 0.49 TCGA-FF-A7CR-01 6 37138901 37138901 C A PIM1 Missense_Mutation p.P81T 0.54 deleterious(0.04) possibly_damaging(0.581) TCGA-FF-A7CR-01 6 37138946 37138946 G A PIM1 Missense_Mutation p.V96M 0.32 deleterious(0) probably_damaging(0.994) TCGA-FF-A7CR-01 6 37139038 37139038 G T PIM1 Silent p.V126V 0.14 TCGA-FF-A7CR-01 6 37139191 37139191 C T PIM1 Silent p.L177L 0.32 TCGA-FF-A7CR-01 6 37140784 37140784 A T PIM1 Missense_Mutation p.Y207F 0.50 deleterious(0.01) probably_damaging(0.939) TCGA-FF-A7CR-01 6 37140786 37140786 A G PIM1 Missense_Mutation p.S208G 0.50 deleterious(0) probably_damaging(0.983) TCGA-FF-A7CR-01 6 37140867 37140867 A T PIM1 Missense_Mutation p.M235L 0.51 tolerated(0.09) benign(0.135) TCGA-FF-A7CR-01 6 393318 393318 C T IRF4 Missense_Mutation p.H56Y 0.18 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 7 110764029 110764029 G A LRRN3 Missense_Mutation p.E401K 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-FF-A7CR-01 7 129330335 129330335 G T NRF1 Silent p.L185L 0.28 TCGA-FF-A7CR-01 7 149480709 149480709 G A SSPO RNA 0.16 TCGA-FF-A7CR-01 7 44621815 44621819 GCCCC - TMED4 5'UTR 0.30 TCGA-FF-A7CR-01 7 53104001 53104001 C T POM121L12 Missense_Mutation p.R213W 0.29 tolerated(0.06) probably_damaging(0.942) TCGA-FF-A7CR-01 7 76143285 76143285 A G UPK3B Silent p.R216R 0.27 TCGA-FF-A7CR-01 7 92760372 92760372 A G SAMD9L 3'UTR 0.36 TCGA-FF-A7CR-01 7 99453289 99453290 - A CYP3A43 Frame_Shift_Ins p.N251Kfs*4 0.17 TCGA-FF-A7CR-01 7 99507230 99507230 C T TRIM4 Missense_Mutation p.M175I 0.17 tolerated(0.25) benign(0.001) TCGA-FF-A7CR-01 7 99726095 99726096 - A MBLAC1 3'UTR 0.12 TCGA-FF-A7CR-01 8 125565316 125565318 CTC - MTSS1 In_Frame_Del p.G728del 0.27 TCGA-FF-A7CR-01 8 12957770 12957770 C T DLC1 Silent p.L692L 0.20 TCGA-FF-A7CR-01 8 133045291 133045291 T C OC90 Missense_Mutation p.E285G 0.12 tolerated(1) benign(0) TCGA-FF-A7CR-01 8 13356598 13356598 T C DLC1 Missense_Mutation p.Q328R 0.18 deleterious_low_confidence(0.03) benign(0.11) TCGA-FF-A7CR-01 8 134057342 134057342 A G SLA Missense_Mutation p.V164A 0.30 deleterious(0) probably_damaging(1) TCGA-FF-A7CR-01 8 142178188 142178188 C T DENND3 Silent p.Y533Y 0.07 TCGA-FF-A7CR-01 8 143695199 143695199 C T ARC Missense_Mutation p.R145H 0.27 deleterious_low_confidence(0.04) benign(0.003) TCGA-FF-A7CR-01 8 144790043 144790043 G A CCDC166 Silent p.Y79Y 0.35 TCGA-FF-A7CR-01 8 17406346 17406346 G C SLC7A2 Missense_Mutation p.S271T 0.23 tolerated(0.55) benign(0.003) TCGA-FF-A7CR-01 8 2057240 2057240 G T MYOM2 Missense_Mutation p.R1033L 0.20 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CR-01 8 21977679 21977679 T C HR Silent p.P928P 0.29 TCGA-FF-A7CR-01 8 25181469 25181469 T C DOCK5 Splice_Site p.X573_splice 0.18 TCGA-FF-A7CR-01 8 59750643 59750643 T - TOX Frame_Shift_Del p.K307Nfs*16 0.20 TCGA-FF-A7CR-01 8 77765620 77765620 A G ZFHX4 Missense_Mutation p.S2155G 0.18 benign(0.211) TCGA-FF-A7CR-01 8 9760978 9760978 G A LINC00599 5'Flank 0.15 TCGA-FF-A7CR-01 9 103204249 103204249 C T MSANTD3 Missense_Mutation p.A10V 0.26 deleterious_low_confidence(0.01) probably_damaging(0.974) TCGA-FF-A7CR-01 9 1056631 1056631 C A DMRT2 Silent p.G348G 0.20 TCGA-FF-A7CR-01 9 110250112 110250112 G A KLF4 Missense_Mutation p.A188V 0.30 deleterious(0.04) probably_damaging(0.957) TCGA-FF-A7CR-01 9 123922502 123922502 A G CNTRL Missense_Mutation p.T1671A 0.23 benign(0.001) TCGA-FF-A7CR-01 9 133729485 133729485 G A ABL1 Silent p.E57E 0.18 TCGA-FF-A7CR-01 9 139973009 139973009 C T UAP1L1 Missense_Mutation p.H184Y 0.21 deleterious(0) possibly_damaging(0.715) TCGA-FF-A7CR-01 9 15745534 15745534 G A CCDC171 Missense_Mutation p.R859H 0.20 tolerated(0.41) benign(0.009) TCGA-FF-A7CR-01 9 37424860 37424860 G T GRHPR Missense_Mutation p.W34C 0.37 deleterious(0) possibly_damaging(0.869) TCGA-FF-A7CR-01 9 37424900 37424900 G C GRHPR Missense_Mutation p.G48R 0.42 tolerated(0.66) benign(0.093) TCGA-FF-A7CR-01 9 86917281 86917281 C T SLC28A3 Missense_Mutation p.A120T 0.26 deleterious(0.01) possibly_damaging(0.725) TCGA-FF-A7CR-01 9 96938248 96938248 G A MIRLET7A1 RNA 0.21 TCGA-FF-A7CR-01 X 114426552 114426552 G A RBMXL3 Missense_Mutation p.D850N 0.45 tolerated_low_confidence(0.17) possibly_damaging(0.555) TCGA-FF-A7CR-01 X 155004783 155004783 T C SPRY3 3'UTR 0.19 TCGA-FF-A7CR-01 X 155009437 155009437 G T SPRY3 3'UTR 0.17 TCGA-FF-A7CR-01 X 2408513 2408513 G A ZBED1 Missense_Mutation p.T83M 0.10 deleterious(0) probably_damaging(0.97) TCGA-FF-A7CR-01 X 26212458 26212458 A T MAGEB6 Missense_Mutation p.K165N 0.44 tolerated(0.2) probably_damaging(0.981) TCGA-FF-A7CR-01 X 41056722 41056722 T A USP9X Missense_Mutation p.F1447I 0.45 tolerated(0.19) benign(0.01) TCGA-FF-A7CR-01 X 48547156 48547156 T C WAS Silent p.L347L 0.52 TCGA-FF-A7CR-01 X 49083586 49083586 C T CACNA1F Silent p.E374E 0.40 TCGA-FF-A7CR-01 X 52825492 52825492 G A SPANXN5 3'UTR 0.48 TCGA-FF-A7CR-01 X 65480101 65480101 A G HEPH Missense_Mutation p.T1120A 0.55 tolerated(0.75) benign(0.007) TCGA-FF-A7CR-01 X 69424319 69424319 G A DGAT2L6 Missense_Mutation p.R271H 0.41 deleterious(0.02) benign(0.015) TCGA-FF-A7CW-01 10 27703150 27703150 C T PTCHD3 Silent p.P10P 0.32 TCGA-FF-A7CW-01 10 28420542 28420542 C T MPP7 Missense_Mutation p.D132N 0.24 deleterious(0.04) possibly_damaging(0.517) TCGA-FF-A7CW-01 10 54048530 54048530 T C PRKG1 Missense_Mutation p.I585T 0.23 deleterious(0) possibly_damaging(0.779) TCGA-FF-A7CW-01 10 98157024 98157024 C T TLL2 Missense_Mutation p.V435I 0.32 tolerated(1) benign(0.005) TCGA-FF-A7CW-01 11 27523039 27523039 T G LIN7C Intron 0.17 TCGA-FF-A7CW-01 11 63585573 63585573 G A C11orf84 Missense_Mutation p.V142M 0.26 deleterious(0.02) benign(0.407) TCGA-FF-A7CW-01 11 68773352 68773352 G A MRGPRF Silent p.C142C 0.22 TCGA-FF-A7CW-01 12 112103531 112103531 G A BRAP Missense_Mutation p.R270C 0.21 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CW-01 12 122612486 122612486 G T MLXIP Missense_Mutation p.V193L 0.29 deleterious(0.01) benign(0.072) TCGA-FF-A7CW-01 12 1943813 1943813 A - LRTM2 Frame_Shift_Del p.K348Sfs*5 0.20 TCGA-FF-A7CW-01 12 49435033 49435033 G A KMT2D Nonsense_Mutation p.Q2174* 0.36 TCGA-FF-A7CW-01 14 106330055 106330055 C A IGHJ5 Missense_Mutation p.W6C 0.20 probably_damaging(1) TCGA-FF-A7CW-01 14 106330067 106330067 C G IGHJ5 Missense_Mutation p.W2C 0.22 benign(0.248) TCGA-FF-A7CW-01 14 106691919 106691919 C G IGHV3-21 Silent p.G35G 0.24 TCGA-FF-A7CW-01 14 91951974 91951974 A T SMEK1 Splice_Site p.X99_splice 0.11 TCGA-FF-A7CW-01 15 75093927 75093927 A G CSK Missense_Mutation p.K293R 0.11 tolerated(0.52) benign(0.114) TCGA-FF-A7CW-01 16 11855353 11855353 C T ZC3H7A Missense_Mutation p.R743Q 0.38 tolerated(0.05) possibly_damaging(0.86) TCGA-FF-A7CW-01 16 67063678 67063678 C T CBFB Missense_Mutation p.R43C 0.26 deleterious(0.04) benign(0.241) TCGA-FF-A7CW-01 17 26925581 26925581 T C SPAG5 Missense_Mutation p.R42G 0.08 tolerated_low_confidence(0.77) benign(0) TCGA-FF-A7CW-01 17 5417900 5417900 C T NLRP1 3'Flank 0.29 TCGA-FF-A7CW-01 17 56408600 56408600 C T BZRAP1 5'Flank 0.45 TCGA-FF-A7CW-01 17 79977224 79977224 G A STRA13 Missense_Mutation p.A59V 0.09 tolerated(0.08) possibly_damaging(0.657) TCGA-FF-A7CW-01 17 9745901 9745901 G A GLP2R Missense_Mutation p.E158K 0.23 deleterious(0) probably_damaging(0.966) TCGA-FF-A7CW-01 18 15316702 15316702 C T RNU6-721P 3'Flank 0.17 TCGA-FF-A7CW-01 18 21508671 21508671 C T LAMA3 Missense_Mutation p.A2793V 0.12 benign(0.002) TCGA-FF-A7CW-01 18 31324277 31324277 G A ASXL3 Missense_Mutation p.V1489I 0.40 possibly_damaging(0.452) TCGA-FF-A7CW-01 18 333015 333015 C T COLEC12 Missense_Mutation p.E649K 0.11 deleterious(0.01) unknown(0) TCGA-FF-A7CW-01 18 43514836 43514836 G A EPG5 Silent p.S732S 0.17 TCGA-FF-A7CW-01 18 6978310 6978310 C T LAMA1 Silent p.T2025T 0.20 TCGA-FF-A7CW-01 19 40711082 40711082 G A MAP3K10 Missense_Mutation p.R356Q 0.34 tolerated(1) benign(0.004) TCGA-FF-A7CW-01 1 173951933 173951933 A T RC3H1 Missense_Mutation p.F234I 0.46 deleterious(0) probably_damaging(0.997) TCGA-FF-A7CW-01 1 200818866 200818866 G A CAMSAP2 Missense_Mutation p.R990Q 0.52 deleterious(0) probably_damaging(1) TCGA-FF-A7CW-01 1 22182158 22182158 G A HSPG2 Silent p.G1904G 0.19 TCGA-FF-A7CW-01 22 23063437 23063437 C T IGLV3-19 Silent p.S48S 0.36 TCGA-FF-A7CW-01 22 23063480 23063480 G A IGLV3-19 Missense_Mutation p.V63I 0.37 deleterious(0.04) benign(0.028) TCGA-FF-A7CW-01 22 23063543 23063543 A G IGLV3-19 Missense_Mutation p.S84G 0.24 tolerated(0.09) benign(0.057) TCGA-FF-A7CW-01 22 24167589 24167589 A C SMARCB1 Missense_Mutation p.T325P 0.17 deleterious(0) possibly_damaging(0.812) TCGA-FF-A7CW-01 2 1491693 1491693 G A TPO Silent p.V566V 0.34 TCGA-FF-A7CW-01 2 160285738 160285738 C T BAZ2B Missense_Mutation p.R743H 0.22 benign(0.087) TCGA-FF-A7CW-01 2 80801387 80801387 G A CTNNA2 Missense_Mutation p.R614H 0.26 deleterious(0.01) possibly_damaging(0.89) TCGA-FF-A7CW-01 3 140275464 140275464 C T CLSTN2 Missense_Mutation p.T595M 0.15 deleterious(0) probably_damaging(0.998) TCGA-FF-A7CW-01 3 150916504 150916504 T C GPR171 Missense_Mutation p.N224D 0.17 deleterious(0.02) benign(0.111) TCGA-FF-A7CW-01 3 170136742 170136742 C T CLDN11 5'UTR 0.08 TCGA-FF-A7CW-01 3 183273174 183273174 G A KLHL6 Missense_Mutation p.L90F 0.43 deleterious(0) probably_damaging(1) TCGA-FF-A7CW-01 3 50327160 50327160 C G IFRD2 Missense_Mutation p.A258P 0.27 deleterious(0) probably_damaging(0.995) TCGA-FF-A7CW-01 4 113569352 113569352 A G LARP7 Intron 0.24 TCGA-FF-A7CW-01 4 123844307 123844309 AAG - SPATA5 In_Frame_Del p.K5del 0.16 TCGA-FF-A7CW-01 4 22446632 22446632 G T GPR125 Missense_Mutation p.P224T 0.20 tolerated(0.37) benign(0.004) TCGA-FF-A7CW-01 4 69978319 69978319 G A UGT2B7 Nonsense_Mutation p.W485* 0.32 TCGA-FF-A7CW-01 4 79176419 79176419 G - FRAS1 Frame_Shift_Del p.V165Cfs*10 0.16 TCGA-FF-A7CW-01 5 41054902 41054902 T G MROH2B Silent p.T358T 0.27 TCGA-FF-A7CW-01 5 480029 480029 C T SLC9A3 Silent p.S523S 0.19 TCGA-FF-A7CW-01 5 71528350 71528350 C T MRPS27 Missense_Mutation p.E171K 0.20 deleterious(0) probably_damaging(1) TCGA-FF-A7CW-01 6 26157030 26157030 C T HIST1H1E Missense_Mutation p.P138S 0.20 tolerated(0.43) unknown(0) TCGA-FF-A7CW-01 6 27792256 27792256 C T HIST1H4J 3'UTR 0.23 TCGA-FF-A7CW-01 7 143049009 143049009 C T CLCN1 Missense_Mutation p.P973L 0.16 tolerated_low_confidence(1) probably_damaging(0.999) TCGA-FF-A7CW-01 7 2977662 2977662 A T CARD11 Missense_Mutation p.L341Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-FF-A7CW-01 7 57187776 57187776 G T ZNF479 Missense_Mutation p.S449Y 0.37 tolerated(0.43) benign(0.002) TCGA-FF-A7CW-01 7 79082348 79082348 A T MAGI2 Missense_Mutation p.C97S 0.42 tolerated(0.34) possibly_damaging(0.596) TCGA-FF-A7CW-01 8 121282320 121282320 C A COL14A1 Silent p.S1040S 0.23 TCGA-FF-A7CW-01 8 134072549 134072549 T A SLA 5'UTR 0.27 TCGA-FF-A7CW-01 9 107571802 107571802 C T ABCA1 Missense_Mutation p.A1407T 0.17 tolerated(0.13) benign(0.004) TCGA-FF-A7CW-01 9 35377532 35377532 G T UNC13B Missense_Mutation p.K552N 0.05 deleterious(0.04) possibly_damaging(0.881) TCGA-FF-A7CW-01 9 86153282 86153282 C T FRMD3 5'UTR 0.40 TCGA-FF-A7CW-01 X 123020103 123020103 A G XIAP Silent p.Q197Q 0.59 TCGA-FF-A7CW-01 X 142795338 142795338 C A SPANXN2 Missense_Mutation p.D114Y 0.29 deleterious(0) unknown(0) TCGA-FF-A7CW-01 X 15612969 15612969 C T ACE2 Missense_Mutation p.R115Q 0.54 tolerated(0.43) benign(0.003) TCGA-FF-A7CW-01 X 48762343 48762346 GCCG - SLC35A2 Frame_Shift_Del p.F280Lfs*68 0.33 TCGA-FF-A7CW-01 X 83357092 83357092 C A RPS6KA6 Nonsense_Mutation p.G577* 0.52 TCGA-FF-A7CW-01 X 84586012 84586012 C T POF1B Missense_Mutation p.R266H 0.50 deleterious(0.05) probably_damaging(0.999) TCGA-FF-A7CX-01 10 101090081 101090081 G A CNNM1 Missense_Mutation p.G313R 0.08 deleterious(0.01) possibly_damaging(0.611) TCGA-FF-A7CX-01 10 125426000 125426002 TGC - GPR26 In_Frame_Del p.L28del 0.41 TCGA-FF-A7CX-01 10 20432282 20432282 A T PLXDC2 Silent p.A200A 0.39 TCGA-FF-A7CX-01 10 75526107 75526107 G A SEC24C Splice_Site p.X536_splice 0.35 TCGA-FF-A7CX-01 10 81932570 81932570 A T ANXA11 Silent p.A16A 0.12 TCGA-FF-A7CX-01 11 10655535 10655535 G A MRVI1 Silent p.T103T 0.37 TCGA-FF-A7CX-01 11 1272969 1272969 G A MUC5B Silent p.S4953S 0.39 TCGA-FF-A7CX-01 11 26582712 26582712 T C MUC15 Missense_Mutation p.Y329C 0.08 deleterious(0.02) probably_damaging(0.966) TCGA-FF-A7CX-01 11 30915852 30915852 G T DCDC1 Silent p.G1612G 0.44 TCGA-FF-A7CX-01 11 33667420 33667420 C T KIAA1549L Silent p.H1569H 0.50 TCGA-FF-A7CX-01 11 6292143 6292143 G A CCKBR Intron 0.48 TCGA-FF-A7CX-01 11 66133453 66133453 T C SLC29A2 Missense_Mutation p.N338S 0.40 deleterious(0) possibly_damaging(0.866) TCGA-FF-A7CX-01 11 6652558 6652558 G A DCHS1 Silent p.I1252I 0.07 TCGA-FF-A7CX-01 11 67288600 67288600 C T CABP2 Missense_Mutation p.R92Q 0.90 deleterious(0.02) benign(0.221) TCGA-FF-A7CX-01 11 82443473 82443473 G - FAM181B 3'UTR 0.29 TCGA-FF-A7CX-01 11 92714681 92714681 C A MTNR1B Missense_Mutation p.L98I 0.06 deleterious(0.05) probably_damaging(0.946) TCGA-FF-A7CX-01 12 100957437 100957437 C T NR1H4 3'Flank 0.44 TCGA-FF-A7CX-01 12 111089042 111089042 C T HVCN1 Missense_Mutation p.R208Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CX-01 12 113624824 113624824 C T RITA1 Silent p.T91T 0.40 TCGA-FF-A7CX-01 12 129189698 129189698 G A TMEM132C Missense_Mutation p.D729N 0.44 tolerated(0.12) possibly_damaging(0.736) TCGA-FF-A7CX-01 12 20874824 20874824 G T SLCO1C1 Missense_Mutation p.A288S 0.39 tolerated(0.72) benign(0.401) TCGA-FF-A7CX-01 12 21036500 21036500 C T SLCO1B3 Missense_Mutation p.A549V 0.34 deleterious(0) possibly_damaging(0.812) TCGA-FF-A7CX-01 12 46244016 46244016 C T ARID2 Nonsense_Mutation p.Q704* 0.42 TCGA-FF-A7CX-01 12 48174670 48174670 G A SLC48A1 3'UTR 0.42 TCGA-FF-A7CX-01 12 65153012 65153012 G A GNS Silent p.S15S 0.43 TCGA-FF-A7CX-01 12 79842931 79842931 G T SYT1 3'UTR 0.47 TCGA-FF-A7CX-01 12 92539174 92539174 C G BTG1 Missense_Mutation p.E46D 0.51 tolerated(0.39) benign(0.004) TCGA-FF-A7CX-01 13 110831690 110831690 C T COL4A1 Missense_Mutation p.G758R 0.94 probably_damaging(1) TCGA-FF-A7CX-01 13 58207004 58207004 G T PCDH17 Silent p.V108V 0.07 TCGA-FF-A7CX-01 14 100402447 100402447 G A EML1 Missense_Mutation p.R683Q 0.46 deleterious(0) probably_damaging(0.939) TCGA-FF-A7CX-01 14 106329456 106329456 A G IGHJ6 Missense_Mutation p.Y5H 0.69 benign(0.001) TCGA-FF-A7CX-01 14 106329458 106329458 T A IGHJ6 Missense_Mutation p.Y4F 0.70 benign(0.001) TCGA-FF-A7CX-01 14 106330024 106330024 C T IGHJ5 Silent p.%3D 0.47 TCGA-FF-A7CX-01 14 106330067 106330067 C G IGHJ5 Missense_Mutation p.W2C 0.42 benign(0.248) TCGA-FF-A7CX-01 14 106330469 106330469 T C IGHJ4 Translation_Start_Site p.Y1? 0.78 benign(0.019) TCGA-FF-A7CX-01 14 106829685 106829685 A C IGHV4-34 Missense_Mutation p.V93G 0.59 deleterious(0) benign(0.37) TCGA-FF-A7CX-01 14 106829696 106829696 G T IGHV4-34 Silent p.L89L 0.61 TCGA-FF-A7CX-01 14 106829715 106829715 G A IGHV4-34 Missense_Mutation p.T83I 0.64 deleterious(0.04) benign(0.076) TCGA-FF-A7CX-01 14 106829789 106829789 G A IGHV4-34 Silent p.Y58Y 0.71 TCGA-FF-A7CX-01 14 106829817 106829817 G A IGHV4-34 Missense_Mutation p.A49V 0.80 tolerated(0.07) benign(0.007) TCGA-FF-A7CX-01 14 106829833 106829833 G T IGHV4-34 Missense_Mutation p.L44M 0.76 deleterious(0.01) probably_damaging(0.928) TCGA-FF-A7CX-01 14 106829875 106829875 G A IGHV4-34 Silent p.L30L 0.72 TCGA-FF-A7CX-01 14 106877907 106877907 C T IGHV4-39 Silent p.Q29Q 0.17 TCGA-FF-A7CX-01 14 106877913 106877913 C G IGHV4-39 Missense_Mutation p.Q27H 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-FF-A7CX-01 14 38679760 38679760 C T SSTR1 Missense_Mutation p.T389M 0.31 deleterious_low_confidence(0) possibly_damaging(0.535) TCGA-FF-A7CX-01 14 60976600 60976600 G A SIX6 Missense_Mutation p.A162T 0.46 deleterious(0) probably_damaging(0.993) TCGA-FF-A7CX-01 14 65520040 65520040 C T FNTB Missense_Mutation p.A347V 0.44 tolerated(0.31) benign(0.001) TCGA-FF-A7CX-01 14 76620825 76620825 G A GPATCH2L Missense_Mutation p.R40Q 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-FF-A7CX-01 15 101853629 101853629 C T PCSK6 Missense_Mutation p.G883D 0.54 deleterious(0.01) probably_damaging(0.977) TCGA-FF-A7CX-01 15 41859646 41859646 C T TYRO3 Missense_Mutation p.A291V 0.49 tolerated(0.22) possibly_damaging(0.542) TCGA-FF-A7CX-01 15 52487626 52487626 G A MYO5C Missense_Mutation p.P1675L 0.45 deleterious(0) probably_damaging(1) TCGA-FF-A7CX-01 16 16146585 16146585 T C ABCC1 Missense_Mutation p.L462P 0.41 deleterious(0) probably_damaging(0.994) TCGA-FF-A7CX-01 16 29870830 29870830 G T CDIPT Silent p.T143T 0.05 TCGA-FF-A7CX-01 16 48209258 48209258 G A ABCC11 Silent p.G1203G 0.47 TCGA-FF-A7CX-01 16 55705744 55705744 C T SLC6A2 Intron 0.44 TCGA-FF-A7CX-01 16 57171163 57171163 C G CPNE2 Missense_Mutation p.A424G 0.49 deleterious(0.05) possibly_damaging(0.713) TCGA-FF-A7CX-01 16 72007357 72007357 A T PKD1L3 RNA 0.08 TCGA-FF-A7CX-01 17 10293802 10293802 C T MYH8 Missense_Mutation p.R1928Q 0.44 deleterious(0.02) benign(0.382) TCGA-FF-A7CX-01 17 38906791 38906791 G C KRT25 Missense_Mutation p.A339G 0.37 deleterious(0.04) possibly_damaging(0.757) TCGA-FF-A7CX-01 17 39681516 39681516 C T KRT19 Missense_Mutation p.A144T 0.62 tolerated(0.12) probably_damaging(1) TCGA-FF-A7CX-01 17 39775873 39775873 G A KRT17 Silent p.R424R 0.45 TCGA-FF-A7CX-01 17 39967896 39967896 G T LEPREL4 Missense_Mutation p.P91H 0.12 tolerated(0.15) benign(0.181) TCGA-FF-A7CX-01 17 65116527 65116527 G A HELZ Nonsense_Mutation p.R1278* 0.44 TCGA-FF-A7CX-01 18 216549 216549 C T THOC1 Silent p.Q513Q 0.78 TCGA-FF-A7CX-01 18 25572711 25572711 C T CDH2 Missense_Mutation p.A418T 0.06 deleterious(0.04) possibly_damaging(0.577) TCGA-FF-A7CX-01 18 29511319 29511319 C T TRAPPC8 Missense_Mutation p.A109T 0.48 tolerated(0.27) benign(0.009) TCGA-FF-A7CX-01 18 46448230 46448230 C T SMAD7 Missense_Mutation p.A265T 0.44 deleterious(0.02) benign(0.237) TCGA-FF-A7CX-01 18 65178778 65178778 G T DSEL Nonsense_Mutation p.S1033* 0.39 TCGA-FF-A7CX-01 19 10571742 10571742 T A PDE4A Missense_Mutation p.D476E 0.39 deleterious(0) probably_damaging(0.975) TCGA-FF-A7CX-01 19 10671051 10671051 T C KRI1 Missense_Mutation p.N252S 0.24 deleterious(0.03) possibly_damaging(0.831) TCGA-FF-A7CX-01 19 11350375 11350375 C T C19orf80 Missense_Mutation p.A21V 0.30 tolerated(0.53) benign(0.001) TCGA-FF-A7CX-01 19 16436026 16436026 G A KLF2 Splice_Site p.X26_splice 0.39 TCGA-FF-A7CX-01 19 38159521 38159521 A G ZNF781 3'UTR 0.50 TCGA-FF-A7CX-01 19 39950582 39950582 C A SUPT5H Silent p.A202A 0.50 TCGA-FF-A7CX-01 19 44006279 44006279 G A PHLDB3 Missense_Mutation p.R124C 0.50 deleterious(0.01) probably_damaging(0.939) TCGA-FF-A7CX-01 19 50657864 50657864 C T IZUMO2 Missense_Mutation p.V206M 0.38 tolerated(0.05) possibly_damaging(0.791) TCGA-FF-A7CX-01 19 51170329 51170329 C T SHANK1 Missense_Mutation p.E1630K 0.52 unknown(0) TCGA-FF-A7CX-01 19 56538497 56538497 G A NLRP5 Missense_Mutation p.V300M 0.41 tolerated(0.52) benign(0.023) TCGA-FF-A7CX-01 19 880103 880103 C T MED16 Missense_Mutation p.R396Q 0.37 deleterious(0.04) benign(0.012) TCGA-FF-A7CX-01 1 118168243 118168243 C G FAM46C 3'UTR 0.41 TCGA-FF-A7CX-01 1 120529632 120529635 ACAA - NOTCH2 Frame_Shift_Del p.C275Wfs*120 0.43 TCGA-FF-A7CX-01 1 155145757 155145757 G A KRTCAP2 Missense_Mutation p.R8W 0.91 tolerated_low_confidence(0.19) benign(0.118) TCGA-FF-A7CX-01 1 16475116 16475116 C T EPHA2 Missense_Mutation p.V194I 0.50 deleterious(0.01) benign(0.396) TCGA-FF-A7CX-01 1 180471270 180471270 C T ACBD6 Silent p.E44E 0.07 TCGA-FF-A7CX-01 1 198288596 198288596 G A NEK7 Missense_Mutation p.V285I 0.35 tolerated(1) benign(0.002) TCGA-FF-A7CX-01 1 22915717 22915717 G A EPHA8 Intron 0.46 TCGA-FF-A7CX-01 1 23885712 23885712 A G ID3 Missense_Mutation p.I69T 0.55 deleterious(0) probably_damaging(0.997) TCGA-FF-A7CX-01 1 35351360 35351360 G A DLGAP3 Missense_Mutation p.P545S 0.41 deleterious(0.02) probably_damaging(0.994) TCGA-FF-A7CX-01 1 3742332 3742332 T C CEP104 Missense_Mutation p.H785R 0.45 deleterious(0.02) benign(0.444) TCGA-FF-A7CX-01 1 44085859 44085859 C T PTPRF Silent p.I1735I 0.45 TCGA-FF-A7CX-01 1 57480789 57480789 T G DAB1 Missense_Mutation p.D404A 0.39 tolerated(0.13) benign(0.023) TCGA-FF-A7CX-01 1 57481087 57481087 C T DAB1 Missense_Mutation p.A305T 0.08 tolerated(0.14) benign(0.01) TCGA-FF-A7CX-01 1 62962115 62962115 G T DOCK7 Silent p.G1575G 0.42 TCGA-FF-A7CX-01 1 6659369 6659369 C T KLHL21 Missense_Mutation p.A389T 0.05 deleterious(0.03) benign(0.087) TCGA-FF-A7CX-01 20 24565617 24565617 C T SYNDIG1 Silent p.Y202Y 0.49 TCGA-FF-A7CX-01 20 32691340 32691340 G A EIF2S2 Silent p.F75F 0.34 TCGA-FF-A7CX-01 20 44845551 44845551 G A CDH22 Missense_Mutation p.A251V 0.39 tolerated(0.34) benign(0.284) TCGA-FF-A7CX-01 20 44879946 44879946 C T CDH22 5'UTR 0.45 TCGA-FF-A7CX-01 20 48504474 48504474 C T SLC9A8 3'UTR 0.49 TCGA-FF-A7CX-01 22 20077332 20077332 C T DGCR8 Missense_Mutation p.R341W 0.45 deleterious(0) probably_damaging(0.971) TCGA-FF-A7CX-01 22 25251273 25251273 A C SGSM1 Missense_Mutation p.Y182S 0.42 deleterious(0) probably_damaging(1) TCGA-FF-A7CX-01 22 32588988 32588988 G A RFPL2 Missense_Mutation p.R153C 0.38 deleterious(0.04) benign(0.018) TCGA-FF-A7CX-01 22 39421643 39421643 C T APOBEC3D Missense_Mutation p.A191V 0.42 tolerated(0.17) possibly_damaging(0.702) TCGA-FF-A7CX-01 22 50282407 50282407 C T ZBED4 3'UTR 0.38 TCGA-FF-A7CX-01 22 51012005 51012005 G A CPT1B Silent p.D370D 0.44 TCGA-FF-A7CX-01 2 114399439 114399439 G A RABL2A Missense_Mutation p.E196K 0.46 tolerated(0.14) benign(0.305) TCGA-FF-A7CX-01 2 132238015 132238015 T A TUBA3D Missense_Mutation p.V250E 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FF-A7CX-01 2 139429118 139429118 G A NXPH2 Missense_Mutation p.R57C 0.51 deleterious(0) probably_damaging(0.91) TCGA-FF-A7CX-01 2 141571285 141571285 A G LRP1B Missense_Mutation p.L1767S 0.35 possibly_damaging(0.587) TCGA-FF-A7CX-01 2 149226791 149226791 C T MBD5 Nonsense_Mutation p.Q427* 0.40 TCGA-FF-A7CX-01 2 159518079 159518079 C T PKP4 Intron 0.44 TCGA-FF-A7CX-01 2 1680761 1680761 G A PXDN Silent p.T262T 0.45 TCGA-FF-A7CX-01 2 179255816 179255816 C A OSBPL6 Missense_Mutation p.S798Y 0.48 deleterious(0) probably_damaging(0.998) TCGA-FF-A7CX-01 2 183627529 183627529 G A DNAJC10 Splice_Site p.X755_splice 0.51 TCGA-FF-A7CX-01 2 20451242 20451242 A T PUM2 3'UTR 0.33 TCGA-FF-A7CX-01 2 207017231 207017231 C T NDUFS1 Missense_Mutation p.R36Q 0.41 tolerated(0.05) benign(0.007) TCGA-FF-A7CX-01 2 228125811 228125811 C T COL4A3 Silent p.P376P 0.42 TCGA-FF-A7CX-01 2 228564154 228564154 T G SLC19A3 Missense_Mutation p.T93P 0.42 deleterious(0) benign(0.25) TCGA-FF-A7CX-01 2 230312065 230312065 C T DNER Missense_Mutation p.V485M 0.54 deleterious(0.02) benign(0.067) TCGA-FF-A7CX-01 2 234652351 234652351 G A UGT1A10 Intron 0.41 TCGA-FF-A7CX-01 2 37193498 37193498 C T STRN Missense_Mutation p.A37T 0.43 tolerated(0.56) benign(0) TCGA-FF-A7CX-01 2 39552696 39552696 T A MAP4K3 Missense_Mutation p.H294L 0.40 tolerated(0.25) probably_damaging(0.993) TCGA-FF-A7CX-01 2 61414008 61414011 TCTT - AHSA2 3'UTR 0.29 TCGA-FF-A7CX-01 2 63281215 63281215 C T OTX1 Missense_Mutation p.T44I 0.19 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CX-01 2 63661025 63661025 G A WDPCP Nonsense_Mutation p.R227* 0.41 TCGA-FF-A7CX-01 2 77745577 77745577 G T LRRTM4 Missense_Mutation p.S473Y 0.30 tolerated(0.06) possibly_damaging(0.675) TCGA-FF-A7CX-01 2 89160110 89160110 A T IGKJ5 Missense_Mutation p.F4I 0.28 unknown(0) TCGA-FF-A7CX-01 2 89442289 89442289 G T IGKV3-20 Missense_Mutation p.A39D 0.69 deleterious(0) possibly_damaging(0.604) TCGA-FF-A7CX-01 3 147128137 147128137 C A ZIC1 Missense_Mutation p.H80N 0.24 tolerated(0.12) probably_damaging(0.994) TCGA-FF-A7CX-01 3 172163205 172163205 G A GHSR Nonsense_Mutation p.R283* 0.48 TCGA-FF-A7CX-01 3 38182292 38182292 G A MYD88 Missense_Mutation p.S251N 0.42 deleterious(0) probably_damaging(0.917) TCGA-FF-A7CX-01 4 165962056 165962056 A T TRIM60 Missense_Mutation p.S278C 0.40 tolerated(0.09) benign(0.016) TCGA-FF-A7CX-01 4 44450163 44450163 C T KCTD8 Silent p.E126E 0.55 TCGA-FF-A7CX-01 4 66356412 66356412 C T EPHA5 Missense_Mutation p.R362Q 0.45 tolerated(0.39) possibly_damaging(0.666) TCGA-FF-A7CX-01 4 7436076 7436076 C A PSAPL1 Missense_Mutation p.Q177H 0.34 deleterious(0.03) possibly_damaging(0.598) TCGA-FF-A7CX-01 4 7436077 7436077 T A PSAPL1 Missense_Mutation p.Q177L 0.33 tolerated(0.14) benign(0.003) TCGA-FF-A7CX-01 4 76452235 76452235 C T THAP6 Silent p.G160G 0.43 TCGA-FF-A7CX-01 4 78783928 78783928 G A MRPL1 5'UTR 0.30 TCGA-FF-A7CX-01 4 8470149 8470149 G A TRMT44 Intron 0.12 TCGA-FF-A7CX-01 5 101834271 101834271 C T SLCO6A1 Missense_Mutation p.C93Y 0.40 deleterious(0.01) possibly_damaging(0.898) TCGA-FF-A7CX-01 5 102364877 102364877 G A PAM 3'Flank 0.71 TCGA-FF-A7CX-01 5 141243763 141243763 G C PCDH1 Missense_Mutation p.N711K 0.26 deleterious(0) probably_damaging(0.999) TCGA-FF-A7CX-01 5 143586142 143586142 A T KCTD16 5'UTR 0.29 TCGA-FF-A7CX-01 5 148930448 148930448 G C CSNK1A1 Missense_Mutation p.S27C 0.95 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-FF-A7CX-01 5 149901002 149901002 G T NDST1 Silent p.V62V 0.07 TCGA-FF-A7CX-01 5 159626158 159626158 G T FABP6 Silent p.L15L 0.07 TCGA-FF-A7CX-01 5 16616885 16616885 C T FAM134B Missense_Mutation p.A66T 0.30 tolerated(0.16) unknown(0) TCGA-FF-A7CX-01 5 178391738 178391738 G T ZNF454 Missense_Mutation p.K111N 0.94 tolerated(0.47) benign(0.001) TCGA-FF-A7CX-01 5 23526712 23526712 T C PRDM9 Silent p.N505N 0.51 TCGA-FF-A7CX-01 6 138192658 138192659 - GG TNFAIP3 Frame_Shift_Ins 0.46 TCGA-FF-A7CX-01 6 26031883 26031883 C - HIST1H3B Frame_Shift_Del p.A136Rfs*? 0.32 TCGA-FF-A7CX-01 6 27219672 27219672 G A PRSS16 Silent p.A287A 0.43 TCGA-FF-A7CX-01 6 29578720 29578720 G T GABBR1 Silent p.S563S 0.12 TCGA-FF-A7CX-01 6 34957033 34957033 G A ANKS1A Silent p.P414P 0.47 TCGA-FF-A7CX-01 6 50791293 50791293 C A TFAP2B Silent p.P85P 0.46 TCGA-FF-A7CX-01 6 99998133 99998133 T G CCNC Missense_Mutation p.Q164P 0.79 tolerated(0.1) benign(0.14) TCGA-FF-A7CX-01 7 100226979 100226979 G A TFR2 Silent p.I429I 0.69 TCGA-FF-A7CX-01 7 100352874 100352874 C T ZAN Silent p.Y1050Y 0.59 TCGA-FF-A7CX-01 7 121942102 121942102 C T FEZF1 Silent p.P459P 0.42 TCGA-FF-A7CX-01 7 151896389 151896389 C T KMT2C Silent p.S1416S 0.40 TCGA-FF-A7CX-01 7 27204938 27204938 C T HOXA9 Missense_Mutation p.E47K 0.36 deleterious(0.01) benign(0.253) TCGA-FF-A7CX-01 7 2987283 2987283 C T CARD11 Missense_Mutation p.C49Y 0.23 deleterious(0) probably_damaging(1) TCGA-FF-A7CX-01 7 54617588 54617588 A G VSTM2A Missense_Mutation p.K120R 0.03 deleterious(0.03) possibly_damaging(0.856) TCGA-FF-A7CX-01 8 143695095 143695095 C T ARC Missense_Mutation p.A180T 0.83 tolerated_low_confidence(0.26) benign(0.001) TCGA-FF-A7CX-01 8 145160665 145160665 G T MAF1 Missense_Mutation p.G27C 0.87 deleterious(0) probably_damaging(0.998) TCGA-FF-A7CX-01 8 17409423 17409423 C T SLC7A2 Missense_Mutation p.A368V 0.03 deleterious(0.04) probably_damaging(0.953) TCGA-FF-A7CX-01 8 72756467 72756467 C T RP11-383H13.1 Missense_Mutation p.R103C 1.00 unknown(0) TCGA-FF-A7CX-01 9 100071801 100071801 G A CCDC180 Missense_Mutation p.E103K 0.48 tolerated(0.06) possibly_damaging(0.631) TCGA-FF-A7CX-01 9 116346320 116346320 G T RGS3 Silent p.S876S 0.29 TCGA-FF-A7CX-01 9 131790419 131790419 C T SH3GLB2 Missense_Mutation p.M5I 0.41 deleterious(0.04) benign(0.068) TCGA-FF-A7CX-01 X 107975873 107975873 G A IRS4 Silent p.D1234D 0.86 TCGA-FF-A7CX-01 X 115584183 115584183 T A SLC6A14 Silent p.G387G 0.81 TCGA-FF-A7CX-01 X 115584299 115584299 C - SLC6A14 Frame_Shift_Del p.A426Vfs*17 0.47 TCGA-FF-A7CX-01 X 1585333 1585333 C T P2RY8 Missense_Mutation p.G40D 0.86 deleterious(0.03) probably_damaging(0.966) TCGA-FF-A7CX-01 X 21676439 21676439 G A KLHL34 5'UTR 0.93 TCGA-FF-A7CX-01 X 43809178 43809178 C T NDP Missense_Mutation p.R90H 0.93 deleterious(0.01) probably_damaging(0.995) TCGA-FF-A7CX-01 X 63444983 63444983 C T ASB12 Missense_Mutation p.G183D 0.90 deleterious(0.01) probably_damaging(1) TCGA-FF-A7CX-01 X 69261726 69261726 G A AWAT2 Missense_Mutation p.R312C 0.82 tolerated(0.24) benign(0.012) TCGA-GR-A4D4-01 10 124895657 124895657 T C HMX3 Missense_Mutation p.F31L 0.41 deleterious(0) probably_damaging(0.97) TCGA-GR-A4D4-01 10 5567910 5567910 G T CALML3 3'UTR 0.07 TCGA-GR-A4D4-01 10 90770574 90770574 T A FAS Splice_Site p.X190_splice 0.38 TCGA-GR-A4D4-01 11 103070165 103070165 G C DYNC2H1 Missense_Mutation p.R2683T 0.33 possibly_damaging(0.708) TCGA-GR-A4D4-01 11 108202718 108202718 G C ATM Missense_Mutation p.S2581T 0.26 tolerated(0.33) benign(0.017) TCGA-GR-A4D4-01 11 117109653 117109653 T C RNF214 Silent p.N148N 0.20 TCGA-GR-A4D4-01 11 17631689 17631689 G A OTOG Silent p.P1626P 0.21 TCGA-GR-A4D4-01 11 3661044 3661044 G A ART5 Silent p.C205C 0.29 TCGA-GR-A4D4-01 11 44092850 44092850 C T ACCS Silent p.D111D 0.20 TCGA-GR-A4D4-01 11 46397091 46397091 T G DGKZ Missense_Mutation p.L795R 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-GR-A4D4-01 11 61723330 61723330 C T BEST1 Missense_Mutation p.R70C 0.24 deleterious(0.01) probably_damaging(0.964) TCGA-GR-A4D4-01 11 66294208 66294208 G T BBS1 Missense_Mutation p.M423I 0.18 tolerated(1) benign(0.001) TCGA-GR-A4D4-01 11 8646767 8646767 G A TRIM66 Silent p.T626T 0.26 TCGA-GR-A4D4-01 11 94602519 94602519 G A AMOTL1 Missense_Mutation p.S882N 0.29 tolerated(0.22) benign(0.094) TCGA-GR-A4D4-01 12 104071379 104071379 G A STAB2 Missense_Mutation p.G932D 0.13 deleterious(0) probably_damaging(0.999) TCGA-GR-A4D4-01 12 116408551 116408551 A C MED13L Missense_Mutation p.F1972C 0.15 deleterious(0) probably_damaging(0.998) TCGA-GR-A4D4-01 12 122257461 122257461 G A SETD1B Silent p.E1147E 0.07 TCGA-GR-A4D4-01 12 21998615 21998615 C T ABCC9 Silent p.S1006S 0.36 TCGA-GR-A4D4-01 12 56676685 56676685 A C CS Missense_Mutation p.F120V 0.29 deleterious(0.02) possibly_damaging(0.809) TCGA-GR-A4D4-01 12 56676766 56676766 A C CS Missense_Mutation p.F93V 0.28 deleterious(0) probably_damaging(0.992) TCGA-GR-A4D4-01 12 63182066 63182066 G T PPM1H Missense_Mutation p.T270K 0.07 deleterious(0.04) probably_damaging(1) TCGA-GR-A4D4-01 13 108884000 108884000 C A ABHD13 3'UTR 0.32 TCGA-GR-A4D4-01 13 108886599 108886599 C G ABHD13 3'UTR 0.40 TCGA-GR-A4D4-01 13 111340323 111340323 C A CARS2 Missense_Mutation p.D146Y 0.29 deleterious(0) probably_damaging(0.976) TCGA-GR-A4D4-01 13 111340329 111340329 C T CARS2 Missense_Mutation p.E144K 0.30 deleterious(0) probably_damaging(0.999) TCGA-GR-A4D4-01 13 111340366 111340366 C A CARS2 Splice_Site p.X132_splice 0.31 TCGA-GR-A4D4-01 13 111531907 111531907 C T ANKRD10 3'UTR 0.46 TCGA-GR-A4D4-01 13 111532094 111532094 C G ANKRD10 Missense_Mutation p.E385Q 0.56 deleterious(0.03) probably_damaging(0.997) TCGA-GR-A4D4-01 13 25479846 25479846 A G CENPJ Missense_Mutation p.V777A 0.46 tolerated(0.66) benign(0.002) TCGA-GR-A4D4-01 14 106330022 106330027 ACCTGA - IGHJ5 Missense_Mutation 0.16 TCGA-GR-A4D4-01 14 106330044 106330044 G A IGHJ5 Missense_Mutation p.T10I 0.13 possibly_damaging(0.737) TCGA-GR-A4D4-01 14 106725637 106725637 G A IGHV3-23 Silent p.S6S 0.15 TCGA-GR-A4D4-01 14 106725649 106725649 C T IGHV3-23 Silent p.E2E 0.19 TCGA-GR-A4D4-01 14 107178867 107178867 T G IGHV2-70 Missense_Mutation p.T104P 0.19 deleterious(0) possibly_damaging(0.599) TCGA-GR-A4D4-01 14 107179010 107179010 C G IGHV2-70 Missense_Mutation p.S56T 0.17 tolerated(0.16) benign(0.024) TCGA-GR-A4D4-01 14 38061145 38061145 T G FOXA1 Missense_Mutation p.S282R 0.26 tolerated(0.57) benign(0.08) TCGA-GR-A4D4-01 14 55817618 55817618 T G FBXO34 Silent p.V170V 0.24 TCGA-GR-A4D4-01 14 64165346 64165346 G T SGPP1 Missense_Mutation p.P239T 0.22 tolerated(0.27) benign(0.014) TCGA-GR-A4D4-01 14 64921449 64921449 G A MTHFD1 Silent p.G858G 0.36 TCGA-GR-A4D4-01 14 69619696 69619696 G T DCAF5 5'UTR 0.25 TCGA-GR-A4D4-01 14 81329188 81329188 C A CEP128 Missense_Mutation p.Q225H 0.44 deleterious(0) possibly_damaging(0.83) TCGA-GR-A4D4-01 14 92403290 92403290 C A FBLN5 Splice_Site p.X127_splice 0.24 TCGA-GR-A4D4-01 15 22742753 22742753 C T GOLGA6L1 Missense_Mutation p.R380W 0.30 unknown(0) TCGA-GR-A4D4-01 16 12009383 12009383 G C GSPT1 Missense_Mutation p.F65L 0.21 tolerated_low_confidence(0.27) benign(0.014) TCGA-GR-A4D4-01 16 24557518 24557518 T A RBBP6 Missense_Mutation p.N67K 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GR-A4D4-01 16 30537265 30537265 C G ZNF768 Missense_Mutation p.E66Q 0.21 deleterious_low_confidence(0.02) benign(0.105) TCGA-GR-A4D4-01 16 3786764 3786764 T A CREBBP Missense_Mutation p.I1483F 0.22 unknown(0) TCGA-GR-A4D4-01 16 841239 841239 C T CHTF18 Missense_Mutation p.P325S 0.54 tolerated(0.07) benign(0.063) TCGA-GR-A4D4-01 17 10415745 10415745 G T MYH1 Missense_Mutation p.A376D 0.07 deleterious(0) probably_damaging(1) TCGA-GR-A4D4-01 17 47696644 47696644 A T SPOP Missense_Mutation p.F102I 0.28 deleterious(0.04) probably_damaging(1) TCGA-GR-A4D4-01 17 62290034 62290034 A T TEX2 Missense_Mutation p.F515Y 0.28 deleterious(0.03) benign(0.3) TCGA-GR-A4D4-01 17 62290117 62290117 G T TEX2 Silent p.L487L 0.30 TCGA-GR-A4D4-01 17 64881273 64881273 C T CACNG5 Silent p.S248S 0.36 TCGA-GR-A4D4-01 17 7574035 7574035 T C TP53 Splice_Site p.X332_splice 0.41 TCGA-GR-A4D4-01 18 60986206 60986206 C G BCL2 5'UTR 0.33 TCGA-GR-A4D4-01 18 60986268 60986268 C T BCL2 5'UTR 0.38 TCGA-GR-A4D4-01 18 60986282 60986282 C A BCL2 5'UTR 0.45 TCGA-GR-A4D4-01 19 14043787 14043787 G A PODNL1 Missense_Mutation p.P424S 0.34 deleterious(0.01) probably_damaging(1) TCGA-GR-A4D4-01 19 38931449 38931449 C T RYR1 Missense_Mutation p.A37V 0.29 benign(0.367) TCGA-GR-A4D4-01 19 42600030 42600030 T C POU2F2 Missense_Mutation p.T239A 0.31 deleterious(0) probably_damaging(0.981) TCGA-GR-A4D4-01 19 47258887 47258887 C G FKRP Missense_Mutation p.D60E 0.53 tolerated(1) benign(0.008) TCGA-GR-A4D4-01 1 150256253 150256253 C T C1orf51 Silent p.D135D 0.28 TCGA-GR-A4D4-01 1 159166170 159166170 G C CADM3 Missense_Mutation p.M270I 0.25 deleterious(0.02) benign(0.014) TCGA-GR-A4D4-01 1 186306183 186306183 A T TPR Missense_Mutation p.S1490T 0.21 benign(0.153) TCGA-GR-A4D4-01 1 19503103 19503103 G C UBR4 Missense_Mutation p.S919C 0.31 benign(0.155) TCGA-GR-A4D4-01 1 197069752 197069752 T G ASPM Missense_Mutation p.K2877Q 0.27 tolerated(0.34) possibly_damaging(0.71) TCGA-GR-A4D4-01 1 214505638 214505638 G A SMYD2 Intron 0.33 TCGA-GR-A4D4-01 1 21928279 21928279 G A RAP1GAP Missense_Mutation p.P581L 0.23 tolerated(0.24) benign(0.221) TCGA-GR-A4D4-01 1 228564799 228564799 C T OBSCN Missense_Mutation p.R8653W 0.31 possibly_damaging(0.648) TCGA-GR-A4D4-01 1 235590506 235590506 T C TBCE Missense_Mutation p.V171A 0.35 deleterious(0.01) probably_damaging(0.968) TCGA-GR-A4D4-01 1 238049158 238049158 T G ZP4 Missense_Mutation p.S290R 0.25 tolerated(0.13) benign(0.02) TCGA-GR-A4D4-01 1 27101097 27101097 G C ARID1A Missense_Mutation p.G1460A 0.31 unknown(0) TCGA-GR-A4D4-01 1 34174918 34174918 C - CSMD2 Intron 0.14 TCGA-GR-A4D4-01 1 53755315 53755315 G C LRP8 Missense_Mutation p.H97Q 0.20 tolerated(1) probably_damaging(0.959) TCGA-GR-A4D4-01 1 63300503 63300503 A C ATG4C Missense_Mutation p.I357L 0.20 tolerated(0.25) benign(0.043) TCGA-GR-A4D4-01 1 74670196 74670196 C T FPGT Silent p.P155P 0.35 TCGA-GR-A4D4-01 20 23967265 23967265 C T GGTLC1 5'UTR 0.28 TCGA-GR-A4D4-01 20 3007337 3007337 T G PTPRA Nonsense_Mutation p.L540* 0.30 TCGA-GR-A4D4-01 20 46331406 46331406 C T SULF2 Missense_Mutation p.G142R 0.23 deleterious(0) probably_damaging(1) TCGA-GR-A4D4-01 21 38862627 38862627 C T DYRK1A Missense_Mutation p.A272V 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-GR-A4D4-01 21 41301086 41301086 T A PCP4 3'UTR 0.17 TCGA-GR-A4D4-01 22 23223439 23223439 G C IGLV3-1 Missense_Mutation p.S70T 0.22 tolerated(0.13) benign(0.008) TCGA-GR-A4D4-01 22 23230192 23230192 T A IGLL5 5'UTR 0.35 TCGA-GR-A4D4-01 2 112686813 112686813 C A MERTK Missense_Mutation p.Q60K 0.25 tolerated_low_confidence(0.11) benign(0.304) TCGA-GR-A4D4-01 2 11955228 11955228 T A LPIN1 Missense_Mutation p.F804Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-GR-A4D4-01 2 217347739 217347739 C A SMARCAL1 3'UTR 0.15 TCGA-GR-A4D4-01 2 223504317 223504317 A T FARSB Nonsense_Mutation p.L146* 0.19 TCGA-GR-A4D4-01 2 228172583 228172583 G A COL4A3 Silent p.G1470G 0.26 TCGA-GR-A4D4-01 2 228881444 228881444 C T SPHKAP Missense_Mutation p.V1376I 0.24 tolerated(0.23) benign(0.008) TCGA-GR-A4D4-01 2 238726642 238726647 ATTACC G RBM44 Frame_Shift_Del p.L362Tfs*3 0.16 TCGA-GR-A4D4-01 2 42557485 42557485 T A EML4 3'UTR 0.36 TCGA-GR-A4D4-01 2 62065671 62065671 A G FAM161A Splice_Site p.X584_splice 0.23 TCGA-GR-A4D4-01 2 89160403 89160403 A T IGKJ4 Missense_Mutation p.I11N 0.34 benign(0.094) TCGA-GR-A4D4-01 2 89160412 89160412 T A IGKJ4 Missense_Mutation p.K8M 0.36 benign(0.16) TCGA-GR-A4D4-01 2 89399593 89399593 A G IGKV1-16 Missense_Mutation p.V37A 0.19 tolerated(0.09) possibly_damaging(0.47) TCGA-GR-A4D4-01 2 89399610 89399610 G C IGKV1-16 Silent p.S31S 0.22 TCGA-GR-A4D4-01 3 124376341 124376341 G A KALRN Missense_Mutation p.R61Q 0.32 deleterious(0.05) benign(0.085) TCGA-GR-A4D4-01 3 125238980 125238980 G A SNX4 Nonsense_Mutation p.Q13* 0.22 TCGA-GR-A4D4-01 3 126732931 126732931 T G PLXNA1 Missense_Mutation p.F794L 0.28 tolerated(0.16) benign(0.019) TCGA-GR-A4D4-01 4 178355534 178355534 A G AGA Splice_Site p.X269_splice 0.28 TCGA-GR-A4D4-01 4 2743956 2743956 A T TNIP2 3'UTR 0.26 TCGA-GR-A4D4-01 4 2743958 2743958 G C TNIP2 3'UTR 0.26 TCGA-GR-A4D4-01 4 48835428 48835428 T A OCIAD1 Silent p.P23P 0.25 TCGA-GR-A4D4-01 5 133509614 133509614 T A SKP1 Intron 0.28 TCGA-GR-A4D4-01 5 134118702 134118702 T G DDX46 Missense_Mutation p.I371M 0.28 deleterious(0) probably_damaging(0.977) TCGA-GR-A4D4-01 5 143539868 143539868 G C YIPF5 3'UTR 0.26 TCGA-GR-A4D4-01 5 167645245 167645245 C T TENM2 Missense_Mutation p.A1450V 0.26 deleterious(0.02) probably_damaging(0.981) TCGA-GR-A4D4-01 5 36227596 36227596 A C NADK2 Missense_Mutation p.H124Q 0.15 tolerated(0.42) benign(0.011) TCGA-GR-A4D4-01 5 60831355 60831355 G A ZSWIM6 Missense_Mutation p.V764I 0.31 tolerated(0.09) possibly_damaging(0.572) TCGA-GR-A4D4-01 5 73930903 73930903 T C ENC1 Missense_Mutation p.N470D 0.37 tolerated(0.3) probably_damaging(0.94) TCGA-GR-A4D4-01 6 114262899 114262899 T A HDAC2 Missense_Mutation p.N470I 0.28 tolerated(0.24) benign(0) TCGA-GR-A4D4-01 6 114262912 114262912 T G HDAC2 Missense_Mutation p.K466Q 0.25 tolerated(0.26) benign(0.088) TCGA-GR-A4D4-01 6 22570346 22570347 - GGC HDGFL1 In_Frame_Ins p.A188dup 0.29 TCGA-GR-A4D4-01 6 26056500 26056500 C T HIST1H1C Missense_Mutation p.E53K 0.56 deleterious(0) probably_damaging(0.995) TCGA-GR-A4D4-01 6 30652888 30652888 G T PPP1R18 Missense_Mutation p.A303D 0.07 deleterious_low_confidence(0.02) benign(0.296) TCGA-GR-A4D4-01 6 30692031 30692031 T C TUBB Missense_Mutation p.Y398H 0.22 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-GR-A4D4-01 6 36454876 36454876 A C KCTD20 Missense_Mutation p.H395P 0.22 tolerated_low_confidence(0.65) benign(0.011) TCGA-GR-A4D4-01 6 56006741 56006741 G T COL21A1 Missense_Mutation p.S492Y 0.22 tolerated(0.85) probably_damaging(0.964) TCGA-GR-A4D4-01 7 105254603 105254603 G A ATXN7L1 Silent p.P726P 0.28 TCGA-GR-A4D4-01 7 27186929 27186929 G A HOXA6 Missense_Mutation p.A147V 0.20 tolerated(0.12) probably_damaging(0.939) TCGA-GR-A4D4-01 7 2977614 2977614 T A CARD11 Missense_Mutation p.D357V 0.54 deleterious(0) probably_damaging(1) TCGA-GR-A4D4-01 7 37907335 37907335 C G NME8 Missense_Mutation p.T218R 0.21 deleterious(0.01) probably_damaging(0.93) TCGA-GR-A4D4-01 7 72430329 72430329 G A TRIM74 3'UTR 0.39 TCGA-GR-A4D4-01 8 101541987 101541987 A T ANKRD46 Missense_Mutation p.F25L 0.26 tolerated(1) benign(0.418) TCGA-GR-A4D4-01 8 102212299 102212299 G T ZNF706 Missense_Mutation p.F54L 0.04 tolerated(0.31) unknown(0) TCGA-GR-A4D4-01 8 103309773 103309773 A T UBR5 Silent p.G1162G 0.30 TCGA-GR-A4D4-01 8 17409482 17409482 G A SLC7A2 Missense_Mutation p.A388T 0.30 deleterious(0.02) possibly_damaging(0.875) TCGA-GR-A4D4-01 8 22472491 22472491 T A CCAR2 Silent p.I394I 0.30 TCGA-GR-A4D4-01 8 42940407 42940407 A T FNTA Silent p.P374P 0.28 TCGA-GR-A4D4-01 8 623759 623759 T G ERICH1 Missense_Mutation p.E198A 0.15 deleterious(0.03) possibly_damaging(0.766) TCGA-GR-A4D4-01 9 125923280 125923280 A G STRBP Silent p.S201S 0.29 TCGA-GR-A4D4-01 9 131821550 131821550 G A FAM73B Missense_Mutation p.E265K 0.28 tolerated(0.1) probably_damaging(0.936) TCGA-GR-A4D4-01 9 2039809 2039809 G A SMARCA2 Silent p.Q233Q 0.15 TCGA-GR-A4D4-01 9 27204915 27204915 C T TEK Missense_Mutation p.A739V 0.30 tolerated(0.46) benign(0.029) TCGA-GR-A4D4-01 9 84547575 84547575 G A RP11-383M4.6 Intron 0.25 TCGA-GR-A4D4-01 9 86618826 86618826 T G RMI1 3'UTR 0.25 TCGA-GR-A4D4-01 9 98241333 98241333 G C PTCH1 Missense_Mutation p.N388K 0.27 deleterious(0.01) possibly_damaging(0.889) TCGA-GR-A4D4-01 X 106143825 106143825 C A RIPPLY1 3'UTR 0.26 TCGA-GR-A4D4-01 X 153524075 153524075 T G TKTL1 5'UTR 0.53 TCGA-GR-A4D5-01 10 5248268 5248268 G A AKR1C4 Missense_Mutation p.A160T 0.08 tolerated(1) benign(0.021) TCGA-GR-A4D5-01 10 70551233 70551233 G T CCAR1 3'UTR 0.10 TCGA-GR-A4D5-01 11 1021250 1021250 T G MUC6 Missense_Mutation p.Y1185S 0.08 unknown(0) TCGA-GR-A4D5-01 11 118526582 118526582 C T PHLDB1 Missense_Mutation p.R1325C 0.24 tolerated(0.05) benign(0.003) TCGA-GR-A4D5-01 11 57958226 57958226 C T OR9Q2 Silent p.H88H 0.21 TCGA-GR-A4D5-01 11 6412880 6412880 C T SMPD1 Silent p.A195A 0.34 TCGA-GR-A4D5-01 12 104031890 104031890 G A STAB2 Missense_Mutation p.R269H 0.07 tolerated(0.89) benign(0.002) TCGA-GR-A4D5-01 12 109278847 109278847 G A DAO Missense_Mutation p.R22H 0.12 tolerated(0.38) benign(0.003) TCGA-GR-A4D5-01 12 111066588 111066588 C T TCTN1 Silent p.S163S 0.08 TCGA-GR-A4D5-01 12 132905642 132905642 G A RP13-895J2.7 5'Flank 0.07 TCGA-GR-A4D5-01 12 18443868 18443868 C G PIK3C2G Missense_Mutation p.Q281E 0.12 tolerated(0.31) benign(0.005) TCGA-GR-A4D5-01 12 53775499 53775499 G T SP1 Missense_Mutation p.G22C 0.04 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-GR-A4D5-01 12 75601404 75601404 G A KCNC2 Silent p.T120T 0.08 TCGA-GR-A4D5-01 14 106321661 106321661 G C IGHM Missense_Mutation p.S191R 0.06 tolerated(0.13) possibly_damaging(0.52) TCGA-GR-A4D5-01 14 106321914 106321914 G A IGHM Missense_Mutation p.A107V 0.08 tolerated(0.32) benign(0.004) TCGA-GR-A4D5-01 14 106322192 106322192 G C IGHM Nonsense_Mutation p.Y44* 0.11 TCGA-GR-A4D5-01 14 106322194 106322194 A T IGHM Missense_Mutation p.Y44N 0.11 tolerated(1) benign(0.31) TCGA-GR-A4D5-01 14 106791206 106791206 G A IGHV3-30 Silent p.S50S 0.16 TCGA-GR-A4D5-01 15 74627367 74627367 C T CCDC33 Missense_Mutation p.R693W 0.06 deleterious(0) probably_damaging(0.988) TCGA-GR-A4D5-01 17 1183623 1183623 G A TUSC5 Missense_Mutation p.V110I 0.08 tolerated(0.13) benign(0.269) TCGA-GR-A4D5-01 17 15510965 15510965 G A RP11-385D13.1 Silent p.N695N 0.06 TCGA-GR-A4D5-01 18 12420448 12420448 C T SLMO1 Missense_Mutation p.R53C 0.08 deleterious(0) probably_damaging(0.998) TCGA-GR-A4D5-01 18 47812268 47812268 G A CXXC1 Missense_Mutation p.R164W 0.09 deleterious(0) probably_damaging(0.992) TCGA-GR-A4D5-01 18 56171335 56171335 C T ALPK2 Silent p.P2025P 0.07 TCGA-GR-A4D5-01 18 61255917 61255917 G A SERPINB13 Missense_Mutation p.A6T 0.08 tolerated(0.49) benign(0.016) TCGA-GR-A4D5-01 19 1086123 1086123 G A HMHA1 3'UTR 0.23 TCGA-GR-A4D5-01 19 1089905 1089905 T C POLR2E Missense_Mutation p.Y182C 0.12 deleterious(0) probably_damaging(1) TCGA-GR-A4D5-01 19 38384696 38384696 C T WDR87 Silent p.R510R 0.07 TCGA-GR-A4D5-01 19 39227194 39227194 C G CAPN12 Missense_Mutation p.E458Q 0.08 tolerated(0.14) benign(0.011) TCGA-GR-A4D5-01 19 53014878 53014878 C T ZNF578 Missense_Mutation p.S415L 0.10 tolerated(0.23) benign(0.014) TCGA-GR-A4D5-01 19 9407194 9407194 C A ZNF699 Nonsense_Mutation p.E296* 0.08 TCGA-GR-A4D5-01 1 161326591 161326591 C T SDHC Silent p.F122F 0.07 TCGA-GR-A4D5-01 1 201017780 201017780 G A CACNA1S Silent p.S1457S 0.08 TCGA-GR-A4D5-01 1 206329027 206329027 C T CTSE Silent p.P331P 0.08 TCGA-GR-A4D5-01 1 220440147 220440147 T C RAB3GAP2 Intron 0.10 TCGA-GR-A4D5-01 1 44057100 44057100 G A PTPRF Silent p.A469A 0.10 TCGA-GR-A4D5-01 1 6196687 6196687 G T CHD5 Silent p.V862V 0.09 TCGA-GR-A4D5-01 1 94032925 94032925 C G BCAR3 Missense_Mutation p.C737S 0.04 deleterious(0.04) probably_damaging(1) TCGA-GR-A4D5-01 1 94341909 94341909 T C DNTTIP2 Missense_Mutation p.S528G 0.07 tolerated(0.09) benign(0.164) TCGA-GR-A4D5-01 20 6751116 6751116 G C BMP2 Missense_Mutation p.E115Q 0.08 tolerated(0.26) probably_damaging(0.982) TCGA-GR-A4D5-01 21 38592721 38592721 C T DSCR3 3'Flank 0.17 TCGA-GR-A4D5-01 21 46078207 46078207 G A KRTAP12-3 3'UTR 0.13 TCGA-GR-A4D5-01 22 20073512 20073512 C T DGCR8 Missense_Mutation p.P9L 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GR-A4D5-01 22 23090294 23090294 A C IGLV3-16 Missense_Mutation p.E78A 0.10 deleterious(0) possibly_damaging(0.47) TCGA-GR-A4D5-01 22 23090363 23090363 A G IGLV3-16 Missense_Mutation p.E101G 0.07 deleterious(0.02) benign(0.34) TCGA-GR-A4D5-01 22 23248759 23248759 A C IGLC3 Missense_Mutation p.R83S 0.03 benign(0) TCGA-GR-A4D5-01 22 23248762 23248762 C T IGLC3 Silent p.S84S 0.05 TCGA-GR-A4D5-01 22 23495232 23495232 T G RAB36 Missense_Mutation p.N146K 0.17 tolerated(0.18) probably_damaging(0.948) TCGA-GR-A4D5-01 22 23523613 23523613 T C BCR Missense_Mutation p.S156P 0.06 deleterious_low_confidence(0) benign(0.307) TCGA-GR-A4D5-01 2 136875620 136875620 A C CXCR4 5'Flank 0.09 TCGA-GR-A4D5-01 2 202122900 202122900 T G CASP8 5'UTR 0.09 TCGA-GR-A4D5-01 2 21239442 21239442 C T APOB Silent p.P1067P 0.09 TCGA-GR-A4D5-01 2 50765586 50765586 C T NRXN1 Missense_Mutation p.D690N 0.12 tolerated(0.23) probably_damaging(0.999) TCGA-GR-A4D5-01 2 96781704 96781704 G A ADRA2B Missense_Mutation p.A62V 0.08 deleterious(0) possibly_damaging(0.857) TCGA-GR-A4D5-01 3 42703053 42703055 AGA - ZBTB47 In_Frame_Del p.K519del 0.11 TCGA-GR-A4D5-01 3 62189308 62189308 C T PTPRG Silent p.H613H 0.12 TCGA-GR-A4D5-01 4 55968617 55968617 T G KDR Missense_Mutation p.E682D 0.05 tolerated(0.95) benign(0.38) TCGA-GR-A4D5-01 4 8608504 8608504 C T CPZ Missense_Mutation p.A316V 0.09 deleterious(0.03) possibly_damaging(0.683) TCGA-GR-A4D5-01 4 90034738 90034738 A G TIGD2 Missense_Mutation p.S205G 0.07 tolerated(0.18) benign(0.034) TCGA-GR-A4D5-01 5 140186810 140186810 G A PCDHA4 Missense_Mutation p.R13H 0.07 tolerated_low_confidence(0.27) benign(0.003) TCGA-GR-A4D5-01 5 140257190 140257190 G C PCDHA12 Silent p.L711L 0.13 TCGA-GR-A4D5-01 5 140307057 140307057 G A PCDHAC1 Missense_Mutation p.E194K 0.08 deleterious(0) probably_damaging(1) TCGA-GR-A4D5-01 5 140755640 140755640 G A PCDHGA6 Missense_Mutation p.V664M 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.627) TCGA-GR-A4D5-01 6 11306336 11306337 AA - NEDD9 5'UTR 0.20 TCGA-GR-A4D5-01 6 138200148 138200148 A G TNFAIP3 Silent p.Q522Q 0.07 TCGA-GR-A4D5-01 6 26124712 26124712 G A HIST1H2AC Silent p.L84L 0.05 TCGA-GR-A4D5-01 6 32905038 32905038 G A HLA-DMB Missense_Mutation p.S178F 0.06 deleterious(0.02) probably_damaging(0.993) TCGA-GR-A4D5-01 6 52344014 52344014 C G EFHC1 Silent p.G486G 0.08 TCGA-GR-A4D5-01 6 73935097 73935097 G A KHDC1L Missense_Mutation p.P12L 0.07 tolerated(0.12) benign(0.006) TCGA-GR-A4D5-01 6 75969072 75969072 G A TMEM30A Nonsense_Mutation p.R226* 0.06 TCGA-GR-A4D5-01 7 128477754 128477754 C T FLNC Missense_Mutation p.A305V 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-GR-A4D5-01 7 137206621 137206621 G A DGKI Nonsense_Mutation p.R747* 0.05 TCGA-GR-A4D5-01 7 138967921 138967921 A G UBN2 Missense_Mutation p.D757G 0.05 deleterious(0) probably_damaging(0.992) TCGA-GR-A4D5-01 7 2770892 2770892 C T GNA12 Missense_Mutation p.E357K 0.05 deleterious(0.04) probably_damaging(0.939) TCGA-GR-A4D5-01 8 113267635 113267635 C A CSMD3 Missense_Mutation p.G3295V 0.06 deleterious(0.02) possibly_damaging(0.643) TCGA-GR-A4D5-01 9 118989774 118989774 G A PAPPA Missense_Mutation p.A726T 0.14 deleterious(0) possibly_damaging(0.499) TCGA-GR-A4D5-01 9 133285964 133285964 G A HMCN2 Missense_Mutation p.D6N 0.08 deleterious(0.01) probably_damaging(1) TCGA-GR-A4D5-01 9 2081900 2081900 G A SMARCA2 Missense_Mutation p.M751I 0.12 benign(0) TCGA-GR-A4D5-01 9 35404014 35404014 C T UNC13B Missense_Mutation p.T1587M 0.09 deleterious(0.02) benign(0.028) TCGA-GR-A4D5-01 9 35724043 35724043 C T TLN1 Missense_Mutation p.V230I 0.11 tolerated(0.06) benign(0.206) TCGA-GR-A4D5-01 9 73461394 73461394 G A TRPM3 Silent p.N192N 0.11 TCGA-GR-A4D5-01 X 112035109 112035109 C T AMOT Missense_Mutation p.R626H 0.09 unknown(0) TCGA-GR-A4D5-01 X 12994481 12994481 G C TMSB4X Splice_Site p.X34_splice 0.13 TCGA-GR-A4D5-01 X 64951012 64951012 C T MSN Missense_Mutation p.R171W 0.09 deleterious(0.01) probably_damaging(1) TCGA-GR-A4D5-01 X 72347894 72347894 C T NAP1L6 5'UTR 0.03 TCGA-GR-A4D6-01 10 106959799 106959799 G T SORCS3 Silent p.V684V 0.12 TCGA-GR-A4D6-01 10 20436808 20436808 C T PLXDC2 Nonsense_Mutation p.R254* 0.13 TCGA-GR-A4D6-01 10 75532077 75532077 G A AC022400.2 Missense_Mutation p.A101V 0.18 unknown(0) TCGA-GR-A4D6-01 11 47435959 47435959 G T SLC39A13 Intron 0.16 TCGA-GR-A4D6-01 11 59225155 59225155 C T OR4D6 Missense_Mutation p.T241M 0.16 deleterious(0) probably_damaging(0.99) TCGA-GR-A4D6-01 11 70338439 70338439 C T SHANK2 Splice_Site p.X814_splice 0.25 TCGA-GR-A4D6-01 11 95656904 95656904 C T MTMR2 Intron 0.25 TCGA-GR-A4D6-01 12 101437399 101437399 T G ANO4 Missense_Mutation p.C378G 0.21 deleterious(0) probably_damaging(0.999) TCGA-GR-A4D6-01 12 121891060 121891060 G A KDM2B Missense_Mutation p.R608W 0.26 deleterious(0) probably_damaging(0.999) TCGA-GR-A4D6-01 12 31585991 31585991 A T DENND5B Intron 0.33 TCGA-GR-A4D6-01 12 31842000 31842000 A G AMN1 Missense_Mutation p.V215A 0.27 deleterious(0.03) benign(0.016) TCGA-GR-A4D6-01 12 6085324 6085324 G A VWF Missense_Mutation p.R2464C 0.21 deleterious(0) probably_damaging(0.965) TCGA-GR-A4D6-01 12 85677550 85677550 C A ALX1 Missense_Mutation p.Q143K 0.16 deleterious(0) possibly_damaging(0.843) TCGA-GR-A4D6-01 14 106830003 106830003 G C IGHV4-34 Missense_Mutation p.L15V 0.15 deleterious(0.03) benign(0.142) TCGA-GR-A4D6-01 14 29238707 29238707 C A FOXG1 3'UTR 0.05 TCGA-GR-A4D6-01 14 42356300 42356300 A C LRFN5 Missense_Mutation p.N158H 0.25 deleterious(0) probably_damaging(0.999) TCGA-GR-A4D6-01 14 47351277 47351277 C T MDGA2 Missense_Mutation p.D796N 0.27 deleterious(0.02) benign(0.084) TCGA-GR-A4D6-01 14 73029142 73029142 C A RGS6 Silent p.G480G 0.19 TCGA-GR-A4D6-01 15 74032235 74032235 G A C15orf59 3'UTR 0.33 TCGA-GR-A4D6-01 16 1484773 1484773 G A CCDC154 Silent p.S598S 0.07 TCGA-GR-A4D6-01 16 20554575 20554575 C T ACSM2B Missense_Mutation p.D431N 0.24 deleterious(0.02) benign(0.014) TCGA-GR-A4D6-01 16 30770512 30770512 T C C16orf93 Silent p.P238P 0.22 TCGA-GR-A4D6-01 16 79633565 79633565 C T MAF Missense_Mutation p.G79S 0.26 tolerated(0.37) unknown(0) TCGA-GR-A4D6-01 16 89347228 89347228 G A ANKRD11 Missense_Mutation p.P1908S 0.28 possibly_damaging(0.576) TCGA-GR-A4D6-01 17 35913676 35913676 C T SYNRG Missense_Mutation p.E717K 0.10 tolerated_low_confidence(0.29) probably_damaging(0.996) TCGA-GR-A4D6-01 18 44229211 44229211 G A LOXHD1 Missense_Mutation p.T51M 0.14 deleterious(0) probably_damaging(0.968) TCGA-GR-A4D6-01 19 1037764 1037764 C G CNN2 Silent p.G265G 0.24 TCGA-GR-A4D6-01 19 12902785 12902785 G A JUNB Missense_Mutation p.S67N 0.37 tolerated(0.59) benign(0.003) TCGA-GR-A4D6-01 19 7174667 7174667 C T INSR Silent p.S350S 0.16 TCGA-GR-A4D6-01 1 157670256 157670256 C T FCRL3 Silent p.L8L 0.25 TCGA-GR-A4D6-01 1 158301232 158301232 T A CD1B 5'UTR 0.20 TCGA-GR-A4D6-01 1 176671860 176671860 G C PAPPA2 Silent p.G1118G 0.14 TCGA-GR-A4D6-01 1 185834870 185834870 T G HMCN1 Intron 0.22 TCGA-GR-A4D6-01 1 203668728 203668728 C T ATP2B4 Missense_Mutation p.R178W 0.19 deleterious(0) probably_damaging(0.997) TCGA-GR-A4D6-01 1 212532087 212532087 T G PPP2R5A Missense_Mutation p.L429R 0.14 deleterious(0) probably_damaging(0.921) TCGA-GR-A4D6-01 1 46099295 46099295 T C GPBP1L1 Missense_Mutation p.I304V 0.06 tolerated(0.83) benign(0.003) TCGA-GR-A4D6-01 1 53544260 53544260 C T PODN Missense_Mutation p.R408W 0.29 deleterious(0) probably_damaging(0.964) TCGA-GR-A4D6-01 1 6214838 6214838 C T CHD5 Silent p.A209A 0.27 TCGA-GR-A4D6-01 1 86249233 86249233 T G COL24A1 Missense_Mutation p.E1410D 0.23 tolerated(0.19) benign(0.004) TCGA-GR-A4D6-01 20 60509188 60509188 C T CDH4 Silent p.R818R 0.18 TCGA-GR-A4D6-01 20 61870941 61870941 G A BIRC7 Missense_Mutation p.R294H 0.33 deleterious(0.03) possibly_damaging(0.854) TCGA-GR-A4D6-01 21 45825049 45825049 G A TRPM2 Missense_Mutation p.G855R 0.24 deleterious(0.01) possibly_damaging(0.672) TCGA-GR-A4D6-01 22 23230019 23230019 A C IGLL5 5'UTR 0.38 TCGA-GR-A4D6-01 22 26242205 26242205 C T MYO18B Silent p.A1169A 0.26 TCGA-GR-A4D6-01 22 41489081 41489081 G C EP300 Missense_Mutation p.A25P 0.21 unknown(0) TCGA-GR-A4D6-01 22 41572795 41572795 A G EP300 Missense_Mutation p.T1694A 0.26 benign(0.246) TCGA-GR-A4D6-01 2 169417787 169417787 G A CERS6 Missense_Mutation p.R121H 0.29 deleterious(0) probably_damaging(0.98) TCGA-GR-A4D6-01 2 179605902 179605902 A T TTN Missense_Mutation p.S4020T 0.41 TCGA-GR-A4D6-01 2 182786933 182786933 C T SSFA2 Missense_Mutation p.P1157S 0.25 deleterious(0) probably_damaging(0.999) TCGA-GR-A4D6-01 2 197784836 197784836 G A PGAP1 Silent p.P62P 0.24 TCGA-GR-A4D6-01 2 218924156 218924156 T A CXCR2P1 RNA 0.22 TCGA-GR-A4D6-01 3 118647420 118647420 G A IGSF11 Silent p.C120C 0.18 TCGA-GR-A4D6-01 3 122002948 122002948 G A CASR Missense_Mutation p.R726H 0.22 tolerated(0.14) probably_damaging(0.999) TCGA-GR-A4D6-01 3 122003487 122003487 C T CASR Missense_Mutation p.R906C 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GR-A4D6-01 3 171455820 171455820 G A PLD1 Missense_Mutation p.R8W 0.16 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-GR-A4D6-01 3 183212058 183212058 T C KLHL6 Missense_Mutation p.T387A 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-GR-A4D6-01 3 184429559 184429559 C T MAGEF1 Silent p.G17G 0.14 TCGA-GR-A4D6-01 3 20153178 20153178 G T KAT2B Silent p.S314S 0.04 TCGA-GR-A4D6-01 3 25611289 25611289 G A RARB Silent p.S163S 0.23 TCGA-GR-A4D6-01 3 48614179 48614179 C T COL7A1 Missense_Mutation p.R1877H 0.13 unknown(0) TCGA-GR-A4D6-01 3 78795978 78795978 C A ROBO1 Missense_Mutation p.C191F 0.14 deleterious(0) probably_damaging(0.999) TCGA-GR-A4D6-01 4 126369791 126369791 A T FAT4 Silent p.V2540V 0.22 TCGA-GR-A4D6-01 5 140475135 140475135 C T PCDHB2 Missense_Mutation p.P254L 0.36 tolerated_low_confidence(0.27) benign(0.027) TCGA-GR-A4D6-01 5 26988470 26988470 C A CDH9 5'UTR 0.11 TCGA-GR-A4D6-01 5 80369213 80369213 G A RASGRF2 Missense_Mutation p.A277T 0.07 deleterious(0) possibly_damaging(0.848) TCGA-GR-A4D6-01 6 128505735 128505735 C T PTPRK Missense_Mutation p.G335E 0.08 deleterious(0) probably_damaging(0.998) TCGA-GR-A4D6-01 6 138751531 138751531 T C NHSL1 Silent p.A1321A 0.28 TCGA-GR-A4D6-01 6 17837222 17837222 G A KIF13A Nonsense_Mutation p.R348* 0.25 TCGA-GR-A4D6-01 6 26216764 26216764 C T HIST1H2BG Silent p.E36E 0.21 TCGA-GR-A4D6-01 6 26216827 26216827 G A HIST1H2BG Silent p.S15S 0.21 TCGA-GR-A4D6-01 6 26234674 26234674 G C HIST1H1D Missense_Mutation p.A163G 0.21 tolerated(0.31) unknown(0) TCGA-GR-A4D6-01 6 43638604 43638604 A C RSPH9 Silent p.L267L 0.16 TCGA-GR-A4D6-01 6 44227895 44227895 A G NFKBIE Missense_Mutation p.L441P 0.37 deleterious(0) probably_damaging(1) TCGA-GR-A4D6-01 6 93956664 93956664 G T EPHA7 Missense_Mutation p.P858T 0.25 deleterious(0) probably_damaging(1) TCGA-GR-A4D6-01 6 99283508 99283508 C T POU3F2 Silent p.G253G 0.21 TCGA-GR-A4D6-01 7 151135158 151135158 T G CRYGN Missense_Mutation p.E65A 0.17 deleterious(0) probably_damaging(1) TCGA-GR-A4D6-01 7 44180308 44180308 C T MYL7 Intron 0.15 TCGA-GR-A4D6-01 8 114290902 114290902 T G CSMD3 Missense_Mutation p.T145P 0.19 tolerated(0.11) benign(0.004) TCGA-GR-A4D6-01 9 123937296 123937296 G A CNTRL Missense_Mutation p.A2250T 0.25 possibly_damaging(0.858) TCGA-GR-A4D6-01 X 123657422 123657422 G A TENM1 Missense_Mutation p.S942F 0.33 deleterious(0) possibly_damaging(0.733) TCGA-GR-A4D6-01 X 153217602 153217602 G A HCFC1 Silent p.G1650G 0.32 TCGA-GR-A4D6-01 X 77913210 77913210 G A ZCCHC5 Silent p.F236F 0.35 TCGA-GR-A4D6-01 X 92966191 92966191 T A FAM133A 3'UTR 0.30 TCGA-GR-A4D9-01 11 111249884 111249884 T A POU2AF1 Intron 0.34 TCGA-GR-A4D9-01 11 118211113 118211113 G A CD3D Missense_Mutation p.S84F 0.24 tolerated(0.13) benign(0.008) TCGA-GR-A4D9-01 11 123676690 123676690 G T OR6M1 Missense_Mutation p.A123D 0.38 deleterious(0) probably_damaging(0.997) TCGA-GR-A4D9-01 11 61675610 61675610 G A RAB3IL1 Silent p.D60D 0.25 TCGA-GR-A4D9-01 11 65402522 65402522 C T PCNXL3 Silent p.V1628V 0.50 TCGA-GR-A4D9-01 11 88911368 88911368 G A TYR Missense_Mutation p.V83I 0.40 tolerated(0.41) benign(0.022) TCGA-GR-A4D9-01 12 109889615 109889615 C G KCTD10 Missense_Mutation p.E243Q 0.33 deleterious(0.02) benign(0.222) TCGA-GR-A4D9-01 12 122247634 122247634 C T SETD1B Silent p.C261C 0.28 TCGA-GR-A4D9-01 12 49432447 49432447 G A KMT2D Nonsense_Mutation p.Q2898* 0.29 TCGA-GR-A4D9-01 12 54795600 54795600 C T ITGA5 Missense_Mutation p.D756N 0.38 tolerated(0.16) probably_damaging(1) TCGA-GR-A4D9-01 12 93772048 93772048 C A NUDT4 5'UTR 0.18 TCGA-GR-A4D9-01 13 51952381 51952381 C T INTS6 Silent p.L532L 0.41 TCGA-GR-A4D9-01 14 106330024 106330024 C T IGHJ5 Silent p.%3D 0.17 TCGA-GR-A4D9-01 14 106815806 106815806 G C IGHV3-33 Missense_Mutation p.I89M 0.55 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-GR-A4D9-01 14 106815924 106815924 C G IGHV3-33 Missense_Mutation p.S50T 0.16 tolerated_low_confidence(0.12) benign(0.009) TCGA-GR-A4D9-01 14 106816007 106816007 C T IGHV3-33 Silent p.Q22Q 0.43 TCGA-GR-A4D9-01 14 107170052 107170052 G A IGHV1-69 Missense_Mutation p.A77V 0.19 deleterious(0.01) benign(0.005) TCGA-GR-A4D9-01 14 107170060 107170060 A T IGHV1-69 Missense_Mutation p.F74L 0.20 tolerated(0.36) benign(0) TCGA-GR-A4D9-01 14 26949278 26949278 C T NOVA1 Missense_Mutation p.E118K 0.06 deleterious(0.01) unknown(0) TCGA-GR-A4D9-01 14 59797397 59797397 G A DAAM1 Silent p.E517E 0.30 TCGA-GR-A4D9-01 15 45007689 45007690 TA - B2M Frame_Shift_Del p.Y46Cfs*10 0.41 TCGA-GR-A4D9-01 15 63132686 63132686 C T TLN2 Silent p.I2502I 0.67 TCGA-GR-A4D9-01 15 78526777 78526777 C T ACSBG1 Missense_Mutation p.E23K 0.19 tolerated_low_confidence(0.09) benign(0.036) TCGA-GR-A4D9-01 16 11001270 11001271 TA - CIITA Frame_Shift_Del p.Y641Cfs*107 0.16 TCGA-GR-A4D9-01 16 22826243 22826243 C T HS3ST2 Silent p.S104S 0.31 TCGA-GR-A4D9-01 16 31473872 31473872 G A ARMC5 Missense_Mutation p.R335Q 0.39 tolerated(0.14) benign(0.18) TCGA-GR-A4D9-01 16 3789597 3789597 C A CREBBP Missense_Mutation p.C1421F 0.59 unknown(0) TCGA-GR-A4D9-01 16 49672444 49672444 C T ZNF423 Missense_Mutation p.D207N 0.32 deleterious(0.01) probably_damaging(1) TCGA-GR-A4D9-01 16 89352567 89352567 C T ANKRD11 Missense_Mutation p.G258R 0.37 probably_damaging(0.999) TCGA-GR-A4D9-01 16 89763723 89763723 G T SPATA2L 3'UTR 0.23 TCGA-GR-A4D9-01 17 27448927 27448927 C T MYO18A Missense_Mutation p.R379H 0.33 deleterious(0.02) possibly_damaging(0.635) TCGA-GR-A4D9-01 17 60821880 60821880 G T MARCH10 Missense_Mutation p.A131E 0.27 tolerated(0.11) benign(0.015) TCGA-GR-A4D9-01 17 74003681 74003681 C T EVPL Missense_Mutation p.V1869M 0.29 deleterious(0) possibly_damaging(0.458) TCGA-GR-A4D9-01 17 74080183 74080183 T C EXOC7 Missense_Mutation p.Q670R 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-GR-A4D9-01 18 21394444 21394444 A C LAMA3 Missense_Mutation p.K622N 0.36 benign(0.222) TCGA-GR-A4D9-01 18 3814275 3814275 T A DLGAP1 Splice_Site p.X320_splice 0.24 TCGA-GR-A4D9-01 19 13414595 13414595 G A CACNA1A Missense_Mutation p.T697M 0.30 probably_damaging(0.994) TCGA-GR-A4D9-01 19 14951929 14951929 G T OR7A10 Missense_Mutation p.T254K 0.33 deleterious_low_confidence(0) benign(0.318) TCGA-GR-A4D9-01 19 21948514 21948514 C A ZNF100 Silent p.V26V 0.21 TCGA-GR-A4D9-01 19 42595648 42595648 G T POU2F2 3'UTR 0.30 TCGA-GR-A4D9-01 19 53761881 53761881 A C VN1R2 Missense_Mutation p.T85P 0.31 deleterious_low_confidence(0.01) benign(0) TCGA-GR-A4D9-01 19 56249530 56249530 C A NLRP9 Missense_Mutation p.V71L 0.27 tolerated(0.12) benign(0.252) TCGA-GR-A4D9-01 19 56552307 56552307 A C NLRP5 Missense_Mutation p.T936P 0.11 deleterious(0.01) possibly_damaging(0.863) TCGA-GR-A4D9-01 19 58232921 58232921 T G ZNF671 Missense_Mutation p.H178P 0.27 deleterious(0.03) benign(0.005) TCGA-GR-A4D9-01 19 9453401 9453401 T A ZNF559 Missense_Mutation p.I425N 0.31 tolerated(0.51) benign(0.043) TCGA-GR-A4D9-01 1 110169025 110169025 C T AMPD2 Silent p.T223T 0.32 TCGA-GR-A4D9-01 1 117491909 117491909 C T PTGFRN Missense_Mutation p.R310W 0.33 deleterious(0.02) probably_damaging(0.959) TCGA-GR-A4D9-01 1 152278347 152278347 G C FLG Missense_Mutation p.D3005E 0.17 benign(0.003) TCGA-GR-A4D9-01 1 155920171 155920171 G A ARHGEF2 Missense_Mutation p.R936W 0.23 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-GR-A4D9-01 1 163325471 163325471 C A NUF2 3'UTR 0.16 TCGA-GR-A4D9-01 1 180240607 180240607 C T LHX4 Missense_Mutation p.P182S 0.58 deleterious(0) probably_damaging(0.998) TCGA-GR-A4D9-01 1 216420482 216420482 G T USH2A Missense_Mutation p.H752N 0.21 benign(0.043) TCGA-GR-A4D9-01 1 27102083 27102083 G A ARID1A Nonsense_Mutation p.W1670* 0.35 TCGA-GR-A4D9-01 1 3662551 3662551 G A TP73-AS1 RNA 0.33 TCGA-GR-A4D9-01 1 78163140 78163140 A T USP33 Silent p.I897I 0.37 TCGA-GR-A4D9-01 1 85733491 85733491 A T BCL10 Nonsense_Mutation p.L174* 0.46 TCGA-GR-A4D9-01 1 85733552 85733552 A G BCL10 Missense_Mutation p.Y154H 0.44 tolerated(0.17) benign(0.305) TCGA-GR-A4D9-01 1 85736460 85736460 T G BCL10 Missense_Mutation p.K63Q 0.47 deleterious(0.03) possibly_damaging(0.794) TCGA-GR-A4D9-01 20 25264786 25264786 T C PYGB Missense_Mutation p.V556A 0.27 deleterious(0.01) possibly_damaging(0.643) TCGA-GR-A4D9-01 20 58587641 58587641 C T CDH26 Silent p.S785S 0.32 TCGA-GR-A4D9-01 22 22868665 22868665 T G ZNF280A Missense_Mutation p.K430N 0.36 deleterious(0.04) benign(0.272) TCGA-GR-A4D9-01 22 23063344 23063344 T C IGLV3-19 Silent p.S17S 0.21 TCGA-GR-A4D9-01 22 23063427 23063427 G A IGLV3-19 Missense_Mutation p.S45N 0.29 tolerated(0.98) benign(0.004) TCGA-GR-A4D9-01 22 23063449 23063449 C T IGLV3-19 Silent p.S52S 0.05 TCGA-GR-A4D9-01 22 23063590 23063590 A G IGLV3-19 Silent p.E99E 0.22 TCGA-GR-A4D9-01 22 23063617 23063617 C G IGLV3-19 Silent p.S108S 0.22 TCGA-GR-A4D9-01 22 45937241 45937241 C T FBLN1 Missense_Mutation p.T352M 0.34 deleterious(0.01) probably_damaging(0.981) TCGA-GR-A4D9-01 2 153192163 153192163 G C FMNL2 Missense_Mutation p.A16P 0.07 benign(0.018) TCGA-GR-A4D9-01 2 179604859 179604859 C A TTN Missense_Mutation p.K4367N 0.26 TCGA-GR-A4D9-01 2 186670945 186670945 C A FSIP2 Missense_Mutation p.L5727I 0.33 benign(0.005) TCGA-GR-A4D9-01 2 200173610 200173610 A G SATB2 Missense_Mutation p.L538P 0.39 deleterious(0) probably_damaging(1) TCGA-GR-A4D9-01 2 212248599 212248599 T G ERBB4 Missense_Mutation p.K1223T 0.30 tolerated(0.47) benign(0.027) TCGA-GR-A4D9-01 2 242097275 242097275 G A PPP1R7 Missense_Mutation p.E79K 0.36 tolerated(0.12) benign(0.41) TCGA-GR-A4D9-01 2 5835287 5835287 A G SOX11 3'UTR 0.26 TCGA-GR-A4D9-01 3 101578255 101578258 AGTT - NFKBIZ 3'UTR 0.34 TCGA-GR-A4D9-01 3 155218568 155218568 G A PLCH1 Missense_Mutation p.R562W 0.10 deleterious(0.03) possibly_damaging(0.762) TCGA-GR-A4D9-01 3 15643124 15643124 G T BTD 5'Flank 0.36 TCGA-GR-A4D9-01 3 183209942 183209942 C T KLHL6 Missense_Mutation p.E547K 0.35 tolerated(1) probably_damaging(0.977) TCGA-GR-A4D9-01 3 33552202 33552202 C T CLASP2 Missense_Mutation p.E1397K 0.29 deleterious(0.01) benign(0.297) TCGA-GR-A4D9-01 3 37476379 37476379 C T C3orf35 Missense_Mutation p.P91S 0.36 tolerated_low_confidence(0.26) possibly_damaging(0.803) TCGA-GR-A4D9-01 3 62647994 62647994 C A CADPS Missense_Mutation p.A322S 0.50 tolerated(0.3) benign(0.364) TCGA-GR-A4D9-01 3 73657749 73657749 C A PDZRN3 Silent p.V270V 0.33 TCGA-GR-A4D9-01 4 949650 949650 G A TMEM175 Missense_Mutation p.V272M 0.30 deleterious(0) probably_damaging(0.999) TCGA-GR-A4D9-01 5 140711241 140711241 A C PCDHGA1 Missense_Mutation p.K330N 0.13 deleterious_low_confidence(0.01) benign(0.158) TCGA-GR-A4D9-01 5 39311417 39311417 G A C9 Silent p.R311R 0.48 TCGA-GR-A4D9-01 5 5461621 5461621 A - KIAA0947 Frame_Shift_Del p.Y725Lfs*4 0.21 TCGA-GR-A4D9-01 5 9052036 9052036 C T SEMA5A Missense_Mutation p.G932R 0.32 deleterious(0) probably_damaging(1) TCGA-GR-A4D9-01 6 117086652 117086652 G A FAM162B Missense_Mutation p.R30W 0.55 tolerated(0.12) benign(0.003) TCGA-GR-A4D9-01 6 17764996 17764996 C T KIF13A Missense_Mutation p.R1588H 0.32 tolerated_low_confidence(0.07) probably_damaging(0.932) TCGA-GR-A4D9-01 7 149509062 149509062 G A SSPO RNA 0.38 TCGA-GR-A4D9-01 7 57187431 57187431 T C ZNF479 3'UTR 0.05 TCGA-GR-A4D9-01 7 92887682 92887682 T C CCDC132 Missense_Mutation p.V185A 0.22 tolerated(0.56) benign(0.137) TCGA-GR-A4D9-01 8 104831794 104831794 T G RIMS2 Intron 0.26 TCGA-GR-A4D9-01 8 126069044 126069044 G A KIAA0196 Missense_Mutation p.P631S 0.32 deleterious(0) probably_damaging(1) TCGA-GR-A4D9-01 8 42176069 42176069 G T IKBKB Splice_Site p.X414_splice 0.29 TCGA-GR-A4D9-01 9 117086061 117086061 T A ORM1 Missense_Mutation p.I78N 0.33 deleterious(0) probably_damaging(0.996) TCGA-GR-A4D9-01 9 139981546 139981546 C T MAN1B1 Missense_Mutation p.A32V 0.29 deleterious_low_confidence(0.01) benign(0.015) TCGA-GR-A4D9-01 9 141070672 141070672 C T TUBBP5 RNA 0.52 TCGA-GR-A4D9-01 X 102004884 102004884 G T BHLHB9 Missense_Mutation p.D321Y 0.25 deleterious(0.01) possibly_damaging(0.882) TCGA-GR-A4D9-01 X 140271296 140271296 G T LDOC1 5'UTR 0.22 TCGA-GR-A4D9-01 X 144905286 144905286 G A SLITRK2 Missense_Mutation p.S448N 0.31 tolerated(0.24) possibly_damaging(0.534) TCGA-GR-A4D9-01 X 148048474 148048474 T A AFF2 Missense_Mutation p.I1023N 0.13 tolerated(0.49) probably_damaging(0.998) TCGA-GR-A4D9-01 X 153043045 153043045 C A PLXNB3 Silent p.I1744I 0.23 TCGA-GR-A4D9-01 X 15841176 15841176 A G ZRSR2 Silent p.S420S 0.35 TCGA-GR-A4D9-01 X 34675028 34675028 C G TMEM47 Missense_Mutation p.S40T 0.33 deleterious(0.04) benign(0.003) TCGA-GR-A4D9-01 X 50378187 50378187 G A SHROOM4 Missense_Mutation p.R296C 0.34 tolerated(0.21) benign(0.003) TCGA-GR-A4D9-01 X 53280102 53280102 C T IQSEC2 Silent p.P552P 0.07 TCGA-GR-A4D9-01 X 70516496 70516496 C A NONO Missense_Mutation p.N244K 0.28 tolerated(0.07) benign(0.262) TCGA-GS-A9TQ-01 10 100995457 100995457 G T HPSE2 Missense_Mutation p.L35I 0.16 tolerated(0.3) benign(0.036) TCGA-GS-A9TQ-01 10 102296186 102296186 G A HIF1AN Missense_Mutation p.D66N 0.12 tolerated(0.25) possibly_damaging(0.779) TCGA-GS-A9TQ-01 10 105184917 105184917 C G PDCD11 Silent p.L980L 0.18 TCGA-GS-A9TQ-01 10 121556996 121556996 G A INPP5F Missense_Mutation p.V298M 0.15 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TQ-01 10 128193085 128193085 G A C10orf90 Silent p.D228D 0.47 TCGA-GS-A9TQ-01 10 134210751 134210751 C T PWWP2B Silent p.C7C 0.09 TCGA-GS-A9TQ-01 10 24834132 24834132 C T KIAA1217 Intron 0.20 TCGA-GS-A9TQ-01 10 25138727 25138727 G A PRTFDC1 3'UTR 0.15 TCGA-GS-A9TQ-01 10 32307310 32307310 T C KIF5B Silent p.K791K 0.22 TCGA-GS-A9TQ-01 10 48370796 48370796 G A ZNF488 Silent p.P88P 0.14 TCGA-GS-A9TQ-01 10 64966940 64966940 T C JMJD1C Missense_Mutation p.S1497G 0.16 tolerated(0.09) benign(0.003) TCGA-GS-A9TQ-01 10 71025457 71025457 C T HKDC1 Missense_Mutation p.A830V 0.25 deleterious(0) probably_damaging(1) TCGA-GS-A9TQ-01 10 76154072 76154072 G A ADK Splice_Site p.X149_splice 0.09 TCGA-GS-A9TQ-01 10 95335856 95335856 G T FFAR4 Silent p.S192S 0.12 TCGA-GS-A9TQ-01 10 98760815 98760815 G A SLIT1 3'UTR 0.12 TCGA-GS-A9TQ-01 11 18042375 18042375 C A TPH1 3'UTR 0.29 TCGA-GS-A9TQ-01 11 22239829 22239829 T G ANO5 Missense_Mutation p.L59R 0.34 deleterious(0.02) possibly_damaging(0.836) TCGA-GS-A9TQ-01 11 5173157 5173157 G A OR52A1 Missense_Mutation p.T148I 0.14 tolerated(0.24) benign(0.002) TCGA-GS-A9TQ-01 11 56184896 56184896 G T OR5R1 Missense_Mutation p.D271E 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-GS-A9TQ-01 11 60671271 60671271 G A PRPF19 Missense_Mutation p.R28W 0.15 deleterious(0) probably_damaging(1) TCGA-GS-A9TQ-01 11 64120582 64120582 G A CCDC88B Missense_Mutation p.R1186H 0.35 tolerated(0.71) probably_damaging(0.999) TCGA-GS-A9TQ-01 11 64889115 64889115 G C FAU Missense_Mutation p.A26G 0.18 tolerated(0.09) possibly_damaging(0.571) TCGA-GS-A9TQ-01 11 69934055 69934055 G A ANO1 Silent p.P102P 0.08 TCGA-GS-A9TQ-01 11 70009435 70009435 C T ANO1 Nonsense_Mutation p.R647* 0.16 TCGA-GS-A9TQ-01 11 71954832 71954832 C T PHOX2A Missense_Mutation p.V73M 0.14 deleterious(0.03) benign(0.265) TCGA-GS-A9TQ-01 11 78387322 78387322 C T TENM4 Missense_Mutation p.V1791I 0.25 tolerated(0.4) benign(0.001) TCGA-GS-A9TQ-01 12 113312924 113312924 C T RPH3A Missense_Mutation p.P278S 0.27 tolerated(0.16) benign(0.219) TCGA-GS-A9TQ-01 12 120436503 120436503 C T CCDC64 Missense_Mutation p.S203L 0.09 deleterious(0.01) probably_damaging(0.981) TCGA-GS-A9TQ-01 12 121970824 121970824 A G KDM2B Missense_Mutation p.L273P 0.09 deleterious(0) probably_damaging(0.918) TCGA-GS-A9TQ-01 12 122460029 122460029 G C BCL7A Missense_Mutation p.R11T 0.55 deleterious(0) possibly_damaging(0.882) TCGA-GS-A9TQ-01 12 31585991 31585991 A T DENND5B Intron 0.15 TCGA-GS-A9TQ-01 12 49420424 49420424 A G KMT2D Missense_Mutation p.C5109R 0.23 unknown(0) TCGA-GS-A9TQ-01 12 49428192 49428192 C T KMT2D Splice_Site p.X3503_splice 0.62 TCGA-GS-A9TQ-01 12 57435233 57435233 C T MYO1A Missense_Mutation p.G383S 0.15 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TQ-01 12 6030389 6030389 G A ANO2 Silent p.G113G 0.11 TCGA-GS-A9TQ-01 12 6436578 6436579 AA - PLEKHG6 Frame_Shift_Del p.R611Sfs*58 0.12 TCGA-GS-A9TQ-01 13 111274587 111274587 G A CARKD Missense_Mutation p.R42H 0.21 tolerated(1) benign(0.006) TCGA-GS-A9TQ-01 13 51936229 51936229 T G SERPINE3 3'UTR 0.14 TCGA-GS-A9TQ-01 13 51936234 51936234 T C SERPINE3 3'UTR 0.13 TCGA-GS-A9TQ-01 13 93879577 93879577 G A GPC6 5'UTR 0.23 TCGA-GS-A9TQ-01 14 101350272 101350272 C T RTL1 Missense_Mutation p.R285H 0.22 deleterious(0) probably_damaging(1) TCGA-GS-A9TQ-01 14 106204116 106204116 T C IGHG1 Missense_Mutation p.I395V 0.13 deleterious(0.01) benign(0.13) TCGA-GS-A9TQ-01 14 106204174 106204174 C T IGHG1 Nonsense_Mutation p.W375* 0.14 TCGA-GS-A9TQ-01 14 106208042 106208042 C T IGHG1 Missense_Mutation p.G254D 0.26 tolerated(0.49) benign(0.104) TCGA-GS-A9TQ-01 14 106733157 106733157 T C IGHV1-24 Missense_Mutation p.Y113C 0.23 deleterious(0) possibly_damaging(0.705) TCGA-GS-A9TQ-01 14 106733192 106733192 C T IGHV1-24 Silent p.E101E 0.24 TCGA-GS-A9TQ-01 14 106733327 106733327 C G IGHV1-24 Silent p.V56V 0.17 TCGA-GS-A9TQ-01 14 106733365 106733365 A G IGHV1-24 Missense_Mutation p.S44P 0.20 deleterious(0) possibly_damaging(0.705) TCGA-GS-A9TQ-01 14 106733428 106733428 G A IGHV1-24 Silent p.L23L 0.14 TCGA-GS-A9TQ-01 14 107169946 107169946 C T IGHV1-69 Silent p.V112V 0.11 TCGA-GS-A9TQ-01 14 107178861 107178861 T A IGHV2-70 Missense_Mutation p.M106L 0.18 tolerated(0.4) benign(0.008) TCGA-GS-A9TQ-01 14 107178878 107178878 A T IGHV2-70 Missense_Mutation p.V100D 0.18 tolerated(0.19) benign(0.012) TCGA-GS-A9TQ-01 14 107178886 107178886 G C IGHV2-70 Missense_Mutation p.N97K 0.17 deleterious(0.03) benign(0.047) TCGA-GS-A9TQ-01 14 107178890 107178890 T A IGHV2-70 Missense_Mutation p.K96I 0.11 deleterious(0) possibly_damaging(0.674) TCGA-GS-A9TQ-01 14 107178942 107178942 A G IGHV2-70 Missense_Mutation p.Y79H 0.17 tolerated(0.22) benign(0.007) TCGA-GS-A9TQ-01 14 107178950 107178950 T G IGHV2-70 Missense_Mutation p.D76A 0.17 deleterious(0.01) possibly_damaging(0.689) TCGA-GS-A9TQ-01 14 107178959 107178959 T G IGHV2-70 Missense_Mutation p.D73A 0.17 tolerated(0.43) benign(0.027) TCGA-GS-A9TQ-01 14 107178968 107178968 G A IGHV2-70 Missense_Mutation p.A70V 0.14 deleterious(0.01) benign(0.025) TCGA-GS-A9TQ-01 14 107178991 107178991 T C IGHV2-70 Silent p.P62P 0.22 TCGA-GS-A9TQ-01 14 107179009 107179009 G C IGHV2-70 Missense_Mutation p.S56R 0.16 tolerated(0.1) possibly_damaging(0.469) TCGA-GS-A9TQ-01 14 107179025 107179025 C G IGHV2-70 Missense_Mutation p.S51T 0.32 tolerated(0.11) benign(0) TCGA-GS-A9TQ-01 14 107179053 107179053 T A IGHV2-70 Missense_Mutation p.T42S 0.16 tolerated(0.53) benign(0.058) TCGA-GS-A9TQ-01 14 107179101 107179101 A G IGHV2-70 Missense_Mutation p.S26P 0.16 deleterious(0.01) probably_damaging(0.938) TCGA-GS-A9TQ-01 14 23569481 23569481 A C C14orf119 3'UTR 0.29 TCGA-GS-A9TQ-01 14 30046638 30046638 G T PRKD1 Silent p.R849R 0.26 TCGA-GS-A9TQ-01 14 74411424 74411424 C T FAM161B Missense_Mutation p.R243H 0.21 deleterious(0) probably_damaging(1) TCGA-GS-A9TQ-01 14 74449761 74449761 C T ENTPD5 Missense_Mutation p.R134H 0.21 deleterious(0) probably_damaging(1) TCGA-GS-A9TQ-01 14 93154450 93154450 C T RIN3 Silent p.D937D 0.17 TCGA-GS-A9TQ-01 15 22070596 22070596 A G POTEB Missense_Mutation p.L320P 0.31 deleterious(0) possibly_damaging(0.883) TCGA-GS-A9TQ-01 15 25222971 25222971 C T SNRPN Missense_Mutation p.A156V 0.36 tolerated(0.33) benign(0.032) TCGA-GS-A9TQ-01 15 28437166 28437166 C T HERC2 Missense_Mutation p.A2798T 0.12 possibly_damaging(0.88) TCGA-GS-A9TQ-01 15 42168420 42168420 C T SPTBN5 Silent p.A1338A 0.10 TCGA-GS-A9TQ-01 15 42172481 42172482 - ATGG SPTBN5 Frame_Shift_Ins p.M896Ifs*33 0.38 TCGA-GS-A9TQ-01 15 44914049 44914049 T G SPG11 Missense_Mutation p.N843T 0.25 tolerated(0.45) benign(0.006) TCGA-GS-A9TQ-01 15 44914054 44914054 T A SPG11 Missense_Mutation p.E841D 0.23 tolerated(0.07) possibly_damaging(0.801) TCGA-GS-A9TQ-01 15 72122636 72122636 C T MYO9A Missense_Mutation p.R2285H 0.27 tolerated(0.24) benign(0.008) TCGA-GS-A9TQ-01 15 72638887 72638887 C T HEXA Silent p.V437V 0.09 TCGA-GS-A9TQ-01 15 81188358 81188358 G A KIAA1199 Silent p.V456V 0.10 TCGA-GS-A9TQ-01 16 22152911 22152911 C T VWA3A Nonsense_Mutation p.Q798* 0.12 TCGA-GS-A9TQ-01 16 27475730 27475730 T C GTF3C1 Missense_Mutation p.D1928G 0.09 tolerated(0.23) benign(0.003) TCGA-GS-A9TQ-01 16 29818758 29818758 G A MAZ Missense_Mutation p.G218S 0.14 tolerated(0.63) benign(0.002) TCGA-GS-A9TQ-01 16 30020563 30020563 T C DOC2A Missense_Mutation p.D126G 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-GS-A9TQ-01 16 3789636 3789636 C T CREBBP Missense_Mutation p.C1408Y 0.42 unknown(0) TCGA-GS-A9TQ-01 16 47494777 47494777 C T ITFG1 Silent p.K60K 0.24 TCGA-GS-A9TQ-01 16 57695805 57695805 T G GPR56 Missense_Mutation p.F627V 0.25 deleterious(0.01) probably_damaging(1) TCGA-GS-A9TQ-01 16 81183402 81183402 C T PKD1L2 RNA 0.32 TCGA-GS-A9TQ-01 16 89880941 89880941 A T FANCA Silent p.S90S 0.22 TCGA-GS-A9TQ-01 17 15619433 15619433 A G ZNF286A Missense_Mutation p.E132G 0.24 tolerated(0.12) benign(0.099) TCGA-GS-A9TQ-01 17 18874410 18874410 G A SLC5A10 Missense_Mutation p.C242Y 0.10 deleterious(0) probably_damaging(1) TCGA-GS-A9TQ-01 17 32905908 32905908 C A C17orf102 Missense_Mutation p.G131V 0.24 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-GS-A9TQ-01 17 39974646 39974646 C T FKBP10 Silent p.G198G 0.17 TCGA-GS-A9TQ-01 17 48165647 48165647 C T ITGA3 Intron 0.28 TCGA-GS-A9TQ-01 17 48191739 48191739 G A SAMD14 Silent p.G296G 0.17 TCGA-GS-A9TQ-01 17 63010742 63010742 A C GNA13 Missense_Mutation p.L256R 0.23 deleterious(0.01) benign(0.16) TCGA-GS-A9TQ-01 17 63052533 63052533 C T GNA13 Missense_Mutation p.G60D 0.15 deleterious(0) probably_damaging(1) TCGA-GS-A9TQ-01 17 7592283 7592283 C T WRAP53 Missense_Mutation p.A106V 0.18 tolerated(0.24) benign(0.008) TCGA-GS-A9TQ-01 18 2940619 2940619 A G LPIN2 Missense_Mutation p.W228R 0.70 deleterious(0) probably_damaging(0.95) TCGA-GS-A9TQ-01 18 60985307 60985307 G A BCL2 Intron 0.19 TCGA-GS-A9TQ-01 18 60985514 60985514 C T BCL2 Missense_Mutation p.R129H 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-GS-A9TQ-01 18 60985893 60985893 G C BCL2 Missense_Mutation p.H3D 0.11 deleterious_low_confidence(0.02) benign(0.23) TCGA-GS-A9TQ-01 18 60985910 60985910 G C BCL2 5'UTR 0.13 TCGA-GS-A9TQ-01 18 60985999 60985999 T G BCL2 5'UTR 0.15 TCGA-GS-A9TQ-01 18 60986005 60986005 G A BCL2 5'UTR 0.18 TCGA-GS-A9TQ-01 18 60986020 60986020 C T BCL2 5'UTR 0.09 TCGA-GS-A9TQ-01 18 60986055 60986055 C G BCL2 5'UTR 0.09 TCGA-GS-A9TQ-01 18 60986085 60986085 G A BCL2 5'UTR 0.15 TCGA-GS-A9TQ-01 18 60986170 60986170 T C BCL2 5'UTR 0.23 TCGA-GS-A9TQ-01 18 72103932 72103932 C T FAM69C Missense_Mutation p.R355H 0.26 deleterious(0.02) benign(0.344) TCGA-GS-A9TQ-01 18 74611013 74611013 T A ZNF236 Missense_Mutation p.F575I 0.27 deleterious(0) probably_damaging(0.93) TCGA-GS-A9TQ-01 18 76757180 76757180 G A SALL3 Missense_Mutation p.G1254D 0.09 deleterious(0.02) probably_damaging(0.979) TCGA-GS-A9TQ-01 19 11507932 11507932 G A RGL3 Missense_Mutation p.P674S 0.37 tolerated(1) unknown(0) TCGA-GS-A9TQ-01 19 18108988 18108988 T C KCNN1 Missense_Mutation p.S469P 0.28 deleterious(0.01) benign(0.323) TCGA-GS-A9TQ-01 19 19384013 19384013 C T TM6SF2 Silent p.P4P 0.16 TCGA-GS-A9TQ-01 19 19627086 19627086 G C NDUFA13 Silent p.P13P 0.15 TCGA-GS-A9TQ-01 19 19655783 19655783 C T CILP2 Missense_Mutation p.T810I 0.38 tolerated(0.14) probably_damaging(0.999) TCGA-GS-A9TQ-01 19 35758490 35758490 G A LSR Silent p.R589R 0.30 TCGA-GS-A9TQ-01 19 38167230 38167230 C A ZNF781 Intron 0.26 TCGA-GS-A9TQ-01 19 39597667 39597667 G A PAPL Silent p.T398T 0.24 TCGA-GS-A9TQ-01 19 41012246 41012246 G A SPTBN4 Missense_Mutation p.R590Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-GS-A9TQ-01 19 41726690 41726690 G A AXL Missense_Mutation p.A79T 0.23 tolerated(0.09) benign(0.168) TCGA-GS-A9TQ-01 19 41932430 41932430 C G B3GNT8 Missense_Mutation p.S85T 0.22 tolerated(0.62) benign(0.003) TCGA-GS-A9TQ-01 19 42596098 42596108 AGAGGCAAAGC - POU2F2 Intron 0.31 TCGA-GS-A9TQ-01 19 47876137 47876137 G A DHX34 Missense_Mutation p.G640D 0.09 deleterious(0) probably_damaging(1) TCGA-GS-A9TQ-01 19 52149092 52149092 C T SIGLEC14 Missense_Mutation p.V215M 0.10 deleterious(0) possibly_damaging(0.901) TCGA-GS-A9TQ-01 19 55593864 55593864 C T EPS8L1 Missense_Mutation p.R370W 0.08 tolerated(0.18) possibly_damaging(0.724) TCGA-GS-A9TQ-01 19 58193614 58193614 T A AC003006.7 Splice_Site p.X11_splice 0.16 TCGA-GS-A9TQ-01 1 100609646 100609646 A T TRMT13 Missense_Mutation p.E255V 0.26 deleterious(0.03) benign(0.405) TCGA-GS-A9TQ-01 1 117492139 117492139 G A PTGFRN Nonsense_Mutation p.W386* 0.08 TCGA-GS-A9TQ-01 1 12638804 12638804 C T DHRS3 Missense_Mutation p.A214T 0.13 tolerated(1) benign(0.008) TCGA-GS-A9TQ-01 1 149859115 149859115 G A HIST2H2AB Missense_Mutation p.P118S 0.17 deleterious_low_confidence(0) benign(0.109) TCGA-GS-A9TQ-01 1 151630819 151630819 C T SNX27 Nonsense_Mutation p.R218* 0.16 TCGA-GS-A9TQ-01 1 152084202 152084203 - CGCCTCTCCTGCTGCTCG TCHH In_Frame_Ins p.E501_Q506dup 0.11 TCGA-GS-A9TQ-01 1 152285878 152285878 G A FLG Missense_Mutation p.S495L 0.12 probably_damaging(0.992) TCGA-GS-A9TQ-01 1 156931508 156931508 C T ARHGEF11 Silent p.L400L 0.23 TCGA-GS-A9TQ-01 1 19491323 19491323 A T UBR4 Nonsense_Mutation p.L1494* 0.25 TCGA-GS-A9TQ-01 1 204199657 204199657 C T PLEKHA6 Missense_Mutation p.E823K 0.14 deleterious(0) probably_damaging(0.99) TCGA-GS-A9TQ-01 1 213061854 213061854 C A FLVCR1 Missense_Mutation p.P444H 0.15 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TQ-01 1 220789284 220789284 G T MARK1 Missense_Mutation p.V167L 0.13 deleterious(0.02) probably_damaging(0.922) TCGA-GS-A9TQ-01 1 222805652 222805652 G A MIA3 Silent p.E1105E 0.18 TCGA-GS-A9TQ-01 1 228353822 228353822 T G IBA57 Missense_Mutation p.V102G 0.15 deleterious(0) possibly_damaging(0.703) TCGA-GS-A9TQ-01 1 235647809 235647809 C T B3GALNT2 Silent p.A128A 0.22 TCGA-GS-A9TQ-01 1 237819151 237819151 C A RYR2 Missense_Mutation p.L2666M 0.35 benign(0.064) TCGA-GS-A9TQ-01 1 237947505 237947505 G A RYR2 Missense_Mutation p.V4165I 0.15 probably_damaging(0.997) TCGA-GS-A9TQ-01 1 241842832 241842832 C T WDR64 Nonsense_Mutation p.R177* 0.12 TCGA-GS-A9TQ-01 1 248616329 248616329 C T OR2T2 Silent p.I77I 0.06 TCGA-GS-A9TQ-01 1 27023492 27023492 C T ARID1A Nonsense_Mutation p.Q200* 0.29 TCGA-GS-A9TQ-01 1 29063993 29063993 A T YTHDF2 Intron 0.08 TCGA-GS-A9TQ-01 1 37941180 37941180 G A ZC3H12A Missense_Mutation p.R28H 0.08 tolerated_low_confidence(0.3) benign(0.001) TCGA-GS-A9TQ-01 1 39877011 39877011 A C KIAA0754 Silent p.A222A 0.23 TCGA-GS-A9TQ-01 1 6700045 6700045 G A DNAJC11 Silent p.F390F 0.39 TCGA-GS-A9TQ-01 1 70339239 70339239 C T LRRC7 Intron 0.25 TCGA-GS-A9TQ-01 1 79472375 79472375 G A ELTD1 5'UTR 0.22 TCGA-GS-A9TQ-01 1 82421682 82421682 C A LPHN2 Missense_Mutation p.A635D 0.22 deleterious(0) probably_damaging(1) TCGA-GS-A9TQ-01 1 8395618 8395618 C T SLC45A1 Missense_Mutation p.A522V 0.24 tolerated(0.21) benign(0.069) TCGA-GS-A9TQ-01 1 9097845 9097845 C T SLC2A5 Missense_Mutation p.G436S 0.29 tolerated(0.83) possibly_damaging(0.609) TCGA-GS-A9TQ-01 20 23345887 23345887 G A GZF1 Silent p.E289E 0.30 TCGA-GS-A9TQ-01 20 35433301 35433301 T C SOGA1 Missense_Mutation p.N975S 0.22 tolerated(0.67) benign(0.279) TCGA-GS-A9TQ-01 20 44277958 44277958 A T WFDC11 Missense_Mutation p.C61S 0.17 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TQ-01 20 55910492 55910492 G A SPO11 Silent p.S205S 0.18 TCGA-GS-A9TQ-01 20 62194351 62194351 C G HELZ2 Missense_Mutation p.A1942P 0.26 tolerated(0.11) possibly_damaging(0.693) TCGA-GS-A9TQ-01 20 62572156 62572156 C T UCKL1 Silent p.A390A 0.31 TCGA-GS-A9TQ-01 21 10862976 10862976 G T IGHV1OR21-1 Missense_Mutation p.R91M 0.09 tolerated(0.13) possibly_damaging(0.713) TCGA-GS-A9TQ-01 21 34017300 34017300 T C SYNJ1 Silent p.A1175A 0.16 TCGA-GS-A9TQ-01 21 46048138 46048138 C T KRTAP10-9 3'UTR 0.55 TCGA-GS-A9TQ-01 21 46696981 46696981 G A POFUT2 Missense_Mutation p.T261M 0.14 deleterious(0.01) possibly_damaging(0.863) TCGA-GS-A9TQ-01 22 23223293 23223293 T G IGLV3-1 Nonsense_Mutation p.Y21* 0.15 TCGA-GS-A9TQ-01 22 23223332 23223332 A C IGLV3-1 Silent p.G34G 0.31 TCGA-GS-A9TQ-01 22 23223365 23223365 A G IGLV3-1 Silent p.K45K 0.13 TCGA-GS-A9TQ-01 22 23223522 23223522 G A IGLV3-1 Missense_Mutation p.A98T 0.11 tolerated(0.08) possibly_damaging(0.455) TCGA-GS-A9TQ-01 22 23230161 23230161 G A IGLL5 5'UTR 0.11 TCGA-GS-A9TQ-01 22 23230187 23230187 G C IGLL5 5'UTR 0.15 TCGA-GS-A9TQ-01 22 23230188 23230188 C T IGLL5 5'UTR 0.30 TCGA-GS-A9TQ-01 22 23230250 23230250 G A IGLL5 Missense_Mutation p.G6D 0.15 deleterious_low_confidence(0) benign(0.003) TCGA-GS-A9TQ-01 22 23230374 23230374 C T IGLL5 Silent p.S47S 0.19 TCGA-GS-A9TQ-01 22 23230394 23230394 C T IGLL5 Missense_Mutation p.A54V 0.09 deleterious_low_confidence(0.01) benign(0.185) TCGA-GS-A9TQ-01 22 23230400 23230400 T C IGLL5 Missense_Mutation p.V56A 0.18 tolerated_low_confidence(1) benign(0) TCGA-GS-A9TQ-01 22 23230415 23230415 C T IGLL5 Missense_Mutation p.S61F 0.15 deleterious_low_confidence(0) benign(0.002) TCGA-GS-A9TQ-01 22 23230440 23230440 G C IGLL5 Splice_Site p.X69_splice 0.19 TCGA-GS-A9TQ-01 22 23235965 23235965 G A IGLL5 Missense_Mutation p.V98I 0.21 tolerated_low_confidence(0.13) benign(0.008) TCGA-GS-A9TQ-01 22 23235999 23235999 G A IGLL5 Splice_Site p.X109_splice 0.20 TCGA-GS-A9TQ-01 22 28395011 28395011 C T TTC28 Missense_Mutation p.A1546T 0.17 tolerated(0.07) probably_damaging(0.967) TCGA-GS-A9TQ-01 22 40161596 40161599 GAGA - ENTHD1 Frame_Shift_Del p.L283Qfs*11 0.12 TCGA-GS-A9TQ-01 22 42473351 42473351 G A FAM109B Silent p.A18A 0.17 TCGA-GS-A9TQ-01 2 152342382 152342382 T A NEB Silent p.G8490G 0.09 TCGA-GS-A9TQ-01 2 1796099 1796099 C T MYT1L Silent p.P1136P 0.22 TCGA-GS-A9TQ-01 2 189929291 189929291 C A COL5A2 Missense_Mutation p.G570C 0.10 probably_damaging(1) TCGA-GS-A9TQ-01 2 24990975 24990975 G A NCOA1 Intron 0.15 TCGA-GS-A9TQ-01 2 26204558 26204558 T A KIF3C Missense_Mutation p.T77S 0.33 possibly_damaging(0.615) TCGA-GS-A9TQ-01 2 32773075 32773075 T C BIRC6 Silent p.L4323L 0.41 TCGA-GS-A9TQ-01 2 88485744 88485744 C T THNSL2 3'UTR 0.89 TCGA-GS-A9TQ-01 2 89065532 89065532 C T AC096579.1 5'Flank 0.90 TCGA-GS-A9TQ-01 2 90139096 90139096 G C IGKV1D-16 5'UTR 0.37 TCGA-GS-A9TQ-01 2 97559755 97559755 T C FAM178B Missense_Mutation p.R562G 0.12 deleterious(0.02) benign(0.076) TCGA-GS-A9TQ-01 3 10094085 10094085 T G FANCD2 Nonsense_Mutation p.Y520* 0.32 TCGA-GS-A9TQ-01 3 12641240 12641240 G A RAF1 Missense_Mutation p.T353I 0.26 tolerated(0.15) benign(0.151) TCGA-GS-A9TQ-01 3 13649652 13649652 G A FBLN2 Missense_Mutation p.G466D 0.09 tolerated(0.19) possibly_damaging(0.781) TCGA-GS-A9TQ-01 3 138763006 138763006 C G PRR23C Missense_Mutation p.E153Q 0.17 deleterious(0.02) probably_damaging(0.933) TCGA-GS-A9TQ-01 3 157031423 157031423 A C VEPH1 Missense_Mutation p.F666C 0.21 deleterious(0) probably_damaging(0.971) TCGA-GS-A9TQ-01 3 195488971 195488971 C T MUC4 Silent p.T4833T 0.11 TCGA-GS-A9TQ-01 3 21478509 21478509 C A ZNF385D Missense_Mutation p.C209F 0.23 deleterious(0) probably_damaging(0.99) TCGA-GS-A9TQ-01 3 27233594 27233594 G A NEK10 Missense_Mutation p.R811C 0.28 deleterious(0) probably_damaging(0.926) TCGA-GS-A9TQ-01 3 36898455 36898455 C A TRANK1 Missense_Mutation p.A876S 0.29 tolerated(0.37) benign(0.004) TCGA-GS-A9TQ-01 3 48420937 48420937 A C FBXW12 Missense_Mutation p.L221F 0.26 deleterious(0) probably_damaging(0.969) TCGA-GS-A9TQ-01 3 48677389 48677389 C T CELSR3 Missense_Mutation p.R3210Q 0.12 tolerated_low_confidence(0.18) benign(0.003) TCGA-GS-A9TQ-01 3 62248410 62248410 A G PTPRG Intron 0.31 TCGA-GS-A9TQ-01 4 129035899 129035899 T C LARP1B Splice_Site p.X387_splice 0.24 TCGA-GS-A9TQ-01 4 152069110 152069110 A C SH3D19 Silent p.R402R 0.22 TCGA-GS-A9TQ-01 4 169343761 169343761 G A DDX60L Silent p.L720L 0.23 TCGA-GS-A9TQ-01 4 170926948 170926948 G A MFAP3L Silent p.T27T 0.27 TCGA-GS-A9TQ-01 4 187549438 187549438 C T FAT1 Silent p.P1560P 0.25 TCGA-GS-A9TQ-01 4 27019483 27019483 C T STIM2 Missense_Mutation p.P555L 0.22 tolerated_low_confidence(0.35) benign(0.001) TCGA-GS-A9TQ-01 4 71110559 71110559 T C CSN3 Missense_Mutation p.V8A 0.29 deleterious(0) benign(0.153) TCGA-GS-A9TQ-01 4 71510318 71510318 G A ENAM Missense_Mutation p.G1059S 0.32 tolerated(0.12) benign(0.216) TCGA-GS-A9TQ-01 4 859015 859015 G A GAK Missense_Mutation p.P1021S 0.11 tolerated(0.18) benign(0.015) TCGA-GS-A9TQ-01 5 137801591 137801591 G C EGR1 Missense_Mutation p.Q47H 0.26 tolerated_low_confidence(0.08) unknown(0) TCGA-GS-A9TQ-01 5 138775093 138775093 A C DNAJC18 Splice_Site p.X14_splice 0.22 TCGA-GS-A9TQ-01 5 140201632 140201632 G A PCDHA5 Missense_Mutation p.R91Q 0.15 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-GS-A9TQ-01 5 158526702 158526702 G A EBF1 5'UTR 0.15 TCGA-GS-A9TQ-01 5 159680403 159680403 G A CCNJL Silent p.T430T 0.22 TCGA-GS-A9TQ-01 5 177546553 177546553 A T N4BP3 Splice_Site 0.08 TCGA-GS-A9TQ-01 5 178418872 178418872 C G GRM6 Missense_Mutation p.E239D 0.20 deleterious(0.02) benign(0.029) TCGA-GS-A9TQ-01 5 19571926 19571926 T A CDH18 Nonsense_Mutation p.K339* 0.23 TCGA-GS-A9TQ-01 5 36104120 36104120 T C LMBRD2 3'UTR 0.37 TCGA-GS-A9TQ-01 5 40834706 40834706 C T RPL37 Silent p.T2T 0.18 TCGA-GS-A9TQ-01 5 55237383 55237383 C T IL6ST Missense_Mutation p.V762M 0.22 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TQ-01 5 7766914 7766914 C T ADCY2 Missense_Mutation p.L737F 0.19 deleterious(0.04) benign(0.005) TCGA-GS-A9TQ-01 5 87491932 87491932 T C TMEM161B 3'UTR 0.33 TCGA-GS-A9TQ-01 6 134495148 134495148 G T SGK1 Missense_Mutation p.P170T 0.36 tolerated(0.1) benign(0.018) TCGA-GS-A9TQ-01 6 1395112 1395112 G A FOXF2 3'UTR 0.13 TCGA-GS-A9TQ-01 6 143092420 143092420 G A HIVEP2 Silent p.H1152H 0.10 TCGA-GS-A9TQ-01 6 152737628 152737629 - T SYNE1 Frame_Shift_Ins p.A1982Sfs*14 0.21 TCGA-GS-A9TQ-01 6 159646726 159646726 G A FNDC1 Silent p.T348T 0.30 TCGA-GS-A9TQ-01 6 24358062 24358062 C T KAAG1 Silent p.G65G 0.13 TCGA-GS-A9TQ-01 6 26124877 26124877 G A HIST1H2AC Intron 0.16 TCGA-GS-A9TQ-01 6 26156745 26156745 C G HIST1H1E Missense_Mutation p.L43V 0.20 tolerated(0.06) possibly_damaging(0.888) TCGA-GS-A9TQ-01 6 26156976 26156976 G A HIST1H1E Missense_Mutation p.A120T 0.15 tolerated(0.16) unknown(0) TCGA-GS-A9TQ-01 6 26157009 26157009 C A HIST1H1E Missense_Mutation p.P131T 0.13 tolerated(0.6) unknown(0) TCGA-GS-A9TQ-01 6 29912006 29912006 C T HLA-A Missense_Mutation p.R243W 0.28 deleterious_low_confidence(0.01) probably_damaging(0.943) TCGA-GS-A9TQ-01 6 31963866 31963866 C T C4A Missense_Mutation p.P1122L 0.09 deleterious(0) probably_damaging(0.944) TCGA-GS-A9TQ-01 6 35437145 35437145 C T RPL10A Intron 0.14 TCGA-GS-A9TQ-01 6 50803938 50803938 C T TFAP2B Missense_Mutation p.R256W 0.16 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TQ-01 6 56485371 56485371 T G DST Intron 0.14 TCGA-GS-A9TQ-01 6 7584954 7584954 C T DSP Silent p.L2487L 0.74 TCGA-GS-A9TQ-01 6 85446869 85446869 C T TBX18 Missense_Mutation p.R453K 0.49 deleterious(0.05) probably_damaging(0.931) TCGA-GS-A9TQ-01 6 99991423 99991423 G A CCNC 3'UTR 0.29 TCGA-GS-A9TQ-01 7 113518866 113518866 G A PPP1R3A Nonsense_Mutation p.R761* 0.28 TCGA-GS-A9TQ-01 7 128521690 128521690 G A KCP RNA 0.15 TCGA-GS-A9TQ-01 7 131155631 131155631 T C MKLN1 Silent p.L653L 0.08 TCGA-GS-A9TQ-01 7 141491114 141491114 C T TAS2R5 3'UTR 0.34 TCGA-GS-A9TQ-01 7 150557673 150557673 C T AOC1 Silent p.P647P 0.40 TCGA-GS-A9TQ-01 7 33019990 33019990 G A FKBP9 Missense_Mutation p.G240S 0.15 tolerated(0.48) benign(0.089) TCGA-GS-A9TQ-01 7 36455466 36455466 G A ANLN Missense_Mutation p.A499T 0.19 tolerated(0.24) benign(0.001) TCGA-GS-A9TQ-01 7 82785205 82785205 G A PCLO Missense_Mutation p.P251L 0.24 unknown(0) TCGA-GS-A9TQ-01 7 97841761 97841761 G A BHLHA15 Missense_Mutation p.R47Q 0.30 tolerated(0.06) benign(0.007) TCGA-GS-A9TQ-01 7 99720170 99720170 T - CNPY4 Frame_Shift_Del p.E105Sfs*6 0.12 TCGA-GS-A9TQ-01 8 13424552 13424552 C T C8orf48 Missense_Mutation p.L18F 0.48 tolerated_low_confidence(0.24) possibly_damaging(0.714) TCGA-GS-A9TQ-01 8 143958274 143958274 C T CYP11B1 Missense_Mutation p.R208Q 0.46 deleterious(0.02) possibly_damaging(0.595) TCGA-GS-A9TQ-01 8 2020563 2020563 A G MYOM2 Missense_Mutation p.Q311R 0.10 tolerated(0.15) benign(0.006) TCGA-GS-A9TQ-01 8 26627511 26627511 C T ADRA1A Intron 0.44 TCGA-GS-A9TQ-01 8 28588800 28588800 A T EXTL3 Missense_Mutation p.T737S 0.51 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TQ-01 9 102782910 102782910 A T ERP44 Missense_Mutation p.L192H 0.09 tolerated(0.58) benign(0.002) TCGA-GS-A9TQ-01 9 135221697 135221698 - GGAACTC SETX Frame_Shift_Ins p.L114Sfs*5 0.40 TCGA-GS-A9TQ-01 X 100613634 100613634 A C BTK Nonsense_Mutation p.Y315* 0.27 TCGA-GS-A9TQ-01 X 1546757 1546757 C T ASMTL Missense_Mutation p.R256H 0.09 tolerated(0.16) benign(0.005) TCGA-GS-A9TQ-01 X 23019719 23019719 C T DDX53 Silent p.S515S 0.45 TCGA-GS-A9TQ-01 X 3573445 3573445 G A PRKX Missense_Mutation p.T115M 0.08 deleterious(0) probably_damaging(0.982) TCGA-GS-A9TQ-01 X 43655095 43655095 C T MAOB Missense_Mutation p.R220Q 0.23 tolerated(0.09) benign(0.059) TCGA-GS-A9TQ-01 X 48755619 48755619 T G PQBP1 5'UTR 0.44 TCGA-GS-A9TQ-01 X 90692175 90692175 C T PABPC5 3'UTR 0.36 TCGA-GS-A9TT-01 10 105209145 105209145 T G CALHM2 Missense_Mutation p.Q185P 0.35 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TT-01 10 105209154 105209154 T A CALHM2 Missense_Mutation p.Y182F 0.34 tolerated(0.1) probably_damaging(0.981) TCGA-GS-A9TT-01 10 118220524 118220524 C A PNLIPRP3 Silent p.V204V 0.32 TCGA-GS-A9TT-01 10 11912414 11912414 C T PROSER2 3'UTR 0.25 TCGA-GS-A9TT-01 10 135205083 135205083 C T PAOX 3'UTR 0.68 TCGA-GS-A9TT-01 10 19896775 19896775 G A MALRD1 Missense_Mutation p.R1384H 0.34 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TT-01 10 24498119 24498119 G A KIAA1217 5'UTR 0.39 TCGA-GS-A9TT-01 10 24909679 24909679 T GG ARHGAP21 Frame_Shift_Ins p.Q382Pfs*9 0.31 TCGA-GS-A9TT-01 10 29820217 29820217 C T SVIL Silent p.R670R 0.08 TCGA-GS-A9TT-01 10 34558787 34558787 G A PARD3 Nonsense_Mutation p.R1076* 0.42 TCGA-GS-A9TT-01 10 65380676 65380676 G A REEP3 3'UTR 0.27 TCGA-GS-A9TT-01 10 70098156 70098156 G A HNRNPH3 Intron 0.29 TCGA-GS-A9TT-01 10 71176115 71176115 C A TACR2 5'UTR 0.38 TCGA-GS-A9TT-01 10 75535175 75535175 A G FUT11 Intron 0.65 TCGA-GS-A9TT-01 10 7780636 7780636 C A ITIH2 Silent p.A670A 0.42 TCGA-GS-A9TT-01 10 8100507 8100507 G A GATA3 Missense_Mutation p.V161I 0.38 tolerated(0.09) possibly_damaging(0.616) TCGA-GS-A9TT-01 10 96748888 96748888 C A CYP2C9 3'UTR 0.38 TCGA-GS-A9TT-01 10 97919399 97919399 T A ZNF518A RNA 0.29 TCGA-GS-A9TT-01 10 98405403 98405403 A C PIK3AP1 Missense_Mutation p.L401R 0.35 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TT-01 11 1251302 1251302 G T MUC5B Missense_Mutation p.G430W 0.21 unknown(0) TCGA-GS-A9TT-01 11 130340872 130340872 G A ADAMTS15 Missense_Mutation p.S593N 0.09 tolerated(0.48) benign(0.012) TCGA-GS-A9TT-01 11 134019043 134019043 C T JAM3 Silent p.G300G 0.45 TCGA-GS-A9TT-01 11 17741249 17741249 T A MYOD1 5'UTR 0.38 TCGA-GS-A9TT-01 11 20948897 20948897 A G NELL1 Missense_Mutation p.H268R 0.46 tolerated(0.07) benign(0.119) TCGA-GS-A9TT-01 11 55579714 55579714 A G OR5L1 Missense_Mutation p.I258V 0.49 deleterious(0.05) benign(0.012) TCGA-GS-A9TT-01 11 56345145 56345145 G C OR5M10 Missense_Mutation p.T18R 0.41 deleterious(0.01) probably_damaging(0.938) TCGA-GS-A9TT-01 11 58978120 58978120 G A MPEG1 3'UTR 0.51 TCGA-GS-A9TT-01 11 65715145 65715145 C A TSGA10IP RNA 0.09 TCGA-GS-A9TT-01 11 67168919 67168919 G A PPP1CA Intron 0.62 TCGA-GS-A9TT-01 11 77815052 77815052 A G ALG8 Silent p.S441S 0.51 TCGA-GS-A9TT-01 11 85396761 85396761 C T CCDC89 Missense_Mutation p.R138H 0.47 tolerated(0.18) probably_damaging(0.999) TCGA-GS-A9TT-01 11 92577432 92577432 G C FAT3 Silent p.V3633V 0.44 TCGA-GS-A9TT-01 11 94554798 94554798 G A AMOTL1 Silent p.P408P 0.44 TCGA-GS-A9TT-01 11 94583365 94583365 G A AMOTL1 Missense_Mutation p.E579K 0.62 deleterious(0.03) benign(0.024) TCGA-GS-A9TT-01 12 102078193 102078195 ATC - MYBPC1 Intron 0.38 TCGA-GS-A9TT-01 12 10339160 10339160 C T TMEM52B Silent p.H73H 0.38 TCGA-GS-A9TT-01 12 106460866 106460866 C T NUAK1 Missense_Mutation p.R567H 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-GS-A9TT-01 12 108011111 108011111 G A BTBD11 Missense_Mutation p.R710H 0.58 tolerated(0.5) probably_damaging(0.991) TCGA-GS-A9TT-01 12 11174305 11174306 GT - TAS2R19 Frame_Shift_Del p.T289Lfs*? 0.38 TCGA-GS-A9TT-01 12 113901352 113901352 G A LHX5 Silent p.G284G 0.68 TCGA-GS-A9TT-01 12 121881588 121881588 C T KDM2B Silent p.S820S 0.92 TCGA-GS-A9TT-01 12 122958280 122958280 C T ZCCHC8 Missense_Mutation p.V630I 0.61 tolerated(0.2) benign(0.001) TCGA-GS-A9TT-01 12 14923693 14923693 G A HIST4H4 3'UTR 0.44 TCGA-GS-A9TT-01 12 20787920 20787920 A G PDE3A Missense_Mutation p.E644G 0.38 tolerated(0.14) benign(0.011) TCGA-GS-A9TT-01 12 4922648 4922648 G T KCNA6 3'UTR 0.46 TCGA-GS-A9TT-01 12 53585241 53585241 A T ITGB7 3'UTR 0.35 TCGA-GS-A9TT-01 12 54676988 54676988 G T HNRNPA1 Nonsense_Mutation p.G293* 0.36 TCGA-GS-A9TT-01 12 58014218 58014218 G A SLC26A10 Missense_Mutation p.G72E 0.28 deleterious(0) probably_damaging(1) TCGA-GS-A9TT-01 12 60165112 60165112 A G SLC16A7 Silent p.V110V 0.04 TCGA-GS-A9TT-01 12 7061189 7061189 G A PTPN6 Missense_Mutation p.D59N 0.44 deleterious(0.02) possibly_damaging(0.716) TCGA-GS-A9TT-01 13 41768164 41768164 C T KBTBD7 Missense_Mutation p.G77D 0.09 tolerated(0.65) benign(0.133) TCGA-GS-A9TT-01 13 70370951 70370951 A G KLHL1 Silent p.L520L 0.44 TCGA-GS-A9TT-01 13 84454849 84454849 T G SLITRK1 Missense_Mutation p.N265T 0.47 tolerated(0.6) benign(0.004) TCGA-GS-A9TT-01 13 98829048 98829048 C T RNF113B Missense_Mutation p.R148Q 0.44 deleterious(0) benign(0.31) TCGA-GS-A9TT-01 14 103802040 103802040 C T EIF5 5'UTR 0.47 TCGA-GS-A9TT-01 14 105270191 105270191 G A ZBTB42 3'UTR 0.08 TCGA-GS-A9TT-01 14 106208440 106208440 G A IGHG1 Missense_Mutation p.P154S 0.52 tolerated(0.14) benign(0.028) TCGA-GS-A9TT-01 14 106209117 106209117 C G IGHG1 Missense_Mutation p.V98L 0.45 tolerated(0.09) benign(0.041) TCGA-GS-A9TT-01 14 106209130 106209130 C G IGHG1 Missense_Mutation p.K93N 0.47 tolerated(0.12) probably_damaging(0.985) TCGA-GS-A9TT-01 14 106209258 106209258 G A IGHG1 Missense_Mutation p.H51Y 0.53 deleterious(0.03) benign(0.234) TCGA-GS-A9TT-01 14 106209341 106209341 G A IGHG1 Missense_Mutation p.A23V 0.38 tolerated(1) benign(0.007) TCGA-GS-A9TT-01 14 106329459 106329459 A G IGHJ6 Missense_Mutation p.Y4H 0.87 benign(0.001) TCGA-GS-A9TT-01 14 106518449 106518449 T A IGHV3-7 Missense_Mutation p.Q101L 0.55 deleterious_low_confidence(0.01) probably_damaging(0.939) TCGA-GS-A9TT-01 14 106518589 106518589 G C IGHV3-7 Missense_Mutation p.S54R 0.62 tolerated_low_confidence(0.24) benign(0.015) TCGA-GS-A9TT-01 14 106518610 106518610 G A IGHV3-7 Silent p.T47T 0.68 TCGA-GS-A9TT-01 14 106539206 106539206 C T IGHV1-8 Missense_Mutation p.G75D 0.91 tolerated(0.09) benign(0.11) TCGA-GS-A9TT-01 14 106539281 106539281 C T IGHV1-8 Missense_Mutation p.S50N 0.93 tolerated(0.24) benign(0.013) TCGA-GS-A9TT-01 14 106539294 106539294 A C IGHV1-8 Missense_Mutation p.Y46D 0.93 deleterious(0.03) benign(0.168) TCGA-GS-A9TT-01 14 106552305 106552305 A T IGHV3-9 Missense_Mutation p.L112M 0.92 tolerated_low_confidence(0.21) benign(0.016) TCGA-GS-A9TT-01 14 106552307 106552307 G C IGHV3-9 Missense_Mutation p.A111G 0.92 deleterious_low_confidence(0.02) benign(0.433) TCGA-GS-A9TT-01 14 106552356 106552356 T G IGHV3-9 Missense_Mutation p.K95Q 0.89 deleterious_low_confidence(0.04) possibly_damaging(0.51) TCGA-GS-A9TT-01 14 106552411 106552411 G T IGHV3-9 Missense_Mutation p.S76R 0.85 deleterious_low_confidence(0.04) benign(0.048) TCGA-GS-A9TT-01 14 106552420 106552420 A G IGHV3-9 Silent p.N73N 0.81 TCGA-GS-A9TT-01 14 106552427 106552427 C T IGHV3-9 Missense_Mutation p.S71N 0.85 tolerated_low_confidence(0.62) benign(0.007) TCGA-GS-A9TT-01 14 106552480 106552480 C T IGHV3-9 Missense_Mutation p.M53I 0.83 deleterious_low_confidence(0.03) benign(0.062) TCGA-GS-A9TT-01 14 106758051 106758051 A G IGHV2-26 Silent p.P14P 0.27 TCGA-GS-A9TT-01 14 107170036 107170036 C T IGHV1-69 Silent p.K82K 0.28 TCGA-GS-A9TT-01 14 107170067 107170067 G C IGHV1-69 Missense_Mutation p.P72R 0.29 deleterious(0.01) benign(0.17) TCGA-GS-A9TT-01 14 107170121 107170121 C T IGHV1-69 Missense_Mutation p.S54N 0.33 tolerated(0.35) benign(0.003) TCGA-GS-A9TT-01 14 107170132 107170132 G A IGHV1-69 Silent p.S50S 0.57 TCGA-GS-A9TT-01 14 107170185 107170185 G A IGHV1-69 Missense_Mutation p.P33S 0.29 deleterious(0.02) possibly_damaging(0.783) TCGA-GS-A9TT-01 14 107170214 107170214 A C IGHV1-69 Missense_Mutation p.L23R 0.35 deleterious(0) probably_damaging(0.991) TCGA-GS-A9TT-01 14 107178895 107178895 G A IGHV2-70 Silent p.T94T 0.33 TCGA-GS-A9TT-01 14 107178934 107178934 G A IGHV2-70 Silent p.S81S 0.39 TCGA-GS-A9TT-01 14 107179031 107179031 C T IGHV2-70 Missense_Mutation p.S49N 0.41 deleterious(0.02) benign(0.001) TCGA-GS-A9TT-01 14 107179052 107179052 G C IGHV2-70 Missense_Mutation p.T42S 0.36 tolerated(0.53) benign(0.058) TCGA-GS-A9TT-01 14 107179121 107179121 G A IGHV2-70 Missense_Mutation p.S19F 0.17 deleterious(0) possibly_damaging(0.706) TCGA-GS-A9TT-01 14 21550212 21550212 G T ARHGEF40 Missense_Mutation p.R1062L 0.79 tolerated(0.09) possibly_damaging(0.454) TCGA-GS-A9TT-01 14 57268664 57268664 C G OTX2 Missense_Mutation p.S228T 0.49 deleterious(0.02) possibly_damaging(0.664) TCGA-GS-A9TT-01 14 64593362 64593362 A G SYNE2 Missense_Mutation p.K4585R 0.54 probably_damaging(0.999) TCGA-GS-A9TT-01 14 64749642 64749642 G A ESR2 Missense_Mutation p.S21F 0.50 deleterious(0.01) possibly_damaging(0.903) TCGA-GS-A9TT-01 14 74756201 74756201 C A ABCD4 Missense_Mutation p.V481F 0.52 deleterious(0.03) benign(0.148) TCGA-GS-A9TT-01 14 80677848 80677848 G A DIO2 5'Flank 0.31 TCGA-GS-A9TT-01 14 81659072 81659072 C T GTF2A1 Missense_Mutation p.A242T 0.07 tolerated(0.23) benign(0.002) TCGA-GS-A9TT-01 15 23006258 23006258 T C NIPA2 Missense_Mutation p.N349S 0.36 tolerated(0.62) benign(0) TCGA-GS-A9TT-01 15 23931384 23931384 T G NDN 3'UTR 0.47 TCGA-GS-A9TT-01 15 31234928 31234928 A G FAN1 3'UTR 0.65 TCGA-GS-A9TT-01 15 45400322 45400322 C T DUOX2 Silent p.L499L 0.10 TCGA-GS-A9TT-01 15 45439820 45439820 C T DUOX1 Nonsense_Mutation p.R838* 0.13 TCGA-GS-A9TT-01 15 48500287 48500287 C A SLC12A1 Missense_Mutation p.P124H 0.88 tolerated(0.14) possibly_damaging(0.528) TCGA-GS-A9TT-01 15 62362369 62362369 T C C2CD4A 3'UTR 0.91 TCGA-GS-A9TT-01 15 65370255 65370255 G A KBTBD13 Missense_Mutation p.A368T 0.35 tolerated(0.37) benign(0.004) TCGA-GS-A9TT-01 15 97326778 97326778 A G SPATA8 5'UTR 0.88 TCGA-GS-A9TT-01 16 10971239 10971239 G A CIITA Missense_Mutation p.G18S 0.45 deleterious(0.01) possibly_damaging(0.858) TCGA-GS-A9TT-01 16 11000690 11000691 TG - CIITA Frame_Shift_Del p.V448Lfs*34 0.34 TCGA-GS-A9TT-01 16 11348917 11348917 C G SOCS1 Missense_Mutation p.S140T 0.43 deleterious(0.04) probably_damaging(0.974) TCGA-GS-A9TT-01 16 1817276 1817276 A G MAPK8IP3 Missense_Mutation p.Q1071R 0.22 deleterious(0) benign(0.423) TCGA-GS-A9TT-01 16 18812811 18812811 C T ARL6IP1 5'UTR 0.48 TCGA-GS-A9TT-01 16 29996996 29996996 C T TAOK2 Silent p.P602P 0.54 TCGA-GS-A9TT-01 16 30441282 30441282 T C DCTPP1 Missense_Mutation p.E7G 0.17 tolerated_low_confidence(0.21) benign(0.002) TCGA-GS-A9TT-01 16 55862856 55862856 T A CES1 Missense_Mutation p.D28V 0.31 tolerated(0.17) benign(0.055) TCGA-GS-A9TT-01 16 77468401 77468401 G A ADAMTS18 Missense_Mutation p.A31V 0.25 tolerated(0.49) benign(0.03) TCGA-GS-A9TT-01 16 81819709 81819709 G A PLCG2 Missense_Mutation p.E39K 0.49 deleterious(0) possibly_damaging(0.783) TCGA-GS-A9TT-01 16 89348402 89348402 G A ANKRD11 Silent p.D1516D 0.37 TCGA-GS-A9TT-01 16 919924 919924 G A LMF1 Missense_Mutation p.H459Y 0.54 deleterious(0) probably_damaging(0.966) TCGA-GS-A9TT-01 17 10430004 10430004 G A MYH2 Silent p.L1367L 0.44 TCGA-GS-A9TT-01 17 10431136 10431136 G T MYH2 Nonsense_Mutation p.S1267* 0.43 TCGA-GS-A9TT-01 17 20861670 20861670 G A RP11-381P6.1 RNA 0.08 TCGA-GS-A9TT-01 17 40282554 40282554 C T RAB5C Silent p.P22P 0.09 TCGA-GS-A9TT-01 17 40336159 40336159 C T HCRT 3'UTR 0.08 TCGA-GS-A9TT-01 17 41174312 41174312 C T VAT1 Missense_Mutation p.A10T 0.67 tolerated(0.53) benign(0.006) TCGA-GS-A9TT-01 17 42751550 42751550 A G C17orf104 Missense_Mutation p.T949A 0.43 tolerated_low_confidence(0.35) benign(0.001) TCGA-GS-A9TT-01 17 53007452 53007452 C A TOM1L1 Silent p.R247R 0.40 TCGA-GS-A9TT-01 17 54671499 54671499 G A NOG 5'UTR 0.40 TCGA-GS-A9TT-01 17 56408595 56408595 C T BZRAP1 5'Flank 0.47 TCGA-GS-A9TT-01 17 57915672 57915672 G A VMP1 Missense_Mutation p.G331S 0.50 deleterious(0) probably_damaging(0.967) TCGA-GS-A9TT-01 17 57917181 57917181 G T VMP1 Missense_Mutation p.C377F 0.47 tolerated(0.15) benign(0.002) TCGA-GS-A9TT-01 17 65955903 65955903 A T BPTF Nonsense_Mutation p.K2725* 0.50 TCGA-GS-A9TT-01 17 6719262 6719262 C A TEKT1 Missense_Mutation p.D126Y 0.50 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TT-01 17 73265481 73265481 C T MIF4GD Missense_Mutation p.S51N 0.40 tolerated_low_confidence(0.54) benign(0.001) TCGA-GS-A9TT-01 17 79479013 79479013 C G ACTG1 Missense_Mutation p.E93D 0.55 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-GS-A9TT-01 17 79872227 79872227 C T SIRT7 Silent p.A253A 0.39 TCGA-GS-A9TT-01 18 19283631 19283631 G A ABHD3 Silent p.Y80Y 0.32 TCGA-GS-A9TT-01 18 21330979 21330979 G A LAMA3 Missense_Mutation p.R261H 0.33 benign(0.033) TCGA-GS-A9TT-01 18 28587034 28587034 T A DSC3 Missense_Mutation p.E576V 0.26 tolerated(0.47) benign(0.001) TCGA-GS-A9TT-01 18 29453491 29453491 T A TRAPPC8 Missense_Mutation p.Q655L 0.08 tolerated(0.22) benign(0.029) TCGA-GS-A9TT-01 18 47518736 47518736 A C MYO5B Missense_Mutation p.I226M 0.23 deleterious(0) probably_damaging(1) TCGA-GS-A9TT-01 19 1080926 1080926 G T HMHA1 Missense_Mutation p.A701S 0.45 tolerated(0.15) benign(0.086) TCGA-GS-A9TT-01 19 12059331 12059331 T G ZNF700 Nonsense_Mutation p.Y164* 0.50 TCGA-GS-A9TT-01 19 14076565 14076565 C G RFX1 Silent p.L662L 0.51 TCGA-GS-A9TT-01 19 17308611 17308612 - CG MYO9B Frame_Shift_Ins p.S1354Pfs*100 0.24 TCGA-GS-A9TT-01 19 19656250 19656250 C T CILP2 Missense_Mutation p.R966C 0.46 tolerated(0.06) possibly_damaging(0.582) TCGA-GS-A9TT-01 19 21607740 21607740 A C ZNF493 Missense_Mutation p.K760T 0.46 deleterious(0.04) possibly_damaging(0.482) TCGA-GS-A9TT-01 19 21991819 21991819 T G ZNF43 Missense_Mutation p.K340N 0.38 deleterious(0) probably_damaging(0.981) TCGA-GS-A9TT-01 19 23329617 23329617 A T ZNF730 3'UTR 0.08 TCGA-GS-A9TT-01 19 36340260 36340260 G A NPHS1 Missense_Mutation p.P240S 0.50 deleterious(0) probably_damaging(0.931) TCGA-GS-A9TT-01 19 40276412 40276412 G T LEUTX Silent p.G48G 0.37 TCGA-GS-A9TT-01 19 40374085 40374085 G A FCGBP Missense_Mutation p.P3998L 0.12 probably_damaging(0.913) TCGA-GS-A9TT-01 19 41008122 41008122 G A SPTBN4 Missense_Mutation p.V329M 0.09 deleterious(0) possibly_damaging(0.761) TCGA-GS-A9TT-01 19 41216028 41216028 G T ADCK4 Silent p.G101G 0.64 TCGA-GS-A9TT-01 19 42600043 42600043 G A POU2F2 Silent p.N234N 0.24 TCGA-GS-A9TT-01 19 44901382 44901382 G A ZNF285 5'UTR 0.56 TCGA-GS-A9TT-01 19 46375993 46375993 G A FOXA3 Missense_Mutation p.A244T 0.62 tolerated(0.42) benign(0.002) TCGA-GS-A9TT-01 19 46878959 46878959 C T PPP5C Silent p.G154G 0.60 TCGA-GS-A9TT-01 19 48205382 48205382 G A GLTSCR1 Missense_Mutation p.E1465K 0.12 probably_damaging(0.981) TCGA-GS-A9TT-01 19 49261218 49261218 G A FGF21 Missense_Mutation p.R124Q 0.63 tolerated(0.07) benign(0.319) TCGA-GS-A9TT-01 19 49973911 49973911 T C ALDH16A1 3'UTR 0.33 TCGA-GS-A9TT-01 19 54610330 54610330 G A TFPT 3'UTR 0.70 TCGA-GS-A9TT-01 19 55086869 55086869 G T LILRA2 Missense_Mutation p.G268C 0.34 deleterious(0.03) probably_damaging(0.997) TCGA-GS-A9TT-01 19 6586086 6586086 A T CD70 Nonsense_Mutation p.L176* 0.61 TCGA-GS-A9TT-01 19 827905 827905 G A AZU1 Splice_Site p.X20_splice 0.09 TCGA-GS-A9TT-01 19 8467024 8467024 G C RAB11B Silent p.L97L 0.30 TCGA-GS-A9TT-01 19 852291 852291 G A ELANE 5'UTR 0.12 TCGA-GS-A9TT-01 19 9204160 9204160 G T OR1M1 Missense_Mutation p.K80N 0.49 deleterious(0.03) possibly_damaging(0.632) TCGA-GS-A9TT-01 1 103463891 103463891 C A COL11A1 Missense_Mutation p.G724V 0.41 unknown(0) TCGA-GS-A9TT-01 1 111216563 111216563 C T KCNA3 Missense_Mutation p.S290N 0.45 tolerated(0.48) benign(0.001) TCGA-GS-A9TT-01 1 156146494 156146494 G A SEMA4A Silent p.P664P 0.54 TCGA-GS-A9TT-01 1 158724862 158724862 C A OR6K6 Missense_Mutation p.P86H 0.39 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TT-01 1 163318812 163318812 T C NUF2 Missense_Mutation p.I401T 0.44 tolerated(0.51) benign(0.001) TCGA-GS-A9TT-01 1 17270766 17270766 G T CROCC Missense_Mutation p.E660D 0.47 possibly_damaging(0.855) TCGA-GS-A9TT-01 1 177250054 177250054 C A BRINP2 Missense_Mutation p.T581N 0.52 deleterious(0.01) probably_damaging(0.994) TCGA-GS-A9TT-01 1 201252908 201252908 G A PKP1 Silent p.P26P 0.41 TCGA-GS-A9TT-01 1 203274876 203274876 G T BTG2 Nonsense_Mutation p.E48* 0.46 TCGA-GS-A9TT-01 1 203274877 203274877 G A BTG2 Splice_Site p.X48_splice 0.50 TCGA-GS-A9TT-01 1 21031118 21031118 C T KIF17 Silent p.A315A 0.43 TCGA-GS-A9TT-01 1 213189101 213189102 - C ANGEL2 5'UTR 0.30 TCGA-GS-A9TT-01 1 214510140 214510140 T A SMYD2 3'UTR 0.08 TCGA-GS-A9TT-01 1 216680418 216680418 C G ESRRG Missense_Mutation p.A426P 0.45 deleterious(0.04) probably_damaging(0.988) TCGA-GS-A9TT-01 1 226924565 226924565 C A ITPKB Nonsense_Mutation p.E199* 0.47 TCGA-GS-A9TT-01 1 234744253 234744253 C T IRF2BP2 Missense_Mutation p.A330T 0.47 tolerated(0.11) probably_damaging(0.956) TCGA-GS-A9TT-01 1 44084821 44084821 C T PTPRF Missense_Mutation p.R1532W 0.49 deleterious(0) probably_damaging(0.969) TCGA-GS-A9TT-01 1 62739545 62739545 C G KANK4 Missense_Mutation p.D411H 0.41 deleterious(0.03) possibly_damaging(0.707) TCGA-GS-A9TT-01 1 6614240 6614240 T A NOL9 Missense_Mutation p.H108L 0.44 tolerated(0.72) benign(0) TCGA-GS-A9TT-01 1 6614544 6614544 G A NOL9 Silent p.L7L 0.47 TCGA-GS-A9TT-01 1 6662376 6662376 G A KLHL21 Silent p.L168L 0.54 TCGA-GS-A9TT-01 1 6662386 6662386 G T KLHL21 Missense_Mutation p.H164Q 0.50 deleterious(0.02) possibly_damaging(0.75) TCGA-GS-A9TT-01 1 6662398 6662398 G T KLHL21 Missense_Mutation p.F160L 0.37 deleterious(0.01) probably_damaging(0.936) TCGA-GS-A9TT-01 1 89447318 89447320 CAA - RBMXL1 3'UTR 0.31 TCGA-GS-A9TT-01 20 13866955 13866955 T A SEL1L2 Missense_Mutation p.E293D 0.45 tolerated(0.58) benign(0.39) TCGA-GS-A9TT-01 20 23545654 23545654 G T CST9L Silent p.T125T 0.08 TCGA-GS-A9TT-01 20 30433068 30433068 G A FOXS1 Missense_Mutation p.T93M 0.40 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TT-01 20 31196227 31196227 G A RP11-410N8.4 Missense_Mutation p.R49Q 0.47 benign(0.417) TCGA-GS-A9TT-01 20 32246320 32246320 G T NECAB3 Missense_Mutation p.L345M 0.55 tolerated(0.33) probably_damaging(0.968) TCGA-GS-A9TT-01 20 32677684 32677684 C T EIF2S2 Missense_Mutation p.R285Q 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-GS-A9TT-01 20 3302910 3302910 C A C20orf194 Splice_Site p.X437_splice 0.38 TCGA-GS-A9TT-01 20 43922449 43922449 C T MATN4 Silent p.A568A 0.09 TCGA-GS-A9TT-01 20 57227165 57227165 A G STX16 Missense_Mutation p.S35G 0.52 tolerated_low_confidence(0.33) benign(0.05) TCGA-GS-A9TT-01 20 62195768 62195768 C T HELZ2 Silent p.P1469P 0.58 TCGA-GS-A9TT-01 21 22656515 22656515 G A NCAM2 Silent p.A44A 0.51 TCGA-GS-A9TT-01 21 32617950 32617950 C T TIAM1 Missense_Mutation p.D480N 0.52 tolerated(0.66) benign(0.121) TCGA-GS-A9TT-01 21 47671733 47671733 A C MCM3AP Intron 0.54 TCGA-GS-A9TT-01 22 20079074 20079074 C T DGCR8 Nonsense_Mutation p.Q475* 0.47 TCGA-GS-A9TT-01 22 20922831 20922831 G T MED15 Missense_Mutation p.Q355H 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-GS-A9TT-01 22 22517047 22517047 A C IGLV4-60 Missense_Mutation p.Y112S 0.64 deleterious(0.01) probably_damaging(0.964) TCGA-GS-A9TT-01 22 23154640 23154640 G A IGLV3-10 Missense_Mutation p.S70N 0.32 tolerated(0.35) benign(0.007) TCGA-GS-A9TT-01 22 23165647 23165647 G C IGLV2-8 Missense_Mutation p.S73T 0.36 tolerated_low_confidence(0.15) benign(0.007) TCGA-GS-A9TT-01 22 23223321 23223321 G A IGLV3-1 Missense_Mutation p.V31M 0.37 deleterious(0.04) possibly_damaging(0.762) TCGA-GS-A9TT-01 22 23223343 23223343 G C IGLV3-1 Missense_Mutation p.S38T 0.40 tolerated(0.62) benign(0.004) TCGA-GS-A9TT-01 22 23223381 23223381 G A IGLV3-1 Missense_Mutation p.A51T 0.56 tolerated(0.18) benign(0.035) TCGA-GS-A9TT-01 22 23223395 23223395 G A IGLV3-1 Silent p.Q55Q 0.30 TCGA-GS-A9TT-01 22 23223439 23223439 G C IGLV3-1 Missense_Mutation p.S70T 0.91 tolerated(0.13) benign(0.008) TCGA-GS-A9TT-01 22 23223488 23223488 G C IGLV3-1 Silent p.G86G 0.48 TCGA-GS-A9TT-01 22 23223496 23223496 C T IGLV3-1 Missense_Mutation p.A89V 0.48 deleterious(0.05) benign(0.324) TCGA-GS-A9TT-01 22 23223564 23223564 A T IGLV3-1 Missense_Mutation p.S112C 0.38 deleterious(0) probably_damaging(0.942) TCGA-GS-A9TT-01 22 23223565 23223565 G T IGLV3-1 Missense_Mutation p.S112I 0.39 deleterious(0.01) benign(0.296) TCGA-GS-A9TT-01 22 23230142 23230142 A T IGLL5 5'UTR 0.35 TCGA-GS-A9TT-01 22 23230145 23230145 A T IGLL5 5'UTR 0.37 TCGA-GS-A9TT-01 22 23230197 23230197 C T IGLL5 5'UTR 0.54 TCGA-GS-A9TT-01 22 23230234 23230234 A G IGLL5 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-GS-A9TT-01 22 23230297 23230297 C T IGLL5 Nonsense_Mutation p.Q22* 0.56 TCGA-GS-A9TT-01 22 23230309 23230310 - TTT IGLL5 In_Frame_Ins p.L29dup 0.35 TCGA-GS-A9TT-01 22 23230323 23230323 T C IGLL5 Silent p.G30G 0.36 TCGA-GS-A9TT-01 22 23230360 23230360 G A IGLL5 Missense_Mutation p.V43I 0.47 tolerated_low_confidence(0.06) benign(0) TCGA-GS-A9TT-01 22 23230403 23230403 G A IGLL5 Missense_Mutation p.G57E 0.44 tolerated_low_confidence(0.12) benign(0.019) TCGA-GS-A9TT-01 22 23230438 23230438 A G IGLL5 Missense_Mutation p.R69G 0.44 deleterious_low_confidence(0.02) benign(0.005) TCGA-GS-A9TT-01 22 23523318 23523318 C T BCR Silent p.I57I 0.39 TCGA-GS-A9TT-01 22 23523322 23523322 C T BCR Silent p.L59L 0.38 TCGA-GS-A9TT-01 22 23523331 23523331 T C BCR Silent p.L62L 0.52 TCGA-GS-A9TT-01 22 29709507 29709507 T C RASL10A Missense_Mutation p.D132G 0.47 deleterious(0.01) possibly_damaging(0.884) TCGA-GS-A9TT-01 22 36623579 36623579 T A APOL2 Silent p.S295S 0.49 TCGA-GS-A9TT-01 22 38153834 38153834 C T TRIOBP Missense_Mutation p.R1968C 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-GS-A9TT-01 22 43024249 43024249 T C CYB5R3 Silent p.G157G 0.26 TCGA-GS-A9TT-01 2 120020714 120020714 C T STEAP3 Missense_Mutation p.R433C 0.51 tolerated(0.18) benign(0.006) TCGA-GS-A9TT-01 2 131130741 131130741 C T PTPN18 Missense_Mutation p.R443C 0.42 deleterious(0) probably_damaging(1) TCGA-GS-A9TT-01 2 155555161 155555161 C A KCNJ3 5'UTR 0.71 TCGA-GS-A9TT-01 2 166201313 166201313 C T SCN2A Silent p.R937R 0.51 TCGA-GS-A9TT-01 2 196852948 196852948 A G DNAH7 Silent p.S453S 0.40 TCGA-GS-A9TT-01 2 202899479 202899479 G A FZD7 Missense_Mutation p.G37R 0.49 deleterious(0.03) possibly_damaging(0.578) TCGA-GS-A9TT-01 2 208865762 208865762 C A PLEKHM3 Missense_Mutation p.G201V 0.39 tolerated(0.08) possibly_damaging(0.543) TCGA-GS-A9TT-01 2 226447726 226447726 C T NYAP2 Silent p.G531G 0.08 TCGA-GS-A9TT-01 2 228882550 228882550 G A SPHKAP Missense_Mutation p.T1007M 0.45 deleterious(0) probably_damaging(0.987) TCGA-GS-A9TT-01 2 240984968 240984968 C A OR6B3 Missense_Mutation p.L174F 0.50 deleterious(0) probably_damaging(0.931) TCGA-GS-A9TT-01 2 77746080 77746080 G T LRRTM4 Silent p.S305S 0.45 TCGA-GS-A9TT-01 2 86302316 86302316 G A POLR1A Missense_Mutation p.A483V 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-GS-A9TT-01 2 89065474 89065474 T A AC096579.1 5'Flank 0.60 TCGA-GS-A9TT-01 2 89065487 89065487 T A AC096579.1 5'Flank 0.55 TCGA-GS-A9TT-01 2 89161050 89161050 C T IGKJ2 Silent p.K9K 0.83 TCGA-GS-A9TT-01 2 89161569 89161569 G A IGKC 5'Flank 0.75 TCGA-GS-A9TT-01 2 89185384 89185384 G C IGKV4-1 Missense_Mutation p.Q26H 0.89 deleterious(0) probably_damaging(1) TCGA-GS-A9TT-01 2 89246836 89246836 G A IGKV1-5 Nonsense_Mutation p.Q112* 0.85 TCGA-GS-A9TT-01 2 89246894 89246894 T A IGKV1-5 Missense_Mutation p.E92D 0.81 tolerated(1) benign(0) TCGA-GS-A9TT-01 2 89246999 89246999 C T IGKV1-5 Nonsense_Mutation p.W57* 0.80 TCGA-GS-A9TT-01 2 89247000 89247000 C G IGKV1-5 Missense_Mutation p.W57S 0.79 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TT-01 2 89247046 89247046 T A IGKV1-5 Missense_Mutation p.T42S 0.86 tolerated(0.14) benign(0.188) TCGA-GS-A9TT-01 2 89568175 89568175 T A IGKV1-33 Intron 0.10 TCGA-GS-A9TT-01 3 10080992 10080992 G A FANCD2 Missense_Mutation p.R174Q 0.44 deleterious(0.04) possibly_damaging(0.777) TCGA-GS-A9TT-01 3 107524323 107524323 A C BBX 3'UTR 0.55 TCGA-GS-A9TT-01 3 172025174 172025174 C T FNDC3B Silent p.S361S 0.51 TCGA-GS-A9TT-01 3 176756174 176756174 C A TBL1XR1 Missense_Mutation p.C325F 0.95 deleterious(0) probably_damaging(0.954) TCGA-GS-A9TT-01 3 195512623 195512623 G C MUC4 Missense_Mutation p.S1943C 0.12 unknown(0) TCGA-GS-A9TT-01 3 32022391 32022391 C T OSBPL10 Missense_Mutation p.R94K 0.48 deleterious(0.01) possibly_damaging(0.7) TCGA-GS-A9TT-01 3 32022420 32022420 G T OSBPL10 Nonsense_Mutation p.Y84* 0.43 TCGA-GS-A9TT-01 3 32022431 32022431 G A OSBPL10 Missense_Mutation p.L81F 0.47 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TT-01 3 32022546 32022546 G A OSBPL10 Silent p.S42S 0.42 TCGA-GS-A9TT-01 3 32022569 32022569 G A OSBPL10 Silent p.L35L 0.47 TCGA-GS-A9TT-01 3 32022573 32022573 G A OSBPL10 Silent p.C33C 0.46 TCGA-GS-A9TT-01 3 32022574 32022574 C T OSBPL10 Missense_Mutation p.C33Y 0.49 tolerated_low_confidence(0.07) unknown(0) TCGA-GS-A9TT-01 3 32022576 32022576 G A OSBPL10 Silent p.S32S 0.46 TCGA-GS-A9TT-01 3 32022601 32022601 G T OSBPL10 Missense_Mutation p.A24D 0.54 tolerated_low_confidence(0.05) unknown(0) TCGA-GS-A9TT-01 3 32022613 32022613 C T OSBPL10 Missense_Mutation p.S20N 0.42 tolerated_low_confidence(0.33) unknown(0) TCGA-GS-A9TT-01 3 32022619 32022619 C T OSBPL10 Missense_Mutation p.S18N 0.53 tolerated_low_confidence(0.23) unknown(0) TCGA-GS-A9TT-01 3 32022631 32022631 C G OSBPL10 Missense_Mutation p.S14T 0.39 deleterious_low_confidence(0) unknown(0) TCGA-GS-A9TT-01 3 36422203 36422203 A G STAC Missense_Mutation p.E23G 0.42 tolerated(0.05) benign(0) TCGA-GS-A9TT-01 3 38182641 38182641 T C MYD88 Missense_Mutation p.L273P 0.50 deleterious(0) probably_damaging(1) TCGA-GS-A9TT-01 3 45636456 45636456 T C LIMD1 Missense_Mutation p.F29L 0.84 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TT-01 3 49739255 49739255 C T RNF123 Silent p.S469S 0.11 TCGA-GS-A9TT-01 3 52521970 52521970 G T NISCH Missense_Mutation p.S821I 0.64 tolerated(0.22) benign(0.063) TCGA-GS-A9TT-01 3 56763546 56763546 G A ARHGEF3 Missense_Mutation p.R477C 0.46 deleterious(0) probably_damaging(1) TCGA-GS-A9TT-01 3 58631241 58631241 G A FAM3D Silent p.D86D 0.08 TCGA-GS-A9TT-01 3 64085223 64085223 C T PRICKLE2 Missense_Mutation p.R680H 0.47 tolerated(0.16) benign(0.01) TCGA-GS-A9TT-01 3 69230717 69230717 G A FRMD4B Silent p.D728D 0.47 TCGA-GS-A9TT-01 3 9991706 9991706 T C PRRT3 Missense_Mutation p.R32G 0.52 deleterious_low_confidence(0.03) benign(0.318) TCGA-GS-A9TT-01 4 110605694 110605699 CTGGCT - CCDC109B In_Frame_Del p.W237_L238del 0.30 TCGA-GS-A9TT-01 4 111398089 111398089 G A ENPEP Silent p.A173A 0.45 TCGA-GS-A9TT-01 4 1244748 1244748 G A CTBP1 5'Flank 0.10 TCGA-GS-A9TT-01 4 126241904 126241904 C G FAT4 Missense_Mutation p.D1446E 0.46 probably_damaging(0.999) TCGA-GS-A9TT-01 4 134071223 134071223 T G PCDH10 5'UTR 0.48 TCGA-GS-A9TT-01 4 146823525 146823525 C T ZNF827 Missense_Mutation p.A296T 0.41 deleterious(0) probably_damaging(0.996) TCGA-GS-A9TT-01 4 156137397 156137397 A C NPY2R 3'UTR 0.07 TCGA-GS-A9TT-01 4 159092159 159092159 G T FAM198B Silent p.G123G 0.37 TCGA-GS-A9TT-01 4 187194287 187194287 C T F11 Missense_Mutation p.A94V 0.39 tolerated(0.2) benign(0.372) TCGA-GS-A9TT-01 4 22389666 22389666 G A GPR125 Missense_Mutation p.R1210W 0.45 tolerated(0.07) probably_damaging(0.937) TCGA-GS-A9TT-01 4 24801223 24801223 C T SOD3 Missense_Mutation p.P27L 0.48 tolerated(0.33) benign(0.002) TCGA-GS-A9TT-01 4 41985108 41985108 G A DCAF4L1 3'UTR 0.39 TCGA-GS-A9TT-01 4 55979625 55979625 G T KDR Missense_Mutation p.N274K 0.41 tolerated(0.91) benign(0.008) TCGA-GS-A9TT-01 4 82065464 82065464 C T PRKG2 Missense_Mutation p.G392D 0.44 deleterious(0.02) probably_damaging(1) TCGA-GS-A9TT-01 5 10465050 10465050 A C ROPN1L Silent p.V228V 0.44 TCGA-GS-A9TT-01 5 1057587 1057587 G A SLC12A7 Missense_Mutation p.P1009S 0.08 deleterious(0.01) probably_damaging(1) TCGA-GS-A9TT-01 5 108672773 108672773 C A PJA2 3'UTR 0.47 TCGA-GS-A9TT-01 5 124079845 124079845 T A ZNF608 Missense_Mutation p.M280L 0.42 tolerated(1) benign(0.001) TCGA-GS-A9TT-01 5 137780958 137780958 G A REEP2 Missense_Mutation p.M151I 0.12 tolerated(0.05) possibly_damaging(0.636) TCGA-GS-A9TT-01 5 140249903 140249903 G A PCDHA11 Silent p.S405S 0.42 TCGA-GS-A9TT-01 5 140256908 140256908 C T PCDHA12 Silent p.G617G 0.49 TCGA-GS-A9TT-01 5 141244191 141244191 A T PCDH1 Missense_Mutation p.S569T 0.63 tolerated(0.5) benign(0.012) TCGA-GS-A9TT-01 5 150228106 150228106 T A IRGM Missense_Mutation p.F141I 0.49 deleterious(0) probably_damaging(0.959) TCGA-GS-A9TT-01 5 150922299 150922299 A G FAT2 Missense_Mutation p.F2797L 0.52 probably_damaging(0.996) TCGA-GS-A9TT-01 5 153433724 153433724 C T MFAP3 3'UTR 0.41 TCGA-GS-A9TT-01 5 153434217 153434217 T G MFAP3 3'UTR 0.36 TCGA-GS-A9TT-01 5 153434264 153434264 A G MFAP3 3'UTR 0.40 TCGA-GS-A9TT-01 5 154393282 154393282 G A KIF4B 5'UTR 0.40 TCGA-GS-A9TT-01 5 180420041 180420041 C T BTNL3 Missense_Mutation p.A93V 0.10 tolerated(0.23) benign(0.01) TCGA-GS-A9TT-01 5 23527377 23527377 G A PRDM9 Missense_Mutation p.R727Q 0.32 tolerated(0.35) probably_damaging(0.993) TCGA-GS-A9TT-01 5 58147116 58147116 G A RAB3C Missense_Mutation p.A208T 0.09 tolerated(0.17) benign(0.004) TCGA-GS-A9TT-01 5 63626166 63626166 C T RNF180 Silent p.S504S 0.41 TCGA-GS-A9TT-01 5 9119196 9119196 G A SEMA5A Silent p.I613I 0.39 TCGA-GS-A9TT-01 5 94994492 94994492 C T SPATA9 Silent p.E200E 0.43 TCGA-GS-A9TT-01 6 105526426 105526426 C T LIN28B Missense_Mutation p.A174V 0.88 tolerated(0.24) benign(0.004) TCGA-GS-A9TT-01 6 117686814 117686814 A G ROS1 Missense_Mutation p.L968P 0.76 deleterious(0.04) possibly_damaging(0.486) TCGA-GS-A9TT-01 6 121770280 121770280 T C GJA1 3'UTR 0.83 TCGA-GS-A9TT-01 6 145148756 145148756 A G UTRN Silent p.Q3181Q 0.75 TCGA-GS-A9TT-01 6 17629629 17629629 A C NUP153 Missense_Mutation p.I934R 0.44 deleterious(0.02) benign(0.125) TCGA-GS-A9TT-01 6 26158724 26158724 G A HIST1H2BD Silent p.K109K 0.45 TCGA-GS-A9TT-01 6 27100220 27100220 G T HIST1H2BJ Missense_Mutation p.P104T 0.50 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-GS-A9TT-01 6 27860549 27860549 C G HIST1H2AM Missense_Mutation p.A127P 0.46 deleterious_low_confidence(0.03) benign(0.245) TCGA-GS-A9TT-01 6 31778920 31778920 G A HSPA1L Missense_Mutation p.S277L 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GS-A9TT-01 6 37138332 37138332 C G PIM1 5'UTR 0.46 TCGA-GS-A9TT-01 6 37138563 37138563 C T PIM1 Missense_Mutation p.P33S 0.47 tolerated(0.51) benign(0.041) TCGA-GS-A9TT-01 6 37138577 37138577 G T PIM1 Missense_Mutation p.Q37H 0.42 tolerated(0.31) benign(0.069) TCGA-GS-A9TT-01 6 37138591 37138591 C T PIM1 Missense_Mutation p.P42L 0.42 deleterious(0.02) possibly_damaging(0.669) TCGA-GS-A9TT-01 6 37138592 37138592 G A PIM1 Silent p.P42P 0.43 TCGA-GS-A9TT-01 6 37138804 37138804 G C PIM1 Missense_Mutation p.E79D 0.49 tolerated(0.19) benign(0.004) TCGA-GS-A9TT-01 6 37138901 37138901 C T PIM1 Missense_Mutation p.P81S 0.37 tolerated(0.25) benign(0.302) TCGA-GS-A9TT-01 6 37138951 37138951 C T PIM1 Silent p.S97S 0.48 TCGA-GS-A9TT-01 6 37139044 37139044 T A PIM1 Missense_Mutation p.D128E 0.39 deleterious(0) probably_damaging(0.991) TCGA-GS-A9TT-01 6 37139045 37139045 C G PIM1 Missense_Mutation p.L129V 0.39 deleterious(0.02) possibly_damaging(0.821) TCGA-GS-A9TT-01 6 37139097 37139097 G A PIM1 Missense_Mutation p.S146N 0.46 tolerated(0.64) benign(0.005) TCGA-GS-A9TT-01 6 37139104 37139104 C T PIM1 Silent p.F148F 0.47 TCGA-GS-A9TT-01 6 37139128 37139128 G A PIM1 Silent p.R156R 0.48 TCGA-GS-A9TT-01 6 37139209 37139209 G C PIM1 Missense_Mutation p.K183N 0.37 deleterious(0.02) probably_damaging(1) TCGA-GS-A9TT-01 6 42222591 42222591 G A TRERF1 Missense_Mutation p.A885V 0.08 deleterious(0.02) possibly_damaging(0.483) TCGA-GS-A9TT-01 6 52761609 52761609 A C GSTA3 Missense_Mutation p.F222V 0.43 deleterious(0.01) benign(0.015) TCGA-GS-A9TT-01 6 55924958 55924958 G A COL21A1 Silent p.S822S 0.47 TCGA-GS-A9TT-01 6 75890902 75890902 A C COL12A1 Missense_Mutation p.S639R 0.40 benign(0.001) TCGA-GS-A9TT-01 6 75953484 75953484 G A COX7A2 Silent p.F21F 0.08 TCGA-GS-A9TT-01 6 80341191 80341191 G A SH3BGRL2 Missense_Mutation p.V5M 0.40 deleterious(0.02) possibly_damaging(0.673) TCGA-GS-A9TT-01 7 100028547 100028547 G A MEPCE Silent p.Q302Q 0.15 TCGA-GS-A9TT-01 7 121652288 121652288 T G PTPRZ1 Missense_Mutation p.V1063G 0.50 tolerated_low_confidence(0.34) benign(0.002) TCGA-GS-A9TT-01 7 122342946 122342946 C A RNF148 5'UTR 0.67 TCGA-GS-A9TT-01 7 128526544 128526544 C T KCP RNA 0.46 TCGA-GS-A9TT-01 7 141618791 141618791 T C OR9A4 Missense_Mutation p.M39T 0.46 tolerated(0.77) benign(0.044) TCGA-GS-A9TT-01 7 148454103 148454103 T C CUL1 Missense_Mutation p.V115A 0.37 deleterious(0) possibly_damaging(0.595) TCGA-GS-A9TT-01 7 148769189 148769189 C T ZNF786 Silent p.A225A 0.40 TCGA-GS-A9TT-01 7 24843988 24843991 TCTC - OSBPL3 Frame_Shift_Del p.R837Kfs*6 0.49 TCGA-GS-A9TT-01 7 5352504 5352504 G A TNRC18 Missense_Mutation p.T2673I 0.08 unknown(0) TCGA-GS-A9TT-01 7 73477659 73477659 C T ELN Silent p.A626A 0.14 TCGA-GS-A9TT-01 7 74489459 74489459 C A WBSCR16 Missense_Mutation p.A39S 0.70 tolerated(0.7) probably_damaging(0.978) TCGA-GS-A9TT-01 7 79082451 79082451 C T MAGI2 Silent p.S62S 0.43 TCGA-GS-A9TT-01 8 13947902 13947902 A G SGCZ 3'UTR 0.60 TCGA-GS-A9TT-01 8 2964161 2964161 C A CSMD1 Missense_Mutation p.D2280Y 0.43 probably_damaging(0.923) TCGA-GS-A9TT-01 8 37732263 37732263 T C RAB11FIP1 Silent p.E464E 0.43 TCGA-GS-A9TT-01 8 39782769 39782769 C T IDO1 Silent p.D245D 0.41 TCGA-GS-A9TT-01 8 89128762 89128762 G T MMP16 Missense_Mutation p.L353I 0.49 deleterious(0.05) probably_damaging(0.999) TCGA-GS-A9TT-01 9 114448905 114448905 T C C9orf84 3'UTR 0.37 TCGA-GS-A9TT-01 9 140712547 140712547 A T EHMT1 Missense_Mutation p.D1166V 0.42 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TT-01 9 21994305 21994305 A G RP11-149I2.4 5'Flank 0.86 TCGA-GS-A9TT-01 9 21994383 21994383 A G RP11-149I2.4 5'Flank 0.82 TCGA-GS-A9TT-01 9 79635701 79635701 G A FOXB2 Silent p.A377A 0.48 TCGA-GS-A9TT-01 9 91926132 91926132 C T CKS2 5'UTR 0.40 TCGA-GS-A9TT-01 9 96021886 96021886 C G WNK2 Missense_Mutation p.P1019R 0.38 unknown(0) TCGA-GS-A9TT-01 9 96416812 96416812 T A PHF2 Missense_Mutation p.Y303N 0.37 deleterious(0) unknown(0) TCGA-GS-A9TT-01 X 115303934 115303934 T G AGTR2 Missense_Mutation p.F134C 0.92 deleterious(0) probably_damaging(0.984) TCGA-GS-A9TT-01 X 142803837 142803837 C T SPANXN2 5'UTR 0.90 TCGA-GS-A9TT-01 X 15301725 15301725 G A ASB11 Missense_Mutation p.R292C 0.97 deleterious(0) probably_damaging(1) TCGA-GS-A9TT-01 X 16804577 16804577 G A TXLNG 5'UTR 0.11 TCGA-GS-A9TT-01 X 16881137 16881137 A C RBBP7 Missense_Mutation p.V127G 0.92 deleterious(0) probably_damaging(0.932) TCGA-GS-A9TT-01 X 35969413 35969413 T C CXorf22 Silent p.N274N 0.90 TCGA-GS-A9TT-01 X 39911471 39911471 C - BCOR Frame_Shift_Del p.S1720Ifs*5 0.49 TCGA-GS-A9TT-01 X 48775918 48775918 G A PIM2 Silent p.G22G 0.87 TCGA-GS-A9TT-01 X 53421775 53421775 A T SMC1A Missense_Mutation p.S966T 0.10 tolerated(1) benign(0.021) TCGA-GS-A9TT-01 X 71571612 71571612 C T HDAC8 Missense_Mutation p.R361Q 0.86 tolerated(0.28) benign(0) TCGA-GS-A9TT-01 X 83127996 83127996 G T CYLC1 Missense_Mutation p.A94S 0.91 tolerated(0.07) possibly_damaging(0.644) TCGA-GS-A9TU-01 10 5979175 5979175 G A FBXO18 Missense_Mutation p.A1073T 0.30 tolerated(0.34) benign(0.01) TCGA-GS-A9TU-01 11 60470906 60470906 C T MS4A8 Missense_Mutation p.T92M 0.23 tolerated(0.09) possibly_damaging(0.672) TCGA-GS-A9TU-01 11 64112089 64112089 C A CCDC88B Missense_Mutation p.D692E 0.31 tolerated(0.73) benign(0.001) TCGA-GS-A9TU-01 11 6424921 6424921 G A APBB1 Missense_Mutation p.R285W 0.23 tolerated(0.15) benign(0.409) TCGA-GS-A9TU-01 11 66114330 66114330 G T B3GNT1 Missense_Mutation p.D229E 0.05 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TU-01 11 76507520 76507520 C T TSKU Missense_Mutation p.S287L 0.24 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TU-01 12 113495921 113495921 G C DTX1 5'UTR 0.28 TCGA-GS-A9TU-01 12 119942901 119942901 C T CCDC60 Nonsense_Mutation p.R226* 0.20 TCGA-GS-A9TU-01 12 122248124 122248125 AG - SETD1B Frame_Shift_Del p.S425Wfs*16 0.15 TCGA-GS-A9TU-01 12 25297343 25297343 C A CASC1 Nonsense_Mutation p.E320* 0.24 TCGA-GS-A9TU-01 12 55641766 55641767 - A OR6C74 Frame_Shift_Ins p.A235Sfs*36 0.20 TCGA-GS-A9TU-01 12 85255259 85255259 A C SLC6A15 3'UTR 0.21 TCGA-GS-A9TU-01 13 32605904 32605904 T C FRY 5'UTR 0.23 TCGA-GS-A9TU-01 13 52346027 52346027 C T DHRS12 Silent p.T212T 0.23 TCGA-GS-A9TU-01 13 84453454 84453454 G A SLITRK1 3'UTR 0.25 TCGA-GS-A9TU-01 15 70949255 70949255 A T UACA 3'UTR 0.26 TCGA-GS-A9TU-01 15 74623324 74623324 G A CCDC33 Silent p.K516K 0.25 TCGA-GS-A9TU-01 15 75706589 75706589 A C SIN3A Missense_Mutation p.Y144D 0.21 deleterious(0) probably_damaging(1) TCGA-GS-A9TU-01 15 87099482 87099482 A C AGBL1 Missense_Mutation p.K962T 0.26 deleterious_low_confidence(0.03) benign(0.029) TCGA-GS-A9TU-01 16 3026927 3026927 A T PKMYT1 Missense_Mutation p.F39Y 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-GS-A9TU-01 16 30747922 30747922 C T SRCAP Nonsense_Mutation p.R2329* 0.34 TCGA-GS-A9TU-01 16 89351721 89351722 - T ANKRD11 Frame_Shift_Ins p.T410Nfs*28 0.18 TCGA-GS-A9TU-01 17 11666907 11666907 C T DNAH9 Silent p.F2382F 0.30 TCGA-GS-A9TU-01 17 14005475 14005475 T C COX10 Silent p.A180A 0.34 TCGA-GS-A9TU-01 17 36959083 36959083 G A CWC25 Missense_Mutation p.R345W 0.24 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TU-01 17 38244519 38244519 C T THRA Missense_Mutation p.L250F 0.23 deleterious(0) probably_damaging(0.986) TCGA-GS-A9TU-01 17 40716134 40716134 G A COASY Missense_Mutation p.V315M 0.23 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TU-01 17 73008803 73008803 C G ICT1 Missense_Mutation p.R8G 0.23 deleterious_low_confidence(0.02) benign(0.171) TCGA-GS-A9TU-01 17 77704925 77704925 C T ENPP7 Silent p.L8L 0.26 TCGA-GS-A9TU-01 17 79225043 79225043 T A SLC38A10 Intron 0.16 TCGA-GS-A9TU-01 18 28662381 28662381 T G DSC2 Silent p.T362T 0.12 TCGA-GS-A9TU-01 18 28911696 28911696 G A DSG1 Missense_Mutation p.A184T 0.10 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TU-01 18 61323022 61323022 C T SERPINB3 Missense_Mutation p.A348T 0.12 tolerated(0.09) benign(0.001) TCGA-GS-A9TU-01 19 12691217 12691217 C T ZNF490 3'UTR 0.38 TCGA-GS-A9TU-01 19 15794330 15794330 C A CYP4F12 Silent p.I225I 0.20 TCGA-GS-A9TU-01 19 17751347 17751347 G A UNC13A Silent p.S920S 0.22 TCGA-GS-A9TU-01 19 18256564 18256564 C T MAST3 Silent p.D988D 0.25 TCGA-GS-A9TU-01 19 18546466 18546466 C T ISYNA1 Silent p.P387P 0.27 TCGA-GS-A9TU-01 19 3586639 3586639 G A GIPC3 Silent p.L124L 0.31 TCGA-GS-A9TU-01 19 45525433 45525433 G A RELB Silent p.R209R 0.24 TCGA-GS-A9TU-01 19 45662328 45662328 G A NKPD1 Missense_Mutation p.A41V 0.05 tolerated_low_confidence(0.26) benign(0.003) TCGA-GS-A9TU-01 19 49812603 49812603 G A SLC6A16 Silent p.L314L 0.07 TCGA-GS-A9TU-01 19 57135194 57135194 C T ZNF71 3'UTR 0.40 TCGA-GS-A9TU-01 1 12943023 12943023 G A PRAMEF4 Missense_Mutation p.R65C 0.24 tolerated(0.21) benign(0.014) TCGA-GS-A9TU-01 1 160209665 160209665 C T DCAF8 Missense_Mutation p.R182H 0.20 deleterious(0.01) benign(0.226) TCGA-GS-A9TU-01 1 23779193 23779193 T C ASAP3 Silent p.R140R 0.20 TCGA-GS-A9TU-01 1 37947259 37947259 G A ZC3H12A Missense_Mutation p.R214Q 0.15 deleterious(0) probably_damaging(1) TCGA-GS-A9TU-01 1 43637804 43637804 G T EBNA1BP2 Missense_Mutation p.R51S 0.09 deleterious_low_confidence(0.03) benign(0.042) TCGA-GS-A9TU-01 1 9776131 9776131 A G PIK3CD Missense_Mutation p.S199G 0.14 tolerated(0.12) benign(0.042) TCGA-GS-A9TU-01 20 16347700 16347700 G A KIF16B 3'UTR 0.07 TCGA-GS-A9TU-01 20 25052442 25052442 G T VSX1 3'Flank 0.23 TCGA-GS-A9TU-01 20 44469595 44469595 C T SNX21 Silent p.L255L 0.27 TCGA-GS-A9TU-01 22 23223364 23223364 A C IGLV3-1 Missense_Mutation p.K45T 0.23 tolerated(0.05) benign(0.009) TCGA-GS-A9TU-01 22 23230413 23230413 A G IGLL5 Silent p.R60R 0.53 TCGA-GS-A9TU-01 2 165948871 165948871 A C SCN3A Missense_Mutation p.V1567G 0.21 tolerated(0.26) possibly_damaging(0.495) TCGA-GS-A9TU-01 2 166930005 166930006 - T SCN1A Frame_Shift_Ins p.D43Rfs*2 0.20 TCGA-GS-A9TU-01 2 211464275 211464275 T C CPS1 Silent p.A519A 0.20 TCGA-GS-A9TU-01 2 27587653 27587653 A T EIF2B4 Missense_Mutation p.L455Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TU-01 2 71778761 71778761 C T DYSF Missense_Mutation p.R573W 0.30 deleterious(0) probably_damaging(1) TCGA-GS-A9TU-01 2 74425718 74425718 C T MTHFD2 5'UTR 0.18 TCGA-GS-A9TU-01 2 77746792 77746792 A G LRRTM4 Missense_Mutation p.L68S 0.24 deleterious(0) probably_damaging(1) TCGA-GS-A9TU-01 3 114069826 114069826 C T ZBTB20 Missense_Mutation p.E367K 0.21 deleterious(0.01) possibly_damaging(0.905) TCGA-GS-A9TU-01 3 121202408 121202408 G A POLQ Missense_Mutation p.P1932L 0.20 deleterious(0) possibly_damaging(0.676) TCGA-GS-A9TU-01 3 124560249 124560249 A G ITGB5 Missense_Mutation p.L254P 0.07 deleterious(0) probably_damaging(1) TCGA-GS-A9TU-01 3 147128808 147128808 C T ZIC1 Silent p.P303P 0.18 TCGA-GS-A9TU-01 3 148459567 148459567 T G AGTR1 Missense_Mutation p.F249V 0.21 deleterious(0) probably_damaging(1) TCGA-GS-A9TU-01 3 157160548 157160548 A G PTX3 Missense_Mutation p.Q309R 0.19 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TU-01 3 164730788 164730788 T C SI Missense_Mutation p.T1348A 0.20 tolerated(0.05) benign(0.411) TCGA-GS-A9TU-01 3 167033615 167033615 A G ZBBX Silent p.T399T 0.18 TCGA-GS-A9TU-01 3 49718542 49718542 G A APEH Silent p.G436G 0.31 TCGA-GS-A9TU-01 4 126336502 126336502 C T FAT4 Silent p.D2128D 0.27 TCGA-GS-A9TU-01 4 174254780 174254780 G C HMGB2 Missense_Mutation p.N7K 0.18 tolerated(1) benign(0.008) TCGA-GS-A9TU-01 4 17690114 17690114 C T FAM184B Missense_Mutation p.R510H 0.22 tolerated(0.54) benign(0.001) TCGA-GS-A9TU-01 4 77192845 77192845 G T FAM47E Missense_Mutation p.S265I 0.22 tolerated(0.25) benign(0.028) TCGA-GS-A9TU-01 4 77288451 77288451 A C CCDC158 Missense_Mutation p.L609R 0.19 deleterious(0) benign(0.241) TCGA-GS-A9TU-01 4 81967644 81967644 A - BMP3 Frame_Shift_Del p.K358Rfs*20 0.13 TCGA-GS-A9TU-01 5 160047890 160047890 T G ATP10B Missense_Mutation p.K627T 0.19 deleterious(0.03) possibly_damaging(0.635) TCGA-GS-A9TU-01 5 173534490 173534490 C G NSG2 Silent p.P166P 0.25 TCGA-GS-A9TU-01 5 174936147 174936147 A G SFXN1 Missense_Mutation p.M93V 0.27 deleterious(0) possibly_damaging(0.612) TCGA-GS-A9TU-01 5 38949525 38949525 C T RICTOR Intron 0.20 TCGA-GS-A9TU-01 6 107811737 107811737 A T SOBP 5'UTR 0.38 TCGA-GS-A9TU-01 6 10875031 10875031 C T GCM2 Missense_Mutation p.V240I 0.33 tolerated(0.16) benign(0.002) TCGA-GS-A9TU-01 6 121770444 121770444 T G GJA1 3'UTR 0.04 TCGA-GS-A9TU-01 6 24523014 24523014 A C ALDH5A1 Missense_Mutation p.Q358P 0.22 deleterious(0) benign(0.265) TCGA-GS-A9TU-01 6 25771240 25771240 G C SLC17A4 Missense_Mutation p.G236R 0.25 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TU-01 6 41903710 41903710 T C CCND3 Missense_Mutation p.T283A 0.20 deleterious(0.01) probably_damaging(0.978) TCGA-GS-A9TU-01 7 110763849 110763849 C A LRRN3 Missense_Mutation p.L341M 0.37 deleterious(0.03) probably_damaging(1) TCGA-GS-A9TU-01 7 128475620 128475620 G A FLNC Missense_Mutation p.C198Y 0.47 deleterious(0) probably_damaging(1) TCGA-GS-A9TU-01 7 143747902 143747902 G A OR2A5 Missense_Mutation p.M136I 0.24 deleterious(0.02) benign(0.049) TCGA-GS-A9TU-01 7 2976821 2976821 T G CARD11 Missense_Mutation p.L397F 0.40 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TU-01 7 45125119 45125119 G A NACAD Silent p.Y220Y 0.19 TCGA-GS-A9TU-01 7 88963200 88963200 A C ZNF804B Missense_Mutation p.I302L 0.23 tolerated(0.23) benign(0.012) TCGA-GS-A9TU-01 9 104356778 104356778 C A PPP3R2 Missense_Mutation p.K145N 0.27 deleterious(0.05) benign(0.161) TCGA-GS-A9TU-01 9 134357813 134357813 G A PRRC2B Missense_Mutation p.R1680Q 0.28 tolerated(0.35) probably_damaging(0.997) TCGA-GS-A9TU-01 X 37028612 37028612 G A FAM47C Missense_Mutation p.R710Q 0.09 tolerated(0.39) benign(0.18) TCGA-GS-A9TV-01 10 105362350 105362350 G A SH3PXD2A Silent p.S847S 0.05 TCGA-GS-A9TV-01 10 70405864 70405864 A G TET1 Silent p.K1126K 0.10 TCGA-GS-A9TV-01 11 108093301 108093301 A G NPAT 5'UTR 0.11 TCGA-GS-A9TV-01 11 48346855 48346855 C T OR4C3 Silent p.C121C 0.02 TCGA-GS-A9TV-01 11 59244978 59244978 G C OR4D10 Missense_Mutation p.V26L 0.09 tolerated(0.85) benign(0.001) TCGA-GS-A9TV-01 11 99690305 99690305 C A CNTN5 Missense_Mutation p.T29N 0.04 deleterious_low_confidence(0.01) benign(0.079) TCGA-GS-A9TV-01 12 102158979 102158979 G A GNPTAB Silent p.A572A 0.07 TCGA-GS-A9TV-01 12 117476922 117476922 C T TESC 3'UTR 0.08 TCGA-GS-A9TV-01 12 18841114 18841114 T C PLCZ1 Silent p.S500S 0.07 TCGA-GS-A9TV-01 12 23999110 23999110 T A SOX5 Missense_Mutation p.K96N 0.06 deleterious(0) probably_damaging(0.996) TCGA-GS-A9TV-01 12 29514613 29514613 T C ERGIC2 Silent p.V113V 0.06 TCGA-GS-A9TV-01 12 48596782 48596782 G C OR10AD1 Missense_Mutation p.C98W 0.04 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TV-01 12 57493127 57493127 T C STAT6 Missense_Mutation p.N614S 0.06 tolerated(0.35) probably_damaging(0.964) TCGA-GS-A9TV-01 12 57493137 57493137 G C STAT6 Missense_Mutation p.Q611E 0.05 tolerated(0.16) probably_damaging(0.996) TCGA-GS-A9TV-01 12 72233538 72233538 C A TBC1D15 5'UTR 0.05 TCGA-GS-A9TV-01 13 73357764 73357764 C T PIBF1 Nonsense_Mutation p.R53* 0.04 TCGA-GS-A9TV-01 13 99030138 99030138 C A FARP1 Silent p.T154T 0.04 TCGA-GS-A9TV-01 14 102894692 102894692 A G TECPR2 Missense_Mutation p.S353G 0.04 deleterious(0.03) possibly_damaging(0.507) TCGA-GS-A9TV-01 14 106053976 106053976 C G IGHA2 Missense_Mutation p.Q181H 0.09 deleterious(0) benign(0.01) TCGA-GS-A9TV-01 14 106173709 106173709 G C IGHA1 Missense_Mutation p.S286R 0.02 deleterious(0.01) possibly_damaging(0.736) TCGA-GS-A9TV-01 14 106367009 106367009 G T IGHD6-13 Missense_Mutation p.S4R 0.03 unknown(0) TCGA-GS-A9TV-01 14 21424555 21424555 A T RNASE2 3'UTR 0.05 TCGA-GS-A9TV-01 14 24651277 24651277 C T IPO4 Silent p.V897V 0.10 TCGA-GS-A9TV-01 14 32142594 32142594 T G NUBPL Missense_Mutation p.I139S 0.05 deleterious(0) possibly_damaging(0.501) TCGA-GS-A9TV-01 14 44976159 44976159 A T FSCB Missense_Mutation p.I11K 0.05 tolerated(0.07) benign(0.054) TCGA-GS-A9TV-01 14 63179408 63179408 C T KCNH5 Intron 0.05 TCGA-GS-A9TV-01 14 91883122 91883122 A C CCDC88C Missense_Mutation p.L41V 0.05 deleterious(0) probably_damaging(0.921) TCGA-GS-A9TV-01 15 43027744 43027744 C G CDAN1 Missense_Mutation p.E303Q 0.04 tolerated(0.08) probably_damaging(0.986) TCGA-GS-A9TV-01 15 45003716 45003716 T C B2M 5'UTR 0.07 TCGA-GS-A9TV-01 15 45003779 45003779 T C B2M Missense_Mutation p.L12P 0.07 deleterious(0) possibly_damaging(0.505) TCGA-GS-A9TV-01 15 70976724 70976724 T C UACA Missense_Mutation p.N222D 0.05 deleterious(0.02) probably_damaging(0.995) TCGA-GS-A9TV-01 16 28997712 28997712 G A LAT Silent p.P121P 0.08 TCGA-GS-A9TV-01 17 16229224 16229224 G A PIGL 3'UTR 0.10 TCGA-GS-A9TV-01 17 16722872 16722872 T C AC022596.6 RNA 0.06 TCGA-GS-A9TV-01 17 17163724 17163724 C T COPS3 Missense_Mutation p.R276Q 0.10 tolerated(0.32) benign(0.153) TCGA-GS-A9TV-01 17 2995693 2995693 T C OR1D2 Missense_Mutation p.I200V 0.03 tolerated(0.2) benign(0.012) TCGA-GS-A9TV-01 17 38173276 38173276 A C CSF3 3'UTR 0.11 TCGA-GS-A9TV-01 17 41345167 41345167 A G NBR1 Missense_Mutation p.D377G 0.04 deleterious(0.01) probably_damaging(0.991) TCGA-GS-A9TV-01 17 45360818 45360818 A C ITGB3 Silent p.R88R 0.06 TCGA-GS-A9TV-01 17 48768661 48768661 G A ABCC3 3'UTR 0.09 TCGA-GS-A9TV-01 17 61776176 61776176 G C LIMD2 Missense_Mutation p.H69Q 0.04 deleterious(0.02) possibly_damaging(0.854) TCGA-GS-A9TV-01 17 63010416 63010416 T G GNA13 Missense_Mutation p.T365P 0.04 deleterious(0) probably_damaging(0.996) TCGA-GS-A9TV-01 17 71375659 71375659 G A SDK2 Missense_Mutation p.R1598W 0.08 deleterious(0.03) benign(0.105) TCGA-GS-A9TV-01 17 78320773 78320773 G T RNF213 Missense_Mutation p.G2880C 0.07 probably_damaging(0.999) TCGA-GS-A9TV-01 18 14797834 14797834 C T ANKRD30B Silent p.D670D 0.07 TCGA-GS-A9TV-01 18 23713906 23713906 G A PSMA8 5'UTR 0.12 TCGA-GS-A9TV-01 18 31326209 31326209 C T ASXL3 Missense_Mutation p.P2133S 0.07 probably_damaging(0.998) TCGA-GS-A9TV-01 18 33607213 33607213 C A RPRD1A Missense_Mutation p.V183F 0.03 deleterious(0) possibly_damaging(0.885) TCGA-GS-A9TV-01 19 38189064 38189064 A C ZNF607 Missense_Mutation p.S656R 0.04 tolerated(0.46) benign(0.006) TCGA-GS-A9TV-01 19 41892550 41892550 G T EXOSC5 Nonsense_Mutation p.Y232* 0.09 TCGA-GS-A9TV-01 19 48537542 48537542 G A CABP5 Silent p.L142L 0.07 TCGA-GS-A9TV-01 1 152280084 152280084 G A FLG Silent p.S2426S 0.07 TCGA-GS-A9TV-01 1 152733644 152733644 C G KPRP Missense_Mutation p.A527G 0.07 tolerated_low_confidence(0.42) benign(0.001) TCGA-GS-A9TV-01 1 153741377 153741377 T G INTS3 Missense_Mutation p.D751E 0.04 tolerated(0.07) benign(0.152) TCGA-GS-A9TV-01 1 209796898 209796898 C T LAMB3 Silent p.L770L 0.10 TCGA-GS-A9TV-01 1 216424362 216424362 G T USH2A Missense_Mutation p.Q684K 0.07 benign(0.062) TCGA-GS-A9TV-01 20 52193210 52193210 G A ZNF217 Missense_Mutation p.P698L 0.11 tolerated(0.23) benign(0.012) TCGA-GS-A9TV-01 20 52198348 52198348 T A ZNF217 Missense_Mutation p.S340C 0.09 deleterious(0.02) possibly_damaging(0.606) TCGA-GS-A9TV-01 20 52198483 52198483 T G ZNF217 Missense_Mutation p.T295P 0.07 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TV-01 20 60878686 60878686 A G ADRM1 Missense_Mutation p.K21R 0.16 tolerated(0.15) benign(0.098) TCGA-GS-A9TV-01 20 60878716 60878716 T G ADRM1 Missense_Mutation p.M31R 0.15 deleterious(0) probably_damaging(0.982) TCGA-GS-A9TV-01 20 8352096 8352096 A C PLCB1 Missense_Mutation p.K82T 0.05 deleterious(0) benign(0.011) TCGA-GS-A9TV-01 21 41033531 41033531 C T B3GALT5 3'UTR 0.04 TCGA-GS-A9TV-01 22 23162116 23162116 G C IGLV3-9 Missense_Mutation p.S70T 0.12 tolerated(0.1) benign(0.035) TCGA-GS-A9TV-01 22 23223524 23223524 T C IGLV3-1 Silent p.A98A 0.08 TCGA-GS-A9TV-01 2 109382944 109382944 C T RANBP2 Silent p.Y1983Y 0.04 TCGA-GS-A9TV-01 2 109392255 109392255 T G RANBP2 Missense_Mutation p.V2787G 0.04 tolerated(0.38) benign(0.376) TCGA-GS-A9TV-01 2 15555683 15555683 T A NBAS Missense_Mutation p.H975L 0.03 deleterious(0) benign(0.109) TCGA-GS-A9TV-01 2 157369859 157369859 C T GPD2 Missense_Mutation p.P171L 0.04 deleterious(0.01) probably_damaging(1) TCGA-GS-A9TV-01 2 17696729 17696729 T C RAD51AP2 Missense_Mutation p.N985S 0.03 tolerated(0.06) benign(0.241) TCGA-GS-A9TV-01 2 186671112 186671112 T G FSIP2 Silent p.S5782S 0.04 TCGA-GS-A9TV-01 2 209218719 209218719 A G PIKFYVE Missense_Mutation p.K1981R 0.05 deleterious(0.01) possibly_damaging(0.739) TCGA-GS-A9TV-01 2 231774792 231774792 G A GPR55 Missense_Mutation p.R296C 0.05 deleterious(0.01) probably_damaging(0.98) TCGA-GS-A9TV-01 2 25044408 25044408 G T ADCY3 Missense_Mutation p.F1035L 0.10 deleterious(0) probably_damaging(0.992) TCGA-GS-A9TV-01 2 37035632 37035632 C T VIT Silent p.N469N 0.08 TCGA-GS-A9TV-01 2 44459496 44459496 T C PPM1B 3'Flank 0.05 TCGA-GS-A9TV-01 2 61719472 61719472 C T XPO1 Missense_Mutation p.E571K 0.03 deleterious(0) probably_damaging(1) TCGA-GS-A9TV-01 2 68882188 68882188 G A PROKR1 Nonsense_Mutation p.W221* 0.07 TCGA-GS-A9TV-01 2 88410053 88410053 G A SMYD1 3'UTR 0.06 TCGA-GS-A9TV-01 3 150480409 150480409 C T SIAH2 Silent p.S76S 0.05 TCGA-GS-A9TV-01 3 15269408 15269408 G A CAPN7 Missense_Mutation p.R263Q 0.05 deleterious(0) probably_damaging(1) TCGA-GS-A9TV-01 3 183853228 183853228 C T EIF2B5 Missense_Mutation p.R19C 0.04 deleterious_low_confidence(0.01) unknown(0) TCGA-GS-A9TV-01 3 186507948 186507948 T C RFC4 Missense_Mutation p.I327V 0.08 deleterious(0.02) benign(0.056) TCGA-GS-A9TV-01 3 196281315 196281315 T C WDR53 Missense_Mutation p.T282A 0.05 tolerated(1) benign(0) TCGA-GS-A9TV-01 3 20178459 20178459 A G KAT2B Missense_Mutation p.H592R 0.08 deleterious(0.01) benign(0.312) TCGA-GS-A9TV-01 3 31667478 31667478 A G STT3B Silent p.A644A 0.03 TCGA-GS-A9TV-01 3 9792009 9792009 T G OGG1 Missense_Mutation p.H13Q 0.10 deleterious(0) possibly_damaging(0.875) TCGA-GS-A9TV-01 4 1235269 1235269 G A CTBP1 Intron 0.12 TCGA-GS-A9TV-01 4 187532578 187532578 C T FAT1 Missense_Mutation p.G3272E 0.04 probably_damaging(1) TCGA-GS-A9TV-01 4 38053568 38053568 T C TBC1D1 Intron 0.19 TCGA-GS-A9TV-01 4 8398834 8398834 G T ACOX3 Missense_Mutation p.R296S 0.06 deleterious(0) possibly_damaging(0.818) TCGA-GS-A9TV-01 5 10262700 10262700 T C CCT5 Silent p.C429C 0.07 TCGA-GS-A9TV-01 5 131607911 131607911 G A PDLIM4 Missense_Mutation p.E328K 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GS-A9TV-01 5 140591078 140591078 A C PCDHB12 3'UTR 0.04 TCGA-GS-A9TV-01 5 147813265 147813265 T C FBXO38 Missense_Mutation p.V866A 0.05 deleterious(0.01) probably_damaging(0.985) TCGA-GS-A9TV-01 5 42779602 42779602 A G CCDC152 Missense_Mutation p.E102G 0.03 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TV-01 6 123116916 123116916 T C SMPDL3A Silent p.N69N 0.04 TCGA-GS-A9TV-01 6 31594822 31594822 C T PRRC2A Silent p.N379N 0.05 TCGA-GS-A9TV-01 6 7584037 7584037 T G DSP Missense_Mutation p.V2181G 0.10 possibly_damaging(0.876) TCGA-GS-A9TV-01 6 83849764 83849764 T C DOPEY1 Silent p.T1722T 0.05 TCGA-GS-A9TV-01 7 102937911 102937911 C T PMPCB Missense_Mutation p.A2V 0.09 deleterious_low_confidence(0) unknown(0) TCGA-GS-A9TV-01 7 12683883 12683883 T A SCIN Missense_Mutation p.Y568N 0.05 tolerated(0.3) possibly_damaging(0.876) TCGA-GS-A9TV-01 8 101276899 101276899 C T RNF19A Missense_Mutation p.G436S 0.07 deleterious(0.02) probably_damaging(0.99) TCGA-GS-A9TV-01 8 110406706 110406706 C T PKHD1L1 Missense_Mutation p.T268I 0.03 deleterious(0.02) probably_damaging(0.995) TCGA-GS-A9TV-01 8 128751013 128751013 A T MYC Missense_Mutation p.S184C 0.08 deleterious(0.04) benign(0.016) TCGA-GS-A9TV-01 8 139144902 139144902 A T FAM135B Silent p.A1385A 0.04 TCGA-GS-A9TV-01 8 145618504 145618504 G A CPSF1 3'UTR 0.09 TCGA-GS-A9TV-01 9 104449271 104449271 G A GRIN3A Missense_Mutation p.T304I 0.07 tolerated(0.17) benign(0.031) TCGA-GS-A9TV-01 9 125437806 125437806 T G OR1L3 Missense_Mutation p.V133G 0.04 deleterious(0.04) benign(0.033) TCGA-GS-A9TV-01 9 126164080 126164080 C T DENND1A Intron 0.04 TCGA-GS-A9TV-01 9 35399645 35399645 G T UNC13B Splice_Site p.X1337_splice 0.09 TCGA-GS-A9TV-01 9 71555660 71555660 G A PIP5K1B Missense_Mutation p.V486I 0.05 tolerated_low_confidence(0.72) benign(0.005) TCGA-GS-A9TV-01 9 96318697 96318697 T G FAM120A Missense_Mutation p.S770A 0.09 tolerated(1) benign(0.001) TCGA-GS-A9TV-01 9 97346890 97346890 G C FBP2 Missense_Mutation p.S132C 0.11 deleterious(0) possibly_damaging(0.645) TCGA-GS-A9TV-01 X 102007016 102007016 A C BHLHB9 3'UTR 0.08 TCGA-GS-A9TV-01 X 107037889 107037889 T G NCBP2L Missense_Mutation p.F147V 0.06 tolerated(0.09) benign(0.062) TCGA-GS-A9TV-01 X 107396261 107396261 C T ATG4A Missense_Mutation p.S357L 0.07 tolerated(0.24) benign(0.031) TCGA-GS-A9TV-01 X 11314910 11314910 T A AMELX Missense_Mutation p.H22Q 0.04 tolerated(0.05) probably_damaging(0.985) TCGA-GS-A9TV-01 X 117907928 117907928 T A IL13RA1 Missense_Mutation p.Y366N 0.06 deleterious(0) probably_damaging(0.991) TCGA-GS-A9TV-01 X 129201410 129201410 C T ELF4 Silent p.T426T 0.05 TCGA-GS-A9TV-01 X 12994394 12994394 C G TMSB4X Missense_Mutation p.P5R 0.06 deleterious(0.03) possibly_damaging(0.89) TCGA-GS-A9TV-01 X 135593333 135593333 G A HTATSF1 Missense_Mutation p.E477K 0.07 deleterious_low_confidence(0.04) benign(0.039) TCGA-GS-A9TV-01 X 154221377 154221377 A T F8 Missense_Mutation p.D145E 0.07 deleterious(0.03) probably_damaging(0.99) TCGA-GS-A9TV-01 X 27766417 27766417 A G DCAF8L2 Missense_Mutation p.N469D 0.06 deleterious(0.01) probably_damaging(0.931) TCGA-GS-A9TV-01 X 33146375 33146375 T G DMD Intron 0.06 TCGA-GS-A9TV-01 X 41203552 41203552 C T DDX3X Nonsense_Mutation p.Q309* 0.06 TCGA-GS-A9TV-01 X 41586752 41586752 A C GPR82 Missense_Mutation p.Y158S 0.09 tolerated(0.41) benign(0.187) TCGA-GS-A9TV-01 X 41586775 41586775 A G GPR82 Missense_Mutation p.I166V 0.08 tolerated(0.49) benign(0.004) TCGA-GS-A9TV-01 X 47045745 47045745 G A RBM10 Missense_Mutation p.G876S 0.07 deleterious(0) probably_damaging(1) TCGA-GS-A9TV-01 X 63412763 63412763 C A AMER1 Missense_Mutation p.G135V 0.08 tolerated(0.56) benign(0.266) TCGA-GS-A9TV-01 X 70316317 70316317 G C FOXO4 5'UTR 0.05 TCGA-GS-A9TV-01 X 76907651 76907651 G A ATRX Nonsense_Mutation p.R1504* 0.06 TCGA-GS-A9TW-01 10 104679341 104679341 C T CNNM2 Silent p.G368G 0.12 TCGA-GS-A9TW-01 10 105233191 105233191 C T CALHM3 Missense_Mutation p.A272T 0.09 tolerated(0.53) benign(0.02) TCGA-GS-A9TW-01 10 127429569 127429569 G A EDRF1 Splice_Site p.X724_splice 0.24 TCGA-GS-A9TW-01 10 13167997 13167997 T G OPTN Missense_Mutation p.H400Q 0.15 deleterious(0.01) possibly_damaging(0.602) TCGA-GS-A9TW-01 10 14893270 14893270 T C HSPA14 Missense_Mutation p.S174P 0.15 deleterious(0.02) possibly_damaging(0.757) TCGA-GS-A9TW-01 10 21309114 21309114 A G NEBL Missense_Mutation p.S27P 0.28 deleterious(0.03) benign(0.033) TCGA-GS-A9TW-01 10 27044592 27044592 T C ABI1 Missense_Mutation p.Q386R 0.24 deleterious(0) probably_damaging(0.985) TCGA-GS-A9TW-01 10 46969295 46969295 G A SYT15 Nonsense_Mutation p.Q56* 0.10 TCGA-GS-A9TW-01 10 5952920 5952920 T C FBXO18 Missense_Mutation p.L398P 0.09 deleterious(0.02) possibly_damaging(0.894) TCGA-GS-A9TW-01 10 64967691 64967691 T A JMJD1C Missense_Mutation p.E1246D 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-GS-A9TW-01 10 696342 696342 C A PRR26 Silent p.T60T 0.33 TCGA-GS-A9TW-01 10 70998835 70998835 G A HKDC1 Missense_Mutation p.R178Q 0.33 deleterious(0.01) possibly_damaging(0.633) TCGA-GS-A9TW-01 10 72633215 72633215 C T SGPL1 Silent p.S389S 0.11 TCGA-GS-A9TW-01 10 75608359 75608359 C T CAMK2G Missense_Mutation p.G176S 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-GS-A9TW-01 10 87898678 87898678 G A GRID1 Silent p.L208L 0.18 TCGA-GS-A9TW-01 10 95994010 95994010 G A PLCE1 Missense_Mutation p.G719S 0.30 tolerated(0.21) probably_damaging(0.954) TCGA-GS-A9TW-01 10 97698332 97698332 A G C10orf131 3'UTR 0.10 TCGA-GS-A9TW-01 11 109294503 109294503 G A C11orf87 Silent p.T48T 0.16 TCGA-GS-A9TW-01 11 111636062 111636062 A C PPP2R1B Missense_Mutation p.L54R 0.12 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 11 118772480 118772480 G A BCL9L Missense_Mutation p.P658S 0.24 possibly_damaging(0.626) TCGA-GS-A9TW-01 11 124748633 124748633 C T ROBO3 Silent p.P1158P 0.36 TCGA-GS-A9TW-01 11 1298427 1298427 C T TOLLIP Missense_Mutation p.V223M 0.11 tolerated(0.15) benign(0.011) TCGA-GS-A9TW-01 11 1502024 1502024 C T MOB2 Missense_Mutation p.D68N 0.11 deleterious(0.04) probably_damaging(0.958) TCGA-GS-A9TW-01 11 26538445 26538445 A C ANO3 Silent p.A221A 0.30 TCGA-GS-A9TW-01 11 3752747 3752747 A C NUP98 Missense_Mutation p.L535R 0.08 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 11 46760974 46760974 C T F2 3'UTR 0.11 TCGA-GS-A9TW-01 11 5968801 5968801 C G OR56A3 Missense_Mutation p.I75M 0.39 tolerated(0.76) benign(0.046) TCGA-GS-A9TW-01 11 64597709 64597709 A G CDC42BPG Silent p.L1108L 0.14 TCGA-GS-A9TW-01 11 6567484 6567484 G A DNHD1 Missense_Mutation p.R1772Q 0.49 benign(0.012) TCGA-GS-A9TW-01 11 6629314 6629314 G A ILK Missense_Mutation p.R43Q 0.14 tolerated(0.08) benign(0.053) TCGA-GS-A9TW-01 11 9761816 9761816 A G SWAP70 Missense_Mutation p.Y426C 0.36 tolerated(0.05) probably_damaging(0.999) TCGA-GS-A9TW-01 12 1006762 1006762 A G WNK1 Silent p.S2121S 0.12 TCGA-GS-A9TW-01 12 10278006 10278006 C A CLEC7A Nonsense_Mutation p.E128* 0.36 TCGA-GS-A9TW-01 12 104186994 104186994 C A NT5DC3 Missense_Mutation p.D323Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 12 104517174 104517174 G A NFYB Nonsense_Mutation p.Q87* 0.26 TCGA-GS-A9TW-01 12 107713064 107713064 C T BTBD11 Missense_Mutation p.A116V 0.08 tolerated(0.51) unknown(0) TCGA-GS-A9TW-01 12 11508468 11508468 G T PRB1 Nonsense_Mutation p.S7* 0.19 TCGA-GS-A9TW-01 12 122962423 122962423 G A ZCCHC8 Missense_Mutation p.S437L 0.25 tolerated(0.21) benign(0.002) TCGA-GS-A9TW-01 12 123107092 123107092 G A KNTC1 Silent p.K2151K 0.29 TCGA-GS-A9TW-01 12 124272402 124272402 C T DNAH10 Silent p.L430L 0.18 TCGA-GS-A9TW-01 12 124359986 124359986 C T DNAH10 Missense_Mutation p.S2598L 0.26 possibly_damaging(0.862) TCGA-GS-A9TW-01 12 12653527 12653527 G C DUSP16 Missense_Mutation p.P153A 0.33 deleterious(0.03) benign(0.209) TCGA-GS-A9TW-01 12 132511991 132511991 C T EP400 Missense_Mutation p.P1675L 0.07 unknown(0) TCGA-GS-A9TW-01 12 13717016 13717016 G A GRIN2B Silent p.H1052H 0.15 TCGA-GS-A9TW-01 12 14923847 14923847 C G HIST4H4 Missense_Mutation p.V58L 0.14 deleterious(0.01) benign(0.253) TCGA-GS-A9TW-01 12 1703036 1703036 T C FBXL14 Missense_Mutation p.Q66R 0.10 tolerated(0.66) benign(0.005) TCGA-GS-A9TW-01 12 54339026 54339026 C T HOXC13 Missense_Mutation p.L327F 0.29 deleterious_low_confidence(0.02) benign(0.386) TCGA-GS-A9TW-01 12 54757535 54757535 C G GPR84 Missense_Mutation p.G34A 0.14 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 12 54963009 54963009 C T PDE1B Missense_Mutation p.S90L 0.47 deleterious(0.02) probably_damaging(0.995) TCGA-GS-A9TW-01 12 56415193 56415193 C T IKZF4 Intron 0.28 TCGA-GS-A9TW-01 12 58197374 58197374 C A AVIL Nonsense_Mutation p.E584* 0.21 TCGA-GS-A9TW-01 12 6140736 6140736 G A VWF Silent p.C898C 0.11 TCGA-GS-A9TW-01 12 7016547 7016547 C T LRRC23 Missense_Mutation p.R187W 0.31 deleterious(0) probably_damaging(0.988) TCGA-GS-A9TW-01 12 71092083 71092083 C T PTPRR Missense_Mutation p.R414H 0.29 deleterious(0.01) benign(0.042) TCGA-GS-A9TW-01 12 72038798 72038798 G A ZFC3H1 Nonsense_Mutation p.Q380* 0.31 TCGA-GS-A9TW-01 12 85449643 85449643 A - LRRIQ1 Frame_Shift_Del p.R359Gfs*13 0.17 TCGA-GS-A9TW-01 12 85677538 85677538 T G ALX1 Missense_Mutation p.F139V 0.23 deleterious(0) possibly_damaging(0.864) TCGA-GS-A9TW-01 12 94543038 94543038 G A PLXNC1 Silent p.A97A 0.29 TCGA-GS-A9TW-01 13 25672209 25672209 G A PABPC3 Missense_Mutation p.A625T 0.42 tolerated_low_confidence(0.19) benign(0.001) TCGA-GS-A9TW-01 13 36428729 36428729 A G DCLK1 Silent p.V314V 0.25 TCGA-GS-A9TW-01 13 37269776 37269776 G A SERTM1 3'UTR 0.13 TCGA-GS-A9TW-01 13 39262600 39262600 C T FREM2 Silent p.T373T 0.21 TCGA-GS-A9TW-01 13 45965590 45965590 G A SLC25A30 3'Flank 0.50 TCGA-GS-A9TW-01 13 77754319 77754319 G T MYCBP2 Silent p.T1654T 0.29 TCGA-GS-A9TW-01 13 88328058 88328058 A C SLITRK5 Missense_Mutation p.N139H 0.20 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 13 99537291 99537291 C T DOCK9 Silent p.Q772Q 0.10 TCGA-GS-A9TW-01 13 99948277 99948277 G C GPR183 Silent p.V41V 0.23 TCGA-GS-A9TW-01 14 100795800 100795800 G A SLC25A47 Missense_Mutation p.G249R 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-GS-A9TW-01 14 101348390 101348390 A G RTL1 Silent p.P912P 0.08 TCGA-GS-A9TW-01 14 21360199 21360199 G A RNASE3 Silent p.Q118Q 0.32 TCGA-GS-A9TW-01 14 31598245 31598253 GGAAGATGA AGCTTGT HECTD1 Frame_Shift_Del p.S1442Tfs*3 0.14 TCGA-GS-A9TW-01 14 35872426 35872426 G A NFKBIA Silent p.S159S 0.39 TCGA-GS-A9TW-01 14 45693171 45693171 A G MIS18BP1 Silent p.G873G 0.29 TCGA-GS-A9TW-01 14 47120688 47120688 G C RPL10L Silent p.G84G 0.30 TCGA-GS-A9TW-01 14 50808859 50808859 G A CDKL1 Missense_Mutation p.R150W 0.33 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 14 51348331 51348331 T G ABHD12B Missense_Mutation p.L158R 0.25 deleterious(0) probably_damaging(0.912) TCGA-GS-A9TW-01 14 61446275 61446275 T C TRMT5 Missense_Mutation p.K114R 0.12 tolerated(0.1) benign(0.015) TCGA-GS-A9TW-01 14 72152170 72152172 AAC - SIPA1L1 In_Frame_Del p.N1066del 0.31 TCGA-GS-A9TW-01 14 90650648 90650648 G A KCNK13 Silent p.L176L 0.29 TCGA-GS-A9TW-01 14 95669869 95669869 C G CLMN Missense_Mutation p.G606A 0.33 deleterious_low_confidence(0) possibly_damaging(0.706) TCGA-GS-A9TW-01 15 101152374 101152374 G C ASB7 5'UTR 0.34 TCGA-GS-A9TW-01 15 101592118 101592118 G A LRRK1 Silent p.P1214P 0.33 TCGA-GS-A9TW-01 15 28408264 28408264 G A HERC2 Silent p.S3574S 0.25 TCGA-GS-A9TW-01 15 34396402 34396402 A G PGBD4 Missense_Mutation p.K557R 0.30 tolerated(0.87) benign(0.305) TCGA-GS-A9TW-01 15 41063521 41063521 G A C15orf62 3'UTR 0.34 TCGA-GS-A9TW-01 15 42704237 42704237 G A CAPN3 3'UTR 0.45 TCGA-GS-A9TW-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.18 TCGA-GS-A9TW-01 15 70961075 70961076 - T UACA Frame_Shift_Ins p.L650Ifs*9 0.29 TCGA-GS-A9TW-01 15 73848720 73848720 G A C15orf60 Silent p.T208T 0.20 TCGA-GS-A9TW-01 15 75108518 75108518 G A LMAN1L Missense_Mutation p.E66K 0.46 deleterious(0) probably_damaging(0.942) TCGA-GS-A9TW-01 15 79749276 79749276 G A KIAA1024 Missense_Mutation p.D263N 0.14 tolerated(0.06) benign(0.04) TCGA-GS-A9TW-01 15 89694933 89694933 A G ABHD2 Missense_Mutation p.K74E 0.36 tolerated(0.17) benign(0.185) TCGA-GS-A9TW-01 15 96877601 96877615 CTCACCTGGAGCGAG - NR2F2 In_Frame_Del p.T248_L252del 0.24 TCGA-GS-A9TW-01 16 10971160 10971160 G T CIITA 5'UTR 0.34 TCGA-GS-A9TW-01 16 11348854 11348854 A G SOCS1 Missense_Mutation p.M161T 0.12 tolerated(0.22) benign(0.01) TCGA-GS-A9TW-01 16 11349038 11349040 TGC A SOCS1 Frame_Shift_Del p.G99Vfs*17 0.55 TCGA-GS-A9TW-01 16 11850203 11850203 C T ZC3H7A Missense_Mutation p.E818K 0.27 deleterious(0.01) possibly_damaging(0.802) TCGA-GS-A9TW-01 16 1268451 1268451 C T CACNA1H Missense_Mutation p.A1896V 0.40 tolerated(0.12) benign(0.003) TCGA-GS-A9TW-01 16 2106755 2106755 C T TSC2 Silent p.C253C 0.11 TCGA-GS-A9TW-01 16 21964738 21964738 T A UQCRC2 5'UTR 0.40 TCGA-GS-A9TW-01 16 2313121 2313121 T C RNPS1 Missense_Mutation p.D132G 0.12 deleterious(0.02) unknown(0) TCGA-GS-A9TW-01 16 24804956 24804956 C A TNRC6A Missense_Mutation p.A1113E 0.28 deleterious(0.01) benign(0.16) TCGA-GS-A9TW-01 16 28962525 28962525 C T NFATC2IP Missense_Mutation p.R65C 0.14 tolerated_low_confidence(0.18) benign(0.002) TCGA-GS-A9TW-01 16 3433530 3433530 A G ZSCAN32 Silent p.S260S 0.19 TCGA-GS-A9TW-01 16 50707833 50707833 C T SNX20 Silent p.L145L 0.11 TCGA-GS-A9TW-01 16 57416809 57416809 C G CX3CL1 Missense_Mutation p.F353L 0.28 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TW-01 16 67314406 67314406 T C PLEKHG4 Silent p.L153L 0.11 TCGA-GS-A9TW-01 16 67325675 67325675 T C KCTD19 Missense_Mutation p.K762E 0.24 deleterious(0) benign(0.341) TCGA-GS-A9TW-01 16 745955 745955 C T FBXL16 Intron 0.10 TCGA-GS-A9TW-01 16 77822519 77822520 - C VAT1L 5'UTR 0.21 TCGA-GS-A9TW-01 16 816731 816731 A G MSLN Missense_Mutation p.T440A 0.23 tolerated(1) benign(0.002) TCGA-GS-A9TW-01 16 87364858 87364858 G A FBXO31 3'UTR 0.17 TCGA-GS-A9TW-01 16 88039846 88039846 C T BANP Silent p.V202V 0.24 TCGA-GS-A9TW-01 16 89043112 89043112 G A CBFA2T3 Missense_Mutation p.A35V 0.37 deleterious_low_confidence(0.02) benign(0.001) TCGA-GS-A9TW-01 16 89865328 89865328 G A FANCA Intron 0.37 TCGA-GS-A9TW-01 17 16285294 16285294 A T UBB Missense_Mutation p.N25Y 0.21 deleterious(0) benign(0.219) TCGA-GS-A9TW-01 17 2371109 2371109 G C METTL16 Missense_Mutation p.I177M 0.20 tolerated(0.08) benign(0.409) TCGA-GS-A9TW-01 17 27248804 27248804 C G PHF12 Missense_Mutation p.K246N 0.32 deleterious(0.01) benign(0.397) TCGA-GS-A9TW-01 17 29130952 29130952 C T CRLF3 Missense_Mutation p.G102R 0.34 deleterious(0) probably_damaging(0.996) TCGA-GS-A9TW-01 17 2929669 2929669 G A RAP1GAP2 Missense_Mutation p.G631S 0.19 tolerated(0.43) benign(0.027) TCGA-GS-A9TW-01 17 30349793 30349793 G A LRRC37B Missense_Mutation p.R543H 0.12 tolerated(0.94) benign(0) TCGA-GS-A9TW-01 17 3194974 3194974 C G OR3A1 Missense_Mutation p.Q301H 0.07 deleterious(0.02) benign(0.048) TCGA-GS-A9TW-01 17 33289921 33289921 A C ZNF830 3'UTR 0.27 TCGA-GS-A9TW-01 17 34079849 34079849 G A GAS2L2 Silent p.G7G 0.15 TCGA-GS-A9TW-01 17 36955637 36955637 G A PIP4K2B Missense_Mutation p.A14V 0.17 tolerated(0.13) benign(0.001) TCGA-GS-A9TW-01 17 38249648 38249648 G A THRA 3'UTR 0.42 TCGA-GS-A9TW-01 17 40128785 40128785 G C DNAJC7 Missense_Mutation p.S484C 0.35 deleterious(0.01) possibly_damaging(0.619) TCGA-GS-A9TW-01 17 45018030 45018030 G A GOSR2 3'UTR 0.17 TCGA-GS-A9TW-01 17 46114216 46114216 C T COPZ2 Splice_Site p.X60_splice 0.12 TCGA-GS-A9TW-01 17 46799788 46799788 C G PRAC1 5'UTR 0.35 TCGA-GS-A9TW-01 17 46970803 46970803 C A ATP5G1 Missense_Mutation p.F8L 0.28 tolerated_low_confidence(1) benign(0) TCGA-GS-A9TW-01 17 54969281 54969281 A T TRIM25 Missense_Mutation p.I558N 0.36 deleterious(0) probably_damaging(0.977) TCGA-GS-A9TW-01 17 57917290 57917290 C T VMP1 3'UTR 0.38 TCGA-GS-A9TW-01 17 58034594 58034594 G A RNFT1 Silent p.L332L 0.41 TCGA-GS-A9TW-01 17 60501268 60501268 C T METTL2A Missense_Mutation p.A2V 0.09 deleterious_low_confidence(0.01) benign(0.073) TCGA-GS-A9TW-01 17 61776712 61776712 C T LIMD2 Intron 0.08 TCGA-GS-A9TW-01 17 62750691 62750691 C T hsa-mir-6080 RNA 0.33 TCGA-GS-A9TW-01 17 648463 648463 G C GEMIN4 Silent p.V940V 0.35 TCGA-GS-A9TW-01 17 6597506 6597506 C T SLC13A5 Missense_Mutation p.D356N 0.11 deleterious(0) probably_damaging(0.978) TCGA-GS-A9TW-01 17 72846900 72846900 G A GRIN2C Missense_Mutation p.R374C 0.30 deleterious(0.01) possibly_damaging(0.856) TCGA-GS-A9TW-01 17 73752673 73752673 G A ITGB4 Silent p.P1624P 0.11 TCGA-GS-A9TW-01 17 76167080 76167080 G C SYNGR2 Missense_Mutation p.Q94H 0.16 deleterious(0.01) benign(0.075) TCGA-GS-A9TW-01 17 7793998 7793998 G A CHD3 Missense_Mutation p.R167Q 0.22 benign(0.238) TCGA-GS-A9TW-01 17 79495611 79495611 C T FSCN2 Silent p.N18N 0.15 TCGA-GS-A9TW-01 18 19231442 19231442 C G ABHD3 3'UTR 0.13 TCGA-GS-A9TW-01 18 25563042 25563042 C A CDH2 Missense_Mutation p.V739L 0.11 tolerated(0.53) probably_damaging(0.994) TCGA-GS-A9TW-01 18 31325061 31325061 T A ASXL3 Missense_Mutation p.V1750E 0.12 probably_damaging(0.999) TCGA-GS-A9TW-01 18 43307079 43307079 C T SLC14A1 5'UTR 0.55 TCGA-GS-A9TW-01 18 51904570 51904570 G C C18orf54 Missense_Mutation p.R358T 0.23 deleterious(0.01) benign(0.402) TCGA-GS-A9TW-01 18 649834 649834 A G C18orf56 3'UTR 0.26 TCGA-GS-A9TW-01 18 697244 697244 C A ENOSF1 Missense_Mutation p.R123I 0.35 deleterious(0) probably_damaging(0.969) TCGA-GS-A9TW-01 18 743032 743032 C T YES1 Missense_Mutation p.A316T 0.08 deleterious(0.01) possibly_damaging(0.49) TCGA-GS-A9TW-01 19 10418947 10418947 G A ZGLP1 Silent p.T137T 0.10 TCGA-GS-A9TW-01 19 11979140 11979140 T C ZNF439 Missense_Mutation p.F419S 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-GS-A9TW-01 19 12949406 12949406 C G MAST1 Missense_Mutation p.T7S 0.12 tolerated_low_confidence(0.27) benign(0.001) TCGA-GS-A9TW-01 19 1357062 1357062 C G MUM1 Missense_Mutation p.L39V 0.29 deleterious(0.02) possibly_damaging(0.789) TCGA-GS-A9TW-01 19 15072689 15072689 G A SLC1A6 Intron 0.31 TCGA-GS-A9TW-01 19 17316087 17316087 G A MYO9B Missense_Mutation p.C1669Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 19 17756852 17756852 C T UNC13A Missense_Mutation p.V705I 0.11 tolerated(0.1) probably_damaging(0.992) TCGA-GS-A9TW-01 19 21477347 21477347 G A ZNF708 Nonsense_Mutation p.Q141* 0.14 TCGA-GS-A9TW-01 19 2207577 2207577 C T DOT1L Silent p.I287I 0.12 TCGA-GS-A9TW-01 19 2418090 2418090 G A TMPRSS9 Missense_Mutation p.R669H 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-GS-A9TW-01 19 36218067 36218067 C T KMT2B Silent p.C1338C 0.27 TCGA-GS-A9TW-01 19 3825330 3825331 - G ZFR2 Frame_Shift_Ins p.G371Rfs*38 0.18 TCGA-GS-A9TW-01 19 3933578 3933578 A G NMRK2 5'UTR 0.10 TCGA-GS-A9TW-01 19 41019117 41019117 C A SPTBN4 Silent p.S807S 0.33 TCGA-GS-A9TW-01 19 41223942 41223942 G A ITPKC Missense_Mutation p.G301D 0.08 tolerated_low_confidence(0.2) benign(0.016) TCGA-GS-A9TW-01 19 42400465 42400465 T C ARHGEF1 Missense_Mutation p.L359P 0.08 tolerated(0.32) benign(0.002) TCGA-GS-A9TW-01 19 42479900 42479900 A G ATP1A3 Missense_Mutation p.L728P 0.09 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 19 4333777 4333777 G C STAP2 Missense_Mutation p.L71V 0.24 tolerated(0.17) benign(0.329) TCGA-GS-A9TW-01 19 43965439 43965439 G A LYPD3 3'UTR 0.24 TCGA-GS-A9TW-01 19 45515491 45515491 G C RELB Missense_Mutation p.G154A 0.25 deleterious(0) possibly_damaging(0.712) TCGA-GS-A9TW-01 19 46000114 46000114 G A RTN2 5'UTR 0.10 TCGA-GS-A9TW-01 19 47127253 47127253 C T PTGIR Missense_Mutation p.R77H 0.16 tolerated(0.12) benign(0.198) TCGA-GS-A9TW-01 19 49232532 49232532 T A RASIP1 Missense_Mutation p.R499W 0.09 tolerated(0.06) benign(0.003) TCGA-GS-A9TW-01 19 49714944 49714944 C A TRPM4 3'UTR 0.16 TCGA-GS-A9TW-01 19 50119263 50119263 G A PRR12 Missense_Mutation p.G1762R 0.11 unknown(0) TCGA-GS-A9TW-01 19 50412090 50412090 G A NUP62 Silent p.S325S 0.34 TCGA-GS-A9TW-01 19 53573446 53573446 T C ZNF160 Missense_Mutation p.H114R 0.15 tolerated(0.06) benign(0.001) TCGA-GS-A9TW-01 19 56156705 56156705 G A ZNF581 3'UTR 0.22 TCGA-GS-A9TW-01 19 57065996 57065996 G A ZFP28 Silent p.E614E 0.27 TCGA-GS-A9TW-01 19 57325865 57325866 AT G PEG3 Frame_Shift_Del p.Y1315Sfs*69 0.19 TCGA-GS-A9TW-01 19 7976212 7976212 G A MAP2K7 Silent p.S311S 0.13 TCGA-GS-A9TW-01 19 9524292 9524292 C G ZNF266 Missense_Mutation p.E437Q 0.34 tolerated(0.12) possibly_damaging(0.665) TCGA-GS-A9TW-01 19 9720870 9720870 G A ZNF561 3'UTR 0.21 TCGA-GS-A9TW-01 1 11115065 11115065 G C SRM Missense_Mutation p.S281C 0.16 deleterious(0) possibly_damaging(0.731) TCGA-GS-A9TW-01 1 111890313 111890313 C T PIFO Silent p.Y59Y 0.31 TCGA-GS-A9TW-01 1 1146904 1146904 G A TNFRSF4 3'UTR 0.23 TCGA-GS-A9TW-01 1 117311247 117311247 C T CD2 Missense_Mutation p.P300S 0.25 tolerated(0.07) probably_damaging(0.985) TCGA-GS-A9TW-01 1 149857694 149857694 T A HIST2H2BE 3'UTR 0.24 TCGA-GS-A9TW-01 1 154179851 154179851 G A C1orf43 3'UTR 0.24 TCGA-GS-A9TW-01 1 15771170 15771170 G A CTRC Missense_Mutation p.R188K 0.10 tolerated(0.59) benign(0.004) TCGA-GS-A9TW-01 1 158226646 158226646 C G CD1A Silent p.V225V 0.29 TCGA-GS-A9TW-01 1 158614070 158614070 G A SPTA1 Silent p.D1437D 0.12 TCGA-GS-A9TW-01 1 158622386 158622386 A T SPTA1 Nonsense_Mutation p.Y1082* 0.14 TCGA-GS-A9TW-01 1 16101496 16101496 G A FBLIM1 Silent p.T365T 0.32 TCGA-GS-A9TW-01 1 161298187 161298187 G A SDHC Missense_Mutation p.A27T 0.30 tolerated(0.11) benign(0.021) TCGA-GS-A9TW-01 1 166958593 166958593 C T MAEL Missense_Mutation p.P2S 0.10 tolerated(0.14) probably_damaging(0.974) TCGA-GS-A9TW-01 1 16736100 16736100 C T SPATA21 Missense_Mutation p.A195T 0.08 tolerated(0.24) benign(0.025) TCGA-GS-A9TW-01 1 16748574 16748574 G A SPATA21 Intron 0.09 TCGA-GS-A9TW-01 1 169677562 169677562 G A SELL Silent p.Y169Y 0.28 TCGA-GS-A9TW-01 1 169821960 169821960 C A C1orf112 Missense_Mutation p.F798L 0.25 tolerated(0.74) benign(0.001) TCGA-GS-A9TW-01 1 169831801 169831801 C T SCYL3 Missense_Mutation p.V365M 0.29 deleterious(0.01) benign(0.426) TCGA-GS-A9TW-01 1 173579131 173579131 A C ANKRD45 3'UTR 0.22 TCGA-GS-A9TW-01 1 181767695 181767695 T C CACNA1E Missense_Mutation p.S2223P 0.08 tolerated(0.76) possibly_damaging(0.775) TCGA-GS-A9TW-01 1 182640795 182640795 C A RGS8 Missense_Mutation p.R26I 0.32 deleterious(0.03) possibly_damaging(0.6) TCGA-GS-A9TW-01 1 185953339 185953339 G A HMCN1 Silent p.G943G 0.18 TCGA-GS-A9TW-01 1 186313566 186313566 C T TPR Missense_Mutation p.A1120T 0.13 possibly_damaging(0.787) TCGA-GS-A9TW-01 1 192548531 192548531 G A RGS1 3'UTR 0.32 TCGA-GS-A9TW-01 1 19559222 19559222 A T EMC1 Missense_Mutation p.Y560N 0.26 deleterious(0.03) probably_damaging(0.99) TCGA-GS-A9TW-01 1 198685901 198685901 C T PTPRC Missense_Mutation p.A461V 0.31 deleterious(0.04) probably_damaging(0.984) TCGA-GS-A9TW-01 1 200708880 200708880 C T CAMSAP2 5'UTR 0.19 TCGA-GS-A9TW-01 1 20249225 20249225 C A PLA2G2E Missense_Mutation p.V22F 0.33 deleterious(0.03) benign(0.052) TCGA-GS-A9TW-01 1 20975644 20975644 C T PINK1 Nonsense_Mutation p.Q470* 0.27 TCGA-GS-A9TW-01 1 212119959 212119959 G C INTS7 Missense_Mutation p.T802S 0.29 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 1 21800048 21800048 G A NBPF3 Missense_Mutation p.E304K 0.31 tolerated(0.23) possibly_damaging(0.636) TCGA-GS-A9TW-01 1 223900342 223900342 C T CAPN2 5'UTR 0.29 TCGA-GS-A9TW-01 1 225702562 225702562 T G ENAH Silent p.P318P 0.15 TCGA-GS-A9TW-01 1 226924346 226924346 C T ITPKB Missense_Mutation p.A272T 0.37 tolerated_low_confidence(0.25) benign(0.016) TCGA-GS-A9TW-01 1 226924770 226924770 C T ITPKB Silent p.K130K 0.33 TCGA-GS-A9TW-01 1 22838349 22838349 C T ZBTB40 Missense_Mutation p.S728F 0.31 deleterious(0.02) benign(0.184) TCGA-GS-A9TW-01 1 228471339 228471339 C T OBSCN Missense_Mutation p.S3387L 0.28 possibly_damaging(0.699) TCGA-GS-A9TW-01 1 240371617 240371617 C G FMN2 Missense_Mutation p.P1169A 0.12 unknown(0) TCGA-GS-A9TW-01 1 248616329 248616329 C A OR2T2 Silent p.I77I 0.11 TCGA-GS-A9TW-01 1 248802329 248802329 G T OR2T35 Silent p.I77I 0.26 TCGA-GS-A9TW-01 1 25256143 25256143 T A RUNX3 Missense_Mutation p.N87Y 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-GS-A9TW-01 1 26601519 26601519 G T CEP85 Missense_Mutation p.R620L 0.33 tolerated(0.06) possibly_damaging(0.573) TCGA-GS-A9TW-01 1 29644369 29644369 G A PTPRU Missense_Mutation p.C1218Y 0.13 deleterious(0) probably_damaging(0.934) TCGA-GS-A9TW-01 1 32672879 32672879 G A IQCC Silent p.A279A 0.40 TCGA-GS-A9TW-01 1 32740552 32740552 C T LCK Intron 0.29 TCGA-GS-A9TW-01 1 32801692 32801692 G C MARCKSL1 5'UTR 0.27 TCGA-GS-A9TW-01 1 33960285 33960285 C T ZSCAN20 Missense_Mutation p.L781F 0.36 tolerated(0.29) probably_damaging(0.999) TCGA-GS-A9TW-01 1 3732044 3732044 C G CEP104 Silent p.G900G 0.11 TCGA-GS-A9TW-01 1 55549034 55549034 C T USP24 Missense_Mutation p.G2296R 0.13 tolerated(0.07) benign(0.005) TCGA-GS-A9TW-01 1 55587126 55587126 C T USP24 Missense_Mutation p.G1444R 0.24 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TW-01 1 66101961 66101961 G A LEPR Missense_Mutation p.D921N 0.17 deleterious(0) probably_damaging(0.963) TCGA-GS-A9TW-01 1 6662556 6662556 G A KLHL21 Missense_Mutation p.P108S 0.13 tolerated(0.4) benign(0.085) TCGA-GS-A9TW-01 1 67133217 67133217 G A SGIP1 Missense_Mutation p.R159H 0.15 tolerated(0.2) probably_damaging(0.976) TCGA-GS-A9TW-01 1 9662327 9662327 G A TMEM201 Missense_Mutation p.R386Q 0.31 deleterious(0) possibly_damaging(0.879) TCGA-GS-A9TW-01 1 98187169 98187169 C T DPYD Missense_Mutation p.G127E 0.33 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 20 11899166 11899166 G A BTBD3 Silent p.Q81Q 0.09 TCGA-GS-A9TW-01 20 3627585 3627585 C T ATRN 3'UTR 0.48 TCGA-GS-A9TW-01 20 36888929 36888929 C T KIAA1755 5'UTR 0.08 TCGA-GS-A9TW-01 20 37356863 37356863 G A SLC32A1 Missense_Mutation p.V387M 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-GS-A9TW-01 20 39794309 39794309 G A PLCG1 Missense_Mutation p.E548K 0.17 deleterious(0) possibly_damaging(0.546) TCGA-GS-A9TW-01 20 42935773 42935773 A G FITM2 Missense_Mutation p.L94P 0.08 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TW-01 20 52198236 52198236 C T ZNF217 Missense_Mutation p.C377Y 0.38 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 20 53260114 53260114 C T DOK5 Nonsense_Mutation p.Q285* 0.28 TCGA-GS-A9TW-01 20 60909029 60909029 T C LAMA5 Missense_Mutation p.N936D 0.37 probably_damaging(0.994) TCGA-GS-A9TW-01 20 62494183 62494183 G C ABHD16B Silent p.L430L 0.13 TCGA-GS-A9TW-01 20 62680186 62680186 C T SOX18 Missense_Mutation p.R163H 0.11 deleterious(0) possibly_damaging(0.522) TCGA-GS-A9TW-01 21 11029692 11029692 A C BAGE2 RNA 0.08 TCGA-GS-A9TW-01 21 22881300 22881306 ACTAGGA CACTAG NCAM2 Nonsense_Mutation p.T736Hfs*2 0.15 TCGA-GS-A9TW-01 21 38520899 38520899 T C TTC3 Silent p.N690N 0.25 TCGA-GS-A9TW-01 21 41648055 41648055 G A DSCAM Silent p.D775D 0.36 TCGA-GS-A9TW-01 21 42080591 42080591 G T DSCAM Silent p.G50G 0.16 TCGA-GS-A9TW-01 21 43547122 43547122 C T UMODL1 Silent p.Y1228Y 0.31 TCGA-GS-A9TW-01 21 44513272 44513272 G A U2AF1 Silent p.G221G 0.28 TCGA-GS-A9TW-01 21 46355747 46355748 TC - C21orf67 Frame_Shift_Del p.D42Pfs*13 0.33 TCGA-GS-A9TW-01 22 19029399 19029399 G A DGCR2 Silent p.I360I 0.32 TCGA-GS-A9TW-01 22 21133944 21133944 A - SERPIND1 Frame_Shift_Del p.Q115Rfs*27 0.22 TCGA-GS-A9TW-01 22 23029557 23029557 G C IGLV3-25 Missense_Mutation p.W53C 0.30 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 22 23230124 23230124 T A IGLL5 5'UTR 0.50 TCGA-GS-A9TW-01 22 23248832 23248832 G A IGLC3 3'UTR 0.24 TCGA-GS-A9TW-01 22 29130418 29130419 - AT CHEK2 Frame_Shift_Ins p.A98Mfs*40 0.19 TCGA-GS-A9TW-01 22 29191604 29191604 A C XBP1 Missense_Mutation p.V239G 0.27 deleterious(0) possibly_damaging(0.763) TCGA-GS-A9TW-01 22 36886232 36886232 C G FOXRED2 Silent p.V626V 0.29 TCGA-GS-A9TW-01 22 37485626 37485626 G A TMPRSS6 Silent p.L285L 0.29 TCGA-GS-A9TW-01 22 38270414 38270414 C A EIF3L Missense_Mutation p.H263Q 0.31 tolerated(0.26) benign(0.411) TCGA-GS-A9TW-01 22 42322141 42322141 C T TNFRSF13C Missense_Mutation p.A111T 0.10 tolerated(0.4) benign(0.086) TCGA-GS-A9TW-01 22 44280171 44280171 G A PNPLA5 Missense_Mutation p.S335L 0.33 tolerated(1) possibly_damaging(0.884) TCGA-GS-A9TW-01 22 46319077 46319077 G A WNT7B Nonsense_Mutation p.Q237* 0.09 TCGA-GS-A9TW-01 22 46768825 46768825 G A CELSR1 Missense_Mutation p.R2572W 0.19 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TW-01 2 103431497 103431497 C A TMEM182 3'UTR 0.26 TCGA-GS-A9TW-01 2 110049003 110049003 G A SH3RF3 Missense_Mutation p.E484K 0.34 deleterious(0) possibly_damaging(0.841) TCGA-GS-A9TW-01 2 111144800 111144800 G C LINC01106 5'Flank 0.23 TCGA-GS-A9TW-01 2 113404650 113404650 G C SLC20A1 Missense_Mutation p.S82T 0.32 deleterious(0) possibly_damaging(0.88) TCGA-GS-A9TW-01 2 131878384 131878384 G A PLEKHB2 Intron 0.16 TCGA-GS-A9TW-01 2 144903223 144903223 T A GTDC1 Missense_Mutation p.Y88F 0.25 deleterious(0) probably_damaging(0.946) TCGA-GS-A9TW-01 2 149520269 149520269 C G EPC2 Missense_Mutation p.I282M 0.15 deleterious(0.02) benign(0.103) TCGA-GS-A9TW-01 2 163144683 163144684 - T IFIH1 Frame_Shift_Ins p.A353Sfs*3 0.23 TCGA-GS-A9TW-01 2 167298253 167298253 A T SCN7A Missense_Mutation p.F604I 0.27 deleterious(0.01) possibly_damaging(0.792) TCGA-GS-A9TW-01 2 170038720 170038722 AGA - LRP2 In_Frame_Del p.F3318del 0.16 TCGA-GS-A9TW-01 2 174224116 174224116 A G CDCA7 Missense_Mutation p.K94R 0.30 tolerated(0.07) possibly_damaging(0.796) TCGA-GS-A9TW-01 2 1926161 1926161 G C MYT1L Missense_Mutation p.D460E 0.29 tolerated(0.39) benign(0.011) TCGA-GS-A9TW-01 2 201284179 201284179 G C SPATS2L Silent p.S135S 0.34 TCGA-GS-A9TW-01 2 20401979 20401979 C T SDC1 3'UTR 0.15 TCGA-GS-A9TW-01 2 204082081 204082081 T G NBEAL1 3'UTR 0.25 TCGA-GS-A9TW-01 2 206166288 206166288 C A PARD3B Silent p.A769A 0.15 TCGA-GS-A9TW-01 2 20648155 20648155 C G RHOB 3'UTR 0.14 TCGA-GS-A9TW-01 2 21241889 21241890 GG C APOB Frame_Shift_Del p.T1032Sfs*2 0.25 TCGA-GS-A9TW-01 2 223787815 223787815 G A ACSL3 Missense_Mutation p.G367E 0.23 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 2 234094523 234094523 A G INPP5D Silent p.E758E 0.34 TCGA-GS-A9TW-01 2 235961383 235961383 G T SH3BP4 Missense_Mutation p.V886L 0.24 tolerated(0.23) benign(0.002) TCGA-GS-A9TW-01 2 237489798 237489798 C A ACKR3 Silent p.V230V 0.20 TCGA-GS-A9TW-01 2 26916003 26916003 C T KCNK3 Missense_Mutation p.A87V 0.14 deleterious(0.02) probably_damaging(0.961) TCGA-GS-A9TW-01 2 27601207 27601207 A G ZNF513 Silent p.H277H 0.29 TCGA-GS-A9TW-01 2 27886844 27886844 G A SLC4A1AP Silent p.K75K 0.29 TCGA-GS-A9TW-01 2 58459217 58459217 G A FANCL Missense_Mutation p.P43S 0.32 tolerated(0.06) benign(0.412) TCGA-GS-A9TW-01 2 61719472 61719472 C T XPO1 Missense_Mutation p.E571K 0.30 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 2 65561836 65561836 C G SPRED2 Missense_Mutation p.K92N 0.33 deleterious(0.01) benign(0.226) TCGA-GS-A9TW-01 2 86669185 86669185 C T KDM3A Silent p.L5L 0.40 TCGA-GS-A9TW-01 2 87012945 87012945 T C CD8A 3'UTR 0.22 TCGA-GS-A9TW-01 2 8890423 8890423 G A KIDINS220 Missense_Mutation p.A1078V 0.10 tolerated(0.3) benign(0.047) TCGA-GS-A9TW-01 2 90199026 90199026 G A IGKV1D-12 Missense_Mutation p.G63R 0.28 deleterious(0.01) benign(0.328) TCGA-GS-A9TW-01 2 96852378 96852378 A C STARD7 3'UTR 0.39 TCGA-GS-A9TW-01 2 97637661 97637661 T C FAM178B Missense_Mutation p.S181G 0.37 tolerated(0.08) benign(0.019) TCGA-GS-A9TW-01 3 112719765 112719765 A G GTPBP8 Silent p.%3D 0.30 TCGA-GS-A9TW-01 3 122288596 122288596 G C DTX3L Missense_Mutation p.D554H 0.36 deleterious(0.04) benign(0.02) TCGA-GS-A9TW-01 3 133557035 133557035 G A RAB6B Missense_Mutation p.A157V 0.34 deleterious(0) probably_damaging(0.991) TCGA-GS-A9TW-01 3 142281284 142281284 C A ATR Missense_Mutation p.M320I 0.35 tolerated_low_confidence(0.53) benign(0.001) TCGA-GS-A9TW-01 3 14744677 14744677 G A C3orf20 Silent p.L262L 0.11 TCGA-GS-A9TW-01 3 169557602 169557602 G A LRRC31 3'UTR 0.24 TCGA-GS-A9TW-01 3 183663729 183663729 T C ABCC5 Splice_Site p.X1139_splice 0.10 TCGA-GS-A9TW-01 3 19322823 19322823 T C KCNH8 Splice_Site p.X148_splice 0.30 TCGA-GS-A9TW-01 3 196675140 196675140 G A PIGZ Missense_Mutation p.R210W 0.08 tolerated(0.21) benign(0) TCGA-GS-A9TW-01 3 3888234 3888234 G C LRRN1 Missense_Mutation p.G637R 0.20 deleterious(0) probably_damaging(0.937) TCGA-GS-A9TW-01 3 39178869 39178869 G A TTC21A Silent p.A1154A 0.20 TCGA-GS-A9TW-01 3 44488625 44488625 C A ZNF445 Silent p.G846G 0.32 TCGA-GS-A9TW-01 3 44776170 44776170 C T ZNF501 Missense_Mutation p.A86V 0.16 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-GS-A9TW-01 3 47033973 47033973 G A NBEAL2 Silent p.L347L 0.11 TCGA-GS-A9TW-01 3 50405270 50405270 C T CACNA2D2 Missense_Mutation p.R743H 0.15 tolerated(0.39) possibly_damaging(0.817) TCGA-GS-A9TW-01 3 51430470 51430470 A G RBM15B Missense_Mutation p.E547G 0.09 tolerated(0.34) possibly_damaging(0.52) TCGA-GS-A9TW-01 3 53810902 53810902 C A CACNA1D Missense_Mutation p.H1522Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TW-01 3 65376868 65376868 G T MAGI1 Missense_Mutation p.P789T 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-GS-A9TW-01 3 69237039 69237039 G A FRMD4B Nonsense_Mutation p.R601* 0.21 TCGA-GS-A9TW-01 4 100461611 100461618 AGGTTAAG - C4orf17 Splice_Site p.X293_splice 0.29 TCGA-GS-A9TW-01 4 103585914 103585914 G A MANBA Silent p.F471F 0.30 TCGA-GS-A9TW-01 4 1107159 1107159 C T RNF212 Missense_Mutation p.A32T 0.15 tolerated(0.18) benign(0.405) TCGA-GS-A9TW-01 4 122250653 122250653 C T QRFPR Missense_Mutation p.R371Q 0.10 tolerated(1) benign(0.001) TCGA-GS-A9TW-01 4 123302200 123302200 G A ADAD1 Missense_Mutation p.V76I 0.28 tolerated(0.28) benign(0.001) TCGA-GS-A9TW-01 4 1369187 1369187 C T UVSSA Missense_Mutation p.R442W 0.15 tolerated(0.08) benign(0) TCGA-GS-A9TW-01 4 154525477 154525477 C A KIAA0922 Missense_Mutation p.L1105I 0.26 tolerated(0.1) benign(0.192) TCGA-GS-A9TW-01 4 156757920 156757920 T G ASIC5 Missense_Mutation p.I386L 0.32 tolerated(0.41) benign(0.02) TCGA-GS-A9TW-01 4 186425668 186425668 T C PDLIM3 Missense_Mutation p.Q289R 0.10 deleterious(0) benign(0.267) TCGA-GS-A9TW-01 4 5811243 5811243 A G EVC Splice_Site p.X897_splice 0.33 TCGA-GS-A9TW-01 4 5811258 5811258 A C EVC Missense_Mutation p.N901T 0.32 tolerated(0.95) benign(0.001) TCGA-GS-A9TW-01 4 5811337 5811337 A G EVC Silent p.L927L 0.29 TCGA-GS-A9TW-01 4 70615486 70615486 G A SULT1B1 Silent p.L110L 0.16 TCGA-GS-A9TW-01 4 73984561 73984561 A G ANKRD17 Silent p.A1344A 0.26 TCGA-GS-A9TW-01 4 7677865 7677865 C T SORCS2 Missense_Mutation p.S417L 0.12 deleterious(0) possibly_damaging(0.716) TCGA-GS-A9TW-01 4 84377168 84377168 G C MRPS18C 5'UTR 0.23 TCGA-GS-A9TW-01 4 91230610 91230610 G A CCSER1 Missense_Mutation p.R392K 0.14 tolerated(0.36) benign(0.005) TCGA-GS-A9TW-01 4 96090284 96090284 G A UNC5C 3'UTR 0.15 TCGA-GS-A9TW-01 5 131630330 131630330 G A SLC22A4 Silent p.V7V 0.13 TCGA-GS-A9TW-01 5 135228070 135228070 T C IL9 3'UTR 0.14 TCGA-GS-A9TW-01 5 137801745 137801745 C T EGR1 Missense_Mutation p.H99Y 0.10 deleterious(0.02) unknown(0) TCGA-GS-A9TW-01 5 140250876 140250876 G A PCDHA11 Missense_Mutation p.A730T 0.15 tolerated_low_confidence(0.17) benign(0.011) TCGA-GS-A9TW-01 5 143539838 143539838 G A YIPF5 3'UTR 0.34 TCGA-GS-A9TW-01 5 148620293 148620293 C G ABLIM3 Missense_Mutation p.S420C 0.59 tolerated(0.07) possibly_damaging(0.88) TCGA-GS-A9TW-01 5 153434796 153434796 G A MFAP3 3'UTR 0.13 TCGA-GS-A9TW-01 5 154393399 154393399 A G KIF4B 5'UTR 0.10 TCGA-GS-A9TW-01 5 154393400 154393400 G A KIF4B 5'UTR 0.09 TCGA-GS-A9TW-01 5 160025799 160025799 T G ATP10B Missense_Mutation p.Y1181S 0.12 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 5 160025810 160025810 C T ATP10B Silent p.L1177L 0.14 TCGA-GS-A9TW-01 5 160047422 160047422 C T ATP10B Missense_Mutation p.G783D 0.10 tolerated(0.66) benign(0.014) TCGA-GS-A9TW-01 5 175824641 175824641 C T CLTB Missense_Mutation p.S144N 0.12 tolerated(0.8) benign(0.022) TCGA-GS-A9TW-01 5 175913491 175913491 G A FAF2 Splice_Site p.X89_splice 0.42 TCGA-GS-A9TW-01 5 179034660 179034660 G C RUFY1 Missense_Mutation p.K661N 0.12 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 5 2749795 2749795 T C IRX2 Missense_Mutation p.K119R 0.20 deleterious(0) probably_damaging(0.985) TCGA-GS-A9TW-01 5 38504138 38504138 A G LIFR Silent p.F459F 0.12 TCGA-GS-A9TW-01 5 50683348 50683348 G A ISL1 Silent p.K81K 0.12 TCGA-GS-A9TW-01 5 53815937 53815937 G A SNX18 3'UTR 0.05 TCGA-GS-A9TW-01 5 64883114 64883114 G A PPWD1 Missense_Mutation p.R611Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 5 71756780 71756780 G C ZNF366 Missense_Mutation p.P182A 0.53 tolerated_low_confidence(0.06) benign(0.027) TCGA-GS-A9TW-01 5 72189245 72189245 A C TNPO1 Missense_Mutation p.K646N 0.12 deleterious(0) possibly_damaging(0.834) TCGA-GS-A9TW-01 5 79375894 79375894 A G THBS4 Missense_Mutation p.Y893C 0.12 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TW-01 5 90151709 90151709 T C GPR98 Missense_Mutation p.C5916R 0.51 probably_damaging(0.951) TCGA-GS-A9TW-01 5 9629682 9629682 A C TAS2R1 Missense_Mutation p.F155V 0.14 tolerated(0.58) benign(0.01) TCGA-GS-A9TW-01 6 111685068 111685068 T C REV3L Silent p.K2289K 0.13 TCGA-GS-A9TW-01 6 116836827 116836827 G A FAM26E Missense_Mutation p.R202H 0.27 tolerated(0.18) benign(0.09) TCGA-GS-A9TW-01 6 118606389 118606389 A G SLC35F1 Missense_Mutation p.Y297C 0.08 deleterious(0) probably_damaging(0.993) TCGA-GS-A9TW-01 6 149826425 149826425 T C PPIL4 3'UTR 0.12 TCGA-GS-A9TW-01 6 154411241 154411241 G A OPRM1 Missense_Mutation p.V284I 0.43 tolerated(0.34) benign(0.065) TCGA-GS-A9TW-01 6 15504821 15504821 G A JARID2 Missense_Mutation p.E847K 0.54 deleterious(0) probably_damaging(0.953) TCGA-GS-A9TW-01 6 158923067 158923067 G C TULP4 Missense_Mutation p.G791A 0.11 tolerated_low_confidence(0.17) benign(0.111) TCGA-GS-A9TW-01 6 160679674 160679674 C T SLC22A2 Missense_Mutation p.G39D 0.09 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 6 165693283 165693283 A T C6orf118 3'UTR 0.36 TCGA-GS-A9TW-01 6 26197219 26197219 C G HIST1H3D Missense_Mutation p.S87T 0.16 tolerated_low_confidence(0.06) benign(0.111) TCGA-GS-A9TW-01 6 26598677 26598677 C T ABT1 Missense_Mutation p.S208F 0.44 deleterious(0.02) possibly_damaging(0.576) TCGA-GS-A9TW-01 6 27806377 27806377 A G HIST1H2BN 5'Flank 0.10 TCGA-GS-A9TW-01 6 27860532 27860532 C T HIST1H2AM 3'UTR 0.08 TCGA-GS-A9TW-01 6 29274587 29274587 C T OR14J1 Missense_Mutation p.L41F 0.11 tolerated(0.27) benign(0.005) TCGA-GS-A9TW-01 6 32046854 32046854 T C RNA5SP206 5'Flank 0.08 TCGA-GS-A9TW-01 6 36447473 36447473 C T KCTD20 Nonsense_Mutation p.R215* 0.43 TCGA-GS-A9TW-01 6 43484639 43484639 A G YIPF3 5'UTR 0.09 TCGA-GS-A9TW-01 6 44218144 44218144 A C HSP90AB1 Silent p.S255S 0.14 TCGA-GS-A9TW-01 6 44228008 44228008 A G NFKBIE Silent p.S403S 0.28 TCGA-GS-A9TW-01 6 44274068 44274068 G A AARS2 Missense_Mutation p.R417W 0.16 deleterious(0.01) possibly_damaging(0.863) TCGA-GS-A9TW-01 6 70098685 70098685 G A BAI3 Missense_Mutation p.E1491K 0.43 tolerated(0.87) benign(0.054) TCGA-GS-A9TW-01 6 71569803 71569803 G C B3GAT2 3'UTR 0.56 TCGA-GS-A9TW-01 6 72596832 72596832 A G RIMS1 Missense_Mutation p.I36V 0.44 deleterious(0) possibly_damaging(0.801) TCGA-GS-A9TW-01 6 76660433 76660433 T C IMPG1 Missense_Mutation p.Q557R 0.27 tolerated(0.42) benign(0.02) TCGA-GS-A9TW-01 6 86215577 86215577 A G SNX14 3'UTR 0.17 TCGA-GS-A9TW-01 6 97627392 97627392 G C MMS22L Missense_Mutation p.Q810E 0.09 tolerated(0.23) probably_damaging(0.968) TCGA-GS-A9TW-01 6 99284724 99284724 G A POU3F2 3'UTR 0.20 TCGA-GS-A9TW-01 7 100459153 100459153 C T SLC12A9 Nonsense_Mutation p.R495* 0.32 TCGA-GS-A9TW-01 7 102212962 102212962 C A POLR2J3 Missense_Mutation p.A3S 0.10 deleterious(0) possibly_damaging(0.893) TCGA-GS-A9TW-01 7 102235784 102235784 G A RASA4 Silent p.L347L 0.18 TCGA-GS-A9TW-01 7 1095023 1095023 C G GPR146 5'UTR 0.21 TCGA-GS-A9TW-01 7 116422095 116422095 G A MET Missense_Mutation p.M1210I 0.17 deleterious(0) probably_damaging(0.987) TCGA-GS-A9TW-01 7 117400606 117400606 T G CTTNBP2 Missense_Mutation p.N1019H 0.38 deleterious(0) possibly_damaging(0.498) TCGA-GS-A9TW-01 7 121726174 121726174 A - AASS Frame_Shift_Del p.P693Qfs*3 0.24 TCGA-GS-A9TW-01 7 132959870 132959870 C T EXOC4 Missense_Mutation p.R74C 0.21 deleterious(0) probably_damaging(0.994) TCGA-GS-A9TW-01 7 134730655 134730655 G A AGBL3 Missense_Mutation p.E612K 0.29 deleterious(0.01) possibly_damaging(0.731) TCGA-GS-A9TW-01 7 143771336 143771336 C T OR2A25 Silent p.I8I 0.17 TCGA-GS-A9TW-01 7 14384983 14384983 G A DGKB Silent p.G624G 0.08 TCGA-GS-A9TW-01 7 150733637 150733637 T G ABCB8 Missense_Mutation p.V373G 0.36 deleterious(0) probably_damaging(0.97) TCGA-GS-A9TW-01 7 151902302 151902302 C T KMT2C Missense_Mutation p.G1284R 0.32 probably_damaging(0.992) TCGA-GS-A9TW-01 7 23165412 23165412 G A KLHL7 Intron 0.49 TCGA-GS-A9TW-01 7 41730053 41730053 A G INHBA Missense_Mutation p.L159P 0.11 deleterious(0) probably_damaging(0.987) TCGA-GS-A9TW-01 7 75625743 75625743 C T STYXL1 3'UTR 0.35 TCGA-GS-A9TW-01 7 82584908 82584908 C G PCLO Missense_Mutation p.K1787N 0.28 unknown(0) TCGA-GS-A9TW-01 7 97991678 97991678 C A BAIAP2L1 Missense_Mutation p.A40S 0.17 tolerated(0.35) probably_damaging(1) TCGA-GS-A9TW-01 7 98652487 98652487 G C SMURF1 Silent p.V135V 0.25 TCGA-GS-A9TW-01 7 99696301 99696301 G A MCM7 Missense_Mutation p.P207L 0.26 tolerated(0.05) benign(0.111) TCGA-GS-A9TW-01 8 105367391 105367391 G A DCSTAMP Missense_Mutation p.R439Q 0.10 tolerated(0.11) benign(0.001) TCGA-GS-A9TW-01 8 120850640 120850640 G A DSCC1 Missense_Mutation p.A311V 0.42 tolerated(0.05) probably_damaging(0.983) TCGA-GS-A9TW-01 8 121219248 121219248 T G COL14A1 Missense_Mutation p.F369C 0.32 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 8 121219273 121219273 A T COL14A1 Silent p.P377P 0.36 TCGA-GS-A9TW-01 8 12882894 12882894 C T KIAA1456 3'UTR 0.44 TCGA-GS-A9TW-01 8 131193073 131193073 C T ASAP1 Missense_Mutation p.R195H 0.10 deleterious(0) probably_damaging(0.964) TCGA-GS-A9TW-01 8 145559888 145559888 C T SCRT1 5'UTR 0.09 TCGA-GS-A9TW-01 8 21996529 21996529 C T REEP4 Missense_Mutation p.D155N 0.49 deleterious(0.01) probably_damaging(0.99) TCGA-GS-A9TW-01 8 22865187 22865187 G A RHOBTB2 Missense_Mutation p.E499K 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-GS-A9TW-01 8 28627490 28627490 G A INTS9 Silent p.S572S 0.12 TCGA-GS-A9TW-01 8 33354191 33354191 G A MAK16 Missense_Mutation p.E191K 0.08 tolerated(0.18) benign(0.113) TCGA-GS-A9TW-01 8 56715141 56715141 G C TGS1 Missense_Mutation p.D659H 0.14 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TW-01 8 6302752 6302752 T C MCPH1 Silent p.P503P 0.10 TCGA-GS-A9TW-01 8 70533350 70533350 G A SULF1 Silent p.R486R 0.10 TCGA-GS-A9TW-01 8 74204061 74204061 G C RPL7 Silent p.L125L 0.20 TCGA-GS-A9TW-01 8 92301369 92301369 G A SLC26A7 Missense_Mutation p.A67T 0.27 deleterious(0) possibly_damaging(0.542) TCGA-GS-A9TW-01 8 94935821 94935821 C T PDP1 Nonsense_Mutation p.R537* 0.10 TCGA-GS-A9TW-01 8 95676969 95676969 G A ESRP1 Missense_Mutation p.R230Q 0.40 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 8 99015973 99015973 G A MATN2 Missense_Mutation p.R430H 0.09 tolerated(0.06) benign(0.238) TCGA-GS-A9TW-01 8 99591963 99591963 C T STK3 Missense_Mutation p.E321K 0.08 deleterious(0.04) benign(0.051) TCGA-GS-A9TW-01 9 103054777 103054777 C T INVS Silent p.S746S 0.27 TCGA-GS-A9TW-01 9 104124652 104124652 G C BAAT 3'UTR 0.22 TCGA-GS-A9TW-01 9 106875690 106875690 G T SMC2 Missense_Mutation p.A450S 0.37 tolerated(0.45) benign(0.021) TCGA-GS-A9TW-01 9 111849490 111849490 A C TMEM245 Missense_Mutation p.V428G 0.34 tolerated(0.14) benign(0.023) TCGA-GS-A9TW-01 9 113538189 113538189 A C MUSK Missense_Mutation p.K436Q 0.28 tolerated(0.24) benign(0.032) TCGA-GS-A9TW-01 9 117063404 117063404 C T COL27A1 Missense_Mutation p.P1585L 0.08 unknown(0) TCGA-GS-A9TW-01 9 135261984 135261984 A T TTF1 Missense_Mutation p.D779E 0.21 tolerated(0.07) possibly_damaging(0.541) TCGA-GS-A9TW-01 9 139262270 139262270 G A CARD9 Missense_Mutation p.T363M 0.33 tolerated(0.08) benign(0.063) TCGA-GS-A9TW-01 9 14775791 14775791 A C FREM1 Missense_Mutation p.I1618S 0.21 deleterious(0) probably_damaging(0.98) TCGA-GS-A9TW-01 9 21239704 21239704 G A IFNA14 Silent p.I77I 0.22 TCGA-GS-A9TW-01 9 36339657 36339657 G T RNF38 3'UTR 0.09 TCGA-GS-A9TW-01 9 38586183 38586183 C G ANKRD18A Missense_Mutation p.Q748H 0.10 tolerated(1) benign(0) TCGA-GS-A9TW-01 9 6331285 6331285 G A TPD52L3 3'Flank 0.21 TCGA-GS-A9TW-01 9 96320115 96320115 C G FAM120A Missense_Mutation p.Q831E 0.34 tolerated(0.23) benign(0.037) TCGA-GS-A9TW-01 X 105153118 105153118 C T NRK Silent p.S496S 0.10 TCGA-GS-A9TW-01 X 12994405 12994410 GAGATC - TMSB4X In_Frame_Del p.I10_E11del 0.17 TCGA-GS-A9TW-01 X 132833966 132833966 C A GPC3 Missense_Mutation p.V398F 0.34 deleterious(0.03) possibly_damaging(0.88) TCGA-GS-A9TW-01 X 13727323 13727323 C T RAB9A Missense_Mutation p.T153I 0.16 deleterious(0) probably_damaging(1) TCGA-GS-A9TW-01 X 138708452 138708452 A C MCF2 Missense_Mutation p.V256G 0.33 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TW-01 X 140984761 140984761 G T MAGEC3 Missense_Mutation p.G406V 0.24 deleterious(0.01) benign(0.134) TCGA-GS-A9TW-01 X 149899968 149899968 A G MTMR1 Missense_Mutation p.I248M 0.33 deleterious(0.02) benign(0.188) TCGA-GS-A9TW-01 X 151817742 151817742 G C GABRQ Missense_Mutation p.D186H 0.39 deleterious(0) probably_damaging(0.978) TCGA-GS-A9TW-01 X 153136372 153136372 C T L1CAM Silent p.Q189Q 0.32 TCGA-GS-A9TW-01 X 1584685 1584685 A G P2RY8 Missense_Mutation p.V256A 0.46 tolerated(0.08) possibly_damaging(0.622) TCGA-GS-A9TW-01 X 1584688 1584688 A G P2RY8 Missense_Mutation p.F255S 0.48 deleterious(0.01) possibly_damaging(0.499) TCGA-GS-A9TW-01 X 1712439 1712439 C T AKAP17A Silent p.T28T 0.26 TCGA-GS-A9TW-01 X 36007755 36007755 T A CXorf22 3'UTR 0.37 TCGA-GS-A9TW-01 X 48687456 48687456 C T ERAS 5'UTR 0.39 TCGA-GS-A9TW-01 X 54209068 54209068 C T FAM120C Silent p.Q188Q 0.36 TCGA-GS-A9TW-01 X 66937418 66937418 G C AR Missense_Mutation p.V758L 0.14 deleterious(0.03) probably_damaging(0.982) TCGA-GS-A9TW-01 X 69253328 69253328 G C EDA Missense_Mutation p.E292Q 0.28 tolerated_low_confidence(0.06) benign(0.254) TCGA-GS-A9TW-01 X 71426262 71426262 C T ERCC6L Silent p.E785E 0.28 TCGA-GS-A9TW-01 X 82764220 82764220 T C POU3F4 Silent p.H296H 0.17 TCGA-GS-A9TW-01 X 8763298 8763298 C G FAM9A Missense_Mutation p.V218L 0.39 tolerated_low_confidence(0.36) unknown(0) TCGA-GS-A9TW-01 X 91134203 91134203 C A PCDH11X Silent p.P988P 0.15 TCGA-GS-A9TW-01 X 91134309 91134309 T - PCDH11X Intron 0.21 TCGA-GS-A9TW-01 X 91518117 91518117 A T PCDH11X Missense_Mutation p.K1040I 0.31 deleterious(0.04) benign(0.439) TCGA-GS-A9TX-01 10 103921392 103921392 C T NOLC1 Silent p.T607T 0.08 TCGA-GS-A9TX-01 10 114200386 114200386 A C ZDHHC6 Missense_Mutation p.V196G 0.16 deleterious(0) possibly_damaging(0.47) TCGA-GS-A9TX-01 10 126370833 126370833 T C FAM53B Silent p.A83A 0.14 TCGA-GS-A9TX-01 10 69881923 69881923 G A MYPN Missense_Mutation p.S243N 0.08 tolerated(0.78) benign(0) TCGA-GS-A9TX-01 10 72298670 72298670 C T PALD1 Missense_Mutation p.P492L 0.23 tolerated(1) benign(0.001) TCGA-GS-A9TX-01 11 17660365 17660365 C T OTOG Intron 0.10 TCGA-GS-A9TX-01 11 92533495 92533495 G A FAT3 Missense_Mutation p.R2439Q 0.12 possibly_damaging(0.836) TCGA-GS-A9TX-01 12 110784429 110784429 A G ATP2A2 3'UTR 0.24 TCGA-GS-A9TX-01 12 41333181 41333181 C A CNTN1 Missense_Mutation p.L425M 0.14 tolerated(0.21) probably_damaging(0.971) TCGA-GS-A9TX-01 12 57498330 57498330 C T STAT6 Missense_Mutation p.E377K 0.13 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TX-01 12 64536277 64536277 C T SRGAP1 Missense_Mutation p.T1028M 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.454) TCGA-GS-A9TX-01 13 61986625 61986625 A C PCDH20 Missense_Mutation p.L536R 0.11 tolerated(0.09) benign(0.025) TCGA-GS-A9TX-01 14 107178838 107178838 C G IGHV2-70 Silent p.T113T 0.11 TCGA-GS-A9TX-01 14 107178952 107178952 A G IGHV2-70 Silent p.D75D 0.10 TCGA-GS-A9TX-01 14 21550988 21550988 A T ARHGEF40 Splice_Site p.X1163_splice 0.11 TCGA-GS-A9TX-01 14 50809772 50809772 G A CDKL1 Intron 0.07 TCGA-GS-A9TX-01 14 60213178 60213178 G A RTN1 Missense_Mutation p.A88V 0.11 tolerated(0.13) benign(0.008) TCGA-GS-A9TX-01 14 75746471 75746471 C T FOS Intron 0.09 TCGA-GS-A9TX-01 14 77844211 77844211 C T SAMD15 Silent p.F150F 0.11 TCGA-GS-A9TX-01 14 95921881 95921881 G A SYNE3 Missense_Mutation p.R324W 0.10 deleterious(0.02) possibly_damaging(0.776) TCGA-GS-A9TX-01 15 29400484 29400484 C T APBA2 Silent p.N643N 0.10 TCGA-GS-A9TX-01 15 41136695 41136695 G A SPINT1 5'UTR 0.08 TCGA-GS-A9TX-01 15 43621847 43621847 C T LCMT2 Missense_Mutation p.A281T 0.10 tolerated(0.27) benign(0.006) TCGA-GS-A9TX-01 15 44966585 44966585 C T PATL2 Intron 0.25 TCGA-GS-A9TX-01 15 57574703 57574703 C T TCF12 Missense_Mutation p.A680V 0.08 tolerated(0.11) benign(0.073) TCGA-GS-A9TX-01 15 90293287 90293287 A G MESP1 3'UTR 0.08 TCGA-GS-A9TX-01 16 11348710 11348710 A G SOCS1 Missense_Mutation p.F209S 0.09 deleterious(0) probably_damaging(0.937) TCGA-GS-A9TX-01 16 23200744 23200744 G A SCNN1G Missense_Mutation p.A124T 0.33 tolerated(0.08) benign(0.077) TCGA-GS-A9TX-01 16 2607899 2607899 C T PDPK1 Missense_Mutation p.P74S 0.06 tolerated(0.13) benign(0.002) TCGA-GS-A9TX-01 16 28854280 28854280 G A TUFM 3'UTR 0.07 TCGA-GS-A9TX-01 16 30409997 30409997 G A ZNF48 Missense_Mutation p.E476K 0.08 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TX-01 16 3781324 3781326 AGG - CREBBP In_Frame_Del p.S1680del 0.26 TCGA-GS-A9TX-01 16 4752188 4752188 C T ANKS3 Silent p.L308L 0.15 TCGA-GS-A9TX-01 16 55608567 55608567 C T LPCAT2 Nonsense_Mutation p.R414* 0.12 TCGA-GS-A9TX-01 16 67861874 67861874 G A TSNAXIP1 Missense_Mutation p.R652Q 0.11 tolerated(0.05) benign(0.14) TCGA-GS-A9TX-01 16 70977755 70977755 G A HYDIN Missense_Mutation p.P2210L 0.17 possibly_damaging(0.698) TCGA-GS-A9TX-01 16 85954790 85954790 G A IRF8 Missense_Mutation p.E395K 0.07 deleterious(0.02) probably_damaging(0.991) TCGA-GS-A9TX-01 17 11584185 11584185 T C DNAH9 Missense_Mutation p.F1241S 0.08 possibly_damaging(0.656) TCGA-GS-A9TX-01 17 18167791 18167791 C T MIEF2 Silent p.L371L 0.09 TCGA-GS-A9TX-01 17 36829944 36829944 G A C17orf96 Missense_Mutation p.R269C 0.08 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-GS-A9TX-01 17 5984107 5984107 A G WSCD1 Silent p.P43P 0.08 TCGA-GS-A9TX-01 17 67084398 67084398 G A ABCA6 Missense_Mutation p.P1203L 0.22 deleterious(0) possibly_damaging(0.861) TCGA-GS-A9TX-01 17 73922160 73922160 G A FBF1 Silent p.T259T 0.08 TCGA-GS-A9TX-01 17 7918797 7918797 G A GUCY2D Missense_Mutation p.R974H 0.11 tolerated(0.08) probably_damaging(0.997) TCGA-GS-A9TX-01 17 79414261 79414261 A G RP11-1055B8.7 Silent p.S1121S 0.09 TCGA-GS-A9TX-01 17 7942834 7942834 A G ALOX15B Missense_Mutation p.Q93R 0.15 tolerated(0.33) benign(0.033) TCGA-GS-A9TX-01 18 51729361 51729361 C T MBD2 Intron 0.09 TCGA-GS-A9TX-01 19 12758084 12758084 G A MAN2B1 Silent p.R962R 0.11 TCGA-GS-A9TX-01 19 15291809 15291809 C T NOTCH3 Missense_Mutation p.C986Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TX-01 19 17305864 17305864 G A MYO9B Missense_Mutation p.A1210T 0.19 tolerated(0.52) benign(0.001) TCGA-GS-A9TX-01 19 17397422 17397422 G A ANKLE1 3'UTR 0.17 TCGA-GS-A9TX-01 19 17435527 17435527 T C ANO8 Silent p.S1110S 0.08 TCGA-GS-A9TX-01 19 36612575 36612575 C T TBCB Missense_Mutation p.R168W 0.08 tolerated(0.15) possibly_damaging(0.728) TCGA-GS-A9TX-01 19 46269712 46269712 C T SIX5 Missense_Mutation p.G502D 0.09 deleterious(0.02) benign(0.441) TCGA-GS-A9TX-01 19 47569619 47569619 G A ZC3H4 Silent p.C1302C 0.08 TCGA-GS-A9TX-01 19 47774716 47774716 G A CCDC9 Silent p.G459G 0.11 TCGA-GS-A9TX-01 19 49220117 49220117 T C MAMSTR Intron 0.27 TCGA-GS-A9TX-01 1 1229238 1229238 G A ACAP3 Silent p.I775I 0.09 TCGA-GS-A9TX-01 1 145474784 145474784 C T ANKRD34A Nonsense_Mutation p.Q486* 0.09 TCGA-GS-A9TX-01 1 16475014 16475014 C T EPHA2 Missense_Mutation p.G228S 0.08 deleterious(0) probably_damaging(1) TCGA-GS-A9TX-01 1 244218453 244218453 G A ZBTB18 Silent p.S459S 0.08 TCGA-GS-A9TX-01 1 248202348 248202348 G A OR2L2 Missense_Mutation p.R260H 0.16 tolerated(0.12) benign(0.022) TCGA-GS-A9TX-01 20 47262400 47262400 G A PREX1 Silent p.R1167R 0.22 TCGA-GS-A9TX-01 20 61143437 61143437 G A C20orf166 5'Flank 0.15 TCGA-GS-A9TX-01 20 61468517 61468517 T C COL9A3 Silent p.P562P 0.08 TCGA-GS-A9TX-01 22 22735517 22735517 A C IGLV1-44 Missense_Mutation p.T52P 0.13 tolerated_low_confidence(0.33) benign(0.002) TCGA-GS-A9TX-01 22 22735546 22735546 A G IGLV1-44 Silent p.G61G 0.15 TCGA-GS-A9TX-01 22 22764324 22764324 G A IGLV1-40 Silent p.V22V 0.11 TCGA-GS-A9TX-01 22 22764360 22764360 G A IGLV1-40 Silent p.G34G 0.09 TCGA-GS-A9TX-01 22 23243352 23243352 C T IGLC2 Silent p.Y66Y 0.10 TCGA-GS-A9TX-01 22 23248720 23248720 C T IGLC3 Silent p.S70S 0.07 TCGA-GS-A9TX-01 22 23523442 23523442 C T BCR Missense_Mutation p.P99S 0.14 tolerated_low_confidence(0.54) benign(0.011) TCGA-GS-A9TX-01 22 28394881 28394881 G C TTC28 Missense_Mutation p.A1589G 0.09 tolerated(0.24) benign(0.015) TCGA-GS-A9TX-01 2 100065955 100065955 C T REV1 Missense_Mutation p.E65K 0.23 deleterious(0.01) possibly_damaging(0.515) TCGA-GS-A9TX-01 2 141819775 141819775 G T LRP1B Silent p.R361R 0.19 TCGA-GS-A9TX-01 2 233272011 233272011 C T ALPPL2 Missense_Mutation p.T67M 0.08 deleterious(0) probably_damaging(1) TCGA-GS-A9TX-01 2 25351099 25351099 C A EFR3B Missense_Mutation p.T178K 0.31 deleterious(0) probably_damaging(1) TCGA-GS-A9TX-01 2 25470562 25470562 G A DNMT3A Silent p.S304S 0.07 TCGA-GS-A9TX-01 2 25966225 25966225 A T ASXL2 Missense_Mutation p.I994K 0.18 tolerated(0.18) benign(0.019) TCGA-GS-A9TX-01 2 25966254 25966254 T C ASXL2 Silent p.A984A 0.20 TCGA-GS-A9TX-01 2 25966278 25966278 T C ASXL2 Silent p.E976E 0.15 TCGA-GS-A9TX-01 2 60780393 60780393 T C BCL11A Missense_Mutation p.K5E 0.18 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-GS-A9TX-01 2 71036191 71036191 G C CLEC4F 3'UTR 0.20 TCGA-GS-A9TX-01 2 85857936 85857936 G C USP39 Missense_Mutation p.L272F 0.26 deleterious(0.03) benign(0.179) TCGA-GS-A9TX-01 3 147128671 147128671 G A ZIC1 Missense_Mutation p.V258M 0.07 tolerated(0.21) possibly_damaging(0.758) TCGA-GS-A9TX-01 3 170198934 170198934 G A SLC7A14 Silent p.S379S 0.16 TCGA-GS-A9TX-01 3 178960904 178960904 T - KCNMB3 Frame_Shift_Del p.I210Sfs*10 0.09 TCGA-GS-A9TX-01 3 183873478 183873478 G A DVL3 Missense_Mutation p.V19M 0.08 deleterious(0) probably_damaging(0.961) TCGA-GS-A9TX-01 3 4354652 4354652 T C SETMAR Missense_Mutation p.I76T 0.29 tolerated_low_confidence(0.37) benign(0.031) TCGA-GS-A9TX-01 3 48698377 48698377 A C CELSR3 Missense_Mutation p.V564G 0.18 deleterious(0) probably_damaging(0.961) TCGA-GS-A9TX-01 4 100208189 100208189 A G ADH1A Intron 0.09 TCGA-GS-A9TX-01 4 119273486 119273486 C T PRSS12 Silent p.L130L 0.08 TCGA-GS-A9TX-01 4 2420055 2420055 G A ZFYVE28 5'UTR 0.10 TCGA-GS-A9TX-01 4 68530944 68530944 A G UBA6 Missense_Mutation p.I287T 0.15 tolerated(0.07) benign(0.009) TCGA-GS-A9TX-01 4 87696720 87696720 G A PTPN13 Missense_Mutation p.G1941R 0.17 deleterious(0) probably_damaging(1) TCGA-GS-A9TX-01 5 128301873 128301873 G A SLC27A6 Missense_Mutation p.V15I 0.13 tolerated(0.58) benign(0.029) TCGA-GS-A9TX-01 5 137089386 137089386 C T HNRNPA0 Missense_Mutation p.V124M 0.14 deleterious(0.04) probably_damaging(0.984) TCGA-GS-A9TX-01 5 149792228 149792228 G A CD74 Nonsense_Mutation p.Q29* 0.16 TCGA-GS-A9TX-01 5 154255024 154255024 C T CNOT8 3'UTR 0.12 TCGA-GS-A9TX-01 5 180622466 180622466 G A TRIM7 Silent p.G412G 0.09 TCGA-GS-A9TX-01 5 9136647 9136647 G A SEMA5A Missense_Mutation p.T523M 0.08 deleterious(0.01) benign(0.022) TCGA-GS-A9TX-01 6 157099390 157099390 G C ARID1B Missense_Mutation p.Q109H 0.30 unknown(0) TCGA-GS-A9TX-01 6 170594362 170594362 T C DLL1 Missense_Mutation p.K338E 0.07 deleterious(0) benign(0.099) TCGA-GS-A9TX-01 6 27219769 27219769 G A PRSS16 Missense_Mutation p.G320S 0.14 tolerated(0.72) benign(0.002) TCGA-GS-A9TX-01 6 27775319 27775319 G T HIST1H2BL Nonsense_Mutation p.Y122* 0.12 TCGA-GS-A9TX-01 6 31549350 31549350 G A LTB Missense_Mutation p.A89V 0.15 tolerated(0.13) probably_damaging(0.999) TCGA-GS-A9TX-01 6 44360454 44360454 A T CDC5L Missense_Mutation p.E67V 0.13 deleterious(0) probably_damaging(1) TCGA-GS-A9TX-01 6 71571677 71571677 A G B3GAT2 Silent p.F247F 0.12 TCGA-GS-A9TX-01 6 90463852 90463852 G A MDN1 Nonsense_Mutation p.R972* 0.08 TCGA-GS-A9TX-01 7 149129118 149129118 G A ZNF777 Missense_Mutation p.P749S 0.09 deleterious(0.01) probably_damaging(1) TCGA-GS-A9TX-01 7 65217266 65217266 C T SNORA22 5'Flank 0.15 TCGA-GS-A9TX-01 7 81642816 81642818 ATA - CACNA2D1 In_Frame_Del p.Y411del 0.10 TCGA-GS-A9TX-01 7 95214802 95214802 G C PDK4 3'UTR 0.32 TCGA-GS-A9TX-01 8 27320801 27320801 C T CHRNA2 Missense_Mutation p.V387M 0.10 tolerated(0.11) benign(0.005) TCGA-GS-A9TX-01 9 101133835 101133835 T C GABBR2 Missense_Mutation p.T561A 0.12 tolerated(0.34) benign(0.023) TCGA-GS-A9TX-01 9 121971056 121971056 C T BRINP1 Silent p.K362K 0.15 TCGA-GS-A9TX-01 9 131790373 131790373 G A SH3GLB2 Nonsense_Mutation p.Q21* 0.14 TCGA-GS-A9TX-01 X 154250920 154250920 T C F8 5'UTR 0.33 TCGA-GS-A9TX-01 X 2843674 2843674 G A ARSD Silent p.Y59Y 0.08 TCGA-GS-A9TY-01 10 128193260 128193260 T C C10orf90 Missense_Mutation p.E170G 0.08 tolerated(0.5) benign(0.114) TCGA-GS-A9TY-01 10 51892825 51892825 G A FAM21A 3'UTR 0.41 TCGA-GS-A9TY-01 10 5790878 5790878 C G FAM208B Missense_Mutation p.L1832V 0.84 tolerated(0.07) benign(0.093) TCGA-GS-A9TY-01 10 7708859 7708859 G A ITIH5 5'UTR 0.08 TCGA-GS-A9TY-01 11 124496848 124496848 G A TBRG1 Missense_Mutation p.V214M 0.39 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TY-01 11 22214965 22214965 G T ANO5 5'UTR 0.38 TCGA-GS-A9TY-01 11 22249091 22249091 G T ANO5 Missense_Mutation p.D203Y 0.56 deleterious(0) probably_damaging(0.956) TCGA-GS-A9TY-01 11 46637180 46637180 A G HARBI1 Missense_Mutation p.L203P 0.59 deleterious(0) probably_damaging(0.916) TCGA-GS-A9TY-01 11 6263060 6263060 G A CNGA4 Intron 0.56 TCGA-GS-A9TY-01 11 63884662 63884662 C T FLRT1 Missense_Mutation p.T308M 0.53 tolerated(0.13) benign(0.102) TCGA-GS-A9TY-01 11 6898788 6898788 C T OR10A4 Missense_Mutation p.R304W 0.60 deleterious(0.02) benign(0.021) TCGA-GS-A9TY-01 11 78369308 78369308 G A TENM4 Missense_Mutation p.A2702V 0.42 deleterious(0) possibly_damaging(0.843) TCGA-GS-A9TY-01 11 89444662 89444662 G A TRIM77 Missense_Mutation p.G166R 0.30 tolerated(1) benign(0) TCGA-GS-A9TY-01 12 15035143 15035143 C T MGP Missense_Mutation p.R106H 0.07 tolerated(0.55) benign(0.171) TCGA-GS-A9TY-01 12 21918851 21918851 T G KCNJ8 Missense_Mutation p.K361Q 0.05 tolerated(0.17) probably_damaging(0.997) TCGA-GS-A9TY-01 12 31555505 31555505 A T DENND5B Missense_Mutation p.I959N 0.48 deleterious(0) probably_damaging(0.956) TCGA-GS-A9TY-01 12 43846488 43846488 C T ADAMTS20 Missense_Mutation p.G591R 0.48 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TY-01 12 49427324 49427324 G A KMT2D Nonsense_Mutation p.Q3722* 0.69 TCGA-GS-A9TY-01 12 51736400 51736400 G A CELA1 Silent p.I95I 0.17 TCGA-GS-A9TY-01 12 53454755 53454756 - C TENC1 Frame_Shift_Ins p.D1035Rfs*40 0.42 TCGA-GS-A9TY-01 12 54396394 54396394 T A HOXC9 Missense_Mutation p.F240Y 0.39 deleterious(0) probably_damaging(0.973) TCGA-GS-A9TY-01 12 56548600 56548600 G A MYL6B Missense_Mutation p.E60K 0.41 tolerated(0.09) benign(0.005) TCGA-GS-A9TY-01 12 57911207 57911207 T C DDIT3 Missense_Mutation p.T18A 0.61 tolerated_low_confidence(0.39) unknown(0) TCGA-GS-A9TY-01 12 7970447 7970447 A C SLC2A14 Missense_Mutation p.L442V 0.82 tolerated(0.05) possibly_damaging(0.827) TCGA-GS-A9TY-01 13 115037925 115037925 T A CDC16 3'UTR 0.25 TCGA-GS-A9TY-01 13 58208450 58208450 C T PCDH17 Silent p.N590N 0.39 TCGA-GS-A9TY-01 14 106110965 106110965 C T IGHG2 Missense_Mutation p.A55T 0.51 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TY-01 14 106330070 106330070 G A IGHJ5 Silent p.N1N 0.75 TCGA-GS-A9TY-01 14 106330074 106330074 T C IGHD7-27 3'Flank 0.76 TCGA-GS-A9TY-01 14 107048954 107048954 C T IGHV3-53 Silent p.Q22Q 0.46 TCGA-GS-A9TY-01 14 107178822 107178822 T G IGHV2-70 Missense_Mutation p.I119L 0.48 tolerated(0.66) benign(0) TCGA-GS-A9TY-01 14 107179039 107179039 G A IGHV2-70 Silent p.F46F 0.42 TCGA-GS-A9TY-01 14 107179040 107179040 A T IGHV2-70 Missense_Mutation p.F46Y 0.41 tolerated(0.17) possibly_damaging(0.467) TCGA-GS-A9TY-01 14 38678765 38678765 C T SSTR1 Silent p.S57S 0.07 TCGA-GS-A9TY-01 14 61186927 61186927 T C SIX4 Missense_Mutation p.N367S 0.28 tolerated(1) benign(0.014) TCGA-GS-A9TY-01 14 99641823 99641823 C T BCL11B Silent p.T450T 0.66 TCGA-GS-A9TY-01 15 30011279 30011279 C G TJP1 Missense_Mutation p.A1023P 0.81 tolerated_low_confidence(0.34) benign(0) TCGA-GS-A9TY-01 15 45003745 45003745 A T B2M Translation_Start_Site p.M1? 0.83 deleterious(0) possibly_damaging(0.456) TCGA-GS-A9TY-01 15 48062799 48062799 G C SEMA6D Missense_Mutation p.G680A 0.81 tolerated(0.06) possibly_damaging(0.615) TCGA-GS-A9TY-01 15 78453926 78453926 C T IDH3A Missense_Mutation p.P98L 0.31 deleterious(0) probably_damaging(1) TCGA-GS-A9TY-01 16 23200702 23200702 G A SCNN1G Missense_Mutation p.V110I 0.50 tolerated(0.24) benign(0.053) TCGA-GS-A9TY-01 16 3632584 3632584 G A SLX4 Missense_Mutation p.A1755V 0.15 deleterious(0.03) possibly_damaging(0.754) TCGA-GS-A9TY-01 16 4312624 4312624 G A TFAP4 Silent p.N56N 0.29 TCGA-GS-A9TY-01 16 816686 816686 C T MSLN Missense_Mutation p.R425C 0.16 tolerated(0.08) benign(0.262) TCGA-GS-A9TY-01 16 85942659 85942659 A G IRF8 Missense_Mutation p.T80A 0.62 deleterious(0) probably_damaging(0.981) TCGA-GS-A9TY-01 17 11648111 11648111 C A DNAH9 Intron 0.68 TCGA-GS-A9TY-01 17 18003008 18003008 G A DRG2 Missense_Mutation p.M146I 0.78 tolerated(0.1) benign(0.119) TCGA-GS-A9TY-01 17 18220580 18220580 C T SMCR8 Missense_Mutation p.L493F 0.78 tolerated(0.41) probably_damaging(0.999) TCGA-GS-A9TY-01 17 36971290 36971290 G A CWC25 Silent p.D84D 0.83 TCGA-GS-A9TY-01 17 4071128 4071128 G A ANKFY1 Missense_Mutation p.P1194L 0.74 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TY-01 17 41234477 41234477 C T BRCA1 Missense_Mutation p.S1434N 0.60 tolerated(0.07) benign(0.099) TCGA-GS-A9TY-01 17 46669811 46669811 G A HOXB5 Silent p.T190T 0.47 TCGA-GS-A9TY-01 17 61949409 61949409 A G CSH2 3'UTR 0.14 TCGA-GS-A9TY-01 17 61972331 61972332 - C CSH1 3'UTR 0.45 TCGA-GS-A9TY-01 17 72740447 72740447 G A RAB37 Missense_Mutation p.A128T 0.79 tolerated(0.08) possibly_damaging(0.52) TCGA-GS-A9TY-01 17 74093984 74093984 T A EXOC7 Missense_Mutation p.D178V 0.37 deleterious(0) benign(0.019) TCGA-GS-A9TY-01 17 74262008 74262008 C T UBALD2 Silent p.F47F 0.17 TCGA-GS-A9TY-01 17 74734244 74734244 G A MFSD11 5'UTR 0.42 TCGA-GS-A9TY-01 17 7577586 7577586 A G TP53 Missense_Mutation p.I232T 0.84 deleterious(0) possibly_damaging(0.617) TCGA-GS-A9TY-01 17 7798425 7798425 T C CHD3 Missense_Mutation p.L546P 0.72 probably_damaging(0.928) TCGA-GS-A9TY-01 17 78032381 78032381 C T CCDC40 Silent p.R416R 0.57 TCGA-GS-A9TY-01 18 59936160 59936160 A T KIAA1468 Silent p.G913G 0.76 TCGA-GS-A9TY-01 18 67996086 67996086 G A SOCS6 3'UTR 0.81 TCGA-GS-A9TY-01 18 72914061 72914061 G A ZADH2 Silent p.P148P 0.30 TCGA-GS-A9TY-01 18 8831766 8831766 C T SOGA2 3'UTR 0.55 TCGA-GS-A9TY-01 19 10103700 10103700 G A COL5A3 Missense_Mutation p.P598L 0.33 unknown(0) TCGA-GS-A9TY-01 19 11941439 11941439 G T ZNF440 Missense_Mutation p.R46S 0.46 tolerated(0.09) benign(0) TCGA-GS-A9TY-01 19 12911456 12911456 G A PRDX2 Intron 0.52 TCGA-GS-A9TY-01 19 14676686 14676686 G A TECR 3'UTR 0.31 TCGA-GS-A9TY-01 19 17615344 17615344 G A SLC27A1 Missense_Mutation p.D622N 0.23 tolerated(0.45) benign(0.079) TCGA-GS-A9TY-01 19 30934652 30934652 C T ZNF536 Silent p.P61P 0.23 TCGA-GS-A9TY-01 19 36205454 36205454 C T ZBTB32 5'UTR 0.52 TCGA-GS-A9TY-01 19 36332687 36332687 G A NPHS1 Silent p.Y915Y 0.41 TCGA-GS-A9TY-01 19 42859915 42859915 C T MEGF8 Missense_Mutation p.L1317F 0.81 deleterious(0.01) probably_damaging(0.974) TCGA-GS-A9TY-01 19 45991939 45991939 G T RTN2 Missense_Mutation p.T469N 0.17 deleterious(0) probably_damaging(0.976) TCGA-GS-A9TY-01 19 47575929 47575931 CTT - ZC3H4 In_Frame_Del p.K494del 0.17 TCGA-GS-A9TY-01 19 48182749 48182749 C T GLTSCR1 Missense_Mutation p.L108F 0.42 unknown(0) TCGA-GS-A9TY-01 19 54203300 54203300 T G MIR518F RNA 0.45 TCGA-GS-A9TY-01 19 8369939 8369939 C G CD320 Missense_Mutation p.D82H 0.32 deleterious(0) probably_damaging(0.991) TCGA-GS-A9TY-01 19 8953842 8953845 CAGT - MBD3L1 Frame_Shift_Del p.V164Efs*6 0.32 TCGA-GS-A9TY-01 1 109325324 109325324 G A STXBP3 Missense_Mutation p.G320E 0.04 tolerated(0.16) possibly_damaging(0.715) TCGA-GS-A9TY-01 1 1115711 1115711 G A TTLL10 Missense_Mutation p.G166E 0.40 deleterious(0.03) probably_damaging(1) TCGA-GS-A9TY-01 1 113254664 113254664 G A PPM1J Missense_Mutation p.R286W 0.24 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TY-01 1 113633983 113633983 G T LRIG2 Nonsense_Mutation p.E95* 0.19 TCGA-GS-A9TY-01 1 12884634 12884634 C T PRAMEF11 3'UTR 0.57 TCGA-GS-A9TY-01 1 13802549 13802549 C T LRRC38 Missense_Mutation p.C217Y 0.20 deleterious(0) possibly_damaging(0.825) TCGA-GS-A9TY-01 1 145075675 145075675 G A PDE4DIP Missense_Mutation p.A63V 0.10 tolerated_low_confidence(0.1) possibly_damaging(0.695) TCGA-GS-A9TY-01 1 1470884 1470884 C T TMEM240 Missense_Mutation p.G126D 0.66 tolerated_low_confidence(0.31) benign(0.037) TCGA-GS-A9TY-01 1 155928159 155928159 T G ARHGEF2 Silent p.V499V 0.22 TCGA-GS-A9TY-01 1 156221239 156221239 T C SMG5 Missense_Mutation p.K928R 0.17 tolerated(0.3) benign(0.006) TCGA-GS-A9TY-01 1 156694134 156694134 T C ISG20L2 Missense_Mutation p.K252E 0.06 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TY-01 1 160187428 160187428 G A DCAF8 Missense_Mutation p.S737L 0.17 deleterious(0.01) benign(0.017) TCGA-GS-A9TY-01 1 160252238 160252238 C T PEX19 Missense_Mutation p.S134N 0.20 tolerated(0.23) benign(0.006) TCGA-GS-A9TY-01 1 19403339 19403339 G A UBR4 Missense_Mutation p.R5128C 0.23 probably_damaging(0.993) TCGA-GS-A9TY-01 1 203274870 203274870 C G BTG2 Missense_Mutation p.L46V 0.63 deleterious(0.02) possibly_damaging(0.819) TCGA-GS-A9TY-01 1 205768918 205768918 C T SLC41A1 Missense_Mutation p.R174Q 0.23 tolerated(0.24) benign(0.061) TCGA-GS-A9TY-01 1 217915347 217915347 A T SPATA17 Missense_Mutation p.K142N 0.94 deleterious(0.05) benign(0.024) TCGA-GS-A9TY-01 1 23696479 23696479 T A C1orf213 3'UTR 0.41 TCGA-GS-A9TY-01 1 248845140 248845140 C T OR14I1 Missense_Mutation p.V156I 0.19 tolerated(0.16) benign(0.024) TCGA-GS-A9TY-01 1 36101985 36101986 AC - PSMB2 Frame_Shift_Del p.V47Wfs*21 0.36 TCGA-GS-A9TY-01 1 6208928 6208928 A T CHD5 Missense_Mutation p.C457S 0.64 deleterious(0) probably_damaging(0.948) TCGA-GS-A9TY-01 1 6208973 6208973 A C CHD5 Missense_Mutation p.C442G 0.60 deleterious(0) probably_damaging(0.938) TCGA-GS-A9TY-01 1 92647539 92647539 G T KIAA1107 Missense_Mutation p.K995N 0.51 tolerated(1) benign(0.003) TCGA-GS-A9TY-01 20 14307681 14307681 G A FLRT3 Silent p.L158L 0.23 TCGA-GS-A9TY-01 20 16721765 16721765 T A SNRPB2 3'UTR 0.48 TCGA-GS-A9TY-01 20 23618483 23618483 C T CST3 Missense_Mutation p.R6H 0.21 tolerated(0.5) unknown(0) TCGA-GS-A9TY-01 20 58558068 58558068 G T CDH26 Missense_Mutation p.A162S 0.20 deleterious(0.04) possibly_damaging(0.728) TCGA-GS-A9TY-01 20 61526223 61526223 G T DIDO1 Missense_Mutation p.T792K 0.58 benign(0.091) TCGA-GS-A9TY-01 21 43161043 43161043 G A RIPK4 Silent p.G770G 0.55 TCGA-GS-A9TY-01 21 46951719 46951719 C T SLC19A1 Missense_Mutation p.G178D 0.09 deleterious(0.04) probably_damaging(0.982) TCGA-GS-A9TY-01 22 22385599 22385599 G C IGLV4-69 Missense_Mutation p.A30P 0.41 tolerated(0.09) probably_damaging(0.98) TCGA-GS-A9TY-01 22 22385667 22385682 CATCGCATGGCATCAG - IGLV4-69 Frame_Shift_Del p.I53Sfs*10 0.41 TCGA-GS-A9TY-01 22 22385717 22385717 A G IGLV4-69 Missense_Mutation p.K69R 0.35 tolerated(0.45) benign(0.005) TCGA-GS-A9TY-01 22 22385719 22385719 C T IGLV4-69 Missense_Mutation p.L70F 0.43 tolerated(0.28) possibly_damaging(0.806) TCGA-GS-A9TY-01 22 22516793 22516793 A G IGLV4-60 Silent p.Q27Q 0.45 TCGA-GS-A9TY-01 22 22550215 22550215 T G IGLV6-57 Missense_Mutation p.L6R 0.36 deleterious(0) possibly_damaging(0.784) TCGA-GS-A9TY-01 22 23223288 23223288 T C IGLV3-1 Missense_Mutation p.S20P 0.79 deleterious(0.01) benign(0.312) TCGA-GS-A9TY-01 22 23223439 23223439 G A IGLV3-1 Missense_Mutation p.S70N 0.83 tolerated(0.39) benign(0.004) TCGA-GS-A9TY-01 22 23223565 23223565 G C IGLV3-1 Missense_Mutation p.S112T 0.81 tolerated(0.09) benign(0.145) TCGA-GS-A9TY-01 22 23230194 23230194 C T IGLL5 5'UTR 0.68 TCGA-GS-A9TY-01 22 23243200 23243200 T G IGLC2 Missense_Mutation p.S16A 0.71 benign(0.004) TCGA-GS-A9TY-01 22 23243201 23243201 C A IGLC2 Missense_Mutation p.S16Y 0.71 possibly_damaging(0.56) TCGA-GS-A9TY-01 22 23243315 23243315 A G IGLC2 Missense_Mutation p.E54G 0.60 benign(0.056) TCGA-GS-A9TY-01 22 23243360 23243360 G A IGLC2 Missense_Mutation p.S69N 0.85 benign(0.06) TCGA-GS-A9TY-01 22 23243364 23243364 C G IGLC2 Missense_Mutation p.S70R 0.87 probably_damaging(0.998) TCGA-GS-A9TY-01 22 23243415 23243415 C T IGLC2 Silent p.C87C 0.74 TCGA-GS-A9TY-01 22 23243467 23243467 T G IGLC2 Missense_Mutation p.C105G 0.57 possibly_damaging(0.904) TCGA-GS-A9TY-01 22 23243574 23243574 C A IGLC2 3'UTR 0.71 TCGA-GS-A9TY-01 22 26291160 26291160 G A MYO18B Missense_Mutation p.M1527I 0.37 tolerated(0.32) benign(0.209) TCGA-GS-A9TY-01 22 29884844 29884844 C T NEFH Silent p.L405L 0.38 TCGA-GS-A9TY-01 2 119739789 119739789 C A MARCO Missense_Mutation p.A320D 0.24 tolerated(0.29) unknown(0) TCGA-GS-A9TY-01 2 191746033 191746033 T G GLS Missense_Mutation p.S75A 0.54 tolerated_low_confidence(0.32) benign(0.007) TCGA-GS-A9TY-01 2 204304543 204304543 G A RAPH1 Nonsense_Mutation p.R1124* 0.43 TCGA-GS-A9TY-01 2 211481148 211481148 C A CPS1 Missense_Mutation p.A863D 0.36 deleterious(0) possibly_damaging(0.905) TCGA-GS-A9TY-01 2 215976331 215976331 G A ABCA12 Missense_Mutation p.A51V 0.03 tolerated(1) benign(0.008) TCGA-GS-A9TY-01 2 216983862 216983862 G C XRCC5 Missense_Mutation p.K155N 0.44 tolerated(0.06) possibly_damaging(0.556) TCGA-GS-A9TY-01 2 217005920 217005920 A G XRCC5 Missense_Mutation p.N452D 0.77 tolerated(0.12) benign(0.002) TCGA-GS-A9TY-01 2 219883882 219883883 - G CCDC108 Frame_Shift_Ins p.V1165Rfs*8 0.49 TCGA-GS-A9TY-01 2 220437253 220437253 C T INHA Missense_Mutation p.P53S 0.24 tolerated(0.06) benign(0.15) TCGA-GS-A9TY-01 2 233001289 233001289 C T DIS3L2 Silent p.P270P 0.38 TCGA-GS-A9TY-01 2 233759514 233759514 G A NGEF Missense_Mutation p.A314V 0.10 tolerated(0.51) benign(0.031) TCGA-GS-A9TY-01 2 235404502 235404502 C A ARL4C 3'UTR 0.30 TCGA-GS-A9TY-01 2 27680836 27680836 C T IFT172 Missense_Mutation p.V995M 0.23 tolerated(0.07) possibly_damaging(0.664) TCGA-GS-A9TY-01 2 55459724 55459724 T A RPS27A 5'UTR 0.35 TCGA-GS-A9TY-01 2 5834639 5834639 G A SOX11 3'UTR 0.22 TCGA-GS-A9TY-01 2 88402591 88402591 G T SMYD1 Silent p.V301V 0.16 TCGA-GS-A9TY-01 2 95522796 95522796 G T ANKRD20A8P RNA 0.21 TCGA-GS-A9TY-01 3 126261298 126261298 C T CHST13 Silent p.R301R 0.25 TCGA-GS-A9TY-01 3 135871364 135871364 A G MSL2 Missense_Mutation p.I120T 0.42 tolerated(0.27) benign(0.069) TCGA-GS-A9TY-01 3 3182323 3182323 A C TRNT1 Missense_Mutation p.M158L 0.21 tolerated(0.09) benign(0.262) TCGA-GS-A9TY-01 3 49136098 49136098 C A QARS Missense_Mutation p.A631S 0.24 tolerated(0.15) possibly_damaging(0.644) TCGA-GS-A9TY-01 3 52712591 52712591 T C PBRM1 Missense_Mutation p.Y54C 0.59 deleterious(0) probably_damaging(0.97) TCGA-GS-A9TY-01 3 89448713 89448713 A T EPHA3 Intron 0.30 TCGA-GS-A9TY-01 4 11401388 11401388 G A HS3ST1 Missense_Mutation p.A81V 0.43 tolerated(0.51) benign(0.128) TCGA-GS-A9TY-01 4 145032542 145032542 G T GYPA 3'UTR 0.45 TCGA-GS-A9TY-01 4 169212958 169212958 C G DDX60 Missense_Mutation p.A328P 0.43 deleterious(0) probably_damaging(0.986) TCGA-GS-A9TY-01 4 2943962 2943962 T A NOP14 Missense_Mutation p.S670C 0.06 deleterious(0.04) possibly_damaging(0.781) TCGA-GS-A9TY-01 4 41748171 41748171 G A PHOX2B Missense_Mutation p.P200S 0.52 deleterious_low_confidence(0.01) unknown(0) TCGA-GS-A9TY-01 5 124080282 124080282 C T ZNF608 Missense_Mutation p.G134D 0.85 deleterious(0) probably_damaging(0.944) TCGA-GS-A9TY-01 5 140256505 140256505 A C PCDHA12 Missense_Mutation p.D483A 0.45 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-GS-A9TY-01 5 16689930 16689930 C T MYO10 Intron 0.36 TCGA-GS-A9TY-01 5 176795190 176795190 C T RGS14 Nonsense_Mutation p.R258* 0.16 TCGA-GS-A9TY-01 5 45261902 45261902 C T HCN1 3'UTR 0.47 TCGA-GS-A9TY-01 5 52778714 52778714 G C FST Silent p.G30G 0.27 TCGA-GS-A9TY-01 5 54635973 54635973 T G SKIV2L2 Silent p.T217T 0.49 TCGA-GS-A9TY-01 5 64905170 64905170 C T TRIM23 Missense_Mutation p.R315H 0.31 deleterious(0.05) possibly_damaging(0.745) TCGA-GS-A9TY-01 5 66350237 66350237 G A MAST4 Missense_Mutation p.R227Q 0.83 probably_damaging(0.974) TCGA-GS-A9TY-01 5 6737684 6737684 A C PAPD7 Missense_Mutation p.M10L 0.37 tolerated(0.1) possibly_damaging(0.667) TCGA-GS-A9TY-01 5 71495764 71495764 G A MAP1B Silent p.T2194T 0.39 TCGA-GS-A9TY-01 5 74326443 74326443 A C GCNT4 5'UTR 0.40 TCGA-GS-A9TY-01 5 7727359 7727359 T C ADCY2 Missense_Mutation p.I619T 0.35 deleterious(0.03) benign(0.017) TCGA-GS-A9TY-01 6 109764547 109764547 C T SMPD2 Silent p.L269L 0.74 TCGA-GS-A9TY-01 6 109768612 109768612 G T MICAL1 Missense_Mutation p.P673Q 0.09 tolerated(0.12) possibly_damaging(0.602) TCGA-GS-A9TY-01 6 111543327 111543327 G A SLC16A10 Silent p.E479E 0.77 TCGA-GS-A9TY-01 6 125397811 125397811 C T RNF217 Silent p.I138I 0.30 TCGA-GS-A9TY-01 6 134495773 134495773 C A SGK1 Intron 0.68 TCGA-GS-A9TY-01 6 134496887 134496887 G T SGK1 Intron 0.75 TCGA-GS-A9TY-01 6 146755142 146755142 C G GRM1 Missense_Mutation p.P932R 0.92 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-GS-A9TY-01 6 151789707 151789707 T A C6orf211 Nonsense_Mutation p.L263* 0.79 TCGA-GS-A9TY-01 6 151789728 151789728 T A C6orf211 Nonsense_Mutation p.L270* 0.75 TCGA-GS-A9TY-01 6 24522996 24523012 CTTGTGTTTGCTCAAAC - ALDH5A1 Frame_Shift_Del p.C353Ifs*9 0.34 TCGA-GS-A9TY-01 6 24578381 24578381 C T KIAA0319 Missense_Mutation p.V488I 0.29 tolerated(0.79) benign(0.034) TCGA-GS-A9TY-01 6 27100189 27100219 TCGGACACGGCGTGCTTGGCCAACTCCCCAG - HIST1H2BJ Frame_Shift_Del p.P104Rfs*19 0.21 TCGA-GS-A9TY-01 6 27776266 27776266 G A HIST1H2AI Silent p.E93E 0.04 TCGA-GS-A9TY-01 6 34213300 34213300 A G HMGA1 3'UTR 0.21 TCGA-GS-A9TY-01 6 37138571 37138571 G A PIM1 Silent p.E35E 0.25 TCGA-GS-A9TY-01 6 37139092 37139092 C T PIM1 Silent p.A144A 0.21 TCGA-GS-A9TY-01 6 55939040 55939040 G T COL21A1 Missense_Mutation p.P652Q 0.33 tolerated(0.47) benign(0.093) TCGA-GS-A9TY-01 6 56505292 56505292 G A DST Silent p.I176I 0.27 TCGA-GS-A9TY-01 6 7230225 7230225 C T RREB1 Silent p.G631G 0.59 TCGA-GS-A9TY-01 7 100695189 100695189 C A MUC17 Missense_Mutation p.S4350Y 0.41 unknown(0) TCGA-GS-A9TY-01 7 106523531 106523531 A G PIK3CG Missense_Mutation p.T895A 0.42 tolerated(0.81) benign(0.102) TCGA-GS-A9TY-01 7 107603442 107603442 C T LAMB1 Missense_Mutation p.V589I 0.42 deleterious(0.01) benign(0.022) TCGA-GS-A9TY-01 7 121738881 121738881 C G AASS Missense_Mutation p.K482N 0.38 tolerated(0.11) benign(0.016) TCGA-GS-A9TY-01 7 12420309 12420309 G T VWDE Missense_Mutation p.L198M 0.48 deleterious(0.02) benign(0.264) TCGA-GS-A9TY-01 7 139102385 139102385 G - LUC7L2 Frame_Shift_Del p.R370Sfs*42 0.38 TCGA-GS-A9TY-01 7 139734083 139734083 C T PARP12 Missense_Mutation p.R458H 0.35 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TY-01 7 141805676 141805676 G T MGAM Missense_Mutation p.W1853C 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-GS-A9TY-01 7 148514370 148514370 A G EZH2 Missense_Mutation p.Y452H 0.79 deleterious(0.03) probably_damaging(0.959) TCGA-GS-A9TY-01 7 150710303 150710303 G A ATG9B 3'UTR 0.54 TCGA-GS-A9TY-01 7 1787500 1787500 A G ELFN1 3'UTR 0.03 TCGA-GS-A9TY-01 7 20768004 20768004 T A ABCB5 Missense_Mutation p.F931L 0.38 tolerated(0.14) benign(0.113) TCGA-GS-A9TY-01 7 22767218 22767218 T C IL6 Missense_Mutation p.Y59H 0.60 tolerated(0.17) benign(0.076) TCGA-GS-A9TY-01 7 22767230 22767230 G A IL6 Missense_Mutation p.G63S 0.27 tolerated(0.06) benign(0.416) TCGA-GS-A9TY-01 7 2983971 2983971 G A CARD11 Missense_Mutation p.R187W 0.41 tolerated(0.21) probably_damaging(1) TCGA-GS-A9TY-01 7 80374533 80374533 C A SEMA3C Missense_Mutation p.A645S 0.43 tolerated(0.13) benign(0.091) TCGA-GS-A9TY-01 7 889594 889594 G A SUN1 Intron 0.37 TCGA-GS-A9TY-01 8 109796609 109796609 G A TMEM74 Missense_Mutation p.T240M 0.29 deleterious(0) possibly_damaging(0.863) TCGA-GS-A9TY-01 8 143356150 143356150 G A TSNARE1 Missense_Mutation p.R480W 0.17 deleterious(0) probably_damaging(0.981) TCGA-GS-A9TY-01 8 146203042 146203046 ATTAG - ZNF252P RNA 0.62 TCGA-GS-A9TY-01 8 67067878 67067878 G A TRIM55 Intron 0.18 TCGA-GS-A9TY-01 8 77618778 77618778 G T ZFHX4 Nonsense_Mutation p.E819* 0.51 TCGA-GS-A9TY-01 8 93026977 93026977 C T RUNX1T1 Missense_Mutation p.G111R 0.41 deleterious(0) probably_damaging(0.954) TCGA-GS-A9TY-01 9 133814001 133814001 G A FIBCD1 5'UTR 0.16 TCGA-GS-A9TY-01 9 136213400 136213400 C T MED22 Missense_Mutation p.A40T 0.60 deleterious(0.03) probably_damaging(0.934) TCGA-GS-A9TY-01 9 37746410 37746410 C T FRMPD1 Missense_Mutation p.R1461C 0.62 tolerated(0.2) possibly_damaging(0.724) TCGA-GS-A9TY-01 9 78796464 78796464 C G PCSK5 Missense_Mutation p.N718K 0.27 deleterious(0.03) benign(0.099) TCGA-GS-A9TY-01 X 101911714 101911714 A T GPRASP1 Missense_Mutation p.E958V 0.39 deleterious(0) possibly_damaging(0.892) TCGA-GS-A9TY-01 X 106046044 106046044 G A TBC1D8B 5'UTR 0.21 TCGA-GS-A9TY-01 X 106171383 106171383 G C CLDN2 5'UTR 0.24 TCGA-GS-A9TY-01 X 120182459 120182459 G A GLUD2 Silent p.Q307Q 0.57 TCGA-GS-A9TY-01 X 125953772 125953772 T A CXorf64 5'UTR 0.36 TCGA-GS-A9TY-01 X 132351082 132351082 G A TFDP3 Silent p.D402D 0.79 TCGA-GS-A9TY-01 X 134305059 134305059 C T CT55 Missense_Mutation p.G13R 0.75 tolerated(1) benign(0) TCGA-GS-A9TY-01 X 141291747 141291747 G A MAGEC2 Silent p.F9F 0.79 TCGA-GS-A9TY-01 X 16170633 16170633 C T GRPR Silent p.C340C 0.23 TCGA-GS-A9TY-01 X 17750129 17750129 G A NHS Missense_Mutation p.G1480S 0.28 deleterious(0.04) probably_damaging(1) TCGA-GS-A9TY-01 X 18238937 18238937 C T BEND2 5'UTR 0.46 TCGA-GS-A9TY-01 X 35970007 35970007 A T CXorf22 Missense_Mutation p.I325F 0.40 deleterious(0.05) benign(0.275) TCGA-GS-A9TY-01 X 36254910 36254910 A C CXorf30 5'UTR 0.19 TCGA-GS-A9TY-01 X 49961619 49961619 C T AKAP4 Missense_Mutation p.G67S 0.38 tolerated(0.51) benign(0.01) TCGA-GS-A9TY-01 X 57021350 57021350 C A SPIN3 Missense_Mutation p.G11W 0.19 deleterious(0) possibly_damaging(0.759) TCGA-GS-A9TY-01 X 69424307 69424307 G A DGAT2L6 Missense_Mutation p.R267Q 0.21 tolerated(0.2) benign(0.071) TCGA-GS-A9TY-01 X 77112935 77112935 C T MAGT1 Silent p.R182R 0.11 TCGA-GS-A9TY-01 X 85950135 85950135 G T DACH2 Missense_Mutation p.G295V 0.22 tolerated(0.49) benign(0.003) TCGA-GS-A9TY-01 X 91132066 91132066 C T PCDH11X Missense_Mutation p.A276V 0.16 tolerated(0.07) probably_damaging(0.999) TCGA-GS-A9TZ-01 10 100249925 100249925 C T HPSE2 Missense_Mutation p.R450H 0.30 deleterious(0.04) benign(0.01) TCGA-GS-A9TZ-01 10 108389123 108389123 G A SORCS1 Silent p.I833I 0.27 TCGA-GS-A9TZ-01 10 115531832 115531832 G A PLEKHS1 Missense_Mutation p.R213Q 0.29 tolerated(0.06) possibly_damaging(0.511) TCGA-GS-A9TZ-01 10 123325112 123325112 C G FGFR2 Missense_Mutation p.W72C 0.32 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TZ-01 10 124009153 124009153 G A TACC2 Missense_Mutation p.A2919T 0.26 probably_damaging(0.974) TCGA-GS-A9TZ-01 10 124810591 124810591 G A ACADSB Silent p.V339V 0.35 TCGA-GS-A9TZ-01 10 13222489 13222489 G A MCM10 Missense_Mutation p.R272Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-GS-A9TZ-01 10 134230674 134230674 G A PWWP2B 3'UTR 0.14 TCGA-GS-A9TZ-01 10 1405393 1405393 C T ADARB2 Missense_Mutation p.A303T 0.36 tolerated(0.15) benign(0.006) TCGA-GS-A9TZ-01 10 16967409 16967409 A G CUBN Silent p.P2159P 0.13 TCGA-GS-A9TZ-01 10 29751241 29751241 C G SVIL Missense_Mutation p.E2123Q 0.25 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 10 34648142 34648142 G C PARD3 Missense_Mutation p.S667C 0.24 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TZ-01 10 43315714 43315714 G A BMS1 Missense_Mutation p.D871N 0.21 tolerated(0.08) possibly_damaging(0.632) TCGA-GS-A9TZ-01 10 55782695 55782695 A G PCDH15 Missense_Mutation p.V828A 0.25 deleterious(0) possibly_damaging(0.883) TCGA-GS-A9TZ-01 10 55943228 55943228 C T PCDH15 Missense_Mutation p.M522I 0.25 tolerated(0.24) benign(0.348) TCGA-GS-A9TZ-01 10 63662068 63662068 C T ARID5B Nonsense_Mutation p.Q58* 0.15 TCGA-GS-A9TZ-01 10 63809139 63809139 C T ARID5B Intron 0.10 TCGA-GS-A9TZ-01 10 64575715 64575715 G A EGR2 Silent p.I25I 0.29 TCGA-GS-A9TZ-01 10 69695935 69695935 C G HERC4 Missense_Mutation p.D885H 0.26 tolerated(0.1) benign(0.013) TCGA-GS-A9TZ-01 10 69991755 69991755 G A ATOH7 5'UTR 0.14 TCGA-GS-A9TZ-01 10 73848209 73848209 G A SPOCK2 5'UTR 0.29 TCGA-GS-A9TZ-01 10 74033811 74033811 G A DDIT4 5'UTR 0.30 TCGA-GS-A9TZ-01 10 75896531 75896531 T C AP3M1 Missense_Mutation p.I102V 0.34 deleterious(0.04) benign(0.075) TCGA-GS-A9TZ-01 10 76868909 76868909 C T DUSP13 Missense_Mutation p.E3K 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-GS-A9TZ-01 10 88939926 88939926 T G FAM35A Missense_Mutation p.S686R 0.28 tolerated(0.37) benign(0.01) TCGA-GS-A9TZ-01 10 96018781 96018781 C T PLCE1 Missense_Mutation p.R1230C 0.30 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 10 99130677 99130677 C T RRP12 Intron 0.22 TCGA-GS-A9TZ-01 11 100211841 100211841 T A CNTN5 Silent p.P978P 0.09 TCGA-GS-A9TZ-01 11 114027086 114027086 C T ZBTB16 Silent p.Y432Y 0.17 TCGA-GS-A9TZ-01 11 118780644 118780644 C T BCL9L Missense_Mutation p.R2K 0.44 benign(0.067) TCGA-GS-A9TZ-01 11 1270786 1270786 G A MUC5B Missense_Mutation p.G4226S 0.56 benign(0.097) TCGA-GS-A9TZ-01 11 1272843 1272843 C T MUC5B Silent p.S4911S 0.48 TCGA-GS-A9TZ-01 11 13514335 13514335 G A PTH Missense_Mutation p.S23L 0.49 tolerated(0.34) benign(0.002) TCGA-GS-A9TZ-01 11 14989251 14989251 A C CALCA 3'Flank 0.17 TCGA-GS-A9TZ-01 11 17035910 17035910 C T PLEKHA7 Silent p.E13E 0.50 TCGA-GS-A9TZ-01 11 26584710 26584710 G A MUC15 Missense_Mutation p.T293M 0.59 tolerated(0.06) benign(0.011) TCGA-GS-A9TZ-01 11 56258097 56258097 G T OR5M8 Missense_Mutation p.F250L 0.47 deleterious(0) probably_damaging(0.973) TCGA-GS-A9TZ-01 11 56380719 56380719 G A OR5M1 Missense_Mutation p.S87L 0.58 deleterious(0.04) possibly_damaging(0.721) TCGA-GS-A9TZ-01 11 62284325 62284325 A T AHNAK Missense_Mutation p.L5855Q 0.56 probably_damaging(0.943) TCGA-GS-A9TZ-01 11 63137598 63137598 C A SLC22A9 Missense_Mutation p.L24I 0.51 tolerated(0.24) benign(0.117) TCGA-GS-A9TZ-01 11 64121559 64121559 G A CCDC88B Missense_Mutation p.G1339E 0.49 tolerated(0.09) possibly_damaging(0.83) TCGA-GS-A9TZ-01 11 67168324 67168324 C G PPP1CA Missense_Mutation p.S96T 0.20 deleterious_low_confidence(0.04) benign(0.022) TCGA-GS-A9TZ-01 11 67176563 67176563 A G TBC1D10C Missense_Mutation p.I318V 0.45 tolerated(0.26) benign(0.008) TCGA-GS-A9TZ-01 11 71949157 71949157 C T INPPL1 Silent p.I1208I 0.56 TCGA-GS-A9TZ-01 11 78516393 78516393 G A TENM4 Missense_Mutation p.P708L 0.12 tolerated(0.7) benign(0.004) TCGA-GS-A9TZ-01 11 8016899 8016899 C G EIF3F Silent p.L327L 0.55 TCGA-GS-A9TZ-01 11 86782566 86782566 A T TMEM135 Nonsense_Mutation p.K91* 0.48 TCGA-GS-A9TZ-01 12 10224058 10224058 G A CLEC1A Silent p.I239I 0.06 TCGA-GS-A9TZ-01 12 10233999 10233999 G C CLEC1A Nonsense_Mutation p.Y76* 0.31 TCGA-GS-A9TZ-01 12 10539559 10539559 A - KLRK1 Frame_Shift_Del p.S31Qfs*11 0.18 TCGA-GS-A9TZ-01 12 109616950 109616950 C T ACACB Missense_Mutation p.R499C 0.12 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TZ-01 12 109858795 109858795 A - MYO1H Frame_Shift_Del p.N522Tfs*9 0.08 TCGA-GS-A9TZ-01 12 113495933 113495933 T A DTX1 5'UTR 0.22 TCGA-GS-A9TZ-01 12 120118167 120118167 A G PRKAB1 3'UTR 0.48 TCGA-GS-A9TZ-01 12 120750463 120750463 C T SIRT4 Silent p.F234F 0.05 TCGA-GS-A9TZ-01 12 12966364 12966364 G A DDX47 Silent p.E21E 0.23 TCGA-GS-A9TZ-01 12 12966365 12966365 G C DDX47 Missense_Mutation p.E22Q 0.23 tolerated(0.32) benign(0.005) TCGA-GS-A9TZ-01 12 132498342 132498342 G A EP400 Silent p.L1269L 0.41 TCGA-GS-A9TZ-01 12 133151086 133151086 G A FBRSL1 Missense_Mutation p.G589E 0.14 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 12 15677869 15677869 T C PTPRO Silent p.V671V 0.38 TCGA-GS-A9TZ-01 12 21926491 21926491 C G KCNJ8 Missense_Mutation p.E20D 0.20 tolerated(0.68) benign(0.074) TCGA-GS-A9TZ-01 12 31585991 31585991 A T DENND5B Intron 0.10 TCGA-GS-A9TZ-01 12 39047792 39047792 A C CPNE8 Silent p.A529A 0.11 TCGA-GS-A9TZ-01 12 42835345 42835345 A C PPHLN1 Intron 0.30 TCGA-GS-A9TZ-01 12 4919231 4919231 G A KCNA6 Silent p.T8T 0.25 TCGA-GS-A9TZ-01 12 53683328 53683328 C T ESPL1 Missense_Mutation p.P1688L 0.41 deleterious(0.02) benign(0.194) TCGA-GS-A9TZ-01 12 56554083 56554083 A - MYL6 Frame_Shift_Del p.N136Mfs*10 0.13 TCGA-GS-A9TZ-01 12 57118252 57118252 C T NACA Silent p.Q18Q 0.46 TCGA-GS-A9TZ-01 12 57407443 57407443 G A TAC3 Missense_Mutation p.L43F 0.50 tolerated(0.08) possibly_damaging(0.846) TCGA-GS-A9TZ-01 12 57492825 57492825 G A STAT6 Missense_Mutation p.P643L 0.24 deleterious(0.01) possibly_damaging(0.628) TCGA-GS-A9TZ-01 12 57496658 57496658 T C STAT6 Missense_Mutation p.N420S 0.14 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TZ-01 12 58139640 58139640 T C TSPAN31 Missense_Mutation p.I59T 0.49 deleterious(0.02) probably_damaging(1) TCGA-GS-A9TZ-01 12 58165793 58165793 G A METTL1 Missense_Mutation p.A25V 0.15 deleterious(0) probably_damaging(0.983) TCGA-GS-A9TZ-01 12 64587914 64587914 A T C12orf66 Missense_Mutation p.V349E 0.12 deleterious(0) probably_damaging(0.951) TCGA-GS-A9TZ-01 12 65564345 65564345 G T LEMD3 Silent p.A323A 0.48 TCGA-GS-A9TZ-01 12 70724111 70724111 A G CNOT2 Missense_Mutation p.Q144R 0.39 tolerated(0.08) possibly_damaging(0.813) TCGA-GS-A9TZ-01 12 70931949 70931949 C T PTPRB Missense_Mutation p.A1978T 0.12 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TZ-01 12 73046814 73046814 G A TRHDE Silent p.L909L 0.44 TCGA-GS-A9TZ-01 12 77243231 77243231 T G ZDHHC17 Missense_Mutation p.S581A 0.12 tolerated(0.87) benign(0.004) TCGA-GS-A9TZ-01 12 85264396 85264396 A T SLC6A15 Missense_Mutation p.H452Q 0.43 tolerated(0.59) probably_damaging(0.999) TCGA-GS-A9TZ-01 12 9089488 9089488 A C PHC1 Missense_Mutation p.Y802S 0.18 deleterious(0) unknown(0) TCGA-GS-A9TZ-01 12 94702572 94702572 C A CCDC41 3'UTR 0.14 TCGA-GS-A9TZ-01 12 94702622 94702622 T C CCDC41 Silent p.K691K 0.13 TCGA-GS-A9TZ-01 12 98989528 98989528 G T SLC25A3 Intron 0.40 TCGA-GS-A9TZ-01 13 101944374 101944374 C T NALCN Silent p.S338S 0.30 TCGA-GS-A9TZ-01 13 113724398 113724398 G A MCF2L Missense_Mutation p.E303K 0.41 deleterious(0) benign(0.35) TCGA-GS-A9TZ-01 13 25285537 25285537 C T ATP12A Silent p.L1033L 0.19 TCGA-GS-A9TZ-01 13 28886173 28886173 A C FLT1 Missense_Mutation p.L1150R 0.24 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 13 32906689 32906689 G A BRCA2 Silent p.V358V 0.15 TCGA-GS-A9TZ-01 13 39454750 39454750 C T FREM2 Silent p.V3112V 0.12 TCGA-GS-A9TZ-01 13 43918835 43918835 C T ENOX1 Missense_Mutation p.R292Q 0.32 deleterious(0.03) benign(0.096) TCGA-GS-A9TZ-01 13 70681527 70681527 C G KLHL1 Missense_Mutation p.R102T 0.17 tolerated_low_confidence(0.31) benign(0.041) TCGA-GS-A9TZ-01 13 80911241 80911241 G T SPRY2 Silent p.I200I 0.18 TCGA-GS-A9TZ-01 14 100182533 100182533 G T CYP46A1 Missense_Mutation p.A302S 0.28 deleterious(0.01) possibly_damaging(0.89) TCGA-GS-A9TZ-01 14 102452967 102452967 C T DYNC1H1 Missense_Mutation p.S802F 0.31 possibly_damaging(0.77) TCGA-GS-A9TZ-01 14 105617357 105617357 G A JAG2 Missense_Mutation p.P451L 0.20 deleterious(0.02) probably_damaging(0.924) TCGA-GS-A9TZ-01 14 106066350 106066350 C T IGHE 3'UTR 0.26 TCGA-GS-A9TZ-01 14 106066489 106066489 C G IGHE Missense_Mutation p.D401H 0.15 tolerated(0.15) benign(0.033) TCGA-GS-A9TZ-01 14 106067945 106067945 C T IGHE Missense_Mutation p.V41M 0.19 deleterious(0.04) probably_damaging(0.946) TCGA-GS-A9TZ-01 14 106067983 106067983 C A IGHE Missense_Mutation p.G28V 0.12 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 14 106068024 106068024 G T IGHE Nonsense_Mutation p.C14* 0.14 TCGA-GS-A9TZ-01 14 106091009 106091009 C G IGHG4 Missense_Mutation p.S263T 0.08 tolerated(0.43) benign(0.22) TCGA-GS-A9TZ-01 14 107178833 107178833 T A IGHV2-70 Missense_Mutation p.Y115F 0.11 deleterious(0.04) benign(0.133) TCGA-GS-A9TZ-01 14 107178963 107178963 T C IGHV2-70 Missense_Mutation p.I72V 0.09 tolerated(0.11) benign(0.007) TCGA-GS-A9TZ-01 14 21109391 21109391 C T OR6S1 Missense_Mutation p.G154R 0.28 deleterious(0.02) probably_damaging(1) TCGA-GS-A9TZ-01 14 24030792 24030792 C T AP1G2 Missense_Mutation p.D596N 0.08 tolerated(0.58) benign(0.003) TCGA-GS-A9TZ-01 14 35873772 35873772 C G NFKBIA Missense_Mutation p.D27H 0.11 deleterious(0) possibly_damaging(0.806) TCGA-GS-A9TZ-01 14 38310664 38310664 C T TTC6 Silent p.F1771F 0.31 TCGA-GS-A9TZ-01 14 39591663 39591663 G A GEMIN2 Silent p.K145K 0.25 TCGA-GS-A9TZ-01 14 39819363 39819363 C A CTAGE5 Missense_Mutation p.F775L 0.36 tolerated(0.42) benign(0.007) TCGA-GS-A9TZ-01 14 50583173 50583173 T C VCPKMT Missense_Mutation p.Y33C 0.35 tolerated(0.18) benign(0.004) TCGA-GS-A9TZ-01 14 50583287 50583287 A G VCPKMT 5'Flank 0.37 TCGA-GS-A9TZ-01 14 59113643 59113643 G T DACT1 Missense_Mutation p.G768W 0.10 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 14 63175121 63175121 C T KCNH5 Missense_Mutation p.R691Q 0.17 deleterious(0.01) benign(0.054) TCGA-GS-A9TZ-01 14 65016722 65016722 C T PPP1R36 Missense_Mutation p.R3W 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.453) TCGA-GS-A9TZ-01 14 73614730 73614730 G A PSEN1 Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0) benign(0.001) TCGA-GS-A9TZ-01 14 75248627 75248627 T C YLPM1 Silent p.A627A 0.16 TCGA-GS-A9TZ-01 14 77275546 77275546 G T ANGEL1 Missense_Mutation p.L169M 0.08 tolerated(0.26) benign(0.013) TCGA-GS-A9TZ-01 14 86090550 86090550 T G FLRT2 3'UTR 0.12 TCGA-GS-A9TZ-01 14 86093278 86093278 C A FLRT2 3'UTR 0.21 TCGA-GS-A9TZ-01 14 91367011 91367011 G A RPS6KA5 Missense_Mutation p.H397Y 0.28 tolerated(0.95) benign(0.001) TCGA-GS-A9TZ-01 14 91701470 91701470 G C GPR68 5'UTR 0.42 TCGA-GS-A9TZ-01 14 94594298 94594298 G A IFI27L2 Silent p.I77I 0.14 TCGA-GS-A9TZ-01 14 99641876 99641876 C T BCL11B Missense_Mutation p.G433S 0.47 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 15 22382649 22382649 C G OR4N4 Silent p.L59L 0.14 TCGA-GS-A9TZ-01 15 24927207 24927207 C G NPAP1 3'UTR 0.05 TCGA-GS-A9TZ-01 15 43022925 43022925 C T CDAN1 Missense_Mutation p.R682Q 0.33 tolerated(1) benign(0.001) TCGA-GS-A9TZ-01 15 45814162 45814162 C G SLC30A4 Missense_Mutation p.G131R 0.29 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 15 45814226 45814226 C G SLC30A4 Missense_Mutation p.K109N 0.19 deleterious(0.03) possibly_damaging(0.611) TCGA-GS-A9TZ-01 15 45814228 45814228 T C SLC30A4 Missense_Mutation p.K109E 0.20 deleterious(0.04) benign(0.26) TCGA-GS-A9TZ-01 15 45814252 45814252 G T SLC30A4 Missense_Mutation p.Q101K 0.19 tolerated(0.52) benign(0) TCGA-GS-A9TZ-01 15 45814311 45814311 A T SLC30A4 Nonsense_Mutation p.L81* 0.27 TCGA-GS-A9TZ-01 15 45814493 45814493 C T SLC30A4 Silent p.P20P 0.40 TCGA-GS-A9TZ-01 15 45898760 45898760 G A BLOC1S6 3'UTR 0.28 TCGA-GS-A9TZ-01 15 53901783 53901783 T A WDR72 Missense_Mutation p.N960I 0.11 deleterious(0.01) possibly_damaging(0.482) TCGA-GS-A9TZ-01 15 54860103 54860103 G A UNC13C Missense_Mutation p.D2022N 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-GS-A9TZ-01 15 62990997 62990997 G A TLN2 Missense_Mutation p.M506I 0.24 tolerated(0.76) benign(0.003) TCGA-GS-A9TZ-01 15 70959921 70959926 CTTTAA - UACA In_Frame_Del p.L1033_K1034del 0.21 TCGA-GS-A9TZ-01 15 70961044 70961044 G A UACA Missense_Mutation p.S660L 0.27 tolerated(0.1) benign(0.341) TCGA-GS-A9TZ-01 15 72338093 72338093 A C MYO9A Missense_Mutation p.I271S 0.38 deleterious(0.01) possibly_damaging(0.853) TCGA-GS-A9TZ-01 15 73991974 73991974 C T CD276 5'UTR 0.29 TCGA-GS-A9TZ-01 15 74708989 74708989 A T SEMA7A Missense_Mutation p.F243Y 0.27 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 15 75762326 75762326 G T PTPN9 Silent p.R458R 0.26 TCGA-GS-A9TZ-01 15 76640806 76640806 C T SCAPER 3'UTR 0.29 TCGA-GS-A9TZ-01 15 80263370 80263370 C T BCL2A1 Missense_Mutation p.S31N 0.17 tolerated(0.14) benign(0.012) TCGA-GS-A9TZ-01 15 81271791 81271791 G A MESDC2 Silent p.I158I 0.30 TCGA-GS-A9TZ-01 15 83807853 83807853 T C HDGFRP3 3'UTR 0.31 TCGA-GS-A9TZ-01 15 90976986 90976986 A G IQGAP1 Silent p.R142R 0.27 TCGA-GS-A9TZ-01 15 93552523 93552523 C G CHD2 Nonsense_Mutation p.S1521* 0.35 TCGA-GS-A9TZ-01 16 10032211 10032211 G A GRIN2A Silent p.I204I 0.09 TCGA-GS-A9TZ-01 16 11348767 11348767 T C SOCS1 Missense_Mutation p.N190S 0.24 tolerated(0.25) benign(0.243) TCGA-GS-A9TZ-01 16 11348807 11348807 G A SOCS1 Silent p.L177L 0.30 TCGA-GS-A9TZ-01 16 11348880 11348880 C G SOCS1 Missense_Mutation p.E152D 0.09 tolerated(0.07) benign(0.43) TCGA-GS-A9TZ-01 16 11348889 11348889 C G SOCS1 Missense_Mutation p.E149D 0.27 tolerated(0.3) benign(0.022) TCGA-GS-A9TZ-01 16 11348920 11348920 C T SOCS1 Missense_Mutation p.G139D 0.32 deleterious(0.01) possibly_damaging(0.903) TCGA-GS-A9TZ-01 16 11348988 11348988 G A SOCS1 Silent p.S116S 0.25 TCGA-GS-A9TZ-01 16 11349102 11349103 TC - SOCS1 Frame_Shift_Del p.G78Vfs*38 0.39 TCGA-GS-A9TZ-01 16 11349174 11349174 G A SOCS1 Silent p.H54H 0.55 TCGA-GS-A9TZ-01 16 11349233 11349233 C T SOCS1 Missense_Mutation p.A35T 0.53 tolerated(0.58) benign(0.007) TCGA-GS-A9TZ-01 16 2094643 2094643 G A NTHL1 Silent p.V179V 0.34 TCGA-GS-A9TZ-01 16 2161349 2161349 G A PKD1 Silent p.T1273T 0.36 TCGA-GS-A9TZ-01 16 223610 223610 C T HBA2 3'UTR 0.31 TCGA-GS-A9TZ-01 16 2239543 2239543 C T CASKIN1 Silent p.A89A 0.33 TCGA-GS-A9TZ-01 16 23614908 23614908 C T PALB2 Missense_Mutation p.G1145S 0.19 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 16 28187332 28187332 G A XPO6 Missense_Mutation p.H98Y 0.08 tolerated(0.05) benign(0.069) TCGA-GS-A9TZ-01 16 30102525 30102525 C T TBX6 5'UTR 0.30 TCGA-GS-A9TZ-01 16 30199792 30199792 C G CORO1A Silent p.L392L 0.41 TCGA-GS-A9TZ-01 16 30976634 30976634 G C SETD1A Missense_Mutation p.R524T 0.42 benign(0.134) TCGA-GS-A9TZ-01 16 31502228 31502228 G A C16orf58 Silent p.T445T 0.28 TCGA-GS-A9TZ-01 16 425420 425420 C T TMEM8A Missense_Mutation p.E414K 0.18 tolerated(0.43) benign(0.02) TCGA-GS-A9TZ-01 16 46706252 46706252 C T VPS35 Silent p.E431E 0.09 TCGA-GS-A9TZ-01 16 5141837 5141837 C T FAM86A Silent p.L100L 0.34 TCGA-GS-A9TZ-01 16 57918045 57918045 C T CNGB1 3'UTR 0.27 TCGA-GS-A9TZ-01 16 71683436 71683436 A T PHLPP2 Nonsense_Mutation p.L1110* 0.23 TCGA-GS-A9TZ-01 16 71971234 71971234 G A PKD1L3 RNA 0.25 TCGA-GS-A9TZ-01 16 732613 732613 G A JMJD8 3'UTR 0.26 TCGA-GS-A9TZ-01 16 735417 735417 G C WDR24 Nonsense_Mutation p.S620* 0.20 TCGA-GS-A9TZ-01 16 736945 736945 G A WDR24 Silent p.I377I 0.30 TCGA-GS-A9TZ-01 16 75512714 75512714 G A CHST6 Missense_Mutation p.P338L 0.33 deleterious(0.02) possibly_damaging(0.794) TCGA-GS-A9TZ-01 16 75563924 75563924 G A CHST5 Missense_Mutation p.S120F 0.39 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 16 76389398 76389398 A C CNTNAP4 Missense_Mutation p.D102A 0.29 deleterious(0.01) possibly_damaging(0.61) TCGA-GS-A9TZ-01 16 84228066 84228066 C T ADAD2 Missense_Mutation p.S218L 0.18 deleterious(0) possibly_damaging(0.867) TCGA-GS-A9TZ-01 16 85942692 85942692 G A IRF8 Missense_Mutation p.D91N 0.36 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TZ-01 16 85942775 85942775 A G IRF8 Silent p.Q118Q 0.35 TCGA-GS-A9TZ-01 16 85942884 85942884 T C IRF8 Intron 0.25 TCGA-GS-A9TZ-01 16 85942897 85942897 A C IRF8 Intron 0.25 TCGA-GS-A9TZ-01 16 85942919 85942919 A G IRF8 Intron 0.27 TCGA-GS-A9TZ-01 16 86588820 86588820 G T MTHFSD 5'Flank 0.37 TCGA-GS-A9TZ-01 17 11511499 11511499 G A DNAH9 Missense_Mutation p.M157I 0.12 benign(0.001) TCGA-GS-A9TZ-01 17 11608409 11608409 A C DNAH9 Missense_Mutation p.H1820P 0.26 possibly_damaging(0.883) TCGA-GS-A9TZ-01 17 18259246 18259246 G A SHMT1 Missense_Mutation p.S17L 0.12 deleterious(0.04) benign(0.001) TCGA-GS-A9TZ-01 17 26919738 26919738 G A SPAG5 Missense_Mutation p.A175V 0.36 tolerated_low_confidence(0.08) benign(0.077) TCGA-GS-A9TZ-01 17 37557627 37557627 T G FBXL20 Missense_Mutation p.K10T 0.30 tolerated(0.16) benign(0.021) TCGA-GS-A9TZ-01 17 37627743 37627743 C T CDK12 Missense_Mutation p.P553L 0.35 probably_damaging(0.927) TCGA-GS-A9TZ-01 17 38073592 38073592 C T GSDMB Intron 0.34 TCGA-GS-A9TZ-01 17 39092714 39092714 T C KRT23 Missense_Mutation p.T48A 0.13 tolerated(0.51) benign(0.004) TCGA-GS-A9TZ-01 17 39846413 39846413 G A EIF1 Missense_Mutation p.R90H 0.14 tolerated(0.08) benign(0.016) TCGA-GS-A9TZ-01 17 40666448 40666448 C T ATP6V0A1 Missense_Mutation p.S798L 0.14 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TZ-01 17 41245531 41245531 C T BRCA1 Missense_Mutation p.E673K 0.18 deleterious(0) probably_damaging(0.962) TCGA-GS-A9TZ-01 17 45699275 45699275 C G NPEPPS Missense_Mutation p.P917A 0.23 tolerated_low_confidence(0.13) benign(0.001) TCGA-GS-A9TZ-01 17 48267044 48267044 G A COL1A1 Missense_Mutation p.P888L 0.13 unknown(0) TCGA-GS-A9TZ-01 17 4838035 4838035 G A GP1BA 3'UTR 0.11 TCGA-GS-A9TZ-01 17 51900705 51900705 C T KIF2B Missense_Mutation p.S104L 0.24 tolerated(0.21) benign(0.091) TCGA-GS-A9TZ-01 17 60501274 60501274 C T METTL2A Missense_Mutation p.S4F 0.16 tolerated_low_confidence(0.07) benign(0.326) TCGA-GS-A9TZ-01 17 61776712 61776712 C T LIMD2 Intron 0.29 TCGA-GS-A9TZ-01 17 61995272 61995272 G A GH1 Missense_Mutation p.L102F 0.25 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 17 6941796 6941796 C T SLC16A13 Silent p.L223L 0.42 TCGA-GS-A9TZ-01 17 71228291 71228291 G A FAM104A Missense_Mutation p.S52F 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.882) TCGA-GS-A9TZ-01 17 72353399 72353399 G A BTBD17 Silent p.H278H 0.40 TCGA-GS-A9TZ-01 17 73259719 73259719 T G MRPS7 Intron 0.18 TCGA-GS-A9TZ-01 17 7348422 7348422 A G CHRNB1 5'UTR 0.25 TCGA-GS-A9TZ-01 17 75878619 75878619 C T FLJ45079 5'UTR 0.29 TCGA-GS-A9TZ-01 17 7662326 7662326 G A DNAH2 Missense_Mutation p.E778K 0.29 benign(0.407) TCGA-GS-A9TZ-01 17 77043849 77043849 C T C1QTNF1 Silent p.Y175Y 0.39 TCGA-GS-A9TZ-01 17 7832622 7832622 C T KCNAB3 Silent p.P44P 0.41 TCGA-GS-A9TZ-01 17 79479257 79479257 C T ACTG1 Splice_Site p.X41_splice 0.11 TCGA-GS-A9TZ-01 17 79663744 79663744 G A HGS Silent p.A558A 0.34 TCGA-GS-A9TZ-01 17 79791648 79791648 T C PPP1R27 Missense_Mutation p.Y141C 0.31 tolerated(0.23) benign(0) TCGA-GS-A9TZ-01 17 80046669 80046669 G T FASN Missense_Mutation p.F796L 0.38 tolerated(0.15) benign(0.323) TCGA-GS-A9TZ-01 17 9515643 9515643 G A WDR16 Missense_Mutation p.G291D 0.31 deleterious(0.02) benign(0.323) TCGA-GS-A9TZ-01 18 12720538 12720538 C - PSMG2 Frame_Shift_Del p.M147Cfs*9 0.11 TCGA-GS-A9TZ-01 18 12884137 12884137 G A PTPN2 Missense_Mutation p.P2S 0.18 tolerated(0.95) benign(0.001) TCGA-GS-A9TZ-01 18 2544748 2544748 G A METTL4 Missense_Mutation p.S362L 0.26 deleterious(0.02) benign(0.315) TCGA-GS-A9TZ-01 18 65179192 65179192 G T DSEL Missense_Mutation p.T895K 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-GS-A9TZ-01 18 7231257 7231257 C T LRRC30 Missense_Mutation p.R41W 0.26 deleterious(0) probably_damaging(0.941) TCGA-GS-A9TZ-01 19 1081892 1081892 G A HMHA1 Missense_Mutation p.E833K 0.30 deleterious(0) possibly_damaging(0.642) TCGA-GS-A9TZ-01 19 11134230 11134230 C T SMARCA4 Missense_Mutation p.R966W 0.20 probably_damaging(0.998) TCGA-GS-A9TZ-01 19 11325005 11325005 C T DOCK6 Silent p.Q1428Q 0.30 TCGA-GS-A9TZ-01 19 1235089 1235089 G T C19orf26 Missense_Mutation p.F122L 0.23 deleterious(0.03) benign(0.05) TCGA-GS-A9TZ-01 19 12692409 12692409 C T ZNF490 Silent p.V160V 0.26 TCGA-GS-A9TZ-01 19 15366921 15366921 G A BRD4 Missense_Mutation p.P569S 0.25 possibly_damaging(0.641) TCGA-GS-A9TZ-01 19 18174694 18174694 A T IL12RB1 Missense_Mutation p.F537Y 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-GS-A9TZ-01 19 18965440 18965440 G A UPF1 Missense_Mutation p.R396Q 0.27 deleterious(0) benign(0.04) TCGA-GS-A9TZ-01 19 21477477 21477477 T G ZNF708 Missense_Mutation p.Q97H 0.24 deleterious(0) benign(0.321) TCGA-GS-A9TZ-01 19 22155873 22155873 G T ZNF208 Missense_Mutation p.H655N 0.24 deleterious(0) possibly_damaging(0.67) TCGA-GS-A9TZ-01 19 22193602 22193602 G T ZNF208 5'UTR 0.31 TCGA-GS-A9TZ-01 19 22193603 22193603 G T ZNF208 5'UTR 0.31 TCGA-GS-A9TZ-01 19 22271296 22271296 G A ZNF257 Silent p.K248K 0.26 TCGA-GS-A9TZ-01 19 2290848 2290848 C T LINGO3 Missense_Mutation p.E310K 0.31 deleterious(0.03) possibly_damaging(0.638) TCGA-GS-A9TZ-01 19 23328123 23328123 G - ZNF730 Frame_Shift_Del p.D93Ifs*8 0.15 TCGA-GS-A9TZ-01 19 39660292 39660292 G A PAK4 Silent p.T33T 0.24 TCGA-GS-A9TZ-01 19 40317311 40317311 C T DYRK1B Splice_Site p.X471_splice 0.28 TCGA-GS-A9TZ-01 19 40971624 40971624 C T BLVRB 5'UTR 0.32 TCGA-GS-A9TZ-01 19 41895726 41895726 A G EXOSC5 Missense_Mutation p.C157R 0.33 deleterious(0) probably_damaging(0.994) TCGA-GS-A9TZ-01 19 42381447 42381447 T A CD79A Missense_Mutation p.Y25N 0.22 tolerated(0.31) benign(0.002) TCGA-GS-A9TZ-01 19 42410744 42410744 G A ARHGEF1 Missense_Mutation p.S891N 0.14 tolerated(0.12) benign(0.005) TCGA-GS-A9TZ-01 19 42595560 42595560 G A POU2F2 3'UTR 0.23 TCGA-GS-A9TZ-01 19 44661323 44661323 C T ZNF234 Missense_Mutation p.S385L 0.23 deleterious(0) probably_damaging(0.928) TCGA-GS-A9TZ-01 19 44661732 44661732 C T ZNF234 Silent p.F521F 0.22 TCGA-GS-A9TZ-01 19 49224165 49224165 C A RASIP1 Missense_Mutation p.D928Y 0.14 deleterious(0.05) probably_damaging(0.998) TCGA-GS-A9TZ-01 19 4929348 4929348 C G MIR4747 5'Flank 0.36 TCGA-GS-A9TZ-01 19 51169477 51169477 C T SHANK1 Missense_Mutation p.E1914K 0.27 unknown(0) TCGA-GS-A9TZ-01 19 52394595 52394595 C G ZNF649 Missense_Mutation p.S265T 0.27 tolerated(0.29) possibly_damaging(0.659) TCGA-GS-A9TZ-01 19 52497677 52497677 G C ZNF615 Missense_Mutation p.Q229E 0.26 tolerated(0.19) benign(0.318) TCGA-GS-A9TZ-01 19 52618943 52618943 G A ZNF616 Missense_Mutation p.P492S 0.30 deleterious(0.04) possibly_damaging(0.809) TCGA-GS-A9TZ-01 19 52659320 52659320 G A ZNF836 Missense_Mutation p.S539L 0.34 tolerated(0.06) probably_damaging(0.942) TCGA-GS-A9TZ-01 19 53643919 53643919 C T ZNF347 Missense_Mutation p.R722H 0.22 tolerated(0.17) benign(0.02) TCGA-GS-A9TZ-01 19 55221540 55221540 G A AC098784.2 3'Flank 0.24 TCGA-GS-A9TZ-01 19 55423582 55423582 G A NCR1 Silent p.Q243Q 0.39 TCGA-GS-A9TZ-01 19 57646662 57646662 G C ZIM3 Missense_Mutation p.S348C 0.27 deleterious(0.02) benign(0.014) TCGA-GS-A9TZ-01 19 57967400 57967400 G T VN1R1 Missense_Mutation p.P152H 0.25 deleterious(0) probably_damaging(0.992) TCGA-GS-A9TZ-01 19 58427894 58427894 T C ZNF417 5'UTR 0.32 TCGA-GS-A9TZ-01 19 58453610 58453610 G A ZNF256 Missense_Mutation p.A189V 0.22 tolerated(0.05) benign(0.013) TCGA-GS-A9TZ-01 19 58718488 58718488 G A ZNF274 Nonsense_Mutation p.W219* 0.25 TCGA-GS-A9TZ-01 19 59069718 59069718 T C UBE2M Missense_Mutation p.K11E 0.14 tolerated(0.1) benign(0.18) TCGA-GS-A9TZ-01 19 608077 608077 C T HCN2 Silent p.T444T 0.31 TCGA-GS-A9TZ-01 19 6426324 6426324 G A SLC25A41 3'UTR 0.29 TCGA-GS-A9TZ-01 1 100623819 100623819 C A LRRC39 Missense_Mutation p.V161F 0.24 tolerated(0.71) possibly_damaging(0.835) TCGA-GS-A9TZ-01 1 109265194 109265194 C T FNDC7 Missense_Mutation p.S279L 0.28 tolerated(0.22) benign(0.206) TCGA-GS-A9TZ-01 1 109289364 109289364 C T STXBP3 Missense_Mutation p.A2V 0.31 tolerated_low_confidence(0.09) benign(0.003) TCGA-GS-A9TZ-01 1 113126634 113126634 C A ST7L Missense_Mutation p.Q272H 0.28 tolerated(0.05) possibly_damaging(0.863) TCGA-GS-A9TZ-01 1 117113593 117113593 A C CD58 Translation_Start_Site p.M1? 0.23 deleterious(0) probably_damaging(0.991) TCGA-GS-A9TZ-01 1 1273785 1273785 G A DVL1 Silent p.H432H 0.32 TCGA-GS-A9TZ-01 1 14105995 14105995 T C PRDM2 Missense_Mutation p.Y569H 0.17 probably_damaging(0.961) TCGA-GS-A9TZ-01 1 1452623 1452623 C T ATAD3A Missense_Mutation p.T120I 0.39 tolerated(0.1) benign(0.001) TCGA-GS-A9TZ-01 1 145281475 145281475 C T NOTCH2NL Silent p.F135F 0.06 TCGA-GS-A9TZ-01 1 145537774 145537774 C T ITGA10 Missense_Mutation p.S871F 0.22 deleterious(0.03) possibly_damaging(0.595) TCGA-GS-A9TZ-01 1 152286991 152286991 C A FLG Missense_Mutation p.R124I 0.04 possibly_damaging(0.582) TCGA-GS-A9TZ-01 1 155013976 155013976 C G DCST1 Missense_Mutation p.T212S 0.32 tolerated(0.26) benign(0.001) TCGA-GS-A9TZ-01 1 155156281 155156281 C T TRIM46 Missense_Mutation p.P632L 0.25 deleterious(0.05) probably_damaging(0.934) TCGA-GS-A9TZ-01 1 155184403 155184403 T G MTX1 3'Flank 0.25 TCGA-GS-A9TZ-01 1 155631053 155631053 C T YY1AP1 Intron 0.26 TCGA-GS-A9TZ-01 1 155642512 155642512 C T YY1AP1 Missense_Mutation p.G279E 0.22 tolerated(0.07) probably_damaging(0.944) TCGA-GS-A9TZ-01 1 156502774 156502774 C T IQGAP3 Silent p.L1367L 0.29 TCGA-GS-A9TZ-01 1 1565043 1565043 G A MIB2 Missense_Mutation p.C978Y 0.12 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 1 1586900 1586900 C T CDK11B Silent p.E50E 0.10 TCGA-GS-A9TZ-01 1 159826429 159826429 C T VSIG8 Silent p.L219L 0.30 TCGA-GS-A9TZ-01 1 160783595 160783595 C T LY9 Silent p.T208T 0.18 TCGA-GS-A9TZ-01 1 167599497 167599497 C T RCSD1 5'UTR 0.29 TCGA-GS-A9TZ-01 1 186077619 186077619 G A HMCN1 Missense_Mutation p.E3627K 0.18 possibly_damaging(0.462) TCGA-GS-A9TZ-01 1 186648465 186648465 T A PTGS2 Missense_Mutation p.N53I 0.16 deleterious(0) possibly_damaging(0.867) TCGA-GS-A9TZ-01 1 197093397 197093397 C T ASPM Missense_Mutation p.S1078N 0.26 tolerated(0.75) benign(0.001) TCGA-GS-A9TZ-01 1 207095243 207095244 - A FAIM3 5'UTR 0.21 TCGA-GS-A9TZ-01 1 208216538 208216538 C T PLXNA2 Silent p.E1295E 0.13 TCGA-GS-A9TZ-01 1 212218054 212218054 A C DTL Silent p.R77R 0.11 TCGA-GS-A9TZ-01 1 22183832 22183832 G A HSPG2 Silent p.S1780S 0.26 TCGA-GS-A9TZ-01 1 222721252 222721252 G A HHIPL2 Silent p.C45C 0.30 TCGA-GS-A9TZ-01 1 223568783 223568783 A T C1orf65 3'UTR 0.29 TCGA-GS-A9TZ-01 1 226924300 226924300 C T ITPKB Missense_Mutation p.S287N 0.24 tolerated_low_confidence(0.09) benign(0.008) TCGA-GS-A9TZ-01 1 234743399 234743399 T C IRF2BP2 Silent p.E416E 0.24 TCGA-GS-A9TZ-01 1 235505867 235505867 C G GGPS1 Missense_Mutation p.T228S 0.32 tolerated(0.85) benign(0.025) TCGA-GS-A9TZ-01 1 235966354 235966354 G C LYST Missense_Mutation p.S1189C 0.37 tolerated(0.1) benign(0.003) TCGA-GS-A9TZ-01 1 240071401 240071401 C A CHRM3 Missense_Mutation p.P217H 0.14 deleterious(0.01) possibly_damaging(0.813) TCGA-GS-A9TZ-01 1 248129487 248129487 G A OR2AK2 Missense_Mutation p.R285Q 0.15 tolerated(1) benign(0.002) TCGA-GS-A9TZ-01 1 248343746 248343746 T C OR2M2 Silent p.S153S 0.27 TCGA-GS-A9TZ-01 1 2488064 2488064 T A TNFRSF14 5'UTR 0.61 TCGA-GS-A9TZ-01 1 33116071 33116071 G A ZBTB8OS Silent p.I32I 0.38 TCGA-GS-A9TZ-01 1 3321441 3321441 C G PRDM16 Missense_Mutation p.N341K 0.26 deleterious(0.01) possibly_damaging(0.847) TCGA-GS-A9TZ-01 1 40697260 40697262 GTC - RLF In_Frame_Del p.R341del 0.27 TCGA-GS-A9TZ-01 1 43637173 43637173 G A EBNA1BP2 Silent p.D155D 0.29 TCGA-GS-A9TZ-01 1 44087647 44087647 C T PTPRF Silent p.L1899L 0.33 TCGA-GS-A9TZ-01 1 46806403 46806403 C T NSUN4 5'UTR 0.22 TCGA-GS-A9TZ-01 1 47110904 47110904 C T ATPAF1 Missense_Mutation p.E228K 0.32 deleterious(0.01) benign(0.186) TCGA-GS-A9TZ-01 1 60325900 60325900 C T HOOK1 Missense_Mutation p.R478C 0.25 tolerated(0.2) possibly_damaging(0.79) TCGA-GS-A9TZ-01 1 67133214 67133214 G C SGIP1 Missense_Mutation p.R158T 0.22 deleterious(0.02) probably_damaging(0.916) TCGA-GS-A9TZ-01 1 85113028 85113028 G C SSX2IP 3'UTR 0.35 TCGA-GS-A9TZ-01 1 92161330 92161330 A T TGFBR3 Missense_Mutation p.F779Y 0.25 tolerated(0.08) benign(0.218) TCGA-GS-A9TZ-01 1 92495589 92495589 G A EPHX4 5'UTR 0.32 TCGA-GS-A9TZ-01 1 99762423 99762423 G T LPPR4 Missense_Mutation p.G180C 0.23 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 20 18131484 18131484 A T CSRP2BP Missense_Mutation p.Y133F 0.28 deleterious(0.01) possibly_damaging(0.825) TCGA-GS-A9TZ-01 20 18131517 18131517 G C CSRP2BP Missense_Mutation p.G144A 0.28 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TZ-01 20 18492908 18492908 C T SEC23B Silent p.F87F 0.12 TCGA-GS-A9TZ-01 20 19977369 19977369 G T RIN2 Missense_Mutation p.K798N 0.28 deleterious(0) probably_damaging(0.996) TCGA-GS-A9TZ-01 20 2816203 2816204 - C PCED1A Frame_Shift_Ins p.P424Afs*57 0.30 TCGA-GS-A9TZ-01 20 31671452 31671452 G A BPIFB4 Missense_Mutation p.R150Q 0.26 tolerated_low_confidence(0.13) benign(0.007) TCGA-GS-A9TZ-01 20 35219312 35219312 G T TGIF2 Splice_Site p.X65_splice 0.22 TCGA-GS-A9TZ-01 20 35234333 35234333 G A C20orf24 5'UTR 0.30 TCGA-GS-A9TZ-01 20 45237546 45237546 C T SLC13A3 Intron 0.32 TCGA-GS-A9TZ-01 20 472918 472918 C T CSNK2A1 Missense_Mutation p.E201K 0.22 deleterious(0) probably_damaging(0.91) TCGA-GS-A9TZ-01 20 47324856 47324856 C T PREX1 Missense_Mutation p.R242Q 0.08 deleterious(0) possibly_damaging(0.887) TCGA-GS-A9TZ-01 20 485848 485848 G A CSNK2A1 Nonsense_Mutation p.R43* 0.25 TCGA-GS-A9TZ-01 20 50048903 50048903 G A NFATC2 Missense_Mutation p.S808L 0.33 deleterious(0.04) possibly_damaging(0.449) TCGA-GS-A9TZ-01 20 55748291 55748291 T C BMP7 Missense_Mutation p.M371V 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-GS-A9TZ-01 20 56929269 56929269 A G RAB22A Silent p.V145V 0.19 TCGA-GS-A9TZ-01 20 57227077 57227077 T C STX16 Silent p.R5R 0.24 TCGA-GS-A9TZ-01 20 60962392 60962392 G A RPS21 5'UTR 0.26 TCGA-GS-A9TZ-01 20 61443664 61443664 G A OGFR Missense_Mutation p.V233I 0.30 tolerated(0.06) benign(0.338) TCGA-GS-A9TZ-01 20 62597525 62597525 G A ZNF512B Missense_Mutation p.R335C 0.19 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TZ-01 20 7920952 7920952 T G HAO1 Missense_Mutation p.N40H 0.16 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 21 22710786 22710786 G A NCAM2 Missense_Mutation p.G326R 0.25 deleterious(0) probably_damaging(0.983) TCGA-GS-A9TZ-01 21 34924682 34924682 A C SON Missense_Mutation p.M1049L 0.36 benign(0.008) TCGA-GS-A9TZ-01 22 23230415 23230416 - CAG IGLL5 In_Frame_Ins p.S62dup 0.32 TCGA-GS-A9TZ-01 22 23235972 23235972 G C IGLL5 Missense_Mutation p.G100A 0.14 tolerated_low_confidence(0.1) probably_damaging(0.978) TCGA-GS-A9TZ-01 22 23243349 23243349 G A IGLC2 Silent p.K65K 0.32 TCGA-GS-A9TZ-01 22 23243406 23243406 C T IGLC2 Silent p.S84S 0.38 TCGA-GS-A9TZ-01 22 23243447 23243447 A G IGLC2 Missense_Mutation p.K98R 0.32 benign(0.286) TCGA-GS-A9TZ-01 22 23243523 23243523 C A IGLC2 3'UTR 0.30 TCGA-GS-A9TZ-01 22 23247175 23247175 T A IGLJ3 Missense_Mutation p.F41I 0.22 deleterious_low_confidence(0) possibly_damaging(0.514) TCGA-GS-A9TZ-01 22 23248637 23248637 A G IGLC3 Missense_Mutation p.K43E 0.16 benign(0.098) TCGA-GS-A9TZ-01 22 29195994 29195994 G C XBP1 Intron 0.28 TCGA-GS-A9TZ-01 22 29196021 29196021 G T XBP1 Intron 0.26 TCGA-GS-A9TZ-01 22 29660104 29660104 C T RHBDD3 Silent p.L84L 0.38 TCGA-GS-A9TZ-01 22 29938874 29938876 CTT - THOC5 In_Frame_Del p.K142del 0.19 TCGA-GS-A9TZ-01 22 31795659 31795659 T G DRG1 5'UTR 0.38 TCGA-GS-A9TZ-01 22 38995862 38995862 G A FAM227A Missense_Mutation p.P424L 0.15 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 22 44287689 44287689 G A PNPLA5 Silent p.H24H 0.26 TCGA-GS-A9TZ-01 22 45789587 45789587 G A SMC1B Missense_Mutation p.T491I 0.28 tolerated(0.27) benign(0.023) TCGA-GS-A9TZ-01 22 45958992 45958992 G A FBLN1 Intron 0.33 TCGA-GS-A9TZ-01 2 107460134 107460134 G T ST6GAL2 Silent p.A100A 0.37 TCGA-GS-A9TZ-01 2 114514142 114514142 A C SLC35F5 5'UTR 0.44 TCGA-GS-A9TZ-01 2 120124666 120124666 G T DBI 5'Flank 0.41 TCGA-GS-A9TZ-01 2 125530582 125530582 C A CNTNAP5 Missense_Mutation p.Q913K 0.21 deleterious(0) possibly_damaging(0.528) TCGA-GS-A9TZ-01 2 127957076 127957076 T A CYP27C1 Missense_Mutation p.Y143F 0.32 deleterious(0.03) benign(0.09) TCGA-GS-A9TZ-01 2 141660530 141660530 C A LRP1B Missense_Mutation p.G1242V 0.27 probably_damaging(0.953) TCGA-GS-A9TZ-01 2 1440080 1440080 T C TPO Missense_Mutation p.Y136H 0.32 tolerated(0.42) benign(0.008) TCGA-GS-A9TZ-01 2 162267973 162267973 C G PSMD14 3'UTR 0.45 TCGA-GS-A9TZ-01 2 1652954 1652954 G T PXDN Missense_Mutation p.D866E 0.37 deleterious(0.05) possibly_damaging(0.734) TCGA-GS-A9TZ-01 2 1653227 1653227 G A PXDN Silent p.F775F 0.26 TCGA-GS-A9TZ-01 2 166770146 166770146 C T TTC21B Missense_Mutation p.E717K 0.18 deleterious(0.04) possibly_damaging(0.451) TCGA-GS-A9TZ-01 2 167145040 167145040 T G SCN9A Missense_Mutation p.E407D 0.22 deleterious(0.05) probably_damaging(0.998) TCGA-GS-A9TZ-01 2 168101269 168101269 G T XIRP2 Missense_Mutation p.D1123Y 0.32 probably_damaging(1) TCGA-GS-A9TZ-01 2 168106466 168106466 A G XIRP2 Missense_Mutation p.Q2855R 0.32 possibly_damaging(0.853) TCGA-GS-A9TZ-01 2 170101220 170101220 G A LRP2 Missense_Mutation p.S1138F 0.33 probably_damaging(1) TCGA-GS-A9TZ-01 2 177053759 177053759 C T HOXD1 Missense_Mutation p.P77L 0.32 tolerated(0.05) benign(0.019) TCGA-GS-A9TZ-01 2 183066419 183066419 C T PDE1A Missense_Mutation p.E350K 0.11 deleterious(0.03) benign(0.127) TCGA-GS-A9TZ-01 2 183604640 183604640 C T DNAJC10 Intron 0.30 TCGA-GS-A9TZ-01 2 183822287 183822287 G A NCKAP1 Missense_Mutation p.A646V 0.08 tolerated(0.23) possibly_damaging(0.882) TCGA-GS-A9TZ-01 2 183866768 183866768 G A NCKAP1 Silent p.D178D 0.21 TCGA-GS-A9TZ-01 2 186670905 186670905 C T FSIP2 Silent p.D5713D 0.39 TCGA-GS-A9TZ-01 2 186671505 186671505 C G FSIP2 Silent p.L5913L 0.29 TCGA-GS-A9TZ-01 2 189916123 189916123 G A COL5A2 Missense_Mutation p.R952C 0.29 unknown(0) TCGA-GS-A9TZ-01 2 191873810 191873810 G A STAT1 Missense_Mutation p.S51L 0.18 deleterious(0) probably_damaging(0.966) TCGA-GS-A9TZ-01 2 198299745 198299745 A C SF3B1 5'UTR 0.17 TCGA-GS-A9TZ-01 2 198299766 198299766 A T SF3B1 5'UTR 0.30 TCGA-GS-A9TZ-01 2 198948613 198948613 C T PLCL1 Silent p.V124V 0.32 TCGA-GS-A9TZ-01 2 198950643 198950643 A T PLCL1 Missense_Mutation p.D801V 0.25 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 2 202899742 202899742 C T FZD7 Silent p.C124C 0.39 TCGA-GS-A9TZ-01 2 206041194 206041194 C T PARD3B Missense_Mutation p.S544F 0.20 tolerated(0.1) possibly_damaging(0.83) TCGA-GS-A9TZ-01 2 206921607 206921607 C A INO80D Missense_Mutation p.K93N 0.32 deleterious(0.01) probably_damaging(0.966) TCGA-GS-A9TZ-01 2 20840540 20840540 C T HS1BP3 Intron 0.08 TCGA-GS-A9TZ-01 2 209204167 209204167 C T PIKFYVE Silent p.S1566S 0.33 TCGA-GS-A9TZ-01 2 211421375 211421375 C T CPS1 Intron 0.25 TCGA-GS-A9TZ-01 2 213403208 213403208 G A ERBB4 Missense_Mutation p.A16V 0.47 tolerated(0.5) benign(0.001) TCGA-GS-A9TZ-01 2 220408842 220408842 G A TMEM198 Intron 0.45 TCGA-GS-A9TZ-01 2 222347138 222347138 C A EPHA4 Nonsense_Mutation p.G418* 0.33 TCGA-GS-A9TZ-01 2 225637895 225637895 C T DOCK10 Silent p.L2061L 0.10 TCGA-GS-A9TZ-01 2 228401667 228401667 T G AGFG1 Missense_Mutation p.S470A 0.23 tolerated(1) benign(0.001) TCGA-GS-A9TZ-01 2 228401669 228401669 T C AGFG1 Silent p.S470S 0.24 TCGA-GS-A9TZ-01 2 233272600 233272600 C T ALPPL2 Missense_Mutation p.S174L 0.28 deleterious(0) probably_damaging(0.989) TCGA-GS-A9TZ-01 2 233413881 233413881 T A TIGD1 Missense_Mutation p.I238F 0.21 deleterious(0) possibly_damaging(0.803) TCGA-GS-A9TZ-01 2 240984801 240984801 G A OR6B3 Missense_Mutation p.S230L 0.29 deleterious(0.01) benign(0.262) TCGA-GS-A9TZ-01 2 27876339 27876339 C T SUPT7L 3'UTR 0.20 TCGA-GS-A9TZ-01 2 44457333 44457333 T A PPM1B Intron 0.40 TCGA-GS-A9TZ-01 2 50148818 50148818 C G NRXN1 3'UTR 0.36 TCGA-GS-A9TZ-01 2 5839817 5839817 C T SOX11 3'UTR 0.06 TCGA-GS-A9TZ-01 2 63280071 63280071 G A OTX1 5'UTR 0.40 TCGA-GS-A9TZ-01 2 68521067 68521067 G A CNRIP1 Missense_Mutation p.S141F 0.24 tolerated(0.05) benign(0.24) TCGA-GS-A9TZ-01 2 70520561 70520561 A T SNRPG Intron 0.14 TCGA-GS-A9TZ-01 2 74405831 74405831 C T MOB1A 5'UTR 0.41 TCGA-GS-A9TZ-01 2 80529909 80529909 C A LRRTM1 Nonsense_Mutation p.E346* 0.33 TCGA-GS-A9TZ-01 2 80529910 80529910 C A LRRTM1 Silent p.P345P 0.34 TCGA-GS-A9TZ-01 2 89544305 89544305 C T IGKV2-30 Missense_Mutation p.D107N 0.17 deleterious(0.02) probably_damaging(0.951) TCGA-GS-A9TZ-01 2 89544344 89544344 T C IGKV2-30 Missense_Mutation p.T94A 0.21 deleterious(0) benign(0.43) TCGA-GS-A9TZ-01 2 99439757 99439757 C T KIAA1211L Missense_Mutation p.V327I 0.25 tolerated(0.61) benign(0) TCGA-GS-A9TZ-01 3 111313194 111313194 G A ZBED2 5'UTR 0.34 TCGA-GS-A9TZ-01 3 113724355 113724355 T C KIAA1407 Missense_Mutation p.N623S 0.29 tolerated(0.53) benign(0.009) TCGA-GS-A9TZ-01 3 122134449 122134449 C T WDR5B 5'UTR 0.17 TCGA-GS-A9TZ-01 3 122288257 122288257 T A DTX3L Missense_Mutation p.F441I 0.29 deleterious(0.04) benign(0.103) TCGA-GS-A9TZ-01 3 126194205 126194205 G A ZXDC Silent p.S168S 0.19 TCGA-GS-A9TZ-01 3 138724565 138724565 G A PRR23A Silent p.S182S 0.12 TCGA-GS-A9TZ-01 3 142286938 142286938 A T ATR Missense_Mutation p.F40I 0.12 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-GS-A9TZ-01 3 142286975 142286975 A T ATR Missense_Mutation p.N27K 0.11 deleterious_low_confidence(0.03) benign(0.256) TCGA-GS-A9TZ-01 3 150128494 150128494 C T TSC22D2 Nonsense_Mutation p.Q453* 0.09 TCGA-GS-A9TZ-01 3 150480589 150480589 G A SIAH2 Silent p.S16S 0.34 TCGA-GS-A9TZ-01 3 154860063 154860063 G A MME Missense_Mutation p.D378N 0.30 tolerated(0.17) benign(0.02) TCGA-GS-A9TZ-01 3 156742690 156742690 G A LEKR1 Missense_Mutation p.E449K 0.14 deleterious(0) possibly_damaging(0.486) TCGA-GS-A9TZ-01 3 164733862 164733862 G T SI Missense_Mutation p.Q1256K 0.27 deleterious(0) probably_damaging(0.988) TCGA-GS-A9TZ-01 3 171177894 171177896 AGC - TNIK 5'UTR 0.15 TCGA-GS-A9TZ-01 3 180334082 180334082 A G CCDC39 Missense_Mutation p.S886P 0.26 tolerated(0.22) possibly_damaging(0.571) TCGA-GS-A9TZ-01 3 193071932 193071932 T A ATP13A5 Missense_Mutation p.K197M 0.21 deleterious(0) probably_damaging(0.976) TCGA-GS-A9TZ-01 3 193071966 193071966 T G ATP13A5 Missense_Mutation p.N186H 0.14 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 3 30903088 30903088 C T GADL1 Silent p.E69E 0.18 TCGA-GS-A9TZ-01 3 33260327 33260327 G C SUSD5 5'UTR 0.45 TCGA-GS-A9TZ-01 3 36896835 36896835 T A TRANK1 Missense_Mutation p.M1416L 0.38 tolerated(0.09) possibly_damaging(0.863) TCGA-GS-A9TZ-01 3 44612048 44612048 C G ZKSCAN7 Silent p.L482L 0.26 TCGA-GS-A9TZ-01 3 48501189 48501189 C T ATRIP Missense_Mutation p.S310F 0.36 deleterious(0) probably_damaging(0.931) TCGA-GS-A9TZ-01 3 50645816 50645816 G T CISH Missense_Mutation p.L94I 0.33 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 3 64606792 64606792 C T ADAMTS9 Silent p.L937L 0.14 TCGA-GS-A9TZ-01 3 69915452 69915452 T C MITF Intron 0.10 TCGA-GS-A9TZ-01 3 81539442 81539442 G C GBE1 3'UTR 0.12 TCGA-GS-A9TZ-01 3 9695364 9695364 G C MTMR14 Silent p.V73V 0.17 TCGA-GS-A9TZ-01 3 9885228 9885228 G T RPUSD3 Silent p.P61P 0.24 TCGA-GS-A9TZ-01 4 113108366 113108366 C T C4orf32 3'UTR 0.50 TCGA-GS-A9TZ-01 4 118005429 118005429 G A TRAM1L1 3'UTR 0.12 TCGA-GS-A9TZ-01 4 119978995 119978995 C T SYNPO2 Missense_Mutation p.A1231V 0.12 deleterious(0.02) benign(0.004) TCGA-GS-A9TZ-01 4 120549906 120549906 C G PDE5A 5'UTR 0.33 TCGA-GS-A9TZ-01 4 126240717 126240717 C T FAT4 Nonsense_Mutation p.Q1051* 0.14 TCGA-GS-A9TZ-01 4 141560570 141560570 T G TBC1D9 Missense_Mutation p.I784L 0.41 tolerated(1) probably_damaging(0.946) TCGA-GS-A9TZ-01 4 159092202 159092202 A G FAM198B Missense_Mutation p.I109T 0.38 deleterious(0) benign(0.291) TCGA-GS-A9TZ-01 4 159636555 159636555 C T PPID Missense_Mutation p.V216I 0.38 tolerated(0.38) benign(0.001) TCGA-GS-A9TZ-01 4 16168278 16168278 C T TAPT1 Silent p.Q484Q 0.43 TCGA-GS-A9TZ-01 4 176923581 176923581 G A GPM6A 5'Flank 0.15 TCGA-GS-A9TZ-01 4 17843962 17843962 A C NCAPG Missense_Mutation p.T962P 0.40 tolerated(0.24) benign(0.078) TCGA-GS-A9TZ-01 4 185678125 185678125 C G ACSL1 3'UTR 0.30 TCGA-GS-A9TZ-01 4 187524408 187524408 C T FAT1 Missense_Mutation p.V3758M 0.43 benign(0.238) TCGA-GS-A9TZ-01 4 187542336 187542336 C G FAT1 Missense_Mutation p.D1802H 0.16 benign(0.031) TCGA-GS-A9TZ-01 4 40045185 40045185 C A RP11-333E13.4 RNA 0.37 TCGA-GS-A9TZ-01 4 41747879 41747879 G A PHOX2B Missense_Mutation p.S297L 0.44 deleterious_low_confidence(0) unknown(0) TCGA-GS-A9TZ-01 4 420130 420130 G A ABCA11P RNA 0.06 TCGA-GS-A9TZ-01 4 57333850 57333850 G A SRP72 Missense_Mutation p.E17K 0.46 deleterious(0.01) possibly_damaging(0.881) TCGA-GS-A9TZ-01 4 57871515 57871515 G T POLR2B Missense_Mutation p.R335I 0.47 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 4 667755 667755 G A ATP5I Missense_Mutation p.L13F 0.18 tolerated(0.82) benign(0.036) TCGA-GS-A9TZ-01 4 81123614 81123614 G A PRDM8 Missense_Mutation p.R333Q 0.58 tolerated_low_confidence(0.06) possibly_damaging(0.456) TCGA-GS-A9TZ-01 4 89618637 89618637 C T NAP1L5 Missense_Mutation p.R90Q 0.52 tolerated(0.33) possibly_damaging(0.606) TCGA-GS-A9TZ-01 4 90874226 90874226 G T MMRN1 Missense_Mutation p.G1115V 0.18 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 4 96222814 96222814 C T UNC5C Missense_Mutation p.V145M 0.40 deleterious(0) probably_damaging(0.982) TCGA-GS-A9TZ-01 5 10973391 10973391 C T CTNND2 3'UTR 0.47 TCGA-GS-A9TZ-01 5 11364898 11364898 C T CTNND2 Missense_Mutation p.V428I 0.33 deleterious(0.01) benign(0.156) TCGA-GS-A9TZ-01 5 121412595 121412595 G C LOX Missense_Mutation p.L245V 0.12 deleterious(0.02) possibly_damaging(0.874) TCGA-GS-A9TZ-01 5 122881389 122881389 C G CSNK1G3 Nonsense_Mutation p.S11* 0.16 TCGA-GS-A9TZ-01 5 133541408 133541408 C T PPP2CA Intron 0.50 TCGA-GS-A9TZ-01 5 134296332 134296332 G A PCBD2 Silent p.K118K 0.04 TCGA-GS-A9TZ-01 5 138842249 138842249 T G ECSCR Missense_Mutation p.T3P 0.29 deleterious(0) possibly_damaging(0.702) TCGA-GS-A9TZ-01 5 140186916 140186916 C T PCDHA4 Silent p.I48I 0.32 TCGA-GS-A9TZ-01 5 140201800 140201800 C T PCDHA5 Missense_Mutation p.P147L 0.25 tolerated_low_confidence(0.47) benign(0.027) TCGA-GS-A9TZ-01 5 140890844 140890844 A T PCDHGB6 3'UTR 0.34 TCGA-GS-A9TZ-01 5 14397228 14397228 G A TRIO Missense_Mutation p.R1463Q 0.08 probably_damaging(0.931) TCGA-GS-A9TZ-01 5 145428733 145428733 G C SH3RF2 Missense_Mutation p.G416A 0.21 deleterious(0.05) possibly_damaging(0.856) TCGA-GS-A9TZ-01 5 159776073 159776073 C T C1QTNF2 3'UTR 0.55 TCGA-GS-A9TZ-01 5 160042971 160042971 C T ATP10B Missense_Mutation p.V843I 0.10 deleterious(0.05) benign(0.232) TCGA-GS-A9TZ-01 5 160071166 160071166 C T ATP10B Missense_Mutation p.V283I 0.43 tolerated(0.19) benign(0.052) TCGA-GS-A9TZ-01 5 172113904 172113904 C T NEURL1B Silent p.D548D 0.37 TCGA-GS-A9TZ-01 5 172659554 172659554 G A NKX2-5 3'UTR 0.37 TCGA-GS-A9TZ-01 5 173317237 173317237 T C CPEB4 Silent p.G167G 0.23 TCGA-GS-A9TZ-01 5 173317293 173317293 A C CPEB4 Missense_Mutation p.D186A 0.21 deleterious_low_confidence(0) benign(0.206) TCGA-GS-A9TZ-01 5 174870316 174870316 C A DRD1 5'UTR 0.18 TCGA-GS-A9TZ-01 5 175395224 175395224 A C THOC3 5'UTR 0.23 TCGA-GS-A9TZ-01 5 176516652 176516652 C T FGFR4 Missense_Mutation p.P17S 0.47 tolerated_low_confidence(0.32) unknown(0) TCGA-GS-A9TZ-01 5 176778602 176778602 C T LMAN2 Missense_Mutation p.C16Y 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-GS-A9TZ-01 5 177695744 177695744 G A COL23A1 Missense_Mutation p.P161L 0.14 deleterious(0.01) unknown(0) TCGA-GS-A9TZ-01 5 178373943 178373943 G A ZNF454 Missense_Mutation p.R69K 0.42 tolerated(1) benign(0.004) TCGA-GS-A9TZ-01 5 180622137 180622137 C T TRIM7 3'UTR 0.43 TCGA-GS-A9TZ-01 5 22078909 22078909 G A CDH12 5'UTR 0.29 TCGA-GS-A9TZ-01 5 41870421 41870421 A G OXCT1 Missense_Mutation p.C14R 0.24 tolerated(0.75) benign(0) TCGA-GS-A9TZ-01 5 45262330 45262330 G C HCN1 Missense_Mutation p.S789W 0.30 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-GS-A9TZ-01 5 52347391 52347391 T A ITGA2 Splice_Site p.X260_splice 0.12 TCGA-GS-A9TZ-01 5 61659147 61659147 G C KIF2A Missense_Mutation p.R421T 0.10 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TZ-01 5 65374285 65374285 G A ERBB2IP Missense_Mutation p.G1396E 0.43 tolerated(0.63) probably_damaging(0.97) TCGA-GS-A9TZ-01 5 66462503 66462503 A T MAST4 Missense_Mutation p.N2499I 0.24 benign(0.005) TCGA-GS-A9TZ-01 5 70671769 70671769 C T RP11-136K7.2 Intron 0.38 TCGA-GS-A9TZ-01 5 72744248 72744248 C A FOXD1 5'UTR 0.22 TCGA-GS-A9TZ-01 5 78915498 78915498 C A PAPD4 Silent p.R9R 0.41 TCGA-GS-A9TZ-01 5 79028813 79028813 G T CMYA5 Nonsense_Mutation p.E1409* 0.12 TCGA-GS-A9TZ-01 5 82937277 82937277 C T HAPLN1 3'UTR 0.41 TCGA-GS-A9TZ-01 5 86708576 86708576 G A CCNH Silent p.T12T 0.38 TCGA-GS-A9TZ-01 5 98215314 98215314 C T CHD1 Missense_Mutation p.R1060K 0.12 tolerated(0.43) benign(0.023) TCGA-GS-A9TZ-01 6 101037846 101037846 G A ASCC3 Missense_Mutation p.S1798F 0.17 deleterious(0) probably_damaging(0.933) TCGA-GS-A9TZ-01 6 105607586 105607586 C T POPDC3 Silent p.Q198Q 0.26 TCGA-GS-A9TZ-01 6 106968516 106968516 G A AIM1 Missense_Mutation p.E737K 0.21 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TZ-01 6 108370472 108370472 G A OSTM1 Missense_Mutation p.R312C 0.16 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 6 111656671 111656671 C T REV3L Splice_Site p.X2560_splice 0.23 TCGA-GS-A9TZ-01 6 114378666 114378666 G T HS3ST5 Missense_Mutation p.L266I 0.29 tolerated(0.39) possibly_damaging(0.783) TCGA-GS-A9TZ-01 6 117894665 117894665 C A GOPC Missense_Mutation p.D261Y 0.30 deleterious(0) possibly_damaging(0.661) TCGA-GS-A9TZ-01 6 129573246 129573246 C T LAMA2 Silent p.I634I 0.11 TCGA-GS-A9TZ-01 6 138200319 138200319 C A TNFAIP3 Nonsense_Mutation p.C579* 0.28 TCGA-GS-A9TZ-01 6 138202395 138202395 G A TNFAIP3 Missense_Mutation p.G771D 0.32 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TZ-01 6 14118179 14118179 A C CD83 Splice_Site p.X13_splice 0.16 TCGA-GS-A9TZ-01 6 14118187 14118187 G C CD83 Missense_Mutation p.S15T 0.17 tolerated(0.21) possibly_damaging(0.842) TCGA-GS-A9TZ-01 6 14118269 14118269 G C CD83 Missense_Mutation p.Q42H 0.26 tolerated(0.14) benign(0.038) TCGA-GS-A9TZ-01 6 147123911 147123911 T C ADGB Intron 0.26 TCGA-GS-A9TZ-01 6 149795679 149795679 T C ZC3H12D Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-GS-A9TZ-01 6 149795746 149795746 T C ZC3H12D 5'UTR 0.24 TCGA-GS-A9TZ-01 6 150123525 150123525 C A PCMT1 Intron 0.26 TCGA-GS-A9TZ-01 6 150123633 150123633 C T PCMT1 Intron 0.24 TCGA-GS-A9TZ-01 6 24718818 24718818 C T C6orf62 Missense_Mutation p.A27T 0.11 deleterious(0) probably_damaging(0.998) TCGA-GS-A9TZ-01 6 26027153 26027153 A G HIST1H4B 3'UTR 0.11 TCGA-GS-A9TZ-01 6 26156900 26156900 G A HIST1H1E Silent p.V94V 0.25 TCGA-GS-A9TZ-01 6 26199193 26199193 C T HIST1H2AD Silent p.E93E 0.27 TCGA-GS-A9TZ-01 6 27100437 27100437 C T HIST1H2BJ Silent p.K31K 0.10 TCGA-GS-A9TZ-01 6 27805994 27805994 C A HIST1H2AK Nonsense_Mutation p.E42* 0.32 TCGA-GS-A9TZ-01 6 29911109 29911115 GTACCGG ATAC HLA-A In_Frame_Del p.R138del 0.46 TCGA-GS-A9TZ-01 6 31602134 31602134 T G PRRC2A Nonsense_Mutation p.L1614* 0.40 TCGA-GS-A9TZ-01 6 32908586 32908586 C T XXbac-BPG181M17.5 Missense_Mutation p.S32N 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.494) TCGA-GS-A9TZ-01 6 32948431 32948431 C G BRD2 Nonsense_Mutation p.S816* 0.30 TCGA-GS-A9TZ-01 6 41908755 41908755 C T CCND3 Intron 0.20 TCGA-GS-A9TZ-01 6 42713452 42713452 C T TBCC Silent p.L120L 0.32 TCGA-GS-A9TZ-01 6 44232717 44232717 A G NFKBIE Splice_Site p.X261_splice 0.39 TCGA-GS-A9TZ-01 6 44232739 44232742 GTAA - NFKBIE Frame_Shift_Del p.Y254Sfs*13 0.36 TCGA-GS-A9TZ-01 6 44232750 44232750 C T NFKBIE Missense_Mutation p.A251T 0.31 tolerated(0.21) benign(0.093) TCGA-GS-A9TZ-01 6 46836655 46836655 A G GPR116 Missense_Mutation p.V529A 0.06 deleterious(0) possibly_damaging(0.861) TCGA-GS-A9TZ-01 6 49754100 49754100 T G PGK2 Missense_Mutation p.K267N 0.30 tolerated(0.23) benign(0.003) TCGA-GS-A9TZ-01 6 56707985 56707985 C T RP11-472M19.2 5'Flank 0.29 TCGA-GS-A9TZ-01 6 70070955 70070955 G A BAI3 Missense_Mutation p.E1264K 0.27 deleterious(0.02) benign(0.036) TCGA-GS-A9TZ-01 6 75969173 75969173 G C TMEM30A Missense_Mutation p.S192C 0.22 deleterious(0.01) probably_damaging(0.928) TCGA-GS-A9TZ-01 6 82881017 82881017 G A IBTK 3'UTR 0.34 TCGA-GS-A9TZ-01 6 90062277 90062277 G A UBE2J1 Silent p.R4R 0.31 TCGA-GS-A9TZ-01 6 90660815 90660815 G A BACH2 Missense_Mutation p.S337L 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-GS-A9TZ-01 6 90718537 90718537 G A BACH2 Silent p.S9S 0.23 TCGA-GS-A9TZ-01 7 100028402 100028402 C T MEPCE Missense_Mutation p.S254L 0.24 deleterious(0.04) possibly_damaging(0.88) TCGA-GS-A9TZ-01 7 101952144 101952144 G A SH2B2 Silent p.Q336Q 0.19 TCGA-GS-A9TZ-01 7 102113388 102113388 C A LRWD1 Silent p.G612G 0.30 TCGA-GS-A9TZ-01 7 102875094 102875094 A G DPY19L2P2 Splice_Site 0.26 TCGA-GS-A9TZ-01 7 106301370 106301370 C T CCDC71L 5'UTR 0.29 TCGA-GS-A9TZ-01 7 107330631 107330631 C A SLC26A4 Silent p.T404T 0.09 TCGA-GS-A9TZ-01 7 110763595 110763595 T C LRRN3 Missense_Mutation p.L256P 0.25 deleterious(0) probably_damaging(1) TCGA-GS-A9TZ-01 7 110764124 110764124 A G LRRN3 Silent p.L432L 0.23 TCGA-GS-A9TZ-01 7 117832025 117832025 G A NAA38 Missense_Mutation p.R87Q 0.26 deleterious(0.01) benign(0.037) TCGA-GS-A9TZ-01 7 128414637 128414637 G A OPN1SW Missense_Mutation p.T201M 0.15 tolerated(0.06) probably_damaging(0.971) TCGA-GS-A9TZ-01 7 129104487 129104487 G A STRIP2 Missense_Mutation p.D562N 0.28 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TZ-01 7 138444524 138444524 C T ATP6V0A4 Missense_Mutation p.M204I 0.18 tolerated(1) benign(0.006) TCGA-GS-A9TZ-01 7 138793954 138793954 G A ZC3HAV1 Nonsense_Mutation p.Q42* 0.13 TCGA-GS-A9TZ-01 7 140045717 140045717 G A SLC37A3 Missense_Mutation p.L360F 0.27 deleterious(0.01) possibly_damaging(0.853) TCGA-GS-A9TZ-01 7 144077257 144077257 C T ARHGEF5 3'UTR 0.24 TCGA-GS-A9TZ-01 7 148801312 148801312 C T ZNF425 Missense_Mutation p.E551K 0.32 deleterious(0.03) probably_damaging(0.981) TCGA-GS-A9TZ-01 7 149474843 149474843 G A ZNF467 5'Flank 0.16 TCGA-GS-A9TZ-01 7 151818708 151818708 C T GALNT11 Silent p.V591V 0.29 TCGA-GS-A9TZ-01 7 152345654 152345654 G A XRCC2 3'UTR 0.36 TCGA-GS-A9TZ-01 7 18674253 18674253 C T HDAC9 Missense_Mutation p.S267F 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-GS-A9TZ-01 7 20199461 20199461 G A MACC1 Missense_Mutation p.R175W 0.09 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TZ-01 7 21788212 21788212 G A DNAH11 Missense_Mutation p.R2849Q 0.34 probably_damaging(0.997) TCGA-GS-A9TZ-01 7 31614238 31614238 C T CCDC129 Silent p.I186I 0.32 TCGA-GS-A9TZ-01 7 33044805 33044805 G A FKBP9 Missense_Mutation p.A519T 0.25 tolerated(0.64) benign(0.004) TCGA-GS-A9TZ-01 7 45791204 45791204 T G SEPT7P2 RNA 0.34 TCGA-GS-A9TZ-01 7 48312478 48312478 A T ABCA13 Missense_Mutation p.D1072V 0.29 probably_damaging(0.973) TCGA-GS-A9TZ-01 7 5568300 5568300 A T ACTB Silent p.A138A 0.27 TCGA-GS-A9TZ-01 7 5568897 5568897 C G ACTB Missense_Mutation p.W86C 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GS-A9TZ-01 7 5569251 5569251 C G ACTB Missense_Mutation p.G13A 0.12 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-GS-A9TZ-01 7 5569295 5569295 C T ACTB Splice_Site 0.20 TCGA-GS-A9TZ-01 7 6210890 6210890 T G CYTH3 Missense_Mutation p.M169L 0.30 deleterious(0.04) possibly_damaging(0.791) TCGA-GS-A9TZ-01 7 62752715 62752715 A G ZNF733P RNA 0.06 TCGA-GS-A9TZ-01 7 72267526 72267526 G A TYW1B Silent p.P245P 0.13 TCGA-GS-A9TZ-01 7 77885423 77885423 C T MAGI2 Silent p.V628V 0.26 TCGA-GS-A9TZ-01 7 94173774 94173774 C T CASD1 Nonsense_Mutation p.Q470* 0.26 TCGA-GS-A9TZ-01 7 94298580 94298580 G A PEG10 3'UTR 0.29 TCGA-GS-A9TZ-01 7 95864216 95864216 G A SLC25A13 Nonsense_Mutation p.Q76* 0.28 TCGA-GS-A9TZ-01 8 107695483 107695483 C T OXR1 Silent p.N121N 0.22 TCGA-GS-A9TZ-01 8 110535472 110535472 T C PKHD1L1 Missense_Mutation p.V4114A 0.19 tolerated(0.07) possibly_damaging(0.907) TCGA-GS-A9TZ-01 8 125989683 125989683 G A ZNF572 Silent p.K391K 0.48 TCGA-GS-A9TZ-01 8 144942991 144942991 G A EPPK1 Silent p.Y1477Y 0.53 TCGA-GS-A9TZ-01 8 17883168 17883168 G A PCM1 Splice_Site p.X2017_splice 0.34 TCGA-GS-A9TZ-01 8 21856273 21856273 C T XPO7 Nonsense_Mutation p.R785* 0.31 TCGA-GS-A9TZ-01 8 2966134 2966134 T C CSMD1 Missense_Mutation p.N2249D 0.43 possibly_damaging(0.862) TCGA-GS-A9TZ-01 8 37963905 37963905 C G ASH2L Missense_Mutation p.N66K 0.12 deleterious_low_confidence(0.05) benign(0.018) TCGA-GS-A9TZ-01 8 54147398 54147398 G A OPRK1 Silent p.I177I 0.24 TCGA-GS-A9TZ-01 8 59058743 59058743 C T FAM110B 5'UTR 0.40 TCGA-GS-A9TZ-01 8 65509170 65509170 T C CYP7B1 3'UTR 0.07 TCGA-GS-A9TZ-01 8 67479124 67479124 C T MYBL1 Missense_Mutation p.S611N 0.40 tolerated(0.28) benign(0.012) TCGA-GS-A9TZ-01 8 67577327 67577327 A T VCPIP1 Missense_Mutation p.Y623N 0.42 deleterious(0.01) probably_damaging(0.972) TCGA-GS-A9TZ-01 8 67577531 67577531 T C VCPIP1 Missense_Mutation p.I555V 0.47 tolerated(1) benign(0.001) TCGA-GS-A9TZ-01 8 77616687 77616687 A T ZFHX4 Missense_Mutation p.S122C 0.43 possibly_damaging(0.843) TCGA-GS-A9TZ-01 8 86352126 86352127 - A CA3 Nonsense_Mutation p.Y74* 0.30 TCGA-GS-A9TZ-01 8 87076614 87076614 C A PSKH2 Missense_Mutation p.E144D 0.43 deleterious(0.02) benign(0.277) TCGA-GS-A9TZ-01 9 104170419 104170419 G A ZNF189 Silent p.L123L 0.07 TCGA-GS-A9TZ-01 9 107380179 107380179 G A OR13C9 Missense_Mutation p.L103F 0.46 tolerated(0.24) benign(0.037) TCGA-GS-A9TZ-01 9 119097230 119097230 G A PAPPA Missense_Mutation p.R1163H 0.13 tolerated(0.06) benign(0) TCGA-GS-A9TZ-01 9 120476234 120476234 G T TLR4 Missense_Mutation p.A610S 0.23 tolerated(0.7) benign(0.111) TCGA-GS-A9TZ-01 9 123632173 123632173 G A PHF19 Silent p.L139L 0.15 TCGA-GS-A9TZ-01 9 12702305 12702305 T A TYRP1 Silent p.A316A 0.18 TCGA-GS-A9TZ-01 9 13165386 13165386 G A MPDZ Intron 0.38 TCGA-GS-A9TZ-01 9 13176313 13176313 G A MPDZ Missense_Mutation p.S918L 0.26 tolerated(0.39) benign(0.001) TCGA-GS-A9TZ-01 9 131768932 131768932 C T NUP188 Missense_Mutation p.A1742V 0.27 tolerated(0.25) probably_damaging(0.997) TCGA-GS-A9TZ-01 9 134319653 134319653 C T PRRC2B Missense_Mutation p.A184V 0.33 tolerated(0.3) benign(0.116) TCGA-GS-A9TZ-01 9 134612837 134612837 C T RAPGEF1 5'UTR 0.35 TCGA-GS-A9TZ-01 9 139568309 139568309 G A AGPAT2 Silent p.L244L 0.35 TCGA-GS-A9TZ-01 9 139909868 139909869 - G ABCA2 Frame_Shift_Ins p.Q1232Pfs*102 0.17 TCGA-GS-A9TZ-01 9 14750210 14750210 G T FREM1 Silent p.V1824V 0.06 TCGA-GS-A9TZ-01 9 17135148 17135148 G A CNTLN Missense_Mutation p.A29T 0.21 tolerated_low_confidence(0.27) benign(0.023) TCGA-GS-A9TZ-01 9 21216407 21216407 A G IFNA16 3'UTR 0.23 TCGA-GS-A9TZ-01 9 34379662 34379662 T A C9orf24 Silent p.L257L 0.23 TCGA-GS-A9TZ-01 9 35792654 35792654 C A NPR2 Missense_Mutation p.S83R 0.26 tolerated(0.61) benign(0.001) TCGA-GS-A9TZ-01 9 37745741 37745741 G C FRMPD1 Missense_Mutation p.D1238H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.717) TCGA-GS-A9TZ-01 9 43709680 43709680 T G CNTNAP3B Missense_Mutation p.L39W 0.19 deleterious(0) probably_damaging(0.995) TCGA-GS-A9TZ-01 9 74361164 74361164 C T TMEM2 Missense_Mutation p.R142H 0.08 tolerated(0.11) possibly_damaging(0.87) TCGA-GS-A9TZ-01 9 74489813 74489813 C G ABHD17B Missense_Mutation p.E62Q 0.20 tolerated(0.07) possibly_damaging(0.894) TCGA-GS-A9TZ-01 9 75785198 75785198 C A ANXA1 3'UTR 0.30 TCGA-GS-A9TZ-01 9 77632226 77632226 T C C9orf41 Silent p.L123L 0.29 TCGA-GS-A9TZ-01 9 84532113 84532113 C T SPATA31D5P RNA 0.07 TCGA-GS-A9TZ-01 9 8504278 8504278 G A PTPRD Missense_Mutation p.A602V 0.06 tolerated(1) probably_damaging(0.989) TCGA-GS-A9TZ-01 9 87285531 87285531 A G NTRK2 5'UTR 0.29 TCGA-GS-A9TZ-01 9 95527034 95527034 G A BICD2 5'UTR 0.20 TCGA-GS-A9TZ-01 9 98766918 98766918 G C ERCC6L2 Missense_Mutation p.K175N 0.15 tolerated(0.24) possibly_damaging(0.59) TCGA-GS-A9TZ-01 X 105199704 105199704 C A NRK 3'UTR 0.71 TCGA-GS-A9TZ-01 X 108867913 108867913 C T KCNE1L Missense_Mutation p.A113T 0.72 tolerated_low_confidence(0.12) benign(0.005) TCGA-GS-A9TZ-01 X 114426499 114426499 G T RBMXL3 Missense_Mutation p.G832V 0.68 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-GS-A9TZ-01 X 119211110 119211110 C T RHOXF2B Missense_Mutation p.G75R 0.64 deleterious(0.02) benign(0.041) TCGA-GS-A9TZ-01 X 12728588 12728588 T A FRMPD4 Missense_Mutation p.L514Q 0.70 deleterious(0) probably_damaging(0.999) TCGA-GS-A9TZ-01 X 147743486 147743486 G A AFF2 Missense_Mutation p.E80K 0.70 deleterious(0) probably_damaging(0.987) TCGA-GS-A9TZ-01 X 152034408 152034408 G A NSDHL Missense_Mutation p.A197T 0.62 deleterious(0) probably_damaging(0.997) TCGA-GS-A9TZ-01 X 153674051 153674051 A G FAM50A Missense_Mutation p.K61R 0.70 tolerated(0.05) benign(0.109) TCGA-GS-A9TZ-01 X 19369482 19369482 C T PDHA1 Silent p.F163F 0.67 TCGA-GS-A9TZ-01 X 20074801 20074801 C T MAP7D2 Missense_Mutation p.D161N 0.66 tolerated(0.25) probably_damaging(0.979) TCGA-GS-A9TZ-01 X 33146262 33146262 A G DMD Intron 0.59 TCGA-GS-A9TZ-01 X 33146303 33146303 G C DMD Intron 0.56 TCGA-GS-A9TZ-01 X 33146318 33146318 A G DMD Intron 0.52 TCGA-GS-A9TZ-01 X 41206603 41206603 G A DDX3X Missense_Mutation p.R603Q 0.65 deleterious(0) unknown(0) TCGA-GS-A9TZ-01 X 48775891 48775891 C G PIM2 Missense_Mutation p.E31D 0.78 tolerated(0.59) benign(0.001) TCGA-GS-A9TZ-01 X 66943810 66943810 A G AR 3'UTR 0.73 TCGA-GS-A9TZ-01 X 66943816 66943816 A C AR 3'UTR 0.79 TCGA-GS-A9TZ-01 X 76709750 76709750 C T FGF16 Missense_Mutation p.S35L 0.64 probably_damaging(0.942) TCGA-GS-A9U3-01 10 104679785 104679785 A G CNNM2 Silent p.K516K 0.05 TCGA-GS-A9U3-01 10 90773975 90773975 T C FAS Missense_Mutation p.I259T 0.23 deleterious(0) probably_damaging(1) TCGA-GS-A9U3-01 10 91195994 91195994 G A SLC16A12 Nonsense_Mutation p.Q371* 0.16 TCGA-GS-A9U3-01 10 98170201 98170201 C - TLL2 Frame_Shift_Del p.G360Efs*32 0.12 TCGA-GS-A9U3-01 11 104970112 104970112 G A CARD17 Missense_Mutation p.S104F 0.20 tolerated(0.16) benign(0.016) TCGA-GS-A9U3-01 11 105782841 105782841 G T GRIA4 Intron 0.19 TCGA-GS-A9U3-01 11 125708273 125708273 T C PATE4 Missense_Mutation p.L83P 0.17 tolerated(0.05) possibly_damaging(0.829) TCGA-GS-A9U3-01 11 209219 209219 G A RIC8A Intron 0.13 TCGA-GS-A9U3-01 11 55135959 55135959 T C OR4A15 Silent p.N200N 0.16 TCGA-GS-A9U3-01 11 55579056 55579056 G A OR5L1 Silent p.T38T 0.17 TCGA-GS-A9U3-01 11 6007398 6007398 C T OR52L1 Missense_Mutation p.A255T 0.16 tolerated(0.79) possibly_damaging(0.866) TCGA-GS-A9U3-01 11 61897893 61897893 G A INCENP Silent p.T298T 0.16 TCGA-GS-A9U3-01 11 65388334 65388334 C T PCNXL3 Missense_Mutation p.S711L 0.16 deleterious(0.04) benign(0.024) TCGA-GS-A9U3-01 11 66299440 66299440 G A BBS1 Missense_Mutation p.G572S 0.23 tolerated(0.14) benign(0.19) TCGA-GS-A9U3-01 11 7111164 7111164 G A RBMXL2 Silent p.G271G 0.20 TCGA-GS-A9U3-01 11 73997431 73997431 C T P4HA3 Missense_Mutation p.D259N 0.25 tolerated(0.47) benign(0.001) TCGA-GS-A9U3-01 11 83183793 83183793 T A DLG2 Missense_Mutation p.Y774F 0.09 deleterious(0) probably_damaging(0.995) TCGA-GS-A9U3-01 12 130649024 130649024 G C FZD10 Missense_Mutation p.V513L 0.18 tolerated(0.25) benign(0.157) TCGA-GS-A9U3-01 12 75816842 75816843 - T GLIPR1L2 Intron 0.11 TCGA-GS-A9U3-01 12 77158055 77158055 C T ZDHHC17 Silent p.D13D 0.17 TCGA-GS-A9U3-01 13 23908091 23908091 G A SACS Silent p.H3308H 0.18 TCGA-GS-A9U3-01 13 37679015 37679015 C T CSNK1A1L Missense_Mutation p.V127M 0.16 tolerated_low_confidence(0.18) probably_damaging(0.923) TCGA-GS-A9U3-01 14 105717125 105717125 T A BTBD6 3'UTR 0.23 TCGA-GS-A9U3-01 14 106829845 106829845 G A IGHV4-34 Missense_Mutation p.P40S 0.10 deleterious(0.01) possibly_damaging(0.551) TCGA-GS-A9U3-01 14 106829876 106829876 C T IGHV4-34 Silent p.Q29Q 0.12 TCGA-GS-A9U3-01 14 106830007 106830007 G C IGHV4-34 Missense_Mutation p.F13L 0.18 tolerated(0.88) benign(0.037) TCGA-GS-A9U3-01 15 27772692 27772692 G A GABRG3 Missense_Mutation p.V327I 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-GS-A9U3-01 15 41277549 41277549 T C INO80 Missense_Mutation p.K1303R 0.22 tolerated(0.15) probably_damaging(0.98) TCGA-GS-A9U3-01 15 41289768 41289768 G A INO80 Nonsense_Mutation p.R1177* 0.09 TCGA-GS-A9U3-01 15 96876487 96876487 G A NR2F2 Intron 0.21 TCGA-GS-A9U3-01 16 30093814 30093814 G A PPP4C Missense_Mutation p.D54N 0.15 deleterious(0.01) benign(0.346) TCGA-GS-A9U3-01 16 81145825 81145825 G A PKD1L2 RNA 0.09 TCGA-GS-A9U3-01 17 47799869 47799869 G A FAM117A Nonsense_Mutation p.R152* 0.14 TCGA-GS-A9U3-01 17 71166537 71166537 T C SSTR2 Missense_Mutation p.L360P 0.26 tolerated(0.29) possibly_damaging(0.61) TCGA-GS-A9U3-01 18 14542891 14542891 G A POTEC Silent p.D85D 0.11 TCGA-GS-A9U3-01 18 29039873 29039873 G T DSG3 Missense_Mutation p.A195S 0.13 deleterious(0) probably_damaging(1) TCGA-GS-A9U3-01 18 29246227 29246227 T C B4GALT6 Missense_Mutation p.N75S 0.03 tolerated(0.09) probably_damaging(0.936) TCGA-GS-A9U3-01 18 54346645 54346645 A G WDR7 Missense_Mutation p.Y81C 0.03 tolerated(0.06) possibly_damaging(0.882) TCGA-GS-A9U3-01 19 1275718 1275718 G A C19orf24 Missense_Mutation p.S57N 0.11 tolerated(0.25) benign(0.021) TCGA-GS-A9U3-01 19 13264975 13264975 C T IER2 3'UTR 0.23 TCGA-GS-A9U3-01 19 18084925 18084925 G T KCNN1 Missense_Mutation p.E76D 0.11 tolerated(0.24) benign(0.002) TCGA-GS-A9U3-01 19 51165532 51165532 G A SHANK1 Missense_Mutation p.P2059L 0.22 unknown(0) TCGA-GS-A9U3-01 1 11595630 11595630 G A PTCHD2 Missense_Mutation p.V1249M 0.09 deleterious(0) possibly_damaging(0.908) TCGA-GS-A9U3-01 1 151206713 151206713 A G PIP5K1A Missense_Mutation p.Y227C 0.31 deleterious(0) probably_damaging(0.988) TCGA-GS-A9U3-01 1 160794028 160794028 C T LY9 Missense_Mutation p.R630W 0.31 deleterious(0) benign(0.035) TCGA-GS-A9U3-01 1 166818482 166818482 G A POGK Silent p.K222K 0.08 TCGA-GS-A9U3-01 1 26584680 26584680 G A CEP85 Missense_Mutation p.E362K 0.21 deleterious(0) probably_damaging(0.995) TCGA-GS-A9U3-01 1 32258931 32258931 C T SPOCD1 Missense_Mutation p.R878Q 0.18 tolerated(0.36) benign(0.34) TCGA-GS-A9U3-01 1 3732930 3732930 C T CEP104 Nonsense_Mutation p.W859* 0.28 TCGA-GS-A9U3-01 1 75038599 75038599 T C C1orf173 Missense_Mutation p.E932G 0.21 deleterious(0.04) benign(0.013) TCGA-GS-A9U3-01 1 85733367 85733367 A T BCL10 Nonsense_Mutation p.C215* 0.18 TCGA-GS-A9U3-01 1 9673044 9673044 G T TMEM201 Missense_Mutation p.G635V 0.08 deleterious(0) possibly_damaging(0.873) TCGA-GS-A9U3-01 20 23028813 23028813 G A THBD Silent p.D443D 0.12 TCGA-GS-A9U3-01 20 3777252 3777252 G A CDC25B Missense_Mutation p.R25H 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GS-A9U3-01 21 32253665 32253665 C A KRTAP11-1 Missense_Mutation p.C60F 0.35 tolerated(0.14) benign(0.235) TCGA-GS-A9U3-01 22 23237676 23237677 - T IGLL5 Frame_Shift_Ins p.W150Lfs*51 0.13 TCGA-GS-A9U3-01 22 38130991 38130991 G T TRIOBP Missense_Mutation p.G1550C 0.11 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-GS-A9U3-01 22 43539209 43539209 G A MCAT Missense_Mutation p.A49V 0.21 tolerated(0.25) benign(0.001) TCGA-GS-A9U3-01 22 44681413 44681413 G A KIAA1644 Missense_Mutation p.P165L 0.12 tolerated(0.4) benign(0.183) TCGA-GS-A9U3-01 22 46860090 46860090 C T CELSR1 Missense_Mutation p.A1233T 0.15 tolerated(0.41) benign(0.036) TCGA-GS-A9U3-01 22 50696370 50696370 C A MAPK12 Intron 0.21 TCGA-GS-A9U3-01 2 11720980 11720980 G A GREB1 Intron 0.14 TCGA-GS-A9U3-01 2 183790360 183790360 A T NCKAP1 3'UTR 0.15 TCGA-GS-A9U3-01 2 196651835 196651835 G A DNAH7 Missense_Mutation p.R3593W 0.14 deleterious(0) probably_damaging(0.999) TCGA-GS-A9U3-01 2 218712997 218712997 G A TNS1 Missense_Mutation p.S623L 0.12 tolerated(0.69) benign(0.029) TCGA-GS-A9U3-01 2 43919728 43919728 T C PLEKHH2 Missense_Mutation p.C88R 0.19 tolerated(0.15) benign(0.037) TCGA-GS-A9U3-01 2 75879766 75879766 A T MRPL19 Missense_Mutation p.N153I 0.14 deleterious(0) probably_damaging(1) TCGA-GS-A9U3-01 2 89160094 89160094 C T IGKJ5 Missense_Mutation p.R9Q 0.08 unknown(0) TCGA-GS-A9U3-01 2 89160111 89160111 G C IGKJ5 Silent p.T3T 0.24 TCGA-GS-A9U3-01 2 89161035 89161035 A T IGKC 5'Flank 0.22 TCGA-GS-A9U3-01 2 89185393 89185393 C G IGKV4-1 Missense_Mutation p.D29E 0.22 tolerated(0.65) benign(0.006) TCGA-GS-A9U3-01 2 89185426 89185426 C T IGKV4-1 Silent p.T40T 0.14 TCGA-GS-A9U3-01 2 89185605 89185605 C T IGKV4-1 Missense_Mutation p.T100I 0.11 deleterious(0) probably_damaging(0.998) TCGA-GS-A9U3-01 2 89185606 89185606 C T IGKV4-1 Silent p.T100T 0.12 TCGA-GS-A9U3-01 3 14220156 14220156 T C LSM3 5'UTR 0.10 TCGA-GS-A9U3-01 3 160395964 160395964 A G ARL14 3'UTR 0.27 TCGA-GS-A9U3-01 3 17051505 17051505 G A PLCL2 Missense_Mutation p.G97R 0.09 deleterious(0.05) probably_damaging(1) TCGA-GS-A9U3-01 3 45636379 45636379 A T LIMD1 Missense_Mutation p.K3M 0.10 deleterious(0) probably_damaging(0.999) TCGA-GS-A9U3-01 3 49940010 49940010 C T MST1R Missense_Mutation p.V345I 0.16 tolerated(0.33) probably_damaging(0.999) TCGA-GS-A9U3-01 3 78667135 78667135 T G ROBO1 Missense_Mutation p.Y1311S 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-GS-A9U3-01 3 78685152 78685152 A G ROBO1 Silent p.N1048N 0.03 TCGA-GS-A9U3-01 3 96706499 96706499 G A EPHA6 Missense_Mutation p.R259H 0.18 deleterious(0) probably_damaging(0.999) TCGA-GS-A9U3-01 4 110667384 110667384 C A CFI Nonsense_Mutation p.E475* 0.04 TCGA-GS-A9U3-01 4 125590963 125590963 G A ANKRD50 Missense_Mutation p.P1157S 0.15 tolerated(0.18) benign(0.041) TCGA-GS-A9U3-01 4 178355570 178355570 C T AGA Missense_Mutation p.G258R 0.09 deleterious(0) probably_damaging(1) TCGA-GS-A9U3-01 5 102203076 102203076 G A PAM Missense_Mutation p.M63I 0.07 deleterious(0) possibly_damaging(0.768) TCGA-GS-A9U3-01 5 140174824 140174824 G A PCDHA2 Missense_Mutation p.R92Q 0.15 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-GS-A9U3-01 5 140236219 140236219 C T PCDHA10 Missense_Mutation p.R196W 0.16 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-GS-A9U3-01 5 140431538 140431538 C T PCDHB1 Silent p.D161D 0.18 TCGA-GS-A9U3-01 5 159781844 159781844 G A C1QTNF2 Nonsense_Mutation p.R104* 0.13 TCGA-GS-A9U3-01 5 427978 427978 G A AHRR Silent p.P277P 0.25 TCGA-GS-A9U3-01 6 142400028 142400028 G T NMBR Silent p.I145I 0.23 TCGA-GS-A9U3-01 6 27835042 27835042 C T HIST1H1B Missense_Mutation p.S89N 0.17 deleterious(0.01) possibly_damaging(0.809) TCGA-GS-A9U3-01 6 30553108 30553108 T A ABCF1 Missense_Mutation p.I488N 0.22 deleterious(0) probably_damaging(0.993) TCGA-GS-A9U3-01 6 70991128 70991128 C A COL9A1 Missense_Mutation p.G281C 0.17 unknown(0) TCGA-GS-A9U3-01 7 77378893 77378893 G A RSBN1L Missense_Mutation p.D286N 0.19 deleterious(0.03) possibly_damaging(0.681) TCGA-GS-A9U3-01 8 144946800 144946800 G A EPPK1 Missense_Mutation p.R208W 0.21 benign(0) TCGA-GS-A9U3-01 8 25230091 25230091 C T DOCK5 Missense_Mutation p.R1181W 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-GS-A9U3-01 8 52252217 52252217 T A PXDNL Missense_Mutation p.E1371D 0.15 tolerated(0.22) benign(0.005) TCGA-GS-A9U3-01 8 55533908 55533908 C T RP1 Missense_Mutation p.L128F 0.21 tolerated(0.16) possibly_damaging(0.536) TCGA-GS-A9U3-01 8 74893545 74893545 C T TMEM70 Silent p.L158L 0.11 TCGA-GS-A9U3-01 8 77767750 77767750 C A ZFHX4 Missense_Mutation p.L2865I 0.18 benign(0.099) TCGA-GS-A9U3-01 9 119097144 119097144 C T PAPPA Silent p.L1134L 0.21 TCGA-GS-A9U3-01 9 136401730 136401730 G A ADAMTSL2 5'UTR 0.13 TCGA-GS-A9U3-01 9 139110640 139110640 G A QSOX2 Missense_Mutation p.T324M 0.25 tolerated(1) benign(0.025) TCGA-GS-A9U3-01 9 71836110 71836110 G A TJP2 Missense_Mutation p.R248H 0.16 deleterious(0.02) probably_damaging(1) TCGA-GS-A9U3-01 X 107147248 107147248 A G MID2 Missense_Mutation p.I293V 0.16 tolerated(0.13) possibly_damaging(0.592) TCGA-GS-A9U3-01 X 129271594 129271594 A T AIFM1 Intron 0.18 TCGA-GS-A9U3-01 X 139587023 139587023 G A SOX3 Missense_Mutation p.A68V 0.07 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-GS-A9U3-01 X 150348455 150348455 C T GPR50 Missense_Mutation p.L134F 0.18 tolerated(0.17) benign(0.277) TCGA-GS-A9U3-01 X 150573426 150573426 G A VMA21 Missense_Mutation p.A68T 0.24 deleterious(0) probably_damaging(0.996) TCGA-GS-A9U3-01 X 41075218 41075218 T G USP9X Missense_Mutation p.F1800V 0.21 deleterious(0) probably_damaging(0.99) TCGA-GS-A9U3-01 X 56590442 56590442 T A UBQLN2 Missense_Mutation p.F46I 0.32 tolerated(0.6) possibly_damaging(0.709) TCGA-GS-A9U3-01 X 64141833 64141833 C T ZC4H2 Missense_Mutation p.R30H 0.17 deleterious(0.01) probably_damaging(0.923) TCGA-GS-A9U3-01 X 69080687 69080687 G A EDA Intron 0.08 TCGA-GS-A9U3-01 X 84586065 84586065 G T POF1B Silent p.G248G 0.16 TCGA-GS-A9U3-01 X 85119697 85119697 C A CHM Missense_Mutation p.A634S 0.07 tolerated(0.19) benign(0.033) TCGA-GS-A9U3-01 X 95939969 95939969 T A DIAPH2 5'UTR 0.29 TCGA-GS-A9U4-01 10 131641420 131641420 C T EBF3 Missense_Mutation p.G383E 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-GS-A9U4-01 10 70446129 70446129 G A TET1 Missense_Mutation p.R1690Q 0.07 tolerated(0.05) possibly_damaging(0.47) TCGA-GS-A9U4-01 11 2291702 2291702 C T ASCL2 5'UTR 0.17 TCGA-GS-A9U4-01 11 33581343 33581343 G A KIAA1549L Missense_Mutation p.V1005M 0.18 deleterious(0) probably_damaging(0.997) TCGA-GS-A9U4-01 11 47178653 47178653 G A C11orf49 Silent p.S177S 0.10 TCGA-GS-A9U4-01 11 57081004 57081004 G A TNKS1BP1 Silent p.T386T 0.25 TCGA-GS-A9U4-01 11 65404406 65404406 G A PCNXL3 Missense_Mutation p.R2021H 0.14 deleterious_low_confidence(0.02) benign(0.274) TCGA-GS-A9U4-01 12 20905364 20905364 A C SLCO1C1 Missense_Mutation p.K715T 0.05 tolerated_low_confidence(0.09) benign(0.007) TCGA-GS-A9U4-01 12 80714313 80714313 G A OTOGL Missense_Mutation p.R1296Q 0.09 tolerated(0.35) benign(0.015) TCGA-GS-A9U4-01 14 56079010 56079010 C T KTN1 Nonsense_Mutation p.R82* 0.13 TCGA-GS-A9U4-01 15 35530121 35530121 G A ANP32AP1 RNA 0.08 TCGA-GS-A9U4-01 15 67629359 67629359 C T IQCH Missense_Mutation p.T145M 0.09 tolerated(0.09) benign(0.322) TCGA-GS-A9U4-01 16 15818612 15818612 C T MYH11 Silent p.T1343T 0.12 TCGA-GS-A9U4-01 16 1961954 1961954 G A HS3ST6 Silent p.A191A 0.10 TCGA-GS-A9U4-01 16 57918303 57918303 G A CNGB1 Missense_Mutation p.T1174M 0.25 tolerated(0.2) benign(0.001) TCGA-GS-A9U4-01 16 72198813 72198813 C T PMFBP1 Silent p.A5A 0.17 TCGA-GS-A9U4-01 16 9916205 9916205 C T GRIN2A Missense_Mutation p.R695Q 0.06 deleterious(0.01) probably_damaging(0.955) TCGA-GS-A9U4-01 17 11461117 11461117 C T SHISA6 Silent p.P384P 0.08 TCGA-GS-A9U4-01 17 8455392 8455392 C T MYH10 Silent p.L297L 0.10 TCGA-GS-A9U4-01 19 15276271 15276271 G T NOTCH3 Missense_Mutation p.T1908K 0.18 deleterious(0) probably_damaging(0.951) TCGA-GS-A9U4-01 19 2247610 2247610 C T SF3A2 Silent p.I188I 0.08 TCGA-GS-A9U4-01 19 38993204 38993204 G A RYR1 Missense_Mutation p.V2558M 0.12 benign(0.147) TCGA-GS-A9U4-01 1 35370945 35370945 G A DLGAP3 Missense_Mutation p.P14S 0.12 tolerated_low_confidence(0.41) benign(0.001) TCGA-GS-A9U4-01 1 70832174 70832174 C G HHLA3 Missense_Mutation p.L70V 0.06 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-GS-A9U4-01 1 7796527 7796527 C G CAMTA1 Missense_Mutation p.R1064G 0.10 deleterious(0) probably_damaging(0.994) TCGA-GS-A9U4-01 1 89271287 89271287 C G PKN2 Missense_Mutation p.Q537E 0.06 tolerated(0.82) benign(0.09) TCGA-GS-A9U4-01 20 33588659 33588659 G A MYH7B Missense_Mutation p.R1798Q 0.11 probably_damaging(0.975) TCGA-GS-A9U4-01 20 47991054 47991054 A G KCNB1 Missense_Mutation p.L348P 0.08 deleterious(0) probably_damaging(1) TCGA-GS-A9U4-01 21 47685853 47685853 C T MCM3AP Missense_Mutation p.G1006D 0.07 tolerated(0.4) benign(0.202) TCGA-GS-A9U4-01 2 86439430 86439430 C T MRPL35 3'UTR 0.11 TCGA-GS-A9U4-01 2 89246968 89246968 G A IGKV1-5 Missense_Mutation p.L68F 0.09 tolerated(0.05) benign(0.068) TCGA-GS-A9U4-01 3 124149590 124149590 C T KALRN Missense_Mutation p.R931W 0.07 deleterious(0) probably_damaging(0.986) TCGA-GS-A9U4-01 3 87302944 87302944 G A CHMP2B Missense_Mutation p.R205Q 0.06 tolerated(0.21) possibly_damaging(0.805) TCGA-GS-A9U4-01 4 170509869 170509869 C T NEK1 Missense_Mutation p.R161Q 0.13 deleterious(0.02) probably_damaging(1) TCGA-GS-A9U4-01 4 70812091 70812091 A G CSN1S1 3'UTR 0.09 TCGA-GS-A9U4-01 5 1057726 1057726 G T SLC12A7 Silent p.T962T 0.11 TCGA-GS-A9U4-01 5 167303127 167303127 C T TENM2 Silent p.N213N 0.06 TCGA-GS-A9U4-01 5 71495880 71495880 A C MAP1B Missense_Mutation p.K2233T 0.11 probably_damaging(0.995) TCGA-GS-A9U4-01 6 33632987 33632987 G A ITPR3 Missense_Mutation p.R469H 0.18 deleterious(0) probably_damaging(0.999) TCGA-GS-A9U4-01 6 43172801 43172801 G T CUL9 Missense_Mutation p.R1527L 0.08 deleterious(0.02) probably_damaging(0.917) TCGA-GS-A9U4-01 6 43412040 43412040 G A ABCC10 Missense_Mutation p.V880M 0.18 tolerated(0.14) benign(0.007) TCGA-GS-A9U4-01 7 99757593 99757593 G C GAL3ST4 Silent p.T473T 0.09 TCGA-GS-A9U4-01 8 54727263 54727263 T C ATP6V1H Missense_Mutation p.N162D 0.03 tolerated(0.4) benign(0.186) TCGA-GS-A9U4-01 9 33900200 33900200 A T UBE2R2 Missense_Mutation p.H98L 0.07 deleterious(0) possibly_damaging(0.817) TCGA-GS-A9U4-01 9 73225579 73225579 G T TRPM3 Silent p.G859G 0.09 TCGA-GS-A9U4-01 9 73225580 73225580 C G TRPM3 Missense_Mutation p.G859A 0.09 tolerated(0.09) probably_damaging(0.93) TCGA-GS-A9U4-01 X 102755451 102755451 G A RAB40A Silent p.T78T 0.08 TCGA-GS-A9U4-01 X 18665328 18665328 G A RS1 Silent p.L103L 0.14 TCGA-GS-A9U4-01 X 26213610 26213610 A T MAGEB6 3'UTR 0.10 TCGA-GS-A9U4-01 X 70352367 70352367 G A MED12 Missense_Mutation p.R1465H 0.10 probably_damaging(0.948) TCGA-RQ-A68N-01 10 104160708 104160708 G A NFKB2 Missense_Mutation p.R658Q 0.30 tolerated(0.17) benign(0.201) TCGA-RQ-A68N-01 10 105005643 105005643 C T RPEL1 5'Flank 0.24 TCGA-RQ-A68N-01 10 115412746 115412746 A G NRAP Missense_Mutation p.M173T 0.34 tolerated(0.67) benign(0.434) TCGA-RQ-A68N-01 10 132896590 132896590 T G TCERG1L Missense_Mutation p.E528A 0.32 deleterious(0.04) probably_damaging(0.983) TCGA-RQ-A68N-01 10 24880821 24880821 G A ARHGAP21 Nonsense_Mutation p.Q1333* 0.12 TCGA-RQ-A68N-01 10 26446318 26446318 G A MYO3A Missense_Mutation p.R958H 0.46 deleterious(0) probably_damaging(0.99) TCGA-RQ-A68N-01 10 44868752 44868752 G A CXCL12 3'Flank 0.10 TCGA-RQ-A68N-01 10 61028362 61028362 C T FAM13C Missense_Mutation p.R298Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-RQ-A68N-01 10 61894026 61894026 T C ANK3 Intron 0.27 TCGA-RQ-A68N-01 10 68940122 68940122 C T CTNNA3 Missense_Mutation p.A334T 0.14 tolerated(0.11) benign(0.229) TCGA-RQ-A68N-01 10 73498388 73498388 C T CDH23 Missense_Mutation p.A1453V 0.23 tolerated(0.08) benign(0.248) TCGA-RQ-A68N-01 10 90733127 90733127 A G ACTA2 Intron 0.22 TCGA-RQ-A68N-01 11 104899975 104899975 C T CASP1 Nonsense_Mutation p.W294* 0.17 TCGA-RQ-A68N-01 11 108380629 108380629 C T EXPH5 Missense_Mutation p.G1869R 0.26 tolerated(1) benign(0.003) TCGA-RQ-A68N-01 11 115110994 115110994 G A CADM1 Missense_Mutation p.P91S 0.34 deleterious(0.05) possibly_damaging(0.769) TCGA-RQ-A68N-01 11 118463477 118463477 G A ARCN1 Silent p.L346L 0.30 TCGA-RQ-A68N-01 11 121008699 121008699 G A TECTA Missense_Mutation p.V1171M 0.21 tolerated(0.29) possibly_damaging(0.79) TCGA-RQ-A68N-01 11 26700336 26700336 G A SLC5A12 Missense_Mutation p.S501L 0.06 deleterious(0) possibly_damaging(0.559) TCGA-RQ-A68N-01 11 26743090 26743090 T C SLC5A12 Missense_Mutation p.T58A 0.47 tolerated(0.2) possibly_damaging(0.623) TCGA-RQ-A68N-01 11 5270819 5270819 G T HBG1 Missense_Mutation p.L32I 0.10 deleterious(0.01) probably_damaging(0.938) TCGA-RQ-A68N-01 11 5565873 5565873 G T OR52H1 Missense_Mutation p.A294E 0.14 deleterious(0.01) possibly_damaging(0.69) TCGA-RQ-A68N-01 11 55860964 55860964 T C OR8I2 Missense_Mutation p.F61L 0.28 deleterious(0.01) benign(0.005) TCGA-RQ-A68N-01 11 6221264 6221264 C T OR52W1 Missense_Mutation p.H271Y 0.15 deleterious(0.01) benign(0.209) TCGA-RQ-A68N-01 11 63994599 63994599 C A NUDT22 Missense_Mutation p.P159T 0.33 deleterious(0) probably_damaging(0.956) TCGA-RQ-A68N-01 11 64662599 64662599 C G ATG2A Missense_Mutation p.G1888A 0.24 deleterious(0.01) probably_damaging(0.974) TCGA-RQ-A68N-01 11 6635721 6635721 G A TPP1 3'UTR 0.08 TCGA-RQ-A68N-01 11 7112008 7112008 T C RBMXL2 3'UTR 0.44 TCGA-RQ-A68N-01 12 10560927 10560927 C G KLRC4 Splice_Site p.X114_splice 0.27 TCGA-RQ-A68N-01 12 109677680 109677680 C T ACACB Silent p.L1570L 0.08 TCGA-RQ-A68N-01 12 113495875 113495875 G C DTX1 5'UTR 0.11 TCGA-RQ-A68N-01 12 113495951 113495951 C T DTX1 5'UTR 0.32 TCGA-RQ-A68N-01 12 130648918 130648918 G A FZD10 Silent p.A477A 0.13 TCGA-RQ-A68N-01 12 39299291 39299291 G T CPNE8 Missense_Mutation p.Q16K 0.34 tolerated(0.42) benign(0.002) TCGA-RQ-A68N-01 12 52761179 52761179 C T KRT85 Missense_Mutation p.R4H 0.25 tolerated(0.13) probably_damaging(0.991) TCGA-RQ-A68N-01 12 53038781 53038781 C T KRT2 3'UTR 0.06 TCGA-RQ-A68N-01 12 58131511 58131511 G A AGAP2 Silent p.T173T 0.12 TCGA-RQ-A68N-01 12 76424483 76424483 G A PHLDA1 Nonsense_Mutation p.Q347* 0.09 TCGA-RQ-A68N-01 12 91348068 91348068 C T CCER1 Missense_Mutation p.R151H 0.29 deleterious(0) probably_damaging(0.923) TCGA-RQ-A68N-01 12 92539171 92539171 C T BTG1 Silent p.L47L 0.42 TCGA-RQ-A68N-01 13 112722083 112722083 C T SOX1 Silent p.G37G 0.38 TCGA-RQ-A68N-01 13 115004951 115004951 A T CDC16 Missense_Mutation p.M123L 0.17 tolerated(0.45) benign(0) TCGA-RQ-A68N-01 13 25161399 25161399 A G RP11-556N21.1 RNA 0.23 TCGA-RQ-A68N-01 13 28971155 28971155 A C FLT1 Missense_Mutation p.I534M 0.18 deleterious(0.02) benign(0.012) TCGA-RQ-A68N-01 13 46543189 46543189 G A ZC3H13 Nonsense_Mutation p.R1164* 0.12 TCGA-RQ-A68N-01 13 47224430 47224430 C A LRCH1 Silent p.V134V 0.18 TCGA-RQ-A68N-01 13 47409325 47409325 C A HTR2A Nonsense_Mutation p.E355* 0.14 TCGA-RQ-A68N-01 13 67205459 67205459 C A PCDH9 Missense_Mutation p.G1075C 0.35 deleterious(0.01) probably_damaging(0.947) TCGA-RQ-A68N-01 13 84454325 84454325 G A SLITRK1 Missense_Mutation p.R440W 0.37 deleterious(0) possibly_damaging(0.861) TCGA-RQ-A68N-01 13 99091388 99091388 C T FARP1 Missense_Mutation p.R791W 0.37 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 14 106110418 106110418 G A IGHG2 Silent p.C106C 0.35 TCGA-RQ-A68N-01 14 106110947 106110947 C A IGHG2 Nonsense_Mutation p.G61* 0.27 TCGA-RQ-A68N-01 14 106111066 106111066 C T IGHG2 Missense_Mutation p.S21N 0.22 deleterious(0.03) benign(0.005) TCGA-RQ-A68N-01 14 106967489 106967489 A G IGHV1-46 5'UTR 0.18 TCGA-RQ-A68N-01 14 106967536 106967536 G A IGHV1-46 5'UTR 0.26 TCGA-RQ-A68N-01 14 107169967 107169967 C T IGHV1-69 Silent p.L105L 0.15 TCGA-RQ-A68N-01 14 107169991 107169991 T A IGHV1-69 Silent p.T97T 0.20 TCGA-RQ-A68N-01 14 107170084 107170084 C T IGHV1-69 Nonsense_Mutation p.W66* 0.25 TCGA-RQ-A68N-01 14 107170120 107170120 G A IGHV1-69 Silent p.S54S 0.23 TCGA-RQ-A68N-01 14 107178836 107178836 T G IGHV2-70 Missense_Mutation p.Y114S 0.27 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 14 107178874 107178874 A C IGHV2-70 Silent p.L101L 0.13 TCGA-RQ-A68N-01 14 107178912 107178912 T G IGHV2-70 Missense_Mutation p.T89P 0.30 deleterious(0.01) possibly_damaging(0.584) TCGA-RQ-A68N-01 14 107178928 107178950 AGATGTGCTGTAGTATTTATCAT - IGHV2-70 Frame_Shift_Del p.D76Afs*? 0.10 TCGA-RQ-A68N-01 14 107179030 107179030 G T IGHV2-70 Missense_Mutation p.S49R 0.19 deleterious(0.01) benign(0.006) TCGA-RQ-A68N-01 14 107179056 107179056 A G IGHV2-70 Missense_Mutation p.C41R 0.17 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 14 107179064 107179064 G A IGHV2-70 Missense_Mutation p.T38I 0.26 deleterious(0) possibly_damaging(0.603) TCGA-RQ-A68N-01 14 107179094 107179094 G T IGHV2-70 Missense_Mutation p.P28H 0.18 deleterious(0) probably_damaging(0.999) TCGA-RQ-A68N-01 14 107179121 107179121 G C IGHV2-70 Missense_Mutation p.S19C 0.17 deleterious(0.01) possibly_damaging(0.827) TCGA-RQ-A68N-01 14 107179128 107179128 C T IGHV2-70 Missense_Mutation p.V17I 0.24 tolerated(0.13) benign(0.196) TCGA-RQ-A68N-01 14 24771450 24771450 A G NOP9 Silent p.L321L 0.40 TCGA-RQ-A68N-01 14 29238106 29238133 AAGGTGTGGAGTGTCAGCGAGGTGCAAT - FOXG1 3'UTR 0.38 TCGA-RQ-A68N-01 14 66209049 66209049 C A FUT8 Missense_Mutation p.T550K 0.04 tolerated(0.3) benign(0.106) TCGA-RQ-A68N-01 14 67147830 67147830 G T GPHN Missense_Mutation p.D24Y 0.17 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 14 67390952 67390952 C T GPHN Silent p.H257H 0.05 TCGA-RQ-A68N-01 14 71500228 71500228 G A PCNX Missense_Mutation p.R1214Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-RQ-A68N-01 14 74970174 74970174 G A LTBP2 Missense_Mutation p.T1573M 0.20 tolerated(0.27) benign(0.002) TCGA-RQ-A68N-01 14 77762563 77762563 A G POMT2 Missense_Mutation p.Y354H 0.12 deleterious(0) probably_damaging(0.997) TCGA-RQ-A68N-01 14 79432416 79432416 C T NRXN3 Missense_Mutation p.T442M 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-RQ-A68N-01 14 99640652 99640652 G A BCL11B Missense_Mutation p.R841C 0.21 deleterious(0) benign(0.434) TCGA-RQ-A68N-01 15 35530200 35530200 G A ANP32AP1 RNA 0.23 TCGA-RQ-A68N-01 15 40453231 40453231 G T BUB1B 5'UTR 0.36 TCGA-RQ-A68N-01 15 63829314 63829314 G T USP3 Missense_Mutation p.Q81H 0.35 tolerated(0.27) benign(0.011) TCGA-RQ-A68N-01 15 71184490 71184490 C T THAP10 Missense_Mutation p.R41H 0.36 deleterious(0.05) benign(0.111) TCGA-RQ-A68N-01 15 75500343 75500343 C T C15orf39 Nonsense_Mutation p.R652* 0.28 TCGA-RQ-A68N-01 15 81188310 81188310 C T KIAA1199 Silent p.V440V 0.26 TCGA-RQ-A68N-01 15 83499809 83499809 C T WHAMM Silent p.S700S 0.43 TCGA-RQ-A68N-01 15 83932823 83932823 T A BNC1 Missense_Mutation p.M394L 0.28 deleterious(0) probably_damaging(0.972) TCGA-RQ-A68N-01 16 15501998 15501998 C G MPV17L 3'UTR 0.16 TCGA-RQ-A68N-01 16 23498055 23498055 C T GGA2 Silent p.R212R 0.24 TCGA-RQ-A68N-01 16 30594344 30594344 C T ZNF785 Missense_Mutation p.G252E 0.14 deleterious(0) probably_damaging(0.999) TCGA-RQ-A68N-01 16 58030541 58030541 C T ZNF319 Silent p.K543K 0.11 TCGA-RQ-A68N-01 16 66646592 66646592 G A CMTM3 3'UTR 0.22 TCGA-RQ-A68N-01 16 787323 787323 C G NARFL Missense_Mutation p.G57R 0.47 tolerated(0.2) benign(0.008) TCGA-RQ-A68N-01 16 85024162 85024162 G A ZDHHC7 Silent p.D21D 0.42 TCGA-RQ-A68N-01 17 10608524 10608524 T C ADPRM Missense_Mutation p.M94T 0.05 deleterious(0.01) possibly_damaging(0.884) TCGA-RQ-A68N-01 17 20353278 20353278 G A LGALS9B 3'UTR 0.23 TCGA-RQ-A68N-01 17 30818042 30818042 G T CDK5R1 3'UTR 0.20 TCGA-RQ-A68N-01 17 31618815 31618815 G A ASIC2 Missense_Mutation p.R107C 0.10 tolerated(0.08) probably_damaging(1) TCGA-RQ-A68N-01 17 32908070 32908070 G A TMEM132E 5'UTR 0.12 TCGA-RQ-A68N-01 17 35609904 35609904 C T ACACA Missense_Mutation p.E629K 0.18 deleterious(0) probably_damaging(0.99) TCGA-RQ-A68N-01 17 40485746 40485746 G A STAT3 Missense_Mutation p.H332Y 0.32 deleterious(0) probably_damaging(0.962) TCGA-RQ-A68N-01 17 48226670 48226670 C T PPP1R9B Silent p.E401E 0.13 TCGA-RQ-A68N-01 17 4838261 4838261 A G GP1BA 3'UTR 0.23 TCGA-RQ-A68N-01 17 61622590 61622590 C G KCNH6 Missense_Mutation p.P886A 0.53 tolerated_low_confidence(0.25) benign(0.001) TCGA-RQ-A68N-01 17 62006799 62006799 A T CD79B Missense_Mutation p.Y197N 0.40 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 17 62006833 62006833 A G CD79B Silent p.D185D 0.38 TCGA-RQ-A68N-01 17 7124102 7124103 AC - ACADVL Frame_Shift_Del p.Q123Vfs*3 0.31 TCGA-RQ-A68N-01 17 7221436 7221436 G C NEURL4 Missense_Mutation p.S1336R 0.10 tolerated(0.09) benign(0.079) TCGA-RQ-A68N-01 17 80121138 80121138 G A CCDC57 Missense_Mutation p.L660F 0.36 deleterious(0.03) benign(0.258) TCGA-RQ-A68N-01 17 80441691 80441691 C A NARF Intron 0.47 TCGA-RQ-A68N-01 18 28576767 28576767 C T DSC3 Missense_Mutation p.R828H 0.25 tolerated(0.06) benign(0.14) TCGA-RQ-A68N-01 18 33557394 33557394 A T C18orf21 Missense_Mutation p.N108Y 0.07 deleterious(0) possibly_damaging(0.861) TCGA-RQ-A68N-01 18 44152070 44152070 C T LOXHD1 Missense_Mutation p.D676N 0.14 tolerated(0.2) possibly_damaging(0.908) TCGA-RQ-A68N-01 18 6138191 6138191 A G L3MBTL4 Splice_Site p.X400_splice 0.35 TCGA-RQ-A68N-01 19 17897428 17897428 C T FCHO1 Silent p.S824S 0.77 TCGA-RQ-A68N-01 19 22156967 22156967 C T ZNF208 Missense_Mutation p.C290Y 0.55 deleterious(0.02) possibly_damaging(0.593) TCGA-RQ-A68N-01 19 2337606 2337606 C T SPPL2B RNA 0.58 TCGA-RQ-A68N-01 19 33642122 33642122 G T WDR88 Missense_Mutation p.D239Y 0.64 deleterious(0) probably_damaging(0.998) TCGA-RQ-A68N-01 19 34791796 34791796 G A KIAA0355 Missense_Mutation p.A140T 0.18 tolerated_low_confidence(0.13) probably_damaging(0.982) TCGA-RQ-A68N-01 19 46916515 46916515 G A CCDC8 5'UTR 0.25 TCGA-RQ-A68N-01 19 48609797 48609797 G A PLA2G4C Silent p.T17T 0.62 TCGA-RQ-A68N-01 19 54392899 54392899 G A PRKCG Missense_Mutation p.R98Q 0.71 tolerated(0.1) benign(0.097) TCGA-RQ-A68N-01 19 54648016 54648016 G A CNOT3 Missense_Mutation p.S144N 0.21 deleterious(0) probably_damaging(0.989) TCGA-RQ-A68N-01 19 6696418 6696418 G A C3 Silent p.T974T 0.07 TCGA-RQ-A68N-01 19 9939057 9939057 G C UBL5 Missense_Mutation p.R15P 0.13 tolerated(0.12) benign(0.003) TCGA-RQ-A68N-01 1 101004706 101004706 C T GPR88 Silent p.L62L 0.41 TCGA-RQ-A68N-01 1 112269753 112269753 C T FAM212B Missense_Mutation p.R244H 0.69 tolerated(0.13) probably_damaging(0.982) TCGA-RQ-A68N-01 1 117113594 117113594 T C CD58 Translation_Start_Site p.M1? 0.55 deleterious(0) probably_damaging(0.969) TCGA-RQ-A68N-01 1 154209612 154209612 A G UBAP2L Missense_Mutation p.S235G 0.54 tolerated(1) unknown(0) TCGA-RQ-A68N-01 1 157665375 157665375 G A FCRL3 Silent p.L385L 0.56 TCGA-RQ-A68N-01 1 160063649 160063649 C T IGSF8 Missense_Mutation p.R252Q 0.53 tolerated(0.56) benign(0.007) TCGA-RQ-A68N-01 1 197390429 197390429 G A CRB1 Missense_Mutation p.D491N 0.56 tolerated(1) benign(0) TCGA-RQ-A68N-01 1 203274836 203274836 G A BTG2 Silent p.R34R 0.33 TCGA-RQ-A68N-01 1 43779453 43779453 G T TIE1 Silent p.L741L 0.64 TCGA-RQ-A68N-01 1 50574828 50574828 G A ELAVL4 Intron 0.60 TCGA-RQ-A68N-01 1 52253640 52253640 C T OSBPL9 3'UTR 0.63 TCGA-RQ-A68N-01 1 55622939 55622939 A C USP24 Missense_Mutation p.I444M 0.61 deleterious(0) probably_damaging(0.929) TCGA-RQ-A68N-01 1 57378088 57378088 C T C8A Missense_Mutation p.H465Y 0.60 tolerated(0.57) benign(0.014) TCGA-RQ-A68N-01 1 70611262 70611262 T A LRRC40 3'UTR 0.78 TCGA-RQ-A68N-01 1 8390800 8390800 G A SLC45A1 Missense_Mutation p.R416H 0.58 tolerated(0.14) benign(0.001) TCGA-RQ-A68N-01 20 2312744 2312744 A G TGM3 Missense_Mutation p.E477G 0.39 tolerated(0.15) benign(0.002) TCGA-RQ-A68N-01 20 25457204 25457204 C T NINL Missense_Mutation p.R908H 0.24 tolerated(0.84) benign(0) TCGA-RQ-A68N-01 20 34775618 34775618 C T EPB41L1 Missense_Mutation p.A269V 0.23 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 20 58571551 58571551 C A CDH26 Intron 0.25 TCGA-RQ-A68N-01 20 61637371 61637371 C T BHLHE23 3'UTR 0.28 TCGA-RQ-A68N-01 20 62328311 62328311 G T TNFRSF6B Missense_Mutation p.R64L 0.30 deleterious(0.03) possibly_damaging(0.483) TCGA-RQ-A68N-01 20 7967957 7967957 A G TMX4 Missense_Mutation p.V198A 0.27 deleterious(0.02) benign(0.066) TCGA-RQ-A68N-01 20 8741074 8741074 A C PLCB1 Missense_Mutation p.K893Q 0.16 tolerated(0.78) benign(0.029) TCGA-RQ-A68N-01 20 9288481 9288481 T G PLCB4 Missense_Mutation p.F7C 0.26 deleterious(0) probably_damaging(0.999) TCGA-RQ-A68N-01 21 30909274 30909274 G T GRIK1 3'UTR 0.44 TCGA-RQ-A68N-01 21 33318469 33318469 C T HUNK Silent p.I244I 0.18 TCGA-RQ-A68N-01 21 43161063 43161063 G T RIPK4 Missense_Mutation p.Q764K 0.39 tolerated(0.11) possibly_damaging(0.466) TCGA-RQ-A68N-01 21 43256244 43256244 G A PRDM15 Missense_Mutation p.S785F 0.21 deleterious(0) probably_damaging(0.998) TCGA-RQ-A68N-01 21 46842558 46842558 G A COL18A1-AS1 RNA 0.31 TCGA-RQ-A68N-01 22 19950249 19950249 C T COMT Missense_Mutation p.A67V 0.07 deleterious(0.03) probably_damaging(0.987) TCGA-RQ-A68N-01 22 23223347 23223347 C T IGLV3-1 Silent p.I39I 0.31 TCGA-RQ-A68N-01 22 23223381 23223381 G C IGLV3-1 Missense_Mutation p.A51P 0.13 deleterious(0.02) benign(0.048) TCGA-RQ-A68N-01 22 23223395 23223395 G C IGLV3-1 Missense_Mutation p.Q55H 0.28 deleterious(0) probably_damaging(0.912) TCGA-RQ-A68N-01 22 23223432 23223432 C T IGLV3-1 Nonsense_Mutation p.Q68* 0.22 TCGA-RQ-A68N-01 22 23223480 23223480 A G IGLV3-1 Missense_Mutation p.N84D 0.32 deleterious(0.05) benign(0.048) TCGA-RQ-A68N-01 22 23223562 23223562 G A IGLV3-1 Missense_Mutation p.S111N 0.34 tolerated(0.13) benign(0.031) TCGA-RQ-A68N-01 22 23230120 23230120 C T IGLL5 5'UTR 0.17 TCGA-RQ-A68N-01 22 23230138 23230138 C T IGLL5 5'UTR 0.31 TCGA-RQ-A68N-01 22 23230188 23230188 C T IGLL5 5'UTR 0.41 TCGA-RQ-A68N-01 22 23230191 23230191 A T IGLL5 5'UTR 0.42 TCGA-RQ-A68N-01 22 23230326 23230326 G A IGLL5 Silent p.L31L 0.22 TCGA-RQ-A68N-01 22 23230327 23230327 G T IGLL5 Missense_Mutation p.A32S 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.632) TCGA-RQ-A68N-01 22 23230328 23230328 C T IGLL5 Missense_Mutation p.A32V 0.22 tolerated_low_confidence(0.05) benign(0.023) TCGA-RQ-A68N-01 22 23230403 23230403 G A IGLL5 Missense_Mutation p.G57E 0.40 tolerated_low_confidence(0.12) benign(0.019) TCGA-RQ-A68N-01 22 23230409 23230409 G A IGLL5 Missense_Mutation p.S59N 0.38 deleterious_low_confidence(0.02) benign(0.002) TCGA-RQ-A68N-01 22 24583607 24583607 C T SUSD2 Nonsense_Mutation p.Q654* 0.35 TCGA-RQ-A68N-01 22 32841910 32841910 C A BPIFC Missense_Mutation p.D150Y 0.12 deleterious(0.01) possibly_damaging(0.724) TCGA-RQ-A68N-01 22 50966942 50966942 T A TYMP Missense_Mutation p.Q172L 0.33 deleterious(0) benign(0.416) TCGA-RQ-A68N-01 2 121708912 121708912 C T GLI2 Silent p.N116N 0.18 TCGA-RQ-A68N-01 2 125627339 125627339 G T CNTNAP5 Nonsense_Mutation p.E1145* 0.10 TCGA-RQ-A68N-01 2 130949589 130949589 G A TUBA3E Missense_Mutation p.R390C 0.30 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-RQ-A68N-01 2 133489555 133489555 C T NCKAP5 Missense_Mutation p.R1733H 0.19 deleterious(0) probably_damaging(0.988) TCGA-RQ-A68N-01 2 152420390 152420390 C T NEB Missense_Mutation p.E6176K 0.18 possibly_damaging(0.725) TCGA-RQ-A68N-01 2 170145591 170145591 C T LRP2 Silent p.A329A 0.37 TCGA-RQ-A68N-01 2 173882186 173882186 C T RAPGEF4 Silent p.G654G 0.20 TCGA-RQ-A68N-01 2 182402801 182402801 C T CERKL 3'Flank 0.21 TCGA-RQ-A68N-01 2 20885366 20885366 G A C2orf43 3'UTR 0.28 TCGA-RQ-A68N-01 2 232393132 232393132 G A NMUR1 Silent p.H200H 0.30 TCGA-RQ-A68N-01 2 238253001 238253001 C T COL6A3 Missense_Mutation p.A2554T 0.13 unknown(0) TCGA-RQ-A68N-01 2 239162025 239162025 G A PER2 Missense_Mutation p.A880V 0.43 tolerated(0.31) benign(0.004) TCGA-RQ-A68N-01 2 28772953 28772953 T G PLB1 Splice_Site p.X361_splice 0.28 TCGA-RQ-A68N-01 2 32409346 32409346 A G SLC30A6 Missense_Mutation p.M115V 0.03 tolerated(0.29) benign(0.001) TCGA-RQ-A68N-01 2 40404900 40404900 C T SLC8A1 Intron 0.30 TCGA-RQ-A68N-01 2 73646370 73646370 G A ALMS1 Silent p.L190L 0.30 TCGA-RQ-A68N-01 2 86459825 86459825 G A REEP1 Missense_Mutation p.P180L 0.26 deleterious(0.04) probably_damaging(0.913) TCGA-RQ-A68N-01 2 89156973 89156973 G A IGKC Silent p.S75S 0.17 TCGA-RQ-A68N-01 2 89161050 89161050 C T IGKJ2 Silent p.K9K 0.42 TCGA-RQ-A68N-01 2 89185615 89185615 C T IGKV4-1 Silent p.S103S 0.50 TCGA-RQ-A68N-01 2 89246859 89246859 T C IGKV1-5 Missense_Mutation p.D104G 0.54 deleterious(0) probably_damaging(0.956) TCGA-RQ-A68N-01 2 89417260 89417260 A G IGKV1-17 Missense_Mutation p.F17L 0.25 tolerated(1) benign(0) TCGA-RQ-A68N-01 2 89442067 89442067 C T IGKV3-20 Missense_Mutation p.G113D 0.25 tolerated(0.28) benign(0.006) TCGA-RQ-A68N-01 2 89442327 89442327 C G IGKV3-20 Missense_Mutation p.Q26H 0.30 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 2 89475825 89475825 G A IGKV2-24 Missense_Mutation p.A116V 0.43 tolerated(0.35) benign(0.006) TCGA-RQ-A68N-01 2 89567937 89567937 A G IGKV1-33 Missense_Mutation p.Y58H 0.16 deleterious(0.02) benign(0.213) TCGA-RQ-A68N-01 2 89567957 89567957 A G IGKV1-33 Missense_Mutation p.I51T 0.18 deleterious(0.03) benign(0.176) TCGA-RQ-A68N-01 3 129266464 129266464 C T H1FOO Missense_Mutation p.R107C 0.52 deleterious(0) possibly_damaging(0.883) TCGA-RQ-A68N-01 3 142123761 142123761 C T XRN1 Missense_Mutation p.R624Q 0.20 tolerated(0.18) benign(0.004) TCGA-RQ-A68N-01 3 152553954 152553954 G A P2RY1 Missense_Mutation p.R128K 0.44 deleterious(0.01) probably_damaging(0.987) TCGA-RQ-A68N-01 3 176750838 176750838 T C TBL1XR1 Missense_Mutation p.Y446C 0.40 deleterious(0.01) possibly_damaging(0.901) TCGA-RQ-A68N-01 3 195269988 195269988 G - PPP1R2 5'UTR 0.21 TCGA-RQ-A68N-01 3 20187822 20187822 G T KAT2B Silent p.L673L 0.05 TCGA-RQ-A68N-01 3 27216181 27216181 G T NEK10 Silent p.I883I 0.40 TCGA-RQ-A68N-01 3 28373244 28373244 A G AZI2 Intron 0.31 TCGA-RQ-A68N-01 3 32022485 32022485 C T OSBPL10 Missense_Mutation p.A63T 0.50 tolerated_low_confidence(0.19) unknown(0) TCGA-RQ-A68N-01 3 32859663 32859663 G A TRIM71 Missense_Mutation p.A31T 0.53 tolerated_low_confidence(1) unknown(0) TCGA-RQ-A68N-01 3 38182641 38182641 T C MYD88 Missense_Mutation p.L273P 0.36 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 3 46010021 46010021 G T FYCO1 Missense_Mutation p.Q269K 0.13 tolerated(0.12) benign(0) TCGA-RQ-A68N-01 3 52817273 52817273 G T ITIH1 Missense_Mutation p.L381F 0.44 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 3 58508290 58508290 G A ACOX2 Missense_Mutation p.T522M 0.31 tolerated(0.65) benign(0.044) TCGA-RQ-A68N-01 3 77693936 77693936 G T ROBO2 Missense_Mutation p.G1355V 0.41 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-RQ-A68N-01 4 126329648 126329648 T A FAT4 Missense_Mutation p.N1873K 0.11 probably_damaging(0.991) TCGA-RQ-A68N-01 4 126384754 126384754 G A FAT4 Missense_Mutation p.C3944Y 0.30 benign(0.001) TCGA-RQ-A68N-01 4 153875426 153875426 A G FHDC1 Silent p.S206S 0.18 TCGA-RQ-A68N-01 4 154999 154999 A C ZNF718 RNA 0.19 TCGA-RQ-A68N-01 4 185309962 185309962 C T IRF2 Missense_Mutation p.V334I 0.26 deleterious(0) probably_damaging(0.979) TCGA-RQ-A68N-01 4 187530476 187530476 T C FAT1 Splice_Site p.X3357_splice 0.37 TCGA-RQ-A68N-01 4 187539926 187539926 A T FAT1 Missense_Mutation p.I2605N 0.25 probably_damaging(0.969) TCGA-RQ-A68N-01 4 188925193 188925193 T G ZFP42 3'UTR 0.24 TCGA-RQ-A68N-01 4 24802291 24802291 C T SOD3 3'UTR 0.28 TCGA-RQ-A68N-01 4 39460164 39460164 C T RPL9 5'UTR 0.14 TCGA-RQ-A68N-01 4 4322555 4322555 G A ZBTB49 Missense_Mutation p.E604K 0.17 tolerated(0.12) benign(0.229) TCGA-RQ-A68N-01 4 55961059 55961059 G A KDR Missense_Mutation p.R961W 0.21 deleterious(0) possibly_damaging(0.846) TCGA-RQ-A68N-01 4 72620785 72620785 T G GC Missense_Mutation p.E377D 0.33 tolerated(0.35) benign(0.212) TCGA-RQ-A68N-01 4 8307937 8307937 G A HTRA3 3'UTR 0.30 TCGA-RQ-A68N-01 4 96470113 96470113 C T UNC5C 5'UTR 0.15 TCGA-RQ-A68N-01 5 140346765 140346765 A T PCDHAC2 Silent p.I138I 0.30 TCGA-RQ-A68N-01 5 16091041 16091041 C T MARCH11 Silent p.Q281Q 0.10 TCGA-RQ-A68N-01 5 161300240 161300240 G A GABRA1 Missense_Mutation p.D125N 0.18 deleterious(0) possibly_damaging(0.854) TCGA-RQ-A68N-01 5 170235620 170235620 G A GABRP Silent p.L232L 0.14 TCGA-RQ-A68N-01 5 23523413 23523413 G T PRDM9 Missense_Mutation p.R299I 0.33 deleterious(0) benign(0.002) TCGA-RQ-A68N-01 5 40936442 40936442 C T C7 Nonsense_Mutation p.Q95* 0.27 TCGA-RQ-A68N-01 5 77711397 77711397 A C SCAMP1 Silent p.I63I 0.29 TCGA-RQ-A68N-01 5 7875473 7875473 C T MTRR Missense_Mutation p.A156V 0.31 deleterious(0) probably_damaging(1) TCGA-RQ-A68N-01 5 96073629 96073629 C T CAST Missense_Mutation p.T218M 0.27 tolerated(0.07) benign(0.408) TCGA-RQ-A68N-01 6 106553289 106553289 C G PRDM1 Nonsense_Mutation p.Y418* 0.61 TCGA-RQ-A68N-01 6 122766173 122766173 A T SERINC1 3'UTR 0.55 TCGA-RQ-A68N-01 6 122766211 122766211 A C SERINC1 Missense_Mutation p.L447R 0.56 deleterious(0) probably_damaging(0.997) TCGA-RQ-A68N-01 6 138645253 138645253 G A KIAA1244 Missense_Mutation p.E1655K 0.16 deleterious(0.01) benign(0.42) TCGA-RQ-A68N-01 6 168227904 168227904 G T MLLT4 Missense_Mutation p.S31I 0.21 deleterious(0) benign(0.004) TCGA-RQ-A68N-01 6 26156757 26156757 G C HIST1H1E Missense_Mutation p.A47P 0.12 deleterious(0) possibly_damaging(0.665) TCGA-RQ-A68N-01 6 26156929 26156929 C G HIST1H1E Missense_Mutation p.S104C 0.35 deleterious(0) probably_damaging(0.944) TCGA-RQ-A68N-01 6 26156977 26156977 C - HIST1H1E Frame_Shift_Del p.A120Vfs*109 0.11 TCGA-RQ-A68N-01 6 26217410 26217410 G A HIST1H2AE Missense_Mutation p.A70T 0.11 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-RQ-A68N-01 6 27782969 27782969 C T HIST1H2BM Missense_Mutation p.H50Y 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.487) TCGA-RQ-A68N-01 6 27799131 27799131 G A HIST1H4K Silent p.L59L 0.09 TCGA-RQ-A68N-01 6 27860529 27860529 C T HIST1H2AM 3'UTR 0.33 TCGA-RQ-A68N-01 6 27860580 27860580 C T HIST1H2AM Silent p.L116L 0.13 TCGA-RQ-A68N-01 6 29365028 29365028 G A OR12D2 Silent p.K184K 0.16 TCGA-RQ-A68N-01 6 30039324 30039324 G A RNF39 Missense_Mutation p.A276V 0.38 tolerated(0.07) possibly_damaging(0.453) TCGA-RQ-A68N-01 6 34511927 34511927 C T SPDEF Silent p.A102A 0.22 TCGA-RQ-A68N-01 6 37138267 37138267 G A PIM1 5'UTR 0.21 TCGA-RQ-A68N-01 6 37138402 37138402 C T PIM1 Silent p.C17C 0.17 TCGA-RQ-A68N-01 6 37138549 37138549 G A PIM1 Missense_Mutation p.G28D 0.08 tolerated(0.09) benign(0.374) TCGA-RQ-A68N-01 6 37138791 37138791 C T PIM1 Missense_Mutation p.S75F 0.20 tolerated(0.42) possibly_damaging(0.73) TCGA-RQ-A68N-01 6 37138953 37138953 C A PIM1 Nonsense_Mutation p.S98* 0.26 TCGA-RQ-A68N-01 6 37139097 37139097 G A PIM1 Missense_Mutation p.S146N 0.16 tolerated(0.64) benign(0.005) TCGA-RQ-A68N-01 6 37139209 37139209 G A PIM1 Silent p.K183K 0.18 TCGA-RQ-A68N-01 6 393159 393159 C G IRF4 Missense_Mutation p.L3V 0.22 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-RQ-A68N-01 6 46845956 46845956 C A GPR116 Missense_Mutation p.G408V 0.17 deleterious(0) probably_damaging(0.953) TCGA-RQ-A68N-01 6 56350230 56350230 T G DST Missense_Mutation p.Q4406H 0.20 probably_damaging(0.999) TCGA-RQ-A68N-01 6 7295651 7295651 A G SSR1 Missense_Mutation p.I256T 0.09 deleterious(0) probably_damaging(0.982) TCGA-RQ-A68N-01 6 90423000 90423000 G A MDN1 Missense_Mutation p.S2362F 0.46 possibly_damaging(0.578) TCGA-RQ-A68N-01 7 102279229 102279229 G A UPK3BL Silent p.I205I 0.21 TCGA-RQ-A68N-01 7 123672769 123672769 G A TMEM229A Missense_Mutation p.H97Y 0.73 deleterious(0) possibly_damaging(0.6) TCGA-RQ-A68N-01 7 137092719 137092719 C G DGKI Missense_Mutation p.G949A 0.56 deleterious(0.02) probably_damaging(0.998) TCGA-RQ-A68N-01 7 142881334 142881334 G A TAS2R39 Missense_Mutation p.A275T 0.68 tolerated(0.29) possibly_damaging(0.457) TCGA-RQ-A68N-01 7 2748854 2748854 C T AMZ1 Silent p.A249A 0.20 TCGA-RQ-A68N-01 7 92146905 92146905 T C PEX1 Silent p.K308K 0.63 TCGA-RQ-A68N-01 8 100829995 100829995 G A VPS13B Silent p.L2800L 0.23 TCGA-RQ-A68N-01 8 101016183 101016183 G T RGS22 Missense_Mutation p.F866L 0.12 tolerated(0.06) possibly_damaging(0.899) TCGA-RQ-A68N-01 8 118830723 118830723 C G EXT1 Missense_Mutation p.R528P 0.24 deleterious(0.02) probably_damaging(0.922) TCGA-RQ-A68N-01 8 119209904 119209904 G A SAMD12 3'UTR 0.22 TCGA-RQ-A68N-01 8 128748686 128748686 G A MYC 5'UTR 0.23 TCGA-RQ-A68N-01 8 134225357 134225357 G A WISP1 Missense_Mutation p.R107H 0.18 tolerated(0.06) benign(0.006) TCGA-RQ-A68N-01 8 13425042 13425042 T C C8orf48 Missense_Mutation p.M181T 0.26 tolerated(0.63) benign(0.022) TCGA-RQ-A68N-01 8 144994192 144994192 T C PLEC Missense_Mutation p.Q3403R 0.19 probably_damaging(0.93) TCGA-RQ-A68N-01 8 144996952 144996952 G T PLEC Missense_Mutation p.A2519D 0.14 probably_damaging(0.998) TCGA-RQ-A68N-01 8 145010055 145010055 C T PLEC Missense_Mutation p.R325K 0.18 unknown(0) TCGA-RQ-A68N-01 8 1624701 1624701 G A DLGAP2 Silent p.V655V 0.41 TCGA-RQ-A68N-01 8 24813640 24813640 G A CTD-2168K21.2 5'Flank 0.40 TCGA-RQ-A68N-01 8 41577226 41577226 C T ANK1 Missense_Mutation p.A387T 0.52 tolerated(0.25) probably_damaging(0.999) TCGA-RQ-A68N-01 8 52321593 52321593 C T PXDNL Missense_Mutation p.R864H 0.45 deleterious(0) probably_damaging(0.989) TCGA-RQ-A68N-01 8 87235201 87235201 C A SLC7A13 Missense_Mutation p.D273Y 0.17 deleterious(0.01) possibly_damaging(0.885) TCGA-RQ-A68N-01 8 87638258 87638258 C A CNGB3 Missense_Mutation p.A511S 0.18 deleterious(0) possibly_damaging(0.878) TCGA-RQ-A68N-01 9 101498863 101498863 G A ANKS6 Missense_Mutation p.H852Y 0.26 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-RQ-A68N-01 9 138011665 138011665 G A OLFM1 Missense_Mutation p.V349M 0.69 deleterious(0) probably_damaging(0.963) TCGA-RQ-A68N-01 9 138590933 138590933 C T SOHLH1 Silent p.S35S 0.72 TCGA-RQ-A68N-01 9 140158730 140158730 C T NELFB Missense_Mutation p.R273W 0.30 deleterious(0) possibly_damaging(0.806) TCGA-RQ-A68N-01 9 17135258 17135258 C A CNTLN Silent p.G65G 0.31 TCGA-RQ-A68N-01 9 73461506 73461506 T C TRPM3 Missense_Mutation p.Y155C 0.73 deleterious(0) probably_damaging(0.999) TCGA-RQ-A68N-01 9 73477848 73477848 T A TRPM3 Silent p.G146G 0.68 TCGA-RQ-A68N-01 9 77614780 77614780 A G C9orf41 Silent p.P199P 0.29 TCGA-RQ-A68N-01 9 78973531 78973531 C A PCSK5 Missense_Mutation p.A1759E 0.31 deleterious(0) possibly_damaging(0.632) TCGA-RQ-A68N-01 9 86322427 86322427 G C UBQLN1 Missense_Mutation p.S56R 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-RQ-A68N-01 X 105452498 105452498 C T MUM1L1 3'UTR 0.57 TCGA-RQ-A68N-01 X 107816878 107816878 A G COL4A5 Silent p.G180G 0.09 TCGA-RQ-A68N-01 X 12994364 12994364 G A TMSB4X 5'UTR 0.66 TCGA-RQ-A68N-01 X 136113230 136113230 C T GPR101 Missense_Mutation p.V202I 0.81 tolerated(0.97) benign(0.004) TCGA-RQ-A68N-01 X 30326889 30326889 G A NR0B1 Missense_Mutation p.R198C 0.76 deleterious(0) possibly_damaging(0.791) TCGA-RQ-A68N-01 X 37431669 37431669 G A LANCL3 Silent p.L182L 0.82 TCGA-RQ-A68N-01 X 88009293 88009293 A T CPXCR1 Missense_Mutation p.Q293L 0.29 tolerated(0.08) benign(0.005) TCGA-RQ-A6JB-01 10 12215729 12215729 C T NUDT5 Missense_Mutation p.E125K 0.33 tolerated(0.35) benign(0.244) TCGA-RQ-A6JB-01 10 31815769 31815769 C G ZEB1 Silent p.S985S 0.30 TCGA-RQ-A6JB-01 10 58120984 58120984 T C ZWINT Missense_Mutation p.E5G 0.62 tolerated_low_confidence(0.22) unknown(0) TCGA-RQ-A6JB-01 10 96802724 96802724 A G CYP2C8 Missense_Mutation p.Y358H 0.36 deleterious(0.01) possibly_damaging(0.56) TCGA-RQ-A6JB-01 11 116707093 116707093 A G APOA1 Missense_Mutation p.S79P 0.38 deleterious(0.03) benign(0.049) TCGA-RQ-A6JB-01 11 132016345 132016345 T A NTM Missense_Mutation p.Y113N 0.36 deleterious(0) probably_damaging(1) TCGA-RQ-A6JB-01 11 13513862 13513862 T C PTH 3'UTR 0.20 TCGA-RQ-A6JB-01 11 1780809 1780809 C T CTSD Missense_Mutation p.D97N 0.30 deleterious(0) probably_damaging(0.999) TCGA-RQ-A6JB-01 11 67763109 67763109 T A UNC93B1 Missense_Mutation p.S445C 0.30 deleterious(0) probably_damaging(0.987) TCGA-RQ-A6JB-01 12 108170162 108170162 C T ASCL4 3'UTR 0.47 TCGA-RQ-A6JB-01 12 110902947 110902947 G A GPN3 Missense_Mutation p.P80S 0.42 deleterious(0) possibly_damaging(0.74) TCGA-RQ-A6JB-01 12 1993483 1993483 C T CACNA2D4 Missense_Mutation p.R426Q 0.35 deleterious(0) probably_damaging(0.948) TCGA-RQ-A6JB-01 12 49935410 49935410 C T KCNH3 Intron 0.32 TCGA-RQ-A6JB-01 12 58140844 58140844 A C TSPAN31 Missense_Mutation p.K163T 0.39 tolerated(0.57) benign(0.016) TCGA-RQ-A6JB-01 12 6471387 6471387 G A SCNN1A Silent p.D294D 0.26 TCGA-RQ-A6JB-01 12 86198771 86198771 G A RASSF9 Silent p.I339I 0.39 TCGA-RQ-A6JB-01 13 31037760 31037761 - AAA HMGB1 In_Frame_Ins p.F19dup 0.38 TCGA-RQ-A6JB-01 13 33684064 33684064 T A STARD13 Missense_Mutation p.Q998L 0.39 deleterious(0.05) benign(0.178) TCGA-RQ-A6JB-01 14 106370566 106370566 A G IGHD3-9 Silent p.L2L 0.41 TCGA-RQ-A6JB-01 14 107178846 107178846 T C IGHV2-70 Missense_Mutation p.T111A 0.17 deleterious(0.01) possibly_damaging(0.661) TCGA-RQ-A6JB-01 14 107178859 107178859 C G IGHV2-70 Missense_Mutation p.M106I 0.19 deleterious(0.01) benign(0.193) TCGA-RQ-A6JB-01 14 107179007 107179007 C A IGHV2-70 Missense_Mutation p.W57L 0.21 deleterious(0.01) possibly_damaging(0.834) TCGA-RQ-A6JB-01 14 107179045 107179045 A T IGHV2-70 Silent p.S44S 0.23 TCGA-RQ-A6JB-01 14 107179053 107179053 T C IGHV2-70 Missense_Mutation p.T42A 0.22 tolerated(0.43) benign(0.441) TCGA-RQ-A6JB-01 14 107179062 107179062 G A IGHV2-70 Silent p.L39L 0.20 TCGA-RQ-A6JB-01 14 107179093 107179093 A C IGHV2-70 Silent p.P28P 0.22 TCGA-RQ-A6JB-01 14 107179104 107179104 C T IGHV2-70 Missense_Mutation p.E25K 0.29 deleterious(0.02) probably_damaging(1) TCGA-RQ-A6JB-01 14 21167775 21167775 G A RNASE4 Missense_Mutation p.R82H 0.24 tolerated(0.13) benign(0.004) TCGA-RQ-A6JB-01 14 24775219 24775219 G A CIDEB Missense_Mutation p.A154V 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-RQ-A6JB-01 15 102516417 102516417 C T WASH3P 3'Flank 0.05 TCGA-RQ-A6JB-01 15 43892745 43892745 A C STRC Missense_Mutation p.I1660M 0.36 deleterious(0) possibly_damaging(0.724) TCGA-RQ-A6JB-01 15 43893080 43893080 A G STRC Missense_Mutation p.W1612R 0.33 tolerated(0.53) benign(0.045) TCGA-RQ-A6JB-01 15 43893117 43893117 A C STRC Missense_Mutation p.C1599W 0.36 deleterious(0) probably_damaging(0.999) TCGA-RQ-A6JB-01 15 45007714 45007714 A T B2M Missense_Mutation p.D54V 0.51 tolerated(0.05) benign(0.302) TCGA-RQ-A6JB-01 15 45007788 45007788 G T B2M Missense_Mutation p.D79Y 0.57 deleterious(0) probably_damaging(0.999) TCGA-RQ-A6JB-01 15 45007809 45007809 T G B2M Missense_Mutation p.Y86D 0.58 deleterious(0.01) possibly_damaging(0.708) TCGA-RQ-A6JB-01 15 65347441 65347441 G A RASL12 Silent p.S199S 0.32 TCGA-RQ-A6JB-01 15 79749361 79749361 G A KIAA1024 Missense_Mutation p.R291Q 0.37 tolerated(0.29) benign(0.003) TCGA-RQ-A6JB-01 16 67645325 67645325 A G CTCF Missense_Mutation p.Y197C 0.39 deleterious(0.03) possibly_damaging(0.594) TCGA-RQ-A6JB-01 16 70989411 70989411 G A HYDIN Silent p.N2061N 0.29 TCGA-RQ-A6JB-01 16 85936784 85936784 T G IRF8 Missense_Mutation p.S55A 0.78 tolerated(0.61) benign(0.386) TCGA-RQ-A6JB-01 17 40475061 40475063 CTT - STAT3 In_Frame_Del p.E616del 0.33 TCGA-RQ-A6JB-01 17 7416355 7416355 C T POLR2A Missense_Mutation p.P1591L 0.33 benign(0.142) TCGA-RQ-A6JB-01 17 76567366 76567366 G A DNAH17 Missense_Mutation p.T276I 0.40 benign(0.014) TCGA-RQ-A6JB-01 17 79633567 79633567 G A OXLD1 Missense_Mutation p.A14V 0.35 tolerated(0.37) unknown(0) TCGA-RQ-A6JB-01 18 25583075 25583075 C T CDH2 Silent p.G302G 0.38 TCGA-RQ-A6JB-01 18 40857297 40857297 G A SYT4 5'UTR 0.28 TCGA-RQ-A6JB-01 19 10334795 10334795 A G S1PR2 Missense_Mutation p.S263P 0.33 tolerated(0.16) benign(0.008) TCGA-RQ-A6JB-01 19 10334796 10334796 G T S1PR2 Missense_Mutation p.H262Q 0.33 tolerated(0.38) benign(0) TCGA-RQ-A6JB-01 19 10475643 10475643 G T TYK2 Missense_Mutation p.P365T 0.07 tolerated(0.32) benign(0.072) TCGA-RQ-A6JB-01 19 12577645 12577645 T C ZNF709 Missense_Mutation p.D8G 0.21 deleterious(0) possibly_damaging(0.629) TCGA-RQ-A6JB-01 19 17212850 17212850 T C MYO9B Missense_Mutation p.L108P 0.35 deleterious(0) probably_damaging(0.974) TCGA-RQ-A6JB-01 19 3751204 3751204 T G APBA3 Missense_Mutation p.T547P 0.31 deleterious(0) probably_damaging(0.985) TCGA-RQ-A6JB-01 19 57327786 57327786 C G PEG3 Missense_Mutation p.R675P 0.04 deleterious(0.01) probably_damaging(0.933) TCGA-RQ-A6JB-01 19 57889497 57889497 A G ZNF547 Missense_Mutation p.K385E 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-RQ-A6JB-01 19 57889498 57889498 A C ZNF547 Missense_Mutation p.K385T 0.23 deleterious(0) probably_damaging(1) TCGA-RQ-A6JB-01 19 57889597 57889597 A G ZNF547 3'UTR 0.31 TCGA-RQ-A6JB-01 19 57889666 57889666 A T ZNF547 3'UTR 0.27 TCGA-RQ-A6JB-01 19 7620541 7620541 C T PNPLA6 Silent p.V1005V 0.43 TCGA-RQ-A6JB-01 1 161187859 161187859 C A FCER1G Silent p.R45R 0.33 TCGA-RQ-A6JB-01 1 175049323 175049323 T C TNN Missense_Mutation p.L270P 0.29 deleterious(0.01) benign(0.33) TCGA-RQ-A6JB-01 1 216251568 216251568 A C USH2A Missense_Mutation p.I1812R 0.35 possibly_damaging(0.857) TCGA-RQ-A6JB-01 1 240370997 240370997 C A FMN2 Missense_Mutation p.A962E 0.73 unknown(0) TCGA-RQ-A6JB-01 1 32800454 32800454 T A MARCKSL1 Missense_Mutation p.E111V 0.27 deleterious(0) probably_damaging(0.937) TCGA-RQ-A6JB-01 1 33956948 33956948 C T ZSCAN20 Silent p.L364L 0.39 TCGA-RQ-A6JB-01 1 36068830 36068830 A T PSMB2 3'UTR 0.34 TCGA-RQ-A6JB-01 1 45267295 45267295 C T PLK3 Missense_Mutation p.S146F 0.31 deleterious(0) probably_damaging(0.999) TCGA-RQ-A6JB-01 1 46509267 46509267 G A PIK3R3 3'UTR 0.42 TCGA-RQ-A6JB-01 20 34293162 34293162 G C RBM39 Missense_Mutation p.D466E 0.26 deleterious(0) probably_damaging(0.921) TCGA-RQ-A6JB-01 20 50408196 50408196 T G SALL4 Missense_Mutation p.S276R 0.27 deleterious(0.02) possibly_damaging(0.535) TCGA-RQ-A6JB-01 21 10973770 10973770 G T TPTE 5'UTR 0.12 TCGA-RQ-A6JB-01 21 30339371 30339371 T C LTN1 Missense_Mutation p.H527R 0.38 tolerated(0.65) benign(0.001) TCGA-RQ-A6JB-01 21 30365143 30365143 G A LTN1 Missense_Mutation p.T41I 0.32 tolerated_low_confidence(0.24) benign(0) TCGA-RQ-A6JB-01 21 45846945 45846945 G T TRPM2 Missense_Mutation p.D1309Y 0.05 deleterious(0) probably_damaging(0.928) TCGA-RQ-A6JB-01 22 23223346 23223346 T C IGLV3-1 Missense_Mutation p.I39T 0.28 deleterious(0.01) possibly_damaging(0.64) TCGA-RQ-A6JB-01 22 23223363 23223363 A T IGLV3-1 Nonsense_Mutation p.K45* 0.43 TCGA-RQ-A6JB-01 22 23223373 23223373 A G IGLV3-1 Missense_Mutation p.D48G 0.33 tolerated(0.27) benign(0.002) TCGA-RQ-A6JB-01 22 23230183 23230183 G A IGLL5 5'UTR 0.34 TCGA-RQ-A6JB-01 22 23230184 23230184 G T IGLL5 5'UTR 0.34 TCGA-RQ-A6JB-01 22 37098689 37098689 A C CACNG2 5'UTR 0.35 TCGA-RQ-A6JB-01 2 120438454 120438454 G A TMEM177 Missense_Mutation p.A9T 0.37 tolerated(0.44) benign(0.009) TCGA-RQ-A6JB-01 2 17876441 17876449 CATGACTAG - SMC6 In_Frame_Del p.A883_H885del 0.15 TCGA-RQ-A6JB-01 2 187533626 187533626 G A ITGAV Silent p.E857E 0.35 TCGA-RQ-A6JB-01 2 233546429 233546429 G T EFHD1 Nonstop_Mutation p.*240Yext*3 0.26 TCGA-RQ-A6JB-01 2 3341911 3341911 T C TSSC1 Missense_Mutation p.I46V 0.60 tolerated(0.54) benign(0.14) TCGA-RQ-A6JB-01 2 89326715 89326715 G C IGKV3-11 Missense_Mutation p.P100A 0.09 tolerated(1) benign(0.027) TCGA-RQ-A6JB-01 2 89326772 89326772 T G IGKV3-11 Silent p.R81R 0.19 TCGA-RQ-A6JB-01 2 89326852 89326868 GCTAAGTAGCTGCTAAC ACTAAGGAGGTGCTCAT IGKV3-11 Missense_Mutation p.VSSYLA49MSTSLV 0.08 TCGA-RQ-A6JB-01 2 90212163 90212163 T C IGKV3D-11 Silent p.S85S 0.38 TCGA-RQ-A6JB-01 3 124175525 124175525 C T KALRN Silent p.D1266D 0.30 TCGA-RQ-A6JB-01 3 129156137 129156137 T C MBD4 Missense_Mutation p.K117R 0.44 deleterious(0.02) probably_damaging(1) TCGA-RQ-A6JB-01 3 15288244 15288244 T A CAPN7 Nonsense_Mutation p.Y672* 0.37 TCGA-RQ-A6JB-01 3 164777807 164777807 T A SI Silent p.G343G 0.42 TCGA-RQ-A6JB-01 3 170800056 170800056 G A TNIK Silent p.V1099V 0.17 TCGA-RQ-A6JB-01 3 38181908 38181908 A G MYD88 Missense_Mutation p.I178V 0.69 tolerated(0.57) benign(0.024) TCGA-RQ-A6JB-01 3 39230658 39230658 G A XIRP1 Silent p.C93C 0.08 TCGA-RQ-A6JB-01 3 51497147 51497147 C T VPRBP Missense_Mutation p.V120I 0.38 tolerated(0.19) benign(0.106) TCGA-RQ-A6JB-01 3 99509579 99509579 C T COL8A1 Missense_Mutation p.S18F 0.34 tolerated_low_confidence(0.7) unknown(0) TCGA-RQ-A6JB-01 4 103806567 103806567 A T CISD2 Missense_Mutation p.R100W 0.36 deleterious(0) probably_damaging(1) TCGA-RQ-A6JB-01 4 185941741 185941741 G A HELT Missense_Mutation p.A267T 0.55 tolerated(0.36) benign(0.005) TCGA-RQ-A6JB-01 4 94751127 94751127 G A ATOH1 Silent p.S350S 0.28 TCGA-RQ-A6JB-01 4 96761963 96761963 A G PDHA2 Missense_Mutation p.E221G 0.40 deleterious(0) probably_damaging(0.996) TCGA-RQ-A6JB-01 5 133561476 133561476 G A PPP2CA Missense_Mutation p.S26F 0.45 tolerated(0.05) benign(0.035) TCGA-RQ-A6JB-01 5 140615768 140615768 C T PCDHB18 RNA 0.07 TCGA-RQ-A6JB-01 5 19483601 19483601 T G CDH18 Missense_Mutation p.Y564S 0.36 deleterious(0) probably_damaging(0.999) TCGA-RQ-A6JB-01 5 37224369 37224369 T C C5orf42 Missense_Mutation p.E856G 0.31 deleterious(0) possibly_damaging(0.702) TCGA-RQ-A6JB-01 5 94764428 94764428 G A FAM81B Missense_Mutation p.D260N 0.35 deleterious(0) probably_damaging(0.969) TCGA-RQ-A6JB-01 6 29407999 29407999 G C OR10C1 Missense_Mutation p.E69D 0.37 tolerated(0.15) benign(0.003) TCGA-RQ-A6JB-01 6 29910609 29910609 G T HLA-A Missense_Mutation p.G50V 0.56 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-RQ-A6JB-01 6 46665826 46665826 T C TDRD6 Splice_Site p.X2087_splice 0.38 TCGA-RQ-A6JB-01 6 49704124 49704124 C A CRISP3 Missense_Mutation p.A80S 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-RQ-A6JB-01 6 96035056 96035056 T G MANEA Intron 0.36 TCGA-RQ-A6JB-01 6 96658288 96658288 C A FUT9 3'UTR 0.31 TCGA-RQ-A6JB-01 7 129028933 129028933 C T AHCYL2 Missense_Mutation p.S171L 0.42 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-RQ-A6JB-01 7 5568972 5568972 C G ACTB Missense_Mutation p.K61N 0.35 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-RQ-A6JB-01 7 64670158 64670158 A - INTS4L1 RNA 0.21 TCGA-RQ-A6JB-01 7 87765308 87765308 C T ADAM22 Silent p.C394C 0.26 TCGA-RQ-A6JB-01 8 123966206 123966206 T C ZHX2 Missense_Mutation p.V819A 0.52 tolerated_low_confidence(0.93) benign(0) TCGA-RQ-A6JB-01 8 145535782 145535782 G T HSF1 Missense_Mutation p.D332Y 0.29 deleterious(0.01) possibly_damaging(0.781) TCGA-RQ-A6JB-01 8 145675835 145675835 G C CYHR1 Missense_Mutation p.S339C 0.48 deleterious(0.01) possibly_damaging(0.897) TCGA-RQ-A6JB-01 8 23429084 23429084 G A SLC25A37 Missense_Mutation p.G245R 0.41 deleterious(0) probably_damaging(1) TCGA-RQ-A6JB-01 8 27382956 27382956 C T EPHX2 Missense_Mutation p.P379L 0.35 deleterious(0) benign(0.008) TCGA-RQ-A6JB-01 8 48614293 48614293 A C SPIDR Missense_Mutation p.H595P 0.36 tolerated(0.2) benign(0.003) TCGA-RQ-A6JB-01 8 48855872 48855872 T C PRKDC Missense_Mutation p.D288G 0.28 probably_damaging(0.92) TCGA-RQ-A6JB-01 8 56879434 56879434 C A LYN Silent p.I317I 0.35 TCGA-RQ-A6JB-01 8 57026520 57026520 G A MOS Missense_Mutation p.R8C 0.29 tolerated(0.15) benign(0.002) TCGA-RQ-A6JB-01 8 73993379 73993379 C T SBSPON Missense_Mutation p.R95H 0.33 deleterious(0) probably_damaging(0.95) TCGA-RQ-A6JB-01 9 103348299 103348299 A T MURC Missense_Mutation p.I221F 0.33 tolerated(0.07) possibly_damaging(0.597) TCGA-RQ-A6JB-01 9 112225710 112225710 G C PTPN3 Missense_Mutation p.T2S 0.35 tolerated(0.29) benign(0.196) TCGA-RQ-A6JB-01 9 123367753 123367753 T C MEGF9 Silent p.V508V 0.38 TCGA-RQ-A6JB-01 9 136913428 136913428 G A BRD3 Missense_Mutation p.P288L 0.29 tolerated(0.44) probably_damaging(0.981) TCGA-RQ-A6JB-01 X 100609652 100609652 C G BTK Missense_Mutation p.G533R 0.39 tolerated(0.55) probably_damaging(0.999) TCGA-RQ-A6JB-01 X 122830596 122830596 A C THOC2 Missense_Mutation p.S148A 0.37 deleterious(0.02) benign(0.039) TCGA-RQ-A6JB-01 X 140995449 140995449 G A MAGEC1 Silent p.L753L 0.33 TCGA-RQ-A6JB-01 X 18671625 18671625 C G CDKL5 Silent p.L1018L 0.27 TCGA-RQ-A6JB-01 X 48457775 48457775 G A WDR13 Missense_Mutation p.R106H 0.46 deleterious(0.02) possibly_damaging(0.62) TCGA-RQ-A6JB-01 X 57515299 57515299 G T FAAH2 Silent p.L511L 0.27 TCGA-RQ-A6JB-01 X 57934692 57934692 T G ZXDA Silent p.T721T 0.31 TCGA-RQ-A6JB-01 X 68058620 68058620 G A EFNB1 Missense_Mutation p.V97M 0.26 tolerated(0.06) probably_damaging(1) TCGA-RQ-A6JB-01 X 69478576 69478576 C T P2RY4 Missense_Mutation p.C300Y 0.31 deleterious(0.04) possibly_damaging(0.698) TCGA-RQ-A6JB-01 X 79277888 79277888 C T TBX22 Silent p.G40G 0.30 TCGA-RQ-A6JB-01 X 83588808 83588808 T A HDX Missense_Mutation p.N595Y 0.29 tolerated(0.05) probably_damaging(0.996) TCGA-RQ-A6JB-01 X 85403679 85403679 C T DACH2 Missense_Mutation p.P19S 0.33 tolerated_low_confidence(0.25) benign(0.002) TCGA-RQ-A6JB-01 X 9733847 9733847 G T GPR143 Missense_Mutation p.P4Q 0.17 deleterious(0) probably_damaging(1) TCGA-RQ-AAAT-01 10 102762635 102762635 C T LZTS2 Missense_Mutation p.R114W 0.16 deleterious(0.01) possibly_damaging(0.618) TCGA-RQ-AAAT-01 10 124184426 124184426 G C PLEKHA1 Missense_Mutation p.R254T 0.43 deleterious(0) possibly_damaging(0.572) TCGA-RQ-AAAT-01 10 15255613 15255613 A G FAM171A1 Silent p.P658P 0.16 TCGA-RQ-AAAT-01 10 87614258 87614258 G A GRID1 Missense_Mutation p.R410C 0.41 deleterious(0) possibly_damaging(0.724) TCGA-RQ-AAAT-01 11 103091487 103091487 G A DYNC2H1 Missense_Mutation p.D3028N 0.54 probably_damaging(0.994) TCGA-RQ-AAAT-01 11 119031694 119031694 C T ABCG4 Nonsense_Mutation p.R607* 0.25 TCGA-RQ-AAAT-01 11 126081386 126081386 G A RPUSD4 Missense_Mutation p.L50F 0.47 tolerated(0.05) benign(0.071) TCGA-RQ-AAAT-01 11 126134971 126134971 G A SRPR Missense_Mutation p.R470W 0.23 deleterious(0) probably_damaging(0.995) TCGA-RQ-AAAT-01 11 126299147 126299147 C T KIRREL3 Missense_Mutation p.R578Q 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-RQ-AAAT-01 11 4825232 4825232 C T OR52R1 Missense_Mutation p.V127M 0.35 deleterious(0.01) probably_damaging(0.975) TCGA-RQ-AAAT-01 11 5475352 5475352 T C OR51I2 Missense_Mutation p.F212L 0.15 tolerated(1) benign(0.003) TCGA-RQ-AAAT-01 11 55927085 55927085 C G OR8K5 Missense_Mutation p.A237P 0.12 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-RQ-AAAT-01 11 70505972 70505972 C T SHANK2 Silent p.A675A 0.59 TCGA-RQ-AAAT-01 11 82444591 82444591 C T FAM181B Missense_Mutation p.E61K 0.64 deleterious(0) possibly_damaging(0.81) TCGA-RQ-AAAT-01 11 83770527 83770527 C T DLG2 Silent p.R250R 0.23 TCGA-RQ-AAAT-01 11 88070757 88070757 G A CTSC Silent p.A28A 0.12 TCGA-RQ-AAAT-01 11 9459505 9459505 G A IPO7 Missense_Mutation p.V825I 0.10 tolerated(0.17) benign(0.005) TCGA-RQ-AAAT-01 12 113496024 113496024 G C DTX1 Silent p.L9L 0.37 TCGA-RQ-AAAT-01 12 113496139 113496139 A T DTX1 Missense_Mutation p.I48F 0.32 deleterious(0) benign(0.08) TCGA-RQ-AAAT-01 12 113496201 113496201 G A DTX1 Silent p.Q68Q 0.33 TCGA-RQ-AAAT-01 12 113559400 113559401 - G RASAL1 Frame_Shift_Ins p.E115Rfs*5 0.16 TCGA-RQ-AAAT-01 12 122459911 122459911 C T BCL7A 5'UTR 0.41 TCGA-RQ-AAAT-01 12 124163749 124163749 C T TCTN2 Silent p.V159V 0.34 TCGA-RQ-AAAT-01 12 132426407 132426407 A G PUS1 Missense_Mutation p.H372R 0.39 deleterious(0.02) benign(0.04) TCGA-RQ-AAAT-01 12 18891082 18891082 A C CAPZA3 5'UTR 0.35 TCGA-RQ-AAAT-01 12 57994658 57994658 G T PIP4K2C Missense_Mutation p.G293V 0.09 deleterious(0.01) possibly_damaging(0.562) TCGA-RQ-AAAT-01 12 6457289 6457289 C T SCNN1A Missense_Mutation p.R646K 0.46 tolerated(0.09) benign(0.303) TCGA-RQ-AAAT-01 12 7172542 7172542 G A C1S Missense_Mutation p.R219Q 0.15 tolerated(0.9) benign(0.043) TCGA-RQ-AAAT-01 12 75710108 75710108 G T CAPS2 Missense_Mutation p.A211E 0.42 tolerated(0.13) benign(0.065) TCGA-RQ-AAAT-01 12 78400358 78400358 T A NAV3 Missense_Mutation p.M347K 0.18 deleterious(0) probably_damaging(0.988) TCGA-RQ-AAAT-01 12 85459141 85459141 T G LRRIQ1 Silent p.T831T 0.30 TCGA-RQ-AAAT-01 12 92539203 92539203 G A BTG1 Silent p.L37L 0.45 TCGA-RQ-AAAT-01 13 113536441 113536441 A G ATP11A 3'UTR 0.78 TCGA-RQ-AAAT-01 13 23913163 23913163 A G SACS Missense_Mutation p.F1618L 0.35 probably_damaging(0.977) TCGA-RQ-AAAT-01 13 84454425 84454425 C A SLITRK1 Silent p.L406L 0.30 TCGA-RQ-AAAT-01 14 103802182 103802182 C T EIF5 5'UTR 0.19 TCGA-RQ-AAAT-01 14 106207927 106207927 C G IGHG1 Missense_Mutation p.K292N 0.26 deleterious(0) probably_damaging(0.999) TCGA-RQ-AAAT-01 14 106207931 106207931 C T IGHG1 Missense_Mutation p.S291N 0.25 deleterious(0.01) possibly_damaging(0.484) TCGA-RQ-AAAT-01 14 106208011 106208011 C T IGHG1 Nonsense_Mutation p.W264* 0.33 TCGA-RQ-AAAT-01 14 106208047 106208047 G C IGHG1 Silent p.V252V 0.36 TCGA-RQ-AAAT-01 14 106208118 106208118 G A IGHG1 Missense_Mutation p.P229S 0.20 deleterious(0) probably_damaging(0.989) TCGA-RQ-AAAT-01 14 106208229 106208229 C T IGHG1 Splice_Site p.X224_splice 0.15 TCGA-RQ-AAAT-01 14 106209184 106209184 G A IGHG1 Silent p.S75S 0.38 TCGA-RQ-AAAT-01 14 106237474 106237474 G C IGHG3 Missense_Mutation p.S90R 0.63 deleterious(0) probably_damaging(0.985) TCGA-RQ-AAAT-01 14 106237519 106237519 G A IGHG3 Silent p.S75S 0.60 TCGA-RQ-AAAT-01 14 106321910 106321910 C T IGHM Silent p.E108E 0.60 TCGA-RQ-AAAT-01 14 106322024 106322024 G C IGHM Missense_Mutation p.N100K 0.49 tolerated(0.83) benign(0.003) TCGA-RQ-AAAT-01 14 106322166 106322166 G A IGHM Missense_Mutation p.T53I 0.45 tolerated(1) benign(0) TCGA-RQ-AAAT-01 14 106322168 106322168 G A IGHM Silent p.S52S 0.44 TCGA-RQ-AAAT-01 14 106322263 106322263 T A IGHM Missense_Mutation p.T21S 0.43 tolerated(0.39) benign(0.003) TCGA-RQ-AAAT-01 14 106829641 106829641 G T IGHV4-34 Missense_Mutation p.L108M 0.41 deleterious(0.02) possibly_damaging(0.709) TCGA-RQ-AAAT-01 14 106829655 106829655 T A IGHV4-34 Missense_Mutation p.Q103L 0.65 deleterious(0.01) benign(0.045) TCGA-RQ-AAAT-01 14 106829686 106829686 C T IGHV4-34 Missense_Mutation p.V93I 0.65 tolerated(0.82) benign(0.007) TCGA-RQ-AAAT-01 14 106829744 106829744 C T IGHV4-34 Nonsense_Mutation p.W73* 0.50 TCGA-RQ-AAAT-01 14 106829869 106829869 G A IGHV4-34 Nonsense_Mutation p.Q32* 0.74 TCGA-RQ-AAAT-01 14 106829875 106829875 G A IGHV4-34 Silent p.L30L 0.26 TCGA-RQ-AAAT-01 14 107170140 107170140 A G IGHV1-69 Missense_Mutation p.F48L 0.52 tolerated(0.05) benign(0.214) TCGA-RQ-AAAT-01 14 107170147 107170147 T C IGHV1-69 Silent p.G45G 0.53 TCGA-RQ-AAAT-01 14 107179062 107179062 G A IGHV2-70 Silent p.L39L 0.52 TCGA-RQ-AAAT-01 14 107179132 107179132 T G IGHV2-70 Splice_Site p.X16_splice 0.15 TCGA-RQ-AAAT-01 14 107199069 107199069 C G IGHV3-72 Missense_Mutation p.A74P 0.24 tolerated_low_confidence(0.17) possibly_damaging(0.547) TCGA-RQ-AAAT-01 14 107199149 107199149 G A IGHV3-72 Missense_Mutation p.T47I 0.31 deleterious_low_confidence(0) benign(0.118) TCGA-RQ-AAAT-01 14 74874205 74874205 G T SYNDIG1L 3'UTR 0.17 TCGA-RQ-AAAT-01 14 86093359 86093359 G A FLRT2 3'UTR 0.36 TCGA-RQ-AAAT-01 15 23813000 23813000 C T MKRN3 3'UTR 0.89 TCGA-RQ-AAAT-01 15 50902055 50902055 G T TRPM7 Missense_Mutation p.T795K 0.18 tolerated(0.31) benign(0.097) TCGA-RQ-AAAT-01 15 62256044 62256044 G C VPS13C Missense_Mutation p.I1107M 0.86 deleterious(0.01) possibly_damaging(0.764) TCGA-RQ-AAAT-01 15 84868557 84868557 C T AC136698.1 3'Flank 0.39 TCGA-RQ-AAAT-01 16 1255246 1255246 G A CACNA1H Missense_Mutation p.G862S 0.44 tolerated(0.34) possibly_damaging(0.69) TCGA-RQ-AAAT-01 16 2287821 2287821 G A DNASE1L2 Silent p.Q215Q 0.41 TCGA-RQ-AAAT-01 16 31230671 31230671 T C TRIM72 Missense_Mutation p.L183P 0.17 deleterious(0) probably_damaging(0.99) TCGA-RQ-AAAT-01 16 71674992 71674992 A C MARVELD3 3'UTR 0.24 TCGA-RQ-AAAT-01 16 77401400 77401400 C T ADAMTS18 Missense_Mutation p.R239Q 0.50 tolerated(1) benign(0.001) TCGA-RQ-AAAT-01 16 89628041 89628041 G A RPL13 Missense_Mutation p.R101K 0.19 deleterious(0) probably_damaging(0.966) TCGA-RQ-AAAT-01 17 39296201 39296201 C T KRTAP4-6 Missense_Mutation p.C180Y 0.41 deleterious(0.01) unknown(0) TCGA-RQ-AAAT-01 17 40475063 40475063 T C STAT3 Missense_Mutation p.E616G 0.33 deleterious(0) possibly_damaging(0.755) TCGA-RQ-AAAT-01 17 45369814 45369814 C T ITGB3 Missense_Mutation p.R524W 0.38 deleterious(0) probably_damaging(0.998) TCGA-RQ-AAAT-01 17 48631644 48631644 G A SPATA20 Missense_Mutation p.V664M 0.50 deleterious(0) probably_damaging(0.996) TCGA-RQ-AAAT-01 17 62006798 62006798 T A CD79B Missense_Mutation p.Y197F 0.79 deleterious(0) probably_damaging(0.999) TCGA-RQ-AAAT-01 17 64125942 64125942 C A CEP112 Splice_Site p.X189_splice 0.48 TCGA-RQ-AAAT-01 17 67310729 67310729 C A ABCA5 Intron 0.23 TCGA-RQ-AAAT-01 17 71434182 71434182 G A SDK2 Silent p.A279A 0.42 TCGA-RQ-AAAT-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.68 deleterious(0) probably_damaging(1) TCGA-RQ-AAAT-01 17 76481646 76481646 G A DNAH17 Missense_Mutation p.S2476L 0.17 probably_damaging(0.972) TCGA-RQ-AAAT-01 17 8053822 8053822 C T PER1 Missense_Mutation p.R68Q 0.57 tolerated(0.3) probably_damaging(0.974) TCGA-RQ-AAAT-01 18 77156301 77156301 C G NFATC1 5'Flank 0.22 TCGA-RQ-AAAT-01 19 12984673 12984673 C A MAST1 Missense_Mutation p.S1234R 0.42 deleterious(0.04) benign(0.383) TCGA-RQ-AAAT-01 19 14167553 14167553 C A PALM3 Missense_Mutation p.D64Y 0.37 deleterious(0) probably_damaging(0.971) TCGA-RQ-AAAT-01 19 14512523 14512523 C T CD97 Silent p.S378S 0.38 TCGA-RQ-AAAT-01 19 15073065 15073065 G T SLC1A6 Missense_Mutation p.F228L 0.42 tolerated(0.68) benign(0.005) TCGA-RQ-AAAT-01 19 17838807 17838807 C T MAP1S Missense_Mutation p.R872C 0.29 deleterious(0.04) possibly_damaging(0.459) TCGA-RQ-AAAT-01 19 19651184 19651184 G A CILP2 Missense_Mutation p.R112H 0.42 tolerated(0.28) probably_damaging(0.947) TCGA-RQ-AAAT-01 19 23405491 23405491 G A ZNF724P Missense_Mutation p.S519L 0.30 deleterious(0.02) probably_damaging(0.945) TCGA-RQ-AAAT-01 19 37967358 37967358 A G ZNF570 Intron 0.35 TCGA-RQ-AAAT-01 19 40095831 40095831 C A LGALS13 Missense_Mutation p.L36M 0.23 tolerated(0.2) probably_damaging(0.953) TCGA-RQ-AAAT-01 19 41075558 41075593 CCCAGGAAGGCCACCCTGGCTGACATTGTGGAACAG - SPTBN4 Splice_Site p.X2319_splice 0.14 TCGA-RQ-AAAT-01 19 41282895 41282895 G C MIA Missense_Mutation p.D95H 0.12 deleterious(0.01) probably_damaging(0.923) TCGA-RQ-AAAT-01 19 45412255 45412255 G A APOE Silent p.A234A 0.33 TCGA-RQ-AAAT-01 19 47524917 47524917 G C NPAS1 Silent p.R57R 0.11 TCGA-RQ-AAAT-01 19 50366955 50366955 C T PNKP Silent p.L269L 0.17 TCGA-RQ-AAAT-01 19 5455866 5455866 G A ZNRF4 Missense_Mutation p.V122I 0.24 tolerated(0.26) benign(0.022) TCGA-RQ-AAAT-01 19 55869916 55869916 C T FAM71E2 Missense_Mutation p.E774K 0.07 tolerated(0.61) unknown(0) TCGA-RQ-AAAT-01 19 58320162 58320162 G A ZNF552 Missense_Mutation p.A157V 0.23 tolerated(1) benign(0.001) TCGA-RQ-AAAT-01 19 695461 695461 G A PRSS57 5'Flank 0.47 TCGA-RQ-AAAT-01 19 7593558 7593558 G A MCOLN1 Missense_Mutation p.R318H 0.42 deleterious(0.02) benign(0.429) TCGA-RQ-AAAT-01 1 116206843 116206843 C T VANGL1 Missense_Mutation p.R256C 0.36 deleterious(0) probably_damaging(1) TCGA-RQ-AAAT-01 1 149857872 149857872 G C HIST2H2BE Missense_Mutation p.L107V 0.45 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-RQ-AAAT-01 1 151318690 151318690 C T RFX5 Missense_Mutation p.G36D 0.19 deleterious(0.02) possibly_damaging(0.682) TCGA-RQ-AAAT-01 1 151508789 151508789 G A CGN Missense_Mutation p.E1092K 0.20 deleterious(0) probably_damaging(0.999) TCGA-RQ-AAAT-01 1 152128973 152128973 C A RPTN Missense_Mutation p.S201I 0.46 deleterious(0.02) benign(0.01) TCGA-RQ-AAAT-01 1 155220451 155220451 G A FAM189B Missense_Mutation p.L376F 0.49 tolerated(0.06) probably_damaging(0.986) TCGA-RQ-AAAT-01 1 156182902 156182902 T C PMF1 Silent p.I32I 0.44 TCGA-RQ-AAAT-01 1 158735736 158735736 G A OR6N1 Missense_Mutation p.T246I 0.35 tolerated(0.35) benign(0.034) TCGA-RQ-AAAT-01 1 162722894 162722894 G A DDR2 Missense_Mutation p.R31H 0.40 deleterious(0) probably_damaging(0.998) TCGA-RQ-AAAT-01 1 168281980 168281980 G T TBX19 Missense_Mutation p.A363S 0.07 tolerated(0.59) benign(0.006) TCGA-RQ-AAAT-01 1 186007087 186007087 C G HMCN1 Missense_Mutation p.A1924G 0.18 benign(0.174) TCGA-RQ-AAAT-01 1 203274827 203274827 C G BTG2 Missense_Mutation p.S31R 0.20 tolerated(0.08) benign(0.058) TCGA-RQ-AAAT-01 1 203274831 203274831 C A BTG2 Missense_Mutation p.Q33K 0.62 tolerated(0.52) benign(0.004) TCGA-RQ-AAAT-01 1 203274867 203274867 G C BTG2 Missense_Mutation p.A45P 0.26 tolerated(0.13) possibly_damaging(0.602) TCGA-RQ-AAAT-01 1 20964541 20964541 C T PINK1 Silent p.T198T 0.55 TCGA-RQ-AAAT-01 1 226924856 226924859 AACT - ITPKB Frame_Shift_Del p.S101Gfs*42 0.19 TCGA-RQ-AAAT-01 1 226925103 226925103 C T ITPKB Silent p.E19E 0.31 TCGA-RQ-AAAT-01 1 2422698 2422698 C T PLCH2 Missense_Mutation p.S501L 0.17 deleterious(0) possibly_damaging(0.852) TCGA-RQ-AAAT-01 1 248264154 248264154 A G OR2L13 3'UTR 0.57 TCGA-RQ-AAAT-01 1 38397324 38397324 G A INPP5B Intron 0.09 TCGA-RQ-AAAT-01 1 61548203 61548203 T A NFIA Intron 0.47 TCGA-RQ-AAAT-01 1 75672140 75672140 C T SLC44A5 3'UTR 0.47 TCGA-RQ-AAAT-01 1 92262875 92262875 G A TGFBR3 Missense_Mutation p.A72V 0.41 tolerated(0.14) benign(0.004) TCGA-RQ-AAAT-01 20 21492509 21492509 G A NKX2-2 3'UTR 0.11 TCGA-RQ-AAAT-01 20 24959519 24959519 C T APMAP Splice_Site p.X71_splice 0.46 TCGA-RQ-AAAT-01 20 56928537 56928537 G A RAB22A Missense_Mutation p.G107D 0.41 deleterious(0) probably_damaging(0.999) TCGA-RQ-AAAT-01 20 57269609 57269609 G A NPEPL1 Silent p.V156V 0.41 TCGA-RQ-AAAT-01 20 57269610 57269610 G A NPEPL1 Missense_Mutation p.G157R 0.42 tolerated(0.22) benign(0.091) TCGA-RQ-AAAT-01 21 10944730 10944730 A C TPTE Missense_Mutation p.I168M 0.13 deleterious(0.04) benign(0.309) TCGA-RQ-AAAT-01 21 34922547 34922547 T C SON Missense_Mutation p.L337P 0.31 benign(0.127) TCGA-RQ-AAAT-01 21 43255621 43255621 A G PRDM15 Missense_Mutation p.Y797H 0.46 tolerated(0.07) probably_damaging(0.929) TCGA-RQ-AAAT-01 21 45786654 45786654 G T TRPM2 Missense_Mutation p.Q147H 0.11 tolerated(0.1) possibly_damaging(0.519) TCGA-RQ-AAAT-01 22 22385645 22385645 G C IGLV4-69 Missense_Mutation p.S45T 0.44 deleterious(0.02) possibly_damaging(0.606) TCGA-RQ-AAAT-01 22 22385660 22385660 G A IGLV4-69 Missense_Mutation p.S50N 0.64 tolerated(0.63) benign(0.005) TCGA-RQ-AAAT-01 22 22385718 22385718 G C IGLV4-69 Missense_Mutation p.K69N 0.45 tolerated(0.25) benign(0.015) TCGA-RQ-AAAT-01 22 22516940 22516940 C G IGLV4-60 Missense_Mutation p.S76R 0.65 tolerated(0.13) benign(0.166) TCGA-RQ-AAAT-01 22 22517069 22517069 C A IGLV4-60 Missense_Mutation p.N119K 0.75 deleterious(0.01) benign(0.038) TCGA-RQ-AAAT-01 22 22550436 22550436 C T IGLV6-57 Missense_Mutation p.T38I 0.67 tolerated_low_confidence(0.11) benign(0.048) TCGA-RQ-AAAT-01 22 22550454 22550454 G A IGLV6-57 Missense_Mutation p.S44N 0.72 tolerated_low_confidence(0.09) benign(0.003) TCGA-RQ-AAAT-01 22 22550520 22550520 C T IGLV6-57 Missense_Mutation p.T66I 0.71 tolerated_low_confidence(0.44) benign(0.014) TCGA-RQ-AAAT-01 22 22550540 22550540 C G IGLV6-57 Missense_Mutation p.Q73E 0.74 tolerated_low_confidence(0.32) benign(0.002) TCGA-RQ-AAAT-01 22 22550641 22550641 T A IGLV6-57 Silent p.A106A 0.82 TCGA-RQ-AAAT-01 22 22673497 22673497 C T IGLV5-52 Missense_Mutation p.A97V 0.63 deleterious(0.03) benign(0.216) TCGA-RQ-AAAT-01 22 22673498 22673498 A T IGLV5-52 Silent p.A97A 0.63 TCGA-RQ-AAAT-01 22 22676841 22676841 C G IGLV1-51 5'UTR 0.71 TCGA-RQ-AAAT-01 22 22676906 22676906 A T IGLV1-51 Missense_Mutation p.T15S 0.62 tolerated(0.14) benign(0.209) TCGA-RQ-AAAT-01 22 23243263 23243263 G A IGLC2 Missense_Mutation p.A37T 0.74 benign(0.002) TCGA-RQ-AAAT-01 22 23243434 23243434 A G IGLC2 Missense_Mutation p.S94G 0.61 benign(0.004) TCGA-RQ-AAAT-01 22 23243436 23243436 C T IGLC2 Silent p.S94S 0.57 TCGA-RQ-AAAT-01 22 23248600 23248600 A G IGLC3 Missense_Mutation p.I30M 0.24 benign(0.081) TCGA-RQ-AAAT-01 22 24237465 24237465 T G AP000350.4 Missense_Mutation p.I114L 0.40 unknown(0) TCGA-RQ-AAAT-01 22 25115476 25115476 G A PIWIL3 Missense_Mutation p.P871L 0.45 deleterious(0) probably_damaging(0.97) TCGA-RQ-AAAT-01 22 32257381 32257381 C T DEPDC5 Missense_Mutation p.R1089C 0.34 deleterious(0) possibly_damaging(0.794) TCGA-RQ-AAAT-01 2 105473228 105473228 G A POU3F3 Silent p.A420A 0.37 TCGA-RQ-AAAT-01 2 170060578 170060578 A G LRP2 Missense_Mutation p.I2640T 0.56 possibly_damaging(0.792) TCGA-RQ-AAAT-01 2 191301341 191301341 C T MFSD6 Missense_Mutation p.R196C 0.63 deleterious(0.01) benign(0.026) TCGA-RQ-AAAT-01 2 191905872 191905872 G T STAT4 Silent p.G418G 0.20 TCGA-RQ-AAAT-01 2 212587162 212587162 T G ERBB4 Missense_Mutation p.N280T 0.17 tolerated(0.14) benign(0.012) TCGA-RQ-AAAT-01 2 218999498 218999498 A G CXCR2 Splice_Site 0.33 TCGA-RQ-AAAT-01 2 237076128 237076128 C T GBX2 Missense_Mutation p.A163T 0.44 tolerated(0.41) benign(0.017) TCGA-RQ-AAAT-01 2 29296353 29296353 C T C2orf71 Missense_Mutation p.E259K 0.14 tolerated(0.14) benign(0.071) TCGA-RQ-AAAT-01 2 46839367 46839367 C T PIGF Missense_Mutation p.G146E 0.40 deleterious(0.03) benign(0.445) TCGA-RQ-AAAT-01 2 60688036 60688036 C T BCL11A Missense_Mutation p.D671N 0.08 tolerated(0.09) possibly_damaging(0.539) TCGA-RQ-AAAT-01 2 67631813 67631813 G A ETAA1 Missense_Mutation p.E667K 0.42 deleterious(0.05) benign(0.031) TCGA-RQ-AAAT-01 2 79384234 79384234 T C REG3A 3'UTR 0.37 TCGA-RQ-AAAT-01 2 89160430 89160430 G A IGKJ4 Missense_Mutation p.T2I 0.45 probably_damaging(0.99) TCGA-RQ-AAAT-01 2 90249156 90249156 G C IGKV1D-43 Missense_Mutation p.G38R 0.43 deleterious(0.02) benign(0.433) TCGA-RQ-AAAT-01 2 90249217 90249217 A T IGKV1D-43 Missense_Mutation p.Y58F 0.41 tolerated(0.06) benign(0.433) TCGA-RQ-AAAT-01 2 90249245 90249245 G A IGKV1D-43 Silent p.K67K 0.38 TCGA-RQ-AAAT-01 2 90249365 90249365 T C IGKV1D-43 Silent p.T107T 0.23 TCGA-RQ-AAAT-01 3 118649074 118649074 A G IGSF11 Missense_Mutation p.V34A 0.21 deleterious(0.01) probably_damaging(0.946) TCGA-RQ-AAAT-01 3 130116569 130116569 G A COL6A5 Silent p.G1237G 0.45 TCGA-RQ-AAAT-01 3 135914100 135914100 T C MSL2 5'UTR 0.27 TCGA-RQ-AAAT-01 3 158289031 158289031 C A MLF1 5'Flank 0.24 TCGA-RQ-AAAT-01 3 186760483 186760483 A G ST6GAL1 5'UTR 0.53 TCGA-RQ-AAAT-01 3 186760492 186760492 A G ST6GAL1 Translation_Start_Site p.M1? 0.56 probably_damaging(0.986) TCGA-RQ-AAAT-01 3 25781094 25781094 G A NGLY1 Silent p.A285A 0.09 TCGA-RQ-AAAT-01 3 33431616 33431616 G A UBP1 3'UTR 0.14 TCGA-RQ-AAAT-01 3 38182641 38182641 T C MYD88 Missense_Mutation p.L273P 0.82 deleterious(0) probably_damaging(1) TCGA-RQ-AAAT-01 3 54798316 54798316 C T CACNA2D3 Missense_Mutation p.R440W 0.26 deleterious(0) probably_damaging(0.976) TCGA-RQ-AAAT-01 3 65415776 65415776 C T MAGI1 Missense_Mutation p.G529E 0.59 deleterious(0) probably_damaging(0.999) TCGA-RQ-AAAT-01 3 87295015 87295015 A G CHMP2B Missense_Mutation p.N93S 0.17 tolerated(0.41) benign(0.002) TCGA-RQ-AAAT-01 4 107845787 107845787 T C DKK2 Silent p.R148R 0.68 TCGA-RQ-AAAT-01 4 108816853 108816853 G A SGMS2 Silent p.G48G 0.66 TCGA-RQ-AAAT-01 4 110384430 110384430 T C SEC24B Silent p.S169S 0.21 TCGA-RQ-AAAT-01 4 155526109 155526109 G T FGG Silent p.I413I 0.21 TCGA-RQ-AAAT-01 4 158142838 158142838 C T GRIA2 Silent p.G36G 0.20 TCGA-RQ-AAAT-01 4 159601621 159601621 T G ETFDH Missense_Mutation p.Y13D 0.61 tolerated_low_confidence(0.19) benign(0.019) TCGA-RQ-AAAT-01 4 16165117 16165117 T C TAPT1 Silent p.Q506Q 0.21 TCGA-RQ-AAAT-01 4 16165144 16165144 T C TAPT1 Silent p.E497E 0.23 TCGA-RQ-AAAT-01 4 183650276 183650276 T G TENM3 Missense_Mutation p.F843V 0.13 deleterious(0.01) possibly_damaging(0.587) TCGA-RQ-AAAT-01 4 2097647 2097647 C T POLN Missense_Mutation p.V666M 0.16 tolerated(0.32) benign(0.012) TCGA-RQ-AAAT-01 4 21699026 21699026 A T KCNIP4 Intron 0.59 TCGA-RQ-AAAT-01 4 44680787 44680787 A G GUF1 Missense_Mutation p.S50G 0.15 tolerated(0.07) benign(0) TCGA-RQ-AAAT-01 4 6612851 6612851 G C MAN2B2 Missense_Mutation p.W803C 0.64 deleterious(0) probably_damaging(0.987) TCGA-RQ-AAAT-01 4 89772335 89772335 C A FAM13A Splice_Site p.X282_splice 0.25 TCGA-RQ-AAAT-01 4 95575792 95575792 G A PDLIM5 Splice_Site p.X517_splice 0.23 TCGA-RQ-AAAT-01 5 112419851 112419851 C T MCC Missense_Mutation p.E528K 0.31 tolerated_low_confidence(0.4) probably_damaging(0.97) TCGA-RQ-AAAT-01 5 126113530 126113530 C T LMNB1 Silent p.C110C 0.39 TCGA-RQ-AAAT-01 5 140186856 140186856 C T PCDHA4 Silent p.N28N 0.32 TCGA-RQ-AAAT-01 5 140517068 140517068 G A PCDHB5 Silent p.S684S 0.45 TCGA-RQ-AAAT-01 5 14681631 14681631 A T FAM105B Missense_Mutation p.Y128F 0.32 deleterious(0.03) possibly_damaging(0.664) TCGA-RQ-AAAT-01 5 71492363 71492363 C A MAP1B Missense_Mutation p.Q1061K 0.38 benign(0.004) TCGA-RQ-AAAT-01 6 106968969 106968969 T G AIM1 Missense_Mutation p.L888V 0.86 tolerated(0.7) benign(0.055) TCGA-RQ-AAAT-01 6 135239666 135239666 T A ALDH8A1 Missense_Mutation p.R451W 0.77 deleterious(0) probably_damaging(1) TCGA-RQ-AAAT-01 6 139262508 139262508 A G REPS1 Silent p.L367L 0.73 TCGA-RQ-AAAT-01 6 1610909 1610909 G T FOXC1 Missense_Mutation p.V77L 0.19 deleterious(0.02) probably_damaging(0.98) TCGA-RQ-AAAT-01 6 26056330 26056330 C G HIST1H1C Missense_Mutation p.K109N 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-RQ-AAAT-01 6 26124422 26124422 G A HIST1H2AC 5'Flank 0.11 TCGA-RQ-AAAT-01 6 26156900 26156900 G A HIST1H1E Silent p.V94V 0.39 TCGA-RQ-AAAT-01 6 26156969 26156969 G A HIST1H1E Silent p.K117K 0.26 TCGA-RQ-AAAT-01 6 26158526 26158526 C T HIST1H2BD Silent p.Y43Y 0.17 TCGA-RQ-AAAT-01 6 31549597 31549597 C T LTB Missense_Mutation p.G68R 0.41 tolerated(0.67) benign(0.004) TCGA-RQ-AAAT-01 6 33041313 33041313 G C HLA-DPA1 Missense_Mutation p.A12G 0.34 tolerated(0.21) benign(0) TCGA-RQ-AAAT-01 6 33041314 33041314 C T HLA-DPA1 Missense_Mutation p.A12T 0.33 tolerated(0.06) benign(0.002) TCGA-RQ-AAAT-01 6 37138242 37138242 G C PIM1 5'UTR 0.50 TCGA-RQ-AAAT-01 6 37138309 37138309 C T PIM1 5'UTR 0.18 TCGA-RQ-AAAT-01 6 37138402 37138402 C T PIM1 Silent p.C17C 0.26 TCGA-RQ-AAAT-01 6 37138423 37138423 G C PIM1 Missense_Mutation p.K24N 0.25 tolerated(0.48) benign(0.173) TCGA-RQ-AAAT-01 6 37138563 37138563 C A PIM1 Missense_Mutation p.P33T 0.20 tolerated(0.16) benign(0.006) TCGA-RQ-AAAT-01 6 37139203 37139203 G C PIM1 Missense_Mutation p.E181D 0.17 tolerated(0.29) benign(0.081) TCGA-RQ-AAAT-01 6 39607449 39607449 C T KIF6 Silent p.E112E 0.38 TCGA-RQ-AAAT-01 6 51523890 51523890 A G PKHD1 Silent p.I3678I 0.17 TCGA-RQ-AAAT-01 6 80223259 80223259 T G LCA5 Silent p.L130L 0.68 TCGA-RQ-AAAT-01 7 107603364 107603364 G A LAMB1 Missense_Mutation p.R615C 0.25 deleterious(0) benign(0.052) TCGA-RQ-AAAT-01 7 110762812 110762812 T A LRRN3 5'UTR 0.28 TCGA-RQ-AAAT-01 7 112102220 112102220 G T IFRD1 Missense_Mutation p.K261N 0.14 tolerated(0.19) benign(0.027) TCGA-RQ-AAAT-01 7 115890071 115890071 A G TES Intron 0.20 TCGA-RQ-AAAT-01 7 119915438 119915438 C T KCND2 Missense_Mutation p.A251V 0.15 deleterious(0) probably_damaging(0.987) TCGA-RQ-AAAT-01 7 120446623 120446623 G C TSPAN12 Missense_Mutation p.L198V 0.23 deleterious(0.01) probably_damaging(0.91) TCGA-RQ-AAAT-01 7 123388741 123388741 G A WASL Silent p.N16N 0.21 TCGA-RQ-AAAT-01 7 20199021 20199021 T C MACC1 Silent p.K321K 0.45 TCGA-RQ-AAAT-01 7 2409105 2409105 A C EIF3B Splice_Site p.X468_splice 0.34 TCGA-RQ-AAAT-01 7 33945290 33945290 C T BMPER Missense_Mutation p.T22M 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.551) TCGA-RQ-AAAT-01 7 90894950 90894950 A G FZD1 Missense_Mutation p.Q252R 0.23 tolerated(0.57) benign(0.003) TCGA-RQ-AAAT-01 8 101730000 101730000 C A PABPC1 Splice_Site p.X168_splice 0.35 TCGA-RQ-AAAT-01 8 101730422 101730422 G C PABPC1 Missense_Mutation p.R94G 0.36 deleterious(0) probably_damaging(0.995) TCGA-RQ-AAAT-01 8 10587841 10587841 G A SOX7 Missense_Mutation p.P35S 0.36 tolerated(0.59) benign(0.002) TCGA-RQ-AAAT-01 8 110346293 110346293 C G NUDCD1 5'UTR 0.43 TCGA-RQ-AAAT-01 8 120631489 120631489 A T ENPP2 Silent p.P158P 0.45 TCGA-RQ-AAAT-01 8 128748756 128748756 G A MYC 5'UTR 0.31 TCGA-RQ-AAAT-01 8 143927837 143927837 T C GML Missense_Mutation p.Y70H 0.41 deleterious(0.03) probably_damaging(0.991) TCGA-RQ-AAAT-01 8 146033808 146033808 C T ZNF517 3'UTR 0.12 TCGA-RQ-AAAT-01 8 1497114 1497114 C A DLGAP2 Missense_Mutation p.H85Q 0.30 deleterious(0) probably_damaging(0.977) TCGA-RQ-AAAT-01 8 1806254 1806254 G A ARHGEF10 Missense_Mutation p.G56R 0.49 tolerated_low_confidence(0.39) benign(0.098) TCGA-RQ-AAAT-01 8 3253858 3253858 C G CSMD1 Silent p.G817G 0.40 TCGA-RQ-AAAT-01 8 61714117 61714118 - A CHD7 Frame_Shift_Ins p.I805Nfs*20 0.19 TCGA-RQ-AAAT-01 8 681211 681211 G A ERICH1 5'UTR 0.33 TCGA-RQ-AAAT-01 9 125752371 125752371 C T RABGAP1 Missense_Mutation p.R268C 0.43 deleterious(0) probably_damaging(0.998) TCGA-RQ-AAAT-01 9 134073007 134073008 - C NUP214 Frame_Shift_Ins p.V1379Gfs*60 0.33 TCGA-RQ-AAAT-01 9 140135764 140135764 C A TUBB4B 5'UTR 0.33 TCGA-RQ-AAAT-01 9 16727796 16727796 T A BNC2 Missense_Mutation p.Q110L 0.45 deleterious(0) benign(0.056) TCGA-RQ-AAAT-01 9 18680514 18680514 G A ADAMTSL1 Silent p.P447P 0.36 TCGA-RQ-AAAT-01 9 34833306 34833306 G C FAM205B RNA 0.14 TCGA-RQ-AAAT-01 9 79118237 79118237 G A GCNT1 Missense_Mutation p.D314N 0.45 deleterious(0) probably_damaging(1) TCGA-RQ-AAAT-01 9 84609323 84609323 C T SPATA31D1 Missense_Mutation p.T1313I 0.55 deleterious(0) benign(0.372) TCGA-RQ-AAAT-01 9 94484815 94484815 C T ROR2 3'Flank 0.40 TCGA-RQ-AAAT-01 X 104464743 104464743 C T TEX13A Silent p.K113K 0.39 TCGA-RQ-AAAT-01 X 105066722 105066722 C T NRK 5'UTR 0.42 TCGA-RQ-AAAT-01 X 118717088 118717088 A C UBE2A Splice_Site p.X111_splice 0.80 TCGA-RQ-AAAT-01 X 153692396 153692396 A C PLXNA3 Silent p.S550S 0.28 TCGA-RQ-AAAT-01 X 155010969 155010969 G T SPRY3 3'UTR 0.36 TCGA-RQ-AAAT-01 X 49957130 49957130 C G AKAP4 Missense_Mutation p.G745A 0.73 tolerated(0.53) benign(0.005) TCGA-RQ-AAAT-01 X 50123002 50123002 G T DGKK RNA 0.37 TCGA-VB-A8QN-01 10 1230952 1230952 G A ADARB2 Missense_Mutation p.P631L 0.32 deleterious(0.03) benign(0.362) TCGA-VB-A8QN-01 10 17363320 17363320 C T ST8SIA6 Missense_Mutation p.A252T 0.24 tolerated(0.53) benign(0.008) TCGA-VB-A8QN-01 10 63661942 63661942 C T ARID5B Missense_Mutation p.H16Y 0.22 deleterious(0) possibly_damaging(0.838) TCGA-VB-A8QN-01 10 73050831 73050831 G T UNC5B Missense_Mutation p.G420V 0.28 deleterious(0) probably_damaging(0.931) TCGA-VB-A8QN-01 10 89720852 89720852 C T PTEN Nonsense_Mutation p.R335* 0.17 TCGA-VB-A8QN-01 10 94449794 94449794 G C HHEX Silent p.L17L 0.34 TCGA-VB-A8QN-01 11 100999588 100999588 C T PGR Missense_Mutation p.E72K 0.30 deleterious_low_confidence(0.04) benign(0.011) TCGA-VB-A8QN-01 11 111383730 111383730 C A C11orf88 5'Flank 0.19 TCGA-VB-A8QN-01 11 111851576 111851576 T C DIXDC1 Splice_Site p.X257_splice 0.20 TCGA-VB-A8QN-01 11 122726409 122726409 C T CRTAM Missense_Mutation p.T166M 0.17 deleterious(0) possibly_damaging(0.847) TCGA-VB-A8QN-01 11 125774440 125774440 G A DDX25 Missense_Mutation p.A10T 0.56 tolerated_low_confidence(0.26) benign(0.057) TCGA-VB-A8QN-01 11 128391824 128391824 C T ETS1 Intron 0.15 TCGA-VB-A8QN-01 11 2189155 2189155 C T TH Silent p.S226S 0.50 TCGA-VB-A8QN-01 11 22364888 22364888 C T SLC17A6 Silent p.I145I 0.30 TCGA-VB-A8QN-01 11 26664763 26664763 G A ANO3 Silent p.A770A 0.28 TCGA-VB-A8QN-01 11 32975559 32975559 A T QSER1 Missense_Mutation p.K1316M 0.25 deleterious(0.01) possibly_damaging(0.728) TCGA-VB-A8QN-01 11 33667498 33667498 G A KIAA1549L Silent p.P1595P 0.23 TCGA-VB-A8QN-01 11 56409003 56409003 T G OR5AP2 Missense_Mutation p.K305Q 0.16 tolerated(0.13) benign(0) TCGA-VB-A8QN-01 11 57509185 57509185 C T C11orf31 Missense_Mutation p.H40Y 0.19 deleterious(0) probably_damaging(0.939) TCGA-VB-A8QN-01 11 62368098 62368098 T C MTA2 Missense_Mutation p.N31S 0.16 deleterious(0.02) probably_damaging(0.989) TCGA-VB-A8QN-01 11 6653337 6653337 G C DCHS1 Missense_Mutation p.P1136A 0.24 tolerated(0.47) benign(0.005) TCGA-VB-A8QN-01 11 73008491 73008491 C T P2RY6 Missense_Mutation p.R310W 0.38 deleterious(0) benign(0.386) TCGA-VB-A8QN-01 12 111082831 111082831 G T TCTN1 Missense_Mutation p.G464V 0.23 deleterious(0) probably_damaging(1) TCGA-VB-A8QN-01 12 112182836 112182836 G A ACAD10 Missense_Mutation p.E733K 0.16 deleterious(0.02) benign(0.129) TCGA-VB-A8QN-01 12 115112370 115112370 G A TBX3 Missense_Mutation p.P457L 0.18 tolerated(0.46) possibly_damaging(0.864) TCGA-VB-A8QN-01 12 121670290 121670290 G A P2RX4 Missense_Mutation p.D336N 0.23 tolerated(0.07) possibly_damaging(0.698) TCGA-VB-A8QN-01 12 124103149 124103149 G A DDX55 Intron 0.23 TCGA-VB-A8QN-01 12 130855759 130855759 G T PIWIL1 Missense_Mutation p.G787V 0.21 deleterious(0) probably_damaging(1) TCGA-VB-A8QN-01 12 20522508 20522508 C T PDE3A Missense_Mutation p.A97V 0.25 tolerated_low_confidence(0.08) benign(0.084) TCGA-VB-A8QN-01 12 21201645 21201645 G A SLCO1B7 Splice_Site p.X332_splice 0.24 TCGA-VB-A8QN-01 12 25398262 25398262 C A KRAS Missense_Mutation p.L19F 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-VB-A8QN-01 12 32734984 32734984 A G FGD4 Silent p.T61T 0.24 TCGA-VB-A8QN-01 12 48579532 48579532 C G C12orf68 3'UTR 0.24 TCGA-VB-A8QN-01 12 51126265 51126265 G A DIP2B Silent p.P1309P 0.12 TCGA-VB-A8QN-01 12 58217705 58217705 T C CTDSP2 Missense_Mutation p.I224M 0.29 tolerated(0.06) possibly_damaging(0.711) TCGA-VB-A8QN-01 12 7061261 7061261 C T PTPN6 Nonsense_Mutation p.Q83* 0.33 TCGA-VB-A8QN-01 12 7067131 7067131 A G PTPN6 Missense_Mutation p.D419G 0.47 deleterious(0) benign(0.175) TCGA-VB-A8QN-01 13 41239864 41239864 G C FOXO1 Missense_Mutation p.N162K 0.45 deleterious(0) probably_damaging(0.995) TCGA-VB-A8QN-01 13 96601706 96601706 C T UGGT2 Nonsense_Mutation p.W446* 0.21 TCGA-VB-A8QN-01 14 106110965 106110965 C T IGHG2 Missense_Mutation p.A55T 0.28 deleterious(0) probably_damaging(0.999) TCGA-VB-A8QN-01 14 20295818 20295818 G A OR4N2 Missense_Mutation p.A71T 0.24 deleterious(0.01) benign(0.271) TCGA-VB-A8QN-01 14 24702483 24702483 G T GMPR2 Silent p.V26V 0.32 TCGA-VB-A8QN-01 14 31819064 31819064 C T HEATR5A Nonsense_Mutation p.W587* 0.28 TCGA-VB-A8QN-01 14 44973798 44973798 G A FSCB Missense_Mutation p.S798F 0.21 tolerated(0.07) unknown(0) TCGA-VB-A8QN-01 14 70926009 70926009 G A ADAM21 Missense_Mutation p.R598K 0.28 deleterious(0) benign(0.012) TCGA-VB-A8QN-01 14 74762572 74762572 A T ABCD4 Missense_Mutation p.L218Q 0.28 tolerated(0.1) possibly_damaging(0.542) TCGA-VB-A8QN-01 15 23890158 23890158 G T MAGEL2 Missense_Mutation p.P308Q 0.17 deleterious(0) benign(0.312) TCGA-VB-A8QN-01 15 26806091 26806091 G A GABRB3 Silent p.S356S 0.21 TCGA-VB-A8QN-01 15 28202854 28202854 C T OCA2 Missense_Mutation p.R555H 0.36 deleterious(0.03) possibly_damaging(0.563) TCGA-VB-A8QN-01 15 29346718 29346718 C T APBA2 Missense_Mutation p.R211C 0.27 deleterious_low_confidence(0.01) benign(0.003) TCGA-VB-A8QN-01 15 35148800 35148800 A G AQR 3'UTR 0.26 TCGA-VB-A8QN-01 15 43476576 43476576 T C TMEM62 Missense_Mutation p.V575A 0.28 tolerated(0.05) benign(0.041) TCGA-VB-A8QN-01 15 43577071 43577071 G A TGM7 Silent p.I315I 0.40 TCGA-VB-A8QN-01 15 43814279 43814279 T A MAP1A Missense_Mutation p.L203H 0.23 probably_damaging(1) TCGA-VB-A8QN-01 15 43897569 43897569 C A STRC Nonsense_Mutation p.E1275* 0.27 TCGA-VB-A8QN-01 15 60297267 60297267 G A FOXB1 Silent p.P35P 0.22 TCGA-VB-A8QN-01 15 75660458 75660458 C T MAN2C1 Silent p.Q61Q 0.25 TCGA-VB-A8QN-01 16 11349190 11349190 G A SOCS1 Missense_Mutation p.A49V 0.41 tolerated(0.24) benign(0.004) TCGA-VB-A8QN-01 16 23690446 23690446 G T PLK1 Missense_Mutation p.A65S 0.05 deleterious(0) probably_damaging(0.999) TCGA-VB-A8QN-01 16 2374447 2374447 G A ABCA3 Silent p.F135F 0.33 TCGA-VB-A8QN-01 16 30778068 30778068 G A RNF40 Missense_Mutation p.E434K 0.32 deleterious(0) probably_damaging(0.909) TCGA-VB-A8QN-01 16 815722 815722 C T MSLN Missense_Mutation p.S276F 0.21 tolerated(0.22) possibly_damaging(0.707) TCGA-VB-A8QN-01 16 83998841 83998841 G T OSGIN1 Missense_Mutation p.Q221H 0.10 tolerated(0.07) benign(0.037) TCGA-VB-A8QN-01 17 10400708 10400708 T G MYH1 Missense_Mutation p.K1476T 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-VB-A8QN-01 17 10428151 10428151 C T MYH2 Missense_Mutation p.E1632K 0.28 deleterious(0) probably_damaging(0.986) TCGA-VB-A8QN-01 17 20107645 20107645 G T SPECC1 Splice_Site p.X95_splice 0.21 TCGA-VB-A8QN-01 17 34324727 34324727 T A CCL15 3'UTR 0.29 TCGA-VB-A8QN-01 17 40475068 40475068 G C STAT3 Missense_Mutation p.S614R 0.27 tolerated(0.35) probably_damaging(0.975) TCGA-VB-A8QN-01 17 4452624 4452624 C T MYBBP1A Intron 0.38 TCGA-VB-A8QN-01 17 48674136 48674136 C T CACNA1G Missense_Mutation p.P1037L 0.25 deleterious(0.04) benign(0.126) TCGA-VB-A8QN-01 17 56599357 56599357 G A SEPT4 Silent p.C271C 0.27 TCGA-VB-A8QN-01 17 60759200 60759200 G A MRC2 Nonsense_Mutation p.W902* 0.37 TCGA-VB-A8QN-01 17 7339603 7339603 G C TMEM102 Missense_Mutation p.G102A 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-VB-A8QN-01 17 76450728 76450728 G A DNAH17 Silent p.D3396D 0.30 TCGA-VB-A8QN-01 17 8108608 8108608 A T AURKB Missense_Mutation p.C263S 0.30 tolerated(0.06) possibly_damaging(0.729) TCGA-VB-A8QN-01 17 8138154 8138154 G A CTC1 Silent p.T510T 0.24 TCGA-VB-A8QN-01 18 28742583 28742583 C T DSC1 5'UTR 0.29 TCGA-VB-A8QN-01 18 28926102 28926102 A G DSG1 Missense_Mutation p.M681V 0.18 tolerated(0.17) benign(0.022) TCGA-VB-A8QN-01 18 28966774 28966774 A G DSG4 Missense_Mutation p.I70V 0.22 deleterious(0) probably_damaging(0.997) TCGA-VB-A8QN-01 18 581428 581428 C T CETN1 3'UTR 0.24 TCGA-VB-A8QN-01 18 67068326 67068326 C T DOK6 5'UTR 0.27 TCGA-VB-A8QN-01 18 70205920 70205920 C T CBLN2 Missense_Mutation p.V149M 0.33 tolerated(0.16) probably_damaging(0.994) TCGA-VB-A8QN-01 19 13054718 13054718 C T CALR Silent p.D415D 0.24 TCGA-VB-A8QN-01 19 1650209 1650209 G A TCF3 Silent p.D13D 0.28 TCGA-VB-A8QN-01 19 17984984 17984984 G T SLC5A5 Missense_Mutation p.C132F 0.25 tolerated(0.05) possibly_damaging(0.493) TCGA-VB-A8QN-01 19 22157288 22157288 C T ZNF208 Missense_Mutation p.C183Y 0.29 tolerated(1) benign(0.065) TCGA-VB-A8QN-01 19 38056151 38056151 G T ZNF571 Nonsense_Mutation p.C393* 0.22 TCGA-VB-A8QN-01 19 38876581 38876583 GCA - GGN In_Frame_Del p.L440del 0.10 TCGA-VB-A8QN-01 19 52569180 52569180 G A ZNF841 Missense_Mutation p.P652L 0.24 deleterious(0.03) probably_damaging(0.975) TCGA-VB-A8QN-01 19 52569959 52569959 C G ZNF841 Missense_Mutation p.Q392H 0.26 tolerated(0.06) benign(0.165) TCGA-VB-A8QN-01 19 58574874 58574874 C T ZNF135 Missense_Mutation p.A86V 0.18 tolerated(0.85) benign(0.003) TCGA-VB-A8QN-01 19 9045793 9045793 T C MUC16 Missense_Mutation p.I11946M 0.22 benign(0.039) TCGA-VB-A8QN-01 19 9062349 9062349 T A MUC16 Missense_Mutation p.Q8366L 0.21 unknown(0) TCGA-VB-A8QN-01 1 12398337 12398337 C T VPS13D Silent p.N2867N 0.28 TCGA-VB-A8QN-01 1 148342484 148342484 T C NBPF20 Silent p.K184K 0.15 TCGA-VB-A8QN-01 1 149858047 149858047 C T HIST2H2BE Silent p.Q48Q 0.22 TCGA-VB-A8QN-01 1 150551347 150551347 C T MCL1 Silent p.V220V 0.22 TCGA-VB-A8QN-01 1 152128876 152128876 T G RPTN Missense_Mutation p.K233N 0.18 tolerated(0.34) benign(0.013) TCGA-VB-A8QN-01 1 152800123 152800123 G A LCE1A Missense_Mutation p.G59S 0.20 tolerated_low_confidence(0.61) unknown(0) TCGA-VB-A8QN-01 1 155288031 155288031 C T FDPS Silent p.L211L 0.27 TCGA-VB-A8QN-01 1 162549371 162549371 G A UAP1 Silent p.K213K 0.26 TCGA-VB-A8QN-01 1 16256987 16256987 C T SPEN Nonsense_Mutation p.R1418* 0.20 TCGA-VB-A8QN-01 1 16332643 16332643 C G C1orf64 Silent p.A104A 0.17 TCGA-VB-A8QN-01 1 167096795 167096795 G A DUSP27 Silent p.A809A 0.18 TCGA-VB-A8QN-01 1 169101451 169101451 C A ATP1B1 3'UTR 0.17 TCGA-VB-A8QN-01 1 169391492 169391492 C T CCDC181 Missense_Mutation p.M59I 0.20 tolerated(0.2) benign(0) TCGA-VB-A8QN-01 1 171174750 171174750 G A FMO2 Missense_Mutation p.R387H 0.19 deleterious(0.01) probably_damaging(0.944) TCGA-VB-A8QN-01 1 173502822 173502822 C T SLC9C2 Missense_Mutation p.D697N 0.22 tolerated(0.4) benign(0.009) TCGA-VB-A8QN-01 1 174418186 174418209 AACTGTGTAATATACAGCCTCTCC - GPR52 In_Frame_Del p.C314_N321del 0.18 TCGA-VB-A8QN-01 1 17747239 17747239 G A RCC2 Missense_Mutation p.S277F 0.27 deleterious(0) probably_damaging(0.989) TCGA-VB-A8QN-01 1 182638779 182638779 C T RGS8 Intron 0.21 TCGA-VB-A8QN-01 1 18962816 18962816 C T PAX7 Silent p.D179D 0.23 TCGA-VB-A8QN-01 1 196658647 196658647 C T CFH Silent p.S354S 0.22 TCGA-VB-A8QN-01 1 196716285 196716285 G A CFH Missense_Mutation p.A1180T 0.17 tolerated(0.66) benign(0.001) TCGA-VB-A8QN-01 1 201182456 201182456 C T IGFN1 Missense_Mutation p.P2812L 0.18 benign(0.035) TCGA-VB-A8QN-01 1 202915676 202915676 G A ADIPOR1 Silent p.N107N 0.16 TCGA-VB-A8QN-01 1 203276387 203276387 C T BTG2 Silent p.L100L 0.15 TCGA-VB-A8QN-01 1 206905831 206905831 G T MAPKAPK2 Intron 0.18 TCGA-VB-A8QN-01 1 225459710 225459710 C T DNAH14 Missense_Mutation p.R2586C 0.22 benign(0) TCGA-VB-A8QN-01 1 22835092 22835092 G T ZBTB40 Nonsense_Mutation p.E523* 0.24 TCGA-VB-A8QN-01 1 228557697 228557697 C T OBSCN Silent p.N7631N 0.22 TCGA-VB-A8QN-01 1 231931010 231931010 C A DISC1 Missense_Mutation p.L553I 0.22 deleterious(0.05) possibly_damaging(0.592) TCGA-VB-A8QN-01 1 238045850 238045850 C T ZP4 Splice_Site p.X499_splice 0.26 TCGA-VB-A8QN-01 1 240635709 240635709 G T FMN2 Nonsense_Mutation p.G1700* 0.19 TCGA-VB-A8QN-01 1 244769022 244769022 G A C1orf101 Missense_Mutation p.D777N 0.24 tolerated(0.08) benign(0.049) TCGA-VB-A8QN-01 1 27608772 27608772 G A WDTC1 Missense_Mutation p.G59R 0.36 deleterious(0) probably_damaging(1) TCGA-VB-A8QN-01 1 28282207 28282207 G A SMPDL3B Missense_Mutation p.G235S 0.23 deleterious(0.05) probably_damaging(0.998) TCGA-VB-A8QN-01 1 39908411 39908411 A G MACF1 Missense_Mutation p.H4318R 0.26 probably_damaging(0.999) TCGA-VB-A8QN-01 1 62718879 62718879 C T KANK4 Missense_Mutation p.V848I 0.35 tolerated(0.08) benign(0.022) TCGA-VB-A8QN-01 1 6614187 6614187 G A NOL9 Silent p.L126L 0.58 TCGA-VB-A8QN-01 1 6614246 6614246 C T NOL9 Missense_Mutation p.S106N 0.29 tolerated(0.44) benign(0.002) TCGA-VB-A8QN-01 1 6614311 6614311 G A NOL9 Silent p.S84S 0.27 TCGA-VB-A8QN-01 1 6614339 6614339 G C NOL9 Missense_Mutation p.A75G 0.28 tolerated(0.45) benign(0.039) TCGA-VB-A8QN-01 1 70034106 70034106 G A LRRC7 5'UTR 0.24 TCGA-VB-A8QN-01 1 71437239 71437239 T A PTGER3 Intron 0.33 TCGA-VB-A8QN-01 1 75672287 75672287 C A SLC44A5 3'UTR 0.21 TCGA-VB-A8QN-01 1 77334232 77334232 G A ST6GALNAC5 Silent p.L22L 0.24 TCGA-VB-A8QN-01 1 82409302 82409302 C A LPHN2 Missense_Mutation p.N349K 0.28 tolerated(0.09) benign(0.002) TCGA-VB-A8QN-01 1 8384436 8384436 C A SLC45A1 Missense_Mutation p.P16H 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.779) TCGA-VB-A8QN-01 1 98186243 98186243 G T DPYD Intron 0.25 TCGA-VB-A8QN-01 20 10633195 10633195 C T JAG1 Silent p.P269P 0.23 TCGA-VB-A8QN-01 20 31825915 31825915 C T BPIFA1 Missense_Mutation p.P72L 0.30 deleterious(0) probably_damaging(1) TCGA-VB-A8QN-01 20 54824397 54824397 G T MC3R Silent p.V166V 0.18 TCGA-VB-A8QN-01 20 62521256 62521256 G A TPD52L2 Silent p.A216A 0.33 TCGA-VB-A8QN-01 21 22881287 22881287 G A NCAM2 Silent p.L731L 0.29 TCGA-VB-A8QN-01 21 45680710 45680710 T C DNMT3L Missense_Mutation p.Y40C 0.24 tolerated(0.06) probably_damaging(0.988) TCGA-VB-A8QN-01 22 23230078 23230078 G C IGLL5 5'UTR 0.14 TCGA-VB-A8QN-01 22 23230278 23230278 G A IGLL5 Silent p.E15E 0.27 TCGA-VB-A8QN-01 22 24447360 24447360 C T CABIN1 Nonsense_Mutation p.R244* 0.28 TCGA-VB-A8QN-01 22 29195994 29195994 G A XBP1 Intron 0.23 TCGA-VB-A8QN-01 2 132277972 132277972 C T AC093838.4 RNA 0.29 TCGA-VB-A8QN-01 2 133636475 133636475 C T NCKAP5 Silent p.A198A 0.27 TCGA-VB-A8QN-01 2 155566166 155566166 G A KCNJ3 Missense_Mutation p.D252N 0.23 tolerated(0.82) probably_damaging(0.981) TCGA-VB-A8QN-01 2 166245306 166245306 G A SCN2A Missense_Mutation p.G1664S 0.23 deleterious(0) possibly_damaging(0.703) TCGA-VB-A8QN-01 2 178415820 178415820 C T TTC30B Missense_Mutation p.G558R 0.26 deleterious(0.03) probably_damaging(0.984) TCGA-VB-A8QN-01 2 184022203 184022203 C T NUP35 Silent p.L191L 0.23 TCGA-VB-A8QN-01 2 20647760 20647760 G A RHOB Silent p.A178A 0.27 TCGA-VB-A8QN-01 2 210680092 210680092 C T UNC80 Silent p.L438L 0.19 TCGA-VB-A8QN-01 2 231921685 231921685 T G PSMD1 5'UTR 0.32 TCGA-VB-A8QN-01 2 238249705 238249705 G A COL6A3 Silent p.I2618I 0.38 TCGA-VB-A8QN-01 2 27260571 27260571 G A TMEM214 Splice_Site p.X384_splice 0.26 TCGA-VB-A8QN-01 2 3261073 3261073 G C TSSC1 Missense_Mutation p.A138G 0.20 tolerated(0.09) probably_damaging(0.935) TCGA-VB-A8QN-01 2 5833856 5833856 T A SOX11 Missense_Mutation p.S335T 0.35 deleterious(0.04) possibly_damaging(0.899) TCGA-VB-A8QN-01 2 63665033 63665033 C T WDPCP Intron 0.24 TCGA-VB-A8QN-01 2 73518977 73518977 G A EGR4 Nonsense_Mutation p.R460* 0.16 TCGA-VB-A8QN-01 2 84921393 84921393 A G DNAH6 Missense_Mutation p.Q2438R 0.34 deleterious(0.04) possibly_damaging(0.873) TCGA-VB-A8QN-01 2 89160102 89160102 T C IGKJ5 Silent p.Q6Q 0.31 TCGA-VB-A8QN-01 2 89247021 89247021 C G IGKV1-5 Missense_Mutation p.S50T 0.25 tolerated(0.11) benign(0.011) TCGA-VB-A8QN-01 3 112051926 112051926 G A CD200 5'Flank 0.21 TCGA-VB-A8QN-01 3 112051927 112051927 G C CD200 5'Flank 0.21 TCGA-VB-A8QN-01 3 113955390 113955390 G A ZNF80 Missense_Mutation p.R178W 0.21 deleterious(0.05) probably_damaging(0.986) TCGA-VB-A8QN-01 3 124165041 124165041 G A KALRN Missense_Mutation p.R1114H 0.14 deleterious(0.01) probably_damaging(0.966) TCGA-VB-A8QN-01 3 141688919 141688921 AGG - TFDP2 In_Frame_Del p.L243del 0.22 TCGA-VB-A8QN-01 3 142681479 142681479 C A PAQR9 Missense_Mutation p.D234Y 0.31 deleterious(0.03) possibly_damaging(0.737) TCGA-VB-A8QN-01 3 154139035 154139035 T C GPR149 Silent p.K472K 0.26 TCGA-VB-A8QN-01 3 192516412 192516412 G A MB21D2 Silent p.T413T 0.35 TCGA-VB-A8QN-01 3 41954353 41954353 T C ULK4 Missense_Mutation p.K281R 0.28 tolerated(0.18) benign(0.015) TCGA-VB-A8QN-01 3 48265112 48265112 A G CAMP Silent p.E40E 0.23 TCGA-VB-A8QN-01 3 89480468 89480468 C T EPHA3 Missense_Mutation p.R769C 0.25 deleterious(0) probably_damaging(0.998) TCGA-VB-A8QN-01 3 97466293 97466293 C T EPHA6 Missense_Mutation p.P1052L 0.16 deleterious(0.03) benign(0.21) TCGA-VB-A8QN-01 3 97727838 97727838 G A GABRR3 Intron 0.13 TCGA-VB-A8QN-01 4 146059393 146059393 T C OTUD4 Missense_Mutation p.N780S 0.32 tolerated(0.28) benign(0.036) TCGA-VB-A8QN-01 4 155665953 155665953 A C LRAT Missense_Mutation p.N159H 0.25 tolerated(0.18) possibly_damaging(0.737) TCGA-VB-A8QN-01 4 3418713 3418713 C T RGS12 Missense_Mutation p.A834V 0.28 deleterious(0) benign(0.296) TCGA-VB-A8QN-01 4 52890057 52890057 C G SGCB 3'UTR 0.19 TCGA-VB-A8QN-01 4 54362377 54362377 C A LNX1 Missense_Mutation p.S388I 0.27 deleterious(0.03) possibly_damaging(0.756) TCGA-VB-A8QN-01 4 55958789 55958789 G A KDR Nonsense_Mutation p.R1022* 0.21 TCGA-VB-A8QN-01 4 69962771 69962771 A G UGT2B7 Missense_Mutation p.Y178C 0.23 tolerated(0.08) probably_damaging(0.94) TCGA-VB-A8QN-01 4 90168900 90168900 T A GPRIN3 3'UTR 0.27 TCGA-VB-A8QN-01 5 102612281 102612281 C T C5orf30 3'UTR 0.28 TCGA-VB-A8QN-01 5 110428002 110428002 G T WDR36 Missense_Mutation p.G6C 0.14 deleterious_low_confidence(0.03) benign(0.005) TCGA-VB-A8QN-01 5 140175767 140175767 G A PCDHA2 Silent p.S406S 0.25 TCGA-VB-A8QN-01 5 140229661 140229661 G C PCDHA9 Missense_Mutation p.E527D 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.649) TCGA-VB-A8QN-01 5 140251070 140251070 C T PCDHA11 Silent p.H794H 0.25 TCGA-VB-A8QN-01 5 140764414 140764414 G A PCDHGA7 Missense_Mutation p.G650S 0.28 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-VB-A8QN-01 5 155771496 155771496 C A SGCD Intron 0.19 TCGA-VB-A8QN-01 5 161317976 161317976 T A GABRA1 Missense_Mutation p.L259Q 0.17 deleterious(0) probably_damaging(0.971) TCGA-VB-A8QN-01 5 178549748 178549748 G T ADAMTS2 Silent p.T995T 0.21 TCGA-VB-A8QN-01 5 42689036 42689036 C T GHR Nonsense_Mutation p.R61* 0.23 TCGA-VB-A8QN-01 6 170591746 170591746 C T DLL1 3'UTR 0.18 TCGA-VB-A8QN-01 6 170704591 170704591 G A FAM120B Silent p.Q872Q 0.31 TCGA-VB-A8QN-01 6 26045812 26045812 C T HIST1H3C Silent p.S58S 0.29 TCGA-VB-A8QN-01 6 26055986 26055986 C T HIST1H1C 3'UTR 0.22 TCGA-VB-A8QN-01 6 26056471 26056471 C G HIST1H1C Silent p.L62L 0.30 TCGA-VB-A8QN-01 6 26156985 26156985 G C HIST1H1E Missense_Mutation p.A123P 0.25 tolerated(0.99) unknown(0) TCGA-VB-A8QN-01 6 26157108 26157108 G A HIST1H1E Missense_Mutation p.A164T 0.30 tolerated(0.91) unknown(0) TCGA-VB-A8QN-01 6 26234976 26234976 C T HIST1H1D Silent p.A62A 0.30 TCGA-VB-A8QN-01 6 27101120 27101120 C T HIST1H2AG Silent p.N90N 0.23 TCGA-VB-A8QN-01 6 27114200 27114200 C T HIST1H2BK Silent p.K126K 0.34 TCGA-VB-A8QN-01 6 27834916 27834916 G A HIST1H1B Missense_Mutation p.A131V 0.29 tolerated(0.38) unknown(0) TCGA-VB-A8QN-01 6 31324576 31324576 G A HLA-B Nonsense_Mutation p.Q78* 0.25 TCGA-VB-A8QN-01 6 37138372 37138372 C T PIM1 Silent p.N7N 0.23 TCGA-VB-A8QN-01 6 47976501 47976501 C T PTCHD4 Missense_Mutation p.R259H 0.29 deleterious(0) probably_damaging(0.996) TCGA-VB-A8QN-01 6 52288818 52288818 G C EFHC1 Silent p.G46G 0.22 TCGA-VB-A8QN-01 6 56483209 56483209 C T DST Intron 0.22 TCGA-VB-A8QN-01 6 56966784 56966784 C G ZNF451 Intron 0.28 TCGA-VB-A8QN-01 6 62887168 62887168 C A KHDRBS2 Missense_Mutation p.K47N 0.36 tolerated(0.38) probably_damaging(0.941) TCGA-VB-A8QN-01 6 90466006 90466006 C T MDN1 Missense_Mutation p.G936R 0.26 possibly_damaging(0.636) TCGA-VB-A8QN-01 7 100867230 100867230 G A ZNHIT1 Nonsense_Mutation p.W152* 0.23 TCGA-VB-A8QN-01 7 110764565 110764565 T C LRRN3 Silent p.N579N 0.34 TCGA-VB-A8QN-01 7 113517882 113517882 C T PPP1R3A Missense_Mutation p.V1089I 0.24 tolerated(1) benign(0) TCGA-VB-A8QN-01 7 122634896 122634896 C G TAS2R16 Missense_Mutation p.V265L 0.42 deleterious(0.04) benign(0.009) TCGA-VB-A8QN-01 7 12381703 12381703 C A VWDE Nonsense_Mutation p.G1418* 0.14 TCGA-VB-A8QN-01 7 129856372 129856372 T C SSMEM1 3'UTR 0.30 TCGA-VB-A8QN-01 7 152132948 152132948 C T KMT2C 5'UTR 0.05 TCGA-VB-A8QN-01 7 64388883 64388883 A C ZNF273 Missense_Mutation p.K393Q 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-VB-A8QN-01 7 82595194 82595194 G C PCLO Missense_Mutation p.Q1304E 0.22 unknown(0) TCGA-VB-A8QN-01 7 83036446 83036446 G A SEMA3E Silent p.H260H 0.25 TCGA-VB-A8QN-01 8 135612768 135612768 T C ZFAT Missense_Mutation p.I796V 0.20 tolerated(0.21) benign(0.003) TCGA-VB-A8QN-01 8 144997818 144997818 C T PLEC Silent p.A2230A 0.21 TCGA-VB-A8QN-01 8 40011556 40011556 G T C8orf4 3'UTR 0.15 TCGA-VB-A8QN-01 8 41834600 41834600 A G KAT6A Missense_Mutation p.V430A 0.28 benign(0.013) TCGA-VB-A8QN-01 8 61653855 61653855 A G CHD7 5'UTR 0.15 TCGA-VB-A8QN-01 8 72267114 72267114 C T EYA1 Silent p.P9P 0.25 TCGA-VB-A8QN-01 9 12694262 12694262 T A TYRP1 Missense_Mutation p.V89D 0.26 tolerated(0.23) benign(0.017) TCGA-VB-A8QN-01 9 129600131 129600132 - A ZBTB43 3'UTR 0.09 TCGA-VB-A8QN-01 9 129600143 129600143 T C ZBTB43 3'UTR 0.21 TCGA-VB-A8QN-01 9 140509497 140509497 C T ARRDC1 Intron 0.24 TCGA-VB-A8QN-01 9 34125210 34125210 G A DCAF12 Silent p.Y48Y 0.29 TCGA-VB-A8QN-01 9 84534436 84534436 G A SPATA31D5P RNA 0.38 TCGA-VB-A8QN-01 X 10093117 10093117 C T WWC3 Missense_Mutation p.P627L 0.54 tolerated(1) benign(0.001) TCGA-VB-A8QN-01 X 112048272 112048272 G T AMOT Missense_Mutation p.T560N 0.57 unknown(0) TCGA-VB-A8QN-01 X 118708862 118708862 A C UBE2A Splice_Site p.X15_splice 0.45 TCGA-VB-A8QN-01 X 13727482 13727482 G A RAB9A 3'UTR 0.56 TCGA-VB-A8QN-01 X 34961271 34961271 C T FAM47B Missense_Mutation p.S108L 0.41 tolerated(0.14) benign(0.024)